393 100 71 14 chr15 17000001 17000071 -84380450 + MSTA LTR MaLR 124 197 -231 2204 110 10 3 chr15 17000073 17000452 -84380069 + AluY SINE Alu 1 381 0 764 191 167 9 chr15 17000452 17000662 -84379859 + MSTA LTR MaLR 186 428 0 685 228 0 59 chr15 17000664 17000883 -84379638 + L1 LINE L1 3344 3549 -2597 1178 254 59 104 chr15 17000985 17001266 -84379255 - L1MEd LINE L1 -3105 3024 2732 250 171 0 0 chr15 17001266 17001307 -84379214 + U2 snRNA snRNA 1 41 -147 1178 254 59 104 chr15 17001307 17001810 -84378711 - L1MEd LINE L1 -3397 2732 2237 1276 219 7 7 chr15 17001840 17002110 -84378411 + L1M3e LINE L1 7 276 -6754 505 261 116 39 chr15 17002095 17002158 -84378363 - L1MEd LINE L1 -4011 2118 2061 * 964 113 6 6 chr15 17002158 17002317 -84378204 + (TTCC)n Simple_repeat Simple_repeat 3 161 0 505 261 116 39 chr15 17002317 17002537 -84377984 - L1MEd LINE L1 -4068 2061 1813 2032 241 9 9 chr15 17002538 17003116 -84377405 - L1MEd LINE L1 -4475 1654 1077 1296 217 38 62 chr15 17005195 17005568 -84374953 + MSTD LTR MaLR 33 396 0 1502 273 28 2 chr15 17005571 17006003 -84374518 + MSTD-int LTR MaLR 2 444 -1291 * 1823 252 143 66 chr15 17005999 17006831 -84373690 + MSTD-int LTR MaLR 730 1625 -26 1506 208 46 14 chr15 17006854 17007200 -84373321 + MSTD LTR MaLR 1 357 -39 1053 122 0 0 chr15 17007204 17007352 -84373169 + AluY SINE Alu 146 293 -18 308 102 0 20 chr15 17007352 17007401 -84373120 + MSTD LTR MaLR 348 395 -1 478 106 0 47 chr15 17007403 17007488 -84373033 - L1M2 LINE L1 -822 5469 5389 1629 183 29 39 chr15 17007496 17007907 -84372614 + L1MA7 LINE L1 5867 6273 -18 1365 319 51 41 chr15 17007985 17008774 -84371747 - MER89-int LTR ERV1 -2507 4294 3498 260 176 0 66 chr15 17011914 17012096 -84368425 + (CAGGT)n Simple_repeat Simple_repeat 1 170 0 346 325 41 33 chr15 17012893 17013164 -84367357 - L1ME3A LINE L1 -214 5956 5684 303 205 0 98 chr15 17013307 17013419 -84367102 - L1MEd LINE L1 -5051 1068 968 1758 238 82 14 chr15 17017906 17018490 -84362031 - MER67B LTR ERV1 -6 655 32 887 234 71 69 chr15 17019386 17019750 -84360771 + MLT1A1 LTR MaLR 1 365 0 369 347 112 16 chr15 17020050 17020301 -84360220 - L1ME4a LINE L1 -183 5938 5664 359 251 82 45 chr15 17020286 17020460 -84360061 - L1ME4a LINE L1 -755 5391 5213 * 267 298 38 15 chr15 17020995 17021126 -84359395 - L1ME4a LINE L1 -2595 3551 3418 368 317 13 88 chr15 17021700 17021927 -84358594 - MIR SINE MIR 0 262 53 327 164 0 0 chr15 17024439 17024500 -84356021 + GA-rich Low_complexity Low_complexity 1 61 0 912 238 107 47 chr15 17024652 17025081 -84355440 - MLT1D LTR MaLR -12 493 39 180 0 0 0 chr15 17028151 17028171 -84352350 + (CA)n Simple_repeat Simple_repeat 2 21 0 601 203 11 0 chr15 17028925 17029102 -84351419 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 3823 138 14 22 chr15 17029105 17029690 -84350831 - MER50 LTR ERV1 -17 717 135 2153 129 0 0 chr15 17029690 17030001 -84350520 - AluSc SINE Alu 0 311 1 3823 138 14 22 chr15 17030001 17030054 -84350467 - MER50 LTR ERV1 -599 135 83 699 201 0 0 chr15 17030082 17030332 -84350189 + (TCCA)n Simple_repeat Simple_repeat 1 250 0 182 125 0 25 chr15 17030900 17030940 -84349581 + (TC)n Simple_repeat Simple_repeat 2 40 0 2109 147 3 0 chr15 17031254 17031553 -84348968 - AluSx SINE Alu -12 300 1 507 226 8 0 chr15 17032192 17032316 -84348205 - L1MA8 LINE L1 0 6291 6167 1528 208 60 21 chr15 17033108 17033493 -84347028 + MLT1D LTR MaLR 1 400 -105 507 271 0 0 chr15 17034219 17034348 -84346173 - FRAM SINE Alu -46 130 2 597 125 21 0 chr15 17034365 17034461 -84346060 + AluJ/FLAM SINE Alu 2 99 -213 506 276 70 30 chr15 17034476 17034675 -84345846 - MLT2F LTR ERVL -72 591 385 463 197 42 42 chr15 17034692 17034834 -84345687 - LTR49-int LTR ERV1 -2154 4177 4036 3615 232 46 25 chr15 17034844 17035693 -84344828 + L1PA13 LINE L1 1 867 -5920 4880 204 18 38 chr15 17035699 17037498 -84343023 + L1PA13 LINE L1 1204 2981 -3816 40330 60 3 1 chr15 17037504 17043651 -84336870 - L1PA4 LINE L1 0 6155 1 1366 179 17 109 chr15 17043686 17043741 -84336780 + THE1C LTR MaLR 1 59 -316 2769 17 0 0 chr15 17043741 17044038 -84336483 + AluYa5 SINE Alu 1 297 -14 1366 179 17 109 chr15 17044038 17044395 -84336126 + THE1C LTR MaLR 59 375 0 1331 145 9 13 chr15 17044395 17044623 -84335898 + THE1C-int LTR MaLR 1 227 -1353 1623 104 0 0 chr15 17044623 17044853 -84335668 + MER4E LTR ERV1 1 230 -549 2227 121 3 0 chr15 17044853 17045151 -84335370 + AluSp SINE Alu 1 299 -14 728 119 8 0 chr15 17045169 17045287 -84335234 + (GGAA)n Simple_repeat Simple_repeat 2 120 0 2191 147 98 6 chr15 17045288 17045711 -84334810 + MER4E LTR ERV1 217 650 -129 6657 160 7 29 chr15 17045730 17046939 -84333582 + THE1-int LTR MaLR 416 1578 -2 10155 89 12 1 chr15 17046972 17048355 -84332166 + HERVL-A2 LTR ERVL 4258 5654 0 2993 81 17 2 chr15 17048355 17048762 -84331759 + MLT2A2 LTR ERVL 1 413 -40 21 0 0 0 chr15 17048767 17048788 -84331733 + AT_rich Low_complexity Low_complexity 1 21 0 247 73 98 0 chr15 17048794 17048835 -84331686 - MLT2A2 LTR ERVL -10 443 399 1285 232 23 31 chr15 17054350 17054738 -84325783 - MLT1B LTR MaLR 0 390 6 435 305 21 21 chr15 17055133 17055323 -84325198 + L1MEc LINE L1 390 579 -5817 812 164 10 77 chr15 17055395 17055590 -84324931 - MER4A LTR ERV1 -110 554 373 240 99 380 14 chr15 17055645 17055716 -84324805 - MER4A LTR ERV1 -567 97 1 204 88 59 0 chr15 17057078 17057112 -84323409 + (CCTTG)n Simple_repeat Simple_repeat 4 39 0 1578 151 27 83 chr15 17057134 17057579 -84322942 + HSREP522 Satellite telomeric 3 422 -82 981 197 5 0 chr15 17057598 17057801 -84322720 - L1 LINE L1 -1998 4148 3945 619 175 8 42 chr15 17057832 17057952 -84322569 - FLAM_A SINE Alu -17 116 1 21 0 0 0 chr15 17058005 17058026 -84322495 + AT_rich Low_complexity Low_complexity 1 21 0 5697 137 15 18 chr15 17058026 17059116 -84321405 + L1MA5A LINE L1 5174 6264 -33 21 0 0 0 chr15 17059130 17059151 -84321370 + AT_rich Low_complexity Low_complexity 1 21 0 2432 146 51 91 chr15 17059860 17060484 -84320037 - L1MB2 LINE L1 -1 6170 5572 22 0 0 0 chr15 17060552 17060574 -84319947 + AT_rich Low_complexity Low_complexity 1 22 0 2396 76 0 22 chr15 17060709 17061023 -84319498 - AluY SINE Alu -4 307 1 276 30 0 0 chr15 17061298 17061331 -84319190 + (CA)n Simple_repeat Simple_repeat 2 34 0 241 240 0 0 chr15 17062732 17062782 -84317739 + MER3 DNA MER1_type 41 90 -119 * 740 173 123 17 chr15 17062750 17062929 -84317592 - MER3 DNA MER1_type -11 198 1 705 152 3 43 chr15 17063374 17063575 -84316946 - L1MB8 LINE L1 -2 6182 5989 807 188 0 6 chr15 17063595 17063760 -84316761 - L1MB8 LINE L1 -170 6008 5845 278 310 9 0 chr15 17064595 17064708 -84315813 + (TG)n Simple_repeat Simple_repeat 2 115 0 1639 151 14 92 chr15 17066419 17066790 -84313731 + MER2 DNA MER2_type 3 344 0 387 0 0 0 chr15 17067215 17067258 -84313263 + (CA)n Simple_repeat Simple_repeat 1 43 0 194 114 0 23 chr15 17067261 17067305 -84313216 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 247 204 0 19 chr15 17068278 17068332 -84312189 + L2 LINE L2 3217 3269 -3 600 314 64 13 chr15 17068917 17069153 -84311368 + L2 LINE L2 2729 2976 -338 842 149 32 0 chr15 17069158 17069312 -84311209 - L1MB1 LINE L1 -1 6167 6009 1959 120 11 0 chr15 17071069 17071335 -84309186 - AluSx SINE Alu -43 269 1 26 0 0 0 chr15 17074130 17074156 -84306365 + AT_rich Low_complexity Low_complexity 1 26 0 213 226 113 47 chr15 17074486 17074592 -84305929 + MIR SINE MIR 100 212 -50 340 310 129 19 chr15 17074807 17074962 -84305559 + MIR3 SINE MIR 13 184 -24 2283 123 0 0 chr15 17075799 17076109 -84304412 + AluSq SINE Alu 1 310 -3 278 26 26 0 chr15 17076864 17076903 -84303618 + (TA)n Simple_repeat Simple_repeat 1 40 0 22 56 0 0 chr15 17077748 17077784 -84302737 + AT_rich Low_complexity Low_complexity 1 36 0 809 176 8 0 chr15 17077784 17077915 -84302606 + AluJo/FLAM SINE Alu 1 132 -180 1611 178 59 0 chr15 17077917 17078204 -84302317 + AluJo SINE Alu 1 304 -8 254 318 0 0 chr15 17078395 17078483 -84302038 + MIR SINE MIR 175 262 0 2370 83 0 7 chr15 17078564 17078865 -84301656 - AluY SINE Alu -12 299 1 253 260 57 24 chr15 17078902 17079025 -84301496 - L1ME4a LINE L1 -51 6070 5944 1982 115 3 31 chr15 17079192 17079478 -84301043 + AluSq SINE Alu 5 282 -31 180 0 0 0 chr15 17079479 17079499 -84301022 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 616 251 16 43 chr15 17079509 17079764 -84300757 + L1MEd LINE L1 1010 1257 -4862 881 108 0 47 chr15 17080766 17080914 -84299607 - AluSp/q SINE Alu 0 313 173 2561 159 38 4 chr15 17080914 17081410 -84299111 - L1MA4 LINE L1 -290 6010 5498 2170 129 0 3 chr15 17082679 17082989 -84297532 + AluSx SINE Alu 1 309 -3 1364 236 47 4 chr15 17083663 17083939 -84296582 - L1ME4a LINE L1 -465 5701 5391 2170 91 0 3 chr15 17083939 17084224 -84296297 - AluSx SINE Alu -24 288 5 1364 236 47 4 chr15 17084224 17084410 -84296111 - L1ME4a LINE L1 -775 5391 5214 2113 112 3 0 chr15 17084718 17085004 -84295517 + AluSg SINE Alu 1 287 -23 24 0 0 0 chr15 17085007 17085031 -84295490 + AT_rich Low_complexity Low_complexity 1 24 0 2187 95 3 0 chr15 17085243 17085549 -84294972 + AluSx SINE Alu 1 307 0 1970 142 0 28 chr15 17086082 17086400 -84294121 + AluSx SINE Alu 1 309 -3 2186 108 7 0 chr15 17087086 17087373 -84293148 + AluSx SINE Alu 1 289 -23 635 121 0 10 chr15 17087763 17087862 -84292659 - MER4A LTR ERV1 -566 98 1 944 121 79 11 chr15 17087862 17088052 -84292469 + L1MA3 LINE L1 5705 5907 -398 * 2513 195 83 10 chr15 17088050 17088727 -84291794 - L1 LINE L1 -1446 4700 3975 * 6545 122 28 23 chr15 17088719 17090207 -84290314 - L1PA3 LINE L1 -2 6153 4674 1960 113 0 21 chr15 17090207 17090516 -84290005 - AluSx SINE Alu 0 311 9 6545 122 28 23 chr15 17090516 17090736 -84289785 - L1PA3 LINE L1 -1481 4674 3052 2111 118 6 9 chr15 17090737 17091069 -84289452 - L1PB2 LINE L1 0 7570 7240 2798 200 25 27 chr15 17091069 17092032 -84288489 - L1PB2 LINE L1 -622 6948 5996 2953 214 32 10 chr15 17092053 17092966 -84287555 - L1PB2 LINE L1 -3114 4451 3509 601 220 10 171 chr15 17092970 17093300 -84287221 - LTR28 LTR ERV1 -136 894 1 7081 226 42 8 chr15 17093301 17094925 -84285596 - L1M1 LINE L1 -5870 1695 17 376 191 0 0 chr15 17096539 17096623 -84283898 - L1MA4 LINE L1 -179 6121 6041 601 219 46 13 chr15 17096642 17096793 -84283728 + FRAM SINE Alu 1 156 -20 1640 212 3 0 chr15 17096795 17097097 -84283424 + AluJo SINE Alu 1 303 -9 235 226 21 0 chr15 17097218 17097304 -84283217 + L1MB5 LINE L1 5838 5932 -238 1803 141 25 14 chr15 17097341 17097625 -84282896 + AluSx SINE Alu 1 287 -25 2311 258 89 48 chr15 17097994 17100383 -84280138 - L1M4 LINE L1 -3644 3000 509 237 189 116 11 chr15 17100432 17100527 -84279994 - L1M4 LINE L1 -3081 3065 2961 1275 243 14 7 chr15 17100527 17100815 -84279706 - AluJb SINE Alu -22 290 1 290 203 40 124 chr15 17100906 17101108 -84279413 + MER53 DNA DNA 5 189 0 1015 258 0 14 chr15 17101833 17102054 -84278467 - AluJo SINE Alu -82 230 13 314 304 5 77 chr15 17102489 17102683 -84277838 + MLT1E2 LTR MaLR 1 180 -446 23 54 0 0 chr15 17104595 17104632 -84275889 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr15 17105432 17105464 -84275057 + AT_rich Low_complexity Low_complexity 1 32 0 3423 210 57 27 chr15 17106992 17108895 -84271626 - L1MA8 LINE L1 -3 6288 4326 4837 135 66 7 chr15 17108917 17109868 -84270653 - L1MA2 LINE L1 0 6304 5298 516 256 175 6 chr15 17110460 17110820 -84269701 + L1MB2 LINE L1 1071 1491 -4822 568 292 74 19 chr15 17110857 17111295 -84269226 + L1MB2 LINE L1 1363 2223 -4160 427 225 100 50 chr15 17111459 17111896 -84268625 + L1MB2 LINE L1 2137 2611 -3771 281 280 146 0 chr15 17112143 17112391 -84268130 + L1MB2 LINE L1 2837 3119 -3263 804 281 30 9 chr15 17112400 17112731 -84267790 + L1MB2 LINE L1 4757 5094 -1288 447 251 170 0 chr15 17112726 17112949 -84267572 + L1MB2 LINE L1 5914 6174 -233 * 2223 93 10 7 chr15 17112975 17113275 -84267246 + AluSx SINE Alu 1 301 -11 802 282 64 88 chr15 17114159 17114783 -84265738 + L1M3 LINE L1 2 610 -5345 2756 236 68 55 chr15 17114826 17115450 -84265071 + L1M3 LINE L1 3978 4592 -1464 2194 106 0 7 chr15 17115450 17115733 -84264788 - AluSg SINE Alu -29 281 1 2756 236 68 55 chr15 17115733 17116473 -84264048 + L1M3 LINE L1 4592 5367 -689 376 183 0 0 chr15 17116482 17116553 -84263968 + L1PB4 LINE L1 6045 6115 -41 2129 84 18 0 chr15 17117160 17117478 -84263043 - AluSc SINE Alu 0 323 1 398 298 109 75 chr15 17118296 17118735 -84261786 + L1M2 LINE L1 613 1066 -5783 2206 117 3 3 chr15 17119016 17119315 -84261206 + AluSg SINE Alu 1 299 -11 2533 114 13 8 chr15 17120511 17120904 -84259617 + L1PA12 LINE L1 5774 6168 0 502 259 0 32 chr15 17121226 17121411 -84259110 - MER104 DNA MER2_type -1 179 1 562 292 93 40 chr15 17121513 17121761 -84258760 - MIR SINE MIR -1 261 4 264 30 0 0 chr15 17122974 17123007 -84257514 + (TG)n Simple_repeat Simple_repeat 2 34 0 262 367 36 36 chr15 17123507 17123646 -84256875 - MER5B DNA MER1_type 0 178 40 733 178 0 0 chr15 17123651 17123769 -84256752 + FLAM_A SINE Alu 1 118 -15 1066 198 156 11 chr15 17123943 17124206 -84256315 - AluJb SINE Alu -1 301 1 183 305 85 0 chr15 17124831 17124890 -84255631 - L2 LINE L2 -50 3263 3200 325 299 101 22 chr15 17125954 17126164 -84254357 + MIR SINE MIR 7 231 -31 572 189 9 9 chr15 17128139 17128245 -84252276 + U6 snRNA snRNA 1 106 -1 295 371 53 0 chr15 17128938 17129089 -84251432 - MIR SINE MIR -47 215 57 3128 163 8 9 chr15 17129471 17129999 -84250522 - MER1A DNA MER1_type 0 527 1 300 192 0 0 chr15 17130227 17130279 -84250242 - MER91B DNA MER1_type -60 130 79 535 283 184 13 chr15 17131269 17131654 -84248867 - MLT1L LTR MaLR -164 451 1 181 296 56 28 chr15 17131660 17131731 -84248790 - L2 LINE L2 -565 2749 2677 852 224 47 47 chr15 17131736 17131950 -84248571 - MER58A DNA MER1_type -3 221 8 2058 154 7 0 chr15 17133729 17134035 -84246486 + AluSc SINE Alu 1 308 -1 1381 182 140 53 chr15 17134138 17134627 -84245894 - LTR61 LTR ERV1 -2 593 1 28 61 0 0 chr15 17135121 17135170 -84245351 + AT_rich Low_complexity Low_complexity 1 49 0 47 61 0 0 chr15 17136214 17136296 -84244225 + AT_rich Low_complexity Low_complexity 1 82 0 396 271 88 123 chr15 17137123 17138032 -84242489 + L1M4 LINE L1 528 1373 -5476 1326 184 42 16 chr15 17140045 17140174 -84240347 - L1MA9 LINE L1 -387 5925 5801 261 0 0 0 chr15 17140174 17140203 -84240318 + (TG)n Simple_repeat Simple_repeat 2 30 0 1326 184 42 16 chr15 17140203 17140382 -84240139 - L1MA9 LINE L1 -511 5801 5609 1294 181 39 4 chr15 17140376 17140657 -84239864 + L1MA9 LINE L1 5972 6262 -50 * 286 187 22 112 chr15 17140909 17141043 -84239478 - L1MEc LINE L1 -4258 2138 2017 1595 118 29 105 chr15 17141044 17141385 -84239136 - AluYb8 SINE Alu 0 317 1 306 0 0 0 chr15 17142563 17142597 -84237924 + (CA)n Simple_repeat Simple_repeat 1 34 0 2128 119 7 10 chr15 17142777 17143079 -84237442 + AluSx SINE Alu 1 301 -11 342 123 231 0 chr15 17145208 17145273 -84235248 + MADE1 DNA Mariner 1 80 0 1080 275 23 26 chr15 17146583 17146815 -84233706 + L1M4 LINE L1 3355 3586 -3262 3033 100 13 11 chr15 17146815 17147277 -84233244 - L1PA10 LINE L1 0 6168 5706 1080 275 23 26 chr15 17147277 17147692 -84232829 + L1M4 LINE L1 3586 4000 -2848 348 125 0 0 chr15 17147890 17147954 -84232567 + (TCTCTG)n Simple_repeat Simple_repeat 3 66 0 2006 86 50 4 chr15 17147954 17148233 -84232288 - AluY SINE Alu -19 292 1 1839 164 3 3 chr15 17151103 17151396 -84229125 - AluSg1 SINE Alu -15 294 2 1322 139 22 0 chr15 17152069 17152292 -84228229 + L1MA4 LINE L1 6070 6297 -3 2095 126 14 3 chr15 17152351 17152645 -84227876 + AluSx SINE Alu 1 297 -15 387 0 0 0 chr15 17153072 17153115 -84227406 + (TG)n Simple_repeat Simple_repeat 1 43 0 522 329 83 28 chr15 17154243 17154678 -84225843 + L1MCb LINE L1 114 572 -5473 2214 128 0 0 chr15 17156811 17157123 -84223398 - AluSx SINE Alu 0 312 1 476 291 41 67 chr15 17157193 17157268 -84223253 - L1MC/D LINE L1 -2069 5716 5641 2168 91 0 4 chr15 17157268 17157572 -84222949 + AluSg1 SINE Alu 6 308 0 476 291 41 67 chr15 17157572 17157839 -84222682 - L1MC/D LINE L1 -2144 5641 5382 1889 244 65 2 chr15 17157870 17158300 -84222221 + LTR32 LTR ERVL 15 471 0 919 299 19 23 chr15 17158318 17158852 -84221669 + HERVL32 LTR ERVL 19 590 -2828 1747 253 20 44 chr15 17158861 17159418 -84221103 + HERVL32 LTR ERVL 2309 2856 -562 1150 253 37 53 chr15 17159538 17160220 -84220301 + HERVL32 LTR ERVL 612 1326 -2092 * 3173 239 65 63 chr15 17160213 17161265 -84219256 + HERVL32 LTR ERVL 1627 2680 -738 1501 216 24 32 chr15 17161291 17161671 -84218850 + MLT1B LTR MaLR 14 390 0 1238 313 55 43 chr15 17163312 17164072 -84216449 + MER89-int LTR ERV1 3526 4294 -2507 1813 178 41 25 chr15 17164883 17165277 -84215244 - L1MA7 LINE L1 -25 6266 5867 648 49 0 0 chr15 17165283 17165364 -84215157 + L1M3 LINE L1 5389 5469 -865 1719 218 39 13 chr15 17165366 17165751 -84214770 - MSTD LTR MaLR -1 395 1 2207 244 150 55 chr15 17165766 17166117 -84214404 - MSTD-int LTR MaLR -17 1718 1402 5103 38 10 3 chr15 17166117 17166731 -84213790 + L1PA3 LINE L1 5538 6155 0 2207 244 150 55 chr15 17166731 17167181 -84213340 - MSTD-int LTR MaLR -333 1402 841 1600 260 30 2 chr15 17167242 17167673 -84212848 - MSTD-int LTR MaLR -1291 444 2 1434 209 38 62 chr15 17167675 17168048 -84212473 - MSTD LTR MaLR 0 396 33 2064 121 4 0 chr15 17171564 17171867 -84208654 - AluSx SINE Alu 0 304 1 625 255 1 10 chr15 17172592 17172774 -84207747 - L1MB1 LINE L1 0 6168 6008 2490 220 39 15 chr15 17172804 17173443 -84207078 - L1 LINE L1 -1888 4258 3601 1969 89 4 0 chr15 17173443 17173717 -84206804 + AluY SINE Alu 38 312 0 512 208 78 13 chr15 17173739 17173893 -84206628 - L1 LINE L1 -2645 3501 3338 263 234 31 8 chr15 17174244 17174372 -84206149 + (TTA)n Simple_repeat Simple_repeat 3 133 0 24 53 0 0 chr15 17174384 17174422 -84206099 + AT_rich Low_complexity Low_complexity 1 38 0 675 274 145 13 chr15 17174565 17174945 -84205576 + MLT1D LTR MaLR 1 430 -75 3971 258 68 25 chr15 17174955 17177275 -84203246 + HERVL74 LTR ERVL 1196 3652 -2033 522 236 51 67 chr15 17177279 17177457 -84203064 + HERVL74 LTR ERVL 3890 4064 -1621 1063 291 43 39 chr15 17177482 17178106 -84202415 + HERVL74 LTR ERVL 4611 5268 -417 603 268 24 24 chr15 17178124 17178329 -84202192 + HERVL74 LTR ERVL 5393 5597 -88 805 285 43 32 chr15 17178387 17178734 -84201787 + MER74B LTR ERVL 60 410 -212 1662 308 102 34 chr15 17180224 17181197 -84199324 - L1M4b LINE L1 -5814 1045 7 243 299 79 46 chr15 17181202 17181530 -84198991 - L1MCa LINE L1 -4761 1665 1327 11974 201 39 30 chr15 17181719 17185078 -84195443 - L1PA13 LINE L1 -3424 3373 1 2353 211 72 15 chr15 17185084 17185629 -84194892 + L1MC3 LINE L1 5580 6155 -1630 * 8067 202 41 8 chr15 17185624 17188257 -84192264 + L1MA9 LINE L1 3356 6081 -231 466 221 31 0 chr15 17188259 17188386 -84192135 + L1MA9 LINE L1 6180 6310 -2 1448 201 36 0 chr15 17188388 17188747 -84191774 + L1 LINE L1 4300 4671 -1475 775 284 90 8 chr15 17188747 17189113 -84191408 - L2 LINE L2 -1564 1750 1355 21 36 0 0 chr15 17189197 17189225 -84191296 + AT_rich Low_complexity Low_complexity 1 28 0 402 406 31 16 chr15 17189981 17190543 -84189978 + L2 LINE L2 2722 3292 -21 2270 74 3 14 chr15 17193137 17193464 -84187057 + AluY SINE Alu 1 324 0 254 73 24 0 chr15 17193595 17193636 -84186885 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 223 302 16 0 chr15 17193812 17193875 -84186646 + (CA)n Simple_repeat Simple_repeat 1 64 0 2199 184 26 16 chr15 17194026 17194456 -84186065 - Tigger2a DNA MER2_type 0 434 1 279 299 0 59 chr15 17195285 17195472 -84185049 + CT-rich Low_complexity Low_complexity 3 178 0 226 290 32 25 chr15 17196227 17196367 -84184154 + MIR SINE MIR 60 197 -65 279 54 0 0 chr15 17197675 17197712 -84182809 + (TA)n Simple_repeat Simple_repeat 2 38 0 1534 109 23 9 chr15 17197820 17198040 -84182481 + PABL_B LTR ERV1 445 667 0 2197 103 3 7 chr15 17198256 17198557 -84181964 + AluSx SINE Alu 1 300 -12 673 161 0 8 chr15 17198557 17198681 -84181840 - AluJo/FLAM SINE Alu -188 124 2 198 71 0 0 chr15 17199104 17199132 -84181389 + (CA)n Simple_repeat Simple_repeat 2 29 0 291 28 0 0 chr15 17199311 17199347 -84181174 + (CA)n Simple_repeat Simple_repeat 1 36 0 213 94 0 0 chr15 17199434 17199466 -84181055 + (CA)n Simple_repeat Simple_repeat 2 33 0 288 0 0 0 chr15 17199549 17199581 -84180940 + (CA)n Simple_repeat Simple_repeat 2 33 0 2064 117 0 0 chr15 17200000 17200274 -84180247 - AluSx SINE Alu -38 274 1 8767 119 16 2 chr15 17200375 17202172 -84178349 - L1P4 LINE L1 -350 5818 4002 281 291 73 24 chr15 17202556 17202707 -84177814 + MIR3 SINE MIR 4 159 -69 272 254 0 0 chr15 17202764 17202819 -84177702 - L2 LINE L2 -8 3264 3210 296 301 44 18 chr15 17202889 17203002 -84177519 + L1MC5 LINE L1 7798 7913 -48 1696 173 16 36 chr15 17203013 17203320 -84177201 - AluJo SINE Alu -11 301 1 322 291 82 6 chr15 17203323 17203481 -84177040 - MIR SINE MIR -59 203 34 447 19 0 0 chr15 17203994 17204046 -84176475 + (TG)n Simple_repeat Simple_repeat 2 53 0 267 203 0 0 chr15 17205084 17205143 -84175378 + (TG)n Simple_repeat Simple_repeat 1 59 0 267 323 54 8 chr15 17205238 17205368 -84175153 + L3 LINE CR1 243 378 -1199 392 259 105 49 chr15 17205423 17205670 -84174851 - L1MC4a LINE L1 -1642 6166 5906 219 140 0 123 chr15 17206062 17206119 -84174402 + L2 LINE L2 3262 3311 -2 457 298 160 0 chr15 17207195 17207383 -84173138 + MIR SINE MIR 42 259 -3 232 243 186 0 chr15 17207498 17207568 -84172953 + L2 LINE L2 3190 3272 -41 222 118 0 0 chr15 17207585 17207619 -84172902 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 1296 218 19 16 chr15 17210185 17210502 -84170019 + MER65A LTR ERV1 1 318 -127 1094 297 54 50 chr15 17210503 17211147 -84169374 - MER89-int LTR ERV1 -1669 5132 4486 701 229 127 0 chr15 17211770 17211927 -84168594 - MER89-int LTR ERV1 -1594 5207 5031 269 313 88 33 chr15 17213045 17213285 -84167236 + L1MCb LINE L1 571 823 -5222 2424 71 0 3 chr15 17213388 17213685 -84166836 + AluY SINE Alu 1 296 -15 7366 37 6 0 chr15 17213743 17214575 -84165946 + L1PA5 LINE L1 5317 6153 -1 567 286 95 42 chr15 17216961 17217391 -84163130 - L1MC4a LINE L1 -601 5732 5280 279 247 43 0 chr15 17217401 17217494 -84163027 - L1MC4a LINE L1 -853 5293 5197 1221 299 39 29 chr15 17217647 17218268 -84162253 - L1MC3 LINE L1 -621 7164 6538 281 231 11 22 chr15 17218340 17218368 -84162153 + (TAGA)n Simple_repeat Simple_repeat 4 31 -62 186 43 0 0 chr15 17218368 17218391 -84162130 + (CATA)n Simple_repeat Simple_repeat 3 25 0 281 231 11 22 chr15 17218391 17218453 -84162068 + (TAGA)n Simple_repeat Simple_repeat 31 93 0 657 283 52 13 chr15 17218681 17218911 -84161610 - MER89-int LTR ERV1 -3076 3725 3487 1981 203 5 3 chr15 17219240 17219614 -84160907 - L1PA16 LINE L1 -290 5876 5502 397 214 0 0 chr15 17219613 17219697 -84160824 - L1P4 LINE L1 -581 5585 5502 * 501 146 0 0 chr15 17219696 17219778 -84160743 - L1P4 LINE L1 -581 5585 5504 2519 219 23 23 chr15 17219778 17220806 -84159715 - L1P4 LINE L1 -580 5586 4562 4756 254 40 19 chr15 17220812 17222325 -84158196 + L1P4 LINE L1 3001 4544 -1602 793 279 50 47 chr15 17222371 17222751 -84157770 - MER89-int LTR ERV1 -2111 4690 4310 696 320 28 41 chr15 17222749 17223112 -84157409 - MER89-int LTR ERV1 -2647 4154 3797 * 483 299 46 10 chr15 17223158 17223352 -84157169 - MER89-int LTR ERV1 -3095 3706 3506 366 136 0 0 chr15 17223938 17223997 -84156524 + Alu SINE Alu 242 300 -2 1850 155 0 0 chr15 17225522 17225799 -84154722 + AluSx SINE Alu 11 287 -25 1126 228 36 69 chr15 17227072 17227463 -84153058 + MLT1B LTR MaLR 2 379 -11 200 303 108 59 chr15 17228426 17228750 -84151771 - L2 LINE L2 -1648 1666 1327 407 260 69 98 chr15 17228834 17229007 -84151514 - L1M4c LINE L1 -4258 2475 1928 1493 230 22 0 chr15 17229008 17229325 -84151196 + MER7A DNA MER2_type 2 323 -23 2025 126 3 20 chr15 17229330 17229632 -84150889 - AluSx SINE Alu -15 297 1 568 318 30 35 chr15 17229682 17230050 -84150471 - L1M4c LINE L1 -4874 1779 1414 262 340 0 0 chr15 17230341 17230447 -84150074 + L1MCb LINE L1 726 831 -5214 404 152 0 29 chr15 17231892 17231997 -84148524 + (TG)n Simple_repeat Simple_repeat 2 103 0 674 262 83 53 chr15 17233743 17234283 -84146238 - L1MC/D LINE L1 -771 5375 5170 23 33 0 0 chr15 17234308 17234338 -84146183 + AT_rich Low_complexity Low_complexity 1 30 0 2175 277 92 14 chr15 17234449 17235320 -84145201 - L1MC3 LINE L1 -657 7128 6190 391 288 75 27 chr15 17235286 17235581 -84144940 + L1MC3 LINE L1 5904 6212 -1573 * 26 0 0 0 chr15 17235684 17235710 -84144811 + AT_rich Low_complexity Low_complexity 1 26 0 1855 102 102 0 chr15 17239691 17239957 -84140564 + AluSp SINE Alu 1 293 -20 22 35 0 0 chr15 17240049 17240078 -84140443 + AT_rich Low_complexity Low_complexity 1 29 0 264 30 0 0 chr15 17240150 17240183 -84140338 + (TG)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr15 17240195 17240217 -84140304 + AT_rich Low_complexity Low_complexity 1 22 0 424 284 70 0 chr15 17240749 17240950 -84139571 - L1MD3 LINE L1 -11 7984 7770 317 289 86 0 chr15 17241269 17241421 -84139100 - L1MEc LINE L1 -3711 2715 2551 317 291 101 4 chr15 17241509 17241736 -84138785 - L1MEc LINE L1 -4093 2333 2085 236 306 55 25 chr15 17241752 17242091 -84138430 - L1MEc LINE L1 -4395 2031 1680 320 228 30 30 chr15 17243165 17243266 -84137255 + L1ME LINE L1 5698 5798 -368 1174 286 101 14 chr15 17243335 17243970 -84136551 + L1PA13 LINE L1 529 1258 -5529 2358 168 21 9 chr15 17243973 17244397 -84136124 + L1PA13 LINE L1 1396 1824 -4963 * 2959 210 34 16 chr15 17244389 17245127 -84135394 + L1MA7 LINE L1 5541 6291 0 378 279 80 15 chr15 17245150 17245351 -84135170 + L1M4 LINE L1 5184 5397 -749 462 81 23 23 chr15 17245477 17245563 -84134958 + (GAAA)n Simple_repeat Simple_repeat 4 89 0 221 32 0 32 chr15 17245563 17245594 -84134927 + (GGGA)n Simple_repeat Simple_repeat 2 31 0 498 311 0 0 chr15 17246018 17246153 -84134368 + MER70B LTR ERVL 90 224 -354 367 271 211 12 chr15 17246191 17246438 -84134083 - L1MCa LINE L1 -4206 2220 1925 * 1528 160 18 0 chr15 17246430 17246711 -84133810 - L1 LINE L1 -1404 4742 4457 395 174 0 54 chr15 17246730 17246822 -84133699 + L1MA2 LINE L1 6218 6304 0 625 292 65 26 chr15 17246885 17247366 -84133155 + L1MC3 LINE L1 5254 6040 -160 672 305 38 0 chr15 17247504 17247717 -84132804 - HERVL74 LTR ERVL -3785 1900 1680 2035 130 0 17 chr15 17248303 17248596 -84131925 + AluSx SINE Alu 5 292 -20 399 220 0 0 chr15 17248598 17248689 -84131832 + (TA)n Simple_repeat Simple_repeat 1 91 0 3692 35 12 5 chr15 17248862 17249291 -84131230 + L1PA3 LINE L1 5723 6154 -1 1474 277 63 39 chr15 17249292 17250244 -84130277 + L1MA3 LINE L1 2265 3403 -4163 2762 247 38 23 chr15 17250385 17251256 -84129265 + L1P LINE L1 2790 3673 -2473 3642 203 60 5 chr15 17251259 17252130 -84128391 + L1MA3 LINE L1 4418 5336 -2229 * 6489 131 31 1 chr15 17252124 17253204 -84127317 + L1MA3 LINE L1 6614 7724 0 3791 190 51 29 chr15 17253198 17253852 -84126669 + L1 LINE L1 3026 3711 -2435 * 216 0 0 0 chr15 17253852 17253876 -84126645 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 3791 190 51 29 chr15 17253876 17254216 -84126305 + L1 LINE L1 3711 4042 -2104 1874 204 25 32 chr15 17254218 17254625 -84125896 + MSTB LTR MaLR 23 426 0 713 296 16 11 chr15 17254729 17254915 -84125606 + L2 LINE L2 2889 3075 -238 674 191 0 4 chr15 17254918 17255050 -84125471 + L1MA7 LINE L1 5997 6133 -167 1044 191 123 52 chr15 17255051 17255360 -84125161 + MER2 DNA MER2_type 12 342 -3 608 150 78 7 chr15 17255362 17255515 -84125006 + L1MA8 LINE L1 6107 6270 -21 399 275 69 61 chr15 17255801 17256048 -84124473 + L2 LINE L2 3065 3313 0 36 0 0 0 chr15 17256051 17256087 -84124434 + AT_rich Low_complexity Low_complexity 1 36 0 198 287 0 0 chr15 17256428 17256515 -84124006 + C-rich Low_complexity Low_complexity 1 87 0 1956 137 0 0 chr15 17257020 17257319 -84123202 - AluSq SINE Alu -14 299 1 786 180 0 0 chr15 17257942 17258120 -84122401 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 486 300 33 42 chr15 17258120 17258360 -84122161 - MIR SINE MIR -12 250 13 236 184 224 31 chr15 17258492 17258590 -84121931 - MER103 DNA DNA -43 123 7 1795 239 86 23 chr15 17259446 17259922 -84120599 + MER77 LTR ERV1 64 569 -36 5472 84 5 5 chr15 17260227 17260962 -84119559 - L1PA10 LINE L1 -9 6159 5425 231 319 17 17 chr15 17261063 17261179 -84119342 + G-rich Low_complexity Low_complexity 4 119 0 1815 137 0 0 chr15 17261646 17261930 -84118591 + AluSx SINE Alu 18 301 -11 2171 103 0 10 chr15 17262087 17262397 -84118124 + AluSx SINE Alu 1 307 -5 2017 132 0 0 chr15 17262609 17262913 -84117608 + AluSx SINE Alu 1 304 -8 1335 172 47 0 chr15 17263189 17263445 -84117076 - AluJo SINE Alu -15 297 30 231 175 62 0 chr15 17263482 17263537 -84116984 + Alu SINE Alu 1 50 -253 2682 86 25 171 chr15 17263667 17264227 -84116294 - THE1C-int LTR MaLR -1102 478 1 1753 116 99 63 chr15 17264227 17264275 -84116246 - THE1C LTR MaLR 0 375 330 2144 95 3 0 chr15 17264275 17264609 -84115912 - AluY SINE Alu 0 335 1 2241 87 3 3 chr15 17264610 17264910 -84115611 - AluY SINE Alu -11 300 1 1753 116 99 63 chr15 17264910 17265220 -84115301 - THE1C LTR MaLR -44 331 1 834 181 0 62 chr15 17265220 17265238 -84115283 - AluJo SINE Alu -161 151 133 2222 90 0 3 chr15 17265238 17265538 -84114983 - AluY SINE Alu -12 299 1 1936 143 0 3 chr15 17265538 17265838 -84114683 - AluSx SINE Alu -12 300 1 834 181 0 62 chr15 17265838 17265978 -84114543 - AluJo SINE Alu -177 135 2 676 138 35 9 chr15 17265978 17266094 -84114427 - MLT1D LTR MaLR -386 119 1 250 276 198 0 chr15 17266180 17266295 -84114226 + Charlie7 DNA MER1_type 29 166 -2446 302 275 24 0 chr15 17266295 17266415 -84114106 - LTR50 LTR ERVL 0 795 402 959 273 85 48 chr15 17266491 17266546 -84113975 + Charlie7 DNA MER1_type 220 271 -2341 1704 178 0 3 chr15 17266546 17266850 -84113671 - AluJo SINE Alu -6 306 4 959 273 85 48 chr15 17266850 17267278 -84113243 + Charlie7 DNA MER1_type 271 721 -1891 407 261 5 72 chr15 17267277 17267327 -84113194 + Charlie7 DNA MER1_type 2420 2472 -140 * 2069 114 7 0 chr15 17267327 17267617 -84112904 + AluSx SINE Alu 1 292 -20 407 261 5 72 chr15 17267617 17267773 -84112748 + Charlie7 DNA MER1_type 2472 2612 0 2078 121 3 0 chr15 17267817 17268115 -84112406 + AluSq SINE Alu 1 299 -14 202 321 0 18 chr15 17268325 17268381 -84112140 - L2 LINE L2 -209 3063 3009 323 190 0 0 chr15 17268394 17268452 -84112069 - THE1A LTR MaLR -76 279 222 244 250 0 0 chr15 17268483 17268527 -84111994 + AluJ/monomer SINE Alu 1 44 -89 293 151 31 0 chr15 17268646 17268710 -84111811 + MIR SINE MIR 75 146 -62 320 294 0 12 chr15 17269460 17269545 -84110976 + MIR SINE MIR 5 88 -174 251 288 129 23 chr15 17269720 17269852 -84110669 - L1ME4a LINE L1 -38 6083 5938 411 252 64 9 chr15 17272115 17272242 -84108279 + MIR SINE MIR 34 173 -62 275 190 17 17 chr15 17272687 17272745 -84107776 - MLT1K LTR MaLR -8 580 523 28 29 0 0 chr15 17272750 17272785 -84107736 + AT_rich Low_complexity Low_complexity 1 35 0 2218 83 0 3 chr15 17272791 17273080 -84107441 - AluSq SINE Alu -25 288 1 485 200 147 74 chr15 17273081 17273271 -84107250 - MLT1K LTR MaLR -58 530 327 435 234 8 62 chr15 17273330 17273458 -84107063 + MLT1G LTR MaLR 93 213 -377 396 193 125 0 chr15 17273462 17273550 -84106971 + MLT1G LTR MaLR 471 569 -21 980 170 0 6 chr15 17273976 17274147 -84106374 + AluJb SINE Alu 121 290 -22 1905 155 0 13 chr15 17274150 17274466 -84106055 + AluSx SINE Alu 1 312 0 851 232 171 20 chr15 17274703 17275026 -84105495 - MLT1J LTR MaLR 0 493 139 2376 190 17 85 chr15 17275032 17275547 -84104974 - MER41D LTR ERV1 -22 535 61 2127 109 0 28 chr15 17275547 17275868 -84104653 - AluSq SINE Alu -1 312 1 2376 190 17 85 chr15 17275868 17275926 -84104595 - MER41D LTR ERV1 -496 61 1 500 259 30 15 chr15 17275926 17276061 -84104460 - MLT1J LTR MaLR -371 140 4 2011 90 54 0 chr15 17276141 17276420 -84104101 + AluY SINE Alu 1 294 -17 353 266 146 70 chr15 17276420 17276547 -84103974 + MIR SINE MIR 22 138 -124 1486 189 34 0 chr15 17276547 17276844 -84103677 - AluJo SINE Alu -5 307 1 373 221 110 31 chr15 17276845 17277008 -84103513 + MER104 DNA MER2_type 2 177 -3 353 266 146 70 chr15 17277008 17277077 -84103444 + MIR SINE MIR 137 235 -27 772 84 6 39 chr15 17277387 17277565 -84102956 + (TTAGGG)n Simple_repeat Simple_repeat 5 176 0 518 152 5 33 chr15 17277626 17277810 -84102711 + (TTAGGG)n Simple_repeat Simple_repeat 2 180 0 402 147 0 37 chr15 17277854 17277963 -84102558 + (TTAGGG)n Simple_repeat Simple_repeat 4 108 0 914 258 119 12 chr15 17277994 17278413 -84102108 - MLT1C LTR MaLR -3 464 1 1758 154 0 14 chr15 17279180 17279465 -84101056 - AluJo SINE Alu -21 291 11 1720 252 89 19 chr15 17279484 17280047 -84100474 - MER20B DNA MER1_type -34 749 148 688 268 10 20 chr15 17280413 17280611 -84099910 + MIR SINE MIR 17 212 -50 2126 113 7 0 chr15 17280618 17280919 -84099602 - AluSp SINE Alu -10 303 1 1607 233 37 17 chr15 17281063 17281509 -84099012 - L1MB5 LINE L1 -58 6116 5665 203 276 181 9 chr15 17281572 17281677 -84098844 + MIR SINE MIR 31 153 -109 818 242 14 28 chr15 17281842 17282053 -84098468 - MER63A DNA MER1_type 0 210 3 285 286 164 21 chr15 17282287 17282427 -84098094 + MLT1L LTR MaLR 226 385 -230 1964 107 0 0 chr15 17282931 17283194 -84097327 + AluSc SINE Alu 16 278 -31 183 80 0 0 chr15 17283197 17283222 -84097299 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 1038 126 16 33 chr15 17284660 17284842 -84095679 + AluJo SINE Alu 39 217 -95 266 152 0 0 chr15 17284843 17284894 -84095627 + AluJb SINE Alu 84 125 -177 1308 167 0 67 chr15 17284921 17285220 -84095301 + AluJo SINE Alu 7 285 -27 1946 117 0 0 chr15 17285244 17285518 -84095003 + AluSx SINE Alu 1 274 -38 306 0 0 0 chr15 17285937 17285971 -84094550 + (TG)n Simple_repeat Simple_repeat 2 35 0 213 94 0 0 chr15 17286054 17286086 -84094435 + (TG)n Simple_repeat Simple_repeat 2 33 0 315 0 0 0 chr15 17286171 17286206 -84094315 + (TG)n Simple_repeat Simple_repeat 1 35 0 198 71 0 0 chr15 17286385 17286413 -84094108 + (TG)n Simple_repeat Simple_repeat 2 29 0 369 0 0 0 chr15 17286502 17286543 -84093978 + (TG)n Simple_repeat Simple_repeat 1 41 0 198 71 0 0 chr15 17286722 17286750 -84093771 + (TG)n Simple_repeat Simple_repeat 2 29 0 707 153 0 8 chr15 17287173 17287297 -84093224 + AluJo/FLAM SINE Alu 2 124 -188 2122 107 3 0 chr15 17287297 17287596 -84092925 - AluSx SINE Alu -12 300 1 1055 127 0 13 chr15 17287812 17287969 -84092552 - PABL_B LTR ERV1 0 667 513 421 239 75 93 chr15 17288525 17288996 -84091525 + L1ME2 LINE L1 1790 6101 -132 2091 114 13 0 chr15 17289057 17289363 -84091158 + AluSg SINE Alu 1 310 0 225 171 0 0 chr15 17289390 17289431 -84091090 + L1ME2 LINE L1 6179 6219 -14 662 235 47 35 chr15 17289785 17289955 -84090566 + MIR SINE MIR 69 240 -22 31439 105 8 20 chr15 17290955 17296423 -84084098 + L1PA7 LINE L1 1 5487 -982 258 56 0 0 chr15 17296423 17296459 -84084062 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 31439 105 8 20 chr15 17296459 17297403 -84083118 + L1PA7 LINE L1 5487 6440 -29 887 208 62 21 chr15 17297403 17297644 -84082877 + MER96B DNA MER1_type? 144 394 -23 33 80 0 0 chr15 17297884 17297959 -84082562 + AT_rich Low_complexity Low_complexity 1 75 0 222 370 0 0 chr15 17298102 17298202 -84082319 + GA-rich Low_complexity Low_complexity 3 102 0 3159 121 11 6 chr15 17298289 17298759 -84081762 + MER84 LTR ERVI 36 507 0 1011 105 0 25 chr15 17299268 17299430 -84081091 + L1P4 LINE L1 5333 5490 -671 2467 47 0 19 chr15 17299430 17299747 -84080774 + AluY SINE Alu 1 311 0 2070 264 99 42 chr15 17299937 17300505 -84080016 - L1M4 LINE L1 -1822 4324 3790 2188 84 7 0 chr15 17300505 17300802 -84079719 + AluY SINE Alu 1 299 -12 2070 264 99 42 chr15 17300802 17301376 -84079145 - L1M4 LINE L1 -2356 3790 3117 * 3324 157 51 16 chr15 17301375 17302194 -84078327 - L1PA15 LINE L1 -324 5841 4984 775 41 0 10 chr15 17302194 17302291 -84078230 + L1PA4 LINE L1 6057 6152 -3 3324 157 51 16 chr15 17302291 17302606 -84077915 - L1PA15 LINE L1 -1181 4984 4681 9612 237 22 37 chr15 17302607 17306939 -84073582 - L1PA12 LINE L1 -816 6768 2554 6392 231 31 15 chr15 17306964 17308690 -84071831 + L1PA15 LINE L1 2143 3896 -2250 1704 196 43 0 chr15 17308679 17309051 -84071470 + L1PA15 LINE L1 4846 5233 -913 * 1088 99 13 0 chr15 17309053 17309204 -84071317 + AluSc SINE Alu 150 302 -7 2260 101 0 3 chr15 17309214 17309510 -84071011 + AluSq SINE Alu 1 295 -18 5110 127 6 10 chr15 17309511 17310322 -84070199 + L1PA15 LINE L1 5357 6164 -1 1077 290 110 54 chr15 17310368 17312528 -84067993 - L1PA12 LINE L1 -5025 2556 22 204 140 40 20 chr15 17312749 17312799 -84067722 + T-rich Low_complexity Low_complexity 5 55 0 1857 220 80 78 chr15 17313475 17314112 -84066409 + LTR9B LTR ERV1 7 644 0 401 158 29 0 chr15 17314297 17314436 -84066085 + (TA)n Simple_repeat Simple_repeat 2 144 0 43 0 0 0 chr15 17314441 17314484 -84066037 + AT_rich Low_complexity Low_complexity 1 43 0 201 379 107 12 chr15 17314612 17314781 -84065740 + L2 LINE L2 2725 2909 -405 250 258 11 75 chr15 17314793 17314886 -84065635 + L2 LINE L2 3184 3270 -2 351 280 57 45 chr15 17316234 17316391 -84064130 + L1ME1 LINE L1 5998 6156 -10 1829 154 32 0 chr15 17317127 17317412 -84063109 + AluSx SINE Alu 1 294 -18 23 0 0 0 chr15 17318380 17318403 -84062118 + AT_rich Low_complexity Low_complexity 1 23 0 249 328 0 35 chr15 17318470 17318644 -84061877 + T-rich Low_complexity Low_complexity 2 169 0 39 22 0 0 chr15 17320813 17320859 -84059662 + AT_rich Low_complexity Low_complexity 1 46 0 716 307 137 30 chr15 17321418 17322142 -84058379 - L2 LINE L2 -34 3279 2474 28 79 0 0 chr15 17322212 17322275 -84058246 + AT_rich Low_complexity Low_complexity 1 63 0 1663 268 39 40 chr15 17322434 17323113 -84057408 - L1ME2 LINE L1 -16 6148 5465 1754 191 148 41 chr15 17323116 17323604 -84056917 + MER74A LTR ERVL 19 558 0 437 194 31 0 chr15 17324118 17324216 -84056305 - L1ME2 LINE L1 -744 5418 5318 527 244 39 17 chr15 17324258 17324488 -84056033 - L1ME2 LINE L1 -916 5230 4996 1847 164 13 0 chr15 17324600 17324905 -84055616 + AluSx SINE Alu 1 309 -3 3137 167 22 4 chr15 17325031 17325571 -84054950 + MER44D DNA MER2_type 1 605 0 385 226 11 11 chr15 17325571 17325656 -84054865 + L1MC4 LINE L1 6616 6703 -1339 180 0 0 0 chr15 17325656 17325676 -84054845 + (TG)n Simple_repeat Simple_repeat 2 21 0 26 82 0 0 chr15 17326033 17326094 -84054427 + AT_rich Low_complexity Low_complexity 1 61 0 711 203 120 52 chr15 17326586 17326778 -84053743 - MER20 DNA MER1_type -2 217 13 23 0 0 0 chr15 17330535 17330558 -84049963 + AT_rich Low_complexity Low_complexity 1 23 0 462 18 0 0 chr15 17332121 17332176 -84048345 + (CA)n Simple_repeat Simple_repeat 1 55 0 370 289 141 34 chr15 17332384 17332527 -84047994 - L2 LINE L2 0 3313 3187 223 27 27 27 chr15 17332527 17332564 -84047957 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 370 289 141 34 chr15 17332564 17332683 -84047838 - L2 LINE L2 -126 3187 3023 404 316 188 31 chr15 17332834 17332977 -84047544 - L2 LINE L2 0 3313 3194 223 27 27 27 chr15 17332977 17333014 -84047507 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 404 316 188 31 chr15 17333014 17333284 -84047237 - L2 LINE L2 -119 3194 2835 212 390 39 0 chr15 17333348 17333425 -84047096 - L2 LINE L2 -582 2732 2653 432 0 0 0 chr15 17333435 17333483 -84047038 + (TA)n Simple_repeat Simple_repeat 2 49 0 270 259 89 27 chr15 17334161 17334273 -84046248 + MIR3 SINE MIR 82 200 -8 270 242 17 39 chr15 17334682 17334860 -84045661 + (TTATA)n Simple_repeat Simple_repeat 2 175 0 298 90 51 13 chr15 17334862 17334940 -84045581 + (TA)n Simple_repeat Simple_repeat 2 82 0 1768 145 28 3 chr15 17334988 17335270 -84045251 - MER72 LTR ERV1 0 722 434 1691 191 3 7 chr15 17335272 17335571 -84044950 - MER72 LTR ERV1 -420 302 5 574 206 59 7 chr15 17335581 17335717 -84044804 + MIR SINE MIR 45 187 -75 305 309 100 0 chr15 17335976 17336086 -84044435 + L2 LINE L2 3152 3272 0 22498 28 0 0 chr15 17336434 17339913 -84040608 + L1PA2 LINE L1 2702 6180 0 2341 194 27 27 chr15 17341114 17341636 -84038885 + L1MA9 LINE L1 5267 5783 -385 674 336 47 26 chr15 17341631 17342059 -84038462 + L1MA9 LINE L1 1360 1796 -5700 * 1021 274 102 85 chr15 17342158 17343148 -84037373 - MER52A LTR ERV1 0 1755 630 11615 218 67 27 chr15 17343210 17347879 -84032642 + L1MA9 LINE L1 2061 7021 -710 2428 128 8 31 chr15 17347879 17348263 -84032258 + THE1C LTR MaLR 1 375 0 11615 218 67 27 chr15 17348263 17349005 -84031516 + L1MA9 LINE L1 7021 7731 0 301 98 0 20 chr15 17349000 17349051 -84031470 + L1MA9 LINE L1 5771 5820 -492 * 2026 157 31 19 chr15 17349057 17349472 -84031049 + L1MA9 LINE L1 5892 6311 -1 426 217 33 0 chr15 17349985 17350077 -84030444 + U13 snRNA snRNA 1 95 -9 719 317 117 14 chr15 17350136 17350717 -84029804 - HAL1 LINE L1 -726 1781 1141 424 280 45 91 chr15 17351243 17351486 -84029035 - HAL1 LINE L1 -2185 322 91 204 216 39 0 chr15 17352742 17352793 -84027728 + A-rich Low_complexity Low_complexity 4 56 0 24 0 0 0 chr15 17354484 17354508 -84026013 + AT_rich Low_complexity Low_complexity 1 24 0 456 325 74 12 chr15 17355237 17355400 -84025121 + MIR SINE MIR 20 192 -70 432 263 109 6 chr15 17355616 17355772 -84024749 - MIR SINE MIR 0 262 91 980 144 0 0 chr15 17355938 17356084 -84024437 - AluSg/x SINE Alu -23 289 144 1071 269 13 8 chr15 17356273 17356511 -84024010 - MIR SINE MIR -22 240 2 711 265 59 14 chr15 17357258 17357477 -84023044 + MIR SINE MIR 33 261 -1 180 363 99 0 chr15 17358696 17358787 -84021734 - L2 LINE L2 0 3272 3173 229 318 47 54 chr15 17358886 17359015 -84021506 - MIR3 SINE MIR -31 177 50 215 61 30 0 chr15 17359407 17359440 -84021081 + (TC)n Simple_repeat Simple_repeat 1 34 0 395 200 27 36 chr15 17360067 17360177 -84020344 + L1MA8 LINE L1 6180 6288 -3 457 189 147 32 chr15 17360440 17360630 -84019891 + L1MC3 LINE L1 7574 7785 0 2397 144 100 4 chr15 17360718 17361168 -84019353 - L1PA16 LINE L1 -2 6164 5672 420 49 98 0 chr15 17361186 17361308 -84019213 + (TA)n Simple_repeat Simple_repeat 1 134 0 2034 187 21 15 chr15 17361346 17362035 -84018486 - L1PA16 LINE L1 -534 5632 4939 * 2978 215 12 19 chr15 17362034 17362805 -84017716 + L1PB4 LINE L1 3061 3825 -2321 2107 113 21 0 chr15 17363727 17364018 -84016503 + AluSq SINE Alu 1 297 -16 1341 222 50 7 chr15 17364441 17364743 -84015778 + MSTB LTR MaLR 100 414 -12 748 155 0 0 chr15 17365016 17365132 -84015389 - AluSg/x SINE Alu -21 291 176 271 259 52 26 chr15 17365142 17365258 -84015263 - HAL1b LINE L1 -539 809 691 340 238 156 19 chr15 17365317 17365477 -84015044 - L1ME3A LINE L1 -182 5988 5807 825 61 4 7 chr15 17365597 17365722 -84014799 + MER30B DNA MER1_type 4 106 -84 261 57 0 0 chr15 17365847 17365882 -84014639 + (TC)n Simple_repeat Simple_repeat 1 35 0 362 275 62 42 chr15 17365892 17366097 -84014424 + MLT1B LTR MaLR 181 367 -7 825 291 55 30 chr15 17366212 17366610 -84013911 + MLT1B-int LTR MaLR 264 671 -700 411 358 19 35 chr15 17366909 17367166 -84013355 + MLT1B-int LTR MaLR 1238 1490 -245 3856 218 37 9 chr15 17367866 17369163 -84011358 + L1PB4 LINE L1 4814 6152 -4 21 0 0 0 chr15 17369179 17369200 -84011321 + AT_rich Low_complexity Low_complexity 1 21 0 2078 118 7 11 chr15 17369234 17369512 -84011009 + AluSg SINE Alu 3 281 -29 234 81 0 0 chr15 17369512 17369549 -84010972 + (TATAA)n Simple_repeat Simple_repeat 2 38 0 1476 264 56 38 chr15 17369561 17370322 -84010199 + L1MD2 LINE L1 5117 5896 -463 1762 312 117 26 chr15 17370324 17371414 -84009107 - L1M4b LINE L1 -5650 1209 21 234 262 48 64 chr15 17371479 17371666 -84008855 - L1M1 LINE L1 -4708 1718 1422 622 240 89 27 chr15 17372041 17372266 -84008255 - LTR52-int LTR ERVL -3297 259 21 1019 250 47 47 chr15 17372317 17372697 -84007824 - LTR52 LTR ERVL -38 383 4 4029 201 52 5 chr15 17373058 17373931 -84006590 - MER49 LTR ERV1 -9 914 1 355 248 128 18 chr15 17373937 17374046 -84006475 - MER89-int LTR ERV1 -1653 5148 5028 24 0 0 0 chr15 17374046 17374070 -84006451 + AT_rich Low_complexity Low_complexity 1 24 0 486 266 146 31 chr15 17375858 17376084 -84004437 - MIR SINE MIR 0 262 11 366 311 16 8 chr15 17376135 17376257 -84004264 + MIR SINE MIR 74 196 -66 310 265 183 27 chr15 17376340 17376515 -84004006 - MIR SINE MIR -40 222 30 3130 21 5 3 chr15 17377451 17377825 -84002696 - L1PA4 LINE L1 -5 6150 5776 4364 34 0 0 chr15 17377825 17378349 -84002172 + L1PA4 LINE L1 5275 5798 -357 421 287 28 101 chr15 17378674 17378921 -84001600 - MLT1J LTR MaLR -9 502 274 24 0 0 0 chr15 17379348 17379372 -84001149 + AT_rich Low_complexity Low_complexity 1 24 0 7545 24 7 0 chr15 17379430 17380684 -83999837 + L1PA3 LINE L1 4910 6169 0 22 0 0 0 chr15 17380688 17380710 -83999811 + AT_rich Low_complexity Low_complexity 1 22 0 250 260 111 52 chr15 17383195 17383381 -83997140 - MIR SINE MIR -67 195 4 382 250 167 21 chr15 17383543 17383831 -83996690 + L1ME4a LINE L1 5781 6110 -11 492 204 0 0 chr15 17384006 17384099 -83996422 + LTR55 LTR ERV 1 93 -455 717 266 31 0 chr15 17384126 17384348 -83996173 + LTR55 LTR ERV 235 463 -85 444 352 142 4 chr15 17384803 17385084 -83995437 - L3 LINE CR1 -159 1418 1099 2309 168 44 36 chr15 17386166 17386697 -83993824 - Ricksha DNA DNA -18 3228 2745 1128 167 33 12 chr15 17386697 17386937 -83993584 + L1MA5 LINE L1 6056 6300 0 2309 168 44 36 chr15 17386937 17386953 -83993568 - Ricksha DNA DNA -501 2745 2731 2509 120 69 5 chr15 17388357 17388765 -83991756 - MER57B LTR ERV1 0 434 1 5419 56 0 9 chr15 17389072 17389765 -83990756 - L1PA7 LINE L1 -1 6153 5467 3208 86 8 1 chr15 17389765 17390299 -83990222 + L1PA7 LINE L1 4936 5471 -701 308 207 17 0 chr15 17390299 17390357 -83990164 - MER5A DNA MER1_type -118 71 13 225 361 45 69 chr15 17390625 17391002 -83989519 - L2 LINE L2 0 3313 2946 * 237 343 56 9 chr15 17390996 17391104 -83989417 - L2 LINE L2 -579 2735 2623 940 151 11 11 chr15 17391136 17391315 -83989206 - Looper DNA T2_type -1376 182 4 341 156 52 0 chr15 17391457 17391534 -83988987 + L1MB5 LINE L1 6028 6108 -66 1053 295 91 15 chr15 17391691 17392098 -83988423 + LTR16C LTR ERVL 37 474 -17 497 331 81 73 chr15 17392156 17392714 -83987807 - L2 LINE L2 -934 2380 1819 734 305 5 0 chr15 17392734 17392924 -83987597 + L2 LINE L2 2885 3075 -238 619 159 26 0 chr15 17392927 17393040 -83987481 + L1MA9 LINE L1 5993 6108 -204 1070 210 0 0 chr15 17393041 17393246 -83987275 + MER2 DNA MER2_type 1 205 -140 398 222 14 0 chr15 17393280 17393352 -83987169 + MER2 DNA MER2_type 270 342 -3 982 123 67 20 chr15 17393356 17393551 -83986970 + L1MA9 LINE L1 6109 6312 0 321 313 78 39 chr15 17393562 17393792 -83986729 + L2 LINE L2 3075 3313 0 30 0 0 0 chr15 17393793 17393823 -83986698 + AT_rich Low_complexity Low_complexity 1 30 0 202 73 49 0 chr15 17395155 17395196 -83985325 + (TA)n Simple_repeat Simple_repeat 2 44 0 1600 158 3 74 chr15 17396153 17396464 -83984057 - AluJb SINE Alu -20 292 4 254 342 13 0 chr15 17396685 17396764 -83983757 + MER5A DNA MER1_type 110 189 0 1137 268 37 12 chr15 17396991 17397526 -83982995 + L1M3c LINE L1 2155 2977 -4519 747 244 114 55 chr15 17397527 17398203 -83982318 + L1M3c LINE L1 2843 3558 -4007 1099 219 0 0 chr15 17398217 17398427 -83982094 + MER2 DNA MER2_type 1 210 -135 4924 244 48 26 chr15 17398534 17400276 -83980245 + L1M3c LINE L1 3566 5344 -2221 2174 130 0 0 chr15 17400277 17400584 -83979937 + AluSc SINE Alu 1 307 -2 8462 185 24 7 chr15 17400588 17402115 -83978406 + L1M1 LINE L1 10 1561 -6004 403 337 96 11 chr15 17402791 17402969 -83977552 + MIR3 SINE MIR 2 194 -14 3214 34 0 3 chr15 17405585 17405971 -83974550 + L1PA5 LINE L1 5763 6147 -7 33 0 0 0 chr15 17405974 17406007 -83974514 + AT_rich Low_complexity Low_complexity 1 33 0 1607 165 28 31 chr15 17406242 17406594 -83973927 - L1MA7 LINE L1 0 6291 5941 2533 184 13 4 chr15 17406595 17407058 -83973463 + L1MA7 LINE L1 5436 5902 -389 496 293 88 61 chr15 17407257 17407542 -83972979 - LTR67 LTR ERVL -4 553 250 2233 81 10 10 chr15 17407542 17407849 -83972672 - AluY SINE Alu -4 307 1 496 293 88 61 chr15 17407849 17408004 -83972517 - LTR67 LTR ERVL -307 250 101 405 0 0 0 chr15 17408097 17408142 -83972379 + (CA)n Simple_repeat Simple_repeat 2 46 0 1085 167 44 4 chr15 17409396 17409623 -83970898 + MER33 DNA MER1_type 1 236 -88 835 256 90 50 chr15 17409919 17410220 -83970301 + L2 LINE L2 2995 3307 -6 189 228 51 51 chr15 17410269 17410348 -83970173 - L2 LINE L2 -71 3242 3164 3604 43 11 0 chr15 17411978 17412417 -83968104 - L1PA4 LINE L1 -136 6019 5576 219 298 181 11 chr15 17413543 17413637 -83966884 - L2 LINE L2 -5 3308 3199 497 274 67 0 chr15 17416470 17416605 -83963916 + MLT1J1 LTR MaLR 28 171 -275 2163 122 7 3 chr15 17416769 17417073 -83963448 + AluSx SINE Alu 1 305 -7 520 295 32 26 chr15 17417994 17418184 -83962337 - MLT1I LTR MaLR -218 191 1 22 0 0 0 chr15 17418363 17418385 -83962136 + AT_rich Low_complexity Low_complexity 1 22 0 187 361 0 12 chr15 17418870 17418953 -83961568 - L2 LINE L2 -2 3311 3230 736 301 82 75 chr15 17418996 17419691 -83960830 - L2 LINE L2 -926 2388 1689 679 180 0 0 chr15 17420185 17420313 -83960208 - L1MA4 LINE L1 -10 6290 6163 561 287 54 49 chr15 17420320 17420632 -83959889 - L1MC4a LINE L1 -1879 5929 5613 2242 117 0 0 chr15 17420632 17420932 -83959589 - AluSx SINE Alu -12 300 1 561 287 54 49 chr15 17420932 17420988 -83959533 - L1MC4a LINE L1 -2195 5613 5559 897 97 28 0 chr15 17421699 17421844 -83958677 - L1MA6 LINE L1 0 6300 6152 2276 101 10 0 chr15 17421909 17422207 -83958314 - AluSg SINE Alu -9 301 1 288 53 0 0 chr15 17422926 17422964 -83957557 + (CA)n Simple_repeat Simple_repeat 1 38 0 206 215 0 114 chr15 17423374 17423453 -83957068 - MIR SINE MIR -97 165 96 255 339 170 27 chr15 17424395 17424725 -83955796 + L2 LINE L2 2463 2839 -475 565 321 27 0 chr15 17425416 17425600 -83954921 - MIR SINE MIR -6 256 68 204 211 0 0 chr15 17425737 17425775 -83954746 + (CA)n Simple_repeat Simple_repeat 1 38 0 11353 165 19 0 chr15 17425840 17427968 -83952553 + L1PA13 LINE L1 2006 4188 -2609 1439 126 82 0 chr15 17427943 17428198 -83952323 + L1PA13 LINE L1 4426 4701 -2096 * 723 150 136 7 chr15 17428208 17428348 -83952173 + Tigger1 DNA MER2_type 2259 2416 -2 368 310 32 39 chr15 17428763 17428918 -83951603 + MIR SINE MIR 1 154 -108 23 54 0 0 chr15 17429109 17429146 -83951375 + AT_rich Low_complexity Low_complexity 1 37 0 32 57 0 0 chr15 17429363 17429416 -83951105 + AT_rich Low_complexity Low_complexity 1 53 0 3069 166 11 23 chr15 17430034 17430391 -83950130 - Tigger3b DNA MER2_type -2463 565 216 2326 81 0 0 chr15 17430391 17430686 -83949835 - AluY SINE Alu -16 295 1 3069 166 11 23 chr15 17430686 17430900 -83949621 - Tigger3b DNA MER2_type -2812 216 1 919 242 83 91 chr15 17431998 17433301 -83947220 - HSREP522 Satellite telomeric 0 1291 1 213 65 0 0 chr15 17435116 17435147 -83945374 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 297 351 54 30 chr15 17435410 17435578 -83944943 + MIR SINE MIR 19 190 -72 377 257 68 24 chr15 17438997 17439203 -83941318 - LTR37B LTR ERV1 0 468 254 426 92 77 0 chr15 17439203 17439268 -83941253 + L1PA13 LINE L1 6088 6157 -6 235 211 0 18 chr15 17439316 17439373 -83941148 - LTR37B LTR ERV1 -221 247 192 4689 140 19 8 chr15 17439525 17440323 -83940198 - L1MA2 LINE L1 0 6304 5498 7540 164 24 3 chr15 17440449 17441885 -83938636 - L1MA2 LINE L1 -883 5263 3798 2154 132 3 23 chr15 17441885 17442271 -83938250 + L1MA2 LINE L1 5926 6304 0 2170 113 0 28 chr15 17442292 17442799 -83937722 + AluSq SINE Alu 1 313 0 419 167 11 0 chr15 17442817 17442907 -83937614 + GA-rich Low_complexity Low_complexity 2 92 0 7478 179 43 18 chr15 17442915 17444809 -83935712 + L1M2 LINE L1 3663 5620 -680 191 216 0 0 chr15 17444820 17444857 -83935664 + L2 LINE L2 3277 3313 0 822 322 77 53 chr15 17449351 17450083 -83930438 + ERVL LTR ERVL 3603 4351 -1413 2128 110 0 31 chr15 17451454 17451773 -83928748 - AluSg SINE Alu -1 309 1 1505 186 144 42 chr15 17452720 17453124 -83927397 + L1P LINE L1 3282 3726 -2420 2281 103 0 0 chr15 17453191 17453483 -83927038 + AluSc SINE Alu 1 292 -17 482 266 146 31 chr15 17459152 17459378 -83921143 - MIR SINE MIR 0 262 11 360 311 16 8 chr15 17459429 17459551 -83920970 + MIR SINE MIR 74 196 -66 309 265 183 27 chr15 17459634 17459809 -83920712 - MIR SINE MIR -40 222 30 189 0 0 0 chr15 17460558 17460579 -83919942 + (CAGAGA)n Simple_repeat Simple_repeat 4 24 0 3206 19 5 0 chr15 17460753 17461128 -83919393 - L1PA4 LINE L1 -3 6152 5776 4195 32 0 0 chr15 17461128 17461652 -83918869 + L1PA4 LINE L1 5275 5798 -357 363 257 41 76 chr15 17461977 17462148 -83918373 - MLT1J LTR MaLR -9 502 338 24 0 0 0 chr15 17462650 17462674 -83917847 + AT_rich Low_complexity Low_complexity 1 24 0 7083 25 6 0 chr15 17462732 17463951 -83916570 + L1PA3 LINE L1 4910 6135 -20 220 67 0 44 chr15 17463962 17464007 -83916514 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 238 271 99 55 chr15 17466489 17466666 -83913855 - MIR SINE MIR -67 195 16 317 225 79 22 chr15 17466835 17467013 -83913508 + L1ME4a LINE L1 5781 5968 -153 461 204 0 0 chr15 17467298 17467391 -83913130 + LTR55 LTR ERV 1 93 -455 671 252 33 0 chr15 17467418 17467632 -83912889 + LTR55 LTR ERV 235 455 -93 433 365 126 3 chr15 17468101 17468386 -83912135 - L3 LINE CR1 -159 1418 1099 2172 165 44 36 chr15 17469467 17469998 -83910523 - Ricksha DNA DNA -18 3228 2745 1104 167 33 12 chr15 17469998 17470238 -83910283 + L1MA5 LINE L1 6056 6300 0 2172 165 44 36 chr15 17470238 17470254 -83910267 - Ricksha DNA DNA -501 2745 2731 2481 123 69 5 chr15 17471665 17472073 -83908448 - MER57B LTR ERV1 0 434 1 5389 59 0 9 chr15 17472380 17473073 -83907448 - L1PA7 LINE L1 -1 6153 5467 3076 82 10 0 chr15 17473073 17473606 -83906915 + L1PA7 LINE L1 4936 5471 -701 326 190 17 0 chr15 17473606 17473664 -83906857 - MER5A DNA MER1_type -118 71 13 245 355 45 71 chr15 17473932 17474310 -83906211 - L2 LINE L2 0 3313 2946 237 343 56 9 chr15 17474304 17474412 -83906109 - L2 LINE L2 -579 2735 2623 * 886 151 11 11 chr15 17474444 17474623 -83905898 - Looper DNA T2_type -1376 182 4 320 156 52 0 chr15 17474765 17474842 -83905679 + L1MB5 LINE L1 6028 6108 -66 906 298 91 15 chr15 17475000 17475406 -83905115 + LTR16C LTR ERVL 38 474 -17 521 332 66 73 chr15 17475464 17476036 -83904485 - L2 LINE L2 -934 2380 1813 744 305 5 0 chr15 17476041 17476231 -83904290 + L2 LINE L2 2885 3075 -238 570 168 26 0 chr15 17476234 17476347 -83904174 + L1MA9 LINE L1 5993 6108 -204 971 219 0 0 chr15 17476348 17476553 -83903968 + MER2 DNA MER2_type 1 205 -140 374 222 14 0 chr15 17476587 17476659 -83903862 + MER2 DNA MER2_type 270 342 -3 949 118 67 20 chr15 17476663 17476858 -83903663 + L1MA7 LINE L1 6109 6312 0 288 317 78 39 chr15 17476869 17477099 -83903422 + L2 LINE L2 3075 3313 0 30 0 0 0 chr15 17477100 17477130 -83903391 + AT_rich Low_complexity Low_complexity 1 30 0 202 73 49 0 chr15 17478462 17478503 -83902018 + (TA)n Simple_repeat Simple_repeat 1 43 0 1628 159 3 73 chr15 17479460 17479774 -83900747 - AluJb SINE Alu -20 292 1 245 354 13 0 chr15 17479991 17480070 -83900451 + MER5A DNA MER1_type 110 189 0 1067 263 39 12 chr15 17480297 17480831 -83899690 + L1M3c LINE L1 2155 2977 -4519 586 246 114 55 chr15 17480832 17481508 -83899013 + L1M3c LINE L1 2843 3558 -4007 1057 214 0 0 chr15 17481522 17481732 -83898789 + MER2 DNA MER2_type 1 210 -135 4454 242 51 28 chr15 17481837 17483576 -83896945 + L1M3c LINE L1 3566 5344 -2221 2204 130 0 0 chr15 17483577 17483884 -83896637 + AluSc SINE Alu 1 307 -2 7916 185 24 7 chr15 17483888 17485415 -83895106 + L1M1 LINE L1 10 1561 -6004 403 337 96 11 chr15 17486091 17486269 -83894252 + MIR3 SINE MIR 2 194 -14 3206 36 0 3 chr15 17488884 17489270 -83891251 + L1PA5 LINE L1 5763 6147 -7 38 0 0 0 chr15 17489273 17489311 -83891210 + AT_rich Low_complexity Low_complexity 1 38 0 1610 164 25 31 chr15 17489546 17489899 -83890622 - L1MA7 LINE L1 0 6291 5941 2390 184 13 4 chr15 17489900 17490363 -83890158 + L1MA7 LINE L1 5436 5902 -389 357 293 88 61 chr15 17490562 17490847 -83889674 - LTR67 LTR ERVL -4 553 250 2257 82 10 10 chr15 17490847 17491153 -83889368 - AluY SINE Alu -5 306 1 357 293 88 61 chr15 17491153 17491308 -83889213 - LTR67 LTR ERVL -307 250 101 297 0 0 0 chr15 17491401 17491434 -83889087 + (CA)n Simple_repeat Simple_repeat 2 34 0 1020 167 44 4 chr15 17492690 17492917 -83887604 + MER33 DNA MER1_type 1 236 -88 831 256 90 50 chr15 17493213 17493514 -83887007 + L2 LINE L2 2995 3307 -6 184 228 51 51 chr15 17493563 17493642 -83886879 - L2 LINE L2 -71 3242 3164 3418 37 18 0 chr15 17495269 17495706 -83884815 - L1PA4 LINE L1 -135 6020 5576 218 304 196 0 chr15 17496832 17496924 -83883597 - L2 LINE L2 -5 3308 3199 194 290 87 0 chr15 17497900 17497969 -83882552 + MER5A DNA MER1_type 2 76 -113 2663 277 21 39 chr15 17497970 17499519 -83881002 + L1M3b LINE L1 3 1287 -4994 17996 33 9 0 chr15 17499520 17502484 -83878037 + L1PA3 LINE L1 3178 6155 0 470 293 54 0 chr15 17502485 17502652 -83877869 - MST-int LTR MaLR -314 1337 1162 272 291 12 23 chr15 17503789 17503875 -83876646 + GA-rich Low_complexity Low_complexity 6 90 0 1410 173 111 43 chr15 17504048 17504419 -83876102 - MSTD LTR MaLR 0 396 1 570 173 7 13 chr15 17504885 17505035 -83875486 + (TCCA)n Simple_repeat Simple_repeat 4 152 0 2319 102 0 0 chr15 17505206 17505510 -83875011 - AluSx SINE Alu -8 304 1 2270 102 16 0 chr15 17505987 17506290 -83874231 - AluY SINE Alu -3 308 1 247 319 132 0 chr15 17506475 17506566 -83873955 + L2 LINE L2 3168 3270 -2 23 0 0 0 chr15 17506606 17506629 -83873892 + AT_rich Low_complexity Low_complexity 1 23 0 2058 113 28 3 chr15 17506908 17507199 -83873322 - AluSx SINE Alu -14 298 1 2398 85 0 19 chr15 17507421 17507738 -83872783 - AluY SINE Alu 0 311 1 723 189 0 8 chr15 17507796 17507928 -83872593 - FLAM_C SINE Alu -2 131 1 264 214 36 12 chr15 17508463 17508547 -83871974 + (CAGAGA)n Simple_repeat Simple_repeat 5 90 0 2336 110 0 0 chr15 17509241 17509541 -83870980 + AluSx SINE Alu 1 300 -12 2094 109 7 14 chr15 17509838 17510122 -83870399 + AluJb SINE Alu 24 305 -7 1406 180 32 18 chr15 17510412 17510690 -83869831 + AluJo SINE Alu 1 282 -30 1055 39 0 0 chr15 17511026 17511154 -83869367 - L1PA4 LINE L1 -1 6154 6027 622 132 0 0 chr15 17511154 17511245 -83869276 + FLAM_C SINE Alu 33 123 -20 566 157 0 0 chr15 17511470 17511559 -83868962 + AluJ/FLAM SINE Alu 2 90 -222 1696 143 0 104 chr15 17513208 17513543 -83866978 - AluSx SINE Alu -11 301 2 21 36 0 0 chr15 17514448 17514476 -83866045 + AT_rich Low_complexity Low_complexity 1 28 0 404 253 10 10 chr15 17515562 17515661 -83864860 - MER94 DNA DNA -34 100 2 348 281 74 35 chr15 17518369 17518600 -83861921 + MIR SINE MIR 16 255 -7 23 33 0 0 chr15 17518876 17518906 -83861615 + AT_rich Low_complexity Low_complexity 1 30 0 1974 124 11 3 chr15 17519429 17519712 -83860809 - AluSq SINE Alu -20 293 9 2069 149 0 0 chr15 17522997 17523305 -83857216 - AluSx SINE Alu -4 308 1 2151 123 0 7 chr15 17523312 17523613 -83856908 - AluY SINE Alu -10 301 3 464 291 11 22 chr15 17523688 17523867 -83856654 + MIR SINE MIR 85 261 -1 1570 96 5 0 chr15 17523903 17524157 -83856364 - AluSg/x SINE Alu 0 335 81 2090 315 116 16 chr15 17524158 17525234 -83855287 - L1M4 LINE L1 -1281 4865 3682 * 5032 150 62 6 chr15 17525233 17526139 -83854382 - L1MA7 LINE L1 -1 6290 5334 3888 196 68 17 chr15 17526133 17527087 -83853434 + L1 LINE L1 4121 5123 -1023 * 461 273 80 45 chr15 17527087 17527647 -83852874 - L1M4 LINE L1 -2442 3704 3125 33 0 0 0 chr15 17527664 17527697 -83852824 + AT_rich Low_complexity Low_complexity 1 33 0 2653 11 0 0 chr15 17529065 17529347 -83851174 + AluY SINE Alu 1 282 -29 2208 102 0 49 chr15 17529781 17530105 -83850416 + AluSx SINE Alu 1 308 -4 332 257 203 51 chr15 17530106 17530421 -83850100 + L1MB7 LINE L1 5301 5663 -2145 240 35 0 0 chr15 17532146 17532175 -83848346 + (A)n Simple_repeat Simple_repeat 1 29 0 1474 226 58 0 chr15 17532815 17533143 -83847378 + MER7A DNA MER2_type 1 345 -1 195 42 0 0 chr15 17533213 17533237 -83847284 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 1562 236 63 5 chr15 17534241 17534668 -83845853 + L1MB7 LINE L1 5733 6184 0 21 0 0 0 chr15 17535074 17535095 -83845426 + AT_rich Low_complexity Low_complexity 1 21 0 1872 159 0 3 chr15 17535095 17535384 -83845137 - AluJo SINE Alu -24 288 1 275 236 114 24 chr15 17536021 17536144 -83844377 - MIR SINE MIR -57 205 72 243 297 11 22 chr15 17537252 17537343 -83843178 + (CA)n Simple_repeat Simple_repeat 1 90 0 24 0 0 0 chr15 17538665 17538689 -83841832 + GC_rich Low_complexity Low_complexity 1 24 0 299 224 7 48 chr15 17538689 17538879 -83841642 + G-rich Low_complexity Low_complexity 1 182 0 181 79 0 53 chr15 17539249 17539287 -83841234 + (CGG)n Simple_repeat Simple_repeat 2 37 0 406 236 57 0 chr15 17539743 17539866 -83840655 + MIR SINE MIR 25 154 -108 608 158 0 0 chr15 17540499 17540594 -83839927 + FLAM_A SINE Alu 16 110 -32 1866 163 10 0 chr15 17541014 17541303 -83839218 + AluJb SINE Alu 1 292 -20 303 187 99 22 chr15 17541427 17541518 -83839003 + MIR SINE MIR 50 147 -61 1079 205 157 40 chr15 17541693 17542068 -83838453 + MLT1C LTR MaLR 6 424 -43 305 303 20 79 chr15 17543858 17543945 -83836576 + MER5A DNA MER1_type 47 123 -66 1921 124 32 3 chr15 17543945 17544227 -83836294 - AluSx SINE Alu -22 290 1 305 303 20 79 chr15 17544227 17544291 -83836230 + MER5A DNA MER1_type 123 189 0 234 266 31 0 chr15 17544411 17544475 -83836046 - MIR SINE MIR -118 144 79 251 281 24 72 chr15 17544636 17544803 -83835718 - L1MC4 LINE L1 -1 8041 7883 356 93 59 42 chr15 17544950 17545068 -83835453 + (CA)n Simple_repeat Simple_repeat 1 120 0 462 142 40 28 chr15 17545131 17545307 -83835214 + (TG)n Simple_repeat Simple_repeat 1 178 0 385 133 66 18 chr15 17545362 17545528 -83834993 + (TG)n Simple_repeat Simple_repeat 2 175 0 180 259 19 0 chr15 17545968 17546022 -83834499 - MIR SINE MIR -124 84 30 302 220 128 0 chr15 17546201 17546310 -83834211 - MIR SINE MIR -80 182 60 2165 108 21 0 chr15 17546933 17547221 -83833300 - AluSx SINE Alu -18 294 1 1708 154 31 35 chr15 17547470 17547607 -83832914 - MLT1D LTR MaLR -9 496 360 2316 96 0 0 chr15 17547607 17547909 -83832612 - AluY SINE Alu -9 302 1 1708 154 31 35 chr15 17547909 17548089 -83832432 - MLT1D LTR MaLR -145 360 180 1649 122 4 4 chr15 17548093 17548330 -83832191 - AluJo SINE Alu 0 312 76 1019 98 7 14 chr15 17548331 17548474 -83832047 - THE1C LTR MaLR -233 142 1 4957 92 63 11 chr15 17548474 17549168 -83831353 - THE1C-int LTR MaLR 0 1580 851 821 122 0 0 chr15 17549168 17549283 -83831238 - AluSg/x SINE Alu -10 302 188 308 286 62 43 chr15 17549485 17549646 -83830875 - L1ME LINE L1 -4882 1660 1497 294 302 46 49 chr15 17549664 17549876 -83830645 - L1ME LINE L1 -5063 1571 1360 2291 99 10 0 chr15 17549876 17550178 -83830343 - AluSg SINE Alu -5 305 1 294 302 46 49 chr15 17550178 17550396 -83830125 - L1ME LINE L1 -5274 1360 1142 952 375 19 19 chr15 17551167 17551753 -83828768 + L1PA16 LINE L1 788 1373 -6201 332 296 10 10 chr15 17551894 17551992 -83828529 + L1PA16 LINE L1 2085 2182 -5399 11450 234 84 21 chr15 17552312 17556459 -83824062 + L1PA16 LINE L1 2271 6794 -810 1540 167 50 56 chr15 17556459 17556836 -83823685 - THE1C LTR MaLR 0 375 1 11450 234 84 21 chr15 17556836 17557697 -83822824 + L1PA16 LINE L1 6794 7599 -5 585 272 131 22 chr15 17558154 17558617 -83821904 - MLT1E1 LTR MaLR -1 653 5 277 267 58 97 chr15 17559207 17559589 -83820932 + HAL1 LINE L1 750 1116 -1391 421 264 138 54 chr15 17559650 17560040 -83820481 + HAL1b LINE L1 417 839 -509 308 306 37 96 chr15 17560209 17560480 -83820041 + HAL1b LINE L1 1051 1305 -43 1916 108 41 10 chr15 17560520 17560815 -83819706 - AluSx SINE Alu -8 304 1 745 144 17 0 chr15 17561938 17562056 -83818465 + FRAM SINE Alu 43 162 -14 219 296 120 28 chr15 17562058 17562166 -83818355 - MIR SINE MIR -55 207 90 38636 39 4 0 chr15 17562330 17567832 -83812689 + L1PA4 LINE L1 632 6152 -3 204 122 0 0 chr15 17568017 17568058 -83812463 + (T)n Simple_repeat Simple_repeat 1 41 0 4260 167 50 11 chr15 17568725 17569574 -83810947 + L1MC1 LINE L1 5452 6333 0 335 281 24 85 chr15 17570726 17570890 -83809631 + MIR3 SINE MIR 25 178 -30 336 340 21 14 chr15 17571081 17571225 -83809296 - MLT-int LTR MaLR -1209 526 382 344 187 42 69 chr15 17571426 17571561 -83808960 - MLT1H1 LTR MaLR -24 531 423 258 278 44 44 chr15 17571781 17571871 -83808650 - MLT1H LTR MaLR -346 203 114 1305 97 0 0 chr15 17572224 17572389 -83808132 - AluSc SINE Alu -13 296 132 2283 98 0 3 chr15 17572389 17572694 -83807827 - AluY SINE Alu -7 304 1 2680 13 16 0 chr15 17573796 17574111 -83806410 + L1PA2 LINE L1 5834 6153 -2 941 310 89 19 chr15 17574142 17574583 -83805938 + L1ME3A LINE L1 3281 3690 -2456 2571 135 14 36 chr15 17574583 17575027 -83805494 - Tigger2a DNA MER2_type 0 434 1 941 310 89 19 chr15 17575027 17575711 -83804810 + L1ME3A LINE L1 3690 4484 -1662 283 302 94 44 chr15 17575892 17576190 -83804331 + L1ME3A LINE L1 4901 5213 -933 * 287 295 53 54 chr15 17576185 17576459 -83804062 + L1P5 LINE L1 5270 5541 -615 3658 198 62 22 chr15 17576460 17577688 -83802833 + L1MB4 LINE L1 4903 6180 0 321 248 124 0 chr15 17577720 17577841 -83802680 + L1ME3A LINE L1 5561 5696 -474 451 290 83 5 chr15 17577861 17578078 -83802443 + L1ME3A LINE L1 5756 5989 -181 1677 184 31 0 chr15 17578766 17579054 -83801467 + AluJb SINE Alu 3 299 -13 3589 256 23 13 chr15 17579054 17580096 -83800425 - L1P LINE L1 -4028 2118 1067 3858 165 90 4 chr15 17580096 17580817 -83799704 + L1PA8 LINE L1 5390 6172 0 21 82 0 0 chr15 17580904 17580953 -83799568 + AT_rich Low_complexity Low_complexity 1 49 0 2025 138 0 10 chr15 17581117 17581408 -83799113 - AluSx SINE Alu -24 288 1 180 210 210 0 chr15 17581492 17581554 -83798967 + L3 LINE CR1 1355 1429 -148 244 331 61 14 chr15 17582695 17582843 -83797678 + MIR SINE MIR 51 205 -57 29 84 0 0 chr15 17583587 17583658 -83796863 + AT_rich Low_complexity Low_complexity 1 71 0 331 294 119 23 chr15 17585291 17585509 -83795012 + L1 LINE L1 2679 2917 -3229 2036 179 40 0 chr15 17585597 17585728 -83794793 + L1P LINE L1 4264 4388 -1758 333 0 0 0 chr15 17585728 17585765 -83794756 + (CA)n Simple_repeat Simple_repeat 1 37 0 2036 179 40 0 chr15 17585765 17586035 -83794486 + L1P LINE L1 4388 4681 -1465 * 5116 159 44 12 chr15 17586032 17586730 -83793791 + L1MA7 LINE L1 5064 5816 -475 225 0 0 0 chr15 17586730 17586755 -83793766 + (CA)n Simple_repeat Simple_repeat 2 26 0 5116 159 44 12 chr15 17586755 17587247 -83793274 + L1MA7 LINE L1 5816 6291 0 342 280 74 50 chr15 17587456 17588045 -83792476 + L1 LINE L1 4059 4665 -1481 1161 264 86 23 chr15 17588188 17589018 -83791503 + L1MDa LINE L1 2394 3283 -3257 1538 198 74 14 chr15 17589155 17589599 -83790922 + L1M4 LINE L1 4181 4651 -1495 193 195 0 0 chr15 17590219 17590260 -83790261 + MIR SINE MIR 172 212 -50 2794 163 0 25 chr15 17592103 17592613 -83787908 + LOR1a LTR ERV1 1 497 0 251 284 4 13 chr15 17592771 17592847 -83787674 - MIR SINE MIR -64 144 65 335 240 74 50 chr15 17593004 17593125 -83787396 - L2 LINE L2 -3 3310 3187 289 292 142 31 chr15 17593269 17593495 -83787026 - MIR SINE MIR 0 262 12 292 313 134 8 chr15 17593775 17593909 -83786612 - MIR SINE MIR -71 191 41 1574 214 70 62 chr15 17594071 17594135 -83786386 - MLT1D LTR MaLR 0 505 443 1846 101 79 8 chr15 17594135 17594402 -83786119 + AluSc SINE Alu 1 286 -23 1574 214 70 62 chr15 17594402 17594838 -83785683 - MLT1D LTR MaLR -62 443 1 238 279 63 13 chr15 17594852 17594931 -83785590 - L2 LINE L2 0 3313 3231 185 372 13 13 chr15 17594947 17595025 -83785496 - L2 LINE L2 -214 3058 2981 7175 44 5 0 chr15 17595277 17596428 -83784093 - L1PA3 LINE L1 -18 6137 4984 524 281 0 16 chr15 17598041 17598169 -83782352 + L2 LINE L2 3188 3313 0 229 85 0 43 chr15 17598752 17598799 -83781722 + (TC)n Simple_repeat Simple_repeat 2 46 0 207 0 0 0 chr15 17598799 17598822 -83781699 + (CA)n Simple_repeat Simple_repeat 1 23 0 270 193 59 30 chr15 17598836 17598971 -83781550 + (CA)n Simple_repeat Simple_repeat 1 139 0 378 0 0 0 chr15 17599007 17599049 -83781472 + (CA)n Simple_repeat Simple_repeat 1 42 0 2032 128 3 10 chr15 17599356 17599654 -83780867 + AluSx SINE Alu 5 300 -12 182 392 35 40 chr15 17599928 17600155 -83780366 - L2 LINE L2 -343 2971 2746 329 314 71 59 chr15 17600898 17601153 -83779368 + MIR SINE MIR 2 259 -3 1247 229 167 24 chr15 17601422 17601877 -83778644 + MLT2B1 LTR ERVL 1 520 0 2388 227 68 12 chr15 17602004 17602590 -83777931 - MER82 DNA MER2_type -1 652 34 6912 72 0 2 chr15 17603246 17604871 -83775650 - L1PA8 LINE L1 0 6172 4551 5959 58 1 4 chr15 17604871 17605644 -83774877 + L1P LINE L1 3651 4421 -1725 1027 288 45 49 chr15 17605723 17606192 -83774329 - HERV16 LTR ERVL -4336 660 194 339 254 61 26 chr15 17606231 17606345 -83774176 - HERV16 LTR ERVL -4794 202 85 1706 67 43 67 chr15 17606347 17606602 -83773919 - AluY SINE Alu -9 302 54 191 114 29 0 chr15 17606705 17606740 -83773781 + GA-rich Low_complexity Low_complexity 2 37 0 876 188 109 0 chr15 17608479 17608514 -83772007 + AluJb SINE Alu 88 118 -194 477 0 0 0 chr15 17608514 17608567 -83771954 + (CA)n Simple_repeat Simple_repeat 2 54 0 876 188 109 0 chr15 17608567 17608723 -83771798 + AluJb SINE Alu 118 300 -12 2286 93 0 3 chr15 17608723 17609034 -83771487 + AluSp SINE Alu 1 310 -3 262 238 131 0 chr15 17609620 17609704 -83770817 + L1MC5 LINE L1 7001 7095 -866 2138 105 0 3 chr15 17609749 17610045 -83770476 - AluSx SINE Alu -17 295 1 1386 185 57 4 chr15 17610047 17610328 -83770193 - AluJo SINE Alu -16 296 1 1871 126 3 30 chr15 17611347 17611649 -83768872 + AluSq SINE Alu 1 294 -19 1513 178 13 7 chr15 17611671 17611974 -83768547 + AluJb SINE Alu 6 310 -2 780 207 36 16 chr15 17612310 17612717 -83767804 + MLT1D LTR MaLR 5 458 -47 228 302 83 0 chr15 17612713 17612809 -83767712 + U13 snRNA snRNA 1 104 0 * 345 186 0 14 chr15 17612827 17612897 -83767624 + MLT1D LTR MaLR 430 498 -7 486 0 0 0 chr15 17614175 17614229 -83766292 + (CA)n Simple_repeat Simple_repeat 2 55 0 539 256 56 17 chr15 17616133 17616313 -83764208 + MER47A DNA MER2_type 1 187 -179 929 122 0 67 chr15 17616313 17616477 -83764044 + AluJo SINE Alu 1 153 -159 4411 224 57 46 chr15 17616580 17618006 -83762515 - L1MDa LINE L1 -2364 4176 2767 1995 110 28 7 chr15 17618006 17618297 -83762224 - AluSq SINE Alu -16 297 1 4411 224 57 46 chr15 17618297 17618730 -83761791 - L1MDa LINE L1 -3773 2767 2340 1617 161 83 9 chr15 17618730 17619066 -83761455 + MER46B DNA MER2_type 1 236 0 4411 224 57 46 chr15 17619066 17619875 -83760646 - L1MDa LINE L1 -4200 2340 1483 192 40 0 0 chr15 17619875 17619900 -83760621 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 390 134 0 0 chr15 17619922 17619989 -83760532 + (TCCCG)n Simple_repeat Simple_repeat 4 70 0 1729 149 4 0 chr15 17619991 17620266 -83760255 - AluSg SINE Alu -34 276 1 315 217 86 57 chr15 17621758 17621933 -83758588 - L1MC4a LINE L1 -1926 5882 5703 2245 94 0 3 chr15 17621935 17622244 -83758277 + AluSq SINE Alu 1 308 -5 936 61 0 0 chr15 17622613 17622727 -83757794 - AluY SINE Alu -197 114 1 530 295 70 44 chr15 17622730 17623184 -83757337 - L1MC5 LINE L1 -179 7782 7317 362 214 32 97 chr15 17623352 17623506 -83757015 - L1MC5 LINE L1 -861 7100 6957 514 231 35 35 chr15 17623560 17623763 -83756758 - L1M4 LINE L1 -3097 3049 2847 350 267 22 0 chr15 17623831 17623921 -83756600 - L1M4 LINE L1 -3327 2819 2728 1836 164 0 0 chr15 17626026 17626313 -83754208 + AluJb SINE Alu 1 287 -25 2167 96 7 0 chr15 17626322 17626614 -83753907 + AluSq SINE Alu 1 294 -19 244 367 61 0 chr15 17627050 17627148 -83753373 - L2 LINE L2 -1 3271 3168 2257 85 3 0 chr15 17630415 17630709 -83749812 - AluSc SINE Alu -14 295 1 2055 227 70 39 chr15 17631172 17631759 -83748762 - MER77 LTR ERV1 0 605 1 1032 254 53 22 chr15 17631913 17632236 -83748285 + MER58B DNA MER1_type 4 336 -5 22 0 0 0 chr15 17632406 17632428 -83748093 + AT_rich Low_complexity Low_complexity 1 22 0 3787 193 62 59 chr15 17634858 17635674 -83744847 - L1MB5 LINE L1 0 6174 5361 2262 103 0 0 chr15 17635674 17635985 -83744536 - AluSx SINE Alu -1 311 1 3787 193 62 59 chr15 17635985 17636878 -83743643 - L1MB5 LINE L1 -813 5361 4457 1519 206 69 43 chr15 17636883 17637024 -83743497 - L1MB5 LINE L1 -2486 3660 3524 2327 70 0 0 chr15 17637024 17637324 -83743197 - AluY SINE Alu -11 300 1 1519 206 69 43 chr15 17637324 17637567 -83742954 - L1MB5 LINE L1 -2622 3524 3256 2147 99 0 13 chr15 17637567 17637870 -83742651 - AluSc SINE Alu 0 309 11 1519 206 69 43 chr15 17637870 17638019 -83742502 - L1MB5 LINE L1 -2890 3256 3112 926 199 0 5 chr15 17638024 17638220 -83742301 - AluJb SINE Alu 0 312 118 1398 223 58 17 chr15 17638220 17638683 -83741838 - L1MB5 LINE L1 -3052 3094 2613 1514 151 0 44 chr15 17638816 17639087 -83741434 + AluJb SINE Alu 23 281 -31 213 139 0 0 chr15 17639102 17639145 -83741376 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 219 181 56 0 chr15 17639145 17639217 -83741304 + (TA)n Simple_repeat Simple_repeat 2 77 0 1907 266 47 46 chr15 17639223 17640192 -83740329 - HERVL68 LTR ERVL -1920 1117 60 2332 176 109 0 chr15 17640200 17640705 -83739816 - MER68 LTR ERV1 -2 560 1 314 257 121 36 chr15 17640707 17640847 -83739674 - L1ME LINE L1 -339 5782 5631 1508 172 80 43 chr15 17643886 17644298 -83736223 - MLT1C LTR MaLR 0 467 1 871 239 128 51 chr15 17644299 17644688 -83735833 - MLT1C LTR MaLR -46 421 3 343 315 6 0 chr15 17645515 17645680 -83734841 + (TG)n Simple_repeat Simple_repeat 1 166 0 790 142 0 0 chr15 17646157 17646277 -83734244 + FLAM_A SINE Alu 20 139 -3 2116 108 0 13 chr15 17647102 17647409 -83733112 + AluSg SINE Alu 1 303 -7 2140 86 7 13 chr15 17649047 17649351 -83731170 - AluSx SINE Alu -10 302 1 316 217 217 19 chr15 17649374 17649480 -83731041 - L1ME4a LINE L1 0 6121 5995 338 248 10 0 chr15 17651517 17651616 -83728905 + MER5A DNA MER1_type 10 98 -80 2282 87 0 0 chr15 17651850 17652150 -83728371 + AluY SINE Alu 3 302 -9 856 135 0 81 chr15 17652150 17652335 -83728186 + AluSg/x SINE Alu 132 301 -9 979 197 170 3 chr15 17652479 17652631 -83727890 + MER2 DNA MER2_type 2 127 -217 2433 77 0 0 chr15 17652631 17652942 -83727579 + AluY SINE Alu 1 311 0 979 197 170 3 chr15 17652942 17653083 -83727438 + MER2 DNA MER2_type 127 344 0 268 119 174 55 chr15 17653185 17653294 -83727227 + L1ME4a LINE L1 5999 6120 -1 935 178 40 0 chr15 17654338 17654512 -83726009 + MER58A DNA MER1_type 44 224 0 279 255 149 56 chr15 17655029 17655190 -83725331 - LTR16A LTR ERVL -93 357 182 528 157 88 0 chr15 17655271 17655373 -83725148 - MER20 DNA MER1_type -32 187 77 194 281 103 62 chr15 17655836 17655982 -83724539 + MIR SINE MIR 52 203 -59 204 163 23 0 chr15 17656006 17656049 -83724472 + (TA)n Simple_repeat Simple_repeat 1 44 0 198 358 70 30 chr15 17657046 17657187 -83723334 + MIR3 SINE MIR 14 158 -78 23 0 0 0 chr15 17657571 17657594 -83722927 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr15 17657807 17657828 -83722693 + AT_rich Low_complexity Low_complexity 1 21 0 245 300 43 0 chr15 17658198 17658268 -83722253 + L2 LINE L2 3198 3270 -2 53 30 0 0 chr15 17658805 17658872 -83721649 + AT_rich Low_complexity Low_complexity 1 67 0 1715 216 71 16 chr15 17659567 17659992 -83720529 - L1MB4 LINE L1 -2 6178 5731 1309 121 0 0 chr15 17659997 17660179 -83720342 - L1PA10 LINE L1 0 6168 5987 418 351 18 0 chr15 17660204 17660369 -83720152 + L2 LINE L2 1847 2014 -1300 6170 247 64 40 chr15 17661716 17663955 -83716566 - L1MD2 LINE L1 -18 6601 4234 2089 173 64 50 chr15 17663955 17664377 -83716144 - MSTA LTR MaLR 0 428 1 6170 247 64 40 chr15 17664377 17665989 -83714532 - L1MD2 LINE L1 -2385 4234 2661 440 123 27 0 chr15 17666335 17666408 -83714113 + MSTD LTR MaLR 322 396 0 550 251 18 54 chr15 17666408 17666575 -83713946 - L1MD2 LINE L1 -5861 548 388 1112 292 16 7 chr15 17666584 17666892 -83713629 - L1MD2 LINE L1 -6079 330 20 602 223 117 51 chr15 17669493 17669767 -83710754 + MLT1C LTR MaLR 3 294 -173 242 182 0 0 chr15 17669775 17669819 -83710702 + MLT1C LTR MaLR 445 488 -17 192 182 0 0 chr15 17670063 17670107 -83710414 + (TTCA)n Simple_repeat Simple_repeat 4 47 0 308 276 153 79 chr15 17671346 17671574 -83708947 + L1M2 LINE L1 816 1060 -5789 230 230 230 0 chr15 17671927 17672001 -83708520 - L2 LINE L2 -619 2695 2605 308 308 0 0 chr15 17672029 17672107 -83708414 - L2 LINE L2 0 3272 3195 837 52 0 63 chr15 17672399 17672590 -83707931 + (GCTG)n Simple_repeat Simple_repeat 2 180 0 839 56 0 66 chr15 17672621 17673000 -83707521 + (GCTG)n Simple_repeat Simple_repeat 2 533 0 576 71 0 82 chr15 17673035 17673219 -83707302 + (GCTG)n Simple_repeat Simple_repeat 2 170 0 303 292 96 90 chr15 17673220 17673363 -83707158 - L1M2 LINE L1 -5491 1358 1217 817 41 0 77 chr15 17673363 17673558 -83706963 + (GCTG)n Simple_repeat Simple_repeat 1 180 0 303 292 96 90 chr15 17673558 17673780 -83706741 - L1M2 LINE L1 -5632 1217 987 809 52 0 68 chr15 17673780 17673972 -83706549 + (GCTG)n Simple_repeat Simple_repeat 2 180 0 303 292 96 90 chr15 17673972 17674115 -83706406 - L1M2 LINE L1 -5862 987 846 * 312 246 88 107 chr15 17674088 17674442 -83706079 - L1M2 LINE L1 -5484 1365 1019 435 61 0 61 chr15 17674453 17674552 -83705969 + (GCTG)n Simple_repeat Simple_repeat 2 94 0 960 31 0 65 chr15 17674565 17674949 -83705572 + (GCTG)n Simple_repeat Simple_repeat 1 358 0 322 278 60 114 chr15 17674973 17675698 -83704823 - L1M2 LINE L1 -5497 1352 846 * 899 64 0 70 chr15 17675500 17675868 -83704653 + (GCTG)n Simple_repeat Simple_repeat 1 342 0 702 92 0 65 chr15 17675884 17676253 -83704268 + (GCTG)n Simple_repeat Simple_repeat 1 344 0 1225 121 23 0 chr15 17676253 17676426 -83704095 - AluSg/x SINE Alu -40 272 96 346 148 0 0 chr15 17676428 17676482 -83704039 + Alu SINE Alu 246 299 -3 367 276 4 15 chr15 17676494 17676760 -83703761 + (CA)n Simple_repeat Simple_repeat 1 262 0 327 25 0 0 chr15 17677963 17678003 -83702518 + (TTA)n Simple_repeat Simple_repeat 3 42 0 557 186 0 0 chr15 17678003 17678105 -83702416 - L1PA16 LINE L1 -25 6141 6040 2430 92 0 0 chr15 17678240 17678543 -83701978 + AluSx SINE Alu 1 303 -9 1365 183 2 10 chr15 17678648 17679086 -83701435 - L1PA16 LINE L1 -133 6033 5718 899 144 12 12 chr15 17679079 17679239 -83701282 - L1PA16 LINE L1 -245 5921 5762 * 1002 145 0 6 chr15 17679239 17679398 -83701123 - L1PA16 LINE L1 -247 5919 5762 925 152 6 6 chr15 17679399 17679557 -83700964 - L1PA16 LINE L1 -248 5918 5761 1531 161 15 68 chr15 17679558 17679790 -83700731 - L1PA16 LINE L1 -249 5917 5705 2069 113 7 0 chr15 17679790 17680072 -83700449 + AluSx SINE Alu 23 306 -6 1531 161 15 68 chr15 17680072 17680163 -83700358 - L1PA16 LINE L1 -461 5705 5611 1745 152 7 112 chr15 17680168 17680440 -83700081 - L1PA16 LINE L1 -22 6144 5930 3374 103 0 2 chr15 17680440 17680888 -83699633 + L1PA7 LINE L1 5708 6154 0 1745 152 7 112 chr15 17680888 17681035 -83699486 - L1PA16 LINE L1 -236 5930 5769 288 87 0 0 chr15 17681032 17681078 -83699443 + L1PA13 LINE L1 5989 6034 -129 * 2052 135 0 0 chr15 17681082 17681370 -83699151 + AluSx SINE Alu 1 288 -24 2000 95 23 56 chr15 17681865 17682005 -83698516 + AluSg SINE Alu 1 144 -166 2295 98 0 13 chr15 17682005 17682312 -83698209 + AluY SINE Alu 1 303 -8 2000 95 23 56 chr15 17682312 17682476 -83698045 + AluSg SINE Alu 144 295 -15 641 211 0 0 chr15 17682564 17682668 -83697853 + FLAM_C SINE Alu 2 105 -38 3141 264 33 6 chr15 17682669 17683488 -83697033 - ERVL LTR ERVL -3750 2014 1174 313 146 10 21 chr15 17683491 17683587 -83696934 + (CCAA)n Simple_repeat Simple_repeat 1 95 0 852 238 21 0 chr15 17683589 17683772 -83696749 - ERVL LTR ERVL -4575 1189 1002 222 37 0 0 chr15 17683772 17683799 -83696722 + (TG)n Simple_repeat Simple_repeat 2 28 0 4753 169 23 40 chr15 17683811 17684718 -83695803 - MER49 LTR ERV1 -2 921 30 337 182 0 0 chr15 17684818 17684884 -83695637 - MER72 LTR ERV1 -656 66 1 238 323 30 0 chr15 17684896 17684995 -83695526 - MLT2C1 LTR ERVL -59 338 237 334 244 25 59 chr15 17685012 17685131 -83695390 - MLT2C1 LTR ERVL -281 116 2 277 281 156 15 chr15 17685445 17685580 -83694941 - MIR SINE MIR -72 190 37 242 364 23 8 chr15 17686358 17686490 -83694031 + MIR SINE MIR 3 136 -126 440 227 100 0 chr15 17686847 17686957 -83693564 + MLT1D LTR MaLR 385 505 0 373 242 68 43 chr15 17688698 17688859 -83691662 + MIR3 SINE MIR 3 167 -41 2147 130 0 3 chr15 17689637 17689945 -83690576 + AluSq SINE Alu 1 307 -6 230 221 117 52 chr15 17690813 17690890 -83689631 - MER67D LTR ERV1 -303 211 130 * 904 257 15 20 chr15 17690870 17691196 -83689325 - MER34C LTR ERV1 -155 430 63 6674 34 4 0 chr15 17691934 17692672 -83687849 + L1PA5 LINE L1 5408 6148 -6 270 297 22 0 chr15 17693446 17693537 -83686984 - L2 LINE L2 -5 3308 3216 1849 161 10 26 chr15 17695564 17695875 -83684646 - AluSp SINE Alu -7 306 1 2072 140 0 0 chr15 17696247 17696540 -83683981 + AluSx SINE Alu 1 293 -19 208 314 0 0 chr15 17696710 17696780 -83683741 - MIR SINE MIR -8 254 185 3671 175 5 14 chr15 17697091 17697755 -83682766 - L1MA5 LINE L1 -1 6299 5642 1837 201 214 28 chr15 17697757 17698359 -83682162 + L1 LINE L1 3884 4597 -1549 28 29 0 0 chr15 17698997 17699032 -83681489 + AT_rich Low_complexity Low_complexity 1 35 0 200 158 105 0 chr15 17699085 17699161 -83681360 + (CATTT)n Simple_repeat Simple_repeat 5 88 0 561 123 81 6 chr15 17699182 17699497 -83681024 + (CATTT)n Simple_repeat Simple_repeat 1 338 0 43182 37 24 1 chr15 17699509 17705527 -83674994 - L1PA2 LINE L1 0 6155 3 561 106 66 31 chr15 17705539 17705770 -83674751 + (CATTT)n Simple_repeat Simple_repeat 1 239 0 878 110 36 17 chr15 17705774 17706060 -83674461 + (CATCT)n Simple_repeat Simple_repeat 1 291 0 768 101 65 8 chr15 17706084 17706477 -83674044 + (CATTT)n Simple_repeat Simple_repeat 1 415 0 198 121 103 0 chr15 17706489 17706547 -83673974 + (CATTT)n Simple_repeat Simple_repeat 5 68 0 560 135 47 29 chr15 17706585 17706755 -83673766 + (CATCT)n Simple_repeat Simple_repeat 5 177 0 * 649 78 56 56 chr15 17706728 17706908 -83673613 + (CATTT)n Simple_repeat Simple_repeat 1 180 0 638 112 87 0 chr15 17706915 17707076 -83673445 + (CATCT)n Simple_repeat Simple_repeat 5 179 0 578 97 91 12 chr15 17707075 17707240 -83673281 + (CATTT)n Simple_repeat Simple_repeat 1 178 0 * 283 136 68 0 chr15 17707244 17707303 -83673218 + (CATCT)n Simple_repeat Simple_repeat 5 67 0 531 97 103 7 chr15 17707303 17707458 -83673063 + (CATTT)n Simple_repeat Simple_repeat 5 174 0 844 98 61 0 chr15 17707474 17707637 -83672884 + (CATCT)n Simple_repeat Simple_repeat 5 177 0 553 113 94 12 chr15 17707658 17707818 -83672703 + (CATTT)n Simple_repeat Simple_repeat 2 174 0 600 97 73 24 chr15 17707829 17707994 -83672527 + (CATTT)n Simple_repeat Simple_repeat 5 177 0 218 87 43 72 chr15 17708040 17708109 -83672412 + (CATCT)n Simple_repeat Simple_repeat 1 67 0 36 33 0 16 chr15 17708233 17708257 -83672264 + AT_rich Low_complexity Low_complexity 1 24 -36 754 189 23 30 chr15 17708257 17708271 -83672250 - FLAM_C SINE Alu -171 131 118 1513 189 50 13 chr15 17708271 17708572 -83671949 - AluJo SINE Alu 0 312 1 198 0 0 0 chr15 17708572 17708594 -83671927 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 754 189 23 30 chr15 17708594 17708710 -83671811 - FLAM_C SINE Alu -182 120 1 36 33 0 16 chr15 17708710 17708746 -83671775 + AT_rich Low_complexity Low_complexity 24 60 0 330 280 46 29 chr15 17709136 17709367 -83671154 + (CTAGGG)n Simple_repeat Simple_repeat 1 234 0 261 141 0 78 chr15 17709284 17709475 -83671046 + (CAGGG)n Simple_repeat Simple_repeat 1 176 0 * 219 177 0 99 chr15 17709593 17709880 -83670641 + (CAGGG)n Simple_repeat Simple_repeat 1 258 0 340 171 0 55 chr15 17709907 17710071 -83670450 + (CAGGG)n Simple_repeat Simple_repeat 2 156 0 361 178 2 76 chr15 17710204 17710783 -83669738 + (CAGGG)n Simple_repeat Simple_repeat 1 535 0 205 141 0 90 chr15 17710790 17710868 -83669653 + (CCCTG)n Simple_repeat Simple_repeat 1 71 0 814 126 0 17 chr15 17710922 17711041 -83669480 - AluJb SINE Alu -179 133 17 365 223 32 11 chr15 17711043 17711137 -83669384 + MIR SINE MIR 92 187 -75 335 293 48 0 chr15 17711346 17711493 -83669028 + (CCCTAG)n Simple_repeat Simple_repeat 6 159 0 284 265 61 7 chr15 17711705 17711852 -83668669 + (CTAGGG)n Simple_repeat Simple_repeat 6 160 0 203 174 0 47 chr15 17711856 17711942 -83668579 + (CAGGG)n Simple_repeat Simple_repeat 5 86 0 444 275 47 0 chr15 17711953 17712124 -83668397 + (CTAGGG)n Simple_repeat Simple_repeat 2 180 0 296 293 51 9 chr15 17712137 17712439 -83668082 + (CTAGGG)n Simple_repeat Simple_repeat 1 314 0 431 250 34 23 chr15 17712501 17712677 -83667844 + (CTAGGG)n Simple_repeat Simple_repeat 1 178 0 244 152 0 79 chr15 17712678 17712842 -83667679 + (CAGGG)n Simple_repeat Simple_repeat 1 151 0 307 302 28 28 chr15 17712858 17713037 -83667484 + (CTAGGG)n Simple_repeat Simple_repeat 2 180 0 189 143 7 79 chr15 17713086 17713226 -83667295 + (CAGGG)n Simple_repeat Simple_repeat 2 131 0 473 259 46 9 chr15 17713329 17713667 -83666854 + (CTAGGG)n Simple_repeat Simple_repeat 1 350 0 203 130 0 22 chr15 17713685 17713731 -83666790 + (CAGGG)n Simple_repeat Simple_repeat 3 47 0 213 156 0 74 chr15 17713814 17713949 -83666572 + (CAGGG)n Simple_repeat Simple_repeat 1 125 0 415 260 48 0 chr15 17714005 17714151 -83666370 + (CTAGGG)n Simple_repeat Simple_repeat 2 154 0 359 286 48 0 chr15 17714270 17714438 -83666083 + (CTAGGG)n Simple_repeat Simple_repeat 2 177 0 209 238 16 76 chr15 17714389 17714574 -83665947 + (CAAGG)n Simple_repeat Simple_repeat 2 175 0 * 336 198 6 72 chr15 17714522 17714689 -83665832 + (CAGGG)n Simple_repeat Simple_repeat 1 156 0 236 183 0 59 chr15 17714768 17714937 -83665584 + (CAGGG)n Simple_repeat Simple_repeat 2 160 0 780 284 104 30 chr15 17715761 17716113 -83664408 - HSREP522 Satellite telomeric -171 377 1 3935 217 60 36 chr15 17716244 17717466 -83663055 + L1MB7 LINE L1 2785 4035 -2111 597 96 0 0 chr15 17717470 17717553 -83662968 + AluJb SINE Alu 208 290 -22 1026 152 0 24 chr15 17717584 17717748 -83662773 + AluJo SINE Alu 6 165 -147 2489 187 36 13 chr15 17717748 17718300 -83662221 + L1MB7 LINE L1 5599 6163 -21 22 35 0 0 chr15 17718486 17718515 -83662006 + AT_rich Low_complexity Low_complexity 1 29 0 618 197 0 47 chr15 17718515 17718642 -83661879 + FLAM_A SINE Alu 1 121 -12 2241 131 0 3 chr15 17718651 17718957 -83661564 + AluSx SINE Alu 1 305 -7 348 186 17 0 chr15 17718957 17719016 -83661505 - L1MC4 LINE L1 -1340 6702 6643 1643 162 45 17 chr15 17719163 17719453 -83661068 + AluSx SINE Alu 1 298 -14 2213 136 0 3 chr15 17719453 17719762 -83660759 + AluSx SINE Alu 1 308 -4 1424 181 33 49 chr15 17720014 17720318 -83660203 - AluJo SINE Alu -13 299 1 324 342 8 17 chr15 17720510 17720627 -83659894 - L2 LINE L2 0 3272 3157 186 118 0 0 chr15 17721184 17721218 -83659303 + (CA)n Simple_repeat Simple_repeat 2 35 0 2395 61 14 0 chr15 17722105 17722398 -83658123 - AluY SINE Alu -14 297 1 216 374 20 31 chr15 17722506 17722701 -83657820 + MIR SINE MIR 12 204 -58 2460 127 90 19 chr15 17722704 17723191 -83657330 - Tigger3(Golem) DNA MER2_type -3 3026 2505 2259 121 0 9 chr15 17723191 17723506 -83657015 + AluSq SINE Alu 2 313 0 505 321 24 6 chr15 17723865 17724033 -83656488 + MIR SINE MIR 13 183 -79 622 272 75 55 chr15 17724155 17724409 -83656112 + MER46C DNA MER2_type 80 338 0 2119 139 0 3 chr15 17724697 17724998 -83655523 + AluSx SINE Alu 1 300 -12 2001 163 0 0 chr15 17725682 17725977 -83654544 + AluSx SINE Alu 1 295 -17 189 0 0 0 chr15 17726023 17726044 -83654477 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1562 165 32 36 chr15 17727483 17727620 -83652901 + AluJo SINE Alu 1 137 -175 2227 130 3 0 chr15 17727620 17727921 -83652600 + AluSx SINE Alu 1 302 -10 1562 165 32 36 chr15 17727921 17728062 -83652459 + AluJo SINE Alu 137 278 -34 367 180 33 16 chr15 17728062 17728184 -83652337 + GA-rich Low_complexity Low_complexity 4 127 0 456 125 0 14 chr15 17728184 17728256 -83652265 + AluS SINE Alu 3 73 -239 2186 134 3 0 chr15 17728467 17728772 -83651749 + AluSq SINE Alu 1 306 -7 811 243 0 0 chr15 17728814 17728987 -83651534 + FRAM SINE Alu 1 167 -9 186 333 42 25 chr15 17729022 17729142 -83651379 - MIR SINE MIR -57 151 30 1793 169 55 19 chr15 17729986 17730348 -83650173 + THE1C LTR MaLR 1 375 0 1541 134 0 0 chr15 17730921 17731138 -83649383 + AluSg/x SINE Alu 87 303 -9 479 255 88 8 chr15 17732073 17732238 -83648283 - MIR SINE MIR -56 206 32 1858 142 4 4 chr15 17732630 17732904 -83647617 + AluJb SINE Alu 1 274 -38 399 255 172 14 chr15 17733456 17733601 -83646920 - MER5B DNA MER1_type -7 171 4 213 39 0 0 chr15 17733624 17733650 -83646871 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1605 142 3 20 chr15 17733659 17733954 -83646567 - TAR1 Satellite telomeric -297 1814 1525 377 321 129 47 chr15 17734337 17735003 -83645518 - L1MEd LINE L1 -5353 766 46 318 181 86 9 chr15 17735516 17735621 -83644900 + MIR3 SINE MIR 81 193 -15 1118 209 108 0 chr15 17736407 17736656 -83643865 + MER68 LTR ERV1 287 562 0 2805 251 74 48 chr15 17736658 17736789 -83643732 - L1 LINE L1 -1208 4938 4812 2238 92 0 74 chr15 17736789 17737115 -83643406 - AluY SINE Alu -9 302 1 2805 251 74 48 chr15 17737115 17737197 -83643324 - L1 LINE L1 -1334 4812 4734 2127 147 0 3 chr15 17737197 17737509 -83643012 - AluSq SINE Alu -2 311 1 2805 251 74 48 chr15 17737509 17737916 -83642605 - L1 LINE L1 -1412 4734 4339 1926 166 3 3 chr15 17737916 17738218 -83642303 + AluJb SINE Alu 1 302 -10 2805 251 74 48 chr15 17738218 17738760 -83641761 - L1 LINE L1 -1807 4339 3744 827 182 107 0 chr15 17738813 17738836 -83641685 - FRAM SINE Alu -139 173 154 255 31 0 0 chr15 17738836 17738868 -83641653 + (TA)n Simple_repeat Simple_repeat 2 33 0 186 103 0 0 chr15 17738867 17738896 -83641625 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 * 827 182 107 0 chr15 17738868 17739031 -83641490 - FRAM SINE Alu -158 154 1 27 49 0 0 chr15 17739046 17739087 -83641434 + AT_rich Low_complexity Low_complexity 1 41 0 2148 119 36 10 chr15 17739116 17739418 -83641103 - AluSx SINE Alu -2 310 1 2081 133 23 0 chr15 17740178 17740479 -83640042 + AluSx SINE Alu 1 308 -4 2050 130 0 14 chr15 17740966 17741258 -83639263 - AluSx SINE Alu -12 300 13 983 161 0 25 chr15 17741358 17741519 -83639002 + FRAM SINE Alu 3 159 -17 2596 74 0 0 chr15 17741522 17741833 -83638688 + AluY SINE Alu 1 311 0 2572 53 0 3 chr15 17742232 17742532 -83637989 + AluY SINE Alu 1 299 -12 2088 93 21 11 chr15 17742756 17743073 -83637448 - AluSq SINE Alu 0 320 1 1798 137 0 0 chr15 17743206 17743461 -83637060 - AluSq SINE Alu -1 312 58 1031 162 7 0 chr15 17743865 17744019 -83636502 + AluJo SINE Alu 84 238 -74 1805 159 50 0 chr15 17744052 17744329 -83636192 + AluJb SINE Alu 1 291 -21 234 0 0 0 chr15 17744606 17744632 -83635889 + (T)n Simple_repeat Simple_repeat 1 26 0 1726 121 9 0 chr15 17744801 17745032 -83635489 - AluSg/x SINE Alu -12 300 68 1949 123 0 0 chr15 17745302 17745563 -83634958 + AluSq SINE Alu 1 261 -52 28 71 0 0 chr15 17745564 17745620 -83634901 + AT_rich Low_complexity Low_complexity 1 56 0 27 49 0 0 chr15 17745676 17745717 -83634804 + AT_rich Low_complexity Low_complexity 1 41 0 520 112 0 82 chr15 17745733 17745831 -83634690 - L1MB3 LINE L1 -41 6142 6053 1849 178 0 7 chr15 17745847 17746145 -83634376 + AluJo SINE Alu 1 296 -16 624 176 8 16 chr15 17746170 17746295 -83634226 - FLAM_A SINE Alu -9 124 1 2055 194 18 41 chr15 17746296 17746785 -83633736 - L1MB3 LINE L1 -118 6065 5588 1898 148 65 0 chr15 17746812 17747102 -83633419 - AluSx SINE Alu -3 309 1 364 214 8 87 chr15 17748178 17748275 -83632246 - MER96B DNA MER1_type? -34 383 297 2221 124 10 0 chr15 17748275 17748582 -83631939 + AluSx SINE Alu 1 310 -2 364 214 8 87 chr15 17748582 17748610 -83631911 - MER96B DNA MER1_type? -120 297 268 282 29 0 0 chr15 17748611 17748646 -83631875 + (TTTAA)n Simple_repeat Simple_repeat 3 37 0 1502 157 19 38 chr15 17748655 17748916 -83631605 - AluJo SINE Alu -56 256 1 804 296 39 0 chr15 17748959 17749189 -83631332 + MIR SINE MIR 13 251 -11 203 322 34 62 chr15 17749211 17749357 -83631164 - L2 LINE L2 -114 3158 3017 2333 96 0 0 chr15 17749672 17749963 -83630558 + AluSg SINE Alu 3 293 -17 1850 152 4 11 chr15 17750013 17750290 -83630231 + AluJo SINE Alu 1 275 -37 286 106 43 0 chr15 17750291 17750338 -83630183 + Alu SINE Alu 247 295 -7 384 205 68 8 chr15 17751059 17751176 -83629345 + L2 LINE L2 2360 2483 -831 671 155 0 14 chr15 17751184 17751326 -83629195 + C-rich Low_complexity Low_complexity 1 140 0 710 120 4 58 chr15 17751444 17751711 -83628810 + (TCCCC)n Simple_repeat Simple_repeat 1 252 0 186 250 0 0 chr15 17751735 17751791 -83628730 + CT-rich Low_complexity Low_complexity 1 56 0 1681 178 16 16 chr15 17751823 17752132 -83628389 - AluJo SINE Alu -3 309 1 721 151 0 0 chr15 17752147 17752266 -83628255 - FLAM_C SINE Alu -19 124 6 305 236 146 0 chr15 17752270 17752380 -83628141 + L2 LINE L2 2468 2593 -721 480 214 43 0 chr15 17752406 17752523 -83627998 - MIR SINE MIR -65 197 76 617 253 205 44 chr15 17752555 17752836 -83627685 + L2 LINE L2 2709 2944 -369 2284 108 10 0 chr15 17752836 17753133 -83627388 + AluSx SINE Alu 1 300 -12 617 253 205 44 chr15 17753133 17753373 -83627148 + L2 LINE L2 2944 3308 -5 1499 224 0 10 chr15 17753424 17753737 -83626784 + AluJo SINE Alu 1 310 -2 2355 166 110 25 chr15 17753757 17754276 -83626245 - LTR6A LTR ERV1 0 564 2 1310 113 62 5 chr15 17754748 17754943 -83625578 - AluSg/x SINE Alu -15 295 90 2260 96 0 10 chr15 17755377 17755689 -83624832 - AluSg SINE Alu 0 310 1 2577 68 7 0 chr15 17756029 17756338 -83624183 - AluY SINE Alu 0 311 1 2267 119 3 3 chr15 17756386 17756698 -83623823 - AluSx SINE Alu 0 312 1 1818 146 26 42 chr15 17757658 17757966 -83622555 + AluSx SINE Alu 1 303 -9 1166 128 0 0 chr15 17758390 17758546 -83621975 + FRAM SINE Alu 11 166 -10 337 113 0 0 chr15 17759048 17759101 -83621420 - MADE1 DNA Mariner 0 80 28 2027 133 0 23 chr15 17759101 17759402 -83621119 + AluSx SINE Alu 1 294 -18 1096 136 28 11 chr15 17759402 17759578 -83620943 + AluSq SINE Alu 134 312 -1 1674 167 3 37 chr15 17760103 17760290 -83620231 - AluJb SINE Alu 0 312 139 2272 90 3 0 chr15 17760290 17760591 -83619930 - AluSp SINE Alu -11 302 1 1674 167 3 37 chr15 17760591 17760726 -83619795 - AluJb SINE Alu -173 139 1 2049 97 47 3 chr15 17760827 17761127 -83619394 - AluSq SINE Alu 0 313 1 687 171 0 17 chr15 17761423 17761540 -83618981 + FLAM_C SINE Alu 3 117 -16 1864 122 0 78 chr15 17761549 17761740 -83618781 - AluSx SINE Alu -10 302 144 2018 109 3 0 chr15 17761740 17762024 -83618497 - AluSg1 SINE Alu -24 285 1 1864 122 0 78 chr15 17762024 17762153 -83618368 - AluSx SINE Alu -168 144 7 756 158 0 43 chr15 17762178 17762317 -83618204 - FLAM_C SINE Alu 0 133 1 2069 117 17 0 chr15 17762499 17762789 -83617732 - AluSq SINE Alu -18 295 1 2091 128 0 0 chr15 17763177 17763489 -83617032 - AluSx SINE Alu 0 312 1 836 191 25 0 chr15 17763516 17763678 -83616843 + AluJb SINE Alu 137 302 -10 530 243 91 100 chr15 17763711 17763812 -83616709 - L1M4 LINE L1 -1665 5502 5402 1869 154 0 13 chr15 17763812 17764124 -83616397 - AluSx SINE Alu -4 308 1 530 243 91 100 chr15 17764124 17764351 -83616170 - L1M4 LINE L1 -1765 5402 5177 1152 165 5 9 chr15 17764516 17764728 -83615793 + AluJb SINE Alu 92 302 -10 513 177 0 0 chr15 17764913 17764992 -83615529 - AluJ/FLAM SINE Alu -221 91 13 1945 155 0 0 chr15 17765084 17765381 -83615140 + AluSq SINE Alu 5 301 -12 1155 145 199 12 chr15 17765387 17765628 -83614893 + AluSg1 SINE Alu 1 286 -23 993 80 0 15 chr15 17766034 17766171 -83614350 + AluSq/x SINE Alu 1 135 -178 2013 140 0 0 chr15 17766171 17766471 -83614050 + AluSx SINE Alu 1 300 -12 196 293 17 0 chr15 17766497 17766555 -83613966 - MIR3 SINE MIR -135 73 15 713 205 8 0 chr15 17767301 17767423 -83613098 - FLAM_A SINE Alu -10 123 1 307 73 24 0 chr15 17767482 17767523 -83612998 - 5S rRNA rRNA -79 42 1 1680 177 0 10 chr15 17767569 17767868 -83612653 + AluJb SINE Alu 3 298 -14 2093 118 0 3 chr15 17767868 17768164 -83612357 + AluSg SINE Alu 1 295 -15 2053 102 40 7 chr15 17768468 17768771 -83611750 + AluSq SINE Alu 1 313 0 1670 169 3 13 chr15 17768785 17769093 -83611428 + AluJo SINE Alu 1 305 -7 492 262 16 27 chr15 17769205 17769293 -83611228 - L1M4 LINE L1 -2383 4784 4697 396 0 0 0 chr15 17769293 17769337 -83611184 + (TG)n Simple_repeat Simple_repeat 2 45 0 492 262 16 27 chr15 17769337 17769431 -83611090 - L1M4 LINE L1 -2470 4697 4604 2231 218 15 17 chr15 17769473 17769941 -83610580 - L1M4 LINE L1 -5941 1227 761 1169 206 86 86 chr15 17770003 17770435 -83610086 + MSTB1 LTR MaLR 1 432 0 1347 221 246 10 chr15 17770444 17770927 -83609594 - L1M4 LINE L1 -6571 597 1 649 269 187 26 chr15 17771050 17771440 -83609081 - L1ME3A LINE L1 -1 6169 5717 314 198 0 74 chr15 17771610 17771691 -83608830 - L1ME3A LINE L1 -2241 5544 5470 379 303 61 6 chr15 17771712 17771877 -83608644 - L1MEd LINE L1 -5943 176 3 1351 95 37 0 chr15 17772194 17772384 -83608137 + AluY SINE Alu 106 302 -9 2175 103 3 0 chr15 17772592 17772882 -83607639 + AluSx SINE Alu 1 291 -21 1155 193 82 4 chr15 17773098 17773368 -83607153 - L1ME3A LINE L1 -769 5377 5087 309 266 16 57 chr15 17773819 17773943 -83606578 + Charlie1 DNA MER1_type 1 119 -2642 432 195 57 24 chr15 17774053 17774176 -83606345 + Charlie1 DNA MER1_type 2523 2649 -112 275 294 84 0 chr15 17774206 17774325 -83606196 - L1MA9 LINE L1 -5 6307 6179 979 161 134 28 chr15 17774886 17775140 -83605381 + AluJo SINE Alu 1 281 -31 857 199 61 30 chr15 17775151 17775259 -83605262 - Charlie5 DNA MER1_type -119 2505 2402 2179 105 0 7 chr15 17775259 17775565 -83604956 - AluSq SINE Alu -9 304 1 857 199 61 30 chr15 17775565 17775687 -83604834 - Charlie5 DNA MER1_type -222 2402 2268 477 164 103 0 chr15 17775706 17775822 -83604699 - MER3 DNA MER1_type -41 168 41 232 278 142 57 chr15 17775825 17776294 -83604227 - L2 LINE L2 -208 3064 2554 193 312 18 46 chr15 17776365 17776474 -83604047 - L2 LINE L2 -987 2327 2222 735 107 116 16 chr15 17776554 17776675 -83603846 - FLAM_C SINE Alu 0 133 1 499 280 63 7 chr15 17776935 17777078 -83603443 + MIR SINE MIR 42 192 -70 4958 128 85 15 chr15 17777082 17777141 -83603380 - Tigger2 DNA MER2_type 0 2718 2665 2120 106 14 0 chr15 17777141 17777433 -83603088 + AluSg SINE Alu 1 296 -14 4958 128 85 15 chr15 17777433 17778219 -83602302 - Tigger2 DNA MER2_type -53 2665 1814 1587 185 58 48 chr15 17778196 17778552 -83601969 + MER49 LTR ERV1 515 866 -57 * 1879 148 0 16 chr15 17778552 17778857 -83601664 + AluSx SINE Alu 6 305 -7 1478 162 8 15 chr15 17778867 17779126 -83601395 + AluJo SINE Alu 1 257 -55 1587 185 58 48 chr15 17779126 17779153 -83601368 + MER49 LTR ERV1 874 913 -10 672 125 0 0 chr15 17779179 17779283 -83601238 - Tigger2 DNA MER2_type -1742 976 873 786 204 40 28 chr15 17779298 17779474 -83601047 - AluJb SINE Alu -1 311 134 4316 126 64 29 chr15 17779474 17780239 -83600282 - Tigger2 DNA MER2_type -1833 885 94 505 175 0 0 chr15 17780252 17780332 -83600189 - AluJ/FLAM SINE Alu -229 83 4 445 158 13 0 chr15 17780335 17780411 -83600110 - Tigger2 DNA MER2_type -1831 887 811 721 161 0 9 chr15 17780465 17780577 -83599944 + FLAM_C SINE Alu 3 113 -30 1972 125 0 29 chr15 17780582 17780893 -83599628 - AluSc SINE Alu -7 302 1 363 181 0 42 chr15 17780935 17781007 -83599514 - Tigger2 DNA MER2_type -2649 69 1 957 236 71 13 chr15 17781148 17781968 -83598553 - L1ME1 LINE L1 -142 6024 5032 2983 167 70 2 chr15 17781997 17782541 -83597980 - ERVL LTR ERVL -357 5407 4827 803 142 0 0 chr15 17782541 17782654 -83597867 - AluSq/x SINE Alu -199 114 2 8338 247 61 32 chr15 17782677 17785102 -83595419 - L1MC/D LINE L1 -743 5797 3445 1658 153 28 17 chr15 17785102 17785390 -83595131 - AluJb SINE Alu -21 291 1 8338 247 61 32 chr15 17785390 17786052 -83594469 - L1MC/D LINE L1 -3095 3445 2687 2778 13 0 0 chr15 17786052 17786363 -83594158 - AluY SINE Alu 0 311 1 8338 247 61 32 chr15 17786363 17786485 -83594036 - L1MC/D LINE L1 -3853 2687 2570 1026 256 120 50 chr15 17786560 17787075 -83593446 - MER77 LTR ERV1 -1 604 54 3114 245 94 17 chr15 17787106 17788342 -83592179 - L1MDb LINE L1 -4012 2528 1106 1491 180 3 49 chr15 17788342 17788669 -83591852 - AluJo SINE Alu 0 312 1 3114 245 94 17 chr15 17788669 17788946 -83591575 - L1MDb LINE L1 -5434 1106 852 731 276 62 23 chr15 17789117 17789374 -83591147 - L1MDb LINE L1 -6212 328 62 476 317 100 42 chr15 17790521 17790830 -83589691 + HAL1 LINE L1 1246 1572 -935 873 127 8 0 chr15 17791165 17791299 -83589222 + AluSq/x SINE Alu 1 135 -177 2035 118 0 0 chr15 17791299 17791595 -83588926 + AluSx SINE Alu 1 296 -16 700 184 45 11 chr15 17791739 17791924 -83588597 - L1M3 LINE L1 -661 5510 5288 182 216 0 0 chr15 17792003 17792040 -83588481 + L2 LINE L2 3261 3297 -16 749 260 27 14 chr15 17794152 17794379 -83586142 + LTR33 LTR ERVL 35 252 -271 348 288 15 15 chr15 17794431 17794563 -83585958 + LTR33 LTR ERVL 382 513 -8 259 247 55 0 chr15 17795106 17795179 -83585342 - MIR3 SINE MIR -5 203 127 1986 150 3 35 chr15 17796235 17796423 -83584098 + L1M3 LINE L1 5442 5616 -555 2380 108 93 18 chr15 17796423 17796821 -83583700 + MSTA LTR MaLR 1 428 0 1986 150 3 35 chr15 17796821 17796978 -83583543 + L1M3 LINE L1 5616 5776 -395 371 286 86 36 chr15 17798364 17798504 -83582017 + L2 LINE L2 3166 3312 -1 243 359 60 0 chr15 17798511 17798628 -83581893 + MIR SINE MIR 34 157 -105 258 32 0 0 chr15 17798665 17798696 -83581825 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 261 98 0 0 chr15 17798695 17798736 -83581785 + (TA)n Simple_repeat Simple_repeat 2 42 0 183 352 93 19 chr15 17798751 17798859 -83581662 + L2 LINE L2 3095 3210 -62 15093 80 10 1 chr15 17800960 17803745 -83576776 - L1PA7 LINE L1 -4 6150 3338 15726 116 13 22 chr15 17803853 17806323 -83574198 - L1PA7 LINE L1 -3076 3070 625 841 271 127 16 chr15 17806868 17807288 -83573233 + L2 LINE L2 2530 3052 -261 224 167 0 0 chr15 17807391 17807433 -83573088 + L2 LINE L2 3231 3272 0 25 0 0 0 chr15 17807707 17807732 -83572789 + AT_rich Low_complexity Low_complexity 1 25 0 1687 243 92 27 chr15 17807827 17808308 -83572213 + LTR33 LTR ERVL 4 515 -6 2152 105 7 0 chr15 17808314 17808610 -83571911 - AluSg SINE Alu -12 298 1 8048 60 6 91 chr15 17809224 17810485 -83570036 - SVA Other Other -7 1379 226 290 302 78 8 chr15 17810790 17810919 -83569602 + MIR SINE MIR 51 188 -74 1916 178 79 5 chr15 17810929 17811323 -83569198 + L1MC2 LINE L1 5917 6339 -5 30 45 0 0 chr15 17811345 17811389 -83569132 + AT_rich Low_complexity Low_complexity 1 44 0 475 294 20 7 chr15 17812342 17812495 -83568026 - MER103 DNA DNA 0 166 12 2317 112 3 0 chr15 17812579 17812882 -83567639 + AluSx SINE Alu 1 304 -8 28 0 0 0 chr15 17813013 17813041 -83567480 + AT_rich Low_complexity Low_complexity 1 28 0 375 0 0 0 chr15 17813319 17813362 -83567159 - MADE1 DNA Mariner 0 80 38 333 23 23 0 chr15 17814166 17814209 -83566312 + MADE1 DNA Mariner 37 80 0 380 313 37 82 chr15 17814302 17814494 -83566027 + MIR SINE MIR 6 184 -78 1590 167 36 4 chr15 17814494 17814617 -83565904 + AluJb SINE Alu 1 119 -193 360 0 0 0 chr15 17814617 17814657 -83565864 + (CA)n Simple_repeat Simple_repeat 2 41 0 1590 167 36 4 chr15 17814657 17814809 -83565712 + AluJb SINE Alu 119 285 -27 380 313 37 82 chr15 17814809 17814884 -83565637 + MIR SINE MIR 184 261 -1 200 307 157 30 chr15 17817380 17817839 -83562682 + L2 LINE L2 2118 2634 -680 863 186 56 0 chr15 17818088 17818249 -83562272 - FAM SINE Alu -5 170 1 347 319 50 0 chr15 17818251 17818370 -83562151 + L2 LINE L2 3125 3249 -23 219 36 0 0 chr15 17818903 17818931 -83561590 + (A)n Simple_repeat Simple_repeat 1 28 0 1848 176 38 61 chr15 17818992 17819469 -83561052 - MLT1C LTR MaLR -1 466 1 811 189 34 34 chr15 17820132 17820307 -83560214 + FAM SINE Alu 1 175 0 22 35 0 0 chr15 17820307 17820336 -83560185 + AT_rich Low_complexity Low_complexity 1 29 0 1744 172 40 3 chr15 17820378 17820675 -83559846 + AluJo SINE Alu 1 308 -4 541 194 191 53 chr15 17820798 17820998 -83559523 - L1ME4a LINE L1 -4 6117 5946 1834 141 27 13 chr15 17820998 17821296 -83559225 - AluJb SINE Alu -10 302 1 541 194 191 53 chr15 17821296 17821450 -83559071 - L1ME4a LINE L1 -175 5946 5714 361 203 0 0 chr15 17821700 17821769 -83558752 + AluJ/FLAM SINE Alu 1 69 -233 231 186 0 0 chr15 17821807 17821850 -83558671 + G-rich Low_complexity Low_complexity 5 47 0 834 175 111 11 chr15 17821853 17822042 -83558479 + MER50 LTR ERV1 33 240 -494 * 1855 126 11 7 chr15 17822025 17822303 -83558218 + MER50 LTR ERV1 433 711 -23 292 254 0 0 chr15 17822307 17822362 -83558159 + FLAM SINE Alu 71 125 -8 186 328 107 8 chr15 17822619 17822750 -83557771 + MIR SINE MIR 3 146 -116 188 287 210 19 chr15 17822782 17822939 -83557582 - MIR SINE MIR -54 208 22 928 193 49 34 chr15 17823087 17823352 -83557169 - MER96B DNA MER1_type? 0 417 149 2296 72 31 7 chr15 17823383 17823676 -83556845 + AluY SINE Alu 1 300 -11 21 0 0 0 chr15 17823795 17823816 -83556705 + AT_rich Low_complexity Low_complexity 1 21 0 2119 88 56 7 chr15 17823871 17824155 -83556366 - AluSq SINE Alu -15 298 1 2188 120 7 0 chr15 17825353 17825661 -83554860 + AluSg SINE Alu 1 310 0 2294 104 0 0 chr15 17825721 17826019 -83554502 + AluSc SINE Alu 1 298 -11 662 137 24 0 chr15 17826068 17826192 -83554329 + L1MB3 LINE L1 6041 6167 -16 21 36 0 0 chr15 17826236 17826264 -83554257 + AT_rich Low_complexity Low_complexity 1 28 0 2144 118 10 7 chr15 17826429 17826726 -83553795 - AluSx SINE Alu -14 298 1 1407 202 65 110 chr15 17826739 17827250 -83553271 + MER20B DNA MER1_type 64 551 -232 21 0 0 0 chr15 17827250 17827271 -83553250 + AT_rich Low_complexity Low_complexity 1 21 0 2396 88 0 0 chr15 17828116 17828410 -83552111 + AluSg1 SINE Alu 2 295 -14 466 248 61 43 chr15 17828524 17828688 -83551833 + L1ME4a LINE L1 5696 5876 -245 1963 159 10 0 chr15 17828688 17828990 -83551531 + AluJb SINE Alu 2 306 -6 466 248 61 43 chr15 17828990 17829117 -83551404 + L1ME4a LINE L1 5876 5999 -122 268 338 81 5 chr15 17829560 17829917 -83550604 + L2 LINE L2 2593 2981 -291 2866 69 11 16 chr15 17829919 17830296 -83550225 + THE1C LTR MaLR 1 375 0 359 326 62 17 chr15 17830443 17830621 -83549900 + MIR SINE MIR 25 210 -52 238 274 20 78 chr15 17830749 17830851 -83549670 + L2 LINE L2 2992 3087 -185 312 299 47 19 chr15 17831082 17831189 -83549332 + L2 LINE L2 3163 3272 0 487 287 91 35 chr15 17831800 17832237 -83548284 + LTR33 LTR ERVL 23 521 0 655 221 23 0 chr15 17832265 17832396 -83548125 + MER94 DNA DNA 1 134 0 2047 134 7 0 chr15 17834831 17835122 -83545399 + AluSx SINE Alu 1 293 -19 731 161 0 0 chr15 17835197 17835315 -83545206 - FLAM_A SINE Alu -15 127 10 468 86 0 0 chr15 17835342 17835412 -83545109 - Alu SINE Alu 0 312 243 1386 82 66 6 chr15 17835524 17835706 -83544815 - AluY SINE Alu -118 193 1 928 156 0 19 chr15 17835841 17835995 -83544526 + AluJb SINE Alu 140 290 -22 225 154 77 0 chr15 17836003 17836068 -83544453 + GA-rich Low_complexity Low_complexity 1 70 0 466 60 0 0 chr15 17836248 17836315 -83544206 - Alu SINE Alu 0 310 244 754 147 16 0 chr15 17836315 17836444 -83544077 - L1MB3 LINE L1 -41 6142 6012 2035 141 3 0 chr15 17836679 17836993 -83543528 + AluSx SINE Alu 1 315 0 316 296 44 0 chr15 17837533 17837649 -83542872 - MIR SINE MIR -53 155 34 38 39 0 0 chr15 17837820 17837872 -83542649 + AT_rich Low_complexity Low_complexity 1 52 0 2092 141 0 3 chr15 17837878 17838177 -83542344 + AluSq SINE Alu 1 298 -15 612 246 0 0 chr15 17838179 17838301 -83542220 + FLAM_A SINE Alu 1 122 -11 979 188 11 11 chr15 17838335 17838516 -83542005 + AluJo SINE Alu 1 181 -131 1403 117 117 0 chr15 17838517 17838730 -83541791 - AluSx SINE Alu -15 297 60 710 182 0 0 chr15 17838736 17838857 -83541664 + AluJo SINE Alu 190 310 -2 1453 191 57 7 chr15 17838875 17839158 -83541363 + AluJb SINE Alu 1 297 -15 2009 157 0 0 chr15 17839159 17839453 -83541068 - AluSx SINE Alu -18 294 1 2506 68 0 0 chr15 17839461 17839754 -83540767 - AluY SINE Alu -18 293 1 21 0 0 0 chr15 17839761 17839782 -83540739 + AT_rich Low_complexity Low_complexity 1 21 0 284 321 28 0 chr15 17839909 17840018 -83540503 - MIR SINE MIR -139 123 12 2074 126 11 0 chr15 17840338 17840624 -83539897 + AluSg SINE Alu 4 292 -18 1026 116 60 101 chr15 17840626 17840687 -83539834 - L1MB7 LINE L1 -16 6168 6106 1985 127 0 17 chr15 17840687 17840986 -83539535 - AluJo SINE Alu -13 299 6 1026 116 60 101 chr15 17840986 17841192 -83539329 - L1MB7 LINE L1 -78 6106 5912 409 304 192 14 chr15 17841196 17841680 -83538841 + L2 LINE L2 1823 2392 -922 306 166 59 27 chr15 17841686 17841793 -83538728 + AluJ/FLAM SINE Alu 2 86 -216 887 192 11 6 chr15 17841976 17842153 -83538368 + FRAM SINE Alu 1 173 -3 272 297 60 22 chr15 17842202 17842387 -83538134 + L2 LINE L2 2434 2625 -689 379 338 163 12 chr15 17842492 17842915 -83537606 + L2 LINE L2 2827 3313 0 1844 145 28 3 chr15 17843026 17843308 -83537213 - AluSx SINE Alu -23 289 1 1612 168 0 67 chr15 17843588 17843722 -83536799 + AluJo SINE Alu 1 142 -170 2470 83 0 0 chr15 17843722 17844024 -83536497 + AluY SINE Alu 1 302 -9 1612 168 0 67 chr15 17844024 17844204 -83536317 + AluJo SINE Alu 142 294 -18 1559 142 4 0 chr15 17844657 17844882 -83535639 + AluSq SINE Alu 35 260 -53 1714 131 0 46 chr15 17844910 17845046 -83535475 + AluSx SINE Alu 1 121 -191 2176 110 0 10 chr15 17845046 17845347 -83535174 + AluSg SINE Alu 1 298 -12 1714 131 0 46 chr15 17845347 17845470 -83535051 + AluSx SINE Alu 121 248 -64 2103 118 45 0 chr15 17846065 17846353 -83534168 - AluSx SINE Alu -11 301 1 1747 155 7 20 chr15 17846404 17846701 -83533820 + AluJo SINE Alu 17 309 -3 1837 170 7 0 chr15 17846706 17846995 -83533526 + AluJo SINE Alu 1 291 -21 23 0 0 0 chr15 17846995 17847018 -83533503 + AT_rich Low_complexity Low_complexity 1 23 0 2161 131 3 0 chr15 17847061 17847366 -83533155 + AluSx SINE Alu 1 306 -6 1663 160 25 110 chr15 17847382 17847781 -83532740 + MLT1A1 LTR MaLR 1 365 0 1985 124 4 4 chr15 17847981 17848256 -83532265 + AluSg SINE Alu 1 275 -35 1917 116 40 4 chr15 17848549 17848847 -83531674 + AluSq SINE Alu 1 308 0 1193 144 5 21 chr15 17848957 17849145 -83531376 - AluJb SINE Alu -26 286 102 331 276 74 37 chr15 17899252 17899415 -83481106 - L1M4 LINE L1 -938 5208 5040 27 49 0 0 chr15 17899415 17899456 -83481065 + AT_rich Low_complexity Low_complexity 1 41 0 450 264 60 53 chr15 17899657 17899941 -83480580 - L1M4 LINE L1 -1091 5055 4770 21 95 0 0 chr15 17900087 17900150 -83480371 + AT_rich Low_complexity Low_complexity 1 63 0 967 114 29 105 chr15 17900297 17900404 -83480117 + L1PA16 LINE L1 5932 6017 -149 1702 173 0 3 chr15 17900404 17900693 -83479828 + AluJb SINE Alu 1 288 -24 967 114 29 105 chr15 17900693 17900795 -83479726 + L1PA16 LINE L1 6017 6125 -41 917 213 0 0 chr15 17900951 17901151 -83479370 + AluSg/x SINE Alu 116 315 0 1182 134 18 0 chr15 17901386 17901557 -83478964 + AluSq SINE Alu 1 174 -139 1822 178 0 7 chr15 17901940 17902238 -83478283 - AluJo SINE Alu -16 296 1 2294 155 62 56 chr15 17902299 17902801 -83477720 + LTR9 LTR ERV1 1 505 -107 236 71 71 0 chr15 17902808 17902864 -83477657 + CT-rich Low_complexity Low_complexity 2 61 0 200 156 44 0 chr15 17904747 17904792 -83475729 + (CA)n Simple_repeat Simple_repeat 2 48 0 1974 148 10 7 chr15 17905144 17905442 -83475079 + AluSx SINE Alu 1 299 -13 388 175 92 25 chr15 17905448 17905568 -83474953 - L1ME4a LINE L1 -2 6119 5992 186 103 0 0 chr15 17905904 17905933 -83474588 + (CATA)n Simple_repeat Simple_repeat 2 30 0 4460 26 4 4 chr15 17905991 17906521 -83474000 - L1PA4 LINE L1 -10 6145 5616 2987 30 0 0 chr15 17906521 17906994 -83473527 + L1PA4 LINE L1 5137 5609 -546 290 345 73 9 chr15 17907197 17907307 -83473214 - L2 LINE L2 -3 3269 3153 2258 95 0 3 chr15 17907516 17907820 -83472701 - AluY SINE Alu -8 303 1 26 0 0 0 chr15 17910193 17910219 -83470302 + AT_rich Low_complexity Low_complexity 1 26 0 217 226 113 47 chr15 17910549 17910655 -83469866 + MIR SINE MIR 100 212 -50 338 310 129 19 chr15 17910870 17911025 -83469496 + MIR3 SINE MIR 13 184 -24 243 0 0 0 chr15 17911545 17911572 -83468949 + (T)n Simple_repeat Simple_repeat 1 27 0 2274 117 0 0 chr15 17911874 17912182 -83468339 + AluSq SINE Alu 1 308 -5 548 14 14 0 chr15 17912937 17913006 -83467515 + (TA)n Simple_repeat Simple_repeat 1 70 0 22 56 0 0 chr15 17913851 17913887 -83466634 + AT_rich Low_complexity Low_complexity 1 36 0 492 171 12 0 chr15 17913887 17913969 -83466552 + AluJ/FLAM SINE Alu 1 83 -229 1339 176 68 0 chr15 17914069 17914319 -83466202 + AluJo SINE Alu 38 304 -8 288 307 0 0 chr15 17914510 17914598 -83465923 + MIR SINE MIR 175 262 0 2161 112 0 10 chr15 17914679 17914983 -83465538 - AluY SINE Alu -10 301 1 286 260 57 24 chr15 17915020 17915143 -83465378 - L1ME4a LINE L1 -51 6070 5944 1969 119 3 31 chr15 17915310 17915596 -83464925 + AluSq SINE Alu 5 282 -31 180 0 0 0 chr15 17915597 17915617 -83464904 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 691 251 15 41 chr15 17915627 17915896 -83464625 + L1MEd LINE L1 1010 1309 -4862 884 122 0 7 chr15 17916893 17917032 -83463489 - AluSg/x SINE Alu -2 310 173 2656 148 20 2 chr15 17917032 17917526 -83462995 - L1MA4 LINE L1 -287 6018 5498 2110 135 0 3 chr15 17918794 17919105 -83461416 + AluSx SINE Alu 1 310 -2 293 255 117 11 chr15 17919649 17919743 -83460778 + MIR SINE MIR 159 262 0 1494 235 49 4 chr15 17919779 17920055 -83460466 - L1ME4a LINE L1 -465 5701 5389 2188 88 0 3 chr15 17920055 17920340 -83460181 - AluSx SINE Alu -24 288 5 1494 235 49 4 chr15 17920340 17920525 -83459996 - L1ME4a LINE L1 -777 5389 5214 2098 114 0 0 chr15 17921017 17921298 -83459223 + AluSg SINE Alu 7 287 -23 24 0 0 0 chr15 17921301 17921325 -83459196 + AT_rich Low_complexity Low_complexity 1 24 0 2146 102 3 0 chr15 17921537 17921843 -83458678 + AluSx SINE Alu 1 307 0 1907 146 0 29 chr15 17922378 17922694 -83457827 + AluSx SINE Alu 3 309 -3 2180 108 7 0 chr15 17923380 17923667 -83456854 + AluSx SINE Alu 1 289 -23 672 121 0 10 chr15 17924057 17924156 -83456365 - MER4A LTR ERV1 -566 98 1 1006 121 79 11 chr15 17924156 17924346 -83456175 + L1MA3 LINE L1 5705 5907 -398 * 2727 188 86 13 chr15 17924344 17925021 -83455500 - L1 LINE L1 -1446 4700 3975 * 6838 121 28 19 chr15 17925013 17926501 -83454020 - L1PA3 LINE L1 -2 6153 4679 2009 103 0 21 chr15 17926501 17926810 -83453711 - AluSx SINE Alu 0 311 9 6838 121 28 19 chr15 17926810 17927024 -83453497 - L1PA3 LINE L1 -1476 4679 3052 2084 123 6 12 chr15 17927025 17927358 -83453163 - L1PB2 LINE L1 0 7570 7240 2997 199 25 27 chr15 17927358 17928321 -83452200 - L1PB2 LINE L1 -622 6948 5996 3207 213 32 10 chr15 17928342 17929255 -83451266 - L1PB2 LINE L1 -3114 4451 3509 642 365 148 25 chr15 17929258 17929640 -83450881 - LTR28 LTR ERV1 -676 344 1 7622 228 42 8 chr15 17929641 17931265 -83449256 - L1M1 LINE L1 -5870 1695 17 395 191 0 0 chr15 17933123 17933207 -83447314 - L1MA4 LINE L1 -179 6121 6041 620 238 33 0 chr15 17933226 17933377 -83447144 + FRAM SINE Alu 1 156 -20 1581 214 3 0 chr15 17933379 17933682 -83446839 + AluJo SINE Alu 1 304 -8 273 194 16 23 chr15 17933803 17933889 -83446632 + L1MB5 LINE L1 5838 5932 -238 1793 138 25 14 chr15 17933928 17934210 -83446311 + AluSx SINE Alu 3 287 -25 2534 258 58 48 chr15 17934531 17937019 -83443502 - L1M4 LINE L1 -3591 3053 455 268 188 115 10 chr15 17937016 17937112 -83443409 - L1M4 LINE L1 -3081 3065 2960 * 1269 240 14 7 chr15 17937113 17937400 -83443121 - AluJb SINE Alu -23 289 1 295 200 38 135 chr15 17937508 17937693 -83442828 + MER53 DNA DNA 23 189 0 2016 118 14 3 chr15 17938616 17938904 -83441617 + AluSg SINE Alu 1 291 -19 8048 103 32 15 chr15 17938940 17939717 -83440804 - HSMAR1 DNA Mariner 0 1287 483 2195 124 0 0 chr15 17939717 17940024 -83440497 + AluSx SINE Alu 1 307 -5 8048 103 32 15 chr15 17940024 17940417 -83440104 - HSMAR1 DNA Mariner -804 483 98 701 171 0 0 chr15 17940716 17940827 -83439694 - AluJb SINE Alu -201 111 1 786 210 80 34 chr15 17941026 17941057 -83439464 + L1ME3A LINE L1 5889 5917 -253 774 103 0 0 chr15 17941057 17941164 -83439357 - U6 snRNA snRNA 0 107 1 786 210 80 34 chr15 17941164 17941394 -83439127 + L1ME3A LINE L1 5917 6162 -8 262 186 57 14 chr15 17941555 17941625 -83438896 - L1ME3A LINE L1 -3 6167 6095 236 352 47 23 chr15 17941715 17941843 -83438678 + MIR SINE MIR 21 151 -111 405 221 43 80 chr15 17942036 17942199 -83438322 - MIR SINE MIR -16 246 90 1501 186 62 0 chr15 17942234 17942509 -83438012 - AluJb SINE Alu -20 292 1 643 232 47 62 chr15 17943045 17943256 -83437265 - L1ME1 LINE L1 -74 6092 5885 386 236 0 22 chr15 17943256 17943345 -83437176 - AluJo SINE Alu -166 136 50 933 175 55 23 chr15 17943349 17943566 -83436955 - L1ME1 LINE L1 -260 5906 5683 1736 156 43 0 chr15 17943952 17944234 -83436287 - AluJb SINE Alu -14 298 5 7110 258 72 29 chr15 17944247 17948270 -83432251 + L1MD2 LINE L1 1046 5208 -1007 1332 126 0 42 chr15 17948277 17948492 -83432029 + AluSc SINE Alu 1 206 -103 615 190 20 99 chr15 17948592 17948679 -83431842 + L1MD2 LINE L1 5298 5390 -846 1765 121 16 72 chr15 17948679 17948986 -83431535 - AluSx SINE Alu -18 294 5 615 190 20 99 chr15 17948986 17949109 -83431412 + L1MD2 LINE L1 5390 5493 -743 203 331 107 38 chr15 17949120 17949383 -83431138 - L2 LINE L2 -665 2649 2369 372 271 33 46 chr15 17949434 17949674 -83430847 - L1MC5 LINE L1 -179 7782 7546 1078 237 67 3 chr15 17950840 17951140 -83429381 + L1MD2 LINE L1 5973 6291 -137 22 0 0 0 chr15 17951357 17951379 -83429142 + AT_rich Low_complexity Low_complexity 1 22 0 497 125 20 0 chr15 17951747 17951839 -83428682 - L1MD1 LINE L1 0 7995 6146 7582 29 8 0 chr15 17952148 17953522 -83426999 - L1PA4 LINE L1 -1 6154 4776 534 275 0 0 chr15 17954005 17954125 -83426396 - FLAM_C SINE Alu -11 132 13 365 304 5 77 chr15 17954560 17954754 -83425767 + MLT1E2 LTR MaLR 1 180 -446 23 54 0 0 chr15 17956666 17956703 -83423818 + AT_rich Low_complexity Low_complexity 1 37 0 32 26 0 0 chr15 17957492 17957531 -83422990 + AT_rich Low_complexity Low_complexity 1 39 0 3699 211 57 27 chr15 17959059 17960962 -83419559 - L1MA8 LINE L1 -3 6288 4326 5133 136 66 7 chr15 17960984 17961935 -83418586 - L1MA2 LINE L1 0 6304 5298 512 256 175 6 chr15 17962527 17962887 -83417634 + L1MB2 LINE L1 1071 1491 -4822 461 290 96 21 chr15 17962924 17963294 -83417227 + L1MB2 LINE L1 1363 2158 -4225 440 223 100 50 chr15 17963520 17963957 -83416564 + L1MB2 LINE L1 2137 2611 -3771 268 252 158 12 chr15 17964204 17964452 -83416069 + L1MB2 LINE L1 2837 3119 -3263 804 281 30 9 chr15 17964461 17964792 -83415729 + L1MB2 LINE L1 4757 5094 -1288 424 256 170 0 chr15 17964787 17965010 -83415511 + L1MB2 LINE L1 5914 6174 -233 * 2191 94 10 7 chr15 17965036 17965333 -83415188 + AluSx SINE Alu 1 298 -14 802 282 64 88 chr15 17966217 17966841 -83413680 + L1M3 LINE L1 2 610 -5345 2867 238 74 44 chr15 17966884 17967491 -83413030 + L1M3 LINE L1 3978 4565 -1491 2334 98 0 7 chr15 17967491 17967787 -83412734 - AluSg SINE Alu -16 294 1 2867 238 74 44 chr15 17967787 17968520 -83412001 + L1M3 LINE L1 4565 5367 -689 376 183 0 0 chr15 17968529 17968600 -83411921 + L1PB4 LINE L1 6045 6115 -41 2118 87 18 0 chr15 17969207 17969545 -83410976 - AluSc SINE Alu 0 343 1 402 294 114 92 chr15 17970439 17971273 -83409248 + L1M4 LINE L1 445 1296 -5553 1327 181 42 19 chr15 17973286 17973416 -83407105 - L1MA9 LINE L1 -387 5925 5799 261 0 0 0 chr15 17973416 17973445 -83407076 + (TG)n Simple_repeat Simple_repeat 2 30 0 1327 181 42 19 chr15 17973445 17973624 -83406897 - L1MA9 LINE L1 -513 5799 5609 1285 185 39 4 chr15 17973618 17973899 -83406622 + L1MA9 LINE L1 5972 6262 -50 * 286 187 22 112 chr15 17974151 17974285 -83406236 - L1MEc LINE L1 -4258 2138 2017 1656 112 29 105 chr15 17974286 17974627 -83405894 - AluYb8 SINE Alu 0 317 1 432 0 0 0 chr15 17975807 17975855 -83404666 + (CA)n Simple_repeat Simple_repeat 1 48 0 2128 119 7 10 chr15 17976034 17976336 -83404185 + AluSx SINE Alu 1 301 -11 327 138 231 0 chr15 17978465 17978530 -83401991 - MADE1 DNA Mariner 0 80 1 1075 274 18 26 chr15 17979841 17980073 -83400448 + L1M4 LINE L1 3355 3587 -3261 3008 102 13 11 chr15 17980073 17980535 -83399986 - L1PA10 LINE L1 0 6168 5706 1075 274 18 26 chr15 17980535 17980916 -83399605 + L1M4 LINE L1 3587 3963 -2885 348 125 0 0 chr15 17981148 17981212 -83399309 + (TCTCTG)n Simple_repeat Simple_repeat 3 66 0 2019 82 50 4 chr15 17981212 17981491 -83399030 - AluY SINE Alu -19 292 1 1834 164 3 3 chr15 17984361 17984654 -83395867 - AluSg1 SINE Alu -15 294 2 2056 125 4 4 chr15 17984830 17985145 -83395376 + AluSg SINE Alu 1 315 0 2509 117 13 8 chr15 17986339 17986732 -83393789 + L1PA12 LINE L1 5774 6168 0 502 259 0 32 chr15 17987054 17987239 -83393282 - MER104 DNA MER2_type -1 179 1 562 292 93 40 chr15 17987341 17987589 -83392932 - MIR SINE MIR -1 261 4 318 26 0 0 chr15 17988783 17988804 -83391717 + (TG)n Simple_repeat Simple_repeat 1 60 0 318 26 0 0 chr15 17988804 17988843 -83391678 + (TG)n Simple_repeat Simple_repeat 2 40 0 264 367 36 36 chr15 17989343 17989482 -83391039 - MER5B DNA MER1_type 0 178 40 710 186 0 0 chr15 17989487 17989605 -83390916 + FLAM_A SINE Alu 1 118 -15 1073 207 161 8 chr15 17989779 17990040 -83390481 - AluJb SINE Alu -1 301 1 340 293 101 22 chr15 17991789 17991999 -83388522 + MIR SINE MIR 7 231 -31 572 189 9 9 chr15 17993888 17993994 -83386527 + U6 snRNA snRNA 1 106 -1 295 371 53 0 chr15 17994690 17994841 -83385680 - MIR SINE MIR -47 215 57 534 277 188 15 chr15 17995858 17996252 -83384269 - MLT1L LTR MaLR -153 462 1 181 296 56 28 chr15 17996258 17996329 -83384192 - L2 LINE L2 -565 2749 2677 852 224 47 47 chr15 17996334 17996548 -83383973 - MER58A DNA MER1_type -3 221 8 2066 153 7 0 chr15 17998329 17998636 -83381885 + AluSc SINE Alu 1 309 0 1364 195 136 49 chr15 17998739 17999228 -83381293 - LTR61 LTR ERV1 -2 593 1 28 61 0 0 chr15 17999722 17999771 -83380750 + AT_rich Low_complexity Low_complexity 1 49 0 52 50 0 0 chr15 18000815 18000895 -83379626 + AT_rich Low_complexity Low_complexity 1 80 0 1597 166 7 7 chr15 18002472 18002761 -83377760 - L1PA15 LINE L1 -1 6164 5876 336 313 173 50 chr15 18003421 18003983 -83376538 - L1M2 LINE L1 -5973 876 246 2106 129 0 3 chr15 18004734 18005036 -83375485 - AluSx SINE Alu -11 301 1 195 292 118 73 chr15 18005093 18005271 -83375250 - MIR3 SINE MIR 0 208 23 263 300 36 36 chr15 18006025 18006135 -83374386 + L2 LINE L2 3204 3313 0 399 261 120 20 chr15 18006445 18006631 -83373890 + MIR3 SINE MIR 3 206 -2 295 392 0 0 chr15 18007248 18007350 -83373171 + MIR SINE MIR 48 149 -59 310 258 17 17 chr15 18007874 18007994 -83372527 - MER112 DNA MER1_type -103 157 38 841 154 24 0 chr15 18008016 18008139 -83372382 - FLAM_C SINE Alu -17 126 1 907 89 0 16 chr15 18008574 18008697 -83371824 - AluSg/x SINE Alu -24 288 168 2151 121 0 0 chr15 18009074 18009363 -83371158 - AluSx SINE Alu -23 289 1 205 264 22 22 chr15 18009575 18009666 -83370855 + (TA)n Simple_repeat Simple_repeat 1 91 0 370 185 0 0 chr15 18010152 18010217 -83370304 - MER58A DNA MER1_type 0 224 160 941 167 25 19 chr15 18010221 18010383 -83370138 - AluJb SINE Alu -18 294 132 444 224 10 10 chr15 18010396 18010494 -83370027 - MER58A DNA MER1_type -9 98 1 25 65 0 0 chr15 18010943 18010989 -83369532 + AT_rich Low_complexity Low_complexity 1 46 0 2501 289 133 17 chr15 18011094 18011472 -83369049 + L2 LINE L2 1777 2110 -1203 1996 156 0 0 chr15 18011472 18011773 -83368748 - AluSx SINE Alu -11 301 1 2501 289 133 17 chr15 18011773 18012529 -83367992 + L2 LINE L2 2110 3040 -273 452 261 142 54 chr15 18012810 18013070 -83367451 + L2 LINE L2 3031 3313 0 21 0 0 0 chr15 18013203 18013224 -83367297 + AT_rich Low_complexity Low_complexity 1 21 0 1940 149 3 0 chr15 18013330 18013625 -83366896 - AluSx SINE Alu -16 296 1 22 0 0 0 chr15 18013630 18013652 -83366869 + AT_rich Low_complexity Low_complexity 1 22 0 1485 147 72 33 chr15 18014536 18014856 -83365665 + THE1C LTR MaLR 5 340 -35 507 73 0 0 chr15 18014856 18014924 -83365597 + (TA)n Simple_repeat Simple_repeat 1 68 0 1485 147 72 33 chr15 18014924 18014936 -83365585 + THE1C LTR MaLR 340 350 -25 3294 216 45 10 chr15 18014936 18015549 -83364972 - L1P5 LINE L1 -388 5766 5176 315 0 0 0 chr15 18015549 18015584 -83364937 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3294 216 45 10 chr15 18015584 18016525 -83363996 - L1P5 LINE L1 -978 5176 4125 3098 147 29 10 chr15 18016765 18017276 -83363245 + MER1A DNA MER1_type 1 521 -8 201 216 39 0 chr15 18018491 18018542 -83361979 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 21 0 0 0 chr15 18018579 18018600 -83361921 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr15 18019403 18019427 -83361094 + AT_rich Low_complexity Low_complexity 1 24 0 1685 205 10 0 chr15 18019947 18020240 -83360281 - AluJo SINE Alu -16 296 1 2357 89 3 3 chr15 18020553 18020856 -83359665 - AluSq SINE Alu -10 303 1 824 176 151 114 chr15 18021402 18021754 -83358767 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr15 18023290 18023311 -83357210 + AT_rich Low_complexity Low_complexity 1 21 0 367 186 15 7 chr15 18025045 18025140 -83355381 + L1M3 LINE L1 5683 5780 -382 27 29 0 0 chr15 18025409 18025443 -83355078 + AT_rich Low_complexity Low_complexity 1 34 0 278 259 0 12 chr15 18025578 18025659 -83354862 + (TATATG)n Simple_repeat Simple_repeat 5 84 0 402 301 75 63 chr15 18025804 18026203 -83354318 + L1M4 LINE L1 2110 2513 -3633 1773 182 106 40 chr15 18026559 18027032 -83353489 + MLT1D LTR MaLR 1 504 -1 279 167 0 0 chr15 18027487 18027535 -83352986 - L1PA12 LINE L1 -6273 1308 1261 4165 236 56 34 chr15 18027555 18030008 -83350513 + L1PA13 LINE L1 482 3042 -3755 2490 87 0 0 chr15 18030017 18030328 -83350193 + AluY SINE Alu 1 311 0 1450 223 127 19 chr15 18030420 18030901 -83349620 + MER4-int LTR ERV1 109 641 -5957 243 0 0 0 chr15 18031734 18031761 -83348760 + (TG)n Simple_repeat Simple_repeat 2 28 0 857 192 0 0 chr15 18031766 18031912 -83348609 - AluSg/x SINE Alu -31 281 136 1668 179 0 0 chr15 18033093 18033373 -83347148 + L1PA12 LINE L1 637 916 -6665 893 101 0 7 chr15 18033378 18033517 -83347004 + L1PA12 LINE L1 1616 1753 -5828 297 270 71 73 chr15 18033912 18034602 -83345919 + HSREP522 Satellite telomeric 1 688 -14 981 276 0 0 chr15 18035049 18035303 -83345218 + AluY SINE Alu 58 311 0 2092 155 77 14 chr15 18035341 18035887 -83344634 + MER4-int LTR ERV1 29 652 -5946 669 159 82 159 chr15 18035914 18036278 -83344243 + MER4-int LTR ERV1 762 1097 -5501 6092 86 6 0 chr15 18036286 18037358 -83343163 - L1PA7 LINE L1 -1 6153 5051 3066 119 8 4 chr15 18037384 18037897 -83342624 + L1P LINE L1 4555 5069 -1077 279 0 0 0 chr15 18038697 18038728 -83341793 + (T)n Simple_repeat Simple_repeat 1 31 0 2073 146 0 3 chr15 18038728 18039091 -83341430 - L1P LINE L1 -3825 2321 1960 1352 234 3 17 chr15 18039261 18039560 -83340961 - AluJo SINE Alu -16 296 2 1225 196 30 9 chr15 18040520 18040985 -83339536 + L1P4 LINE L1 5027 5496 -670 26 0 0 0 chr15 18040985 18041011 -83339510 + AT_rich Low_complexity Low_complexity 1 26 0 2157 113 0 10 chr15 18041131 18041431 -83339090 + AluSg SINE Alu 1 297 -13 1008 285 87 63 chr15 18041512 18043329 -83337192 - L1MCc LINE L1 -4326 2796 727 272 282 201 11 chr15 18044550 18044724 -83335797 - MIR SINE MIR 0 262 56 371 62 0 75 chr15 18044918 18044998 -83335523 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 1586 189 3 25 chr15 18045001 18045318 -83335203 - AluJb SINE Alu -2 310 1 2220 196 37 4 chr15 18046744 18047263 -83333258 - L1MB3 LINE L1 -2 6181 5646 686 231 171 52 chr15 18047852 18048332 -83332189 + L1M4 LINE L1 4399 4935 -1211 396 0 0 0 chr15 18048343 18048387 -83332134 + (TG)n Simple_repeat Simple_repeat 1 44 0 267 309 47 0 chr15 18048431 18048580 -83331941 + L1MA10 LINE L1 6169 6324 -10 478 278 87 20 chr15 18048818 18049070 -83331451 + LTR37B LTR ERV1 198 466 -2 309 298 24 0 chr15 18050368 18050536 -83329985 + (CA)n Simple_repeat Simple_repeat 2 173 0 243 270 19 13 chr15 18050578 18050737 -83329784 + (CA)n Simple_repeat Simple_repeat 2 161 0 282 238 49 12 chr15 18050755 18050919 -83329602 + (CA)n Simple_repeat Simple_repeat 2 171 0 2140 88 0 3 chr15 18051047 18051343 -83329178 - AluY SINE Alu -16 295 1 25 0 0 0 chr15 18052500 18052525 -83327996 + AT_rich Low_complexity Low_complexity 1 25 0 3000 53 0 0 chr15 18052528 18052978 -83327543 + L1P2 LINE L1 4989 5438 -716 6277 149 18 13 chr15 18054464 18056058 -83324463 - L1MA1 LINE L1 -9 6293 4687 2221 125 3 0 chr15 18056205 18056517 -83324004 + AluSq SINE Alu 1 313 0 1030 234 64 72 chr15 18056839 18057355 -83323166 - L1ME1 LINE L1 -19 6147 5636 298 0 0 0 chr15 18058597 18058636 -83321885 + HY3 scRNA scRNA 62 100 -1 27 0 0 0 chr15 18058636 18058663 -83321858 + AT_rich Low_complexity Low_complexity 1 27 0 1834 198 58 28 chr15 18059195 18059696 -83320825 - L1MA7 LINE L1 -7 6284 5769 2262 211 60 28 chr15 18059700 18060348 -83320173 - L1MB8 LINE L1 -2 6176 5508 * 3975 193 40 18 chr15 18060342 18061860 -83318661 - L1MA7 LINE L1 -510 5781 4230 21 0 0 0 chr15 18063172 18063193 -83317328 + AT_rich Low_complexity Low_complexity 1 21 0 333 140 0 0 chr15 18064320 18064377 -83316144 + (A)n Simple_repeat Simple_repeat 1 57 0 33 73 0 0 chr15 18065084 18065152 -83315369 + AT_rich Low_complexity Low_complexity 1 68 0 454 230 0 9 chr15 18065152 18065265 -83315256 - L1MA7 LINE L1 -1904 4242 4131 425 257 167 46 chr15 18068886 18069095 -83311426 - MIR SINE MIR 0 262 34 199 158 26 0 chr15 18069120 18069158 -83311363 + MIR SINE MIR 102 140 -122 273 167 0 0 chr15 18070038 18070092 -83310429 + (CA)n Simple_repeat Simple_repeat 2 55 0 404 249 35 47 chr15 18070808 18070977 -83309544 + MLT1L LTR MaLR 422 588 -27 327 235 287 0 chr15 18071088 18071203 -83309318 + MIR SINE MIR 18 165 -97 1284 231 4 4 chr15 18071604 18071881 -83308640 - AluJb SINE Alu -35 277 1 25 31 0 0 chr15 18071961 18071993 -83308528 + AT_rich Low_complexity Low_complexity 1 32 0 1770 159 120 26 chr15 18072580 18072971 -83307550 + MSTA LTR MaLR 1 428 0 737 195 0 8 chr15 18073299 18073427 -83307094 + AluJb SINE Alu 6 132 -180 578 231 88 6 chr15 18073459 18073639 -83306882 + FAM SINE Alu 1 59 0 216 0 0 0 chr15 18074254 18074278 -83306243 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1012 199 5 0 chr15 18074396 18074582 -83305939 - MER3 DNA MER1_type 0 209 23 22 0 0 0 chr15 18075355 18075377 -83305144 + AT_rich Low_complexity Low_complexity 1 22 0 503 281 88 38 chr15 18075496 18075719 -83304802 + L1ME4a LINE L1 5535 5780 -341 1597 174 7 3 chr15 18075719 18076006 -83304515 - AluSx SINE Alu -23 289 2 503 281 88 38 chr15 18076006 18076102 -83304419 + L1ME4a LINE L1 5780 5870 -251 262 309 31 62 chr15 18076182 18076344 -83304177 + MIR SINE MIR 105 261 -1 183 114 0 0 chr15 18076373 18076408 -83304113 + (CA)n Simple_repeat Simple_repeat 1 35 0 326 252 18 72 chr15 18076454 18076565 -83303956 + L1ME4a LINE L1 6014 6118 -3 1512 201 10 16 chr15 18076607 18076920 -83303601 + AluJo SINE Alu 1 311 -1 2310 130 103 140 chr15 18076962 18077555 -83302966 - LTR4 LTR ERV1 0 596 26 207 167 0 0 chr15 18078681 18078723 -83301798 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 720 236 62 0 chr15 18078816 18078977 -83301544 + MIR SINE MIR 20 190 -72 462 210 70 51 chr15 18079478 18079656 -83300865 + MLT1D LTR MaLR 6 193 -289 1104 181 4 69 chr15 18079658 18079934 -83300587 + AluJb SINE Alu 5 262 -50 1336 239 52 49 chr15 18083885 18084417 -83296104 + MER67C LTR ERV1 22 514 0 23 33 0 0 chr15 18084693 18084723 -83295798 + AT_rich Low_complexity Low_complexity 1 30 0 257 327 47 0 chr15 18084862 18084969 -83295552 - MIR SINE MIR -71 191 80 538 299 35 51 chr15 18085117 18085544 -83294977 + L1M3e LINE L1 466 1675 -4890 7931 234 43 33 chr15 18085782 18088632 -83291889 + L1M3e LINE L1 2007 4903 -2662 1474 184 6 32 chr15 18088632 18088947 -83291574 + AluJo SINE Alu 6 312 0 7931 234 43 33 chr15 18088947 18090097 -83290424 + L1M3e LINE L1 4903 6041 -1524 24 32 0 0 chr15 18090619 18090650 -83289871 + GC_rich Low_complexity Low_complexity 1 31 0 405 294 17 6 chr15 18092396 18092573 -83287948 + (CA)n Simple_repeat Simple_repeat 1 179 0 257 315 9 0 chr15 18092607 18092718 -83287803 + (CA)n Simple_repeat Simple_repeat 1 112 0 1069 169 15 0 chr15 18093728 18093923 -83286598 + MER49 LTR ERV1 715 912 -11 22 56 0 0 chr15 18095509 18095545 -83284976 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr15 18097054 18097084 -83283437 + AT_rich Low_complexity Low_complexity 1 30 0 38 39 0 0 chr15 18097107 18097159 -83283362 + AT_rich Low_complexity Low_complexity 1 52 0 318 296 7 44 chr15 18097185 18097320 -83283201 - L1MDa LINE L1 -3961 2465 2336 2034 125 10 0 chr15 18097323 18097628 -83282893 - AluSp SINE Alu -3 310 3 590 318 52 16 chr15 18097851 18098235 -83282286 - L1MDa LINE L1 -3568 2858 2461 234 238 161 52 chr15 18098332 18098525 -83281996 - L1MDa LINE L1 -4282 2325 2112 378 312 50 72 chr15 18098552 18098707 -83281814 - L1MDa LINE L1 -4503 1923 1773 4563 17 6 0 chr15 18098707 18099224 -83281297 + L1PA3 LINE L1 5636 6155 0 378 312 50 72 chr15 18099224 18099289 -83281232 - L1MDa LINE L1 -4653 1773 1708 243 355 73 32 chr15 18099622 18099746 -83280775 - MIR SINE MIR -57 151 23 302 313 57 17 chr15 18100800 18100976 -83279545 + HERV16 LTR ERVL 2781 2963 -2033 970 65 0 0 chr15 18105010 18105133 -83275388 + AluY SINE Alu 1 123 -188 22 35 0 0 chr15 18105133 18105162 -83275359 + AT_rich Low_complexity Low_complexity 1 29 0 21 95 0 0 chr15 18105327 18105390 -83275131 + AT_rich Low_complexity Low_complexity 1 63 0 309 129 86 43 chr15 18107517 18107587 -83272934 + AluJ/FRAM SINE Alu 229 301 -1 1987 124 0 3 chr15 18107595 18107894 -83272627 + AluSp SINE Alu 1 298 -15 1496 168 37 17 chr15 18108204 18108501 -83272020 - AluJb SINE Alu -9 303 1 256 286 174 39 chr15 18108555 18108589 -83271932 + MIR SINE MIR 2 30 -232 204 67 0 0 chr15 18108589 18108619 -83271902 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 256 286 174 39 chr15 18108619 18108762 -83271759 + MIR SINE MIR 30 203 -59 1675 101 0 0 chr15 18108769 18109007 -83271514 - AluSg/x SINE Alu -7 303 66 239 186 0 17 chr15 18109809 18109868 -83270653 + CT-rich Low_complexity Low_complexity 5 62 0 22 0 0 0 chr15 18110736 18110758 -83269763 + AT_rich Low_complexity Low_complexity 1 22 0 1968 150 0 3 chr15 18110809 18111122 -83269399 - AluSx SINE Alu 0 312 1 2319 79 0 0 chr15 18112715 18113018 -83267503 - AluY SINE Alu -8 303 1 301 294 32 54 chr15 18113432 18113653 -83266868 + L1ME LINE L1 5547 5762 -359 301 335 152 6 chr15 18113878 18114042 -83266479 - MIR3 SINE MIR -7 201 14 1438 81 5 0 chr15 18114431 18114616 -83265905 + AluSp SINE Alu 1 186 -127 21 0 0 0 chr15 18114786 18114807 -83265714 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr15 18114969 18115011 -83265510 + (TAA)n Simple_repeat Simple_repeat 1 42 0 4647 70 22 31 chr15 18115049 18115486 -83265035 + PABL_B LTR ERV1 1 432 -235 2395 80 3 0 chr15 18115486 18115786 -83264735 + AluSp SINE Alu 1 301 -12 4647 70 22 31 chr15 18115786 18115993 -83264528 + PABL_B LTR ERV1 432 639 -28 326 336 76 72 chr15 18116185 18116700 -83263821 - LTR33A LTR ERVL -4 519 3 355 272 26 0 chr15 18116757 18116845 -83263676 - MIR3 SINE MIR -45 163 73 231 323 0 16 chr15 18116949 18117011 -83263510 + L2 LINE L2 3204 3264 -8 330 182 0 0 chr15 18117595 18117661 -83262860 + GA-rich Low_complexity Low_complexity 1 66 0 248 221 0 15 chr15 18118109 18118177 -83262344 + GA-rich Low_complexity Low_complexity 3 69 0 380 215 33 66 chr15 18118763 18118884 -83261637 + L1MC4 LINE L1 7434 7550 -492 453 292 38 14 chr15 18119314 18119523 -83260998 + L1MC4 LINE L1 7689 7902 -140 208 313 16 0 chr15 18119533 18119597 -83260924 + (TATG)n Simple_repeat Simple_repeat 4 68 0 338 230 36 43 chr15 18119598 18119737 -83260784 + L1MC4 LINE L1 7903 8040 -2 1557 157 28 0 chr15 18119806 18120054 -83260467 + AluJb SINE Alu 3 257 -55 271 207 0 0 chr15 18120138 18120196 -83260325 - MLT1I LTR MaLR -12 397 340 1522 186 11 0 chr15 18120341 18120656 -83259865 - AluJb SINE Alu 0 318 1 785 254 54 94 chr15 18121169 18121575 -83258946 + MLT1I LTR MaLR 18 407 -2 824 254 36 10 chr15 18122577 18122770 -83257751 - AluJb SINE Alu -28 284 87 2490 216 75 28 chr15 18123728 18124433 -83256088 - L1ME2 LINE L1 -37 6127 5390 229 200 0 0 chr15 18124470 18124510 -83256011 + L2 LINE L2 3265 3304 -9 1135 267 160 13 chr15 18126598 18127169 -83253352 - L2 LINE L2 -126 3187 2536 533 212 35 104 chr15 18127485 18127716 -83252805 + MER58C DNA MER1_type 1 215 0 21 0 0 0 chr15 18128721 18128742 -83251779 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr15 18128763 18128791 -83251730 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr15 18129418 18129446 -83251075 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr15 18129873 18129891 -83250630 + (CA)n Simple_repeat Simple_repeat 1 44 0 234 0 0 0 chr15 18129891 18129917 -83250604 + (CA)n Simple_repeat Simple_repeat 2 27 0 25 51 0 0 chr15 18130851 18130890 -83249631 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr15 18131385 18131407 -83249114 + AT_rich Low_complexity Low_complexity 1 22 0 465 297 62 16 chr15 18131615 18131807 -83248714 + L1ME LINE L1 3 203 -5867 320 280 33 47 chr15 18131848 18131998 -83248523 + L1ME LINE L1 595 742 -5328 231 225 0 0 chr15 18136277 18136317 -83244204 + Tigger7 DNA MER2_type 228 267 -2220 270 176 20 0 chr15 18136330 18136381 -83244140 + Tigger7 DNA MER2_type 2536 2587 0 2036 128 0 19 chr15 18136413 18136726 -83243795 - AluSx SINE Alu -5 307 1 2240 61 7 17 chr15 18137117 18137442 -83243079 - AluY SINE Alu 0 311 1 466 190 20 0 chr15 18137672 18137772 -83242749 + L1MB5 LINE L1 5743 5844 -330 285 289 40 27 chr15 18138265 18138414 -83242107 - L1MC/D LINE L1 -2342 5466 5316 * 857 215 47 6 chr15 18138393 18138623 -83241898 - L1MB4 LINE L1 -119 6047 5792 1357 248 126 63 chr15 18138623 18138960 -83241561 - L1MB4 LINE L1 -1375 4771 4457 246 114 0 0 chr15 18138960 18138995 -83241526 - U2 snRNA snRNA -153 35 1 1357 248 126 63 chr15 18138995 18139528 -83240993 - L1MB4 LINE L1 -1689 4457 3810 849 318 146 52 chr15 18139530 18140256 -83240265 + L2 LINE L2 1822 2615 -699 855 322 107 29 chr15 18140352 18140725 -83239796 + L2 LINE L2 2824 3239 -74 960 139 0 0 chr15 18140725 18140883 -83239638 + (TA)n Simple_repeat Simple_repeat 2 159 0 855 322 107 29 chr15 18140883 18140956 -83239565 + L2 LINE L2 3239 3305 -8 663 317 45 5 chr15 18141416 18141759 -83238762 - LTR33 LTR ERVL -2 519 102 334 291 60 15 chr15 18141833 18141967 -83238554 - MLT1L LTR MaLR -112 503 364 225 309 85 0 chr15 18142376 18142470 -83238051 - L3 LINE CR1 -157 1420 1319 26 82 0 0 chr15 18143606 18143667 -83236854 + AT_rich Low_complexity Low_complexity 1 61 0 225 182 45 30 chr15 18193891 18193957 -83186564 - MLT1J LTR MaLR -51 460 394 2101 114 3 23 chr15 18194155 18194461 -83186060 - AluSg SINE Alu -10 300 1 434 266 87 52 chr15 18194537 18194829 -83185692 - L1M4 LINE L1 -2163 3983 3674 2439 82 0 7 chr15 18194829 18195134 -83185387 - AluY SINE Alu -4 307 5 434 266 87 52 chr15 18195134 18195210 -83185311 - L1M4 LINE L1 -2472 3674 3602 22 35 0 0 chr15 18195398 18195427 -83185094 + AT_rich Low_complexity Low_complexity 1 29 0 2011 129 11 52 chr15 18196346 18196694 -83183827 + MER1B DNA MER1_type 3 336 -1 431 281 97 72 chr15 18196881 18197312 -83183209 + HAL1b LINE L1 70 511 -837 6697 67 7 70 chr15 18197675 18199100 -83181421 + SVA Other Other 339 1402 0 28 48 0 0 chr15 18199119 18199161 -83181360 + AT_rich Low_complexity Low_complexity 1 42 0 2558 55 0 16 chr15 18201237 18201547 -83178974 - AluY SINE Alu -6 305 1 872 221 37 28 chr15 18201677 18201894 -83178627 - MER20 DNA MER1_type 0 219 1 353 286 93 65 chr15 18202282 18202572 -83177949 + HAL1 LINE L1 43 340 -2167 1999 142 3 28 chr15 18202853 18203171 -83177350 - AluJo SINE Alu -2 310 1 2137 138 3 0 chr15 18203235 18203540 -83176981 + AluSp SINE Alu 1 306 -7 311 261 119 40 chr15 18203579 18203755 -83176766 + HAL1 LINE L1 881 1070 -1437 570 248 122 91 chr15 18203822 18204297 -83176224 + MLT1H1 LTR MaLR 66 555 0 908 256 125 27 chr15 18204298 18204810 -83175711 + HAL1 LINE L1 1069 1630 -877 251 204 0 0 chr15 18204840 18204889 -83175632 - MIR SINE MIR -30 232 184 243 0 0 0 chr15 18204901 18204928 -83175593 + (CA)n Simple_repeat Simple_repeat 2 28 0 2043 116 32 0 chr15 18205057 18205341 -83175180 + AluSx SINE Alu 1 293 -19 2369 81 0 0 chr15 18206021 18206318 -83174203 + AluY SINE Alu 1 297 -14 235 319 8 34 chr15 18206429 18206548 -83173973 + CT-rich Low_complexity Low_complexity 6 121 0 21 0 0 0 chr15 18207398 18207419 -83173102 + AT_rich Low_complexity Low_complexity 1 21 0 2099 124 13 0 chr15 18207612 18207910 -83172611 - AluSg SINE Alu -6 304 3 1809 142 68 0 chr15 18208070 18208224 -83172297 - AluSx SINE Alu -12 300 158 1647 90 14 0 chr15 18208224 18208435 -83172086 - AluSg SINE Alu -85 225 12 1809 142 68 0 chr15 18208435 18208561 -83171960 - AluSx SINE Alu -154 158 1 913 144 0 0 chr15 18208564 18208696 -83171825 - FLAM_C SINE Alu -11 132 1 826 221 47 35 chr15 18209101 18209359 -83171162 - MER58B DNA MER1_type -1 340 80 2314 101 0 3 chr15 18209917 18210213 -83170308 - AluSg SINE Alu -15 295 1 22 0 0 0 chr15 18210472 18210494 -83170027 + AT_rich Low_complexity Low_complexity 1 22 0 289 319 111 25 chr15 18211947 18212496 -83168025 + HAL1b LINE L1 293 888 -460 41 48 0 0 chr15 18212754 18212816 -83167705 + AT_rich Low_complexity Low_complexity 1 62 0 30 77 0 0 chr15 18212947 18213012 -83167509 + AT_rich Low_complexity Low_complexity 1 65 0 21 0 0 0 chr15 18214283 18214304 -83166217 + AT_rich Low_complexity Low_complexity 1 21 0 2309 85 0 3 chr15 18214367 18214661 -83165860 + AluY SINE Alu 1 293 -18 318 26 0 0 chr15 18214661 18214700 -83165821 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2095 107 0 53 chr15 18215073 18215391 -83165130 - AluSg SINE Alu -9 301 1 243 0 0 0 chr15 18216450 18216477 -83164044 + (CA)n Simple_repeat Simple_repeat 2 28 0 2001 125 0 34 chr15 18217301 18217598 -83162923 + AluSx SINE Alu 1 287 -25 25 0 0 0 chr15 18217598 18217623 -83162898 + AT_rich Low_complexity Low_complexity 1 25 0 650 218 69 55 chr15 18218296 18218498 -83162023 - MIR SINE MIR 0 262 58 26 0 0 0 chr15 18220960 18220986 -83159535 + AT_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr15 18221260 18221284 -83159237 + (T)n Simple_repeat Simple_repeat 1 24 0 7750 39 2 3 chr15 18223565 18224510 -83156011 + L1PA4 LINE L1 5209 6152 -3 2057 141 0 0 chr15 18224780 18225079 -83155442 - AluSx SINE Alu -13 299 1 2401 92 0 0 chr15 18225448 18225752 -83154769 - AluSg SINE Alu -2 308 5 2213 262 96 10 chr15 18225766 18226541 -83153980 - L1ME1 LINE L1 -3 6163 5323 630 171 49 0 chr15 18226617 18226740 -83153781 - LTR53 LTR ERVL -40 479 351 26 30 0 0 chr15 18227066 18227099 -83153422 + AT_rich Low_complexity Low_complexity 1 33 0 2704 160 86 0 chr15 18227099 18227623 -83152898 - L1MB3 LINE L1 -8 6175 5607 2167 92 7 3 chr15 18227629 18227921 -83152600 - AluY SINE Alu -18 293 1 909 157 0 0 chr15 18227963 18228097 -83152424 - FRAM SINE Alu -25 151 18 657 218 46 6 chr15 18228972 18229146 -83151375 + L1ME2 LINE L1 5982 6162 -2 2220 110 3 0 chr15 18229166 18229466 -83151055 + AluSx SINE Alu 1 301 -11 874 160 17 66 chr15 18230106 18230287 -83150234 - AluSg/x SINE Alu -13 299 128 351 280 0 24 chr15 18230631 18230756 -83149765 + CT-rich Low_complexity Low_complexity 3 124 0 507 291 0 7 chr15 18230790 18231461 -83149060 + CT-rich Low_complexity Low_complexity 1 666 0 277 325 195 0 chr15 18232115 18232238 -83148283 - MIR3 SINE MIR -9 199 53 1344 97 0 0 chr15 18232578 18232754 -83147767 - AluSp SINE Alu -2 311 136 536 254 179 20 chr15 18232889 18233090 -83147431 - MIR SINE MIR -10 252 20 363 44 0 0 chr15 18233284 18233329 -83147192 + (CA)n Simple_repeat Simple_repeat 2 46 0 252 154 39 0 chr15 18233333 18233385 -83147136 - L1MC4a LINE L1 -1870 5938 5885 269 265 68 26 chr15 18234718 18234835 -83145686 - L2 LINE L2 -5 3308 3187 196 282 176 0 chr15 18234832 18234917 -83145604 - MIR3 SINE MIR 0 208 109 * 2034 109 13 33 chr15 18235276 18235579 -83144942 + AluSx SINE Alu 3 299 -13 576 204 138 13 chr15 18235732 18235884 -83144637 + MIR SINE MIR 28 198 -64 26 30 0 0 chr15 18235927 18235960 -83144561 + AT_rich Low_complexity Low_complexity 1 33 0 1735 153 19 16 chr15 18238986 18239294 -83141227 + L1MB7 LINE L1 5876 6184 0 887 168 14 0 chr15 18239777 18239955 -83140566 + AluJb SINE Alu 138 317 0 1870 195 23 21 chr15 18239955 18240340 -83140181 + L1MB2 LINE L1 5778 6163 -8 1642 216 90 38 chr15 18240939 18241383 -83139138 - MLT1D LTR MaLR 0 505 39 1182 117 6 0 chr15 18241386 18241557 -83138964 - L1PA11 LINE L1 -232 5942 5771 1633 218 128 2 chr15 18241557 18241970 -83138551 - MLT2B1 LTR ERVL -55 465 1 372 97 194 0 chr15 18241971 18242043 -83138478 + AluJb SINE Alu 24 109 -193 1739 145 30 13 chr15 18242045 18242349 -83138172 - AluSp SINE Alu -3 310 2 685 131 9 9 chr15 18242379 18242486 -83138035 + AluJb SINE Alu 2 108 -204 1761 147 13 19 chr15 18242492 18242805 -83137716 - AluSp SINE Alu -2 311 1 815 133 23 0 chr15 18242810 18242938 -83137583 - AluSp SINE Alu -180 133 3 616 179 18 9 chr15 18242969 18243081 -83137440 + AluJb SINE Alu 2 114 -198 1749 144 13 16 chr15 18243081 18243387 -83137134 - AluSp SINE Alu -4 309 5 1406 155 12 81 chr15 18243421 18243538 -83136983 + AluJo SINE Alu 1 124 -188 1688 116 23 76 chr15 18243538 18243840 -83136681 - AluSp SINE Alu -26 287 2 1406 155 12 81 chr15 18243840 18244057 -83136464 + AluJo SINE Alu 124 312 0 185 232 143 0 chr15 18244316 18244372 -83136149 - MIR SINE MIR -93 169 106 24 67 0 0 chr15 18245499 18245544 -83134977 + AT_rich Low_complexity Low_complexity 1 45 0 28 0 0 0 chr15 18245800 18245828 -83134693 + AT_rich Low_complexity Low_complexity 1 28 0 205 180 49 0 chr15 18246105 18246166 -83134355 + (TTA)n Simple_repeat Simple_repeat 3 66 0 306 125 0 0 chr15 18246687 18246735 -83133786 + (A)n Simple_repeat Simple_repeat 1 48 0 2182 102 0 30 chr15 18246739 18247042 -83133479 + AluY SINE Alu 5 298 -13 420 20 0 0 chr15 18247305 18247354 -83133167 + (TA)n Simple_repeat Simple_repeat 1 49 0 993 220 114 32 chr15 18248048 18248425 -83132096 - LTR37A LTR ERV1 0 426 19 218 122 0 41 chr15 18248704 18248753 -83131768 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 2376 71 0 19 chr15 18250003 18250313 -83130208 + AluY SINE Alu 1 304 -7 2079 137 0 0 chr15 18250666 18250973 -83129548 - AluSx SINE Alu -5 307 1 234 225 122 27 chr15 18251028 18251161 -83129360 - MIR SINE MIR -59 203 52 21 36 0 0 chr15 18252185 18252213 -83128308 + AT_rich Low_complexity Low_complexity 1 28 0 664 256 84 9 chr15 18252314 18252529 -83127992 - L1ME3 LINE L1 -199 5963 5733 244 263 62 0 chr15 18252532 18252612 -83127909 - L1ME3 LINE L1 -536 5634 5550 2599 56 0 0 chr15 18252761 18253063 -83127458 + AluY SINE Alu 1 302 -9 484 272 35 99 chr15 18254168 18254254 -83126267 - MIR SINE MIR -49 213 123 1703 113 4 0 chr15 18254254 18254484 -83126037 - AluSx SINE Alu -24 288 58 484 272 35 99 chr15 18254484 18254599 -83125922 - MIR SINE MIR -139 123 25 196 313 164 36 chr15 18254975 18255170 -83125351 - L2 LINE L2 -8 3264 3045 1807 102 82 0 chr15 18255357 18255613 -83124908 + AluSq SINE Alu 35 311 -2 181 348 58 29 chr15 18255619 18255757 -83124764 - L2 LINE L2 -401 2913 2772 298 215 31 0 chr15 18255767 18255832 -83124689 - MLT1K LTR MaLR -39 549 483 251 364 0 68 chr15 18256067 18256199 -83124322 + MIR SINE MIR 24 146 -62 2420 78 0 0 chr15 18256229 18256523 -83123998 - AluY SINE Alu -17 294 1 452 194 21 0 chr15 18257121 18257214 -83123307 - MER103 DNA DNA -21 145 51 300 275 18 37 chr15 18257260 18257369 -83123152 + MER5C DNA MER1_type 18 124 -200 1416 140 189 53 chr15 18257831 18258075 -83122446 + MER47A DNA MER2_type 1 210 -2113 207 0 0 0 chr15 18258075 18258098 -83122423 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2140 108 3 7 chr15 18258102 18258390 -83122131 - AluSq SINE Alu -26 287 1 1416 140 189 53 chr15 18258390 18258462 -83122059 + MER47A DNA MER2_type 212 366 0 2300 67 37 3 chr15 18259262 18259559 -83120962 - AluY SINE Alu 0 311 5 318 148 0 0 chr15 18259563 18259617 -83120904 + (T)n Simple_repeat Simple_repeat 1 54 0 351 0 0 0 chr15 18260864 18260903 -83119618 + (TG)n Simple_repeat Simple_repeat 2 40 0 243 224 0 0 chr15 18260915 18260964 -83119557 + MIR SINE MIR 184 232 -30 1009 249 127 31 chr15 18260994 18261507 -83119014 - HAL1 LINE L1 -877 1630 1069 562 240 122 91 chr15 18261508 18261983 -83118538 - MLT1H1 LTR MaLR 0 555 66 291 242 121 25 chr15 18262050 18262248 -83118273 - HAL1 LINE L1 -1437 1070 854 2305 117 0 0 chr15 18262266 18262574 -83117947 - AluSp SINE Alu -5 308 1 1937 141 19 29 chr15 18262638 18262951 -83117570 + AluJo SINE Alu 1 310 -2 419 297 90 62 chr15 18263232 18263522 -83116999 - HAL1 LINE L1 -2167 340 43 1037 203 37 28 chr15 18263906 18264123 -83116398 + MER20 DNA MER1_type 1 219 0 2466 59 7 13 chr15 18264254 18264559 -83115962 + AluY SINE Alu 1 303 -8 400 276 168 41 chr15 18264660 18264975 -83115546 - L1M4 LINE L1 -2884 3262 2908 33 0 0 0 chr15 18264990 18265023 -83115498 + AT_rich Low_complexity Low_complexity 1 33 0 2030 125 7 0 chr15 18265038 18265318 -83115203 - AluY SINE Alu -29 282 1 211 259 0 19 chr15 18265637 18265691 -83114830 + (CA)n Simple_repeat Simple_repeat 2 54 0 345 269 62 46 chr15 18267983 18268002 -83112519 + MIR SINE MIR 16 33 -229 2272 97 7 3 chr15 18268002 18268300 -83112221 + AluY SINE Alu 1 299 -12 345 269 62 46 chr15 18268300 18268410 -83112111 + MIR SINE MIR 33 147 -115 281 336 131 0 chr15 18269388 18269525 -83110996 + MIR3 SINE MIR 31 185 -23 304 278 70 17 chr15 18269545 18269660 -83110861 + L2 LINE L2 3188 3308 -5 239 173 27 80 chr15 18270936 18270989 -83109532 + L1MC4a LINE L1 5885 5934 -1874 282 56 0 0 chr15 18270989 18271025 -83109496 + (TG)n Simple_repeat Simple_repeat 2 37 0 239 173 27 80 chr15 18271025 18271046 -83109475 + L1MC4a LINE L1 5934 5955 -1853 220 216 39 0 chr15 18272240 18272291 -83108230 + MIR SINE MIR 95 147 -61 1871 141 0 54 chr15 18273325 18273638 -83106883 + AluSx SINE Alu 2 297 -15 252 238 197 8 chr15 18273655 18273777 -83106744 + MIR SINE MIR 48 192 -70 934 163 0 18 chr15 18274483 18274649 -83105872 + 7SLRNA srpRNA srpRNA 95 257 -63 261 57 0 0 chr15 18275774 18275809 -83104712 + (TGGGGG)n Simple_repeat Simple_repeat 6 40 0 189 0 0 0 chr15 18278293 18278314 -83102207 + (A)n Simple_repeat Simple_repeat 1 21 0 237 213 0 0 chr15 18278314 18278361 -83102160 + L2 LINE L2 3263 3309 -4 23 0 0 0 chr15 18278879 18278902 -83101619 + AT_rich Low_complexity Low_complexity 1 23 0 712 273 42 118 chr15 18279348 18279748 -83100773 + LTR16A LTR ERVL 68 437 -13 852 134 0 24 chr15 18279963 18280090 -83100431 + FLAM_C SINE Alu 1 124 -9 1948 112 0 0 chr15 18281102 18281360 -83099161 + AluSx SINE Alu 45 302 -10 237 366 30 22 chr15 18281555 18281689 -83098832 - L2 LINE L2 -2516 798 664 528 262 94 20 chr15 18282114 18282316 -83098205 - MIR SINE MIR -30 232 16 3499 97 15 0 chr15 18282557 18283022 -83097499 - L1PA10 LINE L1 -1 6167 5696 1310 77 0 0 chr15 18283027 18283197 -83097324 + L1PA10 LINE L1 5517 5686 -482 2517 60 0 0 chr15 18284646 18284945 -83095576 - AluY SINE Alu -12 299 1 244 300 225 0 chr15 18285475 18285595 -83094926 - MIR SINE MIR 0 262 116 245 208 21 0 chr15 18285949 18286045 -83094476 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 5168 126 22 19 chr15 18286655 18287432 -83093089 - MER4E LTR ERV1 0 779 1 24 0 0 0 chr15 18287673 18287697 -83092824 + AT_rich Low_complexity Low_complexity 1 24 0 2516 75 0 0 chr15 18287723 18288031 -83092490 + AluY SINE Alu 1 308 -3 1643 97 20 16 chr15 18289984 18290231 -83090290 - THE1C LTR MaLR -127 248 1 1581 154 68 7 chr15 18291104 18291383 -83089138 + AluSx SINE Alu 1 296 -16 2097 137 3 0 chr15 18291388 18291695 -83088826 + AluSg SINE Alu 1 308 -2 41 98 0 0 chr15 18291712 18291844 -83088677 + AT_rich Low_complexity Low_complexity 1 132 0 24 77 0 0 chr15 18291892 18291944 -83088577 + AT_rich Low_complexity Low_complexity 1 52 0 2026 93 31 10 chr15 18292101 18292392 -83088129 - AluY SINE Alu -14 297 1 2054 97 24 7 chr15 18292395 18292683 -83087838 - AluSc SINE Alu -16 293 1 2475 40 0 13 chr15 18293333 18293635 -83086886 - AluY SINE Alu -13 298 1 1161 239 122 29 chr15 18293648 18294066 -83086455 - MLT1E2 LTR MaLR -169 457 1 223 283 25 82 chr15 18294128 18294287 -83086234 - L2 LINE L2 -991 2323 2174 237 132 0 0 chr15 18294491 18294529 -83085992 + (CACG)n Simple_repeat Simple_repeat 1 38 0 309 211 13 0 chr15 18294530 18294606 -83085915 + MLT1D LTR MaLR 429 505 0 3770 200 61 11 chr15 18294644 18295449 -83085072 + L1MB7 LINE L1 4735 5636 -548 2027 118 0 0 chr15 18295449 18295728 -83084793 + AluSx SINE Alu 34 312 0 3770 200 61 11 chr15 18295728 18296286 -83084235 + L1MB7 LINE L1 5636 6165 -19 337 283 261 11 chr15 18296318 18296771 -83083750 + L1M4 LINE L1 3826 4391 -1755 209 200 0 0 chr15 18297369 18297409 -83083112 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 424 171 68 0 chr15 18298610 18298698 -83081823 + MSTC LTR MaLR 1 94 -334 227 300 50 40 chr15 18298844 18298944 -83081577 - L2 LINE L2 -3 3269 3169 2286 74 7 7 chr15 18300007 18300303 -83080218 + AluY SINE Alu 1 296 -15 2284 72 10 7 chr15 18300316 18300609 -83079912 + AluY SINE Alu 2 295 -16 540 218 142 58 chr15 18300610 18300835 -83079686 - L1MC4a LINE L1 -1520 6288 6045 1845 208 42 17 chr15 18300980 18301336 -83079185 - MLT1A1 LTR MaLR 0 365 1 2868 105 0 5 chr15 18301630 18302021 -83078500 - MER1A DNA MER1_type 0 529 141 21 36 0 0 chr15 18304503 18304531 -83075990 + AT_rich Low_complexity Low_complexity 1 28 0 36 62 0 0 chr15 18304987 18305051 -83075470 + AT_rich Low_complexity Low_complexity 1 64 0 1513 115 5 0 chr15 18305219 18305427 -83075094 + AluSc SINE Alu 84 292 -17 22 0 0 0 chr15 18305700 18305722 -83074799 + AT_rich Low_complexity Low_complexity 1 22 0 2381 109 0 0 chr15 18305755 18306066 -83074455 - AluSx SINE Alu -1 311 1 482 270 138 6 chr15 18306099 18306258 -83074263 - L1MD3 LINE L1 -1153 6842 6663 2115 134 3 6 chr15 18306350 18306663 -83073858 - AluSx SINE Alu 0 312 1 436 314 147 17 chr15 18306852 18307116 -83073405 - L1MC4a LINE L1 -1561 6247 5926 1961 133 3 7 chr15 18307116 18307424 -83073097 - AluSq SINE Alu -6 307 1 436 314 147 17 chr15 18307424 18307506 -83073015 - L1MC4a LINE L1 -1882 5926 5856 28 0 0 0 chr15 18308442 18308470 -83072051 + AT_rich Low_complexity Low_complexity 1 28 0 342 0 0 0 chr15 18308483 18308521 -83072000 + (CA)n Simple_repeat Simple_repeat 1 38 0 854 223 118 28 chr15 18308674 18308961 -83071560 - L1ME2 LINE L1 -1 6163 5851 1932 140 13 13 chr15 18310025 18310325 -83070196 - AluSg1 SINE Alu -9 300 1 972 209 42 35 chr15 18310556 18310815 -83069706 - MER58B DNA MER1_type -1 340 80 1627 87 8 75 chr15 18310821 18311073 -83069448 + AluSx SINE Alu 1 235 -77 233 269 0 0 chr15 18311118 18311170 -83069351 - MER58B DNA MER1_type -277 64 13 297 0 0 0 chr15 18311176 18311209 -83069312 + (CA)n Simple_repeat Simple_repeat 1 33 0 812 209 65 13 chr15 18311319 18311549 -83068972 - L1ME2 LINE L1 -2221 5564 5323 2027 169 120 2 chr15 18311622 18312047 -83068474 - LTR53 LTR ERVL -40 479 5 588 246 17 17 chr15 18312092 18312271 -83068250 - L1MDa LINE L1 -4821 1719 1541 458 226 73 7 chr15 18312278 18312415 -83068106 + MER21B LTR ERV1 661 806 -57 2430 86 0 0 chr15 18312988 18313289 -83067232 - AluY SINE Alu -10 301 1 25 31 0 0 chr15 18313701 18313733 -83066788 + AT_rich Low_complexity Low_complexity 1 32 0 660 137 0 0 chr15 18313733 18313835 -83066686 - L1MB3 LINE L1 -8 6175 6074 648 237 0 0 chr15 18313845 18313963 -83066558 - FLAM_C SINE Alu -24 119 2 1532 155 43 18 chr15 18313964 18314242 -83066279 - L1MB3 LINE L1 -572 5608 5324 2193 110 3 13 chr15 18314243 18314551 -83065970 - AluSq SINE Alu -8 305 1 1333 108 0 0 chr15 18314560 18314736 -83065785 - AluY SINE Alu -5 306 131 867 184 0 13 chr15 18315112 18315264 -83065257 + FRAM SINE Alu 6 155 -21 262 350 34 0 chr15 18315272 18315389 -83065132 + MIR SINE MIR 141 261 -1 2137 203 69 19 chr15 18315412 18315978 -83064543 - L1MEc LINE L1 -2870 3345 2752 1263 126 0 0 chr15 18315978 18316145 -83064376 + AluSq SINE Alu 1 167 -146 416 172 0 0 chr15 18316145 18316209 -83064312 + AluS SINE Alu 233 296 -15 755 258 144 25 chr15 18316902 18317270 -83063251 - L1MEc LINE L1 -3589 2626 2215 355 302 42 28 chr15 18317279 18317491 -83063030 - L1MEc LINE L1 -4332 2064 1850 2025 118 0 36 chr15 18317524 18317829 -83062692 - AluSq SINE Alu -19 294 1 1882 96 15 33 chr15 18317831 18318103 -83062418 - AluSp SINE Alu -13 300 34 2299 101 7 3 chr15 18318358 18318664 -83061857 + AluY SINE Alu 1 307 -4 325 285 89 0 chr15 18318697 18318820 -83061701 + MIR SINE MIR 129 262 0 4383 221 54 54 chr15 18319733 18321435 -83059086 - L1MDa LINE L1 -2118 4422 2722 2129 110 27 7 chr15 18321435 18321727 -83058794 - AluSq SINE Alu -15 298 1 4383 221 54 54 chr15 18321727 18322160 -83058361 - L1MDa LINE L1 -3818 2722 2291 1638 161 83 9 chr15 18322160 18322496 -83058025 + MER46B DNA MER2_type 1 236 0 4383 221 54 54 chr15 18322496 18323305 -83057216 - L1MDa LINE L1 -4249 2291 1483 192 40 0 0 chr15 18323305 18323330 -83057191 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 369 149 0 0 chr15 18323352 18323419 -83057102 + (TCCCG)n Simple_repeat Simple_repeat 4 70 0 1856 146 4 0 chr15 18323421 18323696 -83056825 - AluSg SINE Alu -34 276 1 315 217 80 51 chr15 18325190 18325365 -83055156 - L1MC4a LINE L1 -1926 5882 5703 2371 89 0 3 chr15 18325367 18325670 -83054851 + AluSq SINE Alu 1 302 -11 990 61 0 0 chr15 18326045 18326159 -83054362 - AluY SINE Alu -197 114 1 540 295 70 44 chr15 18326162 18326616 -83053905 - L1MC5 LINE L1 -179 7782 7317 365 214 32 97 chr15 18326784 18326938 -83053583 - L1MC5 LINE L1 -861 7100 6957 526 231 35 35 chr15 18326992 18327195 -83053326 - L1M4 LINE L1 -3097 3049 2847 352 267 22 0 chr15 18327263 18327353 -83053168 - L1M4 LINE L1 -3327 2819 2728 1978 163 0 0 chr15 18329458 18329747 -83050774 + AluJb SINE Alu 1 289 -23 2345 92 7 0 chr15 18329756 18330051 -83050470 + AluSq SINE Alu 1 297 -16 207 367 61 0 chr15 18330487 18330585 -83049936 - L2 LINE L2 -1 3271 3168 2385 85 3 0 chr15 18333852 18334146 -83046375 - AluSc SINE Alu -14 295 1 2029 219 75 39 chr15 18334609 18335193 -83045328 - MER77 LTR ERV1 0 605 1 1029 254 53 22 chr15 18335347 18335670 -83044851 + MER58B DNA MER1_type 4 336 -5 22 0 0 0 chr15 18335840 18335862 -83044659 + AT_rich Low_complexity Low_complexity 1 22 0 3830 192 62 59 chr15 18338292 18339108 -83041413 - L1MB5 LINE L1 0 6174 5361 2365 106 0 0 chr15 18339108 18339419 -83041102 - AluSx SINE Alu -1 311 1 3830 192 62 59 chr15 18339419 18340312 -83040209 - L1MB5 LINE L1 -813 5361 4457 1604 216 71 21 chr15 18340317 18340458 -83040063 - L1MB5 LINE L1 -2486 3660 3527 2445 73 0 0 chr15 18340458 18340758 -83039763 - AluY SINE Alu -11 300 1 1604 216 71 21 chr15 18340758 18340999 -83039522 - L1MB5 LINE L1 -2619 3527 3243 2243 115 0 13 chr15 18340999 18341312 -83039209 - AluSc SINE Alu 0 309 1 1604 216 71 21 chr15 18341312 18341451 -83039070 - L1MB5 LINE L1 -2903 3243 3112 984 199 0 5 chr15 18341456 18341652 -83038869 - AluJb SINE Alu 0 312 118 1446 227 56 13 chr15 18341652 18342114 -83038407 - L1MB5 LINE L1 -3052 3094 2613 1633 148 0 44 chr15 18342247 18342518 -83038003 + AluJb SINE Alu 23 281 -31 198 128 0 0 chr15 18342533 18342572 -83037949 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 210 183 56 0 chr15 18342573 18342644 -83037877 + (TA)n Simple_repeat Simple_repeat 1 75 0 1890 265 50 47 chr15 18342650 18343617 -83036904 - HERVL68 LTR ERVL -1920 1117 60 2293 176 109 0 chr15 18343625 18344130 -83036391 - MER68 LTR ERV1 -2 560 1 1485 170 80 43 chr15 18347321 18347733 -83032788 - MLT1C LTR MaLR 0 467 1 855 239 128 51 chr15 18347734 18348123 -83032398 - MLT1C LTR MaLR -46 421 3 347 316 6 0 chr15 18348952 18349123 -83031398 + (TG)n Simple_repeat Simple_repeat 1 172 0 779 141 0 0 chr15 18349600 18349721 -83030800 + FLAM_A SINE Alu 20 140 -2 2235 108 0 13 chr15 18350550 18350856 -83029665 + AluSg SINE Alu 1 302 -8 2256 86 7 13 chr15 18352432 18352736 -83027785 - AluSx SINE Alu -10 302 1 312 258 10 0 chr15 18354901 18355000 -83025521 + MER5A DNA MER1_type 10 98 -80 2385 88 0 0 chr15 18355234 18355531 -83024990 + AluY SINE Alu 3 299 -12 918 135 0 81 chr15 18355531 18355716 -83024805 + AluSg/x SINE Alu 134 303 -9 1003 197 170 3 chr15 18355860 18356012 -83024509 + MER2 DNA MER2_type 2 127 -217 2584 74 0 0 chr15 18356012 18356323 -83024198 + AluY SINE Alu 1 311 0 1003 197 170 3 chr15 18356323 18356464 -83024057 + MER2 DNA MER2_type 127 344 0 281 119 174 55 chr15 18356566 18356675 -83023846 + L1ME4a LINE L1 5999 6120 -1 929 178 40 0 chr15 18357723 18357897 -83022624 + MER58A DNA MER1_type 44 224 0 1771 128 33 56 chr15 18358222 18358526 -83021995 + AluSg SINE Alu 1 297 -13 1954 147 0 20 chr15 18358755 18359055 -83021466 - AluSx SINE Alu -18 294 1 192 97 0 0 chr15 18361073 18361104 -83019417 + (TG)n Simple_repeat Simple_repeat 2 32 0 2547 70 0 0 chr15 18361361 18361662 -83018859 + AluY SINE Alu 1 301 -10 814 219 39 2 chr15 18362333 18362539 -83017982 - MIR SINE MIR -21 241 31 2093 125 3 0 chr15 18362541 18362838 -83017683 - AluSx SINE Alu -14 298 1 191 105 53 0 chr15 18363720 18363758 -83016763 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 1678 142 9 89 chr15 18363758 18364095 -83016426 - AluJo SINE Alu -2 310 1 2802 193 78 70 chr15 18364103 18364985 -83015536 - L1ME1 LINE L1 -65 6101 5223 2588 122 32 32 chr15 18364985 18365418 -83015103 - Tigger2a DNA MER2_type -1 433 1 2802 193 78 70 chr15 18365418 18365455 -83015066 - L1ME1 LINE L1 -943 5223 5188 2158 119 3 0 chr15 18365986 18366281 -83014240 - AluSx SINE Alu -11 301 6 381 255 7 0 chr15 18367123 18367264 -83013257 - L1MEd LINE L1 -5279 840 699 934 218 84 4 chr15 18367287 18367512 -83013009 - L1MD3 LINE L1 -24 7971 7729 385 248 35 0 chr15 18367510 18367623 -83012898 - L1MEd LINE L1 -5405 714 598 * 302 274 38 17 chr15 18368029 18368206 -83012315 + MER58C DNA MER1_type 9 206 -9 1957 170 0 0 chr15 18369114 18369420 -83011101 - AluJb SINE Alu -6 306 1 280 399 51 22 chr15 18370985 18371123 -83009398 - L2 LINE L2 -22 3250 3109 182 214 125 18 chr15 18371424 18371480 -83009041 - L2 LINE L2 0 3272 3211 342 288 36 36 chr15 18372448 18372559 -83007962 + MER91A DNA MER1_type 66 176 -20 210 288 51 0 chr15 18372803 18372862 -83007659 - L2 LINE L2 0 3272 3211 2272 93 0 32 chr15 18373030 18373342 -83007179 - AluSc SINE Alu -7 302 1 969 197 81 102 chr15 18373418 18373753 -83006768 + MER58B DNA MER1_type 4 331 -10 442 290 92 22 chr15 18373766 18374007 -83006514 + L2 LINE L2 2770 3037 -276 450 319 81 0 chr15 18374726 18374886 -83005635 - MIR SINE MIR -17 245 73 405 248 335 9 chr15 18374959 18375177 -83005344 - L1MC4a LINE L1 -1547 6261 5973 409 202 29 0 chr15 18375260 18375364 -83005157 - L1MC4a LINE L1 -1853 5955 5849 210 191 29 15 chr15 18375558 18375626 -83004895 + CT-rich Low_complexity Low_complexity 4 72 0 1660 166 59 10 chr15 18376143 18376433 -83004088 - AluJb SINE Alu -8 304 1 248 295 27 27 chr15 18376516 18376628 -83003893 + (TCTCTG)n Simple_repeat Simple_repeat 2 113 0 671 298 55 35 chr15 18376706 18376961 -83003560 + MIR SINE MIR 3 262 0 2559 52 0 0 chr15 18377602 18377907 -83002614 - AluY SINE Alu -5 306 2 190 367 18 28 chr15 18378849 18378958 -83001563 - L2 LINE L2 -222 3050 2943 6939 31 1 3 chr15 18379502 18380376 -83000145 - L1PA4 LINE L1 0 6155 5284 22 0 0 0 chr15 18380615 18380637 -82999884 + AT_rich Low_complexity Low_complexity 1 22 0 378 323 109 19 chr15 18380638 18380895 -82999626 + L1MC/D LINE L1 4567 4846 -1300 427 255 83 23 chr15 18381220 18381436 -82999085 + L1MC/D LINE L1 5254 5482 -2326 259 244 126 0 chr15 18381759 18381894 -82998627 + MER103 DNA DNA 13 164 -2 223 191 24 0 chr15 18382673 18382715 -82997806 + (TATG)n Simple_repeat Simple_repeat 4 46 0 410 303 98 101 chr15 18382916 18383628 -82996893 - L1M2 LINE L1 -5760 1089 493 26 30 0 0 chr15 18384873 18384906 -82995615 + AT_rich Low_complexity Low_complexity 1 33 0 2104 92 10 0 chr15 18385474 18385768 -82994753 - AluY SINE Alu -14 297 1 2278 92 3 0 chr15 18385941 18386234 -82994287 - AluSp SINE Alu -19 294 1 300 246 27 45 chr15 18386242 18386352 -82994169 - L1MC4a LINE L1 -271 5850 5743 24 0 0 0 chr15 18386679 18386703 -82993818 + AT_rich Low_complexity Low_complexity 1 24 0 654 216 8 8 chr15 18386805 18386930 -82993591 - FLAM_C SINE Alu -16 127 3 21 36 0 0 chr15 18386942 18386970 -82993551 + AT_rich Low_complexity Low_complexity 1 28 0 2105 121 17 10 chr15 18387060 18387358 -82993163 - AluSx SINE Alu -12 300 1 2304 92 0 19 chr15 18387847 18388162 -82992359 - AluSp SINE Alu -4 309 1 353 253 0 53 chr15 18388215 18388310 -82992211 + L1MC4 LINE L1 6614 6703 -1339 316 245 0 43 chr15 18388312 18388406 -82992115 - L1MC4 LINE L1 -1339 6703 6614 * 353 211 16 29 chr15 18388402 18388505 -82992016 + L1MC4 LINE L1 1995 6983 -1339 341 229 21 31 chr15 18388471 18388567 -82991954 - L1MC4 LINE L1 -1339 6703 6609 * 3202 163 94 0 chr15 18388585 18389246 -82991275 - L1MB7 LINE L1 -58 6126 5404 1818 149 28 33 chr15 18389308 18389670 -82990851 - MLT1A1 LTR MaLR 0 365 6 180 243 108 40 chr15 18389750 18389824 -82990697 - MIR SINE MIR 0 262 184 420 322 47 58 chr15 18390344 18390858 -82989663 - L2 LINE L2 -5 3267 2766 561 322 104 13 chr15 18390864 18391240 -82989281 + L1ME4a LINE L1 5709 6118 -3 23 0 0 0 chr15 18391344 18391367 -82989154 + AT_rich Low_complexity Low_complexity 1 23 0 2471 71 0 0 chr15 18391589 18391898 -82988623 - AluY SINE Alu -2 309 1 1325 135 70 4 chr15 18391917 18392147 -82988374 - L1PB4 LINE L1 -7 6149 5905 1563 183 8 80 chr15 18392475 18392875 -82987646 - MLT1A2 LTR MaLR 0 374 4 2080 98 0 86 chr15 18393494 18393821 -82986700 + AluSx SINE Alu 1 299 -13 535 138 0 0 chr15 18393944 18394031 -82986490 - L1MA3 LINE L1 0 6305 6219 421 275 219 0 chr15 18394092 18394270 -82986251 - L1ME LINE L1 -303 5818 5602 2363 98 0 3 chr15 18394404 18394710 -82985811 + AluSx SINE Alu 1 305 -7 775 269 142 19 chr15 18394715 18395651 -82984870 - L1ME LINE L1 -746 5400 4487 296 186 100 0 chr15 18395991 18396061 -82984460 + L1ME4a LINE L1 5527 5603 -518 276 221 235 0 chr15 18396071 18396207 -82984314 + L1ME4a LINE L1 5651 5818 -303 2209 109 3 6 chr15 18396207 18396518 -82984003 - AluSx SINE Alu -2 310 1 237 275 7 14 chr15 18396606 18396748 -82983773 + (TA)n Simple_repeat Simple_repeat 1 141 0 256 154 77 0 chr15 18396758 18396810 -82983711 + L1ME4a LINE L1 5994 6049 -72 21 82 0 0 chr15 18396812 18396861 -82983660 + AT_rich Low_complexity Low_complexity 1 49 0 29 47 0 0 chr15 18397212 18397255 -82983266 + AT_rich Low_complexity Low_complexity 1 43 0 236 216 0 20 chr15 18397294 18397345 -82983176 - L2 LINE L2 0 3313 3264 2156 124 0 0 chr15 18397345 18397643 -82982878 - AluSx SINE Alu -12 300 3 2151 132 0 0 chr15 18397921 18398225 -82982296 - AluSx SINE Alu -8 304 1 1469 173 118 7 chr15 18398334 18398606 -82981915 + AluJb SINE Alu 1 302 0 399 262 85 50 chr15 18398969 18399110 -82981411 + MIR SINE MIR 6 151 -111 1122 69 0 21 chr15 18399120 18399264 -82981257 + AluSq SINE Alu 153 293 -20 794 74 57 0 chr15 18400942 18401064 -82979457 - L1MA5 LINE L1 0 6300 6172 1253 144 0 0 chr15 18401102 18401283 -82979238 + AluJb SINE Alu 1 181 -131 1243 251 80 43 chr15 18401288 18402000 -82978521 - L1ME LINE L1 -1695 4451 3714 3518 104 28 4 chr15 18402209 18402708 -82977813 - MER9 LTR ERVK 0 511 1 23 0 0 0 chr15 18402993 18403016 -82977505 + AT_rich Low_complexity Low_complexity 1 23 0 2478 115 3 16 chr15 18403148 18403514 -82977007 - THE1B LTR MaLR -2 362 2 1265 181 96 22 chr15 18404121 18404392 -82976129 - AluJo SINE Alu -17 295 5 183 42 0 0 chr15 18406130 18406154 -82974367 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2202 77 18 3 chr15 18406682 18406968 -82973553 + AluY SINE Alu 1 290 -21 1091 133 0 76 chr15 18407261 18407471 -82973050 + AluSq SINE Alu 1 194 -119 2448 44 7 3 chr15 18408539 18408835 -82971686 - AluY SINE Alu -14 297 1 760 248 136 76 chr15 18410479 18410950 -82969571 + MLT1F1 LTR MaLR 67 565 -2 212 222 0 16 chr15 18411118 18411181 -82969340 + GA-rich Low_complexity Low_complexity 1 62 0 180 325 38 25 chr15 18411243 18411323 -82969198 - L2 LINE L2 0 3272 3192 637 246 182 0 chr15 18411746 18411933 -82968588 + MER58A DNA MER1_type 4 224 0 2273 109 3 0 chr15 18413838 18414142 -82966379 + AluSc SINE Alu 3 307 -2 374 278 94 11 chr15 18415161 18415352 -82965169 + L1ME3 LINE L1 774 980 -5090 349 312 136 4 chr15 18415445 18415916 -82964605 + L1ME3 LINE L1 1113 1645 -4616 276 266 43 60 chr15 18415961 18416243 -82964278 + L1ME3 LINE L1 3383 3659 -2421 26 50 0 0 chr15 18416530 18416570 -82963951 + AT_rich Low_complexity Low_complexity 1 40 0 2104 102 30 13 chr15 18416578 18416882 -82963639 + AluSg SINE Alu 1 309 -1 1548 262 50 56 chr15 18416980 18417523 -82962998 + L1ME3 LINE L1 5438 5978 -118 2265 111 0 0 chr15 18417523 18417820 -82962701 - AluSq SINE Alu -16 297 1 1548 262 50 56 chr15 18417820 18417939 -82962582 + L1ME3 LINE L1 5978 6096 0 522 266 92 14 chr15 18417974 18418192 -82962329 + L1ME3 LINE L1 5603 5837 -325 312 293 146 15 chr15 18418208 18418417 -82962104 + L1ME3 LINE L1 5910 6145 -19 1959 213 30 34 chr15 18418417 18418886 -82961635 - MLT1C LTR MaLR 0 467 1 312 293 146 15 chr15 18418886 18418908 -82961613 + L1ME3 LINE L1 6145 6163 -1 21 0 0 0 chr15 18419491 18419512 -82961009 + AT_rich Low_complexity Low_complexity 1 21 0 2580 68 0 0 chr15 18419525 18419835 -82960686 - AluY SINE Alu -1 310 1 2173 94 0 13 chr15 18420569 18420876 -82959645 + AluY SINE Alu 1 303 -8 2389 52 0 23 chr15 18421510 18421818 -82958703 - AluY SINE Alu -10 301 1 1906 63 20 4 chr15 18422743 18422995 -82957526 - AluY SINE Alu -10 301 46 1036 183 0 0 chr15 18424928 18425103 -82955418 - FRAM SINE Alu -2 174 1 1372 156 5 0 chr15 18425209 18425414 -82955107 + L1MC1 LINE L1 6122 6327 -6 1984 36 0 59 chr15 18426054 18426307 -82954214 - AluY SINE Alu -14 297 60 331 179 0 0 chr15 18426916 18426972 -82953549 + FLAM_A SINE Alu 58 113 -20 833 172 32 0 chr15 18426975 18427132 -82953389 - AluSq SINE Alu -20 293 132 1602 176 37 7 chr15 18427132 18427427 -82953094 + LTR15 LTR ERV1 184 487 -6 770 181 126 85 chr15 18427493 18427608 -82952913 + AluJb SINE Alu 2 111 -201 1517 157 13 47 chr15 18427608 18427908 -82952613 - AluSp SINE Alu -17 296 7 770 181 126 85 chr15 18427908 18428062 -82952459 + AluJb SINE Alu 111 282 -30 818 109 0 23 chr15 18428074 18428202 -82952319 - AluSp SINE Alu -188 125 1 541 184 74 84 chr15 18428231 18428350 -82952171 + AluJb SINE Alu 2 120 -192 1423 142 13 58 chr15 18428350 18428661 -82951860 - AluSp SINE Alu -16 297 1 541 184 74 84 chr15 18428661 18428731 -82951790 + AluJb SINE Alu 120 189 -123 1559 152 17 20 chr15 18428749 18429046 -82951475 - AluSp SINE Alu -17 296 1 885 84 15 0 chr15 18429054 18429185 -82951336 - AluSp SINE Alu -180 133 1 576 181 9 9 chr15 18429214 18429330 -82951191 + AluJb SINE Alu 2 117 -195 1677 132 9 60 chr15 18429331 18429649 -82950872 - AluSp SINE Alu -11 302 1 1206 171 6 99 chr15 18429676 18429787 -82950734 + AluJb SINE Alu 1 121 -191 1641 141 6 32 chr15 18429787 18430100 -82950421 - AluSp SINE Alu -8 305 1 1206 171 6 99 chr15 18430100 18430332 -82950189 + AluJb SINE Alu 121 312 0 184 226 113 0 chr15 18430586 18430639 -82949882 - MIR SINE MIR -93 169 111 497 171 83 138 chr15 18430955 18431178 -82949343 + L1MC5 LINE L1 7609 7810 -151 2133 141 0 0 chr15 18431178 18431491 -82949030 + AluSq SINE Alu 1 313 0 497 171 83 138 chr15 18431491 18431594 -82948927 + L1MC5 LINE L1 7810 7917 -44 1041 99 0 0 chr15 18431812 18431943 -82948578 - AluY SINE Alu -180 131 1 431 319 73 42 chr15 18433286 18433668 -82946853 - L1MCa LINE L1 -4673 1753 1224 257 314 57 51 chr15 18433686 18433900 -82946621 - L1MCa LINE L1 -5063 1353 1142 2418 84 7 0 chr15 18433900 18434208 -82946313 - AluSg SINE Alu 0 310 1 257 314 57 51 chr15 18434208 18434467 -82946054 - L1MCa LINE L1 -5274 1142 877 389 221 62 44 chr15 18434971 18435084 -82945437 - L1MCa LINE L1 -5954 462 348 193 274 333 10 chr15 18437128 18437230 -82943291 - L2 LINE L2 -5 3267 3133 418 243 52 66 chr15 18437679 18437967 -82942554 - L1MC5 LINE L1 -184 7777 7494 1052 178 57 105 chr15 18437972 18438130 -82942391 - MLT1B LTR MaLR 0 396 232 2501 82 0 3 chr15 18438130 18438436 -82942085 - AluY SINE Alu -6 305 1 1052 178 57 105 chr15 18438436 18438521 -82942000 - MLT1B LTR MaLR -164 232 144 2306 103 7 0 chr15 18438521 18438823 -82941698 - AluSp SINE Alu -5 308 5 1052 178 57 105 chr15 18438823 18438993 -82941528 - MLT1B LTR MaLR -252 144 4 309 286 109 11 chr15 18439000 18439175 -82941346 - L1MC5 LINE L1 -465 7496 7305 400 235 61 17 chr15 18439309 18439424 -82941097 - L1MC5 LINE L1 -735 7226 7107 303 314 36 6 chr15 18439605 18439764 -82940757 - L1MC3 LINE L1 -912 6873 6692 1930 169 3 3 chr15 18439796 18440097 -82940424 - AluJb SINE Alu -9 303 3 1603 200 225 25 chr15 18440723 18441234 -82939287 - MER90 LTR ERV1 0 614 2 1855 109 4 0 chr15 18441245 18441502 -82939019 - AluSg SINE Alu -52 258 1 634 212 90 59 chr15 18442098 18442320 -82938201 - L1MC5 LINE L1 -53 7908 7680 1749 191 48 18 chr15 18443112 18443504 -82937017 - L1MB4 LINE L1 0 6180 5777 1186 143 0 0 chr15 18443504 18443679 -82936842 - AluSg/x SINE Alu -17 293 119 22 0 0 0 chr15 18443679 18443701 -82936820 + AT_rich Low_complexity Low_complexity 1 22 0 2122 123 0 7 chr15 18443914 18444216 -82936305 - AluSx SINE Alu -12 300 1 948 86 0 14 chr15 18444386 18444525 -82935996 - AluY SINE Alu 0 311 175 740 81 0 0 chr15 18444626 18444725 -82935796 + AluY SINE Alu 209 307 -4 364 283 179 36 chr15 18444783 18445648 -82934873 - L1MEc LINE L1 -4579 1817 829 2914 223 76 14 chr15 18445670 18447027 -82933494 + L1ME1 LINE L1 4493 5922 -244 990 179 0 6 chr15 18447045 18447224 -82933297 + AluJb SINE Alu 131 308 -4 628 184 14 14 chr15 18447359 18447500 -82933021 + L1MA10 LINE L1 6192 6332 -2 2532 31 41 0 chr15 18448665 18448955 -82931566 + AluY SINE Alu 1 302 -9 2331 71 0 3 chr15 18449698 18450009 -82930512 + AluY SINE Alu 1 310 0 270 0 0 0 chr15 18450645 18450675 -82929846 + (GGGAA)n Simple_repeat Simple_repeat 5 34 0 2502 238 46 26 chr15 18450877 18451617 -82928904 - L1ME3A LINE L1 -9 6161 5407 184 342 179 5 chr15 18453233 18453423 -82927098 + L2 LINE L2 1824 2046 -1268 2698 42 0 0 chr15 18454107 18454418 -82926103 + AluY SINE Alu 1 311 0 242 308 0 47 chr15 18454739 18454846 -82925675 + MER5A DNA MER1_type 32 133 -56 386 231 146 15 chr15 18455096 18455226 -82925295 - MER103 DNA DNA -12 154 8 829 196 25 27 chr15 18456448 18456635 -82923886 + L1MC3 LINE L1 6196 6357 -2 265 236 307 21 chr15 18457275 18457415 -82923106 - L2 LINE L2 -20 3293 3114 1542 122 96 0 chr15 18457758 18457988 -82922533 - AluSx SINE Alu -12 300 49 7587 87 14 21 chr15 18457988 18459052 -82921469 + MER11C LTR ERVK 1 1057 -14 345 139 0 97 chr15 18459051 18459123 -82921398 - Alu SINE Alu -245 54 1 * 369 296 78 31 chr15 18459156 18459429 -82921092 - L1ME3 LINE L1 -206 5915 5650 295 271 125 20 chr15 18459486 18459729 -82920792 - L1ME3 LINE L1 -767 5395 5257 422 233 124 30 chr15 18459837 18459991 -82920530 + L1MC4a LINE L1 5722 5901 -1907 1360 175 26 63 chr15 18459991 18460294 -82920227 + AluJb SINE Alu 1 292 -20 422 233 124 30 chr15 18460294 18460341 -82920180 + L1MC4a LINE L1 5901 5942 -1866 902 131 24 42 chr15 18460342 18460510 -82920011 - AluSp SINE Alu -121 192 28 2454 157 47 19 chr15 18460511 18460983 -82919538 + LTR15 LTR ERV1 2 486 -7 258 108 0 0 chr15 18461014 18461051 -82919470 - AluSp SINE Alu -265 37 1 606 188 8 8 chr15 18461079 18461196 -82919325 + AluJo/FLAM SINE Alu 1 117 -185 1595 149 3 50 chr15 18461199 18461521 -82919000 - AluSp SINE Alu 0 313 7 835 227 133 43 chr15 18461556 18461669 -82918852 + AluJb SINE Alu 2 103 -209 1619 163 7 10 chr15 18461669 18461976 -82918545 - AluSp SINE Alu -7 306 1 835 227 133 43 chr15 18461976 18462118 -82918403 + AluJb SINE Alu 103 280 -32 1612 166 6 43 chr15 18462124 18462449 -82918072 - AluSp SINE Alu 0 313 1 1257 154 6 101 chr15 18462477 18462594 -82917927 + AluJb SINE Alu 1 128 -184 1690 162 0 29 chr15 18462594 18462902 -82917619 - AluSp SINE Alu -14 299 1 1257 154 6 101 chr15 18462902 18463129 -82917392 + AluJb SINE Alu 128 312 0 409 220 63 107 chr15 18463755 18463980 -82916541 + L1MC5 LINE L1 7609 7817 -144 2215 124 0 0 chr15 18463980 18464286 -82916235 + AluSq SINE Alu 1 306 -7 409 220 63 107 chr15 18464286 18464378 -82916143 + L1MC5 LINE L1 7817 7912 -49 1735 150 7 7 chr15 18465575 18465855 -82914666 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr15 18465857 18465884 -82914637 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1398 208 0 4 chr15 18465924 18466169 -82914352 + AluJo SINE Alu 1 244 -68 38 61 0 0 chr15 18466911 18466977 -82913544 + AT_rich Low_complexity Low_complexity 1 66 0 21 36 0 0 chr15 18467433 18467461 -82913060 + AT_rich Low_complexity Low_complexity 1 28 0 843 85 25 8 chr15 18467673 18467791 -82912730 - AluY SINE Alu -191 120 1 1564 65 0 10 chr15 18468032 18468231 -82912290 + AluY SINE Alu 111 307 -4 1690 197 37 8 chr15 18468253 18468608 -82911913 + MLT1A1 LTR MaLR 1 365 0 935 195 32 52 chr15 18468868 18469119 -82911402 + MLT1A1 LTR MaLR 120 365 0 266 211 0 0 chr15 18469142 18469194 -82911327 + FLAM SINE Alu 80 131 -2 2364 57 3 17 chr15 18469294 18469594 -82910927 + AluY SINE Alu 1 296 -15 31 26 0 0 chr15 18469741 18469779 -82910742 + AT_rich Low_complexity Low_complexity 1 38 0 2335 82 0 3 chr15 18469797 18470103 -82910418 - AluY SINE Alu -6 305 1 329 219 36 51 chr15 18470111 18470248 -82910273 + HAL1b LINE L1 1192 1326 -22 2132 96 0 60 chr15 18470924 18471238 -82909283 + AluY SINE Alu 3 297 -14 24 0 0 0 chr15 18471500 18471524 -82908997 + AT_rich Low_complexity Low_complexity 1 24 0 970 207 110 42 chr15 18472223 18472605 -82907916 - LTR37A LTR ERV1 0 426 19 218 122 0 41 chr15 18472883 18472932 -82907589 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 341 294 12 19 chr15 18474188 18474348 -82906173 + AluY SINE Alu 1 159 -142 3378 209 31 53 chr15 18474449 18474754 -82905767 + MER41-int LTR ERV1 1655 1965 -3981 387 0 0 0 chr15 18474754 18474797 -82905724 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3378 209 31 53 chr15 18474797 18475363 -82905158 + MER41-int LTR ERV1 1965 2507 -3439 251 175 0 111 chr15 18475534 18475597 -82904924 - MER61E LTR ERV1 -415 154 99 334 263 13 0 chr15 18475600 18475676 -82904845 - LTR25 LTR ERV1 -438 356 280 8765 156 27 20 chr15 18475840 18477567 -82902954 - MER61E-int LTR ERV1 -3 6993 5281 2198 136 0 0 chr15 18477567 18477869 -82902652 - AluSg SINE Alu -8 302 1 8765 156 27 20 chr15 18477869 18477925 -82902596 - MER61E-int LTR ERV1 -1715 5281 2479 539 70 0 0 chr15 18478025 18478096 -82902425 + L1PA5 LINE L1 5875 5945 -209 1107 243 67 13 chr15 18478364 18478664 -82901857 - HERVL74 LTR ERVL -1834 3851 3536 979 270 61 0 chr15 18478675 18478953 -82901568 - HERVL74 LTR ERVL -2261 3424 3130 1595 239 28 3 chr15 18478954 18479309 -82901212 + MLT1A1 LTR MaLR 2 365 0 2639 212 16 12 chr15 18479313 18479875 -82900646 + MLT1A1-int LTR MaLR 4 567 -1168 228 67 0 0 chr15 18480044 18480074 -82900447 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 1409 325 47 16 chr15 18480211 18480719 -82899802 - HERVL74 LTR ERVL -4748 937 414 971 176 16 21 chr15 18480765 18480952 -82899569 - MER61E LTR ERV1 -43 526 341 527 154 0 0 chr15 18481096 18481174 -82899347 + FRAM SINE Alu 68 145 -31 267 31 0 0 chr15 18481174 18481206 -82899315 + (GGAGAA)n Simple_repeat Simple_repeat 3 34 0 1437 249 57 73 chr15 18481221 18481726 -82898795 + MLT-int LTR MaLR 606 1102 -633 1700 208 46 3 chr15 18481729 18482056 -82898465 + MLT1A1 LTR MaLR 25 365 0 1141 219 8 4 chr15 18482058 18482295 -82898226 - HERVL74 LTR ERVL -3661 2024 1787 12769 167 60 63 chr15 18482413 18483860 -82896661 - LTR25-int LTR ERV1 -2207 4789 3793 2241 115 0 22 chr15 18483860 18484174 -82896347 + AluSc SINE Alu 1 307 -2 12769 167 60 63 chr15 18484174 18485848 -82894673 - LTR25-int LTR ERV1 -3203 3793 2116 3984 245 38 40 chr15 18485857 18487131 -82893390 - LTR25-int LTR ERV1 -5247 1749 479 992 237 95 53 chr15 18487284 18487437 -82893084 + LTR23-int LTR ERV1 998 1143 -4803 2179 62 7 56 chr15 18487437 18487773 -82892748 + AluY SINE Alu 1 311 0 992 237 95 53 chr15 18487773 18488311 -82892210 + LTR23-int LTR ERV1 1143 2375 -3571 2417 219 51 65 chr15 18488312 18488397 -82892124 + LTR23-int LTR ERV1 2259 2344 -2536 2017 104 0 0 chr15 18488397 18488657 -82891864 - AluSx SINE Alu -9 303 44 2417 219 51 65 chr15 18488657 18489493 -82891028 + LTR23-int LTR ERV1 2344 2888 -1992 1572 249 37 31 chr15 18489544 18489864 -82890657 + LTR23-int LTR ERV1 2239 2564 -2559 2683 33 0 0 chr15 18489864 18490165 -82890356 + AluY SINE Alu 1 301 -10 1572 249 37 31 chr15 18490165 18490325 -82890196 + LTR23-int LTR ERV1 2564 2722 -2401 678 332 56 23 chr15 18490521 18490952 -82889569 - L1M3c LINE L1 -5696 445 1 1405 279 166 14 chr15 18490983 18491717 -82888804 - L1ME1 LINE L1 -7 6159 5314 804 161 7 22 chr15 18491724 18491861 -82888660 - FRAM SINE Alu -19 157 23 774 223 58 22 chr15 18491899 18492173 -82888348 - L1ME1 LINE L1 -868 5278 4995 1291 231 77 12 chr15 18492186 18492615 -82887906 - L1ME1 LINE L1 -1328 4818 4362 3713 161 19 9 chr15 18492620 18493003 -82887518 - L1PB4 LINE L1 -2 6154 5761 396 0 0 0 chr15 18493003 18493047 -82887474 + (TA)n Simple_repeat Simple_repeat 2 45 0 3713 161 19 9 chr15 18493047 18493310 -82887211 - L1PB4 LINE L1 -395 5761 5502 2170 125 3 6 chr15 18493437 18493750 -82886771 + AluSx SINE Alu 1 312 0 471 270 138 6 chr15 18493837 18493996 -82886525 + L1MD3 LINE L1 6663 6842 -1153 2187 128 0 0 chr15 18494029 18494326 -82886195 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr15 18494360 18494382 -82886139 + AT_rich Low_complexity Low_complexity 1 22 0 432 55 0 0 chr15 18494622 18494677 -82885844 + (TA)n Simple_repeat Simple_repeat 1 55 0 2178 118 3 0 chr15 18494698 18494994 -82885527 - AluSc SINE Alu -12 297 1 6093 144 16 40 chr15 18494994 18496779 -82883742 - L1MA3 LINE L1 -246 6059 4233 2317 110 0 0 chr15 18496779 18497088 -82883433 + AluSx SINE Alu 1 309 -3 6093 144 16 40 chr15 18497088 18497251 -82883270 - L1MA3 LINE L1 -2072 4233 4162 2189 133 13 0 chr15 18497251 18497559 -82882962 - AluSx SINE Alu 0 312 1 6093 144 16 40 chr15 18497559 18497598 -82882923 - L1MA3 LINE L1 -2143 4162 4124 5320 20 0 8 chr15 18497605 18498213 -82882308 - L1PA2 LINE L1 0 6155 5553 2702 29 0 0 chr15 18498213 18498527 -82881994 + L1P LINE L1 4781 5094 -1052 1149 91 0 0 chr15 18498627 18498770 -82881751 - AluY SINE Alu -168 143 1 771 261 147 12 chr15 18498770 18499104 -82881417 - L1M4 LINE L1 -938 5208 4830 331 130 0 0 chr15 18499130 18499184 -82881337 - L1MA5A LINE L1 -2 6295 6242 2029 142 3 3 chr15 18499184 18499493 -82881028 - AluSx SINE Alu -3 309 1 1982 129 3 29 chr15 18499507 18499818 -82880703 - AluJb SINE Alu -9 303 1 572 116 30 2 chr15 18499818 18499914 -82880607 - L1MC/D LINE L1 -672 5625 5520 423 138 0 0 chr15 18499969 18500034 -82880487 + L1MA5A LINE L1 6183 6247 -50 771 192 8 0 chr15 18500043 18500173 -82880348 - AluSg/x SINE Alu -49 263 133 2175 109 0 3 chr15 18500173 18500487 -82880034 - AluSx SINE Alu 0 313 1 2299 82 7 0 chr15 18500509 18500827 -82879694 - AluSg SINE Alu 0 320 1 2064 98 47 0 chr15 18501363 18501638 -82878883 + AluSx SINE Alu 13 300 -12 404 234 76 21 chr15 18503136 18503281 -82877240 - MIR SINE MIR -109 153 1 389 287 17 17 chr15 18503534 18503649 -82876872 - L1ME LINE L1 -441 5680 5566 2176 117 27 3 chr15 18503725 18504024 -82876497 - AluSx SINE Alu -6 306 1 1879 136 3 81 chr15 18504031 18504232 -82876289 - AluJo SINE Alu 0 312 146 2227 101 3 7 chr15 18504232 18504540 -82875981 - AluSg SINE Alu -3 307 1 1879 136 3 81 chr15 18504540 18504670 -82875851 - AluJo SINE Alu -166 146 7 236 88 0 0 chr15 18504881 18504915 -82875606 - Alu SINE Alu -265 34 1 780 229 28 0 chr15 18505022 18505201 -82875320 + MER5A DNA MER1_type 6 189 0 2223 118 0 7 chr15 18505518 18505822 -82874699 - AluSg SINE Alu -8 302 1 338 213 53 0 chr15 18505824 18505918 -82874603 - MIR SINE MIR -147 115 17 1954 143 0 17 chr15 18506924 18507225 -82873296 + AluJb SINE Alu 1 296 -16 1338 147 117 57 chr15 18507588 18507734 -82872787 + AluJo SINE Alu 1 137 -175 2227 109 24 0 chr15 18507734 18508028 -82872493 + AluSg SINE Alu 1 301 -9 1338 147 117 57 chr15 18508028 18508146 -82872375 + AluJo SINE Alu 137 281 -31 200 83 0 28 chr15 18508147 18508183 -82872338 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 1942 140 11 49 chr15 18508293 18508642 -82871879 - MER1B DNA MER1_type 0 337 2 986 188 28 0 chr15 18509366 18509542 -82870979 + FRAM SINE Alu 1 176 0 539 181 0 38 chr15 18509551 18509711 -82870810 + GA-rich Low_complexity Low_complexity 3 156 0 232 190 210 30 chr15 18509994 18510094 -82870427 + MLT1K LTR MaLR 125 242 -346 242 286 8 48 chr15 18510253 18510379 -82870142 + MLT1K LTR MaLR 457 577 -11 2321 129 0 0 chr15 18511459 18511770 -82868751 - AluSx SINE Alu -1 311 1 1509 169 12 0 chr15 18511878 18512132 -82868389 + AluJb SINE Alu 51 307 -5 1824 155 54 0 chr15 18512208 18512486 -82868035 + AluJo SINE Alu 3 295 -17 334 230 0 46 chr15 18512577 18512664 -82867857 + MLT1F1 LTR MaLR 62 144 -449 2784 84 0 0 chr15 18512691 18513046 -82867475 - THE1A LTR MaLR 0 355 1 445 276 125 0 chr15 18513051 18513203 -82867318 + MLT1F1 LTR MaLR 121 291 -276 1174 93 0 13 chr15 18513204 18513354 -82867167 + AluSq/x SINE Alu 2 149 -164 213 39 0 0 chr15 18513376 18513402 -82867119 + (A)n Simple_repeat Simple_repeat 1 26 0 864 209 141 30 chr15 18513402 18513665 -82866856 + MLT1F1 LTR MaLR 276 567 0 251 289 0 48 chr15 18513673 18513756 -82866765 - MLT1J LTR MaLR -431 80 2 542 159 23 15 chr15 18513839 18513971 -82866550 + CT-rich Low_complexity Low_complexity 3 135 0 809 146 23 15 chr15 18513985 18514115 -82866406 - FLAM_C SINE Alu -2 131 1 3395 155 11 14 chr15 18514151 18514713 -82865808 + LTR31 LTR ERV1 60 619 0 208 259 24 35 chr15 18514720 18514805 -82865716 + MIR SINE MIR 156 239 -23 221 0 35 0 chr15 18514827 18514856 -82865665 + (TTA)n Simple_repeat Simple_repeat 2 31 0 958 104 0 15 chr15 18514856 18514984 -82865537 - AluSp SINE Alu -185 128 1 2260 97 33 0 chr15 18515166 18515465 -82865056 - AluSx SINE Alu -1 311 3 1879 112 15 8 chr15 18515748 18516015 -82864506 + AluSx SINE Alu 33 301 -11 2298 121 0 3 chr15 18516616 18516929 -82863592 + AluSx SINE Alu 1 312 0 2051 122 28 0 chr15 18516997 18517283 -82863238 + AluSx SINE Alu 1 294 -18 1042 169 0 17 chr15 18517567 18517739 -82862782 + FAM SINE Alu 1 169 -6 1776 190 0 3 chr15 18517801 18518112 -82862409 + AluJo SINE Alu 1 310 -2 209 195 0 0 chr15 18518187 18518228 -82862293 + (TG)n Simple_repeat Simple_repeat 1 41 0 2382 103 0 25 chr15 18518294 18518614 -82861907 + AluSx SINE Alu 1 312 0 201 216 39 0 chr15 18518918 18518969 -82861552 + MIR SINE MIR 95 147 -61 390 42 0 0 chr15 18519105 18519153 -82861368 + (TTTTC)n Simple_repeat Simple_repeat 3 50 0 1837 133 0 86 chr15 18520050 18520374 -82860147 + AluSx SINE Alu 2 297 -15 321 235 144 15 chr15 18520387 18520547 -82859974 + MIR SINE MIR 45 231 -31 1025 155 0 0 chr15 18521319 18521474 -82859047 + 7SLRNA srpRNA srpRNA 95 249 -71 261 57 0 0 chr15 18522615 18522650 -82857871 + (TGGGGG)n Simple_repeat Simple_repeat 6 40 0 1007 162 133 54 chr15 18525203 18525444 -82855077 - MER61E-int LTR ERV1 -6707 289 30 618 212 109 2 chr15 18525484 18525654 -82854867 - MER61E LTR ERV1 -20 774 342 786 191 114 36 chr15 18525859 18526184 -82854337 - MSTD LTR MaLR -8 420 1 2234 241 47 2 chr15 18526184 18526674 -82853847 - MSTD-int LTR MaLR 0 1735 1224 2047 167 36 44 chr15 18526676 18527237 -82853284 - LTR35 LTR ERV1 0 618 1 392 166 69 97 chr15 18527663 18527808 -82852713 - LTR35-int LTR ERV1 -277 6054 5914 2727 227 42 8 chr15 18527828 18528490 -82852031 - LTR35-int LTR ERV1 -541 5790 5106 1027 128 7 0 chr15 18528504 18528652 -82851869 + MER41B LTR ERV1 305 453 -182 1437 136 0 5 chr15 18528652 18528866 -82851655 + AluSq SINE Alu 82 294 -19 608 81 50 20 chr15 18528866 18528965 -82851556 + MER41B LTR ERV1 448 549 -86 741 156 151 63 chr15 18528974 18529212 -82851309 - LTR35-int LTR ERV1 -3553 4567 4309 * 2510 214 104 46 chr15 18529199 18529489 -82851032 - LTR35-int LTR ERV1 -2242 3704 3432 2044 119 31 0 chr15 18529489 18529775 -82850746 - AluSx SINE Alu -17 295 1 2510 214 104 46 chr15 18529775 18529803 -82850718 - LTR35-int LTR ERV1 -2514 3432 3407 1527 134 25 0 chr15 18529803 18530041 -82850480 - L1PA15 LINE L1 -8 6157 5914 2510 214 104 46 chr15 18530041 18530830 -82849691 - LTR35-int LTR ERV1 -2539 3407 979 1029 133 0 0 chr15 18531000 18531143 -82849378 + AluSg/x SINE Alu 155 297 -13 2307 105 3 6 chr15 18531147 18531461 -82849060 + AluSp SINE Alu 1 313 0 2053 125 3 3 chr15 18531619 18531915 -82848606 - AluSx SINE Alu -16 296 1 1374 152 18 5 chr15 18532142 18532366 -82848155 + AluJb SINE Alu 1 227 -85 2089 93 0 0 chr15 18532373 18532641 -82847880 - AluSx SINE Alu -44 268 1 330 322 17 8 chr15 18533167 18533285 -82847236 + CT-rich Low_complexity Low_complexity 3 121 0 1874 133 0 73 chr15 18534347 18534677 -82845844 - AluSg SINE Alu -4 306 1 2071 127 3 0 chr15 18534900 18535192 -82845329 - AluSx SINE Alu -19 293 1 2153 132 0 0 chr15 18535566 18535876 -82844645 - AluSg SINE Alu 0 310 1 2198 258 96 10 chr15 18535881 18536661 -82843860 - L1ME1 LINE L1 0 6166 5320 2018 172 120 2 chr15 18536734 18537159 -82843362 - LTR53 LTR ERVL -40 479 5 608 209 16 44 chr15 18537204 18537386 -82843135 - L1MDa LINE L1 -4821 1719 1543 412 212 117 51 chr15 18537390 18537527 -82842994 + MER21B LTR ERV1 661 806 -57 2176 127 3 3 chr15 18538100 18538408 -82842113 - AluY SINE Alu -3 308 1 445 306 122 3 chr15 18540949 18541243 -82839278 - L1ME3 LINE L1 -110 6052 5724 1811 163 13 3 chr15 18541243 18541550 -82838971 - AluJo SINE Alu 0 312 3 500 265 66 24 chr15 18541656 18541822 -82838699 + MLT1G LTR MaLR 73 245 -345 2654 45 0 0 chr15 18541826 18542137 -82838384 + AluY SINE Alu 1 311 0 595 264 97 33 chr15 18542457 18542726 -82837795 - MLT1E2 LTR MaLR -341 285 1 295 275 88 0 chr15 18542757 18542848 -82837673 - L2 LINE L2 -20 3252 3154 698 102 0 10 chr15 18543186 18543328 -82837193 + AluSp/q SINE Alu 192 313 0 21 0 0 0 chr15 18543541 18543562 -82836959 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr15 18543967 18543991 -82836530 + AT_rich Low_complexity Low_complexity 1 24 0 310 305 114 38 chr15 18544088 18544324 -82836197 + L1M4 LINE L1 3620 3873 -2273 1676 226 9 6 chr15 18544351 18544700 -82835821 + MLT1A1 LTR MaLR 1 350 -15 464 111 0 67 chr15 18544861 18544951 -82835570 + L1PA8 LINE L1 6083 6166 -6 2211 160 52 5 chr15 18545608 18546015 -82834506 - MSTB LTR MaLR 0 426 1 186 284 0 0 chr15 18546264 18546345 -82834176 + A-rich Low_complexity Low_complexity 5 85 0 2380 75 0 31 chr15 18546508 18546828 -82833693 + AluY SINE Alu 1 310 -1 22 0 0 0 chr15 18546971 18546993 -82833528 + AT_rich Low_complexity Low_complexity 1 22 0 2486 59 0 7 chr15 18547066 18547369 -82833152 - AluY SINE Alu -10 301 1 292 85 6 0 chr15 18547922 18547971 -82832550 - MLT2C1 LTR ERVL -4 410 349 797 246 20 0 chr15 18548539 18548738 -82831783 + L1MC4 LINE L1 7337 7539 -503 310 227 38 8 chr15 18548738 18548870 -82831651 + GA-rich Low_complexity Low_complexity 4 139 0 613 184 101 77 chr15 18548926 18549038 -82831483 + L1MC4 LINE L1 7593 7714 -328 2394 57 0 41 chr15 18549038 18549352 -82831169 - AluY SINE Alu -10 301 1 613 184 101 77 chr15 18549352 18549446 -82831075 + L1MC4 LINE L1 7714 7804 -238 186 143 0 0 chr15 18549488 18549523 -82830998 + (TA)n Simple_repeat Simple_repeat 2 36 0 947 190 22 66 chr15 18549558 18549784 -82830737 - MER20 DNA MER1_type 0 219 4 770 306 39 11 chr15 18549825 18550184 -82830337 + L1MEc LINE L1 1601 1969 -4427 1433 195 66 10 chr15 18550219 18550521 -82830000 - L1MC1 LINE L1 0 6333 6015 801 287 10 10 chr15 18550862 18551162 -82829359 + L1MEc LINE L1 2209 2508 -3707 1279 262 51 8 chr15 18551253 18551760 -82828761 + L1MEc LINE L1 2506 3034 -3181 * 3011 116 57 116 chr15 18551740 18551869 -82828652 + L1MA5A LINE L1 5658 5793 -504 1819 128 79 0 chr15 18551869 18552135 -82828386 + AluSx SINE Alu 1 287 -25 3011 116 57 116 chr15 18552135 18552685 -82827836 + L1MA5A LINE L1 5793 6297 0 239 278 221 0 chr15 18552800 18553099 -82827422 + L1MEc LINE L1 3164 3528 -2687 299 214 14 0 chr15 18553113 18553183 -82827338 - L1 LINE L1 -2743 3403 3333 705 215 11 6 chr15 18553189 18553366 -82827155 + L1 LINE L1 2894 3071 -3075 22 0 0 0 chr15 18556774 18556796 -82823725 + GC_rich Low_complexity Low_complexity 1 22 0 1698 221 30 24 chr15 18557152 18557583 -82822938 + L1 LINE L1 3062 3498 -2648 2233 71 0 39 chr15 18557583 18557891 -82822630 + AluY SINE Alu 1 296 -15 1698 221 30 24 chr15 18557891 18557966 -82822555 + L1 LINE L1 3498 3571 -2575 1146 170 21 21 chr15 18557981 18558175 -82822346 - AluJo SINE Alu -115 197 4 662 44 11 0 chr15 18558187 18558277 -82822244 + (TA)n Simple_repeat Simple_repeat 1 91 0 2161 128 3 0 chr15 18558278 18558575 -82821946 - AluSx SINE Alu -14 298 1 2259 110 3 0 chr15 18559110 18559410 -82821111 - AluY SINE Alu -10 301 1 1730 74 4 81 chr15 18559661 18559932 -82820589 - AluY SINE Alu -2 309 60 368 143 0 0 chr15 18560557 18560613 -82819908 + AluJb SINE Alu 59 114 -188 760 205 13 0 chr15 18560628 18560784 -82819737 - AluSp SINE Alu -24 289 132 1691 172 17 7 chr15 18560788 18561085 -82819436 + LTR15 LTR ERV1 188 487 -6 733 189 18 79 chr15 18561151 18561270 -82819251 + AluJb SINE Alu 2 102 -210 1744 173 0 0 chr15 18561270 18561570 -82818951 - AluSp SINE Alu -13 300 1 733 189 18 79 chr15 18561570 18561678 -82818843 + AluJb SINE Alu 102 215 -97 257 88 0 0 chr15 18561681 18561715 -82818806 + AluJb SINE Alu 84 117 -185 691 142 0 25 chr15 18561742 18561862 -82818659 - AluSp SINE Alu -194 119 3 584 170 18 9 chr15 18561893 18562005 -82818516 + AluJb SINE Alu 2 114 -198 934 161 11 0 chr15 18562007 18562181 -82818340 - AluSp SINE Alu -16 297 122 391 141 0 0 chr15 18562316 18562380 -82818141 - AluJ/FLAM SINE Alu -238 64 1 558 239 114 10 chr15 18562380 18562581 -82817940 - L1 LINE L1 -3250 2896 2675 302 202 53 26 chr15 18562581 18562673 -82817848 + (TATATG)n Simple_repeat Simple_repeat 4 101 -19 2074 84 0 18 chr15 18562673 18562948 -82817573 + AluY SINE Alu 31 300 -11 302 202 53 26 chr15 18562948 18562969 -82817552 + (TATATG)n Simple_repeat Simple_repeat 101 120 0 2345 71 0 49 chr15 18562969 18563277 -82817244 + AluY SINE Alu 1 293 -18 320 238 133 0 chr15 18563279 18563384 -82817137 - L1 LINE L1 -3460 2686 2568 1322 106 106 0 chr15 18564354 18564562 -82815959 + MER30 DNA MER1_type 1 230 0 1653 142 92 0 chr15 18565545 18565806 -82814715 - AluJb SINE Alu -19 293 9 985 266 136 26 chr15 18566818 18567107 -82813414 - L1ME2 LINE L1 -112 6052 5796 1856 162 10 3 chr15 18567107 18567415 -82813106 - AluJb SINE Alu 0 312 3 985 266 136 26 chr15 18567415 18567624 -82812897 - L1ME2 LINE L1 -368 5796 5499 2228 125 3 0 chr15 18568163 18568475 -82812046 - AluSp SINE Alu 0 313 1 2146 136 0 0 chr15 18568495 18568797 -82811724 - AluSx SINE Alu -10 302 1 208 100 0 143 chr15 18569556 18569626 -82810895 + (GGGTG)n Simple_repeat Simple_repeat 4 63 0 257 203 51 38 chr15 18570334 18570413 -82810108 + Charlie5 DNA MER1_type 45 124 -2488 * 1079 253 3 7 chr15 18570411 18570704 -82809817 + Charlie5 DNA MER1_type 2238 2529 -83 500 152 0 13 chr15 18570704 18570783 -82809738 - AluSg/x SINE Alu -18 291 214 470 233 33 0 chr15 18570884 18571004 -82809517 + MIR3 SINE MIR 51 174 -34 533 62 0 25 chr15 18571378 18571459 -82809062 + Alu SINE Alu 232 310 -2 1606 121 159 8 chr15 18572076 18572333 -82808188 - AluSx SINE Alu -5 297 2 201 74 0 0 chr15 18572360 18572387 -82808134 + (T)n Simple_repeat Simple_repeat 1 27 0 453 306 2 4 chr15 18572761 18573285 -82807236 + CT-rich Low_complexity Low_complexity 1 523 0 421 299 0 0 chr15 18573313 18573635 -82806886 + CT-rich Low_complexity Low_complexity 1 322 0 427 294 0 22 chr15 18573704 18573888 -82806633 + CT-rich Low_complexity Low_complexity 1 180 0 486 314 1 17 chr15 18573960 18574572 -82805949 + CT-rich Low_complexity Low_complexity 1 602 0 234 279 15 0 chr15 18575180 18575248 -82805273 - MIR SINE MIR -87 121 53 1181 117 17 22 chr15 18575587 18575766 -82804755 - AluSp SINE Alu 0 313 136 529 260 157 20 chr15 18575901 18576105 -82804416 - MIR SINE MIR -10 252 21 261 83 0 0 chr15 18576299 18576335 -82804186 + (CA)n Simple_repeat Simple_repeat 2 37 0 287 261 67 25 chr15 18577726 18577845 -82802676 - L2 LINE L2 -3 3310 3187 196 282 176 0 chr15 18577842 18577927 -82802594 - MIR3 SINE MIR 0 208 109 * 351 293 64 29 chr15 18577985 18578125 -82802396 - MIR SINE MIR -70 192 48 711 92 0 0 chr15 18580620 18580707 -82799814 + AluS SINE Alu 1 87 -226 2478 77 0 0 chr15 18580822 18581120 -82799401 + AluSg SINE Alu 1 298 -12 2165 107 0 13 chr15 18581370 18581678 -82798843 - AluSc SINE Alu -5 304 1 474 253 60 53 chr15 18581768 18582053 -82798468 - L1M4 LINE L1 -2186 3960 3674 2501 63 0 3 chr15 18582059 18582360 -82798161 - AluY SINE Alu -11 300 1 201 241 35 0 chr15 18582565 18582623 -82797898 + (TA)n Simple_repeat Simple_repeat 2 61 0 926 10 0 0 chr15 18583291 18583395 -82797126 - AluYa5/8 SINE Alu -3 307 204 2493 58 0 0 chr15 18583397 18583691 -82796830 - AluY SINE Alu -17 294 1 1541 39 6 0 chr15 18583794 18583972 -82796549 - AluY SINE Alu -132 179 1 1185 15 0 0 chr15 18584010 18584143 -82796378 + AluY SINE Alu 176 308 -3 2501 39 0 0 chr15 18585517 18585823 -82794698 - AluY SINE Alu 0 306 1 659 281 35 5 chr15 18586173 18586372 -82794149 + MIR SINE MIR 10 214 -48 1518 92 5 0 chr15 18586736 18586943 -82793578 - L1MA3 LINE L1 0 6305 6098 2374 69 0 13 chr15 18587180 18587486 -82793035 - AluY SINE Alu -9 302 1 27 49 0 0 chr15 18587953 18587994 -82792527 + AT_rich Low_complexity Low_complexity 1 41 0 2427 66 0 0 chr15 18588266 18588569 -82791952 - AluY SINE Alu -8 303 1 237 339 16 8 chr15 18589034 18589161 -82791360 - L2 LINE L2 -2375 939 812 211 262 262 21 chr15 18589385 18589530 -82790991 + MIR SINE MIR 53 232 -30 1752 115 11 11 chr15 18592177 18592437 -82788084 - THE1C LTR MaLR 0 375 116 26 0 0 0 chr15 18592446 18592472 -82788049 + AT_rich Low_complexity Low_complexity 1 26 0 1052 186 67 0 chr15 18592497 18592690 -82787831 - MER2 DNA MER2_type -139 206 1 2614 49 0 7 chr15 18594281 18594586 -82785935 - AluY SINE Alu -6 305 3 2218 66 3 24 chr15 18594795 18595112 -82785409 - AluY SINE Alu 0 311 1 446 314 115 57 chr15 18595393 18595951 -82784570 + L2 LINE L2 1602 2191 -1123 647 200 123 0 chr15 18596049 18596204 -82784317 + MER58B DNA MER1_type 167 340 -1 302 254 109 52 chr15 18596769 18596962 -82783559 - L1MC4a LINE L1 -1932 5876 5673 28 0 0 0 chr15 18597246 18597274 -82783247 + AT_rich Low_complexity Low_complexity 1 28 0 1914 257 89 6 chr15 18597959 18598590 -82781931 + L1 LINE L1 2046 2726 -3420 662 212 155 21 chr15 18598630 18598745 -82781776 + AluJb SINE Alu 2 100 -212 1521 139 56 21 chr15 18598745 18598913 -82781608 - AluSp SINE Alu -5 298 114 270 0 0 0 chr15 18598913 18598943 -82781578 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1521 139 56 21 chr15 18598943 18599061 -82781460 - AluSp SINE Alu -189 114 2 662 212 155 21 chr15 18599061 18599138 -82781383 + AluJb SINE Alu 100 220 -92 1292 142 88 61 chr15 18599169 18599465 -82781056 - AluSp SINE Alu -9 304 1 904 260 94 76 chr15 18600185 18600408 -82780113 - L1ME3A LINE L1 -6 6164 5946 2160 96 3 7 chr15 18600408 18600701 -82779820 - AluSc SINE Alu -17 292 1 904 260 94 76 chr15 18600701 18601050 -82779471 - L1ME3A LINE L1 -224 5946 5576 2482 48 3 35 chr15 18601050 18601360 -82779161 + AluY SINE Alu 1 300 -11 904 260 94 76 chr15 18601360 18601470 -82779051 - L1ME3A LINE L1 -594 5576 5469 1845 234 68 12 chr15 18601475 18601958 -82778563 - MLT2B1 LTR ERVL -10 510 1 2813 233 46 25 chr15 18601961 18602856 -82777665 - ERVL LTR ERVL -3 5651 4773 1562 226 122 88 chr15 18602891 18603611 -82776910 - LTR1B LTR ERV1 -81 745 1 18794 201 34 18 chr15 18603611 18605711 -82774810 - ERVL LTR ERVL -949 4815 2623 1225 167 14 14 chr15 18605711 18605921 -82774600 + MER6B DNA MER2_type 1 210 0 18794 201 34 18 chr15 18605921 18607578 -82772943 - ERVL LTR ERVL -3141 2623 995 367 214 51 31 chr15 18607579 18607645 -82772876 + MER4-int LTR ERV1 351 421 -7699 314 61 20 0 chr15 18607645 18607694 -82772827 + (TG)n Simple_repeat Simple_repeat 1 50 0 367 214 51 31 chr15 18607694 18607725 -82772796 + MER4-int LTR ERV1 421 450 -7670 6925 153 58 35 chr15 18607798 18609179 -82771342 + MER4-int LTR ERV1 451 1863 -6257 815 182 25 106 chr15 18609194 18609384 -82771137 + MER4-int LTR ERV1 2346 2550 -4048 2433 64 0 0 chr15 18609384 18609681 -82770840 - AluY SINE Alu -14 297 1 815 182 25 106 chr15 18609681 18609859 -82770662 + MER4-int LTR ERV1 2550 3710 -2888 1893 150 40 52 chr15 18609869 18610216 -82770305 + MER61A LTR ERV1 1 343 0 263 245 41 31 chr15 18610218 18610316 -82770205 + MER61A-int LTR ERV1 3 101 -5116 1409 118 78 108 chr15 18610536 18610694 -82769827 + MER61A-int LTR ERV1 246 390 -4827 2391 76 0 19 chr15 18610694 18611011 -82769510 - AluY SINE Alu 0 311 1 1409 118 78 108 chr15 18611011 18611184 -82769337 + MER61A-int LTR ERV1 390 567 -4650 * 4325 88 13 8 chr15 18611164 18611788 -82768733 + MER61A-int LTR ERV1 1396 2022 -3195 * 7842 72 18 4 chr15 18611777 18612804 -82767717 + MER61A-int LTR ERV1 2948 3988 -1229 1710 227 25 19 chr15 18612804 18613289 -82767232 - L1 LINE L1 -2441 3705 3218 2762 188 69 21 chr15 18613289 18613368 -82767153 + MER4-int LTR ERV1 4962 5036 -3084 2344 87 0 7 chr15 18613368 18613667 -82766854 - AluSg SINE Alu -13 297 1 2762 188 69 21 chr15 18613667 18614214 -82766307 + MER4-int LTR ERV1 5036 5618 -2502 2559 71 0 0 chr15 18614223 18614534 -82765987 - AluY SINE Alu 0 311 1 3404 175 38 12 chr15 18614541 18615140 -82765381 + MER4-int LTR ERV1 3116 3730 -3028 256 184 0 0 chr15 18615134 18615183 -82765338 + MER4-int LTR ERV1 1114 1162 -5436 * 279 233 27 0 chr15 18615184 18615257 -82765264 + (TA)n Simple_repeat Simple_repeat 1 75 0 4535 157 104 68 chr15 18615262 18616242 -82764279 + MER4-int LTR ERV1 6631 7645 -475 235 143 0 71 chr15 18616242 18616284 -82764237 + LOR1b LTR ERV1 395 433 -28 1135 277 58 27 chr15 18616285 18616461 -82764060 - HERVL-B1 LTR ERVL -5185 469 300 1859 149 5 115 chr15 18616461 18616851 -82763670 - MER7A DNA MER2_type -1 345 1 1135 277 58 27 chr15 18616851 18617125 -82763396 - HERVL-B1 LTR ERVL -5354 300 5 231 118 0 0 chr15 18617125 18617159 -82763362 - MLT2B1 LTR ERVL -6 509 476 571 66 0 22 chr15 18617159 18617250 -82763271 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 967 252 110 3 chr15 18617252 18617569 -82762952 - MLT2B1 LTR ERVL -169 351 1 383 276 119 4 chr15 18617572 18617949 -82762572 - L1ME LINE L1 -688 5474 5043 1578 239 76 62 chr15 18618202 18618541 -82761980 + L1MEc LINE L1 2172 2505 -3710 2938 32 3 12 chr15 18618541 18618880 -82761641 - L1PA4 LINE L1 0 6155 5820 1578 239 76 62 chr15 18618880 18619299 -82761222 + L1MEc LINE L1 2505 2894 -3321 21 36 0 0 chr15 18620142 18620170 -82760351 + AT_rich Low_complexity Low_complexity 1 28 0 43 56 0 0 chr15 18620627 18620698 -82759823 + AT_rich Low_complexity Low_complexity 1 71 0 1306 208 0 4 chr15 18621439 18621684 -82758837 - AluJo SINE Alu -68 244 1 222 37 0 0 chr15 18621724 18621751 -82758770 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1657 150 7 7 chr15 18621754 18622034 -82758487 - AluSx SINE Alu -32 280 1 433 318 112 52 chr15 18622258 18622544 -82757977 - L1ME4a LINE L1 -198 5923 5621 413 191 75 125 chr15 18623201 18623301 -82757220 - L1MC5 LINE L1 -49 7912 7809 2039 135 0 6 chr15 18623301 18623613 -82756908 - AluSq SINE Alu -3 310 1 413 191 75 125 chr15 18623613 18623832 -82756689 - L1MC5 LINE L1 -152 7809 7609 1298 173 12 80 chr15 18624453 18624665 -82755856 - AluJb SINE Alu 0 302 118 1568 149 7 23 chr15 18624665 18624973 -82755548 + AluSp SINE Alu 1 303 -10 1298 173 12 80 chr15 18624973 18625084 -82755437 - AluJb SINE Alu -184 118 1 1608 131 13 33 chr15 18625111 18625417 -82755104 + AluSp SINE Alu 1 300 -13 577 179 8 8 chr15 18625424 18625541 -82754980 - FLAM_C SINE Alu -16 117 1 836 105 8 8 chr15 18625569 18625702 -82754819 + AluSp SINE Alu 1 133 -180 1534 157 9 46 chr15 18625708 18626032 -82754489 + AluSp SINE Alu 1 312 -1 392 125 16 0 chr15 18626034 18626098 -82754423 - AluJb SINE Alu -186 116 52 1514 157 3 35 chr15 18626124 18626437 -82754084 + AluSp SINE Alu 1 303 -10 545 207 9 9 chr15 18626438 18626554 -82753967 - AluJb SINE Alu -195 117 2 1428 183 29 7 chr15 18626620 18626893 -82753628 - LTR15 LTR ERV1 -6 487 209 27 0 0 0 chr15 18627628 18627655 -82752866 + AT_rich Low_complexity Low_complexity 1 27 0 208 233 11 111 chr15 18628229 18628319 -82752202 - L2 LINE L2 -2 3270 3190 1399 180 36 46 chr15 18630038 18630344 -82750177 + AluJo SINE Alu 1 303 -9 24 32 0 0 chr15 18630610 18630641 -82749880 + AT_rich Low_complexity Low_complexity 1 31 0 200 206 0 0 chr15 18630841 18630875 -82749646 + polypurine Low_complexity Low_complexity 3 36 0 2062 116 0 0 chr15 18631539 18631833 -82748688 + AluSq SINE Alu 2 295 -18 228 313 102 16 chr15 18631992 18632120 -82748401 - MIR SINE MIR -13 249 111 1581 100 129 30 chr15 18632294 18632565 -82747956 + AluSg SINE Alu 1 298 -12 3795 212 36 42 chr15 18634155 18635133 -82745388 - L1ME1 LINE L1 -5 6161 5198 2233 85 0 7 chr15 18635133 18635439 -82745082 - AluSg SINE Alu -6 304 1 3795 212 36 42 chr15 18635439 18635690 -82744831 - L1ME1 LINE L1 -968 5198 4947 365 100 0 17 chr15 18635718 18635778 -82744743 + (TCCC)n Simple_repeat Simple_repeat 3 61 0 1708 147 20 14 chr15 18635778 18636070 -82744451 - AluJo SINE Alu -18 294 1 459 255 57 14 chr15 18637890 18638031 -82742490 + MIR SINE MIR 50 196 -66 315 49 0 0 chr15 18639167 18639208 -82741313 + (TG)n Simple_repeat Simple_repeat 1 41 0 600 137 0 20 chr15 18639728 18639830 -82740691 + FLAM_A SINE Alu 43 142 0 1738 163 17 0 chr15 18640160 18640460 -82740061 + AluJb SINE Alu 1 305 -7 264 217 87 0 chr15 18640460 18640529 -82739992 + MIR SINE MIR 162 236 -26 1714 149 11 3 chr15 18640706 18640988 -82739533 + AluJb SINE Alu 9 292 -20 225 228 0 35 chr15 18641387 18641444 -82739077 + Tigger3(Golem) DNA MER2_type 49 103 -2926 * 2092 138 233 2 chr15 18641439 18641873 -82738648 + Tigger3(Golem) DNA MER2_type 2443 2976 -53 796 176 85 0 chr15 18641875 18642028 -82738493 + FRAM SINE Alu 1 166 -10 370 186 0 0 chr15 18642064 18642123 -82738398 + Tigger3(Golem) DNA MER2_type 2970 3028 -1 1839 155 3 3 chr15 18642337 18642640 -82737881 - AluJo SINE Alu -7 305 3 1563 208 0 0 chr15 18643437 18643721 -82736800 + AluJb SINE Alu 1 284 -28 206 289 0 0 chr15 18643916 18643961 -82736560 - MIR SINE MIR -25 237 193 1537 175 29 4 chr15 18644114 18644388 -82736133 + AluJo SINE Alu 1 281 -31 2040 131 13 0 chr15 18644455 18644761 -82735760 - AluSx SINE Alu 0 312 3 1843 131 0 54 chr15 18645007 18645321 -82735200 - AluJo SINE Alu -15 297 1 1142 298 90 23 chr15 18645743 18646025 -82734496 - MLT1K LTR MaLR -31 557 295 1771 122 0 57 chr15 18646025 18646321 -82734200 + AluSx SINE Alu 1 279 -33 1142 298 90 23 chr15 18646321 18646559 -82733962 - MLT1K LTR MaLR -293 295 2 1706 218 99 7 chr15 18646747 18647170 -82733351 + MLT1C LTR MaLR 6 467 0 330 287 11 0 chr15 18647304 18647398 -82733123 + MER58 DNA MER1_type 1 95 -291 518 202 0 48 chr15 18648359 18648483 -82732038 - L2 LINE L2 -5 3308 3191 362 311 0 0 chr15 18648485 18648575 -82731946 + MER58 DNA MER1_type 1 90 -251 2254 83 3 10 chr15 18648604 18648918 -82731603 + AluSq SINE Alu 1 312 -1 485 157 372 8 chr15 18648920 18649041 -82731480 + MER5A DNA MER1_type 17 181 -8 956 160 6 12 chr15 18649041 18649210 -82731311 + L1PB4 LINE L1 5830 5997 -159 1894 153 0 3 chr15 18649268 18649562 -82730959 + AluJb SINE Alu 2 294 -18 2139 77 11 0 chr15 18649564 18649850 -82730671 + AluSx SINE Alu 1 289 -23 598 239 0 0 chr15 18649876 18650006 -82730515 + L1PB4 LINE L1 6024 6153 -3 237 283 0 0 chr15 18650048 18650101 -82730420 + L2 LINE L2 3210 3262 -10 1722 202 97 36 chr15 18650101 18650279 -82730242 + MLT1D LTR MaLR 1 167 -338 1992 101 35 3 chr15 18650279 18650567 -82729954 - AluSx SINE Alu -15 297 1 1722 202 97 36 chr15 18650567 18650864 -82729657 + MLT1D LTR MaLR 167 505 0 413 306 112 0 chr15 18650899 18651033 -82729488 + MIR SINE MIR 61 209 -53 488 286 0 0 chr15 18651094 18651206 -82729315 + MIR SINE MIR 81 192 -70 1955 107 32 0 chr15 18651432 18651713 -82728808 - AluSx SINE Alu -22 290 1 2342 90 0 3 chr15 18652640 18652952 -82727569 - AluSx SINE Alu -1 311 1 192 318 153 0 chr15 18653042 18653127 -82727394 + L2 LINE L2 3175 3272 0 380 269 19 31 chr15 18653246 18653423 -82727098 - MIR3 SINE MIR -68 140 10 430 311 33 7 chr15 18653871 18654022 -82726499 - MIR SINE MIR -74 188 34 304 337 20 0 chr15 18654482 18654583 -82725938 - L2 LINE L2 -20 3293 3191 1024 192 56 14 chr15 18654585 18654750 -82725771 - MER58A DNA MER1_type -2196 224 47 2309 77 7 0 chr15 18654750 18655047 -82725474 + AluY SINE Alu 1 299 -12 1024 192 56 14 chr15 18655047 18655095 -82725426 - MER58A DNA MER1_type -2373 47 2 200 233 0 83 chr15 18655350 18655410 -82725111 + L2 LINE L2 3217 3271 -1 187 222 0 0 chr15 18655629 18655665 -82724856 + MIR SINE MIR 114 149 -59 2303 71 0 3 chr15 18655795 18656089 -82724432 + AluSc SINE Alu 1 293 -16 230 295 57 9 chr15 18656098 18656203 -82724318 - MIR SINE MIR -113 149 40 211 339 83 0 chr15 18656529 18656638 -82723883 + MIR3 SINE MIR 45 162 -46 2245 217 64 56 chr15 18656671 18656856 -82723665 + MER82 DNA MER2_type 37 219 -434 1991 121 10 0 chr15 18656856 18657146 -82723375 + AluSx SINE Alu 1 293 -19 2420 77 0 3 chr15 18657148 18657460 -82723061 + AluY SINE Alu 1 311 0 2245 217 64 56 chr15 18657460 18657880 -82722641 + MER82 DNA MER2_type 219 650 -3 1946 148 0 0 chr15 18657971 18658262 -82722259 - AluSq SINE Alu -17 296 6 661 149 174 8 chr15 18658266 18658387 -82722134 - AluJo SINE Alu -170 142 2 943 349 3 103 chr15 18658515 18658845 -82721676 - AluSp SINE Alu -6 297 1 332 167 15 0 chr15 18658870 18658936 -82721585 + AluJb SINE Alu 51 117 -185 1470 169 19 19 chr15 18658942 18659255 -82721266 - AluSp SINE Alu 0 313 1 844 85 15 0 chr15 18659261 18659391 -82721130 - AluSp SINE Alu -180 133 2 517 205 8 8 chr15 18659420 18659537 -82720984 + FLAM_C SINE Alu 1 117 -16 1567 141 10 61 chr15 18659548 18659861 -82720660 - AluSp SINE Alu -16 297 1 1308 172 12 86 chr15 18659888 18659999 -82720522 + AluJb SINE Alu 1 119 -183 1371 163 42 0 chr15 18659999 18660161 -82720360 - AluSp SINE Alu -18 295 114 396 0 0 0 chr15 18660161 18660205 -82720316 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1371 163 42 0 chr15 18660205 18660325 -82720196 - AluSp SINE Alu -199 114 1 1308 172 12 86 chr15 18660325 18660539 -82719982 + AluJb SINE Alu 119 302 0 185 250 143 0 chr15 18660794 18660850 -82719671 - MIR SINE MIR -93 169 106 314 216 77 115 chr15 18661115 18661385 -82719136 + L1MC5 LINE L1 7563 7842 -119 2061 110 0 0 chr15 18661385 18661667 -82718854 + AluSq SINE Alu 1 282 -31 212 77 26 0 chr15 18661671 18661710 -82718811 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 314 216 77 115 chr15 18661710 18661800 -82718721 + L1MC5 LINE L1 7845 7914 -47 1842 149 10 0 chr15 18662989 18663290 -82717231 + AluSx SINE Alu 1 304 -8 1434 191 0 0 chr15 18663333 18663579 -82716942 + AluJo SINE Alu 1 246 -66 25 0 0 0 chr15 18664149 18664174 -82716347 + AT_rich Low_complexity Low_complexity 1 25 0 943 161 0 0 chr15 18669104 18669259 -82711262 - 7SLRNA srpRNA srpRNA -71 249 95 371 257 175 6 chr15 18670014 18670190 -82710331 - MIR SINE MIR -6 256 45 1886 130 0 86 chr15 18670203 18670527 -82709994 - AluSx SINE Alu -15 297 2 194 241 22 0 chr15 18671069 18671115 -82709406 - MIR SINE MIR -58 150 103 261 83 0 0 chr15 18671444 18671480 -82709041 + (A)n Simple_repeat Simple_repeat 1 36 0 228 216 39 0 chr15 18671614 18671665 -82708856 - MIR SINE MIR -61 147 95 514 229 141 40 chr15 18672640 18672850 -82707671 - MIR SINE MIR -10 252 16 183 253 120 13 chr15 18673132 18673207 -82707314 - MIR SINE MIR -106 102 20 350 288 76 8 chr15 18674450 18674568 -82705953 - L2 LINE L2 -3 3310 3185 300 314 139 7 chr15 18674587 18674724 -82705797 - MIR3 SINE MIR -23 185 31 388 271 57 62 chr15 18675666 18675858 -82704663 - MIR SINE MIR -70 192 2 211 259 0 19 chr15 18678033 18678087 -82702434 + (TG)n Simple_repeat Simple_repeat 2 54 0 2150 113 0 0 chr15 18678396 18678705 -82701816 + AluY SINE Alu 1 309 0 383 284 121 75 chr15 18678710 18678949 -82701572 - L1MEd LINE L1 -4939 1180 931 870 201 53 0 chr15 18678949 18679118 -82701403 - AluJb SINE Alu -2 310 133 277 214 0 0 chr15 18679129 18679185 -82701336 - MER3 DNA MER1_type -153 56 1 2217 128 3 3 chr15 18679275 18679587 -82700934 + AluJb SINE Alu 1 312 0 471 148 0 0 chr15 18680060 18680148 -82700373 + (TAGA)n Simple_repeat Simple_repeat 1 88 0 211 194 0 0 chr15 18680148 18680184 -82700337 + (CAGAGA)n Simple_repeat Simple_repeat 5 40 0 821 224 30 56 chr15 18680357 18680661 -82699860 + L1MA9 LINE L1 5987 6282 -30 323 275 25 0 chr15 18680825 18680905 -82699616 + L1MC4 LINE L1 6609 6690 -1352 1644 174 20 40 chr15 18680916 18681214 -82699307 + AluJo SINE Alu 1 292 -20 285 238 16 0 chr15 18681443 18681506 -82699015 + MIR SINE MIR 87 150 -112 1599 157 68 14 chr15 18681733 18682013 -82698508 + AluJb SINE Alu 1 295 -17 207 0 0 0 chr15 18682062 18682085 -82698436 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 746 176 8 0 chr15 18682091 18682210 -82698311 - FLAM_C SINE Alu -13 120 1 546 297 44 27 chr15 18682222 18682443 -82698078 - L1M4 LINE L1 -1468 4678 4449 1417 200 28 92 chr15 18682443 18682833 -82697688 - MLT1A1 LTR MaLR 0 365 1 546 297 44 27 chr15 18682833 18682907 -82697614 - L1M4 LINE L1 -1697 4449 4378 910 186 55 90 chr15 18682910 18683222 -82697299 - AluY SINE Alu 0 301 1 1994 146 7 13 chr15 18683759 18684068 -82696453 + AluJb SINE Alu 1 307 -5 201 345 0 0 chr15 18684287 18684342 -82696179 + MIR SINE MIR 21 75 -133 414 342 43 39 chr15 18684857 18685091 -82695430 - L1MC4 LINE L1 -1340 6702 6468 307 300 100 0 chr15 18685085 18685195 -82695326 - L1MC4 LINE L1 -1339 6703 6583 * 367 186 21 0 chr15 18685195 18685292 -82695229 + (CATATA)n Simple_repeat Simple_repeat 5 103 0 1389 122 77 12 chr15 18685318 18685565 -82694956 + L1PA10 LINE L1 5904 6166 -2 337 254 152 57 chr15 18686579 18687148 -82693373 - L1M4 LINE L1 -3311 2835 2196 2126 98 20 23 chr15 18687148 18687453 -82693068 - AluSg SINE Alu 0 310 7 337 254 152 57 chr15 18687453 18687530 -82692991 - L1M4 LINE L1 -3950 2196 2128 1288 74 11 32 chr15 18687819 18688031 -82692490 + AluSg/x SINE Alu 115 312 0 741 241 87 14 chr15 18688058 18688148 -82692373 - AluJo SINE Alu -90 222 140 1967 120 0 20 chr15 18688148 18688447 -82692074 + AluSq SINE Alu 17 309 -4 741 241 87 14 chr15 18688447 18688563 -82691958 - AluJo SINE Alu -172 140 1 1619 133 13 33 chr15 18688591 18688893 -82691628 + AluSp SINE Alu 1 296 -17 584 162 8 17 chr15 18688904 18689021 -82691500 - FLAM_C SINE Alu -26 117 2 1922 96 10 83 chr15 18689029 18689342 -82691179 + AluSx SINE Alu 22 311 -1 1580 167 3 24 chr15 18689354 18689647 -82690874 + AluSp SINE Alu 7 293 -20 243 0 0 0 chr15 18689647 18689674 -82690847 + (GA)n Simple_repeat Simple_repeat 2 28 0 776 220 13 48 chr15 18689701 18689814 -82690707 - AluJo SINE Alu -92 220 117 1790 138 0 47 chr15 18689814 18690132 -82690389 + AluSp SINE Alu 1 303 -10 776 220 13 48 chr15 18690132 18690245 -82690276 - AluJo SINE Alu -195 117 2 1752 183 49 16 chr15 18690249 18690637 -82689884 - LTR15 LTR ERV1 -92 401 1 229 269 60 0 chr15 18691255 18691322 -82689199 + L2 LINE L2 2204 2274 -1040 898 317 166 9 chr15 18691498 18692112 -82688409 + L2 LINE L2 2353 3062 -251 2331 74 3 7 chr15 18692849 18693148 -82687373 + AluY SINE Alu 1 298 -13 243 221 130 0 chr15 18693165 18693242 -82687279 + L1M4 LINE L1 4750 4836 -1310 624 293 25 37 chr15 18693739 18694060 -82686461 - L1MC4 LINE L1 -1 8041 7725 714 192 103 0 chr15 18694290 18694446 -82686075 - MER5A DNA MER1_type -2 187 16 2145 117 3 0 chr15 18694637 18694976 -82685545 + AluSx SINE Alu 1 340 0 330 269 52 28 chr15 18695632 18695893 -82684628 - L1P5 LINE L1 -711 5443 5174 1463 186 37 15 chr15 18696002 18696271 -82684250 - AluJo SINE Alu -37 275 1 793 151 68 14 chr15 18697016 18697162 -82683359 - MER5A DNA MER1_type -33 156 3 603 51 0 0 chr15 18697548 18697627 -82682894 + (TG)n Simple_repeat Simple_repeat 2 80 0 2062 125 3 10 chr15 18697628 18697916 -82682605 - AluSx SINE Alu -26 286 1 222 250 0 0 chr15 18698441 18698529 -82681992 + C-rich Low_complexity Low_complexity 2 89 0 410 301 66 0 chr15 18700468 18700604 -82679917 + MIR SINE MIR 48 192 -70 279 254 105 26 chr15 18700741 18700855 -82679666 + L2 LINE L2 3188 3310 -3 528 234 188 20 chr15 18702456 18702653 -82677868 + MIR SINE MIR 23 252 -10 2153 133 10 0 chr15 18702788 18703097 -82677424 + AluSp SINE Alu 1 312 -1 226 317 195 0 chr15 18703456 18703579 -82676942 + MIR3 SINE MIR 53 199 -9 186 340 113 0 chr15 18703921 18704027 -82676494 + MER5A DNA MER1_type 24 141 -48 2327 67 0 3 chr15 18704063 18704385 -82676136 - AluY SINE Alu 0 321 1 533 298 1 23 chr15 18704588 18705692 -82674829 + GA-rich Low_complexity Low_complexity 1 1079 0 27 0 0 0 chr15 18706498 18706525 -82673996 + AT_rich Low_complexity Low_complexity 1 27 0 1980 95 106 0 chr15 18706538 18706802 -82673719 + AluSx SINE Alu 1 292 -20 1770 149 49 14 chr15 18707430 18707718 -82672803 - AluSx SINE Alu -14 298 1 466 244 47 17 chr15 18707738 18707910 -82672611 - L1ME2 LINE L1 -2 6162 5986 289 309 59 59 chr15 18709061 18709265 -82671256 + MLT1L LTR MaLR 5 208 -407 416 256 64 0 chr15 18711479 18711604 -82668917 - MIR3 SINE MIR -34 174 42 379 298 159 7 chr15 18712449 18712600 -82667921 - MER5A DNA MER1_type -15 174 1 288 239 119 15 chr15 18712631 18712765 -82667756 - MIR SINE MIR -94 168 21 2232 129 3 0 chr15 18714286 18714595 -82665926 + AluSx SINE Alu 1 310 -2 358 78 0 0 chr15 18714810 18714861 -82665660 + Alu SINE Alu 2 52 -248 23 33 0 0 chr15 18715353 18715383 -82665138 + AT_rich Low_complexity Low_complexity 1 30 0 2047 141 0 3 chr15 18716068 18716351 -82664170 + AluSx SINE Alu 1 282 -30 189 0 0 0 chr15 18716394 18716415 -82664106 + (A)n Simple_repeat Simple_repeat 1 21 0 1015 227 3 43 chr15 18716419 18716459 -82664062 - Charlie5 DNA MER1_type -69 2555 2515 1983 123 3 69 chr15 18716459 18716777 -82663744 + AluSx SINE Alu 1 297 -15 1015 227 3 43 chr15 18716777 18717084 -82663437 - Charlie5 DNA MER1_type -109 2515 2222 254 115 0 138 chr15 18717854 18717941 -82662580 + (CACCC)n Simple_repeat Simple_repeat 4 78 0 2284 124 0 0 chr15 18718703 18719010 -82661511 + AluSx SINE Alu 1 307 -5 2181 139 3 0 chr15 18719033 18719342 -82661179 + AluSp SINE Alu 1 310 -3 766 288 105 24 chr15 18719877 18720087 -82660434 + L1ME2 LINE L1 5502 5694 -470 1842 161 13 3 chr15 18720087 18720392 -82660129 + AluJo SINE Alu 3 310 -2 766 288 105 24 chr15 18720392 18720601 -82659920 + L1ME2 LINE L1 5694 5955 -209 1662 141 92 0 chr15 18721692 18721954 -82658567 + AluJb SINE Alu 9 294 -18 1322 106 106 0 chr15 18722937 18723145 -82657376 - MER30 DNA MER1_type 0 230 1 320 238 133 0 chr15 18724115 18724220 -82656301 + L1M4 LINE L1 2568 2686 -3460 2345 71 0 49 chr15 18724222 18724530 -82655991 - AluY SINE Alu -18 293 1 318 193 53 26 chr15 18724530 18724551 -82655970 + (CATATA)n Simple_repeat Simple_repeat 4 23 -97 2058 87 0 18 chr15 18724551 18724826 -82655695 - AluY SINE Alu -11 300 31 318 193 53 26 chr15 18724826 18724918 -82655603 + (CATATA)n Simple_repeat Simple_repeat 23 120 0 2127 225 56 56 chr15 18724918 18725119 -82655402 + L1M4 LINE L1 2675 2875 -3271 2014 122 0 10 chr15 18725119 18725414 -82655107 + AluSq SINE Alu 1 292 -21 2127 225 56 56 chr15 18725414 18726033 -82654488 + L1M4 LINE L1 2870 3496 -2646 1671 183 31 0 chr15 18726033 18726322 -82654199 - AluJb SINE Alu -14 298 1 740 252 141 27 chr15 18726322 18726655 -82653866 - L1ME3 LINE L1 -107 6055 5685 288 196 0 0 chr15 18727191 18727237 -82653284 - AluY SINE Alu -253 46 1 2090 112 10 0 chr15 18727266 18727562 -82652959 + AluSq SINE Alu 6 304 -9 1703 159 4 0 chr15 18727590 18727860 -82652661 - AluJb SINE Alu -9 303 33 344 294 12 28 chr15 18728070 18728286 -82652235 + CT-rich Low_complexity Low_complexity 1 212 0 265 366 7 18 chr15 18728479 18728739 -82651782 + C-rich Low_complexity Low_complexity 1 257 0 2472 47 7 0 chr15 18729419 18729716 -82650805 + AluY SINE Alu 1 299 -12 976 253 25 8 chr15 18729751 18729988 -82650533 + MLT1H1 LTR MaLR 291 531 -24 225 94 0 0 chr15 18729988 18730020 -82650501 + (T)n Simple_repeat Simple_repeat 1 32 0 931 108 7 0 chr15 18730120 18730259 -82650262 - L1P4 LINE L1 -676 5485 5346 1071 138 0 6 chr15 18730259 18730432 -82650089 + L1PA13 LINE L1 5991 6163 0 693 276 22 41 chr15 18730438 18730740 -82649781 + L2 LINE L2 2736 3036 -277 1379 304 55 21 chr15 18730761 18731002 -82649519 + MLT1H1 LTR MaLR 1 233 -322 2462 51 7 0 chr15 18731002 18731297 -82649224 + AluY SINE Alu 1 297 -14 1379 304 55 21 chr15 18731297 18731569 -82648952 + MLT1H1 LTR MaLR 233 531 -24 22 0 0 0 chr15 18731580 18731602 -82648919 + AT_rich Low_complexity Low_complexity 1 22 0 2247 72 0 17 chr15 18731714 18732004 -82648517 + AluY SINE Alu 18 302 -9 276 105 0 0 chr15 18732009 18732047 -82648474 - tRNA-Phe-TTC tRNA tRNA -38 38 1 364 309 134 28 chr15 18732871 18732953 -82647568 + L1MC4a LINE L1 5856 5928 -1880 2155 118 3 3 chr15 18732953 18733266 -82647255 + AluSq SINE Alu 1 313 0 364 309 134 28 chr15 18733266 18733474 -82647047 + L1MC4a LINE L1 5928 6177 -1631 6465 175 45 23 chr15 18733769 18734540 -82645981 - L1 LINE L1 -1984 4162 3345 2031 148 0 7 chr15 18734540 18734845 -82645676 - AluSx SINE Alu -9 303 1 6465 175 45 23 chr15 18734845 18735441 -82645080 - L1 LINE L1 -2801 3345 2764 * 7666 153 20 8 chr15 18735433 18736754 -82643767 - L1 LINE L1 -1158 4988 3652 1838 213 38 27 chr15 18736754 18737233 -82643288 - L1 LINE L1 -3384 2762 2279 1147 205 139 13 chr15 18737247 18737550 -82642971 + MLT1E1 LTR MaLR 305 645 -9 737 191 8 15 chr15 18737742 18737873 -82642648 + AluJo SINE Alu 12 141 -171 1784 150 18 3 chr15 18737875 18738161 -82642360 + AluJb SINE Alu 1 290 -22 52 0 0 0 chr15 18738161 18738213 -82642308 + AT_rich Low_complexity Low_complexity 1 52 0 2230 113 3 3 chr15 18738506 18738808 -82641713 + AluY SINE Alu 1 302 -9 806 160 0 0 chr15 18738916 18739041 -82641480 + FLAM_C SINE Alu 1 125 -18 2051 98 61 0 chr15 18739340 18739617 -82640904 - AluSc SINE Alu -15 294 1 2229 106 7 0 chr15 18739648 18739940 -82640581 - AluSx SINE Alu -18 294 1 810 260 56 86 chr15 18740048 18740479 -82640042 + L1MD1 LINE L1 5825 6242 0 2293 78 17 3 chr15 18740898 18741193 -82639328 + AluSx SINE Alu 1 299 -13 2032 100 21 21 chr15 18741862 18742152 -82638369 + AluSx SINE Alu 1 290 -22 2161 105 17 3 chr15 18742667 18742962 -82637559 - AluSq SINE Alu -14 299 1 191 188 21 0 chr15 18744145 18744193 -82636328 + GA-rich Low_complexity Low_complexity 1 49 0 35 88 0 0 chr15 18744518 18744609 -82635912 + GC_rich Low_complexity Low_complexity 1 91 0 25 31 0 0 chr15 18744638 18744670 -82635851 + GC_rich Low_complexity Low_complexity 1 32 0 1633 133 48 44 chr15 18745266 18745560 -82634961 + AluJo SINE Alu 1 295 -17 2112 93 0 0 chr15 18745564 18745832 -82634689 + AluSx SINE Alu 1 268 -44 1451 152 13 0 chr15 18745839 18746063 -82634458 - AluJb SINE Alu -85 227 1 2189 117 3 3 chr15 18746286 18746593 -82633928 + AluSp SINE Alu 1 307 -6 267 158 0 0 chr15 18746667 18746705 -82633816 + Alu SINE Alu 6 43 -260 1379 167 40 0 chr15 18746705 18746927 -82633594 - AluJo SINE Alu -81 231 1 1622 240 112 14 chr15 18746927 18747443 -82633078 - L1ME3 LINE L1 -107 6055 5489 1827 108 35 0 chr15 18748572 18748830 -82631691 - AluSq SINE Alu -11 302 36 1484 61 0 0 chr15 18748835 18749015 -82631506 - AluY SINE Alu -13 298 119 1110 92 7 7 chr15 18749119 18749271 -82631250 - AluY SINE Alu -159 152 1 2310 78 0 0 chr15 18749398 18749702 -82630819 + AluY SINE Alu 1 304 0 6915 124 25 43 chr15 18750162 18750195 -82630326 + THE1B-int LTR MaLR 458 490 -1090 2292 68 23 16 chr15 18750195 18750503 -82630018 + AluY SINE Alu 1 310 -1 6915 124 25 43 chr15 18750503 18751612 -82628909 + THE1B-int LTR MaLR 490 1580 0 2579 109 8 16 chr15 18751612 18751979 -82628542 + THE1B LTR MaLR 1 364 0 49 71 0 0 chr15 18752970 18753068 -82627453 + AT_rich Low_complexity Low_complexity 1 98 0 564 258 40 36 chr15 18753218 18753443 -82627078 + L2 LINE L2 2511 2736 -578 2338 110 33 0 chr15 18753453 18753789 -82626732 - L1PA13 LINE L1 -189 5974 5628 2649 16 3 0 chr15 18753889 18754306 -82626215 + L1P1 LINE L1 5144 5561 -594 * 6373 169 47 23 chr15 18754302 18755038 -82625483 - L1 LINE L1 -2019 4127 3343 2164 135 0 3 chr15 18755038 18755342 -82625179 - AluSx SINE Alu -9 303 1 6373 169 47 23 chr15 18755342 18755937 -82624584 - L1 LINE L1 -2803 3343 2764 * 7841 151 17 7 chr15 18755929 18757252 -82623269 - L1 LINE L1 -1158 4988 3652 1855 217 35 27 chr15 18757252 18757731 -82622790 - L1 LINE L1 -3384 2762 2280 1137 202 129 14 chr15 18757762 18758049 -82622472 + MLT1E1 LTR MaLR 326 645 -9 729 200 21 14 chr15 18758230 18758370 -82622151 + AluJo SINE Alu 1 141 -171 1760 160 17 3 chr15 18758372 18758659 -82621862 + AluJb SINE Alu 1 291 -21 51 0 0 0 chr15 18758659 18758710 -82621811 + AT_rich Low_complexity Low_complexity 1 51 0 1225 167 84 4 chr15 18759003 18759278 -82621243 + AluY SINE Alu 1 297 -14 1457 202 26 0 chr15 18760074 18760346 -82620175 + AluJo SINE Alu 1 279 -33 188 86 29 0 chr15 18760348 18760383 -82620138 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 183 186 43 43 chr15 18760685 18760755 -82619766 - MIR SINE MIR -81 127 58 2129 47 98 7 chr15 18760915 18761190 -82619331 - AluY SINE Alu -11 300 1 248 157 20 0 chr15 18762175 18762226 -82618295 + MER41B LTR ERV1 483 534 -101 435 202 43 40 chr15 18762241 18762298 -82618223 + MER58B DNA MER1_type 70 125 -2295 2252 95 3 20 chr15 18762298 18762602 -82617919 + AluSg SINE Alu 1 299 -11 435 202 43 40 chr15 18762602 18762776 -82617745 + MER58B DNA MER1_type 125 340 -1 975 94 23 0 chr15 18763238 18763366 -82617155 + AluSg SINE Alu 1 131 -179 1229 150 0 0 chr15 18763783 18763970 -82616551 + AluSg SINE Alu 119 305 -5 747 180 0 0 chr15 18764080 18764208 -82616313 + FLAM_C SINE Alu 1 128 -5 2130 80 62 0 chr15 18764504 18764780 -82615741 - AluSc SINE Alu -16 293 1 2207 107 7 0 chr15 18764820 18765111 -82615410 - AluSx SINE Alu -19 293 1 865 254 58 86 chr15 18765219 18765649 -82614872 + L1MD1 LINE L1 5825 6242 0 2092 107 17 3 chr15 18766067 18766358 -82614163 + AluSx SINE Alu 1 295 -17 2179 99 20 16 chr15 18767026 18767330 -82613191 + AluSx SINE Alu 1 305 -7 2258 92 10 0 chr15 18767844 18768136 -82612385 - AluSq SINE Alu -18 295 1 21 36 0 0 chr15 18768461 18768489 -82612032 + AT_rich Low_complexity Low_complexity 1 28 0 303 270 30 10 chr15 18769255 18769355 -82611166 + GA-rich Low_complexity Low_complexity 2 103 0 197 176 0 70 chr15 18769355 18769497 -82611024 + (CCCCG)n Simple_repeat Simple_repeat 2 133 0 60 15 0 0 chr15 18769497 18769564 -82610957 + GC_rich Low_complexity Low_complexity 1 67 0 223 135 40 63 chr15 18769597 18769723 -82610798 + CT-rich Low_complexity Low_complexity 2 124 0 2313 67 0 0 chr15 18770517 18770821 -82609700 - AluY SINE Alu 0 304 1 2409 93 0 0 chr15 18771581 18771883 -82608638 - AluY SINE Alu -9 302 1 303 98 0 0 chr15 18771917 18771958 -82608563 + MIR3 SINE MIR 147 187 -21 285 222 0 0 chr15 18771918 18771972 -82608549 + L3 LINE CR1 1521 1574 -3 * 1492 248 81 27 chr15 18772808 18773251 -82607270 + MLT1C LTR MaLR 1 467 0 2395 68 0 0 chr15 18775861 18776157 -82604364 + AluY SINE Alu 1 296 -15 594 278 130 40 chr15 18776565 18776918 -82603603 - L1ME3A LINE L1 -4 6166 5782 640 262 179 19 chr15 18776920 18777183 -82603338 - L1ME3A LINE L1 -428 5734 5430 265 178 0 0 chr15 18777713 18777758 -82602763 - AluJb SINE Alu -9 293 249 679 187 0 0 chr15 18777794 18777901 -82602620 - AluJb SINE Alu -70 242 136 302 252 16 106 chr15 18778080 18778203 -82602318 + MIR SINE MIR 47 158 -104 776 274 55 30 chr15 18778216 18778544 -82601977 - LTR16B LTR ERVL 0 464 129 239 0 32 0 chr15 18778624 18778655 -82601866 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 5825 70 5 4 chr15 18778656 18779414 -82601107 - L1PA7 LINE L1 -13 6141 5383 207 0 0 0 chr15 18779632 18779655 -82600866 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 270 81 0 0 chr15 18779654 18779691 -82600830 + (TA)n Simple_repeat Simple_repeat 2 38 0 2620 49 0 0 chr15 18779940 18780244 -82600277 - AluY SINE Alu -7 304 1 2393 39 4 0 chr15 18780674 18780992 -82599529 + AluY SINE Alu 1 319 0 1130 158 11 5 chr15 18780995 18781185 -82599336 - L1PB3 LINE L1 -5 6149 5959 231 318 73 27 chr15 18781710 18781820 -82598701 + L2 LINE L2 3158 3272 0 184 70 70 18 chr15 18782074 18782131 -82598390 + (TA)n Simple_repeat Simple_repeat 1 60 0 443 137 32 55 chr15 18782404 18782877 -82597644 + (TA)n Simple_repeat Simple_repeat 1 462 0 405 141 33 56 chr15 18782879 18783156 -82597365 + (TATATG)n Simple_repeat Simple_repeat 1 270 0 210 133 40 46 chr15 18783167 18783340 -82597181 + (TA)n Simple_repeat Simple_repeat 1 172 0 24 67 0 0 chr15 18784597 18784642 -82595879 + AT_rich Low_complexity Low_complexity 1 45 0 299 232 52 45 chr15 18785308 18785463 -82595058 + Charlie7 DNA MER1_type 2421 2576 -36 2475 58 6 13 chr15 18786014 18786325 -82594196 - AluSp SINE Alu -4 309 1 22 35 0 0 chr15 18786568 18786597 -82593924 + AT_rich Low_complexity Low_complexity 1 29 0 997 320 120 35 chr15 18786855 18787387 -82593134 - L2 LINE L2 0 3313 2828 2205 118 0 0 chr15 18787387 18787691 -82592830 + AluSx SINE Alu 1 304 -8 997 320 120 35 chr15 18787691 18788199 -82592322 - L2 LINE L2 -485 2828 2180 707 89 0 20 chr15 18788404 18788505 -82592016 + AluSc SINE Alu 202 300 -9 348 313 32 47 chr15 18788620 18788898 -82591623 - L1ME4a LINE L1 -140 5981 5708 261 0 0 0 chr15 18789337 18789366 -82591155 + (A)n Simple_repeat Simple_repeat 1 29 0 297 0 0 0 chr15 18790575 18790608 -82589913 + (CA)n Simple_repeat Simple_repeat 2 34 0 2280 57 0 0 chr15 18791577 18791889 -82588632 - AluY SINE Alu 0 312 1 26 30 0 0 chr15 18792031 18792064 -82588457 + AT_rich Low_complexity Low_complexity 1 33 0 1693 167 0 44 chr15 18792583 18792901 -82587620 + AluJb SINE Alu 9 312 0 255 345 0 0 chr15 18793274 18793358 -82587163 - L2 LINE L2 0 3313 3230 273 262 24 12 chr15 18793462 18793546 -82586975 - L2 LINE L2 -1 3312 3228 2435 76 0 0 chr15 18793898 18794201 -82586320 + AluY SINE Alu 1 303 -8 25 31 0 0 chr15 18794233 18794265 -82586256 + AT_rich Low_complexity Low_complexity 1 32 0 235 143 18 0 chr15 18794734 18794790 -82585731 + C-rich Low_complexity Low_complexity 3 59 0 324 261 101 138 chr15 18795418 18796068 -82584453 + L1M2 LINE L1 451 1450 -5399 871 130 0 0 chr15 18799616 18799739 -82580782 + AluSg/x SINE Alu 172 294 -18 227 200 29 29 chr15 18799963 18800033 -82580488 + L1MC5 LINE L1 7856 7925 -36 5371 211 69 83 chr15 18800900 18801469 -82579052 + L1MDa LINE L1 831 1406 -5134 1937 120 4 0 chr15 18801469 18801744 -82578777 + AluSg SINE Alu 1 276 -34 5371 211 69 83 chr15 18801744 18802684 -82577837 + L1MDa LINE L1 1406 2358 -4182 1763 158 83 9 chr15 18802684 18803020 -82577501 - MER46B DNA MER2_type 0 236 1 5371 211 69 83 chr15 18803020 18803458 -82577063 + L1MDa LINE L1 2358 2801 -3739 2214 108 26 7 chr15 18803458 18803765 -82576756 + AluSq SINE Alu 1 313 0 5371 211 69 83 chr15 18803765 18805465 -82575056 + L1MDa LINE L1 2801 4422 -2118 273 311 126 0 chr15 18806383 18806502 -82574019 - MIR SINE MIR 0 262 129 2247 93 13 3 chr15 18806537 18806839 -82573682 - AluY SINE Alu -6 305 1 193 366 183 0 chr15 18806841 18806934 -82573587 - MIR SINE MIR -113 149 40 1822 91 14 47 chr15 18807094 18807370 -82573151 + AluSp SINE Alu 34 300 -13 1922 132 0 35 chr15 18807372 18807682 -82572839 + AluSq SINE Alu 1 299 -14 335 321 38 24 chr15 18807715 18807927 -82572594 + L1MEc LINE L1 1850 2064 -4332 849 245 144 25 chr15 18807936 18808304 -82572217 + L1MEc LINE L1 2215 2626 -3589 411 167 0 0 chr15 18809120 18809180 -82571341 - AluS SINE Alu -19 290 231 1239 121 0 0 chr15 18809182 18809347 -82571174 - AluSq SINE Alu -148 165 1 2124 194 84 20 chr15 18809347 18809905 -82570616 + L1MEc LINE L1 2752 3345 -2870 271 309 31 0 chr15 18809948 18810045 -82570476 - MIR SINE MIR -22 240 141 805 209 26 13 chr15 18810053 18810206 -82570315 - FRAM SINE Alu -21 155 1 1318 90 0 0 chr15 18810571 18810738 -82569783 + AluY SINE Alu 131 297 -14 2393 101 0 3 chr15 18810762 18811070 -82569451 + AluSq SINE Alu 1 307 -6 1425 173 43 18 chr15 18811073 18811350 -82569171 + L1M3 LINE L1 5325 5608 -572 663 229 0 0 chr15 18811351 18811469 -82569052 + FLAM_C SINE Alu 2 119 -24 722 108 0 0 chr15 18811479 18811581 -82568940 + L1MB3 LINE L1 6074 6175 -8 25 31 0 0 chr15 18811581 18811613 -82568908 + AT_rich Low_complexity Low_complexity 1 32 0 2603 59 0 0 chr15 18812028 18812332 -82568189 + AluY SINE Alu 1 304 -7 443 241 73 7 chr15 18812905 18813042 -82567479 - MER21B LTR ERV1 -57 806 661 581 220 16 44 chr15 18813046 18813228 -82567293 + L1MDa LINE L1 1543 1719 -4821 2057 162 117 5 chr15 18813273 18813700 -82566821 + LTR53 LTR ERVL 5 479 -40 825 222 57 4 chr15 18813773 18814003 -82566518 + L1ME2 LINE L1 5323 5564 -2431 902 248 17 111 chr15 18814156 18814262 -82566259 + MER58B DNA MER1_type 3 117 -2303 1687 79 8 75 chr15 18814262 18814514 -82566007 - AluSx SINE Alu -77 235 1 902 248 17 111 chr15 18814514 18814779 -82565742 + MER58B DNA MER1_type 117 339 -2 2021 149 0 0 chr15 18815010 18815312 -82565209 + AluSg1 SINE Alu 1 302 -7 21 0 0 0 chr15 18815504 18815525 -82564996 + AT_rich Low_complexity Low_complexity 1 21 0 792 237 118 28 chr15 18816382 18816669 -82563852 + L1ME2 LINE L1 5851 6163 -1 306 0 0 0 chr15 18816822 18816856 -82563665 + (TG)n Simple_repeat Simple_repeat 1 34 0 28 0 0 0 chr15 18816870 18816898 -82563623 + AT_rich Low_complexity Low_complexity 1 28 0 2250 114 0 3 chr15 18816961 18817269 -82563252 - AluSx SINE Alu -2 310 4 878 106 8 0 chr15 18817447 18817579 -82562942 - AluSp SINE Alu -180 133 1 843 219 60 33 chr15 18817608 18817732 -82562789 + AluJo SINE Alu 2 136 -176 1873 118 0 21 chr15 18817732 18818020 -82562501 - AluSq SINE Alu -15 298 17 843 219 60 33 chr15 18818020 18818110 -82562411 + AluJo SINE Alu 136 222 -90 1381 60 11 11 chr15 18818167 18818349 -82562172 - AluSg/x SINE Alu -16 294 113 506 240 150 61 chr15 18818551 18818715 -82561806 + L1MDa LINE L1 2469 2617 -3923 2067 102 20 23 chr15 18818715 18819020 -82561501 + AluSg SINE Alu 7 310 0 506 240 150 61 chr15 18819020 18819589 -82560932 + L1MDa LINE L1 2617 3229 -3311 523 302 0 23 chr15 18819774 18820268 -82560253 + CT-rich Low_complexity Low_complexity 1 482 0 2345 68 0 0 chr15 18820457 18820774 -82559747 + AluY SINE Alu 1 317 0 183 340 113 0 chr15 18820810 18820916 -82559605 - MER5A DNA MER1_type -48 141 24 195 317 195 0 chr15 18821258 18821381 -82559140 - MIR3 SINE MIR -9 199 53 2114 130 10 0 chr15 18821728 18822040 -82558481 - AluSp SINE Alu -2 311 1 512 238 192 21 chr15 18822179 18822372 -82558149 - MIR SINE MIR -14 248 23 270 254 105 26 chr15 18823973 18824087 -82556434 - L2 LINE L2 -3 3310 3188 410 301 66 0 chr15 18824224 18824360 -82556161 - MIR SINE MIR -70 192 48 222 250 0 0 chr15 18826299 18826387 -82554134 + G-rich Low_complexity Low_complexity 2 89 0 1892 132 3 10 chr15 18826911 18827199 -82553322 + AluSx SINE Alu 1 286 -26 438 53 0 0 chr15 18827200 18827257 -82553264 + (CA)n Simple_repeat Simple_repeat 2 58 0 790 151 68 14 chr15 18827643 18827789 -82552732 + MER5A DNA MER1_type 3 156 -33 1326 186 37 15 chr15 18828534 18828803 -82551718 + AluJo SINE Alu 1 275 -37 352 248 106 33 chr15 18828912 18829259 -82551262 + L1P2 LINE L1 5174 5565 -589 2006 117 3 0 chr15 18829830 18830176 -82550345 - AluSx SINE Alu 0 347 1 717 186 103 0 chr15 18830367 18830523 -82549998 + MER5A DNA MER1_type 16 187 -2 669 293 25 37 chr15 18830753 18831074 -82549447 + L1MC4 LINE L1 7725 8041 -1 262 221 130 0 chr15 18831571 18831648 -82548873 - L1M4 LINE L1 -1310 4836 4750 2206 74 3 7 chr15 18831665 18831964 -82548557 - AluY SINE Alu -13 298 1 851 318 165 14 chr15 18832694 18833316 -82547205 - L2 LINE L2 -245 3068 2353 233 269 60 0 chr15 18833492 18833559 -82546962 - L2 LINE L2 -1040 2274 2204 1843 186 49 13 chr15 18834177 18834564 -82545957 + LTR15 LTR ERV1 1 401 -92 738 220 13 48 chr15 18834568 18834681 -82545840 + AluJo SINE Alu 2 105 -207 1634 141 0 50 chr15 18834681 18835000 -82545521 - AluSp SINE Alu -10 303 1 738 220 13 48 chr15 18835000 18835113 -82545408 + AluJo SINE Alu 105 220 -92 252 33 0 0 chr15 18835115 18835145 -82545376 + AluJb SINE Alu 88 117 -185 1449 175 3 20 chr15 18835156 18835453 -82545068 - AluSp SINE Alu -15 298 7 1121 113 0 59 chr15 18835465 18835668 -82544853 - AluSg/x SINE Alu -1 311 121 2353 74 0 10 chr15 18886109 18886406 -82494115 - AluY SINE Alu -13 298 5 24 0 0 0 chr15 18886413 18886437 -82494084 + AT_rich Low_complexity Low_complexity 1 24 0 2130 133 0 0 chr15 18886508 18886802 -82493719 + AluJb SINE Alu 1 294 -18 2322 100 0 3 chr15 18886921 18887221 -82493300 + AluSx SINE Alu 1 299 -13 2322 109 3 0 chr15 18887225 18887537 -82492984 + AluSp SINE Alu 1 313 0 2087 138 0 0 chr15 18887697 18887993 -82492528 - AluSx SINE Alu -16 296 1 2131 105 10 0 chr15 18888022 18888318 -82492203 + AluSq SINE Alu 6 304 -9 448 257 37 39 chr15 18888320 18888346 -82492175 - L1M4 LINE L1 -3749 2633 2608 1908 162 3 0 chr15 18888346 18888648 -82491873 - AluJb SINE Alu -9 303 1 448 257 37 39 chr15 18888648 18888832 -82491689 - L1M4 LINE L1 -3774 2608 2421 2137 120 3 3 chr15 18888834 18889135 -82491386 - AluSp SINE Alu -12 301 1 1451 152 13 0 chr15 18889358 18889582 -82490939 + AluJb SINE Alu 1 227 -85 2112 93 0 0 chr15 18889589 18889857 -82490664 - AluSx SINE Alu -44 268 1 1720 135 0 75 chr15 18889861 18890180 -82490341 - AluJo SINE Alu -17 295 1 35 88 0 0 chr15 18890837 18890928 -82489593 + GC_rich Low_complexity Low_complexity 1 91 0 191 188 21 0 chr15 18891256 18891304 -82489217 + CT-rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr15 18892126 18892154 -82488367 + AT_rich Low_complexity Low_complexity 1 28 0 2258 92 10 0 chr15 18892479 18892771 -82487750 + AluSq SINE Alu 1 295 -18 2209 95 20 16 chr15 18893285 18893589 -82486932 - AluSx SINE Alu -7 305 1 2083 107 17 3 chr15 18894257 18894547 -82485974 - AluSx SINE Alu -18 294 1 882 251 58 86 chr15 18894965 18895395 -82485126 - L1MD1 LINE L1 0 6242 5825 2207 107 7 0 chr15 18895503 18895794 -82484727 + AluSx SINE Alu 1 293 -19 2130 80 62 0 chr15 18895834 18896110 -82484411 + AluSc SINE Alu 1 293 -16 747 180 0 0 chr15 18896406 18896534 -82483987 - FLAM_C SINE Alu -5 128 1 1229 150 0 0 chr15 18896644 18896831 -82483690 - AluSg SINE Alu -5 305 119 975 94 23 0 chr15 18897249 18897377 -82483144 - AluSg SINE Alu -179 131 1 435 202 43 40 chr15 18897839 18898013 -82482508 - MER58B DNA MER1_type -2080 340 125 2244 96 3 20 chr15 18898013 18898316 -82482205 - AluSg SINE Alu -12 298 1 435 202 43 40 chr15 18898316 18898373 -82482148 - MER58B DNA MER1_type -2295 125 70 248 157 20 0 chr15 18898388 18898439 -82482082 - MER41A LTR ERV1 -101 453 402 2166 43 98 7 chr15 18899424 18899700 -82480821 + AluY SINE Alu 1 301 -10 183 186 43 43 chr15 18899860 18899930 -82480591 + MIR SINE MIR 58 127 -81 188 86 29 0 chr15 18900232 18900267 -82480254 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 1457 202 26 0 chr15 18900269 18900541 -82479980 - AluJo SINE Alu -33 279 1 190 350 17 8 chr15 18901134 18901254 -82479267 + L2 LINE L2 2164 2284 -1030 2008 140 3 3 chr15 18901410 18901710 -82478811 - AluJb SINE Alu -12 300 1 2231 120 0 0 chr15 18901789 18902098 -82478423 - AluY SINE Alu -2 309 1 51 0 0 0 chr15 18902391 18902442 -82478079 + AT_rich Low_complexity Low_complexity 1 51 0 1760 160 17 3 chr15 18902442 18902729 -82477792 - AluJb SINE Alu -21 291 1 729 200 21 14 chr15 18902731 18902871 -82477650 - AluJo SINE Alu -171 141 1 1137 202 129 14 chr15 18903052 18903339 -82477182 - MLT1E1 LTR MaLR -9 645 326 1855 217 35 27 chr15 18903370 18903849 -82476672 + L1MA3 LINE L1 2280 2762 -3384 7841 151 17 7 chr15 18903849 18905172 -82475349 + L1 LINE L1 3652 4988 -1158 6397 169 47 23 chr15 18905164 18905759 -82474762 + L1MA3 LINE L1 2764 3344 -2802 * 2164 135 0 3 chr15 18905759 18906063 -82474458 + AluSx SINE Alu 1 303 -9 6397 169 47 23 chr15 18906063 18906800 -82473721 + L1MA3 LINE L1 3344 4127 -2019 5266 22 2 3 chr15 18906796 18907590 -82472931 - L1PA2 LINE L1 -594 5561 4770 * 5382 15 0 8 chr15 18907590 18908184 -82472337 + L1PA2 LINE L1 5553 6155 0 6106 146 16 40 chr15 18908191 18908230 -82472291 + L1MA3 LINE L1 4124 4162 -2143 2189 133 13 0 chr15 18908230 18908538 -82471983 + AluSx SINE Alu 1 312 0 6106 146 16 40 chr15 18908538 18908701 -82471820 + L1MA3 LINE L1 4162 4327 -1978 2387 101 0 0 chr15 18908701 18909009 -82471512 - AluSx SINE Alu -4 308 1 6106 146 16 40 chr15 18909009 18910795 -82469726 + L1MA3 LINE L1 4327 6059 -246 2170 119 3 0 chr15 18910795 18911090 -82469431 + AluSc SINE Alu 1 296 -13 429 70 0 0 chr15 18911111 18911168 -82469353 + (TA)n Simple_repeat Simple_repeat 1 57 0 22 0 0 0 chr15 18911408 18911430 -82469091 + AT_rich Low_complexity Low_complexity 1 22 0 2187 128 0 0 chr15 18911464 18911761 -82468760 - AluSx SINE Alu -15 297 1 471 270 138 6 chr15 18911794 18911953 -82468568 - L1MD3 LINE L1 -1153 6842 6663 2170 125 3 6 chr15 18912040 18912353 -82468168 - AluSx SINE Alu 0 312 1 25 51 0 0 chr15 18912472 18912511 -82468010 + AT_rich Low_complexity Low_complexity 1 39 0 390 300 144 34 chr15 18912542 18912812 -82467709 - L1MC4a LINE L1 -1561 6247 5928 2171 115 3 3 chr15 18912812 18913125 -82467396 - AluSq SINE Alu 0 313 1 390 300 144 34 chr15 18913125 18913207 -82467314 - L1MC4a LINE L1 -1880 5928 5856 276 105 0 0 chr15 18914031 18914069 -82466452 + tRNA-Phe-TTC tRNA tRNA 1 38 -38 2367 75 0 16 chr15 18914074 18914380 -82466141 - AluY SINE Alu -9 302 2 2266 114 0 3 chr15 18914443 18914751 -82465770 + AluSx SINE Alu 4 310 -2 28 0 0 0 chr15 18914814 18914842 -82465679 + AT_rich Low_complexity Low_complexity 1 28 0 273 29 0 0 chr15 18914855 18914889 -82465632 + (CA)n Simple_repeat Simple_repeat 1 34 0 798 233 118 28 chr15 18915042 18915329 -82465192 - L1ME2 LINE L1 -1 6163 5851 2039 149 0 0 chr15 18916398 18916700 -82463821 - AluSg1 SINE Alu -7 302 1 895 248 17 111 chr15 18916932 18917197 -82463324 - MER58B DNA MER1_type -2081 339 117 1710 79 8 75 chr15 18917197 18917449 -82463072 + AluSx SINE Alu 1 235 -77 895 248 17 111 chr15 18917449 18917555 -82462966 - MER58B DNA MER1_type -2303 117 3 813 222 57 4 chr15 18917707 18917937 -82462584 - L1ME2 LINE L1 -2431 5564 5323 2073 164 117 5 chr15 18918010 18918437 -82462084 - LTR53 LTR ERVL -40 479 5 577 220 16 44 chr15 18918482 18918664 -82461857 - L1MDa LINE L1 -4821 1719 1543 443 241 73 7 chr15 18918668 18918805 -82461716 + MER21B LTR ERV1 661 806 -57 2617 59 0 0 chr15 18919378 18919681 -82460840 - AluY SINE Alu -8 303 1 25 31 0 0 chr15 18920096 18920128 -82460393 + AT_rich Low_complexity Low_complexity 1 32 0 694 108 0 0 chr15 18920128 18920230 -82460291 - L1MB3 LINE L1 -8 6175 6074 606 237 0 0 chr15 18920240 18920358 -82460163 - FLAM_C SINE Alu -24 119 2 1415 173 43 18 chr15 18920359 18920636 -82459885 - L1M3 LINE L1 -572 5608 5325 2396 101 0 3 chr15 18920639 18920946 -82459575 - AluSq SINE Alu -7 306 1 1441 83 0 0 chr15 18920956 18921137 -82459384 - AluY SINE Alu 0 311 131 742 209 26 13 chr15 18921502 18921655 -82458866 + FRAM SINE Alu 1 155 -21 246 309 31 0 chr15 18921663 18921760 -82458761 + MIR SINE MIR 141 240 -22 2080 194 84 20 chr15 18921803 18922361 -82458160 - L1M3 LINE L1 -2870 3276 2683 1251 121 0 0 chr15 18922361 18922526 -82457995 + AluSq SINE Alu 1 165 -148 397 167 0 0 chr15 18922528 18922588 -82457933 + AluS SINE Alu 233 292 -9 833 242 148 25 chr15 18923382 18923775 -82456746 - L1M3 LINE L1 -3560 2586 2146 314 325 38 24 chr15 18923784 18923996 -82456525 - L1MEc LINE L1 -4332 2064 1850 1935 132 0 35 chr15 18924029 18924339 -82456182 - AluSq SINE Alu -14 299 1 1842 99 15 33 chr15 18924341 18924613 -82455908 - AluSp SINE Alu -13 300 34 2264 93 13 3 chr15 18924868 18925170 -82455351 + AluY SINE Alu 1 305 -6 245 311 126 0 chr15 18925205 18925324 -82455197 + MIR SINE MIR 129 262 0 5260 211 69 83 chr15 18926242 18927943 -82452578 - L1MDa LINE L1 -2118 4422 2699 2232 108 26 7 chr15 18927943 18928250 -82452271 - AluSq SINE Alu 0 313 1 5260 211 69 83 chr15 18928250 18928688 -82451833 - L1MDa LINE L1 -3841 2699 2256 1667 158 83 9 chr15 18928688 18929024 -82451497 + MER46B DNA MER2_type 1 236 0 5260 211 69 83 chr15 18929024 18929962 -82450559 - L1MDa LINE L1 -4284 2256 1406 1948 124 4 0 chr15 18929962 18930237 -82450284 - AluSg SINE Alu -34 276 1 5260 211 69 83 chr15 18930237 18930806 -82449715 - L1MDa LINE L1 -5134 1406 831 2226 104 0 17 chr15 18931967 18932266 -82448255 - AluSx SINE Alu -18 294 1 492 264 34 7 chr15 18932347 18932495 -82448026 + MIR SINE MIR 81 232 -30 1401 153 142 47 chr15 18933054 18933237 -82447284 - AluJo SINE Alu -11 301 82 324 0 0 0 chr15 18933237 18933273 -82447248 + (TG)n Simple_repeat Simple_repeat 1 36 0 1401 153 142 47 chr15 18933273 18933364 -82447157 - AluJo SINE Alu -230 82 1 2048 97 48 7 chr15 18933599 18933888 -82446633 + AluSp SINE Alu 1 301 -12 206 246 15 0 chr15 18934219 18934284 -82446237 + T-rich Low_complexity Low_complexity 4 69 0 1409 178 63 72 chr15 18934306 18934492 -82446029 - MER2 DNA MER2_type 0 345 159 1607 160 82 3 chr15 18934492 18934774 -82445747 - AluJb SINE Alu -8 304 1 792 164 0 15 chr15 18934780 18934914 -82445607 - FLAM_C SINE Alu 0 133 2 1409 178 63 72 chr15 18934914 18935068 -82445453 - MER2 DNA MER2_type -191 154 1 1029 210 174 3 chr15 18935415 18935743 -82444778 - L1MD2 LINE L1 -16 6343 5960 25 31 0 0 chr15 18935775 18935807 -82444714 + AT_rich Low_complexity Low_complexity 1 32 0 1292 175 18 13 chr15 18935807 18936035 -82444486 - AluJo SINE Alu -24 288 60 344 172 81 46 chr15 18936035 18936122 -82444399 - L1MD2 LINE L1 -469 5890 5801 1827 120 11 19 chr15 18936123 18936389 -82444132 - AluSx SINE Alu 0 312 49 1708 114 4 0 chr15 18936673 18936910 -82443611 - AluSg/x SINE Alu 0 310 73 818 93 0 0 chr15 18937078 18937213 -82443308 - AluY SINE Alu 0 309 175 239 300 90 0 chr15 18938027 18938127 -82442394 + MIR SINE MIR 40 148 -60 21 36 0 0 chr15 18939101 18939129 -82441392 + AT_rich Low_complexity Low_complexity 1 28 0 2188 93 0 23 chr15 18941207 18941508 -82439013 - AluY SINE Alu -17 294 1 28 48 0 0 chr15 18942561 18942603 -82437918 + AT_rich Low_complexity Low_complexity 1 42 0 270 81 0 0 chr15 18942607 18942644 -82437877 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 189 0 0 0 chr15 18942665 18942686 -82437835 + (TCTA)n Simple_repeat Simple_repeat 4 24 0 1590 111 0 4 chr15 18942710 18942935 -82437586 + AluSp SINE Alu 85 308 -5 1053 252 45 13 chr15 18945999 18946309 -82434212 - L1ME1 LINE L1 -44 6122 5803 2245 103 3 0 chr15 18946364 18946655 -82433866 - AluSq SINE Alu -21 292 1 708 234 53 6 chr15 18948558 18948729 -82431792 + MER58A DNA MER1_type 45 223 -1 1921 151 43 0 chr15 18948840 18949139 -82431382 - AluSx SINE Alu 0 312 1 225 128 26 0 chr15 18950822 18950861 -82429660 - MER58B DNA MER1_type 0 341 302 1591 252 29 25 chr15 18952148 18952675 -82427846 - L1M4 LINE L1 -1779 4367 3839 922 130 0 0 chr15 18952695 18952826 -82427695 - FLAM_C SINE Alu -7 136 6 2803 237 55 51 chr15 18952830 18952898 -82427623 - L1M4 LINE L1 -2300 3846 3780 2080 116 0 47 chr15 18952898 18953216 -82427305 - AluSx SINE Alu -9 303 1 2803 237 55 51 chr15 18953216 18953495 -82427026 - L1M4 LINE L1 -2366 3780 3504 2298 107 3 3 chr15 18953495 18953803 -82426718 + AluSq SINE Alu 2 309 -4 2803 237 55 51 chr15 18953803 18954412 -82426109 - L1M4 LINE L1 -2642 3504 2881 1974 128 3 10 chr15 18954412 18954701 -82425820 - AluSp SINE Alu -26 287 1 2803 237 55 51 chr15 18954701 18954905 -82425616 - L1M4 LINE L1 -3265 2881 2679 369 92 0 19 chr15 18954905 18955143 -82425378 + AluY SINE Alu 1 295 -6 280 188 94 0 chr15 18955145 18955209 -82425312 - L1M4 LINE L1 -3460 2686 2617 1963 74 0 4 chr15 18955994 18956236 -82424285 + AluY SINE Alu 1 241 -70 1026 248 158 38 chr15 18957252 18957535 -82422986 - L1ME2 LINE L1 -112 6052 5805 1683 174 10 3 chr15 18957535 18957833 -82422688 - AluJb SINE Alu -10 302 3 1026 248 158 38 chr15 18957833 18958054 -82422467 - L1ME2 LINE L1 -359 5805 5487 1984 138 7 0 chr15 18958583 18958887 -82421634 - AluSp SINE Alu -7 306 1 2165 121 0 13 chr15 18958904 18959209 -82421312 - AluSx SINE Alu -11 301 1 280 246 32 56 chr15 18960659 18960785 -82419736 + Charlie5 DNA MER1_type 1 123 -2489 * 1099 218 5 63 chr15 18960768 18961077 -82419444 + Charlie5 DNA MER1_type 2222 2508 -116 2251 106 3 0 chr15 18961077 18961370 -82419151 - AluSx SINE Alu -18 294 1 1099 218 5 63 chr15 18961370 18961427 -82419094 + Charlie5 DNA MER1_type 2508 2567 -57 2044 153 0 0 chr15 18961434 18961728 -82418793 - AluSx SINE Alu -18 294 1 23 33 0 0 chr15 18962408 18962438 -82418083 + AT_rich Low_complexity Low_complexity 1 30 0 2082 101 0 34 chr15 18962934 18963231 -82417290 + AluSc SINE Alu 1 287 -22 2454 81 7 3 chr15 18965161 18965469 -82415052 + AluSq SINE Alu 1 309 -4 21 0 0 0 chr15 18965570 18965591 -82414930 + AT_rich Low_complexity Low_complexity 1 21 0 790 171 0 8 chr15 18965593 18965722 -82414799 + FLAM_A SINE Alu 1 128 -5 609 179 0 0 chr15 18967200 18967323 -82413198 + (TG)n Simple_repeat Simple_repeat 2 124 0 2127 128 0 0 chr15 18967326 18967623 -82412898 - AluSx SINE Alu -15 297 1 189 271 0 0 chr15 18967625 18967684 -82412837 + L3b LINE CR1 1355 1413 -170 1106 272 101 34 chr15 18968500 18968714 -82411807 - L1ME2 LINE L1 -299 5865 5667 1445 155 102 11 chr15 18968714 18968978 -82411543 - AluJb SINE Alu -21 291 4 1106 272 101 34 chr15 18968978 18969795 -82410726 - L1ME2 LINE L1 -497 5667 4830 1064 264 53 24 chr15 18969822 18970239 -82410282 - L1ME2 LINE L1 -1995 4151 3723 242 302 17 17 chr15 18970496 18970612 -82409909 - L1ME2 LINE L1 -2475 3671 3556 * 4608 179 60 8 chr15 18970591 18971040 -82409481 - L1MB3 LINE L1 -31 6152 5728 2261 101 3 7 chr15 18971040 18971348 -82409173 - AluSc SINE Alu -2 307 1 4608 179 60 8 chr15 18971348 18972224 -82408297 - L1MB3 LINE L1 -455 5728 4754 224 30 30 0 chr15 18972431 18972464 -82408057 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2378 68 0 0 chr15 18972466 18972747 -82407774 - AluY SINE Alu -26 285 5 489 281 93 56 chr15 18972753 18973202 -82407319 - L1MC5 LINE L1 -179 7782 7317 390 208 32 97 chr15 18973370 18973524 -82406997 - L1MC5 LINE L1 -861 7100 6957 772 244 45 42 chr15 18973574 18973910 -82406611 - L1MB3 LINE L1 -3097 3049 2713 1873 159 0 0 chr15 18976000 18976290 -82404231 + AluJb SINE Alu 1 290 -22 2211 79 0 0 chr15 18976305 18976584 -82403937 + AluSq SINE Alu 9 287 -26 2232 78 3 29 chr15 18980317 18980625 -82399896 - AluSc SINE Alu -9 300 1 2048 227 72 39 chr15 18981094 18981680 -82398841 - MER77 LTR ERV1 0 605 1 1060 256 53 12 chr15 18981834 18982154 -82398367 + MER58B DNA MER1_type 4 336 -5 22 0 0 0 chr15 18982324 18982346 -82398175 + AT_rich Low_complexity Low_complexity 1 22 0 255 61 0 0 chr15 18984722 18984755 -82395766 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 3588 191 67 67 chr15 18984762 18985581 -82394940 - L1MB5 LINE L1 0 6174 5357 2227 109 0 0 chr15 18985581 18985893 -82394628 - AluSx SINE Alu 0 312 1 3588 191 67 67 chr15 18985893 18986783 -82393738 - L1MB5 LINE L1 -817 5357 4457 1513 221 95 12 chr15 18986788 18987159 -82393362 - L1MB5 LINE L1 -2486 3660 3234 2311 87 0 6 chr15 18987159 18987470 -82393051 - AluSc SINE Alu 0 309 1 1513 221 95 12 chr15 18987470 18987605 -82392916 - L1MB5 LINE L1 -2912 3234 3112 912 196 5 5 chr15 18987610 18987799 -82392722 - AluJb SINE Alu -6 306 118 1390 213 67 13 chr15 18987803 18988253 -82392268 - L1MB5 LINE L1 -3060 3086 2613 1544 148 0 44 chr15 18988386 18988657 -82391864 + AluJb SINE Alu 23 281 -31 225 139 0 0 chr15 18988672 18988715 -82391806 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 369 0 0 0 chr15 18988718 18988759 -82391762 + (TG)n Simple_repeat Simple_repeat 2 42 0 30 59 0 0 chr15 18988759 18988810 -82391711 + AT_rich Low_complexity Low_complexity 1 51 0 1797 272 52 47 chr15 18988810 18989775 -82390746 - HERVL68 LTR ERVL -1920 1117 60 2224 186 107 0 chr15 18989783 18990289 -82390232 - MER68 LTR ERV1 -2 560 1 328 264 107 21 chr15 18990291 18990431 -82390090 - L1ME LINE L1 -339 5782 5631 626 211 55 0 chr15 18993938 18994066 -82386455 + AluJb SINE Alu 174 308 -4 276 75 132 0 chr15 18994066 18994119 -82386402 + L1MC1 LINE L1 6265 6324 -9 1504 166 80 43 chr15 18994496 18994908 -82385613 - MLT1C LTR MaLR 0 467 1 864 236 145 51 chr15 18994908 18995294 -82385227 - MLT1C LTR MaLR -42 425 3 250 307 17 22 chr15 18995628 18995807 -82384714 + (TGAG)n Simple_repeat Simple_repeat 1 178 0 311 323 6 0 chr15 18996122 18996289 -82384232 + (TG)n Simple_repeat Simple_repeat 1 168 0 21 36 0 0 chr15 18996559 18996587 -82383934 + AT_rich Low_complexity Low_complexity 1 28 0 695 167 0 0 chr15 18996773 18996887 -82383634 + FLAM_A SINE Alu 20 133 -9 1997 117 0 19 chr15 18997717 18998025 -82382496 + AluSg SINE Alu 1 302 -8 2113 89 7 13 chr15 18999660 18999964 -82380557 - AluSx SINE Alu -10 302 1 301 264 179 9 chr15 18999987 19000093 -82380428 - L1ME4a LINE L1 -3 6118 5995 353 242 10 0 chr15 19002127 19002226 -82378295 + MER5A DNA MER1_type 10 98 -80 2209 94 0 10 chr15 19002458 19002766 -82377755 + AluY SINE Alu 1 305 -6 1086 96 5 75 chr15 19002766 19002954 -82377567 + AluSg/x SINE Alu 133 307 -3 912 190 194 7 chr15 19003100 19003252 -82377269 + MER2 DNA MER2_type 2 124 -220 2427 75 0 0 chr15 19003252 19003560 -82376961 + AluY SINE Alu 1 308 -3 912 190 194 7 chr15 19003560 19003696 -82376825 + MER2 DNA MER2_type 124 344 0 935 178 40 0 chr15 19004960 19005134 -82375387 + MER58A DNA MER1_type 44 224 0 2069 111 3 3 chr15 19005459 19005757 -82374764 + AluSx SINE Alu 1 298 -14 1131 133 0 0 chr15 19005867 19006033 -82374488 - AluSc SINE Alu -12 297 132 2333 87 0 0 chr15 19006033 19006342 -82374179 - AluY SINE Alu -2 309 1 481 296 65 88 chr15 19007683 19008034 -82372487 - L1MEc LINE L1 -4673 1421 1065 345 273 55 55 chr15 19008037 19008286 -82372235 - L1MEc LINE L1 -5026 1044 793 2221 78 10 0 chr15 19008286 19008581 -82371940 - AluSg SINE Alu -12 298 1 345 273 55 55 chr15 19008581 19008661 -82371860 - L1MEc LINE L1 -5276 794 715 343 239 62 44 chr15 19009346 19009459 -82371062 - L1MEc LINE L1 -5954 116 2 249 311 259 11 chr15 19011502 19011788 -82368733 - L2 LINE L2 -5 3308 2952 408 253 45 62 chr15 19012053 19012342 -82368179 - L1MC5 LINE L1 -184 7777 7494 1161 178 201 22 chr15 19012347 19012505 -82368016 - MLT1B LTR MaLR 0 374 246 2057 108 7 0 chr15 19012505 19012802 -82367719 - AluSx SINE Alu -9 303 5 1161 178 201 22 chr15 19012802 19012959 -82367562 - MLT1B LTR MaLR -128 246 15 339 291 109 11 chr15 19012975 19013150 -82367371 - L1MC5 LINE L1 -465 7496 7305 514 308 169 17 chr15 19013284 19013752 -82366769 - L1MC5 LINE L1 -735 7226 6688 1854 162 3 0 chr15 19013759 19014055 -82366466 - AluJb SINE Alu -15 297 1 1412 207 223 24 chr15 19014673 19015184 -82365337 - MER90 LTR ERV1 0 614 2 1838 100 12 0 chr15 19015190 19015449 -82365072 - AluSq SINE Alu -51 262 1 589 217 95 59 chr15 19016042 19016263 -82364258 - L1MC5 LINE L1 -53 7908 7680 1733 191 48 18 chr15 19017055 19017447 -82363074 - L1MB4 LINE L1 0 6180 5777 1182 121 0 0 chr15 19017447 19017620 -82362901 - AluSg/x SINE Alu -17 293 121 21 0 0 0 chr15 19017621 19017642 -82362879 + AT_rich Low_complexity Low_complexity 1 21 0 388 285 66 79 chr15 19017669 19017851 -82362670 - L1MDa LINE L1 -4157 2383 2203 2125 115 0 0 chr15 19017851 19018147 -82362374 - AluSx SINE Alu -16 296 1 388 285 66 79 chr15 19018147 19018192 -82362329 - L1MDa LINE L1 -4337 2203 2159 1856 36 0 9 chr15 19018321 19018574 -82361947 - AluY SINE Alu 0 309 59 395 22 0 0 chr15 19118807 19118852 -82261669 + (TC)n Simple_repeat Simple_repeat 2 46 0 1170 121 0 12 chr15 19120896 19121069 -82259452 + AluSg/x SINE Alu 86 256 -56 5123 221 51 21 chr15 19121069 19121163 -82259358 + L1M2c LINE L1 11 101 -6688 1983 104 24 3 chr15 19121163 19121450 -82259071 + AluY SINE Alu 1 293 -18 5123 221 51 21 chr15 19121450 19122519 -82258002 + L1M2c LINE L1 101 1209 -5580 21 0 0 0 chr15 19122665 19122686 -82257835 + GC_rich Low_complexity Low_complexity 1 21 0 782 234 88 68 chr15 19123623 19123700 -82256821 + L1MEc LINE L1 1978 2052 -4344 2188 92 0 3 chr15 19123700 19123995 -82256526 + AluSx SINE Alu 1 294 -18 782 234 88 68 chr15 19123995 19124296 -82256225 + L1MEc LINE L1 2052 2373 -4023 2070 122 3 3 chr15 19124296 19124600 -82255921 + AluSp SINE Alu 1 304 -9 782 234 88 68 chr15 19124600 19124753 -82255768 + L1MEc LINE L1 2373 2521 -3875 1602 109 26 4 chr15 19124778 19125007 -82255514 + AluSx SINE Alu 1 234 -78 984 117 0 0 chr15 19125007 19125144 -82255377 + AluSp/q SINE Alu 170 306 -7 301 285 62 17 chr15 19125129 19125308 -82255213 + L1MEc LINE L1 2495 2681 -3534 * 309 261 11 0 chr15 19125440 19125528 -82254993 + L1MEc LINE L1 2758 2846 -3369 695 188 0 45 chr15 19125531 19125685 -82254836 - MER44D DNA MER2_type 0 609 463 731 190 0 0 chr15 19125685 19125806 -82254715 + AluSg/x SINE Alu 156 276 -36 180 0 0 0 chr15 19125827 19125847 -82254674 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 543 127 100 0 chr15 19125847 19125957 -82254564 - MER44D DNA MER2_type -138 467 347 348 185 0 0 chr15 19125976 19126030 -82254491 + MER44D DNA MER2_type 38 361 -248 449 68 17 0 chr15 19126053 19126367 -82254154 + AluYb8 SINE Alu 2 316 0 346 231 0 39 chr15 19126368 19126472 -82254049 + L1M3 LINE L1 97 196 -6663 * 1202 229 64 44 chr15 19126442 19126549 -82253972 + L1M3 LINE L1 5605 5708 -1249 2238 120 3 0 chr15 19126549 19126849 -82253672 + AluSx SINE Alu 1 301 -11 1202 229 64 44 chr15 19126849 19127286 -82253235 + L1M3 LINE L1 5708 6160 -797 844 196 33 76 chr15 19127280 19127420 -82253101 + L1ME3 LINE L1 5564 5688 -476 * 2495 87 3 0 chr15 19127420 19127729 -82252792 - AluSp SINE Alu -3 310 1 844 196 33 76 chr15 19127729 19127864 -82252657 + L1ME3 LINE L1 5688 5827 -337 1112 74 0 27 chr15 19127930 19128063 -82252458 + AluSg/x SINE Alu 167 297 -15 2511 87 0 3 chr15 19128063 19128373 -82252148 + AluY SINE Alu 1 309 -2 1112 74 0 27 chr15 19128373 19128388 -82252133 + AluSg/x SINE Alu 297 311 -1 540 157 41 6 chr15 19128389 19128501 -82252020 + L1M3 LINE L1 6297 6396 -598 422 230 43 123 chr15 19128496 19128666 -82251855 + L1ME3 LINE L1 5813 5931 -231 * 2388 105 0 3 chr15 19128666 19128971 -82251550 + AluSx SINE Alu 1 304 -8 422 230 43 123 chr15 19128971 19129113 -82251408 + L1ME3 LINE L1 5931 6083 -79 505 218 8 45 chr15 19129113 19129246 -82251275 - MLT2C1 LTR ERVL 0 397 270 2396 90 0 10 chr15 19129262 19129572 -82250949 + AluSp SINE Alu 1 307 -6 1574 174 15 47 chr15 19129703 19129826 -82250695 + MLT1A1 LTR MaLR 38 163 -202 2703 58 0 0 chr15 19129826 19130135 -82250386 + AluY SINE Alu 1 309 -2 1574 174 15 47 chr15 19130135 19130350 -82250171 + MLT1A1 LTR MaLR 163 365 0 438 301 139 26 chr15 19130352 19130661 -82249860 + MLT1C LTR MaLR 72 415 -52 2507 50 0 10 chr15 19130663 19130961 -82249560 + AluY SINE Alu 1 295 -16 1389 191 14 11 chr15 19137792 19138075 -82242446 + MSTB1 LTR MaLR 149 432 0 2099 143 3 0 chr15 19138235 19138535 -82241986 - AluSx SINE Alu -11 301 1 1956 163 16 7 chr15 19138912 19139219 -82241302 - AluJb SINE Alu -2 310 1 1446 196 43 47 chr15 19139499 19139800 -82240721 + AluSx SINE Alu 1 300 -12 2246 104 24 0 chr15 19140169 19140456 -82240065 + AluSx SINE Alu 1 294 -18 2664 49 0 3 chr15 19141571 19141878 -82238643 - AluY SINE Alu -5 306 1 869 228 22 22 chr15 19142100 19142332 -82238189 + L1M1 LINE L1 13 244 -7321 2239 90 17 7 chr15 19142433 19142722 -82237799 + AluSx SINE Alu 2 293 -19 1207 155 0 0 chr15 19142722 19142896 -82237625 + AluJb SINE Alu 134 307 -5 2238 114 0 7 chr15 19143017 19143314 -82237207 - AluSx SINE Alu -16 296 2 2319 123 0 3 chr15 19143432 19143740 -82236781 + AluSg SINE Alu 1 307 -3 403 243 195 5 chr15 19143766 19143868 -82236653 + L1ME2 LINE L1 5010 5091 -1055 2431 94 0 0 chr15 19143868 19144167 -82236354 + AluSx SINE Alu 1 299 -13 403 243 195 5 chr15 19144167 19144249 -82236272 + L1ME2 LINE L1 5091 5229 -917 1469 178 16 52 chr15 19144365 19144560 -82235961 - AluJb SINE Alu -14 298 116 1942 170 0 6 chr15 19144560 19144872 -82235649 + AluSx SINE Alu 1 310 -2 1469 178 16 52 chr15 19144872 19144985 -82235536 - AluJb SINE Alu -196 116 1 1861 248 112 6 chr15 19145030 19145658 -82234863 + L1ME2 LINE L1 5417 6110 -54 385 198 12 0 chr15 19145656 19145737 -82234784 + L1ME1 LINE L1 5487 5568 -598 * 445 117 0 0 chr15 19145747 19145824 -82234697 - AluS SINE Alu -4 306 230 1975 149 0 0 chr15 19146061 19146386 -82234135 - AluSx SINE Alu 0 325 1 722 126 24 31 chr15 19146387 19146514 -82234007 - AluJo/FLAM SINE Alu -185 127 2 1105 180 60 85 chr15 19146516 19146832 -82233689 + L1ME1 LINE L1 5552 5859 -307 2195 123 3 7 chr15 19146958 19147260 -82233261 + AluSq SINE Alu 1 301 -12 1333 172 121 8 chr15 19147373 19147505 -82233016 + AluSg SINE Alu 7 123 -187 2585 73 0 13 chr15 19147505 19147819 -82232702 + AluSx SINE Alu 3 312 0 1333 172 121 8 chr15 19147819 19147942 -82232579 + AluSg SINE Alu 123 291 -19 2352 90 0 0 chr15 19147950 19148239 -82232282 + AluSg SINE Alu 1 289 -21 810 293 56 23 chr15 19148328 19148788 -82231733 - MLT1C-int LTR MaLR -757 614 5 201 147 0 0 chr15 19148844 19148878 -82231643 + (TA)n Simple_repeat Simple_repeat 2 35 0 387 279 25 41 chr15 19148901 19149148 -82231373 - MLT2F LTR ERVL -49 614 292 3113 154 42 2 chr15 19149156 19149702 -82230819 + LTR24B LTR ERV1 2 569 -7 238 291 97 8 chr15 19149780 19149914 -82230607 - MLT2F LTR ERVL -517 146 1 2319 79 14 3 chr15 19149952 19150244 -82230277 + AluSx SINE Alu 1 295 -17 791 269 109 22 chr15 19150273 19150633 -82229888 - MLT1C LTR MaLR -7 460 69 708 145 53 0 chr15 19150633 19150764 -82229757 - MLT1A1 LTR MaLR 0 365 228 283 138 15 15 chr15 19151062 19151127 -82229394 + GA-rich Low_complexity Low_complexity 3 67 0 712 169 15 0 chr15 19151672 19151802 -82228719 + FLAM_C SINE Alu 1 132 -1 309 122 0 0 chr15 19151830 19151879 -82228642 + Ricksha DNA DNA 295 343 -1703 580 256 47 21 chr15 19151881 19152115 -82228406 + MLT2C2 LTR ERVL 1 240 -224 558 191 56 93 chr15 19152090 19152305 -82228216 + MLT1D LTR MaLR 7 213 -292 * 265 152 315 0 chr15 19155135 19155227 -82225294 + FLAM_C SINE Alu 1 121 -12 22 0 0 0 chr15 19155227 19155249 -82225272 + AT_rich Low_complexity Low_complexity 1 22 0 1982 57 0 0 chr15 19156210 19156439 -82224082 + AluY SINE Alu 1 229 -82 1392 194 123 5 chr15 19156443 19156824 -82223697 + Charlie4a DNA MER1_type 83 508 0 1828 208 2 45 chr15 19157734 19158133 -82222388 - MER77 LTR ERV1 -4 601 220 237 315 31 47 chr15 19158294 19158421 -82222100 + L2 LINE L2 3146 3270 -43 2023 145 9 9 chr15 19158563 19158900 -82221621 + MER1B DNA MER1_type 1 337 0 2246 117 0 7 chr15 19158924 19159223 -82221298 - AluSx SINE Alu -10 302 6 1141 200 90 10 chr15 19159227 19159429 -82221092 - L1MCa LINE L1 -2798 3628 3444 1644 110 141 0 chr15 19159429 19159692 -82220829 - AluSx SINE Alu -2 300 1 1141 200 90 10 chr15 19159692 19159965 -82220556 - L1MCa LINE L1 -2982 3444 855 590 286 102 79 chr15 19159985 19160328 -82220193 - MER77 LTR ERV1 -254 351 1 697 280 170 13 chr15 19160329 19160697 -82219824 + L1MC/D LINE L1 5254 5710 -2098 2156 125 0 3 chr15 19160697 19160992 -82219529 + AluSg SINE Alu 1 294 -16 697 280 170 13 chr15 19160992 19161083 -82219438 + L1MC/D LINE L1 5710 5785 -2023 1001 190 49 19 chr15 19161709 19162008 -82218513 - MER2 DNA MER2_type -2 343 1 24 53 0 0 chr15 19162104 19162142 -82218379 + AT_rich Low_complexity Low_complexity 1 38 0 677 125 39 55 chr15 19162513 19162641 -82217880 + FLAM_C SINE Alu 2 127 -16 1975 134 7 17 chr15 19162658 19162957 -82217564 + AluSx SINE Alu 3 298 -14 22 0 0 0 chr15 19163654 19163676 -82216845 + AT_rich Low_complexity Low_complexity 1 22 0 455 132 0 0 chr15 19163693 19163769 -82216752 + AluJ/FRAM SINE Alu 229 304 -8 585 139 0 0 chr15 19163769 19163855 -82216666 - MER2 DNA MER2_type -213 132 47 1585 273 50 7 chr15 19163955 19164417 -82216104 + L1M1 LINE L1 269 750 -6815 1319 141 69 40 chr15 19164417 19164693 -82215828 + LTR19A LTR ERV1 1 284 -202 8631 189 46 50 chr15 19164695 19164826 -82215695 + L1M1 LINE L1 2184 2314 -5251 402 174 0 14 chr15 19164826 19164922 -82215599 - AluS SINE Alu 0 302 230 8631 189 46 50 chr15 19164922 19165729 -82214792 + L1M1 LINE L1 2314 3122 -4443 1734 161 8 0 chr15 19165729 19165990 -82214531 + AluSx SINE Alu 35 297 -15 2481 81 0 0 chr15 19165996 19166293 -82214228 + AluY SINE Alu 1 297 -14 8631 189 46 50 chr15 19166293 19166790 -82213731 + L1M1 LINE L1 3127 3624 -3941 2129 127 10 10 chr15 19166790 19167098 -82213423 + AluSq SINE Alu 1 308 -5 8631 189 46 50 chr15 19167098 19167903 -82212618 + L1M1 LINE L1 3624 4430 -3135 1838 155 0 57 chr15 19167903 19168219 -82212302 + AluJb SINE Alu 1 298 -14 8631 189 46 50 chr15 19168219 19169450 -82211071 + L1M1 LINE L1 4430 5721 -1844 1069 134 6 0 chr15 19169450 19169607 -82210914 + AluSx SINE Alu 1 158 -154 2044 131 3 0 chr15 19177001 19177306 -82203215 + AluSq SINE Alu 1 306 -7 273 185 0 62 chr15 19177306 19177381 -82203140 - L1M4 LINE L1 -1532 4614 4545 432 273 118 68 chr15 19177412 19178093 -82202428 - L1M4 LINE L1 -1665 4481 3767 1219 153 0 40 chr15 19178121 19178349 -82202172 - AluJo SINE Alu -9 303 85 260 285 105 40 chr15 19178440 19178668 -82201853 - L1M4 LINE L1 -2467 3679 3437 1336 195 36 20 chr15 19178749 19179051 -82201470 - AluJb SINE Alu -4 308 2 462 159 0 65 chr15 19179432 19179539 -82200982 - AluJb SINE Alu -3 309 210 1948 134 0 28 chr15 19179550 19179871 -82200650 - AluSx SINE Alu 0 312 1 25 75 0 0 chr15 19179896 19179949 -82200572 + AT_rich Low_complexity Low_complexity 1 53 0 2262 75 3 0 chr15 19180673 19180966 -82199555 - AluY SINE Alu -12 299 6 1850 139 7 14 chr15 19181324 19181619 -82198902 + AluJb SINE Alu 5 297 -15 24 32 0 0 chr15 19182171 19182202 -82198319 + AT_rich Low_complexity Low_complexity 1 31 0 31 0 0 0 chr15 19182698 19182729 -82197792 + AT_rich Low_complexity Low_complexity 1 31 0 540 234 98 33 chr15 19182983 19183167 -82197354 - L1MC4a LINE L1 -1969 5839 5644 1481 119 155 0 chr15 19183169 19183420 -82197101 - AluY SINE Alu -7 304 15 289 338 89 19 chr15 19183443 19183656 -82196865 - L1MC4a LINE L1 -2156 5652 5425 696 239 41 82 chr15 19183687 19184005 -82196516 - L1MD2 LINE L1 -55 6304 6000 400 253 75 29 chr15 19184043 19184217 -82196304 - L1MC4a LINE L1 -2373 5435 5254 889 177 51 95 chr15 19184830 19185040 -82195481 + L1MB2 LINE L1 5900 6091 -80 874 146 0 0 chr15 19185040 19185163 -82195358 + FLAM_C SINE Alu 1 123 -10 889 177 51 95 chr15 19185163 19185241 -82195280 + L1MB2 LINE L1 6091 6171 0 1446 177 0 71 chr15 19185251 19185404 -82195117 + AluJb SINE Alu 1 122 -190 1574 81 28 0 chr15 19185404 19185615 -82194906 + AluSg/x SINE Alu 70 286 -24 1446 177 0 71 chr15 19185615 19185771 -82194750 + AluJb SINE Alu 122 288 -24 2135 100 16 13 chr15 19185907 19186085 -82194436 - AluSg SINE Alu 0 310 129 2176 100 0 13 chr15 19186085 19186395 -82194126 - AluSg SINE Alu -4 306 1 2135 100 16 13 chr15 19186395 19186525 -82193996 - AluSg SINE Alu -181 129 1 235 196 39 0 chr15 19186631 19186682 -82193839 - MER94 DNA DNA -81 53 1 2140 98 10 7 chr15 19186700 19187005 -82193516 - AluSc SINE Alu -2 307 2 5753 112 61 6 chr15 19189061 19189526 -82190995 - L1MA5A LINE L1 -2 6295 5857 213 39 0 0 chr15 19189526 19189552 -82190969 + (TA)n Simple_repeat Simple_repeat 2 27 0 5753 112 61 6 chr15 19189552 19190008 -82190513 - L1MA5A LINE L1 -440 5857 5320 2148 112 0 3 chr15 19190008 19190311 -82190210 - AluSq SINE Alu -11 302 1 2621 155 57 38 chr15 19190311 19190835 -82189686 - L1M2c LINE L1 -4886 1903 1370 481 118 0 129 chr15 19190836 19190872 -82189649 + AluS SINE Alu 2 41 -272 1919 145 7 0 chr15 19190872 19191162 -82189359 - AluSx SINE Alu -20 292 1 481 118 0 129 chr15 19191162 19191218 -82189303 + AluS SINE Alu 41 82 -231 1634 144 27 27 chr15 19191323 19191622 -82188899 - AluJb SINE Alu -11 301 3 2137 82 3 20 chr15 19191647 19191941 -82188580 + AluSq SINE Alu 1 289 -24 365 262 107 77 chr15 19191947 19192115 -82188406 - L1MCa LINE L1 -4352 2074 1902 1902 136 3 10 chr15 19192446 19192755 -82187766 - AluSx SINE Alu 0 312 6 2336 65 0 0 chr15 19193889 19194183 -82186338 + AluY SINE Alu 1 294 -17 322 214 111 79 chr15 19194238 19194364 -82186157 + L1ME4a LINE L1 5960 6089 -32 232 232 136 40 chr15 19194801 19194899 -82185622 - MIR SINE MIR -28 234 120 2099 93 31 0 chr15 19194899 19195188 -82185333 + AluSq SINE Alu 1 298 -15 232 232 136 40 chr15 19195188 19195214 -82185307 - MIR SINE MIR -142 120 98 899 158 0 0 chr15 19195254 19195387 -82185134 + FLAM_C SINE Alu 1 133 0 220 365 51 15 chr15 19195896 19196033 -82184488 + L2 LINE L2 3172 3313 0 1946 66 73 4 chr15 19196056 19196328 -82184193 - AluY SINE Alu -19 292 2 214 193 193 18 chr15 19196511 19196568 -82183953 + MIR SINE MIR 163 229 -33 470 314 88 18 chr15 19198274 19198548 -82181973 - MARNA DNA Mariner -168 418 126 1693 166 3 25 chr15 19199504 19199823 -82180698 + AluJo SINE Alu 1 312 0 704 136 0 0 chr15 19200468 19200571 -82179950 + FLAM_A SINE Alu 28 130 -12 470 314 136 34 chr15 19201394 19201805 -82178716 + L1MC5 LINE L1 7479 7931 -30 2130 88 7 17 chr15 19201813 19202110 -82178411 + AluSp SINE Alu 1 294 -19 2052 115 0 0 chr15 19202113 19202409 -82178112 + AluSx SINE Alu 1 296 -16 1766 140 25 3 chr15 19203249 19203534 -82176987 + AluSx SINE Alu 1 291 -21 1679 176 0 0 chr15 19203755 19204045 -82176476 + AluJb SINE Alu 1 290 -22 700 209 7 14 chr15 19204397 19204536 -82175985 + AluJo SINE Alu 2 139 -173 2240 89 0 13 chr15 19204539 19204852 -82175669 + AluSx SINE Alu 1 309 -3 290 239 23 23 chr15 19204878 19204966 -82175555 + L1M4 LINE L1 5010 5097 -1049 36 82 0 0 chr15 19205191 19205276 -82175245 + GC_rich Low_complexity Low_complexity 1 85 0 256 197 16 0 chr15 19206591 19206652 -82173869 - L1ME LINE L1 -264 5902 5841 334 238 30 109 chr15 19206978 19207028 -82173493 - L1MC4a LINE L1 -1965 5843 5791 2068 128 0 3 chr15 19207028 19207341 -82173180 - AluSx SINE Alu 0 312 1 334 238 30 109 chr15 19207341 19207492 -82173029 - L1MC4a LINE L1 -2017 5791 5658 2217 85 0 0 chr15 19207532 19207858 -82172663 - AluSq SINE Alu 0 330 5 871 208 38 0 chr15 19208000 19208183 -82172338 + L1M4 LINE L1 4130 4319 -1827 2349 73 3 0 chr15 19208193 19208493 -82172028 - AluSp SINE Alu -12 301 1 1486 169 59 53 chr15 19208586 19208923 -82171598 - MER44D DNA MER2_type 0 609 1 696 244 85 36 chr15 19208923 19208955 -82171566 + L1M4 LINE L1 4338 4367 -1779 2382 67 0 0 chr15 19208955 19209253 -82171268 + AluSg SINE Alu 1 298 -12 696 244 85 36 chr15 19209253 19209502 -82171019 + L1M4 LINE L1 4367 4633 -1513 225 156 16 47 chr15 19209515 19209579 -82170942 - L1ME1 LINE L1 0 6166 6105 337 213 0 0 chr15 19209590 19209644 -82170877 - Tigger2 DNA MER2_type -16 2702 2646 1934 105 7 20 chr15 19209644 19209938 -82170583 - AluSq SINE Alu -23 290 1 1339 62 150 0 chr15 19209945 19210138 -82170383 - AluSg/x SINE Alu -6 306 85 2112 151 16 13 chr15 19210177 19210549 -82169972 - Tigger2 DNA MER2_type -73 2645 2273 402 191 0 0 chr15 19210538 19210606 -82169915 - Tigger2 DNA MER2_type -2649 69 2 * 1891 127 10 10 chr15 19210663 19210963 -82169558 - AluSx SINE Alu -12 300 1 713 157 37 30 chr15 19210977 19211111 -82169410 - AluJo SINE Alu -176 136 2 2929 140 55 2 chr15 19211116 19211739 -82168782 - L1M2 LINE L1 -529 5762 5102 1012 166 5 7 chr15 19211752 19211960 -82168561 + L1MA6 LINE L1 5879 6076 -236 380 129 7 201 chr15 19211933 19212072 -82168449 + L1MB8 LINE L1 5927 6038 -140 * 1593 150 32 54 chr15 19212075 19212257 -82168264 - AluJb SINE Alu -6 306 132 2154 103 0 0 chr15 19212257 19212549 -82167972 - AluSx SINE Alu -12 300 9 1593 150 32 54 chr15 19212549 19212679 -82167842 - AluJb SINE Alu -180 132 1 2492 166 7 18 chr15 19212679 19212950 -82167571 - L1M2 LINE L1 -1131 5015 4750 2326 78 0 3 chr15 19212950 19213257 -82167264 - AluSx SINE Alu -6 306 1 2492 166 7 18 chr15 19213257 19213443 -82167078 - L1M2 LINE L1 -1396 4750 4563 277 54 0 0 chr15 19213483 19213520 -82167001 - L1M2 LINE L1 -1552 4594 4558 1456 167 6 63 chr15 19213523 19213705 -82166816 - AluJo SINE Alu -13 299 141 2057 114 9 19 chr15 19213705 19214020 -82166501 - AluSp SINE Alu -1 312 1 1456 167 6 63 chr15 19214020 19214154 -82166367 - AluJo SINE Alu -171 141 1 3061 195 27 104 chr15 19214154 19214326 -82166195 - L1M4 LINE L1 -1009 5137 4953 2195 83 0 0 chr15 19214326 19214616 -82165905 - AluY SINE Alu -21 290 1 3061 195 27 104 chr15 19214616 19215445 -82165076 - L1M4 LINE L1 -1193 4953 4213 830 226 62 34 chr15 19215479 19215805 -82164716 - L1MEc LINE L1 -3730 2416 2110 2315 154 42 27 chr15 19216802 19217210 -82163311 - MLT2D LTR ERVL 0 414 1 1996 104 0 0 chr15 19217246 19217526 -82162995 - AluSx SINE Alu -1 311 32 856 120 32 0 chr15 19217528 19217653 -82162868 - AluJo/FLAM SINE Alu -173 129 1 2055 148 44 31 chr15 19218800 19219021 -82161500 - MLT1B LTR MaLR 0 390 160 2123 65 3 77 chr15 19219021 19219344 -82161177 - AluSp SINE Alu -14 299 1 2055 148 44 31 chr15 19219344 19219507 -82161014 - MLT1B LTR MaLR -230 160 1 1226 214 65 0 chr15 19219745 19219985 -82160536 - Tigger3(Golem) DNA MER2_type 0 3028 2770 1817 117 0 0 chr15 19219985 19220232 -82160289 - AluSx SINE Alu -63 249 3 315 0 0 0 chr15 19220339 19220374 -82160147 + (CA)n Simple_repeat Simple_repeat 2 36 0 1249 106 17 0 chr15 19220374 19220554 -82159967 + L1MA7 LINE L1 5794 5976 -315 317 260 57 32 chr15 19220571 19220694 -82159827 + MIR3 SINE MIR 33 158 -50 564 127 15 8 chr15 19221002 19221136 -82159385 + (TG)n Simple_repeat Simple_repeat 1 135 0 572 176 8 8 chr15 19221240 19221365 -82159156 + L1MA8 LINE L1 6155 6279 -12 531 0 0 0 chr15 19221852 19221911 -82158610 + (TTATG)n Simple_repeat Simple_repeat 2 60 0 1834 107 59 0 chr15 19221911 19222182 -82158339 - AluSp SINE Alu -26 287 1 353 237 13 0 chr15 19222282 19222358 -82158163 - L1MC4 LINE L1 -184 7858 7782 2223 98 0 16 chr15 19222702 19223019 -82157502 + AluSp SINE Alu 1 312 -1 339 289 81 57 chr15 19223644 19223725 -82156796 + L1MC/D LINE L1 5290 5368 -2440 1727 166 7 7 chr15 19223725 19224026 -82156495 + AluJb SINE Alu 1 301 -11 339 289 81 57 chr15 19224026 19224084 -82156437 + L1MC/D LINE L1 5368 5423 -2385 1989 102 7 3 chr15 19224084 19224409 -82156112 + AluSx SINE Alu 1 326 0 339 289 81 57 chr15 19224409 19224478 -82156043 + L1MC/D LINE L1 5423 5505 -2303 2140 104 36 0 chr15 19227035 19227313 -82153208 + AluSq SINE Alu 16 303 -10 2532 61 0 0 chr15 19227757 19228051 -82152470 - AluY SINE Alu -17 294 1 1178 52 0 0 chr15 19228051 19228185 -82152336 - AluY SINE Alu -177 134 1 225 108 0 0 chr15 19228888 19228925 -82151596 + (CA)n Simple_repeat Simple_repeat 2 38 0 2096 122 38 0 chr15 19229183 19229470 -82151051 - AluSx SINE Alu -14 298 1 716 163 205 6 chr15 19231057 19231223 -82149298 - MLT1B LTR MaLR 0 390 192 2564 55 7 7 chr15 19231323 19231632 -82148889 - AluY SINE Alu -2 309 1 1730 151 46 57 chr15 19232674 19232730 -82147791 - L1MB3 LINE L1 -2 6181 6126 2181 104 0 20 chr15 19232730 19233028 -82147493 - AluSg SINE Alu -14 296 5 1730 151 46 57 chr15 19233028 19233395 -82147126 - L1MB3 LINE L1 -57 6126 5764 968 228 199 3 chr15 19234286 19234593 -82145928 - Tigger7 DNA MER2_type 0 2487 2121 1267 239 3 7 chr15 19234594 19234883 -82145638 - Tigger7 DNA MER2_type -2196 291 4 747 255 74 30 chr15 19234887 19235413 -82145108 - L1MDb LINE L1 -3630 2776 2222 650 153 0 27 chr15 19235426 19235537 -82144984 - FLAM_A SINE Alu -13 129 22 246 251 36 84 chr15 19235545 19235712 -82144809 - L1MDb LINE L1 -4170 2236 2078 1263 239 131 40 chr15 19236222 19237069 -82143452 - L1MDb LINE L1 -4779 1627 748 316 303 87 84 chr15 19238697 19238756 -82141765 - L1ME4a LINE L1 -168 5953 5896 2257 117 0 0 chr15 19238756 19239047 -82141474 - AluSx SINE Alu -21 291 1 316 303 87 84 chr15 19239047 19239078 -82141443 - L1ME4a LINE L1 -225 5896 5867 1958 145 13 7 chr15 19239078 19239381 -82141140 - AluJb SINE Alu -5 307 3 316 303 87 84 chr15 19239381 19239523 -82140998 - L1ME4a LINE L1 -254 5867 5716 2344 79 3 30 chr15 19239523 19239828 -82140693 + AluSx SINE Alu 1 297 -15 316 303 87 84 chr15 19239828 19239916 -82140605 - L1ME4a LINE L1 -405 5716 5630 2472 102 0 0 chr15 19241145 19241450 -82139071 - AluSx SINE Alu -7 305 1 1952 147 3 33 chr15 19244045 19244352 -82136169 + AluJo SINE Alu 1 298 -14 2040 124 17 7 chr15 19244357 19244648 -82135873 - AluSx SINE Alu -18 294 1 873 266 82 43 chr15 19244682 19245171 -82135350 - MLT1J LTR MaLR 0 511 4 216 0 0 0 chr15 19245825 19245849 -82134672 + (T)n Simple_repeat Simple_repeat 1 24 0 1831 159 6 41 chr15 19246463 19246778 -82133743 - AluJo SINE Alu 0 312 9 1707 177 10 13 chr15 19246780 19247085 -82133436 - AluJo SINE Alu -8 304 1 267 326 88 42 chr15 19247367 19247503 -82133018 + MER3 DNA MER1_type 2 151 -58 2329 93 3 19 chr15 19247503 19247813 -82132708 + AluSx SINE Alu 1 305 -7 267 326 88 42 chr15 19247813 19247869 -82132652 + MER3 DNA MER1_type 151 203 -6 * 294 62 0 42 chr15 19247867 19247915 -82132606 + MADE1 DNA Mariner 34 79 -1 533 330 28 1 chr15 19248440 19248730 -82131791 - L1ME3A LINE L1 -167 5995 5700 306 286 91 74 chr15 19248741 19249150 -82131371 - L1ME3A LINE L1 -513 5657 5257 1296 184 131 4 chr15 19249150 19249417 -82131104 - AluJo SINE Alu -1 301 1 306 286 91 74 chr15 19249417 19249467 -82131054 - L1ME3A LINE L1 -913 5257 5209 1401 183 39 10 chr15 19249467 19249779 -82130742 - L1MA9 LINE L1 0 6312 5992 306 286 91 74 chr15 19249779 19250609 -82129912 - L1ME3A LINE L1 -961 5209 4323 2306 90 6 22 chr15 19250609 19250921 -82129600 + AluSc SINE Alu 1 307 -2 2653 68 3 0 chr15 19250922 19251232 -82129289 + AluY SINE Alu 1 311 0 725 184 77 41 chr15 19251726 19251793 -82128728 - MER3 DNA MER1_type -6 203 140 2725 40 0 0 chr15 19251793 19252097 -82128424 + AluY SINE Alu 1 304 -7 725 184 77 41 chr15 19252097 19252225 -82128296 - MER3 DNA MER1_type -69 140 1 2018 135 0 14 chr15 19252277 19252573 -82127948 + AluJo SINE Alu 5 296 -16 309 317 10 0 chr15 19252695 19252799 -82127722 + MER63 DNA MER1_type 142 246 -815 610 246 108 10 chr15 19252837 19253032 -82127489 - MER58C DNA MER1_type 0 215 2 1712 185 45 0 chr15 19253293 19253623 -82126898 - MER7A DNA MER2_type -3 343 1 216 0 0 0 chr15 19253696 19253720 -82126801 + (T)n Simple_repeat Simple_repeat 1 24 0 2223 151 17 14 chr15 19254426 19254842 -82125679 - Tigger3(Golem) DNA MER2_type -336 2693 2277 495 280 16 0 chr15 19254814 19254939 -82125582 - Tigger3(Golem) DNA MER2_type -2902 127 1 * 1944 62 48 140 chr15 19254994 19255330 -82125191 - AluY SINE Alu -6 305 1 2595 50 0 3 chr15 19255453 19255753 -82124768 - AluY SINE Alu -12 299 1 2363 106 0 3 chr15 19255753 19256055 -82124466 - AluSc SINE Alu -8 301 1 2177 112 3 16 chr15 19256166 19256469 -82124052 - AluSq SINE Alu -14 299 1 313 213 53 75 chr15 19256604 19256698 -82123823 - L1MC4a LINE L1 -1632 6176 6085 1944 69 15 15 chr15 19256957 19257262 -82123259 - AluY SINE Alu 0 311 42 1555 167 17 43 chr15 19257743 19257899 -82122622 - AluJo SINE Alu -20 292 146 2459 81 0 10 chr15 19257899 19258209 -82122312 - AluSq SINE Alu -6 307 1 1555 167 17 43 chr15 19258209 19258352 -82122169 - AluJo SINE Alu -166 146 1 903 224 42 8 chr15 19258393 19258656 -82121865 - L1MA4 LINE L1 -2 6298 6027 887 169 7 0 chr15 19258880 19259016 -82121505 - AluJo SINE Alu -175 137 1 233 292 11 0 chr15 19259812 19259901 -82120620 - L1M4 LINE L1 -1014 5132 5043 265 251 190 39 chr15 19259983 19260262 -82120259 - L1M4 LINE L1 -1273 4873 4553 352 219 68 0 chr15 19260273 19260346 -82120175 - MER2 DNA MER2_type 0 345 268 1475 164 0 0 chr15 19260397 19260617 -82119904 - AluJb SINE Alu -92 220 1 3556 185 58 47 chr15 19260688 19260964 -82119557 - L1MB8 LINE L1 -27 6151 5879 2209 133 0 0 chr15 19260964 19261265 -82119256 - AluSx SINE Alu -11 301 1 3556 185 58 47 chr15 19261265 19261435 -82119086 - L1MB8 LINE L1 -299 5879 5712 1988 171 10 0 chr15 19261435 19261744 -82118777 - AluJo SINE Alu 0 312 1 3556 185 58 47 chr15 19261744 19262396 -82118125 - L1MB8 LINE L1 -466 5712 5068 2385 110 0 0 chr15 19262396 19262697 -82117824 - AluSx SINE Alu -11 301 1 3556 185 58 47 chr15 19262697 19262792 -82117729 - L1MB8 LINE L1 -1110 5068 4975 1636 234 88 47 chr15 19262792 19263373 -82117148 - MER77 LTR ERV1 0 605 1 3556 185 58 47 chr15 19263373 19263534 -82116987 - L1MB8 LINE L1 -1203 4975 4784 677 293 129 38 chr15 19263537 19263618 -82116903 - L1MB8 LINE L1 -2792 3354 3282 1597 106 204 4 chr15 19263618 19263873 -82116648 - AluSx SINE Alu -6 306 1 677 293 129 38 chr15 19263873 19263979 -82116542 - L1MB8 LINE L1 -2864 3282 3187 2269 112 0 10 chr15 19263979 19264317 -82116204 - AluSg SINE Alu 0 310 3 677 293 129 38 chr15 19264317 19264545 -82115976 - L1MB8 LINE L1 -2959 3187 2900 1197 154 0 16 chr15 19265059 19265247 -82115274 + AluJo SINE Alu 121 305 -7 386 293 0 15 chr15 19265630 19265763 -82114758 - AluSq/x SINE Alu -171 131 1 1928 143 4 4 chr15 19265933 19266212 -82114309 - AluJo SINE Alu -33 279 1 2388 103 0 0 chr15 19270182 19270484 -82110037 - AluSg SINE Alu -8 302 1 1935 117 28 24 chr15 19270532 19270822 -82109699 + AluJo SINE Alu 6 296 -16 879 158 168 11 chr15 19271343 19271533 -82108988 + AluJo SINE Alu 88 307 -5 207 69 0 0 chr15 19272318 19272347 -82108174 + (T)n Simple_repeat Simple_repeat 1 29 0 2475 97 3 0 chr15 19272397 19272706 -82107815 - AluSx SINE Alu -2 310 1 1670 164 0 36 chr15 19272733 19273013 -82107508 - AluJb SINE Alu -16 296 27 1778 151 14 17 chr15 19273025 19273316 -82107205 - AluJb SINE Alu -22 290 1 263 309 73 0 chr15 19274069 19274192 -82106329 - L1ME LINE L1 -393 5728 5597 662 147 217 7 chr15 19274752 19274895 -82105626 - AluSc SINE Alu -5 304 132 1054 106 56 0 chr15 19274895 19275037 -82105484 + AluSg/x SINE Alu 143 292 -18 2207 109 7 16 chr15 19275493 19275797 -82104724 + AluSx SINE Alu 1 301 -11 566 75 0 0 chr15 19276136 19276216 -82104305 + L1MA1 LINE L1 6223 6302 0 21 0 0 0 chr15 19276220 19276241 -82104280 + AT_rich Low_complexity Low_complexity 1 21 0 2387 92 3 0 chr15 19277129 19277434 -82103087 + AluSx SINE Alu 6 311 -1 1940 189 26 3 chr15 19277447 19277829 -82102692 - L1PBa LINE L1 -6472 391 1 435 310 59 34 chr15 19277846 19278085 -82102436 + L1M4c LINE L1 1111 1355 -5029 2657 43 0 0 chr15 19279188 19279490 -82101031 + AluY SINE Alu 1 302 -9 2353 109 0 3 chr15 19279545 19279847 -82100674 + AluSx SINE Alu 1 301 -11 2438 81 3 3 chr15 19279894 19280203 -82100318 + AluY SINE Alu 1 309 -2 1529 99 5 19 chr15 19280213 19280426 -82100095 + AluSc SINE Alu 1 210 -99 322 351 55 73 chr15 19280481 19281013 -82099508 + HAL1b LINE L1 59 580 -768 580 243 76 19 chr15 19281275 19281485 -82099036 - Charlie5 DNA MER1_type -32 2580 2359 739 267 67 16 chr15 19284392 19284707 -82095814 - L1MC4 LINE L1 -535 7507 7177 1489 130 0 0 chr15 19284722 19284929 -82095592 - AluSg/x SINE Alu -2 308 102 229 105 26 0 chr15 19285047 19285085 -82095436 - MLT1B LTR MaLR -318 72 34 1977 139 14 0 chr15 19285086 19285366 -82095155 - AluSx SINE Alu -26 286 3 2302 141 31 6 chr15 19285417 19285772 -82094749 - THE1B LTR MaLR 0 364 1 850 223 44 50 chr15 19285789 19285996 -82094525 - L1MC4a LINE L1 -1193 6615 6409 1800 173 0 33 chr15 19285996 19286118 -82094403 + AluJb SINE Alu 1 125 -187 2264 102 3 0 chr15 19286118 19286412 -82094109 - AluY SINE Alu -16 295 1 1800 173 0 33 chr15 19286412 19286595 -82093926 + AluJb SINE Alu 125 296 -16 850 223 44 50 chr15 19286595 19286705 -82093816 - L1MC4a LINE L1 -1399 6409 6300 1151 148 12 0 chr15 19286708 19286877 -82093644 + AluSg/x SINE Alu 133 303 -9 630 339 97 8 chr15 19286898 19287270 -82093251 + L1MEc LINE L1 55 459 -5937 2123 125 20 0 chr15 19287350 19287655 -82092866 + AluSx SINE Alu 1 311 -1 2208 114 0 19 chr15 19287901 19288209 -82092312 - AluSq SINE Alu -11 302 1 975 313 111 25 chr15 19288209 19288822 -82091699 + L1MEc LINE L1 691 1394 -4981 371 228 66 78 chr15 19289279 19289486 -82091035 - MER21B LTR ERV1 -252 353 149 304 229 57 14 chr15 19289613 19289683 -82090838 + HAL1 LINE L1 2272 2344 -163 1674 150 23 19 chr15 19289683 19289820 -82090701 + AluJo SINE Alu 1 141 -171 2486 77 0 0 chr15 19289820 19290117 -82090404 + AluY SINE Alu 1 297 -14 1674 150 23 19 chr15 19290117 19290245 -82090276 + AluJo SINE Alu 141 267 -45 300 190 17 147 chr15 19290262 19290378 -82090143 - L1MCa LINE L1 -4362 2064 1964 2434 93 3 3 chr15 19290544 19290855 -82089666 + AluSp SINE Alu 1 311 -2 2428 92 0 0 chr15 19293686 19293991 -82086530 - AluSx SINE Alu -7 305 1 2093 110 7 33 chr15 19294802 19295102 -82085419 - AluSx SINE Alu -8 304 13 1998 133 23 13 chr15 19296065 19296374 -82084147 - AluSx SINE Alu 0 312 1 1953 135 7 10 chr15 19296386 19296683 -82083838 - AluJb SINE Alu -16 296 1 215 226 119 48 chr15 19297122 19297206 -82083315 - MIR SINE MIR -112 150 61 484 298 63 0 chr15 19297889 19298047 -82082474 - MER68 LTR ERV1 0 562 395 2178 244 47 8 chr15 19298047 19298690 -82081831 + L1MEc LINE L1 2397 3064 -3151 242 200 55 0 chr15 19298727 19298782 -82081739 + L1MEc LINE L1 3040 3097 -3118 2167 118 55 22 chr15 19298850 19299213 -82081308 + THE1C LTR MaLR 1 375 0 8585 109 122 43 chr15 19299213 19299376 -82081145 + THE1C-int LTR MaLR 1 150 -1430 2296 114 0 7 chr15 19299376 19299683 -82080838 - AluSg SINE Alu -5 305 1 8585 109 122 43 chr15 19299683 19300984 -82079537 + THE1C-int LTR MaLR 150 1580 0 2044 134 21 54 chr15 19300984 19301295 -82079226 + THE1C LTR MaLR 1 298 -77 2544 70 0 0 chr15 19301295 19301597 -82078924 - AluY SINE Alu -9 302 1 2044 134 21 54 chr15 19301597 19301673 -82078848 + THE1C LTR MaLR 298 375 0 777 173 0 0 chr15 19302477 19302610 -82077911 - FLAM_C SINE Alu 0 133 1 304 275 200 38 chr15 19304651 19304811 -82075710 - L1 LINE L1 -2102 4044 3859 252 100 0 0 chr15 19305238 19305278 -82075243 + (CACCC)n Simple_repeat Simple_repeat 5 44 0 434 244 76 8 chr15 19305555 19305674 -82074847 + MER3 DNA MER1_type 81 207 -2 320 291 103 29 chr15 19305844 19305971 -82074550 - L1ME LINE L1 -715 5455 5310 2496 75 0 0 chr15 19305971 19306278 -82074243 - AluY SINE Alu -4 307 1 320 291 103 29 chr15 19306278 19306325 -82074196 - L1ME LINE L1 -860 5310 5268 280 350 25 2 chr15 19306480 19306701 -82073820 - L1ME LINE L1 -1036 5110 4882 1245 211 64 49 chr15 19307695 19308084 -82072437 - MSTD LTR MaLR 0 396 2 2155 94 42 3 chr15 19308286 19308572 -82071949 - AluSp SINE Alu -16 297 1 444 293 135 36 chr15 19308766 19308988 -82071533 + HAL1 LINE L1 1317 1560 -947 456 296 57 40 chr15 19308988 19309289 -82071232 + MER46C DNA MER2_type 3 308 -30 24 0 0 0 chr15 19309477 19309501 -82071020 + AT_rich Low_complexity Low_complexity 1 24 0 225 221 58 96 chr15 19309974 19310078 -82070443 - MIR SINE MIR -87 175 76 283 333 41 65 chr15 19311083 19311206 -82069315 + MIR3 SINE MIR 67 186 -22 216 135 0 0 chr15 19311237 19311274 -82069247 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 233 29 29 0 chr15 19311274 19311308 -82069213 + (TG)n Simple_repeat Simple_repeat 2 36 0 2231 134 27 3 chr15 19311506 19311841 -82068680 + MER61A LTR ERV1 1 343 0 1113 204 7 57 chr15 19311841 19312140 -82068381 + MER61A-int LTR ERV1 1 284 -4933 1373 100 0 17 chr15 19312247 19312427 -82068094 - AluSq SINE Alu -136 177 1 26 30 0 0 chr15 19312555 19312588 -82067933 + AT_rich Low_complexity Low_complexity 1 33 0 3511 163 73 9 chr15 19313845 19314506 -82066015 + L1PBa LINE L1 144 846 -6017 395 182 39 0 chr15 19314609 19314686 -82065835 + LTR22B LTR ERVK 413 492 0 2361 111 8 17 chr15 19314688 19315039 -82065482 + HERVK22 LTR ERVK 3 350 -6487 3777 32 0 0 chr15 19315067 19315509 -82065012 - L1PA2 LINE L1 0 6155 5714 4236 96 2 3 chr15 19315509 19316090 -82064431 - HERVK22 LTR ERVK -1327 5510 4929 1504 223 74 43 chr15 19316190 19316647 -82063874 + L1ME4a LINE L1 4801 5276 -890 2235 92 0 39 chr15 19316647 19316953 -82063568 + AluSx SINE Alu 1 294 -18 1504 223 74 43 chr15 19316953 19317303 -82063218 + L1ME4a LINE L1 5276 5614 -552 462 108 0 0 chr15 19317405 19317470 -82063051 - Alu SINE Alu -245 65 1 3276 39 34 17 chr15 19318310 19318775 -82061746 - L1P LINE L1 -2026 4120 3648 1328 30 0 6 chr15 19318771 19318939 -82061582 + L1PA4 LINE L1 5850 6016 -139 * 575 330 29 0 chr15 19319327 19319536 -82060985 + MER58A DNA MER1_type 6 220 -4 2198 161 39 3 chr15 19319635 19320021 -82060500 + MER57A LTR ERV1 1 400 -3 244 274 13 51 chr15 19320305 19320462 -82060059 - L1M4 LINE L1 -2296 3850 3700 9240 67 99 5 chr15 19320719 19322057 -82058464 - L1P LINE L1 -4683 1463 1 898 136 7 0 chr15 19322058 19322198 -82058323 + HERVK22 LTR ERVK 339 479 -6358 401 79 0 0 chr15 19323382 19323445 -82057076 - SVA Other Other -820 566 504 1229 137 6 0 chr15 19323946 19324121 -82056400 + AluSq SINE Alu 1 176 -137 1038 189 62 8 chr15 19324221 19324464 -82056057 - L1P LINE L1 -1762 4384 4129 1938 127 16 13 chr15 19324464 19324779 -82055742 - MER49 LTR ERV1 -599 324 9 2190 61 3 54 chr15 19325196 19325511 -82055010 - AluY SINE Alu 0 300 1 1205 143 25 94 chr15 19325760 19326046 -82054475 - L1M2 LINE L1 -520 5780 5515 378 301 108 75 chr15 19326278 19326704 -82053817 + L1ME4a LINE L1 5650 6089 -32 2424 67 0 7 chr15 19328408 19328706 -82051815 - AluY SINE Alu -15 296 1 230 242 105 42 chr15 19328707 19328802 -82051719 - MIR SINE MIR -87 121 21 2298 82 0 26 chr15 19328912 19329075 -82051446 - AluY SINE Alu -16 295 142 2206 98 0 20 chr15 19329075 19329381 -82051140 - AluSg SINE Alu -10 300 1 2298 82 0 26 chr15 19329381 19329520 -82051001 - AluY SINE Alu -169 142 1 395 277 77 51 chr15 19330207 19330630 -82049891 - MER41E LTR ERV1 -59 453 148 193 360 120 0 chr15 19330920 19331045 -82049476 - L2 LINE L2 0 3272 3133 734 268 122 20 chr15 19331188 19331483 -82049038 + L2 LINE L2 2989 3313 0 924 268 92 68 chr15 19331762 19332588 -82047933 + HAL1 LINE L1 446 1291 -1216 3001 123 69 2 chr15 19332658 19333163 -82047358 - L1MC1 LINE L1 -1 6332 5794 216 0 0 0 chr15 19333263 19333287 -82047234 + (A)n Simple_repeat Simple_repeat 1 24 0 1703 113 117 25 chr15 19333704 19333838 -82046683 - AluSq SINE Alu -14 299 179 2568 62 0 10 chr15 19333838 19334146 -82046375 - AluY SINE Alu -4 307 3 1703 113 117 25 chr15 19334146 19334285 -82046236 - AluSq SINE Alu -134 179 1 383 247 47 40 chr15 19334329 19334479 -82046042 + L1MC5 LINE L1 7539 7689 -272 1605 173 43 56 chr15 19334635 19334823 -82045698 - L1PA16 LINE L1 -27 6139 5957 1864 120 25 11 chr15 19334823 19334998 -82045523 - AluJb SINE Alu -2 310 128 2519 57 0 10 chr15 19334998 19335297 -82045224 - AluY SINE Alu -15 296 1 1864 120 25 11 chr15 19335297 19335404 -82045117 - AluJb SINE Alu -184 128 24 1605 173 43 56 chr15 19335404 19335590 -82044931 - L1PA16 LINE L1 -209 5957 5770 469 98 0 0 chr15 19335692 19335753 -82044768 - Alu SINE Alu -256 62 2 2227 78 0 0 chr15 19335797 19336066 -82044455 + AluY SINE Alu 30 298 -13 2143 97 55 0 chr15 19336660 19336950 -82043571 + AluSg SINE Alu 1 306 -4 388 77 0 0 chr15 19337079 19337136 -82043385 - L1PB4 LINE L1 -210 5951 5895 270 128 0 0 chr15 19337137 19337176 -82043345 + L1PB4 LINE L1 5954 5992 -164 482 101 0 0 chr15 19337177 19337246 -82043275 - MER50 LTR ERV1 -167 567 499 584 95 19 38 chr15 19337343 19337448 -82043073 + L1PB4 LINE L1 6053 6155 -1 217 265 20 0 chr15 19337656 19337705 -82042816 + L2 LINE L2 3196 3245 -27 2239 93 28 0 chr15 19337712 19338003 -82042518 + AluSp SINE Alu 1 299 -14 458 162 81 0 chr15 19338003 19338102 -82042419 + FLAM_C SINE Alu 34 140 -3 1268 130 27 45 chr15 19338246 19338336 -82042185 + MER50 LTR ERV1 504 594 -140 2128 122 3 0 chr15 19338336 19338623 -82041898 + AluSx SINE Alu 5 292 -20 1268 130 27 45 chr15 19338623 19338755 -82041766 + MER50 LTR ERV1 594 722 -12 1870 156 25 15 chr15 19338755 19339081 -82041440 + MER50-int LTR ERV1 7 335 -6870 2109 97 17 3 chr15 19339136 19339424 -82041097 + AluSq SINE Alu 1 292 -21 2368 77 0 10 chr15 19339628 19339927 -82040594 + AluY SINE Alu 1 296 -15 2068 115 14 10 chr15 19339969 19340264 -82040257 + AluSx SINE Alu 1 296 -16 2417 61 3 10 chr15 19340264 19340558 -82039963 + AluY SINE Alu 1 293 -18 1314 101 0 0 chr15 19340567 19340735 -82039786 + AluSg/x SINE Alu 133 300 -12 282 155 69 0 chr15 19340799 19340857 -82039664 + L1ME4a LINE L1 6059 6120 -1 789 189 0 0 chr15 19341172 19341304 -82039217 + FLAM_C SINE Alu 2 133 0 27 49 0 0 chr15 19341318 19341359 -82039162 + AT_rich Low_complexity Low_complexity 1 41 0 1671 145 53 18 chr15 19341553 19341835 -82038686 + AluJo SINE Alu 1 292 -20 1706 150 63 3 chr15 19343243 19343577 -82036944 - L1MB3 LINE L1 -4 6179 5826 2105 193 23 2 chr15 19343636 19344071 -82036450 + L1 LINE L1 4575 5018 -1128 1813 128 0 4 chr15 19344071 19344336 -82036185 + AluSx SINE Alu 39 302 -10 261 0 0 0 chr15 19344880 19344909 -82035612 + (TA)n Simple_repeat Simple_repeat 2 30 0 2236 108 0 7 chr15 19344927 19345223 -82035298 - AluSg SINE Alu -16 294 1 22 0 0 0 chr15 19345482 19345504 -82035017 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr15 19345787 19345815 -82034706 + AT_rich Low_complexity Low_complexity 1 28 0 341 306 121 42 chr15 19346955 19347507 -82033014 + HAL1b LINE L1 293 888 -460 31 58 0 0 chr15 19347765 19347817 -82032704 + AT_rich Low_complexity Low_complexity 1 52 0 23 92 0 0 chr15 19347948 19348013 -82032508 + AT_rich Low_complexity Low_complexity 1 65 0 259 286 62 51 chr15 19348170 19348348 -82032173 - L1ME LINE L1 -5879 191 12 2349 86 0 3 chr15 19349364 19349658 -82030863 + AluY SINE Alu 1 295 -16 282 29 0 0 chr15 19349658 19349693 -82030828 + (CATA)n Simple_repeat Simple_repeat 2 36 0 308 244 126 0 chr15 19350677 19350812 -82029709 - MER103 DNA DNA -2 164 13 514 249 83 28 chr15 19351134 19351351 -82029170 - L1MC/D LINE L1 -2326 5482 5254 343 274 139 30 chr15 19351676 19351877 -82028644 - L1MC/D LINE L1 -1300 4846 4624 2548 61 0 0 chr15 19351937 19352232 -82028289 - AluY SINE Alu -16 295 1 764 206 23 29 chr15 19352247 19352422 -82028099 - FAM SINE Alu 0 175 2 656 201 61 0 chr15 19353313 19353477 -82027044 - MER3 DNA MER1_type -30 179 6 447 225 81 38 chr15 19353854 19354014 -82026507 + L1MC5 LINE L1 7745 7911 -50 229 219 0 16 chr15 19354486 19354550 -82025971 + MIR SINE MIR 170 232 -30 564 144 136 16 chr15 19354694 19354819 -82025702 - MER20 DNA MER1_type 0 219 80 1372 136 219 0 chr15 19354833 19355075 -82025446 + AluJb SINE Alu 1 295 -7 435 219 8 62 chr15 19356406 19356534 -82023987 - L1MEd LINE L1 -4916 1203 1083 2034 88 58 49 chr15 19356550 19356858 -82023663 - AluSq SINE Alu -2 311 1 770 227 194 33 chr15 19356862 19357362 -82023159 - MLT1E2 LTR MaLR 0 626 2 1681 159 48 27 chr15 19358258 19358553 -82021968 + AluJo SINE Alu 1 301 -11 677 172 35 48 chr15 19360566 19360711 -82019810 + MER106B DNA MER1_type 904 1046 -13 250 268 204 14 chr15 19363190 19363332 -82017189 - MIR SINE MIR -1 261 93 2530 58 0 0 chr15 19363374 19363666 -82016855 - AluY SINE Alu -18 293 2 1119 129 13 0 chr15 19363771 19363926 -82016595 + AluSg/x SINE Alu 135 291 -21 311 311 105 16 chr15 19363926 19364116 -82016405 + HAL1 LINE L1 127 333 -2174 248 213 200 12 chr15 19364242 19364322 -82016199 + HAL1 LINE L1 590 684 -1823 2536 57 3 0 chr15 19364345 19364642 -82015879 + AluY SINE Alu 1 298 -13 233 258 0 34 chr15 19365096 19365185 -82015336 + L1ME LINE L1 298 383 -5687 1846 162 6 16 chr15 19365415 19365730 -82014791 + AluSx SINE Alu 1 312 0 1222 136 0 0 chr15 19365730 19365907 -82014614 + AluJb SINE Alu 134 310 -2 1206 238 98 27 chr15 19366169 19366451 -82014070 + HAL1 LINE L1 1030 1290 -1217 2448 84 0 0 chr15 19366451 19366749 -82013772 + AluSq SINE Alu 1 298 -15 1206 238 98 27 chr15 19366749 19366762 -82013759 + HAL1 LINE L1 1290 1301 -1206 1735 167 21 10 chr15 19366762 19367050 -82013471 + AluSx SINE Alu 1 291 -21 1206 238 98 27 chr15 19367050 19367722 -82012799 + HAL1 LINE L1 1301 2150 -357 316 253 0 0 chr15 19367762 19367849 -82012672 + HAL1 LINE L1 2278 2364 -143 1998 122 40 3 chr15 19368479 19368775 -82011746 + AluSx SINE Alu 1 307 -5 2541 74 0 0 chr15 19369207 19369518 -82011003 + AluY SINE Alu 1 311 0 2160 123 13 0 chr15 19369595 19369903 -82010618 - AluSx SINE Alu 0 312 1 2455 76 0 3 chr15 19370385 19370687 -82009834 - AluY SINE Alu -10 301 1 22 0 0 0 chr15 19370823 19370845 -82009676 + AT_rich Low_complexity Low_complexity 1 22 0 2537 82 0 0 chr15 19370940 19371244 -82009277 - AluSx SINE Alu -8 304 1 306 305 89 39 chr15 19371268 19371343 -82009178 - L2 LINE L2 -33 3280 3210 2312 81 0 33 chr15 19371343 19371650 -82008871 - AluSx SINE Alu -15 297 1 306 305 89 39 chr15 19371650 19371777 -82008744 - L2 LINE L2 -103 3210 3068 295 197 135 16 chr15 19371927 19372059 -82008462 - L1M2 LINE L1 -587 5575 5414 302 315 16 31 chr15 19372123 19372250 -82008271 - L1M4 LINE L1 -846 5300 5176 1094 199 93 31 chr15 19372627 19372918 -82007603 - MLT1F LTR MaLR -213 329 21 883 282 35 47 chr15 19372935 19373339 -82007182 + L2 LINE L2 2910 3308 -5 2212 87 13 20 chr15 19373370 19373668 -82006853 - AluSp SINE Alu -17 296 1 2241 87 13 10 chr15 19374055 19374353 -82006168 - AluSq SINE Alu -14 299 1 1804 269 92 2 chr15 19374451 19375083 -82005438 + MER20B DNA MER1_type 34 722 -61 2235 77 50 10 chr15 19375635 19375933 -82004588 + AluY SINE Alu 1 310 -1 1923 162 0 16 chr15 19376674 19376988 -82003533 - AluJo SINE Alu -3 309 1 255 197 26 40 chr15 19377608 19377684 -82002837 - MIR SINE MIR -115 147 73 213 39 0 0 chr15 19378077 19378103 -82002418 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 2167 96 3 3 chr15 19378103 19378385 -82002136 - AluSx SINE Alu -30 282 1 774 177 67 34 chr15 19378392 19378440 -82002081 - L1M4 LINE L1 -821 5325 5280 2179 106 13 3 chr15 19378440 19378742 -82001779 - AluSq SINE Alu -7 306 2 774 177 67 34 chr15 19378742 19378902 -82001619 - L1M4 LINE L1 -866 5280 5110 409 206 0 0 chr15 19378903 19378971 -82001550 - AluS SINE Alu -233 68 1 763 177 35 91 chr15 19378972 19379077 -82001444 - L1M4 LINE L1 -1716 4430 4321 2359 70 0 10 chr15 19379077 19379379 -82001142 - AluY SINE Alu -12 299 1 2242 84 3 0 chr15 19379383 19379681 -82000840 - AluSq SINE Alu -13 300 2 2190 100 3 13 chr15 19379689 19379998 -82000523 - AluSx SINE Alu -6 306 1 763 177 35 91 chr15 19379998 19380110 -82000411 - L1M4 LINE L1 -1835 4311 4212 2167 109 3 0 chr15 19380110 19380413 -82000108 + AluSx SINE Alu 2 305 -7 2179 98 3 0 chr15 19380413 19380709 -81999812 + AluSg SINE Alu 1 297 -13 2137 91 3 10 chr15 19381602 19381899 -81998622 - AluSx SINE Alu -17 295 1 24 32 0 0 chr15 19382559 19382590 -81997931 + AT_rich Low_complexity Low_complexity 1 31 0 218 287 92 46 chr15 19383399 19383486 -81997035 - L2 LINE L2 0 3272 3182 454 250 31 31 chr15 19383649 19383809 -81996712 + MLT1H LTR MaLR 98 257 -292 276 191 90 34 chr15 19384024 19384113 -81996408 + L1MC5 LINE L1 7845 7994 -1 2242 70 3 13 chr15 19384222 19384520 -81996001 + AluY SINE Alu 1 295 -16 2047 132 7 3 chr15 19385230 19385540 -81994981 - AluSx SINE Alu -1 311 1 463 217 0 0 chr15 19385595 19385687 -81994834 + FLAM_A SINE Alu 39 130 -12 2334 93 0 0 chr15 19385986 19386299 -81994222 + AluSp SINE Alu 1 313 0 2011 117 3 3 chr15 19386322 19386620 -81993901 + AluSg SINE Alu 1 298 -12 2108 111 0 0 chr15 19386879 19387176 -81993345 + AluSc SINE Alu 1 297 -12 2167 78 7 14 chr15 19387180 19387476 -81993045 + AluY SINE Alu 1 294 -17 1445 222 90 41 chr15 19387477 19387898 -81992623 + L1ME2 LINE L1 4740 5139 -1007 2131 92 0 44 chr15 19387898 19388041 -81992480 + AluSg SINE Alu 1 149 -161 2028 127 0 3 chr15 19388041 19388340 -81992181 + AluSx SINE Alu 1 298 -14 2379 76 0 0 chr15 19388340 19388643 -81991878 + AluY SINE Alu 1 303 -8 2131 92 0 44 chr15 19388643 19388815 -81991706 + AluSg SINE Alu 147 303 -7 1445 222 90 41 chr15 19388815 19388902 -81991619 + L1ME2 LINE L1 5139 5273 -873 182 222 19 0 chr15 19388920 19388974 -81991547 + (TA)n Simple_repeat Simple_repeat 1 55 0 344 160 0 27 chr15 19389014 19389062 -81991459 + Alu SINE Alu 2 29 -274 1962 115 0 36 chr15 19389062 19389367 -81991154 + AluSx SINE Alu 1 294 -18 344 160 0 27 chr15 19389367 19389387 -81991134 + Alu SINE Alu 29 48 -255 1436 223 67 16 chr15 19389393 19389766 -81990755 + L1ME2 LINE L1 5773 6164 0 471 209 18 27 chr15 19389799 19389909 -81990612 + L1MA10 LINE L1 6222 6330 -4 2269 97 0 0 chr15 19389909 19390207 -81990314 - AluSg SINE Alu -12 298 1 403 208 24 7 chr15 19390464 19390561 -81989960 - AluJ/FLAM SINE Alu -219 83 1 1038 202 179 22 chr15 19390655 19391052 -81989469 + LTR53 LTR ERVL 1 519 0 216 132 105 0 chr15 19392108 19392146 -81988375 - L2 LINE L2 -10 3262 3221 204 67 0 0 chr15 19392296 19392326 -81988195 + (TTG)n Simple_repeat Simple_repeat 1 30 0 734 239 6 12 chr15 19392326 19392489 -81988032 - AluJo SINE Alu -33 279 118 1983 108 18 0 chr15 19392512 19392798 -81987723 - AluSg SINE Alu -19 291 1 949 97 8 0 chr15 19393080 19393214 -81987307 + AluSq/x SINE Alu 1 135 -178 1731 231 55 4 chr15 19393316 19393767 -81986754 - L1M4 LINE L1 -2001 4145 3672 1441 155 109 53 chr15 19393767 19394051 -81986470 - AluSx SINE Alu -2 300 1 515 189 47 142 chr15 19394115 19394343 -81986178 + L1MC4 LINE L1 7708 7891 -151 968 205 85 0 chr15 19394343 19394543 -81985978 + MER20 DNA MER1_type 1 217 -2 515 189 47 142 chr15 19394543 19394673 -81985848 + L1MC4 LINE L1 7891 8032 -10 798 69 8 10 chr15 19394913 19395160 -81985361 + AluY SINE Alu 1 303 -8 297 255 71 20 chr15 19395956 19396054 -81984467 + LTR52 LTR ERVL 4 106 -315 209 200 14 29 chr15 19396071 19396141 -81984380 + A-rich Low_complexity Low_complexity 4 72 0 1951 138 0 3 chr15 19396746 19397044 -81983477 - AluSx SINE Alu -15 297 1 1793 149 14 0 chr15 19397793 19398088 -81982433 - AluJb SINE Alu -13 299 1 2202 70 3 23 chr15 19399357 19399656 -81980865 - AluSp SINE Alu -20 293 1 1935 127 14 0 chr15 19399656 19399947 -81980574 - AluSx SINE Alu -17 295 1 2008 147 0 0 chr15 19400003 19400309 -81980212 - AluSx SINE Alu -6 306 1 564 266 157 4 chr15 19400397 19400444 -81980077 + L1MC4 LINE L1 7037 7075 -813 1817 163 0 3 chr15 19400444 19400738 -81979783 + AluJo SINE Alu 1 293 -19 564 266 157 4 chr15 19400738 19400933 -81979588 + L1MC4 LINE L1 7075 7389 -499 376 265 23 45 chr15 19401243 19401326 -81979195 + L1M4b LINE L1 14 97 -6762 2021 95 0 21 chr15 19401326 19401610 -81978911 + AluY SINE Alu 1 278 -33 198 0 0 0 chr15 19401610 19401632 -81978889 + (CA)n Simple_repeat Simple_repeat 1 22 0 376 265 23 45 chr15 19401632 19401679 -81978842 + L1M4b LINE L1 95 142 -6717 * 586 149 39 0 chr15 19401676 19401809 -81978712 - L1M4 LINE L1 -2837 3309 3167 1088 133 0 12 chr15 19401812 19401977 -81978544 - AluSg/x SINE Alu -14 296 134 1079 157 0 0 chr15 19403022 19403194 -81977327 - AluSp SINE Alu -6 307 136 465 206 277 37 chr15 19403305 19403450 -81977071 - L1MC3 LINE L1 -169 7739 7630 2057 98 7 0 chr15 19403450 19403746 -81976775 - AluY SINE Alu -13 298 1 465 206 277 37 chr15 19403746 19403844 -81976677 - L1MC3 LINE L1 -278 7630 7344 291 200 0 71 chr15 19404984 19405124 -81975397 + C-rich Low_complexity Low_complexity 4 133 0 267 31 0 0 chr15 19405262 19405294 -81975227 + (CCG)n Simple_repeat Simple_repeat 3 34 0 328 251 16 64 chr15 19405357 19405544 -81974977 + G-rich Low_complexity Low_complexity 3 180 0 2373 68 0 0 chr15 19405869 19406180 -81974341 + AluY SINE Alu 1 311 0 22 56 0 0 chr15 19406208 19406244 -81974277 + AT_rich Low_complexity Low_complexity 1 36 0 793 76 9 0 chr15 19406537 19406642 -81973879 - AluSq/x SINE Alu -205 107 2 1404 158 41 21 chr15 19406682 19406973 -81973548 + AluJo SINE Alu 1 297 -15 2124 64 3 71 chr15 19407034 19407360 -81973161 + AluY SINE Alu 1 304 -7 437 263 89 0 chr15 19407398 19407577 -81972944 - HAL1b LINE L1 -183 1165 971 1644 141 16 4 chr15 19407585 19407841 -81972680 + AluJb SINE Alu 1 259 -53 2239 75 7 0 chr15 19407964 19408259 -81972262 + AluSq SINE Alu 1 297 -16 609 234 208 19 chr15 19408504 19408773 -81971748 - L1MA9 LINE L1 -36 6276 5957 223 273 208 26 chr15 19408958 19409112 -81971409 - MIR SINE MIR 0 262 81 2291 71 0 7 chr15 19409171 19409480 -81971041 + AluSx SINE Alu 1 307 -5 1475 167 29 0 chr15 19409551 19409832 -81970689 + AluJb SINE Alu 1 289 -23 2273 67 0 0 chr15 19411413 19411712 -81968809 + AluY SINE Alu 1 299 -12 2183 85 7 0 chr15 19411722 19412027 -81968494 + AluSg SINE Alu 1 307 -3 1959 63 0 12 chr15 19412298 19412450 -81968071 - AluSc SINE Alu -26 283 134 2269 70 3 13 chr15 19412450 19412748 -81967773 - AluSg SINE Alu -15 295 1 1959 63 0 12 chr15 19412748 19412848 -81967673 - AluSc SINE Alu -175 134 34 428 119 415 0 chr15 19413483 19413601 -81966920 + MLT1H LTR MaLR 1 167 -382 355 227 76 42 chr15 19413709 19413828 -81966693 + MLT1H LTR MaLR 427 549 0 1315 103 0 73 chr15 19413862 19414066 -81966455 + MER1B DNA MER1_type 151 339 0 820 199 51 0 chr15 19414421 19414577 -81965944 + L1ME1 LINE L1 5526 5689 -475 2019 91 16 26 chr15 19414577 19414885 -81965636 + AluY SINE Alu 1 305 -6 966 279 20 26 chr15 19414891 19415239 -81965282 + L1ME1 LINE L1 5816 6161 -5 8589 60 7 10 chr15 19415533 19416607 -81963914 + MER11C LTR ERVK 1 1071 0 2089 220 45 6 chr15 19416861 19417347 -81963174 + MLT1D LTR MaLR 1 505 0 2201 82 3 3 chr15 19417624 19417917 -81962604 - AluSp SINE Alu -20 293 1 1052 116 107 28 chr15 19418418 19418633 -81961888 + AluJo SINE Alu 81 312 0 2274 97 0 3 chr15 19418900 19419208 -81961313 - AluSg SINE Alu -3 307 1 216 0 0 0 chr15 19419210 19419234 -81961287 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2121 99 3 0 chr15 19419234 19419517 -81961004 - AluSp SINE Alu -29 284 1 1912 142 3 7 chr15 19419565 19419868 -81960653 - AluSx SINE Alu -10 302 1 279 324 27 26 chr15 19420885 19421048 -81959473 - MIR SINE MIR -26 182 23 1868 177 42 0 chr15 19424402 19424736 -81955785 + MER7A DNA MER2_type 1 346 0 1390 74 69 0 chr15 19426271 19426460 -81954061 + AluSg SINE Alu 1 202 -108 907 114 15 0 chr15 19426866 19426998 -81953523 - AluSg/x SINE Alu -20 290 157 607 217 56 35 chr15 19427092 19427235 -81953286 - LTR8 LTR ERV1 -545 146 1 1454 123 0 0 chr15 19427254 19427465 -81953056 - AluSx SINE Alu -8 302 92 731 153 9 0 chr15 19427556 19427667 -81952854 - AluSx SINE Alu -199 113 2 1618 180 30 0 chr15 19427693 19427988 -81952533 + AluJb SINE Alu 1 304 -8 4307 215 23 25 chr15 19427988 19429013 -81951508 + L1MA9 LINE L1 5260 6282 -30 1852 231 46 104 chr15 19429104 19429837 -81950684 - LTR34 LTR ERV1 -8 691 1 689 316 69 9 chr15 19429871 19430304 -81950217 + L1M4 LINE L1 2380 2838 -3308 274 209 55 22 chr15 19430320 19430411 -81950110 + L1M4 LINE L1 3184 3277 -2869 745 269 95 37 chr15 19430515 19430731 -81949790 + L1M4 LINE L1 3449 3651 -2495 2209 99 0 20 chr15 19430731 19431068 -81949453 + AluY SINE Alu 3 311 0 745 269 95 37 chr15 19431068 19431335 -81949186 + L1M4 LINE L1 3651 3960 -2186 2176 95 3 23 chr15 19431424 19431728 -81948793 + AluSg SINE Alu 1 298 -12 252 188 43 29 chr15 19431925 19431994 -81948527 + MLT1J LTR MaLR 391 460 -51 539 134 12 0 chr15 19432089 19432171 -81948350 - AluS SINE Alu -226 87 5 279 314 64 29 chr15 19434317 19434457 -81946064 + MIR SINE MIR 48 192 -70 235 274 60 17 chr15 19434598 19434715 -81945806 + L2 LINE L2 3187 3308 -5 250 154 39 0 chr15 19436048 19436100 -81944421 + L1MC4a LINE L1 5885 5938 -1870 222 91 0 0 chr15 19436104 19436137 -81944384 + (TG)n Simple_repeat Simple_repeat 2 34 0 473 254 179 20 chr15 19436331 19436532 -81943989 + MIR SINE MIR 20 252 -10 1348 101 0 0 chr15 19436665 19436843 -81943678 + AluSp SINE Alu 136 313 0 191 323 0 0 chr15 19437182 19437247 -81943274 + MIR SINE MIR 53 117 -91 255 324 0 0 chr15 19437858 19437994 -81942527 + (CAG)n Simple_repeat Simple_repeat 3 138 0 530 280 0 1 chr15 19437999 19439770 -81940751 + GA-rich Low_complexity Low_complexity 1 1768 0 270 261 0 0 chr15 19439804 19439980 -81940541 + GA-rich Low_complexity Low_complexity 3 178 0 367 222 0 17 chr15 19440014 19440190 -81940331 + GA-rich Low_complexity Low_complexity 3 175 0 223 212 0 26 chr15 19440245 19440358 -81940163 + GA-rich Low_complexity Low_complexity 3 112 0 394 305 0 0 chr15 19440392 19440520 -81940001 + GA-rich Low_complexity Low_complexity 3 130 0 806 156 17 67 chr15 19440867 19441046 -81939475 + AluSg/x SINE Alu 126 295 -15 2202 112 3 0 chr15 19441690 19441986 -81938535 - AluSx SINE Alu -15 297 1 638 220 52 6 chr15 19442006 19442179 -81938342 - L1ME2 LINE L1 -2 6162 5982 881 172 0 0 chr15 19443062 19443196 -81937325 + FRAM SINE Alu 18 151 -25 2323 78 0 3 chr15 19443238 19443532 -81936989 + AluY SINE Alu 1 293 -18 2531 165 92 0 chr15 19443538 19444059 -81936462 + L1MB3 LINE L1 5607 6175 -8 26 30 0 0 chr15 19444059 19444092 -81936429 + AT_rich Low_complexity Low_complexity 1 33 0 630 179 49 0 chr15 19444421 19444544 -81935977 + LTR53 LTR ERVL 351 479 -40 2190 254 99 14 chr15 19444617 19445395 -81935126 + L1ME1 LINE L1 5320 6163 -3 2381 96 0 0 chr15 19445409 19445711 -81934810 + AluSg SINE Alu 5 306 -4 2138 130 0 0 chr15 19446077 19446376 -81934145 + AluSx SINE Alu 1 299 -13 961 240 35 47 chr15 19446623 19446699 -81933822 + MER58B DNA MER1_type 3 78 -2342 1663 103 117 43 chr15 19446699 19446981 -81933540 - AluSx SINE Alu -9 303 1 961 240 35 47 chr15 19446981 19447246 -81933275 + MER58B DNA MER1_type 78 340 -1 888 152 0 0 chr15 19447651 19447783 -81932738 + AluJo/FLAM SINE Alu 1 132 -180 1913 125 68 0 chr15 19447786 19447912 -81932609 + AluSx SINE Alu 1 117 -195 1561 109 14 0 chr15 19447912 19448123 -81932398 + AluSg SINE Alu 12 225 -85 1913 125 68 0 chr15 19448123 19448277 -81932244 + AluSx SINE Alu 117 300 -12 2182 120 3 0 chr15 19448437 19448738 -81931783 + AluSg SINE Alu 3 304 -6 210 324 0 45 chr15 19449812 19449923 -81930598 + GA-rich Low_complexity Low_complexity 4 109 0 2403 74 0 0 chr15 19450036 19450333 -81930188 - AluY SINE Alu -14 297 1 2028 122 31 0 chr15 19451014 19451302 -81929219 - AluSx SINE Alu -15 297 1 531 284 122 53 chr15 19451446 19452162 -81928359 - L1M4 LINE L1 -1719 4427 3663 1933 95 103 0 chr15 19452205 19452467 -81928054 + AluSx SINE Alu 1 289 -23 456 278 97 72 chr15 19452785 19453216 -81927305 - HAL1b LINE L1 -837 511 70 2039 126 11 52 chr15 19453403 19453751 -81926770 - MER1B DNA MER1_type -1 336 3 7271 33 7 3 chr15 19454672 19455541 -81924980 + L1PA4 LINE L1 5284 6155 0 2633 46 0 0 chr15 19457135 19457437 -81923084 + AluY SINE Alu 2 303 -8 640 282 55 35 chr15 19458071 19458326 -81922195 - MIR SINE MIR 0 262 3 260 296 9 28 chr15 19458404 19458512 -81922009 + (CAGAGA)n Simple_repeat Simple_repeat 2 107 0 1616 169 59 10 chr15 19458596 19458886 -81921635 + AluJb SINE Alu 1 304 -8 215 250 15 0 chr15 19459401 19459469 -81921052 + GA-rich Low_complexity Low_complexity 4 72 0 372 181 188 169 chr15 19459663 19460072 -81920449 + L1MC4a LINE L1 5849 6265 -1543 390 288 106 25 chr15 19460141 19460301 -81920220 + MIR SINE MIR 73 245 -17 376 291 85 16 chr15 19461020 19461240 -81919281 - L2 LINE L2 -276 3037 2804 1096 198 81 102 chr15 19461274 19461608 -81918913 - MER58B DNA MER1_type -10 331 5 2340 75 0 4 chr15 19461685 19461989 -81918532 + AluSc SINE Alu 1 303 0 190 276 52 0 chr15 19462157 19462215 -81918306 + L2 LINE L2 3252 3312 -1 326 279 36 36 chr15 19462456 19462567 -81917954 - MER91A DNA MER1_type -20 176 66 214 341 37 24 chr15 19463942 19464024 -81916497 + L2 LINE L2 3168 3250 -22 1893 166 0 0 chr15 19465587 19465897 -81914624 + AluJb SINE Alu 1 310 0 333 242 54 33 chr15 19466806 19466983 -81913538 - MER58C DNA MER1_type -9 206 9 415 248 35 0 chr15 19467390 19467503 -81913018 + L1MEd LINE L1 598 714 -5405 * 1101 194 107 4 chr15 19467501 19467743 -81912778 + L1MD3 LINE L1 7729 7995 0 428 224 36 12 chr15 19467750 19467915 -81912606 + L1MEd LINE L1 699 867 -5252 24 0 0 0 chr15 19468525 19468549 -81911972 + AT_rich Low_complexity Low_complexity 1 24 0 2253 102 3 0 chr15 19468728 19469022 -81911499 + AluSx SINE Alu 6 300 -12 2810 194 79 70 chr15 19469559 19469590 -81910931 + L1ME1 LINE L1 5194 5223 -943 2635 115 32 32 chr15 19469590 19470024 -81910497 + Tigger2a DNA MER2_type 1 434 0 2810 194 79 70 chr15 19470024 19470905 -81909616 + L1ME1 LINE L1 5223 6101 -65 228 351 0 18 chr15 19470812 19470913 -81909608 + L1MA10 LINE L1 6169 6269 -65 * 1689 139 9 89 chr15 19470913 19471250 -81909271 + AluJo SINE Alu 1 310 -2 2182 107 3 0 chr15 19472170 19472468 -81908053 + AluSx SINE Alu 1 299 -13 837 209 39 2 chr15 19472470 19472676 -81907845 + MIR SINE MIR 31 241 -21 2414 64 0 0 chr15 19473347 19473656 -81906865 - AluY SINE Alu 0 309 1 189 121 0 0 chr15 19473913 19473946 -81906575 + (CA)n Simple_repeat Simple_repeat 2 34 0 2039 141 0 7 chr15 19475963 19476262 -81904259 + AluSx SINE Alu 1 297 -15 29 0 0 0 chr15 19476284 19476313 -81904208 + AT_rich Low_complexity Low_complexity 1 29 0 2143 98 0 54 chr15 19476698 19477014 -81903507 - AluSg SINE Alu -11 299 1 207 0 0 0 chr15 19478074 19478097 -81902424 + (CA)n Simple_repeat Simple_repeat 2 24 0 2028 125 0 34 chr15 19478920 19479217 -81901304 + AluSx SINE Alu 1 287 -25 1184 179 0 5 chr15 19679290 19679485 -81701036 + MLT1A1 LTR MaLR 172 365 0 2973 277 58 64 chr15 19679647 19679798 -81700723 + L2 LINE L2 1531 1681 -1632 3486 47 21 36 chr15 19679798 19680138 -81700383 - L1PA8 LINE L1 -2 6170 5837 2348 110 0 0 chr15 19680138 19680439 -81700082 - AluSg SINE Alu -7 303 3 3486 47 21 36 chr15 19680439 19680570 -81699951 - L1PA8 LINE L1 -335 5837 5706 2973 277 58 64 chr15 19680570 19680723 -81699798 + L2 LINE L2 1681 1833 -1480 2367 79 0 23 chr15 19680723 19681026 -81699495 - AluY SINE Alu -13 298 3 2973 277 58 64 chr15 19681026 19681880 -81698641 + L2 LINE L2 1833 2676 -637 2529 70 0 6 chr15 19681880 19682193 -81698328 + AluY SINE Alu 1 311 0 2973 277 58 64 chr15 19682193 19682828 -81697693 + L2 LINE L2 2676 3313 0 2191 109 3 0 chr15 19683050 19683353 -81697168 - AluY SINE Alu -7 304 1 2274 141 0 57 chr15 19683442 19683715 -81696806 + L1PA13 LINE L1 5767 6010 -153 2350 78 0 0 chr15 19683715 19684035 -81696486 + AluY SINE Alu 1 320 0 2274 141 0 57 chr15 19684035 19684180 -81696341 + L1PA13 LINE L1 6010 6162 -1 358 241 8 0 chr15 19684265 19684521 -81696000 + (CA)n Simple_repeat Simple_repeat 1 258 0 471 291 0 22 chr15 19684572 19684754 -81695767 + (CA)n Simple_repeat Simple_repeat 1 178 0 408 264 9 5 chr15 19684765 19684984 -81695537 + (CA)n Simple_repeat Simple_repeat 1 220 0 514 294 0 17 chr15 19685091 19685271 -81695250 + (CA)n Simple_repeat Simple_repeat 2 178 0 195 114 0 0 chr15 19685332 19685367 -81695154 + (CA)n Simple_repeat Simple_repeat 2 36 0 278 342 80 35 chr15 19685945 19686343 -81694178 + L2 LINE L2 2288 2703 -611 194 350 117 15 chr15 19687688 19687825 -81692696 + L2 LINE L2 2916 3066 -206 493 269 15 8 chr15 19688436 19688570 -81691951 - L2 LINE L2 0 3313 3179 5687 129 25 18 chr15 19688658 19689605 -81690916 - L1PA15 LINE L1 0 6165 5213 * 10225 228 32 7 chr15 19689593 19692128 -81688393 - L1PA15 LINE L1 -1270 4876 2280 811 285 90 42 chr15 19693250 19693629 -81686892 + MLT1J2 LTR MaLR 39 435 -15 552 335 41 61 chr15 19693648 19694161 -81686360 - L2 LINE L2 -261 3052 2549 2951 191 20 42 chr15 19694238 19694831 -81685690 + LTR22 LTR ERVK 1 580 0 2291 231 23 0 chr15 19695538 19696101 -81684420 - L1M4 LINE L1 -813 5333 4758 1602 224 107 95 chr15 19696093 19696651 -81683870 - L1M4 LINE L1 -2069 4077 3507 * 2461 44 0 17 chr15 19696651 19696944 -81683577 + AluY SINE Alu 1 288 -23 1602 224 107 95 chr15 19696944 19697083 -81683438 - L1M4 LINE L1 -2639 3507 3371 398 253 11 0 chr15 19697227 19697318 -81683203 - L1MCb LINE L1 -5880 165 74 2061 113 3 33 chr15 19697963 19698264 -81682257 - AluSx SINE Alu -20 292 1 2155 120 0 23 chr15 19698533 19698841 -81681680 - AluSx SINE Alu -11 301 1 2483 47 7 3 chr15 19699235 19699533 -81680988 - AluY SINE Alu -12 299 1 2091 281 103 20 chr15 19699655 19700472 -81680049 + L1MD2 LINE L1 272 1156 -5384 2513 214 27 102 chr15 19700510 19701235 -81679286 + L1MD2 LINE L1 3906 4555 -1985 2322 88 0 10 chr15 19701235 19701532 -81678989 + AluY SINE Alu 1 294 -17 2513 214 27 102 chr15 19701532 19701685 -81678836 + L1MD2 LINE L1 4555 4718 -1822 206 61 0 30 chr15 19701725 19701740 -81678781 + (TATAA)n Simple_repeat Simple_repeat 1 15 -17 2248 103 0 7 chr15 19701740 19702031 -81678490 + AluSq SINE Alu 1 289 -24 206 61 0 30 chr15 19702031 19702048 -81678473 + (TATAA)n Simple_repeat Simple_repeat 15 32 0 1242 246 34 34 chr15 19702062 19702480 -81678041 + L1MD2 LINE L1 4766 5183 -1357 2488 242 107 62 chr15 19702538 19702703 -81677818 + L1MD2 LINE L1 5196 5352 -1401 194 0 0 37 chr15 19702703 19702730 -81677791 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2488 242 107 62 chr15 19702730 19703126 -81677395 + L1MD2 LINE L1 5352 5729 -1024 2112 121 7 3 chr15 19703126 19703423 -81677098 + AluSx SINE Alu 3 300 -12 2488 242 107 62 chr15 19703423 19703633 -81676888 + L1MD2 LINE L1 5729 5928 -825 2722 45 0 0 chr15 19703633 19703944 -81676577 + AluY SINE Alu 1 311 0 2488 242 107 62 chr15 19703944 19704665 -81675856 + L1MD2 LINE L1 5928 6741 -12 463 279 73 62 chr15 19706398 19706739 -81673782 - L1ME LINE L1 -420 5701 5357 2270 95 3 19 chr15 19706889 19707205 -81673316 - AluY SINE Alu 0 311 1 420 300 56 4 chr15 19709261 19709494 -81671027 + L1 LINE L1 3535 3779 -2367 208 302 0 44 chr15 19711883 19712065 -81668456 + (CGGGG)n Simple_repeat Simple_repeat 3 176 0 246 269 13 13 chr15 19713705 19713783 -81666738 - L2 LINE L2 -564 2750 2673 429 183 43 43 chr15 19715017 19715110 -81665411 - Tigger7 DNA MER2_type 0 2487 2395 1817 162 20 0 chr15 19715115 19715409 -81665112 - Tigger7 DNA MER2_type -219 514 215 1440 192 48 0 chr15 19715409 19715659 -81664862 + Tigger7 DNA MER2_type 1 262 -2225 557 160 0 40 chr15 19715662 19715762 -81664759 + Tigger7 DNA MER2_type 2492 2587 0 197 259 0 52 chr15 19717256 19717314 -81663207 - L2 LINE L2 -2 3311 3257 1577 182 0 57 chr15 19717930 19718248 -81662273 - AluJo SINE Alu -12 300 1 1668 256 63 47 chr15 19718284 19718531 -81661990 - L1ME2 LINE L1 -2 6162 5921 195 42 0 0 chr15 19718531 19718555 -81661966 + (GGGA)n Simple_repeat Simple_repeat 2 25 0 1668 256 63 47 chr15 19718555 19719031 -81661490 - L1ME2 LINE L1 -243 5921 5427 340 213 56 46 chr15 19719016 19719124 -81661397 - L1ME LINE L1 -598 5566 5458 * 1846 168 80 105 chr15 19719195 19719730 -81660791 - L1MC2 LINE L1 -9 6335 5814 3337 185 6 12 chr15 19719735 19720388 -81660133 - L1MC1 LINE L1 -3 6330 5682 2262 91 3 10 chr15 19720390 19720688 -81659833 - AluY SINE Alu -14 297 2 1622 273 75 24 chr15 19720690 19720861 -81659660 - L1MCc LINE L1 -3014 3927 3766 2323 79 4 0 chr15 19720861 19721182 -81659339 - AluSc SINE Alu 0 322 1 1622 273 75 24 chr15 19721182 19721834 -81658687 - L1MCc LINE L1 -3175 3766 3061 669 206 46 88 chr15 19721855 19722115 -81658406 - MLT2B1 LTR ERVL -41 491 282 363 188 62 21 chr15 19722145 19722241 -81658280 - MLT2D LTR ERVL -314 100 1 635 264 108 16 chr15 19722294 19722673 -81657848 - L1MCc LINE L1 -4134 2988 2575 341 86 17 0 chr15 19722703 19722761 -81657760 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 25 0 0 0 chr15 19722946 19722971 -81657550 + AT_rich Low_complexity Low_complexity 1 25 0 513 249 35 46 chr15 19723053 19723250 -81657271 - L2 LINE L2 -6 3307 3113 225 108 0 0 chr15 19723941 19723978 -81656543 + (CA)n Simple_repeat Simple_repeat 2 38 0 672 278 28 0 chr15 19723986 19724198 -81656323 - L1MCc LINE L1 -4604 2518 2301 5006 169 10 54 chr15 19724200 19724704 -81655817 + L1MA8 LINE L1 4784 5309 -982 2358 105 0 3 chr15 19724704 19725010 -81655511 + AluSx SINE Alu 6 310 -2 5006 169 10 54 chr15 19725010 19726067 -81654454 + L1MA8 LINE L1 5309 6287 -4 713 315 47 25 chr15 19726136 19726953 -81653568 - L1MCc LINE L1 -4888 1535 1180 186 43 0 0 chr15 19727208 19727231 -81653290 + (TTG)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr15 19728816 19728838 -81651683 + AT_rich Low_complexity Low_complexity 1 22 0 537 311 128 19 chr15 19729508 19729923 -81650598 + L2 LINE L2 2839 3298 -15 396 305 24 12 chr15 19730065 19730229 -81650292 + MIR SINE MIR 24 189 -73 23 0 0 0 chr15 19730449 19730472 -81650049 + AT_rich Low_complexity Low_complexity 1 23 0 2163 90 11 0 chr15 19730480 19730757 -81649764 + AluSg SINE Alu 1 280 -30 2547 59 3 0 chr15 19730757 19731062 -81649459 + AluY SINE Alu 1 306 -5 2600 222 64 67 chr15 19731099 19731943 -81648578 - L1MD2 LINE L1 -4 6355 5510 2540 52 3 3 chr15 19731943 19732253 -81648268 - AluY SINE Alu -1 310 1 2600 222 64 67 chr15 19732253 19732573 -81647948 - L1MD2 LINE L1 -849 5510 5191 2432 73 0 6 chr15 19732573 19732886 -81647635 + AluY SINE Alu 1 311 0 2600 222 64 67 chr15 19732886 19733471 -81647050 - L1MD2 LINE L1 -1168 5191 4622 219 36 0 0 chr15 19733631 19733659 -81646862 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1374 196 4 0 chr15 19733661 19733901 -81646620 - AluJb SINE Alu -30 282 42 2114 128 0 0 chr15 19734793 19735082 -81645439 + AluSx SINE Alu 1 289 -23 206 57 57 0 chr15 19736449 19736484 -81644037 + A-rich Low_complexity Low_complexity 3 39 0 1019 128 4 149 chr15 19736543 19736778 -81643743 + MLT1B LTR MaLR 190 390 0 271 290 0 0 chr15 19737374 19737436 -81643085 + MER81 DNA DNA 32 93 -21 2275 244 66 46 chr15 19737439 19738288 -81642233 - L1MD2 LINE L1 -1538 4608 3743 294 70 0 23 chr15 19739018 19739061 -81641460 + U2 snRNA snRNA 1 42 -146 376 341 60 27 chr15 19739215 19739514 -81641007 + L2 LINE L2 2301 2609 -705 254 321 43 36 chr15 19739625 19739765 -81640756 + L2 LINE L2 1959 2099 -1215 2064 131 24 3 chr15 19740013 19740303 -81640218 + AluJo SINE Alu 1 296 -16 231 178 78 67 chr15 19741044 19741134 -81639387 - MLT1L LTR MaLR -5 610 520 243 274 39 10 chr15 19741494 19741596 -81638925 + L1MC4 LINE L1 6600 6704 -1338 * 252 255 38 9 chr15 19741509 19741615 -81638906 - L1MC4 LINE L1 -1339 6703 6595 460 236 27 0 chr15 19741615 19741835 -81638686 + (TA)n Simple_repeat Simple_repeat 1 225 0 232 245 0 82 chr15 19741870 19741968 -81638553 - L1MC4 LINE L1 -1339 6703 6614 183 235 12 24 chr15 19741969 19742054 -81638467 + (TA)n Simple_repeat Simple_repeat 1 84 0 226 277 9 71 chr15 19742055 19742167 -81638354 + L1MC4 LINE L1 6614 6718 -1324 811 186 0 0 chr15 19742328 19742452 -81638069 - FLAM_C SINE Alu -18 125 2 2427 80 0 0 chr15 19742549 19742848 -81637673 + AluY SINE Alu 1 299 -12 279 318 45 18 chr15 19742859 19742969 -81637552 + L2 LINE L2 3160 3272 0 420 324 82 72 chr15 19743491 19743797 -81636724 + L2 LINE L2 2964 3272 0 2423 64 3 3 chr15 19744040 19744336 -81636185 - L1PA6 LINE L1 -1 6153 5858 2487 54 3 0 chr15 19744336 19744631 -81635890 + AluY SINE Alu 1 296 -15 3085 38 6 0 chr15 19744631 19744996 -81635525 - L1PA5 LINE L1 -1898 4248 3882 9924 36 0 0 chr15 19744996 19746894 -81633627 + L1PA5 LINE L1 4249 6149 -5 240 35 0 0 chr15 19746894 19746923 -81633598 + (TA)n Simple_repeat Simple_repeat 1 29 0 231 71 0 0 chr15 19746924 19746952 -81633569 - L1PA6 LINE L1 -258 5873 5846 * 756 16 0 157 chr15 19746949 19747015 -81633506 + L1P2 LINE L1 5391 5431 -723 2538 51 3 6 chr15 19747015 19747327 -81633194 + AluY SINE Alu 1 311 0 756 16 0 157 chr15 19747327 19747381 -81633140 + L1P2 LINE L1 5431 5492 -662 2115 125 0 0 chr15 19747554 19747851 -81632670 - AluSx SINE Alu -15 297 1 180 0 0 0 chr15 19747866 19747886 -81632635 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2329 53 3 7 chr15 19747888 19748172 -81632349 - AluY SINE Alu -24 287 5 189 419 31 16 chr15 19748256 19748385 -81632136 - L2 LINE L2 -1 3271 3141 26 0 0 0 chr15 19748650 19748676 -81631845 + AT_rich Low_complexity Low_complexity 1 26 0 253 354 97 0 chr15 19750221 19750365 -81630156 + MIR SINE MIR 31 188 -74 26 30 0 0 chr15 19750429 19750462 -81630059 + AT_rich Low_complexity Low_complexity 1 33 0 424 318 53 11 chr15 19750512 19750701 -81629820 + MIR SINE MIR 28 224 -38 21 57 0 0 chr15 19750706 19750741 -81629780 + AT_rich Low_complexity Low_complexity 1 35 0 239 311 36 44 chr15 19751262 19751510 -81629011 + L1 LINE L1 3532 3777 -2369 22 35 0 0 chr15 19752801 19752830 -81627691 + GC_rich Low_complexity Low_complexity 1 29 0 182 320 103 49 chr15 19752866 19753069 -81627452 - L2 LINE L2 -850 2464 2251 269 186 14 0 chr15 19754131 19754201 -81626320 + CT-rich Low_complexity Low_complexity 3 73 0 2120 114 7 7 chr15 19754409 19754716 -81625805 + AluSx SINE Alu 1 307 -5 195 298 41 50 chr15 19756453 19756574 -81623947 - L2 LINE L2 -609 2705 2586 225 238 202 24 chr15 19756577 19756661 -81623860 - L2 LINE L2 -1 3271 3173 955 273 73 23 chr15 19757502 19757869 -81622652 - L1M4c LINE L1 -2358 4024 3630 2037 147 144 5 chr15 19757869 19758244 -81622277 - MSTA LTR MaLR 0 428 2 955 273 73 23 chr15 19758244 19758315 -81622206 - L1M4c LINE L1 -2752 3630 3564 466 341 61 29 chr15 19758485 19758732 -81621789 + L2 LINE L2 2068 2336 -978 1514 199 14 7 chr15 19758732 19759052 -81621469 - AluJb SINE Alu 0 322 1 466 341 61 29 chr15 19759052 19759211 -81621310 + L2 LINE L2 2336 2488 -826 897 244 67 8 chr15 19759396 19759634 -81620887 - MLT1C LTR MaLR -2 465 214 27 62 0 0 chr15 19760036 19760084 -81620437 + AT_rich Low_complexity Low_complexity 1 48 0 1289 288 118 45 chr15 19760196 19760881 -81619640 - MER21B LTR ERV1 -128 735 1 3516 120 14 10 chr15 19761004 19761512 -81619009 - MER9 LTR ERVK -1 510 1 31286 83 6 5 chr15 19761515 19765847 -81614674 - HERVK9 LTR ERVK -2 8033 1669 2285 85 0 0 chr15 19765847 19766150 -81614371 + AluY SINE Alu 1 303 0 31286 83 6 5 chr15 19766150 19766196 -81614325 - HERVK9 LTR ERVK -6366 1669 1625 4469 101 18 21 chr15 19766196 19766860 -81613661 - HERVK9 LTR ERVK -5254 662 1 3467 99 47 12 chr15 19766860 19767354 -81613167 - MER9 LTR ERVK 0 511 1 2846 253 36 17 chr15 19767568 19768601 -81611920 - L1ME1 LINE L1 -5 6161 5006 518 273 72 36 chr15 19769052 19769411 -81611110 - L1M4c LINE L1 -2815 3567 3196 1188 244 107 46 chr15 19769412 19770041 -81610480 - L1M4c LINE L1 -3229 3153 2477 2112 139 0 0 chr15 19770041 19770336 -81610185 + AluSx SINE Alu 1 295 -17 1188 244 107 46 chr15 19770336 19770395 -81610126 - L1M4c LINE L1 -3905 2477 2423 2323 234 28 14 chr15 19770406 19770975 -81609546 - L1MD3 LINE L1 -8 7987 7411 414 294 8 0 chr15 19770979 19771098 -81609423 - MLT1F1 LTR MaLR -447 120 1 1322 240 11 35 chr15 19771099 19771470 -81609051 - L1MD3 LINE L1 -718 7277 6916 249 57 0 0 chr15 19771470 19771505 -81609016 + (TG)n Simple_repeat Simple_repeat 1 35 0 275 167 0 0 chr15 19771621 19771669 -81608852 - L1M4c LINE L1 -4740 1823 1776 247 137 39 0 chr15 19771670 19771721 -81608800 - L1M4c LINE L1 -4701 1681 1629 380 286 25 26 chr15 19771746 19771757 -81608764 - L1M4c LINE L1 -4816 1566 1556 2236 114 0 19 chr15 19771757 19772074 -81608447 - AluY SINE Alu 0 311 1 2323 119 0 0 chr15 19772074 19772384 -81608137 - AluSq SINE Alu -3 310 1 380 286 25 26 chr15 19772384 19772571 -81607950 - L1M4c LINE L1 -4824 1558 1266 324 143 0 0 chr15 19772596 19772645 -81607876 - Alu SINE Alu -252 50 2 1910 247 84 13 chr15 19772645 19773276 -81607245 - L1MCc LINE L1 -4823 2118 1443 288 302 68 27 chr15 19773590 19773812 -81606709 - MER41B LTR ERV1 -230 405 175 300 303 10 0 chr15 19773912 19774011 -81606510 - PRIMA41-int LTR ERV1 -4 7752 7653 1966 149 0 10 chr15 19774945 19775246 -81605275 - AluSx SINE Alu -13 299 2 653 360 38 7 chr15 19775547 19775997 -81604524 - PRIMA41-int LTR ERV1 -1934 5822 5359 267 266 0 0 chr15 19776398 19776462 -81604059 - PRIMA41-int LTR ERV1 -1838 5253 5190 2009 138 0 3 chr15 19776756 19777052 -81603469 + AluSx SINE Alu 1 295 -17 2526 71 3 0 chr15 19777423 19777733 -81602788 - AluY SINE Alu 0 311 1 364 269 105 46 chr15 19777974 19778193 -81602328 - MER41B LTR ERV1 -220 415 184 822 190 0 0 chr15 19778228 19778370 -81602151 - L1PA15 LINE L1 0 6165 6024 1122 220 36 11 chr15 19778449 19778749 -81601772 - L1MCc LINE L1 -5711 711 58 500 216 36 91 chr15 19778803 19779028 -81601493 - L1MEc LINE L1 -4203 2281 2006 260 220 43 21 chr15 19779040 19779181 -81601340 + (TA)n Simple_repeat Simple_repeat 1 144 0 370 244 45 61 chr15 19779236 19779482 -81601039 - L1MEc LINE L1 -4361 2065 1824 31719 32 15 1 chr15 19779482 19785509 -81595012 + L1PA3 LINE L1 2 6155 0 21 0 0 0 chr15 19785509 19785530 -81594991 + AT_rich Low_complexity Low_complexity 1 21 0 540 246 44 60 chr15 19785538 19785786 -81594735 - L1MEc LINE L1 -4668 1939 1696 247 182 197 0 chr15 19786058 19786124 -81594397 + LOR1b LTR ERV1 1 79 -382 802 122 0 0 chr15 19786125 19786248 -81594273 - AluSg/x SINE Alu -1 308 186 3475 173 58 6 chr15 19786248 19786927 -81593594 - L1MA8 LINE L1 -342 5949 5194 1436 190 117 56 chr15 19786927 19787019 -81593502 + MER47B DNA MER2_type 1 86 -2237 2546 57 0 0 chr15 19787019 19787316 -81593205 - AluY SINE Alu -14 297 1 1436 190 117 56 chr15 19787316 19787617 -81592904 + MER47B DNA MER2_type 86 418 0 3475 173 58 6 chr15 19787617 19788027 -81592494 - L1MA8 LINE L1 -1097 5194 4807 1022 98 0 0 chr15 19788027 19788159 -81592362 - AluY SINE Alu -179 132 1 1354 177 24 0 chr15 19788166 19788414 -81592107 - L1MA8 LINE L1 -1330 4816 4563 1695 195 25 6 chr15 19789681 19790040 -81590481 - L1MA8 LINE L1 -1613 4533 4168 613 167 0 9 chr15 19790041 19790149 -81590372 + AluSq/x SINE Alu 2 108 -205 1686 126 0 4 chr15 19790149 19790388 -81590133 + AluSx SINE Alu 62 299 -13 2341 75 16 0 chr15 19790717 19791023 -81589498 - AluY SINE Alu 0 311 1 449 248 9 12 chr15 19791177 19791322 -81589199 - L1MEc LINE L1 -3969 2611 2430 257 189 0 19 chr15 19791499 19791552 -81588969 + MLT1A1 LTR MaLR 82 133 -232 252 207 92 23 chr15 19791554 19791641 -81588880 + L1MC4 LINE L1 7948 8040 -2 2414 154 9 16 chr15 19792994 19793430 -81587091 + L1MB8 LINE L1 4548 4980 -1166 274 226 7 55 chr15 19793541 19793687 -81586834 + (CACCC)n Simple_repeat Simple_repeat 4 142 0 1088 215 45 78 chr15 19793822 19793881 -81586640 + L1MB8 LINE L1 5767 5826 -352 1424 200 6 72 chr15 19793881 19794201 -81586320 + AluJb SINE Alu 1 299 -13 1088 215 45 78 chr15 19794201 19794243 -81586278 + L1MB8 LINE L1 5826 5868 -310 2272 93 3 0 chr15 19794243 19794533 -81585988 - AluSg SINE Alu -19 291 1 1088 215 45 78 chr15 19794533 19794830 -81585691 + L1MB8 LINE L1 5868 6153 -25 316 89 18 0 chr15 19794944 19795000 -81585521 + L1MB8 LINE L1 6122 6178 0 858 217 84 113 chr15 19796340 19796755 -81583766 + L1MD3 LINE L1 6486 6888 -1107 229 218 0 0 chr15 19796759 19796814 -81583707 + L1MD3 LINE L1 7009 7063 -932 * 1899 188 32 34 chr15 19796805 19798006 -81582515 + L1MB1 LINE L1 4785 6129 -39 1278 130 10 0 chr15 19798008 19798200 -81582321 + AluSq SINE Alu 1 194 -119 652 217 0 0 chr15 19798457 19798586 -81581935 + AluJb SINE Alu 184 312 0 1161 242 16 3 chr15 19798690 19799000 -81581521 + L1M4 LINE L1 4086 4399 -1747 24 67 0 0 chr15 19799038 19799083 -81581438 + AT_rich Low_complexity Low_complexity 1 45 0 573 28 0 0 chr15 19799083 19799154 -81581367 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 1480 315 15 28 chr15 19799154 19799700 -81580821 + L1MA2 LINE L1 53 591 -6439 363 183 0 61 chr15 19799826 19799908 -81580613 + L1MA2 LINE L1 1811 1887 -5143 644 175 73 58 chr15 19799914 19799942 -81580579 + L1MA2 LINE L1 3181 3207 -3899 2572 47 3 0 chr15 19799942 19800241 -81580280 + AluY SINE Alu 1 300 -11 644 175 73 58 chr15 19800241 19800418 -81580103 + L1MA2 LINE L1 3207 3389 -3717 3623 182 32 18 chr15 19800422 19800696 -81579825 + L1MA2 LINE L1 5479 5747 -1513 2274 112 3 3 chr15 19800696 19801001 -81579520 + AluSp SINE Alu 1 305 -8 3623 182 32 18 chr15 19801001 19801836 -81578685 + L1MA2 LINE L1 5747 6606 -654 2402 165 55 32 chr15 19801836 19802112 -81578409 + Tigger1 DNA MER2_type 1 294 -2124 1776 178 0 13 chr15 19802112 19802421 -81578100 + AluSx SINE Alu 1 305 -7 2402 165 55 32 chr15 19802421 19802616 -81577905 + Tigger1 DNA MER2_type 294 483 -1935 1970 183 52 54 chr15 19802623 19803126 -81577395 - L1 LINE L1 -774 5372 4871 1687 129 0 0 chr15 19803126 19803374 -81577147 + L1MA2 LINE L1 6609 6856 -409 5282 77 29 1 chr15 19803378 19804198 -81576323 + MER11D LTR ERVK 6 897 0 1668 115 33 4 chr15 19804198 19804468 -81576053 + L1MA2 LINE L1 6851 7128 -136 1776 127 71 4 chr15 19804468 19804736 -81575785 - AluSc SINE Alu -2 307 22 1822 226 59 22 chr15 19804736 19805281 -81575240 + L1MC3 LINE L1 4419 4983 -1163 1888 242 78 30 chr15 19805292 19805920 -81574601 + L1MC3 LINE L1 5905 6562 -1223 1073 161 14 14 chr15 19805915 19806126 -81574395 - L1 LINE L1 -1206 4940 4730 * 644 182 91 28 chr15 19806159 19806302 -81574219 + L1MD3 LINE L1 7386 7687 -271 546 278 149 25 chr15 19806321 19806774 -81573747 + MLT1E LTR MaLR 30 593 0 1095 194 43 8 chr15 19806780 19807038 -81573483 + L1MD3 LINE L1 7728 7994 -1 225 358 0 0 chr15 19809706 19809773 -81570748 + HsTC2 DNA Tc2 88 154 -1744 * 981 270 74 25 chr15 19809770 19810215 -81570306 + HsTC2 DNA Tc2 1233 1875 -23 281 322 17 9 chr15 19810256 19810371 -81570150 - MIR SINE MIR -7 255 140 234 309 61 40 chr15 19810516 19810843 -81569678 - L1M4 LINE L1 -1050 5096 4763 212 329 0 14 chr15 19811108 19811248 -81569273 + (CA)n Simple_repeat Simple_repeat 1 138 0 423 106 0 0 chr15 19811442 19811508 -81569013 + (TCC)n Simple_repeat Simple_repeat 1 66 0 624 194 0 0 chr15 19811508 19811611 -81568910 - AluJb SINE Alu -18 294 192 1633 183 3 14 chr15 19811834 19812124 -81568397 - AluJb SINE Alu -25 287 1 414 244 70 13 chr15 19813621 19813777 -81566744 - MER104 DNA Tc2 -1 179 15 192 27 81 0 chr15 19814426 19814463 -81566058 + A-rich Low_complexity Low_complexity 2 41 0 1193 203 78 16 chr15 19816140 19816200 -81564321 - L1MA8 LINE L1 0 6291 6236 2196 192 46 2 chr15 19816200 19816659 -81563862 - L1PA16 LINE L1 -3 6163 5685 1193 203 78 16 chr15 19816659 19816918 -81563603 - L1MA8 LINE L1 -55 6236 5952 2096 133 6 14 chr15 19817400 19817745 -81562776 + L1PB1 LINE L1 5804 6145 -6 2330 94 3 0 chr15 19817757 19818045 -81562476 - AluSp SINE Alu -24 289 1 2953 29 0 0 chr15 19818045 19818387 -81562134 + L1PA3 LINE L1 5814 6155 0 288 205 167 0 chr15 19818760 19818838 -81561683 + MLT1J2 LTR MaLR 72 162 -288 325 276 48 9 chr15 19819452 19819557 -81560964 - MER5A DNA MER1_type -22 167 59 4188 117 93 127 chr15 19819657 19821082 -81559439 - pTR5 LTR ERV1 0 2438 743 2334 156 36 7 chr15 19821165 19821581 -81558940 + MSTA LTR MaLR 1 428 0 4016 170 28 66 chr15 19822505 19823729 -81556792 - L1MA7 LINE L1 0 6291 5022 2289 96 7 0 chr15 19823729 19824031 -81556490 - AluSg SINE Alu -6 304 1 4016 170 28 66 chr15 19824031 19824171 -81556350 - L1MA7 LINE L1 -1269 5022 4878 1865 137 32 3 chr15 19824171 19824455 -81556066 - AluSx SINE Alu -20 292 1 4016 170 28 66 chr15 19824455 19824914 -81555607 - L1MA7 LINE L1 -1413 4878 4548 308 221 77 19 chr15 19826264 19826368 -81554153 - L1MC4 LINE L1 -2 8040 7931 728 274 109 77 chr15 19826468 19827092 -81553429 - L1MC4 LINE L1 -275 7767 7124 284 143 18 0 chr15 19827129 19827185 -81553336 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 1001 227 78 34 chr15 19827186 19827543 -81552978 - L1ME1 LINE L1 -4 6162 5790 2679 176 54 12 chr15 19827548 19828123 -81552398 - L1MD3 LINE L1 0 7995 7397 610 242 110 11 chr15 19828138 19828320 -81552201 + MLT1G LTR MaLR 319 518 -72 1229 189 22 76 chr15 19828329 19828684 -81551837 - L1MD3 LINE L1 -877 7118 6783 294 50 0 0 chr15 19828684 19828724 -81551797 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 815 120 0 0 chr15 19828724 19828832 -81551689 - AluSp/q SINE Alu -32 281 174 503 275 8 0 chr15 19828882 19829002 -81551519 - L1MC4a LINE L1 -1081 6727 6607 524 283 68 25 chr15 19830593 19830830 -81549691 + MIR SINE MIR 8 254 -8 496 221 130 10 chr15 19831561 19831769 -81548752 + MER114 LTR ERV 142 374 -274 21 0 0 0 chr15 19831780 19831801 -81548720 + AT_rich Low_complexity Low_complexity 1 21 0 1260 202 98 12 chr15 19832136 19832463 -81548058 - L1ME2 LINE L1 -21 6423 6069 875 253 114 24 chr15 19832804 19833436 -81547085 - L1ME2 LINE L1 -1077 5349 4661 460 338 39 42 chr15 19833759 19834093 -81546428 - L1ME2 LINE L1 -4213 2394 2062 996 247 117 6 chr15 19834175 19834499 -81546022 - MLT1A1 LTR MaLR 0 365 6 1620 199 50 8 chr15 19834504 19834865 -81545656 - MLT1A1-int LTR MaLR 0 1735 1360 286 243 20 25 chr15 19834861 19834994 -81545527 - L1ME2 LINE L1 -4891 1525 1235 * 21 0 0 0 chr15 19835232 19835253 -81545268 + AT_rich Low_complexity Low_complexity 1 21 0 325 296 93 57 chr15 19836617 19836897 -81543624 + MLT1I LTR MaLR 102 391 -18 301 228 22 22 chr15 19838723 19838815 -81541706 + L1MEd LINE L1 1137 1228 -4891 * 982 162 50 10 chr15 19838811 19839009 -81541512 + MLT1I-int LTR MaLR 1360 1565 -170 247 293 151 42 chr15 19839114 19839353 -81541168 + MLT1I LTR MaLR 126 390 -19 2164 117 0 0 chr15 19839895 19840186 -81540335 - AluSx SINE Alu -21 291 1 2797 175 44 39 chr15 19840569 19840888 -81539633 + L1MC3 LINE L1 7076 7392 -393 1824 141 7 14 chr15 19840888 19841192 -81539329 + AluSx SINE Alu 3 304 0 2797 175 44 39 chr15 19841192 19841546 -81538975 + L1MC3 LINE L1 7392 7754 -31 1474 273 115 16 chr15 19844111 19844913 -81535608 - L1ME2 LINE L1 -3 6161 5281 320 286 35 35 chr15 19844941 19845140 -81535381 - L1ME2 LINE L1 -981 5165 4967 253 336 19 0 chr15 19845286 19845393 -81535128 + L1MCb LINE L1 325 433 -5612 1617 233 72 39 chr15 19845533 19846268 -81534253 + L1MCb LINE L1 539 1302 -4873 645 159 0 0 chr15 19846268 19846375 -81534146 + U6 snRNA snRNA 1 107 0 1617 233 72 39 chr15 19846375 19846401 -81534120 + L1MCb LINE L1 1302 1326 -4849 601 263 97 0 chr15 19846401 19846629 -81533892 + L1MCb LINE L1 2639 2888 -3676 10127 203 19 19 chr15 19846770 19848665 -81531856 + L1PA16 LINE L1 2900 4793 -1791 2487 66 0 0 chr15 19848665 19848967 -81531554 + AluY SINE Alu 1 302 -9 10127 203 19 19 chr15 19848967 19849231 -81531290 + L1PA16 LINE L1 4793 5055 -1529 1903 161 30 25 chr15 19849231 19849592 -81530929 - THE1B LTR MaLR -1 363 1 10127 203 19 19 chr15 19849592 19851118 -81529403 + L1PA16 LINE L1 5055 6581 -3 270 203 14 72 chr15 19851119 19851257 -81529264 + L1MC3 LINE L1 1152 1281 -5145 309 135 0 0 chr15 19851415 19851467 -81529054 + (CA)n Simple_repeat Simple_repeat 2 53 0 288 210 10 40 chr15 19851470 19851570 -81528951 + L1MC3 LINE L1 1438 1534 -4892 2729 255 76 50 chr15 19851636 19852446 -81528075 + L1MC3 LINE L1 3559 4426 -2000 4600 15 0 2 chr15 19852446 19852970 -81527551 - L1PA3 LINE L1 -4 6151 5629 2729 255 76 50 chr15 19852970 19853653 -81526868 + L1MC3 LINE L1 4426 5090 -1336 317 175 4 256 chr15 19854029 19854167 -81526354 + L1MC3 LINE L1 5126 5163 -1263 2097 131 3 0 chr15 19854167 19854458 -81526063 + AluSq SINE Alu 1 292 -21 317 175 4 256 chr15 19854458 19854593 -81525928 + L1MC3 LINE L1 5163 5330 -1096 1774 186 68 28 chr15 19854593 19855096 -81525425 + MLT2A2 LTR ERVL 2 554 0 401 257 62 24 chr15 19855102 19855312 -81525209 + L1MC3 LINE L1 5331 5548 -878 686 239 19 6 chr15 19855315 19855474 -81525047 + AluJb SINE Alu 1 161 -151 422 221 0 0 chr15 19855527 19855613 -81524908 - Tigger7 DNA MER2_type -1 2486 2401 1010 131 47 0 chr15 19855635 19855826 -81524695 - Tigger7 DNA MER2_type -219 514 315 2066 187 30 117 chr15 19855827 19855935 -81524586 + LTR8 LTR ERV1 4 120 -571 2607 93 6 0 chr15 19855935 19856288 -81524233 - THE1A LTR MaLR 0 355 1 11277 96 7 13 chr15 19856288 19857877 -81522644 - THE1A-int LTR MaLR 0 1580 1 2579 88 6 30 chr15 19857877 19858005 -81522516 - THE1A LTR MaLR 0 355 225 2497 67 0 0 chr15 19858005 19858302 -81522219 - AluY SINE Alu -14 297 1 2579 88 6 30 chr15 19858302 19858537 -81521984 - THE1A LTR MaLR -130 225 1 2066 187 30 117 chr15 19858537 19859179 -81521342 + LTR8 LTR ERV1 117 691 0 1385 192 15 4 chr15 19859179 19859438 -81521083 - Tigger7 DNA MER2_type -2167 320 59 3184 189 52 14 chr15 19859475 19860243 -81520278 + L1MC3 LINE L1 5592 6388 -1677 22 0 0 0 chr15 19861460 19861482 -81519039 + AT_rich Low_complexity Low_complexity 1 22 0 189 387 91 5 chr15 19864192 19864378 -81516143 + L2 LINE L2 815 1016 -2298 3375 191 20 26 chr15 19864509 19865300 -81515221 - L1MB3 LINE L1 -1 6182 5397 367 287 17 6 chr15 19865451 19865625 -81514896 + L1M4 LINE L1 2742 2917 -3229 2955 280 40 68 chr15 19865645 19866761 -81513760 - MER21-int LTR ERV1 -781 3410 2341 3661 110 178 0 chr15 19866761 19867345 -81513176 - LTR12 LTR ERV1 0 688 1 2955 280 40 68 chr15 19867345 19867665 -81512856 - MER21-int LTR ERV1 -1850 2341 2014 2263 172 17 2 chr15 19868028 19868436 -81512085 + MSTB1 LTR MaLR 4 417 -15 2038 158 3 0 chr15 19868856 19869167 -81511354 + AluSx SINE Alu 1 312 0 222 191 0 0 chr15 19869189 19869236 -81511285 + (TG)n Simple_repeat Simple_repeat 2 48 0 2312 76 0 45 chr15 19869436 19869750 -81510771 + AluY SINE Alu 2 301 -10 594 311 10 19 chr15 19869821 19870027 -81510494 - MER21-int LTR ERV1 -2319 1872 1669 815 307 86 79 chr15 19870206 19871322 -81509199 + L1MA4 LINE L1 280 1403 -5446 229 300 0 0 chr15 19871386 19871446 -81509075 - L1M2b LINE L1 -6471 738 679 2214 194 10 12 chr15 19871532 19872048 -81508473 + L1MA4 LINE L1 1419 1933 -4916 260 98 0 39 chr15 19872062 19872113 -81508408 + Alu SINE Alu 253 301 0 1479 227 47 31 chr15 19872118 19872943 -81507578 + L1MA4 LINE L1 2598 3433 -3415 1233 326 14 15 chr15 19872943 19873535 -81506986 - MER21-int LTR ERV1 -3089 3669 3079 205 138 0 0 chr15 19873535 19873564 -81506957 + (GAA)n Simple_repeat Simple_repeat 2 30 0 1781 244 42 72 chr15 19873634 19874102 -81506419 - MER77 LTR ERV1 -8 597 150 2435 83 0 3 chr15 19874102 19874414 -81506107 + AluY SINE Alu 1 311 0 1781 244 42 72 chr15 19874414 19874560 -81505961 - MER77 LTR ERV1 -455 150 1 1761 280 50 30 chr15 19874571 19875511 -81505010 + L1MA4 LINE L1 4336 5294 -1554 395 285 5 24 chr15 19875519 19875726 -81504795 + L1M4c LINE L1 2000 2202 -4182 1720 116 0 0 chr15 19875731 19875956 -81504565 + AluSc SINE Alu 58 282 -27 22 35 0 0 chr15 19875956 19875985 -81504536 + AT_rich Low_complexity Low_complexity 1 29 0 3430 157 26 26 chr15 19875999 19876062 -81504459 + L1MA4 LINE L1 5694 5756 -1246 1954 129 0 0 chr15 19876062 19876325 -81504196 + AluSx SINE Alu 34 296 -16 3430 157 26 26 chr15 19876325 19876809 -81503712 + L1MA4 LINE L1 5756 6243 -759 2648 20 0 0 chr15 19876809 19877107 -81503414 + AluYa5 SINE Alu 1 298 -13 3430 157 26 26 chr15 19877107 19877508 -81503013 + L1MA4 LINE L1 6243 6643 -359 2018 107 13 0 chr15 19877523 19877822 -81502699 - L1P3 LINE L1 -426 5728 5426 385 41 0 0 chr15 19877822 19877870 -81502651 + L1PA7 LINE L1 6098 6146 -8 2385 86 0 10 chr15 19877894 19878207 -81502314 + AluY SINE Alu 1 310 -1 21 71 0 0 chr15 19878283 19878325 -81502196 + AT_rich Low_complexity Low_complexity 1 42 0 1034 181 48 4 chr15 19878325 19878552 -81501969 + L1MA4 LINE L1 6648 6884 -118 * 2623 80 0 0 chr15 19878545 19878909 -81501612 - L1M1 LINE L1 -525 5779 5416 572 81 23 0 chr15 19878909 19878982 -81501539 + L1MA1 LINE L1 6211 6298 -4 517 192 8 0 chr15 19878988 19879118 -81501403 + L1MA4A LINE L1 6870 7000 -5 4804 256 75 17 chr15 19879122 19880194 -81500327 + L1M4c LINE L1 2221 3229 -3153 2231 113 0 3 chr15 19880194 19880495 -81500026 + AluSq SINE Alu 1 300 -13 4804 256 75 17 chr15 19880495 19881798 -81498723 + L1M4c LINE L1 3229 4729 -1653 897 196 18 5 chr15 19881801 19882020 -81498501 - L1 LINE L1 -1557 4589 4368 2629 176 41 9 chr15 19882022 19882561 -81497960 + L1PA16 LINE L1 5609 6164 -2 997 226 75 81 chr15 19882567 19882633 -81497888 + L1M4c LINE L1 4726 4791 -1591 1578 239 23 8 chr15 19882633 19883023 -81497498 + MSTD LTR MaLR 1 396 0 997 226 75 81 chr15 19883023 19883511 -81497010 + L1M4c LINE L1 4791 5278 -1104 188 35 35 0 chr15 19883511 19883540 -81496981 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 997 226 75 81 chr15 19883540 19883687 -81496834 + L1M4c LINE L1 5278 5424 -958 342 177 0 0 chr15 19883687 19883749 -81496772 + AluJ/FLAM SINE Alu 1 62 -240 856 168 0 66 chr15 19883749 19883794 -81496727 + L1MB7 LINE L1 5986 6032 -152 2099 133 0 0 chr15 19883794 19884096 -81496425 - AluSx SINE Alu -10 302 1 856 168 0 66 chr15 19884096 19884246 -81496275 + L1MB7 LINE L1 6032 6168 -16 1208 227 52 44 chr15 19884254 19884741 -81495780 + L1MD1 LINE L1 4769 5260 -923 5884 21 0 0 chr15 19884741 19885417 -81495104 + L1PA3 LINE L1 5478 6153 -2 1208 227 52 44 chr15 19885417 19885600 -81494921 + L1MD1 LINE L1 5260 5440 -743 950 149 37 80 chr15 19885600 19885709 -81494812 + AluJo SINE Alu 1 100 -212 1740 48 5 0 chr15 19885709 19885918 -81494603 - AluY SINE Alu 0 311 102 950 149 37 80 chr15 19885918 19885996 -81494525 + AluJo SINE Alu 100 180 -132 311 154 0 0 chr15 19885997 19886049 -81494472 + AluJo SINE Alu 83 134 -168 573 203 152 0 chr15 19886085 19886223 -81494298 + AluJo SINE Alu 138 296 -6 2285 231 89 16 chr15 19886234 19886976 -81493545 + L1MD1 LINE L1 5428 6223 -19 390 195 8 24 chr15 19886984 19887107 -81493414 + L1MC/D LINE L1 4317 4437 -1709 22 0 0 0 chr15 19888075 19888097 -81492424 + AT_rich Low_complexity Low_complexity 1 22 0 302 311 79 66 chr15 19888633 19888951 -81491570 + L1ME4a LINE L1 5601 5922 -199 22 35 0 0 chr15 19889272 19889301 -81491220 + AT_rich Low_complexity Low_complexity 1 29 0 214 135 19 19 chr15 19889398 19889450 -81491071 + A-rich Low_complexity Low_complexity 3 54 0 293 274 43 26 chr15 19889587 19889704 -81490817 - MIR SINE MIR -94 168 50 384 168 38 23 chr15 19889807 19889938 -81490583 + CT-rich Low_complexity Low_complexity 2 134 0 189 74 0 0 chr15 19890406 19890433 -81490088 + (A)n Simple_repeat Simple_repeat 1 27 0 2119 113 3 7 chr15 19890933 19891243 -81489278 + AluSx SINE Alu 1 309 -3 347 252 148 82 chr15 19891388 19891658 -81488863 + L1ME LINE L1 5487 5774 -347 2528 60 0 0 chr15 19891748 19892047 -81488474 + AluY SINE Alu 1 299 -12 324 236 126 50 chr15 19892222 19892421 -81488100 + L1MC/D LINE L1 5257 5470 -2338 198 0 0 0 chr15 19892527 19892549 -81487972 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2201 129 0 3 chr15 19892611 19892921 -81487600 + AluSx SINE Alu 1 309 -3 2127 106 30 0 chr15 19893998 19894300 -81486221 + AluY SINE Alu 1 311 0 608 260 27 18 chr15 19894420 19894643 -81485878 + L1MEc LINE L1 444 668 -5728 409 298 95 34 chr15 19894654 19895097 -81485424 + L1MEc LINE L1 703 1172 -5224 347 301 36 30 chr15 19895155 19895517 -81485004 + L1MEc LINE L1 1309 1672 -4724 299 301 59 30 chr15 19895552 19895630 -81484891 + L1MB5 LINE L1 36 110 -6432 215 31 31 0 chr15 19895630 19895662 -81484859 + (TAA)n Simple_repeat Simple_repeat 1 33 0 299 301 59 30 chr15 19895662 19895786 -81484735 + L1MB5 LINE L1 110 244 -6298 2301 76 0 3 chr15 19895847 19896150 -81484371 + AluY SINE Alu 1 302 -9 964 223 137 42 chr15 19896294 19896348 -81484173 + L1M4 LINE L1 5220 5267 -907 1787 215 3 8 chr15 19896348 19896715 -81483806 - MLT1A1 LTR MaLR 0 365 1 964 223 137 42 chr15 19896715 19897078 -81483443 + L1M4 LINE L1 5267 5678 -496 1661 185 10 3 chr15 19897131 19897428 -81483093 + AluJb SINE Alu 12 310 -2 991 197 43 36 chr15 19897430 19897734 -81482787 + L1MB5 LINE L1 1931 2236 -4408 450 160 13 173 chr15 19897712 19897937 -81482584 - L1M4 LINE L1 -2240 3906 3718 * 2101 244 45 6 chr15 19897941 19898634 -81481887 + L1MB5 LINE L1 5728 6451 -221 723 181 30 0 chr15 19898643 19898809 -81481712 + L1MB5 LINE L1 6496 6666 -6 295 283 0 19 chr15 19898812 19898918 -81481603 + L1MEc LINE L1 1666 1769 -4627 744 260 0 40 chr15 19898918 19899141 -81481380 + MER20 DNA MER1_type 1 214 -5 391 218 23 74 chr15 19899202 19899418 -81481103 + L1MEc LINE L1 1837 2041 -4355 1337 227 42 62 chr15 19899612 19900211 -81480310 - L1M4 LINE L1 -2242 3904 3318 656 265 29 23 chr15 19900481 19900832 -81479689 - L1MCa LINE L1 -5711 334 2 715 230 22 0 chr15 19900834 19901012 -81479509 - L1MD3 LINE L1 -419 7576 7395 289 262 75 37 chr15 19901017 19901124 -81479397 - MLT1F1 LTR MaLR -456 111 1 562 298 21 0 chr15 19901130 19901321 -81479200 - L1MD3 LINE L1 -727 7268 7074 1992 112 10 10 chr15 19901381 19901676 -81478845 - AluY SINE Alu -16 295 1 1160 152 28 5 chr15 19901677 19901894 -81478627 - L1M4 LINE L1 -479 5705 5484 3257 182 95 33 chr15 19902091 19902286 -81478235 - L1MB3 LINE L1 -1 6182 6000 1835 155 7 17 chr15 19902286 19902583 -81477938 - AluJo SINE Alu -18 294 1 3257 182 95 33 chr15 19902583 19903201 -81477320 - L1MB3 LINE L1 -183 6000 5319 248 160 13 27 chr15 19903319 19903394 -81477127 + L1ME1 LINE L1 5293 5366 -2629 2142 71 0 0 chr15 19904134 19904401 -81476120 - AluY SINE Alu -43 268 2 2398 125 17 3 chr15 19904631 19904990 -81475531 - THE1B LTR MaLR 0 364 1 1294 243 133 41 chr15 19905106 19905646 -81474875 - MLT1G LTR MaLR 0 590 1 4571 158 23 33 chr15 19905740 19907187 -81473334 - L1MA8 LINE L1 -5 6286 4855 322 294 33 39 chr15 19907825 19907978 -81472543 + MLT1I LTR MaLR 250 401 -8 318 50 0 0 chr15 19908100 19908140 -81472381 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 * 972 49 0 0 chr15 19908139 19908261 -81472260 + (TTTC)n Simple_repeat Simple_repeat 4 125 0 1879 137 6 29 chr15 19908296 19908610 -81471911 - AluSg SINE Alu -3 307 1 2019 119 11 0 chr15 19908858 19909136 -81471385 + AluSx SINE Alu 1 281 -31 227 241 21 21 chr15 19909309 19909450 -81471071 + (TTGTG)n Simple_repeat Simple_repeat 1 141 0 2532 56 10 3 chr15 19909955 19910259 -81470262 + AluY SINE Alu 1 306 -5 919 278 39 30 chr15 19910284 19910690 -81469831 + L1ME1 LINE L1 5550 5959 -207 432 0 0 0 chr15 19911036 19911084 -81469437 + (CA)n Simple_repeat Simple_repeat 2 49 0 1715 133 98 11 chr15 19911245 19911530 -81468991 - AluSx SINE Alu -2 310 1 270 0 0 0 chr15 19911539 19911569 -81468952 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 2477 183 17 17 chr15 19911680 19912206 -81468315 + L1PA16 LINE L1 5625 6150 -16 1103 222 19 12 chr15 19912224 19912548 -81467973 - L1MB3 LINE L1 -798 5348 5023 * 3486 129 5 7 chr15 19912521 19913117 -81467404 - L1P LINE L1 -849 5297 4703 1308 209 13 7 chr15 19913115 19913416 -81467105 - L1MB3 LINE L1 -1898 4248 3946 * 3867 172 7 12 chr15 19913469 19914218 -81466303 + L1PB4 LINE L1 5411 6155 -1 1102 265 21 9 chr15 19914220 19914358 -81466163 - L1MB8 LINE L1 -55 6123 5988 1688 169 14 3 chr15 19914358 19914520 -81466001 - AluSx SINE Alu -19 293 125 378 57 0 0 chr15 19914520 19914573 -81465948 + (TG)n Simple_repeat Simple_repeat 2 54 0 1688 169 14 3 chr15 19914573 19914700 -81465821 - AluSx SINE Alu -187 125 1 1102 265 21 9 chr15 19914700 19914938 -81465583 - L1MB8 LINE L1 -190 5988 5746 593 300 113 32 chr15 19915365 19915860 -81464661 + L1ME1 LINE L1 37 419 -5278 2429 90 0 6 chr15 19915860 19916172 -81464349 + AluSp SINE Alu 1 310 -3 593 300 113 32 chr15 19916172 19916499 -81464022 + L1ME1 LINE L1 419 718 -4979 2450 266 59 13 chr15 19916529 19917368 -81463153 + L1ME1 LINE L1 4270 5187 -1048 642 121 0 17 chr15 19917368 19917484 -81463037 - L1PA13 LINE L1 0 6163 6050 2450 266 59 13 chr15 19917484 19918010 -81462511 + L1ME1 LINE L1 5187 5687 -548 1131 256 66 5 chr15 19918017 19918428 -81462093 + L1ME1 LINE L1 5785 6220 -15 21 0 0 0 chr15 19918491 19918512 -81462009 + AT_rich Low_complexity Low_complexity 1 21 0 4920 167 119 7 chr15 19918513 19920033 -81460488 - L1MA6 LINE L1 -4 6296 4539 210 23 70 23 chr15 19920033 19920076 -81460445 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 4920 167 119 7 chr15 19920076 19920308 -81460213 - L1MA6 LINE L1 -1761 4539 4334 698 117 55 6 chr15 19922389 19922552 -81457969 + GA-rich Low_complexity Low_complexity 2 172 0 970 270 62 75 chr15 19923370 19923996 -81456525 + L1ME LINE L1 78 695 -5375 22 0 0 0 chr15 19924298 19924320 -81456201 + AT_rich Low_complexity Low_complexity 1 22 0 226 98 39 0 chr15 19924541 19924592 -81455929 + (TG)n Simple_repeat Simple_repeat 2 54 0 453 224 28 7 chr15 19924707 19924850 -81455671 - L1ME3A LINE L1 -31 6139 5994 263 298 53 57 chr15 19925617 19925845 -81454676 - L2 LINE L2 -1285 2029 1803 374 313 144 23 chr15 19928155 19928411 -81452110 - L1MC4a LINE L1 -1962 5846 5560 522 303 117 36 chr15 19929001 19929643 -81450878 - L2 LINE L2 0 3313 2579 1461 183 14 21 chr15 19930253 19930538 -81449983 + AluJo SINE Alu 20 302 -10 383 229 92 0 chr15 19931509 19931618 -81448903 + MER5A DNA MER1_type 52 170 -19 460 346 79 31 chr15 19932189 19932608 -81447913 - L2 LINE L2 -678 2636 2198 807 34 61 0 chr15 19933051 19933199 -81447322 + (TA)n Simple_repeat Simple_repeat 2 158 0 251 187 243 37 chr15 19933243 19933350 -81447171 - MLT1H LTR MaLR -9 540 412 270 347 100 20 chr15 19933722 19933973 -81446548 - L2 LINE L2 -1185 2129 1859 317 244 49 0 chr15 19934880 19934962 -81445559 - L1MC4 LINE L1 -16 8026 7941 1778 251 153 6 chr15 19935083 19935868 -81444653 - L1MC4 LINE L1 -144 7898 6999 442 211 28 20 chr15 19935865 19936493 -81444028 - L1MC3 LINE L1 0 7785 6139 * 239 273 34 0 chr15 19936493 19936581 -81443940 - MLT1F1 LTR MaLR -442 125 35 260 169 15 15 chr15 19936605 19936670 -81443851 - L1MC4a LINE L1 -930 6878 6814 2368 50 3 0 chr15 19937818 19938101 -81442420 - AluY SINE Alu -24 287 4 264 232 12 0 chr15 19938275 19938357 -81442164 + (TA)n Simple_repeat Simple_repeat 1 83 0 2044 115 3 7 chr15 19938653 19938948 -81441573 + AluSq SINE Alu 1 294 -19 216 324 81 37 chr15 19941500 19941636 -81438885 - MIR SINE MIR -110 152 11 263 281 52 72 chr15 19941691 19941997 -81438524 - L1ME LINE L1 -279 5842 5543 198 351 0 0 chr15 19942774 19942848 -81437673 + MIR SINE MIR 188 261 -1 313 188 12 12 chr15 19943526 19943606 -81436915 - L1MD3 LINE L1 -86 7909 7830 587 72 0 0 chr15 19943606 19943689 -81436832 - Alu SINE Alu -6 303 221 5255 101 95 1 chr15 19943816 19944571 -81435950 + LTR12 LTR ERV1 1 826 0 2267 85 0 13 chr15 19944607 19944912 -81435609 - AluY SINE Alu -10 301 1 1840 283 107 26 chr15 19945082 19946142 -81434379 - L1MEc LINE L1 -5138 1258 114 2199 194 33 5 chr15 19946659 19947108 -81433413 + L1PA15 LINE L1 5704 6165 0 337 196 41 0 chr15 19949205 19949302 -81431219 - L1MCa LINE L1 -3024 3402 3302 881 196 41 21 chr15 19949304 19949621 -81430900 - L1MCa LINE L1 -3963 2463 2247 779 198 211 0 chr15 19949639 19949886 -81430635 + L1MCa LINE L1 1921 2219 -4207 624 260 51 23 chr15 19949886 19950199 -81430322 - MLT1E LTR MaLR -248 345 1 398 230 25 93 chr15 19950203 19950288 -81430233 - L1MD3 LINE L1 -282 7713 7643 2171 93 0 10 chr15 19950288 19950578 -81429943 - AluY SINE Alu -11 300 14 398 230 25 93 chr15 19950578 19950653 -81429868 - L1MD3 LINE L1 -352 7643 7564 3955 220 101 75 chr15 19950846 19951067 -81429454 - L1MC2 LINE L1 -3 7770 7556 1772 141 0 4 chr15 19951067 19951336 -81429185 - AluY SINE Alu -13 298 31 3955 220 101 75 chr15 19951336 19951566 -81428955 - L1MC2 LINE L1 -217 7556 7334 3719 113 143 2 chr15 19951566 19952169 -81428352 - LTR12 LTR ERV1 0 688 1 3955 220 101 75 chr15 19952169 19952346 -81428175 - L1MC2 LINE L1 -439 7334 7163 2171 110 3 3 chr15 19952346 19952647 -81427874 + AluY SINE Alu 1 301 -10 3955 220 101 75 chr15 19952647 19953671 -81426850 - L1MC2 LINE L1 -610 7163 6097 2358 85 10 0 chr15 19953671 19953966 -81426555 + AluSx SINE Alu 1 298 -14 3955 220 101 75 chr15 19953966 19954217 -81426304 - L1MC2 LINE L1 -1676 6097 5854 3621 215 52 32 chr15 19954217 19955592 -81424929 - L1MC2 LINE L1 -720 5454 4044 782 232 29 79 chr15 19955661 19955918 -81424603 - L1MC2 LINE L1 -2302 3844 3607 185 0 40 0 chr15 19955918 19955943 -81424578 + (TTG)n Simple_repeat Simple_repeat 2 27 0 782 232 29 79 chr15 19955943 19956025 -81424496 - L1MC2 LINE L1 -2539 3607 3522 352 241 46 8 chr15 19956027 19956214 -81424307 + MLT1E LTR MaLR 346 585 -8 830 202 51 20 chr15 19956217 19956470 -81424051 + L1MD3 LINE L1 7721 7981 -14 1490 190 64 39 chr15 19958433 19958823 -81421698 - MSTB1 LTR MaLR 0 432 33 2327 87 3 22 chr15 19958824 19959135 -81421386 - AluSp SINE Alu -8 305 1 2588 214 33 48 chr15 19959136 19959225 -81421296 + MER54A LTR ERVL 188 277 -624 2147 137 0 6 chr15 19959225 19959538 -81420983 - AluSx SINE Alu -1 311 1 2588 214 33 48 chr15 19959538 19960173 -81420348 + MER54A LTR ERVL 277 901 0 2198 96 3 3 chr15 19960284 19960577 -81419944 + AluSc SINE Alu 1 293 -16 627 290 69 35 chr15 19960788 19961240 -81419281 + HsTC2 DNA Tc2 1233 1875 -23 2086 105 54 0 chr15 19961554 19961848 -81418673 + AluSx SINE Alu 1 310 -2 482 262 142 21 chr15 19961900 19962067 -81418454 - L1M4 LINE L1 -1125 5021 4817 333 0 0 0 chr15 19962067 19962104 -81418417 + (TG)n Simple_repeat Simple_repeat 2 38 0 482 262 142 21 chr15 19962104 19962169 -81418352 - L1M4 LINE L1 -1329 4817 4761 884 191 7 0 chr15 19963966 19964113 -81416408 - FRAM SINE Alu -30 146 1 2145 100 0 33 chr15 19965004 19965305 -81415216 - AluSc SINE Alu -18 291 1 464 316 82 9 chr15 19965506 19965737 -81414784 - L1MEc LINE L1 -6083 313 66 2232 91 10 0 chr15 19965908 19966205 -81414316 + AluSx SINE Alu 1 300 -12 1385 104 79 5 chr15 19966553 19966755 -81413766 - AluSc SINE Alu -12 297 81 266 252 117 27 chr15 19966778 19966889 -81413632 - HsTC2 DNA Tc2 -546 1352 1232 221 197 26 40 chr15 19967988 19968064 -81412457 + L2 LINE L2 2427 2501 -813 2073 81 34 10 chr15 19968516 19968862 -81411659 - AluSq SINE Alu 0 353 1 528 89 125 54 chr15 19968961 19969073 -81411448 - AluSc SINE Alu 0 309 190 930 101 0 0 chr15 19969073 19969192 -81411329 - AluSq SINE Alu -159 154 36 962 291 42 13 chr15 19969523 19970066 -81410455 - L1M4 LINE L1 -3204 2942 2384 487 192 96 25 chr15 19970114 19970312 -81410209 + L1MCa LINE L1 2008 2219 -4207 353 295 180 25 chr15 19970314 19970514 -81410007 - MLT1E LTR MaLR -250 343 113 6666 19 0 0 chr15 19970536 19971335 -81409186 - L1PA3 LINE L1 0 6155 5357 319 255 9 38 chr15 19971336 19971442 -81409079 - MLT1E LTR MaLR -487 106 4 668 189 26 46 chr15 19971448 19971601 -81408920 - L1MD3 LINE L1 -281 7714 7565 1785 74 0 41 chr15 19971793 19972037 -81408484 - AluY SINE Alu -6 305 72 5028 232 91 34 chr15 19972085 19973953 -81406568 - L1MC2 LINE L1 0 7772 5835 269 188 12 75 chr15 19973934 19973977 -81406544 - L1MC2 LINE L1 -788 5454 5417 * 2037 202 34 7 chr15 19973977 19974392 -81406129 - MSTB LTR MaLR 0 426 1 269 188 12 75 chr15 19974392 19974428 -81406093 - L1MC2 LINE L1 -825 5417 5380 * 1084 241 69 11 chr15 19974423 19974800 -81405721 - L1MC2 LINE L1 -1008 5138 4740 467 118 0 0 chr15 19974800 19974868 -81405653 - AluJ/FLAM SINE Alu -217 95 28 542 179 9 127 chr15 19974872 19975101 -81405420 - L1MC2 LINE L1 -1446 4700 4499 888 177 0 0 chr15 19975130 19975271 -81405250 - FRAM SINE Alu -35 141 1 22 0 0 0 chr15 19975279 19975301 -81405220 + AT_rich Low_complexity Low_complexity 1 22 0 3980 137 46 29 chr15 19975358 19976119 -81404402 - LTR1 LTR ERV1 -11 774 1 736 235 20 44 chr15 19976122 19976373 -81404148 - L1MC2 LINE L1 -2383 3763 3519 392 220 53 53 chr15 19976423 19976573 -81403948 + MLT1E LTR MaLR 475 593 0 969 221 27 8 chr15 19976575 19976837 -81403684 + L1MD3 LINE L1 7724 7990 -5 2224 103 20 0 chr15 19977476 19977776 -81402745 + AluSg SINE Alu 1 306 -4 1635 129 20 106 chr15 19979545 19979680 -81400841 + AluYb8 SINE Alu 1 146 -172 2017 105 51 10 chr15 19979680 19979974 -81400547 + AluSc SINE Alu 1 306 -3 1635 129 20 106 chr15 19979974 19980179 -81400342 + AluYb8 SINE Alu 146 312 -6 4329 198 38 8 chr15 19980194 19981069 -81399452 + MER54A LTR ERVL 1 901 0 273 321 36 0 chr15 19981285 19981397 -81399124 + HsTC2 DNA Tc2 35 150 -1748 * 611 293 75 35 chr15 19981396 19981847 -81398674 + HsTC2 DNA Tc2 1231 1875 -23 317 358 137 4 chr15 19981884 19982110 -81398411 - MIR SINE MIR 0 262 7 277 262 158 32 chr15 19982221 19982442 -81398079 - L1M4 LINE L1 -1125 5021 4773 29 0 0 0 chr15 19984449 19984478 -81396043 + AT_rich Low_complexity Low_complexity 1 29 0 393 315 108 22 chr15 19985249 19985481 -81395040 - L1MEc LINE L1 -6083 313 62 282 305 99 21 chr15 19986429 19986570 -81393951 - MIR SINE MIR -1 261 110 2067 158 3 0 chr15 19986598 19986901 -81393620 - AluSx SINE Alu -8 304 1 223 200 143 76 chr15 19986908 19987013 -81393508 + MER5B DNA MER1_type 5 116 -62 1641 79 0 10 chr15 19987186 19987388 -81393133 - AluSq SINE Alu -113 200 1 200 287 196 28 chr15 19987944 19988087 -81392434 - MIR3 SINE MIR -35 173 7 348 133 33 0 chr15 19988278 19988338 -81392183 + MLT1C LTR MaLR 1 62 -405 2290 163 59 2 chr15 19988765 19989170 -81391351 + MSTA LTR MaLR 1 428 0 433 248 32 6 chr15 19989289 19989446 -81391075 + L2 LINE L2 2429 2589 -725 2094 93 4 0 chr15 19989549 19989827 -81390694 - AluSx SINE Alu -33 279 1 1137 239 64 18 chr15 19990588 19991098 -81389423 + L1MD3 LINE L1 4915 5454 -720 2197 104 10 0 chr15 19991100 19991389 -81389132 - AluSp SINE Alu -21 292 1 442 173 0 39 chr15 19991393 19991497 -81389024 + L1MD3 LINE L1 5854 5953 -2042 1991 213 82 16 chr15 19991619 19992086 -81388435 - L1MC3 LINE L1 -74 7711 7199 2800 7 0 0 chr15 19992086 19992388 -81388133 + AluYa5 SINE Alu 1 302 -9 1991 213 82 16 chr15 19992388 19992483 -81388038 - L1MC3 LINE L1 -586 7199 7112 530 182 0 9 chr15 19992496 19992606 -81387915 - L1PB3 LINE L1 -14 6140 6032 1565 156 154 96 chr15 19992606 19993150 -81387371 + LTR12 LTR ERV1 1 576 -138 348 215 25 0 chr15 19993150 19993229 -81387292 - L1PB3 LINE L1 -114 6040 5960 754 127 32 0 chr15 19993381 19993507 -81387014 - L1PB3 LINE L1 -207 5947 5818 1272 300 24 20 chr15 19993740 19994487 -81386034 - L1M4 LINE L1 -3022 3124 2375 305 200 56 11 chr15 19994500 19994590 -81385931 + L1MCa LINE L1 2101 2194 -4232 26 82 0 0 chr15 19994590 19994651 -81385870 + AT_rich Low_complexity Low_complexity 1 61 0 4148 127 40 19 chr15 19994652 19994709 -81385812 - L1PA14 LINE L1 -24 6137 6083 2064 153 80 30 chr15 19994709 19995148 -81385373 - LOR1b LTR ERV1 0 461 1 4148 127 40 19 chr15 19995148 19995841 -81384680 - L1PA14 LINE L1 -78 6083 5371 664 71 36 0 chr15 19995832 19995944 -81384577 - L1P4 LINE L1 -676 5489 5374 * 3742 144 16 21 chr15 19995939 19996797 -81383724 - L1P4 LINE L1 -673 5488 4638 2191 92 7 10 chr15 19996797 19997090 -81383431 + AluY SINE Alu 1 292 -19 3742 144 16 21 chr15 19997090 19997172 -81383349 - L1P4 LINE L1 -1523 4638 4557 379 287 0 29 chr15 19997378 19997514 -81383007 - MLT1E LTR MaLR -461 132 1 398 193 35 35 chr15 19997521 19997635 -81382886 - L1MD3 LINE L1 -285 7710 7597 1864 89 8 4 chr15 19997903 19998184 -81382337 + AluY SINE Alu 35 316 0 2064 133 3 0 chr15 19998284 19998569 -81381952 + AluSx SINE Alu 5 290 -22 580 229 3 129 chr15 19998569 19998787 -81381734 - L1MCa LINE L1 -3390 3036 2867 2280 104 0 3 chr15 19998787 19999085 -81381436 - AluSg SINE Alu -13 297 1 580 229 3 129 chr15 19999085 19999176 -81381345 - L1MCa LINE L1 -3559 2867 2766 2365 95 0 0 chr15 19999187 19999483 -81381038 - AluSx SINE Alu -16 296 1 261 261 95 46 chr15 19999676 19999917 -81380604 - L1 LINE L1 -1127 5019 4767 218 281 0 0 chr15 19999932 19999989 -81380532 - MIR SINE MIR -205 57 1 1690 200 0 7 chr15 20000054 20000354 -81380167 - AluJb SINE Alu -14 298 1 2183 118 3 3 chr15 20000604 20000908 -81379613 + AluSc SINE Alu 1 304 -5 957 228 38 29 chr15 20001008 20001129 -81379392 - L1MCa LINE L1 -3907 2700 2582 531 140 75 9 chr15 20001129 20001236 -81379285 - L1MA3 LINE L1 0 6305 6192 957 228 38 29 chr15 20001236 20001554 -81378967 - L1MCa LINE L1 -4025 2582 2223 1181 183 3 45 chr15 20001560 20001871 -81378650 + L1MCa LINE L1 1921 2218 -4208 2415 86 0 0 chr15 20002232 20002535 -81377986 + AluY SINE Alu 1 303 -8 259 206 55 14 chr15 20002536 20002609 -81377912 - L1MD3 LINE L1 -355 7640 7565 3967 239 61 72 chr15 20002854 20004752 -81375769 - L1MC3 LINE L1 -14 8051 6173 2365 112 3 0 chr15 20004752 20005064 -81375457 - AluSp SINE Alu 0 313 1 3967 239 61 72 chr15 20005064 20005104 -81375417 - L1MC3 LINE L1 -1892 6173 6134 1527 194 3 48 chr15 20005114 20005428 -81375093 + AluJo SINE Alu 1 300 -12 1792 237 65 20 chr15 20005440 20005561 -81374960 - L1MC3 LINE L1 -732 5722 5608 2292 90 3 0 chr15 20005561 20005849 -81374672 - AluSg SINE Alu -17 293 5 1792 237 65 20 chr15 20005849 20006508 -81374013 - L1MC3 LINE L1 -846 5608 4896 1979 260 35 41 chr15 20006521 20007382 -81373139 - L1MC3 LINE L1 -1772 4654 3799 348 246 18 2 chr15 20007383 20007563 -81372958 + MLT1F1 LTR MaLR 349 567 0 838 213 31 39 chr15 20007571 20007778 -81372743 + L1MD3 LINE L1 7731 7937 -58 2140 127 0 25 chr15 20007778 20008094 -81372427 - AluSx SINE Alu -4 308 1 838 213 31 39 chr15 20008094 20008140 -81372381 + L1MD3 LINE L1 7937 7982 -13 230 21 62 21 chr15 20008169 20008217 -81372304 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 2382 97 0 7 chr15 20008626 20008936 -81371585 - AluSq SINE Alu -5 308 1 1890 164 3 6 chr15 20009259 20009570 -81370951 + AluJo SINE Alu 1 310 -2 2269 154 28 42 chr15 20010844 20011225 -81369296 + MSTA LTR MaLR 1 377 -51 2376 86 7 0 chr15 20011225 20011527 -81368994 - AluSg SINE Alu -6 304 1 2269 154 28 42 chr15 20011527 20011579 -81368942 + MSTA LTR MaLR 377 428 0 2150 122 3 0 chr15 20011837 20012141 -81368380 - AluSx SINE Alu -7 305 1 3805 221 18 18 chr15 20012143 20013029 -81367492 + MER54A LTR ERVL 16 901 0 576 186 16 32 chr15 20015962 20016150 -81364371 - L1MA7 LINE L1 -6 6285 6101 1773 243 46 35 chr15 20016365 20017533 -81362988 - L1MC3 LINE L1 -2994 3432 2255 2135 166 32 12 chr15 20017573 20017984 -81362537 + MSTB1 LTR MaLR 1 419 -13 2459 76 0 0 chr15 20018033 20018336 -81362185 + AluY SINE Alu 1 303 -8 794 215 89 7 chr15 20018336 20018601 -81361920 + L1MCa LINE L1 1935 2221 -4205 433 323 165 25 chr15 20018618 20018903 -81361618 - MLT1E LTR MaLR -268 325 1 601 210 14 0 chr15 20018906 20019049 -81361472 - L1MD3 LINE L1 -281 7714 7570 964 196 11 6 chr15 20019329 20019508 -81361013 + AluJb SINE Alu 130 309 -3 4818 229 86 41 chr15 20019521 20020231 -81360290 - L1MC3 LINE L1 -25 8040 7364 1991 119 14 11 chr15 20020231 20020540 -81359981 - AluSc SINE Alu 0 312 3 4818 229 86 41 chr15 20020540 20021474 -81359047 - L1MC3 LINE L1 -701 7364 6301 2575 58 0 10 chr15 20021474 20021787 -81358734 + AluY SINE Alu 1 310 -1 4818 229 86 41 chr15 20021787 20021964 -81358557 - L1MC3 LINE L1 -1764 6301 6134 1835 254 59 33 chr15 20021965 20022635 -81357886 - L1MC3 LINE L1 -721 5733 5028 1558 194 3 40 chr15 20022635 20022828 -81357693 - AluJo SINE Alu 0 312 134 2219 113 3 0 chr15 20022828 20023128 -81357393 - AluSx SINE Alu -11 301 1 1558 194 3 40 chr15 20023128 20023258 -81357263 - AluJo SINE Alu -178 134 1 1835 254 59 33 chr15 20023258 20023573 -81356948 - L1MC3 LINE L1 -1426 5028 4723 852 299 131 18 chr15 20023577 20024243 -81356278 - L1MC3 LINE L1 -1799 4627 3887 443 187 47 19 chr15 20024327 20024515 -81356006 + MLT1E LTR MaLR 355 593 0 758 220 47 8 chr15 20024523 20024759 -81355762 + L1MD3 LINE L1 7731 7975 -20 2408 85 0 0 chr15 20025133 20025427 -81355094 + AluY SINE Alu 1 294 -17 941 163 69 82 chr15 20025800 20026263 -81354258 + THE1C LTR MaLR 1 375 0 1788 131 64 0 chr15 20026946 20027236 -81353285 + AluSx SINE Alu 1 307 0 1194 175 9 22 chr15 20028129 20028358 -81352163 - L1PA15 LINE L1 0 6165 5940 2429 62 10 10 chr15 20028447 20028755 -81351766 - AluY SINE Alu -3 308 1 505 236 124 42 chr15 20028989 20029248 -81351273 + HsTC2 DNA Tc2 1233 1688 -210 1379 214 45 3 chr15 20029814 20030104 -81350417 - AluJb SINE Alu -10 302 1 2261 78 23 13 chr15 20030181 20030489 -81350032 + AluY SINE Alu 1 311 0 403 329 92 12 chr15 20030815 20031055 -81349466 - L1MEc LINE L1 -6046 350 92 2354 90 10 0 chr15 20031273 20031574 -81348947 + AluSp SINE Alu 1 304 -9 656 217 73 62 chr15 20032622 20032929 -81347592 - L1MC3 LINE L1 -3942 2665 2294 2256 88 0 3 chr15 20032929 20033248 -81347273 - AluSg SINE Alu 0 318 1 656 217 73 62 chr15 20033248 20033343 -81347178 - L1MC3 LINE L1 -4313 2294 2201 * 1418 162 0 29 chr15 20033339 20033647 -81346874 + L1MCa LINE L1 1921 2219 -4207 677 253 115 48 chr15 20033647 20033959 -81346562 - MLT1E LTR MaLR -248 345 13 325 311 121 0 chr15 20033973 20034105 -81346416 - L1MD3 LINE L1 -282 7713 7566 3915 250 77 44 chr15 20034359 20036082 -81344439 - L1MC3 LINE L1 -11 7774 5995 2273 84 3 53 chr15 20036096 20036419 -81344102 - AluSq SINE Alu -6 307 1 2364 172 42 4 chr15 20036522 20037022 -81343499 - L1PA15 LINE L1 -360 5794 5276 198 0 0 0 chr15 20037301 20037323 -81343198 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 555 157 0 0 chr15 20037328 20037411 -81343110 - AluSc SINE Alu -21 288 206 303 75 0 0 chr15 20037411 20037451 -81343070 - Alu SINE Alu -263 40 1 411 113 0 0 chr15 20037460 20037522 -81342999 + (TG)n Simple_repeat Simple_repeat 1 62 0 2136 75 0 4 chr15 20037522 20037803 -81342718 - AluY SINE Alu -31 280 1 2363 74 0 0 chr15 20038073 20038371 -81342150 - AluY SINE Alu -13 298 1 390 234 73 92 chr15 20038558 20038776 -81341745 - L1MCa LINE L1 -3759 2667 2454 302 78 0 59 chr15 20038780 20038831 -81341690 - MER75 DNA T2_type -4 500 453 651 202 52 19 chr15 20038853 20039066 -81341455 - L1MCa LINE L1 -3969 2457 2238 781 211 40 46 chr15 20039072 20039376 -81341145 + L1MCa LINE L1 1918 2219 -4207 337 136 11 80 chr15 20039376 20039464 -81341057 - MLT1F1 LTR MaLR -233 334 253 309 284 55 37 chr15 20039552 20039661 -81340860 - MLT1F1 LTR MaLR -482 111 1 497 230 6 67 chr15 20039665 20039830 -81340691 - L1MD3 LINE L1 -282 7713 7559 3094 260 96 47 chr15 20040042 20041687 -81338834 - L1MC3 LINE L1 -6 7779 6033 1600 209 3 0 chr15 20041687 20041983 -81338538 - AluSx SINE Alu -15 297 1 3094 260 96 47 chr15 20041983 20042173 -81338348 - L1MC3 LINE L1 -1752 6033 5854 994 257 62 30 chr15 20042173 20042363 -81338158 - L1MC3 LINE L1 -720 5454 5272 2208 110 0 10 chr15 20042363 20042671 -81337850 + AluSc SINE Alu 4 308 -1 994 257 62 30 chr15 20042671 20043126 -81337395 - L1MC3 LINE L1 -902 5272 4781 * 1379 237 36 14 chr15 20043123 20043629 -81336892 - L1MC3 LINE L1 -2111 4035 3519 260 281 24 0 chr15 20043631 20043713 -81336808 + MLT1E LTR MaLR 350 433 -160 900 190 79 8 chr15 20043817 20044070 -81336451 + L1MD3 LINE L1 7724 7994 -1 2318 81 3 10 chr15 20044409 20044707 -81335814 + AluSc SINE Alu 1 296 -13 1013 270 61 10 chr15 20044921 20045317 -81335204 - L1MC3 LINE L1 -1504 6281 5866 808 228 58 83 chr15 20045387 20045826 -81334695 - MER66A LTR ERV1 -3 475 97 2008 262 66 32 chr15 20045926 20046557 -81333964 - L1MC3 LINE L1 -748 5398 4707 2004 119 13 50 chr15 20046557 20046875 -81333646 - AluSx SINE Alu -6 306 1 2008 262 66 32 chr15 20046875 20047419 -81333102 - L1MC3 LINE L1 -1439 4707 4183 2439 79 0 13 chr15 20047444 20047759 -81332762 - AluY SINE Alu 0 311 1 656 251 55 34 chr15 20047767 20048150 -81332371 - L1MC3 LINE L1 -2190 3956 3566 371 241 131 8 chr15 20048192 20048378 -81332143 + MLT1E LTR MaLR 418 593 0 467 258 38 22 chr15 20048380 20048647 -81331874 + L1MD3 LINE L1 7724 7994 -1 2196 108 0 10 chr15 20049554 20049849 -81330672 - AluY SINE Alu -15 296 5 1398 207 0 39 chr15 20049865 20050170 -81330351 - AluJo SINE Alu -19 293 1 606 265 35 5 chr15 20050172 20050372 -81330149 - L1MC3 LINE L1 -506 7279 7074 1449 291 39 39 chr15 20050386 20050659 -81329862 - L1M4 LINE L1 -1458 4688 4416 1750 118 0 8 chr15 20050659 20050904 -81329617 - AluSg SINE Alu -19 291 49 1449 291 39 39 chr15 20050904 20050999 -81329522 - L1M4 LINE L1 -1730 4416 4322 1684 157 78 28 chr15 20050999 20051356 -81329165 - THE1C LTR MaLR 0 375 1 1449 291 39 39 chr15 20051356 20052155 -81328366 - L1M4 LINE L1 -1823 4323 3520 373 249 296 6 chr15 20052163 20052332 -81328189 + MLT1E LTR MaLR 376 593 0 755 212 45 12 chr15 20052340 20052585 -81327936 + L1MD3 LINE L1 7731 7983 -12 1779 84 88 29 chr15 20052726 20052999 -81327522 - AluSg SINE Alu -21 289 1 687 239 7 0 chr15 20053232 20053421 -81327100 + FAM SINE Alu 1 56 0 1503 255 39 37 chr15 20053628 20054138 -81326383 + MER54A LTR ERVL 19 529 -372 185 160 0 20 chr15 20054184 20054234 -81326287 + (TAGA)n Simple_repeat Simple_repeat 3 51 0 1100 266 34 87 chr15 20054264 20054332 -81326189 - MLT2B3 LTR ERVL -54 500 430 2206 92 4 0 chr15 20054332 20054635 -81325886 - AluY SINE Alu 0 304 1 1100 266 34 87 chr15 20054635 20055092 -81325429 - MLT2B3 LTR ERVL -124 430 2 2475 201 54 2 chr15 20055095 20055673 -81324848 - ERVL-B3 LTR ERVL -20 5744 5137 1508 230 34 37 chr15 20055675 20056084 -81324437 - MSTC LTR MaLR 0 428 21 403 231 66 8 chr15 20056088 20056209 -81324312 - MSTC-int LTR MaLR -1 1734 1607 2419 230 8 69 chr15 20056271 20056998 -81323523 - LTR8 LTR ERV1 -8 683 1 962 258 39 13 chr15 20057001 20057307 -81323214 - HUERS-P1 LTR ERV1 -4 6259 5946 861 252 71 17 chr15 20057412 20057706 -81322815 - PRIMA41-int LTR ERV1 -105 6226 5917 5642 159 51 117 chr15 20057743 20058751 -81321770 - PRIMA41-int LTR ERV1 -299 5422 4350 1950 115 7 17 chr15 20058751 20059038 -81321483 - AluSc SINE Alu -25 284 1 5642 159 51 117 chr15 20059038 20059317 -81321204 - PRIMA41-int LTR ERV1 -1371 4350 4054 1488 180 29 67 chr15 20059317 20059492 -81321029 - AluJb SINE Alu -5 307 148 2213 112 0 3 chr15 20059492 20059786 -81320735 - AluSp SINE Alu -14 299 7 1488 180 29 67 chr15 20059786 20059926 -81320595 - AluJb SINE Alu -164 148 4 5642 159 51 117 chr15 20059926 20060561 -81319960 - PRIMA41-int LTR ERV1 -1667 4054 3729 765 195 124 28 chr15 20060575 20060857 -81319664 - LTR15 LTR ERV1 -18 475 167 3289 197 64 33 chr15 20061045 20061296 -81319225 - PRIMA41-int LTR ERV1 -1588 3292 3050 2389 86 23 0 chr15 20061296 20061598 -81318923 + AluY SINE Alu 1 309 -2 3289 197 64 33 chr15 20061598 20062358 -81318163 - PRIMA41-int LTR ERV1 -1830 3050 1210 1499 237 91 45 chr15 20062383 20062901 -81317620 - PRIMA41-int LTR ERV1 -5442 2095 366 1434 215 75 70 chr15 20062902 20063459 -81317062 - PRIMA41-int LTR ERV1 -5242 1021 462 575 288 0 12 chr15 20063613 20063776 -81316745 - PRIMA41-int LTR ERV1 -6062 201 41 1892 234 11 104 chr15 20063801 20064563 -81315958 - LTR8 LTR ERV1 0 691 1 2102 275 78 64 chr15 20064565 20065537 -81314984 - MSTC-int LTR MaLR -210 1441 449 372 22 0 0 chr15 20065537 20065582 -81314939 + (TG)n Simple_repeat Simple_repeat 2 46 0 2102 275 78 64 chr15 20065582 20065759 -81314762 - MSTC-int LTR MaLR -1202 449 276 7567 21 15 0 chr15 20065763 20066775 -81313746 - L1PA3 LINE L1 0 6155 5136 2620 19 0 0 chr15 20066775 20067097 -81313424 + L1PA3 LINE L1 4817 5138 -1008 709 250 123 35 chr15 20067090 20067146 -81313375 - MSTC-int LTR MaLR -1390 345 295 * 3748 122 80 5 chr15 20067146 20067745 -81312776 - LTR9B LTR ERV1 0 644 1 709 250 123 35 chr15 20067745 20068004 -81312517 - MSTC-int LTR MaLR -1440 295 2 763 193 9 71 chr15 20068006 20068216 -81312305 - MSTC LTR MaLR 0 428 232 1457 182 60 54 chr15 20068216 20068567 -81311954 - LTR10B LTR ERV1 0 547 195 892 179 49 27 chr15 20068691 20068914 -81311607 - MSTC LTR MaLR -193 235 8 775 164 42 12 chr15 20068919 20069084 -81311437 - ERVL-B3 LTR ERVL -624 5140 4971 * 6373 231 22 20 chr15 20069080 20070644 -81309877 - ERVL-B3 LTR ERVL -946 4818 3252 275 353 0 0 chr15 20071540 20071676 -81308845 - PRIMA41-int LTR ERV1 -499 4455 4320 467 339 14 42 chr15 20073438 20073660 -81306861 - PRIMA41-int LTR ERV1 -1990 5766 5539 1963 131 14 0 chr15 20073660 20073950 -81306571 - AluSg SINE Alu -16 294 1 2356 98 0 19 chr15 20073955 20074262 -81306259 - AluSg SINE Alu -9 301 1 467 339 14 42 chr15 20074262 20074464 -81306057 - PRIMA41-int LTR ERV1 -2221 5535 5348 10283 236 55 8 chr15 20075000 20077712 -81302809 - ERVL-B3 LTR ERVL -2905 2859 20 1924 239 35 44 chr15 20077744 20078153 -81302368 - MLT2B3 LTR ERVL -12 542 138 4086 163 23 40 chr15 20078153 20078423 -81302098 - LTR39 LTR ERV1 0 783 510 2233 121 0 0 chr15 20078423 20078729 -81301792 - AluSg SINE Alu -4 306 1 4086 163 23 40 chr15 20078729 20079255 -81301266 - LTR39 LTR ERV1 -273 510 1 1924 239 35 44 chr15 20079255 20079392 -81301129 - MLT2B3 LTR ERVL -416 138 1 1256 264 39 6 chr15 20079392 20079756 -81300765 + MER54A LTR ERVL 522 897 -4 278 343 86 0 chr15 20079946 20080086 -81300435 + HsTC2 DNA Tc2 2 153 -1745 296 264 187 25 chr15 20080175 20080304 -81300217 + HsTC2 DNA Tc2 1508 1615 -283 2051 123 33 41 chr15 20080304 20080669 -81299852 - THE1B LTR MaLR -2 362 1 296 264 187 25 chr15 20080669 20080854 -81299667 + HsTC2 DNA Tc2 1615 1873 -25 801 204 96 119 chr15 20080925 20081396 -81299125 - MER4C LTR ERV1 0 465 6 6241 169 50 43 chr15 20081397 20083238 -81297283 - MER4C-int LTR ERV1 -8 6590 4290 6999 30 1 1 chr15 20083242 20084115 -81296406 - L1PA4 LINE L1 -5 6150 5278 5660 40 0 0 chr15 20084115 20084835 -81295686 + L1P LINE L1 4309 5028 -1118 1091 145 52 76 chr15 20084835 20085124 -81295397 - LOR1-int LTR ERV1 -3404 4716 4435 647 168 0 0 chr15 20085127 20085228 -81295293 + AluJ/FLAM SINE Alu 1 101 -211 2273 141 71 2 chr15 20085229 20085625 -81294896 - LOR1-int LTR ERV1 -1415 5676 5254 2206 59 33 52 chr15 20087132 20087439 -81293082 - AluY SINE Alu -10 301 1 182 226 81 16 chr15 20088180 20088242 -81292279 + MER5B DNA MER1_type 113 178 0 2070 138 6 13 chr15 20089640 20089952 -81290569 + AluSx SINE Alu 1 310 -2 2524 28 0 0 chr15 20091356 20091640 -81288881 - L1PA3 LINE L1 -413 5742 5459 3703 31 12 0 chr15 20091640 20092052 -81288469 + L1PA3 LINE L1 5738 6155 0 1185 234 12 8 chr15 20092060 20092308 -81288213 - AluJo SINE Alu -30 282 34 621 207 5 113 chr15 20092571 20092784 -81287737 - LOR1-int LTR ERV1 -4145 3975 3786 329 273 45 45 chr15 20092916 20093048 -81287473 - LOR1-int LTR ERV1 -3492 4628 4497 * 541 196 129 57 chr15 20093042 20093322 -81287199 - LOR1-int LTR ERV1 -2568 4030 3731 1546 154 24 14 chr15 20093411 20094571 -81285950 + L1P LINE L1 2843 4164 -1982 744 239 22 39 chr15 20094644 20094689 -81285832 - MLT2B3 LTR ERVL 0 554 510 258 116 0 0 chr15 20094689 20094732 -81285789 + (TAGG)n Simple_repeat Simple_repeat 1 43 0 744 239 22 39 chr15 20094732 20094916 -81285605 - MLT2B3 LTR ERVL -44 510 329 556 317 53 41 chr15 20094985 20095379 -81285142 - L1MC3 LINE L1 -925 6860 6462 604 173 9 0 chr15 20095417 20095527 -81284994 - Tigger4(Zombi) DNA MER2_type 0 2731 2621 1228 177 80 121 chr15 20095528 20095940 -81284581 - MER83 LTR ERV1 -7 441 47 385 90 45 30 chr15 20095937 20096004 -81284517 - MER83 LTR ERV1 -344 104 37 * 2214 170 19 0 chr15 20096009 20096368 -81284153 - MER83-int LTR ERV1 -44 4241 3876 2131 133 57 17 chr15 20096345 20096699 -81283822 - MER83-int LTR ERV1 -1244 3041 2674 * 434 167 0 13 chr15 20096711 20096789 -81283732 - MER83-int LTR ERV1 -258 6073 5997 5640 177 84 26 chr15 20096889 20098309 -81282212 - MER83-int LTR ERV1 -523 5423 4059 4123 151 78 30 chr15 20098284 20098965 -81281556 - MER83-int LTR ERV1 -1802 3078 2350 * 2225 100 0 7 chr15 20098965 20099266 -81281255 - AluY SINE Alu -12 299 1 4123 151 78 30 chr15 20099266 20099397 -81281124 - MER83-int LTR ERV1 -2530 2350 2227 2621 168 58 33 chr15 20099395 20100302 -81280219 - MER83-int LTR ERV1 -193 1932 1075 * 3725 179 63 35 chr15 20100320 20101364 -81279157 - MER83-int LTR ERV1 -3725 1155 9 1293 164 82 108 chr15 20101375 20101753 -81278768 - MER83 LTR ERV1 -27 421 54 498 183 10 10 chr15 20101759 20101863 -81278658 - MER83 LTR ERV1 -344 104 1 34 0 0 0 chr15 20101887 20101921 -81278600 + AT_rich Low_complexity Low_complexity 1 34 0 237 83 0 0 chr15 20101923 20101959 -81278562 - HY3 scRNA scRNA -1 100 65 795 146 44 0 chr15 20101959 20102096 -81278425 - Tigger4(Zombi) DNA MER2_type -134 2597 2455 2238 99 7 0 chr15 20102111 20102415 -81278106 - AluSq SINE Alu -7 306 1 3188 187 134 8 chr15 20102415 20103168 -81277353 + Tigger3(Golem) DNA MER2_type 2182 3029 0 2014 131 67 25 chr15 20103178 20103538 -81276983 - MER51B LTR ERV1 -2 375 1 659 207 25 0 chr15 20103539 20103660 -81276861 - MER51B-int LTR ERV1 0 7816 7693 417 229 11 78 chr15 20103883 20104062 -81276459 - MER51B-int LTR ERV1 -6987 829 663 325 176 141 12 chr15 20104139 20104224 -81276297 - MER51B-int LTR ERV1 -3047 2539 2444 * 1680 195 56 125 chr15 20104223 20104817 -81275704 - MER51B-int LTR ERV1 -7263 553 1 1551 155 88 36 chr15 20104817 20105217 -81275304 - MER51B LTR ERV1 0 377 1 880 174 64 0 chr15 20105222 20105394 -81275127 - Tigger4(Zombi) DNA MER2_type -485 2246 2064 1226 270 55 42 chr15 20105427 20105676 -81274845 - L1MC3 LINE L1 -1375 6410 6166 2299 85 0 0 chr15 20105676 20106004 -81274517 - AluY SINE Alu 0 328 1 1226 270 55 42 chr15 20106004 20106297 -81274224 - L1MC3 LINE L1 -1619 6166 5860 708 210 51 56 chr15 20106311 20106748 -81273773 - L1M4 LINE L1 -734 5444 5003 4305 137 56 19 chr15 20106783 20107955 -81272566 + L1PA11 LINE L1 4824 6045 -129 6346 181 20 4 chr15 20107957 20109093 -81271428 + PRIMA41-int LTR ERV1 2740 3893 -3863 2172 108 7 3 chr15 20109184 20109480 -81271041 + AluY SINE Alu 1 297 -14 1252 268 93 80 chr15 20110368 20111130 -81269391 - LTR38B-int LTR ERV1 -971 815 44 938 242 52 121 chr15 20111136 20111632 -81268889 - LTR38B LTR ERV1 -55 555 94 725 136 20 8 chr15 20111641 20111778 -81268743 + L1PA11 LINE L1 6008 6150 -22 349 213 33 17 chr15 20111828 20111999 -81268522 - MLT1E LTR MaLR -15 578 346 1645 270 57 21 chr15 20112048 20112810 -81267711 + L1MC3 LINE L1 4625 5413 -749 1233 224 139 33 chr15 20112879 20113311 -81267210 + MER66A LTR ERV1 96 475 -3 807 223 64 16 chr15 20113358 20113609 -81266912 + L1MC3 LINE L1 5854 6116 -1669 588 15 0 0 chr15 20113613 20113680 -81266841 + L1PA3 LINE L1 6086 6152 -3 1455 246 87 56 chr15 20113728 20114426 -81266095 + L1MC3 LINE L1 6637 7356 -429 2143 130 0 0 chr15 20114445 20114744 -81265777 + AluSx SINE Alu 1 299 -13 429 191 34 177 chr15 20114777 20114905 -81265616 + L1MC3 LINE L1 5200 5269 -915 1232 212 42 46 chr15 20114905 20115188 -81265333 + AluJo SINE Alu 1 282 -30 429 191 34 177 chr15 20115188 20115360 -81265161 + L1MC3 LINE L1 5269 5464 -720 2204 100 0 3 chr15 20115380 20115669 -81264852 - AluY SINE Alu -23 288 1 1347 230 74 14 chr15 20115669 20116086 -81264435 + L1MC3 LINE L1 5858 6299 -1486 8929 98 7 3 chr15 20116237 20117476 -81263045 + L1P LINE L1 2 1245 -4901 609 277 124 0 chr15 20119242 20119516 -81261005 - L2 LINE L2 -2412 902 595 2237 168 31 120 chr15 20119565 20120180 -81260341 - MER7C DNA MER2_type -42 560 1 332 276 156 33 chr15 20120183 20120458 -81260063 - L2 LINE L2 -2793 521 213 3461 141 55 35 chr15 20120827 20121485 -81259036 - LTR1 LTR ERV1 -81 704 34 610 105 29 48 chr15 20121578 20121683 -81258838 - MER41-int LTR ERV1 -1229 4717 4615 2575 53 3 22 chr15 20121683 20122002 -81258519 - L1PA5 LINE L1 0 6154 5842 2107 254 103 35 chr15 20122102 20123261 -81257260 + L1M4 LINE L1 2585 3823 -2323 503 264 70 82 chr15 20125851 20126507 -81254014 + HSREP522 Satellite telomeric 1 648 -179 1455 186 53 82 chr15 20126656 20126944 -81253577 - MLT1A1 LTR MaLR 0 365 87 2174 117 3 0 chr15 20126944 20127273 -81253248 - AluSg SINE Alu 0 330 1 1455 186 53 82 chr15 20127273 20127358 -81253163 - MLT1A1 LTR MaLR -278 87 1 195 114 0 0 chr15 20128736 20128771 -81251750 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1895 122 0 25 chr15 20128798 20129084 -81251437 - AluSq SINE Alu -24 289 11 2073 111 17 10 chr15 20129199 20129497 -81251024 - AluSq SINE Alu -13 300 1 930 148 7 0 chr15 20129498 20129640 -81250881 - AluY SINE Alu -168 143 1 1135 172 128 35 chr15 20130648 20130938 -81249583 - SST1 Satellite centromeric 0 1563 1247 772 154 16 0 chr15 20130975 20131098 -81249423 + AluSg/x SINE Alu 157 281 -31 233 118 0 0 chr15 20131209 20131243 -81249278 + (A)n Simple_repeat Simple_repeat 1 34 0 7240 158 24 17 chr15 20131329 20132715 -81247806 - SST1 Satellite centromeric -167 1396 1 1327 294 60 48 chr15 20133393 20134211 -81246310 - SST1 Satellite centromeric -471 1092 261 357 102 0 0 chr15 20134211 20134270 -81246251 + (CCCCAG)n Simple_repeat Simple_repeat 5 63 0 1327 294 60 48 chr15 20134270 20134314 -81246207 - SST1 Satellite centromeric -1302 261 219 215 315 198 0 chr15 20134600 20134711 -81245810 + MER5A DNA MER1_type 55 187 -2 379 273 23 23 chr15 20134787 20134919 -81245602 + L2 LINE L2 2927 3058 -214 291 298 22 10 chr15 20135259 20135378 -81245143 + MIR SINE MIR 33 152 -65 25 31 0 0 chr15 20136472 20136504 -81244017 + AT_rich Low_complexity Low_complexity 1 32 0 306 267 165 81 chr15 20136833 20137069 -81243452 - MLT1L LTR MaLR -225 390 135 499 273 31 0 chr15 20137221 20137349 -81243172 - L2 LINE L2 -2 3311 3180 495 256 81 24 chr15 20137496 20137663 -81242858 - L1ME LINE L1 -324 5797 5614 661 238 0 0 chr15 20137663 20137789 -81242732 + FLAM_A SINE Alu 1 126 -7 495 256 81 24 chr15 20137789 20137832 -81242689 - L1ME LINE L1 -507 5614 5575 294 281 0 0 chr15 20137841 20138005 -81242516 + (CAT)n Simple_repeat Simple_repeat 1 164 0 * 582 123 8 75 chr15 20137891 20138221 -81242300 + (CACCAT)n Simple_repeat Simple_repeat 1 307 0 218 294 0 0 chr15 20139641 20139709 -81240812 + (CA)n Simple_repeat Simple_repeat 2 69 0 2130 104 10 10 chr15 20141193 20141501 -81239020 - AluY SINE Alu -3 308 1 217 281 94 62 chr15 20141767 20141895 -81238626 - MIR SINE MIR -19 243 112 589 253 103 19 chr15 20142027 20142339 -81238182 + L1MEd LINE L1 902 1239 -4880 398 297 86 51 chr15 20142359 20142756 -81237765 + L1MEd LINE L1 1254 1734 -4440 413 260 54 84 chr15 20143095 20143464 -81237057 - L1M4 LINE L1 -2260 3886 3529 267 161 58 46 chr15 20143575 20143662 -81236859 + MLT1E LTR MaLR 495 582 -11 718 220 42 15 chr15 20143669 20143928 -81236593 + L1MD3 LINE L1 7721 7986 -9 1890 14 5 0 chr15 20145275 20145494 -81235027 - L1PA3 LINE L1 -4 6151 5932 337 300 25 25 chr15 20146773 20146893 -81233628 + HsTC2 DNA Tc2 35 154 -1744 330 242 173 81 chr15 20146890 20147009 -81233512 + HsTC2 DNA Tc2 1233 1340 -558 * 2040 144 0 25 chr15 20147009 20147329 -81233192 + AluSx SINE Alu 1 312 0 330 242 173 81 chr15 20147329 20147544 -81232977 + HsTC2 DNA Tc2 1340 1774 -124 257 257 27 14 chr15 20147719 20147793 -81232728 - MIR SINE MIR -48 214 140 21 0 0 0 chr15 20148001 20148022 -81232499 + AT_rich Low_complexity Low_complexity 1 21 0 303 28 0 0 chr15 20148168 20148204 -81232317 + (TA)n Simple_repeat Simple_repeat 2 37 0 1051 128 14 0 chr15 20148239 20148387 -81232134 - AluSx SINE Alu -149 163 14 519 267 74 27 chr15 20148496 20148792 -81231729 + HsTC2 DNA Tc2 1233 1718 -180 457 129 0 0 chr15 20148817 20148887 -81231634 + Alu SINE Alu 234 303 -9 896 208 113 14 chr15 20148900 20149193 -81231328 - L1MC3 LINE L1 -25 7760 7439 2082 196 39 4 chr15 20149231 20149989 -81230532 - L1P5 LINE L1 -606 5548 4767 271 269 47 35 chr15 20150726 20150897 -81229624 - L1PA15-16 LINE L1 -6436 413 241 31282 44 4 3 chr15 20151120 20156019 -81224502 + L1PA4 LINE L1 1259 6155 0 1803 235 120 79 chr15 20156143 20157397 -81223124 + L1MC3 LINE L1 6474 7779 -6 259 313 20 20 chr15 20157874 20158021 -81222500 + L1MC3 LINE L1 92 238 -6158 290 206 110 14 chr15 20158283 20158356 -81222165 - MLT1E LTR MaLR -159 434 355 1015 284 38 42 chr15 20158373 20158975 -81221546 + L1MC3 LINE L1 3597 4196 -2019 1268 272 68 21 chr15 20159013 20159901 -81220620 + L1MC3 LINE L1 4602 5523 -730 956 258 126 17 chr15 20159901 20160424 -81220097 + L1MC3 LINE L1 5923 6502 -1352 435 261 74 102 chr15 20160458 20161055 -81219466 + L1MC3 LINE L1 6668 7195 -659 347 325 64 29 chr15 20161066 20161411 -81219110 + L1PA15-16 LINE L1 2 358 -6491 3348 214 14 27 chr15 20161679 20162604 -81217917 - LTR57-int LTR ERVL -3822 1521 609 1402 194 33 23 chr15 20162528 20163061 -81217460 - LTR38B-int LTR ERV1 -2351 1934 1341 * 411 319 59 28 chr15 20163395 20163649 -81216872 - LTR38B-int LTR ERV1 -1412 374 113 479 262 87 42 chr15 20163713 20164231 -81216290 - LTR38B LTR ERV1 0 611 64 394 299 109 0 chr15 20164916 20165100 -81215421 - L1MEc LINE L1 -6078 318 115 601 180 44 16 chr15 20165593 20165776 -81214745 - L1MCa LINE L1 -3996 2430 2243 295 132 0 0 chr15 20165792 20165860 -81214661 + L1MCa LINE L1 1921 1988 -4438 447 224 39 75 chr15 20165881 20165901 -81214620 + L1MCa LINE L1 1974 1993 -4433 1975 130 3 23 chr15 20165901 20166201 -81214320 + AluSx SINE Alu 2 295 -17 447 224 39 75 chr15 20166201 20166435 -81214086 + L1MCa LINE L1 1993 2219 -4207 282 291 97 24 chr15 20166497 20166662 -81213859 - MLT1E LTR MaLR -333 260 84 239 229 220 18 chr15 20166746 20166855 -81213666 - L1MC4 LINE L1 -421 7621 7491 21 0 0 0 chr15 20166986 20167007 -81213514 + AT_rich Low_complexity Low_complexity 1 21 0 39 0 0 0 chr15 20167100 20167139 -81213382 + AT_rich Low_complexity Low_complexity 1 39 0 968 205 111 3 chr15 20167140 20167428 -81213093 - L1MC3 LINE L1 -19 7766 7448 962 258 18 40 chr15 20167434 20167564 -81212957 - L1MC3 LINE L1 -384 7401 7270 1885 151 6 26 chr15 20167564 20167876 -81212645 - AluJo SINE Alu -6 306 1 962 258 18 40 chr15 20167876 20168071 -81212450 - L1MC3 LINE L1 -515 7270 7083 1285 285 66 46 chr15 20168089 20168965 -81211556 - L1M4 LINE L1 -1453 4693 3787 180 0 0 0 chr15 20168965 20168985 -81211536 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1285 285 66 46 chr15 20168985 20169259 -81211262 - L1M4 LINE L1 -2359 3787 3520 395 208 52 7 chr15 20169300 20169435 -81211086 + MLT1E LTR MaLR 422 593 0 667 256 24 12 chr15 20169442 20169692 -81210829 + L1MD3 LINE L1 7731 7983 -12 22 0 0 0 chr15 20169782 20169804 -81210717 + AT_rich Low_complexity Low_complexity 1 22 0 349 269 15 15 chr15 20170052 20170182 -81210339 + L1ME1 LINE L1 6011 6140 -26 610 242 6 38 chr15 20170249 20170406 -81210115 + FAM SINE Alu 3 154 -31 471 35 0 0 chr15 20170408 20170465 -81210056 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 2356 77 0 3 chr15 20170522 20170820 -81209701 - AluY SINE Alu -14 297 1 1840 244 32 25 chr15 20170946 20171471 -81209050 + MER54A LTR ERVL 1 529 -372 249 139 0 0 chr15 20171509 20171552 -81208969 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 1626 230 28 83 chr15 20171560 20172125 -81208396 - MLT2B3 LTR ERVL -20 534 1 2603 209 16 5 chr15 20172125 20172736 -81207785 - ERVL-B3 LTR ERVL -7 5757 5140 1770 214 33 33 chr15 20172739 20173165 -81207356 - MSTC LTR MaLR 0 428 3 2343 231 20 52 chr15 20173352 20174041 -81206480 - LTR8 LTR ERV1 -9 682 16 1148 261 19 13 chr15 20174077 20174388 -81206133 - HUERS-P1 LTR ERV1 -5 6258 5946 6845 189 65 74 chr15 20174493 20175744 -81204777 - MER41-int LTR ERV1 -105 6226 4965 2361 77 7 3 chr15 20175744 20176054 -81204467 + AluY SINE Alu 1 311 0 6845 189 65 74 chr15 20176054 20176407 -81204114 - MER41-int LTR ERV1 -1366 4965 4610 1548 193 18 11 chr15 20176407 20176692 -81203829 - AluJo SINE Alu -23 289 3 6845 189 65 74 chr15 20176692 20178598 -81201923 - MER41-int LTR ERV1 -1721 4610 1816 1064 235 89 89 chr15 20178658 20179151 -81201370 - MER41-int LTR ERV1 -4114 3423 2931 2554 223 33 27 chr15 20179166 20180020 -81200501 - MER41-int LTR ERV1 -2594 2286 1280 894 218 66 9 chr15 20180020 20180361 -81200160 - LTR8 LTR ERV1 -364 363 1 899 284 61 78 chr15 20180361 20180892 -81199629 - MSTC-int LTR MaLR -221 1430 923 413 155 0 0 chr15 20180906 20180990 -81199531 + MSTC LTR MaLR 345 428 0 460 222 5 123 chr15 20180990 20181193 -81199328 + MSTC-int LTR MaLR 1 179 -1472 3012 217 11 10 chr15 20181195 20181896 -81198625 - ERVL-B3 LTR ERVL -1001 4763 4062 3216 265 82 12 chr15 20182102 20183321 -81197200 - ERVL-B3 LTR ERVL -4369 1285 10 1738 226 49 55 chr15 20183340 20183752 -81196769 - MLT2B3 LTR ERVL -8 546 136 4177 179 21 8 chr15 20183752 20184525 -81195996 - LTR39 LTR ERV1 0 783 1 1738 226 49 55 chr15 20184525 20184661 -81195860 - MLT2B3 LTR ERVL -418 136 1 1159 249 49 12 chr15 20184676 20185022 -81195499 + MER54A LTR ERVL 538 896 -5 395 273 106 48 chr15 20185350 20185677 -81194844 + HsTC2 DNA Tc2 1236 1543 -355 4766 51 10 0 chr15 20185677 20186262 -81194259 + LTR10C LTR ERV1 1 591 0 395 273 106 48 chr15 20186262 20186372 -81194149 + HsTC2 DNA Tc2 1543 1874 -24 545 215 81 6 chr15 20186452 20186624 -81193897 - MER4C LTR ERV1 -1 464 280 388 223 58 6 chr15 20186683 20186906 -81193615 - MER4C LTR ERV1 -196 269 6 6950 180 49 58 chr15 20186907 20189059 -81191462 - LTR38-int LTR ERV1 -8 6590 4088 1593 196 7 17 chr15 20189059 20189360 -81191161 + AluJb SINE Alu 1 298 -14 6950 180 49 58 chr15 20189360 20189866 -81190655 - LTR38-int LTR ERV1 -2510 4088 3579 1586 206 61 80 chr15 20189871 20189902 -81190619 - LTR38-int LTR ERV1 -1863 3017 2987 1548 211 0 20 chr15 20189902 20190196 -81190325 - AluJo SINE Alu -18 294 7 1586 206 61 80 chr15 20190196 20190752 -81189769 - LTR38-int LTR ERV1 -1893 2987 2441 401 122 27 0 chr15 20190754 20190828 -81189693 - L1PA15 LINE L1 -16 6149 6074 341 204 122 10 chr15 20190959 20191057 -81189464 - LTR38-int LTR ERV1 -5232 1099 991 329 55 14 0 chr15 20191062 20191108 -81189413 - LTR38-int LTR ERV1 -4793 1153 150 481 212 36 15 chr15 20191286 20191423 -81189098 - LTR38-int LTR ERV1 -6346 252 113 1163 202 72 118 chr15 20191518 20192003 -81188518 - MER4C LTR ERV1 0 465 3 236 257 87 22 chr15 20192257 20192440 -81188081 - L1M4 LINE L1 -1079 5067 4873 2016 135 10 19 chr15 20192500 20192686 -81187835 - AluSg SINE Alu -2 308 125 207 0 0 0 chr15 20192686 20192709 -81187812 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2016 135 10 19 chr15 20192709 20192833 -81187688 - AluSg SINE Alu -185 125 1 1134 235 78 35 chr15 20193031 20193456 -81187065 + LTR47B LTR ERVL 1 443 0 1958 311 54 60 chr15 20194500 20196236 -81184285 - LTR38-int LTR ERV1 -3414 3708 1983 784 314 17 25 chr15 20196709 20197066 -81183455 - LTR38-int LTR ERV1 -5860 1262 909 355 303 72 60 chr15 20197360 20197611 -81182910 - LTR38-int LTR ERV1 -6387 735 482 276 355 58 0 chr15 20198171 20198292 -81182229 - LTR38-int LTR ERV1 -971 815 688 930 319 28 35 chr15 20198542 20198937 -81181584 - LTR38-int LTR ERV1 -1342 444 53 3710 102 7 48 chr15 20198958 20199567 -81180954 - L1PA13 LINE L1 -186 5977 5394 1167 192 8 0 chr15 20199564 20199798 -81180723 + L1P LINE L1 3265 3500 -2646 * 22 0 0 0 chr15 20199896 20199918 -81180603 + AT_rich Low_complexity Low_complexity 1 22 0 2871 198 64 3 chr15 20200243 20200854 -81179667 + LTR39 LTR ERV1 1 648 -135 1862 148 0 0 chr15 20200854 20201169 -81179352 - AluSq SINE Alu 0 315 1 915 148 113 4 chr15 20201298 20201527 -81178994 - L1MCa LINE L1 -3961 2465 2212 802 200 39 71 chr15 20201534 20201814 -81178707 + L1MCa LINE L1 1939 2209 -4217 863 299 83 25 chr15 20201814 20202138 -81178383 - MLT1E LTR MaLR -250 343 1 421 313 7 7 chr15 20202142 20202292 -81178229 - L1MD3 LINE L1 -282 7713 7564 3573 254 79 45 chr15 20202527 20204003 -81176518 - L1MC3 LINE L1 -6 7779 6254 2109 286 31 18 chr15 20203993 20204871 -81175650 - L1M4 LINE L1 -1722 4424 3536 * 291 304 10 29 chr15 20204871 20204973 -81175548 + MLT1E LTR MaLR 334 433 -160 634 187 44 128 chr15 20205087 20205338 -81175183 + L1MD3 LINE L1 7753 7982 -13 2271 88 3 0 chr15 20206680 20206974 -81173547 + AluY SINE Alu 3 297 -14 1639 231 5 44 chr15 20208086 20208288 -81172233 + MER54A LTR ERVL 1 181 -720 2658 113 10 12 chr15 20208288 20208705 -81171816 - L1PB1 LINE L1 0 6151 5736 1639 231 5 44 chr15 20208705 20208908 -81171613 + MER54A LTR ERVL 181 390 -511 603 197 29 7 chr15 20208952 20209089 -81171432 - L1MD3 LINE L1 -281 7714 7575 1734 182 116 31 chr15 20209327 20209734 -81170787 - L1MC3 LINE L1 -7 7778 7326 1188 177 3 125 chr15 20209734 20210078 -81170443 - AluJb SINE Alu 0 302 1 1734 182 116 31 chr15 20210078 20210127 -81170394 - L1MC3 LINE L1 -459 7326 7283 405 246 34 17 chr15 20210224 20210303 -81170218 - L1MC3 LINE L1 -740 7045 6969 2078 137 0 0 chr15 20210303 20210596 -81169925 - AluSx SINE Alu -19 293 1 405 246 34 17 chr15 20210596 20210691 -81169830 - L1MC3 LINE L1 -816 6969 6868 913 256 40 7 chr15 20210949 20211246 -81169275 + L1MC3 LINE L1 5861 6167 -1618 1223 210 62 74 chr15 20211364 20211764 -81168757 - MER66A LTR ERV1 -3 475 97 3714 269 63 26 chr15 20211894 20213665 -81166856 - L1M4 LINE L1 -744 5402 3567 412 167 43 88 chr15 20213704 20213890 -81166631 + MLT1F1 LTR MaLR 346 567 0 806 231 30 11 chr15 20213892 20214156 -81166365 + L1MD3 LINE L1 7724 7992 -3 349 297 54 0 chr15 20216259 20216396 -81164125 + HsTC2 DNA Tc2 3 154 -1744 * 704 271 31 57 chr15 20216393 20216874 -81163647 + HsTC2 DNA Tc2 1233 1873 -25 355 333 49 27 chr15 20217144 20217369 -81163152 - L1M4 LINE L1 -1034 5112 4883 1273 232 0 20 chr15 20217502 20217808 -81162713 - AluJo SINE Alu -2 300 1 564 222 11 103 chr15 20218887 20219072 -81161449 - LTR36-int LTR ERV1 -4167 3953 3786 1020 209 33 38 chr15 20219160 20219593 -81160928 - LTR36-int LTR ERV1 -2148 4183 3731 5201 180 76 76 chr15 20219631 20221522 -81158999 - LTR36-int LTR ERV1 -2869 3729 682 1514 200 36 17 chr15 20221511 20222040 -81158481 - LTR36-int LTR ERV1 -2351 1934 1341 * 487 321 56 24 chr15 20222372 20222624 -81157897 - LTR36-int LTR ERV1 -1412 374 115 592 268 118 60 chr15 20222690 20223208 -81157313 - LTR36 LTR ERV1 0 611 64 279 0 0 0 chr15 20223345 20223376 -81157145 + (T)n Simple_repeat Simple_repeat 1 31 0 7878 5 0 0 chr15 20223876 20224761 -81155760 + L1HS LINE L1 5271 6155 0 994 136 0 23 chr15 20224767 20224943 -81155578 + L1MC/D LINE L1 5283 5454 -879 328 141 0 31 chr15 20224917 20224981 -81155540 - L1MC1 LINE L1 -127 6206 6145 * 516 288 110 5 chr15 20225520 20225739 -81154782 - L1MEc LINE L1 -6054 342 101 724 177 111 0 chr15 20226222 20226420 -81154101 - L1MCa LINE L1 -3996 2430 2211 559 191 23 159 chr15 20226416 20226527 -81153994 + L1MCa LINE L1 1919 2043 -4383 * 1854 144 0 33 chr15 20226527 20226833 -81153688 + AluSx SINE Alu 1 296 -16 559 191 23 159 chr15 20226833 20227067 -81153454 + L1MCa LINE L1 2043 2217 -4209 487 306 150 20 chr15 20227079 20227373 -81153148 - MLT1E LTR MaLR -259 334 3 240 248 220 18 chr15 20227380 20227489 -81153032 - L1MC4 LINE L1 -421 7621 7491 37 0 0 0 chr15 20227734 20227771 -81152750 + AT_rich Low_complexity Low_complexity 1 37 0 1774 218 132 25 chr15 20227778 20228202 -81152319 - L1MC3 LINE L1 -23 7762 7262 1824 157 10 26 chr15 20228202 20228515 -81152006 - AluJo SINE Alu -4 308 1 1774 218 132 25 chr15 20228515 20228649 -81151872 - L1MC3 LINE L1 -523 7262 7144 1504 281 61 52 chr15 20228689 20229853 -81150668 - L1M4 LINE L1 -1453 4693 3520 453 222 82 0 chr15 20229894 20230029 -81150492 + MLT1F1 LTR MaLR 422 567 0 771 253 24 8 chr15 20230037 20230286 -81150235 + L1MD3 LINE L1 7731 7983 -12 22 0 0 0 chr15 20230376 20230398 -81150123 + AT_rich Low_complexity Low_complexity 1 22 0 619 229 6 38 chr15 20230649 20230806 -81149715 + FAM SINE Alu 3 154 -31 2081 110 7 3 chr15 20230883 20231184 -81149337 - AluY SINE Alu -9 302 1 1926 249 32 25 chr15 20231329 20231854 -81148667 + MER54A LTR ERVL 1 529 -372 248 143 18 0 chr15 20231890 20231946 -81148575 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 1787 245 32 36 chr15 20231965 20232467 -81148054 - MLT2B3 LTR ERVL -54 500 1 2799 208 25 3 chr15 20232467 20233072 -81147449 - ERVL-B3 LTR ERVL -7 5757 5140 1761 199 40 42 chr15 20233075 20233502 -81147019 - MSTC LTR MaLR 0 428 3 2414 236 23 54 chr15 20233690 20234377 -81146144 - LTR8 LTR ERV1 -10 681 16 1211 258 23 13 chr15 20234413 20234723 -81145798 - HUERS-P1 LTR ERV1 -5 6258 5946 961 208 177 14 chr15 20234804 20235098 -81145423 - LTR49-int LTR ERV1 -57 6274 5933 5036 192 50 59 chr15 20235148 20236437 -81144084 - LTR49-int LTR ERV1 -541 5790 4514 1537 207 11 3 chr15 20236437 20236722 -81143799 - AluJo SINE Alu -23 289 3 5036 192 50 59 chr15 20236722 20236874 -81143647 - LTR49-int LTR ERV1 -1817 4514 4362 4097 169 49 43 chr15 20236870 20238030 -81142491 + MER4C-int LTR ERV1 4958 6590 -8 * 1094 182 126 90 chr15 20238031 20238475 -81142046 + MER4C LTR ERV1 6 465 0 470 262 111 40 chr15 20238554 20238664 -81141857 - HsTC2 DNA Tc2 -24 1874 1773 4795 46 10 0 chr15 20238664 20239249 -81141272 - LTR10C LTR ERV1 0 591 1 470 262 111 40 chr15 20239249 20239570 -81140951 - HsTC2 DNA Tc2 -125 1773 1236 1187 228 37 50 chr15 20239897 20240277 -81140244 - MER54A LTR ERVL -4 897 523 446 216 67 15 chr15 20240277 20240411 -81140110 + MLT2B3 LTR ERVL 1 141 -413 2283 148 46 16 chr15 20240412 20240845 -81139676 + LTR39 LTR ERV1 1 446 -337 18581 45 1 2 chr15 20240845 20243306 -81137215 - L1P LINE L1 -2556 3590 1134 616 284 75 17 chr15 20243312 20243777 -81136744 - L1M4 LINE L1 -2001 4145 3654 1449 204 10 60 chr15 20245195 20245509 -81135012 - AluJo SINE Alu -4 298 1 450 263 258 5 chr15 20245513 20245711 -81134810 + MLT1E LTR MaLR 346 593 0 870 197 30 17 chr15 20245738 20245972 -81134549 + L1MD3 LINE L1 7745 7981 -14 815 201 0 0 chr15 20246005 20246149 -81134372 + FRAM SINE Alu 13 156 -20 1551 196 0 18 chr15 20246879 20247160 -81133361 + AluJb SINE Alu 1 276 -36 481 182 0 25 chr15 20247160 20247281 -81133240 + GA-rich Low_complexity Low_complexity 3 120 0 864 203 121 118 chr15 20248533 20248981 -81131540 - LTR47A LTR ERVL -2 450 2 717 239 52 124 chr15 20249142 20249756 -81130765 - LTR38B LTR ERV1 0 610 41 358 260 42 0 chr15 20250219 20250315 -81130206 - PABL_B-int LTR ERV1 -446 6676 6577 268 274 0 0 chr15 20250258 20250331 -81130190 - HERVL18 LTR ERVL -300 5747 5675 * 861 296 55 26 chr15 20250334 20250828 -81129693 - PABL_B-int LTR ERV1 -589 7167 6660 256 312 9 9 chr15 20251043 20251152 -81129369 - PABL_B-int LTR ERV1 -1309 6447 6339 479 350 13 16 chr15 20251830 20252133 -81128388 - PABL_B-int LTR ERV1 -2913 4209 3908 2298 177 60 11 chr15 20253087 20253945 -81126576 - L1P5 LINE L1 -479 5675 4767 615 303 73 72 chr15 20253956 20255143 -81125378 - L1PA15-16 LINE L1 -5685 1165 1 2129 248 98 55 chr15 20255161 20255672 -81124849 - L1MC3 LINE L1 -659 7195 6708 240 59 0 0 chr15 20255672 20255706 -81124815 + (CA)n Simple_repeat Simple_repeat 1 34 0 2129 248 98 55 chr15 20255706 20256414 -81124107 - L1MC3 LINE L1 -1146 6708 5923 1183 253 40 22 chr15 20256414 20257084 -81123437 - L1MC3 LINE L1 -720 5523 4846 1090 264 35 31 chr15 20257099 20257611 -81122910 - L1MC3 LINE L1 -2105 4110 3597 249 295 13 0 chr15 20257618 20257696 -81122825 + MLT1E LTR MaLR 345 423 -170 358 259 164 9 chr15 20257808 20258028 -81122493 + L1MD3 LINE L1 7733 7986 -9 400 277 130 30 chr15 20259349 20259580 -81120941 - L1MC3 LINE L1 -6051 345 92 386 284 22 0 chr15 20259699 20259833 -81120688 - L1MD3 LINE L1 -288 7707 7571 1079 163 0 0 chr15 20259935 20260095 -81120426 + AluSx SINE Alu 1 160 -152 1080 275 65 2 chr15 20260100 20260565 -81119956 - L1M4 LINE L1 -872 5554 5061 * 1093 254 86 11 chr15 20260563 20261040 -81119481 - L1MCa LINE L1 -2115 4311 3799 343 238 12 0 chr15 20261041 20261121 -81119400 + MLT1E LTR MaLR 349 429 -164 1051 183 53 0 chr15 20261222 20261468 -81119053 + L1MD3 LINE L1 7724 7982 -13 2206 146 25 3 chr15 20262085 20262441 -81118080 - THE1B LTR MaLR 0 364 1 1646 209 6 3 chr15 20264274 20264609 -81115912 + MER54A LTR ERVL 24 359 -542 674 203 14 0 chr15 20264668 20264811 -81115710 - L1MD3 LINE L1 -282 7713 7569 813 221 42 8 chr15 20265041 20265303 -81115218 - L1MC3 LINE L1 -4 7781 7511 292 260 20 20 chr15 20265431 20265531 -81114990 + HERVL18 LTR ERVL 1225 1324 -4723 357 356 24 0 chr15 20266191 20266399 -81114122 + HERVL18 LTR ERVL 1852 2064 -3279 620 360 29 23 chr15 20266494 20266743 -81113778 + HERVL18 LTR ERVL 2312 2558 -2785 1952 169 0 13 chr15 20266743 20267057 -81113464 + AluSx SINE Alu 1 310 -2 620 360 29 23 chr15 20267057 20267496 -81113025 + HERVL18 LTR ERVL 2558 3004 -2339 999 251 34 17 chr15 20267690 20268309 -81112212 - L1MCa LINE L1 -3584 2842 2213 962 207 20 47 chr15 20268315 20268615 -81111906 + L1MCa LINE L1 1925 2216 -4210 386 297 157 13 chr15 20268623 20268852 -81111669 - MLT1E LTR MaLR -253 340 79 639 212 0 20 chr15 20268951 20269102 -81111419 - L1MD3 LINE L1 -283 7712 7565 1522 218 105 4 chr15 20269351 20269810 -81110711 - L1MC3 LINE L1 -6 7779 7275 5936 72 12 1 chr15 20269810 20270624 -81109897 - MER11B LTR ERVK -413 823 1 5978 199 32 56 chr15 20270636 20273343 -81107178 - L1MA1 LINE L1 -17 6285 3654 1403 205 6 75 chr15 20274305 20274627 -81105894 - AluJo SINE Alu -2 300 1 476 253 258 5 chr15 20274631 20274829 -81105692 + MLT1E LTR MaLR 346 593 0 793 225 29 16 chr15 20274856 20275100 -81105421 + L1MD3 LINE L1 7745 7991 -4 794 207 0 0 chr15 20275123 20275268 -81105253 + FRAM SINE Alu 13 157 -19 31 26 0 0 chr15 20275621 20275659 -81104862 + AT_rich Low_complexity Low_complexity 1 38 0 327 283 0 22 chr15 20275858 20275950 -81104571 + L1MC4 LINE L1 6614 6703 -1339 339 300 0 0 chr15 20275952 20276042 -81104479 + L1MC4 LINE L1 6614 6703 -1339 1566 204 19 16 chr15 20276182 20276491 -81104030 + AluJb SINE Alu 3 312 0 254 140 0 20 chr15 20276510 20276560 -81103961 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 966 138 170 167 chr15 20277833 20278281 -81102240 - LTR47A LTR ERVL -2 450 2 895 253 38 112 chr15 20278442 20279101 -81101420 - LTR38B LTR ERV1 0 610 1 1525 306 53 38 chr15 20279298 20280450 -81100071 - LTR38B-int LTR ERV1 -251 7505 6337 1517 328 54 39 chr15 20281111 20282785 -81097736 - PABL_B-int LTR ERV1 -2913 4209 2511 277 273 45 0 chr15 20283000 20283088 -81097433 - PABL_B-int LTR ERV1 -4824 2298 2207 365 209 33 22 chr15 20283218 20283309 -81097212 - PABL_B-int LTR ERV1 -5045 2077 1986 627 325 18 24 chr15 20283802 20284134 -81096387 - PABL_B-int LTR ERV1 -5861 1261 932 287 339 58 0 chr15 20285321 20285442 -81095079 - PABL_B-int LTR ERV1 -971 815 688 782 304 38 46 chr15 20285693 20286088 -81094433 - PABL_B-int LTR ERV1 -1342 444 53 3516 104 10 45 chr15 20286109 20286714 -81093807 - L1PA13 LINE L1 -186 5977 5394 1105 188 8 0 chr15 20286711 20286945 -81093576 + L1P LINE L1 3265 3500 -2646 * 22 80 0 0 chr15 20287043 20287093 -81093428 + AT_rich Low_complexity Low_complexity 1 50 0 2753 182 66 5 chr15 20287387 20287990 -81092531 + LTR39 LTR ERV1 1 640 -143 1881 148 0 0 chr15 20287998 20288313 -81092208 - AluSq SINE Alu 0 315 1 618 212 7 22 chr15 20288313 20288450 -81092071 - AluJo SINE Alu -177 135 1 1374 90 0 0 chr15 20290172 20290350 -81090171 + AluSx SINE Alu 1 178 -134 299 271 69 62 chr15 20290380 20290868 -81089653 - LTR38B LTR ERV1 -65 545 1 243 88 0 0 chr15 20291278 20291312 -81089209 + (TG)n Simple_repeat Simple_repeat 2 35 0 309 346 0 0 chr15 20291388 20291492 -81089029 - PABL_B-int LTR ERV1 -378 6744 6641 1353 261 127 44 chr15 20291559 20292491 -81088030 - L1MC3 LINE L1 -913 7152 6144 583 261 51 5 chr15 20292502 20292864 -81087657 - L1MC3 LINE L1 -725 5733 5355 1669 176 168 8 chr15 20292916 20293285 -81087236 - MSTA LTR MaLR 0 428 1 5480 180 10 14 chr15 20293287 20294317 -81086204 - MSTA-int LTR MaLR -2 1578 553 541 316 128 6 chr15 20294656 20294976 -81085545 - L1MC3 LINE L1 -1033 5393 5035 22 88 0 0 chr15 20296060 20296117 -81084404 + AT_rich Low_complexity Low_complexity 1 57 0 600 201 69 0 chr15 20298028 20298202 -81082319 - L1MA7 LINE L1 0 6291 6106 1949 267 37 11 chr15 20298445 20299602 -81080919 - L1MC3 LINE L1 -3016 3410 2222 313 222 94 8 chr15 20299607 20299724 -81080797 + L1MCa LINE L1 1938 2064 -4362 550 227 70 0 chr15 20299738 20299910 -81080611 + L1MCa LINE L1 2008 2191 -4235 5653 116 3 15 chr15 20299943 20300788 -81079733 - L1PA14 LINE L1 -2 6159 5339 2104 128 0 0 chr15 20300788 20301085 -81079436 - AluY SINE Alu -12 299 3 5653 116 3 15 chr15 20301085 20301868 -81078653 - L1PA14 LINE L1 -822 5339 4549 495 246 116 30 chr15 20301966 20302198 -81078323 - MLT1E LTR MaLR -341 252 1 599 250 0 0 chr15 20302202 20302346 -81078175 - L1MD3 LINE L1 -282 7713 7570 282 29 0 0 chr15 20302569 20302604 -81077917 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2001 118 34 3 chr15 20302626 20302922 -81077599 + AluSx SINE Alu 1 305 -7 1665 232 101 15 chr15 20302942 20303537 -81076984 - L1MC3 LINE L1 -28 7757 7112 2413 172 45 4 chr15 20303560 20303907 -81076614 - L1PB3 LINE L1 -7 6147 5775 321 26 0 0 chr15 20303907 20303945 -81076576 + (CA)n Simple_repeat Simple_repeat 2 39 0 2413 172 45 4 chr15 20303945 20304062 -81076459 - L1PB3 LINE L1 -379 5775 5664 360 0 0 0 chr15 20304062 20304102 -81076419 + (TG)n Simple_repeat Simple_repeat 1 40 0 342 0 0 0 chr15 20304101 20304139 -81076382 + (GA)n Simple_repeat Simple_repeat 1 38 0 * 1592 179 18 0 chr15 20304139 20304412 -81076109 - AluSx SINE Alu -34 278 1 4021 125 1 19 chr15 20304419 20305067 -81075454 + LTR8 LTR ERV1 55 691 0 1068 233 51 86 chr15 20305569 20305755 -81074766 - L1MC3 LINE L1 -472 7313 7122 2053 125 3 23 chr15 20305755 20306058 -81074463 + AluSx SINE Alu 1 297 -15 1068 233 51 86 chr15 20306058 20306404 -81074117 - L1MC3 LINE L1 -663 7122 6800 1754 258 32 5 chr15 20306533 20307098 -81073423 - L1MC3 LINE L1 -1352 6433 5854 1098 214 64 94 chr15 20307141 20307668 -81072853 - MER66A LTR ERV1 0 478 97 308 291 29 0 chr15 20307682 20307854 -81072667 - L1MC3 LINE L1 -748 5398 5222 3830 121 11 10 chr15 20307856 20308475 -81072046 - L1PA13 LINE L1 -6 6157 5538 2008 279 92 70 chr15 20308484 20310373 -81070148 - L1PA13 LINE L1 -707 5461 3528 320 191 36 12 chr15 20310468 20310552 -81069969 + MLT1E LTR MaLR 493 578 -15 786 212 48 8 chr15 20310566 20310816 -81069705 + L1MD3 LINE L1 7721 7980 -15 23 0 0 0 chr15 20310825 20310848 -81069673 + AT_rich Low_complexity Low_complexity 1 23 0 225 376 26 0 chr15 20312634 20312751 -81067770 + HsTC2 DNA Tc2 35 154 -1744 * 613 248 71 44 chr15 20312748 20313042 -81067479 + HsTC2 DNA Tc2 1233 1710 -188 2802 182 28 39 chr15 20313582 20313618 -81066903 - MSTA-int LTR MaLR -1010 641 606 2365 74 0 7 chr15 20313618 20313914 -81066607 - AluY SINE Alu -17 294 1 2802 182 28 39 chr15 20313914 20313989 -81066532 - MSTA-int LTR MaLR -1045 606 532 2253 136 0 0 chr15 20313989 20314299 -81066222 - AluSg SINE Alu 0 310 1 2802 182 28 39 chr15 20314299 20314834 -81065687 - MSTA-int LTR MaLR -1119 532 1 1938 163 129 5 chr15 20314834 20315215 -81065306 - MSTA LTR MaLR 0 428 1 2325 277 60 27 chr15 20315223 20316652 -81063869 - L1MC3 LINE L1 -1152 4994 3519 356 253 24 0 chr15 20316655 20316738 -81063783 + MLT1E LTR MaLR 350 434 -159 831 92 8 0 chr15 20317128 20317248 -81063273 - AluSg/x SINE Alu -15 295 175 294 328 35 0 chr15 20317309 20317425 -81063096 + HsTC2 DNA Tc2 35 154 -1744 693 225 65 33 chr15 20317462 20317769 -81062752 + HsTC2 DNA Tc2 1281 1773 -125 481 265 89 51 chr15 20317974 20318231 -81062290 - L1M4 LINE L1 -1127 5019 4753 1859 157 14 7 chr15 20318235 20318528 -81061993 - AluSx SINE Alu -17 295 1 1205 215 16 60 chr15 20318583 20318899 -81061622 - AluJo SINE Alu 0 302 1 22 0 0 0 chr15 20319025 20319047 -81061474 + AT_rich Low_complexity Low_complexity 1 22 0 1702 174 3 24 chr15 20319048 20319342 -81061179 - AluJb SINE Alu -24 288 1 29 28 0 0 chr15 20320511 20320547 -81059974 + AT_rich Low_complexity Low_complexity 1 36 0 780 188 71 67 chr15 20320550 20320805 -81059716 - MER4-int LTR ERV1 -127 6631 6376 595 216 57 18 chr15 20320774 20320951 -81059570 - MER4-int LTR ERV1 -593 6165 3950 * 1733 123 0 16 chr15 20321035 20321286 -81059235 + AluSc SINE Alu 45 291 -18 898 217 46 39 chr15 20321699 20322123 -81058398 - MER4-int LTR ERV1 -2138 4021 2474 739 168 41 38 chr15 20322206 20322483 -81058038 - MER4-int LTR ERV1 -2900 3698 2403 351 255 9 47 chr15 20322602 20322708 -81057813 + L1MC4 LINE L1 6614 6715 -1327 424 226 35 0 chr15 20323276 20323391 -81057130 + L1MCa LINE L1 2101 2219 -4207 423 282 153 16 chr15 20323391 20323639 -81056882 - MLT1E LTR MaLR -248 345 64 21 0 0 0 chr15 20323942 20323963 -81056558 + AT_rich Low_complexity Low_complexity 1 21 0 42 0 0 0 chr15 20324055 20324097 -81056424 + AT_rich Low_complexity Low_complexity 1 42 0 974 205 111 3 chr15 20324098 20324386 -81056135 - L1MC3 LINE L1 -19 7766 7448 580 221 15 60 chr15 20324392 20324522 -81055999 - L1MC3 LINE L1 -384 7401 7282 1704 182 3 23 chr15 20324522 20324829 -81055692 - AluJo SINE Alu -11 301 1 580 221 15 60 chr15 20324829 20324897 -81055624 - L1MC3 LINE L1 -503 7282 7212 6352 119 24 44 chr15 20324897 20326105 -81054416 - MER11C LTR ERVK 0 1071 1 329 315 23 8 chr15 20326106 20326236 -81054285 - L1MC3 LINE L1 -571 7214 7083 1089 281 64 53 chr15 20326254 20327416 -81053105 - L1M4 LINE L1 -1453 4693 3520 455 214 304 6 chr15 20327424 20327592 -81052929 + MLT1E LTR MaLR 376 593 0 730 240 24 12 chr15 20327600 20327850 -81052671 + L1MD3 LINE L1 7731 7983 -12 667 237 29 35 chr15 20328211 20328384 -81052137 + FAM SINE Alu 3 174 -1 2066 128 0 3 chr15 20328445 20328743 -81051778 - AluY SINE Alu -14 297 1 1734 247 36 25 chr15 20328869 20329392 -81051129 + MER54A LTR ERVL 1 529 -372 1622 259 38 30 chr15 20329476 20330006 -81050515 - MLT2B3 LTR ERVL -20 534 1 2512 206 14 26 chr15 20330006 20330423 -81050098 - ERVL-B3 LTR ERVL -7 5757 5337 186 118 0 0 chr15 20330423 20330457 -81050064 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2279 81 3 0 chr15 20330460 20330745 -81049776 - AluY SINE Alu -25 286 1 2512 206 14 26 chr15 20330745 20330948 -81049573 - ERVL-B3 LTR ERVL -429 5335 5140 1778 216 31 33 chr15 20330952 20331377 -81049144 - MSTC LTR MaLR -2 426 3 238 308 67 0 chr15 20331380 20331500 -81049021 - MSTC-int LTR MaLR -1 1734 1607 2360 232 19 52 chr15 20331563 20332253 -81048268 - LTR8 LTR ERV1 -9 682 16 1094 291 19 6 chr15 20332286 20332602 -81047919 - HUERS-P1 LTR ERV1 0 6263 5944 865 210 179 14 chr15 20332681 20332971 -81047550 - PRIMA41-int LTR ERV1 -57 6274 5937 9334 179 40 89 chr15 20333142 20334120 -81046401 - PRIMA41-int LTR ERV1 -524 5422 4398 207 0 0 0 chr15 20334120 20334143 -81046378 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 9334 179 40 89 chr15 20334143 20334299 -81046222 - PRIMA41-int LTR ERV1 -1548 4398 4236 1595 202 11 11 chr15 20334299 20334586 -81045935 - AluJo SINE Alu -23 289 3 9334 179 40 89 chr15 20334586 20336470 -81044051 - PRIMA41-int LTR ERV1 -1710 4236 1816 1000 261 77 54 chr15 20336530 20337012 -81043509 - PRIMA41-int LTR ERV1 -4114 3423 2931 2543 223 33 27 chr15 20337027 20337881 -81042640 - PRIMA41-int LTR ERV1 -2594 2286 1280 946 211 150 85 chr15 20337881 20338222 -81042299 - LTR8 LTR ERV1 -364 363 1 838 297 55 72 chr15 20338222 20338752 -81041769 - MSTC-int LTR MaLR -221 1430 923 376 179 0 0 chr15 20338766 20338850 -81041671 + MSTC LTR MaLR 345 428 0 428 231 10 128 chr15 20338850 20339053 -81041468 + MSTC-int LTR MaLR 1 179 -1472 3110 215 13 7 chr15 20339055 20339753 -81040768 - ERVL-B3 LTR ERVL -1001 4763 4062 484 292 26 17 chr15 20339764 20339945 -81040576 - PRIMA41-int LTR ERV1 -1990 5766 5581 1933 116 0 77 chr15 20339945 20340272 -81040249 + AluSg SINE Alu 1 302 -8 484 292 26 17 chr15 20340272 20340323 -81040198 - PRIMA41-int LTR ERV1 -2175 5581 5532 9670 232 62 8 chr15 20340845 20343395 -81037126 - ERVL-B3 LTR ERVL -2904 2860 172 1892 219 46 48 chr15 20343558 20343968 -81036553 - MLT2B3 LTR ERVL -8 546 136 4185 176 22 7 chr15 20343968 20344739 -81035782 - LTR39 LTR ERV1 0 783 1 1892 219 46 48 chr15 20344739 20344875 -81035646 - MLT2B3 LTR ERVL -418 136 1 1259 236 50 11 chr15 20344875 20345235 -81035286 + MER54A LTR ERVL 523 896 -5 450 254 102 44 chr15 20345717 20345952 -81034569 + HsTC2 DNA Tc2 1507 1770 -128 4775 56 0 0 chr15 20345952 20346543 -81033978 + LTR10C LTR ERV1 1 591 0 450 254 102 44 chr15 20346543 20346649 -81033872 + HsTC2 DNA Tc2 1770 1868 -30 501 222 102 6 chr15 20346732 20346908 -81033613 - MER4C LTR ERV1 0 465 273 409 225 48 11 chr15 20346968 20347185 -81033336 - MER4A LTR ERV1 -203 262 6 7356 189 52 59 chr15 20347186 20349319 -81031202 - MER4A-int LTR ERV1 -8 6590 2831 1625 201 3 16 chr15 20349319 20349622 -81030899 + AluJb SINE Alu 1 299 -13 7356 189 52 59 chr15 20349622 20350129 -81030392 - MER4A-int LTR ERV1 -3767 2831 2322 1513 230 0 3 chr15 20350169 20350460 -81030061 - AluJo SINE Alu -22 290 1 1605 186 48 81 chr15 20350510 20351015 -81029506 - MER4C-int LTR ERV1 -1952 2928 2441 415 137 14 0 chr15 20351019 20351092 -81029429 - L1PA15 LINE L1 -18 6147 6074 363 184 122 10 chr15 20351223 20351321 -81029200 - MER4C-int LTR ERV1 -5232 1099 991 304 51 0 0 chr15 20351333 20351372 -81029149 - MER4C-int LTR ERV1 -4795 1151 1113 441 209 23 16 chr15 20351558 20351687 -81028834 - MER4C-int LTR ERV1 -6356 242 113 714 213 25 35 chr15 20351782 20352264 -81028257 - MER4C LTR ERV1 0 695 3 343 324 75 42 chr15 20352489 20352688 -81027833 - L1M4 LINE L1 -1050 5096 4882 2435 84 3 0 chr15 20352688 20352997 -81027524 + AluY SINE Alu 1 310 -1 343 324 75 42 chr15 20352997 20353103 -81027418 - L1M4 LINE L1 -1264 4882 4781 1743 118 95 0 chr15 20353106 20353258 -81027263 - AluSx SINE Alu -24 288 152 189 0 0 0 chr15 20353258 20353279 -81027242 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1743 118 95 0 chr15 20353279 20353389 -81027132 - AluSx SINE Alu -160 152 1 463 193 42 8 chr15 20353590 20353709 -81026812 + LTR47A LTR ERVL 1 123 -329 341 250 12 0 chr15 20353759 20353843 -81026678 + LTR47B LTR ERVL 359 443 0 310 234 0 0 chr15 20354773 20354850 -81025671 + LTR57-int LTR ERVL 1248 1324 -4723 390 326 34 8 chr15 20355473 20355730 -81024791 + LTR57-int LTR ERVL 1852 2086 -1332 521 361 22 26 chr15 20355828 20356077 -81024444 + LTR57-int LTR ERVL 2312 2561 -2782 1839 162 3 10 chr15 20356077 20356374 -81024147 + AluSq SINE Alu 1 295 -18 521 361 22 26 chr15 20356374 20356817 -81023704 + LTR57-int LTR ERVL 2561 3001 -2342 892 266 47 6 chr15 20357026 20357620 -81022901 - L1MCa LINE L1 -3595 2831 2213 1029 146 22 95 chr15 20357626 20357941 -81022580 + L1MCa LINE L1 1925 2216 -4210 410 282 124 71 chr15 20357949 20358272 -81022249 - MLT1E LTR MaLR -253 340 1 659 223 0 0 chr15 20358277 20358425 -81022096 - L1MD3 LINE L1 -283 7712 7565 28 29 0 0 chr15 20358431 20358466 -81022055 + AT_rich Low_complexity Low_complexity 1 35 0 4200 253 68 45 chr15 20358672 20359485 -81021036 - L1MC3 LINE L1 -6 7779 6986 2227 125 0 0 chr15 20359485 20359796 -81020725 - AluY SINE Alu 0 311 1 4200 253 68 45 chr15 20359796 20360577 -81019944 - L1MC3 LINE L1 -799 6986 6134 1814 157 3 26 chr15 20360577 20360889 -81019632 - AluSx SINE Alu -7 305 1 4200 253 68 45 chr15 20360889 20361167 -81019354 - L1MC3 LINE L1 -1651 6134 5864 559 251 36 5 chr15 20361177 20361510 -81019011 - L1MC3 LINE L1 -720 5454 5113 231 213 32 32 chr15 20361507 20361601 -81018920 - L1MC3 LINE L1 -987 5159 5066 * 2299 126 55 2 chr15 20361601 20361999 -81018522 - MSTA LTR MaLR 0 428 10 413 286 82 5 chr15 20362048 20362268 -81018253 - L1MC3 LINE L1 -1121 5025 4789 7069 96 4 19 chr15 20362310 20363383 -81017138 - MER11C LTR ERVK -14 1057 1 6217 201 31 54 chr15 20363395 20366098 -81014423 - L1MA1 LINE L1 -17 6285 3654 1437 198 3 75 chr15 20367056 20367375 -81013146 - AluJo SINE Alu -6 296 1 467 258 258 5 chr15 20367379 20367577 -81012944 + MLT1E LTR MaLR 346 593 0 800 214 30 17 chr15 20367604 20367838 -81012683 + L1MD3 LINE L1 7745 7981 -14 23 0 0 0 chr15 20367844 20367867 -81012654 + AT_rich Low_complexity Low_complexity 1 23 0 766 208 0 0 chr15 20367871 20368015 -81012506 + FRAM SINE Alu 13 156 -20 28 48 0 0 chr15 20368362 20368404 -81012117 + AT_rich Low_complexity Low_complexity 1 42 0 285 29 0 0 chr15 20368602 20368636 -81011885 + (TA)n Simple_repeat Simple_repeat 2 35 0 1543 202 0 4 chr15 20368770 20369047 -81011474 + AluJb SINE Alu 1 276 -36 316 198 12 12 chr15 20369047 20369133 -81011388 + GA-rich Low_complexity Low_complexity 3 88 0 272 301 0 0 chr15 20369929 20370012 -81010509 - MER66A-int LTR ERV1 -6387 735 653 273 333 0 0 chr15 20370733 20370823 -81009698 - MER66A-int LTR ERV1 -971 815 726 774 329 25 33 chr15 20371104 20371499 -81009022 - MER66A-int LTR ERV1 -1342 444 53 1544 81 8 8 chr15 20371520 20371756 -81008765 - L1PA12 LINE L1 -191 5977 5742 850 225 89 52 chr15 20371760 20372084 -81008437 - MER66A LTR ERV1 -46 432 97 3069 275 61 28 chr15 20372244 20374025 -81006496 - L1M4 LINE L1 -744 5402 3564 330 190 52 16 chr15 20374066 20374248 -81006273 + MLT1E LTR MaLR 350 593 0 681 230 34 19 chr15 20374250 20374515 -81006006 + L1MD3 LINE L1 7724 7992 -3 306 325 26 0 chr15 20376631 20376748 -81003773 + HsTC2 DNA Tc2 35 154 -1744 * 688 286 29 58 chr15 20376743 20377226 -81003295 + HsTC2 DNA Tc2 1231 1875 -23 348 353 31 9 chr15 20377496 20377720 -81002801 - L1M4 LINE L1 -1034 5112 4884 1318 240 0 13 chr15 20377854 20378158 -81002363 - AluJo SINE Alu -12 300 1 2848 7 0 0 chr15 20378610 20378918 -81001603 + AluY SINE Alu 1 308 -3 259 78 0 4 chr15 20380199 20380418 -81000103 + AluSx SINE Alu 1 300 0 * 284 301 65 63 chr15 20380415 20380904 -80999617 - LTR38 LTR ERV1 -66 490 1 22 35 0 0 chr15 20381172 20381201 -80999320 + AT_rich Low_complexity Low_complexity 1 29 0 312 27 0 0 chr15 20381312 20381349 -80999172 + (TG)n Simple_repeat Simple_repeat 2 38 0 2679 211 88 21 chr15 20381585 20382292 -80998229 - MER49 LTR ERV1 -169 754 1 1134 208 22 45 chr15 20382293 20382667 -80997854 - MER49-int LTR ERV1 -3 7093 6376 624 212 57 18 chr15 20382636 20382813 -80997708 - MER49-int LTR ERV1 -593 6165 3950 * 1682 106 16 8 chr15 20382897 20383142 -80997379 + AluSc SINE Alu 45 291 -18 261 174 0 151 chr15 20383374 20383460 -80997061 - MER49-int LTR ERV1 -4262 3858 3786 977 207 34 37 chr15 20383547 20383979 -80996542 - LTR49-int LTR ERV1 -2147 4184 3731 756 205 43 75 chr15 20384059 20384474 -80996047 - LTR49-int LTR ERV1 -2900 3698 3297 1662 280 4 6 chr15 20384478 20384957 -80995564 - ERVL LTR ERVL -3961 1803 1326 1001 187 6 11 chr15 20384961 20385143 -80995378 - AluSp SINE Alu -18 295 115 1844 15 0 0 chr15 20385243 20385444 -80995077 - AluYa5 SINE Alu -3 308 108 2611 29 0 0 chr15 20385444 20385787 -80994734 - L1P LINE L1 -781 5365 5023 5258 124 2 17 chr15 20385935 20386773 -80993748 - L1PA14 LINE L1 -2 6159 5333 2116 112 7 0 chr15 20386773 20387067 -80993454 - AluY SINE Alu -13 298 3 5258 124 2 17 chr15 20387067 20387123 -80993398 - L1PA14 LINE L1 -828 5333 5278 2439 181 18 13 chr15 20387229 20388135 -80992386 - L1P5 LINE L1 -479 5675 4767 478 313 79 58 chr15 20388146 20389325 -80991196 - L1PA15-16 LINE L1 -5685 1178 3 532 243 100 21 chr15 20389343 20389582 -80990939 - L1MC3 LINE L1 -659 7126 6869 1675 261 89 57 chr15 20389597 20389958 -80990563 - L1MC3 LINE L1 -831 7023 6675 342 80 0 0 chr15 20389958 20390008 -80990513 + (CA)n Simple_repeat Simple_repeat 1 50 0 1675 261 89 57 chr15 20390008 20390713 -80989808 - L1MC3 LINE L1 -1179 6675 5923 1053 269 53 19 chr15 20390713 20391376 -80989145 - L1MC3 LINE L1 -720 5523 4846 1171 256 35 31 chr15 20391391 20391903 -80988618 - L1MC3 LINE L1 -2105 4110 3597 299 309 10 0 chr15 20391910 20392007 -80988514 + MLT1E LTR MaLR 345 442 -151 416 255 148 16 chr15 20392089 20392332 -80988189 + L1MD3 LINE L1 7721 7995 0 387 316 85 9 chr15 20393661 20393873 -80986648 - L1MC3 LINE L1 -6077 319 92 412 284 21 0 chr15 20393983 20394124 -80986397 - L1MD3 LINE L1 -281 7714 7571 1129 150 0 0 chr15 20394224 20394384 -80986137 + AluSx SINE Alu 1 160 -152 1057 278 62 4 chr15 20394389 20394856 -80985665 - L1M4 LINE L1 -872 5274 4781 * 1161 245 86 11 chr15 20394854 20395331 -80985190 - L1M4 LINE L1 -2115 4031 3519 343 238 12 0 chr15 20395332 20395412 -80985109 + MLT1E LTR MaLR 349 429 -164 993 195 53 0 chr15 20395502 20395748 -80984773 + L1MD3 LINE L1 7724 7982 -13 2253 140 28 6 chr15 20396366 20396722 -80983799 - THE1B LTR MaLR 0 364 1 1598 221 6 3 chr15 20398539 20398878 -80981643 + MER54A LTR ERVL 24 363 -538 673 196 14 0 chr15 20398933 20399076 -80981445 - L1MD3 LINE L1 -282 7713 7569 2530 218 83 31 chr15 20399302 20399912 -80980609 - L1MC3 LINE L1 -4 7781 7111 2041 127 3 23 chr15 20399912 20400212 -80980309 + AluSx SINE Alu 1 294 -18 2530 218 83 31 chr15 20400212 20400470 -80980051 - L1MC3 LINE L1 -674 7111 6868 1700 264 32 5 chr15 20400755 20401320 -80979201 - L1MC3 LINE L1 -1352 6433 5854 1040 213 66 99 chr15 20401363 20401890 -80978631 - MER66A LTR ERV1 0 478 97 286 254 28 28 chr15 20401904 20402081 -80978440 - L1MC3 LINE L1 -748 5398 5222 1025 120 23 11 chr15 20402083 20402258 -80978263 - L1PA13 LINE L1 -6 6157 5981 2976 268 70 19 chr15 20402258 20403798 -80976723 - L1MC3 LINE L1 -994 5152 3535 351 202 30 10 chr15 20403900 20403999 -80976522 + MLT1E LTR MaLR 493 593 0 700 186 54 58 chr15 20404001 20404074 -80976447 + L1MD3 LINE L1 7724 7796 -199 2128 102 0 3 chr15 20404074 20404381 -80976140 + AluY SINE Alu 1 306 0 700 186 54 58 chr15 20404381 20404564 -80975957 + L1MD3 LINE L1 7796 7980 -15 23 0 0 0 chr15 20404573 20404596 -80975925 + AT_rich Low_complexity Low_complexity 1 23 0 299 350 26 0 chr15 20406387 20406504 -80974017 + HsTC2 DNA Tc2 35 154 -1744 * 595 241 85 58 chr15 20406501 20406795 -80973726 + HsTC2 DNA Tc2 1233 1710 -188 467 241 100 69 chr15 20407284 20407574 -80972947 - L1M4 LINE L1 -1095 5051 4753 1911 137 14 7 chr15 20407587 20407872 -80972649 - AluSx SINE Alu -20 292 6 1129 244 3 48 chr15 20407933 20408249 -80972272 - AluJo SINE Alu 0 302 1 24 0 0 0 chr15 20408372 20408396 -80972125 + AT_rich Low_complexity Low_complexity 1 24 0 1757 162 3 30 chr15 20408397 20408693 -80971828 - AluJb SINE Alu -24 288 1 1349 72 11 0 chr15 20409474 20409654 -80970867 + AluY SINE Alu 117 298 -13 1387 94 0 0 chr15 20410496 20410676 -80969845 + AluSx SINE Alu 1 180 -132 307 292 63 63 chr15 20410703 20411193 -80969328 - LTR38 LTR ERV1 -66 490 1 252 59 0 0 chr15 20411603 20411637 -80968884 + (TG)n Simple_repeat Simple_repeat 2 35 0 332 345 0 0 chr15 20411713 20411829 -80968692 - LOR1-int LTR ERV1 -378 6744 6629 1702 203 32 23 chr15 20411874 20412583 -80967938 - MER49 LTR ERV1 -169 754 1 1378 203 19 11 chr15 20412584 20412949 -80967572 - MER49-int LTR ERV1 -3 7096 6376 611 202 101 18 chr15 20412918 20413086 -80967435 - MER49-int LTR ERV1 -593 6165 5984 * 1786 105 4 8 chr15 20413178 20413426 -80967095 + AluSc SINE Alu 45 291 -18 21 0 0 0 chr15 20413462 20413483 -80967038 + AT_rich Low_complexity Low_complexity 1 21 0 858 222 26 27 chr15 20413689 20414107 -80966414 - LOR1-int LTR ERV1 -2148 4183 3731 1104 182 59 97 chr15 20414145 20414690 -80965831 - LOR1-int LTR ERV1 -2869 3729 3206 745 145 0 16 chr15 20414735 20414919 -80965602 - LOR1-int LTR ERV1 -3378 3220 1814 3296 264 45 20 chr15 20415026 20415227 -80965294 - ERVL-B3 LTR ERVL -4441 1252 1058 826 219 0 18 chr15 20415227 20415396 -80965125 - FRAM SINE Alu 0 166 1 3296 264 45 20 chr15 20415396 20416397 -80964124 - ERVL-B3 LTR ERVL -4635 1058 1 698 236 13 52 chr15 20416397 20416459 -80964062 - MLT2B3 LTR ERVL 0 554 491 315 0 0 0 chr15 20416459 20416494 -80964027 + (TAGA)n Simple_repeat Simple_repeat 1 35 0 698 236 13 52 chr15 20416494 20416660 -80963861 - MLT2B3 LTR ERVL -63 491 335 1539 249 123 40 chr15 20416740 20417681 -80962840 - L1MC3 LINE L1 -913 7152 6134 2575 271 70 24 chr15 20417682 20418088 -80962433 - L1MC3 LINE L1 -725 5733 5347 1569 188 169 5 chr15 20418088 20418456 -80962065 - MSTA LTR MaLR 0 428 1 8038 191 18 22 chr15 20418458 20419496 -80961025 - MSTA-int LTR MaLR -2 1649 608 183 42 0 0 chr15 20419496 20419520 -80961001 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2081 98 0 7 chr15 20419530 20419806 -80960715 - AluY SINE Alu -37 274 1 8038 191 18 22 chr15 20419806 20419873 -80960648 - MSTA-int LTR MaLR -1052 599 533 2283 118 3 0 chr15 20419873 20420177 -80960344 - AluSg SINE Alu 0 310 6 8038 191 18 22 chr15 20420177 20420716 -80959805 - MSTA-int LTR MaLR -1118 533 1 1864 144 155 11 chr15 20420716 20421090 -80959431 - MSTA LTR MaLR 0 428 1 2575 271 70 24 chr15 20421090 20422532 -80957989 - L1MC3 LINE L1 -1110 5348 3799 519 212 264 5 chr15 20422536 20422729 -80957792 + MLT1E LTR MaLR 351 593 0 722 233 29 10 chr15 20422735 20422941 -80957580 + L1MD3 LINE L1 7729 7938 -57 26 0 0 0 chr15 20422941 20422967 -80957554 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr15 20422995 20423019 -80957502 + AT_rich Low_complexity Low_complexity 1 24 0 1923 248 38 25 chr15 20425190 20426358 -80954163 - L1MC3 LINE L1 -3015 3411 2227 242 215 37 52 chr15 20426353 20426488 -80954033 + L1MCa LINE L1 1936 2068 -4358 * 542 220 45 11 chr15 20426480 20426657 -80953864 + L1MCa LINE L1 2008 2190 -4236 26 30 0 0 chr15 20426657 20426690 -80953831 + AT_rich Low_complexity Low_complexity 1 33 0 5400 116 5 16 chr15 20426694 20427531 -80952990 - L1PA14 LINE L1 -3 6158 5339 2083 100 3 7 chr15 20427531 20427821 -80952700 - AluSc SINE Alu -19 290 2 5400 116 5 16 chr15 20427821 20428605 -80951916 - L1PA14 LINE L1 -822 5339 4547 549 236 88 32 chr15 20428713 20428929 -80951592 - MLT1E LTR MaLR -365 228 1 618 210 3 0 chr15 20428934 20429077 -80951444 - L1MD3 LINE L1 -299 7696 7488 1893 146 36 3 chr15 20429349 20429651 -80950870 + AluSx SINE Alu 1 312 0 1753 240 102 7 chr15 20429668 20430255 -80950266 - L1MC3 LINE L1 -31 7754 7112 2084 153 57 5 chr15 20430278 20430624 -80949897 - L1PB3 LINE L1 -7 6147 5778 393 22 0 0 chr15 20430624 20430670 -80949851 + (CA)n Simple_repeat Simple_repeat 2 47 0 2084 153 57 5 chr15 20430670 20430709 -80949812 - L1PB3 LINE L1 -376 5778 5742 560 208 71 0 chr15 20431804 20431972 -80948549 - L1MA7 LINE L1 -6 6285 6106 1925 269 39 11 chr15 20432215 20433370 -80947151 - L1MCa LINE L1 -3016 3410 2222 312 221 47 55 chr15 20433375 20433502 -80947019 + L1MCa LINE L1 1936 2061 -4365 496 207 120 0 chr15 20433504 20433654 -80946867 + L1MCa LINE L1 2007 2174 -4252 24 32 0 0 chr15 20433669 20433700 -80946821 + AT_rich Low_complexity Low_complexity 1 31 0 7272 38 11 0 chr15 20433700 20434909 -80945612 - L1PA3 LINE L1 -5 6150 4936 276 29 0 0 chr15 20434909 20434944 -80945577 + L1P LINE L1 4368 4402 -1744 7449 163 48 9 chr15 20434944 20437157 -80943364 - MER50-int LTR ERV1 -804 4076 3039 555 223 8 8 chr15 20437157 20437278 -80943243 - MER50-int LTR ERV1 -4296 2909 2789 * 7658 162 93 22 chr15 20437272 20438967 -80941554 - MER50-int LTR ERV1 -436 4781 4 1481 193 21 59 chr15 20438976 20439364 -80941157 - MER50 LTR ERV1 -10 724 352 649 207 37 24 chr15 20439446 20439610 -80940911 - MER50 LTR ERV1 -568 166 1 6681 261 36 26 chr15 20439610 20441679 -80938842 - ERVL-B2 LTR ERVL -3502 2262 172 2379 92 3 0 chr15 20441717 20442020 -80938501 + AluSx SINE Alu 1 304 -8 500 251 33 47 chr15 20442142 20442353 -80938168 - MLT2B2 LTR ERVL 0 515 308 710 292 32 83 chr15 20442452 20442595 -80937926 - L1MC3 LINE L1 -922 6863 6714 2047 155 0 0 chr15 20442595 20442892 -80937629 + AluSx SINE Alu 1 297 -15 710 292 32 83 chr15 20442892 20443183 -80937338 - L1MC3 LINE L1 -1071 6714 6451 4160 163 20 4 chr15 20443201 20443901 -80936620 - MER50 LTR ERV1 -23 711 1 2138 134 15 149 chr15 20443917 20444453 -80936068 - Tigger4(Zombi) DNA MER2_type 0 2731 2268 4761 167 138 15 chr15 20444454 20444604 -80935917 + Tigger3b DNA MER2_type 2 132 -2896 2093 210 59 11 chr15 20444604 20445042 -80935479 + LOR1b LTR ERV1 1 459 -2 4761 167 138 15 chr15 20445042 20445986 -80934535 + Tigger3b DNA MER2_type 132 1231 0 955 181 17 6 chr15 20445999 20446176 -80934345 - Tigger4(Zombi) DNA MER2_type -489 2242 2064 1278 231 79 36 chr15 20446213 20446681 -80933840 - L1MC3 LINE L1 -1375 6410 5923 1048 132 0 0 chr15 20446800 20446944 -80933577 - AluSg/x SINE Alu -16 296 153 1025 260 70 28 chr15 20446944 20447556 -80932965 - L1MC3 LINE L1 -748 5398 4783 3756 146 172 110 chr15 20447634 20449029 -80931492 - pTR5 LTR ERV1 -133 2021 36 279 303 92 7 chr15 20449372 20449514 -80931007 + HsTC2 DNA Tc2 1 154 -1744 * 296 287 157 28 chr15 20449511 20449727 -80930794 + HsTC2 DNA Tc2 1233 1652 -246 1962 141 10 16 chr15 20449793 20450105 -80930416 - AluSg SINE Alu 0 310 1 183 315 41 14 chr15 20450266 20450339 -80930182 - MIR SINE MIR -48 214 140 265 253 84 45 chr15 20450489 20450691 -80929830 - L1M4 LINE L1 -1054 5092 4883 576 179 0 0 chr15 20450857 20450969 -80929552 + CT-rich Low_complexity Low_complexity 3 114 0 1583 221 0 3 chr15 20450971 20451265 -80929256 - AluJb SINE Alu -19 293 1 2521 265 78 81 chr15 20451451 20452670 -80927851 - MSTC-int LTR MaLR -434 1217 3 1636 236 30 10 chr15 20452685 20453091 -80927430 - MSTC LTR MaLR -14 414 1 3411 254 21 8 chr15 20453101 20453945 -80926576 - ERVL-B3 LTR ERVL -637 5127 4273 * 5895 210 34 3 chr15 20453941 20455099 -80925422 - ERVL-B3 LTR ERVL -1720 4044 2852 3963 230 40 1 chr15 20455246 20456124 -80924397 - ERVL-B3 LTR ERVL -2915 2849 1938 2083 211 27 52 chr15 20456297 20457103 -80923418 - LTR27 LTR ERV1 -140 496 3 2436 278 5 5 chr15 20457103 20457719 -80922802 - ERVL-B3 LTR ERVL -3823 1941 1326 1271 184 0 5 chr15 20457723 20457946 -80922575 - AluSq SINE Alu -10 303 82 976 55 0 24 chr15 20457993 20458120 -80922401 - L1PA4 LINE L1 0 6155 6032 619 176 0 0 chr15 20458124 20458215 -80922306 - AluSq SINE Alu -221 91 1 4137 265 79 18 chr15 20458215 20458492 -80922029 - ERVL-B3 LTR ERVL -4433 1331 1072 900 200 0 51 chr15 20458492 20458667 -80921854 - FRAM SINE Alu 0 166 1 4137 265 79 18 chr15 20458667 20459643 -80920878 - ERVL-B3 LTR ERVL -4692 1072 2 666 258 13 64 chr15 20459644 20459714 -80920807 - MLT2B3 LTR ERVL 0 554 482 456 19 0 0 chr15 20459714 20459767 -80920754 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 666 258 13 64 chr15 20459767 20459929 -80920592 - MLT2B3 LTR ERVL -72 482 334 1826 253 126 42 chr15 20460008 20460942 -80919579 - L1MC3 LINE L1 -913 6872 5860 682 252 55 10 chr15 20460942 20461304 -80919217 - L1MC3 LINE L1 -720 5458 5079 1882 169 169 5 chr15 20461355 20461723 -80918798 - MSTA LTR MaLR 0 428 1 9017 193 18 10 chr15 20461725 20462766 -80917755 - MSTA-int LTR MaLR -2 1649 618 2405 70 0 7 chr15 20462766 20463067 -80917454 - AluY SINE Alu -12 299 1 9017 193 18 10 chr15 20463067 20463127 -80917394 - MSTA-int LTR MaLR -1033 618 560 2361 112 0 0 chr15 20463127 20463430 -80917091 - AluSg SINE Alu -7 303 1 9017 193 18 10 chr15 20463430 20463962 -80916559 - MSTA-int LTR MaLR -1091 560 1 2154 170 123 5 chr15 20463962 20464345 -80916176 - MSTA LTR MaLR 0 428 1 808 267 27 52 chr15 20464451 20464781 -80915740 - L1MC3 LINE L1 -2306 3840 3519 618 238 264 5 chr15 20464785 20464978 -80915543 + MLT1E LTR MaLR 351 593 0 977 219 29 8 chr15 20464984 20465230 -80915291 + L1MD3 LINE L1 7729 7979 -16 884 65 16 0 chr15 20467739 20467862 -80912659 - AluSp/q SINE Alu -12 301 177 262 342 44 0 chr15 20467924 20468038 -80912483 + HsTC2 DNA Tc2 36 154 -1744 807 238 65 23 chr15 20468075 20468447 -80912074 + HsTC2 DNA Tc2 1281 1848 -50 435 345 98 9 chr15 20468702 20469050 -80911471 - L1M4 LINE L1 -1013 5133 4755 28 71 0 0 chr15 20470112 20470168 -80910353 + AT_rich Low_complexity Low_complexity 1 56 0 606 138 0 0 chr15 20471294 20471388 -80909133 - L1P5 LINE L1 -397 5757 5664 378 0 0 0 chr15 20471388 20471430 -80909091 + (TG)n Simple_repeat Simple_repeat 1 42 0 285 129 6 0 chr15 20471446 20471494 -80909027 - Alu SINE Alu -20 282 242 1161 277 73 38 chr15 20471531 20472343 -80908178 - L1M4 LINE L1 -1659 4487 3648 1365 195 6 114 chr15 20473293 20473626 -80906895 - AluJo SINE Alu -5 297 1 584 219 265 15 chr15 20473632 20473828 -80906693 + MLT1E LTR MaLR 349 593 0 930 205 29 20 chr15 20473855 20474099 -80906422 + L1MD3 LINE L1 7745 7990 -5 791 217 0 0 chr15 20474121 20474264 -80906257 + FRAM SINE Alu 13 155 -21 31 26 0 0 chr15 20474611 20474649 -80905872 + AT_rich Low_complexity Low_complexity 1 38 0 308 194 28 14 chr15 20474890 20474962 -80905559 + L1MCa LINE L1 1996 2068 -4358 195 184 0 0 chr15 20474964 20475002 -80905519 + (TATG)n Simple_repeat Simple_repeat 1 38 0 1466 192 0 38 chr15 20475135 20475422 -80905099 + AluJb SINE Alu 1 276 -36 277 205 13 13 chr15 20475422 20475500 -80905021 + GA-rich Low_complexity Low_complexity 3 80 0 617 213 8 0 chr15 20476770 20476892 -80903629 - LTR47A LTR ERVL -3 449 327 1770 305 58 45 chr15 20477048 20478202 -80902319 - PABL_B-int LTR ERV1 -251 7505 6337 2262 316 47 44 chr15 20478811 20480546 -80899975 - PABL_B-int LTR ERV1 -2913 4209 2511 29 0 0 0 chr15 20532656 20532685 -80847836 + AT_rich Low_complexity Low_complexity 1 29 0 1017 136 81 10 chr15 20532981 20533179 -80847342 - MER101 LTR ERV1 -1 473 262 1710 148 93 0 chr15 20533186 20533308 -80847213 + AluSx SINE Alu 9 118 -194 216 0 0 0 chr15 20533308 20533332 -80847189 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1710 148 93 0 chr15 20533332 20533487 -80847034 + AluSx SINE Alu 118 312 0 719 158 0 0 chr15 20533525 20533645 -80846876 - MER101 LTR ERV1 -354 120 1 300 365 33 39 chr15 20533748 20533929 -80846592 - HAL1 LINE L1 -2326 181 2 653 208 48 24 chr15 20534701 20534908 -80845613 - AluSg/x SINE Alu -11 298 87 4180 203 22 18 chr15 20535023 20535059 -80845462 - L1MB2 LINE L1 -14 6393 6359 771 227 7 7 chr15 20535059 20535209 -80845312 - FRAM SINE Alu -16 150 1 4180 203 22 18 chr15 20535209 20535552 -80844969 - L1MB2 LINE L1 -48 6359 6019 1114 186 53 9 chr15 20535552 20535778 -80844743 + MER46A DNA MER2_type 1 236 0 4180 203 22 18 chr15 20535778 20536917 -80843604 - L1MB2 LINE L1 -388 6019 4874 2047 185 67 85 chr15 20536935 20537478 -80843043 + MER67B LTR ERV1 1 486 -175 2810 176 75 52 chr15 20537478 20538189 -80842332 - LTR8A LTR ERV1 0 727 1 2047 185 67 85 chr15 20538189 20538221 -80842300 + MER67B LTR ERV1 486 517 -144 5568 132 31 13 chr15 20539299 20540763 -80839758 - L1P LINE L1 -1277 4869 3183 1698 213 35 25 chr15 20540863 20541374 -80839147 - L1MB2 LINE L1 -4696 1688 1173 554 269 88 35 chr15 20541370 20541473 -80839048 - L1MB2 LINE L1 -5499 885 789 * 2240 102 6 13 chr15 20541473 20541787 -80838734 + AluSx SINE Alu 1 312 0 554 269 88 35 chr15 20541787 20542025 -80838496 - L1MB2 LINE L1 -5595 789 526 309 316 35 18 chr15 20543399 20543513 -80837008 - MIR SINE MIR -73 135 20 247 286 0 13 chr15 20544491 20544568 -80835953 + MIR SINE MIR 128 203 -59 709 294 59 88 chr15 20544840 20545532 -80834989 - L2 LINE L2 -1 3312 2633 808 103 9 9 chr15 20545532 20545648 -80834873 + AluSg1 SINE Alu 1 116 -193 1962 123 10 10 chr15 20545856 20546175 -80834346 - AluSx SINE Alu 0 312 1 1969 150 7 3 chr15 20546179 20546473 -80834048 - AluSx SINE Alu -16 296 2 2294 119 44 0 chr15 20546542 20546885 -80833636 + Tigger3(Golem) DNA MER2_type 2604 2961 -68 2494 172 78 38 chr15 20546886 20547086 -80833435 + MER4B LTR ERV1 1 192 -418 1965 138 17 0 chr15 20547086 20547383 -80833138 + AluSx SINE Alu 4 305 -7 2494 172 78 38 chr15 20547383 20547734 -80832787 + MER4B LTR ERV1 192 574 -36 238 246 82 0 chr15 20547769 20547830 -80832691 + Tigger3(Golem) DNA MER2_type 2963 3028 -1 407 274 40 0 chr15 20548188 20548312 -80832209 + L1MEc LINE L1 111 239 -6157 1214 171 5 0 chr15 20548777 20548982 -80831539 + MER47A DNA MER2_type 3 208 -158 495 217 9 17 chr15 20549397 20549545 -80830976 + ALR/Alpha Satellite centromeric 1 146 -62 416 225 25 17 chr15 20549837 20549957 -80830564 - Tigger5 DNA MER2_type -22 2301 2181 3032 198 34 16 chr15 20550177 20550820 -80829701 + L1PA16 LINE L1 5493 6147 -19 313 113 38 0 chr15 20550822 20550875 -80829646 + L1PA16 LINE L1 6105 6159 -7 844 238 196 55 chr15 20550937 20551472 -80829049 + L1MC3 LINE L1 4614 5321 -853 2268 91 20 3 chr15 20551472 20551768 -80828753 - AluSq SINE Alu -11 302 2 844 238 196 55 chr15 20551768 20551925 -80828596 + L1MC3 LINE L1 5321 5454 -720 428 230 9 9 chr15 20551925 20552038 -80828483 + L1MC3 LINE L1 5854 5966 -2076 836 255 18 99 chr15 20552042 20552426 -80828095 + L1MC3 LINE L1 6646 6998 -787 261 57 0 0 chr15 20552482 20552517 -80828004 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 418 163 12 12 chr15 20552571 20552657 -80827864 + L1MC3 LINE L1 7497 7582 -203 7677 105 4 1 chr15 20552758 20553856 -80826665 - L1P LINE L1 -3261 2885 1785 4607 150 7 39 chr15 20553850 20555142 -80825379 + L1P3 LINE L1 853 2092 -4369 * 874 142 39 0 chr15 20555152 20555307 -80825214 - L1M2 LINE L1 -821 5479 5319 2005 122 32 131 chr15 20555407 20555962 -80824559 + L1MA2 LINE L1 5265 6304 0 3788 212 102 56 chr15 20555977 20557226 -80823295 + L1MC3 LINE L1 5858 7164 -621 1629 123 3 78 chr15 20557229 20557513 -80823008 - L1PA15 LINE L1 -2 6163 5901 1771 199 14 11 chr15 20557513 20557884 -80822637 + L1P LINE L1 4092 4463 -1683 8498 94 39 20 chr15 20557884 20559035 -80821486 + HSMAR1 DNA Mariner 1 1178 -109 2090 114 0 0 chr15 20559035 20559344 -80821177 + AluSx SINE Alu 1 309 0 8498 94 39 20 chr15 20559344 20559409 -80821112 + HSMAR1 DNA Mariner 1178 1240 -47 9293 207 29 37 chr15 20559510 20562664 -80817857 - L1P3 LINE L1 -3325 3136 5 1252 258 11 28 chr15 20562661 20563014 -80817507 - L1MC3 LINE L1 -931 6854 6508 * 1319 244 113 15 chr15 20563020 20563211 -80817310 - L1MC3 LINE L1 -1418 6367 6196 438 20 0 0 chr15 20563211 20563262 -80817259 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1319 244 113 15 chr15 20563262 20563538 -80816983 - L1MC3 LINE L1 -1589 6196 5854 2812 251 49 91 chr15 20563538 20564503 -80816018 - L1MC3 LINE L1 -730 5454 4450 1600 89 31 0 chr15 20564503 20564728 -80815793 - L1MA4A LINE L1 -6 6297 6066 2812 251 49 91 chr15 20564728 20565037 -80815484 - L1MC3 LINE L1 -1734 4450 4130 7372 60 14 0 chr15 20565037 20566404 -80814117 + L1PA7 LINE L1 4774 6152 -2 2812 251 49 91 chr15 20566404 20567076 -80813445 - L1MC3 LINE L1 -2054 4130 3638 666 179 50 7 chr15 20567176 20567316 -80813205 + LTR10C LTR ERV1 446 591 0 2247 114 0 0 chr15 20568739 20569038 -80811483 + AluSx SINE Alu 7 305 -7 2445 102 151 5 chr15 20569228 20569619 -80810902 - LTR7 LTR ERV1 -2 448 1 2410 96 48 13 chr15 20569619 20569996 -80810525 - HERVH LTR ERV1 0 7713 7324 1215 163 9 26 chr15 20569996 20570223 -80810298 - HERVH LTR ERV1 -1894 5819 5597 8075 126 1 1 chr15 20570224 20571389 -80809132 - HERVH LTR ERV1 -2567 5146 3994 1552 150 0 4 chr15 20571399 20571645 -80808876 - HERVH LTR ERV1 -3977 3736 3492 1005 120 7 0 chr15 20571635 20571785 -80808736 - HERVH LTR ERV1 -4423 3290 3140 * 14914 110 21 11 chr15 20571779 20574493 -80806028 - HERVH LTR ERV1 -4726 2987 1 2626 90 125 8 chr15 20574495 20574896 -80805625 - LTR7 LTR ERV1 -2 448 1 331 264 39 16 chr15 20575445 20575574 -80804947 - L1MEc LINE L1 -6153 243 112 4315 88 22 0 chr15 20575734 20576361 -80804160 - L1P LINE L1 -1063 5083 4443 5839 34 4 1 chr15 20576461 20577161 -80803360 - L1P LINE L1 -1566 4580 3879 2275 33 3 0 chr15 20577152 20578082 -80802439 + L1PA2 LINE L1 5089 6155 0 * 3356 34 5 0 chr15 20578093 20578477 -80802044 + L1PA4 LINE L1 5770 6155 0 336 292 70 70 chr15 20578722 20579006 -80801515 - HsTC2 DNA Tc2 -198 1700 1241 5138 103 5 1 chr15 20580162 20580824 -80799697 - MER4A LTR ERV1 0 664 1 2811 133 164 30 chr15 20580929 20581470 -80799051 - LTR18B LTR ERVL 0 614 1 2661 246 53 31 chr15 20581619 20582446 -80798075 - L1MDa LINE L1 -3138 3402 2547 2286 73 30 3 chr15 20582446 20582748 -80797773 - AluY SINE Alu -1 310 1 2661 246 53 31 chr15 20582748 20582975 -80797546 - L1MDa LINE L1 -3993 2547 2326 944 201 22 48 chr15 20582985 20583258 -80797263 + L1MCa LINE L1 1955 2220 -4206 983 268 104 19 chr15 20583258 20583575 -80796946 - MLT1E LTR MaLR -249 344 1 571 261 49 0 chr15 20583579 20583721 -80796800 - L1MD3 LINE L1 -282 7713 7565 532 163 0 10 chr15 20583965 20584063 -80796458 - L1MC3 LINE L1 -11 7774 7678 262 277 25 57 chr15 20584168 20584327 -80796194 - L1M4 LINE L1 -2391 3755 3602 3794 234 126 17 chr15 20584354 20585647 -80794874 - L1M4 LINE L1 -1112 5034 3601 382 190 83 33 chr15 20585732 20585833 -80794688 + MLT1E LTR MaLR 281 427 -166 904 199 99 5 chr15 20585891 20586102 -80794419 - MER34 LTR ERV1 -283 259 29 264 270 22 108 chr15 20586138 20586360 -80794161 - MER34-int LTR ERV1 -20 6311 6109 25 51 0 0 chr15 20586679 20586718 -80793803 + AT_rich Low_complexity Low_complexity 1 39 0 33 25 0 0 chr15 20586776 20586816 -80793705 + AT_rich Low_complexity Low_complexity 1 40 0 15285 88 11 2 chr15 20586816 20588953 -80791568 - L1P LINE L1 -818 5336 3177 465 348 103 11 chr15 20590408 20590759 -80789762 + L1M4 LINE L1 4755 5137 -1009 183 296 19 0 chr15 20590860 20590914 -80789607 + MIR SINE MIR 137 191 -71 863 269 83 28 chr15 20591011 20591446 -80789075 - HsTC2 DNA Tc2 -22 1876 1242 2414 73 0 25 chr15 20591446 20591761 -80788760 - AluY SINE Alu -4 307 1 251 354 35 0 chr15 20591777 20591890 -80788631 - HsTC2 DNA Tc2 -1744 154 38 247 241 0 0 chr15 20592135 20592189 -80788332 - MER54A LTR ERVL -834 67 14 252 218 36 0 chr15 20592387 20592442 -80788079 - MER52A LTR ERV1 0 1755 1699 5005 226 78 47 chr15 20592454 20592994 -80787527 - MER52A LTR ERV1 -270 1485 964 180 0 0 0 chr15 20592994 20593014 -80787507 + (CTCTG)n Simple_repeat Simple_repeat 1 20 0 5005 226 78 47 chr15 20593014 20593912 -80786609 - MER52A LTR ERV1 -791 964 1 868 246 104 106 chr15 20594095 20595070 -80785451 + LTR28 LTR ERV1 1 1755 0 656 224 64 4 chr15 20595071 20595336 -80785185 + L1M4 LINE L1 5215 5485 -699 552 223 0 9 chr15 20596836 20596948 -80783573 + FLAM_A SINE Alu 20 130 -12 200 278 0 0 chr15 20597398 20597452 -80783069 + MIR SINE MIR 1 54 -208 213 255 0 0 chr15 20598348 20598399 -80782122 + MIR SINE MIR 24 74 -188 2308 92 0 7 chr15 20598465 20598771 -80781750 - AluSx SINE Alu -8 304 1 1991 132 24 7 chr15 20603541 20603865 -80776656 - AluSx SINE Alu 0 312 1 237 33 0 0 chr15 20604167 20604197 -80776324 + (TG)n Simple_repeat Simple_repeat 2 31 0 785 317 65 18 chr15 20604332 20604729 -80775792 - L2 LINE L2 -71 3242 2827 286 78 20 20 chr15 20604921 20604972 -80775549 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 1663 224 42 8 chr15 20604978 20605335 -80775186 + MLT1A2 LTR MaLR 2 370 -4 476 13 66 0 chr15 20605338 20605414 -80775107 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 657 103 0 0 chr15 20605513 20605600 -80774921 - AluY SINE Alu -20 291 205 3033 44 14 0 chr15 20606437 20606804 -80773717 + LTR10C LTR ERV1 1 372 -219 373 269 86 82 chr15 20606904 20607172 -80773349 + L1M4 LINE L1 4828 5096 -1050 2744 39 39 3 chr15 20607329 20607696 -80772825 + L1PA4 LINE L1 5785 6163 0 327 239 72 43 chr15 20607864 20608002 -80772519 - HsTC2 DNA Tc2 -25 1873 1732 923 155 19 0 chr15 20608002 20608163 -80772358 + L1M2 LINE L1 5509 5672 -619 565 311 75 23 chr15 20608165 20608470 -80772051 - HsTC2 DNA Tc2 -169 1729 1233 245 284 113 32 chr15 20608467 20608609 -80771912 - HsTC2 DNA Tc2 -1744 154 3 * 2431 84 3 0 chr15 20609133 20609441 -80771080 + AluSx SINE Alu 1 309 -3 253 269 0 15 chr15 20609913 20609980 -80770541 - LTR38 LTR ERV1 -362 194 129 1127 235 209 26 chr15 20610637 20611218 -80769303 + L1M4 LINE L1 4591 5301 -845 1606 141 15 19 chr15 20611218 20611488 -80769033 + AluJb SINE Alu 26 294 -18 1127 235 209 26 chr15 20611488 20611548 -80768973 + L1M4 LINE L1 5301 5349 -797 2685 204 79 25 chr15 20611589 20612128 -80768393 + L1MC3 LINE L1 7072 7656 -129 2211 61 0 48 chr15 20612128 20612461 -80768060 + AluY SINE Alu 1 319 0 2685 204 79 25 chr15 20612461 20612590 -80767931 + L1MC3 LINE L1 7656 7777 -8 200 173 0 39 chr15 20612698 20612750 -80767771 + T-rich Low_complexity Low_complexity 2 51 0 535 247 34 14 chr15 20612826 20612972 -80767549 + L1MD3 LINE L1 7565 7713 -282 772 296 71 40 chr15 20612987 20613311 -80767210 + MLT1E LTR MaLR 12 345 -248 1108 157 43 62 chr15 20613311 20613350 -80767171 - L1MCa LINE L1 -4207 2219 2181 2175 119 0 0 chr15 20613350 20613645 -80766876 + AluSx SINE Alu 1 295 -17 1108 157 43 62 chr15 20613645 20613910 -80766611 - L1MCa LINE L1 -4245 2181 1921 * 2864 228 46 27 chr15 20613908 20614043 -80766478 + L1MCa LINE L1 2212 2343 -4083 1513 176 3 44 chr15 20614043 20614361 -80766160 + AluJo SINE Alu 1 305 -7 2864 228 46 27 chr15 20614361 20615412 -80765109 + L1MCa LINE L1 2343 3412 -3014 2994 182 8 45 chr15 20616813 20617459 -80763062 + MER54B LTR ERVL 1 678 -115 337 155 0 52 chr15 20619965 20620023 -80760498 - HERVL74 LTR ERVL -1048 4637 4583 * 1032 148 7 0 chr15 20620005 20620160 -80760361 - HERVL74 LTR ERVL -1612 4073 3918 895 183 7 13 chr15 20620163 20620316 -80760205 - HERVL74 LTR ERVL -2043 3642 3491 2186 225 33 39 chr15 20620317 20620887 -80759634 - HERVL74 LTR ERVL -2353 3332 2766 2496 194 25 15 chr15 20620920 20621440 -80759081 - HERVL74 LTR ERVL -2873 2812 2288 1562 107 60 0 chr15 20621440 20621655 -80758866 - MER30 DNA MER1_type 0 230 3 186 103 0 0 chr15 20621876 20621905 -80758616 + (TC)n Simple_repeat Simple_repeat 2 30 0 1974 181 19 2 chr15 20623250 20623880 -80756641 + MER54B LTR ERVL 1 682 -111 365 267 120 35 chr15 20624092 20624350 -80756171 + L1MEc LINE L1 62 341 -6055 21 57 0 0 chr15 20625198 20625233 -80755288 + AT_rich Low_complexity Low_complexity 1 35 0 8091 29 1 1 chr15 20625240 20626324 -80754197 + L1PA4 LINE L1 5072 6155 0 376 303 88 19 chr15 20626976 20627293 -80753228 + L1M4 LINE L1 4754 5092 -1054 321 327 157 9 chr15 20627339 20627562 -80752959 + MIR SINE MIR 7 262 0 332 240 70 23 chr15 20627601 20627730 -80752791 - HsTC2 DNA Tc2 -23 1875 1741 811 174 15 0 chr15 20627770 20627946 -80752575 + L1M2 LINE L1 5517 5707 -595 2025 135 10 0 chr15 20629210 20629506 -80751015 + AluSg SINE Alu 1 299 -11 1661 193 146 57 chr15 20629634 20630307 -80750214 - LTR48 LTR ERV1 0 644 1 2152 96 7 0 chr15 20630430 20630722 -80749799 + AluY SINE Alu 14 307 -4 23 33 0 0 chr15 20630746 20630776 -80749745 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr15 20631201 20631223 -80749298 + AT_rich Low_complexity Low_complexity 1 22 0 639 200 8 0 chr15 20631369 20631489 -80749032 - MER70B LTR ERVL -419 159 39 911 198 70 40 chr15 20631528 20631826 -80748695 - L1ME1 LINE L1 -118 6048 5742 2173 238 62 32 chr15 20632048 20632222 -80748299 - L1ME1 LINE L1 -918 5228 5061 405 0 0 0 chr15 20632222 20632267 -80748254 + (TG)n Simple_repeat Simple_repeat 1 45 0 1519 189 18 4 chr15 20632268 20632548 -80747973 - AluJb SINE Alu -28 284 1 2173 238 62 32 chr15 20632548 20633192 -80747329 - L1ME1 LINE L1 -1084 5062 4383 2529 61 3 6 chr15 20634996 20635308 -80745213 - AluY SINE Alu 0 311 1 1862 221 8 3 chr15 20635818 20636180 -80744341 - MER54B LTR ERVL -428 365 2 444 215 136 58 chr15 20636342 20636584 -80743937 - HsTC2 DNA Tc2 -231 1667 1231 283 261 14 0 chr15 20636581 20636650 -80743871 - HsTC2 DNA Tc2 -1747 151 82 * 368 318 13 26 chr15 20637633 20637787 -80742734 - MLT1E LTR MaLR -441 152 1 758 187 43 0 chr15 20637791 20637930 -80742591 - L1MD3 LINE L1 -282 7713 7569 1590 201 0 7 chr15 20637996 20638280 -80742241 + AluJb SINE Alu 1 282 -30 1357 128 0 5 chr15 20638300 20638496 -80742025 - AluSg/x SINE Alu -32 278 84 2671 229 120 91 chr15 20638680 20639264 -80741257 - L1MC3 LINE L1 0 7785 7219 229 292 0 14 chr15 20639264 20639336 -80741185 - MLT1H LTR MaLR -401 148 78 2671 229 120 91 chr15 20639336 20639572 -80740949 - L1MC3 LINE L1 -566 7219 6991 239 0 32 0 chr15 20639572 20639603 -80740918 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2671 229 120 91 chr15 20639603 20640114 -80740407 - L1MC3 LINE L1 -794 6991 6342 589 287 80 3 chr15 20640163 20640449 -80740072 - L1MC3 LINE L1 -1624 6161 5854 3385 212 45 150 chr15 20640458 20641528 -80738993 - L1MC3 LINE L1 -725 5453 4272 2030 150 0 0 chr15 20641528 20641822 -80738699 - AluSq SINE Alu -19 294 1 3385 212 45 150 chr15 20641822 20641874 -80738647 - L1MC3 LINE L1 -1906 4272 4216 1266 203 0 8 chr15 20641874 20642111 -80738410 - AluJo SINE Alu -77 235 1 3385 212 45 150 chr15 20642111 20642125 -80738396 - L1MC3 LINE L1 -1962 4216 4202 2172 99 0 3 chr15 20642125 20642408 -80738113 - AluSx SINE Alu -20 292 11 3385 212 45 150 chr15 20642408 20643208 -80737313 - L1MC3 LINE L1 -1976 4202 3520 386 228 213 25 chr15 20643208 20643405 -80737116 + MLT1E LTR MaLR 346 622 -2 747 227 50 12 chr15 20643406 20643648 -80736873 + L1MD3 LINE L1 7721 7971 -24 5001 181 20 24 chr15 20643649 20644654 -80735867 - L1MA7 LINE L1 -2 6289 5287 3844 98 8 6 chr15 20644654 20645164 -80735357 - MER9 LTR ERVK 0 511 1 5001 181 20 24 chr15 20645164 20645189 -80735332 - L1MA7 LINE L1 -1004 5287 5263 4200 94 25 4 chr15 20645825 20646377 -80734144 - LTR6A LTR ERV1 0 564 1 3706 226 79 21 chr15 20647414 20648264 -80732257 + MER54A LTR ERVL 3 901 0 1027 247 87 31 chr15 20648562 20649020 -80731501 + HsTC2 DNA Tc2 1216 1875 -23 234 319 21 11 chr15 20649104 20649198 -80731323 - MIR SINE MIR -36 226 132 22 80 0 0 chr15 20649476 20649526 -80730995 + AT_rich Low_complexity Low_complexity 1 50 0 1533 201 3 13 chr15 20651017 20651315 -80729206 + AluJo SINE Alu 1 295 -17 1704 211 28 11 chr15 20651330 20651686 -80728835 - MER47A DNA MER2_type -1 365 4 322 256 12 0 chr15 20652093 20652179 -80728342 - L1MEc LINE L1 -6210 186 100 2330 95 0 3 chr15 20652236 20652531 -80727990 + AluSc SINE Alu 1 294 -15 2495 171 38 71 chr15 20652795 20653093 -80727428 - MER7C DNA MER2_type -2426 602 296 2345 84 3 0 chr15 20653093 20653389 -80727132 + AluSp SINE Alu 1 297 -16 2495 171 38 71 chr15 20653389 20653578 -80726943 - MER7C DNA MER2_type -2732 296 133 1783 156 3 59 chr15 20653578 20653898 -80726623 + AluSx SINE Alu 1 302 -10 2495 171 38 71 chr15 20653898 20654016 -80726505 - MER7C DNA MER2_type -2895 133 13 2054 93 14 4 chr15 20654254 20654533 -80725988 + AluSg SINE Alu 1 282 -28 349 206 113 64 chr15 20654546 20654687 -80725834 - HsTC2 DNA Tc2 -344 1554 1231 2356 78 0 10 chr15 20655680 20655987 -80724534 + AluY SINE Alu 2 305 -6 1941 285 32 22 chr15 20656820 20656902 -80723619 - L1MCa LINE L1 -3014 3412 3332 198 0 0 0 chr15 20656902 20656924 -80723597 + (TA)n Simple_repeat Simple_repeat 2 23 0 2390 54 40 0 chr15 20656925 20657221 -80723300 - AluSg SINE Alu 0 310 3 1941 285 32 22 chr15 20657221 20657589 -80722932 - L1MCa LINE L1 -3094 3332 2969 2892 88 3 0 chr15 20657589 20657943 -80722578 + THE1A LTR MaLR 1 355 0 1941 285 32 22 chr15 20657943 20658310 -80722211 - L1MCa LINE L1 -3457 2969 2584 1111 108 0 7 chr15 20658311 20658459 -80722062 - AluSg/x SINE Alu -94 218 72 441 193 59 8 chr15 20658515 20658634 -80721887 - L1MA8 LINE L1 -4 6287 6163 249 216 0 0 chr15 20658632 20658683 -80721838 - L1ME LINE L1 -706 5740 5690 * 1399 141 49 20 chr15 20658670 20658763 -80721758 - L1MCa LINE L1 -3954 2472 2383 1565 187 18 0 chr15 20658763 20659072 -80721449 - AluSx SINE Alu 0 314 1 1399 141 49 20 chr15 20659072 20659322 -80721199 - L1MCa LINE L1 -4043 2383 2210 362 193 118 8 chr15 20659322 20659421 -80721100 + L1MCa LINE L1 1921 2036 -4390 183 42 0 0 chr15 20659421 20659445 -80721076 + (TG)n Simple_repeat Simple_repeat 2 25 0 362 193 118 8 chr15 20659445 20659464 -80721057 + L1MCa LINE L1 2036 2052 -4374 509 248 165 0 chr15 20659469 20659602 -80720919 - MER41E LTR ERV1 -335 177 23 5565 228 77 43 chr15 20660039 20660196 -80720325 - L1MC3 LINE L1 -6 7779 7629 2086 117 0 3 chr15 20660196 20660513 -80720008 - AluSx SINE Alu 0 316 1 5565 228 77 43 chr15 20660513 20662213 -80718308 - L1MC3 LINE L1 -156 7629 5858 2011 132 13 7 chr15 20662226 20662530 -80717991 - AluSq SINE Alu -7 306 1 1428 251 71 18 chr15 20662531 20663168 -80717353 - L1MC3 LINE L1 -722 5452 4782 1682 230 6 11 chr15 20663168 20663516 -80717005 - MER52A LTR ERV1 0 1755 1410 1073 282 8 56 chr15 20663539 20664151 -80716370 - MER52A LTR ERV1 -570 1185 464 1138 184 41 33 chr15 20664151 20664396 -80716125 - LTR12 LTR ERV1 -251 463 217 48 95 0 0 chr15 20665080 20665164 -80715357 + AT_rich Low_complexity Low_complexity 1 84 0 719 94 0 28 chr15 20666171 20666277 -80714244 - FLAM_C SINE Alu -4 139 37 1312 184 58 41 chr15 20666322 20666664 -80713857 - MLT1B LTR MaLR 0 390 43 1390 205 85 53 chr15 20666665 20666767 -80713754 - MER39 LTR ERV1 0 707 610 2139 112 0 3 chr15 20666767 20667061 -80713460 - AluSq SINE Alu -20 293 1 1390 205 85 53 chr15 20667061 20667439 -80713082 - MER39 LTR ERV1 -97 610 4 2459 54 0 7 chr15 20667719 20668017 -80712504 - AluY SINE Alu -15 296 1 2175 113 7 0 chr15 20668079 20668371 -80712150 - AluSx SINE Alu -18 294 1 2379 85 0 3 chr15 20668376 20668683 -80711838 - AluY SINE Alu -4 307 2 287 313 0 0 chr15 20668719 20668799 -80711722 - L1ME1 LINE L1 -30 6136 6057 10312 198 36 10 chr15 20668800 20670425 -80710096 - MER70B-int LTR ERVL -1326 3697 2008 2342 109 0 0 chr15 20670425 20670729 -80709792 + AluSq SINE Alu 1 304 -9 10312 198 36 10 chr15 20670729 20671128 -80709393 - MER70B-int LTR ERVL -3015 2008 1621 5643 189 51 14 chr15 20671138 20671199 -80709322 - MER70B-int LTR ERVL -3867 1156 1099 1984 125 21 0 chr15 20671199 20671488 -80709033 - AluSg SINE Alu -15 295 1 5643 189 51 14 chr15 20671488 20672541 -80707980 - MER70B-int LTR ERVL -3924 1099 1 2020 225 19 16 chr15 20672545 20673030 -80707491 - MER70B LTR ERVL -2 576 91 797 239 0 6 chr15 20673031 20673190 -80707331 - MER70A LTR ERVL -314 158 1 512 256 211 0 chr15 20673193 20673416 -80707105 - L1ME1 LINE L1 -127 6039 5770 818 132 8 0 chr15 20673431 20673552 -80706969 - AluSp/q SINE Alu -21 292 171 23 33 0 0 chr15 20673558 20673588 -80706933 + AT_rich Low_complexity Low_complexity 1 30 0 773 182 0 198 chr15 20673637 20673715 -80706806 - L1ME1 LINE L1 -493 5671 5572 1903 144 3 33 chr15 20673715 20673850 -80706671 + AluSx SINE Alu 1 138 -174 2145 106 0 14 chr15 20673850 20674133 -80706388 + AluSx SINE Alu 1 279 -33 309 26 0 0 chr15 20674133 20674171 -80706350 + (CA)n Simple_repeat Simple_repeat 1 38 0 1903 144 3 33 chr15 20674171 20674340 -80706181 + AluSx SINE Alu 136 297 -15 773 182 0 198 chr15 20674340 20674463 -80706058 - L1ME1 LINE L1 -592 5572 5559 311 59 0 20 chr15 20674463 20674514 -80706007 + (TG)n Simple_repeat Simple_repeat 1 50 0 773 182 0 198 chr15 20674514 20674728 -80705793 - L1ME1 LINE L1 -605 5559 5285 832 259 55 64 chr15 20674779 20674877 -80705644 - L1ME1 LINE L1 -917 5229 5132 2250 110 3 0 chr15 20674877 20675177 -80705344 - AluSx SINE Alu -11 301 1 832 259 55 64 chr15 20675177 20675533 -80704988 - L1ME1 LINE L1 -1014 5132 4779 203 224 0 20 chr15 20675533 20675582 -80704939 + (TA)n Simple_repeat Simple_repeat 2 49 0 1197 248 48 48 chr15 20675585 20675670 -80704851 - L1ME1 LINE L1 -1330 4816 4732 2198 96 3 0 chr15 20675670 20675976 -80704545 + AluSp SINE Alu 1 307 0 1197 248 48 48 chr15 20675976 20676156 -80704365 - L1ME1 LINE L1 -1414 4732 4553 2262 101 0 7 chr15 20676156 20676452 -80704069 + AluSg SINE Alu 1 294 -16 1197 248 48 48 chr15 20676452 20676684 -80703837 - L1ME1 LINE L1 -1592 4554 4317 2144 110 7 0 chr15 20677712 20678004 -80702517 + AluSx SINE Alu 1 294 -18 453 50 0 0 chr15 20678567 20678627 -80701894 + (CGGGGG)n Simple_repeat Simple_repeat 2 61 0 2057 82 0 94 chr15 20679242 20679584 -80700937 - AluSc SINE Alu 0 309 1 1695 233 22 0 chr15 20679708 20680064 -80700457 - MER54B LTR ERVL -429 364 1 738 230 146 42 chr15 20680198 20680533 -80699988 - HsTC2 DNA Tc2 -122 1776 1231 278 259 0 0 chr15 20680529 20680587 -80699934 - HsTC2 DNA Tc2 -1756 142 85 * 22 0 0 0 chr15 20680598 20680620 -80699901 + AT_rich Low_complexity Low_complexity 1 22 0 2186 83 10 20 chr15 20680667 20680968 -80699553 - AluSq SINE Alu -15 298 1 1164 178 18 4 chr15 20681263 20681488 -80699033 - AluJb SINE Alu -1 311 84 404 211 16 24 chr15 20682612 20682735 -80697786 - L1ME1 LINE L1 -2973 3173 3052 681 219 7 0 chr15 20682768 20682905 -80697616 - L1MD3 LINE L1 -282 7713 7576 1430 213 3 56 chr15 20682989 20683313 -80697208 + AluJb SINE Alu 1 307 -5 2651 221 126 12 chr15 20683409 20683753 -80696768 - L1MC3 LINE L1 -11 7774 7471 2405 71 3 0 chr15 20683753 20684047 -80696474 - AluY SINE Alu -16 295 1 2651 221 126 12 chr15 20684047 20684501 -80696020 - L1MC3 LINE L1 -314 7471 6885 646 193 39 8 chr15 20684506 20684653 -80695868 - MSTC LTR MaLR -244 152 1 439 253 0 108 chr15 20685003 20685078 -80695443 + MER54A LTR ERVL 1 83 -818 1932 129 20 14 chr15 20685078 20685373 -80695148 + AluSx SINE Alu 1 297 -15 439 253 0 108 chr15 20685373 20685491 -80695030 + MER54A LTR ERVL 83 173 -728 233 277 24 24 chr15 20685615 20685698 -80694823 - MIR SINE MIR -39 223 141 2240 118 0 7 chr15 20685861 20686167 -80694354 + AluSx SINE Alu 1 304 -8 243 274 154 30 chr15 20686223 20686457 -80694064 - L1 LINE L1 -1125 5021 4759 3821 135 47 72 chr15 20688053 20688762 -80691759 - LTR8 LTR ERV1 0 691 1 1869 124 11 28 chr15 20688869 20689151 -80691370 + AluSg SINE Alu 1 277 -33 3529 122 16 2 chr15 20689151 20689653 -80690868 + LTR10D LTR ERV1 4 512 -1 3954 96 49 2 chr15 20689948 20690477 -80690044 - MER41A LTR ERV1 0 554 1 28 48 0 0 chr15 20690560 20690602 -80689919 + AT_rich Low_complexity Low_complexity 1 42 0 1751 181 47 0 chr15 20690846 20691189 -80689332 - MER47A DNA MER2_type 0 366 8 771 153 0 0 chr15 20691371 20691482 -80689039 + AluSg/x SINE Alu 192 302 -10 3300 173 22 10 chr15 20691504 20692098 -80688423 - MER7C DNA MER2_type 0 602 2 266 238 38 76 chr15 20692304 20692409 -80688112 - HsTC2 DNA Tc2 -345 1553 1277 257 246 98 0 chr15 20692440 20692501 -80688020 - HsTC2 DNA Tc2 -1747 151 85 331 245 19 9 chr15 20694246 20694352 -80686169 - L1 LINE L1 -3014 3132 3026 35 0 0 0 chr15 20694352 20694387 -80686134 + AT_rich Low_complexity Low_complexity 1 35 0 2104 98 0 7 chr15 20694387 20694682 -80685839 - AluY SINE Alu -18 293 1 2300 110 7 0 chr15 20694686 20694994 -80685527 - AluSq SINE Alu -3 310 1 614 232 40 27 chr15 20695031 20695255 -80685266 - L1 LINE L1 -3138 3008 2782 246 139 0 0 chr15 20695255 20695298 -80685223 - MER49 LTR ERV1 0 923 881 * 4156 159 27 22 chr15 20695294 20695397 -80685124 - MER49 LTR ERV1 -206 717 616 2276 113 0 0 chr15 20695397 20695697 -80684824 - AluSx SINE Alu -12 300 1 4156 159 27 22 chr15 20695697 20696303 -80684218 - MER49 LTR ERV1 -307 616 5 858 246 86 4 chr15 20696308 20696588 -80683933 - L1 LINE L1 -3588 2558 2256 729 203 22 11 chr15 20696591 20696773 -80683748 - L1MA8 LINE L1 -2 6569 6386 1034 141 7 0 chr15 20696773 20696922 -80683599 - AluJb SINE Alu -34 278 129 1797 200 44 69 chr15 20696944 20697729 -80682792 - L1MA8 LINE L1 -192 6379 5576 2553 47 0 10 chr15 20697729 20698026 -80682495 - AluY SINE Alu -17 294 1 1797 200 44 69 chr15 20698026 20698335 -80682186 - L1MA8 LINE L1 -995 5576 2213 402 189 79 0 chr15 20698335 20698462 -80682059 + L1MCa LINE L1 1918 2054 -4372 239 191 0 0 chr15 20698462 20698509 -80682012 + LTR66 LTR ERVL 393 439 -171 548 264 7 0 chr15 20698515 20698663 -80681858 + L1MCa LINE L1 2052 2200 -4226 834 265 118 29 chr15 20698669 20698982 -80681539 - MLT1E LTR MaLR -248 345 5 527 273 7 0 chr15 20698991 20699134 -80681387 - L1MD3 LINE L1 -283 7712 7569 1628 153 3 40 chr15 20699207 20699507 -80681014 + AluJb SINE Alu 1 289 -23 5236 243 57 58 chr15 20699577 20701216 -80679305 - L1MC3 LINE L1 0 7785 6146 1946 136 0 34 chr15 20701216 20701546 -80678975 - AluSx SINE Alu 0 320 1 5236 243 57 58 chr15 20701546 20701835 -80678686 - L1MC3 LINE L1 -1639 6146 5858 660 234 47 0 chr15 20701838 20702059 -80678462 - L1MC3 LINE L1 -720 5454 5225 2417 84 3 0 chr15 20702059 20702358 -80678163 - AluY SINE Alu -11 300 1 2516 67 13 0 chr15 20702645 20702945 -80677576 + AluY SINE Alu 2 305 -6 328 325 26 0 chr15 20703149 20703266 -80677255 + HsTC2 DNA Tc2 35 154 -1744 * 1008 233 89 28 chr15 20703264 20703701 -80676820 + HsTC2 DNA Tc2 1234 1873 -25 257 287 56 9 chr15 20703772 20703880 -80676641 - MIR SINE MIR -31 231 119 723 200 23 0 chr15 20704254 20704384 -80676137 + AluJo SINE Alu 3 135 -177 2429 106 0 0 chr15 20704387 20704698 -80675823 + AluSx SINE Alu 1 311 -1 2260 110 3 0 chr15 20704954 20705253 -80675268 + AluSx SINE Alu 3 302 -10 1933 81 84 0 chr15 20706161 20706280 -80674241 + AluSx SINE Alu 1 109 -203 273 29 0 0 chr15 20706280 20706314 -80674207 + (CA)n Simple_repeat Simple_repeat 2 35 0 1933 81 84 0 chr15 20706314 20706467 -80674054 + AluSx SINE Alu 109 296 -16 39 22 0 0 chr15 20707624 20707670 -80672851 + AT_rich Low_complexity Low_complexity 1 46 0 2173 112 3 10 chr15 20707763 20708075 -80672446 + AluSx SINE Alu 1 310 -2 653 235 56 34 chr15 20708289 20708468 -80672053 + MER58A DNA MER1_type 16 198 -26 231 274 32 32 chr15 20709104 20709199 -80671322 - L1ME LINE L1 -5928 142 48 695 165 0 0 chr15 20709366 20709475 -80671046 - AluSg/x SINE Alu -21 291 183 682 140 0 0 chr15 20709477 20709577 -80670944 - AluJo/FLAM SINE Alu -199 113 14 2121 107 0 31 chr15 20709854 20710144 -80670377 + AluSq SINE Alu 1 281 -32 288 0 0 0 chr15 20710144 20710176 -80670345 + (GA)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr15 20710823 20710845 -80669676 + AT_rich Low_complexity Low_complexity 1 22 0 2064 124 18 72 chr15 20711029 20711100 -80669421 - MER47A DNA MER2_type -1957 366 293 2284 98 3 0 chr15 20711100 20711385 -80669136 + AluSg SINE Alu 1 286 -24 2064 124 18 72 chr15 20711385 20711700 -80668821 - MER47A DNA MER2_type -2030 293 1 1975 153 20 0 chr15 20712282 20712576 -80667945 + AluSx SINE Alu 1 300 -12 1622 148 0 104 chr15 20712581 20712918 -80667603 + AluJb SINE Alu 1 302 -10 231 250 172 39 chr15 20713216 20713370 -80667151 - L1MC/D LINE L1 -2004 5804 5615 3161 146 31 29 chr15 20713370 20713926 -80666595 - MER41D LTR ERV1 0 557 1 231 250 172 39 chr15 20713926 20713975 -80666546 - L1MC/D LINE L1 -2193 5615 5574 381 58 0 0 chr15 20714281 20714333 -80666188 + (TG)n Simple_repeat Simple_repeat 1 52 0 2676 155 19 25 chr15 20714595 20715079 -80665442 + MER31A LTR ERV1 5 485 0 2399 93 0 0 chr15 20715710 20716011 -80664510 - AluSx SINE Alu -11 301 1 431 78 62 0 chr15 20716089 20716153 -80664368 + Alu SINE Alu 5 72 -237 460 111 12 12 chr15 20716573 20716654 -80663867 + L1MB3 LINE L1 6100 6180 -3 2189 119 3 0 chr15 20716676 20716970 -80663551 - AluSg SINE Alu -15 295 1 2363 107 0 0 chr15 20717474 20717782 -80662739 - AluSx SINE Alu -4 308 1 2466 75 0 10 chr15 20717864 20718169 -80662352 - AluY SINE Alu -9 302 1 2343 104 7 0 chr15 20718332 20718631 -80661890 + AluSx SINE Alu 1 301 -11 1163 228 134 37 chr15 20718632 20718959 -80661562 + MER39 LTR ERV1 19 313 -394 2352 99 0 13 chr15 20718959 20719273 -80661248 + AluSg SINE Alu 1 310 0 1163 228 134 37 chr15 20719273 20719407 -80661114 + MER39 LTR ERV1 313 662 -45 1642 177 7 0 chr15 20719481 20719758 -80660763 - AluSx SINE Alu -16 296 18 3577 194 62 90 chr15 20719821 20720001 -80660520 - LTR49-int LTR ERV1 -3587 1349 1165 2247 113 0 0 chr15 20720001 20720301 -80660220 - AluSx SINE Alu -11 301 2 3577 194 62 90 chr15 20720301 20721062 -80659459 - LTR49-int LTR ERV1 -3771 1165 440 1816 113 4 4 chr15 20721062 20721329 -80659192 + AluSx SINE Alu 44 310 0 3577 194 62 90 chr15 20721329 20721474 -80659047 - LTR49-int LTR ERV1 -4496 440 292 2329 109 3 0 chr15 20721491 20721821 -80658700 + AluSx SINE Alu 1 312 0 355 228 51 112 chr15 20721828 20721899 -80658622 - LTR49-int LTR ERV1 -4661 1670 1596 1934 143 0 3 chr15 20721899 20722185 -80658336 + AluJo SINE Alu 1 285 -27 355 228 51 112 chr15 20722185 20722310 -80658211 - LTR49-int LTR ERV1 -4735 1596 1486 317 226 59 39 chr15 20722311 20722413 -80658108 + U13 snRNA snRNA 1 104 0 208 217 14 58 chr15 20722417 20722486 -80658035 + A-rich Low_complexity Low_complexity 5 70 0 392 182 74 74 chr15 20722487 20722608 -80657913 - LTR49-int LTR ERV1 -4836 1495 1375 2541 59 0 3 chr15 20722779 20723083 -80657438 - AluY SINE Alu -8 303 1 848 231 68 57 chr15 20723426 20723839 -80656682 - MER39 LTR ERV1 -27 650 269 385 283 0 0 chr15 20723823 20723929 -80656592 - MER34 LTR ERV1 -428 114 9 * 276 53 0 0 chr15 20723957 20723995 -80656526 + (CA)n Simple_repeat Simple_repeat 2 39 0 927 230 67 60 chr15 20724821 20725037 -80655484 + MLT1E1 LTR MaLR 54 267 -326 1866 79 0 17 chr15 20725037 20725277 -80655244 + AluY SINE Alu 55 290 -21 927 230 67 60 chr15 20725277 20725430 -80655091 + MLT1E1 LTR MaLR 267 417 -176 1727 190 7 3 chr15 20725430 20725730 -80654791 + AluJb SINE Alu 7 307 -5 927 230 67 60 chr15 20725730 20725859 -80654662 + MLT1E1 LTR MaLR 417 544 -49 1622 191 11 4 chr15 20725859 20726136 -80654385 + AluJo SINE Alu 1 279 -33 2210 137 34 0 chr15 20726136 20726487 -80654034 + THE1B LTR MaLR 2 364 0 927 230 67 60 chr15 20726487 20726521 -80654000 + MLT1E1 LTR MaLR 543 585 -8 215 59 0 29 chr15 20726718 20726752 -80653769 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 2282 86 3 0 chr15 20726862 20727152 -80653369 + AluSc SINE Alu 1 291 -18 2039 93 117 11 chr15 20727300 20727746 -80652775 - LTR14B LTR ERVK 0 608 1 865 264 117 39 chr15 20727866 20728302 -80652219 + LTR41 LTR ERVL 1 470 -303 233 227 0 53 chr15 20728359 20728434 -80652087 + LTR41 LTR ERVL 693 763 -10 282 261 67 52 chr15 20728753 20728887 -80651634 + ERVL LTR ERVL 351 486 -5278 1481 176 14 21 chr15 20729379 20729668 -80650853 + AluJb SINE Alu 12 298 -14 318 177 0 0 chr15 20729672 20729734 -80650787 - L1 LINE L1 -1676 4470 4409 334 232 21 21 chr15 20729867 20729962 -80650559 + ERVL LTR ERVL 1548 1642 -3843 895 260 92 0 chr15 20730033 20730260 -80650261 + MER82 DNA MER2_type 405 652 -1 4983 73 52 9 chr15 20731038 20731698 -80648823 - LTR12 LTR ERV1 0 688 1 198 0 0 0 chr15 20731975 20731997 -80648524 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1748 159 3 20 chr15 20732306 20732607 -80647914 + AluJb SINE Alu 1 296 -16 21 0 0 0 chr15 20732673 20732694 -80647827 + AT_rich Low_complexity Low_complexity 1 21 0 2325 112 0 0 chr15 20732927 20733239 -80647282 + AluSx SINE Alu 1 312 0 1881 100 126 0 chr15 20733249 20733520 -80647001 + AluSx SINE Alu 1 305 -7 1228 127 0 0 chr15 20733520 20733686 -80646835 + AluSg/x SINE Alu 134 299 -13 2120 98 0 4 chr15 20733818 20734093 -80646428 + AluSx SINE Alu 30 303 -9 1172 282 59 16 chr15 20734198 20734914 -80645607 - L1MEc LINE L1 -4837 1276 673 5638 117 6 12 chr15 20734915 20735773 -80644748 + L1PA13 LINE L1 5307 6159 -4 544 228 0 8 chr15 20736021 20736148 -80644373 + AluY SINE Alu 180 305 -6 328 325 26 0 chr15 20736353 20736470 -80644051 + HsTC2 DNA Tc2 35 154 -1744 * 962 238 97 25 chr15 20736468 20736901 -80643620 + HsTC2 DNA Tc2 1234 1873 -25 257 287 56 9 chr15 20736972 20737080 -80643441 - MIR SINE MIR -31 231 119 756 166 30 4 chr15 20737658 20737822 -80642699 - MSTA LTR MaLR -208 167 1 2076 130 7 0 chr15 20737922 20738222 -80642299 + AluSc SINE Alu 1 302 -7 209 33 33 0 chr15 20738300 20738330 -80642191 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 837 181 87 0 chr15 20738337 20738486 -80642035 + AluJo SINE Alu 127 288 -24 23 0 0 0 chr15 20738486 20738509 -80642012 + AT_rich Low_complexity Low_complexity 1 23 0 2585 172 59 12 chr15 20738571 20739077 -80641444 - L1MB3 LINE L1 -2 6181 5652 453 206 18 100 chr15 20739077 20739247 -80641274 - AluSg/x SINE Alu -19 290 135 495 175 0 0 chr15 20739658 20739778 -80640743 + G-rich Low_complexity Low_complexity 1 120 0 1209 228 54 33 chr15 20739933 20740032 -80640489 + MER58B DNA MER1_type 1 96 -2324 2375 97 3 0 chr15 20740032 20740332 -80640189 + AluSx SINE Alu 1 301 -11 1209 228 54 33 chr15 20740332 20740566 -80639955 + MER58B DNA MER1_type 96 341 0 1706 174 14 3 chr15 20740589 20740871 -80639650 - AluSx SINE Alu -27 285 1 1898 146 3 3 chr15 20741005 20741299 -80639222 + AluSx SINE Alu 2 295 -17 2235 102 10 3 chr15 20741851 20742144 -80638377 + AluSg SINE Alu 1 295 -15 1200 143 104 17 chr15 20742499 20742729 -80637792 - MSTA LTR MaLR 0 428 179 2183 127 3 0 chr15 20742861 20743161 -80637360 + AluSq SINE Alu 1 301 -12 1665 197 14 57 chr15 20743207 20743277 -80637244 + MER67A LTR ERV1 1 72 -471 2209 110 3 0 chr15 20743277 20743576 -80636945 + AluSq SINE Alu 2 301 -12 1665 197 14 57 chr15 20743576 20743927 -80636594 + MER67A LTR ERV1 72 404 -139 1803 149 6 19 chr15 20743945 20744261 -80636260 - AluSx SINE Alu 0 312 1 453 158 13 0 chr15 20744263 20744339 -80636182 - FLAM_A SINE Alu -34 108 32 868 182 7 7 chr15 20744366 20744520 -80636001 + MER67A LTR ERV1 390 543 0 1584 119 61 61 chr15 20744751 20744897 -80635624 - AluJb SINE Alu -17 295 147 2158 102 3 33 chr15 20744897 20745202 -80635319 - AluSg SINE Alu -12 298 3 1584 119 61 61 chr15 20745202 20745332 -80635189 - AluJb SINE Alu -164 148 19 24 41 0 20 chr15 20745614 20745651 -80634870 + AT_rich Low_complexity Low_complexity 1 38 -10 1476 117 167 8 chr15 20745651 20745908 -80634613 - AluSc SINE Alu -1 298 1 24 41 0 20 chr15 20745908 20745919 -80634602 + AT_rich Low_complexity Low_complexity 38 48 0 831 244 151 26 chr15 20746510 20746855 -80633666 + L1MC4 LINE L1 6493 6880 -1162 1360 196 109 7 chr15 20746903 20747179 -80633342 + AluJo SINE Alu 1 304 -8 358 175 0 0 chr15 20747179 20747236 -80633285 + L1MA5A LINE L1 6043 6099 -198 3323 137 61 4 chr15 20747271 20747826 -80632695 - L1MA5 LINE L1 -319 5981 5395 439 312 12 0 chr15 20747876 20748046 -80632475 + L1MC4 LINE L1 7454 7625 -417 231 36 0 0 chr15 20748355 20748383 -80632138 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 312 27 0 0 chr15 20748382 20748419 -80632102 + (GA)n Simple_repeat Simple_repeat 2 38 0 858 197 98 38 chr15 20748419 20748602 -80631919 - AluJo SINE Alu -34 278 85 1093 181 236 57 chr15 20748724 20748911 -80631610 + LTR48 LTR ERV1 1 153 -634 2240 106 3 3 chr15 20748911 20749213 -80631308 + AluSg SINE Alu 1 302 -8 1093 181 236 57 chr15 20749213 20749428 -80631093 + LTR48 LTR ERV1 153 475 -312 935 239 63 28 chr15 20749428 20749683 -80630838 + LTR48B LTR ERV1 381 644 0 207 309 147 0 chr15 20749735 20749803 -80630718 - L2 LINE L2 -44 3269 3192 2463 85 0 0 chr15 20750002 20750309 -80630212 - AluSg SINE Alu -3 307 1 1630 242 57 11 chr15 20750309 20750763 -80629758 - L1MC3 LINE L1 -426 7359 6885 646 193 39 8 chr15 20750768 20750915 -80629606 - MSTC LTR MaLR -244 152 1 439 253 0 108 chr15 20751265 20751340 -80629181 + MER54A LTR ERVL 1 83 -818 1942 128 20 14 chr15 20751340 20751636 -80628885 + AluSx SINE Alu 1 298 -14 439 253 0 108 chr15 20751636 20751754 -80628767 + MER54A LTR ERVL 83 173 -728 233 277 24 24 chr15 20751878 20751961 -80628560 - MIR SINE MIR -39 223 141 2218 121 0 7 chr15 20752124 20752431 -80628090 + AluSx SINE Alu 1 305 -7 243 274 154 30 chr15 20752487 20752721 -80627800 - L1 LINE L1 -1125 5021 4759 23 33 0 0 chr15 20753288 20753318 -80627203 + AT_rich Low_complexity Low_complexity 1 30 0 483 163 39 28 chr15 20753395 20753573 -80626948 + (TA)n Simple_repeat Simple_repeat 1 180 0 2501 34 7 10 chr15 20753654 20753951 -80626570 + AluY SINE Alu 2 297 -14 2287 116 160 2 chr15 20753951 20754357 -80626164 - MER31A LTR ERV1 -15 470 1 628 195 122 12 chr15 20754885 20755049 -80625472 - MER5A DNA MER1_type 0 189 8 2167 102 0 41 chr15 20756420 20756735 -80623786 + AluSq SINE Alu 1 302 -11 243 271 59 12 chr15 20756740 20756825 -80623696 - MIR SINE MIR -146 116 28 308 294 92 8 chr15 20757152 20757271 -80623250 - L1ME3A LINE L1 -260 5910 5782 2195 124 0 13 chr15 20757394 20757709 -80622812 - AluSx SINE Alu -1 311 1 334 369 0 0 chr15 20757713 20757862 -80622659 - L1ME3A LINE L1 -402 5768 5620 1053 268 119 28 chr15 20757868 20758338 -80622183 + L1ME3A LINE L1 5528 6040 -130 321 26 0 0 chr15 20758380 20758418 -80622103 + (TG)n Simple_repeat Simple_repeat 2 39 0 437 49 16 0 chr15 20758427 20758488 -80622033 - AluY SINE Alu -5 306 245 400 192 51 0 chr15 20758484 20758562 -80621959 - AluSq/x SINE Alu -167 145 64 * 506 278 87 80 chr15 20758574 20759088 -80621433 - LTR48B LTR ERV1 0 633 20 1066 175 10 35 chr15 20759089 20759289 -80621232 - AluJb SINE Alu -115 197 3 861 143 32 0 chr15 20759834 20759960 -80620561 + FLAM_C SINE Alu 1 130 -3 1117 185 138 31 chr15 20760126 20760248 -80620273 - AluJo SINE Alu -31 281 173 2259 69 24 0 chr15 20760248 20760536 -80619985 - AluY SINE Alu -16 295 1 1117 185 138 31 chr15 20760536 20760667 -80619854 - AluJo SINE Alu -139 173 1 33 43 0 0 chr15 20760754 20760801 -80619720 + AT_rich Low_complexity Low_complexity 1 47 0 404 248 64 40 chr15 20760869 20760994 -80619527 - MER94 DNA DNA -5 129 2 287 183 139 52 chr15 20761176 20761228 -80619293 - L1MC4 LINE L1 0 8042 7996 1684 166 0 45 chr15 20761228 20761536 -80618985 + AluJo SINE Alu 4 297 -15 287 183 139 52 chr15 20761536 20761598 -80618923 - L1MC4 LINE L1 -46 7996 7918 1712 201 0 3 chr15 20761626 20761924 -80618597 - AluJo SINE Alu -15 297 1 345 24 0 0 chr15 20761979 20762021 -80618500 + (T)n Simple_repeat Simple_repeat 1 42 0 992 183 17 74 chr15 20763416 20763497 -80617024 - AluSx SINE Alu -95 217 133 2214 84 3 7 chr15 20763497 20763809 -80616712 - AluSx SINE Alu 0 311 1 992 183 17 74 chr15 20763809 20763956 -80616565 - AluSx SINE Alu -179 133 1 1935 228 52 21 chr15 20763962 20764485 -80616036 - MER74B LTR ERVL -82 540 2 2434 170 38 57 chr15 20764488 20764800 -80615721 - L1M3 LINE L1 -560 5623 5307 192 97 0 0 chr15 20764800 20764831 -80615690 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1942 147 7 0 chr15 20764831 20765112 -80615409 - AluSx SINE Alu -29 283 1 2434 170 38 57 chr15 20765112 20765163 -80615358 - L1M3 LINE L1 -875 5308 5258 2018 166 0 0 chr15 20765163 20765470 -80615051 - AluSx SINE Alu -5 307 1 2434 170 38 57 chr15 20765470 20765943 -80614578 - L1M3 LINE L1 -925 5258 4793 240 59 0 0 chr15 20766129 20766163 -80614358 + (TG)n Simple_repeat Simple_repeat 1 34 0 872 196 6 30 chr15 20766185 20766353 -80614168 - MLT2D LTR ERVL -54 360 197 2145 123 20 0 chr15 20766354 20766656 -80613865 - AluSx SINE Alu -4 308 1 12637 184 39 20 chr15 20766657 20767138 -80613383 - ERVL LTR ERVL -303 5461 4991 2147 113 0 3 chr15 20767138 20767457 -80613064 - AluSg SINE Alu 0 310 1 12637 184 39 20 chr15 20767457 20769190 -80611331 - ERVL LTR ERVL -773 4991 3198 2176 135 0 6 chr15 20769190 20769501 -80611020 - AluSx SINE Alu -3 309 1 12637 184 39 20 chr15 20769501 20769626 -80610895 - ERVL LTR ERVL -2566 3198 3077 555 258 67 16 chr15 20769610 20769804 -80610717 - ERVL LTR ERVL -5345 419 216 * 841 107 90 0 chr15 20769806 20769928 -80610593 + AluSq/x SINE Alu 1 133 -179 282 264 86 71 chr15 20769939 20770079 -80610442 - ERVL LTR ERVL -5621 143 2 1918 179 42 32 chr15 20770087 20770490 -80610031 - MLT2D LTR ERVL -7 407 1 955 203 81 0 chr15 20770490 20770687 -80609834 - MER58B DNA MER1_type -29 312 100 216 0 0 0 chr15 20770723 20770747 -80609774 + (A)n Simple_repeat Simple_repeat 1 24 0 874 171 7 13 chr15 20770792 20770944 -80609577 + FAM SINE Alu 20 170 -15 480 270 20 7 chr15 20771489 20771641 -80608880 + MIR SINE MIR 2 155 -107 1042 175 0 0 chr15 20771642 20771808 -80608713 + AluJb SINE Alu 137 302 -10 1607 199 3 27 chr15 20771836 20772137 -80608384 - AluJo SINE Alu -5 307 14 32 26 0 0 chr15 20772156 20772195 -80608326 + AT_rich Low_complexity Low_complexity 1 39 0 214 235 59 0 chr15 20772225 20772276 -80608245 + MIR SINE MIR 184 237 -25 2263 114 3 0 chr15 20772730 20773036 -80607485 + AluSg SINE Alu 1 307 -3 725 35 0 0 chr15 20773328 20773414 -80607107 - L1PA3 LINE L1 0 6155 6070 207 0 0 0 chr15 20773481 20773504 -80607017 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2167 101 0 11 chr15 20773507 20773793 -80606728 - AluSc SINE Alu -26 283 1 1470 183 101 6 chr15 20773793 20774131 -80606390 - L1MC3 LINE L1 -23 7762 7393 * 3349 166 50 100 chr15 20774128 20774393 -80606128 - L1MB7 LINE L1 0 6184 5907 2452 100 0 0 chr15 20774393 20774704 -80605817 - AluSx SINE Alu -1 311 1 3349 166 50 100 chr15 20774704 20774751 -80605770 - L1MB7 LINE L1 -277 5907 5859 1719 189 0 3 chr15 20774751 20775052 -80605469 + AluJo SINE Alu 2 301 -11 3349 166 50 100 chr15 20775052 20775198 -80605323 - L1MB7 LINE L1 -325 5859 5707 1512 199 46 26 chr15 20775198 20775504 -80605017 - AluJo SINE Alu 0 312 1 3349 166 50 100 chr15 20775504 20775564 -80604957 - L1MB7 LINE L1 -477 5707 5646 2255 95 0 0 chr15 20775564 20775849 -80604672 - AluSg SINE Alu -17 293 9 3349 166 50 100 chr15 20775849 20775923 -80604598 - L1MB7 LINE L1 -538 5646 5570 1742 163 16 10 chr15 20775923 20776230 -80604291 - AluJo SINE Alu -3 309 1 1868 130 13 23 chr15 20776236 20776544 -80603977 - AluSx SINE Alu -7 305 1 3349 166 50 100 chr15 20776544 20776895 -80603626 - L1MB7 LINE L1 -619 5565 5297 2041 146 7 0 chr15 20776895 20777189 -80603332 - AluSx SINE Alu -16 296 1 3349 166 50 100 chr15 20777189 20777418 -80603103 - L1MB7 LINE L1 -887 5297 5058 304 231 27 7 chr15 20777418 20777565 -80602956 + (TA)n Simple_repeat Simple_repeat 2 151 0 273 133 0 0 chr15 20777593 20777638 -80602883 - L1MB7 LINE L1 -1144 5002 4958 29 28 0 0 chr15 20778103 20778139 -80602382 + AT_rich Low_complexity Low_complexity 1 36 0 322 254 97 6 chr15 20778177 20778342 -80602179 + L1MC3 LINE L1 7444 7623 -162 477 276 91 25 chr15 20778409 20778652 -80601869 - MIR SINE MIR -2 260 2 2232 110 3 0 chr15 20778703 20779002 -80601519 - AluSc SINE Alu -9 300 1 329 187 13 27 chr15 20779075 20779150 -80601371 - MER116 DNA Mariner -6 74 1 2429 91 0 0 chr15 20783253 20783550 -80596971 - AluSq SINE Alu -16 297 1 346 356 169 12 chr15 20784241 20784727 -80595794 + L2 LINE L2 2007 2568 -746 1403 278 109 42 chr15 20787106 20787989 -80592532 + L1MC4 LINE L1 7103 8036 -6 314 238 112 93 chr15 20788200 20788242 -80592279 + L1MC/D LINE L1 5437 5477 -2331 2267 95 10 3 chr15 20788242 20788536 -80591985 - AluSx SINE Alu -16 296 1 314 238 112 93 chr15 20788536 20788707 -80591814 + L1MC/D LINE L1 5477 5654 -2154 765 247 12 18 chr15 20789356 20789526 -80590995 + MER58A DNA MER1_type 1 169 -55 1964 144 7 0 chr15 20794108 20794393 -80586128 - AluSg SINE Alu -23 287 1 2083 147 0 3 chr15 20795554 20795861 -80584660 - AluSx SINE Alu -6 306 1 518 300 29 40 chr15 20796407 20796680 -80583841 - L1MC/D LINE L1 -2204 5604 5335 802 112 19 0 chr15 20797857 20797964 -80582557 - BC200 scRNA scRNA -80 120 12 1815 161 0 7 chr15 20798423 20798708 -80581813 + AluSx SINE Alu 11 293 -19 22 0 0 54 chr15 20798748 20798766 -80581755 + AT_rich Low_complexity Low_complexity 1 18 -17 2111 132 6 0 chr15 20798766 20799077 -80581444 + AluSp SINE Alu 1 313 0 22 0 0 54 chr15 20799077 20799095 -80581426 + AT_rich Low_complexity Low_complexity 18 35 0 1707 163 10 24 chr15 20799102 20799397 -80581124 + AluSx SINE Alu 3 293 -19 280 196 103 10 chr15 20799636 20799733 -80580788 + L1MC5 LINE L1 6970 7075 -886 21 57 0 0 chr15 20800052 20800087 -80580434 + AT_rich Low_complexity Low_complexity 1 35 0 1080 234 108 7 chr15 20801188 20801457 -80579064 - AluJo SINE Alu -6 296 1 362 234 54 18 chr15 20801737 20801848 -80578673 + L1MB4 LINE L1 5587 5701 -479 997 248 129 3 chr15 20802017 20802388 -80578133 + L1MB4 LINE L1 5762 6179 -1 1291 216 40 7 chr15 20802467 20802768 -80577753 + AluJo SINE Alu 1 311 -1 1077 238 65 63 chr15 20802768 20803142 -80577379 + L1M4c LINE L1 7 384 -6000 3852 199 74 43 chr15 20803161 20804060 -80576461 + L1M4c LINE L1 920 1790 -4594 1463 205 0 33 chr15 20804060 20804363 -80576158 - AluJo SINE Alu -19 293 1 3852 199 74 43 chr15 20804363 20804520 -80576001 + L1M4c LINE L1 1790 1941 -4443 2322 74 0 3 chr15 20804520 20804805 -80575716 + AluY SINE Alu 1 284 -27 3852 199 74 43 chr15 20804805 20804904 -80575617 + L1M4c LINE L1 1941 2112 -4272 517 265 76 0 chr15 20804915 20805138 -80575383 + L1M4c LINE L1 2580 2819 -3563 362 118 0 5 chr15 20805140 20805205 -80575316 + Alu SINE Alu 1 46 -256 1306 107 0 0 chr15 20805206 20805374 -80575147 + AluSg/x SINE Alu 132 299 -11 871 245 21 93 chr15 20805374 20805741 -80574780 - MLT1A1 LTR MaLR -33 424 1 4768 213 21 77 chr15 20805764 20806038 -80574483 - MLT1A1-int LTR MaLR -20 1715 1427 683 186 59 0 chr15 20806038 20806156 -80574365 + FLAM_A SINE Alu 1 125 -8 4768 213 21 77 chr15 20806156 20807135 -80573386 - MLT1A1-int LTR MaLR -308 1427 532 217 152 22 0 chr15 20807494 20807520 -80573001 + (TAA)n Simple_repeat Simple_repeat 3 32 -17 2195 88 0 11 chr15 20807520 20807805 -80572716 + AluSg SINE Alu 1 282 -28 217 152 22 0 chr15 20807805 20807824 -80572697 + (TAA)n Simple_repeat Simple_repeat 32 49 0 962 146 53 0 chr15 20807829 20807980 -80572541 - FRAM SINE Alu -21 155 1 986 198 53 5 chr15 20807980 20808167 -80572354 - MLT1A1-int LTR MaLR -1192 543 348 321 319 64 29 chr15 20808167 20808371 -80572150 + PABL_B LTR ERV1 1 211 -456 758 207 38 55 chr15 20809462 20809699 -80570822 + PABL_B LTR ERV1 369 601 -66 1992 153 38 3 chr15 20809718 20810059 -80570462 - MLT1A1-int LTR MaLR -1382 353 1 549 197 21 42 chr15 20810059 20810201 -80570320 - MLT1A1 LTR MaLR 0 365 227 2371 110 0 0 chr15 20810226 20810536 -80569985 - AluSg SINE Alu 0 310 1 775 111 0 0 chr15 20810564 20810663 -80569858 + AluJ/FLAM SINE Alu 2 100 -212 2527 60 0 3 chr15 20810695 20810993 -80569528 - AluY SINE Alu -14 297 1 679 228 98 23 chr15 20811058 20811273 -80569248 + PABL_B-int LTR ERV1 201 431 -4505 531 187 123 68 chr15 20811266 20811485 -80569036 + PABL_B-int LTR ERV1 546 776 -4160 * 1267 225 129 42 chr15 20811667 20811876 -80568645 + MER39 LTR ERV1 288 477 -230 1733 160 3 31 chr15 20811876 20812194 -80568327 + AluJb SINE Alu 1 309 -3 1267 225 129 42 chr15 20812194 20812370 -80568151 + MER39 LTR ERV1 477 707 0 327 253 0 0 chr15 20812398 20812477 -80568044 + LTR12-int LTR ERV1 3852 3930 -941 * 1217 184 43 71 chr15 20812451 20812777 -80567744 + LTR12-int LTR ERV1 4565 4881 -55 2203 108 0 0 chr15 20812783 20813078 -80567443 - AluSg SINE Alu -15 295 1 1240 116 0 12 chr15 20813169 20813342 -80567179 - AluSg/x SINE Alu -8 304 134 1872 100 126 0 chr15 20813342 20813613 -80566908 - AluSx SINE Alu -7 305 1 1085 173 42 35 chr15 20813623 20813883 -80566638 - AluSx SINE Alu 0 312 51 1566 118 122 4 chr15 20814688 20814943 -80565578 + LTR12 LTR ERV1 1 285 -429 247 280 13 0 chr15 20814946 20815021 -80565500 + LTR30 LTR ERV1 548 623 -99 656 125 22 125 chr15 20815022 20815158 -80565363 + LTR12 LTR ERV1 359 480 -234 884 206 18 6 chr15 20815318 20815483 -80565038 - AluJb SINE Alu -4 308 142 255 161 0 0 chr15 20815499 20815555 -80564966 + (TCTCTG)n Simple_repeat Simple_repeat 3 58 0 2194 93 38 3 chr15 20815637 20815928 -80564593 + AluSg SINE Alu 1 301 -9 2463 141 43 56 chr15 20816354 20816471 -80564050 + MER31A LTR ERV1 1 118 -367 2261 96 0 7 chr15 20816471 20816784 -80563737 + AluSg SINE Alu 1 310 0 2463 141 43 56 chr15 20816784 20817150 -80563371 + MER31A LTR ERV1 118 478 -7 515 274 20 26 chr15 20817172 20817325 -80563196 + MER31A-int LTR ERV1 15 166 -4770 791 124 20 92 chr15 20817329 20817482 -80563039 - FLAM_C SINE Alu 0 143 2 366 241 71 27 chr15 20817529 20817641 -80562880 + MER31A-int LTR ERV1 172 288 -4648 3135 159 32 32 chr15 20817641 20818206 -80562315 + MER34B LTR ERV1 1 565 0 2074 122 0 17 chr15 20818209 20818535 -80561986 - AluSx SINE Alu 0 312 1 939 232 22 130 chr15 20818615 20818656 -80561865 - MLT1A1 LTR MaLR 0 365 321 2146 123 3 0 chr15 20818656 20818956 -80561565 + AluSx SINE Alu 1 301 -11 939 232 22 130 chr15 20818956 20819323 -80561198 - MLT1A1 LTR MaLR -44 321 1 4781 214 24 76 chr15 20819346 20819620 -80560901 - MLT1A1-int LTR MaLR -20 1715 1428 683 186 59 0 chr15 20819620 20819738 -80560783 + FLAM_A SINE Alu 1 125 -8 4781 214 24 76 chr15 20819738 20820733 -80559788 - MLT1A1-int LTR MaLR -307 1428 512 217 152 22 0 chr15 20821076 20821102 -80559419 + (TAA)n Simple_repeat Simple_repeat 3 32 -17 2182 91 0 11 chr15 20821102 20821387 -80559134 + AluSg SINE Alu 1 282 -28 217 152 22 0 chr15 20821387 20821406 -80559115 + (TAA)n Simple_repeat Simple_repeat 32 49 0 962 146 53 0 chr15 20821411 20821562 -80558959 - FRAM SINE Alu -21 155 1 986 198 53 5 chr15 20821562 20821749 -80558772 - MLT1A1-int LTR MaLR -1192 543 348 321 319 64 29 chr15 20821749 20821953 -80558568 + PABL_B LTR ERV1 1 211 -456 773 203 38 55 chr15 20823041 20823278 -80557243 + PABL_B LTR ERV1 369 601 -66 1992 153 38 3 chr15 20823302 20823643 -80556878 - MLT1A1-int LTR MaLR -1382 353 1 549 197 21 42 chr15 20823643 20823785 -80556736 - MLT1A1 LTR MaLR 0 365 227 2193 112 0 0 chr15 20823833 20824119 -80556402 - AluSg SINE Alu -24 286 1 775 111 0 0 chr15 20824147 20824246 -80556275 + AluJ/FLAM SINE Alu 2 100 -212 2437 67 3 3 chr15 20824278 20824575 -80555946 - AluY SINE Alu -14 297 1 679 228 98 23 chr15 20824640 20824855 -80555666 + MER31A-int LTR ERV1 201 431 -4505 500 192 123 68 chr15 20824848 20825067 -80555454 + MER31A-int LTR ERV1 546 776 -4160 * 1283 223 129 42 chr15 20825249 20825458 -80555063 + MER39 LTR ERV1 288 477 -230 1733 160 3 31 chr15 20825458 20825776 -80554745 + AluJb SINE Alu 1 309 -3 1283 223 129 42 chr15 20825776 20825952 -80554569 + MER39 LTR ERV1 477 707 0 327 253 0 0 chr15 20825980 20826059 -80554462 + LTR48-int LTR ERV1 3852 3930 -941 * 1217 184 43 71 chr15 20826033 20826359 -80554162 + LTR48-int LTR ERV1 4565 4881 -55 2222 108 0 0 chr15 20826365 20826662 -80553859 - AluSg SINE Alu -13 297 1 897 106 0 15 chr15 20826753 20826885 -80553636 - AluSg/x SINE Alu -7 303 174 186 0 28 56 chr15 20828062 20828098 -80552423 + (TA)n Simple_repeat Simple_repeat 2 36 0 1137 112 12 0 chr15 20828101 20828262 -80552259 - AluSg/x SINE Alu -13 297 135 252 0 0 0 chr15 20828262 20828290 -80552231 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 420 20 0 0 chr15 20828289 20828338 -80552183 + (GA)n Simple_repeat Simple_repeat 2 50 0 831 202 98 38 chr15 20828338 20828521 -80552000 - AluJo SINE Alu -34 278 85 1189 178 230 57 chr15 20828643 20828832 -80551689 + LTR48 LTR ERV1 1 156 -631 2269 109 0 0 chr15 20828832 20829134 -80551387 + AluSg SINE Alu 1 302 -8 1189 178 230 57 chr15 20829134 20829349 -80551172 + LTR48 LTR ERV1 156 475 -312 904 247 63 28 chr15 20829349 20829604 -80550917 + LTR48B LTR ERV1 381 644 0 216 309 147 0 chr15 20829656 20829724 -80550797 - L2 LINE L2 -44 3269 3192 2576 39 3 7 chr15 20829923 20830232 -80550289 - AluY SINE Alu -3 308 1 269 210 16 0 chr15 20830384 20830446 -80550075 - LTR30 LTR ERV1 -104 618 556 410 172 49 93 chr15 20830446 20830640 -80549881 - LTR12 LTR ERV1 -425 289 44 241 163 0 0 chr15 20830640 20830683 -80549838 - LTR30 LTR ERV1 -679 43 1 3311 205 35 42 chr15 20830683 20831662 -80548859 + L1MA8 LINE L1 2235 6313 -47 2056 270 45 26 chr15 20831731 20832600 -80547921 + L1MEc LINE L1 2317 3201 -3014 629 206 0 0 chr15 20834325 20834432 -80546089 - FAM SINE Alu -21 164 58 889 77 0 0 chr15 20834480 20834597 -80545924 - AluY SINE Alu 0 311 195 528 159 86 73 chr15 20834691 20834842 -80545679 + HsTC2 DNA Tc2 1238 1566 -332 2409 197 36 60 chr15 20835036 20835174 -80545347 + MER7C DNA MER2_type 3 143 -2885 2353 95 0 0 chr15 20835174 20835469 -80545052 - AluSg SINE Alu -15 295 1 2409 197 36 60 chr15 20835469 20835516 -80545005 + MER7C DNA MER2_type 143 190 -2838 2435 65 0 7 chr15 20835516 20835822 -80544699 - AluY SINE Alu -7 304 1 2409 197 36 60 chr15 20835822 20836249 -80544272 + MER7C DNA MER2_type 190 601 -1 302 333 30 0 chr15 20836560 20836725 -80543796 + L1MEc LINE L1 90 259 -6137 1762 166 14 0 chr15 20837172 20837468 -80543053 + MER47A DNA MER2_type 23 322 -44 311 144 0 178 chr15 20837469 20837559 -80542962 + Tigger5 DNA MER2_type 2248 2323 0 241 289 70 30 chr15 20839968 20840169 -80540352 + L1M4 LINE L1 4889 5097 -1049 191 370 10 10 chr15 20840290 20840390 -80540131 + MIR SINE MIR 141 240 -22 266 315 80 24 chr15 20840443 20840656 -80539865 - HsTC2 DNA Tc2 -20 1878 1654 2435 67 0 10 chr15 20840660 20840958 -80539563 + AluY SINE Alu 6 300 -11 1375 133 0 0 chr15 20840959 20841147 -80539374 + AluSg/x SINE Alu 113 300 -12 504 258 102 27 chr15 20841156 20841381 -80539140 - HsTC2 DNA Tc2 -246 1652 1235 2256 211 33 7 chr15 20841473 20841894 -80538627 - MSTB1 LTR MaLR 0 432 1 1376 200 28 39 chr15 20842034 20842319 -80538202 - AluJo SINE Alu -30 282 1 2054 94 63 23 chr15 20842346 20842645 -80537876 - AluSp SINE Alu -2 311 1 3208 239 97 3 chr15 20842769 20843533 -80536988 - MER54A LTR ERVL -7 894 59 2301 101 3 0 chr15 20844011 20844309 -80536212 - AluSp SINE Alu -14 299 1 2304 95 0 25 chr15 20845087 20845404 -80535117 - AluSc SINE Alu 0 309 1 2104 176 72 17 chr15 20846271 20846675 -80533846 - MSTB LTR MaLR 0 426 1 685 48 0 0 chr15 20846698 20846782 -80533739 - MSTB LTR MaLR -342 84 1 2817 221 12 12 chr15 20847284 20847325 -80533196 + L1MA7 LINE L1 5270 5310 -981 2239 93 27 0 chr15 20847325 20847625 -80532896 + AluSx SINE Alu 1 308 -4 1633 194 11 0 chr15 20847635 20847919 -80532602 + AluJo SINE Alu 1 287 -25 2817 221 12 12 chr15 20847919 20848535 -80531986 + L1MA7 LINE L1 5318 5938 -353 366 342 76 11 chr15 20848539 20848723 -80531798 + MLT1E LTR MaLR 68 263 -330 701 185 15 0 chr15 20848786 20848921 -80531600 - L1MCa LINE L1 -4210 2216 2080 246 226 0 0 chr15 20848966 20849019 -80531502 - L1MCa LINE L1 -4300 2126 2074 233 310 69 45 chr15 20849234 20849524 -80530997 + L2 LINE L2 2914 3210 -62 551 231 111 53 chr15 20850044 20850269 -80530252 + HsTC2 DNA Tc2 1239 1652 -246 488 329 78 13 chr15 20850648 20850879 -80529642 + L1MEc LINE L1 62 307 -6089 216 0 0 0 chr15 20851118 20851142 -80529379 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1970 141 3 0 chr15 20851215 20851498 -80529023 - AluSg SINE Alu -25 285 2 888 148 8 0 chr15 20851502 20851630 -80528891 - AluSq/x SINE Alu -179 133 5 4315 135 0 5 chr15 20852263 20852892 -80527629 - L1PA15 LINE L1 -7 6158 5533 4202 245 41 38 chr15 20852895 20854242 -80526279 - L1PA13 LINE L1 -5378 1409 1 198 0 0 0 chr15 20855975 20855997 -80524524 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 383 280 84 84 chr15 20856128 20856374 -80524147 + L1M4 LINE L1 4754 5002 -1144 2000 125 18 0 chr15 20856374 20856653 -80523868 - AluSg SINE Alu -26 284 1 383 280 84 84 chr15 20856653 20856749 -80523772 + L1M4 LINE L1 5001 5096 -1050 358 290 172 11 chr15 20856784 20856970 -80523551 + MIR SINE MIR 7 222 -40 346 168 106 9 chr15 20857032 20857145 -80523376 - HsTC2 DNA Tc2 -16 1882 1759 902 123 71 0 chr15 20857170 20857325 -80523196 + L1M2 LINE L1 5508 5673 -618 744 278 68 23 chr15 20857327 20857636 -80522885 - HsTC2 DNA Tc2 -173 1725 1227 835 224 0 0 chr15 20857998 20858173 -80522348 + AluJb SINE Alu 132 306 0 601 199 72 48 chr15 20859479 20859645 -80520876 + L1MC3 LINE L1 4616 4785 -1361 553 303 116 26 chr15 20859659 20860060 -80520461 + MER52A LTR ERV1 29 643 -635 2225 139 88 25 chr15 20860060 20860456 -80520065 + LTR12 LTR ERV1 43 463 -251 1050 296 6 66 chr15 20860456 20860973 -80519548 + MER52A LTR ERV1 464 949 -806 345 244 22 0 chr15 20860978 20861068 -80519453 + MER52A LTR ERV1 1094 1185 -570 1682 230 6 11 chr15 20861091 20861439 -80519082 + MER52A LTR ERV1 1410 1755 0 1438 252 68 18 chr15 20861439 20862078 -80518443 + L1MC3 LINE L1 4782 5452 -722 2138 133 7 0 chr15 20862079 20862381 -80518140 + AluSx SINE Alu 1 304 -8 5631 230 77 40 chr15 20862394 20864093 -80516428 + L1MC3 LINE L1 5858 7632 -153 2087 117 0 3 chr15 20864093 20864425 -80516096 + AluSx SINE Alu 1 331 0 5631 230 77 40 chr15 20864425 20864579 -80515942 + L1MC3 LINE L1 7632 7779 -6 509 248 165 0 chr15 20865016 20865149 -80515372 + MER41E LTR ERV1 23 177 -335 362 193 118 8 chr15 20865154 20865173 -80515348 - L1MCa LINE L1 -4374 2052 2036 183 42 0 0 chr15 20865173 20865197 -80515324 + (CA)n Simple_repeat Simple_repeat 2 25 0 362 193 118 8 chr15 20865197 20865296 -80515225 - L1MCa LINE L1 -4390 2036 1921 1401 138 45 20 chr15 20865296 20865547 -80514974 + L1MEc LINE L1 2210 2383 -4043 1566 187 18 0 chr15 20865547 20865856 -80514665 + AluSx SINE Alu 1 314 0 1401 138 45 20 chr15 20865856 20865949 -80514572 + L1MEc LINE L1 2383 2472 -3954 249 216 0 0 chr15 20865936 20865987 -80514534 + L1ME LINE L1 5410 5460 -706 * 441 193 59 8 chr15 20865985 20866104 -80514417 + L1MA8 LINE L1 6163 6287 -4 1111 108 0 7 chr15 20866160 20866308 -80514213 + AluSg/x SINE Alu 70 216 -94 1818 279 27 43 chr15 20866309 20866676 -80513845 + L1M4 LINE L1 2304 2675 -3471 2931 82 3 0 chr15 20866676 20867030 -80513491 - THE1A LTR MaLR 0 355 1 1818 279 27 43 chr15 20867030 20867398 -80513123 + L1M4 LINE L1 2675 3027 -3119 2306 62 41 0 chr15 20867398 20867690 -80512831 + AluSg SINE Alu 3 306 -4 1818 279 27 43 chr15 20867690 20867795 -80512726 + L1M4 LINE L1 3027 3132 -3014 2352 84 0 10 chr15 20868629 20868940 -80511581 - AluY SINE Alu -2 309 2 349 206 113 64 chr15 20869933 20870074 -80510447 + HsTC2 DNA Tc2 1231 1554 -344 2292 75 7 0 chr15 20870086 20870366 -80510155 - AluSg SINE Alu -28 282 1 2511 170 38 71 chr15 20870604 20870722 -80509799 + MER7C DNA MER2_type 13 133 -2895 1845 153 0 59 chr15 20870722 20871042 -80509479 - AluSx SINE Alu -11 301 1 2511 170 38 71 chr15 20871042 20871231 -80509290 + MER7C DNA MER2_type 133 327 -2701 2345 84 3 0 chr15 20871231 20871527 -80508994 - AluSp SINE Alu -16 297 1 2511 170 38 71 chr15 20871527 20871825 -80508696 + MER7C DNA MER2_type 327 602 0 2365 95 0 0 chr15 20872089 20872383 -80508138 - AluSc SINE Alu -15 294 1 513 268 14 0 chr15 20872440 20872578 -80507943 + L1MEc LINE L1 100 239 -6157 1704 211 28 11 chr15 20872933 20873289 -80507232 + MER47A DNA MER2_type 4 365 -1 1533 201 3 13 chr15 20873304 20873602 -80506919 - AluJo SINE Alu -17 295 1 22 80 0 0 chr15 20875092 20875142 -80505379 + AT_rich Low_complexity Low_complexity 1 50 0 251 267 61 61 chr15 20875383 20875514 -80505007 + MIR SINE MIR 96 226 -36 1040 244 87 31 chr15 20875589 20876047 -80504474 - HsTC2 DNA Tc2 -23 1875 1216 548 263 10 57 chr15 20877148 20877342 -80503179 + MIR3 SINE MIR 15 199 -9 695 239 184 76 chr15 20878478 20878939 -80501582 + MLT2B1 LTR ERVL 2 512 -8 417 123 99 12 chr15 20879151 20879232 -80501289 - MER20B DNA MER1_type -71 712 625 2847 168 238 18 chr15 20879340 20880053 -80500468 + MER52C LTR ERV1 409 1278 0 1356 204 41 44 chr15 20880231 20880618 -80499903 + L1MC4a LINE L1 5288 5680 -688 208 256 26 64 chr15 20881051 20881129 -80499392 - MER5A DNA MER1_type -6 183 109 1948 129 48 3 chr15 20881653 20881963 -80498558 - L1MA6 LINE L1 0 6300 5977 225 94 0 0 chr15 20881967 20881999 -80498522 + (T)n Simple_repeat Simple_repeat 1 32 0 5626 48 5 1 chr15 20883513 20884166 -80496355 + L1PA5 LINE L1 5500 6154 0 338 285 64 121 chr15 20884865 20885114 -80495407 - L2 LINE L2 -6 3266 3032 283 281 0 0 chr15 20885131 20885195 -80495326 + L2 LINE L2 3201 3264 -8 25 0 0 0 chr15 20885310 20885335 -80495186 + AT_rich Low_complexity Low_complexity 1 25 0 1182 165 89 8 chr15 20885784 20886020 -80494501 - AluJb SINE Alu -18 294 40 756 190 69 6 chr15 20886038 20886212 -80494309 - L1M4 LINE L1 -733 5441 5257 383 257 16 82 chr15 20886223 20886406 -80494115 - L1MA10 LINE L1 -7 6327 6157 398 254 127 5 chr15 20886412 20886609 -80493912 - L1M4 LINE L1 -870 5276 5056 1698 176 28 3 chr15 20887505 20887795 -80492726 - AluJo SINE Alu -15 297 1 21 36 0 0 chr15 20887872 20887900 -80492621 + AT_rich Low_complexity Low_complexity 1 28 0 2307 113 0 0 chr15 20887916 20888217 -80492304 - AluSg SINE Alu -9 301 1 327 268 113 12 chr15 20888248 20888416 -80492105 + L1MC4a LINE L1 5706 5890 -1918 21 36 0 0 chr15 20888617 20888645 -80491876 + AT_rich Low_complexity Low_complexity 1 28 0 484 141 0 81 chr15 20891268 20891367 -80489154 - FLAM_A SINE Alu -12 130 40 1514 193 10 3 chr15 20891485 20891780 -80488741 - AluJo SINE Alu -15 297 1 677 153 85 25 chr15 20892107 20892225 -80488296 + FLAM_C SINE Alu 1 125 -18 839 143 54 0 chr15 20892451 20892598 -80487923 - L1MB7 LINE L1 -334 5850 5696 1231 113 0 0 chr15 20892747 20892907 -80487614 + AluSx SINE Alu 3 162 -150 2070 116 0 7 chr15 20893054 20893339 -80487182 - AluSx SINE Alu -29 283 1 770 202 104 22 chr15 20893349 20893532 -80486989 + Tigger3(Golem) DNA MER2_type 2821 3018 -11 2198 91 0 39 chr15 20893543 20893850 -80486671 - AluSq SINE Alu -18 295 1 786 102 68 0 chr15 20894768 20894886 -80485635 - AluSx SINE Alu -9 303 178 848 117 0 39 chr15 20894886 20895014 -80485507 - AluSx SINE Alu -189 123 1 450 248 44 9 chr15 20895248 20895361 -80485160 + MER106A DNA MER1_type 1 117 -119 1993 115 17 3 chr15 20897508 20897796 -80482725 + AluSq SINE Alu 1 292 -21 1848 122 83 17 chr15 20898884 20899172 -80481349 - AluSp SINE Alu -6 307 1 2054 130 10 0 chr15 20899832 20900132 -80480389 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr15 20900140 20900161 -80480360 + AT_rich Low_complexity Low_complexity 1 21 0 785 285 112 82 chr15 20900631 20901302 -80479219 - MER21B LTR ERV1 -149 714 24 2199 100 0 7 chr15 20901936 20902235 -80478286 + AluSx SINE Alu 3 299 -13 1089 165 0 0 chr15 20902235 20902405 -80478116 + AluSg/x SINE Alu 134 303 -9 26 0 0 0 chr15 20902896 20902922 -80477599 + AT_rich Low_complexity Low_complexity 1 26 0 2117 116 3 0 chr15 20903711 20904005 -80476516 - AluSq SINE Alu -18 295 1 649 259 27 22 chr15 20904389 20904574 -80475947 + MER58A DNA MER1_type 33 218 -6 1943 131 3 3 chr15 20904874 20905165 -80475356 + AluSx SINE Alu 1 291 -21 36 23 0 0 chr15 20906099 20906142 -80474379 + AT_rich Low_complexity Low_complexity 1 43 0 686 96 113 17 chr15 20906198 20906313 -80474208 - MER85 DNA T2_type -13 126 1 501 275 10 28 chr15 20906313 20906500 -80474021 - L1MB7 LINE L1 -3 6181 5994 2159 117 0 0 chr15 20906551 20906849 -80473672 + AluSx SINE Alu 1 298 -14 1533 221 45 40 chr15 20906980 20907406 -80473115 + MLT1C LTR MaLR 40 467 0 1456 228 115 54 chr15 20907410 20907752 -80472769 + L1MEc LINE L1 2146 2466 -3749 2139 103 0 7 chr15 20907752 20908044 -80472477 + AluSg1 SINE Alu 3 292 -17 1456 228 115 54 chr15 20908044 20908197 -80472324 + L1MEc LINE L1 2466 2608 -3607 14331 44 7 2 chr15 20908197 20910750 -80469771 + L1PA5 LINE L1 3598 6154 0 1456 228 115 54 chr15 20910750 20910943 -80469578 + L1MEc LINE L1 2608 2840 -3375 249 314 78 11 chr15 20910958 20911149 -80469372 + L1MB5 LINE L1 8 211 -6331 1328 117 254 0 chr15 20911490 20911730 -80468791 + AluSx SINE Alu 1 301 -1 3920 223 77 26 chr15 20911731 20913166 -80467355 + L1M4 LINE L1 818 2415 -4231 22 35 0 0 chr15 20913403 20913432 -80467089 + AT_rich Low_complexity Low_complexity 1 29 0 4351 231 77 18 chr15 20913765 20915474 -80465047 + L1M4 LINE L1 2404 4217 -2427 887 239 133 0 chr15 20915499 20915808 -80464713 + L1M4 LINE L1 5440 5789 -855 900 188 30 61 chr15 20915814 20915905 -80464616 + L1MC1 LINE L1 6015 6107 -226 1771 159 17 17 chr15 20915905 20916200 -80464321 + AluSx SINE Alu 1 295 -17 900 188 30 61 chr15 20916200 20916305 -80464216 + L1MC1 LINE L1 6107 6205 -128 1227 166 97 62 chr15 20916307 20916596 -80463925 + MLT1B LTR MaLR 92 390 0 2683 252 41 78 chr15 20916693 20917148 -80463373 + L1MB5 LINE L1 353 823 -5719 1945 116 39 11 chr15 20917148 20917432 -80463089 - AluSq SINE Alu -21 292 1 2683 252 41 78 chr15 20917432 20918163 -80462358 + L1MB5 LINE L1 823 1496 -5046 1578 215 69 23 chr15 20918168 20920309 -80460212 + L1MB5 LINE L1 4296 6672 0 2380 229 47 64 chr15 20920309 20921285 -80459236 + L1M4 LINE L1 2684 3642 -3002 333 329 77 41 chr15 20921341 20921587 -80458934 - L1M4 LINE L1 -6275 267 13 * 3259 228 66 48 chr15 20921581 20922708 -80457813 - L1MCb LINE L1 -4759 1805 700 7390 32 16 0 chr15 20922708 20923214 -80457307 - L1PA3 LINE L1 0 6155 5659 180 0 0 0 chr15 20923214 20923234 -80457287 + (TA)n Simple_repeat Simple_repeat 1 20 0 7390 32 16 0 chr15 20923234 20924081 -80456440 - L1PA3 LINE L1 -496 5659 4782 3259 228 66 48 chr15 20924081 20924125 -80456396 - L1MCb LINE L1 -5864 700 658 2284 44 44 0 chr15 20924125 20924430 -80456091 + AluY SINE Alu 1 317 0 3259 228 66 48 chr15 20924430 20925026 -80455495 - L1MCb LINE L1 -5906 658 14 3917 241 69 45 chr15 20925036 20926676 -80453845 - L1M4c LINE L1 -2433 3949 2243 198 26 77 0 chr15 20926676 20926715 -80453806 + (TA)n Simple_repeat Simple_repeat 1 42 0 3917 241 69 45 chr15 20926715 20926891 -80453630 - L1M4c LINE L1 -4139 2243 2073 1877 156 33 3 chr15 20926926 20927291 -80453230 - L1MA9 LINE L1 0 6376 6001 4818 209 55 15 chr15 20927308 20929162 -80451359 - L1MA9 LINE L1 -482 5894 3952 3649 32 60 2 chr15 20929162 20929625 -80450896 - L1PA5 LINE L1 -3 6151 5662 2845 38 4 0 chr15 20929625 20930073 -80450448 - L1PA4 LINE L1 -2 6153 5571 2480 42 3 0 chr15 20930069 20930549 -80449972 + L1PA4 LINE L1 5088 5568 -586 * 6265 222 80 43 chr15 20930540 20932156 -80448365 - L1MA9 LINE L1 -2236 3974 2419 396 0 0 0 chr15 20932156 20932200 -80448321 + (TG)n Simple_repeat Simple_repeat 1 44 0 6265 222 80 43 chr15 20932200 20934028 -80446493 - L1MA9 LINE L1 -3791 2419 729 1948 146 133 21 chr15 20934028 20934413 -80446108 - MSTA LTR MaLR 0 428 1 6265 222 80 43 chr15 20934413 20935170 -80445351 - L1MA9 LINE L1 -5481 729 1 5114 239 102 13 chr15 20935223 20936520 -80444001 - L1M4c LINE L1 -4491 2155 975 279 0 0 0 chr15 20936520 20936551 -80443970 + (TG)n Simple_repeat Simple_repeat 2 32 0 5114 239 102 13 chr15 20936551 20936649 -80443872 - L1M4c LINE L1 -5671 975 887 2284 76 35 0 chr15 20936649 20936938 -80443583 - AluSg SINE Alu -11 299 1 5114 239 102 13 chr15 20936938 20937517 -80443004 - L1M4c LINE L1 -5759 887 13 2344 263 68 26 chr15 20937532 20937980 -80442541 - L1M4 LINE L1 -2291 4666 4238 1920 160 0 0 chr15 20937980 20938273 -80442248 - AluJb SINE Alu -19 293 1 2344 263 68 26 chr15 20938273 20938902 -80441619 - L1M4 LINE L1 -2719 4238 3544 552 15 0 0 chr15 20940357 20940422 -80440099 + (CA)n Simple_repeat Simple_repeat 2 66 0 31 48 0 16 chr15 20940958 20940999 -80439522 + AT_rich Low_complexity Low_complexity 1 42 -20 2506 38 0 0 chr15 20940999 20941291 -80439230 - AluY SINE Alu -19 292 1 31 48 0 16 chr15 20941291 20941312 -80439209 + AT_rich Low_complexity Low_complexity 42 62 0 280 206 76 0 chr15 20941576 20941707 -80438814 + (TA)n Simple_repeat Simple_repeat 2 142 0 497 266 14 0 chr15 20943084 20943227 -80437294 - L1ME3A LINE L1 0 6170 6026 2189 103 0 0 chr15 20944481 20944773 -80435748 + AluSg SINE Alu 1 292 -18 288 0 0 0 chr15 20946465 20946497 -80434024 + (CA)n Simple_repeat Simple_repeat 2 33 0 522 315 101 73 chr15 20946497 20947279 -80433242 + L1M4 LINE L1 2152 2955 -3191 435 249 67 31 chr15 20947332 20947659 -80432862 + L1M4 LINE L1 2946 3282 -2864 613 247 44 6 chr15 20947664 20947846 -80432675 - L1M4 LINE L1 -3435 3522 3334 1129 228 134 39 chr15 20947862 20947942 -80432579 + MSTD LTR MaLR 21 92 -304 2354 57 0 0 chr15 20947942 20948239 -80432282 + AluY SINE Alu 1 297 -14 1129 228 134 39 chr15 20948239 20948502 -80432019 + MSTD LTR MaLR 92 396 0 374 148 0 0 chr15 20948527 20948588 -80431933 - L1M4 LINE L1 -1199 4947 4887 2186 260 56 47 chr15 20949022 20950477 -80430044 - L1M4 LINE L1 -3943 3016 1556 1493 141 5 0 chr15 20950479 20950699 -80429822 - AluSg/x SINE Alu -18 294 74 900 173 0 0 chr15 20950704 20950854 -80429667 - L1M4 LINE L1 -457 5717 5568 198 0 0 0 chr15 20953619 20953641 -80426880 + (A)n Simple_repeat Simple_repeat 1 22 0 3024 96 49 11 chr15 20954761 20955209 -80425312 + MER4C LTR ERV1 1 465 0 22 0 0 0 chr15 20955400 20955422 -80425099 + AT_rich Low_complexity Low_complexity 1 22 0 2185 97 0 7 chr15 20956685 20956985 -80423536 + AluSg SINE Alu 1 298 -12 2616 249 25 18 chr15 20958687 20959565 -80420956 - L1MCb LINE L1 -3012 3552 2669 833 225 55 22 chr15 20959572 20959754 -80420767 - AluJo SINE Alu -10 302 115 594 198 94 19 chr15 20959754 20959968 -80420553 - L1MCb LINE L1 -3952 2612 2415 1347 105 0 5 chr15 20959968 20960158 -80420363 + AluSp SINE Alu 125 313 0 2244 81 0 31 chr15 20960197 20960517 -80420004 - AluY SINE Alu -1 310 1 727 155 13 97 chr15 20960517 20960672 -80419849 - FLAM_C SINE Alu 0 143 2 517 247 37 6 chr15 20960673 20960835 -80419686 - L1MCb LINE L1 -4135 2429 2263 207 0 0 0 chr15 20960853 20960876 -80419645 + (TA)n Simple_repeat Simple_repeat 1 23 0 39541 67 5 5 chr15 20960877 20967010 -80413511 - L1PA5 LINE L1 -14 6140 11 1961 248 49 45 chr15 20967053 20968407 -80412114 - L1MCb LINE L1 -4407 2157 704 6089 116 48 62 chr15 20968867 20970028 -80410493 + pTR5 LTR ERV1 743 2019 -419 369 248 44 44 chr15 20970028 20970141 -80410380 + LTR30 LTR ERV1 544 721 -73 1546 78 5 5 chr15 20970141 20970359 -80410162 + pTR5 LTR ERV1 177 394 -2044 5085 118 25 19 chr15 21047778 21048753 -80331768 + MER11C LTR ERVK 1 1071 0 310 305 121 55 chr15 21052641 21052913 -80327608 - L1M4 LINE L1 -2725 3421 3132 33 109 0 0 chr15 21053551 21053689 -80326832 + AT_rich Low_complexity Low_complexity 1 138 0 223 368 158 18 chr15 21053827 21053998 -80326523 - MIR SINE MIR -13 249 55 276 333 67 8 chr15 21054659 21054779 -80325742 - L3 LINE CR1 -95 1482 1356 2123 166 68 7 chr15 21054844 21055253 -80325268 - Tigger2a DNA MER2_type 0 434 1 2065 95 0 27 chr15 21055775 21056070 -80324451 - AluSc SINE Alu -4 305 19 1282 217 50 7 chr15 21057159 21057440 -80323081 + AluJo SINE Alu 1 293 -19 2163 106 10 0 chr15 21057773 21058065 -80322456 + AluSp SINE Alu 1 295 -18 301 224 0 0 chr15 21063480 21063538 -80316983 + L1MC4 LINE L1 6648 6705 -1337 269 324 52 7 chr15 21064590 21064726 -80315795 - L1ME LINE L1 -395 5775 5634 2186 203 20 0 chr15 21064795 21065204 -80315317 - MER47B DNA MER2_type 0 418 2 516 231 31 7 chr15 21065210 21065372 -80315149 - L1P4 LINE L1 -709 5459 5294 1397 284 122 38 chr15 21065387 21066637 -80313884 - L1ME LINE L1 -958 5188 3835 11135 235 68 33 chr15 21066671 21072261 -80308260 - L1MC1 LINE L1 -45 8135 2393 1228 193 0 0 chr15 21072261 21072479 -80308042 - AluSg/x SINE Alu -8 302 85 541 245 35 8 chr15 21072479 21072648 -80307873 - L1MC1 LINE L1 -4221 2343 2192 2784 221 78 64 chr15 21072681 21074376 -80306145 - L1MC1 LINE L1 -4851 1194 1 235 236 14 101 chr15 21074359 21074453 -80306068 - L1M4 LINE L1 -2295 3851 3773 * 2048 119 0 26 chr15 21074453 21074756 -80305765 + AluSx SINE Alu 1 295 -17 235 236 14 101 chr15 21074756 21074809 -80305712 - L1M4 LINE L1 -2373 3773 3717 414 327 49 27 chr15 21074903 21075126 -80305395 - L1M4 LINE L1 -2576 3570 3343 264 285 83 21 chr15 21075735 21075879 -80304642 - L2 LINE L2 -57 3256 3104 1644 226 48 20 chr15 21076184 21076639 -80303882 + MER110A LTR ERV1 1 468 0 540 327 38 8 chr15 21078754 21079020 -80301501 + MER110A-int LTR ERV1 2090 2363 -4438 5499 273 81 78 chr15 21079230 21082382 -80298139 + MER110A-int LTR ERV1 171 3330 -1317 2926 246 88 39 chr15 21082427 21083420 -80297101 + MER110A-int LTR ERV1 3455 4495 -152 1363 213 106 24 chr15 21083480 21083903 -80296618 + MER110A LTR ERV1 5 462 -6 306 323 60 0 chr15 21084422 21084555 -80295966 + MIR SINE MIR 101 241 -21 200 331 66 33 chr15 21084886 21085067 -80295454 + MIR SINE MIR 62 248 -14 1696 155 37 10 chr15 21085575 21085872 -80294649 + MER2 DNA MER2_type 39 343 -2 255 152 0 0 chr15 21085875 21085921 -80294600 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 430 253 21 0 chr15 21088205 21088300 -80292221 + LTR25 LTR ERV1 260 356 -438 229 270 0 90 chr15 21088303 21088403 -80292118 + MER61E LTR ERV1 99 189 -380 * 244 213 0 49 chr15 21088380 21088441 -80292080 + MER61E LTR ERV1 117 174 -395 1018 128 27 37 chr15 21088482 21088670 -80291851 + MER61E LTR ERV1 341 526 -43 21 0 0 0 chr15 21089372 21089393 -80291128 + AT_rich Low_complexity Low_complexity 1 21 0 195 352 14 14 chr15 21089473 21089544 -80290977 + MIR SINE MIR 9 79 -183 214 258 32 32 chr15 21089594 21089687 -80290834 - MIR SINE MIR -30 232 140 2129 120 0 19 chr15 21089772 21090080 -80290441 - AluSx SINE Alu -10 302 1 524 259 68 5 chr15 21090481 21090701 -80289820 - L1MEc LINE L1 -4138 2258 2025 403 156 0 0 chr15 21090729 21090793 -80289728 + AluSg/x SINE Alu 217 280 -20 441 0 0 0 chr15 21090793 21090842 -80289679 + (TA)n Simple_repeat Simple_repeat 1 49 0 2748 269 138 25 chr15 21090918 21092362 -80288159 + L1ME2 LINE L1 2079 3744 -2471 14170 134 85 11 chr15 21092362 21094889 -80285632 + Tigger2 DNA MER2_type 4 2718 0 2748 269 138 25 chr15 21094889 21095354 -80285167 + L1ME2 LINE L1 3744 4155 -2060 234 172 140 11 chr15 21095390 21095483 -80285038 + L1ME2 LINE L1 4397 4501 -1714 1228 262 149 26 chr15 21095547 21096204 -80284317 + L1ME2 LINE L1 4515 5252 -963 1161 172 13 40 chr15 21096208 21096435 -80284086 + AluJo SINE Alu 87 307 -5 592 164 35 0 chr15 21096438 21096554 -80283967 + L1MB5 LINE L1 5989 6108 -66 233 116 0 23 chr15 21096688 21096731 -80283790 + (GGAAA)n Simple_repeat Simple_repeat 3 44 0 6149 213 46 80 chr15 21096903 21099025 -80281496 + L1MC4a LINE L1 5755 7803 -5 2018 244 148 16 chr15 21099027 21099769 -80280752 + L1ME2 LINE L1 5381 6220 -13 24 0 0 0 chr15 21099835 21099859 -80280662 + AT_rich Low_complexity Low_complexity 1 24 0 261 307 74 48 chr15 21100591 21100900 -80279621 + L1MC/D LINE L1 3508 3824 -2322 701 228 73 6 chr15 21101264 21101528 -80278993 + MER110 LTR ERV1 166 491 0 180 0 0 0 chr15 21101767 21101787 -80278734 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 244 243 27 54 chr15 21101875 21101986 -80278535 + L1MC/D LINE L1 4496 4603 -1543 523 271 92 48 chr15 21102511 21102847 -80277674 + L1MC/D LINE L1 5354 5704 -2104 26 0 0 0 chr15 21103167 21103193 -80277328 + AT_rich Low_complexity Low_complexity 1 26 0 291 114 0 0 chr15 21104405 21104449 -80276072 + (A)n Simple_repeat Simple_repeat 1 44 0 202 371 21 7 chr15 21104764 21104904 -80275617 - L2 LINE L2 -5 3308 3167 261 0 0 0 chr15 21105536 21105565 -80274956 + (CA)n Simple_repeat Simple_repeat 2 30 0 2293 192 52 18 chr15 21106960 21107496 -80273025 + MER54A LTR ERVL 147 901 0 2014 108 3 0 chr15 21107813 21108099 -80272422 + AluSx SINE Alu 2 288 -24 373 115 0 0 chr15 21108115 21108167 -80272354 - MER66B LTR ERV1 -140 346 295 2458 260 99 19 chr15 21108363 21108730 -80271791 - L1MEc LINE L1 -2820 3395 3059 1704 163 0 7 chr15 21108730 21109024 -80271497 - AluJb SINE Alu -20 292 1 2458 260 99 19 chr15 21109024 21109274 -80271247 - L1MEc LINE L1 -3156 3059 2831 270 116 0 0 chr15 21109274 21109317 -80271204 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 2458 260 99 19 chr15 21109317 21110014 -80270507 - L1MEc LINE L1 -3384 2831 2005 1142 188 4 83 chr15 21119094 21119248 -80261273 + MER2 DNA MER2_type 91 215 -130 2217 125 0 0 chr15 21119248 21119560 -80260961 + AluSx SINE Alu 1 312 0 1142 188 4 83 chr15 21119560 21119681 -80260840 + MER2 DNA MER2_type 215 344 -1 6499 55 4 2 chr15 21119832 21120635 -80259886 + L1PA7 LINE L1 5351 6154 0 204 97 0 0 chr15 21121461 21121492 -80259029 + (TA)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr15 21121731 21121762 -80258759 + AT_rich Low_complexity Low_complexity 1 31 0 2063 128 0 0 chr15 21122428 21122726 -80257795 + AluSx SINE Alu 1 298 -14 22 106 0 0 chr15 21124418 21124503 -80256018 + AT_rich Low_complexity Low_complexity 1 85 0 1879 234 80 54 chr15 21125667 21126351 -80254170 + L1MDb LINE L1 663 1364 -5045 1959 141 14 0 chr15 21126389 21126686 -80253835 - AluSg SINE Alu -9 301 1 203 200 0 0 chr15 21127798 21127833 -80252688 + A-rich Low_complexity Low_complexity 1 35 0 283 247 74 0 chr15 21128027 21128108 -80252413 + LTR57-int LTR ERVL 2090 2176 -3167 297 0 0 0 chr15 21150178 21150211 -80230310 + (TG)n Simple_repeat Simple_repeat 1 33 0 297 131 0 0 chr15 21152787 21152848 -80227673 + (TG)n Simple_repeat Simple_repeat 2 62 0 230 284 0 0 chr15 21155479 21155546 -80224975 + (TG)n Simple_repeat Simple_repeat 2 68 0 318 204 0 0 chr15 21160940 21161048 -80219473 + (TG)n Simple_repeat Simple_repeat 1 108 0 243 0 0 0 chr15 21163731 21163758 -80216763 + (TG)n Simple_repeat Simple_repeat 2 28 0 348 64 0 0 chr15 21169066 21169113 -80211408 + (TG)n Simple_repeat Simple_repeat 2 48 0 566 121 9 0 chr15 21171812 21171928 -80208593 + (TG)n Simple_repeat Simple_repeat 2 118 0 2175 237 62 13 chr15 21172597 21173280 -80207241 + L1M3 LINE L1 4536 5251 -895 1024 231 30 41 chr15 21173296 21173564 -80206957 + AluJb SINE Alu 5 269 -43 703 196 0 5 chr15 21173594 21173809 -80206712 + GA-rich Low_complexity Low_complexity 1 213 0 2251 187 22 11 chr15 21173909 21174037 -80206484 + L1M3 LINE L1 5357 5482 -852 2210 91 0 4 chr15 21174037 21174312 -80206209 + AluSq SINE Alu 1 274 -39 2251 187 22 11 chr15 21174312 21174642 -80205879 + L1M3 LINE L1 5482 5820 -514 2507 134 86 32 chr15 21174678 21174877 -80205644 + L1PA15 LINE L1 5219 5406 -760 1753 151 43 0 chr15 21174877 21175176 -80205345 + AluSx SINE Alu 1 312 0 2507 134 86 32 chr15 21175176 21175502 -80205019 + L1PA15 LINE L1 5406 5766 -400 1953 180 46 55 chr15 21175503 21176044 -80204477 - MLT2A2 LTR ERVL 0 554 1 1198 146 3 3 chr15 21176045 21176383 -80204138 + L1PA15 LINE L1 5756 6145 -20 1052 245 104 41 chr15 21176432 21177561 -80202960 + L1M4 LINE L1 1337 2762 -3884 1075 191 0 38 chr15 21177575 21177785 -80202736 + AluJo SINE Alu 84 285 -27 1687 221 98 119 chr15 21177804 21177936 -80202585 + L1M4 LINE L1 2760 2893 -3751 2522 65 0 0 chr15 21177936 21178230 -80202291 + AluY SINE Alu 1 294 -17 1687 221 98 119 chr15 21178230 21179027 -80201494 + L1M4 LINE L1 2893 3774 -2870 456 328 8 0 chr15 21179027 21179152 -80201369 + FLAM_C SINE Alu 1 126 -7 1687 221 98 119 chr15 21179152 21179586 -80200935 + L1M4 LINE L1 3774 4216 -2428 1454 197 0 67 chr15 21179587 21179887 -80200634 + AluJo SINE Alu 2 281 -31 191 35 0 35 chr15 21179891 21179920 -80200601 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2112 87 72 0 chr15 21180886 21181162 -80199359 - AluSp SINE Alu -17 296 1 22 0 0 0 chr15 21181300 21181322 -80199199 + AT_rich Low_complexity Low_complexity 1 22 0 730 181 0 30 chr15 21181322 21181455 -80199066 + FLAM_A SINE Alu 1 129 -4 63 26 0 0 chr15 21181630 21181707 -80198814 + AT_rich Low_complexity Low_complexity 1 77 0 2070 114 4 0 chr15 21182027 21182307 -80198214 - AluSx SINE Alu -21 291 11 450 0 0 0 chr15 21182576 21182626 -80197895 + (TA)n Simple_repeat Simple_repeat 1 50 0 2461 83 0 16 chr15 21183026 21183339 -80197182 - AluY SINE Alu -3 308 1 915 210 188 15 chr15 21183489 21183761 -80196760 + L1MB7 LINE L1 5582 5900 -284 1768 257 157 15 chr15 21183917 21184769 -80195752 - L1MC4 LINE L1 -3 8039 7067 21 57 0 0 chr15 21185841 21185876 -80194645 + AT_rich Low_complexity Low_complexity 1 35 0 36 62 0 0 chr15 21185998 21186062 -80194459 + AT_rich Low_complexity Low_complexity 1 64 0 232 309 98 4 chr15 21186389 21186625 -80193896 - L1ME LINE L1 -312 5809 5552 24 32 0 0 chr15 21186696 21186727 -80193794 + AT_rich Low_complexity Low_complexity 1 31 0 277 228 18 53 chr15 21186754 21186868 -80193653 - L1ME LINE L1 -883 5420 5311 724 249 41 30 chr15 21187602 21187799 -80192722 + MER58A DNA MER1_type 26 224 0 202 231 88 0 chr15 21188153 21188244 -80192277 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 517 323 25 0 chr15 21189485 21189686 -80190835 + L1ME LINE L1 10 215 -5855 652 250 4 74 chr15 21189699 21189955 -80190566 + L1ME LINE L1 320 557 -5513 415 217 15 152 chr15 21190048 21190246 -80190275 + MER20 DNA MER1_type 44 214 -5 412 254 123 9 chr15 21190253 21190481 -80190040 + L1ME LINE L1 564 817 -5253 1359 173 39 27 chr15 21190527 21190787 -80189734 + AluJo SINE Alu 43 305 -7 586 265 122 67 chr15 21190789 21191503 -80189018 + L1ME LINE L1 857 1609 -4471 1744 117 0 0 chr15 21193458 21193688 -80186833 + AluSg SINE Alu 52 281 -29 2303 257 163 29 chr15 21193712 21194504 -80186017 + L1ME LINE L1 2534 3218 -2862 2462 70 0 3 chr15 21194504 21194806 -80185715 + AluY SINE Alu 1 301 -10 2303 257 163 29 chr15 21194806 21195233 -80185288 + L1ME LINE L1 3218 3586 -2494 1671 143 94 0 chr15 21195233 21195499 -80185022 + AluSq SINE Alu 1 291 -22 2303 257 163 29 chr15 21195499 21196113 -80184408 + L1ME LINE L1 3586 4802 -1278 2070 106 46 13 chr15 21198593 21198896 -80181625 - AluSq SINE Alu 0 313 1 299 231 115 0 chr15 21199183 21199261 -80181260 + MLT1G LTR MaLR 497 583 -7 3868 98 122 5 chr15 21199935 21200525 -80179996 + PABL_A LTR ERV1 1 659 -1 2323 88 0 16 chr15 21202462 21202767 -80177754 - AluSq SINE Alu -13 300 1 229 151 38 0 chr15 21203772 21203825 -80176696 + MER109 Unknown Unknown 936 990 -1442 2324 86 0 0 chr15 21204435 21204726 -80175795 - AluSg SINE Alu -19 291 1 25 31 0 0 chr15 21204777 21204809 -80175712 + AT_rich Low_complexity Low_complexity 1 32 0 479 283 40 35 chr15 21205192 21205390 -80175131 + MER8 DNA MER2_type 1 199 -40 21 36 0 0 chr15 21206248 21206276 -80174245 + AT_rich Low_complexity Low_complexity 1 28 0 201 240 0 0 chr15 21206733 21206808 -80173713 + (TA)n Simple_repeat Simple_repeat 1 75 0 214 402 0 0 chr15 21210661 21210743 -80169778 - L2 LINE L2 -18 3295 3214 22 56 0 0 chr15 21211828 21211864 -80168657 + AT_rich Low_complexity Low_complexity 1 36 0 552 263 111 12 chr15 21212115 21212286 -80168235 + MER5A DNA MER1_type 2 189 0 315 161 0 0 chr15 21212865 21212921 -80167600 + (CA)n Simple_repeat Simple_repeat 2 57 0 1306 153 61 4 chr15 21214150 21214378 -80166143 + AluSg SINE Alu 1 241 -69 332 26 0 0 chr15 21214916 21214954 -80165567 + (CA)n Simple_repeat Simple_repeat 1 38 0 207 0 0 0 chr15 21214953 21214976 -80165545 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 2038 139 14 0 chr15 21215948 21216242 -80164279 - AluSx SINE Alu -12 300 3 1841 108 0 34 chr15 21216332 21216629 -80163892 - AluSx SINE Alu -7 305 19 1338 186 67 22 chr15 21216876 21217145 -80163376 + AluJo SINE Alu 3 283 -29 253 283 22 33 chr15 21217170 21217262 -80163259 - L2 LINE L2 -2 3311 3221 2110 117 0 0 chr15 21218190 21218492 -80162029 + AluSx SINE Alu 1 302 0 2478 68 13 0 chr15 21219045 21219352 -80161169 - AluY SINE Alu 0 311 1 343 159 0 72 chr15 21271088 21271157 -80109364 + MER58A DNA MER1_type 161 224 0 1742 170 11 3 chr15 21271180 21271463 -80109058 - AluSx SINE Alu -27 285 1 1879 146 3 3 chr15 21271597 21271891 -80108630 + AluSx SINE Alu 2 295 -17 2216 102 10 3 chr15 21272443 21272736 -80107785 + AluSg SINE Alu 1 295 -15 2127 148 143 11 chr15 21273091 21273469 -80107052 - MSTA LTR MaLR 0 428 1 2060 130 7 0 chr15 21273569 21273869 -80106652 + AluSc SINE Alu 1 302 -7 209 33 33 0 chr15 21273947 21273977 -80106544 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 827 181 87 0 chr15 21273984 21274133 -80106388 + AluJo SINE Alu 127 288 -24 23 0 0 0 chr15 21274133 21274156 -80106365 + AT_rich Low_complexity Low_complexity 1 23 0 2674 166 58 42 chr15 21274218 21274721 -80105800 - L1MB3 LINE L1 -1 6182 5668 1885 125 0 54 chr15 21274721 21275034 -80105487 - AluSx SINE Alu -16 296 1 2674 166 58 42 chr15 21275034 21275084 -80105437 - L1MB3 LINE L1 -515 5668 5620 663 126 0 0 chr15 21275093 21275180 -80105341 - AluS SINE Alu -225 88 2 1947 226 52 21 chr15 21275187 21275710 -80104811 - MER74B LTR ERVL -82 540 2 2421 166 43 61 chr15 21275713 21276025 -80104496 - L1MB3 LINE L1 -560 5623 5307 192 97 0 0 chr15 21276025 21276056 -80104465 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2021 142 0 0 chr15 21276056 21276339 -80104182 - AluSx SINE Alu -29 283 1 2421 166 43 61 chr15 21276339 21276390 -80104131 - L1MB3 LINE L1 -875 5308 5258 2018 166 0 0 chr15 21276390 21276697 -80103824 - AluSx SINE Alu -5 307 1 2421 166 43 61 chr15 21276697 21277170 -80103351 - L1MB3 LINE L1 -925 5258 4793 240 59 0 0 chr15 21277356 21277390 -80103131 + (TG)n Simple_repeat Simple_repeat 1 34 0 872 196 6 30 chr15 21277412 21277580 -80102941 - MLT2D LTR ERVL -54 360 197 2189 122 16 0 chr15 21277581 21277884 -80102637 - AluSx SINE Alu -4 308 1 12706 182 39 20 chr15 21277885 21278366 -80102155 - ERVL LTR ERVL -303 5461 4991 2147 113 0 3 chr15 21278366 21278685 -80101836 - AluSg SINE Alu 0 310 1 12706 182 39 20 chr15 21278685 21280418 -80100103 - ERVL LTR ERVL -773 4991 3198 2160 138 0 6 chr15 21280418 21280729 -80099792 - AluSx SINE Alu -3 309 1 12706 182 39 20 chr15 21280729 21280854 -80099667 - ERVL LTR ERVL -2566 3198 3077 555 258 67 16 chr15 21280838 21281032 -80099489 - ERVL LTR ERVL -5345 419 216 * 841 107 90 0 chr15 21281034 21281156 -80099365 + AluSq/x SINE Alu 1 133 -179 282 264 86 71 chr15 21281167 21281307 -80099214 - ERVL LTR ERVL -5621 143 2 1918 179 42 32 chr15 21281315 21281718 -80098803 - MLT2D LTR ERVL -7 407 1 955 203 81 0 chr15 21281718 21281915 -80098606 - MER58B DNA MER1_type -29 312 100 216 0 0 0 chr15 21281951 21281975 -80098546 + (A)n Simple_repeat Simple_repeat 1 24 0 874 171 7 13 chr15 21282020 21282172 -80098349 + FAM SINE Alu 20 170 -15 480 270 20 7 chr15 21282716 21282868 -80097653 + MIR SINE MIR 2 155 -107 1042 175 0 0 chr15 21282869 21283035 -80097486 + AluJb SINE Alu 137 302 -10 1607 199 3 27 chr15 21283063 21283364 -80097157 - AluJo SINE Alu -5 307 14 32 26 0 0 chr15 21283383 21283422 -80097099 + AT_rich Low_complexity Low_complexity 1 39 0 214 235 59 0 chr15 21283452 21283503 -80097018 + MIR SINE MIR 184 237 -25 2263 114 3 0 chr15 21283957 21284263 -80096258 + AluSg SINE Alu 1 307 -3 725 35 0 0 chr15 21284555 21284641 -80095880 - L1PA3 LINE L1 0 6155 6070 207 0 0 0 chr15 21284708 21284731 -80095790 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2180 98 0 11 chr15 21284734 21285020 -80095501 - AluSc SINE Alu -26 283 1 1470 183 101 6 chr15 21285020 21285358 -80095163 - L1MC3 LINE L1 -23 7762 7393 * 3379 166 50 99 chr15 21285355 21285619 -80094902 - L1MB7 LINE L1 0 6184 5909 2444 100 0 0 chr15 21285619 21285929 -80094592 - AluSx SINE Alu -2 310 1 3379 166 50 99 chr15 21285929 21285976 -80094545 - L1MB7 LINE L1 -275 5909 5861 1719 189 0 3 chr15 21285976 21286277 -80094244 + AluJo SINE Alu 2 301 -11 3379 166 50 99 chr15 21286277 21286423 -80094098 - L1MB7 LINE L1 -323 5861 5709 1512 199 46 26 chr15 21286423 21286729 -80093792 - AluJo SINE Alu 0 312 1 3379 166 50 99 chr15 21286729 21286789 -80093732 - L1MB7 LINE L1 -475 5709 5648 2255 95 0 0 chr15 21286789 21287074 -80093447 - AluSg SINE Alu -17 293 9 3379 166 50 99 chr15 21287074 21287148 -80093373 - L1MB7 LINE L1 -536 5648 5572 1790 156 16 10 chr15 21287148 21287455 -80093066 - AluJo SINE Alu -3 309 1 1912 129 10 23 chr15 21287461 21287770 -80092751 - AluSx SINE Alu -7 305 1 3379 166 50 99 chr15 21287770 21288121 -80092400 - L1MB7 LINE L1 -617 5567 5297 2041 146 7 0 chr15 21288121 21288415 -80092106 - AluSx SINE Alu -16 296 1 3379 166 50 99 chr15 21288415 21288644 -80091877 - L1MB7 LINE L1 -887 5297 5058 304 231 27 7 chr15 21288644 21288791 -80091730 + (TA)n Simple_repeat Simple_repeat 2 151 0 273 133 0 0 chr15 21288819 21288864 -80091657 - L1MB7 LINE L1 -1144 5002 4958 29 28 0 0 chr15 21289329 21289365 -80091156 + AT_rich Low_complexity Low_complexity 1 36 0 322 254 97 6 chr15 21289403 21289568 -80090953 + L1MC3 LINE L1 7444 7623 -162 477 276 91 25 chr15 21289635 21289878 -80090643 - MIR SINE MIR -2 260 2 2232 110 3 0 chr15 21289929 21290228 -80090293 - AluSc SINE Alu -9 300 1 329 187 13 27 chr15 21290301 21290376 -80090145 - MER116 DNA Mariner -6 74 1 562 127 0 64 chr15 21295102 21295212 -80085309 - FLAM_A SINE Alu 0 142 40 1514 193 10 3 chr15 21295330 21295625 -80084896 - AluJo SINE Alu -15 297 1 677 153 85 25 chr15 21295952 21296070 -80084451 + FLAM_C SINE Alu 1 125 -18 839 143 54 0 chr15 21296296 21296443 -80084078 - L1MB7 LINE L1 -334 5850 5696 1423 109 0 0 chr15 21296592 21296776 -80083745 + AluSx SINE Alu 3 186 -126 249 250 250 9 chr15 21296799 21296911 -80083610 - L1MB7 LINE L1 -526 5640 5502 1219 157 89 8 chr15 21296953 21297189 -80083332 - AluJb SINE Alu -18 294 40 756 190 69 6 chr15 21297207 21297381 -80083140 - L1MB7 LINE L1 -733 5441 5257 383 257 16 82 chr15 21297392 21297575 -80082946 - L1MA10 LINE L1 -7 6327 6157 398 254 127 5 chr15 21297581 21297778 -80082743 - L1MB7 LINE L1 -870 5276 5056 21 36 0 0 chr15 21299513 21299541 -80080980 + AT_rich Low_complexity Low_complexity 1 28 0 327 268 113 12 chr15 21299743 21299911 -80080610 - L1MC4a LINE L1 -1918 5890 5706 2285 116 0 0 chr15 21299942 21300243 -80080278 + AluSg SINE Alu 1 301 -9 21 36 0 0 chr15 21300259 21300287 -80080234 + AT_rich Low_complexity Low_complexity 1 28 0 1728 169 28 3 chr15 21300364 21300654 -80079867 + AluJo SINE Alu 1 297 -15 1861 118 83 17 chr15 21300917 21301205 -80079316 - AluSp SINE Alu -6 307 1 2068 127 10 0 chr15 21301863 21302163 -80078358 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr15 21302171 21302192 -80078329 + AT_rich Low_complexity Low_complexity 1 21 0 902 275 112 83 chr15 21302661 21303333 -80077188 - MER21B LTR ERV1 -149 714 24 2245 100 0 7 chr15 21303967 21304266 -80076255 + AluSx SINE Alu 3 299 -13 1104 165 0 0 chr15 21304266 21304436 -80076085 + AluSg/x SINE Alu 132 301 -9 26 0 0 0 chr15 21304927 21304953 -80075568 + AT_rich Low_complexity Low_complexity 1 26 0 2162 116 3 0 chr15 21305742 21306036 -80074485 - AluSq SINE Alu -18 295 1 656 259 27 22 chr15 21306420 21306605 -80073916 + MER58A DNA MER1_type 33 218 -6 427 115 0 0 chr15 21306906 21306967 -80073554 + AluS SINE Alu 2 62 -256 1040 227 34 0 chr15 21507933 21508171 -79872350 + L1MA7 LINE L1 6043 6288 -3 2122 113 0 0 chr15 21508201 21508534 -79871987 + AluY SINE Alu 1 333 0 1156 273 50 34 chr15 21510538 21510978 -79869543 + L1MD2 LINE L1 17 463 -6077 3102 261 47 30 chr15 21511013 21511516 -79869005 + L1MD2 LINE L1 2998 3491 -3049 1839 166 3 0 chr15 21511516 21511833 -79868688 - AluSx SINE Alu 0 312 1 3102 261 47 30 chr15 21511833 21512511 -79868010 + L1MD2 LINE L1 3491 4200 -2340 1407 157 18 18 chr15 21512616 21512845 -79867676 - Tigger4(Zombi) DNA MER2_type -2502 229 1 4562 233 58 61 chr15 21512855 21513438 -79867083 - L1MC4a LINE L1 -58 7750 7167 2195 119 0 0 chr15 21513438 21513731 -79866790 + AluSg SINE Alu 3 295 -15 4562 233 58 61 chr15 21513731 21514636 -79865885 - L1MC4a LINE L1 -641 7167 6267 393 313 105 35 chr15 21514791 21515133 -79865388 - MLT1J1 LTR MaLR -61 385 20 538 293 175 17 chr15 21516264 21516561 -79863960 + L2 LINE L2 2967 3310 -3 1574 6 0 0 chr15 21516827 21516997 -79863524 + AluY SINE Alu 134 303 -8 518 382 13 9 chr15 21517262 21517490 -79863031 + MIR SINE MIR 3 231 -31 225 83 0 0 chr15 21517609 21517645 -79862876 + (TC)n Simple_repeat Simple_repeat 2 37 0 1239 134 3 0 chr15 21518538 21518897 -79861624 + (TGGA)n Simple_repeat Simple_repeat 1 360 0 585 179 0 11 chr15 21519035 21519130 -79861391 + AluJo/FLAM SINE Alu 32 125 -187 346 62 0 0 chr15 21519130 21519178 -79861343 - AluSc SINE Alu -5 294 247 4178 202 78 33 chr15 21519313 21519367 -79861154 + L1MD2 LINE L1 5196 5246 -1507 2339 57 3 3 chr15 21519367 21519683 -79860838 - AluY SINE Alu 0 316 1 4178 202 78 33 chr15 21519683 21521100 -79859421 + L1MD2 LINE L1 5246 6743 -10 2120 163 98 28 chr15 21521117 21521517 -79859004 + MSTA LTR MaLR 1 428 0 2312 102 0 0 chr15 21521663 21521956 -79858565 + AluSx SINE Alu 1 293 -19 188 246 98 16 chr15 21522972 21523033 -79857488 - MIR SINE MIR -147 115 50 2408 88 0 0 chr15 21523161 21523467 -79857054 + AluSg SINE Alu 1 306 -4 1530 152 4 8 chr15 21524519 21524783 -79855738 + AluJo SINE Alu 41 303 -9 342 0 0 0 chr15 21525305 21525343 -79855178 + (CA)n Simple_repeat Simple_repeat 2 39 0 189 118 0 59 chr15 21525360 21525394 -79855127 - MIR SINE MIR -115 147 116 615 153 0 108 chr15 21526550 21526707 -79853814 + L1MA4 LINE L1 6155 6294 -6 220 162 0 0 chr15 21526880 21526917 -79853604 - L2 LINE L2 0 3272 3236 2002 115 28 0 chr15 21528006 21528292 -79852229 + AluSq SINE Alu 1 294 -19 222 37 0 0 chr15 21528744 21528771 -79851750 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr15 21530110 21530133 -79850388 + AT_rich Low_complexity Low_complexity 1 23 0 2328 184 28 23 chr15 21530133 21530417 -79850104 - L1MB3 LINE L1 -3 6180 5892 1929 141 3 26 chr15 21530417 21530721 -79849800 - AluJo SINE Alu -14 298 2 2328 184 28 23 chr15 21530721 21530909 -79849612 - L1MB3 LINE L1 -291 5892 5706 555 239 18 18 chr15 21531009 21531122 -79849399 - FRAM SINE Alu -63 113 1 3628 224 38 32 chr15 21531124 21531292 -79849229 - L1MB3 LINE L1 -959 5187 5021 2312 108 0 3 chr15 21531292 21531597 -79848924 + AluSp SINE Alu 3 306 -7 3628 224 38 32 chr15 21531597 21532475 -79848046 - L1MB3 LINE L1 -1125 5021 4135 308 269 13 13 chr15 21534947 21535025 -79845496 - MIR SINE MIR -122 140 63 1288 263 78 21 chr15 21535259 21535685 -79844836 + L1ME2 LINE L1 19 468 -5958 679 160 0 0 chr15 21535688 21535788 -79844733 + FLAM_A SINE Alu 2 101 -41 24 0 0 0 chr15 21535813 21535837 -79844684 + AT_rich Low_complexity Low_complexity 1 24 0 4488 207 71 19 chr15 21535837 21537484 -79843037 + L1MCb LINE L1 404 2140 -4424 249 341 24 16 chr15 21537970 21538096 -79842425 - MIR SINE MIR 0 262 136 26 0 0 0 chr15 21540681 21540707 -79839814 + AT_rich Low_complexity Low_complexity 1 26 0 1784 257 66 10 chr15 21540909 21541515 -79839006 + L1ME2 LINE L1 781 1420 -5187 * 6697 243 67 29 chr15 21541487 21542493 -79838028 + L1ME2 LINE L1 3176 4142 -2304 2508 60 3 0 chr15 21542493 21542795 -79837726 + AluY SINE Alu 1 303 -8 6697 243 67 29 chr15 21542795 21544526 -79835995 + L1ME2 LINE L1 4142 6018 -428 1269 218 7 41 chr15 21544560 21544854 -79835667 - MLT1A1 LTR MaLR -20 345 62 1036 214 62 14 chr15 21544854 21545175 -79835346 - MSTD LTR MaLR -2 394 1 6169 233 98 18 chr15 21545183 21546770 -79833751 - MSTD-int LTR MaLR -8 1727 13 980 202 177 61 chr15 21546790 21547117 -79833404 - MLT1A1 LTR MaLR 0 365 1 351 153 51 0 chr15 21547118 21547177 -79833344 - MLT1A1 LTR MaLR -307 67 6 785 242 71 76 chr15 21547178 21547571 -79832950 + L1ME2 LINE L1 6020 6410 -34 1175 203 0 0 chr15 21547571 21547788 -79832733 + L1PA16 LINE L1 5950 6166 0 189 175 0 0 chr15 21548463 21548503 -79832018 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 214 391 29 10 chr15 21549036 21549243 -79831278 - L2 LINE L2 -653 2661 2451 1449 162 26 0 chr15 21549588 21549816 -79830705 - MER46A DNA MER2_type -1 235 2 244 323 75 25 chr15 21550257 21550418 -79830103 - L2 LINE L2 -190 3082 2914 511 288 50 40 chr15 21550447 21550645 -79829876 + MIR SINE MIR 14 213 -49 288 296 10 10 chr15 21550781 21550879 -79829642 - L1ME1 LINE L1 -6 6160 6063 425 211 98 16 chr15 21550879 21551002 -79829519 + MSTB LTR MaLR 1 133 -293 1466 172 51 65 chr15 21551113 21551398 -79829123 + MSTB LTR MaLR 74 355 -71 2372 88 13 0 chr15 21551398 21551705 -79828816 - AluY SINE Alu 0 311 1 1466 172 51 65 chr15 21551705 21551773 -79828748 + MSTB LTR MaLR 355 422 -4 2488 206 80 7 chr15 21551777 21552138 -79828383 - L1ME1 LINE L1 -99 6067 5734 2047 94 0 0 chr15 21552138 21552424 -79828097 - AluSq SINE Alu 0 313 28 2488 206 80 7 chr15 21552424 21552773 -79827748 - L1ME1 LINE L1 -432 5734 5184 871 181 0 0 chr15 21554070 21554203 -79826318 - FLAM_C SINE Alu 0 133 1 191 296 131 34 chr15 21554244 21554450 -79826071 - L2 LINE L2 -618 2696 2471 440 327 12 6 chr15 21556012 21556177 -79824344 + MIR SINE MIR 78 243 -19 1857 126 159 73 chr15 21556184 21556556 -79823965 - MER4A LTR ERV1 0 664 261 632 130 0 20 chr15 21556556 21556656 -79823865 - MER4A LTR ERV1 -566 98 1 216 313 0 30 chr15 21558674 21558840 -79821681 + (CAGCC)n Simple_repeat Simple_repeat 1 161 0 2315 71 3 3 chr15 21560082 21560398 -79820123 - AluSp SINE Alu 0 316 1 213 319 14 0 chr15 21561062 21561131 -79819390 + L2 LINE L2 3200 3269 -3 3412 66 2 18 chr15 21561772 21562227 -79818294 + LTR7 LTR ERV1 1 448 -2 2985 135 74 0 chr15 21563064 21563576 -79816945 + MER34C LTR ERV1 36 585 0 209 326 67 44 chr15 21564530 21564665 -79815856 - MIR3 SINE MIR -56 152 15 4125 163 27 14 chr15 21566156 21566869 -79813652 + MER72 LTR ERV1 1 722 0 3815 183 20 11 chr15 21567276 21567991 -79812530 + MER72 LTR ERV1 2 722 0 246 231 0 0 chr15 21569687 21569752 -79810769 + GA-rich Low_complexity Low_complexity 2 66 0 931 124 0 15 chr15 21571031 21571168 -79809353 + AluJo SINE Alu 1 135 -177 1576 195 13 23 chr15 21571168 21571476 -79809045 + AluJo SINE Alu 1 305 -7 255 306 108 14 chr15 21571995 21572217 -79808304 - LTR16C LTR ERVL -12 479 237 3384 178 30 10 chr15 21572225 21572831 -79807690 + Tigger1 DNA MER2_type 1 618 -1800 258 294 24 0 chr15 21573759 21573844 -79806677 - L2 LINE L2 0 3313 3227 28 95 0 0 chr15 21574002 21574086 -79806435 + AT_rich Low_complexity Low_complexity 1 84 0 277 263 53 35 chr15 21574580 21574694 -79805827 - MIR3 SINE MIR -51 157 42 1551 158 50 36 chr15 21575309 21575587 -79804934 - AluJo SINE Alu -21 291 10 2171 170 48 18 chr15 21576933 21577328 -79803193 - MLT2D LTR ERVL -7 407 1 435 241 0 0 chr15 21578618 21578780 -79801741 + CT-rich Low_complexity Low_complexity 1 162 0 1704 175 21 126 chr15 21581248 21581780 -79798741 + MER31A LTR ERV1 1 476 -9 258 143 0 0 chr15 21581803 21581852 -79798669 + (CA)n Simple_repeat Simple_repeat 2 50 0 210 303 219 0 chr15 21582554 21582732 -79797789 + L2 LINE L2 3006 3222 -91 2281 106 3 0 chr15 21582757 21583156 -79797365 - AluSx SINE Alu 0 400 1 386 121 15 0 chr15 21584003 21584069 -79796452 + GA-rich Low_complexity Low_complexity 3 69 0 458 236 51 76 chr15 21584603 21584931 -79795590 - MER34 LTR ERV1 0 750 365 375 253 70 13 chr15 21584918 21585076 -79795445 - LTR48B LTR ERV1 -354 290 124 * 227 247 13 26 chr15 21585058 21585135 -79795386 - MER34C LTR ERV1 -449 136 61 * 815 157 144 0 chr15 21586229 21586382 -79794139 + AluJb SINE Alu 133 307 -5 195 69 0 0 chr15 21587651 21587680 -79792841 + (GA)n Simple_repeat Simple_repeat 1 29 0 242 338 35 14 chr15 21587792 21587934 -79792587 - MIR SINE MIR -1 261 117 295 303 110 39 chr15 21589085 21589240 -79791281 - MIR SINE MIR -86 176 11 869 212 0 0 chr15 21589421 21589600 -79790921 - MER5A DNA MER1_type -4 185 7 229 235 0 0 chr15 21591537 21591596 -79788925 - MIR SINE MIR -65 143 94 1006 133 24 229 chr15 21591975 21592290 -79788231 + L1MA3 LINE L1 5948 6145 -160 2001 92 51 34 chr15 21592290 21592584 -79787937 + AluSp SINE Alu 15 313 0 1006 133 24 229 chr15 21592584 21592718 -79787803 + L1MA3 LINE L1 6145 6305 0 410 167 114 53 chr15 21592883 21593015 -79787506 + L1MDa LINE L1 2065 2204 -4336 1204 140 19 43 chr15 21593016 21593223 -79787298 + AluJo SINE Alu 88 289 -23 1327 241 54 35 chr15 21593223 21594000 -79786521 + L1MDa LINE L1 2196 2993 -3547 1307 243 45 43 chr15 21593990 21594409 -79786112 + L1MD2 LINE L1 5921 6340 -19 * 272 240 0 10 chr15 21595923 21596019 -79784502 + (TG)n Simple_repeat Simple_repeat 2 96 0 21 36 0 0 chr15 21596160 21596188 -79784333 + AT_rich Low_complexity Low_complexity 1 28 0 471 172 0 28 chr15 21596191 21596424 -79784097 + AluJo SINE Alu 1 286 -26 185 139 0 70 chr15 21596545 21596588 -79783933 - MIR SINE MIR -63 145 106 2260 121 0 0 chr15 21597022 21597327 -79783194 - AluSg SINE Alu -5 305 1 2140 107 4 0 chr15 21597721 21598036 -79782485 - AluSx SINE Alu 0 316 1 2581 192 28 102 chr15 21598832 21599578 -79780943 - LTR8 LTR ERV1 0 691 1 287 336 66 0 chr15 21599580 21599717 -79780804 + MIR SINE MIR 97 242 -20 2163 132 0 24 chr15 21600448 21600789 -79779732 - MER1B DNA MER1_type -4 333 1 189 255 102 20 chr15 21601010 21601108 -79779413 - MIR3 SINE MIR -22 186 81 2503 71 0 0 chr15 21601519 21601816 -79778705 - AluY SINE Alu -14 297 1 352 230 210 26 chr15 21601951 21602260 -79778261 + L1ME4a LINE L1 5753 6118 -3 226 160 200 0 chr15 21602290 21602340 -79778181 + FLAM_A SINE Alu 1 60 -72 2466 79 0 3 chr15 21602460 21602764 -79777757 + AluY SINE Alu 1 303 -8 512 76 0 0 chr15 21603136 21603202 -79777319 + LTR8A LTR ERV1 1 66 -661 3153 165 16 76 chr15 21603202 21603937 -79776584 - LTR8 LTR ERV1 0 691 1 34 0 0 0 chr15 21604308 21604342 -79776179 + AT_rich Low_complexity Low_complexity 1 34 0 2708 158 54 87 chr15 21604474 21605284 -79775237 - MER4D LTR ERV1 -8 895 1 3642 173 96 14 chr15 21605530 21606405 -79774116 - LTR28 LTR ERV1 0 1020 1 181 402 10 0 chr15 21606823 21606925 -79773596 + L2 LINE L2 1160 1262 -2052 200 267 0 0 chr15 21607134 21607179 -79773342 + (TCCA)n Simple_repeat Simple_repeat 3 47 0 342 0 0 0 chr15 21607209 21607247 -79773274 + (CA)n Simple_repeat Simple_repeat 1 38 0 1222 188 42 127 chr15 21607374 21607783 -79772738 - MLT1A2 LTR MaLR 0 374 1 2027 165 32 0 chr15 21608554 21608929 -79771592 + L1MB3 LINE L1 5790 6176 -7 3925 195 39 31 chr15 21609375 21609764 -79770757 + L1MB7 LINE L1 4978 5362 -822 2485 72 0 0 chr15 21609764 21610068 -79770453 + AluY SINE Alu 1 304 -7 3925 195 39 31 chr15 21610068 21610862 -79769659 + L1MB7 LINE L1 5362 6175 -9 521 168 126 0 chr15 21611020 21611115 -79769406 + FRAM SINE Alu 38 144 -32 1140 201 28 42 chr15 21611646 21611934 -79768587 - AluJo SINE Alu -17 295 12 2116 191 30 7 chr15 21612218 21612648 -79767873 - MLT1C LTR MaLR 0 467 28 193 289 0 0 chr15 21612989 21613041 -79767480 + L2 LINE L2 3261 3312 -1 234 0 0 0 chr15 21613258 21613284 -79767237 + (CA)n Simple_repeat Simple_repeat 1 26 0 220 212 30 15 chr15 21614064 21614130 -79766391 + (TAAA)n Simple_repeat Simple_repeat 3 69 0 901 180 0 173 chr15 21614495 21614719 -79765802 + MER8 DNA MER2_type 1 166 -73 1708 188 3 13 chr15 21614719 21615028 -79765493 + AluJo SINE Alu 6 311 -1 901 180 0 173 chr15 21615028 21615092 -79765429 + MER8 DNA MER2_type 166 239 0 2417 68 0 0 chr15 21616378 21616670 -79763851 - AluY SINE Alu -19 292 1 1995 160 20 18 chr15 21617289 21617632 -79762889 + MER2 DNA MER2_type 1 344 0 251 224 59 47 chr15 21618193 21618278 -79762243 - MER5B DNA MER1_type -40 138 53 321 324 122 15 chr15 21618304 21618705 -79761816 - L2 LINE L2 -982 2332 1889 895 296 106 17 chr15 21618758 21619231 -79761290 + L1MEd LINE L1 2 516 -5603 1635 275 138 41 chr15 21619356 21620516 -79760005 - L2 LINE L2 -3 3310 2030 438 136 152 32 chr15 21620516 21620637 -79759884 - LTR40b LTR ERVL 0 462 355 539 186 0 0 chr15 21620637 21620723 -79759798 - MER45 DNA AcHobo 0 1581 1496 317 75 19 0 chr15 21621884 21621937 -79758584 + (TA)n Simple_repeat Simple_repeat 2 55 0 180 111 0 0 chr15 21622032 21622059 -79758462 + (TATG)n Simple_repeat Simple_repeat 2 28 0 293 329 20 13 chr15 21622572 21622721 -79757800 - L2 LINE L2 -922 2392 2243 4860 37 4 9 chr15 21622919 21623480 -79757041 - LTR6B LTR ERV1 0 558 1 22 56 0 0 chr15 21623625 21623661 -79756860 + AT_rich Low_complexity Low_complexity 1 36 0 283 342 99 25 chr15 21624015 21624217 -79756304 - MIR SINE MIR -13 249 33 314 361 46 0 chr15 21624916 21625024 -79755497 + L2 LINE L2 3137 3249 -23 255 0 111 0 chr15 21628189 21628234 -79752287 + T-rich Low_complexity Low_complexity 1 50 0 250 245 0 0 chr15 21628569 21628618 -79751903 + L2 LINE L2 3265 3313 0 14513 126 44 16 chr15 21628623 21630953 -79749568 - Tigger1 DNA MER2_type 0 2418 23 203 267 67 40 chr15 21631846 21631921 -79748600 + MIR SINE MIR 93 169 -93 1568 203 60 8 chr15 21632904 21633274 -79747247 - MER74A LTR ERVL 0 558 170 989 185 28 4 chr15 21633339 21633546 -79746975 - MER74A LTR ERVL -360 262 2 211 203 102 0 chr15 21634908 21634967 -79745554 + L3b LINE CR1 1304 1368 -215 315 128 70 23 chr15 21636929 21637101 -79743420 + (TG)n Simple_repeat Simple_repeat 1 180 0 15954 28 23 1 chr15 21637227 21639914 -79740607 - L1PA3 LINE L1 -2 6153 3402 236 69 0 0 chr15 21639908 21639937 -79740584 + L1PA3 LINE L1 3394 3422 -2724 * 278 193 0 18 chr15 21642353 21642410 -79738111 - L1ME LINE L1 -535 5586 5531 462 294 73 104 chr15 21642840 21643292 -79737229 + L2 LINE L2 2832 3269 -44 186 43 0 0 chr15 21643442 21643465 -79737056 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 2333 119 0 0 chr15 21643465 21643775 -79736746 - AluSg SINE Alu 0 310 1 1440 218 0 14 chr15 21643777 21644070 -79736451 - AluJo SINE Alu -18 294 6 310 309 78 79 chr15 21644130 21644799 -79735722 - L1M4 LINE L1 -1488 4658 3991 3169 119 32 19 chr15 21644811 21645342 -79735179 - LOR1-int LTR ERV1 -5643 2477 1940 * 4545 106 25 21 chr15 21645341 21646093 -79734428 - LOR1-int LTR ERV1 -6323 1797 1043 912 137 63 30 chr15 21646086 21646266 -79734255 - LOR1-int LTR ERV1 -6603 1213 701 * 1296 148 27 5 chr15 21646251 21646474 -79734047 - LOR1-int LTR ERV1 -7528 592 365 2564 138 22 118 chr15 21646499 21647049 -79733472 - LOR1a LTR ERV1 0 497 1 690 200 0 58 chr15 21647049 21647239 -79733282 - L1MA7 LINE L1 -79 6416 6238 4636 172 46 15 chr15 21647545 21647772 -79732749 - L1MA7 LINE L1 -265 6230 6012 456 19 0 0 chr15 21647772 21647825 -79732696 + (TG)n Simple_repeat Simple_repeat 2 54 0 4636 172 46 15 chr15 21647825 21649155 -79731366 - L1MA7 LINE L1 -483 6012 4604 180 0 0 0 chr15 21649155 21649175 -79731346 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 4636 172 46 15 chr15 21649175 21649294 -79731227 - L1MA7 LINE L1 -1891 4604 4490 225 0 0 0 chr15 21649294 21649319 -79731202 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1103 232 4 8 chr15 21649329 21649570 -79730951 - AluJo SINE Alu -22 290 51 3019 123 7 7 chr15 21649634 21650064 -79730457 - MER57B LTR ERV1 -3 431 2 477 80 0 0 chr15 21650066 21650141 -79730380 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1225 192 8 27 chr15 21650190 21650451 -79730070 - L1MA7 LINE L1 -1944 4406 4151 14887 180 22 13 chr15 21650462 21650730 -79729791 - L1MA2 LINE L1 0 7723 7459 2242 134 132 5 chr15 21650730 21651110 -79729411 + MSTA LTR MaLR 1 428 0 14887 180 22 13 chr15 21651110 21655312 -79725209 - L1MA2 LINE L1 -264 7459 3217 2912 254 39 63 chr15 21655307 21655486 -79725035 - L1MA7 LINE L1 -3965 2385 2203 * 2000 102 49 0 chr15 21655486 21655770 -79724751 - AluSx SINE Alu -14 298 1 2912 254 39 63 chr15 21655770 21657542 -79722979 - L1MA7 LINE L1 -4147 2203 804 2261 304 36 24 chr15 21657690 21658543 -79721978 - L1MA7 LINE L1 -5520 761 2 2479 134 32 55 chr15 21659691 21660125 -79720396 + MSTC LTR MaLR 1 424 -4 21 0 0 0 chr15 21660658 21660679 -79719842 + AT_rich Low_complexity Low_complexity 1 21 0 2082 156 89 60 chr15 21660827 21661264 -79719257 - LTR47A LTR ERVL -1 451 2 391 248 70 78 chr15 21661270 21661500 -79719021 + L1M4 LINE L1 1 228 -6314 296 308 41 31 chr15 21661796 21661968 -79718553 + L1M4 LINE L1 543 938 -5708 1341 186 3 69 chr15 21662098 21662388 -79718133 + AluJo SINE Alu 3 273 -39 872 245 99 25 chr15 21662428 21662791 -79717730 + L1M4 LINE L1 852 1241 -5301 428 195 15 41 chr15 21662801 21662866 -79717655 - L1M2 LINE L1 -708 5475 5410 3537 171 54 17 chr15 21662866 21662907 -79717614 + L1MB4 LINE L1 5429 5467 -713 207 0 0 0 chr15 21662907 21662930 -79717591 + (TA)n Simple_repeat Simple_repeat 2 24 0 3537 171 54 17 chr15 21662930 21663610 -79716911 + L1MB4 LINE L1 5467 6179 -1 428 195 15 41 chr15 21663610 21663699 -79716822 - L1M2 LINE L1 -773 5410 5328 262 102 102 20 chr15 21663782 21663831 -79716690 + MER5A DNA MER1_type 9 61 -128 2095 94 4 7 chr15 21663876 21664151 -79716370 - AluSg SINE Alu -8 302 29 687 219 22 114 chr15 21664917 21665145 -79715376 + MER3 DNA MER1_type 3 209 0 257 240 0 0 chr15 21665102 21665152 -79715369 - MER3 DNA MER1_type -119 90 41 * 519 319 52 42 chr15 21665860 21666167 -79714354 - MLT1H LTR MaLR -239 310 1 259 322 88 59 chr15 21667074 21667347 -79713174 - L2 LINE L2 -2 3311 3031 439 235 111 12 chr15 21667675 21667837 -79712684 + Tigger8 DNA MER2_type 211 388 -278 230 263 13 0 chr15 21668190 21668266 -79712255 + (TA)n Simple_repeat Simple_repeat 2 78 0 589 321 20 13 chr15 21668374 21668599 -79711922 + MIR SINE MIR 23 252 -10 2149 166 37 21 chr15 21669757 21670190 -79710331 - L1MA7 LINE L1 -34 6257 5818 592 81 0 47 chr15 21670207 21670293 -79710228 - AluSg/x SINE Alu -11 299 218 306 73 0 0 chr15 21670474 21670515 -79710006 + (TG)n Simple_repeat Simple_repeat 2 42 0 2223 84 7 10 chr15 21670616 21670936 -79709585 + AluY SINE Alu 1 311 0 1012 169 13 56 chr15 21672728 21672837 -79707684 + L1MA8 LINE L1 6071 6166 -125 2318 74 3 7 chr15 21672837 21673134 -79707387 + AluY SINE Alu 1 296 -15 1012 169 13 56 chr15 21673134 21673255 -79707266 + L1MA8 LINE L1 6166 6291 0 24 0 0 0 chr15 21673257 21673281 -79707240 + AT_rich Low_complexity Low_complexity 1 24 0 224 213 0 0 chr15 21673684 21673731 -79706790 + GA-rich Low_complexity Low_complexity 2 48 0 420 264 101 71 chr15 21674429 21674766 -79705755 + L3 LINE CR1 1165 1511 -66 617 294 161 26 chr15 21674934 21675441 -79705080 - L2 LINE L2 -5 3308 2728 206 297 54 0 chr15 21677466 21677540 -79702981 + L2 LINE L2 2973 3050 -222 1547 199 39 14 chr15 21678826 21679108 -79701413 + AluJo SINE Alu 1 289 -13 495 153 163 0 chr15 21679162 21679260 -79701261 - Tigger3(Golem) DNA MER2_type -2915 114 1 273 280 58 79 chr15 21679267 21679373 -79701148 - L1MEd LINE L1 -4785 1344 1237 2130 139 0 0 chr15 21679373 21679682 -79700839 - AluSx SINE Alu -3 309 1 273 280 58 79 chr15 21679682 21679929 -79700592 - L1MEd LINE L1 -4892 1237 1007 241 326 34 11 chr15 21679915 21680004 -79700517 - L1MEd LINE L1 -5482 637 547 * 21 0 0 0 chr15 21681229 21681250 -79699271 + AT_rich Low_complexity Low_complexity 1 21 0 4166 174 67 35 chr15 21681997 21682851 -79697670 - L1MB8 LINE L1 -2 6176 5278 1938 144 0 3 chr15 21682851 21683135 -79697386 - AluJo SINE Alu -19 293 11 4166 174 67 35 chr15 21683135 21683314 -79697207 - L1MB8 LINE L1 -900 5278 5106 201 119 24 24 chr15 21683518 21683560 -79696961 + T-rich Low_complexity Low_complexity 4 45 0 565 158 87 8 chr15 21685528 21685655 -79694866 - MER3 DNA MER1_type -8 201 65 1986 128 0 0 chr15 21686182 21686456 -79694065 - AluSx SINE Alu -38 274 1 1174 141 0 10 chr15 21686492 21686684 -79693837 + Tigger7 DNA MER2_type 2298 2487 0 2021 99 53 30 chr15 21686693 21686995 -79693526 - AluSg SINE Alu -1 309 1 25 0 0 0 chr15 21687004 21687029 -79693492 + AT_rich Low_complexity Low_complexity 1 25 0 422 152 40 40 chr15 21687044 21687143 -79693378 + L1MB7 LINE L1 6077 6175 -9 1242 233 113 33 chr15 21687652 21688192 -79692329 - L1M4 LINE L1 -3401 2745 2163 843 148 0 40 chr15 21688208 21688384 -79692137 - Charlie5 DNA MER1_type 0 2612 2444 2146 103 14 7 chr15 21688386 21688676 -79691845 - AluSx SINE Alu -14 298 7 231 61 0 0 chr15 21688694 21688727 -79691794 + (GA)n Simple_repeat Simple_repeat 2 34 0 276 284 27 0 chr15 21690028 21690102 -79690419 - MIR SINE MIR -71 191 116 2096 89 7 0 chr15 21690344 21690615 -79689906 - AluSc SINE Alu 0 309 37 448 176 0 0 chr15 21691116 21691190 -79689331 + MLT1I LTR MaLR 336 409 0 25 0 0 0 chr15 21691573 21691598 -79688923 + AT_rich Low_complexity Low_complexity 1 25 0 514 307 50 39 chr15 21692653 21693011 -79687510 + L1ME4a LINE L1 5518 5879 -242 2151 106 0 58 chr15 21693604 21693933 -79686588 + AluSg SINE Alu 1 310 0 1766 184 0 19 chr15 21695665 21695975 -79684546 - AluJb SINE Alu -8 304 1 379 237 13 92 chr15 21696434 21696586 -79683935 - MER69A DNA AcHobo -1 176 37 234 0 0 0 chr15 21697225 21697251 -79683270 + (CAT)n Simple_repeat Simple_repeat 1 26 0 420 323 46 32 chr15 21697295 21697512 -79683009 - MIR SINE MIR -30 232 13 1548 153 8 4 chr15 21698145 21698380 -79682141 - MER46A DNA MER2_type 0 236 1 23 54 0 0 chr15 21698489 21698526 -79681995 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr15 21702725 21702746 -79677775 + AT_rich Low_complexity Low_complexity 1 21 0 1761 180 22 19 chr15 21702852 21703175 -79677346 - MSTA LTR MaLR -2 426 103 943 88 7 61 chr15 21703170 21703318 -79677203 + MSTA LTR MaLR 12 151 -277 * 297 56 0 0 chr15 21703428 21703464 -79677057 - MSTA LTR MaLR -392 36 1 3096 135 9 0 chr15 21704510 21704970 -79675551 - L1PA15 LINE L1 -2 6163 5700 2280 88 0 23 chr15 21706750 21707058 -79673463 - AluSc SINE Alu -8 301 1 819 153 0 0 chr15 21707627 21707745 -79672776 + FLAM_C SINE Alu 1 118 -15 673 122 0 43 chr15 21707746 21707934 -79672587 + (TA)n Simple_repeat Simple_repeat 1 180 0 829 139 0 0 chr15 21707947 21708069 -79672452 + FRAM SINE Alu 31 152 -24 2349 84 0 0 chr15 21708513 21708811 -79671710 + AluY SINE Alu 8 305 -6 2391 81 3 3 chr15 21709649 21709947 -79670574 + AluSp SINE Alu 1 298 -15 830 248 25 46 chr15 21711052 21711334 -79669187 - MLT1E2 LTR MaLR 0 626 351 1839 118 16 3 chr15 21711334 21711655 -79668866 - L1M1 LINE L1 -681 5622 5298 703 288 58 18 chr15 21711656 21711964 -79668557 - MLT1E2 LTR MaLR -274 352 29 2731 119 72 15 chr15 21711964 21712425 -79668096 - LTR45B LTR ERV1 0 489 3 703 288 58 18 chr15 21712425 21712443 -79668078 - MLT1E2 LTR MaLR -597 29 13 180 200 0 0 chr15 21714241 21714286 -79666235 + (CA)n Simple_repeat Simple_repeat 2 46 0 258 81 0 0 chr15 21716733 21716770 -79663751 + (CA)n Simple_repeat Simple_repeat 2 38 0 336 302 35 53 chr15 21719858 21720027 -79660494 - HAL1b LINE L1 -457 891 726 1167 270 33 2 chr15 21720690 21721083 -79659438 - L1M4 LINE L1 -1909 4237 3833 6892 56 3 122 chr15 21721110 21722162 -79658359 - L1PA7 LINE L1 -4 6150 5136 362 330 56 39 chr15 21722401 21722634 -79657887 - HAL1 LINE L1 -698 1809 1573 232 293 20 0 chr15 21722640 21722739 -79657782 - HAL1b LINE L1 -866 482 382 472 332 164 15 chr15 21722800 21723074 -79657447 - HAL1 LINE L1 -1091 1416 1102 335 257 100 0 chr15 21723077 21723094 -79657427 - L1MA10 LINE L1 -1 6333 6317 2524 227 66 59 chr15 21723094 21723598 -79656923 - L1ME1 LINE L1 -9 6157 5658 241 94 0 0 chr15 21723598 21723630 -79656891 - U2 snRNA snRNA -155 33 2 2524 227 66 59 chr15 21723630 21724745 -79655776 - L1ME1 LINE L1 -508 5658 4504 868 142 120 49 chr15 21724759 21724942 -79655579 - MER20 DNA MER1_type 0 219 24 330 222 15 89 chr15 21724971 21725018 -79655503 - L1ME1 LINE L1 -1640 4506 4457 2266 97 7 3 chr15 21725018 21725318 -79655203 - AluSp SINE Alu -12 301 1 330 222 15 89 chr15 21725318 21725405 -79655116 - L1ME1 LINE L1 -1689 4457 4382 2434 94 0 0 chr15 21725917 21726226 -79654295 + AluSg SINE Alu 1 309 -1 2403 80 0 3 chr15 21728180 21728482 -79652039 + AluY SINE Alu 1 301 -10 338 205 40 40 chr15 21728765 21728916 -79651605 + L1MB7 LINE L1 4477 4627 -1519 267 146 51 0 chr15 21728934 21729000 -79651521 - MLT2C2 LTR ERVL -2 462 417 2322 188 33 7 chr15 21729253 21729706 -79650815 + MLT1C LTR MaLR 3 467 0 3141 160 29 21 chr15 21730524 21731155 -79649366 + LTR51 LTR ERV1 1 636 -35 1074 132 3 5 chr15 21731159 21731439 -79649082 + MER4B LTR ERV1 1 317 -293 * 1149 139 81 14 chr15 21731430 21731653 -79648868 + MER4E LTR ERV1 531 768 -11 305 322 86 78 chr15 21731999 21732359 -79648162 + L1M4b LINE L1 340 702 -6157 417 221 0 0 chr15 21732369 21732455 -79648066 + L1M4b LINE L1 969 1054 -5805 949 172 0 0 chr15 21732455 21732600 -79647921 + AluSq/x SINE Alu 1 145 -168 291 245 5 20 chr15 21732628 21732733 -79647788 + FLAM_A SINE Alu 7 56 -76 635 103 0 0 chr15 21732770 21732857 -79647664 + MER4B LTR ERV1 30 116 -494 1023 221 4 4 chr15 21732857 21733101 -79647420 + L1MB7 LINE L1 4706 4949 -1197 300 220 0 0 chr15 21733103 21733162 -79647359 - L1 LINE L1 -843 5303 5245 2927 188 21 3 chr15 21733165 21733770 -79646751 - L1 LINE L1 -876 5270 4655 * 3085 228 30 40 chr15 21733765 21734401 -79646120 + L1MB7 LINE L1 4958 5568 -616 2421 68 0 7 chr15 21734401 21734697 -79645824 - AluY SINE Alu -15 296 3 3085 228 30 40 chr15 21734697 21735308 -79645213 + L1MB7 LINE L1 5568 6184 0 416 302 24 0 chr15 21735299 21735468 -79645053 + L1M4b LINE L1 2364 2536 -4602 * 998 171 37 5 chr15 21735467 21735683 -79644838 + L1MA6 LINE L1 5895 6117 -183 596 193 20 13 chr15 21735791 21735941 -79644580 + L1MA8 LINE L1 6139 6289 -2 25 0 0 0 chr15 21735975 21736000 -79644521 + AT_rich Low_complexity Low_complexity 1 25 0 211 217 0 0 chr15 21736585 21736631 -79643890 + (CTA)n Simple_repeat Simple_repeat 1 46 0 314 314 93 0 chr15 21736644 21736762 -79643759 - MIR SINE MIR -17 245 117 1036 168 16 0 chr15 21737217 21737408 -79643113 + MLT1A1 LTR MaLR 1 194 -171 367 258 110 19 chr15 21737452 21737607 -79642914 - MLT1H LTR MaLR -318 231 63 296 156 0 0 chr15 21738127 21738172 -79642349 - MLT1A1 LTR MaLR 0 365 321 24 0 0 0 chr15 21739369 21739393 -79641128 + AT_rich Low_complexity Low_complexity 1 24 0 251 156 0 22 chr15 21739979 21740024 -79640497 + L2 LINE L2 3220 3263 -9 2071 107 0 0 chr15 21740489 21740759 -79639762 + AluSc SINE Alu 1 270 -39 3853 163 44 13 chr15 21740802 21741551 -79638970 + LTR39 LTR ERV1 12 783 0 2330 88 7 0 chr15 21743054 21743349 -79637172 - AluSg SINE Alu -12 298 2 780 174 71 10 chr15 21743360 21743556 -79636965 - L1MD2 LINE L1 -1 6358 6151 228 111 0 0 chr15 21743558 21743594 -79636927 + (TG)n Simple_repeat Simple_repeat 2 37 0 26875 126 9 79 chr15 21743734 21749225 -79631296 - L1P LINE L1 -1026 5120 12 3310 240 71 32 chr15 21749261 21750375 -79630146 - L1M4 LINE L1 -2681 3701 2537 2167 125 0 0 chr15 21750375 21750663 -79629858 - AluSx SINE Alu -13 299 12 3310 240 71 32 chr15 21750663 21750873 -79629648 - L1M4 LINE L1 -3845 2537 2337 1479 185 0 38 chr15 21750905 21751192 -79629329 - AluJo SINE Alu -5 307 32 329 322 68 49 chr15 21751193 21751398 -79629123 - HAL1 LINE L1 -1480 1027 819 993 228 14 9 chr15 21752330 21752549 -79627972 + MER58A DNA MER1_type 2 221 -3 3724 233 31 8 chr15 21753317 21754487 -79626034 + L1MB8 LINE L1 3180 4375 -1771 3475 174 42 19 chr15 21754489 21755239 -79625282 + L1MB8 LINE L1 4892 5763 -415 2456 66 0 0 chr15 21755239 21755541 -79624980 + AluY SINE Alu 1 302 -9 3475 174 42 19 chr15 21755541 21755966 -79624555 + L1MB8 LINE L1 5763 6177 -1 642 286 127 9 chr15 21755991 21756313 -79624208 - MLT1J LTR MaLR -49 462 103 1907 118 66 3 chr15 21756313 21756602 -79623919 - AluSg SINE Alu -3 307 1 27 62 0 0 chr15 21756793 21756841 -79623680 + AT_rich Low_complexity Low_complexity 1 48 0 28 48 0 0 chr15 21757492 21757534 -79622987 + AT_rich Low_complexity Low_complexity 1 42 0 338 263 103 0 chr15 21757725 21757822 -79622699 + MIR SINE MIR 42 147 -77 206 362 78 52 chr15 21758626 21758897 -79621624 - L2 LINE L2 -2 3270 2993 26 0 0 0 chr15 21759344 21759370 -79621151 + AT_rich Low_complexity Low_complexity 1 26 0 1960 118 36 4 chr15 21759754 21760034 -79620487 - AluSx SINE Alu -23 289 1 326 200 38 0 chr15 21760950 21761043 -79619478 - LTR16A1 LTR ERVL 0 457 377 2294 114 16 147 chr15 21761344 21761894 -79618627 + LTR12 LTR ERV1 1 478 -236 605 235 39 11 chr15 21761895 21762074 -79618447 - MLT1A1 LTR MaLR -176 189 6 1975 165 63 24 chr15 21762761 21762802 -79617719 - MSTA LTR MaLR 0 428 390 2072 59 4 15 chr15 21762802 21763072 -79617449 + AluY SINE Alu 39 305 -6 1975 165 63 24 chr15 21763072 21763442 -79617079 - MSTA LTR MaLR -38 390 1 208 293 26 78 chr15 21764153 21764166 -79616355 - MIR SINE MIR -32 230 218 2750 26 0 0 chr15 21764166 21764475 -79616046 - AluY SINE Alu -2 309 1 208 293 26 78 chr15 21764475 21764577 -79615944 - MIR SINE MIR -44 218 121 204 289 0 40 chr15 21764702 21764778 -79615743 - L2 LINE L2 -164 3108 3036 711 273 133 7 chr15 21764984 21765255 -79615266 - LTR40a LTR ERVL -148 371 67 1044 286 87 21 chr15 21766888 21767405 -79613116 + L1MCb LINE L1 5 555 -5490 926 190 37 9 chr15 21767515 21767731 -79612790 + L1MCb LINE L1 570 791 -5254 2277 241 115 38 chr15 21767967 21769521 -79611000 + L1MCb LINE L1 786 2637 -4108 315 213 0 0 chr15 21769524 21769604 -79610917 + (TA)n Simple_repeat Simple_repeat 1 80 0 324 300 0 0 chr15 21769605 21769695 -79610826 - L1MC4 LINE L1 -1339 6703 6614 1207 261 46 14 chr15 21769707 21770189 -79610332 + L1MCb LINE L1 2618 3114 -3450 814 244 116 7 chr15 21770190 21770465 -79610056 - L1M4 LINE L1 -1195 5449 5145 2193 256 57 19 chr15 21770478 21770541 -79609980 - L1M4 LINE L1 -1892 4752 4693 1960 131 14 7 chr15 21770541 21770832 -79609689 + AluSx SINE Alu 1 293 -19 2193 256 57 19 chr15 21770832 21771680 -79608841 - L1M4 LINE L1 -1951 4693 3806 838 261 36 63 chr15 21771681 21772175 -79608346 - L1M4 LINE L1 -5146 1396 916 906 189 71 0 chr15 21772235 21772404 -79608117 - AluSg/x SINE Alu -13 299 119 2234 131 123 5 chr15 21773392 21773775 -79606746 - MSTA LTR MaLR 0 428 1 1152 77 21 0 chr15 21774437 21774580 -79605941 + AluYb8 SINE Alu 5 150 -168 855 167 0 0 chr15 21775033 21775165 -79605356 + FLAM_C SINE Alu 2 133 0 320 212 59 12 chr15 21776339 21776424 -79604097 + MIR SINE MIR 84 172 -90 1475 185 28 11 chr15 21776718 21777081 -79603440 + Looper DNA T2_type 2 370 -1188 1021 193 106 0 chr15 21777084 21777302 -79603219 + MLT1E2 LTR MaLR 1 241 -385 19618 165 28 6 chr15 21777890 21785054 -79595467 + L1MA2 LINE L1 12 7332 -391 211 281 12 61 chr15 21785068 21785150 -79595371 + MIR SINE MIR 88 165 -97 22 56 0 0 chr15 21785175 21785211 -79595310 + AT_rich Low_complexity Low_complexity 1 36 0 3344 204 119 15 chr15 21786508 21787532 -79592989 - L1MC4a LINE L1 -1 7807 6677 414 267 37 47 chr15 21787533 21787724 -79592797 - L2 LINE L2 -26 3287 3099 236 346 13 0 chr15 21787808 21787886 -79592635 - L2 LINE L2 -239 3074 2996 917 194 26 38 chr15 21787888 21788201 -79592320 - MLT1A2 LTR MaLR 0 374 1 1030 291 143 27 chr15 21788222 21788775 -79591746 - L2 LINE L2 -337 2977 2361 204 250 29 44 chr15 21788833 21788901 -79591620 + MIR SINE MIR 195 261 -1 2150 120 3 7 chr15 21789503 21789802 -79590719 + AluSx SINE Alu 1 298 -14 1499 269 120 43 chr15 21789987 21790222 -79590299 - HAL1 LINE L1 -16 2491 2276 450 0 0 0 chr15 21790222 21790272 -79590249 + (CA)n Simple_repeat Simple_repeat 1 50 0 1499 269 120 43 chr15 21790272 21790857 -79589664 - HAL1 LINE L1 -231 2276 1738 2220 25 79 7 chr15 21790857 21791134 -79589387 + AluY SINE Alu 1 297 -14 1499 269 120 43 chr15 21791134 21791648 -79588873 - HAL1 LINE L1 -769 1738 1053 2129 110 28 0 chr15 21791651 21791941 -79588580 - AluSx SINE Alu -14 298 1 3502 152 57 42 chr15 21791944 21792721 -79587800 - L1MC1 LINE L1 -12 6321 5534 1207 282 71 63 chr15 21792751 21793387 -79587134 - HAL1 LINE L1 -1478 1029 399 504 0 0 0 chr15 21793387 21793443 -79587078 + (TC)n Simple_repeat Simple_repeat 2 57 0 180 0 0 0 chr15 21793448 21793468 -79587053 + (TG)n Simple_repeat Simple_repeat 1 20 0 1207 282 71 63 chr15 21793468 21793740 -79586781 - HAL1 LINE L1 -2111 396 108 7215 188 113 51 chr15 21794074 21794408 -79586113 - L1MC3 LINE L1 -222 7563 7251 262 212 35 12 chr15 21794408 21794493 -79586028 - MLT1F1 LTR MaLR -436 131 45 7215 188 113 51 chr15 21794493 21794950 -79585571 - L1MC3 LINE L1 -534 7251 6824 210 37 0 0 chr15 21794950 21794977 -79585544 + (CA)n Simple_repeat Simple_repeat 2 28 0 7215 188 113 51 chr15 21794977 21796214 -79584307 - L1MC3 LINE L1 -961 6824 5317 320 203 7 105 chr15 21796224 21796367 -79584154 - L1MC4 LINE L1 0 8042 7914 246 239 45 23 chr15 21796452 21796540 -79583981 - L1MC4 LINE L1 -152 7890 7801 843 254 84 4 chr15 21796643 21796918 -79583603 - L1MC4 LINE L1 -411 7631 7335 * 1678 210 75 10 chr15 21796907 21797402 -79583119 - L1MDa LINE L1 -4441 2099 1573 * 4019 221 42 36 chr15 21797397 21798677 -79581844 - L1MC3 LINE L1 -1168 4978 3691 804 249 47 16 chr15 21798683 21798940 -79581581 + MLT1C LTR MaLR 61 325 -142 336 288 80 16 chr15 21799269 21799394 -79581127 + L2 LINE L2 3178 3310 -3 842 169 14 0 chr15 21801355 21801487 -79579034 + BC200 scRNA scRNA 1 137 -63 2396 106 3 0 chr15 21801487 21801799 -79578722 + AluSp SINE Alu 1 313 0 2807 168 82 5 chr15 21804936 21805533 -79574988 - MER73 LTR ERVL -1 643 1 506 200 23 31 chr15 21806071 21806201 -79574320 + MER4D LTR ERV1 775 903 0 195 276 200 55 chr15 21806312 21806457 -79574064 + MIR3 SINE MIR 15 180 -28 890 112 7 13 chr15 21806573 21806725 -79573796 + L1MA10 LINE L1 6180 6330 -4 2389 132 38 2 chr15 21806872 21807289 -79573232 + LTR23 LTR ERV1 1 432 -5 1440 122 90 8 chr15 21807837 21808082 -79572439 - LTR23 LTR ERV1 -12 425 161 761 151 86 0 chr15 21808153 21808292 -79572229 - LTR23 LTR ERV1 -286 151 1 343 109 315 33 chr15 21808304 21808396 -79572125 + LTR48B LTR ERV1 1 118 -669 * 1129 113 20 56 chr15 21808393 21808446 -79572075 + LTR23 LTR ERV1 250 303 -134 2198 117 0 0 chr15 21808446 21808746 -79571775 + AluSc SINE Alu 1 300 -9 1129 113 20 56 chr15 21808746 21808887 -79571634 + LTR23 LTR ERV1 303 437 0 1337 255 97 28 chr15 21808935 21809445 -79571076 + LTR48B LTR ERV1 117 644 0 3586 182 22 34 chr15 21809721 21810435 -79570086 - MER50 LTR ERV1 -28 706 1 2651 174 86 24 chr15 21810472 21811040 -79569481 - LTR51 LTR ERV1 0 671 65 925 103 35 6 chr15 21811040 21811214 -79569307 + CT-rich Low_complexity Low_complexity 2 180 0 2651 174 86 24 chr15 21811214 21811227 -79569294 - LTR51 LTR ERV1 -606 65 54 4263 115 14 36 chr15 21811255 21811923 -79568598 - L1PA13 LINE L1 -23 6140 5488 927 126 0 0 chr15 21811910 21812053 -79568468 - L1PA13 LINE L1 -1792 4354 4212 * 4162 152 43 14 chr15 21812048 21812957 -79567564 - L1P4 LINE L1 -663 5498 4572 4487 224 30 49 chr15 21813059 21813890 -79566631 - L1MC/D LINE L1 -603 5639 4860 1523 164 0 85 chr15 21813890 21814207 -79566314 + AluJo SINE Alu 1 290 -22 4487 224 30 49 chr15 21814207 21815093 -79565428 - L1MC/D LINE L1 -1382 4860 3959 293 224 33 86 chr15 21815099 21815251 -79565270 + L1ME3A LINE L1 6015 6158 -12 363 304 101 22 chr15 21815305 21815621 -79564900 + HAL1 LINE L1 1431 1771 -736 1379 64 23 0 chr15 21816685 21816856 -79563665 + AluY SINE Alu 124 298 -13 1753 206 47 113 chr15 21817627 21818184 -79562337 + MER77 LTR ERV1 1 520 -85 10582 178 24 6 chr15 21818184 21819329 -79561192 + L1MA7 LINE L1 3232 4355 -1936 225 0 0 0 chr15 21819329 21819354 -79561167 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 10582 178 24 6 chr15 21819354 21821204 -79559317 + L1MA7 LINE L1 4355 6281 -10 621 321 46 29 chr15 21821213 21821736 -79558785 + HAL1b LINE L1 70 601 -747 299 259 60 0 chr15 21822143 21822259 -79558262 + Charlie8 DNA MER1_type 142 264 -2153 217 106 21 21 chr15 21822739 21822786 -79557735 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 3300 239 80 26 chr15 21823208 21824465 -79556056 + L1MDb LINE L1 358 1567 -4839 2574 229 15 28 chr15 21824462 21824633 -79555888 - L1M4 LINE L1 -814 5750 5578 * 4011 176 16 53 chr15 21824633 21825316 -79555205 - L1PA13 LINE L1 -1 6162 5505 2574 229 15 28 chr15 21825316 21825813 -79554708 - L1M4 LINE L1 -986 5578 5091 * 3753 252 67 17 chr15 21825809 21827210 -79553311 - L1MCa LINE L1 -2659 3905 2474 399 145 0 79 chr15 21827230 21827615 -79552906 + (TA)n Simple_repeat Simple_repeat 1 354 0 2329 224 167 17 chr15 21827618 21828749 -79551772 - L1MCa LINE L1 -4263 2482 1076 2110 177 47 42 chr15 21828751 21828977 -79551544 - MSTB1 LTR MaLR 0 432 209 4480 109 23 68 chr15 21828977 21829226 -79551295 - L1MA3 LINE L1 0 6305 6046 2117 104 24 3 chr15 21829226 21829515 -79551006 - AluSc SINE Alu -14 295 1 4480 109 23 68 chr15 21829515 21829862 -79550659 - L1MA3 LINE L1 -259 6046 5747 2344 99 0 3 chr15 21829862 21830164 -79550357 - AluSx SINE Alu -11 301 1 4480 109 23 68 chr15 21830164 21830317 -79550204 - L1MA3 LINE L1 -558 5747 5589 2110 177 47 42 chr15 21830317 21830520 -79550001 - MSTB1 LTR MaLR -223 209 1 1512 257 88 94 chr15 21830521 21830664 -79549857 - L1MCa LINE L1 -4969 1076 934 2042 118 13 10 chr15 21830664 21830968 -79549553 - AluSc SINE Alu -4 305 1 1512 257 88 94 chr15 21830968 21831832 -79548689 - L1MCa LINE L1 -5111 934 75 208 296 56 64 chr15 21831857 21831982 -79548539 + L2 LINE L2 2031 2154 -1160 386 22 0 0 chr15 21832201 21832246 -79548275 - tRNA-Arg-CGC tRNA tRNA -31 45 1 614 82 0 0 chr15 21832547 21832620 -79547901 - AluSg/x SINE Alu -23 287 215 2456 78 0 3 chr15 21832920 21833229 -79547292 - AluY SINE Alu -3 308 1 249 204 0 0 chr15 21833291 21833340 -79547181 + L2 LINE L2 3265 3313 0 2442 78 0 19 chr15 21834144 21834453 -79546068 - AluY SINE Alu -8 303 1 2170 100 0 13 chr15 21834917 21835216 -79545305 - AluSx SINE Alu -17 295 1 192 77 0 0 chr15 21835231 21835257 -79545264 + (A)n Simple_repeat Simple_repeat 1 26 0 583 243 46 7 chr15 21835258 21835410 -79545111 + MIR SINE MIR 104 261 -1 2297 103 3 6 chr15 21836131 21836442 -79544079 + AluSg SINE Alu 1 310 0 198 0 0 0 chr15 21837087 21837109 -79543412 + (T)n Simple_repeat Simple_repeat 1 22 0 435 262 97 7 chr15 21837420 21837565 -79542956 - MER5B DNA MER1_type -14 164 7 281 109 18 0 chr15 21838744 21838799 -79541722 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 2233 108 3 3 chr15 21838811 21839116 -79541405 - AluSg SINE Alu -5 305 1 780 218 97 24 chr15 21839570 21839735 -79540786 - AluJo SINE Alu -32 280 104 15435 195 25 13 chr15 21839860 21839887 -79540634 - L1PA13 LINE L1 -1769 5028 5003 2028 154 0 0 chr15 21839887 21840198 -79540323 - AluSx SINE Alu -1 311 1 15435 195 25 13 chr15 21840198 21840779 -79539742 - L1PA13 LINE L1 -1794 5003 4430 2360 82 0 0 chr15 21840779 21841073 -79539448 - AluY SINE Alu -17 294 1 15435 195 25 13 chr15 21841073 21843498 -79537023 - L1PA13 LINE L1 -2367 4430 1913 2224 106 0 0 chr15 21843498 21843781 -79536740 - AluSx SINE Alu -29 283 1 15435 195 25 13 chr15 21843781 21845527 -79534994 - L1PA13 LINE L1 -4884 1913 189 1559 144 158 7 chr15 21845527 21845825 -79534696 - MSTA LTR MaLR -85 343 1 1850 182 9 6 chr15 21846121 21846456 -79534065 + L1MC1 LINE L1 5991 6326 -7 211 259 19 0 chr15 21846755 21846809 -79533712 - MIR3 SINE MIR -21 187 133 276 71 0 0 chr15 21846915 21846957 -79533564 - LTR23 LTR ERV1 -5 432 391 1325 188 4 9 chr15 21846957 21847186 -79533335 + AluJo SINE Alu 1 228 -84 1085 143 36 15 chr15 21847187 21847383 -79533138 - LTR56 LTR ERV1 -245 200 1 1587 208 0 16 chr15 21847724 21848032 -79532489 - AluJo SINE Alu -9 303 1 2520 163 71 2 chr15 21848234 21848669 -79531852 - LTR24 LTR ERV1 -2 465 1 1873 213 85 30 chr15 21849162 21849599 -79530922 - LOR1b LTR ERV1 0 461 1 684 303 40 23 chr15 21850631 21850978 -79529543 - MLT1J LTR MaLR -145 366 14 2681 148 7 2 chr15 21851109 21851548 -79528973 + MER41B LTR ERV1 157 597 -38 4116 133 98 3 chr15 21852093 21852749 -79527772 - LTR62 LTR ERVK -1 718 1 394 291 102 5 chr15 21852967 21853163 -79527358 + L2 LINE L2 1769 1983 -1331 232 303 141 28 chr15 21853166 21853417 -79527104 + L2 LINE L2 2964 3247 -25 249 370 7 14 chr15 21853814 21853960 -79526561 - MARNA DNA Mariner -355 231 87 653 152 0 0 chr15 21855917 21856009 -79524512 - AluJ/FLAM SINE Alu -219 93 2 240 283 168 9 chr15 21856552 21856665 -79523856 - LTR33 LTR ERVL 0 521 391 260 257 79 10 chr15 21856753 21856854 -79523667 - LTR33 LTR ERVL -253 268 161 27 73 0 0 chr15 21857637 21857692 -79522829 + AT_rich Low_complexity Low_complexity 1 55 0 1162 306 78 35 chr15 21857707 21858286 -79522235 - HERVL LTR ERVL -2784 2870 2267 328 339 69 16 chr15 21858559 21858748 -79521773 - HERVL LTR ERVL -3068 1928 1730 265 188 16 16 chr15 21859079 21859143 -79521378 + L1MC2 LINE L1 1127 1190 -5233 259 163 0 0 chr15 21859195 21859238 -79521283 + L1M4 LINE L1 3906 3948 -2198 1046 17 0 0 chr15 21859277 21859394 -79521127 - AluY SINE Alu -17 294 178 524 252 63 43 chr15 21859398 21859958 -79520563 + L1MC2 LINE L1 1283 2190 -4751 * 927 226 84 70 chr15 21859954 21860440 -79520081 + L1MC2 LINE L1 3252 3744 -3197 424 277 0 0 chr15 21860443 21860537 -79519984 + L1MC2 LINE L1 4524 4617 -2324 5507 185 53 50 chr15 21860541 21862888 -79517633 + L1MC2 LINE L1 4678 7017 -122 2129 97 7 0 chr15 21862888 21863166 -79517355 + AluSp SINE Alu 1 280 -33 252 0 0 0 chr15 21863168 21863196 -79517325 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5507 185 53 50 chr15 21863196 21863323 -79517198 + L1MC2 LINE L1 7017 7139 0 1255 249 50 38 chr15 21863321 21863904 -79516617 + L1M4 LINE L1 2933 3522 -2624 * 344 250 56 62 chr15 21863897 21864041 -79516480 + L1ME1 LINE L1 5851 5993 -173 * 216 250 0 0 chr15 21864169 21864217 -79516304 + MIR SINE MIR 86 133 -129 1362 133 73 4 chr15 21865228 21865476 -79515045 - L1MA5 LINE L1 0 6300 6036 339 25 0 0 chr15 21865495 21865535 -79514986 + (TA)n Simple_repeat Simple_repeat 2 41 0 289 348 37 15 chr15 21865810 21865945 -79514576 - MIR SINE MIR -90 172 35 735 256 26 30 chr15 21866222 21866407 -79514114 + MIR SINE MIR 11 196 -66 2020 96 52 4 chr15 21866407 21866677 -79513844 - AluSc SINE Alu -26 283 1 735 256 26 30 chr15 21866677 21866725 -79513796 + MIR SINE MIR 196 243 -19 398 320 31 8 chr15 21869911 21870039 -79510482 + MIR3 SINE MIR 51 181 -27 241 278 160 11 chr15 21870560 21870693 -79509828 + MIR SINE MIR 36 188 -68 216 300 92 8 chr15 21870776 21870896 -79509625 + MIR SINE MIR 53 182 -80 275 236 164 55 chr15 21872849 21872959 -79507562 + L2 LINE L2 3192 3313 0 3133 248 49 42 chr15 21873270 21874469 -79506052 + L1MC4 LINE L1 2724 3931 -2215 2390 227 73 61 chr15 21874575 21875383 -79505138 + L1MC4 LINE L1 4362 4696 -1450 2341 100 3 3 chr15 21875383 21875693 -79504828 + AluY SINE Alu 1 310 -1 2390 227 73 61 chr15 21875693 21876400 -79504121 + L1MC4 LINE L1 4696 5393 -753 359 262 37 47 chr15 21876420 21876527 -79503994 - MER5A DNA MER1_type -68 121 16 487 273 51 23 chr15 21876874 21877050 -79503471 + MIR SINE MIR 82 262 0 729 178 0 0 chr15 21877590 21877697 -79502824 - AluJb SINE Alu -69 243 137 1167 186 0 0 chr15 21877777 21877970 -79502551 - MER3 DNA MER1_type -6 203 11 2098 165 143 16 chr15 21880617 21881065 -79499456 + MLT1D LTR MaLR 1 505 0 218 240 0 60 chr15 21881284 21881334 -79499187 + MIR SINE MIR 27 73 -135 491 174 24 30 chr15 21881756 21881923 -79498598 + GA-rich Low_complexity Low_complexity 4 169 0 728 98 0 72 chr15 21881925 21882118 -79498403 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 521 179 14 14 chr15 21882119 21882259 -79498262 + GA-rich Low_complexity Low_complexity 2 141 0 1811 168 153 32 chr15 21883687 21884098 -79496423 + LOR1b LTR ERV1 1 461 0 2665 104 0 57 chr15 21886264 21886647 -79493874 + THE1B LTR MaLR 4 364 0 1505 136 13 88 chr15 21886679 21886996 -79493525 + L1MA10 LINE L1 6040 6332 -2 276 100 0 0 chr15 21887331 21887371 -79493150 + (TG)n Simple_repeat Simple_repeat 1 40 0 21 36 0 0 chr15 21887448 21887476 -79493045 + AT_rich Low_complexity Low_complexity 1 28 0 3038 261 52 37 chr15 21888458 21889257 -79491264 - L2 LINE L2 0 3313 2496 1531 168 53 43 chr15 21889257 21889560 -79490961 - AluJo SINE Alu -6 306 1 3038 261 52 37 chr15 21889560 21890055 -79490466 - L2 LINE L2 -817 2496 2010 232 248 37 55 chr15 21890180 21890289 -79490232 - MIR SINE MIR -54 208 102 2612 50 0 0 chr15 21890289 21890592 -79489929 + AluY SINE Alu 1 303 -8 534 222 85 85 chr15 21890993 21891241 -79489280 + MIR SINE MIR 2 249 -13 615 239 56 0 chr15 21892462 21892642 -79487879 + HAL1 LINE L1 44 233 -2274 3259 239 109 68 chr15 21892706 21893577 -79486944 + HAL1 LINE L1 644 1478 -1029 2201 119 0 6 chr15 21893577 21893888 -79486633 + AluSc SINE Alu 1 309 0 3259 239 109 68 chr15 21893888 21894602 -79485919 + HAL1 LINE L1 1478 2313 -194 1990 150 0 0 chr15 21894602 21894902 -79485619 + AluSp SINE Alu 1 300 -13 3259 239 109 68 chr15 21894902 21895106 -79485415 + HAL1 LINE L1 2313 2507 0 812 274 4 35 chr15 21895465 21895724 -79484797 + L1MB8 LINE L1 5925 6175 -3 2701 42 0 0 chr15 21896356 21896667 -79483854 - AluY SINE Alu 0 311 1 298 333 0 0 chr15 21897074 21897233 -79483288 + (CATCC)n Simple_repeat Simple_repeat 3 161 0 197 320 156 29 chr15 21897379 21897623 -79482898 + L2 LINE L2 1638 1912 -1402 270 364 128 17 chr15 21897849 21898209 -79482312 + L2 LINE L2 2290 2689 -625 219 319 52 44 chr15 21898537 21898672 -79481849 + L2 LINE L2 2948 3083 -189 2592 65 0 0 chr15 21898781 21899091 -79481430 - AluY SINE Alu -1 310 1 3839 168 18 3 chr15 21950305 21951408 -79429113 + L1PBa LINE L1 2172 3349 -3513 1677 201 65 56 chr15 21952681 21953129 -79427392 + MLT1D LTR MaLR 54 505 0 286 211 0 13 chr15 21953869 21953945 -79426576 - L1ME4a LINE L1 0 6121 6047 1585 243 81 26 chr15 21954191 21954648 -79425873 - MLT1J LTR MaLR -25 486 5 1146 190 164 0 chr15 21955299 21955811 -79424710 + L1MC4 LINE L1 7414 8037 -5 5417 48 1 0 chr15 21956717 21957400 -79423121 - L1P LINE L1 -893 5253 4570 4422 41 5 2 chr15 21957399 21957954 -79422567 + L1P LINE L1 3242 3798 -2348 * 266 322 33 0 chr15 21958059 21958149 -79422372 + MLT1L LTR MaLR 299 391 -224 2988 135 9 2 chr15 21959099 21959530 -79420991 - MER57B LTR ERV1 0 434 1 1541 108 129 0 chr15 21959531 21959763 -79420758 - MER57B-int LTR ERV1 -2 7535 7274 748 144 24 8 chr15 21959763 21959888 -79420633 - LTR54B LTR ERV1 -369 129 3 2946 94 3 0 chr15 21960335 21960698 -79419823 + THE1B LTR MaLR 1 364 0 670 257 19 27 chr15 21960894 21961151 -79419370 - L1M4 LINE L1 -3016 3130 2876 553 217 63 57 chr15 21961332 21961507 -79419014 - MER5B DNA MER1_type 0 178 3 566 263 27 21 chr15 21963207 21963393 -79417128 + MLT1A1 LTR MaLR 179 365 0 324 260 48 10 chr15 21963393 21963497 -79417024 + MIR SINE MIR 155 262 0 4605 236 35 22 chr15 21964666 21965162 -79415359 + L1MB3 LINE L1 3056 3544 -2602 2229 91 10 0 chr15 21965162 21965458 -79415063 - AluY SINE Alu -12 299 1 4605 236 35 22 chr15 21965458 21966353 -79414168 + L1MB3 LINE L1 3544 4464 -1682 508 143 0 0 chr15 21966512 21966582 -79413939 - AluSq/x SINE Alu -197 116 47 587 128 0 11 chr15 21966915 21967009 -79413512 - LTR12 LTR ERV1 -4 710 618 368 159 0 0 chr15 21967019 21967088 -79413433 - LTR30 LTR ERV1 -102 620 552 758 152 15 28 chr15 21967204 21967360 -79413161 - LTR12 LTR ERV1 -480 1683 94 247 250 0 0 chr15 21967364 21967416 -79413105 - LTR30 LTR ERV1 -670 52 1 388 295 83 26 chr15 21967632 21967825 -79412696 + L2 LINE L2 1849 2052 -1262 433 330 77 0 chr15 21968478 21968660 -79411861 + MIR SINE MIR 2 197 -65 392 124 21 103 chr15 21968665 21968762 -79411759 - LOR1a LTR ERV1 0 497 409 234 0 0 0 chr15 21968762 21968788 -79411733 + (T)n Simple_repeat Simple_repeat 1 26 0 1366 216 77 61 chr15 21970196 21970640 -79409881 - MLT1C LTR MaLR -5 462 12 1247 237 158 54 chr15 21971248 21971806 -79408715 + MLT1E3 LTR MaLR 9 624 0 2071 178 31 3 chr15 21972343 21972698 -79407823 - MLT1A1 LTR MaLR 0 365 1 4820 180 24 30 chr15 21973171 21974059 -79406462 + L1MB3 LINE L1 4442 5333 -850 2528 66 0 3 chr15 21974059 21974361 -79406160 + AluY SINE Alu 1 301 -10 4820 180 24 30 chr15 21974361 21975207 -79405314 + L1MB3 LINE L1 5333 6183 0 1050 241 63 62 chr15 21978072 21978313 -79402208 + L1MEc LINE L1 2087 2326 -3889 2745 197 12 59 chr15 21978313 21978978 -79401543 - LTR27 LTR ERV1 0 636 3 1050 241 63 62 chr15 21978978 21979485 -79401036 + L1MEc LINE L1 2326 2885 -3330 5842 130 15 29 chr15 21979587 21979985 -79400536 - L1PB1 LINE L1 -1 6150 5748 369 109 0 0 chr15 21979985 21980040 -79400481 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 5842 130 15 29 chr15 21980040 21980874 -79399647 - L1PB1 LINE L1 -403 5748 4934 3852 217 24 18 chr15 21980889 21981879 -79398642 - L1M4 LINE L1 -743 5403 4435 1821 153 7 17 chr15 21981879 21982180 -79398341 - AluJo SINE Alu -14 298 1 3852 217 24 18 chr15 21982180 21982250 -79398271 - L1M4 LINE L1 -1711 4435 4367 400 233 107 0 chr15 21982587 21982690 -79397831 + MER53 DNA DNA 1 114 -75 489 126 0 135 chr15 21983502 21983613 -79396908 - L1MA6 LINE L1 -317 5983 5888 1484 178 16 42 chr15 21983613 21983798 -79396723 + L1MA6 LINE L1 5993 6168 -132 2390 95 0 0 chr15 21983798 21984102 -79396419 + AluSc SINE Alu 1 304 -5 1484 178 16 42 chr15 21984102 21984225 -79396296 + L1MA6 LINE L1 6168 6293 -7 288 272 107 19 chr15 21984382 21984485 -79396036 + L2 LINE L2 3198 3309 -4 2479 74 0 0 chr15 21984511 21984807 -79395714 + AluY SINE Alu 1 296 -15 202 182 0 0 chr15 21984817 21984850 -79395671 + (CA)n Simple_repeat Simple_repeat 2 34 0 1678 188 3 25 chr15 21985717 21986036 -79394485 + AluJo SINE Alu 1 312 0 2334 162 17 2 chr15 21986308 21986715 -79393806 + L1MC3 LINE L1 6686 7098 -687 234 231 19 0 chr15 21986716 21986768 -79393753 + MLT1F1 LTR MaLR 37 89 -478 194 329 25 13 chr15 21987259 21987338 -79393183 - L2 LINE L2 -3 3269 3190 3091 155 53 87 chr15 21987338 21988049 -79392472 + L1M4c LINE L1 12 698 -5686 283 65 43 22 chr15 21988072 21988118 -79392403 + AluSq/x SINE Alu 89 135 -168 2388 80 3 3 chr15 21988118 21988419 -79392102 + AluY SINE Alu 1 301 -10 1910 121 26 42 chr15 21988428 21988734 -79391787 + AluSx SINE Alu 2 302 -10 7208 153 21 17 chr15 21988734 21990057 -79390464 + L1M4c LINE L1 892 2219 -4165 2943 153 45 60 chr15 21990162 21990361 -79390160 - L1MA9 LINE L1 -314 5998 5797 1430 176 0 8 chr15 21990361 21990599 -79389922 + MER46A DNA MER2_type 1 236 0 2943 153 45 60 chr15 21990599 21990612 -79389909 - L1MA9 LINE L1 -515 5797 5785 2251 108 0 10 chr15 21990612 21990926 -79389595 - AluY SINE Alu 0 311 1 2943 153 45 60 chr15 21990926 21991231 -79389290 - L1MA9 LINE L1 -527 5785 5489 2287 85 7 3 chr15 21991231 21991526 -79388995 - AluSq SINE Alu -17 296 1 2943 153 45 60 chr15 21991526 21991634 -79388887 - L1MA9 LINE L1 -823 5489 5381 394 272 76 25 chr15 21992195 21992353 -79388168 - MLT1K LTR MaLR -26 562 397 1228 226 6 21 chr15 21992490 21992828 -79387693 - L1MA9 LINE L1 -745 5401 5095 * 6118 251 70 31 chr15 21992816 21995504 -79385017 - L1M4b LINE L1 -1754 5203 2480 1726 241 85 56 chr15 21995664 21996878 -79383643 - L1M4b LINE L1 -4536 2423 1205 261 188 42 0 chr15 21997078 21997126 -79383395 - L1M4b LINE L1 -5632 1227 1178 2880 264 50 39 chr15 21997298 21998277 -79382244 - L1M4b LINE L1 -5635 1224 11 1685 155 83 44 chr15 21998287 21998649 -79381872 + LOR1b LTR ERV1 1 376 -85 2268 98 3 3 chr15 21998651 21998958 -79381563 + AluY SINE Alu 1 307 -4 21 57 0 0 chr15 21999156 21999191 -79381330 + AT_rich Low_complexity Low_complexity 1 35 0 1624 151 0 0 chr15 21999193 21999432 -79381089 + AluY SINE Alu 1 239 -72 1806 87 56 12 chr15 22000500 22000752 -79379769 + AluSg SINE Alu 32 294 -16 2840 105 11 3 chr15 22000790 22001162 -79379359 - THE1C LTR MaLR 0 375 1 183 361 148 0 chr15 22003109 22003231 -79377290 + L3 LINE CR1 1150 1289 -288 244 257 142 26 chr15 22003290 22003403 -79377118 - MIR SINE MIR -62 200 75 6653 67 1 2 chr15 22003458 22004307 -79376214 - L1PA8 LINE L1 -4 6168 5321 2950 115 2 2 chr15 22004305 22004747 -79375774 + L1P LINE L1 4917 5358 -788 * 1855 208 79 24 chr15 22004964 22005420 -79375101 - MLT1D LTR MaLR 0 505 25 1112 264 35 9 chr15 22006865 22007180 -79373341 + MER46C DNA MER2_type 15 337 -1 409 185 76 0 chr15 22009314 22009406 -79371115 - MER53 DNA DNA -74 115 17 * 426 131 107 0 chr15 22009328 22009412 -79371109 + MER53 DNA DNA 96 188 -1 1860 117 15 0 chr15 22009897 22010170 -79370351 - AluSc SINE Alu -16 293 17 315 204 114 0 chr15 22010669 22010757 -79369764 - MIR SINE MIR -48 214 117 410 154 13 0 chr15 22010804 22010882 -79369639 + (CA)n Simple_repeat Simple_repeat 2 80 0 180 114 171 0 chr15 22011440 22011475 -79369046 + L3 LINE CR1 1360 1400 -177 216 288 0 17 chr15 22011603 22011662 -79368859 + L2 LINE L2 2232 2289 -1025 2077 123 18 24 chr15 22012235 22012337 -79368184 - L1MA5A LINE L1 -6 6291 6190 5438 63 17 5 chr15 22012337 22012989 -79367532 - PABL_A LTR ERV1 0 660 1 2077 123 18 24 chr15 22012989 22013220 -79367301 - L1MA5A LINE L1 -107 6190 5960 652 194 0 0 chr15 22013229 22013337 -79367184 - AluSc SINE Alu -53 256 149 1205 123 4 111 chr15 22013337 22013502 -79367019 - L1MA5A LINE L1 -325 5972 5842 1729 191 0 10 chr15 22013502 22013801 -79366720 - AluJb SINE Alu -16 296 1 1205 123 4 111 chr15 22013801 22013887 -79366634 - L1MA5A LINE L1 -455 5842 5748 1314 241 70 47 chr15 22013954 22014381 -79366140 + L2 LINE L2 2310 2746 -568 227 230 40 14 chr15 22014388 22014462 -79366059 - MLT1I LTR MaLR -5 404 329 265 254 32 0 chr15 22014725 22014788 -79365733 + L2 LINE L2 2729 2793 -521 2037 184 62 14 chr15 22014882 22015317 -79365204 - L1MD2 LINE L1 -2 6357 5902 405 145 48 48 chr15 22016235 22016309 -79364212 + MLT1A1 LTR MaLR 1 74 -291 667 165 0 0 chr15 22016309 22016412 -79364109 + MER46A DNA MER2_type 2 104 -132 1226 169 0 60 chr15 22016412 22016678 -79363843 + L1MA4 LINE L1 5614 5863 -437 834 117 73 29 chr15 22016678 22016815 -79363706 + MER46A DNA MER2_type 94 236 0 * 1687 178 3 20 chr15 22016815 22017118 -79363403 + MLT1A1 LTR MaLR 68 365 0 308 283 0 38 chr15 22017118 22017224 -79363297 + MER5B DNA MER1_type 77 178 0 317 331 80 0 chr15 22018863 22019014 -79361507 - MIR SINE MIR -10 252 90 2275 76 13 10 chr15 22019162 22019466 -79361055 + AluSq SINE Alu 1 305 -8 5068 124 11 0 chr15 22019659 22020386 -79360135 - L1MA5A LINE L1 -11 6286 5552 199 221 257 18 chr15 22020521 22020634 -79359887 + MER5A DNA MER1_type 48 187 -2 * 459 204 10 10 chr15 22020542 22020645 -79359876 - MER5A DNA MER1_type -80 109 7 1124 163 5 0 chr15 22020763 22020947 -79359574 + MLT1C LTR MaLR 1 185 -282 2156 99 3 13 chr15 22020947 22021250 -79359271 + AluSg SINE Alu 1 300 -10 270 256 12 12 chr15 22022376 22022458 -79358063 + (TATATG)n Simple_repeat Simple_repeat 5 86 0 191 309 0 0 chr15 22022702 22022757 -79357764 - MIR3 SINE MIR -40 168 114 420 210 86 74 chr15 22023137 22023299 -79357222 - MER5B DNA MER1_type -14 164 1 211 239 80 0 chr15 22024502 22024615 -79355906 + (TCTA)n Simple_repeat Simple_repeat 2 123 0 24 0 0 0 chr15 22024904 22024928 -79355593 + AT_rich Low_complexity Low_complexity 1 24 0 2307 113 0 3 chr15 22025240 22025551 -79354970 + AluSx SINE Alu 1 310 -2 6794 26 1 0 chr15 22026107 22026847 -79353674 + L1PA5 LINE L1 5414 6154 0 1008 247 145 41 chr15 22027007 22027192 -79353329 - L1MC4a LINE L1 -1873 5935 5771 2150 111 7 0 chr15 22027192 22027480 -79353041 - AluSc SINE Alu -19 290 1 1008 247 145 41 chr15 22027480 22027906 -79352615 - L1MC4a LINE L1 -2037 5771 5260 384 327 151 16 chr15 22027926 22028244 -79352277 - L1MC4a LINE L1 -906 5240 4880 1574 224 63 104 chr15 22028273 22028859 -79351662 + MLT1E LTR MaLR 32 593 0 333 274 107 57 chr15 22028881 22029162 -79351359 - L1MC4a LINE L1 -1299 4847 4553 230 286 51 78 chr15 22029447 22029664 -79350857 - L1MC4a LINE L1 -2254 3892 3682 234 39 0 78 chr15 22029809 22029860 -79350661 + (TTTTC)n Simple_repeat Simple_repeat 3 49 0 2326 109 3 0 chr15 22029941 22030253 -79350268 + AluSq SINE Alu 1 313 0 21 82 0 0 chr15 22030516 22030565 -79349956 + AT_rich Low_complexity Low_complexity 1 49 0 282 94 47 0 chr15 22031274 22031338 -79349183 + (TA)n Simple_repeat Simple_repeat 2 68 0 2333 66 0 7 chr15 22031341 22031629 -79348892 - AluSc SINE Alu -23 286 1 21 36 0 0 chr15 22031734 22031762 -79348759 + AT_rich Low_complexity Low_complexity 1 28 0 1792 97 0 8 chr15 22032085 22032322 -79348199 - AluSg/x SINE Alu 0 312 78 303 325 46 31 chr15 22032645 22032839 -79347682 - HAL1b LINE L1 -1100 248 52 554 260 39 15 chr15 22033541 22033759 -79346762 + MLT1E-int LTR MaLR 125 465 -906 2133 96 0 0 chr15 22033925 22034197 -79346324 + AluSc SINE Alu 1 272 -37 180 0 0 0 chr15 22034202 22034222 -79346299 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 29 47 0 0 chr15 22034620 22034663 -79345858 + AT_rich Low_complexity Low_complexity 1 43 0 210 143 0 0 chr15 22034688 22034723 -79345798 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 184 333 171 0 chr15 22034877 22035000 -79345521 + MIR SINE MIR 50 193 -69 209 228 51 51 chr15 22035518 22035597 -79344924 + MER5B DNA MER1_type 95 173 -5 1770 228 73 5 chr15 22036311 22036679 -79343842 + MSTD LTR MaLR 4 396 0 2172 99 39 0 chr15 22037049 22037332 -79343189 - AluSx SINE Alu -18 294 1 25 75 0 0 chr15 22037722 22037775 -79342746 + AT_rich Low_complexity Low_complexity 1 53 0 321 351 12 23 chr15 22038457 22038628 -79341893 + MIR SINE MIR 37 205 -57 739 213 0 0 chr15 22039243 22039388 -79341133 + MER89-int LTR ERV1 7000 7124 -413 1127 142 139 59 chr15 22039388 22039817 -79340704 + LTR54B LTR ERV1 1 496 -2 289 0 49 0 chr15 22040103 22040144 -79340377 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2044 129 0 0 chr15 22040145 22040425 -79340096 - AluSx SINE Alu -32 280 1 477 220 47 27 chr15 22040461 22040611 -79339910 + LTR54B-int LTR ERV1 329 481 -7056 386 272 0 0 chr15 22040819 22040900 -79339621 + MER89-int LTR ERV1 2441 2521 -3810 1236 173 36 9 chr15 22040908 22041133 -79339388 - MER46A DNA MER2_type 0 236 6 257 271 0 0 chr15 22041138 22041197 -79339324 + MER89-int LTR ERV1 552 610 -6927 * 360 179 80 27 chr15 22041195 22041307 -79339214 + MER89-int LTR ERV1 712 829 -6708 525 184 117 17 chr15 22041309 22041488 -79339033 + LTR54B LTR ERV1 296 492 -6 445 250 40 32 chr15 22041994 22042118 -79338403 - MLT1I LTR MaLR -204 205 81 481 229 29 0 chr15 22043943 22044048 -79336473 - MLT1I LTR MaLR -8 401 294 2223 107 10 0 chr15 22044379 22044677 -79335844 - AluSx SINE Alu -11 301 1 2198 80 0 11 chr15 22045460 22045776 -79334745 + AluY SINE Alu 1 313 0 195 315 154 15 chr15 22046207 22046337 -79334184 - L2 LINE L2 -7 3306 3159 333 216 84 60 chr15 22046448 22046615 -79333906 + MLT1J1 LTR MaLR 42 212 -234 585 213 24 53 chr15 22046672 22046841 -79333680 + MLT1A2 LTR MaLR 4 167 -207 2405 107 0 0 chr15 22046841 22047151 -79333370 + AluSx SINE Alu 1 310 -2 2111 163 69 15 chr15 22047187 22047591 -79332930 + MSTB LTR MaLR 1 426 0 275 313 131 32 chr15 22047632 22048155 -79332366 + L2 LINE L2 2695 3271 -42 1475 236 35 75 chr15 22048473 22048994 -79331527 - MLT1D LTR MaLR -1 504 5 2155 107 3 7 chr15 22049089 22049380 -79331141 - AluSx SINE Alu -22 290 1 262 337 49 10 chr15 22050744 22050847 -79329674 + MER89-int LTR ERV1 6244 6455 -345 301 248 79 10 chr15 22050847 22050948 -79329573 + HERVL40 LTR ERVL 2758 2865 -172 540 256 8 0 chr15 22050959 22051076 -79329445 + HERVL40 LTR ERVL 5411 5528 -2 318 221 32 11 chr15 22051078 22051173 -79329348 + LTR40a LTR ERVL 1 97 -422 836 244 0 6 chr15 22051173 22051345 -79329176 - FRAM SINE Alu -5 171 1 1147 253 19 41 chr15 22051368 22051736 -79328785 + LTR40b LTR ERVL 102 461 -1 1265 151 0 15 chr15 22052508 22052707 -79327814 - AluSg/x SINE Alu -4 308 113 2563 241 73 11 chr15 22052756 22053371 -79327150 + MER82 DNA MER2_type 1 653 0 233 320 57 33 chr15 22054401 22054523 -79325998 - L2 LINE L2 -10 3262 3138 2019 140 0 32 chr15 22054551 22054865 -79325656 + AluSx SINE Alu 1 304 -8 28 48 0 0 chr15 22055871 22055913 -79324608 + AT_rich Low_complexity Low_complexity 1 42 0 4951 98 62 28 chr15 22056795 22057590 -79322931 - L1PA7 LINE L1 0 6154 5333 192 347 48 60 chr15 22057614 22057633 -79322888 + MIR SINE MIR 81 99 -163 2343 191 65 63 chr15 22057633 22058236 -79322285 - MER77 LTR ERV1 0 605 2 192 347 48 60 chr15 22058236 22058383 -79322138 + MIR SINE MIR 99 245 -17 1676 224 36 50 chr15 22058427 22058868 -79321653 + L1MDa LINE L1 185 619 -5921 270 231 0 0 chr15 22058879 22058931 -79321590 + LTR30 LTR ERV1 1 52 -670 2162 170 13 66 chr15 22058931 22059384 -79321137 + LTR12 LTR ERV1 53 481 -233 492 189 168 35 chr15 22059413 22059556 -79320965 + L1MDa LINE L1 661 822 -5718 762 285 95 3 chr15 22059649 22059954 -79320567 + L1MDa LINE L1 1570 1902 -4638 667 213 158 0 chr15 22060429 22060593 -79319928 - MER3 DNA MER1_type -18 191 2 471 297 22 11 chr15 22061625 22061807 -79318714 - MER5A DNA MER1_type -2 187 4 197 318 47 24 chr15 22061872 22061957 -79318564 + MIR SINE MIR 20 106 -156 202 214 14 14 chr15 22062177 22062247 -79318274 + CT-rich Low_complexity Low_complexity 4 73 0 1208 162 112 35 chr15 22063095 22063354 -79317167 - AluJo SINE Alu -33 279 1 858 136 52 7 chr15 22063540 22063694 -79316827 - L1MA10 LINE L1 0 6334 6174 546 215 0 0 chr15 22063695 22063825 -79316696 + (TG)n Simple_repeat Simple_repeat 2 131 0 770 121 121 0 chr15 22063826 22063958 -79316563 - L1MB1 LINE L1 -23 6166 6019 1571 164 37 3 chr15 22064409 22064708 -79315813 - L1MA9 LINE L1 -10 6302 5994 1805 188 6 11 chr15 22066837 22067188 -79313333 - L1MA7 LINE L1 -152 6139 5791 298 155 216 41 chr15 22067185 22067282 -79313239 + L1MA7 LINE L1 6171 6284 -7 * 360 233 23 108 chr15 22069147 22069323 -79311198 - MER103 DNA DNA -1 165 5 751 205 0 0 chr15 22069394 22069521 -79311000 + FLAM_A SINE Alu 2 128 -5 2192 142 70 28 chr15 22069750 22070180 -79310341 + LTR29 LTR ERV1 1 448 -174 2397 81 3 3 chr15 22070220 22070529 -79309992 + AluY SINE Alu 1 309 -2 1343 165 78 109 chr15 22070568 22071175 -79309346 + MER4C LTR ERV1 1 464 -1 1991 150 35 30 chr15 22072079 22072452 -79308069 + THE1C LTR MaLR 1 375 0 2157 209 25 66 chr15 22072793 22073357 -79307164 + MER87 LTR ERV1 1 541 0 1432 200 118 46 chr15 22073810 22074330 -79306191 + LTR48 LTR ERV1 1 739 -48 21 0 0 0 chr15 22075246 22075267 -79305254 + AT_rich Low_complexity Low_complexity 1 21 0 285 333 34 14 chr15 22075810 22075957 -79304564 - MIR SINE MIR 0 262 113 1683 190 7 0 chr15 22077263 22077542 -79302979 - AluJb SINE Alu -31 281 1 1144 158 0 0 chr15 22077891 22078068 -79302453 + FRAM SINE Alu 1 169 -7 189 0 0 0 chr15 22081271 22081292 -79299229 + (T)n Simple_repeat Simple_repeat 1 21 0 298 155 216 41 chr15 22083310 22083407 -79297114 - L1MA7 LINE L1 -7 6284 6171 * 1805 188 6 11 chr15 22083404 22083755 -79296766 + L1MA7 LINE L1 5791 6139 -152 1641 154 37 0 chr15 22085884 22086182 -79294339 + L1MA9 LINE L1 5994 6302 -10 432 289 20 13 chr15 22087106 22087255 -79293266 + MIR SINE MIR 48 197 -65 2154 64 34 30 chr15 22087765 22088061 -79292460 - AluY SINE Alu -14 297 1 240 344 79 20 chr15 22088631 22088884 -79291637 - L2 LINE L2 -198 3074 2807 1983 123 7 30 chr15 22088933 22089233 -79291288 - AluSg SINE Alu -17 293 1 189 147 0 0 chr15 22091327 22091361 -79289160 + (TTCTCC)n Simple_repeat Simple_repeat 3 36 0 220 137 39 0 chr15 22091401 22091452 -79289069 + CT-rich Low_complexity Low_complexity 2 54 0 351 290 36 22 chr15 22091494 22091632 -79288889 - L2 LINE L2 -7 3265 3126 407 305 31 0 chr15 22091771 22091899 -79288622 - MIR SINE MIR -43 219 88 46 0 0 0 chr15 22092230 22092276 -79288245 + GC_rich Low_complexity Low_complexity 1 46 0 4187 87 1 96 chr15 22092391 22093140 -79287381 + MER57-int LTR ERV1 4009 4686 -2851 3224 180 9 24 chr15 22093140 22093806 -79286715 + LTR8 LTR ERV1 1 656 -35 23 33 0 0 chr15 22093929 22093959 -79286562 + AT_rich Low_complexity Low_complexity 1 30 0 1128 134 6 0 chr15 22093998 22094169 -79286352 - AluSq SINE Alu -19 294 123 761 67 0 0 chr15 22094191 22094296 -79286225 - AluY SINE Alu 0 311 207 891 97 0 0 chr15 22094296 22094409 -79286112 - AluSp SINE Alu -200 113 1 192 330 21 32 chr15 22095413 22095507 -79285014 + MER5A DNA MER1_type 61 153 -36 305 257 77 74 chr15 22096032 22096885 -79283636 - L1MC4 LINE L1 0 8042 7239 1635 174 10 43 chr15 22096885 22097190 -79283331 - AluJo SINE Alu -17 295 1 305 257 77 74 chr15 22097190 22097422 -79283099 - L1MC4 LINE L1 -803 7239 7009 2214 152 26 26 chr15 22097442 22097863 -79282658 + L1MB3 LINE L1 5762 6182 -1 653 246 100 55 chr15 22097880 22098351 -79282170 - MLT1G1 LTR MaLR -28 562 46 953 268 116 11 chr15 22098449 22098804 -79281717 - L1MC4a LINE L1 -870 6938 6547 847 177 0 0 chr15 22098804 22098934 -79281587 + AluJb SINE Alu 1 130 -182 24 0 0 0 chr15 22098934 22098958 -79281563 + AT_rich Low_complexity Low_complexity 1 24 0 434 296 72 58 chr15 22098964 22099342 -79281179 - L1MC4a LINE L1 -1283 6525 6139 413 75 0 15 chr15 22099342 22099409 -79281112 + (CA)n Simple_repeat Simple_repeat 2 67 0 434 296 72 58 chr15 22099409 22099476 -79281045 - L1MC4a LINE L1 -1669 6139 6074 2462 172 19 2 chr15 22100235 22100654 -79279867 + MSTB LTR MaLR 1 426 0 1650 151 155 3 chr15 22101317 22101634 -79278887 + MLT1A1 LTR MaLR 1 365 0 2370 109 0 0 chr15 22101834 22102145 -79278376 - AluSq SINE Alu -2 311 1 199 243 57 0 chr15 22102197 22102267 -79278254 + L2 LINE L2 1949 2022 -1292 1994 119 7 52 chr15 22103333 22103643 -79276878 + AluSq SINE Alu 1 296 -17 268 340 79 20 chr15 22103692 22103945 -79276576 + L2 LINE L2 2807 3074 -198 2327 58 34 20 chr15 22104515 22104810 -79275711 + AluY SINE Alu 1 299 -12 432 289 20 13 chr15 22105320 22105469 -79275052 - MIR SINE MIR -65 197 48 1787 181 17 31 chr15 22106259 22106619 -79273902 + MLT1A1 LTR MaLR 11 365 0 207 176 39 20 chr15 22106628 22106679 -79273842 + GA-rich Low_complexity Low_complexity 4 55 0 288 284 74 29 chr15 22107602 22107743 -79272778 + MIR SINE MIR 13 154 -65 193 160 20 20 chr15 22107753 22107803 -79272718 + (TA)n Simple_repeat Simple_repeat 2 51 0 27077 146 11 19 chr15 22108433 22113439 -79267082 + L1PA10 LINE L1 554 5587 -874 2138 144 49 20 chr15 22113439 22113787 -79266734 - THE1B LTR MaLR -6 358 1 6196 106 9 5 chr15 22113787 22114677 -79265844 + L1PA10 LINE L1 5590 6483 0 1450 141 0 33 chr15 22115130 22115372 -79265149 - AluJb SINE Alu -19 293 60 401 321 42 17 chr15 22115399 22115636 -79264885 - LTR16A1 LTR ERVL -2 455 213 283 287 21 0 chr15 22115857 22115951 -79264570 + MER53 DNA DNA 94 189 0 300 253 107 15 chr15 22116906 22117033 -79263488 - L1MD3 LINE L1 0 7808 7685 304 231 0 0 chr15 22117035 22117087 -79263434 - L1MDa LINE L1 -5887 653 602 1354 229 42 55 chr15 22117168 22117570 -79262951 - L1MDa LINE L1 -6128 412 16 644 246 141 113 chr15 22118217 22118997 -79261524 + L1MC4 LINE L1 7155 7956 -86 1049 235 75 14 chr15 22119014 22119295 -79261226 + MER58B DNA MER1_type 1 298 -43 826 264 164 37 chr15 22119300 22119909 -79260612 + L1ME3A LINE L1 5480 6169 -1 1680 189 0 19 chr15 22119912 22120229 -79260292 + AluJo SINE Alu 1 311 -1 195 245 0 19 chr15 22120317 22120370 -79260151 - MIR SINE MIR -109 153 102 397 325 61 20 chr15 22121288 22121485 -79259036 - MIR SINE MIR -23 239 35 288 57 0 0 chr15 22121554 22121589 -79258932 + U2 snRNA snRNA 2 36 -152 542 86 12 0 chr15 22121704 22121785 -79258736 + (GAAA)n Simple_repeat Simple_repeat 4 85 0 298 147 29 15 chr15 22121780 22121848 -79258673 + G-rich Low_complexity Low_complexity 4 72 0 * 834 149 23 6 chr15 22121839 22122014 -79258507 + GA-rich Low_complexity Low_complexity 1 178 0 2423 164 20 41 chr15 22123523 22123961 -79256560 - MSTB1 LTR MaLR -3 429 1 1515 272 108 20 chr15 22124693 22125405 -79255116 - HERVL40 LTR ERVL -271 5259 4461 913 271 98 46 chr15 22125403 22125791 -79254730 - HERVL40 LTR ERVL -1367 4163 3756 * 896 224 29 0 chr15 22125810 22126015 -79254506 - MER20 DNA MER1_type 0 219 9 319 324 35 35 chr15 22126295 22126440 -79254081 + MIR SINE MIR 20 164 -98 200 260 27 27 chr15 22126871 22126944 -79253577 + GA-rich Low_complexity Low_complexity 6 78 0 21 0 0 0 chr15 22127346 22127367 -79253154 + AT_rich Low_complexity Low_complexity 1 21 0 28 71 0 0 chr15 22127639 22127695 -79252826 + AT_rich Low_complexity Low_complexity 1 56 0 2127 102 0 20 chr15 22127990 22128294 -79252227 + AluSx SINE Alu 1 298 -14 25 0 0 0 chr15 22128782 22128807 -79251714 + AT_rich Low_complexity Low_complexity 1 25 0 1952 112 0 11 chr15 22128807 22129084 -79251437 - AluSx SINE Alu -2 310 37 575 162 0 10 chr15 22129119 22129218 -79251303 + MER4A LTR ERV1 1 98 -566 1722 149 3 72 chr15 22129220 22129589 -79250932 + MER4A LTR ERV1 263 664 0 1365 275 113 45 chr15 22129618 22131194 -79249327 - L1ME3A LINE L1 -223 6016 4335 219 69 0 0 chr15 22131999 22132028 -79248493 + (TC)n Simple_repeat Simple_repeat 2 30 0 275 276 13 40 chr15 22132350 22132426 -79248095 + MIR3 SINE MIR 129 202 -6 485 81 27 0 chr15 22132462 22132536 -79247985 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 1596 105 5 5 chr15 22133264 22133483 -79247038 + AluSg/x SINE Alu 90 308 -4 1410 180 10 39 chr15 22134257 22134568 -79245953 - AluJb SINE Alu -10 302 1 1004 118 0 0 chr15 22134568 22134703 -79245818 - AluSq/x SINE Alu -178 135 1 1457 274 99 16 chr15 22135418 22135925 -79244596 - MLT1H1 LTR MaLR -6 549 1 228 229 33 0 chr15 22136007 22136068 -79244453 + MLT1J LTR MaLR 105 167 -344 189 0 0 0 chr15 22137039 22137060 -79243461 + (A)n Simple_repeat Simple_repeat 1 21 0 286 277 22 51 chr15 22137081 22137218 -79243303 - L1ME3A LINE L1 -4729 1667 1535 591 278 81 19 chr15 22137221 22137430 -79243091 - MER58A DNA MER1_type 0 224 3 226 353 23 15 chr15 22137575 22137708 -79242813 - L1ME3A LINE L1 -4882 1323 1190 1026 88 0 7 chr15 22137740 22137877 -79242644 - AluY SINE Alu -175 136 1 207 240 20 0 chr15 22137906 22137956 -79242565 + MIR SINE MIR 103 153 -109 227 321 55 0 chr15 22137965 22138074 -79242447 - LTR67 LTR ERVL -2 555 441 1919 141 0 0 chr15 22139700 22139977 -79240544 + AluSx SINE Alu 28 304 -8 2430 43 4 0 chr15 22140022 22140303 -79240218 + AluY SINE Alu 1 282 -29 25 0 0 0 chr15 22140310 22140335 -79240186 + AT_rich Low_complexity Low_complexity 1 25 0 1266 111 6 0 chr15 22140374 22140545 -79239976 - AluSq SINE Alu -19 294 123 853 38 0 0 chr15 22140567 22140672 -79239849 - AluY SINE Alu 0 311 207 878 97 0 0 chr15 22140672 22140785 -79239736 - AluSp SINE Alu -200 113 1 3989 188 28 35 chr15 22141383 22142234 -79238287 + L1MB3 LINE L1 5332 6176 -7 466 219 0 48 chr15 22142235 22142340 -79238181 + AluSq SINE Alu 120 219 -94 565 108 49 49 chr15 22142742 22142844 -79237677 + AluSg/x SINE Alu 206 307 -2 1909 152 0 29 chr15 22143278 22143593 -79236928 + AluJb SINE Alu 1 306 -6 2501 63 0 16 chr15 22143593 22143909 -79236612 + AluY SINE Alu 1 311 0 2040 228 23 21 chr15 22145583 22146113 -79234408 + MER74A LTR ERVL 15 545 -13 1630 122 13 4 chr15 22146116 22146395 -79234126 + AluSx SINE Alu 44 324 0 2137 136 0 0 chr15 22147255 22147556 -79232965 - AluSg SINE Alu -9 301 1 324 294 124 90 chr15 22147927 22148079 -79232442 - L1ME3A LINE L1 -5744 461 316 776 255 39 10 chr15 22148079 22148283 -79232238 - MER63A DNA MER1_type 0 210 1 324 294 124 90 chr15 22148283 22148484 -79232037 - L1ME3A LINE L1 -5889 316 96 25 51 0 0 chr15 22148812 22148851 -79231670 + AT_rich Low_complexity Low_complexity 1 39 0 32 43 0 0 chr15 22148879 22148925 -79231596 + AT_rich Low_complexity Low_complexity 1 46 0 1945 154 0 3 chr15 22149119 22149424 -79231097 + AluSx SINE Alu 1 304 -8 2893 136 9 59 chr15 22149852 22150370 -79230151 + LTR12 LTR ERV1 4 478 -236 569 253 89 72 chr15 22151375 22151878 -79228643 + L1M4 LINE L1 2769 3280 -2866 352 217 0 0 chr15 22151904 22151973 -79228548 + AluJ/FLAM SINE Alu 1 69 -233 1449 150 63 8 chr15 22151973 22152227 -79228294 + AluJb SINE Alu 30 297 -15 1188 248 80 30 chr15 22154383 22154823 -79225698 + MLT1C LTR MaLR 6 467 0 490 301 17 23 chr15 22155049 22155222 -79225299 - L1MC/D LINE L1 -2063 5745 5574 1182 133 9 67 chr15 22155620 22155845 -79224676 - L1MB3 LINE L1 -10 6173 5962 22 0 0 0 chr15 22155906 22155928 -79224593 + AT_rich Low_complexity Low_complexity 1 22 0 1207 129 40 0 chr15 22156059 22156261 -79224260 - L1MA8 LINE L1 -7 6284 6075 891 327 87 43 chr15 22156297 22157048 -79223473 - L1MC/D LINE L1 -1339 4807 4002 306 0 0 0 chr15 22157048 22157082 -79223439 + (CA)n Simple_repeat Simple_repeat 2 35 0 891 327 87 43 chr15 22157082 22157293 -79223228 - L1MC/D LINE L1 -2144 4002 3802 799 199 20 165 chr15 22157475 22157826 -79222695 + MER51C LTR ERV1 341 640 0 21 0 0 0 chr15 22158145 22158166 -79222355 + AT_rich Low_complexity Low_complexity 1 21 0 1819 108 100 4 chr15 22158431 22158710 -79221811 - AluSc SINE Alu -3 306 1 416 310 91 44 chr15 22158894 22159300 -79221221 - HAL1b LINE L1 -691 657 233 376 306 46 27 chr15 22159821 22160040 -79220481 - HAL1 LINE L1 -1159 1348 1126 2040 135 10 0 chr15 22160158 22160454 -79220067 - AluSx SINE Alu -13 299 1 243 248 79 30 chr15 22160853 22160954 -79219567 - MIR SINE MIR -50 212 107 342 282 106 37 chr15 22161279 22161524 -79218997 + L1ME LINE L1 5493 5754 -367 6622 176 42 4 chr15 22161798 22163047 -79217474 + L1MC3 LINE L1 5326 6621 -1164 212 147 0 0 chr15 22163047 22163081 -79217440 + (GAAAA)n Simple_repeat Simple_repeat 5 38 0 1265 244 19 4 chr15 22163652 22163923 -79216598 + L1MC3 LINE L1 6594 6868 -917 3027 174 100 60 chr15 22163930 22164303 -79216218 + L1MC3 LINE L1 7019 7376 -409 1846 138 0 31 chr15 22164303 22164594 -79215927 + AluJo SINE Alu 5 286 -26 3027 174 100 60 chr15 22164594 22164950 -79215571 + L1MC3 LINE L1 7376 7777 -8 1972 115 79 55 chr15 22166805 22167171 -79213350 + THE1C LTR MaLR 1 375 0 1925 251 31 36 chr15 22167237 22167815 -79212706 - MER90 LTR ERV1 0 575 1 2594 141 33 0 chr15 22167923 22168313 -79212208 + MER57A LTR ERV1 1 403 0 8291 129 17 10 chr15 22168313 22169568 -79210953 + MER57A-int LTR ERV1 1 1264 -6273 * 8502 156 58 31 chr15 22169553 22171372 -79209149 + MER41-int LTR ERV1 506 3265 -2681 2273 103 3 10 chr15 22171375 22171687 -79208834 + AluSx SINE Alu 1 310 -2 25 0 0 0 chr15 22171687 22171712 -79208809 + AT_rich Low_complexity Low_complexity 1 25 0 2127 102 0 20 chr15 22172199 22172503 -79208018 - AluSx SINE Alu -14 298 1 28 71 0 0 chr15 22172798 22172854 -79207667 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr15 22173126 22173147 -79207374 + AT_rich Low_complexity Low_complexity 1 21 0 183 330 48 10 chr15 22173455 22173558 -79206963 + L2 LINE L2 1846 1952 -1362 319 324 35 35 chr15 22174053 22174198 -79206323 - MIR SINE MIR -98 164 20 896 224 29 0 chr15 22174478 22174683 -79205838 + MER20 DNA MER1_type 9 219 0 821 263 62 53 chr15 22174702 22175040 -79205481 + HERVL40 LTR ERVL 3756 4096 -1434 1526 269 113 22 chr15 22175127 22175799 -79204722 + HERVL40 LTR ERVL 4502 5259 -271 2423 164 20 41 chr15 22176531 22176969 -79203552 + MSTB1 LTR MaLR 1 429 -3 762 156 24 6 chr15 22178475 22178642 -79201879 + CT-rich Low_complexity Low_complexity 1 170 0 298 147 29 15 chr15 22178633 22178701 -79201820 + C-rich Low_complexity Low_complexity 4 72 0 * 509 99 12 0 chr15 22178696 22178777 -79201744 + (TTTC)n Simple_repeat Simple_repeat 4 85 0 307 250 147 49 chr15 22179242 22179426 -79201095 + LTR33A LTR ERVL 310 511 -12 262 226 151 38 chr15 22179494 22179600 -79200921 - L2 LINE L2 -179 3093 2976 960 301 75 31 chr15 22179622 22180325 -79200196 - ERVL LTR ERVL -2662 2334 1713 816 204 0 13 chr15 22180343 22180495 -79200026 + FRAM SINE Alu 3 152 -24 422 288 79 70 chr15 22180610 22181055 -79199466 - ERVL LTR ERVL -4193 1571 1123 528 288 141 0 chr15 22181322 22181485 -79199036 + MER5A DNA MER1_type 4 189 0 585 295 27 13 chr15 22181522 22181769 -79198752 - ERVL LTR ERVL -4969 698 435 24 0 0 0 chr15 22181986 22182010 -79198511 + AT_rich Low_complexity Low_complexity 1 24 0 2166 112 0 0 chr15 22182010 22182295 -79198226 + AluSx SINE Alu 1 285 -27 207 0 0 0 chr15 22182295 22182318 -79198203 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 2155 122 0 10 chr15 22182505 22182809 -79197712 - AluSx SINE Alu -11 301 1 198 0 0 0 chr15 22183405 22183427 -79197094 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 454 246 64 60 chr15 22183445 22183808 -79196713 - MLT1H LTR MaLR -98 457 32 218 344 22 0 chr15 22183873 22183963 -79196558 + L2 LINE L2 3181 3272 0 2246 91 0 7 chr15 22184527 22184854 -79195667 - AluY SINE Alu 0 311 1 285 252 84 17 chr15 22186271 22186390 -79194131 + L1ME4a LINE L1 5991 6117 -4 1080 160 13 179 chr15 22186628 22187009 -79193512 + L1MC4 LINE L1 6458 6775 -1267 554 237 66 33 chr15 22187026 22187178 -79193343 + MER77 LTR ERV1 41 197 -408 500 226 133 61 chr15 22187230 22187411 -79193110 + MER77 LTR ERV1 177 370 -235 263 283 119 87 chr15 22188196 22188415 -79192106 - L2 LINE L2 0 3272 3047 221 0 35 0 chr15 22188763 22188792 -79191729 + (TA)n Simple_repeat Simple_repeat 2 31 0 425 350 102 39 chr15 22190260 22190797 -79189724 - L2 LINE L2 -1 3271 2703 4078 252 54 16 chr15 22191098 22191971 -79188550 + L1M4 LINE L1 2960 3905 -2241 985 63 87 0 chr15 22191971 22192098 -79188423 + MER85 DNA T2_type 1 138 -1 4078 252 54 16 chr15 22192098 22192583 -79187938 + L1M4 LINE L1 3905 4370 -1776 732 221 21 32 chr15 22193084 22193274 -79187247 + L1 LINE L1 4120 4307 -1839 6127 86 20 1 chr15 22193287 22194159 -79186362 + L1M3e LINE L1 2117 2986 -4579 1853 187 3 0 chr15 22194965 22195270 -79185251 - AluJb SINE Alu -6 306 1 1133 158 0 0 chr15 22195617 22195794 -79184727 + FRAM SINE Alu 1 169 -7 198 0 0 0 chr15 22198996 22199018 -79181503 + (T)n Simple_repeat Simple_repeat 1 22 0 8384 138 26 35 chr15 22199421 22199569 -79180952 - Tigger1 DNA MER2_type 0 2418 2270 2261 129 49 22 chr15 22199569 22199934 -79180587 - THE1C LTR MaLR 0 375 1 8384 138 26 35 chr15 22199934 22200154 -79180367 - Tigger1 DNA MER2_type -148 2270 2049 2043 89 4 4 chr15 22200154 22200425 -79180096 + AluSc SINE Alu 1 271 -38 222 37 0 0 chr15 22200429 22200456 -79180065 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8384 138 26 35 chr15 22200456 22201499 -79179022 - Tigger1 DNA MER2_type -372 2046 1014 655 226 0 23 chr15 22201502 22201635 -79178886 + FLAM_C SINE Alu 3 132 -1 1595 131 31 8 chr15 22201648 22201907 -79178614 - Tigger1 DNA MER2_type -1918 500 236 7851 127 146 31 chr15 22201910 22203430 -79177091 - pTR5 LTR ERV1 0 2438 744 1358 129 4 98 chr15 22203430 22203694 -79176827 - Tigger1 DNA MER2_type -2178 240 2 21 0 0 0 chr15 22204385 22204406 -79176115 + AT_rich Low_complexity Low_complexity 1 21 0 222 37 0 0 chr15 22205639 22205666 -79174855 + (TC)n Simple_repeat Simple_repeat 2 28 0 203 200 22 0 chr15 22205865 22205910 -79174611 + L2 LINE L2 3227 3272 0 2229 119 0 3 chr15 22206230 22206541 -79173980 + AluSx SINE Alu 3 312 0 375 199 28 21 chr15 22206735 22206876 -79173645 + CT-rich Low_complexity Low_complexity 3 144 0 2057 227 84 23 chr15 22207014 22207612 -79172909 - MER92B LTR ERV1 -1 635 2 476 297 31 0 chr15 22208088 22208216 -79172305 + MIR SINE MIR 88 219 -43 343 290 36 22 chr15 22208355 22208493 -79172028 + L2 LINE L2 3126 3265 -7 199 157 39 0 chr15 22208535 22208586 -79171935 + GA-rich Low_complexity Low_complexity 2 54 0 189 147 0 0 chr15 22208626 22208660 -79171861 + (GGAGAA)n Simple_repeat Simple_repeat 3 36 0 2103 119 0 55 chr15 22210754 22211082 -79169439 + AluSg SINE Alu 1 310 0 210 37 0 0 chr15 22212252 22212279 -79168242 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 1961 127 48 3 chr15 22212504 22212795 -79167726 - AluSx SINE Alu -8 304 1 2388 75 20 3 chr15 22213816 22214122 -79166399 - AluY SINE Alu 0 311 1 1493 160 30 15 chr15 22214122 22214385 -79166136 - AluJo SINE Alu -17 295 29 3814 137 79 12 chr15 22214583 22215225 -79165296 + LTR12 LTR ERV1 1 685 -3 1575 148 33 30 chr15 22215554 22215825 -79164696 + AluJb SINE Alu 16 287 -25 2376 156 47 5 chr15 22215984 22216407 -79164114 + L1PA14 LINE L1 5721 6161 0 34 0 0 0 chr15 22216421 22216455 -79164066 + AT_rich Low_complexity Low_complexity 1 34 0 1105 158 98 24 chr15 22216488 22216785 -79163736 + MER33 DNA MER1_type 6 324 0 629 275 48 37 chr15 22217018 22217274 -79163247 - MLT2F LTR ERVL -9 654 396 929 236 11 0 chr15 22217274 22217456 -79163065 - MER63A DNA MER1_type 0 210 27 1534 261 20 23 chr15 22217482 22217881 -79162640 - MLT2F LTR ERVL -265 398 1 348 296 83 0 chr15 22217896 22218028 -79162493 - MIR SINE MIR -109 153 11 7455 132 14 6 chr15 22218043 22220278 -79160243 + L1MA2 LINE L1 4048 6303 -1 33 0 0 0 chr15 22220279 22220312 -79160209 + AT_rich Low_complexity Low_complexity 1 33 0 1842 140 60 3 chr15 22220531 22220816 -79159705 + AluSx SINE Alu 1 301 -11 1467 182 64 10 chr15 22221690 22221986 -79158535 + AluJo SINE Alu 1 312 0 1106 239 95 21 chr15 22222839 22223103 -79157418 - L1M4 LINE L1 -920 5226 4918 186 43 0 0 chr15 22223103 22223126 -79157395 + (CA)n Simple_repeat Simple_repeat 2 24 0 1106 239 95 21 chr15 22223126 22223284 -79157237 - L1M4 LINE L1 -1228 4918 4773 260 357 18 52 chr15 22223292 22223620 -79156901 - L1MCc LINE L1 -6088 335 19 2407 149 45 12 chr15 22223850 22224306 -79156215 + Tigger2 DNA MER2_type 1 2717 -1 1798 173 36 15 chr15 22224599 22224935 -79155586 - MER2 DNA MER2_type -1 343 1 1689 127 0 4 chr15 22225359 22225596 -79154925 + AluSq SINE Alu 1 236 -77 23 0 0 0 chr15 22225607 22225630 -79154891 + AT_rich Low_complexity Low_complexity 1 23 0 1843 156 0 21 chr15 22225822 22226110 -79154411 + AluJo SINE Alu 1 282 -30 1434 205 79 3 chr15 22226229 22226532 -79153989 + MLT1E2 LTR MaLR 135 460 -166 516 167 21 10 chr15 22226532 22226628 -79153893 + MER4A LTR ERV1 2 98 -566 * 1718 168 11 19 chr15 22226624 22226976 -79153545 + MER4A LTR ERV1 257 664 0 641 239 38 0 chr15 22226977 22227136 -79153385 + MLT1E2 LTR MaLR 459 623 -1 780 254 152 72 chr15 22228032 22228482 -79152039 + MER34C LTR ERV1 4 505 -80 2040 128 3 13 chr15 22228482 22228780 -79151741 - AluSx SINE Alu -15 297 3 780 254 152 72 chr15 22228780 22228868 -79151653 + MER34C LTR ERV1 505 585 0 1168 88 6 50 chr15 22228893 22229074 -79151447 + MER4A LTR ERV1 1 173 -491 1691 94 5 0 chr15 22229083 22229306 -79151215 + MER4E LTR ERV1 3 226 -553 1168 88 6 50 chr15 22229337 22229518 -79151003 + MER4A LTR ERV1 1 173 -491 5087 122 14 38 chr15 22229527 22229988 -79150533 + MER4E LTR ERV1 3 473 -306 1094 23 8 0 chr15 22229988 22230121 -79150400 + (TTTC)n Simple_repeat Simple_repeat 3 136 0 1927 101 26 4 chr15 22230130 22230398 -79150123 - AluSx SINE Alu -38 274 1 5087 122 14 38 chr15 22230398 22230722 -79149799 + MER4E LTR ERV1 481 779 0 2005 138 72 52 chr15 22230726 22231131 -79149390 + MER4A LTR ERV1 252 664 0 2369 92 3 19 chr15 22232052 22232369 -79148152 + AluSq SINE Alu 2 313 0 572 230 7 7 chr15 22232386 22232521 -79148000 + FAM SINE Alu 1 135 -50 338 256 54 14 chr15 22232623 22232807 -79147714 - MER34 LTR ERV1 -3 746 447 242 196 37 93 chr15 22232835 22232871 -79147650 - LTR48 LTR ERV1 -301 486 450 3207 188 21 65 chr15 22232871 22233594 -79146927 + LTR8 LTR ERV1 1 691 0 242 196 37 93 chr15 22233594 22233664 -79146857 - LTR48 LTR ERV1 -337 450 386 1247 103 11 0 chr15 22233664 22233838 -79146683 + MER41B LTR ERV1 1 176 -459 2180 94 0 10 chr15 22233839 22234167 -79146354 + AluY SINE Alu 1 311 0 192 344 22 0 chr15 22234729 22234819 -79145702 - L2 LINE L2 0 3272 3181 451 238 72 68 chr15 22234884 22235247 -79145274 + MLT1H LTR MaLR 32 457 -98 198 0 0 0 chr15 22235265 22235287 -79145234 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2174 122 0 10 chr15 22235883 22236187 -79144334 + AluSx SINE Alu 1 301 -11 207 0 0 0 chr15 22236374 22236397 -79144124 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 2186 112 0 0 chr15 22236397 22236682 -79143839 - AluSx SINE Alu -27 285 1 24 0 0 0 chr15 22236682 22236706 -79143815 + AT_rich Low_complexity Low_complexity 1 24 0 580 295 27 13 chr15 22236923 22237170 -79143351 + ERVL LTR ERVL 435 698 -4969 478 294 141 0 chr15 22237207 22237370 -79143151 - MER5A DNA MER1_type 0 189 4 437 287 79 68 chr15 22237638 22238081 -79142440 + ERVL LTR ERVL 1124 1571 -4193 821 204 0 13 chr15 22238196 22238348 -79142173 - FRAM SINE Alu -24 152 3 952 306 81 34 chr15 22238366 22239069 -79141452 + ERVL LTR ERVL 1713 2452 -2662 255 214 129 0 chr15 22239091 22239161 -79141360 + L2 LINE L2 2976 3054 -218 301 261 147 49 chr15 22239265 22239449 -79141072 - LTR33A LTR ERVL -12 511 310 645 0 0 0 chr15 22241488 22241560 -79138961 - tRNA-Glu-GAA tRNA tRNA -3 72 1 2294 94 24 3 chr15 22242177 22242507 -79138014 + L1PA12 LINE L1 5824 6160 -8 569 260 123 10 chr15 22243970 22244174 -79136347 + MLT1J2 LTR MaLR 195 421 -29 920 94 8 0 chr15 22244937 22245065 -79135456 + AluSc SINE Alu 179 307 -2 239 204 37 0 chr15 22245449 22245503 -79135018 - MIR SINE MIR -90 118 63 951 120 15 29 chr15 22245612 22245778 -79134743 - MER41-int LTR ERV1 -3095 2851 1214 318 175 0 0 chr15 22245895 22245952 -79134569 - FAM SINE Alu -3 176 120 327 215 13 0 chr15 22246206 22246285 -79134236 + MER116 DNA Mariner 1 80 0 697 209 44 6 chr15 22246472 22246630 -79133891 - MER69 DNA AcHobo -2343 183 20 2545 127 26 0 chr15 22247225 22247612 -79132909 - MER57A LTR ERV1 -6 397 1 1384 88 156 0 chr15 22247619 22247824 -79132697 - MER57A-int LTR ERV1 -22 7515 7279 815 76 23 38 chr15 22247824 22247955 -79132566 - LTR54B LTR ERV1 -367 131 3 17174 98 30 5 chr15 22247955 22250359 -79130162 - MER57A-int LTR ERV1 -391 7146 4683 4354 116 3 18 chr15 22250359 22250986 -79129535 - LTR8 LTR ERV1 0 691 74 1613 203 65 46 chr15 22300986 22301241 -79079280 - L1 LINE L1 -1296 4850 4580 1894 140 3 56 chr15 22301241 22301562 -79078959 + AluSx SINE Alu 9 312 0 1613 203 65 46 chr15 22301562 22301785 -79078736 - L1 LINE L1 -1566 4580 4363 2125 113 44 19 chr15 22301787 22302151 -79078370 + THE1C LTR MaLR 3 375 0 2491 168 15 50 chr15 22302153 22302222 -79078299 - L1 LINE L1 -1780 4366 4296 1902 189 0 0 chr15 22302222 22302518 -79078003 - AluJb SINE Alu -16 296 1 2491 168 15 50 chr15 22302518 22302587 -79077934 - L1 LINE L1 -1850 4296 4226 276 30 0 0 chr15 22302587 22302620 -79077901 + (TG)n Simple_repeat Simple_repeat 2 34 0 2491 168 15 50 chr15 22302620 22303077 -79077444 - L1 LINE L1 -1920 4226 3791 255 114 0 0 chr15 22303256 22303300 -79077221 + (GA)n Simple_repeat Simple_repeat 1 44 0 252 0 0 0 chr15 22303328 22303356 -79077165 + (GA)n Simple_repeat Simple_repeat 1 28 0 206 32 32 0 chr15 22303464 22303495 -79077026 + (GA)n Simple_repeat Simple_repeat 1 32 0 446 261 125 23 chr15 22303635 22303811 -79076710 - MIR SINE MIR -48 214 21 1538 215 233 30 chr15 22304630 22304694 -79075827 + L1ME1 LINE L1 4471 4521 -1625 2173 112 27 0 chr15 22304694 22304988 -79075533 - AluSp SINE Alu -11 302 1 1538 215 233 30 chr15 22304988 22305336 -79075185 + L1ME1 LINE L1 4521 4797 -1349 2727 75 11 0 chr15 22305336 22305696 -79074825 + THE1B LTR MaLR 1 364 0 1538 215 233 30 chr15 22305696 22305976 -79074545 + L1ME1 LINE L1 4797 5305 -841 718 75 11 0 chr15 22305978 22306072 -79074449 - AluY SINE Alu -12 299 205 2275 257 97 10 chr15 22306073 22306856 -79073665 + L1ME1 LINE L1 5301 6151 -15 409 245 39 0 chr15 22307143 22307245 -79073276 + MER5A DNA MER1_type 4 109 -80 1581 212 87 60 chr15 22309618 22310066 -79070455 + LTR40b LTR ERVL 3 462 0 273 281 21 0 chr15 22310246 22310342 -79070179 - MER5A DNA MER1_type -83 106 9 2095 101 30 0 chr15 22310422 22310718 -79069803 + AluSp SINE Alu 1 305 -8 1815 180 10 57 chr15 22311264 22311669 -79068852 + MLT1B LTR MaLR 1 386 -4 472 300 110 21 chr15 22311684 22311921 -79068600 - L3b LINE CR1 -123 1460 1203 207 0 0 0 chr15 22312411 22312434 -79068087 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 215 295 103 0 chr15 22312635 22312713 -79067808 + MER5B DNA MER1_type 9 94 -84 652 149 9 9 chr15 22313203 22313310 -79067211 + MLT1B LTR MaLR 222 328 -62 1712 190 116 52 chr15 22313333 22313585 -79066936 - MER82 DNA MER2_type -221 432 198 2000 122 0 0 chr15 22313585 22313871 -79066650 + AluSx SINE Alu 1 286 -26 372 22 0 0 chr15 22313871 22313916 -79066605 + (CA)n Simple_repeat Simple_repeat 2 46 0 1712 190 116 52 chr15 22313916 22314068 -79066453 - MER82 DNA MER2_type -454 199 1 215 359 13 0 chr15 22314305 22314383 -79066138 + MIR3 SINE MIR 129 207 -1 2899 147 36 32 chr15 22314990 22315380 -79065141 + LTR26B LTR ERV1 1 395 -136 1278 164 285 14 chr15 22315380 22315734 -79064787 - LTR7 LTR ERV1 0 450 1 2899 147 36 32 chr15 22315734 22315872 -79064649 + LTR26B LTR ERV1 395 531 0 255 237 0 34 chr15 22316362 22316421 -79064100 + MIR SINE MIR 170 226 -36 769 161 8 8 chr15 22316513 22316637 -79063884 + FLAM_C SINE Alu 2 125 -18 222 136 0 0 chr15 22317745 22317789 -79062732 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 4562 167 47 8 chr15 22318479 22319323 -79061198 + MER4D LTR ERV1 1 877 -26 302 237 65 79 chr15 22319880 22320019 -79060502 + L1MC4a LINE L1 5868 6004 -1804 2163 163 70 34 chr15 22320088 22320531 -79059990 + LTR2B LTR ERV1 32 490 0 258 308 71 69 chr15 22320962 22321135 -79059386 - MIR SINE MIR -64 198 21 21 0 0 0 chr15 22322424 22322445 -79058076 + AT_rich Low_complexity Low_complexity 1 21 0 527 247 62 75 chr15 22322450 22322888 -79057633 - L1MC5 LINE L1 -53 7908 7477 383 322 70 26 chr15 22323925 22324155 -79056366 - L3 LINE CR1 -869 708 469 1241 211 31 20 chr15 22324157 22324540 -79055981 - L1M3b LINE L1 -4603 1678 1284 1938 119 0 7 chr15 22324547 22324842 -79055679 + AluSg1 SINE Alu 14 306 -3 387 0 0 0 chr15 22324848 22324891 -79055630 + (CA)n Simple_repeat Simple_repeat 2 44 0 926 249 133 72 chr15 22324971 22325336 -79055185 + LTR1B LTR ERV1 56 464 -362 2123 106 3 3 chr15 22325336 22325638 -79054883 - AluSx SINE Alu -10 302 1 926 249 133 72 chr15 22325638 22325799 -79054722 + LTR1B LTR ERV1 464 614 -212 277 242 172 20 chr15 22325879 22325978 -79054543 + LTR28 LTR ERV1 900 1013 -7 1598 170 7 0 chr15 22325985 22326261 -79054260 + AluJb SINE Alu 31 308 -4 198 103 0 0 chr15 22327318 22327347 -79053174 + (CAGG)n Simple_repeat Simple_repeat 3 31 0 283 108 60 5 chr15 22327390 22327448 -79053073 - MLT2B1 LTR ERVL 0 554 462 358 147 35 35 chr15 22327450 22327566 -79052955 + (TAGA)n Simple_repeat Simple_repeat 3 118 0 1369 253 108 7 chr15 22327610 22328065 -79052456 - MLT2B1 LTR ERVL -19 501 1 526 208 23 62 chr15 22328423 22328553 -79051968 - FLAM_C SINE Alu -16 127 3 3395 169 120 2 chr15 22328798 22329430 -79051091 - LTR12 LTR ERV1 -7 707 1 1465 158 12 15 chr15 22330717 22330976 -79049545 + MER2 DNA MER2_type 86 343 -2 21 0 0 0 chr15 22331839 22331860 -79048661 + AT_rich Low_complexity Low_complexity 1 21 0 1221 166 104 68 chr15 22332526 22332804 -79047717 + AluJo SINE Alu 1 288 -24 1679 162 0 17 chr15 22332815 22333141 -79047380 + AluJb SINE Alu 1 321 0 351 0 0 0 chr15 22333174 22333213 -79047308 + (CA)n Simple_repeat Simple_repeat 2 40 0 350 344 56 28 chr15 22333355 22333535 -79046986 - MIR3 SINE MIR -12 196 12 425 309 67 26 chr15 22333676 22333870 -79046651 + MIR3 SINE MIR 6 207 -1 513 316 124 9 chr15 22334186 22334509 -79046012 + L1MEc LINE L1 70 429 -5967 1962 89 33 0 chr15 22334572 22334692 -79045829 + AluSc SINE Alu 1 116 -203 392 0 21 0 chr15 22334692 22334740 -79045781 + (CA)n Simple_repeat Simple_repeat 2 50 0 1962 89 33 0 chr15 22334740 22334929 -79045592 + AluSc SINE Alu 116 319 0 815 259 45 0 chr15 22335066 22335267 -79045254 + MER20 DNA MER1_type 1 210 -9 961 158 7 0 chr15 22335330 22335482 -79045039 + FRAM SINE Alu 1 153 -23 376 172 62 14 chr15 22335482 22335627 -79044894 + (TA)n Simple_repeat Simple_repeat 1 152 0 1994 68 0 0 chr15 22335685 22335936 -79044585 + AluY SINE Alu 45 295 -16 521 186 20 0 chr15 22337280 22337382 -79043139 - MER53 DNA DNA -85 104 1 180 311 40 14 chr15 22337830 22337904 -79042617 - MIR SINE MIR -70 192 117 1728 146 3 20 chr15 22338349 22338644 -79041877 + AluJb SINE Alu 1 290 -22 3119 185 42 5 chr15 22338970 22339614 -79040907 - L1MB7 LINE L1 0 6184 5517 1998 148 0 10 chr15 22339644 22339955 -79040566 + AluSq SINE Alu 1 308 -5 2198 142 60 53 chr15 22340075 22340120 -79040401 - MSTA LTR MaLR 0 428 385 2126 103 0 13 chr15 22340120 22340421 -79040100 + AluSc SINE Alu 1 297 -12 2198 142 60 53 chr15 22340421 22340791 -79039730 - MSTA LTR MaLR -43 385 10 479 281 96 0 chr15 22340851 22341029 -79039492 + MLT1I LTR MaLR 3 197 -212 1170 127 6 0 chr15 22341029 22341202 -79039319 - AluSg/x SINE Alu -15 295 122 522 309 59 0 chr15 22341202 22341406 -79039115 + MLT1I LTR MaLR 194 409 0 417 309 112 27 chr15 22341786 22342009 -79038512 - L2 LINE L2 -155 3117 2876 375 347 60 69 chr15 22342159 22342608 -79037913 - L2 LINE L2 -592 2722 2278 3598 164 20 41 chr15 22343257 22343962 -79036559 + LTR8 LTR ERV1 2 691 0 317 155 35 0 chr15 22344133 22344191 -79036330 - HERV16 LTR ERVL -3086 1910 1851 222 118 0 0 chr15 22344293 22344327 -79036194 + (TAGG)n Simple_repeat Simple_repeat 2 35 0 181 185 56 0 chr15 22344528 22344582 -79035939 + (TATG)n Simple_repeat Simple_repeat 4 60 0 363 115 49 41 chr15 22344923 22345173 -79035348 + (TG)n Simple_repeat Simple_repeat 1 252 0 399 140 47 23 chr15 22345204 22345375 -79035146 + (TG)n Simple_repeat Simple_repeat 1 175 0 270 178 70 4 chr15 22345401 22345653 -79034868 + (TG)n Simple_repeat Simple_repeat 1 268 0 753 206 22 11 chr15 22345963 22346147 -79034374 - MER53 DNA DNA 0 189 4 21 0 0 0 chr15 22346392 22346413 -79034108 + AT_rich Low_complexity Low_complexity 1 21 0 330 216 134 8 chr15 22346958 22347092 -79033429 + L1ME4a LINE L1 5968 6118 -3 544 344 35 53 chr15 22347570 22347945 -79032576 + L1M3d LINE L1 241 608 -5523 1499 234 25 50 chr15 22348108 22348325 -79032196 + L1M3d LINE L1 918 1139 -5002 1894 98 69 0 chr15 22348325 22348599 -79031922 + AluY SINE Alu 1 293 -18 1499 234 25 50 chr15 22348599 22348785 -79031736 + L1M3d LINE L1 1139 1310 -4831 1884 93 23 0 chr15 22348785 22349043 -79031478 + AluSc SINE Alu 32 295 -14 1499 234 25 50 chr15 22349043 22349122 -79031399 + L1M3d LINE L1 1310 1389 -4752 * 4918 142 22 2 chr15 22349097 22350248 -79030273 + L1MA3 LINE L1 4871 6045 -324 824 163 7 20 chr15 22350248 22350401 -79030120 + AluJo SINE Alu 1 151 -161 3073 174 14 0 chr15 22350437 22351154 -79029367 + L1MB2 LINE L1 5051 5780 -391 1371 174 11 43 chr15 22351154 22351436 -79029085 + AluJo SINE Alu 1 273 -39 225 0 0 0 chr15 22351441 22351466 -79029055 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1825 170 17 47 chr15 22351466 22351872 -79028649 + L1MB2 LINE L1 5778 6171 0 1501 231 85 38 chr15 22352401 22352847 -79027674 - MLT1D LTR MaLR 0 505 39 1201 108 0 0 chr15 22352854 22353021 -79027500 - L1PA16 LINE L1 -229 5937 5771 1771 176 143 38 chr15 22353021 22353442 -79027079 - MLT2B1 LTR ERVL -55 465 1 1064 191 3 95 chr15 22353443 22353536 -79026985 + AluJb SINE Alu 24 124 -188 1482 139 51 70 chr15 22353536 22353852 -79026669 - AluSp SINE Alu -3 310 1 1064 191 3 95 chr15 22353852 22354073 -79026448 + AluJb SINE Alu 124 309 -3 230 200 109 0 chr15 22354326 22354381 -79026140 - MIR SINE MIR -93 169 109 23 0 0 0 chr15 22355662 22355685 -79024836 + AT_rich Low_complexity Low_complexity 1 23 0 537 264 29 23 chr15 22356522 22356696 -79023825 - MER45A DNA AcHobo 0 178 4 713 34 0 0 chr15 22357212 22357300 -79023221 + AluY SINE Alu 216 303 -8 767 49 0 10 chr15 22357314 22357416 -79023105 + AluY SINE Alu 200 300 -11 432 244 76 67 chr15 22357775 22358013 -79022508 + pTR5 LTR ERV1 761 1000 -1438 3206 166 46 58 chr15 22358223 22358918 -79021603 + LTR12 LTR ERV1 1 687 -1 489 226 36 68 chr15 22360014 22360235 -79020286 - LTR37B LTR ERV1 -13 455 242 810 183 131 102 chr15 22360451 22360795 -79019726 + MLT1E2 LTR MaLR 63 416 -210 418 237 67 87 chr15 22360972 22361114 -79019407 + MER112 DNA MER1_type 3 139 -121 1792 183 20 30 chr15 22361114 22361508 -79019013 + MLT1B LTR MaLR 1 390 0 418 237 67 87 chr15 22361508 22361618 -79018903 + MER112 DNA MER1_type 139 250 -10 1335 168 76 42 chr15 22362071 22362333 -79018188 + AluJb SINE Alu 1 271 -41 312 232 40 20 chr15 22362950 22363049 -79017472 - MER5A DNA MER1_type -80 109 9 27 0 0 0 chr15 22363712 22363739 -79016782 + AT_rich Low_complexity Low_complexity 1 27 0 2606 58 0 0 chr15 22363752 22364063 -79016458 - AluY SINE Alu 0 311 1 1507 223 103 5 chr15 22364163 22364562 -79015959 + L1MB2 LINE L1 5692 6129 -42 401 186 52 52 chr15 22364562 22364659 -79015862 + AluJb SINE Alu 32 128 -174 917 197 17 6 chr15 22364768 22364946 -79015575 + AluJb SINE Alu 111 290 -22 306 105 0 0 chr15 22364948 22365005 -79015516 + L1MB3 LINE L1 6127 6183 0 1462 175 18 103 chr15 22365330 22365729 -79014792 - MLT1A1 LTR MaLR 0 365 1 611 67 11 0 chr15 22365938 22366027 -79014494 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 1901 144 0 7 chr15 22366782 22367189 -79013332 - AluSx SINE Alu 0 405 1 1347 65 0 38 chr15 22367569 22367753 -79012768 - AluY SINE Alu -6 305 129 2046 124 47 0 chr15 22367966 22368264 -79012257 + AluSx SINE Alu 1 312 0 216 208 21 0 chr15 22368709 22368757 -79011764 + CT-rich Low_complexity Low_complexity 1 49 0 318 189 27 14 chr15 22370477 22370551 -79009970 - MIR SINE MIR -3 259 185 759 159 164 80 chr15 22370570 22370771 -79009750 - MER20 DNA MER1_type -1 218 1 2721 263 25 22 chr15 22370951 22372207 -79008314 + L1M3c LINE L1 2 1625 -4516 3535 245 36 28 chr15 22372216 22373413 -79007108 + L1MA4 LINE L1 2420 3629 -3936 2251 113 3 0 chr15 22373413 22373715 -79006806 + AluSg SINE Alu 1 303 -7 3535 245 36 28 chr15 22373715 22373759 -79006762 + L1MA4 LINE L1 3629 3671 -3894 372 145 53 0 chr15 22373754 22373830 -79006691 + L1MA4 LINE L1 4379 4458 -3107 * 527 173 39 13 chr15 22374326 22374482 -79006039 + L1MA4 LINE L1 4447 4606 -2959 847 221 94 53 chr15 22374507 22374900 -79005621 - LTR56 LTR ERV1 -10 435 27 3611 185 51 31 chr15 22374960 22376256 -79004265 - LTR56-int LTR ERV1 -101 6005 4505 1679 163 7 24 chr15 22376256 22376581 -79003940 - AluJb SINE Alu 0 312 1 3611 185 51 31 chr15 22376581 22376678 -79003843 - LTR56-int LTR ERV1 -1601 4505 4411 529 170 88 0 chr15 22376688 22376796 -79003725 - LTR49-int LTR ERV1 -5058 1205 1 808 201 91 0 chr15 22376964 22377118 -79003403 - MER21B LTR ERV1 -367 496 329 8638 150 20 31 chr15 22377130 22378146 -79002375 + L1MA4 LINE L1 4620 5646 -2073 9168 167 26 30 chr15 22378146 22378382 -79002139 + L1PA13 LINE L1 3703 3938 -2225 2304 93 0 3 chr15 22378382 22378673 -79001848 + AluY SINE Alu 3 292 -19 9168 167 26 30 chr15 22378673 22380785 -78999736 + L1PA13 LINE L1 3938 6051 -112 3330 114 8 29 chr15 22380785 22381303 -78999218 + MER9 LTR ERVK 1 507 -4 9168 167 26 30 chr15 22381303 22381416 -78999105 + L1PA13 LINE L1 6051 6163 0 8638 150 20 31 chr15 22381416 22381880 -78998641 + L1MA4 LINE L1 5646 6114 -1605 1675 171 7 10 chr15 22381880 22382172 -78998349 - AluJb SINE Alu -21 291 1 8638 150 20 31 chr15 22382172 22382697 -78997824 + L1MA4 LINE L1 6114 6643 -1076 1846 175 3 20 chr15 22382697 22383000 -78997521 + AluJb SINE Alu 5 302 -10 8638 150 20 31 chr15 22383000 22383889 -78996632 + L1MA4 LINE L1 6643 7540 -179 1716 157 3 55 chr15 22383889 22384201 -78996320 + AluJo SINE Alu 3 298 -14 8638 150 20 31 chr15 22384201 22384308 -78996213 + L1MA4 LINE L1 7540 7522 -197 2234 100 0 3 chr15 22384308 22384599 -78995922 - AluSc SINE Alu -19 290 1 8638 150 20 31 chr15 22384599 22384796 -78995725 + L1MA4 LINE L1 7521 7719 0 922 211 14 21 chr15 22384775 22385059 -78995462 + L1 LINE L1 4308 4589 -2976 * 2161 111 3 3 chr15 22386138 22386427 -78994094 + AluSq SINE Alu 5 293 -20 2092 76 0 0 chr15 22387297 22387546 -78992975 + AluY SINE Alu 1 249 -62 2786 192 92 37 chr15 22387756 22388455 -78992066 - Tigger6a DNA MER2_type -2 1081 345 258 349 0 0 chr15 22388455 22388561 -78991960 - L1MEd LINE L1 -1257 4872 4767 223 280 70 30 chr15 22388594 22388694 -78991827 + MIR SINE MIR 36 139 -69 2065 100 10 17 chr15 22388777 22389164 -78991357 + AluSp SINE Alu 3 387 0 1676 172 7 10 chr15 22390273 22390563 -78989958 + AluJo SINE Alu 5 293 -19 2200 95 3 10 chr15 22390621 22390925 -78989596 + AluSq SINE Alu 1 302 -11 677 320 104 19 chr15 22391116 22391654 -78988867 - L1ME3A LINE L1 -213 5957 5374 2357 108 0 0 chr15 22391686 22391992 -78988529 - AluSx SINE Alu -6 306 1 314 44 0 22 chr15 22392241 22392286 -78988235 + (TG)n Simple_repeat Simple_repeat 2 45 0 1552 199 7 3 chr15 22392670 22392957 -78987564 + AluJo SINE Alu 12 299 -13 618 271 88 35 chr15 22392959 22393299 -78987222 - L1MEd LINE L1 -1508 4621 4264 281 298 92 33 chr15 22393306 22393578 -78986943 - L1MEd LINE L1 -1938 4191 3904 396 341 79 40 chr15 22393639 22393818 -78986703 - L1MEd LINE L1 -2439 3690 3520 2236 100 38 0 chr15 22393818 22394107 -78986414 - AluSx SINE Alu -8 304 5 396 341 79 40 chr15 22394107 22394332 -78986189 - L1MEd LINE L1 -2609 3520 3270 1273 201 10 55 chr15 22394592 22394901 -78985620 - AluJb SINE Alu -9 303 9 1362 266 68 30 chr15 22394955 22394972 -78985549 - L1MEd LINE L1 -2953 3176 3161 1924 175 0 9 chr15 22394972 22395287 -78985234 - AluSx SINE Alu 0 312 1 1362 266 68 30 chr15 22395287 22396076 -78984445 - L1MEd LINE L1 -2968 3161 2334 1964 121 50 0 chr15 22396076 22396356 -78984165 - AluSx SINE Alu -8 304 11 1362 266 68 30 chr15 22396356 22396388 -78984133 - L1MEd LINE L1 -3795 2334 2305 290 214 0 57 chr15 22396407 22396477 -78984044 + MIR SINE MIR 111 176 -86 354 330 70 0 chr15 22396491 22396606 -78983915 - L2 LINE L2 -1 3312 3190 282 247 54 43 chr15 22396608 22396701 -78983820 + MIR SINE MIR 169 262 0 1736 169 6 47 chr15 22396862 22397182 -78983339 - AluSx SINE Alu -5 307 1 1041 237 114 17 chr15 22397349 22397825 -78982696 - MLT1G LTR MaLR -3 587 10 288 262 0 0 chr15 22397819 22397880 -78982641 - MLT1G1 LTR MaLR -534 61 1 * 23 33 0 0 chr15 22398055 22398085 -78982436 + AT_rich Low_complexity Low_complexity 1 30 0 737 274 139 51 chr15 22398263 22398756 -78981765 - L1MEd LINE L1 -4862 1257 694 2138 128 3 0 chr15 22398756 22399053 -78981468 - AluSg SINE Alu -12 298 1 737 274 139 51 chr15 22399053 22399343 -78981178 - L1MEd LINE L1 -5425 694 431 1203 244 98 9 chr15 22399795 22400110 -78980411 - MER2 DNA MER2_type 0 345 3 1847 136 14 4 chr15 22402015 22402294 -78978227 - AluSx SINE Alu -30 282 1 3496 152 113 21 chr15 22402776 22403406 -78977115 - LTR12 LTR ERV1 0 688 1 195 269 0 0 chr15 22403511 22403563 -78976958 - L2 LINE L2 -26 3246 3195 1842 188 60 130 chr15 22403792 22404032 -78976489 + MER70B LTR ERVL 5 260 -318 3125 86 19 9 chr15 22404032 22404462 -78976059 - MER57B LTR ERV1 0 434 1 1842 188 60 130 chr15 22404462 22404838 -78975683 + MER70B LTR ERVL 260 578 0 1777 226 20 18 chr15 22405327 22405721 -78974800 - MSTD LTR MaLR -1 395 1 206 333 44 0 chr15 22406293 22406428 -78974093 - L2 LINE L2 -222 3050 2910 2026 125 0 0 chr15 22406494 22406774 -78973747 + AluSx SINE Alu 1 280 -32 217 0 61 0 chr15 22406775 22406808 -78973713 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1134 197 4 37 chr15 22407359 22407603 -78972918 - LTR51 LTR ERV1 0 671 436 292 159 0 57 chr15 22407618 22407706 -78972815 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 2217 111 69 62 chr15 22407706 22407889 -78972632 - LTR51 LTR ERV1 -232 439 259 2491 76 3 0 chr15 22407889 22408193 -78972328 + AluY SINE Alu 1 305 -6 2217 111 69 62 chr15 22408193 22408365 -78972156 - LTR51 LTR ERV1 -412 259 78 2086 83 22 70 chr15 22408365 22408678 -78971843 - AluY SINE Alu -13 298 1 2217 111 69 62 chr15 22408678 22408727 -78971794 - LTR51 LTR ERV1 -593 78 31 1656 221 113 82 chr15 22408724 22409231 -78971290 - LTR8 LTR ERV1 -232 461 1 * 2344 183 38 20 chr15 22409253 22409702 -78970819 - LTR32 LTR ERVL 0 471 15 2391 104 10 0 chr15 22410100 22410408 -78970113 - AluSx SINE Alu -1 311 1 421 229 52 100 chr15 22410804 22411020 -78969501 + MER34C LTR ERV1 47 253 -332 4006 96 5 25 chr15 22411020 22411408 -78969113 - MER41A LTR ERV1 0 554 178 2136 95 0 11 chr15 22411408 22411722 -78968799 - AluY SINE Alu 0 311 1 4006 96 5 25 chr15 22411722 22411897 -78968624 - MER41A LTR ERV1 -376 178 1 242 196 37 93 chr15 22411897 22411967 -78968554 + LTR48 LTR ERV1 386 450 -337 421 229 52 100 chr15 22411897 22411911 -78968610 + MER34C LTR ERV1 253 266 -319 3207 188 21 65 chr15 22411967 22412690 -78967831 - LTR8 LTR ERV1 0 691 1 242 196 37 93 chr15 22412690 22412726 -78967795 + LTR48 LTR ERV1 450 486 -301 338 256 54 14 chr15 22412754 22412938 -78967583 + MER34 LTR ERV1 447 539 -3 572 230 7 7 chr15 22413040 22413175 -78967346 - FAM SINE Alu -50 135 1 2399 91 0 19 chr15 22413192 22413510 -78967011 - AluSq SINE Alu 0 313 2 2269 195 5 88 chr15 22414447 22414459 -78966062 + L1MA10 LINE L1 5782 5793 -541 291 54 0 0 chr15 22414459 22414496 -78966025 + (TG)n Simple_repeat Simple_repeat 1 37 0 2269 195 5 88 chr15 22414496 22414851 -78965670 + L1MA10 LINE L1 5793 6082 -252 1743 181 3 3 chr15 22414851 22415150 -78965371 + AluJb SINE Alu 1 299 -13 2269 195 5 88 chr15 22415150 22415381 -78965140 + L1MA10 LINE L1 6082 6331 -3 271 307 187 24 chr15 22415612 22415778 -78964743 + L3 LINE CR1 1034 1226 -351 308 282 24 0 chr15 22416028 22416113 -78964408 + L3 LINE CR1 1054 1140 -437 1499 103 0 0 chr15 22416264 22416459 -78964062 + AluSc SINE Alu 1 195 -114 317 89 0 0 chr15 22416459 22416504 -78964017 + AluSc SINE Alu 254 298 -1 21 0 0 0 chr15 22416537 22416558 -78963963 + AT_rich Low_complexity Low_complexity 1 21 0 324 275 25 8 chr15 22416622 22416742 -78963779 - Tigger8 DNA MER2_type -117 549 428 492 247 95 6 chr15 22416822 22416980 -78963541 - Tigger8 DNA MER2_type -368 298 127 465 272 83 38 chr15 22417138 22417451 -78963070 - L1ME4a LINE L1 -263 5858 5532 1302 101 37 5 chr15 22417485 22417673 -78962848 - AluSg/x SINE Alu -7 305 112 822 104 0 52 chr15 22418175 22418310 -78962211 - FLAM_C SINE Alu -11 132 5 443 245 29 0 chr15 22418320 22418459 -78962062 - MER5A DNA MER1_type 0 189 47 1474 286 169 10 chr15 22418954 22419839 -78960682 + Charlie2a DNA MER1_type 529 1554 -1308 701 211 116 12 chr15 22419839 22420260 -78960261 + Charlie2a DNA MER1_type 2110 2675 -187 186 103 0 0 chr15 22420321 22420350 -78960171 + (CA)n Simple_repeat Simple_repeat 2 30 0 394 237 191 0 chr15 22420358 22420489 -78960032 + Charlie2a DNA MER1_type 1912 2067 -795 281 240 41 16 chr15 22420496 22420617 -78959904 + (TA)n Simple_repeat Simple_repeat 1 124 0 194 128 26 0 chr15 22420633 22420672 -78959849 + (TA)n Simple_repeat Simple_repeat 1 40 0 550 258 26 0 chr15 22420675 22420830 -78959691 + Charlie2a DNA MER1_type 2703 2861 -1 2470 216 93 48 chr15 22421110 22421340 -78959181 - Charlie2 DNA MER1_type -7 2855 2637 1661 192 0 7 chr15 22421340 22421637 -78958884 + AluJo SINE Alu 1 295 -17 2470 216 93 48 chr15 22421637 22422223 -78958298 - Charlie2 DNA MER1_type -225 2637 1987 1860 158 18 0 chr15 22422223 22422507 -78958014 - AluJo SINE Alu -23 289 1 2470 216 93 48 chr15 22422507 22422645 -78957876 - Charlie2 DNA MER1_type -875 1987 1857 21 36 0 0 chr15 22423016 22423044 -78957477 + AT_rich Low_complexity Low_complexity 1 28 0 763 173 0 23 chr15 22423423 22423556 -78956965 + FLAM_A SINE Alu 1 130 -3 1883 200 68 8 chr15 22424227 22424738 -78955783 + MER67A LTR ERV1 2 543 0 994 243 47 7 chr15 22425740 22426035 -78954486 - MLT1E1 LTR MaLR 0 654 312 613 212 23 0 chr15 22426067 22426199 -78954322 + FLAM_C SINE Alu 9 143 0 1170 190 190 0 chr15 22426200 22426495 -78954026 - MLT1E1 LTR MaLR -303 351 1 287 49 24 0 chr15 22427580 22427621 -78952900 + (TG)n Simple_repeat Simple_repeat 2 43 0 3888 141 59 1 chr15 22427626 22428288 -78952233 - Tigger3b DNA MER2_type 0 1231 532 1395 176 0 0 chr15 22428288 22428498 -78952023 + AluJb SINE Alu 1 210 -102 1588 143 0 4 chr15 22428603 22428840 -78951681 + AluJb SINE Alu 65 300 -12 800 136 8 0 chr15 22428842 22428960 -78951561 - Tigger3b DNA MER2_type -693 539 421 361 123 18 0 chr15 22428965 22429022 -78951499 + AluJ/FRAM SINE Alu 229 286 -16 22 0 0 0 chr15 22429023 22429045 -78951476 + AT_rich Low_complexity Low_complexity 1 22 0 1989 154 59 31 chr15 22429045 22429434 -78951087 - Tigger3b DNA MER2_type -830 401 2 392 141 0 35 chr15 22429445 22429530 -78950991 + (TA)n Simple_repeat Simple_repeat 1 82 0 194 302 32 0 chr15 22430338 22430401 -78950120 - MER5A DNA MER1_type -52 137 73 276 316 137 5 chr15 22430476 22430666 -78949855 + MIR SINE MIR 46 260 -2 658 208 8 8 chr15 22430914 22431044 -78949477 - AluJo SINE Alu -178 134 5 276 130 0 0 chr15 22431361 22431407 -78949114 + (T)n Simple_repeat Simple_repeat 1 46 0 270 218 0 18 chr15 22431407 22431462 -78949059 - MER31A LTR ERV1 -84 401 348 1949 230 6 10 chr15 22432833 22433318 -78947203 + L1MC4a LINE L1 3763 4317 -1829 665 172 0 0 chr15 22436275 22436391 -78944130 + FLAM_C SINE Alu 1 116 -17 22 0 0 0 chr15 22436391 22436413 -78944108 + AT_rich Low_complexity Low_complexity 1 22 0 933 255 150 39 chr15 22436611 22437098 -78943423 + L1MC4a LINE L1 5287 5827 -1981 3521 177 18 9 chr15 22437731 22438398 -78942123 + L1MC1 LINE L1 5660 6332 -1 2419 72 0 0 chr15 22438782 22439074 -78941447 + AluY SINE Alu 1 292 -19 1333 188 16 38 chr15 22439303 22439622 -78940899 + AluJo SINE Alu 1 312 0 299 328 58 43 chr15 22439885 22440211 -78940310 + L1MC/D LINE L1 5435 5765 -2043 1646 176 7 17 chr15 22440661 22440951 -78939570 + AluJo SINE Alu 1 287 -25 317 110 49 24 chr15 22440951 22441033 -78939488 + GA-rich Low_complexity Low_complexity 1 84 0 1587 219 28 14 chr15 22442114 22442205 -78938316 + MER47A DNA MER2_type 3 91 -2232 1357 161 142 11 chr15 22442205 22442472 -78938049 + AluJb SINE Alu 1 302 0 1587 219 28 14 chr15 22442472 22442783 -78937738 + MER47A DNA MER2_type 91 366 0 282 56 0 0 chr15 22442783 22442819 -78937702 + (TTA)n Simple_repeat Simple_repeat 3 38 0 507 283 26 71 chr15 22442874 22443100 -78937421 - L2 LINE L2 0 3313 3098 1681 162 10 24 chr15 22443145 22443435 -78937086 + AluJo SINE Alu 26 311 -1 324 263 107 39 chr15 22444236 22444417 -78936104 - L1ME3A LINE L1 0 6170 5976 2225 217 53 31 chr15 22444429 22444941 -78935580 - L1ME2 LINE L1 -75 6325 5795 3082 145 10 2 chr15 22444941 22445423 -78935098 - MER66B LTR ERV1 0 486 1 2225 217 53 31 chr15 22445423 22445545 -78934976 - L1ME2 LINE L1 -605 5795 5677 374 261 57 78 chr15 22445543 22445588 -78934933 - L1ME2 LINE L1 -2613 3769 3725 * 1706 183 0 37 chr15 22445588 22445911 -78934610 - AluJb SINE Alu -1 311 1 374 261 57 78 chr15 22445911 22446095 -78934426 - L1ME2 LINE L1 -2657 3725 3545 862 293 103 28 chr15 22446128 22446977 -78933544 - L1ME2 LINE L1 -4451 2112 1005 2368 109 0 0 chr15 22447169 22447472 -78933049 - AluSx SINE Alu -9 303 1 541 314 29 77 chr15 22447688 22448012 -78932509 - L1ME2 LINE L1 -5963 600 299 1589 183 24 10 chr15 22448012 22448302 -78932219 + AluJo SINE Alu 1 294 -18 541 314 29 77 chr15 22448302 22448394 -78932127 - L1ME2 LINE L1 -6264 299 204 1049 115 26 19 chr15 22448896 22449052 -78931469 + AluSg/x SINE Alu 154 310 0 198 0 0 0 chr15 22449090 22449112 -78931409 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 4029 77 0 0 chr15 22449113 22449635 -78930886 - L1PA8 LINE L1 0 6172 5651 1796 132 13 56 chr15 22449786 22450089 -78930432 - AluJo SINE Alu -18 294 5 2516 69 0 0 chr15 22450557 22450860 -78929661 - AluY SINE Alu -8 303 1 2180 196 50 14 chr15 22452305 22452492 -78928029 + MLT1C LTR MaLR 4 183 -284 222 37 0 0 chr15 22452492 22452519 -78928002 + (CA)n Simple_repeat Simple_repeat 2 28 0 2180 196 50 14 chr15 22452519 22452771 -78927750 + MLT1C LTR MaLR 183 459 -8 623 196 0 0 chr15 22452851 22452963 -78927558 + AluJb SINE Alu 200 311 -1 61 37 0 0 chr15 22453127 22453209 -78927312 + AT_rich Low_complexity Low_complexity 1 82 0 2075 211 79 68 chr15 22453209 22453464 -78927057 - L1MD2 LINE L1 -148 6211 5960 2032 158 0 0 chr15 22453464 22453775 -78926746 + AluJb SINE Alu 1 311 -1 2075 211 79 68 chr15 22453775 22454141 -78926380 - L1MD2 LINE L1 -399 5960 5583 245 276 32 0 chr15 22454210 22454295 -78926226 - L1M4 LINE L1 -256 5922 5831 635 154 0 0 chr15 22454320 22454424 -78926097 + AluJb SINE Alu 201 304 -8 843 152 25 93 chr15 22454424 22454519 -78926002 + ERVL-B3 LTR ERVL 5378 5478 -176 746 167 0 23 chr15 22454519 22454651 -78925870 + AluJ SINE Alu 2 130 -172 843 152 25 93 chr15 22454651 22454718 -78925803 + ERVL-B3 LTR ERVL 5478 5548 -106 735 189 0 0 chr15 22454718 22454840 -78925681 + FLAM_C SINE Alu 1 122 -11 843 152 25 93 chr15 22454840 22454973 -78925548 + ERVL-B3 LTR ERVL 5548 5654 0 2552 157 7 176 chr15 22454973 22455080 -78925441 + MLT2B3 LTR ERVL 1 124 -430 1854 167 3 0 chr15 22455080 22455362 -78925159 - AluJo SINE Alu -25 287 5 2552 157 7 176 chr15 22455362 22455828 -78924693 + MLT2B3 LTR ERVL 124 516 -38 812 88 19 32 chr15 22455829 22456050 -78924471 + (TCTA)n Simple_repeat Simple_repeat 1 217 0 903 100 17 17 chr15 22456098 22456278 -78924243 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 302 98 66 33 chr15 22456292 22456353 -78924168 + MLT2B1 LTR ERVL 458 520 0 1021 167 13 0 chr15 22456886 22457042 -78923479 + AluJ SINE Alu 133 290 -22 26 30 0 0 chr15 22457364 22457397 -78923124 + AT_rich Low_complexity Low_complexity 1 33 0 282 281 20 92 chr15 22457597 22457750 -78922771 - L2 LINE L2 -3 3310 3169 307 370 53 53 chr15 22458094 22458359 -78922162 - HAL1 LINE L1 -1405 1102 838 464 305 54 18 chr15 22458394 22458561 -78921960 - MER5B DNA MER1_type 0 178 6 2482 63 0 3 chr15 22458755 22459057 -78921464 - AluSg SINE Alu -3 307 7 25 0 0 0 chr15 22459337 22459362 -78921159 + AT_rich Low_complexity Low_complexity 1 25 0 2231 103 14 0 chr15 22459382 22459674 -78920847 - AluSp SINE Alu -17 296 1 498 135 0 58 chr15 22459862 22459960 -78920561 + FLAM_C SINE Alu 45 137 -1 2014 141 17 3 chr15 22459960 22460251 -78920270 - AluSx SINE Alu -17 295 1 32 0 0 0 chr15 22460256 22460288 -78920233 + AT_rich Low_complexity Low_complexity 1 32 0 210 345 84 8 chr15 22460717 22460836 -78919685 + L2 LINE L2 2467 2594 -720 686 273 167 9 chr15 22461192 22461628 -78918893 + L2 LINE L2 2452 2956 -358 303 320 144 7 chr15 22461910 22462063 -78918458 + L2 LINE L2 2895 3068 -245 285 311 48 10 chr15 22462103 22462206 -78918315 + L2 LINE L2 3201 3307 -6 22 0 0 0 chr15 22464355 22464377 -78916144 + GC_rich Low_complexity Low_complexity 1 22 0 242 169 42 28 chr15 22464422 22464493 -78916028 + (GGCTG)n Simple_repeat Simple_repeat 5 76 0 1903 177 10 3 chr15 22465800 22466110 -78914411 + AluJb SINE Alu 1 312 0 1617 193 18 12 chr15 22466901 22467228 -78913293 - L1MB3 LINE L1 -193 5990 5662 336 24 0 0 chr15 22467697 22467738 -78912783 + (CA)n Simple_repeat Simple_repeat 2 42 0 372 133 0 0 chr15 22470010 22470070 -78910451 + (TG)n Simple_repeat Simple_repeat 2 61 0 425 233 63 126 chr15 22470371 22470574 -78909947 + LTR41 LTR ERVL 461 644 -129 1383 197 21 45 chr15 22470574 22470863 -78909658 - AluJo SINE Alu -30 282 1 425 233 63 126 chr15 22470863 22470930 -78909591 + LTR41 LTR ERVL 644 714 -59 317 219 59 3 chr15 22470945 22471051 -78909470 + LTR50 LTR ERVL 665 794 -1 2370 131 54 28 chr15 22472962 22473153 -78907368 + Tigger2 DNA MER2_type 2280 2465 -253 2566 63 0 0 chr15 22473153 22473452 -78907069 - AluY SINE Alu -12 299 1 2370 131 54 28 chr15 22473452 22473688 -78906833 + Tigger2 DNA MER2_type 2465 2718 0 391 103 17 0 chr15 22474361 22474419 -78906102 + Alu SINE Alu 1 59 -241 350 231 90 30 chr15 22475162 22475296 -78905225 - MIR SINE MIR -74 188 47 309 252 206 13 chr15 22475335 22475490 -78905031 - MER5A DNA MER1_type -2 187 3 240 250 250 0 chr15 22475797 22475873 -78904648 - MIR SINE MIR -50 212 118 193 262 0 0 chr15 22476894 22476936 -78903585 + MER5A DNA MER1_type 40 81 -108 1496 173 0 12 chr15 22477763 22478011 -78902510 - AluJo SINE Alu -67 245 1 1533 219 54 74 chr15 22478011 22478388 -78902133 - L1MC5 LINE L1 -308 7653 7291 240 35 0 0 chr15 22478388 22478417 -78902104 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1533 219 54 74 chr15 22478417 22478664 -78901857 - L1MC5 LINE L1 -670 7291 7041 1925 107 73 25 chr15 22478693 22479049 -78901472 - THE1C LTR MaLR -2 373 1 698 203 57 28 chr15 22479062 22479274 -78901247 - L1MD3 LINE L1 0 7995 7778 3066 231 22 66 chr15 22479295 22479594 -78900927 - L1M4 LINE L1 -1825 4321 4010 312 27 0 0 chr15 22479594 22479631 -78900890 + (TG)n Simple_repeat Simple_repeat 2 38 0 3066 231 22 66 chr15 22479631 22480085 -78900436 - L1M4 LINE L1 -2136 4010 3626 2383 96 3 6 chr15 22480085 22480397 -78900124 - AluSq SINE Alu -2 311 1 3066 231 22 66 chr15 22480397 22480704 -78899817 - L1M4 LINE L1 -2520 3626 3307 570 243 110 57 chr15 22480954 22481255 -78899266 + L1MD2 LINE L1 1 317 -6223 2829 235 52 17 chr15 22481442 22483302 -78897219 + L1MD2 LINE L1 4391 6553 -2 1470 254 62 16 chr15 22483298 22483746 -78896775 + L1MD2 LINE L1 5881 6349 -10 * 1299 199 88 6 chr15 22485912 22486243 -78894278 - L1MA9 LINE L1 -258 6054 5697 769 169 26 56 chr15 22486258 22486453 -78894068 + L1MA9 LINE L1 6042 6230 -82 442 252 37 7 chr15 22486574 22486709 -78893812 - L1MD3 LINE L1 -1066 6929 6791 318 147 73 147 chr15 22486740 22486849 -78893672 - L1MC5 LINE L1 -1000 6961 6861 550 152 0 0 chr15 22486849 22486941 -78893580 - AluJ/FRAM SINE Alu -3 309 218 198 0 0 0 chr15 22486961 22486983 -78893538 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1215 246 66 33 chr15 22487810 22488395 -78892126 - LTR48B LTR ERV1 0 644 1 570 163 10 0 chr15 22488909 22489007 -78891514 - FLAM_C SINE Alu -16 127 29 21 0 0 0 chr15 22489433 22489454 -78891067 + AT_rich Low_complexity Low_complexity 1 21 0 1984 224 52 20 chr15 22491412 22491953 -78888568 + MER74A LTR ERVL 1 558 0 2069 86 0 36 chr15 22492104 22492384 -78888137 + AluY SINE Alu 38 307 -4 998 233 97 3 chr15 22493497 22493785 -78886736 - MLT1B LTR MaLR 0 390 76 2474 82 3 0 chr15 22494055 22494359 -78886162 - AluSg SINE Alu -5 305 1 1849 148 13 20 chr15 22495810 22496113 -78884408 - AluJo SINE Alu -10 302 2 23 0 0 0 chr15 22496528 22496551 -78883970 + AT_rich Low_complexity Low_complexity 1 23 0 1313 270 53 18 chr15 22496551 22497056 -78883465 - L1MB4 LINE L1 -26 6154 5632 783 201 154 21 chr15 22497061 22497295 -78883226 - L1MB5 LINE L1 -36 6138 5874 2400 117 0 0 chr15 22497320 22497627 -78882894 - AluSg SINE Alu -3 307 1 266 267 19 29 chr15 22497653 22497758 -78882763 - L1MC5 LINE L1 -44 7917 7814 351 0 0 0 chr15 22499117 22499156 -78881365 + (TG)n Simple_repeat Simple_repeat 2 40 0 803 94 0 9 chr15 22499827 22499933 -78880588 + AluSq/x SINE Alu 3 107 -206 277 306 74 33 chr15 22500068 22500189 -78880332 - L2 LINE L2 -1 3312 3187 2334 92 3 7 chr15 22501568 22501871 -78878650 - AluSp SINE Alu -8 305 4 381 129 0 0 chr15 22502314 22502384 -78878137 + (TG)n Simple_repeat Simple_repeat 1 70 0 2243 174 47 5 chr15 22503997 22504115 -78876406 - LTR34 LTR ERV1 0 699 588 2335 91 3 10 chr15 22504115 22504413 -78876108 + AluSx SINE Alu 1 296 -16 2243 174 47 5 chr15 22504413 22504737 -78875784 - LTR34 LTR ERV1 -111 588 238 742 179 0 21 chr15 22504739 22504879 -78875642 - FLAM_C SINE Alu -6 137 1 405 157 0 0 chr15 22504885 22504955 -78875566 - LTR34 LTR ERV1 -463 236 167 2459 189 20 2 chr15 22504955 22505404 -78875117 - LTR32 LTR ERVL 0 471 15 577 228 82 0 chr15 22505404 22505562 -78874959 - LTR34 LTR ERV1 -528 171 1 262 323 82 25 chr15 22505656 22505814 -78874707 - MIR SINE MIR -69 193 27 1781 185 97 0 chr15 22506042 22506393 -78874128 - MLT1B LTR MaLR -5 385 1 2439 78 3 10 chr15 22506653 22506962 -78873559 - AluSg SINE Alu -3 307 1 1417 182 94 42 chr15 22507340 22507626 -78872895 + AluJb SINE Alu 3 303 -9 224 274 97 0 chr15 22508444 22508557 -78871964 - MER5B DNA MER1_type -1 177 54 363 323 41 19 chr15 22508575 22508762 -78871759 - MIR SINE MIR -59 149 3 24 0 0 0 chr15 22509244 22509268 -78871253 + AT_rich Low_complexity Low_complexity 1 24 0 291 234 170 50 chr15 22509768 22509871 -78870650 + MIR SINE MIR 25 151 -57 2542 99 29 0 chr15 22509871 22510216 -78870305 + THE1A LTR MaLR 1 355 0 291 234 170 50 chr15 22510216 22510253 -78870268 + MIR SINE MIR 151 182 -26 1681 183 22 36 chr15 22511447 22511803 -78868718 - MLT1A1 LTR MaLR 0 365 15 360 294 171 0 chr15 22511965 22512111 -78868410 + MER5A DNA MER1_type 19 189 0 331 169 99 0 chr15 22512590 22512661 -78867860 - MLT2B1 LTR ERVL -435 85 8 1088 119 0 40 chr15 22513016 22513192 -78867329 + AluSq SINE Alu 140 308 -5 2010 110 3 3 chr15 22513742 22514041 -78866480 - AluSp SINE Alu -14 299 1 3572 272 105 30 chr15 22518160 22519825 -78860696 + L1MEc LINE L1 15 1804 -4592 188 67 33 0 chr15 22521576 22521606 -78858915 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 744 153 0 0 chr15 22521610 22521721 -78858800 - FLAM_C SINE Alu -32 111 1 2248 110 0 0 chr15 22522432 22522740 -78857781 - AluSx SINE Alu -4 308 1 281 297 110 0 chr15 22523109 22523200 -78857321 + MIR SINE MIR 96 196 -66 533 94 106 12 chr15 22523340 22523425 -78857096 + HY4 scRNA scRNA 1 93 0 23 0 0 0 chr15 22523425 22523448 -78857073 + AT_rich Low_complexity Low_complexity 1 23 0 2016 175 54 26 chr15 22523773 22524236 -78856285 + L1 LINE L1 4456 4931 -1215 256 346 10 29 chr15 22524834 22524938 -78855583 + L2 LINE L2 3171 3272 0 1525 236 61 21 chr15 22525300 22525774 -78854747 + MLT1D LTR MaLR 6 498 -7 218 233 53 41 chr15 22526736 22526847 -78853674 - MIR SINE MIR -48 214 106 785 250 9 14 chr15 22527947 22528163 -78852358 - MER96B DNA MER1_type? -195 222 8 1040 142 21 16 chr15 22528468 22528658 -78851863 - AluJb SINE Alu -7 305 115 2353 144 64 0 chr15 22530936 22531360 -78849161 + L1MA7 LINE L1 5835 6285 -6 1439 143 135 12 chr15 22531810 22532069 -78848452 - AluJb SINE Alu -21 291 1 2372 117 90 12 chr15 22532093 22532494 -78848027 - MSTB1 LTR MaLR 0 432 1 22 0 0 0 chr15 22533861 22533883 -78846638 + AT_rich Low_complexity Low_complexity 1 22 0 240 352 29 9 chr15 22534056 22534161 -78846360 + MIR3 SINE MIR 93 199 -9 2352 81 0 0 chr15 22535055 22535352 -78845169 + AluSp SINE Alu 1 297 -16 1390 155 9 94 chr15 22536539 22536880 -78843641 + AluJo SINE Alu 1 312 0 1051 112 31 0 chr15 22536980 22537141 -78843380 + AluSg/x SINE Alu 133 298 -12 858 231 23 14 chr15 22538277 22538493 -78842028 + MER20 DNA MER1_type 1 218 -1 243 0 0 0 chr15 22538633 22538660 -78841861 + (CA)n Simple_repeat Simple_repeat 1 27 0 1711 146 3 14 chr15 22538965 22539259 -78841262 + AluJb SINE Alu 1 291 -21 346 315 74 31 chr15 22539881 22540043 -78840478 + MIR SINE MIR 73 241 -21 1527 177 7 17 chr15 22540475 22540609 -78839912 + AluJo SINE Alu 3 137 -175 2182 82 0 0 chr15 22540609 22540923 -78839598 + AluY SINE Alu 1 311 0 1527 177 7 17 chr15 22540923 22541088 -78839433 + AluJo SINE Alu 137 299 -13 3124 192 112 36 chr15 22541298 22541444 -78839077 - L1MB8 LINE L1 -10 6168 6034 1569 179 0 27 chr15 22541444 22541741 -78838780 - AluJo SINE Alu -23 289 1 3124 192 112 36 chr15 22541741 22542543 -78837978 - L1MB8 LINE L1 -144 6034 5154 446 116 74 0 chr15 22542547 22542642 -78837879 - L1MA8 LINE L1 -5 6286 6185 375 145 48 46 chr15 22542667 22542720 -78837801 + L1MA8 LINE L1 6073 6124 -167 2129 89 26 0 chr15 22542720 22543023 -78837498 - AluY SINE Alu 0 311 1 375 145 48 46 chr15 22543023 22543078 -78837443 + L1MA8 LINE L1 6124 6184 -107 279 59 0 0 chr15 22543124 22543158 -78837363 + L1MA8 LINE L1 6182 6215 -76 234 125 25 0 chr15 22543128 22543168 -78837353 + L1MA7 LINE L1 6186 6226 -65 * 2029 139 0 0 chr15 22543439 22543748 -78836773 + AluSx SINE Alu 1 309 -3 1469 169 23 0 chr15 22543763 22544024 -78836497 - L1MA5 LINE L1 -9 6291 6025 1654 240 52 9 chr15 22544382 22544820 -78835701 - MLT1C LTR MaLR 0 467 11 243 310 98 44 chr15 22546635 22547022 -78833499 + L2 LINE L2 2566 2973 -341 326 224 139 73 chr15 22547764 22548023 -78832498 + L1ME4a LINE L1 5589 5864 -257 5084 218 83 37 chr15 22548062 22549887 -78830634 - L1M4 LINE L1 -3139 3505 1766 1572 148 0 0 chr15 22549887 22550152 -78830369 - AluSx SINE Alu 0 322 58 1646 170 7 14 chr15 22550155 22550444 -78830077 - AluJb SINE Alu -25 287 1 5084 218 83 37 chr15 22550444 22551673 -78828848 - L1M4 LINE L1 -4879 1765 282 198 0 0 0 chr15 22551678 22551700 -78828821 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 678 220 68 0 chr15 22551710 22551842 -78828679 - FRAM SINE Alu -35 141 1 1072 209 8 32 chr15 22551853 22552106 -78828415 - L1M4 LINE L1 -6289 253 7 1597 179 16 7 chr15 22552218 22552526 -78827995 - AluJb SINE Alu -1 311 1 615 313 0 6 chr15 22552678 22552857 -78827664 + MER58A DNA MER1_type 46 223 -1 224 365 56 0 chr15 22553277 22553384 -78827137 + MIR SINE MIR 80 192 -70 192 306 120 19 chr15 22554076 22554184 -78826337 + MIR SINE MIR 33 151 -57 281 256 105 0 chr15 22554511 22554597 -78825924 - L1ME4a LINE L1 -222 5899 5805 1499 172 38 7 chr15 22554889 22555180 -78825341 - AluJo SINE Alu 0 312 13 392 276 163 63 chr15 22555198 22555517 -78825004 - L1ME4a LINE L1 -787 5359 5009 447 320 115 40 chr15 22555746 22556243 -78824278 - L1ME4a LINE L1 -1456 4690 4157 4983 157 39 4 chr15 22556255 22557352 -78823169 - L1PB4 LINE L1 -7 6149 5016 893 208 120 0 chr15 22759548 22759916 -78620605 + LTR54 LTR ERV1 1 450 -60 785 245 63 100 chr15 22759947 22760506 -78620015 - MLT1E LTR MaLR -4 589 1 1200 230 109 35 chr15 22760832 22761236 -78619285 - MER57B LTR ERV1 0 434 1 182 330 11 23 chr15 22761458 22761546 -78618975 - L2 LINE L2 -255 3017 2931 1040 162 47 11 chr15 22762900 22763091 -78617430 + MLT1A1 LTR MaLR 9 206 -159 2022 192 8 6 chr15 22763135 22763495 -78617026 - MLT1A1 LTR MaLR 0 365 5 1644 219 24 4 chr15 22763499 22763869 -78616652 - MLT1A1-int LTR MaLR 0 1651 1306 3027 179 22 72 chr15 22764241 22764444 -78616077 - MLT1A1-int LTR MaLR -1031 704 492 2354 90 40 0 chr15 22764444 22764745 -78615776 - AluSq SINE Alu 0 313 1 3027 179 22 72 chr15 22764745 22765282 -78615239 - MLT1A1-int LTR MaLR -1243 492 1 186 189 0 0 chr15 22765282 22765319 -78615202 + T-rich Low_complexity Low_complexity 1 37 0 2404 105 0 9 chr15 22765321 22765636 -78614885 - AluSx SINE Alu 0 312 1 1736 188 79 9 chr15 22765645 22765986 -78614535 - MLT1A1 LTR MaLR 0 365 1 199 353 12 12 chr15 22767156 22767241 -78613280 + L2 LINE L2 3188 3272 0 225 264 127 9 chr15 22767545 22767655 -78612866 - L2 LINE L2 -223 3049 2927 642 275 85 35 chr15 22767984 22768094 -78612427 + MLT1C LTR MaLR 3 106 -361 2372 92 0 10 chr15 22768094 22768397 -78612124 - AluSc SINE Alu -7 302 3 642 275 85 35 chr15 22768397 22768725 -78611796 + MLT1C LTR MaLR 106 464 -3 748 210 82 20 chr15 22769827 22770022 -78610499 + MLT2B2 LTR ERVL 1 207 -308 390 233 11 0 chr15 22770058 22770148 -78610373 + MLT2D LTR ERVL 316 406 -8 290 302 56 16 chr15 22770423 22770549 -78609972 + MIR SINE MIR 126 256 -6 1139 219 77 28 chr15 22770570 22770922 -78609599 + MLT1C LTR MaLR 6 374 -93 1326 211 111 4 chr15 22771944 22772060 -78608461 + AluJo SINE Alu 1 103 -209 213 39 0 0 chr15 22772060 22772086 -78608435 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1326 211 111 4 chr15 22772086 22772248 -78608273 + AluJo SINE Alu 103 309 -3 749 214 0 0 chr15 22772273 22772404 -78608117 + FLAM_A SINE Alu 1 131 -2 492 271 171 65 chr15 22772476 22772967 -78607554 + MLT1H LTR MaLR 7 549 0 43 47 0 0 chr15 22773180 22773244 -78607277 + AT_rich Low_complexity Low_complexity 1 64 0 2317 97 3 31 chr15 22773911 22774232 -78606289 - AluSp SINE Alu -1 312 1 495 219 0 0 chr15 22776970 22777075 -78603446 + MER45A DNA AcHobo 72 176 -2 35 24 0 0 chr15 22778531 22778573 -78601948 + AT_rich Low_complexity Low_complexity 1 42 0 1063 178 14 14 chr15 22779237 22779451 -78601070 + MLT1A1 LTR MaLR 1 214 -151 3718 103 19 17 chr15 22779451 22779977 -78600544 - MER1A DNA MER1_type 0 527 1 5074 153 37 9 chr15 22780581 22781808 -78598713 + L1PA16 LINE L1 4730 5999 -167 1989 106 81 0 chr15 22781808 22782091 -78598430 + AluSx SINE Alu 1 306 -6 5074 153 37 9 chr15 22782091 22782262 -78598259 + L1PA16 LINE L1 5999 6164 -2 238 353 0 17 chr15 22782806 22782925 -78597596 + MER58 DNA MER1_type 10 126 -2294 1692 185 34 25 chr15 22783248 22783604 -78596917 + MER46B DNA MER2_type 1 234 -2 526 154 0 39 chr15 22783724 22783828 -78596693 - L1MA6 LINE L1 0 6300 6201 1445 141 4 21 chr15 22783892 22784126 -78596395 + AluJb SINE Alu 1 230 -82 181 358 52 22 chr15 22784433 22784567 -78595954 + L3b LINE CR1 1102 1239 -344 2090 99 57 3 chr15 22785183 22785465 -78595056 - AluSc SINE Alu -12 297 1 247 340 81 36 chr15 22787131 22787440 -78593081 - L1MC/D LINE L1 -1976 5832 5510 367 335 51 10 chr15 22789210 22789407 -78591114 - L2 LINE L2 -10 3303 3099 473 175 28 34 chr15 22789422 22789967 -78590554 + (TG)n Simple_repeat Simple_repeat 1 542 0 243 79 0 0 chr15 22790085 22790123 -78590398 + (CGGGGG)n Simple_repeat Simple_repeat 3 40 0 1242 145 291 27 chr15 22790327 22790664 -78589857 - MSTA LTR MaLR 0 428 3 191 281 61 37 chr15 22791256 22791338 -78589183 - MER5B DNA MER1_type -82 96 13 1890 166 0 12 chr15 22791558 22791901 -78588620 - L1MB5 LINE L1 -194 6478 6140 1752 156 43 3 chr15 22791912 22792238 -78588283 + MER47A DNA MER2_type 28 366 0 1220 167 31 0 chr15 22792242 22792470 -78588051 - L1MB5 LINE L1 -540 6138 5904 * 3256 226 64 29 chr15 22792464 22793522 -78586999 - L1MB5 LINE L1 -1621 5023 3929 436 320 101 4 chr15 22793647 22793875 -78586646 - L1MB5 LINE L1 -6291 251 2 191 259 12 86 chr15 22794554 22794635 -78585886 - MIR3 SINE MIR -8 200 126 1765 73 20 4 chr15 22794743 22794988 -78585533 + L1PA10 LINE L1 5918 6166 -2 1740 149 11 0 chr15 22795883 22796152 -78584369 + AluSx SINE Alu 41 312 0 390 362 54 0 chr15 22796427 22796612 -78583909 - MIR SINE MIR -1 261 67 2089 98 79 25 chr15 22797797 22798153 -78582368 + THE1C LTR MaLR 1 375 0 759 233 132 35 chr15 22798226 22798517 -78582004 - MLT1E2 LTR MaLR -258 396 51 469 278 115 53 chr15 22798589 22798798 -78581723 - MIR SINE MIR -35 227 6 1304 167 40 4 chr15 22802250 22802478 -78578043 - MER46A DNA MER2_type 0 236 1 1896 216 98 5 chr15 22803449 22803876 -78576645 - MLT1C LTR MaLR 0 467 1 371 252 86 29 chr15 22804482 22804621 -78575900 - L2 LINE L2 -2 3311 3165 1972 129 0 4 chr15 22804699 22804978 -78575543 + AluSx SINE Alu 27 304 -8 227 318 45 23 chr15 22807245 22807377 -78573144 - LTR16B LTR ERVL -6 458 324 3248 233 38 55 chr15 22807666 22809676 -78570845 + L1MD2 LINE L1 4147 6133 -226 254 231 201 22 chr15 22809682 22809816 -78570705 + L1MD2 LINE L1 6191 6348 -11 21 0 0 0 chr15 22811345 22811366 -78569155 + AT_rich Low_complexity Low_complexity 1 21 0 2003 115 0 11 chr15 22811839 22812175 -78568346 + AluSx SINE Alu 1 333 0 228 226 0 19 chr15 22812472 22812525 -78567996 + C-rich Low_complexity Low_complexity 1 52 0 22 35 7 0 chr15 22815632 22815708 -78564813 + GC_rich Low_complexity Low_complexity 1 36 0 22 103 0 0 chr15 22815746 22815824 -78564697 + GC_rich Low_complexity Low_complexity 1 78 0 943 155 0 12 chr15 22816685 22816853 -78563668 + AluJb SINE Alu 1 166 -146 1920 121 0 0 chr15 22817291 22817564 -78562957 - AluSx SINE Alu -36 276 4 719 252 133 13 chr15 22817641 22817875 -78562646 - MIR SINE MIR 0 262 1 2785 10 0 0 chr15 22818406 22818717 -78561804 + AluYb8 SINE Alu 1 311 -7 289 276 0 23 chr15 22819382 22819469 -78561052 - L1ME3 LINE L1 -7 6155 6071 1877 177 88 20 chr15 22820954 22821048 -78559473 - L1MC2 LINE L1 0 6344 6258 361 36 36 0 chr15 22821048 22821103 -78559418 + (CA)n Simple_repeat Simple_repeat 2 58 0 1877 177 88 20 chr15 22821103 22821449 -78559072 - L1MC2 LINE L1 -86 6258 5874 315 291 103 14 chr15 22821900 22822266 -78558255 - L1ME LINE L1 -4869 1671 1262 2635 124 41 5 chr15 22822372 22822783 -78557738 - MSTB LTR MaLR 0 426 1 22 0 0 0 chr15 22823713 22823735 -78556786 + AT_rich Low_complexity Low_complexity 1 22 0 408 289 162 7 chr15 22823936 22824078 -78556443 + MER5A DNA MER1_type 18 181 -8 507 335 31 11 chr15 22825998 22826189 -78554332 - L2 LINE L2 0 3313 3119 2013 113 3 0 chr15 22826410 22826694 -78553827 + AluSg SINE Alu 1 285 -25 2232 175 31 26 chr15 22826820 22827277 -78553244 + MLT1C LTR MaLR 9 467 0 3969 112 28 0 chr15 22827322 22827886 -78552635 - LTR19B LTR ERV1 0 580 1 629 207 39 96 chr15 22828110 22828318 -78552203 - MLT1A1 LTR MaLR -2 363 168 797 199 145 11 chr15 22828944 22829310 -78551211 - MER31B LTR ERV1 0 543 1 1764 157 7 0 chr15 22831194 22831481 -78549040 - AluJb SINE Alu -23 289 1 282 289 11 22 chr15 22833102 22833192 -78547329 - MLT1J1 LTR MaLR -141 305 217 330 286 62 34 chr15 22833206 22833384 -78547137 - MLT1J LTR MaLR -327 184 2 458 327 44 10 chr15 22835883 22836088 -78544433 - L3 LINE CR1 -151 1426 1215 1652 134 0 96 chr15 22836289 22836632 -78543889 + AluY SINE Alu 1 310 -1 197 357 31 10 chr15 22836860 22836958 -78543563 + MIR3 SINE MIR 102 201 -7 1997 136 110 18 chr15 22837310 22837700 -78542821 + MSTB LTR MaLR 1 426 0 218 176 20 0 chr15 22839182 22839233 -78541288 + (TGAA)n Simple_repeat Simple_repeat 3 54 0 309 266 187 12 chr15 22841395 22841636 -78538885 + LTR16A1 LTR ERVL 75 357 -100 439 248 16 16 chr15 22841730 22841855 -78538666 + LTR67 LTR ERVL 426 550 -7 1204 203 127 152 chr15 22841877 22842655 -78537866 - LTR41 LTR ERVL -10 763 5 389 279 36 89 chr15 22843491 22843738 -78536783 + L1ME4a LINE L1 5885 6118 -3 252 212 30 15 chr15 22846329 22846395 -78534126 + CT-rich Low_complexity Low_complexity 4 70 0 386 312 95 18 chr15 22846512 22846797 -78533724 - MLT1J1 LTR MaLR -8 438 132 198 0 0 0 chr15 22846988 22847010 -78533511 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 782 286 84 35 chr15 22847642 22847897 -78532624 - MLT1E LTR MaLR 0 593 321 1949 110 52 55 chr15 22847897 22848262 -78532259 - THE1B LTR MaLR 0 364 1 782 286 84 35 chr15 22848262 22848293 -78532228 - MLT1E LTR MaLR -272 321 293 250 304 13 0 chr15 22848371 22848450 -78532071 - MLT1E LTR MaLR -436 157 78 2041 122 0 3 chr15 22848568 22848871 -78531650 - AluSg SINE Alu -8 302 1 2223 89 7 0 chr15 22852349 22852651 -78527870 - AluSx SINE Alu -8 304 1 4796 172 35 22 chr15 22852787 22854098 -78526423 + L1MB3 LINE L1 4849 6175 -8 1629 201 0 7 chr15 22855533 22855837 -78524684 - AluJo SINE Alu -10 302 1 940 218 13 0 chr15 22856201 22856426 -78524095 - L1MA4 LINE L1 -3 6297 6070 2287 63 0 16 chr15 22856679 22856994 -78523527 + AluY SINE Alu 1 310 -1 327 305 35 0 chr15 22857188 22857318 -78523203 + MIR SINE MIR 25 166 -96 253 264 239 39 chr15 22857821 22857976 -78522545 - MIR SINE MIR -26 236 51 2570 51 0 6 chr15 22858025 22858337 -78522184 + AluY SINE Alu 1 310 -1 286 290 0 0 chr15 22859186 22859255 -78521266 + MIR SINE MIR 76 144 -64 644 300 59 39 chr15 22859520 22859857 -78520664 + L1MB1 LINE L1 242 585 -5546 239 125 429 0 chr15 22860072 22860128 -78520393 + MADE1 DNA Mariner 1 80 0 376 257 30 10 chr15 22860150 22860252 -78520269 + L1M3d LINE L1 898 999 -5132 * 3923 230 66 64 chr15 22860242 22861087 -78519434 + L1MB1 LINE L1 662 1504 -4706 449 161 0 0 chr15 22861087 22861168 -78519353 + AluJ/FRAM SINE Alu 232 312 0 3923 230 66 64 chr15 22861168 22861707 -78518814 + L1MB1 LINE L1 1504 2040 -4170 2619 36 0 10 chr15 22861707 22862010 -78518511 + AluY SINE Alu 1 300 -11 3923 230 66 64 chr15 22862010 22863307 -78517214 + L1MB1 LINE L1 2040 3435 -2775 2697 236 30 10 chr15 22863311 22864043 -78516478 + L1MB1 LINE L1 4493 5239 -971 1151 184 22 4 chr15 22864040 22864268 -78516253 + L1MB1 LINE L1 5778 6009 -223 * 505 287 35 54 chr15 22864506 22864767 -78515754 - L2 LINE L2 -4 3309 3054 689 346 26 8 chr15 22864896 22865402 -78515119 + L1MEc LINE L1 1284 1798 -4598 2481 61 0 3 chr15 22865530 22865827 -78514694 - AluY SINE Alu -15 296 1 452 291 30 39 chr15 22866346 22866580 -78513941 - L1ME2 LINE L1 -10 6154 5923 * 871 234 68 0 chr15 22866577 22866825 -78513696 + L1ME2 LINE L1 5647 5911 -253 3391 98 34 23 chr15 22867006 22867535 -78512986 - L1PA14 LINE L1 -1 6160 5626 1381 176 0 5 chr15 22869381 22869602 -78510919 - AluJb SINE Alu -21 291 72 1656 107 5 32 chr15 22870892 22871419 -78509102 + MER4B LTR ERV1 1 610 0 279 324 6 59 chr15 22871427 22871581 -78508940 - MIR SINE MIR -62 146 24 276 30 0 0 chr15 22871852 22871885 -78508636 + (GA)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr15 22872116 22872138 -78508383 + AT_rich Low_complexity Low_complexity 1 22 0 199 377 0 0 chr15 22872666 22872743 -78507778 + L2 LINE L2 3196 3272 0 256 300 12 12 chr15 22872891 22872971 -78507550 + Charlie8 DNA MER1_type 154 233 -2184 1889 284 86 57 chr15 22873012 22874151 -78506370 + L1MC4a LINE L1 -244 927 -5353 1802 254 36 39 chr15 22874189 22875024 -78505497 + L1MC4a LINE L1 1314 2307 -4256 2490 207 33 37 chr15 22875031 22875686 -78504835 + L1MC4a LINE L1 2329 2981 -3401 1522 164 114 18 chr15 22875686 22875966 -78504555 - AluJb SINE Alu -5 307 1 2490 207 33 37 chr15 22875966 22876037 -78504484 + L1MC4a LINE L1 2981 3051 -3331 376 304 62 0 chr15 22876038 22876150 -78504371 + MER94 DNA DNA 15 133 -1 704 110 0 42 chr15 22876377 22876495 -78504026 - L1MA3 LINE L1 -19 6286 6174 793 165 15 0 chr15 22876622 22876755 -78503766 - AluJo SINE Alu -171 141 7 5265 182 37 7 chr15 22876965 22877651 -78502870 - L1 LINE L1 -1049 5097 4365 207 0 0 0 chr15 22877651 22877674 -78502847 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 5265 182 37 7 chr15 22877674 22878060 -78502461 - L1 LINE L1 -1781 4365 3992 5383 160 14 23 chr15 22878067 22878276 -78502245 + L1MA7 LINE L1 5042 5251 -1040 2072 122 26 13 chr15 22878276 22878580 -78501941 - AluSx SINE Alu 0 312 5 5383 160 14 23 chr15 22878580 22879617 -78500904 + L1MA7 LINE L1 5251 6281 -10 229 239 150 17 chr15 22879664 22879898 -78500623 + L1MC4a LINE L1 3199 3463 -2919 450 53 0 0 chr15 22880145 22880202 -78500319 + (CA)n Simple_repeat Simple_repeat 2 58 0 240 35 0 0 chr15 22880201 22880230 -78500291 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 241 264 41 50 chr15 22880235 22880356 -78500165 + L1MC4a LINE L1 3759 3878 -2504 413 329 82 30 chr15 22880569 22881675 -78498846 + L1MC4a LINE L1 4306 5469 -913 3443 243 83 110 chr15 22881705 22881804 -78498717 + L1MC4a LINE L1 5518 5618 -2426 2340 113 0 0 chr15 22881804 22882114 -78498407 - AluSg SINE Alu 0 310 1 3443 243 83 110 chr15 22882114 22884460 -78496061 + L1MC4a LINE L1 5618 7897 -147 1549 294 86 11 chr15 22886264 22886420 -78494101 + L1ME3 LINE L1 5272 5415 -747 2287 79 3 13 chr15 22886420 22886724 -78493797 + AluSc SINE Alu 1 301 -8 1549 294 86 11 chr15 22886724 22887230 -78493291 + L1ME3 LINE L1 5415 5984 -178 1860 97 0 73 chr15 22887351 22887665 -78492856 + AluSx SINE Alu 20 312 0 1158 183 10 0 chr15 22888356 22888558 -78491963 + AluJb SINE Alu 103 306 -6 368 183 11 0 chr15 22888565 22888658 -78491863 + GA-rich Low_complexity Low_complexity 3 96 0 22 56 0 0 chr15 22890342 22890378 -78490143 + AT_rich Low_complexity Low_complexity 1 36 0 3324 110 24 24 chr15 22890509 22891121 -78489400 + L1PA15 LINE L1 5069 5681 -484 1799 174 10 3 chr15 22891121 22891420 -78489101 + AluJb SINE Alu 1 301 -11 3324 110 24 24 chr15 22891420 22891497 -78489024 + L1PA15 LINE L1 5681 5756 -409 940 166 7 0 chr15 22891504 22891655 -78488866 + FRAM SINE Alu 9 160 -16 2134 122 18 9 chr15 22891655 22891991 -78488530 + L1PA15 LINE L1 5814 6152 -13 2107 123 3 0 chr15 22891998 22892300 -78488221 + AluSx SINE Alu 1 303 -9 352 298 191 6 chr15 22892675 22892843 -78487678 + MLT1H LTR MaLR 83 281 -268 283 170 0 0 chr15 22892869 22892916 -78487605 + L1M1 LINE L1 5816 5862 -438 1313 92 0 0 chr15 22893132 22893305 -78487216 + AluSc SINE Alu 134 306 -3 249 33 0 0 chr15 22893427 22893457 -78487064 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 235 300 190 0 chr15 22893600 22893700 -78486821 + MLT1H LTR MaLR 431 549 0 6116 76 47 37 chr15 22893830 22895339 -78485182 + SVA Other Other 327 1449 0 1000 182 0 18 chr15 22895480 22895677 -78484844 - AluJo SINE Alu 0 312 135 338 141 0 16 chr15 22895677 22895741 -78484780 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 770 176 8 0 chr15 22895741 22895872 -78484649 - AluJo SINE Alu -169 133 2 261 0 0 0 chr15 22896597 22896626 -78483895 + (A)n Simple_repeat Simple_repeat 1 29 0 810 281 9 5 chr15 22897229 22897446 -78483075 + L1MEc LINE L1 32 249 -6147 2258 264 36 70 chr15 22897469 22897631 -78482890 + L1MEc LINE L1 415 581 -5815 2541 127 7 56 chr15 22897631 22898081 -78482440 - MSTA LTR MaLR 0 428 1 2258 264 36 70 chr15 22898081 22899117 -78481404 + L1MEc LINE L1 581 1572 -4824 1142 215 66 51 chr15 22899117 22899452 -78481069 + MER2 DNA MER2_type 5 344 0 2258 264 36 70 chr15 22899452 22899489 -78481032 + L1MEc LINE L1 1572 1609 -4787 2008 324 82 30 chr15 22899513 22900391 -78480130 + L1M4b LINE L1 -562 361 -5923 577 256 65 38 chr15 22900963 22901563 -78478958 + L1M4b LINE L1 655 1238 -5325 2282 68 0 10 chr15 22901563 22901855 -78478666 + AluY SINE Alu 1 289 -22 270 0 0 0 chr15 22901863 22901893 -78478628 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 577 256 65 38 chr15 22901893 22902351 -78478170 + L1M4b LINE L1 1244 1989 -4574 25 31 0 0 chr15 22902439 22902471 -78478050 + AT_rich Low_complexity Low_complexity 1 32 0 2362 254 29 16 chr15 22902943 22903791 -78476730 + L1M4b LINE L1 2299 3112 -3270 13488 162 24 19 chr15 22903796 22906497 -78474024 + L1MA2 LINE L1 3022 5706 -2017 2387 87 3 0 chr15 22906497 22906806 -78473715 + AluY SINE Alu 1 310 -1 13488 162 24 19 chr15 22906806 22907437 -78473084 + L1MA2 LINE L1 5706 6332 -1391 2059 124 0 0 chr15 22907437 22907711 -78472810 + AluSg SINE Alu 25 298 -12 13488 162 24 19 chr15 22907711 22909024 -78471497 + L1MA2 LINE L1 6332 7721 -2 1571 218 66 61 chr15 22909055 22909614 -78470907 + L1MB7 LINE L1 5613 6174 -10 2696 234 76 26 chr15 22909650 22910855 -78469666 + L1MEc LINE L1 1997 3242 -2973 249 276 0 0 chr15 22910938 22910996 -78469525 + MIR3 SINE MIR 149 206 -2 1696 71 0 5 chr15 22911296 22911506 -78469015 - AluY SINE Alu -69 242 34 1631 152 4 12 chr15 22914731 22914987 -78465534 - AluJo SINE Alu -19 293 40 317 324 9 19 chr15 22916457 22916565 -78463956 - MIR3 SINE MIR -18 190 84 564 262 38 0 chr15 22916974 22917157 -78463364 + L1M4 LINE L1 2687 2876 -3270 307 190 0 0 chr15 22917165 22917223 -78463298 + L1ME LINE L1 5685 5742 -422 1326 99 0 20 chr15 22917343 22917544 -78462977 - L1PA13 LINE L1 -4 6159 5963 2446 198 118 39 chr15 22917544 22917728 -78462793 + L1M4 LINE L1 2867 3035 -3111 2359 74 0 16 chr15 22917728 22918040 -78462481 - AluY SINE Alu -4 307 1 2446 198 118 39 chr15 22918040 22918831 -78461690 + L1M4 LINE L1 3035 3919 -2227 22 35 0 0 chr15 22969893 22969922 -78410599 + AT_rich Low_complexity Low_complexity 1 29 0 1504 223 76 3 chr15 22970079 22970446 -78410075 + MER89 LTR ERV1 166 559 0 890 173 162 5 chr15 22970772 22970957 -78409564 + AluJo SINE Alu 81 294 -18 33 25 0 0 chr15 22971644 22971684 -78408837 + AT_rich Low_complexity Low_complexity 1 40 0 1983 157 141 11 chr15 22971735 22972044 -78408477 + MSTB LTR MaLR 3 371 -55 2049 103 65 3 chr15 22972044 22972335 -78408186 - AluSg SINE Alu -1 309 1 1983 157 141 11 chr15 22972335 22972400 -78408121 + MSTB LTR MaLR 371 426 0 36 65 0 49 chr15 22973017 22973140 -78407381 + AT_rich Low_complexity Low_complexity 1 117 0 795 153 13 38 chr15 22973140 22973297 -78407224 - FRAM SINE Alu -26 150 1 2378 165 85 6 chr15 22973594 22974395 -78406126 - L1M2 LINE L1 -536 5755 4895 1340 172 93 26 chr15 22974447 22974715 -78405806 - AluJo SINE Alu -25 287 2 3603 153 38 11 chr15 22975370 22976003 -78404518 - L1MA5 LINE L1 0 6300 5651 2253 174 62 24 chr15 22976243 22976709 -78403812 + MER72 LTR ERV1 239 722 0 1066 151 25 10 chr15 22978628 22978827 -78401694 - MER65A LTR ERV1 0 445 244 22 0 0 0 chr15 22978934 22978956 -78401565 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr15 22979146 22979169 -78401352 + AT_rich Low_complexity Low_complexity 1 23 0 406 285 65 27 chr15 22979362 22979548 -78400973 + L1ME2 LINE L1 5707 5899 -265 349 262 44 44 chr15 22979594 22979833 -78400688 - L1ME LINE L1 -5007 1076 834 1179 129 0 0 chr15 22979839 22980009 -78400512 - AluSp SINE Alu -7 306 137 557 285 52 22 chr15 22980019 22980133 -78400388 - L1ME LINE L1 -5194 876 767 2062 119 22 19 chr15 22980133 22980445 -78400076 - AluSq SINE Alu 0 313 1 557 285 52 22 chr15 22980445 22980700 -78399821 - L1ME LINE L1 -5303 767 508 2133 142 0 0 chr15 22981513 22981816 -78398705 - AluSq SINE Alu 0 313 11 1378 66 12 0 chr15 22981971 22982137 -78398384 + L1PA7 LINE L1 5985 6152 -2 21 0 0 0 chr15 22982148 22982169 -78398352 + AT_rich Low_complexity Low_complexity 1 21 0 2469 122 98 0 chr15 22982172 22982550 -78397971 + MER4C LTR ERV1 51 465 0 718 283 101 24 chr15 22982550 22983097 -78397424 - L1MCa LINE L1 -3985 2622 2034 6944 140 46 9 chr15 22983109 22984291 -78396230 - Tigger3b DNA MER2_type -1 1230 6 384 284 36 47 chr15 22984456 22984701 -78395820 - L1MCa LINE L1 -4452 2155 1800 * 937 263 25 25 chr15 22984700 22984981 -78395540 + L1M4b LINE L1 400 680 -6179 24 0 0 0 chr15 22985599 22985623 -78394898 + AT_rich Low_complexity Low_complexity 1 24 0 596 248 25 12 chr15 22986089 22986250 -78394271 - MER5A DNA MER1_type -26 163 1 720 143 9 0 chr15 22986311 22986416 -78394105 + AluJb SINE Alu 2 107 -205 2144 165 98 73 chr15 22986783 22987347 -78393174 + MER34C LTR ERV1 1 578 -7 440 277 69 27 chr15 22988394 22988586 -78391935 - MIR SINE MIR -24 238 40 1282 177 53 87 chr15 22989211 22989589 -78390932 + MLT1A1 LTR MaLR 1 365 0 324 0 0 0 chr15 22991868 22991904 -78388617 + (CA)n Simple_repeat Simple_repeat 1 36 0 4797 140 24 40 chr15 22992702 22993135 -78387386 + L1PA14 LINE L1 4343 4781 -1380 2190 104 0 3 chr15 22993135 22993432 -78387089 + AluSx SINE Alu 1 296 -16 4797 140 24 40 chr15 22993432 22994413 -78386108 + L1PA14 LINE L1 4781 5728 -433 3109 97 27 0 chr15 22994513 22994924 -78385597 + L1PA14 LINE L1 5735 6156 -5 1023 173 24 0 chr15 22995296 22995464 -78385057 - FRAM SINE Alu -10 166 1 1609 168 0 42 chr15 22995486 22995795 -78384726 - AluJb SINE Alu -16 296 1 240 111 0 0 chr15 22997155 22997191 -78383330 + (A)n Simple_repeat Simple_repeat 1 36 0 434 288 109 71 chr15 22997253 22997621 -78382900 + L2 LINE L2 2928 3309 -4 2005 112 54 20 chr15 22997696 22997992 -78382529 - AluSx SINE Alu -6 306 1 1721 70 19 0 chr15 22998960 22999173 -78381348 - L1PA7 LINE L1 -3 6151 5935 1953 39 0 4 chr15 22999173 22999402 -78381119 + L1PA7 LINE L1 5718 5945 -209 5692 170 110 78 chr15 23000416 23000992 -78379529 - L1MC3 LINE L1 -7 7778 7222 238 215 0 118 chr15 23000992 23001085 -78379436 - MLT1D LTR MaLR -443 124 43 5692 170 110 78 chr15 23001085 23001959 -78378562 - L1MC3 LINE L1 -563 7222 6187 781 274 109 38 chr15 23002019 23002602 -78377919 + L1MDa LINE L1 1423 2025 -4515 1029 114 60 0 chr15 23002670 23002819 -78377702 - AluSq SINE Alu -12 301 144 2952 117 3 0 chr15 23002819 23003211 -78377310 + MER1A DNA MER1_type 133 525 -4 396 200 0 0 chr15 23003226 23003296 -78377225 - MLT1D LTR MaLR -435 70 1 2465 77 3 0 chr15 23003365 23003664 -78376857 + AluY SINE Alu 1 300 -11 367 282 31 11 chr15 23003854 23004007 -78376514 - L1ME LINE L1 -567 5595 5434 533 289 58 0 chr15 23004208 23004416 -78376105 + L1MDa LINE L1 2858 3077 -3463 249 257 95 0 chr15 23005403 23005477 -78375044 - L2 LINE L2 -4 3268 3188 253 185 154 0 chr15 23007497 23007562 -78372959 - MIR3 SINE MIR -48 160 86 849 158 129 0 chr15 23008565 23008736 -78371785 + LOR1a LTR ERV1 1 193 -304 515 136 45 0 chr15 23008737 23008825 -78371696 + LOR1b LTR ERV1 370 461 0 190 328 156 26 chr15 23009366 23009558 -78370963 - L3 LINE CR1 -41 1536 1320 212 322 299 0 chr15 23009694 23009868 -78370653 - MIR SINE MIR 0 262 37 1758 180 59 73 chr15 23011220 23011703 -78368818 + LTR39 LTR ERV1 1 395 -388 230 158 0 0 chr15 23011673 23011711 -78368810 + MER4D LTR ERV1 244 281 -591 * 2105 175 29 11 chr15 23011749 23012126 -78368395 + LTR39 LTR ERV1 400 783 0 517 235 74 20 chr15 23013582 23013731 -78366790 + MER34 LTR ERV1 1 157 -385 941 189 112 58 chr15 23013797 23014056 -78366465 + AluJb SINE Alu 1 273 -39 671 62 0 14 chr15 23014790 23014890 -78365631 - L1P5 LINE L1 -387 5764 5672 3630 12 5 0 chr15 23014898 23015309 -78365212 + L1HS LINE L1 5741 6153 -2 268 43 21 21 chr15 23015314 23015361 -78365160 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 266 358 98 17 chr15 23017914 23018087 -78362434 - MIR SINE MIR -74 188 2 1273 157 50 5 chr15 23018417 23018822 -78361699 + LTR54 LTR ERV1 8 510 0 2063 159 31 48 chr15 23019111 23019532 -78360989 + L1MB3 LINE L1 5761 6174 -9 222 296 0 0 chr15 23021577 23021631 -78358890 + (TG)n Simple_repeat Simple_repeat 1 54 0 1775 171 39 47 chr15 23021989 23022370 -78358151 + MLT1B LTR MaLR 2 379 -11 480 155 0 0 chr15 23022630 23022769 -78357752 + AluS SINE Alu 227 365 0 231 314 35 0 chr15 23023082 23023168 -78357353 + MIR SINE MIR 51 139 -123 331 260 40 20 chr15 23023312 23023412 -78357109 - L2 LINE L2 0 3313 3212 14220 193 17 15 chr15 23024945 23029057 -78351464 + L1PA15 LINE L1 2047 6164 -1 678 299 104 8 chr15 23029367 23029732 -78350789 + L1ME LINE L1 5329 5728 -393 318 209 32 0 chr15 23030564 23030722 -78349799 + CT-rich Low_complexity Low_complexity 1 163 0 204 40 0 0 chr15 23030722 23030747 -78349774 + (CA)n Simple_repeat Simple_repeat 1 25 0 452 286 65 16 chr15 23031299 23031484 -78349037 + MER58A DNA MER1_type 26 219 -5 440 261 0 6 chr15 23032022 23032202 -78348319 + GA-rich Low_complexity Low_complexity 1 179 0 2117 166 119 5 chr15 23032268 23032647 -78347874 - MSTB LTR MaLR -4 422 1 7456 63 11 0 chr15 23032928 23034027 -78346494 - L1PA7 LINE L1 -3 6151 5049 2703 109 12 0 chr15 23034027 23034430 -78346091 + L1P LINE L1 3199 3606 -2540 489 214 10 0 chr15 23034835 23034933 -78345588 - Tigger5 DNA MER2_type 0 2323 2225 228 202 112 56 chr15 23035070 23035159 -78345362 + MIR SINE MIR 61 154 -108 240 266 159 18 chr15 23035182 23035295 -78345226 - MIR SINE MIR -9 253 125 273 226 107 0 chr15 23036051 23036135 -78344386 + L1MDb LINE L1 1013 1105 -5438 2161 138 0 0 chr15 23036149 23036461 -78344060 + AluSx SINE Alu 1 312 0 1991 100 38 0 chr15 23036464 23036725 -78343796 + AluSc SINE Alu 1 271 -38 264 149 0 0 chr15 23036733 23036780 -78343741 + (GA)n Simple_repeat Simple_repeat 2 48 0 3597 229 106 40 chr15 23036784 23038186 -78342335 + L1MDb LINE L1 1067 2560 -3980 44951 36 3 2 chr15 23038198 23044344 -78336177 + L1PA3 LINE L1 1 6154 -1 4802 176 90 10 chr15 23044362 23046049 -78334472 + L1PA16 LINE L1 4352 6166 0 3612 268 36 26 chr15 23046055 23047480 -78333041 + L1MDb LINE L1 2555 3993 -2547 230 263 18 0 chr15 23047517 23047574 -78332947 + L2 LINE L2 3180 3237 -76 2395 175 25 47 chr15 23047582 23048095 -78332426 + MER34B LTR ERV1 1 502 -63 189 147 0 0 chr15 23048133 23048167 -78332354 + MIR SINE MIR 218 251 -11 285 311 59 8 chr15 23048583 23048702 -78331819 + MIR SINE MIR 4 128 -134 258 384 64 5 chr15 23049394 23049613 -78330908 - MIR SINE MIR -20 242 11 257 127 38 51 chr15 23050044 23050123 -78330398 + (TTATA)n Simple_repeat Simple_repeat 3 80 0 186 171 0 0 chr15 23051392 23051433 -78329088 + (CA)n Simple_repeat Simple_repeat 1 41 0 4066 133 33 9 chr15 23052952 23053590 -78326931 + MER39B LTR ERV1 1 653 0 1739 176 124 21 chr15 23053884 23054321 -78326200 + MER31A LTR ERV1 1 542 -1 2078 173 71 149 chr15 23054366 23055152 -78325369 + LTR8A LTR ERV1 1 725 -2 207 178 22 22 chr15 23055417 23055462 -78325059 + L2 LINE L2 3026 3070 -202 300 250 48 48 chr15 23055860 23055964 -78324557 - MER103 DNA DNA -21 145 42 207 100 0 0 chr15 23056007 23056037 -78324484 + (T)n Simple_repeat Simple_repeat 1 30 0 519 238 81 104 chr15 23057059 23057441 -78323080 + L1MC5 LINE L1 6695 6965 -996 386 19 0 19 chr15 23057441 23057493 -78323028 + (GA)n Simple_repeat Simple_repeat 1 51 0 519 238 81 104 chr15 23057493 23057678 -78322843 + L1MC5 LINE L1 6965 7153 -808 1312 216 16 44 chr15 23058162 23058477 -78322044 - AluJo SINE Alu -6 306 1 982 257 120 14 chr15 23059887 23060245 -78320276 + MSTD LTR MaLR 1 396 0 474 120 0 0 chr15 23060494 23060569 -78319952 + (TA)n Simple_repeat Simple_repeat 1 75 0 1035 268 68 78 chr15 23061430 23062315 -78318206 - L1MEc LINE L1 -4110 2286 1411 370 214 0 12 chr15 23062316 23062400 -78318121 + MLT1A2 LTR MaLR 281 363 -11 309 307 84 46 chr15 23062591 23063044 -78317477 + L2 LINE L2 2808 3277 -36 1514 207 13 0 chr15 23063194 23063499 -78317022 - MLT1A1 LTR MaLR -2 363 55 319 280 19 0 chr15 23066503 23066610 -78313911 + L3 LINE CR1 1179 1287 -290 275 276 21 80 chr15 23067319 23067558 -78312963 + L1MC4 LINE L1 7455 7679 -363 406 266 114 45 chr15 23067687 23067977 -78312544 + L1MC4 LINE L1 7732 8041 -1 481 177 146 10 chr15 23068435 23068531 -78311990 - FRAM SINE Alu -25 151 43 613 175 0 10 chr15 23068656 23068759 -78311762 + AluJo SINE Alu 87 188 -124 506 206 10 0 chr15 23068757 23068859 -78311662 - AluJo/FLAM SINE Alu -209 103 1 * 359 265 31 95 chr15 23070277 23070594 -78309927 + L1M4 LINE L1 4896 5192 -954 1145 199 75 39 chr15 23070604 23070885 -78309636 + LTR40a LTR ERVL 229 519 0 252 284 30 67 chr15 23071064 23071198 -78309323 + HAL1 LINE L1 581 709 -1798 259 261 19 45 chr15 23071341 23071498 -78309023 + HAL1 LINE L1 926 1078 -1429 366 271 66 22 chr15 23071881 23072062 -78308459 + HAL1 LINE L1 1661 1849 -658 360 323 105 28 chr15 23072303 23072583 -78307938 + HAL1 LINE L1 2121 2435 -72 2111 143 0 0 chr15 23072583 23072877 -78307644 - AluSx SINE Alu -18 294 1 360 323 105 28 chr15 23072877 23072949 -78307572 + HAL1 LINE L1 2435 2500 -7 324 286 161 0 chr15 23074379 23074491 -78306030 - MIR SINE MIR -96 166 37 21 0 0 0 chr15 23075390 23075411 -78305110 + AT_rich Low_complexity Low_complexity 1 21 0 2386 244 63 49 chr15 23075419 23075745 -78304776 + L1MD1 LINE L1 27 347 -6193 2455 91 0 0 chr15 23075745 23076054 -78304467 - AluY SINE Alu -2 309 1 2386 244 63 49 chr15 23076054 23077084 -78303437 + L1MD1 LINE L1 347 1558 -4982 1792 240 41 21 chr15 23077135 23077751 -78302770 + L1M4 LINE L1 3544 4171 -1975 280 48 71 0 chr15 23077752 23077794 -78302727 + MER31A LTR ERV1 1 45 -440 1759 209 63 23 chr15 23077798 23078319 -78302202 + L1MCb LINE L1 603 1144 -4901 1432 245 57 33 chr15 23078372 23078911 -78301610 + L1M4 LINE L1 4431 4986 -1160 2532 37 0 3 chr15 23078911 23079210 -78301311 + AluY SINE Alu 1 298 -13 1432 245 57 33 chr15 23079210 23079245 -78301276 + L1M4 LINE L1 4986 5019 -1127 249 136 0 34 chr15 23079360 23079419 -78301102 + L1M LINE L1 5304 5360 -999 * 1759 270 46 16 chr15 23079405 23080206 -78300315 + L1MD1 LINE L1 4861 5685 -855 1423 246 35 22 chr15 23080206 23080609 -78299912 - MLT1D LTR MaLR -90 415 8 2063 183 27 11 chr15 23080612 23081060 -78299461 + L1MD1 LINE L1 6182 6636 0 258 253 40 0 chr15 23082045 23082120 -78298401 - MIR SINE MIR -111 151 74 324 196 0 0 chr15 23082309 23082365 -78298156 - MLT1D LTR MaLR -119 386 331 7262 235 55 51 chr15 23082377 23085588 -78294933 - L1M4 LINE L1 -1298 5346 2149 1981 128 0 11 chr15 23085588 23085898 -78294623 - AluY SINE Alu 0 308 2 7262 235 55 51 chr15 23085898 23086406 -78294115 - L1M4 LINE L1 -4495 2149 1644 778 0 31 0 chr15 23086406 23086503 -78294018 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 7262 235 55 51 chr15 23086503 23088047 -78292474 - L1M4 LINE L1 -5000 1644 16 1630 196 0 7 chr15 23088719 23088999 -78291522 + AluJo SINE Alu 1 278 -34 219 36 0 0 chr15 23089005 23089033 -78291488 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1549 168 80 18 chr15 23089052 23089338 -78291183 + AluJb SINE Alu 9 312 0 2068 101 5 69 chr15 23089484 23089859 -78290662 + THE1A LTR MaLR 5 355 0 1651 219 83 59 chr15 23090328 23090904 -78289617 + LTR68 LTR ERV1 21 610 -130 459 214 68 48 chr15 23091255 23091507 -78289014 + HAL1 LINE L1 899 1155 -1352 3999 184 73 12 chr15 23091633 23092444 -78288077 - MER21B LTR ERV1 -3 860 1 2517 162 30 48 chr15 23092506 23093030 -78287491 + MLT2B3 LTR ERVL 1 515 -39 258 105 0 0 chr15 23093055 23093093 -78287428 + (TCTG)n Simple_repeat Simple_repeat 3 40 0 607 247 77 13 chr15 23093163 23093398 -78287123 + HAL1 LINE L1 1338 1587 -920 329 245 47 0 chr15 23093882 23093988 -78286533 + HAL1 LINE L1 2287 2397 -110 2110 122 0 7 chr15 23096148 23096474 -78284047 - AluSg SINE Alu 0 310 1 1521 236 29 52 chr15 23098946 23099717 -78280804 + L1MB3 LINE L1 2798 3550 -2596 * 2521 158 31 8 chr15 23099714 23100414 -78280107 + L1M1 LINE L1 4899 5614 -686 6063 207 37 23 chr15 23100470 23103034 -78277487 + L1MB3 LINE L1 3554 6160 -23 908 136 0 0 chr15 23103889 23104021 -78276500 - FLAM_C SINE Alu -11 132 1 2085 183 38 2 chr15 23104590 23105017 -78275504 - L1MB3 LINE L1 -120 6063 5622 559 279 47 12 chr15 23105736 23105908 -78274613 + MIR SINE MIR 37 214 -48 1878 178 67 13 chr15 23106471 23106859 -78273662 - L1MA5 LINE L1 -1 6299 5891 1871 179 68 0 chr15 23108503 23108839 -78271682 - MLT1A1 LTR MaLR -6 359 1 517 280 45 40 chr15 23109592 23109792 -78270729 + MIR SINE MIR 32 232 -30 3606 80 35 8 chr15 23109846 23110334 -78270187 - L1MA2 LINE L1 -2 6302 5802 365 259 0 0 chr15 23110377 23110458 -78270063 + MIR SINE MIR 34 114 -148 227 233 0 33 chr15 23111684 23111744 -78268777 - Charlie8 DNA MER1_type 0 2417 2360 1541 290 36 63 chr15 23112021 23112625 -78267896 + MLT1E LTR MaLR 1 588 -5 1479 236 44 35 chr15 23112678 23113132 -78267389 - MER39 LTR ERV1 0 707 250 207 336 71 18 chr15 23113642 23113755 -78266766 + L3 LINE CR1 618 736 -841 512 297 102 25 chr15 23114097 23114333 -78266188 + MIR SINE MIR 9 262 0 21 0 0 0 chr15 23114339 23114360 -78266161 + AT_rich Low_complexity Low_complexity 1 21 0 270 303 311 8 chr15 23114379 23114511 -78266010 + L3 LINE CR1 1282 1453 -124 625 264 25 0 chr15 23114924 23115083 -78265438 + MIR SINE MIR 28 190 -72 1454 192 17 118 chr15 23115084 23115490 -78265031 - MLT1A1 LTR MaLR 0 365 1 222 219 0 0 chr15 23115504 23115545 -78264976 + CT-rich Low_complexity Low_complexity 2 42 0 1757 200 63 25 chr15 23115795 23116241 -78264280 + MER31B LTR ERV1 1 543 0 22 88 0 0 chr15 23117807 23117864 -78262657 + AT_rich Low_complexity Low_complexity 1 57 0 239 200 178 30 chr15 23117864 23117999 -78262522 + L1MC/D LINE L1 3030 3184 -2962 2666 230 82 26 chr15 23118112 23119231 -78261290 + L1MC/D LINE L1 4399 5587 -772 216 0 0 0 chr15 23119231 23119255 -78261266 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2666 230 82 26 chr15 23119255 23119289 -78261232 + L1MC/D LINE L1 5587 5618 -741 4498 246 126 58 chr15 23120508 23120848 -78259673 + L1MDa LINE L1 4 319 -6221 2013 113 10 7 chr15 23120848 23121139 -78259382 - AluSx SINE Alu -20 292 1 4498 246 126 58 chr15 23121139 23124022 -78256499 + L1MDa LINE L1 319 3432 -3108 727 174 0 9 chr15 23124023 23124138 -78256383 + 5S rRNA rRNA 2 115 -6 2245 169 125 5 chr15 23125433 23125841 -78254680 + MSTB2 LTR MaLR 1 457 0 869 260 174 0 chr15 23126016 23126297 -78254224 + MLT1F LTR MaLR 213 542 0 289 276 46 0 chr15 23126348 23126435 -78254086 - L2 LINE L2 -1 3312 3222 764 224 167 5 chr15 23127012 23127204 -78253317 + MER58A DNA MER1_type 2 224 0 2608 195 43 4 chr15 23127627 23128186 -78252335 + LTR69 LTR ERVL 1 581 -7 1839 211 49 0 chr15 23129220 23129628 -78250893 - L1MA6 LINE L1 0 6300 5873 204 254 16 0 chr15 23130203 23130266 -78250255 + (TA)n Simple_repeat Simple_repeat 2 65 0 1172 260 14 33 chr15 23131004 23131370 -78249151 + L1MEc LINE L1 36 394 -6002 * 3085 226 53 40 chr15 23131356 23132434 -78248087 + L1M4 LINE L1 2922 4013 -2133 1128 185 28 5 chr15 23132439 23132655 -78247866 + AluJo SINE Alu 79 299 -13 3975 222 93 18 chr15 23132661 23132691 -78247830 + L1M4 LINE L1 4023 4049 -2097 2278 120 0 0 chr15 23132691 23132999 -78247522 + AluSq SINE Alu 1 308 -5 3975 222 93 18 chr15 23132999 23133917 -78246604 + L1M4 LINE L1 4049 5076 -1070 2268 116 3 0 chr15 23133917 23134227 -78246294 + AluSp SINE Alu 3 313 0 3975 222 93 18 chr15 23134227 23134435 -78246086 + L1M4 LINE L1 5076 5267 -879 456 324 17 12 chr15 23134623 23134796 -78245725 - LTR10B LTR ERV1 0 505 332 1659 283 39 27 chr15 23135122 23135906 -78244615 - HERVI LTR ERV1 -1788 5836 4091 1194 59 13 0 chr15 23136138 23136290 -78244231 - AluY SINE Alu -4 307 154 23 68 0 0 chr15 23138454 23138498 -78242023 + AT_rich Low_complexity Low_complexity 1 44 0 257 135 19 0 chr15 23138516 23138568 -78241953 + (TA)n Simple_repeat Simple_repeat 2 54 0 341 312 127 12 chr15 23139202 23139375 -78241146 - HAL1 LINE L1 -605 1902 1710 842 168 15 0 chr15 23139406 23139543 -78240978 + MER2 DNA MER2_type 1 139 -206 282 242 45 15 chr15 23139538 23139604 -78240917 + MER2 DNA MER2_type 278 345 0 * 1904 171 68 11 chr15 23139635 23140004 -78240517 + MLT1B LTR MaLR 1 390 0 624 232 45 68 chr15 23141003 23141223 -78239298 + MER87 LTR ERV1 174 388 -153 2372 66 13 0 chr15 23141226 23141527 -78238994 - AluY SINE Alu -6 305 1 1276 162 42 37 chr15 23141528 23141769 -78238752 - MLT1D LTR MaLR -263 242 1 230 51 51 0 chr15 23142778 23142817 -78237704 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 1812 197 70 12 chr15 23142896 23143241 -78237280 + MLT1A1 LTR MaLR 1 365 0 284 309 62 0 chr15 23144890 23144971 -78235550 + MIR3 SINE MIR 108 193 -15 2182 98 18 0 chr15 23146959 23147244 -78233277 + AluSx SINE Alu 1 290 -22 423 250 9 9 chr15 23147281 23147389 -78233132 + MER3 DNA MER1_type 78 185 -24 387 41 0 0 chr15 23148839 23148888 -78231633 + (TC)n Simple_repeat Simple_repeat 2 50 0 297 0 0 0 chr15 23148887 23148920 -78231601 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 2177 152 6 30 chr15 23149717 23150078 -78230443 + THE1A LTR MaLR 4 355 0 468 181 0 0 chr15 23150449 23150521 -78230000 + AluJ/FLAM SINE Alu 2 73 -239 1295 183 65 48 chr15 23151433 23151877 -78228644 + MER89 LTR ERV1 9 559 0 401 304 190 27 chr15 23152879 23153248 -78227273 + MLT1J LTR MaLR 83 511 0 22 56 0 0 chr15 23155555 23155591 -78224930 + AT_rich Low_complexity Low_complexity 1 36 0 1169 136 61 24 chr15 23155750 23155963 -78224558 + MER65A LTR ERV1 1 221 -224 201 267 33 33 chr15 23355963 23356023 -78024498 + MIR3 SINE MIR 97 156 -52 978 115 0 7 chr15 23356150 23356289 -78024232 + AluJo SINE Alu 3 140 -172 247 344 21 0 chr15 23356304 23356400 -78024121 - LTR67 LTR ERVL -29 528 431 1817 182 70 3 chr15 23356414 23356730 -78023791 + L1MB8 LINE L1 5657 6026 -152 180 77 0 0 chr15 23356730 23356756 -78023765 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 1817 182 70 3 chr15 23356756 23356864 -78023657 + L1MB8 LINE L1 6026 6125 -53 308 85 0 41 chr15 23356864 23356924 -78023597 - MADE1 DNA Mariner -41 39 1 909 171 0 11 chr15 23357647 23357823 -78022698 - L1MB3 LINE L1 -1 6182 6009 1567 195 0 3 chr15 23357842 23358144 -78022377 - AluSx SINE Alu -9 303 3 2851 224 31 27 chr15 23358321 23359269 -78021252 + L1P LINE L1 2318 3268 -2878 468 248 29 0 chr15 23360603 23360740 -78019781 - L1M4 LINE L1 -2109 4037 3897 698 183 122 28 chr15 23360741 23360921 -78019600 - MSTA LTR MaLR 0 428 232 393 100 238 0 chr15 23360923 23361003 -78019518 - MSTA LTR MaLR -329 99 1 4048 152 10 23 chr15 23361007 23361697 -78018824 - MSTA-int LTR MaLR -4 1576 896 462 206 319 58 chr15 23361852 23361939 -78018582 - MLT1E1 LTR MaLR -301 353 290 2389 73 3 22 chr15 23361939 23362256 -78018265 - AluY SINE Alu 0 311 1 462 206 319 58 chr15 23362256 23362444 -78018077 - MLT1E1 LTR MaLR -364 290 6 348 158 0 0 chr15 23362447 23362504 -78018017 + MER69 DNA AcHobo 2467 2523 -3 2094 116 0 23 chr15 23362704 23363007 -78017514 - AluSq SINE Alu -17 296 1 1511 194 38 3 chr15 23363010 23363303 -78017218 - AluJo SINE Alu -8 304 2 631 201 26 53 chr15 23363306 23363495 -78017026 + MER39 LTR ERV1 433 616 -91 258 105 0 0 chr15 23363497 23363535 -78016986 + (TCTCC)n Simple_repeat Simple_repeat 5 42 0 2136 110 0 7 chr15 23363535 23363817 -78016704 - AluSx SINE Alu -32 280 1 1127 266 31 40 chr15 23364447 23364872 -78015649 - MER90 LTR ERV1 -4 610 190 1949 116 3 20 chr15 23364874 23365177 -78015344 - AluY SINE Alu -11 300 3 354 154 15 0 chr15 23365277 23365342 -78015179 - AluS SINE Alu -236 67 2 339 167 167 0 chr15 23365343 23365415 -78015106 + Tigger5 DNA MER2_type 2240 2323 0 1754 128 39 0 chr15 23366218 23366499 -78014022 - AluY SINE Alu -9 302 11 1332 181 17 0 chr15 23366631 23366863 -78013658 + HERVL18 LTR ERVL 5812 6047 0 2065 153 35 75 chr15 23366928 23367300 -78013221 + LTR18A LTR ERVL 1 357 0 2161 93 0 64 chr15 23367316 23367628 -78012893 + AluSc SINE Alu 1 292 -17 354 267 193 0 chr15 23367797 23367932 -78012589 + MIR SINE MIR 49 209 -53 844 320 31 9 chr15 23367961 23368283 -78012238 + LTR16A LTR ERVL 18 346 -104 805 289 32 66 chr15 23368290 23368441 -78012080 + HERV16 LTR ERVL 2 157 -4839 2181 121 0 10 chr15 23368441 23368746 -78011775 + AluSx SINE Alu 1 302 -10 805 289 32 66 chr15 23368746 23368974 -78011547 + HERV16 LTR ERVL 157 368 -4628 1124 262 23 35 chr15 23369087 23369519 -78011002 + MER90 LTR ERV1 181 607 -7 1129 225 172 9 chr15 23370331 23370656 -78009865 - MER21B LTR ERV1 -459 404 27 443 205 13 0 chr15 23370694 23370772 -78009749 - MER21B LTR ERV1 -773 90 12 392 177 38 0 chr15 23371727 23371806 -78008715 + MER119 DNA MER1_type 501 582 -1 483 230 111 15 chr15 23371911 23372046 -78008475 - MER58A DNA MER1_type 0 148 1 305 287 41 33 chr15 23372641 23372763 -78007758 - MIR SINE MIR -70 192 70 34 93 0 0 chr15 23373017 23373114 -78007407 + AT_rich Low_complexity Low_complexity 1 97 0 1831 159 3 7 chr15 23373131 23373440 -78007081 - AluSg SINE Alu -2 308 1 1542 165 60 7 chr15 23373445 23373730 -78006791 - AluSx SINE Alu -12 300 1 192 40 0 0 chr15 23374221 23374246 -78006275 + (TG)n Simple_repeat Simple_repeat 2 26 0 1205 207 28 21 chr15 23374252 23374537 -78005984 - AluJo SINE Alu -21 291 5 201 39 0 0 chr15 23374675 23374701 -78005820 + (CA)n Simple_repeat Simple_repeat 2 27 0 1010 278 7 7 chr15 23375365 23375660 -78004861 - AluSq SINE Alu -8 295 1 11648 91 2 3 chr15 23376751 23378404 -78002117 - L1P LINE L1 -1673 4473 2822 1337 139 30 30 chr15 23379850 23380080 -78000441 + MER30 DNA MER1_type 1 230 0 460 282 42 0 chr15 23380171 23380313 -78000208 - L1MD3 LINE L1 -10 7985 7838 579 217 23 8 chr15 23380323 23380452 -78000069 + U8 snRNA snRNA 4 134 -2 311 139 82 180 chr15 23380497 23380676 -77999845 - L1MC3 LINE L1 -175 7820 7444 1770 143 0 0 chr15 23380704 23380969 -77999552 - AluSg SINE Alu -45 265 1 421 234 9 9 chr15 23381008 23381115 -77999406 - L1MD3 LINE L1 -325 7670 7564 457 303 16 20 chr15 23381498 23381742 -77998779 + L1MB7 LINE L1 5891 6133 -51 660 249 24 6 chr15 23382255 23382420 -77998101 + AluJb SINE Alu 115 282 -30 288 111 0 0 chr15 23382420 23382465 -77998056 + (TA)n Simple_repeat Simple_repeat 2 46 0 1252 253 28 22 chr15 23382466 23382830 -77997691 + L1MB2 LINE L1 5777 6142 -29 609 320 18 4 chr15 23383402 23383630 -77996891 - MLT1D LTR MaLR 0 505 275 357 193 68 0 chr15 23384859 23384947 -77995574 + MSTC LTR MaLR 1 94 -334 228 281 12 49 chr15 23385097 23385179 -77995342 - L2 LINE L2 -3 3269 3191 5719 70 1 4 chr15 23385862 23386581 -77993940 + L1PA3 LINE L1 5439 6155 0 1491 232 41 13 chr15 23386657 23387122 -77993399 - L1MDb LINE L1 -5264 1145 668 385 279 88 59 chr15 23387154 23387358 -77993163 - L1MDb LINE L1 -5934 475 266 395 217 153 21 chr15 23387368 23387557 -77992964 - L1MDb LINE L1 -6187 222 9 211 312 18 37 chr15 23387835 23387944 -77992577 + MER5C DNA MER1_type 18 124 -200 1404 145 188 59 chr15 23388409 23388653 -77991868 + MER47A DNA MER2_type 1 212 -2111 207 0 0 0 chr15 23388653 23388676 -77991845 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2086 112 3 7 chr15 23388682 23388968 -77991553 - AluSp SINE Alu -28 285 1 1404 145 188 59 chr15 23388968 23389040 -77991481 + MER47A DNA MER2_type 216 366 0 2245 73 38 0 chr15 23389840 23390129 -77990392 - AluY SINE Alu -7 304 5 369 109 0 0 chr15 23390133 23390188 -77990333 + (T)n Simple_repeat Simple_repeat 1 55 0 21 89 0 0 chr15 23390714 23390770 -77989751 + AT_rich Low_complexity Low_complexity 1 56 0 28 0 0 0 chr15 23391047 23391075 -77989446 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr15 23391332 23391377 -77989144 + AT_rich Low_complexity Low_complexity 1 45 0 190 243 108 40 chr15 23392478 23392552 -77987969 + MIR SINE MIR 184 262 0 2091 136 31 31 chr15 23392632 23392992 -77987529 + MLT1A1 LTR MaLR 6 365 0 3541 171 89 0 chr15 23393032 23393716 -77986805 + L1MB7 LINE L1 5377 6121 -63 233 250 140 0 chr15 23394595 23394695 -77985826 - L1M4 LINE L1 -1901 4245 4132 282 260 90 0 chr15 23394828 23394928 -77985593 - L1M4 LINE L1 -2231 3915 3807 3869 197 61 11 chr15 23394960 23395518 -77985003 - L1MB7 LINE L1 -19 6165 5636 2085 108 0 0 chr15 23395518 23395797 -77984724 - AluSx SINE Alu 0 312 34 3869 197 61 11 chr15 23395797 23396602 -77983919 - L1MB7 LINE L1 -548 5636 4735 294 213 27 0 chr15 23396640 23396715 -77983806 - MLT1J1 LTR MaLR 0 505 429 213 309 32 24 chr15 23396982 23397105 -77983416 + L2 LINE L2 2200 2323 -991 1202 245 128 22 chr15 23397167 23397580 -77982941 + MLT1E2 LTR MaLR 1 457 -169 2352 60 0 13 chr15 23397593 23397895 -77982626 + AluY SINE Alu 1 298 -13 183 369 18 18 chr15 23397991 23398102 -77982419 + L2 LINE L2 2952 3062 -251 948 92 23 8 chr15 23398545 23398675 -77981846 + AluSc SINE Alu 1 132 -177 1852 116 25 63 chr15 23398929 23399248 -77981273 + AluY SINE Alu 1 307 -4 320 265 131 29 chr15 23400147 23400392 -77980129 + L1MEd LINE L1 970 1239 -4880 46 46 0 46 chr15 23400503 23400611 -77979910 + AT_rich Low_complexity Low_complexity 1 103 0 320 268 76 82 chr15 23400875 23401203 -77979318 + L1M4 LINE L1 3630 3955 -2191 340 252 69 23 chr15 23401769 23401900 -77978621 - MLT1J1 LTR MaLR -167 279 143 1050 262 78 31 chr15 23401949 23402373 -77978148 - MLT1J1 LTR MaLR -2 444 1 7608 36 0 3 chr15 23402535 23403742 -77976779 + L1PA4 LINE L1 4951 6154 -1 523 222 62 11 chr15 23403833 23404023 -77976498 - MSTD LTR MaLR 0 396 178 2071 138 76 15 chr15 23404058 23404399 -77976122 - THE1B LTR MaLR -2 362 1 351 193 68 0 chr15 23404977 23405065 -77975456 + MSTC LTR MaLR 1 94 -334 2439 76 0 7 chr15 23406377 23406681 -77973840 + AluY SINE Alu 1 302 -9 2414 74 0 3 chr15 23406692 23406990 -77973531 + AluY SINE Alu 1 297 -14 522 249 103 56 chr15 23406991 23407224 -77973297 - L1MC4a LINE L1 -1520 6288 6045 441 268 89 89 chr15 23407269 23407377 -77973144 - MIR SINE MIR -14 248 141 1759 113 0 0 chr15 23407377 23407608 -77972913 - AluSx SINE Alu -24 288 58 441 268 89 89 chr15 23407608 23407723 -77972798 - MIR SINE MIR -120 142 25 1978 121 7 0 chr15 23408481 23408753 -77971768 + AluSq SINE Alu 35 308 -5 251 250 31 0 chr15 23408907 23408971 -77971550 - MLT1K LTR MaLR -39 549 484 223 341 8 76 chr15 23409207 23409339 -77971182 + MIR SINE MIR 24 146 -62 459 0 0 0 chr15 23409343 23409394 -77971127 + (TA)n Simple_repeat Simple_repeat 2 52 0 2456 90 0 0 chr15 23409394 23409705 -77970816 - AluY SINE Alu 0 311 1 454 194 21 0 chr15 23410303 23410396 -77970125 - MER103 DNA DNA -21 145 51 280 261 23 23 chr15 23410463 23410551 -77969970 + MER5C DNA MER1_type 37 124 -200 668 160 10 0 chr15 23411013 23411113 -77969408 + Tigger5 DNA MER2_type 1 101 -2222 413 104 78 13 chr15 23411104 23411181 -77969340 + Tigger5 DNA MER2_type 2088 2169 -154 * 905 126 0 4 chr15 23411287 23411521 -77969000 + (GA)n Simple_repeat Simple_repeat 1 232 0 1121 220 22 0 chr15 23411521 23411748 -77968773 - MSTB LTR MaLR -194 232 1 1757 170 22 41 chr15 23411856 23412221 -77968300 + L1MB3 LINE L1 5798 6155 -28 21 57 0 0 chr15 23412229 23412264 -77968257 + AT_rich Low_complexity Low_complexity 1 35 0 718 326 110 12 chr15 23412731 23413302 -77967219 + L1MC4a LINE L1 5256 5882 -1926 313 264 8 72 chr15 23413480 23413605 -77966916 - MLT1H LTR MaLR -238 311 195 782 334 46 13 chr15 23415264 23415673 -77964848 + ERVL LTR ERVL 2644 3111 -2638 2157 114 0 0 chr15 23415702 23416030 -77964491 + AluSg SINE Alu 1 328 0 1206 280 118 30 chr15 23416045 23416914 -77963607 + ERVL LTR ERVL 3229 4216 -1548 479 351 101 4 chr15 23417086 23417334 -77963187 + ERVL LTR ERVL 4769 5040 -724 1682 225 46 38 chr15 23417465 23417638 -77962883 + MLT1C LTR MaLR 3 173 -294 2440 71 7 0 chr15 23417638 23417935 -77962586 + AluY SINE Alu 1 299 -12 1682 225 46 38 chr15 23417935 23418214 -77962307 + MLT1C LTR MaLR 173 459 -8 413 266 0 9 chr15 23418218 23418327 -77962194 + ERVL LTR ERVL 5172 5279 -485 895 228 22 22 chr15 23418449 23418471 -77962050 + MER49 LTR ERV1 1 22 -901 1858 136 0 74 chr15 23418471 23418794 -77961727 + AluSx SINE Alu 1 299 -13 895 228 22 22 chr15 23418794 23418995 -77961526 + MER49 LTR ERV1 21 224 -699 357 82 0 0 chr15 23422300 23422349 -77958172 + (TG)n Simple_repeat Simple_repeat 1 49 0 6429 13 1 0 chr15 23422681 23423394 -77957127 + L1PA3 LINE L1 5442 6155 0 244 233 29 24 chr15 23425079 23425163 -77955358 - MIR SINE MIR -55 153 69 1642 167 7 24 chr15 23425215 23425509 -77955012 - AluJo SINE Alu -23 289 1 2135 188 28 2 chr15 23426341 23426777 -77953744 - L1 LINE L1 -2369 3777 3331 2180 84 7 7 chr15 23426780 23427077 -77953444 - AluY SINE Alu -10 301 5 369 43 0 0 chr15 23427088 23427135 -77953386 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 56 0 0 chr15 23427232 23427268 -77953253 + GC_rich Low_complexity Low_complexity 1 36 0 1951 100 14 4 chr15 23428144 23428424 -77952097 + AluSq SINE Alu 1 283 -30 312 322 0 0 chr15 23428542 23428632 -77951889 + L1MC4 LINE L1 6614 6703 -1339 * 320 253 72 0 chr15 23428570 23428653 -77951868 - L1MC4 LINE L1 -1339 6703 6615 2353 98 0 19 chr15 23428705 23429022 -77951499 + AluSp SINE Alu 1 311 -2 2233 111 16 10 chr15 23429513 23429820 -77950701 + AluSx SINE Alu 1 309 -3 21 36 0 0 chr15 23429912 23429940 -77950581 + AT_rich Low_complexity Low_complexity 1 28 0 679 189 8 8 chr15 23429955 23430077 -77950444 + FLAM_C SINE Alu 6 127 -16 24 0 0 0 chr15 23430169 23430193 -77950328 + AT_rich Low_complexity Low_complexity 1 24 0 355 224 126 75 chr15 23430519 23430637 -77949884 + L1ME4a LINE L1 5743 5874 -247 2356 84 3 0 chr15 23430637 23430933 -77949588 + AluSp SINE Alu 1 297 -16 355 224 126 75 chr15 23430933 23430988 -77949533 + L1ME4a LINE L1 5874 5925 -196 2263 103 0 0 chr15 23431106 23431407 -77949114 + AluY SINE Alu 1 301 -10 21 0 0 0 chr15 23431639 23431660 -77948861 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr15 23431962 23432001 -77948520 + AT_rich Low_complexity Low_complexity 1 39 0 2584 68 0 0 chr15 23435091 23435401 -77945120 - AluY SINE Alu -1 310 1 272 238 62 0 chr15 23435550 23435630 -77944891 + L1ME3 LINE L1 5550 5634 -536 641 256 84 9 chr15 23435633 23435848 -77944673 + L1ME3 LINE L1 5733 5963 -199 215 175 194 48 chr15 23437039 23437142 -77943379 + MIR SINE MIR 86 203 -59 1807 148 4 0 chr15 23437197 23437475 -77943046 + AluSx SINE Alu 1 279 -33 186 43 0 0 chr15 23437480 23437503 -77943018 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2530 51 0 22 chr15 23437856 23438167 -77942354 - AluY SINE Alu -6 305 2 185 81 0 54 chr15 23439438 23439475 -77941046 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 894 241 96 35 chr15 23439736 23440131 -77940390 + LTR37A LTR ERV1 8 426 0 2170 92 0 60 chr15 23441161 23441478 -77939043 - AluY SINE Alu -13 298 1 312 226 60 45 chr15 23442192 23442325 -77938196 - HAL1b LINE L1 -22 1326 1192 736 156 43 0 chr15 23442334 23442512 -77938009 + AluYa5 SINE Alu 136 319 0 29 28 0 0 chr15 23442524 23442560 -77937961 + AT_rich Low_complexity Low_complexity 1 36 0 2149 94 3 7 chr15 23442810 23443119 -77937402 - AluY SINE Alu -3 308 1 865 195 48 68 chr15 23443290 23443541 -77936980 - MLT1A1 LTR MaLR 0 365 120 1415 229 31 14 chr15 23443803 23444161 -77936360 - MLT1A1 LTR MaLR 0 365 2 1306 107 0 19 chr15 23444184 23444389 -77936132 - AluY SINE Alu 0 311 111 237 270 0 0 chr15 23444614 23444626 -77935895 + L2 LINE L2 3251 3262 -51 2307 76 3 7 chr15 23444626 23444927 -77935594 + AluY SINE Alu 1 300 -11 237 270 0 0 chr15 23444927 23444977 -77935544 + L2 LINE L2 3261 3313 0 721 274 45 116 chr15 23445957 23446355 -77934166 + LTR16A LTR ERVL 68 437 -13 773 147 0 23 chr15 23446569 23446698 -77933823 + FLAM_C SINE Alu 1 126 -7 2272 118 0 0 chr15 23447678 23447983 -77932538 + AluSx SINE Alu 1 305 -7 184 313 24 12 chr15 23448182 23448265 -77932256 - L2 LINE L2 -2520 794 711 3652 119 2 4 chr15 23448659 23449165 -77931356 + MER1A DNA MER1_type 25 529 0 1727 199 48 22 chr15 23449459 23449815 -77930706 + MLT1A1 LTR MaLR 1 365 0 405 279 93 11 chr15 23449912 23450095 -77930426 - MIR SINE MIR -30 232 35 2275 112 21 3 chr15 23450369 23450708 -77929813 - L1PA10 LINE L1 -15 6153 5809 872 98 8 0 chr15 23450808 23450931 -77929590 - L1PA10 LINE L1 -357 5811 5688 1192 101 0 0 chr15 23450931 23451100 -77929421 + L1PA10 LINE L1 5518 5686 -482 2420 80 0 0 chr15 23452550 23452849 -77927672 - AluY SINE Alu -12 299 1 242 314 128 0 chr15 23453379 23453481 -77927040 - MIR SINE MIR 0 262 148 257 208 21 0 chr15 23453855 23453951 -77926570 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 4885 125 23 19 chr15 23454558 23455334 -77925187 - MER4E LTR ERV1 0 779 1 25 0 0 0 chr15 23455574 23455599 -77924922 + AT_rich Low_complexity Low_complexity 1 25 0 2457 84 0 3 chr15 23455625 23455936 -77924585 + AluY SINE Alu 1 310 -1 22 35 0 0 chr15 23456285 23456314 -77924207 + AT_rich Low_complexity Low_complexity 1 29 0 1673 93 20 16 chr15 23458001 23458248 -77922273 - THE1C LTR MaLR -127 248 1 1723 144 60 7 chr15 23459120 23459405 -77921116 + AluSx SINE Alu 1 300 -12 2148 130 3 0 chr15 23459410 23459717 -77920804 + AluSg SINE Alu 1 308 -2 48 72 0 0 chr15 23459734 23459831 -77920690 + AT_rich Low_complexity Low_complexity 1 97 0 1930 101 31 11 chr15 23460084 23460370 -77920151 - AluY SINE Alu -14 297 6 24 67 0 0 chr15 23460802 23460847 -77919674 + AT_rich Low_complexity Low_complexity 1 45 0 1399 160 12 78 chr15 23462286 23462500 -77918021 - AluJo SINE Alu -2 310 124 1864 114 28 41 chr15 23462500 23462790 -77917731 + AluSp SINE Alu 2 287 -26 1399 160 12 78 chr15 23462790 23462907 -77917614 - AluJo SINE Alu -188 124 1 1760 135 14 17 chr15 23462941 23463238 -77917283 + AluSp SINE Alu 5 300 -13 550 196 9 0 chr15 23463238 23463350 -77917171 - AluJb SINE Alu -198 114 2 1679 145 23 16 chr15 23463385 23463688 -77916833 + AluSp SINE Alu 5 309 -4 284 136 0 0 chr15 23463688 23463732 -77916789 - AluJb SINE Alu -188 114 71 * 1510 226 91 39 chr15 23463723 23464162 -77916359 + MLT1D LTR MaLR 44 505 0 1767 194 28 33 chr15 23464701 23465097 -77915424 - L1MB2 LINE L1 0 6171 5778 381 43 0 0 chr15 23465097 23465144 -77915377 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 899 168 14 0 chr15 23465144 23465287 -77915234 - AluJb SINE Alu -30 282 138 1636 156 19 16 chr15 23465770 23466078 -77914443 - L1MB7 LINE L1 0 6184 5876 26 30 0 0 chr15 23469108 23469141 -77911380 + AT_rich Low_complexity Low_complexity 1 33 0 518 204 138 13 chr15 23469184 23469336 -77911185 - MIR SINE MIR -64 198 28 2038 109 13 33 chr15 23469489 23469792 -77910729 - AluSx SINE Alu -13 299 3 327 49 0 0 chr15 23470956 23470997 -77909524 + (TG)n Simple_repeat Simple_repeat 2 42 0 251 204 0 0 chr15 23471009 23471058 -77909463 + MIR SINE MIR 184 232 -30 933 249 127 33 chr15 23471088 23471602 -77908919 - HAL1 LINE L1 -877 1630 1069 592 236 126 95 chr15 23471603 23472078 -77908443 - MLT1H1 LTR MaLR 0 555 66 254 234 127 25 chr15 23472145 23472342 -77908179 - HAL1 LINE L1 -1437 1070 854 2324 109 3 0 chr15 23472369 23472672 -77907849 - AluSp SINE Alu -9 304 1 1876 138 10 31 chr15 23472736 23473064 -77907457 + AluJo SINE Alu 1 322 0 346 286 93 65 chr15 23473337 23473627 -77906894 - HAL1 LINE L1 -2167 340 43 902 217 37 28 chr15 23474010 23474227 -77906294 + MER20 DNA MER1_type 1 219 0 2483 63 0 13 chr15 23474357 23474656 -77905865 + AluY SINE Alu 5 299 -12 270 0 0 0 chr15 23475094 23475124 -77905397 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2129 118 7 0 chr15 23475124 23475403 -77905118 - AluY SINE Alu -27 284 1 334 251 99 41 chr15 23478059 23478082 -77902439 + MIR SINE MIR 12 32 -230 2236 99 7 3 chr15 23478082 23478375 -77902146 + AluY SINE Alu 1 294 -17 334 251 99 41 chr15 23478375 23478522 -77901999 + MIR SINE MIR 32 192 -70 225 364 0 0 chr15 23479453 23479552 -77900969 + MIR SINE MIR 31 129 -79 268 275 73 18 chr15 23479616 23479725 -77900796 + L2 LINE L2 3194 3308 -5 225 364 0 0 chr15 23480432 23480531 -77899990 + MIR SINE MIR 31 129 -79 284 241 78 26 chr15 23480588 23480704 -77899817 + L2 LINE L2 3146 3267 -5 233 173 58 0 chr15 23482040 23482092 -77898429 + L1MC4a LINE L1 5885 5939 -1869 282 56 0 0 chr15 23482095 23482131 -77898390 + (TG)n Simple_repeat Simple_repeat 2 37 0 424 217 104 47 chr15 23482317 23482487 -77898034 + MIR SINE MIR 16 192 -58 1926 145 0 26 chr15 23484609 23484912 -77895609 + AluSx SINE Alu 3 297 -15 225 250 102 0 chr15 23484963 23485051 -77895470 + MIR SINE MIR 96 192 -70 917 175 0 18 chr15 23485757 23485923 -77894598 + 7SLRNA srpRNA srpRNA 95 257 -63 228 86 0 0 chr15 23487048 23487083 -77893438 + (TGGGGG)n Simple_repeat Simple_repeat 6 40 0 1953 89 0 98 chr15 23489282 23489607 -77890914 - AluSg SINE Alu -17 293 1 2300 74 0 3 chr15 23489788 23490109 -77890412 - AluY SINE Alu 0 320 1 1350 122 5 0 chr15 23490109 23490298 -77890223 + Charlie3 DNA MER1_type 2517 2706 -4 1304 146 5 0 chr15 23490300 23490520 -77890001 - L1MB3 LINE L1 -259 5924 5704 2067 130 0 3 chr15 23490595 23490880 -77889641 - AluSx SINE Alu -28 284 1 3666 197 46 20 chr15 23490880 23491839 -77888682 - L1MB3 LINE L1 -724 5460 4475 2425 86 0 0 chr15 23492090 23492393 -77888128 + AluY SINE Alu 1 303 -8 1680 155 17 24 chr15 23492530 23492820 -77887701 - AluJb SINE Alu -17 295 8 405 113 141 0 chr15 23492967 23493038 -77887483 - AluJ/FRAM SINE Alu -16 296 216 2039 85 0 0 chr15 23493303 23493550 -77886971 - AluSg SINE Alu -63 247 1 928 103 0 0 chr15 23494063 23494179 -77886342 + AluSq/x SINE Alu 1 116 -197 908 119 0 0 chr15 23494179 23494305 -77886216 + AluSc SINE Alu 166 291 -18 1165 155 5 0 chr15 23494305 23494492 -77886029 + AluSx SINE Alu 119 306 -4 252 299 41 0 chr15 23494590 23494687 -77885834 + MIR SINE MIR 92 192 -70 2457 86 0 13 chr15 23495663 23495978 -77884543 - AluY SINE Alu 0 311 1 1626 71 40 22 chr15 23496263 23496489 -77884032 + MER30 DNA MER1_type 1 230 0 972 155 42 237 chr15 23496580 23496730 -77883791 - L1MD3 LINE L1 -10 7985 7808 622 204 15 8 chr15 23496730 23496862 -77883659 + U8 snRNA snRNA 4 136 0 972 155 42 237 chr15 23496862 23497086 -77883435 - L1MD3 LINE L1 -187 7808 7542 195 42 0 0 chr15 23497086 23497110 -77883411 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2003 110 0 0 chr15 23497111 23497374 -77883147 - AluSg SINE Alu -47 263 1 972 155 42 237 chr15 23497374 23497520 -77883001 - L1MD3 LINE L1 -258 7737 7564 328 279 38 51 chr15 23497992 23498150 -77882371 + L2 LINE L2 3158 3313 0 23 33 0 0 chr15 23498243 23498273 -77882248 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr15 23499037 23499065 -77881456 + AT_rich Low_complexity Low_complexity 1 28 0 2095 119 3 0 chr15 23500446 23500740 -77879781 + AluSq SINE Alu 19 313 0 24 67 0 0 chr15 23501371 23501416 -77879105 + AT_rich Low_complexity Low_complexity 1 45 0 827 150 0 15 chr15 23501721 23501854 -77878667 - FLAM_C SINE Alu -1 132 2 299 270 134 41 chr15 23502175 23502388 -77878133 + MIR SINE MIR 3 225 -37 1857 79 126 14 chr15 23502388 23502666 -77877855 - AluY SINE Alu -2 309 1 406 306 32 24 chr15 23503628 23503876 -77876645 - L1ME LINE L1 -400 5721 5472 241 173 0 0 chr15 23503959 23504011 -77876510 - L1MB3 LINE L1 -14 6169 6118 1770 95 0 9 chr15 23504011 23504242 -77876279 + AluY SINE Alu 68 296 -15 338 128 56 17 chr15 23505579 23505817 -77874704 + (CA)n Simple_repeat Simple_repeat 1 247 0 220 150 68 15 chr15 23505843 23506111 -77874410 + (CA)n Simple_repeat Simple_repeat 1 282 0 267 119 68 8 chr15 23506125 23506243 -77874278 + (CA)n Simple_repeat Simple_repeat 2 126 0 964 217 83 24 chr15 23507049 23507302 -77873219 - L1MB8 LINE L1 0 6178 5911 243 0 0 0 chr15 23507814 23507841 -77872680 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1497 182 28 21 chr15 23507845 23508136 -77872385 - AluJo SINE Alu -19 293 1 201 39 0 0 chr15 23508270 23508296 -77872225 + (CA)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr15 23509218 23509240 -77871281 + AT_rich Low_complexity Low_complexity 1 22 0 329 256 99 16 chr15 23510170 23510291 -77870230 - MIR3 SINE MIR -40 168 38 1848 162 12 84 chr15 23511735 23512149 -77868372 - MLT1B LTR MaLR -4 386 3 924 199 49 29 chr15 23512502 23512748 -77867773 - MLT1A1 LTR MaLR -16 349 99 3121 213 81 39 chr15 23512789 23513556 -77866965 - MER21B LTR ERV1 -53 810 12 413 179 11 42 chr15 23513564 23513659 -77866862 - MLT1A1 LTR MaLR -269 105 14 2254 109 0 13 chr15 23514517 23514819 -77865702 - AluSg SINE Alu -12 298 1 1096 151 0 12 chr15 23515839 23516011 -77864510 + FRAM SINE Alu 1 40 0 870 205 0 18 chr15 23516596 23516767 -77863754 + FRAM SINE Alu 1 40 0 289 309 0 0 chr15 23517983 23518067 -77862454 + MIR3 SINE MIR 73 156 -52 480 230 111 15 chr15 23518693 23518828 -77861693 + MER58A DNA MER1_type 1 148 0 868 263 55 15 chr15 23518932 23519395 -77861126 - MER119 DNA MER1_type -1 582 5 183 146 122 0 chr15 23519420 23519461 -77861060 - MIR SINE MIR -69 139 94 204 40 0 0 chr15 23520790 23520815 -77859706 + (TTTTTA)n Simple_repeat Simple_repeat 6 30 0 1532 88 0 16 chr15 23521609 23521803 -77858718 - AluY SINE Alu -47 264 74 209 114 29 0 chr15 23522073 23522108 -77858413 + (TG)n Simple_repeat Simple_repeat 1 36 0 925 301 68 35 chr15 23522659 23523250 -77857271 - L1MC4a LINE L1 -1915 5893 5284 332 332 93 18 chr15 23523843 23524069 -77856452 - L1MC4a LINE L1 -1604 4542 4300 280 317 106 22 chr15 23524112 23524472 -77856049 - L1MC4a LINE L1 -1949 4197 3808 22 0 0 0 chr15 23524769 23524791 -77855730 + AT_rich Low_complexity Low_complexity 1 22 0 1383 171 95 29 chr15 23525854 23526046 -77854475 - L1MB3 LINE L1 -1 6182 5959 2163 131 0 3 chr15 23526046 23526352 -77854169 - AluSx SINE Alu -7 305 1 1383 171 95 29 chr15 23526352 23526475 -77854046 - L1MB3 LINE L1 -224 5959 5846 2126 99 16 59 chr15 23526479 23526802 -77853719 - AluSx SINE Alu -3 309 1 346 333 45 31 chr15 23526816 23527036 -77853485 - L1MC4a LINE L1 -3044 3102 2874 632 125 0 29 chr15 23527036 23527140 -77853381 - HY3 scRNA scRNA 0 101 1 346 333 45 31 chr15 23527140 23527276 -77853245 - L1MC4a LINE L1 -3272 2874 2741 2339 223 149 19 chr15 23527546 23528257 -77852264 - MER21B LTR ERV1 -31 832 40 437 205 13 0 chr15 23528296 23528374 -77852147 - MER21B LTR ERV1 -773 90 12 2283 99 0 0 chr15 23530765 23531058 -77849463 - AluSx SINE Alu -13 299 7 1770 168 36 0 chr15 23531063 23531372 -77849149 + MER44D DNA MER2_type 18 607 -2 2071 156 33 0 chr15 23532184 23532550 -77847971 + MLT1B LTR MaLR 2 379 -11 208 270 101 11 chr15 23532751 23532840 -77847681 - MIR SINE MIR -72 136 40 1140 121 0 0 chr15 23533056 23533213 -77847308 - AluSp SINE Alu -17 296 140 3699 135 7 35 chr15 23533437 23534045 -77846476 + MER49 LTR ERV1 333 923 0 576 191 18 12 chr15 23535005 23535173 -77845348 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 2292 115 3 0 chr15 23536476 23536781 -77843740 - AluSq SINE Alu -5 308 3 2283 104 0 7 chr15 23536792 23537100 -77843421 - AluY SINE Alu -5 306 1 21946 196 46 5 chr15 23538397 23542565 -77837956 - ERVL LTR ERVL -788 4976 550 3187 252 53 26 chr15 23542703 23543946 -77836575 + L1M4 LINE L1 2626 3902 -2244 1866 137 181 8 chr15 23543946 23544311 -77836210 + MSTA LTR MaLR 1 428 0 10079 122 12 40 chr15 23544313 23545935 -77834586 + MSTA-int LTR MaLR 3 1580 0 409 113 238 0 chr15 23545935 23546015 -77834506 + MSTA LTR MaLR 1 99 -329 988 145 134 0 chr15 23546017 23546196 -77834325 + MSTA LTR MaLR 226 428 0 1284 253 6 10 chr15 23546196 23546508 -77834013 + L1M4 LINE L1 3898 4208 -1938 1317 253 118 36 chr15 23546511 23546629 -77833892 - MLT1D LTR MaLR 0 505 398 2214 151 28 13 chr15 23546629 23547019 -77833502 + MSTD LTR MaLR 1 396 0 1317 253 118 36 chr15 23547019 23547367 -77833154 - MLT1D LTR MaLR -107 398 1 429 320 30 13 chr15 23547371 23547671 -77832850 + L1M4 LINE L1 4211 4515 -1631 414 352 23 23 chr15 23547686 23547942 -77832579 + L1M4 LINE L1 106 361 -5594 1418 203 16 3 chr15 23548043 23548408 -77832113 + L1M4 LINE L1 3068 3437 -2597 636 266 18 9 chr15 23548528 23548757 -77831764 + L1M4 LINE L1 4173 4403 -1631 1047 322 93 23 chr15 23548772 23549464 -77831057 + L1M3a LINE L1 106 770 -5185 431 245 71 71 chr15 23549529 23549684 -77830837 + L1M3a LINE L1 635 789 -5166 2227 268 22 3 chr15 23549685 23550402 -77830119 + L1M3a LINE L1 2544 3274 -2760 1285 175 29 0 chr15 23550503 23550749 -77829772 + MLT1B LTR MaLR 127 379 -11 208 270 101 11 chr15 23550951 23551040 -77829481 - MIR SINE MIR -72 136 40 1140 121 0 0 chr15 23551256 23551413 -77829108 - AluSp SINE Alu -17 296 140 2234 117 0 0 chr15 23552145 23552445 -77828076 + AluSx SINE Alu 1 300 -12 45156 33 4 5 chr15 23553418 23559579 -77820942 + L1PA3 LINE L1 7 6155 0 1578 226 41 13 chr15 23559654 23560119 -77820402 - L1MDb LINE L1 -5264 1145 668 615 266 171 12 chr15 23560151 23560554 -77819967 - L1MDb LINE L1 -5934 475 9 2016 204 31 47 chr15 23561042 23561191 -77819330 + MER90 LTR ERV1 6 156 -458 2531 72 0 3 chr15 23561191 23561495 -77819026 + AluY SINE Alu 1 303 -8 2016 204 31 47 chr15 23561495 23561918 -77818603 + MER90 LTR ERV1 156 610 -4 2049 112 49 3 chr15 23562682 23562968 -77817553 - AluSx SINE Alu -13 299 1 235 145 72 58 chr15 23563310 23563379 -77817142 + MER53 DNA DNA 119 188 -1 1639 213 81 29 chr15 23564656 23565136 -77815385 - MLT1D LTR MaLR 0 505 1 333 229 35 83 chr15 23565800 23565914 -77814607 - MER5A DNA MER1_type -6 183 75 1790 139 40 7 chr15 23565914 23566230 -77814291 - AluY SINE Alu 0 326 2 333 229 35 83 chr15 23566230 23566258 -77814263 - MER5A DNA MER1_type -114 75 47 1751 118 129 26 chr15 23566301 23566641 -77813880 - THE1C LTR MaLR 0 375 1 1795 117 25 71 chr15 23568402 23568728 -77811793 + AluY SINE Alu 1 311 0 2109 104 3 32 chr15 23771421 23771729 -77608792 + AluSq SINE Alu 1 299 -14 257 331 40 24 chr15 23771739 23771863 -77608658 - L1M4 LINE L1 -970 5176 5051 1034 230 72 23 chr15 23772080 23772608 -77607913 + MLT1E LTR MaLR 1 593 0 258 231 68 26 chr15 23772636 23772753 -77607768 - L1M4 LINE L1 -1434 4712 4591 404 332 135 9 chr15 23773008 23773237 -77607284 - HAL1b LINE L1 -994 354 97 2431 66 0 10 chr15 23773344 23773648 -77606873 - AluY SINE Alu -10 301 1 906 300 142 51 chr15 23774078 23775217 -77605304 + L2 LINE L2 2071 3307 -6 917 242 106 124 chr15 23776511 23777354 -77603167 + L1MCb LINE L1 570 1400 -4851 2068 115 3 60 chr15 23777679 23777993 -77602528 + AluSp SINE Alu 1 296 -17 21 0 0 0 chr15 23778025 23778046 -77602475 + AT_rich Low_complexity Low_complexity 1 21 0 229 303 86 63 chr15 23778145 23778366 -77602155 - L2 LINE L2 -198 3074 2849 199 280 192 0 chr15 23778607 23778732 -77601789 - L2 LINE L2 -832 2482 2334 25 0 0 0 chr15 23779116 23779141 -77601380 + AT_rich Low_complexity Low_complexity 1 25 0 1147 286 89 42 chr15 23781082 23782082 -77598439 + L1MD2 LINE L1 806 1852 -4544 425 250 74 28 chr15 23782313 23782489 -77598032 + L1MD2 LINE L1 2448 2631 -3584 355 283 101 0 chr15 23782646 23782784 -77597737 + L1MD2 LINE L1 5014 5165 -1050 27 49 0 0 chr15 23782973 23783014 -77597507 + AT_rich Low_complexity Low_complexity 1 41 0 5305 196 95 33 chr15 23783068 23784597 -77595924 + L1MDa LINE L1 1025 2648 -3892 764 207 79 35 chr15 23784616 23784819 -77595702 + L1MD2 LINE L1 5758 5969 -459 236 271 86 14 chr15 23784957 23785027 -77595494 + L1M2a LINE L1 347 421 -6747 680 48 12 5 chr15 23785333 23785426 -77595095 - L1PA8A LINE L1 -257 5874 5792 1073 99 53 0 chr15 23785426 23785576 -77594945 + L1PA10 LINE L1 6009 6168 0 225 343 55 27 chr15 23786366 23786512 -77594009 - L2 LINE L2 0 3272 3123 35 24 0 0 chr15 23788434 23788476 -77592045 + AT_rich Low_complexity Low_complexity 1 42 0 279 220 258 68 chr15 23788702 23788834 -77591687 - MIR SINE MIR -18 244 88 22 0 0 0 chr15 23789495 23789517 -77591004 + AT_rich Low_complexity Low_complexity 1 22 0 216 233 33 17 chr15 23789778 23789838 -77590683 + MIR SINE MIR 82 142 -120 283 224 0 71 chr15 23791790 23791875 -77588646 + L1P5 LINE L1 5365 5443 -708 739 75 0 98 chr15 23791908 23792041 -77588480 + LTR9B LTR ERV1 441 560 -84 201 74 0 0 chr15 23792670 23792697 -77587824 + (CA)n Simple_repeat Simple_repeat 2 28 0 2156 93 0 84 chr15 23793441 23793774 -77586747 - AluSx SINE Alu -7 305 1 22 56 0 0 chr15 23793774 23793810 -77586711 + AT_rich Low_complexity Low_complexity 1 36 0 195 42 0 0 chr15 23796737 23796761 -77583760 + (A)n Simple_repeat Simple_repeat 1 24 0 2318 78 0 14 chr15 23797406 23797754 -77582767 - AluSq SINE Alu 0 313 1 209 105 0 26 chr15 23800608 23800646 -77579875 + (GGGAGA)n Simple_repeat Simple_repeat 6 42 0 2448 78 0 0 chr15 23802179 23802488 -77578033 - AluSg1 SINE Alu 0 309 1 304 374 107 0 chr15 23802866 23803053 -77577468 - MIR SINE MIR -24 238 32 2618 61 0 0 chr15 23803198 23803509 -77577012 - AluY SINE Alu 0 311 1 2416 47 4 0 chr15 23804434 23804713 -77575808 + L1PA5 LINE L1 5875 6154 0 872 281 35 24 chr15 23805847 23806135 -77574386 - MER93a LTR ERV1 0 402 112 1920 61 32 4 chr15 23806159 23806406 -77574115 + AluY SINE Alu 44 297 -14 275 168 8 107 chr15 23806409 23806540 -77573981 - FRAM SINE Alu -26 140 23 505 184 112 10 chr15 23806907 23807005 -77573516 - FLAM_C SINE Alu -34 109 2 2210 101 0 19 chr15 23807278 23807585 -77572936 + AluSg SINE Alu 9 309 -1 208 279 0 0 chr15 23807851 23807894 -77572627 - MER5A DNA MER1_type -84 105 63 281 182 159 23 chr15 23808109 23808197 -77572324 - MLT1J2 LTR MaLR 0 450 351 278 226 189 79 chr15 23808260 23808450 -77572071 - MLT1J2 LTR MaLR -218 232 22 205 200 147 40 chr15 23808554 23808629 -77571892 + MER5A DNA MER1_type 18 100 -89 1651 187 0 17 chr15 23810125 23810425 -77570096 + AluJo SINE Alu 3 297 -15 262 268 0 0 chr15 23811023 23811079 -77569442 + (CA)n Simple_repeat Simple_repeat 2 57 0 1176 222 58 81 chr15 23811153 23811746 -77568775 + MER67B LTR ERV1 1 350 -164 2852 126 24 9 chr15 23811836 23812257 -77568264 + MSTA LTR MaLR 2 428 0 2232 177 77 7 chr15 23812655 23813096 -77567425 + L1MB2 LINE L1 5693 6164 -7 220 320 13 0 chr15 23813335 23813410 -77567111 + L2 LINE L2 3195 3270 -2 2996 177 16 19 chr15 23815317 23815881 -77564640 - L1PA16 LINE L1 -19 6147 5586 345 288 58 14 chr15 23816009 23816148 -77564373 - MIR SINE MIR -41 221 77 295 322 40 40 chr15 23816274 23816476 -77564045 - MLT1J LTR MaLR -2 509 308 1787 181 0 0 chr15 23816567 23816905 -77563616 - AluJb SINE Alu 0 338 1 924 276 104 3 chr15 23817072 23817456 -77563065 - L1MDa LINE L1 -1450 5090 4668 440 323 32 14 chr15 23817573 23817793 -77562728 - L1M4 LINE L1 -2451 3695 3472 1699 256 64 26 chr15 23817867 23818509 -77562012 - L1MDa LINE L1 -1840 4700 4035 2358 271 63 14 chr15 23818521 23819520 -77561001 - L1MDa LINE L1 -3873 2848 1757 * 2878 233 49 19 chr15 23819519 23820263 -77560258 - L1ME1 LINE L1 -198 6037 5250 1455 193 68 17 chr15 23820263 23820558 -77559963 - AluJo SINE Alu -2 310 1 2878 233 49 19 chr15 23820558 23820845 -77559676 - L1ME1 LINE L1 -985 5250 4973 417 285 89 49 chr15 23820844 23821370 -77559151 - L1ME1 LINE L1 -4839 1557 1011 * 21 36 0 0 chr15 23821423 23821451 -77559070 + AT_rich Low_complexity Low_complexity 1 28 0 280 257 88 9 chr15 23822278 23822391 -77558130 - L1M4 LINE L1 -2366 3780 3659 611 220 113 0 chr15 23825346 23825514 -77555007 - MER20 DNA MER1_type 0 219 33 860 247 49 63 chr15 23826006 23826102 -77554419 + L1MEc LINE L1 20 116 -6280 2156 96 21 0 chr15 23826102 23826384 -77554137 + AluSp SINE Alu 4 291 -22 207 0 0 0 chr15 23826384 23826407 -77554114 + (GA)n Simple_repeat Simple_repeat 2 24 0 860 247 49 63 chr15 23826407 23826657 -77553864 + L1MEc LINE L1 114 362 -6034 659 270 44 0 chr15 23826668 23826872 -77553649 + L1MEc LINE L1 2231 2443 -3772 228 231 77 33 chr15 23826873 23826955 -77553566 - LTR38 LTR ERV1 0 556 468 2032 142 3 0 chr15 23826955 23827258 -77553263 - AluSx SINE Alu -8 304 1 447 322 0 0 chr15 23827293 23827439 -77553082 + L1MEc LINE L1 2441 2586 -3629 2337 68 65 0 chr15 23827462 23827755 -77552766 - L1PB1 LINE L1 -6 6145 5834 1443 260 37 12 chr15 23827758 23828246 -77552275 + L1M4 LINE L1 4674 5173 -973 261 289 59 40 chr15 23829041 23829091 -77551430 - L1MA10 LINE L1 0 6334 6285 2443 241 102 24 chr15 23829091 23830444 -77550077 - L1ME2 LINE L1 -38 6126 4407 1118 119 0 0 chr15 23830463 23830622 -77549899 - AluSg/x SINE Alu 0 312 154 2540 228 48 159 chr15 23830660 23831371 -77549150 - L1ME2 LINE L1 -1854 4292 3504 189 0 0 0 chr15 23831381 23831402 -77549119 + (TG)n Simple_repeat Simple_repeat 2 22 0 1619 201 7 0 chr15 23831402 23831699 -77548822 - AluJb SINE Alu -10 302 1 2540 228 48 159 chr15 23831699 23832051 -77548470 - L1ME2 LINE L1 -2642 3504 3115 326 175 0 0 chr15 23832051 23832114 -77548407 - Alu SINE Alu 0 302 240 2540 228 48 159 chr15 23832114 23833192 -77547329 - L1ME2 LINE L1 -3031 3115 2333 188 382 22 0 chr15 23834075 23834164 -77546357 - MIR SINE MIR -79 183 93 197 272 39 48 chr15 23834562 23834665 -77545856 + L2 LINE L2 2995 3096 -217 1589 189 150 14 chr15 23835234 23835668 -77544853 + LTR54B LTR ERV1 5 497 -1 1811 131 6 51 chr15 23837132 23837473 -77543048 - AluSq SINE Alu 0 313 1 5720 148 18 10 chr15 23837735 23838751 -77541770 + L1 LINE L1 3830 4853 -1293 2490 171 107 13 chr15 23840296 23840336 -77540185 - MLT2B2 LTR ERVL -4 511 476 917 173 11 148 chr15 23840336 23840613 -77539908 + MER8 DNA MER2_type 1 239 0 2490 171 107 13 chr15 23840613 23841039 -77539482 - MLT2B2 LTR ERVL -39 476 1 234 0 0 0 chr15 23842172 23842198 -77538323 + (CA)n Simple_repeat Simple_repeat 2 27 0 220 333 12 0 chr15 23843282 23843363 -77537158 - MIR3 SINE MIR -1 207 126 4405 200 50 22 chr15 23843376 23844821 -77535700 + L1MB4 LINE L1 4277 5761 -419 1914 157 47 18 chr15 23845006 23845388 -77535133 + L1MB4 LINE L1 5781 6173 -7 1911 275 72 31 chr15 23845388 23845670 -77534851 - L1M4 LINE L1 -1917 4229 3960 2173 112 0 17 chr15 23845670 23845965 -77534556 - AluSx SINE Alu -22 290 1 1911 275 72 31 chr15 23845965 23846709 -77533812 - L1M4 LINE L1 -2186 3960 3158 1238 276 165 12 chr15 23846725 23847363 -77533158 - L1M4 LINE L1 -3116 3030 2296 661 309 133 46 chr15 23847396 23847892 -77532629 - L2 LINE L2 -2617 697 159 404 325 24 8 chr15 23848134 23848257 -77532264 + L2 LINE L2 3137 3261 -11 409 207 6 11 chr15 23849666 23849845 -77530676 + (CA)n Simple_repeat Simple_repeat 2 179 0 346 203 11 22 chr15 23849893 23850075 -77530446 + (CA)n Simple_repeat Simple_repeat 1 180 0 882 291 96 34 chr15 23851353 23851800 -77528721 - LTR33 LTR ERVL 0 521 47 412 284 153 6 chr15 23851844 23852020 -77528501 - MLT1J2 LTR MaLR -246 204 3 1912 255 75 54 chr15 23853641 23854298 -77526223 - MER21B LTR ERV1 -92 771 96 2375 88 3 10 chr15 23854298 23854606 -77525915 + AluSp SINE Alu 1 306 -7 1912 255 75 54 chr15 23854606 23854686 -77525835 - MER21B LTR ERV1 -767 96 19 762 191 0 31 chr15 23856392 23856554 -77523967 + L1MC/D LINE L1 5456 5612 -630 394 252 25 23 chr15 23856554 23856731 -77523790 - HERVL74 LTR ERVL -2407 1230 982 1875 199 14 6 chr15 23857360 23857716 -77522805 - MLT1A1 LTR MaLR 0 365 7 2294 194 29 12 chr15 23858003 23858493 -77522028 - LTR53 LTR ERVL -2 517 20 2543 174 44 25 chr15 23859705 23860228 -77520293 + L1MA6 LINE L1 5767 6299 -1 637 233 8 0 chr15 23860247 23860376 -77520145 + MLT1C LTR MaLR 292 421 -46 22 0 0 0 chr15 23860376 23860398 -77520123 + AT_rich Low_complexity Low_complexity 1 22 0 316 273 47 35 chr15 23861997 23862169 -77518352 + L1M4 LINE L1 4536 4709 -1437 378 0 0 0 chr15 23862795 23862837 -77517684 + (TG)n Simple_repeat Simple_repeat 1 42 0 2773 160 36 5 chr15 23862925 23863368 -77517153 + MSTB2 LTR MaLR 1 457 0 1787 216 67 17 chr15 23863717 23864193 -77516328 + L1MDa LINE L1 1041 1540 -5000 1661 234 131 30 chr15 23864191 23864537 -77515984 - L1MDa LINE L1 -5899 641 331 * 288 0 0 0 chr15 23864537 23864569 -77515952 + (TG)n Simple_repeat Simple_repeat 2 33 0 1661 234 131 30 chr15 23864569 23864786 -77515735 - L1MDa LINE L1 -6209 331 21 776 257 48 0 chr15 23865611 23865817 -77514704 + MER20 DNA MER1_type 3 218 -1 3699 80 4 0 chr15 23865869 23866319 -77514202 - MLT2A2 LTR ERVL -1 452 1 2400 77 0 19 chr15 23866907 23867231 -77513290 - AluYb8 SINE Alu 0 318 1 30 0 0 0 chr15 23867358 23867388 -77513133 + AT_rich Low_complexity Low_complexity 1 30 0 1520 129 47 0 chr15 23867395 23867627 -77512894 + L1MA5A LINE L1 6044 6286 -11 788 234 0 25 chr15 23867944 23868138 -77512383 + FRAM SINE Alu 1 187 0 2531 147 9 104 chr15 23868603 23869133 -77511388 - LTR12 LTR ERV1 -234 480 1 560 261 30 0 chr15 23869199 23869333 -77511188 - MER21B LTR ERV1 -422 441 304 219 329 29 0 chr15 23869794 23869864 -77510657 - MIR3 SINE MIR -52 156 85 2576 57 0 13 chr15 23870122 23870437 -77510084 + AluY SINE Alu 1 311 0 23 33 0 0 chr15 23871111 23871141 -77509380 + AT_rich Low_complexity Low_complexity 1 30 0 228 238 0 0 chr15 23871396 23871459 -77509062 + L1MC4 LINE L1 7980 8042 0 478 305 97 55 chr15 23871459 23871572 -77508949 + L1M4 LINE L1 2260 2367 -3779 288 53 0 0 chr15 23871572 23871610 -77508911 + (CA)n Simple_repeat Simple_repeat 1 38 0 478 305 97 55 chr15 23871610 23871928 -77508593 + L1M4 LINE L1 2367 2741 -3405 934 245 84 25 chr15 23871928 23872250 -77508271 - MER58B DNA MER1_type 0 341 1 478 305 97 55 chr15 23872250 23872489 -77508032 + L1M4 LINE L1 2741 2969 -3177 34 0 0 0 chr15 23872507 23872541 -77507980 + AT_rich Low_complexity Low_complexity 1 34 0 3714 254 76 37 chr15 23872585 23873475 -77507046 + L1MC3 LINE L1 2335 3188 -3238 810 124 84 22 chr15 23873475 23873653 -77506868 + L1MA5A LINE L1 6100 6288 -9 2190 124 0 0 chr15 23873653 23873943 -77506578 - AluSp SINE Alu -23 290 1 3714 254 76 37 chr15 23873943 23874981 -77505540 + L1MC3 LINE L1 3187 4342 -2084 8300 229 56 27 chr15 23875006 23875934 -77504587 + L1MC3 LINE L1 4666 5565 -2500 2007 131 17 14 chr15 23875934 23876231 -77504290 + AluSx SINE Alu 1 298 -14 8300 229 56 27 chr15 23876231 23878232 -77502289 + L1MC3 LINE L1 5565 7722 -343 2425 62 3 0 chr15 23878232 23878522 -77501999 + AluY SINE Alu 5 295 -16 8300 229 56 27 chr15 23878522 23878870 -77501651 + L1MC3 LINE L1 7722 8058 -7 22 35 0 0 chr15 23879134 23879163 -77501358 + AT_rich Low_complexity Low_complexity 1 29 0 249 337 32 11 chr15 23880391 23880486 -77500035 - L2 LINE L2 -20 3293 3197 1260 152 13 0 chr15 23881029 23881260 -77499261 + L1MA4A LINE L1 6065 6298 -5 325 246 155 16 chr15 23884025 23884212 -77496309 + MER58C DNA MER1_type 1 213 -2 421 288 144 55 chr15 23884217 23884680 -77495841 + HAL1b LINE L1 65 1644 -824 343 221 54 69 chr15 23884986 23885190 -77495331 + HAL1b LINE L1 680 880 -468 343 340 44 6 chr15 23885321 23885480 -77495041 + MER20B DNA MER1_type 7 171 -612 349 347 52 38 chr15 23885872 23886350 -77494171 + L1M4 LINE L1 2488 2972 -3174 345 291 52 70 chr15 23887026 23887256 -77493265 + L1MEc LINE L1 661 886 -5510 351 265 61 39 chr15 23887263 23887493 -77493028 + L1MEc LINE L1 947 1181 -5037 368 128 21 32 chr15 23887568 23887662 -77492859 + GA-rich Low_complexity Low_complexity 3 95 0 1732 255 47 72 chr15 23887663 23889375 -77491146 + L1MEc LINE L1 1437 3051 -3164 1035 252 91 23 chr15 23889470 23889774 -77490747 + MLT2F LTR ERVL 185 467 -196 189 0 0 0 chr15 23889774 23889795 -77490726 + (CCTG)n Simple_repeat Simple_repeat 3 23 0 1035 252 91 23 chr15 23889795 23889871 -77490650 + MLT2F LTR ERVL 467 536 -127 414 0 0 0 chr15 23889871 23889917 -77490604 + (CA)n Simple_repeat Simple_repeat 1 46 0 300 27 0 0 chr15 23889916 23889953 -77490568 + (GA)n Simple_repeat Simple_repeat 2 38 0 * 1035 252 91 23 chr15 23889917 23890011 -77490510 + MLT2F LTR ERVL 536 654 -9 232 192 48 67 chr15 23890095 23890199 -77490322 - MLT1I LTR MaLR -59 350 249 983 106 0 0 chr15 23890229 23890361 -77490160 + AluY SINE Alu 1 132 -179 2315 74 0 0 chr15 23890366 23890680 -77489841 + AluY SINE Alu 1 314 0 182 264 57 0 chr15 23890813 23890866 -77489655 + L2 LINE L2 3256 3311 -2 294 333 72 31 chr15 23891499 23891817 -77488704 + L2 LINE L2 2398 2728 -586 722 319 83 27 chr15 23891853 23892260 -77488261 + L2 LINE L2 2864 3293 -20 713 251 79 20 chr15 23892392 23892735 -77487786 - Charlie2a DNA MER1_type -1589 1273 911 1978 146 7 7 chr15 23892900 23893202 -77487319 - AluSx SINE Alu -10 302 1 1217 146 59 14 chr15 23893723 23893943 -77486578 - MER30 DNA MER1_type 0 230 1 697 286 53 11 chr15 23894583 23894865 -77485656 - L1P3 LINE L1 -319 5853 5561 26 30 0 0 chr15 23895233 23895266 -77485255 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr15 23895285 23895314 -77485207 + AT_rich Low_complexity Low_complexity 1 29 0 2097 138 0 0 chr15 23895510 23895806 -77484715 + AluSq SINE Alu 1 296 -17 231 236 14 28 chr15 23896527 23896599 -77483922 + GA-rich Low_complexity Low_complexity 4 74 0 24 32 0 0 chr15 23896694 23896725 -77483796 + AT_rich Low_complexity Low_complexity 1 31 0 236 294 0 0 chr15 23897651 23897743 -77482778 + Charlie2a DNA MER1_type 1401 1492 -1370 2266 107 7 0 chr15 23897843 23898143 -77482378 + AluSx SINE Alu 1 302 -10 348 225 117 0 chr15 23898211 23898322 -77482199 + L1MC4 LINE L1 7919 8042 0 1749 239 35 26 chr15 23898578 23899132 -77481389 + L1P3 LINE L1 2 545 -5330 22574 171 29 17 chr15 23899158 23904310 -77476211 + L1P3 LINE L1 430 5718 -743 25 31 0 0 chr15 23904792 23904824 -77475697 + AT_rich Low_complexity Low_complexity 1 32 0 2481 88 0 0 chr15 23907848 23908156 -77472365 + AluSc SINE Alu 1 308 -1 1928 138 31 7 chr15 23908795 23909084 -77471437 - AluSx SINE Alu -16 296 1 1155 201 17 8 chr15 23909660 23909899 -77470622 + MER4E LTR ERV1 539 779 0 1112 211 164 40 chr15 23910841 23911429 -77469092 + LTR48 LTR ERV1 1 644 0 598 221 7 107 chr15 23912691 23913131 -77467390 - L1M4 LINE L1 -2826 3320 2925 264 113 0 48 chr15 23914442 23914504 -77466017 + (TATTG)n Simple_repeat Simple_repeat 1 59 0 885 224 40 40 chr15 23914659 23914962 -77465559 - MLT1B LTR MaLR -87 303 1 335 196 145 58 chr15 23915012 23915150 -77465371 + L1ME2 LINE L1 5526 5675 -491 837 238 42 26 chr15 23915154 23915419 -77465102 - MSTC LTR MaLR -3 425 157 245 123 15 77 chr15 23915564 23915629 -77464892 - MSTC LTR MaLR -362 66 6 341 219 78 23 chr15 23915632 23915760 -77464761 + L1ME2 LINE L1 5668 5802 -364 200 89 67 0 chr15 23915851 23915896 -77464625 + (TA)n Simple_repeat Simple_repeat 2 49 0 201 147 0 0 chr15 23915941 23915975 -77464546 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 198 192 0 0 chr15 23915996 23916048 -77464473 + (TA)n Simple_repeat Simple_repeat 1 52 0 241 215 177 0 chr15 23916048 23916127 -77464394 + L1ME2 LINE L1 5844 5936 -228 366 307 15 0 chr15 23916162 23916299 -77464222 + L1MA10 LINE L1 6176 6314 -20 3816 143 29 47 chr15 23917551 23917834 -77462687 + L1MB3 LINE L1 5428 5715 -468 3515 132 23 30 chr15 23917834 23918441 -77462080 - LTR26 LTR ERV1 0 603 1 3816 143 29 47 chr15 23918441 23918925 -77461596 + L1MB3 LINE L1 5715 6181 -2 22 80 0 0 chr15 23918933 23918983 -77461538 + AT_rich Low_complexity Low_complexity 1 50 0 1288 159 40 36 chr15 23919178 23919401 -77461120 + L1MA5 LINE L1 6022 6248 -52 1949 107 3 58 chr15 23919401 23919710 -77460811 + AluSx SINE Alu 1 292 -20 1288 159 40 36 chr15 23919710 23919762 -77460759 + L1MA5 LINE L1 6248 6298 -2 596 285 16 36 chr15 23920609 23920802 -77459719 + MIR SINE MIR 44 232 -30 517 297 28 31 chr15 23921267 23921553 -77458968 + L1M4 LINE L1 4422 4706 -1440 5722 168 19 4 chr15 23921554 23922611 -77457910 - L1 LINE L1 -1428 4718 3646 3725 179 37 13 chr15 23922612 23923370 -77457151 + L1MA7 LINE L1 5516 6291 0 4134 152 197 20 chr15 23923453 23924743 -77455778 - pTR5 LTR ERV1 -1 2437 741 303 268 117 57 chr15 23924747 23925012 -77455509 + L1M4 LINE L1 4793 5073 -1073 192 152 0 0 chr15 23925885 23925918 -77454603 + A-rich Low_complexity Low_complexity 3 35 0 325 267 35 12 chr15 23926711 23926797 -77453724 + L1MC4 LINE L1 6614 6701 -1341 322 292 45 11 chr15 23926772 23926861 -77453660 - L1MC4 LINE L1 -1340 6702 6611 * 308 255 128 11 chr15 23927100 23927194 -77453327 + L1MC4 LINE L1 6601 6705 -1337 305 301 94 8 chr15 23927149 23927267 -77453254 - L1MC4 LINE L1 -1339 6703 6589 * 218 211 0 0 chr15 23927267 23927305 -77453216 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 306 0 0 0 chr15 23928551 23928585 -77451936 + (CA)n Simple_repeat Simple_repeat 2 35 0 1735 142 14 0 chr15 23929232 23929520 -77451001 + L1MA8 LINE L1 4488 4779 -1367 894 192 12 6 chr15 23929520 23929692 -77450829 + AluJb SINE Alu 117 289 -23 333 0 0 0 chr15 23929694 23929731 -77450790 + (CA)n Simple_repeat Simple_repeat 2 38 0 3077 133 19 35 chr15 23929731 23930458 -77450063 + L1MA8 LINE L1 4790 5498 -793 3772 131 38 0 chr15 23930458 23931017 -77449504 - LTR19B LTR ERV1 0 580 1 3077 133 19 35 chr15 23931017 23931241 -77449280 + L1MA8 LINE L1 5498 5724 -567 3404 97 19 13 chr15 23931241 23931732 -77448789 - LTR15 LTR ERV1 0 595 1 1869 152 108 8 chr15 23931732 23932101 -77448420 + L1MA8 LINE L1 5721 6126 -165 379 127 89 0 chr15 23932104 23932183 -77448338 + L1 LINE L1 5200 5285 -861 1009 66 22 0 chr15 23932184 23932321 -77448200 + L1MA8 LINE L1 6127 6266 -25 1944 162 29 21 chr15 23933805 23934145 -77446376 + MLT2D LTR ERVL 31 373 -41 198 236 0 0 chr15 23934165 23934220 -77446301 + (TA)n Simple_repeat Simple_repeat 1 55 0 404 163 29 0 chr15 23934237 23934317 -77446204 - MLT2D LTR ERVL -40 480 301 213 261 0 0 chr15 23934317 23934363 -77446158 + (TA)n Simple_repeat Simple_repeat 1 46 0 27 29 0 0 chr15 23934599 23934633 -77445888 + AT_rich Low_complexity Low_complexity 1 34 0 480 275 8 23 chr15 23935790 23935921 -77444600 + L2 LINE L2 3144 3272 0 312 202 34 56 chr15 23935936 23936025 -77444496 + L1MCa LINE L1 2004 2090 -4336 3646 214 66 7 chr15 23937622 23938453 -77442068 + L1MC3 LINE L1 6395 7274 -511 375 287 65 57 chr15 23939105 23939335 -77441186 - MIR SINE MIR 0 262 31 1512 223 56 11 chr15 23939745 23940184 -77440337 - MER89 LTR ERV1 0 559 1 525 267 0 0 chr15 23940354 23940614 -77439907 + (CA)n Simple_repeat Simple_repeat 1 260 0 1743 174 0 7 chr15 23941408 23941706 -77438815 - AluJb SINE Alu -16 296 1 479 313 82 5 chr15 23941731 23941939 -77438582 + MER58A DNA MER1_type 1 224 0 1600 180 35 38 chr15 23942222 23942588 -77437933 + MLT1A1 LTR MaLR 1 365 0 1313 203 14 10 chr15 23943718 23944013 -77436508 + L1MA5 LINE L1 6005 6300 0 1009 275 66 22 chr15 23946476 23946883 -77433638 - LTR37A LTR ERV1 -1 425 1 524 234 85 21 chr15 23947274 23947415 -77433106 - MIR SINE MIR -6 256 107 327 234 0 0 chr15 23948576 23948640 -77431881 - L1MC4 LINE L1 -1339 6703 6640 1121 169 0 5 chr15 23948680 23948869 -77431652 - AluJo SINE Alu -39 273 86 212 300 80 10 chr15 23949319 23949419 -77431102 - MIR SINE MIR 0 262 156 955 196 174 42 chr15 23949420 23949685 -77430836 + MER92B LTR ERV1 1 300 -336 788 243 26 13 chr15 23949723 23949949 -77430572 + MER92B LTR ERV1 393 621 -15 302 212 40 22 chr15 23949960 23950053 -77430468 - MIR SINE MIR -58 150 63 1072 213 39 67 chr15 23950400 23950540 -77429981 + MLT1A1 LTR MaLR 1 143 -222 780 162 0 28 chr15 23950540 23950682 -77429839 - L1PA10 LINE L1 -6 6162 6025 1072 213 39 67 chr15 23950682 23950898 -77429623 + MLT1A1 LTR MaLR 143 347 -18 2701 235 31 10 chr15 23950952 23951556 -77428965 - MER82 DNA MER2_type -11 642 26 3173 128 41 41 chr15 23952449 23953057 -77427464 + MER4B LTR ERV1 1 779 0 1300 203 117 16 chr15 23953987 23954572 -77425949 + LTR48 LTR ERV1 1 644 0 549 200 0 10 chr15 23955552 23955652 -77424869 - MLT1A1 LTR MaLR 0 365 267 247 374 71 13 chr15 23955671 23955826 -77424695 + L2 LINE L2 3109 3272 0 450 284 14 27 chr15 23956359 23956507 -77424014 - MIR SINE MIR -54 208 63 303 293 72 83 chr15 23956705 23957067 -77423454 + MLT1I LTR MaLR 50 407 -2 355 296 71 33 chr15 23959863 23960103 -77420418 - MER34B LTR ERV1 0 565 317 1362 214 60 3 chr15 23961061 23961360 -77419161 + MER58B DNA MER1_type 26 341 0 2171 140 79 25 chr15 23961385 23961774 -77418747 + MSTC LTR MaLR 1 410 -18 1293 132 10 5 chr15 23961774 23961971 -77418550 + MSTA LTR MaLR 1 198 -230 1170 96 0 24 chr15 23961972 23962138 -77418383 + AluSp SINE Alu 138 299 -14 1576 130 13 4 chr15 23962140 23962378 -77418143 + MSTA LTR MaLR 189 428 0 3490 106 32 4 chr15 23962472 23962971 -77417550 + LTR10D LTR ERV1 1 513 0 308 152 70 13 chr15 23963847 23964005 -77416516 + (CA)n Simple_repeat Simple_repeat 1 167 0 424 213 40 29 chr15 23964046 23964220 -77416301 + (CA)n Simple_repeat Simple_repeat 1 176 0 217 145 32 0 chr15 23965120 23965182 -77415339 + (TA)n Simple_repeat Simple_repeat 2 65 0 464 304 34 14 chr15 23965228 23965376 -77415145 + L2 LINE L2 3162 3312 -1 2023 174 61 30 chr15 23966668 23967075 -77413446 + MSTB LTR MaLR 7 426 0 196 279 124 90 chr15 23967749 23967950 -77412571 + L3 LINE CR1 1312 1519 -58 5939 150 28 25 chr15 23968119 23969462 -77411059 - L1MA4A LINE L1 0 7005 5649 3837 193 60 9 chr15 23969462 23970334 -77410187 - L1MA4A LINE L1 -5933 916 1 450 265 74 37 chr15 23970477 23970692 -77409829 - L1ME LINE L1 -367 5754 5532 188 268 0 0 chr15 23971129 23971170 -77409351 - MIR SINE MIR -6 256 216 181 264 97 0 chr15 23971985 23972057 -77408464 + MIR SINE MIR 107 185 -77 215 0 0 62 chr15 23972111 23972143 -77408378 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 2028 112 97 9 chr15 23972166 23972505 -77408016 + THE1C LTR MaLR 4 372 -3 21 0 0 0 chr15 23973323 23973344 -77407177 + AT_rich Low_complexity Low_complexity 1 21 0 659 191 64 0 chr15 23973780 23973921 -77406600 + L1MB3 LINE L1 6027 6176 -7 663 280 125 11 chr15 23974455 23974734 -77405787 - L1ME3A LINE L1 -199 5971 5661 243 0 0 0 chr15 23974887 23974914 -77405607 + (A)n Simple_repeat Simple_repeat 1 27 0 2215 199 64 42 chr15 23976145 23977322 -77403199 - L1M4c LINE L1 -4281 2365 920 450 68 122 40 chr15 23977322 23977396 -77403125 + THE1C LTR MaLR 1 80 -295 673 94 10 10 chr15 23977402 23977498 -77403023 + MSTA LTR MaLR 333 428 0 1628 290 55 70 chr15 23977498 23978435 -77402086 - L1M4c LINE L1 -5618 924 2 810 193 37 32 chr15 23978469 23978656 -77401865 + MLT1E2 LTR MaLR 1 188 -438 * 992 287 94 3 chr15 23978636 23978922 -77401599 + MLT1E2 LTR MaLR 315 626 0 2314 243 26 3 chr15 23978941 23979513 -77401008 + MLT1E2-int LTR MaLR 6 590 -781 1302 230 40 162 chr15 23979719 23980489 -77400032 + MLT1E2-int LTR MaLR 696 1371 0 1320 231 137 70 chr15 23980489 23981074 -77399447 + MLT1E2 LTR MaLR 1 624 -2 300 340 26 26 chr15 23981289 23981445 -77399076 - L2 LINE L2 -1 3271 3116 299 231 74 65 chr15 23981624 23981694 -77398827 - MER5A DNA MER1_type -1 188 115 3751 121 24 121 chr15 23981694 23982454 -77398067 + LTR12 LTR ERV1 3 688 0 299 231 74 65 chr15 23982454 23982491 -77398030 - MER5A DNA MER1_type -74 115 80 366 245 57 0 chr15 23982783 23982889 -77397632 + MLT1J LTR MaLR 58 169 -342 991 273 50 14 chr15 23983564 23983927 -77396594 - L1MD2 LINE L1 -10 6349 5974 * 2540 251 67 47 chr15 23983905 23985037 -77395484 - L1M4 LINE L1 -1610 4536 3382 3990 245 50 41 chr15 23985225 23986694 -77393827 - L1M4 LINE L1 -1744 4402 2920 264 113 0 48 chr15 23987993 23988055 -77392466 + (TATTG)n Simple_repeat Simple_repeat 1 59 0 1016 218 46 46 chr15 23988209 23988512 -77392009 - MLT1B LTR MaLR -87 303 1 390 158 162 77 chr15 23988539 23988698 -77391823 + L1ME2 LINE L1 5508 5675 -491 971 235 41 26 chr15 23988698 23988966 -77391555 - MSTC LTR MaLR 0 428 157 376 182 0 0 chr15 23989104 23989170 -77391351 - MSTC LTR MaLR -360 68 3 373 224 96 8 chr15 23989172 23989297 -77391224 + L1ME2 LINE L1 5671 5806 -360 31 44 0 0 chr15 23989381 23989426 -77391095 + AT_rich Low_complexity Low_complexity 1 45 0 201 147 0 0 chr15 23989471 23989505 -77391016 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 198 192 0 0 chr15 23989526 23989578 -77390943 + (TA)n Simple_repeat Simple_repeat 1 52 0 273 215 177 0 chr15 23989578 23989657 -77390864 + L1ME2 LINE L1 5844 5936 -228 * 540 265 163 47 chr15 23989654 23989847 -77390674 + L1MA10 LINE L1 5956 6334 0 806 204 7 0 chr15 23990237 23990379 -77390142 + AluJb SINE Alu 136 278 -34 21 0 0 0 chr15 23990770 23990791 -77389730 + AT_rich Low_complexity Low_complexity 1 21 0 755 137 17 23 chr15 23991640 23991815 -77388706 + CT-rich Low_complexity Low_complexity 4 177 0 326 316 73 9 chr15 23991819 23991847 -77388674 + L2 LINE L2 3079 3104 -209 2103 132 6 3 chr15 23991847 23992158 -77388363 - AluSx SINE Alu 0 312 1 326 316 73 9 chr15 23992158 23992347 -77388174 + L2 LINE L2 3104 3310 -3 1437 177 20 96 chr15 23993177 23993584 -77386937 - MLT1B LTR MaLR -7 383 8 2194 118 30 0 chr15 23994310 23994614 -77385907 + AluSq SINE Alu 1 313 0 2132 112 0 3 chr15 23995030 23995359 -77385162 + AluSx SINE Alu 1 328 0 259 324 43 7 chr15 23995513 23995652 -77384869 + MLT1J LTR MaLR 54 197 -314 409 82 0 0 chr15 23995713 23995794 -77384727 + L1PA5 LINE L1 6068 6131 0 249 310 26 9 chr15 23995801 23995914 -77384607 + MLT1J LTR MaLR 389 503 -8 578 189 9 0 chr15 23996873 23996979 -77383542 - MLT1D LTR MaLR -376 129 23 1823 263 56 68 chr15 23997001 23997681 -77382840 - MLT1D-int LTR MaLR -8 1363 692 1686 227 107 71 chr15 23997844 23998464 -77382057 - MLT1D-int LTR MaLR -727 644 3 228 200 0 0 chr15 23998467 23998507 -77382014 - MLT1D LTR MaLR 0 626 587 279 243 27 10 chr15 23998518 23998614 -77381907 - MLT1D LTR MaLR -111 394 317 238 200 0 0 chr15 23998742 23998787 -77381734 - MLT1D LTR MaLR -459 46 2 1496 201 64 38 chr15 23998929 23999348 -77381173 - MER21B LTR ERV1 -58 805 376 1672 242 55 21 chr15 23999351 23999748 -77380773 - MER21B LTR ERV1 -427 436 23 414 0 0 0 chr15 23999748 23999794 -77380727 + (TA)n Simple_repeat Simple_repeat 2 47 0 1672 242 55 21 chr15 23999794 23999818 -77380703 - MER21B LTR ERV1 -840 23 1 301 315 16 8 chr15 23999937 24000064 -77380457 + MLT1L LTR MaLR 483 610 -5 272 314 58 0 chr15 24002644 24002730 -77377791 + L2 LINE L2 3213 3303 -10 26 0 0 0 chr15 24002730 24002756 -77377765 + AT_rich Low_complexity Low_complexity 1 26 0 34 55 0 0 chr15 24002836 24002891 -77377630 + AT_rich Low_complexity Low_complexity 1 55 0 2005 135 28 0 chr15 24002895 24003184 -77377337 + AluSg SINE Alu 1 297 -13 2309 238 26 42 chr15 24003210 24003824 -77376697 + L1M3e LINE L1 467 1070 -6419 3331 230 24 25 chr15 24003825 24004743 -77375778 + L1M3e LINE L1 2019 2864 -4701 205 0 114 0 chr15 24004743 24004778 -77375743 + A-rich Low_complexity Low_complexity 2 40 0 3331 230 24 25 chr15 24004778 24004981 -77375540 + L1M3e LINE L1 2864 3066 -4499 623 235 31 0 chr15 24004980 24005142 -77375379 + L1MA8 LINE L1 6125 6291 0 * 25 31 0 0 chr15 24005170 24005202 -77375319 + AT_rich Low_complexity Low_complexity 1 32 0 243 225 75 38 chr15 24005249 24005329 -77375192 + L1ME2 LINE L1 4 86 -5984 1484 276 161 29 chr15 24005773 24006823 -77373698 + L1ME2 LINE L1 3950 5138 -942 1348 285 81 37 chr15 24006830 24007469 -77373052 + L1ME2 LINE L1 5193 5865 -233 2289 47 54 0 chr15 24007469 24007747 -77372774 + AluY SINE Alu 1 293 -18 1348 285 81 37 chr15 24007747 24007788 -77372733 + L1ME2 LINE L1 5865 5903 -195 2487 90 0 0 chr15 24008448 24008760 -77371761 - AluSx SINE Alu 0 312 1 180 357 108 8 chr15 24009549 24009678 -77370843 - L2 LINE L2 -4 3268 3127 308 263 26 53 chr15 24011717 24011813 -77368708 + MER92C LTR ERV1 230 322 -232 4883 145 56 18 chr15 24011813 24012117 -77368404 + MER4D LTR ERV1 1 292 -611 3433 133 27 15 chr15 24012117 24012664 -77367857 - MER41C LTR ERV1 0 554 1 4883 145 56 18 chr15 24012664 24013229 -77367292 + MER4D LTR ERV1 292 903 0 2137 115 0 17 chr15 24013247 24013568 -77366953 + AluSg SINE Alu 1 316 0 622 269 42 23 chr15 24013577 24013793 -77366728 + MER92C LTR ERV1 308 527 -27 3553 225 130 27 chr15 24014710 24016372 -77364149 + L1MDb LINE L1 7 1865 -4541 1504 292 36 8 chr15 24016384 24016969 -77363552 + L1M4 LINE L1 4128 4728 -1418 320 217 0 0 chr15 24017698 24017767 -77362754 - LTR30 LTR ERV1 -102 620 552 1809 102 61 41 chr15 24017768 24018199 -77362322 - LTR12 LTR ERV1 -406 2032 1 2472 104 52 0 chr15 24018199 24018546 -77361975 - HERV9 LTR ERV1 0 8399 8035 849 198 119 18 chr15 24018574 24018801 -77361720 - LTR32 LTR ERVL -51 420 171 589 179 71 50 chr15 24019110 24019250 -77361271 - LTR32 LTR ERVL -286 185 43 569 186 39 0 chr15 24019287 24019443 -77361078 + Charlie5 DNA MER1_type 2389 2550 -62 3985 126 5 44 chr15 24019510 24019788 -77360733 + MER41B LTR ERV1 1 288 -347 4384 100 28 15 chr15 24019788 24020440 -77360081 - PABL_A LTR ERV1 0 660 1 3985 126 5 44 chr15 24020440 24020821 -77359700 + MER41B LTR ERV1 288 634 -1 563 265 45 54 chr15 24020852 24021075 -77359446 - MER58A DNA MER1_type -3 221 1 271 248 8 8 chr15 24021351 24021468 -77359053 + CT-rich Low_complexity Low_complexity 1 117 0 205 155 35 0 chr15 24021501 24021559 -77358962 + CT-rich Low_complexity Low_complexity 1 60 0 934 221 13 32 chr15 24022003 24022364 -77358157 - L1M LINE L1 -743 5403 5076 201 342 75 20 chr15 24022485 24022780 -77357741 - L2 LINE L2 -2051 1263 865 2365 70 0 13 chr15 24022979 24023293 -77357228 + AluY SINE Alu 1 310 -1 218 173 58 58 chr15 24023830 24023882 -77356639 - MIR SINE MIR -134 74 23 189 121 69 138 chr15 24025132 24025190 -77355331 - L2 LINE L2 -947 2367 2314 311 288 102 34 chr15 24026851 24027028 -77353493 - MIR SINE MIR -13 249 61 517 273 87 6 chr15 24027111 24027272 -77353249 + MIR SINE MIR 48 221 -41 1040 187 21 0 chr15 24027405 24027604 -77352917 + L1PB4 LINE L1 5743 5949 -207 490 222 88 107 chr15 24027606 24027947 -77352574 - LTR58 LTR ERV1 0 670 350 316 224 90 0 chr15 24028145 24028212 -77352309 - LTR35 LTR ERV1 -543 75 3 1188 141 50 0 chr15 24028212 24028411 -77352110 + L1PB4 LINE L1 5948 6156 0 1974 234 64 84 chr15 24028413 24028473 -77352048 - L1MDa LINE L1 -1241 5299 5239 606 245 99 0 chr15 24028473 24028624 -77351897 + FAM SINE Alu 2 167 -8 1974 234 64 84 chr15 24028624 24029475 -77351046 - L1MDa LINE L1 -1301 5239 4407 2775 233 50 92 chr15 24029480 24030391 -77350130 - L1MDa LINE L1 -2450 4090 3262 185 32 0 65 chr15 24030391 24030422 -77350099 + (CAAAT)n Simple_repeat Simple_repeat 1 29 0 2775 233 50 92 chr15 24030422 24030994 -77349527 - L1MDa LINE L1 -3278 3262 2668 4010 188 92 11 chr15 24031007 24032004 -77348517 - L1MDa LINE L1 -4384 2156 1079 1478 236 118 25 chr15 24032003 24032477 -77348044 - L1MDa LINE L1 -6016 524 7 * 280 289 12 35 chr15 24032830 24033003 -77347518 + (CACCC)n Simple_repeat Simple_repeat 2 170 0 1684 147 3 18 chr15 24033599 24033885 -77346636 + AluSx SINE Alu 1 282 -30 582 60 0 0 chr15 24033886 24033969 -77346552 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 442 279 75 30 chr15 24034401 24034602 -77345919 + L1MC3 LINE L1 5431 5640 -481 349 258 66 101 chr15 24034613 24034811 -77345710 + L1MC3 LINE L1 5718 5908 -1900 2220 94 3 7 chr15 24034853 24035162 -77345359 + AluSp SINE Alu 1 308 -5 3752 133 38 0 chr15 24036213 24036792 -77343729 + LTR26 LTR ERV1 3 603 0 2098 110 3 0 chr15 24037115 24037405 -77343116 + AluSx SINE Alu 6 296 -16 903 237 34 17 chr15 24037695 24037931 -77342590 + LTR40b LTR ERVL 1 240 -222 475 205 188 0 chr15 24037957 24038069 -77342452 + LTR40b LTR ERVL 312 444 -18 314 229 43 0 chr15 24038111 24038181 -77342340 + MIR SINE MIR 120 192 -70 5250 211 58 27 chr15 24038435 24039701 -77340820 + L1MC3 LINE L1 6312 7616 -169 353 359 6 6 chr15 24040363 24040519 -77340002 + (CA)n Simple_repeat Simple_repeat 2 157 0 201 175 0 0 chr15 24040531 24040571 -77339950 + (CA)n Simple_repeat Simple_repeat 1 40 0 203 276 10 0 chr15 24040665 24040763 -77339758 + (CATA)n Simple_repeat Simple_repeat 4 102 0 300 262 12 12 chr15 24040776 24040860 -77339661 + (CA)n Simple_repeat Simple_repeat 2 85 0 463 255 9 9 chr15 24040942 24041048 -77339473 - MER58A DNA MER1_type 0 142 37 1065 273 105 19 chr15 24041071 24042307 -77338214 - L1ME3A LINE L1 -18 6152 4696 201 175 0 0 chr15 24042323 24042363 -77338158 + GA-rich Low_complexity Low_complexity 2 41 0 2170 123 0 0 chr15 24043089 24043397 -77337124 + AluSq SINE Alu 4 311 -2 200 281 99 47 chr15 24045847 24046039 -77334482 + L2 LINE L2 2682 2883 -431 285 309 12 0 chr15 24047135 24047216 -77333305 + L3 LINE CR1 1346 1427 -150 6535 164 19 11 chr15 24048021 24050237 -77330284 + L1PB2 LINE L1 3920 6151 0 285 265 0 14 chr15 24050454 24050553 -77329968 + MIR SINE MIR 77 170 -38 237 221 0 0 chr15 24052094 24052162 -77328359 + (CA)n Simple_repeat Simple_repeat 1 68 0 1237 187 14 28 chr15 24052620 24052909 -77327612 - L1MA4 LINE L1 -7 6293 6009 23 88 0 0 chr15 24053360 24053394 -77327127 + AT_rich Low_complexity Low_complexity 1 34 0 32 43 0 0 chr15 24053441 24053487 -77327034 + AT_rich Low_complexity Low_complexity 1 46 0 322 268 192 56 chr15 24055058 24055190 -77325331 - MIR SINE MIR -30 232 63 216 0 0 0 chr15 24055190 24055214 -77325307 + (CA)n Simple_repeat Simple_repeat 1 24 0 322 268 192 56 chr15 24055214 24055279 -77325242 - MIR SINE MIR -199 63 8 303 248 53 60 chr15 24058054 24058187 -77322334 + L1MEd LINE L1 957 1088 -5031 227 290 21 43 chr15 24058229 24058322 -77322199 + LTR67 LTR ERVL 78 168 -389 282 294 178 33 chr15 24058591 24058771 -77321750 + ERVL LTR ERVL 2385 2590 -3174 235 258 88 25 chr15 24058800 24058959 -77321562 + L1M4 LINE L1 4541 4709 -1437 312 304 64 41 chr15 24059249 24059469 -77321052 + L1MEd LINE L1 3021 3245 -2884 2133 94 0 0 chr15 24059855 24060142 -77320379 + AluSc SINE Alu 15 301 -8 1795 119 60 11 chr15 24061669 24061954 -77318567 - AluSx SINE Alu -13 299 1 2609 241 35 52 chr15 24062787 24063533 -77316988 + MER21B LTR ERV1 19 751 -112 292 212 0 15 chr15 24063972 24064038 -77316483 - MLT1K LTR MaLR 0 588 524 237 258 52 52 chr15 24064086 24064183 -77316338 + MLT1G1 LTR MaLR 1 97 -498 245 230 50 30 chr15 24064356 24064471 -77316050 + MLT1H LTR MaLR 437 590 0 279 133 13 40 chr15 24065251 24065326 -77315195 + T-rich Low_complexity Low_complexity 3 75 0 195 42 0 0 chr15 24066759 24066783 -77313738 + (A)n Simple_repeat Simple_repeat 1 24 0 723 314 97 75 chr15 24067132 24067959 -77312562 + HAL1b LINE L1 1 845 -503 570 286 114 87 chr15 24068000 24068727 -77311794 + L1M2 LINE L1 2614 3387 -3461 22 0 0 0 chr15 24068785 24068807 -77311714 + AT_rich Low_complexity Low_complexity 1 22 0 250 286 87 29 chr15 24068807 24069292 -77311229 + L1M2 LINE L1 3516 4054 -2794 1232 237 26 66 chr15 24069393 24069895 -77310626 + L1ME4a LINE L1 4746 5227 -919 2399 213 59 0 chr15 24069902 24070408 -77310113 + L1MD1 LINE L1 5707 6242 0 521 307 164 17 chr15 24070570 24071101 -77309420 + L1ME4a LINE L1 5287 5895 -226 284 293 30 10 chr15 24071145 24071244 -77309277 + L1ME4a LINE L1 5964 6064 -57 881 173 0 14 chr15 24073398 24073767 -77306754 + CT-rich Low_complexity Low_complexity 1 363 0 194 88 0 29 chr15 24073769 24073803 -77306718 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr15 24074041 24074062 -77306459 + AT_rich Low_complexity Low_complexity 1 21 0 189 154 0 0 chr15 24074956 24074995 -77305526 + (CTA)n Simple_repeat Simple_repeat 2 40 0 2343 92 7 3 chr15 24075216 24075522 -77304999 + AluSc SINE Alu 1 307 -2 582 255 64 21 chr15 24076192 24076380 -77304141 - MIR SINE MIR -11 251 56 1631 181 28 39 chr15 24077248 24077635 -77302886 + MLT1B LTR MaLR 1 383 -7 402 39 0 0 chr15 24077717 24077769 -77302752 + (TG)n Simple_repeat Simple_repeat 2 53 0 1351 217 95 0 chr15 24078278 24078624 -77301897 - MLT1B LTR MaLR -11 379 1 239 265 12 12 chr15 24078941 24079024 -77301497 + CT-rich Low_complexity Low_complexity 1 83 0 229 305 78 39 chr15 24081537 24081665 -77298856 - MIR SINE MIR -18 244 112 2869 221 18 15 chr15 24081754 24082559 -77297962 - L1 LINE L1 -3324 3058 2244 729 127 25 0 chr15 24082559 24082677 -77297844 + L1MB1 LINE L1 6048 6168 0 386 215 68 61 chr15 24083215 24083378 -77297143 + MER103 DNA DNA 1 164 -2 233 333 143 0 chr15 24083828 24083975 -77296546 - L3 LINE CR1 -236 1341 1174 223 297 27 63 chr15 24084456 24084567 -77295954 - MIR3 SINE MIR -6 202 96 299 305 23 23 chr15 24084572 24084703 -77295818 - L2 LINE L2 -1 3312 3182 406 344 66 35 chr15 24086047 24086530 -77293991 + L1MCc LINE L1 40 537 -5886 1633 268 93 22 chr15 24086648 24087904 -77292617 + L1MCc LINE L1 830 2179 -4762 1058 180 0 0 chr15 24087902 24088096 -77292425 + L1M4 LINE L1 5620 5813 -361 * 2760 207 23 16 chr15 24088093 24088707 -77291814 + L1MB5 LINE L1 5344 5961 -213 6996 254 84 46 chr15 24088713 24092150 -77288371 - L1M4c LINE L1 -1188 5194 1515 1426 225 169 6 chr15 24092352 24093410 -77287111 + L1ME1 LINE L1 4853 6137 -29 1518 167 8 8 chr15 24093514 24093759 -77286762 - AluJo SINE Alu -67 245 1 23 0 0 0 chr15 24093762 24093785 -77286736 + AT_rich Low_complexity Low_complexity 1 23 0 1033 268 77 18 chr15 24093860 24094319 -77286202 + L1ME1 LINE L1 5663 6144 -22 225 154 0 0 chr15 24094864 24094903 -77285618 + T-rich Low_complexity Low_complexity 4 42 0 232 190 35 0 chr15 24094904 24094962 -77285559 + CT-rich Low_complexity Low_complexity 3 62 0 23 0 0 0 chr15 24096073 24096096 -77284425 + AT_rich Low_complexity Low_complexity 1 23 0 400 278 129 72 chr15 24101878 24102162 -77278359 - L2 LINE L2 0 3313 3047 2080 102 0 0 chr15 24102162 24102428 -77278093 + AluSx SINE Alu 33 298 -14 400 278 129 72 chr15 24102428 24102659 -77277862 - L2 LINE L2 -266 3047 2776 7342 223 64 47 chr15 24102662 24103350 -77277171 + L1MB3 LINE L1 2777 3452 -2714 1802 179 3 10 chr15 24103350 24103640 -77276881 + AluJb SINE Alu 1 288 -24 7342 223 64 47 chr15 24103640 24103951 -77276570 + L1MB3 LINE L1 3452 3756 -2410 2214 98 41 0 chr15 24103951 24104246 -77276275 + AluSc SINE Alu 2 308 -1 7342 223 64 47 chr15 24104246 24105871 -77274650 + L1MB3 LINE L1 3756 5441 -725 1134 138 37 0 chr15 24105873 24106061 -77274460 + L1MB3 LINE L1 5618 5812 -359 1038 214 97 35 chr15 24107185 24107475 -77273046 + MER92B LTR ERV1 1 308 -328 862 197 25 25 chr15 24107543 24107746 -77272775 + MER92B LTR ERV1 434 636 0 238 118 0 171 chr15 24108763 24108839 -77271682 - LTR39 LTR ERV1 -720 63 1 912 96 0 7 chr15 24109227 24109362 -77271159 - L1PB1 LINE L1 0 6151 6018 1439 158 22 19 chr15 24110168 24110481 -77270040 - LTR23 LTR ERV1 0 467 122 1650 133 59 11 chr15 24110600 24110871 -77269650 - AluSx SINE Alu -18 294 11 944 199 0 6 chr15 24114148 24114329 -77266192 + L1MB3 LINE L1 5997 6176 -7 210 319 103 36 chr15 24116321 24116489 -77264032 - MIR SINE MIR -58 150 8 2042 30 0 0 chr15 24116688 24116924 -77263597 - L1PA2 LINE L1 -1133 5013 4778 7892 19 2 0 chr15 24116924 24118073 -77262448 + L1PA2 LINE L1 5004 6155 0 308 176 30 5 chr15 24118555 24118636 -77261885 + MLT1H LTR MaLR 41 164 -385 374 311 23 15 chr15 24120152 24120284 -77260237 - L2 LINE L2 -5 3308 3176 1971 225 43 82 chr15 24120287 24120389 -77260132 + L1M4c LINE L1 6 110 -6170 1581 210 92 16 chr15 24120389 24120822 -77259699 - MLT1C LTR MaLR 0 467 2 1971 225 43 82 chr15 24120822 24121164 -77259357 + L1M4c LINE L1 110 464 -5816 362 69 17 0 chr15 24121164 24121222 -77259299 + (CA)n Simple_repeat Simple_repeat 2 60 0 1971 225 43 82 chr15 24121222 24121829 -77258692 + L1M4c LINE L1 464 1124 -5156 1398 151 12 8 chr15 24121829 24122081 -77258440 + L1MB3 LINE L1 5931 6183 0 1971 225 43 82 chr15 24122081 24122265 -77258256 + L1M4c LINE L1 1124 1314 -4966 3462 243 32 1 chr15 24122279 24122639 -77257882 + L1M4c LINE L1 2039 2386 -3996 1979 95 4 0 chr15 24122639 24122891 -77257630 + AluSq SINE Alu 61 313 0 3462 243 32 1 chr15 24122891 24124238 -77256283 + L1M4c LINE L1 2386 3955 -2427 189 0 0 0 chr15 24124379 24124400 -77256121 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 3073 181 8 2 chr15 24124769 24125305 -77255216 - L1PA16 LINE L1 -11 6155 5617 364 315 242 25 chr15 24125308 24126364 -77254157 - L2 LINE L2 -419 2895 1610 201 267 33 17 chr15 24126464 24126524 -77253997 - L2 LINE L2 -1877 1437 1377 2188 131 0 0 chr15 24126941 24127238 -77253283 - AluSx SINE Alu -15 297 1 193 243 114 0 chr15 24127961 24128031 -77252490 - MER5A DNA MER1_type -84 105 28 195 258 45 61 chr15 24128704 24128770 -77251751 - MIR SINE MIR -180 82 18 261 388 23 9 chr15 24130277 24130496 -77250025 + HERV16 LTR ERVL 1258 1479 -3517 615 332 60 17 chr15 24130630 24131049 -77249472 + HERV16 LTR ERVL 1785 2221 -3543 1262 335 28 19 chr15 24131177 24131791 -77248730 + HERV16 LTR ERVL 2984 3602 -2162 329 315 45 0 chr15 24134608 24134697 -77245824 + MIR3 SINE MIR 111 203 -5 628 190 22 0 chr15 24135195 24135332 -77245189 - L1MA10 LINE L1 0 6334 6195 736 242 41 0 chr15 24135342 24135536 -77244985 - L1M4 LINE L1 -538 5636 5435 2279 151 12 24 chr15 24135536 24135947 -77244574 - L1MB3 LINE L1 -1 6182 5777 269 214 66 88 chr15 24185981 24186163 -77194358 + LTR8A LTR ERV1 497 674 -53 816 251 39 39 chr15 24187201 24187500 -77193021 + MER46C DNA MER2_type 1 299 -39 346 48 0 0 chr15 24187500 24187542 -77192979 + MER39B LTR ERV1 4 45 -608 325 172 0 0 chr15 24187542 24187600 -77192921 + MER57B LTR ERV1 1 58 -376 1875 90 4 0 chr15 24187700 24187934 -77192587 + AluSp SINE Alu 63 297 -16 2178 211 14 53 chr15 24187934 24188415 -77192106 - L1ME1 LINE L1 -312 5854 5397 2392 117 0 0 chr15 24188415 24188723 -77191798 - AluSx SINE Alu -4 308 1 2178 211 14 53 chr15 24188723 24188804 -77191717 - L1ME1 LINE L1 -769 5397 5314 602 255 25 12 chr15 24188816 24189059 -77191462 + L1M4 LINE L1 3090 3335 -2811 1764 268 47 38 chr15 24189074 24189608 -77190913 - MLT1E2 LTR MaLR -68 558 20 447 281 0 0 chr15 24189617 24189738 -77190783 - L1ME1 LINE L1 -1564 4582 4462 2658 221 30 25 chr15 24189739 24191024 -77189497 + L1ME1 LINE L1 4601 5893 -273 279 114 0 0 chr15 24191136 24191180 -77189341 + (CA)n Simple_repeat Simple_repeat 1 44 0 821 85 78 8 chr15 24191180 24191309 -77189212 + L1MA9 LINE L1 5793 5930 -382 303 280 5 0 chr15 24194360 24194562 -77185959 + (CA)n Simple_repeat Simple_repeat 1 203 0 381 305 6 0 chr15 24194580 24194757 -77185764 + (CA)n Simple_repeat Simple_repeat 2 179 0 186 43 0 0 chr15 24195027 24195050 -77185471 + (CAGCT)n Simple_repeat Simple_repeat 2 24 0 802 222 116 81 chr15 24195352 24195722 -77184799 - MLT1D LTR MaLR -122 383 1 413 305 53 0 chr15 24195887 24196038 -77184483 + MIR SINE MIR 69 227 -35 2249 81 28 3 chr15 24197337 24197622 -77182899 + AluSg SINE Alu 1 292 -18 336 191 15 0 chr15 24197933 24198001 -77182520 - L2 LINE L2 -16 3297 3229 4806 59 2 7 chr15 24198051 24198645 -77181876 + LTR10C LTR ERV1 1 591 0 979 232 35 48 chr15 24199214 24199297 -77181224 + L1M4 LINE L1 2676 2759 -3387 1974 141 0 0 chr15 24199297 24199574 -77180947 + AluSx SINE Alu 3 279 -33 396 0 0 0 chr15 24199574 24199618 -77180903 + (CA)n Simple_repeat Simple_repeat 1 44 0 979 232 35 48 chr15 24199618 24199908 -77180613 + L1M4 LINE L1 2757 3045 -3101 * 2493 223 81 59 chr15 24199902 24200952 -77179569 + L1M4 LINE L1 3802 4874 -1272 2335 77 10 13 chr15 24201706 24202028 -77178493 - AluSq SINE Alu 0 321 1 1395 232 72 79 chr15 24202907 24203726 -77176795 + L1MB7 LINE L1 620 5652 -992 416 167 15 83 chr15 24203727 24203859 -77176662 + L1MB5 LINE L1 5955 6077 -107 1460 209 28 33 chr15 24203859 24204252 -77176269 - LTR7 LTR ERV1 0 450 60 360 160 0 27 chr15 24204282 24204357 -77176164 + L1MB4 LINE L1 6096 6168 -12 286 124 11 56 chr15 24204370 24204459 -77176062 + (CATATA)n Simple_repeat Simple_repeat 2 86 0 215 374 9 9 chr15 24205943 24206050 -77174471 - MIR SINE MIR -77 131 25 224 238 48 32 chr15 24206962 24207025 -77173496 - MIR SINE MIR -32 230 167 2230 259 47 29 chr15 24207506 24208369 -77172152 - L1ME3A LINE L1 -199 5971 5089 398 143 11 66 chr15 24209848 24209939 -77170582 - L1ME LINE L1 -705 5459 5374 2900 216 41 33 chr15 24212261 24213086 -77167435 + L1MB7 LINE L1 5851 6682 0 312 120 0 0 chr15 24213215 24213265 -77167256 + (TTATA)n Simple_repeat Simple_repeat 4 53 0 5017 138 65 32 chr15 24213508 24213996 -77166525 + MER4D LTR ERV1 1 532 -371 618 24 0 24 chr15 24213996 24214078 -77166443 + L1PA2 LINE L1 6076 6155 0 5017 138 65 32 chr15 24214078 24214463 -77166058 + MER4D LTR ERV1 532 903 0 3795 141 10 7 chr15 24214588 24215184 -77165337 + LTR8A LTR ERV1 1 598 -129 2216 171 30 2 chr15 24215287 24215713 -77164808 - L1P LINE L1 -2892 3254 2817 992 274 31 26 chr15 24215771 24216223 -77164298 - L1ME LINE L1 -5070 1000 547 532 268 100 52 chr15 24216475 24216934 -77163587 - L1ME LINE L1 -5587 483 3 21 0 0 0 chr15 24216988 24217009 -77163512 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr15 24217478 24217507 -77163014 + AT_rich Low_complexity Low_complexity 1 29 0 1754 169 23 10 chr15 24217620 24217922 -77162599 + AluJb SINE Alu 2 307 -5 570 260 104 89 chr15 24219261 24219764 -77160757 - L2 LINE L2 -22 3291 2758 902 217 82 25 chr15 24220253 24220397 -77160124 + L1MDb LINE L1 9 174 -6235 2524 87 25 33 chr15 24220397 24220764 -77159757 + THE1B LTR MaLR 1 364 0 902 217 82 25 chr15 24220764 24220863 -77159658 + L1MDb LINE L1 174 266 -6143 524 147 0 74 chr15 24221100 24221195 -77159326 + THE1B LTR MaLR 277 364 0 2770 210 74 7 chr15 24221552 24222157 -77158364 + L1MDb LINE L1 569 1214 -5195 185 179 0 54 chr15 24222248 24222304 -77158217 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 212 323 20 40 chr15 24222460 24222559 -77157962 - L2 LINE L2 -157 3115 3019 189 258 32 65 chr15 24223333 24223426 -77157095 + MIR SINE MIR 42 131 -77 328 171 48 4 chr15 24223448 24223530 -77156991 - MLT1A1 LTR MaLR -73 301 227 2739 201 51 48 chr15 24223538 24224247 -77156274 + L1MDb LINE L1 1200 1914 -4492 2320 101 3 0 chr15 24224247 24224544 -77155977 + AluSc SINE Alu 1 298 -11 2739 201 51 48 chr15 24224544 24224672 -77155849 + L1MDb LINE L1 1914 2040 -4366 723 233 84 32 chr15 24224678 24224927 -77155594 + L1MDb LINE L1 2101 2362 -4044 1138 227 97 25 chr15 24224929 24225250 -77155271 + MER2 DNA MER2_type 1 344 -1 3396 271 28 9 chr15 24225252 24226596 -77153925 + L1MDb LINE L1 2363 3787 -2619 5739 93 94 29 chr15 24226603 24227689 -77152832 + MER11A LTR ERVK 1 1261 -5 598 193 29 71 chr15 24228085 24228302 -77152219 - BSR/Beta Satellite Satellite -8 207 1 595 239 8 38 chr15 24228321 24228729 -77151792 - BSR/Beta Satellite Satellite -4 395 1 401 80 0 0 chr15 24228730 24228780 -77151741 + THE1B LTR MaLR 315 364 0 2964 66 8 0 chr15 24228780 24229158 -77151363 + THE1B-int LTR MaLR 1 381 -1199 8161 86 15 85 chr15 24230154 24230405 -77150116 + THE1B-int LTR MaLR 367 634 -946 2314 97 0 0 chr15 24230405 24230704 -77149817 + AluY SINE Alu 1 299 -12 8161 86 15 85 chr15 24230704 24231750 -77148771 + THE1B-int LTR MaLR 634 1574 -6 2336 138 36 20 chr15 24231755 24232111 -77148410 + THE1B LTR MaLR 1 362 -2 1357 213 94 3 chr15 24232360 24232680 -77147841 + L1MDb LINE L1 3805 4153 -2253 542 222 194 0 chr15 24232681 24232825 -77147696 + MLT1D LTR MaLR 334 505 0 518 231 0 0 chr15 24232825 24232932 -77147589 + MLT1D LTR MaLR 75 181 -324 790 342 75 37 chr15 24233099 24233519 -77147002 + ERVL LTR ERVL 4516 4979 -785 4208 109 45 5 chr15 24233519 24234098 -77146423 + LTR43 LTR ERV1 1 602 0 790 342 75 37 chr15 24234098 24234435 -77146086 + ERVL LTR ERVL 4979 5302 -462 316 263 91 10 chr15 24234822 24234921 -77145600 + LTR33 LTR ERVL 102 208 -313 245 276 60 26 chr15 24235127 24235243 -77145278 + L1ME LINE L1 5690 5809 -312 241 128 0 0 chr15 24236979 24237026 -77143495 - Alu SINE Alu -1 299 253 2475 83 0 0 chr15 24238374 24238675 -77141846 + AluSx SINE Alu 1 301 -11 1662 123 8 11 chr15 24239541 24239809 -77140712 + L1MA4 LINE L1 6018 6284 -16 327 272 158 38 chr15 24240085 24240269 -77140252 + HAL1b LINE L1 311 516 -832 1995 148 51 21 chr15 24240269 24240642 -77139879 - MSTB1 LTR MaLR -48 384 1 1296 274 60 49 chr15 24240795 24241791 -77138730 + L1MDb LINE L1 3162 4168 -2238 283 258 0 86 chr15 24241900 24242028 -77138493 + L1MDb LINE L1 4212 4328 -2078 2286 204 58 49 chr15 24242034 24242588 -77137933 - MER68 LTR ERV1 0 562 4 2475 279 81 32 chr15 24242620 24244229 -77136292 + L1MDb LINE L1 4556 5492 -914 2254 110 7 3 chr15 24244229 24244538 -77135983 + AluSg SINE Alu 1 310 0 2475 279 81 32 chr15 24244538 24244707 -77135814 + L1MDb LINE L1 5492 5651 -755 354 88 53 0 chr15 24244712 24244769 -77135752 - MSTB1 LTR MaLR -2 430 371 1243 166 45 14 chr15 24244769 24244992 -77135529 + AluJb SINE Alu 82 311 -1 2030 142 49 30 chr15 24244993 24245359 -77135162 - MSTB1 LTR MaLR -59 373 1 4876 229 87 50 chr15 24245372 24246894 -77133627 + L1MC4a LINE L1 6489 8067 -1 432 232 20 10 chr15 24247018 24247117 -77133404 - L1MEd LINE L1 -5366 753 654 9002 183 34 13 chr15 24247324 24247354 -77133167 + L1PA15 LINE L1 3653 3681 -2484 561 68 0 0 chr15 24247354 24247428 -77133093 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 9002 183 34 13 chr15 24247428 24249848 -77130673 + L1PA15 LINE L1 3681 6165 0 523 343 53 20 chr15 24250686 24250931 -77129590 - MIR SINE MIR 0 262 10 4491 137 3 13 chr15 24252493 24253181 -77127340 + L1MC1 LINE L1 5636 6316 -17 522 211 0 0 chr15 24253192 24253287 -77127234 + L1M4b LINE L1 1042 1136 -5723 * 877 236 31 49 chr15 24253273 24253631 -77126890 + L1M4b LINE L1 2869 3219 -3738 1674 255 63 74 chr15 24253694 24254751 -77125770 + L1M4c LINE L1 766 1811 -4573 210 37 0 0 chr15 24254751 24254778 -77125743 + (CA)n Simple_repeat Simple_repeat 2 28 0 930 176 7 0 chr15 24254781 24254934 -77125587 - Tigger2 DNA MER2_type -4 2714 2561 1331 168 4 9 chr15 24254936 24255162 -77125359 - AluJb SINE Alu -16 296 72 738 99 0 0 chr15 24255163 24255274 -77125247 - Tigger2 DNA MER2_type -147 2571 2461 3397 149 53 0 chr15 24255328 24255891 -77124630 - Tigger2 DNA MER2_type -1961 757 165 297 68 0 0 chr15 24255911 24255955 -77124566 + (TG)n Simple_repeat Simple_repeat 2 45 0 5666 123 21 13 chr15 24256035 24257437 -77123084 - L1PA13 LINE L1 -4 6159 4795 1113 133 12 6 chr15 24257438 24257611 -77122910 - Tigger2 DNA MER2_type -2544 174 1 381 304 60 36 chr15 24257615 24258103 -77122418 + L1M4c LINE L1 1990 2437 -3947 2403 232 29 9 chr15 24258115 24258780 -77121741 + L1M4c LINE L1 2524 3201 -3181 439 279 44 33 chr15 24259552 24259805 -77120716 - L1MA10 LINE L1 0 6321 5915 1651 138 57 40 chr15 24259831 24260129 -77120392 - AluSx SINE Alu -5 307 5 659 89 50 0 chr15 24260227 24260328 -77120193 + AluSp SINE Alu 2 107 -206 3794 142 30 2 chr15 24260502 24260542 -77119979 + MER39B LTR ERV1 6 43 -610 3152 111 9 2 chr15 24260542 24260973 -77119548 + MER57B LTR ERV1 1 434 0 3794 142 30 2 chr15 24260973 24261559 -77118962 + MER39B LTR ERV1 43 650 -3 528 295 18 26 chr15 24262514 24262741 -77117780 + L1MD2 LINE L1 5487 5711 -455 2022 133 13 3 chr15 24262752 24263060 -77117461 - AluJb SINE Alu -1 311 1 908 266 117 5 chr15 24263064 24263389 -77117132 + L1MD2 LINE L1 5819 6166 0 218 292 14 0 chr15 24263554 24263626 -77116895 + (CATAT)n Simple_repeat Simple_repeat 3 75 0 2120 127 0 10 chr15 24263675 24263974 -77116547 + AluSx SINE Alu 1 296 -16 1965 150 6 13 chr15 24266961 24267274 -77113247 - AluSx SINE Alu 0 312 2 2530 97 26 3 chr15 24268054 24268406 -77112115 - L1PB1 LINE L1 0 6151 5792 420 20 0 0 chr15 24268406 24268455 -77112066 + (CA)n Simple_repeat Simple_repeat 1 49 0 406 143 0 39 chr15 24269989 24270066 -77110455 + AluJ/FLAM SINE Alu 18 91 -211 2290 99 3 0 chr15 24270361 24270655 -77109866 + AluSp SINE Alu 1 295 -18 186 250 73 0 chr15 24270696 24270764 -77109757 + MIR SINE MIR 67 139 -69 2226 52 0 0 chr15 24272236 24272505 -77108016 + L1PA5 LINE L1 5883 6151 -3 357 43 0 0 chr15 24274887 24274934 -77105587 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 2051 119 0 11 chr15 24274936 24275221 -77105300 + AluSx SINE Alu 20 301 -11 7346 44 6 0 chr15 24275221 24276244 -77104277 + L1PA7 LINE L1 5114 6141 -13 186 71 0 0 chr15 24276248 24276276 -77104245 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 38 39 0 0 chr15 24276276 24276328 -77104193 + AT_rich Low_complexity Low_complexity 1 52 0 225 98 59 20 chr15 24276397 24276448 -77104073 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 393 241 0 0 chr15 24276835 24276918 -77103603 + L1MEc LINE L1 1943 2025 -4371 3955 248 83 22 chr15 24276921 24278629 -77101892 + L1MEc LINE L1 2060 3823 -2392 328 172 0 17 chr15 24278935 24278993 -77101528 + MLT1I LTR MaLR 346 402 -7 194 274 27 14 chr15 24279006 24279079 -77101442 + MER5A DNA MER1_type 82 155 -34 2201 109 0 3 chr15 24280249 24280575 -77099946 - AluSx SINE Alu 0 325 1 248 250 66 0 chr15 24280580 24280656 -77099865 - L1M LINE L1 -772 5394 5314 584 255 26 13 chr15 24280668 24280899 -77099622 + L1M4 LINE L1 3090 3323 -2823 2359 71 20 3 chr15 24281442 24281738 -77098783 + AluY SINE Alu 3 303 -8 708 204 70 50 chr15 24283510 24283711 -77096810 - ORSL DNA AcHobo -41 234 30 22 0 0 0 chr15 24284632 24284654 -77095867 + AT_rich Low_complexity Low_complexity 1 22 0 5889 150 17 21 chr15 24286560 24287554 -77092967 - L1PB3 LINE L1 -2 6152 5155 558 0 0 0 chr15 24287554 24287616 -77092905 + (TTTTA)n Simple_repeat Simple_repeat 2 63 0 2106 106 0 14 chr15 24287619 24287903 -77092618 - AluSx SINE Alu -32 280 1 5889 150 17 21 chr15 24287903 24288941 -77091580 - L1PB3 LINE L1 -1001 5153 4125 2061 132 0 4 chr15 24289218 24289498 -77091023 + AluSx SINE Alu 1 279 -33 6729 232 57 23 chr15 24290119 24292125 -77088396 - L1MEc LINE L1 -1092 5123 3050 624 248 33 26 chr15 24292149 24292302 -77088219 + MER58A DNA MER1_type 71 224 0 239 180 0 0 chr15 24292312 24292362 -77088159 - L1MEc LINE L1 -3170 3045 2996 1593 182 29 66 chr15 24292362 24292742 -77087779 + MLT1A2 LTR MaLR 1 366 -8 1958 232 80 5 chr15 24292750 24293388 -77087133 - L1MEc LINE L1 -3215 3000 2356 2160 108 10 3 chr15 24293424 24293719 -77086802 - AluSq SINE Alu -16 297 1 339 219 0 0 chr15 24293764 24293828 -77086693 + Tigger5 DNA MER2_type 1 64 -2259 1491 128 21 4 chr15 24293847 24294081 -77086440 + Tigger5 DNA MER2_type 2085 2322 -1 5596 250 58 73 chr15 24294090 24294434 -77086087 - L1MEc LINE L1 -4070 2326 1978 1896 132 0 51 chr15 24294434 24294745 -77085776 - AluY SINE Alu -15 296 2 5596 250 58 73 chr15 24294745 24295010 -77085511 - L1MEc LINE L1 -4418 1978 1710 2395 73 0 13 chr15 24295010 24295311 -77085210 - AluY SINE Alu -14 297 1 5596 250 58 73 chr15 24295311 24297025 -77083496 - L1MEc LINE L1 -4686 1710 38 669 237 63 5 chr15 24298875 24299065 -77081456 - L1MA4 LINE L1 -14 6286 6086 1601 59 0 0 chr15 24299437 24299646 -77080875 - AluSg/x SINE Alu 0 306 98 2189 125 0 0 chr15 24300580 24300875 -77079646 - AluSg SINE Alu -15 295 1 229 279 73 50 chr15 24301734 24301913 -77078608 - MIR SINE MIR -22 240 58 219 205 0 164 chr15 24302256 24302322 -77078199 + MIR SINE MIR 30 71 -137 2322 67 3 33 chr15 24302322 24302622 -77077899 + AluY SINE Alu 1 291 -20 219 205 0 164 chr15 24302622 24302678 -77077843 + MIR SINE MIR 71 135 -73 2051 161 29 5 chr15 24303190 24303569 -77076952 + MLT1B LTR MaLR 3 390 0 1493 197 100 3 chr15 24306130 24306605 -77073916 + L1MC4 LINE L1 5498 5782 -384 920 229 103 10 chr15 24306410 24306712 -77073809 + L1MB7 LINE L1 5846 6175 -9 * 2233 105 3 0 chr15 24307085 24307379 -77073142 - AluSx SINE Alu -17 295 1 1902 163 0 3 chr15 24307820 24308120 -77072401 + AluSx SINE Alu 1 299 -13 389 314 70 13 chr15 24308171 24308400 -77072121 - MIR SINE MIR 0 262 21 226 292 45 0 chr15 24308387 24308476 -77072045 + MIR3 SINE MIR 94 186 -22 * 2044 102 74 34 chr15 24309057 24309381 -77071140 + MER1B DNA MER1_type 1 337 0 3634 200 56 122 chr15 24309897 24310373 -77070148 + L1M2 LINE L1 2296 2802 -3344 1743 184 14 3 chr15 24310373 24310656 -77069865 - AluJo SINE Alu -20 292 7 3634 200 56 122 chr15 24310656 24310786 -77069735 + L1M2 LINE L1 2802 2939 -3207 2306 114 0 0 chr15 24310786 24311083 -77069438 - AluSg SINE Alu -13 297 1 3634 200 56 122 chr15 24311083 24311973 -77068548 + L1M2 LINE L1 2939 3695 -2451 861 156 4 24 chr15 24311973 24312218 -77068303 + GA-rich Low_complexity Low_complexity 1 240 0 292 141 13 103 chr15 24312218 24312296 -77068225 + L1P LINE L1 3673 3743 -2403 * 6443 20 0 0 chr15 24312294 24313031 -77067490 - L1PA3 LINE L1 -1137 5009 4273 7918 23 0 0 chr15 24313034 24314181 -77066340 + L1PA3 LINE L1 5005 6151 -4 8773 167 17 11 chr15 24314183 24316202 -77064319 + L1M2 LINE L1 3736 5764 -548 814 144 92 0 chr15 24316373 24316547 -77063974 - L1MEc LINE L1 -4204 2192 2003 415 226 168 15 chr15 24316645 24316851 -77063670 - L1MEc LINE L1 -4421 1975 1744 826 273 93 22 chr15 24317474 24317925 -77062596 - LTR33 LTR ERVL -2 519 37 414 285 111 12 chr15 24318456 24318628 -77061893 - MER5A DNA MER1_type 0 189 1 4176 209 66 13 chr15 24318860 24319998 -77060523 + L1MB4 LINE L1 3964 5040 -1140 1896 172 14 0 chr15 24319998 24320294 -77060227 + AluJb SINE Alu 1 300 -12 4176 209 66 13 chr15 24320294 24321257 -77059264 + L1MB4 LINE L1 5040 6179 -1 1977 151 3 20 chr15 24321272 24321576 -77058945 + AluJo SINE Alu 1 299 -13 2028 89 7 15 chr15 24321589 24321858 -77058663 + AluSx SINE Alu 39 305 -7 2108 117 11 0 chr15 24322558 24322865 -77057656 - AluSp SINE Alu 0 310 1 849 163 0 33 chr15 24322872 24323025 -77057496 - FAM SINE Alu 0 49 1 339 222 23 34 chr15 24325291 24325467 -77055054 + (TATATG)n Simple_repeat Simple_repeat 6 179 0 304 211 56 14 chr15 24325475 24325546 -77054975 + L1MCa LINE L1 1995 2068 -4358 187 221 13 26 chr15 24325565 24325642 -77054879 + (TATG)n Simple_repeat Simple_repeat 4 79 0 2356 109 27 29 chr15 24326014 24326390 -77054131 - THE1C LTR MaLR 0 375 1 180 217 150 0 chr15 24328946 24329006 -77051515 - L2 LINE L2 -36 3236 3168 900 181 19 0 chr15 24330699 24330854 -77049667 + FRAM SINE Alu 1 151 -25 1520 264 59 22 chr15 24331838 24332379 -77048142 + L1M4 LINE L1 1 561 -5981 948 238 88 11 chr15 24332381 24332642 -77047879 + L1M4 LINE L1 587 867 -5675 678 165 0 0 chr15 24332744 24332853 -77047668 + FRAM SINE Alu 63 171 -5 381 232 130 72 chr15 24332854 24332992 -77047529 + L1MC/D LINE L1 4986 5131 -1015 2130 130 3 7 chr15 24332995 24333294 -77047227 + AluSx SINE Alu 1 298 -14 243 100 25 0 chr15 24333294 24333334 -77047187 + Alu SINE Alu 1 41 -262 815 195 31 22 chr15 24333344 24333619 -77046902 + L1MC/D LINE L1 5188 5464 -743 246 47 0 70 chr15 24333920 24333963 -77046558 + LTR10C LTR ERV1 112 151 -440 433 240 79 104 chr15 24334715 24335069 -77045452 + MER68 LTR ERV1 68 412 -150 184 252 15 114 chr15 24335730 24335861 -77044660 - MIR SINE MIR -80 182 65 1518 198 106 25 chr15 24336748 24337107 -77043414 + MLT1B LTR MaLR 3 390 0 303 269 10 10 chr15 24337700 24337804 -77042717 - MER69 DNA AcHobo -1 2525 2422 1707 166 3 14 chr15 24337856 24338145 -77042376 + AluJo SINE Alu 3 288 -24 29 0 0 0 chr15 24338150 24338179 -77042342 + AT_rich Low_complexity Low_complexity 1 29 0 385 273 128 14 chr15 24340190 24340467 -77040054 + MER39 LTR ERV1 397 538 -4 228 188 24 35 chr15 24340564 24340649 -77039872 + GA-rich Low_complexity Low_complexity 3 86 0 270 301 29 19 chr15 24342867 24342970 -77037551 + L1ME3A LINE L1 320 423 -5702 428 270 51 15 chr15 24343255 24343451 -77037070 + L1M4 LINE L1 844 1046 -5080 269 258 11 65 chr15 24345158 24345344 -77035177 + (CA)n Simple_repeat Simple_repeat 1 176 0 182 269 167 0 chr15 24345366 24345444 -77035077 - L2 LINE L2 -3 3310 3220 269 286 92 0 chr15 24347079 24347177 -77033344 + L2 LINE L2 3202 3308 -5 2289 116 0 0 chr15 24350037 24350338 -77030183 - AluSx SINE Alu -2 310 10 852 140 129 0 chr15 24350834 24351005 -77029516 + MER3 DNA MER1_type 1 193 -16 2865 117 144 14 chr15 24352138 24352700 -77027821 + LTR24C LTR ERV1 1 635 0 1008 106 35 0 chr15 24352961 24353131 -77027390 - MER20 DNA MER1_type 0 219 44 2403 82 3 31 chr15 24353866 24354185 -77026336 + AluSg SINE Alu 1 310 0 1391 180 73 38 chr15 24355377 24355666 -77024855 + AluJo SINE Alu 1 299 -13 1761 175 3 7 chr15 24355856 24356148 -77024373 + AluJb SINE Alu 1 291 -21 705 284 25 80 chr15 24357200 24357689 -77022832 - L1ME4a LINE L1 -47 6074 5613 351 243 69 28 chr15 24358966 24359110 -77021411 - MIR SINE MIR 0 262 113 258 165 46 9 chr15 24359358 24359467 -77021054 + CT-rich Low_complexity Low_complexity 2 114 0 263 250 0 0 chr15 24360044 24360104 -77020417 + L1ME3A LINE L1 650 709 -5833 7595 215 36 37 chr15 24360158 24360936 -77019585 + L1ME3A LINE L1 2626 3403 -3241 1938 162 7 76 chr15 24360936 24361116 -77019405 + MLT1B LTR MaLR 1 192 -198 2332 112 3 0 chr15 24361116 24361421 -77019100 + AluSg SINE Alu 1 306 -4 1938 162 7 76 chr15 24361421 24361659 -77018862 + MLT1B LTR MaLR 192 390 0 7595 215 36 37 chr15 24361659 24363060 -77017461 + L1ME3A LINE L1 3403 4815 -1829 573 232 58 0 chr15 24363060 24363215 -77017306 + L1ME3A LINE L1 6277 6440 -228 1996 132 0 44 chr15 24363706 24364044 -77016477 + AluSx SINE Alu 1 325 0 1277 234 40 66 chr15 24365934 24366493 -77014028 - L1MEc LINE L1 -3547 2668 2154 1993 73 4 0 chr15 24566493 24566738 -76813783 - AluSc SINE Alu -63 246 1 32 26 0 0 chr15 24566748 24566787 -76813734 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr15 24566947 24566968 -76813553 + AT_rich Low_complexity Low_complexity 1 21 0 633 214 30 40 chr15 24566969 24567170 -76813351 + L1MC5 LINE L1 6977 7175 -786 405 299 47 16 chr15 24567180 24567307 -76813214 + MER5B DNA MER1_type 48 178 0 279 304 54 20 chr15 24567398 24567546 -76812975 + L2 LINE L2 2942 3094 -178 500 271 47 10 chr15 24567637 24567829 -76812692 - L1ME1 LINE L1 -114 5986 5788 2416 86 7 0 chr15 24567969 24568270 -76812251 + AluSp SINE Alu 1 303 -10 2475 157 26 28 chr15 24569788 24570214 -76810307 + MSTB LTR MaLR 1 425 -1 2247 154 24 0 chr15 24570317 24570700 -76809821 - L1MB3 LINE L1 0 6183 5792 207 0 0 0 chr15 24572030 24572053 -76808468 + (CA)n Simple_repeat Simple_repeat 1 23 0 180 0 0 0 chr15 24573327 24573347 -76807174 + (CAT)n Simple_repeat Simple_repeat 3 22 0 185 284 172 9 chr15 24576892 24577008 -76803513 + MIR SINE MIR 94 228 -34 925 198 36 5 chr15 24577446 24577638 -76802883 + MER82 DNA MER2_type 7 204 -449 1569 211 111 13 chr15 24577879 24578008 -76802513 + MER82 DNA MER2_type 227 342 -311 189 0 0 0 chr15 24578008 24578029 -76802492 + (CA)n Simple_repeat Simple_repeat 2 22 0 1569 211 111 13 chr15 24578029 24578288 -76802233 + MER82 DNA MER2_type 342 653 0 2205 131 0 3 chr15 24578711 24579016 -76801505 - AluSx SINE Alu -8 304 1 387 315 106 63 chr15 24579390 24579835 -76800686 + L1ME4a LINE L1 5639 6102 -19 401 179 12 0 chr15 24580565 24580649 -76799872 + GA-rich Low_complexity Low_complexity 1 85 0 1314 267 103 20 chr15 24580751 24581299 -76799222 - L1ME1 LINE L1 -298 5806 5165 2382 74 3 3 chr15 24581299 24581597 -76798924 - AluY SINE Alu -13 298 1 1314 267 103 20 chr15 24581597 24581784 -76798737 - L1ME1 LINE L1 -939 5165 4995 783 263 54 81 chr15 24581811 24581882 -76798639 - L1ME1 LINE L1 -3107 2973 2902 2658 146 50 7 chr15 24581882 24582342 -76798179 - L1MB2 LINE L1 -2 6169 5690 783 263 54 81 chr15 24582342 24583015 -76797506 - L1ME1 LINE L1 -3178 2902 2249 2965 185 189 6 chr15 24583017 24583740 -76796781 - L1MC3 LINE L1 -12 7773 6918 260 310 49 28 chr15 24584026 24584168 -76796353 - L1ME1 LINE L1 -5924 146 2 2425 74 0 10 chr15 24584309 24584618 -76795903 - AluY SINE Alu -5 306 1 713 336 109 41 chr15 24585068 24585487 -76795034 - L3 LINE CR1 -861 716 258 663 201 141 5 chr15 24585487 24585671 -76794850 - MER3 DNA MER1_type 0 209 1 713 336 109 41 chr15 24585671 24585736 -76794785 - L3 LINE CR1 -1319 258 199 1118 126 12 18 chr15 24585741 24585908 -76794613 - FRAM SINE Alu -9 167 2 2233 92 0 0 chr15 24587015 24587326 -76793195 + AluSc SINE Alu 1 311 0 250 268 18 36 chr15 24587821 24587933 -76792588 + CT-rich Low_complexity Low_complexity 3 112 0 484 282 49 69 chr15 24588268 24588425 -76792096 - HAL1 LINE L1 -1192 1315 1156 1846 110 110 11 chr15 24588425 24588706 -76791815 - AluSg SINE Alu 0 310 2 484 282 49 69 chr15 24588706 24589097 -76791424 - HAL1 LINE L1 -1351 1156 778 208 319 43 11 chr15 24589097 24589191 -76791330 + MER5B DNA MER1_type 23 119 -59 187 200 29 0 chr15 24589252 24589287 -76791234 - MER5B DNA MER1_type -134 44 9 408 225 7 63 chr15 24590704 24590846 -76789675 - L1MC4a LINE L1 -1973 5835 5702 243 326 7 0 chr15 24591038 24591176 -76789345 - L1P LINE L1 -726 5425 5287 24 0 0 0 chr15 24591528 24591552 -76788969 + AT_rich Low_complexity Low_complexity 1 24 0 2346 99 0 10 chr15 24591559 24591863 -76788658 + AluSq SINE Alu 1 301 -12 2095 71 4 0 chr15 24592281 24592533 -76787988 + AluSx SINE Alu 1 253 -59 3982 199 32 14 chr15 24592533 24593403 -76787118 - L1MA10 LINE L1 -39 6295 5410 21 71 0 0 chr15 24593824 24593866 -76786655 + AT_rich Low_complexity Low_complexity 1 42 0 582 316 28 43 chr15 24593874 24594438 -76786083 - L1M4 LINE L1 -1662 4484 3929 2339 116 3 0 chr15 24594453 24594764 -76785757 - AluSx SINE Alu 0 312 1 260 303 56 40 chr15 24594847 24594896 -76785625 - L1MC4 LINE L1 -99 7943 7896 2391 114 0 9 chr15 24594896 24595211 -76785310 - AluSx SINE Alu 0 312 1 260 303 56 40 chr15 24595211 24595412 -76785109 - L1MC4 LINE L1 -146 7896 7689 307 278 17 35 chr15 24596033 24596148 -76784373 - L1MC4a LINE L1 -391 7417 7305 2450 171 17 11 chr15 24596322 24596795 -76783726 - L1MB3 LINE L1 -233 5950 5475 536 304 84 4 chr15 24596854 24597081 -76783440 - MER119 DNA MER1_type -338 245 1 2277 62 0 117 chr15 24597487 24597839 -76782682 + AluY SINE Alu 1 311 0 635 299 21 0 chr15 24597897 24598091 -76782430 + L1MC5 LINE L1 6635 6832 -1129 678 216 40 109 chr15 24598137 24598466 -76782055 + L1MC5 LINE L1 6820 7125 -836 252 291 36 85 chr15 24598604 24598827 -76781694 + L1MC5 LINE L1 7316 7527 -434 2364 56 0 11 chr15 24598999 24599315 -76781206 - AluY SINE Alu 0 313 1 238 270 90 0 chr15 24600531 24600620 -76779901 - MLT1I LTR MaLR -243 166 70 2139 84 22 0 chr15 24602778 24603051 -76777470 - AluSx SINE Alu -14 298 20 2388 185 29 58 chr15 24603410 24603823 -76776698 + MLT1D LTR MaLR 1 397 -108 1941 170 3 3 chr15 24603823 24604135 -76776386 - AluJo SINE Alu 0 312 1 2388 185 29 58 chr15 24604135 24604241 -76776280 + MLT1D LTR MaLR 397 505 0 227 146 24 0 chr15 24606100 24606141 -76774380 + L2 LINE L2 3225 3266 -6 2060 141 0 0 chr15 24606728 24607025 -76773496 - AluJb SINE Alu -15 297 1 4951 201 36 16 chr15 24607038 24607603 -76772918 - L1MC3 LINE L1 -8 7777 7225 2497 85 3 0 chr15 24607603 24607909 -76772612 + AluY SINE Alu 1 307 -4 4951 201 36 16 chr15 24607909 24608258 -76772263 - L1MC3 LINE L1 -560 7225 6833 1942 174 21 6 chr15 24608258 24608597 -76771924 - MER2 DNA MER2_type 0 344 1 4951 201 36 16 chr15 24608597 24608829 -76771692 - L1MC3 LINE L1 -952 6833 6607 2311 113 7 0 chr15 24608836 24609137 -76771384 - AluSc SINE Alu -6 303 1 1277 133 6 0 chr15 24609137 24609318 -76771203 - AluSg/x SINE Alu -4 308 127 1419 202 0 8 chr15 24609538 24609795 -76770726 + AluJo SINE Alu 36 290 -22 255 335 112 22 chr15 24610039 24610218 -76770303 - MIR SINE MIR -48 214 20 1888 282 143 44 chr15 24610408 24611636 -76768885 + L2 LINE L2 1438 2786 -528 189 258 11 75 chr15 24611807 24611900 -76768621 + L2 LINE L2 3151 3237 -76 256 286 98 0 chr15 24611928 24612040 -76768481 + MER96 DNA MER1_type? 48 170 -5 302 299 9 9 chr15 24612394 24612501 -76768020 + MER112 DNA MER1_type 36 142 -118 314 328 24 16 chr15 24612592 24612717 -76767804 - MIR SINE MIR -62 146 21 290 233 33 22 chr15 24613171 24613261 -76767260 + MER5A DNA MER1_type 19 109 -80 24 32 0 0 chr15 24613779 24613810 -76766711 + AT_rich Low_complexity Low_complexity 1 31 0 3481 180 28 31 chr15 24613810 24614316 -76766205 - L1MB3 LINE L1 -7 6176 5673 2574 57 0 22 chr15 24614316 24614634 -76765887 - AluY SINE Alu 0 311 1 3481 180 28 31 chr15 24614634 24614927 -76765594 - L1MB3 LINE L1 -510 5673 5380 558 308 138 21 chr15 24615332 24615657 -76764864 + MLT1I LTR MaLR 47 409 0 2190 124 0 0 chr15 24616236 24616535 -76763986 - AluSc SINE Alu -2 307 9 2009 177 19 0 chr15 24616560 24616932 -76763589 + MLT1B LTR MaLR 12 390 0 187 239 90 30 chr15 24617001 24617068 -76763453 - L2 LINE L2 -51 3262 3192 1999 147 0 16 chr15 24617118 24617425 -76763096 + AluJb SINE Alu 1 302 -10 1903 164 3 10 chr15 24617435 24617733 -76762788 + AluJo SINE Alu 1 296 -16 255 271 27 59 chr15 24618554 24618682 -76761839 - MIR SINE MIR -37 171 48 635 254 11 16 chr15 24618849 24619034 -76761487 - L1MD2 LINE L1 -14 6739 6556 189 107 0 0 chr15 24619034 24619062 -76761459 + (TATG)n Simple_repeat Simple_repeat 4 31 0 513 243 95 7 chr15 24619064 24619212 -76761309 - L1MD2 LINE L1 -229 6524 6364 * 3445 210 28 38 chr15 24619204 24619638 -76760883 - L1MD2 LINE L1 -598 6155 5718 2335 80 0 0 chr15 24619638 24619937 -76760584 - AluSq SINE Alu -14 299 1 3445 210 28 38 chr15 24619937 24620991 -76759530 - L1MD2 LINE L1 -1035 5718 4674 2866 234 69 4 chr15 24620987 24622047 -76758474 - L1MD2 LINE L1 -3134 3406 2284 * 692 211 256 4 chr15 24622051 24622321 -76758200 - L1MD2 LINE L1 -4292 2248 1911 632 128 8 26 chr15 24622322 24622439 -76758082 - L1MB8 LINE L1 0 6178 6064 2391 78 0 0 chr15 24622580 24622887 -76757634 - AluY SINE Alu -4 307 1 22 35 0 0 chr15 24622893 24622922 -76757599 + AT_rich Low_complexity Low_complexity 1 29 0 3102 163 32 17 chr15 24622923 24623523 -76756998 - L1MB3 LINE L1 -2 6181 5573 229 303 46 0 chr15 24623566 24623675 -76756846 - L1MC5 LINE L1 -516 7445 7332 1048 217 14 0 chr15 24623782 24623994 -76756527 + MLT1B LTR MaLR 1 215 -175 653 213 0 0 chr15 24624138 24624260 -76756261 + FLAM_C SINE Alu 1 122 -11 942 9 0 0 chr15 24624278 24624385 -76756136 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 1990 103 14 0 chr15 24624387 24624677 -76755844 - AluSx SINE Alu -18 294 1 221 271 17 17 chr15 24625468 24625586 -76754935 + (TATAA)n Simple_repeat Simple_repeat 3 120 0 846 140 0 22 chr15 24625592 24625728 -76754793 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr15 24625957 24625978 -76754543 + AT_rich Low_complexity Low_complexity 1 21 0 607 280 84 108 chr15 24627210 24627839 -76752682 + HAL1b LINE L1 56 532 -816 3560 238 36 4 chr15 24627896 24628721 -76751800 + MER97a DNA MER1_type? 2 853 -41 441 339 24 51 chr15 24629051 24629515 -76751006 + L1MC/D LINE L1 2119 2536 -3679 263 267 74 48 chr15 24629675 24629986 -76750535 + L1MC/D LINE L1 2746 3064 -3151 546 307 76 57 chr15 24630030 24630398 -76750123 + L1MC/D LINE L1 3146 3520 -2695 357 342 26 0 chr15 24630405 24630522 -76749999 + L1MC/D LINE L1 3564 3683 -2532 318 264 88 65 chr15 24630616 24630957 -76749564 + L1MC/D LINE L1 4972 5320 -895 295 183 99 160 chr15 24630969 24631100 -76749421 + L1MC/D LINE L1 5483 5605 -2272 1168 309 82 35 chr15 24631382 24632207 -76748314 - L1M4 LINE L1 -1828 4318 3455 1300 195 123 9 chr15 24632291 24632609 -76747912 - MLT1A1 LTR MaLR -11 354 1 290 240 0 13 chr15 24633112 24633187 -76747334 + MIR SINE MIR 14 87 -175 201 247 76 101 chr15 24634903 24635061 -76745460 + MIR3 SINE MIR 23 176 -32 5823 171 43 1 chr15 24635423 24637361 -76743160 + L1PA16 LINE L1 4130 6157 -9 226 311 59 22 chr15 24637619 24637754 -76742767 - MLT1K LTR MaLR -81 507 368 234 0 0 0 chr15 24639142 24639168 -76741353 + (CCCTG)n Simple_repeat Simple_repeat 3 28 0 289 225 0 101 chr15 24639523 24639612 -76740909 - MIR SINE MIR -70 192 113 228 35 0 0 chr15 24640046 24640075 -76740446 + (TC)n Simple_repeat Simple_repeat 1 29 0 306 73 0 0 chr15 24640110 24640151 -76740370 + (TC)n Simple_repeat Simple_repeat 1 41 0 27 0 0 0 chr15 24641685 24641712 -76738809 + AT_rich Low_complexity Low_complexity 1 27 0 1435 130 138 8 chr15 24641712 24641966 -76738555 - AluSg1 SINE Alu -22 287 1 1851 153 91 18 chr15 24642008 24642348 -76738173 - MLT1A1 LTR MaLR 0 365 1 2446 170 118 26 chr15 24642425 24642924 -76737597 - MLT1F1 LTR MaLR -2 565 21 216 0 0 0 chr15 24642929 24642953 -76737568 + (TA)n Simple_repeat Simple_repeat 2 25 0 2077 113 3 13 chr15 24642955 24643256 -76737265 - AluSx SINE Alu -14 298 1 1124 265 54 62 chr15 24643399 24643468 -76737053 - L1ME3A LINE L1 -219 5951 5883 2166 96 0 0 chr15 24643468 24643759 -76736762 - AluSx SINE Alu -17 295 5 1124 265 54 62 chr15 24643759 24644354 -76736167 - L1ME3A LINE L1 -287 5883 5292 594 281 133 0 chr15 24644415 24644625 -76735896 + MIR SINE MIR 3 240 -22 1678 96 137 4 chr15 24645346 24645616 -76734905 + AluSq SINE Alu 2 307 -6 245 284 128 27 chr15 24649349 24649497 -76731024 - MIR SINE MIR -31 231 69 216 135 0 0 chr15 24653380 24653417 -76727104 + (T)n Simple_repeat Simple_repeat 1 37 0 320 299 51 26 chr15 24653656 24653773 -76726748 + L1ME LINE L1 66 185 -5934 362 337 155 47 chr15 24653815 24654066 -76726455 + L1ME LINE L1 4730 5037 -1092 2228 96 3 3 chr15 24654066 24654368 -76726153 + AluSx SINE Alu 2 303 -9 362 337 155 47 chr15 24654368 24654496 -76726025 + L1ME LINE L1 5037 5150 -979 440 274 125 0 chr15 24654498 24654666 -76725855 + L1ME LINE L1 5182 5370 -759 388 304 43 0 chr15 24654714 24654875 -76725646 + L1ME LINE L1 5448 5615 -538 341 202 30 71 chr15 24654878 24654898 -76725623 - MER112 DNA MER1_type -45 215 196 2103 176 60 56 chr15 24654898 24655416 -76725105 - MLT2B1 LTR ERVL 0 520 1 341 202 30 71 chr15 24655416 24655494 -76725027 - MER112 DNA MER1_type -64 196 121 1375 184 90 15 chr15 24655801 24656067 -76724454 - AluJb SINE Alu -12 290 5 220 298 0 18 chr15 24656319 24656376 -76724145 + L2 LINE L2 3200 3255 -17 1856 151 10 0 chr15 24656404 24656703 -76723818 - AluJb SINE Alu -2 310 9 497 243 53 13 chr15 24657233 24657385 -76723136 - MER103 DNA DNA -3 163 6 186 316 53 0 chr15 24657590 24657647 -76722874 + MIR SINE MIR 91 150 -58 248 314 81 0 chr15 24658620 24658706 -76721815 - MIR3 SINE MIR -45 163 71 944 265 72 46 chr15 24658794 24659167 -76721354 - MLT2C1 LTR ERVL -2 395 13 345 255 235 13 chr15 24659667 24659820 -76720701 + MER5A DNA MER1_type 3 189 0 393 245 151 69 chr15 24659836 24659876 -76720645 - MER5A DNA MER1_type -8 181 146 2199 105 0 0 chr15 24659876 24660180 -76720341 - AluSp SINE Alu -9 304 1 393 245 151 69 chr15 24660180 24660298 -76720223 - MER5A DNA MER1_type -43 146 10 439 250 27 27 chr15 24660345 24660457 -76720064 + MIR SINE MIR 39 150 -112 1620 181 0 3 chr15 24660462 24660754 -76719767 - AluJo SINE Alu -13 299 9 1940 113 3 3 chr15 24660782 24661086 -76719435 + AluSx SINE Alu 1 304 0 5476 194 43 20 chr15 24661105 24661671 -76718850 + L1MB3 LINE L1 3975 4527 -1656 2202 147 31 3 chr15 24661671 24662025 -76718496 - THE1B LTR MaLR 0 364 1 5476 194 43 20 chr15 24662025 24663608 -76716913 + L1MB3 LINE L1 4527 6176 -7 1147 181 76 24 chr15 24663682 24663931 -76716590 + AluJo SINE Alu 50 311 -1 486 285 48 5 chr15 24664597 24664783 -76715738 - L1ME3A LINE L1 -5 6165 5972 578 119 0 0 chr15 24664935 24665019 -76715502 + Alu SINE Alu 218 301 -10 811 292 144 41 chr15 24665248 24665671 -76714850 - L1MEc LINE L1 -2505 3710 3229 2253 74 10 7 chr15 24665671 24665981 -76714540 - AluY SINE Alu 0 311 1 811 292 144 41 chr15 24665981 24666043 -76714478 - L1MEc LINE L1 -2986 3229 3175 6573 83 11 7 chr15 24666066 24667389 -76713132 - L1PA10 LINE L1 0 6168 4850 376 259 36 84 chr15 24668185 24668256 -76712265 - LTR41 LTR ERVL -615 158 85 2339 80 0 10 chr15 24668256 24668559 -76711962 + AluY SINE Alu 1 325 0 186 0 40 0 chr15 24668559 24668584 -76711937 + (TAA)n Simple_repeat Simple_repeat 2 180 0 376 259 36 84 chr15 24668584 24668675 -76711846 - LTR41 LTR ERVL -688 85 1 405 39 0 0 chr15 24668800 24668851 -76711670 + (TG)n Simple_repeat Simple_repeat 2 52 0 623 308 67 27 chr15 24668966 24669310 -76711211 - L1MEc LINE L1 -3617 2598 2283 715 186 122 5 chr15 24669341 24669529 -76710992 - MLT1B LTR MaLR 0 390 181 925 91 8 0 chr15 24669557 24669678 -76710843 - AluSp/q SINE Alu -14 299 178 822 134 474 21 chr15 24669729 24669923 -76710598 - LTR12 LTR ERV1 -507 207 55 244 250 0 0 chr15 24669923 24669975 -76710546 - LTR30 LTR ERV1 -670 52 1 248 149 85 0 chr15 24670171 24670218 -76710303 + L2 LINE L2 3203 3253 -60 1992 189 36 5 chr15 24670265 24670657 -76709864 + MLT2D LTR ERVL 3 406 -8 833 242 63 62 chr15 24671527 24671765 -76708756 - MER77 LTR ERV1 -3 602 454 2586 60 0 16 chr15 24671765 24672080 -76708441 + AluY SINE Alu 1 310 -1 833 242 63 62 chr15 24672080 24672259 -76708262 - MER77 LTR ERV1 -151 454 277 320 263 94 60 chr15 24672283 24672548 -76707973 - MER21B LTR ERV1 -400 205 57 771 196 67 11 chr15 24672801 24672980 -76707541 - MER5A DNA MER1_type 0 189 1 485 227 117 19 chr15 24673775 24673929 -76706592 + MER5A DNA MER1_type 1 169 -20 22 70 0 0 chr15 24674308 24674351 -76706170 + AT_rich Low_complexity Low_complexity 1 43 0 1896 190 0 0 chr15 24674827 24675127 -76705394 + AluJb SINE Alu 1 300 -12 208 247 0 14 chr15 24675136 24675209 -76705312 + A-rich Low_complexity Low_complexity 3 74 0 1547 192 95 24 chr15 24675739 24676109 -76704412 - MSTD LTR MaLR 0 396 1 2427 105 0 0 chr15 24676755 24677060 -76703461 - AluSg SINE Alu -4 306 2 414 0 0 0 chr15 24677188 24677234 -76703287 + (TG)n Simple_repeat Simple_repeat 2 47 0 414 267 109 48 chr15 24677548 24677713 -76702808 - MER5B DNA MER1_type -1 177 3 592 231 105 31 chr15 24678934 24679262 -76701259 + L1MCc LINE L1 1354 1874 -4961 * 765 221 76 42 chr15 24679235 24679268 -76701253 + L1M4 LINE L1 5143 5173 -1768 1770 162 43 16 chr15 24679268 24679385 -76701136 + AluJb SINE Alu 1 113 -199 195 42 0 0 chr15 24679385 24679409 -76701112 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1770 162 43 16 chr15 24679409 24679594 -76700927 + AluJb SINE Alu 113 311 -1 765 221 76 42 chr15 24679594 24679890 -76700631 + L1M4 LINE L1 5173 5483 -1458 1847 154 104 82 chr15 24680006 24680363 -76700158 - MLT1C LTR MaLR -4 463 92 1909 114 81 0 chr15 24680363 24680635 -76699886 - AluSc SINE Alu -15 294 1 1847 154 104 82 chr15 24680635 24680730 -76699791 - MLT1C LTR MaLR -375 92 1 1178 164 9 27 chr15 24682874 24683099 -76697422 - MLT1A1 LTR MaLR 0 365 145 279 173 0 0 chr15 24683113 24683165 -76697356 + CT-rich Low_complexity Low_complexity 3 54 0 1998 98 0 52 chr15 24683171 24683458 -76697063 - AluSg SINE Alu -38 272 1 896 131 20 13 chr15 24683458 24683611 -76696910 - MLT1A1 LTR MaLR -209 156 3 317 295 228 25 chr15 24683621 24683858 -76696663 + L1ME4a LINE L1 5783 6067 -54 1059 153 5 20 chr15 24685441 24685644 -76694877 - MER96B DNA MER1_type? -165 252 53 990 321 115 38 chr15 24685667 24686134 -76694387 + L1 LINE L1 4048 4593 -1553 1898 152 7 7 chr15 24686134 24686430 -76694091 + AluSx SINE Alu 1 296 -16 990 321 115 38 chr15 24686430 24686695 -76693826 + L1 LINE L1 4593 4836 -1310 2353 81 0 29 chr15 24686722 24687029 -76693492 + AluSc SINE Alu 1 298 -11 351 250 13 0 chr15 24687046 24687122 -76693399 + MER81 DNA DNA 2 78 -36 437 260 169 26 chr15 24687196 24687350 -76693171 + MER5B DNA MER1_type 3 178 0 484 271 72 62 chr15 24687976 24688408 -76692113 + HAL1 LINE L1 1239 1674 -833 2512 84 0 0 chr15 24690245 24690555 -76689966 + AluY SINE Alu 2 311 0 198 279 58 0 chr15 24690583 24690669 -76689852 + L2 LINE L2 2563 2653 -661 2455 164 13 0 chr15 24690749 24691139 -76689382 - MSTD LTR MaLR 0 396 2 360 0 0 0 chr15 24693752 24693792 -76686729 + (TG)n Simple_repeat Simple_repeat 2 41 0 415 163 0 22 chr15 24694605 24694697 -76685824 + CT-rich Low_complexity Low_complexity 3 92 0 195 42 0 0 chr15 24694697 24694721 -76685800 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr15 24694831 24694853 -76685668 + GC_rich Low_complexity Low_complexity 1 22 0 3335 193 22 3 chr15 24695251 24695899 -76684622 - L1MB5 LINE L1 -1 6173 5514 232 222 0 0 chr15 24696469 24696514 -76684007 + MER53 DNA DNA 10 54 -135 610 152 32 70 chr15 24696516 24696674 -76683847 + L1MB2 LINE L1 6020 6171 0 286 231 0 0 chr15 24696675 24696740 -76683781 - MER53 DNA DNA -33 156 92 193 300 0 0 chr15 24699638 24699696 -76680825 + MIR SINE MIR 98 154 -60 2248 106 0 3 chr15 24699760 24700052 -76680469 - AluSx SINE Alu -21 291 1 3447 171 9 28 chr15 24700428 24701096 -76679425 + L1MB3 LINE L1 5528 6182 -1 1026 167 27 45 chr15 24701745 24701967 -76678554 - MER20 DNA MER1_type -1 218 1 2085 131 7 3 chr15 24704415 24704721 -76675800 + AluSc SINE Alu 1 307 -2 2491 100 0 0 chr15 24704731 24705041 -76675480 + AluSg SINE Alu 1 310 0 363 281 39 31 chr15 24706330 24706458 -76674063 - MIR SINE MIR -85 177 49 334 283 87 3 chr15 24706531 24706722 -76673799 - MIR SINE MIR -3 259 2 298 346 97 35 chr15 24708136 24708619 -76671902 - L1MC/D LINE L1 -1991 5817 5305 1659 136 99 0 chr15 24708624 24708926 -76671595 - L1MA9 LINE L1 -5 6307 5976 2061 139 0 3 chr15 24709179 24709473 -76671048 + AluSx SINE Alu 1 293 -19 273 311 89 60 chr15 24709504 24709926 -76670595 - L1MC/D LINE L1 -1101 5045 4637 2383 108 0 0 chr15 24709926 24710231 -76670290 - AluSx SINE Alu -7 305 1 273 311 89 60 chr15 24710231 24710699 -76669822 - L1MC/D LINE L1 -1509 4637 4129 2733 222 84 69 chr15 24710809 24711644 -76668877 - L1MC5 LINE L1 -112 7849 6991 2641 63 0 0 chr15 24711644 24711947 -76668574 + AluY SINE Alu 1 303 -8 2733 222 84 69 chr15 24711947 24712279 -76668242 - L1MC5 LINE L1 -970 6991 6665 1369 246 71 62 chr15 24712300 24712837 -76667684 + MLT1F LTR MaLR 1 542 0 28 29 0 0 chr15 24713216 24713251 -76667270 + AT_rich Low_complexity Low_complexity 1 35 0 364 271 89 44 chr15 24713393 24713675 -76666846 - L1MC5 LINE L1 -376 5745 5643 242 325 129 50 chr15 24714634 24715575 -76664946 + L2 LINE L2 2130 3168 -104 189 264 143 33 chr15 24715640 24715731 -76664790 + MIR SINE MIR 85 185 -77 821 206 75 33 chr15 24718446 24718660 -76661861 + MER58A DNA MER1_type 1 223 -1 652 174 35 47 chr15 24718752 24718924 -76661597 - MER3 DNA MER1_type -30 179 10 1704 181 0 28 chr15 24721178 24721499 -76659022 + AluJb SINE Alu 1 312 0 2364 70 0 7 chr15 24721546 24721847 -76658674 + AluSp SINE Alu 1 299 -14 4170 192 30 1 chr15 24723935 24724845 -76655676 - L1MA8 LINE L1 -4 6287 5352 1581 198 64 1 chr15 24725644 24726133 -76654388 - MER68 LTR ERV1 0 562 8 238 338 14 0 chr15 24726182 24726253 -76654268 + MIR SINE MIR 50 121 -141 1135 200 9 9 chr15 24727387 24727602 -76652919 + MER20 DNA MER1_type 3 217 -2 2305 96 0 6 chr15 24727618 24727932 -76652589 - AluSq SINE Alu -1 312 1 2135 109 0 13 chr15 24728873 24729175 -76651346 + AluSq SINE Alu 1 298 -15 845 209 0 23 chr15 24731202 24731374 -76649147 + AluJo SINE Alu 1 168 -144 240 152 0 0 chr15 24731376 24731422 -76649099 + Alu SINE Alu 84 129 -4 238 302 174 0 chr15 24733307 24733393 -76647128 - MIR SINE MIR -115 147 47 184 277 126 63 chr15 24733475 24733514 -76647007 + L3 LINE CR1 1298 1333 -244 500 198 27 9 chr15 24733514 24733625 -76646896 - MER81 DNA DNA 0 114 2 184 277 126 63 chr15 24733625 24733744 -76646777 + L3 LINE CR1 1333 1466 -111 212 204 23 0 chr15 24735146 24735190 -76645331 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 321 320 0 0 chr15 24735190 24735268 -76645253 - L2 LINE L2 0 3272 3195 699 294 124 8 chr15 24735744 24736108 -76644413 - MLT1J2 LTR MaLR -7 443 38 319 167 0 0 chr15 24737034 24737088 -76643433 - MIR SINE MIR -131 131 78 1417 254 58 32 chr15 24739086 24739554 -76640967 - L1MB3 LINE L1 -6 6177 5686 322 135 0 0 chr15 24739655 24739707 -76640814 + Alu SINE Alu 239 290 -12 278 224 0 33 chr15 24740972 24741155 -76639366 + (TG)n Simple_repeat Simple_repeat 1 177 0 245 242 8 0 chr15 24741174 24741302 -76639219 + (TG)n Simple_repeat Simple_repeat 1 129 0 297 239 28 0 chr15 24741320 24741429 -76639092 + (TG)n Simple_repeat Simple_repeat 1 112 0 2354 66 0 7 chr15 24742745 24743047 -76637474 + AluY SINE Alu 1 300 -11 2746 9 0 0 chr15 24745672 24746010 -76634511 + L1HS LINE L1 5815 6152 -3 353 257 48 67 chr15 24746010 24746115 -76634406 + L1MDa LINE L1 2382 2517 -4056 181 125 0 50 chr15 24752966 24753006 -76627515 + MER5A DNA MER1_type 84 121 -68 660 255 11 21 chr15 24753362 24753550 -76626971 + MER5A DNA MER1_type 4 189 0 198 0 0 0 chr15 24755092 24755114 -76625407 + (GAGAA)n Simple_repeat Simple_repeat 4 25 0 2170 109 0 7 chr15 24755463 24755766 -76624755 - AluSx SINE Alu -11 301 1 1060 147 11 16 chr15 24755869 24756053 -76624468 - FRAM SINE Alu -1 175 1 343 202 12 36 chr15 24758175 24758259 -76622262 + L1MC/D LINE L1 5680 5761 -2047 232 294 24 8 chr15 24758389 24758515 -76622006 + (CACCC)n Simple_repeat Simple_repeat 3 130 0 279 283 81 30 chr15 24760201 24760300 -76620221 + MER5A DNA MER1_type 84 187 -2 212 214 18 36 chr15 24760364 24760420 -76620101 + L2 LINE L2 1861 1915 -1399 222 236 28 66 chr15 24760754 24760860 -76619661 + L2 LINE L2 2889 2990 -282 948 178 6 0 chr15 24762100 24762274 -76618247 - L1PA12 LINE L1 -4509 3072 2898 383 235 130 9 chr15 24762427 24762542 -76617979 - MIR SINE MIR -17 245 117 238 336 26 18 chr15 24762979 24763092 -76617429 + MIR SINE MIR 109 222 -40 2070 115 0 38 chr15 24764407 24764721 -76615800 + AluSx SINE Alu 1 302 -10 509 227 84 45 chr15 24764795 24764949 -76615572 - MER103 DNA DNA -2 164 5 825 194 0 0 chr15 24765400 24765580 -76614941 + (TG)n Simple_repeat Simple_repeat 1 180 0 180 279 162 0 chr15 24767089 24767157 -76613364 + L2 LINE L2 3184 3262 -10 817 176 80 75 chr15 24771150 24771301 -76609220 + L1MC5 LINE L1 3400 3549 -2597 1851 160 3 7 chr15 24771301 24771607 -76608914 + AluJo SINE Alu 1 305 -7 1922 122 7 53 chr15 24771612 24771916 -76608605 + AluSx SINE Alu 1 290 -22 817 176 80 75 chr15 24771916 24771997 -76608524 + L1MC5 LINE L1 3552 3639 -2507 2127 184 57 27 chr15 24771999 24772195 -76608326 + L1MC5 LINE L1 3770 3959 -2187 2611 62 0 3 chr15 24772195 24772500 -76608021 + AluY SINE Alu 1 304 -7 2127 184 57 27 chr15 24772500 24772781 -76607740 + L1MC5 LINE L1 3959 4261 -1885 3778 158 6 39 chr15 24773884 24774608 -76605913 - L1MD1 LINE L1 -3 6239 5540 1541 86 5 32 chr15 24774943 24775163 -76605358 - AluSg/x SINE Alu -12 300 87 4134 133 329 104 chr15 24775594 24776976 -76603545 - pTR5 LTR ERV1 -1 2437 745 2272 108 10 0 chr15 24776976 24777272 -76603249 + AluSx SINE Alu 10 308 -4 618 224 54 136 chr15 24777597 24777950 -76602571 - L1M4 LINE L1 -1768 4378 4055 2647 62 0 0 chr15 24778565 24778874 -76601647 + AluY SINE Alu 1 309 -2 1761 242 114 23 chr15 24778876 24779447 -76601074 - L1MEc LINE L1 -5731 665 43 701 129 20 0 chr15 24779743 24779868 -76600653 - AluSg/x SINE Alu 0 307 181 1397 183 40 5 chr15 24779968 24780379 -76600142 + L1MC5 LINE L1 5093 5526 -648 484 133 78 0 chr15 24780375 24780465 -76600056 + L1M4 LINE L1 5430 5526 -648 * 3713 173 36 7 chr15 24780465 24781184 -76599337 + L1MB8 LINE L1 5430 6173 -5 1146 175 0 28 chr15 24781238 24781449 -76599072 + MER2 DNA MER2_type 6 210 -135 2246 93 20 7 chr15 24781739 24782041 -76598480 - AluSx SINE Alu -6 306 1 333 266 21 50 chr15 24782981 24783122 -76597399 - MIR SINE MIR -39 169 32 223 119 30 30 chr15 24783764 24783831 -76596690 + (CAGAGA)n Simple_repeat Simple_repeat 2 68 0 2217 84 3 3 chr15 24784091 24784433 -76596088 + AluSp SINE Alu 1 342 0 342 235 67 67 chr15 24784433 24784612 -76595909 + L1MC5 LINE L1 5774 5952 -1856 4034 128 44 39 chr15 24785122 24785446 -76595075 - L1PA16 LINE L1 -5 6161 5840 2494 74 0 0 chr15 24785446 24785745 -76594776 - AluY SINE Alu -12 299 1 4034 128 44 39 chr15 24785745 24786145 -76594376 - L1PA16 LINE L1 -326 5840 5433 828 204 95 36 chr15 24786201 24786505 -76594016 + L1MC5 LINE L1 6640 6961 -1000 246 32 0 0 chr15 24786590 24786621 -76593900 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2109 87 45 0 chr15 24786622 24786888 -76593633 - AluSg SINE Alu -32 278 1 1095 166 73 106 chr15 24786906 24787274 -76593247 - LTR37A LTR ERV1 -52 374 19 261 0 0 0 chr15 24787274 24787303 -76593218 + (T)n Simple_repeat Simple_repeat 1 29 0 262 333 21 0 chr15 24787375 24787471 -76593050 - MER31-int LTR ERV1 -735 4201 4104 2341 84 0 10 chr15 24787814 24788110 -76592411 - AluSg SINE Alu -15 295 3 1770 154 14 17 chr15 24790237 24790529 -76589992 + AluJb SINE Alu 21 311 -1 1036 220 130 43 chr15 24790667 24791013 -76589508 + MER92A LTR ERV1 37 412 0 2567 40 0 17 chr15 24791789 24792091 -76588430 - AluY SINE Alu -14 297 1 331 213 58 85 chr15 24792542 24792590 -76587931 + L1M4 LINE L1 2787 2835 -3311 2373 78 7 0 chr15 24792590 24792913 -76587608 + AluSx SINE Alu 1 325 0 331 213 58 85 chr15 24792913 24793050 -76587471 + L1M4 LINE L1 2835 2969 -3177 3760 226 70 8 chr15 24793280 24794257 -76586264 + L1PB1 LINE L1 6 1042 -5821 349 161 16 0 chr15 24794265 24794327 -76586194 + L1PB1 LINE L1 1094 1156 -5707 15296 188 15 8 chr15 24794332 24799811 -76580710 + L1PB1 LINE L1 1311 6866 -1 937 266 202 12 chr15 24800991 24801502 -76579019 + L1M4 LINE L1 3709 4316 -1830 2015 84 0 4 chr15 24801502 24801752 -76578769 + AluY SINE Alu 1 249 -62 255 31 0 0 chr15 24801905 24801937 -76578584 + (TG)n Simple_repeat Simple_repeat 1 32 0 825 171 39 54 chr15 24801990 24802173 -76578348 + MLT1A1 LTR MaLR 164 345 -20 1773 175 63 29 chr15 24802173 24802556 -76577965 - MSTD LTR MaLR 0 396 1 825 171 39 54 chr15 24802556 24802577 -76577944 + MLT1A1 LTR MaLR 345 365 0 2299 61 0 7 chr15 24805731 24806009 -76574512 + AluY SINE Alu 1 276 -35 215 91 0 23 chr15 24806009 24806053 -76574468 + (CAAAA)n Simple_repeat Simple_repeat 4 46 0 226 274 0 53 chr15 24806665 24806760 -76573761 - L1ME3A LINE L1 0 6170 6081 1488 259 61 13 chr15 24806891 24807369 -76573152 - L1ME3A LINE L1 -202 5968 5468 774 275 100 20 chr15 24807371 24807720 -76572801 + HAL1 LINE L1 1688 2064 -443 6000 239 67 32 chr15 24807738 24808278 -76572243 - L1ME3A LINE L1 -896 5250 4730 2132 119 3 0 chr15 24808278 24808564 -76571957 - AluSx SINE Alu -20 292 6 6000 239 67 32 chr15 24808564 24808652 -76571869 - L1ME3A LINE L1 -1416 4730 4647 2121 114 0 26 chr15 24808652 24808959 -76571562 - AluSq SINE Alu -14 299 1 6000 239 67 32 chr15 24808959 24810433 -76570088 - L1ME3A LINE L1 -1499 4647 3073 6374 84 10 18 chr15 24810440 24811214 -76569307 - L1PA8 LINE L1 0 6291 5528 2351 92 0 0 chr15 24811214 24811517 -76569004 + AluY SINE Alu 1 303 -8 6374 84 10 18 chr15 24811517 24811694 -76568827 - L1PA8 LINE L1 -763 5528 5351 819 133 63 0 chr15 24811672 24811830 -76568691 - L1MA7 LINE L1 -115 6176 6009 * 222 186 17 51 chr15 24812665 24812724 -76567797 + MIR SINE MIR 74 130 -78 5301 165 22 6 chr15 24812896 24813909 -76566612 - L1MB3 LINE L1 -1 6182 5150 243 176 44 59 chr15 24813998 24814066 -76566455 + MER96B DNA MER1_type? 109 175 0 1965 144 44 18 chr15 24814170 24814511 -76566010 - MLT1A1 LTR MaLR -15 350 1 1339 205 28 37 chr15 24814567 24814925 -76565596 + L1MB8 LINE L1 5825 6178 0 1487 176 89 110 chr15 24815350 24815787 -76564734 - LTR12 LTR ERV1 -234 480 53 233 235 0 0 chr15 24815787 24815838 -76564683 - LTR30 LTR ERV1 -670 52 2 359 303 118 11 chr15 24816188 24816366 -76564155 - MER117 DNA MER1_type 0 197 1 1213 245 109 75 chr15 24816657 24817269 -76563252 + L1ME3A LINE L1 5514 6146 -24 2098 137 0 0 chr15 24817315 24817622 -76562899 + AluSx SINE Alu 3 309 -3 1931 218 70 23 chr15 24818087 24818458 -76562063 + MER74B LTR ERVL 66 471 -151 2261 120 15 29 chr15 24818458 24818800 -76561721 + MER1B DNA MER1_type 1 337 0 1931 218 70 23 chr15 24818800 24818960 -76561561 + MER74B LTR ERVL 471 622 0 5931 213 5 9 chr15 24819561 24820864 -76559657 - L1 LINE L1 -1983 4163 2866 6945 42 1 2 chr15 24820864 24821716 -76558805 - L1P LINE L1 -973 5173 4323 372 255 140 32 chr15 24822235 24822259 -76558262 + L2 LINE L2 3099 3119 -153 2279 122 0 0 chr15 24822259 24822571 -76557950 - AluSx SINE Alu 0 312 1 372 255 140 32 chr15 24822571 24822703 -76557818 + L2 LINE L2 3119 3272 0 3081 54 8 3 chr15 24823241 24823611 -76556910 - L1PA8 LINE L1 -1 6171 5800 3096 206 93 18 chr15 24823629 24824390 -76556131 + MER21B LTR ERV1 20 837 -26 1896 127 22 0 chr15 24826637 24826912 -76553609 + AluJb SINE Alu 6 286 -26 683 260 142 31 chr15 24826928 24827216 -76553305 - MLT1I LTR MaLR -89 320 1 305 252 63 47 chr15 24827217 24827344 -76553177 + HAL1b LINE L1 386 514 -834 381 237 89 35 chr15 24827388 24827557 -76552964 + L1MCc LINE L1 25 202 -6221 564 247 17 23 chr15 24827590 24827764 -76552757 + L1MCc LINE L1 1469 1641 -5300 * 1294 236 73 45 chr15 24827762 24828144 -76552377 + L1M4 LINE L1 3791 4183 -1963 2900 155 37 41 chr15 24828146 24828688 -76551833 + MLT2B3 LTR ERVL 1 540 -14 1291 245 91 10 chr15 24828689 24829182 -76551339 + L1M4 LINE L1 4185 4717 -1429 2281 96 3 0 chr15 24830527 24830820 -76549701 - AluSx SINE Alu -18 294 1 21 36 0 0 chr15 24830944 24830972 -76549549 + AT_rich Low_complexity Low_complexity 1 28 0 231 356 0 29 chr15 24831000 24831104 -76549417 + L3b LINE CR1 1397 1497 -86 205 353 52 0 chr15 24831891 24832027 -76548494 + L2 LINE L2 2917 3059 -213 1755 148 3 25 chr15 24832355 24832638 -76547883 + AluJo SINE Alu 29 305 -7 1358 224 22 102 chr15 24832638 24833128 -76547393 + L1MB8 LINE L1 3482 3932 -2214 1151 215 87 8 chr15 24833137 24833504 -76547017 - L1M4 LINE L1 -816 5330 4935 * 3747 172 38 57 chr15 24833501 24833772 -76546749 + L1MB8 LINE L1 5368 5643 -535 330 109 0 0 chr15 24833772 24833818 -76546703 - MADE1 DNA Mariner 0 80 35 3747 172 38 57 chr15 24833818 24834302 -76546219 + L1MB8 LINE L1 5643 6152 -26 2133 111 3 14 chr15 24834314 24834611 -76545910 + AluY SINE Alu 1 294 -17 2160 104 60 11 chr15 24834611 24834958 -76545563 - MSTA LTR MaLR -64 364 1 236 250 31 0 chr15 24835007 24835071 -76545450 + MER63 DNA MER1_type 996 1061 0 1540 174 141 52 chr15 24835992 24836045 -76544476 + MSTD LTR MaLR 1 48 -348 2387 87 3 3 chr15 24836045 24836357 -76544164 + AluSx SINE Alu 1 312 0 1540 174 141 52 chr15 24836357 24836665 -76543856 + MSTD LTR MaLR 48 394 -2 267 306 20 10 chr15 24836757 24836855 -76543666 + MIR SINE MIR 156 254 -8 215 31 31 0 chr15 24836859 24836891 -76543630 + (CAT)n Simple_repeat Simple_repeat 1 33 0 208 226 38 0 chr15 24837361 24837414 -76543107 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 1431 170 4 61 chr15 24837743 24838020 -76542501 + AluJo SINE Alu 29 289 -23 1575 162 26 26 chr15 24838023 24838332 -76542189 - AluSx SINE Alu -3 309 1 291 225 0 42 chr15 24839570 24839641 -76540880 - L1MB8 LINE L1 -168 6010 5943 635 312 119 29 chr15 24839663 24840353 -76540168 + L1MC4a LINE L1 3341 4092 -2054 21 0 0 0 chr15 24841300 24841321 -76539200 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr15 24841567 24841596 -76538925 + AT_rich Low_complexity Low_complexity 1 29 0 574 271 78 53 chr15 24841598 24841919 -76538602 + L1MC4a LINE L1 5291 5619 -2189 232 213 53 53 chr15 24841971 24842046 -76538475 + L2 LINE L2 3231 3305 -8 350 248 41 92 chr15 24842046 24842076 -76538445 + L1MC4a LINE L1 5675 5705 -2103 2023 127 13 13 chr15 24842076 24842376 -76538145 + AluJb SINE Alu 4 303 -9 2286 79 0 26 chr15 24842376 24842680 -76537841 + AluSq SINE Alu 1 296 -17 350 248 41 92 chr15 24842680 24842866 -76537655 + L1MC4a LINE L1 5703 5881 -1927 411 21 0 0 chr15 24842939 24842987 -76537534 + (CA)n Simple_repeat Simple_repeat 1 48 0 301 326 10 77 chr15 24843149 24843554 -76536967 + L1ME4a LINE L1 4456 4833 -1313 335 256 114 31 chr15 24844301 24844555 -76535966 + L1ME4a LINE L1 5119 5393 -753 613 261 84 28 chr15 24844611 24844860 -76535661 + L1ME4a LINE L1 5381 5643 -478 343 221 111 142 chr15 24844904 24845008 -76535513 + L1ME4a LINE L1 5741 5847 -274 2005 122 49 0 chr15 24845008 24845295 -76535226 + AluSx SINE Alu 1 301 -11 343 221 111 142 chr15 24845295 24845570 -76534951 + L1ME4a LINE L1 5847 6108 -13 2126 183 38 19 chr15 24845672 24846092 -76534429 - MSTA LTR MaLR 0 428 1 329 306 30 22 chr15 24846092 24846226 -76534295 - MIR3 SINE MIR -71 137 3 1524 102 69 5 chr15 24847399 24847615 -76532906 - MER30 DNA MER1_type 0 230 1 1330 72 17 17 chr15 24847649 24847830 -76532691 - MER30 DNA MER1_type -49 181 1 1424 223 113 46 chr15 24848807 24849390 -76531131 - L1MC5 LINE L1 -28 7933 7312 2289 83 17 0 chr15 24849419 24849708 -76530813 - AluSc SINE Alu -15 294 1 863 210 48 35 chr15 24849721 24849950 -76530571 - L1MC5 LINE L1 -722 7239 7008 1119 166 73 106 chr15 24850143 24850511 -76530010 + LTR37A LTR ERV1 19 374 -52 2089 87 45 0 chr15 24850529 24850795 -76529726 + AluSg SINE Alu 1 278 -32 213 65 0 0 chr15 24850796 24850827 -76529694 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 838 204 95 36 chr15 24850911 24851215 -76529306 - L1MC5 LINE L1 -1000 6961 6640 2908 127 23 21 chr15 24851271 24851742 -76528779 + L1PA14 LINE L1 5433 5904 -257 2356 76 3 0 chr15 24852689 24852979 -76527542 - AluY SINE Alu -17 294 4 2238 191 6 0 chr15 24853750 24854111 -76526410 + MLT1A1 LTR MaLR 3 365 0 2596 113 28 35 chr15 24855591 24855958 -76524563 - L1PA15 LINE L1 -14 6151 5786 2221 120 0 7 chr15 24855958 24856267 -76524254 - AluSx SINE Alu -5 307 1 2596 113 28 35 chr15 24856267 24856298 -76524223 - L1PA15 LINE L1 -379 5786 5756 1216 244 13 0 chr15 24856300 24856607 -76523914 + L1P LINE L1 2562 2872 -3274 5913 210 8 11 chr15 24856790 24858092 -76522429 - L1 LINE L1 -1983 4879 3582 7893 37 2 0 chr15 24858092 24859042 -76521479 - L1PA5 LINE L1 -973 5173 4222 7842 38 7 0 chr15 24859042 24860022 -76520499 + L1PA5 LINE L1 5169 6154 0 4831 139 51 38 chr15 24860036 24860506 -76520015 - L1PBa LINE L1 -3267 3595 3133 3362 75 49 5 chr15 24860506 24860890 -76519631 + MLT2A1 LTR ERVL 1 407 -37 221 0 35 0 chr15 24860890 24860919 -76519602 + (TA)n Simple_repeat Simple_repeat 2 31 0 3362 75 49 5 chr15 24860919 24860959 -76519562 + MLT2A1 LTR ERVL 407 444 0 4831 139 51 38 chr15 24860959 24861945 -76518576 - L1PBa LINE L1 -3729 3133 2132 300 172 65 32 chr15 24862051 24862144 -76518377 - L1ME4a LINE L1 -1 6120 6025 231 36 0 0 chr15 24862175 24862203 -76518318 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 3976 66 15 11 chr15 24862203 24862733 -76517788 - LTR6B LTR ERV1 -26 532 1 4150 167 79 4 chr15 24862733 24863662 -76516859 - L1PBa LINE L1 -4728 2135 990 * 6034 147 11 11 chr15 24863657 24864932 -76515589 + L1PB1 LINE L1 4511 5793 -358 489 17 0 0 chr15 24864932 24864990 -76515531 + (TA)n Simple_repeat Simple_repeat 2 59 0 6034 147 11 11 chr15 24864990 24865349 -76515172 + L1PB1 LINE L1 5793 6150 -1 2392 88 0 0 chr15 24866530 24866824 -76513697 - AluSg SINE Alu -15 295 2 240 241 0 0 chr15 24867167 24867225 -76513296 + L1MB4 LINE L1 5688 5745 -2063 3994 90 43 2 chr15 24867327 24867859 -76512662 + MER41A LTR ERV1 1 554 0 4387 127 97 35 chr15 24869316 24870637 -76509884 - pTR5 LTR ERV1 0 2438 743 1947 144 6 41 chr15 24873318 24873376 -76507145 + L1MB4 LINE L1 5852 5911 -269 2257 91 37 0 chr15 24873376 24873674 -76506847 + AluSg SINE Alu 2 310 0 1947 144 6 41 chr15 24873674 24873956 -76506565 + L1MB4 LINE L1 5911 6180 0 26 0 0 0 chr15 24874285 24874311 -76506210 + AT_rich Low_complexity Low_complexity 1 26 0 987 315 120 42 chr15 24874699 24875667 -76504854 + L2 LINE L2 1705 2747 -567 900 333 53 5 chr15 24875885 24876350 -76504171 - L2 LINE L2 -189 3083 2590 367 279 83 59 chr15 24876582 24876786 -76503735 + L2 LINE L2 2287 2495 -819 2251 107 3 3 chr15 24877205 24877515 -76503006 - AluSx SINE Alu -2 310 1 1707 122 52 38 chr15 24877822 24877989 -76502532 - AluJo SINE Alu -21 291 117 234 0 0 0 chr15 24877989 24878015 -76502506 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1707 122 52 38 chr15 24878015 24878134 -76502387 - AluJo SINE Alu -195 117 1 3220 233 40 55 chr15 24880765 24881008 -76499513 + L1MB8 LINE L1 2839 3084 -3062 2259 109 0 0 chr15 24881008 24881312 -76499209 + AluSg1 SINE Alu 1 304 -5 3220 233 40 55 chr15 24881312 24881688 -76498833 + L1MB8 LINE L1 3084 3464 -2682 1920 154 3 22 chr15 24881688 24881999 -76498522 + AluJo SINE Alu 1 305 -7 3220 233 40 55 chr15 24881999 24882489 -76498032 + L1MB8 LINE L1 3464 3932 -2214 1151 215 87 8 chr15 24882498 24882865 -76497656 - L1M4 LINE L1 -816 5330 4935 * 3747 172 38 57 chr15 24882862 24883133 -76497388 + L1MB8 LINE L1 5368 5643 -535 330 109 0 0 chr15 24883133 24883179 -76497342 - MADE1 DNA Mariner 0 80 35 3747 172 38 57 chr15 24883179 24883663 -76496858 + L1MB8 LINE L1 5643 6152 -26 2167 116 0 13 chr15 24883675 24883978 -76496543 + AluY SINE Alu 1 299 -12 232 115 77 0 chr15 24883978 24884030 -76496491 - MER44D DNA MER2_type -123 582 527 * 3971 123 15 2 chr15 24884026 24884682 -76495839 + MER72 LTR ERV1 9 722 0 547 134 229 0 chr15 24884682 24884811 -76495710 - MER44D DNA MER2_type -167 438 10 4184 45 16 10 chr15 24885309 24885796 -76494725 - LTR2B LTR ERV1 0 490 1 26 50 0 0 chr15 24887663 24887703 -76492818 + GC_rich Low_complexity Low_complexity 1 40 0 30 27 0 0 chr15 24888763 24888800 -76491721 + AT_rich Low_complexity Low_complexity 1 37 0 325 314 38 0 chr15 24889242 24889347 -76491174 + MIR SINE MIR 35 143 -119 362 274 89 45 chr15 24889607 24889786 -76490735 + MIR SINE MIR 9 195 -67 411 264 139 79 chr15 24890504 24891054 -76489467 - L1ME2 LINE L1 -235 5929 5306 327 262 131 45 chr15 24891200 24891421 -76489100 - L1ME2 LINE L1 -1039 5107 4868 2315 104 0 0 chr15 24891515 24891814 -76488707 - AluSq SINE Alu -14 299 1 304 239 68 118 chr15 24891840 24892179 -76488342 - L1ME2 LINE L1 -1956 4190 3869 260 207 0 17 chr15 24892383 24892441 -76488080 - L1MC4 LINE L1 -2 8040 7984 1477 211 61 8 chr15 24892454 24892814 -76487707 - L1MC4 LINE L1 -399 7643 7265 1460 227 87 48 chr15 24892811 24893003 -76487518 - L1MC4a LINE L1 -830 6978 6795 * 2397 66 13 3 chr15 24893003 24893305 -76487216 - AluY SINE Alu -2 309 5 1460 227 87 48 chr15 24893305 24893637 -76486884 - L1MC4a LINE L1 -1013 6795 6439 237 271 171 11 chr15 24893859 24894128 -76486393 - L1ME2 LINE L1 -2499 3647 3336 4583 152 66 15 chr15 24894152 24894954 -76485567 - MER21A LTR ERV1 -2 929 87 594 241 123 44 chr15 24895101 24895644 -76484877 - L1ME2 LINE L1 -2884 3262 2677 515 257 7 29 chr15 24895655 24895791 -76484730 - FLAM_A SINE Alu 0 133 1 1394 175 8 16 chr15 24895806 24896058 -76484463 - AluJo SINE Alu -24 288 39 378 265 123 24 chr15 24896403 24896614 -76483907 - L1MC5 LINE L1 -29 7932 7701 1253 214 47 126 chr15 24896618 24897188 -76483333 - L1M4 LINE L1 -2213 4431 3907 814 181 0 0 chr15 24897188 24897326 -76483195 - MER67A LTR ERV1 0 543 406 204 40 0 0 chr15 24897365 24897390 -76483131 + (TA)n Simple_repeat Simple_repeat 2 26 0 782 150 0 0 chr15 24897391 24897504 -76483017 - AluJb SINE Alu -199 113 1 1770 147 24 53 chr15 24897506 24897847 -76482674 - MER67A LTR ERV1 -127 416 86 772 256 13 34 chr15 24897874 24898108 -76482413 - L1M4 LINE L1 -5485 1057 829 238 254 34 0 chr15 24898140 24898199 -76482322 - L1M4 LINE L1 -6409 133 73 2344 152 2 25 chr15 24898240 24898642 -76481879 + L1MB3 LINE L1 5791 6183 0 229 82 20 61 chr15 24898650 24898699 -76481822 + L1MB3 LINE L1 6137 6183 0 2389 84 0 10 chr15 24898961 24899271 -76481250 - AluSg SINE Alu -2 308 2 1292 246 32 61 chr15 24899567 24899829 -76480692 + L1MC4a LINE L1 5523 5770 -2038 2215 88 3 0 chr15 24899829 24900159 -76480362 + AluSp SINE Alu 1 331 0 1292 246 32 61 chr15 24900159 24900337 -76480184 + L1MC4a LINE L1 5770 5952 -1856 1723 161 65 6 chr15 24900847 24901170 -76479351 - L1PA16 LINE L1 -5 6161 5820 1869 152 10 7 chr15 24901171 24901468 -76479053 - AluJb SINE Alu -14 298 1 222 171 0 0 chr15 24901541 24901582 -76478939 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 1378 164 72 34 chr15 24901583 24901846 -76478675 - Tigger3(Golem) DNA MER2_type -1 3028 2756 432 199 175 30 chr15 24901867 24902033 -76478488 - L2 LINE L2 -250 3063 2874 258 329 0 0 chr15 24902034 24902110 -76478411 - Tigger3(Golem) DNA MER2_type -2953 76 1 1153 305 74 6 chr15 24902190 24902840 -76477681 - L1 LINE L1 -1033 5113 4415 487 289 61 56 chr15 24902885 24903065 -76477456 - MLT1H1 LTR MaLR 0 555 377 1019 266 61 66 chr15 24903065 24903624 -76476897 - LTR38 LTR ERV1 0 556 1 487 289 61 56 chr15 24903624 24903989 -76476532 - MLT1H1 LTR MaLR -178 377 1 1929 284 77 24 chr15 24903996 24904978 -76475543 - L1 LINE L1 -1782 4364 3331 440 286 132 5 chr15 24905106 24905295 -76475226 - LTR50 LTR ERVL -582 213 1 1892 114 4 0 chr15 24905809 24906072 -76474449 - AluSx SINE Alu -2 310 47 628 280 88 18 chr15 24906282 24906611 -76473910 + L1ME3A LINE L1 5614 5965 -199 231 274 0 53 chr15 24906746 24906841 -76473680 + L1ME3A LINE L1 6081 6170 0 376 331 20 0 chr15 24906921 24907072 -76473449 + L1ME LINE L1 5479 5632 -538 287 283 18 26 chr15 24907157 24907270 -76473251 - MLT1H LTR MaLR -311 238 127 2337 102 0 0 chr15 24907632 24907926 -76472595 - AluSg SINE Alu -15 295 2 1991 170 50 31 chr15 24907951 24908493 -76472028 + MLT2A2 LTR ERVL 1 554 0 719 181 0 0 chr15 24908493 24908609 -76471912 + MER44D DNA MER2_type 489 604 -1 647 289 41 18 chr15 24908624 24908842 -76471679 - MIR SINE MIR -32 230 8 197 77 0 0 chr15 24909010 24909036 -76471485 + L2 LINE L2 3207 3232 -40 2020 210 109 16 chr15 24909117 24909613 -76470908 - MER34 LTR ERV1 0 542 1 533 281 141 19 chr15 24910964 24911234 -76469287 + MLT1K LTR MaLR 282 584 -4 2229 110 7 0 chr15 24911489 24911788 -76468733 + AluSx SINE Alu 1 301 -11 499 140 11 43 chr15 24911864 24911957 -76468564 - MER1B DNA MER1_type 0 339 250 * 1228 133 16 0 chr15 24911954 24912142 -76468379 - MER1B DNA MER1_type -106 191 1 303 306 83 0 chr15 24912377 24912485 -76468036 + HAL1b LINE L1 83 199 -1149 326 299 0 0 chr15 24913140 24913237 -76467284 - L1M4 LINE L1 -1258 4888 4792 1013 227 45 39 chr15 24913237 24913567 -76466954 - MLT1B LTR MaLR 0 390 59 1181 164 82 39 chr15 24913920 24914152 -76466369 + Tigger3(Golem) DNA MER2_type 2786 3027 -2 222 171 0 0 chr15 24914153 24914194 -76466327 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 1935 151 10 6 chr15 24914267 24914578 -76465943 + AluJb SINE Alu 1 312 0 1524 234 75 26 chr15 24914606 24914910 -76465611 + L1ME3 LINE L1 5346 5685 -477 2244 102 0 0 chr15 24914910 24915193 -76465328 + AluSx SINE Alu 6 288 -24 1524 234 75 26 chr15 24915193 24915379 -76465142 + L1ME3 LINE L1 5685 5860 -302 999 271 106 31 chr15 24915446 24915997 -76464524 + L2 LINE L2 2718 3310 -3 241 225 69 106 chr15 24916101 24916261 -76464260 - HAL1 LINE L1 -1814 693 540 521 286 77 46 chr15 24916305 24916630 -76463891 + MLT1I LTR MaLR 68 402 -7 471 333 48 33 chr15 24916704 24917101 -76463420 - HAL1 LINE L1 -2057 450 48 294 179 0 0 chr15 24917598 24917654 -76462867 + CT-rich Low_complexity Low_complexity 3 58 0 264 59 0 0 chr15 24917679 24917713 -76462808 + (TTCC)n Simple_repeat Simple_repeat 2 35 0 2190 123 10 0 chr15 24917713 24918021 -76462500 - AluSq SINE Alu -1 312 2 360 235 0 0 chr15 24918532 24918600 -76461921 - MLT1K LTR MaLR -15 573 506 2389 44 14 30 chr15 24918600 24918897 -76461624 - AluY SINE Alu -19 292 1 2389 196 97 6 chr15 24920791 24921295 -76459226 - MER44D DNA MER2_type 0 605 1 1168 171 96 32 chr15 24921317 24921568 -76458953 + MLT2D LTR ERVL 146 412 -2 488 215 114 7 chr15 24921572 24921721 -76458800 - L2 LINE L2 -697 2617 2453 458 112 2 17 chr15 24922040 24922113 -76458408 - MLT1C LTR MaLR 0 467 406 442 241 0 11 chr15 24922207 24922294 -76458227 + MER58 DNA MER1_type 5 90 -125 385 285 10 57 chr15 24922358 24922551 -76457970 + L1MEc LINE L1 638 821 -5575 267 267 70 64 chr15 24922629 24922801 -76457720 + L1MC5 LINE L1 6876 7048 -913 989 232 89 36 chr15 24922820 24923212 -76457309 + L1MC5 LINE L1 7112 7524 -437 2105 265 85 21 chr15 24923292 24924314 -76456207 + L1M4 LINE L1 2670 3756 -2390 286 250 40 0 chr15 24924567 24924643 -76455878 - MLT1B LTR MaLR 0 530 452 548 212 147 41 chr15 24924891 24925136 -76455385 - MLT1B LTR MaLR -118 272 2 924 218 28 40 chr15 24925157 24925322 -76455199 - L1M4 LINE L1 -1373 4773 4611 2426 75 0 0 chr15 24925322 24925614 -76454907 - AluSc SINE Alu -17 292 1 924 218 28 40 chr15 24925614 24925700 -76454821 - L1M4 LINE L1 -1535 4611 4525 789 283 78 44 chr15 24927297 24927707 -76452814 + MLT1L LTR MaLR 184 607 -8 2229 127 51 25 chr15 24928051 24928406 -76452115 + THE1B LTR MaLR 1 364 0 452 169 0 0 chr15 24929296 24929367 -76451154 - AluJ/FRAM SINE Alu -10 302 232 1842 124 0 11 chr15 24929391 24929657 -76450864 - AluSq SINE Alu -50 263 1 1355 212 49 61 chr15 24930159 24930550 -76449971 + MLT1B LTR MaLR 1 386 -4 1536 116 19 0 chr15 24930784 24930999 -76449522 + AluSg/x SINE Alu 83 301 -11 923 192 72 5 chr15 24931315 24931523 -76448998 + MER34 LTR ERV1 1 222 -320 1096 171 35 0 chr15 24931585 24931784 -76448737 + MER34 LTR ERV1 337 542 0 2125 117 0 32 chr15 24932105 24932413 -76448108 + AluSx SINE Alu 1 298 -14 2027 132 0 17 chr15 24934017 24934313 -76446208 + AluSx SINE Alu 1 291 -21 702 246 116 78 chr15 24934473 24934996 -76445525 + L1M4 LINE L1 3796 4297 -1849 14937 125 46 4 chr15 24934996 24937317 -76443204 + Tigger1 DNA MER2_type 2 2418 0 702 246 116 78 chr15 24937317 24937378 -76443143 + L1M4 LINE L1 4297 4354 -1792 2205 115 3 0 chr15 24937378 24937674 -76442847 + AluSx SINE Alu 1 297 -15 702 246 116 78 chr15 24937674 24938391 -76442130 + L1M4 LINE L1 4354 5214 -932 23 68 0 0 chr15 24938714 24938758 -76441763 + AT_rich Low_complexity Low_complexity 1 44 0 564 226 56 78 chr15 24939020 24939326 -76441195 + L1MC5 LINE L1 7610 7908 -53 875 258 113 19 chr15 24939656 24940178 -76440343 + L2 LINE L2 2744 3313 0 1671 287 123 21 chr15 24940302 24941101 -76439420 - L2 LINE L2 -543 2771 1892 500 117 0 0 chr15 24941668 24941745 -76438776 - AluJ/FRAM SINE Alu -4 308 232 1916 105 8 4 chr15 24941769 24942027 -76438494 - AluSq SINE Alu -50 263 5 1718 158 54 3 chr15 24942031 24942366 -76438155 - L1MB3 LINE L1 -40 6143 5792 933 181 0 18 chr15 24943272 24943438 -76437083 + Tigger1 DNA MER2_type 1 163 -2255 * 1100 167 0 77 chr15 24943419 24943467 -76437054 + Tigger1 DNA MER2_type 2202 2252 -166 2577 62 0 0 chr15 24943467 24943772 -76436749 - AluY SINE Alu -6 305 1 1100 167 0 77 chr15 24943772 24943957 -76436564 + Tigger1 DNA MER2_type 2252 2417 -1 1163 265 77 20 chr15 24944723 24945188 -76435333 + L1MC3 LINE L1 1 839 -5583 9450 166 104 77 chr15 24945206 24946520 -76434001 + L1MC3 LINE L1 877 2155 -6425 2272 101 0 7 chr15 24946520 24946826 -76433695 + AluSg SINE Alu 1 304 -6 9450 166 104 77 chr15 24946826 24946922 -76433599 + L1MC3 LINE L1 2155 2247 -6333 1664 80 9 0 chr15 24946922 24947146 -76433375 + L1PA10 LINE L1 5939 6164 -4 9450 166 104 77 chr15 24947146 24947300 -76433221 + L1MC3 LINE L1 2247 2395 -6185 1480 166 50 0 chr15 24947300 24947583 -76432938 - L1MA8 LINE L1 -4 6287 5991 9450 166 104 77 chr15 24947583 24947636 -76432885 + L1MC3 LINE L1 2395 2445 -6135 2637 161 11 25 chr15 24947636 24948107 -76432414 + MER4C LTR ERV1 1 464 -1 9450 166 104 77 chr15 24948107 24948223 -76432298 + L1MC3 LINE L1 2445 2556 -6024 3570 181 106 16 chr15 24948223 24949014 -76431507 + MER21B LTR ERV1 1 862 -1 9450 166 104 77 chr15 24949014 24949259 -76431262 + L1MC3 LINE L1 2556 2793 -5787 1366 201 73 4 chr15 24949259 24949533 -76430988 - AluJo SINE Alu -19 293 1 9450 166 104 77 chr15 24949533 24952459 -76428062 + L1MC3 LINE L1 2793 5640 -2940 2305 82 0 20 chr15 24952459 24952764 -76427757 + AluY SINE Alu 1 299 -12 9450 166 104 77 chr15 24952764 24954048 -76426473 + L1MC3 LINE L1 5640 6888 -1692 1123 179 159 14 chr15 24954048 24954234 -76426287 - MER44D DNA MER2_type -1882 609 451 2455 70 0 3 chr15 24954234 24954532 -76425989 + AluY SINE Alu 1 297 -14 1123 179 159 14 chr15 24954532 24954641 -76425880 - MER44D DNA MER2_type -2040 451 1 9450 166 104 77 chr15 24954641 24955060 -76425461 + L1MC3 LINE L1 6888 7294 -1286 397 239 9 44 chr15 24955060 24955173 -76425348 + MLT1F1 LTR MaLR 25 133 -434 9450 166 104 77 chr15 24955173 24955310 -76425211 + L1MC3 LINE L1 7294 7426 -1154 2097 104 0 42 chr15 24955310 24955618 -76424903 + AluSc SINE Alu 1 295 -14 9450 166 104 77 chr15 24955618 24956055 -76424466 + L1MC3 LINE L1 7426 8580 0 2339 90 3 0 chr15 24957831 24958132 -76422389 + AluSp SINE Alu 1 302 -11 2338 177 20 22 chr15 24958849 24959307 -76421214 + MLT1C LTR MaLR 1 457 -10 489 241 111 128 chr15 24959807 24960368 -76420153 + MLT1G LTR MaLR 40 590 0 2541 62 0 3 chr15 24961013 24961317 -76419204 + AluY SINE Alu 1 303 -8 1903 168 3 0 chr15 24961467 24961765 -76418756 - AluJb SINE Alu -13 299 1 551 240 120 5 chr15 24962852 24963052 -76417469 - MIR SINE MIR -19 243 21 320 310 26 9 chr15 24963041 24963154 -76417367 + MIR SINE MIR 46 160 -102 * 1110 71 0 0 chr15 24963470 24963610 -76416911 + AluSg/x SINE Alu 173 312 0 201 325 44 26 chr15 24966293 24966407 -76414114 - MIR3 SINE MIR -87 121 6 288 239 11 34 chr15 24966411 24966499 -76414022 + (TTCA)n Simple_repeat Simple_repeat 3 88 0 679 312 98 21 chr15 24967565 24967995 -76412526 - L1MC/D LINE L1 -2069 5739 5277 21 0 0 0 chr15 24968074 24968095 -76412426 + AT_rich Low_complexity Low_complexity 1 21 0 309 258 178 48 chr15 24968154 24968333 -76412188 + L1MC4a LINE L1 5795 5949 -1859 2067 153 43 85 chr15 24968333 24968816 -76411705 + MLT2C2 LTR ERVL 1 463 -1 309 258 178 48 chr15 24968816 24968973 -76411548 + L1MC4a LINE L1 5949 6175 -1633 351 96 0 0 chr15 24970071 24970123 -76410398 + (CA)n Simple_repeat Simple_repeat 2 53 0 566 313 82 0 chr15 24971050 24971258 -76409263 - MIR SINE MIR -20 242 18 1354 205 85 3 chr15 24972318 24972478 -76408043 - AluJo SINE Alu -6 306 160 180 0 0 0 chr15 24972478 24972498 -76408023 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1354 205 85 3 chr15 24972498 24972620 -76407901 - AluJo SINE Alu -152 160 1 289 278 22 0 chr15 24973300 24973390 -76407131 - L2 LINE L2 0 3313 3222 1843 104 4 19 chr15 24974803 24975072 -76405449 + AluSx SINE Alu 39 303 -9 204 40 0 0 chr15 24975075 24975100 -76405421 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 464 310 154 16 chr15 24975251 24975622 -76404899 - L1M4 LINE L1 -2579 3567 3146 2169 107 10 0 chr15 24975897 24976187 -76404334 + AluSx SINE Alu 5 297 -15 1693 156 39 67 chr15 24976246 24976604 -76403917 - MER7A DNA MER2_type 0 346 1 260 224 0 141 chr15 24976800 24976871 -76403650 - MIR SINE MIR 0 262 183 1561 148 50 44 chr15 24976871 24977169 -76403352 - AluJo SINE Alu -8 304 5 1814 177 0 3 chr15 24977175 24977469 -76403052 - AluJo SINE Alu -19 293 1 260 224 0 141 chr15 24977469 24977546 -76402975 - MIR SINE MIR -84 178 129 32 26 0 0 chr15 24978373 24978412 -76402109 + AT_rich Low_complexity Low_complexity 1 39 0 240 235 10 49 chr15 24978652 24978668 -76401853 + (TATG)n Simple_repeat Simple_repeat 3 18 -82 198 0 0 0 chr15 24978668 24978690 -76401831 + (TAGG)n Simple_repeat Simple_repeat 1 22 0 240 235 10 49 chr15 24978690 24978775 -76401746 + (TATG)n Simple_repeat Simple_repeat 18 100 0 197 329 24 0 chr15 24978780 24978865 -76401656 - MIR SINE MIR -8 254 168 200 308 11 11 chr15 24978923 24979014 -76401507 - MIR SINE MIR -74 188 98 335 272 68 0 chr15 24979015 24979118 -76401403 - MIR SINE MIR -90 172 63 2580 172 42 22 chr15 24979168 24979673 -76400848 + MLT2B2 LTR ERVL 1 515 0 909 263 211 12 chr15 24980117 24980543 -76399978 + LTR33 LTR ERVL 3 513 -8 335 324 0 0 chr15 24981263 24981368 -76399153 + L1ME2 LINE L1 6038 6142 -22 309 215 15 0 chr15 24981471 24981536 -76398985 + L1MC4 LINE L1 6638 6703 -1339 2613 62 3 0 chr15 24981537 24981846 -76398675 - AluY SINE Alu -1 310 1 710 321 105 24 chr15 24981884 24982778 -76397743 + L1ME3A LINE L1 4401 5367 -779 2478 44 13 32 chr15 24982797 24983113 -76397408 + AluY SINE Alu 1 310 -1 646 310 39 18 chr15 24983241 24983622 -76396899 + L1ME3A LINE L1 5557 5951 -213 28 0 0 0 chr15 24983834 24983862 -76396659 + AT_rich Low_complexity Low_complexity 1 28 0 2113 114 0 23 chr15 24984653 24984952 -76395569 - AluSg SINE Alu -18 292 1 2235 124 3 3 chr15 24987609 24987916 -76392605 - AluSx SINE Alu -5 307 1 189 276 216 17 chr15 24989511 24989692 -76390829 + MIR SINE MIR 19 235 -27 27 0 0 0 chr15 24989962 24989989 -76390532 + AT_rich Low_complexity Low_complexity 1 27 0 3549 123 26 9 chr15 24989989 24990488 -76390033 - L1MC1 LINE L1 0 6333 5821 2073 129 3 0 chr15 24990488 24990775 -76389746 - AluSx SINE Alu -4 308 21 3549 123 26 9 chr15 24990775 24990853 -76389668 - L1MC1 LINE L1 -512 5821 5746 2175 118 0 3 chr15 24991330 24991618 -76388903 - AluSx SINE Alu -25 287 1 1108 221 79 25 chr15 24991664 24991981 -76388540 - L1ME1 LINE L1 -5 6161 5828 4337 238 43 44 chr15 24992226 24993285 -76387236 + L1M4 LINE L1 1 1060 -5586 1984 143 3 20 chr15 24993285 24993586 -76386935 + AluSx SINE Alu 1 296 -16 4337 238 43 44 chr15 24993586 24993841 -76386680 + L1M4 LINE L1 1060 1314 -5332 1827 161 0 30 chr15 24993841 24994145 -76386376 + AluJo SINE Alu 1 295 -17 4337 238 43 44 chr15 24994145 24994845 -76385676 + L1M4 LINE L1 1314 2018 -4628 1458 168 183 40 chr15 24994950 24995350 -76385171 + MSTB2 LTR MaLR 1 457 0 987 206 78 5 chr15 24995350 24995704 -76384817 + L1M4 LINE L1 2588 2970 -3674 390 310 110 0 chr15 24995847 24996002 -76384519 - MER5B DNA MER1_type -4 174 3 315 260 48 19 chr15 24996010 24996114 -76384407 + MIR SINE MIR 13 119 -143 272 26 0 26 chr15 24996274 24996312 -76384209 + (CAT)n Simple_repeat Simple_repeat 3 39 0 396 0 0 0 chr15 24996595 24996639 -76383882 + (CA)n Simple_repeat Simple_repeat 2 45 0 241 320 100 7 chr15 24996918 24997157 -76383364 + L1ME4a LINE L1 904 1172 -4947 255 103 0 0 chr15 24997157 24997196 -76383325 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 241 320 100 7 chr15 24997196 24997225 -76383296 + L1ME4a LINE L1 1172 1197 -4922 2659 148 11 25 chr15 24997352 24997791 -76382730 + Tigger2a DNA MER2_type 1 433 -1 237 340 10 0 chr15 24997959 24998059 -76382462 + L1ME4a LINE L1 4721 4821 -1308 311 303 99 36 chr15 24998118 24998339 -76382182 + L1ME4a LINE L1 4889 5123 -1006 215 30 0 30 chr15 24998401 24998434 -76382087 + (TAAAAA)n Simple_repeat Simple_repeat 2 33 0 275 269 0 25 chr15 24998802 24998921 -76381600 + T-rich Low_complexity Low_complexity 5 120 0 511 254 78 54 chr15 24999044 24999379 -76381142 + L1ME4a LINE L1 5762 6104 0 1174 182 43 38 chr15 24999461 24999808 -76380713 - L1MEc LINE L1 -4176 2220 1872 620 246 77 49 chr15 24999792 25000182 -76380339 - L1MEc LINE L1 -4993 1403 1003 * 2124 273 49 5 chr15 25000223 25000810 -76379711 - L1MEc LINE L1 -5578 818 206 942 282 59 17 chr15 25000818 25001105 -76379416 + ERVL LTR ERVL 1341 1639 -4125 261 0 0 0 chr15 25001789 25001818 -76378703 + (CA)n Simple_repeat Simple_repeat 2 30 0 184 306 81 62 chr15 25002540 25002773 -76377748 - L2 LINE L2 -557 2757 2512 2171 110 3 0 chr15 25002773 25003093 -76377428 + AluSg SINE Alu 1 321 0 184 306 81 62 chr15 25003093 25003243 -76377278 - L2 LINE L2 -802 2512 2366 183 263 53 18 chr15 25003303 25003360 -76377161 + MIR3 SINE MIR 10 68 -140 1802 189 39 8 chr15 25003610 25003970 -76376551 + MLT2D LTR ERVL 3 373 -41 225 246 29 0 chr15 25003970 25004039 -76376482 + (TA)n Simple_repeat Simple_repeat 2 72 0 257 224 0 0 chr15 25004041 25004099 -76376422 + MLT2D LTR ERVL 455 512 -8 2259 89 3 7 chr15 25005165 25005456 -76375065 + AluSg1 SINE Alu 14 303 -6 1156 101 0 0 chr15 25006103 25006252 -76374269 + AluSg/x SINE Alu 149 297 -15 303 177 302 10 chr15 25009474 25009570 -76370951 + MLT1E1 LTR MaLR 2 125 -529 3985 166 26 35 chr15 25009659 25010441 -76370080 + LTR1 LTR ERV1 11 785 0 574 225 0 0 chr15 25010441 25010552 -76369969 + MLT1E1 LTR MaLR 537 647 -7 828 201 65 15 chr15 25010555 25010754 -76369767 + MLT1A2 LTR MaLR 1 209 -165 4494 29 0 0 chr15 25010774 25011295 -76369226 - L1PA5 LINE L1 -1795 4351 3831 8650 38 7 2 chr15 25011295 25013100 -76367421 + L1PA5 LINE L1 4342 6151 -3 761 200 33 7 chr15 25013146 25013296 -76367225 + MLT1A2 LTR MaLR 237 390 0 317 185 169 23 chr15 25015648 25015778 -76364743 + Charlie4a DNA MER1_type 251 399 -109 2395 80 0 13 chr15 25015789 25016102 -76364419 - AluY SINE Alu -2 309 1 1098 60 0 8 chr15 25016103 25016236 -76364285 - AluY SINE Alu -179 132 1 447 125 0 0 chr15 25016244 25016308 -76364213 + Charlie4a DNA MER1_type 408 471 -37 583 274 81 62 chr15 25016345 25017032 -76363489 - L1MEd LINE L1 -4682 1628 871 475 290 38 27 chr15 25017952 25018276 -76362245 + L1M4 LINE L1 4318 4657 -1489 3456 162 89 60 chr15 25018527 25018857 -76361664 - L1MB3 LINE L1 -1 6182 5863 2392 72 10 7 chr15 25018857 25019161 -76361360 - AluY SINE Alu -6 305 1 3456 162 89 60 chr15 25019161 25019490 -76361031 - L1MB3 LINE L1 -320 5863 5545 1964 142 6 19 chr15 25019490 25019801 -76360720 - AluJb SINE Alu 0 312 6 3456 162 89 60 chr15 25019801 25019939 -76360582 - L1MB3 LINE L1 -638 5545 5413 2510 139 39 24 chr15 25019939 25020407 -76360114 - L1MA9 LINE L1 -3 6309 5835 3456 162 89 60 chr15 25020407 25020806 -76359715 - L1MB3 LINE L1 -770 5413 4931 21 57 0 0 chr15 25020807 25020842 -76359679 + AT_rich Low_complexity Low_complexity 1 35 0 2191 112 3 16 chr15 25021078 25021382 -76359139 + AluSx SINE Alu 1 300 -12 2170 113 0 0 chr15 25022415 25022723 -76357798 + AluSx SINE Alu 1 308 0 237 303 37 41 chr15 25022727 25022740 -76357781 + L1MC4a LINE L1 4123 4135 -2011 1947 221 94 29 chr15 25022740 25023354 -76357167 + MLT1E1 LTR MaLR 1 654 0 237 303 37 41 chr15 25023354 25023558 -76356963 + L1MC4a LINE L1 4135 4339 -1807 2512 131 52 24 chr15 25023559 25023884 -76356637 - Tigger2a DNA MER2_type -2275 433 92 195 42 0 0 chr15 25023884 25023908 -76356613 + (GGA)n Simple_repeat Simple_repeat 3 26 0 2512 131 52 24 chr15 25023908 25024001 -76356520 - Tigger2a DNA MER2_type -2616 92 3 403 299 125 5 chr15 25024004 25024188 -76356333 - MIR SINE MIR -7 255 50 253 294 52 0 chr15 25024468 25024621 -76355900 + L1MC4a LINE L1 4883 5043 -1103 330 316 73 38 chr15 25025264 25025692 -76354829 + L1MC4a LINE L1 5260 5706 -415 285 270 98 23 chr15 25025713 25025887 -76354634 + L1MC4a LINE L1 5751 5937 -1871 219 139 0 0 chr15 25026225 25026261 -76354260 + (TA)n Simple_repeat Simple_repeat 2 37 0 270 81 0 0 chr15 25026266 25026303 -76354218 + (TG)n Simple_repeat Simple_repeat 2 38 0 1783 159 22 0 chr15 25026309 25026585 -76353936 - AluJb SINE Alu -30 282 1 287 292 30 77 chr15 25028985 25029082 -76351439 + L2 LINE L2 2613 2700 -614 2468 90 0 0 chr15 25029082 25029383 -76351138 + AluSx SINE Alu 1 301 -11 287 292 30 77 chr15 25029383 25029453 -76351068 + L2 LINE L2 2700 2772 -542 1950 131 0 24 chr15 25030260 25030551 -76349970 + AluSx SINE Alu 21 304 -8 23 33 0 0 chr15 25030551 25030581 -76349940 + AT_rich Low_complexity Low_complexity 1 30 0 477 257 129 83 chr15 25030642 25031009 -76349512 - HAL1 LINE L1 -115 2392 1999 1978 194 6 0 chr15 25031009 25031355 -76349166 - MER7A DNA MER2_type 0 346 1 477 257 129 83 chr15 25031355 25031435 -76349086 - HAL1 LINE L1 -508 1999 1924 437 228 71 16 chr15 25031436 25031620 -76348901 + HAL1 LINE L1 1716 1909 -598 1805 106 14 48 chr15 25031663 25031955 -76348566 - AluSx SINE Alu -30 282 1 318 319 200 0 chr15 25031961 25032146 -76348375 - HAL1 LINE L1 -788 1719 1498 296 254 101 63 chr15 25032149 25032338 -76348183 - L2 LINE L2 -10 3303 3108 248 255 134 34 chr15 25032511 25032750 -76347771 - HAL1 LINE L1 -1171 1336 1074 343 280 99 55 chr15 25032753 25033070 -76347451 - L1MC4 LINE L1 -27 8015 7556 2125 89 64 0 chr15 25033319 25033601 -76346920 - AluSq SINE Alu -13 300 1 806 159 8 0 chr15 25033604 25033736 -76346785 - FLAM_A SINE Alu 0 133 1 1066 282 94 54 chr15 25034657 25034765 -76345756 - L1ME3A LINE L1 -297 5873 5771 2386 78 3 0 chr15 25034765 25035058 -76345463 - AluSg SINE Alu -16 294 1 1066 282 94 54 chr15 25035058 25035780 -76344741 - L1ME3A LINE L1 -399 5771 4996 855 251 119 52 chr15 25035790 25036495 -76344026 - L1ME3A LINE L1 -1197 4949 4031 704 284 163 34 chr15 25036552 25037536 -76342985 - L1ME3A LINE L1 -2734 3412 2302 26323 31 6 0 chr15 25037738 25041652 -76338869 + L1PA4 LINE L1 2252 6175 0 262 280 128 0 chr15 25042304 25042429 -76338092 - MER117 DNA MER1_type 0 197 57 315 268 85 20 chr15 25043168 25043436 -76337085 + L1M3d LINE L1 909 1187 -4704 396 251 144 46 chr15 25043628 25043967 -76336554 + L1MEc LINE L1 1704 1991 -4549 528 273 16 44 chr15 25043967 25044150 -76336371 + HAL1 LINE L1 138 315 -2192 1998 212 75 21 chr15 25044158 25044677 -76335844 - LTR55 LTR ERV -1 547 1 1042 248 234 18 chr15 25044887 25045553 -76334968 + HAL1 LINE L1 1671 2480 -27 2401 98 0 6 chr15 25045961 25046276 -76334245 + AluSq SINE Alu 1 313 0 2140 70 10 37 chr15 25047482 25047781 -76332740 + AluY SINE Alu 1 291 -20 2835 154 90 47 chr15 25047917 25048474 -76332047 - LTR12 LTR ERV1 -133 581 1 2165 103 3 31 chr15 25048992 25049312 -76331209 - AluY SINE Alu 0 311 1 223 224 21 35 chr15 25049942 25050085 -76330436 + (TTAA)n Simple_repeat Simple_repeat 4 144 0 2148 159 118 25 chr15 25051346 25051786 -76328735 - MLT1D LTR MaLR -2 503 23 2057 122 0 3 chr15 25052196 25052490 -76328031 - AluSx SINE Alu -19 293 1 221 360 0 10 chr15 25052936 25053036 -76327485 - L3 LINE CR1 -633 944 846 624 188 0 33 chr15 25053036 25053217 -76327304 + (TCCA)n Simple_repeat Simple_repeat 3 177 0 1554 205 3 0 chr15 25053217 25053500 -76327021 - AluJb SINE Alu -28 284 1 333 283 125 18 chr15 25054182 25054454 -76326067 + L2 LINE L2 2986 3286 -27 1093 111 0 26 chr15 25054478 25054654 -76325867 + AluSg/x SINE Alu 136 307 0 217 265 94 65 chr15 25055049 25055219 -76325302 - MIR SINE MIR -42 220 46 50 0 0 0 chr15 25055416 25055466 -76325055 + AT_rich Low_complexity Low_complexity 1 50 0 302 222 12 0 chr15 25059634 25059715 -76320806 - L1MC4 LINE L1 -1346 6696 6615 347 196 11 76 chr15 25059781 25059873 -76320648 - MER81 DNA DNA -2 112 27 1243 196 0 14 chr15 25062281 25062501 -76318020 + MER101B LTR ERV1 1 217 -353 765 214 22 45 chr15 25062836 25063014 -76317507 - MER82 DNA MER2_type -472 181 8 2362 163 216 161 chr15 25063020 25063264 -76317257 + L1MD3 LINE L1 6659 6888 -1107 444 19 0 0 chr15 25063264 25063317 -76317204 + (CA)n Simple_repeat Simple_repeat 2 54 0 2362 163 216 161 chr15 25063317 25063686 -76316835 + L1MD3 LINE L1 6888 7235 -760 604 230 36 7 chr15 25063686 25063825 -76316696 + MLT1A1 LTR MaLR 6 148 -419 2362 163 216 161 chr15 25063825 25064241 -76316280 + L1MD3 LINE L1 7235 7891 -104 2787 150 27 16 chr15 25064891 25065378 -76315143 + L1MB3 LINE L1 5584 6075 -108 228 299 141 4 chr15 25065780 25066014 -76314507 + L2 LINE L2 2138 2403 -911 589 250 42 32 chr15 25067544 25067791 -76312730 - MER4C LTR ERV1 0 597 325 948 95 7 7 chr15 25068121 25068258 -76312263 + MLT1A1 LTR MaLR 1 137 -228 3785 194 70 36 chr15 25068280 25069104 -76311417 + MER21B LTR ERV1 12 863 0 1229 164 26 17 chr15 25069114 25069345 -76311176 + MLT1A1 LTR MaLR 133 365 0 386 291 94 24 chr15 25069345 25069623 -76310898 + MLT1L LTR MaLR 57 461 -154 1365 206 120 59 chr15 25069693 25070169 -76310352 - MLT1D LTR MaLR 0 505 1 36 23 0 0 chr15 25070215 25070258 -76310263 + AT_rich Low_complexity Low_complexity 1 43 0 1503 114 4 92 chr15 25070533 25070806 -76309715 - AluJb SINE Alu -14 298 50 2097 92 3 46 chr15 25070846 25071151 -76309370 + AluSx SINE Alu 1 292 -20 2550 154 31 1 chr15 25072931 25073574 -76306947 - L1PA13 LINE L1 -626 5539 4874 3788 121 40 8 chr15 25073577 25074182 -76306339 + L1PA13 LINE L1 5540 6163 0 1138 272 175 18 chr15 25076690 25077303 -76303218 - L1ME4a LINE L1 -57 6064 5356 269 289 157 25 chr15 25077545 25077666 -76302855 + MIR SINE MIR 46 182 -80 794 238 121 0 chr15 25077738 25077978 -76302543 + MLT1F1 LTR MaLR 299 567 0 216 100 0 0 chr15 25077980 25078010 -76302511 + MIR SINE MIR 196 225 -37 714 256 102 63 chr15 25078037 25078498 -76302023 + MLT1H LTR MaLR 71 549 0 3782 128 2 6 chr15 25078710 25079239 -76301282 + MER1A DNA MER1_type 1 527 0 2581 171 89 0 chr15 25081041 25081514 -76299007 - MLT2B2 LTR ERVL 0 515 1 1527 171 14 31 chr15 25083030 25083317 -76297204 + AluJo SINE Alu 1 282 -30 2016 103 3 3 chr15 25083416 25083730 -76296791 + AluSx SINE Alu 3 316 0 3483 130 27 30 chr15 25084491 25084541 -76295980 - L1MB3 LINE L1 -3 6180 6131 1848 135 24 0 chr15 25084541 25084838 -76295683 - AluSg SINE Alu -6 304 1 3483 130 27 30 chr15 25084838 25085389 -76295132 - L1MB3 LINE L1 -52 6131 5581 1981 111 0 4 chr15 25085401 25085701 -76294820 + AluSq SINE Alu 10 308 0 322 280 70 14 chr15 25086450 25086593 -76293928 + L1MB8 LINE L1 6027 6177 -1 2942 190 26 3 chr15 25086721 25087301 -76293220 + L1MB3 LINE L1 5591 6183 0 370 306 214 20 chr15 25087525 25087777 -76292744 + L3 LINE CR1 192 492 -1085 253 245 50 86 chr15 25087950 25088089 -76292432 + L3 LINE CR1 743 876 -701 22 35 0 0 chr15 25088802 25088831 -76291690 + AT_rich Low_complexity Low_complexity 1 29 0 355 231 0 0 chr15 25089062 25089127 -76291394 - L2 LINE L2 0 3272 3208 291 288 38 38 chr15 25089324 25089456 -76291065 - L2 LINE L2 -583 2731 2600 2101 114 3 0 chr15 25091394 25091693 -76288828 + AluSq SINE Alu 1 300 -13 25 31 0 0 chr15 25091952 25091984 -76288537 + AT_rich Low_complexity Low_complexity 1 32 0 1784 143 30 50 chr15 25092147 25092248 -76288273 + L1MB3 LINE L1 5824 5925 -258 2201 94 0 7 chr15 25092248 25092565 -76287956 - AluSx SINE Alu 0 312 1 1784 143 30 50 chr15 25092565 25092826 -76287695 + L1MB3 LINE L1 5925 6179 -4 30 0 0 0 chr15 25092827 25092857 -76287664 + AT_rich Low_complexity Low_complexity 1 30 0 239 289 28 42 chr15 25093583 25093725 -76286796 - MER117 DNA MER1_type -38 159 20 27 32 0 32 chr15 25095457 25095476 -76285045 + AT_rich Low_complexity Low_complexity 1 19 -42 487 0 32 0 chr15 25095476 25095539 -76284982 + (CA)n Simple_repeat Simple_repeat 2 66 0 2215 81 0 0 chr15 25095545 25095830 -76284691 - AluSx SINE Alu -27 285 1 27 32 0 32 chr15 25095830 25095866 -76284655 + AT_rich Low_complexity Low_complexity 24 61 0 496 269 85 40 chr15 25096450 25096673 -76283848 - Charlie8 DNA MER1_type -2184 233 1 2031 135 0 6 chr15 25097611 25097922 -76282599 - AluSx SINE Alu -3 309 1 2158 240 64 18 chr15 25099834 25100487 -76280034 + L1ME3A LINE L1 5488 6170 0 910 237 25 29 chr15 25100966 25101059 -76279462 - MER33 DNA MER1_type -2264 321 229 243 0 0 0 chr15 25101059 25101086 -76279435 + (TA)n Simple_repeat Simple_repeat 1 27 0 2450 56 0 10 chr15 25101086 25101392 -76279129 - AluY SINE Alu -8 303 1 910 237 25 29 chr15 25101392 25101515 -76279006 - MER33 DNA MER1_type -2355 230 108 1671 164 40 95 chr15 25101515 25101688 -76278833 + MSTB LTR MaLR 1 182 -244 1818 84 0 0 chr15 25101688 25101925 -76278596 + AluSq SINE Alu 1 237 -76 1671 164 40 95 chr15 25101925 25101978 -76278543 + MSTB LTR MaLR 182 236 -190 2425 44 0 41 chr15 25101978 25102293 -76278228 + AluY SINE Alu 1 302 -9 1671 164 40 95 chr15 25102293 25102516 -76278005 + MSTB LTR MaLR 236 426 0 910 237 25 29 chr15 25102516 25102576 -76277945 - MER33 DNA MER1_type -2477 108 44 306 132 0 0 chr15 25102668 25102721 -76277800 + (TC)n Simple_repeat Simple_repeat 2 54 0 423 56 0 0 chr15 25102721 25102775 -76277746 + (CA)n Simple_repeat Simple_repeat 1 54 0 542 307 77 38 chr15 25102824 25103163 -76277358 + MLT1K LTR MaLR 237 588 0 243 0 0 0 chr15 25103404 25103431 -76277090 + (A)n Simple_repeat Simple_repeat 1 27 0 437 268 150 7 chr15 25104293 25104446 -76276075 - MER5A DNA MER1_type -6 183 9 21 0 0 0 chr15 25104683 25104704 -76275817 + AT_rich Low_complexity Low_complexity 1 21 0 6049 168 45 15 chr15 25104920 25105052 -76275469 - L1MC1 LINE L1 -2 6331 6204 2092 121 0 37 chr15 25105052 25105375 -76275146 - AluSq SINE Alu -2 311 1 6049 168 45 15 chr15 25105375 25106696 -76273825 - L1MC1 LINE L1 -129 6204 4829 581 246 82 10 chr15 25106713 25106908 -76273613 - L1MC1 LINE L1 -1353 4793 4585 32 26 0 0 chr15 25107164 25107203 -76273318 + AT_rich Low_complexity Low_complexity 1 39 0 205 261 0 0 chr15 25107610 25107656 -76272865 + (CA)n Simple_repeat Simple_repeat 2 47 0 909 270 92 57 chr15 25108133 25108674 -76271847 + L1MB5 LINE L1 8 567 -5975 3597 130 9 65 chr15 25108700 25109379 -76271142 + L1MA5 LINE L1 5268 5908 -392 2751 134 23 48 chr15 25109425 25109476 -76271045 + L1MA5 LINE L1 5793 5844 -456 2054 118 3 0 chr15 25109476 25109780 -76270741 + AluSx SINE Alu 3 307 -5 2751 134 23 48 chr15 25109780 25110249 -76270272 + L1MA5 LINE L1 5844 6300 0 2793 234 66 66 chr15 25110273 25110760 -76269761 + L1MB5 LINE L1 592 1077 -5595 1908 155 0 0 chr15 25110760 25111057 -76269464 - AluSx SINE Alu -14 298 2 2793 234 66 66 chr15 25111057 25112196 -76268325 + L1MB5 LINE L1 1077 6664 -8 3879 169 113 64 chr15 25113160 25114498 -76266023 - pTR5 LTR ERV1 0 2438 743 197 319 33 22 chr15 25115242 25115333 -76265188 + MIR SINE MIR 95 186 -76 2117 108 3 0 chr15 25115787 25116082 -76264439 + AluSx SINE Alu 1 296 -16 1969 114 3 7 chr15 25116151 25116440 -76264081 + AluSx SINE Alu 1 288 -24 254 282 157 14 chr15 25116446 25116662 -76263859 + L1P LINE L1 4053 4299 -1847 5201 179 38 41 chr15 25116824 25118832 -76261689 - L1MA9 LINE L1 -1 7730 5719 217 0 61 0 chr15 25118832 25118865 -76261656 + (TAAAA)n Simple_repeat Simple_repeat 4 38 0 5201 179 38 41 chr15 25118865 25119397 -76261124 - L1MA9 LINE L1 -2012 5719 5187 1769 184 111 8 chr15 25119397 25119756 -76260765 + MSTD LTR MaLR 1 396 0 5201 179 38 41 chr15 25119756 25120411 -76260110 - L1MA9 LINE L1 -2544 5187 4532 1688 158 79 22 chr15 25120411 25120766 -76259755 + THE1C LTR MaLR 1 375 0 5201 179 38 41 chr15 25120766 25121844 -76258677 - L1MA9 LINE L1 -3199 4532 3323 1512 190 31 3 chr15 25121844 25122133 -76258388 - AluJo SINE Alu -15 297 1 5201 179 38 41 chr15 25122133 25122163 -76258358 - L1MA9 LINE L1 -4408 3323 3294 10769 209 61 18 chr15 25122194 25126066 -76254455 + L1MB7 LINE L1 2120 6167 -17 852 209 95 41 chr15 25126081 25126397 -76254124 + MER69 DNA AcHobo 2138 2470 -56 431 298 121 15 chr15 25126429 25126715 -76253806 + L1ME LINE L1 5429 5638 -528 31566 103 7 12 chr15 25127606 25133000 -76247521 + L1PA7 LINE L1 700 6091 -378 2247 60 3 18 chr15 25133000 25133282 -76247239 + AluY SINE Alu 19 296 -15 31566 103 7 12 chr15 25133282 25133659 -76246862 + L1PA7 LINE L1 6091 6468 -1 2019 122 42 0 chr15 25133787 25134074 -76246447 - AluSx SINE Alu -1 311 13 1077 66 7 0 chr15 25134174 25134310 -76246211 + L1PA7 LINE L1 6017 6153 -1 1698 141 67 20 chr15 25134438 25134735 -76245786 - AluSx SINE Alu -1 311 1 372 246 131 8 chr15 25134920 25135050 -76245471 - MER104 DNA Tc2 -14 166 21 402 258 80 13 chr15 25135241 25135392 -76245129 + MER69A DNA AcHobo 13 173 -4 2006 164 49 27 chr15 25135559 25135925 -76244596 + MLT1A2 LTR MaLR 1 374 0 316 262 115 25 chr15 25136946 25137068 -76243453 - L2 LINE L2 0 3313 3181 3023 141 58 0 chr15 25137180 25137662 -76242859 - L1MB2 LINE L1 -2 6169 5660 988 210 223 3 chr15 25138407 25138654 -76241867 - MLT2B2 LTR ERVL -181 233 1 786 201 187 10 chr15 25138654 25138863 -76241658 + MLT1D LTR MaLR 322 505 0 898 242 41 0 chr15 25138951 25139145 -76241376 + MER3 DNA MER1_type 4 205 -4 818 216 11 28 chr15 25139156 25139337 -76241184 + MER5B DNA MER1_type 1 178 0 245 179 128 51 chr15 25140090 25140168 -76240353 + HAL1b LINE L1 604 687 -661 574 258 109 45 chr15 25140347 25140568 -76239953 - MIR SINE MIR -27 235 1 865 173 24 18 chr15 25140890 25141058 -76239463 - L1MA9 LINE L1 0 6312 6144 1154 184 148 0 chr15 25141064 25141338 -76239183 + AluJo SINE Alu 2 311 0 683 157 0 0 chr15 25141341 25141456 -76239065 - L1MA9 LINE L1 -178 6134 6020 204 40 0 0 chr15 25142244 25142269 -76238252 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 231 36 0 0 chr15 25142268 25142296 -76238225 + (CA)n Simple_repeat Simple_repeat 1 28 0 471 157 0 0 chr15 25142368 25142438 -76238083 - MER8 DNA MER2_type 0 239 170 * 2736 131 18 31 chr15 25142421 25142840 -76237681 + Tigger2 DNA MER2_type 2267 2681 -37 1588 175 133 30 chr15 25142840 25143245 -76237276 + LTR7 LTR ERV1 3 449 -1 2736 131 18 31 chr15 25143245 25143283 -76237238 + Tigger2 DNA MER2_type 2681 2718 0 1683 241 27 31 chr15 25143787 25144113 -76236408 + L1M4 LINE L1 4256 4581 -1565 1143 188 14 36 chr15 25144113 25144336 -76236185 + MER20B DNA MER1_type 2 219 0 1683 241 27 31 chr15 25144336 25144494 -76236027 + L1M4 LINE L1 4581 4738 -1408 1750 222 102 14 chr15 25144992 25145501 -76235020 + L1M4 LINE L1 4747 5300 -846 3136 224 21 34 chr15 25145501 25146278 -76234243 + L1MB7 LINE L1 3 769 -5773 4538 182 70 52 chr15 25146282 25147528 -76232993 + L1MB7 LINE L1 4704 5928 -736 5365 105 68 7 chr15 25147528 25148263 -76232258 - LTR17 LTR ERV1 0 780 1 4538 182 70 52 chr15 25148263 25148962 -76231559 + L1MB7 LINE L1 5928 6614 -50 1743 149 20 40 chr15 25149577 25149879 -76230642 - AluJo SINE Alu -16 296 1 379 316 106 28 chr15 25149965 25150389 -76230132 + L2 LINE L2 1820 2276 -1038 288 292 188 0 chr15 25151122 25151266 -76229255 - L2 LINE L2 0 3272 3102 491 294 0 0 chr15 25152350 25152527 -76227994 + G-rich Low_complexity Low_complexity 1 177 0 1448 198 29 3 chr15 25152670 25152983 -76227538 - MER74A LTR ERVL -222 336 16 764 288 171 16 chr15 25153686 25154137 -76226384 + MER20B DNA MER1_type 213 733 -50 1239 110 48 118 chr15 25154870 25154978 -76225543 - L1MA8 LINE L1 -5 6286 6172 2036 129 0 0 chr15 25154978 25155265 -76225256 - AluSx SINE Alu -25 287 1 1239 110 48 118 chr15 25155265 25155468 -76225053 - L1MA8 LINE L1 -119 6172 6013 285 29 0 0 chr15 25157406 25157440 -76223081 + (A)n Simple_repeat Simple_repeat 1 34 0 794 165 0 0 chr15 25208699 25208820 -76171701 + FLAM_A SINE Alu 1 121 -12 499 314 116 59 chr15 25208912 25209260 -76171261 + L1MC4a LINE L1 4161 4547 -1599 2122 121 7 0 chr15 25209260 25209565 -76170956 + AluSx SINE Alu 1 307 -5 499 314 116 59 chr15 25209565 25209709 -76170812 + L1MC4a LINE L1 4547 4681 -1465 1377 246 81 38 chr15 25209761 25210256 -76170265 + MLT1H1 LTR MaLR 38 553 -2 521 155 16 16 chr15 25210266 25210279 -76170242 + GA-rich Low_complexity Low_complexity 3 15 -116 2230 81 0 7 chr15 25210279 25210575 -76169946 + AluSg SINE Alu 1 294 -16 521 155 16 16 chr15 25210575 25210690 -76169831 + GA-rich Low_complexity Low_complexity 14 131 0 386 281 294 0 chr15 25210751 25210979 -76169542 - L2 LINE L2 -4 3309 3015 347 295 127 27 chr15 25210994 25211363 -76169158 + L1MC4a LINE L1 5518 5923 -1885 23 0 0 0 chr15 25211682 25211705 -76168816 + AT_rich Low_complexity Low_complexity 1 23 0 1684 135 11 18 chr15 25212220 25212501 -76168020 + AluJo SINE Alu 1 279 -33 220 180 24 18 chr15 25212611 25212666 -76167855 - MIR SINE MIR -52 156 98 250 140 20 20 chr15 25214250 25214300 -76166221 - MIR SINE MIR -115 147 98 1687 135 12 55 chr15 25216213 25216539 -76163982 - AluJo SINE Alu 0 312 1 216 263 100 38 chr15 25216590 25216670 -76163851 - L2 LINE L2 -32 3281 3197 394 310 9 0 chr15 25217283 25217399 -76163122 + MLT1H LTR MaLR 108 224 -325 313 267 95 43 chr15 25217399 25217515 -76163006 - MIR SINE MIR -132 130 9 279 0 0 0 chr15 25218071 25218102 -76162419 + (TG)n Simple_repeat Simple_repeat 2 32 0 2017 120 0 3 chr15 25218191 25218483 -76162038 + AluSq SINE Alu 1 291 -22 2031 91 3 21 chr15 25218485 25218797 -76161724 + AluY SINE Alu 1 307 0 2392 63 7 0 chr15 25218964 25219267 -76161254 - AluY SINE Alu -6 305 1 269 298 67 0 chr15 25219415 25219519 -76161002 - L1ME LINE L1 -357 5813 5703 415 313 74 44 chr15 25219546 25219843 -76160678 - L1ME LINE L1 -459 5662 5357 370 260 0 32 chr15 25219871 25219994 -76160527 - L1ME LINE L1 -1567 4579 4461 22 35 0 0 chr15 25220998 25221027 -76159494 + AT_rich Low_complexity Low_complexity 1 29 0 222 37 0 0 chr15 25221077 25221104 -76159417 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1786 132 3 21 chr15 25221107 25221395 -76159126 - AluSx SINE Alu -25 287 5 456 285 72 101 chr15 25221405 25221861 -76158660 + L1MDb LINE L1 1148 1697 -1070 1733 173 3 3 chr15 25221861 25222167 -76158354 + AluJb SINE Alu 5 310 -2 456 285 72 101 chr15 25222167 25222208 -76158313 + L1MDb LINE L1 1697 1738 -1029 1981 260 58 73 chr15 25222338 25223216 -76157305 - L1MC4 LINE L1 -6 8036 7146 180 0 0 0 chr15 25223216 25223236 -76157285 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1981 260 58 73 chr15 25223236 25223256 -76157265 - L1MC4 LINE L1 -896 7146 7127 2221 73 0 3 chr15 25223256 25223542 -76156979 - AluY SINE Alu -26 285 1 1981 260 58 73 chr15 25223542 25223602 -76156919 - L1MC4 LINE L1 -915 7127 7090 201 94 0 0 chr15 25223602 25223634 -76156887 + (TATG)n Simple_repeat Simple_repeat 1 32 0 1792 149 17 3 chr15 25223645 25223941 -76156580 - L1M2 LINE L1 -612 5700 5401 772 243 27 0 chr15 25223941 25224089 -76156432 - MER58A DNA MER1_type 0 152 1 388 331 238 5 chr15 25224577 25224955 -76155566 + L2 LINE L2 2257 2722 -592 2314 193 52 4 chr15 25225044 25225525 -76154996 + MLT1D LTR MaLR 1 504 -1 347 271 33 49 chr15 25225751 25225873 -76154648 - MIR SINE MIR -9 253 134 2085 146 108 28 chr15 25225873 25226180 -76154341 - Tigger2 DNA MER2_type 0 2718 2372 186 43 0 0 chr15 25226180 25226203 -76154318 + (GGA)n Simple_repeat Simple_repeat 2 24 0 2085 146 108 28 chr15 25226203 25226285 -76154236 - Tigger2 DNA MER2_type -346 2372 2298 545 161 5 38 chr15 25226304 25226490 -76154031 + GA-rich Low_complexity Low_complexity 1 180 0 207 256 0 37 chr15 25226558 25226640 -76153881 + (GTTTG)n Simple_repeat Simple_repeat 5 83 0 291 54 0 0 chr15 25227963 25228000 -76152521 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 263 308 48 10 chr15 25228049 25228153 -76152368 - L2 LINE L2 -52 3261 3154 187 274 226 0 chr15 25228173 25228275 -76152246 - L2 LINE L2 -8 3305 3181 307 351 58 0 chr15 25228366 25228537 -76151984 - L2 LINE L2 -610 2704 2524 731 189 44 9 chr15 25228823 25229049 -76151472 - MER57A LTR ERV1 0 403 201 359 183 49 12 chr15 25229034 25229116 -76151405 - LTR54 LTR ERV1 -271 239 155 * 424 81 16 0 chr15 25229116 25229178 -76151343 + (TC)n Simple_repeat Simple_repeat 2 64 0 761 163 95 0 chr15 25229205 25229352 -76151169 - LTR54 LTR ERV1 -345 165 5 313 241 25 13 chr15 25229495 25229574 -76150947 + GA-rich Low_complexity Low_complexity 3 82 0 2205 127 0 3 chr15 25229781 25230088 -76150433 - AluSc SINE Alu -3 306 1 5624 191 45 28 chr15 25230844 25232304 -76148217 + L1MB3 LINE L1 3982 5415 -768 2450 67 3 3 chr15 25232304 25232602 -76147919 - AluY SINE Alu -13 298 1 5624 191 45 28 chr15 25232602 25232809 -76147712 + L1MB3 LINE L1 5415 5617 -566 333 0 0 0 chr15 25232809 25232846 -76147675 + (TG)n Simple_repeat Simple_repeat 1 37 0 5624 191 45 28 chr15 25232846 25232869 -76147652 + L1MB3 LINE L1 5617 5638 -545 1720 178 0 0 chr15 25232869 25233133 -76147388 - AluJb SINE Alu -32 280 17 5624 191 45 28 chr15 25233133 25233612 -76146909 + L1MB3 LINE L1 5638 6183 0 1456 165 26 0 chr15 25233607 25233873 -76146648 + L1M3 LINE L1 5428 5700 -480 * 265 241 130 37 chr15 25234177 25234285 -76146236 + L2 LINE L2 3187 3304 -9 1934 136 0 52 chr15 25235008 25235194 -76145327 - AluSx SINE Alu -5 307 144 2585 71 0 0 chr15 25235194 25235505 -76145016 - AluY SINE Alu 0 311 1 1934 136 0 52 chr15 25235505 25235642 -76144879 - AluSx SINE Alu -168 144 1 495 242 33 0 chr15 25235831 25235951 -76144570 + MIR SINE MIR 139 262 0 916 182 17 22 chr15 25236879 25237060 -76143461 - MLT2D LTR ERVL -234 180 1 1890 215 20 51 chr15 25237072 25237438 -76143083 + L1M4 LINE L1 4484 4829 -1317 1573 107 5 9 chr15 25237438 25237654 -76142867 - AluSg/x SINE Alu -13 297 83 1890 215 20 51 chr15 25237654 25237840 -76142681 + L1M4 LINE L1 4829 5019 -1127 606 309 55 60 chr15 25237963 25238129 -76142392 + HAL1b LINE L1 73 238 -1110 2274 94 3 0 chr15 25238129 25238444 -76142077 - AluSg SINE Alu 0 316 1 606 309 55 60 chr15 25238444 25238744 -76141777 + HAL1b LINE L1 238 539 -809 2947 82 13 0 chr15 25238749 25239140 -76141381 + L1PA10 LINE L1 5757 6152 -16 24 0 0 0 chr15 25239142 25239166 -76141355 + AT_rich Low_complexity Low_complexity 1 24 0 1594 169 29 88 chr15 25239341 25239796 -76140725 + L1MB7 LINE L1 4946 5373 -773 3557 146 51 2 chr15 25239800 25239923 -76140598 + L1MA9 LINE L1 5653 5768 -544 258 105 0 0 chr15 25239923 25239961 -76140560 + (TG)n Simple_repeat Simple_repeat 1 38 0 3557 146 51 2 chr15 25239961 25240466 -76140055 + L1MA9 LINE L1 5768 6312 0 371 56 19 0 chr15 25240484 25240538 -76139983 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 4266 160 23 27 chr15 25240867 25241070 -76139451 + L1MB7 LINE L1 5366 5568 -616 2613 56 0 0 chr15 25241070 25241375 -76139146 + AluY SINE Alu 1 305 -6 4266 160 23 27 chr15 25241375 25241988 -76138533 + L1MB7 LINE L1 5568 6179 -5 1113 141 32 2 chr15 25242025 25242273 -76138248 + AluSx SINE Alu 2 309 -1 1650 232 99 92 chr15 25242560 25242634 -76137887 + L1MC5 LINE L1 6541 6613 -1348 468 0 0 0 chr15 25242634 25242686 -76137835 + (TG)n Simple_repeat Simple_repeat 2 53 0 1650 232 99 92 chr15 25242686 25243159 -76137362 + L1MC5 LINE L1 6613 7108 -853 2090 129 7 3 chr15 25243159 25243454 -76137067 - AluSx SINE Alu -16 296 1 1650 232 99 92 chr15 25243454 25243771 -76136750 + L1MC5 LINE L1 7108 7421 -540 1057 133 0 0 chr15 25243826 25243977 -76136544 + AluSg/x SINE Alu 146 296 -16 515 248 7 0 chr15 25243986 25244139 -76136382 + GA-rich Low_complexity Low_complexity 4 157 0 1930 135 40 10 chr15 25244212 25244515 -76136006 + AluJb SINE Alu 1 312 0 308 314 25 38 chr15 25244645 25244804 -76135717 + L1ME3A LINE L1 6013 6169 -1 273 301 152 2 chr15 25245251 25245399 -76135122 + MIR SINE MIR 16 182 -62 2522 73 0 3 chr15 25245896 25246209 -76134312 + AluSx SINE Alu 1 312 0 883 220 17 0 chr15 25246937 25247107 -76133414 + MLT1C LTR MaLR 1 173 -217 1020 151 58 16 chr15 25247107 25247394 -76133127 + AluJo SINE Alu 1 353 0 998 222 32 5 chr15 25247426 25247642 -76132879 + MLT1C LTR MaLR 246 467 0 930 238 110 12 chr15 25247810 25248129 -76132392 - MSTD LTR MaLR 0 396 21 2605 116 16 49 chr15 25248129 25248576 -76131945 + MSTB1 LTR MaLR 1 432 0 930 238 110 12 chr15 25248576 25248600 -76131921 - MSTD LTR MaLR -375 21 1 300 182 61 0 chr15 25248769 25248835 -76131686 + LTR50 LTR ERVL 1 70 -725 251 299 106 23 chr15 25248873 25249090 -76131431 + L2 LINE L2 666 900 -2414 1289 224 131 8 chr15 25249242 25249608 -76130913 + L1MD2 LINE L1 5949 6359 0 231 333 138 8 chr15 25249985 25250108 -76130413 + L2 LINE L2 3134 3272 0 1356 157 39 74 chr15 25250152 25250176 -76130345 - L1MC3 LINE L1 0 7785 7762 1800 125 14 54 chr15 25250176 25250314 -76130207 + AluSx SINE Alu 1 143 -167 2339 43 0 7 chr15 25250314 25250593 -76129928 + AluY SINE Alu 35 311 0 1800 125 14 54 chr15 25250593 25250776 -76129745 + AluSx SINE Alu 143 310 0 1356 157 39 74 chr15 25250776 25251087 -76129434 - L1MC3 LINE L1 -23 7762 7461 4053 163 59 131 chr15 25251098 25251631 -76128890 - L1MC3 LINE L1 -658 7127 6557 299 65 22 0 chr15 25251631 25251677 -76128844 + MADE1 DNA Mariner 1 47 -33 4053 163 59 131 chr15 25251677 25252159 -76128362 - L1MC3 LINE L1 -1228 6557 6172 2039 147 0 7 chr15 25252159 25252465 -76128056 - AluSx SINE Alu -8 304 1 4053 163 59 131 chr15 25252465 25252689 -76127832 - L1MC3 LINE L1 -1613 6172 5934 1411 116 5 0 chr15 25252789 25252996 -76127525 + AluSp SINE Alu 90 297 -16 2361 160 21 36 chr15 25252996 25253253 -76127268 - L1MC3 LINE L1 -1928 5857 5609 1798 161 3 7 chr15 25253253 25253552 -76126969 + AluJb SINE Alu 1 298 -14 2361 160 21 36 chr15 25253552 25253762 -76126759 - L1MC3 LINE L1 -2176 5609 5397 2598 64 0 0 chr15 25254098 25254409 -76126112 - AluY SINE Alu 0 311 1 285 280 21 0 chr15 25254934 25255027 -76125494 + MIR SINE MIR 59 153 -109 383 289 128 50 chr15 25255100 25255342 -76125179 + Charlie8 DNA MER1_type 6 266 -2151 436 32 16 16 chr15 25255850 25255913 -76124608 + (CAT)n Simple_repeat Simple_repeat 1 63 0 760 192 0 0 chr15 25256059 25256184 -76124337 - FLAM_A SINE Alu -8 125 1 3841 150 147 107 chr15 25256206 25256306 -76124215 - Tigger6a DNA MER2_type -514 1083 988 2705 36 0 0 chr15 25256306 25256610 -76123911 - AluY SINE Alu -7 304 1 3841 150 147 107 chr15 25256610 25257550 -76122971 - Tigger6a DNA MER2_type -609 988 1 286 255 7 111 chr15 25257550 25257703 -76122818 + L2 LINE L2 3169 3305 -8 24 0 0 0 chr15 25257931 25257955 -76122566 + AT_rich Low_complexity Low_complexity 1 24 0 1356 120 0 0 chr15 25257955 25258139 -76122382 - AluSg/x SINE Alu -16 294 111 297 212 0 15 chr15 25258310 25258376 -76122145 - L2 LINE L2 -301 2971 2907 578 246 50 17 chr15 25258683 25258862 -76121659 + MER5A DNA MER1_type 3 187 -2 2178 125 0 0 chr15 25259055 25259352 -76121169 - AluSx SINE Alu -15 297 1 358 277 190 39 chr15 25259496 25259806 -76120715 + L1ME LINE L1 5258 5617 -504 320 267 10 10 chr15 25260831 25260932 -76119589 - L1MC4a LINE L1 -1893 5915 5815 2125 114 10 3 chr15 25260968 25261265 -76119256 + AluSx SINE Alu 1 299 -13 272 287 140 15 chr15 25261270 25261406 -76119115 - L1ME3A LINE L1 -30 6140 5988 303 174 96 43 chr15 25261521 25261636 -76118885 - L1MC5 LINE L1 -431 7530 7410 2039 101 0 7 chr15 25261638 25261914 -76118607 - AluSc SINE Alu -2 307 34 260 294 50 102 chr15 25261937 25262235 -76118286 - HAL1b LINE L1 -809 539 277 1897 137 4 14 chr15 25262235 25262538 -76117983 - AluSx SINE Alu 0 308 9 260 294 50 102 chr15 25262538 25262758 -76117763 - HAL1b LINE L1 -1071 277 47 3160 64 52 9 chr15 25263171 25263205 -76117316 - MLT2A1 LTR ERVL -6 438 407 497 89 25 0 chr15 25263205 25263284 -76117237 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 3160 64 52 9 chr15 25263284 25263669 -76116852 - MLT2A1 LTR ERVL -37 407 1 2245 64 0 44 chr15 25263936 25264280 -76116241 - AluY SINE Alu 0 331 1 368 164 15 0 chr15 25264680 25264747 -76115774 - L1MC4a LINE L1 -2035 5773 5706 956 205 252 20 chr15 25264752 25265054 -76115467 + MSTD LTR MaLR 1 372 -24 375 164 44 3 chr15 25265086 25265166 -76115355 + MSTD LTR MaLR 324 396 0 184 256 205 0 chr15 25265467 25265545 -76114976 - L2 LINE L2 -38 3234 3141 471 187 79 50 chr15 25268564 25268703 -76111818 + LTR45B LTR ERV1 342 484 -5 338 183 0 0 chr15 25269867 25269927 -76110594 + L2 LINE L2 3251 3310 -3 813 153 0 0 chr15 25270188 25270306 -76110215 + FLAM_C SINE Alu 1 118 -25 2249 112 7 0 chr15 25270563 25270867 -76109654 - AluSx SINE Alu -6 306 1 2667 180 13 42 chr15 25272135 25272206 -76108315 - MLT2B2 LTR ERVL 0 515 443 1985 119 51 14 chr15 25272206 25272500 -76108021 + AluSx SINE Alu 1 305 -7 2667 180 13 42 chr15 25272500 25272951 -76107570 - MLT2B2 LTR ERVL -72 443 8 2351 97 0 3 chr15 25273555 25273854 -76106667 + AluSg SINE Alu 1 298 -12 521 279 113 22 chr15 25274465 25274524 -76105997 - MIR SINE MIR -6 256 204 2272 104 0 3 chr15 25274524 25274823 -76105698 + AluY SINE Alu 1 298 -13 521 279 113 22 chr15 25274823 25274985 -76105536 - MIR SINE MIR -58 204 15 797 246 123 29 chr15 25275424 25275898 -76104623 - MLT2F LTR ERVL -23 640 98 1077 169 0 0 chr15 25275905 25276077 -76104444 + FRAM SINE Alu 1 172 -4 1171 53 0 0 chr15 25276521 25276654 -76103867 + AluY SINE Alu 1 133 -178 2595 55 3 3 chr15 25276655 25276964 -76103557 + AluY SINE Alu 1 309 -2 2470 187 118 42 chr15 25276973 25277598 -76102923 + L1MB1 LINE L1 5446 6118 -50 1228 102 0 18 chr15 25277699 25277865 -76102656 - AluSq SINE Alu -150 163 1 514 294 37 27 chr15 25278723 25278910 -76101611 - MIR SINE MIR -65 197 9 1606 73 9 18 chr15 25279177 25279395 -76101126 - AluSq SINE Alu -97 216 1 233 233 0 0 chr15 25279670 25279713 -76100808 + (CA)n Simple_repeat Simple_repeat 2 44 0 2580 215 92 42 chr15 25280012 25280229 -76100292 - L1MD2 LINE L1 -3 6750 6545 333 0 0 0 chr15 25280229 25280266 -76100255 + (TG)n Simple_repeat Simple_repeat 2 38 0 2580 215 92 42 chr15 25280266 25280754 -76099767 - L1MD2 LINE L1 -208 6545 5993 2011 128 3 0 chr15 25280754 25281050 -76099471 - AluSx SINE Alu -13 299 3 2580 215 92 42 chr15 25281050 25281195 -76099326 - L1MD2 LINE L1 -760 5993 5857 1579 122 50 4 chr15 25281205 25281467 -76099054 - AluSx SINE Alu -1 311 38 1281 217 97 26 chr15 25281485 25281587 -76098934 - L1MD2 LINE L1 -1794 4746 4653 2347 128 34 0 chr15 25281587 25281939 -76098582 + THE1B LTR MaLR 1 364 0 1281 217 97 26 chr15 25281939 25282219 -76098302 - L1MD2 LINE L1 -1887 4653 4337 554 250 61 0 chr15 25282333 25282529 -76097992 - L1MD2 LINE L1 -3003 3537 3330 4097 169 39 34 chr15 25282560 25282620 -76097901 - L1MB4 LINE L1 -41 6139 6081 2320 84 0 0 chr15 25282620 25282918 -76097603 + AluSc SINE Alu 1 298 -11 4097 169 39 34 chr15 25282918 25283733 -76096788 - L1MB4 LINE L1 -99 6081 5260 * 5303 238 89 65 chr15 25283727 25284110 -76096411 - L1MD2 LINE L1 -3351 3189 2816 1894 152 0 0 chr15 25284110 25284407 -76096114 - AluSx SINE Alu -15 297 1 5303 238 89 65 chr15 25284407 25285192 -76095329 - L1MD2 LINE L1 -3724 2816 2051 1978 139 3 0 chr15 25285192 25285501 -76095020 + AluSx SINE Alu 1 310 -2 5303 238 89 65 chr15 25285501 25286032 -76094489 - L1MD2 LINE L1 -4489 2051 1534 1928 109 20 7 chr15 25286032 25286326 -76094195 - AluSx SINE Alu -1 311 14 5303 238 89 65 chr15 25286326 25287689 -76092832 - L1MD2 LINE L1 -5006 1534 41 1744 132 0 29 chr15 25287857 25288137 -76092384 + AluSq SINE Alu 1 272 -41 2072 95 31 0 chr15 25289036 25289330 -76091191 + AluSx SINE Alu 1 303 -9 2208 152 40 71 chr15 25289800 25290279 -76090242 - MER21A LTR ERV1 -9 922 459 1490 64 9 36 chr15 25290281 25290500 -76090021 - AluY SINE Alu -98 213 1 1195 173 240 0 chr15 25290501 25290755 -76089766 - MER21B LTR ERV1 -548 315 1 265 280 51 42 chr15 25291800 25291918 -76088603 + MLT1H LTR MaLR 433 536 -13 416 264 42 0 chr15 25293045 25293189 -76087332 - MLT2E LTR ERVL -9 619 470 615 227 87 35 chr15 25293269 25293441 -76087080 - MLT2E LTR ERVL -318 310 130 575 245 125 35 chr15 25293606 25293806 -76086715 - MER20 DNA MER1_type -1 218 1 426 213 37 37 chr15 25293815 25293951 -76086570 + Charlie7 DNA MER1_type 2277 2412 -200 920 151 7 0 chr15 25293952 25294098 -76086423 + AluJo SINE Alu 1 147 -165 285 115 0 0 chr15 25294777 25294829 -76085692 + L1MB4 LINE L1 6129 6180 0 7002 225 29 32 chr15 25294875 25295115 -76085406 + L1M4 LINE L1 2964 3203 -2943 2285 100 0 3 chr15 25295115 25295426 -76085095 - AluSx SINE Alu -2 310 1 7002 225 29 32 chr15 25295426 25295733 -76084788 + L1M4 LINE L1 3203 3509 -2637 1497 178 44 17 chr15 25295733 25296062 -76084459 + AluJb SINE Alu 1 312 0 7002 225 29 32 chr15 25296062 25296907 -76083614 + L1M4 LINE L1 3509 4352 -1794 2106 124 0 0 chr15 25296907 25297214 -76083307 + AluSx SINE Alu 1 307 -5 7002 225 29 32 chr15 25297214 25297804 -76082717 + L1M4 LINE L1 4352 4942 -1204 376 244 11 22 chr15 25297819 25297909 -76082612 - L1MC4 LINE L1 -1339 6703 6615 328 221 11 63 chr15 25297879 25297974 -76082547 + L1MC4 LINE L1 6614 6703 -1339 * 2071 104 0 3 chr15 25297982 25298269 -76082252 - AluSc SINE Alu -23 286 1 3592 194 74 25 chr15 25298269 25298858 -76081663 + L1MB8 LINE L1 4891 5450 -728 2274 93 3 0 chr15 25298858 25299168 -76081353 + AluY SINE Alu 1 311 0 3592 194 74 25 chr15 25299168 25299793 -76080728 + L1MB8 LINE L1 5450 6168 -10 2107 103 3 28 chr15 25299878 25300241 -76080280 + AluSx SINE Alu 1 355 0 663 197 0 58 chr15 25300285 25300422 -76080099 + FLAM_C SINE Alu 2 130 -3 2102 81 3 11 chr15 25300906 25301216 -76079305 - AluY SINE Alu 0 308 1 1997 214 49 62 chr15 25301513 25302147 -76078374 - MLT1E2 LTR MaLR 0 626 1 293 289 68 55 chr15 25303529 25303764 -76076757 + MER110-int LTR ERV1 3160 3397 -3404 2136 104 16 3 chr15 25304013 25304320 -76076201 + AluSq SINE Alu 1 311 -2 324 70 0 0 chr15 25304407 25304450 -76076071 + (CA)n Simple_repeat Simple_repeat 2 44 0 2112 123 7 0 chr15 25304796 25305142 -76075379 + AluSx SINE Alu 1 348 0 2193 119 0 0 chr15 25305668 25305978 -76074543 + AluSx SINE Alu 1 310 -2 267 135 0 0 chr15 25306048 25306085 -76074436 + AluSg/x SINE Alu 142 178 -122 1297 166 11 42 chr15 25306130 25306395 -76074126 + AluJo SINE Alu 47 303 -9 388 339 49 36 chr15 25306401 25306708 -76073813 + MER110-int LTR ERV1 2426 2736 -1911 7151 195 66 37 chr15 25306776 25308348 -76072173 + MER52A LTR ERV1 136 1753 -2 189 0 0 0 chr15 25308502 25308523 -76071998 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 2115 128 32 35 chr15 25308754 25309130 -76071391 + THE1C LTR MaLR 1 375 0 265 333 9 9 chr15 25310093 25310207 -76070314 + MER70-int LTR ERVL 4552 4665 -358 1606 242 69 10 chr15 25310560 25311083 -76069438 + L1MCc LINE L1 1002 1571 -4851 1864 149 7 0 chr15 25311103 25311404 -76069117 + AluSx SINE Alu 3 305 -7 676 244 21 50 chr15 25311418 25311587 -76068934 + L1MCc LINE L1 2279 2441 -4681 1747 175 0 3 chr15 25311587 25311884 -76068637 - AluSx SINE Alu -16 296 1 676 244 21 50 chr15 25311884 25311952 -76068569 + L1MCc LINE L1 2441 2509 -4613 * 1527 188 39 36 chr15 25311930 25312314 -76068207 + L1ME1 LINE L1 6165 6549 -2241 456 141 81 101 chr15 25312314 25312413 -76068108 - LTR12 LTR ERV1 -132 582 313 1237 155 0 48 chr15 25312413 25312684 -76067837 - AluY SINE Alu -20 291 34 1502 144 60 173 chr15 25312713 25313165 -76067356 - LTR12 LTR ERV1 -313 401 1 928 207 97 94 chr15 25313228 25313415 -76067106 + L1ME1 LINE L1 6574 6759 -202 2414 115 13 31 chr15 25313415 25313797 -76066724 + THE1C LTR MaLR 1 375 0 928 207 97 94 chr15 25313797 25313991 -76066530 + L1ME1 LINE L1 6759 6956 -5 2071 112 0 3 chr15 25314546 25314842 -76065679 + AluY SINE Alu 1 295 -16 564 249 104 37 chr15 25314878 25315119 -76065402 - L1ME3A LINE L1 -99 6071 5815 274 128 0 0 chr15 25315220 25315259 -76065262 - MLT1B LTR MaLR -17 373 335 762 261 125 46 chr15 25315321 25315624 -76064897 - MLT1B LTR MaLR -63 327 1 231 146 0 24 chr15 25315627 25315668 -76064853 - L1MC4 LINE L1 -144 7898 7859 3374 222 61 13 chr15 25315734 25316840 -76063681 - L1M4 LINE L1 -2937 3707 2544 2426 211 80 88 chr15 25316973 25317720 -76062801 - L1M4 LINE L1 -4608 2038 1286 1848 128 10 10 chr15 25317720 25318017 -76062504 + AluSx SINE Alu 1 297 -15 2426 211 80 88 chr15 25318017 25318385 -76062136 - L1M4 LINE L1 -5360 1286 907 195 100 0 0 chr15 25318385 25318415 -76062106 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2426 211 80 88 chr15 25318415 25318598 -76061923 - L1M4 LINE L1 -5739 907 724 1106 190 125 54 chr15 25318662 25318887 -76061634 + MER2 DNA MER2_type 2 210 -135 1880 126 17 3 chr15 25318887 25319188 -76061333 - L1MA3 LINE L1 -1 6304 6000 1106 190 125 54 chr15 25319188 25319211 -76061310 + MER2 DNA MER2_type 210 230 -115 1804 150 0 0 chr15 25319211 25319498 -76061023 - AluSx SINE Alu -25 287 1 1106 190 125 54 chr15 25319498 25319543 -76060978 + MER2 DNA MER2_type 230 317 -28 426 254 49 60 chr15 25319576 25319761 -76060760 - L1M4 LINE L1 -5877 665 483 362 297 114 10 chr15 25319865 25320067 -76060454 - L1M4 LINE L1 -6304 238 16 229 239 73 73 chr15 25320640 25320654 -76059867 - MIR SINE MIR -68 140 127 1505 121 14 68 chr15 25320654 25320746 -76059775 + AluJb SINE Alu 36 131 -181 2077 112 0 10 chr15 25320746 25321040 -76059481 - AluSq SINE Alu -22 291 1 1505 121 14 68 chr15 25321040 25321227 -76059294 + AluJb SINE Alu 131 300 -12 229 239 73 73 chr15 25321227 25321321 -76059200 - MIR SINE MIR -80 128 32 217 306 58 50 chr15 25322168 25322289 -76058232 + MIR SINE MIR 98 219 -43 1786 146 16 177 chr15 25324182 25324696 -76055825 - LTR12 LTR ERV1 -231 483 53 263 231 0 0 chr15 25324696 25324748 -76055773 - LTR30 LTR ERV1 -670 52 1 1916 96 30 46 chr15 25326152 25326455 -76054066 - AluSx SINE Alu -14 298 1 1062 223 97 19 chr15 25326517 25326836 -76053685 + MER2 DNA MER2_type 1 344 0 303 194 32 54 chr15 25326860 25326953 -76053568 - L1MC4 LINE L1 -88 7954 7864 323 353 24 12 chr15 25326982 25327234 -76053287 + L1ME LINE L1 4886 5140 -1006 228 159 0 23 chr15 25327246 25327259 -76053262 + (CATA)n Simple_repeat Simple_repeat 2 14 -30 1514 185 14 11 chr15 25327259 25327546 -76052975 + AluJb SINE Alu 1 288 -24 228 159 0 23 chr15 25327546 25327576 -76052945 + (CATA)n Simple_repeat Simple_repeat 14 44 0 1930 174 36 0 chr15 25327630 25327964 -76052557 - MER7A DNA MER2_type -1 345 2 269 299 65 90 chr15 25328123 25328477 -76052044 + L1ME LINE L1 5367 5711 -410 1006 176 150 49 chr15 25328511 25328778 -76051743 - MER66A LTR ERV1 -1 477 184 369 147 46 67 chr15 25328776 25328885 -76051636 - MER41B LTR ERV1 -269 323 191 * 393 149 75 0 chr15 25329198 25329265 -76051256 + MLT1A2 LTR MaLR 1 72 -302 472 191 0 22 chr15 25329456 25329545 -76050976 + MER72 LTR ERV1 370 456 -266 356 182 94 54 chr15 25329668 25329806 -76050715 + LTR45B LTR ERV1 351 783 0 3073 102 93 9 chr15 25329808 25330268 -76050253 + Charlie3 DNA MER1_type 2 500 -2210 * 3424 92 18 2 chr15 25330262 25330720 -76049801 + Charlie3 DNA MER1_type 2242 2706 -4 441 258 48 0 chr15 25330721 25330845 -76049676 + MLT1A2 LTR MaLR 62 191 -183 1067 79 13 26 chr15 25331520 25331672 -76048849 + AluSq/x SINE Alu 1 150 -163 532 95 0 0 chr15 25331673 25331747 -76048774 + Alu SINE Alu 222 295 -17 330 221 75 80 chr15 25333838 25334051 -76046470 + L1ME1 LINE L1 4943 5154 -992 1840 198 101 13 chr15 25334058 25334532 -76045989 + L1ME1 LINE L1 5648 6163 -3 270 81 0 0 chr15 25335651 25335688 -76044833 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 266 248 99 30 chr15 25336971 25337072 -76043449 - MER94 DNA DNA -23 111 4 642 190 224 6 chr15 25337419 25337593 -76042928 + MER20 DNA MER1_type 2 213 -6 2041 93 43 7 chr15 25338097 25338398 -76042123 + AluSx SINE Alu 1 312 0 1977 116 0 17 chr15 25338659 25338953 -76041568 - AluSx SINE Alu -23 289 1 888 194 164 64 chr15 25339061 25339391 -76041130 + MLT1A1 LTR MaLR 3 365 0 1449 180 0 4 chr15 25339608 25339847 -76040674 - MER8 DNA MER2_type 0 239 2 1151 126 0 0 chr15 25340040 25340214 -76040307 - AluSg/x SINE Alu 0 310 137 3636 44 0 0 chr15 25340314 25340749 -76039772 + L1PA5 LINE L1 5716 6150 -4 1284 94 0 0 chr15 25340752 25340922 -76039599 + AluSp SINE Alu 130 299 -14 232 236 45 0 chr15 25341376 25341465 -76039056 + MLT1J1 LTR MaLR 222 314 -132 2140 99 3 10 chr15 25342730 25343033 -76037488 - AluSx SINE Alu -11 301 1 718 279 276 17 chr15 25343068 25343598 -76036923 + L2 LINE L2 2309 2975 -339 1798 218 57 14 chr15 25343636 25344054 -76036467 - MLT1C LTR MaLR -5 462 27 2337 84 0 3 chr15 25344055 25344365 -76036156 - AluY SINE Alu -2 309 1 2275 88 0 13 chr15 25344365 25344673 -76035848 - AluSq SINE Alu -9 304 1 1492 174 33 10 chr15 25345210 25345509 -76035012 + L1MB7 LINE L1 5562 5867 -317 886 235 177 18 chr15 25345509 25345895 -76034626 + LTR48B LTR ERV1 1 409 -213 1206 133 0 10 chr15 25345919 25346114 -76034407 + AluSg/x SINE Alu 117 309 -1 2219 115 21 24 chr15 25346115 25346455 -76034066 + MSTC LTR MaLR 88 426 -2 248 250 32 97 chr15 25347485 25347609 -76032912 - MER69A DNA AcHobo -19 158 43 2809 215 82 46 chr15 25347694 25348461 -76032060 + MER21B LTR ERV1 12 806 -57 2088 122 0 3 chr15 25348860 25349163 -76031358 - AluSx SINE Alu -8 304 3 1312 185 13 21 chr15 25349457 25349695 -76030826 - LTR8 LTR ERV1 0 691 456 3511 120 78 32 chr15 25349703 25350302 -76030219 - MER41B LTR ERV1 -8 627 1 2319 121 61 93 chr15 25350302 25350771 -76029750 - LTR8 LTR ERV1 -232 459 6 2281 84 0 0 chr15 25351136 25351444 -76029077 - AluSg SINE Alu -2 308 1 191 121 15 76 chr15 25351589 25351655 -76028866 + GA-rich Low_complexity Low_complexity 2 63 0 1310 113 4 84 chr15 25352343 25352617 -76027904 + AluJb SINE Alu 41 292 -20 2283 73 3 7 chr15 25353193 25353496 -76027025 + AluSp SINE Alu 1 302 -11 874 126 0 15 chr15 25353496 25353623 -76026898 - FLAM_C SINE Alu -175 127 1 292 200 179 83 chr15 25355562 25355707 -76024814 - MLT1K LTR MaLR -111 477 319 2080 105 0 3 chr15 25356057 25356351 -76024170 + AluSx SINE Alu 1 293 -19 2207 80 7 0 chr15 25356601 25356888 -76023633 - AluSx SINE Alu -23 289 1 945 216 158 18 chr15 25357374 25357647 -76022874 - MER33 DNA MER1_type -2 322 12 2108 119 0 10 chr15 25358867 25359177 -76021344 - AluSg SINE Alu -2 308 2 648 113 66 28 chr15 25359332 25359438 -76021083 + MER46A DNA MER2_type 1 110 -126 378 184 0 0 chr15 25359439 25359515 -76021006 + MER46A DNA MER2_type 158 233 -3 404 211 59 125 chr15 25359535 25359615 -76020906 + MER104 DNA Tc2 35 102 -1796 1804 140 21 0 chr15 25359615 25359900 -76020621 - AluSx SINE Alu -21 291 1 404 211 59 125 chr15 25359900 25359971 -76020550 + MER104 DNA Tc2 102 176 -4 2066 110 13 10 chr15 25360861 25361162 -76019359 + AluSx SINE Alu 1 302 -10 363 303 68 8 chr15 25361162 25361294 -76019227 + MIR SINE MIR 24 163 -99 527 257 33 56 chr15 25362259 25362473 -76018048 + L1ME LINE L1 5366 5574 -590 956 241 111 6 chr15 25362552 25362808 -76017713 + L1M4 LINE L1 3878 4178 -1968 2170 107 7 3 chr15 25362808 25363116 -76017405 + AluSx SINE Alu 1 309 -3 956 241 111 6 chr15 25363116 25363191 -76017330 + L1M4 LINE L1 4178 4244 -1902 2041 122 0 3 chr15 25364316 25364612 -76015909 - AluSx SINE Alu -17 295 1 601 247 80 7 chr15 25364684 25364834 -76015687 - MER58B DNA MER1_type -1 340 180 263 241 115 23 chr15 25367009 25367096 -76013425 - L2 LINE L2 -1 3312 3218 2308 69 3 0 chr15 25367191 25367482 -76013039 - AluY SINE Alu -19 292 1 2319 79 0 3 chr15 25367482 25367785 -76012736 - AluY SINE Alu -9 302 1 498 202 97 24 chr15 25368581 25368705 -76011816 + MLT1E3 LTR MaLR 90 222 -402 294 130 0 0 chr15 25368916 25368962 -76011559 - MLT2F LTR ERVL -2 661 616 278 227 15 15 chr15 25369027 25369093 -76011428 + MIR3 SINE MIR 7 72 -136 23 0 0 0 chr15 25369197 25369220 -76011301 + AT_rich Low_complexity Low_complexity 1 23 0 227 257 121 7 chr15 25370409 25370547 -76009974 + MIR SINE MIR 20 179 -65 180 0 0 0 chr15 25371069 25371089 -76009432 + (A)n Simple_repeat Simple_repeat 1 20 0 2277 109 120 5 chr15 25374133 25374517 -76006004 + MSTA LTR MaLR 1 428 0 9476 138 11 42 chr15 25374517 25376148 -76004373 + MSTA-int LTR MaLR 1 1580 0 2078 137 129 5 chr15 25376148 25376529 -76003992 + MSTA LTR MaLR 1 428 0 181 0 0 0 chr15 25379091 25379111 -76001410 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1998 113 0 0 chr15 25379111 25379377 -76001144 - AluSx SINE Alu -30 282 17 35 54 0 0 chr15 25379704 25379760 -76000761 + AT_rich Low_complexity Low_complexity 1 56 0 2321 66 7 7 chr15 25379996 25380299 -76000222 - AluY SINE Alu -8 303 1 1901 165 0 13 chr15 25380916 25381232 -75999289 + AluSq SINE Alu 2 313 0 23 0 0 0 chr15 25381410 25381433 -75999088 + AT_rich Low_complexity Low_complexity 1 23 0 2267 80 37 10 chr15 25381703 25382003 -75998518 - AluSp SINE Alu -5 308 1 1849 160 0 17 chr15 25382756 25383082 -75997439 + AluSx SINE Alu 1 321 0 234 218 13 51 chr15 25383770 25383848 -75996673 - MER20 DNA MER1_type 0 219 145 259 159 0 0 chr15 25383974 25384018 -75996503 + MER96B DNA MER1_type? 191 234 -183 985 147 0 7 chr15 25384849 25385028 -75995493 + AluSg/x SINE Alu 132 309 0 2417 63 0 13 chr15 25385237 25385538 -75994983 + AluY SINE Alu 1 297 -14 1565 188 43 0 chr15 25386001 25386120 -75994401 + AluJo SINE Alu 3 115 -197 234 0 0 0 chr15 25386120 25386146 -75994375 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1565 188 43 0 chr15 25386146 25386308 -75994213 + AluJo SINE Alu 115 296 -16 234 250 42 0 chr15 25387815 25387887 -75992634 + MIR SINE MIR 117 191 -71 444 213 213 7 chr15 25389161 25389316 -75991205 - MIR SINE MIR 0 262 76 687 188 43 120 chr15 25389373 25389607 -75990914 + MER20 DNA MER1_type 1 216 -3 2360 91 0 7 chr15 25390242 25390539 -75989982 - AluSx SINE Alu -17 295 1 1903 172 13 0 chr15 25391060 25391368 -75989153 + AluJb SINE Alu 1 312 0 186 43 0 0 chr15 25394104 25394127 -75986394 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1510 186 0 66 chr15 25394498 25394831 -75985690 + AluJo SINE Alu 1 311 -1 2476 56 0 7 chr15 25395197 25395499 -75985022 - AluY SINE Alu -11 300 1 1297 60 72 0 chr15 25395744 25395910 -75984611 - AluY SINE Alu -14 297 120 1034 158 82 0 chr15 25396038 25396234 -75984287 + MER20 DNA MER1_type 8 219 0 1182 168 40 128 chr15 25397169 25397490 -75983031 + AluJo SINE Alu 1 293 -9 447 272 106 57 chr15 25398048 25398413 -75982108 + L1ME LINE L1 4637 5025 -1121 1612 190 7 23 chr15 25398675 25398975 -75981546 + AluJo SINE Alu 4 298 -14 269 308 111 31 chr15 25398995 25399127 -75981394 + L1ME LINE L1 5310 5430 -691 2266 103 0 0 chr15 25399127 25399418 -75981103 + AluSc SINE Alu 1 291 -18 269 308 111 31 chr15 25399418 25399700 -75980821 + L1ME LINE L1 5430 5757 -364 245 280 116 37 chr15 25400060 25400249 -75980272 + L1M4 LINE L1 3661 3864 -2282 35 41 0 0 chr15 25401148 25401197 -75979324 + AT_rich Low_complexity Low_complexity 1 49 0 1048 210 113 0 chr15 25401758 25402049 -75978472 - MER33 DNA MER1_type 0 324 1 1909 149 13 7 chr15 25402244 25402552 -75977969 - AluJb SINE Alu -2 310 1 336 48 0 0 chr15 25402602 25402644 -75977877 + (TG)n Simple_repeat Simple_repeat 1 42 0 725 198 23 109 chr15 25403351 25403520 -75977001 + LTR41 LTR ERVL 482 615 -158 2133 114 3 16 chr15 25403520 25403689 -75976832 - AluSx SINE Alu -10 302 137 2304 65 14 3 chr15 25403689 25403982 -75976539 - AluY SINE Alu -15 296 1 2133 114 3 16 chr15 25403982 25404118 -75976403 - AluSx SINE Alu -175 137 1 725 198 23 109 chr15 25404118 25404251 -75976270 + LTR41 LTR ERVL 615 758 -15 965 190 0 22 chr15 25405596 25405775 -75974746 - AluJb SINE Alu -4 308 134 2335 99 0 3 chr15 25405781 25406083 -75974438 - AluSx SINE Alu -11 301 1 362 312 163 47 chr15 25406502 25406864 -75973657 + L2 LINE L2 2824 3227 -86 2548 59 0 3 chr15 25406881 25407188 -75973333 + AluY SINE Alu 1 306 -5 3378 89 35 8 chr15 25407705 25408213 -75972308 + L1PA14 LINE L1 5640 6161 0 1152 143 107 14 chr15 25408321 25408537 -75971984 - MER46A DNA MER2_type 0 236 1 1622 140 104 3 chr15 25408696 25409003 -75971518 + MER7A DNA MER2_type 11 346 0 244 231 123 0 chr15 25410159 25410224 -75970297 - MER58A DNA MER1_type -32 75 3 292 271 146 0 chr15 25410745 25410841 -75969680 - MIR SINE MIR -125 137 28 2147 121 39 100 chr15 25411498 25411960 -75968561 + Tigger2a DNA MER2_type 1 434 0 4587 123 36 10 chr15 25413010 25413789 -75966732 - L1MA9 LINE L1 -2 6310 5512 2275 101 0 3 chr15 25414058 25414356 -75966165 - AluSx SINE Alu -15 297 1 693 183 111 7 chr15 25414506 25414659 -75965862 + MER58A DNA MER1_type 47 215 -9 472 249 30 20 chr15 25414898 25415099 -75965422 - L1MA9 LINE L1 -817 5329 5127 * 4718 223 73 54 chr15 25415094 25415232 -75965289 - L1M4 LINE L1 -869 5277 5143 2060 142 0 3 chr15 25415232 25415534 -75964987 + AluSx SINE Alu 1 301 -11 4718 223 73 54 chr15 25415534 25417218 -75963303 - L1M4 LINE L1 -1003 5143 3493 207 0 0 0 chr15 25417218 25417241 -75963280 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1970 134 24 0 chr15 25417250 25417540 -75962981 - AluSx SINE Alu -15 297 1 4718 223 73 54 chr15 25417540 25417901 -75962620 - L1M4 LINE L1 -2660 3486 3041 7898 158 59 34 chr15 25418574 25418869 -75961652 + L1MA3 LINE L1 3505 3791 -2514 2295 130 80 8 chr15 25418869 25419268 -75961253 + MSTA LTR MaLR 1 428 0 7898 158 59 34 chr15 25419268 25419812 -75960709 + L1MA3 LINE L1 3791 4320 -1985 180 0 0 0 chr15 25419812 25419832 -75960689 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 7898 158 59 34 chr15 25419832 25420989 -75959532 + L1MA3 LINE L1 4320 5447 -858 2025 89 96 0 chr15 25420989 25421271 -75959250 + AluY SINE Alu 1 309 -2 7898 158 59 34 chr15 25421271 25421354 -75959167 + L1MA3 LINE L1 5447 5526 -779 2047 115 10 7 chr15 25421354 25421649 -75958872 + AluSx SINE Alu 1 296 -16 7898 158 59 34 chr15 25421649 25422282 -75958239 + L1MA3 LINE L1 5526 6305 0 716 179 33 26 chr15 25422458 25422609 -75957912 - MER58B DNA MER1_type -3 338 187 203 331 16 33 chr15 25422689 25422810 -75957711 - MER5A DNA MER1_type -68 121 3 290 244 25 101 chr15 25423143 25423262 -75957259 - L2 LINE L2 0 3313 3204 528 195 70 38 chr15 25423476 25423661 -75956860 - MER33 DNA MER1_type 0 363 173 258 264 28 0 chr15 25423682 25423754 -75956767 - MER33 DNA MER1_type -241 83 10 1278 204 23 3 chr15 25424092 25424396 -75956125 + L1MB8 LINE L1 4867 5176 -970 677 195 0 23 chr15 25426247 25426375 -75954146 - FLAM_A SINE Alu -8 125 1 2194 108 7 7 chr15 25426961 25427258 -75953263 + AluSg SINE Alu 1 297 -13 280 252 148 9 chr15 25427499 25427614 -75952907 - L2 LINE L2 -1 3312 3182 639 311 153 53 chr15 25427971 25428787 -75951734 - L2 LINE L2 -666 2648 1751 1503 203 0 7 chr15 25429081 25429362 -75951159 + AluJb SINE Alu 1 279 -33 246 32 0 0 chr15 25429362 25429393 -75951128 + (CAA)n Simple_repeat Simple_repeat 2 32 0 251 253 92 23 chr15 25432835 25432922 -75947599 + L1MB8 LINE L1 5562 5654 -467 4653 122 98 61 chr15 25433076 25433637 -75946884 + Tigger3b DNA MER2_type 1 540 -2488 1673 153 51 0 chr15 25433637 25433912 -75946609 + AluSx SINE Alu 1 289 -23 1690 68 135 41 chr15 25433916 25434182 -75946339 + AluY SINE Alu 21 311 0 4653 122 98 61 chr15 25434182 25434641 -75945880 + Tigger3b DNA MER2_type 542 1064 -167 1567 179 57 3 chr15 25434645 25434946 -75945575 - MER7A DNA MER2_type -31 315 1 2498 71 0 0 chr15 25434996 25435293 -75945228 + AluY SINE Alu 1 297 -14 508 264 110 72 chr15 25435869 25436241 -75944280 - MER113 DNA MER1_type? -1 520 123 1904 164 0 10 chr15 25436241 25436539 -75943982 - AluJo SINE Alu -17 295 1 508 264 110 72 chr15 25436539 25436667 -75943854 - MER113 DNA MER1_type? -398 123 1 1561 196 66 17 chr15 25437828 25438236 -75942285 + L1MB8 LINE L1 5741 6168 -10 3815 188 21 7 chr15 25438374 25439097 -75941424 + MER44D DNA MER2_type 1 605 0 390 316 70 41 chr15 25439244 25439801 -75940720 + L1M4 LINE L1 3370 3942 -2204 3195 244 58 24 chr15 25439854 25440918 -75939603 - Charlie1a DNA MER1_type -349 1106 7 22 0 0 0 chr15 25440953 25440975 -75939546 + AT_rich Low_complexity Low_complexity 1 22 0 722 208 19 42 chr15 25441112 25441328 -75939193 + L1MC/D LINE L1 5533 5743 -2065 303 293 46 69 chr15 25441687 25441861 -75938660 + MER5B DNA MER1_type 7 176 -2 231 377 9 9 chr15 25442201 25442315 -75938206 + L2 LINE L2 2948 3061 -211 1730 244 17 28 chr15 25442541 25443013 -75937508 + LTR31 LTR ERV1 115 581 -38 243 0 0 0 chr15 25443414 25443441 -75937080 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3388 144 17 6 chr15 25443535 25444056 -75936465 - MER1A DNA MER1_type 0 527 1 6078 174 32 8 chr15 25444377 25445673 -75934848 + L1PA13 LINE L1 3049 4375 -1771 4763 110 80 25 chr15 25445674 25446463 -75934058 + L1PA13 LINE L1 4646 5390 -773 2273 113 0 0 chr15 25446463 25446763 -75933758 + AluSp SINE Alu 1 300 -13 4763 110 80 25 chr15 25446763 25447430 -75933091 + L1PA13 LINE L1 5390 6152 -11 2136 104 13 13 chr15 25447773 25448071 -75932450 - AluSq SINE Alu -15 298 1 372 284 183 41 chr15 25448071 25448339 -75932182 + HAL1b LINE L1 493 798 -550 514 204 120 7 chr15 25448799 25448941 -75931580 + MER58B DNA MER1_type 181 338 -3 236 319 29 0 chr15 25449269 25449338 -75931183 - MIR3 SINE MIR -10 198 128 * 255 298 220 21 chr15 25449334 25449475 -75931046 + MIR3 SINE MIR 36 204 -4 1708 168 14 20 chr15 25449976 25450268 -75930253 - AluJo SINE Alu -17 295 6 469 121 61 0 chr15 25450581 25450680 -75929841 - L1MB8 LINE L1 -3 6175 6071 1032 221 8 0 chr15 25450685 25450934 -75929587 + L1M4 LINE L1 4907 5157 -989 * 3323 180 78 4 chr15 25450931 25451781 -75928740 - L1MB8 LINE L1 -115 6063 5153 2333 211 104 42 chr15 25451943 25452107 -75928414 + L1ME1 LINE L1 5287 5439 -727 1956 115 11 0 chr15 25452107 25452377 -75928144 - AluSx SINE Alu -38 274 2 2333 211 104 42 chr15 25452377 25452417 -75928104 + L1ME1 LINE L1 5439 5475 -691 1248 171 54 0 chr15 25452417 25452639 -75927882 - MER46A DNA MER2_type 0 236 3 2333 211 104 42 chr15 25452639 25453262 -75927259 + L1ME1 LINE L1 5475 6166 0 21 57 0 0 chr15 25453270 25453305 -75927216 + AT_rich Low_complexity Low_complexity 1 35 0 2412 67 0 7 chr15 25453524 25453822 -75926699 - AluY SINE Alu -15 296 1 21 0 0 0 chr15 25453831 25453852 -75926669 + AT_rich Low_complexity Low_complexity 1 21 0 226 359 31 31 chr15 25454133 25454261 -75926260 - MIR SINE MIR -119 143 16 2712 7 0 0 chr15 25455571 25455868 -75924653 - AluYa5 SINE Alu -14 297 1 1353 67 130 24 chr15 25455890 25456098 -75924423 + MER30 DNA MER1_type 1 230 0 1673 139 139 9 chr15 25457368 25457692 -75922829 + MER47A DNA MER2_type 1 366 0 249 303 0 50 chr15 25459048 25459147 -75921374 + MIR3 SINE MIR 115 208 0 207 0 0 0 chr15 25459637 25459660 -75920861 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 290 110 82 55 chr15 25459760 25459833 -75920688 - MADE1 DNA Mariner 0 80 6 184 306 122 20 chr15 25460701 25460799 -75919722 - L2 LINE L2 -1884 1430 1323 195 171 49 49 chr15 25460805 25460846 -75919675 - L2 LINE L2 -73 3240 3200 500 204 12 126 chr15 25461595 25461850 -75918671 + L1MC4a LINE L1 6044 6269 -1539 24 67 0 0 chr15 25461863 25461908 -75918613 + AT_rich Low_complexity Low_complexity 1 45 0 2149 129 7 0 chr15 25462093 25462396 -75918125 + AluSx SINE Alu 1 305 -7 435 266 38 22 chr15 25462396 25462580 -75917941 + L1ME3A LINE L1 5939 6125 -45 1074 196 28 40 chr15 25462728 25463055 -75917466 + L1MC5 LINE L1 7003 7325 -636 550 173 4 9 chr15 25463055 25463165 -75917356 + MER33 DNA MER1_type 1 100 -88 447 172 69 28 chr15 25463223 25463368 -75917153 + MER33 DNA MER1_type 88 238 -86 239 224 86 9 chr15 25463420 25463536 -75916985 + L1MC5 LINE L1 7344 7468 -493 2132 105 3 7 chr15 25463671 25463967 -75916554 + AluSq SINE Alu 1 295 -18 672 182 0 0 chr15 25464138 25464259 -75916262 - MER46A DNA MER2_type -94 142 22 474 246 41 35 chr15 25464281 25464452 -75916069 + L1MC5 LINE L1 7753 7924 -37 194 293 24 30 chr15 25464837 25464951 -75915570 - L2 LINE L2 -248 3024 2914 426 317 55 35 chr15 25464956 25465155 -75915366 - L2 LINE L2 -2 3311 3109 273 294 66 116 chr15 25465201 25465579 -75914942 - L2 LINE L2 -411 2903 2545 288 0 0 0 chr15 25465967 25465999 -75914522 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 183 80 0 0 chr15 25466030 25466055 -75914466 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 242 215 75 47 chr15 25466357 25466464 -75914057 + L1ME3A LINE L1 6061 6170 0 411 268 87 22 chr15 25466488 25466626 -75913895 + Charlie8 DNA MER1_type 108 254 -2163 489 236 108 32 chr15 25466780 25466937 -75913584 + MIR SINE MIR 78 246 -16 468 207 61 61 chr15 25467554 25467718 -75912803 + L1ME3A LINE L1 5787 5950 -220 448 266 169 0 chr15 25467847 25468001 -75912520 + L2 LINE L2 3127 3306 -7 1802 132 0 59 chr15 25470120 25470424 -75910097 - AluSx SINE Alu -13 299 14 6431 67 5 46 chr15 25470897 25472131 -75908390 + L1PA8 LINE L1 4970 6166 -6 1878 101 36 42 chr15 25472607 25472913 -75907608 - AluSg SINE Alu -6 304 1 1888 111 0 4 chr15 25472916 25473177 -75907344 - AluSx SINE Alu -3 309 50 504 257 138 13 chr15 25473433 25473585 -75906936 + MIR SINE MIR 66 236 -26 266 314 101 6 chr15 25473948 25474178 -75906343 + L1ME LINE L1 5561 5647 -474 184 214 48 0 chr15 25474321 25474363 -75906158 + MIR SINE MIR 198 241 -21 512 312 136 55 chr15 25475695 25476619 -75903902 + L1M2 LINE L1 388 1295 -5554 247 131 0 33 chr15 25476620 25476681 -75903840 + (CGGGG)n Simple_repeat Simple_repeat 1 59 0 1540 94 5 0 chr15 25477978 25478179 -75902342 + AluSq SINE Alu 84 285 -28 324 0 0 0 chr15 25478179 25478215 -75902306 + (CAT)n Simple_repeat Simple_repeat 2 37 0 564 128 53 0 chr15 25478215 25478309 -75902212 + FLAM_C SINE Alu 31 129 -14 22 35 0 0 chr15 25478672 25478701 -75901820 + AT_rich Low_complexity Low_complexity 1 29 0 304 200 0 0 chr15 25479771 25479841 -75900680 + L1MB3 LINE L1 6113 6182 -1 624 250 58 16 chr15 25480497 25480685 -75899836 + MER45C DNA AcHobo 17 212 -741 378 239 110 9 chr15 25480888 25480997 -75899524 + MER45C DNA AcHobo 470 589 -364 1359 168 72 0 chr15 25481282 25481544 -75898977 + MER45B DNA AcHobo 713 993 -47 331 294 155 46 chr15 25481983 25482381 -75898140 - L1MC4a LINE L1 -297 5824 5433 2114 118 3 0 chr15 25482469 25482638 -75897883 - AluSx SINE Alu -14 298 126 180 0 0 0 chr15 25482638 25482658 -75897863 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2114 118 3 0 chr15 25482658 25482785 -75897736 - AluSx SINE Alu -186 126 1 775 171 105 7 chr15 25482838 25482990 -75897531 - L1MD3 LINE L1 -15 7980 7814 195 42 0 0 chr15 25483362 25483386 -75897135 + (A)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr15 25483737 25483772 -75896749 + AT_rich Low_complexity Low_complexity 1 35 0 30 45 0 0 chr15 25484042 25484086 -75896435 + AT_rich Low_complexity Low_complexity 1 44 0 21 82 0 0 chr15 25484202 25484251 -75896270 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr15 25484412 25484434 -75896087 + AT_rich Low_complexity Low_complexity 1 22 0 1072 238 142 114 chr15 25484446 25485682 -75894839 + L1MC5 LINE L1 6637 7906 -55 665 286 172 29 chr15 25485760 25486236 -75894285 + MLT1H LTR MaLR 6 549 0 1981 146 10 3 chr15 25487132 25487427 -75893094 - AluSx SINE Alu -15 297 1 21 57 0 0 chr15 25487574 25487609 -75892912 + AT_rich Low_complexity Low_complexity 1 35 0 2493 50 7 0 chr15 25487609 25487906 -75892615 - AluY SINE Alu -12 299 1 2100 106 7 7 chr15 25487952 25488245 -75892276 - AluSg1 SINE Alu -16 293 1 992 104 0 7 chr15 25489248 25489392 -75891129 + FRAM SINE Alu 20 162 -14 318 67 0 0 chr15 25489612 25489657 -75890864 + (GA)n Simple_repeat Simple_repeat 1 45 0 2251 75 14 0 chr15 25490000 25490294 -75890227 - AluY SINE Alu -13 298 1 1250 176 42 139 chr15 25490364 25490768 -75889753 + MLT1A1 LTR MaLR 1 365 0 2045 94 4 7 chr15 25491028 25491303 -75889218 + AluSp SINE Alu 29 302 -11 4261 204 62 44 chr15 25491822 25491866 -75888655 - L1MD2 LINE L1 -9 6350 6308 2094 158 0 0 chr15 25491866 25492170 -75888351 + AluSx SINE Alu 1 304 -8 4261 204 62 44 chr15 25492170 25492328 -75888193 - L1MD2 LINE L1 -51 6308 6154 251 27 0 27 chr15 25492328 25492365 -75888156 + (TG)n Simple_repeat Simple_repeat 1 36 0 4261 204 62 44 chr15 25492365 25492716 -75887805 - L1MD2 LINE L1 -205 6154 5811 2552 62 0 0 chr15 25492716 25493021 -75887500 - AluY SINE Alu -6 305 1 4261 204 62 44 chr15 25493021 25493083 -75887438 - L1MD2 LINE L1 -548 5811 5752 1728 179 13 19 chr15 25493083 25493396 -75887125 + AluJo SINE Alu 1 311 -1 4261 204 62 44 chr15 25493396 25494085 -75886436 - L1MD2 LINE L1 -607 5752 5022 231 337 33 0 chr15 25494479 25494571 -75885950 - L2 LINE L2 -40 3273 3179 238 113 19 38 chr15 25495423 25495476 -75885045 + CT-rich Low_complexity Low_complexity 1 52 0 3636 147 21 20 chr15 25495809 25496413 -75884108 - MER6A DNA MER2_type 0 605 1 2522 70 3 3 chr15 25496898 25497211 -75883310 - AluSp SINE Alu 0 313 1 518 259 84 93 chr15 25497303 25497732 -75882789 - L2 LINE L2 -70 3243 2819 340 145 4 49 chr15 25497766 25497821 -75882700 - Alu SINE Alu -1 301 259 1834 107 52 0 chr15 25497821 25498091 -75882430 - AluSx SINE Alu -28 284 1 340 145 4 49 chr15 25498091 25498111 -75882410 - Alu SINE Alu -43 259 240 1838 275 104 14 chr15 25498118 25498817 -75881704 - L2 LINE L2 -628 2686 1925 1976 99 10 7 chr15 25499247 25499540 -75880981 + AluSc SINE Alu 1 294 -15 2298 70 0 3 chr15 25500365 25500675 -75879846 + AluY SINE Alu 1 309 0 216 205 0 0 chr15 25500746 25500785 -75879736 - L2 LINE L2 -10 3303 3265 1348 145 9 14 chr15 25500813 25501034 -75879487 - AluJb SINE Alu -3 309 90 2128 201 37 80 chr15 25501036 25501225 -75879296 - L1M4 LINE L1 -2937 3209 3014 2296 97 0 0 chr15 25501225 25501525 -75878996 + AluY SINE Alu 1 300 -11 2128 201 37 80 chr15 25501525 25502140 -75878381 - L1M4 LINE L1 -3132 3014 2439 2364 91 3 0 chr15 25502301 25502599 -75877922 + AluSc SINE Alu 1 299 -10 269 142 124 159 chr15 25503028 25503141 -75877380 + MLT1F1 LTR MaLR 1 109 -458 30 27 0 0 chr15 25503141 25503178 -75877343 + AT_rich Low_complexity Low_complexity 1 37 0 1944 134 10 33 chr15 25503178 25503483 -75877038 + AluSx SINE Alu 1 298 -14 752 179 27 0 chr15 25503483 25503595 -75876926 - AluJo/FLAM SINE Alu -196 116 2 1439 212 42 111 chr15 25503597 25504047 -75876474 + MLT1F1 LTR MaLR 94 507 -60 2313 85 7 19 chr15 25504047 25504354 -75876167 - AluSg SINE Alu -7 303 1 1439 212 42 111 chr15 25504354 25504408 -75876113 + MLT1F1 LTR MaLR 507 563 -4 799 172 0 22 chr15 25504420 25504554 -75875967 + FLAM_C SINE Alu 2 132 -11 915 249 75 31 chr15 25504564 25504575 -75875946 + L1MD2 LINE L1 3151 3160 -2986 2075 154 0 0 chr15 25504575 25504880 -75875641 + AluSx SINE Alu 1 305 -7 915 249 75 31 chr15 25504880 25505281 -75875240 + L1MD2 LINE L1 3160 3581 -2565 * 4627 206 53 31 chr15 25505270 25506347 -75874174 + L1MD2 LINE L1 4588 5711 -648 2301 81 20 0 chr15 25506347 25506644 -75873877 + AluSp SINE Alu 1 303 -10 4627 206 53 31 chr15 25506644 25507278 -75873243 + L1MD2 LINE L1 5711 6329 -30 1014 229 86 67 chr15 25507975 25508421 -75872100 + MLT1C LTR MaLR 1 458 -9 746 107 14 29 chr15 25509120 25509260 -75871261 + L1MA4 LINE L1 6160 6297 -3 2164 108 10 0 chr15 25509294 25509589 -75870932 + AluSx SINE Alu 1 298 -14 2145 139 25 79 chr15 25509698 25509863 -75870658 + L1MB7 LINE L1 5663 5835 -349 618 138 165 18 chr15 25509863 25509972 -75870549 + FLAM_A SINE Alu 1 125 -8 2145 139 25 79 chr15 25509972 25510238 -75870283 + L1MB7 LINE L1 5835 6071 -113 462 216 11 0 chr15 25510321 25510409 -75870112 - MER2 DNA MER2_type 0 345 257 994 69 0 0 chr15 25510409 25510525 -75869996 + AluY SINE Alu 1 116 -195 522 92 0 0 chr15 25510525 25510590 -75869931 + AluJ/FRAM SINE Alu 233 297 -15 1658 165 4 0 chr15 25510592 25510853 -75869668 - MER2 DNA MER2_type -82 263 2 361 78 20 0 chr15 25511049 25511100 -75869421 - MER75B DNA T2_type 0 243 192 2246 100 0 3 chr15 25511490 25511780 -75868741 - AluSq SINE Alu -24 289 1 1840 177 0 7 chr15 25511836 25512136 -75868385 + AluJb SINE Alu 1 298 -14 338 264 0 0 chr15 25512160 25512247 -75868274 - L2 LINE L2 -4 3268 3182 1772 139 7 17 chr15 25512266 25512554 -75867967 - AluJb SINE Alu -17 295 11 703 191 22 15 chr15 25512573 25512709 -75867812 - AluJb SINE Alu -174 138 2 1513 176 3 30 chr15 25514145 25514440 -75866081 - L1MB7 LINE L1 -185 5999 5713 726 212 15 0 chr15 25514443 25514580 -75865941 + Tigger1 DNA MER2_type 1 139 -2279 * 1122 154 32 41 chr15 25514576 25514797 -75865724 + Tigger1 DNA MER2_type 2200 2418 0 2299 158 21 76 chr15 25514797 25515115 -75865406 - L1MB7 LINE L1 -466 5712 5378 997 72 29 22 chr15 25515115 25515253 -75865268 + MER85 DNA T2_type 1 139 0 2299 158 21 76 chr15 25515253 25515811 -75864710 - L1MB7 LINE L1 -800 5378 4903 298 202 0 0 chr15 25515836 25515892 -75864629 - MIR3 SINE MIR -50 158 102 237 65 0 0 chr15 25516352 25516383 -75864138 + (T)n Simple_repeat Simple_repeat 1 31 0 2128 102 0 3 chr15 25516540 25516844 -75863677 + AluSx SINE Alu 3 305 0 282 220 0 0 chr15 25516971 25517030 -75863491 + Charlie8 DNA MER1_type 33 91 -2326 297 140 20 0 chr15 25517114 25517164 -75863357 + Charlie8 DNA MER1_type 1363 1413 -1004 1458 92 0 83 chr15 25517637 25517866 -75862655 + AluSg SINE Alu 1 210 -100 309 323 21 0 chr15 25517933 25518026 -75862495 + L2 LINE L2 3153 3247 -25 185 262 82 16 chr15 25519440 25519501 -75861020 - L2 LINE L2 -41 3231 3167 1427 180 20 56 chr15 25521151 25521299 -75859222 + AluJo SINE Alu 1 134 -178 1988 159 0 7 chr15 25521299 25521601 -75858920 + AluJo SINE Alu 1 300 -12 1427 180 20 56 chr15 25521601 25521757 -75858764 + AluJo SINE Alu 134 294 -18 214 317 61 0 chr15 25522037 25522119 -75858402 + L2 LINE L2 3185 3271 -1 309 277 31 23 chr15 25522582 25522712 -75857809 + L1M4 LINE L1 4904 5034 -1112 2200 76 0 96 chr15 25523321 25523665 -75856856 - AluSx SINE Alu -1 311 1 28 29 0 0 chr15 25528197 25528232 -75852289 + AT_rich Low_complexity Low_complexity 1 35 0 2348 96 3 0 chr15 25529087 25529389 -75851132 - AluSg SINE Alu -7 303 1 641 220 100 13 chr15 25529489 25529639 -75850882 - MER3 DNA MER1_type 0 209 47 1551 83 69 14 chr15 25529669 25529763 -75850758 - MER30 DNA MER1_type -1 229 142 2379 94 0 3 chr15 25529763 25530060 -75850461 + AluSx SINE Alu 1 296 -16 1551 83 69 14 chr15 25530060 25530182 -75850339 - MER30 DNA MER1_type -88 142 1 1782 159 20 17 chr15 25530744 25531046 -75849475 - AluJb SINE Alu -9 303 1 2238 76 7 33 chr15 25531053 25531492 -75849029 - AluSg SINE Alu 0 431 1 208 0 0 0 chr15 25531569 25531592 -75848929 + (TTTG)n Simple_repeat Simple_repeat 2 124 0 2247 67 7 3 chr15 25531592 25531875 -75848646 - AluY SINE Alu -1 306 1 2416 74 0 6 chr15 25532368 25532679 -75847842 + AluSc SINE Alu 1 309 0 1342 174 5 5 chr15 25533234 25533453 -75847068 - AluSg/x SINE Alu -9 301 83 6183 142 25 22 chr15 25533800 25534956 -75845565 - L1MA10 LINE L1 -4 6330 5171 259 306 97 15 chr15 25534983 25535117 -75845404 + MIR SINE MIR 10 154 -108 222 62 0 0 chr15 25535460 25535492 -75845029 + (TA)n Simple_repeat Simple_repeat 2 33 0 189 0 0 0 chr15 25537250 25537271 -75843250 + (GAAAA)n Simple_repeat Simple_repeat 5 25 0 22 0 0 0 chr15 25537344 25537366 -75843155 + AT_rich Low_complexity Low_complexity 1 22 0 205 236 164 73 chr15 25537759 25537789 -75842732 - MIR3 SINE MIR -25 183 157 464 321 38 11 chr15 25537789 25537973 -75842548 + MER5A DNA MER1_type 1 189 0 205 236 164 73 chr15 25537973 25538052 -75842469 - MIR3 SINE MIR -51 157 64 27 62 0 0 chr15 25539800 25539848 -75840673 + AT_rich Low_complexity Low_complexity 1 48 0 878 163 14 0 chr15 25539992 25540139 -75840382 + FAM SINE Alu 21 169 -16 399 296 208 26 chr15 25540154 25540606 -75839915 + L1ME LINE L1 4310 4843 -1303 365 79 40 13 chr15 25540768 25540838 -75839683 + (TA)n Simple_repeat Simple_repeat 2 74 0 2197 101 7 3 chr15 25540838 25541126 -75839395 - AluSq SINE Alu -24 289 1 643 209 71 75 chr15 25541351 25541618 -75838903 + L1ME LINE L1 5523 5784 -337 39 60 0 0 chr15 25541695 25541762 -75838759 + AT_rich Low_complexity Low_complexity 1 67 0 196 132 0 57 chr15 25541779 25541832 -75838689 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 211 182 0 0 chr15 25541870 25541903 -75838618 + (CA)n Simple_repeat Simple_repeat 2 34 0 268 309 36 0 chr15 25543136 25543220 -75837301 + LTR67 LTR ERVL 107 193 -364 193 95 0 143 chr15 25544800 25544842 -75835679 + L3b LINE CR1 1540 1575 -8 16546 121 22 11 chr15 25544982 25547373 -75833148 + Tigger1 DNA MER2_type 1 2417 -1 2043 146 0 0 chr15 25547701 25547989 -75832532 + AluSx SINE Alu 1 288 -24 286 125 21 0 chr15 25548040 25548088 -75832433 - MLT1A2 LTR MaLR 0 374 326 5302 198 97 41 chr15 25548089 25549316 -75831205 - MLT1A1-int LTR MaLR -439 1296 1 1808 179 36 30 chr15 25549316 25549655 -75830866 - MLT1A1 LTR MaLR 0 365 29 2352 141 28 19 chr15 25549655 25550016 -75830505 + THE1B LTR MaLR 1 364 0 12594 84 9 9 chr15 25550016 25551597 -75828924 + THE1B-int LTR MaLR 1 1580 0 2437 137 28 14 chr15 25551597 25551956 -75828565 + THE1B LTR MaLR 1 364 0 1808 179 36 30 chr15 25551956 25551977 -75828544 - MLT1A1 LTR MaLR -335 30 1 477 227 100 47 chr15 25552118 25552268 -75828253 - MER46A DNA MER2_type -78 158 1 * 1107 181 60 9 chr15 25552134 25552350 -75828171 + MER46A DNA MER2_type 1 227 -9 205 306 88 31 chr15 25553034 25553194 -75827327 + MIR SINE MIR 20 188 -74 1032 254 155 32 chr15 25553368 25554149 -75826372 - L2 LINE L2 0 3313 2434 291 316 45 82 chr15 25554278 25554522 -75825999 - L2 LINE L2 -13 3259 3025 2346 94 3 0 chr15 25555063 25555361 -75825160 + AluSx SINE Alu 1 299 -13 1687 100 0 0 chr15 25556277 25556497 -75824024 + AluSc SINE Alu 1 220 -89 2535 48 0 0 chr15 25556975 25557267 -75823254 - AluY SINE Alu -19 292 1 671 315 133 0 chr15 25557677 25557979 -75822542 - L2 LINE L2 -509 2805 2464 266 244 13 32 chr15 25558054 25558174 -75822347 + L1ME4a LINE L1 5325 5429 -737 1713 180 103 28 chr15 25558220 25558648 -75821873 + MLT1C LTR MaLR 6 465 -2 785 306 68 16 chr15 25558651 25558958 -75821563 + L1ME4a LINE L1 5484 5806 -315 4414 140 32 29 chr15 25558961 25559712 -75820809 + L1MC1 LINE L1 5570 6322 -11 2165 100 21 0 chr15 25559714 25559993 -75820528 + AluSx SINE Alu 1 285 -27 34 42 0 0 chr15 25560017 25560065 -75820456 + AT_rich Low_complexity Low_complexity 1 48 0 829 100 0 0 chr15 25560098 25560208 -75820313 - AluSg/x SINE Alu -8 302 193 490 189 5 55 chr15 25560324 25560464 -75820057 + L1MC4 LINE L1 7845 8042 0 2376 87 0 0 chr15 25560479 25560777 -75819744 + AluY SINE Alu 1 298 -13 351 258 132 13 chr15 25560791 25560950 -75819571 + L1ME4a LINE L1 5939 6116 -5 471 248 48 28 chr15 25561301 25561446 -75819075 + HAL1 LINE L1 1047 1194 -1313 1122 196 97 33 chr15 25561499 25561830 -75818691 + HAL1 LINE L1 1296 1647 -860 491 261 200 74 chr15 25561851 25562088 -75818433 + MLT1L LTR MaLR 5 211 -404 2148 117 0 19 chr15 25562088 25562224 -75818297 + AluSx SINE Alu 1 138 -174 2491 67 0 10 chr15 25562224 25562538 -75817983 + AluY SINE Alu 1 311 0 2148 117 0 19 chr15 25562538 25562709 -75817812 + AluSx SINE Alu 138 302 -10 491 261 200 74 chr15 25562709 25562930 -75817591 + MLT1L LTR MaLR 211 521 -94 2370 125 149 8 chr15 25564738 25565113 -75815408 - MSTA LTR MaLR 0 428 1 1768 181 54 25 chr15 25565316 25565670 -75814851 - MLT1A1 LTR MaLR 0 365 2 2056 113 41 0 chr15 25565779 25566072 -75814449 + AluSg SINE Alu 1 305 -5 481 181 55 48 chr15 25566083 25566229 -75814292 + L1ME1 LINE L1 6017 6162 -2 210 360 33 7 chr15 25566530 25566680 -75813841 - L2 LINE L2 -474 2840 2687 243 360 11 0 chr15 25566806 25566895 -75813626 + Charlie4 DNA MER1_type 1867 1956 -5 360 152 0 0 chr15 25568200 25568266 -75812255 + (CA)n Simple_repeat Simple_repeat 2 67 0 1960 87 20 0 chr15 25569354 25569608 -75810913 + AluSq SINE Alu 44 302 -11 355 292 179 40 chr15 25570783 25571112 -75809409 + HAL1 LINE L1 91 465 -2042 3348 137 16 2 chr15 25571168 25571673 -75808848 - L1MB3 LINE L1 -11 6172 5661 398 255 0 11 chr15 25571673 25571767 -75808754 + HAL1 LINE L1 811 903 -1604 1794 170 0 13 chr15 25571801 25572112 -75808409 + AluJb SINE Alu 1 307 -5 1199 244 132 9 chr15 25572115 25572570 -75807951 + HAL1 LINE L1 1104 1614 -893 603 221 202 54 chr15 25572728 25573045 -75807476 - L2 LINE L2 0 3313 2950 298 248 112 8 chr15 25573418 25573543 -75806978 - MIR SINE MIR -102 160 23 262 254 30 0 chr15 25574382 25574449 -75806072 + L1MC4a LINE L1 7739 7807 -1 200 278 262 0 chr15 25574476 25574667 -75805854 + L2 LINE L2 664 904 -2410 231 277 61 34 chr15 25574899 25575047 -75805474 - HAL1 LINE L1 -665 1842 1691 311 213 101 77 chr15 25575053 25575171 -75805350 - L1MC5 LINE L1 -36 7925 7800 2164 123 0 19 chr15 25575171 25575488 -75805033 - AluSq SINE Alu 0 313 3 311 213 101 77 chr15 25575488 25575538 -75804983 - L1MC5 LINE L1 -161 7800 7753 779 156 0 0 chr15 25575561 25575670 -75804851 + FLAM_C SINE Alu 18 126 -17 431 291 194 18 chr15 25576271 25576671 -75803850 + L1ME LINE L1 5351 5820 -301 233 329 13 0 chr15 25576679 25576755 -75803766 + L2 LINE L2 1177 1253 -2061 1616 125 101 87 chr15 25576814 25577181 -75803340 + L1MB8 LINE L1 5806 6177 -1 1523 159 34 23 chr15 25577450 25577714 -75802807 - AluJb SINE Alu -45 267 1 514 248 117 5 chr15 25577721 25577927 -75802594 + L1ME4a LINE L1 5713 5941 -180 203 345 0 0 chr15 25578824 25578882 -75801639 + MIR SINE MIR 90 147 -115 284 238 12 0 chr15 25579081 25579161 -75801360 - L1MB8 LINE L1 -2 6176 6096 2058 130 7 7 chr15 25579672 25579973 -75800548 + AluSq SINE Alu 1 301 -12 1908 121 0 0 chr15 25580428 25580684 -75799837 + AluSx SINE Alu 49 304 -8 989 267 48 22 chr15 25581603 25581918 -75798603 + L1ME LINE L1 5372 5694 -476 2555 50 3 0 chr15 25582004 25582304 -75798217 + AluY SINE Alu 1 301 -10 2742 278 129 45 chr15 25582481 25582757 -75797764 + L1M4 LINE L1 2773 3024 -3122 1882 161 0 0 chr15 25582757 25583048 -75797473 + AluSx SINE Alu 1 291 -21 180 0 0 0 chr15 25583052 25583072 -75797449 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2742 278 129 45 chr15 25583072 25584275 -75796246 + L1M4 LINE L1 3026 4126 -2020 2906 122 23 25 chr15 25584275 25584710 -75795811 - Tigger2a DNA MER2_type 0 434 1 2742 278 129 45 chr15 25584710 25585021 -75795500 + L1M4 LINE L1 4126 4409 -1737 4437 77 18 0 chr15 25585021 25585565 -75794956 - MER41A LTR ERV1 0 554 1 2742 278 129 45 chr15 25585565 25586093 -75794428 + L1M4 LINE L1 4409 5295 -851 24 32 0 0 chr15 25586347 25586378 -75794143 + AT_rich Low_complexity Low_complexity 1 31 0 183 329 170 20 chr15 25586534 25586887 -75793634 - L2 LINE L2 -997 2317 1912 23 0 0 0 chr15 25590719 25590742 -75789779 + AT_rich Low_complexity Low_complexity 1 23 0 2052 153 25 25 chr15 25592958 25593323 -75787198 + MLT1A1 LTR MaLR 1 365 0 222 329 114 25 chr15 25596269 25596427 -75784094 - L2 LINE L2 -10 3303 3132 2334 95 3 7 chr15 25596688 25596994 -75783527 + AluSg SINE Alu 1 305 -5 2230 114 0 0 chr15 25597007 25597297 -75783224 + AluSx SINE Alu 1 290 -22 2249 67 3 11 chr15 25597413 25597735 -75782786 - AluY SINE Alu 0 320 1 2535 230 184 22 chr15 25599000 25599117 -75781404 + L1MC4 LINE L1 6484 6581 -1461 294 29 0 0 chr15 25599117 25599152 -75781369 + (CA)n Simple_repeat Simple_repeat 2 36 0 2535 230 184 22 chr15 25599152 25599992 -75780529 + L1MC4 LINE L1 6581 7596 -446 184 270 81 40 chr15 25600066 25600140 -75780381 - L2 LINE L2 0 3313 3237 460 291 49 85 chr15 25600845 25601291 -75779230 + MLT1J LTR MaLR 5 434 -77 2131 104 10 0 chr15 25601329 25601618 -75778903 + AluSc SINE Alu 5 296 -13 252 290 65 19 chr15 25602051 25602158 -75778363 + MLT1K LTR MaLR 457 568 -20 449 203 0 6 chr15 25602255 25602418 -75778103 + (CCA)n Simple_repeat Simple_repeat 3 164 0 804 248 5 0 chr15 25602520 25602718 -75777803 + L1MC2 LINE L1 3544 3742 -2404 1141 157 0 0 chr15 25602720 25602886 -75777635 + AluJb SINE Alu 3 168 -144 2211 95 7 3 chr15 25602912 25603206 -75777315 - AluSg SINE Alu -15 295 1 2829 190 55 4 chr15 25603207 25604111 -75776410 + L1MC2 LINE L1 4899 5858 -486 914 122 0 6 chr15 25604298 25604479 -75776042 + (CCA)n Simple_repeat Simple_repeat 1 180 0 603 206 0 0 chr15 25604509 25604684 -75775837 + (CCA)n Simple_repeat Simple_repeat 3 177 0 312 208 0 0 chr15 25604701 25604797 -75775724 + (CCA)n Simple_repeat Simple_repeat 3 98 0 501 239 8 45 chr15 25605155 25605289 -75775232 + MIR SINE MIR 112 240 -22 2308 115 0 0 chr15 25605443 25605748 -75774773 - AluSx SINE Alu -7 305 1 218 79 0 26 chr15 25606913 25606951 -75773570 + (TAAAAA)n Simple_repeat Simple_repeat 2 38 0 2318 100 0 0 chr15 25607421 25607722 -75772799 - AluSx SINE Alu -11 301 1 29 90 0 0 chr15 25608994 25609072 -75771449 + AT_rich Low_complexity Low_complexity 1 78 0 2381 75 0 3 chr15 25609079 25609373 -75771148 + AluSg SINE Alu 1 293 -17 1554 135 0 12 chr15 25609819 25610064 -75770457 + AluJo SINE Alu 71 312 0 1507 158 29 40 chr15 25610885 25611163 -75769358 + AluJb SINE Alu 9 283 -29 958 248 83 73 chr15 25611579 25612168 -75768353 - L1ME4a LINE L1 -14 6176 5582 372 332 60 11 chr15 25612220 25612485 -75768036 - L1M4 LINE L1 -3532 2614 2337 260 261 72 29 chr15 25612608 25612746 -75767775 - L1ME4a LINE L1 -4055 2341 2198 264 289 0 12 chr15 25612885 25612968 -75767553 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 2303 95 0 3 chr15 25613266 25613570 -75766951 - AluY SINE Alu -8 303 1 21 0 0 0 chr15 25614358 25614379 -75766142 + AT_rich Low_complexity Low_complexity 1 21 0 1609 179 0 11 chr15 25614653 25614932 -75765589 + AluJo SINE Alu 23 298 -14 1351 13 0 0 chr15 25615612 25615762 -75764759 - AluYb8 SINE Alu -2 316 167 2384 84 0 7 chr15 25617137 25617436 -75763085 + AluSq SINE Alu 1 297 -16 214 258 114 30 chr15 25617653 25617785 -75762736 + MIR SINE MIR 120 262 0 2373 89 0 0 chr15 25617941 25618232 -75762289 - AluSc SINE Alu -18 291 1 506 195 81 16 chr15 25618387 25618510 -75762011 + MLT1C LTR MaLR 64 194 -311 24 32 0 0 chr15 25618649 25618680 -75761841 + AT_rich Low_complexity Low_complexity 1 31 0 712 191 24 154 chr15 25618707 25618953 -75761568 + MLT1C LTR MaLR 170 460 -7 2071 133 0 7 chr15 25619467 25619792 -75760729 - AluSx SINE Alu 0 323 1 1986 111 14 4 chr15 25620503 25620815 -75759706 + AluSq SINE Alu 3 317 0 599 235 33 66 chr15 25620881 25621094 -75759427 - L2 LINE L2 0 3313 3108 2015 95 9 76 chr15 25621299 25621615 -75758906 - AluSx SINE Alu -16 296 2 25 0 0 0 chr15 25621636 25621661 -75758860 + AT_rich Low_complexity Low_complexity 1 25 0 434 292 113 11 chr15 25621685 25621870 -75758651 - MIR SINE MIR -7 255 52 22 0 0 0 chr15 25622791 25622813 -75757708 + GC_rich Low_complexity Low_complexity 1 22 0 4268 169 105 53 chr15 25623747 25623883 -75756638 - Tigger6a DNA MER2_type -514 1083 955 1754 152 3 13 chr15 25623883 25624192 -75756329 + AluJo SINE Alu 3 308 -4 4268 169 105 53 chr15 25624192 25624980 -75755541 - Tigger6a DNA MER2_type -642 955 97 1850 151 0 21 chr15 25624980 25625298 -75755223 - AluJb SINE Alu 0 316 5 4268 169 105 53 chr15 25625298 25625400 -75755121 - Tigger6a DNA MER2_type -1500 97 2 210 119 0 48 chr15 25625406 25625448 -75755073 + (TA)n Simple_repeat Simple_repeat 2 41 0 6912 210 89 35 chr15 25625972 25628148 -75752373 + L1M4 LINE L1 37 2093 -4553 2448 86 0 0 chr15 25628148 25628449 -75752072 + AluY SINE Alu 1 301 -10 6912 210 89 35 chr15 25628449 25628461 -75752060 + L1M4 LINE L1 2093 2103 -4543 1900 155 27 0 chr15 25628461 25628582 -75751939 + AluJo SINE Alu 1 117 -195 315 0 0 0 chr15 25628582 25628617 -75751904 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1900 155 27 0 chr15 25628617 25628792 -75751729 + AluJo SINE Alu 117 305 -7 6912 210 89 35 chr15 25628792 25629099 -75751422 + L1M4 LINE L1 2103 2699 -3947 829 230 45 45 chr15 25629096 25629409 -75751112 + L1M4 LINE L1 3539 3851 -2793 * 844 191 13 0 chr15 25629414 25629566 -75750955 + FRAM SINE Alu 1 40 0 415 209 17 9 chr15 25629566 25629681 -75750840 + GA-rich Low_complexity Low_complexity 4 119 0 349 269 15 8 chr15 25629684 25629818 -75750703 + L1M4 LINE L1 3881 4015 -2629 455 230 0 0 chr15 25629821 25629908 -75750613 + L2 LINE L2 3218 3304 -9 2170 114 0 0 chr15 25630103 25630392 -75750129 - AluSx SINE Alu -23 289 1 231 173 0 0 chr15 25630420 25630472 -75750049 + (CA)n Simple_repeat Simple_repeat 2 53 0 350 225 79 0 chr15 25630472 25630561 -75749960 + MER112 DNA MER1_type 67 162 -98 647 312 50 80 chr15 25630561 25630950 -75749571 + L2 LINE L2 293 663 -2651 2518 53 0 0 chr15 25630950 25631249 -75749272 - AluY SINE Alu -12 299 1 647 312 50 80 chr15 25631249 25631394 -75749127 + L2 LINE L2 663 811 -2503 493 235 69 104 chr15 25631394 25631654 -75748867 - MER102a DNA MER1_type -2 328 78 266 271 110 88 chr15 25631771 25631801 -75748720 + HAL1 LINE L1 149 177 -2330 2481 52 3 13 chr15 25631801 25632107 -75748414 + AluY SINE Alu 1 303 -8 266 271 110 88 chr15 25632107 25632505 -75748016 + HAL1 LINE L1 177 622 -1885 708 255 47 56 chr15 25632549 25632890 -75747631 - HAL1 LINE L1 -335 2172 1835 481 30 30 0 chr15 25632891 25632958 -75747563 + (GA)n Simple_repeat Simple_repeat 2 70 0 234 95 0 48 chr15 25632961 25633003 -75747518 - MLT2C1 LTR ERVL -48 349 310 390 96 41 0 chr15 25633045 25633118 -75747403 + GA-rich Low_complexity Low_complexity 2 77 0 1588 184 34 24 chr15 25633121 25633449 -75747072 - MLT2D LTR ERVL -20 534 55 3444 275 113 44 chr15 25633527 25633628 -75746893 + L1ME3A LINE L1 1868 1961 -4254 2108 124 3 7 chr15 25633628 25633934 -75746587 - AluSq SINE Alu -8 305 1 3444 275 113 44 chr15 25633934 25634169 -75746352 + L1ME3A LINE L1 1961 2178 -4037 2345 95 0 0 chr15 25634169 25634464 -75746057 + AluY SINE Alu 9 303 -8 3444 275 113 44 chr15 25634464 25635554 -75744967 + L1ME3A LINE L1 2178 3192 -3023 501 230 22 65 chr15 25635554 25635693 -75744828 - MER94 DNA DNA 0 134 2 3444 275 113 44 chr15 25635693 25636091 -75744430 + L1ME3A LINE L1 3192 3561 -2654 1579 174 34 31 chr15 25636091 25636384 -75744137 + AluJo SINE Alu 1 294 -18 3444 275 113 44 chr15 25636384 25637004 -75743517 + L1ME3A LINE L1 3561 4137 -2078 3144 176 26 11 chr15 25637004 25637545 -75742976 - MER44D DNA MER2_type -1 604 1 3444 275 113 44 chr15 25637545 25637702 -75742819 + L1ME3A LINE L1 4137 4282 -1933 2281 79 28 0 chr15 25637702 25637993 -75742528 - AluSx SINE Alu -13 299 1 2488 64 0 0 chr15 25638002 25638300 -75742221 - AluY SINE Alu -11 300 3 3444 275 113 44 chr15 25638300 25638865 -75741656 + L1ME3A LINE L1 4289 5341 -874 2132 84 30 7 chr15 25638940 25639237 -75741284 + AluSg SINE Alu 1 304 -6 560 247 124 6 chr15 25639239 25639496 -75741025 + L1ME3A LINE L1 5365 5644 -595 558 262 48 6 chr15 25639505 25639673 -75740848 + LTR41 LTR ERVL 7 181 -592 369 250 47 123 chr15 25639923 25640199 -75740322 + LTR41 LTR ERVL 510 764 -9 861 273 54 24 chr15 25640235 25640569 -75739952 + L1ME3A LINE L1 5693 6036 -203 203 217 196 0 chr15 25640788 25640834 -75739687 - L2 LINE L2 -81 3191 3137 2098 142 0 0 chr15 25640884 25641231 -75739290 - AluJb SINE Alu 0 347 1 1489 243 105 101 chr15 25641294 25641652 -75738869 + L1MEd LINE L1 78 433 -5686 1920 151 0 7 chr15 25641652 25641943 -75738578 + AluSx SINE Alu 24 312 0 1489 243 105 101 chr15 25641943 25642453 -75738068 + L1MEd LINE L1 433 949 -5170 331 360 100 20 chr15 25643388 25643588 -75736933 + L2 LINE L2 3056 3271 -1 1081 211 100 106 chr15 25643632 25644144 -75736377 - MLT1J LTR MaLR 0 511 3 270 310 0 0 chr15 25644799 25644870 -75735651 - L2 LINE L2 -1 3312 3242 2561 60 0 0 chr15 25645979 25646280 -75734241 + AluY SINE Alu 1 301 -10 2069 116 0 0 chr15 25646282 25646567 -75733954 + AluSq SINE Alu 17 301 -12 316 308 122 51 chr15 25646630 25646819 -75733702 - L1ME LINE L1 -508 5654 5443 2289 108 0 3 chr15 25646819 25647125 -75733396 + AluSx SINE Alu 1 305 -7 316 308 122 51 chr15 25647125 25647172 -75733349 - L1ME LINE L1 -719 5443 5401 393 231 23 69 chr15 25647223 25647396 -75733125 - L1ME LINE L1 -874 5272 5108 4849 146 26 43 chr15 25648926 25649021 -75731500 + L1PB4 LINE L1 5254 5349 -954 1881 144 16 19 chr15 25649021 25649334 -75731187 - AluSx SINE Alu 0 312 1 4849 146 26 43 chr15 25649334 25649479 -75731042 + L1PB4 LINE L1 5349 5495 -808 2140 109 0 0 chr15 25649479 25649763 -75730758 - AluSg SINE Alu -26 284 1 4849 146 26 43 chr15 25649763 25650454 -75730067 + L1PB4 LINE L1 5495 6300 -3 2209 111 7 0 chr15 25650666 25650964 -75729557 + AluSx SINE Alu 1 300 -12 209 258 0 41 chr15 25651337 25651434 -75729087 + CT-rich Low_complexity Low_complexity 4 96 0 306 286 85 54 chr15 25651435 25651659 -75728862 - MLT1H-int LTR MaLR -832 539 309 297 278 26 9 chr15 25651667 25651782 -75728739 - MLT1H-int LTR MaLR -1250 121 5 1028 264 117 34 chr15 25651786 25652290 -75728231 - MLT1H LTR MaLR 0 549 4 433 351 50 32 chr15 25652450 25652732 -75727789 - L3 LINE CR1 -78 1499 1213 1484 121 0 5 chr15 25653211 25653418 -75727103 - L1PB1 LINE L1 -2 6149 5944 1973 161 0 19 chr15 25654143 25654460 -75726061 + AluJb SINE Alu 1 311 -1 796 172 11 11 chr15 25654475 25654649 -75725872 + GA-rich Low_complexity Low_complexity 4 177 0 2399 121 121 3 chr15 25654654 25654859 -75725662 + MSTB LTR MaLR 2 181 -245 201 39 0 0 chr15 25654859 25654885 -75725636 + (TC)n Simple_repeat Simple_repeat 1 26 0 2399 121 121 3 chr15 25654885 25655059 -75725462 + MSTB LTR MaLR 181 426 0 702 130 32 24 chr15 25655144 25655267 -75725254 + L1MB4 LINE L1 6057 6180 0 2365 99 0 6 chr15 25655275 25655587 -75724934 - AluSg SINE Alu 0 310 1 1967 122 0 4 chr15 25656572 25656851 -75723670 - AluSx SINE Alu -18 294 17 411 264 145 50 chr15 25656873 25656962 -75723559 - MER5A DNA MER1_type -7 182 103 2532 74 0 0 chr15 25656962 25657272 -75723249 - AluY SINE Alu -1 310 1 411 264 145 50 chr15 25657272 25657341 -75723180 - MER5A DNA MER1_type -86 103 9 293 322 38 2 chr15 25657577 25657687 -75722834 + MER20B DNA MER1_type 86 202 -17 191 250 0 0 chr15 25657755 25657799 -75722722 + L2 LINE L2 774 817 -2497 1653 162 10 43 chr15 25658319 25658621 -75721900 + AluJo SINE Alu 1 292 -20 326 167 30 15 chr15 25660898 25660964 -75719557 - MER58 DNA MER1_type -4 2416 2350 487 242 12 55 chr15 25663242 25663494 -75717027 + L1MEc LINE L1 2063 2260 -3955 2261 81 3 10 chr15 25663494 25663792 -75716729 - AluSg1 SINE Alu -13 296 1 487 242 12 55 chr15 25663792 25663823 -75716698 + L1MEc LINE L1 2260 2291 -3924 804 133 23 0 chr15 25663823 25663951 -75716570 + AluJb SINE Alu 1 131 -181 442 226 11 0 chr15 25713952 25714045 -75666476 + MER81 DNA DNA 16 109 -5 267 194 16 16 chr15 25714055 25714117 -75666404 - MLT1K LTR MaLR -23 565 504 284 256 88 40 chr15 25714214 25714339 -75666182 - MER5B DNA MER1_type -31 147 17 581 257 11 29 chr15 25714371 25714546 -75665975 - MER5B DNA MER1_type -5 173 2 190 238 38 100 chr15 25714842 25714922 -75665599 + MIR SINE MIR 77 151 -111 2464 59 10 7 chr15 25716213 25716520 -75664001 + AluY SINE Alu 1 308 -3 974 227 68 31 chr15 25716820 25717630 -75662891 - L1M4c LINE L1 -4838 1808 919 1020 229 135 52 chr15 25717927 25718290 -75662231 - MSTD LTR MaLR -2 394 2 26 50 0 0 chr15 25718351 25718391 -75662130 + AT_rich Low_complexity Low_complexity 1 40 0 210 276 92 61 chr15 25719356 25719454 -75661067 - MIR SINE MIR -146 116 16 185 321 0 0 chr15 25719744 25719800 -75660721 + MIR3 SINE MIR 112 167 -41 3211 139 79 18 chr15 25720791 25721359 -75659162 + LTR26 LTR ERV1 1 603 0 39 0 0 0 chr15 25722197 25722236 -75658285 + GC_rich Low_complexity Low_complexity 1 39 0 1032 202 163 28 chr15 25722991 25723273 -75657248 + L1MDa LINE L1 27 346 -6194 334 312 102 9 chr15 25723647 25723980 -75656541 + HAL1 LINE L1 1235 1598 -909 782 248 124 62 chr15 25724288 25724804 -75655717 + MER45C DNA AcHobo 46 951 -2 2065 213 73 64 chr15 25724806 25725355 -75655166 + MLT2B3 LTR ERVL 1 554 0 1780 264 130 14 chr15 25725713 25726305 -75654216 - MLT2F LTR ERVL -2 661 1 2613 65 0 0 chr15 25726608 25726916 -75653605 + AluY SINE Alu 1 308 -3 312 273 82 26 chr15 25727325 25727702 -75652819 + HAL1b LINE L1 373 792 -556 650 219 14 139 chr15 25728027 25728315 -75652206 + L1MC5 LINE L1 6710 6961 -1000 522 280 127 34 chr15 25728320 25728588 -75651933 - LTR16B LTR ERVL 0 464 172 758 246 101 86 chr15 25728742 25728998 -75651523 + L1MC5 LINE L1 6966 7234 -727 2295 113 3 0 chr15 25728998 25729300 -75651221 + AluSq SINE Alu 1 303 -10 758 246 101 86 chr15 25729300 25729510 -75651011 + L1MC5 LINE L1 7234 7439 -522 234 239 58 71 chr15 25729655 25729810 -75650711 + L1ME3 LINE L1 5963 6115 -47 1901 138 10 3 chr15 25730078 25730375 -75650146 + AluSx SINE Alu 1 299 -13 259 306 97 8 chr15 25730391 25730515 -75650006 + L1MDa LINE L1 461 595 -5935 318 265 117 12 chr15 25731232 25731394 -75649127 + L1MDa LINE L1 917 1095 -5448 686 247 72 51 chr15 25731663 25732196 -75648325 + L1MDa LINE L1 2258 2748 -3792 * 1120 237 125 25 chr15 25732182 25732663 -75647858 + L1MDa LINE L1 3332 3860 -2680 2896 175 15 0 chr15 25732678 25733226 -75647295 + L1PA16 LINE L1 4848 5403 -743 4537 115 10 30 chr15 25733239 25733916 -75646605 + L1PA16 LINE L1 5494 6157 -9 2515 53 0 31 chr15 25733938 25734256 -75646265 + AluY SINE Alu 1 308 -3 241 191 32 32 chr15 25734259 25734322 -75646199 + L1MDa LINE L1 3868 3930 -2610 1398 175 30 17 chr15 25734621 25734855 -75645666 + MER8 DNA MER2_type 2 238 -1 319 264 0 0 chr15 25734911 25734983 -75645538 - L1MEd LINE L1 -6037 82 11 344 294 50 1 chr15 25734985 25735127 -75645394 - L1M4 LINE L1 -1123 5023 4873 375 175 16 0 chr15 25735150 25735213 -75645308 + MER92B LTR ERV1 3 66 -570 1715 185 49 0 chr15 25735219 25735586 -75644935 - L1M4 LINE L1 -1828 4318 3934 1258 185 14 0 chr15 25735588 25735799 -75644722 - AluJo SINE Alu -15 297 84 2297 202 2 0 chr15 25735803 25736299 -75644222 - L1M4 LINE L1 -2205 3941 3445 2302 189 13 13 chr15 25736299 25736768 -75643753 + L1PA16 LINE L1 5694 6165 -1 1434 177 76 12 chr15 25736768 25737096 -75643425 + MER92B LTR ERV1 60 408 -228 303 238 0 0 chr15 25737096 25737180 -75643341 + L1M4 LINE L1 3400 3483 -2663 4646 181 35 2 chr15 25737181 25738197 -75642324 - L1 LINE L1 -992 5154 4105 618 135 0 0 chr15 25738299 25738395 -75642126 + MSTB LTR MaLR 331 426 0 3120 178 19 17 chr15 25738718 25739360 -75641161 + L1MD2 LINE L1 5534 6176 -183 523 183 16 16 chr15 25739361 25739487 -75641034 + L1MD1 LINE L1 6117 6242 0 424 300 58 27 chr15 25739514 25739737 -75640784 - L1M4 LINE L1 -1686 4460 4231 308 267 39 36 chr15 25740006 25740348 -75640173 - L1M4 LINE L1 -2423 3723 3386 1345 146 26 15 chr15 25740349 25740617 -75639904 - L1MA4 LINE L1 -3 6297 6027 321 306 99 46 chr15 25740791 25741115 -75639406 - HAL1 LINE L1 -635 1872 1532 624 263 112 10 chr15 25741240 25741552 -75638969 - HAL1 LINE L1 -1157 1350 1007 311 339 90 44 chr15 25741989 25742444 -75638077 + L1MC/D LINE L1 4682 5157 -989 277 322 85 22 chr15 25742506 25742972 -75637549 + L1MC/D LINE L1 5257 5743 -429 361 214 0 36 chr15 25743257 25743397 -75637124 + GA-rich Low_complexity Low_complexity 4 138 0 2034 103 38 14 chr15 25743471 25743761 -75636760 - AluSx SINE Alu -15 297 1 233 328 161 10 chr15 25744251 25744443 -75636078 - MIR SINE MIR -6 256 36 2510 66 0 0 chr15 25745254 25745556 -75634965 + AluY SINE Alu 1 302 -9 1434 142 40 4 chr15 25745686 25745939 -75634582 + MSTB1 LTR MaLR 167 428 -4 1743 180 16 0 chr15 25745956 25746363 -75634158 - MLT2B1 LTR ERVL -56 459 1 665 190 67 6 chr15 25747694 25747873 -75632648 - L1MD3 LINE L1 -14 7981 7792 180 0 0 0 chr15 25748103 25748123 -75632398 + (TG)n Simple_repeat Simple_repeat 2 21 0 198 287 298 23 chr15 25748538 25749232 -75631289 + L2 LINE L2 1853 2737 -577 1173 252 35 19 chr15 25749232 25749656 -75630865 + L1MC4a LINE L1 5511 5941 -1867 220 282 158 34 chr15 25749871 25750137 -75630384 + L2 LINE L2 2804 3102 -211 1410 209 28 63 chr15 25750673 25751071 -75629450 - MLT1B LTR MaLR -6 384 1 1573 232 96 59 chr15 25751071 25751955 -75628566 - MLT1B-int LTR MaLR 0 1735 497 1937 121 121 26 chr15 25751955 25752247 -75628274 - Tigger1 DNA MER2_type 0 2418 2079 2220 110 7 3 chr15 25752247 25752555 -75627966 - AluSg SINE Alu 0 310 2 1937 121 121 26 chr15 25752555 25752649 -75627872 - Tigger1 DNA MER2_type -339 2079 1995 2153 141 0 6 chr15 25753171 25753483 -75627038 - AluSg SINE Alu 0 310 1 485 273 18 0 chr15 25753724 25753834 -75626687 - MER81 DNA DNA 0 114 3 207 0 0 0 chr15 25754012 25754035 -75626486 + (TTG)n Simple_repeat Simple_repeat 2 24 0 262 326 86 31 chr15 25754608 25754958 -75625563 - L1MC5 LINE L1 -455 7506 7138 * 2471 235 74 19 chr15 25754954 25756741 -75623780 - L1MCa LINE L1 -3374 3052 1053 2928 152 45 7 chr15 25756756 25757314 -75623207 - L1MA8 LINE L1 -5 6286 5708 687 237 46 92 chr15 25757323 25757625 -75622896 - L1MD3 LINE L1 -701 7084 6770 2626 63 8 11 chr15 25757625 25757991 -75622530 - L1PA8 LINE L1 -3 6169 5805 687 237 46 92 chr15 25757991 25758244 -75622277 - L1MD3 LINE L1 -1015 6770 6507 2773 3 0 0 chr15 25758244 25758542 -75621979 + AluYa5 SINE Alu 1 298 -13 687 237 46 92 chr15 25758542 25758877 -75621644 - L1MD3 LINE L1 -1278 6507 6158 1461 163 87 24 chr15 25758877 25759166 -75621355 - AluJo SINE Alu -5 307 1 687 237 46 92 chr15 25759166 25759803 -75620718 - L1MD3 LINE L1 -1627 6158 5745 356 245 20 0 chr15 25759818 25759916 -75620605 - L1MD3 LINE L1 -501 5663 5564 * 2606 234 30 74 chr15 25759902 25760326 -75620195 + L1MDb LINE L1 536 977 -5429 2174 94 4 0 chr15 25760326 25760625 -75619896 + AluSx SINE Alu 10 309 0 2606 234 30 74 chr15 25760625 25761210 -75619311 + L1MDb LINE L1 977 1488 -4918 408 287 0 0 chr15 25761264 25761414 -75619107 - L1MD3 LINE L1 -1778 4368 4219 4543 233 56 82 chr15 25761499 25763874 -75616647 + L1M4 LINE L1 2739 5051 -1095 304 259 112 9 chr15 25764000 25764116 -75616405 + L1ME LINE L1 1087 1214 -5326 422 265 42 52 chr15 25764183 25764470 -75616051 + L1ME LINE L1 3896 4179 -2361 775 260 129 73 chr15 25765074 25765317 -75615204 + L1ME LINE L1 4212 4440 -2100 1985 178 58 9 chr15 25765317 25765762 -75614759 + MLT1C LTR MaLR 1 467 0 775 260 129 73 chr15 25765762 25766260 -75614261 + L1ME LINE L1 4440 4995 -1545 23 0 0 0 chr15 25766261 25766284 -75614237 + AT_rich Low_complexity Low_complexity 1 23 0 1280 262 67 19 chr15 25766284 25767167 -75613354 + L1ME LINE L1 5043 5972 -586 1763 266 85 9 chr15 25767210 25768090 -75612431 + L1M4 LINE L1 2855 3801 -2345 306 244 49 0 chr15 25768254 25768336 -75612185 + MLT1J2 LTR MaLR 354 439 -11 2037 117 3 0 chr15 25768374 25768694 -75611827 - AluSx SINE Alu 0 321 1 278 309 65 30 chr15 25769015 25769183 -75611338 - L1MEd LINE L1 -5663 456 283 249 57 0 0 chr15 25769294 25769329 -75611192 + (T)n Simple_repeat Simple_repeat 1 35 0 263 378 27 0 chr15 25769402 25769513 -75611008 - MIR SINE MIR -62 146 33 403 276 125 117 chr15 25771029 25771361 -75609160 - L1M2 LINE L1 -5624 1225 897 231 36 0 0 chr15 25771361 25771389 -75609132 + (CGGGGG)n Simple_repeat Simple_repeat 2 29 0 403 276 125 117 chr15 25771389 25771794 -75608727 - L1M2 LINE L1 -5952 897 527 465 175 58 10 chr15 25774149 25774252 -75606269 + MIR SINE MIR 85 192 -70 291 323 13 77 chr15 25774314 25774469 -75606052 - MIR3 SINE MIR -63 145 1 7656 202 30 87 chr15 25776193 25778948 -75601573 - L1MC1 LINE L1 -2 6400 3934 855 154 0 0 chr15 25778948 25779078 -75601443 - AluSq/x SINE Alu -175 138 9 7656 202 30 87 chr15 25779078 25780828 -75599693 - L1MC1 LINE L1 -2468 3934 2086 4598 221 50 28 chr15 25780929 25782483 -75598038 - L1 LINE L1 -2302 3913 2326 636 222 5 97 chr15 25782488 25782695 -75597826 + L1MCa LINE L1 353 540 -6024 * 3356 188 41 15 chr15 25782693 25783780 -75596741 + L1MCa LINE L1 825 2048 -4516 327 264 35 62 chr15 25783783 25783927 -75596594 - L1M4 LINE L1 -1788 4358 4219 1512 33 0 0 chr15 25783966 25784146 -75596375 - L1PA4 LINE L1 0 6155 5976 8447 28 4 0 chr15 25784146 25785208 -75595313 + L1P LINE L1 4283 5348 -798 344 340 7 0 chr15 25785223 25785367 -75595154 - L1M4 LINE L1 -1987 4159 4015 728 301 73 36 chr15 25785619 25786689 -75593832 - L1M4 LINE L1 -2467 3679 2566 288 215 41 33 chr15 25786779 25786900 -75593621 - L1M LINE L1 -759 5405 5284 360 169 323 40 chr15 25786990 25787114 -75593407 - L1M4 LINE L1 -1491 4655 4497 885 159 7 0 chr15 25787471 25787609 -75592912 - ERVL LTR ERVL -1264 4500 4362 13867 194 43 45 chr15 25787610 25790522 -75589999 - ERVL LTR ERVL -1450 4204 1299 373 174 29 0 chr15 25790516 25790585 -75589936 - ERVL LTR ERVL -5157 607 537 * 1144 231 82 30 chr15 25790586 25790950 -75589571 + L1MC5 LINE L1 5390 5772 -2036 672 258 59 33 chr15 25791222 25791535 -75588986 + L1MC5 LINE L1 6545 6868 -944 319 269 37 15 chr15 25791564 25791698 -75588823 + L1M4 LINE L1 4970 5106 -1040 279 0 0 0 chr15 25791824 25791855 -75588666 + (CA)n Simple_repeat Simple_repeat 2 32 0 551 184 10 0 chr15 25792046 25792144 -75588377 + AluJ/FLAM SINE Alu 1 99 -213 289 314 84 25 chr15 25792360 25792634 -75587887 + L1MEd LINE L1 611 900 -5219 2217 118 0 0 chr15 25792714 25793018 -75587503 + AluSc SINE Alu 1 304 -5 3510 161 22 20 chr15 25793019 25793659 -75586862 + L1MA4 LINE L1 5660 6300 0 679 267 151 46 chr15 25793687 25794118 -75586403 - LTR33 LTR ERVL -14 507 32 478 220 85 14 chr15 25794164 25794305 -75586216 + L1MC5 LINE L1 7076 7226 -735 225 268 102 57 chr15 25794326 25794483 -75586038 + L1MC4a LINE L1 7244 7407 -401 261 231 19 0 chr15 25794613 25794665 -75585856 - MER31B LTR ERV1 -395 71 19 418 286 56 56 chr15 25794670 25794848 -75585673 + LTR16A1 LTR ERVL 280 457 0 252 270 70 20 chr15 25795089 25795189 -75585332 + ERVL LTR ERVL 2477 2581 -3183 646 195 70 0 chr15 25795190 25795318 -75585203 - L1MC1 LINE L1 0 6333 6197 * 1315 164 36 49 chr15 25795316 25795621 -75584900 - L1MDa LINE L1 -4249 2291 1991 2119 194 48 22 chr15 25795622 25795984 -75584537 + MSTB LTR MaLR 1 377 -49 2031 121 90 36 chr15 25795984 25796340 -75584181 - THE1C LTR MaLR 0 375 1 2119 194 48 22 chr15 25796340 25796390 -75584131 + MSTB LTR MaLR 377 424 -2 9977 163 22 18 chr15 25796390 25797368 -75583153 + MSTB-int LTR MaLR 1 992 -659 1988 136 10 13 chr15 25797368 25797670 -75582851 + AluSg SINE Alu 1 301 -9 9977 163 22 18 chr15 25797670 25798334 -75582187 + MSTB-int LTR MaLR 992 1651 0 2486 151 64 10 chr15 25798334 25798738 -75581783 + MSTB LTR MaLR 1 426 0 6457 226 84 44 chr15 25798739 25799103 -75581418 - L1MDa LINE L1 -4547 1993 1645 2397 169 46 7 chr15 25799103 25799518 -75581003 + MSTB1 LTR MaLR 2 432 0 6457 226 84 44 chr15 25799518 25799943 -75580578 - L1MDa LINE L1 -4895 1645 1238 2244 117 0 3 chr15 25799943 25800241 -75580280 - AluSx SINE Alu -15 297 1 6457 226 84 44 chr15 25800241 25801115 -75579406 - L1MDa LINE L1 -5302 1238 242 195 100 0 0 chr15 25801115 25801145 -75579376 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6457 226 84 44 chr15 25801145 25801382 -75579139 - L1MDa LINE L1 -6298 242 16 302 140 0 0 chr15 25801774 25801824 -75578697 - MLT2B1 LTR ERVL -2 518 469 898 255 5 20 chr15 25801891 25802091 -75578430 - MLT2B1 LTR ERVL -63 457 261 1499 287 81 20 chr15 25802228 25803350 -75577171 + L1ME3A LINE L1 4930 6166 -2 270 0 0 0 chr15 25803717 25803747 -75576774 + (TTG)n Simple_repeat Simple_repeat 2 31 0 24 77 0 0 chr15 25803820 25803872 -75576649 + AT_rich Low_complexity Low_complexity 1 52 0 1034 301 106 21 chr15 25804123 25804623 -75575898 + MLT1G1 LTR MaLR 1 595 0 2237 242 73 9 chr15 25805883 25806047 -75574474 + L1MDa LINE L1 2333 2485 -4055 491 17 0 0 chr15 25806047 25806105 -75574416 + L1PA4 LINE L1 6095 6152 -3 2237 242 73 9 chr15 25806105 25806911 -75573610 + L1MDa LINE L1 2485 3374 -3166 2181 230 67 73 chr15 25806904 25807151 -75573370 + L1MDa LINE L1 36 283 -6257 * 189 0 0 0 chr15 25807151 25807172 -75573349 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2181 230 67 73 chr15 25807172 25807849 -75572672 + L1MDa LINE L1 283 1204 -5336 1865 222 93 39 chr15 25807866 25808321 -75572200 + L1MDa LINE L1 3646 4154 -2386 2544 57 0 0 chr15 25808321 25808620 -75571901 + AluY SINE Alu 1 299 -12 1865 222 93 39 chr15 25808620 25808861 -75571660 + L1MDa LINE L1 4154 4380 -2160 247 363 19 25 chr15 25808906 25809063 -75571458 - MIR SINE MIR -73 189 34 212 132 0 53 chr15 25809909 25809947 -75570574 + L2 LINE L2 3262 3297 -16 1391 166 29 4 chr15 25809959 25810200 -75570321 - MLT1A1 LTR MaLR -1 364 118 303 326 101 23 chr15 25812329 25812547 -75567974 + L1MC1 LINE L1 5552 5786 -2022 265 151 57 25 chr15 25814344 25814503 -75566018 + (CTGTG)n Simple_repeat Simple_repeat 1 164 0 191 36 36 0 chr15 25817114 25817142 -75563379 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2188 88 7 29 chr15 25820030 25820336 -75560185 - AluSx SINE Alu -13 299 1 2362 74 0 10 chr15 25820728 25821025 -75559496 + AluY SINE Alu 1 294 -17 1721 52 0 19 chr15 25821137 25821349 -75559172 - AluY SINE Alu -103 208 1 451 232 71 54 chr15 25821355 25821579 -75558942 + L1MC5 LINE L1 7685 7912 -49 422 272 44 0 chr15 25822924 25823060 -75557461 - Charlie1 DNA MER1_type 0 2761 2620 * 574 207 112 95 chr15 25823042 25823274 -75557247 - Charlie1 DNA MER1_type -2521 240 5 313 237 85 25 chr15 25823558 25823676 -75556845 - MLT1I LTR MaLR -244 165 41 2379 75 7 0 chr15 25823683 25823975 -75556546 - AluY SINE Alu -9 302 9 1896 124 71 0 chr15 25824333 25824615 -75555906 - AluSx SINE Alu -10 302 1 262 295 9 62 chr15 25824699 25824811 -75555710 + MIR SINE MIR 136 241 -21 262 219 68 0 chr15 25825794 25825867 -75554654 + L1MEc LINE L1 1129 1206 -5217 * 366 242 10 20 chr15 25825866 25825965 -75554556 + L1MEc LINE L1 2677 2774 -4348 4138 257 60 15 chr15 25825986 25827412 -75553109 + L1MD2 LINE L1 3636 5126 -1815 3852 111 7 32 chr15 25827412 25828007 -75552514 - LTR12 LTR ERV1 -134 580 1 5147 209 45 32 chr15 25828008 25829999 -75550522 + L1MD2 LINE L1 5123 7145 -9 1537 215 9 25 chr15 25830018 25830343 -75550178 + L1MC1 LINE L1 6009 6328 -5 534 278 68 12 chr15 25830350 25830737 -75549784 + L1MEc LINE L1 2772 3145 -3796 323 201 36 65 chr15 25830800 25830908 -75549613 - L1M4b LINE L1 -5283 1263 1151 459 267 37 21 chr15 25830924 25831115 -75549406 - L1M4b LINE L1 -6335 207 14 1708 185 13 3 chr15 25831499 25831797 -75548724 + AluJo SINE Alu 1 301 -11 1674 124 31 99 chr15 25831856 25832178 -75548343 + AluSx SINE Alu 1 300 -12 21 57 0 0 chr15 25832654 25832689 -75547832 + AT_rich Low_complexity Low_complexity 1 35 0 328 208 50 97 chr15 25832834 25833043 -75547478 + L1MCc LINE L1 12 519 -5903 679 229 91 47 chr15 25833533 25833852 -75546669 + L1MCc LINE L1 1665 1997 -4944 1098 270 14 0 chr15 25834258 25834536 -75545985 - MLT1B-int LTR MaLR -770 601 320 635 64 0 0 chr15 25834536 25834614 -75545907 - AluY SINE Alu -16 295 218 860 261 32 16 chr15 25834616 25834865 -75545656 - MLT1B-int LTR MaLR -1118 253 1 1806 175 3 3 chr15 25834869 25835178 -75545343 - AluJb SINE Alu -1 311 3 195 184 0 0 chr15 25835858 25835896 -75544625 + (CA)n Simple_repeat Simple_repeat 1 38 0 215 240 30 20 chr15 25837337 25837437 -75543084 + (TA)n Simple_repeat Simple_repeat 1 101 0 2403 141 27 3 chr15 25837456 25837831 -75542690 - Tigger2 DNA MER2_type -1 2717 2334 8227 22 1 0 chr15 25837872 25839523 -75540998 + L1PA3 LINE L1 4507 6155 0 1759 141 3 21 chr15 25839664 25839948 -75540573 - L1PA16 LINE L1 0 6166 5888 199 267 0 78 chr15 25840305 25840421 -75540100 + L2 LINE L2 3203 3309 -4 21 0 0 0 chr15 25840748 25840769 -75539752 + AT_rich Low_complexity Low_complexity 1 21 0 489 200 78 9 chr15 25841440 25841555 -75538966 - MIR SINE MIR -103 159 37 1278 211 42 7 chr15 25841847 25842132 -75538389 + MLT1F LTR MaLR 243 537 -5 263 270 0 0 chr15 25842305 25842368 -75538153 - L2 LINE L2 -5 3308 3246 281 318 85 23 chr15 25842419 25842595 -75537926 - LTR16C LTR ERVL -218 273 87 2425 83 0 3 chr15 25842829 25843141 -75537380 + AluSq SINE Alu 1 311 -2 1434 224 55 22 chr15 25843607 25843969 -75536552 + MLT1A2 LTR MaLR 1 374 0 2436 91 0 0 chr15 25844333 25844641 -75535880 - AluY SINE Alu -3 308 1 216 229 0 29 chr15 25845053 25845123 -75535398 + T-rich Low_complexity Low_complexity 2 69 0 1510 173 41 77 chr15 25847888 25847940 -75532581 - MLT1B LTR MaLR -16 374 322 2169 107 4 0 chr15 25847940 25848259 -75532262 + AluSq SINE Alu 1 320 0 1510 173 41 77 chr15 25848259 25848593 -75531928 - MLT1B LTR MaLR -68 322 1 372 288 36 29 chr15 25848682 25848852 -75531669 + MIR SINE MIR 11 177 -60 186 43 0 0 chr15 25849262 25849285 -75531236 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1153 138 87 18 chr15 25849373 25849591 -75530930 - THE1C LTR MaLR 0 375 143 306 125 0 0 chr15 25849720 25849768 -75530753 + (TG)n Simple_repeat Simple_repeat 2 49 0 8714 169 94 20 chr15 25849773 25850403 -75530118 - L1MCa LINE L1 -4383 2043 1461 2246 138 9 20 chr15 25850403 25850744 -75529777 - MER1B DNA MER1_type 0 337 1 8714 169 94 20 chr15 25850744 25852013 -75528508 - L1MCa LINE L1 -4965 1461 3 632 259 101 50 chr15 25852463 25853425 -75527096 - L1MEc LINE L1 -4092 2304 1258 2238 110 0 0 chr15 25853427 25853718 -75526803 - AluSg SINE Alu -19 291 1 984 259 5 0 chr15 25853812 25854024 -75526497 + MER20 DNA MER1_type 1 213 -6 516 275 90 61 chr15 25854030 25854443 -75526078 - L1MEc LINE L1 -5018 1187 790 880 157 0 0 chr15 25854684 25854818 -75525703 - AluSx SINE Alu -17 295 162 44622 39 5 1 chr15 25854818 25860941 -75519580 - L1PA4 LINE L1 -3 6152 5 1282 129 0 0 chr15 25860941 25861119 -75519402 - AluSx SINE Alu -134 178 1 2032 155 12 75 chr15 25861446 25861591 -75518930 + L1MA4 LINE L1 5898 6051 -249 2354 92 0 0 chr15 25861591 25861886 -75518635 + AluSc SINE Alu 1 295 -14 2032 155 12 75 chr15 25861886 25862166 -75518355 + L1MA4 LINE L1 6051 6296 -4 214 321 55 28 chr15 25862862 25862971 -75517550 + L3 LINE CR1 770 881 -696 1900 246 53 45 chr15 25863714 25864447 -75516074 - L1ME3 LINE L1 -169 5993 5255 1470 196 103 56 chr15 25864459 25864837 -75515684 - MSTD LTR MaLR 0 396 1 2564 62 0 0 chr15 25864840 25865145 -75515376 + AluY SINE Alu 1 305 -6 476 295 19 0 chr15 25865263 25865419 -75515102 - L1ME3 LINE L1 -957 5189 5031 21 0 0 0 chr15 25865715 25865736 -75514785 + AT_rich Low_complexity Low_complexity 1 21 0 717 277 104 6 chr15 25866004 25866357 -75514164 - MER57A LTR ERV1 0 403 41 1913 141 0 0 chr15 25868138 25868415 -75512106 - AluSx SINE Alu -4 308 32 351 234 113 96 chr15 25868494 25868776 -75511745 - L1MC5 LINE L1 -980 6981 6695 270 0 0 0 chr15 25869087 25869117 -75511404 + (A)n Simple_repeat Simple_repeat 1 30 0 2103 136 0 13 chr15 25870668 25870984 -75509537 + AluSx SINE Alu 1 312 0 1381 257 117 45 chr15 25871154 25871780 -75508741 - HAL1 LINE L1 -24 2483 1813 2688 146 37 2 chr15 25871989 25872420 -75508101 - MER7C DNA MER2_type -156 446 1 1136 284 61 50 chr15 25872438 25872896 -75507625 - MER21B LTR ERV1 -396 467 5 360 241 288 4 chr15 25872904 25873140 -75507381 - HAL1 LINE L1 -695 1812 1510 390 213 16 39 chr15 25873241 25873368 -75507153 + CT-rich Low_complexity Low_complexity 3 126 0 703 254 130 52 chr15 25873377 25873507 -75507014 - HAL1 LINE L1 -1542 965 846 337 39 19 19 chr15 25873507 25873559 -75506962 + (TG)n Simple_repeat Simple_repeat 1 52 0 703 254 130 52 chr15 25873559 25873790 -75506731 - HAL1 LINE L1 -1661 846 576 2938 228 52 47 chr15 25874006 25874812 -75505709 + L1M4 LINE L1 5 814 -5728 333 220 11 33 chr15 25874812 25874903 -75505618 + L1M4 LINE L1 737 825 -5717 295 218 23 11 chr15 25874878 25874965 -75505556 + L1M4 LINE L1 727 814 -5728 * 296 164 16 0 chr15 25874963 25875024 -75505497 + L1M4 LINE L1 735 796 -5746 3116 249 64 45 chr15 25875030 25875321 -75505200 + L1M4 LINE L1 727 1011 -5814 2356 88 0 3 chr15 25875321 25875616 -75504905 - AluSc SINE Alu -15 294 1 3116 249 64 45 chr15 25875616 25877068 -75503453 + L1M4 LINE L1 1011 2647 -4178 1472 213 11 0 chr15 25877068 25877341 -75503180 + AluJo SINE Alu 3 278 -34 3116 249 64 45 chr15 25877341 25877603 -75502918 + L1M4 LINE L1 2647 2903 -3922 1226 105 0 0 chr15 25877619 25877781 -75502740 + AluSg/x SINE Alu 143 304 -8 848 227 35 11 chr15 25877782 25878045 -75502476 + L1M4 LINE L1 2871 3135 -3509 469 151 140 26 chr15 25878186 25878362 -75502159 + L1M4 LINE L1 5177 5370 -812 1705 193 0 3 chr15 25878401 25878712 -75501809 + AluJo SINE Alu 1 310 -2 235 218 18 0 chr15 25878714 25878769 -75501752 + L1MB7 LINE L1 6108 6163 -21 22 0 0 0 chr15 25878978 25879000 -75501521 + AT_rich Low_complexity Low_complexity 1 22 0 593 228 54 58 chr15 25879112 25879246 -75501275 - L1ME1 LINE L1 -5 6421 6287 180 0 0 0 chr15 25879246 25879266 -75501255 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 593 228 54 58 chr15 25879266 25879355 -75501166 - L1ME1 LINE L1 -139 6287 6199 * 2185 249 80 26 chr15 25879350 25879712 -75500809 - L1ME1 LINE L1 -816 5590 5249 2585 74 0 3 chr15 25879712 25880024 -75500497 - AluY SINE Alu 0 311 1 2185 249 80 26 chr15 25880024 25880532 -75499989 - L1ME1 LINE L1 -1157 5249 4673 2294 144 76 13 chr15 25880534 25880931 -75499590 + MSTB LTR MaLR 3 424 -2 9541 176 11 18 chr15 25880933 25882594 -75497927 + MSTB-int LTR MaLR 3 1651 0 2401 180 65 0 chr15 25882594 25882994 -75497527 + MSTB LTR MaLR 1 426 0 202 239 15 30 chr15 25882999 25883066 -75497455 + CT-rich Low_complexity Low_complexity 4 69 0 180 111 0 0 chr15 25883074 25883101 -75497420 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 4834 245 44 75 chr15 25883113 25883720 -75496801 - L1ME1 LINE L1 -1755 4651 4027 2055 100 25 4 chr15 25883720 25884039 -75496482 - AluSq SINE Alu 0 325 1 4834 245 44 75 chr15 25884039 25885692 -75494829 - L1ME1 LINE L1 -2379 4027 2460 6347 159 20 24 chr15 25885697 25886704 -75493817 - L1MC1 LINE L1 -1 6332 5330 2476 153 40 26 chr15 25886704 25887130 -75493391 - MSTB1 LTR MaLR 0 432 1 6347 159 20 24 chr15 25887130 25887566 -75492955 - L1MC1 LINE L1 -1003 5330 4894 12759 123 29 10 chr15 25887616 25890391 -75490130 + L1PA10 LINE L1 3373 6163 -5 3523 196 94 43 chr15 25890412 25891541 -75488980 - L1ME1 LINE L1 -3971 2435 1251 21 82 0 0 chr15 25891734 25891783 -75488738 + AT_rich Low_complexity Low_complexity 1 49 0 1253 144 0 6 chr15 25891944 25892125 -75488396 + AluSx SINE Alu 1 180 -132 1896 196 41 21 chr15 25892185 25892573 -75487948 + MSTD LTR MaLR 1 396 0 2192 115 14 0 chr15 25893925 25894220 -75486301 - AluSq SINE Alu -14 299 1 392 120 22 76 chr15 25894510 25894602 -75485919 + HsTC2 DNA Tc2 1 87 -1811 265 287 66 55 chr15 25894821 25895093 -75485428 - L1MEc LINE L1 -4706 1604 1330 31 26 0 0 chr15 25895096 25895134 -75485387 + AT_rich Low_complexity Low_complexity 1 38 0 2479 73 3 0 chr15 25895179 25895481 -75485040 + AluY SINE Alu 1 303 -8 10153 204 70 18 chr15 25895523 25896235 -75484286 - L1MC3 LINE L1 -39 8164 7490 180 77 0 0 chr15 25896235 25896261 -75484260 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 10153 204 70 18 chr15 25896261 25898185 -75482336 - L1MC3 LINE L1 -713 7490 5396 3307 226 54 82 chr15 25898209 25899804 -75480717 - L1MC3 LINE L1 -4850 1195 1 832 296 103 77 chr15 25899860 25901071 -75479450 - L1MEc LINE L1 -4872 1247 5 28 29 0 0 chr15 25901553 25901588 -75478933 + AT_rich Low_complexity Low_complexity 1 35 0 2323 84 40 0 chr15 25903741 25904039 -75476482 - AluY SINE Alu -1 310 1 281 256 0 67 chr15 25904112 25904202 -75476319 - MIR SINE MIR -60 148 65 1763 231 45 27 chr15 25904364 25904878 -75475643 - Charlie1b DNA MER1_type 0 523 1 378 221 31 24 chr15 25905363 25905490 -75475031 - L1M4 LINE L1 -777 5369 5242 1453 194 65 26 chr15 25906393 25906744 -75473777 + MLT1A1 LTR MaLR 1 365 0 342 0 0 0 chr15 25907964 25908002 -75472519 + (CA)n Simple_repeat Simple_repeat 2 39 0 2099 225 124 37 chr15 25910874 25911214 -75469307 - Charlie2 DNA MER1_type -33 2829 2520 1978 121 0 28 chr15 25911214 25911539 -75468982 - AluSx SINE Alu 0 317 1 2099 225 124 37 chr15 25911539 25912086 -75468435 - Charlie2 DNA MER1_type -342 2520 1864 732 69 0 0 chr15 25912305 25912392 -75468129 + AluSc SINE Alu 83 169 -140 1446 135 4 13 chr15 25912497 25912727 -75467794 + AluSg/x SINE Alu 83 310 0 888 309 56 47 chr15 25913046 25913964 -75466557 + L2 LINE L2 2373 3313 0 207 176 0 0 chr15 25914605 25914639 -75465882 + GA-rich Low_complexity Low_complexity 3 36 0 769 98 22 44 chr15 25914639 25914822 -75465699 + (GGA)n Simple_repeat Simple_repeat 2 180 0 284 215 21 21 chr15 25915647 25915740 -75464781 + L1M4c LINE L1 1132 1224 -5160 * 1720 226 51 23 chr15 25915739 25916856 -75463665 + L1M4c LINE L1 1540 2782 -3600 1013 265 109 39 chr15 25916856 25917275 -75463246 - MLT1C LTR MaLR 0 467 2 2192 133 3 46 chr15 25917539 25917907 -75462614 + MSTA LTR MaLR 1 352 -76 910 235 118 42 chr15 25918847 25919136 -75461385 - MER21B LTR ERV1 -62 801 491 68 42 0 0 chr15 25919136 25919232 -75461289 + AT_rich Low_complexity Low_complexity 1 96 0 382 146 126 215 chr15 25919488 25919735 -75460786 - MER21B LTR ERV1 -627 236 12 230 328 0 0 chr15 25919775 25919833 -75460688 + C-rich Low_complexity Low_complexity 4 61 0 181 264 56 56 chr15 25920577 25920649 -75459872 - MIR SINE MIR -70 138 67 3609 76 41 6 chr15 25920760 25921244 -75459277 - MER41A LTR ERV1 -53 501 1 530 267 40 65 chr15 25922339 25922586 -75457935 + MER46C DNA MER2_type 2 242 -96 459 320 32 20 chr15 25924107 25924354 -75456167 - L1M4 LINE L1 -6269 273 24 327 239 122 22 chr15 25924393 25924573 -75455948 + L1MEc LINE L1 1774 1971 -4425 22 35 0 0 chr15 25924621 25924650 -75455871 + AT_rich Low_complexity Low_complexity 1 29 0 372 130 0 0 chr15 25925010 25925079 -75455442 + (TC)n Simple_repeat Simple_repeat 2 70 0 261 0 0 0 chr15 25925080 25925109 -75455412 + (TA)n Simple_repeat Simple_repeat 1 29 0 238 185 62 0 chr15 25925111 25925192 -75455329 - L1M4c LINE L1 -5504 880 795 271 243 48 0 chr15 25925195 25925298 -75455223 + (TA)n Simple_repeat Simple_repeat 1 108 0 1017 252 82 18 chr15 25925299 25925628 -75454893 - MLT2D LTR ERVL -64 350 1 6077 168 45 37 chr15 25925630 25925856 -75454665 - ERVL-D LTR ERVL -11 5753 5530 2478 80 0 0 chr15 25925856 25926155 -75454366 + AluY SINE Alu 1 299 -12 6077 168 45 37 chr15 25926155 25926272 -75454249 - ERVL-D LTR ERVL -234 5530 5415 2299 125 0 0 chr15 25926272 25926584 -75453937 + AluSx SINE Alu 1 312 0 6077 168 45 37 chr15 25926584 25927408 -75453113 - ERVL-D LTR ERVL -349 5415 4576 1841 214 16 3 chr15 25928268 25928651 -75451870 - MLT1B LTR MaLR 0 390 3 806 183 154 6 chr15 25929022 25929054 -75451467 + AluJo SINE Alu 86 112 -200 192 77 0 0 chr15 25929054 25929080 -75451441 + (CAA)n Simple_repeat Simple_repeat 2 27 0 806 183 154 6 chr15 25929080 25929222 -75451299 + AluJo SINE Alu 112 286 -26 591 173 0 0 chr15 25929222 25929332 -75451189 + (TA)n Simple_repeat Simple_repeat 1 110 0 367 276 136 67 chr15 25929916 25930394 -75450127 - MLT1H1 LTR MaLR -8 547 37 1018 258 63 3 chr15 25932256 25932558 -75447963 - LTR16C LTR ERVL -22 469 150 2591 148 35 0 chr15 25933154 25933560 -75446961 + MSTC LTR MaLR 9 428 0 253 290 10 40 chr15 25933847 25933947 -75446574 - L2 LINE L2 -1 3271 3175 628 244 45 29 chr15 25934247 25934604 -75445917 + LTR37A LTR ERV1 26 424 -2 182 287 16 57 chr15 25934606 25934728 -75445793 - L2 LINE L2 -379 2934 2818 22 0 0 0 chr15 25934831 25934853 -75445668 + AT_rich Low_complexity Low_complexity 1 22 0 233 192 0 0 chr15 25935343 25935395 -75445126 - MIR SINE MIR -134 128 77 261 0 0 0 chr15 25935620 25935649 -75444872 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 413 263 0 0 chr15 25936852 25936947 -75443574 - MER94 DNA DNA -1 133 39 311 300 9 9 chr15 25937833 25937943 -75442578 - L1M4 LINE L1 -1160 4986 4877 25 0 0 0 chr15 25938163 25938188 -75442333 + AT_rich Low_complexity Low_complexity 1 25 0 349 326 54 44 chr15 25939324 25939711 -75440810 + L1M4 LINE L1 2133 2523 -3623 1346 201 13 42 chr15 25939973 25940282 -75440239 + MLT1A1 LTR MaLR 1 300 -65 184 338 25 12 chr15 25940994 25941074 -75439447 - MER5A DNA MER1_type -39 150 70 7113 242 78 35 chr15 25942036 25945815 -75434706 - L1MD2 LINE L1 -29 6724 2685 185 0 40 0 chr15 25945822 25945847 -75434674 + (TA)n Simple_repeat Simple_repeat 2 27 0 1616 213 76 52 chr15 25945847 25947759 -75432762 - L1MD2 LINE L1 -4073 2467 59 841 206 44 40 chr15 25947763 25948072 -75432449 - MLT1A2 LTR MaLR -4 405 97 399 286 101 68 chr15 25948805 25949172 -75431349 + L1MEd LINE L1 292 670 -5449 2191 121 3 0 chr15 25949439 25949746 -75430775 - AluSx SINE Alu -4 308 1 392 291 127 28 chr15 25950021 25950234 -75430287 + L1MEd LINE L1 849 1082 -5037 333 252 211 0 chr15 25950245 25950368 -75430153 - MIR SINE MIR 0 262 114 762 241 91 44 chr15 25950528 25950935 -75429586 - LTR37A LTR ERV1 0 426 1 452 294 53 50 chr15 25950949 25951377 -75429144 + L1MEd LINE L1 1213 1690 -800 2330 86 0 23 chr15 25951500 25951802 -75428719 + AluSx SINE Alu 5 299 -13 2687 26 3 3 chr15 25952038 25952349 -75428172 + AluYa5 SINE Alu 1 311 0 300 242 135 68 chr15 25952505 25952890 -75427631 + L1MEd LINE L1 2194 2604 -3525 200 114 29 0 chr15 25953013 25953048 -75427473 + (TG)n Simple_repeat Simple_repeat 1 36 0 629 167 19 0 chr15 25953128 25953236 -75427285 + L1MC/D LINE L1 5599 5708 -625 519 264 121 19 chr15 25953310 25953625 -75426896 + L1MEd LINE L1 3053 3399 -2730 6356 143 21 21 chr15 25953652 25954014 -75426507 - L1MC1 LINE L1 -5 6328 5968 2280 89 0 0 chr15 25954014 25954341 -75426180 - AluSx SINE Alu 0 327 1 6356 143 21 21 chr15 25954341 25955144 -75425377 - L1MC1 LINE L1 -365 5968 5161 10598 50 6 1 chr15 25955213 25957315 -75423206 - L1PA6 LINE L1 -4 6150 4047 267 119 68 8 chr15 25958260 25958378 -75422143 + (TG)n Simple_repeat Simple_repeat 2 126 0 245 143 68 15 chr15 25958392 25958660 -75421861 + (TG)n Simple_repeat Simple_repeat 1 282 0 321 114 60 20 chr15 25958696 25958845 -75421676 + (TG)n Simple_repeat Simple_repeat 1 155 0 239 318 56 0 chr15 25959471 25959578 -75420943 + L1ME LINE L1 5615 5727 -394 3832 27 0 0 chr15 25959906 25960344 -75420177 - L1PA3 LINE L1 -7 6148 5711 982 9 0 0 chr15 25960344 25960451 -75420070 - U6 snRNA snRNA 0 107 1 22 0 0 0 chr15 25962012 25962034 -75418487 + AT_rich Low_complexity Low_complexity 1 22 0 2400 230 20 52 chr15 25962037 25962120 -75418401 - L1MA9 LINE L1 -38 6274 6190 474 65 0 0 chr15 25962120 25962182 -75418339 + (TA)n Simple_repeat Simple_repeat 1 62 0 2400 230 20 52 chr15 25962182 25962854 -75417667 - L1MA9 LINE L1 -122 6190 5543 9747 205 34 13 chr15 25962865 25965209 -75415312 - L1MA9 LINE L1 -743 5403 3011 1056 187 60 60 chr15 25965225 25965508 -75415013 + L1MD2 LINE L1 6075 6357 -2 2046 114 4 0 chr15 25965916 25966188 -75414333 - AluSg SINE Alu -8 302 30 357 82 0 0 chr15 25973171 25973220 -75407301 + (TG)n Simple_repeat Simple_repeat 1 49 0 6385 17 1 0 chr15 25973552 25974265 -75406256 + L1PA3 LINE L1 5442 6155 0 244 233 29 24 chr15 25975950 25976034 -75404487 - MIR SINE MIR -55 153 69 1642 167 7 24 chr15 25976086 25976380 -75404141 - AluJo SINE Alu -23 289 1 2114 190 28 2 chr15 25977212 25977648 -75402873 - L1 LINE L1 -2369 3777 3331 2180 84 7 7 chr15 25977651 25977948 -75402573 - AluY SINE Alu -10 301 5 369 43 0 0 chr15 25977959 25978006 -75402515 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 56 0 0 chr15 25978103 25978139 -75402382 + GC_rich Low_complexity Low_complexity 1 36 0 1962 97 10 34 chr15 25979015 25979313 -75401208 + AluSq SINE Alu 1 291 -22 2058 86 0 95 chr15 25979314 25979651 -75400870 - AluSg SINE Alu -5 305 1 2355 68 0 10 chr15 25979834 25980160 -75400361 - AluY SINE Alu 0 311 1 1350 122 5 0 chr15 25980160 25980349 -75400172 + Charlie3 DNA MER1_type 2517 2706 -4 1304 146 5 0 chr15 25980351 25980571 -75399950 - L1MB3 LINE L1 -259 5924 5704 2067 130 0 3 chr15 25980646 25980931 -75399590 - AluSx SINE Alu -28 284 1 3655 202 44 20 chr15 25980931 25981891 -75398630 - L1MB3 LINE L1 -724 5460 4475 2425 86 0 0 chr15 25982142 25982445 -75398076 + AluY SINE Alu 1 303 -8 1680 155 17 24 chr15 25982582 25982872 -75397649 - AluJb SINE Alu -17 295 8 405 113 141 0 chr15 25983019 25983090 -75397431 - AluJ/FRAM SINE Alu -16 296 216 2039 85 0 0 chr15 25983356 25983603 -75396918 - AluSg SINE Alu -63 247 1 940 95 0 0 chr15 25984116 25984232 -75396289 + AluSq/x SINE Alu 1 116 -197 801 144 8 0 chr15 25984232 25984357 -75396164 + AluSc SINE Alu 166 291 -18 1165 155 5 0 chr15 25984357 25984544 -75395977 + AluSx SINE Alu 121 308 -4 252 299 41 0 chr15 25984642 25984739 -75395782 + MIR SINE MIR 92 192 -70 2457 86 0 13 chr15 25985715 25986030 -75394491 - AluY SINE Alu 0 311 1 1626 71 40 22 chr15 25986315 25986541 -75393980 + MER30 DNA MER1_type 1 230 0 972 155 42 237 chr15 25986632 25986782 -75393739 - L1MD3 LINE L1 -10 7985 7808 622 204 15 8 chr15 25986782 25986914 -75393607 + U8 snRNA snRNA 4 136 0 972 155 42 237 chr15 25986914 25987138 -75393383 - L1MD3 LINE L1 -187 7808 7542 195 42 0 0 chr15 25987138 25987162 -75393359 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2003 110 0 0 chr15 25987163 25987426 -75393095 - AluSg SINE Alu -47 263 1 972 155 42 237 chr15 25987426 25987572 -75392949 - L1MD3 LINE L1 -258 7737 7564 328 279 38 51 chr15 25988044 25988202 -75392319 + L2 LINE L2 3158 3313 0 23 33 0 0 chr15 25988295 25988325 -75392196 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr15 25989089 25989117 -75391404 + AT_rich Low_complexity Low_complexity 1 28 0 2095 119 3 0 chr15 25990498 25990792 -75389729 + AluSq SINE Alu 19 313 0 24 67 0 0 chr15 25991423 25991468 -75389053 + AT_rich Low_complexity Low_complexity 1 45 0 827 150 0 15 chr15 25991773 25991906 -75388615 - FLAM_C SINE Alu -1 132 2 309 263 130 47 chr15 25992227 25992440 -75388081 + MIR SINE MIR 3 225 -37 1857 79 126 14 chr15 25992440 25992718 -75387803 - AluY SINE Alu -2 309 1 406 306 32 24 chr15 25993680 25993928 -75386593 - L1ME LINE L1 -400 5721 5472 241 173 0 0 chr15 25994011 25994063 -75386458 - L1MB3 LINE L1 -14 6169 6118 1770 95 0 9 chr15 25994063 25994294 -75386227 + AluY SINE Alu 68 296 -15 27311 103 14 10 chr15 25995612 25999554 -75380967 - L1P LINE L1 -2180 3966 11 406 272 38 46 chr15 25999565 25999804 -75380717 + L1M4 LINE L1 3725 3961 -2185 429 276 31 69 chr15 26000286 26000547 -75379974 + L1M4 LINE L1 4578 4828 -1318 1392 153 25 8 chr15 26000680 26000915 -75379606 + L1PA16 LINE L1 5919 6157 -9 876 153 7 0 chr15 26000923 26001098 -75379423 + FRAM SINE Alu 10 185 0 30 27 0 0 chr15 26003519 26003556 -75376965 + AT_rich Low_complexity Low_complexity 1 37 0 1668 180 3 23 chr15 26003557 26003862 -75376659 - AluJo SINE Alu -11 301 3 245 320 0 13 chr15 26004486 26004561 -75375960 + CT-rich Low_complexity Low_complexity 4 77 0 1643 202 85 50 chr15 26005580 26005669 -75374852 - MER74A LTR ERVL -24 534 450 2220 100 3 3 chr15 26005669 26005958 -75374563 + AluSg SINE Alu 1 289 -21 1643 202 85 50 chr15 26005958 26006384 -75374137 - MER74A LTR ERVL -108 450 1 2367 90 0 7 chr15 26006645 26006945 -75373576 + AluY SINE Alu 1 298 -13 413 179 11 42 chr15 26008382 26008477 -75372044 + MLT1A2 LTR MaLR 14 105 -269 820 237 17 23 chr15 26008485 26008658 -75371863 + MER21B LTR ERV1 12 183 -680 964 217 83 24 chr15 26008979 26009232 -75371289 - L1MB8 LINE L1 0 6178 5911 243 0 0 0 chr15 26009744 26009771 -75370750 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1497 182 28 21 chr15 26009775 26010066 -75370455 - AluJo SINE Alu -19 293 1 201 39 0 0 chr15 26010200 26010226 -75370295 + (CA)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr15 26011148 26011170 -75369351 + AT_rich Low_complexity Low_complexity 1 22 0 364 264 91 8 chr15 26012100 26012221 -75368300 - MIR3 SINE MIR -40 168 38 1830 164 12 84 chr15 26013664 26014078 -75366443 - MLT1B LTR MaLR -4 386 3 924 199 49 29 chr15 26014431 26014677 -75365844 - MLT1A1 LTR MaLR -16 349 99 3121 213 81 39 chr15 26014718 26015485 -75365036 - MER21B LTR ERV1 -53 810 12 413 179 11 42 chr15 26015493 26015588 -75364933 - MLT1A1 LTR MaLR -269 105 14 2254 109 0 13 chr15 26016446 26016748 -75363773 - AluSg SINE Alu -12 298 1 1066 147 0 40 chr15 26017768 26017945 -75362576 + FRAM SINE Alu 1 40 0 289 309 0 0 chr15 26019157 26019241 -75361280 + MIR3 SINE MIR 73 156 -52 480 230 111 15 chr15 26019858 26019993 -75360528 + MER58A DNA MER1_type 1 148 0 868 263 55 15 chr15 26020097 26020560 -75359961 - MER119 DNA MER1_type -1 582 5 183 146 122 0 chr15 26020585 26020626 -75359895 - MIR SINE MIR -69 139 94 204 40 0 0 chr15 26021955 26021980 -75358541 + (TTTTTA)n Simple_repeat Simple_repeat 6 30 0 1532 88 0 16 chr15 26022774 26022968 -75357553 - AluY SINE Alu -47 264 74 209 114 29 0 chr15 26023238 26023273 -75357248 + (TG)n Simple_repeat Simple_repeat 1 36 0 902 301 68 37 chr15 26023824 26024416 -75356105 - L1MC4a LINE L1 -1915 6153 5544 332 332 93 18 chr15 26025009 26025235 -75355286 - L1MC4a LINE L1 -1604 4802 4560 280 317 106 22 chr15 26025278 26025638 -75354883 - L1MC4a LINE L1 -1949 4457 4068 22 0 0 0 chr15 26025935 26025957 -75354564 + AT_rich Low_complexity Low_complexity 1 22 0 1383 171 95 29 chr15 26027020 26027212 -75353309 - L1MB3 LINE L1 -1 6182 5959 2163 131 0 3 chr15 26027212 26027518 -75353003 - AluSx SINE Alu -7 305 1 1383 171 95 29 chr15 26027518 26027641 -75352880 - L1MB3 LINE L1 -224 5959 5846 2126 99 16 59 chr15 26027645 26027968 -75352553 - AluSx SINE Alu -3 309 1 346 333 45 31 chr15 26027982 26028202 -75352319 - L1MC4a LINE L1 -3044 3362 3134 632 125 0 29 chr15 26028202 26028306 -75352215 - HY3 scRNA scRNA 0 101 1 346 333 45 31 chr15 26028306 26028442 -75352079 - L1MC4a LINE L1 -3272 3134 3001 2318 225 149 19 chr15 26028712 26029423 -75351098 - MER21B LTR ERV1 -31 832 40 437 205 13 0 chr15 26029462 26029540 -75350981 - MER21B LTR ERV1 -773 90 12 2283 99 0 0 chr15 26031931 26032224 -75348297 - AluSx SINE Alu -13 299 7 1770 168 36 0 chr15 26032229 26032538 -75347983 + MER44D DNA MER2_type 18 607 -2 2071 156 33 0 chr15 26033350 26033716 -75346805 + MLT1B LTR MaLR 2 379 -11 208 270 101 11 chr15 26033917 26034006 -75346515 - MIR SINE MIR -72 136 40 1140 121 0 0 chr15 26034222 26034379 -75346142 - AluSp SINE Alu -17 296 140 2234 117 0 0 chr15 26035111 26035411 -75345110 + AluSx SINE Alu 1 300 -12 28689 31 4 4 chr15 26036384 26042545 -75337976 + L1PA3 LINE L1 7 6155 0 1562 226 41 13 chr15 26042620 26043085 -75337436 - L1MC4a LINE L1 -5264 1145 668 546 266 172 10 chr15 26043117 26043519 -75337002 - L1MC4a LINE L1 -5934 475 9 1998 204 31 47 chr15 26044007 26044156 -75336365 + MER90 LTR ERV1 6 156 -458 2506 72 0 3 chr15 26044156 26044460 -75336061 + AluY SINE Alu 1 303 -8 1998 204 31 47 chr15 26044460 26044883 -75335638 + MER90 LTR ERV1 156 610 -4 2029 112 49 3 chr15 26045647 26045933 -75334588 - AluSx SINE Alu -13 299 1 241 145 72 58 chr15 26046281 26046350 -75334171 + MER53 DNA DNA 119 188 -1 1754 213 81 29 chr15 26047627 26048107 -75332414 - MLT1D LTR MaLR 0 505 1 208 320 102 31 chr15 26048325 26048453 -75332068 - MIR SINE MIR -35 227 91 378 229 35 83 chr15 26048771 26048885 -75331636 - MER5A DNA MER1_type -6 183 75 1776 139 40 7 chr15 26048885 26049201 -75331320 - AluY SINE Alu 0 326 2 378 229 35 83 chr15 26049201 26049229 -75331292 - MER5A DNA MER1_type -114 75 47 1869 118 129 26 chr15 26049272 26049612 -75330909 - THE1C LTR MaLR 0 375 1 2061 88 25 63 chr15 26051373 26051692 -75328829 + AluY SINE Alu 1 307 -4 332 265 131 29 chr15 26052592 26052837 -75327684 + L1MC4a LINE L1 970 1239 -4880 46 46 0 46 chr15 26052948 26053056 -75327465 + AT_rich Low_complexity Low_complexity 1 103 0 344 268 76 82 chr15 26053320 26053648 -75326873 + L1MC4a LINE L1 3613 3938 -2191 336 252 69 23 chr15 26054214 26054345 -75326176 - MLT1J1 LTR MaLR -167 279 143 1156 262 78 31 chr15 26054394 26054818 -75325703 - MLT1J1 LTR MaLR -2 444 1 7982 34 0 3 chr15 26054980 26056187 -75324334 + L1PA4 LINE L1 4951 6154 -1 748 211 79 152 chr15 26056278 26056503 -75324018 - MLT1A1 LTR MaLR 0 365 180 2189 138 76 15 chr15 26056503 26056844 -75323677 - THE1B LTR MaLR -2 362 1 748 211 79 152 chr15 26056844 26057012 -75323509 - MLT1A1 LTR MaLR -185 180 1 2307 173 38 26 chr15 26057069 26057496 -75323025 - MSTB1 LTR MaLR 0 432 1 1780 170 22 41 chr15 26057604 26057969 -75322552 + L1MB3 LINE L1 5798 6155 -28 21 57 0 0 chr15 26057977 26058012 -75322509 + AT_rich Low_complexity Low_complexity 1 35 0 308 292 49 49 chr15 26058237 26058463 -75322058 + L1MC4a LINE L1 4998 5223 -906 763 326 110 12 chr15 26058479 26059050 -75321471 + L1MC4a LINE L1 5239 5865 -1926 307 264 8 72 chr15 26059228 26059353 -75321168 - MLT1H LTR MaLR -238 311 195 271 308 54 32 chr15 26060347 26060532 -75319989 + ERVL LTR ERVL 514 702 -5062 781 334 46 13 chr15 26061012 26061421 -75319100 + ERVL LTR ERVL 2644 3111 -2638 2138 114 0 0 chr15 26061450 26061778 -75318743 + AluSg SINE Alu 1 328 0 1200 283 114 27 chr15 26061793 26062663 -75317858 + ERVL LTR ERVL 3229 4216 -1548 486 351 101 4 chr15 26062835 26063083 -75317438 + ERVL LTR ERVL 4769 5040 -724 1683 225 46 38 chr15 26063214 26063387 -75317134 + MLT1C LTR MaLR 3 173 -294 2416 71 7 0 chr15 26063387 26063684 -75316837 + AluY SINE Alu 1 299 -12 1683 225 46 38 chr15 26063684 26063963 -75316558 + MLT1C LTR MaLR 173 459 -8 411 266 0 9 chr15 26063967 26064076 -75316445 + ERVL LTR ERVL 5172 5279 -485 5900 132 20 28 chr15 26064198 26064220 -75316301 + MER49 LTR ERV1 1 22 -901 1843 136 0 74 chr15 26064220 26064543 -75315978 + AluSx SINE Alu 1 299 -13 5900 132 20 28 chr15 26064543 26065450 -75315071 + MER49 LTR ERV1 22 923 0 576 191 18 12 chr15 26066410 26066578 -75313943 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 2275 115 3 0 chr15 26067881 26068186 -75312335 - AluSq SINE Alu -5 308 3 2262 104 0 7 chr15 26068197 26068505 -75312016 - AluY SINE Alu -5 306 1 21955 195 46 6 chr15 26069801 26073970 -75306551 - ERVL LTR ERVL -788 4976 550 3304 252 53 26 chr15 26074108 26075351 -75305170 + L1MC2 LINE L1 2626 3902 -2244 2000 143 181 8 chr15 26075351 26075716 -75304805 + MSTA LTR MaLR 1 428 0 9905 132 12 85 chr15 26075718 26077420 -75303101 + MSTA-int LTR MaLR 3 1580 0 403 113 238 0 chr15 26077420 26077500 -75303021 + MSTA LTR MaLR 1 99 -329 985 145 134 0 chr15 26077502 26077681 -75302840 + MSTA LTR MaLR 226 428 0 1294 253 6 10 chr15 26077681 26077993 -75302528 + L1MC2 LINE L1 3898 4208 -1938 1402 247 118 34 chr15 26077996 26078113 -75302408 - MLT1D LTR MaLR 0 505 399 2356 151 28 13 chr15 26078113 26078503 -75302018 + MSTD LTR MaLR 1 396 0 1402 247 118 34 chr15 26078503 26078851 -75301670 - MLT1D LTR MaLR -106 399 1 865 263 23 7 chr15 26078855 26079155 -75301366 + L1MC2 LINE L1 4211 4515 -1631 1043 327 86 22 chr15 26079170 26079862 -75300659 + L1MA9 LINE L1 106 770 -5185 423 245 71 71 chr15 26079927 26080082 -75300439 + L1MA9 LINE L1 635 789 -5166 11728 197 21 28 chr15 26080083 26082397 -75298124 + L1MA9 LINE L1 2544 4851 -1349 2176 99 0 38 chr15 26082397 26082711 -75297810 + AluSp SINE Alu 1 302 -11 11728 197 21 28 chr15 26082711 26083537 -75296984 + L1MA9 LINE L1 4851 5681 -519 306 160 20 120 chr15 26083563 26083663 -75296858 - L1MC4 LINE L1 -1339 6703 6614 301 233 35 23 chr15 26083600 26083686 -75296835 + L1MC4 LINE L1 6615 6701 -1341 * 2759 163 27 17 chr15 26083703 26084226 -75296295 + L1MA9 LINE L1 5673 6200 0 2951 206 73 10 chr15 26084230 26085221 -75295300 + L1MC2 LINE L1 4980 6034 -310 2795 98 40 10 chr15 26085222 26085622 -75294899 - L1MA2 LINE L1 0 6304 5893 796 171 76 0 chr15 26085657 26085815 -75294706 + L1MC3 LINE L1 7118 7287 -498 1453 213 53 36 chr15 26085818 26086042 -75294479 + L1MC3 LINE L1 7364 7600 -185 2397 75 3 0 chr15 26086042 26086336 -75294185 + AluSp SINE Alu 1 295 -18 1453 213 53 36 chr15 26086336 26086524 -75293997 + L1MC3 LINE L1 7600 7783 -2 240 244 134 12 chr15 26086570 26086652 -75293869 - LTR67 LTR ERVL -367 190 99 1010 230 8 28 chr15 26087054 26087302 -75293219 - LTR53 LTR ERVL -88 431 189 293 266 25 0 chr15 26089191 26089270 -75291251 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 189 215 25 13 chr15 26089282 26089361 -75291160 + (TA)n Simple_repeat Simple_repeat 2 81 0 2649 29 7 3 chr15 26089398 26089705 -75290816 - AluY SINE Alu -3 308 1 212 359 26 0 chr15 26091761 26091839 -75288682 - L2 LINE L2 -553 2761 2682 2508 198 29 2 chr15 26092510 26092986 -75287535 - L1MB3 LINE L1 -2 6181 5693 397 343 18 24 chr15 26093172 26093341 -75287180 + MIR SINE MIR 88 255 -7 1527 150 108 119 chr15 26093679 26093958 -75286563 + MLT1C LTR MaLR 1 274 -193 2823 148 14 5 chr15 26093958 26094377 -75286144 - MSTB LTR MaLR 0 426 4 1527 150 108 119 chr15 26094377 26094569 -75285952 + MLT1C LTR MaLR 274 467 0 2120 121 3 7 chr15 26095542 26095840 -75284681 - AluSx SINE Alu -13 299 3 2554 44 0 0 chr15 26096186 26096482 -75284039 - AluY SINE Alu -14 297 2 24 32 0 0 chr15 26096717 26096748 -75283773 + AT_rich Low_complexity Low_complexity 1 31 0 7476 143 26 13 chr15 26097365 26098578 -75281943 - Tigger3b DNA MER2_type -3 1228 1 2208 114 13 0 chr15 26098798 26099226 -75281295 + AluSx SINE Alu 1 432 0 1096 47 0 0 chr15 26099261 26099388 -75281133 - L1PA2 LINE L1 -2 6153 6027 2185 78 0 31 chr15 26099672 26099993 -75280528 - AluY SINE Alu 0 311 1 2613 42 0 3 chr15 26100291 26100603 -75279918 - AluY SINE Alu 0 311 1 240 218 26 39 chr15 26100833 26100911 -75279610 + MIR SINE MIR 168 244 -18 618 300 91 72 chr15 26101027 26101788 -75278733 - L1MC4 LINE L1 -136 7906 7132 4521 210 63 38 chr15 26102066 26103647 -75276874 - L1MD2 LINE L1 -14 6345 4741 2601 122 29 67 chr15 26103679 26104129 -75276392 + Tigger2a DNA MER2_type 1 433 -1 1583 181 59 25 chr15 26104136 26104457 -75276064 + MER2 DNA MER2_type 1 332 -13 349 181 194 0 chr15 26104463 26104535 -75275986 + MER21B LTR ERV1 11 96 -767 3110 231 46 10 chr15 26104535 26105434 -75275087 - L1MD2 LINE L1 -2200 3946 3016 1674 251 116 27 chr15 26105407 26106733 -75273788 - L1MDa LINE L1 -2525 3690 1740 * 348 209 118 0 chr15 26106734 26106875 -75273646 - L1MDa LINE L1 -4636 1579 1339 2358 95 3 13 chr15 26106879 26107194 -75273327 - AluSp SINE Alu -1 312 1 1012 145 0 7 chr15 26107196 26107348 -75273173 - FRAM SINE Alu -5 171 21 742 197 8 0 chr15 26107588 26107715 -75272806 - FLAM_C SINE Alu -3 130 3 983 273 48 28 chr15 26107771 26108171 -75272350 - L1MDa LINE L1 -5631 765 358 260 226 10 78 chr15 26108217 26108319 -75272202 - L1MDa LINE L1 -6013 383 289 3270 130 35 0 chr15 26108370 26108879 -75271642 - Tigger1 DNA MER2_type -420 1998 1472 24 32 0 0 chr15 26109266 26109297 -75271224 + AT_rich Low_complexity Low_complexity 1 31 0 2132 189 13 30 chr15 26110365 26110762 -75269759 - MLT1B LTR MaLR 0 390 1 421 236 79 21 chr15 26111652 26111792 -75268729 + MER67A LTR ERV1 396 543 0 556 152 29 9 chr15 26112435 26112540 -75267981 - MLT1B LTR MaLR 0 374 268 590 215 55 140 chr15 26113094 26113387 -75267134 - MLT1B LTR MaLR -122 268 1 1044 280 151 44 chr15 26113463 26114287 -75266234 + HAL1 LINE L1 957 1868 -639 681 203 36 0 chr15 26114505 26114643 -75265878 + MER5A DNA MER1_type 22 164 -25 263 242 61 53 chr15 26114530 26114662 -75265859 - MER5A DNA MER1_type -35 154 22 * 713 244 23 0 chr15 26114672 26114848 -75265673 + MER58A DNA MER1_type 45 224 0 13744 102 109 17 chr15 26115660 26115868 -75264653 - L1PBa LINE L1 -3752 3110 2923 1787 150 44 7 chr15 26115868 26116161 -75264360 - AluSx SINE Alu -8 304 1 13744 102 109 17 chr15 26116161 26116172 -75264349 - L1PBa LINE L1 -3939 2923 2914 2185 66 27 40 chr15 26116172 26116473 -75264048 - AluY SINE Alu -14 297 1 13744 102 109 17 chr15 26116473 26118516 -75262005 - L1PBa LINE L1 -3948 2914 634 1109 155 26 0 chr15 26118516 26118709 -75261812 - L1PBa LINE L1 -6663 200 3 729 94 0 0 chr15 26119367 26119463 -75261058 - LOR1a LTR ERV1 -401 96 1 993 108 28 34 chr15 26119463 26119639 -75260882 - L1MB4 LINE L1 -317 5863 5689 699 151 60 12 chr15 26119646 26119781 -75260740 - L1MB4 LINE L1 -711 5463 5315 2147 108 10 3 chr15 26119781 26120078 -75260443 - AluSx SINE Alu -13 299 1 699 151 60 12 chr15 26120078 26120109 -75260412 - L1MB4 LINE L1 -859 5315 5287 2034 114 3 17 chr15 26120491 26120789 -75259732 + AluSq SINE Alu 12 305 -8 691 170 44 11 chr15 26120791 26121057 -75259464 + L1MA9 LINE L1 5942 6312 0 24 0 0 0 chr15 26121060 26121084 -75259437 + AT_rich Low_complexity Low_complexity 1 24 0 3211 203 12 9 chr15 26121168 26121852 -75258669 + L1 LINE L1 3832 4517 -1629 271 319 60 9 chr15 26122581 26122697 -75257824 - MIR SINE MIR -56 152 31 1640 198 3 13 chr15 26122705 26123008 -75257513 + AluJo SINE Alu 1 300 -12 704 133 0 0 chr15 26123012 26123110 -75257411 - AluSg/x SINE Alu -10 300 203 2017 148 3 3 chr15 26123611 26123908 -75256613 - AluSx SINE Alu -15 297 1 32 0 0 0 chr15 26124295 26124327 -75256194 + AT_rich Low_complexity Low_complexity 1 32 0 1232 279 99 25 chr15 26124455 26124939 -75255582 + MLT1E LTR MaLR 1 520 -73 11683 28 0 0 chr15 26125039 26127104 -75253417 + L1PA3 LINE L1 4090 6155 0 2488 77 0 0 chr15 26127126 26127437 -75253084 + AluY SINE Alu 1 311 0 205 306 16 0 chr15 26128413 26128475 -75252046 - L2 LINE L2 -219 3053 2991 339 91 73 0 chr15 26128479 26128534 -75251987 + L1MB1 LINE L1 5789 5847 -342 228 356 30 15 chr15 26128999 26129131 -75251390 - MLT1I LTR MaLR -40 369 236 429 277 106 0 chr15 26129923 26130064 -75250457 - L1ME LINE L1 -484 5669 5514 2012 208 59 13 chr15 26130099 26130571 -75249950 - L1PA15 LINE L1 -1411 4735 4242 * 4117 212 23 37 chr15 26130566 26132027 -75248494 + L1PA15 LINE L1 4731 6164 -1 1011 286 58 25 chr15 26132036 26132754 -75247767 - L1ME LINE L1 -694 5453 4713 1782 141 10 47 chr15 26132807 26133104 -75247417 + AluJo SINE Alu 3 288 -24 784 112 5 53 chr15 26133131 26133319 -75247202 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 1983 194 29 0 chr15 26133326 26133707 -75246814 + L1MA8 LINE L1 5894 6285 -6 2198 99 41 0 chr15 26133716 26134010 -75246511 + AluSp SINE Alu 1 306 -7 2910 56 0 6 chr15 26134018 26134360 -75246161 + L1PA8 LINE L1 5825 6164 -8 3038 233 74 26 chr15 26134495 26135439 -75245082 - L1MC3 LINE L1 -8 7777 6789 521 238 105 68 chr15 26135413 26135661 -75244860 - L1ME LINE L1 -1978 4151 3895 * 190 260 78 39 chr15 26136577 26136654 -75243867 - MIR SINE MIR -113 149 70 248 302 0 0 chr15 26136831 26136894 -75243627 - MIR SINE MIR 0 262 200 2161 115 0 7 chr15 26136921 26137216 -75243305 + AluSx SINE Alu 1 293 -19 261 254 231 6 chr15 26137356 26137529 -75242992 - MLT1I LTR MaLR -197 212 1 413 259 14 58 chr15 26137546 26137685 -75242836 - MIR SINE MIR -58 150 18 2142 89 11 0 chr15 26137691 26137997 -75242524 - AluSp SINE Alu 0 309 1 313 183 0 0 chr15 26138001 26138061 -75242460 - L1MA8 LINE L1 0 6291 6232 2953 183 29 11 chr15 26138095 26138648 -75241873 - L1MA8 LINE L1 -47 6244 5682 216 282 150 77 chr15 26138703 26138923 -75241598 - MIR SINE MIR -21 241 6 336 337 10 10 chr15 26139081 26139182 -75241339 - MER91B DNA MER1_type 0 190 90 289 343 9 9 chr15 26139199 26139304 -75241217 - MER91B DNA MER1_type -61 129 25 390 340 125 24 chr15 26139684 26139972 -75240549 + L3 LINE CR1 733 1049 -528 29791 39 34 3 chr15 26140612 26144452 -75236069 + L1P LINE L1 1 3961 -2185 379 287 30 43 chr15 26144589 26144753 -75235768 - L1ME LINE L1 -2775 3354 3193 21 36 0 0 chr15 26144756 26144784 -75235737 + AT_rich Low_complexity Low_complexity 1 28 0 341 214 22 0 chr15 26144857 26144946 -75235575 - L1MC5 LINE L1 -72 7889 7799 2232 124 7 0 chr15 26145049 26145356 -75235165 - AluSx SINE Alu -3 309 1 532 332 84 8 chr15 26145433 26145683 -75234838 + L2 LINE L2 3045 3313 0 735 169 11 56 chr15 26146179 26146357 -75234164 - MER77 LTR ERV1 -20 585 416 * 1120 165 30 121 chr15 26146356 26146653 -75233868 - MER77 LTR ERV1 -335 270 1 393 290 65 0 chr15 26146653 26146777 -75233744 - L1M4 LINE L1 -1442 5406 5275 317 342 97 15 chr15 26147047 26147243 -75233278 - L1M4 LINE L1 -2532 4316 4105 511 234 69 58 chr15 26147287 26147475 -75233046 + MLT1F LTR MaLR 163 352 -190 189 0 0 0 chr15 26147475 26147496 -75233025 + (T)n Simple_repeat Simple_repeat 1 21 0 206 191 48 0 chr15 26147880 26147922 -75232599 - MIR SINE MIR -116 146 103 361 263 98 103 chr15 26148148 26148700 -75231821 - L1M4 LINE L1 -5516 1333 785 48 72 0 0 chr15 26150364 26150461 -75230060 + GC_rich Low_complexity Low_complexity 1 97 0 28 29 0 0 chr15 26150477 26150512 -75230009 + GC_rich Low_complexity Low_complexity 1 35 0 27 35 0 0 chr15 26150714 26150743 -75229778 + GC_rich Low_complexity Low_complexity 1 29 0 597 259 33 24 chr15 26150771 26150983 -75229538 + MLT1F LTR MaLR 329 542 0 365 247 111 74 chr15 26151035 26151225 -75229296 - L1ME LINE L1 -3283 2846 2650 486 349 72 16 chr15 26151309 26151613 -75228908 - L1ME LINE L1 -3670 2459 2139 1274 202 55 2 chr15 26151613 26152005 -75228516 - LTR53 LTR ERVL -12 507 8 630 254 88 111 chr15 26152465 26152898 -75227623 + LTR16A LTR ERVL 8 430 -20 318 353 31 36 chr15 26152905 26153129 -75227392 - L1ME LINE L1 -5524 595 373 294 293 104 6 chr15 26153259 26153423 -75227098 - L1ME LINE L1 -5926 193 14 377 195 81 0 chr15 26154128 26154215 -75226306 + MLT1F1 LTR MaLR 474 567 0 1709 198 29 3 chr15 26158737 26159086 -75221435 + MLT2D LTR ERVL 1 358 -56 200 146 0 42 chr15 26159155 26159203 -75221318 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 343 102 0 0 chr15 26159233 26159282 -75221239 + MLT2D LTR ERVL 349 397 0 246 255 0 0 chr15 26160095 26160139 -75220382 + CT-rich Low_complexity Low_complexity 1 47 -4 2263 117 3 0 chr15 26160139 26160439 -75220082 - AluSx SINE Alu -11 301 1 687 325 60 39 chr15 26160506 26160974 -75219547 - L2 LINE L2 0 3313 2836 201 94 0 0 chr15 26161459 26161491 -75219030 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 410 330 53 15 chr15 26161520 26161726 -75218795 - L1M4 LINE L1 -2712 3434 3221 245 250 31 0 chr15 26161733 26161797 -75218724 - L1M4 LINE L1 -2562 3584 3519 21 0 0 0 chr15 26161810 26161831 -75218690 + AT_rich Low_complexity Low_complexity 1 21 0 2050 124 0 20 chr15 26161841 26162140 -75218381 + AluSx SINE Alu 1 293 -19 270 0 0 0 chr15 26162270 26162300 -75218221 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1999 105 4 15 chr15 26162300 26162439 -75218082 - AluSc SINE Alu -27 282 146 2330 102 0 7 chr15 26162439 26162743 -75217778 - AluSg1 SINE Alu -7 302 1 1999 105 4 15 chr15 26162743 26162870 -75217651 - AluSc SINE Alu -163 146 19 325 294 98 34 chr15 26162879 26163114 -75217407 - LTR33 LTR ERVL -8 513 264 305 250 0 81 chr15 26163186 26163310 -75217211 - LTR33 LTR ERVL -407 114 1 548 324 32 55 chr15 26163488 26163741 -75216780 + HAL1 LINE L1 1162 1408 -1099 348 313 137 27 chr15 26163716 26163972 -75216549 + L1M4 LINE L1 4412 4695 -1451 * 4352 264 66 39 chr15 26164713 26166274 -75214247 + L1M3c LINE L1 1 1518 -4692 1506 153 4 0 chr15 26166274 26166509 -75214012 + MER46A DNA MER2_type 1 236 0 4352 264 66 39 chr15 26166509 26167418 -75213103 + L1M3c LINE L1 1518 2401 -3809 279 0 0 0 chr15 26167418 26167449 -75213072 + (CA)n Simple_repeat Simple_repeat 2 32 0 4352 264 66 39 chr15 26167449 26168198 -75212323 + L1M3c LINE L1 2401 3128 -3082 2158 130 0 0 chr15 26168198 26168517 -75212004 + AluSx SINE Alu 1 319 0 4352 264 66 39 chr15 26168517 26169046 -75211475 + L1M3c LINE L1 3128 3598 -2612 1534 112 0 0 chr15 26169046 26169243 -75211278 + AluSx SINE Alu 1 197 -115 4352 264 66 39 chr15 26169243 26169489 -75211032 + L1M3c LINE L1 3598 3836 -2374 1279 201 81 24 chr15 26169489 26169835 -75210686 - MSTB2 LTR MaLR -68 379 24 1307 196 159 20 chr15 26169993 26170339 -75210182 + MSTD LTR MaLR 1 394 -2 22 35 0 0 chr15 26170954 26170983 -75209538 + AT_rich Low_complexity Low_complexity 1 29 0 2242 70 0 0 chr15 26172040 26172311 -75208210 - AluSc SINE Alu -9 300 30 199 259 35 17 chr15 26172314 26172372 -75208149 + MER5A DNA MER1_type 128 186 -3 316 68 0 0 chr15 26173032 26173082 -75207439 + MLT2A2 LTR ERVL 1 43 -410 537 82 0 14 chr15 26173199 26173272 -75207249 - AluSq/x SINE Alu -167 145 74 251 175 48 32 chr15 26174088 26174151 -75206370 + C-rich Low_complexity Low_complexity 2 65 0 378 206 7 174 chr15 26174241 26174340 -75206181 + MIR SINE MIR 22 87 -175 186 43 0 0 chr15 26174340 26174363 -75206158 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 378 206 7 174 chr15 26174363 26174418 -75206103 + MIR SINE MIR 87 150 -112 279 0 0 0 chr15 26174811 26174842 -75205679 + (T)n Simple_repeat Simple_repeat 1 31 0 214 197 0 30 chr15 26176440 26176506 -75204015 + G-rich Low_complexity Low_complexity 5 68 0 239 79 26 0 chr15 26177569 26177607 -75202914 + (GA)n Simple_repeat Simple_repeat 2 40 0 238 212 150 53 chr15 26178502 26178615 -75201906 + MIR3 SINE MIR 1 124 -84 464 271 17 0 chr15 26178840 26178958 -75201563 + MIR3 SINE MIR 74 193 -15 300 295 216 48 chr15 26179241 26179468 -75201053 - L3b LINE CR1 -28 1555 1291 424 253 84 45 chr15 26179508 26179662 -75200859 + MIR3 SINE MIR 37 196 -12 559 287 85 49 chr15 26179793 26180040 -75200481 + MIR SINE MIR 3 258 -4 210 37 0 0 chr15 26180164 26180191 -75200330 + (TC)n Simple_repeat Simple_repeat 2 28 0 454 272 44 7 chr15 26180501 26180637 -75199884 + MIR3 SINE MIR 61 201 -7 512 273 15 8 chr15 26180793 26180925 -75199596 + MIR SINE MIR 16 148 -114 520 283 31 13 chr15 26181412 26181571 -75198950 - MIR3 SINE MIR -27 181 20 277 365 10 0 chr15 26181594 26181690 -75198831 + L3b LINE CR1 1290 1386 -197 330 281 144 27 chr15 26181700 26181846 -75198675 - MIR3 SINE MIR -42 166 4 210 313 0 0 chr15 26182292 26182359 -75198162 + L3b LINE CR1 1326 1392 -191 4335 31 2 4 chr15 26182743 26183262 -75197259 + L1PA4 LINE L1 5638 6155 0 223 333 26 0 chr15 26183613 26183691 -75196830 + L3b LINE CR1 1319 1398 -185 1120 151 0 6 chr15 26184325 26184491 -75196030 - AluJb SINE Alu -24 288 124 180 0 0 0 chr15 26184503 26184523 -75195998 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 935 127 0 8 chr15 26184527 26184661 -75195860 - AluJb SINE Alu -179 133 1 803 260 49 29 chr15 26184721 26184967 -75195554 + MIR SINE MIR 2 252 -10 181 311 53 73 chr15 26185053 26185204 -75195317 + MIR3 SINE MIR 1 148 -60 183 149 255 0 chr15 26186119 26186166 -75194355 - MIR SINE MIR -64 144 86 265 307 118 26 chr15 26186472 26186625 -75193896 + MIR SINE MIR 18 184 -78 3029 171 11 4 chr15 26186633 26187181 -75193340 - L1MB7 LINE L1 0 6184 5633 2428 90 3 0 chr15 26187194 26187494 -75193027 - AluSp SINE Alu -12 301 1 685 240 47 42 chr15 26187526 26187718 -75192803 - MIR SINE MIR -34 228 36 199 284 95 0 chr15 26187746 26187820 -75192701 + MIR SINE MIR 176 256 -6 373 274 83 19 chr15 26187986 26188143 -75192378 + MIR3 SINE MIR 42 208 0 453 343 71 10 chr15 26188804 26189020 -75191501 - MIR SINE MIR -20 242 16 613 352 9 13 chr15 26189874 26190104 -75190417 - L3 LINE CR1 -3 1574 1346 277 241 103 43 chr15 26190694 26190810 -75189711 + MIR SINE MIR 20 143 -65 908 175 0 2 chr15 26192054 26192237 -75188284 - AluJo SINE Alu -95 217 3 190 277 92 15 chr15 26192270 26192335 -75188186 + MIR3 SINE MIR 93 162 -46 650 235 56 17 chr15 26192820 26192999 -75187522 - MIR SINE MIR -54 208 23 249 184 224 20 chr15 26193599 26193697 -75186824 + MIR SINE MIR 113 230 -32 235 247 185 0 chr15 26193961 26194042 -75186479 + L2 LINE L2 3139 3234 -38 362 306 125 18 chr15 26194859 26195078 -75185443 - MIR SINE MIR -6 256 6 1603 89 171 4 chr15 26195156 26195413 -75185108 + AluJo SINE Alu 1 300 -2 280 299 65 60 chr15 26197252 26197453 -75183068 + MIR3 SINE MIR 2 203 -5 1759 167 0 3 chr15 26198678 26198978 -75181543 + AluJo SINE Alu 1 299 -13 363 250 85 80 chr15 26200250 26200438 -75180083 + MIR SINE MIR 31 219 -43 379 262 27 86 chr15 26200601 26200788 -75179733 + MER5A DNA MER1_type 7 182 -7 348 243 97 10 chr15 26201228 26201331 -75179190 + MIR3 SINE MIR 11 122 -86 317 43 21 0 chr15 26201854 26201901 -75178620 + (CA)n Simple_repeat Simple_repeat 2 49 0 1555 117 12 4 chr15 26202144 26202391 -75178130 + AluSx SINE Alu 52 300 -12 2322 128 113 18 chr15 26202688 26203079 -75177442 - MSTA LTR MaLR 0 428 1 292 291 196 24 chr15 26203088 26203384 -75177137 - L2 LINE L2 -348 2966 2620 497 135 11 0 chr15 26203754 26203843 -75176678 + (TG)n Simple_repeat Simple_repeat 1 90 0 234 293 73 49 chr15 26204315 26204438 -75176083 - L2 LINE L2 -2141 1173 1048 477 283 280 7 chr15 26204518 26204946 -75175575 - L2 LINE L2 -340 2974 2430 569 320 51 22 chr15 26205287 26205704 -75174817 + L2 LINE L2 2654 3083 -189 372 43 0 0 chr15 26205831 26205877 -75174644 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 342 310 158 19 chr15 26206336 26206559 -75173962 - MIR SINE MIR -6 256 4 3847 164 60 172 chr15 26206676 26206918 -75173603 + L1MB7 LINE L1 3988 4255 -1923 204 40 0 0 chr15 26206918 26206943 -75173578 + (CA)n Simple_repeat Simple_repeat 2 26 0 3847 164 60 172 chr15 26206943 26206966 -75173555 + L1MB7 LINE L1 4255 4279 -1899 2121 131 0 0 chr15 26206966 26207278 -75173243 + AluSx SINE Alu 1 312 0 3847 164 60 172 chr15 26207278 26207672 -75172849 + L1MB7 LINE L1 4279 4716 -1462 1853 148 7 0 chr15 26207672 26207976 -75172545 + AluJb SINE Alu 1 306 -6 3847 164 60 172 chr15 26207976 26208306 -75172215 + L1MB7 LINE L1 4716 5081 -1097 1078 188 5 0 chr15 26208306 26208498 -75172023 + AluJb SINE Alu 96 288 -24 3847 164 60 172 chr15 26208498 26208705 -75171816 + L1MB7 LINE L1 5081 5154 -1024 2119 114 0 10 chr15 26208705 26209011 -75171510 + AluSq SINE Alu 1 303 -10 3847 164 60 172 chr15 26209011 26209323 -75171198 + L1MB7 LINE L1 5154 5499 -679 * 5965 36 0 0 chr15 26209320 26210020 -75170501 - L1PA4 LINE L1 -1441 4705 4006 7601 33 3 1 chr15 26210020 26211472 -75169049 + L1PA4 LINE L1 4702 6155 0 3190 132 61 78 chr15 26211474 26211778 -75168743 + L1MB7 LINE L1 5494 5802 -382 1761 155 7 0 chr15 26211778 26212074 -75168447 + AluJo SINE Alu 1 298 -14 3190 132 61 78 chr15 26212074 26212472 -75168049 + L1MB7 LINE L1 5802 6184 0 188 219 49 0 chr15 26213081 26213122 -75167399 - L2 LINE L2 -6 3307 3265 403 243 29 10 chr15 26213298 26213416 -75167105 + L1ME LINE L1 5714 5823 -304 749 284 60 0 chr15 26214013 26214228 -75166293 + MIR SINE MIR 5 232 -30 330 183 11 53 chr15 26214240 26214333 -75166188 - FRAM SINE Alu -68 98 41 246 189 0 0 chr15 26214359 26214396 -75166125 - Alu SINE Alu -12 121 85 1477 175 3 21 chr15 26215597 26215882 -75164639 + AluJo SINE Alu 10 289 -23 303 251 34 19 chr15 26215928 26216035 -75164486 + MIR3 SINE MIR 59 170 -38 294 29 0 0 chr15 26218044 26218079 -75162442 + (CA)n Simple_repeat Simple_repeat 1 35 0 24 32 0 0 chr15 26220223 26220254 -75160267 + AT_rich Low_complexity Low_complexity 1 31 0 846 97 24 16 chr15 26221143 26221267 -75159254 - AluY SINE Alu -186 125 1 1901 181 109 5 chr15 26221703 26222124 -75158397 + MLT1C LTR MaLR 3 467 0 397 159 0 29 chr15 26223151 26223220 -75157301 + MLT1A1 LTR MaLR 1 67 -298 1014 189 0 0 chr15 26223224 26223393 -75157128 + MLT1A1 LTR MaLR 197 365 0 198 167 0 0 chr15 26223844 26223880 -75156641 + CT-rich Low_complexity Low_complexity 1 36 0 2292 107 0 0 chr15 26223881 26224191 -75156330 - AluSg SINE Alu 0 310 1 257 95 0 71 chr15 26224931 26224973 -75155548 - LTR57 LTR ERVL -75 336 298 620 251 84 15 chr15 26225055 26225258 -75155263 + L2 LINE L2 2949 3165 -148 229 309 32 41 chr15 26225308 26225431 -75155090 - L2 LINE L2 -10 3303 3182 3983 172 23 32 chr15 26225727 26226333 -75154188 + LTR39 LTR ERV1 1 600 -183 2081 128 3 0 chr15 26226333 26226639 -75153882 - AluSx SINE Alu -5 307 1 3983 172 23 32 chr15 26226639 26226822 -75153699 + LTR39 LTR ERV1 600 783 0 397 213 71 8 chr15 26227050 26227178 -75153343 - L1ME3A LINE L1 -241 5925 5791 516 283 126 12 chr15 26227180 26227427 -75153094 - L1ME3A LINE L1 -404 5758 5484 347 308 145 6 chr15 26227465 26227637 -75152884 - L1ME3A LINE L1 -2190 3956 3761 475 250 37 82 chr15 26227637 26228039 -75152482 - L1MC4 LINE L1 -412 7630 7224 892 184 58 34 chr15 26228221 26228428 -75152093 - AluJo SINE Alu -19 293 82 185 148 0 0 chr15 26228460 26228487 -75152034 - MIR SINE MIR -14 248 222 448 198 22 11 chr15 26228489 26228580 -75151941 - AluJo SINE Alu -219 93 2 2028 113 7 0 chr15 26228758 26229049 -75151472 + AluSq SINE Alu 1 293 -20 428 262 35 95 chr15 26229051 26229509 -75151012 + L1MC5 LINE L1 6555 7072 -821 * 729 263 24 12 chr15 26229503 26229784 -75150737 + L1MC4a LINE L1 6968 7214 -636 581 218 144 108 chr15 26229933 26230580 -75149941 + L1MC5 LINE L1 7260 7929 -32 6804 206 67 5 chr15 26230749 26232294 -75148227 + L1 LINE L1 3592 5232 -914 356 296 82 15 chr15 26232844 26232979 -75147542 + L1MB4 LINE L1 3638 3781 -2365 364 288 68 25 chr15 26233047 26233210 -75147311 + MLT1J LTR MaLR 342 511 0 291 299 92 24 chr15 26233210 26233417 -75147104 + L1MB4 LINE L1 3861 4081 -2065 387 215 161 44 chr15 26233671 26233945 -75146576 + L1MB4 LINE L1 4524 4829 -1317 251 260 27 0 chr15 26233989 26234062 -75146459 + MLT1L LTR MaLR 3 77 -538 438 172 0 33 chr15 26234613 26234735 -75145786 + GA-rich Low_complexity Low_complexity 1 118 0 2013 109 10 0 chr15 26235019 26235312 -75145209 + AluSx SINE Alu 1 296 -16 1004 157 79 28 chr15 26235489 26235945 -75144576 + L1MB4 LINE L1 5190 5863 -317 3313 138 0 6 chr15 26235945 26236445 -75144076 + LOR1a LTR ERV1 1 497 0 1122 183 38 8 chr15 26236445 26236685 -75143836 + L1MB4 LINE L1 5922 6168 -12 246 260 53 91 chr15 26236785 26237050 -75143471 + L1ME LINE L1 5485 5739 -382 6537 164 38 4 chr15 26237229 26239482 -75141039 + L1PBa LINE L1 1680 4009 -2853 22 0 0 0 chr15 26239639 26239661 -75140860 + AT_rich Low_complexity Low_complexity 1 22 0 464 261 73 42 chr15 26240623 26240788 -75139733 - L2 LINE L2 0 3313 3144 807 156 32 219 chr15 26241255 26241401 -75139120 + L1MD3 LINE L1 7564 7609 -386 2048 126 0 0 chr15 26241401 26241702 -75138819 + AluSg SINE Alu 1 301 -9 807 156 32 219 chr15 26241702 26241902 -75138619 + L1MD3 LINE L1 7609 7845 -150 366 236 22 0 chr15 26241932 26242021 -75138500 - U8 snRNA snRNA -8 128 38 893 182 40 45 chr15 26243598 26243774 -75136747 - MER20 DNA MER1_type 0 219 45 2512 64 0 3 chr15 26244507 26244819 -75135702 - AluY SINE Alu 0 311 1 367 283 91 43 chr15 26244858 26245045 -75135476 + MIR SINE MIR 36 231 -31 582 240 93 97 chr15 26245508 26245704 -75134817 - MIR SINE MIR -5 257 61 2302 51 3 37 chr15 26245704 26245999 -75134522 + AluY SINE Alu 5 289 -22 582 240 93 97 chr15 26245999 26246060 -75134461 - MIR SINE MIR -201 61 1 186 343 90 0 chr15 26246905 26246972 -75133549 + L2 LINE L2 3208 3280 -33 1025 179 66 0 chr15 26247236 26247448 -75133073 + AluJb SINE Alu 1 226 -86 336 214 0 14 chr15 26248049 26248119 -75132402 - MER8 DNA MER2_type -170 69 1 299 247 137 71 chr15 26248559 26248784 -75131737 - MIR SINE MIR -28 234 3 884 143 0 15 chr15 26249102 26249235 -75131286 + FLAM_C SINE Alu 2 132 -1 23 33 0 0 chr15 26249302 26249332 -75131189 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr15 26249452 26249476 -75131045 + AT_rich Low_complexity Low_complexity 1 24 0 38 22 0 0 chr15 26249536 26249581 -75130940 + AT_rich Low_complexity Low_complexity 1 45 0 2134 97 4 0 chr15 26250210 26250510 -75130011 - AluSq SINE Alu 0 303 3 841 68 25 17 chr15 26250524 26250642 -75129879 - AluY SINE Alu -15 296 178 1273 252 83 50 chr15 26252638 26253218 -75127303 + L1ME1 LINE L1 823 1421 -4988 4215 241 66 22 chr15 26253331 26253647 -75126874 + L1ME1 LINE L1 4180 4481 -1945 234 0 0 0 chr15 26253647 26253673 -75126848 + (CA)n Simple_repeat Simple_repeat 2 27 0 4215 241 66 22 chr15 26253673 26255019 -75125502 + L1ME1 LINE L1 4481 5952 -474 2163 102 13 29 chr15 26255019 26255334 -75125187 + AluSg SINE Alu 1 310 0 4215 241 66 22 chr15 26255334 26255811 -75124710 + L1ME1 LINE L1 5952 6407 -19 351 347 67 22 chr15 26255942 26256169 -75124352 - MIR SINE MIR -14 248 4 380 164 14 14 chr15 26258221 26258294 -75122227 + Tigger5 DNA MER2_type 2251 2323 0 378 195 49 0 chr15 26258344 26258426 -75122095 + Tigger5 DNA MER2_type 2238 2323 0 323 302 30 86 chr15 26259070 26259433 -75121088 + L1 LINE L1 3370 3693 -2453 1879 136 4 0 chr15 26259433 26259706 -75120815 + L1PA15 LINE L1 5892 6165 0 323 302 30 86 chr15 26259706 26259899 -75120622 + L1 LINE L1 3693 3895 -2251 4146 100 35 7 chr15 26259971 26260453 -75120068 + L1P4 LINE L1 4721 5188 -980 2630 45 0 13 chr15 26260453 26260762 -75119759 - AluY SINE Alu -6 305 1 4146 100 35 7 chr15 26260762 26261317 -75119204 + L1P4 LINE L1 5188 5781 -387 3835 230 82 8 chr15 26261327 26262726 -75117795 + L1PBa LINE L1 36 1682 -5181 666 189 8 16 chr15 26262851 26262973 -75117548 - FLAM_C SINE Alu -12 121 1 2138 129 0 13 chr15 26263029 26263339 -75117182 + AluSx SINE Alu 1 306 -6 237 333 0 24 chr15 26263563 26263647 -75116874 + L3b LINE CR1 1272 1353 -230 200 317 24 81 chr15 26263728 26263851 -75116670 - L2 LINE L2 -2 3270 3155 2014 141 3 0 chr15 26263852 26264143 -75116378 + AluSx SINE Alu 1 292 -20 284 104 0 21 chr15 26264685 26264733 -75115788 - MADE1 DNA Mariner 0 80 34 493 286 104 10 chr15 26265390 26265582 -75114939 - L2 LINE L2 0 3313 3104 460 171 13 0 chr15 26265633 26265709 -75114812 - MER33 DNA MER1_type -246 78 2 2200 99 0 3 chr15 26267919 26268233 -75112288 + AluY SINE Alu 1 313 0 1196 174 15 0 chr15 26268488 26268683 -75111838 - AluJo SINE Alu -111 201 4 7022 215 69 12 chr15 26268925 26269835 -75110686 - L1MD1 LINE L1 -336 5906 5049 216 0 0 0 chr15 26269835 26269859 -75110662 + (TTTC)n Simple_repeat Simple_repeat 3 26 0 7022 215 69 12 chr15 26269859 26271515 -75109006 - L1MD1 LINE L1 -1193 5049 3196 2553 211 42 24 chr15 26271505 26272132 -75108389 - L1MC4a LINE L1 -12 7796 7159 * 222 258 0 0 chr15 26272310 26272372 -75108149 + GA-rich Low_complexity Low_complexity 1 62 0 2621 53 0 0 chr15 26273515 26273818 -75106703 + AluY SINE Alu 1 303 -8 673 216 40 0 chr15 26274328 26274476 -75106045 - MER5A DNA MER1_type -35 154 1 22 0 0 0 chr15 26274737 26274759 -75105762 + AT_rich Low_complexity Low_complexity 1 22 0 231 303 91 24 chr15 26275108 26275273 -75105248 + MIR SINE MIR 76 251 -11 1691 164 34 17 chr15 26277570 26277863 -75102658 - L1PB3 LINE L1 -2 6152 5855 2155 138 0 0 chr15 26278566 26278871 -75101650 + AluSx SINE Alu 5 309 -3 373 293 123 98 chr15 26278871 26279212 -75101309 + L1MEd LINE L1 64 422 -5697 2083 137 0 3 chr15 26279212 26279518 -75101003 - AluSg1 SINE Alu -4 305 1 373 293 123 98 chr15 26279518 26279664 -75100857 + L1MEd LINE L1 422 563 -5556 311 275 225 14 chr15 26279676 26279814 -75100707 + L1ME LINE L1 138 304 -5901 2338 212 95 95 chr15 26280450 26281327 -75099194 + L1MD2 LINE L1 5049 5915 -327 2210 128 77 8 chr15 26281327 26281678 -75098843 - THE1C LTR MaLR 0 375 1 2338 212 95 95 chr15 26281678 26281999 -75098522 + L1MD2 LINE L1 5915 6234 -8 1376 259 67 117 chr15 26281997 26282914 -75097607 + L1ME LINE L1 1062 2023 -4373 * 1841 148 16 16 chr15 26282914 26283219 -75097302 - AluSx SINE Alu -3 309 5 1376 259 67 117 chr15 26283219 26283418 -75097103 + L1ME LINE L1 2023 2104 -4292 624 98 87 0 chr15 26283418 26283510 -75097011 + HY3 scRNA scRNA 1 100 -1 1376 259 67 117 chr15 26283510 26283723 -75096798 + L1ME LINE L1 2104 2326 -4070 1851 115 29 48 chr15 26283727 26283863 -75096658 + AluSx SINE Alu 6 143 -169 2161 99 6 10 chr15 26283863 26284175 -75096346 + AluY SINE Alu 1 311 0 1851 115 29 48 chr15 26284175 26284350 -75096171 + AluSx SINE Alu 143 311 -1 1120 117 47 12 chr15 26284355 26284526 -75095995 + AluSg/x SINE Alu 129 305 -7 1678 263 93 21 chr15 26284529 26285290 -75095231 + L1ME LINE L1 2284 3099 -3116 1418 180 11 27 chr15 26285359 26285620 -75094901 + AluSx SINE Alu 3 259 -53 213 263 40 0 chr15 26285798 26285874 -75094647 + MIR SINE MIR 158 236 -26 434 263 249 37 chr15 26286024 26286321 -75094200 + L2 LINE L2 2912 3271 -1 5401 172 7 0 chr15 26286726 26287680 -75092841 + L1P LINE L1 4336 5296 -850 2409 73 0 3 chr15 26288415 26288716 -75091805 - AluY SINE Alu -11 300 1 1262 195 43 14 chr15 26289092 26289630 -75090891 + LTR1B LTR ERV1 233 826 0 180 111 0 0 chr15 26289671 26289698 -75090823 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 261 108 0 0 chr15 26289703 26289740 -75090781 + MLT2B2 LTR ERVL 479 515 0 873 229 10 5 chr15 26289740 26289945 -75090576 + HERVL-B2 LTR ERVL 1 206 -5448 1531 187 63 3 chr15 26290015 26290299 -75090222 + HERVL-B2 LTR ERVL 380 680 -5084 1463 127 17 68 chr15 26290301 26290593 -75089928 - LTR23 LTR ERV1 0 437 161 589 200 82 0 chr15 26290671 26290806 -75089715 - LTR23 LTR ERV1 -291 146 1 1194 167 14 5 chr15 26290831 26291052 -75089469 + HERVL-B2 LTR ERVL 679 901 -4863 1973 254 43 42 chr15 26291190 26291401 -75089120 - L1M4 LINE L1 -2465 3681 3472 2413 79 0 3 chr15 26291401 26291705 -75088816 + AluY SINE Alu 1 303 -8 1973 254 43 42 chr15 26291705 26292299 -75088222 - L1M4 LINE L1 -2674 3472 2875 1813 253 33 33 chr15 26292289 26292895 -75087626 - L1MCb LINE L1 -4882 1163 558 * 448 274 111 66 chr15 26292978 26293204 -75087317 - L1MCb LINE L1 -5481 564 329 378 269 39 70 chr15 26293218 26293374 -75087147 - L1MCb LINE L1 -5789 256 106 * 932 268 48 70 chr15 26293365 26293960 -75086561 - MER21B LTR ERV1 -137 726 142 1552 127 5 0 chr15 26294395 26294608 -75085913 + AluSg/x SINE Alu 68 281 -29 3759 74 6 4 chr15 26294609 26295098 -75085423 + LTR2B LTR ERV1 1 490 0 432 37 0 0 chr15 26295099 26295153 -75085368 + (CATAA)n Simple_repeat Simple_repeat 1 54 0 1627 216 35 0 chr15 26295154 26295496 -75085025 - ERVL LTR ERVL -4360 1404 1051 569 86 250 23 chr15 26295516 26295644 -75084877 - MER4C LTR ERV1 -18 447 291 245 32 0 210 chr15 26295703 26295765 -75084756 - MER4A LTR ERV1 -310 354 306 1405 153 63 39 chr15 26295773 26296107 -75084414 - MER4A LTR ERV1 -322 342 1 487 181 211 0 chr15 26296107 26296240 -75084281 - ERVL LTR ERVL -4711 1053 893 888 55 55 0 chr15 26296243 26296371 -75084150 + MER30 DNA MER1_type 4 138 -92 2254 81 7 0 chr15 26296371 26296655 -75083866 - AluY SINE Alu -17 294 9 979 158 0 19 chr15 26298470 26298651 -75081870 - FRAM SINE Alu 0 176 1 192 120 20 60 chr15 26298660 26298710 -75081811 - MIR SINE MIR -108 154 107 1347 137 5 0 chr15 26298757 26298962 -75081559 + L1MC1 LINE L1 6122 6327 -6 186 43 0 0 chr15 26299431 26299454 -75081067 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1777 151 4 0 chr15 26299459 26299737 -75080784 - AluSx SINE Alu -33 279 1 240 221 122 28 chr15 26299792 26299924 -75080597 - MIR SINE MIR -59 203 53 567 255 82 10 chr15 26301088 26301296 -75079225 - L1ME3 LINE L1 -201 5961 5739 254 238 62 0 chr15 26301304 26301384 -75079137 - L1ME3 LINE L1 -536 5634 5550 2550 68 0 0 chr15 26301533 26301843 -75078678 + AluY SINE Alu 1 310 -1 307 228 43 0 chr15 26302158 26302250 -75078271 + L1M4 LINE L1 3863 3958 -2188 579 196 43 0 chr15 26302257 26302395 -75078126 + L1MC1 LINE L1 6128 6271 -62 500 149 33 66 chr15 26302395 26302502 -75078019 + L1MC1 LINE L1 6206 6322 -11 2051 124 0 7 chr15 26302508 26302821 -75077700 + AluSc SINE Alu 1 311 0 2296 78 0 13 chr15 26302847 26303154 -75077367 + AluY SINE Alu 1 303 -8 2410 55 0 19 chr15 26304087 26304397 -75076124 + AluY SINE Alu 1 304 -7 2371 67 3 3 chr15 26305035 26305332 -75075189 - AluY SINE Alu -14 297 1 1622 172 62 14 chr15 26305997 26306287 -75074234 - AluJo SINE Alu -7 305 2 330 298 143 53 chr15 26306303 26306568 -75073953 - L1M4 LINE L1 -1984 4162 3874 1720 156 4 7 chr15 26307080 26307349 -75073172 - AluJo SINE Alu -43 269 2 21 0 0 0 chr15 26307358 26307379 -75073142 + AT_rich Low_complexity Low_complexity 1 21 0 1815 180 3 7 chr15 26307797 26308103 -75072418 - AluJo SINE Alu -7 305 1 2161 119 10 0 chr15 26308160 26308454 -75072067 + AluSx SINE Alu 5 301 -11 574 296 66 22 chr15 26310565 26310647 -75069874 - L1MEd LINE L1 -840 1650 1573 2617 121 45 17 chr15 26310647 26311069 -75069452 - MER57B LTR ERV1 0 434 1 574 296 66 22 chr15 26311069 26311607 -75068914 - L1MEd LINE L1 -917 1573 913 22 0 0 0 chr15 26311616 26311638 -75068883 + AT_rich Low_complexity Low_complexity 1 22 0 2271 65 45 3 chr15 26311697 26311988 -75068533 - AluY SINE Alu -8 303 1 3185 232 112 30 chr15 26312150 26313763 -75066758 + L1MDb LINE L1 6 1740 -4666 256 105 175 0 chr15 26313857 26313914 -75066607 + MLT2B2 LTR ERVL 49 115 -405 1696 213 28 14 chr15 26313981 26314338 -75066183 + MLT2B2 LTR ERVL 100 461 -54 631 99 10 0 chr15 26314393 26314494 -75066027 + LTR1B LTR ERV1 1 102 -724 2048 100 0 31 chr15 26314600 26314890 -75065631 + AluY SINE Alu 18 298 -13 775 221 110 28 chr15 26315920 26316237 -75064284 - LTR37A LTR ERV1 0 426 84 185 81 0 54 chr15 26316576 26316613 -75063908 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 2216 86 0 0 chr15 26317884 26318204 -75062317 + AluSg SINE Alu 2 321 0 663 246 40 6 chr15 26318435 26318610 -75061911 - MIR SINE MIR -31 231 51 2359 54 0 0 chr15 26318744 26319023 -75061498 + AluY SINE Alu 1 279 -32 233 29 29 0 chr15 26319023 26319057 -75061464 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 2062 138 0 0 chr15 26319818 26320116 -75060405 + AluSx SINE Alu 3 300 -12 253 216 0 20 chr15 26320116 26320167 -75060354 + L2 LINE L2 3264 3313 0 29 47 0 0 chr15 26320206 26320249 -75060272 + AT_rich Low_complexity Low_complexity 1 43 0 245 173 77 0 chr15 26320649 26320701 -75059820 - L1ME4a LINE L1 -72 6049 5994 454 294 18 12 chr15 26320711 26320874 -75059647 + (CATATA)n Simple_repeat Simple_repeat 3 166 0 2204 109 3 10 chr15 26320934 26321245 -75059276 + AluSx SINE Alu 1 309 -3 425 199 352 0 chr15 26321245 26321461 -75059060 - L1ME4a LINE L1 -303 5818 5527 827 277 139 16 chr15 26321802 26322737 -75057784 + L1ME LINE L1 4487 5543 -745 2364 96 0 3 chr15 26322742 26323044 -75057477 - AluSx SINE Alu -11 301 1 384 272 217 11 chr15 26323178 26323358 -75057163 + L1ME LINE L1 5602 5818 -303 583 103 0 0 chr15 26323415 26323502 -75057019 + L1MA3 LINE L1 6219 6305 0 24 0 0 0 chr15 26323543 26323567 -75056954 + AT_rich Low_complexity Low_complexity 1 24 0 2169 85 0 85 chr15 26323623 26323952 -75056569 - AluSx SINE Alu -11 301 1 1487 182 26 77 chr15 26324569 26324960 -75055561 + MLT1A2 LTR MaLR 4 374 0 2351 94 0 0 chr15 26325316 26325613 -75054908 + AluSg1 SINE Alu 1 297 -12 696 110 9 0 chr15 26325755 26325864 -75054657 + MLT1B LTR MaLR 63 172 -218 2290 90 0 7 chr15 26325869 26326169 -75054352 + AluY SINE Alu 1 298 -13 238 208 130 0 chr15 26326191 26326268 -75054253 + L1 LINE L1 4750 4836 -1310 592 293 27 40 chr15 26326745 26327073 -75053448 - L1MC4 LINE L1 0 8042 7719 667 218 77 0 chr15 26327289 26327459 -75053062 - MER5A DNA MER1_type -2 187 5 1815 112 8 4 chr15 26327639 26327889 -75052632 + AluSx SINE Alu 1 251 -61 461 31 0 16 chr15 26327904 26327968 -75052553 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 611 223 97 24 chr15 26328276 26328482 -75052039 + MLT1J LTR MaLR 291 511 0 236 246 80 7 chr15 26329227 26329365 -75051156 - L1P5 LINE L1 -711 5443 5296 1531 137 17 0 chr15 26329418 26329834 -75050687 + AluSp SINE Alu 76 495 0 259 346 185 0 chr15 26330191 26330321 -75050200 + MIR3 SINE MIR 53 206 -2 182 378 92 0 chr15 26330657 26330776 -75049745 + MER5B DNA MER1_type 17 146 -32 450 342 0 12 chr15 26330979 26331315 -75049206 + GA-rich Low_complexity Low_complexity 1 331 0 1275 153 54 5 chr15 26331443 26331690 -75048831 + L1PB4 LINE L1 5905 6151 0 2247 75 0 0 chr15 26331694 26332010 -75048511 + AluY SINE Alu 1 316 0 559 307 103 16 chr15 26332354 26332732 -75047789 - L1ME4a LINE L1 -2 6119 5709 284 330 79 41 chr15 26332738 26333236 -75047285 + L2 LINE L2 2766 3289 -24 189 243 108 40 chr15 26333774 26333848 -75046673 + MIR SINE MIR 184 262 0 1928 144 25 25 chr15 26333928 26334288 -75046233 + MLT1A1 LTR MaLR 6 365 0 3220 171 84 0 chr15 26334350 26335017 -75045504 + L1MB7 LINE L1 5404 6126 -58 348 161 0 0 chr15 26335018 26335080 -75045441 + (CATATA)n Simple_repeat Simple_repeat 3 64 0 361 189 0 63 chr15 26335081 26335176 -75045345 - L1MC4 LINE L1 -1339 6703 6615 2339 98 0 19 chr15 26335228 26335545 -75044976 + AluSp SINE Alu 1 311 -2 2200 112 13 13 chr15 26336036 26336340 -75044181 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr15 26336431 26336459 -75044062 + AT_rich Low_complexity Low_complexity 1 28 0 679 200 8 8 chr15 26336471 26336596 -75043925 + FLAM_C SINE Alu 3 127 -16 24 0 0 0 chr15 26336688 26336712 -75043809 + AT_rich Low_complexity Low_complexity 1 24 0 326 236 27 45 chr15 26337038 26337148 -75043373 + L1ME4a LINE L1 5743 5850 -271 2307 88 3 0 chr15 26337156 26337452 -75043069 + AluSp SINE Alu 1 297 -16 2228 103 0 0 chr15 26337625 26337926 -75042595 + AluY SINE Alu 1 301 -10 21 0 0 0 chr15 26338158 26338179 -75042342 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr15 26338481 26338520 -75042001 + AT_rich Low_complexity Low_complexity 1 39 0 506 279 139 103 chr15 26339504 26340545 -75039976 + L1M2 LINE L1 509 1405 -5444 447 90 0 15 chr15 26341406 26341473 -75039048 - Alu SINE Alu -244 66 1 408 194 21 0 chr15 26342071 26342164 -75038357 - MER103 DNA DNA -21 145 51 312 275 18 37 chr15 26342210 26342319 -75038202 + MER5C DNA MER1_type 18 124 -200 1370 130 189 53 chr15 26342781 26343025 -75037496 + MER47A DNA MER2_type 1 210 -2113 207 0 0 0 chr15 26343025 26343048 -75037473 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2105 111 3 7 chr15 26343052 26343340 -75037181 - AluSp SINE Alu -26 287 1 1370 130 189 53 chr15 26343340 26343412 -75037109 + MER47A DNA MER2_type 212 366 0 2234 73 38 0 chr15 26344212 26344501 -75036020 - AluY SINE Alu -7 304 5 369 109 0 0 chr15 26344505 26344560 -75035961 + (T)n Simple_repeat Simple_repeat 1 55 0 21 89 0 0 chr15 26345086 26345142 -75035379 + AT_rich Low_complexity Low_complexity 1 56 0 28 0 0 0 chr15 26345419 26345447 -75035074 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr15 26345704 26345749 -75034772 + AT_rich Low_complexity Low_complexity 1 45 0 198 232 143 0 chr15 26346876 26346932 -75033589 + MIR SINE MIR 106 169 -93 1307 160 12 78 chr15 26347188 26347402 -75033119 - AluJo SINE Alu -2 310 124 1746 114 28 41 chr15 26347402 26347692 -75032829 + AluSp SINE Alu 2 287 -26 1307 160 12 78 chr15 26347692 26347809 -75032712 - AluJo SINE Alu -188 124 1 1649 135 14 17 chr15 26347843 26348140 -75032381 + AluSp SINE Alu 5 300 -13 563 196 9 0 chr15 26348140 26348252 -75032269 - AluJb SINE Alu -198 114 2 1587 139 23 16 chr15 26348287 26348590 -75031931 + AluSp SINE Alu 5 309 -4 288 136 0 0 chr15 26348590 26348634 -75031887 - AluJb SINE Alu -188 114 71 * 1512 226 91 39 chr15 26348625 26349064 -75031457 + MLT1D LTR MaLR 44 505 0 1758 194 28 33 chr15 26349603 26349999 -75030522 - L1MB2 LINE L1 0 6171 5778 381 43 0 0 chr15 26349999 26350046 -75030475 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 836 168 14 0 chr15 26350046 26350189 -75030332 - AluJb SINE Alu -30 282 138 1627 156 19 16 chr15 26350672 26350980 -75029541 - L1MB7 LINE L1 0 6184 5876 26 30 0 0 chr15 26354011 26354044 -75026477 + AT_rich Low_complexity Low_complexity 1 33 0 580 204 138 13 chr15 26354087 26354239 -75026282 - MIR SINE MIR -64 198 28 1916 109 13 33 chr15 26354392 26354695 -75025826 - AluSx SINE Alu -13 299 3 327 49 0 0 chr15 26355859 26355900 -75024621 + (TG)n Simple_repeat Simple_repeat 2 42 0 275 204 0 0 chr15 26355912 26355961 -75024560 + MIR SINE MIR 184 232 -30 921 249 127 33 chr15 26355991 26356505 -75024016 - HAL1 LINE L1 -877 1630 1069 606 236 126 95 chr15 26356506 26356981 -75023540 - MLT1H1 LTR MaLR 0 555 66 582 229 151 28 chr15 26357048 26357266 -75023255 - HAL1 LINE L1 -1437 1070 826 2134 112 3 3 chr15 26357272 26357575 -75022946 - AluSp SINE Alu -10 303 1 1756 138 10 31 chr15 26357639 26357967 -75022554 + AluJo SINE Alu 1 322 0 235 290 93 65 chr15 26358241 26358531 -75021990 - HAL1 LINE L1 -2167 340 43 901 217 37 28 chr15 26358914 26359131 -75021390 + MER20 DNA MER1_type 1 219 0 2278 63 0 20 chr15 26359261 26359562 -75020959 + AluY SINE Alu 5 299 -12 465 274 195 39 chr15 26359663 26359970 -75020551 - L1M4 LINE L1 -2884 3262 2908 270 0 0 0 chr15 26360000 26360030 -75020491 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2004 118 7 0 chr15 26360030 26360309 -75020212 - AluY SINE Alu -27 284 1 396 251 99 41 chr15 26362967 26362990 -75017531 + MIR SINE MIR 12 32 -230 2106 99 7 3 chr15 26362990 26363283 -75017238 + AluY SINE Alu 1 294 -17 396 251 99 41 chr15 26363283 26363430 -75017091 + MIR SINE MIR 32 192 -70 277 343 131 0 chr15 26364360 26364497 -75016024 + MIR3 SINE MIR 31 185 -23 333 241 78 26 chr15 26364516 26364632 -75015889 + L2 LINE L2 3146 3267 -5 230 173 58 0 chr15 26365968 26366020 -75014501 + L1MC4a LINE L1 5885 5939 -1869 282 56 0 0 chr15 26366023 26366059 -75014462 + (TG)n Simple_repeat Simple_repeat 2 37 0 507 255 160 25 chr15 26366255 26366455 -75014066 + MIR SINE MIR 26 252 -10 185 250 231 0 chr15 26367046 26367098 -75013423 + MIR SINE MIR 88 151 -111 1806 145 0 26 chr15 26368537 26368840 -75011681 + AluSx SINE Alu 3 297 -15 267 287 189 0 chr15 26368857 26368979 -75011542 + MIR SINE MIR 48 192 -70 862 175 0 18 chr15 26369686 26369852 -75010669 + 7SLRNA srpRNA srpRNA 95 257 -63 261 57 0 0 chr15 26370977 26371012 -75009509 + (TGGGGG)n Simple_repeat Simple_repeat 6 40 0 782 104 9 0 chr15 26373449 26373555 -75006966 - AluSq/x SINE Alu -205 107 1 592 143 0 17 chr15 26373851 26373970 -75006551 + (TTCC)n Simple_repeat Simple_repeat 1 117 0 2101 118 0 7 chr15 26373971 26374277 -75006244 - AluSx SINE Alu -8 304 1 355 295 47 118 chr15 26374298 26374432 -75006089 - HAL1 LINE L1 -1210 1297 1155 2747 139 98 7 chr15 26374432 26374973 -75005548 - L1MB7 LINE L1 -16 6168 5579 1233 135 14 19 chr15 26374974 26375189 -75005332 - L1PA13 LINE L1 0 6163 5950 355 295 47 118 chr15 26375189 26375432 -75005089 - HAL1 LINE L1 -1351 1156 945 300 325 67 33 chr15 26375576 26375606 -75004915 - HAL1 LINE L1 -1586 921 893 2540 7 0 0 chr15 26375606 26375887 -75004634 - AluYa5 SINE Alu -9 302 22 300 325 67 33 chr15 26375887 26375976 -75004545 - HAL1 LINE L1 -1614 893 798 229 282 0 0 chr15 26376786 26376857 -75003664 + T-rich Low_complexity Low_complexity 1 71 0 837 154 6 82 chr15 26376908 26377090 -75003431 - AluJo SINE Alu -144 168 1 2252 94 0 3 chr15 26377133 26377440 -75003081 - AluSx SINE Alu -4 308 3 354 300 87 33 chr15 26378254 26378404 -75002117 - L2 LINE L2 0 3313 3156 331 321 89 30 chr15 26378479 26378647 -75001874 - MIR SINE MIR 0 262 85 430 270 57 0 chr15 26378680 26378696 -75001825 - MER3 DNA MER1_type 6 168 154 1664 170 49 0 chr15 26378696 26378984 -75001537 + AluJb SINE Alu 1 302 -10 430 270 57 0 chr15 26378984 26379126 -75001395 - MER3 DNA MER1_type -8 154 1 1161 159 15 0 chr15 26379530 26379725 -75000796 + AluJo SINE Alu 4 201 -111 305 326 126 23 chr15 26382000 26382175 -74998346 + L1MEd LINE L1 908 1100 -5019 450 189 14 0 chr15 26382189 26382263 -74998258 + MER33 DNA MER1_type 4 78 -246 539 285 104 10 chr15 26382312 26382505 -74998016 + L2 LINE L2 3103 3313 0 235 149 0 21 chr15 26383150 26383197 -74997324 + MADE1 DNA Mariner 34 79 -1 238 288 16 114 chr15 26383691 26383705 -74996816 + L2 LINE L2 2896 2910 -362 1860 130 0 18 chr15 26383705 26384025 -74996496 - AluSx SINE Alu 0 320 6 238 288 16 114 chr15 26384025 26384193 -74996328 + L2 LINE L2 2910 3061 -211 1233 179 0 17 chr15 26384565 26384799 -74995722 + AluSg/x SINE Alu 83 312 0 273 149 23 11 chr15 26385197 26385284 -74995237 + (TG)n Simple_repeat Simple_repeat 1 88 0 2328 74 0 3 chr15 26385653 26385964 -74994557 + AluY SINE Alu 1 310 -1 2460 52 0 13 chr15 26386396 26386703 -74993818 + AluY SINE Alu 1 303 -8 528 267 172 49 chr15 26386742 26387104 -74993417 - L1 LINE L1 -2834 3312 2922 1943 122 10 0 chr15 26387139 26387460 -74993061 - AluY SINE Alu 0 311 1 386 257 99 41 chr15 26390123 26390146 -74990375 + MIR SINE MIR 12 32 -230 2227 94 7 0 chr15 26390146 26390444 -74990077 + AluY SINE Alu 1 300 -11 386 257 99 41 chr15 26390444 26390591 -74989930 + MIR SINE MIR 32 192 -70 286 336 131 0 chr15 26391522 26391659 -74988862 + MIR3 SINE MIR 31 185 -23 339 278 70 17 chr15 26391679 26391794 -74988727 + L2 LINE L2 3188 3308 -5 230 149 40 81 chr15 26393138 26393191 -74987330 + L1MC4a LINE L1 5885 5936 -1872 384 22 0 0 chr15 26393191 26393236 -74987285 + (TG)n Simple_repeat Simple_repeat 1 45 0 230 149 40 81 chr15 26393236 26393256 -74987265 + L1MC4a LINE L1 5936 5955 -1853 507 255 160 25 chr15 26393432 26393632 -74986889 + MIR SINE MIR 26 252 -10 184 250 231 0 chr15 26394223 26394275 -74986246 + MIR SINE MIR 88 151 -111 1815 140 0 39 chr15 26395710 26396018 -74984503 + AluSx SINE Alu 2 297 -15 267 287 189 0 chr15 26396035 26396157 -74984364 + MIR SINE MIR 48 192 -70 911 163 0 18 chr15 26396842 26397008 -74983513 + 7SLRNA srpRNA srpRNA 95 257 -63 207 69 0 0 chr15 26398130 26398159 -74982362 + (TGGGGG)n Simple_repeat Simple_repeat 6 34 0 22 35 0 0 chr15 26401495 26401524 -74978997 + AT_rich Low_complexity Low_complexity 1 29 0 258 54 54 0 chr15 26402193 26402230 -74978291 - MER5A DNA MER1_type -77 112 74 2187 60 3 13 chr15 26402234 26402533 -74977988 - AluY SINE Alu -15 296 1 302 196 0 0 chr15 26402548 26402594 -74977927 + Tigger3(Golem) DNA MER2_type 4 49 -2980 847 124 0 0 chr15 26402598 26402719 -74977802 - Tigger3(Golem) DNA MER2_type -746 2283 2163 396 198 10 79 chr15 26402716 26402817 -74977704 - Tigger3(Golem) DNA MER2_type -2869 160 67 * 2212 80 3 13 chr15 26402817 26403130 -74977391 - AluY SINE Alu -1 310 1 231 37 0 0 chr15 26403131 26403158 -74977363 - Tigger3(Golem) DNA MER2_type -2947 82 56 * 3950 126 68 26 chr15 26403156 26403219 -74977302 + Tigger3(Golem) DNA MER2_type 2276 2335 -693 1794 168 0 3 chr15 26403219 26403522 -74976999 - AluJb SINE Alu -10 302 1 3950 126 68 26 chr15 26403522 26403910 -74976611 + Tigger3(Golem) DNA MER2_type 2335 2771 -257 2252 101 3 0 chr15 26403910 26404217 -74976304 + AluSc SINE Alu 1 308 -1 3950 126 68 26 chr15 26404217 26404486 -74976035 + Tigger3(Golem) DNA MER2_type 2771 3027 -1 862 297 93 13 chr15 26404575 26404972 -74975549 - LTR16A LTR ERVL -6 444 16 2314 43 4 0 chr15 26405098 26405398 -74975123 + AluY SINE Alu 1 301 0 1887 113 0 0 chr15 26405854 26406111 -74974410 + AluSx SINE Alu 1 257 -55 363 197 197 16 chr15 26406568 26406695 -74973826 - L1MC4a LINE L1 -1883 5925 5776 * 1406 253 63 15 chr15 26406692 26406749 -74973772 + L1MC/D LINE L1 5377 5430 -2378 2041 122 0 0 chr15 26406749 26407045 -74973476 + AluSx SINE Alu 1 296 -16 1406 253 63 15 chr15 26407045 26407383 -74973138 + L1MC/D LINE L1 5430 5791 -2017 24 53 0 0 chr15 26407614 26407652 -74972869 + AT_rich Low_complexity Low_complexity 1 38 0 2246 94 0 0 chr15 26407735 26408042 -74972479 + AluSg1 SINE Alu 1 307 -2 202 263 288 12 chr15 26408548 26408628 -74971893 + L2 LINE L2 3162 3263 -9 295 283 123 47 chr15 26408763 26408869 -74971652 - L2 LINE L2 0 3313 3200 1730 133 24 7 chr15 26410047 26410341 -74970180 + AluJb SINE Alu 7 305 -7 922 268 106 19 chr15 26410737 26411152 -74969369 - L2 LINE L2 -1122 2192 1742 684 231 0 8 chr15 26411781 26411915 -74968606 + FLAM_A SINE Alu 1 133 0 204 311 171 12 chr15 26413792 26413956 -74966565 - L2 LINE L2 -527 2787 2598 1926 145 0 0 chr15 26414057 26414347 -74966174 - AluSx SINE Alu -11 301 12 352 266 22 144 chr15 26414377 26414513 -74966008 - HAL1 LINE L1 -1208 1299 1148 2763 137 98 7 chr15 26414513 26415054 -74965467 - L1MB7 LINE L1 -16 6168 5579 1233 135 14 19 chr15 26415055 26415270 -74965251 - L1PA13 LINE L1 0 6163 5950 352 266 22 144 chr15 26415270 26415450 -74965071 - HAL1 LINE L1 -1358 1149 1020 209 57 29 0 chr15 26416618 26416653 -74963868 + (TTA)n Simple_repeat Simple_repeat 1 36 0 812 169 6 62 chr15 26416702 26416880 -74963641 - AluJb SINE Alu -144 168 1 1949 114 4 4 chr15 26416925 26417226 -74963295 - AluSx SINE Alu 0 303 3 1816 164 0 3 chr15 26417486 26417790 -74962731 - AluSx SINE Alu -9 303 1 22 88 0 0 chr15 26418509 26418566 -74961955 + AT_rich Low_complexity Low_complexity 1 57 0 378 0 0 0 chr15 26419641 26419683 -74960838 + (TG)n Simple_repeat Simple_repeat 2 43 0 188 283 38 0 chr15 26419979 26420032 -74960489 - L3 LINE CR1 -390 1187 1133 204 284 208 30 chr15 26420118 26420354 -74960167 - L3 LINE CR1 -588 989 712 25 0 0 0 chr15 26420784 26420809 -74959712 + AT_rich Low_complexity Low_complexity 1 25 0 2078 120 0 13 chr15 26421008 26421309 -74959212 - AluSq SINE Alu -16 297 1 2014 133 3 0 chr15 26421384 26421685 -74958836 - AluSx SINE Alu -10 302 1 2442 120 0 5 chr15 26421857 26422225 -74958296 + L1PB1 LINE L1 5783 6148 -3 2720 84 28 5 chr15 26422231 26422622 -74957899 + L1PA10 LINE L1 5768 6167 -1 204 40 0 0 chr15 26422624 26422649 -74957872 + (TG)n Simple_repeat Simple_repeat 2 26 0 384 328 38 29 chr15 26422657 26422971 -74957550 + L1 LINE L1 4015 4331 -1815 3216 230 80 45 chr15 26423101 26424421 -74956100 + L1MC5 LINE L1 6551 7927 -34 310 322 138 20 chr15 26425851 26426003 -74954518 - MIR SINE MIR -71 191 22 848 236 14 10 chr15 26426256 26426464 -74954057 - MER96B DNA MER1_type? -208 209 1 266 0 0 29 chr15 26426787 26426822 -74953699 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1729 120 3 57 chr15 26426835 26427134 -74953387 - AluSq SINE Alu -30 283 1 588 256 172 0 chr15 26427625 26427828 -74952693 - MIR SINE MIR -4 258 21 2151 85 10 23 chr15 26428215 26428522 -74951999 + AluY SINE Alu 1 303 -8 979 248 18 5 chr15 26429311 26429529 -74950992 - MER58A DNA MER1_type -2 222 2 449 292 0 52 chr15 26430080 26430367 -74950154 + GA-rich Low_complexity Low_complexity 1 272 0 30 27 0 0 chr15 26431107 26431144 -74949377 + AT_rich Low_complexity Low_complexity 1 37 0 1876 97 104 0 chr15 26431155 26431424 -74949097 + AluSx SINE Alu 1 297 -15 1890 136 3 7 chr15 26432055 26432357 -74948164 - AluSx SINE Alu -11 301 1 460 167 52 0 chr15 26432379 26432475 -74948046 - L1ME2 LINE L1 -4 6160 6060 228 88 29 0 chr15 26432481 26432515 -74948006 - MER3 DNA MER1_type -160 49 15 364 304 59 59 chr15 26433707 26433911 -74946610 + MLT1L LTR MaLR 5 208 -407 304 343 22 7 chr15 26434761 26434898 -74945623 - L2 LINE L2 -926 2388 2250 407 233 52 9 chr15 26436113 26436229 -74944292 - MIR3 SINE MIR -36 172 52 352 286 164 0 chr15 26437093 26437233 -74943288 - MER5A DNA MER1_type -26 163 1 290 261 112 8 chr15 26437266 26437400 -74943121 - MIR SINE MIR -94 168 21 2040 130 0 0 chr15 26438921 26439222 -74941299 + AluSx SINE Alu 1 301 -11 1918 123 0 19 chr15 26439445 26439753 -74940768 + AluY SINE Alu 1 302 -9 509 316 66 13 chr15 26440116 26440344 -74940177 + MIR SINE MIR 13 252 -10 245 317 0 49 chr15 26440345 26440487 -74940034 + L1 LINE L1 3702 3836 -2310 709 219 26 0 chr15 26440514 26440669 -74939852 - AluJb SINE Alu -17 295 137 308 294 17 26 chr15 26440685 26440808 -74939713 + L1 LINE L1 4020 4141 -2005 1707 164 0 26 chr15 26440920 26441245 -74939276 + AluSx SINE Alu 1 312 0 2061 199 91 117 chr15 26441521 26442098 -74938423 - L1MC4a LINE L1 -946 6862 6312 1441 72 111 5 chr15 26442098 26442306 -74938215 + MER30 DNA MER1_type 1 230 0 2061 199 91 117 chr15 26442306 26442568 -74937953 - L1MC4a LINE L1 -1496 6312 6045 527 268 89 89 chr15 26442613 26442721 -74937800 - MIR SINE MIR -14 248 141 1647 117 0 0 chr15 26442721 26442952 -74937569 - AluSx SINE Alu -24 288 58 527 268 89 89 chr15 26442952 26443067 -74937454 - MIR SINE MIR -120 142 25 184 352 57 9 chr15 26443440 26443545 -74936976 - L2 LINE L2 -5 3308 3199 1832 122 7 0 chr15 26443825 26444096 -74936425 + AluSq SINE Alu 35 307 -6 256 250 31 0 chr15 26444250 26444314 -74936207 - MLT1K LTR MaLR -39 549 484 180 111 0 0 chr15 26445609 26445636 -74934885 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 375 23 0 0 chr15 26445729 26445773 -74934748 + (TG)n Simple_repeat Simple_repeat 2 45 0 448 291 37 0 chr15 26445930 26446098 -74934423 - L2 LINE L2 -1056 2258 2082 243 256 58 0 chr15 26446104 26446190 -74934331 - L2 LINE L2 -1036 2278 2188 1002 275 90 14 chr15 26446203 26446570 -74933951 - MLT1I LTR MaLR -14 395 1 654 274 74 55 chr15 26447992 26448573 -74931948 + L1MC4 LINE L1 5268 5647 -517 242 318 93 0 chr15 26450180 26450287 -74930234 - L2 LINE L2 -11 3261 3145 3374 122 48 59 chr15 26450975 26451446 -74929075 - MER7C DNA MER2_type -2426 602 138 2289 55 21 0 chr15 26451446 26451735 -74928786 + AluY SINE Alu 3 297 -14 3374 122 48 59 chr15 26451735 26451872 -74928649 - MER7C DNA MER2_type -2890 138 1 1057 279 74 51 chr15 26452220 26452830 -74927691 - L2 LINE L2 -381 2933 2310 857 184 48 0 chr15 26452904 26453051 -74927470 + FRAM SINE Alu 9 162 -14 1964 237 69 57 chr15 26453590 26454190 -74926331 + L1MC4 LINE L1 6895 7523 -285 5977 46 0 11 chr15 26454190 26454911 -74925610 + L1PA7 LINE L1 5441 6153 -1 1964 237 69 57 chr15 26454911 26455200 -74925321 + L1MC4 LINE L1 7523 7807 -1 186 143 79 16 chr15 26455837 26455963 -74924558 + (TA)n Simple_repeat Simple_repeat 1 134 0 35 24 0 0 chr15 26455970 26456012 -74924509 + AT_rich Low_complexity Low_complexity 1 42 0 29 47 0 0 chr15 26456069 26456112 -74924409 + AT_rich Low_complexity Low_complexity 1 43 0 202 298 96 11 chr15 26456639 26456817 -74923704 - L2 LINE L2 -195 3077 2885 289 250 61 76 chr15 26456909 26456986 -74923535 - L2 LINE L2 -528 2786 2710 2125 110 17 0 chr15 26456986 26457285 -74923236 - AluSx SINE Alu -8 304 1 289 250 61 76 chr15 26457285 26457339 -74923182 - L2 LINE L2 -604 2710 2657 1232 269 89 49 chr15 26457538 26458495 -74922026 - L1ME3 LINE L1 0 6166 5116 1961 166 0 0 chr15 26458495 26458797 -74921724 - AluSx SINE Alu -9 303 2 1232 269 89 49 chr15 26458797 26459070 -74921451 - L1ME3 LINE L1 -1050 5116 4855 631 271 33 11 chr15 26460477 26460658 -74919863 + L1 LINE L1 2510 2694 -3452 303 277 76 0 chr15 26461018 26461137 -74919384 - L1ME4a LINE L1 -3 6118 5991 225 146 0 0 chr15 26461425 26461466 -74919055 - LTR66 LTR ERVL -171 439 399 365 285 106 31 chr15 26462814 26463070 -74917451 - L1ME4a LINE L1 -2082 5726 5452 407 302 38 19 chr15 26464896 26465055 -74915466 + MIR3 SINE MIR 32 193 -15 256 373 35 35 chr15 26465063 26465264 -74915257 + L3 LINE CR1 457 657 -920 627 227 129 12 chr15 26465273 26465436 -74915085 - MER58A DNA MER1_type -1 223 42 204 226 19 0 chr15 26466120 26466173 -74914348 - MIR SINE MIR -76 186 133 273 250 26 0 chr15 26466232 26466308 -74914213 - MER5A DNA MER1_type -83 106 29 658 143 34 0 chr15 26466973 26467092 -74913429 - L1MD1 LINE L1 -2 6240 6118 5103 144 36 4 chr15 26467696 26469266 -74911255 - L1MA4 LINE L1 -190 6110 4487 2596 196 15 65 chr15 26469258 26469935 -74910586 - L1ME4a LINE L1 -846 5300 4658 * 21 71 0 0 chr15 26470292 26470334 -74910187 + AT_rich Low_complexity Low_complexity 1 42 0 47 44 0 0 chr15 26470725 26470793 -74909728 + AT_rich Low_complexity Low_complexity 1 68 0 779 286 102 52 chr15 26471469 26472121 -74908400 - L1MC4 LINE L1 0 8042 7245 2388 84 0 7 chr15 26472121 26472420 -74908101 - AluSc SINE Alu -12 297 1 779 286 102 52 chr15 26472420 26472544 -74907977 - L1MC4 LINE L1 -797 7245 7129 189 310 16 93 chr15 26472664 26472793 -74907728 + MIR SINE MIR 14 132 -130 410 216 69 99 chr15 26474608 26474697 -74905824 - LTR37B LTR ERV1 -59 409 319 2294 59 3 53 chr15 26474697 26475000 -74905521 - AluY SINE Alu -23 288 1 410 216 69 99 chr15 26475000 26475142 -74905379 - LTR37B LTR ERV1 -149 319 185 1627 228 97 43 chr15 26475456 26475994 -74904527 + MLT1F1 LTR MaLR 1 567 0 263 146 0 0 chr15 26476697 26476745 -74903776 - L1MA3 LINE L1 0 6305 6258 219 250 250 9 chr15 26476752 26476864 -74903657 - MIR SINE MIR -14 248 110 211 245 6 37 chr15 26477474 26477637 -74902884 + (CA)n Simple_repeat Simple_repeat 1 158 0 1639 244 93 14 chr15 26477665 26478170 -74902351 - L1M4 LINE L1 -1139 5007 4463 430 243 5 60 chr15 26478847 26479032 -74901489 + (CAGA)n Simple_repeat Simple_repeat 4 178 0 462 136 0 0 chr15 26479041 26479122 -74901399 + (TGGA)n Simple_repeat Simple_repeat 4 84 0 313 290 21 14 chr15 26479260 26479405 -74901116 + (TAGA)n Simple_repeat Simple_repeat 2 147 0 236 248 165 15 chr15 26479965 26480098 -74900423 - L1MC/D LINE L1 -1988 5820 5668 280 265 59 82 chr15 26480252 26480471 -74900050 - L1MC/D LINE L1 -2263 5545 5332 2002 101 44 83 chr15 26480648 26481035 -74899486 - THE1C LTR MaLR 0 375 4 11081 101 13 32 chr15 26481038 26482648 -74897873 - THE1C-int LTR MaLR 0 1580 1 2199 117 24 35 chr15 26482650 26483025 -74897496 - THE1C LTR MaLR -2 373 3 608 309 105 39 chr15 26483066 26483429 -74897092 - MLT1J2 LTR MaLR -2 448 62 1026 217 90 32 chr15 26584141 26584418 -74796103 - MLT1E1 LTR MaLR -9 584 292 618 221 231 5 chr15 26584431 26584626 -74795895 - MER70A LTR ERVL -1 471 233 2155 181 98 65 chr15 26584726 26584974 -74795547 - L1MDa LINE L1 -4423 2117 1879 2196 136 3 3 chr15 26584974 26585276 -74795245 + AluSx SINE Alu 1 302 -10 2155 181 98 65 chr15 26585276 26585556 -74794965 - L1MDa LINE L1 -4661 1879 1564 2495 58 0 23 chr15 26585556 26585865 -74794656 - AluY SINE Alu -9 302 1 2155 181 98 65 chr15 26585865 26585948 -74794573 - L1MDa LINE L1 -4976 1564 1485 1994 183 68 8 chr15 26586694 26587092 -74793429 + MER95 LTR ERV 10 431 0 1537 254 81 22 chr15 26587532 26588077 -74792444 + L1ME3A LINE L1 5052 5563 -607 1144 210 75 42 chr15 26588077 26588410 -74792111 - MER2 DNA MER2_type 0 344 1 1537 254 81 22 chr15 26588410 26588510 -74792011 + L1ME3A LINE L1 5563 5656 -514 1359 205 27 102 chr15 26588510 26588914 -74791607 + MLT1A2 LTR MaLR 1 374 0 1537 254 81 22 chr15 26588914 26589097 -74791424 + L1ME3A LINE L1 5656 5924 -246 352 178 55 27 chr15 26589233 26589306 -74791215 - MER70B LTR ERVL -489 89 15 1448 167 42 14 chr15 26589506 26589793 -74790728 - MLT1E1 LTR MaLR -359 295 1 2180 141 0 0 chr15 26589993 26590297 -74790224 - AluSx SINE Alu -8 304 1 804 228 61 88 chr15 26593219 26593548 -74786973 + MLT2D LTR ERVL 47 366 -48 3386 109 56 8 chr15 26593625 26594158 -74786363 - Tigger3(Golem) DNA MER2_type 0 3029 2471 646 293 78 57 chr15 26594272 26594784 -74785737 - HAL1b LINE L1 -809 539 17 1780 152 4 4 chr15 26595986 26596262 -74784259 - AluJb SINE Alu -36 276 1 1801 199 11 16 chr15 26597528 26597895 -74782626 - MLT1A1 LTR MaLR 0 365 1 2360 265 50 4 chr15 26598045 26598781 -74781740 - L1M4 LINE L1 -3013 3133 2364 2635 175 49 35 chr15 26598893 26598945 -74781576 + L1MB7 LINE L1 5437 5487 -697 2532 60 0 3 chr15 26598945 26599243 -74781278 + AluY SINE Alu 1 297 -14 2635 175 49 35 chr15 26599243 26599766 -74780755 + L1MB7 LINE L1 5487 6020 -164 625 178 6 89 chr15 26599793 26599973 -74780548 - FRAM SINE Alu -11 165 1 522 220 78 0 chr15 26599975 26600116 -74780405 + L1MB8 LINE L1 6022 6173 -5 289 186 0 36 chr15 26600203 26600270 -74780251 - L1M3 LINE L1 -580 5603 5541 415 329 72 50 chr15 26600274 26600691 -74779830 + HAL1b LINE L1 351 776 -572 2262 114 0 0 chr15 26601005 26601302 -74779219 + AluSx SINE Alu 3 299 -13 279 276 9 9 chr15 26601359 26601464 -74779057 + L1M4 LINE L1 2148 2252 -3894 2311 91 0 0 chr15 26601880 26602176 -74778345 - AluY SINE Alu -15 296 1 317 232 0 14 chr15 26602328 26602397 -74778124 - MLT2C2 LTR ERVL -396 68 1 9553 160 50 56 chr15 26602397 26604057 -74776464 - ERVL-C2 LTR ERVL -8 5756 4108 2279 77 0 3 chr15 26604057 26604343 -74776178 - AluSg SINE Alu -25 285 1 9553 160 50 56 chr15 26604343 26604616 -74775905 - ERVL-C2 LTR ERVL -1656 4108 3835 207 0 0 0 chr15 26604622 26604645 -74775876 + (GA)n Simple_repeat Simple_repeat 1 23 0 336 227 0 0 chr15 26604650 26604738 -74775783 + G-rich Low_complexity Low_complexity 1 88 0 1612 197 49 12 chr15 26604738 26605083 -74775438 - MLT2D LTR ERVL -36 378 21 490 162 20 10 chr15 26605091 26605190 -74775331 - L1MEc LINE L1 -2352 3863 3764 * 1490 243 33 27 chr15 26605189 26605769 -74774752 - L1M4 LINE L1 -2985 3161 2110 1170 262 25 11 chr15 26605876 26606242 -74774279 - L1MEc LINE L1 -3353 2862 2492 286 235 25 12 chr15 26606271 26606352 -74774169 - L1MEc LINE L1 -4699 1697 1616 1355 302 66 30 chr15 26606440 26607421 -74773100 - L1MEd LINE L1 -2990 3139 2123 1410 279 114 36 chr15 26607767 26609062 -74771459 - L1MEd LINE L1 -4584 1726 299 323 196 59 23 chr15 26609746 26609918 -74770603 - MER5C DNA MER1_type 0 324 57 819 269 18 0 chr15 26610167 26610394 -74770127 - MIR SINE MIR -24 238 8 237 238 71 40 chr15 26610467 26610593 -74769928 + MER117 DNA MER1_type 18 147 -50 30827 93 15 7 chr15 26610954 26615586 -74764935 - L1P3 LINE L1 -557 5597 928 313 277 90 17 chr15 26615686 26615895 -74764626 - L1MC4 LINE L1 -135 7739 7462 317 182 0 15 chr15 26616823 26616889 -74763632 + MIR SINE MIR 87 151 -111 311 314 116 25 chr15 26616949 26617191 -74763330 - MLT1L LTR MaLR -38 577 314 1854 149 53 0 chr15 26618306 26618741 -74761780 - L1MA4A LINE L1 -23 6280 5762 519 190 39 73 chr15 26619156 26619335 -74761186 - HAL1 LINE L1 -662 1845 1673 2550 64 0 13 chr15 26619373 26619684 -74760837 + AluY SINE Alu 1 307 -4 949 186 54 50 chr15 26619763 26619865 -74760656 - L1ME LINE L1 -450 6108 6008 2084 121 55 28 chr15 26619865 26620229 -74760292 - THE1C LTR MaLR -1 374 1 949 186 54 50 chr15 26620229 26620347 -74760174 - L1ME LINE L1 -550 6008 5887 2578 213 53 13 chr15 26620347 26620364 -74760157 - L1ME LINE L1 -1801 4739 4724 1238 218 0 36 chr15 26620364 26620612 -74759909 - MER8 DNA MER2_type 0 239 1 2578 213 53 13 chr15 26620612 26621270 -74759251 - L1ME LINE L1 -1816 4724 4037 963 198 37 29 chr15 26621301 26621543 -74758978 - L1ME LINE L1 -4150 2390 2147 7760 105 4 3 chr15 26621643 26622703 -74757818 - L1P3 LINE L1 -5394 1067 7 186 148 93 0 chr15 26622970 26623024 -74757497 + L2 LINE L2 2475 2533 -781 2377 236 47 24 chr15 26623361 26623683 -74756838 + L1ME3 LINE L1 4882 5195 -969 1783 190 0 10 chr15 26623683 26623988 -74756533 + AluJb SINE Alu 1 302 -10 2377 236 47 24 chr15 26623988 26624710 -74755811 + L1ME3 LINE L1 5195 5942 -222 1789 211 81 86 chr15 26624715 26625317 -74755204 + MLT1E2 LTR MaLR 1 600 -25 334 213 75 94 chr15 26625331 26625491 -74755030 + L1ME3 LINE L1 5991 6147 -15 * 651 160 10 2 chr15 26625475 26625614 -74754907 + L1MA4 LINE L1 5791 5930 -244 232 304 63 58 chr15 26625707 26625914 -74754607 + L2 LINE L2 2870 3077 -236 1013 210 63 60 chr15 26627349 26627667 -74752854 + LTR55 LTR ERV 1 319 -229 256 196 0 0 chr15 26627667 26627713 -74752808 - MLT2C1 LTR ERVL 0 397 352 2348 139 106 24 chr15 26627725 26628011 -74752510 + Tigger3b DNA MER2_type 1 262 -2766 549 80 0 0 chr15 26628011 26628086 -74752435 + (TA)n Simple_repeat Simple_repeat 1 75 0 2455 79 7 0 chr15 26628086 26628390 -74752131 - AluY SINE Alu -5 306 1 2348 139 106 24 chr15 26628390 26628525 -74751996 + Tigger3b DNA MER2_type 261 458 -773 242 249 83 89 chr15 26628892 26628940 -74751581 - L1ME4a LINE L1 -21 6100 6053 1769 158 10 29 chr15 26628940 26629250 -74751271 + AluJb SINE Alu 5 308 -4 242 249 83 89 chr15 26629250 26629370 -74751151 - L1ME4a LINE L1 -68 6053 5933 343 287 79 43 chr15 26629430 26629594 -74750927 + MLT1J2 LTR MaLR 1 170 -276 363 207 157 41 chr15 26629734 26629911 -74750610 + MLT1J1 LTR MaLR 207 460 -51 890 259 32 41 chr15 26630211 26630555 -74749966 - L1ME4a LINE L1 -219 5951 5611 915 292 216 17 chr15 26630555 26630878 -74749643 - L2 LINE L2 -245 3068 2811 2350 82 3 16 chr15 26630878 26631182 -74749339 - AluSg SINE Alu -10 300 1 915 292 216 17 chr15 26631182 26631771 -74748750 - L2 LINE L2 -502 2811 1976 275 299 84 13 chr15 26631926 26632080 -74748441 - MIR3 SINE MIR -37 171 7 235 259 0 0 chr15 26632763 26632817 -74747704 + (TA)n Simple_repeat Simple_repeat 1 54 0 2300 128 31 31 chr15 26634763 26635121 -74745400 - THE1B LTR MaLR -6 358 1 2369 125 25 0 chr15 26635756 26636109 -74744412 + THE1B LTR MaLR 1 362 -2 8450 104 24 36 chr15 26636109 26637365 -74743156 + THE1B-int LTR MaLR 4 1244 -336 4853 147 17 40 chr15 26637486 26638362 -74742159 - MER4D LTR ERV1 -46 857 2 2288 79 46 74 chr15 26638425 26639145 -74741376 - MER4A LTR ERV1 0 779 1 905 293 53 20 chr15 26639300 26639655 -74740866 + MLT1I LTR MaLR 10 376 -33 425 239 101 14 chr15 26639795 26639933 -74740588 - MER74B LTR ERVL 0 622 473 1971 191 22 29 chr15 26640102 26640511 -74740010 - MER74A LTR ERVL -152 406 1 348 358 3 52 chr15 26640522 26640849 -74739672 - L1M4 LINE L1 -3726 2420 2110 2096 155 0 0 chr15 26641232 26641542 -74738979 - AluSx SINE Alu -2 310 1 9275 197 11 14 chr15 26641838 26643351 -74737170 - L1 LINE L1 -1862 4284 2768 2575 52 0 26 chr15 26643351 26643661 -74736860 + AluY SINE Alu 1 302 -9 225 0 0 0 chr15 26643661 26643686 -74736835 + (TA)n Simple_repeat Simple_repeat 2 26 0 9275 197 11 14 chr15 26643686 26644147 -74736374 - L1 LINE L1 -3376 2770 2315 2005 209 111 3 chr15 26644141 26645547 -74734974 - L1PBa LINE L1 -5159 1704 2 * 334 200 0 0 chr15 26645604 26645659 -74734862 + Tigger5 DNA MER2_type 1 55 -2268 387 203 0 0 chr15 26645661 26645730 -74734791 + Tigger5 DNA MER2_type 2255 2323 0 2327 92 14 0 chr15 26646019 26646313 -74734208 - AluSc SINE Alu -11 298 1 21 0 0 0 chr15 26646334 26646355 -74734166 + AT_rich Low_complexity Low_complexity 1 21 0 1743 140 4 0 chr15 26646360 26646617 -74733904 - Tigger3(Golem) DNA MER2_type -1 3028 2771 547 178 0 0 chr15 26646614 26646704 -74733817 - Tigger3(Golem) DNA MER2_type -2887 142 53 * 450 283 94 11 chr15 26647259 26647439 -74733082 - LTR33 LTR ERVL -322 199 5 2093 150 17 0 chr15 26648641 26648941 -74731580 + AluJb SINE Alu 1 305 -7 257 313 61 17 chr15 26650436 26650551 -74729970 - L2 LINE L2 -22 3291 3172 888 291 86 78 chr15 26650717 26651690 -74728831 - L2 LINE L2 -420 2894 1914 216 305 136 0 chr15 26652166 26652284 -74728237 + MIR SINE MIR 117 250 -12 2394 139 50 5 chr15 26652457 26652860 -74727661 - MSTB LTR MaLR -5 421 1 214 317 159 21 chr15 26654261 26654406 -74726115 - L2 LINE L2 -209 3063 2899 233 232 73 12 chr15 26656193 26656275 -74724246 + L2 LINE L2 2683 2769 -545 235 239 34 80 chr15 26656542 26656630 -74723891 + L2 LINE L2 3183 3266 -47 273 98 0 0 chr15 26656640 26656681 -74723840 + (TGGA)n Simple_repeat Simple_repeat 1 41 0 371 363 71 8 chr15 26660265 26660505 -74720016 - MIR SINE MIR 0 262 8 26 0 0 0 chr15 26660718 26660744 -74719777 + AT_rich Low_complexity Low_complexity 1 26 0 1136 123 0 27 chr15 26660769 26660988 -74719533 - L1MA4 LINE L1 -10 6290 6078 411 21 0 0 chr15 26661462 26661510 -74719011 + (TG)n Simple_repeat Simple_repeat 1 48 0 364 341 66 23 chr15 26662063 26662321 -74718200 - L3 LINE CR1 -199 1378 1110 300 249 55 73 chr15 26662323 26662488 -74718033 - L1ME4a LINE L1 0 6121 5960 2425 160 9 21 chr15 26662907 26663338 -74717183 - MSTB LTR MaLR 0 426 1 9176 152 38 15 chr15 26663339 26664916 -74715605 - MSTB-int LTR MaLR -1 1650 37 2523 113 23 57 chr15 26664934 26665375 -74715146 - MSTB LTR MaLR 0 426 1 233 246 33 8 chr15 26665428 26665550 -74714971 - L1ME4a LINE L1 -753 5393 5269 2591 69 3 0 chr15 26665734 26666038 -74714483 - AluY SINE Alu -6 305 1 23 33 0 0 chr15 26666040 26666070 -74714451 + AT_rich Low_complexity Low_complexity 1 30 0 367 317 51 31 chr15 26666382 26666744 -74713777 - L1ME4a LINE L1 -1536 4610 4100 522 306 19 40 chr15 26666866 26667242 -74713279 - L1ME4a LINE L1 -3624 2522 2155 319 373 63 0 chr15 26667577 26667735 -74712786 - HAL1 LINE L1 -814 1693 1526 839 199 86 0 chr15 26669069 26669255 -74711266 + MER58A DNA MER1_type 19 220 -4 1467 258 37 52 chr15 26669255 26669817 -74710704 - MER74B LTR ERVL 0 622 69 356 173 95 19 chr15 26669823 26669929 -74710592 + FLAM SINE Alu 66 131 -2 234 116 0 0 chr15 26670137 26670180 -74710341 + (TG)n Simple_repeat Simple_repeat 1 43 0 201 259 0 28 chr15 26672089 26672197 -74708324 + (TG)n Simple_repeat Simple_repeat 1 105 0 449 251 34 23 chr15 26672209 26672384 -74708137 + (TATG)n Simple_repeat Simple_repeat 4 180 0 188 178 0 22 chr15 26672442 26672487 -74708034 + (TG)n Simple_repeat Simple_repeat 1 44 0 301 270 35 26 chr15 26672488 26672603 -74707918 + (TATATG)n Simple_repeat Simple_repeat 4 119 0 232 171 45 11 chr15 26672606 26672694 -74707827 + (TG)n Simple_repeat Simple_repeat 2 92 0 338 200 75 13 chr15 26673353 26673433 -74707088 + MIR SINE MIR 67 152 -56 298 307 44 15 chr15 26674193 26674330 -74706191 - LTR33 LTR ERVL 0 521 381 1964 178 138 10 chr15 26674628 26675033 -74705488 + LTR32 LTR ERVL 15 471 0 2144 128 20 0 chr15 26675478 26675775 -74704746 + AluSx SINE Alu 1 303 -9 2295 58 3 88 chr15 26675777 26676107 -74704414 + AluY SINE Alu 1 302 -9 213 94 0 0 chr15 26676298 26676330 -74704191 + (TAA)n Simple_repeat Simple_repeat 1 32 0 1824 270 55 24 chr15 26676586 26677308 -74703213 + L1MC3 LINE L1 5856 6600 -1185 1601 181 45 3 chr15 26677367 26677681 -74702840 + MSTB LTR MaLR 98 424 -2 741 205 19 0 chr15 26677684 26677840 -74702681 + L1MC3 LINE L1 6616 6774 -1011 384 288 107 0 chr15 26678939 26679116 -74701405 - L1MC/D LINE L1 -2010 5798 5603 614 264 48 32 chr15 26679572 26679901 -74700620 + L1M4b LINE L1 -254 119 -6165 1500 137 46 76 chr15 26679958 26680287 -74700234 + MER2 DNA MER2_type 25 343 -2 1535 189 80 141 chr15 26680290 26681521 -74699000 + L1M4b LINE L1 377 1478 -4906 195 42 0 0 chr15 26681521 26681545 -74698976 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1535 189 80 141 chr15 26681545 26681656 -74698865 + L1M4b LINE L1 1478 1594 -4790 2406 98 0 0 chr15 26681658 26681954 -74698567 + AluSx SINE Alu 1 296 -16 260 210 0 0 chr15 26683602 26683664 -74696857 + A-rich Low_complexity Low_complexity 1 62 0 830 155 8 0 chr15 26683701 26683830 -74696691 + FLAM_C SINE Alu 1 130 -13 354 246 38 121 chr15 26683838 26684184 -74696337 + L1M4b LINE L1 1645 2112 -4451 380 356 20 57 chr15 26684214 26684461 -74696060 + L1MEc LINE L1 1734 1971 -4425 186 161 0 0 chr15 26685399 26685430 -74695091 - L2 LINE L2 -18 3254 3224 185 246 92 0 chr15 26685432 26685497 -74695024 - MIR SINE MIR -92 170 100 1828 206 96 0 chr15 26685497 26685934 -74694587 - MLT2B1 LTR ERVL 0 520 42 3576 148 39 0 chr15 26686780 26687427 -74693094 - L1PB4 LINE L1 -1 6155 5484 5544 197 12 11 chr15 26687427 26688629 -74691892 - L1PB4 LINE L1 -1024 5122 3919 1163 139 0 0 chr15 26688625 26688819 -74691702 + L1PB4 LINE L1 3725 3918 -2228 * 303 278 167 17 chr15 26691277 26691457 -74689064 + L2 LINE L2 3014 3220 -93 182 71 0 71 chr15 26694927 26694969 -74685552 + (GGAGAA)n Simple_repeat Simple_repeat 5 43 0 281 129 0 32 chr15 26695472 26695534 -74684987 + (CCG)n Simple_repeat Simple_repeat 3 62 0 42 71 0 0 chr15 26695616 26695700 -74684821 + GC_rich Low_complexity Low_complexity 1 84 0 21 0 0 0 chr15 26695876 26695897 -74684624 + GC_rich Low_complexity Low_complexity 1 21 0 28 71 0 0 chr15 26695925 26695981 -74684540 + GC_rich Low_complexity Low_complexity 1 56 0 2396 101 0 3 chr15 26696397 26696704 -74683817 + AluSx SINE Alu 1 306 -6 379 325 55 39 chr15 26696704 26696948 -74683573 + L1MEc LINE L1 2728 2978 -3237 380 214 43 43 chr15 26697647 26697764 -74682757 + MLT1G1 LTR MaLR 477 593 -2 225 246 53 79 chr15 26697853 26697967 -74682554 + MIR SINE MIR 134 244 -18 1614 137 63 3 chr15 26698112 26698397 -74682124 + AluJo SINE Alu 1 302 -10 1897 68 129 4 chr15 26698398 26698662 -74681859 + AluSg1 SINE Alu 1 297 -12 1416 104 62 78 chr15 26699606 26699655 -74680866 + L1MA8 LINE L1 5988 6036 -255 2526 62 7 0 chr15 26699655 26699959 -74680562 + AluSp SINE Alu 1 306 -7 1416 104 62 78 chr15 26699959 26700218 -74680303 + L1MA8 LINE L1 6036 6291 0 1174 182 146 3 chr15 26700826 26701158 -74679363 - MER47B DNA MER2_type -1 417 1 181 158 70 70 chr15 26701383 26701440 -74679081 + MIR SINE MIR 19 75 -133 295 286 107 58 chr15 26701539 26701745 -74678776 + MLT1K LTR MaLR 329 544 -44 201 113 16 32 chr15 26702202 26702264 -74678257 + (CGCGG)n Simple_repeat Simple_repeat 4 64 0 25 0 0 0 chr15 26704447 26704472 -74676049 + AT_rich Low_complexity Low_complexity 1 25 0 1518 226 54 41 chr15 26707401 26707865 -74672656 + L2 LINE L2 2843 3312 -1 2134 89 25 70 chr15 26710314 26710641 -74669880 - AluSx SINE Alu 0 312 1 2185 122 44 33 chr15 26710718 26711078 -74669443 - THE1B LTR MaLR 0 364 1 247 344 258 7 chr15 26711429 26711580 -74668941 - MIR SINE MIR -73 189 1 238 241 19 0 chr15 26711960 26712014 -74668507 + MIR SINE MIR 87 141 -67 553 278 137 26 chr15 26712073 26712386 -74668135 - LTR50 LTR ERVL -26 769 422 2552 282 84 54 chr15 26712596 26714123 -74666398 - ERVL LTR ERVL -321 5443 3871 965 159 17 82 chr15 26714126 26714234 -74666287 - MER20 DNA MER1_type 0 219 132 2818 175 35 14 chr15 26714234 26714743 -74665778 + MLT2B1 LTR ERVL 1 520 0 965 159 17 82 chr15 26714743 26714867 -74665654 - MER20 DNA MER1_type -87 132 2 1042 339 91 5 chr15 26714883 26715521 -74665000 - ERVL LTR ERVL -1904 3860 3168 4595 126 54 26 chr15 26715778 26716826 -74663695 + MER52C LTR ERV1 1 1278 0 1367 302 62 53 chr15 26716833 26717106 -74663415 - ERVL LTR ERVL -2944 2820 2551 2319 111 0 0 chr15 26717106 26717404 -74663117 + AluSx SINE Alu 1 298 -14 1367 302 62 53 chr15 26717404 26717992 -74662529 - ERVL LTR ERVL -3213 2551 1952 1607 249 89 31 chr15 26718290 26718765 -74661756 - L1ME2 LINE L1 -9 6155 5638 1533 118 107 48 chr15 26718765 26718910 -74661611 + AluSx SINE Alu 1 136 -176 2282 89 3 3 chr15 26718910 26719202 -74661319 + AluSg1 SINE Alu 1 292 -17 1533 118 107 48 chr15 26719202 26719345 -74661176 + AluSx SINE Alu 136 306 -6 1607 249 89 31 chr15 26719345 26719456 -74661065 - L1ME2 LINE L1 -526 5638 5535 200 310 70 10 chr15 26720153 26720253 -74660268 - L2 LINE L2 -3 3269 3164 222 284 91 11 chr15 26720438 26720526 -74659995 - MIR SINE MIR -140 122 28 2574 158 68 24 chr15 26721676 26722190 -74658331 - MER21A LTR ERV1 0 931 272 2686 55 0 0 chr15 26722190 26722499 -74658022 - AluY SINE Alu -2 309 1 2574 158 68 24 chr15 26722499 26722784 -74657737 - MER21A LTR ERV1 -659 272 1 23 0 0 0 chr15 26722925 26722948 -74657573 + AT_rich Low_complexity Low_complexity 1 23 0 1508 153 122 68 chr15 26723298 26723709 -74656812 - LTR12 LTR ERV1 -229 485 53 252 231 0 0 chr15 26723709 26723761 -74656760 - LTR30 LTR ERV1 -670 52 1 1361 272 91 13 chr15 26723842 26724185 -74656336 - LTR19-int LTR ERV1 -3744 3152 2762 2403 65 0 43 chr15 26724185 26724509 -74656012 - AluY SINE Alu 0 311 2 1361 272 91 13 chr15 26724509 26724629 -74655892 - LTR19-int LTR ERV1 -4134 2762 2653 584 148 142 6 chr15 26724819 26724988 -74655533 - LTR19-int LTR ERV1 -2321 3265 3074 2329 88 0 7 chr15 26725151 26725446 -74655075 - AluSc SINE Alu -16 293 1 280 273 118 0 chr15 26725514 26725624 -74654897 + MER94 DNA DNA 12 134 0 3999 148 19 3 chr15 26726358 26727026 -74653495 + MER54B LTR ERVL 4 682 -111 797 232 0 4 chr15 26727571 26727853 -74652668 + (TGGA)n Simple_repeat Simple_repeat 1 280 0 588 212 11 6 chr15 26727878 26728057 -74652464 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 249 286 18 0 chr15 26728124 26728180 -74652341 + L2 LINE L2 3246 3302 -11 354 230 147 9 chr15 26728998 26729175 -74651346 + L1MC4a LINE L1 6441 6604 -1204 1478 238 86 52 chr15 26729229 26729287 -74651234 + L1MC4 LINE L1 6870 6925 -1117 2072 149 10 0 chr15 26729287 26729596 -74650925 + AluJo SINE Alu 1 312 0 1478 238 86 52 chr15 26729596 26730383 -74650138 + L1MC4 LINE L1 6925 7902 -140 1464 105 0 11 chr15 26730467 26730657 -74649864 + AluSq SINE Alu 1 188 -125 4063 115 3 2 chr15 26730658 26731248 -74649273 + LTR10C LTR ERV1 1 591 0 513 332 103 19 chr15 26731250 26731512 -74649009 + LTR10C-int LTR ERV1 6 289 -6360 321 213 82 57 chr15 26731792 26731942 -74648579 + L1MC4 LINE L1 6500 6702 -1139 208 175 25 0 chr15 26731943 26731983 -74648538 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 323 253 0 74 chr15 26731992 26732087 -74648434 + L1MC4 LINE L1 6615 6702 -1340 313 286 0 33 chr15 26732108 26732199 -74648322 + L1MC4 LINE L1 6615 6702 -1340 310 300 22 11 chr15 26732231 26732321 -74648200 + L1MC4 LINE L1 6614 6704 -1338 323 231 14 53 chr15 26732334 26732475 -74648046 + L1MC4 LINE L1 6558 6646 -1139 308 235 0 98 chr15 26732423 26732525 -74647996 - L1MC4 LINE L1 -1339 6703 6612 * 313 242 33 55 chr15 26732490 26732581 -74647940 + L1MC4 LINE L1 6614 6702 -1340 303 258 11 54 chr15 26732588 26732681 -74647840 + L1MC4 LINE L1 6614 6702 -1340 294 148 0 37 chr15 26732682 26732763 -74647758 + (CATATA)n Simple_repeat Simple_repeat 2 79 0 341 223 32 64 chr15 26732763 26732857 -74647664 + L1MC4 LINE L1 6614 6704 -1338 417 298 0 0 chr15 26733319 26733460 -74647061 + A-rich Low_complexity Low_complexity 1 141 0 2015 131 64 43 chr15 26733470 26733751 -74646770 + Harlequin LTR ERV1 1896 2170 -4726 2285 96 3 3 chr15 26733751 26734043 -74646478 + AluY SINE Alu 1 292 -19 2015 131 64 43 chr15 26734043 26734324 -74646197 + Harlequin LTR ERV1 2170 2470 -4426 438 306 19 0 chr15 26734551 26734708 -74645813 + L1MCc LINE L1 264 423 -6000 246 288 14 0 chr15 26734812 26734885 -74645636 - L1MCc LINE L1 -5507 916 843 2366 258 59 49 chr15 26734902 26736231 -74644290 + L1MCc LINE L1 1192 2507 -4615 2266 111 3 16 chr15 26736231 26736538 -74643983 + AluSx SINE Alu 1 303 -9 2366 258 59 49 chr15 26736538 26736866 -74643655 + L1MCc LINE L1 2507 2830 -4292 1577 129 37 0 chr15 26736866 26737083 -74643438 + AluSx SINE Alu 1 225 -87 2366 258 59 49 chr15 26737083 26737183 -74643338 + L1MCc LINE L1 2830 3177 -3945 2136 132 3 3 chr15 26737960 26738255 -74642266 - AluSx SINE Alu -17 295 1 226 232 214 36 chr15 26738535 26738647 -74641874 + MIR SINE MIR 119 250 -12 837 256 156 14 chr15 26738800 26739160 -74641361 + MER20B DNA MER1_type 350 760 -23 218 111 56 0 chr15 26741707 26741743 -74638778 - MER91B DNA MER1_type -129 61 24 730 245 21 21 chr15 26741850 26742038 -74638483 - MER58A DNA MER1_type 0 224 37 289 364 26 7 chr15 26743767 26743921 -74636600 + MIR SINE MIR 92 248 -14 482 113 0 113 chr15 26745573 26745679 -74634842 - AluSg/x SINE Alu -1 308 215 3610 130 37 0 chr15 26745679 26746249 -74634272 - LTR10C LTR ERV1 0 591 1 2421 310 60 23 chr15 26746294 26746454 -74634067 - HERVI LTR ERV1 -79 7706 7553 2455 52 38 0 chr15 26746454 26746743 -74633778 - AluY SINE Alu -11 300 1 2421 310 60 23 chr15 26746743 26747771 -74632750 - HERVI LTR ERV1 -232 7553 6474 4356 146 21 8 chr15 26747874 26748532 -74631989 + L1P LINE L1 3917 4588 -1558 2780 93 3 11 chr15 26748532 26748899 -74631622 + THE1B LTR MaLR 1 364 0 4356 146 21 8 chr15 26748899 26749016 -74631505 + L1P LINE L1 4588 4702 -1444 1096 100 0 17 chr15 26749959 26750139 -74630382 + (TTCC)n Simple_repeat Simple_repeat 1 177 0 360 346 23 8 chr15 26750140 26750270 -74630251 + CT-rich Low_complexity Low_complexity 5 136 0 11656 24 1 1 chr15 26750370 26751721 -74628800 + L1P LINE L1 3537 4888 -1258 6595 103 1 15 chr15 26751821 26752824 -74627697 + L1P LINE L1 2529 3517 -2629 2168 106 0 3 chr15 26754512 26754817 -74625704 - AluSx SINE Alu 0 304 1 1562 197 37 34 chr15 26754817 26755167 -74625354 - MSTD LTR MaLR -43 353 3 1316 234 55 2 chr15 26755340 26755738 -74624783 - L1M4 LINE L1 -2098 5467 5049 522 157 11 0 chr15 26755838 26755927 -74624594 - L1PBa LINE L1 -6773 90 1 * 2579 258 74 14 chr15 26755921 26756858 -74623663 - L1M4 LINE L1 -4311 3254 2262 414 344 176 30 chr15 26756994 26758094 -74622427 - L2 LINE L2 -19 3253 1978 1159 113 0 6 chr15 26758320 26758488 -74622033 - AluSg/x SINE Alu -8 304 138 233 160 0 20 chr15 26758540 26758590 -74621931 + A-rich Low_complexity Low_complexity 2 50 0 1752 156 96 28 chr15 26758832 26759185 -74621336 - MLT1B LTR MaLR -11 379 3 1488 189 84 112 chr15 26759189 26759614 -74620907 + LTR8 LTR ERV1 4 375 -316 535 159 9 28 chr15 26760252 26760359 -74620162 - MER53 DNA DNA -82 107 3 3135 80 0 3 chr15 26761232 26761608 -74618913 - THE1C LTR MaLR 0 375 1 5835 103 4 9 chr15 26761608 26762416 -74618105 - THE1C-int LTR MaLR 0 1580 777 712 268 59 75 chr15 26762998 26763442 -74617079 + MLT1J LTR MaLR 24 511 0 5623 61 12 10 chr15 26763707 26764427 -74616094 - Harlequin LTR ERV1 -5912 984 263 2072 107 20 57 chr15 26764407 26764761 -74615760 - Harlequin LTR ERV1 -6497 399 59 * 2468 50 0 7 chr15 26764933 26765232 -74615289 + AluY SINE Alu 2 298 -13 1282 147 14 9 chr15 26765252 26765463 -74615058 + AluJb SINE Alu 85 296 -16 2082 112 0 10 chr15 26765765 26766069 -74614452 - AluSx SINE Alu -11 301 1 1432 209 0 0 chr15 26766402 26766660 -74613861 - L1PB4 LINE L1 -12 6144 5887 1115 203 16 32 chr15 26767361 26767442 -74613079 + L1 LINE L1 4476 4557 -1589 2341 77 27 0 chr15 26767442 26767740 -74612781 + AluSp SINE Alu 1 306 -7 1115 203 16 32 chr15 26767740 26767909 -74612612 + L1 LINE L1 4557 4722 -1424 13923 53 3 14 chr15 26768020 26769724 -74610797 - Harlequin LTR ERV1 -2517 4379 2693 2682 77 0 0 chr15 26771276 26771613 -74608908 - L1MA2 LINE L1 -370 5934 5598 2089 92 7 50 chr15 26771616 26771949 -74608572 - AluSx SINE Alu 0 312 1 381 229 31 0 chr15 26772111 26772207 -74608314 - MER103 DNA DNA -9 157 59 699 207 94 48 chr15 26772308 26772672 -74607849 + MLT1C LTR MaLR 5 458 -9 1892 77 28 4 chr15 26773058 26773306 -74607215 + L1PA13 LINE L1 5908 6161 -2 1109 146 131 16 chr15 26773376 26773647 -74606874 + MSTA LTR MaLR 91 428 0 198 244 44 0 chr15 26774085 26774130 -74606391 + MIR SINE MIR 72 118 -90 183 239 22 0 chr15 26774569 26774615 -74605906 + L2 LINE L2 3262 3308 -5 213 39 0 0 chr15 26774809 26774835 -74605686 + (TAA)n Simple_repeat Simple_repeat 2 27 0 3803 107 23 12 chr15 26776831 26777020 -74603501 + LTR43 LTR ERV1 25 211 -391 1864 128 7 7 chr15 26777020 26777302 -74603219 + AluSx SINE Alu 16 297 -15 3803 107 23 12 chr15 26777302 26777683 -74602838 + LTR43 LTR ERV1 211 601 -1 459 246 159 34 chr15 26777953 26778217 -74602304 - L1MCa LINE L1 -2572 3854 3558 2328 250 62 22 chr15 26778226 26778430 -74602091 - L1MCa LINE L1 -3599 2827 2632 396 0 0 0 chr15 26778430 26778474 -74602047 + (TG)n Simple_repeat Simple_repeat 2 45 0 2328 250 62 22 chr15 26778474 26779396 -74601125 - L1MCa LINE L1 -3794 2632 1516 840 251 70 18 chr15 26779497 26779827 -74600694 + L1M4 LINE L1 4446 4792 -1354 305 225 25 38 chr15 26779839 26779919 -74600602 - MER5B DNA MER1_type -98 80 2 572 295 116 68 chr15 26780795 26781432 -74599089 - L3 LINE CR1 -259 1318 651 297 297 87 14 chr15 26781649 26781787 -74598734 + MIR SINE MIR 6 153 -109 390 257 176 93 chr15 26781796 26782204 -74598317 - LTR67 LTR ERVL -2 555 114 3710 232 66 28 chr15 26782894 26783773 -74596748 + L1MEc LINE L1 1856 2774 -3441 2627 158 11 34 chr15 26783773 26784215 -74596306 + MSTB1 LTR MaLR 1 432 0 3710 232 66 28 chr15 26784215 26784758 -74595763 + L1MEc LINE L1 2774 3295 -2920 947 101 25 0 chr15 26785408 26785527 -74594994 + FLAM_C SINE Alu 1 122 -11 739 157 45 8 chr15 26785552 26785686 -74594835 - MSTA LTR MaLR -57 371 233 2686 223 29 51 chr15 26785697 26786696 -74593825 + L1M3c LINE L1 800 1794 -4519 1222 209 41 34 chr15 26787713 26788005 -74592516 - MLT1A2 LTR MaLR -78 296 3 299 306 19 37 chr15 26788143 26788414 -74592107 + L1M3c LINE L1 2473 2738 -3644 213 39 0 0 chr15 26788814 26788840 -74591681 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1914 106 26 4 chr15 26788840 26789105 -74591416 + AluSx SINE Alu 1 271 -41 538 225 125 21 chr15 26789653 26789822 -74590699 + MLT1J1 LTR MaLR 21 204 -246 2231 106 27 0 chr15 26789823 26790124 -74590397 - AluSx SINE Alu -3 309 1 353 262 143 60 chr15 26790395 26790731 -74589790 - L2 LINE L2 -543 2771 2408 2439 84 0 0 chr15 26790800 26791096 -74589425 - AluSq SINE Alu -17 296 1 381 216 55 80 chr15 26791098 26791209 -74589312 - L1M4 LINE L1 -4790 1856 1744 203 32 65 0 chr15 26791209 26791240 -74589281 + T-rich Low_complexity Low_complexity 3 35 0 381 216 55 80 chr15 26791240 26791438 -74589083 - L1M4 LINE L1 -4902 1744 1568 495 80 13 13 chr15 26794264 26794339 -74586182 + L1PA13 LINE L1 6082 6156 -7 259 376 50 0 chr15 26795067 26795168 -74585353 + MIR SINE MIR 20 125 -137 645 169 14 21 chr15 26795414 26795556 -74584965 + L1MA4A LINE L1 5983 6123 -180 403 223 0 21 chr15 26795559 26795653 -74584868 + L1MA4A LINE L1 6189 6280 -23 608 218 127 30 chr15 26797371 26797536 -74582985 + MER5A DNA MER1_type 9 189 0 227 230 6 0 chr15 26797769 26797816 -74582705 - MER5B DNA MER1_type -66 123 64 2233 169 0 24 chr15 26797816 26798188 -74582333 + MLT1A1 LTR MaLR 1 363 -2 184 75 25 25 chr15 26800182 26800222 -74580299 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 295 303 0 20 chr15 26800880 26800979 -74579542 - MIR3 SINE MIR -11 197 101 2202 108 0 0 chr15 26801345 26801640 -74578881 - AluSx SINE Alu -17 295 1 700 288 105 58 chr15 26802472 26803062 -74577459 - HAL1 LINE L1 -707 1800 1183 208 184 81 35 chr15 26803475 26803562 -74576959 + (CTGGGG)n Simple_repeat Simple_repeat 4 94 0 11856 65 15 0 chr15 26804002 26805476 -74575045 + Harlequin LTR ERV1 5401 6896 0 1679 203 14 23 chr15 26805476 26805934 -74574587 + LTR2B LTR ERV1 1 490 0 528 233 100 7 chr15 26806164 26806314 -74574207 - MER103 DNA DNA -2 164 1 603 240 0 0 chr15 26806355 26806480 -74574041 - L1M4 LINE L1 -5333 1209 1085 1477 225 37 44 chr15 26806505 26806853 -74573668 - L1M4 LINE L1 -6121 421 75 222 37 0 0 chr15 26806853 26806880 -74573641 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1477 225 37 44 chr15 26806880 26806940 -74573581 - L1M4 LINE L1 -6467 75 16 7906 19 0 4 chr15 26808113 26809057 -74571464 + L1HS LINE L1 5216 6155 0 4545 150 13 29 chr15 26809053 26809427 -74571094 + L1MCa LINE L1 1651 2030 -4396 * 1885 146 53 0 chr15 26809427 26809708 -74570813 + AluSx SINE Alu 1 296 -16 4545 150 13 29 chr15 26809708 26810182 -74570339 + L1MCa LINE L1 2030 2927 -3499 1914 71 71 0 chr15 26810668 26810907 -74569614 + AluSx SINE Alu 1 256 -56 371 201 169 58 chr15 26812439 26812578 -74567943 - MIR3 SINE MIR -43 165 31 260 154 19 0 chr15 26812864 26812916 -74567605 + (CCCCG)n Simple_repeat Simple_repeat 1 53 0 3157 80 2 88 chr15 26813104 26813604 -74566917 + LTR8 LTR ERV1 1 457 -234 607 272 96 27 chr15 26815040 26815320 -74565201 + L1ME4a LINE L1 5174 5433 -729 2266 107 0 0 chr15 26815320 26815610 -74564911 - AluSx SINE Alu -22 290 1 607 272 96 27 chr15 26815610 26815829 -74564692 + L1ME4a LINE L1 5433 5704 -458 831 174 0 0 chr15 26815832 26815964 -74564557 - AluSg/x SINE Alu -8 304 173 367 191 36 20 chr15 26816102 26816252 -74564269 + L1M3 LINE L1 5323 5537 -634 260 178 22 0 chr15 26816389 26816434 -74564087 - LTR16C LTR ERVL -247 244 199 893 279 14 9 chr15 26816467 26816686 -74563835 + LTR16C LTR ERVL 272 491 0 481 309 92 32 chr15 26817066 26817348 -74563173 - L2 LINE L2 -484 2830 2532 2036 122 14 0 chr15 26817915 26818210 -74562311 + AluSq SINE Alu 1 299 -14 2594 55 0 7 chr15 26819574 26819884 -74560637 + AluY SINE Alu 1 308 -3 279 247 50 111 chr15 26819973 26820112 -74560409 + L1ME4a LINE L1 5854 5969 -152 2124 86 32 4 chr15 26820112 26820391 -74560130 + AluSx SINE Alu 1 287 -25 279 247 50 111 chr15 26820391 26820530 -74559991 + L1ME4a LINE L1 5969 6115 -6 369 150 17 0 chr15 26820843 26820903 -74559618 + MLT1A2 LTR MaLR 1 61 -313 1068 257 115 41 chr15 26821217 26821704 -74558817 - LTR33A LTR ERVL 0 523 1 27 0 0 0 chr15 26821882 26821909 -74558612 + AT_rich Low_complexity Low_complexity 1 27 0 670 271 4 62 chr15 26822111 26822355 -74558166 - MLT1K LTR MaLR -3 585 356 266 259 75 75 chr15 26822373 26822547 -74557974 - MLT1K LTR MaLR -359 229 56 1140 170 57 145 chr15 26822624 26822942 -74557579 + AluJb SINE Alu 1 290 -12 222 348 0 65 chr15 26823006 26823111 -74557410 + L2 LINE L2 2487 2580 -734 835 204 122 5 chr15 26823111 26823307 -74557214 - MER20 DNA MER1_type 0 219 1 222 348 0 65 chr15 26823307 26823356 -74557165 + L2 LINE L2 2580 2631 -683 243 0 0 0 chr15 26823362 26823389 -74557132 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1640 171 0 0 chr15 26823485 26823730 -74556791 - AluSx SINE Alu -67 245 1 2024 142 0 43 chr15 26823899 26824223 -74556298 - AluSx SINE Alu -2 310 1 197 332 53 91 chr15 26824301 26824488 -74556033 + L2 LINE L2 2872 3051 -221 184 360 56 11 chr15 26824726 26824815 -74555706 + MIR SINE MIR 61 153 -109 2588 195 9 26 chr15 26825114 26825652 -74554869 + L1MB8 LINE L1 5542 6070 -108 1908 132 0 4 chr15 26825652 26825924 -74554597 + AluSx SINE Alu 1 271 -41 1243 183 12 74 chr15 26826026 26826349 -74554172 + MER83B-int LTR ERV1 2930 3232 -2714 1853 197 52 65 chr15 26826362 26826764 -74553757 + MER83B-int LTR ERV1 2886 3269 -1611 1883 138 0 31 chr15 26826764 26827083 -74553438 + AluSx SINE Alu 1 310 0 1853 197 52 65 chr15 26827083 26827217 -74553304 + MER83B-int LTR ERV1 3269 3403 -1477 1549 210 16 57 chr15 26827281 26827653 -74552868 + MLT1A1 LTR MaLR 1 357 -8 7272 134 33 12 chr15 26827770 26828611 -74551910 + Tigger1 DNA MER2_type 1 877 -1541 2297 125 0 3 chr15 26828611 26828923 -74551598 + AluSq SINE Alu 1 311 -2 7272 134 33 12 chr15 26828923 26829280 -74551241 + Tigger1 DNA MER2_type 877 1225 -1193 614 286 95 8 chr15 26829411 26829663 -74550858 - ERVL LTR ERVL -667 5097 4824 538 295 66 0 chr15 26829779 26829945 -74550576 - ERVL LTR ERVL -1089 4675 4499 315 260 0 0 chr15 26830641 26830714 -74549807 - L1M1 LINE L1 -4193 3372 3300 11055 204 34 20 chr15 26830771 26831127 -74549394 - L1PB2 LINE L1 -3 6148 5799 267 31 0 0 chr15 26831127 26831159 -74549362 + (TG)n Simple_repeat Simple_repeat 2 33 0 11055 204 34 20 chr15 26831159 26832273 -74548248 - L1PB2 LINE L1 -352 5799 4703 2200 142 39 25 chr15 26832273 26832632 -74547889 + THE1B LTR MaLR 1 364 0 11055 204 34 20 chr15 26832632 26832910 -74547611 - L1PB2 LINE L1 -1448 4703 4431 293 0 0 26 chr15 26832910 26832948 -74547573 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 11055 204 34 20 chr15 26832948 26833169 -74547352 - L1PB2 LINE L1 -1720 4431 4215 9252 58 3 2 chr15 26833169 26834237 -74546284 - MER11C LTR ERVK -2 1069 1 11055 204 34 20 chr15 26834237 26835783 -74544738 - L1PB2 LINE L1 -1936 4215 2552 340 285 10 67 chr15 26836271 26836464 -74544057 + L1ME4a LINE L1 5783 5964 -157 237 279 100 56 chr15 26836780 26837049 -74543472 + L1 LINE L1 4736 5016 -1130 516 225 196 35 chr15 26837453 26837603 -74542918 - AluJo SINE Alu -15 297 114 206 81 27 0 chr15 26837603 26837640 -74542881 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 516 225 196 35 chr15 26837640 26837662 -74542859 - AluJo SINE Alu -198 114 97 440 141 0 0 chr15 26837676 26837740 -74542781 - AluSp/q SINE Alu -36 267 204 3456 177 4 2 chr15 26837740 26838295 -74542226 + L1PA12 LINE L1 1030 1585 -5996 3391 148 44 19 chr15 26838293 26838923 -74541598 + L1PA12 LINE L1 2388 3033 -4541 * 243 286 14 0 chr15 26839509 26839579 -74540942 + CT-rich Low_complexity Low_complexity 2 72 0 2246 122 6 3 chr15 26840552 26840864 -74539657 - AluSq SINE Alu 0 313 1 299 267 20 10 chr15 26840999 26841100 -74539421 - MER94 DNA DNA -32 102 1 5265 126 37 16 chr15 26842633 26843468 -74537053 - L1PB2 LINE L1 -5251 895 9 2068 124 0 0 chr15 26843481 26843755 -74536766 - AluSx SINE Alu -15 297 24 1034 175 11 26 chr15 26843755 26843944 -74536577 - MLT1C LTR MaLR -281 186 1 385 249 12 89 chr15 26845033 26845202 -74535319 - LTR2 LTR ERV1 -293 156 1 316 138 17 0 chr15 26845536 26845594 -74534927 - MLT1E LTR MaLR -2 565 507 1523 205 51 32 chr15 26845594 26845964 -74534557 - MSTD LTR MaLR -19 377 1 1764 278 71 14 chr15 26845964 26846234 -74534287 - MLT1E LTR MaLR -56 537 284 2148 148 3 0 chr15 26846234 26846545 -74533976 - AluSp SINE Alu -1 312 1 1764 278 71 14 chr15 26846545 26846782 -74533739 - MLT1E LTR MaLR -309 284 1 1082 237 53 0 chr15 26846820 26847065 -74533456 - MIR SINE MIR -3 259 2 1918 159 37 67 chr15 26848184 26848586 -74531935 + MLT1B LTR MaLR 1 390 0 1443 180 38 52 chr15 26848916 26849260 -74531261 - MER44D DNA MER2_type 0 609 1 2303 89 10 0 chr15 26850102 26850394 -74530127 + AluSx SINE Alu 1 295 -17 242 186 0 0 chr15 26850719 26850762 -74529759 - tRNA-Phe-TTC tRNA tRNA -33 43 1 25 31 0 0 chr15 26851151 26851183 -74529338 + AT_rich Low_complexity Low_complexity 1 32 0 2280 87 13 0 chr15 26851190 26851488 -74529033 - AluY SINE Alu -7 304 3 21 36 0 0 chr15 26852292 26852320 -74528201 + AT_rich Low_complexity Low_complexity 1 28 0 5669 150 12 7 chr15 26852768 26853683 -74526838 - L1MA4 LINE L1 -9 6291 5382 189 74 0 0 chr15 26853683 26853710 -74526811 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2024 134 0 0 chr15 26853710 26853993 -74526528 - AluSx SINE Alu -29 283 1 5669 150 12 7 chr15 26853993 26854126 -74526395 - L1MA4 LINE L1 -917 5383 5237 1817 166 11 0 chr15 26854901 26855184 -74525337 + AluJo SINE Alu 1 286 -26 323 190 267 0 chr15 26855379 26855495 -74525026 + LTR40a LTR ERVL 1 147 -372 547 299 35 31 chr15 26855675 26855929 -74524592 + LTR40b LTR ERVL 203 457 -5 2257 101 3 0 chr15 26856038 26856335 -74524186 + AluSx SINE Alu 1 298 -14 428 253 102 49 chr15 26857986 26858180 -74522341 + MIR SINE MIR 15 216 -46 394 18 36 0 chr15 26858218 26858273 -74522248 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 25 51 0 0 chr15 26858374 26858413 -74522108 + AT_rich Low_complexity Low_complexity 1 39 0 959 189 0 0 chr15 26858706 26858865 -74521656 + FRAM SINE Alu 1 159 -17 2010 151 0 10 chr15 26858876 26859180 -74521341 + AluSx SINE Alu 9 309 -3 2175 130 0 3 chr15 26860364 26860663 -74519858 - AluJb SINE Alu -12 300 3 21 36 0 0 chr15 26861228 26861256 -74519265 + AT_rich Low_complexity Low_complexity 1 28 0 2385 94 3 0 chr15 26861361 26861669 -74518852 - AluSc SINE Alu 0 309 1 53 17 0 0 chr15 26861995 26862055 -74518466 + AT_rich Low_complexity Low_complexity 1 60 0 1207 97 0 0 chr15 26862056 26862221 -74518300 - L1PA13 LINE L1 -19 6144 5980 3082 71 23 2 chr15 26862670 26863105 -74517416 + L1P LINE L1 4006 4449 -1697 1555 81 0 5 chr15 26863094 26863316 -74517205 + L1P LINE L1 4710 4930 -1216 * 486 314 35 6 chr15 26864916 26865088 -74515433 + MIR SINE MIR 80 256 -6 2321 88 3 0 chr15 26865558 26865855 -74514666 + AluSp SINE Alu 1 298 -15 675 24 0 0 chr15 26865858 26865940 -74514581 + L1PA5 LINE L1 6072 6153 -1 26 0 0 0 chr15 26866033 26866059 -74514462 + AT_rich Low_complexity Low_complexity 1 26 0 891 265 49 73 chr15 26866066 26866519 -74514002 - L2 LINE L2 0 3313 2872 209 281 135 11 chr15 26867166 26867255 -74513266 + MIR3 SINE MIR 109 208 0 188 122 24 0 chr15 26867603 26867644 -74512877 + A-rich Low_complexity Low_complexity 6 47 0 24 0 0 0 chr15 26868159 26868183 -74512338 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr15 26868598 26868624 -74511897 + AT_rich Low_complexity Low_complexity 1 26 0 318 251 57 109 chr15 26868946 26869157 -74511364 - LTR41 LTR ERVL -564 209 10 207 326 174 0 chr15 26869201 26869299 -74511222 + L2 LINE L2 2233 2347 -967 26 0 0 0 chr15 26869382 26869408 -74511113 + AT_rich Low_complexity Low_complexity 1 26 0 664 263 103 22 chr15 26869701 26869933 -74510588 - MIR SINE MIR -7 255 5 3524 188 42 39 chr15 26869957 26870477 -74510044 + L1MB4 LINE L1 4415 4932 -1248 2587 185 9 0 chr15 26870477 26870936 -74509585 + MLT1C LTR MaLR 5 467 0 3524 188 42 39 chr15 26870936 26871728 -74508793 + L1MB4 LINE L1 4932 5720 -460 2106 120 3 3 chr15 26871728 26872027 -74508494 + AluSc SINE Alu 1 299 -10 3524 188 42 39 chr15 26872027 26872131 -74508390 + L1MB4 LINE L1 5720 5822 -358 2189 105 0 13 chr15 26872131 26872436 -74508085 + AluSc SINE Alu 1 301 -8 3524 188 42 39 chr15 26872436 26872773 -74507748 + L1MB4 LINE L1 5822 6174 -6 421 252 101 0 chr15 26873153 26873272 -74507249 - MIR SINE MIR 0 262 132 415 341 7 7 chr15 26873532 26873667 -74506854 + L2 LINE L2 3137 3271 -1 22 0 0 0 chr15 26874290 26874312 -74506209 + AT_rich Low_complexity Low_complexity 1 22 0 2271 99 3 0 chr15 26876291 26876583 -74503938 + AluSx SINE Alu 1 293 -19 3521 135 4 0 chr15 26877238 26877765 -74502756 - LTR26B LTR ERV1 -2 529 1 997 65 43 0 chr15 26878637 26878775 -74501746 - L1MA2 LINE L1 -5 6299 6156 1197 93 0 0 chr15 26879598 26879749 -74500772 + AluSq/x SINE Alu 1 151 -161 2688 97 11 3 chr15 26881616 26881988 -74498533 + THE1C LTR MaLR 1 375 0 2485 79 93 109 chr15 26881988 26882484 -74498037 + THE1C-int LTR MaLR 1 488 -1092 6753 179 86 20 chr15 26882585 26884024 -74496497 + MER52A LTR ERV1 223 1755 0 180 111 0 0 chr15 26884248 26884275 -74496246 + (GA)n Simple_repeat Simple_repeat 1 27 0 226 315 0 0 chr15 26884767 26884840 -74495681 + GA-rich Low_complexity Low_complexity 2 74 0 992 224 42 125 chr15 26885435 26886081 -74494440 - L1MC4 LINE L1 -744 7217 6626 646 308 119 18 chr15 26886231 26886725 -74493796 - L1M4 LINE L1 -3444 2702 2159 820 199 6 0 chr15 26887266 26887442 -74493079 - L1MB3 LINE L1 -197 5986 5810 579 266 10 3 chr15 26887561 26887704 -74492817 + MER45A DNA AcHobo 28 169 -9 609 242 25 80 chr15 26887755 26887861 -74492660 - L1MB3 LINE L1 -1393 4753 4643 2404 59 16 7 chr15 26887861 26888168 -74492353 - AluY SINE Alu -1 310 1 609 242 25 80 chr15 26888168 26888375 -74492146 - L1MB3 LINE L1 -1503 4643 4457 2670 192 58 12 chr15 26888429 26888679 -74491842 - L1MB2 LINE L1 -123 6048 5811 2280 141 88 8 chr15 26888679 26889075 -74491446 + MSTA LTR MaLR 1 428 0 2670 192 58 12 chr15 26889075 26889465 -74491056 - L1MB2 LINE L1 -360 5811 5379 2715 191 12 20 chr15 26889466 26890014 -74490507 - MLT2B3 LTR ERVL -19 514 1 1544 228 24 2 chr15 26890014 26890431 -74490090 - L1MB2 LINE L1 -782 5364 4939 2612 72 8 3 chr15 26890437 26890800 -74489721 + THE1-int LTR MaLR 61 425 -1155 2339 98 0 0 chr15 26890801 26891098 -74489423 - AluSq SINE Alu -16 297 1 5249 204 39 43 chr15 26891179 26891788 -74488733 - L1MB2 LINE L1 -1265 4881 4271 270 0 0 0 chr15 26891788 26891818 -74488703 + (TG)n Simple_repeat Simple_repeat 1 30 0 5249 204 39 43 chr15 26891818 26892731 -74487790 - L1MB2 LINE L1 -1875 4271 3365 1166 241 31 3 chr15 26892731 26893054 -74487467 - L1MB2 LINE L1 -3208 2938 2607 2176 121 0 0 chr15 26893055 26893344 -74487177 - AluSq SINE Alu -22 291 3 236 300 28 67 chr15 26893895 26894075 -74486446 - HAL1b LINE L1 -825 523 351 263 184 0 36 chr15 26894079 26894146 -74486375 + L1MC/D LINE L1 5541 5598 -644 2222 108 0 3 chr15 26896291 26896597 -74483924 + AluSx SINE Alu 1 305 -7 319 234 86 78 chr15 26899515 26899771 -74480750 - Charlie7 DNA MER1_type -144 2468 2211 569 290 30 21 chr15 26901212 26901537 -74478984 + MLT1I LTR MaLR 40 400 -9 2242 88 0 3 chr15 26901838 26902146 -74478375 - AluSq SINE Alu 0 307 1 180 0 0 0 chr15 26902308 26902328 -74478193 + (TTTTTA)n Simple_repeat Simple_repeat 6 25 0 * 225 309 55 55 chr15 26902323 26902433 -74478088 + L2 LINE L2 3204 3313 0 446 324 56 42 chr15 26902444 26902660 -74477861 + L3 LINE CR1 909 1127 -450 270 402 49 0 chr15 26903098 26903282 -74477239 - MIR SINE MIR -50 212 20 * 381 302 225 26 chr15 26903278 26903589 -74476932 + L3 LINE CR1 1204 1576 -1 1701 185 6 10 chr15 26904447 26904760 -74475761 + AluJo SINE Alu 1 312 0 3424 148 50 62 chr15 26904903 26905664 -74474857 + HUERS-P1 LTR ERV1 4449 5200 -746 2284 135 120 5 chr15 26905665 26906049 -74474472 - MSTA LTR MaLR 0 428 1 7388 186 126 8 chr15 26906049 26907526 -74472995 - MSTA-int LTR MaLR 0 1651 1 2362 132 62 34 chr15 26907526 26907942 -74472579 - MSTA LTR MaLR 0 428 1 1448 190 45 23 chr15 26907942 26908006 -74472515 + HUERS-P1 LTR ERV1 5430 5491 -840 2627 103 13 19 chr15 26908006 26908383 -74472138 + THE1C LTR MaLR 1 375 0 1448 190 45 23 chr15 26908383 26908671 -74471850 + HUERS-P1 LTR ERV1 5491 5790 -541 1280 167 140 39 chr15 26908683 26909018 -74471503 + HUERS-P1 LTR ERV1 5906 6274 -57 764 272 22 0 chr15 26909103 26909287 -74471234 + HUERS-P1 LTR ERV1 5950 6137 -126 2779 205 24 56 chr15 26909372 26910069 -74470452 + LTR8 LTR ERV1 16 690 -1 2207 99 0 13 chr15 26913095 26913399 -74467122 - AluSq SINE Alu -13 300 1 311 295 0 36 chr15 26913494 26913606 -74466915 - L1MC5 LINE L1 -145 7816 7709 344 254 30 52 chr15 26914218 26914352 -74466169 - HAL1 LINE L1 -122 2385 2255 690 291 225 44 chr15 26914622 26914739 -74465782 - HAL1 LINE L1 -698 1809 1715 1884 115 26 36 chr15 26914739 26914986 -74465535 - L1PA15 LINE L1 0 6165 5920 2224 76 7 0 chr15 26914986 26915275 -74465246 + AluSx SINE Alu 1 291 -21 1884 115 26 36 chr15 26915275 26915332 -74465189 - L1PA15 LINE L1 -245 5920 5864 690 291 225 44 chr15 26915332 26916742 -74463779 - HAL1 LINE L1 -792 1715 5 1131 181 84 50 chr15 26917033 26917354 -74463167 - L1MC/D LINE L1 -2199 5586 5255 202 268 0 0 chr15 26920613 26920654 -74459867 + polypyrimidine Low_complexity Low_complexity 3 43 0 1325 281 144 29 chr15 26921530 26922217 -74458304 - L1MC4a LINE L1 -743 5403 5092 2145 88 3 0 chr15 26922217 26922500 -74458021 - AluSx SINE Alu -28 284 1 1325 281 144 29 chr15 26922500 26922647 -74457874 - L1MC4a LINE L1 -1054 5092 4963 216 292 90 11 chr15 26923413 26923502 -74457019 + MIR3 SINE MIR 59 154 -54 650 265 132 0 chr15 26925514 26925703 -74454818 + Charlie1 DNA MER1_type 1 214 -2547 230 278 14 14 chr15 26925720 26925792 -74454729 + Charlie1 DNA MER1_type 2633 2704 -57 704 220 81 47 chr15 26926555 26926928 -74453593 - MLT1C LTR MaLR 0 467 5 367 229 31 0 chr15 26927029 26927125 -74453396 + MER103 DNA DNA 59 157 -9 1586 116 13 0 chr15 26927287 26927512 -74453009 + AluSq SINE Alu 1 228 -85 357 24 0 0 chr15 26927535 26927577 -74452944 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 346 229 106 39 chr15 26927622 26927801 -74452720 - HAL1 LINE L1 -95 2412 2222 259 290 0 0 chr15 26928082 26928151 -74452370 + MIR SINE MIR 159 227 -35 338 254 12 83 chr15 26928507 26928676 -74451845 - HAL1 LINE L1 -949 1558 1402 2156 89 3 10 chr15 26929526 26929818 -74450703 - AluSg SINE Alu -18 292 3 340 273 6 43 chr15 26930153 26930314 -74450207 + L1ME4a LINE L1 5967 6121 0 1617 182 20 37 chr15 26932455 26932807 -74447714 + MLT1A1 LTR MaLR 3 348 -17 1001 178 0 0 chr15 26939849 26940012 -74440509 + FRAM SINE Alu 1 163 -3 27 0 0 0 chr15 26940419 26940446 -74440075 + GC_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr15 26940633 26940660 -74439861 + GC_rich Low_complexity Low_complexity 1 27 0 37 76 0 0 chr15 26940850 26940929 -74439592 + GC_rich Low_complexity Low_complexity 1 79 0 36 106 0 0 chr15 26941339 26941480 -74439041 + GC_rich Low_complexity Low_complexity 1 141 0 30 0 0 0 chr15 26941778 26941808 -74438713 + GC_rich Low_complexity Low_complexity 1 30 0 192 179 0 0 chr15 26942035 26942074 -74438447 + (CA)n Simple_repeat Simple_repeat 1 39 0 1486 153 102 11 chr15 26942515 26942789 -74437732 - AluJo SINE Alu -12 300 2 398 301 37 34 chr15 26944887 26945005 -74435516 - HAL1 LINE L1 -1332 1175 1059 2224 116 0 0 chr15 26945005 26945308 -74435213 - AluSx SINE Alu -9 303 1 398 301 37 34 chr15 26945308 26945541 -74434980 - HAL1 LINE L1 -1448 1059 823 749 246 107 85 chr15 26946362 26946388 -74434133 + MLT1J LTR MaLR 1 25 -486 2201 225 86 34 chr15 26946388 26946925 -74433596 - MLT1F1 LTR MaLR -2 565 1 749 246 107 85 chr15 26946925 26947308 -74433213 + MLT1J LTR MaLR 25 419 -92 2379 73 10 10 chr15 26947392 26947705 -74432816 + AluSq SINE Alu 1 313 0 2107 99 0 0 chr15 26949001 26949303 -74431218 + AluSg SINE Alu 1 302 0 365 304 99 48 chr15 26949310 26949583 -74430938 - L1MC4 LINE L1 -31 8011 7725 2240 108 0 0 chr15 26949755 26950060 -74430461 - AluSx SINE Alu -7 305 1 880 193 173 85 chr15 26950598 26950725 -74429796 + MLT1A2 LTR MaLR 3 117 -257 2089 122 0 0 chr15 26950725 26951019 -74429502 - AluSx SINE Alu -18 294 1 880 193 173 85 chr15 26951019 26951233 -74429288 + MLT1A2 LTR MaLR 117 374 0 254 281 45 34 chr15 26952507 26952596 -74427925 + LTR33 LTR ERVL 91 180 -341 310 262 158 0 chr15 26953413 26953527 -74426994 + MIR SINE MIR 20 151 -63 416 347 43 14 chr15 26954584 26954810 -74425711 + MIR SINE MIR 20 250 -12 794 257 57 21 chr15 26954818 26955098 -74425423 + L1MC4a LINE L1 5567 5856 -1952 286 23 47 0 chr15 26955281 26955324 -74425197 + (TC)n Simple_repeat Simple_repeat 2 46 0 396 0 0 0 chr15 26955324 26955368 -74425153 + (CA)n Simple_repeat Simple_repeat 1 44 0 195 162 0 0 chr15 26956618 26956655 -74423866 + (CA)n Simple_repeat Simple_repeat 2 38 0 1840 168 44 18 chr15 26957130 26957469 -74423052 + MER7A DNA MER2_type 1 346 0 480 35 0 0 chr15 26959468 26959526 -74420995 + (CA)n Simple_repeat Simple_repeat 1 58 0 2612 80 0 0 chr15 26960220 26960533 -74419988 + AluSq SINE Alu 1 313 0 686 282 116 28 chr15 26960924 26961311 -74419210 + L1MC4 LINE L1 7340 7760 -282 180 286 41 0 chr15 26961492 26961541 -74418980 - L2 LINE L2 -2912 402 352 616 288 10 25 chr15 26961637 26961835 -74418686 + MIR SINE MIR 39 233 -29 280 292 14 74 chr15 26962782 26962998 -74417523 + L1MC/D LINE L1 5624 5826 -1982 198 0 0 0 chr15 26966402 26966424 -74414097 + (GGCTG)n Simple_repeat Simple_repeat 3 24 0 30 27 0 0 chr15 26966665 26966702 -74413819 + GC_rich Low_complexity Low_complexity 1 37 0 3271 268 144 19 chr15 26969120 26970767 -74409754 + HAL1 LINE L1 84 1937 -570 282 239 266 0 chr15 26970803 26970916 -74409605 - MLT1I LTR MaLR -71 338 196 232 94 0 0 chr15 26971448 26971480 -74409041 - MLT1A1 LTR MaLR -64 301 270 837 240 151 43 chr15 26971861 26972137 -74408384 - MLT1I LTR MaLR 0 409 86 1961 164 5 67 chr15 26972137 26972292 -74408229 + MLT1A1 LTR MaLR 1 164 -201 2192 109 20 10 chr15 26972292 26972594 -74407927 + AluSx SINE Alu 1 305 -7 1961 164 5 67 chr15 26972594 26972827 -74407694 + MLT1A1 LTR MaLR 164 365 0 837 240 151 43 chr15 26972827 26972900 -74407621 - MLT1I LTR MaLR -323 86 22 740 290 111 39 chr15 26972935 26973272 -74407249 + HAL1 LINE L1 1957 2345 -162 2317 196 88 35 chr15 26973272 26973864 -74406657 + MLT1E3 LTR MaLR 1 623 -1 740 290 111 39 chr15 26973864 26974040 -74406481 + HAL1 LINE L1 2345 2507 0 1927 112 98 0 chr15 26974125 26974402 -74406119 - AluSg SINE Alu -6 304 1 320 322 96 10 chr15 26974402 26974610 -74405911 + MLT1J2 LTR MaLR 73 298 -152 200 313 160 0 chr15 26975788 26975919 -74404602 - MIR SINE MIR -83 179 28 2144 111 0 36 chr15 26977379 26977685 -74402836 + AluSx SINE Alu 3 297 -15 1005 209 171 72 chr15 26977712 26978181 -74402340 + MLT1G LTR MaLR 76 590 0 2437 89 0 13 chr15 26978199 26978513 -74402008 - AluSg SINE Alu 0 310 1 635 132 88 29 chr15 26978652 26978788 -74401733 + MLT1E3 LTR MaLR 1 144 -480 1035 246 68 14 chr15 26979405 26979698 -74400823 - MSTC LTR MaLR -119 309 1 232 321 86 18 chr15 26980038 26980145 -74400376 + L1M4 LINE L1 2115 2213 -3933 2094 126 13 0 chr15 26980145 26980446 -74400075 - AluSx SINE Alu -7 305 1 232 321 86 18 chr15 26980446 26980618 -74399903 + L1M4 LINE L1 2213 2413 -3733 2511 76 0 0 chr15 26980639 26980940 -74399581 + AluY SINE Alu 1 301 -10 189 0 0 0 chr15 26982333 26982354 -74398167 + (A)n Simple_repeat Simple_repeat 1 21 0 2338 99 0 29 chr15 26986166 26986480 -74394041 + AluSg SINE Alu 1 305 -5 367 239 72 22 chr15 26986640 26986820 -74393701 + MER115 DNA AcHobo 58 246 -447 246 32 0 0 chr15 26986887 26986918 -74393603 + (GGCTG)n Simple_repeat Simple_repeat 2 32 0 315 259 168 5 chr15 26986926 26987111 -74393410 + MER115 DNA AcHobo 401 615 -78 3134 212 32 30 chr15 26987140 26987919 -74392602 + MER21B LTR ERV1 5 785 -78 1196 241 66 6 chr15 26989170 26989489 -74391032 + MER46C DNA MER2_type 1 338 0 837 182 6 77 chr15 26990545 26990726 -74389795 - FRAM SINE Alu -5 171 4 676 266 61 18 chr15 26990817 26991095 -74389426 + L1MEc LINE L1 35 324 -6072 2132 139 0 16 chr15 26991112 26991429 -74389092 + AluSx SINE Alu 1 312 0 1590 112 21 150 chr15 26991641 26992015 -74388506 + MER7A DNA MER2_type 1 324 -22 745 277 36 29 chr15 26992080 26992495 -74388026 + L1MEc LINE L1 660 1077 -5319 240 323 24 32 chr15 26992500 26992624 -74387897 + L1MDb LINE L1 7 129 -6280 297 264 11 11 chr15 26992734 26992821 -74387700 + L1MDb LINE L1 116 202 -6204 5657 253 50 17 chr15 26993339 26994010 -74386511 + L1MDb LINE L1 780 1427 -4979 2122 153 0 0 chr15 26994010 26994318 -74386203 + AluSx SINE Alu 1 308 -4 5657 253 50 17 chr15 26994318 26994363 -74386158 + L1MDb LINE L1 1427 1469 -4937 934 110 6 28 chr15 26994363 26994545 -74385976 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 5657 253 50 17 chr15 26994545 26995237 -74385284 + L1MDb LINE L1 1469 2137 -4269 2166 132 0 0 chr15 26995237 26995532 -74384989 + AluSx SINE Alu 1 295 -17 5657 253 50 17 chr15 26995532 26995590 -74384931 + L1MDb LINE L1 2137 2192 -4214 333 0 0 0 chr15 26995590 26995627 -74384894 + (TA)n Simple_repeat Simple_repeat 1 37 0 5657 253 50 17 chr15 26995627 26997025 -74383496 + L1MDb LINE L1 2192 3735 -2671 2261 103 3 0 chr15 26997025 26997316 -74383205 - AluSg SINE Alu -18 292 1 5657 253 50 17 chr15 26997316 26998240 -74382281 + L1MDb LINE L1 3735 4627 -1779 321 211 11 11 chr15 26998234 26998329 -74382192 + L1MC/D LINE L1 5350 5444 -2364 * 1463 218 20 59 chr15 26998609 26998826 -74381695 + L1MDb LINE L1 4650 4874 -1532 1808 85 48 0 chr15 26998826 26999097 -74381424 + L1MA3 LINE L1 6020 6303 -2 1463 218 20 59 chr15 26999097 26999369 -74381152 + L1MDb LINE L1 4874 5120 -1286 4193 183 47 32 chr15 26999387 27000372 -74380149 - L1MB7 LINE L1 -23 6161 5154 2215 103 7 0 chr15 27000372 27000691 -74379830 + AluSp SINE Alu 1 313 0 4193 183 47 32 chr15 27000691 27001242 -74379279 - L1MB7 LINE L1 -1030 5154 4613 427 315 57 38 chr15 27001287 27001706 -74378815 + L1MEc LINE L1 1385 1811 -4910 5276 144 38 24 chr15 27001707 27002681 -74377840 + L1MC1 LINE L1 5346 6333 0 226 200 148 35 chr15 27002676 27002791 -74377730 + L1MEc LINE L1 1751 1878 -4662 * 736 256 76 51 chr15 27002815 27003209 -74377312 + L1MEc LINE L1 2170 2573 -4148 486 304 58 10 chr15 27003179 27003492 -74377029 + L1MEc LINE L1 2504 2831 -3709 * 1282 212 44 80 chr15 27003497 27003663 -74376858 + MLT1B LTR MaLR 1 171 -219 2178 140 0 0 chr15 27003663 27003974 -74376547 + AluSx SINE Alu 1 301 -11 1282 212 44 80 chr15 27003974 27004183 -74376338 + MLT1B LTR MaLR 171 372 -18 1870 227 118 2 chr15 27004199 27004723 -74375798 + L1MEc LINE L1 2838 3422 -3118 288 111 0 0 chr15 27004893 27004938 -74375583 + (TG)n Simple_repeat Simple_repeat 2 46 0 329 212 71 0 chr15 27006366 27006451 -74374070 - MER45C DNA AcHobo -145 808 718 487 198 10 0 chr15 27006555 27006651 -74373870 - MER45C DNA AcHobo -776 177 81 456 323 69 44 chr15 27007408 27007777 -74372744 + HERV16 LTR ERVL 492 866 -4130 1705 175 66 0 chr15 27007777 27008097 -74372424 - L1MB3 LINE L1 -7 6176 5836 456 323 69 44 chr15 27008097 27008274 -74372247 + HERV16 LTR ERVL 866 1037 -3959 251 286 36 12 chr15 27008329 27008413 -74372108 + HERV16 LTR ERVL 1007 1092 -3904 2062 326 125 10 chr15 27008575 27009691 -74370830 + HERV16 LTR ERVL 1375 2658 -2430 2286 67 13 25 chr15 27011321 27011636 -74368885 - AluY SINE Alu 0 311 1 350 382 24 14 chr15 27012123 27012330 -74368191 + MIR SINE MIR 6 214 -48 541 196 250 7 chr15 27012424 27012572 -74367949 - LTR2 LTR ERV1 0 449 266 296 312 6 81 chr15 27012568 27012741 -74367780 - LTR2 LTR ERV1 -289 160 1 * 185 253 96 72 chr15 27013565 27013648 -74366873 - MIR SINE MIR -72 190 106 329 266 82 53 chr15 27014665 27014850 -74365671 + LTR33 LTR ERVL 1 166 -355 408 257 18 9 chr15 27015049 27015162 -74365359 + LTR33A LTR ERVL 407 520 -3 390 268 63 39 chr15 27015835 27016020 -74364501 - MLT1G LTR MaLR -138 417 218 447 186 23 0 chr15 27016325 27016403 -74364118 + MER67A LTR ERV1 1 80 -463 1086 235 70 60 chr15 27016403 27016862 -74363659 + MER67B LTR ERV1 1 341 -331 1728 143 17 7 chr15 27016862 27017156 -74363365 + AluY SINE Alu 1 297 -14 1086 235 70 60 chr15 27017156 27017220 -74363301 + MER67B LTR ERV1 341 403 -269 447 255 72 18 chr15 27017230 27017434 -74363087 + MER67A LTR ERV1 289 541 -2 672 205 0 0 chr15 27018007 27018173 -74362348 + (TG)n Simple_repeat Simple_repeat 2 167 0 199 339 0 0 chr15 27021605 27021664 -74358857 - L2 LINE L2 -9 3263 3205 330 67 0 0 chr15 27023121 27023166 -74357355 + (TG)n Simple_repeat Simple_repeat 2 46 0 195 295 85 31 chr15 27023771 27023900 -74356621 - MIR SINE MIR -56 152 17 367 282 150 29 chr15 27024200 27024473 -74356048 + ERVL LTR ERVL 5038 5343 -421 1531 193 7 10 chr15 27024495 27024791 -74355730 + AluSx SINE Alu 1 295 -17 1786 244 89 21 chr15 27024791 27025195 -74355326 - L1ME3A LINE L1 -40 6130 5755 2060 105 3 59 chr15 27025195 27025518 -74355003 - AluSg SINE Alu -5 305 1 1786 244 89 21 chr15 27025518 27025553 -74354968 - L1ME3A LINE L1 -415 5755 5724 297 0 0 0 chr15 27025553 27025586 -74354935 + (CA)n Simple_repeat Simple_repeat 2 34 0 1786 244 89 21 chr15 27025586 27025796 -74354725 - L1ME3A LINE L1 -446 5724 5436 204 40 0 0 chr15 27025800 27025825 -74354696 + (TCCCC)n Simple_repeat Simple_repeat 4 28 0 316 323 120 32 chr15 27025881 27026222 -74354299 - L1M4c LINE L1 -1205 1538 937 3812 201 11 62 chr15 27026273 27026473 -74354048 - L1MB8 LINE L1 -45 6133 5925 1594 164 20 30 chr15 27026473 27026777 -74353744 - AluJb SINE Alu -11 301 1 3812 201 11 62 chr15 27026777 27027638 -74352883 - L1MB8 LINE L1 -253 5925 5122 2348 88 3 0 chr15 27027790 27028098 -74352423 - AluY SINE Alu -2 309 1 238 321 101 0 chr15 27028307 27028416 -74352105 - LTR33A LTR ERVL -16 507 388 2132 192 11 8 chr15 27028464 27028828 -74351693 - MLT1A1 LTR MaLR 0 365 1 244 231 39 108 chr15 27029043 27029173 -74351348 - LTR33A LTR ERVL -365 158 38 1740 133 0 4 chr15 27029528 27029791 -74350730 + AluSx SINE Alu 12 273 -39 279 284 88 14 chr15 27030077 27030225 -74350296 + MER103 DNA DNA 1 159 -7 1528 212 164 15 chr15 27031044 27031441 -74349080 - MLT1F1 LTR MaLR -2 565 110 31 26 0 0 chr15 27031761 27031799 -74348722 + AT_rich Low_complexity Low_complexity 1 38 0 668 148 40 0 chr15 27032036 27032137 -74348384 + FLAM_C SINE Alu 7 111 -32 2040 141 10 0 chr15 27032162 27032468 -74348053 + AluSq SINE Alu 3 311 -2 280 315 36 18 chr15 27032811 27032922 -74347599 - L2 LINE L2 0 3313 3201 630 152 128 0 chr15 27032991 27033116 -74347405 - MLT1F1 LTR MaLR -426 141 1 244 163 105 13 chr15 27033348 27033441 -74347080 + MIR SINE MIR 102 207 -55 1674 62 0 5 chr15 27034844 27035053 -74345468 - L1PA5 LINE L1 0 6154 5947 324 339 17 40 chr15 27035512 27035689 -74344832 + MIR SINE MIR 21 193 -69 1831 94 4 0 chr15 27035788 27036043 -74344478 + AluSx SINE Alu 57 312 0 928 112 0 0 chr15 27037540 27037665 -74342856 - AluSq/x SINE Alu -188 125 1 189 306 16 0 chr15 27037794 27037856 -74342665 + MIR3 SINE MIR 122 184 -24 2180 160 28 21 chr15 27038640 27039027 -74341494 + MLT1B LTR MaLR 1 390 0 381 328 73 35 chr15 27040308 27040540 -74339981 - HERV16 LTR ERVL -4211 785 545 801 338 21 68 chr15 27040840 27041325 -74339196 + HERV16 LTR ERVL 1110 1571 -3425 1024 173 26 30 chr15 27041362 27041654 -74338867 + L1MB7 LINE L1 5726 6148 -36 1646 254 98 27 chr15 27041679 27042202 -74338319 + HERV16 LTR ERVL 1712 2271 -2725 775 144 30 30 chr15 27042204 27042319 -74338202 + AluJo/FLAM SINE Alu 1 118 -184 1943 152 0 13 chr15 27042319 27042454 -74338067 + AluJb SINE Alu 1 136 -176 2211 116 3 0 chr15 27042454 27042764 -74337757 + AluSp SINE Alu 2 312 -1 1943 152 0 13 chr15 27042764 27042943 -74337578 + AluJb SINE Alu 136 311 -1 775 144 30 30 chr15 27042943 27042959 -74337562 + AluJo/FLAM SINE Alu 117 132 -170 21 57 0 0 chr15 27042977 27043012 -74337509 + AT_rich Low_complexity Low_complexity 1 35 0 1811 318 26 46 chr15 27043029 27043918 -74336603 + HERV16 LTR ERVL 2309 3091 -1905 367 331 20 67 chr15 27043940 27044194 -74336327 + HERV16 LTR ERVL 3595 3836 -1928 216 0 0 0 chr15 27044392 27044416 -74336105 + (A)n Simple_repeat Simple_repeat 1 24 0 404 318 47 25 chr15 27044421 27044639 -74335882 - L1MEc LINE L1 -3927 2482 2237 2714 142 49 0 chr15 27044860 27045268 -74335253 + MSTC LTR MaLR 1 428 0 378 347 140 0 chr15 27045291 27045484 -74335037 - L1MEc LINE L1 -4579 1984 1765 5409 110 10 22 chr15 27045808 27046368 -74334153 + L1MA5A LINE L1 5489 6037 -260 2058 121 3 10 chr15 27046368 27046673 -74333848 + AluSx SINE Alu 1 303 -9 5409 110 10 22 chr15 27046673 27046931 -74333590 + L1MA5A LINE L1 6037 6297 0 21 57 0 0 chr15 27046931 27046966 -74333555 + AT_rich Low_complexity Low_complexity 1 35 0 361 263 11 21 chr15 27047563 27047658 -74332863 + MER91A DNA MER1_type 1 94 -102 303 261 34 11 chr15 27048795 27048883 -74331638 + L2 LINE L2 3134 3223 -49 199 289 24 48 chr15 27049005 27049088 -74331433 + MIR SINE MIR 89 169 -93 1771 171 0 7 chr15 27049191 27049489 -74331032 + AluJb SINE Alu 1 296 -16 1396 227 98 102 chr15 27049695 27050233 -74330288 + MLT1F LTR MaLR 7 542 0 733 273 131 41 chr15 27051006 27051588 -74328933 - HAL1 LINE L1 0 2507 1874 2200 316 86 31 chr15 27051599 27052353 -74328168 - HAL1 LINE L1 -694 1813 955 2077 92 4 0 chr15 27052353 27052626 -74327895 - AluSx SINE Alu -38 274 1 2200 316 86 31 chr15 27052626 27053175 -74327346 - HAL1 LINE L1 -1552 955 438 329 276 0 0 chr15 27053420 27053496 -74327025 + MIR SINE MIR 119 194 -68 2476 86 0 0 chr15 27054399 27054703 -74325818 + AluSc SINE Alu 1 304 -5 1995 112 0 14 chr15 27054710 27054988 -74325533 + AluSx SINE Alu 39 312 0 2188 115 13 16 chr15 27055721 27056033 -74324488 + AluSx SINE Alu 1 311 -1 725 191 26 32 chr15 27056123 27056433 -74324088 - MLT1A1 LTR MaLR -1 364 1 2091 115 6 53 chr15 27056614 27056935 -74323586 - AluSq SINE Alu -7 306 1 362 265 66 10 chr15 27057182 27057378 -74323143 - L1MC/D LINE L1 -2322 5486 5280 414 0 0 0 chr15 27057669 27057715 -74322806 + (TG)n Simple_repeat Simple_repeat 2 47 0 1894 167 7 0 chr15 27057715 27057997 -74322524 - AluSx SINE Alu -28 284 1 1185 129 4 117 chr15 27058231 27058495 -74322026 + LTR12 LTR ERV1 1 234 -480 275 149 0 0 chr15 27058552 27058599 -74321922 + LTR12 LTR ERV1 228 274 -440 233 274 0 0 chr15 27058629 27058702 -74321819 + LTR30 LTR ERV1 552 624 -98 558 217 58 0 chr15 27058702 27058822 -74321699 + LTR12 LTR ERV1 359 485 -229 1955 117 11 3 chr15 27059233 27059516 -74321005 + AluSg SINE Alu 15 299 -11 3960 83 18 2 chr15 27059611 27060156 -74320365 - MER41A LTR ERV1 0 554 1 355 206 29 0 chr15 27061623 27061691 -74318830 - MER8 DNA MER2_type 0 239 170 * 2210 143 88 7 chr15 27061674 27062092 -74318429 + Tigger2 DNA MER2_type 2267 2718 0 568 205 93 12 chr15 27062723 27062884 -74317637 - Charlie1b DNA MER1_type -24 499 326 938 82 16 0 chr15 27062893 27063015 -74317506 + AluSp SINE Alu 2 125 -188 277 114 0 0 chr15 27063198 27063242 -74317279 - MADE1 DNA Mariner -36 44 1 214 239 0 0 chr15 27063268 27063314 -74317207 - L2 LINE L2 -13 3300 3255 1240 279 42 18 chr15 27063581 27064015 -74316506 - L1ME1 LINE L1 -5 6161 5718 640 211 35 99 chr15 27064564 27064796 -74315725 - Charlie1b DNA MER1_type -305 218 2 403 291 117 45 chr15 27064806 27064985 -74315536 + HAL1 LINE L1 818 1009 -1498 * 467 289 179 7 chr15 27064955 27065228 -74315293 + L1MC/D LINE L1 4240 4559 -1587 2063 155 0 15 chr15 27065330 27065672 -74314849 - MER1B DNA MER1_type 0 337 1 354 312 65 13 chr15 27065679 27065833 -74314688 + L1MC/D LINE L1 5173 5334 -812 225 0 171 0 chr15 27065962 27065997 -74314524 - MLT2D LTR ERVL 0 464 424 293 264 24 24 chr15 27066000 27066125 -74314396 + (CATATA)n Simple_repeat Simple_repeat 2 126 0 1642 196 32 51 chr15 27066160 27066440 -74314081 - MLT2D LTR ERVL -45 369 85 2082 105 22 0 chr15 27066440 27066707 -74313814 + AluSx SINE Alu 3 275 -37 204 40 0 0 chr15 27066710 27066735 -74313786 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1642 196 32 51 chr15 27066735 27066823 -74313698 - MLT2D LTR ERVL -331 83 4 279 272 99 27 chr15 27066961 27067127 -74313394 - MLT1J1 LTR MaLR -279 167 31 678 167 9 0 chr15 27067138 27067246 -74313275 - FLAM_C SINE Alu -20 123 15 272 178 56 56 chr15 27067265 27067355 -74313166 + L1MC/D LINE L1 5393 5482 -2326 235 250 16 0 chr15 27067634 27067698 -74312823 + MER115 DNA AcHobo 180 244 -449 2312 103 7 0 chr15 27067875 27068177 -74312344 + AluSg SINE Alu 1 304 -6 720 276 75 13 chr15 27068294 27068533 -74311988 + MIR SINE MIR 9 262 0 329 328 0 17 chr15 27069267 27069383 -74311138 + C-rich Low_complexity Low_complexity 5 118 0 424 117 0 72 chr15 27069386 27069497 -74311024 + (CCCCCT)n Simple_repeat Simple_repeat 6 108 0 22 0 0 0 chr15 27069882 27069904 -74310617 + GC_rich Low_complexity Low_complexity 1 22 0 2483 80 0 0 chr15 27071460 27071762 -74308759 - AluY SINE Alu -9 302 1 2301 92 7 0 chr15 27071909 27072204 -74308317 - AluSp SINE Alu -16 297 1 255 339 31 63 chr15 27073121 27073248 -74307273 + MIR3 SINE MIR 15 137 -71 1788 191 0 6 chr15 27073302 27073778 -74306743 - AluJb SINE Alu 0 474 1 464 230 34 39 chr15 27073828 27074006 -74306515 - L1MC5 LINE L1 -70 7891 7715 929 255 97 47 chr15 27074023 27074404 -74306117 - MLT1H LTR MaLR -43 506 107 1468 197 60 161 chr15 27074509 27074741 -74305780 - L1MC5 LINE L1 -262 7699 7445 2018 159 0 3 chr15 27074741 27075043 -74305478 - AluSx SINE Alu -9 303 3 1468 197 60 161 chr15 27075043 27075358 -74305163 - L1MC5 LINE L1 -516 7445 7100 2454 97 3 0 chr15 27075358 27075667 -74304854 - AluSx SINE Alu -2 310 1 1468 197 60 161 chr15 27075667 27076292 -74304229 - L1MC5 LINE L1 -861 7100 6645 237 244 77 51 chr15 27076568 27076724 -74303797 - L1MC4a LINE L1 -1614 6194 6035 2419 78 10 0 chr15 27076963 27077256 -74303265 - AluSx SINE Alu -14 298 3 1305 174 154 48 chr15 27077279 27077331 -74303190 - MSTD LTR MaLR -2 394 349 2111 133 3 7 chr15 27077331 27077631 -74302890 - AluSx SINE Alu -13 299 1 1305 174 154 48 chr15 27077631 27077934 -74302587 - MSTD LTR MaLR -47 349 1 1079 227 61 14 chr15 27079417 27079761 -74300760 - MER69 DNA AcHobo -1 2525 2166 866 217 28 0 chr15 27079761 27079941 -74300580 - MER58A DNA MER1_type 0 224 40 786 194 47 56 chr15 27079987 27080072 -74300449 - MER69 DNA AcHobo -381 2145 2061 2456 81 0 0 chr15 27080072 27080369 -74300152 - AluY SINE Alu -14 297 1 786 194 47 56 chr15 27080369 27080515 -74300006 - MER69 DNA AcHobo -465 2061 1916 * 800 266 56 0 chr15 27080511 27080725 -74299796 - MER69 DNA AcHobo -1591 935 710 2156 178 116 65 chr15 27081341 27081868 -74298653 + MLT2B3 LTR ERVL 1 554 0 468 286 86 45 chr15 27083411 27083638 -74296883 + MIR SINE MIR 17 261 -1 357 24 0 0 chr15 27084974 27085016 -74295505 + (CA)n Simple_repeat Simple_repeat 2 43 0 1995 125 12 64 chr15 27085889 27086218 -74294303 + AluSx SINE Alu 1 312 0 304 330 124 29 chr15 27086243 27086354 -74294167 + HAL1 LINE L1 880 979 -1528 1282 164 122 73 chr15 27086354 27086781 -74293740 - LTR7 LTR ERV1 -2 448 1 304 330 124 29 chr15 27086781 27087053 -74293468 + HAL1 LINE L1 979 1302 -1205 217 204 37 0 chr15 27087469 27087523 -74292998 + GA-rich Low_complexity Low_complexity 4 59 0 266 328 59 8 chr15 27087629 27087748 -74292773 - MIR SINE MIR -131 131 7 2556 77 0 0 chr15 27088290 27088601 -74291920 + AluY SINE Alu 1 311 0 554 380 123 0 chr15 27088603 27088935 -74291586 + L1MC4a LINE L1 4143 4515 -1631 2476 71 7 7 chr15 27088954 27089263 -74291258 - AluSc SINE Alu 0 309 1 312 285 166 40 chr15 27089285 27089436 -74291085 + L1MC4a LINE L1 5550 5719 -402 430 239 29 116 chr15 27089479 27089756 -74290765 + L1MC4a LINE L1 5707 5963 -158 2130 96 36 0 chr15 27089773 27090054 -74290467 - AluSx SINE Alu -17 295 5 29 70 0 0 chr15 27090204 27090261 -74290260 + AT_rich Low_complexity Low_complexity 1 57 0 645 178 8 0 chr15 27090261 27090379 -74290142 - FLAM_C SINE Alu -14 119 1 852 268 105 32 chr15 27090457 27090983 -74289538 - HAL1 LINE L1 -85 2422 1859 2467 71 10 0 chr15 27091326 27091773 -74288748 + AluY SINE Alu 1 450 0 287 360 0 0 chr15 27092094 27092247 -74288274 + CT-rich Low_complexity Low_complexity 2 154 0 2919 13 0 0 chr15 27092631 27092940 -74287581 + AluYb8 SINE Alu 1 309 -9 1366 237 59 3 chr15 27093464 27093785 -74286736 - MER70A LTR ERVL -130 342 4 1018 217 5 0 chr15 27094683 27094886 -74285635 - MLT1B LTR MaLR -11 379 176 1108 146 29 0 chr15 27094886 27095057 -74285464 - FRAM SINE Alu -3 173 1 779 213 30 0 chr15 27095061 27095230 -74285291 - MLT1B LTR MaLR -213 177 4 1308 204 19 94 chr15 27096585 27097001 -74283520 - MLT1B LTR MaLR -5 385 1 260 212 24 0 chr15 27097168 27097253 -74283268 + (CATAT)n Simple_repeat Simple_repeat 4 90 0 606 195 29 6 chr15 27097268 27097442 -74283079 + (CATAT)n Simple_repeat Simple_repeat 1 178 0 558 227 80 25 chr15 27097997 27098160 -74282361 - MER69A DNA AcHobo -5 172 1 365 216 21 0 chr15 27099210 27099307 -74281214 + (CATAT)n Simple_repeat Simple_repeat 5 103 0 2289 111 0 0 chr15 27099507 27099804 -74280717 - AluSx SINE Alu -15 297 1 25 0 0 0 chr15 27100034 27100059 -74280462 + AT_rich Low_complexity Low_complexity 1 25 0 2125 116 17 0 chr15 27100720 27101012 -74279509 - AluSg SINE Alu -13 297 1 216 279 18 6 chr15 27101328 27101439 -74279082 - MER5A DNA MER1_type 0 189 12 388 272 73 15 chr15 27102352 27102488 -74278033 + MER69 DNA AcHobo 6 149 -2377 343 194 15 0 chr15 27102505 27102572 -74277949 - MLT1G1 LTR MaLR 0 595 528 4906 229 47 36 chr15 27102578 27103621 -74276900 + L1MDb LINE L1 8 1069 -5340 2150 147 0 10 chr15 27103621 27103934 -74276587 - AluSx SINE Alu -2 310 1 4906 229 47 36 chr15 27103934 27104203 -74276318 + L1MDb LINE L1 1069 1334 -5075 2335 126 0 0 chr15 27104213 27104523 -74275998 + AluSg SINE Alu 1 310 0 656 291 12 8 chr15 27104523 27104764 -74275757 + L1MDb LINE L1 2776 3017 -3389 1320 169 22 158 chr15 27105005 27105309 -74275212 - Zaphod DNA AcHobo -238 3793 3449 213 39 0 0 chr15 27105309 27105335 -74275186 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 1320 169 22 158 chr15 27105335 27105358 -74275163 - Zaphod DNA AcHobo -582 3449 3425 1821 118 19 23 chr15 27105358 27105620 -74274901 - AluSx SINE Alu -51 261 1 1320 169 22 158 chr15 27105620 27105860 -74274661 - Zaphod DNA AcHobo -606 3425 3284 205 53 70 18 chr15 27106036 27106093 -74274428 + (TA)n Simple_repeat Simple_repeat 1 60 0 * 309 231 70 70 chr15 27106060 27106240 -74274281 + L1MC4 LINE L1 1933 6988 -1334 2278 69 0 10 chr15 27106253 27106558 -74273963 - AluY SINE Alu -9 302 1 245 325 83 17 chr15 27106564 27106684 -74273837 - L1MEd LINE L1 -5496 623 496 604 191 48 38 chr15 27106686 27106924 -74273597 + MLT1E3 LTR MaLR 1 285 -369 2853 106 27 12 chr15 27106970 27107384 -74273137 + MSTA LTR MaLR 1 420 -8 1017 226 41 79 chr15 27107391 27107616 -74272905 + MLT1E3 LTR MaLR 292 501 -123 2261 93 3 0 chr15 27107616 27107917 -74272604 - AluSp SINE Alu -11 302 1 1017 226 41 79 chr15 27107917 27108031 -74272490 + MLT1E3 LTR MaLR 501 618 -6 727 216 117 47 chr15 27109065 27109450 -74271071 + MLT1G3 LTR MaLR 68 483 -107 3910 162 33 7 chr15 27109490 27110220 -74270301 - L1MD1 LINE L1 0 6242 5494 2790 144 44 6 chr15 27110228 27110707 -74269814 - L1MB2 LINE L1 -4 6167 5671 198 0 0 0 chr15 27110715 27110737 -74269784 + (TA)n Simple_repeat Simple_repeat 2 23 0 1999 109 0 7 chr15 27110740 27111024 -74269497 - AluSq SINE Alu -31 282 1 5928 214 36 48 chr15 27111037 27111229 -74269292 - L1MD1 LINE L1 -1949 4197 4004 1876 134 7 0 chr15 27111229 27111506 -74269015 - AluSx SINE Alu -17 295 17 5928 214 36 48 chr15 27111506 27112961 -74267560 - L1MD1 LINE L1 -2142 4004 2571 2576 125 72 5 chr15 27112961 27113362 -74267159 - MSTA LTR MaLR 0 428 1 5928 214 36 48 chr15 27113362 27113540 -74266981 - L1MD1 LINE L1 -3575 2571 2392 5361 135 5 24 chr15 27113540 27114703 -74265818 + L1PA16 LINE L1 5015 6160 -6 297 230 95 32 chr15 27114852 27114978 -74265543 - L1M3d LINE L1 -5756 135 2 * 3239 223 115 91 chr15 27114970 27115452 -74265069 - L1MB2 LINE L1 -743 5403 4934 1711 166 3 19 chr15 27115452 27115765 -74264756 - AluJo SINE Alu -2 310 3 3239 223 115 91 chr15 27115765 27115987 -74264534 - L1MB2 LINE L1 -1212 4934 4719 1492 156 26 22 chr15 27115987 27116257 -74264264 - AluJo SINE Alu -30 282 12 3239 223 115 91 chr15 27116257 27116361 -74264160 - L1MB2 LINE L1 -1427 4719 4619 424 60 0 230 chr15 27116361 27116408 -74264113 + MADE1 DNA Mariner 4 18 -62 9727 62 6 76 chr15 27116408 27117898 -74262623 - SVA Other Other 0 1386 1 424 60 0 230 chr15 27117898 27117950 -74262571 + MADE1 DNA Mariner 18 80 0 3239 223 115 91 chr15 27117950 27118662 -74261859 - L1MB2 LINE L1 -1527 4619 3926 2194 149 86 8 chr15 27118662 27119059 -74261462 + MSTA LTR MaLR 1 428 0 3239 223 115 91 chr15 27119059 27119109 -74261412 - L1MB2 LINE L1 -2220 3926 3879 704 187 8 0 chr15 27119109 27119232 -74261289 + FLAM_C SINE Alu 6 129 -14 3239 223 115 91 chr15 27119232 27120196 -74260325 - L1MB2 LINE L1 -2267 3879 2751 1078 215 106 8 chr15 27120203 27120459 -74260062 + AluJo SINE Alu 9 289 -23 438 271 8 0 chr15 27120464 27120586 -74259935 - L1MB2 LINE L1 -3389 2757 2635 496 250 45 82 chr15 27120730 27120950 -74259571 - L1M4 LINE L1 -1986 4160 3949 207 0 0 0 chr15 27121040 27121063 -74259458 + (T)n Simple_repeat Simple_repeat 1 23 0 397 279 50 95 chr15 27121089 27121278 -74259243 - L1M4 LINE L1 -2230 3916 3747 1093 142 296 9 chr15 27121278 27121511 -74259010 - AluYa5 SINE Alu -1 300 1 397 279 50 95 chr15 27121511 27121658 -74258863 - L1M4 LINE L1 -2399 3747 3595 202 307 23 23 chr15 27122411 27122499 -74258022 - L2 LINE L2 -1323 1991 1904 975 260 157 34 chr15 27122508 27123074 -74257447 + L2 LINE L2 2369 3088 -225 1833 49 4 0 chr15 27123074 27123300 -74257221 - AluY SINE Alu -4 307 81 975 260 157 34 chr15 27123300 27123549 -74256972 + L2 LINE L2 3088 3305 -8 201 337 34 11 chr15 27125842 27125931 -74254590 + MIR3 SINE MIR 107 197 -11 3294 116 65 35 chr15 27126569 27126984 -74253537 + MER41C LTR ERV1 2 438 -116 2330 83 0 0 chr15 27126984 27127285 -74253236 - AluY SINE Alu -10 301 1 3294 116 65 35 chr15 27127285 27127406 -74253115 + MER41C LTR ERV1 438 554 0 443 294 101 24 chr15 27128161 27128409 -74252112 + L1ME3A LINE L1 5618 5884 -286 1651 143 52 11 chr15 27128418 27128705 -74251816 + AluJb SINE Alu 1 299 -13 4288 147 20 33 chr15 27128801 27129410 -74251111 - MER4E LTR ERV1 0 779 181 2196 108 3 0 chr15 27129410 27129717 -74250804 - AluSx SINE Alu -4 308 1 4288 147 20 33 chr15 27129717 27129896 -74250625 - MER4E LTR ERV1 -598 181 1 207 204 0 0 chr15 27129908 27129952 -74250569 + CT-rich Low_complexity Low_complexity 2 45 0 5004 88 44 0 chr15 27130542 27131204 -74249317 - LTR8 LTR ERV1 0 691 1 866 256 75 17 chr15 27131350 27131643 -74248878 - MER5C DNA MER1_type -8 316 7 4244 127 116 83 chr15 27131765 27132009 -74248512 - MER4D LTR ERV1 0 872 638 1877 148 3 0 chr15 27132009 27132299 -74248222 + AluSx SINE Alu 1 291 -21 4244 127 116 83 chr15 27132299 27132690 -74247831 - MER4D LTR ERV1 -234 638 200 1764 159 3 3 chr15 27132690 27132973 -74247548 + AluJb SINE Alu 1 283 -29 4244 127 116 83 chr15 27132973 27133180 -74247341 - MER4D LTR ERV1 -672 200 1 3768 106 23 25 chr15 27134395 27134900 -74245621 - MER61E LTR ERV1 0 569 64 2159 120 3 0 chr15 27134900 27135208 -74245313 + AluSg SINE Alu 2 310 0 3768 106 23 25 chr15 27135208 27135268 -74245253 - MER61E LTR ERV1 -505 64 5 470 143 95 0 chr15 27135357 27135441 -74245080 - MER103 DNA DNA -44 122 31 2408 38 20 0 chr15 27135814 27136106 -74244415 + AluY SINE Alu 1 298 -13 202 0 91 0 chr15 27137608 27137641 -74242880 + T-rich Low_complexity Low_complexity 5 40 0 314 260 197 16 chr15 27138033 27138160 -74242361 + MIR3 SINE MIR 7 156 -52 239 195 0 91 chr15 27138358 27138435 -74242086 - L2 LINE L2 -9 3263 3194 2558 153 11 68 chr15 27138436 27138631 -74241890 - LTR54 LTR ERV1 0 510 305 2204 94 3 3 chr15 27138631 27138928 -74241593 - AluSp SINE Alu -16 297 1 2558 153 11 68 chr15 27138928 27139273 -74241248 - LTR54 LTR ERV1 -205 305 1 1764 164 55 7 chr15 27139273 27139583 -74240938 - MER89-int LTR ERV1 -393 7144 6820 1110 101 5 101 chr15 27139595 27139812 -74240709 - MER30 DNA MER1_type -33 197 2 464 293 107 19 chr15 27139814 27140029 -74240492 - MER89-int LTR ERV1 -712 6825 6592 338 197 0 0 chr15 27140084 27140145 -74240376 - MER89-int LTR ERV1 -697 4174 4114 4813 193 108 65 chr15 27140190 27140617 -74239904 - MER89-int LTR ERV1 -514 5817 5410 2283 92 0 0 chr15 27140617 27140920 -74239601 + AluSp SINE Alu 1 303 -10 4813 193 108 65 chr15 27140920 27141175 -74239346 - MER89-int LTR ERV1 -921 5410 5168 1562 173 20 13 chr15 27141175 27141476 -74239045 - AluJb SINE Alu -9 303 1 4813 193 108 65 chr15 27141476 27141922 -74238599 - MER89-int LTR ERV1 -1163 5168 4743 1665 127 31 55 chr15 27141922 27142263 -74238258 + AluSx SINE Alu 1 334 0 4813 193 108 65 chr15 27142263 27143327 -74237194 - MER89-int LTR ERV1 -1588 4743 2391 523 178 207 7 chr15 27143338 27143473 -74237048 - MER34C LTR ERV1 -255 330 169 706 190 0 36 chr15 27143558 27143695 -74236826 - AluJo SINE Alu -178 134 3 321 226 36 24 chr15 27143702 27143786 -74236735 - MER89-int LTR ERV1 -3352 2911 2827 722 209 62 67 chr15 27143829 27144226 -74236295 - MER89-int LTR ERV1 -2696 2427 1719 1738 219 62 68 chr15 27144240 27144504 -74236017 - MER89-int LTR ERV1 -2946 2278 2014 1834 136 0 34 chr15 27144504 27144822 -74235699 + AluSx SINE Alu 1 308 0 2304 141 34 69 chr15 27144832 27145226 -74235295 - MSTB1 LTR MaLR 0 432 54 2027 105 0 43 chr15 27145226 27145551 -74234970 - AluSx SINE Alu -1 311 1 2304 141 34 69 chr15 27145551 27145604 -74234917 - MSTB1 LTR MaLR -378 54 1 1738 219 62 68 chr15 27145604 27146403 -74234118 - MER89-int LTR ERV1 -3219 2005 1193 307 247 0 14 chr15 27146456 27146529 -74233992 + MER57-int LTR ERV1 548 619 -6918 325 279 110 41 chr15 27146609 27146828 -74233693 - MER34C LTR ERV1 -192 393 160 186 43 0 0 chr15 27146914 27146937 -74233584 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 822 153 0 0 chr15 27146942 27147060 -74233461 - FLAM_C SINE Alu -15 118 1 262 281 42 13 chr15 27147060 27147162 -74233359 - MER89-int LTR ERV1 -3220 2726 829 317 239 53 62 chr15 27147655 27147768 -74232753 - MER89-int LTR ERV1 -5432 1369 1258 272 228 17 173 chr15 27147992 27148281 -74232240 - MER89-int LTR ERV1 -6761 776 533 700 281 106 33 chr15 27148400 27148702 -74231819 - MER89-int LTR ERV1 -4079 2252 1929 1531 145 71 74 chr15 27148732 27149069 -74231452 - LTR54 LTR ERV1 0 510 175 2463 144 58 5 chr15 27149674 27150084 -74230437 - MSTB1 LTR MaLR 0 432 1 33 0 0 0 chr15 27150185 27150218 -74230303 + AT_rich Low_complexity Low_complexity 1 33 0 301 134 0 45 chr15 27150218 27150285 -74230236 - L1MA8 LINE L1 -3 6288 6225 3058 142 21 56 chr15 27150467 27150622 -74229899 - MER34C LTR ERV1 -2 583 424 2088 92 27 14 chr15 27150622 27150917 -74229604 - AluSp SINE Alu -14 299 1 3058 142 21 56 chr15 27150917 27151365 -74229156 - MER34C LTR ERV1 -161 424 1 267 182 182 0 chr15 27151426 27151481 -74229040 - MIR3 SINE MIR -52 156 92 190 236 138 49 chr15 27151675 27151798 -74228723 + L2 LINE L2 3094 3227 -86 1593 139 66 0 chr15 27151936 27152209 -74228312 - AluSx SINE Alu -9 303 13 310 146 0 18 chr15 27152211 27152266 -74228255 - AluSq/x SINE Alu -164 139 86 1171 149 33 14 chr15 27152268 27152482 -74228039 - AluSx SINE Alu -94 218 1 2672 100 11 0 chr15 27152608 27152968 -74227553 - THE1B LTR MaLR 0 364 1 2925 168 163 7 chr15 27154032 27154609 -74225912 - Tigger7 DNA MER2_type -1820 667 1 3805 147 11 72 chr15 27154637 27155373 -74225148 - LTR8 LTR ERV1 0 691 1 189 226 43 32 chr15 27155653 27155716 -74224805 - MIR SINE MIR -97 165 103 359 179 15 0 chr15 27156039 27156106 -74224415 - MER116 DNA Mariner 0 80 13 860 227 23 0 chr15 27156739 27156911 -74223610 - MER45A DNA AcHobo -2 176 1 201 301 41 0 chr15 27157596 27157669 -74222852 + MIR SINE MIR 45 120 -88 2138 115 0 11 chr15 27158640 27158955 -74221566 - AluSx SINE Alu 0 312 1 362 292 26 60 chr15 27159281 27159477 -74221044 - L1M4 LINE L1 -3467 2679 2491 2202 122 0 3 chr15 27159477 27159788 -74220733 - AluSx SINE Alu -2 310 1 362 292 26 60 chr15 27159788 27159824 -74220697 - L1M4 LINE L1 -3655 2491 2455 24 0 0 0 chr15 27159856 27159880 -74220641 + AT_rich Low_complexity Low_complexity 1 24 0 2911 10 0 0 chr15 27159880 27160188 -74220333 - AluYa5 SINE Alu -3 308 1 11508 212 60 61 chr15 27160208 27160429 -74220092 - L1MC2 LINE L1 -15 6609 6389 2337 104 0 13 chr15 27160429 27160745 -74219776 - AluSx SINE Alu 0 312 1 11508 212 60 61 chr15 27160745 27160962 -74219559 - L1MC2 LINE L1 -235 6389 6173 2033 148 0 3 chr15 27160962 27161265 -74219256 - AluSx SINE Alu -10 302 1 11508 212 60 61 chr15 27161265 27161329 -74219192 - L1MC2 LINE L1 -451 6173 6110 1755 150 0 4 chr15 27161329 27161606 -74218915 - AluSx SINE Alu 0 305 30 11508 212 60 61 chr15 27161606 27164388 -74216133 - L1MC2 LINE L1 -514 6110 3326 2142 121 7 0 chr15 27164388 27164685 -74215836 - AluSg1 SINE Alu -5 304 6 11508 212 60 61 chr15 27164685 27166362 -74214159 - L1MC2 LINE L1 -3298 3326 1648 2373 80 0 3 chr15 27166362 27166679 -74213842 - AluSp SINE Alu 0 316 1 11508 212 60 61 chr15 27166679 27166703 -74213818 - L1MC2 LINE L1 -4976 1648 1625 1222 167 32 137 chr15 27166703 27167111 -74213410 + MLT1A1 LTR MaLR 1 365 0 11508 212 60 61 chr15 27167111 27167346 -74213175 - L1MC2 LINE L1 -4999 1625 1391 2175 103 13 22 chr15 27167346 27167658 -74212863 - AluSx SINE Alu -3 309 1 11508 212 60 61 chr15 27167658 27167937 -74212584 - L1MC2 LINE L1 -5233 1391 1113 306 0 0 0 chr15 27167937 27167971 -74212550 + (TG)n Simple_repeat Simple_repeat 2 35 0 2201 123 0 10 chr15 27167972 27168137 -74212384 - AluSx SINE Alu -13 299 137 2332 95 0 0 chr15 27168137 27168433 -74212088 - AluSq SINE Alu -17 296 1 2201 123 0 10 chr15 27168433 27168569 -74211952 - AluSx SINE Alu -175 137 1 11508 212 60 61 chr15 27168569 27168999 -74211522 - L1MC2 LINE L1 -5511 1113 684 1887 138 22 0 chr15 27168999 27169310 -74211211 - AluSq SINE Alu 0 318 2 11508 212 60 61 chr15 27169310 27169508 -74211013 - L1MC2 LINE L1 -5940 684 487 1854 188 34 11 chr15 27169508 27169865 -74210656 + MLT1A1 LTR MaLR 1 365 0 11508 212 60 61 chr15 27169865 27170330 -74210191 - L1MC2 LINE L1 -6137 487 2 2071 124 0 10 chr15 27170375 27170665 -74209856 - AluSx SINE Alu -25 287 1 554 313 86 4 chr15 27170725 27171003 -74209518 - L1MEc LINE L1 -4579 1817 1517 1124 165 0 0 chr15 27171123 27171299 -74209222 + AluJo SINE Alu 119 294 -18 453 316 93 44 chr15 27171808 27172172 -74208349 + L2 LINE L2 2932 3313 0 1338 174 113 43 chr15 27172768 27172912 -74207609 - AluJo SINE Alu 0 302 170 2296 92 3 10 chr15 27172912 27173218 -74207303 - AluSg SINE Alu -6 304 1 1338 174 113 43 chr15 27173218 27173355 -74207166 - AluJo SINE Alu -132 170 1 565 284 97 40 chr15 27173700 27174176 -74206345 - HAL1 LINE L1 -1191 1316 814 1684 145 55 3 chr15 27175014 27175324 -74205197 + L1MA7 LINE L1 5960 6285 -6 2289 102 0 0 chr15 27175392 27175709 -74204812 + AluSx SINE Alu 1 317 0 2925 167 33 0 chr15 27175818 27176332 -74204189 - L1MB3 LINE L1 -101 6082 5552 2239 107 3 19 chr15 27176731 27177048 -74203473 - AluSx SINE Alu 0 312 1 4689 212 49 72 chr15 27177472 27178800 -74201721 + L1MC5 LINE L1 1 1297 -5245 3467 220 33 20 chr15 27178822 27178863 -74201658 + L1MC5 LINE L1 1239 1278 -5368 1612 142 9 99 chr15 27178863 27179195 -74201326 + AluJo SINE Alu 1 302 0 3467 220 33 20 chr15 27179195 27180208 -74200313 + L1MC5 LINE L1 1278 2397 -4249 925 145 0 0 chr15 27180210 27180341 -74200180 + AluSq/x SINE Alu 1 131 -181 513 273 32 18 chr15 27180459 27180679 -74199842 - L1MEc LINE L1 -4849 1547 1325 * 2345 73 22 3 chr15 27180677 27180994 -74199527 + L1PA13 LINE L1 5725 6047 -116 2500 116 108 28 chr15 27180994 27181427 -74199094 + LTR12 LTR ERV1 1 468 -246 446 209 69 0 chr15 27181457 27181571 -74198950 + L1PA13 LINE L1 6041 6161 -2 737 176 25 6 chr15 27182223 27182382 -74198139 + MER103 DNA DNA 3 164 -2 1890 110 24 0 chr15 27182669 27182923 -74197598 - AluSp SINE Alu -53 260 1 316 200 24 0 chr15 27184200 27184285 -74196236 + GA-rich Low_complexity Low_complexity 2 88 0 2250 106 0 10 chr15 27185409 27185710 -74194811 - AluSx SINE Alu -14 298 1 224 146 0 21 chr15 27185712 27185760 -74194761 + (TTTTC)n Simple_repeat Simple_repeat 2 48 0 518 68 0 0 chr15 27185761 27185835 -74194686 - Alu SINE Alu 0 310 237 1971 102 0 0 chr15 27185938 27186192 -74194329 + AluSx SINE Alu 55 308 -4 3050 218 39 18 chr15 27186197 27187037 -74193484 + L1MC5 LINE L1 3340 4197 -2447 1952 248 107 89 chr15 27187045 27187607 -74192914 + L1MC5 LINE L1 5923 6473 -1986 2288 108 10 0 chr15 27187607 27187912 -74192609 + AluSq SINE Alu 1 308 -5 1952 248 107 89 chr15 27187912 27188569 -74191952 + L1MC5 LINE L1 6473 7117 -1342 366 42 0 0 chr15 27188569 27188617 -74191904 + (CA)n Simple_repeat Simple_repeat 1 48 0 1952 248 107 89 chr15 27188617 27189149 -74191372 + L1MC5 LINE L1 7117 7682 -777 2555 65 0 3 chr15 27189149 27189456 -74191065 + AluY SINE Alu 1 306 -5 1952 248 107 89 chr15 27189456 27189657 -74190864 + L1MC5 LINE L1 7682 7878 -581 2303 101 0 0 chr15 27190202 27190498 -74190023 - AluSx SINE Alu -2 310 15 789 219 193 0 chr15 27190504 27190742 -74189779 - MER33 DNA MER1_type -40 284 1 223 193 70 18 chr15 27191472 27191529 -74188992 + MIR SINE MIR 89 148 -114 242 232 347 0 chr15 27193035 27193130 -74187391 + L1ME LINE L1 5530 5657 -464 231 303 0 0 chr15 27193189 27193265 -74187256 + L1ME LINE L1 5734 5809 -361 436 135 0 0 chr15 27193523 27193597 -74186924 - L1MA4 LINE L1 -6 6294 6221 2277 92 16 3 chr15 27193668 27193972 -74186549 + AluSc SINE Alu 1 308 -1 201 94 0 0 chr15 27194624 27194656 -74185865 + (TG)n Simple_repeat Simple_repeat 2 33 0 2005 95 40 18 chr15 27195615 27195889 -74184632 - AluSx SINE Alu -32 280 1 1113 193 3 134 chr15 27195913 27196294 -74184227 - MER33 DNA MER1_type -4 320 1 296 242 82 87 chr15 27196400 27196619 -74183902 - L1ME LINE L1 -302 5819 5602 403 186 20 10 chr15 27197860 27197962 -74182559 + CT-rich Low_complexity Low_complexity 3 105 0 2282 118 0 6 chr15 27197966 27198281 -74182240 - AluSq SINE Alu 0 313 1 2375 79 0 7 chr15 27198329 27198640 -74181881 - AluSx SINE Alu 0 312 1 4669 186 27 21 chr15 27198657 27200138 -74180383 - L1MB5 LINE L1 -8 6166 4680 2158 128 3 3 chr15 27200140 27200446 -74180075 + AluSx SINE Alu 1 306 -6 451 226 182 13 chr15 27200601 27200760 -74179761 - L1MB5 LINE L1 -1729 4417 4232 2465 101 0 0 chr15 27200763 27201071 -74179450 - AluSx SINE Alu -4 308 1 698 293 76 12 chr15 27201096 27201470 -74179051 - L1ME3A LINE L1 -192 5972 5571 207 0 0 0 chr15 27201919 27201942 -74178579 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 216 0 0 0 chr15 27202197 27202221 -74178300 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 442 339 41 9 chr15 27203050 27203271 -74177250 - MIR SINE MIR -34 228 1 2268 126 0 0 chr15 27203384 27203693 -74176828 - AluSg SINE Alu -1 309 1 338 265 29 29 chr15 27204231 27204367 -74176154 - MER69A DNA AcHobo -14 163 28 513 169 169 14 chr15 27204905 27205047 -74175474 - MER96B DNA MER1_type? -241 176 13 3592 126 60 27 chr15 27205399 27205996 -74174525 - LTR12 LTR ERV1 -97 617 1 4010 166 102 20 chr15 27206039 27206497 -74174024 - L1MB3 LINE L1 0 6183 5764 2394 75 0 31 chr15 27206497 27206818 -74173703 + AluY SINE Alu 1 311 0 4010 166 102 20 chr15 27206818 27207268 -74173253 - L1MB3 LINE L1 -419 5764 5201 305 309 73 12 chr15 27208880 27209045 -74171476 - L1ME4a LINE L1 -3 6118 5944 2126 92 3 49 chr15 27209062 27209389 -74171132 + AluSx SINE Alu 1 312 0 2262 158 92 15 chr15 27209402 27209859 -74170662 + L1MB7 LINE L1 5693 6184 0 188 340 11 64 chr15 27210101 27210195 -74170326 - MIR SINE MIR -45 217 129 319 264 56 0 chr15 27211115 27211240 -74169281 + L2 LINE L2 1707 1838 -1476 195 286 0 0 chr15 27211593 27211635 -74168886 - MIR SINE MIR -115 147 106 186 254 45 0 chr15 27212468 27212535 -74167986 - L2 LINE L2 -247 3066 2997 351 230 0 66 chr15 27213295 27213447 -74167074 + G-rich Low_complexity Low_complexity 3 144 0 3183 219 109 16 chr15 27213476 27214351 -74166170 - L1MC4 LINE L1 -432 7610 6655 1314 241 92 50 chr15 27214356 27214857 -74165664 + MLT1F LTR MaLR 21 542 0 1300 226 80 12 chr15 27214863 27215199 -74165322 - L1MC4 LINE L1 -1340 6702 6344 390 150 28 39 chr15 27216138 27216318 -74164203 + (CA)n Simple_repeat Simple_repeat 1 178 0 1479 242 38 10 chr15 27218231 27218615 -74161906 + L1MB8 LINE L1 89 553 -6302 * 8233 220 52 20 chr15 27218612 27222077 -74158444 + L1MB8 LINE L1 3110 6465 -524 297 0 0 0 chr15 27222077 27222110 -74158411 + (TC)n Simple_repeat Simple_repeat 2 34 0 * 351 0 0 0 chr15 27222109 27222148 -74158373 + (TA)n Simple_repeat Simple_repeat 2 40 0 8233 220 52 20 chr15 27222110 27222149 -74158372 + L1MB8 LINE L1 6465 6501 -488 2073 124 0 0 chr15 27222149 27222447 -74158074 - AluSx SINE Alu -14 298 1 8233 220 52 20 chr15 27222447 27222504 -74158017 + L1MB8 LINE L1 6501 6977 -12 193 187 11 66 chr15 27222513 27222604 -74157917 + GA-rich Low_complexity Low_complexity 3 88 0 1397 180 0 31 chr15 27223280 27223541 -74156980 + AluJb SINE Alu 13 265 -47 802 152 5 105 chr15 27224973 27225142 -74155379 - MER53 DNA DNA 0 189 43 2025 177 11 30 chr15 27225142 27225359 -74155162 - MLT1A1 LTR MaLR 0 365 156 2193 103 3 10 chr15 27225359 27225669 -74154852 - AluSq SINE Alu -5 308 1 2025 177 11 30 chr15 27225669 27225823 -74154698 - MLT1A1 LTR MaLR -209 156 1 802 152 5 105 chr15 27225823 27225863 -74154658 - MER53 DNA DNA -146 43 1 248 338 149 14 chr15 27226457 27226605 -74153916 - MIR SINE MIR -1 261 94 2814 181 68 10 chr15 27227096 27227687 -74152834 - L1MD1 LINE L1 0 6242 5618 206 241 19 19 chr15 27229262 27229316 -74151205 + L2 LINE L2 3214 3267 -5 201 303 117 56 chr15 27229953 27230115 -74150406 - MIR SINE MIR -59 203 32 1893 147 26 10 chr15 27230375 27230681 -74149840 + AluJb SINE Alu 1 311 -1 2234 102 0 9 chr15 27232140 27232455 -74148066 + AluSq SINE Alu 1 312 -1 348 217 15 31 chr15 27233964 27234231 -74146290 + (TG)n Simple_repeat Simple_repeat 1 262 0 1756 177 0 3 chr15 27234421 27234726 -74145795 + AluJo SINE Alu 1 304 -8 2015 118 10 14 chr15 27235032 27235329 -74145192 - AluSx SINE Alu -16 296 1 1552 158 67 64 chr15 27236038 27236412 -74144109 - THE1C LTR MaLR 0 375 1 2579 76 12 3 chr15 27236583 27236927 -74143594 - L1PA13 LINE L1 -12 6151 5805 312 317 19 0 chr15 27237056 27237160 -74143361 - HAL1 LINE L1 -711 1796 1691 591 143 0 0 chr15 27237298 27237382 -74143139 - AluS SINE Alu -228 85 2 749 158 0 0 chr15 27237397 27237524 -74142997 - L1M4 LINE L1 -1117 5029 4903 908 339 128 17 chr15 27237665 27238378 -74142143 - L2 LINE L2 -564 2750 1959 264 325 17 8 chr15 27239085 27239202 -74141319 + (TG)n Simple_repeat Simple_repeat 1 118 0 227 302 16 0 chr15 27239370 27239433 -74141088 + GA-rich Low_complexity Low_complexity 3 66 0 1684 158 4 0 chr15 27241047 27241326 -74139195 - AluJb SINE Alu -12 300 21 240 35 0 0 chr15 27241585 27241614 -74138907 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1902 129 11 0 chr15 27241617 27241895 -74138626 - AluSx SINE Alu -31 281 1 465 270 131 42 chr15 27244847 27245026 -74135495 - L1M4 LINE L1 -2673 3473 3311 2096 122 0 26 chr15 27245026 27245338 -74135183 - AluSx SINE Alu -8 304 1 465 270 131 42 chr15 27245338 27245822 -74134699 - L1M4 LINE L1 -2835 3311 2751 22 0 0 0 chr15 27246019 27246041 -74134480 + AT_rich Low_complexity Low_complexity 1 22 0 2188 60 4 0 chr15 27246337 27246641 -74133880 + AluY SINE Alu 1 305 0 229 328 92 8 chr15 27246715 27246846 -74133675 + MIR SINE MIR 70 211 -51 211 200 0 0 chr15 27247608 27247643 -74132878 + polypurine Low_complexity Low_complexity 1 35 0 880 128 44 61 chr15 27248199 27248379 -74132142 - L1MCa LINE L1 -5736 690 514 2217 69 17 3 chr15 27248379 27248669 -74131852 + AluY SINE Alu 1 294 -17 282 277 71 19 chr15 27248905 27249060 -74131461 - L1ME3A LINE L1 -15 6155 5993 190 293 67 0 chr15 27249143 27249218 -74131303 + L2 LINE L2 3137 3216 -56 550 350 35 0 chr15 27249758 27249958 -74130563 - MIR SINE MIR -28 234 28 711 271 30 48 chr15 27250513 27250828 -74129693 + L1MEc LINE L1 1426 1747 -829 31 26 0 0 chr15 27251017 27251055 -74129466 + AT_rich Low_complexity Low_complexity 1 38 0 1926 115 4 4 chr15 27251087 27251394 -74129127 - AluSx SINE Alu 0 312 6 227 250 140 30 chr15 27253183 27253283 -74127238 + MER5A DNA MER1_type 74 184 -5 388 200 0 24 chr15 27253429 27253514 -74127007 - MER69 DNA AcHobo -1135 91 9 892 117 0 29 chr15 27254383 27254520 -74126001 + AluSq/x SINE Alu 1 133 -180 1796 150 3 7 chr15 27254523 27254829 -74125692 + AluSx SINE Alu 1 305 -7 326 246 234 50 chr15 27255171 27255492 -74125029 - LTR16A1 LTR ERVL -77 380 1 224 250 164 39 chr15 27256627 27256731 -74123790 + L3b LINE CR1 1334 1450 -133 225 221 12 23 chr15 27257357 27257443 -74123078 + (TA)n Simple_repeat Simple_repeat 2 86 0 180 0 0 0 chr15 27257803 27257823 -74122698 + (A)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr15 27260393 27260413 -74120108 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1075 69 0 50 chr15 27261043 27261203 -74119318 - AluY SINE Alu -3 308 157 368 333 8 0 chr15 27262081 27262201 -74118320 - MIR3 SINE MIR -3 205 85 198 284 52 75 chr15 27264201 27264335 -74116186 + L2 LINE L2 3139 3269 -3 283 308 155 23 chr15 27266087 27266780 -74113741 + L2 LINE L2 2383 3248 -24 1361 152 45 26 chr15 27266787 27267051 -74113470 - AluJo SINE Alu -1 311 43 934 142 0 8 chr15 27267347 27267481 -74113040 - FLAM_C SINE Alu -10 133 1 2057 145 0 7 chr15 27268102 27268412 -74112109 - AluJo SINE Alu 0 312 5 1297 145 20 5 chr15 27269861 27270061 -74110460 + AluSq SINE Alu 1 203 -110 565 75 0 0 chr15 27270061 27270128 -74110393 + AluSq/x SINE Alu 69 135 -178 2091 115 13 13 chr15 27270128 27270432 -74110089 + AluSx SINE Alu 1 304 -8 1897 134 36 0 chr15 27270874 27271151 -74109370 + AluSx SINE Alu 1 287 -25 2081 124 13 3 chr15 27271159 27271465 -74109056 + AluSq SINE Alu 1 309 -4 2223 98 3 0 chr15 27271479 27271812 -74108709 + AluSx SINE Alu 1 334 0 2314 72 0 14 chr15 27272517 27272807 -74107714 - AluSx SINE Alu -26 286 1 243 0 0 0 chr15 27272840 27272867 -74107654 + (TG)n Simple_repeat Simple_repeat 2 28 0 1009 139 0 13 chr15 27273760 27273918 -74106603 + AluSg/x SINE Alu 140 295 -14 3508 230 23 20 chr15 27273920 27274030 -74106491 + L1M4c LINE L1 2127 2235 -4147 788 220 0 0 chr15 27274030 27274162 -74106359 + FLAM_A SINE Alu 1 132 -1 3508 230 23 20 chr15 27274162 27275211 -74105310 + L1M4c LINE L1 2235 3285 -3097 3801 233 68 38 chr15 27275286 27276241 -74104280 + L1MDb LINE L1 775 1750 -4656 738 194 8 0 chr15 27276241 27276370 -74104151 - FLAM_A SINE Alu -3 130 1 3801 233 68 38 chr15 27276370 27276871 -74103650 + L1MDb LINE L1 1750 2234 -4172 3581 223 73 60 chr15 27276885 27277889 -74102632 + L1M4c LINE L1 3856 4845 -1557 438 69 0 0 chr15 27277889 27277947 -74102574 + (TTG)n Simple_repeat Simple_repeat 2 59 0 785 174 0 0 chr15 27277949 27278064 -74102457 - FLAM_C SINE Alu -28 115 1 3581 223 73 60 chr15 27278064 27279091 -74101430 + L1M4c LINE L1 4845 6024 -378 2240 99 0 0 chr15 27279107 27279417 -74101104 + AluSx SINE Alu 2 311 0 204 118 29 0 chr15 27280107 27280141 -74100380 + G-rich Low_complexity Low_complexity 4 38 0 2185 105 0 0 chr15 27280444 27280764 -74099757 - AluSx SINE Alu 0 320 1 22 35 0 0 chr15 27281788 27281817 -74098704 + AT_rich Low_complexity Low_complexity 1 29 0 674 241 55 19 chr15 27282045 27282226 -74098295 + MIR SINE MIR 12 192 -62 1027 121 0 0 chr15 27284117 27284249 -74096272 + FLAM_C SINE Alu 2 133 0 330 287 101 32 chr15 27286609 27286797 -74093724 - L1ME3A LINE L1 0 6170 5970 595 153 40 48 chr15 27286817 27286941 -74093580 - MLT1G LTR MaLR 0 590 468 881 200 40 0 chr15 27286942 27287092 -74093429 + MER63A DNA MER1_type 55 210 0 1276 244 168 21 chr15 27287092 27287478 -74093043 - MLT1G LTR MaLR -130 460 18 2250 62 24 0 chr15 27287478 27287769 -74092752 - AluYa5 SINE Alu -13 298 1 1392 226 108 46 chr15 27287865 27288386 -74092135 - L1MC5 LINE L1 -430 7531 6979 794 191 31 6 chr15 27288388 27288550 -74091971 + MLT1A2 LTR MaLR 209 374 0 2146 99 19 19 chr15 27288696 27289008 -74091513 - AluSx SINE Alu 0 312 1 669 285 40 59 chr15 27289013 27289469 -74091052 - HAL1b LINE L1 -841 507 61 2583 62 0 0 chr15 27289888 27290197 -74090324 - AluY SINE Alu -2 309 1 995 265 189 28 chr15 27290931 27291565 -74088956 + L2 LINE L2 2549 3313 0 1886 109 0 7 chr15 27291729 27292003 -74088518 + AluSx SINE Alu 40 311 -1 1381 215 25 104 chr15 27292134 27292538 -74087983 + MLT1A2 LTR MaLR 3 374 0 827 198 18 12 chr15 27292841 27293008 -74087513 + AluJb SINE Alu 122 289 -23 312 242 85 103 chr15 27293552 27293775 -74086746 + L1M2 LINE L1 1181 1399 -5450 614 147 55 156 chr15 27295253 27295491 -74085030 - MER20 DNA MER1_type -5 214 1 2440 57 0 10 chr15 27295699 27295997 -74084524 + AluY SINE Alu 1 295 -16 23 0 0 0 chr15 27296119 27296142 -74084379 + AT_rich Low_complexity Low_complexity 1 23 0 2373 70 13 16 chr15 27296566 27296878 -74083643 - AluSq SINE Alu -2 311 1 233 35 0 0 chr15 27297083 27297112 -74083409 - U7 snRNA snRNA -33 30 2 2655 217 96 51 chr15 27347147 27347907 -74032614 - L1M4 LINE L1 -846 5300 4507 249 324 10 0 chr15 27347904 27348006 -74032515 + HAL1 LINE L1 1506 1608 -899 * 629 316 210 14 chr15 27348017 27348603 -74031918 - L2 LINE L2 -1480 1834 1134 2000 119 24 0 chr15 27348653 27348947 -74031574 + AluSx SINE Alu 1 301 -11 369 302 148 20 chr15 27349135 27349284 -74031237 - MER5B DNA MER1_type -1 177 10 1542 78 59 4 chr15 27349802 27349831 -74030690 + L1M4c LINE L1 1447 1473 -4909 7236 65 4 0 chr15 27349831 27351289 -74029232 - L1PA5 LINE L1 0 6154 4722 1542 78 59 4 chr15 27351289 27351487 -74029034 + L1M4c LINE L1 1473 2172 -4210 808 273 98 52 chr15 27352132 27352808 -74027713 + L1ME3A LINE L1 5423 6163 -1 357 236 36 86 chr15 27353009 27353068 -74027453 + L2 LINE L2 2654 2714 -600 2168 107 17 0 chr15 27353068 27353368 -74027153 + AluSq SINE Alu 1 305 -8 357 236 36 86 chr15 27353368 27353448 -74027073 + L2 LINE L2 2714 2786 -528 232 282 87 36 chr15 27353523 27353718 -74026803 + L2 LINE L2 2873 3077 -195 188 280 229 17 chr15 27354067 27354185 -74026336 - L2 LINE L2 -5 3267 3125 34 42 0 0 chr15 27354246 27354294 -74026227 + AT_rich Low_complexity Low_complexity 1 48 0 35 24 0 0 chr15 27354346 27354388 -74026133 + AT_rich Low_complexity Low_complexity 1 42 0 186 143 79 16 chr15 27354395 27354521 -74026000 + (TA)n Simple_repeat Simple_repeat 1 134 0 336 294 17 25 chr15 27355139 27355258 -74025263 - MIR SINE MIR -33 229 112 2264 88 0 3 chr15 27355765 27356085 -74024436 + AluSg SINE Alu 1 310 0 327 303 30 71 chr15 27356466 27356862 -74023659 - L1MEd LINE L1 -4885 1234 855 1430 206 133 69 chr15 27357164 27357697 -74022824 - L1ME3A LINE L1 -6 6164 5598 2184 117 16 7 chr15 27359070 27359250 -74021271 - AluSx SINE Alu 0 312 126 216 0 0 0 chr15 27359250 27359274 -74021247 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2184 117 16 7 chr15 27359274 27359402 -74021119 - AluSx SINE Alu -186 126 1 5607 178 16 40 chr15 27360644 27362006 -74018515 - L1PA16 LINE L1 -301 5865 4572 2013 121 17 0 chr15 27362006 27362303 -74018218 - AluSq SINE Alu -11 302 1 5607 178 16 40 chr15 27362303 27362836 -74017685 - L1PA16 LINE L1 -1594 4572 4027 799 248 105 33 chr15 27362832 27363131 -74017390 - L1ME LINE L1 -377 5793 5458 * 2753 28 6 0 chr15 27363131 27363452 -74017069 - L1PA4 LINE L1 -2 6153 5831 799 248 105 33 chr15 27363452 27363543 -74016978 - L1ME LINE L1 -712 5458 5375 486 224 0 0 chr15 27363535 27363633 -74016888 + L1ME LINE L1 5710 5807 -363 * 889 189 33 6 chr15 27363631 27363811 -74016710 - L1ME LINE L1 -447 5723 5539 272 268 28 42 chr15 27363833 27363975 -74016546 - L1MC4 LINE L1 -1 8041 7902 297 243 19 19 chr15 27363989 27364092 -74016429 + (TA)n Simple_repeat Simple_repeat 2 104 0 4054 217 204 11 chr15 27364093 27365394 -74015127 - L1MC4 LINE L1 -124 7918 6367 678 268 36 13 chr15 27365405 27365629 -74014892 - L1ME2 LINE L1 -10 6154 5926 185 211 19 58 chr15 27366322 27366374 -74014147 + L3 LINE CR1 1519 1568 -9 227 79 26 0 chr15 27367085 27367123 -74013398 + (TA)n Simple_repeat Simple_repeat 2 40 0 314 269 254 8 chr15 27367123 27367253 -74013268 - MIR SINE MIR -67 195 34 522 0 0 0 chr15 27367781 27367839 -74012682 + (TG)n Simple_repeat Simple_repeat 2 59 0 2344 64 0 3 chr15 27368731 27369027 -74011494 - AluY SINE Alu -16 295 1 396 267 9 26 chr15 27369241 27369357 -74011164 + CT-rich Low_complexity Low_complexity 4 117 0 270 153 0 0 chr15 27369385 27369444 -74011077 + (CA)n Simple_repeat Simple_repeat 1 59 0 231 61 0 0 chr15 27369446 27369479 -74011042 + (TC)n Simple_repeat Simple_repeat 2 34 0 619 165 10 0 chr15 27369562 27369659 -74010862 + Charlie1a DNA MER1_type 1 98 -1357 6201 130 26 4 chr15 27369662 27370726 -74009795 + L1PB1 LINE L1 4704 5802 -349 425 51 39 13 chr15 27370726 27370804 -74009717 + (TA)n Simple_repeat Simple_repeat 2 81 0 6201 130 26 4 chr15 27370804 27371160 -74009361 + L1PB1 LINE L1 5802 6149 -2 237 271 0 14 chr15 27371160 27371230 -74009291 - L1M4 LINE L1 -2584 3562 3494 4073 190 92 18 chr15 27371235 27372177 -74008344 + Charlie1a DNA MER1_type 95 1106 -349 358 214 110 39 chr15 27372218 27372400 -74008121 - L1ME3A LINE L1 -209 5961 5767 1130 212 0 4 chr15 27372406 27372632 -74007889 - L1PA16 LINE L1 -8 6158 5934 1388 106 0 19 chr15 27372732 27372939 -74007582 - AluSq SINE Alu -110 203 1 686 254 139 0 chr15 27373430 27373639 -74006882 - MIR SINE MIR -4 258 21 2288 85 0 16 chr15 27374024 27374340 -74006181 + AluY SINE Alu 1 311 0 187 238 139 66 chr15 27374848 27374970 -74005551 - MIR SINE MIR -101 161 31 980 248 18 5 chr15 27375139 27375357 -74005164 - MER58A DNA MER1_type -2 222 2 1019 189 0 0 chr15 27375959 27376128 -74004393 - MLT1A1 LTR MaLR 0 365 197 383 174 0 29 chr15 27376132 27376201 -74004320 - MLT1A1 LTR MaLR -298 67 1 363 190 139 0 chr15 27377629 27377708 -74002813 - MLT1B LTR MaLR -300 90 1 181 324 28 14 chr15 27377958 27378029 -74002492 + MIR SINE MIR 78 149 -59 332 22 0 22 chr15 27379860 27379906 -74000615 + (TG)n Simple_repeat Simple_repeat 2 46 0 382 340 40 0 chr15 27380765 27380915 -73999606 + MIR SINE MIR 92 247 -15 3631 51 0 22 chr15 27385457 27385863 -73994658 + MLT2A1 LTR ERVL 1 397 -47 414 57 0 0 chr15 27385863 27385916 -73994605 + (CA)n Simple_repeat Simple_repeat 2 54 0 3631 51 0 22 chr15 27385916 27385963 -73994558 + MLT2A1 LTR ERVL 397 444 0 36 82 0 0 chr15 27386134 27386219 -73994302 + AT_rich Low_complexity Low_complexity 1 85 0 180 0 0 0 chr15 27386932 27386952 -73993569 + (T)n Simple_repeat Simple_repeat 1 20 0 1621 204 23 69 chr15 27388247 27388639 -73991882 - MLT1A2 LTR MaLR 0 374 1 4535 168 40 22 chr15 27391083 27391802 -73988719 + L1MB8 LINE L1 5097 5840 -338 2166 84 0 40 chr15 27391802 27392124 -73988397 + AluSc SINE Alu 1 309 0 4535 168 40 22 chr15 27392124 27392469 -73988052 + L1MB8 LINE L1 5840 6178 0 293 247 141 12 chr15 27392670 27392755 -73987766 + MIR SINE MIR 140 235 -27 243 241 56 19 chr15 27393411 27393573 -73986948 + (TA)n Simple_repeat Simple_repeat 1 168 0 241 146 0 21 chr15 27393822 27393870 -73986651 - L1MD3 LINE L1 -11 7984 7938 23 0 0 0 chr15 27394401 27394424 -73986097 + AT_rich Low_complexity Low_complexity 1 23 0 658 293 154 17 chr15 27394455 27394813 -73985708 - MLT1I LTR MaLR 0 409 3 377 328 34 28 chr15 27394818 27394995 -73985526 - L1ME LINE L1 -361 5760 5583 823 268 5 0 chr15 27395005 27395203 -73985318 - MLT1A1 LTR MaLR -3 362 164 752 204 11 43 chr15 27395223 27395409 -73985112 - MLT1A1 LTR MaLR -176 189 10 2219 62 20 14 chr15 27396546 27396838 -73983683 - AluY SINE Alu -17 294 1 239 285 72 62 chr15 27397676 27397867 -73982654 + MIR SINE MIR 17 206 -56 2106 130 0 0 chr15 27398423 27398722 -73981799 + AluSx SINE Alu 1 299 -13 381 346 73 16 chr15 27398838 27399222 -73981299 + MLT1I LTR MaLR 3 408 -1 559 256 45 0 chr15 27399551 27399707 -73980814 - MER103 DNA DNA -1 165 3 283 189 20 33 chr15 27401684 27401837 -73978684 + (CA)n Simple_repeat Simple_repeat 2 152 0 251 132 59 0 chr15 27401880 27401948 -73978573 + (CA)n Simple_repeat Simple_repeat 1 72 0 1115 208 4 73 chr15 27402558 27402832 -73977689 - MLT1B LTR MaLR -4 386 132 511 216 78 33 chr15 27402937 27403090 -73977431 - L1MC4 LINE L1 -296 7746 7587 5616 57 1 11 chr15 27403094 27403797 -73976724 - L1PA7 LINE L1 0 6154 5459 1859 150 134 28 chr15 27403953 27404340 -73976181 + MSTA LTR MaLR 1 428 0 2160 92 27 0 chr15 27407504 27407797 -73972724 - AluSg SINE Alu -8 302 2 853 296 92 40 chr15 27409711 27410377 -73970144 - HAL1b LINE L1 -295 1053 354 2139 118 5 62 chr15 27410444 27410818 -73969703 - THE1A LTR MaLR -2 353 1 11769 99 5 0 chr15 27410818 27412390 -73968131 - THE1A-int LTR MaLR 0 1580 1 2011 136 21 51 chr15 27412390 27412765 -73967756 - THE1B LTR MaLR 0 364 1 1952 150 0 27 chr15 27412892 27413192 -73967329 + AluSx SINE Alu 1 292 -20 826 176 96 0 chr15 27413575 27413763 -73966758 - L1MA6 LINE L1 -4 6296 6091 183 277 0 0 chr15 27414258 27414305 -73966216 + L2 LINE L2 3267 3313 0 227 289 105 9 chr15 27415634 27415748 -73964773 - MIR SINE MIR -26 236 112 1443 232 72 5 chr15 27416168 27416582 -73963939 + L1ME2 LINE L1 4740 5181 -965 1316 271 119 18 chr15 27416586 27417338 -73963183 + L1ME2 LINE L1 5282 6137 -27 3575 158 75 7 chr15 27417691 27418368 -73962153 - L1MB2 LINE L1 -7 6164 5442 183 129 0 0 chr15 27419515 27419546 -73960975 + (CAGAA)n Simple_repeat Simple_repeat 3 33 0 204 40 0 0 chr15 27419639 27419664 -73960857 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 809 208 27 6 chr15 27420459 27420642 -73959879 - MER53 DNA DNA 0 189 3 543 216 23 11 chr15 27420894 27421070 -73959451 + (CATA)n Simple_repeat Simple_repeat 1 178 0 1332 119 75 40 chr15 27421086 27421312 -73959209 - MER46A DNA MER2_type -2 234 1 4708 237 60 15 chr15 27421746 27422494 -73958027 + L1M4 LINE L1 3623 4336 -1810 2285 93 0 59 chr15 27422494 27422816 -73957705 + AluSg SINE Alu 1 303 -7 4708 237 60 15 chr15 27422816 27423542 -73956979 + L1M4 LINE L1 4336 5163 -983 230 343 0 0 chr15 27424146 27424216 -73956305 + L2 LINE L2 2930 2999 -314 408 318 50 22 chr15 27424251 27424528 -73955993 + LTR40c LTR ERVL 68 352 -113 1701 188 15 52 chr15 27425001 27425406 -73955115 + MLT1B LTR MaLR 1 390 0 181 258 0 16 chr15 27425678 27425740 -73954781 - L2 LINE L2 -73 3240 3180 677 284 23 23 chr15 27425763 27425981 -73954540 + HsTC2 DNA Tc2 296 513 -1385 307 269 107 61 chr15 27426116 27426208 -73954313 + HsTC2 DNA Tc2 1631 1717 -181 2210 114 3 0 chr15 27426208 27426497 -73954024 + AluSx SINE Alu 1 290 -22 307 269 107 61 chr15 27426497 27426601 -73953920 + HsTC2 DNA Tc2 1717 1836 -62 1953 177 34 46 chr15 27426632 27426981 -73953540 + MLT2D LTR ERVL 4 349 -65 561 63 32 0 chr15 27426981 27427076 -73953445 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 1953 177 34 46 chr15 27427076 27427139 -73953382 + MLT2D LTR ERVL 349 411 -3 232 247 52 13 chr15 27427412 27427489 -73953032 - MIR SINE MIR -116 146 67 426 263 15 23 chr15 27428557 27428690 -73951831 + L2 LINE L2 3182 3313 0 439 301 160 19 chr15 27428929 27429526 -73950995 + L1M4 LINE L1 4741 5421 -749 403 301 205 23 chr15 27430684 27431549 -73948972 - L2 LINE L2 -351 2963 1942 2483 84 0 0 chr15 27431915 27432223 -73948298 + AluSc SINE Alu 1 308 -1 654 166 31 43 chr15 27432877 27433040 -73947481 + MER5A DNA MER1_type 6 166 -23 568 68 14 0 chr15 27433347 27433420 -73947101 - AluSp SINE Alu -174 139 66 838 80 26 0 chr15 27433420 27433533 -73946988 + AluSp/q SINE Alu 187 302 -11 294 307 37 49 chr15 27434241 27434404 -73946117 + MIR SINE MIR 33 193 -69 258 203 51 0 chr15 27434908 27434967 -73945554 + MLT1K LTR MaLR 517 578 -10 456 247 124 34 chr15 27436927 27436965 -73943556 - MIR SINE MIR 0 262 229 2392 125 89 0 chr15 27436965 27437358 -73943163 - MSTC LTR MaLR 0 428 1 456 247 124 34 chr15 27437358 27437497 -73943024 - MIR SINE MIR -33 229 69 229 287 91 42 chr15 27437639 27437782 -73942739 - MLT1J1 LTR MaLR -164 282 133 3945 205 70 3 chr15 27438554 27439428 -73941093 - Charlie1a DNA MER1_type -4 1451 520 529 300 70 36 chr15 27439535 27439700 -73940821 - L1M4 LINE L1 -842 5304 5146 2029 149 0 0 chr15 27439700 27440002 -73940519 - AluSx SINE Alu -9 303 2 529 300 70 36 chr15 27440002 27440223 -73940298 - L1M4 LINE L1 -1000 5146 4905 1130 213 125 86 chr15 27441978 27442395 -73938126 - Charlie1a DNA MER1_type -969 486 54 699 291 124 25 chr15 27442551 27443025 -73937496 + L2 LINE L2 1992 2512 -802 193 254 42 42 chr15 27443304 27443375 -73937146 + L2 LINE L2 2866 2936 -336 1248 243 157 10 chr15 27444247 27444703 -73935818 - MLT1G LTR MaLR -96 494 1 294 73 0 0 chr15 27447025 27447066 -73933455 + (TG)n Simple_repeat Simple_repeat 1 41 0 1274 211 73 10 chr15 27448450 27448780 -73931741 + MLT1A1 LTR MaLR 1 362 -3 745 11 0 0 chr15 27448849 27448936 -73931585 - L1PA3 LINE L1 0 6155 6069 394 314 197 20 chr15 27450204 27450503 -73930018 + L2 LINE L2 2962 3313 0 270 0 0 0 chr15 27450688 27450718 -73929803 + (TG)n Simple_repeat Simple_repeat 2 31 0 197 337 44 12 chr15 27452072 27452176 -73928345 - MIR SINE MIR -47 161 55 1827 160 45 15 chr15 27452193 27452530 -73927991 + MLT1A1 LTR MaLR 14 360 -5 229 270 0 0 chr15 27452713 27452787 -73927734 + (TA)n Simple_repeat Simple_repeat 2 75 0 611 273 35 0 chr15 27453127 27453299 -73927222 - MER5B DNA MER1_type 0 178 1 298 282 40 24 chr15 27453396 27453520 -73927001 - L2 LINE L2 -30 3283 3158 2871 3 0 0 chr15 27453535 27453836 -73926685 - AluYa5 SINE Alu -10 301 1 649 308 68 39 chr15 27454192 27454530 -73925991 - L2 LINE L2 -686 2628 2281 3422 254 70 17 chr15 27454603 27455824 -73924697 - L1M4 LINE L1 -1847 4299 3015 1704 223 44 24 chr15 27455828 27456286 -73924235 - L1ME1 LINE L1 0 6426 5960 417 223 11 11 chr15 27456386 27456480 -73924041 - L1ME1 LINE L1 -507 5919 5826 1112 234 57 29 chr15 27456485 27457170 -73923351 - L1ME1 LINE L1 -3653 2753 2059 1956 153 14 0 chr15 27457196 27457490 -73923031 - AluJb SINE Alu -13 299 2 318 315 31 8 chr15 27460799 27460926 -73919595 - L2 LINE L2 -4 3309 3180 585 249 46 23 chr15 27461032 27461205 -73919316 + MER5B DNA MER1_type 2 178 0 2693 225 92 35 chr15 27461724 27462556 -73917965 - L1ME1 LINE L1 -4411 1995 1109 2131 114 0 0 chr15 27462556 27462867 -73917654 - AluSx SINE Alu 0 311 1 2693 225 92 35 chr15 27462867 27463220 -73917301 - L1ME1 LINE L1 -5297 1109 777 2861 157 74 9 chr15 27463711 27464266 -73916255 - L1MB8 LINE L1 -16 6162 5572 844 231 10 10 chr15 27464605 27464804 -73915717 + MER96B DNA MER1_type? 1 199 -218 290 331 131 19 chr15 27465039 27465199 -73915322 + MIR SINE MIR 22 199 -63 3428 224 80 47 chr15 27466636 27467958 -73912563 - L1MC5 LINE L1 -34 7927 6551 503 331 35 26 chr15 27468088 27468399 -73912122 - L1 LINE L1 -1815 4331 4018 423 0 0 0 chr15 27468411 27468458 -73912063 + (CA)n Simple_repeat Simple_repeat 2 48 0 3141 56 24 0 chr15 27468469 27468846 -73911675 - L1PA10 LINE L1 -15 6153 5768 14661 180 30 9 chr15 27468851 27474363 -73906158 - L1PB1 LINE L1 0 6867 1093 3546 221 66 10 chr15 27474367 27475324 -73905197 - L1PB1 LINE L1 -5818 1045 36 4150 101 32 8 chr15 27475334 27475888 -73904633 - L1P4 LINE L1 -387 5781 5196 2592 30 0 13 chr15 27475888 27476187 -73904334 + AluY SINE Alu 1 295 -16 4150 101 32 8 chr15 27476187 27476675 -73903846 - L1P4 LINE L1 -972 5196 4721 274 303 32 88 chr15 27476745 27476938 -73903583 - L1 LINE L1 -2251 3895 3693 1955 121 4 0 chr15 27476938 27477211 -73903310 - L1PA15 LINE L1 0 6165 5892 274 303 32 88 chr15 27477211 27477574 -73902947 - L1 LINE L1 -2453 3693 3370 403 205 36 0 chr15 27478219 27478302 -73902219 - Tigger5 DNA MER2_type 0 2323 2238 340 192 14 14 chr15 27478352 27478425 -73902096 - Tigger5 DNA MER2_type 0 2323 2251 240 253 89 79 chr15 27480042 27480232 -73900289 + MLT1K LTR MaLR 395 586 -2 318 259 62 18 chr15 27480260 27480372 -73900149 + L1 LINE L1 3665 3781 -2365 256 279 87 10 chr15 27480440 27480544 -73899977 + MLT1J LTR MaLR 342 453 -58 251 250 0 62 chr15 27480739 27480819 -73899702 - L1ME LINE L1 -298 5933 5859 5289 244 64 80 chr15 27480866 27483436 -73897085 - L1MEc LINE L1 -374 5859 3281 852 170 0 0 chr15 27483436 27483577 -73896944 - FLAM_C SINE Alu -2 141 1 5289 244 64 80 chr15 27483577 27484628 -73895893 - L1MEc LINE L1 -2952 3281 2215 439 278 116 37 chr15 27484633 27485638 -73894883 - L1MDa LINE L1 -2082 4458 3254 264 221 22 177 chr15 27485688 27485774 -73894747 - L1MC5 LINE L1 -50 7911 7866 782 54 0 0 chr15 27485774 27485866 -73894655 + L1PA6 LINE L1 6056 6147 -7 264 221 22 177 chr15 27485866 27485960 -73894561 - L1MC5 LINE L1 -95 7866 7759 * 815 252 67 52 chr15 27485956 27486650 -73893871 - L1MDa LINE L1 -3253 3287 2403 267 315 69 72 chr15 27486969 27487315 -73893206 + L2 LINE L2 2945 3289 -24 1690 148 81 0 chr15 27487325 27487596 -73892925 + AluSx SINE Alu 1 293 -19 186 43 0 0 chr15 27487793 27487816 -73892705 + (CATTT)n Simple_repeat Simple_repeat 2 24 0 214 289 70 35 chr15 27488020 27488162 -73892359 + MER5A DNA MER1_type 2 148 -41 286 316 114 42 chr15 27489404 27489923 -73890598 - L1ME LINE L1 -340 5822 5267 1836 136 4 0 chr15 27490099 27490356 -73890165 + AluSx SINE Alu 23 280 -32 30 43 0 43 chr15 27490417 27490487 -73890034 + AT_rich Low_complexity Low_complexity 1 67 0 351 265 10 20 chr15 27490790 27490892 -73889629 - L1MC5 LINE L1 -48 7913 7813 7091 70 12 0 chr15 27490982 27491641 -73888880 - L1PA13 LINE L1 -4 6159 5510 2176 95 0 41 chr15 27491641 27491957 -73888564 - AluSx SINE Alu -9 303 1 7091 70 12 0 chr15 27491957 27493098 -73887423 - L1PA13 LINE L1 -653 5510 4337 586 295 219 26 chr15 27493504 27493806 -73886715 - L2 LINE L2 -1 3271 2912 212 263 40 0 chr15 27493956 27494032 -73886489 - MIR SINE MIR -26 236 158 4161 125 39 3 chr15 27495310 27495933 -73884588 - L1MC1 LINE L1 0 6333 5689 368 337 12 0 chr15 27496429 27496563 -73883958 - MIR SINE MIR -55 153 17 1759 167 35 12 chr15 27496903 27497245 -73883276 - MLT1A1 LTR MaLR -15 350 1 217 281 109 0 chr15 27497821 27497885 -73882636 - MIR3 SINE MIR -129 79 9 1821 130 87 34 chr15 27497936 27498258 -73882263 - MER44D DNA MER2_type 0 609 1 255 318 46 107 chr15 27498295 27498556 -73881965 - L2 LINE L2 -35 3237 2993 874 359 105 26 chr15 27498773 27499581 -73880940 - L2 LINE L2 -611 2703 1832 328 228 65 76 chr15 27499581 27499765 -73880756 + L1MC4 LINE L1 4498 4679 -1467 180 111 0 0 chr15 27500710 27500737 -73879784 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 321 26 0 0 chr15 27500830 27500868 -73879653 + (TG)n Simple_repeat Simple_repeat 2 39 0 410 324 58 6 chr15 27500967 27501140 -73879381 - L2 LINE L2 -1056 2258 2077 324 233 58 0 chr15 27501148 27501234 -73879287 - L2 LINE L2 -1036 2278 2188 1008 275 90 14 chr15 27501247 27501614 -73878907 - MLT1I LTR MaLR -14 395 1 651 274 74 55 chr15 27503038 27503619 -73876902 + L1MC4 LINE L1 5268 5647 -517 22 0 0 0 chr15 27503932 27503954 -73876567 + GC_rich Low_complexity Low_complexity 1 22 0 246 339 102 0 chr15 27505384 27505502 -73875019 - L2 LINE L2 -11 3261 3132 3529 126 46 59 chr15 27506179 27506651 -73873870 - MER7C DNA MER2_type -2426 602 138 2366 64 7 3 chr15 27506651 27506947 -73873574 + AluY SINE Alu 3 299 -12 3529 126 46 59 chr15 27506947 27507084 -73873437 - MER7C DNA MER2_type -2890 138 1 1237 271 80 51 chr15 27507431 27508041 -73872480 - L2 LINE L2 -377 2937 2310 856 184 48 0 chr15 27508115 27508262 -73872259 + FRAM SINE Alu 9 162 -14 1595 237 68 44 chr15 27508800 27509344 -73871177 + L1MC4 LINE L1 6980 7536 -506 796 42 0 0 chr15 27509394 27509489 -73871032 + L1P2 LINE L1 5441 5535 -619 254 302 90 32 chr15 27509589 27509778 -73870743 + L1M4 LINE L1 3882 4081 -2065 356 181 168 32 chr15 27510053 27510208 -73870313 + L1M4 LINE L1 4524 4699 -1447 257 270 14 0 chr15 27510373 27510447 -73870074 + MLT1L LTR MaLR 3 77 -538 21 0 0 0 chr15 27510922 27510943 -73869578 + AT_rich Low_complexity Low_complexity 1 21 0 648 293 105 36 chr15 27511152 27511514 -73869007 + MLT1J2 LTR MaLR 62 448 -2 2356 112 24 37 chr15 27511555 27511931 -73868590 + THE1C LTR MaLR 3 373 -2 10984 101 14 33 chr15 27511933 27513544 -73866977 + THE1C-int LTR MaLR 1 1580 0 2013 103 44 82 chr15 27513546 27513934 -73866587 + THE1C LTR MaLR 3 375 0 266 299 53 66 chr15 27514082 27514326 -73866195 + L1MC/D LINE L1 5303 5543 -2265 356 278 20 13 chr15 27515149 27515300 -73865221 + (TCTA)n Simple_repeat Simple_repeat 2 153 0 252 170 0 0 chr15 27515438 27515491 -73865030 + (TCCA)n Simple_repeat Simple_repeat 4 56 0 381 255 5 54 chr15 27515500 27515684 -73864837 + (TCTG)n Simple_repeat Simple_repeat 4 178 0 1576 244 111 12 chr15 27516361 27516857 -73863664 + L1M4 LINE L1 4463 5007 -1139 187 254 6 36 chr15 27516885 27517050 -73863471 + (TG)n Simple_repeat Simple_repeat 1 160 0 203 138 0 0 chr15 27517719 27517748 -73862773 + L2 LINE L2 3216 3244 -28 275 125 0 0 chr15 27517762 27517810 -73862711 + L1MA3 LINE L1 6258 6305 0 1596 231 97 43 chr15 27518513 27519051 -73861470 - MLT1F1 LTR MaLR 0 567 1 424 216 69 99 chr15 27519366 27519508 -73861013 + LTR37B LTR ERV1 185 319 -149 2305 63 0 46 chr15 27519508 27519810 -73860711 + AluY SINE Alu 1 288 -23 424 216 69 99 chr15 27519810 27519899 -73860622 + LTR37B LTR ERV1 319 409 -59 210 302 16 93 chr15 27521705 27521834 -73858687 - MIR SINE MIR -130 132 14 835 286 101 49 chr15 27521951 27522078 -73858443 + L1MC4 LINE L1 7126 7245 -797 2379 88 0 7 chr15 27522078 27522374 -73858147 + AluSc SINE Alu 1 294 -15 835 286 101 49 chr15 27522374 27523025 -73857496 + L1MC4 LINE L1 7245 8042 0 40 59 0 0 chr15 27523701 27523769 -73856752 + AT_rich Low_complexity Low_complexity 1 68 0 21 71 0 0 chr15 27524162 27524204 -73856317 + AT_rich Low_complexity Low_complexity 1 42 0 2656 192 15 65 chr15 27524561 27525238 -73855283 + L1M4 LINE L1 4658 5300 -846 * 5143 143 37 3 chr15 27525232 27526800 -73853721 + L1MA4 LINE L1 4486 6110 -190 3572 144 29 53 chr15 27528624 27528991 -73851530 - L1MA8 LINE L1 -155 6136 5793 2566 50 3 0 chr15 27528991 27529288 -73851233 - AluY SINE Alu -13 298 1 3572 144 29 53 chr15 27529288 27529643 -73850878 - L1MA8 LINE L1 -498 5793 5431 205 287 78 30 chr15 27531768 27531936 -73848585 - MIR SINE MIR -11 251 75 22 0 0 0 chr15 27532283 27532305 -73848216 + AT_rich Low_complexity Low_complexity 1 22 0 628 230 40 0 chr15 27532568 27532716 -73847805 + MER5A DNA MER1_type 1 154 -35 2561 61 0 0 chr15 27533226 27533523 -73846998 - AluY SINE Alu -14 297 1 222 258 0 0 chr15 27534666 27534728 -73845793 + CT-rich Low_complexity Low_complexity 1 62 0 2524 211 42 24 chr15 27534906 27535533 -73844988 + L1MC4a LINE L1 7159 7796 -12 37 39 0 0 chr15 27535533 27535584 -73844937 + AT_rich Low_complexity Low_complexity 1 51 0 7044 207 65 10 chr15 27535587 27537179 -73843342 + L1MD1 LINE L1 3270 5083 -1159 231 36 0 0 chr15 27537179 27537207 -73843314 + (GAAA)n Simple_repeat Simple_repeat 3 30 0 7044 207 65 10 chr15 27537207 27538434 -73842087 + L1MD1 LINE L1 5083 6241 -1 273 250 26 0 chr15 27539098 27539174 -73841347 + MER5A DNA MER1_type 29 106 -83 204 226 19 0 chr15 27539233 27539286 -73841235 + MIR SINE MIR 133 186 -76 627 227 129 12 chr15 27539970 27540133 -73840388 + MER58A DNA MER1_type 42 223 -1 256 373 35 35 chr15 27540142 27540343 -73840178 - L3 LINE CR1 -920 657 457 407 302 38 19 chr15 27540351 27540510 -73840011 - MIR3 SINE MIR -15 193 32 361 278 97 36 chr15 27542280 27542591 -73837930 + L1ME4a LINE L1 5396 5726 -568 267 313 12 0 chr15 27543929 27544009 -73836512 + (TA)n Simple_repeat Simple_repeat 2 82 0 275 294 76 0 chr15 27544268 27544387 -73836134 + L1ME4a LINE L1 5991 6118 -3 3175 198 75 11 chr15 27544812 27545569 -73834952 + L1PB1 LINE L1 240 1045 -5818 13833 189 46 11 chr15 27545573 27551000 -73829521 + L1PB1 LINE L1 1093 6866 -1 2838 77 26 3 chr15 27551006 27551397 -73829124 + L1PA10 LINE L1 5768 6167 -1 204 40 0 0 chr15 27551399 27551424 -73829097 + (TG)n Simple_repeat Simple_repeat 2 26 0 402 328 38 29 chr15 27551432 27551746 -73828775 + L1 LINE L1 4015 4331 -1815 3249 222 84 49 chr15 27551876 27553196 -73827325 + L1MC5 LINE L1 6551 7927 -34 248 317 145 21 chr15 27554636 27554781 -73825740 - MIR SINE MIR -78 184 22 888 228 14 9 chr15 27555033 27555244 -73825277 - MER96B DNA MER1_type? -205 212 1 1954 117 0 53 chr15 27555568 27555915 -73824606 - AluSq SINE Alu 0 331 1 496 251 179 0 chr15 27556406 27556601 -73823920 - MIR SINE MIR -4 258 29 2374 87 0 19 chr15 27556996 27557305 -73823216 + AluY SINE Alu 1 303 -8 979 248 18 5 chr15 27558095 27558313 -73822208 - MER58A DNA MER1_type -2 222 2 1009 189 0 0 chr15 27558915 27559084 -73821437 - MLT1A1 LTR MaLR 0 365 197 398 159 0 29 chr15 27559088 27559157 -73821364 - MLT1A1 LTR MaLR -298 67 1 299 347 67 22 chr15 27560641 27560868 -73819653 + MIR SINE MIR 4 248 -14 4075 243 61 22 chr15 27560999 27561476 -73819045 - L1ME1 LINE L1 -19 6407 5950 2173 102 13 29 chr15 27561476 27561791 -73818730 - AluSg SINE Alu 0 310 1 4075 243 61 22 chr15 27561791 27563137 -73817384 - L1ME1 LINE L1 -476 5950 4482 234 0 0 0 chr15 27563137 27563163 -73817358 + (TG)n Simple_repeat Simple_repeat 2 27 0 4075 243 61 22 chr15 27563163 27563479 -73817042 - L1ME1 LINE L1 -1944 4482 4180 1238 253 83 50 chr15 27563593 27564173 -73816348 - L1ME1 LINE L1 -4988 1421 823 4018 172 21 32 chr15 27565487 27565671 -73814850 - LTR39 LTR ERV1 0 783 599 2205 128 3 0 chr15 27565671 27565977 -73814544 + AluSx SINE Alu 1 307 -5 4018 172 21 32 chr15 27565977 27566583 -73813938 - LTR39 LTR ERV1 -184 599 1 212 244 37 49 chr15 27566879 27566961 -73813560 + L2 LINE L2 3141 3221 -51 547 251 84 15 chr15 27567052 27567255 -73813266 - L2 LINE L2 -148 3165 2949 2421 107 0 0 chr15 27567979 27568289 -73812232 + AluSg SINE Alu 1 310 0 198 167 0 0 chr15 27568290 27568326 -73812195 + GA-rich Low_complexity Low_complexity 1 36 0 380 195 61 12 chr15 27568875 27568957 -73811564 - MER58A DNA MER1_type -17 90 5 647 260 110 34 chr15 27568961 27569315 -73811206 + L1MC5 LINE L1 7498 7878 -83 2056 264 61 26 chr15 27569339 27569953 -73810568 + L1ME1 LINE L1 8 648 -5748 1575 204 10 10 chr15 27569953 27570257 -73810264 + AluJo SINE Alu 1 304 -8 2056 264 61 26 chr15 27570257 27570293 -73810228 + L1ME1 LINE L1 648 681 -5715 1241 235 81 86 chr15 27570317 27570928 -73809593 - LTR19C LTR ERV1 0 779 1 1435 224 27 68 chr15 27570932 27571445 -73809076 + L1ME1 LINE L1 699 1183 -5213 754 208 0 8 chr15 27571445 27571575 -73808946 + FLAM_A SINE Alu 1 129 -4 1435 224 27 68 chr15 27571575 27571698 -73808823 + L1ME1 LINE L1 1183 1309 -5087 453 265 41 6 chr15 27571687 27571857 -73808664 + L1ME1 LINE L1 3053 3228 -2987 * 5639 216 43 100 chr15 27571859 27573426 -73807095 + L1ME1 LINE L1 3152 4807 -1428 2039 126 37 37 chr15 27573426 27573800 -73806721 - THE1C LTR MaLR -1 374 1 5639 216 43 100 chr15 27573800 27574377 -73806144 + L1ME1 LINE L1 4807 5415 -820 2039 95 82 0 chr15 27574377 27574682 -73805839 - L1PB1 LINE L1 0 6151 5822 5639 216 43 100 chr15 27574682 27575663 -73804858 + L1ME1 LINE L1 5415 6094 -141 2033 107 52 0 chr15 27575663 27575953 -73804568 - AluY SINE Alu -6 305 1 10224 102 46 23 chr15 27576003 27576111 -73804410 - Tigger1 DNA MER2_type -4 2414 2310 1628 163 7 52 chr15 27576111 27576417 -73804104 + AluJb SINE Alu 1 292 -20 10224 102 46 23 chr15 27576417 27577885 -73802636 - Tigger1 DNA MER2_type -108 2310 802 2536 159 28 35 chr15 27577894 27578352 -73802169 - Tigger1 DNA MER2_type -1963 455 1 235 198 99 12 chr15 27578352 27578433 -73802088 + L1MA10 LINE L1 6243 6330 -4 323 284 43 9 chr15 27579044 27579160 -73801361 + MIR3 SINE MIR 56 175 -33 4576 167 36 19 chr15 27580168 27581053 -73799468 + MER54A LTR ERVL 2 901 0 1863 170 0 0 chr15 27581187 27581476 -73799045 + AluJo SINE Alu 1 289 -23 269 250 62 0 chr15 27581612 27581708 -73798813 - L1MC4 LINE L1 -17 8025 7924 222 259 0 0 chr15 27581708 27581762 -73798759 + (TCCA)n Simple_repeat Simple_repeat 1 54 0 1961 245 26 83 chr15 27581874 27582641 -73797880 - L1ME2 LINE L1 -14 6150 5428 22 0 0 0 chr15 27582641 27582663 -73797858 + AT_rich Low_complexity Low_complexity 1 22 0 1126 222 162 55 chr15 27582695 27583182 -73797339 - MLT1F LTR MaLR 0 542 4 260 284 59 0 chr15 27584052 27584154 -73796367 - L1ME3A LINE L1 -8 6162 6055 42368 53 6 18 chr15 27584169 27590419 -73790102 + L1PA4 LINE L1 11 6177 0 2281 107 7 3 chr15 27590555 27590855 -73789666 - AluSx SINE Alu -11 301 1 1811 105 47 0 chr15 27590886 27591144 -73789377 - MSTB1 LTR MaLR 0 432 163 203 79 26 0 chr15 27591159 27591197 -73789324 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1161 154 48 92 chr15 27591198 27591470 -73789051 - AluSp SINE Alu -32 281 22 923 145 45 99 chr15 27591470 27591691 -73788830 + LTR15 LTR ERV1 10 218 -275 2429 156 103 54 chr15 27591691 27592308 -73788213 - pTR5 LTR ERV1 -670 1768 1176 897 220 62 56 chr15 27592308 27592516 -73788005 + L1MEc LINE L1 1649 1861 -4535 1716 191 0 17 chr15 27592516 27592814 -73787707 - AluJb SINE Alu -19 293 1 897 220 62 56 chr15 27592814 27592942 -73787579 + L1MEc LINE L1 1861 1987 -4409 2268 99 3 0 chr15 27593093 27593387 -73787134 + AluSg SINE Alu 1 295 -15 22 0 0 0 chr15 27593816 27593838 -73786683 + AT_rich Low_complexity Low_complexity 1 22 0 310 278 183 33 chr15 27593926 27594167 -73786354 - L1M4 LINE L1 -1313 4833 4557 314 333 56 20 chr15 27594496 27594691 -73785830 - L1M4 LINE L1 -3104 3042 2841 746 167 0 53 chr15 27594787 27594937 -73785584 + FLAM_C SINE Alu 2 143 0 367 125 75 25 chr15 27594957 27595037 -73785484 - L1MB3 LINE L1 -17 6166 6083 324 0 0 0 chr15 27595145 27595181 -73785340 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 1796 176 0 3 chr15 27595181 27595465 -73785056 - AluJo SINE Alu -29 283 1 685 169 0 25 chr15 27595465 27595583 -73784938 - FRAM SINE Alu -6 170 56 682 235 84 50 chr15 27595856 27596154 -73784367 + L1MC4a LINE L1 5702 6009 -1799 2303 84 0 7 chr15 27596772 27597068 -73783453 - AluY SINE Alu -17 294 1 461 230 120 40 chr15 27597246 27597712 -73782809 - L1ME LINE L1 -469 5701 5188 609 173 17 34 chr15 27597721 27597900 -73782621 + CT-rich Low_complexity Low_complexity 2 177 0 1491 204 4 4 chr15 27598013 27598288 -73782233 - AluJo SINE Alu -37 275 1 532 236 114 7 chr15 27599030 27599139 -73781382 - MER5A DNA MER1_type -33 156 27 252 0 0 0 chr15 27599139 27599167 -73781354 + (CTG)n Simple_repeat Simple_repeat 2 29 0 532 236 114 7 chr15 27599167 27599197 -73781324 - MER5A DNA MER1_type -162 27 2 2315 107 0 0 chr15 27599531 27599831 -73780690 - AluSx SINE Alu -12 300 1 312 91 0 0 chr15 27600178 27600222 -73780299 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 2411 82 7 7 chr15 27602509 27602815 -73777706 + AluY SINE Alu 1 306 -5 310 287 73 7 chr15 27602822 27602958 -73777563 + MIR SINE MIR 48 192 -70 246 338 119 0 chr15 27603887 27604038 -73776483 + MIR3 SINE MIR 31 199 -9 228 307 79 18 chr15 27604045 27604159 -73776362 + L2 LINE L2 3188 3308 -5 431 233 103 27 chr15 27605776 27605922 -73774599 + MIR SINE MIR 36 192 -70 180 235 78 0 chr15 27606944 27606995 -73773526 + MIR SINE MIR 95 149 -59 207 0 0 0 chr15 27607130 27607153 -73773368 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 183 200 0 0 chr15 27607482 27607522 -73772999 + MIR SINE MIR 106 145 -117 1921 132 0 45 chr15 27608049 27608359 -73772162 + AluSx SINE Alu 2 297 -15 225 250 102 0 chr15 27608410 27608498 -73772023 + MIR SINE MIR 96 192 -70 943 169 0 18 chr15 27609204 27609370 -73771151 + 7SLRNA srpRNA srpRNA 95 257 -63 207 69 0 0 chr15 27610494 27610523 -73769998 + (TGGGGG)n Simple_repeat Simple_repeat 6 34 0 394 178 40 103 chr15 27610864 27611038 -73769483 - L1MC5 LINE L1 -141 7820 7658 1288 144 9 107 chr15 27611696 27611924 -73768597 - AluJb SINE Alu 0 312 128 1687 164 0 29 chr15 27611924 27612236 -73768285 + AluSp SINE Alu 1 303 -10 1288 144 9 107 chr15 27612236 27612353 -73768168 - AluJb SINE Alu -184 128 1 1578 168 6 50 chr15 27612381 27612702 -73767819 + AluSp SINE Alu 1 307 -6 590 159 9 9 chr15 27612704 27612817 -73767704 - AluJb SINE Alu -198 114 2 1551 168 6 47 chr15 27612846 27613167 -73767354 + AluSp SINE Alu 1 308 -5 780 219 8 80 chr15 27613192 27613306 -73767215 - AluJb SINE Alu -90 222 132 1696 176 3 3 chr15 27613306 27613618 -73766903 + AluSp SINE Alu 1 312 -1 780 219 8 80 chr15 27613618 27613741 -73766780 - AluJb SINE Alu -180 132 2 264 108 0 0 chr15 27613770 27613807 -73766714 + AluSp SINE Alu 1 37 -265 2475 164 38 19 chr15 27613838 27614314 -73766207 - LTR15 LTR ERV1 -7 486 2 838 129 5 118 chr15 27614315 27614501 -73766020 + AluSp SINE Alu 28 192 -121 392 254 124 25 chr15 27614502 27614549 -73765972 - L1MC4a LINE L1 -1866 5942 5901 1429 181 3 60 chr15 27614549 27614863 -73765658 - AluJb SINE Alu -16 296 1 392 254 124 25 chr15 27614863 27615016 -73765505 - L1MC4a LINE L1 -1907 5901 5722 314 236 133 33 chr15 27615126 27615358 -73765163 + L1ME4a LINE L1 5255 5395 -767 349 299 64 34 chr15 27615428 27615705 -73764816 + L1ME4a LINE L1 5650 5934 -206 411 84 0 99 chr15 27615753 27615824 -73764697 + AluSx SINE Alu 2 65 -248 7581 92 8 21 chr15 27615824 27616893 -73763628 - MER11C LTR ERVK -15 1056 1 1568 117 95 0 chr15 27616893 27617124 -73763397 + AluSx SINE Alu 49 301 -11 280 239 287 30 chr15 27617447 27617614 -73762907 + L2 LINE L2 3084 3293 -20 914 173 25 27 chr15 27618254 27618441 -73762080 - L1MC3 LINE L1 -2 7765 6196 350 246 146 15 chr15 27619659 27619789 -73760732 + MER103 DNA DNA 8 154 -12 231 231 147 22 chr15 27620020 27620155 -73760366 + MER5A DNA MER1_type 3 167 -15 2374 54 0 0 chr15 27620473 27620789 -73759732 - AluY SINE Alu 0 316 1 328 303 86 12 chr15 27621169 27621331 -73759190 + L1ME3A LINE L1 4102 4275 -1871 2512 239 40 29 chr15 27623286 27624044 -73756477 + L1ME3A LINE L1 5403 6168 -2 180 0 0 0 chr15 27624229 27624249 -73756272 + (TTCCC)n Simple_repeat Simple_repeat 5 24 0 2331 75 0 3 chr15 27624885 27625188 -73755333 - AluY SINE Alu 0 302 1 2345 65 41 0 chr15 27625927 27626221 -73754300 - AluY SINE Alu -5 306 1 3258 220 62 52 chr15 27627406 27627676 -73752845 - L1ME1 LINE L1 -5 6161 5895 2023 147 0 3 chr15 27627676 27627989 -73752532 - AluJb SINE Alu 0 312 1 3258 220 62 52 chr15 27627989 27629574 -73750947 - L1ME1 LINE L1 -271 5895 4295 204 300 0 0 chr15 27629667 27629727 -73750794 + MIR SINE MIR 59 118 -144 2527 201 117 23 chr15 27629827 27631072 -73749449 - L1MD2 LINE L1 -449 5910 4552 2432 60 10 3 chr15 27632962 27633263 -73747258 + AluY SINE Alu 1 303 -8 522 297 116 12 chr15 27633280 27633539 -73746982 + MER46C DNA MER2_type 2 287 -51 258 262 16 0 chr15 27634397 27634458 -73746063 + MER46C DNA MER2_type 1 62 -276 256 218 52 56 chr15 27634818 27634944 -73745577 - MIR SINE MIR -70 138 17 22 0 0 0 chr15 27635209 27635231 -73745290 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 27635451 27635473 -73745048 + AT_rich Low_complexity Low_complexity 1 22 0 2117 131 0 3 chr15 27635835 27636133 -73744388 - AluSx SINE Alu -11 301 5 2291 99 3 3 chr15 27636144 27636447 -73744074 - AluSp SINE Alu -10 303 1 959 217 57 62 chr15 27637498 27637886 -73742635 - L1MC5 LINE L1 -724 7237 6876 1127 136 0 0 chr15 27638057 27638211 -73742310 - FRAM SINE Alu -26 150 1 24 32 0 0 chr15 27638444 27638475 -73742046 + AT_rich Low_complexity Low_complexity 1 31 0 1745 154 3 10 chr15 27640081 27640374 -73740147 - AluJo SINE Alu -21 291 1 1437 184 42 4 chr15 27640496 27640757 -73739764 - AluJb SINE Alu -41 271 1 588 291 32 77 chr15 27640831 27641144 -73739377 + L2 LINE L2 2431 2729 -585 207 305 0 0 chr15 27641168 27641227 -73739294 + CT-rich Low_complexity Low_complexity 1 59 0 292 204 0 0 chr15 27642538 27642592 -73737929 - MER58 DNA MER1_type -117 224 171 195 216 255 10 chr15 27643063 27643165 -73737356 + L2 LINE L2 3143 3269 -3 2204 102 3 0 chr15 27644405 27644698 -73735823 + AluY SINE Alu 1 294 -17 2023 62 0 0 chr15 27646035 27646276 -73734245 + AluSg SINE Alu 1 241 -69 2359 79 0 26 chr15 27647154 27647457 -73733064 - AluSq SINE Alu -18 295 1 2167 107 30 0 chr15 27647585 27647884 -73732637 + AluSx SINE Alu 1 308 -4 313 253 93 84 chr15 27648261 27648315 -73732206 - L1M4 LINE L1 -2218 3928 3876 2365 81 0 44 chr15 27648315 27648635 -73731886 - AluSg SINE Alu -4 306 1 313 253 93 84 chr15 27648635 27648817 -73731704 - L1M4 LINE L1 -2270 3876 3690 777 220 154 76 chr15 27648822 27649231 -73731290 - MLT1F1 LTR MaLR -58 509 69 674 174 68 0 chr15 27649237 27649369 -73731152 - Tigger1 DNA MER2_type -1 2417 2277 * 11328 121 29 16 chr15 27649362 27649650 -73730871 - Tigger1 DNA MER2_type -655 1763 1480 1543 70 10 5 chr15 27649650 27649850 -73730671 - AluY SINE Alu -1 310 110 11328 121 29 16 chr15 27649850 27651301 -73729220 - Tigger1 DNA MER2_type -938 1480 1 954 205 144 5 chr15 27651818 27652013 -73728508 - MER58A DNA MER1_type -2 222 1 1546 160 125 12 chr15 27653646 27653902 -73726619 + AluJo SINE Alu 1 285 -17 418 16 66 0 chr15 27653902 27653963 -73726558 + (AAATG)n Simple_repeat Simple_repeat 1 65 0 423 127 0 0 chr15 27653963 27654018 -73726503 + AluJ/FRAM SINE Alu 226 280 -32 232 0 105 0 chr15 27654020 27654058 -73726463 + (AAATG)n Simple_repeat Simple_repeat 2 43 0 413 127 0 0 chr15 27654059 27654114 -73726407 + AluJ/FRAM SINE Alu 226 280 -32 474 14 57 0 chr15 27654123 27654193 -73726328 + (AAATG)n Simple_repeat Simple_repeat 1 74 0 402 132 0 0 chr15 27654193 27654246 -73726275 + AluJ/FRAM SINE Alu 226 278 -34 196 0 118 0 chr15 27654262 27654296 -73726225 + (AAATG)n Simple_repeat Simple_repeat 1 38 0 356 167 0 0 chr15 27654296 27654350 -73726171 + AluJ/FRAM SINE Alu 226 279 -23 273 0 106 0 chr15 27654350 27654397 -73726124 + (AAATG)n Simple_repeat Simple_repeat 1 52 0 369 206 27 0 chr15 27654397 27654470 -73726051 + AluJ/FRAM SINE Alu 226 300 -2 246 43 85 0 chr15 27654474 27654521 -73726000 + (AAATG)n Simple_repeat Simple_repeat 5 55 0 421 125 0 0 chr15 27654527 27654583 -73725938 + AluJ/FRAM SINE Alu 225 280 -32 282 0 104 0 chr15 27654585 27654633 -73725888 + (AAATG)n Simple_repeat Simple_repeat 1 53 0 351 164 0 0 chr15 27654633 27654688 -73725833 + AluJ/FRAM SINE Alu 226 280 -22 232 25 75 0 chr15 27654690 27654730 -73725791 + (AAATG)n Simple_repeat Simple_repeat 1 43 0 350 130 0 19 chr15 27654730 27654784 -73725737 + AluJ/FRAM SINE Alu 226 278 -24 325 20 61 0 chr15 27654800 27654849 -73725672 + (AAATG)n Simple_repeat Simple_repeat 2 53 0 365 164 0 0 chr15 27654850 27654905 -73725616 + AluJ/FRAM SINE Alu 226 280 -22 381 32 65 0 chr15 27654909 27654971 -73725550 + (AAATG)n Simple_repeat Simple_repeat 1 66 0 423 219 0 0 chr15 27654971 27655053 -73725468 + AluJ/FRAM SINE Alu 226 307 -5 431 140 0 0 chr15 27655081 27655138 -73725383 + AluJ/FRAM SINE Alu 225 281 -31 494 12 96 0 chr15 27655139 27655222 -73725299 + (AAATG)n Simple_repeat Simple_repeat 2 92 0 423 127 0 0 chr15 27655223 27655278 -73725243 + AluJ/FRAM SINE Alu 226 280 -32 215 0 67 0 chr15 27655280 27655310 -73725211 + (AAATG)n Simple_repeat Simple_repeat 2 33 0 338 93 0 0 chr15 27655311 27655354 -73725167 + Alu SINE Alu 225 267 -34 * 372 177 0 18 chr15 27655332 27655364 -73725157 + AluJ/FRAM SINE Alu 226 226 -76 306 19 94 0 chr15 27655364 27655417 -73725104 + (AAATG)n Simple_repeat Simple_repeat 1 58 0 372 177 0 18 chr15 27655417 27655470 -73725051 + AluJ/FRAM SINE Alu 226 278 -24 327 0 94 0 chr15 27655486 27655539 -73724982 + (AAATG)n Simple_repeat Simple_repeat 1 58 0 365 164 0 0 chr15 27655539 27655594 -73724927 + AluJ/FRAM SINE Alu 226 280 -22 202 0 91 0 chr15 27655598 27655631 -73724890 + (AAATG)n Simple_repeat Simple_repeat 1 36 0 355 233 0 0 chr15 27655631 27655704 -73724817 + AluJ/FRAM SINE Alu 226 298 -4 357 18 70 0 chr15 27655708 27655765 -73724756 + (AAATG)n Simple_repeat Simple_repeat 5 65 0 410 143 0 0 chr15 27655771 27655827 -73724694 + AluJ/FRAM SINE Alu 225 280 -32 331 0 82 0 chr15 27655829 27655878 -73724643 + (AAATG)n Simple_repeat Simple_repeat 1 53 0 363 191 0 0 chr15 27655878 27655941 -73724580 + AluJ/FRAM SINE Alu 226 288 -14 379 26 117 0 chr15 27655941 27656018 -73724503 + (AAATG)n Simple_repeat Simple_repeat 2 87 0 410 143 0 0 chr15 27656018 27656074 -73724447 + AluJ/FRAM SINE Alu 225 280 -32 306 19 94 0 chr15 27656076 27656129 -73724392 + (AAATG)n Simple_repeat Simple_repeat 1 58 0 357 151 0 0 chr15 27656129 27656182 -73724339 + AluJ/FRAM SINE Alu 226 278 -24 269 26 26 0 chr15 27656198 27656236 -73724285 + (AAATG)n Simple_repeat Simple_repeat 5 43 0 365 164 0 0 chr15 27656243 27656298 -73724223 + AluJ/FRAM SINE Alu 226 280 -22 316 21 62 0 chr15 27656302 27656350 -73724171 + (AAATG)n Simple_repeat Simple_repeat 1 51 0 423 127 0 0 chr15 27656350 27656405 -73724116 + AluJ/FRAM SINE Alu 226 280 -32 518 15 30 0 chr15 27656407 27656473 -73724048 + (AAATG)n Simple_repeat Simple_repeat 1 68 0 373 146 0 0 chr15 27656473 27656528 -73723993 + AluJ/FRAM SINE Alu 226 280 -22 506 24 73 0 chr15 27656530 27656612 -73723909 + (AAATG)n Simple_repeat Simple_repeat 1 88 0 423 127 0 0 chr15 27656612 27656667 -73723854 + AluJ/FRAM SINE Alu 226 280 -32 362 16 81 0 chr15 27656667 27656729 -73723792 + (AAATG)n Simple_repeat Simple_repeat 1 67 0 229 250 0 0 chr15 27656735 27656791 -73723730 + L1MEc LINE L1 135 190 -6206 1616 88 92 11 chr15 27656802 27657063 -73723458 + L1MA3 LINE L1 6024 6305 0 1433 247 126 14 chr15 27657082 27657592 -73722929 + L1MEc LINE L1 184 750 -5646 44468 46 5 1 chr15 27657610 27663741 -73716780 - L1PA4 LINE L1 0 6155 2 201 74 0 0 chr15 27663775 27663802 -73716719 + (A)n Simple_repeat Simple_repeat 1 27 0 1451 212 61 5 chr15 27663869 27664529 -73715992 + ERVL-D LTR ERVL 1069 1791 -3894 1781 239 36 36 chr15 27664691 27665278 -73715243 - L1MC3 LINE L1 -709 7076 6490 980 222 43 0 chr15 27665601 27665808 -73714713 - MER58A DNA MER1_type 0 224 9 1580 98 98 70 chr15 27666087 27666372 -73714149 - AluSx SINE Alu -19 293 1 289 359 36 24 chr15 27666874 27667041 -73713480 + MIR SINE MIR 20 188 -74 405 273 49 33 chr15 27667260 27667443 -73713078 - L2 LINE L2 0 3313 3128 1815 176 22 6 chr15 27667873 27668236 -73712285 - LTR57 LTR ERVL -40 371 3 1079 209 25 0 chr15 27668239 27668474 -73712047 + ERVL-D LTR ERVL 1788 2028 -3657 1574 218 33 3 chr15 27668474 27668805 -73711716 - MLT1A1 LTR MaLR 0 365 25 3870 213 41 63 chr15 27668810 27669328 -73711193 - MLT1A1-int LTR MaLR -636 1099 571 204 40 0 0 chr15 27669328 27669353 -73711168 + (TTCTCC)n Simple_repeat Simple_repeat 3 27 0 1571 196 0 41 chr15 27669353 27669644 -73710877 - AluJo SINE Alu -31 281 3 3870 213 41 63 chr15 27669644 27670245 -73710276 - MLT1A1-int LTR MaLR -1162 573 4 1596 224 9 3 chr15 27670249 27670598 -73709923 - MLT1A1 LTR MaLR 0 365 15 904 282 57 4 chr15 27670608 27670888 -73709633 + ERVL-D LTR ERVL 3130 3424 -2261 737 244 38 14 chr15 27670899 27671108 -73709413 + ERVL-D LTR ERVL 3536 3749 -1936 592 187 168 0 chr15 27671739 27671894 -73708627 + LTR47A LTR ERVL 261 441 -11 3692 197 30 77 chr15 27671894 27672945 -73707576 + ERVL-D LTR ERVL 3875 4876 -809 630 202 229 0 chr15 27672945 27673133 -73707388 + LTR39 LTR ERV1 1 231 -552 2494 84 0 0 chr15 27673145 27673454 -73707067 - AluY SINE Alu 0 311 3 2308 92 7 0 chr15 27673472 27673775 -73706746 - AluSx SINE Alu -7 305 1 384 303 66 31 chr15 27673801 27674283 -73706238 + L1M4 LINE L1 3256 3754 -2392 1413 277 41 76 chr15 27674455 27675210 -73705311 - L1M4 LINE L1 -5043 1812 1103 2504 63 0 0 chr15 27675210 27675512 -73705009 + AluY SINE Alu 1 302 -9 1413 277 41 76 chr15 27675512 27675808 -73704713 - L1M4 LINE L1 -5752 1103 798 251 319 60 0 chr15 27675824 27675940 -73704581 - L1M4 LINE L1 -6037 822 700 357 252 71 76 chr15 27675946 27676092 -73704429 - L1M4 LINE L1 -6618 241 95 2578 66 0 0 chr15 27676092 27676397 -73704124 + AluY SINE Alu 1 305 -6 357 252 71 76 chr15 27676397 27676460 -73704061 - L1M4 LINE L1 -6764 95 33 1313 214 12 69 chr15 27676994 27677597 -73702924 - MLT2B1 LTR ERVL 0 520 1 10447 191 14 5 chr15 27677597 27679670 -73700851 - ERVL-B1 LTR ERVL -7 5757 3668 2572 230 15 18 chr15 27679688 27679839 -73700682 + ERVL-D LTR ERVL 1777 1927 -3837 2160 132 0 6 chr15 27679839 27680150 -73700371 - AluSg SINE Alu -1 309 1 2572 230 15 18 chr15 27680150 27680597 -73699924 + ERVL-D LTR ERVL 1927 2373 -3391 1203 251 50 19 chr15 27680602 27681020 -73699501 + L1M4 LINE L1 4708 5138 -1008 * 1903 175 95 5 chr15 27681001 27681412 -73699109 + L1MC1 LINE L1 5877 6324 -9 2385 65 31 0 chr15 27681419 27681713 -73698808 + AluY SINE Alu 1 303 -8 9097 216 42 7 chr15 27681713 27683726 -73696795 + ERVL-D LTR ERVL 2367 4451 -1313 2029 222 40 2 chr15 27683716 27684215 -73696306 + ERVL-D LTR ERVL 4918 5435 -329 * 217 123 62 31 chr15 27684215 27684280 -73696241 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 1404 164 37 7 chr15 27684317 27684615 -73695906 + ERVL-D LTR ERVL 5451 5757 -7 657 193 40 0 chr15 27684618 27684768 -73695753 + MLT2D LTR ERVL 5 160 -254 2058 150 106 10 chr15 27684774 27685161 -73695360 + MSTB1 LTR MaLR 9 432 0 452 182 0 0 chr15 27685161 27685238 -73695283 + MLT2C1 LTR ERVL 155 231 -166 * 1152 220 43 69 chr15 27685237 27685655 -73694866 - MLT1C LTR MaLR -58 409 3 2154 64 4 4 chr15 27685679 27685989 -73694532 + AluY SINE Alu 1 310 0 201 343 29 0 chr15 27686858 27686928 -73693593 + L2 LINE L2 3186 3257 -15 1488 163 22 47 chr15 27687543 27687863 -73692658 - AluJo SINE Alu 0 312 1 243 304 247 15 chr15 27690550 27690813 -73689708 + L3 LINE CR1 1244 1567 -10 207 391 45 30 chr15 27691218 27691351 -73689170 - L2 LINE L2 -44 3228 3094 763 224 84 70 chr15 27693527 27693826 -73686695 + L2 LINE L2 3008 3310 -3 440 297 94 42 chr15 27695160 27695372 -73685149 - MIR SINE MIR -26 236 14 387 0 0 0 chr15 27695411 27695454 -73685067 + (TG)n Simple_repeat Simple_repeat 2 44 0 257 371 64 50 chr15 27695728 27695868 -73684653 - L2 LINE L2 -5 3267 3126 22 35 0 0 chr15 27696705 27696734 -73683787 + AT_rich Low_complexity Low_complexity 1 29 0 202 241 161 46 chr15 27698839 27698926 -73681595 + MER5B DNA MER1_type 3 99 -79 521 273 119 92 chr15 27699760 27700097 -73680424 - L1M4 LINE L1 -1972 4174 3829 384 77 0 0 chr15 27700296 27700348 -73680173 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 2117 89 3 28 chr15 27700348 27700639 -73679882 - AluY SINE Alu -26 285 2 740 133 0 16 chr15 27700783 27700911 -73679610 + MER3 DNA MER1_type 67 192 -17 2180 93 7 23 chr15 27702448 27702748 -73677773 + AluSx SINE Alu 1 295 -17 216 67 0 0 chr15 27702940 27702970 -73677551 + (GGA)n Simple_repeat Simple_repeat 3 32 0 30 45 0 0 chr15 27703211 27703255 -73677266 + AT_rich Low_complexity Low_complexity 1 44 0 810 230 90 22 chr15 27703302 27703667 -73676854 - L1MC5 LINE L1 -304 7657 7268 442 257 104 25 chr15 27703831 27704072 -73676449 - L1MC5 LINE L1 -745 7216 6957 493 329 69 83 chr15 27706114 27706270 -73674251 + L2 LINE L2 2842 2999 -273 2068 101 61 0 chr15 27706270 27706548 -73673973 - AluSx SINE Alu -17 295 1 493 329 69 83 chr15 27706548 27706826 -73673695 + L2 LINE L2 2999 3270 -2 641 316 53 4 chr15 27707299 27707546 -73672975 + L2 LINE L2 2815 3073 -240 537 214 0 0 chr15 27707637 27707740 -73672781 + U6 snRNA snRNA 4 106 -1 2297 81 0 3 chr15 27708421 27708719 -73671802 + AluSg SINE Alu 3 299 -11 363 250 173 10 chr15 27708962 27709066 -73671455 + L2 LINE L2 3193 3313 0 1122 224 97 24 chr15 27710456 27710836 -73669685 - L1MD2 LINE L1 -13 6346 5939 2311 102 0 0 chr15 27710899 27711192 -73669329 + AluSx SINE Alu 1 293 -19 563 198 78 0 chr15 27711204 27711320 -73669201 + FLAM_C SINE Alu 1 125 -18 1369 205 31 14 chr15 27711330 27711623 -73668898 + AluJo SINE Alu 1 298 -14 334 194 9 4 chr15 27711668 27711776 -73668745 + Tigger5 DNA MER2_type 44 199 -2124 2156 105 24 0 chr15 27712190 27712485 -73668036 + AluSx SINE Alu 1 302 -10 1807 172 30 15 chr15 27712910 27713247 -73667274 - MER2 DNA MER2_type -1 343 2 2306 95 0 3 chr15 27713305 27713601 -73666920 - AluSx SINE Alu -17 295 1 1471 150 213 8 chr15 27713912 27714312 -73666209 - L1MB7 LINE L1 0 6184 5703 * 1897 217 120 17 chr15 27714310 27715058 -73665463 - L1M4 LINE L1 -1638 4508 3638 391 182 0 0 chr15 27717756 27717822 -73662699 - MER92C LTR ERV1 0 554 489 255 300 33 11 chr15 27717917 27718007 -73662514 - MER92C LTR ERV1 -462 92 1 1152 161 0 0 chr15 27718008 27718182 -73662339 + AluJb SINE Alu 109 282 -30 1907 159 7 3 chr15 27718964 27719260 -73661261 - AluJb SINE Alu -15 297 1 2392 86 0 13 chr15 27719404 27719707 -73660814 - AluSg SINE Alu -11 299 1 21 0 0 0 chr15 27720891 27720912 -73659609 + AT_rich Low_complexity Low_complexity 1 21 0 2265 88 3 14 chr15 27725790 27726087 -73654434 - AluY SINE Alu -17 294 1 2225 103 0 19 chr15 27726229 27726539 -73653982 + AluSx SINE Alu 1 304 -8 1900 189 88 8 chr15 27727007 27727394 -73653127 + MER47B DNA MER2_type 1 418 0 207 260 87 104 chr15 27727539 27727712 -73652809 + L2 LINE L2 2856 3025 -288 213 182 45 0 chr15 27727795 27727839 -73652682 + L2 LINE L2 3196 3241 -72 457 261 238 17 chr15 27727841 27728300 -73652221 + L1MEc LINE L1 1113 1672 -4724 1210 112 77 0 chr15 27728303 27728499 -73652022 + MER2 DNA MER2_type 1 211 -134 460 248 58 15 chr15 27728614 27728649 -73651872 + L1MEc LINE L1 1675 1707 -4689 1848 168 0 7 chr15 27728649 27728947 -73651574 - AluJb SINE Alu 0 312 17 460 248 58 15 chr15 27728947 27729048 -73651473 + L1MEc LINE L1 1707 1817 -4579 629 233 149 4 chr15 27729053 27729302 -73651219 + L1MEc LINE L1 1856 2140 -4256 987 185 11 38 chr15 27729308 27729492 -73651029 + AluJb SINE Alu 1 179 -133 4487 228 99 18 chr15 27729492 27729948 -73650573 + L1MEc LINE L1 2168 2585 -3630 1582 162 86 14 chr15 27729948 27730238 -73650283 + AluJb SINE Alu 1 311 -1 4487 228 99 18 chr15 27730238 27730967 -73649554 + L1MEc LINE L1 2585 3492 -2723 2080 114 13 35 chr15 27730967 27731284 -73649237 + AluSx SINE Alu 1 310 -2 4487 228 99 18 chr15 27731284 27731633 -73648888 + L1MEc LINE L1 3492 3811 -2404 2799 209 75 26 chr15 27731670 27731745 -73648776 + L1MB4 LINE L1 4540 4610 -1536 2448 80 0 0 chr15 27731745 27732047 -73648474 - AluY SINE Alu -9 302 1 2799 209 75 26 chr15 27732047 27732707 -73647814 + L1MB4 LINE L1 4610 5311 -835 1374 52 29 0 chr15 27732780 27732954 -73647567 - L1MA1 LINE L1 -6 6296 6118 451 232 99 91 chr15 27732974 27733244 -73647277 + MLT1E LTR MaLR 41 312 -255 459 40 100 24 chr15 27733928 27734180 -73646341 + (TA)n Simple_repeat Simple_repeat 1 271 0 * 476 91 57 34 chr15 27734144 27734319 -73646202 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 231 68 54 40 chr15 27734358 27734432 -73646089 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 283 194 0 42 chr15 27734437 27734509 -73646012 + (TA)n Simple_repeat Simple_repeat 2 70 0 306 0 0 0 chr15 27735444 27735478 -73645043 + (CA)n Simple_repeat Simple_repeat 1 34 0 206 279 98 74 chr15 27735694 27735816 -73644705 - MER5A DNA MER1_type 0 189 65 821 156 0 0 chr15 27736758 27736886 -73643635 - AluJb SINE Alu -13 299 172 461 152 0 0 chr15 27736886 27736952 -73643569 - AluJ/FLAM SINE Alu -244 68 3 2851 204 63 26 chr15 27739428 27740153 -73640368 + L1MB4 LINE L1 5428 6179 -1 1877 142 3 65 chr15 27742878 27743201 -73637320 + AluJb SINE Alu 1 303 -9 1583 190 36 18 chr15 27743667 27743998 -73636523 + MER58B DNA MER1_type 5 341 0 2426 150 17 74 chr15 27744056 27744268 -73636253 + Tigger2a DNA MER2_type 1 223 -2485 2280 118 7 0 chr15 27744268 27744574 -73635947 - AluSx SINE Alu -4 308 1 2431 71 10 0 chr15 27744582 27744879 -73635642 - AluSp SINE Alu -8 305 6 2426 150 17 74 chr15 27744879 27745117 -73635404 + Tigger2a DNA MER2_type 230 434 0 222 118 0 0 chr15 27746105 27746139 -73634382 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 304 279 162 35 chr15 27746570 27746946 -73633575 + L2 LINE L2 2187 2610 -704 382 330 118 9 chr15 27746946 27747295 -73633226 + L2 LINE L2 2884 3270 -2 414 239 157 0 chr15 27747578 27747712 -73632809 - MIR SINE MIR 0 262 108 4558 93 27 37 chr15 27748245 27748375 -73632146 - L1MA5 LINE L1 -2 6298 6168 710 225 0 0 chr15 27748375 27748495 -73632026 - FLAM_A SINE Alu -13 120 1 4558 93 27 37 chr15 27748495 27749073 -73631448 - L1MA5 LINE L1 -132 6168 5597 1998 125 30 13 chr15 27749317 27749620 -73630901 + AluJb SINE Alu 1 308 -4 2303 138 12 0 chr15 27750603 27750937 -73629584 - MER1B DNA MER1_type 0 339 2 1038 154 109 25 chr15 27751097 27751298 -73629223 - MER20 DNA MER1_type 0 219 2 472 219 18 0 chr15 27751332 27751446 -73629075 + ERVL LTR ERVL 2291 2406 -3358 2392 98 0 0 chr15 27751903 27752200 -73628321 - AluSg SINE Alu -13 297 1 21 36 0 0 chr15 27753377 27753405 -73627116 + AT_rich Low_complexity Low_complexity 1 28 0 543 338 113 5 chr15 27753904 27754321 -73626200 - L2 LINE L2 -1 3312 2851 2343 77 18 0 chr15 27755132 27755418 -73625103 - AluSp SINE Alu -22 291 1 2402 96 0 0 chr15 27756433 27756746 -73623775 - AluSq SINE Alu 0 313 1 916 170 0 30 chr15 27756748 27756913 -73623608 + AluJo/FRAM SINE Alu 148 307 -5 796 202 91 29 chr15 27760593 27760738 -73619783 + MER63 DNA MER1_type 838 1001 -60 2538 75 0 0 chr15 27760738 27761046 -73619475 - AluY SINE Alu -3 308 1 796 202 91 29 chr15 27761046 27761108 -73619413 + MER63 DNA MER1_type 1001 1058 -3 196 398 8 8 chr15 27761116 27761239 -73619282 + L2 LINE L2 3191 3313 0 584 235 121 95 chr15 27761279 27761691 -73618830 - L2 LINE L2 -5 3308 2886 934 225 6 0 chr15 27761739 27761921 -73618600 - MER58A DNA MER1_type 0 224 42 345 222 159 16 chr15 27761956 27762082 -73618439 - L2 LINE L2 -504 2810 2667 2350 85 3 0 chr15 27762088 27762381 -73618140 + AluY SINE Alu 1 294 -17 1729 215 80 5 chr15 27762381 27762804 -73617717 + L1MB5 LINE L1 5598 6052 -122 2144 120 10 0 chr15 27763285 27763577 -73616944 + AluSx SINE Alu 2 296 -16 483 208 88 0 chr15 27764559 27764684 -73615837 + L1MC3 LINE L1 5195 5330 -816 1802 206 57 4 chr15 27764687 27765347 -73615174 + L1MD2 LINE L1 4849 5545 -743 1001 146 11 22 chr15 27765370 27765548 -73614973 + L1MD1 LINE L1 6062 6237 -5 2527 186 38 55 chr15 27765548 27765598 -73614923 + L1MC3 LINE L1 5317 5366 -978 2446 62 0 10 chr15 27765598 27765907 -73614614 + AluY SINE Alu 1 306 -5 2527 186 38 55 chr15 27765907 27766508 -73614013 + L1MC3 LINE L1 5366 5572 -772 624 154 31 15 chr15 27766661 27766791 -73613730 - AluSp SINE Alu -180 133 2 593 152 18 9 chr15 27766819 27766931 -73613590 + AluJb SINE Alu 2 114 -198 1583 158 0 45 chr15 27766933 27767243 -73613278 - AluSp SINE Alu -17 296 1 873 98 30 0 chr15 27767250 27767382 -73613139 - AluSp SINE Alu -177 136 1 917 196 11 0 chr15 27767412 27767601 -73612920 + AluJb SINE Alu 118 308 -4 1445 98 0 0 chr15 27768752 27768936 -73611585 + AluSx SINE Alu 2 185 -127 1903 234 67 38 chr15 27769059 27769101 -73611420 + L1MD2 LINE L1 5551 5590 -769 180 0 0 0 chr15 27769101 27769121 -73611400 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1903 234 67 38 chr15 27769121 27769412 -73611109 + L1MD2 LINE L1 5590 5912 -447 2183 89 0 3 chr15 27769412 27769732 -73610789 + AluSc SINE Alu 1 319 0 1903 234 67 38 chr15 27769732 27769978 -73610543 + L1MD2 LINE L1 5912 6149 -210 469 173 0 0 chr15 27770181 27770260 -73610261 - MER2 DNA MER2_type -135 210 132 1594 159 5 66 chr15 27770260 27770683 -73609838 - MER1B DNA MER1_type 0 339 3 706 182 8 0 chr15 27770690 27770811 -73609710 - MER2 DNA MER2_type -222 123 2 370 203 8 73 chr15 27770812 27770935 -73609586 + L1MD3 LINE L1 7868 7982 -13 2564 58 3 0 chr15 27770935 27771243 -73609278 + AluY SINE Alu 1 309 -2 1877 146 182 17 chr15 27772270 27772632 -73607889 + MSTB LTR MaLR 5 426 0 2436 60 0 0 chr15 27773031 27773348 -73607173 + AluY SINE Alu 1 317 0 2302 289 166 39 chr15 27773975 27775377 -73605144 + L2 LINE L2 285 1864 -1450 1820 225 3 11 chr15 27775433 27775793 -73604728 + MLT1A1 LTR MaLR 1 357 -8 2855 187 8 14 chr15 27775793 27776306 -73604215 + MLT1A1-int LTR MaLR 3 512 -1223 2186 109 10 3 chr15 27776328 27776631 -73603890 + AluSx SINE Alu 1 305 -7 1009 191 109 18 chr15 27776634 27776896 -73603625 - MLT-int LTR MaLR -155 1496 1222 987 235 19 103 chr15 27777019 27777338 -73603183 - MLT-int LTR MaLR -945 790 499 * 2560 176 17 38 chr15 27777330 27777864 -73602657 + L1MA2 LINE L1 3938 4460 -1686 4587 126 18 119 chr15 27777864 27779404 -73601117 - pTR5 LTR ERV1 0 2606 1524 1313 150 20 4 chr15 27779404 27779650 -73600871 + L1MA2 LINE L1 4457 4706 -1440 5289 146 20 12 chr15 27781073 27782248 -73598273 + L1MA2 LINE L1 4696 5891 -413 1910 153 60 38 chr15 27782248 27782613 -73597908 + THE1C LTR MaLR 1 373 -2 5289 146 20 12 chr15 27782613 27782799 -73597722 + L1MA2 LINE L1 5891 6074 -230 22 0 0 0 chr15 27782880 27782902 -73597619 + AT_rich Low_complexity Low_complexity 1 22 0 840 304 143 25 chr15 27782945 27783435 -73597086 + L2 LINE L2 2179 2726 -588 434 183 17 52 chr15 27783505 27783620 -73596901 + MER3 DNA MER1_type 97 207 -2 798 203 0 0 chr15 27783766 27783904 -73596617 + MLT1A1 LTR MaLR 228 365 0 228 214 0 0 chr15 27783906 27783948 -73596573 - L1MEc LINE L1 -6314 82 41 1209 170 44 22 chr15 27784248 27784477 -73596044 - MLT1A1 LTR MaLR -129 236 3 2765 281 81 37 chr15 27784478 27784553 -73595968 + L1MEc LINE L1 79 149 -6247 1571 199 40 70 chr15 27784553 27784955 -73595566 - MLT1B LTR MaLR 0 390 1 2765 281 81 37 chr15 27784955 27785254 -73595267 + L1MEc LINE L1 149 434 -5962 2650 206 63 34 chr15 27785254 27785838 -73594683 - MER77 LTR ERV1 -4 601 1 2765 281 81 37 chr15 27785838 27786119 -73594402 + L1MEc LINE L1 434 701 -5695 5073 164 44 1 chr15 27786119 27787478 -73593043 + L1PA16 LINE L1 4766 6158 -8 2765 281 81 37 chr15 27787478 27787492 -73593029 + L1MEc LINE L1 701 713 -5683 1534 196 95 9 chr15 27787492 27787828 -73592693 + MLT1A1 LTR MaLR 1 365 0 2765 281 81 37 chr15 27787828 27788243 -73592278 + L1MEc LINE L1 713 1239 -5157 2392 90 0 3 chr15 27788243 27788555 -73591966 + AluY SINE Alu 1 311 0 2765 281 81 37 chr15 27788555 27788831 -73591690 + L1MEc LINE L1 1239 1502 -4894 255 132 0 0 chr15 27788930 27788968 -73591553 + Alu SINE Alu 5 42 -260 376 278 135 8 chr15 27889972 27890105 -73490416 - MIR SINE MIR -49 213 64 398 272 233 29 chr15 27890129 27890335 -73490186 - MIR SINE MIR -5 257 10 1447 182 42 6 chr15 27890354 27890667 -73489854 + MER33 DNA MER1_type 1 324 0 21 0 0 0 chr15 27890675 27890696 -73489825 + AT_rich Low_complexity Low_complexity 1 21 0 2170 119 0 7 chr15 27891126 27891429 -73489092 - AluSx SINE Alu -7 305 5 184 339 15 31 chr15 27894158 27894223 -73486298 + L2 LINE L2 3127 3190 -82 377 321 128 5 chr15 27894435 27894622 -73485899 - MIR SINE MIR -6 256 47 202 261 56 78 chr15 27896198 27896340 -73484181 + MIR SINE MIR 50 188 -74 180 0 0 0 chr15 27896372 27896392 -73484129 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr15 27896814 27896836 -73483685 + AT_rich Low_complexity Low_complexity 1 22 0 523 191 23 0 chr15 27896863 27896964 -73483557 + MER5A DNA MER1_type 4 106 -83 432 0 0 0 chr15 27896986 27897034 -73483487 + (TG)n Simple_repeat Simple_repeat 2 49 0 1911 112 48 0 chr15 27897201 27897489 -73483032 - AluSg SINE Alu 0 301 1 335 348 25 76 chr15 27899133 27899369 -73481152 + L2 LINE L2 3034 3257 -15 25 0 0 0 chr15 27899544 27899569 -73480952 + AT_rich Low_complexity Low_complexity 1 25 0 973 281 84 47 chr15 27901615 27902371 -73478150 + L1ME4a LINE L1 5080 5882 -239 2045 130 3 23 chr15 27902665 27902972 -73477549 - AluSx SINE Alu -11 301 1 188 343 51 51 chr15 27903065 27903202 -73477319 + L2 LINE L2 3136 3272 0 2368 76 0 10 chr15 27903666 27903968 -73476553 - AluY SINE Alu -12 299 1 793 230 158 27 chr15 27904344 27904566 -73475955 + MIR SINE MIR 12 262 0 443 289 64 32 chr15 27904666 27904679 -73475842 - MIR SINE MIR -100 162 151 536 130 13 0 chr15 27904679 27904756 -73475765 + MADE1 DNA Mariner 3 80 0 443 289 64 32 chr15 27904756 27904898 -73475623 - MIR SINE MIR -111 151 2 464 173 0 0 chr15 27904944 27905025 -73475496 - AluJo SINE Alu -2 310 230 1226 174 0 0 chr15 27905033 27905217 -73475304 - AluJo SINE Alu -123 189 6 923 204 11 27 chr15 27905586 27905772 -73474749 + MER5A DNA MER1_type 1 183 -6 367 289 88 59 chr15 27907033 27907272 -73473249 - MIR SINE MIR -6 256 11 1177 227 84 80 chr15 27907397 27907837 -73472684 - MLT1J1 LTR MaLR 0 446 5 1027 345 116 29 chr15 27908494 27909178 -73471343 + L3 LINE CR1 74 816 -761 214 305 19 38 chr15 27909321 27909426 -73471095 + L2 LINE L2 1333 1435 -1879 226 243 0 40 chr15 27910022 27910096 -73470425 + GA-rich Low_complexity Low_complexity 2 72 0 359 328 52 15 chr15 27910196 27910330 -73470191 - L2 LINE L2 -30 3242 3104 212 284 0 54 chr15 27911271 27911345 -73469176 - L2 LINE L2 -10 3262 3193 412 258 253 0 chr15 27911403 27911581 -73468940 - MIR SINE MIR -10 252 30 2238 219 158 28 chr15 27911916 27912149 -73468372 - L1MC4 LINE L1 -451 7591 7390 2472 63 0 3 chr15 27912149 27912451 -73468070 + AluY SINE Alu 1 301 -10 2238 219 158 28 chr15 27912451 27912661 -73467860 - L1MC4 LINE L1 -652 7390 7209 195 114 0 0 chr15 27912661 27912696 -73467825 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 2238 219 158 28 chr15 27912696 27912977 -73467544 - L1MC4 LINE L1 -833 7209 6771 2366 44 0 0 chr15 27913310 27913584 -73466937 - AluY SINE Alu -8 303 30 2176 107 0 0 chr15 27917300 27917581 -73462940 + AluSx SINE Alu 1 281 -31 945 147 0 0 chr15 27917445 27917581 -73462940 + AluSg/x SINE Alu 146 306 0 205 40 0 0 chr15 27917581 27917606 -73462915 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 23 0 0 0 chr15 27918112 27918135 -73462386 + AT_rich Low_complexity Low_complexity 1 23 0 2587 61 0 0 chr15 27918476 27918786 -73461735 - AluY SINE Alu -1 310 1 21 0 0 0 chr15 27919377 27919398 -73461123 + AT_rich Low_complexity Low_complexity 1 21 0 2596 64 0 0 chr15 27919577 27919888 -73460633 - AluY SINE Alu 0 311 1 278 281 10 42 chr15 27920632 27920728 -73459793 - MIR SINE MIR -56 206 114 1267 194 94 65 chr15 27920753 27921232 -73459289 + L1MC5 LINE L1 7388 7880 -81 2028 141 3 3 chr15 27921241 27921553 -73458968 - AluSx SINE Alu 0 312 1 2248 115 3 0 chr15 27921659 27921963 -73458558 + AluSp SINE Alu 3 307 -6 2063 109 0 53 chr15 27923231 27923553 -73456968 + AluSq SINE Alu 1 305 -8 431 301 44 15 chr15 27923763 27923899 -73456622 - MIR SINE MIR -120 142 3 2108 149 95 0 chr15 27923905 27924273 -73456248 - MER57A LTR ERV1 0 403 1 215 284 106 35 chr15 27924280 27924421 -73456100 + L2 LINE L2 3161 3311 -2 2413 64 0 7 chr15 27924555 27924853 -73455668 - AluY SINE Alu -15 296 1 283 250 32 105 chr15 27926200 27926324 -73454197 - L2 LINE L2 0 3313 3199 508 309 63 11 chr15 27926393 27926568 -73453953 + MIR SINE MIR 1 184 -78 2391 145 6 6 chr15 27927067 27927404 -73453117 + MER1B DNA MER1_type 1 337 0 480 290 57 45 chr15 27929434 27929610 -73450911 - MER5B DNA MER1_type 0 178 1 1809 140 51 14 chr15 27930573 27930866 -73449655 + AluJb SINE Alu 1 304 -8 420 267 61 15 chr15 27930959 27931090 -73449431 - L2 LINE L2 0 3272 3136 2059 111 4 7 chr15 27931203 27931527 -73448994 + AluSc SINE Alu 1 323 0 276 304 13 0 chr15 27931561 27931640 -73448881 - L2 LINE L2 -663 2651 2572 246 128 0 0 chr15 27932455 27932494 -73448027 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 1991 135 0 20 chr15 27933663 27933966 -73446555 + AluSx SINE Alu 1 297 -15 315 105 0 0 chr15 27933981 27934038 -73446483 + (GA)n Simple_repeat Simple_repeat 2 58 0 2615 62 0 0 chr15 27934136 27934445 -73446076 - AluY SINE Alu 0 311 3 587 311 70 4 chr15 27934678 27934906 -73445615 + MIR SINE MIR 6 248 -14 258 32 0 0 chr15 27934931 27934962 -73445559 + (CA)n Simple_repeat Simple_repeat 2 32 0 396 212 74 132 chr15 27934981 27935135 -73445386 + L1ME4a LINE L1 5769 5930 -191 195 42 0 0 chr15 27935135 27935159 -73445362 + (TC)n Simple_repeat Simple_repeat 1 24 0 396 212 74 132 chr15 27935159 27935367 -73445154 + L1ME4a LINE L1 5930 6110 -11 216 0 0 0 chr15 27935578 27935602 -73444919 + (A)n Simple_repeat Simple_repeat 1 24 0 216 0 0 0 chr15 27936211 27936235 -73444286 + (A)n Simple_repeat Simple_repeat 1 24 0 310 259 30 0 chr15 27936270 27936405 -73444116 + CT-rich Low_complexity Low_complexity 2 140 0 2659 42 0 0 chr15 27936499 27936808 -73443713 + AluY SINE Alu 1 309 -2 375 313 83 14 chr15 27936899 27937116 -73443405 - MIR SINE MIR -24 238 7 910 284 59 66 chr15 27937826 27938482 -73442039 - L1MC4a LINE L1 -345 5817 5279 235 296 28 83 chr15 27939170 27939278 -73441243 + L2 LINE L2 3190 3291 -22 * 364 226 58 58 chr15 27939277 27939414 -73441107 - L2 LINE L2 0 3313 3177 285 75 0 0 chr15 27943535 27943575 -73436946 + (TG)n Simple_repeat Simple_repeat 2 41 0 618 266 38 61 chr15 27944278 27944341 -73436180 + MIR SINE MIR 6 69 -193 2183 112 3 3 chr15 27944341 27944654 -73435867 + AluSp SINE Alu 1 313 0 618 266 38 61 chr15 27944654 27944853 -73435668 + MIR SINE MIR 69 262 0 2006 107 39 4 chr15 27944939 27945220 -73435301 + AluSg SINE Alu 1 291 -19 269 217 188 0 chr15 27947505 27947574 -73432947 - L2 LINE L2 -2 3270 3189 7622 55 9 0 chr15 27948107 27949620 -73430901 - L1PA7 LINE L1 -2 6152 4630 15209 82 17 9 chr15 27949620 27951744 -73428777 + L1P LINE L1 2641 4781 -1365 22 35 0 0 chr15 27951963 27951992 -73428529 + AT_rich Low_complexity Low_complexity 1 29 0 2503 60 0 13 chr15 27952393 27952708 -73427813 - AluY SINE Alu 0 311 1 327 315 167 12 chr15 27953821 27953983 -73426538 + MIR SINE MIR 36 222 -40 24 0 0 0 chr15 27954000 27954024 -73426497 + AT_rich Low_complexity Low_complexity 1 24 0 521 332 14 27 chr15 27958390 27958610 -73421911 + L3 LINE CR1 1347 1563 -14 297 281 0 24 chr15 27958687 27958769 -73421752 - MIR SINE MIR -36 226 147 4011 213 56 35 chr15 27959183 27960128 -73420393 + L1M4 LINE L1 5 969 -5573 1277 193 37 15 chr15 27960152 27960421 -73420100 + LTR52 LTR ERVL 144 418 -3 4786 209 51 43 chr15 27960426 27961025 -73419496 + L1M4 LINE L1 3908 4501 -2143 2391 96 0 3 chr15 27961025 27961337 -73419184 + AluSp SINE Alu 1 311 -2 4786 209 51 43 chr15 27961337 27962060 -73418461 + L1M4 LINE L1 4501 5241 -1403 1599 181 77 14 chr15 27962064 27962351 -73418170 + AluJo SINE Alu 1 305 -7 917 213 48 0 chr15 27962352 27962559 -73417962 + L1M4 LINE L1 4548 4764 -1880 2869 216 40 7 chr15 27962955 27964120 -73416401 + L1 LINE L1 3 1375 -4516 342 300 59 41 chr15 27964170 27964340 -73416181 - MLT1K LTR MaLR -282 306 134 4997 196 20 10 chr15 27964740 27965777 -73414744 - L1 LINE L1 -1671 4475 3428 3553 179 32 7 chr15 27965783 27966469 -73414052 + L1 LINE L1 4343 5045 -925 451 269 93 84 chr15 27966472 27966806 -73413715 + MLT1K LTR MaLR 143 479 -109 1106 226 20 8 chr15 27966826 27967074 -73413447 - MLT1F1 LTR MaLR 0 567 317 999 226 92 38 chr15 27967279 27967540 -73412981 - MLT1F1 LTR MaLR -280 287 13 441 172 69 0 chr15 27967550 27967637 -73412884 + MLT1K LTR MaLR 494 586 -2 2442 66 3 3 chr15 27967671 27967974 -73412547 + AluY SINE Alu 1 303 -8 2172 128 0 0 chr15 27970756 27971060 -73409461 - AluSx SINE Alu -8 304 1 1941 156 0 3 chr15 27972230 27972519 -73408002 - AluSx SINE Alu -19 293 6 245 292 73 51 chr15 27972652 27972789 -73407732 + MIR3 SINE MIR 21 160 -48 220 299 87 39 chr15 27972884 27973011 -73407510 - MIR3 SINE MIR -61 147 15 2207 101 0 10 chr15 27973015 27973311 -73407210 - AluSq SINE Alu -20 293 1 272 326 105 0 chr15 27974767 27974905 -73405616 - MIR SINE MIR -65 143 35 495 186 0 0 chr15 27974915 27975017 -73405504 + CT-rich Low_complexity Low_complexity 3 104 0 568 269 96 0 chr15 27975254 27975410 -73405111 + MER45A DNA AcHobo 8 178 0 1108 241 95 26 chr15 27975530 27975994 -73404527 - L1ME3A LINE L1 -224 5929 5434 1229 110 22 16 chr15 27976024 27976206 -73404315 - AluSg/x SINE Alu -10 302 120 409 209 118 0 chr15 27976213 27976408 -73404113 - L1ME3A LINE L1 -743 5386 5187 603 268 90 48 chr15 27976598 27976998 -73403523 - L1ME3A LINE L1 -1179 4950 4534 1433 168 32 72 chr15 27977003 27977323 -73403198 + MLT1A1 LTR MaLR 5 336 -29 2388 118 91 30 chr15 27977323 27977518 -73403003 + MSTB1 LTR MaLR 1 183 -249 2214 89 3 7 chr15 27977518 27977821 -73402700 + AluSg SINE Alu 2 303 -7 2388 118 91 30 chr15 27977821 27978030 -73402491 + MSTB1 LTR MaLR 183 430 -2 1433 168 32 72 chr15 27978030 27978045 -73402476 + MLT1A1 LTR MaLR 336 350 -15 2150 137 3 0 chr15 27978045 27978351 -73402170 - AluJb SINE Alu -5 307 1 1433 168 32 72 chr15 27978351 27978390 -73402131 + MLT1A1 LTR MaLR 350 365 0 1257 262 120 26 chr15 27978912 27979720 -73400801 - L1ME3A LINE L1 -1958 4171 3288 4911 134 7 17 chr15 27979746 27981335 -73399186 - L1MA1 LINE L1 -243 6059 4488 753 280 126 34 chr15 27981365 27982225 -73398296 - L1ME3A LINE L1 -2887 3242 2304 294 251 69 33 chr15 27982356 27982555 -73397966 - L1MDa LINE L1 -3840 2289 2093 4012 118 20 3 chr15 27982555 27983209 -73397312 - Tigger4(Zombi) DNA MER2_type -1 2730 2066 935 134 117 0 chr15 27983208 27983379 -73397142 - Tigger4(Zombi) DNA MER2_type -2540 191 1 * 338 262 73 12 chr15 27983398 27983751 -73396770 - L1MDa LINE L1 -4785 1344 952 2442 67 0 3 chr15 27983753 27984051 -73396470 - AluY SINE Alu -14 297 1 352 307 105 67 chr15 27984199 27984437 -73396084 - L1MDa LINE L1 -5313 806 560 814 176 24 6 chr15 27984438 27984603 -73395918 - MER20 DNA MER1_type -15 204 37 1595 177 6 40 chr15 27985499 27985826 -73394695 + LTR62 LTR ERVK 1 316 -403 2385 100 47 0 chr15 27985830 27986169 -73394352 - THE1A LTR MaLR 0 355 1 1733 72 4 0 chr15 27986169 27986404 -73394117 - THE1A-int LTR MaLR 0 1580 1345 2495 62 0 3 chr15 27986404 27986708 -73393813 + AluY SINE Alu 1 303 -8 934 211 93 117 chr15 27986892 27987441 -73393080 + MLT1F LTR MaLR 1 542 0 896 254 111 18 chr15 27987649 27987983 -73392538 + MLT1A1 LTR MaLR 1 365 0 210 281 49 49 chr15 27988323 27988405 -73392116 + MIR SINE MIR 30 111 -97 21 0 0 0 chr15 27989390 27989411 -73391110 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 27991333 27991354 -73389167 + AT_rich Low_complexity Low_complexity 1 21 0 2389 55 7 3 chr15 27994685 27994975 -73385546 - AluY SINE Alu -20 291 1 474 259 149 18 chr15 27999598 27999826 -73380695 - MIR SINE MIR -3 259 2 363 341 24 24 chr15 27999938 28000064 -73380457 + MIR SINE MIR 25 150 -58 241 284 30 0 chr15 28000530 28000597 -73379924 + GA-rich Low_complexity Low_complexity 4 72 0 323 133 86 0 chr15 28001034 28001185 -73379336 + (TA)n Simple_repeat Simple_repeat 2 165 0 379 159 33 71 chr15 28001282 28001464 -73379057 + (CATATA)n Simple_repeat Simple_repeat 4 178 0 320 117 98 0 chr15 28001473 28001636 -73378885 + (TA)n Simple_repeat Simple_repeat 1 179 0 202 106 43 0 chr15 28001660 28001707 -73378814 + (TA)n Simple_repeat Simple_repeat 2 50 0 636 99 0 0 chr15 28001707 28001788 -73378733 - AluSg/x SINE Alu -23 287 207 3857 155 59 62 chr15 28001788 28002762 -73377759 + L1MB7 LINE L1 5211 6184 0 314 308 136 18 chr15 28002778 28003051 -73377470 + L1MC/D LINE L1 5438 5742 -2066 511 254 48 0 chr15 28003087 28003213 -73377308 - MIR SINE MIR 0 262 131 495 315 73 0 chr15 28003386 28003551 -73376970 + MIR SINE MIR 11 187 -75 3846 115 2 4 chr15 28003556 28004111 -73376410 + MER41A LTR ERV1 1 554 0 286 113 57 0 chr15 28004111 28004164 -73376357 + MER41A-int LTR ERV1 1 56 -7700 25 0 0 0 chr15 28004566 28004591 -73375930 + AT_rich Low_complexity Low_complexity 1 25 0 495 291 7 14 chr15 28004867 28005008 -73375513 - MER58A DNA MER1_type 0 140 1 341 270 50 38 chr15 28005101 28005263 -73375258 + MIR SINE MIR 45 205 -57 212 302 0 16 chr15 28005954 28006017 -73374504 - MIR SINE MIR -59 149 88 2115 153 32 19 chr15 28006163 28006574 -73373947 + L1PB4 LINE L1 5741 6156 0 2465 74 10 7 chr15 28006876 28007186 -73373335 + AluY SINE Alu 1 311 0 297 0 0 0 chr15 28007826 28007859 -73372662 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 489 76 0 0 chr15 28008547 28008613 -73371908 + (TG)n Simple_repeat Simple_repeat 2 67 0 948 162 0 0 chr15 28008630 28008766 -73371755 - FLAM_C SINE Alu -5 138 3 1566 169 41 31 chr15 28010980 28011270 -73369251 + AluJo SINE Alu 1 293 -19 211 273 45 57 chr15 28012505 28012593 -73367928 - L2 LINE L2 0 3272 3186 3752 121 19 3 chr15 28012872 28013457 -73367064 + MER7C DNA MER2_type 2 595 -7 201 245 0 19 chr15 28013694 28013747 -73366774 - MIR3 SINE MIR -6 202 151 268 324 61 4 chr15 28013898 28014024 -73366497 - MER5A DNA MER1_type -37 152 1 453 344 145 37 chr15 28014855 28015593 -73364928 - L2 LINE L2 -533 2781 1964 2109 78 0 21 chr15 28015603 28015886 -73364635 + AluY SINE Alu 35 311 0 794 256 124 42 chr15 28015972 28016422 -73364099 + MLT1J LTR MaLR 25 511 0 2288 107 7 3 chr15 28016683 28016992 -73363529 - AluSx SINE Alu -2 310 1 203 179 0 0 chr15 28017980 28018019 -73362502 + A-rich Low_complexity Low_complexity 1 39 0 1859 128 4 19 chr15 28018328 28018593 -73361928 + AluJo SINE Alu 4 264 -48 367 252 14 91 chr15 28018857 28019000 -73361521 - MIR3 SINE MIR -6 202 71 357 24 0 0 chr15 28021587 28021629 -73358892 + (CA)n Simple_repeat Simple_repeat 2 43 0 318 341 0 0 chr15 28022819 28022931 -73357590 + MIR3 SINE MIR 58 170 -38 345 359 111 11 chr15 28024003 28024184 -73356337 - MIR3 SINE MIR -5 203 5 2024 96 0 87 chr15 28024894 28025227 -73355294 + AluY SINE Alu 1 304 -7 182 290 16 32 chr15 28026907 28026969 -73353552 + L3b LINE CR1 1507 1567 -16 1134 178 61 4 chr15 28027397 28027628 -73352893 + L1MB3 LINE L1 5864 6107 -76 7482 48 22 0 chr15 28027923 28028981 -73351540 - L1PA6 LINE L1 0 6154 5084 397 297 93 0 chr15 28029001 28029119 -73351402 + MER94 DNA DNA 5 133 -1 449 192 212 0 chr15 28029226 28029325 -73351196 - Charlie4 DNA MER1_type -24 1937 1818 573 246 84 22 chr15 28029679 28029858 -73350663 + MIR SINE MIR 57 246 -16 546 298 63 54 chr15 28029923 28030448 -73350073 + L2 LINE L2 2725 3251 -62 286 262 131 16 chr15 28031667 28031789 -73348732 + MIR SINE MIR 28 163 -99 577 302 86 5 chr15 28031905 28032127 -73348394 + MIR SINE MIR 3 242 -20 259 262 36 24 chr15 28032388 28032472 -73348049 - L3b LINE CR1 -208 1375 1291 2250 108 10 0 chr15 28033331 28033626 -73346895 - AluSx SINE Alu -14 298 1 2162 93 59 3 chr15 28035069 28035358 -73345163 - AluSx SINE Alu -7 305 1 315 0 0 0 chr15 28035425 28035460 -73345061 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 731 236 23 0 chr15 28035496 28035670 -73344851 - MER105 DNA DNA -3 201 24 1565 147 39 108 chr15 28035747 28036135 -73344386 - MER46B DNA MER2_type 0 236 1 2030 140 71 9 chr15 28036340 28036662 -73343859 - MER2 DNA MER2_type 0 344 3 21 0 0 0 chr15 28037695 28037716 -73342805 + AT_rich Low_complexity Low_complexity 1 21 0 2476 42 0 0 chr15 28038337 28038651 -73341870 - AluY SINE Alu 0 314 1 205 138 0 0 chr15 28039174 28039203 -73341318 + (TGG)n Simple_repeat Simple_repeat 1 29 0 462 317 70 5 chr15 28039296 28039482 -73341039 + MIR SINE MIR 64 261 -1 237 308 110 0 chr15 28039987 28040078 -73340443 - MIR3 SINE MIR -103 105 5 261 286 134 31 chr15 28041385 28041609 -73338912 - L1ME4a LINE L1 -1 6120 5874 32 43 0 0 chr15 28041669 28041715 -73338806 + AT_rich Low_complexity Low_complexity 1 46 0 255 266 144 29 chr15 28044185 28044463 -73336058 - L1ME4a LINE L1 -875 5271 4962 2368 90 0 3 chr15 28044859 28045159 -73335362 - AluSg1 SINE Alu -10 299 1 2011 100 0 4 chr15 28045497 28045757 -73334764 + AluSx SINE Alu 22 280 -32 189 0 0 0 chr15 28045757 28045778 -73334743 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 438 251 25 31 chr15 28045798 28045961 -73334560 - HAL1 LINE L1 -842 1665 1504 2539 71 0 10 chr15 28046562 28046873 -73333648 - AluY SINE Alu -3 308 1 1047 158 0 13 chr15 28048006 28048164 -73332357 - FRAM SINE Alu -7 159 4 947 323 122 41 chr15 28048210 28049136 -73331385 + L2 LINE L2 2222 3268 -4 2246 72 31 10 chr15 28050978 28051269 -73329252 + AluY SINE Alu 1 297 -14 1885 130 69 0 chr15 28051420 28051696 -73328825 + AluSx SINE Alu 1 295 -17 364 245 105 7 chr15 28054484 28054627 -73325894 + MIR SINE MIR 106 262 0 1034 123 7 0 chr15 28054628 28054774 -73325747 - AluSg/x SINE Alu -12 300 154 1997 91 4 4 chr15 28055907 28056161 -73324360 + AluSc SINE Alu 1 254 -55 22 0 0 0 chr15 28057603 28057625 -73322896 + AT_rich Low_complexity Low_complexity 1 22 0 1629 184 7 7 chr15 28059261 28059570 -73320951 - AluJo SINE Alu -3 309 1 565 282 79 0 chr15 28060911 28061113 -73319408 - L2 LINE L2 -1153 2161 1944 598 254 178 67 chr15 28065448 28065898 -73314623 + MLT1G LTR MaLR 41 536 -19 380 283 20 20 chr15 28065939 28066038 -73314483 + L2 LINE L2 3147 3245 -27 203 264 58 109 chr15 28066104 28066253 -73314268 - MIR SINE MIR -50 212 72 2372 105 0 3 chr15 28066253 28066566 -73313955 + AluSp SINE Alu 1 312 -1 203 264 58 109 chr15 28066566 28066590 -73313931 - MIR SINE MIR -190 72 48 24 32 0 0 chr15 28067388 28067419 -73313102 + AT_rich Low_complexity Low_complexity 1 31 0 26 64 0 0 chr15 28067837 28067884 -73312637 + AT_rich Low_complexity Low_complexity 1 47 0 283 294 49 10 chr15 28068998 28069100 -73311421 + MIR SINE MIR 86 191 -71 444 304 22 40 chr15 28069291 28069485 -73311036 - MIR SINE MIR -54 208 20 570 124 0 11 chr15 28069519 28069608 -73310913 + L1MB1 LINE L1 6078 6165 -3 4356 59 47 0 chr15 28069644 28070314 -73310207 + L1PA8A LINE L1 5144 5836 -295 267 31 0 0 chr15 28070684 28070716 -73309805 + (TG)n Simple_repeat Simple_repeat 2 33 0 560 119 0 0 chr15 28070861 28070945 -73309576 + AluS SINE Alu 1 84 -228 2336 82 3 3 chr15 28070983 28071287 -73309234 + AluY SINE Alu 1 304 -7 217 244 0 0 chr15 28071736 28071777 -73308744 + (TG)n Simple_repeat Simple_repeat 2 42 0 977 124 51 0 chr15 28072567 28072745 -73307776 + Tigger3(Golem) DNA MER2_type 2842 3028 -1 202 143 95 0 chr15 28072865 28072907 -73307614 + (CTCA)n Simple_repeat Simple_repeat 1 46 0 456 351 56 56 chr15 28072956 28073241 -73307280 - L2 LINE L2 0 3272 2988 271 352 33 0 chr15 28073531 28073622 -73306899 - L2 LINE L2 -234 3079 2986 * 833 320 142 19 chr15 28073612 28074197 -73306324 - L2 LINE L2 -924 2390 1734 188 329 13 13 chr15 28074245 28074321 -73306200 + L3b LINE CR1 1420 1495 -88 2351 74 3 26 chr15 28075348 28075659 -73304862 - AluY SINE Alu -7 304 1 382 202 73 32 chr15 28075762 28075886 -73304635 - L1MC4a LINE L1 -1909 5899 5771 2173 110 13 0 chr15 28076024 28076325 -73304196 - AluSx SINE Alu -7 305 1 336 202 35 79 chr15 28076957 28077071 -73303450 - L2 LINE L2 -1 3271 3163 490 0 0 0 chr15 28077183 28077244 -73303277 - L1PA14 LINE L1 -1 6160 6100 1199 67 7 0 chr15 28077279 28077463 -73303058 + AluY SINE Alu 134 318 0 318 283 222 6 chr15 28078507 28078687 -73301834 + L2 LINE L2 2298 2516 -798 1414 159 71 0 chr15 28078753 28078992 -73301529 - AluJo SINE Alu -13 299 44 317 346 110 2 chr15 28079159 28079387 -73301134 + L2 LINE L2 2715 2970 -302 369 340 54 14 chr15 28079407 28079554 -73300967 + MIR SINE MIR 110 262 0 427 235 38 8 chr15 28079701 28079833 -73300688 + MER104 DNA Tc2 31 166 -14 821 179 31 131 chr15 28080330 28080688 -73299833 - MER33 DNA MER1_type -1 323 2 2462 83 0 3 chr15 28080999 28081313 -73299208 + AluSq SINE Alu 1 313 0 204 351 0 0 chr15 28081395 28081452 -73299069 + L2 LINE L2 3202 3258 -14 273 57 0 0 chr15 28081526 28081561 -73298960 + (A)n Simple_repeat Simple_repeat 1 35 0 588 224 40 0 chr15 28081561 28081686 -73298835 - MER5B DNA MER1_type -48 130 1 314 186 14 14 chr15 28083505 28083575 -73296946 - L2 LINE L2 -12 3260 3191 223 268 118 81 chr15 28085313 28085559 -73294962 - L2 LINE L2 -726 2588 2334 1271 202 49 22 chr15 28086123 28086390 -73294131 + AluJo SINE Alu 1 274 -38 239 91 0 23 chr15 28086398 28086442 -73294079 + (GAAA)n Simple_repeat Simple_repeat 3 45 0 668 188 28 6 chr15 28086470 28086646 -73293875 + GA-rich Low_complexity Low_complexity 1 180 0 1585 194 0 7 chr15 28086739 28087023 -73293498 + AluJb SINE Alu 1 282 -30 349 232 123 36 chr15 28087842 28087980 -73292541 + MIR SINE MIR 113 262 0 2272 33 33 4 chr15 28089530 28089837 -73290684 + AluY SINE Alu 1 315 0 462 264 56 8 chr15 28089839 28089964 -73290557 - L2 LINE L2 -3 3310 3180 1821 189 17 44 chr15 28091201 28091660 -73288861 + L1MB8 LINE L1 5723 6169 -9 2270 91 3 0 chr15 28091924 28092240 -73288281 + AluSp SINE Alu 1 317 0 1454 68 0 0 chr15 28092419 28092610 -73287911 + L1PA5 LINE L1 5964 6154 0 430 336 96 29 chr15 28092983 28093474 -73287047 + L2 LINE L2 1754 2277 -1037 422 300 140 42 chr15 28093477 28093879 -73286642 + L2 LINE L2 2594 3085 -187 1920 71 64 21 chr15 28093879 28094160 -73286361 - AluY SINE Alu -18 293 1 422 300 140 42 chr15 28094160 28094369 -73286152 + L2 LINE L2 3085 3272 0 612 261 0 0 chr15 28094452 28094594 -73285927 + Tigger3(Golem) DNA MER2_type 1 142 -2887 429 83 0 0 chr15 28094602 28094662 -73285859 + Tigger3(Golem) DNA MER2_type 2802 2861 -168 402 314 40 105 chr15 28095310 28095680 -73284841 - L1ME4a LINE L1 -224 5897 5552 183 337 58 12 chr15 28096127 28096213 -73284308 - L2 LINE L2 -960 2354 2265 2231 101 0 19 chr15 28097943 28098259 -73282262 - AluSg SINE Alu 0 310 1 282 256 103 0 chr15 28099171 28099249 -73281272 - MIR SINE MIR -170 92 7 188 277 0 46 chr15 28099413 28099478 -73281043 - MIR SINE MIR -181 81 20 997 240 27 15 chr15 28100282 28100584 -73279937 + L1MD3 LINE L1 6123 6344 0 2130 133 0 3 chr15 28100942 28101242 -73279279 + AluSx SINE Alu 1 299 -13 300 273 227 25 chr15 28101507 28101749 -73278772 - L3 LINE CR1 -6 1571 1281 646 317 182 14 chr15 28101814 28102553 -73277968 - L2 LINE L2 0 3313 2426 335 244 115 13 chr15 28102570 28102718 -73277803 - MIR SINE MIR -63 145 32 1462 280 118 37 chr15 28103809 28104820 -73275701 - HAL1 LINE L1 -7 2500 1408 429 282 141 5 chr15 28105237 28105443 -73275078 - HAL1 LINE L1 -2253 254 21 646 179 0 0 chr15 28106459 28106571 -73273950 - MER97c DNA MER1_type? -911 179 68 544 202 101 0 chr15 28106571 28106739 -73273782 - MER53 DNA DNA -4 185 1 1949 158 0 22 chr15 28107167 28107478 -73273043 + AluJo SINE Alu 9 312 0 340 214 97 45 chr15 28107720 28107874 -73272647 + MER103 DNA DNA 2 163 -3 192 97 0 0 chr15 28108056 28108087 -73272434 + (TG)n Simple_repeat Simple_repeat 2 32 0 2237 162 52 44 chr15 28108133 28108634 -73271887 - MLT1D LTR MaLR 0 505 1 230 178 22 0 chr15 28109019 28109064 -73271457 - MIR SINE MIR -92 170 125 382 343 66 11 chr15 28109442 28109623 -73270898 + MIR SINE MIR 22 212 -50 21 0 0 0 chr15 28109817 28109838 -73270683 + AT_rich Low_complexity Low_complexity 1 21 0 352 222 141 0 chr15 28111769 28111868 -73268653 + MIR SINE MIR 66 178 -84 1682 143 19 4 chr15 28112873 28113131 -73267390 - AluJb SINE Alu -10 302 41 297 264 142 26 chr15 28113460 28113750 -73266771 + L2 LINE L2 2776 3090 -182 8046 174 25 15 chr15 28113795 28115273 -73265248 - L1PB1 LINE L1 -3 6148 4686 2056 86 47 0 chr15 28115273 28115552 -73264969 - AluY SINE Alu -19 292 1 8046 174 25 15 chr15 28115552 28115799 -73264722 - L1PB1 LINE L1 -1465 4686 4443 198 103 0 0 chr15 28115799 28115828 -73264693 + (TA)n Simple_repeat Simple_repeat 2 30 0 8046 174 25 15 chr15 28115828 28116860 -73263661 - L1PB1 LINE L1 -1708 4443 3371 251 292 56 14 chr15 28116880 28116952 -73263569 + L2 LINE L2 3121 3195 -77 2205 100 13 17 chr15 28118221 28118521 -73262000 + AluSx SINE Alu 1 299 -13 385 262 132 32 chr15 28118735 28119105 -73261416 - L1ME4a LINE L1 -1 6120 5714 529 151 0 11 chr15 28119232 28119325 -73261196 + U13 snRNA snRNA 13 104 0 285 284 0 0 chr15 28119327 28119401 -73261120 + A-rich Low_complexity Low_complexity 1 74 0 251 360 93 0 chr15 28119410 28119496 -73261025 - MER91A DNA MER1_type -10 186 93 353 270 135 44 chr15 28120155 28120407 -73260114 - L1ME4a LINE L1 -1278 4868 4594 3687 161 54 32 chr15 28120473 28121306 -73259215 - L1MB1 LINE L1 -22 6146 5296 213 209 0 0 chr15 28122689 28122732 -73257789 + MIR SINE MIR 98 140 -68 2217 101 0 0 chr15 28124893 28125209 -73255312 + AluSq SINE Alu 1 316 0 214 317 0 0 chr15 28125712 28125772 -73254749 + CT-rich Low_complexity Low_complexity 1 60 0 184 341 91 28 chr15 28128415 28128591 -73251930 - L2 LINE L2 -568 2746 2560 1599 226 12 6 chr15 28130240 28130576 -73249945 + MER58B DNA MER1_type 2 339 -2 3023 95 91 34 chr15 28131081 28131577 -73248944 - MER1A DNA MER1_type 0 527 4 189 132 0 0 chr15 28132608 28132646 -73247875 + (A)n Simple_repeat Simple_repeat 1 38 0 617 225 95 18 chr15 28132684 28132853 -73247668 + MER5A DNA MER1_type 8 189 0 329 296 55 45 chr15 28133878 28134077 -73246444 - MIR SINE MIR -58 204 4 649 290 190 16 chr15 28136406 28136727 -73243794 - L2 LINE L2 0 3313 2937 242 301 181 30 chr15 28136801 28136967 -73243554 + MIR SINE MIR 72 262 0 254 342 61 30 chr15 28137314 28137577 -73242944 + L2 LINE L2 2659 2929 -385 182 313 90 75 chr15 28137724 28137858 -73242663 + L2 LINE L2 3124 3259 -13 431 215 185 31 chr15 28141517 28141647 -73238874 - MIR SINE MIR -2 260 111 1264 253 132 17 chr15 28142975 28143567 -73236954 + Charlie7 DNA MER1_type 64 723 -1889 283 225 123 22 chr15 28143584 28143722 -73236799 + Charlie7 DNA MER1_type 2458 2609 -3 26 0 0 0 chr15 28144065 28144091 -73236430 + AT_rich Low_complexity Low_complexity 1 26 0 248 399 51 33 chr15 28144561 28144990 -73235531 + L2 LINE L2 2243 2679 -635 * 692 276 121 76 chr15 28144975 28145438 -73235083 - L2 LINE L2 -1 3312 2829 1749 137 29 14 chr15 28145693 28145970 -73234551 - AluSx SINE Alu -8 304 24 2143 125 20 0 chr15 28148666 28148971 -73231550 + AluSp SINE Alu 2 312 -1 1190 223 94 26 chr15 28149202 28149668 -73230853 + L1MC5 LINE L1 7085 7582 -379 892 153 0 0 chr15 28149806 28149943 -73230578 + FLAM_C SINE Alu 1 137 -6 270 251 113 31 chr15 28149946 28150141 -73230380 + L1MC5 LINE L1 7703 7913 -48 294 342 68 6 chr15 28150728 28150824 -73229697 + MIR SINE MIR 62 173 -89 1576 188 10 50 chr15 28150824 28151127 -73229394 - AluJb SINE Alu -21 291 1 294 342 68 6 chr15 28151127 28151191 -73229330 + MIR SINE MIR 173 232 -30 23 24 0 24 chr15 28151281 28151300 -73229221 + AT_rich Low_complexity Low_complexity 1 19 -21 1462 204 17 24 chr15 28151300 28151589 -73228932 - AluJo SINE Alu -25 287 1 23 24 0 24 chr15 28151589 28151610 -73228911 + AT_rich Low_complexity Low_complexity 19 40 0 330 302 10 10 chr15 28152491 28152587 -73227934 - L2 LINE L2 0 3313 3218 4077 206 44 38 chr15 28153461 28154012 -73226509 - L1MB1 LINE L1 -6 5986 5440 2319 95 7 0 chr15 28154012 28154318 -73226203 - AluY SINE Alu -3 308 1 4077 206 44 38 chr15 28154318 28156148 -73224373 - L1MB1 LINE L1 -552 5440 3622 2069 101 0 7 chr15 28156148 28156424 -73224097 + AluSx SINE Alu 1 274 -38 4077 206 44 38 chr15 28156424 28158618 -73221903 - L1MB1 LINE L1 -2370 3622 1300 2191 123 0 25 chr15 28158621 28158938 -73221583 - AluSx SINE Alu -3 309 1 815 130 8 0 chr15 28158947 28159070 -73221451 - AluSg/x SINE Alu -5 307 184 429 282 141 5 chr15 28159299 28159505 -73221016 - HAL1 LINE L1 -2253 254 21 1208 132 0 6 chr15 28160339 28160513 -73220008 - AluSg SINE Alu -137 173 1 1225 283 47 0 chr15 28160522 28160992 -73219529 - L1MB1 LINE L1 -4706 1185 694 404 222 17 22 chr15 28161200 28161380 -73219141 + GA-rich Low_complexity Low_complexity 2 180 0 1108 301 89 52 chr15 28161494 28162142 -73218379 - L1MB1 LINE L1 -5217 674 3 1972 131 0 10 chr15 28162830 28163121 -73217400 + AluSx SINE Alu 1 288 -24 372 22 0 0 chr15 28164976 28165021 -73215500 + (TG)n Simple_repeat Simple_repeat 2 46 0 771 158 22 0 chr15 28165550 28165689 -73214832 + LTR25 LTR ERV1 1 142 -652 439 240 73 45 chr15 28166228 28166407 -73214114 - L3b LINE CR1 -159 1424 1241 903 202 146 38 chr15 28167560 28167773 -73212748 + MER46A DNA MER2_type 1 236 0 564 204 19 19 chr15 28169514 28169668 -73210853 + MLT1C LTR MaLR 347 467 0 257 233 50 0 chr15 28169680 28169740 -73210781 - MER5A DNA MER1_type -118 71 9 1316 265 145 38 chr15 28171486 28173408 -73207113 - L1M4 LINE L1 -844 5302 3174 336 203 13 0 chr15 28173444 28173523 -73206998 + MER116 DNA Mariner 1 80 0 5741 114 15 10 chr15 28173773 28174525 -73205996 + L1PA13 LINE L1 4637 5384 -779 903 121 0 0 chr15 28174525 28174665 -73205856 + (TA)n Simple_repeat Simple_repeat 2 141 0 5741 114 15 10 chr15 28174665 28175434 -73205087 + L1PA13 LINE L1 5384 6159 -4 348 64 0 0 chr15 28176009 28176056 -73204465 + (CA)n Simple_repeat Simple_repeat 2 48 0 410 245 37 86 chr15 28176247 28176410 -73204111 - MIR SINE MIR -31 231 77 377 388 7 0 chr15 28179044 28179196 -73201325 - MIR3 SINE MIR -37 171 19 1782 109 102 18 chr15 28179308 28179583 -73200938 + AluSx SINE Alu 1 298 -14 495 308 42 0 chr15 28179613 28179756 -73200765 + MIR SINE MIR 65 213 -49 321 155 0 0 chr15 28180380 28180438 -73200083 + (TG)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chr15 28180945 28180967 -73199554 + AT_rich Low_complexity Low_complexity 1 22 0 249 33 0 0 chr15 28181880 28181910 -73198611 + (T)n Simple_repeat Simple_repeat 1 30 0 198 310 92 0 chr15 28182325 28182412 -73198109 - MIR SINE MIR -71 191 97 30 69 0 0 chr15 28182576 28182634 -73197887 + AT_rich Low_complexity Low_complexity 1 58 0 297 320 52 0 chr15 28183001 28183098 -73197423 + MIR3 SINE MIR 97 198 -10 378 0 0 0 chr15 28183134 28183176 -73197345 + (CATA)n Simple_repeat Simple_repeat 2 43 0 2258 112 0 3 chr15 28183344 28183648 -73196873 + AluSq SINE Alu 1 303 -10 748 147 177 20 chr15 28184806 28185004 -73195517 - MSTA LTR MaLR -190 238 10 2328 101 3 3 chr15 28185298 28185604 -73194917 + AluSx SINE Alu 1 306 -6 2254 104 0 0 chr15 28185721 28186018 -73194503 - AluSq SINE Alu -16 297 1 409 272 22 100 chr15 28186236 28186467 -73194054 - MIR SINE MIR -12 250 30 221 277 18 54 chr15 28186513 28186625 -73193896 + L2 LINE L2 3005 3112 -201 239 54 27 0 chr15 28186690 28186727 -73193794 + (TTA)n Simple_repeat Simple_repeat 2 39 0 420 201 128 103 chr15 28186758 28186856 -73193665 + MER3 DNA MER1_type 1 95 -114 7701 18 2 2 chr15 28186856 28188087 -73192434 + L1PA3 LINE L1 4921 6151 -4 420 201 128 103 chr15 28188087 28188192 -73192329 + MER3 DNA MER1_type 95 209 0 251 237 34 17 chr15 28188192 28188251 -73192270 + L2 LINE L2 3254 3313 0 22 0 0 0 chr15 28188304 28188326 -73192195 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr15 28188508 28188532 -73191989 + (CA)n Simple_repeat Simple_repeat 1 24 0 297 0 0 0 chr15 28188601 28188634 -73191887 + (CA)n Simple_repeat Simple_repeat 2 34 0 2147 118 0 7 chr15 28189700 28189989 -73190532 + AluSx SINE Alu 1 287 -25 198 0 0 0 chr15 28193497 28193519 -73187002 + (TGGGGG)n Simple_repeat Simple_repeat 6 27 0 222 213 0 0 chr15 28193538 28193585 -73186936 + (TGG)n Simple_repeat Simple_repeat 2 48 0 241 276 35 35 chr15 28194970 28195057 -73185464 + L2 LINE L2 3137 3223 -49 511 350 40 5 chr15 28195594 28195817 -73184704 + MIR SINE MIR 22 252 -10 374 263 53 59 chr15 28196583 28196735 -73183786 + MIR SINE MIR 91 241 -21 422 320 164 34 chr15 28196908 28197593 -73182928 + L2 LINE L2 1732 2505 -809 265 243 110 37 chr15 28197821 28197957 -73182564 + L2 LINE L2 2829 2974 -298 573 283 23 12 chr15 28199119 28199292 -73181229 - MER5B DNA MER1_type -1 177 3 184 405 51 0 chr15 28201541 28201620 -73178901 - MIR SINE MIR -160 102 20 301 300 36 9 chr15 28201725 28201835 -73178686 - MIR SINE MIR -56 206 94 319 357 53 29 chr15 28202054 28202225 -73178296 + MIR3 SINE MIR 17 191 -17 2136 106 20 0 chr15 28202445 28202738 -73177783 - AluSc SINE Alu -10 299 1 21 36 0 0 chr15 28202959 28202987 -73177534 + AT_rich Low_complexity Low_complexity 1 28 0 2414 91 0 3 chr15 28203859 28204168 -73176353 + AluY SINE Alu 2 309 -2 1625 141 20 12 chr15 28205352 28205607 -73174914 + AluSx SINE Alu 35 291 -21 2049 71 0 87 chr15 28205794 28206130 -73174391 + AluY SINE Alu 1 309 0 180 0 0 0 chr15 28206130 28206150 -73174371 + (TTA)n Simple_repeat Simple_repeat 1 20 0 267 224 30 0 chr15 28206231 28206298 -73174223 + L1ME1 LINE L1 5044 5112 -1034 506 158 40 0 chr15 28206339 28206440 -73174081 + L1MA7 LINE L1 6182 6286 -5 1637 209 11 76 chr15 28206531 28207081 -73173440 + L1ME1 LINE L1 5204 5721 -445 1561 249 14 45 chr15 28207081 28207568 -73172953 + MLT2B1 LTR ERVL 1 472 -48 261 170 0 0 chr15 28207626 28207673 -73172848 + MLT2C1 LTR ERVL 351 397 0 1357 271 25 9 chr15 28207675 28208115 -73172406 + L1ME1 LINE L1 5719 6165 -1 242 180 148 0 chr15 28209012 28209073 -73171448 + MIR SINE MIR 95 164 -98 204 40 0 0 chr15 28209563 28209588 -73170933 + (A)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr15 28211121 28211150 -73169371 + AT_rich Low_complexity Low_complexity 1 29 0 240 35 0 0 chr15 28212634 28212663 -73167858 + (T)n Simple_repeat Simple_repeat 1 29 0 195 311 22 22 chr15 28214176 28214266 -73166255 - L2 LINE L2 -505 2809 2720 272 327 83 48 chr15 28214292 28214460 -73166061 - L2 LINE L2 -701 2613 2440 205 379 133 10 chr15 28214639 28214948 -73165573 - L2 LINE L2 -961 2353 2007 2336 111 30 16 chr15 28215231 28215601 -73164920 - THE1C LTR MaLR 0 375 1 291 234 26 0 chr15 28217796 28217873 -73162648 - MER116 DNA Mariner 0 80 2 183 239 0 0 chr15 28218198 28218244 -73162277 - L2 LINE L2 0 3313 3268 420 326 26 70 chr15 28218377 28218647 -73161874 + L2 LINE L2 2577 2834 -480 189 0 0 0 chr15 28218797 28218818 -73161703 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 264 30 0 0 chr15 28218817 28218850 -73161671 + (CA)n Simple_repeat Simple_repeat 1 33 0 508 289 83 72 chr15 28218920 28219280 -73161241 + L2 LINE L2 2907 3270 -2 303 250 11 34 chr15 28220087 28220175 -73160346 + MIR SINE MIR 176 261 -1 453 292 35 14 chr15 28220771 28220915 -73159606 - MIR SINE MIR -109 153 7 187 219 0 24 chr15 28221193 28221234 -73159287 + MIR SINE MIR 223 262 0 231 330 22 22 chr15 28222046 28222137 -73158384 + MIR SINE MIR 34 124 -84 251 277 0 15 chr15 28222409 28222474 -73158047 + GA-rich Low_complexity Low_complexity 5 68 0 238 286 57 0 chr15 28222580 28222650 -73157871 - Charlie8 DNA MER1_type 0 2417 2344 262 355 51 7 chr15 28223015 28223153 -73157368 - MIR3 SINE MIR -9 199 56 2388 86 0 0 chr15 28224752 28225054 -73155467 + AluYa5 SINE Alu 1 302 -9 663 172 8 39 chr15 28225079 28225207 -73155314 + AluJb SINE Alu 1 124 -188 2126 147 0 0 chr15 28225585 28225884 -73154637 + AluSq SINE Alu 1 299 -14 276 113 0 56 chr15 28226123 28226194 -73154327 + (TCC)n Simple_repeat Simple_repeat 2 68 0 326 105 0 18 chr15 28226256 28226313 -73154208 + (TCC)n Simple_repeat Simple_repeat 2 57 0 283 200 0 0 chr15 28226313 28226368 -73154153 - Alu SINE Alu -11 289 235 566 304 32 16 chr15 28227156 28227409 -73153112 - Charlie8 DNA MER1_type -2128 289 33 12513 33 7 6 chr15 28227487 28229791 -73150730 + L1PA4 LINE L1 3828 6155 0 232 304 114 0 chr15 28230126 28230205 -73150316 + MIR SINE MIR 164 251 -11 5184 133 28 44 chr15 28230725 28231793 -73148728 + L1MA8 LINE L1 5237 6287 -4 1036 303 65 35 chr15 28233719 28234151 -73146370 + L2 LINE L2 2497 2941 -373 775 209 29 17 chr15 28234164 28234336 -73146185 - MIR SINE MIR 0 262 89 1054 204 20 95 chr15 28234343 28234469 -73146052 + L1ME1 LINE L1 5716 5850 -316 1977 109 19 0 chr15 28234469 28234735 -73145786 - AluSq SINE Alu -9 304 34 1054 204 20 95 chr15 28234735 28235009 -73145512 + L1ME1 LINE L1 5850 6089 -77 278 292 77 73 chr15 28235091 28236449 -73144072 + L1ME LINE L1 4060 5417 -747 357 311 42 30 chr15 28236454 28236621 -73143900 + L1ME LINE L1 5478 5646 -516 229 368 0 0 chr15 28237366 28237472 -73143049 + (TGG)n Simple_repeat Simple_repeat 3 108 0 549 268 61 53 chr15 28239505 28239733 -73140788 - MIR SINE MIR -10 252 23 676 243 112 0 chr15 28240492 28240661 -73139860 + MER5A DNA MER1_type 2 189 0 22 70 0 0 chr15 28240698 28240741 -73139780 + AT_rich Low_complexity Low_complexity 1 43 0 1246 199 68 61 chr15 28241289 28241685 -73138836 + LTR52 LTR ERVL 8 406 -15 1363 181 99 11 chr15 28241725 28242078 -73138443 + L1MC2 LINE L1 5961 6344 0 710 141 0 94 chr15 28242324 28242367 -73138154 + MLT1A1 LTR MaLR 2 47 -318 2255 109 0 0 chr15 28242367 28242669 -73137852 + AluSx SINE Alu 1 302 -10 710 141 0 94 chr15 28242669 28242774 -73137747 + MLT1A1 LTR MaLR 47 136 -229 2232 205 50 5 chr15 28242776 28243220 -73137301 + MER21B LTR ERV1 1 464 -399 4034 111 79 91 chr15 28243227 28244613 -73135908 - pTR5 LTR ERV1 0 2438 743 1228 201 19 30 chr15 28244614 28244882 -73135639 + MER21A LTR ERV1 550 814 -117 2086 107 34 0 chr15 28244950 28245241 -73135280 + AluSq SINE Alu 1 301 -12 245 288 88 12 chr15 28245270 28245350 -73135171 - L2 LINE L2 -18 3254 3169 287 243 112 86 chr15 28245499 28245767 -73134754 + MLT1I LTR MaLR 21 295 -114 797 126 144 29 chr15 28246591 28246765 -73133756 + MER2 DNA MER2_type 2 195 -150 296 308 13 0 chr15 28246791 28246869 -73133652 + MER2 DNA MER2_type 267 345 0 787 160 0 80 chr15 28247487 28247662 -73132859 + FRAM SINE Alu 4 164 -2 724 277 73 40 chr15 28248553 28248817 -73131704 + L1ME3 LINE L1 5201 5455 -707 2591 61 0 6 chr15 28248817 28249130 -73131391 - AluY SINE Alu 0 311 1 724 277 73 40 chr15 28249130 28249562 -73130959 + L1ME3 LINE L1 5455 5909 -253 327 317 114 72 chr15 28250136 28250609 -73129912 + L1M4 LINE L1 3729 4221 -1925 339 25 0 0 chr15 28250678 28250718 -73129803 + (CA)n Simple_repeat Simple_repeat 1 40 0 261 0 0 0 chr15 28250995 28251024 -73129497 + (CA)n Simple_repeat Simple_repeat 1 29 0 484 186 167 19 chr15 28251853 28252009 -73128512 + MER53 DNA DNA 11 189 0 780 276 11 0 chr15 28252653 28252827 -73127694 - MER5B DNA MER1_type 0 178 3 279 71 0 0 chr15 28253099 28253141 -73127380 + (TAAAAA)n Simple_repeat Simple_repeat 2 43 0 191 294 15 59 chr15 28253665 28253733 -73126788 - L3b LINE CR1 -2 1581 1517 2321 86 0 3 chr15 28254460 28254762 -73125759 + AluY SINE Alu 1 301 -10 574 217 20 124 chr15 28255178 28255208 -73125313 - MIR SINE MIR -34 228 196 360 244 98 18 chr15 28255208 28255372 -73125149 - MER104 DNA MER2_type 0 180 4 574 217 20 124 chr15 28255372 28255410 -73125111 - MIR SINE MIR -66 196 156 1724 61 0 22 chr15 28255410 28255638 -73124883 - L1PA7 LINE L1 -3 6151 5929 574 217 20 124 chr15 28255638 28255817 -73124704 - MIR SINE MIR -106 156 6 216 329 13 0 chr15 28256634 28256713 -73123808 - MIR SINE MIR -2 260 181 312 301 78 20 chr15 28256874 28257027 -73123494 + L1ME LINE L1 5658 5819 -302 351 203 0 14 chr15 28257096 28257170 -73123351 - Tigger5 DNA MER2_type 0 2323 2251 270 170 0 19 chr15 28257140 28257193 -73123328 - Tigger5 DNA MER2_type -2270 53 2 * 728 284 36 4 chr15 28257338 28257563 -73122958 + MIR SINE MIR 2 233 -29 2464 73 0 0 chr15 28257612 28257914 -73122607 - AluY SINE Alu -9 302 1 3379 245 106 45 chr15 28257915 28258901 -73121620 + L2 LINE L2 1364 2457 -857 1669 150 4 26 chr15 28258901 28259174 -73121347 + AluJo SINE Alu 29 295 -17 3379 245 106 45 chr15 28259174 28259551 -73120970 + L2 LINE L2 2457 2810 -504 1302 221 129 18 chr15 28259551 28259994 -73120527 - Charlie4a DNA MER1_type 0 508 17 768 266 101 59 chr15 28260055 28260339 -73120182 + L2 LINE L2 2872 3181 -132 2123 171 58 24 chr15 28260339 28260753 -73119768 + MSTC LTR MaLR 1 428 0 768 266 101 59 chr15 28260753 28260892 -73119629 + L2 LINE L2 3181 3313 0 507 289 37 74 chr15 28261128 28261370 -73119151 + MIR SINE MIR 8 240 -22 21 0 0 0 chr15 28261496 28261517 -73119004 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr15 28261697 28261728 -73118793 + AT_rich Low_complexity Low_complexity 1 31 0 201 250 0 0 chr15 28262293 28262337 -73118184 - MER5A DNA MER1_type -111 78 35 992 263 76 30 chr15 28262363 28262528 -73117993 - Charlie2 DNA MER1_type 0 2862 2706 1976 135 10 16 chr15 28262528 28262839 -73117682 + AluSx SINE Alu 1 309 -3 992 263 76 30 chr15 28262839 28263198 -73117323 - Charlie2 DNA MER1_type -156 2706 2314 310 255 47 9 chr15 28263249 28263355 -73117166 - Charlie2 DNA MER1_type -2523 339 230 276 274 0 32 chr15 28263399 28263494 -73117027 - Charlie2 DNA MER1_type -2657 125 34 237 211 35 18 chr15 28263540 28263597 -73116924 + MER5A DNA MER1_type 49 106 -83 286 327 91 14 chr15 28264420 28264640 -73115881 + L2 LINE L2 2589 2825 -489 221 288 41 41 chr15 28265029 28265102 -73115419 + L2 LINE L2 3239 3311 -2 468 280 163 47 chr15 28265607 28265993 -73114528 + L1M4 LINE L1 3730 4160 -1986 1201 162 51 0 chr15 28266119 28266353 -73114168 + L1MB2 LINE L1 5308 5553 -630 652 176 94 18 chr15 28266353 28266523 -73113998 + L1MB2 LINE L1 5987 6169 -2 294 115 0 0 chr15 28266531 28266583 -73113938 + L1MB4 LINE L1 6128 6179 -1 325 254 113 11 chr15 28266603 28266780 -73113741 + L1M4 LINE L1 4215 4409 -1737 263 281 68 25 chr15 28266859 28267094 -73113427 + L1M4 LINE L1 4518 4762 -1384 361 328 16 16 chr15 28267389 28267511 -73113010 - MIR SINE MIR -139 123 2 843 211 91 15 chr15 28267593 28267792 -73112729 + Tigger5 DNA MER2_type 1 214 -2109 1961 179 36 8 chr15 28267792 28268184 -73112337 + MER57A LTR ERV1 1 403 0 2877 151 26 18 chr15 28268184 28268246 -73112275 + MER57A-int LTR ERV1 1 61 -7476 5112 208 60 83 chr15 28268246 28270042 -73110479 + MER52A LTR ERV1 1 1753 -2 2877 151 26 18 chr15 28270042 28270481 -73110040 + MER57A-int LTR ERV1 61 506 -7031 356 146 0 10 chr15 28270482 28270552 -73109969 - AluS SINE Alu -240 60 7 26 82 0 0 chr15 28270641 28270702 -73109819 + AT_rich Low_complexity Low_complexity 1 61 0 3919 141 53 9 chr15 28270773 28271689 -73108832 + MER57A-int LTR ERV1 494 1451 -4495 2144 168 38 2 chr15 28271680 28272078 -73108443 + MER57A-int LTR ERV1 2218 2629 -4908 * 1178 151 0 10 chr15 28272070 28272269 -73108252 + MER57A-int LTR ERV1 2777 2973 -4564 * 3650 128 28 63 chr15 28272269 28273161 -73107360 + MER57A-int LTR ERV1 2533 3327 -2619 2201 122 58 58 chr15 28273161 28273522 -73106999 - THE1B LTR MaLR -3 361 1 3650 128 28 63 chr15 28273522 28273714 -73106807 + MER57A-int LTR ERV1 3327 3524 -2422 568 83 0 0 chr15 28273737 28273809 -73106712 + MER57A-int LTR ERV1 7078 7149 -388 717 123 23 31 chr15 28273809 28273939 -73106582 + LTR54B LTR ERV1 3 131 -367 1368 74 157 26 chr15 28273939 28274168 -73106353 + MER57A-int LTR ERV1 7279 7537 0 2351 184 8 2 chr15 28274168 28274569 -73105952 + MER57A LTR ERV1 1 403 0 1648 135 39 0 chr15 28274571 28274831 -73105690 + Tigger5 DNA MER2_type 2054 2323 0 340 256 143 12 chr15 28274972 28275222 -73105299 + L1M1 LINE L1 5248 5529 -743 413 253 123 68 chr15 28275280 28275572 -73104949 + L1MC4a LINE L1 5617 5924 -1884 222 294 20 0 chr15 28275925 28275976 -73104545 + MIR SINE MIR 19 70 -138 4259 132 22 12 chr15 28275977 28276653 -73103868 + MER50 LTR ERV1 1 683 -51 307 243 54 14 chr15 28276683 28276757 -73103764 + MIR3 SINE MIR 108 184 -24 25 0 0 0 chr15 28276844 28276869 -73103652 + AT_rich Low_complexity Low_complexity 1 25 0 234 0 0 0 chr15 28277129 28277155 -73103366 + (CAATT)n Simple_repeat Simple_repeat 1 26 0 2683 189 9 23 chr15 28277205 28277776 -73102745 + LTR27 LTR ERV1 3 627 -134 1765 197 6 24 chr15 28277780 28278110 -73102411 + LTR28 LTR ERV1 697 1020 0 581 247 84 54 chr15 28278110 28278349 -73102172 - MER21B LTR ERV1 -215 648 403 210 175 0 25 chr15 28278456 28278496 -73102025 + T-rich Low_complexity Low_complexity 5 43 0 921 229 18 31 chr15 28278496 28278719 -73101802 - MER21B LTR ERV1 -546 317 98 496 177 0 0 chr15 28278771 28278850 -73101671 - MER21B LTR ERV1 -773 90 12 2978 108 66 38 chr15 28279523 28280024 -73100497 + MER4B LTR ERV1 1 515 -95 339 143 26 52 chr15 28280036 28280113 -73100408 + L1ME3A LINE L1 4753 4827 -1319 23 33 0 0 chr15 28280259 28280289 -73100232 + AT_rich Low_complexity Low_complexity 1 30 0 2727 242 90 40 chr15 28280405 28280855 -73099666 + L1ME3A LINE L1 5216 5642 -528 2608 155 8 2 chr15 28280855 28281254 -73099267 - MER57A LTR ERV1 -2 401 1 2727 242 90 40 chr15 28281254 28281478 -73099043 + L1ME3A LINE L1 5642 5853 -317 1959 132 7 7 chr15 28281478 28281767 -73098754 + AluSx SINE Alu 1 289 -23 2727 242 90 40 chr15 28281767 28282003 -73098518 + L1ME3A LINE L1 5853 6170 0 321 312 123 13 chr15 28282031 28282185 -73098336 - MIR SINE MIR -55 207 37 231 256 8 34 chr15 28282566 28282683 -73097838 + (TGG)n Simple_repeat Simple_repeat 1 114 0 4232 166 12 15 chr15 28283344 28284096 -73096425 - L1MA7 LINE L1 -4 6287 5538 256 217 58 0 chr15 28284309 28284378 -73096143 + MIR3 SINE MIR 130 202 -6 192 163 0 0 chr15 28286002 28286045 -73094476 + (TA)n Simple_repeat Simple_repeat 2 44 0 379 259 54 18 chr15 28286731 28286843 -73093678 + L1ME LINE L1 5571 5686 -435 2381 62 0 3 chr15 28286923 28287212 -73093309 + AluY SINE Alu 1 288 -23 1025 289 79 24 chr15 28287701 28288195 -73092326 + LTR33 LTR ERVL 1 521 0 24 0 0 0 chr15 28289913 28289937 -73090584 + AT_rich Low_complexity Low_complexity 1 24 0 552 281 118 6 chr15 28290449 28290627 -73089894 - MIR SINE MIR -49 213 16 2450 84 3 0 chr15 28294577 28294888 -73085633 - AluSp SINE Alu -1 312 1 314 233 92 25 chr15 28295215 28295335 -73085186 - MIR SINE MIR -65 197 70 797 274 24 28 chr15 28295337 28295585 -73084936 - MIR SINE MIR -3 259 13 185 0 40 0 chr15 28295736 28295761 -73084760 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 201 39 0 0 chr15 28296655 28296681 -73083840 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 843 239 58 40 chr15 28296770 28296996 -73083525 - MER8 DNA MER2_type -8 231 2 2219 116 3 3 chr15 28297224 28297527 -73082994 + AluSx SINE Alu 1 303 -9 1800 168 3 3 chr15 28298316 28298614 -73081907 - AluJb SINE Alu -14 298 1 205 333 0 14 chr15 28298622 28298691 -73081830 - MIR SINE MIR -60 148 81 383 269 63 29 chr15 28299289 28299317 -73081204 + MIR SINE MIR 2 28 -234 2388 92 0 16 chr15 28299317 28299634 -73080887 + AluSx SINE Alu 1 312 0 383 269 63 29 chr15 28299634 28299780 -73080741 + MIR SINE MIR 28 182 -80 1753 146 7 27 chr15 28301623 28301918 -73078603 - AluJb SINE Alu -23 289 1 30 0 0 0 chr15 28301923 28301953 -73078568 + AT_rich Low_complexity Low_complexity 1 30 0 2808 77 0 3 chr15 28301953 28302302 -73078219 - L1PA5 LINE L1 -5 6149 5802 2131 33 24 0 chr15 28302302 28302607 -73077914 + L1P2 LINE L1 5218 5527 -628 363 286 93 28 chr15 28302699 28302881 -73077640 + MIR SINE MIR 69 262 0 2094 122 0 3 chr15 28303925 28304219 -73076302 + AluSx SINE Alu 1 293 -19 254 177 0 81 chr15 28304991 28305053 -73075468 + LTR36 LTR ERV1 139 195 -416 970 119 8 0 chr15 28305056 28305190 -73075331 + AluSq/x SINE Alu 1 135 -177 2337 94 0 0 chr15 28305190 28305489 -73075032 + AluSp SINE Alu 1 299 -14 473 281 88 36 chr15 28305489 28305852 -73074669 + LTR38B LTR ERV1 209 590 -20 540 159 44 0 chr15 28305895 28306008 -73074513 - L1MA4 LINE L1 -4 6296 6179 374 313 16 28 chr15 28306035 28306217 -73074304 + LTR67 LTR ERVL 327 506 -51 345 24 0 0 chr15 28306607 28306649 -73073872 + (TG)n Simple_repeat Simple_repeat 2 43 0 1579 137 16 4 chr15 28306649 28306689 -73073832 - AluSx SINE Alu -28 284 246 342 0 0 0 chr15 28306689 28306727 -73073794 + (TG)n Simple_repeat Simple_repeat 2 39 0 1579 137 16 4 chr15 28306727 28306935 -73073586 - AluSx SINE Alu -66 246 33 317 194 9 74 chr15 28307416 28307524 -73072997 + MER53 DNA DNA 1 101 -88 * 459 117 0 53 chr15 28307435 28307529 -73072992 - MER53 DNA DNA -10 179 91 334 198 33 77 chr15 28307709 28307800 -73072721 + MER21B LTR ERV1 3 89 -774 1726 217 173 37 chr15 28307978 28308260 -73072261 + MER21B LTR ERV1 133 375 -488 4244 145 14 5 chr15 28308260 28308889 -73071632 + MER41B LTR ERV1 1 635 0 1726 217 173 37 chr15 28308889 28309195 -73071326 + MER21B LTR ERV1 375 801 -62 849 107 38 8 chr15 28309704 28309835 -73070686 - L1PB1 LINE L1 -1 6150 6016 310 156 28 18 chr15 28310091 28310200 -73070321 + (TA)n Simple_repeat Simple_repeat 1 110 0 390 271 93 77 chr15 28310239 28310561 -73069960 + L1ME4a LINE L1 5575 5911 -210 2336 100 0 7 chr15 28310561 28310871 -73069650 + AluY SINE Alu 1 308 -3 390 271 93 77 chr15 28310871 28311084 -73069437 + L1ME4a LINE L1 5911 6119 -2 2080 125 10 6 chr15 28311858 28312169 -73068352 + AluSx SINE Alu 1 312 0 1484 61 10 10 chr15 28312195 28312392 -73068129 + L1PB1 LINE L1 5596 5792 -359 318 180 0 0 chr15 28312392 28312453 -73068068 + (TA)n Simple_repeat Simple_repeat 1 61 0 2777 90 14 0 chr15 28312453 28312818 -73067703 + L1PB1 LINE L1 5782 6151 0 21 0 0 0 chr15 28312818 28312839 -73067682 + AT_rich Low_complexity Low_complexity 1 21 0 194 302 103 26 chr15 28313948 28314064 -73066457 + L2 LINE L2 3148 3272 0 787 276 95 5 chr15 28314185 28314395 -73066126 - MIR SINE MIR -28 234 6 563 250 72 7 chr15 28314452 28314604 -73065917 - MER103 DNA DNA -2 164 3 240 190 101 38 chr15 28317032 28317111 -73063410 + MLT1H LTR MaLR 100 186 -226 233 245 77 0 chr15 28317254 28317345 -73063176 + MLT1I LTR MaLR 285 430 -20 268 349 60 7 chr15 28318479 28318628 -73061893 - MIR3 SINE MIR -5 203 47 438 302 22 7 chr15 28318711 28318850 -73061671 + MIR SINE MIR 17 157 -105 2143 133 7 0 chr15 28319666 28319974 -73060547 + AluSx SINE Alu 1 310 -2 1367 193 95 8 chr15 28320009 28320273 -73060248 - AluJo SINE Alu -25 287 1 22 35 0 0 chr15 28320504 28320533 -73059988 + AT_rich Low_complexity Low_complexity 1 29 0 1511 154 44 50 chr15 28321204 28321502 -73059019 - AluJb SINE Alu -16 296 1 251 160 40 0 chr15 28321535 28321585 -73058936 - L1MDb LINE L1 -5033 1376 1325 1969 131 0 33 chr15 28321612 28321918 -73058603 + AluJb SINE Alu 1 296 -16 489 241 136 51 chr15 28321919 28322214 -73058307 + L1MEc LINE L1 1259 1578 -4818 1993 216 38 24 chr15 28322252 28322799 -73057722 + L1MEc LINE L1 2449 3003 -3212 823 287 58 35 chr15 28322888 28323285 -73057236 + HAL1 LINE L1 480 885 -1622 524 253 66 58 chr15 28323329 28323586 -73056935 + LTR33 LTR ERVL 212 470 -51 1800 124 0 78 chr15 28323589 28323896 -73056625 + AluJb SINE Alu 3 285 -27 1293 306 83 10 chr15 28323979 28324483 -73056038 - ERVL LTR ERVL -2901 2863 2323 629 318 29 4 chr15 28324487 28324726 -73055795 + ERVL LTR ERVL 4754 4998 -766 401 196 81 82 chr15 28325032 28325249 -73055272 + MER58B DNA MER1_type 1 341 0 298 229 90 133 chr15 28325250 28325551 -73054970 + L1ME4a LINE L1 5590 5877 -244 1133 95 73 6 chr15 28325962 28326141 -73054380 + MER30 DNA MER1_type 2 192 -38 295 364 41 26 chr15 28326337 28326532 -73053989 + L2 LINE L2 2715 2912 -402 268 293 0 27 chr15 28327100 28327175 -73053346 + CT-rich Low_complexity Low_complexity 4 76 0 271 281 75 69 chr15 28327558 28327718 -73052803 + L2 LINE L2 3151 3311 -2 874 244 57 18 chr15 28327828 28328057 -73052464 + MIR SINE MIR 23 260 -2 289 316 75 8 chr15 28330035 28330168 -73050353 + ERVL LTR ERVL 5176 5317 -447 303 71 0 0 chr15 28330878 28330920 -73049601 + (CA)n Simple_repeat Simple_repeat 1 42 0 231 306 166 25 chr15 28331086 28331243 -73049278 + L2 LINE L2 1930 2108 -1206 659 175 169 42 chr15 28331250 28331439 -73049082 - MER20 DNA MER1_type -6 213 1 1677 287 123 13 chr15 28331439 28332346 -73048175 + L2 LINE L2 2110 3108 -205 21 0 0 0 chr15 28333772 28333793 -73046728 + AT_rich Low_complexity Low_complexity 1 21 0 3022 98 22 2 chr15 28334000 28334447 -73046074 + L1PA14 LINE L1 5706 6161 0 246 304 14 0 chr15 28334540 28334609 -73045912 + L2 LINE L2 3203 3272 0 414 331 77 17 chr15 28334656 28334943 -73045578 + L1ME4a LINE L1 5564 5867 -254 226 239 131 8 chr15 28334991 28335121 -73045400 + L1ME4a LINE L1 5964 6109 -12 21 0 0 0 chr15 28335814 28335835 -73044686 + AT_rich Low_complexity Low_complexity 1 21 0 3098 184 79 10 chr15 28335850 28336569 -73043952 + L1MB7 LINE L1 5416 6184 0 369 275 137 47 chr15 28336679 28336890 -73043631 + L1ME4a LINE L1 5669 5898 -223 23 0 0 0 chr15 28336890 28336913 -73043608 + AT_rich Low_complexity Low_complexity 1 23 0 250 292 135 22 chr15 28339639 28339824 -73040697 - L2 LINE L2 -2 3311 3106 231 36 0 0 chr15 28340089 28340117 -73040404 + (CA)n Simple_repeat Simple_repeat 1 28 0 1309 149 103 0 chr15 28340940 28341182 -73039339 + MER57A LTR ERV1 135 401 -2 221 286 175 26 chr15 28341389 28341543 -73038978 + MIR SINE MIR 86 262 0 361 299 31 67 chr15 28344530 28344724 -73035797 - MIR SINE MIR -45 217 31 2047 125 7 13 chr15 28346140 28346445 -73034076 - AluSc SINE Alu -6 303 1 492 222 170 0 chr15 28347503 28347656 -73032865 - MIR SINE MIR -6 256 78 308 293 217 29 chr15 28347661 28348006 -73032515 + L2 LINE L2 2409 2818 -496 560 317 104 7 chr15 28348387 28348879 -73031642 - MLT1K LTR MaLR -4 584 11 339 154 0 46 chr15 28349105 28349170 -73031351 - MER5B DNA MER1_type -108 70 9 353 258 195 32 chr15 28349759 28349949 -73030572 + MIR SINE MIR 41 261 -1 1062 121 7 0 chr15 28350176 28350316 -73030205 + AluSq/x SINE Alu 5 145 -168 214 250 15 44 chr15 28351664 28351732 -73028789 - L2 LINE L2 -22 3250 3185 210 296 21 7 chr15 28352534 28352622 -73027899 + GA-rich Low_complexity Low_complexity 2 144 0 2722 128 68 91 chr15 28353167 28353759 -73026762 - LTR12 LTR ERV1 -136 578 1 348 248 165 0 chr15 28354199 28354332 -73026189 - MIR SINE MIR -81 181 27 1999 96 0 116 chr15 28354402 28354746 -73025775 - AluY SINE Alu -7 304 1 251 262 105 5 chr15 28354990 28355200 -73025321 + L1ME LINE L1 5639 5869 -252 25 0 0 0 chr15 28355412 28355437 -73025084 + AT_rich Low_complexity Low_complexity 1 25 0 348 318 31 24 chr15 28355457 28355636 -73024885 + MIR SINE MIR 32 210 -52 2078 106 26 23 chr15 28355662 28355964 -73024557 + AluSx SINE Alu 1 303 -9 330 275 22 51 chr15 28357853 28357991 -73022530 + MIR3 SINE MIR 6 139 -69 351 301 116 14 chr15 28358063 28358209 -73022312 + MIR3 SINE MIR 5 165 -43 1772 165 34 3 chr15 28358566 28358863 -73021658 - AluJo SINE Alu -6 306 1 2266 112 0 0 chr15 28359334 28359629 -73020892 + AluSx SINE Alu 1 295 -17 484 225 7 106 chr15 28360497 28360648 -73019873 + L2 LINE L2 3173 3308 -5 2435 88 0 0 chr15 28361421 28361729 -73018792 + AluSx SINE Alu 2 309 -3 519 319 35 26 chr15 28362463 28362689 -73017832 + MIR SINE MIR 9 236 -26 2043 108 17 3 chr15 28363929 28364226 -73016295 + AluY SINE Alu 1 301 -10 27 29 0 0 chr15 28364618 28364652 -73015869 + AT_rich Low_complexity Low_complexity 1 34 0 387 0 0 0 chr15 28364808 28364851 -73015670 + (CA)n Simple_repeat Simple_repeat 2 44 0 243 294 160 112 chr15 28365144 28365413 -73015108 - L2 LINE L2 -75 3197 2916 449 263 81 60 chr15 28365463 28365774 -73014747 - L1MC/D LINE L1 -743 5403 5152 23 0 0 0 chr15 28365774 28365797 -73014724 + AT_rich Low_complexity Low_complexity 1 23 0 363 302 18 12 chr15 28365856 28366025 -73014496 - L1MC/D LINE L1 -1090 5056 4887 419 243 45 0 chr15 28366072 28366183 -73014338 - LTR16A LTR ERVL -5 445 330 274 310 28 7 chr15 28366467 28366609 -73013912 - LTR16A1 LTR ERVL -312 145 1 623 310 170 11 chr15 28366666 28367108 -73013413 - L3 LINE CR1 -388 1189 678 263 355 47 9 chr15 28368047 28368154 -73012367 - L2 LINE L2 0 3272 3162 2494 58 0 7 chr15 28369003 28369311 -73011210 + AluY SINE Alu 1 306 -5 922 150 0 0 chr15 28370626 28370766 -73009755 - AluSg/x SINE Alu -14 298 159 2029 115 27 3 chr15 28371549 28371844 -73008677 + AluSg SINE Alu 9 310 0 24 32 0 0 chr15 28372001 28372032 -73008489 + AT_rich Low_complexity Low_complexity 1 31 0 542 275 134 29 chr15 28373045 28373358 -73007163 + LTR33 LTR ERVL 13 358 -163 625 264 25 15 chr15 28374015 28374212 -73006309 - L1MC/D LINE L1 -1997 5811 5613 541 361 31 35 chr15 28427169 28427648 -72952873 - L3 LINE CR1 -12 1565 1089 239 264 0 0 chr15 28427867 28427920 -72952601 - LTR67 LTR ERVL -15 542 490 346 123 71 42 chr15 28431656 28431758 -72948763 + FRAM/FAM SINE Alu 26 65 -101 2212 84 44 3 chr15 28432863 28433160 -72947361 - AluSg SINE Alu -1 309 1 39 38 0 0 chr15 28433443 28433496 -72947025 + AT_rich Low_complexity Low_complexity 1 53 0 1366 133 62 8 chr15 28433502 28433743 -72946778 + MER21A LTR ERV1 11 264 -667 2429 138 45 96 chr15 28433748 28434279 -72946242 + MER21A LTR ERV1 376 879 -52 1219 135 157 26 chr15 28434453 28434683 -72945838 - AluJo SINE Alu 0 312 53 2054 132 7 0 chr15 28434731 28435055 -72945466 + AluSx SINE Alu 1 326 0 249 341 99 2 chr15 28435673 28435835 -72944686 + MIR SINE MIR 38 213 -49 1771 177 0 13 chr15 28435838 28436143 -72944378 + AluJb SINE Alu 1 301 -11 1019 94 0 0 chr15 28436461 28436589 -72943932 + AluSg SINE Alu 6 133 -177 2267 119 0 0 chr15 28436589 28436892 -72943629 + AluSg SINE Alu 1 303 -7 942 225 38 4 chr15 28437352 28437588 -72942933 - MIR SINE MIR -1 261 18 445 233 29 0 chr15 28437774 28437877 -72942644 + MIR SINE MIR 38 143 -119 2171 123 0 10 chr15 28438086 28438387 -72942134 + AluSq SINE Alu 1 298 -15 287 237 284 21 chr15 28438947 28439137 -72941384 + MIR SINE MIR 23 262 0 210 246 0 29 chr15 28439806 28439875 -72940646 + L2 LINE L2 2998 3064 -208 270 237 0 0 chr15 28440874 28440933 -72939588 + L2 LINE L2 3246 3304 -9 2492 125 71 24 chr15 28441341 28441750 -72938771 + MSTA LTR MaLR 1 428 0 1925 117 0 0 chr15 28442038 28442287 -72938234 + AluSq SINE Alu 1 249 -64 881 143 52 45 chr15 28442388 28442542 -72937979 + AluJb SINE Alu 140 294 -18 209 301 129 0 chr15 28443260 28443353 -72937168 - L3 LINE CR1 -69 1508 1404 213 39 0 0 chr15 28443613 28443639 -72936882 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 2327 73 21 0 chr15 28443641 28443928 -72936593 - AluSq SINE Alu -20 293 1 1563 197 0 3 chr15 28445341 28445641 -72934880 - AluSx SINE Alu -4 308 10 490 330 82 33 chr15 28446029 28446204 -72934317 - L2 LINE L2 -607 2707 2542 1765 167 26 16 chr15 28446204 28446510 -72934011 + AluSx SINE Alu 1 309 -3 490 330 82 33 chr15 28446510 28446819 -72933702 - L2 LINE L2 -772 2542 2199 1151 257 63 6 chr15 28448483 28448814 -72931707 + LTR33 LTR ERVL 5 354 -167 1034 58 0 0 chr15 28448936 28449057 -72931464 + AluY SINE Alu 1 121 -190 2208 114 0 3 chr15 28449769 28450068 -72930453 + AluSx SINE Alu 1 298 -14 239 261 0 11 chr15 28450207 28450299 -72930222 + (CATATA)n Simple_repeat Simple_repeat 4 94 0 1505 182 56 7 chr15 28450313 28450599 -72929922 + AluJo SINE Alu 1 300 -12 363 309 109 9 chr15 28450629 28450873 -72929648 + L2 LINE L2 2784 3055 -217 2314 85 0 3 chr15 28450925 28451218 -72929303 - AluSx SINE Alu -15 297 6 313 215 87 74 chr15 28451301 28451450 -72929071 + L2 LINE L2 3163 3313 0 206 299 0 46 chr15 28452962 28453049 -72927472 - MIR SINE MIR -110 152 70 2454 81 0 0 chr15 28454911 28455207 -72925314 - AluY SINE Alu -15 296 1 205 254 29 22 chr15 28456347 28456431 -72924090 - MIR SINE MIR -62 146 90 415 175 58 19 chr15 28457183 28457286 -72923235 - MIR SINE MIR -67 141 35 2250 91 0 24 chr15 28457748 28458044 -72922477 - AluSg SINE Alu -21 289 1 1065 106 0 0 chr15 28458351 28458492 -72922029 + AluSg/x SINE Alu 164 304 -8 645 176 14 179 chr15 28458496 28458786 -72921735 - MER33 DNA MER1_type -28 296 55 4082 231 44 42 chr15 28458849 28459405 -72921116 + L1 LINE L1 1841 2394 -3752 2547 66 0 3 chr15 28459405 28459709 -72920812 + AluY SINE Alu 1 303 -8 4082 231 44 42 chr15 28459709 28459789 -72920732 + L1 LINE L1 2394 2472 -3674 2314 113 0 3 chr15 28459789 28460091 -72920430 + AluSx SINE Alu 1 301 -11 4082 231 44 42 chr15 28460091 28460475 -72920046 + L1 LINE L1 2472 2854 -3292 2259 109 3 0 chr15 28460475 28460778 -72919743 + AluSp SINE Alu 1 304 -9 4082 231 44 42 chr15 28460778 28460866 -72919655 + L1 LINE L1 2854 2940 -3206 7457 44 3 3 chr15 28460866 28462047 -72918474 + L1PA5 LINE L1 4974 6154 0 4082 231 44 42 chr15 28462047 28462464 -72918057 + L1 LINE L1 2940 3355 -2791 2025 134 3 14 chr15 28462464 28462754 -72917767 + AluJb SINE Alu 3 289 -23 546 57 0 0 chr15 28462757 28462827 -72917694 + (GA)n Simple_repeat Simple_repeat 1 70 0 4082 231 44 42 chr15 28462827 28462953 -72917568 + L1 LINE L1 3356 3600 -2546 22 0 0 0 chr15 28463283 28463305 -72917216 + AT_rich Low_complexity Low_complexity 1 22 0 530 203 64 119 chr15 28463353 28463383 -72917138 + MER102a DNA MER1_type 94 124 -1293 2097 133 0 3 chr15 28463383 28463677 -72916844 - AluSx SINE Alu -11 301 9 530 203 64 119 chr15 28463677 28463897 -72916624 + MER102a DNA MER1_type 124 330 0 1718 173 4 0 chr15 28464056 28464322 -72916199 - AluJb SINE Alu -44 268 2 2471 64 0 3 chr15 28464953 28465248 -72915273 + AluY SINE Alu 1 294 -17 304 189 0 0 chr15 28465556 28465609 -72914912 + MSTC LTR MaLR 79 131 -243 1653 165 146 19 chr15 28465629 28465992 -72914529 - MSTA LTR MaLR -19 409 1 733 195 102 29 chr15 28466003 28466208 -72914313 + MSTC LTR MaLR 179 398 -30 254 186 0 0 chr15 28466271 28466314 -72914207 + MSTC LTR MaLR 354 396 0 907 236 10 5 chr15 28466369 28466564 -72913957 - MER20 DNA MER1_type -2 217 22 2479 64 14 0 chr15 28468192 28468487 -72912034 + AluSp SINE Alu 1 299 -14 26 50 0 0 chr15 28468843 28468883 -72911638 + AT_rich Low_complexity Low_complexity 1 40 0 2253 114 3 13 chr15 28468899 28469214 -72911307 + AluSp SINE Alu 1 312 -1 2266 112 0 0 chr15 28469343 28469637 -72910884 + AluSx SINE Alu 1 294 -18 1434 221 89 35 chr15 28470555 28470981 -72909540 + LTR40c LTR ERVL 9 457 -8 560 262 77 27 chr15 28471944 28472165 -72908356 - LTR33 LTR ERVL -269 252 21 261 0 0 0 chr15 28472197 28472226 -72908295 + (CACAG)n Simple_repeat Simple_repeat 1 29 0 288 127 0 0 chr15 28472256 28472311 -72908210 + (TA)n Simple_repeat Simple_repeat 1 55 0 488 158 12 12 chr15 28472361 28472443 -72908078 + LTR41 LTR ERVL 99 180 -593 2280 152 29 31 chr15 28472866 28473319 -72907202 + L1MB4 LINE L1 5715 6166 -14 229 129 0 0 chr15 28473454 28473485 -72907036 + Alu SINE Alu 1 31 -270 1791 177 44 25 chr15 28473585 28474106 -72906415 - L1M3 LINE L1 -683 5485 4942 20831 142 23 59 chr15 28474118 28474631 -72905890 - L1MA1 LINE L1 0 7721 7191 2220 129 0 3 chr15 28474631 28474940 -72905581 - AluSx SINE Alu -3 309 2 20831 142 23 59 chr15 28474940 28475409 -72905112 - L1MA1 LINE L1 -530 7191 6707 1918 121 0 4 chr15 28475409 28475666 -72904855 - AluSx SINE Alu -22 290 35 20831 142 23 59 chr15 28475666 28476225 -72904296 - L1MA1 LINE L1 -1014 6707 6130 2034 148 10 3 chr15 28476225 28476530 -72903991 - AluSx SINE Alu -5 307 1 20831 142 23 59 chr15 28476530 28478980 -72901541 - L1MA1 LINE L1 -1591 6130 3595 498 33 0 0 chr15 28478980 28479040 -72901481 + (TG)n Simple_repeat Simple_repeat 2 61 0 20831 142 23 59 chr15 28479040 28479053 -72901468 - L1MA1 LINE L1 -4126 3595 3583 2050 134 0 7 chr15 28479053 28479351 -72901170 - AluSx SINE Alu -16 296 1 20831 142 23 59 chr15 28479351 28480669 -72899852 - L1MA1 LINE L1 -4138 3583 2220 186 43 0 0 chr15 28480669 28480692 -72899829 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2061 129 0 0 chr15 28480693 28480973 -72899548 - AluSx SINE Alu -32 280 1 20831 142 23 59 chr15 28480973 28483672 -72896849 - L1MA1 LINE L1 -5500 2221 12 1440 215 4 0 chr15 28483671 28483945 -72896576 - L1M3 LINE L1 -1188 4958 4684 * 1601 98 0 0 chr15 28484045 28484248 -72896273 - AluSx SINE Alu -109 203 1 1779 188 10 39 chr15 28484248 28484637 -72895884 + L1MB1 LINE L1 5791 6168 -21 782 179 0 26 chr15 28484689 28484845 -72895676 + L1MA10 LINE L1 6180 6331 -3 769 151 0 32 chr15 28485026 28485152 -72895369 + AluJb SINE Alu 3 124 -188 24 32 0 0 chr15 28485152 28485183 -72895338 + AT_rich Low_complexity Low_complexity 1 31 0 3570 271 146 23 chr15 28485183 28486070 -72894451 - L2 LINE L2 -90 3223 2446 2578 43 0 3 chr15 28486070 28486374 -72894147 + AluY SINE Alu 1 303 -8 3570 271 146 23 chr15 28486374 28487234 -72893287 - L2 LINE L2 -867 2446 1275 338 260 70 0 chr15 28487237 28487337 -72893184 - MIR SINE MIR -40 222 116 642 329 99 20 chr15 28488158 28488502 -72892019 + L2 LINE L2 2943 3313 0 250 209 0 0 chr15 28488529 28488572 -72891949 + MIR SINE MIR 196 238 -24 205 301 134 92 chr15 28489216 28489249 -72891272 + L2 LINE L2 2592 2622 -692 531 232 18 9 chr15 28489249 28489361 -72891160 + MER81 DNA DNA 1 113 -1 205 301 134 92 chr15 28489361 28489499 -72891022 + L2 LINE L2 2622 2753 -561 2044 137 0 7 chr15 28489499 28489805 -72890716 - AluSx SINE Alu -8 304 1 205 301 134 92 chr15 28489805 28489991 -72890530 + L2 LINE L2 2753 2965 -349 596 259 36 106 chr15 28490290 28490451 -72890070 - L2 LINE L2 -459 2855 2719 2421 99 0 3 chr15 28490451 28490764 -72889757 - AluSq SINE Alu -1 312 1 596 259 36 106 chr15 28490764 28490876 -72889645 - L2 LINE L2 -595 2719 2601 190 361 115 8 chr15 28491416 28491538 -72888983 + L2 LINE L2 2911 3045 -227 482 320 141 2 chr15 28491597 28491803 -72888718 - MIR SINE MIR -2 260 30 516 242 83 0 chr15 28491936 28492093 -72888428 + MIR SINE MIR 80 249 -13 254 282 126 10 chr15 28492084 28492187 -72888334 - L2 LINE L2 -2 3311 3197 * 253 320 68 10 chr15 28492220 28492323 -72888198 + L2 LINE L2 3162 3270 -2 935 256 99 50 chr15 28492451 28493076 -72887445 + HAL1b LINE L1 692 1347 -1 2130 138 0 10 chr15 28493246 28493558 -72886963 - AluSx SINE Alu -3 309 1 21 0 0 0 chr15 28494143 28494164 -72886357 + AT_rich Low_complexity Low_complexity 1 21 0 2316 102 3 0 chr15 28494323 28494626 -72885895 - AluSq SINE Alu -9 304 1 1038 103 21 0 chr15 28495962 28496158 -72884363 - AluSg/x SINE Alu 0 333 135 388 253 55 12 chr15 28497466 28497583 -72882938 + MIR SINE MIR 5 125 -125 465 19 0 0 chr15 28497600 28497654 -72882867 + (GA)n Simple_repeat Simple_repeat 1 54 0 292 242 30 45 chr15 28497893 28498025 -72882496 + L1ME3 LINE L1 601 730 -5340 * 1208 254 72 47 chr15 28498014 28498486 -72882035 - L1ME LINE L1 -5546 524 41 486 243 185 0 chr15 28498548 28498737 -72881784 + L1ME3 LINE L1 4076 4299 -1781 868 115 0 0 chr15 28498741 28498854 -72881667 + AluJo/FLAM SINE Alu 6 118 -194 1973 107 52 42 chr15 28498854 28499163 -72881358 - AluSx SINE Alu 0 312 1 1921 239 120 55 chr15 28499169 28499373 -72881148 + L1ME3 LINE L1 4255 4444 -1652 1606 186 3 16 chr15 28499373 28499680 -72880841 - AluJo SINE Alu -9 303 1 1921 239 120 55 chr15 28499680 28501208 -72879313 + L1ME3 LINE L1 4444 6095 -1 2099 109 0 0 chr15 28501465 28501739 -72878782 + AluSq SINE Alu 1 274 -39 2055 92 0 0 chr15 28502470 28502741 -72877780 - L1MA3 LINE L1 0 6305 6035 2547 50 0 3 chr15 28503072 28503372 -72877149 - AluY SINE Alu -12 299 1 336 303 21 49 chr15 28503779 28503977 -72876544 - MIR SINE MIR -68 194 7 183 80 0 0 chr15 28503994 28504019 -72876502 + (T)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr15 28504188 28504211 -72876310 + AT_rich Low_complexity Low_complexity 1 23 0 2520 119 31 3 chr15 28504801 28505155 -72875366 + THE1B LTR MaLR 1 364 0 2838 127 25 14 chr15 28505225 28505666 -72874855 - Tigger2 DNA MER2_type 0 2718 2273 414 174 0 0 chr15 28505656 28505725 -72874796 - Tigger2 DNA MER2_type -2649 69 1 * 544 254 29 14 chr15 28505725 28505863 -72874658 - MIR SINE MIR -76 186 47 270 81 0 0 chr15 28507405 28507442 -72873079 + (T)n Simple_repeat Simple_repeat 1 37 0 5577 135 65 19 chr15 28507753 28509193 -72871328 + L1MA4A LINE L1 4796 6300 -3 2002 146 3 3 chr15 28509652 28509960 -72870561 + AluSx SINE Alu 1 308 -4 1359 213 80 0 chr15 28509971 28510093 -72870428 + AluJo SINE Alu 1 112 -200 208 0 0 59 chr15 28510093 28510127 -72870394 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1359 213 80 0 chr15 28510127 28510267 -72870254 + AluJo SINE Alu 112 284 -28 1673 188 24 30 chr15 28510287 28510622 -72869899 + L1PA16 LINE L1 5817 6149 -17 366 23 0 0 chr15 28510641 28510684 -72869837 + (TG)n Simple_repeat Simple_repeat 2 44 0 2107 127 0 0 chr15 28510684 28510968 -72869553 - AluSx SINE Alu -28 284 1 434 167 94 10 chr15 28511080 28511176 -72869345 + MER104 DNA Tc2 74 177 -3 2369 103 0 3 chr15 28511179 28511481 -72869040 - AluSx SINE Alu -11 301 1 316 339 28 0 chr15 28511493 28511602 -72868919 + MIR SINE MIR 103 214 -48 799 246 119 25 chr15 28511602 28511846 -72868675 - MLT1D LTR MaLR -190 315 49 1234 202 107 12 chr15 28511864 28512191 -72868330 + MLT1A1 LTR MaLR 1 358 -7 233 143 0 0 chr15 28512543 28512578 -72867943 - MER5B DNA MER1_type 0 178 144 711 221 0 88 chr15 28512847 28513051 -72867470 + MER51C LTR ERV1 453 638 -2 539 193 126 30 chr15 28513051 28513186 -72867335 + MER5B DNA MER1_type 28 175 -3 1968 173 40 12 chr15 28514821 28515167 -72865354 - MLT1A1 LTR MaLR 0 365 10 1778 156 10 7 chr15 28515578 28515873 -72864648 + AluSx SINE Alu 1 296 -16 259 221 73 29 chr15 28516560 28516628 -72863893 + L2 LINE L2 3234 3304 -9 2126 96 7 14 chr15 28516682 28516964 -72863557 - AluSx SINE Alu -32 280 1 290 253 273 40 chr15 28517153 28517303 -72863218 - MIR3 SINE MIR -3 205 21 934 324 116 49 chr15 28517802 28518472 -72862049 + L3 LINE CR1 739 1453 -124 1773 141 11 11 chr15 28518511 28518824 -72861697 + AluSx SINE Alu 1 313 0 438 175 0 0 chr15 28518824 28518887 -72861634 - AluJo/FLAM SINE Alu -196 116 54 * 801 180 23 0 chr15 28518883 28519011 -72861510 + AluJb SINE Alu 164 294 -18 340 129 79 99 chr15 28519478 28519579 -72860942 - LTR33 LTR ERVL 0 521 423 831 264 206 6 chr15 28519593 28519938 -72860583 + L2 LINE L2 2900 3313 0 447 129 24 24 chr15 28520154 28520239 -72860282 - L1 LINE L1 -1563 4583 4499 212 211 28 0 chr15 28521535 28521606 -72858915 + (TA)n Simple_repeat Simple_repeat 2 74 0 496 271 77 6 chr15 28523160 28523330 -72857191 - MLT1L LTR MaLR -40 575 394 6509 38 4 5 chr15 28523380 28524154 -72856367 - L1PA5 LINE L1 0 6154 5382 371 270 43 0 chr15 28524196 28524311 -72856210 - MLT1L LTR MaLR -350 265 146 1856 144 0 29 chr15 28524673 28524986 -72855535 - AluSx SINE Alu -8 304 1 361 351 45 0 chr15 28525208 28525342 -72855179 - MIR3 SINE MIR -39 169 30 206 302 80 107 chr15 28525906 28526280 -72854241 - L2 LINE L2 -2 3270 2907 2344 106 3 0 chr15 28526294 28526605 -72853916 - AluSq SINE Alu -1 312 1 326 228 36 133 chr15 28527631 28527854 -72852667 - MLT1F LTR MaLR -2 593 197 473 170 36 27 chr15 28528270 28528382 -72852139 - L1PB4 LINE L1 -1 6155 6043 182 36 0 36 chr15 28528388 28528416 -72852105 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 2521 64 0 6 chr15 28528444 28528756 -72851765 - AluY SINE Alu -1 310 1 1744 190 98 86 chr15 28529275 28529653 -72850868 - L1MC4 LINE L1 0 8042 7653 4905 105 6 42 chr15 28529653 28530374 -72850147 + L1PA10 LINE L1 5474 6168 0 1744 190 98 86 chr15 28530374 28530533 -72849988 - L1MC4 LINE L1 -389 7653 7498 1825 105 0 0 chr15 28530536 28530775 -72849746 - AluSc SINE Alu -70 239 1 2629 111 25 8 chr15 28531074 28531442 -72849079 + THE1C LTR MaLR 1 374 -1 463 299 110 35 chr15 28531523 28531777 -72848744 + L3 LINE CR1 231 503 -1074 532 331 42 27 chr15 28532480 28532812 -72847709 + L3 LINE CR1 531 867 -710 370 303 85 69 chr15 28532842 28533231 -72847290 + L2 LINE L2 2864 3258 -14 281 293 128 37 chr15 28533633 28533797 -72846724 + L3 LINE CR1 868 1046 -531 316 313 85 45 chr15 28533898 28534074 -72846447 + MIR SINE MIR 64 246 -16 382 248 87 101 chr15 28534944 28535093 -72845428 - MIR SINE MIR -81 181 35 2091 114 0 65 chr15 28535227 28535552 -72844969 + AluSx SINE Alu 1 304 -8 642 197 14 27 chr15 28535705 28535852 -72844669 - L2 LINE L2 -2 3311 3167 259 319 0 21 chr15 28539356 28539450 -72841071 + CT-rich Low_complexity Low_complexity 1 92 0 3329 176 22 5 chr15 28540708 28540762 -72839759 + MER50 LTR ERV1 1 53 -681 464 0 18 0 chr15 28540762 28540818 -72839703 + (CA)n Simple_repeat Simple_repeat 1 57 0 3329 176 22 5 chr15 28540818 28541365 -72839156 + MER50 LTR ERV1 53 612 -122 916 51 0 58 chr15 28541371 28541508 -72839013 - AluYa5/8 SINE Alu -8 303 175 871 153 7 7 chr15 28541509 28541653 -72838868 + MER50 LTR ERV1 568 711 -23 445 293 40 20 chr15 28541912 28542062 -72838459 + MIR SINE MIR 87 239 -23 219 36 0 0 chr15 28542693 28542721 -72837800 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1667 170 33 0 chr15 28542722 28542992 -72837529 - AluJo SINE Alu -33 279 1 597 326 94 4 chr15 28543104 28543337 -72837184 + MIR SINE MIR 8 261 -1 1281 173 0 0 chr15 28543345 28543547 -72836974 - AluJo SINE Alu -26 286 85 2267 131 47 33 chr15 28543754 28544113 -72836408 - THE1B LTR MaLR 0 364 1 4434 217 76 10 chr15 28544681 28546095 -72834426 - L1MD2 LINE L1 -10 6349 4842 2143 121 0 16 chr15 28546528 28546833 -72833688 + AluSx SINE Alu 1 300 -12 1299 126 0 0 chr15 28546847 28547030 -72833491 + AluSq SINE Alu 129 311 -2 2175 119 0 6 chr15 28547079 28547444 -72833077 + AluSx SINE Alu 1 363 0 240 295 13 13 chr15 28548430 28548508 -72832013 + L1M1 LINE L1 5508 5585 -720 531 246 129 29 chr15 28548511 28548875 -72831646 + L1ME3A LINE L1 5559 5946 -216 2373 110 3 53 chr15 28548890 28549245 -72831276 - MER1B DNA MER1_type 0 337 1 557 277 218 11 chr15 28549415 28549686 -72830835 + MLT1G1 LTR MaLR 245 571 -24 2456 58 3 0 chr15 28549814 28550108 -72830413 + AluY SINE Alu 1 295 -16 356 269 11 11 chr15 28551028 28551121 -72829400 - MIR SINE MIR -119 143 51 1429 175 75 56 chr15 28551798 28551925 -72828596 - Charlie1 DNA MER1_type 0 2761 2638 2704 39 3 0 chr15 28551925 28552234 -72828287 + AluY SINE Alu 1 310 -1 1429 175 75 56 chr15 28552234 28552517 -72828004 - Charlie1 DNA MER1_type -123 2638 2343 330 250 0 0 chr15 28552515 28552579 -72827942 - Charlie1 DNA MER1_type -2690 71 8 * 203 61 30 0 chr15 28553273 28553306 -72827215 + (CA)n Simple_repeat Simple_repeat 2 35 0 1290 192 73 52 chr15 28553307 28553635 -72826886 - MLT2C1 LTR ERVL -55 342 8 707 278 71 39 chr15 28554223 28554478 -72826043 + MLT1E LTR MaLR 14 276 -317 621 186 79 21 chr15 28554488 28554628 -72825893 + MIR SINE MIR 94 241 -21 2563 49 0 0 chr15 28555259 28555563 -72824958 - AluY SINE Alu -7 304 1 225 0 0 0 chr15 28555595 28555620 -72824901 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 434 267 57 51 chr15 28556088 28556174 -72824347 + MIR SINE MIR 1 85 -177 2570 59 0 0 chr15 28556174 28556480 -72824041 - AluY SINE Alu -5 306 1 434 267 57 51 chr15 28556480 28556569 -72823952 + MIR SINE MIR 85 177 -85 1392 223 176 0 chr15 28557431 28557754 -72822767 + LTR16C LTR ERVL 100 479 -12 361 280 43 109 chr15 28557783 28557814 -72822707 - MIR SINE MIR -34 228 197 2043 123 10 3 chr15 28557814 28558116 -72822405 + AluSc SINE Alu 1 304 -5 361 280 43 109 chr15 28558116 28558295 -72822226 - MIR SINE MIR -65 197 32 200 35 35 0 chr15 28558490 28558519 -72822002 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 417 338 113 30 chr15 28558685 28559152 -72821369 - L2 LINE L2 -881 2433 1928 2510 119 8 45 chr15 28559256 28559634 -72820887 + THE1B LTR MaLR 1 364 0 335 269 138 62 chr15 28560044 28560204 -72820317 + MIR3 SINE MIR 16 187 -21 198 174 0 0 chr15 28560233 28560279 -72820242 + GA-rich Low_complexity Low_complexity 1 46 0 224 310 158 25 chr15 28561645 28561803 -72818718 - MIR SINE MIR -34 228 50 362 195 11 0 chr15 28562185 28562272 -72818249 + GA-rich Low_complexity Low_complexity 2 89 0 540 332 157 57 chr15 28564222 28564612 -72815909 + L3 LINE CR1 117 467 -1110 968 104 0 28 chr15 28564612 28564756 -72815765 - L1PA15 LINE L1 -3 6162 6023 540 332 157 57 chr15 28564756 28565033 -72815488 + L3 LINE CR1 467 715 -862 303 49 0 0 chr15 28565033 28565074 -72815447 + (CA)n Simple_repeat Simple_repeat 2 42 0 2234 75 3 37 chr15 28565076 28565370 -72815151 - AluSp SINE Alu -25 288 5 540 332 157 57 chr15 28565370 28565845 -72814676 + L3 LINE CR1 715 1378 -199 307 296 12 0 chr15 28568450 28568531 -72811990 - L3b LINE CR1 -217 1366 1285 356 291 78 48 chr15 28570595 28570801 -72809720 + L2 LINE L2 3098 3309 -4 495 87 0 0 chr15 28571688 28571757 -72808764 + (TTTTC)n Simple_repeat Simple_repeat 1 69 0 214 91 0 91 chr15 28571770 28571814 -72808707 + (CCCCCT)n Simple_repeat Simple_repeat 1 40 0 468 51 0 0 chr15 28571814 28571873 -72808648 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 1898 171 0 7 chr15 28571878 28572188 -72808333 - AluJb SINE Alu -4 308 1 466 348 70 61 chr15 28572383 28572840 -72807681 - L2 LINE L2 -3 3269 2809 237 98 0 0 chr15 28573775 28573816 -72806705 + (CCTG)n Simple_repeat Simple_repeat 2 42 0 237 352 56 0 chr15 28574121 28574229 -72806292 + L2 LINE L2 3191 3304 -9 240 346 6 19 chr15 28574877 28575039 -72805482 + CT-rich Low_complexity Low_complexity 2 161 0 197 98 24 0 chr15 28577115 28577156 -72803365 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 302 152 221 70 chr15 28577652 28577810 -72802711 + L1MEc LINE L1 1561 1742 -4654 634 304 103 43 chr15 28578311 28578922 -72801599 + L1MEc LINE L1 2439 3086 -3129 623 236 45 28 chr15 28578925 28579103 -72801418 - MER58A DNA MER1_type -3 221 41 3354 139 29 27 chr15 28579103 28579664 -72800857 + L1P LINE L1 3463 4024 -2122 203 61 30 0 chr15 28579941 28579974 -72800547 + (CA)n Simple_repeat Simple_repeat 2 35 0 1308 191 73 52 chr15 28579975 28580305 -72800216 - MLT2C1 LTR ERVL -55 342 6 707 278 71 39 chr15 28580891 28581146 -72799375 + MLT1E LTR MaLR 14 276 -317 642 189 56 21 chr15 28581156 28581299 -72799222 + MIR SINE MIR 94 241 -21 2593 46 0 0 chr15 28581930 28582234 -72798287 - AluY SINE Alu -7 304 1 225 0 0 0 chr15 28582266 28582291 -72798230 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 434 267 57 51 chr15 28582759 28582845 -72797676 + MIR SINE MIR 1 85 -177 2559 62 0 0 chr15 28582845 28583151 -72797370 - AluY SINE Alu -5 306 1 434 267 57 51 chr15 28583151 28583240 -72797281 + MIR SINE MIR 85 177 -85 1392 223 176 0 chr15 28584102 28584425 -72796096 + LTR16C LTR ERVL 100 479 -12 361 280 43 109 chr15 28584454 28584485 -72796036 - MIR SINE MIR -34 228 197 2043 123 10 3 chr15 28584485 28584787 -72795734 + AluSc SINE Alu 1 304 -5 361 280 43 109 chr15 28584787 28584966 -72795555 - MIR SINE MIR -65 197 32 200 35 35 0 chr15 28585161 28585190 -72795331 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 417 338 113 30 chr15 28585356 28585823 -72794698 - L2 LINE L2 -881 2433 1928 2533 116 8 45 chr15 28585927 28586305 -72794216 + THE1B LTR MaLR 1 364 0 335 269 138 62 chr15 28586715 28586875 -72793646 + MIR3 SINE MIR 16 187 -21 198 174 0 0 chr15 28586904 28586950 -72793571 + GA-rich Low_complexity Low_complexity 1 46 0 224 310 158 25 chr15 28588316 28588474 -72792047 - MIR SINE MIR -34 228 50 362 195 11 0 chr15 28588856 28588943 -72791578 + GA-rich Low_complexity Low_complexity 2 89 0 527 333 157 57 chr15 28590893 28591283 -72789238 + L3 LINE CR1 117 467 -1110 939 111 0 28 chr15 28591283 28591427 -72789094 - L1PA15 LINE L1 -3 6162 6023 527 333 157 57 chr15 28591427 28591704 -72788817 + L3 LINE CR1 467 715 -862 387 0 0 0 chr15 28591704 28591747 -72788774 + (CA)n Simple_repeat Simple_repeat 2 44 0 2219 78 3 37 chr15 28591749 28592043 -72788478 - AluSp SINE Alu -25 288 5 527 333 157 57 chr15 28592043 28592518 -72788003 + L3 LINE CR1 715 1378 -199 831 78 21 0 chr15 28593263 28593405 -72787116 + (TC)n Simple_repeat Simple_repeat 2 146 0 432 0 0 0 chr15 28593407 28593455 -72787066 + (CA)n Simple_repeat Simple_repeat 1 48 0 231 152 0 0 chr15 28593874 28593920 -72786601 + GA-rich Low_complexity Low_complexity 1 46 0 314 215 43 43 chr15 28594916 28595009 -72785512 + MIR SINE MIR 49 141 -121 182 225 25 0 chr15 28596182 28596222 -72784299 - MIR SINE MIR -126 136 96 2456 68 0 0 chr15 28597591 28597900 -72782621 + AluY SINE Alu 1 309 -2 808 218 35 0 chr15 28603593 28603767 -72776754 + MIR SINE MIR 83 262 0 219 275 23 23 chr15 28604810 28604917 -72775604 + MIR SINE MIR 86 191 -71 2302 161 61 17 chr15 28605105 28605514 -72775007 - MSTA LTR MaLR 0 428 2 3356 136 26 28 chr15 28605689 28606261 -72774260 - MER49 LTR ERV1 -352 571 1 220 313 176 38 chr15 28607320 28607451 -72773070 + MIR SINE MIR 1 149 -113 2077 106 3 7 chr15 28607609 28607902 -72772619 + AluSg SINE Alu 1 292 -18 186 133 0 0 chr15 28608078 28608108 -72772413 + (TATATG)n Simple_repeat Simple_repeat 3 32 0 798 226 62 54 chr15 28608158 28608460 -72772061 - L1ME3A LINE L1 -28 6142 5837 544 228 63 8 chr15 28608461 28608588 -72771933 - MER94 DNA DNA 0 134 1 23 0 0 0 chr15 28609551 28609574 -72770947 + AT_rich Low_complexity Low_complexity 1 23 0 402 210 160 8 chr15 28610059 28610178 -72770343 + L1ME4a LINE L1 5944 6080 -41 367 321 80 12 chr15 28612497 28612659 -72767862 - MIR SINE MIR -70 192 20 456 298 73 7 chr15 28613119 28613270 -72767251 + MIR SINE MIR 20 180 -82 1061 310 35 32 chr15 28613863 28614327 -72766194 - MLT1K LTR MaLR 0 588 124 354 259 256 39 chr15 28614974 28615090 -72765431 - L2 LINE L2 -9 3304 3214 1430 188 25 121 chr15 28615090 28615494 -72765027 - MLT1A1 LTR MaLR 0 365 1 354 259 256 39 chr15 28615494 28615799 -72764722 - L2 LINE L2 -99 3214 2740 361 173 39 19 chr15 28616165 28616219 -72764302 + MER53 DNA DNA 1 52 -137 4553 128 42 4 chr15 28616219 28616935 -72763586 - L1PA16 LINE L1 0 6166 5424 361 173 39 19 chr15 28616935 28616984 -72763537 + MER53 DNA DNA 52 106 -83 620 79 0 0 chr15 28617409 28617485 -72763036 - L1PA3 LINE L1 -19 6136 6061 188 67 33 0 chr15 28617489 28617519 -72763002 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 805 207 171 56 chr15 28617611 28617915 -72762606 - L1MEc LINE L1 -6014 382 44 2534 119 28 0 chr15 28618959 28619313 -72761208 - THE1B LTR MaLR 0 364 1 2150 64 50 3 chr15 28622358 28622640 -72757881 - AluY SINE Alu -16 295 1 1536 159 49 19 chr15 28622760 28623068 -72757453 + MER33 DNA MER1_type 6 322 -2 22 0 0 0 chr15 28623247 28623269 -72757252 + AT_rich Low_complexity Low_complexity 1 22 0 8859 171 27 11 chr15 28623470 28626118 -72754403 - L1PA16 LINE L1 -22 6144 3472 8173 115 18 12 chr15 28627456 28629591 -72750930 + L1PA12 LINE L1 4020 6167 -1 21 0 0 0 chr15 28629596 28629617 -72750904 + AT_rich Low_complexity Low_complexity 1 21 0 325 249 140 62 chr15 28629731 28629924 -72750597 + L1M4 LINE L1 3012 3219 -2927 1935 107 52 0 chr15 28630050 28630322 -72750199 + AluSx SINE Alu 21 306 -6 528 200 0 0 chr15 28630322 28630432 -72750089 + GA-rich Low_complexity Low_complexity 1 110 0 2495 49 7 10 chr15 28630655 28630963 -72749558 + AluY SINE Alu 1 307 -4 693 266 49 84 chr15 28630964 28631561 -72748960 + L1M4 LINE L1 3227 3802 -2344 587 234 111 19 chr15 28631548 28631766 -72748755 + L1P3 LINE L1 5545 5791 -363 * 355 181 296 82 chr15 28631787 28631815 -72748706 - MER4C LTR ERV1 -18 447 426 2512 68 0 3 chr15 28631815 28632125 -72748396 - AluY SINE Alu -2 309 1 355 181 296 82 chr15 28632125 28632339 -72748182 - MER4C LTR ERV1 -39 426 153 * 1352 139 133 51 chr15 28632309 28632625 -72747896 - MER4A LTR ERV1 -322 342 1 279 241 161 43 chr15 28632629 28632791 -72747730 + L1ME3A LINE L1 5782 5962 -208 419 300 58 90 chr15 28633184 28633488 -72747033 - L2 LINE L2 -601 2713 2424 2657 30 0 0 chr15 28633488 28633785 -72746736 + AluY SINE Alu 1 297 -14 419 300 58 90 chr15 28633785 28633890 -72746631 - L2 LINE L2 -890 2424 2317 293 244 57 148 chr15 28634300 28634319 -72746202 + MIR3 SINE MIR 35 54 -154 2192 133 52 42 chr15 28634319 28634704 -72745817 - MLT1B LTR MaLR -1 389 1 293 244 57 148 chr15 28634704 28634816 -72745705 + MIR3 SINE MIR 54 175 -33 641 164 158 64 chr15 28634816 28634919 -72745602 - MER5A DNA MER1_type -2 187 95 2205 123 0 0 chr15 28634919 28635219 -72745302 - AluSx SINE Alu -12 300 1 641 164 158 64 chr15 28635219 28635256 -72745265 - MER5A DNA MER1_type -94 95 63 198 0 0 0 chr15 28635256 28635278 -72745243 + (CTG)n Simple_repeat Simple_repeat 2 23 0 641 164 158 64 chr15 28635278 28635307 -72745214 - MER5A DNA MER1_type -126 63 1 293 244 57 148 chr15 28635307 28635350 -72745171 + MIR3 SINE MIR 175 194 -14 879 203 19 57 chr15 28635379 28635591 -72744930 - MER105 DNA DNA 0 204 1 394 294 49 60 chr15 28635733 28635917 -72744604 - MIR3 SINE MIR -15 193 12 28 0 0 0 chr15 28637194 28637222 -72743299 + AT_rich Low_complexity Low_complexity 1 28 0 181 298 0 0 chr15 28638701 28638758 -72741763 + L3 LINE CR1 782 838 -739 437 292 22 36 chr15 28638830 28638967 -72741554 - MIR SINE MIR -55 153 19 267 204 0 0 chr15 28639100 28639149 -72741372 - L2 LINE L2 0 3313 3265 606 153 0 0 chr15 28639242 28639327 -72741194 - AluJb SINE Alu -26 286 202 704 161 0 9 chr15 28640742 28640854 -72739667 + AluJo SINE Alu 42 152 -160 10421 171 32 22 chr15 28640866 28641331 -72739190 - L1MC3 LINE L1 -394 7391 6932 2250 45 4 4 chr15 28641331 28641598 -72738923 - AluY SINE Alu -16 295 29 10421 171 32 22 chr15 28641598 28642346 -72738175 - L1MC3 LINE L1 -853 6932 6193 2263 107 3 3 chr15 28642346 28642656 -72737865 - AluSq SINE Alu -3 310 1 10421 171 32 22 chr15 28642656 28643460 -72737061 - L1MC3 LINE L1 -1592 6193 5353 5290 24 15 0 chr15 28643476 28644061 -72736460 - L1PA3 LINE L1 0 6155 5562 16376 29 2 0 chr15 28644061 28645990 -72734531 + L1P LINE L1 2409 4341 -1805 535 163 69 124 chr15 28645981 28646214 -72734307 - L1MC3 LINE L1 -779 5367 5148 * 652 338 26 30 chr15 28647096 28647398 -72733123 - L2 LINE L2 -526 2788 2488 395 206 163 0 chr15 28647412 28647504 -72733017 - MER81 DNA DNA -7 107 1 2288 93 7 3 chr15 28648781 28649081 -72731440 + AluSq SINE Alu 1 301 -12 371 306 32 0 chr15 28649296 28649420 -72731101 - MIR SINE MIR -80 182 55 202 260 122 41 chr15 28649885 28650008 -72730513 - L2 LINE L2 -994 2320 2188 291 370 44 6 chr15 28650014 28650195 -72730326 + MIR SINE MIR 8 195 -67 277 259 35 0 chr15 28650453 28650538 -72729983 + MIR SINE MIR 105 192 -70 502 45 15 0 chr15 28651512 28651578 -72728943 + MER41B LTR ERV1 481 547 -88 350 272 197 19 chr15 28651953 28652111 -72728410 + MIR SINE MIR 1 187 -62 215 111 0 28 chr15 28652747 28652783 -72727738 - MIR SINE MIR -19 243 209 1056 266 80 77 chr15 28652920 28653473 -72727048 + L2 LINE L2 2520 3070 -243 378 0 0 0 chr15 28653473 28653515 -72727006 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2294 57 0 11 chr15 28653517 28653800 -72726721 - AluY SINE Alu -31 280 1 1056 266 80 77 chr15 28653800 28654015 -72726506 + L2 LINE L2 3070 3291 -22 1860 234 82 26 chr15 28654025 28654526 -72725995 - L1ME1 LINE L1 -9 6157 5629 334 325 26 0 chr15 28654547 28654661 -72725860 - MIR SINE MIR -121 141 25 504 326 22 11 chr15 28655618 28655799 -72724722 - MER5A DNA MER1_type 0 189 7 498 243 0 0 chr15 28656178 28656281 -72724240 + MIR SINE MIR 159 261 -1 270 73 0 0 chr15 28656293 28656334 -72724187 + (CAG)n Simple_repeat Simple_repeat 1 41 0 730 162 92 7 chr15 28657628 28657770 -72722751 + MER3 DNA MER1_type 15 168 -41 1883 136 71 8 chr15 28657773 28658141 -72722380 + MER3 DNA MER1_type 2234 2624 0 202 416 32 39 chr15 28659153 28659432 -72721089 + L3 LINE CR1 35 311 -1266 1115 216 25 72 chr15 28659456 28659775 -72720746 + L1MA10 LINE L1 6030 6333 -1 214 375 12 0 chr15 28659855 28659935 -72720586 + L3 LINE CR1 438 518 -1059 222 317 133 0 chr15 28659971 28660091 -72720430 + L2 LINE L2 3178 3313 0 904 301 95 6 chr15 28660167 28660516 -72720005 + L3 LINE CR1 618 997 -580 290 271 129 41 chr15 28660679 28660849 -72719672 + L3 LINE CR1 1291 1475 -102 186 352 23 11 chr15 28661703 28661791 -72718730 - MIR3 SINE MIR -31 177 89 225 0 0 0 chr15 28662218 28662243 -72718278 + (T)n Simple_repeat Simple_repeat 1 25 0 497 256 205 5 chr15 28662935 28663130 -72717391 - MIR SINE MIR -28 234 1 329 138 23 35 chr15 28663451 28663538 -72716983 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 182 223 107 116 chr15 28663764 28663876 -72716645 + L2 LINE L2 3145 3255 -17 449 266 8 31 chr15 28664794 28664922 -72715599 + L2 LINE L2 3189 3313 0 298 274 95 36 chr15 28664979 28665147 -72715374 - MIR SINE MIR -50 212 35 199 292 50 83 chr15 28665350 28665470 -72715051 - L2 LINE L2 -12 3260 3145 1911 132 3 34 chr15 28666085 28666238 -72714283 - AluSx SINE Alu -26 286 145 2419 72 7 3 chr15 28666238 28666544 -72713977 - AluY SINE Alu -4 307 1 1911 132 3 34 chr15 28666544 28666685 -72713836 - AluSx SINE Alu -167 145 1 344 331 63 7 chr15 28667222 28667364 -72713157 + MIR SINE MIR 71 220 -42 607 325 49 16 chr15 28668979 28669222 -72711299 + MIR SINE MIR 12 262 0 2184 194 28 41 chr15 28669598 28669716 -72710805 - L1ME2 LINE L1 -9 6155 6037 2468 58 0 0 chr15 28669716 28670008 -72710513 + AluY SINE Alu 1 292 -19 2184 194 28 41 chr15 28670008 28670398 -72710123 - L1ME2 LINE L1 -127 6037 5654 444 252 128 14 chr15 28670399 28670631 -72709890 - LTR16A1 LTR ERVL -193 257 1 1312 206 31 17 chr15 28670636 28670928 -72709593 - L1ME2 LINE L1 -1071 5075 4780 838 257 156 15 chr15 28671100 28671439 -72709082 - MLT1J2 LTR MaLR 0 450 64 628 226 27 54 chr15 28671513 28671699 -72708822 + MIR SINE MIR 5 185 -77 1767 142 45 24 chr15 28671726 28672015 -72708506 - AluJb SINE Alu -17 295 1 257 322 11 11 chr15 28672015 28672105 -72708416 + MIR SINE MIR 173 262 0 1858 180 0 3 chr15 28672615 28672910 -72707611 + AluJo SINE Alu 1 294 -18 2367 203 23 41 chr15 28673529 28673571 -72706950 - MLT2B3 LTR ERVL -7 547 506 222 37 0 0 chr15 28673571 28673598 -72706923 + (TG)n Simple_repeat Simple_repeat 2 28 0 204 40 0 0 chr15 28673597 28673622 -72706899 + (TC)n Simple_repeat Simple_repeat 2 26 0 2367 203 23 41 chr15 28673598 28673621 -72706900 - MLT2B3 LTR ERVL -48 506 484 189 0 0 0 chr15 28673621 28673642 -72706879 + (TA)n Simple_repeat Simple_repeat 2 22 0 2367 203 23 41 chr15 28673642 28674156 -72706365 - MLT2B3 LTR ERVL -70 484 1 205 233 105 58 chr15 28674910 28674996 -72705525 + L2 LINE L2 2583 2672 -642 377 325 63 0 chr15 28675139 28675265 -72705256 - MIR3 SINE MIR -10 198 65 * 394 238 162 0 chr15 28675264 28675369 -72705152 + L2 LINE L2 3188 3309 -4 2231 114 7 0 chr15 28676253 28676551 -72703970 - AluSx SINE Alu -8 304 5 225 283 0 0 chr15 28676584 28676644 -72703877 + L1MC/D LINE L1 5809 5868 -1940 1054 164 11 6 chr15 28677490 28677667 -72702854 - L1PA16 LINE L1 -16 6150 5973 2265 123 6 0 chr15 28677667 28677992 -72702529 + L1PA16 LINE L1 5614 5940 -226 23 0 0 0 chr15 28678364 28678387 -72702134 + AT_rich Low_complexity Low_complexity 1 23 0 198 60 120 0 chr15 28678387 28678437 -72702084 + (TTATA)n Simple_repeat Simple_repeat 2 57 0 46 0 0 0 chr15 28678437 28678483 -72702038 + AT_rich Low_complexity Low_complexity 1 46 0 1355 158 22 29 chr15 28678483 28678535 -72701986 - L1MA8 LINE L1 -23 6268 6217 189 0 0 0 chr15 28678535 28678556 -72701965 + (CA)n Simple_repeat Simple_repeat 1 21 0 1355 158 22 29 chr15 28678556 28678781 -72701740 - L1MA8 LINE L1 -74 6217 5993 1964 156 0 6 chr15 28679613 28679939 -72700582 - AluJo SINE Alu 0 324 1 193 71 0 0 chr15 28679939 28679954 -72700567 + (TTTTC)n Simple_repeat Simple_repeat 3 180 0 3965 153 31 15 chr15 28680487 28680777 -72699744 - L1MB2 LINE L1 -39 6132 5848 2538 70 0 6 chr15 28680777 28681089 -72699432 - AluY SINE Alu 0 311 2 3965 153 31 15 chr15 28681089 28681473 -72699048 - L1MB2 LINE L1 -323 5848 5447 992 259 162 56 chr15 28681478 28682244 -72698277 + HAL1 LINE L1 802 1648 -859 278 291 7 74 chr15 28682683 28682831 -72697690 + HAL1b LINE L1 750 887 -461 2748 32 48 0 chr15 28682855 28683170 -72697351 + L1PA4 LINE L1 5822 6151 -4 434 264 54 62 chr15 28683237 28683479 -72697042 + HAL1 LINE L1 2267 2506 -1 194 0 0 37 chr15 28684200 28684227 -72696294 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1910 229 60 36 chr15 28684484 28685033 -72695488 + MER68 LTR ERV1 1 562 0 2425 74 3 0 chr15 28685279 28685576 -72694945 + AluY SINE Alu 1 298 -13 611 332 131 13 chr15 28685750 28686139 -72694382 + L2 LINE L2 2859 3293 -20 1356 282 55 9 chr15 28686274 28686714 -72693807 - LTR16C LTR ERVL -29 462 3 602 314 67 9 chr15 28687775 28687998 -72692523 - MIR SINE MIR -6 256 21 381 184 9 64 chr15 28688856 28688985 -72691536 - MER5B DNA MER1_type -34 144 42 562 196 0 0 chr15 28689738 28689830 -72690691 + MER2 DNA MER2_type 8 99 -246 341 217 0 0 chr15 28689830 28689890 -72690631 - MER2 DNA MER2_type -1 344 285 230 154 26 0 chr15 28689882 28689921 -72690600 - MER8 DNA MER2_type -97 142 103 * 444 192 13 0 chr15 28690494 28690572 -72689949 + MADE1 DNA Mariner 2 80 0 348 311 0 0 chr15 28690587 28690690 -72689831 - Charlie8 DNA MER1_type -2127 290 188 1446 124 19 47 chr15 28691009 28691267 -72689254 - MER49 LTR ERV1 0 923 673 259 269 172 18 chr15 28691929 28692096 -72688425 - MIR SINE MIR -50 212 21 249 281 16 0 chr15 28692326 28692390 -72688131 - L2 LINE L2 -3 3269 3205 430 339 108 14 chr15 28692760 28693046 -72687475 - L2 LINE L2 -644 2670 2358 218 300 77 39 chr15 28694149 28694279 -72686242 - L2 LINE L2 -449 2865 2731 3893 166 41 26 chr15 28694425 28695155 -72685366 - L1MB4 LINE L1 -12 6168 5428 731 271 84 0 chr15 28695557 28695771 -72684750 + MIR SINE MIR 2 233 -29 647 190 124 0 chr15 28696266 28696387 -72684134 + FLAM_A SINE Alu 1 136 -6 2566 46 0 3 chr15 28697072 28697374 -72683147 - AluY SINE Alu -8 303 3 282 271 171 0 chr15 28698004 28698144 -72682377 - MIR SINE MIR -58 204 41 1601 204 33 46 chr15 28698156 28698524 -72681997 - MLT1A1 LTR MaLR -2 363 1 632 210 118 0 chr15 28698762 28698881 -72681640 + FLAM_A SINE Alu 1 133 0 4885 156 23 10 chr15 28701560 28702330 -72678191 - LTR39 LTR ERV1 0 783 4 299 267 98 0 chr15 28702485 28702587 -72677934 + L1ME LINE L1 5484 5594 -527 1503 180 0 11 chr15 28702915 28703176 -72677345 + AluJb SINE Alu 1 258 -54 225 94 0 0 chr15 28704022 28704054 -72676467 + (T)n Simple_repeat Simple_repeat 1 32 0 1108 139 42 0 chr15 28704060 28704103 -72676418 - AluSg SINE Alu -137 173 133 261 0 0 0 chr15 28704103 28704132 -72676389 + (TG)n Simple_repeat Simple_repeat 2 30 0 1108 139 42 0 chr15 28704132 28704254 -72676267 - AluSg SINE Alu -177 133 1 980 89 0 57 chr15 28706234 28706250 -72674271 - L1PA13 LINE L1 0 6163 6148 2417 72 0 10 chr15 28706250 28706554 -72673967 - AluY SINE Alu -10 301 1 980 89 0 57 chr15 28706554 28706694 -72673827 - L1PA13 LINE L1 -15 6148 6016 267 274 109 50 chr15 28706715 28707013 -72673508 - L1PA8A LINE L1 -241 5929 5608 1584 98 288 176 chr15 28707017 28707556 -72672965 - LTR12 LTR ERV1 -115 599 1 399 262 136 43 chr15 28707666 28707933 -72672588 - L1MC/D LINE L1 -747 5399 5158 2197 112 0 16 chr15 28707933 28708238 -72672283 - AluSg SINE Alu -10 300 1 399 262 136 43 chr15 28708238 28708495 -72672026 - L1MC/D LINE L1 -988 5158 4889 351 0 0 0 chr15 28708552 28708591 -72671930 + (TG)n Simple_repeat Simple_repeat 1 39 0 463 272 119 53 chr15 28708603 28708846 -72671675 - MLT1J LTR MaLR -22 489 231 1302 180 44 0 chr15 28709169 28709419 -72671102 - AluJo SINE Alu -14 298 38 1548 138 55 75 chr15 28709545 28709892 -72670629 - L1MA7 LINE L1 -85 6206 5867 523 205 59 96 chr15 28709952 28710191 -72670330 - L1MC/D LINE L1 -1440 4706 4477 321 280 127 21 chr15 28710521 28710710 -72669811 - L1MC/D LINE L1 -1744 4402 4194 420 319 27 16 chr15 28711077 28711265 -72669256 + MIR SINE MIR 69 258 -4 1862 171 3 0 chr15 28711440 28711727 -72668794 + AluJb SINE Alu 1 288 -24 1048 196 52 0 chr15 28711862 28712056 -72668465 + MER20 DNA MER1_type 1 204 -15 545 320 30 39 chr15 28712806 28713037 -72667484 - MIR SINE MIR -21 241 13 2088 128 3 3 chr15 28714411 28714709 -72665812 + AluSx SINE Alu 1 298 -14 1144 329 100 35 chr15 28715872 28716243 -72664278 - L2 LINE L2 -17 3296 2950 928 9 38 0 chr15 28716243 28716349 -72664172 + L1PA4 LINE L1 6046 6155 0 1144 329 100 35 chr15 28716349 28716901 -72663620 - L2 LINE L2 -363 2950 2305 450 0 0 0 chr15 28717099 28717149 -72663372 + (CA)n Simple_repeat Simple_repeat 2 51 0 2564 114 29 16 chr15 28717806 28718191 -72662330 - MLT1B LTR MaLR 0 390 1 758 184 149 6 chr15 28719059 28719233 -72661288 - MER3 DNA MER1_type -6 203 5 248 188 14 72 chr15 28719340 28719409 -72661112 - MIR SINE MIR -140 122 58 21 36 0 0 chr15 28719409 28719437 -72661084 + AT_rich Low_complexity Low_complexity 1 28 0 1043 269 121 33 chr15 28720475 28720961 -72659560 - MLT1F LTR MaLR -3 539 11 216 0 0 0 chr15 28721522 28721546 -72658975 + (A)n Simple_repeat Simple_repeat 1 24 0 370 324 170 16 chr15 28722477 28722659 -72657862 + MIR SINE MIR 47 256 -6 229 354 131 0 chr15 28723236 28723366 -72657155 - MIR SINE MIR -75 187 41 802 301 37 8 chr15 28724001 28724247 -72656274 - MIR SINE MIR -8 254 2 538 333 184 31 chr15 28725903 28727086 -72653435 - L2 LINE L2 -2 3270 1877 470 353 46 9 chr15 28727497 28727715 -72652806 - L3b LINE CR1 -160 1423 1198 3455 148 73 5 chr15 28728703 28729303 -72651218 + L1MA6 LINE L1 5660 6300 0 2132 122 114 150 chr15 28729473 28730007 -72650514 + MLT2B2 LTR ERVL 1 515 0 259 269 55 76 chr15 28730499 28730644 -72649877 + MER5B DNA MER1_type 35 176 -2 218 314 29 0 chr15 28732012 28732082 -72648439 + L2 LINE L2 3201 3272 0 262 279 100 57 chr15 28732099 28732239 -72648282 + MIR SINE MIR 80 225 -37 2706 33 0 0 chr15 28732375 28732678 -72647843 - AluY SINE Alu -8 303 1 275 344 43 31 chr15 28733207 28733370 -72647151 + L2 LINE L2 3043 3207 -65 1817 107 75 21 chr15 28734331 28734611 -72645910 + AluJb SINE Alu 1 295 -17 952 301 115 25 chr15 28735445 28735881 -72644640 - L2 LINE L2 -2 3311 2837 249 128 0 0 chr15 28735891 28735938 -72644583 + LTR66 LTR ERVL 393 439 -171 240 191 36 0 chr15 28735940 28736024 -72644497 + (TA)n Simple_repeat Simple_repeat 1 87 0 3363 166 32 44 chr15 28736057 28736950 -72643571 - L1MA9 LINE L1 -37 6283 5454 2092 255 77 71 chr15 28736980 28737814 -72642707 - L2 LINE L2 -507 2807 1969 196 268 18 71 chr15 28738020 28738132 -72642389 + MIR SINE MIR 83 188 -74 245 317 114 24 chr15 28738233 28738356 -72642165 - L2 LINE L2 -1 3312 3179 746 256 101 9 chr15 28739491 28739718 -72640803 + MIR SINE MIR 15 262 0 183 280 242 15 chr15 28739723 28739855 -72640666 + MIR SINE MIR 101 262 0 714 250 95 0 chr15 28740294 28740494 -72640027 + MIR SINE MIR 41 259 -3 284 193 0 5 chr15 28745624 28745678 -72634843 - MLT2C1 LTR ERVL 0 397 351 246 220 0 0 chr15 28745678 28745737 -72634784 + (TGGG)n Simple_repeat Simple_repeat 4 62 0 1722 210 26 6 chr15 28745738 28746091 -72634430 - MLT2C1 LTR ERVL -37 427 1 212 31 62 0 chr15 28746477 28746509 -72634012 + T-rich Low_complexity Low_complexity 2 35 0 254 296 136 30 chr15 28746515 28746647 -72633874 + MIR3 SINE MIR 1 146 -62 2202 124 67 6 chr15 28746748 28747063 -72633458 - MER1B DNA MER1_type 0 337 4 793 236 100 22 chr15 28747063 28747292 -72633229 + MIR SINE MIR 15 261 -1 233 288 85 8 chr15 28747301 28747419 -72633102 + MIR SINE MIR 91 217 -45 2648 51 0 0 chr15 28749030 28749341 -72631180 + AluY SINE Alu 1 311 0 203 306 109 48 chr15 28750939 28751086 -72629435 - MIR SINE MIR -10 252 97 820 244 65 30 chr15 28751619 28751849 -72628672 + MIR SINE MIR 4 241 -21 187 267 0 0 chr15 28751875 28751920 -72628601 + L2 LINE L2 3217 3261 -11 2413 261 74 51 chr15 28752105 28752915 -72627606 - L1MEc LINE L1 -3319 2896 2105 2256 102 0 13 chr15 28752915 28753218 -72627303 - AluSx SINE Alu -13 299 1 2413 261 74 51 chr15 28753218 28753838 -72626683 - L1MEc LINE L1 -4110 2105 1500 1973 127 3 0 chr15 28753838 28754155 -72626366 - AluSq SINE Alu 0 318 1 2413 261 74 51 chr15 28754155 28754914 -72625607 - L1MEc LINE L1 -4715 1500 707 393 301 8 15 chr15 28755426 28755559 -72624962 - L1MEc LINE L1 -5933 272 141 726 311 223 31 chr15 28756102 28757571 -72622950 - L2 LINE L2 -841 2473 724 1286 209 149 30 chr15 28757594 28757991 -72622530 - MLT1C LTR MaLR -9 458 15 1938 150 0 7 chr15 28758352 28758652 -72621869 + AluSx SINE Alu 1 298 -14 2061 99 7 7 chr15 28760010 28760315 -72620206 + AluSc SINE Alu 1 305 0 253 307 129 0 chr15 28760468 28760569 -72619952 + MIR SINE MIR 37 150 -58 4928 119 21 6 chr15 28760649 28761362 -72619159 - L1PA14 LINE L1 -2 6159 5436 227 339 55 28 chr15 28761873 28761982 -72618539 + L3b LINE CR1 1457 1568 -15 191 294 24 71 chr15 28762447 28762532 -72617989 - MER5A DNA MER1_type -102 87 7 663 240 0 0 chr15 28765240 28765361 -72615160 + FLAM_A SINE Alu 1 121 -12 246 105 0 0 chr15 28765361 28765399 -72615122 + (ATG)n Simple_repeat Simple_repeat 2 39 0 359 301 62 7 chr15 28766827 28766973 -72613548 + MIR SINE MIR 77 230 -32 193 133 89 0 chr15 28768116 28768161 -72612360 - L2 LINE L2 -2 3311 3263 385 352 26 16 chr15 28768818 28769011 -72611510 + L2 LINE L2 2468 2662 -652 5948 129 56 28 chr15 28769019 28770417 -72610104 - L1MA5 LINE L1 -5 6295 4850 196 248 0 48 chr15 28770611 28770756 -72609765 + CT-rich Low_complexity Low_complexity 2 139 0 560 328 55 30 chr15 28771032 28771267 -72609254 - MIR SINE MIR -11 251 11 208 337 81 23 chr15 28771527 28771613 -72608908 - L2 LINE L2 -48 3224 3134 1081 215 87 4 chr15 28774159 28774401 -72606120 + MIR SINE MIR 1 262 0 730 322 54 56 chr15 28775762 28776509 -72604012 + L2 LINE L2 2437 3182 -90 2381 75 0 3 chr15 28776936 28777230 -72603291 - AluY SINE Alu -18 293 1 357 206 134 21 chr15 28779213 28779310 -72601211 + MIR SINE MIR 85 192 -70 30 59 0 0 chr15 28779629 28779680 -72600841 + AT_rich Low_complexity Low_complexity 1 51 0 2295 71 0 4 chr15 28779806 28780107 -72600414 + AluY SINE Alu 1 300 0 190 318 112 9 chr15 28781596 28781703 -72598818 + MIR3 SINE MIR 69 186 -22 26 0 0 0 chr15 28781960 28781986 -72598535 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr15 28782085 28782108 -72598413 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr15 28782706 28782728 -72597793 + (A)n Simple_repeat Simple_repeat 1 22 0 2714 23 0 7 chr15 28783147 28783454 -72597067 - AluY SINE Alu -6 305 1 2458 58 0 10 chr15 28786096 28786391 -72594130 + AluY SINE Alu 1 292 -19 298 212 47 12 chr15 28786411 28786496 -72594025 - L1MA4 LINE L1 -5 6295 6208 1920 143 27 0 chr15 28787718 28788012 -72592509 - AluSx SINE Alu -10 302 1 2115 135 0 10 chr15 28788359 28788670 -72591851 - AluSg SINE Alu -2 308 1 309 284 61 20 chr15 28789001 28789149 -72591372 - L1MC4 LINE L1 -1124 6918 6765 281 257 115 158 chr15 28790899 28791082 -72589439 + MER5B DNA MER1_type 3 177 -1 2051 125 0 30 chr15 28793349 28793654 -72586867 + AluSx SINE Alu 1 296 -16 3673 89 105 0 chr15 28794402 28794928 -72585593 + LTR12 LTR ERV1 1 581 -133 251 316 90 57 chr15 28795660 28795992 -72584529 - L1ME LINE L1 -224 5897 5555 274 293 92 18 chr15 28796063 28796227 -72584294 - L1ME LINE L1 -2337 5471 5296 24 32 0 0 chr15 28796448 28796479 -72584042 + AT_rich Low_complexity Low_complexity 1 31 0 286 256 64 39 chr15 28796772 28796975 -72583546 - L1ME LINE L1 -1481 4665 4458 261 309 81 22 chr15 28797930 28798066 -72582455 + MIR SINE MIR 20 163 -99 987 284 179 20 chr15 28798072 28798512 -72582009 - L2 LINE L2 0 3313 2804 566 231 46 67 chr15 28798523 28798649 -72581872 + MER58C DNA MER1_type 10 137 -2283 189 0 0 0 chr15 28798649 28798670 -72581851 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 2069 119 3 23 chr15 28798676 28798979 -72581542 + AluSx SINE Alu 1 297 -15 566 231 46 67 chr15 28798979 28799040 -72581481 + MER58C DNA MER1_type 142 200 -15 1043 244 64 33 chr15 28799050 28799411 -72581110 - L2 LINE L2 -504 2810 2439 293 276 181 0 chr15 28799972 28800077 -72580444 + MIR SINE MIR 1 124 -138 303 271 37 56 chr15 28802264 28802371 -72578150 + L2 LINE L2 3160 3264 -8 52 17 0 0 chr15 28802679 28802738 -72577783 + AT_rich Low_complexity Low_complexity 1 59 0 24 0 0 0 chr15 28803010 28803034 -72577487 + AT_rich Low_complexity Low_complexity 1 24 0 457 332 128 8 chr15 28803827 28804210 -72576311 - L1ME4a LINE L1 -125 5996 5568 1752 172 0 7 chr15 28804210 28804500 -72576021 + AluJo SINE Alu 1 288 -24 325 301 53 38 chr15 28805057 28805190 -72575331 + L3 LINE CR1 937 1071 -506 265 271 123 12 chr15 28805190 28805360 -72575161 + MER113 DNA MER1_type? 2 190 -331 303 259 168 76 chr15 28805395 28805496 -72575025 + MER113 DNA MER1_type? 307 397 -124 2182 109 0 0 chr15 28805496 28805790 -72574731 + AluSq SINE Alu 1 294 -19 303 259 168 76 chr15 28805790 28805885 -72574636 + MER113 DNA MER1_type? 397 521 0 21 0 0 0 chr15 28805886 28805907 -72574614 + AT_rich Low_complexity Low_complexity 1 21 0 489 369 47 4 chr15 28806009 28806288 -72574233 + L3 LINE CR1 1241 1531 -46 326 254 23 77 chr15 28806288 28806418 -72574103 - LTR67 LTR ERVL -1 556 434 1992 259 160 62 chr15 28808088 28809351 -72571170 - HAL1 LINE L1 -1 2506 1368 249 33 0 0 chr15 28809351 28809381 -72571140 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 1992 259 160 62 chr15 28809381 28810301 -72570220 - HAL1 LINE L1 -1139 1368 77 2396 173 20 34 chr15 28810959 28811398 -72569123 - Tigger2a DNA MER2_type -1 433 1 185 333 0 16 chr15 28817317 28817380 -72563141 + MIR SINE MIR 49 110 -152 207 237 51 0 chr15 28817592 28817651 -72562870 + MIR SINE MIR 54 115 -93 392 242 200 32 chr15 28817984 28818174 -72562347 - MIR SINE MIR -38 224 3 1998 201 14 14 chr15 28818539 28818953 -72561568 + L1MD3 LINE L1 7582 7995 0 236 242 68 45 chr15 28820986 28821118 -72559403 + L2 LINE L2 3097 3231 -82 2503 59 0 7 chr15 28825673 28825977 -72554544 - AluY SINE Alu -9 302 1 192 182 0 0 chr15 28826940 28826973 -72553548 + MIR SINE MIR 46 78 -184 271 290 40 10 chr15 28827066 28827166 -72553355 + MIR SINE MIR 122 224 -38 385 312 153 0 chr15 28828477 28828634 -72551887 + MIR SINE MIR 29 209 -53 2239 119 0 0 chr15 28828761 28829064 -72551457 - AluSc SINE Alu -6 303 1 4465 34 0 2 chr15 28829481 28829984 -72550537 - L1PA5 LINE L1 -3 6151 5650 601 43 0 0 chr15 28829985 28830055 -72550466 + L1PA5 LINE L1 5565 5634 -520 2185 199 52 36 chr15 28830119 28830616 -72549905 - MER74A LTR ERVL -2 556 52 388 198 55 11 chr15 28830743 28830834 -72549687 + MER88 LTR ERVL 79 173 -291 * 1416 273 83 30 chr15 28830755 28831227 -72549294 - MER74B LTR ERVL -74 548 52 634 237 142 5 chr15 28832759 28832978 -72547543 + MIR SINE MIR 3 251 -11 1373 160 3 85 chr15 28833016 28833309 -72547212 + AluJb SINE Alu 42 310 -2 684 265 114 5 chr15 28837297 28837516 -72543005 - MIR SINE MIR -2 260 18 913 247 11 0 chr15 28839073 28839247 -72541274 + MER5A DNA MER1_type 5 180 -9 752 272 12 6 chr15 28839262 28839431 -72541090 + MER5B DNA MER1_type 8 177 -1 886 173 31 97 chr15 28839445 28839734 -72540787 + L1MB7 LINE L1 5915 6184 0 331 141 70 0 chr15 28839771 28839842 -72540679 - L1MB7 LINE L1 0 6184 6109 1216 221 0 9 chr15 28839881 28840112 -72540409 - AluJb SINE Alu -83 229 1 1239 194 108 60 chr15 28840112 28840402 -72540119 - L1MB8 LINE L1 -63 6115 5790 219 69 0 0 chr15 28840402 28840431 -72540090 + (TG)n Simple_repeat Simple_repeat 2 30 0 1239 194 108 60 chr15 28840431 28840640 -72539881 - L1MB8 LINE L1 -388 5790 5592 1762 143 124 0 chr15 28840645 28841016 -72539505 - L1MB4 LINE L1 -1 6990 6574 5203 218 40 26 chr15 28841022 28842767 -72537754 - L1MB4 LINE L1 -562 6415 4656 1318 257 54 37 chr15 28842770 28843741 -72536780 - L1MB4 LINE L1 -3585 3372 2431 328 287 160 40 chr15 28843747 28843897 -72536624 - L1MB4 LINE L1 -5737 1118 951 264 257 49 121 chr15 28843919 28844040 -72536481 - L1MB4 LINE L1 -6595 264 136 288 0 0 0 chr15 28844040 28844072 -72536449 + (CA)n Simple_repeat Simple_repeat 2 33 0 2280 112 3 0 chr15 28844074 28844379 -72536142 + AluSp SINE Alu 1 306 -7 264 257 49 121 chr15 28844379 28844519 -72536002 - L1MB4 LINE L1 -6724 135 19 280 331 62 28 chr15 28845392 28845570 -72534951 - MIR3 SINE MIR -13 195 12 327 270 150 0 chr15 28845860 28845960 -72534561 - L2 LINE L2 -6 3266 3152 18377 129 14 4 chr15 28846183 28850160 -72530361 + L1PA10 LINE L1 2160 6168 0 23 54 0 0 chr15 28850877 28850914 -72529607 + AT_rich Low_complexity Low_complexity 1 37 0 324 250 0 40 chr15 28851812 28851888 -72528633 - MER5B DNA MER1_type -2 176 104 189 253 74 84 chr15 28851894 28851989 -72528532 + MER5B DNA MER1_type 29 122 -56 183 336 43 17 chr15 28853231 28853347 -72527174 + MIR3 SINE MIR 75 193 -15 593 264 137 13 chr15 28853901 28854128 -72526393 - MIR SINE MIR 0 262 8 775 236 62 0 chr15 28854435 28854613 -72525908 - MER5A DNA MER1_type 0 189 1 405 327 89 6 chr15 28854813 28854981 -72525540 + L2 LINE L2 3132 3313 0 1749 161 36 30 chr15 28855013 28855146 -72525375 + AluJo SINE Alu 1 132 -180 2396 100 0 3 chr15 28855146 28855456 -72525065 + AluSq SINE Alu 2 310 -3 1749 161 36 30 chr15 28855456 28855626 -72524895 + AluJo SINE Alu 132 306 -6 236 156 18 193 chr15 28858037 28858146 -72522375 + MIR3 SINE MIR 116 205 -3 268 288 0 25 chr15 28858874 28858954 -72521567 - MIR SINE MIR -99 163 86 510 314 38 51 chr15 28859456 28859692 -72520829 - MIR SINE MIR 0 262 30 4953 153 18 17 chr15 28859836 28861269 -72519252 - L1PB4 LINE L1 0 6156 4722 2451 120 58 23 chr15 28861269 28861702 -72518819 - LTR7 LTR ERV1 0 450 3 4953 153 18 17 chr15 28861702 28862050 -72518471 - L1PB4 LINE L1 -1434 4722 4376 438 299 114 78 chr15 28862562 28862833 -72517688 + L2 LINE L2 2992 3272 0 288 242 24 65 chr15 28863485 28863609 -72516912 - MLT1J2 LTR MaLR -3 447 329 265 207 0 198 chr15 28863695 28863811 -72516710 - MER5A DNA MER1_type -84 105 13 398 246 90 8 chr15 28863905 28864027 -72516494 - MLT1J2 LTR MaLR -315 135 4 1546 130 159 88 chr15 28864153 28864530 -72515991 - MER4A LTR ERV1 0 664 261 429 156 89 0 chr15 28864530 28864620 -72515901 - MER4A LTR ERV1 -566 98 1 14750 99 52 29 chr15 28864629 28867242 -72513279 - MER4A-int LTR ERV1 0 6598 3924 2436 112 87 26 chr15 28867260 28867788 -72512733 - MER4A-int LTR ERV1 -3302 3296 2737 310 214 0 14 chr15 28867788 28867858 -72512663 + LTR8 LTR ERV1 1 69 -622 1234 77 68 197 chr15 28867898 28868091 -72512430 - L1MA5A LINE L1 -2 6295 6093 400 108 31 0 chr15 28868091 28868156 -72512365 + MADE1 DNA Mariner 1 67 -13 1234 77 68 197 chr15 28868156 28868249 -72512272 - L1MA5A LINE L1 -204 6093 5990 890 161 92 0 chr15 28868249 28868423 -72512098 + LTR8 LTR ERV1 68 257 -434 3613 81 30 95 chr15 28868423 28868704 -72511817 - MER4A-int LTR ERV1 -4103 2495 2197 2185 77 17 30 chr15 28868704 28869002 -72511519 + AluSg SINE Alu 1 294 -16 3613 81 30 95 chr15 28869002 28869496 -72511025 - MER4A-int LTR ERV1 -4401 2197 1771 1145 86 74 149 chr15 28869494 28869810 -72510711 - MER4A-int LTR ERV1 -4266 1284 503 * 351 219 16 31 chr15 28869797 28869925 -72510596 - MER4A-int LTR ERV1 -5997 601 476 * 2555 81 70 42 chr15 28870082 28870309 -72510212 - MER4A-int LTR ERV1 -6156 442 223 2279 78 0 7 chr15 28870309 28870603 -72509918 + AluY SINE Alu 1 292 -19 2555 81 70 42 chr15 28870603 28870805 -72509716 - MER4A-int LTR ERV1 -6375 223 1 1495 144 25 76 chr15 28870808 28871170 -72509351 - MER4A LTR ERV1 0 664 263 492 122 89 0 chr15 28871170 28871260 -72509261 - MER4A LTR ERV1 -566 98 1 184 379 0 0 chr15 28872606 28872672 -72507849 - MIR SINE MIR -190 72 7 1164 71 137 11 chr15 28873383 28873566 -72506955 - MER4A-int LTR ERV1 -6392 206 1 1496 144 25 76 chr15 28873569 28873931 -72506590 - MER4A LTR ERV1 0 664 263 492 122 89 0 chr15 28873931 28874021 -72506500 - MER4A LTR ERV1 -566 98 1 202 298 18 0 chr15 28876375 28876432 -72504089 + L2 LINE L2 2724 2781 -533 289 178 297 10 chr15 28876820 28876921 -72503600 - MER5A DNA MER1_type -5 184 55 683 222 143 25 chr15 28877056 28877335 -72503186 - MLT1D LTR MaLR -193 312 1 214 391 0 0 chr15 28877335 28877427 -72503094 + L2 LINE L2 2575 2666 -648 206 143 0 71 chr15 28877536 28877578 -72502943 - L2 LINE L2 -11 3302 3264 * 787 262 17 42 chr15 28877551 28877788 -72502733 - MIR SINE MIR -17 245 15 494 340 72 8 chr15 28877864 28878099 -72502422 + MIR SINE MIR 5 254 -8 927 107 0 8 chr15 28878195 28878326 -72502195 - AluY SINE Alu -25 286 157 905 249 70 0 chr15 28880236 28880477 -72500044 - MIR SINE MIR -3 259 2 323 281 169 17 chr15 28880539 28880717 -72499804 - MIR SINE MIR -52 210 6 672 149 0 0 chr15 28881702 28881809 -72498712 + AluJb SINE Alu 1 107 -205 1820 147 11 0 chr15 28881810 28882076 -72498445 + AluSx SINE Alu 22 290 -22 296 273 55 27 chr15 28883362 28883472 -72497049 + MIR SINE MIR 52 164 -98 2321 119 3 0 chr15 28886013 28886324 -72494197 - AluSx SINE Alu 0 312 1 1464 176 35 4 chr15 28888820 28889075 -72491446 - AluJo SINE Alu 0 312 50 323 273 95 11 chr15 28889783 28889941 -72490580 - MIR SINE MIR -62 146 11 257 338 78 0 chr15 28892036 28892178 -72488343 + L2 LINE L2 3117 3269 -3 2115 147 35 0 chr15 28892310 28892658 -72487863 - MER46B DNA MER2_type -1 235 1 1952 159 0 0 chr15 28893008 28893297 -72487224 - AluSx SINE Alu -9 303 15 2404 79 7 0 chr15 28893707 28894010 -72486511 - AluSp SINE Alu -8 305 1 534 271 132 16 chr15 28894980 28895283 -72485238 - L1ME4a LINE L1 -9 6112 5775 921 228 47 67 chr15 28895402 28895744 -72484777 + MER46C DNA MER2_type 4 338 0 2381 69 7 0 chr15 28898008 28898297 -72482224 + AluY SINE Alu 1 291 -20 22 0 0 0 chr15 28898561 28898583 -72481938 + AT_rich Low_complexity Low_complexity 1 22 0 509 285 225 26 chr15 28902232 28902832 -72477689 + L2 LINE L2 2574 3308 -5 1827 128 207 11 chr15 28905173 28905531 -72474990 - MSTA LTR MaLR 0 428 1 416 226 185 46 chr15 28905674 28905936 -72474585 - MER34 LTR ERV1 0 739 333 292 214 88 34 chr15 28906039 28906171 -72474350 - MER34C LTR ERV1 -415 128 1 6199 111 90 7 chr15 28906363 28907286 -72473235 + THE1-int LTR MaLR 121 1120 -460 539 268 81 51 chr15 28907286 28907521 -72473000 - Charlie8 DNA MER1_type -2175 242 1 226 318 56 56 chr15 28907541 28907667 -72472854 - L2 LINE L2 -176 3096 2971 239 342 154 23 chr15 28907902 28908344 -72472177 - L2 LINE L2 -590 2724 2225 1064 227 18 0 chr15 28910391 28910611 -72469910 + MER58A DNA MER1_type 1 224 0 2283 107 3 7 chr15 28913549 28913857 -72466664 - AluSx SINE Alu -5 307 1 536 306 40 0 chr15 28914717 28914890 -72465631 + MIR SINE MIR 13 192 -70 211 294 11 54 chr15 28916780 28916872 -72463649 + MIR3 SINE MIR 105 192 -16 1859 23 0 0 chr15 28917309 28917523 -72462998 - L1PA4 LINE L1 -1 6154 5941 541 192 0 31 chr15 28918125 28918255 -72462266 - L1MA9 LINE L1 -30 6282 6157 1012 144 0 0 chr15 28919245 28919391 -72461130 + FRAM SINE Alu 1 146 -30 29 0 0 0 chr15 28919398 28919427 -72461094 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr15 28922368 28922389 -72458132 + (A)n Simple_repeat Simple_repeat 1 21 0 316 293 0 12 chr15 28922606 28922688 -72457833 - MIR SINE MIR -144 118 38 2439 83 0 0 chr15 28924476 28924777 -72455744 + AluSc SINE Alu 1 301 -8 605 246 163 5 chr15 28924779 28924982 -72455539 + MIR SINE MIR 23 257 -5 1088 198 12 63 chr15 28924982 28925234 -72455287 + MER8 DNA MER2_type 1 239 0 230 321 80 9 chr15 28925845 28925957 -72454564 - MIR3 SINE MIR -7 201 82 180 250 48 36 chr15 28927492 28927576 -72452945 - L2 LINE L2 0 3313 3229 2240 95 3 7 chr15 28927718 28928012 -72452509 + AluSc SINE Alu 1 293 -16 385 248 87 27 chr15 28928147 28928296 -72452225 - MER103 DNA DNA -6 160 3 1732 183 17 7 chr15 28928560 28928855 -72451666 + AluJb SINE Alu 1 298 -14 217 204 0 0 chr15 28929021 28929065 -72451456 - L2 LINE L2 -553 2761 2718 26 0 0 0 chr15 28929748 28929774 -72450747 + AT_rich Low_complexity Low_complexity 1 26 0 333 298 35 0 chr15 28930660 28930774 -72449747 + L2 LINE L2 3184 3301 -12 1708 180 153 54 chr15 28930817 28931333 -72449188 - MLT1E2 LTR MaLR -8 618 52 1635 259 64 23 chr15 28932351 28932837 -72447684 - MLT1E LTR MaLR 0 593 88 188 204 74 0 chr15 28934537 28934591 -72445930 + L2 LINE L2 2905 2962 -351 373 277 84 25 chr15 28934742 28934944 -72445577 + MIR SINE MIR 46 259 -3 1397 119 0 89 chr15 28935409 28935645 -72444876 - MER1B DNA MER1_type 0 339 125 197 241 48 24 chr15 28936953 28937036 -72443485 + MIR SINE MIR 178 262 0 203 189 0 0 chr15 28938479 28938516 -72442005 + (TA)n Simple_repeat Simple_repeat 2 38 0 277 104 0 0 chr15 28938516 28938564 -72441957 + LTR66 LTR ERVL 394 441 -169 276 350 8 0 chr15 28938574 28938691 -72441830 + MIR SINE MIR 134 251 -11 364 307 123 0 chr15 28939156 28939335 -72441186 + MIR SINE MIR 49 249 -13 766 188 34 74 chr15 28939870 28939946 -72440575 - MER5A DNA MER1_type 0 189 112 1892 161 0 3 chr15 28939946 28940237 -72440284 - AluSg SINE Alu -20 290 1 766 188 34 74 chr15 28940237 28940336 -72440185 - MER5A DNA MER1_type -77 112 21 1824 204 70 31 chr15 28941221 28941710 -72438811 + Charlie4a DNA MER1_type 1 508 0 2204 118 0 3 chr15 28941715 28942012 -72438509 + AluSg SINE Alu 1 296 -14 1391 50 0 96 chr15 28942050 28942278 -72438243 + AluY SINE Alu 101 309 0 507 323 71 28 chr15 28942397 28942892 -72437629 + L1ME4a LINE L1 5305 5820 -301 413 179 163 0 chr15 28943003 28943126 -72437395 + L1ME4a LINE L1 5976 6118 -3 320 123 14 0 chr15 28944079 28944152 -72436369 + (TG)n Simple_repeat Simple_repeat 2 75 0 180 111 0 0 chr15 28944675 28944702 -72435819 + (GGA)n Simple_repeat Simple_repeat 1 27 0 283 260 104 0 chr15 28945642 28945738 -72434783 - MIR SINE MIR -108 154 49 289 342 43 35 chr15 28945891 28946122 -72434399 - MIR SINE MIR -10 252 20 2067 130 135 23 chr15 28947126 28947511 -72433010 + MSTA LTR MaLR 1 428 0 302 191 191 9 chr15 28948539 28948644 -72431877 - MIR SINE MIR -62 146 23 197 349 0 0 chr15 28948690 28948753 -72431768 - MIR SINE MIR -108 154 92 477 262 8 16 chr15 28948953 28949079 -72431442 + MIR SINE MIR 39 163 -99 812 139 151 23 chr15 28950208 28950380 -72430141 - MLT1D LTR MaLR -4 501 308 532 146 48 68 chr15 28950380 28950483 -72430038 - MLT1D LTR MaLR -403 102 2 2528 64 0 0 chr15 28951935 28952232 -72428289 - AluY SINE Alu -14 297 1 5750 148 32 28 chr15 28952455 28953472 -72427049 + L1PA6 LINE L1 11 1032 -5114 * 29198 64 12 19 chr15 28953466 28957230 -72423291 + L1PA6 LINE L1 1565 5293 -861 2551 53 3 3 chr15 28957230 28957530 -72422991 + AluY SINE Alu 1 300 -11 29198 64 12 19 chr15 28957530 28958384 -72422137 + L1PA6 LINE L1 5293 6151 -3 252 204 0 0 chr15 28958421 28958475 -72422046 - MER4-int LTR ERV1 -5433 1165 1112 5379 189 105 14 chr15 28959718 28961039 -72419482 - Charlie1a DNA MER1_type -2 1453 12 2427 64 7 0 chr15 28963252 28963550 -72416971 - AluY SINE Alu -11 300 1 1549 179 7 37 chr15 28964799 28965095 -72415426 - AluJo SINE Alu -19 293 7 202 373 9 18 chr15 28965991 28966101 -72414420 - MIR3 SINE MIR -11 197 89 198 0 0 0 chr15 28968221 28968243 -72412278 + (TCTG)n Simple_repeat Simple_repeat 1 22 0 660 119 34 17 chr15 28968243 28968419 -72412102 + CT-rich Low_complexity Low_complexity 2 180 0 417 332 81 9 chr15 28971013 28971224 -72409297 - MIR SINE MIR -32 230 5 382 306 202 31 chr15 28971251 28971895 -72408626 - L2 LINE L2 -559 2755 2002 185 244 0 0 chr15 28972198 28972243 -72408278 - L2 LINE L2 -4 3309 3265 1816 158 68 50 chr15 28972309 28972690 -72407831 - MLT1B LTR MaLR -2 388 1 2203 103 0 39 chr15 28973004 28973315 -72407206 + AluSx SINE Alu 11 309 -3 222 171 0 0 chr15 28974062 28974103 -72406418 + (CA)n Simple_repeat Simple_repeat 2 42 0 330 26 0 0 chr15 28974103 28974142 -72406379 + (TC)n Simple_repeat Simple_repeat 1 39 0 288 146 0 0 chr15 28974382 28974430 -72406091 - L2 LINE L2 -4 3309 3262 21 0 0 0 chr15 28975141 28975162 -72405359 + AT_rich Low_complexity Low_complexity 1 21 0 2270 155 16 25 chr15 28975218 28975897 -72404624 - L1MB3 LINE L1 -4 6179 5450 183 80 0 0 chr15 28976430 28976455 -72404066 + (TGGA)n Simple_repeat Simple_repeat 1 25 0 1826 162 223 39 chr15 28977682 28978145 -72402376 - LTR10A LTR ERV1 -61 548 1 265 359 0 76 chr15 28978175 28978373 -72402148 - L2 LINE L2 -91 3181 2999 1630 184 114 11 chr15 28978453 28978812 -72401709 + MSTD LTR MaLR 1 396 0 1485 151 0 37 chr15 28979099 28979344 -72401177 - MSTB LTR MaLR 0 426 191 1080 131 0 0 chr15 28979346 28979499 -72401022 - AluJb SINE Alu -8 304 152 6293 167 40 23 chr15 28979499 28980242 -72400279 - MSTA-int LTR MaLR -502 1149 379 2617 68 0 0 chr15 28980242 28980549 -72399972 - AluY SINE Alu -4 307 1 6293 167 40 23 chr15 28980549 28980935 -72399586 - MSTA-int LTR MaLR -1272 379 1 2301 170 70 0 chr15 28980936 28981335 -72399186 - MSTA LTR MaLR -1 427 1 578 269 39 14 chr15 28981747 28981945 -72398576 + MIR SINE MIR 18 219 -43 210 160 69 30 chr15 28982197 28982328 -72398193 + (ATGGTG)n Simple_repeat Simple_repeat 1 136 0 221 180 15 45 chr15 28982402 28982540 -72397981 + (ATGGTG)n Simple_repeat Simple_repeat 1 133 0 864 240 47 35 chr15 28982542 28982645 -72397876 - MIR SINE MIR -1 261 161 2369 123 19 25 chr15 28982645 28983010 -72397511 - MLT1A1 LTR MaLR -2 363 1 864 240 47 35 chr15 28983010 28983164 -72397357 - MIR SINE MIR -101 161 1 1440 174 15 120 chr15 28984564 28984905 -72395616 - MLT1A1 LTR MaLR 0 365 72 2090 154 95 3 chr15 28984905 28985295 -72395226 + MSTB LTR MaLR 1 426 0 1440 174 15 120 chr15 28985295 28985361 -72395160 - MLT1A1 LTR MaLR -293 72 1 1122 314 24 22 chr15 28986169 28986627 -72393894 + L2 LINE L2 2195 2653 -661 343 343 7 29 chr15 28987351 28987491 -72393030 - L2 LINE L2 0 3272 3136 21 0 0 0 chr15 28988542 28988563 -72391958 + AT_rich Low_complexity Low_complexity 1 21 0 1939 136 0 40 chr15 28989592 28989893 -72390628 + AluJb SINE Alu 5 293 -19 2444 220 69 6 chr15 28989964 28990483 -72390038 + MLT1F1 LTR MaLR 8 559 -8 631 108 10 39 chr15 28991498 28991600 -72388921 + HY3 scRNA scRNA 1 99 -2 207 0 0 0 chr15 28992360 28992383 -72388138 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 306 280 160 40 chr15 28992608 28992758 -72387763 - MIR3 SINE MIR -19 189 22 450 53 0 0 chr15 28994159 28994216 -72386305 + (CA)n Simple_repeat Simple_repeat 2 58 0 2363 72 0 56 chr15 28994682 28995002 -72385519 + AluY SINE Alu 1 302 -9 1160 189 62 8 chr15 28995697 28995941 -72384580 + MER63 DNA MER1_type 641 897 -163 2053 228 86 4 chr15 28996976 28997512 -72383009 + MER63 DNA MER1_type 481 1060 0 1349 163 40 0 chr15 28997514 28997741 -72382780 - MER46A DNA MER2_type 0 236 1 753 178 51 51 chr15 28998283 28998440 -72382081 - MER20 DNA MER1_type -55 164 8 23 86 0 0 chr15 28999075 28999133 -72381388 + AT_rich Low_complexity Low_complexity 1 58 0 23 33 0 0 chr15 28999183 28999213 -72381308 + AT_rich Low_complexity Low_complexity 1 30 0 2473 59 0 23 chr15 29001106 29001409 -72379112 + AluY SINE Alu 1 296 -15 591 274 22 28 chr15 29001662 29001841 -72378680 + MER5B DNA MER1_type 1 178 0 5692 127 24 3 chr15 29002041 29002925 -72377596 + L1MC1 LINE L1 5432 6333 0 2298 112 0 3 chr15 29003685 29003997 -72376524 - AluSx SINE Alu -1 311 1 2151 119 0 49 chr15 29005737 29006065 -72374456 - AluSx SINE Alu 0 312 1 794 234 0 18 chr15 29006095 29006266 -72374255 - AluJb SINE Alu -8 304 137 366 314 58 5 chr15 29007656 29007844 -72372677 - MIR SINE MIR 0 262 65 2349 77 0 3 chr15 29010605 29010920 -72369601 - AluY SINE Alu 0 314 1 855 280 0 4 chr15 29012328 29012553 -72367968 - MER58A DNA MER1_type 0 224 1 373 288 70 101 chr15 29012729 29013045 -72367476 + L2 LINE L2 2577 2882 -432 216 186 43 161 chr15 29013248 29013409 -72367112 + L2 LINE L2 3078 3219 -94 519 288 85 54 chr15 29013579 29014085 -72366436 - L2 LINE L2 -195 3077 2560 192 40 0 0 chr15 29014088 29014113 -72366408 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 237 313 210 9 chr15 29014242 29014475 -72366046 - L2 LINE L2 -976 2338 2059 255 274 0 60 chr15 29014511 29014595 -72365926 + L2 LINE L2 3188 3266 -6 1931 160 0 7 chr15 29015020 29015308 -72365213 - AluSx SINE Alu -26 286 1 21 0 0 0 chr15 29015393 29015414 -72365107 + AT_rich Low_complexity Low_complexity 1 21 0 267 111 0 0 chr15 29015572 29015617 -72364904 - AluSp/q SINE Alu -1 302 258 2147 134 0 3 chr15 29015617 29015922 -72364599 - AluSx SINE Alu -8 304 1 1986 166 33 0 chr15 29016986 29017317 -72363204 + MER2 DNA MER2_type 2 343 -1 11142 76 4 24 chr15 29018926 29021267 -72359254 - L1PA7 LINE L1 -3 6151 3851 1678 99 5 5 chr15 29022132 29022353 -72358168 + AluSg/x SINE Alu 70 290 -19 758 251 138 10 chr15 29022353 29022793 -72357728 + L2 LINE L2 2534 3074 -239 205 219 0 0 chr15 29022794 29022835 -72357686 + L2 LINE L2 2503 2543 -771 536 241 62 0 chr15 29024247 29024409 -72356112 + L1ME LINE L1 5177 5348 -798 796 161 0 29 chr15 29024466 29024603 -72355918 - FLAM_C SINE Alu 0 133 1 1169 229 172 3 chr15 29024625 29024979 -72355542 + L1ME LINE L1 5386 5799 -371 2410 76 0 3 chr15 29025410 29025714 -72354807 - AluY SINE Alu -8 303 1 2282 112 0 0 chr15 29026983 29027278 -72353243 - AluSx SINE Alu -17 295 1 665 105 0 129 chr15 29027499 29027623 -72352898 + FRAM SINE Alu 57 164 -12 430 268 21 21 chr15 29028265 29028407 -72352114 - MLT1J LTR MaLR -369 142 1 31913 105 16 59 chr15 29029187 29034958 -72345563 + L1PA7 LINE L1 1 5453 -701 2240 111 0 7 chr15 29034958 29035264 -72345257 + AluSg SINE Alu 1 304 -6 31913 105 16 59 chr15 29035264 29035937 -72344584 + L1PA7 LINE L1 5453 6154 0 2291 114 3 0 chr15 29036099 29036398 -72344123 + AluSg SINE Alu 1 300 -10 2523 84 0 0 chr15 29036698 29037008 -72343513 + AluSx SINE Alu 1 310 -2 215 300 0 0 chr15 29037240 29037310 -72343211 - MIR SINE MIR -108 154 85 2245 121 0 6 chr15 29037346 29037660 -72342861 + AluSx SINE Alu 1 312 0 180 310 11 46 chr15 29038523 29038610 -72341911 - MIR SINE MIR -123 139 56 2025 124 18 0 chr15 29041019 29041302 -72339219 + AluJb SINE Alu 1 288 -24 386 185 0 0 chr15 29041421 29041486 -72339035 + FLAM_A SINE Alu 69 133 0 232 27 54 0 chr15 29041706 29041743 -72338778 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1547 167 65 4 chr15 29041817 29042093 -72338428 + AluJb SINE Alu 1 293 -19 229 286 143 29 chr15 29042125 29042265 -72338256 + L3 LINE CR1 341 496 -1081 2315 89 0 0 chr15 29042601 29042892 -72337629 + AluSc SINE Alu 1 291 -18 222 37 0 0 chr15 29043641 29043668 -72336853 + (GAA)n Simple_repeat Simple_repeat 2 28 0 604 234 8 0 chr15 29047172 29047296 -72333225 + FRAM SINE Alu 34 158 -18 2252 95 0 0 chr15 29047984 29048294 -72332227 + AluSx SINE Alu 1 310 0 329 173 0 0 chr15 29049311 29049392 -72331129 - AluS SINE Alu 0 310 230 2346 63 0 30 chr15 29049817 29050119 -72330402 + AluY SINE Alu 1 293 -18 193 333 27 41 chr15 29050548 29050695 -72329826 + MIR3 SINE MIR 36 180 -28 1114 192 28 0 chr15 29050986 29051200 -72329321 + MER58A DNA MER1_type 4 223 -1 906 226 27 21 chr15 29053209 29053395 -72327126 - MER5A DNA MER1_type -2 187 1 200 29 0 59 chr15 29057617 29057651 -72322870 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 844 256 135 27 chr15 29058869 29059501 -72321020 - L2 LINE L2 -4 3309 2600 725 173 119 55 chr15 29059510 29059712 -72320809 + L1MB5 LINE L1 5947 6161 -13 315 0 0 0 chr15 29059723 29059758 -72320763 + (TA)n Simple_repeat Simple_repeat 1 35 0 2129 109 3 31 chr15 29059761 29060082 -72320439 - AluSx SINE Alu 0 312 1 2490 71 3 10 chr15 29060082 29060391 -72320130 - AluY SINE Alu -4 307 1 279 0 0 0 chr15 29060393 29060424 -72320097 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4816 250 123 25 chr15 29060431 29061460 -72319061 - L2 LINE L2 -713 2601 1674 198 0 0 0 chr15 29061460 29061482 -72319039 + (CA)n Simple_repeat Simple_repeat 2 23 0 4816 250 123 25 chr15 29061482 29062289 -72318232 - L2 LINE L2 -1640 1674 586 2113 235 73 93 chr15 29062921 29063724 -72316797 - MER21B LTR ERV1 -64 799 13 741 131 31 0 chr15 29064023 29064343 -72316178 + (TA)n Simple_repeat Simple_repeat 1 330 0 204 347 0 0 chr15 29064870 29064945 -72315576 - L3 LINE CR1 -4 1573 1499 362 331 68 37 chr15 29065081 29065377 -72315144 - L3 LINE CR1 -234 1343 1039 2214 116 3 25 chr15 29065439 29065757 -72314764 - AluSx SINE Alu -1 311 1 1130 68 0 0 chr15 29065761 29065894 -72314627 - AluSq/x SINE Alu -179 133 1 2392 94 3 0 chr15 29066188 29066497 -72314024 - AluSx SINE Alu -2 310 1 558 184 10 0 chr15 29066633 29066731 -72313790 - L1PB4 LINE L1 -5 6151 6053 2830 154 30 20 chr15 29066731 29067232 -72313289 + L1PB4 LINE L1 5560 6065 -91 918 256 61 104 chr15 29067991 29068148 -72312373 - MLT1J LTR MaLR -6 505 343 2219 114 0 13 chr15 29068148 29068455 -72312066 - AluSx SINE Alu -9 303 1 918 256 61 104 chr15 29068455 29068825 -72311696 - MLT1J LTR MaLR -168 343 1 3260 191 60 76 chr15 29069157 29069976 -72310545 + MER21B LTR ERV1 1 806 -57 5160 151 19 22 chr15 29070983 29071889 -72308632 - MER4D LTR ERV1 0 903 1 2146 114 7 7 chr15 29073581 29073879 -72306642 - AluSx SINE Alu -14 298 1 184 307 102 0 chr15 29074507 29074595 -72305926 + MIR3 SINE MIR 89 185 -23 2621 59 0 0 chr15 29075534 29075841 -72304680 - AluY SINE Alu -4 307 1 188 195 24 37 chr15 29075953 29076035 -72304486 + CT-rich Low_complexity Low_complexity 3 83 0 742 160 24 0 chr15 29076442 29076567 -72303954 + FLAM_C SINE Alu 5 132 -1 1833 154 17 7 chr15 29076812 29077111 -72303410 - AluJo SINE Alu -6 306 5 245 221 44 44 chr15 29078311 29078379 -72302142 + MIR SINE MIR 73 140 -122 1062 123 0 59 chr15 29079680 29079867 -72300654 - AluSg/x SINE Alu 0 312 137 27 0 0 0 chr15 29081255 29081282 -72299239 + AT_rich Low_complexity Low_complexity 1 27 0 2440 63 0 20 chr15 29081291 29081592 -72298929 + AluY SINE Alu 1 295 -16 264 30 0 0 chr15 29081617 29081650 -72298871 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 286 318 0 0 chr15 29081776 29081864 -72298657 + L3b LINE CR1 1375 1462 -121 497 288 51 68 chr15 29082304 29082835 -72297686 + L1MEd LINE L1 657 1178 -4941 2298 102 7 13 chr15 29084687 29084990 -72295531 + AluSx SINE Alu 2 302 -10 1224 116 0 0 chr15 29084992 29085156 -72295365 + AluSg/x SINE Alu 136 299 -13 267 286 17 17 chr15 29087682 29087801 -72292720 + CT-rich Low_complexity Low_complexity 1 119 0 2255 89 3 0 chr15 29088912 29089204 -72291317 + AluSq SINE Alu 1 293 -20 2188 108 3 7 chr15 29089460 29089793 -72290728 + AluSq SINE Alu 1 332 0 216 97 0 0 chr15 29092073 29092104 -72288417 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 367 286 18 9 chr15 29092105 29092217 -72288304 - L2 LINE L2 -12 3301 3189 24 32 0 0 chr15 29092611 29092642 -72287879 + AT_rich Low_complexity Low_complexity 1 31 0 2189 116 0 6 chr15 29095794 29096105 -72284416 - AluSq SINE Alu -4 309 1 440 256 74 0 chr15 29097852 29097973 -72282548 + MIR SINE MIR 58 187 -75 15220 126 31 11 chr15 29097984 29099538 -72280983 + Tigger1 DNA MER2_type 1 1621 -797 2440 63 3 16 chr15 29099538 29099841 -72280680 + AluY SINE Alu 1 299 -12 15220 126 31 11 chr15 29099841 29100646 -72279875 + Tigger1 DNA MER2_type 1621 2408 -10 189 346 29 19 chr15 29101959 29102063 -72278458 - L2 LINE L2 -50 3222 3118 2100 128 3 3 chr15 29102083 29102388 -72278133 + AluSx SINE Alu 1 305 -7 2328 87 0 7 chr15 29102444 29102744 -72277777 + AluSx SINE Alu 1 298 -14 2200 101 27 13 chr15 29102795 29103093 -72277428 + AluSq SINE Alu 1 302 -11 1875 168 0 7 chr15 29104072 29104358 -72276163 + AluSx SINE Alu 1 284 -28 351 0 0 0 chr15 29104358 29104397 -72276124 + (CA)n Simple_repeat Simple_repeat 2 40 0 304 221 13 13 chr15 29105521 29105598 -72274923 + CT-rich Low_complexity Low_complexity 6 82 0 472 282 13 13 chr15 29105944 29106093 -72274428 + MIR3 SINE MIR 58 206 -2 313 215 43 21 chr15 29106178 29106271 -72274250 - L1M4 LINE L1 -2947 3199 3105 325 250 27 36 chr15 29109820 29109932 -72270589 - L2 LINE L2 0 3272 3162 249 276 0 0 chr15 29110072 29110130 -72270391 + L2 LINE L2 3225 3282 -31 360 308 171 31 chr15 29110144 29110610 -72269911 - L2 LINE L2 -32 3281 2755 2180 132 3 0 chr15 29111142 29111452 -72269069 + AluJb SINE Alu 1 311 -1 191 309 32 11 chr15 29111683 29111777 -72268744 - MIR SINE MIR -16 246 151 2497 66 0 3 chr15 29113244 29113547 -72266974 + AluY SINE Alu 1 302 -9 209 289 0 0 chr15 29114024 29114069 -72266452 - L2 LINE L2 -14 3258 3214 270 347 110 23 chr15 29114485 29114658 -72265863 - L2 LINE L2 -955 2359 2172 303 277 128 14 chr15 29115381 29115453 -72265068 + MER5A DNA MER1_type 19 81 -108 2218 114 3 3 chr15 29115453 29115760 -72264761 - AluSq SINE Alu -6 307 1 303 277 128 14 chr15 29115760 29115835 -72264686 + MER5A DNA MER1_type 81 183 -6 1141 224 91 100 chr15 29116034 29116610 -72263911 - MLT1H1 LTR MaLR -2 553 5 312 270 305 6 chr15 29116908 29117082 -72263439 + MIR SINE MIR 19 244 -18 2620 58 0 3 chr15 29119033 29119342 -72261179 - AluY SINE Alu -3 308 1 428 273 111 6 chr15 29119490 29119704 -72260817 + MIR SINE MIR 2 241 -21 2325 91 0 10 chr15 29120305 29120603 -72259918 + AluSg SINE Alu 1 295 -15 311 259 118 0 chr15 29120604 29120739 -72259782 + L1ME3A LINE L1 5626 5776 -345 1026 244 167 26 chr15 29121168 29121659 -72258862 - L1ME3A LINE L1 -223 5947 5388 21 36 0 0 chr15 29122214 29122242 -72258279 + AT_rich Low_complexity Low_complexity 1 28 0 2232 110 0 13 chr15 29124118 29124417 -72256104 + AluSg SINE Alu 1 295 -15 2300 80 0 20 chr15 29125411 29125710 -72254811 - AluSx SINE Alu -19 293 1 436 258 50 3 chr15 29126243 29126404 -72254117 - MIR SINE MIR -63 145 19 2225 75 4 7 chr15 29126857 29127165 -72253356 - AluSg SINE Alu 0 307 1 1424 181 19 98 chr15 29127338 29127758 -72252763 - MLT1B LTR MaLR -3 387 1 2238 101 3 10 chr15 29128417 29128714 -72251807 - AluSp SINE Alu -18 295 1 968 276 158 27 chr15 29131465 29131947 -72248574 + L2 LINE L2 1402 1946 -1368 706 94 21 0 chr15 29132034 29132130 -72248391 - AluS SINE Alu -214 99 2 300 213 16 0 chr15 29132135 29132196 -72248325 + L2 LINE L2 3237 3298 -15 1400 163 43 25 chr15 29132439 29132715 -72247806 - AluJb SINE Alu -31 281 1 2032 120 20 20 chr15 29132824 29133125 -72247396 - AluSx SINE Alu -11 301 1 2183 93 52 0 chr15 29138448 29138566 -72241955 + AluY SINE Alu 1 111 -200 269 26 26 0 chr15 29138566 29138604 -72241917 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2183 93 52 0 chr15 29138604 29138775 -72241746 + AluY SINE Alu 111 305 -6 517 236 224 24 chr15 29138869 29139115 -72241406 + L1ME3A LINE L1 5876 6170 0 366 200 70 61 chr15 29139365 29139480 -72241041 - MER5B DNA MER1_type -62 116 1 525 294 289 7 chr15 29140059 29140471 -72240050 + L2 LINE L2 2115 2642 -672 436 341 29 65 chr15 29140620 29140866 -72239655 + L2 LINE L2 3000 3236 -36 23 33 0 0 chr15 29141238 29141268 -72239253 + AT_rich Low_complexity Low_complexity 1 30 0 2150 119 0 3 chr15 29141491 29141786 -72238735 + AluSq SINE Alu 1 294 -19 241 154 91 118 chr15 29142692 29142802 -72237719 + MER5A DNA MER1_type 48 154 -35 2477 77 7 0 chr15 29143296 29143606 -72236915 - AluSx SINE Alu 0 312 1 327 146 66 13 chr15 29143670 29143821 -72236700 + (TA)n Simple_repeat Simple_repeat 2 160 0 212 363 112 24 chr15 29143918 29144249 -72236272 + L2 LINE L2 2316 2675 -639 443 267 87 6 chr15 29144348 29144509 -72236012 - MIR SINE MIR -12 250 77 180 245 0 138 chr15 29144813 29144907 -72235614 - L2 LINE L2 -1 3312 3232 2299 102 0 0 chr15 29146496 29146790 -72233731 + AluSx SINE Alu 1 294 -18 1076 96 0 0 chr15 29147739 29147875 -72232646 + AluSq/x SINE Alu 1 136 -176 2115 114 0 0 chr15 29147875 29148181 -72232340 + AluSg SINE Alu 1 306 0 371 279 163 54 chr15 29148304 29148784 -72231737 + L1M4 LINE L1 4533 5064 -1082 4229 28 0 4 chr15 29149275 29149774 -72230747 + L1PA3 LINE L1 5659 6155 0 830 273 60 36 chr15 29149774 29150299 -72230222 + L1M4c LINE L1 1559 2246 -4317 1770 178 16 3 chr15 29151287 29151591 -72228930 - AluJo SINE Alu -4 308 1 638 202 0 0 chr15 29151601 29151715 -72228806 - AluJb SINE Alu -14 298 185 1667 164 3 50 chr15 29152789 29153112 -72227409 + AluJo SINE Alu 1 308 -4 349 271 126 33 chr15 29154061 29154212 -72226309 - MIR3 SINE MIR -11 197 33 475 161 0 58 chr15 29154270 29154357 -72226164 - FLAM_A SINE Alu -59 83 2 517 255 83 108 chr15 29156272 29156355 -72224166 - MLT1J LTR MaLR -7 504 420 2271 124 10 41 chr15 29156355 29156515 -72224006 + THE1C LTR MaLR 1 164 -211 1910 97 0 12 chr15 29156515 29156772 -72223749 - AluSc SINE Alu -19 290 37 2271 124 10 41 chr15 29156772 29156998 -72223523 + THE1C LTR MaLR 164 375 0 517 255 83 108 chr15 29156998 29157431 -72223090 - MLT1J LTR MaLR -91 420 1 291 344 129 60 chr15 29158351 29158784 -72221737 - L2 LINE L2 -2 3270 2808 24 0 0 0 chr15 29158876 29158900 -72221621 + AT_rich Low_complexity Low_complexity 1 24 0 1679 93 138 4 chr15 29158974 29159221 -72221300 - AluSc SINE Alu -19 280 1 26 0 0 0 chr15 29159275 29159301 -72221220 + AT_rich Low_complexity Low_complexity 1 26 0 245 300 50 0 chr15 29160509 29160569 -72219952 + L2 LINE L2 3193 3255 -17 1504 193 39 3 chr15 29161035 29161320 -72219201 + AluJb SINE Alu 1 295 -17 10621 52 11 2 chr15 29161441 29163556 -72216965 - L1PA6 LINE L1 -4 6150 4021 533 188 111 0 chr15 29163628 29163745 -72216776 + FRAM SINE Alu 1 126 -50 2203 128 0 0 chr15 29164156 29164454 -72216067 - AluSx SINE Alu -14 298 1 21 0 0 0 chr15 29164718 29164739 -72215782 + AT_rich Low_complexity Low_complexity 1 21 0 1781 128 43 7 chr15 29164743 29165059 -72215462 + AluY SINE Alu 1 326 0 1859 167 7 7 chr15 29165528 29165828 -72214693 - AluJo SINE Alu -12 300 1 189 317 5 156 chr15 29165829 29166028 -72214493 + L2 LINE L2 2588 2756 -558 264 200 77 0 chr15 29166049 29166114 -72214407 + L1MEc LINE L1 27 96 -6300 1876 112 22 25 chr15 29166299 29166613 -72213908 - THE1C LTR MaLR -62 313 1 1457 75 28 0 chr15 29166613 29166826 -72213695 + L1PB1 LINE L1 5562 5780 -371 216 0 0 0 chr15 29166826 29166850 -72213671 + (TG)n Simple_repeat Simple_repeat 2 25 0 365 269 5 10 chr15 29166887 29167101 -72213420 + (CATATA)n Simple_repeat Simple_repeat 1 212 0 2419 82 79 0 chr15 29167101 29167443 -72213078 + L1PB1 LINE L1 5782 6150 -1 389 148 170 30 chr15 29167459 29167594 -72212927 + Charlie5 DNA MER1_type 2407 2560 -52 1921 108 68 20 chr15 29167935 29168230 -72212291 - AluSx SINE Alu -3 309 1 2108 99 0 7 chr15 29168393 29168677 -72211844 - AluSg SINE Alu -9 301 20 430 297 58 14 chr15 29168884 29169022 -72211499 + MER5B DNA MER1_type 1 144 -34 1581 124 46 11 chr15 29169654 29169936 -72210585 - L1MB2 LINE L1 -5 6166 5875 267 310 150 9 chr15 29170116 29170229 -72210292 + L2 LINE L2 3134 3262 -10 1788 141 3 33 chr15 29170251 29170550 -72209971 - AluSx SINE Alu -22 290 1 1841 123 24 24 chr15 29171909 29172201 -72208320 - AluJo SINE Alu -11 301 10 940 241 28 0 chr15 29172945 29173157 -72207364 - MER58A DNA MER1_type -2 222 5 2351 111 67 8 chr15 29173190 29173624 -72206897 + MER1A DNA MER1_type 49 528 -1 1074 86 14 0 chr15 29173719 29173859 -72206662 + AluSg/x SINE Alu 154 295 -15 1140 195 47 9 chr15 29173883 29174098 -72206423 - AluJb SINE Alu -89 223 1 23 78 0 0 chr15 29174348 29174399 -72206122 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr15 29175278 29175301 -72205220 + AT_rich Low_complexity Low_complexity 1 23 0 210 37 0 0 chr15 29175464 29175491 -72205030 + (TA)n Simple_repeat Simple_repeat 1 27 0 2048 75 0 4 chr15 29175513 29175766 -72204755 + AluSq SINE Alu 45 296 -17 1483 233 0 0 chr15 29175769 29176044 -72204477 - AluSx SINE Alu -37 275 1 239 273 11 11 chr15 29176044 29176074 -72204447 + (TA)n Simple_repeat Simple_repeat 1 30 -58 2050 148 33 0 chr15 29176074 29176411 -72204110 + MER7A DNA MER2_type 1 346 0 239 273 11 11 chr15 29176411 29176468 -72204053 + (TA)n Simple_repeat Simple_repeat 29 88 0 1078 266 54 61 chr15 29176657 29177216 -72203305 - LTR67 LTR ERVL 0 557 3 2402 184 70 13 chr15 29177343 29177940 -72202581 - L1M2 LINE L1 -1720 4426 3796 428 190 99 0 chr15 29177953 29178074 -72202447 + L1M2 LINE L1 4397 4529 -1617 * 2538 185 20 31 chr15 29178073 29178810 -72201711 + L1M2 LINE L1 5073 5792 -520 509 93 0 157 chr15 29178848 29178898 -72201623 - LTR62 LTR ERVK -626 93 67 2348 84 0 3 chr15 29178898 29179197 -72201324 - AluY SINE Alu -13 298 1 509 93 0 157 chr15 29179197 29179254 -72201267 - LTR62 LTR ERVK -652 67 3 1948 164 3 0 chr15 29179575 29179873 -72200648 + AluJb SINE Alu 1 299 -13 2342 88 10 0 chr15 29180416 29180721 -72199800 + AluY SINE Alu 1 308 -3 284 106 64 0 chr15 29181417 29181464 -72199057 + MLT1C LTR MaLR 1 50 -417 25 0 0 0 chr15 29181565 29181590 -72198931 + AT_rich Low_complexity Low_complexity 1 25 0 2457 91 0 0 chr15 29181612 29181919 -72198602 + AluSx SINE Alu 1 307 -5 669 305 40 14 chr15 29181993 29182216 -72198305 + MIR SINE MIR 25 253 -9 1633 193 23 3 chr15 29182307 29182607 -72197914 + AluJb SINE Alu 1 306 -6 225 228 18 18 chr15 29183062 29183119 -72197402 - MIR3 SINE MIR -32 176 120 1021 160 27 18 chr15 29183124 29183349 -72197172 - L1MB3 LINE L1 -363 5820 5594 1858 142 19 19 chr15 29183351 29183676 -72196845 + L1MB3 LINE L1 5852 6176 -7 245 337 51 10 chr15 29183739 29183837 -72196684 - MIR3 SINE MIR -98 110 9 853 161 37 0 chr15 29184849 29185010 -72195511 - L1MB3 LINE L1 -8 6175 6009 1123 172 103 11 chr15 29185277 29185539 -72194982 - L1MB3 LINE L1 -188 5995 5710 2027 95 26 43 chr15 29186610 29186915 -72193606 + AluSx SINE Alu 1 300 -12 403 296 122 24 chr15 29188817 29189035 -72191486 + MIR SINE MIR 20 256 -6 2436 80 3 0 chr15 29189652 29189952 -72190569 - AluSp SINE Alu -12 301 1 225 274 0 0 chr15 29190493 29190544 -72189977 + L1 LINE L1 4059 4109 -2037 617 241 91 26 chr15 29190636 29190868 -72189653 + L1MEc LINE L1 1745 1991 -4405 397 310 33 27 chr15 29191172 29191356 -72189165 + L1 LINE L1 4891 5075 -1071 1391 266 95 8 chr15 29191374 29191871 -72188650 + L1MC4 LINE L1 6454 6993 -1049 6146 135 80 9 chr15 29191911 29193176 -72187345 + L1PBa LINE L1 1 1500 -5363 2183 83 20 4 chr15 29193172 29193523 -72186998 + L1P5 LINE L1 5210 5565 -586 * 1626 105 43 23 chr15 29193527 29193785 -72186736 - THE1C LTR MaLR -2 373 111 259 312 168 39 chr15 29194432 29194560 -72185961 + MIR SINE MIR 7 149 -61 802 167 8 15 chr15 29194565 29194697 -72185824 + AluJo SINE Alu 6 136 -176 1964 136 21 0 chr15 29194706 29194986 -72185535 - AluSx SINE Alu -26 286 1 29 28 0 0 chr15 29194988 29195024 -72185497 + AT_rich Low_complexity Low_complexity 1 36 0 2219 64 0 4 chr15 29195024 29195315 -72185206 + AluY SINE Alu 21 310 0 180 300 33 0 chr15 29195324 29195384 -72185137 + MIR SINE MIR 178 239 -23 2161 183 140 78 chr15 29195581 29196182 -72184339 + MER69 DNA AcHobo 3 640 -1886 937 148 74 5 chr15 29196199 29196388 -72184133 + MER69 DNA AcHobo 1867 2068 -458 2528 73 0 0 chr15 29198704 29199005 -72181516 + AluY SINE Alu 1 301 -10 2197 97 7 0 chr15 29200240 29200519 -72180002 + AluSq SINE Alu 1 281 -32 309 51 0 0 chr15 29200522 29200561 -72179960 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 659 241 142 0 chr15 29200561 29200773 -72179748 - MER112 DNA MER1_type -18 242 1 306 0 0 0 chr15 29201187 29201221 -72179300 + (CA)n Simple_repeat Simple_repeat 1 34 0 * 513 0 0 0 chr15 29201220 29201277 -72179244 + (GA)n Simple_repeat Simple_repeat 2 58 0 1959 152 0 0 chr15 29201372 29201655 -72178866 + AluSx SINE Alu 1 283 -29 1566 180 58 4 chr15 29201788 29202066 -72178455 + AluJo SINE Alu 1 293 -19 484 309 100 18 chr15 29202444 29202664 -72177857 + MIR SINE MIR 7 244 -18 227 352 14 0 chr15 29202682 29202753 -72177768 + MIR3 SINE MIR 108 179 -29 408 200 0 0 chr15 29203160 29203250 -72177271 + (TATATG)n Simple_repeat Simple_repeat 1 90 0 22 0 0 0 chr15 29203571 29203593 -72176928 + AT_rich Low_complexity Low_complexity 1 22 0 426 328 115 10 chr15 29203730 29204035 -72176486 + L1M4 LINE L1 3964 4300 -1846 358 246 70 25 chr15 29204096 29204295 -72176226 + L1M4 LINE L1 4398 4605 -1541 289 325 68 0 chr15 29204354 29204545 -72175976 + L1M4 LINE L1 4628 4831 -1315 2565 58 0 0 chr15 29204545 29204854 -72175667 + AluY SINE Alu 1 309 -2 2563 40 3 0 chr15 29204948 29205244 -72175277 + AluY SINE Alu 1 297 -14 1897 179 28 17 chr15 29205249 29205606 -72174915 + MLT1A2 LTR MaLR 3 363 -11 285 98 0 0 chr15 29205628 29205669 -72174852 + (A)n Simple_repeat Simple_repeat 1 41 0 2607 55 0 0 chr15 29205869 29206177 -72174344 + AluY SINE Alu 1 308 -3 304 215 35 62 chr15 29206178 29206322 -72174199 + L1M4 LINE L1 5152 5291 -855 2144 97 7 4 chr15 29206557 29206835 -72173686 - AluSq SINE Alu -34 279 1 361 310 103 13 chr15 29207250 29207405 -72173116 + MIR3 SINE MIR 29 197 -11 1696 224 11 32 chr15 29207411 29207572 -72172949 + MLT1A2 LTR MaLR 1 164 -210 621 118 0 0 chr15 29207572 29207665 -72172856 - L1MB2 LINE L1 -1 6170 6078 1696 224 11 32 chr15 29207665 29207874 -72172647 + MLT1A2 LTR MaLR 164 363 -11 2340 93 0 0 chr15 29208243 29208534 -72171987 - AluSg SINE Alu -19 291 1 393 280 35 14 chr15 29208708 29208851 -72171670 - MER103 DNA DNA -11 155 10 2532 71 0 3 chr15 29210134 29210445 -72170076 - AluY SINE Alu -1 310 1 3396 145 79 37 chr15 29210649 29211261 -72169260 + L1MB2 LINE L1 5481 6124 -47 1898 131 50 3 chr15 29211261 29211544 -72168977 + AluSx SINE Alu 14 309 -3 3396 145 79 37 chr15 29211544 29211587 -72168934 + L1MB2 LINE L1 6124 6164 -7 828 186 0 0 chr15 29211599 29211728 -72168793 - FLAM_C SINE Alu -4 129 1 2107 51 16 0 chr15 29212225 29212479 -72168042 + AluY SINE Alu 1 258 -53 195 42 0 0 chr15 29212593 29212617 -72167904 + (A)n Simple_repeat Simple_repeat 1 24 0 332 196 157 39 chr15 29212837 29212939 -72167582 - L2 LINE L2 -2 3311 3198 2461 73 0 0 chr15 29213110 29213411 -72167110 + AluY SINE Alu 1 301 -10 1854 169 3 7 chr15 29213893 29214194 -72166327 - AluJo SINE Alu -12 300 1 180 317 5 156 chr15 29214195 29214394 -72166127 + L2 LINE L2 2588 2756 -558 289 222 69 0 chr15 29214415 29214487 -72166034 + L1MEc LINE L1 27 103 -6293 1609 205 20 11 chr15 29214536 29214892 -72165629 + L1MEc LINE L1 569 927 -5469 327 292 124 27 chr15 29215504 29215689 -72164832 + L2 LINE L2 2550 2752 -562 2215 100 3 7 chr15 29215770 29216070 -72164451 - AluSc SINE Alu -10 299 1 421 196 12 0 chr15 29216072 29216174 -72164347 - L1MC4 LINE L1 -2 8040 7672 213 156 0 0 chr15 29216205 29216237 -72164284 + MIR SINE MIR 218 249 -13 201 245 41 0 chr15 29216237 29216254 -72164267 + L2 LINE L2 3263 3313 0 292 316 43 8 chr15 29216292 29216409 -72164112 + HAL1 LINE L1 3 123 -2384 364 292 211 34 chr15 29216617 29217035 -72163486 - L2 LINE L2 -4 3309 2818 551 224 71 41 chr15 29217061 29217231 -72163290 - MER5B DNA MER1_type 0 178 4 311 284 34 54 chr15 29217238 29217386 -72163135 + HAL1 LINE L1 473 617 -1890 1079 153 12 0 chr15 29217694 29217864 -72162657 + MER2 DNA MER2_type 22 193 -152 29 60 0 0 chr15 29217868 29217918 -72162603 + AT_rich Low_complexity Low_complexity 1 50 0 2462 79 0 0 chr15 29218276 29218580 -72161941 - AluSg1 SINE Alu -5 304 1 27 29 0 0 chr15 29218580 29218614 -72161907 + AT_rich Low_complexity Low_complexity 1 34 0 2137 117 3 3 chr15 29218859 29219158 -72161363 - AluSx SINE Alu -13 299 1 2128 89 20 14 chr15 29219213 29219505 -72161016 - AluY SINE Alu -17 294 1 1164 159 45 0 chr15 29219506 29219726 -72160795 + L1MA4 LINE L1 6060 6289 -11 1058 184 32 5 chr15 29219731 29219948 -72160573 + L1MB7 LINE L1 5962 6184 0 4727 115 49 7 chr15 29219961 29220691 -72159830 + L1MA9 LINE L1 5552 6312 0 1808 170 6 6 chr15 29220909 29221220 -72159301 + AluJo SINE Alu 1 311 -1 246 183 33 17 chr15 29221220 29221280 -72159241 + GA-rich Low_complexity Low_complexity 1 61 0 1516 55 6 0 chr15 29221579 29221761 -72158760 + L1PA6 LINE L1 5972 6154 0 8959 52 0 14 chr15 29223127 29224992 -72155529 + L1PA6 LINE L1 4291 6144 -10 796 161 71 30 chr15 29226518 29226719 -72153802 - L1MC/D LINE L1 -748 5398 5305 2583 183 50 34 chr15 29227592 29228073 -72152448 + L1ME2 LINE L1 5558 6052 -112 795 239 68 0 chr15 29228073 29228249 -72152272 + MER5A DNA MER1_type 1 188 -1 2583 183 50 34 chr15 29228249 29228362 -72152159 + L1ME2 LINE L1 6052 6162 -2 1913 155 0 34 chr15 29228484 29228806 -72151715 + AluSx SINE Alu 2 312 0 309 328 21 47 chr15 29229223 29229415 -72151106 + L2 LINE L2 2897 3083 -189 191 277 114 54 chr15 29229528 29229694 -72150827 + L2 LINE L2 2717 2892 -422 205 348 72 0 chr15 29230236 29230305 -72150216 + MIR3 SINE MIR 108 181 -27 22 35 0 0 chr15 29230667 29230696 -72149825 + AT_rich Low_complexity Low_complexity 1 29 0 212 298 117 11 chr15 29230987 29231081 -72149440 + L2 LINE L2 3201 3304 -9 1937 154 0 26 chr15 29231182 29231493 -72149028 - AluJo SINE Alu -9 303 1 2728 42 0 0 chr15 29231718 29232027 -72148494 + AluY SINE Alu 3 311 0 585 308 53 19 chr15 29232512 29232775 -72147746 + L2 LINE L2 2358 2629 -685 1256 102 6 0 chr15 29232955 29233132 -72147389 + AluY SINE Alu 134 311 0 250 233 14 27 chr15 29233280 29233353 -72147168 + MIR3 SINE MIR 135 206 -2 279 120 0 80 chr15 29233370 29233420 -72147101 - L2 LINE L2 -17 3255 3210 2489 86 0 0 chr15 29233697 29234001 -72146520 + AluSx SINE Alu 1 304 -8 613 311 40 4 chr15 29235128 29235353 -72145168 + MIR SINE MIR 28 260 -2 521 86 0 14 chr15 29236872 29236970 -72143551 + AluSg/x SINE Alu 215 311 0 2214 81 24 3 chr15 29237991 29238287 -72142234 + AluSg SINE Alu 1 302 -8 498 226 53 111 chr15 29239182 29239425 -72141096 - L2 LINE L2 0 3313 3085 648 139 115 25 chr15 29239453 29239575 -72140946 + FLAM_C SINE Alu 1 133 0 2392 82 0 31 chr15 29239656 29239974 -72140547 + AluSg SINE Alu 1 308 -2 1930 116 47 0 chr15 29239986 29240263 -72140258 + AluSx SINE Alu 1 290 -22 519 233 9 9 chr15 29240340 29240456 -72140065 - LTR67 LTR ERVL -10 547 432 937 142 116 5 chr15 29240614 29240804 -72139717 + L1MC4 LINE L1 7692 7902 -140 234 128 0 0 chr15 29240840 29240879 -72139642 + (TG)n Simple_repeat Simple_repeat 2 40 0 371 179 60 12 chr15 29241316 29241400 -72139121 + L1ME4a LINE L1 5976 6063 -58 314 277 44 66 chr15 29241954 29242091 -72138430 + L3 LINE CR1 1298 1431 -146 2852 220 52 57 chr15 29242113 29242331 -72138190 + L1M4 LINE L1 26 244 -6298 2120 102 0 46 chr15 29242331 29242636 -72137885 + AluSx SINE Alu 14 304 -8 2852 220 52 57 chr15 29242636 29243243 -72137278 + L1M4 LINE L1 244 847 -5695 1595 204 6 10 chr15 29243368 29243681 -72136840 + AluJb SINE Alu 1 312 0 483 285 25 38 chr15 29243755 29243913 -72136608 - MIR SINE MIR -75 187 32 986 122 0 0 chr15 29244486 29244617 -72135904 + FLAM_C SINE Alu 3 133 0 2211 108 0 14 chr15 29245057 29245353 -72135168 + AluSx SINE Alu 1 292 -20 2009 102 63 3 chr15 29245429 29245713 -72134808 - AluY SINE Alu -10 301 1 1562 162 47 7 chr15 29245725 29246003 -72134518 - AluJo SINE Alu -23 289 1 2525 84 0 0 chr15 29246253 29246562 -72133959 - AluSq SINE Alu -4 309 1 336 102 0 0 chr15 29247088 29247137 -72133384 + (CA)n Simple_repeat Simple_repeat 2 50 0 536 281 34 0 chr15 29247691 29247837 -72132684 + Charlie2 DNA MER1_type 6 156 -2626 2493 243 105 12 chr15 29247916 29248319 -72132202 + Charlie2 DNA MER1_type 1851 2215 -647 2163 114 3 3 chr15 29248319 29248617 -72131904 + AluSx SINE Alu 1 298 -14 2493 243 105 12 chr15 29248617 29248879 -72131642 + Charlie2 DNA MER1_type 2215 2451 -411 2191 116 3 3 chr15 29248879 29249181 -72131340 - AluSc SINE Alu -7 302 1 2493 243 105 12 chr15 29249181 29249257 -72131264 + Charlie2 DNA MER1_type 2451 2519 -343 1735 178 6 19 chr15 29249257 29249572 -72130949 + AluJo SINE Alu 1 311 -1 2493 243 105 12 chr15 29249572 29249743 -72130778 + Charlie2 DNA MER1_type 2519 2850 -12 370 300 18 0 chr15 29250561 29250671 -72129850 + MIR SINE MIR 2 113 -149 404 143 63 0 chr15 29250931 29250994 -72129527 + AluS SINE Alu 226 292 -19 2007 98 11 21 chr15 29251003 29251326 -72129195 - AluY SINE Alu 0 320 1 275 284 0 12 chr15 29251327 29251408 -72129113 - L1ME4a LINE L1 -88 6033 5954 2502 37 0 47 chr15 29251410 29251731 -72128790 - AluY SINE Alu -5 306 1 2500 93 0 0 chr15 29251884 29252197 -72128324 - AluSp SINE Alu 0 313 1 2244 127 0 10 chr15 29252360 29252674 -72127847 - AluSx SINE Alu -1 311 1 2021 195 69 25 chr15 29252742 29253189 -72127332 - MLT1C LTR MaLR 0 467 1 2284 97 0 19 chr15 29253273 29253584 -72126937 + AluSc SINE Alu 1 305 -4 2086 149 12 18 chr15 29253585 29253927 -72126594 - THE1C LTR MaLR -35 340 1 191 272 250 0 chr15 29253990 29254082 -72126439 - L2 LINE L2 0 3313 3199 268 206 192 0 chr15 29256877 29256950 -72123571 + MIR SINE MIR 70 156 -106 845 184 75 9 chr15 29256973 29257231 -72123290 + L1MA9 LINE L1 5908 6280 -32 25 0 0 0 chr15 29257231 29257256 -72123265 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr15 29258013 29258039 -72122482 + AT_rich Low_complexity Low_complexity 1 26 0 2310 100 7 0 chr15 29258097 29258396 -72122125 + AluY SINE Alu 1 301 -10 2105 106 0 3 chr15 29258841 29259124 -72121397 + AluSx SINE Alu 14 295 -17 45 0 0 0 chr15 29259124 29259169 -72121352 + AT_rich Low_complexity Low_complexity 1 45 0 226 246 49 16 chr15 29259369 29259430 -72121091 - MIR3 SINE MIR -31 177 115 262 244 171 12 chr15 29259434 29259516 -72121005 - L2 LINE L2 -2 3270 3176 239 229 0 0 chr15 29259521 29259569 -72120952 - MIR SINE MIR -103 105 58 466 86 43 29 chr15 29259897 29259967 -72120554 - L1PA14 LINE L1 -4 6157 6087 2263 103 0 0 chr15 29260087 29260377 -72120144 - AluSc SINE Alu -19 290 1 2269 86 10 10 chr15 29260592 29260893 -72119628 - AluSq SINE Alu -12 301 1 2272 109 0 0 chr15 29261191 29261485 -72119036 + AluSq SINE Alu 1 294 -19 2160 101 7 3 chr15 29261487 29261783 -72118738 + AluSq SINE Alu 1 297 -16 218 281 0 16 chr15 29263352 29263416 -72117105 + GA-rich Low_complexity Low_complexity 3 65 0 340 196 0 0 chr15 29263508 29263573 -72116948 - Alu SINE Alu -250 52 1 357 306 69 38 chr15 29263759 29263919 -72116602 - MIR3 SINE MIR -23 185 21 401 303 23 0 chr15 29264009 29264141 -72116380 + MER103 DNA DNA 31 165 -1 1247 158 0 87 chr15 29264313 29264566 -72115955 + AluJo SINE Alu 24 254 -58 2097 117 0 32 chr15 29264688 29264997 -72115524 - AluSc SINE Alu -10 299 1 592 253 56 0 chr15 29265040 29265202 -72115319 - MIR SINE MIR -16 246 76 840 189 7 0 chr15 29265205 29265358 -72115163 + FRAM SINE Alu 1 153 -23 1915 162 41 36 chr15 29265506 29265870 -72114651 - MLT2D LTR ERVL -48 366 1 2331 137 118 44 chr15 29265874 29266111 -72114410 + LTR54 LTR ERV1 1 219 -291 351 0 0 0 chr15 29266111 29266150 -72114371 + (CA)n Simple_repeat Simple_repeat 2 40 0 2331 137 118 44 chr15 29266150 29266387 -72114134 + LTR54 LTR ERV1 219 510 0 2299 116 0 10 chr15 29266441 29266752 -72113769 - AluSx SINE Alu -4 308 1 318 309 129 72 chr15 29267108 29267525 -72112996 + L2 LINE L2 2817 3257 -15 188 247 86 65 chr15 29267878 29267971 -72112550 - L2 LINE L2 -908 2406 2312 1933 118 26 4 chr15 29268151 29268423 -72112098 + AluSq SINE Alu 3 280 -33 1403 43 0 0 chr15 29268423 29268586 -72111935 + AluY SINE Alu 134 296 -15 296 245 65 102 chr15 29268876 29269247 -72111274 + HAL1b LINE L1 1195 6121 0 2456 66 0 3 chr15 29269829 29270131 -72110390 + AluY SINE Alu 1 301 -10 1785 152 3 36 chr15 29274081 29274383 -72106138 + AluJo SINE Alu 2 293 -19 1638 184 63 79 chr15 29275560 29275674 -72104847 - L1MC4 LINE L1 -6 8036 7922 195 42 0 0 chr15 29275674 29275698 -72104823 + (TG)n Simple_repeat Simple_repeat 1 24 0 1638 184 63 79 chr15 29275698 29275780 -72104741 - L1MC4 LINE L1 -120 7922 7840 1637 162 92 3 chr15 29275780 29276064 -72104457 - AluJb SINE Alu -3 309 1 1638 184 63 79 chr15 29276064 29276360 -72104161 - L1MC4 LINE L1 -202 7840 7551 2592 40 0 0 chr15 29276371 29276668 -72103853 - AluY SINE Alu -14 297 1 1733 97 0 0 chr15 29276697 29276914 -72103607 + AluSg SINE Alu 1 217 -93 729 159 0 0 chr15 29276914 29277027 -72103494 + AluSc SINE Alu 186 298 -11 641 184 66 33 chr15 29277036 29277188 -72103333 - L1MC4a LINE L1 -364 7444 7288 724 248 78 36 chr15 29277212 29277519 -72103002 - L1MC4a LINE L1 -1429 6379 6060 2060 103 67 36 chr15 29277519 29277878 -72102643 - THE1C LTR MaLR 0 375 6 253 250 125 8 chr15 29277953 29278073 -72102448 - HAL1 LINE L1 -131 2376 2243 1758 154 44 14 chr15 29278841 29279134 -72101387 - AluJb SINE Alu -10 302 1 1742 104 0 0 chr15 29279625 29279847 -72100674 - AluSx SINE Alu -52 260 39 485 33 33 0 chr15 29279847 29279908 -72100613 - MER75B DNA T2_type -130 113 51 616 113 0 0 chr15 29281027 29281107 -72099414 - AluS SINE Alu -232 80 1 1007 111 0 20 chr15 29281526 29281679 -72098842 - AluSg/x SINE Alu -6 304 155 4625 158 46 14 chr15 29281680 29282586 -72097935 - L1PB4 LINE L1 -27 6129 5180 1629 163 0 51 chr15 29282623 29282917 -72097604 - AluJb SINE Alu -33 279 1 1157 120 0 0 chr15 29283004 29283162 -72097359 + AluSg SINE Alu 1 158 -152 2197 97 7 0 chr15 29284031 29284310 -72096211 + AluSq SINE Alu 1 281 -32 309 51 0 0 chr15 29284313 29284352 -72096169 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 659 241 142 0 chr15 29284352 29284564 -72095957 - MER112 DNA MER1_type -18 242 1 306 0 0 0 chr15 29284978 29285012 -72095509 + (CA)n Simple_repeat Simple_repeat 1 34 0 * 513 0 0 0 chr15 29285011 29285068 -72095453 + (GA)n Simple_repeat Simple_repeat 2 58 0 1959 152 0 0 chr15 29285163 29285446 -72095075 + AluSx SINE Alu 1 283 -29 1566 180 58 4 chr15 29285579 29285857 -72094664 + AluJo SINE Alu 1 293 -19 484 309 100 18 chr15 29286235 29286455 -72094066 + MIR SINE MIR 7 244 -18 227 352 14 0 chr15 29286473 29286544 -72093977 + MIR3 SINE MIR 108 179 -29 408 200 0 0 chr15 29286951 29287041 -72093480 + (TATATG)n Simple_repeat Simple_repeat 1 90 0 22 0 0 0 chr15 29287362 29287384 -72093137 + AT_rich Low_complexity Low_complexity 1 22 0 426 328 115 10 chr15 29287521 29287826 -72092695 + L1M4 LINE L1 3964 4300 -1846 358 246 70 25 chr15 29287887 29288086 -72092435 + L1M4 LINE L1 4398 4605 -1541 289 325 68 0 chr15 29288145 29288336 -72092185 + L1M4 LINE L1 4628 4831 -1315 2565 58 0 0 chr15 29288336 29288645 -72091876 + AluY SINE Alu 1 309 -2 1618 185 58 92 chr15 29288714 29288739 -72091782 + L1MC4 LINE L1 7524 7548 -494 2559 40 3 0 chr15 29288739 29289035 -72091486 + AluY SINE Alu 1 297 -14 1618 185 58 92 chr15 29289035 29289342 -72091179 + L1MC4 LINE L1 7548 7864 -178 1628 163 92 3 chr15 29289342 29289625 -72090896 + AluJb SINE Alu 1 308 -4 1618 185 58 92 chr15 29289625 29289707 -72090814 + L1MC4 LINE L1 7864 7947 -95 195 42 0 0 chr15 29289707 29289731 -72090790 + (CA)n Simple_repeat Simple_repeat 1 24 0 1618 185 58 92 chr15 29289731 29289844 -72090677 + L1MC4 LINE L1 7947 8035 -7 1801 152 3 36 chr15 29291022 29291325 -72089196 - AluJo SINE Alu -18 294 2 2509 66 0 0 chr15 29295274 29295577 -72084944 - AluY SINE Alu -8 303 1 296 247 62 102 chr15 29296159 29296531 -72083990 - HAL1b LINE L1 0 6121 1195 1403 43 0 0 chr15 29296821 29296984 -72083537 - AluY SINE Alu -15 296 134 1933 118 26 4 chr15 29296984 29297256 -72083265 - AluSq SINE Alu -33 280 3 181 247 86 65 chr15 29297436 29297529 -72082992 + L2 LINE L2 2312 2406 -908 318 309 129 72 chr15 29297882 29298299 -72082222 - L2 LINE L2 -15 3257 2817 2299 116 0 10 chr15 29298655 29298966 -72081555 + AluSx SINE Alu 1 308 -4 2355 139 118 44 chr15 29299020 29299257 -72081264 - LTR54 LTR ERV1 0 510 292 405 0 0 0 chr15 29299257 29299302 -72081219 + (TG)n Simple_repeat Simple_repeat 2 46 0 2355 139 118 44 chr15 29299302 29299539 -72080982 - LTR54 LTR ERV1 -218 292 1 1930 159 41 36 chr15 29299543 29299907 -72080614 + MLT2D LTR ERVL 1 366 -48 840 189 7 0 chr15 29300055 29300208 -72080313 - FRAM SINE Alu -23 153 1 578 259 56 0 chr15 29300211 29300373 -72080148 + MIR SINE MIR 76 246 -16 2121 116 0 41 chr15 29300416 29300735 -72079786 + AluSc SINE Alu 1 306 -3 1247 158 0 87 chr15 29300851 29301104 -72079417 - AluJo SINE Alu -58 254 24 401 303 23 0 chr15 29301276 29301408 -72079113 - MER103 DNA DNA -1 165 31 356 325 69 38 chr15 29301498 29301658 -72078863 + MIR3 SINE MIR 21 185 -23 569 156 0 33 chr15 29301845 29301935 -72078586 + AluS SINE Alu 2 88 -225 207 307 0 40 chr15 29301939 29302014 -72078507 - MER5A DNA MER1_type -7 182 111 2314 81 0 3 chr15 29302017 29302343 -72078178 - AluY SINE Alu 0 325 1 1936 137 3 23 chr15 29302347 29302646 -72077875 - AluSx SINE Alu -19 293 1 2409 86 3 0 chr15 29302649 29302952 -72077569 - AluSp SINE Alu -9 304 1 24683 163 16 22 chr15 29303002 29304519 -72076002 - L1PA11 LINE L1 -3 7609 6084 234 0 0 0 chr15 29304519 29304545 -72075976 + (TA)n Simple_repeat Simple_repeat 2 27 0 2266 123 0 0 chr15 29304545 29304847 -72075674 - AluSx SINE Alu -10 302 1 24683 163 16 22 chr15 29304847 29307678 -72072843 - L1PA11 LINE L1 -1527 6085 2488 2254 120 0 0 chr15 29307678 29307979 -72072542 + AluSx SINE Alu 1 301 -11 24683 163 16 22 chr15 29307979 29309692 -72070829 - L1PA11 LINE L1 -5124 2488 766 961 158 67 6 chr15 29309692 29309815 -72070706 + AluJb SINE Alu 1 138 -174 255 31 0 0 chr15 29309815 29309847 -72070674 + (CA)n Simple_repeat Simple_repeat 2 33 0 961 158 67 6 chr15 29309847 29309888 -72070633 + AluJb SINE Alu 138 175 -137 779 157 0 0 chr15 29309995 29310133 -72070388 + AluSg/x SINE Alu 173 310 0 3238 204 31 51 chr15 29310133 29310496 -72070025 - L1PA11 LINE L1 -6809 772 403 2584 51 0 6 chr15 29310496 29310808 -72069713 + AluY SINE Alu 2 311 0 3238 204 31 51 chr15 29310808 29311227 -72069294 - L1PA11 LINE L1 -7178 403 6 249 305 0 0 chr15 29311242 29311301 -72069220 - MER5A DNA MER1_type -122 67 9 378 272 126 58 chr15 29312294 29312555 -72067966 + L3b LINE CR1 1268 1546 -37 23 33 0 0 chr15 29312785 29312815 -72067706 + AT_rich Low_complexity Low_complexity 1 30 0 2383 60 7 0 chr15 29312819 29313103 -72067418 - AluY SINE Alu -25 286 1 2680 239 25 16 chr15 29313434 29314117 -72066404 - L2 LINE L2 -1272 2042 1354 2532 58 0 0 chr15 29314611 29314906 -72065615 - AluY SINE Alu -16 295 1 513 150 230 0 chr15 29314982 29315082 -72065439 - MER5A DNA MER1_type -15 174 52 1714 154 7 11 chr15 29315223 29315509 -72065012 - AluJo SINE Alu -27 285 1 180 212 192 20 chr15 29316008 29316107 -72064414 - L3 LINE CR1 -10 1567 1452 2247 87 3 20 chr15 29316235 29316533 -72063988 + AluSq SINE Alu 1 293 -20 290 203 68 0 chr15 29316797 29316856 -72063665 + MIR SINE MIR 48 110 -152 253 184 35 23 chr15 29316888 29316981 -72063540 + (TTATA)n Simple_repeat Simple_repeat 1 94 0 341 149 170 53 chr15 29317675 29317769 -72062752 - L2 LINE L2 0 3313 3209 22 56 0 0 chr15 29318032 29318068 -72062453 + GC_rich Low_complexity Low_complexity 1 36 0 382 246 110 81 chr15 29318201 29318294 -72062227 + L1M2 LINE L1 446 535 -6314 195 114 0 0 chr15 29318294 29318329 -72062192 + (CCG)n Simple_repeat Simple_repeat 2 36 0 382 246 110 81 chr15 29318329 29318507 -72062014 + L1M2 LINE L1 535 725 -6124 195 42 0 0 chr15 29318596 29318620 -72061901 + (CGGGG)n Simple_repeat Simple_repeat 3 26 0 576 258 60 12 chr15 29319149 29319316 -72061205 - MIR SINE MIR -73 189 15 529 334 9 74 chr15 29319508 29319831 -72060690 - L2 LINE L2 -24 3248 2947 590 262 67 0 chr15 29319875 29320039 -72060482 - MIR SINE MIR -10 252 78 1295 189 102 0 chr15 29320041 29320306 -72060215 + AluJb SINE Alu 1 292 -20 285 182 0 0 chr15 29320308 29320352 -72060169 - MSTC LTR MaLR -384 44 1 1118 191 48 9 chr15 29320466 29320676 -72059845 - MER20 DNA MER1_type 0 219 2 1001 261 42 8 chr15 29321056 29321294 -72059227 - MIR SINE MIR -8 254 9 2545 66 0 7 chr15 29321790 29322095 -72058426 - AluSp SINE Alu -9 304 2 688 155 218 0 chr15 29322141 29322283 -72058238 + MER5A DNA MER1_type 2 174 -15 387 239 162 74 chr15 29322741 29323118 -72057403 + L1MC5 LINE L1 7533 7942 -19 26 0 0 0 chr15 29323158 29323184 -72057337 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr15 29323195 29323225 -72057296 + AT_rich Low_complexity Low_complexity 1 30 0 288 0 0 0 chr15 29323584 29323616 -72056905 + (A)n Simple_repeat Simple_repeat 1 32 0 33 66 0 0 chr15 29326112 29326173 -72054348 + AT_rich Low_complexity Low_complexity 1 61 0 404 19 0 19 chr15 29327994 29328048 -72052473 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 24 32 0 0 chr15 29328103 29328134 -72052387 + AT_rich Low_complexity Low_complexity 1 31 0 809 138 0 9 chr15 29329077 29329193 -72051328 + AluJ SINE Alu 22 136 -176 2169 123 3 0 chr15 29330187 29330487 -72050034 + AluSq SINE Alu 1 301 -12 2268 109 7 0 chr15 29331146 29331449 -72049072 + AluSg SINE Alu 1 305 -5 22 0 0 0 chr15 29332165 29332187 -72048334 + AT_rich Low_complexity Low_complexity 1 22 0 860 199 23 0 chr15 29333292 29333463 -72047058 + AluJ SINE Alu 137 311 -1 404 128 13 0 chr15 29333495 29333573 -72046948 + GA-rich Low_complexity Low_complexity 4 82 0 2063 128 3 0 chr15 29333882 29334203 -72046318 + AluSx SINE Alu 1 322 0 1423 169 139 0 chr15 29334741 29335008 -72045513 + AluJb SINE Alu 1 304 -8 345 290 73 8 chr15 29335056 29335180 -72045341 + MIR3 SINE MIR 67 198 -10 335 339 99 12 chr15 29337141 29337312 -72043209 + MIR SINE MIR 25 210 -52 2045 103 0 97 chr15 29337343 29337674 -72042847 - AluSx SINE Alu -12 300 2 366 23 0 0 chr15 29338637 29338680 -72041841 + (TG)n Simple_repeat Simple_repeat 2 44 0 233 178 0 0 chr15 29338695 29338740 -72041781 - LTR66 LTR ERVL -172 438 394 229 178 0 0 chr15 29338702 29338747 -72041774 + LTR66 LTR ERVL 394 438 -172 * 253 200 0 0 chr15 29339074 29339119 -72041402 + L1MD3 LINE L1 7209 7253 -742 424 213 111 0 chr15 29339132 29339240 -72041281 + MLT1F1 LTR MaLR 6 125 -442 2436 182 70 41 chr15 29339240 29339807 -72040714 + L1MD3 LINE L1 7404 7987 -8 2253 105 3 0 chr15 29339916 29340210 -72040311 - AluSp SINE Alu -18 295 1 965 202 58 123 chr15 29340647 29341093 -72039428 - LTR40c LTR ERVL -5 460 44 214 306 65 0 chr15 29341137 29341199 -72039322 + L2 LINE L2 3169 3234 -38 2602 48 0 10 chr15 29341603 29341917 -72038604 - AluY SINE Alu 0 311 1 2381 76 0 10 chr15 29342163 29342465 -72038056 - AluSc SINE Alu -10 299 1 484 330 48 22 chr15 29343796 29344023 -72036498 + MIR SINE MIR 1 233 -29 205 305 263 34 chr15 29344246 29344603 -72035918 - L3b LINE CR1 -9 1574 1136 309 267 67 7 chr15 29345251 29345386 -72035135 + HAL1 LINE L1 2 144 -2363 2086 93 11 4 chr15 29345432 29345741 -72034780 + AluSx SINE Alu 1 311 0 1158 134 0 0 chr15 29345741 29345913 -72034608 + AluSg/x SINE Alu 134 305 -7 851 125 0 0 chr15 29346880 29347008 -72033513 + L1MA2 LINE L1 6172 6299 -5 2259 78 0 13 chr15 29347613 29347919 -72032602 + AluY SINE Alu 1 302 -9 247 198 83 42 chr15 29349353 29349449 -72031072 - L1ME3A LINE L1 -223 5947 5848 284 239 178 68 chr15 29349452 29349567 -72030954 - L1ME3A LINE L1 -393 5769 5668 3656 121 10 2 chr15 29349567 29350088 -72030433 + MER1A DNA MER1_type 3 527 0 284 239 178 68 chr15 29350088 29350164 -72030357 - L1ME3A LINE L1 -494 5668 5564 33 0 0 0 chr15 29350453 29350486 -72030035 + AT_rich Low_complexity Low_complexity 1 33 0 1935 149 0 16 chr15 29350488 29350797 -72029724 + AluJo SINE Alu 1 304 -8 1003 136 37 61 chr15 29350838 29351052 -72029469 - MER2 DNA MER2_type -135 210 2 408 130 0 0 chr15 29351070 29351139 -72029382 + L1P LINE L1 5105 5173 -973 6727 148 16 28 chr15 29351253 29352554 -72027967 + L1P LINE L1 41 1326 -4820 231 235 129 8 chr15 29352590 29352722 -72027799 + L1M4 LINE L1 5016 5163 -983 277 179 104 9 chr15 29352844 29352950 -72027571 + L1M LINE L1 5313 5428 -2380 2589 240 114 120 chr15 29352951 29353850 -72026671 + L2 LINE L2 749 1777 -1537 701 176 21 28 chr15 29353850 29353992 -72026529 + FLAM_C SINE Alu 1 141 -2 2589 240 114 120 chr15 29353992 29354532 -72025989 + L2 LINE L2 1777 2319 -995 571 260 153 0 chr15 29354532 29354755 -72025766 + LTR33 LTR ERVL 1 257 -264 293 303 72 7 chr15 29354811 29354963 -72025558 + LTR33 LTR ERVL 355 516 -5 1600 242 110 50 chr15 29355012 29355884 -72024637 + L2 LINE L2 2385 3308 -5 2413 86 0 3 chr15 29356526 29356828 -72023693 - AluSq SINE Alu -12 301 1 1586 188 53 35 chr15 29357497 29357874 -72022647 - L1MD2 LINE L1 -19 6340 5957 1025 207 56 64 chr15 29359812 29360328 -72020193 + L1MC5 LINE L1 7406 7917 -44 271 255 81 20 chr15 29360508 29360657 -72019864 - L1ME4a LINE L1 -18 6103 5946 309 266 133 0 chr15 29360793 29360906 -72019615 - L1MC4 LINE L1 -371 7671 7544 308 326 83 45 chr15 29360994 29361282 -72019239 - L1MC4a LINE L1 -397 7411 7113 2393 85 0 0 chr15 29361536 29361831 -72018690 + AluY SINE Alu 1 295 -16 1146 154 0 0 chr15 29362915 29363180 -72017341 - MLT1C-int LTR MaLR -1172 199 7 1729 200 90 18 chr15 29363180 29363615 -72016906 - MLT1C LTR MaLR -1 466 1 1828 167 3 7 chr15 29363645 29363944 -72016577 + AluJo SINE Alu 1 298 -14 312 204 70 56 chr15 29363953 29363991 -72016530 + L1M4c LINE L1 1318 1354 -5030 2287 106 3 0 chr15 29363991 29364294 -72016227 - AluY SINE Alu -7 304 1 312 204 70 56 chr15 29364294 29364397 -72016124 + L1M4c LINE L1 1354 1461 -4923 194 174 22 0 chr15 29364436 29364482 -72016039 + (CA)n Simple_repeat Simple_repeat 2 48 0 760 279 18 30 chr15 29364489 29364826 -72015695 + L1M4c LINE L1 1460 1792 -4592 1008 214 38 51 chr15 29364980 29365211 -72015310 + L1M4c LINE L1 2437 2662 -3720 1453 160 116 29 chr15 29365211 29365486 -72015035 + AluJo SINE Alu 1 299 -13 1008 214 38 51 chr15 29365486 29365647 -72014874 + L1M4c LINE L1 2662 2824 -3558 21 0 0 0 chr15 29365827 29365848 -72014673 + AT_rich Low_complexity Low_complexity 1 21 0 992 175 0 0 chr15 29366551 29366705 -72013816 + FRAM SINE Alu 1 154 -22 2364 107 0 0 chr15 29368559 29368867 -72011654 - AluSx SINE Alu -4 308 1 295 326 131 49 chr15 29369035 29369363 -72011158 - L2 LINE L2 -3 3269 2915 2241 115 0 16 chr15 29369586 29369899 -72010622 + AluSq SINE Alu 1 308 -5 2493 62 3 0 chr15 29370704 29371008 -72009513 + AluY SINE Alu 1 305 -6 1482 62 6 0 chr15 29371497 29371673 -72008848 + AluSp SINE Alu 1 177 -136 568 115 0 0 chr15 29371673 29371760 -72008761 + AluSp SINE Alu 220 306 -7 1646 166 17 34 chr15 29372355 29372651 -72007870 + AluJb SINE Alu 7 297 -15 2202 130 10 0 chr15 29372981 29373289 -72007232 - AluSx SINE Alu -1 311 1 5784 121 127 13 chr15 29373339 29373772 -72006749 + Tigger3b DNA MER2_type 2 384 -2644 5689 68 8 115 chr15 29373772 29374697 -72005824 - LTR12 LTR ERV1 0 826 1 5784 121 127 13 chr15 29374697 29375035 -72005486 + Tigger3b DNA MER2_type 384 682 -2346 197 33 33 0 chr15 29375035 29375065 -72005456 + (CTCA)n Simple_repeat Simple_repeat 1 31 0 5784 121 127 13 chr15 29375065 29375395 -72005126 + Tigger3b DNA MER2_type 682 1230 -1 2504 73 0 0 chr15 29375540 29375840 -72004681 + AluY SINE Alu 1 300 -11 234 224 0 0 chr15 29376734 29376783 -72003738 - Alu SINE Alu -119 180 132 1796 106 8 4 chr15 29376789 29377045 -72003476 - AluSp SINE Alu -7 306 50 422 165 78 52 chr15 29378952 29379067 -72001454 - LTR33 LTR ERVL -376 145 28 2247 101 0 14 chr15 29379070 29379367 -72001154 + AluSc SINE Alu 1 293 -16 23 0 0 0 chr15 29379412 29379435 -72001086 + AT_rich Low_complexity Low_complexity 1 23 0 2084 98 3 73 chr15 29379834 29380161 -72000360 + AluSx SINE Alu 1 304 -8 2270 103 0 0 chr15 29380658 29380948 -71999573 + AluSx SINE Alu 1 290 -22 2424 91 0 3 chr15 29380959 29381267 -71999254 + AluSq SINE Alu 1 307 -6 1197 265 75 16 chr15 29381267 29381720 -71998801 + L1MC4a LINE L1 5434 5913 -1895 27 96 0 0 chr15 29381783 29381866 -71998655 + AT_rich Low_complexity Low_complexity 1 83 0 201 74 0 0 chr15 29381896 29381923 -71998598 + (TA)n Simple_repeat Simple_repeat 1 27 0 1010 131 16 60 chr15 29381948 29382131 -71998390 - FAM SINE Alu 0 175 1 604 216 39 64 chr15 29382353 29382474 -71998047 - MER90 LTR ERV1 -13 562 446 2318 91 0 14 chr15 29382474 29382771 -71997750 - AluSg SINE Alu -17 293 1 604 216 39 64 chr15 29382771 29382853 -71997668 - MER90 LTR ERV1 -129 446 364 449 258 37 37 chr15 29382902 29383065 -71997456 - LTR65 LTR ERV1 -506 163 1 198 0 0 0 chr15 29383234 29383256 -71997265 + (TG)n Simple_repeat Simple_repeat 2 23 0 225 250 208 14 chr15 29383558 29383630 -71996891 + MIR3 SINE MIR 88 173 -35 1001 58 0 7 chr15 29383846 29383983 -71996538 - MER75 DNA T2_type 0 514 379 702 137 0 0 chr15 29383984 29384086 -71996435 + AluSp SINE Alu 2 103 -210 249 118 0 0 chr15 29384186 29384220 -71996301 - AluSx SINE Alu -48 253 220 1580 141 4 16 chr15 29384220 29384326 -71996195 - AluSx SINE Alu -73 239 133 2490 34 0 10 chr15 29384326 29384621 -71995900 - AluY SINE Alu -18 293 2 1580 141 4 16 chr15 29384621 29384756 -71995765 - AluSx SINE Alu -179 133 1 232 310 44 62 chr15 29385089 29385202 -71995319 - MIR3 SINE MIR -87 121 11 1205 216 52 3 chr15 29385713 29386000 -71994521 - L1ME1 LINE L1 -83 6083 5783 740 189 0 0 chr15 29386050 29386182 -71994339 - MER94 DNA DNA -2 132 1 211 309 39 15 chr15 29386340 29386429 -71994092 - MIR SINE MIR -56 152 63 504 320 13 13 chr15 29386479 29386629 -71993892 + MIR SINE MIR 2 151 -111 338 264 0 33 chr15 29386755 29386846 -71993675 + L1MC4 LINE L1 6616 6703 -1339 273 239 23 0 chr15 29386874 29386962 -71993559 + L1MC4 LINE L1 6614 6703 -1339 247 239 0 22 chr15 29386968 29387060 -71993461 + L1MC4 LINE L1 6614 6703 -1339 327 150 0 0 chr15 29387064 29387124 -71993397 + (TA)n Simple_repeat Simple_repeat 2 61 0 32 0 0 0 chr15 29387152 29387184 -71993337 + AT_rich Low_complexity Low_complexity 1 32 0 252 114 0 0 chr15 29387217 29387261 -71993260 - U5 snRNA snRNA -72 44 1 921 89 8 0 chr15 29387763 29387887 -71992634 - FLAM_C SINE Alu -8 125 1 241 291 148 5 chr15 29388810 29389020 -71991501 - L1ME4a LINE L1 -2 6119 5880 665 235 8 0 chr15 29389035 29389167 -71991354 + FLAM_A SINE Alu 1 133 0 2123 186 26 0 chr15 29389177 29389563 -71990958 + MSTD LTR MaLR 1 396 0 2513 70 3 0 chr15 29389890 29390192 -71990329 - AluY SINE Alu -8 303 1 182 224 119 30 chr15 29390531 29390598 -71989923 + MIR SINE MIR 46 118 -90 1777 152 42 3 chr15 29391023 29391306 -71989215 - AluSq SINE Alu -19 294 1 2403 184 42 60 chr15 29391920 29392279 -71988242 - L1MB7 LINE L1 -13 6171 5826 2218 98 0 10 chr15 29392279 29392576 -71987945 - AluSq SINE Alu -19 294 1 2403 184 42 60 chr15 29392576 29392818 -71987703 - L1MB7 LINE L1 -358 5826 5581 566 87 0 0 chr15 29392823 29392892 -71987629 - AluSg/x SINE Alu -49 260 192 656 185 25 115 chr15 29392906 29393106 -71987415 - L1MB7 LINE L1 -609 5575 5394 1193 156 37 66 chr15 29393244 29393487 -71987034 + MER46A DNA MER2_type 1 236 0 402 21 0 0 chr15 29393508 29393555 -71986966 + (TG)n Simple_repeat Simple_repeat 2 48 0 734 172 8 37 chr15 29393568 29393702 -71986819 - FLAM_C SINE Alu -12 131 2 2154 59 7 11 chr15 29393833 29394106 -71986415 - AluY SINE Alu -39 272 1 1966 135 7 0 chr15 29394220 29394502 -71986019 - AluJb SINE Alu -28 284 1 3556 121 18 2 chr15 29394828 29395317 -71985204 - LOR1a LTR ERV1 0 497 1 655 101 0 0 chr15 29395320 29395409 -71985112 - LOR1a-int LTR ERV1 -2 8118 8030 * 1769 111 0 26 chr15 29395408 29395435 -71985086 - LOR1-int LTR ERV1 -2056 6064 6038 8515 111 25 38 chr15 29395435 29396729 -71983792 + MER52C LTR ERV1 1 1278 0 1769 111 0 26 chr15 29396729 29396972 -71983549 - LOR1-int LTR ERV1 -2082 6038 5801 * 7407 99 55 31 chr15 29396962 29397090 -71983431 - LOR1-int LTR ERV1 -2596 5524 5400 2180 136 0 0 chr15 29397090 29397398 -71983123 + AluSx SINE Alu 1 308 -4 7407 99 55 31 chr15 29397398 29397507 -71983014 - LOR1-int LTR ERV1 -2720 5400 5295 2114 149 0 0 chr15 29397507 29397809 -71982712 + AluSx SINE Alu 1 302 -10 7407 99 55 31 chr15 29397809 29398274 -71982247 - LOR1-int LTR ERV1 -2825 5295 4842 2039 99 28 0 chr15 29398274 29398557 -71981964 - AluSx SINE Alu -21 291 1 7407 99 55 31 chr15 29398557 29399061 -71981460 - LOR1-int LTR ERV1 -3278 4842 4288 2593 50 0 0 chr15 29399178 29399477 -71981044 - AluY SINE Alu -12 299 1 960 223 45 35 chr15 29399873 29400315 -71980206 + L1MC5 LINE L1 7244 7598 -363 1828 168 73 48 chr15 29400321 29400388 -71980133 - L1ME1 LINE L1 -192 5974 5910 306 0 0 0 chr15 29400388 29400422 -71980099 + (TA)n Simple_repeat Simple_repeat 2 35 0 1828 168 73 48 chr15 29400422 29400795 -71979726 - L1ME1 LINE L1 -256 5910 5523 416 194 173 68 chr15 29400811 29400899 -71979622 + L1MC5 LINE L1 7649 7726 -235 2467 68 0 23 chr15 29400899 29401207 -71979314 + AluY SINE Alu 1 301 -10 416 194 173 68 chr15 29401207 29401355 -71979166 + L1MC5 LINE L1 7726 7910 -51 2159 112 0 3 chr15 29401356 29401660 -71978861 + AluY SINE Alu 1 303 -8 2736 32 0 0 chr15 29402171 29402481 -71978040 + AluY SINE Alu 2 311 0 2021 143 0 3 chr15 29402486 29402779 -71977742 + AluSx SINE Alu 1 292 -20 2017 158 0 0 chr15 29402804 29403115 -71977406 + AluJb SINE Alu 1 311 -1 431 164 0 0 chr15 29403167 29403240 -71977281 - Alu SINE Alu -3 308 236 190 300 0 0 chr15 29403699 29403749 -71976772 - L2 LINE L2 -2 3270 3221 228 296 14 120 chr15 29403786 29403928 -71976593 - MER5A DNA MER1_type -28 161 35 761 228 81 129 chr15 29404326 29404506 -71976015 + HAL1 LINE L1 1 159 -2348 2063 102 11 0 chr15 29404506 29404789 -71975732 + AluSx SINE Alu 4 289 -23 761 228 81 129 chr15 29404789 29404942 -71975579 + HAL1 LINE L1 159 318 -2189 38446 89 10 7 chr15 29404953 29411080 -71969441 + L1PA6 LINE L1 11 6154 0 742 277 204 10 chr15 29411090 29411242 -71969279 + HAL1 LINE L1 307 428 -2079 2236 125 0 0 chr15 29411242 29411545 -71968976 - AluSx SINE Alu -9 303 1 742 277 204 10 chr15 29411545 29411706 -71968815 + HAL1 LINE L1 428 681 -1826 480 81 0 0 chr15 29411711 29411785 -71968736 + (CA)n Simple_repeat Simple_repeat 2 75 0 367 217 59 20 chr15 29411832 29411948 -71968573 + L1ME1 LINE L1 6050 6184 0 737 230 209 24 chr15 29411956 29412330 -71968191 + HAL1 LINE L1 995 1437 -1070 515 198 144 0 chr15 29412399 29412510 -71968011 + HAL1 LINE L1 1540 1666 -841 502 239 130 24 chr15 29412530 29412777 -71967744 + HAL1 LINE L1 1721 1993 -514 * 2641 142 106 2 chr15 29412764 29412950 -71967571 + L1MDa LINE L1 1822 1987 -4553 206 61 0 30 chr15 29412950 29412983 -71967538 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2641 142 106 2 chr15 29412983 29413316 -71967205 + L1MDa LINE L1 1987 2395 -4145 1904 137 3 20 chr15 29413769 29414069 -71966452 + AluSx SINE Alu 5 299 -13 2123 131 0 0 chr15 29414619 29414917 -71965604 + AluSq SINE Alu 1 298 -15 1784 167 13 26 chr15 29415049 29415360 -71965161 + AluJo SINE Alu 1 307 -5 2296 126 39 39 chr15 29415448 29415812 -71964709 - THE1B LTR MaLR 0 364 1 2416 160 79 27 chr15 29415985 29416503 -71964018 + LTR10A LTR ERV1 1 545 -64 5209 120 21 12 chr15 29416518 29417328 -71963193 + LTR10A-int LTR ERV1 3 819 -5830 * 17012 167 28 37 chr15 29417323 29422734 -71957787 + LTR10A-int LTR ERV1 1396 6649 0 2304 175 95 12 chr15 29422734 29423237 -71957284 + LTR10A LTR ERV1 1 545 -64 322 281 60 90 chr15 29423409 29423670 -71956851 - MIR SINE MIR 0 262 8 1836 214 63 34 chr15 29423670 29424106 -71956415 + Charlie1b DNA MER1_type 5 459 -2302 2111 117 0 0 chr15 29424106 29424387 -71956134 + AluSc SINE Alu 13 293 -16 1836 214 63 34 chr15 29424387 29424454 -71956067 + Charlie1b DNA MER1_type 459 523 0 21 0 0 0 chr15 29424514 29424535 -71955986 + AT_rich Low_complexity Low_complexity 1 21 0 2003 92 67 11 chr15 29425478 29425761 -71954760 + AluSg SINE Alu 1 299 -11 1755 113 4 8 chr15 29425772 29426020 -71954501 + AluSx SINE Alu 52 298 -14 514 109 0 0 chr15 29426191 29426255 -71954266 + AluSq/x SINE Alu 88 151 -162 1876 124 34 0 chr15 29426256 29426523 -71953998 + AluSg SINE Alu 35 310 0 5130 112 38 30 chr15 29426523 29427346 -71953175 + L1PA15 LINE L1 5319 6147 -18 1808 169 0 16 chr15 29427347 29427654 -71952867 - AluJb SINE Alu -10 302 1 673 206 0 57 chr15 29428421 29428562 -71951959 - FLAM_A SINE Alu 0 133 1 2016 136 3 3 chr15 29428591 29428886 -71951635 + AluSx SINE Alu 1 295 -17 23 0 0 0 chr15 29429316 29429339 -71951182 + AT_rich Low_complexity Low_complexity 1 23 0 1090 218 13 21 chr15 29429718 29429957 -71950564 - AluJo SINE Alu -21 291 55 1345 198 61 27 chr15 29430164 29430457 -71950064 + AluJo SINE Alu 1 303 -9 529 226 139 83 chr15 29430495 29430796 -71949725 + L2 LINE L2 2996 3313 0 2095 110 13 13 chr15 29432067 29432368 -71948153 + AluJb SINE Alu 1 301 -11 35 54 0 0 chr15 29432935 29432991 -71947530 + AT_rich Low_complexity Low_complexity 1 56 0 2290 103 17 3 chr15 29433449 29433750 -71946771 + AluSx SINE Alu 1 305 -7 29 28 0 0 chr15 29433870 29433906 -71946615 + AT_rich Low_complexity Low_complexity 1 36 0 2371 71 3 59 chr15 29434324 29434648 -71945873 - AluY SINE Alu -5 306 1 2269 86 10 10 chr15 29434864 29435165 -71945356 - AluSq SINE Alu -12 301 1 2272 109 0 0 chr15 29435463 29435757 -71944764 + AluSq SINE Alu 1 294 -19 2160 101 7 3 chr15 29435759 29436055 -71944466 + AluSq SINE Alu 1 297 -16 1712 45 5 0 chr15 29437396 29437595 -71942926 - L1PA4 LINE L1 0 6155 5956 180 152 0 0 chr15 29438127 29438160 -71942361 + T-rich Low_complexity Low_complexity 1 33 0 361 243 0 0 chr15 29438170 29438240 -71942281 - FRAM/FAM SINE Alu -97 69 1 180 0 0 0 chr15 29438488 29438508 -71942013 + (T)n Simple_repeat Simple_repeat 1 20 0 2241 99 7 0 chr15 29439085 29439379 -71941142 - AluSq SINE Alu -17 296 1 806 182 52 19 chr15 29440525 29440679 -71939842 + FRAM SINE Alu 1 159 -17 2139 123 0 7 chr15 29441498 29441806 -71938715 - AluSg SINE Alu -4 306 1 965 173 9 28 chr15 29441889 29442103 -71938418 + L1MA3 LINE L1 6096 6305 0 248 115 49 49 chr15 29442257 29442318 -71938203 + L1MC/D LINE L1 5747 5807 -2001 2315 89 3 10 chr15 29442325 29442638 -71937883 + AluSp SINE Alu 1 311 -2 195 278 28 69 chr15 29443317 29443389 -71937132 + MIR SINE MIR 45 113 -95 668 287 139 35 chr15 29443717 29444264 -71936257 - L1MEd LINE L1 -5084 1035 432 293 133 56 100 chr15 29444459 29444549 -71935972 - L1MEd LINE L1 -5967 152 67 2055 129 4 0 chr15 29444634 29444912 -71935609 + AluSx SINE Alu 1 279 -33 288 0 0 0 chr15 29444912 29444944 -71935577 + (CA)n Simple_repeat Simple_repeat 1 32 0 682 153 0 9 chr15 29445231 29445342 -71935179 + AluSc SINE Alu 188 297 -12 340 282 43 43 chr15 29445464 29445581 -71934940 - L2 LINE L2 0 3272 3156 2288 95 3 3 chr15 29449290 29449585 -71930936 + AluSp SINE Alu 1 295 -18 2287 87 7 7 chr15 29449907 29450206 -71930315 + AluSc SINE Alu 1 299 -10 1708 106 109 4 chr15 29450675 29450940 -71929581 + AluSc SINE Alu 2 294 -15 2175 67 10 20 chr15 29450995 29451293 -71929228 - AluY SINE Alu -1 310 16 1338 54 12 12 chr15 29451396 29451563 -71928958 + AluSc SINE Alu 132 298 -11 227 125 0 0 chr15 29451566 29451598 -71928923 - Tigger5 DNA MER2_type -2290 33 2 264 226 0 0 chr15 29451871 29451933 -71928588 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 282 85 0 0 chr15 29451933 29451980 -71928541 - Alu SINE Alu 0 302 256 814 206 19 31 chr15 29451980 29452140 -71928381 + FAM SINE Alu 1 158 -17 2029 136 0 17 chr15 29452232 29452369 -71928152 + AluSx SINE Alu 1 139 -173 2175 102 20 3 chr15 29452369 29452662 -71927859 + AluSg SINE Alu 1 298 -12 2029 136 0 17 chr15 29452662 29452825 -71927696 + AluSx SINE Alu 139 296 -16 242 244 44 0 chr15 29452888 29452978 -71927543 + L1MC/D LINE L1 5744 5837 -1971 2325 83 0 3 chr15 29454278 29454579 -71925942 - AluSg SINE Alu -10 300 1 21 0 0 0 chr15 29454904 29454925 -71925596 + AT_rich Low_complexity Low_complexity 1 21 0 1725 106 0 4 chr15 29455004 29455231 -71925290 + AluSc SINE Alu 70 295 -14 233 185 19 0 chr15 29455305 29455359 -71925162 + LTR33 LTR ERVL 5 59 -462 521 268 56 20 chr15 29455489 29455687 -71924834 + LTR33 LTR ERVL 313 517 -4 2164 112 0 40 chr15 29455692 29456015 -71924506 - AluSx SINE Alu -2 310 1 316 272 67 25 chr15 29456209 29456448 -71924073 + L1MC5 LINE L1 7537 7785 -176 252 138 69 35 chr15 29456591 29456649 -71923872 + L1ME LINE L1 5731 5790 -331 1721 181 14 0 chr15 29456854 29457146 -71923375 - AluJo SINE Alu -14 298 3 1784 184 0 0 chr15 29457310 29457604 -71922917 + AluJo SINE Alu 6 299 -13 1228 109 18 123 chr15 29459534 29459819 -71920702 + MER75 DNA T2_type 5 259 -255 2162 101 0 24 chr15 29459921 29460219 -71920302 - AluSc SINE Alu -18 291 1 3231 135 40 47 chr15 29460219 29460413 -71920108 - L1MB2 LINE L1 -38 6133 5939 2166 122 0 0 chr15 29460413 29460701 -71919820 - AluSg SINE Alu -20 290 3 3231 135 40 47 chr15 29460701 29461149 -71919372 - L1MB2 LINE L1 -232 5939 5495 1605 203 10 13 chr15 29461150 29461460 -71919061 - AluJb SINE Alu -3 309 1 837 221 25 63 chr15 29461464 29461709 -71918812 - L1MB2 LINE L1 -819 5327 5095 2070 132 3 0 chr15 29461709 29462019 -71918502 - AluSx SINE Alu 0 312 2 837 221 25 63 chr15 29462019 29462089 -71918432 - L1MB2 LINE L1 -1051 5095 5024 2173 191 161 133 chr15 29462224 29463215 -71917306 + LTR28 LTR ERV1 1 1019 -1 2169 123 0 10 chr15 29463251 29463559 -71916962 - AluSx SINE Alu -7 305 1 2316 118 0 0 chr15 29463717 29464023 -71916498 - AluSq SINE Alu -7 306 1 909 193 114 31 chr15 29464341 29464595 -71915926 + ORSL DNA AcHobo 1 275 0 2144 114 3 7 chr15 29464794 29465102 -71915419 - AluSx SINE Alu -5 307 1 1910 118 76 0 chr15 29466107 29466396 -71914125 - AluSx SINE Alu -1 311 1 2103 119 3 0 chr15 29466746 29467039 -71913482 - AluSx SINE Alu -18 294 1 266 319 169 19 chr15 29467228 29467388 -71913133 + L3 LINE CR1 1323 1506 -71 6564 116 23 16 chr15 29467601 29467757 -71912764 - L1MA2 LINE L1 0 6304 6150 2283 80 7 10 chr15 29467757 29468059 -71912462 - AluSx SINE Alu -11 301 1 6564 116 23 16 chr15 29468059 29469141 -71911380 - L1MA2 LINE L1 -154 6150 5076 2007 150 0 6 chr15 29469141 29469454 -71911067 - AluJb SINE Alu -1 311 1 6564 116 23 16 chr15 29469454 29469541 -71910980 - L1MA2 LINE L1 -1228 5076 4991 2257 155 98 26 chr15 29469541 29469998 -71910523 + LTR2B LTR ERV1 1 490 0 6564 116 23 16 chr15 29469998 29470351 -71910170 - L1MA2 LINE L1 -1313 4991 4620 550 270 11 11 chr15 29470584 29470762 -71909759 - MER5B DNA MER1_type 0 178 1 686 287 33 29 chr15 29470941 29471185 -71909336 + MIR SINE MIR 6 250 -12 2269 98 17 0 chr15 29471193 29471489 -71909032 + AluSq SINE Alu 1 301 -12 252 300 154 89 chr15 29472788 29473171 -71907350 - L2 LINE L2 0 3272 2865 1625 120 74 35 chr15 29473283 29473567 -71906954 + AluJo SINE Alu 1 295 -17 1231 160 78 14 chr15 29474846 29475065 -71905456 - AluJo SINE Alu -74 238 6 4128 171 55 30 chr15 29475090 29476129 -71904392 - L1MB8 LINE L1 -6 6172 5070 2142 120 3 3 chr15 29476129 29476429 -71904092 - AluSx SINE Alu -12 300 1 4128 171 55 30 chr15 29476429 29477235 -71903286 - L1MB8 LINE L1 -1108 5070 4286 306 333 28 28 chr15 29477303 29477480 -71903041 + L2 LINE L2 2535 2711 -603 1695 121 114 0 chr15 29479011 29479283 -71901238 + AluSx SINE Alu 1 303 -9 1817 86 127 4 chr15 29479296 29479564 -71900957 + AluSp SINE Alu 1 301 -2 663 278 190 0 chr15 29479617 29479833 -71900688 + MIR SINE MIR 6 262 0 680 215 0 15 chr15 29481153 29481288 -71899233 + FLAM_C SINE Alu 1 133 0 2091 104 7 0 chr15 29483042 29483322 -71897199 + AluSx SINE Alu 1 282 -30 2144 119 3 0 chr15 29484079 29484374 -71896147 - AluSx SINE Alu -16 296 1 503 76 13 0 chr15 29534667 29534746 -71845775 - L1PB2 LINE L1 -7 6144 6065 500 282 63 41 chr15 29534749 29535065 -71845456 + L2 LINE L2 744 1066 -2248 367 313 0 0 chr15 29536013 29536109 -71844412 + MIR SINE MIR 164 259 -3 939 205 111 5 chr15 29536146 29536336 -71844185 - MIR SINE MIR -47 215 6 1926 167 0 0 chr15 29536362 29536650 -71843871 - AluJo SINE Alu -24 288 1 207 69 0 0 chr15 29536674 29536703 -71843818 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2356 98 3 0 chr15 29537352 29537657 -71842864 - AluY SINE Alu -5 306 1 25 0 0 0 chr15 29538631 29538656 -71841865 + AT_rich Low_complexity Low_complexity 1 25 0 245 258 55 55 chr15 29539290 29539418 -71841103 - L1MC5 LINE L1 -83 7878 7751 280 328 102 16 chr15 29539609 29539737 -71840784 + MIR3 SINE MIR 4 142 -66 303 202 60 24 chr15 29539958 29540042 -71840479 + L1PB4 LINE L1 5999 6085 -71 356 105 0 0 chr15 29540045 29540102 -71840419 + Alu SINE Alu 1 57 -246 1621 195 11 0 chr15 29541799 29542086 -71838435 + AluJo SINE Alu 1 290 -22 420 341 147 13 chr15 29542773 29543087 -71837434 - L2 LINE L2 -550 2764 2409 727 293 71 46 chr15 29544494 29544845 -71835676 + L2 LINE L2 2945 3304 -9 2330 87 0 3 chr15 29545172 29545471 -71835050 + AluSx SINE Alu 1 298 -14 1731 148 42 3 chr15 29545486 29545769 -71834752 + AluJo SINE Alu 5 298 -14 2600 124 39 10 chr15 29545927 29546337 -71834184 + L1MA7 LINE L1 5865 6286 -5 2475 49 0 0 chr15 29546385 29546672 -71833849 - AluY SINE Alu -24 287 1 2081 99 10 10 chr15 29547421 29547713 -71832808 - AluSx SINE Alu -20 292 1 285 39 118 39 chr15 29547881 29547932 -71832589 - L1M1 LINE L1 -869 5436 5382 * 1986 73 39 0 chr15 29547918 29548178 -71832343 + L1P4 LINE L1 5437 5706 -460 1878 196 87 26 chr15 29548184 29548955 -71831566 + LTR28 LTR ERV1 54 941 -79 363 259 37 52 chr15 29548990 29549125 -71831396 + LTR27 LTR ERV1 502 634 -2 837 132 0 0 chr15 29549129 29549250 -71831271 + L1PA16 LINE L1 6042 6162 -4 1545 161 44 11 chr15 29549252 29549525 -71830996 + AluJo SINE Alu 1 282 -30 1222 196 178 124 chr15 29549870 29550946 -71829575 + L1MC5 LINE L1 6779 7911 -50 2483 55 0 3 chr15 29551029 29551319 -71829202 + AluY SINE Alu 1 289 -22 370 329 109 62 chr15 29551353 29551663 -71828858 - L2 LINE L2 0 3313 2970 826 240 77 5 chr15 29551663 29551859 -71828662 + MER63A DNA MER1_type 1 210 0 370 329 109 62 chr15 29551859 29552034 -71828487 - L2 LINE L2 -343 2970 2805 198 0 0 0 chr15 29552123 29552145 -71828376 + (T)n Simple_repeat Simple_repeat 1 22 0 641 249 133 28 chr15 29552166 29552518 -71828003 + L1MEc LINE L1 2184 2538 -3677 1772 151 36 0 chr15 29552568 29552846 -71827675 - AluJo SINE Alu -24 288 1 335 347 104 19 chr15 29552953 29553328 -71827193 - L1MCa LINE L1 -4063 2544 2138 867 166 80 0 chr15 29553531 29553682 -71826839 - MER20 DNA MER1_type -3 216 54 753 189 0 0 chr15 29553682 29553804 -71826717 + FLAM_C SINE Alu 2 123 -20 357 208 108 8 chr15 29553831 29553984 -71826537 - L1MCa LINE L1 -971 1816 1407 2270 113 0 3 chr15 29554959 29555270 -71825251 - AluSx SINE Alu 0 312 3 1753 201 53 84 chr15 29555706 29556250 -71824271 - L1MC5 LINE L1 -458 7503 6977 1314 146 176 42 chr15 29556250 29556511 -71824010 - AluJo SINE Alu -5 297 2 1753 201 53 84 chr15 29556511 29556552 -71823969 - L1MC5 LINE L1 -984 6977 6936 1718 111 103 109 chr15 29556564 29556635 -71823886 - THE1C LTR MaLR 0 375 305 2104 148 0 0 chr15 29556635 29556945 -71823576 + AluSx SINE Alu 1 310 -2 1718 111 103 109 chr15 29556945 29557250 -71823271 - THE1C LTR MaLR -70 305 1 794 286 35 48 chr15 29557263 29557658 -71822863 - L1M4 LINE L1 -2220 3926 3537 243 0 0 0 chr15 29557717 29557744 -71822777 + (CA)n Simple_repeat Simple_repeat 2 28 0 2131 109 16 10 chr15 29558080 29558384 -71822137 - AluSg SINE Alu -2 308 3 2077 147 0 0 chr15 29559183 29559495 -71821026 + AluSx SINE Alu 1 312 0 250 226 38 0 chr15 29559552 29559605 -71820916 - L2 LINE L2 -3 3310 3256 322 284 68 81 chr15 29559883 29560520 -71820001 + L1ME4a LINE L1 5375 6036 -85 2286 84 7 0 chr15 29560647 29560943 -71819578 + AluY SINE Alu 1 298 -13 3161 178 30 2 chr15 29561682 29562256 -71818265 + L1MB4 LINE L1 5590 6179 -1 746 169 118 6 chr15 29562737 29562915 -71817606 + Charlie4 DNA MER1_type 36 233 -1728 1549 181 14 11 chr15 29563267 29563548 -71816973 + AluJo SINE Alu 1 282 -30 208 238 75 38 chr15 29563726 29563806 -71816715 - MIR3 SINE MIR -7 201 119 2120 106 3 0 chr15 29564259 29564586 -71815935 + AluSx SINE Alu 1 328 0 2024 145 0 3 chr15 29564824 29565135 -71815386 + AluSx SINE Alu 3 312 0 765 169 0 31 chr15 29565370 29565487 -71815034 + AluJo/FLAM SINE Alu 5 119 -183 1976 169 0 0 chr15 29565487 29565789 -71814732 - AluJb SINE Alu -10 302 1 765 169 0 31 chr15 29565789 29565801 -71814720 + AluJo/FLAM SINE Alu 119 130 -172 2357 75 0 0 chr15 29565822 29566114 -71814407 + AluY SINE Alu 20 311 0 201 226 102 95 chr15 29567102 29567239 -71813282 - MIR SINE MIR -62 200 63 683 235 70 0 chr15 29567468 29567655 -71812866 + MIR SINE MIR 63 262 0 220 279 15 15 chr15 29568246 29568314 -71812207 + MER5A DNA MER1_type 117 184 -5 2347 86 0 29 chr15 29569166 29569480 -71811041 + AluSx SINE Alu 5 309 -3 819 185 0 0 chr15 29569494 29569624 -71810897 + FLAM_A SINE Alu 13 142 0 2501 65 7 3 chr15 29570105 29570413 -71810108 + AluSp SINE Alu 1 309 -4 1966 106 3 25 chr15 29570733 29571016 -71809505 + AluY SINE Alu 1 277 -34 2256 115 0 0 chr15 29571128 29571432 -71809089 + AluSx SINE Alu 7 310 -2 2059 137 19 0 chr15 29571806 29572121 -71808400 + L1MA4 LINE L1 5699 6019 -281 23 0 0 0 chr15 29572207 29572230 -71808291 + AT_rich Low_complexity Low_complexity 1 23 0 2057 88 33 4 chr15 29572240 29572565 -71807956 + AluY SINE Alu 1 333 0 185 348 67 0 chr15 29572656 29572745 -71807776 - MIR SINE MIR -118 144 50 2971 205 49 31 chr15 29573034 29573710 -71806811 + L1ME2 LINE L1 5431 6122 -42 2086 109 34 0 chr15 29573710 29574004 -71806517 + AluSp SINE Alu 2 305 -8 2971 205 49 31 chr15 29574004 29574038 -71806483 + L1ME2 LINE L1 6122 6154 -10 2418 99 0 3 chr15 29574301 29574614 -71805907 + AluSx SINE Alu 1 312 0 1531 227 130 19 chr15 29574663 29574921 -71805600 + L1MB7 LINE L1 5174 5402 -782 2326 125 12 18 chr15 29574921 29575256 -71805265 + MER1B DNA MER1_type 5 337 0 1531 227 130 19 chr15 29575256 29575276 -71805245 + L1MB7 LINE L1 5402 5418 -766 1627 171 43 7 chr15 29575276 29575556 -71804965 + AluJb SINE Alu 3 292 -20 1531 227 130 19 chr15 29575556 29575948 -71804573 + L1MB7 LINE L1 5418 5902 -282 22 0 0 0 chr15 29576213 29576235 -71804286 + AT_rich Low_complexity Low_complexity 1 22 0 1116 212 113 3 chr15 29576427 29576719 -71803802 - MER5C DNA MER1_type 0 324 1 26 0 0 0 chr15 29577226 29577252 -71803269 + AT_rich Low_complexity Low_complexity 1 26 0 296 224 224 0 chr15 29577360 29577458 -71803063 - L2 LINE L2 0 3272 3153 1401 143 0 59 chr15 29578289 29578527 -71801994 - AluJb SINE Alu -4 308 85 388 302 24 8 chr15 29578584 29578710 -71801811 + MIR SINE MIR 3 130 -132 2133 108 24 0 chr15 29578990 29579277 -71801244 + AluSg SINE Alu 1 294 -16 263 296 0 0 chr15 29579994 29580065 -71800456 - HsTC2 DNA Tc2 -1827 71 1 1850 133 0 70 chr15 29580202 29580518 -71800003 + AluJo SINE Alu 1 294 -18 386 305 146 26 chr15 29580743 29580894 -71799627 + MER91A DNA MER1_type 1 169 -27 572 165 0 0 chr15 29581340 29581419 -71799102 + AluJ/FLAM SINE Alu 2 80 -232 639 237 118 65 chr15 29581428 29581921 -71798600 - L1MC5 LINE L1 -55 7906 7388 1990 150 20 0 chr15 29581996 29582302 -71798219 + AluJb SINE Alu 1 312 0 1555 104 0 5 chr15 29582449 29582683 -71797838 + AluSc SINE Alu 83 315 0 1704 111 126 4 chr15 29582785 29583046 -71797475 - AluSx SINE Alu -19 293 1 197 211 35 35 chr15 29583050 29583107 -71797414 - MER5B DNA MER1_type -120 58 2 183 254 60 15 chr15 29583259 29583326 -71797195 - L2 LINE L2 -94 3219 3150 258 325 77 34 chr15 29583958 29584075 -71796446 + L2 LINE L2 3141 3262 -10 2122 124 7 0 chr15 29584108 29584415 -71796106 + AluSx SINE Alu 1 309 -3 425 283 133 8 chr15 29584502 29584622 -71795899 + MIR3 SINE MIR 3 137 -71 1355 113 0 10 chr15 29584823 29585017 -71795504 - AluSg/x SINE Alu 0 312 121 2104 148 32 11 chr15 29585143 29585488 -71795033 + L1MB2 LINE L1 5785 6140 -31 2097 135 6 6 chr15 29585488 29585800 -71794721 - AluSx SINE Alu 0 312 1 2104 148 32 11 chr15 29585800 29585833 -71794688 + L1MB2 LINE L1 6140 6171 0 2108 105 28 3 chr15 29585939 29586224 -71794297 + AluSx SINE Alu 3 294 -18 36839 98 14 14 chr15 29586421 29592571 -71787950 - L1PA7 LINE L1 0 6154 11 24 0 0 0 chr15 29592714 29592738 -71787783 + AT_rich Low_complexity Low_complexity 1 24 0 2107 128 3 0 chr15 29592738 29593028 -71787493 - AluSx SINE Alu -21 291 1 1561 192 7 17 chr15 29593035 29593327 -71787194 - AluJb SINE Alu -23 289 1 1925 108 0 78 chr15 29593673 29593979 -71786542 - AluSg SINE Alu -28 282 1 1310 220 45 14 chr15 29593988 29594279 -71786242 - AluJo SINE Alu -12 300 1 1153 264 125 70 chr15 29594701 29595565 -71784956 + L2 LINE L2 2392 3313 0 2307 80 33 3 chr15 29595594 29595893 -71784628 + AluSg SINE Alu 1 308 -2 693 302 150 39 chr15 29595934 29596118 -71784403 + L2 LINE L2 2512 2674 -639 1478 186 34 28 chr15 29596118 29596409 -71784112 + AluJb SINE Alu 1 293 -19 693 302 150 39 chr15 29596409 29596795 -71783726 + L2 LINE L2 2674 3182 -131 2276 116 0 0 chr15 29596795 29597105 -71783416 - AluSq SINE Alu -3 310 1 693 302 150 39 chr15 29597105 29597253 -71783268 + L2 LINE L2 3182 3312 -1 278 289 63 42 chr15 29597266 29597408 -71783113 + MER5A DNA MER1_type 45 189 0 273 57 0 0 chr15 29597426 29597461 -71783060 + (TGAG)n Simple_repeat Simple_repeat 1 35 0 1221 209 8 4 chr15 29597461 29597695 -71782826 - AluJo SINE Alu -77 235 1 286 269 19 19 chr15 29597818 29597922 -71782599 - MER103 DNA DNA -19 147 44 28 61 0 0 chr15 29598190 29598239 -71782282 + AT_rich Low_complexity Low_complexity 1 49 0 2148 96 4 4 chr15 29598349 29598658 -71781863 - AluSc SINE Alu 0 309 1 4319 119 8 37 chr15 29598875 29599596 -71780925 - L1MA5A LINE L1 -56 6241 5542 2130 102 3 0 chr15 29600806 29601133 -71779388 - AluSx SINE Alu 0 328 1 293 222 111 60 chr15 29601498 29601615 -71778906 - MIR SINE MIR -3 259 137 307 247 25 0 chr15 29601615 29601696 -71778825 + HAL1 LINE L1 1777 1859 -648 284 326 27 34 chr15 29601704 29601851 -71778670 + MIR SINE MIR 9 154 -108 2217 118 0 3 chr15 29602164 29602461 -71778060 + AluSp SINE Alu 1 296 -17 195 354 49 12 chr15 29602610 29602692 -71777829 - L2 LINE L2 -49 3223 3139 728 230 168 7 chr15 29603561 29603865 -71776656 - MER113 DNA MER1_type? -163 358 6 289 288 166 14 chr15 29603893 29604032 -71776489 - MIR SINE MIR -83 179 20 295 228 38 51 chr15 29604465 29604544 -71775977 - L2 LINE L2 -4 3309 3232 2116 104 0 0 chr15 29604657 29604962 -71775559 + AluSg SINE Alu 15 310 0 401 289 39 23 chr15 29605816 29605944 -71774577 - L2 LINE L2 -4 3268 3139 248 306 276 17 chr15 29606233 29606465 -71774056 - L2 LINE L2 -497 2817 2526 1403 174 48 37 chr15 29606962 29607256 -71773265 + AluJb SINE Alu 1 297 -15 1899 92 88 4 chr15 29607410 29607683 -71772838 - AluSq SINE Alu -17 296 1 754 66 0 0 chr15 29608146 29608237 -71772284 + AluS SINE Alu 2 92 -220 2041 106 4 0 chr15 29608851 29609115 -71771406 + AluSq SINE Alu 1 265 -48 1760 167 3 27 chr15 29609115 29609415 -71771106 + AluJo SINE Alu 10 302 -10 438 169 49 78 chr15 29609818 29609960 -71770561 - L1MD2 LINE L1 -409 5950 5813 * 3361 178 77 36 chr15 29609954 29609994 -71770527 - L1MB7 LINE L1 0 6184 6147 2037 143 97 30 chr15 29609994 29610365 -71770156 + MSTD LTR MaLR 1 396 0 3361 178 77 36 chr15 29610365 29611105 -71769416 - L1MB7 LINE L1 -37 6147 5372 485 299 143 29 chr15 29611500 29611885 -71768636 - HAL1 LINE L1 -966 1541 1113 495 239 34 86 chr15 29611910 29612119 -71768402 - L2 LINE L2 0 3313 3116 2268 86 3 13 chr15 29612194 29612495 -71768026 - AluY SINE Alu -13 298 1 923 239 50 41 chr15 29613300 29613618 -71766903 + L1ME1 LINE L1 5845 6165 -1 601 189 94 47 chr15 29613917 29614044 -71766477 - FLAM_C SINE Alu 0 133 1 25 31 0 0 chr15 29614517 29614549 -71765972 + AT_rich Low_complexity Low_complexity 1 32 0 2147 130 0 13 chr15 29614776 29615083 -71765438 + AluSx SINE Alu 1 303 -9 419 312 147 6 chr15 29615353 29615510 -71765011 + MIR SINE MIR 14 192 -70 22 94 0 0 chr15 29615719 29615783 -71764738 + AT_rich Low_complexity Low_complexity 1 64 0 1120 133 152 38 chr15 29616437 29616606 -71763915 - AluJb SINE Alu -17 295 96 234 0 0 0 chr15 29616606 29616632 -71763889 + (TG)n Simple_repeat Simple_repeat 2 27 0 1120 133 152 38 chr15 29616632 29616672 -71763849 - AluJb SINE Alu -216 96 62 238 94 0 0 chr15 29616692 29616724 -71763797 - Alu SINE Alu -206 96 65 198 0 0 0 chr15 29616724 29616746 -71763775 + (TG)n Simple_repeat Simple_repeat 2 23 0 260 86 0 0 chr15 29616751 29616786 -71763735 - AluJ/FLAM SINE Alu -206 96 62 238 94 0 0 chr15 29616802 29616834 -71763687 - Alu SINE Alu -37 96 65 216 0 0 0 chr15 29616834 29616858 -71763663 + (TG)n Simple_repeat Simple_repeat 2 25 0 238 94 0 0 chr15 29616863 29616895 -71763626 - Alu SINE Alu -206 96 65 246 62 0 0 chr15 29616895 29616927 -71763594 + (TG)n Simple_repeat Simple_repeat 2 33 0 366 23 0 0 chr15 29616965 29617008 -71763513 + (TG)n Simple_repeat Simple_repeat 2 44 0 238 94 0 0 chr15 29617013 29617045 -71763476 - Alu SINE Alu -206 96 65 216 0 0 0 chr15 29617045 29617069 -71763452 + (TG)n Simple_repeat Simple_repeat 2 25 0 245 91 0 0 chr15 29617074 29617107 -71763414 - Alu SINE Alu -38 95 63 270 0 0 0 chr15 29617108 29617138 -71763383 + (TG)n Simple_repeat Simple_repeat 2 31 0 238 94 0 0 chr15 29617143 29617175 -71763346 - Alu SINE Alu -37 96 65 450 0 0 0 chr15 29617175 29617225 -71763296 + (TG)n Simple_repeat Simple_repeat 2 51 0 630 158 0 0 chr15 29617229 29617324 -71763197 - AluJ/FLAM SINE Alu -216 96 2 31 26 0 0 chr15 29617711 29617749 -71762772 + AT_rich Low_complexity Low_complexity 1 38 0 259 287 189 6 chr15 29617968 29618132 -71762389 + MIR SINE MIR 6 199 -63 465 281 69 26 chr15 29618412 29618662 -71761859 - MIR SINE MIR -13 249 18 278 229 153 70 chr15 29618780 29618937 -71761584 - L2 LINE L2 -18 3295 3126 13882 109 31 96 chr15 29619068 29620232 -71760289 + Tigger1 DNA MER2_type 1 1239 -1179 710 201 15 22 chr15 29620232 29620366 -71760155 + FLAM_A SINE Alu 1 133 0 13882 109 31 96 chr15 29620366 29620456 -71760065 + Tigger1 DNA MER2_type 1239 1333 -1085 2289 97 7 3 chr15 29620456 29620754 -71759767 - AluSx SINE Alu -13 299 1 13882 109 31 96 chr15 29620754 29621135 -71759386 + Tigger1 DNA MER2_type 1333 1737 -681 734 81 20 10 chr15 29621135 29621234 -71759287 + HY3 scRNA scRNA 1 100 -1 13882 109 31 96 chr15 29621234 29621848 -71758673 + Tigger1 DNA MER2_type 1737 2389 -29 828 178 0 37 chr15 29621848 29621983 -71758538 + FLAM_A SINE Alu 1 130 -12 13882 109 31 96 chr15 29621983 29622111 -71758410 + Tigger1 DNA MER2_type 2389 2348 -70 1598 97 198 0 chr15 29622111 29622374 -71758147 + AluY SINE Alu 1 310 0 13882 109 31 96 chr15 29622374 29622442 -71758079 + Tigger1 DNA MER2_type 2347 2418 0 2210 117 3 0 chr15 29623829 29624137 -71756384 + AluSx SINE Alu 1 309 -3 1754 105 0 39 chr15 29625538 29625795 -71754726 - AluSx SINE Alu -10 302 56 2110 134 7 3 chr15 29625938 29626243 -71754278 + AluSq SINE Alu 1 306 -7 21 57 0 0 chr15 29630031 29630066 -71750455 + GC_rich Low_complexity Low_complexity 1 35 0 2151 108 0 19 chr15 29630581 29630896 -71749625 + AluSq SINE Alu 1 309 -4 655 141 8 6 chr15 29632425 29632668 -71747853 + AluJ SINE Alu 1 297 -15 2264 105 0 0 chr15 29632815 29633111 -71747410 + AluSq SINE Alu 1 296 -17 2119 135 0 10 chr15 29633117 29633420 -71747101 + AluSx SINE Alu 1 300 -12 197 281 219 31 chr15 29633464 29633560 -71746961 - MIR SINE MIR -77 131 18 1948 119 46 16 chr15 29634405 29634510 -71746011 + AluJb SINE Alu 1 101 -211 185 56 0 56 chr15 29634510 29634546 -71745975 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1948 119 46 16 chr15 29634546 29634743 -71745778 + AluJb SINE Alu 101 312 0 1150 122 6 11 chr15 29634873 29635054 -71745467 - AluSx SINE Alu -132 180 1 225 315 37 9 chr15 29635977 29636085 -71744436 + L1ME LINE L1 5625 5735 -386 1909 93 72 7 chr15 29636150 29636428 -71744093 + AluSq SINE Alu 1 296 -17 2411 64 27 0 chr15 29636438 29636735 -71743786 + AluSg SINE Alu 1 305 -5 2408 65 0 3 chr15 29636943 29637235 -71743286 + AluY SINE Alu 1 291 -20 428 89 0 0 chr15 29638808 29638864 -71741657 + Alu SINE Alu 2 57 -261 187 316 0 0 chr15 29639037 29639094 -71741427 + L2 LINE L2 3234 3290 -23 2199 123 0 3 chr15 29639785 29640093 -71740428 + AluSx SINE Alu 1 307 -5 777 171 0 0 chr15 29640325 29640442 -71740079 + AluJo/FLAM SINE Alu 5 121 -191 1518 172 0 0 chr15 29640442 29640680 -71739841 - AluJb SINE Alu -11 301 64 2371 85 0 7 chr15 29640783 29641088 -71739433 - AluSg SINE Alu -7 303 1 1723 166 10 10 chr15 29641109 29641398 -71739123 - AluJb SINE Alu -23 289 1 188 245 28 147 chr15 29641926 29642069 -71738452 + MIR3 SINE MIR 42 167 -41 1737 189 0 38 chr15 29645986 29646299 -71734222 - AluJb SINE Alu -11 301 1 357 256 0 11 chr15 29646494 29646584 -71733937 + L3b LINE CR1 1252 1340 -243 30 77 0 0 chr15 29646820 29646885 -71733636 + AT_rich Low_complexity Low_complexity 1 65 0 195 42 0 0 chr15 29649597 29649621 -71730900 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2262 90 4 0 chr15 29649623 29649902 -71730619 - AluSx SINE Alu -32 280 1 226 254 8 68 chr15 29649943 29650061 -71730460 + CT-rich Low_complexity Low_complexity 2 112 0 2346 70 0 88 chr15 29652315 29652657 -71727864 - AluSp SINE Alu -1 312 1 213 39 0 0 chr15 29654514 29654540 -71725981 + (CCCCCG)n Simple_repeat Simple_repeat 1 26 0 25 102 0 0 chr15 29655081 29655169 -71725352 + GC_rich Low_complexity Low_complexity 1 88 0 22 0 0 0 chr15 29655225 29655247 -71725274 + GC_rich Low_complexity Low_complexity 1 22 0 786 177 0 8 chr15 29656284 29656414 -71724107 - FLAM_C SINE Alu -4 129 1 426 20 0 0 chr15 29656517 29656568 -71723953 + (TG)n Simple_repeat Simple_repeat 2 52 0 2242 106 0 20 chr15 29656569 29656872 -71723649 - AluSg SINE Alu -12 298 2 2223 87 16 42 chr15 29656874 29657184 -71723337 - AluSq SINE Alu -11 302 1 2024 169 82 67 chr15 29657294 29657340 -71723181 - LTR49 LTR ERV1 -48 739 695 2305 84 3 50 chr15 29657340 29657660 -71722861 - AluSx SINE Alu -7 305 1 2024 169 82 67 chr15 29657660 29658122 -71722399 - LTR49 LTR ERV1 -92 695 1 665 199 15 11 chr15 29658642 29658913 -71721608 + CT-rich Low_complexity Low_complexity 1 272 0 739 151 20 12 chr15 29658934 29659188 -71721333 + CT-rich Low_complexity Low_complexity 1 256 0 651 140 79 26 chr15 29659188 29659302 -71721219 - FLAM_C SINE Alu -15 128 9 25 0 0 0 chr15 29659315 29659340 -71721181 + AT_rich Low_complexity Low_complexity 1 25 0 858 167 0 0 chr15 29659341 29659473 -71721048 - FLAM_C SINE Alu -5 138 7 904 149 0 36 chr15 29659491 29659659 -71720862 + MLT1A1 LTR MaLR 1 162 -212 510 125 0 0 chr15 29659659 29659739 -71720782 + (GA)n Simple_repeat Simple_repeat 1 80 0 1083 165 11 5 chr15 29659770 29659958 -71720563 + MLT1A1 LTR MaLR 177 365 0 2002 166 0 3 chr15 29660317 29660630 -71719891 + AluJb SINE Alu 1 312 0 1800 169 3 43 chr15 29660836 29661161 -71719360 + AluJb SINE Alu 1 312 0 22 35 0 0 chr15 29662680 29662709 -71717812 + AT_rich Low_complexity Low_complexity 1 29 0 1764 179 53 62 chr15 29662829 29663092 -71717429 + MER4D LTR ERV1 1 265 -638 183 80 0 0 chr15 29663092 29663117 -71717404 + (TA)n Simple_repeat Simple_repeat 1 25 0 1764 179 53 62 chr15 29663117 29663158 -71717363 + MER4D LTR ERV1 265 305 -598 2155 136 0 0 chr15 29663158 29663452 -71717069 - AluSc SINE Alu -15 294 1 1764 179 53 62 chr15 29663452 29663474 -71717047 + MER4D LTR ERV1 305 326 -577 464 0 18 0 chr15 29663474 29663530 -71716991 + (TA)n Simple_repeat Simple_repeat 1 57 0 279 0 0 0 chr15 29663531 29663562 -71716959 + (TG)n Simple_repeat Simple_repeat 2 32 0 1838 177 21 0 chr15 29663565 29663847 -71716674 - AluSx SINE Alu -24 288 1 1764 179 53 62 chr15 29663847 29663981 -71716540 + MER4D LTR ERV1 328 465 -438 1408 176 114 70 chr15 29663982 29664413 -71716108 + LTR7 LTR ERV1 1 450 0 2603 142 9 24 chr15 29664413 29664879 -71715642 + HERVH LTR ERV1 1 459 -7254 13149 136 6 22 chr15 29664933 29667173 -71713348 + HERVH LTR ERV1 793 2995 -4718 5558 111 8 2 chr15 29667152 29668007 -71712514 + HERVH LTR ERV1 3140 3999 -3714 * 4968 114 25 1 chr15 29668068 29668824 -71711697 + HERVH LTR ERV1 3995 4768 -2945 2638 103 7 12 chr15 29668822 29669238 -71711283 + HERVH LTR ERV1 7300 7713 0 * 1249 184 106 61 chr15 29669238 29669662 -71710859 + LTR7 LTR ERV1 1 443 -7 1886 130 35 130 chr15 29669676 29670137 -71710384 + MER4D LTR ERV1 487 903 0 4128 134 14 2 chr15 29670234 29670859 -71709662 + MER41B LTR ERV1 1 633 -2 4378 107 32 33 chr15 29670863 29671582 -71708939 + MER41B-int LTR ERV1 4 721 -5225 335 203 32 49 chr15 29671586 29671674 -71708847 + MER41B LTR ERV1 428 515 -120 2340 97 7 3 chr15 29671674 29671974 -71708547 - AluSq SINE Alu -8 305 5 335 203 32 49 chr15 29671974 29672008 -71708513 + MER41B LTR ERV1 515 548 -87 29 0 0 0 chr15 29672521 29672550 -71707971 + AT_rich Low_complexity Low_complexity 1 29 0 271 78 39 0 chr15 29675074 29675125 -71705396 + C-rich Low_complexity Low_complexity 42 94 0 198 214 24 0 chr15 29675898 29675940 -71704581 - MIR SINE MIR -62 146 103 222 235 39 0 chr15 29676438 29676489 -71704032 - MIR SINE MIR -61 147 95 433 212 130 53 chr15 29677484 29677653 -71702868 - MIR SINE MIR -59 149 16 216 0 0 0 chr15 29677839 29677863 -71702658 + (CA)n Simple_repeat Simple_repeat 2 25 0 358 226 78 26 chr15 29679257 29679372 -71701149 - L2 LINE L2 -5 3308 3188 327 331 119 0 chr15 29679379 29679530 -71700991 - MIR3 SINE MIR -9 199 31 382 313 62 6 chr15 29680433 29680609 -71699912 - MIR SINE MIR -29 233 48 1974 101 31 7 chr15 29680611 29680899 -71699622 - AluY SINE Alu -16 295 1 521 93 0 13 chr15 29683601 29683676 -71696845 + AluS SINE Alu 2 75 -237 2193 128 0 6 chr15 29684322 29684634 -71695887 + AluSx SINE Alu 1 310 -2 382 295 93 39 chr15 29684712 29684841 -71695680 - L2 LINE L2 -15 3257 3122 328 224 47 0 chr15 29685038 29685123 -71695398 - MIR SINE MIR -114 148 60 284 283 133 17 chr15 29685392 29685512 -71695009 + L2 LINE L2 3180 3313 0 594 264 65 20 chr15 29685598 29685799 -71694722 - MER82 DNA MER2_type 0 653 444 328 311 52 27 chr15 29685835 29686027 -71694494 + MIR SINE MIR 4 202 -57 302 316 0 11 chr15 29686046 29686141 -71694380 - MER82 DNA MER2_type -559 94 1 201 292 15 0 chr15 29686419 29686484 -71694037 + L2 LINE L2 3158 3223 -90 744 183 0 0 chr15 29686782 29686897 -71693624 - FLAM_A SINE Alu -18 115 1 307 91 0 0 chr15 29688680 29688724 -71691797 + Alu SINE Alu 1 44 -257 203 171 0 0 chr15 29688807 29688848 -71691673 + T-rich Low_complexity Low_complexity 5 45 0 365 301 115 50 chr15 29689080 29689855 -71690666 - L1MEd LINE L1 -3193 2936 2112 268 279 84 63 chr15 29689914 29690122 -71690399 - L1MEd LINE L1 -4974 1145 930 1343 163 32 112 chr15 29690122 29690460 -71690061 - AluJb SINE Alu -1 311 1 268 279 84 63 chr15 29690460 29690488 -71690033 - L1MEd LINE L1 -5189 930 904 358 320 85 29 chr15 29690564 29690870 -71689651 - L1MEd LINE L1 -5236 883 561 576 224 135 13 chr15 29691424 29691580 -71688941 + MIR SINE MIR 24 198 -64 2011 135 6 22 chr15 29693384 29693702 -71686819 - AluSq SINE Alu 0 313 1 393 289 59 90 chr15 29694255 29694495 -71686026 - L1ME3A LINE L1 -10 6160 5939 1233 202 0 13 chr15 29694519 29694757 -71685764 - MER106A DNA MER1_type -1 235 1 698 243 108 21 chr15 29694768 29695126 -71685395 - L1ME3A LINE L1 -218 5952 5535 222 37 0 0 chr15 29695709 29695736 -71684785 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 631 188 0 81 chr15 29695739 29695888 -71684633 - AluJb SINE Alu -30 282 146 294 299 68 68 chr15 29696658 29696835 -71683686 + MIR SINE MIR 71 247 -15 21 36 0 0 chr15 29696971 29696999 -71683522 + AT_rich Low_complexity Low_complexity 1 28 0 256 291 23 23 chr15 29697231 29697317 -71683204 - MIR SINE MIR -70 192 107 1612 174 0 7 chr15 29697663 29697951 -71682570 + AluJo SINE Alu 1 286 -26 1139 178 0 10 chr15 29698509 29698717 -71681804 - AluSg/x SINE Alu -13 297 92 311 315 98 39 chr15 29698959 29699162 -71681359 + HAL1 LINE L1 2255 2469 -38 2130 115 0 7 chr15 29699407 29699711 -71680810 + AluSx SINE Alu 1 302 -10 193 129 60 35 chr15 29701344 29701460 -71679061 + (CA)n Simple_repeat Simple_repeat 1 119 0 235 150 24 63 chr15 29701471 29701598 -71678923 + (CACAC)n Simple_repeat Simple_repeat 5 126 0 249 215 47 19 chr15 29701617 29701724 -71678797 + (CA)n Simple_repeat Simple_repeat 1 110 0 181 230 27 0 chr15 29702206 29702280 -71678241 + C-rich Low_complexity Low_complexity 3 78 0 283 254 92 2 chr15 29702510 29702630 -71677891 - L1ME LINE L1 -363 5799 5668 336 24 0 0 chr15 29704599 29704640 -71675881 + (TG)n Simple_repeat Simple_repeat 2 42 0 2113 120 3 0 chr15 29705201 29705501 -71675020 - AluSx SINE Alu -11 301 1 2308 138 37 0 chr15 29706012 29706395 -71674126 + L1MB3 LINE L1 5787 6183 0 1236 139 15 105 chr15 29706512 29706779 -71673742 - MSTB LTR MaLR -183 243 1 2029 164 31 10 chr15 29708242 29708625 -71671896 - L1MB5 LINE L1 -1 6173 5783 548 126 11 0 chr15 29708626 29708713 -71671808 - AluSg/x SINE Alu -6 306 219 546 213 0 0 chr15 29708721 29708829 -71671692 - L1MB5 LINE L1 -389 5785 5678 620 227 142 98 chr15 29708864 29709384 -71671137 - MLT1H1 LTR MaLR 0 555 19 232 220 131 42 chr15 29709411 29709625 -71670896 - HAL1 LINE L1 -1449 1058 826 1876 141 7 3 chr15 29709694 29710011 -71670510 + AluJo SINE Alu 1 312 0 242 296 66 84 chr15 29710298 29710632 -71669889 - HAL1 LINE L1 -2170 337 10 1006 196 47 23 chr15 29710977 29711191 -71669330 + MER20 DNA MER1_type 1 219 0 2319 75 3 0 chr15 29712075 29712380 -71668141 - AluSq SINE Alu -7 306 1 341 64 0 6 chr15 29712601 29712687 -71667834 - AluSp/q SINE Alu 0 317 245 2102 167 33 14 chr15 29712894 29713314 -71667207 + L1MB3 LINE L1 5754 6181 -2 1270 186 0 0 chr15 29715421 29715641 -71664880 + AluJb SINE Alu 73 292 -20 210 308 64 0 chr15 29715792 29715870 -71664651 + MIR SINE MIR 15 97 -165 195 69 0 0 chr15 29715894 29715923 -71664598 + (TC)n Simple_repeat Simple_repeat 1 29 0 1648 151 52 0 chr15 29717994 29718285 -71662236 + AluJb SINE Alu 1 306 -6 790 320 86 42 chr15 29718382 29719156 -71661365 + L1ME LINE L1 4739 5544 -622 447 277 44 29 chr15 29719184 29719390 -71661131 + L1ME LINE L1 5547 5755 -366 690 193 0 22 chr15 29719939 29720074 -71660447 + FLAM_A SINE Alu 1 132 -1 2286 83 3 0 chr15 29720227 29720529 -71659992 + AluY SINE Alu 1 303 -8 1732 143 10 17 chr15 29721270 29721570 -71658951 - AluJo SINE Alu -14 298 1 195 42 0 0 chr15 29722074 29722098 -71658423 + (A)n Simple_repeat Simple_repeat 1 24 0 474 18 0 0 chr15 29724468 29724523 -71655998 + (TA)n Simple_repeat Simple_repeat 1 55 0 2077 146 193 71 chr15 29724587 29725122 -71655399 - MER7C DNA MER2_type 0 602 3 223 322 110 44 chr15 29725560 29725787 -71654734 + MIR SINE MIR 21 262 0 735 254 225 17 chr15 29726866 29727212 -71653309 - L2 LINE L2 0 3313 2896 27 62 0 0 chr15 29730478 29730526 -71649995 + GC_rich Low_complexity Low_complexity 1 48 0 429 173 53 0 chr15 29730601 29730902 -71649619 + (CCG)n Simple_repeat Simple_repeat 1 316 0 419 143 0 0 chr15 29731056 29731119 -71649402 + L1PA7 LINE L1 6081 6143 -11 30 0 0 0 chr15 29731623 29731653 -71648868 + AT_rich Low_complexity Low_complexity 1 30 0 338 182 136 0 chr15 29732017 29732083 -71648438 + MADE1 DNA Mariner 1 75 -5 1280 188 121 30 chr15 29732127 29732457 -71648064 + MER46B DNA MER2_type 2 236 0 301 240 31 62 chr15 29732892 29732988 -71647533 - L1MC4 LINE L1 -1334 6708 6616 1257 138 14 24 chr15 29733086 29733383 -71647138 - THE1B LTR MaLR 0 364 1 393 308 88 85 chr15 29733658 29734191 -71646330 - L1 LINE L1 -1826 4320 3748 2422 48 3 0 chr15 29734191 29734482 -71646039 - AluY SINE Alu -19 292 1 393 308 88 85 chr15 29734482 29734684 -71645837 - L1 LINE L1 -2398 3748 3548 575 122 11 3 chr15 29734902 29735009 -71645512 - L1MA9 LINE L1 -199 6092 5987 23 108 0 0 chr15 29735308 29735401 -71645120 + AT_rich Low_complexity Low_complexity 1 93 0 354 45 0 0 chr15 29735525 29735569 -71644952 + (TA)n Simple_repeat Simple_repeat 1 44 0 727 224 6 19 chr15 29735659 29735815 -71644706 - MSTD LTR MaLR 0 396 243 520 119 0 48 chr15 29735898 29735982 -71644539 - MSTD LTR MaLR -315 81 2 223 312 65 13 chr15 29737065 29737142 -71643379 + L2 LINE L2 3187 3267 -5 700 278 89 57 chr15 29737163 29737566 -71642955 + L2 LINE L2 2305 2720 -594 2193 245 82 35 chr15 29737608 29738432 -71642089 + L1MEc LINE L1 304 1166 -5230 2324 47 3 3 chr15 29739058 29739354 -71641167 - AluY SINE Alu -15 296 1 209 89 36 36 chr15 29740625 29740681 -71639840 + CT-rich Low_complexity Low_complexity 1 56 0 2680 249 30 82 chr15 29740743 29741250 -71639271 + L1MC4 LINE L1 6635 7056 -986 2328 43 10 7 chr15 29741250 29741555 -71638966 - AluY SINE Alu -5 306 1 2680 249 30 82 chr15 29741555 29742143 -71638378 + L1MC4 LINE L1 7056 7673 -369 2265 26 0 7 chr15 29742730 29743000 -71637521 + AluY SINE Alu 41 308 -3 297 227 39 0 chr15 29744711 29744864 -71635657 + (TTA)n Simple_repeat Simple_repeat 1 158 0 237 300 64 21 chr15 29745180 29745320 -71635201 - L1ME2 LINE L1 -15 6149 6004 * 333 145 0 0 chr15 29745318 29745394 -71635127 + (TA)n Simple_repeat Simple_repeat 1 76 0 * 380 261 19 38 chr15 29745379 29745484 -71635037 + L1MC4 LINE L1 6571 6702 -1139 3617 228 52 56 chr15 29745506 29745522 -71634999 - L1ME2 LINE L1 -175 5991 5976 1601 72 0 0 chr15 29745522 29745715 -71634806 - AluSq SINE Alu -51 262 70 3617 228 52 56 chr15 29745715 29747812 -71632709 - L1ME2 LINE L1 -190 5976 3898 2857 19 0 0 chr15 29747964 29748282 -71632239 + AluYb8 SINE Alu 1 318 0 295 154 15 46 chr15 29748602 29748667 -71631854 - L2 LINE L2 -1 3312 3250 21 36 0 0 chr15 29749176 29749204 -71631317 + AT_rich Low_complexity Low_complexity 1 28 0 2267 53 3 3 chr15 29749574 29749882 -71630639 - AluSp SINE Alu 0 308 1 23 0 0 0 chr15 29750731 29750754 -71629767 + AT_rich Low_complexity Low_complexity 1 23 0 1277 39 0 0 chr15 29750754 29750909 -71629612 - L1PA4 LINE L1 -3 6152 5998 5392 77 25 9 chr15 29752086 29752861 -71627660 - L1PA8A LINE L1 -4 6127 5341 3421 219 35 55 chr15 29753435 29755304 -71625217 + L1MC3 LINE L1 3995 5899 -247 2215 103 3 3 chr15 29755304 29755595 -71624926 + AluSg SINE Alu 1 291 -19 3421 219 35 55 chr15 29755595 29755898 -71624623 + L1MC3 LINE L1 5899 5295 -851 2084 86 11 4 chr15 29755898 29756177 -71624344 + AluSq SINE Alu 1 281 -32 3421 219 35 55 chr15 29756177 29756279 -71624242 + L1MC3 LINE L1 5294 5396 -750 1365 184 44 29 chr15 29756311 29756326 -71624195 + L1MC3 LINE L1 6840 6853 -932 210 71 0 0 chr15 29756326 29756354 -71624167 + (CAAAG)n Simple_repeat Simple_repeat 2 29 0 1365 184 44 29 chr15 29756354 29756681 -71623840 + L1MC3 LINE L1 6853 7187 -598 2748 88 21 19 chr15 29756688 29757118 -71623403 + MLT2A1 LTR ERVL 14 444 0 2954 172 17 3 chr15 29757121 29757707 -71622814 + L1MC3 LINE L1 7184 7777 -8 203 365 141 0 chr15 29758267 29758423 -71622098 + L2 LINE L2 1700 1877 -1437 340 279 41 34 chr15 29758723 29758870 -71621651 + L2 LINE L2 2616 2763 -551 521 293 37 16 chr15 29758928 29759170 -71621351 - LTR16C LTR ERVL -58 433 187 291 281 21 10 chr15 29759400 29759496 -71621025 - LTR33 LTR ERVL 0 521 425 344 324 34 0 chr15 29759594 29759742 -71620779 - LTR33 LTR ERVL -256 265 113 423 277 8 25 chr15 29759844 29759963 -71620558 + L2 LINE L2 3190 3306 -7 1433 273 36 11 chr15 29760659 29761099 -71619422 + MLT1C LTR MaLR 17 467 0 2349 93 0 3 chr15 29761186 29761488 -71619033 - AluSq SINE Alu -12 301 1 358 304 32 16 chr15 29761754 29761879 -71618642 - L2 LINE L2 -12 3301 3175 195 363 27 51 chr15 29761934 29762270 -71618251 - L2 LINE L2 -534 2780 2453 1255 167 11 61 chr15 29762563 29762826 -71617695 + AluJo SINE Alu 44 293 -19 36 53 0 0 chr15 29763044 29763101 -71617420 + AT_rich Low_complexity Low_complexity 1 57 0 4957 168 14 13 chr15 29764679 29765654 -71614867 - L1MA9 LINE L1 0 6312 5337 286 111 0 0 chr15 29765654 29765699 -71614822 + L1PA3 LINE L1 6109 6153 -2 603 214 54 0 chr15 29765717 29765885 -71614636 - L1MA9 LINE L1 -795 5351 5175 247 308 83 15 chr15 29766590 29766856 -71613665 - L1ME3A LINE L1 -234 5936 5653 186 103 0 0 chr15 29766869 29766898 -71613623 + (TATATG)n Simple_repeat Simple_repeat 1 29 0 312 246 117 84 chr15 29766952 29767131 -71613390 - L1ME LINE L1 -5045 1025 841 380 250 139 5 chr15 29767169 29767325 -71613196 + MER3 DNA MER1_type 9 131 -78 1589 189 7 13 chr15 29767417 29767719 -71612802 + AluJb SINE Alu 6 305 -7 246 275 201 31 chr15 29767897 29768221 -71612300 - L1ME LINE L1 -224 5897 5519 2015 44 4 55 chr15 29768383 29768655 -71611866 - AluY SINE Alu -14 297 40 465 320 40 33 chr15 29769350 29769650 -71610871 + LTR16A1 LTR ERVL 147 448 -9 387 328 122 3 chr15 29770695 29771024 -71609497 + L1MC/D LINE L1 5454 5821 -1987 1909 108 7 25 chr15 29772146 29772424 -71608097 + AluSc SINE Alu 35 307 -2 1457 56 0 20 chr15 29773008 29773206 -71607315 - L1PA5 LINE L1 -1 6153 5960 234 91 0 0 chr15 29773753 29773786 -71606735 + (TG)n Simple_repeat Simple_repeat 1 33 0 24 91 0 0 chr15 29775383 29775449 -71605072 + AT_rich Low_complexity Low_complexity 1 66 0 234 0 0 0 chr15 29775989 29776015 -71604506 + (CA)n Simple_repeat Simple_repeat 2 27 0 29 47 0 0 chr15 29776569 29776612 -71603909 + AT_rich Low_complexity Low_complexity 1 43 0 284 284 15 0 chr15 29776648 29776715 -71603806 + L2 LINE L2 3227 3294 -19 17185 42 2 0 chr15 29777939 29780858 -71599663 + L1PA5 LINE L1 3246 6147 -7 303 241 205 0 chr15 29780871 29780983 -71599538 + L1M4 LINE L1 4487 4621 -1525 3228 26 0 0 chr15 29781026 29781404 -71599117 + L1PA5 LINE L1 5770 6147 -7 198 0 0 0 chr15 29782050 29782072 -71598449 + (A)n Simple_repeat Simple_repeat 1 22 0 317 102 17 0 chr15 29783679 29783738 -71596783 + (CCG)n Simple_repeat Simple_repeat 1 60 0 435 276 0 15 chr15 29783778 29783912 -71596609 + (CCG)n Simple_repeat Simple_repeat 3 134 0 5151 101 5 4 chr15 29784464 29785217 -71595304 + L1PA13 LINE L1 5405 6158 -5 1661 111 111 0 chr15 29785425 29785686 -71594835 - AluSg SINE Alu -20 290 1 24 77 0 0 chr15 29787528 29787580 -71592941 + GC_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr15 29791990 29792019 -71588502 + AT_rich Low_complexity Low_complexity 1 29 0 1266 303 96 57 chr15 29792936 29794005 -71586516 - L2 LINE L2 0 3313 2183 207 0 0 0 chr15 29794653 29794676 -71585845 + (TC)n Simple_repeat Simple_repeat 1 23 0 237 260 0 0 chr15 29795632 29795682 -71584839 + L2 LINE L2 2271 2320 -994 198 360 36 36 chr15 29795819 29795930 -71584591 + MIR SINE MIR 16 126 -82 248 231 198 44 chr15 29796695 29796786 -71583735 + L2 LINE L2 3121 3225 -47 4612 176 33 28 chr15 29798496 29799471 -71581050 - L1MC2 LINE L1 -8 6336 5357 1854 114 20 17 chr15 29799519 29799817 -71580704 - AluSx SINE Alu -13 299 1 26 50 0 0 chr15 29799924 29799964 -71580557 + AT_rich Low_complexity Low_complexity 1 40 0 311 236 135 0 chr15 29800024 29800113 -71580408 - L1 LINE L1 -1601 4545 4445 943 171 23 0 chr15 29800219 29800394 -71580127 - L1PA16 LINE L1 -4 6162 5984 2136 119 0 3 chr15 29800594 29800904 -71579617 + AluSc SINE Alu 1 309 0 28 61 0 0 chr15 29801284 29801333 -71579188 + AT_rich Low_complexity Low_complexity 1 49 0 2391 187 166 33 chr15 29801413 29801593 -71578928 + Charlie1a DNA MER1_type 67 222 -2539 1789 147 14 3 chr15 29801593 29801878 -71578643 + AluJb SINE Alu 9 296 -16 2391 187 166 33 chr15 29801878 29802446 -71578075 + Charlie1a DNA MER1_type 222 914 -541 1183 158 0 37 chr15 29802450 29802665 -71577856 + AluJb SINE Alu 87 293 -19 249 57 0 0 chr15 29802667 29802702 -71577819 + (TA)n Simple_repeat Simple_repeat 2 36 0 892 183 245 9 chr15 29802722 29803045 -71577476 + Charlie1a DNA MER1_type 1057 1455 0 2257 95 0 0 chr15 29803519 29803815 -71576706 + AluSq SINE Alu 1 296 -17 228 250 90 30 chr15 29804172 29804272 -71576249 + L1ME4a LINE L1 5972 6077 -44 2024 131 3 0 chr15 29805114 29805419 -71575102 + AluSg SINE Alu 1 306 -4 192 40 0 0 chr15 29805656 29805681 -71574840 + (CA)n Simple_repeat Simple_repeat 2 26 0 308 277 0 0 chr15 29806760 29806825 -71573696 + C-rich Low_complexity Low_complexity 1 65 0 283 254 92 2 chr15 29807055 29807175 -71573346 - L1ME LINE L1 -363 5799 5668 444 19 0 0 chr15 29809144 29809197 -71571324 + (TG)n Simple_repeat Simple_repeat 2 54 0 2113 120 3 0 chr15 29809758 29810058 -71570463 - AluSx SINE Alu -11 301 1 2282 141 37 0 chr15 29810569 29810952 -71569569 + L1MB3 LINE L1 5787 6183 0 1236 139 15 105 chr15 29811069 29811336 -71569185 - MSTB LTR MaLR -183 243 1 2045 162 31 10 chr15 29812799 29813182 -71567339 - L1MB5 LINE L1 -1 6173 5783 548 126 11 0 chr15 29813183 29813270 -71567251 - AluSg/x SINE Alu -6 304 217 546 213 0 0 chr15 29813278 29813386 -71567135 - L1MB5 LINE L1 -389 5785 5678 620 227 142 98 chr15 29813421 29813941 -71566580 - MLT1H1 LTR MaLR 0 555 19 242 215 131 42 chr15 29813968 29814182 -71566339 - HAL1 LINE L1 -1449 1058 826 1876 141 7 3 chr15 29814251 29814568 -71565953 + AluJo SINE Alu 1 312 0 461 321 69 87 chr15 29814722 29815170 -71565351 - HAL1 LINE L1 -2045 462 23 989 201 47 23 chr15 29815535 29815749 -71564772 + MER20 DNA MER1_type 1 219 0 207 0 0 0 chr15 29815864 29815887 -71564634 + (A)n Simple_repeat Simple_repeat 1 23 0 2203 89 3 3 chr15 29816639 29816943 -71563578 - AluSq SINE Alu -9 304 1 341 64 0 6 chr15 29817164 29817250 -71563271 - AluSp/q SINE Alu 0 317 245 2112 164 33 14 chr15 29817457 29817877 -71562644 + L1MB3 LINE L1 5754 6181 -2 1270 186 0 0 chr15 29819981 29820201 -71560320 + AluJb SINE Alu 73 292 -20 210 308 64 0 chr15 29820352 29820430 -71560091 + MIR SINE MIR 15 97 -165 652 326 76 64 chr15 29822491 29822556 -71557965 + L1ME4a LINE L1 4589 4652 -1494 1607 162 51 0 chr15 29822556 29822852 -71557669 + AluJb SINE Alu 1 311 -1 652 326 76 64 chr15 29822852 29823431 -71557090 + L1ME4a LINE L1 4652 5241 -905 417 323 47 35 chr15 29823441 29823934 -71556587 + L1ME4a LINE L1 5256 5755 -366 227 178 27 171 chr15 29824031 29824177 -71556344 + L1ME4a LINE L1 5891 6015 -106 694 193 0 22 chr15 29824481 29824616 -71555905 + FLAM_A SINE Alu 1 132 -1 2319 85 3 0 chr15 29824769 29825076 -71555445 + AluY SINE Alu 1 308 -3 1770 137 10 17 chr15 29825816 29826116 -71554405 - AluJo SINE Alu -14 298 1 483 18 0 0 chr15 29829017 29829073 -71551448 + (CA)n Simple_repeat Simple_repeat 1 56 0 2273 157 218 6 chr15 29829074 29829565 -71550956 - MER7C DNA MER2_type -5 597 3 733 257 225 17 chr15 29831301 29831647 -71548874 - L2 LINE L2 0 3313 2896 29 60 0 0 chr15 29834931 29834981 -71545540 + GC_rich Low_complexity Low_complexity 1 50 0 6857 47 8 14 chr15 29837102 29838417 -71542104 + L1PA5 LINE L1 4899 6170 -2 349 380 23 12 chr15 29838748 29838919 -71541602 - MIR SINE MIR 0 262 90 2300 65 19 13 chr15 29838923 29839230 -71541291 - AluY SINE Alu -1 310 2 2020 122 45 50 chr15 29839788 29840165 -71540356 - THE1C LTR MaLR 0 375 1 327 348 39 26 chr15 29840237 29840392 -71540129 - MIR SINE MIR -88 174 18 1753 151 29 26 chr15 29840674 29840985 -71539536 - AluSx SINE Alu 0 312 1 1428 51 0 6 chr15 29841456 29841633 -71538888 + L1PA6 LINE L1 5972 6147 -7 1909 287 42 44 chr15 29842011 29842338 -71538183 + L2 LINE L2 1852 2178 -1136 1171 171 9 48 chr15 29842338 29842566 -71537955 - MER20 DNA MER1_type 0 219 1 1909 287 42 44 chr15 29842566 29843053 -71537468 + L2 LINE L2 2178 2664 -650 210 37 0 0 chr15 29843147 29843174 -71537347 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 307 325 37 18 chr15 29843234 29843257 -71537264 + L2 LINE L2 2709 2730 -584 2075 117 7 0 chr15 29843257 29843555 -71536966 - AluSg SINE Alu 0 310 11 307 325 37 18 chr15 29843555 29843694 -71536827 + L2 LINE L2 2730 2874 -440 505 295 4 88 chr15 29843826 29843912 -71536609 - L1M4 LINE L1 -1016 5130 5038 1569 74 5 18 chr15 29843912 29844129 -71536392 - AluSp SINE Alu -9 304 91 505 295 4 88 chr15 29844129 29844269 -71536252 - L1M4 LINE L1 -1108 5038 4923 1965 242 73 27 chr15 29844270 29844305 -71536216 - L1M4 LINE L1 -1577 4569 4537 2445 62 0 0 chr15 29844305 29844611 -71535910 - AluY SINE Alu -5 306 1 1965 242 73 27 chr15 29844611 29845324 -71535197 - L1M4 LINE L1 -1609 4537 3786 412 303 51 6 chr15 29845364 29845539 -71534982 + L1ME4a LINE L1 5509 5691 -430 357 294 110 61 chr15 29845657 29845872 -71534649 + L1ME4a LINE L1 5864 6094 -27 1593 211 29 29 chr15 29845872 29846246 -71534275 - MLT1A2 LTR MaLR 0 374 1 357 294 110 61 chr15 29846246 29846275 -71534246 + L1ME4a LINE L1 6094 6120 -1 2052 121 3 6 chr15 29846740 29847053 -71533468 + AluSx SINE Alu 1 312 0 1107 178 123 105 chr15 29847512 29847961 -71532560 - MSTB2 LTR MaLR 0 457 1 198 0 0 0 chr15 29847990 29848012 -71532509 + (TA)n Simple_repeat Simple_repeat 2 23 0 284 250 0 0 chr15 29848012 29848096 -71532425 - L1MC4 LINE L1 -1339 6703 6620 212 152 43 0 chr15 29848121 29848167 -71532354 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 1153 119 161 23 chr15 29848497 29848715 -71531806 - AluSx SINE Alu -64 248 1 21 0 0 0 chr15 29849118 29849139 -71531382 + AT_rich Low_complexity Low_complexity 1 21 0 4432 161 44 27 chr15 29849279 29849445 -71531076 - L1MA8 LINE L1 -4 6287 6125 180 0 0 0 chr15 29849445 29849465 -71531056 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1971 124 3 11 chr15 29849469 29849751 -71530770 - AluSx SINE Alu -32 280 1 4432 161 44 27 chr15 29849751 29850528 -71529993 - L1MA8 LINE L1 -168 6123 5323 430 265 51 0 chr15 29850646 29850763 -71529758 - L2 LINE L2 0 3313 3191 330 271 31 0 chr15 29851612 29851708 -71528813 - LTR33A LTR ERVL -361 162 64 1212 326 55 8 chr15 29852375 29852995 -71527526 - ERVL LTR ERVL -395 5369 4721 24 32 0 0 chr15 29853124 29853155 -71527366 + AT_rich Low_complexity Low_complexity 1 31 0 336 242 97 66 chr15 29853327 29853554 -71526967 - HAL1 LINE L1 0 2507 2274 23 0 0 0 chr15 29854666 29854689 -71525832 + AT_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chr15 29854716 29854760 -71525761 + AT_rich Low_complexity Low_complexity 1 44 0 2189 128 31 6 chr15 29855464 29855824 -71524697 - L1PA11 LINE L1 -4 6170 5802 24 32 0 0 chr15 29856232 29856263 -71524258 + AT_rich Low_complexity Low_complexity 1 31 0 32 57 0 0 chr15 29857301 29857354 -71523167 + AT_rich Low_complexity Low_complexity 1 53 0 229 268 18 0 chr15 29858004 29858060 -71522461 - MIR SINE MIR -2 260 204 241 292 42 42 chr15 29858113 29858185 -71522336 - MIR SINE MIR -169 93 22 294 304 62 88 chr15 29858429 29858689 -71521832 + MIR SINE MIR 3 255 -7 259 182 0 18 chr15 29858947 29859002 -71521519 - MER112 DNA MER1_type -7 253 200 186 43 0 0 chr15 29859137 29859160 -71521361 + (TATG)n Simple_repeat Simple_repeat 2 24 0 212 145 133 24 chr15 29859319 29859402 -71521119 + (TTAAA)n Simple_repeat Simple_repeat 1 92 0 264 77 0 0 chr15 29859439 29859478 -71521043 + (CA)n Simple_repeat Simple_repeat 2 40 0 260 274 24 43 chr15 29859596 29859760 -71520761 + (CAGAGA)n Simple_repeat Simple_repeat 2 162 0 22 0 0 0 chr15 29861034 29861056 -71519465 + AT_rich Low_complexity Low_complexity 1 22 0 2061 115 3 16 chr15 29861653 29861957 -71518564 - AluSx SINE Alu -12 300 1 243 286 105 0 chr15 29862190 29862295 -71518226 - MIR SINE MIR -56 206 91 187 350 60 10 chr15 29862699 29862799 -71517722 + MER5B DNA MER1_type 24 128 -50 201 244 11 111 chr15 29864546 29864636 -71515885 + L2 LINE L2 3190 3270 -2 311 310 50 0 chr15 29866311 29866411 -71514110 + L1ME LINE L1 5719 5823 -298 201 236 18 36 chr15 29868122 29868177 -71512344 - MIR SINE MIR -63 145 92 1941 95 27 34 chr15 29870377 29870673 -71509848 + AluSx SINE Alu 3 296 -16 1894 111 28 3 chr15 29870673 29870962 -71509559 - AluSq SINE Alu -17 296 1 307 327 81 78 chr15 29871663 29871984 -71508537 + L1MDb LINE L1 376 697 -5712 468 0 0 0 chr15 29871989 29872041 -71508480 + (TC)n Simple_repeat Simple_repeat 2 53 0 387 0 0 0 chr15 29872040 29872083 -71508438 + (TG)n Simple_repeat Simple_repeat 2 44 0 * 349 275 138 9 chr15 29872377 29872486 -71508035 + MIR SINE MIR 14 136 -126 210 354 80 0 chr15 29873764 29873879 -71506642 + MIR SINE MIR 24 152 -56 1159 173 12 71 chr15 29873954 29874251 -71506270 + AluJo SINE Alu 44 325 0 183 234 16 62 chr15 29874252 29874316 -71506205 + MIR SINE MIR 194 254 -8 466 232 150 36 chr15 29874628 29874848 -71505673 - L1ME LINE L1 -382 5780 5536 2098 102 31 10 chr15 29874856 29875150 -71505371 - AluY SINE Alu -11 300 1 1941 179 0 0 chr15 29875339 29875651 -71504870 + AluJo SINE Alu 1 312 0 1920 147 0 0 chr15 29875668 29875985 -71504536 + AluSg SINE Alu 1 317 0 2010 190 15 12 chr15 29876032 29876068 -71504453 + L1 LINE L1 3297 3331 -2815 2279 104 0 0 chr15 29876068 29876376 -71504145 + AluY SINE Alu 1 308 -3 2010 190 15 12 chr15 29876376 29876819 -71503702 + L1 LINE L1 3331 3777 -2369 1557 166 3 21 chr15 29877662 29877946 -71502575 + AluJo SINE Alu 10 288 -24 257 269 24 19 chr15 29877996 29878101 -71502420 + MIR3 SINE MIR 65 170 -38 294 29 0 0 chr15 29880110 29880145 -71500376 + (CA)n Simple_repeat Simple_repeat 1 35 0 27 0 0 0 chr15 29882273 29882300 -71498221 + AT_rich Low_complexity Low_complexity 1 27 0 6233 20 0 0 chr15 29884596 29885350 -71495171 - L1P LINE L1 -1490 4656 3903 3679 209 37 4 chr15 29885657 29886621 -71493900 + L1 LINE L1 2761 3756 -2390 611 322 90 4 chr15 29886767 29887000 -71493521 + MIR SINE MIR 8 260 -2 21 0 0 0 chr15 29887290 29887311 -71493210 + AT_rich Low_complexity Low_complexity 1 21 0 3522 169 129 96 chr15 29887856 29888328 -71492193 + L1MC3 LINE L1 6613 7068 -717 249 233 70 23 chr15 29888328 29888414 -71492107 + MLT1F1 LTR MaLR 35 124 -443 3522 169 129 96 chr15 29888414 29888989 -71491532 + L1MC3 LINE L1 7068 7782 -3 10670 76 1 0 chr15 29889240 29890706 -71489815 + L1P LINE L1 649 2116 -4030 41 58 0 0 chr15 29940892 29940961 -71439560 + AT_rich Low_complexity Low_complexity 1 69 0 229 217 14 0 chr15 29941161 29941230 -71439291 + (TA)n Simple_repeat Simple_repeat 2 71 0 25 31 0 0 chr15 29941326 29941358 -71439163 + AT_rich Low_complexity Low_complexity 1 32 0 225 0 0 0 chr15 29942583 29942608 -71437913 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 234 276 40 0 chr15 29943481 29943557 -71436964 - L1M1 LINE L1 -725 5575 5497 22 70 0 0 chr15 29943674 29943717 -71436804 + AT_rich Low_complexity Low_complexity 1 43 0 355 211 43 130 chr15 29944335 29944520 -71436001 + L2 LINE L2 3144 3312 -1 24 32 0 0 chr15 29945201 29945232 -71435289 + AT_rich Low_complexity Low_complexity 1 31 0 224 200 15 0 chr15 29945873 29945938 -71434583 + GA-rich Low_complexity Low_complexity 3 68 0 1357 152 5 5 chr15 29946215 29946426 -71434095 - AluJo SINE Alu -78 234 24 685 226 81 68 chr15 29946433 29946686 -71433835 - LTR37A LTR ERV1 -1 425 166 1855 162 0 7 chr15 29946686 29946982 -71433539 - AluJb SINE Alu -18 294 1 685 226 81 68 chr15 29946982 29947038 -71433483 - LTR37A LTR ERV1 -260 166 112 1938 134 37 3 chr15 29947133 29947280 -71433241 - AluJo SINE Alu -4 308 167 234 0 0 0 chr15 29947280 29947306 -71433215 + (CA)n Simple_repeat Simple_repeat 2 27 0 1938 134 37 3 chr15 29947306 29947456 -71433065 - AluJo SINE Alu -145 167 1 30 59 0 0 chr15 29948615 29948666 -71431855 + AT_rich Low_complexity Low_complexity 1 51 0 2242 125 0 0 chr15 29948725 29949022 -71431499 - AluSx SINE Alu -15 297 1 30 45 0 0 chr15 29949031 29949075 -71431446 + AT_rich Low_complexity Low_complexity 1 44 0 3471 130 24 49 chr15 29949569 29950185 -71430336 - LTR26 LTR ERV1 0 603 3 2201 67 0 0 chr15 29950926 29951194 -71429327 + AluY SINE Alu 35 302 -9 702 239 11 17 chr15 29951355 29951531 -71428990 - MER5B DNA MER1_type -3 175 1 553 129 35 190 chr15 29951688 29951920 -71428601 - MER20 DNA MER1_type -2 217 22 548 249 77 22 chr15 29952736 29952917 -71427604 - MIR SINE MIR -2 260 70 2524 198 6 8 chr15 29952933 29953449 -71427072 - MER119 DNA MER1_type 0 583 69 241 268 37 12 chr15 29953539 29953621 -71426900 + L2 LINE L2 3171 3254 -18 424 290 48 5 chr15 29954299 29954485 -71426036 + L1MC/D LINE L1 5614 5807 -2001 643 214 0 15 chr15 29954487 29954618 -71425903 - FLAM_A SINE Alu -4 129 1 1095 220 9 5 chr15 29954636 29954854 -71425667 - MER58A DNA MER1_type -1 223 5 574 315 20 30 chr15 29956349 29956549 -71423972 - MIR3 SINE MIR -9 199 2 2539 51 0 22 chr15 29956922 29957237 -71423284 - AluY SINE Alu -3 308 1 183 80 0 0 chr15 29957315 29957340 -71423181 + (ATG)n Simple_repeat Simple_repeat 2 26 0 514 183 0 124 chr15 29957345 29957498 -71423023 - MIR SINE MIR -10 252 119 246 284 216 0 chr15 29957588 29957704 -71422817 - MIR3 SINE MIR -1 207 67 313 233 128 0 chr15 29957855 29957941 -71422580 + MIR SINE MIR 88 184 -78 4927 36 2 2 chr15 29958673 29959263 -71421258 - L1PA5 LINE L1 0 6154 5565 189 0 0 0 chr15 29959910 29959931 -71420590 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 299 305 79 35 chr15 29960046 29960249 -71420272 - MIR SINE MIR -46 216 5 328 292 161 12 chr15 29960398 29960559 -71419962 + MIR SINE MIR 73 257 -5 230 172 53 189 chr15 29960686 29960855 -71419666 + LTR37A LTR ERV1 39 184 -242 648 164 15 8 chr15 29960869 29961003 -71419518 + LTR37A LTR ERV1 290 424 -2 3828 123 5 41 chr15 29961681 29962338 -71418183 + MER41B LTR ERV1 1 633 -2 216 227 0 0 chr15 29962760 29962804 -71417717 - L2 LINE L2 -209 3063 3020 1015 309 111 38 chr15 29962851 29963502 -71417019 - L2 LINE L2 -720 2594 1897 261 213 33 0 chr15 29963502 29963563 -71416958 - MLT2D LTR ERVL 0 520 458 1674 143 23 27 chr15 29963620 29963920 -71416601 - MLT2D LTR ERVL -50 364 66 525 125 10 10 chr15 29963953 29964049 -71416472 - MLT2D LTR ERVL -318 96 1 245 307 11 0 chr15 29964050 29964138 -71416383 - L2 LINE L2 -1414 1900 1812 555 246 8 0 chr15 29964155 29964273 -71416248 + MER5B DNA MER1_type 7 125 -53 442 211 11 22 chr15 29964339 29964429 -71416092 - MER5A DNA MER1_type -92 97 9 328 341 38 34 chr15 29964423 29964687 -71415834 - L2 LINE L2 -1503 1811 1547 * 277 381 46 55 chr15 29964722 29965089 -71415432 - L2 LINE L2 -353 2961 2598 357 24 0 0 chr15 29965267 29965309 -71415212 + (GA)n Simple_repeat Simple_repeat 2 43 0 351 278 74 14 chr15 29965678 29965854 -71414667 + MIR SINE MIR 15 245 -17 1151 194 29 7 chr15 29966363 29966636 -71413885 + L1MD2 LINE L1 3569 3847 -2299 356 130 0 0 chr15 29966638 29966707 -71413814 + L1MB4 LINE L1 6112 6180 0 4557 215 29 29 chr15 29966708 29968182 -71412339 + L1MD2 LINE L1 4212 5706 -653 1138 73 7 0 chr15 29968182 29968333 -71412188 - L1PA5 LINE L1 -6 6148 5997 4557 215 29 29 chr15 29968333 29968960 -71411561 + L1MD2 LINE L1 5706 6331 -28 2897 195 25 62 chr15 29968972 29969087 -71411434 + L1ME1 LINE L1 5186 5304 -1008 937 178 6 6 chr15 29969087 29969250 -71411271 + FAM SINE Alu 5 167 -8 2897 195 25 62 chr15 29969250 29970142 -71410379 + L1ME1 LINE L1 5304 6288 -24 1744 141 43 7 chr15 29970393 29970670 -71409851 - AluJo SINE Alu -25 287 1 195 42 0 0 chr15 29970827 29970851 -71409670 + (TA)n Simple_repeat Simple_repeat 2 25 0 259 277 43 90 chr15 29972233 29972373 -71408148 - L2 LINE L2 -101 3212 3082 1678 134 52 4 chr15 29972373 29972642 -71407879 - AluJo SINE Alu -20 292 11 259 277 43 90 chr15 29972642 29972689 -71407832 - L2 LINE L2 -231 3082 3034 527 278 82 12 chr15 29973004 29973259 -71407262 - Charlie7 DNA MER1_type -1912 700 428 398 256 73 22 chr15 29974417 29974554 -71405967 - MLT1L LTR MaLR -337 278 135 1626 143 13 57 chr15 29974608 29974908 -71405613 + AluJb SINE Alu 1 287 -25 235 298 81 40 chr15 29975022 29975146 -71405375 - L2 LINE L2 -241 3031 2903 251 170 0 0 chr15 29976671 29976718 -71403803 + MER4B-int LTR ERV1 1150 1196 -5562 1898 146 0 3 chr15 29976743 29977030 -71403491 - AluJb SINE Alu -26 286 1 756 217 133 4 chr15 29977826 29978052 -71402469 + MLT1L LTR MaLR 357 611 -4 303 323 49 61 chr15 29978384 29978548 -71401973 + MIR SINE MIR 66 227 -35 374 183 0 75 chr15 29978783 29978876 -71401645 - MER103 DNA DNA -70 96 11 338 330 75 64 chr15 29978960 29979427 -71401094 + L2 LINE L2 2429 2900 -414 331 284 19 65 chr15 29980778 29980933 -71399588 - MIR3 SINE MIR -1 207 60 223 396 27 9 chr15 29981417 29981528 -71398993 + L2 LINE L2 3132 3244 -28 282 274 76 3 chr15 29981529 29981682 -71398839 + MER63A DNA MER1_type 2 210 0 755 345 24 23 chr15 29982082 29982583 -71397938 - L2 LINE L2 -226 3046 2551 180 214 0 0 chr15 29982607 29982649 -71397872 - L2 LINE L2 -887 2427 2386 851 288 130 39 chr15 29982678 29983223 -71397298 - L2 LINE L2 -1190 2124 1530 509 297 78 18 chr15 29983527 29983746 -71396775 - L2 LINE L2 -1789 1525 1294 317 243 14 0 chr15 29984059 29984133 -71396388 + MER5C DNA MER1_type 1 75 -249 482 254 66 55 chr15 29984318 29984574 -71395947 - MER112 DNA MER1_type 0 260 2 474 191 59 29 chr15 29985005 29985141 -71395380 - MER53 DNA DNA 0 189 50 * 504 102 110 25 chr15 29985138 29985256 -71395265 - MER53 DNA DNA -61 128 1 265 125 0 71 chr15 29985267 29985323 -71395198 - MER69 DNA AcHobo -29 2497 2446 * 432 273 14 7 chr15 29985316 29985459 -71395062 - MER69 DNA AcHobo -1079 147 4 214 179 26 0 chr15 29985619 29985658 -71394863 + GA-rich Low_complexity Low_complexity 4 43 0 275 311 13 7 chr15 29985664 29985815 -71394706 + Charlie2 DNA MER1_type 129 280 -2582 574 212 42 16 chr15 29985993 29986186 -71394335 + Charlie2a DNA MER1_type 1465 1662 -1200 1094 157 10 29 chr15 29986268 29986472 -71394049 + AluJo SINE Alu 1 200 -112 204 40 0 0 chr15 29986472 29986497 -71394024 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 235 327 153 0 chr15 29987516 29987666 -71392855 + MIR SINE MIR 88 260 -2 2114 194 33 98 chr15 29988579 29989245 -71391276 + MER63C DNA MER1_type 1 623 -307 890 110 0 0 chr15 29989246 29989364 -71391157 + AluSc SINE Alu 186 303 -6 732 162 112 20 chr15 29989366 29989563 -71390958 + MER63C DNA MER1_type 617 831 -99 434 72 0 14 chr15 29989564 29989633 -71390888 - Alu SINE Alu -7 305 238 807 176 0 8 chr15 29989653 29989778 -71390743 - FLAM_C SINE Alu -19 124 1 295 257 40 10 chr15 29989778 29989879 -71390642 + MER63C DNA MER1_type 823 926 -4 390 305 61 12 chr15 29990000 29990164 -71390357 + MLT1L LTR MaLR 153 324 -291 2216 116 13 0 chr15 29990480 29990782 -71389739 + AluSx SINE Alu 1 306 -6 781 297 38 4 chr15 29990814 29991053 -71389468 + MIR SINE MIR 15 261 -1 320 0 0 24 chr15 29991240 29991281 -71389240 + (TTG)n Simple_repeat Simple_repeat 2 41 0 590 328 96 63 chr15 29991656 29992148 -71388373 + L2 LINE L2 2523 3028 -285 317 339 23 39 chr15 29992202 29992332 -71388189 + L2 LINE L2 3185 3312 -1 441 81 0 0 chr15 29992390 29992452 -71388069 + (CA)n Simple_repeat Simple_repeat 1 62 0 26 0 0 0 chr15 29992459 29992485 -71388036 + AT_rich Low_complexity Low_complexity 1 26 0 1311 241 59 14 chr15 29992516 29993162 -71387359 - L1MEc LINE L1 -2875 3340 2622 1731 148 96 42 chr15 29993197 29993259 -71387262 - LTR47A LTR ERVL -46 406 349 2438 65 0 31 chr15 29993259 29993580 -71386941 + AluY SINE Alu 1 311 0 1731 148 96 42 chr15 29993580 29993902 -71386619 - LTR47A LTR ERVL -103 349 1 2436 244 48 28 chr15 29993905 29994656 -71385865 - L1MEc LINE L1 -3612 2603 1869 1772 187 42 34 chr15 29994656 29995041 -71385480 + MLT1B LTR MaLR 1 388 -2 2436 244 48 28 chr15 29995041 29995183 -71385338 - L1MEc LINE L1 -4346 1869 1731 2798 93 0 0 chr15 29995183 29995547 -71384974 + THE1B LTR MaLR 1 364 0 2436 244 48 28 chr15 29995547 29995794 -71384727 - L1MEc LINE L1 -4484 1731 1477 793 53 26 0 chr15 29995795 29995909 -71384612 + (TTTC)n Simple_repeat Simple_repeat 1 117 0 621 238 91 27 chr15 29996004 29996204 -71384317 + MIR SINE MIR 13 211 -51 354 263 63 33 chr15 29996264 29996593 -71383928 - LTR67 LTR ERVL -29 528 151 3171 158 140 3 chr15 29996945 29997567 -71382954 - MER39 LTR ERV1 0 707 1 22 0 0 0 chr15 29999136 29999158 -71381363 + AT_rich Low_complexity Low_complexity 1 22 0 491 296 169 5 chr15 29999163 29999376 -71381145 - MIR SINE MIR -11 251 4 6466 85 19 18 chr15 29999532 30000642 -71379879 + L1PA14 LINE L1 5051 6161 0 2454 68 0 16 chr15 30000765 30001075 -71379446 - AluY SINE Alu -2 309 5 256 196 20 0 chr15 30001321 30001372 -71379149 - L2 LINE L2 0 3313 3262 2716 146 95 33 chr15 30002431 30002980 -71377541 + MER34C LTR ERV1 1 583 -2 2461 153 15 0 chr15 30003172 30003565 -71376956 - MER57A LTR ERV1 -4 399 1 188 229 0 0 chr15 30004016 30004051 -71376470 - L2 LINE L2 -16 3297 3263 1449 153 80 4 chr15 30004236 30004485 -71376036 - AluJo SINE Alu -44 268 1 180 348 79 11 chr15 30004609 30004698 -71375823 - MIR3 SINE MIR -7 201 107 2176 109 0 10 chr15 30004703 30005005 -71375516 - AluSx SINE Alu -13 299 1 190 293 81 40 chr15 30006250 30006349 -71374172 - MIR SINE MIR -63 145 43 402 162 0 0 chr15 30006434 30006508 -71374013 + CT-rich Low_complexity Low_complexity 3 76 0 1315 162 81 84 chr15 30006512 30006809 -71373712 - AluJo SINE Alu -16 296 1 402 214 12 0 chr15 30008020 30008104 -71372417 + FAM SINE Alu 85 169 -16 258 229 9 73 chr15 30009414 30009523 -71370998 + L1ME4a LINE L1 5944 6045 -76 1658 174 4 4 chr15 30009574 30009844 -71370677 + AluJb SINE Alu 1 270 -42 243 0 0 0 chr15 30009844 30009871 -71370650 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 222 229 0 0 chr15 30012053 30012101 -71368420 - L2 LINE L2 -3 3310 3263 219 354 56 13 chr15 30012351 30012489 -71368032 - MIR SINE MIR -58 150 40 195 42 0 0 chr15 30013433 30013457 -71367064 + (A)n Simple_repeat Simple_repeat 1 24 0 192 77 0 0 chr15 30015624 30015650 -71364871 + (TC)n Simple_repeat Simple_repeat 2 27 0 254 227 136 0 chr15 30015718 30015784 -71364737 - MIR SINE MIR -80 128 54 210 37 0 0 chr15 30016048 30016075 -71364446 + (TG)n Simple_repeat Simple_repeat 2 28 0 261 83 0 0 chr15 30017530 30017566 -71362955 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 616 184 0 142 chr15 30017732 30017798 -71362723 - MIR SINE MIR 0 262 188 1544 149 50 4 chr15 30017798 30018079 -71362442 - L1MB3 LINE L1 0 6183 5890 616 184 0 142 chr15 30018079 30018202 -71362319 - MIR SINE MIR -74 188 100 332 179 60 48 chr15 30019438 30019522 -71360999 - L1MA9 LINE L1 -1 6311 6227 2234 119 3 0 chr15 30019690 30020002 -71360519 - AluSq SINE Alu 0 313 1 405 353 95 22 chr15 30021697 30021929 -71358592 - MIR SINE MIR -13 249 1 317 263 13 0 chr15 30022766 30022842 -71357679 - MER5A DNA MER1_type -103 86 10 274 295 93 58 chr15 30023102 30023241 -71357280 + MER5B DNA MER1_type 2 145 -33 2261 179 69 18 chr15 30023533 30023968 -71356553 - MLT2B1 LTR ERVL -63 457 1 2159 109 3 0 chr15 30024087 30024370 -71356151 + AluSx SINE Alu 1 284 -28 22 0 0 0 chr15 30024371 30024393 -71356128 + AT_rich Low_complexity Low_complexity 1 22 0 576 116 0 0 chr15 30024920 30025006 -71355515 + L1MA9 LINE L1 5940 6025 -287 2239 109 7 0 chr15 30025029 30025332 -71355189 + AluSg SINE Alu 3 307 -3 183 211 53 0 chr15 30025849 30025887 -71354634 + MIR SINE MIR 196 235 -27 1086 193 14 5 chr15 30026139 30026346 -71354175 + MER3 DNA MER1_type 1 209 0 226 245 20 0 chr15 30026352 30026401 -71354120 + L2 LINE L2 3223 3272 0 1666 154 0 91 chr15 30027026 30027357 -71353164 - AluJb SINE Alu -3 309 9 1520 178 66 3 chr15 30027626 30027912 -71352609 + L1MB4 LINE L1 5862 6165 -15 220 353 95 9 chr15 30028335 30028451 -71352070 - L3b LINE CR1 -14 1569 1444 1812 164 3 3 chr15 30028469 30028762 -71351759 - AluJb SINE Alu -19 293 1 2011 247 104 14 chr15 30028963 30029538 -71350983 - MLT2E LTR ERVL -1 627 1 2184 64 0 48 chr15 30030004 30030328 -71350193 + AluY SINE Alu 1 310 0 1972 149 0 7 chr15 30030551 30030847 -71349674 + AluJo SINE Alu 1 294 -18 3614 157 16 38 chr15 30031444 30032196 -71348325 - L1MA4 LINE L1 0 6171 5400 375 299 85 23 chr15 30033467 30033644 -71346877 + MIR SINE MIR 52 239 -23 227 111 0 44 chr15 30034668 30034713 -71345808 + (TTCTCC)n Simple_repeat Simple_repeat 3 45 0 459 296 5 70 chr15 30034798 30035011 -71345510 + MIR SINE MIR 3 201 -61 254 320 144 0 chr15 30035028 30035125 -71345396 - MIR SINE MIR -69 139 29 1389 278 51 35 chr15 30035172 30035665 -71344856 + MLT1K LTR MaLR 16 516 -72 735 268 22 36 chr15 30036069 30036292 -71344229 - MIR SINE MIR -3 259 38 963 145 0 0 chr15 30036407 30036545 -71343976 - FAM SINE Alu -19 166 29 427 197 114 38 chr15 30036664 30036796 -71343725 + MIR SINE MIR 85 226 -36 243 88 0 0 chr15 30036798 30036832 -71343689 + (CAT)n Simple_repeat Simple_repeat 2 35 0 189 107 0 0 chr15 30036957 30036985 -71343536 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 288 227 52 52 chr15 30038089 30038186 -71342335 - HAL1b LINE L1 0 1348 1252 584 231 148 14 chr15 30038338 30038554 -71341967 - L1ME LINE L1 -315 5806 5562 1554 152 80 7 chr15 30038555 30038831 -71341690 - AluJo SINE Alu -16 296 1 181 298 0 0 chr15 30038877 30038924 -71341597 - MIR SINE MIR -138 124 78 1206 224 32 4 chr15 30040003 30040280 -71340241 + AluSx SINE Alu 1 285 -27 217 288 123 71 chr15 30040983 30041153 -71339368 - MER5A DNA MER1_type -2 187 9 280 336 67 34 chr15 30041425 30041574 -71338947 + MER5A DNA MER1_type 29 182 -7 1859 148 3 13 chr15 30042781 30043091 -71337430 + AluSx SINE Alu 1 307 -5 221 95 0 24 chr15 30043276 30043318 -71337203 + (ATTG)n Simple_repeat Simple_repeat 4 44 0 1464 122 5 0 chr15 30043318 30043515 -71337006 - AluSg/x SINE Alu -32 278 81 239 306 57 64 chr15 30043983 30044140 -71336381 - MIR SINE MIR -19 243 88 182 260 49 98 chr15 30044380 30044503 -71336018 + L2 LINE L2 3156 3272 0 181 191 127 32 chr15 30044702 30044765 -71335756 - MIR3 SINE MIR -130 78 10 2107 106 0 3 chr15 30045511 30045826 -71334695 + AluSx SINE Alu 1 314 0 4488 184 13 30 chr15 30045830 30046746 -71333775 - Tigger1 DNA MER2_type -357 2061 1161 2432 93 3 0 chr15 30047648 30047959 -71332562 - AluSx SINE Alu 0 312 1 877 270 40 29 chr15 30048014 30048292 -71332229 + ERVL LTR ERVL 4873 5153 -611 185 397 0 0 chr15 30048447 30048525 -71331996 + L2 LINE L2 3220 3297 -16 23 0 0 0 chr15 30048694 30048717 -71331804 + AT_rich Low_complexity Low_complexity 1 23 0 707 312 119 0 chr15 30048902 30049171 -71331350 + LTR33A LTR ERVL 223 523 0 21 0 0 0 chr15 30049599 30049620 -71330901 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr15 30049900 30049930 -71330591 + AT_rich Low_complexity Low_complexity 1 30 0 2280 126 0 0 chr15 30049979 30050289 -71330232 + AluSx SINE Alu 1 310 -2 787 292 18 4 chr15 30051362 30051636 -71328885 - HAL1 LINE L1 -293 2214 1937 1391 236 62 5 chr15 30051711 30052096 -71328425 - HAL1 LINE L1 -713 1794 1388 450 244 120 81 chr15 30052128 30052386 -71328135 - HAL1 LINE L1 -1882 625 358 472 219 67 55 chr15 30052395 30052559 -71327962 - LTR45B LTR ERV1 0 489 324 2217 112 0 0 chr15 30053043 30053339 -71327182 - AluSx SINE Alu -16 296 1 213 39 0 0 chr15 30053376 30053402 -71327119 + (A)n Simple_repeat Simple_repeat 1 26 0 3455 208 52 12 chr15 30053404 30054617 -71325904 + L1MC4a LINE L1 4398 5656 -510 1001 236 0 58 chr15 30054632 30054945 -71325576 + L1ME1 LINE L1 5870 6164 -2 243 286 135 23 chr15 30055671 30055804 -71324717 + Charlie7 DNA MER1_type 1 148 -2464 377 274 10 10 chr15 30055841 30055943 -71324578 - MER5A DNA MER1_type -6 183 82 204 301 6 14 chr15 30056628 30056700 -71323821 + MER5B DNA MER1_type 24 107 -82 464 219 114 35 chr15 30056996 30057197 -71323324 + L1MC4a LINE L1 5855 6071 -1737 652 231 63 89 chr15 30057338 30057607 -71322914 + MIR SINE MIR 1 262 0 1023 108 0 0 chr15 30057620 30057750 -71322771 - AluJo SINE Alu -178 134 5 259 167 39 20 chr15 30058582 30058633 -71321888 + Tigger4(Zombi) DNA MER2_type 1 52 -2679 191 266 62 62 chr15 30058652 30058716 -71321805 + L2 LINE L2 3227 3290 -23 22 0 0 0 chr15 30059628 30059650 -71320871 + AT_rich Low_complexity Low_complexity 1 22 0 330 360 32 8 chr15 30059947 30060072 -71320449 + L2 LINE L2 3143 3270 -2 3515 148 36 8 chr15 30060523 30061133 -71319388 + L1MB8 LINE L1 5552 6178 0 290 230 56 56 chr15 30062874 30063000 -71317521 + L2 LINE L2 3124 3249 -64 1624 187 0 0 chr15 30063142 30063415 -71317106 + AluJb SINE Alu 40 312 0 762 254 243 6 chr15 30064799 30065141 -71315380 + L2 LINE L2 2863 3285 -28 381 311 85 12 chr15 30065905 30066069 -71314452 - MIR SINE MIR -64 198 23 2249 66 42 7 chr15 30066138 30066424 -71314097 + AluY SINE Alu 1 296 -15 215 175 0 0 chr15 30067438 30067478 -71313043 + MIR SINE MIR 153 192 -70 467 316 101 5 chr15 30068251 30068460 -71312061 + L3 LINE CR1 1347 1575 -2 206 286 0 0 chr15 30068764 30068806 -71311715 + polypurine Low_complexity Low_complexity 6 47 0 555 264 80 10 chr15 30068916 30069117 -71311404 - MIR SINE MIR -18 244 30 204 345 0 0 chr15 30069093 30069151 -71311370 + L2 LINE L2 3215 3272 0 * 204 40 0 0 chr15 30070286 30070311 -71310210 + (CA)n Simple_repeat Simple_repeat 2 26 0 621 227 0 8 chr15 30070363 30070482 -71310039 + FLAM_C SINE Alu 1 118 -15 180 0 0 0 chr15 30070487 30070507 -71310014 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 469 271 115 71 chr15 30070658 30070926 -71309595 + L1ME4a LINE L1 5561 5816 -305 1891 154 17 0 chr15 30070926 30071219 -71309302 - AluSx SINE Alu -14 298 1 469 271 115 71 chr15 30071219 30071444 -71309077 + L1ME4a LINE L1 5816 6076 -45 204 261 0 0 chr15 30072092 30072138 -71308383 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2382 70 3 7 chr15 30072265 30072564 -71307957 - AluY SINE Alu -13 298 1 181 191 127 32 chr15 30073310 30073373 -71307148 + MIR3 SINE MIR 10 78 -130 239 306 57 64 chr15 30073936 30074093 -71306428 + MIR SINE MIR 88 243 -19 850 210 6 25 chr15 30074797 30074959 -71305562 + AluJb SINE Alu 136 294 -18 270 0 0 0 chr15 30075731 30075761 -71304760 + (A)n Simple_repeat Simple_repeat 1 30 0 297 0 0 0 chr15 30075761 30075794 -71304727 + (TA)n Simple_repeat Simple_repeat 2 34 0 * 414 0 0 0 chr15 30075793 30075839 -71304682 + (GA)n Simple_repeat Simple_repeat 2 47 0 309 300 0 0 chr15 30077278 30077358 -71303163 - MER5B DNA MER1_type -50 128 49 363 286 7 50 chr15 30077522 30077662 -71302859 - MER94 DNA DNA 0 134 1 2126 114 51 102 chr15 30077694 30078105 -71302416 + MLT1B LTR MaLR 1 390 0 201 347 13 53 chr15 30078485 30078635 -71301886 - L2 LINE L2 -181 3091 2948 283 343 17 41 chr15 30078715 30078887 -71301634 - L3b LINE CR1 -237 1346 1179 214 256 0 0 chr15 30078937 30078980 -71301541 + (CA)n Simple_repeat Simple_repeat 2 44 0 961 226 67 0 chr15 30079893 30080088 -71300433 - MER3 DNA MER1_type -1 208 1 186 103 0 0 chr15 30080916 30080945 -71299576 + (TG)n Simple_repeat Simple_repeat 2 30 0 261 0 0 0 chr15 30081497 30081526 -71298995 + (A)n Simple_repeat Simple_repeat 1 29 0 322 359 8 15 chr15 30086906 30087037 -71293484 + MER5B DNA MER1_type 12 141 -37 210 373 59 13 chr15 30087083 30087236 -71293285 - MIR3 SINE MIR -16 192 33 882 227 6 17 chr15 30090228 30090404 -71290117 + MER5B DNA MER1_type 2 175 -3 659 281 108 67 chr15 30091510 30092165 -71288356 - L2 LINE L2 0 3313 2631 15264 136 22 26 chr15 30092202 30092314 -71288207 - Tigger1 DNA MER2_type 0 2418 2307 1649 181 7 0 chr15 30092314 30092628 -71287893 + AluJo SINE Alu 1 316 0 15264 136 22 26 chr15 30092628 30092879 -71287642 - Tigger1 DNA MER2_type -111 2307 2057 2092 115 0 7 chr15 30092879 30093195 -71287326 + AluSx SINE Alu 1 314 0 15264 136 22 26 chr15 30093195 30094671 -71285850 - Tigger1 DNA MER2_type -361 2057 585 2282 77 0 17 chr15 30094671 30094970 -71285551 - AluSc SINE Alu -15 294 1 15264 136 22 26 chr15 30094970 30095553 -71284968 - Tigger1 DNA MER2_type -1833 585 1 306 259 118 15 chr15 30096185 30096320 -71284201 + MARNA DNA Mariner 134 282 -304 473 277 54 12 chr15 30096495 30096661 -71283860 + MARNA DNA Mariner 307 479 -107 2815 13 0 0 chr15 30096932 30097238 -71283283 - AluYb8 SINE Alu -12 306 1 811 278 18 21 chr15 30097811 30098272 -71282249 + LTR33 LTR ERVL 12 521 0 191 325 192 35 chr15 30098632 30098835 -71281686 + L2 LINE L2 2810 3044 -269 539 312 102 59 chr15 30098974 30099664 -71280857 + L2 LINE L2 2538 3267 -5 1131 160 29 29 chr15 30099857 30100063 -71280458 - L1PB4 LINE L1 -1 6155 5950 416 260 203 20 chr15 30100095 30100284 -71280237 + MIR SINE MIR 34 255 -7 298 330 10 7 chr15 30100445 30100570 -71279951 - MIR SINE MIR -63 145 25 869 268 48 36 chr15 30100690 30101104 -71279417 - HAL1 LINE L1 -231 2276 1858 1934 246 154 58 chr15 30101122 30102019 -71278502 - HAL1 LINE L1 -766 1741 759 762 176 52 7 chr15 30102050 30102203 -71278318 + MER20 DNA MER1_type 58 217 -2 1346 303 30 15 chr15 30102240 30102878 -71277643 - HAL1 LINE L1 -1790 717 1 380 157 29 0 chr15 30104464 30104534 -71275987 - MLT1A2 LTR MaLR -4 370 299 563 239 113 50 chr15 30106017 30106239 -71274282 + L1ME2 LINE L1 5920 6155 -9 1918 183 133 14 chr15 30106385 30106828 -71273693 + LTR54B LTR ERV1 1 496 -2 737 181 10 57 chr15 30106989 30107182 -71273339 + L1MB8 LINE L1 5992 6175 -3 1113 123 13 0 chr15 30107486 30107681 -71272840 - AluSg/x SINE Alu 0 322 126 2094 96 23 23 chr15 30107683 30107984 -71272537 - AluSx SINE Alu -11 301 1 335 281 144 0 chr15 30108089 30108228 -71272293 - MLT1I LTR MaLR -6 403 245 1685 158 3 50 chr15 30108269 30108586 -71271935 - AluJb SINE Alu 0 312 11 27 0 0 0 chr15 30108659 30108686 -71271835 + AT_rich Low_complexity Low_complexity 1 27 0 356 237 20 13 chr15 30109440 30109592 -71270929 + (TA)n Simple_repeat Simple_repeat 1 153 0 8823 164 27 15 chr15 30109699 30112240 -71268281 - L1PA16 LINE L1 -11 6155 3586 2952 161 51 0 chr15 30112260 30112768 -71267753 + LTR51 LTR ERV1 138 671 0 298 250 0 50 chr15 30113535 30113635 -71266886 + LTR67 LTR ERVL 456 550 -7 320 347 0 21 chr15 30114518 30114613 -71265908 - MIR SINE MIR -90 118 26 2779 125 49 2 chr15 30114790 30115199 -71265322 + MSTA LTR MaLR 1 428 0 234 246 46 15 chr15 30116532 30116597 -71263924 + MLT1K LTR MaLR 253 319 -269 1722 162 95 40 chr15 30116632 30116683 -71263838 - MLT1B LTR MaLR 0 390 343 3079 74 3 13 chr15 30116683 30117062 -71263459 - THE1C LTR MaLR 0 375 1 1722 162 95 40 chr15 30117062 30117380 -71263141 - MLT1B LTR MaLR -47 343 1 21 57 0 0 chr15 30117614 30117649 -71262872 + AT_rich Low_complexity Low_complexity 1 35 0 227 357 36 9 chr15 30118276 30118388 -71262133 + L2 LINE L2 3154 3268 -4 273 311 33 16 chr15 30118556 30118678 -71261843 + MIR SINE MIR 19 142 -66 22 56 0 0 chr15 30120278 30120314 -71260207 + AT_rich Low_complexity Low_complexity 1 36 0 450 0 0 0 chr15 30120851 30120901 -71259620 + (CA)n Simple_repeat Simple_repeat 1 50 0 21 57 0 0 chr15 30124975 30125010 -71255511 + GC_rich Low_complexity Low_complexity 1 35 0 315 259 9 2 chr15 30126124 30126269 -71254252 + MER5A DNA MER1_type 4 189 0 384 271 42 42 chr15 30126825 30126969 -71253552 + MIR SINE MIR 36 179 -83 226 302 266 0 chr15 30127096 30127235 -71253286 - L2 LINE L2 -1 3271 3096 1454 173 0 114 chr15 30127771 30128123 -71252398 - AluJo SINE Alu 0 312 1 522 188 10 0 chr15 30128350 30128451 -71252070 - L1MB2 LINE L1 0 6171 6070 287 306 35 12 chr15 30128559 30128644 -71251877 - MIR SINE MIR -164 98 12 257 344 10 10 chr15 30128678 30128774 -71251747 + MER5A DNA MER1_type 7 102 -87 2115 110 45 0 chr15 30129778 30130069 -71250452 - AluSx SINE Alu -6 306 3 829 141 7 30 chr15 30130677 30130812 -71249709 - AluJb SINE Alu -179 133 2 182 192 19 0 chr15 30131164 30131216 -71249305 + T-rich Low_complexity Low_complexity 2 54 0 1809 172 7 3 chr15 30131401 30131703 -71248818 + AluJb SINE Alu 1 303 -9 23 33 0 0 chr15 30132411 30132441 -71248080 + AT_rich Low_complexity Low_complexity 1 30 0 281 257 0 29 chr15 30134294 30134364 -71246157 - L2 LINE L2 0 3313 3246 219 333 0 0 chr15 30134690 30134741 -71245780 - L2 LINE L2 -5 3267 3217 202 221 263 11 chr15 30135203 30135298 -71245223 - L3b LINE CR1 -216 1367 1249 1133 308 49 39 chr15 30135744 30136361 -71244160 + L1MDa LINE L1 20 642 -5898 4896 48 17 2 chr15 30136626 30137644 -71242877 - MER11A LTR ERVK 0 1266 1 4881 203 72 53 chr15 30137692 30138304 -71242217 + L1MDa LINE L1 872 1471 -5069 1879 173 3 3 chr15 30138304 30138616 -71241905 + AluJb SINE Alu 1 312 0 4881 203 72 53 chr15 30138616 30139476 -71241045 + L1MDa LINE L1 1471 2372 -4168 1729 213 79 37 chr15 30139478 30139906 -71240615 + L1MD2 LINE L1 5902 6347 -12 637 199 128 26 chr15 30140770 30140926 -71239595 - MER5B DNA MER1_type -6 172 1 912 229 6 0 chr15 30140938 30141113 -71239408 - MER5A DNA MER1_type -4 185 10 308 328 38 8 chr15 30141236 30141367 -71239154 + MIR SINE MIR 43 177 -85 1914 125 0 0 chr15 30141391 30141647 -71238874 - AluSx SINE Alu -55 257 2 714 244 88 19 chr15 30141677 30141882 -71238639 - MIR SINE MIR -41 221 3 261 298 161 37 chr15 30142039 30142200 -71238321 + MER5A DNA MER1_type 1 181 -8 2923 141 50 23 chr15 30142431 30142908 -71237613 + LTR2B LTR ERV1 1 490 0 273 29 0 0 chr15 30143075 30143109 -71237412 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 312 48 0 0 chr15 30143434 30143476 -71237045 + (GA)n Simple_repeat Simple_repeat 1 42 0 533 280 74 45 chr15 30143957 30144308 -71236213 + L1ME LINE L1 921 1322 -5074 2032 135 7 0 chr15 30144308 30144597 -71235924 + AluSx SINE Alu 1 291 -21 533 280 74 45 chr15 30144597 30144763 -71235758 + L1ME LINE L1 1322 1482 -4914 1176 249 93 19 chr15 30144839 30145495 -71235026 + L1ME LINE L1 1935 2599 -3616 1668 269 98 55 chr15 30145574 30146694 -71233827 + L1ME LINE L1 2705 3872 -2343 1987 273 98 7 chr15 30146764 30147621 -71232900 + L1ME LINE L1 4602 5544 -687 216 0 0 0 chr15 30147761 30147785 -71232736 + (A)n Simple_repeat Simple_repeat 1 24 0 312 354 57 21 chr15 30149597 30149789 -71230732 - L2 LINE L2 -208 3064 2866 203 312 54 0 chr15 30150089 30150182 -71230339 + L2 LINE L2 1254 1351 -1963 1175 177 0 58 chr15 30150297 30150523 -71229998 - AluJb SINE Alu -14 298 86 529 191 118 0 chr15 30150639 30150749 -71229772 + MER63 DNA MER1_type 1 749 -87 348 296 178 20 chr15 30151179 30151331 -71229190 - MER5A DNA MER1_type 0 189 14 508 258 117 42 chr15 30151836 30152049 -71228472 + MIR SINE MIR 8 236 -26 1973 133 3 7 chr15 30152078 30152378 -71228143 + AluSx SINE Alu 1 299 -13 398 277 30 0 chr15 30152378 30152479 -71228042 + MIR SINE MIR 100 203 -59 304 334 114 82 chr15 30152699 30152999 -71227522 + L2 LINE L2 2831 3151 -121 646 207 75 17 chr15 30152999 30153173 -71227348 + MER5A DNA MER1_type 5 188 -1 304 334 114 82 chr15 30153173 30153300 -71227221 + L2 LINE L2 3151 3272 0 232 379 11 11 chr15 30153441 30153536 -71226985 - L2 LINE L2 -494 2820 2726 429 167 0 0 chr15 30155020 30155098 -71225423 + MER89 LTR ERV1 1 78 -481 * 1973 154 36 3 chr15 30155092 30155455 -71225066 + MER89 LTR ERV1 183 557 -2 275 57 0 0 chr15 30156380 30156415 -71224106 + U2 snRNA snRNA 1 35 -153 870 198 6 6 chr15 30156428 30156585 -71223936 + FRAM SINE Alu 1 157 -19 1412 61 0 0 chr15 30156901 30157082 -71223439 + L1PA8 LINE L1 5990 6170 -2 23 0 0 0 chr15 30157361 30157384 -71223137 + AT_rich Low_complexity Low_complexity 1 23 0 246 219 0 0 chr15 30157812 30157876 -71222645 + CT-rich Low_complexity Low_complexity 1 64 0 342 0 0 0 chr15 30157887 30157925 -71222596 + (CAT)n Simple_repeat Simple_repeat 1 38 0 269 273 45 40 chr15 30158766 30158942 -71221579 + L1MEd LINE L1 23 199 -5920 2440 206 54 75 chr15 30159050 30159284 -71221237 - L1ME2 LINE L1 -32 6132 5894 707 186 0 16 chr15 30159284 30159408 -71221113 + FLAM_A SINE Alu 1 122 -11 2440 206 54 75 chr15 30159408 30160074 -71220447 - L1ME2 LINE L1 -270 5894 5279 1726 151 21 7 chr15 30160074 30160359 -71220162 - AluJo SINE Alu -23 289 1 2440 206 54 75 chr15 30160359 30161011 -71219510 - L1ME2 LINE L1 -885 5279 4614 770 167 0 0 chr15 30161022 30161142 -71219379 + FLAM_C SINE Alu 5 124 -19 2447 229 40 24 chr15 30161176 30161981 -71218540 - L1ME2 LINE L1 -1540 4606 3789 2510 62 0 3 chr15 30162094 30162398 -71218123 + AluY SINE Alu 1 303 -8 1731 219 14 8 chr15 30162578 30162939 -71217582 - MLT1A1 LTR MaLR 0 365 3 7840 214 39 4 chr15 30163126 30165683 -71214838 + L1 LINE L1 2452 5120 -1026 21 0 0 0 chr15 30165789 30165810 -71214711 + AT_rich Low_complexity Low_complexity 1 21 0 2279 109 20 0 chr15 30165863 30166167 -71214354 + AluSx SINE Alu 1 310 -2 210 254 0 36 chr15 30166577 30166632 -71213889 - L3 LINE CR1 -5 1572 1520 512 309 72 45 chr15 30167608 30167831 -71212690 + MIR SINE MIR 23 251 -11 769 182 0 16 chr15 30167858 30168167 -71212354 + (CACCAT)n Simple_repeat Simple_repeat 1 304 0 497 309 99 0 chr15 30168664 30168845 -71211676 - MIR SINE MIR 0 262 64 227 267 186 23 chr15 30168971 30169143 -71211378 - L2 LINE L2 -213 3059 2860 798 145 145 27 chr15 30169670 30169856 -71210665 - MER3 DNA MER1_type 0 209 2 400 307 26 0 chr15 30170172 30170325 -71210196 + L2 LINE L2 2867 3023 -290 28 48 0 0 chr15 30171529 30171571 -71208950 + AT_rich Low_complexity Low_complexity 1 42 0 286 261 176 18 chr15 30171797 30171918 -71208603 + MIR SINE MIR 8 147 -107 261 259 37 15 chr15 30172582 30172717 -71207804 + L1MDb LINE L1 1145 1282 -5127 498 291 64 33 chr15 30172743 30172785 -71207736 + L1MDb LINE L1 1591 1630 -4957 2107 128 10 10 chr15 30172785 30173090 -71207431 + AluSx SINE Alu 1 305 -7 498 291 64 33 chr15 30173090 30173439 -71207082 + L1MDb LINE L1 1630 1994 -4593 2246 89 13 3 chr15 30173504 30173806 -71206715 + AluSq SINE Alu 1 305 -8 810 254 104 14 chr15 30173911 30174447 -71206074 + L1MDb LINE L1 2213 2774 -3632 1339 206 98 33 chr15 30174474 30174873 -71205648 + LTR40c LTR ERVL 36 460 -5 853 228 55 44 chr15 30174878 30175242 -71205279 + L1MDb LINE L1 2481 2848 -3558 375 257 125 86 chr15 30175257 30175495 -71205026 + L1MDb LINE L1 2821 3075 -3331 1613 174 15 8 chr15 30175495 30175760 -71204761 - AluJb SINE Alu -45 267 1 375 257 125 86 chr15 30175760 30175824 -71204697 + L1MDb LINE L1 3075 3135 -3271 2495 87 0 0 chr15 30175824 30176134 -71204387 - AluSx SINE Alu -2 310 1 229 111 111 0 chr15 30176157 30176202 -71204319 - L1MB5 LINE L1 -9 6165 6116 * 461 182 8 33 chr15 30176188 30176309 -71204212 - L1MB5 LINE L1 -9 6165 6048 435 188 50 0 chr15 30176324 30176425 -71204096 + L1MDb LINE L1 3148 3253 -3153 640 250 32 86 chr15 30176479 30176701 -71203820 + L1MDb LINE L1 3653 3885 -2521 207 0 0 0 chr15 30176701 30176724 -71203797 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2136 125 0 0 chr15 30176734 30177021 -71203500 + AluJb SINE Alu 21 307 -5 640 250 32 86 chr15 30177021 30177195 -71203326 + L1MDb LINE L1 3894 4038 -2368 22 35 0 0 chr15 30177213 30177242 -71203279 + AT_rich Low_complexity Low_complexity 1 29 0 1602 303 32 23 chr15 30177285 30178064 -71202457 + L1MC4a LINE L1 286 1071 -5516 917 216 13 74 chr15 30178062 30178117 -71202404 + L1MC4a LINE L1 4099 4156 -2250 * 1068 71 71 0 chr15 30178117 30178272 -71202249 + L1PA8 LINE L1 6007 6172 0 917 216 13 74 chr15 30178272 30178526 -71201995 + L1MC4a LINE L1 4156 4389 -2017 221 337 174 0 chr15 30180444 30180530 -71199991 + MIR SINE MIR 52 152 -56 195 100 0 0 chr15 30180832 30180862 -71199659 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 2122 91 14 3 chr15 30181731 30182027 -71198494 - AluSq SINE Alu -14 299 1 768 183 12 6 chr15 30182143 30182307 -71198214 + MER103 DNA DNA 1 165 -1 237 216 21 0 chr15 30183360 30183418 -71197103 - MIR SINE MIR -61 147 87 189 107 0 0 chr15 30183712 30183740 -71196781 + (A)n Simple_repeat Simple_repeat 1 28 0 188 219 244 12 chr15 30184010 30184092 -71196429 + MIR SINE MIR 45 145 -63 493 276 147 37 chr15 30185232 30185395 -71195126 - MER5A DNA MER1_type 0 189 9 293 336 67 34 chr15 30185668 30185817 -71194704 + MER5A DNA MER1_type 29 182 -7 2050 140 3 3 chr15 30187023 30187330 -71193191 + AluSx SINE Alu 1 307 -5 221 95 0 24 chr15 30187516 30187558 -71192963 + (ATTG)n Simple_repeat Simple_repeat 4 44 0 2264 93 0 0 chr15 30187558 30187838 -71192683 - AluSx SINE Alu -32 280 1 222 91 0 0 chr15 30187875 30187908 -71192613 + (A)n Simple_repeat Simple_repeat 1 33 0 3028 211 51 12 chr15 30187910 30189116 -71191405 + L1MC4a LINE L1 4667 5916 -510 883 233 0 58 chr15 30189131 30189444 -71191077 + L1ME1 LINE L1 5870 6164 -2 380 274 10 10 chr15 30190339 30190441 -71190080 - MER5A DNA MER1_type -6 183 82 202 301 6 14 chr15 30191126 30191198 -71189323 + MER5B DNA MER1_type 24 107 -82 391 234 109 30 chr15 30191494 30191695 -71188826 + L1MC4a LINE L1 6115 6331 -1737 670 231 63 89 chr15 30191836 30192105 -71188416 + MIR SINE MIR 1 262 0 1029 108 0 0 chr15 30192118 30192248 -71188273 - AluJo SINE Alu -178 134 5 240 175 0 0 chr15 30193080 30193120 -71187401 + Tigger4(Zombi) DNA MER2_type 1 40 -2691 195 266 62 62 chr15 30193150 30193214 -71187307 + L2 LINE L2 3227 3290 -23 22 0 0 0 chr15 30194128 30194150 -71186371 + AT_rich Low_complexity Low_complexity 1 22 0 342 360 32 8 chr15 30194447 30194572 -71185949 + L2 LINE L2 3143 3270 -2 3210 148 36 8 chr15 30195023 30195633 -71184888 + L1MB8 LINE L1 5552 6178 0 294 230 56 56 chr15 30197374 30197500 -71183021 + L2 LINE L2 3124 3249 -64 1651 187 0 0 chr15 30197642 30197915 -71182606 + AluJb SINE Alu 40 312 0 364 213 118 8 chr15 30198071 30198087 -71182434 - L1MA10 LINE L1 -2 6332 6317 2930 205 70 38 chr15 30198087 30198959 -71181562 - L1ME2 LINE L1 -9 6155 5256 353 154 88 33 chr15 30199058 30199149 -71181372 + MLT1L LTR MaLR 465 560 -55 26 0 0 0 chr15 30199886 30199912 -71180609 + AT_rich Low_complexity Low_complexity 1 26 0 1975 172 3 0 chr15 30200779 30201081 -71179440 + AluJb SINE Alu 1 303 -9 22 0 0 0 chr15 30201504 30201526 -71178995 + AT_rich Low_complexity Low_complexity 1 22 0 309 290 49 31 chr15 30201895 30202057 -71178464 - MARNA DNA Mariner -208 378 214 775 263 166 30 chr15 30202406 30202911 -71177610 - L1ME4a LINE L1 -65 6056 5483 22 35 0 0 chr15 30203917 30203946 -71176575 + AT_rich Low_complexity Low_complexity 1 29 0 522 299 181 45 chr15 30206007 30206509 -71174012 + L2 LINE L2 2480 3060 -212 320 277 47 98 chr15 30207514 30207662 -71172859 + MIR SINE MIR 2 131 -131 2134 129 0 3 chr15 30207662 30207965 -71172556 + AluSx SINE Alu 6 307 -5 320 277 47 98 chr15 30207965 30208090 -71172431 + MIR SINE MIR 131 261 -1 2247 102 10 0 chr15 30208303 30208596 -71171925 + AluSx SINE Alu 1 296 -16 451 219 67 55 chr15 30209080 30209244 -71171277 + LTR45B LTR ERV1 324 489 0 439 244 120 81 chr15 30209253 30209511 -71171010 + HAL1 LINE L1 358 625 -1882 1360 236 62 5 chr15 30209543 30209928 -71170593 + HAL1 LINE L1 1388 1794 -713 815 289 53 3 chr15 30209959 30210277 -71170244 + HAL1 LINE L1 1881 2214 -293 2263 126 0 0 chr15 30211350 30211660 -71168861 - AluSx SINE Alu -2 310 1 23 33 0 0 chr15 30211709 30211739 -71168782 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr15 30212018 30212039 -71168482 + AT_rich Low_complexity Low_complexity 1 21 0 488 307 80 0 chr15 30212573 30212736 -71167785 - LTR33A LTR ERVL -125 398 223 23 0 0 0 chr15 30212920 30212943 -71167578 + AT_rich Low_complexity Low_complexity 1 23 0 205 238 0 129 chr15 30213112 30213213 -71167308 - L2 LINE L2 -16 3297 3210 837 284 37 26 chr15 30213353 30213624 -71166897 - ERVL LTR ERVL -618 5146 4873 2406 93 3 0 chr15 30213679 30213990 -71166531 + AluSx SINE Alu 1 312 0 339 313 107 33 chr15 30214928 30215078 -71165443 + MER5A DNA MER1_type 1 161 -28 2315 81 0 7 chr15 30216400 30216697 -71163824 + AluY SINE Alu 5 299 -12 246 267 50 0 chr15 30216697 30216757 -71163764 + MER5C DNA MER1_type 5 67 -257 228 271 82 59 chr15 30217072 30217157 -71163364 - MIR SINE MIR -127 135 49 2181 106 0 0 chr15 30217570 30217878 -71162643 + AluSx SINE Alu 1 308 0 2067 102 20 10 chr15 30217971 30218266 -71162255 + AluSq SINE Alu 1 298 -15 923 92 0 0 chr15 30219231 30219351 -71161170 - AluSc SINE Alu -17 292 173 2044 149 8 37 chr15 30222152 30222528 -71157993 - MER47A DNA MER2_type 0 366 2 1293 202 40 53 chr15 30222637 30223072 -71157449 - LTR10B LTR ERV1 0 547 76 414 0 0 0 chr15 30223162 30223208 -71157313 + (CA)n Simple_repeat Simple_repeat 1 46 0 3223 228 52 36 chr15 30223403 30224437 -71156084 + L1MDa LINE L1 1320 2336 -4204 1968 131 26 10 chr15 30224437 30224742 -71155779 + AluSx SINE Alu 1 310 -2 306 0 0 0 chr15 30224742 30224776 -71155745 + (TA)n Simple_repeat Simple_repeat 2 35 0 3223 228 52 36 chr15 30224776 30225663 -71154858 + L1MDa LINE L1 2335 3277 -3263 701 196 21 93 chr15 30225663 30225801 -71154720 - MER58B DNA MER1_type -2079 341 219 632 117 45 0 chr15 30225801 30225912 -71154609 + L1MA6 LINE L1 6185 6300 0 701 196 21 93 chr15 30225912 30225967 -71154554 - MER58B DNA MER1_type -2201 219 162 2147 109 0 3 chr15 30226120 30226432 -71154089 + AluSq SINE Alu 1 311 0 2216 59 4 0 chr15 30228158 30228429 -71152092 + AluY SINE Alu 1 272 -39 2315 55 3 29 chr15 30228440 30228751 -71151770 + AluY SINE Alu 1 303 -8 28 38 0 19 chr15 30228917 30228945 -71151576 + AT_rich Low_complexity Low_complexity 1 29 -23 1656 171 29 7 chr15 30228945 30229225 -71151296 - AluJo SINE Alu -26 286 1 28 38 0 19 chr15 30229225 30229249 -71151272 + AT_rich Low_complexity Low_complexity 29 52 0 1638 201 3 3 chr15 30229448 30229747 -71150774 - AluJo SINE Alu -13 299 1 199 363 128 20 chr15 30232134 30232236 -71148285 + L2 LINE L2 3160 3272 0 1221 286 154 31 chr15 30232353 30233139 -71147382 - L2 LINE L2 -1 3312 2420 243 345 78 9 chr15 30234332 30234448 -71146073 + L2 LINE L2 3186 3309 -4 271 294 123 59 chr15 30235007 30235211 -71145310 - MER20 DNA MER1_type 0 219 3 1585 121 13 0 chr15 30235383 30235607 -71144914 + AluSg/x SINE Alu 75 301 -11 1589 155 34 11 chr15 30235651 30235916 -71144605 + AluSx SINE Alu 3 273 -39 2153 75 50 4 chr15 30237724 30238003 -71142518 + AluSg1 SINE Alu 1 292 -17 5279 154 59 20 chr15 30240230 30241817 -71138704 - L1MA9 LINE L1 -3 6309 4663 496 245 7 27 chr15 30241814 30241961 -71138560 - L1M4c LINE L1 -4605 1779 1636 * 733 233 48 24 chr15 30242576 30242786 -71137735 - L1MB8 LINE L1 -1 6177 5963 28 0 0 0 chr15 30243121 30243149 -71137372 + AT_rich Low_complexity Low_complexity 1 28 0 2103 86 57 4 chr15 30244764 30245044 -71135477 - AluSg SINE Alu -15 295 1 2336 83 3 3 chr15 30245218 30245518 -71135003 + AluSq SINE Alu 1 300 -13 795 202 72 69 chr15 30246117 30246463 -71134058 + L1MC5 LINE L1 7147 7493 -468 487 265 105 7 chr15 30246815 30247143 -71133378 - MARNA DNA Mariner -43 543 166 1846 159 3 3 chr15 30247255 30247557 -71132964 + AluJo SINE Alu 1 302 -10 434 258 74 74 chr15 30248196 30248425 -71132096 + MIR SINE MIR 26 254 -8 2437 100 0 0 chr15 30248605 30248915 -71131606 + AluSx SINE Alu 3 312 0 1913 136 4 4 chr15 30249262 30249541 -71130980 + AluSx SINE Alu 1 279 -33 221 73 0 24 chr15 30249543 30249584 -71130937 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2364 60 0 0 chr15 30250323 30250636 -71129885 + AluY SINE Alu 1 313 0 536 132 44 26 chr15 30250648 30250762 -71129759 + Charlie1 DNA MER1_type 1566 1681 -1080 855 178 8 97 chr15 30250767 30250804 -71129717 + Charlie1 DNA MER1_type 1783 1822 -939 2362 84 7 0 chr15 30250804 30251100 -71129421 + AluSg SINE Alu 3 300 -10 855 178 8 97 chr15 30251100 30251309 -71129212 + Charlie1 DNA MER1_type 1822 2007 -754 3185 201 57 36 chr15 30251313 30251456 -71129065 - L1ME1 LINE L1 -122 6044 5905 2020 140 3 3 chr15 30251456 30251756 -71128765 - AluJb SINE Alu -10 302 3 3185 201 57 36 chr15 30251756 30252196 -71128325 - L1ME1 LINE L1 -261 5905 5476 1221 182 190 8 chr15 30252196 30252454 -71128067 - AluSx SINE Alu -7 305 1 3185 201 57 36 chr15 30252454 30252637 -71127884 - L1ME1 LINE L1 -690 5476 5298 1750 164 46 3 chr15 30252637 30252961 -71127560 + MER44D DNA MER2_type 2 609 0 3185 201 57 36 chr15 30252961 30253686 -71126835 - L1ME1 LINE L1 -868 5298 4519 1651 162 99 48 chr15 30253740 30254082 -71126439 + Charlie1 DNA MER1_type 2229 2603 -158 2361 88 3 0 chr15 30254082 30254377 -71126144 - AluSx SINE Alu -16 296 1 1651 162 99 48 chr15 30254377 30254511 -71126010 + Charlie1 DNA MER1_type 2603 2729 -32 390 239 173 38 chr15 30254842 30255131 -71125390 + L1ME LINE L1 5319 5646 -475 2209 92 27 0 chr15 30255205 30255497 -71125024 + AluSx SINE Alu 1 300 -12 2197 48 44 0 chr15 30255533 30255842 -71124679 + AluY SINE Alu 1 321 0 555 237 158 26 chr15 30256025 30256253 -71124268 + MIR SINE MIR 5 262 0 25 99 0 0 chr15 30256800 30256881 -71123640 + AT_rich Low_complexity Low_complexity 1 81 0 6251 76 9 0 chr15 30257879 30259285 -71121236 - L1PA8A LINE L1 -13 6118 4704 2645 41 0 13 chr15 30260467 30260782 -71119739 - AluY SINE Alu 0 311 1 23 33 0 0 chr15 30260985 30261015 -71119506 + AT_rich Low_complexity Low_complexity 1 30 0 1897 129 6 28 chr15 30261173 30261490 -71119031 + AluSx SINE Alu 2 311 -1 1973 140 23 3 chr15 30262324 30262624 -71117897 + AluSx SINE Alu 1 306 -6 310 241 205 36 chr15 30262823 30262935 -71117586 - MIR3 SINE MIR -48 160 30 22 56 0 0 chr15 30263106 30263142 -71117379 + AT_rich Low_complexity Low_complexity 1 36 0 1854 139 0 46 chr15 30263476 30263831 -71116690 + AluJb SINE Alu 1 340 0 183 42 0 0 chr15 30263855 30263879 -71116642 + (TATTG)n Simple_repeat Simple_repeat 2 25 0 26 82 0 0 chr15 30263879 30263940 -71116581 + AT_rich Low_complexity Low_complexity 1 61 0 206 147 88 0 chr15 30263957 30264025 -71116496 + (TA)n Simple_repeat Simple_repeat 2 75 0 422 274 89 19 chr15 30265286 30265443 -71115078 - MIR3 SINE MIR -1 207 40 2320 104 0 0 chr15 30266080 30266378 -71114143 + AluSx SINE Alu 1 298 -14 2187 94 42 0 chr15 30266682 30266969 -71113552 - AluY SINE Alu -10 301 3 52 36 0 12 chr15 30267230 30267249 -71113272 + AT_rich Low_complexity Low_complexity 1 19 -64 2264 103 0 0 chr15 30267249 30267540 -71112981 + AluSx SINE Alu 1 291 -21 52 36 0 12 chr15 30267540 30267604 -71112917 + AT_rich Low_complexity Low_complexity 19 83 0 224 323 21 10 chr15 30267764 30267860 -71112661 + L2 LINE L2 3176 3272 0 2184 121 3 0 chr15 30267899 30268204 -71112317 + AluSx SINE Alu 1 306 -6 2177 123 0 0 chr15 30268706 30269014 -71111507 - AluSg SINE Alu -2 308 1 525 274 172 28 chr15 30269414 30269629 -71110892 - MIR SINE MIR -8 254 9 2230 94 7 7 chr15 30269895 30270193 -71110328 + AluSp SINE Alu 1 298 -15 2814 197 34 13 chr15 30271892 30272507 -71108014 - MER82 DNA MER2_type -3 650 23 359 0 43 0 chr15 30273092 30273138 -71107383 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 458 295 66 72 chr15 30274785 30275134 -71105387 + L2 LINE L2 2212 2558 -756 191 283 19 0 chr15 30275152 30275205 -71105316 + L2 LINE L2 2686 2739 -575 2231 115 0 3 chr15 30275636 30275940 -71104581 + AluSq SINE Alu 1 303 -10 6292 61 53 31 chr15 30276293 30277474 -71103047 + SVA Other Other 430 1440 0 1736 189 10 0 chr15 30277533 30277830 -71102691 - AluJo SINE Alu -12 300 1 1948 103 58 34 chr15 30278414 30278706 -71101815 + AluSx SINE Alu 1 299 -13 1940 104 7 15 chr15 30278885 30279155 -71101366 - AluSp SINE Alu -13 300 33 2478 97 0 0 chr15 30279275 30279584 -71100937 - AluSc SINE Alu 0 309 1 640 320 24 29 chr15 30279584 30280075 -71100446 - L1MEd LINE L1 -5042 1077 589 207 226 75 0 chr15 30280172 30280225 -71100296 - MIR SINE MIR -128 134 78 2386 77 10 0 chr15 30280588 30280885 -71099636 + AluSc SINE Alu 1 300 -9 310 276 164 0 chr15 30281080 30281196 -71099325 + MIR SINE MIR 110 244 -18 490 280 192 10 chr15 30281357 30281550 -71098971 + MIR SINE MIR 3 230 -32 194 356 26 26 chr15 30283035 30283103 -71097418 + MIR SINE MIR 29 99 -163 2045 146 0 7 chr15 30283103 30283412 -71097109 - AluSx SINE Alu -4 308 2 194 356 26 26 chr15 30283412 30283458 -71097063 + MIR SINE MIR 98 143 -119 2008 163 3 3 chr15 30283508 30283803 -71096718 - AluJb SINE Alu -17 295 1 1980 137 7 3 chr15 30284038 30284338 -71096183 + AluSx SINE Alu 1 301 -11 287 256 39 0 chr15 30284418 30284496 -71096025 - MIR SINE MIR -7 255 175 2277 94 3 3 chr15 30284823 30285122 -71095399 + AluSq SINE Alu 2 300 -13 322 123 0 55 chr15 30285123 30285196 -71095325 + L1ME3A LINE L1 5882 5950 -220 2245 97 0 7 chr15 30285565 30285865 -71094656 + AluSq SINE Alu 1 298 -15 180 0 0 0 chr15 30285893 30285913 -71094608 + (A)n Simple_repeat Simple_repeat 1 20 0 756 199 52 62 chr15 30285913 30286124 -71094397 + MIR SINE MIR 36 244 -18 1613 89 5 0 chr15 30286354 30286557 -71093964 - AluSg/x SINE Alu -13 297 94 2287 82 20 0 chr15 30286620 30286944 -71093577 + AluSp SINE Alu 1 330 0 190 0 0 0 chr15 30286923 30287024 -71093497 + (TAA)n Simple_repeat Simple_repeat 1 101 0 2428 54 7 0 chr15 30287123 30287418 -71093103 + AluY SINE Alu 1 297 -14 1577 185 7 11 chr15 30287428 30287709 -71092812 + AluJb SINE Alu 1 280 -32 227 325 175 0 chr15 30288040 30288166 -71092355 + L2 LINE L2 3016 3163 -150 213 151 0 0 chr15 30288168 30288221 -71092300 + (TA)n Simple_repeat Simple_repeat 2 54 0 401 356 7 22 chr15 30288221 30288356 -71092165 + L2 LINE L2 3117 3249 -23 1749 184 0 16 chr15 30288359 30288663 -71091858 - AluJb SINE Alu -13 299 1 562 343 93 8 chr15 30288663 30289054 -71091467 + L2 LINE L2 2250 2674 -640 855 146 15 0 chr15 30289055 30289185 -71091336 + AluSq/x SINE Alu 2 133 -179 2405 81 0 13 chr15 30290525 30290833 -71089688 + AluSc SINE Alu 1 304 -5 519 324 36 9 chr15 30290880 30291102 -71089419 + MIR SINE MIR 20 247 -15 1825 172 7 3 chr15 30291220 30291517 -71089004 - AluJb SINE Alu -14 298 1 2276 112 0 3 chr15 30291682 30291987 -71088534 + AluSx SINE Alu 1 304 -8 1425 215 11 18 chr15 30292190 30292474 -71088047 - AluJo SINE Alu -30 282 1 266 297 0 43 chr15 30292709 30292847 -71087674 + L1ME4a LINE L1 5648 5779 -342 2450 70 3 0 chr15 30292857 30293157 -71087364 - AluY SINE Alu -10 301 1 320 223 146 8 chr15 30293174 30293304 -71087217 + L1ME4a LINE L1 5970 6117 -4 22 0 0 0 chr15 30293331 30293353 -71087168 + AT_rich Low_complexity Low_complexity 1 22 0 259 333 26 0 chr15 30293798 30293876 -71086645 - MIR SINE MIR -75 133 54 211 220 40 0 chr15 30294205 30294255 -71086266 + L2 LINE L2 3221 3272 0 2242 114 0 0 chr15 30294584 30294883 -71085638 + AluSx SINE Alu 1 299 -13 289 313 84 113 chr15 30295546 30295891 -71084630 + L2 LINE L2 2938 3272 0 199 256 183 0 chr15 30295972 30296054 -71084467 - L2 LINE L2 -12 3301 3205 2386 71 6 56 chr15 30296065 30296389 -71084132 - AluSp SINE Alu -5 308 1 560 278 229 4 chr15 30296405 30296650 -71083871 + L2 LINE L2 2917 3216 -97 2369 85 3 0 chr15 30297003 30297308 -71083213 - AluSp SINE Alu -7 306 1 359 188 184 0 chr15 30297323 30297430 -71083091 + FLAM_A SINE Alu 21 127 -6 2506 33 0 20 chr15 30297451 30297753 -71082768 - AluY SINE Alu -15 296 1 287 357 161 11 chr15 30297753 30298033 -71082488 - L2 LINE L2 -559 2755 2434 414 283 53 78 chr15 30298340 30298623 -71081898 + L2 LINE L2 2996 3271 -1 185 0 40 0 chr15 30299235 30299260 -71081261 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2070 101 0 4 chr15 30299312 30299589 -71080932 - AluSp SINE Alu -17 296 21 1977 119 26 0 chr15 30299631 30299934 -71080587 + AluSx SINE Alu 1 311 -1 2793 207 54 58 chr15 30299934 30300462 -71080059 - L1ME1 LINE L1 -17 6149 5621 2110 111 0 4 chr15 30300462 30300766 -71079755 - AluSg SINE Alu 0 304 2 2793 207 54 58 chr15 30300766 30300886 -71079635 - L1ME1 LINE L1 -545 5621 5502 1437 97 29 0 chr15 30300886 30301093 -71079428 - L1PA12 LINE L1 0 6168 5956 2793 207 54 58 chr15 30301093 30301120 -71079401 - L1ME1 LINE L1 -664 5502 5476 2249 77 0 14 chr15 30301120 30301434 -71079087 - AluSx SINE Alu 0 310 1 2793 207 54 58 chr15 30301434 30301622 -71078899 - L1ME1 LINE L1 -690 5476 5285 2124 108 23 10 chr15 30301854 30302161 -71078360 + AluY SINE Alu 1 311 0 2317 80 0 3 chr15 30302173 30302500 -71078021 + AluSq SINE Alu 1 326 0 2314 107 0 0 chr15 30303353 30303652 -71076869 + AluSx SINE Alu 1 299 -13 259 342 25 0 chr15 30303927 30304047 -71076474 - L2 LINE L2 -1300 2014 1892 21 0 0 0 chr15 30355615 30355636 -71024885 + AT_rich Low_complexity Low_complexity 1 21 0 315 289 41 8 chr15 30355773 30355894 -71024627 + MIR SINE MIR 77 201 -61 197 280 0 0 chr15 30356592 30356642 -71023879 + L2 LINE L2 3264 3313 0 239 240 0 0 chr15 30357475 30357525 -71022996 - Alu SINE Alu -118 185 136 2546 61 0 0 chr15 30358337 30358648 -71021873 + AluY SINE Alu 1 311 0 192 179 0 0 chr15 30358970 30359009 -71021512 + (TTGGGG)n Simple_repeat Simple_repeat 3 41 0 203 244 0 0 chr15 30359108 30359153 -71021368 - L2 LINE L2 -1 3312 3268 212 313 25 0 chr15 30359236 30359316 -71021205 - L2 LINE L2 -234 3038 2957 1835 117 4 8 chr15 30360121 30360387 -71020134 + AluSp SINE Alu 47 311 -2 1158 249 41 68 chr15 30360417 30360855 -71019666 + MER34 LTR ERV1 1 426 -116 2285 103 0 3 chr15 30360882 30361182 -71019339 - AluSg SINE Alu -11 299 1 1779 100 123 4 chr15 30361692 30361952 -71018569 - AluSx SINE Alu -21 291 1 801 172 0 0 chr15 30361994 30362122 -71018399 - FLAM_C SINE Alu -5 128 1 2254 109 0 0 chr15 30362154 30362448 -71018073 + AluSg SINE Alu 1 294 -16 2025 128 19 47 chr15 30362521 30362840 -71017681 + AluSx SINE Alu 1 310 -2 2303 91 3 38 chr15 30362849 30363169 -71017352 + AluSc SINE Alu 1 309 0 2382 64 0 0 chr15 30363170 30363453 -71017068 + AluY SINE Alu 1 283 -28 189 25 25 50 chr15 30363459 30363499 -71017022 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 456 62 0 0 chr15 30363728 30363792 -71016729 + (TC)n Simple_repeat Simple_repeat 1 64 0 224 278 163 0 chr15 30363986 30364137 -71016384 + MIR3 SINE MIR 28 202 -6 736 314 81 50 chr15 30364317 30364674 -71015847 + MER115 DNA AcHobo 1 368 -325 605 252 0 14 chr15 30365481 30365620 -71014901 + MIR3 SINE MIR 71 207 -1 1684 201 40 23 chr15 30366102 30366456 -71014065 - MLT1A1 LTR MaLR -2 363 4 2293 105 0 0 chr15 30366844 30367139 -71013382 + AluSg SINE Alu 1 295 -15 2228 102 0 0 chr15 30367150 30367434 -71013087 + AluSg SINE Alu 1 284 -26 2014 103 0 0 chr15 30367544 30367797 -71012724 - AluSc SINE Alu -56 253 1 208 280 0 0 chr15 30367964 30368014 -71012507 + L2 LINE L2 3220 3269 -3 2455 88 3 0 chr15 30368389 30368696 -71011825 - AluSp SINE Alu -5 308 1 36 23 0 0 chr15 30368939 30368982 -71011539 + AT_rich Low_complexity Low_complexity 1 43 0 2254 91 6 63 chr15 30369005 30369336 -71011185 - AluSx SINE Alu 0 312 1 296 258 126 44 chr15 30369541 30369723 -71010798 + MIR SINE MIR 66 262 0 1141 128 16 5 chr15 30369894 30370082 -71010439 - L1MB3 LINE L1 -3 6180 5991 2241 71 0 7 chr15 30370441 30370753 -71009768 - AluSg1 SINE Alu 0 310 1 273 224 67 22 chr15 30370769 30370903 -71009618 + L1ME4a LINE L1 5767 5906 -215 21 0 0 0 chr15 30370954 30370975 -71009546 + AT_rich Low_complexity Low_complexity 1 21 0 564 197 53 58 chr15 30370999 30371187 -71009334 + L1ME4a LINE L1 5935 6121 0 1468 67 0 6 chr15 30372318 30372497 -71008024 + AluSg SINE Alu 48 225 -85 811 116 9 0 chr15 30372597 30372709 -71007812 + AluSg/x SINE Alu 191 303 -9 213 261 0 0 chr15 30372709 30372755 -71007766 + MIR SINE MIR 207 252 -10 508 259 0 0 chr15 30373127 30373235 -71007286 + L2 LINE L2 3165 3272 0 24 0 0 0 chr15 30373606 30373630 -71006891 + AT_rich Low_complexity Low_complexity 1 24 0 203 292 0 0 chr15 30373987 30374035 -71006486 + T-rich Low_complexity Low_complexity 3 50 0 478 297 29 34 chr15 30374180 30374259 -71006262 - MIR SINE MIR -88 174 96 2352 81 0 3 chr15 30374259 30374556 -71005965 + AluSc SINE Alu 1 296 -13 478 297 29 34 chr15 30374556 30374651 -71005870 - MIR SINE MIR -166 96 1 273 244 84 42 chr15 30374864 30374983 -71005538 + MIR SINE MIR 89 212 -50 264 280 53 0 chr15 30375652 30375727 -71004794 - L2 LINE L2 -44 3269 3191 192 195 24 0 chr15 30375792 30375833 -71004688 + L2 LINE L2 3231 3272 0 2594 74 0 0 chr15 30375958 30376267 -71004254 - AluSg SINE Alu -1 309 1 226 283 19 0 chr15 30376272 30376325 -71004196 - L2 LINE L2 -16 3256 3203 2284 102 0 7 chr15 30376940 30377243 -71003278 - AluSg SINE Alu 0 310 10 23 0 0 0 chr15 30377359 30377382 -71003139 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr15 30378728 30378757 -71001764 + AT_rich Low_complexity Low_complexity 1 29 0 1211 83 6 0 chr15 30378762 30378918 -71001603 - AluSg/x SINE Alu -19 293 137 906 151 40 0 chr15 30379076 30379228 -71001293 - MER4B LTR ERV1 -452 158 1 882 243 94 72 chr15 30379234 30379630 -71000891 - L2 LINE L2 -10 3303 2881 2010 93 70 36 chr15 30379630 30379932 -71000589 + AluSx SINE Alu 1 312 0 882 243 94 72 chr15 30379932 30380114 -71000407 - L2 LINE L2 -432 2881 2705 209 0 98 0 chr15 30380121 30380162 -71000359 + (TA)n Simple_repeat Simple_repeat 1 45 0 1654 182 3 17 chr15 30380162 30380459 -71000062 - AluJo SINE Alu -19 293 1 1187 285 131 36 chr15 30380516 30380554 -70999967 + MLT2F LTR ERVL 5 38 -625 2369 65 0 0 chr15 30380554 30380872 -70999649 - AluSc SINE Alu 0 318 1 1187 285 131 36 chr15 30380872 30381380 -70999141 + MLT2F LTR ERVL 38 604 -59 455 96 12 0 chr15 30381381 30381464 -70999057 + (TA)n Simple_repeat Simple_repeat 1 84 0 224 248 47 8 chr15 30381487 30381616 -70998905 + (TA)n Simple_repeat Simple_repeat 2 135 0 1543 88 5 0 chr15 30381616 30381810 -70998711 - AluSx SINE Alu -117 195 1 250 94 94 19 chr15 30381961 30382014 -70998507 - MLT2B1 LTR ERVL 0 520 464 201 158 0 0 chr15 30382035 30382073 -70998448 + (TA)n Simple_repeat Simple_repeat 2 39 0 388 121 12 24 chr15 30382084 30382124 -70998397 + (GGAA)n Simple_repeat Simple_repeat 2 41 -42 2177 86 23 20 chr15 30382124 30382427 -70998094 + AluSp SINE Alu 1 304 -9 388 121 12 24 chr15 30382427 30382469 -70998052 + (GGAA)n Simple_repeat Simple_repeat 41 83 0 1865 229 6 57 chr15 30382470 30382959 -70997562 - MLT2B1 LTR ERVL -56 464 1 971 173 7 0 chr15 30383010 30383160 -70997361 + MER45A DNA AcHobo 26 176 -2 301 244 181 25 chr15 30383161 30383321 -70997200 - L2 LINE L2 -814 2500 2316 620 333 16 8 chr15 30383640 30383889 -70996632 + MLT1J LTR MaLR 11 261 -250 549 222 71 0 chr15 30383951 30384077 -70996444 + MLT1J LTR MaLR 375 509 -2 1794 90 0 43 chr15 30384886 30385141 -70995380 + AluSg SINE Alu 64 307 -3 477 143 12 12 chr15 30385154 30385238 -70995283 + AluSg/x SINE Alu 139 222 -88 235 393 36 0 chr15 30385358 30385470 -70995051 - L2 LINE L2 -252 3020 2905 387 274 9 18 chr15 30385588 30385701 -70994820 - LTR33 LTR ERVL 0 521 410 1894 136 27 13 chr15 30385708 30386009 -70994512 + AluSx SINE Alu 4 308 -4 226 386 79 0 chr15 30386057 30386184 -70994337 - LTR33 LTR ERVL -126 395 259 576 246 8 0 chr15 30386243 30386377 -70994144 - LTR33 LTR ERVL -374 147 13 675 291 38 8 chr15 30386394 30386631 -70993890 + MER46C DNA MER2_type 95 338 0 189 290 62 25 chr15 30386720 30386882 -70993639 - L2 LINE L2 -464 2850 2683 526 241 87 104 chr15 30387364 30387605 -70992916 + MER57B LTR ERV1 1 260 -166 257 91 0 109 chr15 30387634 30387673 -70992848 + MER57A LTR ERV1 349 382 -21 2099 120 3 20 chr15 30387673 30387972 -70992549 - AluSx SINE Alu -16 296 3 257 91 0 109 chr15 30387972 30387987 -70992534 + MER57A LTR ERV1 382 397 -6 2296 113 0 0 chr15 30388602 30388902 -70991619 - AluSx SINE Alu -12 300 1 2276 95 30 0 chr15 30388906 30389210 -70991311 - AluSp SINE Alu 0 313 1 2348 99 0 3 chr15 30389213 30389517 -70991004 - AluSg SINE Alu -7 303 1 36 0 0 0 chr15 30389520 30389556 -70990965 + AT_rich Low_complexity Low_complexity 1 36 0 223 250 55 23 chr15 30389610 30389738 -70990783 + (TA)n Simple_repeat Simple_repeat 2 133 0 700 250 64 0 chr15 30389773 30389929 -70990592 - FRAM SINE Alu 0 166 1 2522 75 0 0 chr15 30390073 30390380 -70990141 - AluY SINE Alu -4 307 1 783 231 72 56 chr15 30390874 30391125 -70989396 + MIR SINE MIR 3 257 -5 1987 146 6 16 chr15 30391366 30391681 -70988840 + AluSq SINE Alu 1 312 -1 2125 117 30 0 chr15 30391861 30392159 -70988362 + AluSq SINE Alu 1 307 -6 2018 128 35 0 chr15 30392201 30392491 -70988030 + AluSx SINE Alu 1 300 -12 2344 54 0 4 chr15 30392747 30393055 -70987466 + AluY SINE Alu 6 312 0 942 88 0 19 chr15 30393685 30393844 -70986677 + (TCC)n Simple_repeat Simple_repeat 1 156 0 183 80 0 0 chr15 30393867 30393892 -70986629 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 238 274 71 36 chr15 30393896 30393980 -70986541 - MIR SINE MIR -162 100 14 266 304 20 49 chr15 30394010 30394112 -70986409 - MER5A DNA MER1_type -25 164 66 2244 106 0 10 chr15 30394381 30394683 -70985838 + AluSg SINE Alu 6 304 -6 2429 59 0 29 chr15 30394970 30395276 -70985245 + AluY SINE Alu 1 297 -14 436 312 53 70 chr15 30395378 30395679 -70984842 + L2 LINE L2 2915 3210 -62 232 36 0 0 chr15 30396538 30396566 -70983955 + MER53 DNA DNA 1 28 -161 1714 68 5 0 chr15 30396603 30396808 -70983713 + AluSq SINE Alu 1 206 -107 1127 202 135 45 chr15 30396820 30397265 -70983256 - L1MC5 LINE L1 -308 7653 7169 2174 109 0 16 chr15 30397269 30397573 -70982948 - AluY SINE Alu -12 299 1 180 0 0 0 chr15 30397622 30397642 -70982879 + (TG)n Simple_repeat Simple_repeat 2 21 0 845 108 17 0 chr15 30397642 30397762 -70982759 - AluSq/x SINE Alu -190 122 1 25 0 0 0 chr15 30397785 30397810 -70982711 + AT_rich Low_complexity Low_complexity 1 25 0 343 151 0 0 chr15 30397817 30397870 -70982651 - MER66A LTR ERV1 -138 340 288 342 190 0 0 chr15 30397886 30397944 -70982577 - L1MC5 LINE L1 -845 7116 7059 812 268 109 58 chr15 30397956 30398285 -70982236 - LTR16A LTR ERVL -13 437 92 2521 90 3 0 chr15 30398432 30398744 -70981777 + AluSp SINE Alu 1 313 0 1385 213 92 56 chr15 30399626 30399973 -70980548 + L1MC5 LINE L1 7331 7707 -254 2462 77 0 0 chr15 30399973 30400273 -70980248 - AluY SINE Alu -11 300 1 1385 213 92 56 chr15 30400273 30400492 -70980029 + L1MC5 LINE L1 7707 7917 -44 299 311 0 25 chr15 30400992 30401111 -70979410 + CT-rich Low_complexity Low_complexity 1 116 0 1913 118 97 0 chr15 30401405 30401684 -70978837 + AluSx SINE Alu 3 308 -4 1104 238 116 104 chr15 30401768 30402371 -70978150 + L2 LINE L2 2359 2960 -353 2509 54 0 7 chr15 30402371 30402669 -70977852 - AluY SINE Alu -15 296 1 1104 238 116 104 chr15 30402669 30402983 -70977538 + L2 LINE L2 2960 3269 -44 27 29 0 0 chr15 30403084 30403118 -70977403 + AT_rich Low_complexity Low_complexity 1 34 0 2299 104 0 0 chr15 30403449 30403757 -70976764 - AluY SINE Alu -3 308 1 186 260 125 29 chr15 30403885 30403989 -70976532 + L3b LINE CR1 1272 1385 -198 588 232 68 6 chr15 30404634 30404811 -70975710 - MIR SINE MIR 0 262 75 200 86 29 0 chr15 30405261 30405296 -70975225 + (CAA)n Simple_repeat Simple_repeat 1 36 0 2069 117 0 26 chr15 30405437 30405744 -70974777 - AluSg SINE Alu -11 299 1 2627 62 0 0 chr15 30405755 30406064 -70974457 - AluSc SINE Alu 0 309 1 1351 232 113 41 chr15 30406231 30406743 -70973778 - MLT1H LTR MaLR 0 549 1 1882 94 0 0 chr15 30407226 30407470 -70973051 + AluY SINE Alu 63 306 -5 583 242 66 28 chr15 30408454 30408636 -70971885 + MIR SINE MIR 74 262 0 2307 112 3 0 chr15 30408653 30408957 -70971564 + AluSp SINE Alu 1 305 -8 37 39 0 0 chr15 30409084 30409135 -70971386 + AT_rich Low_complexity Low_complexity 1 51 0 2572 80 0 0 chr15 30409384 30409695 -70970826 + AluY SINE Alu 1 311 0 22 70 0 0 chr15 30410012 30410055 -70970466 + AT_rich Low_complexity Low_complexity 1 43 0 2833 16 0 0 chr15 30411071 30411377 -70969144 + AluYa5 SINE Alu 1 306 -5 355 291 57 65 chr15 30412606 30412792 -70967729 + MIR SINE MIR 7 192 -70 1940 155 0 3 chr15 30412792 30413095 -70967426 + AluSx SINE Alu 1 302 -10 355 291 57 65 chr15 30413095 30413155 -70967366 + MIR SINE MIR 192 251 -11 2440 56 3 16 chr15 30413241 30413545 -70966976 - AluY SINE Alu -11 300 1 2356 98 7 0 chr15 30414233 30414540 -70965981 - AluSq SINE Alu -3 310 2 1050 98 0 0 chr15 30414542 30414674 -70965847 - AluSq/x SINE Alu -181 132 1 1772 98 0 13 chr15 30415121 30415355 -70965166 - AluSx SINE Alu -81 231 1 304 267 0 12 chr15 30415520 30415606 -70964915 + MIR SINE MIR 164 248 -14 2586 83 0 0 chr15 30415780 30416092 -70964429 + AluSq SINE Alu 1 312 -1 203 290 85 57 chr15 30417523 30417611 -70962910 - MIR SINE MIR -30 232 148 2424 64 0 55 chr15 30417611 30417940 -70962581 - AluY SINE Alu 0 311 1 203 290 85 57 chr15 30417940 30418027 -70962494 - MIR SINE MIR -114 148 52 1977 147 0 13 chr15 30418287 30418600 -70961921 + AluJb SINE Alu 1 309 -3 2347 102 3 0 chr15 30419035 30419339 -70961182 - AluSg SINE Alu -5 305 1 4124 126 22 55 chr15 30419375 30420088 -70960433 + LTR8 LTR ERV1 1 690 -1 416 258 17 33 chr15 30420391 30420511 -70960010 - MER5B DNA MER1_type -1 177 60 198 103 0 0 chr15 30420649 30420678 -70959843 + (T)n Simple_repeat Simple_repeat 1 29 0 186 43 0 0 chr15 30420940 30420963 -70959558 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1906 99 57 4 chr15 30421249 30421512 -70959009 - AluSp SINE Alu -32 281 5 2157 101 13 16 chr15 30421527 30421834 -70958687 - AluSq SINE Alu -7 306 1 254 25 0 50 chr15 30422063 30422103 -70958418 - AluY SINE Alu -263 38 1 3084 198 88 4 chr15 30422106 30422798 -70957723 - L1MD2 LINE L1 -9 6350 5601 5163 130 19 60 chr15 30422898 30423122 -70957399 - L1PA16 LINE L1 -11 6155 5923 2138 128 3 3 chr15 30423122 30423428 -70957093 - AluSq SINE Alu -7 306 1 5163 130 19 60 chr15 30423428 30423952 -70956569 - L1PA16 LINE L1 -243 5923 5459 2094 129 0 3 chr15 30423952 30424246 -70956275 - AluSg SINE Alu -17 293 1 5163 130 19 60 chr15 30424246 30424526 -70955995 - L1PA16 LINE L1 -707 5459 5169 287 195 93 27 chr15 30424893 30424976 -70955545 + MIR SINE MIR 37 125 -83 1385 325 118 36 chr15 30425047 30425106 -70955415 + L2 LINE L2 1698 1751 -1563 2111 106 7 33 chr15 30425106 30425408 -70955113 - AluSx SINE Alu -18 294 1 1385 325 118 36 chr15 30425408 30426530 -70953991 + L2 LINE L2 1751 2976 -338 279 275 100 33 chr15 30426678 30426798 -70953723 + L2 LINE L2 3180 3307 -6 2289 110 3 0 chr15 30427541 30427841 -70952680 - AluSp SINE Alu -10 303 3 445 290 90 63 chr15 30428064 30428429 -70952092 - L2 LINE L2 -2 3311 2937 2365 80 13 0 chr15 30429011 30429310 -70951211 - AluSc SINE Alu -6 303 1 259 210 160 20 chr15 30429939 30430039 -70950482 - L2 LINE L2 0 3313 3200 274 287 53 11 chr15 30430110 30430204 -70950317 - MIR3 SINE MIR -21 187 90 948 144 26 0 chr15 30431104 30431257 -70949264 - L1PA15-16 LINE L1 -6437 412 256 3775 130 60 23 chr15 30431596 30433316 -70947205 + SVA Other Other 395 1151 -235 216 0 0 0 chr15 30433316 30433340 -70947181 + (T)n Simple_repeat Simple_repeat 1 24 0 2519 46 0 3 chr15 30433778 30434080 -70946441 + AluY SINE Alu 1 301 -10 2098 51 0 16 chr15 30435422 30435677 -70944844 + SVA Other Other 1135 1385 -1 2228 106 0 3 chr15 30436508 30436801 -70943720 - AluSq SINE Alu -21 292 1 924 102 8 0 chr15 30437022 30437149 -70943372 + FLAM_C SINE Alu 2 129 -4 445 247 247 16 chr15 30438288 30438482 -70942039 + MIR SINE MIR 3 241 -21 1223 232 140 41 chr15 30438583 30438997 -70941524 + MLT1K LTR MaLR 108 562 -26 454 320 23 0 chr15 30439507 30439635 -70940886 + L2 LINE L2 3139 3269 -3 1993 149 0 10 chr15 30440638 30440946 -70939575 - AluJb SINE Alu -7 305 1 439 328 68 25 chr15 30441181 30441504 -70939017 + L1MC/D LINE L1 5274 5610 -2198 2009 120 3 7 chr15 30441508 30441831 -70938690 + AluSx SINE Alu 1 322 0 228 170 0 0 chr15 30441881 30441934 -70938587 + L1MC4 LINE L1 6649 6701 -1341 247 256 100 33 chr15 30441948 30442038 -70938483 + L1MC/D LINE L1 5667 5762 -2046 203 314 14 29 chr15 30442230 30442300 -70938221 - MIR SINE MIR -113 95 27 227 120 0 60 chr15 30443222 30443272 -70937249 + (CGG)n Simple_repeat Simple_repeat 2 48 0 273 29 0 0 chr15 30443406 30443440 -70937081 + (CAA)n Simple_repeat Simple_repeat 2 35 0 2454 79 0 0 chr15 30443507 30443811 -70936710 + AluY SINE Alu 1 304 -7 1021 165 6 0 chr15 30443875 30444045 -70936476 + L1PB4 LINE L1 5986 6156 0 26 30 0 0 chr15 30444547 30444580 -70935941 + AT_rich Low_complexity Low_complexity 1 33 0 2380 98 0 0 chr15 30445496 30445793 -70934728 + AluSg1 SINE Alu 1 297 -12 244 143 0 71 chr15 30445979 30446035 -70934486 - L1MC4 LINE L1 -1339 6703 6652 661 118 0 0 chr15 30446966 30447059 -70933462 + AluS SINE Alu 2 94 -219 2408 134 2 42 chr15 30447580 30447984 -70932537 + MLT1B LTR MaLR 3 390 0 267 293 77 28 chr15 30448414 30448595 -70931926 - L2 LINE L2 -353 2961 2772 25 83 0 0 chr15 30449489 30449549 -70930972 + AT_rich Low_complexity Low_complexity 1 60 0 368 235 67 42 chr15 30449576 30449695 -70930826 + MIR SINE MIR 2 123 -139 29 0 0 0 chr15 30450928 30450957 -70929564 + AT_rich Low_complexity Low_complexity 1 29 0 2428 96 0 0 chr15 30452062 30452365 -70928156 + AluSq SINE Alu 1 303 -10 24 53 0 0 chr15 30452662 30452700 -70927821 + AT_rich Low_complexity Low_complexity 1 38 0 194 157 0 39 chr15 30453701 30453752 -70926769 + CT-rich Low_complexity Low_complexity 4 52 0 302 318 37 0 chr15 30453755 30453862 -70926659 - L2 LINE L2 0 3313 3203 2224 116 0 7 chr15 30454059 30454361 -70926160 - AluSx SINE Alu -11 301 2 23 0 0 0 chr15 30455630 30455653 -70924868 + AT_rich Low_complexity Low_complexity 1 23 0 186 139 47 23 chr15 30456082 30456125 -70924396 - MIR SINE MIR -3 259 216 * 245 325 204 30 chr15 30456089 30456320 -70924201 - L2 LINE L2 -16 3256 2986 1145 271 96 43 chr15 30456400 30456891 -70923630 - LTR33A LTR ERVL -5 518 2 1523 261 134 12 chr15 30457118 30457609 -70922912 + MLT1H1 LTR MaLR 2 552 -3 913 232 23 18 chr15 30457726 30457946 -70922575 - MER58A DNA MER1_type -3 221 1 2425 65 3 0 chr15 30461124 30461417 -70919104 + AluSp SINE Alu 1 294 -19 1975 85 8 4 chr15 30461564 30461822 -70918699 + AluSc SINE Alu 40 298 -11 1926 153 0 7 chr15 30461826 30462127 -70918394 + AluSx SINE Alu 1 299 -13 323 294 200 12 chr15 30463019 30463179 -70917342 + MIR SINE MIR 2 191 -71 479 126 126 0 chr15 30466450 30466537 -70913984 - AluSx SINE Alu -19 290 193 1130 103 0 0 chr15 30466538 30466684 -70913837 - AluSx SINE Alu -167 146 1 347 287 76 25 chr15 30467281 30467438 -70913083 - MIR SINE MIR 0 262 98 31 0 0 0 chr15 30470577 30470608 -70909913 + AT_rich Low_complexity Low_complexity 1 31 0 1967 110 3 47 chr15 30470609 30470909 -70909612 - AluSx SINE Alu -25 287 1 579 171 18 9 chr15 30471033 30471144 -70909377 + L1MB3 LINE L1 5577 5688 -495 459 196 165 0 chr15 30471162 30471259 -70909262 - L2 LINE L2 -10 3303 3191 25 51 0 0 chr15 30472261 30472300 -70908221 + GC_rich Low_complexity Low_complexity 1 39 0 2622 158 33 4 chr15 30472408 30472858 -70907663 + L1MB3 LINE L1 5675 6137 -46 2411 62 7 13 chr15 30472863 30473167 -70907354 + AluSq SINE Alu 1 302 -11 2218 105 0 0 chr15 30473177 30473471 -70907050 + AluY SINE Alu 1 294 -17 229 222 0 0 chr15 30474205 30474250 -70906271 + MIR SINE MIR 192 236 -26 196 311 22 33 chr15 30475061 30475151 -70905370 + L2 LINE L2 3180 3268 -4 23 33 0 0 chr15 30475545 30475575 -70904946 + AT_rich Low_complexity Low_complexity 1 30 0 27 87 0 0 chr15 30476388 30476457 -70904064 + AT_rich Low_complexity Low_complexity 1 69 0 2296 90 0 0 chr15 30476469 30476759 -70903762 - AluSx SINE Alu -22 290 1 23 0 0 0 chr15 30476765 30476788 -70903733 + AT_rich Low_complexity Low_complexity 1 23 0 2361 88 0 7 chr15 30476917 30477223 -70903298 - AluSg SINE Alu -6 304 1 1042 90 0 0 chr15 30477226 30477359 -70903162 - AluSq/x SINE Alu -180 133 1 2750 62 18 25 chr15 30477366 30477896 -70902625 - LTR17 LTR ERV1 -196 584 1 2238 92 7 0 chr15 30478084 30478376 -70902145 + AluSc SINE Alu 1 294 -15 1910 104 18 11 chr15 30479430 30479743 -70900778 - AluSx SINE Alu 0 315 1 25 0 0 0 chr15 30480297 30480322 -70900199 + AT_rich Low_complexity Low_complexity 1 25 0 2454 93 3 0 chr15 30480326 30480638 -70899883 - AluSp SINE Alu 0 313 1 1597 165 4 18 chr15 30480911 30481190 -70899331 + AluJb SINE Alu 1 275 -37 348 316 51 0 chr15 30481723 30481840 -70898681 + L2 LINE L2 3189 3311 -2 206 364 24 57 chr15 30482724 30483021 -70897500 - L2 LINE L2 -406 2908 2622 22 0 0 0 chr15 30485040 30485062 -70895459 + AT_rich Low_complexity Low_complexity 1 22 0 403 294 74 2 chr15 30486397 30486552 -70893969 - MER5A DNA MER1_type 0 189 12 392 274 68 0 chr15 30486648 30486765 -70893756 - L2 LINE L2 0 3313 3189 252 276 81 23 chr15 30487023 30487110 -70893411 - L2 LINE L2 0 3313 3222 4083 146 44 22 chr15 30487260 30487920 -70892601 + L1MA4 LINE L1 5491 6173 -127 297 51 0 0 chr15 30487920 30487959 -70892562 + (CA)n Simple_repeat Simple_repeat 2 40 0 4083 146 44 22 chr15 30487959 30488086 -70892435 + L1MA4 LINE L1 6173 6296 -4 324 128 59 59 chr15 30488098 30488200 -70892321 - Zaphod DNA AcHobo -3112 919 818 1311 322 86 17 chr15 30488236 30488816 -70891705 - L2 LINE L2 -338 2976 2357 237 196 0 54 chr15 30489718 30489774 -70890747 + CT-rich Low_complexity Low_complexity 3 55 0 506 299 41 7 chr15 30490116 30490263 -70890258 - MIR SINE MIR -22 240 89 1890 113 98 0 chr15 30490880 30491155 -70889366 + AluSx SINE Alu 1 302 -10 2518 93 0 0 chr15 30491461 30491773 -70888748 + AluSx SINE Alu 1 312 0 198 0 0 0 chr15 30492790 30492812 -70887709 + (T)n Simple_repeat Simple_repeat 1 22 0 26 30 0 0 chr15 30492886 30492919 -70887602 + AT_rich Low_complexity Low_complexity 1 33 0 237 264 46 90 chr15 30493428 30493698 -70886823 + L3 LINE CR1 1227 1543 -34 300 245 85 0 chr15 30493993 30494087 -70886434 - L1MC5 LINE L1 -30 7931 7830 1922 198 62 37 chr15 30494112 30494596 -70885925 + MLT1D LTR MaLR 7 502 -3 31 44 0 0 chr15 30494832 30494877 -70885644 + AT_rich Low_complexity Low_complexity 1 45 0 1224 190 118 14 chr15 30495304 30495583 -70884938 + AluJo SINE Alu 1 308 -4 1939 132 26 166 chr15 30496140 30496677 -70883844 + MLT2C2 LTR ERVL 1 462 -2 1715 177 7 0 chr15 30498602 30498890 -70881631 + AluJo SINE Alu 1 290 -22 2482 58 0 0 chr15 30499526 30499818 -70880703 - AluY SINE Alu -19 292 1 441 200 87 9 chr15 30500581 30500696 -70879825 - L1ME4a LINE L1 -54 6067 5944 227 204 0 0 chr15 30501238 30501282 -70879239 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 387 0 0 0 chr15 30501503 30501546 -70878975 + (TG)n Simple_repeat Simple_repeat 2 44 0 965 260 22 4 chr15 30502525 30502756 -70877765 - MIR SINE MIR -22 240 6 199 411 36 9 chr15 30503938 30504050 -70876471 + L2 LINE L2 2422 2536 -778 209 289 22 0 chr15 30504115 30504160 -70876361 - MIR SINE MIR -142 66 21 278 320 11 45 chr15 30504401 30504579 -70875942 + L2 LINE L2 1538 1709 -1605 2277 92 0 3 chr15 30504667 30504970 -70875551 - AluSg SINE Alu -8 302 1 181 346 59 0 chr15 30505076 30505177 -70875344 + L2 LINE L2 1881 1987 -1327 * 257 246 0 0 chr15 30505173 30505230 -70875291 - L2 LINE L2 0 3272 3216 552 233 122 11 chr15 30506685 30506850 -70873671 - MER5A DNA MER1_type 0 189 4 4779 149 51 6 chr15 30506871 30507698 -70872823 + MER6 DNA MER2_type 2 865 0 291 225 12 38 chr15 30507744 30507824 -70872697 - MER103 DNA DNA -17 149 72 2190 122 3 0 chr15 30507921 30508232 -70872289 - AluSq SINE Alu -1 312 1 1139 184 147 7 chr15 30508415 30508714 -70871807 + MER58B DNA MER1_type 1 341 0 204 97 0 0 chr15 30509135 30509166 -70871355 + (GA)n Simple_repeat Simple_repeat 2 32 0 1262 138 51 12 chr15 30509508 30509762 -70870759 + L1MA6 LINE L1 6037 6300 0 443 253 127 0 chr15 30509787 30509945 -70870576 + MIR SINE MIR 85 262 0 231 208 38 0 chr15 30509974 30510027 -70870494 + L2 LINE L2 3258 3312 -1 436 357 39 18 chr15 30510739 30510967 -70869554 - MIR SINE MIR -30 232 3 1360 264 123 50 chr15 30514249 30514848 -70865673 + L2 LINE L2 1063 1705 -1609 4753 124 40 6 chr15 30514857 30515638 -70864883 + L1PA16 LINE L1 5357 6163 -3 1903 295 93 80 chr15 30515642 30515870 -70864651 + L2 LINE L2 1713 1937 -1376 1720 131 10 39 chr15 30515870 30516176 -70864345 - L1PA15 LINE L1 0 6165 5869 1903 295 93 80 chr15 30516176 30516277 -70864244 + L2 LINE L2 1937 2035 -1278 2572 35 0 0 chr15 30516277 30516588 -70863933 + L1PA4 LINE L1 5845 6155 0 1903 295 93 80 chr15 30516588 30516937 -70863584 + L2 LINE L2 2035 2378 -935 1607 168 40 114 chr15 30516937 30517341 -70863180 + MLT1A2 LTR MaLR 1 374 0 1903 295 93 80 chr15 30517341 30518237 -70862284 + L2 LINE L2 2378 3311 -2 22 0 0 0 chr15 30519825 30519847 -70860674 + AT_rich Low_complexity Low_complexity 1 22 0 21 89 0 0 chr15 30519965 30520021 -70860500 + AT_rich Low_complexity Low_complexity 1 56 0 999 251 37 33 chr15 30521483 30521972 -70858549 + MER39 LTR ERV1 18 542 0 231 292 18 62 chr15 30522718 30522831 -70857690 - MIR SINE MIR -50 212 105 24 0 0 0 chr15 30522999 30523023 -70857498 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr15 30523619 30523647 -70856874 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr15 30524089 30524119 -70856402 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr15 30527043 30527080 -70853441 + AT_rich Low_complexity Low_complexity 1 37 0 2002 130 10 79 chr15 30527092 30527294 -70853227 - Tigger4(Zombi) DNA MER2_type -1 2730 2566 2302 114 0 0 chr15 30527294 30527600 -70852921 - AluSg SINE Alu -4 306 1 2002 130 10 79 chr15 30527600 30527788 -70852733 - Tigger4(Zombi) DNA MER2_type -165 2566 2367 459 165 101 0 chr15 30527812 30527891 -70852630 - Tigger4(Zombi) DNA MER2_type -2644 87 1 1061 149 0 0 chr15 30528133 30528287 -70852234 - FAM SINE Alu -18 157 4 486 172 35 0 chr15 30528323 30528410 -70852111 - AluJb SINE Alu -111 201 112 25 31 0 0 chr15 30528410 30528442 -70852079 + AT_rich Low_complexity Low_complexity 1 32 0 637 312 88 71 chr15 30528594 30529142 -70851379 + L2 LINE L2 2325 2881 -433 427 297 25 0 chr15 30529351 30529469 -70851052 - L2 LINE L2 0 3313 3193 2445 68 3 0 chr15 30531909 30532205 -70848316 - AluSp SINE Alu -16 297 1 1646 169 19 36 chr15 30532727 30533035 -70847486 + AluJo SINE Alu 1 303 -9 306 0 0 0 chr15 30533035 30533069 -70847452 + (CAT)n Simple_repeat Simple_repeat 2 35 0 2279 95 0 7 chr15 30533092 30533387 -70847134 + AluSp SINE Alu 1 293 -20 678 184 0 26 chr15 30533393 30533545 -70846976 - L1MA6 LINE L1 -9 6291 6144 2563 88 5 37 chr15 30533666 30534040 -70846481 - THE1B LTR MaLR 0 364 3 286 388 39 0 chr15 30534248 30534351 -70846170 + L2 LINE L2 3149 3255 -17 2289 115 3 0 chr15 30534359 30534671 -70845850 + AluSp SINE Alu 1 313 0 329 250 116 47 chr15 30534686 30534962 -70845559 + L1ME4a LINE L1 5562 5856 -265 468 0 0 0 chr15 30535827 30535879 -70844642 + (CA)n Simple_repeat Simple_repeat 2 53 0 1385 143 29 97 chr15 30535940 30536219 -70844302 - AluJb SINE Alu -49 263 4 474 310 69 0 chr15 30536461 30536606 -70843915 + MIR SINE MIR 15 169 -93 21 57 0 0 chr15 30536914 30536949 -70843572 + AT_rich Low_complexity Low_complexity 1 35 0 324 0 0 0 chr15 30537655 30537691 -70842830 + (T)n Simple_repeat Simple_repeat 1 36 0 274 246 156 96 chr15 30541104 30541159 -70839362 - MIR3 SINE MIR -1 207 157 2369 48 19 32 chr15 30541159 30541468 -70839053 - AluY SINE Alu -6 305 1 274 246 156 96 chr15 30541468 30541579 -70838942 - MIR3 SINE MIR -51 157 31 227 264 19 0 chr15 30541826 30541879 -70838642 - MIR3 SINE MIR -24 184 131 698 136 33 2 chr15 30542208 30542340 -70838181 + L1M3 LINE L1 5474 5613 -555 238 220 17 17 chr15 30542410 30542469 -70838052 - L2 LINE L2 -1 3271 3213 218 276 173 11 chr15 30542473 30542621 -70837900 + MIR SINE MIR 5 256 -6 1153 176 107 76 chr15 30543138 30543428 -70837093 + AluJo SINE Alu 1 299 -3 4433 125 26 30 chr15 30543445 30544182 -70836339 + MER50 LTR ERV1 1 734 0 812 164 62 0 chr15 30544182 30544322 -70836199 + FRAM SINE Alu 11 159 -17 859 233 173 63 chr15 30545079 30545636 -70834885 - LTR29 LTR ERV1 0 747 141 3126 154 38 62 chr15 30545636 30546344 -70834177 - LTR8 LTR ERV1 0 691 1 859 233 173 63 chr15 30546344 30546503 -70834018 - LTR29 LTR ERV1 -606 141 1 362 285 95 29 chr15 30546880 30547017 -70833504 - MIR SINE MIR -107 155 10 2187 173 51 27 chr15 30547051 30547501 -70833020 + LOR1b LTR ERV1 1 461 0 299 288 72 33 chr15 30547666 30547819 -70832702 + MIR SINE MIR 101 259 -3 319 270 29 66 chr15 30548193 30548330 -70832191 - L2 LINE L2 0 3313 3182 28 91 0 0 chr15 30548763 30548840 -70831681 + AT_rich Low_complexity Low_complexity 1 77 0 372 22 0 0 chr15 30549762 30549807 -70830714 + (GA)n Simple_repeat Simple_repeat 2 46 0 303 220 0 181 chr15 30550092 30550191 -70830330 - MIR SINE MIR -21 241 186 2946 162 41 2 chr15 30550191 30550753 -70829768 - L1MA4 LINE L1 -6 6294 5711 303 220 0 181 chr15 30550753 30550830 -70829691 - MIR SINE MIR -76 186 97 2782 215 23 0 chr15 30552700 30553262 -70827259 - L1MD3 LINE L1 0 7995 7421 250 243 40 14 chr15 30553267 30553341 -70827180 - MLT1F1 LTR MaLR -443 124 64 1184 243 11 8 chr15 30553387 30553654 -70826867 - L1MD3 LINE L1 -1023 6972 6705 29 21 0 21 chr15 30553855 30553875 -70826646 + AT_rich Low_complexity Low_complexity 1 20 -26 842 240 12 0 chr15 30553875 30554046 -70826475 + FAM SINE Alu 1 173 -2 29 21 0 21 chr15 30554046 30554072 -70826449 + AT_rich Low_complexity Low_complexity 20 46 0 1268 131 27 0 chr15 30554487 30554708 -70825813 + L1 LINE L1 4382 4608 -1538 10531 229 27 31 chr15 30554710 30555081 -70825440 - L1PA12 LINE L1 -2471 5113 4742 2602 64 0 0 chr15 30555081 30555392 -70825129 - AluY SINE Alu 0 311 1 10531 229 27 31 chr15 30555392 30555672 -70824849 - L1PA12 LINE L1 -2842 4742 4462 4664 36 0 2 chr15 30555672 30556228 -70824293 + L1PA5 LINE L1 5593 6147 -7 10531 229 27 31 chr15 30556228 30556354 -70824167 - L1PA12 LINE L1 -3122 4462 4337 2041 141 0 0 chr15 30556354 30556664 -70823857 - AluSx SINE Alu 0 310 1 10531 229 27 31 chr15 30556664 30559665 -70820856 - L1PA12 LINE L1 -3247 4337 1 843 168 46 55 chr15 30559949 30560187 -70820334 - L1MC5 LINE L1 -113 7848 7613 212 100 0 0 chr15 30560709 30560739 -70819782 - L2 LINE L2 -8 3305 3276 321 278 18 31 chr15 30562067 30562207 -70818314 - MIR SINE MIR -9 199 63 470 304 98 16 chr15 30562210 30562763 -70817758 - L1M4 LINE L1 -1781 4365 3658 1068 191 125 78 chr15 30562764 30563173 -70817348 - LTR37B LTR ERV1 -2 466 39 192 192 96 39 chr15 30564103 30564155 -70816366 - L2 LINE L2 -8 3264 3210 21 71 0 0 chr15 30564174 30564216 -70816305 + AT_rich Low_complexity Low_complexity 1 42 0 2146 111 23 13 chr15 30564921 30565227 -70815294 - AluSq SINE Alu -3 310 2 21 71 0 0 chr15 30566061 30566103 -70814418 + AT_rich Low_complexity Low_complexity 1 42 0 410 231 0 13 chr15 30566542 30566620 -70813901 - L2 LINE L2 -2 3270 3194 27 29 0 0 chr15 30566742 30566776 -70813745 + AT_rich Low_complexity Low_complexity 1 34 0 482 240 137 73 chr15 30566890 30567203 -70813318 - L1ME4a LINE L1 0 6121 5789 315 314 90 47 chr15 30567315 30567889 -70812632 - L1ME4a LINE L1 -1310 4836 4224 24 32 0 0 chr15 30569381 30569412 -70811109 + AT_rich Low_complexity Low_complexity 1 31 0 200 250 59 73 chr15 30571707 30571775 -70808746 - L2 LINE L2 -11 3261 3195 1893 166 7 7 chr15 30573054 30573362 -70807159 - AluJo SINE Alu -4 308 1 22 56 0 0 chr15 30574153 30574189 -70806332 + AT_rich Low_complexity Low_complexity 1 36 0 33 0 0 0 chr15 30574900 30574933 -70805588 + AT_rich Low_complexity Low_complexity 1 33 0 252 0 0 0 chr15 30576963 30576991 -70803530 + (T)n Simple_repeat Simple_repeat 1 28 0 2620 37 0 0 chr15 30579847 30580144 -70800377 + AluY SINE Alu 1 297 -14 1167 234 32 41 chr15 30580432 30580631 -70799890 + L2 LINE L2 2423 2619 -695 2224 99 3 3 chr15 30580631 30580924 -70799597 - AluSq SINE Alu -20 293 1 1167 234 32 41 chr15 30580924 30581040 -70799481 + L2 LINE L2 2619 2735 -579 1348 175 91 29 chr15 30581414 30581688 -70798833 - AluJo SINE Alu -21 291 1 725 326 23 16 chr15 30581698 30581956 -70798565 - MIR SINE MIR 0 262 3 198 276 300 15 chr15 30582108 30582235 -70798286 + MIR SINE MIR 7 150 -64 330 348 89 0 chr15 30582634 30582769 -70797752 - L2 LINE L2 0 3272 3126 22 0 0 0 chr15 30583140 30583162 -70797359 + AT_rich Low_complexity Low_complexity 1 22 0 2543 65 3 0 chr15 30583361 30583668 -70796853 - AluSq SINE Alu -5 308 1 1639 160 91 9 chr15 30583823 30584141 -70796380 + MER2 DNA MER2_type 1 344 0 299 80 0 0 chr15 30586339 30586389 -70794132 + Alu SINE Alu 250 299 -1 1777 155 26 16 chr15 30587050 30587354 -70793167 - AluJo SINE Alu -5 307 1 2439 55 0 7 chr15 30587367 30587660 -70792861 - AluY SINE Alu -16 295 5 213 94 0 0 chr15 30588360 30588392 -70792129 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 183 256 0 0 chr15 30588402 30588441 -70792080 - L2 LINE L2 -48 3224 3186 215 364 57 0 chr15 30590440 30590528 -70789993 - L2 LINE L2 -24 3248 3156 2413 60 0 0 chr15 30591541 30591872 -70788649 + AluY SINE Alu 1 331 0 23 33 0 0 chr15 30592554 30592584 -70787937 + AT_rich Low_complexity Low_complexity 1 30 0 256 362 91 9 chr15 30592651 30592872 -70787649 - L3b LINE CR1 -157 1426 1188 1958 34 151 8 chr15 30593124 30593389 -70787132 - AluY SINE Alu -8 303 1 2535 45 0 29 chr15 30593439 30593751 -70786770 - AluY SINE Alu -8 303 1 537 321 21 21 chr15 30594487 30594680 -70785841 - MIR SINE MIR -57 205 13 192 40 0 0 chr15 30594899 30594924 -70785597 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 727 294 30 21 chr15 30595506 30595697 -70784824 + MIR SINE MIR 2 197 -65 1237 219 88 12 chr15 30595697 30596016 -70784505 - MER2 DNA MER2_type 0 344 2 727 294 30 21 chr15 30596016 30596059 -70784462 + MIR SINE MIR 197 238 -24 2080 154 45 38 chr15 30596089 30596280 -70784241 + MSTB LTR MaLR 1 189 -237 2302 95 7 0 chr15 30596280 30596586 -70783935 + AluSx SINE Alu 1 308 -4 2080 154 45 38 chr15 30596586 30596791 -70783730 + MSTB LTR MaLR 189 400 -26 1893 85 7 44 chr15 30596808 30597101 -70783420 - L1PB1 LINE L1 -3 7567 7286 * 7989 88 4 14 chr15 30597100 30598571 -70781950 + L1PA8 LINE L1 4190 5651 -521 2369 71 0 3 chr15 30598571 30598868 -70781653 - AluY SINE Alu -15 296 1 7989 88 4 14 chr15 30598868 30599382 -70781139 + L1PA8 LINE L1 5651 6169 -3 5739 169 17 0 chr15 30599386 30601092 -70779429 - L1PB1 LINE L1 -280 7290 5557 270 88 14 0 chr15 30601092 30601134 -70779387 + MSTB LTR MaLR 380 427 -1 8931 165 36 17 chr15 30601135 30602421 -70778100 + MSTB-int LTR MaLR 1 1326 -325 2171 116 0 7 chr15 30602421 30602724 -70777797 + AluSc SINE Alu 1 301 -8 8931 165 36 17 chr15 30602724 30603057 -70777464 + MSTB-int LTR MaLR 1326 1651 0 2366 172 32 2 chr15 30603058 30603465 -70777056 + MSTB LTR MaLR 2 420 -6 1446 170 91 65 chr15 30603470 30603811 -70776710 + MLT1A2 LTR MaLR 25 374 0 1294 51 0 0 chr15 30604610 30604768 -70775753 - L1PA3 LINE L1 -2 6153 5996 1688 230 8 0 chr15 30605291 30605682 -70774839 - L1PB1 LINE L1 -3137 4428 4035 1571 117 8 30 chr15 30605685 30605951 -70774570 - L1PB1 LINE L1 -4250 3315 3056 1206 178 14 0 chr15 30605955 30606169 -70774352 - AluJb SINE Alu -10 302 86 17848 154 36 7 chr15 30606170 30609147 -70771374 - L1PB1 LINE L1 -4501 3064 2 2221 170 24 19 chr15 30609147 30609571 -70770950 - MSTB LTR MaLR 0 426 1 628 285 86 77 chr15 30609571 30609827 -70770694 - L2 LINE L2 -2404 910 649 2224 120 0 3 chr15 30609827 30610135 -70770386 + AluSg SINE Alu 1 307 -3 628 285 86 77 chr15 30610135 30610215 -70770306 - L2 LINE L2 -2665 649 571 538 284 94 13 chr15 30610287 30610553 -70769968 + L1MC4a LINE L1 5536 5774 -347 2008 146 0 3 chr15 30610553 30610854 -70769667 + AluSq SINE Alu 1 300 -13 538 284 94 13 chr15 30610854 30610910 -70769611 + L1MC4a LINE L1 5774 5824 -297 637 320 173 18 chr15 30611220 30611660 -70768861 + L2 LINE L2 2806 3313 0 258 253 104 50 chr15 30612741 30612923 -70767598 + LTR16A1 LTR ERVL 181 372 -85 2536 48 0 10 chr15 30613884 30614195 -70766326 + AluY SINE Alu 1 308 -3 338 188 0 26 chr15 30615353 30615470 -70765051 + GA-rich Low_complexity Low_complexity 1 114 0 2659 88 58 21 chr15 30616156 30616588 -70763933 + LTR7 LTR ERV1 1 448 -2 16621 89 8 10 chr15 30616590 30619704 -70760817 + HERVH LTR ERV1 1 2987 -4726 871 128 20 0 chr15 30619698 30619846 -70760675 + HERVH LTR ERV1 3140 3290 -4423 * 870 149 0 7 chr15 30619836 30619984 -70760537 + HERVH LTR ERV1 3492 3638 -4075 * 1121 144 3 4 chr15 30619974 30620335 -70760186 + HERVH LTR ERV1 4744 5149 -2564 1226 134 23 9 chr15 30620336 30620553 -70759968 + HERVH LTR ERV1 5600 5819 -1894 2496 63 45 13 chr15 30620553 30620931 -70759590 + HERVH LTR ERV1 7324 7713 0 2638 97 58 21 chr15 30620931 30621363 -70759158 + LTR7 LTR ERV1 1 448 -2 461 327 67 0 chr15 30622316 30622481 -70758040 + MIR3 SINE MIR 23 198 -10 2510 50 0 0 chr15 30622760 30623057 -70757464 - AluY SINE Alu -8 303 7 2053 72 72 6 chr15 30623413 30623777 -70756744 + LTR7 LTR ERV1 1 448 -2 241 184 61 0 chr15 30623823 30623872 -70756649 - L2 LINE L2 0 3313 3262 2873 157 48 35 chr15 30625658 30626283 -70754238 + MER39 LTR ERV1 75 707 0 22 0 0 0 chr15 30626329 30626351 -70754170 + AT_rich Low_complexity Low_complexity 1 22 0 222 130 19 37 chr15 30627383 30627402 -70753119 + A-rich Low_complexity Low_complexity 5 23 -34 2394 61 0 49 chr15 30627402 30627729 -70752792 + AluY SINE Alu 1 311 0 222 130 19 37 chr15 30627729 30627763 -70752758 + A-rich Low_complexity Low_complexity 23 57 0 24 32 0 0 chr15 30628275 30628306 -70752215 + AT_rich Low_complexity Low_complexity 1 31 0 419 85 0 0 chr15 30628727 30628786 -70751735 - L1PA16 LINE L1 -9 6157 6099 204 311 70 70 chr15 30628905 30629162 -70751359 + L2 LINE L2 2635 2891 -423 1773 122 72 4 chr15 30629383 30629645 -70750876 + AluSq SINE Alu 6 285 -28 186 43 0 0 chr15 30629645 30629668 -70750853 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 468 239 103 0 chr15 30629694 30629811 -70750710 - MIR SINE MIR -27 235 107 429 148 0 12 chr15 30629893 30629974 -70750547 + MER103 DNA DNA 8 87 -79 184 255 59 20 chr15 30630051 30630102 -70750419 - MER5C DNA MER1_type -271 53 1 248 311 14 0 chr15 30630563 30630637 -70749884 + MIR3 SINE MIR 118 192 -16 2021 108 90 58 chr15 30632188 30632622 -70747899 - LTR7 LTR ERV1 -2 448 1 306 244 25 17 chr15 30633435 30633554 -70746967 + (TA)n Simple_repeat Simple_repeat 2 121 0 1824 178 45 7 chr15 30633568 30633989 -70746532 - L1MC3 LINE L1 -35 7750 7314 24 0 0 0 chr15 30634993 30635017 -70745504 + AT_rich Low_complexity Low_complexity 1 24 0 306 0 0 0 chr15 30635292 30635326 -70745195 + (TG)n Simple_repeat Simple_repeat 1 34 0 471 326 80 0 chr15 30635968 30636143 -70744378 - MIR3 SINE MIR -3 205 17 2188 99 7 0 chr15 30636396 30636689 -70743832 + AluSg SINE Alu 1 295 -15 2405 86 3 0 chr15 30637630 30637933 -70742588 - AluSg SINE Alu -6 304 1 64 50 0 0 chr15 30637981 30638080 -70742441 + AT_rich Low_complexity Low_complexity 1 99 0 1931 154 0 0 chr15 30639090 30639375 -70741146 + AluJo SINE Alu 12 296 -16 1423 54 0 0 chr15 30639954 30640122 -70740399 + AluY SINE Alu 1 168 -143 623 197 47 8 chr15 30640241 30640394 -70740127 - L1MC2 LINE L1 0 6333 6175 965 161 103 179 chr15 30640395 30640824 -70739697 - MSTD LTR MaLR 0 396 1 2548 223 164 19 chr15 30640875 30641576 -70738945 - MSTD-int LTR MaLR 0 1735 933 3317 198 18 31 chr15 30641624 30642353 -70738168 - MSTD-int LTR MaLR -970 765 45 4264 86 16 80 chr15 30642353 30643063 -70737458 - MER4A LTR ERV1 0 664 1 3317 198 18 31 chr15 30643063 30643107 -70737414 - MSTD-int LTR MaLR -1690 45 2 1169 226 77 64 chr15 30643107 30643445 -70737076 - MSTD LTR MaLR -2 394 49 2301 79 0 0 chr15 30643445 30643736 -70736785 + AluY SINE Alu 1 291 -20 1169 226 77 64 chr15 30643736 30643786 -70736735 - MSTD LTR MaLR -347 49 1 911 169 0 6 chr15 30643786 30643964 -70736557 - L1MC2 LINE L1 -162 6182 6006 199 292 0 0 chr15 30644198 30644246 -70736275 + L2 LINE L2 3020 3067 -205 193 243 54 54 chr15 30644264 30644338 -70736183 - L2 LINE L2 0 3313 3240 1915 152 0 32 chr15 30644741 30645050 -70735471 - AluJo SINE Alu -12 300 2 902 108 0 38 chr15 30645572 30645757 -70734764 + (TTC)n Simple_repeat Simple_repeat 2 179 0 1878 133 31 3 chr15 30645758 30646167 -70734354 - AluSg SINE Alu 0 417 1 342 0 0 0 chr15 30646330 30646368 -70734153 + (CA)n Simple_repeat Simple_repeat 2 39 0 37 23 0 0 chr15 30647117 30647161 -70733360 + AT_rich Low_complexity Low_complexity 1 44 0 2079 159 10 0 chr15 30647374 30647682 -70732839 - AluJo SINE Alu -1 311 1 2445 113 8 24 chr15 30647832 30648202 -70732319 + THE1B LTR MaLR 1 364 0 392 314 127 37 chr15 30657163 30657462 -70723059 - L2 LINE L2 0 3313 2988 573 289 250 22 chr15 30657749 30658257 -70722264 + L2 LINE L2 178 801 -2513 350 263 51 51 chr15 30658264 30658481 -70722040 - MER112 DNA MER1_type -12 248 32 2102 90 0 60 chr15 30658483 30658809 -70721712 - AluY SINE Alu 0 308 1 1577 290 108 101 chr15 30658848 30659372 -70721149 + L2 LINE L2 807 1326 -1988 1346 7 0 0 chr15 30659372 30659518 -70721003 - AluYb8 SINE Alu -16 302 157 1577 290 108 101 chr15 30659518 30660604 -70719917 + L2 LINE L2 1326 2603 -711 386 321 66 29 chr15 30662214 30662488 -70718033 + L2 LINE L2 2982 3265 -48 268 306 10 10 chr15 30662541 30662639 -70717882 - L2 LINE L2 -674 2640 2543 901 309 139 23 chr15 30662679 30663203 -70717318 - L2 LINE L2 -351 2963 2379 468 197 111 0 chr15 30663780 30663897 -70716624 + MER94 DNA DNA 4 133 -1 28 22 0 22 chr15 30664245 30664258 -70716263 + AT_rich Low_complexity Low_complexity 1 13 -32 2078 118 0 10 chr15 30664258 30664547 -70715974 + AluSx SINE Alu 1 286 -26 28 22 0 22 chr15 30664547 30664579 -70715942 + AT_rich Low_complexity Low_complexity 13 45 0 41 0 0 0 chr15 30665875 30665916 -70714605 + AT_rich Low_complexity Low_complexity 1 41 0 296 368 7 15 chr15 30666728 30666864 -70713657 - MIR3 SINE MIR -50 158 24 1091 262 86 66 chr15 30669691 30670282 -70710239 + L1MC4 LINE L1 7297 7899 -143 203 272 12 0 chr15 30670292 30670373 -70710148 + (TA)n Simple_repeat Simple_repeat 2 83 0 1622 152 12 0 chr15 30670562 30670806 -70709715 + AluJb SINE Alu 1 247 -65 225 0 0 0 chr15 30670806 30670831 -70709690 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 803 110 59 0 chr15 30670860 30670996 -70709525 + L1MA7 LINE L1 6148 6291 0 303 219 406 0 chr15 30672608 30672731 -70707790 + MER5B DNA MER1_type 1 173 -5 2250 84 0 39 chr15 30673340 30673674 -70706847 + AluSp SINE Alu 1 313 0 998 250 49 46 chr15 30674237 30674521 -70706000 + L3 LINE CR1 1292 1576 -1 195 100 0 0 chr15 30674574 30674604 -70705917 + (A)n Simple_repeat Simple_repeat 1 30 0 3794 165 26 32 chr15 30675282 30675518 -70705003 - L1 LINE L1 -1183 4963 4727 2031 132 0 17 chr15 30675518 30675813 -70704708 + AluSx SINE Alu 1 290 -22 3794 165 26 32 chr15 30675813 30676346 -70704175 - L1 LINE L1 -1419 4727 4199 2127 174 7 7 chr15 30676348 30676779 -70703742 + L1MA4 LINE L1 4973 5403 -743 9113 108 14 1 chr15 30676794 30678051 -70702470 + HSMAR1 DNA Mariner 2 1274 -13 4725 163 13 5 chr15 30678054 30678909 -70701612 + L1MA4 LINE L1 5434 6295 -5 556 287 117 30 chr15 30678913 30679302 -70701219 + L1ME LINE L1 924 1512 -4904 411 289 53 41 chr15 30679306 30679549 -70700972 + L1ME LINE L1 1550 1809 -4628 1842 149 13 13 chr15 30679549 30679850 -70700671 + AluJb SINE Alu 1 301 -11 411 289 53 41 chr15 30679850 30679872 -70700649 + L1ME LINE L1 1809 1829 -4608 821 149 29 6 chr15 30679874 30680048 -70700473 + GA-rich Low_complexity Low_complexity 1 178 0 332 279 9 65 chr15 30680048 30680263 -70700258 + L1ME LINE L1 1826 2028 -4579 515 268 77 5 chr15 30680606 30680838 -70699683 + L1ME LINE L1 2411 2624 -3802 945 270 105 0 chr15 30680854 30681224 -70699297 + L1ME LINE L1 2698 3106 -3320 31 0 0 0 chr15 30681341 30681372 -70699149 + AT_rich Low_complexity Low_complexity 1 31 0 1910 150 3 0 chr15 30682032 30682319 -70698202 + AluSx SINE Alu 1 288 -24 34 24 0 0 chr15 30682335 30682376 -70698145 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr15 30683371 30683392 -70697129 + AT_rich Low_complexity Low_complexity 1 21 0 1523 167 67 90 chr15 30683505 30683937 -70696584 - LTR8A LTR ERV1 -305 422 1 950 210 23 78 chr15 30683937 30684246 -70696275 + L1ME3A LINE L1 5879 6170 0 1985 203 96 84 chr15 30684359 30685077 -70695444 - LTR8A LTR ERV1 0 727 1 357 267 159 20 chr15 30685217 30685412 -70695109 - HAL1 LINE L1 -1158 1349 1128 734 237 155 0 chr15 30686560 30686779 -70693742 + MIR SINE MIR 5 257 -5 433 289 54 89 chr15 30687238 30687608 -70692913 + HAL1 LINE L1 817 1173 -1334 1659 280 63 20 chr15 30687722 30688733 -70691788 + L1ME LINE L1 4842 5894 -556 1768 163 10 20 chr15 30689013 30689308 -70691213 - AluJo SINE Alu -19 293 2 524 273 136 38 chr15 30689408 30689672 -70690849 - L2 LINE L2 -94 3219 2930 1994 91 0 25 chr15 30689910 30690185 -70690336 - AluY SINE Alu -10 301 34 481 236 87 0 chr15 30690223 30690350 -70690171 + MIR SINE MIR 16 153 -55 21 0 0 0 chr15 30690681 30690702 -70689819 + AT_rich Low_complexity Low_complexity 1 21 0 186 167 0 0 chr15 30690915 30690951 -70689570 + CT-rich Low_complexity Low_complexity 1 36 0 404 331 31 0 chr15 30690973 30691100 -70689421 + L2 LINE L2 3180 3310 -3 1897 115 33 63 chr15 30691334 30691700 -70688821 - THE1A LTR MaLR 0 355 1 25 0 0 0 chr15 30691981 30692006 -70688515 + AT_rich Low_complexity Low_complexity 1 25 0 790 310 67 28 chr15 30694117 30694504 -70686017 - LTR16C LTR ERVL 0 491 90 26 50 0 0 chr15 30694732 30694772 -70685749 + AT_rich Low_complexity Low_complexity 1 40 0 252 307 16 55 chr15 30695200 30695327 -70685194 + MIR SINE MIR 134 255 -7 2883 77 5 0 chr15 30696234 30696610 -70683911 + L1PA11 LINE L1 5530 5907 -267 11658 114 34 52 chr15 30696959 30699950 -70680571 - L1PA11 LINE L1 0 6174 3221 8768 31 1 0 chr15 30699950 30701542 -70678979 + L1PA3 LINE L1 4337 5930 -225 709 281 109 13 chr15 30701646 30702259 -70678262 - L1M4 LINE L1 -2655 3491 2820 1598 175 35 0 chr15 30702334 30702648 -70677873 - L1MB2 LINE L1 -25 5970 5646 762 163 16 0 chr15 30702649 30702778 -70677743 - AluJb SINE Alu -181 131 1 10948 218 39 29 chr15 30702785 30704749 -70675772 - L1MB2 LINE L1 -341 5651 3708 2030 132 10 10 chr15 30704749 30705060 -70675461 - AluSx SINE Alu -1 311 1 10948 218 39 29 chr15 30705060 30707044 -70673477 - L1MB2 LINE L1 -2284 3708 1642 1555 195 26 20 chr15 30707044 30707346 -70673175 - AluJo SINE Alu -8 304 1 10948 218 39 29 chr15 30707346 30707372 -70673149 - L1MB2 LINE L1 -4350 1642 1618 14575 38 2 1 chr15 30707611 30710155 -70670366 - L1PA4 LINE L1 -5 6150 3607 * 20056 73 2 0 chr15 30710151 30712751 -70667770 - L1PA4 LINE L1 -3535 2611 7 7654 146 26 10 chr15 30712754 30714243 -70666278 - L1PBa LINE L1 -4098 2765 1093 2638 228 89 21 chr15 30714247 30715097 -70665424 - L1PBa LINE L1 -5818 1045 138 2074 259 39 34 chr15 30715104 30715787 -70664734 - L1MB2 LINE L1 -4796 1095 417 1385 316 64 58 chr15 30715804 30716694 -70663827 - L1M3a LINE L1 -5226 729 2 * 2454 252 26 19 chr15 30716692 30717476 -70663045 - L1M4c LINE L1 -4522 1379 400 350 293 18 61 chr15 30717634 30717798 -70662723 - L1M4c LINE L1 -5487 404 248 326 317 86 62 chr15 30717907 30718197 -70662324 - L1MB2 LINE L1 -5503 388 92 934 287 58 37 chr15 30718291 30719164 -70661357 - L1MEc LINE L1 -3316 2899 2041 370 241 70 70 chr15 30719337 30719537 -70660984 - L1MEc LINE L1 -4443 1772 1574 630 277 89 29 chr15 30719854 30720353 -70660168 - L1MEc LINE L1 -4669 1637 1112 547 226 19 45 chr15 30720599 30720754 -70659767 + L2 LINE L2 3163 3313 0 315 0 0 0 chr15 30721556 30721591 -70658930 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr15 30721818 30721840 -70658681 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr15 30722441 30722468 -70658053 + AT_rich Low_complexity Low_complexity 1 27 0 25 83 0 0 chr15 30723000 30723060 -70657461 + AT_rich Low_complexity Low_complexity 1 60 0 6129 181 36 15 chr15 30725040 30726865 -70653656 + L1MC1 LINE L1 4463 6328 -5 21 0 0 0 chr15 30729065 30729086 -70651435 + AT_rich Low_complexity Low_complexity 1 21 0 27495 35 4 0 chr15 30731480 30735395 -70645126 - L1PA4 LINE L1 -214 5941 2018 208 275 55 22 chr15 30735545 30735636 -70644885 + L2 LINE L2 3220 3313 0 3472 136 45 7 chr15 30735737 30736317 -70644204 + MER7C DNA MER2_type 1 602 0 242 226 19 0 chr15 30736329 30736382 -70644139 + (CATA)n Simple_repeat Simple_repeat 1 54 0 347 60 20 0 chr15 30736681 30736731 -70643790 + (TCCA)n Simple_repeat Simple_repeat 2 52 0 807 221 0 0 chr15 30737243 30737401 -70643120 - FRAM SINE Alu -18 158 1 6631 65 8 2 chr15 30737469 30738366 -70642155 + L1PA7 LINE L1 5264 6165 0 900 203 145 0 chr15 30738369 30738576 -70641945 - MLT1D LTR MaLR -124 381 145 248 253 96 82 chr15 30739618 30739764 -70640757 + MIR3 SINE MIR 51 198 -10 196 383 0 0 chr15 30740210 30740270 -70640251 + L2 LINE L2 3252 3311 -2 2055 57 57 37 chr15 30741521 30741818 -70638703 + AluY SINE Alu 1 303 -8 207 0 0 0 chr15 30741818 30741841 -70638680 + (CA)n Simple_repeat Simple_repeat 2 24 0 285 295 16 66 chr15 30742758 30742880 -70637641 - L2 LINE L2 0 3272 3157 246 246 58 0 chr15 30743740 30743809 -70636712 - L2 LINE L2 -1082 2232 2160 327 253 89 0 chr15 30743830 30743909 -70636612 - MER20 DNA MER1_type -110 109 24 1120 88 0 0 chr15 30743909 30744057 -70636464 + AluSp/q SINE Alu 162 309 -4 228 233 0 0 chr15 30744084 30744127 -70636394 - LTR33 LTR ERVL -153 368 326 7251 40 8 0 chr15 30744131 30745136 -70635385 + L1PA7 LINE L1 5135 6146 -8 21 0 0 0 chr15 30746259 30746280 -70634241 + AT_rich Low_complexity Low_complexity 1 21 0 1779 214 92 83 chr15 30747046 30747325 -70633196 + L1MC5 LINE L1 7025 7300 -661 883 179 40 30 chr15 30747325 30747526 -70632995 + MER3 DNA MER1_type 3 205 -4 1779 214 92 83 chr15 30747526 30748138 -70632383 + L1MC5 LINE L1 7300 7924 -37 302 212 153 17 chr15 30748241 30748359 -70632162 + L1MB8 LINE L1 93 226 -6633 2709 215 75 68 chr15 30748708 30749490 -70631031 + L1MB8 LINE L1 5511 6312 -677 2358 104 0 7 chr15 30749490 30749798 -70630723 + AluSg SINE Alu 5 310 0 2709 215 75 68 chr15 30749798 30750474 -70630047 + L1MB8 LINE L1 6312 6982 -7 1437 225 70 100 chr15 30750556 30751115 -70629406 - MLT1E LTR MaLR 0 593 1 896 235 20 20 chr15 30751304 30751508 -70629013 - MIR SINE MIR 0 262 59 1873 139 65 46 chr15 30752259 30752307 -70628214 - THE1C LTR MaLR 0 375 329 1874 138 76 17 chr15 30752307 30752661 -70627860 - THE1C LTR MaLR 0 375 1 1873 139 65 46 chr15 30752661 30752980 -70627541 - THE1C LTR MaLR -46 329 1 6952 118 10 27 chr15 30752980 30754059 -70626462 - THE1C-int LTR MaLR 0 1580 520 15523 61 1 1 chr15 30754159 30756105 -70624416 - L1P LINE L1 -4193 1953 7 468 349 92 56 chr15 30756659 30757391 -70623130 - L2 LINE L2 -3 3269 2530 1257 226 173 119 chr15 30757407 30757921 -70622600 - MER39 LTR ERV1 0 707 1 201 345 14 36 chr15 30757930 30758069 -70622452 - L2 LINE L2 -811 2503 2368 518 276 174 5 chr15 30758443 30758639 -70621882 + MIR SINE MIR 20 248 -14 709 264 48 60 chr15 30758697 30758947 -70621574 + MIR SINE MIR 2 248 -14 199 314 0 58 chr15 30759173 30759259 -70621262 - L3 LINE CR1 -314 1263 1183 27 29 0 0 chr15 30760780 30760814 -70619707 + AT_rich Low_complexity Low_complexity 1 34 0 183 304 133 44 chr15 30760862 30761020 -70619501 + L2 LINE L2 2332 2503 -811 21 0 0 0 chr15 30761439 30761460 -70619061 + AT_rich Low_complexity Low_complexity 1 21 0 1435 285 168 12 chr15 30761529 30761989 -70618532 + HAL1 LINE L1 11 582 -1925 423 0 0 0 chr15 30761989 30762036 -70618485 + (CA)n Simple_repeat Simple_repeat 2 48 0 1435 285 168 12 chr15 30762036 30762157 -70618364 + HAL1 LINE L1 582 683 -1824 275 269 39 29 chr15 30762190 30762294 -70618227 + MER21B LTR ERV1 1 105 -758 * 3754 221 55 9 chr15 30762293 30763090 -70617431 + MER21B LTR ERV1 19 852 -11 3682 256 78 43 chr15 30763096 30764666 -70615855 + HAL1 LINE L1 740 2364 -143 261 396 0 0 chr15 30765376 30765535 -70614986 + (TGG)n Simple_repeat Simple_repeat 1 159 0 411 278 93 0 chr15 30766853 30767004 -70613517 + L1ME4a LINE L1 5594 5758 -363 281 249 72 50 chr15 30767103 30767284 -70613237 + L1ME4a LINE L1 5807 5991 -130 7791 138 17 10 chr15 30767488 30767628 -70612893 - L1MA2 LINE L1 -103 6201 6063 1538 199 20 13 chr15 30767628 30767929 -70612592 - AluJb SINE Alu -9 303 1 7791 138 17 10 chr15 30767929 30770052 -70610469 - L1MA2 LINE L1 -241 6063 3918 477 338 154 40 chr15 30770470 30771196 -70609325 - L2 LINE L2 -514 2800 1992 352 350 10 0 chr15 30771436 30771536 -70608985 + L2 LINE L2 3197 3297 -16 1623 298 95 81 chr15 30771637 30773518 -70607003 - L2 LINE L2 -106 3207 1238 189 329 47 24 chr15 30774513 30774598 -70605923 + MIR3 SINE MIR 85 171 -37 27 108 0 0 chr15 30774773 30774884 -70605637 + AT_rich Low_complexity Low_complexity 1 111 0 6075 166 37 5 chr15 30775866 30777278 -70603243 + L1MC1 LINE L1 4873 6322 -11 385 347 39 20 chr15 30777282 30777844 -70602677 - L1MEd LINE L1 -3386 2743 2171 290 273 86 65 chr15 30778628 30779046 -70601475 - L1MEd LINE L1 -4882 1237 811 1219 88 82 0 chr15 30780163 30780345 -70600176 + MER30 DNA MER1_type 1 197 -33 339 25 0 0 chr15 30783177 30783217 -70597304 + (CA)n Simple_repeat Simple_repeat 2 41 0 5715 204 23 49 chr15 30783579 30784623 -70595898 + L1 LINE L1 2146 3216 -2930 224 30 30 0 chr15 30784623 30784656 -70595865 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1891 114 7 4 chr15 30784662 30784934 -70595587 - AluSg SINE Alu -37 273 1 5715 204 23 49 chr15 30784934 30785424 -70595097 + L1 LINE L1 3221 3647 -2499 561 368 79 21 chr15 30785802 30786221 -70594300 - L2 LINE L2 -458 2856 2414 6076 167 25 17 chr15 30786539 30788750 -70591771 - L1MA9 LINE L1 -7 6305 4078 263 188 43 0 chr15 30789712 30789781 -70590740 + (TA)n Simple_repeat Simple_repeat 2 73 0 339 96 0 0 chr15 30789785 30789837 -70590684 + (TG)n Simple_repeat Simple_repeat 2 53 0 284 86 0 57 chr15 30789900 30789970 -70590551 + (TA)n Simple_repeat Simple_repeat 2 67 0 183 162 0 0 chr15 30791126 30791163 -70589358 + A-rich Low_complexity Low_complexity 1 37 0 633 214 10 112 chr15 30792303 30792509 -70588012 - MARNA DNA Mariner -65 521 337 356 270 100 87 chr15 30792700 30793000 -70587521 - L3 LINE CR1 -173 1404 1101 1069 329 29 27 chr15 30793270 30793753 -70586768 - L3 LINE CR1 -566 1011 528 207 0 0 0 chr15 30795076 30795099 -70585422 + (CAAAAA)n Simple_repeat Simple_repeat 1 23 0 211 349 46 37 chr15 30795494 30795603 -70584918 - MIR SINE MIR -79 129 20 1273 79 0 0 chr15 30795914 30796078 -70584443 - AluY SINE Alu -18 293 130 438 242 0 76 chr15 30796078 30796235 -70584286 + MER5B DNA MER1_type 34 178 0 1215 135 17 59 chr15 30796923 30797160 -70583361 + L1PA15 LINE L1 5938 6164 -1 683 265 110 0 chr15 30797616 30797816 -70582705 - MER58A DNA MER1_type -2 222 1 754 219 11 38 chr15 30797824 30798007 -70582514 - MER5B DNA MER1_type 0 178 1 1763 190 0 3 chr15 30798881 30799192 -70581329 - AluJb SINE Alu 0 312 3 1028 190 25 0 chr15 30799323 30799523 -70580998 + MER57A LTR ERV1 3 207 -196 1868 147 60 9 chr15 30799534 30799868 -70580653 + MER61C LTR ERV1 84 434 0 596 213 14 118 chr15 30799868 30800101 -70580420 + MER61C-int LTR ERV1 2 470 -5032 302 264 0 23 chr15 30800218 30800305 -70580216 + MER61C-int LTR ERV1 272 356 -4861 2328 57 0 0 chr15 30800306 30800639 -70579882 + AluY SINE Alu 2 334 0 379 125 0 0 chr15 30800656 30800712 -70579809 + Alu SINE Alu 237 292 -8 429 141 141 58 chr15 30800712 30800833 -70579688 + MER61C-int LTR ERV1 347 477 -4740 979 117 113 27 chr15 30800861 30801097 -70579424 + MER61C-int LTR ERV1 695 4128 -1089 * 2984 165 68 26 chr15 30801095 30802365 -70578156 + MER61C-int LTR ERV1 499 4918 -299 696 130 0 0 chr15 30802376 30802484 -70578037 - AluSg/x SINE Alu -10 300 193 2590 153 7 15 chr15 30802484 30802963 -70577558 + MER61C-int LTR ERV1 1213 2010 -3576 1942 153 32 3 chr15 30802950 30803297 -70577224 + MER61C-int LTR ERV1 4041 4397 -3140 * 7365 126 23 27 chr15 30803289 30804761 -70575760 + MER61C-int LTR ERV1 2831 5217 0 560 189 18 0 chr15 30804776 30804887 -70575634 + MER61C LTR ERV1 84 196 -238 6993 59 1 5 chr15 30804887 30805938 -70574583 + L1PA7 LINE L1 5102 6149 -5 4230 177 35 25 chr15 30806013 30807183 -70573338 + L1MB8 LINE L1 4999 6176 -2 566 289 81 60 chr15 30807376 30807822 -70572699 + LTR68 LTR ERV1 12 466 -274 3958 141 74 16 chr15 30809552 30810254 -70570267 + Tigger2 DNA MER2_type 2 744 -1974 1648 171 43 0 chr15 30810340 30810639 -70569882 - AluJo SINE Alu 0 312 1 1575 128 12 0 chr15 30810639 30810882 -70569639 + Tigger2 DNA MER2_type 2473 2718 0 2203 72 0 4 chr15 30810991 30811269 -70569252 - AluY SINE Alu -14 297 21 394 235 12 0 chr15 30812624 30812705 -70567816 + L1MC5 LINE L1 6712 6793 -1168 599 226 5 115 chr15 30812709 30812926 -70567595 + L1ME3A LINE L1 5698 5890 -280 21 0 0 0 chr15 30812973 30812994 -70567527 + AT_rich Low_complexity Low_complexity 1 21 0 326 319 60 42 chr15 30815460 30815626 -70564895 + MIR SINE MIR 20 188 -74 742 251 172 52 chr15 30815636 30815853 -70564668 + L2 LINE L2 2453 2642 -672 2426 66 0 0 chr15 30815853 30816156 -70564365 + AluY SINE Alu 4 306 -5 742 251 172 52 chr15 30816156 30816344 -70564177 + L2 LINE L2 2642 2907 -407 218 225 0 0 chr15 30816326 30816366 -70564155 + L2 LINE L2 3008 3047 -266 * 188 277 21 0 chr15 30816403 30816450 -70564071 + L2 LINE L2 3216 3263 -9 * 219 284 74 12 chr15 30816448 30816529 -70563992 - MIR SINE MIR -152 110 25 234 0 0 0 chr15 30816607 30816633 -70563888 + (TC)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr15 30817997 30818020 -70562501 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr15 30818144 30818180 -70562341 + AT_rich Low_complexity Low_complexity 1 36 0 265 279 77 87 chr15 30819562 30819874 -70560647 + L3 LINE CR1 631 939 -638 189 94 0 0 chr15 30820581 30820613 -70559908 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 2338 76 0 0 chr15 30820617 30820907 -70559614 - AluSg SINE Alu -20 290 1 1668 144 58 17 chr15 30821084 30821376 -70559145 - AluSx SINE Alu -8 304 1 1358 147 5 23 chr15 30821501 30821719 -70558802 - AluSx SINE Alu -98 214 1 674 281 75 20 chr15 30821736 30821935 -70558586 + MIR SINE MIR 43 252 -10 293 181 0 12 chr15 30821959 30822028 -70558493 + (CTA)n Simple_repeat Simple_repeat 2 71 -12 1141 186 115 50 chr15 30822028 30822351 -70558170 + MER2 DNA MER2_type 1 344 0 293 181 0 12 chr15 30822351 30822364 -70558157 + (CTA)n Simple_repeat Simple_repeat 71 83 0 311 256 78 32 chr15 30822886 30823062 -70557459 - L1MA10 LINE L1 -1 6333 5990 1420 182 14 120 chr15 30823217 30823635 -70556886 - MLT1A2 LTR MaLR 0 374 1 257 324 116 31 chr15 30823637 30823896 -70556625 - L2 LINE L2 -997 2317 2037 309 376 108 9 chr15 30823956 30824169 -70556352 - MIR SINE MIR -9 253 20 212 250 75 38 chr15 30824719 30824799 -70555722 - MIR SINE MIR -49 213 131 1841 107 44 7 chr15 30825191 30825494 -70555027 - AluSg SINE Alu 0 313 1 1707 263 82 26 chr15 30826106 30826983 -70553538 + L2 LINE L2 2384 3311 -2 755 294 119 36 chr15 30827308 30827886 -70552635 + L1ME4a LINE L1 5495 6120 -1 198 304 43 75 chr15 30827969 30828130 -70552391 - L2 LINE L2 0 3313 3158 2234 102 3 0 chr15 30828135 30828429 -70552092 + AluSg SINE Alu 1 295 -15 645 228 34 7 chr15 30830176 30830325 -70550196 + AluJb SINE Alu 137 289 -23 27 0 0 0 chr15 30830325 30830352 -70550169 + AT_rich Low_complexity Low_complexity 1 27 0 5444 144 135 19 chr15 30830738 30831406 -70549115 - Tigger3b DNA MER2_type -1811 1217 628 2206 116 0 3 chr15 30831406 30831717 -70548804 + AluSx SINE Alu 3 312 0 5444 144 135 19 chr15 30831717 30832139 -70548382 - Tigger3b DNA MER2_type -2400 628 1 463 291 55 22 chr15 30832277 30832459 -70548062 - MIR SINE MIR -28 234 47 369 313 125 90 chr15 30832802 30832907 -70547614 - L2 LINE L2 -356 2958 2858 1972 129 0 7 chr15 30832907 30833228 -70547293 + AluSq SINE Alu 1 319 0 369 313 125 90 chr15 30833228 30833376 -70547145 - L2 LINE L2 -456 2858 2717 601 98 0 0 chr15 30833376 30833468 -70547053 - L1MB3 LINE L1 -12 6171 6080 369 313 125 90 chr15 30833468 30834050 -70546471 - L2 LINE L2 -597 2717 2062 2161 83 0 4 chr15 30834050 30834326 -70546195 + AluSx SINE Alu 14 288 -24 369 313 125 90 chr15 30834326 30834693 -70545828 - L2 LINE L2 -1252 2062 1710 326 279 115 36 chr15 30835102 30835267 -70545254 + MIR SINE MIR 36 213 -49 537 188 0 0 chr15 30836136 30836237 -70544284 + FAM SINE Alu 83 183 -2 1008 192 211 11 chr15 30836273 30836637 -70543884 - LTR33A LTR ERVL 0 523 87 253 226 206 10 chr15 30836887 30836989 -70543532 - L2 LINE L2 -6 3307 3186 755 258 131 7 chr15 30837747 30838030 -70542491 + L1MC4 LINE L1 5584 5901 -1907 405 0 0 0 chr15 30838035 30838080 -70542441 + (TG)n Simple_repeat Simple_repeat 1 45 0 218 317 37 24 chr15 30839991 30840073 -70540448 - L2 LINE L2 -86 3186 3104 28 0 0 0 chr15 30840179 30840207 -70540314 + AT_rich Low_complexity Low_complexity 1 28 0 335 326 11 0 chr15 30840312 30840401 -70540120 + MIR3 SINE MIR 67 156 -52 444 67 0 0 chr15 30842467 30842527 -70537994 + (CA)n Simple_repeat Simple_repeat 1 60 0 2657 109 5 29 chr15 30843224 30843635 -70536886 - THE1C-int LTR MaLR -1177 403 3 1581 184 73 20 chr15 30843639 30843993 -70536528 - THE1C LTR MaLR -2 373 1 201 147 0 0 chr15 30845509 30845543 -70534978 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 1699 177 101 22 chr15 30846097 30846464 -70534057 - MSTD LTR MaLR 0 396 1 264 77 26 0 chr15 30846815 30846854 -70533667 - MLT2B1 LTR ERVL 0 520 481 369 0 0 0 chr15 30846857 30846898 -70533623 + (CA)n Simple_repeat Simple_repeat 2 42 0 227 235 0 7 chr15 30846912 30847048 -70533473 + (TA)n Simple_repeat Simple_repeat 1 135 0 300 309 21 0 chr15 30847048 30847145 -70533376 + L1MC4 LINE L1 6611 6709 -1333 230 163 41 0 chr15 30847153 30847202 -70533319 + L1MC4 LINE L1 6653 6703 -1339 1932 175 112 25 chr15 30847232 30847645 -70532876 - MLT2B1 LTR ERVL -13 541 43 754 255 22 81 chr15 30847915 30848186 -70532335 - MIR SINE MIR -1 261 7 567 241 87 51 chr15 30849262 30849515 -70531006 + MIR SINE MIR 1 262 0 2030 273 83 23 chr15 30850075 30850405 -70530116 + L1ME4a LINE L1 3932 4241 -1905 1965 155 28 36 chr15 30850405 30850798 -70529723 + MLT1B LTR MaLR 1 390 0 2030 273 83 23 chr15 30850798 30851505 -70529016 + L1ME4a LINE L1 4241 5147 -999 427 240 47 18 chr15 30851522 30851581 -70528940 + L1ME4a LINE L1 5219 5275 -895 2015 119 7 7 chr15 30851581 30851876 -70528645 + AluSq SINE Alu 1 295 -18 216 0 0 0 chr15 30851876 30851900 -70528621 + (TA)n Simple_repeat Simple_repeat 2 25 0 427 240 47 18 chr15 30851900 30852085 -70528436 + L1ME4a LINE L1 5274 5469 -701 271 299 61 100 chr15 30852092 30852601 -70527920 + L2 LINE L2 2825 3313 0 683 227 0 0 chr15 30854137 30854269 -70526252 + FLAM_A SINE Alu 2 133 0 1712 100 128 0 chr15 30856077 30856350 -70524171 - AluSx SINE Alu 0 305 1 281 190 20 40 chr15 30857535 30857635 -70522886 + L1MC5 LINE L1 7828 7925 -36 202 288 0 0 chr15 30857639 30857698 -70522823 + A-rich Low_complexity Low_complexity 2 60 0 249 167 0 0 chr15 30858214 30858268 -70522253 + (TA)n Simple_repeat Simple_repeat 1 54 0 770 135 71 0 chr15 30859060 30859201 -70521320 - MIR SINE MIR -65 197 47 200 258 93 52 chr15 30859232 30859329 -70521192 + L2 LINE L2 2167 2267 -1047 200 325 26 39 chr15 30859429 30859583 -70520938 + L2 LINE L2 2702 2853 -461 204 305 171 0 chr15 30859854 30859959 -70520562 + L2 LINE L2 3191 3313 0 21 0 0 0 chr15 30862613 30862634 -70517887 + AT_rich Low_complexity Low_complexity 1 21 0 287 203 13 0 chr15 30863152 30863231 -70517290 + (TA)n Simple_repeat Simple_repeat 1 80 0 1556 205 10 0 chr15 30865243 30865541 -70514980 + AluJo SINE Alu 1 301 -11 484 207 207 7 chr15 30866341 30866486 -70514035 + MER5A DNA MER1_type 9 182 -7 712 282 46 18 chr15 30868093 30868419 -70512102 + L1ME4a LINE L1 5562 5896 -225 21 36 0 0 chr15 30868553 30868581 -70511940 + AT_rich Low_complexity Low_complexity 1 28 0 180 290 43 43 chr15 30870381 30870450 -70510071 + L2 LINE L2 3225 3293 -20 1329 223 18 7 chr15 30870622 30870750 -70509771 + AluJo SINE Alu 1 126 -186 2482 75 0 0 chr15 30870750 30871058 -70509463 + AluY SINE Alu 1 308 -3 1329 223 18 7 chr15 30871058 30871207 -70509314 + AluJo SINE Alu 126 281 -31 564 289 147 5 chr15 30871666 30871870 -70508651 - MIR SINE MIR -2 260 28 21 82 0 0 chr15 30873218 30873267 -70507254 + AT_rich Low_complexity Low_complexity 1 49 0 291 270 67 22 chr15 30873412 30873501 -70507020 - L2 LINE L2 -8 3264 3172 368 322 75 7 chr15 30874164 30874310 -70506211 - MIR SINE MIR -57 205 50 212 175 0 0 chr15 30875531 30875571 -70504950 + A-rich Low_complexity Low_complexity 1 40 0 189 74 0 0 chr15 30877806 30877833 -70502688 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 318 316 171 5 chr15 30878110 30878303 -70502218 - L1ME4a LINE L1 -135 5986 5762 548 293 103 18 chr15 30878309 30878635 -70501886 - L1ME4a LINE L1 -436 5685 5309 1062 165 127 24 chr15 30879360 30879651 -70500870 - MER5C DNA MER1_type 0 324 4 561 216 181 21 chr15 30879860 30880063 -70500458 + MIR SINE MIR 33 262 0 209 321 71 27 chr15 30880303 30880487 -70500034 - L2 LINE L2 -11 3302 3111 1190 173 0 10 chr15 30880948 30881156 -70499365 + AluJb SINE Alu 83 288 -24 216 267 0 0 chr15 30882588 30882633 -70497888 - MIR SINE MIR -61 147 103 338 196 110 69 chr15 30883946 30884119 -70496402 + MER112 DNA MER1_type 33 212 -48 1814 125 194 8 chr15 30884398 30884759 -70495762 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr15 30885155 30885177 -70495344 + AT_rich Low_complexity Low_complexity 1 22 0 1959 122 17 10 chr15 30886789 30887077 -70493444 - AluSx SINE Alu -22 290 1 251 338 88 40 chr15 30887111 30887259 -70493262 - L2 LINE L2 0 3272 3118 287 366 59 30 chr15 30887639 30888011 -70492510 - L2 LINE L2 -656 2658 2276 249 302 0 0 chr15 30888060 30888113 -70492408 + polypurine Low_complexity Low_complexity 4 56 0 2100 126 0 10 chr15 30888129 30888431 -70492090 + AluSq SINE Alu 1 299 -14 59 38 0 0 chr15 30888940 30889020 -70491501 + AT_rich Low_complexity Low_complexity 1 80 0 718 259 72 56 chr15 30889268 30889403 -70491118 + HAL1 LINE L1 791 922 -1585 2356 90 3 0 chr15 30889403 30889713 -70490808 + AluSp SINE Alu 1 311 -2 718 259 72 56 chr15 30889713 30890079 -70490442 + HAL1 LINE L1 922 1300 -1207 431 306 53 34 chr15 30890162 30890368 -70490153 - MLT1K LTR MaLR -236 352 143 878 267 120 6 chr15 30890447 30890806 -70489715 + HAL1 LINE L1 1385 1784 -723 31 26 0 0 chr15 30891873 30891911 -70488610 + AT_rich Low_complexity Low_complexity 1 38 0 829 285 64 27 chr15 30892953 30893283 -70487238 + L2 LINE L2 2967 3308 -5 292 172 62 0 chr15 30894596 30894660 -70485861 + L1ME LINE L1 5773 5840 -281 226 319 90 0 chr15 30894730 30894874 -70485647 + MER103 DNA DNA 9 165 -1 23 0 0 0 chr15 30897249 30897272 -70483249 + AT_rich Low_complexity Low_complexity 1 23 0 276 312 130 47 chr15 30897385 30897600 -70482921 + MIR SINE MIR 30 262 0 28 29 0 0 chr15 30898112 30898147 -70482374 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr15 30898157 30898182 -70482339 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr15 30898192 30898214 -70482307 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr15 30898225 30898246 -70482275 + (TA)n Simple_repeat Simple_repeat 1 21 0 418 107 13 13 chr15 30898508 30898583 -70481938 + (TA)n Simple_repeat Simple_repeat 2 76 0 1534 76 5 0 chr15 30899581 30899791 -70480730 + L1PA7 LINE L1 5941 6151 -3 432 303 74 0 chr15 30901012 30901174 -70479347 + MER5B DNA MER1_type 2 175 -3 737 277 214 21 chr15 30902088 30902815 -70477706 - L2 LINE L2 -5 3308 2450 323 246 0 0 chr15 30902819 30902884 -70477637 + MIR SINE MIR 181 245 -17 4187 112 19 6 chr15 30903071 30903707 -70476814 - LTR9B LTR ERV1 0 644 1 1075 255 105 21 chr15 30904959 30905339 -70475182 - LTR16B LTR ERVL -2 462 51 423 292 23 38 chr15 30905462 30905751 -70474770 - MERVL LTR ERVL -204 5281 4557 701 356 25 13 chr15 30905871 30906267 -70474254 - ERVL LTR ERVL -895 4869 4469 389 251 49 77 chr15 30906290 30906473 -70474048 - LTR16B LTR ERVL -284 180 3 725 214 98 6 chr15 30907443 30907616 -70472905 - MIR SINE MIR -69 193 5 279 251 147 80 chr15 30907871 30908034 -70472487 - MER102b DNA MER1_type -9 332 159 1947 156 0 7 chr15 30908034 30908336 -70472185 + AluJo SINE Alu 1 300 -12 322 278 220 16 chr15 30908602 30908793 -70471728 + MIR SINE MIR 2 231 -31 323 192 19 115 chr15 30908793 30908897 -70471624 + L1MEc LINE L1 2052 2145 -4251 1942 137 30 3 chr15 30908901 30909200 -70471321 + AluSx SINE Alu 1 307 -5 1082 205 87 17 chr15 30909234 30909590 -70470931 + L1MEc LINE L1 2103 2483 -3913 346 274 52 22 chr15 30909706 30909841 -70470680 - L1MC4a LINE L1 -1871 5937 5799 442 326 10 16 chr15 30910499 30910686 -70469835 - MIR SINE MIR -51 211 29 229 208 0 21 chr15 30911549 30911597 -70468924 + MLT1I LTR MaLR 324 370 -39 382 358 49 57 chr15 30911914 30912072 -70468449 + L2 LINE L2 3029 3186 -86 791 305 99 25 chr15 30912072 30912557 -70467964 - LTR33 LTR ERVL 0 521 1 382 358 49 57 chr15 30912557 30912644 -70467877 + L2 LINE L2 3186 3272 0 1532 178 22 29 chr15 30913238 30913552 -70466969 + AluJo SINE Alu 1 312 0 26 0 0 0 chr15 30914975 30915001 -70465520 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr15 30916673 30916694 -70463827 + AT_rich Low_complexity Low_complexity 1 21 0 566 238 42 36 chr15 30916759 30916927 -70463594 + MIR SINE MIR 84 252 -10 2345 152 35 62 chr15 30917036 30917549 -70462972 + MLT1D LTR MaLR 7 505 0 220 242 16 0 chr15 30917565 30917627 -70462894 + (TTAA)n Simple_repeat Simple_repeat 2 64 0 264 295 161 18 chr15 30917980 30918092 -70462429 + MIR SINE MIR 20 147 -115 1912 187 15 47 chr15 30919338 30919739 -70460782 - MLT1B LTR MaLR 0 390 3 2214 80 43 13 chr15 30919802 30920103 -70460418 - AluY SINE Alu -1 310 1 5385 188 22 27 chr15 30924028 30924739 -70455782 - L1MB1 LINE L1 -3 6165 5452 369 0 0 0 chr15 30924739 30924780 -70455741 + (TG)n Simple_repeat Simple_repeat 2 42 0 5385 188 22 27 chr15 30924780 30926075 -70454446 - L1MB1 LINE L1 -716 5452 4166 417 256 113 0 chr15 30926076 30926209 -70454312 - MIR SINE MIR -48 214 67 1828 195 39 68 chr15 30926361 30926879 -70453642 + MLT1D LTR MaLR 1 503 -2 24 77 0 0 chr15 30927089 30927141 -70453380 + AT_rich Low_complexity Low_complexity 1 52 0 781 285 14 14 chr15 30927354 30927575 -70452946 - MIR SINE MIR 0 262 42 1795 176 17 36 chr15 30928382 30928422 -70452099 + L1PB4 LINE L1 5737 5776 -380 396 0 0 0 chr15 30928422 30928466 -70452055 + (TG)n Simple_repeat Simple_repeat 2 45 0 1795 176 17 36 chr15 30928466 30928719 -70451802 + L1PB4 LINE L1 5776 6031 -125 2254 109 0 0 chr15 30928719 30929021 -70451500 + AluSx SINE Alu 1 302 -10 1795 176 17 36 chr15 30929021 30929129 -70451392 + L1PB4 LINE L1 6031 6139 -17 259 274 0 0 chr15 30929839 30929901 -70450620 - L2 LINE L2 0 3313 3252 243 362 43 35 chr15 30929956 30930072 -70450449 + MIR SINE MIR 17 133 -75 210 306 0 42 chr15 30930716 30930788 -70449733 + L2 LINE L2 3200 3268 -4 344 311 156 0 chr15 30930834 30931001 -70449520 + MIR SINE MIR 65 257 -5 227 268 110 24 chr15 30931094 30931176 -70449345 + MIR3 SINE MIR 115 203 -5 21 0 0 0 chr15 30931756 30931777 -70448744 + AT_rich Low_complexity Low_complexity 1 21 0 514 121 48 0 chr15 30932345 30932428 -70448093 + L1MA2 LINE L1 6218 6304 0 2159 131 0 0 chr15 30933212 30933518 -70447003 + AluSq SINE Alu 1 306 -7 183 100 0 0 chr15 30933560 30933590 -70446931 + (TG)n Simple_repeat Simple_repeat 2 31 0 263 289 61 18 chr15 30934287 30934401 -70446120 + L1MC4 LINE L1 6614 6732 -1310 234 186 0 0 chr15 30935480 30935523 -70444998 + L2 LINE L2 3264 3306 -7 495 293 56 98 chr15 30935732 30936254 -70444267 - MLT1L LTR MaLR -7 608 5 375 289 151 44 chr15 30938249 30938685 -70441836 + L1ME LINE L1 5320 5802 -319 205 167 0 0 chr15 30940652 30940688 -70439833 + GA-rich Low_complexity Low_complexity 1 36 0 1891 157 3 0 chr15 30943380 30943674 -70436847 - AluSx SINE Alu -16 296 2 379 305 61 39 chr15 30943927 30944589 -70435932 - L1MEd LINE L1 -4516 1613 930 1822 42 0 42 chr15 30944755 30944992 -70435529 - AluY SINE Alu -5 306 80 228 333 19 37 chr15 30945209 30945317 -70435204 + MLT1I LTR MaLR 103 208 -201 3768 170 42 0 chr15 30945326 30946016 -70434505 - L1PA16 LINE L1 -6 6160 5442 1526 84 55 8 chr15 30946060 30946298 -70434223 + LTR7 LTR ERV1 164 412 -38 282 326 73 45 chr15 30946315 30946493 -70434028 + MLT1J2 LTR MaLR 268 450 0 2342 123 8 35 chr15 30947317 30947691 -70432830 - THE1B LTR MaLR 0 364 1 28 48 0 0 chr15 30947757 30947799 -70432722 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr15 30947859 30947894 -70432627 + AT_rich Low_complexity Low_complexity 1 35 0 673 338 113 31 chr15 30948004 30948481 -70432040 - LTR33 LTR ERVL 0 521 6 22 35 0 0 chr15 30948555 30948584 -70431937 + AT_rich Low_complexity Low_complexity 1 29 0 180 411 22 35 chr15 30949107 30949338 -70431183 + L2 LINE L2 2816 3043 -229 207 286 54 0 chr15 30950005 30950061 -70430460 + L2 LINE L2 3210 3268 -4 21 0 0 0 chr15 30950983 30951004 -70429517 + AT_rich Low_complexity Low_complexity 1 21 0 1049 239 42 24 chr15 30951137 30951622 -70428899 - MLT1E LTR MaLR -8 585 1 3492 169 77 54 chr15 30952730 30953389 -70427132 - L1MB5 LINE L1 -17 6157 5476 261 83 0 0 chr15 30953389 30953425 -70427096 + (TG)n Simple_repeat Simple_repeat 1 36 0 3492 169 77 54 chr15 30953425 30953557 -70426964 - L1MB5 LINE L1 -698 5476 5348 448 224 61 7 chr15 30953594 30953741 -70426780 - LTR37A LTR ERV1 -59 367 213 2549 242 36 36 chr15 30953916 30954632 -70425889 - MER21B LTR ERV1 -11 852 137 1628 167 9 3 chr15 30954816 30955134 -70425387 + L1MA4 LINE L1 5970 6289 -11 266 246 33 0 chr15 30955136 30955197 -70425324 + L1MB1 LINE L1 5893 5955 -213 254 305 70 55 chr15 30955207 30955335 -70425186 + L2 LINE L2 3139 3268 -4 320 332 65 33 chr15 30955462 30955676 -70424845 + L2 LINE L2 1951 2171 -1143 4055 175 38 31 chr15 30955951 30956855 -70423666 + L1 LINE L1 3835 4744 -1402 2295 166 30 129 chr15 30956889 30957011 -70423510 - MLT2B2 LTR ERVL -5 510 378 1556 197 0 43 chr15 30957011 30957310 -70423211 + AluJo SINE Alu 1 286 -26 2295 166 30 129 chr15 30957310 30957325 -70423196 - MLT2B2 LTR ERVL -137 378 363 2187 104 3 0 chr15 30957325 30957638 -70422883 + AluSp SINE Alu 1 314 0 243 0 0 0 chr15 30957640 30957667 -70422854 + (TG)n Simple_repeat Simple_repeat 2 28 0 2295 166 30 129 chr15 30957667 30958088 -70422433 - MLT2B2 LTR ERVL -153 362 1 316 360 82 44 chr15 30958088 30958493 -70422028 + L2 LINE L2 2179 2598 -716 286 310 70 45 chr15 30960090 30960290 -70420231 - MIR3 SINE MIR -3 205 1 390 313 125 7 chr15 30960430 30960574 -70419947 - MIR3 SINE MIR -7 201 41 241 315 0 0 chr15 30963655 30963709 -70416812 - MER5A DNA MER1_type -61 128 75 2434 236 63 26 chr15 30963709 30963983 -70416538 - L1MEc LINE L1 -939 5276 5014 411 21 0 0 chr15 30963983 30964031 -70416490 + (TG)n Simple_repeat Simple_repeat 1 48 0 2434 236 63 26 chr15 30964031 30964569 -70415952 - L1MEc LINE L1 -1201 5014 4434 1610 265 44 13 chr15 30964601 30965129 -70415392 - L1ME1 LINE L1 -5 6161 5618 290 200 187 0 chr15 30965129 30965204 -70415317 - L1ME LINE L1 -501 5663 5575 * 1126 240 42 0 chr15 30965203 30965486 -70415035 - L1MEc LINE L1 -1769 4446 4152 * 4219 236 38 33 chr15 30965479 30966933 -70413588 - L1MEc LINE L1 -2458 3757 2297 472 250 23 0 chr15 30967073 30967201 -70413320 - L1MA10 LINE L1 -9 6325 6195 3465 281 79 40 chr15 30967236 30969359 -70411162 - L1MEc LINE L1 -4144 2252 46 213 39 0 0 chr15 30969380 30969406 -70411115 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1621 203 3 11 chr15 30969756 30970073 -70410448 + AluJo SINE Alu 1 315 0 21 36 0 0 chr15 30970141 30970169 -70410352 + AT_rich Low_complexity Low_complexity 1 28 0 1558 93 0 21 chr15 30970635 30970872 -70409649 + L1PA7 LINE L1 5920 6151 -3 5073 186 56 7 chr15 30971260 30972409 -70408112 + L1MD2 LINE L1 5142 6346 -13 341 379 28 0 chr15 30972853 30972998 -70407523 - LTR16A LTR ERVL -293 157 9 5293 72 62 8 chr15 30974331 30975091 -70405430 - L1PA13 LINE L1 -1 6162 5362 1294 173 27 96 chr15 30975091 30975392 -70405129 - AluJo SINE Alu -32 280 1 340 312 0 55 chr15 30975473 30975582 -70404939 + MIR SINE MIR 88 190 -72 1298 168 110 0 chr15 30975807 30976098 -70404423 + MER33 DNA MER1_type 1 323 -1 1034 171 0 0 chr15 30978381 30978545 -70401976 + AluSg/x SINE Alu 132 295 -15 1277 138 0 5 chr15 30978861 30979064 -70401457 - AluSx SINE Alu -7 305 104 672 125 0 0 chr15 30979153 30979249 -70401272 - AluSx SINE Alu -216 96 1 517 264 0 0 chr15 30979346 30979456 -70401065 - MIR SINE MIR -107 155 46 256 228 196 11 chr15 30980244 30980336 -70400185 + L2 LINE L2 3160 3268 -4 228 170 43 0 chr15 30982092 30982139 -70398382 + GA-rich Low_complexity Low_complexity 2 50 0 962 323 48 36 chr15 30982890 30983471 -70397050 - L2 LINE L2 -19 3294 2716 458 333 29 6 chr15 30983794 30983968 -70396553 + MIR SINE MIR 26 203 -59 223 297 0 16 chr15 30985364 30985428 -70395093 + GA-rich Low_complexity Low_complexity 4 66 0 285 308 130 16 chr15 30986573 30986758 -70393763 - L2 LINE L2 0 3313 3108 193 358 62 19 chr15 30987001 30987163 -70393358 + L2 LINE L2 2888 3056 -257 613 296 36 5 chr15 30987472 30987668 -70392853 - LTR16C LTR ERVL -52 439 238 1773 176 6 6 chr15 30988977 30989289 -70391232 + AluJo SINE Alu 1 312 0 986 246 40 12 chr15 30989809 30990061 -70390460 - L1ME1 LINE L1 -24 6142 5884 2029 139 3 3 chr15 30993977 30994322 -70386199 + AluSx SINE Alu 1 345 0 18192 168 18 5 chr15 30994423 30998856 -70381665 + L1PA13 LINE L1 1678 6162 -1 630 241 136 4 chr15 30998980 30999208 -70381313 + MER112 DNA MER1_type 1 258 -2 3739 233 37 11 chr15 30999719 30999994 -70380527 + L1P LINE L1 2168 2435 -3711 180 111 0 0 chr15 30999994 31000021 -70380500 + (TATG)n Simple_repeat Simple_repeat 2 28 0 3739 233 37 11 chr15 31000021 31000789 -70379732 + L1P LINE L1 2435 3241 -2905 4191 125 31 12 chr15 31000789 31001471 -70379050 + L1PA15 LINE L1 5465 6159 -6 3739 233 37 11 chr15 31001471 31001493 -70379028 + L1P LINE L1 3241 3261 -2885 307 200 0 0 chr15 31002341 31002391 -70378130 - L2 LINE L2 -8 3264 3215 281 233 68 0 chr15 31002533 31002606 -70377915 + MLT1J LTR MaLR 107 184 -327 555 245 13 22 chr15 31002680 31002873 -70377648 + MLT1J2 LTR MaLR 265 409 0 366 314 59 8 chr15 31002938 31003056 -70377465 + L2 LINE L2 3190 3313 0 320 339 15 8 chr15 31004155 31004285 -70376236 - MIR3 SINE MIR -69 139 9 207 0 0 0 chr15 31005208 31005231 -70375290 + (T)n Simple_repeat Simple_repeat 1 23 0 518 372 60 0 chr15 31005381 31005733 -70374788 - L2 LINE L2 -214 3099 2728 299 262 8 90 chr15 31005921 31005984 -70374537 - MER94 DNA DNA 0 134 84 2061 130 3 0 chr15 31005984 31006277 -70374244 - AluSc SINE Alu -15 294 1 299 262 8 90 chr15 31006277 31006335 -70374186 - MER94 DNA DNA -50 84 23 244 330 33 0 chr15 31007083 31007174 -70373347 + L2 LINE L2 2929 3022 -250 337 276 122 18 chr15 31008288 31008411 -70372110 + MIR SINE MIR 5 141 -67 583 237 25 97 chr15 31008428 31008706 -70371815 - MER102a DNA MER1_type 0 330 73 253 250 0 0 chr15 31008781 31008833 -70371688 + MIR3 SINE MIR 151 202 -6 2823 80 38 90 chr15 31010542 31011044 -70369477 + SVA Other Other 393 868 -518 1829 102 11 73 chr15 31011201 31011664 -70368857 + SVA Other Other 433 866 -520 31 96 0 0 chr15 31011669 31011763 -70368758 + GC_rich Low_complexity Low_complexity 1 94 0 6499 55 3 38 chr15 31011871 31012744 -70367777 + SVA Other Other 544 1386 0 478 300 82 18 chr15 31013487 31013707 -70366814 - MLT1L LTR MaLR -1 614 381 206 335 220 23 chr15 31014061 31014234 -70366287 + L3b LINE CR1 1372 1578 -5 648 317 53 16 chr15 31014872 31015115 -70365406 - LTR16A LTR ERVL -107 343 92 381 43 0 0 chr15 31015571 31015618 -70364903 + (TTC)n Simple_repeat Simple_repeat 1 47 0 746 263 0 0 chr15 31015624 31015776 -70364745 - FRAM SINE Alu -14 152 1 868 331 43 17 chr15 31015991 31016338 -70364183 - LTR16A LTR ERVL 0 450 95 253 246 72 94 chr15 31016657 31016795 -70363726 + MIR SINE MIR 59 193 -69 184 289 16 117 chr15 31017421 31017549 -70362972 - L2 LINE L2 -10 3262 3148 233 143 0 20 chr15 31017747 31017796 -70362725 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 214 255 0 0 chr15 31018939 31018986 -70361535 - L2 LINE L2 -9 3304 3258 655 254 135 0 chr15 31019390 31019583 -70360938 - MER20 DNA MER1_type 0 219 1 345 342 116 7 chr15 31019631 31019906 -70360615 + L2 LINE L2 2470 2774 -540 521 272 65 50 chr15 31020012 31020291 -70360230 + L1ME1 LINE L1 5878 6160 -6 2001 139 14 0 chr15 31020697 31020991 -70359530 - AluSq SINE Alu -15 298 1 559 252 26 13 chr15 31021271 31021422 -70359099 - L2 LINE L2 -2 3311 3159 332 288 108 36 chr15 31022076 31022215 -70358306 - MIR3 SINE MIR -27 181 33 504 330 43 29 chr15 31022331 31022680 -70357841 + L1MEd LINE L1 12 365 -5754 210 246 31 31 chr15 31023581 31023646 -70356875 - MIR SINE MIR -85 177 113 246 136 0 0 chr15 31025311 31025355 -70355166 + (CA)n Simple_repeat Simple_repeat 2 45 0 410 265 157 64 chr15 31025510 31025714 -70354807 + LTR16C LTR ERVL 70 292 -199 302 150 117 0 chr15 31025716 31025776 -70354745 + LTR16C LTR ERVL 405 471 -20 518 273 48 78 chr15 31025794 31026199 -70354322 + L1MEd LINE L1 789 1161 -4958 2174 131 81 2 chr15 31026199 31026596 -70353925 + MSTA LTR MaLR 1 428 0 518 273 48 78 chr15 31026596 31026629 -70353892 + L1MEd LINE L1 1161 1193 -4926 415 248 78 23 chr15 31026651 31026935 -70353586 + L1M2 LINE L1 1840 2075 -863 228 283 0 0 chr15 31027407 31027460 -70353061 + MIR SINE MIR 83 135 -73 204 239 209 0 chr15 31028441 31028508 -70352013 + L2 LINE L2 3232 3312 -1 245 244 12 12 chr15 31028941 31029023 -70351498 - L1M4 LINE L1 -3152 2994 2913 662 302 87 36 chr15 31029175 31029648 -70350873 - L1M4 LINE L1 -3346 2800 2304 973 279 100 54 chr15 31029654 31030174 -70350347 + MLT1H LTR MaLR 1 544 -5 1012 134 38 0 chr15 31030330 31030487 -70350034 + L1PA16 LINE L1 6002 6164 -2 21 0 0 0 chr15 31030499 31030520 -70350001 + AT_rich Low_complexity Low_complexity 1 21 0 3911 92 75 17 chr15 31031268 31031868 -70348653 - MER41B LTR ERV1 0 635 1 574 309 75 0 chr15 31031896 31032084 -70348437 + MIR SINE MIR 50 251 -11 340 274 30 32 chr15 31032549 31032675 -70347846 + MIR3 SINE MIR 56 183 -25 619 202 0 0 chr15 31033178 31033287 -70347234 - FLAM_C SINE Alu -34 109 1 1794 98 4 15 chr15 31042035 31042309 -70338212 - L1MA2 LINE L1 -8 6296 6026 775 148 74 34 chr15 31044305 31044454 -70336067 + FAM SINE Alu 12 166 -19 473 291 127 19 chr15 31044849 31045062 -70335459 + MIR SINE MIR 25 260 -2 297 109 0 0 chr15 31045269 31045315 -70335206 + (TG)n Simple_repeat Simple_repeat 1 46 0 194 301 215 11 chr15 31045925 31046018 -70334503 - MIR SINE MIR -63 145 34 * 557 268 112 34 chr15 31046000 31046205 -70334316 + MIR SINE MIR 40 260 -2 421 226 17 17 chr15 31046219 31046334 -70334187 + MIR SINE MIR 148 262 0 30 0 0 0 chr15 31046484 31046514 -70334007 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr15 31048702 31048731 -70331790 + AT_rich Low_complexity Low_complexity 1 29 0 2054 121 3 0 chr15 31050996 31051278 -70329243 - AluSx SINE Alu -27 285 3 2332 63 10 3 chr15 31051818 31052118 -70328403 + AluY SINE Alu 1 302 -9 188 262 36 60 chr15 31052439 31052523 -70327998 + MIR SINE MIR 181 262 0 267 31 0 0 chr15 31052572 31052604 -70327917 + (TATAG)n Simple_repeat Simple_repeat 2 33 0 2410 70 3 0 chr15 31052688 31052989 -70327532 - AluY SINE Alu -7 304 3 500 239 51 124 chr15 31057590 31057824 -70322697 + MIR SINE MIR 20 236 -26 1844 169 10 0 chr15 31059476 31059783 -70320738 - AluSx SINE Alu -2 310 1 254 242 45 0 chr15 31060212 31060278 -70320243 - MIR SINE MIR -63 145 77 229 174 0 0 chr15 31060549 31060595 -70319926 + LTR66 LTR ERVL 394 439 -171 301 207 0 0 chr15 31060595 31060653 -70319868 - L1MC4 LINE L1 -1339 6703 6646 180 337 174 10 chr15 31061320 31061418 -70319103 - MIR SINE MIR -56 206 93 226 337 238 10 chr15 31063395 31063588 -70316933 - L3 LINE CR1 -12 1565 1329 284 328 23 8 chr15 31063945 31064076 -70316445 - L2 LINE L2 -630 2684 2552 260 335 116 19 chr15 31064097 31064252 -70316269 + MIR3 SINE MIR 18 187 -21 315 328 116 20 chr15 31064664 31064862 -70315659 - MIR SINE MIR -20 242 26 397 195 58 0 chr15 31065173 31065260 -70315261 - MIR SINE MIR -1 261 170 1350 207 92 12 chr15 31065897 31066235 -70314286 + MLT1A1 LTR MaLR 1 365 0 2140 133 3 3 chr15 31066615 31066924 -70313597 + AluSx SINE Alu 2 310 -2 207 162 0 0 chr15 31066960 31066997 -70313524 + CT-rich Low_complexity Low_complexity 4 40 0 6718 70 5 1 chr15 31067140 31068842 -70311679 - L1PA8 LINE L1 -13 6159 4445 199 258 106 15 chr15 31069433 31069499 -70311022 + MIR SINE MIR 19 90 -118 273 311 54 34 chr15 31069509 31069657 -70310864 - MIR3 SINE MIR -48 160 10 275 288 54 63 chr15 31069661 31069772 -70310749 - L3b LINE CR1 -199 1384 1275 387 308 31 15 chr15 31072264 31072394 -70308127 - MLT1I LTR MaLR -34 375 244 464 203 43 51 chr15 31072414 31072552 -70307969 - MLT1I LTR MaLR -269 140 4 248 288 79 65 chr15 31072769 31072908 -70307613 - MIR SINE MIR -70 192 52 196 263 188 0 chr15 31075491 31075571 -70304950 - MIR3 SINE MIR -7 201 107 502 277 15 31 chr15 31076530 31076660 -70303861 - L2 LINE L2 0 3313 3186 1534 187 29 66 chr15 31077281 31077519 -70303002 + MLT1A1 LTR MaLR 1 221 -144 2470 72 3 0 chr15 31077519 31077825 -70302696 - AluY SINE Alu -4 307 1 1534 187 29 66 chr15 31077825 31077965 -70302556 + MLT1A1 LTR MaLR 221 365 0 2417 142 10 5 chr15 31078656 31079044 -70301477 + MLT1B LTR MaLR 1 390 0 525 115 0 0 chr15 31079184 31079262 -70301259 - MER116 DNA Mariner -2 78 1 489 279 143 7 chr15 31079560 31079714 -70300807 + MER5A DNA MER1_type 13 187 -2 323 297 148 70 chr15 31079747 31079976 -70300545 - L1MC/D LINE L1 -2236 5572 5326 294 29 0 0 chr15 31080401 31080436 -70300085 + (CA)n Simple_repeat Simple_repeat 1 35 0 3279 174 2 19 chr15 31082921 31083536 -70296985 - L1MB7 LINE L1 -20 6164 5561 21 0 0 0 chr15 31083893 31083914 -70296607 + AT_rich Low_complexity Low_complexity 1 21 0 2426 67 0 3 chr15 31085069 31085367 -70295154 + AluY SINE Alu 1 297 -14 700 178 152 65 chr15 31086958 31087071 -70293450 - Tigger6a DNA MER2_type -514 1083 981 2299 39 7 4 chr15 31087071 31087380 -70293141 - AluY SINE Alu 0 310 1 700 178 152 65 chr15 31087380 31087495 -70293026 - Tigger6a DNA MER2_type -616 981 834 1336 161 35 12 chr15 31087496 31087864 -70292657 + Tigger2a DNA MER2_type 1 434 0 1702 160 52 6 chr15 31087876 31088201 -70292320 - Tigger6a DNA MER2_type -252 831 492 1417 169 23 40 chr15 31088206 31088508 -70292013 + MLT1A1 LTR MaLR 15 311 -54 2149 225 36 0 chr15 31088906 31089377 -70291144 - Tigger6a DNA MER2_type -593 490 3 2650 174 44 23 chr15 31089461 31090034 -70290487 - L1MB5 LINE L1 -9 6165 5581 2241 250 77 51 chr15 31090034 31091083 -70289438 - L1ME LINE L1 -479 5691 4670 186 43 0 0 chr15 31091083 31091106 -70289415 + (CCA)n Simple_repeat Simple_repeat 1 23 0 2241 250 77 51 chr15 31091106 31091176 -70289345 - L1ME LINE L1 -1500 4670 4603 1412 209 47 14 chr15 31091176 31091472 -70289049 + AluJo SINE Alu 1 306 -6 2241 250 77 51 chr15 31091472 31091937 -70288584 - L1ME LINE L1 -1567 4603 4058 2466 67 0 13 chr15 31092031 31092346 -70288175 - AluY SINE Alu 0 311 1 1959 149 39 33 chr15 31092389 31092751 -70287770 - THE1B LTR MaLR 0 364 1 316 340 90 38 chr15 31093285 31093573 -70286948 - L2 LINE L2 -459 2855 2553 2690 96 13 0 chr15 31095362 31095748 -70284773 - L1PA13 LINE L1 -2 6161 5771 509 75 0 0 chr15 31095750 31095817 -70284704 - L1PA15 LINE L1 -328 5837 5771 410 122 54 0 chr15 31095819 31095893 -70284628 - L1PA13 LINE L1 -326 5837 5760 224 295 152 0 chr15 31096448 31096553 -70283968 + MIR SINE MIR 56 176 -86 727 330 130 17 chr15 31099686 31100040 -70280481 + L2 LINE L2 2445 2838 -476 418 304 110 42 chr15 31100048 31100285 -70280236 - L2 LINE L2 -20 3252 3000 584 313 97 8 chr15 31100324 31100583 -70279938 - L2 LINE L2 -561 2753 2472 225 236 0 18 chr15 31100703 31100758 -70279763 + L2 LINE L2 2920 2973 -340 1541 158 113 12 chr15 31100761 31101289 -70279232 - LTR9B LTR ERV1 0 644 9 317 316 227 4 chr15 31101313 31101569 -70278952 + L2 LINE L2 3001 3313 0 562 256 20 50 chr15 31101739 31101936 -70278585 + MIR SINE MIR 61 251 -11 581 219 0 7 chr15 31105079 31105230 -70275291 + CT-rich Low_complexity Low_complexity 3 152 0 261 180 0 0 chr15 31106057 31106107 -70274414 + T-rich Low_complexity Low_complexity 1 50 0 196 280 30 76 chr15 31107384 31107516 -70273005 + L2 LINE L2 2938 3063 -209 429 345 41 29 chr15 31109464 31109710 -70270811 - L3b LINE CR1 -173 1410 1162 230 121 0 0 chr15 31111218 31111251 -70269270 - MADE1 DNA Mariner -47 33 1 2245 118 0 0 chr15 31112812 31113116 -70267405 - AluSx SINE Alu -8 304 1 196 208 0 42 chr15 31113780 31113828 -70266693 - L2 LINE L2 -1 3312 3267 274 279 13 0 chr15 31114742 31114821 -70265700 - MIR SINE MIR -15 247 168 1454 250 26 62 chr15 31115175 31115740 -70264781 + Charlie1 DNA MER1_type 1 545 -2216 1297 151 121 4 chr15 31115757 31116029 -70264492 + L1MA9 LINE L1 6007 6310 -2 3357 208 135 52 chr15 31116042 31117142 -70263379 + Charlie1 DNA MER1_type 555 1743 -1018 2129 192 62 16 chr15 31117139 31117638 -70262883 + Charlie1 DNA MER1_type 1954 2475 -286 * 690 304 66 12 chr15 31120071 31120314 -70260207 - MIR SINE MIR 0 262 7 22 35 0 0 chr15 31120920 31120949 -70259572 + AT_rich Low_complexity Low_complexity 1 29 0 315 240 94 82 chr15 31120968 31121139 -70259382 - MIR SINE MIR -1 261 89 2232 109 7 0 chr15 31121290 31121584 -70258937 - AluSc SINE Alu -12 297 2 392 225 101 3 chr15 31122709 31122880 -70257641 + MIR SINE MIR 4 248 -14 658 329 105 10 chr15 31123232 31123815 -70256706 - L2 LINE L2 0 3313 2648 267 278 61 35 chr15 31123909 31124024 -70256497 - MLT1K LTR MaLR -93 495 378 390 222 37 12 chr15 31124376 31124457 -70256064 - L2 LINE L2 -39 3274 3192 1050 263 70 10 chr15 31125570 31125847 -70254674 + LTR41 LTR ERVL 1 296 -477 340 210 222 0 chr15 31125847 31125928 -70254593 + MER45 DNA AcHobo 1 99 -79 227 31 31 0 chr15 31126361 31126393 -70254128 + (TAG)n Simple_repeat Simple_repeat 1 33 0 21 71 0 0 chr15 31127176 31127218 -70253303 + AT_rich Low_complexity Low_complexity 1 42 0 399 327 15 40 chr15 31127404 31127603 -70252918 - L1MEd LINE L1 -4906 1213 1020 235 148 16 16 chr15 31128240 31128301 -70252220 + CT-rich Low_complexity Low_complexity 2 62 0 306 125 0 0 chr15 31128781 31128829 -70251692 + (TG)n Simple_repeat Simple_repeat 1 48 0 193 370 0 0 chr15 31128917 31128990 -70251531 - L2 LINE L2 0 3272 3200 26 64 0 0 chr15 31129728 31129775 -70250746 + AT_rich Low_complexity Low_complexity 1 47 0 183 80 0 0 chr15 31130387 31130412 -70250109 + (T)n Simple_repeat Simple_repeat 1 25 0 206 277 0 0 chr15 31130526 31130573 -70249948 + (CA)n Simple_repeat Simple_repeat 2 48 0 427 160 43 11 chr15 31131990 31132084 -70248437 - MER103 DNA DNA -10 156 60 634 328 4 45 chr15 31132085 31132353 -70248168 + MIR SINE MIR 1 257 -5 762 11 0 0 chr15 31133367 31133454 -70247067 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 1154 115 0 0 chr15 31133457 31133631 -70246890 + L1PA13 LINE L1 5875 6048 -115 186 267 160 0 chr15 31134022 31134097 -70246424 - L2 LINE L2 -214 3058 2972 1688 290 172 13 chr15 31134122 31135119 -70245402 + L2 LINE L2 2133 3267 -5 203 259 0 19 chr15 31135408 31135462 -70245059 + CT-rich Low_complexity Low_complexity 3 55 0 268 305 9 9 chr15 31135564 31135596 -70244925 + (TA)n Simple_repeat Simple_repeat 2 33 -73 1923 146 43 30 chr15 31135596 31135966 -70244555 + THE1C LTR MaLR 1 375 0 268 305 9 9 chr15 31135966 31136038 -70244483 + (TA)n Simple_repeat Simple_repeat 32 106 0 198 167 0 0 chr15 31136847 31136877 -70243644 - MER5A DNA MER1_type -159 30 1 2264 194 71 28 chr15 31139029 31139595 -70240926 - L1MD3 LINE L1 0 7995 7406 384 286 0 0 chr15 31139598 31139682 -70240839 - MLT1F1 LTR MaLR -449 118 35 723 222 56 0 chr15 31139682 31139880 -70240641 - L1MD3 LINE L1 -879 7116 6908 4830 114 12 5 chr15 31139880 31140641 -70239880 - L1MA4A LINE L1 -4 6299 5534 14507 199 27 12 chr15 31140641 31144146 -70236375 - L1 LINE L1 -870 5978 2496 1011 119 62 0 chr15 31144155 31144348 -70236173 - L1MA3 LINE L1 0 6305 6101 1879 116 14 7 chr15 31144348 31144642 -70235879 + L1MA3 LINE L1 5780 6075 -230 * 8275 168 16 12 chr15 31144638 31146076 -70234445 - L1 LINE L1 -4424 2425 983 2217 224 33 88 chr15 31146079 31146863 -70233658 - L1MD3 LINE L1 -1072 6923 6183 2609 243 95 56 chr15 31146945 31147049 -70233472 - L1MCc LINE L1 -3113 3828 3730 2091 128 3 0 chr15 31147049 31147337 -70233184 - AluSx SINE Alu -23 289 1 2609 243 95 56 chr15 31147337 31148302 -70232219 - L1MCc LINE L1 -3211 3730 2804 2213 46 21 25 chr15 31148302 31148616 -70231905 + AluY SINE Alu 1 313 0 2609 243 95 56 chr15 31148616 31148655 -70231866 - L1MCc LINE L1 -4137 2804 2768 2065 116 55 25 chr15 31148655 31149017 -70231504 + THE1C LTR MaLR 1 373 -2 2609 243 95 56 chr15 31149017 31149264 -70231257 - L1MCc LINE L1 -4173 2768 2532 2274 61 3 7 chr15 31149264 31149559 -70230962 + AluY SINE Alu 1 294 -17 2609 243 95 56 chr15 31149559 31150968 -70229553 - L1MCc LINE L1 -4409 2532 854 357 290 81 76 chr15 31151131 31151503 -70229018 - L1MCc LINE L1 -5624 798 429 1836 112 8 0 chr15 31151503 31151752 -70228769 - AluSx SINE Alu -5 307 57 1645 129 8 8 chr15 31151752 31151991 -70228530 - AluSc SINE Alu -68 241 1 357 290 81 76 chr15 31151991 31152078 -70228443 - L1MCc LINE L1 -5992 430 12 2036 110 28 8 chr15 31153403 31153759 -70226762 + L1MA8 LINE L1 5927 6289 -2 843 313 61 10 chr15 31153959 31154269 -70226252 + MLT1J2 LTR MaLR 3 328 -122 2059 122 0 17 chr15 31154612 31155080 -70225441 - AluSx SINE Alu 0 463 1 345 304 66 41 chr15 31155600 31155642 -70224879 - L1MEc LINE L1 -3783 2432 2393 1240 202 73 48 chr15 31155642 31155998 -70224523 - MLT1A1 LTR MaLR 0 365 1 345 304 66 41 chr15 31155998 31156245 -70224276 - L1MEc LINE L1 -3822 2393 2172 442 353 85 28 chr15 31157063 31157930 -70222591 + L1ME4a LINE L1 4372 5301 -845 1021 270 88 19 chr15 31157938 31158468 -70222053 + L1ME4a LINE L1 5332 5912 -209 1979 116 64 59 chr15 31158590 31158978 -70221543 - MLT1B LTR MaLR 0 390 1 2107 88 49 26 chr15 31159068 31159374 -70221147 - AluSp SINE Alu 0 313 1 23 0 0 0 chr15 31159592 31159615 -70220906 + AT_rich Low_complexity Low_complexity 1 23 0 243 157 0 0 chr15 31161401 31161452 -70219069 + GA-rich Low_complexity Low_complexity 2 52 0 371 311 108 0 chr15 31162052 31162219 -70218302 - MIR SINE MIR -39 223 39 21 0 0 0 chr15 31163492 31163513 -70217008 + AT_rich Low_complexity Low_complexity 1 21 0 1760 191 43 3 chr15 31165002 31165353 -70215168 - MLT1A1 LTR MaLR 0 365 1 642 259 138 12 chr15 31166986 31167233 -70213288 - LTR16A1 LTR ERVL -12 445 168 698 188 7 0 chr15 31167424 31167568 -70212953 + L1P LINE L1 4319 4463 -1683 29 70 0 0 chr15 31167568 31167625 -70212896 + AT_rich Low_complexity Low_complexity 1 57 0 959 142 28 28 chr15 31169927 31170103 -70210418 + L1PB4 LINE L1 5979 6154 -2 208 151 19 38 chr15 31170422 31170475 -70210046 + (TA)n Simple_repeat Simple_repeat 1 52 0 199 328 0 0 chr15 31171290 31171351 -70209170 - MIR SINE MIR -139 123 63 33 90 0 0 chr15 31171600 31171689 -70208832 + AT_rich Low_complexity Low_complexity 1 89 0 180 0 0 0 chr15 31172017 31172037 -70208484 + (TG)n Simple_repeat Simple_repeat 1 20 0 1131 195 7 121 chr15 31172045 31172186 -70208335 - AluSp SINE Alu -41 272 183 507 33 0 0 chr15 31172186 31172247 -70208274 + (TG)n Simple_repeat Simple_repeat 2 62 0 1131 195 7 121 chr15 31172247 31172412 -70208109 - AluSp SINE Alu -130 183 1 2835 255 29 43 chr15 31172413 31173264 -70207257 + L2 LINE L2 1993 2831 -483 711 284 30 51 chr15 31173351 31173647 -70206874 + L2 LINE L2 3023 3312 -1 23 33 0 0 chr15 31174913 31174943 -70205578 + AT_rich Low_complexity Low_complexity 1 30 0 264 258 22 11 chr15 31177197 31177286 -70203235 + MLT1F1 LTR MaLR 36 125 -442 2144 199 72 34 chr15 31177472 31178024 -70202497 + L1MC3 LINE L1 7205 7777 -8 472 343 24 94 chr15 31178443 31178816 -70201705 + L2 LINE L2 2918 3264 -8 2774 166 21 52 chr15 31179089 31179310 -70201211 + L1PA16 LINE L1 5570 5796 -370 414 0 0 0 chr15 31179310 31179356 -70201165 + (TG)n Simple_repeat Simple_repeat 2 47 0 2774 166 21 52 chr15 31179356 31179747 -70200774 + L1PA16 LINE L1 5796 6163 -3 194 319 53 71 chr15 31179954 31180067 -70200454 + L3b LINE CR1 1468 1578 -5 2226 158 37 35 chr15 31182629 31183060 -70197461 - MSTB1 LTR MaLR 0 432 1 311 348 58 37 chr15 31183331 31183659 -70196862 + L2 LINE L2 2159 2493 -821 267 288 51 42 chr15 31183803 31183921 -70196600 + L3 LINE CR1 632 750 -827 330 329 147 53 chr15 31184472 31184846 -70195675 + L3 LINE CR1 772 1180 -397 2340 67 10 16 chr15 31184846 31185159 -70195362 + AluY SINE Alu 1 311 0 356 319 9 80 chr15 31185261 31185474 -70195047 - L3 LINE CR1 -410 1167 970 502 332 62 5 chr15 31185491 31185702 -70194819 + L3 LINE CR1 1280 1502 -75 225 200 17 50 chr15 31185819 31185879 -70194642 + Charlie8 DNA MER1_type 2360 2417 0 299 316 188 0 chr15 31186628 31186745 -70193776 + MIR3 SINE MIR 21 159 -49 1061 259 97 43 chr15 31187933 31188326 -70192195 + MLT1J2 LTR MaLR 32 445 -5 706 352 60 45 chr15 31188617 31189395 -70191126 - L2 LINE L2 0 3313 2527 507 247 39 39 chr15 31189395 31189549 -70190972 - L2 LINE L2 -985 2329 2176 354 237 17 42 chr15 31190023 31190141 -70190380 - L1ME3A LINE L1 0 6239 6125 333 269 46 19 chr15 31190214 31190322 -70190199 - L2 LINE L2 -2 3311 3201 212 211 58 0 chr15 31190486 31190538 -70189983 + L2 LINE L2 3218 3272 0 286 303 129 8 chr15 31192510 31192642 -70187879 + MIR SINE MIR 1 148 -114 29 28 0 0 chr15 31198122 31198158 -70182363 + AT_rich Low_complexity Low_complexity 1 36 0 261 291 0 0 chr15 31199756 31199811 -70180710 + L2 LINE L2 3247 3301 -12 356 122 49 12 chr15 31200840 31200922 -70179599 + L1MB7 LINE L1 6100 6184 0 249 351 0 11 chr15 31201060 31201154 -70179367 - MIR SINE MIR -81 127 35 241 130 0 43 chr15 31201701 31201747 -70178774 + MER63 DNA MER1_type 38 707 -129 466 251 142 54 chr15 31201862 31202193 -70178328 + L1ME4a LINE L1 4487 4846 -1300 1118 287 37 41 chr15 31202488 31202924 -70177597 - LTR16C LTR ERVL -23 468 35 583 208 12 24 chr15 31203549 31203717 -70176804 - MER96B DNA MER1_type? -237 180 15 22 0 0 0 chr15 31203886 31203908 -70176613 + AT_rich Low_complexity Low_complexity 1 22 0 439 258 85 50 chr15 31204068 31204351 -70176170 + L1ME4a LINE L1 5550 5842 -279 283 256 0 0 chr15 31208527 31208605 -70171916 + T-rich Low_complexity Low_complexity 1 78 0 393 306 50 33 chr15 31209049 31209170 -70171351 - L2 LINE L2 0 3272 3150 1541 170 10 35 chr15 31209203 31209491 -70171030 - AluJo SINE Alu -31 281 1 231 217 0 0 chr15 31210602 31210662 -70169859 + (TA)n Simple_repeat Simple_repeat 1 60 0 201 213 0 21 chr15 31211149 31211196 -70169325 + (TA)n Simple_repeat Simple_repeat 1 46 0 24 32 0 0 chr15 31213165 31213196 -70167325 + AT_rich Low_complexity Low_complexity 1 31 0 256 200 17 17 chr15 31213404 31213464 -70167057 - L1ME3A LINE L1 -224 6015 5956 6028 160 53 15 chr15 31213547 31214968 -70165553 - L1MC1 LINE L1 -6 6327 4847 304 250 39 39 chr15 31214971 31215207 -70165314 - L1ME3A LINE L1 -730 5509 5228 1268 269 121 26 chr15 31215291 31216660 -70163861 - L1MEc LINE L1 -2814 3401 1941 531 266 126 23 chr15 31217008 31217271 -70163250 - LTR16A1 LTR ERVL 0 457 168 408 167 191 24 chr15 31217442 31217568 -70162953 + Charlie4 DNA MER1_type 20 166 -1795 210 71 0 0 chr15 31218302 31218330 -70162191 + (T)n Simple_repeat Simple_repeat 1 28 0 26 0 0 0 chr15 31218906 31218932 -70161589 + AT_rich Low_complexity Low_complexity 1 26 0 182 312 110 18 chr15 31219794 31219903 -70160618 + MIR SINE MIR 142 260 -2 526 309 62 0 chr15 31220382 31220544 -70159977 - MER63A DNA MER1_type -4 206 35 371 277 20 0 chr15 31221241 31221342 -70159179 - MIR SINE MIR -3 259 157 2208 87 3 10 chr15 31221342 31221651 -70158870 + MER41A LTR ERV1 248 554 0 1392 94 25 0 chr15 31221651 31221853 -70158668 - HSMAR2 DNA Mariner -1095 207 1 308 262 96 3 chr15 31222739 31222868 -70157653 - MIR SINE MIR -64 144 21 273 57 0 0 chr15 31223933 31223968 -70156553 + (T)n Simple_repeat Simple_repeat 1 35 0 2241 78 4 0 chr15 31226125 31226429 -70154092 - AluY SINE Alu 0 305 1 560 238 131 19 chr15 31228742 31228902 -70151619 + MER45A DNA AcHobo 1 178 0 2045 125 3 7 chr15 31229124 31229428 -70151093 + AluSx SINE Alu 1 303 -9 909 298 66 46 chr15 31230829 31231380 -70149141 + L2 LINE L2 2503 3054 -259 6935 77 7 1 chr15 31231411 31232788 -70147733 - L1PA7 LINE L1 -26 6128 4744 * 7999 78 11 3 chr15 31232779 31233865 -70146656 + L1PA7 LINE L1 3641 4735 -1411 655 264 239 27 chr15 31233915 31234354 -70146167 + MLT1H LTR MaLR 2 533 -16 208 250 68 45 chr15 31234974 31235062 -70145459 - L2 LINE L2 0 3313 3224 188 312 101 28 chr15 31236668 31236777 -70143744 + L2 LINE L2 3146 3262 -10 1960 111 116 14 chr15 31236944 31237297 -70143224 - L1MA4A LINE L1 -6 6297 5909 387 262 16 71 chr15 31238436 31238562 -70141959 - L2 LINE L2 -5 3308 3190 340 164 82 91 chr15 31238630 31238740 -70141781 - MER53 DNA DNA 0 189 81 504 284 54 86 chr15 31239134 31239356 -70141165 + MIR SINE MIR 8 222 -40 2062 137 0 3 chr15 31240094 31240394 -70140127 + AluSx SINE Alu 1 299 -13 198 0 0 0 chr15 31241147 31241169 -70139352 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 636 14 0 0 chr15 31241173 31241246 -70139275 - L1PA5 LINE L1 -9 6145 6073 450 0 0 0 chr15 31241542 31241592 -70138929 + (TG)n Simple_repeat Simple_repeat 2 51 0 238 338 0 12 chr15 31241842 31241922 -70138599 - MIR SINE MIR -132 130 52 23 0 0 0 chr15 31242797 31242820 -70137701 + AT_rich Low_complexity Low_complexity 1 23 0 210 314 99 33 chr15 31243289 31243410 -70137111 - L2 LINE L2 -5 3267 3139 2203 102 0 3 chr15 31243726 31244041 -70136480 + AluSq SINE Alu 1 314 0 190 0 0 0 chr15 31244020 31244068 -70136453 + (CAA)n Simple_repeat Simple_repeat 1 48 0 330 180 0 0 chr15 31245023 31245084 -70135437 + L1ME LINE L1 5626 5686 -480 1054 204 82 4 chr15 31245093 31245373 -70135148 - L1ME LINE L1 -581 5585 5284 832 228 129 0 chr15 31245370 31245572 -70134949 - L1MC/D LINE L1 -2042 6161 5934 * 2168 250 82 6 chr15 31245566 31246345 -70134176 - L1MC/D LINE L1 -1534 5030 4193 14289 140 20 22 chr15 31246377 31247332 -70133189 - Tigger1 DNA MER2_type -13 2405 1449 782 181 0 8 chr15 31247332 31247465 -70133056 - FLAM_C SINE Alu -1 132 1 14289 140 20 22 chr15 31247465 31248919 -70131602 - Tigger1 DNA MER2_type -969 1449 1 3894 222 79 35 chr15 31248962 31250660 -70129861 - L1MEc LINE L1 -2422 4142 2411 1349 298 63 20 chr15 31250720 31251250 -70129271 + L2 LINE L2 2765 3312 -1 7160 179 72 21 chr15 31253065 31253171 -70127350 - L1MC3 LINE L1 0 7785 7686 1798 178 0 3 chr15 31253171 31253457 -70127064 + AluJb SINE Alu 1 285 -27 7160 179 72 21 chr15 31253457 31254203 -70126318 - L1MC3 LINE L1 -99 7686 6979 351 0 0 0 chr15 31254203 31254242 -70126279 + (TG)n Simple_repeat Simple_repeat 1 39 0 216 0 0 0 chr15 31254241 31254265 -70126256 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 7160 179 72 21 chr15 31254242 31255001 -70125520 - L1MC3 LINE L1 -806 6979 6115 1173 242 51 23 chr15 31254996 31255347 -70125174 - L1MEc LINE L1 -5116 929 569 * 2358 126 22 3 chr15 31255431 31255787 -70124734 + THE1B LTR MaLR 1 363 -1 293 177 32 0 chr15 31255949 31256011 -70124510 - L1MEc LINE L1 -5086 959 896 1437 264 16 46 chr15 31256017 31256513 -70124008 - L1MEc LINE L1 -5562 483 3 235 301 0 0 chr15 31256549 31256622 -70123899 - MIR SINE MIR -66 196 124 2417 63 3 0 chr15 31256855 31257156 -70123365 + AluY SINE Alu 1 302 -9 356 277 136 35 chr15 31258658 31258863 -70121658 + MIR SINE MIR 32 256 -6 2367 82 3 0 chr15 31259667 31259971 -70120550 - AluY SINE Alu -6 305 1 1171 208 17 97 chr15 31260457 31260818 -70119703 + L1ME1 LINE L1 5501 5832 -334 2228 96 10 13 chr15 31260893 31261205 -70119316 - AluSq SINE Alu -2 311 1 2060 112 39 3 chr15 31262416 31262721 -70117800 - MER7A DNA MER2_type 0 346 33 352 299 84 43 chr15 31262793 31263123 -70117398 - L1ME3A LINE L1 -233 5937 5587 916 265 110 60 chr15 31263123 31263606 -70116915 + MLT1J LTR MaLR 5 511 0 352 299 84 43 chr15 31263606 31263669 -70116852 - L1ME3A LINE L1 -583 5587 5528 197 301 27 0 chr15 31263769 31263842 -70116679 - MIR SINE MIR -62 146 72 340 315 107 0 chr15 31265370 31265519 -70115002 + MIR3 SINE MIR 35 199 -9 244 245 0 0 chr15 31265621 31265674 -70114847 + MLT1I LTR MaLR 72 124 -285 529 186 34 8 chr15 31265849 31265967 -70114554 + L1PA8A LINE L1 6011 6131 0 287 323 0 0 chr15 31266531 31266596 -70113925 - L2 LINE L2 0 3272 3208 365 331 37 7 chr15 31267134 31267270 -70113251 - MIR SINE MIR -121 141 2 2498 191 15 21 chr15 31267445 31267917 -70112604 + MER70A LTR ERVL 4 472 0 21 36 0 0 chr15 31268001 31268029 -70112492 + AT_rich Low_complexity Low_complexity 1 28 0 213 196 0 0 chr15 31268147 31268198 -70112323 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 271 309 201 7 chr15 31270145 31270294 -70110227 - MIR SINE MIR -50 212 35 409 346 67 8 chr15 31270547 31270801 -70109720 + L2 LINE L2 2811 3079 -193 181 365 81 14 chr15 31270839 31270913 -70109608 + L2 LINE L2 3157 3235 -37 2791 146 38 23 chr15 31271002 31271523 -70108998 + L1MB2 LINE L1 5624 6152 -19 1754 159 107 6 chr15 31271524 31271889 -70108632 + L1MA4 LINE L1 5893 6294 -6 1738 53 0 0 chr15 31272303 31272510 -70108011 + AluY SINE Alu 100 306 -5 471 374 20 5 chr15 31272569 31272772 -70107749 - MIR SINE MIR -54 208 3 225 384 66 5 chr15 31272845 31273043 -70107478 + L3b LINE CR1 1243 1452 -131 21 0 0 0 chr15 31273217 31273238 -70107283 + AT_rich Low_complexity Low_complexity 1 21 0 209 179 0 0 chr15 31274797 31274836 -70105685 + (CATA)n Simple_repeat Simple_repeat 1 39 0 432 274 116 7 chr15 31276009 31276155 -70104366 - MIR SINE MIR -53 209 48 509 253 205 9 chr15 31277975 31278204 -70102317 - LTR33A LTR ERVL -16 507 234 880 301 118 22 chr15 31278661 31279163 -70101358 - MLT1L LTR MaLR 0 615 66 1410 215 0 4 chr15 31279316 31279590 -70100931 + AluJo SINE Alu 1 273 -39 312 48 0 0 chr15 31279603 31279645 -70100876 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 252 274 14 14 chr15 31279645 31279718 -70100803 - MIR SINE MIR -172 90 18 189 274 20 0 chr15 31279813 31279864 -70100657 + L2 LINE L2 3220 3271 -1 230 348 113 17 chr15 31280980 31281095 -70099426 - MIR3 SINE MIR -38 170 45 599 301 99 41 chr15 31281272 31281841 -70098680 + MLT1F LTR MaLR 1 595 0 24 32 0 0 chr15 31282627 31282658 -70097863 + AT_rich Low_complexity Low_complexity 1 31 0 237 108 0 0 chr15 31285216 31285253 -70095268 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 228 409 18 18 chr15 31285253 31285417 -70095104 - L2 LINE L2 -7 3265 3102 1532 237 22 14 chr15 31285464 31285835 -70094686 - MLT1A2 LTR MaLR 0 374 1 2698 276 89 71 chr15 31286280 31287162 -70093359 - L2 LINE L2 -36 3277 2368 1598 95 25 8 chr15 31287162 31287404 -70093117 + L1PB2 LINE L1 5906 6151 0 2698 276 89 71 chr15 31287404 31288195 -70092326 - L2 LINE L2 -945 2368 1593 296 239 30 22 chr15 31288321 31288455 -70092066 + (TA)n Simple_repeat Simple_repeat 2 136 0 22 0 0 0 chr15 31289867 31289889 -70090632 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr15 31290014 31290040 -70090481 + AT_rich Low_complexity Low_complexity 1 26 0 233 246 18 0 chr15 31290146 31290203 -70090318 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 323 345 67 67 chr15 31290801 31291039 -70089482 - MIR SINE MIR -5 257 20 1236 238 47 74 chr15 31291077 31291548 -70088973 - L1MD3 LINE L1 -24 7971 7514 345 100 0 0 chr15 31291774 31291824 -70088697 + (TG)n Simple_repeat Simple_repeat 1 50 0 961 196 30 15 chr15 31291832 31292031 -70088490 + MER63A DNA MER1_type 9 210 0 2486 47 0 3 chr15 31292326 31292623 -70087898 + AluY SINE Alu 1 296 -15 1703 218 126 18 chr15 31293193 31293647 -70086874 + MLT1D LTR MaLR 2 504 -1 772 196 0 0 chr15 31293985 31294118 -70086403 + AluJ SINE Alu 1 133 -169 944 200 0 6 chr15 31294176 31294341 -70086180 + AluJ SINE Alu 121 284 -28 194 274 217 28 chr15 31294784 31294890 -70085631 + MIR SINE MIR 17 142 -66 22 0 0 0 chr15 31294923 31294945 -70085576 + AT_rich Low_complexity Low_complexity 1 22 0 391 230 36 97 chr15 31296554 31296719 -70083802 + MIR SINE MIR 52 206 -56 319 357 82 31 chr15 31296743 31296939 -70083582 + MIR SINE MIR 57 262 0 252 0 0 0 chr15 31297630 31297658 -70082863 + (CA)n Simple_repeat Simple_repeat 2 29 0 2102 108 0 4 chr15 31299407 31299685 -70080836 + AluSq SINE Alu 1 277 -36 325 289 39 16 chr15 31299970 31300098 -70080423 + MIR3 SINE MIR 78 208 0 261 385 106 15 chr15 31300482 31300812 -70079709 - L2 LINE L2 -26 3287 2928 502 258 0 8 chr15 31300910 31301042 -70079479 + MER94 DNA DNA 1 131 -3 650 352 112 31 chr15 31301074 31301682 -70078839 - L2 LINE L2 -577 2737 2081 357 248 23 15 chr15 31301774 31301907 -70078614 + LTR16C LTR ERVL 340 473 -18 266 305 153 28 chr15 31301908 31302085 -70078436 - L2 LINE L2 -1238 2076 1878 2880 48 6 0 chr15 31302087 31302443 -70078078 - L1PA7 LINE L1 -267 5887 5530 1467 85 0 5 chr15 31302430 31302631 -70077890 + L1PA7 LINE L1 5880 6079 -75 * 1859 83 4 0 chr15 31302633 31302873 -70077648 + AluY SINE Alu 58 298 -13 183 204 0 0 chr15 31302874 31302918 -70077603 - L2 LINE L2 -1622 1692 1649 643 369 95 7 chr15 31302920 31303459 -70077062 - L2 LINE L2 -1915 1399 814 333 343 86 69 chr15 31303855 31304205 -70076316 + L2 LINE L2 2916 3271 -1 301 343 127 25 chr15 31306169 31306414 -70074107 + L2 LINE L2 530 799 -2515 1869 146 30 3 chr15 31307376 31307671 -70072850 - AluSx SINE Alu -9 303 1 330 319 143 50 chr15 31307701 31308266 -70072255 + L2 LINE L2 1606 2223 -1091 376 259 28 9 chr15 31308436 31308544 -70071977 - MIR SINE MIR -149 113 4 * 432 334 100 46 chr15 31308544 31308936 -70071585 + L2 LINE L2 2338 2776 -538 455 285 32 16 chr15 31308936 31309122 -70071399 + MER5A DNA MER1_type 1 189 0 432 334 100 46 chr15 31309122 31309335 -70071186 + L2 LINE L2 2776 2976 -338 294 350 35 7 chr15 31309839 31309982 -70070539 - MIR SINE MIR -75 187 41 423 0 0 0 chr15 31310599 31310646 -70069875 + (TG)n Simple_repeat Simple_repeat 2 48 0 189 0 0 0 chr15 31311776 31311797 -70068724 + (A)n Simple_repeat Simple_repeat 1 21 0 310 314 107 13 chr15 31313381 31313540 -70066981 - MIR SINE MIR -87 175 2 780 296 76 58 chr15 31313838 31314271 -70066250 - MLT1L LTR MaLR -7 608 168 682 204 109 17 chr15 31314461 31314657 -70065864 - LTR41 LTR ERVL -551 244 2 228 316 25 13 chr15 31315122 31315201 -70065320 - L2 LINE L2 0 3272 3193 236 305 0 12 chr15 31316086 31316168 -70064353 + GA-rich Low_complexity Low_complexity 1 81 0 27 0 0 0 chr15 31316904 31316931 -70063590 + AT_rich Low_complexity Low_complexity 1 27 0 432 0 0 0 chr15 31316987 31317035 -70063486 + (T)n Simple_repeat Simple_repeat 1 48 0 357 267 62 21 chr15 31317071 31317311 -70063210 + L1M4 LINE L1 2841 3090 -3056 1611 278 100 42 chr15 31317436 31317926 -70062595 + L1M4 LINE L1 3514 3974 -2172 5450 131 17 5 chr15 31317926 31319277 -70061244 + L1PA13 LINE L1 4786 6150 -13 1611 278 100 42 chr15 31319277 31320329 -70060192 + L1M4 LINE L1 3974 5132 -1014 21 57 0 0 chr15 31320339 31320374 -70060147 + AT_rich Low_complexity Low_complexity 1 35 0 443 176 29 0 chr15 31320500 31320602 -70059919 + L1MC3 LINE L1 7351 7455 -330 1332 169 72 41 chr15 31320602 31320892 -70059629 + AluJb SINE Alu 1 299 -3 1659 216 8 35 chr15 31321094 31321469 -70059052 - MLT1A1 LTR MaLR 0 365 1 2145 96 0 7 chr15 31321965 31322247 -70058274 - AluSc SINE Alu -10 299 20 324 259 92 87 chr15 31324562 31324747 -70055774 + MLT1H LTR MaLR 107 292 -257 2274 97 7 0 chr15 31325497 31325805 -70054716 + AluSg SINE Alu 1 310 0 2707 36 0 0 chr15 31326220 31326526 -70053995 - AluY SINE Alu -5 306 1 425 237 47 33 chr15 31327656 31327867 -70052654 - L1ME4a LINE L1 0 6121 5908 405 58 0 0 chr15 31328876 31328928 -70051593 + (TG)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr15 31329414 31329436 -70051085 + AT_rich Low_complexity Low_complexity 1 22 0 505 252 37 106 chr15 31332622 31332868 -70047653 - MIR SINE MIR -20 242 14 21 36 0 0 chr15 31332951 31332979 -70047542 + AT_rich Low_complexity Low_complexity 1 28 0 222 233 0 0 chr15 31333051 31333094 -70047427 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 245 272 105 70 chr15 31333118 31333375 -70047146 - L1MC4 LINE L1 -122 7920 7655 375 289 118 54 chr15 31333671 31333875 -70046646 - MIR SINE MIR 0 262 46 363 330 165 0 chr15 31333995 31334177 -70046344 + L2 LINE L2 2557 2768 -546 326 255 21 0 chr15 31334184 31334278 -70046243 - MER5B DNA MER1_type -6 172 77 764 143 69 29 chr15 31334286 31334461 -70046060 - MER53 DNA DNA 0 189 8 297 213 16 0 chr15 31334494 31334555 -70045966 + MER5B DNA MER1_type 117 178 0 888 148 0 7 chr15 31335338 31335473 -70045048 + AluJo SINE Alu 1 134 -178 1836 193 30 30 chr15 31335604 31335720 -70044801 - MLT1A1 LTR MaLR 0 365 250 3362 144 34 0 chr15 31335720 31336256 -70044265 + MER41C LTR ERV1 1 554 0 1836 193 30 30 chr15 31336256 31336501 -70044020 - MLT1A1 LTR MaLR -114 251 4 322 378 64 23 chr15 31337022 31337194 -70043327 + L2 LINE L2 3085 3263 -9 2041 113 3 3 chr15 31337407 31337698 -70042823 + AluSx SINE Alu 1 291 -21 647 286 148 24 chr15 31339754 31340131 -70040390 + Charlie2b DNA MER1_type 2 425 -2437 429 290 21 14 chr15 31340144 31340289 -70040232 + Charlie2b DNA MER1_type 523 668 -2114 3054 223 72 92 chr15 31340395 31341806 -70038715 + Charlie2a DNA MER1_type 1469 2850 -12 790 262 22 56 chr15 31342507 31342774 -70037747 - MIR SINE MIR -1 261 4 22 0 0 0 chr15 31344735 31344757 -70035764 + AT_rich Low_complexity Low_complexity 1 22 0 279 306 90 99 chr15 31347165 31347743 -70032778 + L2 LINE L2 1763 2335 -979 310 274 24 12 chr15 31348038 31348122 -70032399 - L2 LINE L2 0 3313 3229 352 208 76 69 chr15 31348141 31348285 -70032236 + MIR SINE MIR 118 262 0 243 325 46 46 chr15 31348617 31348768 -70031753 - MIR SINE MIR -92 170 20 25 90 0 0 chr15 31349727 31349794 -70030727 + AT_rich Low_complexity Low_complexity 1 67 0 629 174 61 38 chr15 31350112 31350244 -70030277 - AluJo SINE Alu -177 135 1 192 161 0 0 chr15 31351562 31351593 -70028928 + L3b LINE CR1 1334 1364 -219 709 279 73 20 chr15 31351788 31352035 -70028486 + MIR SINE MIR 2 261 -1 219 192 356 0 chr15 31352742 31352815 -70027706 - MIR SINE MIR -1 261 163 664 289 104 20 chr15 31352901 31353258 -70027263 + L2 LINE L2 2474 2860 -454 182 167 0 24 chr15 31353874 31353916 -70026605 + (CAT)n Simple_repeat Simple_repeat 2 42 0 336 283 272 16 chr15 31353917 31354101 -70026420 - MIR SINE MIR -1 261 31 868 123 0 48 chr15 31354190 31354336 -70026185 - MER1B DNA MER1_type -1 338 200 876 61 0 53 chr15 31354337 31354449 -70026072 + LTR10C LTR ERV1 1 107 -484 2180 114 3 0 chr15 31354449 31354747 -70025774 - AluSq SINE Alu -14 299 1 876 61 0 53 chr15 31354747 31354766 -70025755 + LTR10C LTR ERV1 107 125 -466 772 162 86 52 chr15 31356573 31356783 -70023738 - MER46A DNA MER2_type -19 217 1 * 833 148 67 13 chr15 31356648 31356797 -70023724 + MER46A DNA MER2_type 3 159 -77 253 304 59 20 chr15 31356801 31356903 -70023618 - MIR SINE MIR -108 154 49 251 327 50 20 chr15 31358280 31358381 -70022140 - L2 LINE L2 -3 3310 3207 1900 108 36 14 chr15 31359674 31359974 -70020547 - AluSx SINE Alu 0 306 1 430 275 151 82 chr15 31360517 31360921 -70019600 - HAL1 LINE L1 -2075 432 1 340 344 32 13 chr15 31361006 31361163 -70019358 + MIR SINE MIR 37 196 -66 2060 126 0 10 chr15 31361174 31361475 -70019046 + AluSx SINE Alu 9 306 -6 223 27 27 27 chr15 31361997 31362034 -70018487 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 230 250 0 0 chr15 31363255 31363327 -70017194 + L1MC4 LINE L1 6635 6706 -1336 2037 64 0 8 chr15 31363984 31364235 -70016286 - AluY SINE Alu -24 287 39 183 403 73 21 chr15 31364621 31364909 -70015612 - L2 LINE L2 -626 2688 2386 1647 72 0 5 chr15 31365070 31365361 -70015160 - L1P LINE L1 -734 5427 5138 5212 94 12 6 chr15 31365361 31366079 -70014442 + L1PA11 LINE L1 5436 6172 -2 2341 94 0 10 chr15 31366247 31366546 -70013975 + AluSx SINE Alu 7 304 -8 513 0 0 0 chr15 31366546 31366603 -70013918 + (TA)n Simple_repeat Simple_repeat 2 58 0 1085 135 53 19 chr15 31367705 31367913 -70012608 + L1PA8 LINE L1 5955 6169 -3 227 339 79 0 chr15 31368331 31368448 -70012073 + MIR SINE MIR 24 149 -61 202 333 0 65 chr15 31368608 31368701 -70011820 + MIR SINE MIR 20 106 -102 3336 153 49 33 chr15 31368870 31369671 -70010850 + pTR5 LTR ERV1 733 2021 -417 319 214 0 36 chr15 31369676 31369760 -70010761 + LTR30 LTR ERV1 544 624 -98 2146 153 3 0 chr15 31369760 31370100 -70010421 + pTR5 LTR ERV1 52 392 -2046 349 228 30 20 chr15 31370241 31370342 -70010179 + MLT1I LTR MaLR 308 409 0 417 326 30 8 chr15 31374622 31374754 -70005767 - MER5A DNA MER1_type 0 189 55 192 283 76 83 chr15 31374649 31374794 -70005727 + MER5A DNA MER1_type 43 186 -3 * 235 327 59 0 chr15 31376401 31376502 -70004019 - MER91C DNA MER1_type 0 140 34 1708 197 34 21 chr15 31377391 31377776 -70002745 + MLT1B LTR MaLR 1 390 0 3122 187 29 0 chr15 31378411 31378957 -70001564 + MER68 LTR ERV1 1 562 0 22 94 0 0 chr15 31379028 31379092 -70001429 + AT_rich Low_complexity Low_complexity 1 64 0 621 294 60 12 chr15 31379096 31379344 -70001177 + L1M4 LINE L1 8 267 -6275 1690 250 67 13 chr15 31379381 31379973 -70000548 + L1M4 LINE L1 1657 2375 -4271 14616 125 25 13 chr15 31379974 31380804 -69999717 - Tigger1 DNA MER2_type 0 2418 1599 2256 114 0 3 chr15 31380804 31381101 -69999420 - AluSq SINE Alu -17 296 1 14616 125 25 13 chr15 31381101 31382569 -69997952 - Tigger1 DNA MER2_type -819 1599 93 320 274 82 67 chr15 31382578 31382713 -69997808 + L2 LINE L2 3177 3313 0 282 338 32 52 chr15 31382826 31382980 -69997541 - MER102b DNA MER1_type -39 302 152 2193 125 0 0 chr15 31383443 31383738 -69996783 - AluSx SINE Alu -13 299 5 296 125 0 18 chr15 31383764 31383820 -69996701 + (CA)n Simple_repeat Simple_repeat 2 56 0 792 276 135 52 chr15 31383906 31384387 -69996134 - LTR33 LTR ERVL 0 521 1 1457 186 0 53 chr15 31384570 31384871 -69995650 - AluJo SINE Alu -27 285 1 227 280 0 0 chr15 31385685 31385735 -69994786 + LTR30 LTR ERV1 3 52 -670 2653 135 9 32 chr15 31385735 31386173 -69994348 + LTR12 LTR ERV1 53 480 -234 24 0 0 0 chr15 31387004 31387028 -69993493 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr15 31388029 31388052 -69992469 + AT_rich Low_complexity Low_complexity 1 23 0 352 251 84 70 chr15 31388095 31388310 -69992211 + L1ME LINE L1 5569 5786 -335 562 335 31 0 chr15 31389757 31389918 -69990603 - MIR3 SINE MIR -11 197 32 261 0 0 0 chr15 31390476 31390505 -69990016 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 549 279 97 19 chr15 31390797 31391297 -69989224 + L1MDb LINE L1 1147 1591 -4951 32 26 0 0 chr15 31391300 31391339 -69989182 + AT_rich Low_complexity Low_complexity 1 39 0 239 333 0 15 chr15 31392098 31392164 -69988357 + MIR SINE MIR 23 87 -175 254 258 42 58 chr15 31392196 31392316 -69988205 - L2 LINE L2 -181 3091 2974 299 292 62 39 chr15 31393080 31393258 -69987263 + LTR33 LTR ERVL 275 456 -65 556 291 114 46 chr15 31396091 31396528 -69983993 - MLT1J LTR MaLR -44 467 1 201 147 0 0 chr15 31398404 31398438 -69982083 + (T)n Simple_repeat Simple_repeat 1 34 0 345 343 91 14 chr15 31399754 31399973 -69980548 - L3 LINE CR1 -156 1421 1186 29 28 0 0 chr15 31401251 31401287 -69979234 + AT_rich Low_complexity Low_complexity 1 36 0 278 295 8 23 chr15 31401523 31401652 -69978869 + (TA)n Simple_repeat Simple_repeat 1 127 0 206 118 0 0 chr15 31401694 31401728 -69978793 + (TA)n Simple_repeat Simple_repeat 1 34 0 1536 216 74 29 chr15 31402607 31403006 -69977515 - L1MB7 LINE L1 -78 6106 5686 1881 131 180 11 chr15 31403006 31403372 -69977149 - MSTA LTR MaLR 0 428 1 1536 216 74 29 chr15 31403372 31403393 -69977128 - L1MB7 LINE L1 -498 5686 5667 279 307 147 37 chr15 31404141 31404359 -69976162 + MLT1L LTR MaLR 374 615 0 254 254 0 0 chr15 31405084 31405143 -69975378 + L1ME LINE L1 195 253 -5952 507 282 102 76 chr15 31405863 31406786 -69973735 + L1ME LINE L1 860 1806 -4590 1053 218 137 73 chr15 31407009 31407530 -69972991 + L1ME LINE L1 2256 2819 -3396 2288 110 3 0 chr15 31407530 31407838 -69972683 - AluSx SINE Alu -1 311 3 1053 218 137 73 chr15 31407838 31407893 -69972628 + L1ME LINE L1 2819 2869 -3346 223 234 0 0 chr15 31408064 31408111 -69972410 + (CA)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr15 31408545 31408568 -69971953 + AT_rich Low_complexity Low_complexity 1 23 0 256 368 101 33 chr15 31408860 31409197 -69971324 - L2 LINE L2 -558 2756 2397 23 0 0 0 chr15 31411367 31411390 -69969131 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr15 31412244 31412276 -69968245 + AT_rich Low_complexity Low_complexity 1 32 0 1451 287 53 9 chr15 31412921 31413357 -69967164 + LTR16C LTR ERVL 28 482 -9 394 283 90 86 chr15 31413441 31413967 -69966554 + L1M4c LINE L1 911 1589 -4974 243 258 45 0 chr15 31414048 31414114 -69966407 + L1M4c LINE L1 1527 1595 -4789 307 295 116 90 chr15 31414630 31415017 -69965504 + L1ME LINE L1 103 499 -5706 1950 72 0 12 chr15 31415199 31415448 -69965073 + AluY SINE Alu 45 290 -21 332 285 146 62 chr15 31416075 31416384 -69964137 + L1ME LINE L1 1874 2208 -4188 627 291 97 31 chr15 31416450 31417162 -69963359 + L1ME LINE L1 2255 3013 -3202 6585 185 56 24 chr15 31417166 31418536 -69961985 - MER52A LTR ERV1 0 1755 374 34 55 0 0 chr15 31418647 31418702 -69961819 + AT_rich Low_complexity Low_complexity 1 55 0 697 81 30 0 chr15 31419157 31419256 -69961265 - LTR22B LTR ERVK -390 102 1 769 242 73 10 chr15 31419347 31419636 -69960885 + L1ME LINE L1 4387 4693 -1522 225 178 0 0 chr15 31419636 31419681 -69960840 + (TG)n Simple_repeat Simple_repeat 1 45 0 640 272 109 53 chr15 31419722 31420592 -69959929 + L1ME LINE L1 4688 5622 -611 * 1425 254 62 15 chr15 31420589 31421125 -69959396 + L1MC4 LINE L1 5276 5836 -1972 1164 241 48 38 chr15 31421254 31421903 -69958618 + L1MC4 LINE L1 6041 6618 -1190 1188 227 63 16 chr15 31421995 31422312 -69958209 + L1MC4 LINE L1 6614 6945 -1097 197 316 63 0 chr15 31423076 31423171 -69957350 + MIR SINE MIR 65 165 -97 240 273 15 0 chr15 31424620 31424686 -69955835 + (CA)n Simple_repeat Simple_repeat 2 68 0 27 0 0 0 chr15 31424910 31424937 -69955584 + AT_rich Low_complexity Low_complexity 1 27 0 380 269 162 78 chr15 31427370 31427641 -69952880 - MLT1I LTR MaLR -18 391 98 21 36 0 0 chr15 31428188 31428216 -69952305 + AT_rich Low_complexity Low_complexity 1 28 0 473 242 168 0 chr15 31428703 31428852 -69951669 + MIR SINE MIR 89 262 0 580 190 86 9 chr15 31429534 31429650 -69950871 + MER63 DNA MER1_type 1 751 -85 1487 236 92 36 chr15 31430469 31430956 -69949565 - LTR48B LTR ERV1 0 614 122 13152 219 37 28 chr15 31431018 31433922 -69946599 + L1MA5A LINE L1 889 3766 -3105 1675 169 6 29 chr15 31433922 31434235 -69946286 + AluJo SINE Alu 1 306 -6 13152 219 37 28 chr15 31434235 31434692 -69945829 + L1MA5A LINE L1 3766 4217 -2654 198 71 0 0 chr15 31434692 31434720 -69945801 + (CA)n Simple_repeat Simple_repeat 2 29 0 13152 219 37 28 chr15 31434720 31436529 -69943992 + L1MA5A LINE L1 4217 6128 -743 3962 147 15 41 chr15 31436530 31437258 -69943263 + MER50 LTR ERV1 1 709 -25 4582 139 32 8 chr15 31437258 31438050 -69942471 + L1MA5A LINE L1 6124 6934 -5 7221 40 7 26 chr15 31438919 31439968 -69940553 - L1PA7 LINE L1 -3 6151 5106 23 33 0 0 chr15 31440460 31440490 -69940031 + AT_rich Low_complexity Low_complexity 1 30 0 238 276 48 57 chr15 31440527 31440632 -69939889 + L2 LINE L2 3164 3267 -5 254 381 83 40 chr15 31442531 31442856 -69937665 + L2 LINE L2 2918 3256 -16 466 356 97 25 chr15 31443403 31443951 -69936570 + L2 LINE L2 2261 2847 -467 280 301 110 31 chr15 31444075 31444238 -69936283 - MIR SINE MIR -56 206 31 247 356 0 0 chr15 31444515 31444602 -69935919 + L2 LINE L2 3227 3313 0 1999 148 3 3 chr15 31444952 31445262 -69935259 - AluSx SINE Alu 0 312 3 4367 221 48 66 chr15 31445337 31446289 -69934232 + L1M4 LINE L1 2915 3883 -2263 1176 184 126 50 chr15 31446289 31446566 -69933955 + AluJo SINE Alu 1 298 -4 4367 221 48 66 chr15 31446566 31446606 -69933915 + L1M4 LINE L1 3883 3922 -2224 1163 211 160 13 chr15 31446606 31446924 -69933597 - MLT1A1 LTR MaLR 0 365 1 4367 221 48 66 chr15 31446924 31447630 -69932891 + L1M4 LINE L1 3922 4583 -1563 554 262 13 0 chr15 31447625 31447774 -69932747 + L1MA10 LINE L1 6183 6333 -1 * 254 356 59 7 chr15 31447884 31448019 -69932502 + MIR SINE MIR 88 229 -33 254 390 8 0 chr15 31448476 31448594 -69931927 + MIR3 SINE MIR 77 195 -13 22 0 0 0 chr15 31448674 31448696 -69931825 + AT_rich Low_complexity Low_complexity 1 22 0 222 298 0 0 chr15 31449435 31449492 -69931029 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 243 125 0 0 chr15 31449493 31449533 -69930988 + (GA)n Simple_repeat Simple_repeat 2 41 0 2115 153 75 23 chr15 31450982 31451360 -69929161 - L1MB3 LINE L1 -2 6181 5775 2504 114 22 0 chr15 31451360 31451727 -69928794 - THE1C LTR MaLR 0 375 1 2115 153 75 23 chr15 31451727 31451787 -69928734 - L1MB3 LINE L1 -408 5775 5720 394 295 71 55 chr15 31451933 31452187 -69928334 - MER102b DNA MER1_type -2 339 82 283 275 101 7 chr15 31452515 31452653 -69927868 - L1ME4a LINE L1 -79 6042 5892 192 179 0 0 chr15 31452980 31453019 -69927502 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 267 123 15 31 chr15 31453242 31453307 -69927214 + (TA)n Simple_repeat Simple_repeat 1 64 0 28 71 0 0 chr15 31453824 31453880 -69926641 + AT_rich Low_complexity Low_complexity 1 56 0 673 291 93 12 chr15 31454784 31455128 -69925393 + L1MEc LINE L1 1277 1648 -4748 655 162 77 49 chr15 31455208 31455436 -69925085 + MER106B DNA MER1_type 1 1059 0 866 273 105 20 chr15 31455436 31455997 -69924524 + L1M4 LINE L1 4238 4846 -1300 268 250 208 30 chr15 31455998 31456166 -69924355 - MLT1K LTR MaLR -295 293 96 37 0 0 0 chr15 31458507 31458544 -69921977 + AT_rich Low_complexity Low_complexity 1 37 0 432 310 95 0 chr15 31459090 31459248 -69921273 - MIR3 SINE MIR -12 196 24 336 333 76 20 chr15 31460128 31460326 -69920195 - MIR SINE MIR -13 249 41 1628 173 52 9 chr15 31460638 31460880 -69919641 + MER44D DNA MER2_type 1 231 -2260 1294 194 107 28 chr15 31460880 31461199 -69919322 - MER2 DNA MER2_type 0 344 1 1628 173 52 9 chr15 31461199 31461280 -69919241 + MER44D DNA MER2_type 231 608 -1 2087 150 28 3 chr15 31461321 31461675 -69918846 - MLT1A1 LTR MaLR -2 363 1 900 209 19 14 chr15 31461780 31461990 -69918531 - L1MD2 LINE L1 -2 6357 6147 5884 165 18 6 chr15 31462495 31464248 -69916273 - L1MA9 LINE L1 -2 6310 4536 5296 164 32 25 chr15 31464244 31465152 -69915369 + L1 LINE L1 3392 4311 -1835 * 2259 81 10 0 chr15 31465152 31465448 -69915073 + AluSp SINE Alu 1 299 -14 5296 164 32 25 chr15 31465448 31465657 -69914864 + L1 LINE L1 4311 4517 -1629 913 280 8 4 chr15 31465894 31466130 -69914391 + MIR SINE MIR 8 244 -18 322 39 39 0 chr15 31466361 31466413 -69914108 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 9935 24 8 0 chr15 31466413 31468358 -69912163 - L1PA2 LINE L1 -13 6142 4189 594 169 44 132 chr15 31468362 31468679 -69911842 + MLT2D LTR ERVL 156 414 0 426 290 142 0 chr15 31468711 31468873 -69911648 - MIR SINE MIR -75 187 3 269 361 45 7 chr15 31468921 31469076 -69911445 - L2 LINE L2 -1449 1865 1705 278 31 0 0 chr15 31469904 31469936 -69910585 + (T)n Simple_repeat Simple_repeat 1 32 0 4470 35 0 26 chr15 31470123 31470732 -69909789 + L1PA2 LINE L1 5563 6155 0 746 203 14 0 chr15 31470733 31470881 -69909640 - MLT2B1 LTR ERVL -358 162 13 206 288 45 0 chr15 31471459 31471525 -69908996 + L2 LINE L2 3204 3272 0 205 269 0 0 chr15 31471511 31471563 -69908958 + (TGAA)n Simple_repeat Simple_repeat 4 55 0 * 288 278 127 8 chr15 31471763 31471889 -69908632 + MIR SINE MIR 121 261 -1 217 342 114 25 chr15 31472602 31472839 -69907682 - L2 LINE L2 -19 3253 2996 181 339 159 22 chr15 31473558 31473785 -69906736 - L2 LINE L2 -19 3253 2996 289 116 0 0 chr15 31474225 31474268 -69906253 + tRNA-Gln-CAG tRNA tRNA 1 43 -32 567 306 49 6 chr15 31474631 31474814 -69905707 - MIR SINE MIR -15 247 57 1972 124 0 7 chr15 31475143 31475450 -69905071 - L1PA8 LINE L1 0 6172 5868 324 258 212 12 chr15 31476140 31476441 -69904080 + LTR50 LTR ERVL 38 473 -322 291 225 28 0 chr15 31476465 31476536 -69903985 + LTR33A LTR ERVL 451 523 0 239 233 30 15 chr15 31476670 31476838 -69903683 + (TA)n Simple_repeat Simple_repeat 1 170 0 22 35 0 0 chr15 31477582 31477611 -69902910 + AT_rich Low_complexity Low_complexity 1 29 0 624 182 0 9 chr15 31478428 31478538 -69901983 + Tigger2a DNA MER2_type 1 109 -325 195 355 75 0 chr15 31478615 31478708 -69901813 - L2 LINE L2 -20 3252 3153 937 178 59 5 chr15 31478956 31479175 -69901346 + L1MA4 LINE L1 6064 6294 -6 224 337 0 0 chr15 31479228 31479320 -69901201 + A-rich Low_complexity Low_complexity 1 92 0 298 212 153 59 chr15 31480384 31480502 -69900019 - MIR SINE MIR -64 198 70 428 191 177 32 chr15 31481095 31481315 -69899206 - MER113 DNA MER1_type? -258 263 12 2361 190 109 16 chr15 31481345 31481904 -69898617 + MER90 LTR ERV1 4 614 0 2264 112 0 0 chr15 31481991 31482287 -69898234 + AluSg SINE Alu 3 298 -12 270 236 45 56 chr15 31482530 31482619 -69897902 - MIR SINE MIR -152 110 23 274 300 80 21 chr15 31484261 31484393 -69896128 - MIR SINE MIR -63 145 18 2151 159 6 6 chr15 31486220 31486584 -69893937 + MER47A DNA MER2_type 3 366 0 743 195 65 50 chr15 31487494 31487694 -69892827 - MER3 DNA MER1_type 0 209 7 1894 92 0 46 chr15 31487862 31488144 -69892377 - AluSx SINE Alu -1 311 43 224 214 102 51 chr15 31489910 31490008 -69890513 + L2 LINE L2 3202 3304 -9 200 327 102 51 chr15 31490075 31490390 -69890131 + L2 LINE L2 2935 3265 -48 380 312 0 9 chr15 31491145 31491254 -69889267 + MIR SINE MIR 15 122 -140 315 272 88 80 chr15 31492340 31492590 -69887931 - L1ME4a LINE L1 -234 5887 5636 31 44 0 0 chr15 31492610 31492655 -69887866 + AT_rich Low_complexity Low_complexity 1 45 0 499 269 48 0 chr15 31492844 31493052 -69887469 - L1MC4a LINE L1 -1897 5911 5694 258 81 0 0 chr15 31493059 31493096 -69887425 + (TG)n Simple_repeat Simple_repeat 2 38 0 200 176 0 0 chr15 31493169 31493203 -69887318 + (TG)n Simple_repeat Simple_repeat 1 34 0 26 30 0 0 chr15 31493248 31493281 -69887240 + AT_rich Low_complexity Low_complexity 1 33 0 2572 177 19 46 chr15 31493606 31493846 -69886675 - MLT1C LTR MaLR -5 457 244 667 405 35 53 chr15 31493846 31494280 -69886241 - MSTC LTR MaLR 0 428 3 2572 177 19 46 chr15 31494280 31494518 -69886003 - MLT1C LTR MaLR -218 244 1 356 228 223 27 chr15 31494858 31495042 -69885479 - L1M4 LINE L1 -1717 4429 4210 25 51 0 0 chr15 31495042 31495081 -69885440 + AT_rich Low_complexity Low_complexity 1 39 0 299 368 7 0 chr15 31495159 31495295 -69885226 - HAL1 LINE L1 -793 1714 1578 337 284 47 24 chr15 31495362 31495489 -69885032 - HAL1 LINE L1 -1051 1456 1327 8296 148 13 18 chr15 31495646 31496129 -69884392 - L1PA11 LINE L1 -6 6168 5684 1983 116 40 10 chr15 31496129 31496430 -69884091 + AluY SINE Alu 1 310 -1 8296 148 13 18 chr15 31496430 31498259 -69882262 - L1PA11 LINE L1 -490 5684 3882 205 193 53 0 chr15 31498267 31498324 -69882197 + (TA)n Simple_repeat Simple_repeat 2 61 0 2310 259 88 13 chr15 31498333 31499686 -69880835 - L1ME2 LINE L1 -9 6155 4699 233 179 0 18 chr15 31499807 31499863 -69880658 + GA-rich Low_complexity Low_complexity 4 58 0 5853 169 34 13 chr15 31500324 31501837 -69878684 + L1MC1 LINE L1 4787 6333 0 2015 132 0 3 chr15 31503254 31503550 -69876971 - AluSx SINE Alu -17 295 1 13347 205 32 14 chr15 31503850 31506404 -69874117 + L1M4c LINE L1 21 2528 -3854 1217 228 118 0 chr15 31506404 31506667 -69873854 - AluJo SINE Alu -8 294 1 13347 205 32 14 chr15 31506667 31509471 -69871050 + L1M4c LINE L1 2528 5476 -906 239 282 26 26 chr15 31509671 31509749 -69870772 + MER5A DNA MER1_type 80 157 -32 819 173 0 0 chr15 31511336 31511469 -69869052 - FLAM_A SINE Alu 0 133 1 1720 159 32 15 chr15 31511484 31511823 -69868698 - L1MB3 LINE L1 -8 6175 5831 1485 110 17 0 chr15 31511824 31512060 -69868461 + L1P LINE L1 4837 5076 -1070 197 394 0 39 chr15 31513684 31513788 -69866733 + L2 LINE L2 2991 3090 -182 431 226 61 0 chr15 31513956 31514071 -69866450 + MER69A DNA AcHobo 56 177 0 779 208 6 50 chr15 31514434 31514593 -69865928 - FRAM SINE Alu -22 154 3 1745 163 40 9 chr15 31514865 31515215 -69865306 + L1PA16 LINE L1 5790 6150 -16 22 70 0 0 chr15 31515899 31515942 -69864579 + AT_rich Low_complexity Low_complexity 1 43 0 661 205 18 18 chr15 31516026 31516305 -69864216 + GA-rich Low_complexity Low_complexity 1 279 0 210 264 76 36 chr15 31517675 31517785 -69862736 - MER5A DNA MER1_type -39 150 27 255 310 0 14 chr15 31517955 31518026 -69862495 - L2 LINE L2 -2 3270 3201 1203 252 140 29 chr15 31518252 31518866 -69861655 - L1ME3A LINE L1 0 6170 5459 831 286 85 28 chr15 31518873 31518990 -69861531 - L1ME3A LINE L1 -1082 5064 4955 2119 80 11 3 chr15 31518990 31519307 -69861214 - AluY SINE Alu 0 319 1 831 286 85 28 chr15 31519307 31519838 -69860683 - L1ME3A LINE L1 -1191 4955 4378 1015 234 104 27 chr15 31519845 31520221 -69860300 - L1ME1 LINE L1 -3 6163 5759 3432 241 70 29 chr15 31520461 31521190 -69859331 - L1ME1 LINE L1 -487 5679 4981 2150 144 30 25 chr15 31521190 31521552 -69858969 - THE1B LTR MaLR 0 364 1 3432 241 70 29 chr15 31521552 31521792 -69858729 - L1ME1 LINE L1 -1185 4981 4752 231 36 0 0 chr15 31521792 31521820 -69858701 + (CTATT)n Simple_repeat Simple_repeat 4 31 0 3432 241 70 29 chr15 31521820 31522320 -69858201 - L1ME1 LINE L1 -1414 4752 4152 650 291 81 19 chr15 31522309 31522739 -69857782 - L1ME3A LINE L1 -1737 4409 3953 * 774 271 63 25 chr15 31522764 31523195 -69857326 + L1ME4a LINE L1 3342 3788 -2358 642 216 58 124 chr15 31523197 31523438 -69857083 + LTR40b LTR ERVL 1 225 -237 280 287 43 9 chr15 31523608 31523723 -69856798 + ERVL LTR ERVL 3966 4084 -1680 484 276 74 20 chr15 31523838 31524041 -69856480 + LTR16A LTR ERVL 196 409 -41 313 351 110 9 chr15 31524500 31524828 -69855693 + ERVL LTR ERVL 4832 5192 -572 24 0 0 0 chr15 31525942 31525966 -69854555 + AT_rich Low_complexity Low_complexity 1 24 0 1225 266 28 8 chr15 31526019 31526413 -69854108 - L1MB7 LINE L1 -1 6183 5782 346 246 54 54 chr15 31526655 31526785 -69853736 + L1ME4a LINE L1 4904 5033 -1113 321 292 179 40 chr15 31527152 31527477 -69853044 + L1ME4a LINE L1 5484 5853 -268 264 70 0 0 chr15 31527688 31527731 -69852790 + L1ME4a LINE L1 6063 6105 -16 243 308 82 34 chr15 31528091 31528299 -69852222 + L2 LINE L2 1706 1923 -1391 252 296 28 37 chr15 31528539 31528647 -69851874 + MIR SINE MIR 156 262 0 217 357 82 10 chr15 31528805 31528903 -69851618 - L2 LINE L2 -19 3253 3149 202 294 239 0 chr15 31529767 31529859 -69850662 + L2 LINE L2 3159 3272 0 27 0 0 0 chr15 31530298 31530325 -69850196 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr15 31531353 31531381 -69849140 + AT_rich Low_complexity Low_complexity 1 28 0 493 274 121 68 chr15 31532257 31532564 -69847957 + L2 LINE L2 2944 3266 -47 201 39 0 0 chr15 31533924 31533950 -69846571 + (CA)n Simple_repeat Simple_repeat 1 26 0 192 403 126 0 chr15 31534814 31534933 -69845588 + L2 LINE L2 2610 2743 -571 26 0 0 0 chr15 31535930 31535956 -69844565 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr15 31536115 31536143 -69844378 + AT_rich Low_complexity Low_complexity 1 28 0 791 116 8 0 chr15 31536143 31536264 -69844257 - L1MA1 LINE L1 -6 6296 6175 23 0 0 0 chr15 31536317 31536340 -69844181 + AT_rich Low_complexity Low_complexity 1 23 0 311 249 110 64 chr15 31537784 31537957 -69842564 - MLT1K LTR MaLR -8 580 400 394 254 80 85 chr15 31538038 31538262 -69842259 - MLT1K LTR MaLR -356 232 10 1885 256 49 25 chr15 31538414 31538968 -69841553 + MLT1F1 LTR MaLR 1 567 0 267 273 82 0 chr15 31538995 31539105 -69841416 + MER103 DNA DNA 2 120 -46 212 143 0 0 chr15 31539105 31539140 -69841381 + (GA)n Simple_repeat Simple_repeat 2 36 0 817 189 6 17 chr15 31539347 31539522 -69840999 + MER96B DNA MER1_type? 1 173 -244 798 237 45 0 chr15 31541022 31541199 -69839322 - MER58B DNA MER1_type 0 341 157 263 341 163 31 chr15 31541611 31541936 -69838585 + L3 LINE CR1 1065 1432 -145 208 182 0 0 chr15 31542376 31542409 -69838112 + L3 LINE CR1 1535 1567 -10 965 137 101 12 chr15 31542678 31542846 -69837675 + MER2 DNA MER2_type 14 196 -149 1487 194 19 50 chr15 31542873 31543193 -69837328 - AluJo SINE Alu -2 310 1 183 329 114 0 chr15 31544034 31544113 -69836408 + L2 LINE L2 3207 3294 -19 219 214 22 56 chr15 31544233 31544322 -69836199 + T-rich Low_complexity Low_complexity 3 88 0 1923 259 63 61 chr15 31544608 31545274 -69835247 - L1ME3A LINE L1 -12 6092 5422 2455 75 0 0 chr15 31545274 31545569 -69834952 - AluY SINE Alu -16 295 1 1923 259 63 61 chr15 31545569 31545793 -69834728 - L1ME3A LINE L1 -682 5422 5200 310 277 29 0 chr15 31545783 31545920 -69834601 - L1ME3A LINE L1 -4130 2131 1991 * 664 270 63 80 chr15 31546093 31547005 -69833516 - L1ME LINE L1 -4615 1646 719 22 0 0 0 chr15 31547829 31547851 -69832670 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr15 31547954 31547975 -69832546 + AT_rich Low_complexity Low_complexity 1 21 0 2544 97 40 0 chr15 31548819 31549169 -69831352 - THE1B LTR MaLR 0 364 1 208 139 0 0 chr15 31549423 31549459 -69831062 + (T)n Simple_repeat Simple_repeat 1 36 0 23 33 0 0 chr15 31549917 31549947 -69830574 + AT_rich Low_complexity Low_complexity 1 30 0 440 125 0 68 chr15 31550153 31550241 -69830280 + L1PA14 LINE L1 6078 6159 -2 21 36 0 0 chr15 31550461 31550489 -69830032 + AT_rich Low_complexity Low_complexity 1 28 0 42849 34 21 1 chr15 31550489 31556562 -69823959 + L1PA3 LINE L1 4 6155 0 906 280 8 4 chr15 31556788 31557024 -69823497 - MIR SINE MIR -18 244 8 5253 162 32 25 chr15 31557261 31557470 -69823051 - L1 LINE L1 -1629 4517 4311 2295 81 10 0 chr15 31557470 31557766 -69822755 - AluSp SINE Alu -14 299 1 5253 162 32 25 chr15 31557766 31558674 -69821847 - L1 LINE L1 -1835 4311 3392 * 5837 164 18 6 chr15 31558672 31560423 -69820098 + L1MA9 LINE L1 4538 6310 -2 937 200 19 14 chr15 31560928 31561138 -69819383 + L1MD2 LINE L1 6147 6357 -2 2106 150 28 3 chr15 31561243 31561597 -69818924 + MLT1A1 LTR MaLR 1 363 -2 1617 173 52 9 chr15 31561638 31561719 -69818802 - MER44D DNA MER2_type -1883 608 532 1284 194 107 28 chr15 31561719 31562038 -69818483 + MER2 DNA MER2_type 1 344 0 1617 173 52 9 chr15 31562038 31562280 -69818241 - MER44D DNA MER2_type -1959 532 1 334 333 76 20 chr15 31562592 31562790 -69817731 + MIR SINE MIR 41 249 -13 439 310 95 0 chr15 31563670 31563828 -69816693 + MIR3 SINE MIR 24 196 -12 2176 139 64 79 chr15 31566230 31567069 -69813452 - MER21A LTR ERV1 -29 902 14 2277 125 19 27 chr15 31569361 31569728 -69810793 - THE1B LTR MaLR 0 364 1 1518 222 43 2 chr15 31569854 31570263 -69810258 + MLT2B1 LTR ERVL 2 480 -40 225 108 0 0 chr15 31570264 31570301 -69810220 + (TG)n Simple_repeat Simple_repeat 2 38 0 249 250 31 0 chr15 31570308 31570372 -69810149 + (CATA)n Simple_repeat Simple_repeat 1 66 0 304 97 43 0 chr15 31570373 31570425 -69810096 + MLT2B1 LTR ERVL 391 520 0 2098 55 7 41 chr15 31570966 31571296 -69809225 - AluY SINE Alu 0 320 1 255 303 21 56 chr15 31571898 31572040 -69808481 + L3b LINE CR1 1311 1447 -136 46 78 0 0 chr15 31572576 31572678 -69807843 + AT_rich Low_complexity Low_complexity 1 102 0 994 142 0 0 chr15 31575528 31575676 -69804845 + AluSq/x SINE Alu 2 149 -163 5675 66 5 0 chr15 31575676 31576828 -69803693 - L1PA7 LINE L1 -178 5976 4821 1623 203 136 50 chr15 31576896 31577478 -69803043 + LTR27 LTR ERV1 3 634 -2 432 227 73 14 chr15 31579694 31579919 -69800602 + MER20B DNA MER1_type 236 499 -284 804 241 113 14 chr15 31580083 31580374 -69800147 + MER5C DNA MER1_type 5 324 0 5577 165 33 7 chr15 31580612 31582359 -69798162 + L1PA16 LINE L1 4377 6166 0 236 292 17 33 chr15 31582548 31582668 -69797853 + L1M4 LINE L1 2647 2764 -3382 1089 186 22 35 chr15 31582671 31582897 -69797624 + AluJo SINE Alu 1 223 -89 202 275 29 14 chr15 31582914 31582983 -69797538 + MIR SINE MIR 123 192 -70 422 108 14 27 chr15 31582983 31583057 -69797464 + AluJo SINE Alu 225 297 -15 623 296 62 22 chr15 31583262 31583620 -69796901 + L1M4 LINE L1 3026 3397 -2749 234 258 34 22 chr15 31584039 31584128 -69796393 + (TATG)n Simple_repeat Simple_repeat 3 92 0 443 320 86 6 chr15 31584831 31585006 -69795515 + MIR SINE MIR 69 255 -7 548 344 122 22 chr15 31585529 31586101 -69794420 - L2 LINE L2 0 3313 2689 1251 300 36 16 chr15 31586415 31586911 -69793610 + L1MC3 LINE L1 1 506 -5539 314 303 16 25 chr15 31586928 31587050 -69793471 + MIR SINE MIR 101 221 -41 2448 224 34 40 chr15 31587530 31588653 -69791868 + L1MC3 LINE L1 551 1680 -4851 10935 201 25 55 chr15 31588656 31590306 -69790215 + L1MC3 LINE L1 4726 6424 -1779 266 229 0 0 chr15 31590306 31590354 -69790167 + MER66B LTR ERV1 298 345 -141 10935 201 25 55 chr15 31590354 31590516 -69790005 + L1MC3 LINE L1 6424 6589 -1614 1930 171 3 0 chr15 31590516 31590825 -69789696 + AluJb SINE Alu 1 310 -2 10935 201 25 55 chr15 31590825 31591697 -69788824 + L1MC3 LINE L1 6589 7486 -717 2487 119 8 3 chr15 31591697 31592059 -69788462 - THE1B LTR MaLR 0 364 1 1983 144 3 6 chr15 31592067 31592380 -69788141 + AluJb SINE Alu 1 312 0 10935 201 25 55 chr15 31592380 31593220 -69787301 + L1MC3 LINE L1 7493 8203 0 329 258 97 16 chr15 31593313 31593437 -69787084 + LTR67 LTR ERVL 398 531 -26 2130 131 3 0 chr15 31594026 31594324 -69786197 + AluSg SINE Alu 1 299 -11 254 326 43 0 chr15 31595219 31595311 -69785210 + LTR16C LTR ERVL 251 346 -145 610 339 68 49 chr15 31595853 31597076 -69783445 + ERVL LTR ERVL 2527 3776 -1878 397 227 64 118 chr15 31597378 31597581 -69782940 + ERVL LTR ERVL 4134 4325 -1329 450 0 0 0 chr15 31597632 31597682 -69782839 + (TA)n Simple_repeat Simple_repeat 2 51 0 6091 100 46 9 chr15 31597682 31598651 -69781870 - L1PA10 LINE L1 -11 6157 5177 6101 128 4 2 chr15 31598651 31599606 -69780915 + L1PA10 LINE L1 4194 5150 -996 1166 341 7 2 chr15 31599623 31600036 -69780485 + ERVL LTR ERVL 4459 4873 -891 4975 129 9 14 chr15 31600104 31600889 -69779632 + L1PA15 LINE L1 5382 6162 -3 418 272 169 44 chr15 31601352 31601751 -69778770 - MLT1H LTR MaLR -10 539 17 23 54 0 0 chr15 31602276 31602313 -69778208 + AT_rich Low_complexity Low_complexity 1 37 0 1942 131 21 0 chr15 31602876 31603167 -69777354 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr15 31603297 31603319 -69777202 + AT_rich Low_complexity Low_complexity 1 22 0 405 283 84 50 chr15 31604985 31605053 -69775468 + L1ME4a LINE L1 5518 5582 -539 1861 176 39 0 chr15 31605053 31605388 -69775133 + MER7A DNA MER2_type 1 346 0 405 283 84 50 chr15 31605388 31605578 -69774943 + L1ME4a LINE L1 5582 5764 -357 2317 55 3 22 chr15 31605578 31605889 -69774632 + AluY SINE Alu 1 305 -6 405 283 84 50 chr15 31605889 31605908 -69774613 + L1ME4a LINE L1 5764 5781 -340 414 0 0 0 chr15 31605908 31605954 -69774567 + (TA)n Simple_repeat Simple_repeat 1 46 0 405 283 84 50 chr15 31605954 31606151 -69774370 + L1ME4a LINE L1 5781 6010 -111 240 291 31 47 chr15 31606624 31606751 -69773770 - MLT1L LTR MaLR -404 211 87 2312 117 16 19 chr15 31607198 31607574 -69772947 - THE1C LTR MaLR 0 375 1 351 292 110 26 chr15 31607668 31607822 -69772699 - MIR SINE MIR -73 189 23 192 188 0 83 chr15 31608331 31608379 -69772142 - MIR3 SINE MIR -3 205 162 245 106 0 21 chr15 31610115 31610162 -69770359 + (TC)n Simple_repeat Simple_repeat 1 46 0 2480 30 0 0 chr15 31612013 31612315 -69768206 - L1PA5 LINE L1 -3514 2632 2331 22433 37 0 2 chr15 31612315 31615839 -69764682 + L1PA5 LINE L1 2625 6150 -4 1063 222 69 121 chr15 31616884 31617465 -69763056 - L1ME3A LINE L1 0 6170 5620 1923 124 0 0 chr15 31618125 31618398 -69762123 - AluSc SINE Alu 0 309 37 382 173 0 25 chr15 31618470 31618551 -69761970 - MER53 DNA DNA -1 188 110 733 292 58 19 chr15 31619487 31619850 -69760671 + L1ME4a LINE L1 5520 5896 -225 413 259 18 22 chr15 31620393 31620575 -69759946 - L2 LINE L2 -1 3271 3017 23 0 0 0 chr15 31621038 31621061 -69759460 + AT_rich Low_complexity Low_complexity 1 23 0 201 219 31 0 chr15 31621232 31621296 -69759225 + (TA)n Simple_repeat Simple_repeat 2 67 0 223 340 151 0 chr15 31622384 31622490 -69758031 - L2 LINE L2 0 3272 3151 1650 165 38 14 chr15 31624664 31624955 -69755566 - AluJo SINE Alu -14 298 1 316 244 24 16 chr15 31625007 31625134 -69755387 + L1ME4a LINE L1 5741 5868 -253 291 238 106 13 chr15 31625183 31625334 -69755187 + L1ME4a LINE L1 5956 6120 -1 24 32 0 0 chr15 31629781 31629812 -69750709 + AT_rich Low_complexity Low_complexity 1 31 0 219 220 20 0 chr15 31629948 31629998 -69750523 - L2 LINE L2 0 3313 3263 2800 145 16 42 chr15 31629998 31630054 -69750467 - MER6A DNA MER2_type -382 483 427 2514 149 7 7 chr15 31630054 31630504 -69750017 - L1MA4 LINE L1 -3 6297 5848 2800 145 16 42 chr15 31630504 31630943 -69749578 - MER6A DNA MER2_type -438 427 1 7669 170 44 5 chr15 31631044 31632974 -69747547 - L1PA15-16 LINE L1 -3171 3678 1663 238 105 58 35 chr15 31632990 31633076 -69747445 + (TA)n Simple_repeat Simple_repeat 2 89 0 530 55 98 0 chr15 31633108 31633271 -69747250 + (CATAT)n Simple_repeat Simple_repeat 2 180 0 207 115 0 66 chr15 31633285 31633346 -69747175 + (TA)n Simple_repeat Simple_repeat 1 57 0 4779 217 25 4 chr15 31633346 31634260 -69746261 - L1PA15-16 LINE L1 -5203 1646 714 3103 231 28 2 chr15 31634272 31634879 -69745642 - L1PA15-16 LINE L1 -5586 1263 641 1930 202 18 30 chr15 31634875 31635366 -69745155 - L1P LINE L1 -833 5313 4829 * 1750 178 10 20 chr15 31635872 31636176 -69744345 - AluJb SINE Alu -11 301 1 2018 136 3 7 chr15 31636605 31636913 -69743608 - AluY SINE Alu -4 307 1 280 256 107 18 chr15 31639577 31639745 -69740776 + L1M4 LINE L1 4142 4324 -1822 433 203 68 79 chr15 31639912 31640089 -69740432 - MER104 DNA MER2_type -3 177 3 597 310 82 3 chr15 31640100 31640403 -69740118 + HAL1b LINE L1 295 621 -727 31 76 0 0 chr15 31640517 31640583 -69739938 + AT_rich Low_complexity Low_complexity 1 66 0 34 24 0 0 chr15 31640790 31640831 -69739690 + AT_rich Low_complexity Low_complexity 1 41 0 1896 45 4 8 chr15 31640981 31641225 -69739296 - LTR7 LTR ERV1 -207 243 1 2605 68 45 13 chr15 31641225 31641605 -69738916 - HERVH LTR ERV1 0 7713 7322 1388 124 18 5 chr15 31641603 31641820 -69738701 - HERVH LTR ERV1 -1894 5819 5600 * 4330 148 0 1 chr15 31641821 31642483 -69738038 - HERVH LTR ERV1 -2564 5149 4489 3421 103 2 6 chr15 31642486 31642990 -69737531 - HERVH LTR ERV1 -3720 3993 3492 924 135 20 0 chr15 31642980 31643128 -69737393 - HERVH LTR ERV1 -4423 3290 3140 * 16305 100 16 33 chr15 31643107 31646029 -69734492 - HERVH LTR ERV1 -4718 2995 373 520 323 83 0 chr15 31646671 31646888 -69733633 + MIR SINE MIR 4 238 -24 256 200 100 0 chr15 31647271 31647331 -69733190 + MLT1L LTR MaLR 12 77 -538 379 323 58 32 chr15 31647497 31647790 -69732731 + MLT1L LTR MaLR 279 610 -5 209 242 74 0 chr15 31647800 31647895 -69732626 + A-rich Low_complexity Low_complexity 2 103 0 1170 251 27 7 chr15 31648217 31648516 -69732005 - LTR40b LTR ERVL -157 305 1 613 239 73 27 chr15 31648862 31649121 -69731400 + L1ME LINE L1 5500 5770 -351 26 82 0 0 chr15 31649137 31649198 -69731323 + AT_rich Low_complexity Low_complexity 1 61 0 25 31 0 0 chr15 31652685 31652717 -69727804 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr15 31652738 31652759 -69727762 + AT_rich Low_complexity Low_complexity 1 21 0 228 377 102 34 chr15 31654276 31654716 -69725805 - L3b LINE CR1 -6 1577 1108 273 329 13 0 chr15 31654733 31654812 -69725709 + L2 LINE L2 3193 3272 0 422 211 10 0 chr15 31655965 31656069 -69724452 + GA-rich Low_complexity Low_complexity 1 105 0 223 283 0 0 chr15 31656315 31656375 -69724146 + (TA)n Simple_repeat Simple_repeat 2 61 0 279 79 0 0 chr15 31657365 31657403 -69723118 + (TG)n Simple_repeat Simple_repeat 2 39 0 22 0 0 0 chr15 31658573 31658595 -69721926 + AT_rich Low_complexity Low_complexity 1 22 0 1822 129 32 63 chr15 31659152 31659500 -69721021 - MER1B DNA MER1_type 0 337 1 318 278 30 96 chr15 31659979 31660209 -69720312 - L1MC4 LINE L1 -2 8040 7826 2890 241 68 58 chr15 31660252 31661297 -69719224 - L1ME2 LINE L1 -13 6085 5052 2055 113 3 56 chr15 31661297 31661617 -69718904 - AluSx SINE Alu -9 303 1 2890 241 68 58 chr15 31661617 31661889 -69718632 - L1ME2 LINE L1 -1046 5052 4784 579 29 0 0 chr15 31661889 31661958 -69718563 + (TA)n Simple_repeat Simple_repeat 2 70 0 2890 241 68 58 chr15 31661958 31662731 -69717790 - L1ME2 LINE L1 -1314 4784 3982 874 279 28 0 chr15 31662719 31663006 -69717515 - L1ME2 LINE L1 -3474 2606 2312 * 545 237 38 48 chr15 31663158 31663362 -69717159 + MLT1E1 LTR MaLR 51 304 -350 33 25 0 0 chr15 31663544 31663584 -69716937 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr15 31663655 31663684 -69716837 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 31663719 31663741 -69716780 + AT_rich Low_complexity Low_complexity 1 22 0 1671 264 56 47 chr15 31663762 31664570 -69715951 - L1ME2 LINE L1 -5207 863 49 311 243 0 0 chr15 31664578 31664648 -69715873 + LTR33 LTR ERVL 390 459 -62 541 338 49 52 chr15 31664713 31664916 -69715605 + L2 LINE L2 2936 3139 -174 1320 196 3 103 chr15 31664916 31665247 -69715274 - AluSx SINE Alu -3 299 2 541 338 49 52 chr15 31665247 31665410 -69715111 + L2 LINE L2 3139 3301 -12 981 304 19 4 chr15 31666774 31667031 -69713490 - MIR SINE MIR 0 262 2 229 188 0 21 chr15 31667368 31667416 -69713105 + MLT1L LTR MaLR 33 79 -536 26 0 0 0 chr15 31670242 31670268 -69710253 + AT_rich Low_complexity Low_complexity 1 26 0 2011 122 0 4 chr15 31670274 31670586 -69709935 + AluSx SINE Alu 7 317 0 24 0 0 0 chr15 31670629 31670653 -69709868 + AT_rich Low_complexity Low_complexity 1 24 0 288 253 51 0 chr15 31670941 31671020 -69709501 + MIR SINE MIR 72 154 -108 229 299 191 34 chr15 31671112 31671259 -69709262 + MIR SINE MIR 93 262 0 279 54 18 36 chr15 31671948 31672004 -69708517 + (CA)n Simple_repeat Simple_repeat 2 56 0 722 251 106 71 chr15 31672032 31672466 -69708055 + L1MC5 LINE L1 6661 7109 -852 1478 225 78 70 chr15 31672676 31673486 -69707035 - L1MEc LINE L1 -1379 4836 4021 3289 269 69 57 chr15 31673538 31674864 -69705657 - L1MEc LINE L1 -2465 3750 2441 2311 116 0 0 chr15 31674864 31675174 -69705347 + AluSx SINE Alu 1 310 -2 3289 269 69 57 chr15 31675174 31675995 -69704526 - L1MEc LINE L1 -3774 2441 1631 2736 103 0 26 chr15 31675995 31676424 -69704097 - L1MA3 LINE L1 0 6305 5888 3289 269 69 57 chr15 31676424 31678014 -69702507 - L1MEc LINE L1 -4584 1631 22 270 305 153 0 chr15 31678090 31678208 -69702313 - L2 LINE L2 -668 2646 2511 425 294 136 18 chr15 31678634 31678855 -69701666 - MIR SINE MIR -9 253 7 531 322 96 57 chr15 31679049 31679506 -69701015 + MLT1L LTR MaLR 4 478 -137 902 252 18 14 chr15 31679646 31679868 -69700653 - MER58A DNA MER1_type 0 224 2 207 243 14 40 chr15 31680192 31680266 -69700255 + (TAAA)n Simple_repeat Simple_repeat 1 72 0 2126 215 34 22 chr15 31680368 31680862 -69699659 + MLT1D LTR MaLR 6 505 0 21 0 0 0 chr15 31681958 31681979 -69698542 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr15 31682105 31682128 -69698393 + AT_rich Low_complexity Low_complexity 1 23 0 1571 137 0 9 chr15 31682690 31682917 -69697604 - AluJb SINE Alu -24 288 64 738 237 191 127 chr15 31683466 31684487 -69696034 - MER52A LTR ERV1 0 1755 670 2239 78 20 0 chr15 31685052 31685346 -69695175 - AluSg SINE Alu -10 300 1 288 0 0 0 chr15 31685567 31685599 -69694922 + (TG)n Simple_repeat Simple_repeat 2 33 0 191 244 90 39 chr15 31687339 31687417 -69693104 + L2 LINE L2 3150 3231 -82 3345 139 15 26 chr15 31688096 31688629 -69691892 + MER1A DNA MER1_type 1 527 0 1705 181 83 17 chr15 31690044 31690404 -69690117 - MLT1B LTR MaLR -6 384 1 207 282 77 94 chr15 31690492 31690609 -69689912 - L2 LINE L2 -3 3269 3155 4417 151 9 67 chr15 31690975 31691874 -69688647 - L1MC1 LINE L1 -140 6473 5627 2838 87 0 5 chr15 31691874 31692252 -69688269 + MLT2A1 LTR ERVL 1 376 -68 10732 217 37 20 chr15 31692256 31692282 -69688239 - L1MC1 LINE L1 -814 5612 5588 2157 125 0 3 chr15 31692282 31692578 -69687943 - AluSx SINE Alu -15 297 3 10732 217 37 20 chr15 31692578 31692958 -69687563 - L1MC1 LINE L1 -838 5588 5216 414 0 0 0 chr15 31692958 31693004 -69687517 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 10732 217 37 20 chr15 31693004 31696469 -69684052 - L1MC1 LINE L1 -1210 5216 1708 1502 135 0 4 chr15 31696468 31696698 -69683823 - L1MC1 LINE L1 -5422 1004 776 * 222 118 0 0 chr15 31696724 31696758 -69683763 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1479 222 151 65 chr15 31696758 31697262 -69683259 + L1MDa LINE L1 296 842 -5698 1025 242 58 4 chr15 31697254 31697531 -69682990 + L1MDa LINE L1 2894 3185 -3355 * 1539 150 93 42 chr15 31697553 31697907 -69682614 - THE1C LTR MaLR -3 372 1 335 250 33 11 chr15 31697909 31698001 -69682520 + L1MCc LINE L1 381 474 -5949 1563 300 53 30 chr15 31698089 31699449 -69681072 + L1MCc LINE L1 954 2546 -4576 29 78 0 0 chr15 31699514 31699578 -69680943 + AT_rich Low_complexity Low_complexity 1 64 0 887 263 37 21 chr15 31699683 31700063 -69680458 + L1MCc LINE L1 2614 2999 -4123 3387 238 99 4 chr15 31700097 31700855 -69679666 + MLT1A1-int LTR MaLR 906 1735 0 1283 175 130 39 chr15 31700855 31701186 -69679335 + MLT1A1 LTR MaLR 1 361 -4 2231 230 59 1 chr15 31701253 31701938 -69678583 + L1MCc LINE L1 3015 3718 -3223 277 284 52 60 chr15 31702137 31702271 -69678250 + MIR SINE MIR 124 256 -6 248 204 0 0 chr15 31703589 31703633 -69676888 - L2 LINE L2 0 3272 3229 429 153 46 84 chr15 31703658 31703916 -69676605 - MER33 DNA MER1_type -18 345 1 314 231 130 9 chr15 31703916 31704024 -69676497 - L2 LINE L2 -52 3261 3141 245 276 65 70 chr15 31704005 31704219 -69676302 + L2 LINE L2 2764 2976 -338 * 1760 157 11 0 chr15 31704265 31704574 -69675947 + AluJo SINE Alu 1 312 0 195 257 165 9 chr15 31704578 31704687 -69675834 - MIR SINE MIR -16 246 121 2319 90 3 0 chr15 31704738 31705048 -69675473 - AluY SINE Alu 0 311 1 246 341 11 0 chr15 31705093 31705181 -69675340 - L1ME LINE L1 -483 5638 5550 2258 116 0 0 chr15 31705236 31705539 -69674982 - AluSx SINE Alu -9 303 1 231 283 138 31 chr15 31706268 31706427 -69674094 + MIR3 SINE MIR 16 191 -17 21 0 0 0 chr15 31707304 31707325 -69673196 + AT_rich Low_complexity Low_complexity 1 21 0 301 311 233 16 chr15 31708230 31708423 -69672098 - MIR SINE MIR 0 262 28 475 293 14 7 chr15 31708626 31708766 -69671755 - MIR SINE MIR -5 257 117 23 33 0 0 chr15 31708841 31708871 -69671650 + AT_rich Low_complexity Low_complexity 1 30 0 2183 77 0 4 chr15 31708896 31709191 -69671330 + AluSq SINE Alu 14 307 0 425 240 60 43 chr15 31709311 31709481 -69671040 - LTR33 LTR ERVL -307 214 6 2437 50 0 3 chr15 31709549 31709847 -69670674 + AluY SINE Alu 2 298 -13 317 236 110 110 chr15 31710799 31710981 -69669540 + L1ME3A LINE L1 5504 5685 -485 263 328 10 26 chr15 31710998 31711190 -69669331 + L1ME3A LINE L1 5782 5970 -200 339 25 0 0 chr15 31711339 31711379 -69669142 + (CA)n Simple_repeat Simple_repeat 1 40 0 26 30 0 0 chr15 31711472 31711505 -69669016 + AT_rich Low_complexity Low_complexity 1 33 0 197 346 104 20 chr15 31762324 31762526 -69617995 + L2 LINE L2 2829 3047 -225 238 224 0 0 chr15 31762626 31762675 -69617846 + L2 LINE L2 3264 3312 -1 1754 149 47 10 chr15 31763422 31763723 -69616798 - AluJb SINE Alu 0 312 1 255 125 0 0 chr15 31763847 31763887 -69616634 + (CCTA)n Simple_repeat Simple_repeat 3 42 0 682 327 72 25 chr15 31763957 31764135 -69616386 + MLT1K LTR MaLR 111 279 -309 327 25 0 0 chr15 31764135 31764175 -69616346 + (TG)n Simple_repeat Simple_repeat 2 41 0 682 327 72 25 chr15 31764175 31764440 -69616081 + MLT1K LTR MaLR 279 575 -13 1028 184 0 0 chr15 31764445 31764608 -69615913 + FRAM SINE Alu 1 160 -16 2520 36 7 0 chr15 31766404 31766706 -69613815 + AluY SINE Alu 1 304 -7 23 0 0 0 chr15 31767072 31767095 -69613426 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 31767504 31767526 -69612995 + AT_rich Low_complexity Low_complexity 1 22 0 224 242 0 45 chr15 31768336 31768402 -69612119 + MIR SINE MIR 29 91 -171 206 194 0 0 chr15 31768404 31768440 -69612081 - MIR SINE MIR -60 148 113 195 42 0 0 chr15 31769413 31769437 -69611084 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 776 205 0 0 chr15 31769466 31769593 -69610928 - FAM SINE Alu -41 144 18 233 56 0 28 chr15 31769602 31769638 -69610883 + (TTG)n Simple_repeat Simple_repeat 2 36 0 635 171 41 7 chr15 31769809 31769955 -69610566 + L1MC4a LINE L1 7070 7220 -588 261 0 0 0 chr15 31770055 31770084 -69610437 + (TTATA)n Simple_repeat Simple_repeat 1 29 0 2242 97 7 3 chr15 31771511 31771820 -69608701 + AluY SINE Alu 1 310 -1 284 291 236 0 chr15 31772261 31772371 -69608150 - MIR SINE MIR -33 229 94 604 227 39 7 chr15 31773007 31773161 -69607360 + MER63A DNA MER1_type 52 210 0 633 258 18 109 chr15 31773172 31773502 -69607019 + MER102b DNA MER1_type 33 332 -9 185 309 124 31 chr15 31773529 31773626 -69606895 + MIR3 SINE MIR 64 169 -39 2331 79 3 0 chr15 31774282 31774574 -69605947 - AluSp SINE Alu -20 293 1 187 256 73 24 chr15 31774605 31774687 -69605834 + L2 LINE L2 2272 2357 -957 306 242 0 66 chr15 31775177 31775268 -69605253 - L1ME2 LINE L1 -1 6163 6079 265 358 138 31 chr15 31775759 31776273 -69604248 - L2 LINE L2 -511 2803 2235 488 323 88 18 chr15 31776296 31776513 -69604008 + LTR33 LTR ERVL 37 268 -253 528 194 105 0 chr15 31776597 31776721 -69603800 + LTR33 LTR ERVL 382 518 -3 203 299 165 29 chr15 31777076 31777427 -69603094 - L2 LINE L2 -1307 2007 1609 1567 197 32 46 chr15 31777434 31777665 -69602856 - MLT1A1 LTR MaLR 0 365 139 2153 142 132 5 chr15 31777665 31778045 -69602476 - MSTA LTR MaLR 0 428 1 1567 197 32 46 chr15 31778045 31778183 -69602338 - MLT1A1 LTR MaLR -226 139 1 2259 119 47 11 chr15 31778415 31778777 -69601744 - THE1C LTR MaLR 0 375 1 5184 117 19 7 chr15 31778777 31779528 -69600993 - THE1C-int LTR MaLR 0 1580 821 791 163 129 0 chr15 31779628 31779775 -69600746 + AluSc SINE Alu 130 295 -14 537 318 69 19 chr15 31779778 31780039 -69600482 - L2 LINE L2 -810 2504 2231 2201 96 4 0 chr15 31780046 31780353 -69600168 - AluSg SINE Alu 0 308 1 629 98 0 0 chr15 31780546 31780638 -69599883 + AluSc SINE Alu 173 264 -45 1348 91 23 0 chr15 31781659 31781835 -69598686 + AluSc SINE Alu 97 276 -33 1106 118 11 0 chr15 31781836 31781923 -69598598 + (GAAA)n Simple_repeat Simple_repeat 1 267 0 1106 118 11 0 chr15 31781923 31782101 -69598420 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2596 139 31 2 chr15 31782417 31782833 -69597688 - MSTA LTR MaLR 0 428 1 358 303 134 0 chr15 31783039 31783158 -69597363 - MIR SINE MIR -33 229 95 413 304 58 12 chr15 31783354 31783525 -69596996 + MIR SINE MIR 27 205 -57 2144 102 27 3 chr15 31783636 31783929 -69596592 - AluSg SINE Alu -10 300 1 841 279 126 17 chr15 31784664 31784969 -69595552 + MLT1J2 LTR MaLR 5 333 -113 231 36 0 0 chr15 31785468 31785496 -69595025 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 27 0 0 0 chr15 31785778 31785805 -69594716 + AT_rich Low_complexity Low_complexity 1 27 0 198 171 0 0 chr15 31786921 31786962 -69593559 + (CA)n Simple_repeat Simple_repeat 1 41 0 646 268 114 15 chr15 31789533 31789805 -69590716 + L1MC4a LINE L1 5613 5911 -1897 2156 113 6 16 chr15 31790765 31791076 -69589445 + AluSg SINE Alu 1 308 -2 1914 131 38 0 chr15 31791092 31791382 -69589139 + AluSx SINE Alu 1 301 -11 192 314 128 69 chr15 31791773 31791875 -69588646 + L2 LINE L2 3134 3241 -31 2313 109 3 0 chr15 31791879 31792181 -69588340 - AluSx SINE Alu -9 303 1 373 219 0 0 chr15 31792287 31792351 -69588170 + L2 LINE L2 3243 3306 -7 198 171 0 0 chr15 31792357 31792398 -69588123 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 1274 189 60 0 chr15 31794307 31794609 -69585912 - MER33 DNA MER1_type -4 320 1 185 360 9 27 chr15 31795348 31795459 -69585062 - MIR SINE MIR -79 183 75 525 296 102 22 chr15 31797031 31797257 -69583264 - MIR SINE MIR -2 260 17 2303 64 28 0 chr15 31798905 31799188 -69581333 - AluY SINE Alu -20 291 1 23 0 0 0 chr15 31799661 31799684 -69580837 + AT_rich Low_complexity Low_complexity 1 23 0 192 328 16 0 chr15 31801773 31801837 -69578684 + MIR SINE MIR 175 239 -23 269 333 175 0 chr15 31801913 31802027 -69578494 + L2 LINE L2 3139 3272 0 2146 193 2 2 chr15 31806441 31806860 -69573661 + L1MB8 LINE L1 5291 5709 -475 842 166 12 12 chr15 31806862 31807031 -69573490 + L1MB8 LINE L1 6009 6177 -1 191 320 78 58 chr15 31807629 31807732 -69572789 - MIR SINE MIR -123 139 35 291 374 17 4 chr15 31808156 31808286 -69572235 + HAL1 LINE L1 810 946 -1561 1780 183 0 7 chr15 31808286 31808587 -69571934 - AluJb SINE Alu -13 299 1 291 374 17 4 chr15 31808587 31808686 -69571835 + HAL1 LINE L1 946 1042 -1465 316 277 100 70 chr15 31808688 31808988 -69571533 + L1MEd LINE L1 993 1301 -1206 180 125 0 0 chr15 31808998 31809030 -69571491 + (A)n Simple_repeat Simple_repeat 1 32 0 2052 113 10 13 chr15 31809054 31809356 -69571165 + AluSq SINE Alu 12 312 -1 301 286 141 72 chr15 31809394 31809656 -69570865 + HAL1 LINE L1 1521 1800 -707 24 0 0 0 chr15 31809825 31809849 -69570672 + AT_rich Low_complexity Low_complexity 1 24 0 242 281 31 10 chr15 31810346 31810442 -69570079 + L1ME4a LINE L1 5981 6078 -43 27 0 0 0 chr15 31810527 31810554 -69569967 + AT_rich Low_complexity Low_complexity 1 27 0 288 23 0 23 chr15 31811257 31811301 -69569220 + L1PA5 LINE L1 6112 6154 0 377 278 94 63 chr15 31812349 31812572 -69567949 + MIR SINE MIR 2 231 -31 514 202 11 0 chr15 31815807 31815901 -69564620 + FLAM_A SINE Alu 2 96 -46 217 284 83 28 chr15 31815920 31816029 -69564492 - MIR SINE MIR 0 262 148 367 301 48 0 chr15 31816493 31816596 -69563925 - L2 LINE L2 -1 3312 3205 180 333 107 0 chr15 31816730 31816805 -69563716 - L2 LINE L2 -205 3067 2985 365 308 164 13 chr15 31816809 31816968 -69563553 + MER5A DNA MER1_type 7 189 0 738 299 211 16 chr15 31816991 31817603 -69562918 - L2 LINE L2 -354 2960 2230 2054 119 32 66 chr15 31819354 31819731 -69560790 - THE1B LTR MaLR 0 364 1 2232 99 0 7 chr15 31823956 31824250 -69556271 + AluSx SINE Alu 1 292 -20 21 36 0 0 chr15 31825216 31825244 -69555277 + AT_rich Low_complexity Low_complexity 1 28 0 898 238 31 39 chr15 31825463 31825749 -69554772 + L3b LINE CR1 1108 1391 -192 22 35 0 0 chr15 31826056 31826085 -69554436 + AT_rich Low_complexity Low_complexity 1 29 0 3732 126 70 3 chr15 31827601 31828226 -69552295 - THE1C-int LTR MaLR -912 668 2 1918 150 50 17 chr15 31828247 31828608 -69551913 - THE1C LTR MaLR -2 373 1 731 290 28 48 chr15 31829441 31829689 -69550832 + MIR SINE MIR 2 244 -18 1716 116 93 4 chr15 31829702 31830024 -69550497 - AluSg SINE Alu 0 345 1 263 262 122 28 chr15 31830236 31830343 -69550178 - MIR SINE MIR -132 130 14 22 35 0 0 chr15 31831012 31831041 -69549480 + AT_rich Low_complexity Low_complexity 1 29 0 668 238 12 42 chr15 31831417 31831585 -69548936 + MER63A DNA MER1_type 46 208 -2 390 308 122 35 chr15 31831616 31831788 -69548733 + MIR SINE MIR 47 233 -29 1431 183 3 7 chr15 31831811 31832100 -69548421 - L1MB7 LINE L1 -192 6490 6203 338 98 66 16 chr15 31832098 31832159 -69548362 + L1M4 LINE L1 4530 4593 -1553 * 357 208 0 0 chr15 31832174 31832246 -69548275 + L1M4 LINE L1 4829 4900 -1246 769 154 45 224 chr15 31832250 31832587 -69547934 - L1MB7 LINE L1 -627 6045 5650 1947 108 25 4 chr15 31832587 31832912 -69547609 - AluSq SINE Alu 0 331 1 769 154 45 224 chr15 31832912 31833213 -69547308 - L1MB7 LINE L1 -1022 5650 5297 523 86 0 0 chr15 31833213 31833283 -69547238 + AluS SINE Alu 1 70 -243 769 154 45 224 chr15 31833283 31833520 -69547001 - L1MB7 LINE L1 -1375 5297 5357 2168 117 7 0 chr15 31833520 31833818 -69546703 + AluSx SINE Alu 1 300 -12 769 154 45 224 chr15 31833818 31833844 -69546677 - L1MB7 LINE L1 -1314 5358 5329 3775 219 129 26 chr15 31833861 31834723 -69545798 - L1MB7 LINE L1 -1553 5091 4318 2213 100 0 30 chr15 31834723 31835024 -69545497 + AluSx SINE Alu 1 292 -20 3775 219 129 26 chr15 31835024 31835708 -69544813 - L1MB7 LINE L1 -2326 4318 3387 360 268 45 9 chr15 31835726 31835838 -69544683 - L1MB7 LINE L1 -6064 478 363 409 344 58 36 chr15 31836017 31836241 -69544280 + MIR SINE MIR 28 256 -6 282 361 52 16 chr15 31836406 31836597 -69543924 + MIR SINE MIR 2 199 -63 191 342 27 45 chr15 31836954 31837065 -69543456 - MIR SINE MIR -78 130 22 452 271 49 49 chr15 31837316 31837519 -69543002 - MLT1L LTR MaLR -60 555 353 2220 92 0 7 chr15 31840270 31840606 -69539915 - AluY SINE Alu 0 311 1 235 246 33 33 chr15 31840679 31840740 -69539781 - MIR SINE MIR -78 130 70 424 265 151 22 chr15 31841375 31841560 -69538961 - MIR SINE MIR 0 262 54 3334 154 62 34 chr15 31842388 31842987 -69537534 + MER39 LTR ERV1 1 623 -84 2083 146 34 17 chr15 31842987 31843344 -69537177 + THE1B LTR MaLR 1 363 -1 3334 154 62 34 chr15 31843344 31843427 -69537094 + MER39 LTR ERV1 623 702 -5 224 228 0 0 chr15 31843659 31843716 -69536805 + A-rich Low_complexity Low_complexity 3 59 0 233 313 46 30 chr15 31843851 31843982 -69536539 + L2 LINE L2 3179 3311 -2 266 246 0 15 chr15 31845417 31845482 -69535039 - MIR SINE MIR 0 262 199 21 0 0 0 chr15 31846329 31846350 -69534171 + AT_rich Low_complexity Low_complexity 1 21 0 834 326 78 49 chr15 31847127 31847835 -69532686 + L2 LINE L2 2365 3093 -179 1012 192 25 20 chr15 31847905 31848125 -69532396 + AluJo SINE Alu 85 305 0 1229 186 30 4 chr15 31848383 31848614 -69531907 + AluJo SINE Alu 67 303 -9 364 289 96 0 chr15 31848998 31849154 -69531367 + LTR33A LTR ERVL 226 396 -127 1955 143 0 0 chr15 31850669 31850949 -69529572 + AluSx SINE Alu 5 284 -28 24 53 0 0 chr15 31851193 31851231 -69529290 + AT_rich Low_complexity Low_complexity 1 38 0 2167 94 4 0 chr15 31851255 31851531 -69528990 + AluSp SINE Alu 17 293 -20 396 0 0 0 chr15 31851580 31851624 -69528897 + (CA)n Simple_repeat Simple_repeat 1 44 0 225 0 0 0 chr15 31851623 31851648 -69528873 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 311 0 0 25 chr15 31852607 31852647 -69527874 + (CA)n Simple_repeat Simple_repeat 2 40 0 2228 100 0 0 chr15 31853704 31854011 -69526510 + AluSg SINE Alu 1 307 0 189 268 0 0 chr15 31854105 31854146 -69526375 + MIR SINE MIR 108 148 -60 256 248 149 41 chr15 31854181 31854302 -69526219 - MIR SINE MIR -124 138 5 572 169 71 49 chr15 31854367 31854550 -69525971 - MER53 DNA DNA -2 187 1 278 298 106 0 chr15 31854645 31854749 -69525772 - MIR3 SINE MIR -9 199 85 2513 56 0 0 chr15 31854753 31855059 -69525462 - AluY SINE Alu -4 307 2 192 345 0 0 chr15 31855264 31855319 -69525202 + L2 LINE L2 3249 3303 -10 2043 121 10 0 chr15 31855669 31855959 -69524562 - AluSx SINE Alu -19 293 1 395 207 95 113 chr15 31856531 31856753 -69523768 - LTR16B LTR ERVL -2 462 245 26 0 0 0 chr15 31856866 31856892 -69523629 + AT_rich Low_complexity Low_complexity 1 26 0 1356 194 35 7 chr15 31857165 31857448 -69523073 + MLT1A1 LTR MaLR 72 362 -3 1428 218 65 56 chr15 31857462 31857984 -69522537 + L1ME3A LINE L1 5568 6094 -76 21 36 0 0 chr15 31858143 31858171 -69522350 + AT_rich Low_complexity Low_complexity 1 28 0 1096 219 23 0 chr15 31858205 31858424 -69522097 - 7SLRNA srpRNA srpRNA -96 224 1 329 245 119 95 chr15 31858447 31858475 -69522046 - L1MC4 LINE L1 -140 7902 7876 225 0 0 0 chr15 31858475 31858500 -69522021 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 2260 45 7 21 chr15 31858504 31858795 -69521726 - AluY SINE Alu -24 287 1 329 245 119 95 chr15 31858795 31859055 -69521466 - L1MC4 LINE L1 -168 7874 7602 475 248 34 0 chr15 31859093 31859210 -69521311 + L2 LINE L2 3193 3313 0 2362 104 0 0 chr15 31859240 31859549 -69520972 - AluSg SINE Alu 0 310 2 374 295 93 54 chr15 31860681 31860939 -69519582 + L1ME4a LINE L1 5791 6058 -63 190 321 0 0 chr15 31861060 31861116 -69519405 + MIR SINE MIR 106 161 -101 22 35 0 0 chr15 31861185 31861214 -69519307 + AT_rich Low_complexity Low_complexity 1 29 0 2377 100 0 0 chr15 31861336 31861637 -69518884 - AluSx SINE Alu -11 301 1 2256 94 34 0 chr15 31862273 31862571 -69517950 + AluSx SINE Alu 1 308 -4 948 252 110 0 chr15 31862817 31863107 -69517414 + MER5C DNA MER1_type 1 322 -2 329 316 13 33 chr15 31863154 31863306 -69517215 + MIR SINE MIR 112 260 -2 221 83 28 0 chr15 31863971 31864007 -69516514 + (CAATA)n Simple_repeat Simple_repeat 4 40 0 647 286 67 13 chr15 31864008 31864232 -69516289 + MIR SINE MIR 21 256 -6 222 324 141 22 chr15 31864441 31864626 -69515895 + L2 LINE L2 2836 3042 -230 975 76 0 0 chr15 31865382 31865513 -69515008 + L1PA8A LINE L1 5974 6104 -27 189 0 0 0 chr15 31865513 31865534 -69514987 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 634 277 52 56 chr15 31866026 31866257 -69514264 + MIR SINE MIR 13 242 -20 238 125 25 0 chr15 31866294 31866334 -69514187 + HSMAR1 DNA Mariner 1247 1287 0 1725 167 0 4 chr15 31866418 31866699 -69513822 + AluJo SINE Alu 3 282 -30 198 319 198 0 chr15 31866744 31866835 -69513686 - MIR SINE MIR -122 140 32 215 170 64 0 chr15 31867054 31867101 -69513420 - L2 LINE L2 -2 3311 3262 2604 20 7 0 chr15 31867161 31867456 -69513065 - AluY SINE Alu -14 297 1 206 276 86 0 chr15 31869039 31869097 -69511424 - MIR3 SINE MIR -30 178 116 221 236 0 36 chr15 31869694 31869749 -69510772 + T-rich Low_complexity Low_complexity 3 55 0 899 112 0 22 chr15 31869997 31870131 -69510390 + AluJo/FLAM SINE Alu 1 131 -171 299 162 0 108 chr15 31870131 31870205 -69510316 + AluSc SINE Alu 132 197 -102 3836 177 58 21 chr15 31870222 31871096 -69509425 - Charlie1a DNA MER1_type -547 908 2 461 306 103 53 chr15 31871305 31871740 -69508781 - L1M4 LINE L1 -747 5399 4943 275 308 19 19 chr15 31871832 31871939 -69508582 + MIR3 SINE MIR 97 203 -5 2079 119 73 24 chr15 31871963 31872136 -69508385 - MER6 DNA MER2_type 0 865 702 2387 88 0 0 chr15 31872136 31872443 -69508078 + AluY SINE Alu 1 307 -4 2079 119 73 24 chr15 31872443 31872639 -69507882 - MER6 DNA MER2_type -163 702 478 1188 194 0 9 chr15 31872639 31872856 -69507665 + AluJo SINE Alu 87 301 -11 662 125 18 0 chr15 31872857 31872969 -69507552 - MER6 DNA MER2_type -380 485 372 231 114 0 0 chr15 31872969 31873004 -69507517 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 216 259 37 0 chr15 31873277 31873331 -69507190 - MIR3 SINE MIR -2 206 151 * 326 278 105 80 chr15 31873321 31873513 -69507008 + L2 LINE L2 2423 2628 -686 1569 199 36 9 chr15 31873513 31873845 -69506676 + MER58B DNA MER1_type 1 341 0 326 278 105 80 chr15 31873845 31873965 -69506556 + L2 LINE L2 2628 2743 -571 657 153 8 0 chr15 31873975 31874093 -69506428 + Charlie5 DNA MER1_type 5 123 -2489 1414 182 46 32 chr15 31874100 31874473 -69506048 + Charlie5 DNA MER1_type 2243 2620 0 398 293 190 57 chr15 31874481 31874976 -69505545 + L2 LINE L2 2742 3298 -15 299 248 219 19 chr15 31874986 31875091 -69505430 - MIR SINE MIR -60 148 23 22 35 0 0 chr15 31876251 31876280 -69504241 + AT_rich Low_complexity Low_complexity 1 29 0 1023 176 73 30 chr15 31876312 31876545 -69503976 - MIR SINE MIR -2 260 18 388 245 108 0 chr15 31876683 31876785 -69503736 - MER91A DNA MER1_type -27 169 57 2306 136 53 5 chr15 31878097 31878494 -69502027 - L1PA16 LINE L1 -28 6138 5723 220 136 51 0 chr15 31879541 31879600 -69500921 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 713 170 27 112 chr15 31879641 31879864 -69500657 - MLT1D LTR MaLR -301 204 1 345 100 0 0 chr15 31881075 31881125 -69499396 + (CA)n Simple_repeat Simple_repeat 1 50 0 2074 135 0 0 chr15 31881284 31881580 -69498941 - AluSx SINE Alu -16 296 1 2614 45 0 3 chr15 31883905 31884217 -69496304 + AluY SINE Alu 1 311 0 410 314 30 18 chr15 31884442 31884611 -69495910 - MER5B DNA MER1_type 0 178 8 25 51 0 0 chr15 31884704 31884743 -69495778 + AT_rich Low_complexity Low_complexity 1 39 0 14110 202 29 14 chr15 31884748 31887395 -69493126 - L1PB3 LINE L1 -2 6868 4076 2156 125 3 0 chr15 31887395 31887684 -69492837 - AluSg SINE Alu -20 290 1 14110 202 29 14 chr15 31887684 31889568 -69490953 - L1PB3 LINE L1 -2794 4076 2221 22 35 0 0 chr15 31890598 31890627 -69489894 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr15 31890678 31890699 -69489822 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr15 31892605 31892628 -69487893 + AT_rich Low_complexity Low_complexity 1 23 0 296 368 18 18 chr15 31895350 31895464 -69485057 - L2 LINE L2 0 3272 3159 612 266 117 5 chr15 31895719 31895901 -69484620 + MIR SINE MIR 48 250 -12 344 327 0 0 chr15 31895901 31896002 -69484519 + MER5B DNA MER1_type 3 103 -75 33 56 0 0 chr15 31896039 31896093 -69484428 + AT_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr15 31897624 31897646 -69482875 + AT_rich Low_complexity Low_complexity 1 22 0 264 313 0 0 chr15 31898503 31898570 -69481951 + CT-rich Low_complexity Low_complexity 6 72 0 211 296 0 0 chr15 31898830 31898884 -69481637 + L2 LINE L2 3006 3059 -254 1258 276 75 41 chr15 31899071 31899625 -69480896 + MLT1F1 LTR MaLR 1 567 0 193 82 41 41 chr15 31900485 31900534 -69479987 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 25 65 0 0 chr15 31901492 31901538 -69478983 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr15 31901920 31901949 -69478572 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 31901984 31902006 -69478515 + AT_rich Low_complexity Low_complexity 1 22 0 205 369 18 0 chr15 31902181 31902292 -69478229 + L2 LINE L2 2249 2361 -953 2127 48 0 0 chr15 31902310 31902562 -69477959 - AluY SINE Alu -26 285 34 960 216 5 0 chr15 31902710 31902895 -69477626 - MER5A DNA MER1_type 0 189 4 2339 81 16 3 chr15 31903683 31903990 -69476531 + AluSp SINE Alu 1 311 -2 289 287 13 33 chr15 31904859 31905009 -69475512 + CT-rich Low_complexity Low_complexity 2 148 0 6951 142 31 6 chr15 31905384 31906562 -69473959 - Tigger3b DNA MER2_type 0 1231 25 21 0 0 0 chr15 31906597 31906618 -69473903 + AT_rich Low_complexity Low_complexity 1 21 0 2193 110 7 3 chr15 31906624 31906923 -69473598 - AluSx SINE Alu -11 301 2 252 350 60 17 chr15 31907233 31907350 -69473171 - MIR SINE MIR -66 142 21 1981 169 19 22 chr15 31907653 31907787 -69472734 + MLT1A1 LTR MaLR 1 134 -231 2809 80 3 11 chr15 31907787 31908164 -69472357 + THE1C LTR MaLR 2 375 0 1981 169 19 22 chr15 31908164 31908395 -69472126 + MLT1A1 LTR MaLR 134 365 0 316 218 82 9 chr15 31908597 31908707 -69471814 + L1MC4 LINE L1 7894 8011 -31 205 305 17 0 chr15 31909215 31909274 -69471247 + L2 LINE L2 3211 3270 -2 2230 96 7 0 chr15 31909650 31909943 -69470578 + AluSg SINE Alu 1 295 -15 899 164 7 13 chr15 31909955 31910107 -69470414 + FRAM SINE Alu 8 158 -18 313 259 254 9 chr15 31910282 31910477 -69470044 + MIR SINE MIR 8 259 -3 294 73 0 0 chr15 31911380 31911421 -69469100 + (TCCA)n Simple_repeat Simple_repeat 4 44 0 593 347 47 11 chr15 31911790 31912064 -69468457 + L3 LINE CR1 475 758 -819 231 88 0 0 chr15 31912086 31912120 -69468401 + (CA)n Simple_repeat Simple_repeat 1 34 0 38 39 0 0 chr15 31912410 31912462 -69468059 + AT_rich Low_complexity Low_complexity 1 52 0 254 262 0 0 chr15 31912586 31912647 -69467874 - MIR SINE MIR -66 196 136 219 69 0 0 chr15 31912830 31912859 -69467662 + (CA)n Simple_repeat Simple_repeat 2 30 0 2057 140 13 0 chr15 31912928 31913236 -69467285 + AluJo SINE Alu 1 312 0 306 333 188 27 chr15 31913244 31913505 -69467016 + L3 LINE CR1 1264 1566 -11 181 336 65 28 chr15 31914180 31914287 -69466234 - L2 LINE L2 -5 3267 3157 249 333 34 8 chr15 31914560 31914677 -69465844 - MIR3 SINE MIR -13 195 76 204 254 70 79 chr15 31915229 31915343 -69465178 - MIR SINE MIR -45 217 105 200 196 54 0 chr15 31915903 31915959 -69464562 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 772 207 0 27 chr15 31916291 31916441 -69464080 - FRAM SINE Alu -18 158 13 21 36 0 0 chr15 31916451 31916479 -69464042 + AT_rich Low_complexity Low_complexity 1 28 0 1935 129 7 34 chr15 31916490 31916641 -69463880 - AluSx SINE Alu -26 286 145 2832 7 0 0 chr15 31916641 31916946 -69463575 - AluY SINE Alu -6 305 1 1935 129 7 34 chr15 31916946 31917088 -69463433 - AluSx SINE Alu -167 145 1 769 144 32 0 chr15 31917108 31917233 -69463288 - FLAM_C SINE Alu -4 129 1 399 363 29 37 chr15 31917560 31917805 -69462716 + MIR SINE MIR 20 262 0 377 276 81 16 chr15 31918146 31918269 -69462252 - MIR SINE MIR -111 151 21 447 261 42 7 chr15 31918287 31918403 -69462118 + MIR SINE MIR 14 130 -78 2582 34 0 43 chr15 31918466 31918789 -69461732 - AluY SINE Alu 0 311 3 754 269 96 34 chr15 31918883 31919206 -69461315 + LTR16C LTR ERVL 149 491 0 457 284 133 15 chr15 31919719 31919983 -69460538 - L1ME4a LINE L1 0 6121 5827 291 303 162 0 chr15 31920077 31920219 -69460302 - L1ME4a LINE L1 -437 5684 5520 361 239 123 8 chr15 31922186 31922316 -69458205 + MIR SINE MIR 3 147 -115 406 318 54 50 chr15 31922389 31922628 -69457893 - MIR SINE MIR -12 250 11 195 388 11 56 chr15 31922703 31922881 -69457640 - MIR SINE MIR -86 176 7 4435 186 15 2 chr15 31923404 31924645 -69455876 + L1PBb LINE L1 253 1509 -4695 23 0 0 0 chr15 31925992 31926015 -69454506 + AT_rich Low_complexity Low_complexity 1 23 0 210 150 0 0 chr15 31926149 31926189 -69454332 + (A)n Simple_repeat Simple_repeat 1 40 0 1810 159 0 3 chr15 31927374 31927664 -69452857 - AluJo SINE Alu -23 289 1 204 228 0 0 chr15 31928034 31928091 -69452430 + CT-rich Low_complexity Low_complexity 4 60 0 258 56 0 0 chr15 31928179 31928215 -69452306 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr15 31928601 31928623 -69451898 + AT_rich Low_complexity Low_complexity 1 22 0 275 246 71 40 chr15 31932225 31932313 -69448208 - MARNA DNA Mariner -330 256 161 2197 62 13 52 chr15 31932313 31932619 -69447902 + AluY SINE Alu 1 294 -17 275 246 71 40 chr15 31932619 31932656 -69447865 - MARNA DNA Mariner -425 161 127 22 0 0 0 chr15 31933897 31933919 -69446602 + AT_rich Low_complexity Low_complexity 1 22 0 477 0 0 0 chr15 31934041 31934094 -69446427 + (CA)n Simple_repeat Simple_repeat 2 54 0 24 0 0 0 chr15 31935808 31935832 -69444689 + AT_rich Low_complexity Low_complexity 1 24 0 180 111 0 0 chr15 31937211 31937238 -69443283 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 3782 177 59 9 chr15 31937337 31938278 -69442243 - L1MB7 LINE L1 -17 6167 5176 387 0 0 0 chr15 31938613 31938656 -69441865 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1534 180 0 24 chr15 31938657 31938952 -69441569 - AluJb SINE Alu -24 288 1 536 125 0 45 chr15 31939116 31939204 -69441317 + AluJ/FLAM SINE Alu 1 84 -228 262 299 43 43 chr15 31939337 31939454 -69441067 + MIR SINE MIR 29 145 -63 202 239 75 60 chr15 31940986 31941053 -69439468 + L2 LINE L2 3246 3313 0 340 298 74 54 chr15 31941661 31941919 -69438602 + MLT1J LTR MaLR 3 265 -246 22 0 0 0 chr15 31944784 31944806 -69435715 + AT_rich Low_complexity Low_complexity 1 22 0 2211 95 3 0 chr15 31945907 31946191 -69434330 - AluSp SINE Alu -1 312 28 2110 109 0 43 chr15 31946269 31946571 -69433950 + AluSg SINE Alu 1 289 -21 408 40 0 0 chr15 31949107 31949157 -69431364 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 2469 68 0 0 chr15 31949699 31950010 -69430511 + AluY SINE Alu 1 311 0 23 0 0 0 chr15 31950400 31950423 -69430098 + AT_rich Low_complexity Low_complexity 1 23 0 29 47 0 0 chr15 31953005 31953048 -69427473 + AT_rich Low_complexity Low_complexity 1 43 0 304 363 18 12 chr15 31953265 31953433 -69427088 + LTR67 LTR ERVL 380 548 -9 311 293 182 0 chr15 31953486 31953585 -69426936 + MIR SINE MIR 13 129 -133 2462 70 0 13 chr15 31954625 31954925 -69425596 + AluY SINE Alu 1 296 -15 477 114 0 0 chr15 31955428 31955498 -69425023 - MLT1A2 LTR MaLR 0 374 305 39 88 0 0 chr15 31955697 31955799 -69424722 + AT_rich Low_complexity Low_complexity 1 102 0 22 0 0 0 chr15 31957569 31957591 -69422930 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 31957664 31957686 -69422835 + AT_rich Low_complexity Low_complexity 1 22 0 1353 233 89 33 chr15 31957689 31958140 -69422381 - L1ME1 LINE L1 -21 6145 5670 473 219 30 48 chr15 31958154 31958353 -69422168 + MLT1D-int LTR MaLR 1233 1370 -1 1862 212 30 38 chr15 31958355 31958859 -69421662 + MLT1D LTR MaLR 2 501 -4 272 311 87 0 chr15 31960018 31960121 -69420400 - MIR3 SINE MIR -5 203 92 2184 164 37 39 chr15 31960242 31960674 -69419847 - MSTB1 LTR MaLR 0 432 2 3091 153 30 73 chr15 31960871 31961475 -69419046 - L1MB7 LINE L1 0 6184 5614 1817 170 0 14 chr15 31961475 31961764 -69418757 - AluJo SINE Alu -27 285 1 3091 153 30 73 chr15 31961764 31961872 -69418649 - L1MB7 LINE L1 -570 5614 5503 1061 222 109 6 chr15 31961889 31962209 -69418312 + LTR48 LTR ERV1 106 458 -329 424 170 98 9 chr15 31962207 31962319 -69418202 + LTR48 LTR ERV1 618 739 -48 * 198 250 0 39 chr15 31962669 31962721 -69417800 - MIR3 SINE MIR -21 187 138 541 289 90 78 chr15 31963175 31963383 -69417138 - L1M4 LINE L1 -1411 4735 4531 1896 154 24 3 chr15 31963383 31963681 -69416840 - AluSx SINE Alu -8 304 1 541 289 90 78 chr15 31963681 31963778 -69416743 - L1M4 LINE L1 -1615 4531 4437 1928 129 20 3 chr15 31963778 31964072 -69416449 + AluSc SINE Alu 1 299 -10 541 289 90 78 chr15 31964072 31964342 -69416179 - L1M4 LINE L1 -1709 4437 4152 343 303 91 24 chr15 31964443 31964608 -69415913 - L1M4 LINE L1 -3171 2975 2800 1349 217 0 8 chr15 31964957 31965197 -69415324 - MER8 DNA MER2_type 0 239 2 486 296 88 32 chr15 31965248 31965745 -69414776 + L1ME3A LINE L1 818 1342 -4863 2434 87 0 0 chr15 31965900 31966209 -69414312 + AluY SINE Alu 1 309 -2 323 335 25 58 chr15 31966299 31966577 -69413944 + L1ME3A LINE L1 1877 2145 -4251 250 271 0 0 chr15 31966628 31966698 -69413823 + L1ME3A LINE L1 2179 2248 -3967 * 983 252 133 2 chr15 31966681 31967101 -69413420 + L1ME3A LINE L1 4818 5292 -923 909 260 138 10 chr15 31967104 31967511 -69413010 + L1ME3A LINE L1 5569 6027 -204 317 271 165 30 chr15 31967586 31967719 -69412802 + L1ME3A LINE L1 6057 6207 -32 21 0 0 0 chr15 31967728 31967749 -69412772 + AT_rich Low_complexity Low_complexity 1 21 0 184 220 40 20 chr15 31968363 31968413 -69412108 + MIR SINE MIR 79 129 -133 598 275 39 11 chr15 31968545 31968723 -69411798 + MIR SINE MIR 7 189 -73 1055 208 29 70 chr15 31968830 31968953 -69411568 - MER2 DNA MER2_type -7 338 211 1995 88 66 0 chr15 31968953 31969225 -69411296 + AluSx SINE Alu 1 290 -22 1055 208 29 70 chr15 31969225 31969443 -69411078 - MER2 DNA MER2_type -134 211 11 506 250 56 28 chr15 31970867 31971047 -69409474 - MLT1L LTR MaLR -72 543 359 342 0 0 0 chr15 31975124 31975162 -69405359 + (TG)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr15 31975542 31975563 -69404958 + AT_rich Low_complexity Low_complexity 1 21 0 228 86 0 0 chr15 31976044 31976079 -69404442 + (CA)n Simple_repeat Simple_repeat 2 36 0 1822 133 33 36 chr15 31976653 31976954 -69403567 - AluJo SINE Alu -12 300 1 22 35 0 0 chr15 31977396 31977425 -69403096 + AT_rich Low_complexity Low_complexity 1 29 0 2536 50 0 0 chr15 31977469 31977768 -69402753 - AluY SINE Alu -12 299 1 438 275 149 34 chr15 31977779 31978057 -69402464 - L1ME4a LINE L1 -70 6051 5806 2432 80 3 0 chr15 31978057 31978359 -69402162 - AluY SINE Alu -8 303 1 438 275 149 34 chr15 31978359 31978523 -69401998 - L1ME4a LINE L1 -315 5806 5558 487 0 0 0 chr15 31980032 31980086 -69400435 + (TTTA)n Simple_repeat Simple_repeat 3 104 0 1912 154 0 0 chr15 31980086 31980372 -69400149 - AluSx SINE Alu -1 339 1 1948 122 0 0 chr15 31980449 31980712 -69399809 + AluSx SINE Alu 40 302 -10 545 273 203 25 chr15 31981683 31981969 -69398552 + L2 LINE L2 2976 3312 -1 23 0 0 0 chr15 31982592 31982615 -69397906 + AT_rich Low_complexity Low_complexity 1 23 0 201 291 97 39 chr15 31982650 31982753 -69397768 - L2 LINE L2 -21 3292 3184 247 349 14 57 chr15 31982909 31983118 -69397403 - L2 LINE L2 -438 2876 2677 21 0 0 0 chr15 31984469 31984490 -69396031 + AT_rich Low_complexity Low_complexity 1 21 0 2323 100 0 6 chr15 31984943 31985254 -69395267 - AluSc SINE Alu 0 309 1 212 147 0 0 chr15 31987947 31987981 -69392540 + (GAAAA)n Simple_repeat Simple_repeat 4 37 0 21 0 0 0 chr15 31988410 31988431 -69392090 + AT_rich Low_complexity Low_complexity 1 21 0 277 171 14 14 chr15 31989547 31989617 -69390904 + T-rich Low_complexity Low_complexity 4 73 0 236 267 144 22 chr15 31992314 31992404 -69388117 - L2 LINE L2 -25 3247 3147 1103 122 113 50 chr15 31992428 31992649 -69387872 - MER46A DNA MER2_type 0 236 2 201 237 17 17 chr15 31992908 31992967 -69387554 - L2 LINE L2 -553 2761 2703 1648 94 31 20 chr15 31993014 31993269 -69387252 + THE1C LTR MaLR 1 258 -117 2451 55 3 0 chr15 31994184 31994475 -69386046 - AluY SINE Alu -19 292 1 21 0 0 0 chr15 31995452 31995473 -69385048 + AT_rich Low_complexity Low_complexity 1 21 0 775 269 123 0 chr15 31996473 31996700 -69383821 - MIR SINE MIR 0 262 8 306 260 115 10 chr15 31998013 31998117 -69382404 - MIR SINE MIR -96 166 52 226 309 12 0 chr15 31998289 31998370 -69382151 - L3b LINE CR1 -176 1407 1326 415 307 125 21 chr15 31998380 31998572 -69381949 + MIR SINE MIR 50 261 -1 2305 169 133 21 chr15 31999048 31999580 -69380941 - L1MD3 LINE L1 0 7995 7404 410 247 0 32 chr15 31999580 31999673 -69380848 - MLT1F1 LTR MaLR -442 125 36 257 202 173 0 chr15 31999680 31999784 -69380737 - L1MD3 LINE L1 -885 7110 6989 731 254 32 32 chr15 32001982 32002199 -69378322 - L2 LINE L2 -5 3308 3092 456 157 78 52 chr15 32006891 32007006 -69373515 + MER106B DNA MER1_type 939 1056 -3 194 264 65 83 chr15 32007040 32007299 -69373222 - L3 LINE CR1 -214 1363 1071 672 257 53 19 chr15 32008976 32009182 -69371339 - MIR SINE MIR -48 214 2 424 320 170 17 chr15 32009289 32009589 -69370932 + MLT1G1 LTR MaLR 175 520 -75 249 200 40 27 chr15 32010454 32010529 -69369992 + L1MEd LINE L1 495 570 -5549 545 298 83 25 chr15 32010956 32011583 -69368938 + L1MEd LINE L1 993 1748 -742 1778 201 87 69 chr15 32011662 32011698 -69368823 - MLT2B1 LTR ERVL -8 512 478 249 33 0 0 chr15 32011698 32011728 -69368793 + (TG)n Simple_repeat Simple_repeat 2 31 0 1778 201 87 69 chr15 32011728 32012121 -69368400 - MLT2B1 LTR ERVL -42 478 70 1525 183 42 23 chr15 32012121 32012427 -69368094 + AluJb SINE Alu 1 312 0 1778 201 87 69 chr15 32012427 32012489 -69368032 - MLT2B1 LTR ERVL -450 70 11 19745 22 2 2 chr15 32012781 32015137 -69365384 - L1PA3 LINE L1 -1067 5079 2724 7649 25 1 0 chr15 32015137 32016202 -69364319 + L1PA3 LINE L1 5090 6155 0 952 96 7 22 chr15 32016227 32016362 -69364159 + AluJb SINE Alu 1 133 -179 615 173 32 12 chr15 32016379 32016612 -69363909 + GA-rich Low_complexity Low_complexity 1 237 0 231 88 0 0 chr15 32016654 32016688 -69363833 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 227 225 81 50 chr15 32016855 32017015 -69363506 + L1MEd LINE L1 2132 2296 -3833 548 255 235 16 chr15 32017230 32017916 -69362605 + L1MEd LINE L1 2438 3273 -2856 2438 67 0 0 chr15 32019897 32020197 -69360324 - AluY SINE Alu -11 300 1 21 0 0 0 chr15 32024834 32024855 -69355666 + AT_rich Low_complexity Low_complexity 1 21 0 353 291 80 94 chr15 32025093 32025194 -69355327 + MIR SINE MIR 52 153 -109 2009 144 10 0 chr15 32025194 32025485 -69355036 + AluSq SINE Alu 1 294 -19 353 291 80 94 chr15 32025485 32025596 -69354925 + MIR SINE MIR 153 261 -1 504 209 225 11 chr15 32025646 32025832 -69354689 + MIR SINE MIR 25 251 -11 29 28 0 0 chr15 32026198 32026234 -69354287 + AT_rich Low_complexity Low_complexity 1 36 0 395 151 14 14 chr15 32026261 32026334 -69354187 - AluJ/FLAM SINE Alu -228 74 2 21 0 0 0 chr15 32026433 32026454 -69354067 + AT_rich Low_complexity Low_complexity 1 21 0 1809 149 0 55 chr15 32026460 32026769 -69353752 + AluJo SINE Alu 2 293 -19 21 0 0 0 chr15 32027068 32027089 -69353432 + AT_rich Low_complexity Low_complexity 1 21 0 227 323 181 38 chr15 32029623 32029756 -69350765 - L2 LINE L2 0 3272 3121 201 313 116 18 chr15 32029802 32029914 -69350607 - L2 LINE L2 0 3272 3150 1320 196 32 12 chr15 32030449 32030699 -69349822 + AluJo SINE Alu 28 282 -30 744 71 0 0 chr15 32030707 32030806 -69349715 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 630 249 62 85 chr15 32032219 32032524 -69347997 - MLT1K LTR MaLR -11 577 280 1835 119 7 63 chr15 32032548 32032850 -69347671 + AluJo SINE Alu 1 285 -27 391 120 0 63 chr15 32032887 32033062 -69347459 + (TA)n Simple_repeat Simple_repeat 2 165 0 188 309 0 0 chr15 32033527 32033569 -69346952 - L3b LINE CR1 -12 1571 1530 232 246 62 0 chr15 32035158 32035223 -69345298 + MIR3 SINE MIR 100 168 -40 2206 132 0 0 chr15 32035960 32036263 -69344258 + AluSx SINE Alu 1 303 -9 221 205 0 13 chr15 32036904 32036982 -69343539 + GA-rich Low_complexity Low_complexity 1 77 0 216 0 0 0 chr15 32038088 32038112 -69342409 + (T)n Simple_repeat Simple_repeat 1 24 0 27 62 0 0 chr15 32038966 32039014 -69341507 + AT_rich Low_complexity Low_complexity 1 48 0 2192 119 0 0 chr15 32041890 32042193 -69338328 - AluSg SINE Alu -7 303 1 351 264 151 19 chr15 32043125 32043284 -69337237 + MIR SINE MIR 49 228 -34 266 354 114 43 chr15 32043389 32043643 -69336878 + L2 LINE L2 2997 3268 -4 1738 297 103 23 chr15 32044072 32044691 -69335830 - MER115 DNA AcHobo -23 670 2 193 285 127 57 chr15 32045718 32045876 -69334645 + L3b LINE CR1 1164 1332 -251 320 274 111 17 chr15 32046164 32046281 -69334240 - MER5B DNA MER1_type -1 177 50 2486 243 48 54 chr15 32046799 32047712 -69332809 - L1ME1 LINE L1 -5 6230 5323 6649 221 63 34 chr15 32047713 32048582 -69331939 - L1ME1 LINE L1 -1200 5015 4172 1711 174 11 11 chr15 32048582 32048869 -69331652 + AluJo SINE Alu 12 298 -14 6649 221 63 34 chr15 32048869 32049864 -69330657 - L1ME1 LINE L1 -2043 4172 3207 316 0 45 0 chr15 32049864 32049908 -69330613 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 6649 221 63 34 chr15 32049908 32049920 -69330601 - L1ME1 LINE L1 -3008 3207 3197 6945 63 15 0 chr15 32049920 32050928 -69329593 - L1PA6 LINE L1 -13 6141 5130 6649 221 63 34 chr15 32050928 32051343 -69329178 - L1ME1 LINE L1 -3018 3197 2657 977 281 45 72 chr15 32051327 32051796 -69328725 - L1ME1 LINE L1 -5940 456 1 * 324 0 0 0 chr15 32051933 32051969 -69328552 + (TC)n Simple_repeat Simple_repeat 1 36 0 279 0 0 0 chr15 32052585 32052616 -69327905 + (TG)n Simple_repeat Simple_repeat 2 32 0 810 229 6 0 chr15 32053188 32053358 -69327163 - FRAM SINE Alu -5 171 1 679 270 38 11 chr15 32053570 32053755 -69326766 - MIR SINE MIR 0 262 73 413 324 77 45 chr15 32053744 32053991 -69326530 - L2 LINE L2 -553 2761 2507 * 22 0 0 0 chr15 32055007 32055029 -69325492 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr15 32056968 32056991 -69323530 + (A)n Simple_repeat Simple_repeat 1 23 0 180 111 0 0 chr15 32058170 32058197 -69322324 + (T)n Simple_repeat Simple_repeat 1 27 0 1989 138 0 7 chr15 32058307 32058603 -69321918 - AluSc SINE Alu -15 294 1 275 217 53 121 chr15 32061884 32062239 -69318282 + L1MC5 LINE L1 7452 7782 -179 21 0 0 0 chr15 32062395 32062416 -69318105 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr15 32064021 32064047 -69316474 + AT_rich Low_complexity Low_complexity 1 26 0 2409 86 0 3 chr15 32066514 32066817 -69313704 + AluSx SINE Alu 1 302 -10 1517 285 98 4 chr15 32067539 32068052 -69312469 + L2 LINE L2 1935 2495 -819 894 255 112 25 chr15 32068055 32068542 -69311979 + L2 LINE L2 2745 3290 -23 1307 215 3 44 chr15 32068740 32069075 -69311446 + AluJo SINE Alu 1 323 0 427 216 10 0 chr15 32069734 32069831 -69310690 - MER103 DNA DNA -68 98 1 319 307 106 17 chr15 32070057 32070236 -69310285 - MER102b DNA MER1_type -23 318 124 2326 94 0 0 chr15 32070236 32070534 -69309987 + AluSp SINE Alu 1 298 -15 1119 163 0 0 chr15 32070559 32070731 -69309790 - FRAM SINE Alu -5 171 1 2021 153 10 47 chr15 32071154 32071539 -69308982 - MLT1B LTR MaLR -5 385 15 205 311 93 43 chr15 32072351 32072512 -69308009 - L2 LINE L2 -1 3312 3144 272 329 180 0 chr15 32072747 32072908 -69307613 - L2 LINE L2 -467 2847 2658 1879 165 10 0 chr15 32073239 32073542 -69306979 + AluJb SINE Alu 1 306 -6 501 326 28 17 chr15 32074084 32074262 -69306259 - L2 LINE L2 -1 3312 3133 24 0 0 0 chr15 32074977 32075001 -69305520 + AT_rich Low_complexity Low_complexity 1 24 0 2254 108 0 0 chr15 32075313 32075608 -69304913 + AluSx SINE Alu 1 295 -17 261 0 0 0 chr15 32076299 32076328 -69304193 + (CA)n Simple_repeat Simple_repeat 1 29 0 1570 142 68 29 chr15 32076382 32076663 -69303858 - AluJb SINE Alu -5 307 16 199 248 144 96 chr15 32077161 32077286 -69303235 - MIR3 SINE MIR -7 201 71 369 287 176 37 chr15 32077641 32077857 -69302664 + MIR SINE MIR 2 247 -15 197 347 50 33 chr15 32078985 32079106 -69301415 - L3 LINE CR1 -1446 131 9 287 325 48 12 chr15 32080024 32080107 -69300414 - MIR SINE MIR -65 143 58 293 82 20 0 chr15 32080841 32080890 -69299631 + (TA)n Simple_repeat Simple_repeat 2 51 0 834 181 0 0 chr15 32081041 32081174 -69299347 + AluSq/x SINE Alu 1 133 -179 4442 66 12 13 chr15 32081189 32081791 -69298730 + L1PA10 LINE L1 5560 6160 -8 23 0 0 0 chr15 32083240 32083263 -69297258 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr15 32084196 32084216 -69296305 + (A)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr15 32085893 32085916 -69294605 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 23 0 0 0 chr15 32086223 32086246 -69294275 + AT_rich Low_complexity Low_complexity 1 23 0 3796 164 26 11 chr15 32087066 32087761 -69292760 + MER44D DNA MER2_type 1 705 0 327 185 0 0 chr15 32088039 32088093 -69292428 + MIR SINE MIR 93 146 -62 1920 147 118 11 chr15 32089262 32089644 -69290877 - MSTA LTR MaLR -5 423 1 348 299 101 19 chr15 32089647 32089854 -69290667 - L1ME4a LINE L1 -206 5915 5692 246 32 0 0 chr15 32090344 32090375 -69290146 + (TGG)n Simple_repeat Simple_repeat 1 31 0 433 273 30 20 chr15 32090375 32090573 -69289948 - L1ME4a LINE L1 -420 5701 5502 243 0 0 0 chr15 32092108 32092135 -69288386 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6892 32 6 0 chr15 32092135 32092997 -69287524 - L1PA5 LINE L1 -12 6142 5276 223 178 0 0 chr15 32093818 32093863 -69286658 + T-rich Low_complexity Low_complexity 1 45 0 1322 260 67 60 chr15 32094281 32094673 -69285848 + MLT1J LTR MaLR 12 409 -102 2239 128 0 0 chr15 32094673 32094985 -69285536 - AluSx SINE Alu 0 312 1 1322 260 67 60 chr15 32094985 32095088 -69285433 + MLT1J LTR MaLR 409 510 -1 21 57 0 0 chr15 32095262 32095297 -69285224 + AT_rich Low_complexity Low_complexity 1 35 0 5869 142 8 41 chr15 32095336 32096802 -69283719 - L1MA10 LINE L1 -3 6331 4915 244 324 72 36 chr15 32097867 32098006 -69282515 + MIR3 SINE MIR 21 164 -44 2605 158 15 24 chr15 32098803 32099271 -69281250 - MLT2C2 LTR ERVL 0 464 1 291 193 36 60 chr15 32099271 32099354 -69281167 - MIR SINE MIR -99 163 83 230 81 27 0 chr15 32099723 32099760 -69280761 + (TC)n Simple_repeat Simple_repeat 1 38 0 205 280 19 0 chr15 32099912 32100019 -69280502 + GA-rich Low_complexity Low_complexity 1 109 0 1911 135 3 3 chr15 32100071 32100378 -69280143 - AluSx SINE Alu 0 307 1 528 228 68 6 chr15 32100463 32100625 -69279896 + MER5B DNA MER1_type 1 172 -6 1326 43 0 0 chr15 32100833 32100994 -69279527 + L1PA7 LINE L1 5994 6154 0 411 217 151 0 chr15 32101042 32101148 -69279373 - MER5B DNA MER1_type -53 125 4 2187 93 3 3 chr15 32101286 32101576 -69278945 + AluSg SINE Alu 10 299 -11 826 265 45 19 chr15 32101782 32102095 -69278426 + MER46C DNA MER2_type 12 332 -6 960 195 19 10 chr15 32102929 32103134 -69277387 + MER3 DNA MER1_type 3 209 0 279 0 0 0 chr15 32103763 32103794 -69276727 + (TG)n Simple_repeat Simple_repeat 1 31 0 219 69 0 0 chr15 32105508 32105537 -69274984 + (TATG)n Simple_repeat Simple_repeat 2 30 0 257 264 0 0 chr15 32107169 32107222 -69273299 - L2 LINE L2 -7 3306 3254 1639 179 28 0 chr15 32107254 32107539 -69272982 - AluJb SINE Alu -18 294 2 268 203 0 17 chr15 32108782 32108841 -69271680 - MER117 DNA MER1_type -106 91 34 209 325 64 69 chr15 32109083 32109271 -69271250 - MER5A DNA MER1_type 0 189 3 252 212 141 35 chr15 32109294 32109379 -69271142 + MIR SINE MIR 30 123 -139 419 267 180 7 chr15 32110331 32110481 -69270040 - MIR SINE MIR -56 206 31 464 325 32 37 chr15 32110932 32111120 -69269401 - MIR3 SINE MIR -5 203 17 348 279 98 8 chr15 32111437 32111559 -69268962 - L2 LINE L2 -1 3271 3139 223 159 0 23 chr15 32113869 32113913 -69266608 + L2 LINE L2 3210 3252 -20 200 162 14 54 chr15 32117469 32117543 -69262978 + (TA)n Simple_repeat Simple_repeat 1 71 0 312 27 0 0 chr15 32117700 32117737 -69262784 + (TA)n Simple_repeat Simple_repeat 1 37 0 1525 156 4 0 chr15 32117737 32117975 -69262546 - AluSp SINE Alu -4 309 71 1579 141 28 4 chr15 32118127 32118376 -69262145 - AluJb SINE Alu -57 255 1 329 186 9 106 chr15 32119495 32119608 -69260913 - L2 LINE L2 -620 2694 2593 195 222 93 0 chr15 32120550 32120604 -69259917 + MIR SINE MIR 20 78 -184 1164 144 5 10 chr15 32120848 32121056 -69259465 - MLT1B LTR MaLR -183 207 1 387 308 86 0 chr15 32121116 32121233 -69259288 - MIR SINE MIR -124 138 12 2157 107 38 41 chr15 32121910 32122275 -69258246 + THE1B LTR MaLR 1 364 0 670 160 0 0 chr15 32122415 32122515 -69258006 - AluJ/FLAM SINE Alu -212 100 1 368 299 43 17 chr15 32122515 32122632 -69257889 + MIR SINE MIR 93 212 -50 398 294 6 69 chr15 32123341 32123501 -69257020 + MIR SINE MIR 57 206 -56 321 191 257 9 chr15 32123651 32123756 -69256765 + FLAM_C SINE Alu 2 132 -1 633 143 19 0 chr15 32124082 32124187 -69256334 - AluSx SINE Alu -15 294 188 1016 107 0 0 chr15 32124188 32124319 -69256202 - AluSx SINE Alu -181 132 2 225 226 0 0 chr15 32124321 32124374 -69256147 + L1ME2 LINE L1 6103 6155 -9 233 302 217 39 chr15 32125821 32125950 -69254571 + L2 LINE L2 3121 3272 0 200 162 14 54 chr15 32127698 32127772 -69252749 + (TA)n Simple_repeat Simple_repeat 1 71 0 312 27 0 0 chr15 32127929 32127966 -69252555 + (TA)n Simple_repeat Simple_repeat 2 38 0 1913 80 4 0 chr15 32127966 32128204 -69252317 - AluSp SINE Alu -4 309 71 233 193 0 6 chr15 32128204 32128259 -69252262 - AluSp SINE Alu -262 38 1 23 33 0 0 chr15 32128504 32128534 -69251987 + AT_rich Low_complexity Low_complexity 1 30 0 396 59 0 0 chr15 32129994 32130002 -69250519 + (TG)n Simple_repeat Simple_repeat 1 59 0 396 59 0 0 chr15 32130002 32130053 -69250468 + (TG)n Simple_repeat Simple_repeat 2 52 0 670 233 277 5 chr15 32131238 32131440 -69249081 + MIR SINE MIR 1 257 -5 369 62 0 0 chr15 32132311 32132359 -69248162 + (CA)n Simple_repeat Simple_repeat 1 48 0 210 188 471 0 chr15 32135001 32135086 -69245435 + L2 LINE L2 3185 3309 -4 198 0 0 0 chr15 32135171 32135193 -69245328 + (T)n Simple_repeat Simple_repeat 1 22 0 2276 102 0 0 chr15 32135228 32135521 -69245000 - AluSx SINE Alu -19 293 1 830 225 18 0 chr15 32137354 32137523 -69242998 + FRAM SINE Alu 3 174 -2 3672 128 49 8 chr15 32137802 32138412 -69242109 - L1MA4A LINE L1 -7 6296 5662 246 146 18 73 chr15 32138495 32138550 -69241971 + L1MA6 LINE L1 5734 5785 -386 289 176 137 0 chr15 32138652 32138703 -69241818 + MER30 DNA MER1_type 173 230 0 678 195 7 7 chr15 32139028 32139177 -69241344 + L1MA6 LINE L1 5998 6146 -154 1583 108 16 12 chr15 32139950 32140208 -69240313 + L1MA4A LINE L1 6040 6298 -5 1307 143 0 0 chr15 32140395 32140604 -69239917 - L1PA13 LINE L1 -20 6143 5935 365 287 77 21 chr15 32140803 32140946 -69239575 - L2 LINE L2 -8 3305 3155 201 308 90 87 chr15 32142503 32142824 -69237697 + L2 LINE L2 2898 3219 -53 322 271 70 16 chr15 32142896 32143025 -69237496 + MIR SINE MIR 16 150 -71 1347 173 60 69 chr15 32143536 32143595 -69236926 - L1MB2 LINE L1 -1 6170 6112 2369 50 4 4 chr15 32143595 32143875 -69236646 - AluY SINE Alu -15 296 17 1347 173 60 69 chr15 32143875 32144162 -69236359 - L1MB2 LINE L1 -59 6112 5827 399 287 216 6 chr15 32144387 32144568 -69235953 - MER102b DNA MER1_type -51 290 72 606 339 164 17 chr15 32144579 32145048 -69235473 - L3 LINE CR1 -107 1470 933 822 241 0 91 chr15 32145055 32145275 -69235246 + MIR SINE MIR 40 239 -23 225 292 62 88 chr15 32145501 32145614 -69234907 - L2 LINE L2 -26 3246 3137 2121 120 13 7 chr15 32145722 32146022 -69234499 - AluSx SINE Alu -10 302 1 216 0 0 0 chr15 32151084 32151108 -69229413 + (CA)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr15 32151270 32151292 -69229229 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr15 32154335 32154363 -69226158 + AT_rich Low_complexity Low_complexity 1 28 0 443 305 30 38 chr15 32154621 32154752 -69225769 + L2 LINE L2 3143 3272 0 183 302 19 0 chr15 32155665 32155718 -69224803 - L2 LINE L2 -13 3300 3247 246 62 0 0 chr15 32156420 32156452 -69224069 + (T)n Simple_repeat Simple_repeat 1 32 0 25 51 0 0 chr15 32156885 32156924 -69223597 + AT_rich Low_complexity Low_complexity 1 39 0 467 279 161 6 chr15 32159645 32159806 -69220715 - MIR3 SINE MIR -3 205 20 369 242 224 24 chr15 32160283 32160448 -69220073 + MIR SINE MIR 2 199 -63 22 0 0 0 chr15 32160511 32160533 -69219988 + AT_rich Low_complexity Low_complexity 1 22 0 35 0 0 0 chr15 32161641 32161676 -69218845 + AT_rich Low_complexity Low_complexity 1 35 0 2188 119 0 0 chr15 32161720 32162014 -69218507 + AluSx SINE Alu 1 294 -18 367 218 97 32 chr15 32163240 32163364 -69217157 + MLT1L LTR MaLR 378 613 -2 612 288 74 26 chr15 32163971 32164200 -69216321 + MIR SINE MIR 20 259 -3 391 311 17 17 chr15 32164169 32164288 -69216233 - MIR SINE MIR -80 182 64 * 416 316 78 48 chr15 32164355 32164750 -69215771 + MLT1I LTR MaLR 1 407 -2 21 0 0 0 chr15 32165087 32165108 -69215413 + AT_rich Low_complexity Low_complexity 1 21 0 3875 206 29 15 chr15 32165247 32166219 -69214302 + L1ME1 LINE L1 5177 6162 -4 1117 270 49 80 chr15 32166894 32167247 -69213274 + MLT1L LTR MaLR 82 413 -202 1425 203 7 3 chr15 32167247 32167533 -69212988 + AluJb SINE Alu 1 287 -25 1117 270 49 80 chr15 32167533 32167730 -69212791 + MLT1L LTR MaLR 413 615 0 23 33 0 0 chr15 32167841 32167871 -69212650 + AT_rich Low_complexity Low_complexity 1 30 0 615 160 59 0 chr15 32167878 32167997 -69212524 + L1MC3 LINE L1 7660 7785 0 282 264 50 30 chr15 32168173 32168283 -69212238 - MIR SINE MIR -65 143 43 22 0 0 0 chr15 32168870 32168892 -69211629 + AT_rich Low_complexity Low_complexity 1 22 0 263 215 231 8 chr15 32169170 32169291 -69211230 + Charlie7 DNA MER1_type 1 148 -2464 1321 185 0 5 chr15 32169880 32170091 -69210430 + AluJo SINE Alu 1 210 -102 213 94 0 0 chr15 32170111 32170143 -69210378 + (A)n Simple_repeat Simple_repeat 1 32 0 1420 127 164 44 chr15 32170158 32170178 -69210343 - MER47A DNA MER2_type -2015 308 292 2141 98 25 0 chr15 32170178 32170463 -69210058 - AluSc SINE Alu -17 292 1 1420 127 164 44 chr15 32170463 32170717 -69209804 - MER47A DNA MER2_type -2031 292 1 896 258 62 82 chr15 32170766 32171169 -69209352 - L2 LINE L2 -704 2610 2216 2385 88 0 0 chr15 32171266 32171563 -69208958 - AluSg1 SINE Alu -12 297 1 1237 211 40 16 chr15 32174346 32174687 -69205834 - MLT1C LTR MaLR -3 387 46 1229 201 29 69 chr15 32175125 32175473 -69205048 - MER46C DNA MER2_type 0 338 5 3346 213 35 21 chr15 32176204 32177478 -69203043 + L1ME LINE L1 4475 5780 -386 2142 198 61 11 chr15 32177824 32178269 -69202252 - MLT1C LTR MaLR 0 467 1 397 261 63 42 chr15 32178395 32178537 -69201984 - L2 LINE L2 0 3313 3169 223 253 11 92 chr15 32179574 32179661 -69200860 - L2 LINE L2 -984 2330 2251 942 129 105 29 chr15 32179864 32180035 -69200486 + AluJo SINE Alu 117 300 -12 912 266 91 33 chr15 32180380 32180711 -69199810 - MARNA DNA Mariner -9 577 228 343 155 124 36 chr15 32181383 32181616 -69198905 + AluJo SINE Alu 3 301 -1 184 298 0 0 chr15 32184982 32185029 -69195492 - L2 LINE L2 -219 3053 3007 2255 223 106 14 chr15 32186065 32186871 -69193650 - L1MC4 LINE L1 -1 8041 7162 1283 124 4 100 chr15 32186872 32187041 -69193480 - AluJb SINE Alu 0 312 128 2180 116 0 10 chr15 32187041 32187342 -69193179 - AluSx SINE Alu -14 298 1 1283 124 4 100 chr15 32187342 32187357 -69193164 - AluJb SINE Alu -184 128 113 207 0 0 0 chr15 32187357 32187380 -69193141 + (TG)n Simple_repeat Simple_repeat 2 24 0 1283 124 4 100 chr15 32187380 32187444 -69193077 - AluJb SINE Alu -199 113 87 918 159 137 70 chr15 32187448 32187763 -69192758 - L1MC4 LINE L1 -868 7174 6839 460 299 61 0 chr15 32187773 32187920 -69192601 - MIR SINE MIR -44 218 63 229 301 0 27 chr15 32188442 32188515 -69192006 + L2 LINE L2 969 1039 -2275 2305 98 7 0 chr15 32188699 32188995 -69191526 + AluSg SINE Alu 1 298 -12 21 0 0 0 chr15 32192812 32192833 -69187688 + AT_rich Low_complexity Low_complexity 1 21 0 568 278 95 6 chr15 32193168 32193337 -69187184 + MIR SINE MIR 27 210 -52 209 167 0 48 chr15 32193756 32193798 -69186723 + L2 LINE L2 3192 3231 -82 478 225 132 8 chr15 32194399 32194528 -69185993 - MER5B DNA MER1_type -3 175 31 2193 137 23 8 chr15 32195189 32195576 -69184945 - MER57A LTR ERV1 -10 393 1 27 49 0 0 chr15 32195771 32195812 -69184709 + AT_rich Low_complexity Low_complexity 1 41 0 2547 41 3 22 chr15 32196053 32196370 -69184151 - AluY SINE Alu 0 311 1 832 289 14 10 chr15 32198509 32198800 -69181721 + L1ME1 LINE L1 399 690 -5706 * 3027 218 49 26 chr15 32198791 32199249 -69181272 + L1ME1 LINE L1 4745 5191 -1044 1667 191 10 7 chr15 32199249 32199543 -69180978 - AluJb SINE Alu -16 296 2 3027 218 49 26 chr15 32199543 32200537 -69179984 + L1ME1 LINE L1 5191 6230 -5 231 231 183 39 chr15 32200593 32200697 -69179824 + LTR33 LTR ERVL 6 124 -397 410 0 20 0 chr15 32200969 32201019 -69179502 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 243 258 25 50 chr15 32201189 32201309 -69179212 + L1ME3 LINE L1 2276 2392 -3823 1747 144 0 8 chr15 32201372 32201636 -69178885 + AluSq SINE Alu 1 262 -51 306 180 0 0 chr15 32201640 32201701 -69178820 + GA-rich Low_complexity Low_complexity 2 62 0 947 218 18 32 chr15 32201728 32201948 -69178573 + U3 snRNA snRNA 1 217 0 341 304 45 5 chr15 32201975 32202176 -69178345 + L1ME3 LINE L1 2487 2695 -3520 2274 255 24 16 chr15 32202343 32202606 -69177915 + L1ME3 LINE L1 5402 5662 -569 1573 162 86 19 chr15 32202606 32202921 -69177600 + MER44D DNA MER2_type 4 609 0 2274 255 24 16 chr15 32202921 32203332 -69177189 + L1ME3 LINE L1 5662 6081 -150 1628 142 10 26 chr15 32203377 32203680 -69176841 - L1MB1 LINE L1 -7 6161 5864 1982 144 0 0 chr15 32203680 32204014 -69176507 + L1MB1 LINE L1 5543 5876 -313 227 256 12 12 chr15 32204110 32204192 -69176329 + L1ME3 LINE L1 6149 6230 -1 425 314 51 4 chr15 32204337 32204573 -69175948 + L1MEc LINE L1 3702 3948 -2267 1575 290 62 27 chr15 32204578 32205570 -69174951 + L1MEc LINE L1 390 1415 -4981 297 120 0 0 chr15 32205641 32205691 -69174830 + L1ME1 LINE L1 5666 5715 -449 235 96 39 39 chr15 32205692 32205744 -69174777 + T-rich Low_complexity Low_complexity 4 55 0 721 98 32 0 chr15 32205762 32205885 -69174636 + C-rich Low_complexity Low_complexity 2 128 0 1662 194 3 13 chr15 32205885 32206199 -69174322 - AluJb SINE Alu -1 311 1 1336 213 84 29 chr15 32206199 32206649 -69173872 + L1ME1 LINE L1 5700 6331 -3 252 255 10 10 chr15 32206762 32206860 -69173661 + L1MEc LINE L1 4558 4655 -1560 554 152 0 22 chr15 32207227 32207319 -69173202 - AluJb SINE Alu -19 293 204 639 243 80 63 chr15 32210082 32210242 -69170279 - MIR SINE MIR 0 262 95 2211 84 42 0 chr15 32210242 32210528 -69169993 + AluSq SINE Alu 1 298 -15 639 243 80 63 chr15 32210528 32210606 -69169915 - MIR SINE MIR -167 95 20 872 324 108 38 chr15 32211113 32211855 -69168666 + L2 LINE L2 1167 1960 -1354 661 325 109 65 chr15 32211894 32212912 -69167609 - L2 LINE L2 -53 3219 2148 373 296 66 101 chr15 32213030 32213347 -69167174 + L2 LINE L2 2934 3239 -33 484 239 239 12 chr15 32213406 32213572 -69166949 - MIR3 SINE MIR 0 208 12 268 293 10 50 chr15 32213874 32214062 -69166459 - MIR SINE MIR 0 262 30 26 0 0 0 chr15 32214792 32214818 -69165703 + AT_rich Low_complexity Low_complexity 1 26 0 303 329 43 37 chr15 32215840 32216001 -69164520 + MIR3 SINE MIR 36 197 -11 195 162 0 0 chr15 32217177 32217214 -69163307 + A-rich Low_complexity Low_complexity 3 39 0 372 164 0 0 chr15 32218728 32218795 -69161726 + A-rich Low_complexity Low_complexity 1 67 0 186 73 73 0 chr15 32219322 32219363 -69161158 + GA-rich Low_complexity Low_complexity 1 44 0 345 62 0 0 chr15 32220146 32220194 -69160327 + (TG)n Simple_repeat Simple_repeat 1 48 0 197 176 0 39 chr15 32221060 32221111 -69159410 + GA-rich Low_complexity Low_complexity 6 54 0 260 243 14 0 chr15 32223470 32223540 -69156981 + (TA)n Simple_repeat Simple_repeat 2 72 0 396 0 0 0 chr15 32224592 32224636 -69155885 + (TG)n Simple_repeat Simple_repeat 2 45 0 186 43 0 0 chr15 32225056 32225079 -69155442 + (TTA)n Simple_repeat Simple_repeat 2 24 0 24 53 0 0 chr15 32229819 32229857 -69150664 + GC_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr15 32231895 32231918 -69148603 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 32236067 32236089 -69144432 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 32239913 32239935 -69140586 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr15 32240884 32240910 -69139611 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr15 32243091 32243113 -69137408 + AT_rich Low_complexity Low_complexity 1 22 0 633 240 80 25 chr15 32243386 32243586 -69136935 + MIR SINE MIR 46 256 -6 370 216 216 34 chr15 32243910 32244058 -69136463 + MER5A DNA MER1_type 15 189 0 21 0 0 0 chr15 32244221 32244242 -69136279 + AT_rich Low_complexity Low_complexity 1 21 0 31 44 0 0 chr15 32244385 32244430 -69136091 + AT_rich Low_complexity Low_complexity 1 45 0 238 246 0 18 chr15 32246219 32246276 -69134245 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 211 189 0 0 chr15 32246374 32246411 -69134110 + (CA)n Simple_repeat Simple_repeat 2 38 0 186 43 0 0 chr15 32247859 32247882 -69132639 + (A)n Simple_repeat Simple_repeat 1 23 0 2027 63 78 15 chr15 32249884 32250192 -69130329 + AluSp SINE Alu 1 325 0 289 343 123 37 chr15 32250309 32250609 -69129912 + L2 LINE L2 2945 3270 -2 1460 167 0 30 chr15 32251164 32251433 -69129088 + AluJb SINE Alu 34 294 -18 252 311 0 50 chr15 32251538 32251657 -69128864 + MER103 DNA DNA 9 121 -45 21 36 0 0 chr15 32251749 32251777 -69128744 + AT_rich Low_complexity Low_complexity 1 28 0 2401 66 3 3 chr15 32251976 32252277 -69128244 + AluSg SINE Alu 2 302 -8 195 42 0 0 chr15 32252481 32252505 -69128016 + (TG)n Simple_repeat Simple_repeat 2 25 0 * 254 140 0 20 chr15 32252500 32252550 -69127971 + (TA)n Simple_repeat Simple_repeat 1 49 0 225 197 0 66 chr15 32252654 32252730 -69127791 + GA-rich Low_complexity Low_complexity 3 73 0 204 40 0 0 chr15 32254042 32254067 -69126454 + (A)n Simple_repeat Simple_repeat 1 25 0 208 327 0 0 chr15 32254390 32254442 -69126079 + L2 LINE L2 3205 3256 -16 30 0 0 0 chr15 32254485 32254515 -69126006 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr15 32254797 32254818 -69125703 + AT_rich Low_complexity Low_complexity 1 21 0 2276 102 0 7 chr15 32257357 32257661 -69122860 + AluY SINE Alu 1 302 -9 1880 166 0 3 chr15 32257661 32257944 -69122577 - AluJo SINE Alu -30 282 1 608 294 75 15 chr15 32258002 32258203 -69122318 - MIR SINE MIR -1 261 49 201 279 0 0 chr15 32259233 32259276 -69121245 - L2 LINE L2 -9 3304 3262 532 243 40 62 chr15 32259487 32259664 -69120857 + MIR SINE MIR 48 220 -42 322 235 182 11 chr15 32260035 32260180 -69120341 + MIR SINE MIR 12 188 -62 520 152 0 33 chr15 32260187 32260279 -69120242 + AluJ/FLAM SINE Alu 1 89 -223 * 759 194 0 7 chr15 32260270 32260414 -69120107 + AluJo/FRAM SINE Alu 162 304 -8 2267 101 7 0 chr15 32260508 32260806 -69119715 + AluSp SINE Alu 1 300 -13 387 0 0 0 chr15 32261330 32261373 -69119148 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2236 68 11 0 chr15 32261380 32261658 -69118863 - AluSp SINE Alu -32 281 1 264 30 0 0 chr15 32262196 32262229 -69118292 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 269 310 73 30 chr15 32263357 32263557 -69116964 + MIR SINE MIR 16 221 -41 1975 114 29 26 chr15 32263819 32264127 -69116394 - AluSg SINE Alu -1 309 1 249 238 0 0 chr15 32266337 32266417 -69114104 + A-rich Low_complexity Low_complexity 1 80 0 24 53 0 0 chr15 32269099 32269137 -69111384 + AT_rich Low_complexity Low_complexity 1 38 0 290 357 137 6 chr15 32269577 32269745 -69110776 - MIR SINE MIR -71 191 2 217 259 0 0 chr15 32270125 32270179 -69110342 + A-rich Low_complexity Low_complexity 1 54 0 327 284 37 0 chr15 32270264 32270345 -69110176 + L2 LINE L2 3137 3220 -52 284 250 73 52 chr15 32270818 32270914 -69109607 + L2 LINE L2 3150 3247 -25 2250 100 10 10 chr15 32271132 32271432 -69109089 + AluSx SINE Alu 1 300 -12 218 309 0 0 chr15 32273089 32273144 -69107377 + (CAGA)n Simple_repeat Simple_repeat 4 58 0 244 310 60 10 chr15 32273469 32273569 -69106952 + MER91C DNA MER1_type 36 140 0 21 36 0 0 chr15 32273653 32273681 -69106840 + AT_rich Low_complexity Low_complexity 1 28 0 237 233 17 0 chr15 32273860 32273920 -69106601 + (TG)n Simple_repeat Simple_repeat 2 62 0 201 74 0 0 chr15 32276388 32276415 -69104106 + (T)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr15 32277004 32277026 -69103495 + AT_rich Low_complexity Low_complexity 1 22 0 329 327 19 9 chr15 32277282 32277389 -69103132 - L2 LINE L2 -3 3269 3162 1884 71 0 4 chr15 32277400 32277638 -69102883 - AluY SINE Alu -6 305 69 615 246 102 5 chr15 32279930 32280117 -69100404 - MIR3 SINE MIR 0 208 4 22 56 0 0 chr15 32284237 32284273 -69096248 + AT_rich Low_complexity Low_complexity 1 36 0 718 298 31 9 chr15 32287879 32288104 -69092417 - MIR SINE MIR -30 232 3 278 300 12 0 chr15 32291260 32291340 -69089181 + GA-rich Low_complexity Low_complexity 2 82 0 417 39 0 0 chr15 32293821 32293872 -69086649 + (TG)n Simple_repeat Simple_repeat 2 52 0 273 140 18 18 chr15 32295336 32295393 -69085128 + L1P5 LINE L1 5724 5780 -376 331 258 125 8 chr15 32295418 32295538 -69084983 + L1MC4a LINE L1 5862 5995 -1813 27 29 0 0 chr15 32295617 32295651 -69084870 + AT_rich Low_complexity Low_complexity 1 34 0 209 125 16 47 chr15 32295651 32295715 -69084806 + (TTAAA)n Simple_repeat Simple_repeat 3 64 0 2210 51 25 63 chr15 32297109 32297424 -69083097 + AluY SINE Alu 1 303 -8 261 328 35 43 chr15 32297460 32297576 -69082945 - MIR SINE MIR -62 146 32 872 301 93 4 chr15 32297744 32298013 -69082508 + MLT1K LTR MaLR 226 518 -70 203 246 0 14 chr15 32298102 32298171 -69082350 + GA-rich Low_complexity Low_complexity 2 69 0 287 345 35 41 chr15 32298853 32298998 -69081523 + L2 LINE L2 3129 3272 0 366 343 0 0 chr15 32300245 32300347 -69080174 - MIR3 SINE MIR -15 193 92 451 340 68 31 chr15 32300519 32300710 -69079811 + L2 LINE L2 3074 3271 -1 1496 178 86 29 chr15 32303547 32303862 -69076659 + MER2 DNA MER2_type 13 345 0 22 0 0 0 chr15 32303927 32303949 -69076572 + AT_rich Low_complexity Low_complexity 1 22 0 2228 92 0 16 chr15 32304306 32304609 -69075912 + AluSx SINE Alu 1 298 -14 277 274 9 62 chr15 32305445 32305558 -69074963 + L2 LINE L2 3207 3313 0 707 301 26 5 chr15 32307640 32307833 -69072688 + MIR SINE MIR 8 204 -58 477 293 134 16 chr15 32307856 32308102 -69072419 - L2 LINE L2 -51 3262 2988 210 243 29 57 chr15 32308216 32308286 -69072235 + MIR SINE MIR 192 259 -3 335 270 22 34 chr15 32309215 32309402 -69071119 + MLT1I LTR MaLR 270 409 0 2559 37 0 3 chr15 32311335 32311631 -69068890 + AluY SINE Alu 1 295 -16 22 35 0 0 chr15 32312133 32312162 -69068359 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr15 32312751 32312778 -69067743 + (A)n Simple_repeat Simple_repeat 1 27 0 282 95 0 0 chr15 32312934 32312976 -69067545 + (A)n Simple_repeat Simple_repeat 1 42 0 409 356 27 5 chr15 32313691 32313879 -69066642 + L2 LINE L2 2622 2813 -501 687 68 0 0 chr15 32313879 32313967 -69066554 - AluS SINE Alu -224 88 1 452 198 55 0 chr15 32314493 32314584 -69065937 + MIR SINE MIR 97 192 -70 198 219 0 0 chr15 32316910 32316942 -69063579 - L2 LINE L2 -19 3253 3222 255 229 16 0 chr15 32316986 32317047 -69063474 - MIR SINE MIR -149 113 52 1422 114 32 4 chr15 32317175 32317421 -69063100 + L1MA8 LINE L1 6039 6291 0 2379 73 0 3 chr15 32317495 32317795 -69062726 - AluSg SINE Alu -11 299 1 195 130 78 0 chr15 32317868 32317945 -69062576 + (TA)n Simple_repeat Simple_repeat 1 83 0 2204 94 0 7 chr15 32318253 32318564 -69061957 + AluSp SINE Alu 1 309 0 299 322 143 35 chr15 32318818 32319048 -69061473 + MIR SINE MIR 7 261 -1 501 251 219 27 chr15 32319636 32319855 -69060666 - MIR SINE MIR 0 262 2 713 275 105 21 chr15 32319944 32320421 -69060100 - L1ME4a LINE L1 -8 6113 5597 1969 173 11 6 chr15 32320447 32320800 -69059721 + MER46B DNA MER2_type 1 230 -6 322 290 129 1 chr15 32320807 32321002 -69059519 - L1ME4a LINE L1 -620 5550 5332 243 118 71 0 chr15 32321094 32321179 -69059342 + (TA)n Simple_repeat Simple_repeat 1 91 0 26 50 0 0 chr15 32321274 32321314 -69059207 + AT_rich Low_complexity Low_complexity 1 40 0 361 359 76 29 chr15 32321502 32321719 -69058802 - L1ME4a LINE L1 -832 5314 5076 2139 91 94 21 chr15 32321719 32322058 -69058463 - THE1B LTR MaLR 0 364 1 361 359 76 29 chr15 32322058 32322155 -69058366 - L1ME4a LINE L1 -1070 5076 4985 446 258 131 73 chr15 32322493 32322904 -69057617 - L1ME4a LINE L1 -1631 4515 4081 3006 118 66 23 chr15 32323018 32323047 -69057474 - L1MA9 LINE L1 -155 6157 6131 2689 191 26 48 chr15 32323047 32323613 -69056908 + MLT2B3 LTR ERVL 1 554 0 3006 118 66 23 chr15 32323613 32324100 -69056421 - L1MA9 LINE L1 -181 6131 5619 2828 10 0 3 chr15 32324271 32324583 -69055938 - AluYa5 SINE Alu 0 311 1 2670 156 62 6 chr15 32325380 32325913 -69054608 + L1M1 LINE L1 2165 2727 -4838 612 211 0 0 chr15 32327437 32327551 -69052970 - FLAM_C SINE Alu -18 115 2 301 290 174 13 chr15 32327584 32327739 -69052782 - L3 LINE CR1 -644 933 754 337 300 67 33 chr15 32327783 32327963 -69052558 - MIR SINE MIR -40 222 37 362 261 68 0 chr15 32328248 32328336 -69052185 - L2 LINE L2 -2 3311 3218 198 291 139 13 chr15 32328344 32328423 -69052098 - L3 LINE CR1 -1188 389 301 318 278 139 103 chr15 32328804 32329027 -69051494 - MIR SINE MIR -12 250 20 1508 172 28 28 chr15 32330453 32330744 -69049777 + AluJo SINE Alu 4 294 -18 498 271 13 26 chr15 32331116 32331271 -69049250 - MIR SINE MIR -37 225 73 262 247 113 31 chr15 32332292 32332389 -69048132 - MIR SINE MIR -118 144 40 9409 177 50 9 chr15 32333192 32335121 -69045400 - L1 LINE L1 -972 5174 3167 216 200 0 0 chr15 32335255 32335295 -69045226 + CT-rich Low_complexity Low_complexity 2 41 0 1117 257 217 0 chr15 32336324 32336830 -69043691 + LTR50 LTR ERVL 9 624 -171 366 159 0 0 chr15 32339907 32339976 -69040545 + A-rich Low_complexity Low_complexity 1 69 0 228 54 89 18 chr15 32340144 32340200 -69040321 + LTR66 LTR ERVL 380 439 -171 308 234 0 0 chr15 32340226 32340290 -69040231 - L1MC4 LINE L1 -1339 6703 6640 182 277 0 21 chr15 32341274 32341321 -69039200 + MIR SINE MIR 27 72 -136 683 336 33 35 chr15 32341606 32341676 -69038845 - L3 LINE CR1 -5 1572 1503 2172 108 23 7 chr15 32341676 32341982 -69038539 - AluY SINE Alu 0 311 1 683 336 33 35 chr15 32341982 32342307 -69038214 - L3 LINE CR1 -74 1503 1178 338 181 41 0 chr15 32342528 32342607 -69037914 + LTR50 LTR ERVL 443 795 0 1967 171 0 0 chr15 32342825 32343130 -69037391 + AluJb SINE Alu 1 305 -7 852 161 70 66 chr15 32343710 32343952 -69036569 + L1MA9 LINE L1 6026 6268 -44 195 230 97 88 chr15 32344907 32345020 -69035501 - MIR3 SINE MIR -87 121 8 2427 49 0 3 chr15 32345632 32345944 -69034577 - AluY SINE Alu 0 311 1 335 181 36 0 chr15 32346344 32346427 -69034094 - L1MB8 LINE L1 0 6178 6093 996 190 29 9 chr15 32347539 32347844 -69032677 + MLT1B LTR MaLR 1 390 0 24 0 0 0 chr15 32348384 32348408 -69032113 + AT_rich Low_complexity Low_complexity 1 24 0 502 276 88 54 chr15 32348522 32348909 -69031612 - L1ME4a LINE L1 -180 5941 5542 1100 156 0 60 chr15 32349028 32349227 -69031294 - AluJo SINE Alu -125 187 1 591 261 42 65 chr15 32349228 32349321 -69031200 - L1ME4a LINE L1 -745 5401 5307 2125 87 3 58 chr15 32349321 32349633 -69030888 - AluSg SINE Alu -15 295 1 591 261 42 65 chr15 32349633 32349849 -69030672 - L1ME4a LINE L1 -839 5307 5099 442 299 91 36 chr15 32349938 32350221 -69030300 - L1ME4a LINE L1 -1251 4895 4600 2082 87 66 0 chr15 32350590 32350876 -69029645 - AluSq SINE Alu -8 305 1 276 325 33 33 chr15 32351972 32352092 -69028429 - MIR SINE MIR -73 135 16 21 36 0 0 chr15 32352432 32352460 -69028061 + AT_rich Low_complexity Low_complexity 1 28 0 2140 104 12 12 chr15 32354442 32354770 -69025751 - L1MC1 LINE L1 0 6333 6006 230 299 47 28 chr15 32356502 32356609 -69023912 - MIR SINE MIR -71 191 83 754 165 0 0 chr15 32356662 32356783 -69023738 + FLAM_C SINE Alu 1 121 -22 1756 148 0 0 chr15 32357160 32357417 -69023104 - AluSx SINE Alu -55 257 1 1110 176 92 40 chr15 32357535 32357785 -69022736 - AluJo SINE Alu -49 263 1 548 256 57 17 chr15 32357927 32358103 -69022418 - MIR SINE MIR -14 248 66 227 208 21 0 chr15 32358213 32358261 -69022260 + CT-rich Low_complexity Low_complexity 2 50 0 243 0 0 0 chr15 32358267 32358294 -69022227 + (TG)n Simple_repeat Simple_repeat 2 28 0 405 0 0 0 chr15 32358661 32358706 -69021815 + (TG)n Simple_repeat Simple_repeat 2 46 0 1338 184 4 8 chr15 32358708 32358942 -69021579 - AluJo SINE Alu -36 276 44 186 43 0 0 chr15 32359381 32359404 -69021117 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 245 331 56 35 chr15 32361062 32361204 -69019317 - MIR3 SINE MIR -29 179 35 388 239 180 42 chr15 32361673 32361840 -69018681 + MIR3 SINE MIR 2 191 -17 228 86 0 0 chr15 32365290 32365325 -69015196 + (TG)n Simple_repeat Simple_repeat 2 36 0 395 294 19 9 chr15 32366004 32366149 -69014372 + MER5A DNA MER1_type 26 178 0 620 231 84 0 chr15 32366400 32366543 -69013978 + MER5A DNA MER1_type 35 189 0 1479 184 96 0 chr15 32367114 32367386 -69013135 + AluJo SINE Alu 1 298 -14 344 271 70 8 chr15 32367640 32367769 -69012752 - MIR SINE MIR -123 139 3 2370 82 0 13 chr15 32368900 32369205 -69011316 - AluSc SINE Alu -8 301 1 423 220 120 0 chr15 32369291 32369391 -69011130 - MIR SINE MIR -70 192 81 273 374 70 42 chr15 32369758 32370116 -69010405 + L2 LINE L2 2898 3265 -7 201 74 0 0 chr15 32370698 32370725 -69009796 + (GAA)n Simple_repeat Simple_repeat 2 28 0 258 81 0 0 chr15 32370987 32371024 -69009497 + (TG)n Simple_repeat Simple_repeat 1 37 0 354 216 10 62 chr15 32372671 32372768 -69007753 + MIR SINE MIR 92 183 -79 212 88 70 0 chr15 32372837 32372894 -69007627 + (TA)n Simple_repeat Simple_repeat 2 62 0 2206 112 0 3 chr15 32372895 32373190 -69007331 - AluSq SINE Alu -19 294 1 2432 101 0 0 chr15 32374563 32374870 -69005651 + AluSg SINE Alu 3 309 -1 1542 176 17 3 chr15 32375800 32376090 -69004431 + AluJb SINE Alu 1 294 -18 2345 75 0 0 chr15 32376092 32376402 -69004119 + AluY SINE Alu 1 310 0 2640 52 0 0 chr15 32377164 32377471 -69003050 - AluY SINE Alu -4 307 1 554 269 0 0 chr15 32379081 32379231 -69001290 - FLAM_A SINE Alu 0 133 1 331 222 56 79 chr15 32379379 32379505 -69001016 - MIR SINE MIR -74 188 66 1624 148 32 14 chr15 32380549 32380832 -68999689 + AluJb SINE Alu 5 292 -20 832 112 6 43 chr15 32381412 32381573 -68998948 - L1MA5 LINE L1 -5 6295 6141 183 250 0 21 chr15 32381867 32381915 -68998606 + MIR3 SINE MIR 159 205 -3 2131 157 5 22 chr15 32382363 32382732 -68997789 - MLT1A1 LTR MaLR -2 363 1 219 36 0 0 chr15 32383035 32383063 -68997458 + (TTG)n Simple_repeat Simple_repeat 2 29 0 22 35 0 0 chr15 32383471 32383500 -68997021 + AT_rich Low_complexity Low_complexity 1 29 0 229 304 58 72 chr15 32383819 32383957 -68996564 - L2 LINE L2 0 3272 3137 29 0 0 0 chr15 32384644 32384673 -68995848 + AT_rich Low_complexity Low_complexity 1 29 0 268 299 113 62 chr15 32384741 32385015 -68995506 - L2 LINE L2 -700 2614 2327 180 0 0 0 chr15 32385619 32385639 -68994882 + (TA)n Simple_repeat Simple_repeat 2 21 0 939 157 12 6 chr15 32388065 32388237 -68992284 + L1MB8 LINE L1 5997 6169 -9 1955 142 3 3 chr15 32388255 32388564 -68991957 - AluSx SINE Alu -3 309 1 651 129 0 10 chr15 32389607 32389708 -68990813 - HY3 scRNA scRNA -1 100 1 411 273 39 16 chr15 32389708 32389836 -68990685 + MIR SINE MIR 61 191 -71 181 116 47 70 chr15 32389944 32389987 -68990534 + MIR SINE MIR 218 259 -3 1718 205 32 20 chr15 32390010 32390410 -68990111 + L1ME1 LINE L1 5757 6161 -5 469 287 83 9 chr15 32391044 32391266 -68989255 - MIR3 SINE MIR -6 256 9 379 138 31 0 chr15 32392856 32392921 -68987600 + MER116 DNA Mariner 1 67 -13 1545 189 18 7 chr15 32393189 32393495 -68987026 - AluJb SINE Alu 0 310 2 652 235 107 11 chr15 32393691 32393878 -68986643 - MIR SINE MIR 0 262 58 395 276 32 8 chr15 32394044 32394167 -68986354 + L2 LINE L2 3187 3312 -1 207 0 0 0 chr15 32396428 32396451 -68984070 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr15 32398401 32398424 -68982097 + AT_rich Low_complexity Low_complexity 1 23 0 326 246 0 0 chr15 32398433 32398494 -68982027 + AluS SINE Alu 1 61 -242 38 39 0 0 chr15 32400299 32400351 -68980170 + AT_rich Low_complexity Low_complexity 1 52 0 703 213 0 0 chr15 32401580 32401707 -68978814 - FLAM_A SINE Alu -10 132 6 392 276 186 30 chr15 32401767 32401966 -68978555 + MIR SINE MIR 15 244 -18 214 260 78 0 chr15 32404831 32404908 -68975613 + MIR SINE MIR 67 149 -113 1676 173 14 14 chr15 32405164 32405459 -68975062 - AluJo SINE Alu -17 295 1 1565 130 0 0 chr15 32405471 32405687 -68974834 - AluJb SINE Alu -11 301 86 23 0 0 0 chr15 32405974 32405997 -68974524 + AT_rich Low_complexity Low_complexity 1 23 0 618 310 50 21 chr15 32406357 32406596 -68973925 - MIR SINE MIR -11 251 6 2354 75 10 0 chr15 32457699 32457994 -68922527 - AluY SINE Alu -13 298 1 321 191 29 15 chr15 32458084 32458152 -68922369 + MER94 DNA DNA 65 133 -1 413 179 64 0 chr15 32458180 32458258 -68922263 - MER45A DNA AcHobo 0 178 96 634 82 12 0 chr15 32458263 32458348 -68922173 + L1PA8A LINE L1 5434 5519 -612 4090 307 78 16 chr15 32458461 32460272 -68920249 + HERV16 LTR ERVL 1461 3491 -2046 2261 99 30 0 chr15 32460272 32460575 -68919946 + AluSx SINE Alu 1 312 0 4090 307 78 16 chr15 32460575 32460732 -68919789 + HERV16 LTR ERVL 3491 3637 -1900 613 364 42 32 chr15 32460761 32461355 -68919166 + HERV16 LTR ERVL 3723 4322 -1163 1170 187 103 0 chr15 32461379 32461593 -68918928 + AluSx SINE Alu 1 236 -76 5183 235 60 14 chr15 32461697 32463217 -68917304 - L1M4 LINE L1 -2057 4089 2499 1856 210 5 11 chr15 32463723 32464090 -68916431 - MLT1A1 LTR MaLR 0 365 1 21 89 0 0 chr15 32465056 32465112 -68915409 + AT_rich Low_complexity Low_complexity 1 56 0 23 33 0 0 chr15 32465416 32465446 -68915075 + AT_rich Low_complexity Low_complexity 1 30 0 221 239 30 0 chr15 32466805 32466872 -68913649 + A-rich Low_complexity Low_complexity 5 73 0 9566 89 13 32 chr15 32467598 32469014 -68911507 + HERVH LTR ERV1 1608 2995 -4718 5702 92 21 2 chr15 32468994 32469792 -68910729 + HERVH LTR ERV1 3140 3952 -3761 * 3944 113 0 0 chr15 32469790 32470322 -68910199 + HERVH LTR ERV1 4618 5149 -2564 * 1455 125 19 0 chr15 32470323 32470539 -68909982 + HERVH LTR ERV1 5600 5819 -1894 2525 83 53 13 chr15 32470539 32470914 -68909607 + HERVH LTR ERV1 7324 7713 0 2403 82 125 5 chr15 32470914 32471282 -68909239 + LTR7 LTR ERV1 1 412 -38 315 0 0 0 chr15 32471282 32471317 -68909204 + (A)n Simple_repeat Simple_repeat 1 35 0 350 229 55 0 chr15 32471384 32471493 -68909028 + L1MA9 LINE L1 6159 6273 -39 198 0 0 0 chr15 32473043 32473065 -68907456 + (A)n Simple_repeat Simple_repeat 1 22 0 244 295 0 26 chr15 32476312 32476390 -68904131 + G-rich Low_complexity Low_complexity 3 78 0 533 158 16 16 chr15 32476401 32476528 -68903993 + GA-rich Low_complexity Low_complexity 2 128 0 226 130 0 56 chr15 32477082 32477136 -68903385 + (CGG)n Simple_repeat Simple_repeat 2 52 0 225 132 0 0 chr15 32477343 32477381 -68903140 + (CACG)n Simple_repeat Simple_repeat 1 38 0 369 136 0 0 chr15 32477779 32477845 -68902676 + (TCC)n Simple_repeat Simple_repeat 1 66 0 249 159 0 0 chr15 32477967 32478011 -68902510 + A-rich Low_complexity Low_complexity 1 44 0 315 130 0 0 chr15 32478512 32478566 -68901955 + (TG)n Simple_repeat Simple_repeat 2 55 0 226 250 0 18 chr15 32478582 32478638 -68901883 + GA-rich Low_complexity Low_complexity 2 56 0 333 0 0 0 chr15 32479120 32479157 -68901364 + (TG)n Simple_repeat Simple_repeat 1 37 0 264 30 0 0 chr15 32479920 32479953 -68900568 + (GA)n Simple_repeat Simple_repeat 1 33 0 2516 64 0 6 chr15 32481179 32481535 -68898986 - AluSg SINE Alu 0 354 1 225 0 0 0 chr15 32484120 32484145 -68896376 + (TGG)n Simple_repeat Simple_repeat 1 25 0 291 306 0 36 chr15 32484400 32484511 -68896010 + CT-rich Low_complexity Low_complexity 1 107 0 185 0 40 0 chr15 32485416 32485441 -68895080 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 192 77 0 0 chr15 32485440 32485466 -68895055 + (CA)n Simple_repeat Simple_repeat 1 26 0 21 36 0 0 chr15 32486933 32486961 -68893560 + AT_rich Low_complexity Low_complexity 1 28 0 3660 82 2 0 chr15 32488968 32489459 -68891062 + L1PA10 LINE L1 5674 6165 -3 530 202 85 0 chr15 32489459 32489553 -68890968 - MER45 DNA AcHobo -76 102 1 198 91 0 0 chr15 32489732 32489765 -68890756 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 2069 130 6 22 chr15 32489781 32490097 -68890424 - AluSx SINE Alu -1 311 1 1588 176 7 35 chr15 32490315 32490632 -68889889 + AluJo SINE Alu 1 309 0 943 210 49 15 chr15 32490963 32491168 -68889353 + THE1C LTR MaLR 1 212 -163 978 152 35 30 chr15 32491190 32491387 -68889134 + THE1C LTR MaLR 178 375 0 1983 114 55 3 chr15 32491556 32491846 -68888675 - AluSq SINE Alu -8 305 1 2313 121 7 80 chr15 32492067 32492482 -68888039 + Tigger2 DNA MER2_type 2334 2718 0 180 282 0 0 chr15 32492550 32492589 -68887932 + L2 LINE L2 3160 3198 -74 249 33 0 0 chr15 32492647 32492669 -68887852 + (TA)n Simple_repeat Simple_repeat 1 52 0 249 33 0 0 chr15 32492669 32492699 -68887822 + (TA)n Simple_repeat Simple_repeat 2 31 0 307 314 24 47 chr15 32493960 32494129 -68886392 + MIR SINE MIR 77 241 -21 355 281 21 10 chr15 32494335 32494431 -68886090 + L2 LINE L2 3214 3310 -3 21 0 0 0 chr15 32494513 32494534 -68885987 + AT_rich Low_complexity Low_complexity 1 21 0 275 0 29 0 chr15 32495942 32495977 -68884544 + (CA)n Simple_repeat Simple_repeat 1 36 0 * 492 18 0 0 chr15 32495976 32496033 -68884488 + (GA)n Simple_repeat Simple_repeat 2 58 0 1241 134 0 5 chr15 32496658 32496844 -68883677 - AluSc SINE Alu -10 299 115 225 269 48 19 chr15 32496847 32496951 -68883570 + L1ME3A LINE L1 4936 5042 -1104 1536 154 56 19 chr15 32496952 32497218 -68883303 + MER1B DNA MER1_type 1 276 -63 1217 202 19 0 chr15 32497266 32497479 -68883042 + MER58A DNA MER1_type 8 224 0 259 306 18 9 chr15 32497518 32497629 -68882892 + L1ME3A LINE L1 5079 5190 -956 429 331 12 62 chr15 32497722 32497964 -68882557 + MLT1I LTR MaLR 59 288 -121 284 299 9 9 chr15 32498006 32498113 -68882408 + MLT1I LTR MaLR 281 387 -22 2283 262 74 20 chr15 32498159 32498996 -68881525 + L1ME3A LINE L1 5280 6161 -9 2082 122 86 21 chr15 32499026 32499363 -68881158 - THE1B LTR MaLR 0 364 6 357 24 0 0 chr15 32499416 32499458 -68881063 + (CA)n Simple_repeat Simple_repeat 1 42 0 23 0 0 0 chr15 32499624 32499647 -68880874 + AT_rich Low_complexity Low_complexity 1 23 0 282 308 43 8 chr15 32499801 32499918 -68880603 + L2 LINE L2 3189 3309 -4 289 264 126 0 chr15 32500663 32500750 -68879771 - MER5A DNA MER1_type -83 106 9 21 57 0 0 chr15 32500872 32500907 -68879614 + AT_rich Low_complexity Low_complexity 1 35 0 320 254 155 0 chr15 32502026 32502168 -68878353 - L1ME4a LINE L1 -2 6119 5956 10233 108 9 50 chr15 32502635 32504353 -68876168 - L1PA7 LINE L1 -792 5354 3708 5885 77 5 1 chr15 32504353 32505131 -68875390 + L1PA7 LINE L1 5366 6148 -6 1049 246 18 39 chr15 32505149 32505433 -68875088 - L1ME2 LINE L1 -17 6147 5870 198 0 0 0 chr15 32505434 32505456 -68875065 + (GA)n Simple_repeat Simple_repeat 2 23 0 * 252 0 0 0 chr15 32505455 32505483 -68875038 + (TG)n Simple_repeat Simple_repeat 2 29 0 2775 141 45 6 chr15 32505486 32505954 -68874567 - L1PB4 LINE L1 -13 6143 5658 438 258 0 0 chr15 32505956 32506045 -68874476 - FLAM_C SINE Alu -26 117 29 375 203 125 0 chr15 32506087 32506195 -68874326 - L1MD1 LINE L1 -412 5830 5737 1075 224 65 92 chr15 32506195 32506627 -68873894 + MLT1A1 LTR MaLR 1 365 0 1812 303 114 26 chr15 32506684 32507958 -68872563 - L1MCc LINE L1 -4891 1532 246 198 71 0 0 chr15 32508162 32508190 -68872331 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 21 0 0 0 chr15 32508346 32508367 -68872154 + AT_rich Low_complexity Low_complexity 1 21 0 405 0 0 0 chr15 32508635 32508680 -68871841 + (TA)n Simple_repeat Simple_repeat 1 45 0 1529 271 111 18 chr15 32508792 32509457 -68871064 + HAL1 LINE L1 592 1318 -1189 2218 127 3 0 chr15 32510279 32510587 -68869934 - AluSg SINE Alu -1 309 1 202 194 0 0 chr15 32511511 32511547 -68868974 + CT-rich Low_complexity Low_complexity 4 39 0 227 216 20 0 chr15 32512077 32512128 -68868393 + (TG)n Simple_repeat Simple_repeat 2 53 0 2391 94 0 0 chr15 32512250 32512548 -68867973 + AluSg SINE Alu 1 298 -12 5757 59 2 43 chr15 32512573 32513367 -68867154 + L1PA7 LINE L1 5390 6151 -3 2361 80 0 3 chr15 32513367 32513680 -68866841 + MER41A LTR ERV1 158 469 -85 281 233 11 0 chr15 32514417 32514507 -68866014 + (TA)n Simple_repeat Simple_repeat 2 92 0 6961 199 16 22 chr15 32514750 32516342 -68864179 + L1 LINE L1 3780 5361 -785 5766 68 4 15 chr15 32516337 32517266 -68863255 + L1PA8 LINE L1 5433 6171 -1 * 1808 190 52 3 chr15 32517266 32517632 -68862889 + L1PA16 LINE L1 5770 6155 -11 677 254 35 63 chr15 32517848 32518273 -68862248 - L1MC5 LINE L1 -60 7901 7489 290 239 0 0 chr15 32518577 32518648 -68861873 - L1ME2 LINE L1 -5 6159 6089 2475 195 19 60 chr15 32518656 32519221 -68861300 - MER44D DNA MER2_type 0 605 9 936 214 235 16 chr15 32519232 32519611 -68860910 - L1ME1 LINE L1 -86 6360 5899 4741 245 110 38 chr15 32519630 32521513 -68859008 - L1ME1 LINE L1 -1049 5377 3633 2560 147 2 81 chr15 32521513 32521927 -68858594 - L1PB4 LINE L1 -3 6153 5791 414 0 0 0 chr15 32521927 32521973 -68858548 + (CA)n Simple_repeat Simple_repeat 2 47 0 2560 147 2 81 chr15 32521973 32522103 -68858418 - L1PB4 LINE L1 -365 5791 5652 4741 245 110 38 chr15 32522103 32522180 -68858341 - L1ME1 LINE L1 -2793 3633 3563 2011 137 3 3 chr15 32522180 32522486 -68858035 - AluSx SINE Alu -5 307 2 4741 245 110 38 chr15 32522486 32522969 -68857552 - L1ME1 LINE L1 -2863 3563 2755 2184 171 40 7 chr15 32522975 32523403 -68857118 - L1MA8 LINE L1 -115 6176 5735 997 265 103 17 chr15 32523389 32524073 -68856448 - L1ME1 LINE L1 -3651 2775 2070 * 25 40 0 53 chr15 32524120 32524172 -68856349 + AT_rich Low_complexity Low_complexity 1 49 -23 3368 172 32 11 chr15 32524172 32524818 -68855703 + L1PA16 LINE L1 5500 6159 -7 25 40 0 53 chr15 32524818 32524841 -68855680 + AT_rich Low_complexity Low_complexity 49 72 0 21 0 0 0 chr15 32524853 32524874 -68855647 + AT_rich Low_complexity Low_complexity 1 21 0 700 294 73 34 chr15 32524876 32525463 -68855058 - L1ME1 LINE L1 -4604 2003 1196 2343 249 82 24 chr15 32525566 32526455 -68854066 + L1ME1 LINE L1 4095 5035 -1111 1977 185 19 0 chr15 32526462 32526835 -68853686 + L1ME1 LINE L1 5499 5878 -288 636 205 112 44 chr15 32526838 32527043 -68853478 + L1ME1 LINE L1 5934 6152 -14 349 288 65 47 chr15 32528090 32528260 -68852261 + MLT1K LTR MaLR 2 174 -414 292 350 24 24 chr15 32528566 32528772 -68851749 + L2 LINE L2 694 899 -2415 348 319 128 59 chr15 32528904 32529311 -68851210 - HAL1 LINE L1 -2045 462 28 249 425 16 8 chr15 32529612 32529739 -68850782 - L2 LINE L2 -22 3250 3123 21 0 0 0 chr15 32529753 32529774 -68850747 + AT_rich Low_complexity Low_complexity 1 21 0 228 382 132 14 chr15 32529874 32530094 -68850427 - L2 LINE L2 -209 3063 2818 220 336 144 8 chr15 32530181 32530306 -68850215 - L3b LINE CR1 -167 1416 1275 274 197 42 0 chr15 32531386 32531457 -68849064 + (TA)n Simple_repeat Simple_repeat 1 74 0 2241 113 16 34 chr15 32531759 32532139 -68848382 - THE1C LTR MaLR -2 373 1 903 276 75 4 chr15 32532897 32533136 -68847385 + MIR SINE MIR 1 256 -6 357 306 165 0 chr15 32533232 32533353 -68847168 + L2 LINE L2 3121 3261 -11 2305 68 0 4 chr15 32533376 32533657 -68846864 + AluY SINE Alu 7 286 -25 298 250 0 67 chr15 32533694 32533798 -68846723 + MIR SINE MIR 166 262 0 195 162 0 0 chr15 32534041 32534078 -68846443 + (CAA)n Simple_repeat Simple_repeat 2 38 0 304 308 50 22 chr15 32534084 32534266 -68846255 + Charlie8 DNA MER1_type 82 268 -2149 189 0 0 0 chr15 32534383 32534404 -68846117 + (TG)n Simple_repeat Simple_repeat 2 22 0 30 0 0 0 chr15 32534853 32534883 -68845638 + AT_rich Low_complexity Low_complexity 1 30 0 263 344 136 29 chr15 32535377 32535650 -68844871 + L3b LINE CR1 1248 1549 -34 207 0 0 0 chr15 32535903 32535926 -68844595 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 6425 85 13 2 chr15 32535948 32536885 -68843636 + L1PA11 LINE L1 5208 6158 -16 4998 89 7 4 chr15 32537335 32538041 -68842480 + L1PA8 LINE L1 5461 6168 -4 16549 159 24 7 chr15 32538078 32541079 -68839442 - L1P LINE L1 -1567 4579 1528 581 207 67 0 chr15 32541083 32541218 -68839303 - L1P LINE L1 -4493 1653 1510 1051 281 153 51 chr15 32541324 32541998 -68838523 - L2 LINE L2 -27 3286 2523 223 370 86 6 chr15 32542466 32542628 -68837893 + L2 LINE L2 2875 3049 -223 366 286 168 14 chr15 32542806 32543026 -68837495 - MIR SINE MIR 0 262 9 207 385 49 16 chr15 32544055 32544177 -68836344 + L2 LINE L2 3145 3270 -2 25 0 0 0 chr15 32544501 32544526 -68835995 + AT_rich Low_complexity Low_complexity 1 25 0 2238 198 67 4 chr15 32545043 32545518 -68835003 + MLT1D LTR MaLR 1 505 0 11228 157 22 8 chr15 32546054 32549277 -68831244 - L1MA2 LINE L1 -7 6297 3028 1439 149 156 32 chr15 32549448 32549763 -68830758 + MER47A DNA MER2_type 13 366 0 180 111 0 0 chr15 32549821 32549848 -68830673 - MIR SINE MIR -79 183 157 1790 158 4 4 chr15 32549959 32550238 -68830283 + AluSx SINE Alu 1 279 -33 27 62 0 0 chr15 32550345 32550393 -68830128 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr15 32550515 32550536 -68829985 + AT_rich Low_complexity Low_complexity 1 21 0 1674 182 7 0 chr15 32550905 32551196 -68829325 + MER57A LTR ERV1 111 403 0 258 32 0 0 chr15 32551235 32551266 -68829255 + (CA)n Simple_repeat Simple_repeat 2 32 0 323 182 0 0 chr15 32551271 32551326 -68829195 - L1ME LINE L1 -498 5672 5618 1626 197 45 30 chr15 32551546 32551942 -68828579 - MLT2F LTR ERVL 0 663 262 249 226 278 26 chr15 32551972 32552087 -68828434 - MLT2F LTR ERVL -517 146 3 251 89 0 89 chr15 32552146 32552237 -68828284 + Alu SINE Alu 252 337 0 2016 186 42 5 chr15 32552433 32552864 -68827657 - L1MB5 LINE L1 -9 6165 5719 382 209 12 58 chr15 32553023 32553109 -68827412 + MLT1J LTR MaLR 153 234 -277 734 153 0 0 chr15 32555854 32555978 -68824543 + MLT1D LTR MaLR 379 502 -3 451 298 94 28 chr15 32556086 32556341 -68824180 + L1ME LINE L1 5551 5822 -299 431 239 108 33 chr15 32556906 32557119 -68823402 + L1ME4a LINE L1 5534 5762 -359 333 228 61 26 chr15 32557124 32557238 -68823283 + L1ME4a LINE L1 5806 5923 -198 458 319 42 6 chr15 32559261 32559439 -68821082 - MIR SINE MIR -65 197 14 1615 200 0 30 chr15 32559656 32559956 -68820565 + AluJb SINE Alu 1 291 -21 1487 142 156 7 chr15 32560381 32560676 -68819845 - MER44D DNA MER2_type 0 609 1 2602 88 11 3 chr15 32560859 32561224 -68819297 - L1PB1 LINE L1 0 6151 5784 321 198 0 0 chr15 32561230 32561351 -68819170 + (TA)n Simple_repeat Simple_repeat 1 121 0 233 215 11 43 chr15 32561462 32561555 -68818966 - L1MC4 LINE L1 -1339 6703 6614 220 159 16 16 chr15 32561558 32561621 -68818900 + (TA)n Simple_repeat Simple_repeat 2 64 0 311 266 0 43 chr15 32561625 32561719 -68818802 + L1MC4 LINE L1 6614 6703 -1339 306 206 41 0 chr15 32561689 32561762 -68818759 + L1MCa LINE L1 1995 2070 -4356 * 336 176 0 0 chr15 32561762 32561830 -68818691 + (TA)n Simple_repeat Simple_repeat 1 68 0 227 91 136 0 chr15 32561852 32561896 -68818625 + L1P5 LINE L1 5742 5791 -360 3457 89 33 2 chr15 32561921 32562435 -68818086 - L1P5 LINE L1 -359 5792 5263 844 257 18 73 chr15 32562506 32562616 -68817905 - MIR SINE MIR 0 262 147 1963 150 0 11 chr15 32562616 32562902 -68817619 - AluJb SINE Alu -17 295 13 844 257 18 73 chr15 32562902 32563063 -68817458 - MIR SINE MIR -115 147 6 672 87 19 19 chr15 32563407 32563510 -68817011 + LTR7 LTR ERV1 346 448 -2 5406 115 22 19 chr15 32563512 32564830 -68815691 + HERVH LTR ERV1 1 1627 -6086 644 294 88 0 chr15 32564930 32565236 -68815285 - L1MCc LINE L1 -4954 1469 1137 375 230 61 131 chr15 32565578 32565922 -68814599 - L1MCc LINE L1 -5955 468 149 1347 99 31 0 chr15 32565937 32566129 -68814392 + AluSp SINE Alu 116 313 0 1964 206 50 3 chr15 32566194 32566577 -68813944 - MLT1D LTR MaLR 0 505 105 1130 72 0 0 chr15 32566582 32566721 -68813800 + AluSg/x SINE Alu 154 292 -17 467 176 8 92 chr15 32566721 32566759 -68813762 - MLT1D LTR MaLR -391 114 74 1821 107 24 134 chr15 32566759 32567178 -68813343 - THE1C LTR MaLR 0 375 3 467 176 8 92 chr15 32567178 32567258 -68813263 - MLT1D LTR MaLR -431 74 6 24 32 0 0 chr15 32567664 32567695 -68812826 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr15 32568295 32568326 -68812195 + AT_rich Low_complexity Low_complexity 1 31 0 457 313 6 6 chr15 32570026 32570202 -68810319 - L1ME LINE L1 -394 5727 5552 234 0 0 0 chr15 32570685 32570711 -68809810 + (TC)n Simple_repeat Simple_repeat 1 26 0 180 0 0 0 chr15 32571239 32571259 -68809262 + (T)n Simple_repeat Simple_repeat 1 20 0 239 261 72 0 chr15 32571528 32571597 -68808924 - L2 LINE L2 -309 2963 2890 642 221 101 13 chr15 32574493 32574651 -68805870 - MER91B DNA MER1_type -7 183 12 231 36 0 0 chr15 32574654 32574682 -68805839 + (T)n Simple_repeat Simple_repeat 1 28 0 3708 52 11 0 chr15 32575111 32575573 -68804948 + L1PA5 LINE L1 5686 6152 -2 281 288 182 0 chr15 32576450 32576582 -68803939 + L2 LINE L2 3117 3272 0 1650 77 9 0 chr15 32578895 32579115 -68801406 - L1PA8 LINE L1 -2 6170 5949 2063 125 34 3 chr15 32579236 32579532 -68800989 - AluSq SINE Alu -8 305 1 213 241 19 37 chr15 32580348 32580402 -68800119 - MIR3 SINE MIR -31 177 125 492 244 26 0 chr15 32580418 32580533 -68799988 - L2 LINE L2 0 3313 3196 730 314 115 74 chr15 32580533 32581203 -68799318 - L2 LINE L2 -253 3060 2419 4582 98 1 34 chr15 32581203 32581919 -68798602 - L1PA13 LINE L1 0 6163 5471 730 314 115 74 chr15 32581919 32582135 -68798386 - L2 LINE L2 -894 2419 2213 13419 79 12 2 chr15 32582135 32584774 -68795747 + L1PA7 LINE L1 3504 6154 0 730 314 115 74 chr15 32584774 32584945 -68795576 - L2 LINE L2 -1100 2213 1959 22 0 0 0 chr15 32585629 32585651 -68794870 + AT_rich Low_complexity Low_complexity 1 22 0 2131 128 0 0 chr15 32585656 32585945 -68794576 + AluSx SINE Alu 1 289 -23 981 137 6 48 chr15 32586305 32586473 -68794048 - FRAM SINE Alu -19 157 1 209 302 288 19 chr15 32586865 32587077 -68793444 + L3 LINE CR1 969 1237 -340 208 275 204 21 chr15 32587222 32587364 -68793157 + MIR SINE MIR 78 245 -17 180 0 0 0 chr15 32587374 32587394 -68793127 + (TTA)n Simple_repeat Simple_repeat 1 20 0 245 340 0 30 chr15 32587432 32587532 -68792989 + L3 LINE CR1 1431 1527 -50 27 49 0 0 chr15 32588061 32588102 -68792419 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr15 32593896 32593918 -68786603 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr15 32594172 32594196 -68786325 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr15 32594285 32594317 -68786204 + AT_rich Low_complexity Low_complexity 1 32 0 457 293 9 0 chr15 32594570 32594686 -68785835 - L2 LINE L2 0 3313 3197 345 222 35 58 chr15 32595100 32595271 -68785250 - Charlie7 DNA MER1_type -1 2611 2445 3684 77 0 0 chr15 32595271 32595766 -68784755 - L1P LINE L1 -893 5253 4759 2276 68 3 0 chr15 32595766 32596061 -68784460 + L1PA7 LINE L1 5856 6151 -3 834 237 98 15 chr15 32596241 32596507 -68784014 + L2 LINE L2 3021 3308 -5 282 225 38 25 chr15 32596507 32596587 -68783934 - Charlie7 DNA MER1_type -1962 650 570 634 294 108 19 chr15 32596644 32597022 -68783499 - Charlie7 DNA MER1_type -2149 463 52 188 269 51 26 chr15 32597298 32597376 -68783145 + L3b LINE CR1 1279 1358 -225 683 330 107 17 chr15 32600497 32600668 -68779853 - L2 LINE L2 -55 3258 3104 345 93 0 0 chr15 32600668 32600722 -68779799 + (TG)n Simple_repeat Simple_repeat 2 55 0 683 330 107 17 chr15 32600722 32601040 -68779481 - L2 LINE L2 -209 3104 2727 706 262 53 84 chr15 32601079 32601434 -68779087 - L2 LINE L2 -943 2371 2028 1178 125 5 2 chr15 32601434 32601636 -68778885 + L1PB2 LINE L1 5755 5954 -197 386 229 183 7 chr15 32601682 32601757 -68778764 - L2 LINE L2 -1437 1877 1817 2039 105 43 0 chr15 32601757 32602033 -68778488 + AluSg SINE Alu 6 293 -17 386 229 183 7 chr15 32602033 32602110 -68778411 - L2 LINE L2 -1497 1817 1698 1367 188 29 36 chr15 32602232 32602602 -68777919 - MLT2B1 LTR ERVL -70 450 1 656 323 100 18 chr15 32602695 32603026 -68777495 - L2 LINE L2 -2074 1240 883 2524 133 36 5 chr15 32603225 32603638 -68776883 + MSTB LTR MaLR 1 426 0 204 135 0 0 chr15 32604471 32604508 -68776013 + (TG)n Simple_repeat Simple_repeat 1 37 0 186 71 0 0 chr15 32604839 32604867 -68775654 + (CAAT)n Simple_repeat Simple_repeat 3 30 0 4920 256 42 29 chr15 32605072 32605537 -68774984 - L1PA12 LINE L1 -4741 2843 2385 195 69 0 0 chr15 32605537 32605566 -68774955 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4920 256 42 29 chr15 32605566 32606866 -68773655 - L1PA12 LINE L1 -5199 2385 1 225 0 0 0 chr15 32607203 32607228 -68773293 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 7506 31 6 0 chr15 32607229 32608704 -68771817 - L1PA3 LINE L1 -3 6152 4674 840 230 0 28 chr15 32608710 32608941 -68771580 - MLT1E2 LTR MaLR -288 217 1 22 0 0 0 chr15 32611291 32611313 -68769208 + AT_rich Low_complexity Low_complexity 1 22 0 250 240 0 0 chr15 32611739 32611789 -68768732 + L2 LINE L2 3210 3259 -13 877 159 0 79 chr15 32612241 32612430 -68768091 - MER20 DNA MER1_type 0 219 46 1747 187 33 30 chr15 32612451 32612815 -68767706 - MLT1A1 LTR MaLR 0 365 1 479 183 21 0 chr15 32612815 32612908 -68767613 - MLT1A1-int LTR MaLR 0 1735 1641 4556 219 32 15 chr15 32612914 32613871 -68766650 - MLT1A1-int LTR MaLR -761 974 1 1667 194 36 31 chr15 32613871 32614231 -68766290 - MLT1A1 LTR MaLR 0 365 4 693 297 50 38 chr15 32614384 32614623 -68765898 - MIR SINE MIR 0 262 21 192 292 191 38 chr15 32615006 32615125 -68765396 + MIR SINE MIR 20 119 -143 5962 132 57 69 chr15 32615125 32616369 -68764152 - Tigger3b DNA MER2_type -1 1230 2 192 292 191 38 chr15 32616369 32616458 -68764063 + MIR SINE MIR 119 260 -2 21 57 0 0 chr15 32616465 32616500 -68764021 + AT_rich Low_complexity Low_complexity 1 35 0 201 208 0 21 chr15 32617317 32617365 -68763156 + (TA)n Simple_repeat Simple_repeat 1 47 0 342 301 97 26 chr15 32617474 32617848 -68762673 - L1MC/D LINE L1 -297 5824 5437 313 344 166 31 chr15 32618284 32618831 -68761690 - L2 LINE L2 -705 2609 1989 23 0 0 0 chr15 32618833 32618856 -68761665 + AT_rich Low_complexity Low_complexity 1 23 0 2011 95 4 0 chr15 32618861 32619125 -68761396 + AluSc SINE Alu 1 265 -44 519 301 77 42 chr15 32619727 32620248 -68760273 - L1ME3A LINE L1 -343 5827 5289 3264 210 32 19 chr15 32620415 32620614 -68759907 - L1MB8 LINE L1 -6 6172 5974 1551 244 139 16 chr15 32620614 32621268 -68759253 - L1MC4 LINE L1 -777 5369 5243 262 59 0 0 chr15 32621270 32621304 -68759217 - MLT2B2 LTR ERVL -15 538 505 2106 199 49 42 chr15 32621348 32621820 -68758701 - MLT2B2 LTR ERVL -40 475 1 1519 162 72 64 chr15 32621820 32622208 -68758313 - L1MC4 LINE L1 -890 5256 4866 804 116 6 92 chr15 32622273 32622437 -68758084 + L1PA8 LINE L1 6023 6172 0 238 262 48 0 chr15 32622676 32622760 -68757761 - L1MB8 LINE L1 -1071 5075 4988 427 340 37 51 chr15 32624738 32625032 -68755489 + HAL1b LINE L1 517 806 -542 1543 211 3 3 chr15 32625398 32625706 -68754815 + AluJo SINE Alu 3 310 -2 28070 79 4 43 chr15 32625969 32630610 -68749911 + L1P3 LINE L1 1331 5787 -385 2312 72 0 20 chr15 32630611 32630915 -68749606 + AluY SINE Alu 1 298 -13 1056 241 38 3 chr15 32630920 32631265 -68749256 + L1M4 LINE L1 2912 3268 -2878 876 302 38 7 chr15 32631269 32631696 -68748825 + L1M4 LINE L1 4068 4507 -1639 1396 62 0 0 chr15 32631733 32631910 -68748611 - L1PA7 LINE L1 -5 6149 5973 251 266 26 52 chr15 32632106 32632298 -68748223 + L1M4 LINE L1 2836 3022 -3124 43859 41 2 1 chr15 32632374 32638522 -68741999 - L1PA3 LINE L1 -4 6151 1 291 68 0 23 chr15 32638539 32638583 -68741938 + L1PB4 LINE L1 5441 5483 -673 1342 199 12 0 chr15 32638585 32638831 -68741690 + AluJo SINE Alu 38 286 -26 3785 156 23 0 chr15 32638850 32639499 -68741022 + L1PB4 LINE L1 5450 6113 -43 6431 174 33 32 chr15 32639599 32640872 -68739649 - L1P LINE L1 -4862 1284 11 13840 157 28 46 chr15 32640883 32643755 -68736766 - L1P LINE L1 -3317 2829 12 1376 253 67 0 chr15 32643782 32644229 -68736292 - L1MCb LINE L1 -3241 3323 2847 3133 263 63 45 chr15 32644280 32644558 -68735963 - L1MCb LINE L1 -4010 2735 2463 198 0 0 0 chr15 32644558 32644580 -68735941 + (TA)n Simple_repeat Simple_repeat 2 23 0 2278 92 0 0 chr15 32644580 32644872 -68735649 - AluY SINE Alu -19 292 1 3133 263 63 45 chr15 32644872 32645498 -68735023 - L1MCb LINE L1 -4282 2463 1849 16061 37 0 0 chr15 32645498 32648235 -68732286 + L1PA4 LINE L1 3427 6172 0 3133 263 63 45 chr15 32648235 32649871 -68730650 - L1MCb LINE L1 -4896 1849 9 341 308 8 0 chr15 32650273 32650390 -68730131 + L1ME LINE L1 5669 5786 -335 310 316 35 0 chr15 32650399 32650513 -68730008 - L1ME4a LINE L1 -206 5915 5798 23 68 0 0 chr15 32651476 32651520 -68729001 + AT_rich Low_complexity Low_complexity 1 44 0 859 301 59 12 chr15 32651818 32652140 -68728381 - LTR16A LTR ERVL -98 352 16 348 292 71 24 chr15 32652250 32652418 -68728103 - HERVL LTR ERVL -699 4955 4780 348 323 0 0 chr15 32652494 32652593 -68727928 - HERVL LTR ERVL -1110 4654 4556 745 284 29 10 chr15 32652679 32652887 -68727634 + MLT1E LTR MaLR 382 593 0 1417 293 108 18 chr15 32653049 32653550 -68726971 - HERVL LTR ERVL -3861 1135 590 614 285 27 27 chr15 32653611 32653832 -68726689 - HERVL LTR ERVL -4501 495 275 718 163 32 0 chr15 32653835 32653958 -68726563 + FLAM_C SINE Alu 1 127 -16 649 326 154 18 chr15 32654205 32654588 -68725933 - LTR16A LTR ERVL 0 450 16 3070 110 43 4 chr15 32658569 32659034 -68721487 - L1PA16 LINE L1 -1 6165 5683 2185 107 3 3 chr15 32661102 32661392 -68719129 + AluSx SINE Alu 2 291 -21 183 129 0 0 chr15 32661397 32661428 -68719093 + (TA)n Simple_repeat Simple_repeat 2 32 0 24 85 0 0 chr15 32661749 32661808 -68718713 + AT_rich Low_complexity Low_complexity 1 59 0 2746 234 87 66 chr15 32664159 32665358 -68715163 - MER69B DNA AcHobo 0 1226 3 381 328 86 0 chr15 32665365 32665493 -68715028 + MIR SINE MIR 14 152 -110 1499 134 34 7 chr15 32665498 32665767 -68714754 + AluSx SINE Alu 1 276 -36 1074 167 22 45 chr15 32666398 32666692 -68713829 + AluSx SINE Alu 21 308 0 1177 192 45 10 chr15 32667068 32667380 -68713141 - MER33 DNA MER1_type 0 324 2 180 0 0 0 chr15 32669157 32669177 -68711344 + (T)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr15 32670279 32670302 -68710219 + AT_rich Low_complexity Low_complexity 1 23 0 1027 80 34 11 chr15 32671784 32671960 -68708561 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chr15 32673456 32673477 -68707044 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr15 32674769 32674793 -68705728 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chr15 32675979 32676008 -68704513 + AT_rich Low_complexity Low_complexity 1 29 0 905 201 0 0 chr15 32676015 32676204 -68704317 + AluJb SINE Alu 141 312 0 442 279 52 22 chr15 32677015 32677151 -68703370 - MIR3 SINE MIR -49 159 20 2409 70 7 3 chr15 32677643 32677942 -68702579 + AluSx SINE Alu 2 301 -11 2400 66 7 0 chr15 32678401 32678704 -68701817 + AluY SINE Alu 1 305 -6 240 35 0 0 chr15 32679216 32679245 -68701276 + (CA)n Simple_repeat Simple_repeat 1 29 0 21 36 0 0 chr15 32679301 32679329 -68701192 + AT_rich Low_complexity Low_complexity 1 28 0 288 67 89 0 chr15 32679348 32679393 -68701128 - MADE1 DNA Mariner 0 80 32 477 285 15 68 chr15 32681453 32681678 -68698843 + MIR SINE MIR 40 246 -16 657 199 242 55 chr15 32681898 32682224 -68698297 + MLT1L LTR MaLR 225 611 -4 2436 89 0 3 chr15 32682419 32682733 -68697788 - AluSp SINE Alu 0 313 1 621 106 0 0 chr15 32684580 32684665 -68695856 + AluJ/FLAM SINE Alu 3 87 -225 321 282 98 81 chr15 32684708 32684904 -68695617 + L1ME3A LINE L1 3469 3660 -2486 243 0 0 0 chr15 32684904 32684931 -68695590 + (TG)n Simple_repeat Simple_repeat 2 28 0 2333 60 0 0 chr15 32684931 32685214 -68695307 - AluY SINE Alu -28 283 1 321 282 98 81 chr15 32685214 32685686 -68694835 + L1ME3A LINE L1 3659 4150 -1996 274 284 0 21 chr15 32685700 32685767 -68694754 + GA-rich Low_complexity Low_complexity 4 70 -26 1838 177 0 3 chr15 32685767 32686078 -68694443 + AluJb SINE Alu 1 310 -2 274 284 0 21 chr15 32686078 32686105 -68694416 + GA-rich Low_complexity Low_complexity 70 96 0 239 192 96 14 chr15 32686105 32686178 -68694343 + L1ME3A LINE L1 4151 4229 -1917 908 280 94 39 chr15 32686266 32687263 -68693258 + L1ME3A LINE L1 4912 5962 -208 22 56 0 0 chr15 32687310 32687346 -68693175 + AT_rich Low_complexity Low_complexity 1 36 0 213 308 13 13 chr15 32687793 32687871 -68692650 + GA-rich Low_complexity Low_complexity 3 80 0 27 81 0 0 chr15 32688062 32688124 -68692397 + AT_rich Low_complexity Low_complexity 1 62 0 325 284 71 33 chr15 32688268 32688451 -68692070 + L1ME LINE L1 5598 5787 -334 2281 75 3 17 chr15 32688655 32688950 -68691571 - AluY SINE Alu -20 291 1 189 107 0 0 chr15 32689290 32689318 -68691203 + (CA)n Simple_repeat Simple_repeat 1 28 0 341 318 7 52 chr15 32690842 32690996 -68689525 + MIR3 SINE MIR 17 163 -45 358 213 0 64 chr15 32691021 32691115 -68689406 - MIR SINE MIR -13 249 162 688 199 12 30 chr15 32691115 32691281 -68689240 - LTR33 LTR ERVL 0 521 359 235 257 27 0 chr15 32691437 32691511 -68689010 - LTR33 LTR ERVL -443 78 3 263 394 15 0 chr15 32691517 32691654 -68688867 - MIR SINE MIR -106 156 18 4182 227 66 17 chr15 32693809 32695474 -68685047 + L1MC3 LINE L1 4527 5403 -743 315 291 89 45 chr15 32695539 32695718 -68684803 + L1M4 LINE L1 5271 5457 -717 689 77 39 0 chr15 32695844 32695948 -68684573 + L1PB1 LINE L1 6042 6149 -2 26 30 0 0 chr15 32696327 32696360 -68684161 + AT_rich Low_complexity Low_complexity 1 33 0 364 236 110 24 chr15 32697422 32697549 -68682972 - L2 LINE L2 -88 3225 3088 191 393 47 0 chr15 32698765 32698872 -68681649 + L2 LINE L2 2903 3014 -258 218 220 20 0 chr15 32699474 32699524 -68680997 + CT-rich Low_complexity Low_complexity 2 52 0 2297 88 7 0 chr15 32700324 32700621 -68679900 + AluY SINE Alu 1 299 -12 204 365 43 17 chr15 32700997 32701112 -68679409 + MIR3 SINE MIR 10 127 -81 270 0 0 0 chr15 32701171 32701201 -68679320 + (TA)n Simple_repeat Simple_repeat 1 30 0 450 346 54 8 chr15 32702211 32702451 -68678070 - L2 LINE L2 -1305 2009 1759 2142 105 3 0 chr15 32702618 32702913 -68677608 + AluSq SINE Alu 1 296 -17 3634 42 7 0 chr15 32703097 32703545 -68676976 + L1PA5 LINE L1 5697 6147 -7 309 171 26 43 chr15 32704326 32704480 -68676041 + (TTATA)n Simple_repeat Simple_repeat 1 151 0 358 282 160 0 chr15 32704977 32705108 -68675413 + HAL1 LINE L1 1454 1605 -902 21 0 0 0 chr15 32705968 32705989 -68674532 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr15 32706295 32706325 -68674196 + (CA)n Simple_repeat Simple_repeat 2 31 0 197 291 222 17 chr15 32708823 32708940 -68671581 + MIR SINE MIR 22 162 -100 2580 181 50 2 chr15 32708948 32709467 -68671054 - L1MC3 LINE L1 -3 7782 7239 584 146 9 0 chr15 32709621 32709731 -68670790 + L1MA10 LINE L1 6223 6333 -1 240 237 92 0 chr15 32710106 32710182 -68670339 + L2 LINE L2 3231 3313 0 26 0 0 0 chr15 32710210 32710236 -68670285 + AT_rich Low_complexity Low_complexity 1 26 0 23 86 0 0 chr15 32713010 32713068 -68667453 + AT_rich Low_complexity Low_complexity 1 58 0 266 336 55 20 chr15 32713784 32713930 -68666591 + MIR3 SINE MIR 34 184 -24 268 327 36 36 chr15 32716602 32716825 -68663696 + L2 LINE L2 2848 3070 -202 2054 137 0 0 chr15 32716825 32717155 -68663366 - AluSx SINE Alu 0 330 1 376 274 59 0 chr15 32717280 32717382 -68663139 + L2 LINE L2 3197 3304 -9 253 371 13 33 chr15 32717764 32717915 -68662606 + MIR SINE MIR 16 163 -99 198 245 31 102 chr15 32717927 32718025 -68662496 + L2 LINE L2 3223 3313 0 461 250 19 9 chr15 32719142 32719250 -68661271 + MIR SINE MIR 119 227 -35 22 0 0 0 chr15 32720156 32720178 -68660343 + AT_rich Low_complexity Low_complexity 1 22 0 6357 24 1 0 chr15 32721061 32721805 -68658716 - L1PA4 LINE L1 -4 6151 5407 1888 139 60 3 chr15 32722148 32722465 -68658056 - MER2 DNA MER2_type -10 335 1 243 0 0 0 chr15 32724350 32724377 -68656144 + (CA)n Simple_repeat Simple_repeat 2 28 0 648 286 36 18 chr15 32724910 32725134 -68655387 + MIR SINE MIR 34 261 -1 216 182 0 0 chr15 32725834 32725878 -68654643 + T-rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr15 32727720 32727741 -68652780 + AT_rich Low_complexity Low_complexity 1 21 0 453 97 0 0 chr15 32729849 32729921 -68650600 + (TA)n Simple_repeat Simple_repeat 2 73 0 198 290 0 29 chr15 32730373 32730442 -68650079 - MIR SINE MIR -91 171 105 189 0 0 0 chr15 32731041 32731062 -68649459 + (A)n Simple_repeat Simple_repeat 1 21 0 2075 170 46 12 chr15 32731567 32731978 -68648543 - L1MC3 LINE L1 0 7785 7361 336 295 143 0 chr15 32731980 32732085 -68648436 - MIR SINE MIR -70 192 73 291 315 22 11 chr15 32732870 32732962 -68647559 + MER5B DNA MER1_type 37 129 -49 188 365 40 0 chr15 32733044 32733118 -68647403 - L2 LINE L2 -52 3220 3144 375 296 252 0 chr15 32733548 32733683 -68646838 - MLT1G1 LTR MaLR -45 550 382 2624 96 6 3 chr15 32733977 32734340 -68646181 - THE1B LTR MaLR 0 364 1 234 149 0 21 chr15 32734442 32734489 -68646032 - L1MC4 LINE L1 -1339 6703 6658 249 313 24 0 chr15 32734522 32734605 -68645916 - MLT1F1 LTR MaLR -456 111 27 491 231 100 44 chr15 32734900 32735060 -68645461 - MIR SINE MIR -66 196 28 2474 45 3 7 chr15 32735212 32735521 -68645000 - AluY SINE Alu -3 308 1 245 250 0 0 chr15 32736982 32737034 -68643487 + MIR SINE MIR 102 153 -109 5733 119 21 7 chr15 32737334 32738361 -68642160 - L1PA16 LINE L1 -11 6155 5121 319 275 85 58 chr15 32738655 32738844 -68641677 + MIR SINE MIR 69 262 0 292 315 34 60 chr15 32740165 32740314 -68640207 - MIR SINE MIR -6 256 112 181 269 201 15 chr15 32740781 32740915 -68639606 - MIR3 SINE MIR -23 185 27 210 118 0 0 chr15 32741111 32741145 -68639376 + (CTA)n Simple_repeat Simple_repeat 3 36 0 813 269 8 67 chr15 32741563 32741831 -68638690 + MIR SINE MIR 3 254 -8 248 321 98 9 chr15 32742517 32742629 -68637892 - MIR SINE MIR -121 141 20 302 218 55 9 chr15 32742938 32743048 -68637473 - MER113 DNA MER1_type? -372 149 35 1448 198 20 23 chr15 32743061 32743404 -68637117 - Charlie4a DNA MER1_type -119 389 48 248 341 12 0 chr15 32743432 32743514 -68637007 + MIR SINE MIR 39 121 -141 18161 50 12 3 chr15 32745389 32748508 -68632013 - L1PA5 LINE L1 -1 6153 3014 6169 50 14 1 chr15 32748508 32749309 -68631212 + L1PA5 LINE L1 2177 2987 -3159 237 219 19 9 chr15 32749671 32749776 -68630745 + (TA)n Simple_repeat Simple_repeat 2 107 0 297 354 31 16 chr15 32750061 32750188 -68630333 - L1MEd LINE L1 -5765 354 226 411 38 0 0 chr15 32750518 32750571 -68629950 + (CA)n Simple_repeat Simple_repeat 2 54 0 600 211 26 20 chr15 32751362 32751514 -68629007 + MIR SINE MIR 110 262 0 12032 31 0 1 chr15 32752192 32754399 -68626122 - L1PA3 LINE L1 0 6155 3950 21 0 0 0 chr15 32754783 32754804 -68625717 + AT_rich Low_complexity Low_complexity 1 21 0 1402 242 122 27 chr15 32754848 32755324 -68625197 - L1MD3 LINE L1 -10 7985 7465 5365 158 37 40 chr15 32755328 32755429 -68625092 - L1PB3 LINE L1 -1 6153 6053 1912 169 122 10 chr15 32755429 32755814 -68624707 - MSTA LTR MaLR 0 428 1 9236 146 6 42 chr15 32755814 32757450 -68623071 - MSTA-int LTR MaLR 0 1580 3 1682 161 177 11 chr15 32757452 32757819 -68622702 - MSTA LTR MaLR 0 428 1 5365 158 37 40 chr15 32757819 32759640 -68620881 - L1PB3 LINE L1 -101 6053 4224 2849 229 39 64 chr15 32759640 32761137 -68619384 - L1MC4 LINE L1 -655 7387 5923 430 291 126 71 chr15 32762247 32762725 -68617796 + L2 LINE L2 2400 2903 -411 304 301 39 10 chr15 32762889 32762992 -68617529 + L2 LINE L2 3208 3313 0 188 284 125 11 chr15 32764154 32764242 -68616279 - MIR SINE MIR -46 216 119 789 279 73 5 chr15 32765435 32765654 -68614867 - MIR SINE MIR -25 237 4 640 143 25 28 chr15 32766202 32766358 -68614163 - MSTA LTR MaLR 0 428 221 41912 38 25 2 chr15 32766358 32772360 -68608161 - L1PA2 LINE L1 -11 6144 1 1493 179 8 0 chr15 32772361 32772612 -68607909 - MSTA LTR MaLR -174 254 2 1581 272 82 18 chr15 32772613 32773124 -68607397 + MLT1G1 LTR MaLR 25 568 -27 187 283 33 0 chr15 32773406 32773466 -68607055 + L3b LINE CR1 1310 1371 -212 29 47 0 0 chr15 32774002 32774045 -68606476 + AT_rich Low_complexity Low_complexity 1 43 0 27298 124 16 74 chr15 32774743 32779905 -68600616 + L1P LINE L1 12 4875 -1271 1340 128 0 11 chr15 32779905 32780163 -68600358 - GSAT Satellite centromeric 0 255 1 6949 52 12 1 chr15 32780163 32781408 -68599113 + L1PA7 LINE L1 4900 6154 0 993 166 125 30 chr15 32782369 32782664 -68597857 + MER33 DNA MER1_type 2 324 0 445 239 189 35 chr15 32782664 32782865 -68597656 + MIR SINE MIR 17 248 -14 194 330 165 10 chr15 32782872 32782969 -68597552 + MIR SINE MIR 31 142 -66 476 252 17 0 chr15 32783036 32783151 -68597370 + MIR3 SINE MIR 91 207 -1 182 376 0 12 chr15 32785611 32785696 -68594825 + MIR SINE MIR 117 200 -62 21 0 0 0 chr15 32785782 32785803 -68594718 + AT_rich Low_complexity Low_complexity 1 21 0 423 296 17 41 chr15 32785846 32786018 -68594503 - MIR SINE MIR -73 189 22 1802 150 158 21 chr15 32786059 32786433 -68594088 - MSTA LTR MaLR 0 428 4 22 56 0 0 chr15 32786897 32786933 -68593588 + AT_rich Low_complexity Low_complexity 1 36 0 247 62 0 42 chr15 32787210 32787258 -68593263 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr15 32788385 32788407 -68592114 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr15 32788696 32788721 -68591800 + AT_rich Low_complexity Low_complexity 1 25 0 249 33 0 0 chr15 32789354 32789384 -68591137 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 378 0 0 0 chr15 32789383 32789425 -68591096 + (CA)n Simple_repeat Simple_repeat 1 42 0 181 107 0 0 chr15 32789628 32789656 -68590865 + MIR SINE MIR 110 137 -71 490 263 0 8 chr15 32789730 32789863 -68590658 + MER94 DNA DNA 1 132 -2 682 171 36 0 chr15 32790279 32790390 -68590131 + FLAM_C SINE Alu 2 116 -17 363 73 0 0 chr15 32790390 32790445 -68590076 + (GA)n Simple_repeat Simple_repeat 1 55 0 23 0 0 0 chr15 32790627 32790650 -68589871 + AT_rich Low_complexity Low_complexity 1 23 0 3835 94 63 0 chr15 32791292 32791618 -68588903 - L1PB1 LINE L1 -1 6150 5771 231 36 0 0 chr15 32791618 32791646 -68588875 + (TG)n Simple_repeat Simple_repeat 2 29 0 3835 94 63 0 chr15 32791646 32791892 -68588629 - L1PB1 LINE L1 -380 5771 5542 815 214 22 16 chr15 32792392 32792574 -68587947 - AluJo SINE Alu -23 289 107 4317 134 31 53 chr15 32792801 32793615 -68586906 + L1PB4 LINE L1 5360 6155 -1 21 0 0 0 chr15 32793910 32793931 -68586590 + AT_rich Low_complexity Low_complexity 1 21 0 42652 35 22 1 chr15 32793989 32800014 -68580507 + L1PA3 LINE L1 1 6155 0 201 94 0 75 chr15 32800401 32800454 -68580067 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 286 309 28 45 chr15 32801827 32802063 -68578458 - LTR16A LTR ERVL -9 441 180 28 61 0 0 chr15 32802492 32802541 -68577980 + AT_rich Low_complexity Low_complexity 1 49 0 322 336 113 31 chr15 32802586 32802878 -68577643 - L1ME LINE L1 -454 5667 5352 38 0 0 0 chr15 32803108 32803146 -68577375 + AT_rich Low_complexity Low_complexity 1 38 0 261 0 0 0 chr15 32803477 32803506 -68577015 + (TA)n Simple_repeat Simple_repeat 2 30 0 322 290 0 21 chr15 32803506 32803599 -68576922 - L1MC4 LINE L1 -1339 6703 6613 2220 205 66 12 chr15 32804016 32804513 -68576008 - L1ME1 LINE L1 -15 6151 5628 1243 119 0 0 chr15 32804864 32805032 -68575489 - AluSg/x SINE Alu -24 288 121 2031 133 0 0 chr15 32805083 32805362 -68575159 - AluSg SINE Alu -31 279 1 22 35 0 0 chr15 32805367 32805396 -68575125 + AT_rich Low_complexity Low_complexity 1 29 0 333 348 7 15 chr15 32805514 32805649 -68574872 - L2 LINE L2 0 3313 3180 195 69 0 0 chr15 32805653 32805682 -68574839 + (CA)n Simple_repeat Simple_repeat 2 30 0 645 322 33 0 chr15 32805784 32805995 -68574526 - L2 LINE L2 -1175 2139 1922 198 0 0 0 chr15 32805996 32806018 -68574503 + (TA)n Simple_repeat Simple_repeat 2 23 0 326 252 135 0 chr15 32806053 32806164 -68574357 - MIR SINE MIR -35 227 102 2363 62 0 0 chr15 32806389 32806678 -68573843 - AluY SINE Alu -21 290 2 329 239 145 10 chr15 32806836 32807009 -68573512 - L1 LINE L1 -2212 3934 3743 1103 205 114 7 chr15 32807810 32808083 -68572438 - AluJo SINE Alu 0 302 1 29 28 0 0 chr15 32808346 32808382 -68572139 + AT_rich Low_complexity Low_complexity 1 36 0 929 92 23 0 chr15 32808677 32808808 -68571713 - L1PA8 LINE L1 -6 6166 6033 269 29 0 0 chr15 32808810 32808844 -68571677 + L1PA8 LINE L1 6005 6038 -134 30 27 0 0 chr15 32809695 32809732 -68570789 + AT_rich Low_complexity Low_complexity 1 37 0 223 304 116 27 chr15 32810373 32810485 -68570036 + L2 LINE L2 2896 3017 -255 186 284 15 45 chr15 32810676 32810743 -68569778 + L2 LINE L2 3249 3313 0 4769 175 27 15 chr15 32811313 32812827 -68567694 - L1PB4 LINE L1 -7 6149 4609 231 346 29 59 chr15 32813107 32813206 -68567315 + L2 LINE L2 2948 3043 -229 1588 181 10 16 chr15 32813206 32813520 -68567001 + AluJo SINE Alu 1 312 0 231 346 29 59 chr15 32813520 32813556 -68566965 + L2 LINE L2 3043 3079 -193 22 0 0 0 chr15 32814959 32814981 -68565540 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr15 32815377 32815404 -68565117 + AT_rich Low_complexity Low_complexity 1 27 0 2048 158 0 0 chr15 32816397 32816695 -68563826 - AluSg SINE Alu -12 298 1 478 286 71 43 chr15 32817012 32817292 -68563229 - Tigger8 DNA MER2_type -91 575 288 719 183 0 8 chr15 32817370 32817496 -68563025 + FLAM_C SINE Alu 1 125 -8 789 188 0 0 chr15 32817614 32817752 -68562769 + FLAM_C SINE Alu 6 143 0 2287 122 42 3 chr15 32818555 32818909 -68561612 + THE1C LTR MaLR 8 375 0 10122 113 48 13 chr15 32818909 32820435 -68560086 + THE1C-int LTR MaLR 1 1580 0 1828 114 16 2 chr15 32820435 32820745 -68559776 + THE1C LTR MaLR 1 375 0 993 233 37 0 chr15 32821154 32821369 -68559152 + MER58A DNA MER1_type 1 223 -1 23 0 0 0 chr15 32823090 32823113 -68557408 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr15 32825430 32825469 -68555052 + AT_rich Low_complexity Low_complexity 1 39 0 300 316 138 23 chr15 32825867 32826043 -68554478 + MIR SINE MIR 20 230 -32 2029 133 4 0 chr15 32826043 32826344 -68554177 + AluSg SINE Alu 1 302 0 300 316 138 23 chr15 32826344 32826382 -68554139 + MIR SINE MIR 230 262 0 608 268 0 6 chr15 32827342 32827521 -68553000 - MER104 DNA MER2_type -2 178 1 264 304 14 0 chr15 32827948 32828086 -68552435 - L1MEc LINE L1 -4620 1776 1637 2292 143 17 6 chr15 32828120 32828476 -68552045 - THE1B LTR MaLR 0 364 5 10322 118 14 26 chr15 32828476 32830075 -68550446 - THE1B-int LTR MaLR 0 1580 1 2414 116 17 8 chr15 32830075 32830436 -68550085 - THE1B LTR MaLR 0 364 1 1569 162 179 14 chr15 32830448 32830812 -68549709 + MSTA LTR MaLR 5 428 0 2766 264 14 7 chr15 32830992 32831711 -68548810 + L1MEc LINE L1 256 979 -5417 813 206 20 36 chr15 32831725 32831972 -68548549 + L1MB7 LINE L1 4987 5229 -917 7044 53 7 0 chr15 32831974 32833629 -68546892 - L1PA5 LINE L1 0 6154 4492 21897 79 8 0 chr15 32833630 32836545 -68543976 - L1PA5 LINE L1 -3210 2936 1 367 145 12 24 chr15 32836545 32836628 -68543893 + L1MB7 LINE L1 5221 5302 -844 * 3411 168 43 6 chr15 32836624 32838172 -68542349 + L1MA4 LINE L1 4644 6293 -7 1736 196 30 2 chr15 32838181 32838591 -68541930 + L1MB7 LINE L1 5276 5697 -487 340 212 12 0 chr15 32838580 32838665 -68541856 + L1MB7 LINE L1 6099 6184 0 * 1008 270 123 32 chr15 32838698 32839387 -68541134 + L1ME2 LINE L1 1064 1815 -4581 32035 30 2 1 chr15 32839389 32844022 -68536499 + L1PA3 LINE L1 1519 6155 0 6232 243 79 20 chr15 32844058 32845704 -68534817 + L1ME2 LINE L1 1816 3656 -2559 937 245 19 9 chr15 32845704 32845920 -68534601 - MER20 DNA MER1_type 0 219 2 6232 243 79 20 chr15 32845920 32846963 -68533558 + L1ME2 LINE L1 3656 4636 -1579 1183 181 81 40 chr15 32846961 32847259 -68533262 + L1ME2 LINE L1 5677 5986 -247 * 64 62 0 0 chr15 32847460 32847573 -68532948 + AT_rich Low_complexity Low_complexity 1 113 0 860 246 5 0 chr15 32848629 32848824 -68531697 - MLT1B LTR MaLR 0 390 195 485 110 40 0 chr15 32848861 32848961 -68531560 + GA-rich Low_complexity Low_complexity 1 104 0 760 201 63 17 chr15 32848961 32849135 -68531386 - MLT1B LTR MaLR -208 182 1 2178 118 48 28 chr15 32849810 32850167 -68530354 - THE1B LTR MaLR 0 364 1 10765 98 7 47 chr15 32850168 32851798 -68528723 - THE1B-int LTR MaLR -1 1579 14 2002 135 51 25 chr15 32851806 32852161 -68528360 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr15 32853645 32853667 -68526854 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 32854123 32854145 -68526376 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr15 32854976 32855007 -68525514 + AT_rich Low_complexity Low_complexity 1 31 0 346 289 16 16 chr15 32856340 32856461 -68524060 - L2 LINE L2 -9 3304 3184 1364 329 110 31 chr15 32856583 32857521 -68523000 - L2 LINE L2 -343 2971 1960 180 0 0 0 chr15 32857985 32858005 -68522516 + (A)n Simple_repeat Simple_repeat 1 20 0 999 306 246 24 chr15 32858240 32859076 -68521445 - L2 LINE L2 -3 3310 2302 350 256 84 118 chr15 32859964 32860355 -68520166 + L1ME4a LINE L1 5500 5877 -244 26 113 0 0 chr15 32860907 32861031 -68519490 + AT_rich Low_complexity Low_complexity 1 124 0 276 229 51 85 chr15 32861850 32861968 -68518553 - MER5A DNA MER1_type -15 174 61 * 299 280 51 59 chr15 32861863 32861981 -68518540 + MER5A DNA MER1_type 38 154 -35 3213 137 15 22 chr15 32862121 32862669 -68517852 - L1MC1 LINE L1 0 6333 5790 303 127 0 16 chr15 32862681 32862744 -68517777 + L1PA16 LINE L1 6098 6159 -7 668 175 69 8 chr15 32862758 32862903 -68517618 - L1MC1 LINE L1 -386 5798 5646 1126 175 47 59 chr15 32863999 32864339 -68516182 + MER33 DNA MER1_type 1 324 0 199 304 61 52 chr15 32865148 32865196 -68515325 - MIR SINE MIR -55 207 161 2710 26 0 6 chr15 32865196 32865508 -68515013 + AluY SINE Alu 1 310 -1 199 304 61 52 chr15 32865508 32865574 -68514947 - MIR SINE MIR -101 161 92 1626 84 0 0 chr15 32866136 32866338 -68514183 + AluY SINE Alu 89 290 -21 21 36 0 0 chr15 32866339 32866367 -68514154 + AT_rich Low_complexity Low_complexity 1 28 0 41 72 0 0 chr15 32867084 32867167 -68513354 + AT_rich Low_complexity Low_complexity 1 83 0 191 302 0 0 chr15 32868745 32868788 -68511733 - L2 LINE L2 -61 3211 3169 1410 130 9 9 chr15 32868823 32869054 -68511467 + L1PA16 LINE L1 6 236 -5639 * 15993 169 10 25 chr15 32869050 32872360 -68508161 + L1PA16 LINE L1 854 4173 -2288 4100 155 35 4 chr15 32872338 32873054 -68507467 + L1PA16 LINE L1 5734 6471 -10 * 5505 111 27 4 chr15 32873064 32875283 -68505238 - L1PA8 LINE L1 -12 6160 3723 8374 209 26 19 chr15 32875299 32877689 -68502832 - L1P4 LINE L1 -679 5487 3081 200 324 14 14 chr15 32878037 32878108 -68502413 + L2 LINE L2 3015 3085 -187 415 335 124 0 chr15 32878380 32878598 -68501923 + MIR SINE MIR 2 246 -16 238 367 17 8 chr15 32879735 32879855 -68500666 - L2 LINE L2 -234 3038 2918 693 260 82 43 chr15 32879875 32880179 -68500342 - L2 LINE L2 -685 2629 2314 503 264 32 53 chr15 32880269 32880515 -68500006 - HAL1 LINE L1 -865 1642 1402 21 57 0 0 chr15 32880520 32880555 -68499966 + AT_rich Low_complexity Low_complexity 1 35 0 461 333 63 44 chr15 32880760 32881030 -68499491 - HAL1 LINE L1 -1403 1104 830 276 53 0 0 chr15 32881448 32881486 -68499035 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6742 20 0 0 chr15 32881493 32882260 -68498261 - L1PA3 LINE L1 -29 6126 5360 2127 34 0 0 chr15 32882256 32882521 -68498000 + L1PA3 LINE L1 5077 5341 -805 * 1385 204 88 0 chr15 32882546 32882828 -68497693 - AluJb SINE Alu 0 307 3 244 300 7 71 chr15 32882989 32883129 -68497392 - L2 LINE L2 -985 2329 2199 1784 169 35 27 chr15 32885239 32885611 -68494910 - THE1C LTR MaLR 0 375 1 1638 187 47 7 chr15 32885780 32886080 -68494441 + AluJo SINE Alu 1 312 0 400 351 66 25 chr15 32886928 32887403 -68493118 - L2 LINE L2 -218 3054 2549 338 317 35 36 chr15 32887429 32887683 -68492838 + L1ME3A LINE L1 5618 5875 -295 24 32 0 0 chr15 32887727 32887758 -68492763 + AT_rich Low_complexity Low_complexity 1 31 0 637 176 46 0 chr15 32888017 32888125 -68492396 - Tigger1 DNA MER2_type 0 2418 2306 21 57 0 0 chr15 32888245 32888280 -68492241 + AT_rich Low_complexity Low_complexity 1 35 0 13647 132 10 40 chr15 32888293 32888739 -68491782 - Tigger1 DNA MER2_type -148 2270 1812 2126 122 17 0 chr15 32888739 32889035 -68491486 - AluSq SINE Alu -12 301 1 13647 132 10 40 chr15 32889035 32890927 -68489594 - Tigger1 DNA MER2_type -606 1812 2 1224 345 85 46 chr15 32891015 32891331 -68489190 - L2 LINE L2 -799 2515 2213 1347 237 106 38 chr15 32891331 32891804 -68488717 - MLT1D LTR MaLR 0 505 1 1224 345 85 46 chr15 32891804 32892773 -68487748 - L2 LINE L2 -1101 2213 1180 624 324 34 0 chr15 32892881 32893088 -68487433 + MIR SINE MIR 47 260 -2 186 150 0 0 chr15 32893257 32893297 -68487224 + (TA)n Simple_repeat Simple_repeat 2 41 0 205 51 51 0 chr15 32893336 32893375 -68487146 + (TA)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chr15 32893617 32893641 -68486880 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1394 193 25 102 chr15 32895588 32895874 -68484647 - MLT1A2 LTR MaLR -11 363 114 2155 146 75 39 chr15 32895874 32896285 -68484236 + MSTC LTR MaLR 3 428 0 1394 193 25 102 chr15 32896285 32896391 -68484130 - MLT1A2 LTR MaLR -260 114 1 633 221 33 44 chr15 32896588 32896769 -68483752 - L2 LINE L2 -17 3296 3118 30127 42 2 0 chr15 32898498 32903012 -68477509 + L1PA4 LINE L1 1636 6155 0 215 368 85 15 chr15 32904246 32904447 -68476074 + MIR SINE MIR 32 246 -16 256 296 0 0 chr15 32905999 32906070 -68474451 - MER112 DNA MER1_type -8 252 182 * 271 192 0 82 chr15 32906050 32906123 -68474398 - MER112 DNA MER1_type -193 67 1 2436 85 7 0 chr15 32906248 32906554 -68473967 - AluSc SINE Alu -1 308 1 439 266 22 7 chr15 32906735 32906874 -68473647 - MER69 DNA AcHobo -1 2525 2385 726 268 52 29 chr15 32907146 32907379 -68473142 + MIR SINE MIR 23 262 0 592 45 11 22 chr15 32907541 32907630 -68472891 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 385 198 0 0 chr15 32907852 32907938 -68472583 + L1PA13 LINE L1 1779 1864 -4923 229 229 38 15 chr15 32958133 32958264 -68422257 + (TA)n Simple_repeat Simple_repeat 2 135 0 326 296 226 0 chr15 32960219 32960378 -68420143 + MIR SINE MIR 68 262 0 343 270 36 45 chr15 32960990 32961101 -68419420 + L2 LINE L2 3154 3263 -9 195 359 55 23 chr15 32961680 32961808 -68418713 - L2 LINE L2 -16 3256 3125 886 148 7 203 chr15 32962305 32962473 -68418048 - MER77 LTR ERV1 -372 233 144 1897 153 0 10 chr15 32962473 32962768 -68417753 + AluSg SINE Alu 5 296 -14 886 148 7 203 chr15 32962768 32962889 -68417632 - MER77 LTR ERV1 -461 144 1 32 0 0 0 chr15 32963261 32963293 -68417228 + AT_rich Low_complexity Low_complexity 1 32 0 2007 142 0 0 chr15 32963427 32963736 -68416785 - AluSg SINE Alu -1 309 1 488 93 13 0 chr15 32965404 32965479 -68415042 + (TCCC)n Simple_repeat Simple_repeat 2 77 0 1673 176 40 7 chr15 32965479 32965829 -68414692 - AluJb SINE Alu 0 360 1 2100 136 7 0 chr15 32966027 32966335 -68414186 - AluSx SINE Alu -2 310 1 201 295 98 44 chr15 32966371 32966554 -68413967 + L2 LINE L2 3121 3313 0 190 153 34 0 chr15 32968258 32968317 -68412204 + (TATAA)n Simple_repeat Simple_repeat 5 65 0 354 242 0 0 chr15 32968449 32968511 -68412010 - AluS SINE Alu -238 63 2 620 105 0 0 chr15 32973443 32973529 -68406992 - AluJb SINE Alu -188 124 39 592 274 126 21 chr15 32973630 32973820 -68406701 + MER63A DNA MER1_type 1 210 0 278 277 0 24 chr15 32973870 32973953 -68406568 + Charlie7 DNA MER1_type 2 82 -2530 189 286 165 2 chr15 32974093 32974215 -68406306 - MIR SINE MIR -3 259 87 267 190 25 38 chr15 32974230 32974309 -68406212 + Charlie7 DNA MER1_type 2528 2605 -7 239 341 98 6 chr15 32974323 32974496 -68406025 + L2 LINE L2 2142 2330 -984 267 301 60 0 chr15 32974675 32974758 -68405763 + MIR3 SINE MIR 113 200 -8 25 31 0 0 chr15 32975457 32975489 -68405032 + AT_rich Low_complexity Low_complexity 1 32 0 2468 53 0 0 chr15 32979729 32980013 -68400508 + AluY SINE Alu 23 306 -5 481 224 87 12 chr15 32980874 32981035 -68399486 - MER82 DNA MER2_type -459 194 22 10198 123 5 19 chr15 32981035 32982707 -68397814 - L1P LINE L1 -3661 2485 838 234 243 71 0 chr15 32982714 32982784 -68397737 - L1ME LINE L1 -335 5827 5753 1897 133 0 48 chr15 32982793 32983109 -68397412 - AluSx SINE Alu -11 301 1 1549 256 48 31 chr15 32983109 32983586 -68396935 + MLT2B1 LTR ERVL 1 485 -35 728 289 84 22 chr15 32983594 32984179 -68396342 - L1M4 LINE L1 -2402 3744 3124 23 33 0 0 chr15 32984289 32984319 -68396202 + AT_rich Low_complexity Low_complexity 1 30 0 463 320 113 0 chr15 32984564 32984758 -68395763 - LTR16A LTR ERVL -234 216 1 2384 86 0 0 chr15 32985815 32986118 -68394403 - AluY SINE Alu 0 311 9 231 302 57 38 chr15 32990042 32990148 -68390373 + MIR SINE MIR 100 207 -55 216 0 0 0 chr15 32990188 32990212 -68390309 + (TTA)n Simple_repeat Simple_repeat 3 26 0 703 274 40 50 chr15 32990370 32990750 -68389771 + L1MC4a LINE L1 5507 5882 -1926 22 0 0 0 chr15 32990948 32990970 -68389551 + AT_rich Low_complexity Low_complexity 1 22 0 1884 143 26 26 chr15 32991746 32992053 -68388468 - AluSx SINE Alu -4 308 2 2225 171 29 17 chr15 32992122 32992542 -68387979 + MSTB LTR MaLR 1 425 -1 577 284 209 5 chr15 32992575 32992786 -68387735 + MIR SINE MIR 2 255 -7 545 238 31 12 chr15 32992816 32992976 -68387545 + MER103 DNA DNA 2 164 -2 686 290 28 9 chr15 32993260 32993477 -68387044 - MIR SINE MIR 0 262 42 13384 208 35 11 chr15 32993924 32997998 -68382523 - L1PA15-16 LINE L1 -851 6733 2536 326 128 0 0 chr15 32998000 32998047 -68382474 - L1PA15-16 LINE L1 -5135 2446 2400 795 322 59 39 chr15 32998052 32999067 -68381454 + L1ME4a LINE L1 3666 4700 -1446 304 309 12 0 chr15 32999069 32999150 -68381371 - L2 LINE L2 -3 3310 3229 328 335 121 13 chr15 32999334 32999558 -68380963 - MIR SINE MIR -10 252 5 4628 200 15 24 chr15 32999794 33000919 -68379602 - L1MA9 LINE L1 -39 6273 5159 525 257 109 32 chr15 33000905 33001243 -68379278 + L1ME4a LINE L1 5606 5969 -152 * 23 54 0 0 chr15 33001584 33001621 -68378900 + AT_rich Low_complexity Low_complexity 1 37 0 665 329 27 9 chr15 33002715 33002937 -68377584 - MIR SINE MIR -2 260 35 551 252 168 0 chr15 33003106 33003261 -68377260 - MER5A DNA MER1_type 0 189 9 2389 73 0 0 chr15 33003271 33003571 -68376950 + AluY SINE Alu 1 300 -11 204 40 0 0 chr15 33005950 33005975 -68374546 + (TG)n Simple_repeat Simple_repeat 2 26 0 29 47 0 0 chr15 33006374 33006417 -68374104 + AT_rich Low_complexity Low_complexity 1 43 0 633 259 0 6 chr15 33006568 33006726 -68373795 + FRAM SINE Alu 13 169 -7 22 80 0 0 chr15 33006778 33006828 -68373693 + AT_rich Low_complexity Low_complexity 1 50 0 369 324 51 41 chr15 33007045 33007411 -68373110 + L1MC4a LINE L1 6428 6797 -1034 830 261 11 11 chr15 33007434 33007622 -68372899 + MER5A DNA MER1_type 2 189 0 1206 220 133 78 chr15 33007623 33008300 -68372221 + L1MC5 LINE L1 7200 7913 -48 640 261 191 12 chr15 33008512 33008939 -68371582 - LTR33 LTR ERVL -4 517 1 1735 157 99 0 chr15 33010082 33010375 -68370146 - MER1B DNA MER1_type -17 322 1 552 308 9 51 chr15 33010695 33010909 -68369612 + MIR SINE MIR 2 206 -56 659 81 0 0 chr15 33011119 33011206 -68369315 - L1P2 LINE L1 -387 5767 5681 1178 70 0 0 chr15 33011211 33011369 -68369152 + L1PA5 LINE L1 5990 6147 -7 362 309 120 40 chr15 33011738 33011913 -68368608 + MIR3 SINE MIR 2 190 -18 21 0 0 0 chr15 33011974 33011995 -68368526 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr15 33013580 33013605 -68366916 + AT_rich Low_complexity Low_complexity 1 25 0 705 314 21 21 chr15 33014801 33015040 -68365481 + L2 LINE L2 2872 3110 -203 182 279 0 0 chr15 33015056 33015099 -68365422 - L2 LINE L2 -246 3067 3025 297 255 112 0 chr15 33015171 33015269 -68365252 + MIR SINE MIR 116 224 -38 339 25 0 0 chr15 33015426 33015466 -68365055 + (CA)n Simple_repeat Simple_repeat 2 41 0 216 67 0 0 chr15 33015466 33015496 -68365025 + (TC)n Simple_repeat Simple_repeat 1 30 0 301 285 36 66 chr15 33015693 33015830 -68364691 + L2 LINE L2 3181 3313 0 225 292 15 88 chr15 33017581 33017718 -68362803 + L2 LINE L2 2967 3093 -179 531 288 40 62 chr15 33017893 33018070 -68362451 + MIR SINE MIR 5 177 -85 23 33 0 0 chr15 33018626 33018656 -68361865 + AT_rich Low_complexity Low_complexity 1 30 0 235 281 140 41 chr15 33018747 33018918 -68361603 - MIR SINE MIR -55 207 20 213 310 56 0 chr15 33019389 33019460 -68361061 + L2 LINE L2 3229 3303 -10 1511 121 4 4 chr15 33019460 33019709 -68360812 + L1MA2 LINE L1 6056 6304 0 1165 327 74 40 chr15 33020269 33021070 -68359451 + ERVL LTR ERVL 4497 5324 -161 286 320 21 21 chr15 33021503 33021600 -68358921 + LTR67 LTR ERVL 98 194 -363 269 335 44 6 chr15 33021847 33022029 -68358492 + LTR67 LTR ERVL 352 540 -17 220 344 76 19 chr15 33022137 33022294 -68358227 + L2 LINE L2 2374 2539 -775 236 225 126 54 chr15 33022401 33022512 -68358009 + HAL1 LINE L1 2 120 -2387 661 24 0 0 chr15 33022534 33022618 -68357903 + AluY SINE Alu 220 303 -6 640 323 14 0 chr15 33022620 33022840 -68357681 + HAL1 LINE L1 136 358 -2149 321 254 35 35 chr15 33022849 33022991 -68357530 + HAL1 LINE L1 957 1098 -1409 1439 272 141 30 chr15 33023042 33024016 -68356505 + HAL1 LINE L1 380 1461 -1046 411 229 133 16 chr15 33024067 33024255 -68356266 + HAL1 LINE L1 2298 2507 0 279 133 0 0 chr15 33024760 33024805 -68355716 + (CATA)n Simple_repeat Simple_repeat 2 46 0 344 319 138 9 chr15 33025885 33026098 -68354423 - MIR SINE MIR 0 262 25 239 283 118 53 chr15 33026304 33026456 -68354065 - MIR3 SINE MIR -35 173 12 210 91 0 0 chr15 33026467 33026500 -68354021 + (TC)n Simple_repeat Simple_repeat 2 34 0 405 0 0 0 chr15 33026500 33026545 -68353976 + (CA)n Simple_repeat Simple_repeat 1 45 0 469 291 81 6 chr15 33027226 33027398 -68353123 - MIR3 SINE MIR -1 207 23 193 233 0 97 chr15 33027784 33027887 -68352634 - MIR SINE MIR -23 239 147 968 280 91 69 chr15 33027985 33028711 -68351810 + L1M4 LINE L1 3554 4325 -1821 2182 108 14 0 chr15 33028711 33029008 -68351513 + AluSg SINE Alu 3 303 -7 968 280 91 69 chr15 33029008 33029618 -68350903 + L1M4 LINE L1 4325 4920 -1226 223 24 24 49 chr15 33029852 33029893 -68350628 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1586 299 39 37 chr15 33029949 33030611 -68349910 + MER77 LTR ERV1 54 679 -4 288 272 54 0 chr15 33030944 33031036 -68349485 - MIR SINE MIR 0 262 166 191 250 0 0 chr15 33031646 33031686 -68348835 - MIR3 SINE MIR -37 171 132 2321 156 0 0 chr15 33031691 33032057 -68348464 - MER47A DNA MER2_type 0 366 1 1385 237 30 20 chr15 33032067 33032463 -68348058 + L2 LINE L2 1267 1666 -1648 704 305 109 45 chr15 33032560 33032980 -68347541 + L2 LINE L2 2867 3313 0 24 0 0 0 chr15 33033247 33033271 -68347250 + AT_rich Low_complexity Low_complexity 1 24 0 255 263 0 0 chr15 33033401 33033458 -68347063 + MIR3 SINE MIR 149 205 -3 344 287 268 19 chr15 33035122 33035331 -68345190 - MIR SINE MIR 0 262 2 21 36 0 0 chr15 33035478 33035506 -68345015 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr15 33035752 33035776 -68344745 + AT_rich Low_complexity Low_complexity 1 24 0 1537 114 26 30 chr15 33035863 33036134 -68344387 - L1MA5A LINE L1 -6 6291 6022 868 315 44 29 chr15 33036777 33037259 -68343262 + LTR16C LTR ERVL 1 489 -2 267 175 0 0 chr15 33037417 33037474 -68343047 + (TA)n Simple_repeat Simple_repeat 2 58 0 1287 166 24 142 chr15 33038367 33038705 -68341816 + AluJo SINE Alu 1 298 -4 2375 169 37 11 chr15 33039229 33039684 -68340837 + MLT1C LTR MaLR 1 467 0 304 388 7 41 chr15 33039716 33039863 -68340658 + MIR3 SINE MIR 6 147 -61 22 0 0 0 chr15 33040078 33040100 -68340421 + AT_rich Low_complexity Low_complexity 1 22 0 30 69 0 0 chr15 33042738 33042796 -68337725 + AT_rich Low_complexity Low_complexity 1 58 0 207 69 0 0 chr15 33042877 33042906 -68337615 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 429 20 0 0 chr15 33042905 33042955 -68337566 + (TA)n Simple_repeat Simple_repeat 1 50 0 1936 154 51 54 chr15 33043337 33043766 -68336755 + MSTA LTR MaLR 1 428 0 9318 175 19 4 chr15 33043794 33045398 -68335123 + MSTA-int LTR MaLR 15 1642 -9 854 121 38 0 chr15 33045417 33045549 -68334972 + MSTA LTR MaLR 1 137 -291 2264 96 0 0 chr15 33046166 33046448 -68334073 - AluSg SINE Alu -28 282 1 9616 134 34 9 chr15 33046449 33047996 -68332525 - Tigger1 DNA MER2_type -832 1586 1 255 320 0 0 chr15 33048000 33048075 -68332446 + L3 LINE CR1 1294 1368 -209 650 296 56 14 chr15 33048177 33048390 -68332131 - MIR SINE MIR -13 249 28 253 261 23 54 chr15 33049500 33049630 -68330891 + L1MEd LINE L1 3 128 -5991 1890 146 55 25 chr15 33049916 33050280 -68330241 - THE1C LTR MaLR 0 375 1 601 274 64 66 chr15 33050376 33050784 -68329737 + L1MEd LINE L1 520 926 -5193 22 35 0 0 chr15 33051308 33051337 -68329184 + AT_rich Low_complexity Low_complexity 1 29 0 4851 106 24 8 chr15 33051527 33052288 -68328233 - L1MA5A LINE L1 -2 6295 5523 899 129 65 0 chr15 33055109 33055248 -68325273 - Tigger7 DNA MER2_type -1 2486 2339 * 1540 225 58 6 chr15 33055243 33055568 -68324953 - Tigger7 DNA MER2_type -389 344 3 1370 255 42 42 chr15 33056388 33056819 -68323702 + LTR40c LTR ERVL 35 465 0 224 333 122 8 chr15 33056823 33056946 -68323575 + L2 LINE L2 3133 3269 -3 438 20 0 0 chr15 33059990 33060041 -68320480 + (CA)n Simple_repeat Simple_repeat 2 52 0 222 191 0 0 chr15 33063655 33063702 -68316819 + CT-rich Low_complexity Low_complexity 2 48 0 770 183 118 0 chr15 33064611 33064780 -68315741 + MER53 DNA DNA 1 189 0 2273 93 0 0 chr15 33064812 33065091 -68315430 + AluSc SINE Alu 3 281 -28 253 274 132 19 chr15 33065534 33065640 -68314881 - MIR SINE MIR -11 251 134 40 0 0 0 chr15 33066567 33066607 -68313914 + AT_rich Low_complexity Low_complexity 1 40 0 181 128 0 77 chr15 33066809 33066848 -68313673 + MER5C DNA MER1_type 280 315 -9 12570 238 43 26 chr15 33068279 33069020 -68311501 + L1PA16 LINE L1 2190 2917 -4687 392 18 18 0 chr15 33069020 33069075 -68311446 + L1PA2 LINE L1 6100 6155 0 12570 238 43 26 chr15 33069075 33070079 -68310442 + L1PA16 LINE L1 2917 3902 -3702 1756 123 0 15 chr15 33070079 33070340 -68310181 + AluSc SINE Alu 44 300 -9 12570 238 43 26 chr15 33070340 33070950 -68309571 + L1PA16 LINE L1 3902 4500 -3104 459 35 0 0 chr15 33070950 33071007 -68309514 + (GAAA)n Simple_repeat Simple_repeat 2 58 0 12570 238 43 26 chr15 33071007 33071068 -68309453 + L1PA16 LINE L1 4500 4558 -3046 1447 192 6 45 chr15 33071068 33071381 -68309140 + AluJb SINE Alu 3 303 -9 12570 238 43 26 chr15 33071381 33073649 -68306872 + L1PA16 LINE L1 4558 6922 -682 3286 147 21 2 chr15 33073691 33074261 -68306260 + L1PA16 LINE L1 7020 7600 -4 481 118 11 11 chr15 33074314 33074407 -68306114 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 2231 71 3 0 chr15 33075351 33075633 -68304888 + AluY SINE Alu 1 283 -28 216 0 0 0 chr15 33075642 33075666 -68304855 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 2071 137 3 0 chr15 33075699 33075999 -68304522 - AluSg SINE Alu -9 301 1 456 268 78 17 chr15 33076130 33076144 -68304377 + MER46C DNA MER2_type 147 159 -179 1627 189 85 32 chr15 33076144 33076520 -68304001 - MSTD LTR MaLR 0 396 1 456 268 78 17 chr15 33076520 33076684 -68303837 + MER46C DNA MER2_type 159 336 -2 5709 161 8 73 chr15 33076739 33077971 -68302550 - L1P LINE L1 -1144 5002 3851 653 215 0 0 chr15 33077967 33078111 -68302410 + L1P LINE L1 5012 5155 -991 * 21 0 0 0 chr15 33079667 33079688 -68300833 + AT_rich Low_complexity Low_complexity 1 21 0 310 277 0 0 chr15 33079714 33079797 -68300724 + (CATA)n Simple_repeat Simple_repeat 2 84 0 186 133 0 0 chr15 33081861 33081891 -68298630 + (GGA)n Simple_repeat Simple_repeat 3 32 0 1427 242 60 96 chr15 33082523 33083189 -68297332 - MER21B LTR ERV1 -124 739 98 237 290 29 80 chr15 33083162 33083266 -68297255 - MER77 LTR ERV1 -408 197 100 * 1487 94 70 0 chr15 33083266 33083479 -68297042 - MER30 DNA MER1_type 0 230 3 237 290 29 80 chr15 33083479 33083512 -68297009 - MER77 LTR ERV1 -505 100 67 2417 70 0 3 chr15 33084465 33084763 -68295758 - AluY SINE Alu -14 297 1 228 178 44 0 chr15 33084767 33084812 -68295709 - MER103 DNA DNA -114 52 6 267 287 64 53 chr15 33085298 33085392 -68295129 - L2 LINE L2 -37 3235 3141 302 231 107 41 chr15 33085731 33085900 -68294621 + Charlie7 DNA MER1_type 2432 2611 -1 258 331 31 23 chr15 33086050 33086180 -68294341 + L2 LINE L2 2657 2787 -527 534 236 87 35 chr15 33087087 33087316 -68293205 + MER112 DNA MER1_type 8 248 -12 180 374 43 22 chr15 33087338 33087568 -68292953 - L2 LINE L2 -2510 804 570 1214 106 11 17 chr15 33087609 33087788 -68292733 - AluSg/x SINE Alu -7 305 128 808 188 12 41 chr15 33087790 33087960 -68292561 + MER5A DNA MER1_type 1 165 -24 24 0 0 0 chr15 33089058 33089082 -68291439 + AT_rich Low_complexity Low_complexity 1 24 0 621 219 102 16 chr15 33089089 33089276 -68291245 + L1ME3A LINE L1 5935 6137 -33 542 323 121 27 chr15 33089539 33090059 -68290462 - L2 LINE L2 -28 3285 2710 216 313 0 0 chr15 33090225 33090289 -68290232 + MIR SINE MIR 47 110 -152 185 226 0 0 chr15 33090308 33090339 -68290182 + L2 LINE L2 3263 3293 -20 257 286 0 41 chr15 33090776 33090874 -68289647 + L1MC/D LINE L1 5723 5793 -566 507 261 171 24 chr15 33091312 33091523 -68288998 - MIR SINE MIR -9 253 12 2134 104 101 18 chr15 33091767 33092103 -68288418 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr15 33092676 33092699 -68287822 + AT_rich Low_complexity Low_complexity 1 23 0 484 233 167 0 chr15 33093679 33093799 -68286722 + MER3 DNA MER1_type 70 209 0 372 233 0 0 chr15 33093799 33093829 -68286692 - MER3 DNA MER1_type -162 47 18 186 359 0 0 chr15 33093833 33093886 -68286635 - MER5A DNA MER1_type -74 115 63 2648 32 7 3 chr15 33094000 33094310 -68286211 + AluY SINE Alu 1 311 0 2229 108 3 0 chr15 33094332 33094627 -68285894 + AluSg SINE Alu 1 296 -14 2130 126 3 10 chr15 33096090 33096391 -68284130 + AluSx SINE Alu 1 299 -13 1521 159 70 0 chr15 33096708 33096978 -68283543 + MSTA LTR MaLR 140 428 0 1626 262 58 20 chr15 33098655 33099755 -68280766 + L1MEc LINE L1 52 1273 -5123 2235 62 7 13 chr15 33100174 33100480 -68280041 - L1PA8 LINE L1 -1 6171 5868 386 310 108 38 chr15 33100886 33101173 -68279348 + L2 LINE L2 2870 3176 -137 437 209 12 12 chr15 33101218 33101304 -68279217 + MER58 DNA MER1_type 129 2419 -1 213 200 44 0 chr15 33101305 33101350 -68279171 + L2 LINE L2 3189 3235 -78 1433 151 73 4 chr15 33101353 33101612 -68278909 + MLT1B LTR MaLR 1 277 -113 21 36 0 0 chr15 33102297 33102325 -68278196 + AT_rich Low_complexity Low_complexity 1 28 0 237 261 25 109 chr15 33102530 33102649 -68277872 + L2 LINE L2 3146 3254 -18 689 344 138 32 chr15 33102668 33103712 -68276809 + L2 LINE L2 924 2078 -1236 726 220 154 14 chr15 33103755 33103969 -68276552 - MLT1C LTR MaLR 0 467 224 467 344 41 12 chr15 33104051 33104295 -68276226 + L2 LINE L2 2830 3080 -192 210 310 0 0 chr15 33104410 33104468 -68276053 + L2 LINE L2 3251 3308 -5 4690 110 10 21 chr15 33105018 33105737 -68274784 - Tigger1 DNA MER2_type -5 2413 1703 21 0 0 0 chr15 33109476 33109497 -68271024 + AT_rich Low_complexity Low_complexity 1 21 0 229 0 0 0 chr15 33110268 33110294 -68270227 + L1MA3 LINE L1 5359 5384 -916 3382 169 27 36 chr15 33110295 33110541 -68269980 + L1MA3 LINE L1 5572 5819 -486 2147 137 3 0 chr15 33110541 33110848 -68269673 + AluSx SINE Alu 5 312 0 3382 169 27 36 chr15 33110848 33111342 -68269179 + L1MA3 LINE L1 5819 6305 0 267 311 11 0 chr15 33111472 33111562 -68268959 + MARNA DNA Mariner 300 390 -196 588 216 133 4 chr15 33111563 33111728 -68268793 + L1MB8 LINE L1 5701 5883 -287 205 233 12 12 chr15 33111760 33111846 -68268675 + GA-rich Low_complexity Low_complexity 1 86 0 267 31 0 0 chr15 33112919 33112951 -68267570 + (TAG)n Simple_repeat Simple_repeat 1 32 0 302 343 140 7 chr15 33113768 33113911 -68266610 - MIR3 SINE MIR -10 198 37 226 200 0 80 chr15 33114342 33114392 -68266129 - L2 LINE L2 -2 3311 3266 24 0 0 0 chr15 33114836 33114860 -68265661 + AT_rich Low_complexity Low_complexity 1 24 0 1333 205 92 16 chr15 33116037 33116354 -68264167 - MER58B DNA MER1_type 0 341 1 1792 183 8 45 chr15 33117610 33117987 -68262534 + MLT1A1 LTR MaLR 1 363 -2 497 316 64 13 chr15 33118020 33118254 -68262267 - L2 LINE L2 -40 3232 2987 204 152 0 22 chr15 33121595 33121641 -68258880 + A-rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr15 33122499 33122521 -68258000 + AT_rich Low_complexity Low_complexity 1 22 0 272 224 0 0 chr15 33122745 33122794 -68257727 + L1PA12 LINE L1 1268 1316 -6265 891 299 40 24 chr15 33122801 33123176 -68257345 + L1PA12 LINE L1 1005 1385 -6196 489 282 48 48 chr15 33123376 33123585 -68256936 + L1PA12 LINE L1 1152 1360 -6221 1828 155 55 42 chr15 33123586 33123986 -68256535 + MSTA LTR MaLR 1 405 -23 1811 213 70 25 chr15 33124321 33124805 -68255716 - Charlie1b DNA MER1_type 0 523 18 344 317 49 7 chr15 33125072 33125214 -68255307 + L1M4 LINE L1 3314 3461 -2685 1164 296 9 15 chr15 33125378 33125837 -68254684 + L1M4 LINE L1 3481 3936 -2210 515 271 156 25 chr15 33126011 33126233 -68254288 - MIR SINE MIR -11 251 3 198 333 0 48 chr15 33126259 33126343 -68254178 - MER5B DNA MER1_type -1 177 98 270 361 31 0 chr15 33126368 33126465 -68254056 + MER5B DNA MER1_type 20 119 -59 7092 174 64 8 chr15 33127718 33130009 -68250512 - L1PBa LINE L1 -4293 2570 6 918 150 19 6 chr15 33130027 33130187 -68250334 - MLT1A2 LTR MaLR -212 162 1 4995 233 47 55 chr15 33130695 33131442 -68249079 + L1M1 LINE L1 2183 2935 -4630 3967 70 10 2 chr15 33131442 33131960 -68248561 + L1PA7 LINE L1 5632 6153 -1 4995 233 47 55 chr15 33131960 33133550 -68246971 + L1M1 LINE L1 2935 4457 -3108 1839 176 10 3 chr15 33133550 33133846 -68246675 + AluJb SINE Alu 1 298 -14 4995 233 47 55 chr15 33133846 33134271 -68246250 + L1M1 LINE L1 4457 4884 -2681 183 42 0 0 chr15 33134550 33134574 -68245947 + (A)n Simple_repeat Simple_repeat 1 24 0 623 206 0 29 chr15 33134884 33135020 -68245501 + FLAM_A SINE Alu 1 132 -1 21 82 0 0 chr15 33135753 33135802 -68244719 + AT_rich Low_complexity Low_complexity 1 49 0 267 92 98 12 chr15 33135832 33135996 -68244525 + (TA)n Simple_repeat Simple_repeat 1 178 0 380 140 44 7 chr15 33136062 33136198 -68244323 + (TA)n Simple_repeat Simple_repeat 1 141 0 288 282 94 43 chr15 33136555 33136672 -68243849 - MIR SINE MIR -12 250 128 188 279 0 0 chr15 33136925 33136968 -68243553 - L3 LINE CR1 -5 1572 1530 326 273 72 15 chr15 33136968 33137068 -68243453 - MIR3 SINE MIR -100 108 16 2230 77 0 28 chr15 33137068 33137355 -68243166 - AluSq SINE Alu -8 305 27 326 273 72 15 chr15 33137355 33137367 -68243154 - MIR3 SINE MIR -192 16 6 1085 221 70 62 chr15 33137896 33138254 -68242267 + MLT1A1 LTR MaLR 1 361 -4 242 328 0 0 chr15 33139450 33139511 -68241010 - L3 LINE CR1 -1 1576 1516 396 0 0 0 chr15 33139729 33139773 -68240748 + (TG)n Simple_repeat Simple_repeat 2 45 0 3034 215 86 16 chr15 33139785 33141179 -68239342 - L1MA9 LINE L1 -149 6163 4681 278 194 113 8 chr15 33141281 33141405 -68239116 + L1ME3A LINE L1 4298 4434 -1712 186 43 0 0 chr15 33141422 33141445 -68239076 + (T)n Simple_repeat Simple_repeat 1 23 0 616 207 201 17 chr15 33141999 33142173 -68238348 - MIR SINE MIR -43 219 14 1059 132 6 19 chr15 33142490 33142697 -68237824 - AluSg/x SINE Alu 0 332 128 571 225 44 0 chr15 33142755 33142915 -68237606 + L1ME3A LINE L1 4463 4629 -1517 350 232 211 0 chr15 33142967 33143062 -68237459 + MIR SINE MIR 43 157 -105 3808 82 2 0 chr15 33143062 33143572 -68236949 - L1PA8 LINE L1 -9 6163 5653 723 258 60 25 chr15 33143895 33144259 -68236262 + L1ME3A LINE L1 5009 5385 -761 346 347 12 18 chr15 33144688 33144855 -68235666 + LTR16C LTR ERVL 326 491 0 546 251 63 48 chr15 33144855 33145126 -68235395 + L1ME3A LINE L1 5381 5655 -515 442 276 0 9 chr15 33145128 33145233 -68235288 + MER69A DNA AcHobo 2 105 -72 438 185 23 121 chr15 33145274 33145447 -68235074 + L1ME3A LINE L1 5799 5954 -216 532 130 0 43 chr15 33145574 33145666 -68234855 + AluS SINE Alu 1 88 -225 909 286 114 21 chr15 33145780 33146307 -68234214 + Charlie7 DNA MER1_type 91 666 -1946 535 266 69 17 chr15 33146327 33146500 -68234021 + MIR SINE MIR 57 238 -24 378 312 65 42 chr15 33147559 33147822 -68232699 + L1MC/D LINE L1 5297 5565 -794 220 272 57 32 chr15 33148038 33148151 -68232370 + MIR SINE MIR 63 140 -68 315 276 98 30 chr15 33150347 33150586 -68229935 + L1ME3A LINE L1 1329 1550 -5397 2243 102 0 3 chr15 33150586 33150871 -68229650 + AluSc SINE Alu 1 284 -25 402 21 0 0 chr15 33150873 33150920 -68229601 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 315 276 98 30 chr15 33150920 33151040 -68229481 + L1ME3A LINE L1 1550 1848 -5099 1047 270 74 40 chr15 33151159 33151616 -68228905 + L1ME3A LINE L1 3614 4054 -2903 2560 147 26 0 chr15 33151616 33152031 -68228490 - MSTA LTR MaLR 0 428 3 1047 270 74 40 chr15 33152031 33152595 -68227926 + L1ME3A LINE L1 4054 4714 -2243 1443 196 117 36 chr15 33152595 33153014 -68227507 - MSTB2 LTR MaLR -4 453 1 1047 270 74 40 chr15 33153014 33153097 -68227424 + L1ME3A LINE L1 4714 4793 -2164 27 0 0 0 chr15 33153225 33153252 -68227269 + AT_rich Low_complexity Low_complexity 1 27 0 1639 150 31 3 chr15 33153258 33153552 -68226969 - L1MC1 LINE L1 -6 6327 6026 323 246 115 25 chr15 33153564 33153686 -68226835 + L1M4 LINE L1 2981 3113 -3033 2235 109 0 0 chr15 33153729 33154023 -68226498 - AluSx SINE Alu -18 294 1 3227 133 37 2 chr15 33154063 33154628 -68225893 - L1MC1 LINE L1 -357 5976 5392 385 298 87 0 chr15 33154650 33154858 -68225663 + L1ME3A LINE L1 4808 5033 -1924 1325 239 119 41 chr15 33155032 33155549 -68224972 + L1ME3A LINE L1 5606 6081 -900 2182 111 0 0 chr15 33155549 33155838 -68224683 + AluSg SINE Alu 1 289 -21 1325 239 119 41 chr15 33155838 33156577 -68223944 + L1ME3A LINE L1 6081 6978 -3 1820 182 44 21 chr15 33157242 33157626 -68222895 + MLT2C1 LTR ERVL 5 397 0 5202 147 22 4 chr15 33160903 33160987 -68219534 + L1PA16 LINE L1 5171 5252 -914 2122 139 3 0 chr15 33160987 33161290 -68219231 + AluSx SINE Alu 1 304 -8 5202 147 22 4 chr15 33161290 33162187 -68218334 + L1PA16 LINE L1 5252 6166 0 1212 207 54 59 chr15 33162433 33162825 -68217696 - MLT1B LTR MaLR 0 390 1 207 246 49 16 chr15 33163406 33163467 -68217054 + L2 LINE L2 3250 3312 -1 1382 232 73 62 chr15 33163738 33164272 -68216249 - LTR55 LTR ERV -8 540 1 224 122 24 0 chr15 33164718 33164759 -68215762 + (CA)n Simple_repeat Simple_repeat 1 42 0 416 169 48 0 chr15 33165237 33165320 -68215201 + MLT1K LTR MaLR 499 585 -3 2406 139 44 7 chr15 33165671 33166080 -68214441 + MSTA LTR MaLR 5 428 0 214 419 7 7 chr15 33166296 33166432 -68214089 - L2 LINE L2 -226 3046 2911 2377 92 7 0 chr15 33166502 33166808 -68213713 + AluY SINE Alu 1 308 -3 339 239 33 0 chr15 33167339 33167431 -68213090 - MLT1J2 LTR MaLR -289 161 67 234 0 0 0 chr15 33167751 33167777 -68212744 + (TA)n Simple_repeat Simple_repeat 2 27 0 456 173 0 0 chr15 33168386 33168467 -68212054 + Tigger5 DNA MER2_type 2238 2318 -5 213 328 8 25 chr15 33168528 33168650 -68211871 + (TATATG)n Simple_repeat Simple_repeat 6 125 0 4881 218 50 7 chr15 33169434 33170800 -68209721 - L1M4c LINE L1 -1930 4452 3028 852 225 225 27 chr15 33170811 33171140 -68209381 - MSTD LTR MaLR -2 394 1 4409 168 27 32 chr15 33171141 33172526 -68207995 - L1 LINE L1 -3360 3022 1630 1256 181 71 7 chr15 33172542 33172873 -68207648 - L1M4c LINE L1 -4526 1857 1174 * 5486 136 14 7 chr15 33172868 33174169 -68206352 + L1PA13 LINE L1 4850 6158 -5 3591 186 99 41 chr15 33174177 33175184 -68205337 - L1M4c LINE L1 -5299 1085 20 193 364 45 8 chr15 33175654 33175786 -68204735 - L3 LINE CR1 -740 837 701 20053 159 33 23 chr15 33178565 33180094 -68200427 - L1MA3 LINE L1 -344 7380 5867 2244 108 3 0 chr15 33180094 33180410 -68200111 - AluSp SINE Alu 0 313 1 20053 159 33 23 chr15 33180410 33186163 -68194358 - L1MA3 LINE L1 -1857 5867 16 1361 184 61 65 chr15 33186496 33186789 -68193732 + AluJo SINE Alu 1 292 -20 22 0 0 0 chr15 33186789 33186811 -68193710 + AT_rich Low_complexity Low_complexity 1 22 0 1162 215 62 26 chr15 33187280 33187619 -68192902 - MER74B LTR ERVL -68 554 204 353 113 0 0 chr15 33187695 33187748 -68192773 - MER74B LTR ERVL -569 53 1 376 347 17 29 chr15 33187748 33187921 -68192600 - MIR3 SINE MIR -22 186 16 27 0 0 0 chr15 33188047 33188074 -68192447 + AT_rich Low_complexity Low_complexity 1 27 0 260 337 28 50 chr15 33189169 33189350 -68191171 + MER5B DNA MER1_type 1 177 -1 1478 201 7 24 chr15 33190271 33190559 -68189962 - AluJb SINE Alu -17 295 13 2403 74 7 0 chr15 33190790 33191089 -68189432 - AluY SINE Alu -10 301 1 285 325 146 35 chr15 33192501 33193105 -68187416 + L2 LINE L2 1805 2475 -839 4507 54 123 149 chr15 33193324 33194172 -68186349 + LTR12 LTR ERV1 1 826 0 261 336 19 101 chr15 33194231 33194499 -68186022 + L2 LINE L2 3020 3265 -7 365 187 54 35 chr15 33194631 33194751 -68185770 + MIR SINE MIR 18 139 -69 585 251 54 49 chr15 33194877 33195080 -68185441 + MIR SINE MIR 46 249 -13 429 129 0 0 chr15 33198194 33198264 -68182257 + (CATA)n Simple_repeat Simple_repeat 2 71 0 34 0 0 0 chr15 33200081 33200115 -68180406 + AT_rich Low_complexity Low_complexity 1 34 0 1278 230 48 13 chr15 33200115 33200428 -68180093 - MER58B DNA MER1_type -17 324 1 186 297 141 0 chr15 33200488 33200552 -68179969 + MIR3 SINE MIR 105 177 -31 361 366 67 13 chr15 33200824 33201122 -68179399 - LTR16C LTR ERVL -18 473 160 2547 71 0 0 chr15 33201130 33201441 -68179080 - AluY SINE Alu 0 311 1 601 306 81 14 chr15 33202904 33203126 -68177395 + MIR SINE MIR 2 238 -24 1286 236 90 48 chr15 33203144 33203340 -68177181 + MLT1D LTR MaLR 1 187 -318 2275 45 13 36 chr15 33203340 33203649 -68176872 + AluY SINE Alu 3 304 -7 1286 236 90 48 chr15 33203649 33203670 -68176851 + MLT1D LTR MaLR 187 206 -299 288 0 0 0 chr15 33203670 33203702 -68176819 + (CA)n Simple_repeat Simple_repeat 1 32 0 1286 236 90 48 chr15 33203702 33203961 -68176560 + MLT1D LTR MaLR 206 498 -7 1860 144 22 0 chr15 33203977 33204289 -68176232 - AluSx SINE Alu 0 319 2 1108 255 76 58 chr15 33204299 33204761 -68175760 - MLT1F1 LTR MaLR -9 558 89 615 129 0 0 chr15 33205086 33205171 -68175350 + AluY SINE Alu 1 85 -225 3912 165 28 12 chr15 33205273 33205545 -68174976 + L1MA7 LINE L1 5513 5779 -512 294 29 0 0 chr15 33205545 33205580 -68174941 + (CA)n Simple_repeat Simple_repeat 2 36 0 3912 165 28 12 chr15 33205580 33206072 -68174449 + L1MA7 LINE L1 5779 6289 -2 2062 207 21 52 chr15 33206250 33206654 -68173867 + MLT1D LTR MaLR 1 387 -118 2217 133 16 21 chr15 33206654 33207031 -68173490 - THE1C LTR MaLR 0 375 1 2062 207 21 52 chr15 33207031 33207147 -68173374 + MLT1D LTR MaLR 387 505 0 902 247 0 0 chr15 33207397 33207575 -68172946 + MER45A DNA AcHobo 1 178 0 204 209 0 0 chr15 33208371 33208414 -68172107 + A-rich Low_complexity Low_complexity 2 44 0 364 286 0 0 chr15 33208758 33208877 -68171644 + MER113 DNA MER1_type? 4 122 -399 274 306 152 84 chr15 33209092 33209415 -68171106 + L2 LINE L2 2928 3272 0 506 206 55 34 chr15 33211379 33211574 -68168947 - LTR45B LTR ERV1 0 489 331 230 188 0 21 chr15 33211621 33211669 -68168852 - MER72 LTR ERV1 -246 476 430 315 122 0 0 chr15 33211988 33212037 -68168484 + (CA)n Simple_repeat Simple_repeat 2 50 0 458 220 8 83 chr15 33212040 33212172 -68168349 + L2 LINE L2 3192 3313 0 948 18 0 0 chr15 33216660 33216771 -68163750 - L1PA5 LINE L1 -3 6151 6041 826 316 105 36 chr15 33217629 33218332 -68162189 + L2 LINE L2 2511 3255 -58 351 243 164 0 chr15 33220763 33220903 -68159618 + MER3 DNA MER1_type 47 209 0 776 155 0 39 chr15 33222262 33222391 -68158130 - FLAM_A SINE Alu -9 124 1 1829 168 28 15 chr15 33222519 33222911 -68157610 - L1PA11 LINE L1 0 6174 5778 8664 134 14 1 chr15 33223016 33224502 -68156019 - L1PA11 LINE L1 -850 5296 3792 542 275 16 56 chr15 33224606 33224883 -68155638 + MIR3 SINE MIR 1 252 -10 209 267 50 17 chr15 33225423 33225483 -68155038 + L2 LINE L2 3251 3312 -1 663 287 87 33 chr15 33226499 33227027 -68153494 + L1ME LINE L1 4499 4997 -1165 1966 225 113 12 chr15 33227027 33227542 -68152979 - MLT1F1 LTR MaLR 0 567 1 663 287 87 33 chr15 33227542 33227967 -68152554 + L1ME LINE L1 4997 5506 -656 17805 157 44 6 chr15 33228070 33231332 -68149189 + L1MA2 LINE L1 282 3667 -3898 809 150 7 0 chr15 33231395 33231548 -68148973 + L1MA2 LINE L1 4837 4990 -2575 9852 92 5 3 chr15 33231550 33233049 -68147472 + L1PA7 LINE L1 2324 3825 -2321 11239 84 9 34 chr15 33233163 33235592 -68144929 + L1PA7 LINE L1 3743 6154 0 3713 159 44 7 chr15 33235592 33236338 -68144183 + L1MA2 LINE L1 4980 5753 -1812 * 10826 198 40 17 chr15 33236334 33240009 -68140512 - L1PB1 LINE L1 -8 6859 3093 2202 99 20 3 chr15 33240119 33240421 -68140100 - AluSq SINE Alu -6 307 1 2253 192 2 2 chr15 33240421 33240879 -68139642 - L1 LINE L1 -3369 2777 2320 * 2649 179 8 4 chr15 33240865 33241384 -68139137 - L1PB1 LINE L1 -4951 1912 1392 510 290 5 10 chr15 33241381 33241574 -68138947 - L1PB1 LINE L1 -6666 197 6 * 6220 140 31 2 chr15 33241596 33243521 -68137000 + L1MA2 LINE L1 5736 7716 -7 669 263 47 38 chr15 33243619 33243855 -68136666 - MLT1K LTR MaLR -209 379 142 260 30 0 0 chr15 33244537 33244570 -68135951 + L1MA1 LINE L1 5963 5995 -307 344 266 184 0 chr15 33244929 33245038 -68135483 + MER94 DNA DNA 5 133 -1 2308 106 0 0 chr15 33245577 33245879 -68134642 - AluSg SINE Alu -8 302 1 15773 183 33 12 chr15 33246558 33247132 -68133389 - L1PA15 LINE L1 -13 7590 7030 2178 128 73 14 chr15 33247132 33247476 -68133045 - THE1B LTR MaLR 0 364 1 11934 93 5 0 chr15 33247476 33249048 -68131473 - THE1B-int LTR MaLR 0 1580 1 2044 121 92 15 chr15 33249048 33249386 -68131135 - THE1B LTR MaLR 0 364 1 15773 183 33 12 chr15 33249386 33252957 -68127564 - L1PA15 LINE L1 -573 7030 3538 2067 125 3 3 chr15 33252957 33253245 -68127276 + AluSx SINE Alu 1 288 -24 15773 183 33 12 chr15 33253245 33253856 -68126665 - L1PA15 LINE L1 -4065 3538 2942 1761 152 76 0 chr15 33253856 33254146 -68126375 - AluSx SINE Alu 0 312 1 15773 183 33 12 chr15 33254146 33254548 -68125973 - L1PA15 LINE L1 -4661 2942 2313 249 83 0 0 chr15 33255733 33255769 -68124752 + (CA)n Simple_repeat Simple_repeat 2 37 0 180 97 0 0 chr15 33256929 33256960 -68123561 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 256 316 123 19 chr15 33257900 33258055 -68122466 + MIR3 SINE MIR 16 186 -22 35 0 0 0 chr15 33258298 33258333 -68122188 + AT_rich Low_complexity Low_complexity 1 35 0 221 98 24 0 chr15 33264253 33264294 -68116227 + (CA)n Simple_repeat Simple_repeat 2 43 0 198 71 0 0 chr15 33267366 33267394 -68113127 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 266 86 0 0 chr15 33268274 33268309 -68112212 + U2 snRNA snRNA 1 35 -153 207 299 26 26 chr15 33268417 33268494 -68112027 + MIR SINE MIR 58 134 -74 2198 156 17 0 chr15 33269133 33269486 -68111035 - MER47A DNA MER2_type 0 366 8 514 259 52 29 chr15 33269774 33269948 -68110573 + LTR41 LTR ERVL 1 178 -595 727 307 106 10 chr15 33270820 33271123 -68109398 + MLT1I LTR MaLR 75 406 -3 234 362 24 47 chr15 33271976 33272034 -68108487 + MIR SINE MIR 23 81 -127 496 280 15 0 chr15 33272034 33272166 -68108355 - MER94 DNA DNA 0 134 1 234 362 24 47 chr15 33272166 33272234 -68108287 + MIR SINE MIR 81 146 -62 320 216 45 11 chr15 33272395 33272483 -68108038 - L2 LINE L2 -2 3311 3221 243 326 122 0 chr15 33273856 33273954 -68106567 + L2 LINE L2 3163 3272 0 580 29 0 0 chr15 33274495 33274565 -68105956 - L1PA5 LINE L1 -6 6148 6079 22 35 0 0 chr15 33275435 33275464 -68105057 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr15 33275566 33275600 -68104921 + AT_rich Low_complexity Low_complexity 1 34 0 230 294 0 24 chr15 33275736 33275791 -68104730 + (TA)n Simple_repeat Simple_repeat 1 55 -28 189 0 0 0 chr15 33275791 33275812 -68104709 + (TG)n Simple_repeat Simple_repeat 2 22 0 230 294 0 24 chr15 33275812 33275841 -68104680 + (TA)n Simple_repeat Simple_repeat 55 83 0 206 204 41 0 chr15 33276216 33276265 -68104256 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 577 210 14 14 chr15 33276291 33276429 -68104092 - Charlie4a DNA MER1_type -6 502 365 1327 182 28 17 chr15 33276548 33276839 -68103682 - Charlie4a DNA MER1_type -176 332 39 185 416 50 12 chr15 33277599 33277760 -68102761 + L2 LINE L2 2887 3053 -219 3453 90 10 19 chr15 33278395 33278915 -68101606 + L1MA3 LINE L1 5791 6305 0 950 281 193 21 chr15 33279124 33279861 -68100660 + L2 LINE L2 2424 3292 -21 360 285 18 19 chr15 33281045 33281190 -68099331 - MIR SINE MIR -66 142 3 441 264 9 0 chr15 33282638 33282744 -68097777 + MIR SINE MIR 96 202 -60 1912 203 101 7 chr15 33282790 33283214 -68097307 - MLT1C LTR MaLR -3 464 1 266 329 112 33 chr15 33283214 33283366 -68097155 - L2 LINE L2 -31 3282 3119 345 192 192 0 chr15 33283385 33283484 -68097037 - Charlie1 DNA MER1_type 0 2761 2644 339 298 53 0 chr15 33283770 33283884 -68096637 - MER5B DNA MER1_type -2 176 57 302 374 84 13 chr15 33284591 33284746 -68095775 - MIR SINE MIR -50 212 47 323 209 46 154 chr15 33286567 33286873 -68093648 + HsTC2 DNA Tc2 1 273 -1625 231 306 64 38 chr15 33286916 33287073 -68093448 + HsTC2 DNA Tc2 510 670 -1228 426 139 0 0 chr15 33287118 33287190 -68093331 + (TG)n Simple_repeat Simple_repeat 1 72 0 378 224 168 40 chr15 33288286 33288411 -68092110 - MIR SINE MIR -117 145 5 1016 201 38 123 chr15 33289154 33289553 -68090968 - MLT1A1 LTR MaLR 0 365 1 220 328 0 0 chr15 33290017 33290081 -68090440 + L2 LINE L2 3245 3308 -5 201 196 0 0 chr15 33290390 33290436 -68090085 + A-rich Low_complexity Low_complexity 1 46 0 799 310 116 35 chr15 33290971 33291455 -68089066 + MLT1K LTR MaLR 48 570 -18 305 299 26 26 chr15 33291723 33291877 -68088644 + L1ME1 LINE L1 5499 5652 -469 2360 87 0 3 chr15 33291880 33292189 -68088332 + AluY SINE Alu 4 311 0 338 250 125 0 chr15 33292395 33292531 -68087990 + L1ME4a LINE L1 5960 6112 -9 531 248 35 138 chr15 33292643 33292933 -68087588 - L3 LINE CR1 -21 1556 1297 311 267 210 47 chr15 33292940 33293149 -68087372 + MIR SINE MIR 17 258 -4 515 355 84 42 chr15 33293174 33293554 -68086967 - L3 LINE CR1 -991 586 191 9130 194 14 3 chr15 33294993 33297006 -68083515 - L1P LINE L1 -723 5428 3394 3476 95 0 0 chr15 33348219 33348692 -68031829 + L1PA8 LINE L1 5696 6168 -4 21 0 0 0 chr15 33348692 33348713 -68031808 + AT_rich Low_complexity Low_complexity 1 21 0 1694 285 147 25 chr15 33348726 33349705 -68030816 - HAL1 LINE L1 -1138 1369 272 180 0 0 0 chr15 33349706 33349726 -68030795 + (T)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr15 33350544 33350573 -68029948 + AT_rich Low_complexity Low_complexity 1 29 0 476 103 10 31 chr15 33351874 33351971 -68028550 + (TTTC)n Simple_repeat Simple_repeat 4 98 0 1671 162 3 50 chr15 33352000 33352303 -68028218 - AluJb SINE Alu -23 289 1 1911 194 136 32 chr15 33352304 33352871 -68027650 - MLT1E2 LTR MaLR 0 626 1 2257 121 3 0 chr15 33353221 33353526 -68026995 - AluSx SINE Alu -6 306 1 270 270 0 0 chr15 33353816 33353879 -68026642 + (CACG)n Simple_repeat Simple_repeat 1 63 0 750 185 0 12 chr15 33355280 33355442 -68025079 + L1ME1 LINE L1 5669 5828 -338 3083 172 32 37 chr15 33355481 33355888 -68024633 - MLT1E3 LTR MaLR 0 624 220 2155 129 0 3 chr15 33355888 33356198 -68024323 - AluSq SINE Alu -4 309 1 3083 172 32 37 chr15 33356198 33356417 -68024104 - MLT1E3 LTR MaLR -404 220 1 1420 120 0 0 chr15 33356743 33356934 -68023587 - AluSq SINE Alu -120 193 3 226 258 61 0 chr15 33358149 33358215 -68022306 + MIR SINE MIR 128 197 -65 25 0 0 0 chr15 33358299 33358324 -68022197 + AT_rich Low_complexity Low_complexity 1 25 0 309 250 0 13 chr15 33358424 33358500 -68022021 + MIR SINE MIR 51 125 -137 969 235 102 56 chr15 33358718 33358864 -68021657 - HAL1 LINE L1 -35 2472 2334 1867 154 27 13 chr15 33358864 33359198 -68021323 - AluSx SINE Alu 0 312 1 969 235 102 56 chr15 33359198 33359571 -68020950 - HAL1 LINE L1 -173 2334 1929 2456 84 89 10 chr15 33359571 33359602 -68020919 - MLT2A1 LTR ERVL 0 444 417 216 0 0 0 chr15 33359602 33359626 -68020895 + (TA)n Simple_repeat Simple_repeat 2 25 0 2456 84 89 10 chr15 33359626 33359985 -68020536 - MLT2A1 LTR ERVL -27 417 23 1567 269 27 16 chr15 33360057 33360571 -68019950 - HAL1 LINE L1 -594 1913 1394 2786 125 2 45 chr15 33360596 33361001 -68019520 + L1P LINE L1 1460 1840 -4306 789 36 27 9 chr15 33361001 33361111 -68019410 - L1PA2 LINE L1 0 6155 6044 2786 125 2 45 chr15 33361111 33361210 -68019311 + L1P LINE L1 1840 1942 -4204 406 239 34 0 chr15 33362475 33362563 -68017958 + MIR SINE MIR 122 212 -50 1865 139 3 38 chr15 33363204 33363520 -68017001 + AluJo SINE Alu 1 305 -7 216 364 25 16 chr15 33363972 33364093 -68016428 + MIR SINE MIR 20 141 -67 20285 88 12 7 chr15 33364409 33367510 -68013011 - L1P LINE L1 -760 5386 2269 3897 200 28 21 chr15 33368318 33369811 -68010710 - L1MB8 LINE L1 0 6178 4682 363 236 24 8 chr15 33369808 33369931 -68010590 - L1MB8 LINE L1 -1737 4409 4285 * 2877 129 0 7 chr15 33369985 33370425 -68010096 - MER83 LTR ERV1 -11 437 1 1625 239 16 57 chr15 33370425 33370969 -68009552 - L1MB8 LINE L1 -1908 4238 3717 18460 114 18 28 chr15 33371426 33372541 -68007980 + L1PA8A LINE L1 2140 3266 -2865 2179 105 7 0 chr15 33372541 33372826 -68007695 + AluSc SINE Alu 1 287 -22 18460 114 18 28 chr15 33372826 33375329 -68005192 + L1PA8A LINE L1 3266 5706 -425 1830 61 12 8 chr15 33375429 33375675 -68004846 - AluY SINE Alu -58 253 7 27 0 0 0 chr15 33376418 33376445 -68004076 + AT_rich Low_complexity Low_complexity 1 27 0 3435 130 33 12 chr15 33376877 33376979 -68003542 + L1MA4 LINE L1 5682 5780 -520 189 0 0 0 chr15 33376979 33377000 -68003521 + (TA)n Simple_repeat Simple_repeat 1 21 0 3435 130 33 12 chr15 33377000 33377498 -68003023 + L1MA4 LINE L1 5780 6295 -5 22 0 0 0 chr15 33377603 33377625 -68002896 + AT_rich Low_complexity Low_complexity 1 22 0 568 247 119 10 chr15 33378296 33378460 -68002061 + LTR33 LTR ERVL 1 191 -330 324 0 0 0 chr15 33378460 33378496 -68002025 + (GA)n Simple_repeat Simple_repeat 1 36 0 568 247 119 10 chr15 33378496 33378525 -68001996 + LTR33 LTR ERVL 191 215 -306 183 129 0 0 chr15 33378857 33378888 -68001633 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2137 80 7 37 chr15 33378890 33379190 -68001331 - AluY SINE Alu -20 291 1 340 299 62 0 chr15 33379332 33379509 -68001012 - L1ME LINE L1 -567 5603 5416 413 255 83 26 chr15 33379608 33379910 -68000611 - L1ME LINE L1 -847 5299 4981 917 191 40 10 chr15 33380012 33380238 -68000283 - MSTD LTR MaLR 0 396 204 264 188 0 0 chr15 33380250 33380319 -68000202 + GA-rich Low_complexity Low_complexity 2 70 0 1247 171 14 9 chr15 33380322 33380544 -67999977 - MSTD LTR MaLR -173 223 1 636 246 74 40 chr15 33380547 33380872 -67999649 - L1ME LINE L1 -1302 4844 4509 2282 113 0 0 chr15 33380957 33381257 -67999264 - AluSx SINE Alu -12 300 1 4908 111 8 19 chr15 33381313 33381862 -67998659 - L1PA16 LINE L1 -8 6158 5618 1998 141 0 26 chr15 33381862 33382167 -67998354 + AluSx SINE Alu 1 297 -15 4908 111 8 19 chr15 33382167 33382375 -67998146 - L1PA16 LINE L1 -548 5618 5409 5855 64 1 7 chr15 33382477 33382859 -67997662 + L1PA7 LINE L1 5398 5776 -378 2254 105 0 7 chr15 33382859 33383163 -67997358 + AluY SINE Alu 1 302 -9 5855 64 1 7 chr15 33383163 33383541 -67996980 + L1PA7 LINE L1 5776 6154 0 1147 155 26 23 chr15 33384040 33384304 -67996217 + L1MA6 LINE L1 6031 6295 -5 671 253 92 52 chr15 33385207 33385456 -67995065 + MIR SINE MIR 3 261 -1 378 300 89 39 chr15 33387611 33387791 -67992730 - MIR3 SINE MIR -1 207 19 211 243 178 47 chr15 33387937 33388044 -67992477 + MER5A DNA MER1_type 44 164 -25 180 0 0 0 chr15 33388083 33388103 -67992418 + (A)n Simple_repeat Simple_repeat 1 20 0 203 256 0 0 chr15 33388687 33388726 -67991795 - MIR SINE MIR -141 121 83 266 264 80 24 chr15 33389098 33389223 -67991298 + MER53 DNA DNA 1 132 -57 182 159 14 159 chr15 33389753 33389822 -67990699 + MER5A DNA MER1_type 99 157 -32 206 245 75 0 chr15 33390185 33390238 -67990283 + MER5B DNA MER1_type 122 178 0 1544 157 0 23 chr15 33390950 33391212 -67989309 + AluSx SINE Alu 50 305 -7 203 345 17 0 chr15 33391414 33391472 -67989049 + G-rich Low_complexity Low_complexity 3 61 0 2138 109 0 3 chr15 33391652 33391961 -67988560 + AluSc SINE Alu 1 308 0 208 218 23 0 chr15 33393241 33393328 -67987193 + CT-rich Low_complexity Low_complexity 2 90 0 247 197 307 58 chr15 33393832 33393969 -67986552 + MIR3 SINE MIR 31 201 -7 185 267 0 22 chr15 33394931 33394976 -67985545 + L2 LINE L2 3217 3260 -12 201 195 0 0 chr15 33395010 33395051 -67985470 + GA-rich Low_complexity Low_complexity 2 42 0 2328 71 37 0 chr15 33395056 33395352 -67985169 + AluSp SINE Alu 1 307 -6 24 32 0 0 chr15 33395392 33395423 -67985098 + AT_rich Low_complexity Low_complexity 1 31 0 2041 109 0 56 chr15 33395553 33395856 -67984665 + AluSx SINE Alu 1 286 -26 2134 87 0 93 chr15 33395912 33396245 -67984276 + AluY SINE Alu 1 302 -9 2247 116 0 3 chr15 33396256 33396558 -67983963 + AluSc SINE Alu 1 301 -8 180 200 0 0 chr15 33396706 33396746 -67983775 + (TA)n Simple_repeat Simple_repeat 1 40 0 306 0 0 0 chr15 33397460 33397494 -67983027 + (TG)n Simple_repeat Simple_repeat 1 34 0 12474 104 9 29 chr15 33397687 33400255 -67980266 - L1P3 LINE L1 -3886 2575 1 268 315 0 56 chr15 33400592 33400665 -67979856 + MER5A DNA MER1_type 55 122 -67 2031 145 7 0 chr15 33400665 33400968 -67979553 - AluJb SINE Alu -7 305 1 268 315 0 56 chr15 33400968 33401002 -67979519 + MER5A DNA MER1_type 122 156 -33 1852 167 17 3 chr15 33401896 33402255 -67978266 + L1MB7 LINE L1 5818 6181 -3 2407 80 0 10 chr15 33402391 33402693 -67977828 - AluY SINE Alu -12 299 1 216 0 0 0 chr15 33404575 33404599 -67975922 + (A)n Simple_repeat Simple_repeat 1 24 0 967 274 85 0 chr15 33404986 33405292 -67975229 + LTR33 LTR ERVL 3 334 -187 375 227 31 0 chr15 33405330 33405427 -67975094 + LTR33 LTR ERVL 422 521 0 286 252 79 0 chr15 33405463 33405590 -67974931 - L1ME2 LINE L1 -9 6155 6019 237 280 273 15 chr15 33406888 33407020 -67973501 + MIR3 SINE MIR 38 203 -5 2370 113 123 3 chr15 33407166 33407548 -67972973 - MSTA LTR MaLR 0 428 1 743 218 96 24 chr15 33407825 33408213 -67972308 + MER77 LTR ERV1 177 599 -6 1790 200 40 33 chr15 33409003 33409491 -67971030 + MER110A LTR ERV1 3 477 -7 1073 211 4 18 chr15 33409832 33410059 -67970462 + MER58A DNA MER1_type 1 224 0 629 203 60 0 chr15 33410603 33410736 -67969785 + L2 LINE L2 2623 2763 -551 1782 239 105 0 chr15 33410736 33411250 -67969271 + MER69 DNA AcHobo 1 568 -1958 1008 165 99 116 chr15 33411248 33411774 -67968747 + MER69 DNA AcHobo 2010 2526 0 * 1220 267 63 18 chr15 33411777 33412300 -67968221 + L2 LINE L2 2763 3311 -2 317 289 44 89 chr15 33412802 33412982 -67967539 + MER5A DNA MER1_type 18 189 0 493 254 59 18 chr15 33413090 33413259 -67967262 + MER5B DNA MER1_type 3 178 0 378 257 96 29 chr15 33413356 33413492 -67967029 - MIR3 SINE MIR -31 177 33 284 372 11 49 chr15 33413688 33413871 -67966650 - MER5A DNA MER1_type 0 189 14 852 252 37 9 chr15 33413938 33414156 -67966365 - MER58A DNA MER1_type 0 224 1 283 172 31 16 chr15 33416210 33416274 -67964247 - MLT1L LTR MaLR -337 278 214 1573 128 0 113 chr15 33416452 33416787 -67963734 + AluJb SINE Alu 1 297 -5 315 0 0 0 chr15 33417497 33417532 -67962989 + (TG)n Simple_repeat Simple_repeat 2 36 0 291 54 0 0 chr15 33417536 33417573 -67962948 + (GA)n Simple_repeat Simple_repeat 2 38 0 2111 132 3 0 chr15 33417585 33417881 -67962640 - AluSx SINE Alu -15 297 1 2705 161 121 89 chr15 33417952 33418148 -67962373 + L1MC3 LINE L1 6907 7095 -690 237 242 16 0 chr15 33418148 33418210 -67962311 + MLT1F1 LTR MaLR 52 114 -453 2705 161 121 89 chr15 33418210 33418793 -67961728 + L1MC3 LINE L1 7095 7774 -11 381 292 10 51 chr15 33418913 33419108 -67961413 + L1MEd LINE L1 1067 1253 -4866 329 227 185 34 chr15 33419139 33419258 -67961263 + L1M4 LINE L1 2318 2454 -4395 544 238 31 65 chr15 33419634 33419850 -67960671 - MLT1J1 LTR MaLR -260 251 5 356 254 67 49 chr15 33421023 33421247 -67959274 + L1M4 LINE L1 4663 4890 -1958 3218 200 70 45 chr15 33421402 33422406 -67958115 + L1 LINE L1 3957 4985 -1161 290 368 8 8 chr15 33423152 33423269 -67957252 + MIR3 SINE MIR 52 168 -40 541 300 57 14 chr15 33424624 33424986 -67955535 - L1MEd LINE L1 -857 1633 1162 245 307 87 7 chr15 33425104 33425254 -67955267 + HAL1 LINE L1 1289 1450 -1057 190 342 86 26 chr15 33425309 33425426 -67955095 - MIR SINE MIR -62 146 23 1064 158 41 54 chr15 33427534 33427755 -67952766 + MER20 DNA MER1_type 2 219 0 340 307 99 0 chr15 33427840 33427941 -67952580 - L2 LINE L2 -2 3270 3160 217 309 73 57 chr15 33428918 33429041 -67951480 - L2 LINE L2 -10 3262 3138 2169 183 8 5 chr15 33429544 33429933 -67950588 + MLT1B LTR MaLR 1 390 0 802 241 23 36 chr15 33430687 33430907 -67949614 - L2 LINE L2 0 3313 3097 536 279 96 14 chr15 33431029 33431237 -67949284 + MIR SINE MIR 32 256 -6 263 372 51 0 chr15 33431263 33431400 -67949121 + MIR SINE MIR 109 252 -10 1571 215 51 15 chr15 33432026 33432055 -67948466 - MLT2F LTR ERVL -14 649 623 342 0 0 0 chr15 33432055 33432093 -67948428 + (TG)n Simple_repeat Simple_repeat 2 39 0 1571 215 51 15 chr15 33432093 33432453 -67948068 - MLT2F LTR ERVL -40 623 246 25 51 0 0 chr15 33432475 33432514 -67948007 + AT_rich Low_complexity Low_complexity 1 39 0 928 78 78 0 chr15 33432747 33432876 -67947645 - MER85 DNA T2_type 0 139 1 23 33 0 0 chr15 33433302 33433332 -67947189 + AT_rich Low_complexity Low_complexity 1 30 0 315 71 0 0 chr15 33434120 33434162 -67946359 + (T)n Simple_repeat Simple_repeat 1 42 0 263 340 110 10 chr15 33435665 33435765 -67944756 + MIR SINE MIR 24 133 -75 261 0 0 0 chr15 33436492 33436521 -67944000 + (TG)n Simple_repeat Simple_repeat 1 29 0 329 222 74 0 chr15 33437186 33437267 -67943254 - L2 LINE L2 -1 3312 3226 448 238 6 81 chr15 33437269 33437429 -67943092 + FRAM SINE Alu 1 145 -31 204 40 0 0 chr15 33437432 33437457 -67943064 + (TTG)n Simple_repeat Simple_repeat 2 26 0 181 192 39 39 chr15 33437459 33437511 -67943010 - L2 LINE L2 -90 3223 3172 202 294 11 76 chr15 33437697 33437789 -67942732 - MIR SINE MIR -63 145 60 21 36 0 0 chr15 33438712 33438740 -67941781 + GC_rich Low_complexity Low_complexity 1 28 0 247 290 93 19 chr15 33439513 33439620 -67940901 - MIR3 SINE MIR 0 208 94 913 199 71 50 chr15 33439904 33440241 -67940280 + MER2 DNA MER2_type 1 344 0 769 281 66 9 chr15 33440423 33440651 -67939870 - MIR SINE MIR -20 242 2 356 316 35 40 chr15 33440966 33441194 -67939327 - MLT1I LTR MaLR -180 229 3 267 338 127 0 chr15 33442941 33443083 -67937438 - L2 LINE L2 -9 3263 3104 23 0 0 0 chr15 33443900 33443923 -67936598 + AT_rich Low_complexity Low_complexity 1 23 0 1210 194 5 0 chr15 33444987 33445204 -67935317 + MER58A DNA MER1_type 1 218 -6 1943 152 7 3 chr15 33445996 33446285 -67934236 + AluSx SINE Alu 5 294 -18 637 269 57 24 chr15 33447218 33447430 -67933091 + MIR SINE MIR 20 238 -24 620 227 16 0 chr15 33447430 33447558 -67932963 - MLT1H LTR MaLR 0 549 420 2491 75 0 0 chr15 33447579 33447887 -67932634 - AluY SINE Alu -3 308 1 314 273 8 53 chr15 33447903 33448035 -67932486 - MLT1H LTR MaLR -123 432 307 323 222 174 28 chr15 33448094 33448238 -67932283 - MLT1H LTR MaLR -255 294 130 344 278 56 63 chr15 33448485 33448611 -67931910 - L2 LINE L2 -7 3306 3182 2241 105 7 3 chr15 33448806 33449110 -67931411 - AluSq SINE Alu -8 305 1 573 208 8 32 chr15 33449142 33449267 -67931254 + FLAM_C SINE Alu 3 124 -9 197 276 13 92 chr15 33449920 33449996 -67930525 - L2 LINE L2 -2 3311 3242 268 276 26 26 chr15 33450318 33450394 -67930127 + L2 LINE L2 3180 3255 -17 206 167 24 0 chr15 33450846 33450888 -67929633 + CT-rich Low_complexity Low_complexity 1 43 0 263 289 56 33 chr15 33451272 33451362 -67929159 - MIR SINE MIR -3 259 168 207 395 53 0 chr15 33452261 33452375 -67928146 - L2 LINE L2 -731 2583 2464 252 261 0 68 chr15 33452428 33452516 -67928005 + MIR SINE MIR 131 212 -50 299 353 39 10 chr15 33452555 33452657 -67927864 + L2 LINE L2 3132 3236 -36 1065 110 0 14 chr15 33452950 33453096 -67927425 + AluSc SINE Alu 60 203 -106 182 333 37 56 chr15 33453164 33453272 -67927249 + L2 LINE L2 3146 3251 -21 514 330 43 9 chr15 33453672 33453902 -67926619 - MIR SINE MIR -12 250 13 910 223 22 11 chr15 33453906 33454090 -67926431 - MER5A DNA MER1_type 0 189 4 994 168 97 11 chr15 33454184 33454391 -67926130 + AluJo SINE Alu 84 306 0 323 304 50 50 chr15 33454498 33454758 -67925763 + MER65A LTR ERV1 186 445 0 2755 247 82 14 chr15 33455207 33455907 -67924614 + L1ME1 LINE L1 3206 4001 -2145 2824 136 9 5 chr15 33455907 33456333 -67924188 - MSTA LTR MaLR 0 428 1 2755 247 82 14 chr15 33456333 33456670 -67923851 + L1ME1 LINE L1 4001 4314 -1832 287 228 38 0 chr15 33456661 33456740 -67923781 + L1M4 LINE L1 5149 5230 -916 * 42274 37 2 6 chr15 33456758 33462931 -67917590 - L1PA3 LINE L1 -1 6154 7 246 208 0 0 chr15 33462926 33462974 -67917547 + L1M4 LINE L1 5206 5253 -893 * 2712 246 49 15 chr15 33462990 33463922 -67916599 + L1ME1 LINE L1 4313 5276 -870 227 255 40 121 chr15 33463936 33464085 -67916436 - L1ME2 LINE L1 -83 6081 5945 2327 232 25 50 chr15 33464089 33464885 -67915636 + L1ME1 LINE L1 5285 6060 -106 245 218 53 123 chr15 33464835 33465005 -67915516 + L1MA10 LINE L1 6170 6327 -7 * 370 289 58 16 chr15 33465227 33465348 -67915173 + MIR3 SINE MIR 37 162 -46 465 343 7 7 chr15 33466198 33466335 -67914186 + MIR3 SINE MIR 22 158 -50 247 216 81 0 chr15 33466495 33466569 -67913952 - MER113 DNA MER1_type? -412 109 30 244 257 68 10 chr15 33466633 33466766 -67913755 + MLT1J2 LTR MaLR 75 219 -190 708 114 7 40 chr15 33466807 33466956 -67913565 + L1PA10 LINE L1 5940 6083 -85 1057 166 6 135 chr15 33467059 33467152 -67913369 - L1 LINE L1 -1438 4708 4605 2109 119 0 0 chr15 33467152 33467438 -67913083 - AluSx SINE Alu -26 286 1 1057 166 6 135 chr15 33467438 33467699 -67912822 - L1 LINE L1 -1541 4605 4400 412 273 197 43 chr15 33467701 33468005 -67912516 - L2 LINE L2 -40 3273 2923 2163 108 0 45 chr15 33468005 33468319 -67912202 + AluSg SINE Alu 1 300 -10 283 284 20 39 chr15 33468348 33468450 -67912071 + MIR3 SINE MIR 102 201 -7 231 36 0 0 chr15 33470186 33470214 -67910307 + (T)n Simple_repeat Simple_repeat 1 28 0 645 253 74 11 chr15 33470234 33470424 -67910097 - MIR SINE MIR -14 248 47 377 307 89 71 chr15 33470809 33471135 -67909386 + L2 LINE L2 2933 3264 -8 1312 122 0 21 chr15 33471467 33471655 -67908866 - AluSg/x SINE Alu -6 304 121 331 320 70 0 chr15 33471736 33471836 -67908685 - MER5B DNA MER1_type -71 107 1 2177 121 0 0 chr15 33472763 33473053 -67907468 + AluSc SINE Alu 1 290 -19 3417 83 20 0 chr15 33473895 33474339 -67906182 + MLT2A2 LTR ERVL 1 453 0 233 271 100 0 chr15 33476457 33476527 -67903994 + L3b LINE CR1 1375 1451 -132 294 323 0 84 chr15 33476679 33476834 -67903687 - MIR SINE MIR -55 207 66 228 312 0 104 chr15 33478194 33478319 -67902202 + L2 LINE L2 2565 2676 -638 193 292 31 0 chr15 33479075 33479140 -67901381 + L2 LINE L2 2980 3046 -226 489 213 0 0 chr15 33479820 33479900 -67900621 + AluJ/FLAM SINE Alu 1 80 -232 1075 278 81 25 chr15 33480000 33480553 -67899968 + L1M4 LINE L1 2339 2929 -3217 1732 171 34 3 chr15 33480553 33480846 -67899675 + AluJb SINE Alu 1 302 -10 1075 278 81 25 chr15 33480846 33480885 -67899636 + L1M4 LINE L1 2929 2964 -3182 * 5193 124 45 40 chr15 33480884 33482071 -67898450 + L1MA7 LINE L1 5098 6288 -3 1645 239 117 27 chr15 33482094 33482516 -67898005 + L1M4 LINE L1 2975 3358 -2788 1334 164 50 0 chr15 33482516 33482797 -67897724 - L1MA8 LINE L1 -1 6290 5996 1645 239 117 27 chr15 33482797 33483230 -67897291 + L1M4 LINE L1 3358 3907 -2239 335 253 32 21 chr15 33483441 33483536 -67896985 + L2 LINE L2 3218 3313 0 300 259 43 86 chr15 33483661 33483823 -67896698 - MLT1J LTR MaLR -332 179 25 2386 62 3 0 chr15 33484071 33484362 -67896159 - AluY SINE Alu -15 296 5 1120 60 0 0 chr15 33484727 33484861 -67895660 + AluSc SINE Alu 1 134 -175 262 0 0 0 chr15 33484861 33484891 -67895630 - L1P2 LINE L1 -494 5660 5631 * 503 60 19 0 chr15 33484876 33484958 -67895563 + L1PA7 LINE L1 6030 6114 -40 2542 61 0 0 chr15 33486405 33486715 -67893806 - AluY SINE Alu -1 310 1 207 0 0 0 chr15 33487613 33487636 -67892885 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2052 117 0 0 chr15 33487638 33487920 -67892601 - AluSx SINE Alu -30 282 1 22 65 0 0 chr15 33488947 33488978 -67891543 + AT_rich Low_complexity Low_complexity 1 31 0 304 250 125 27 chr15 33489919 33490031 -67890490 - MIR SINE MIR -66 142 20 407 330 37 42 chr15 33490083 33490298 -67890223 + MIR SINE MIR 18 231 -31 1391 218 44 49 chr15 33490703 33491070 -67889451 + MLT1A1 LTR MaLR 1 365 0 824 274 43 4 chr15 33492786 33493020 -67887501 - MIR SINE MIR 0 262 20 2216 99 10 10 chr15 33493165 33493468 -67887053 + AluSc SINE Alu 1 303 -6 225 258 22 22 chr15 33493776 33493865 -67886656 + GA-rich Low_complexity Low_complexity 3 91 0 253 320 131 10 chr15 33494085 33494255 -67886266 - MIR3 SINE MIR -60 202 4 544 278 48 48 chr15 33494412 33494639 -67885882 + MIR SINE MIR 36 262 0 240 54 0 108 chr15 33495231 33495305 -67885216 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 275 321 0 12 chr15 33495614 33495695 -67884826 - MER5B DNA MER1_type -98 80 1 2152 120 7 0 chr15 33495739 33496038 -67884483 - AluSx SINE Alu -6 306 6 272 233 48 39 chr15 33496160 33496263 -67884258 - L1ME LINE L1 -460 5661 5558 346 253 71 26 chr15 33497269 33497412 -67883109 - MIR SINE MIR -40 168 19 2423 70 0 10 chr15 33497605 33497919 -67882602 + AluY SINE Alu 1 311 0 298 210 12 62 chr15 33498181 33498262 -67882259 + L2 LINE L2 3191 3267 -5 * 392 292 125 7 chr15 33498252 33498396 -67882125 + MIR3 SINE MIR 12 172 -36 2200 102 7 7 chr15 33498455 33498759 -67881762 - AluSp SINE Alu -9 304 1 254 281 61 89 chr15 33498856 33499102 -67881419 + MLT1K LTR MaLR 192 430 -158 619 193 0 62 chr15 33499573 33499626 -67880895 + MER96B DNA MER1_type? 247 302 -115 2473 58 3 13 chr15 33499626 33499938 -67880583 - AluY SINE Alu -2 309 1 619 193 0 62 chr15 33499938 33500060 -67880461 + MER96B DNA MER1_type? 302 411 -6 1816 86 93 15 chr15 33500311 33500580 -67879941 + AluY SINE Alu 1 290 -21 414 264 192 0 chr15 33500815 33500940 -67879581 + MER5A DNA MER1_type 40 188 -1 2275 98 0 0 chr15 33500977 33501262 -67879259 - AluSx SINE Alu -27 285 1 180 0 0 0 chr15 33501588 33501608 -67878913 + (A)n Simple_repeat Simple_repeat 1 20 0 39 50 0 0 chr15 33501981 33502041 -67878480 + AT_rich Low_complexity Low_complexity 1 60 0 208 350 128 0 chr15 33502083 33502200 -67878321 - L2 LINE L2 -674 2640 2509 201 330 19 28 chr15 33502221 33502327 -67878194 - L2 LINE L2 -96 3217 3113 1612 147 131 19 chr15 33502796 33503108 -67877413 + MER7A DNA MER2_type 1 345 -1 2352 102 0 0 chr15 33504641 33504944 -67875577 + AluSq SINE Alu 1 303 -10 1686 188 4 0 chr15 33505310 33505586 -67874935 - AluJo SINE Alu -35 277 1 501 273 27 96 chr15 33505987 33506129 -67874392 - L1ME LINE L1 -297 5824 5674 1692 138 78 18 chr15 33506129 33506411 -67874110 + AluSx SINE Alu 1 299 -13 501 273 27 96 chr15 33506411 33506748 -67873773 - L1ME LINE L1 -447 5674 5378 2263 111 16 26 chr15 33506852 33507231 -67873290 + THE1C LTR MaLR 1 375 0 799 263 61 32 chr15 33507726 33507973 -67872548 - MIR SINE MIR -1 261 8 233 326 11 0 chr15 33508052 33508141 -67872380 + GA-rich Low_complexity Low_complexity 3 92 0 770 194 129 40 chr15 33508621 33508822 -67871699 + MER20 DNA MER1_type 1 219 0 2165 116 7 3 chr15 33508941 33509243 -67871278 + AluSx SINE Alu 1 303 -9 300 295 86 9 chr15 33509789 33509894 -67870627 - MIR SINE MIR -114 148 36 241 305 32 0 chr15 33510108 33510203 -67870318 - Charlie7 DNA MER1_type -2513 99 2 589 221 11 50 chr15 33510570 33510751 -67869770 - AluYa5 SINE Alu 0 311 138 232 259 0 25 chr15 33510985 33511066 -67869455 - L1MC/D LINE L1 -1878 5930 5852 384 320 150 18 chr15 33511127 33511508 -67869013 - L1MC/D LINE L1 -2074 5734 5304 303 257 137 68 chr15 33511510 33511817 -67868704 - L1MC/D LINE L1 -853 5293 4966 28 48 0 0 chr15 33511848 33511890 -67868631 + AT_rich Low_complexity Low_complexity 1 42 0 261 0 0 0 chr15 33511893 33511922 -67868599 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1657 206 0 0 chr15 33511924 33512206 -67868315 - AluJo SINE Alu -30 282 1 1282 242 59 10 chr15 33514710 33515102 -67865419 + LTR33 LTR ERVL 14 424 -97 526 278 142 0 chr15 33515404 33515583 -67864938 - MIR SINE MIR -19 243 42 1078 173 128 48 chr15 33515780 33515934 -67864587 - MLT1B LTR MaLR 0 390 250 405 0 0 0 chr15 33515934 33515979 -67864542 + (TG)n Simple_repeat Simple_repeat 2 46 0 1078 173 128 48 chr15 33515979 33516182 -67864339 - MLT1B LTR MaLR -140 250 4 356 342 107 0 chr15 33517464 33517651 -67862870 - L3b LINE CR1 -130 1453 1247 1582 132 79 84 chr15 33518531 33518612 -67861909 + MLT2D LTR ERVL 1 81 -333 1525 154 0 0 chr15 33518612 33518839 -67861682 - AluSg/x SINE Alu 0 310 84 1582 132 79 84 chr15 33518839 33519136 -67861385 + MLT2D LTR ERVL 81 377 -37 183 333 115 10 chr15 33519403 33519499 -67861022 + L2 LINE L2 2696 2801 -513 278 219 62 0 chr15 33519499 33519563 -67860958 + MER94 DNA DNA 1 68 -66 492 280 37 115 chr15 33519583 33519958 -67860563 + L2 LINE L2 2843 3188 -84 224 296 122 32 chr15 33519996 33520194 -67860327 - MIR SINE MIR -46 216 5 807 107 0 8 chr15 33520712 33520834 -67859687 + AluSc SINE Alu 14 134 -175 698 108 27 0 chr15 33520849 33520960 -67859561 + L1PA6 LINE L1 6030 6143 -11 1206 158 0 0 chr15 33520989 33521172 -67859349 + AluSg/x SINE Alu 124 306 -6 679 202 0 0 chr15 33521354 33521483 -67859038 - FLAM_C SINE Alu 0 133 5 728 146 0 69 chr15 33521910 33522054 -67858467 + FLAM_A SINE Alu 6 139 -3 195 290 72 0 chr15 33523217 33523286 -67857235 - L2 LINE L2 -1885 1429 1356 199 262 33 16 chr15 33523573 33523634 -67856887 - L2 LINE L2 -2106 1208 1147 345 339 108 47 chr15 33524005 33524635 -67855886 - L2 LINE L2 -3 3269 2601 448 215 25 16 chr15 33524737 33524858 -67855663 + L1ME4a LINE L1 5545 5666 -455 669 183 0 0 chr15 33524858 33524973 -67855548 + AluSg/x SINE Alu 198 312 0 649 228 149 70 chr15 33524995 33525154 -67855367 + L1ME4a LINE L1 5679 5824 -297 754 183 0 44 chr15 33525154 33525291 -67855230 + FLAM_A SINE Alu 1 131 -2 649 228 149 70 chr15 33525291 33525534 -67854987 + L1ME4a LINE L1 5824 6113 -8 3187 244 83 28 chr15 33526294 33527300 -67853221 + L2 LINE L2 1144 3057 -256 320 83 0 0 chr15 33527300 33527348 -67853173 - MADE1 DNA Mariner -30 50 3 3313 185 43 55 chr15 33527436 33528368 -67852153 - L1MCa LINE L1 -5170 887 46 660 193 6 78 chr15 33528373 33528539 -67851982 + L2 LINE L2 3159 3312 -1 649 308 48 74 chr15 33528583 33528934 -67851587 + L2 LINE L2 2930 3271 -1 1774 233 81 16 chr15 33528978 33529485 -67851036 - MLT1F1 LTR MaLR -25 542 3 2011 111 0 28 chr15 33530587 33530876 -67849645 + AluSq SINE Alu 1 281 -32 319 216 27 45 chr15 33530932 33531043 -67849478 + MIR SINE MIR 98 206 -56 398 264 101 39 chr15 33531876 33532054 -67848467 + MER5A DNA MER1_type 1 189 0 365 325 41 8 chr15 33532189 33532312 -67848209 - L2 LINE L2 -4 3268 3142 1055 186 0 0 chr15 33532775 33532952 -67847569 - MER5B DNA MER1_type 0 178 2 494 279 101 14 chr15 33533846 33534054 -67846467 - MIR SINE MIR 0 262 37 334 316 35 70 chr15 33534131 33534302 -67846219 + MER5B DNA MER1_type 9 173 -5 2342 86 3 13 chr15 33534743 33535057 -67845464 + AluY SINE Alu 1 311 0 532 207 52 9 chr15 33536488 33536604 -67843917 - MIR3 SINE MIR -3 205 85 2367 83 3 3 chr15 33536728 33537028 -67843493 - AluSc SINE Alu -6 303 4 539 271 36 52 chr15 33537230 33537422 -67843099 + MIR SINE MIR 61 249 -13 206 271 49 97 chr15 33537952 33538096 -67842425 + L2 LINE L2 3169 3305 -8 1587 253 140 17 chr15 33538134 33538664 -67841857 - MLT1G1 LTR MaLR 0 595 1 1338 226 64 57 chr15 33539130 33539554 -67840967 - MLT2B1 LTR ERVL 0 520 91 1505 193 54 0 chr15 33539554 33539813 -67840708 + AluJb SINE Alu 7 279 -33 1338 226 64 57 chr15 33539813 33539844 -67840677 - MLT2B1 LTR ERVL -429 91 62 245 79 0 0 chr15 33540069 33540107 -67840414 + L1MC4 LINE L1 7553 7590 -452 967 305 30 44 chr15 33540107 33540543 -67839978 + LTR16B LTR ERVL 4 433 -31 402 186 10 29 chr15 33540549 33540651 -67839870 + L1MC4 LINE L1 7943 8042 0 1898 169 0 13 chr15 33541382 33541683 -67838838 + AluJo SINE Alu 1 297 -15 721 189 61 11 chr15 33541763 33541943 -67838578 + L1MDa LINE L1 2081 2269 -4271 1630 157 139 26 chr15 33541943 33542161 -67838360 + L1MD2 LINE L1 5914 6106 -253 210 91 0 0 chr15 33542161 33542194 -67838327 + (CA)n Simple_repeat Simple_repeat 2 34 0 1630 157 139 26 chr15 33542194 33542364 -67838157 + L1MD2 LINE L1 6106 6346 -13 21 57 0 0 chr15 33543220 33543255 -67837266 + AT_rich Low_complexity Low_complexity 1 35 0 511 158 40 10 chr15 33543513 33543614 -67836907 + L1MC2 LINE L1 6233 6336 -8 205 324 72 18 chr15 33544612 33544723 -67835798 + MIR SINE MIR 34 150 -112 385 272 0 22 chr15 33545396 33545488 -67835033 - MIR SINE MIR -90 118 29 2212 103 7 0 chr15 33545748 33546038 -67834483 - AluSq SINE Alu -20 293 2 303 260 110 47 chr15 33548019 33548146 -67832375 - MIR SINE MIR -78 184 50 186 103 0 0 chr15 33548170 33548199 -67832322 + (TG)n Simple_repeat Simple_repeat 2 30 0 228 119 0 119 chr15 33548458 33548525 -67831996 - L1MC5 LINE L1 -695 7266 7208 592 229 0 0 chr15 33548554 33548672 -67831849 - MER3 DNA MER1_type -85 124 7 1804 152 40 10 chr15 33548936 33549238 -67831283 - AluJb SINE Alu -1 311 1 461 206 28 37 chr15 33549760 33549867 -67830654 - MER7A DNA MER2_type 0 346 241 727 83 220 0 chr15 33549868 33550000 -67830521 + MER30 DNA MER1_type 70 230 0 828 175 76 0 chr15 33550000 33550171 -67830350 - MER7A DNA MER2_type -164 182 1 1645 193 70 3 chr15 33551255 33551597 -67828924 + MLT1A1 LTR MaLR 1 365 0 1785 186 4 0 chr15 33551807 33552086 -67828435 - AluJo SINE Alu -31 281 2 408 302 101 31 chr15 33552128 33552651 -67827870 - L1ME4a LINE L1 -72 6049 5490 219 69 0 0 chr15 33552707 33552736 -67827785 + (TATAA)n Simple_repeat Simple_repeat 1 29 0 379 207 103 0 chr15 33552764 33552851 -67827670 - MER46A DNA MER2_type -140 96 1 227 235 49 0 chr15 33553813 33553894 -67826627 - L1ME4a LINE L1 -64 6057 5973 192 293 0 0 chr15 33554455 33554496 -67826025 + MIR SINE MIR 6 46 -216 186 314 128 0 chr15 33555322 33555408 -67825113 - MER5A DNA MER1_type -30 159 63 * 274 226 32 0 chr15 33555349 33555411 -67825110 + MER5A DNA MER1_type 78 141 -48 29 47 0 0 chr15 33555423 33555466 -67825055 + AT_rich Low_complexity Low_complexity 1 43 0 745 206 139 50 chr15 33555483 33555784 -67824737 - L1MC5 LINE L1 -122 7839 7512 386 291 138 25 chr15 33556506 33556709 -67823812 - MIR SINE MIR 0 262 37 287 188 0 0 chr15 33556956 33557004 -67823517 - L2 LINE L2 -5 3267 3220 312 27 0 0 chr15 33557755 33557792 -67822729 + (CA)n Simple_repeat Simple_repeat 1 37 0 414 0 0 0 chr15 33557929 33557975 -67822546 + (CA)n Simple_repeat Simple_repeat 2 47 0 361 288 89 107 chr15 33558346 33558850 -67821671 + L1M2 LINE L1 527 1021 -5828 5106 105 33 14 chr15 33558958 33559756 -67820765 - L1PA15 LINE L1 -77 6088 5276 1629 181 0 26 chr15 33559965 33560269 -67820252 + AluJb SINE Alu 1 296 -16 1494 188 9 54 chr15 33560323 33560594 -67819927 + MER2 DNA MER2_type 15 270 -75 2296 108 0 0 chr15 33560594 33560891 -67819630 - AluSg SINE Alu -13 297 1 1494 188 9 54 chr15 33560891 33560954 -67819567 + MER2 DNA MER2_type 270 334 -11 442 251 288 0 chr15 33561337 33561500 -67819021 + MIR SINE MIR 44 253 -9 267 389 38 11 chr15 33561645 33561830 -67818691 - MIR3 SINE MIR -3 205 16 363 321 44 0 chr15 33562734 33562871 -67817650 + L3 LINE CR1 1143 1285 -292 2263 111 0 0 chr15 33563182 33563480 -67817041 + AluSc SINE Alu 1 298 -11 594 242 56 6 chr15 33563482 33563643 -67816878 + MIR SINE MIR 84 252 -10 2634 74 17 6 chr15 33563808 33564159 -67816362 + THE1A LTR MaLR 1 355 0 10796 109 27 0 chr15 33564159 33565698 -67814823 + THE1A-int LTR MaLR 1 1580 0 2704 96 0 0 chr15 33565698 33566053 -67814468 + THE1A LTR MaLR 1 355 0 1787 187 66 62 chr15 33566639 33567142 -67813379 - MLT1D LTR MaLR 0 505 1 388 301 69 12 chr15 33567180 33567348 -67813173 + L1ME LINE L1 5269 5452 -669 25 0 0 0 chr15 33568050 33568075 -67812446 + GC_rich Low_complexity Low_complexity 1 25 0 189 214 0 0 chr15 33571768 33571810 -67808711 + (TA)n Simple_repeat Simple_repeat 1 42 0 238 204 93 0 chr15 33572257 33572311 -67808210 + L2 LINE L2 3213 3271 -1 454 264 8 23 chr15 33573181 33573310 -67807211 + L2 LINE L2 2497 2623 -691 1063 158 28 167 chr15 33573314 33573740 -67806781 + MLT1A1 LTR MaLR 1 432 0 486 264 269 5 chr15 33574299 33574496 -67806025 - MIR SINE MIR 0 262 14 2367 181 113 24 chr15 33574535 33575172 -67805349 + L1ME1 LINE L1 5254 5947 -217 251 246 49 0 chr15 33575183 33575244 -67805277 + L1ME1 LINE L1 6015 6078 -88 382 147 67 0 chr15 33575247 33575322 -67805199 - MLT1A2 LTR MaLR 0 374 295 893 208 43 10 chr15 33576400 33576607 -67803914 + MER58 DNA MER1_type 1 214 -2206 293 329 54 30 chr15 33577047 33577214 -67803307 + MIR3 SINE MIR 38 208 0 236 89 0 22 chr15 33578921 33578966 -67801555 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 509 101 0 0 chr15 33579427 33579496 -67801025 + Alu SINE Alu 1 69 -240 26 30 0 0 chr15 33580050 33580083 -67800438 + AT_rich Low_complexity Low_complexity 1 33 0 2184 107 13 10 chr15 33581436 33581744 -67798777 + AluSq SINE Alu 1 309 -4 617 259 59 79 chr15 33581776 33582081 -67798440 - L2 LINE L2 -1 3312 3014 1338 220 40 38 chr15 33583654 33584027 -67796494 - MLT1A2 LTR MaLR 0 374 1 255 271 83 14 chr15 33584351 33584495 -67796026 - L1M4 LINE L1 -2015 4131 3978 5730 215 78 60 chr15 33584569 33585576 -67794945 - L1MD2 LINE L1 -2 6357 5370 1915 112 0 0 chr15 33585576 33585826 -67794695 - AluSx SINE Alu -62 250 1 5730 215 78 60 chr15 33585826 33586501 -67794020 - L1MD2 LINE L1 -989 5370 4709 351 0 0 0 chr15 33586501 33586540 -67793981 + (TG)n Simple_repeat Simple_repeat 2 40 0 2192 85 3 3 chr15 33586543 33586826 -67793695 - AluSq SINE Alu -30 283 1 5730 215 78 60 chr15 33586826 33588404 -67792117 - L1MD2 LINE L1 -1651 4708 3012 30 45 0 0 chr15 33588437 33588481 -67792040 + AT_rich Low_complexity Low_complexity 1 44 0 233 314 45 12 chr15 33589041 33589283 -67791238 - L1M4 LINE L1 -2659 3487 3238 1570 231 65 44 chr15 33589306 33589848 -67790673 - L1MC4 LINE L1 -38 8004 7452 307 264 88 0 chr15 33589846 33589937 -67790584 + L1MC4 LINE L1 6879 6977 -1065 * 295 54 0 71 chr15 33589994 33590050 -67790471 + (TTATA)n Simple_repeat Simple_repeat 4 55 0 350 309 88 30 chr15 33590139 33590698 -67789823 - L1M4 LINE L1 -3038 3108 2518 255 226 19 0 chr15 33591210 33591263 -67789258 + CT-rich Low_complexity Low_complexity 3 56 0 23 33 0 0 chr15 33591571 33591601 -67788920 + AT_rich Low_complexity Low_complexity 1 30 0 299 267 80 0 chr15 33592243 33592318 -67788203 - MIR SINE MIR -7 255 175 21 57 0 0 chr15 33592737 33592772 -67787749 + AT_rich Low_complexity Low_complexity 1 35 0 207 0 0 0 chr15 33593134 33593157 -67787364 + (T)n Simple_repeat Simple_repeat 1 23 0 2372 145 45 37 chr15 33594108 33594570 -67785951 - L1PA16 LINE L1 -4 6162 5697 21 0 0 0 chr15 33594758 33594779 -67785742 + AT_rich Low_complexity Low_complexity 1 21 0 2145 110 7 0 chr15 33595050 33595342 -67785179 - AluSq SINE Alu -18 295 2 1608 213 104 8 chr15 33595502 33595896 -67784625 + MER63B DNA MER1_type 1 432 -4 260 229 0 0 chr15 33596054 33596102 -67784419 - L2 LINE L2 -495 2819 2772 772 264 59 57 chr15 33596564 33596988 -67783533 + L1MC4 LINE L1 7618 8042 0 261 363 25 19 chr15 33597014 33597174 -67783347 - MIR SINE MIR -37 225 65 2108 120 0 3 chr15 33597253 33597560 -67782961 - AluSx SINE Alu 0 306 1 603 261 33 13 chr15 33599185 33599338 -67781183 + MER5B DNA MER1_type 1 156 -22 394 261 0 58 chr15 33599539 33599677 -67780844 - MER5B DNA MER1_type -48 130 1 407 138 0 0 chr15 33600856 33600914 -67779607 + MER46B DNA MER2_type 1 58 -303 741 145 40 0 chr15 33600914 33601038 -67779483 - FLAM_C SINE Alu -14 129 1 1554 147 89 7 chr15 33601038 33601330 -67779191 + MER46B DNA MER2_type 45 235 -1 683 203 99 33 chr15 33601369 33601551 -67778970 - MLT2C1 LTR ERVL -61 336 143 * 1411 228 71 16 chr15 33601529 33601840 -67778681 + MLT1F LTR MaLR 188 515 -27 370 232 20 71 chr15 33601862 33601961 -67778560 + MLT1F1-int LTR MaLR 10 103 -1268 799 290 25 13 chr15 33602023 33602337 -67778184 + MLT1F1-int LTR MaLR 292 609 -762 240 303 157 0 chr15 33602556 33602645 -67777876 + MLT1F1-int LTR MaLR 755 857 -514 353 279 21 129 chr15 33602769 33603009 -67777512 + MLT1F1-int LTR MaLR 973 1186 -185 233 244 23 23 chr15 33603101 33603187 -67777334 + MLT1F1-int LTR MaLR 1629 1714 -21 2425 227 35 5 chr15 33603212 33603763 -67776758 + MLT1F1 LTR MaLR 1 567 0 185 237 85 17 chr15 33604231 33604290 -67776231 - L2 LINE L2 0 3313 3251 1759 145 24 20 chr15 33604626 33604922 -67775599 - AluJb SINE Alu -13 299 3 247 250 0 0 chr15 33606331 33606379 -67774142 - MIR SINE MIR -12 250 203 407 218 73 8 chr15 33606464 33606588 -67773933 - L1ME4a LINE L1 -260 5861 5730 287 352 104 11 chr15 33606974 33607156 -67773365 + MIR3 SINE MIR 1 199 -9 1491 176 36 26 chr15 33607368 33607675 -67772846 - AluJo SINE Alu -2 310 1 1300 239 85 35 chr15 33608093 33608219 -67772302 + Charlie4a DNA MER1_type 29 147 -1814 1386 175 193 23 chr15 33608219 33608618 -67771903 - MLT1C LTR MaLR 0 467 1 1300 239 85 35 chr15 33608618 33608948 -67771573 + Charlie4a DNA MER1_type 147 508 0 330 269 101 8 chr15 33608961 33609080 -67771441 + HAL1 LINE L1 1137 1266 -1241 316 309 39 28 chr15 33609113 33609291 -67771230 + L1 LINE L1 3747 3926 -2220 755 74 0 16 chr15 33609691 33609812 -67770709 - AluY SINE Alu -2 309 191 217 333 132 37 chr15 33611270 33611726 -67768795 - L2 LINE L2 -825 2489 1991 1359 107 56 5 chr15 33611847 33612063 -67768458 + MER30 DNA MER1_type 4 230 0 478 221 76 23 chr15 33612277 33612408 -67768113 - MIR SINE MIR -73 189 52 21 36 0 0 chr15 33613216 33613244 -67767277 + AT_rich Low_complexity Low_complexity 1 28 0 289 292 35 18 chr15 33613272 33613385 -67767136 + MIR SINE MIR 57 171 -91 21 0 0 0 chr15 33613751 33613772 -67766749 + AT_rich Low_complexity Low_complexity 1 21 0 1866 140 3 7 chr15 33614487 33614806 -67765715 + AluSx SINE Alu 1 318 0 363 297 29 40 chr15 33615429 33615604 -67764917 - L1ME4a LINE L1 -371 5750 5578 414 281 62 41 chr15 33615758 33615904 -67764617 - MIR SINE MIR -40 222 74 261 207 52 0 chr15 33615936 33615994 -67764527 + MER112 DNA MER1_type 1 61 -199 2250 78 7 13 chr15 33617063 33617371 -67763150 - AluY SINE Alu -5 306 1 1480 169 14 34 chr15 33617380 33617676 -67762845 - AluJo SINE Alu -22 290 1 672 188 144 33 chr15 33617832 33618013 -67762508 + MER3 DNA MER1_type 8 208 -1 268 203 0 51 chr15 33617969 33618028 -67762493 - MER3 DNA MER1_type -120 89 34 * 2248 100 7 3 chr15 33618028 33618337 -67762184 - AluSx SINE Alu -2 310 1 267 254 75 0 chr15 33618468 33618535 -67761986 - MER113 DNA MER1_type? -5 516 445 1230 155 170 17 chr15 33618535 33618872 -67761649 - MSTA LTR MaLR 0 428 1 21 36 0 0 chr15 33619157 33619185 -67761336 + AT_rich Low_complexity Low_complexity 1 28 0 212 222 0 0 chr15 33619606 33619642 -67760879 - MIR SINE MIR -4 258 223 186 324 118 10 chr15 33619654 33619756 -67760765 - L2 LINE L2 -12 3260 3148 5212 115 34 5 chr15 33619888 33620407 -67760114 - L1PA16 LINE L1 -9 6157 5655 2167 113 0 3 chr15 33620407 33620700 -67759821 - AluSx SINE Alu -20 292 1 5212 115 34 5 chr15 33620700 33621337 -67759184 - L1PA16 LINE L1 -511 5655 4972 368 186 3 0 chr15 33621337 33621411 -67759110 + L1PA16 LINE L1 4917 4992 -1154 342 0 0 0 chr15 33621651 33621689 -67758832 + (TA)n Simple_repeat Simple_repeat 2 39 0 3469 199 167 25 chr15 33622607 33623615 -67756906 - L1MC4a LINE L1 0 7808 6658 2016 127 0 0 chr15 33623642 33623926 -67756595 - AluSg SINE Alu -26 284 1 256 356 74 7 chr15 33623929 33624078 -67756443 - MIR SINE MIR -103 159 1 22 70 0 0 chr15 33624156 33624199 -67756322 + AT_rich Low_complexity Low_complexity 1 43 0 218 326 0 0 chr15 33624242 33624291 -67756230 - L2 LINE L2 -15 3257 3209 21 0 0 0 chr15 33624457 33624478 -67756043 + AT_rich Low_complexity Low_complexity 1 21 0 332 266 154 14 chr15 33624599 33624742 -67755779 - MIR SINE MIR -11 251 89 368 291 61 80 chr15 33625202 33625404 -67755117 + L3 LINE CR1 1366 1565 -12 1579 166 20 36 chr15 33625404 33625706 -67754815 - AluJo SINE Alu -15 297 1 1956 130 14 0 chr15 33626202 33626328 -67754193 + AluSx SINE Alu 1 124 -188 291 54 0 0 chr15 33626328 33626365 -67754156 + (CA)n Simple_repeat Simple_repeat 2 38 0 1956 130 14 0 chr15 33626365 33626531 -67753990 + AluSx SINE Alu 124 297 -15 1598 133 49 78 chr15 33627022 33627407 -67753114 - THE1C LTR MaLR 0 375 2 432 259 141 7 chr15 33627693 33627828 -67752693 + MIR SINE MIR 36 188 -74 241 309 28 28 chr15 33628008 33628186 -67752335 - L1ME4a LINE L1 -69 6052 5875 277 321 43 38 chr15 33628234 33628418 -67752103 - L1ME4a LINE L1 -2039 5769 5585 267 273 77 87 chr15 33628825 33629008 -67751513 - MER5A DNA MER1_type -2 187 7 24 0 0 0 chr15 33629054 33629078 -67751443 + AT_rich Low_complexity Low_complexity 1 24 0 786 289 118 16 chr15 33629200 33629758 -67750763 - L2 LINE L2 -1 3312 2689 1359 169 92 32 chr15 33629974 33630258 -67750263 + AluJo SINE Alu 4 304 -8 306 301 174 18 chr15 33630950 33631269 -67749252 - L1MC/D LINE L1 -609 5575 5366 299 263 18 53 chr15 33631508 33631622 -67748899 - L2 LINE L2 -655 2659 2550 22 35 0 0 chr15 33631800 33631829 -67748692 + AT_rich Low_complexity Low_complexity 1 29 0 406 196 206 37 chr15 33631836 33631943 -67748578 + FLAM_A SINE Alu 3 127 -6 * 449 143 185 0 chr15 33631938 33632057 -67748464 + Charlie2 DNA MER1_type 2130 2270 -592 28 0 0 0 chr15 33632057 33632085 -67748436 + AT_rich Low_complexity Low_complexity 1 28 0 390 270 87 10 chr15 33632230 33632426 -67748095 - L1ME4a LINE L1 -205 6310 6100 * 898 112 28 0 chr15 33632425 33632554 -67747967 + L1PB1 LINE L1 5645 5780 -371 345 47 0 0 chr15 33632554 33632597 -67747924 + (TG)n Simple_repeat Simple_repeat 2 44 0 898 112 28 0 chr15 33632597 33632610 -67747911 + L1PB1 LINE L1 5780 5791 -360 191 74 19 56 chr15 33632610 33632664 -67747857 + (TTATA)n Simple_repeat Simple_repeat 2 53 0 2442 69 25 30 chr15 33632754 33633116 -67747405 + L1PB1 LINE L1 5791 6150 -1 253 231 127 37 chr15 33633135 33633269 -67747252 - L1ME4a LINE L1 -407 6108 5963 28 0 0 0 chr15 33633900 33633928 -67746593 + AT_rich Low_complexity Low_complexity 1 28 0 1972 111 3 37 chr15 33634111 33634409 -67746112 + AluSq SINE Alu 20 307 -6 26 0 0 0 chr15 33635294 33635320 -67745201 + AT_rich Low_complexity Low_complexity 1 26 0 1568 239 134 75 chr15 33636310 33636705 -67743816 - L1ME4a LINE L1 -2055 4485 4115 2112 104 13 10 chr15 33636705 33637003 -67743518 - AluSg SINE Alu -11 299 1 1568 239 134 75 chr15 33637003 33637668 -67742853 - L1ME4a LINE L1 -2425 4115 3362 377 255 167 5 chr15 33637809 33638001 -67742520 - L1ME4a LINE L1 -3265 3275 3053 626 257 151 32 chr15 33638007 33638456 -67742065 - L1MEc LINE L1 -3716 2848 2365 308 183 95 66 chr15 33638711 33638848 -67741673 - L1M1 LINE L1 -4601 2964 2824 305 245 95 34 chr15 33638883 33639030 -67741491 - L1MEc LINE L1 -4823 1717 1562 361 174 14 14 chr15 33639952 33640021 -67740500 - MIR SINE MIR -22 240 172 28 48 0 0 chr15 33640080 33640122 -67740399 + AT_rich Low_complexity Low_complexity 1 42 0 932 238 14 14 chr15 33640723 33640933 -67739588 + MIR SINE MIR 7 216 -46 1551 225 73 37 chr15 33641672 33642126 -67738395 - LTR40a LTR ERVL -41 478 9 1358 199 88 0 chr15 33642229 33642501 -67738020 + AluJb SINE Alu 1 296 -16 571 282 167 31 chr15 33643137 33643935 -67736586 - L1M4 LINE L1 -869 5277 4372 264 30 0 0 chr15 33644589 33644622 -67735899 + (TG)n Simple_repeat Simple_repeat 2 34 0 280 235 25 67 chr15 33644847 33644966 -67735555 + L1MC5 LINE L1 7813 7926 -35 770 193 36 12 chr15 33645063 33645380 -67735141 - L1MB7 LINE L1 -16 6168 5719 1788 153 44 82 chr15 33646270 33646675 -67733846 - MLT1B LTR MaLR 0 390 1 673 139 49 28 chr15 33646679 33646823 -67733698 - MLT1B-int LTR MaLR -4 1367 1221 1295 241 58 6 chr15 33646823 33647151 -67733370 - MLT2D LTR ERVL -69 345 1 197 33 33 0 chr15 33649197 33649227 -67731294 + (TTG)n Simple_repeat Simple_repeat 2 32 0 2357 80 3 3 chr15 33651127 33651428 -67729093 - AluSq SINE Alu -12 301 1 251 248 181 0 chr15 33653473 33653578 -67726943 - MIR SINE MIR -58 204 81 1617 185 10 7 chr15 33654172 33654475 -67726046 - AluJo SINE Alu -8 304 1 2036 146 3 0 chr15 33855748 33856036 -67524485 + AluSx SINE Alu 1 289 -23 25 0 0 0 chr15 33856036 33856061 -67524460 + AT_rich Low_complexity Low_complexity 1 25 0 2232 85 0 7 chr15 33856097 33856380 -67524141 + AluSg SINE Alu 23 303 -7 750 268 79 45 chr15 33856614 33856968 -67523553 - L3 LINE CR1 -58 1519 1154 1819 158 3 31 chr15 33857044 33857361 -67523160 + AluJb SINE Alu 5 312 0 945 225 60 41 chr15 33857424 33857737 -67522784 + L1ME2 LINE L1 5837 6154 -10 1979 181 12 33 chr15 33858397 33858816 -67521705 + L1MC3 LINE L1 7355 7764 -21 743 216 36 0 chr15 33859088 33859255 -67521266 - L1ME LINE L1 -647 5517 5345 614 216 0 9 chr15 33859255 33859371 -67521150 - HERV16 LTR ERVL -3186 1810 1696 321 135 0 0 chr15 33859385 33859437 -67521084 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 509 202 124 0 chr15 33859437 33859566 -67520955 - AluJb SINE Alu -2 310 166 213 196 107 0 chr15 33859666 33859722 -67520799 + MIR SINE MIR 122 183 -79 788 297 84 53 chr15 33861095 33861681 -67518840 + MLT1L LTR MaLR 8 611 -4 976 254 69 51 chr15 33861814 33862306 -67518215 + MLT1H1 LTR MaLR 1 544 -5 1805 167 17 3 chr15 33862584 33862877 -67517644 + AluJb SINE Alu 1 297 -15 278 359 124 4 chr15 33865619 33865853 -67514668 + HAL1 LINE L1 2238 2499 -8 298 294 76 8 chr15 33866358 33866477 -67514044 - MIR3 SINE MIR -9 199 73 243 345 17 25 chr15 33868661 33868780 -67511741 + MIR SINE MIR 34 151 -111 633 133 0 10 chr15 33870260 33870358 -67510163 - AluS SINE Alu -215 98 2 827 148 9 124 chr15 33872051 33872261 -67508260 - MER5A DNA MER1_type -3 186 1 267 103 0 0 chr15 33873128 33873167 -67507354 + (CA)n Simple_repeat Simple_repeat 2 40 0 584 238 116 11 chr15 33873988 33874177 -67506344 - MER3 DNA MER1_type 0 209 1 1639 234 128 30 chr15 33875231 33875769 -67504752 + MLT1E2 LTR MaLR 21 611 -15 383 230 118 7 chr15 33876128 33876263 -67504258 - MIR SINE MIR -66 196 47 1360 203 77 59 chr15 33878573 33878962 -67501559 - MSTD LTR MaLR 0 396 1 668 218 38 28 chr15 33879117 33879328 -67501193 + L1ME3A LINE L1 4541 4753 -1393 1109 264 100 0 chr15 33879337 33879678 -67500843 + L1ME3A LINE L1 5568 5942 -228 1674 176 3 21 chr15 33879683 33879967 -67500554 - AluJo SINE Alu -31 281 3 466 227 36 9 chr15 33879990 33880100 -67500421 + MLT1H LTR MaLR 1 113 -436 829 166 41 6 chr15 33880101 33880270 -67500251 - MER96B DNA MER1_type? 0 417 243 235 253 51 25 chr15 33880359 33880438 -67500083 + MLT1H LTR MaLR 202 282 -267 3510 92 9 0 chr15 33880476 33880930 -67499591 + LTR22A LTR ERVK 1 458 0 234 204 0 0 chr15 33880996 33881040 -67499481 + MLT1H LTR MaLR 506 549 0 642 234 136 0 chr15 33881040 33881224 -67499297 + L1ME3A LINE L1 5948 6156 -14 2264 94 14 0 chr15 33881641 33881938 -67498583 - AluSx SINE Alu -11 301 1 648 269 34 10 chr15 33882419 33882627 -67497894 - MIR SINE MIR -35 227 15 180 0 0 0 chr15 33883003 33883023 -67497498 + (T)n Simple_repeat Simple_repeat 1 20 0 291 284 75 15 chr15 33884291 33884425 -67496096 + MIR SINE MIR 28 169 -93 3332 139 89 12 chr15 33884430 33885028 -67495493 - MER39B LTR ERV1 -4 649 6 260 250 36 24 chr15 33885044 33885128 -67495393 + MIR SINE MIR 178 262 0 362 301 58 26 chr15 33886347 33886503 -67494018 - L2 LINE L2 -33 3239 3079 388 306 64 50 chr15 33886559 33886778 -67493743 + MLT1I LTR MaLR 68 289 -120 330 224 11 32 chr15 33887407 33887528 -67492993 - L1MC4 LINE L1 0 8042 7873 2761 80 0 25 chr15 33887616 33887980 -67492541 + THE1A LTR MaLR 1 355 0 427 247 153 80 chr15 33888009 33888361 -67492160 + L1MC/D LINE L1 5295 5672 -449 2393 66 3 0 chr15 33888394 33888871 -67491650 + AluY SINE Alu 1 478 0 183 42 0 0 chr15 33888894 33888918 -67491603 + (A)n Simple_repeat Simple_repeat 1 24 0 702 248 86 14 chr15 33888985 33889207 -67491314 - MIR SINE MIR -21 241 4 2244 114 0 16 chr15 33889395 33889702 -67490819 + AluSg SINE Alu 1 302 -8 587 241 26 0 chr15 33889830 33889946 -67490575 + LTR16A LTR ERVL 326 444 -6 3611 282 96 48 chr15 33889962 33890859 -67489662 + HERV16 LTR ERVL 5 1004 -3992 5894 125 14 13 chr15 33890859 33891761 -67488760 - MER4D LTR ERV1 0 903 1 3611 282 96 48 chr15 33891761 33892367 -67488154 + HERV16 LTR ERVL 1004 1580 -3416 797 181 0 0 chr15 33892422 33892555 -67487966 + FLAM_C SINE Alu 1 133 0 405 0 0 0 chr15 33893731 33893776 -67486745 + (CTG)n Simple_repeat Simple_repeat 1 45 0 915 270 70 39 chr15 33894761 33895176 -67485345 + L2 LINE L2 2863 3290 -23 885 119 56 25 chr15 33895674 33895834 -67484687 - L1MA9 LINE L1 -38 6274 6110 398 235 0 12 chr15 33895834 33895915 -67484606 + Tigger5 DNA MER2_type 1 80 -2243 1896 160 99 8 chr15 33895955 33896256 -67484265 - L1MA9 LINE L1 -200 6112 5769 204 40 0 0 chr15 33896256 33896281 -67484240 + (CA)n Simple_repeat Simple_repeat 1 25 0 1896 160 99 8 chr15 33896281 33896354 -67484167 - L1MA9 LINE L1 -543 5769 5704 213 211 0 0 chr15 33896445 33896483 -67484038 + A-rich Low_complexity Low_complexity 5 42 0 360 198 33 11 chr15 33896839 33896930 -67483591 + MER5B DNA MER1_type 72 164 -14 653 271 49 31 chr15 33897095 33897190 -67483331 + MLT1L LTR MaLR 387 479 -136 2047 106 0 46 chr15 33897190 33897492 -67483029 + AluSx SINE Alu 15 302 -10 653 271 49 31 chr15 33897492 33897621 -67482900 + MLT1L LTR MaLR 479 615 0 3735 140 8 81 chr15 33899939 33900669 -67479852 - LTR8 LTR ERV1 -14 677 1 340 302 32 0 chr15 33900951 33901077 -67479444 - MIR SINE MIR -43 219 90 307 238 21 105 chr15 33901494 33901637 -67478884 - MIR SINE MIR -101 161 31 359 224 66 113 chr15 33901789 33901996 -67478525 - MER34 LTR ERV1 0 542 421 353 94 0 0 chr15 33902223 33902276 -67478245 - MADE1 DNA Mariner 0 80 28 2337 117 0 0 chr15 33903837 33904144 -67476377 + AluSx SINE Alu 3 309 -3 2325 100 0 0 chr15 33904281 33904572 -67475949 + AluSq SINE Alu 1 291 -22 1269 179 53 17 chr15 33904600 33904902 -67475619 - MER33 DNA MER1_type -11 313 1 1014 234 58 92 chr15 33905149 33905564 -67474957 - MLT1I LTR MaLR -3 406 6 259 315 65 28 chr15 33906100 33906208 -67474313 - MIR SINE MIR -62 146 35 1698 170 36 88 chr15 33906409 33906511 -67474010 + MLT1B LTR MaLR 1 107 -283 2177 112 10 0 chr15 33906511 33906805 -67473716 + AluSq SINE Alu 1 297 -16 1698 170 36 88 chr15 33906805 33907113 -67473408 + MLT1B LTR MaLR 107 390 0 204 40 0 0 chr15 33907460 33907485 -67473036 + (CA)n Simple_repeat Simple_repeat 1 25 0 523 212 218 21 chr15 33907521 33907714 -67472807 - MIR SINE MIR 0 262 32 377 274 0 11 chr15 33907864 33907959 -67472562 + L2 LINE L2 3214 3307 -6 21 0 0 0 chr15 33908664 33908685 -67471836 + AT_rich Low_complexity Low_complexity 1 21 0 1960 123 10 35 chr15 33908703 33909013 -67471508 - AluJo SINE Alu -10 302 1 1203 257 85 40 chr15 33909057 33909306 -67471215 - Charlie7 DNA MER1_type -1890 722 486 1751 148 9 90 chr15 33909306 33909638 -67470883 - AluJo SINE Alu -7 305 1 1203 257 85 40 chr15 33909638 33909894 -67470627 - Charlie7 DNA MER1_type -2126 486 194 716 143 8 0 chr15 33910767 33910893 -67469628 + CT-rich Low_complexity Low_complexity 1 127 0 1997 120 48 0 chr15 33910893 33911184 -67469337 - AluSx SINE Alu -7 305 1 2013 142 3 22 chr15 33911758 33912076 -67468445 + AluJb SINE Alu 1 312 0 212 299 140 9 chr15 33912817 33912924 -67467597 - L2 LINE L2 -5 3267 3147 2230 117 0 3 chr15 33913253 33913552 -67466969 - AluSq SINE Alu -15 298 1 189 0 0 0 chr15 33914170 33914191 -67466330 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 554 253 93 0 chr15 33914402 33914564 -67465957 - MER5B DNA MER1_type 0 178 2 825 216 0 29 chr15 33915251 33915422 -67465099 - FRAM SINE Alu 0 166 1 208 257 40 27 chr15 33916169 33916243 -67464278 + MIR SINE MIR 170 244 -18 209 250 16 31 chr15 33916491 33916555 -67463966 - L2 LINE L2 -191 3081 3019 1895 188 147 28 chr15 33916853 33917322 -67463199 + MLT1F LTR MaLR 9 533 -9 546 235 117 43 chr15 33917332 33917694 -67462827 + MLT1H LTR MaLR 31 586 -9 234 274 88 83 chr15 33917888 33918092 -67462429 - L2 LINE L2 -635 2679 2475 405 263 68 8 chr15 33919720 33919853 -67460668 - MIR3 SINE MIR -41 167 27 4700 154 21 20 chr15 33920814 33921319 -67459202 - L1MA8 LINE L1 -2 6289 5781 1594 121 27 5 chr15 33921319 33921543 -67458978 + MER30 DNA MER1_type 1 229 -1 4700 154 21 20 chr15 33921543 33921877 -67458644 - L1MA8 LINE L1 -510 5781 5449 1366 257 56 9 chr15 33921982 33922324 -67458197 - ERVL-F LTR ERVL -3629 2135 1778 763 318 86 66 chr15 33922322 33922746 -67457775 - ERVL-F LTR ERVL -4734 1030 616 * 2385 81 0 7 chr15 33922746 33923056 -67457465 - AluY SINE Alu -3 308 1 1359 218 21 14 chr15 33923066 33923351 -67457170 - AluJo SINE Alu -25 287 1 763 318 86 66 chr15 33923351 33923614 -67456907 - ERVL-F LTR ERVL -5156 608 318 491 127 9 100 chr15 33923638 33923748 -67456773 - MLT2F LTR ERVL 0 663 564 784 288 45 36 chr15 33923833 33924191 -67456330 + L1MEd LINE L1 423 783 -5747 189 0 0 0 chr15 33924233 33924254 -67456267 + (A)n Simple_repeat Simple_repeat 1 21 0 316 326 28 35 chr15 33924257 33924398 -67456123 + L1MEd LINE L1 813 952 -5578 555 306 24 45 chr15 33924745 33924905 -67455616 + L1MEd LINE L1 2454 2616 -3924 2181 109 19 22 chr15 33924905 33925218 -67455303 + AluSx SINE Alu 1 312 0 555 306 24 45 chr15 33925218 33925743 -67454778 + L1MEd LINE L1 2616 3123 -3417 385 283 0 11 chr15 33925744 33925836 -67454685 - MER5B DNA MER1_type -87 91 1 952 114 0 0 chr15 33926148 33926271 -67454250 + FLAM_C SINE Alu 1 123 -20 225 235 0 20 chr15 33927006 33927057 -67453464 + L2 LINE L2 3136 3185 -87 807 254 142 44 chr15 33927078 33927444 -67453077 + MLT1I LTR MaLR 7 408 -1 314 217 33 0 chr15 33927444 33927504 -67453017 + L2 LINE L2 3202 3263 -9 188 279 0 0 chr15 33927552 33927595 -67452926 + L2 LINE L2 3222 3264 -8 1643 182 0 32 chr15 33927618 33927926 -67452595 - AluJo SINE Alu -14 298 1 457 338 82 24 chr15 33928915 33929200 -67451321 + L2 LINE L2 2768 3066 -247 2052 235 67 23 chr15 33929541 33930141 -67450380 + L1MC4a LINE L1 5195 5315 -831 2243 117 85 20 chr15 33930141 33930483 -67450038 - THE1B LTR MaLR 0 364 1 2052 235 67 23 chr15 33930483 33930532 -67449989 + L1MC4a LINE L1 5315 5360 -786 289 291 103 0 chr15 33931149 33931266 -67449255 - LTR16C LTR ERVL -87 404 276 430 306 28 22 chr15 33931315 33931495 -67449026 - L1MC4a LINE L1 -1880 5928 5748 494 298 80 31 chr15 33933045 33933379 -67447142 - L1MC4a LINE L1 -688 5466 5150 219 114 0 0 chr15 33933379 33933414 -67447107 + (TA)n Simple_repeat Simple_repeat 1 35 0 494 298 80 31 chr15 33933414 33933951 -67446570 - L1MC4a LINE L1 -1004 5150 4567 21 0 0 0 chr15 33933999 33934020 -67446501 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 33934101 33934122 -67446399 + AT_rich Low_complexity Low_complexity 1 21 0 783 140 9 0 chr15 33934949 33935063 -67445458 + AluJb SINE Alu 2 116 -196 1139 137 55 6 chr15 33935139 33935322 -67445199 + AluJb SINE Alu 112 303 -9 1013 116 7 0 chr15 33935363 33935501 -67445020 - MER20 DNA MER1_type -48 171 33 1165 216 14 5 chr15 33936990 33937212 -67443309 - MER58A DNA MER1_type 0 224 1 327 256 25 106 chr15 33937917 33938116 -67442405 - L2 LINE L2 -119 3194 3012 384 263 59 63 chr15 33938224 33938558 -67441963 + L1ME4a LINE L1 5784 6110 -11 736 160 59 53 chr15 33938871 33939058 -67441463 - MER53 DNA DNA -1 188 1 519 296 53 6 chr15 33939395 33939564 -67440957 + MER5B DNA MER1_type 1 177 -1 546 196 20 0 chr15 33939672 33939774 -67440747 - MER5A DNA MER1_type -77 112 9 398 200 132 93 chr15 33940299 33940512 -67440009 + MIR SINE MIR 28 262 0 282 351 108 5 chr15 33941487 33941672 -67438849 - MIR SINE MIR 0 262 59 4056 29 0 4 chr15 33941771 33942218 -67438303 + L1PA5 LINE L1 5703 6149 -5 207 0 0 0 chr15 33942218 33942241 -67438280 + (TA)n Simple_repeat Simple_repeat 1 23 0 584 242 39 0 chr15 33942528 33942681 -67437840 + MER103 DNA DNA 7 165 -1 194 213 16 82 chr15 33942786 33942847 -67437674 + MER5A DNA MER1_type 9 65 -124 340 212 40 50 chr15 33942884 33942983 -67437538 - MLT1G LTR MaLR -290 300 203 250 48 71 0 chr15 33943002 33943044 -67437477 + MER5A DNA MER1_type 68 112 -77 777 279 205 18 chr15 33943163 33943650 -67436871 - MLT1H1 LTR MaLR -8 547 1 754 298 57 59 chr15 33943867 33944507 -67436014 - L2 LINE L2 -11 3302 2668 2133 121 0 7 chr15 33944507 33944804 -67435717 + AluSx SINE Alu 1 295 -17 754 298 57 59 chr15 33944804 33944923 -67435598 - L2 LINE L2 -645 2668 2550 257 284 15 0 chr15 33946363 33946430 -67434091 + GA-rich Low_complexity Low_complexity 6 73 0 1368 141 74 84 chr15 33946558 33946856 -67433665 + AluJo SINE Alu 1 295 -17 2543 11 0 0 chr15 33947750 33948027 -67432494 + AluYa5 SINE Alu 29 305 -6 480 291 116 10 chr15 33948300 33948499 -67432022 + MIR SINE MIR 36 255 -7 235 301 41 0 chr15 33948716 33948789 -67431732 - MIR3 SINE MIR -23 185 110 523 287 10 41 chr15 33949681 33949876 -67430645 - LTR16B LTR ERVL 0 464 276 900 114 8 0 chr15 33950029 33950160 -67430361 - AluSp/q SINE Alu -12 301 170 214 330 51 17 chr15 33950455 33950573 -67429948 + L2 LINE L2 3147 3268 -4 2199 113 36 0 chr15 33950746 33951047 -67429474 - AluSx SINE Alu 0 312 1 236 325 92 8 chr15 33951087 33951207 -67429314 - LTR67 LTR ERVL -76 481 352 194 0 0 37 chr15 33951764 33951791 -67428730 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2220 74 0 4 chr15 33952634 33952905 -67427616 + AluY SINE Alu 3 272 -39 1062 185 39 13 chr15 33952983 33953215 -67427306 - L1MB3 LINE L1 -5 6178 5941 387 257 119 0 chr15 33954065 33954166 -67426355 - L2 LINE L2 0 3313 3201 441 103 0 0 chr15 33956426 33956494 -67424027 + (CA)n Simple_repeat Simple_repeat 2 69 0 512 276 209 24 chr15 33956874 33957084 -67423437 - MIR SINE MIR -1 261 13 373 290 46 0 chr15 33957379 33957510 -67423011 + MIR SINE MIR 125 261 -1 211 268 86 35 chr15 33958273 33958442 -67422079 - MIR3 SINE MIR -70 192 15 493 273 20 0 chr15 33958580 33958730 -67421791 - MER103 DNA DNA -13 153 1 2286 90 0 27 chr15 33959255 33959556 -67420965 + AluSg SINE Alu 1 293 -17 253 179 0 0 chr15 33959898 33959937 -67420584 + MER34 LTR ERV1 7 45 -497 1982 211 57 13 chr15 33959940 33960396 -67420125 + MER39 LTR ERV1 232 707 0 27 0 0 0 chr15 33961217 33961244 -67419277 + AT_rich Low_complexity Low_complexity 1 27 0 282 241 38 0 chr15 33961261 33961340 -67419181 - MIR SINE MIR -77 185 104 224 220 0 11 chr15 33961466 33961494 -67419027 + (CA)n Simple_repeat Simple_repeat 1 28 -62 1857 160 95 45 chr15 33961494 33961937 -67418584 - MER31B LTR ERV1 -1 465 1 224 220 0 11 chr15 33961937 33961999 -67418522 + (CA)n Simple_repeat Simple_repeat 28 90 0 1375 200 27 37 chr15 33962055 33962355 -67418166 + AluJo SINE Alu 1 297 -15 2061 136 57 0 chr15 33962510 33962842 -67417679 - MER34B LTR ERV1 0 565 215 404 241 173 0 chr15 33962842 33962975 -67417546 - MER57A LTR ERV1 -53 350 195 1226 189 46 18 chr15 33963001 33963331 -67417190 - MER34B LTR ERV1 -281 222 1 892 224 57 99 chr15 33963738 33964056 -67416465 + LTR37A LTR ERV1 19 320 -106 2461 55 7 0 chr15 33964056 33964346 -67416175 - AluY SINE Alu -19 292 1 892 224 57 99 chr15 33964346 33964410 -67416111 + LTR37A LTR ERV1 320 385 -41 1134 187 66 116 chr15 33964453 33964833 -67415688 - MER39 LTR ERV1 -41 666 306 243 130 0 22 chr15 33964964 33965010 -67415511 + LTR37A LTR ERV1 382 426 0 1339 160 112 75 chr15 33965730 33966061 -67414460 + MER2 DNA MER2_type 1 343 -1 314 259 12 12 chr15 33966111 33966196 -67414325 + MER5A DNA MER1_type 4 88 -101 285 260 0 13 chr15 33966140 33966217 -67414304 - MER5A DNA MER1_type -22 167 92 * 473 296 15 0 chr15 33966511 33966646 -67413875 + MIR SINE MIR 2 138 -124 2778 121 100 55 chr15 33966652 33967212 -67413309 + MER34C LTR ERV1 1 585 0 218 292 22 34 chr15 33967274 33967363 -67413158 + MIR SINE MIR 175 262 0 2170 112 20 0 chr15 33967404 33967707 -67412814 + AluSq SINE Alu 1 309 -4 1708 171 42 0 chr15 33968656 33968943 -67411578 + AluJo SINE Alu 1 299 -13 243 235 30 68 chr15 33968959 33969091 -67411430 + MIR SINE MIR 69 195 -67 682 262 65 65 chr15 33969254 33969621 -67410900 - MLT1L LTR MaLR -248 367 1 202 268 84 0 chr15 33969737 33969808 -67410713 - MIR SINE MIR -49 213 137 5209 31 5 0 chr15 33969817 33970425 -67410096 - L1PA4 LINE L1 -3 6152 5542 5732 32 0 0 chr15 33970426 33971103 -67409418 + L1P LINE L1 2250 2926 -3220 221 298 202 11 chr15 33971204 33971298 -67409223 - MIR SINE MIR -124 138 27 298 244 24 12 chr15 33972850 33972932 -67407589 + MIR SINE MIR 69 151 -57 21 36 0 0 chr15 33972952 33972980 -67407541 + AT_rich Low_complexity Low_complexity 1 28 0 185 211 0 0 chr15 33973528 33973566 -67406955 - MIR3 SINE MIR -49 159 122 426 243 97 83 chr15 33973577 33973759 -67406762 + L1ME4a LINE L1 5590 5779 -342 2075 62 12 4 chr15 33973759 33974015 -67406506 - AluY SINE Alu -4 307 50 426 243 97 83 chr15 33974015 33974120 -67406401 + L1ME4a LINE L1 5779 5881 -240 697 170 0 0 chr15 33974613 33974719 -67405802 - LTR26B LTR ERV1 0 531 426 3084 117 16 43 chr15 33974719 33975337 -67405184 - MER4B LTR ERV1 0 779 1 1216 131 68 1 chr15 33975337 33975550 -67404971 - LTR26B LTR ERV1 -102 429 235 227 300 0 0 chr15 33975564 33975634 -67404887 + (CA)n Simple_repeat Simple_repeat 1 70 0 2427 95 0 3 chr15 33976621 33976927 -67403594 - AluSq SINE Alu -8 305 1 400 275 101 34 chr15 33979823 33980001 -67400520 + MIR SINE MIR 2 191 -71 41636 69 4 3 chr15 33980014 33986150 -67394371 - L1PA5 LINE L1 -6 6148 5 244 157 20 0 chr15 33986617 33986668 -67393853 - L1MC1 LINE L1 -1 6332 6281 1589 172 4 0 chr15 33986701 33986968 -67393553 - L1MC1 LINE L1 -45 6288 6021 362 147 207 164 chr15 33987246 33987421 -67393100 - ORSL DNA AcHobo 0 275 86 1896 165 6 22 chr15 33987421 33987737 -67392784 - AluJb SINE Alu -1 311 1 362 147 207 164 chr15 33987737 33987793 -67392728 - ORSL DNA AcHobo -189 86 34 399 310 105 0 chr15 33989989 33990160 -67390361 - MIR SINE MIR -72 190 2 555 241 47 51 chr15 33990499 33990752 -67389769 - MER112 DNA MER1_type -2 254 3 359 265 10 0 chr15 33990823 33990921 -67389600 + L2 LINE L2 2680 2778 -536 254 265 10 41 chr15 33991719 33991817 -67388704 + L2 LINE L2 3161 3255 -58 310 333 115 11 chr15 33992151 33992421 -67388100 - L2 LINE L2 -463 2851 2554 32857 100 13 53 chr15 33992859 33999254 -67381267 + L1PA7 LINE L1 12 6144 -10 210 247 0 47 chr15 33999719 33999804 -67380717 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 331 282 118 35 chr15 34001117 34001287 -67379234 + MIR SINE MIR 35 218 -44 1088 206 105 23 chr15 34003414 34003720 -67376801 + MER2 DNA MER2_type 14 344 -1 225 330 66 28 chr15 34003913 34004095 -67376426 + MER5A DNA MER1_type 1 189 0 492 164 67 0 chr15 34004537 34004701 -67375820 - L1PA16 LINE L1 -6 6160 5951 405 258 86 105 chr15 34006511 34006638 -67373883 - MIR SINE MIR 0 262 134 2020 142 13 7 chr15 34006638 34006948 -67373573 - AluSx SINE Alu 0 312 1 405 258 86 105 chr15 34006948 34007087 -67373434 - MIR SINE MIR -128 134 1 1853 173 16 3 chr15 34007698 34008005 -67372516 - AluJb SINE Alu -1 311 1 217 375 0 0 chr15 34008470 34008558 -67371963 - MIR3 SINE MIR -28 180 93 416 280 32 32 chr15 34009016 34009141 -67371380 - L2 LINE L2 0 3313 3189 1436 171 106 8 chr15 34009739 34010003 -67370518 - AluJb SINE Alu -12 290 1 863 193 60 0 chr15 34012255 34012421 -67368100 - FRAM SINE Alu -2 174 1 369 0 0 0 chr15 34012428 34012469 -67368052 + (TG)n Simple_repeat Simple_repeat 2 42 0 2024 130 17 0 chr15 34012469 34012770 -67367751 - AluSp SINE Alu -7 306 1 251 269 0 0 chr15 34013060 34013112 -67367409 + LTR30 LTR ERV1 1 52 -670 419 202 44 28 chr15 34013112 34013298 -67367223 + LTR12 LTR ERV1 100 270 -444 290 207 0 69 chr15 34013305 34013392 -67367129 + LTR30 LTR ERV1 544 624 -98 661 117 63 0 chr15 34013392 34013507 -67367014 + LTR12 LTR ERV1 359 582 -132 380 242 84 11 chr15 34013548 34013643 -67366878 - L2 LINE L2 -1 3271 3170 646 267 54 23 chr15 34013892 34014113 -67366408 + MIR SINE MIR 35 262 0 252 262 233 0 chr15 34014761 34014864 -67365657 + MIR SINE MIR 17 143 -65 2210 111 10 0 chr15 34015253 34015560 -67364961 - AluSx SINE Alu -2 310 1 820 307 46 24 chr15 34015597 34016056 -67364465 - L1ME3 LINE L1 -277 5885 5417 409 302 16 0 chr15 34017167 34017296 -67363225 - MER94 DNA DNA -1 133 3 366 314 102 0 chr15 34017337 34017474 -67363047 + L2 LINE L2 3122 3272 0 339 254 123 14 chr15 34017898 34018036 -67362485 - MIR3 SINE MIR -5 203 51 182 197 66 98 chr15 34019861 34019922 -67360599 - MER5A DNA MER1_type 0 189 131 222 213 259 9 chr15 34021257 34021365 -67359156 + L2 LINE L2 3158 3292 -21 3255 104 17 0 chr15 34021531 34022001 -67358520 - L1PA13 LINE L1 -20 6143 5664 2782 184 47 7 chr15 34022173 34022723 -67357798 + L1MB7 LINE L1 5610 6181 -3 2477 53 0 0 chr15 34022750 34023063 -67357458 + AluY SINE Alu 1 313 0 187 348 37 31 chr15 34023869 34024030 -67356491 - L2 LINE L2 -294 2978 2817 399 294 106 51 chr15 34026090 34026345 -67354176 + L2 LINE L2 3000 3268 -45 260 228 0 0 chr15 34026479 34026536 -67353985 - MLT2C1 LTR ERVL -8 389 333 282 145 53 15 chr15 34026541 34026672 -67353849 + (TA)n Simple_repeat Simple_repeat 2 137 0 2493 181 25 58 chr15 34026689 34027176 -67353345 - MLT2B2 LTR ERVL -44 471 1 662 310 270 19 chr15 34027771 34028442 -67352079 + L3 LINE CR1 728 1566 -11 951 303 85 6 chr15 34029605 34029935 -67350586 - LTR33 LTR ERVL -165 356 1 2362 180 0 5 chr15 34030541 34030908 -67349613 - MLT1A1 LTR MaLR 0 365 1 294 163 50 75 chr15 34031061 34031095 -67349426 - MLT1H1 LTR MaLR 0 555 522 1887 184 31 20 chr15 34031095 34031453 -67349068 - MLT1A1 LTR MaLR -3 362 1 294 163 50 75 chr15 34031453 34031498 -67349023 - MLT1H1 LTR MaLR -33 522 478 282 260 10 0 chr15 34031763 34031859 -67348662 + L1MEc LINE L1 1619 1715 -5006 455 298 116 31 chr15 34031899 34032376 -67348145 + L1MEc LINE L1 2400 2936 -3604 6181 143 113 8 chr15 34032376 34033490 -67347031 + Tigger3b DNA MER2_type 1 1231 0 455 298 116 31 chr15 34033490 34033577 -67346944 + L1MEc LINE L1 2936 3014 -3526 232 315 34 62 chr15 34033749 34033895 -67346626 - MLT1I LTR MaLR -169 240 99 563 279 141 46 chr15 34034099 34034711 -67345810 + L1MEc LINE L1 3238 3907 -2633 1921 149 30 0 chr15 34034806 34035101 -67345420 + AluSx SINE Alu 1 304 -8 200 222 0 0 chr15 34035301 34035346 -67345175 + (TA)n Simple_repeat Simple_repeat 2 46 0 2069 95 4 0 chr15 34036151 34036425 -67344096 - AluY SINE Alu -36 275 1 24 0 0 0 chr15 34036425 34036449 -67344072 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr15 34037670 34037698 -67342823 + AT_rich Low_complexity Low_complexity 1 28 0 201 241 98 107 chr15 34037902 34038014 -67342507 - L2 LINE L2 -1 3271 3161 184 281 123 0 chr15 34038706 34038763 -67341758 + L2 LINE L2 3169 3232 -40 181 364 133 7 chr15 34040208 34040359 -67340162 + MIR3 SINE MIR 20 189 -19 528 241 18 0 chr15 34040585 34040697 -67339824 + MER81 DNA DNA 1 114 0 2402 100 7 0 chr15 34040999 34041309 -67339212 - AluSx SINE Alu 0 312 1 382 265 163 34 chr15 34043060 34043207 -67337314 + MIR3 SINE MIR 33 198 -10 2596 140 13 75 chr15 34043956 34044479 -67336042 - L1MC3 LINE L1 0 7785 7295 1034 154 86 45 chr15 34044618 34044838 -67335683 - L1MC3 LINE L1 -501 7284 7056 320 352 162 23 chr15 34045175 34045829 -67334692 + L2 LINE L2 2000 2744 -570 645 305 47 0 chr15 34046534 34046747 -67333774 - MIR SINE MIR -32 230 8 2818 6 0 28 chr15 34046779 34047100 -67333421 + AluYb8 SINE Alu 1 312 -6 323 269 54 78 chr15 34048126 34048293 -67332228 + MIR SINE MIR 45 207 -55 432 299 106 27 chr15 34049285 34049470 -67331051 + MIR3 SINE MIR 3 203 -59 854 215 77 19 chr15 34049588 34049797 -67330724 - MER45C DNA AcHobo 0 953 733 280 288 15 0 chr15 34049824 34049890 -67330631 - MER45C DNA AcHobo -299 654 588 1918 178 125 18 chr15 34049908 34050291 -67330230 + MSTB LTR MaLR 1 424 -2 799 271 82 22 chr15 34050498 34050767 -67329754 - MER45C DNA AcHobo -666 287 3 193 306 180 9 chr15 34050793 34050904 -67329617 - MIR SINE MIR -88 174 45 1390 108 51 0 chr15 34051663 34051877 -67328644 + LTR39 LTR ERV1 1 225 -558 2880 165 114 13 chr15 34051877 34052423 -67328098 - LTR36 LTR ERV1 0 611 11 3518 154 13 4 chr15 34052431 34052988 -67327533 + LTR39 LTR ERV1 221 782 -1 399 287 201 6 chr15 34053665 34053839 -67326682 + MIR SINE MIR 29 236 -26 240 35 0 0 chr15 34054841 34054870 -67325651 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 343 289 82 35 chr15 34055984 34056137 -67324384 - MIR SINE MIR -58 150 42 192 231 0 0 chr15 34056160 34056199 -67324322 + MIR SINE MIR 105 143 -65 700 251 17 28 chr15 34057015 34057194 -67323327 + MER5B DNA MER1_type 1 177 -1 501 295 61 7 chr15 34057737 34057959 -67322562 + MIR SINE MIR 24 255 -7 271 170 21 0 chr15 34058700 34058747 -67321774 - L2 LINE L2 -18 3254 3207 2447 68 0 0 chr15 34059956 34060249 -67320272 + AluY SINE Alu 1 293 -18 700 159 26 0 chr15 34060446 34060559 -67319962 - FLAM_C SINE Alu -1 142 27 50 31 0 0 chr15 34061621 34061685 -67318836 + AT_rich Low_complexity Low_complexity 1 64 0 291 239 74 37 chr15 34061689 34061852 -67318669 + MER113 DNA MER1_type? 2 170 -351 229 250 31 16 chr15 34061887 34061951 -67318570 + MER113 DNA MER1_type? 454 518 -3 246 32 0 0 chr15 34063364 34063395 -67317126 + (TG)n Simple_repeat Simple_repeat 2 32 0 347 261 68 50 chr15 34064209 34064318 -67316203 + MIR3 SINE MIR 44 158 -50 1520 218 3 7 chr15 34064318 34064607 -67315914 - AluJo SINE Alu -23 289 2 347 261 68 50 chr15 34064607 34064658 -67315863 + MIR3 SINE MIR 158 207 -1 476 276 26 0 chr15 34064784 34064900 -67315621 + MIR SINE MIR 59 177 -85 718 253 0 22 chr15 34066548 34066730 -67313791 + MER5B DNA MER1_type 1 178 0 291 54 0 0 chr15 34066888 34066925 -67313596 + (CA)n Simple_repeat Simple_repeat 2 38 0 465 307 80 7 chr15 34067062 34067212 -67313309 + MIR3 SINE MIR 32 192 -16 205 129 0 0 chr15 34067378 34067409 -67313112 + MIR SINE MIR 47 77 -131 1634 157 23 20 chr15 34067512 34067818 -67312703 + AluJb SINE Alu 1 307 -5 353 283 107 23 chr15 34068564 34068741 -67311780 + MER117 DNA MER1_type 1 192 -5 205 254 91 0 chr15 34069918 34069973 -67310548 - L3 LINE CR1 -7 1570 1511 211 182 0 105 chr15 34070262 34070328 -67310193 - MIR SINE MIR -60 148 102 21 36 0 0 chr15 34070577 34070605 -67309916 + AT_rich Low_complexity Low_complexity 1 28 0 37673 91 14 8 chr15 34070605 34076700 -67303821 - L1PA6 LINE L1 -13 6141 11 285 364 31 16 chr15 34077422 34077551 -67302970 - MIR SINE MIR -108 154 24 1755 273 33 27 chr15 34077817 34078330 -67302191 + LTR33 LTR ERVL 3 518 -3 243 317 3 26 chr15 34078890 34079004 -67301517 + MIR SINE MIR 1 110 -98 388 296 30 7 chr15 34079235 34079370 -67301151 + MERVL LTR ERVL 3201 3338 -2147 681 269 77 24 chr15 34079380 34079734 -67300787 - MLT1C LTR MaLR -2 465 78 43350 37 23 1 chr15 34079740 34085754 -67294767 + L1PA3 LINE L1 4 6155 0 1724 91 0 5 chr15 34085844 34086065 -67294456 - L1PA8 LINE L1 -14 6158 5939 452 287 41 0 chr15 34086113 34086235 -67294286 + MERVL LTR ERVL 3383 3509 -2255 1202 349 88 11 chr15 34086278 34087028 -67293493 + MERVL LTR ERVL 3544 4351 -1303 717 371 57 14 chr15 34087264 34087895 -67292626 + MERVL LTR ERVL 4682 5339 -315 1841 141 57 3 chr15 34088186 34088483 -67292038 - AluSq SINE Alu 0 313 1 787 271 72 12 chr15 34088485 34088890 -67291631 + LTR33 LTR ERVL 31 514 -7 370 316 44 0 chr15 34089255 34089369 -67291152 - L2 LINE L2 -2 3311 3193 194 196 0 89 chr15 34091944 34092000 -67288521 + L2 LINE L2 3262 3312 -1 1048 127 0 11 chr15 34092101 34092140 -67288381 + (TTCC)n Simple_repeat Simple_repeat 1 217 0 1048 127 0 11 chr15 34092140 34092321 -67288200 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 2822 222 87 33 chr15 34093641 34094414 -67286107 - L1ME1 LINE L1 -18 6148 5327 234 0 0 0 chr15 34094414 34094440 -67286081 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 2822 222 87 33 chr15 34094440 34094481 -67286040 - L1ME1 LINE L1 -839 5327 5290 * 33174 104 10 56 chr15 34094480 34100913 -67279608 - L1PA7 LINE L1 -20 6134 12 467 123 49 0 chr15 34100947 34101028 -67279493 - L1MA6 LINE L1 0 6300 6216 260 191 36 24 chr15 34101089 34101106 -67279415 - L1ME1 LINE L1 -870 5276 5261 1809 75 34 41 chr15 34101106 34101374 -67279147 - L1MA1 LINE L1 0 6302 6037 260 191 36 24 chr15 34101374 34101440 -67279081 - L1ME1 LINE L1 -885 5261 5192 1320 286 78 13 chr15 34101618 34102080 -67278441 - L2 LINE L2 0 3313 2822 1990 199 54 7 chr15 34102106 34102513 -67278008 + MER63B DNA MER1_type 1 426 -10 3399 256 94 35 chr15 34102526 34103723 -67276798 - L2 LINE L2 -481 2833 1567 379 354 75 54 chr15 34103881 34104308 -67276213 + L2 LINE L2 1261 1696 -1618 208 344 53 26 chr15 34104587 34104738 -67275783 - L3b LINE CR1 -208 1375 1221 275 264 172 0 chr15 34105652 34105739 -67274782 + MIR3 SINE MIR 100 201 -7 502 325 98 20 chr15 34106676 34106971 -67273550 - MLT1I LTR MaLR -11 398 81 400 357 53 65 chr15 34108147 34108503 -67272018 - L2 LINE L2 0 3272 2921 726 279 44 24 chr15 34108715 34108966 -67271555 + MIR SINE MIR 1 256 -6 2037 35 0 0 chr15 34109050 34109281 -67271240 - L1PA4 LINE L1 0 6155 5925 207 0 0 0 chr15 34109543 34109566 -67270955 + (TTG)n Simple_repeat Simple_repeat 2 24 0 229 255 20 41 chr15 34109871 34109899 -67270622 + LTR67 LTR ERVL 457 551 -5 267 261 14 0 chr15 34109899 34109968 -67270553 + MLT1K LTR MaLR 513 582 -6 219 339 70 17 chr15 34110213 34110328 -67270193 - L2 LINE L2 -223 3049 2929 183 179 103 0 chr15 34110337 34110376 -67270145 - L2 LINE L2 -6 3266 3224 7262 78 3 1 chr15 34110488 34111786 -67268735 + L1PA8 LINE L1 4871 6170 -2 290 125 12 113 chr15 34111844 34111924 -67268597 - L1M4 LINE L1 -1899 4247 4176 297 254 173 0 chr15 34111970 34112080 -67268441 + L2 LINE L2 1214 1342 -1972 5331 54 0 8 chr15 34112180 34112810 -67267711 + L1PA6 LINE L1 5530 6154 0 948 138 7 0 chr15 34113235 34113387 -67267134 - L1MA4 LINE L1 -8 6292 6140 243 250 59 15 chr15 34113493 34113561 -67266960 + MIR SINE MIR 118 188 -74 444 304 78 70 chr15 34114986 34115331 -67265190 + L2 LINE L2 2922 3269 -3 457 360 101 29 chr15 34115423 34115831 -67264690 + L3b LINE CR1 1108 1544 -39 1990 199 70 41 chr15 34118161 34118644 -67261877 - MLT1D LTR MaLR -8 497 1 514 342 53 13 chr15 34118792 34119020 -67261501 + MIR SINE MIR 18 254 -8 290 95 0 0 chr15 34119020 34119062 -67261459 + MADE1 DNA Mariner 39 80 0 605 242 105 0 chr15 34120156 34120309 -67260212 - MLT1H LTR MaLR 0 549 381 948 253 20 29 chr15 34120344 34120589 -67259932 - MLT1H LTR MaLR -247 302 60 27 29 0 0 chr15 34120662 34120696 -67259825 + AT_rich Low_complexity Low_complexity 1 34 0 2761 97 16 11 chr15 34120828 34121201 -67259320 + THE1C LTR MaLR 1 375 0 2347 190 33 2 chr15 34121786 34122212 -67258309 - L1MB1 LINE L1 -1 6167 5729 2417 133 11 49 chr15 34122226 34122679 -67257842 + L1MB1 LINE L1 5296 5731 -437 227 238 0 32 chr15 34123622 34123685 -67256836 + L2 LINE L2 3201 3261 -11 331 292 85 15 chr15 34127466 34127596 -67252925 + MIR SINE MIR 124 262 0 688 264 102 0 chr15 34128071 34128268 -67252253 - MIR SINE MIR -1 261 45 233 237 84 99 chr15 34128568 34128699 -67251822 - MIR3 SINE MIR -46 162 34 1571 110 0 0 chr15 34128803 34129003 -67251518 + AluSg/x SINE Alu 100 299 -13 13880 91 10 3 chr15 34129609 34132209 -67248312 - L1PA7 LINE L1 0 6154 3523 2014 99 0 37 chr15 34132283 34132577 -67247944 - AluY SINE Alu -5 306 24 44521 43 3 2 chr15 34132973 34139116 -67241405 - L1PA3 LINE L1 0 6155 2 192 297 33 33 chr15 34139410 34139501 -67241020 - L2 LINE L2 0 3313 3223 2250 87 0 20 chr15 34139549 34139847 -67240674 - AluY SINE Alu -19 292 1 322 309 64 0 chr15 34140027 34140137 -67240384 + L2 LINE L2 3160 3276 -37 2217 132 0 0 chr15 34141697 34142001 -67238520 - AluSc SINE Alu -5 304 1 1202 154 0 0 chr15 34143176 34143351 -67237170 + AluJo SINE Alu 1 175 -137 188 328 60 15 chr15 34143475 34143542 -67236979 - MIR3 SINE MIR -42 166 97 1888 170 3 3 chr15 34143987 34144348 -67236173 - AluJo SINE Alu 0 361 1 2530 67 0 6 chr15 34144897 34145209 -67235312 - AluY SINE Alu 0 311 2 24 32 0 0 chr15 34145592 34145623 -67234898 + AT_rich Low_complexity Low_complexity 1 31 0 2706 49 0 0 chr15 34146069 34146377 -67234144 + AluY SINE Alu 1 308 -3 28 0 0 0 chr15 34146638 34146666 -67233855 + AT_rich Low_complexity Low_complexity 1 28 0 925 284 52 52 chr15 34147177 34147673 -67232848 - L2 LINE L2 0 3313 2818 1594 234 64 51 chr15 34147715 34148185 -67232336 - MER45C DNA AcHobo 0 953 478 1401 274 18 0 chr15 34148244 34148583 -67231938 - MER45C DNA AcHobo -600 353 9 371 254 239 24 chr15 34148590 34148687 -67231834 - L2 LINE L2 -518 2796 2721 2119 128 0 3 chr15 34148687 34148992 -67231529 + AluSx SINE Alu 1 304 -8 371 254 239 24 chr15 34148992 34149103 -67231418 - L2 LINE L2 -593 2721 2543 21 0 0 0 chr15 34149334 34149355 -67231166 + AT_rich Low_complexity Low_complexity 1 21 0 9515 45 1 9 chr15 34149576 34149624 -67230897 + L1P LINE L1 4061 4108 -2038 7724 39 23 0 chr15 34149624 34150553 -67229968 - L1PA5 LINE L1 0 6154 5224 9515 45 1 9 chr15 34150553 34151670 -67228851 + L1PA5 LINE L1 4108 5217 -929 298 260 9 151 chr15 34153846 34154065 -67226456 - MIR3 SINE MIR -3 205 18 547 322 105 30 chr15 34155102 34155397 -67225124 - L2 LINE L2 -17 3255 2939 530 69 97 0 chr15 34157432 34157504 -67223017 + MADE1 DNA Mariner 2 80 0 701 238 52 43 chr15 34158895 34159067 -67221454 - L2 LINE L2 -1 3312 3136 1261 232 42 62 chr15 34159067 34159468 -67221053 + MLT2C1 LTR ERVL 1 393 -4 701 238 52 43 chr15 34159468 34159526 -67220995 - L2 LINE L2 -177 3136 3080 245 271 49 62 chr15 34160695 34160839 -67219682 - L2 LINE L2 0 3313 3172 218 328 0 0 chr15 34161181 34161242 -67219279 + L2 LINE L2 3249 3309 -4 279 81 0 0 chr15 34161699 34161736 -67218785 - AluSp SINE Alu -133 170 134 21 57 0 0 chr15 34162066 34162101 -67218420 + AT_rich Low_complexity Low_complexity 1 35 0 285 29 0 0 chr15 34162204 34162238 -67218283 + (TG)n Simple_repeat Simple_repeat 2 35 0 364 299 58 19 chr15 34162541 34162695 -67217826 - MIR SINE MIR -4 258 99 417 356 78 7 chr15 34164254 34164538 -67215983 + L2 LINE L2 2298 2601 -713 1320 210 45 0 chr15 34165866 34166109 -67214412 + Tigger7 DNA MER2_type 2 255 -2232 303 256 26 0 chr15 34166107 34166185 -67214336 + Tigger7 DNA MER2_type 2408 2487 0 * 5377 141 40 0 chr15 34167340 34168218 -67212303 - L1MA4 LINE L1 0 6300 5388 521 200 0 92 chr15 34168368 34168498 -67212023 - MLT1I LTR MaLR 0 409 292 2995 171 5 56 chr15 34168566 34169139 -67211382 + MLT2B3 LTR ERVL 3 546 -8 317 91 0 0 chr15 34169182 34169226 -67211295 + tRNA-Cys-TGC tRNA tRNA 2 45 -30 523 138 53 32 chr15 34169323 34169417 -67211104 - L1MC2 LINE L1 -13 6331 6236 1481 188 14 17 chr15 34169468 34169755 -67210766 - AluJb SINE Alu -26 286 1 360 100 22 133 chr15 34169756 34169846 -67210675 - L1MC2 LINE L1 -1931 5854 5775 510 254 34 0 chr15 34169857 34169975 -67210546 - MLT1I LTR MaLR -277 132 11 2784 155 9 7 chr15 34170275 34170708 -67209813 + MER57B LTR ERV1 1 434 0 1151 214 255 23 chr15 34170805 34171387 -67209134 - LTR50 LTR ERVL -43 683 1 349 306 155 27 chr15 34171939 34172158 -67208363 + MIR SINE MIR 6 252 -10 444 222 196 26 chr15 34173221 34173415 -67207106 - MLT1L LTR MaLR -46 569 343 411 207 24 134 chr15 34173584 34173635 -67206886 - MIR SINE MIR 0 262 207 1970 131 0 0 chr15 34173635 34173932 -67206589 - AluSx SINE Alu 0 307 11 411 207 24 134 chr15 34173932 34174043 -67206478 - MIR SINE MIR -55 207 117 574 242 51 66 chr15 34174044 34174300 -67206221 - MER112 DNA MER1_type -1 259 8 452 260 58 0 chr15 34174311 34174415 -67206106 - MIR SINE MIR -151 111 2 218 305 182 13 chr15 34174739 34174893 -67205628 - MIR3 SINE MIR -13 195 16 210 71 0 0 chr15 34175150 34175178 -67205343 + (T)n Simple_repeat Simple_repeat 1 28 0 206 313 0 50 chr15 34176430 34176510 -67204011 + MIR3 SINE MIR 10 85 -123 359 117 39 71 chr15 34176562 34176716 -67203805 + (TA)n Simple_repeat Simple_repeat 2 150 0 257 250 171 29 chr15 34176716 34176856 -67203665 - MIR SINE MIR -101 161 2 * 289 266 94 31 chr15 34176856 34176971 -67203550 + MIR3 SINE MIR 79 201 -7 7072 69 25 0 chr15 34178731 34179874 -67200647 + L1PA8 LINE L1 5006 6170 -2 290 125 12 113 chr15 34179932 34180012 -67200509 - L1M4 LINE L1 -1899 4247 4176 832 246 102 35 chr15 34180058 34180343 -67200178 + L2 LINE L2 1214 1517 -1797 961 296 141 22 chr15 34180344 34181175 -67199346 - L1M4 LINE L1 -2327 3819 2890 36 40 0 0 chr15 34181368 34181418 -67199103 + AT_rich Low_complexity Low_complexity 1 50 0 851 222 19 3 chr15 34181525 34181793 -67198728 - MLT1A1 LTR MaLR 0 365 1 226 203 177 63 chr15 34182466 34182624 -67197897 - L1ME4a LINE L1 -18 6103 5928 1797 165 28 3 chr15 34182916 34183207 -67197314 + AluSx SINE Alu 1 298 -14 1361 266 81 16 chr15 34233772 34234457 -67146064 + L2 LINE L2 2587 3313 0 2035 47 16 0 chr15 34235239 34235496 -67145025 - L1PA7 LINE L1 -2 6152 5892 858 108 0 0 chr15 34235761 34235881 -67144640 + AluSq/x SINE Alu 1 120 -193 1281 88 0 0 chr15 34237517 34237676 -67142845 - AluSc SINE Alu -150 159 1 254 380 0 0 chr15 34238314 34238456 -67142065 - MER117 DNA MER1_type 0 197 56 877 137 0 0 chr15 34238667 34238806 -67141715 + MER4B LTR ERV1 1 139 -471 193 250 0 0 chr15 34239556 34239596 -67140925 - L2 LINE L2 -253 3060 3021 2163 73 0 7 chr15 34239596 34239869 -67140652 - AluY SINE Alu -10 301 31 888 113 14 0 chr15 34239869 34240010 -67140511 - L1PA15-16 LINE L1 -4976 1873 1731 1257 232 21 18 chr15 34240019 34240346 -67140175 - L1PA15-16 LINE L1 -5257 1592 1265 1202 131 44 0 chr15 34240506 34240712 -67139809 - L1PB2 LINE L1 0 6151 5937 1489 221 3 3 chr15 34240812 34241115 -67139406 + MLT1A1 LTR MaLR 36 338 -27 395 233 200 9 chr15 34241126 34241245 -67139276 + MER112 DNA MER1_type 1 96 -160 768 11 0 0 chr15 34241245 34241334 -67139187 + (CTATG)n Simple_repeat Simple_repeat 2 90 0 395 233 200 9 chr15 34241334 34241429 -67139092 + MER112 DNA MER1_type 96 256 0 339 374 88 3 chr15 34241617 34241911 -67138610 - L2 LINE L2 -1274 2040 1722 1383 120 15 5 chr15 34242614 34242814 -67137707 - AluSc SINE Alu -3 306 105 21 0 0 0 chr15 34243023 34243044 -67137477 + AT_rich Low_complexity Low_complexity 1 21 0 222 405 24 0 chr15 34244508 34244634 -67135887 + L3 LINE CR1 1446 1574 -3 286 258 21 43 chr15 34245625 34245718 -67134803 + L2 LINE L2 3175 3265 -48 2803 10 0 3 chr15 34245942 34246253 -67134268 - AluYa5 SINE Alu 0 311 2 828 270 115 32 chr15 34246711 34247214 -67133307 - L1ME3A LINE L1 -5 6165 5621 2076 116 10 10 chr15 34247225 34247518 -67133003 - AluSx SINE Alu -17 295 3 23 68 0 0 chr15 34247619 34247663 -67132858 + AT_rich Low_complexity Low_complexity 1 44 0 548 14 0 0 chr15 34247747 34247816 -67132705 + L1PA2 LINE L1 6083 6151 -4 5153 146 13 3 chr15 34248660 34250089 -67130432 - L1PA16 LINE L1 -9 6157 4718 776 155 0 0 chr15 34250194 34250323 -67130198 - L1M2 LINE L1 -541 5771 5643 280 263 177 5 chr15 34250372 34250581 -67129940 - LTR33 LTR ERVL -20 501 257 2499 41 0 0 chr15 34251229 34251520 -67129001 - AluY SINE Alu -20 291 1 373 325 186 5 chr15 34251578 34251772 -67128749 + MIR SINE MIR 34 262 0 234 0 0 0 chr15 34252333 34252359 -67128162 + (T)n Simple_repeat Simple_repeat 1 26 0 199 308 124 72 chr15 34253430 34253585 -67126936 + L2 LINE L2 1950 2096 -1218 1712 145 20 110 chr15 34253585 34253984 -67126537 - MLT1A1 LTR MaLR 0 365 3 199 308 124 72 chr15 34253984 34254367 -67126154 + L2 LINE L2 2096 2516 -798 23 68 0 0 chr15 34255049 34255093 -67125428 + AT_rich Low_complexity Low_complexity 1 44 0 201 339 73 26 chr15 34255625 34255817 -67124704 + L2 LINE L2 1993 2193 -1121 920 60 8 0 chr15 34255858 34255975 -67124546 - L1PA8 LINE L1 -15 6157 6040 232 128 0 0 chr15 34255975 34256014 -67124507 + L1P LINE L1 2716 2754 -3392 185 301 108 12 chr15 34256220 34256303 -67124218 + L2 LINE L2 2439 2529 -785 452 286 122 31 chr15 34256431 34256725 -67123796 + L2 LINE L2 2406 2726 -588 940 242 62 62 chr15 34256728 34257244 -67123277 - L1MCc LINE L1 -1792 5149 4634 6333 204 44 14 chr15 34257255 34260543 -67119978 - L1MCc LINE L1 -2946 3995 614 713 200 31 128 chr15 34260545 34260943 -67119578 - L1M4 LINE L1 -3195 2951 2601 1674 80 0 9 chr15 34260943 34261155 -67119366 - AluY SINE Alu -16 295 86 713 200 31 128 chr15 34261155 34261211 -67119310 - L1M4 LINE L1 -3545 2601 2541 855 251 74 67 chr15 34261303 34261750 -67118771 - L1MCc LINE L1 -5961 462 13 285 296 0 0 chr15 34261793 34261874 -67118647 - HAL1 LINE L1 -2195 312 232 22 0 0 0 chr15 34262240 34262262 -67118259 + AT_rich Low_complexity Low_complexity 1 22 0 1974 118 0 28 chr15 34262277 34262565 -67117956 - AluSx SINE Alu -30 282 3 864 208 17 17 chr15 34263033 34263206 -67117315 + MER5B DNA MER1_type 1 173 -5 22 35 0 0 chr15 34263532 34263561 -67116960 + AT_rich Low_complexity Low_complexity 1 29 0 2006 181 69 16 chr15 34263730 34264166 -67116355 + LOR1b LTR ERV1 3 461 0 2466 45 3 0 chr15 34265361 34265711 -67114810 - AluY SINE Alu 0 351 1 238 281 68 64 chr15 34266426 34266661 -67113860 + L1ME LINE L1 5542 5780 -341 312 205 26 13 chr15 34266661 34266739 -67113782 - MER116 DNA Mariner -1 79 1 238 281 68 64 chr15 34266739 34266784 -67113737 + L1ME LINE L1 5780 5823 -298 180 152 0 0 chr15 34266869 34266902 -67113619 + (CA)n Simple_repeat Simple_repeat 1 33 0 2147 113 7 16 chr15 34267716 34268049 -67112472 - AluSg SINE Alu 0 330 1 21 0 0 0 chr15 34268164 34268185 -67112336 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr15 34271556 34271582 -67108939 + AT_rich Low_complexity Low_complexity 1 26 0 189 74 0 0 chr15 34272532 34272559 -67107962 + (CCCA)n Simple_repeat Simple_repeat 2 28 0 30 83 0 0 chr15 34272567 34272639 -67107882 + AT_rich Low_complexity Low_complexity 1 72 0 8251 123 101 1 chr15 34272930 34274340 -67106181 - Tigger1 DNA MER2_type -1 2417 868 2124 134 20 3 chr15 34274345 34274695 -67105826 - L1PA15 LINE L1 -20 6145 5790 * 11251 214 26 17 chr15 34274686 34274764 -67105757 - L1PA15 LINE L1 -593 5572 5496 2288 74 0 0 chr15 34274764 34275075 -67105446 - AluY SINE Alu 0 311 1 11251 214 26 17 chr15 34275075 34275250 -67105271 - L1PA15 LINE L1 -669 5496 5324 2322 111 0 9 chr15 34275250 34275565 -67104956 - AluSp SINE Alu -1 312 1 11251 214 26 17 chr15 34275565 34278606 -67101915 - L1PA15 LINE L1 -841 5324 2244 249 83 0 0 chr15 34279136 34279172 -67101349 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 1866 126 47 4 chr15 34279193 34279470 -67101051 - AluSx SINE Alu -19 293 5 5999 92 9 26 chr15 34279526 34281074 -67099447 + L1PA10 LINE L1 4632 6150 -18 443 300 163 12 chr15 34281095 34281335 -67099186 - L2 LINE L2 -61 3252 2977 304 283 165 110 chr15 34282531 34282803 -67097718 - L2 LINE L2 0 3272 2986 512 230 79 0 chr15 34283063 34283189 -67097332 - MIR SINE MIR -56 206 71 382 226 0 48 chr15 34283266 34283350 -67097171 - L2 LINE L2 -4 3309 3230 326 266 64 0 chr15 34284509 34284603 -67095918 + MIR SINE MIR 65 164 -98 1702 129 94 15 chr15 34286493 34286834 -67093687 - THE1C LTR MaLR 0 375 8 398 239 106 21 chr15 34286842 34286984 -67093537 + MIR SINE MIR 32 185 -77 2288 84 0 47 chr15 34287854 34288174 -67092347 - AluSg SINE Alu -5 305 1 629 184 86 0 chr15 34288569 34288732 -67091789 - L1MA9 LINE L1 -38 6274 6098 292 111 0 0 chr15 34288849 34288894 -67091627 - MER2 DNA MER2_type -138 207 163 4026 234 36 35 chr15 34289010 34290035 -67090486 - L1PA13 LINE L1 -3817 2980 1958 1974 129 30 10 chr15 34290035 34290338 -67090183 - AluSc SINE Alu 0 309 1 4026 234 36 35 chr15 34290338 34291787 -67088734 - L1PA13 LINE L1 -4839 1958 5 4704 189 6 2 chr15 34291796 34292680 -67087841 - Tigger1 DNA MER2_type -1527 891 5 279 252 244 4 chr15 34292795 34292933 -67087588 + HAL1 LINE L1 1040 1144 -1363 833 105 23 8 chr15 34292933 34293066 -67087455 - L1MA4 LINE L1 -11 6289 6155 279 252 244 4 chr15 34293066 34293181 -67087340 + HAL1 LINE L1 1144 1354 -1153 3173 100 14 8 chr15 34293235 34293717 -67086804 + L1PA13 LINE L1 5678 6162 -1 765 275 158 7 chr15 34294083 34294487 -67086034 + HAL1 LINE L1 1406 1870 -637 464 222 61 25 chr15 34294490 34294688 -67085833 + HAL1 LINE L1 1956 2160 -347 446 281 145 56 chr15 34295129 34295432 -67085089 + MER102a DNA MER1_type 1 330 0 192 277 168 10 chr15 34295834 34295935 -67084586 + MIR3 SINE MIR 2 118 -90 7355 153 16 22 chr15 34296041 34297905 -67082616 + L1PB1 LINE L1 3663 5510 -641 1906 135 0 25 chr15 34297905 34298186 -67082335 - AluSx SINE Alu -36 276 3 7355 153 16 22 chr15 34298186 34298821 -67081700 + L1PB1 LINE L1 5510 6147 -4 233 241 48 36 chr15 34299424 34299507 -67081014 + MER94 DNA DNA 16 99 -35 320 164 49 0 chr15 34299523 34299584 -67080937 + MIR SINE MIR 197 260 -2 528 321 67 75 chr15 34301269 34301765 -67078756 - L2 LINE L2 -8 3305 2814 293 363 20 0 chr15 34301861 34301963 -67078558 - MIR SINE MIR -88 120 17 411 194 119 0 chr15 34302291 34302425 -67078096 + MER113 DNA MER1_type? 1 150 -371 223 374 136 20 chr15 34302664 34302862 -67077659 + L2 LINE L2 2553 2773 -541 198 0 0 0 chr15 34303975 34303997 -67076524 + (CA)n Simple_repeat Simple_repeat 1 22 0 1070 119 0 0 chr15 34304006 34304149 -67076372 - AluSg/x SINE Alu -19 293 151 266 318 159 8 chr15 34305738 34305864 -67074657 - MIR SINE MIR -70 192 48 285 284 69 15 chr15 34306838 34307042 -67073479 - L1ME LINE L1 -376 5745 5531 21 0 0 0 chr15 34307071 34307092 -67073429 + AT_rich Low_complexity Low_complexity 1 21 0 565 138 23 89 chr15 34308017 34308156 -67072365 - MLT1D LTR MaLR -313 154 21 2195 103 13 0 chr15 34309142 34309442 -67071079 + AluY SINE Alu 1 304 -7 263 347 0 0 chr15 34309447 34309522 -67070999 - MIR SINE MIR -157 105 31 26 0 0 0 chr15 34310017 34310043 -67070478 + AT_rich Low_complexity Low_complexity 1 26 0 319 214 24 12 chr15 34310229 34310313 -67070208 + AluJ/FLAM SINE Alu 18 102 -200 383 229 10 0 chr15 34310363 34310459 -67070062 - L1MD1 LINE L1 -410 5832 5736 1019 167 52 0 chr15 34310590 34310764 -67069757 + AluJo SINE Alu 120 302 -10 459 217 9 0 chr15 34311164 34311270 -67069251 + L1ME1 LINE L1 5733 5839 -327 2475 152 7 7 chr15 34311605 34312053 -67068468 + L1MA5 LINE L1 5853 6300 0 260 213 49 0 chr15 34312214 34312275 -67068246 + L2 LINE L2 3242 3305 -8 753 181 0 0 chr15 34312717 34312844 -67067677 + FLAM_C SINE Alu 1 127 -16 872 194 213 18 chr15 34312952 34313281 -67067240 + L1MD2 LINE L1 1967 2359 -4037 1164 208 17 28 chr15 34313308 34313596 -67066925 + L1MD2 LINE L1 5627 5911 -517 872 261 92 0 chr15 34313585 34313846 -67066675 + L1ME LINE L1 5411 5695 -471 * 328 204 92 10 chr15 34313844 34313942 -67066579 + L1MA10 LINE L1 6225 6330 -4 * 524 253 76 34 chr15 34313984 34314312 -67066209 + L1MEc LINE L1 3039 3380 -2835 2706 206 89 59 chr15 34314321 34314865 -67065656 - MER63D DNA MER1_type -2 1059 533 180 0 0 0 chr15 34314865 34314885 -67065636 + (TC)n Simple_repeat Simple_repeat 2 21 0 2706 206 89 59 chr15 34314885 34315172 -67065349 - MER63D DNA MER1_type -528 533 189 2334 83 0 34 chr15 34315172 34315496 -67065025 + AluSq SINE Alu 1 313 0 2706 206 89 59 chr15 34315496 34315683 -67064838 - MER63D DNA MER1_type -872 189 9 266 290 51 14 chr15 34315737 34315875 -67064646 + L1MEc LINE L1 3439 3581 -2634 218 60 60 20 chr15 34315948 34315998 -67064523 + (TA)n Simple_repeat Simple_repeat 1 52 0 942 274 102 10 chr15 34316011 34316501 -67064020 + L1MEc LINE L1 3968 4502 -1713 330 269 15 90 chr15 34316585 34316759 -67063762 - MLT1H LTR MaLR -344 205 3 887 272 30 59 chr15 34316788 34317229 -67063292 - L1MCc LINE L1 -5978 445 18 213 39 0 0 chr15 34318730 34318756 -67061765 + (TG)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr15 34319234 34319255 -67061266 + AT_rich Low_complexity Low_complexity 1 21 0 226 204 41 0 chr15 34320332 34320381 -67060140 - L2 LINE L2 0 3313 3263 264 336 9 19 chr15 34320627 34320734 -67059787 - L2 LINE L2 -1 3312 3207 2219 255 75 20 chr15 34320783 34322217 -67058304 - L1ME2 LINE L1 -10 6223 4684 2561 244 41 35 chr15 34322239 34322456 -67058065 - L1ME2 LINE L1 -1695 4520 4306 189 0 0 0 chr15 34322456 34322477 -67058044 + (TG)n Simple_repeat Simple_repeat 2 22 0 2561 244 41 35 chr15 34322477 34322675 -67057846 - L1ME2 LINE L1 -1909 4306 4111 1523 146 34 19 chr15 34322675 34322843 -67057678 - L1MC2 LINE L1 -1 6343 6166 1977 185 3 8 chr15 34322843 34323210 -67057311 - MLT1A1 LTR MaLR 0 365 1 1523 146 34 19 chr15 34323210 34323362 -67057159 - L1MC2 LINE L1 -178 6166 6018 2561 244 41 35 chr15 34323362 34323805 -67056716 - L1ME2 LINE L1 -2104 4111 3656 1471 122 0 0 chr15 34323957 34324162 -67056359 - AluSg/x SINE Alu -4 308 104 1811 64 13 0 chr15 34324164 34324400 -67056121 - THE1B-int LTR MaLR -1341 239 1 2155 118 51 25 chr15 34324400 34324755 -67055766 - THE1B LTR MaLR 0 364 1 314 270 65 51 chr15 34324781 34324996 -67055525 - HAL1 LINE L1 -861 1646 1429 385 272 91 64 chr15 34325000 34325518 -67055003 - L1ME2 LINE L1 -5083 1313 782 2669 171 24 40 chr15 34325552 34326102 -67054419 - L1PB4 LINE L1 -3 6153 5613 1890 163 79 11 chr15 34326102 34326806 -67053715 + L1PB4 LINE L1 4857 5612 -544 357 335 45 38 chr15 34327204 34327494 -67053027 - L1ME2 LINE L1 -6019 377 86 317 299 47 39 chr15 34327599 34327726 -67052795 - L1MC4a LINE L1 -1937 5871 5744 305 377 62 0 chr15 34327739 34327885 -67052636 - L1MC4a LINE L1 -2144 5664 5510 2407 119 19 24 chr15 34329060 34329288 -67051233 + THE1C LTR MaLR 1 228 -147 2383 115 19 22 chr15 34329288 34329653 -67050868 - THE1B LTR MaLR 0 364 1 2407 119 19 24 chr15 34329653 34329801 -67050720 + THE1C LTR MaLR 228 375 0 201 374 37 0 chr15 34330525 34330632 -67049889 + L2 LINE L2 3147 3257 -15 328 370 70 29 chr15 34330663 34331047 -67049474 - L2 LINE L2 -671 2643 2244 405 181 69 164 chr15 34331944 34332176 -67048345 + MER112 DNA MER1_type 3 212 -48 234 0 0 0 chr15 34332231 34332257 -67048264 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1808 145 0 10 chr15 34332267 34332577 -67047944 - AluYa5 SINE Alu 0 311 5 21 0 0 0 chr15 34332638 34332659 -67047862 + AT_rich Low_complexity Low_complexity 1 21 0 10285 238 35 19 chr15 34332949 34336906 -67043615 - L1PBb LINE L1 -1355 4848 781 349 276 0 8 chr15 34336920 34337043 -67043478 - L1PBb LINE L1 -3609 2594 2473 556 289 61 0 chr15 34337433 34337613 -67042908 - L1PBb LINE L1 -5324 880 690 * 3352 184 38 8 chr15 34337593 34338225 -67042296 - L1PA15-16 LINE L1 -5280 1569 919 475 258 18 18 chr15 34338220 34338383 -67042138 + L1MB7 LINE L1 5979 6141 -43 * 219 114 0 0 chr15 34338552 34338587 -67041934 + (TA)n Simple_repeat Simple_repeat 1 35 0 2331 92 0 13 chr15 34339297 34339603 -67040918 + AluY SINE Alu 1 302 -9 2105 123 7 3 chr15 34340018 34340326 -67040195 - AluSq SINE Alu -4 309 1 996 208 35 0 chr15 34340830 34341032 -67039489 + MER3 DNA MER1_type 1 209 0 192 152 0 0 chr15 34342569 34342602 -67037919 + (CATA)n Simple_repeat Simple_repeat 4 36 0 644 288 113 0 chr15 34346244 34346466 -67034055 + MIR SINE MIR 6 252 -10 231 227 0 30 chr15 34346991 34347057 -67033464 + L2 LINE L2 3165 3228 -85 23 54 0 0 chr15 34347079 34347116 -67033405 + AT_rich Low_complexity Low_complexity 1 37 0 441 318 85 0 chr15 34347191 34347380 -67033141 + MER63A DNA MER1_type 5 209 -1 570 188 16 70 chr15 34347517 34347645 -67032876 + MER68 LTR ERV1 1 121 -441 758 289 90 67 chr15 34349028 34349460 -67031061 - L2 LINE L2 -26 3287 2846 510 309 20 0 chr15 34350667 34350819 -67029702 - LTR67 LTR ERVL -9 548 394 306 345 23 40 chr15 34350983 34351157 -67029364 - LTR67 LTR ERVL -367 190 20 542 274 54 20 chr15 34351581 34351785 -67028736 - L1MC4 LINE L1 -480 7562 7352 4896 223 55 59 chr15 34351815 34353931 -67026590 + L1PA10 LINE L1 11 2163 -4298 * 4999 26 5 0 chr15 34353927 34354510 -67026011 - L1P LINE L1 -1852 4294 3709 3077 24 0 19 chr15 34354510 34354943 -67025578 + L1PA3 LINE L1 5789 6214 0 8369 144 32 8 chr15 34354959 34357648 -67022873 + L1PA10 LINE L1 2158 5013 -1470 2571 10 0 58 chr15 34357648 34357961 -67022560 - AluYa5 SINE Alu -16 295 1 8369 144 32 8 chr15 34357961 34359469 -67021052 + L1PA10 LINE L1 5013 6483 0 1605 238 57 63 chr15 34359478 34360290 -67020231 - L1MC4 LINE L1 -567 7321 6414 58 70 0 0 chr15 34360461 34360575 -67019946 + AT_rich Low_complexity Low_complexity 1 114 0 541 264 112 75 chr15 34360639 34361294 -67019227 - L1M4 LINE L1 -1726 4420 3742 22 35 0 0 chr15 34361373 34361402 -67019119 + AT_rich Low_complexity Low_complexity 1 29 0 515 311 50 53 chr15 34361948 34362269 -67018252 - L1MEd LINE L1 -4442 2098 1779 252 287 22 48 chr15 34362310 34362462 -67018059 - L1MEd LINE L1 -4866 1664 1390 4759 65 0 0 chr15 34363318 34363905 -67016616 + LTR14C LTR ERVK 1 587 0 482 289 57 44 chr15 34364128 34364356 -67016165 - MLT1J LTR MaLR -42 469 239 227 281 79 11 chr15 34364472 34364561 -67015960 - L1ME1 LINE L1 -93 6073 5979 1376 276 29 8 chr15 34364571 34365061 -67015460 + L1M4 LINE L1 3869 4368 -1778 4045 108 5 5 chr15 34365084 34365658 -67014863 + HERVK22 LTR ERVK 186 759 -6078 13029 98 5 14 chr15 34365940 34367500 -67013021 + HERVK22 LTR ERVK 2327 3870 -2967 2144 111 7 0 chr15 34367500 34367806 -67012715 - AluSg SINE Alu -2 308 1 13029 98 5 14 chr15 34367806 34368095 -67012426 + HERVK22 LTR ERVK 3870 4160 -2677 551 70 0 0 chr15 34368095 34368166 -67012355 + U3 snRNA snRNA 1 71 -146 2939 130 23 2 chr15 34368166 34368958 -67011563 + HERVK22 LTR ERVK 3172 6837 0 2050 184 87 17 chr15 34368958 34369430 -67011091 + LTR22 LTR ERVK 1 505 -4 1461 307 89 29 chr15 34369458 34370565 -67009956 - L1MEc LINE L1 -5131 1265 92 229 185 154 0 chr15 34370642 34370707 -67009814 - MLT1J LTR MaLR -345 166 92 198 265 249 28 chr15 34371506 34371687 -67008834 + L2 LINE L2 3035 3255 -58 232 246 0 18 chr15 34372528 34372585 -67007936 + GA-rich Low_complexity Low_complexity 1 56 0 413 272 154 0 chr15 34374097 34374259 -67006262 - MIR SINE MIR -12 250 64 328 140 0 0 chr15 34374892 34374942 -67005579 - MER94 DNA DNA -83 51 2 415 266 72 43 chr15 34375132 34375271 -67005250 + MER5B DNA MER1_type 11 142 -36 1294 153 40 22 chr15 34381489 34381712 -66998809 + Charlie3 DNA MER1_type 6 232 -2478 * 1735 102 35 12 chr15 34381707 34381962 -66998559 + Charlie3 DNA MER1_type 2442 2702 -8 235 310 111 63 chr15 34382622 34382802 -66997719 + MLT1K LTR MaLR 305 504 -84 1427 219 123 10 chr15 34382802 34383217 -66997304 - LTR40b LTR ERVL 0 462 1 235 310 111 63 chr15 34383217 34383307 -66997214 + MLT1K LTR MaLR 504 588 0 211 347 14 0 chr15 34384030 34384102 -66996419 + L2 LINE L2 3200 3272 0 1939 214 112 0 chr15 34384761 34385233 -66995288 + L1MC4 LINE L1 6479 7003 -1039 540 204 36 8 chr15 34385257 34385393 -66995128 + L1MC4 LINE L1 7880 7995 0 231 241 98 30 chr15 34385407 34385540 -66994981 + L1MC5 LINE L1 7800 7941 -20 228 163 0 0 chr15 34386221 34386264 -66994257 + (TG)n Simple_repeat Simple_repeat 2 44 0 338 235 12 12 chr15 34387170 34387251 -66993270 - MIR SINE MIR -1 261 181 22 0 0 0 chr15 34388511 34388533 -66991988 + AT_rich Low_complexity Low_complexity 1 22 0 9379 29 3 0 chr15 34388533 34390426 -66990095 - L1PA3 LINE L1 0 6155 4265 618 198 40 16 chr15 34391570 34391696 -66988825 + FLAM_A SINE Alu 4 132 -1 331 227 100 53 chr15 34393588 34393738 -66986783 + MIR SINE MIR 100 256 -6 350 241 13 0 chr15 34393786 34393865 -66986656 + Tigger5 DNA MER2_type 1 80 -2243 281 186 51 17 chr15 34393866 34393925 -66986596 - Tigger5 DNA MER2_type -6 2317 2257 * 318 152 0 0 chr15 34393924 34393970 -66986551 + Tigger5 DNA MER2_type 2278 2323 0 2228 121 0 0 chr15 34395752 34396059 -66984462 + AluSp SINE Alu 1 307 -6 465 322 17 34 chr15 34396127 34396304 -66984217 + MER5B DNA MER1_type 2 175 -3 660 191 22 0 chr15 34397399 34397535 -66982986 - MER33 DNA MER1_type -185 139 1 348 335 124 15 chr15 34397669 34398072 -66982449 + L1M4 LINE L1 4309 4755 -1391 5856 148 12 4 chr15 34398096 34399046 -66981475 + L1PB1 LINE L1 4824 5767 -384 318 50 0 0 chr15 34399046 34399086 -66981435 + (TA)n Simple_repeat Simple_repeat 1 40 0 5856 148 12 4 chr15 34399086 34399474 -66981047 + L1PB1 LINE L1 5767 6151 0 1791 175 0 4 chr15 34399879 34400159 -66980362 + AluJb SINE Alu 5 283 -29 203 61 30 0 chr15 34400164 34400197 -66980324 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr15 34400725 34400746 -66979775 + AT_rich Low_complexity Low_complexity 1 21 0 926 19 0 0 chr15 34400814 34400921 -66979600 + L1PA3 LINE L1 6047 6153 -2 395 335 71 48 chr15 34401240 34401634 -66978887 + LTR16C LTR ERVL 87 489 -2 5362 244 82 26 chr15 34401634 34404695 -66975826 + L1M3e LINE L1 831 4027 -2355 209 254 55 0 chr15 34404697 34404752 -66975769 + MER5B DNA MER1_type 121 178 0 340 363 15 15 chr15 34406234 34406369 -66974152 + MIR SINE MIR 16 150 -58 600 297 59 7 chr15 34406499 34406719 -66973802 + MIR SINE MIR 15 236 -26 182 284 104 0 chr15 34407993 34408060 -66972461 + MIR SINE MIR 186 259 -3 360 253 102 11 chr15 34408406 34408592 -66971929 - L1ME2 LINE L1 -297 5867 5665 258 271 24 100 chr15 34408642 34408852 -66971669 + MER112 DNA MER1_type 67 260 0 1853 230 70 26 chr15 34408957 34409413 -66971108 - MER110 LTR ERV1 -15 476 1 372 257 126 46 chr15 34409421 34409682 -66970839 - L1ME2 LINE L1 -577 5585 5304 318 245 202 29 chr15 34409700 34409908 -66970613 - L1ME2 LINE L1 -820 5326 5083 6325 92 14 0 chr15 34409983 34410958 -66969563 + L1PB2 LINE L1 5163 6149 -2 515 249 35 29 chr15 34411276 34411449 -66969072 - MLT1H LTR MaLR -375 174 1 243 0 0 0 chr15 34411749 34411776 -66968745 + (T)n Simple_repeat Simple_repeat 1 27 0 2524 192 70 52 chr15 34412834 34413494 -66967027 + MER21B LTR ERV1 132 803 -60 497 292 57 68 chr15 34413521 34413857 -66966664 + MLT1J2 LTR MaLR 36 367 -83 2080 198 115 9 chr15 34414584 34415044 -66965477 + LTR22 LTR ERVK 1 509 0 460 306 28 52 chr15 34415071 34415594 -66964927 - L1MEd LINE L1 -870 1620 1011 184 291 0 0 chr15 34417396 34417451 -66963070 + L2 LINE L2 2592 2646 -668 25 65 0 0 chr15 34417469 34417515 -66963006 + AT_rich Low_complexity Low_complexity 1 46 0 980 209 5 14 chr15 34417854 34418065 -66962456 + MER3 DNA MER1_type 1 209 0 248 432 54 7 chr15 34418330 34418478 -66962043 + L2 LINE L2 3116 3270 -2 198 71 0 0 chr15 34419079 34419107 -66961414 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 222 91 0 0 chr15 34419169 34419202 -66961319 + (CATA)n Simple_repeat Simple_repeat 4 36 0 25 31 0 0 chr15 34419711 34419743 -66960778 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr15 34420200 34420223 -66960298 + AT_rich Low_complexity Low_complexity 1 23 0 1075 244 78 55 chr15 34422320 34422771 -66957750 + MLT1C LTR MaLR 7 467 0 388 327 129 56 chr15 34422788 34423868 -66956653 + L2 LINE L2 2006 3183 -89 2007 130 20 0 chr15 34425356 34425657 -66954864 + AluSc SINE Alu 1 307 -2 2254 99 0 0 chr15 34427569 34427852 -66952669 + AluSg SINE Alu 1 283 -27 545 64 13 0 chr15 34427852 34427930 -66952591 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 252 279 48 67 chr15 34429082 34429186 -66951335 + L3 LINE CR1 1349 1450 -127 1029 163 117 0 chr15 34429690 34429886 -66950635 - MER20 DNA MER1_type 0 219 1 698 209 46 67 chr15 34430201 34430439 -66950082 - MLT2C1 LTR ERVL -115 282 49 1813 179 31 17 chr15 34430439 34430797 -66949724 - MLT1A1 LTR MaLR 0 365 3 698 209 46 67 chr15 34430797 34430841 -66949680 - MLT2C1 LTR ERVL -348 49 6 307 150 8 5 chr15 34430912 34430974 -66949547 + MLT1A2 LTR MaLR 266 313 -61 3865 186 30 8 chr15 34431078 34431905 -66948616 + L1MB7 LINE L1 5330 6174 -10 2260 108 0 0 chr15 34432735 34433031 -66947490 - AluSg SINE Alu -14 296 1 522 0 0 0 chr15 34433783 34433841 -66946680 + (TA)n Simple_repeat Simple_repeat 2 59 0 2120 109 4 0 chr15 34433863 34434138 -66946383 - AluSq SINE Alu -37 276 1 247 161 16 16 chr15 34434283 34434345 -66946176 + CT-rich Low_complexity Low_complexity 1 62 0 187 354 127 0 chr15 34435766 34435845 -66944676 - L2 LINE L2 -2 3270 3182 280 98 0 0 chr15 34436647 34436688 -66943833 - L1P LINE L1 -1224 4922 4882 1764 212 36 0 chr15 34437054 34437169 -66943352 + L1P LINE L1 4664 4773 -1373 203 61 30 0 chr15 34437169 34437202 -66943319 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 1764 212 36 0 chr15 34437202 34437501 -66943020 + L1P LINE L1 4773 5093 -1053 300 261 11 33 chr15 34439104 34439196 -66941325 + L1MC4 LINE L1 6614 6703 -1339 311 255 82 10 chr15 34439215 34439313 -66941208 + L1MC4 LINE L1 6615 6719 -1323 315 243 35 0 chr15 34439336 34439509 -66941012 + (TA)n Simple_repeat Simple_repeat 2 180 0 303 344 137 4 chr15 34439514 34439770 -66940751 + L2 LINE L2 2467 2756 -558 200 307 59 50 chr15 34439777 34439878 -66940643 - MER5B DNA MER1_type -76 102 1 445 204 71 66 chr15 34440377 34440603 -66939918 - L1MC5 LINE L1 -37 7924 7698 716 238 174 14 chr15 34440631 34440921 -66939600 - MLT1D LTR MaLR -2 503 167 1619 138 164 52 chr15 34440921 34441156 -66939365 + MSTA LTR MaLR 1 208 -220 2302 132 22 11 chr15 34441156 34441527 -66938994 + THE1C LTR MaLR 1 375 0 1619 138 164 52 chr15 34441527 34441676 -66938845 + MSTA LTR MaLR 208 428 0 626 203 98 49 chr15 34441676 34441839 -66938682 - MLT1D LTR MaLR -334 171 1 295 157 0 0 chr15 34441850 34441901 -66938620 - L1MC5 LINE L1 -302 7659 7609 320 304 49 0 chr15 34442708 34442810 -66937711 + MIR SINE MIR 37 143 -65 729 101 0 0 chr15 34442818 34442917 -66937604 + AluS SINE Alu 1 99 -214 339 25 0 0 chr15 34445380 34445420 -66935101 + (TG)n Simple_repeat Simple_repeat 1 40 0 331 283 69 48 chr15 34445559 34445704 -66934817 - MER5A DNA MER1_type -24 165 18 22 0 0 0 chr15 34446891 34446913 -66933608 + AT_rich Low_complexity Low_complexity 1 22 0 2154 201 33 10 chr15 34447381 34447868 -66932653 - MER34 LTR ERV1 0 542 45 249 241 0 0 chr15 34447886 34447944 -66932577 - MER34C LTR ERV1 -493 92 35 2015 153 0 0 chr15 34449065 34449360 -66931161 + AluSx SINE Alu 1 295 -17 8027 181 40 40 chr15 34449639 34451394 -66929127 - MER52A LTR ERV1 0 1755 1 542 266 108 18 chr15 34451575 34451797 -66928724 - MIR SINE MIR -17 245 4 260 258 112 11 chr15 34452754 34452843 -66927678 - MER5B DNA MER1_type -80 98 1 208 148 37 19 chr15 34452919 34452973 -66927548 + (TA)n Simple_repeat Simple_repeat 2 56 0 196 290 130 20 chr15 34454483 34454583 -66925938 + MIR3 SINE MIR 59 169 -39 519 297 32 0 chr15 34455104 34455259 -66925262 + MIR SINE MIR 77 236 -26 379 115 0 0 chr15 34455664 34455725 -66924796 + Alu SINE Alu 238 298 -4 5612 121 28 3 chr15 34455863 34457105 -66923416 - L1PA14 LINE L1 -2 6159 4888 257 237 31 62 chr15 34458972 34459069 -66921452 + L3 LINE CR1 1138 1231 -346 312 91 0 0 chr15 34459080 34459124 -66921397 + (TG)n Simple_repeat Simple_repeat 1 44 0 511 335 43 35 chr15 34459185 34459415 -66921106 + L3 LINE CR1 1244 1475 -102 200 321 113 54 chr15 34460463 34460684 -66919837 + L3 LINE CR1 1251 1484 -93 615 342 98 56 chr15 34461751 34462230 -66918291 + L3 LINE CR1 1071 1569 -8 1350 173 60 49 chr15 34462443 34462481 -66918040 - THE1C LTR MaLR -2 373 337 1992 142 0 10 chr15 34462481 34462777 -66917744 + AluSg SINE Alu 1 293 -17 1350 173 60 49 chr15 34462777 34463103 -66917418 - THE1C LTR MaLR -38 337 5 1784 152 55 36 chr15 34463284 34463647 -66916874 + THE1C LTR MaLR 6 375 0 1743 309 124 20 chr15 34463650 34464618 -66915903 - L2 LINE L2 -258 3055 1990 6115 213 12 13 chr15 34464701 34466001 -66914520 + L1PA15-16 LINE L1 1 1257 -5592 12914 189 20 11 chr15 34466001 34472087 -66908434 + L1PA16 LINE L1 733 6867 -2 216 294 92 18 chr15 34473245 34473354 -66907167 + MIR SINE MIR 20 136 -72 251 314 49 29 chr15 34473803 34473905 -66906616 - L2 LINE L2 -1 3312 3209 2458 61 6 16 chr15 34474044 34474356 -66906165 + AluY SINE Alu 1 309 -2 499 231 308 0 chr15 34474393 34474549 -66905972 - MIR SINE MIR 0 262 59 1648 49 0 0 chr15 34476590 34476793 -66903728 - L1PA4 LINE L1 -3 6152 5950 31 26 0 0 chr15 34477277 34477315 -66903206 + AT_rich Low_complexity Low_complexity 1 38 0 458 265 240 39 chr15 34477371 34477463 -66903058 - MIR SINE MIR -1 261 189 387 0 0 0 chr15 34477463 34477506 -66903015 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2290 71 4 0 chr15 34477507 34477787 -66902734 - AluSq SINE Alu -32 281 1 458 265 240 39 chr15 34477787 34477896 -66902625 - MIR SINE MIR -72 190 17 368 232 56 24 chr15 34479716 34479841 -66900680 + L2 LINE L2 2375 2503 -811 349 318 9 9 chr15 34479997 34480107 -66900414 + MERVL LTR ERVL 4101 4210 -1275 1436 137 34 9 chr15 34480111 34480344 -66900177 - AluSg/x SINE Alu 0 312 74 610 329 80 46 chr15 34480348 34481189 -66899332 + MERVL LTR ERVL 4246 5114 -650 454 265 56 55 chr15 34481514 34481889 -66898632 + LTR16A LTR ERVL 10 441 -9 950 281 153 26 chr15 34481897 34482471 -66898050 + L2 LINE L2 2673 3313 0 214 191 0 0 chr15 34482792 34482834 -66897687 + T-rich Low_complexity Low_complexity 1 42 0 186 265 29 29 chr15 34483052 34483120 -66897401 - MIR SINE MIR -87 121 54 548 296 28 32 chr15 34483555 34483771 -66896750 - MIR SINE MIR -1 261 47 216 149 0 0 chr15 34483850 34483897 -66896624 + (TC)n Simple_repeat Simple_repeat 1 47 0 369 312 88 0 chr15 34484462 34484607 -66895914 - MIR SINE MIR -70 192 37 180 328 147 0 chr15 34485852 34485968 -66894553 - L2 LINE L2 -1 3312 3180 2290 95 7 0 chr15 34486588 34486893 -66893628 - AluSp SINE Alu -6 307 1 585 221 0 15 chr15 34486959 34487095 -66893426 + MLT2F LTR ERVL 1 134 -529 484 175 58 46 chr15 34487103 34487287 -66893234 + MLT1E1 LTR MaLR 52 291 -363 247 175 0 88 chr15 34487401 34487458 -66893063 + MLT2C2 LTR ERVL 343 394 -70 219 244 33 11 chr15 34487478 34487568 -66892953 + (TA)n Simple_repeat Simple_repeat 2 93 0 664 317 35 0 chr15 34488078 34488305 -66892216 - MIR SINE MIR 0 262 28 1739 176 3 17 chr15 34489317 34489607 -66890914 - AluJo SINE Alu -26 286 1 810 213 21 50 chr15 34489847 34490087 -66890434 + L1MD2 LINE L1 6044 6276 -83 186 71 0 0 chr15 34490397 34490425 -66890096 + (A)n Simple_repeat Simple_repeat 1 28 0 209 278 0 0 chr15 34491625 34491679 -66888842 + (CATA)n Simple_repeat Simple_repeat 2 55 0 349 52 0 35 chr15 34491913 34491971 -66888550 + (CA)n Simple_repeat Simple_repeat 1 56 0 217 303 110 18 chr15 34492354 34492463 -66888058 - MIR SINE MIR -17 245 127 1545 186 20 17 chr15 34493121 34493417 -66887104 + AluJo SINE Alu 1 297 -15 1120 142 44 18 chr15 34493439 34493805 -66886716 + MSTA LTR MaLR 1 422 -6 225 305 42 34 chr15 34494095 34494213 -66886308 + MLT1J2 LTR MaLR 281 399 -51 1276 162 101 10 chr15 34494775 34495071 -66885450 - MER33 DNA MER1_type -1 323 1 239 246 0 15 chr15 34495405 34495470 -66885051 + (TG)n Simple_repeat Simple_repeat 1 64 0 246 310 149 40 chr15 34495530 34495704 -66884817 + MIR SINE MIR 38 230 -32 211 374 38 15 chr15 34495714 34495845 -66884676 - L2 LINE L2 -498 2816 2683 213 39 0 0 chr15 34497149 34497175 -66883346 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr15 34497704 34497727 -66882794 + AT_rich Low_complexity Low_complexity 1 23 0 3809 155 41 0 chr15 34499750 34500458 -66880063 + L1MA9 LINE L1 5571 6307 -5 423 339 17 17 chr15 34502310 34502487 -66878034 - MIR SINE MIR -73 189 13 1910 192 120 5 chr15 34502504 34502947 -66877574 - MLT1D LTR MaLR 0 505 12 783 286 64 31 chr15 34503487 34503878 -66876643 + MLT1I LTR MaLR 3 406 -3 1751 189 3 10 chr15 34504337 34504638 -66875883 - AluJb SINE Alu -13 299 1 2231 103 0 10 chr15 34506007 34506308 -66874213 + AluSc SINE Alu 1 298 -11 2476 51 0 29 chr15 34509787 34510101 -66870420 + AluY SINE Alu 1 305 -6 324 252 150 20 chr15 34511152 34511639 -66868882 + L1ME4a LINE L1 5494 6096 -25 269 153 0 17 chr15 34511796 34511855 -66868666 + (TA)n Simple_repeat Simple_repeat 1 58 0 2648 135 23 61 chr15 34511963 34512490 -66868031 - L1MC1 LINE L1 0 6333 5827 1914 224 42 22 chr15 34512490 34513414 -66867107 - L1M4 LINE L1 -3435 2535 1590 3255 229 27 33 chr15 34513443 34514493 -66866028 - L1M4 LINE L1 -4535 1437 395 1229 226 52 15 chr15 34514495 34514823 -66865698 - MLT1A1 LTR MaLR -12 353 14 304 297 9 18 chr15 34514864 34514975 -66865546 - L1M3c LINE L1 -5117 1024 915 409 345 41 41 chr15 34515068 34515433 -66865088 - L1M4 LINE L1 -5526 365 1 2347 192 19 0 chr15 34515439 34515913 -66864608 - L1MC/D LINE L1 -513 5820 5338 230 213 0 21 chr15 34519543 34519590 -66860931 - L2 LINE L2 -73 3240 3195 198 286 204 10 chr15 34519928 34520026 -66860495 + MIR SINE MIR 19 135 -73 472 260 0 57 chr15 34520071 34520194 -66860327 - L2 LINE L2 -1 3312 3197 470 207 0 99 chr15 34521279 34521400 -66859121 + L2 LINE L2 3201 3309 -4 512 228 325 5 chr15 34521421 34521618 -66858903 - MIR SINE MIR -1 261 2 47 33 0 0 chr15 34521669 34521730 -66858791 + AT_rich Low_complexity Low_complexity 1 61 0 926 266 13 26 chr15 34521848 34522081 -66858440 + MIR SINE MIR 33 262 0 191 35 0 35 chr15 34522764 34522793 -66857728 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 235 150 0 0 chr15 34524198 34524238 -66856283 - LTR67 LTR ERVL 0 557 518 371 323 172 16 chr15 34524247 34524439 -66856082 + MIR SINE MIR 21 242 -20 363 154 0 0 chr15 34524446 34524511 -66856010 + (CAT)n Simple_repeat Simple_repeat 1 65 0 806 341 108 10 chr15 34525045 34525687 -66854834 + L2 LINE L2 2355 3054 -218 4060 210 131 10 chr15 34526611 34527907 -66852614 - Charlie1 DNA MER1_type -6 2755 1 22 0 0 0 chr15 34528061 34528083 -66852438 + AT_rich Low_complexity Low_complexity 1 22 0 210 207 256 12 chr15 34529905 34529987 -66850534 - MIR3 SINE MIR -4 204 103 246 268 89 94 chr15 34532651 34532886 -66847635 + L2 LINE L2 3025 3258 -55 234 325 111 8 chr15 34533774 34533900 -66846621 + MIR SINE MIR 68 206 -56 309 290 53 0 chr15 34534233 34534364 -66846157 - L1MC4a LINE L1 -1879 5929 5792 342 355 36 24 chr15 34534931 34535097 -66845424 - MIR SINE MIR -72 190 23 490 278 101 35 chr15 34537599 34537937 -66842584 + LTR33 LTR ERVL 3 362 -159 754 206 0 0 chr15 34538143 34538274 -66842247 - FLAM_C SINE Alu -2 131 1 26 30 0 0 chr15 34538349 34538382 -66842139 + AT_rich Low_complexity Low_complexity 1 33 0 537 293 63 0 chr15 34538497 34538671 -66841850 - MIR SINE MIR -26 236 52 289 182 0 0 chr15 34540363 34540407 -66840114 - L2 LINE L2 -19 3294 3251 276 288 89 48 chr15 34540452 34540598 -66839923 + MIR SINE MIR 60 211 -51 2063 223 72 2 chr15 34540598 34541180 -66839341 - L1ME3A LINE L1 0 6170 5548 435 249 48 79 chr15 34541628 34541793 -66838728 - MIR3 SINE MIR -14 194 35 188 229 21 0 chr15 34542293 34542341 -66838180 + L2 LINE L2 3265 3313 0 238 161 0 89 chr15 34542482 34542538 -66837983 - MER5B DNA MER1_type -127 51 1 24 0 0 0 chr15 34542575 34542599 -66837922 + AT_rich Low_complexity Low_complexity 1 24 0 778 239 40 21 chr15 34543439 34543670 -66836851 + MIR SINE MIR 19 261 -1 818 264 14 9 chr15 34546269 34546485 -66834036 + MER20 DNA MER1_type 2 218 -1 2556 60 0 13 chr15 34547945 34548260 -66832261 + AluY SINE Alu 1 311 0 316 275 0 12 chr15 34550456 34550536 -66829985 - MIR SINE MIR -169 93 15 2071 165 135 5 chr15 34550543 34550986 -66829535 - MLT1D LTR MaLR -2 503 3 580 211 12 12 chr15 34552239 34552400 -66828121 - Charlie4a DNA MER1_type -8 500 340 759 264 77 0 chr15 34552570 34552843 -66827678 - Charlie4a DNA MER1_type -178 330 37 683 137 51 0 chr15 34553190 34553386 -66827135 + L1PA16 LINE L1 5926 6166 0 270 301 136 0 chr15 34553442 34553545 -66826976 + L2 LINE L2 3195 3311 -2 627 209 27 120 chr15 34554171 34554430 -66826091 - MER112 DNA MER1_type -7 253 19 181 355 84 9 chr15 34555179 34555286 -66825235 + L3b LINE CR1 1336 1450 -133 23 68 0 0 chr15 34555448 34555492 -66825029 + AT_rich Low_complexity Low_complexity 1 44 0 183 189 0 0 chr15 34557115 34557152 -66823369 + L2 LINE L2 3277 3313 0 1679 189 76 70 chr15 34557624 34558136 -66822385 + MLT2B1 LTR ERVL 1 515 -5 2064 212 37 6 chr15 34558138 34558628 -66821893 + MLT-int LTR MaLR 1 505 -1230 297 235 25 0 chr15 34558645 34558726 -66821795 + MLT-int LTR MaLR 676 758 -977 201 393 89 0 chr15 34559052 34559164 -66821357 - L2 LINE L2 0 3272 3151 371 352 56 20 chr15 34559482 34559678 -66820843 + MIR SINE MIR 12 214 -48 892 131 12 48 chr15 34560060 34560228 -66820293 + MLT2B1 LTR ERVL 106 267 -253 385 253 0 12 chr15 34560366 34560536 -66819985 + (TA)n Simple_repeat Simple_repeat 2 169 0 207 0 0 0 chr15 34560560 34560583 -66819938 + (TG)n Simple_repeat Simple_repeat 2 24 0 318 281 0 21 chr15 34560583 34560679 -66819842 + L1MC4 LINE L1 6614 6707 -1335 385 314 33 16 chr15 34560731 34560852 -66819669 + L2 LINE L2 3136 3258 -14 378 61 0 0 chr15 34561206 34561255 -66819266 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 210 43 22 43 chr15 34562980 34563026 -66817495 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 182 333 13 13 chr15 34563253 34563331 -66817190 + L2 LINE L2 3223 3300 -13 2183 123 0 3 chr15 34563601 34563903 -66816618 + AluJb SINE Alu 3 303 -9 387 255 80 22 chr15 34565167 34565333 -66815188 + MIR SINE MIR 7 180 -62 284 249 41 66 chr15 34565883 34566074 -66814447 + LTR41 LTR ERVL 578 768 -5 180 97 0 0 chr15 34566583 34566614 -66813907 + (T)n Simple_repeat Simple_repeat 1 31 0 2325 87 3 0 chr15 34566696 34566983 -66813538 - AluSp SINE Alu -25 288 1 253 310 69 44 chr15 34567072 34567248 -66813273 - MIR3 SINE MIR -63 145 8 412 339 77 15 chr15 34567301 34567496 -66813025 - MIR SINE MIR -15 247 41 7167 152 6 8 chr15 34567874 34570506 -66810015 + L1MA2 LINE L1 3675 6301 -3 3261 249 73 37 chr15 34570568 34571998 -66808523 + L1MEc LINE L1 1808 3269 -2946 22013 29 0 0 chr15 34571998 34575439 -66805082 + L1PA3 LINE L1 2702 6150 -5 3261 249 73 37 chr15 34575439 34575763 -66804758 + L1MEc LINE L1 3269 3580 -2635 903 298 113 45 chr15 34575883 34575949 -66804572 + LTR33 LTR ERVL 1 61 -460 1989 110 0 0 chr15 34575949 34576212 -66804309 + AluSg SINE Alu 32 294 -16 903 298 113 45 chr15 34576212 34576631 -66803890 + LTR33 LTR ERVL 61 519 -2 1314 185 0 9 chr15 34576935 34577157 -66803364 + AluJo SINE Alu 84 303 -9 509 117 84 206 chr15 34577271 34577484 -66803037 - MER21B LTR ERV1 -6 925 665 2413 107 13 24 chr15 34577484 34577857 -66802664 + THE1C LTR MaLR 1 369 -6 2785 197 89 21 chr15 34577891 34578496 -66802025 - MER21B LTR ERV1 -199 664 19 454 228 0 22 chr15 34578518 34578610 -66801911 - MER21B LTR ERV1 -773 90 1 33 0 0 42 chr15 34578913 34578939 -66801582 + AT_rich Low_complexity Low_complexity 1 26 -20 2961 3 0 0 chr15 34578939 34579257 -66801264 + AluYb8 SINE Alu 1 318 0 33 0 0 42 chr15 34579257 34579278 -66801243 + AT_rich Low_complexity Low_complexity 26 46 0 33 0 0 0 chr15 34579830 34579863 -66800658 + AT_rich Low_complexity Low_complexity 1 33 0 861 249 41 0 chr15 34580071 34580268 -66800253 + MLT1A1 LTR MaLR 161 365 0 289 248 134 97 chr15 34580336 34580660 -66799861 + L1ME LINE L1 5494 5823 -298 291 303 0 0 chr15 34581008 34581074 -66799447 + L2 LINE L2 3205 3270 -2 1451 223 0 11 chr15 34582292 34582574 -66797947 - AluJo SINE Alu -30 282 4 637 112 31 0 chr15 34583934 34584032 -66796489 + MER67A LTR ERV1 1 101 -442 387 0 0 0 chr15 34584082 34584125 -66796396 + (CA)n Simple_repeat Simple_repeat 1 43 0 1209 199 31 68 chr15 34584134 34584460 -66796061 + MER67A LTR ERV1 99 412 -131 4149 55 4 0 chr15 34584465 34584990 -66795531 + L1PA7 LINE L1 5627 6153 -1 1040 95 65 6 chr15 34584990 34585158 -66795363 + L1MA3 LINE L1 6128 6305 0 780 188 7 0 chr15 34585183 34585321 -66795200 + MER67A LTR ERV1 405 543 0 1983 154 133 18 chr15 34586454 34586838 -66793683 + MSTA LTR MaLR 1 428 0 206 295 84 21 chr15 34587557 34587652 -66792869 + MIR SINE MIR 26 126 -136 238 271 186 8 chr15 34587714 34587843 -66792678 + MIR SINE MIR 110 261 -1 1229 121 6 9 chr15 34587903 34588210 -66792311 + THE1C LTR MaLR 1 374 -1 208 150 25 0 chr15 34588695 34588735 -66791786 + GA-rich Low_complexity Low_complexity 2 42 0 231 206 33 11 chr15 34589090 34589182 -66791339 + (TAA)n Simple_repeat Simple_repeat 1 94 0 22 0 0 0 chr15 34591128 34591150 -66789371 + AT_rich Low_complexity Low_complexity 1 22 0 1929 168 19 3 chr15 34592086 34592462 -66788059 - L1MB3 LINE L1 -2 6181 5800 551 292 17 11 chr15 34592491 34592669 -66787852 + MIR SINE MIR 65 243 -19 207 250 0 0 chr15 34592683 34592727 -66787794 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1904 65 4 0 chr15 34592777 34593025 -66787496 - L1PA4 LINE L1 -3 6152 5904 827 31 0 0 chr15 34593025 34593121 -66787400 + L1PA4 LINE L1 5801 5896 -259 1899 179 11 22 chr15 34594013 34594382 -66786139 - MLT1A1 LTR MaLR 0 365 1 203 318 0 30 chr15 34594912 34594978 -66785543 - MIR SINE MIR -68 140 77 189 227 15 76 chr15 34596671 34596737 -66783784 + L2 LINE L2 3028 3089 -183 665 213 137 13 chr15 34597023 34597385 -66783136 - MLT1E3 LTR MaLR 0 624 138 362 302 43 43 chr15 34598143 34598259 -66782262 + L2 LINE L2 3157 3272 0 398 264 103 50 chr15 34598359 34598620 -66781901 + L1ME4a LINE L1 5807 6081 -40 356 341 76 8 chr15 34600255 34600387 -66780134 - MIR SINE MIR -85 177 37 202 237 68 0 chr15 34600558 34600617 -66779904 + CT-rich Low_complexity Low_complexity 4 66 0 268 333 15 30 chr15 34600737 34600869 -66779652 + L2 LINE L2 2851 2980 -292 1721 191 58 43 chr15 34600876 34601362 -66779159 - Charlie1b DNA MER1_type 0 523 31 239 322 144 0 chr15 34601545 34601635 -66778886 + L2 LINE L2 3165 3267 -5 490 222 37 9 chr15 34601894 34602002 -66778519 - L2 LINE L2 -6 3307 3197 347 324 101 14 chr15 34602054 34602193 -66778328 + MIR SINE MIR 100 250 -12 247 293 61 50 chr15 34604365 34604464 -66776057 - L2 LINE L2 -19 3294 3195 275 280 229 11 chr15 34604760 34604935 -66775586 - L3 LINE CR1 -909 668 456 1786 179 8 14 chr15 34605205 34605557 -66774964 - L1MA7 LINE L1 -310 5981 5632 1240 178 43 26 chr15 34605557 34605858 -66774663 + L1MA7 LINE L1 5984 6291 0 1143 177 47 115 chr15 34606253 34606654 -66773867 + MLT1A2 LTR MaLR 1 374 0 918 154 37 0 chr15 34607274 34607436 -66773085 - L1PA10 LINE L1 -3 6165 5998 21 36 0 0 chr15 34607583 34607611 -66772910 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr15 34608199 34608231 -66772290 + AT_rich Low_complexity Low_complexity 1 32 0 14450 31 0 0 chr15 34608345 34610901 -66769620 + L1PA3 LINE L1 3652 6155 0 457 226 41 87 chr15 34611163 34611358 -66769163 + L2 LINE L2 3128 3313 0 225 132 0 0 chr15 34611628 34611666 -66768855 + (TG)n Simple_repeat Simple_repeat 2 39 0 808 234 68 10 chr15 34611830 34612022 -66768499 - MLT1B LTR MaLR 0 390 188 358 127 28 0 chr15 34612023 34612094 -66768427 + GA-rich Low_complexity Low_complexity 2 74 0 601 248 75 0 chr15 34612112 34612273 -66768248 - MLT1B LTR MaLR -217 173 1 10515 65 25 1 chr15 34612786 34614931 -66765590 + L1PA6 LINE L1 3973 6139 -15 265 224 0 82 chr15 34614950 34615048 -66765473 + L1MC4 LINE L1 6614 6703 -1339 212 292 79 0 chr15 34615588 34615677 -66764844 + L2 LINE L2 3169 3264 -49 875 253 82 69 chr15 34615905 34616284 -66764237 + MLT1J LTR MaLR 117 500 -11 602 244 0 0 chr15 34616389 34616512 -66764009 + MER5C DNA MER1_type 2 124 -200 4801 60 0 0 chr15 34618952 34619554 -66760967 + L1PA5 LINE L1 5553 6154 0 557 242 132 6 chr15 34619772 34619954 -66760567 + MER5C DNA MER1_type 118 322 -2 323 270 31 38 chr15 34620234 34620393 -66760128 - Charlie8 DNA MER1_type -2234 183 26 187 400 32 26 chr15 34621764 34621919 -66758602 + L2 LINE L2 3097 3252 -20 443 264 222 0 chr15 34622312 34622456 -66758065 + MER5A DNA MER1_type 13 188 -1 491 222 0 67 chr15 34625331 34625466 -66755055 - MER5B DNA MER1_type -52 126 1 1867 189 0 3 chr15 34625564 34625870 -66754651 + AluJb SINE Alu 1 305 -7 329 325 89 18 chr15 34627708 34627877 -66752644 + L1M4 LINE L1 716 896 -5646 683 280 4 33 chr15 34627934 34628209 -66752312 + L1M4 LINE L1 912 1178 -5368 307 331 55 21 chr15 34628222 34628367 -66752154 + L1M4 LINE L1 1439 1588 -5058 601 270 77 69 chr15 34628558 34628996 -66751525 + L1M4 LINE L1 2033 2466 -4359 2416 132 70 2 chr15 34628996 34629397 -66751124 + MSTA LTR MaLR 1 428 0 2181 156 5 16 chr15 34629406 34629784 -66750737 - THE1C LTR MaLR 0 375 2 561 88 0 0 chr15 34629784 34629864 -66750657 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 601 270 77 69 chr15 34629864 34629936 -66750585 + L1M4 LINE L1 2472 2558 -4267 1998 55 0 27 chr15 34629939 34630196 -66750325 + AluY SINE Alu 44 293 -18 827 166 108 25 chr15 34630212 34630456 -66750065 + L1ME2 LINE L1 5236 5500 -662 1338 172 54 54 chr15 34630457 34630789 -66749732 + L1ME2 LINE L1 5615 5946 -216 325 71 107 0 chr15 34630791 34630847 -66749674 + L1MA2 LINE L1 6239 6300 -4 326 226 43 70 chr15 34630892 34631007 -66749514 + L1ME2 LINE L1 5937 6048 -116 2241 118 3 3 chr15 34631655 34631961 -66748560 + AluSx SINE Alu 3 308 -4 5869 48 0 0 chr15 34632472 34633186 -66747335 - L1PA5 LINE L1 0 6154 5441 4626 59 0 0 chr15 34633186 34633815 -66746706 + L1P LINE L1 4720 5348 -798 545 279 186 23 chr15 34633834 34634221 -66746300 - LTR16A LTR ERVL 0 450 1 22 0 0 0 chr15 34635624 34635646 -66744875 + AT_rich Low_complexity Low_complexity 1 22 0 759 73 0 9 chr15 34639558 34639668 -66740853 + L1PB1 LINE L1 5682 5790 -361 369 188 0 0 chr15 34639671 34639751 -66740770 + (TA)n Simple_repeat Simple_repeat 1 80 0 2383 89 21 0 chr15 34639766 34640128 -66740393 + L1PB1 LINE L1 5783 6151 0 505 291 97 67 chr15 34640209 34640870 -66739651 + L1ME4a LINE L1 4525 5205 -941 305 313 206 28 chr15 34641121 34641520 -66739001 + L1ME4a LINE L1 5454 5923 -198 273 75 0 0 chr15 34641520 34641560 -66738961 + (CA)n Simple_repeat Simple_repeat 1 40 0 24 53 0 0 chr15 34641709 34641747 -66738774 + AT_rich Low_complexity Low_complexity 1 38 0 369 282 48 0 chr15 34642402 34642505 -66738016 + MIR SINE MIR 79 186 -76 9342 166 19 17 chr15 34642817 34644500 -66736021 - L1PA13 LINE L1 -14 6149 4438 1830 133 0 0 chr15 34644500 34644755 -66735766 - AluSx SINE Alu -17 295 41 9342 166 19 17 chr15 34644755 34645671 -66734850 - L1PA13 LINE L1 -1725 4438 3526 2318 96 0 3 chr15 34646391 34646694 -66733827 + AluSq SINE Alu 1 302 -11 1790 216 37 28 chr15 34646836 34647299 -66733222 - MLT1C LTR MaLR 0 467 1 524 341 59 0 chr15 34647299 34647469 -66733052 + MIR SINE MIR 77 256 -6 373 217 22 22 chr15 34651406 34651498 -66729023 + MER103 DNA DNA 32 123 -43 640 311 145 3 chr15 34654510 34654861 -66725660 - L2 LINE L2 -1 3312 2912 212 319 11 22 chr15 34654916 34655007 -66725514 - L2 LINE L2 -516 2798 2709 214 297 20 40 chr15 34655764 34655865 -66724656 - MIR SINE MIR -97 165 67 9648 151 37 4 chr15 34656933 34659614 -66720907 - L1MA8 LINE L1 -4 6287 3519 215 353 39 29 chr15 34660357 34660459 -66720062 + MIR SINE MIR 38 140 -122 763 260 39 26 chr15 34660546 34660777 -66719744 + L2 LINE L2 1906 2139 -1175 706 293 62 18 chr15 34661478 34661703 -66718818 - MIR SINE MIR -6 256 22 2153 113 3 10 chr15 34662088 34662390 -66718131 - AluSg SINE Alu -10 300 1 22 0 0 0 chr15 34663185 34663207 -66717314 + AT_rich Low_complexity Low_complexity 1 22 0 330 24 0 0 chr15 34663411 34663452 -66717069 - U2 snRNA snRNA -130 58 18 4955 52 27 2 chr15 34663452 34664082 -66716439 + L1PA7 LINE L1 5503 6148 -6 22 0 0 0 chr15 34664082 34664104 -66716417 + AT_rich Low_complexity Low_complexity 1 22 0 395 299 26 0 chr15 34664597 34664714 -66715807 + MER91A DNA MER1_type 35 154 -42 433 240 30 0 chr15 34665660 34665760 -66714761 + MER58 DNA MER1_type 4 106 -109 287 365 19 39 chr15 34666680 34666836 -66713685 + MER5A DNA MER1_type 1 153 -36 2003 159 0 0 chr15 34668594 34668890 -66711631 + AluSx SINE Alu 1 296 -16 216 213 43 0 chr15 34669006 34669053 -66711468 + C-rich Low_complexity Low_complexity 2 50 0 227 323 21 85 chr15 34670324 34670491 -66710030 - MIR3 SINE MIR -43 165 16 1766 191 20 0 chr15 34670822 34671126 -66709395 + AluJb SINE Alu 1 310 -2 1702 183 60 71 chr15 34671240 34671677 -66708844 + MSTB1 LTR MaLR 1 432 0 2509 45 0 38 chr15 34672576 34672890 -66707631 - AluY SINE Alu -9 302 1 46 19 0 0 chr15 34673736 34673789 -66706732 + AT_rich Low_complexity Low_complexity 1 53 0 60 37 0 0 chr15 34674319 34674400 -66706121 + AT_rich Low_complexity Low_complexity 1 81 0 24 53 0 0 chr15 34674493 34674531 -66705990 + AT_rich Low_complexity Low_complexity 1 38 0 590 304 35 22 chr15 34674827 34675057 -66705464 + MIR SINE MIR 30 262 0 2022 105 0 41 chr15 34676170 34676491 -66704030 - AluSq SINE Alu 0 309 1 24 0 0 0 chr15 34676754 34676778 -66703743 + AT_rich Low_complexity Low_complexity 1 24 0 308 328 70 8 chr15 34680211 34680339 -66700182 + MIR3 SINE MIR 2 137 -71 313 316 8 53 chr15 34680416 34680549 -66699972 - L2 LINE L2 0 3313 3187 710 146 56 49 chr15 34680574 34680718 -66699803 - MSTB1 LTR MaLR 0 432 288 905 206 0 0 chr15 34680718 34680883 -66699638 - AluJb SINE Alu -18 294 130 440 261 0 27 chr15 34681002 34681113 -66699408 - MLT1J1 LTR MaLR -336 110 3 523 355 30 4 chr15 34681568 34681802 -66698719 + MER102b DNA MER1_type 102 341 0 190 219 73 0 chr15 34681989 34682030 -66698491 + L2 LINE L2 3209 3252 -20 287 286 216 44 chr15 34683109 34683424 -66697097 - L2 LINE L2 0 3313 2945 672 163 0 0 chr15 34684781 34684934 -66695587 + (TG)n Simple_repeat Simple_repeat 2 154 0 2238 102 14 3 chr15 34685493 34685787 -66694734 - AluSq SINE Alu -16 297 1 2058 124 3 10 chr15 34686824 34687123 -66693398 - AluSx SINE Alu -15 297 1 182 240 147 13 chr15 34687373 34687448 -66693073 + MIR SINE MIR 45 129 -79 283 238 16 16 chr15 34688305 34688368 -66692153 + MER81 DNA DNA 40 102 -12 188 333 0 14 chr15 34690427 34690496 -66690025 - L2 LINE L2 -66 3206 3139 357 325 112 41 chr15 34690719 34691014 -66689507 - L2 LINE L2 -358 2956 2641 360 271 131 32 chr15 34691206 34691427 -66689094 - MIR SINE MIR -2 260 18 186 43 0 0 chr15 34691544 34691567 -66688954 + (CA)n Simple_repeat Simple_repeat 2 24 0 397 301 42 14 chr15 34691724 34691867 -66688654 - MIR SINE MIR -19 243 97 31 0 0 0 chr15 34691867 34691898 -66688623 + AT_rich Low_complexity Low_complexity 1 31 0 221 250 58 0 chr15 34692991 34693043 -66687478 - L2 LINE L2 -24 3289 3235 268 373 10 10 chr15 34693640 34693742 -66686779 + MER5A DNA MER1_type 85 186 -3 1523 282 113 16 chr15 34694080 34694892 -66685629 - L1M4 LINE L1 -1604 4542 3652 185 259 19 37 chr15 34695606 34695660 -66684861 + L2 LINE L2 3220 3272 0 647 264 83 46 chr15 34695698 34695914 -66684607 + MER58A DNA MER1_type 1 224 0 2106 128 3 0 chr15 34697242 34697540 -66682981 + AluSx SINE Alu 1 299 -13 1145 210 107 31 chr15 34698001 34698069 -66682452 - MER2 DNA MER2_type -1 343 282 1923 153 3 0 chr15 34698069 34698364 -66682157 + AluSq SINE Alu 1 296 -17 1145 210 107 31 chr15 34698364 34698614 -66681907 - MER2 DNA MER2_type -62 282 1 400 306 79 108 chr15 34698753 34699233 -66681288 + L1MC4a LINE L1 5507 5972 -1836 1697 194 56 28 chr15 34700738 34701093 -66679428 - MLT1A1 LTR MaLR 0 365 1 187 430 32 0 chr15 34701486 34701642 -66678879 + L2 LINE L2 3111 3271 -1 1714 179 14 14 chr15 34702720 34703017 -66677504 - AluSx SINE Alu -15 297 1 555 126 58 10 chr15 34703215 34703318 -66677203 + L1MB4 LINE L1 6071 6178 -2 464 304 34 125 chr15 34703433 34703881 -66676640 - L2 LINE L2 0 3272 2866 2132 108 3 3 chr15 34703956 34704243 -66676278 + AluSx SINE Alu 13 299 -13 228 360 23 0 chr15 34705331 34705417 -66675104 - MIR3 SINE MIR -26 182 95 277 260 0 27 chr15 34705894 34705967 -66674554 - HAL1 LINE L1 -363 2144 2074 282 330 55 45 chr15 34706404 34706507 -66674014 + MIR SINE MIR 21 126 -93 2456 158 64 10 chr15 34706507 34706913 -66673608 + MSTA LTR MaLR 1 428 0 282 330 55 45 chr15 34706913 34706943 -66673578 + MIR SINE MIR 126 154 -65 417 272 68 16 chr15 34708217 34708374 -66672147 + MIR SINE MIR 21 184 -67 411 283 102 48 chr15 34710127 34710355 -66670166 - L1MEd LINE L1 -4886 1233 1019 711 242 75 0 chr15 34710355 34710516 -66670005 + MER96 DNA MER1_type 1 173 -2 411 283 102 48 chr15 34710516 34710828 -66669693 - L1MEd LINE L1 -5100 1019 664 357 43 0 0 chr15 34711218 34711265 -66669256 + (TG)n Simple_repeat Simple_repeat 2 48 0 232 226 16 16 chr15 34711274 34711336 -66669185 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 3207 195 59 19 chr15 34711400 34712197 -66668324 + L1MC4 LINE L1 7005 7898 -144 948 180 57 21 chr15 34712199 34712393 -66668128 + MER106A DNA MER1_type 34 234 -2 186 103 0 0 chr15 34712673 34712702 -66667819 + (TG)n Simple_repeat Simple_repeat 2 30 0 2054 119 3 14 chr15 34712986 34713280 -66667241 + AluSg SINE Alu 1 291 -19 198 114 29 0 chr15 34713355 34713390 -66667131 - MIR SINE MIR -12 250 215 196 204 20 41 chr15 34713390 34713404 -66667117 - L2 LINE L2 -18 3254 3207 472 246 63 0 chr15 34715606 34715732 -66664789 - MER94 DNA DNA 0 134 1 1893 160 0 7 chr15 34719284 34719572 -66660949 + AluJb SINE Alu 1 286 -26 500 233 68 34 chr15 34719864 34720070 -66660451 + L1MEd LINE L1 973 1185 -4934 2687 129 51 7 chr15 34720070 34720480 -66660041 - MSTA LTR MaLR 0 428 1 4775 142 19 12 chr15 34720480 34721234 -66659287 - MSTA-int LTR MaLR 0 1651 893 4209 98 5 5 chr15 34721273 34721852 -66658669 - MER11C LTR ERVK -14 1057 479 458 285 125 56 chr15 34821855 34822380 -66558141 - L1M4 LINE L1 -1205 3815 1203 1675 147 0 15 chr15 34822477 34822749 -66557772 + AluSg SINE Alu 3 270 -40 248 313 0 21 chr15 34822898 34822994 -66557527 + MIR SINE MIR 102 195 -67 180 0 0 0 chr15 34823000 34823020 -66557501 + (T)n Simple_repeat Simple_repeat 1 20 0 283 341 22 0 chr15 34824711 34824802 -66555719 + MIR3 SINE MIR 109 201 -7 191 310 17 0 chr15 34824943 34825001 -66555520 + MIR SINE MIR 32 90 -118 2262 109 0 3 chr15 34825686 34825990 -66554531 + AluY SINE Alu 1 303 -8 528 144 31 21 chr15 34825990 34826087 -66554434 - U6 snRNA snRNA -8 99 2 1795 163 3 10 chr15 34826147 34826447 -66554074 + AluJb SINE Alu 1 298 -14 2132 119 16 23 chr15 34826483 34826793 -66553728 - AluJb SINE Alu -4 308 1 413 284 84 26 chr15 34826901 34827056 -66553465 - MIR3 SINE MIR -31 177 14 1614 131 142 4 chr15 34829908 34830182 -66550339 - AluJb SINE Alu 0 312 1 571 180 99 0 chr15 34831185 34831329 -66549192 - MIR SINE MIR -10 252 93 373 261 23 39 chr15 34831888 34832018 -66548503 - MER94 DNA DNA 0 134 7 1172 200 5 9 chr15 34837217 34837432 -66543089 - AluJb SINE Alu -98 214 1 2269 105 0 10 chr15 34837452 34837757 -66542764 - AluSc SINE Alu -7 302 1 430 255 9 19 chr15 34837762 34837868 -66542653 - MIR SINE MIR -110 152 48 2292 101 0 7 chr15 34840340 34840648 -66539873 - AluSq SINE Alu -5 308 3 485 250 75 118 chr15 34841042 34841401 -66539120 - L1ME3A LINE L1 -169 6001 5659 1205 174 53 0 chr15 34841401 34841608 -66538913 - MER20 DNA MER1_type 0 219 2 485 250 75 118 chr15 34841608 34841648 -66538873 - L1ME3A LINE L1 -511 5659 5619 897 163 13 26 chr15 34841905 34842113 -66538408 - AluJb SINE Alu 0 338 133 261 271 28 55 chr15 34842213 34842394 -66538127 + C-rich Low_complexity Low_complexity 5 180 0 1311 223 11 14 chr15 34842749 34843036 -66537485 - AluSg SINE Alu -14 286 1 2372 65 0 13 chr15 34843043 34843353 -66537168 - AluY SINE Alu -5 306 1 1423 224 0 14 chr15 34843353 34843639 -66536882 - AluJo SINE Alu -30 282 1 757 216 0 0 chr15 34843645 34843770 -66536751 - FLAM_C SINE Alu -7 126 2 1886 162 3 13 chr15 34843823 34844132 -66536389 - AluJb SINE Alu -6 306 1 2114 114 41 0 chr15 34845095 34845385 -66535136 + AluSx SINE Alu 1 302 -10 1992 140 3 0 chr15 34848268 34848602 -66531919 + AluSq SINE Alu 1 313 0 2328 119 0 16 chr15 34849158 34849295 -66531226 + AluSq SINE Alu 1 139 -174 2271 108 0 25 chr15 34849295 34849611 -66530910 + AluSq SINE Alu 1 308 -5 2328 119 0 16 chr15 34849611 34849791 -66530730 + AluSq SINE Alu 139 313 0 267 281 0 0 chr15 34849795 34849884 -66530637 + L1MC4 LINE L1 6614 6702 -1340 330 330 10 0 chr15 34849885 34849988 -66530533 + (CATATA)n Simple_repeat Simple_repeat 6 109 0 294 179 0 0 chr15 34849988 34850044 -66530477 + (TG)n Simple_repeat Simple_repeat 2 57 0 1232 252 38 64 chr15 34850250 34850336 -66530185 - L1MC/D LINE L1 -2051 5757 5670 1628 167 6 62 chr15 34850336 34850660 -66529861 + AluJo SINE Alu 1 306 -6 1232 252 38 64 chr15 34850660 34850720 -66529801 - L1MC/D LINE L1 -2138 5670 5610 2434 81 0 0 chr15 34850720 34851017 -66529504 + AluY SINE Alu 1 297 -14 1232 252 38 64 chr15 34851017 34851293 -66529228 - L1MC/D LINE L1 -2198 5610 5345 707 217 24 24 chr15 34851299 34851465 -66529056 - FRAM SINE Alu 0 166 1 1035 124 12 6 chr15 34851594 34851763 -66528758 - L1MB5 LINE L1 0 6174 6005 544 29 0 0 chr15 34851763 34851832 -66528689 + MER41A LTR ERV1 400 468 -86 1538 152 0 0 chr15 34851848 34852105 -66528416 - L1MB5 LINE L1 -156 6018 5762 1789 164 37 17 chr15 34852115 34852414 -66528107 - AluJo SINE Alu -7 305 1 1650 151 13 51 chr15 34852447 34852758 -66527763 - AluJo SINE Alu 0 312 14 362 248 48 29 chr15 34854685 34854790 -66525731 - MIR SINE MIR 0 262 156 1092 223 103 13 chr15 34854790 34855090 -66525431 + MER46C DNA MER2_type 1 327 -11 646 247 135 46 chr15 34855092 34855558 -66524963 - MLT1F LTR MaLR -1 541 1 370 280 160 8 chr15 34855585 34855710 -66524811 - MIR SINE MIR -118 144 1 399 121 0 52 chr15 34855831 34855924 -66524597 - L1MB2 LINE L1 -16 6167 6068 297 221 45 162 chr15 34858829 34858983 -66521538 + MIR SINE MIR 34 169 -93 210 284 30 15 chr15 34859976 34860043 -66520478 + GA-rich Low_complexity Low_complexity 5 72 0 1867 157 26 26 chr15 34860799 34861105 -66519416 - AluJb SINE Alu -6 306 1 771 150 0 17 chr15 34862082 34862202 -66518319 + AluJo SINE Alu 19 136 -176 2246 130 0 3 chr15 34865042 34865341 -66515180 + AluSx SINE Alu 1 298 -14 740 222 25 6 chr15 34866447 34866609 -66513912 + MIR3 SINE MIR 33 197 -11 1964 169 0 0 chr15 34866609 34866905 -66513616 + AluJo SINE Alu 1 296 -16 1450 172 3 52 chr15 34873519 34873810 -66506711 - AluY SINE Alu -7 304 28 1140 87 0 0 chr15 34874023 34874161 -66506360 - AluY SINE Alu -173 138 1 2205 102 17 0 chr15 34874283 34874578 -66505943 + AluSx SINE Alu 1 300 -12 1214 117 16 11 chr15 34875440 34875628 -66504893 + AluSq SINE Alu 109 297 -16 2100 111 3 0 chr15 34875889 34876187 -66504334 - AluSp SINE Alu -14 299 1 207 0 0 0 chr15 34876977 34877000 -66503521 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 14821 31 0 0 chr15 34877062 34879568 -66500953 - L1PA3 LINE L1 0 6155 3648 23668 57 41 44 chr15 34879708 34882989 -66497532 - L1PA3 LINE L1 -2857 3289 20 25 51 0 0 chr15 34883614 34883653 -66496868 + GC_rich Low_complexity Low_complexity 1 39 0 2071 119 0 6 chr15 34885948 34886259 -66494262 + AluSx SINE Alu 1 309 -3 1704 114 99 4 chr15 34886406 34886678 -66493843 + AluSq SINE Alu 2 299 -14 1709 157 0 20 chr15 34887170 34887463 -66493058 - AluJb SINE Alu -25 287 1 1902 138 10 0 chr15 34887614 34887903 -66492618 + AluJb SINE Alu 3 294 -18 2044 132 56 0 chr15 34888156 34888475 -66492046 - MER1B DNA MER1_type 0 337 1 800 137 0 0 chr15 34888992 34889116 -66491405 + FRAM SINE Alu 38 161 -15 1697 125 55 14 chr15 34889332 34889621 -66490900 + AluSx SINE Alu 1 301 -11 569 198 62 62 chr15 34890492 34890604 -66489917 - MER104 DNA Tc2 -1721 177 63 2033 84 0 0 chr15 34890604 34890866 -66489655 + AluSc SINE Alu 35 296 -13 569 198 62 62 chr15 34890866 34890915 -66489606 - MER104 DNA Tc2 -1834 64 16 1313 182 57 29 chr15 34890972 34891252 -66489269 + AluJb SINE Alu 2 289 -23 2315 84 13 0 chr15 34891554 34891863 -66488658 + AluSp SINE Alu 1 313 0 506 287 13 7 chr15 34892867 34893017 -66487504 - MIR SINE MIR -15 247 97 2109 87 3 48 chr15 34893403 34893713 -66486808 + AluSg SINE Alu 1 296 -14 355 253 104 66 chr15 34894113 34894316 -66486205 - HAL1 LINE L1 -1207 3305 1113 1610 164 16 36 chr15 34894490 34894794 -66485727 + AluSx SINE Alu 2 299 -13 1825 133 7 31 chr15 34894961 34895255 -66485266 + AluSx SINE Alu 1 287 -25 264 30 0 0 chr15 34895255 34895288 -66485233 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 210 380 11 0 chr15 34896401 34896426 -66484095 - L2 LINE L2 0 3313 3290 1386 229 52 43 chr15 34896426 34896889 -66483632 + MLT1C LTR MaLR 1 467 0 210 380 11 0 chr15 34896889 34896955 -66483566 - L2 LINE L2 -23 3290 3221 680 234 0 58 chr15 34896982 34897153 -66483368 + AluJo SINE Alu 127 287 -25 1641 181 27 0 chr15 34897164 34897462 -66483059 + AluJb SINE Alu 5 310 -2 1761 207 103 40 chr15 34897484 34897693 -66482828 - L2 LINE L2 -55 3258 3063 1927 100 6 56 chr15 34897693 34898012 -66482509 - AluSx SINE Alu -9 303 1 1761 207 103 40 chr15 34898012 34898572 -66481949 - L2 LINE L2 -250 3063 2457 1440 118 22 0 chr15 34900132 34900360 -66480161 + AluSx SINE Alu 1 233 -79 829 204 51 0 chr15 34900535 34900692 -66479829 + FRAM SINE Alu 1 164 -12 471 316 47 10 chr15 34901068 34901261 -66479260 - L3 LINE CR1 -9 1568 1369 391 259 51 107 chr15 34901271 34901487 -66479034 - MIR SINE MIR -12 250 47 775 213 33 16 chr15 34901813 34901996 -66478525 + L1ME3 LINE L1 5967 6152 -10 782 194 32 11 chr15 34902280 34902466 -66478055 + L1MB7 LINE L1 5929 6118 -66 945 119 7 13 chr15 34902466 34902617 -66477904 + AluSq/x SINE Alu 1 150 -162 396 0 0 0 chr15 34902948 34902992 -66477529 + (CA)n Simple_repeat Simple_repeat 1 44 0 722 192 8 0 chr15 34903308 34903433 -66477088 + FLAM_C SINE Alu 1 126 -7 1375 160 0 35 chr15 34903456 34903712 -66476809 + AluJb SINE Alu 11 257 -55 1999 108 0 0 chr15 34903799 34904076 -66476445 + AluYa5 SINE Alu 1 277 -34 234 291 12 12 chr15 34904239 34904325 -66476196 - AluS SINE Alu -206 97 12 216 217 0 43 chr15 34904681 34904727 -66475794 + MER5A DNA MER1_type 61 104 -85 1277 107 93 0 chr15 34904758 34904963 -66475558 + AluSq SINE Alu 1 224 -89 198 233 0 0 chr15 34905087 34905147 -66475374 + CT-rich Low_complexity Low_complexity 1 60 0 394 103 0 52 chr15 34905176 34905234 -66475287 - LTR8 LTR ERV1 -88 603 549 1828 132 7 7 chr15 34905243 34905530 -66474991 - AluSx SINE Alu -25 287 1 370 237 52 21 chr15 34905637 34905734 -66474787 - L2 LINE L2 -5 3308 3209 1156 154 0 10 chr15 34905835 34906030 -66474491 - AluJo SINE Alu -25 287 95 192 254 111 0 chr15 34906030 34906093 -66474428 + L2 LINE L2 2339 2408 -906 258 156 89 0 chr15 34906737 34906782 -66473739 + L2 LINE L2 3262 3310 -3 * 594 249 101 43 chr15 34906750 34906871 -66473650 - MIR SINE MIR -1 261 122 237 83 0 0 chr15 34906871 34906907 -66473614 + (CAA)n Simple_repeat Simple_repeat 2 37 0 594 249 101 43 chr15 34906907 34906994 -66473527 - MIR SINE MIR -140 122 41 478 295 0 8 chr15 34907249 34907371 -66473150 + MIR3 SINE MIR 58 178 -30 721 194 0 0 chr15 34907380 34907514 -66473007 + FRAM SINE Alu 40 173 -3 1903 138 0 7 chr15 34907734 34908030 -66472491 + AluSx SINE Alu 6 299 -13 2086 91 7 19 chr15 34908033 34908342 -66472179 + AluSx SINE Alu 8 312 0 375 256 51 34 chr15 34908577 34908694 -66471827 + MIR3 SINE MIR 83 201 -7 1947 118 7 20 chr15 34909202 34909506 -66471015 + AluSx SINE Alu 1 300 -12 462 18 0 0 chr15 34909506 34909561 -66470960 + (TA)n Simple_repeat Simple_repeat 1 55 0 825 191 51 0 chr15 34909655 34909812 -66470709 + FRAM SINE Alu 1 164 -12 447 319 48 11 chr15 34910188 34910376 -66470145 - L3 LINE CR1 -9 1568 1374 795 188 32 11 chr15 34910871 34911057 -66469464 + L1MB7 LINE L1 5929 6118 -66 2291 82 10 0 chr15 34911057 34911361 -66469160 + AluSq SINE Alu 1 307 -6 308 256 0 39 chr15 34911484 34911562 -66468959 + MER5A DNA MER1_type 2 76 -113 22 0 0 0 chr15 34911577 34911599 -66468922 + AT_rich Low_complexity Low_complexity 1 22 0 1572 88 0 0 chr15 34911606 34911811 -66468710 + AluSg SINE Alu 1 205 -105 290 186 57 43 chr15 34911961 34912031 -66468490 + L1ME3 LINE L1 6004 6074 -88 1038 252 19 0 chr15 34912063 34912277 -66468244 + MER82 DNA MER2_type 436 653 0 305 172 31 0 chr15 34912414 34912478 -66468043 - MLT1J2 LTR MaLR -316 134 69 1827 154 3 3 chr15 34912577 34912869 -66467652 + AluSx SINE Alu 1 292 -20 663 115 0 0 chr15 34912880 34912984 -66467537 - AluSp/q SINE Alu -4 309 206 189 171 0 0 chr15 34913226 34913261 -66467260 + MIR SINE MIR 110 144 -118 2205 88 7 3 chr15 34913261 34913566 -66466955 + AluSc SINE Alu 1 306 -3 1923 112 16 35 chr15 34913566 34913878 -66466643 + AluSx SINE Alu 5 310 -2 375 256 51 34 chr15 34914110 34914227 -66466294 + MIR3 SINE MIR 83 201 -7 297 0 0 0 chr15 34914783 34914816 -66465705 + (CTG)n Simple_repeat Simple_repeat 1 33 0 979 218 86 25 chr15 34916125 34916368 -66464153 + MIR SINE MIR 3 260 -2 546 260 202 36 chr15 34918132 34918355 -66462166 + MIR SINE MIR 3 262 0 476 254 42 68 chr15 34918484 34918679 -66461842 + MIR3 SINE MIR 20 212 -50 286 204 0 19 chr15 34918646 34918700 -66461821 - L2 LINE L2 -19 3253 3201 * 592 173 0 0 chr15 34919699 34919803 -66460718 - U13 snRNA snRNA 0 104 1 2077 106 3 19 chr15 34919839 34920150 -66460371 + AluSg SINE Alu 5 310 0 405 0 0 0 chr15 34922446 34922491 -66458030 + (CA)n Simple_repeat Simple_repeat 2 46 0 370 261 22 0 chr15 34922754 34922846 -66457675 - MIR3 SINE MIR -17 191 98 1356 145 0 148 chr15 34923288 34923451 -66457070 - AluJo SINE Alu -24 288 199 2060 114 0 7 chr15 34923451 34923750 -66456771 - AluSg SINE Alu -13 297 1 1356 145 0 148 chr15 34923750 34923924 -66456597 - AluJo SINE Alu -113 199 1 214 178 67 0 chr15 34923947 34923992 -66456529 + CT-rich Low_complexity Low_complexity 4 51 0 390 198 50 40 chr15 34924246 34924347 -66456174 - L2 LINE L2 -8 3264 3163 790 297 36 9 chr15 34924417 34924639 -66455882 + MIR SINE MIR 35 262 0 2154 91 10 0 chr15 34924748 34925044 -66455477 - AluSx SINE Alu -11 301 3 933 163 0 53 chr15 34925046 34925236 -66455285 + AluJb SINE Alu 115 294 -18 342 129 16 16 chr15 34925241 34925303 -66455218 + AluJ/FLAM SINE Alu 2 63 -239 273 222 0 0 chr15 34925403 34925466 -66455055 + T-rich Low_complexity Low_complexity 1 63 0 230 284 0 15 chr15 34925490 34925557 -66454964 + CT-rich Low_complexity Low_complexity 1 66 0 889 197 30 30 chr15 34925684 34925887 -66454634 - AluSq SINE Alu -74 239 37 220 323 21 21 chr15 34925900 34925996 -66454525 + MIR SINE MIR 45 140 -68 407 307 213 31 chr15 34926880 34927167 -66453354 + L3 LINE CR1 1219 1557 -20 1961 131 0 0 chr15 34927337 34927611 -66452910 - AluSx SINE Alu 0 312 39 2259 95 0 0 chr15 34927731 34928047 -66452474 - AluSg SINE Alu 0 316 1 882 148 0 7 chr15 34928213 34928348 -66452173 + AluSg SINE Alu 3 136 -174 1161 136 0 17 chr15 34928684 34928861 -66451660 - AluSq SINE Alu -48 265 92 2120 116 3 3 chr15 34929529 34929823 -66450698 - AluSc SINE Alu -15 294 1 1557 149 11 23 chr15 34930993 34931255 -66449266 - AluSg SINE Alu -51 259 1 2098 147 16 0 chr15 34931381 34931687 -66448834 - AluSx SINE Alu -1 311 1 33 56 0 0 chr15 34931879 34931933 -66448588 + AT_rich Low_complexity Low_complexity 1 54 0 813 103 0 0 chr15 34932196 34932303 -66448218 - U6 snRNA snRNA 0 107 1 339 257 57 0 chr15 34932401 34932506 -66448015 - MIR SINE MIR -10 252 142 2344 91 3 3 chr15 34932512 34932808 -66447713 - AluSq SINE Alu -17 296 1 2417 98 0 0 chr15 34932822 34933129 -66447392 - AluSc SINE Alu -2 307 1 2210 77 3 70 chr15 34933791 34934103 -66446418 - AluSg SINE Alu -19 291 1 287 318 27 7 chr15 34934489 34934637 -66445884 + MIR SINE MIR 97 247 -15 821 150 0 0 chr15 34935054 34935174 -66445347 - FLAM_C SINE Alu -22 121 2 298 140 105 0 chr15 34935226 34935283 -66445238 + HsTC2 DNA Tc2 2 64 -1834 597 118 0 12 chr15 34935283 34935496 -66445025 - AluSc SINE Alu -9 300 35 247 286 80 18 chr15 34935497 34935609 -66444912 + MER104 DNA Tc2 59 177 -3 1025 152 71 41 chr15 34936481 34936678 -66443843 - AluSc SINE Alu -8 301 99 2203 124 0 0 chr15 34937225 34937532 -66442989 + AluSx SINE Alu 1 307 -5 711 165 0 0 chr15 34937717 34937838 -66442683 - FRAM SINE Alu -15 161 41 2465 81 0 0 chr15 34938004 34938313 -66442208 + AluY SINE Alu 1 309 -2 2028 132 56 0 chr15 34938693 34939012 -66441509 + MER1B DNA MER1_type 1 337 0 2002 140 11 0 chr15 34939265 34939550 -66440971 - AluJb SINE Alu -22 290 3 1749 181 0 17 chr15 34939701 34939999 -66440522 + AluJb SINE Alu 1 293 -19 2474 64 0 3 chr15 34940292 34940588 -66439933 + AluY SINE Alu 1 295 -16 1867 113 98 4 chr15 34940803 34941078 -66439443 - AluSq SINE Alu -12 301 1 230 290 19 42 chr15 34941227 34941353 -66439168 + GA-rich Low_complexity Low_complexity 5 212 0 433 329 0 20 chr15 34941375 34941521 -66439000 + G-rich Low_complexity Low_complexity 3 145 0 789 222 67 0 chr15 34941626 34941806 -66438715 - L1M4 LINE L1 -3364 2782 2591 983 199 0 37 chr15 34941811 34942002 -66438519 - AluJb SINE Alu -11 301 118 2219 113 3 6 chr15 34942112 34942423 -66438098 - AluSx SINE Alu -2 310 1 225 0 0 0 chr15 34943748 34943773 -66436748 + (A)n Simple_repeat Simple_repeat 1 25 0 2304 61 0 0 chr15 34943775 34944080 -66436441 + AluY SINE Alu 3 307 0 205 283 9 38 chr15 34944463 34944569 -66435952 + (CCCCAG)n Simple_repeat Simple_repeat 2 104 0 2284 92 3 3 chr15 34946501 34946795 -66433726 + AluSp SINE Alu 1 294 -19 2271 101 3 7 chr15 34947079 34947376 -66433145 - AluSq SINE Alu -17 296 1 2108 86 18 0 chr15 34947381 34947694 -66432827 - AluSx SINE Alu 0 318 1 914 71 9 0 chr15 34947838 34947951 -66432570 + AluSq/x SINE Alu 22 135 -178 1614 162 6 60 chr15 34947951 34948266 -66432255 + AluJb SINE Alu 1 298 -14 522 53 53 0 chr15 34948381 34948456 -66432065 - AluSg/x SINE Alu -17 295 217 855 133 0 73 chr15 34948456 34948621 -66431900 - AluSq SINE Alu -160 153 1 2254 66 24 0 chr15 34949417 34949704 -66430817 + AluY SINE Alu 1 294 -17 2224 114 0 3 chr15 34949769 34950067 -66430454 + AluSg SINE Alu 1 297 -13 329 245 75 0 chr15 34951260 34951354 -66429167 - HsTC2 DNA Tc2 0 1898 1798 2054 108 0 0 chr15 34952014 34952282 -66428239 - AluSx SINE Alu -30 282 15 2435 93 0 0 chr15 34953033 34953333 -66427188 + AluSc SINE Alu 1 300 -9 1274 164 134 22 chr15 34953380 34953648 -66426873 + AluJo SINE Alu 1 298 -14 1361 160 143 0 chr15 34953649 34953887 -66426634 + AluJb SINE Alu 24 295 -17 2214 97 0 7 chr15 34953963 34954253 -66426268 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr15 34954810 34954831 -66425690 + AT_rich Low_complexity Low_complexity 1 21 0 633 127 34 34 chr15 34954944 34955062 -66425459 + AluSp/q SINE Alu 183 300 -13 386 267 127 0 chr15 34955070 34955220 -66425301 + MIR SINE MIR 71 239 -23 197 306 0 32 chr15 34955561 34955623 -66424898 - MER5B DNA MER1_type -104 74 15 446 244 36 65 chr15 34956113 34956281 -66424240 - L2 LINE L2 0 3313 3151 459 225 126 9 chr15 34956285 34956396 -66424125 + FLAM_A SINE Alu 1 124 -9 2635 40 0 0 chr15 34956407 34956704 -66423817 + AluY SINE Alu 1 297 -14 2139 106 0 11 chr15 34956709 34956992 -66423529 + AluSg SINE Alu 1 280 -30 890 117 21 163 chr15 34957037 34957093 -66423428 + L1MB3 LINE L1 5444 5506 -677 2282 78 27 0 chr15 34957093 34957389 -66423132 + AluSp SINE Alu 1 304 -9 890 117 21 163 chr15 34957389 34957507 -66423014 + L1MB3 LINE L1 5506 5639 -544 2075 131 3 16 chr15 34957507 34957819 -66422702 + AluSx SINE Alu 1 308 -4 2116 136 7 3 chr15 34957824 34958133 -66422388 + AluSx SINE Alu 1 310 -2 2260 88 0 0 chr15 34958139 34958445 -66422076 + AluY SINE Alu 1 306 0 890 117 21 163 chr15 34958445 34958494 -66422027 + L1MB3 LINE L1 5594 5648 -535 758 220 105 31 chr15 34958497 34958688 -66421833 - MER6B DNA MER2_type -5 205 1 970 154 24 12 chr15 34958701 34958870 -66421651 + L1MB3 LINE L1 5679 5849 -334 2247 78 7 36 chr15 34958934 34959241 -66421280 + AluSq SINE Alu 1 298 -15 1801 162 3 3 chr15 34959252 34959549 -66420972 + AluJo SINE Alu 14 310 -2 278 176 88 77 chr15 34959549 34959640 -66420881 + L1MC/D LINE L1 5726 5817 -1991 2346 70 0 10 chr15 34959661 34959961 -66420560 - AluY SINE Alu -14 297 1 21 36 0 0 chr15 34959961 34959989 -66420532 + AT_rich Low_complexity Low_complexity 1 28 0 2378 79 3 13 chr15 34960088 34960391 -66420130 + AluY SINE Alu 1 300 -11 2470 74 3 0 chr15 34961362 34961661 -66418860 + AluSp SINE Alu 2 301 -12 2214 126 0 0 chr15 34962422 34962724 -66417797 - AluSq SINE Alu -11 302 1 278 302 40 40 chr15 34962749 34962875 -66417646 - MIR3 SINE MIR -48 160 35 1705 166 3 18 chr15 34963065 34963348 -66417173 + AluJo SINE Alu 15 293 -19 21 0 0 0 chr15 34964845 34964866 -66415655 + AT_rich Low_complexity Low_complexity 1 21 0 2336 103 0 7 chr15 34964878 34965188 -66415333 + AluSp SINE Alu 5 312 -1 2202 110 20 0 chr15 34965306 34965605 -66414916 + AluSg SINE Alu 5 309 -1 895 114 14 57 chr15 34965631 34965771 -66414750 + AluJo SINE Alu 1 134 -178 207 277 0 0 chr15 34966121 34966186 -66414335 + T-rich Low_complexity Low_complexity 1 65 0 2205 87 7 7 chr15 34966714 34967002 -66413519 + AluSq SINE Alu 9 296 -17 354 198 0 6 chr15 34967157 34967229 -66413292 - AluSp SINE Alu -107 196 136 2058 83 69 7 chr15 34968378 34968667 -66411854 - AluSp SINE Alu -6 307 1 501 209 310 6 chr15 34969458 34969616 -66410905 + MER3 DNA MER1_type 4 209 0 3956 164 58 4 chr15 35070150 35071443 -66309078 - L1PA15 LINE L1 -338 5827 4470 212 271 0 34 chr15 35071556 35071615 -66308906 - MIR SINE MIR -192 70 14 298 0 23 23 chr15 35071711 35071754 -66308767 + (CA)n Simple_repeat Simple_repeat 1 43 0 26 0 0 0 chr15 35072178 35072204 -66308317 + AT_rich Low_complexity Low_complexity 1 26 0 2256 163 9 0 chr15 35072490 35072833 -66307688 - MER7A DNA MER2_type -1 345 2 259 247 0 39 chr15 35073618 35073695 -66306826 + CT-rich Low_complexity Low_complexity 1 74 0 5765 21 6 0 chr15 35074151 35074812 -66305709 - L1P LINE L1 -1592 4554 3890 575 56 14 0 chr15 35074805 35074876 -66305645 + L1P LINE L1 3788 3859 -2287 * 1808 125 0 4 chr15 35075594 35075850 -66304671 + AluSx SINE Alu 44 298 -14 24 0 0 0 chr15 35075985 35076009 -66304512 + AT_rich Low_complexity Low_complexity 1 24 0 1318 181 49 29 chr15 35076198 35076579 -66303942 + L1M4 LINE L1 5059 5447 -727 295 357 159 19 chr15 35076942 35077384 -66303137 - L2 LINE L2 -84 3229 2728 233 316 92 0 chr15 35077819 35077917 -66302604 - MIR SINE MIR -30 232 126 180 0 0 0 chr15 35079623 35079643 -66300878 + (T)n Simple_repeat Simple_repeat 1 20 0 733 269 60 67 chr15 35081605 35081936 -66298585 - L2 LINE L2 0 3313 2985 199 196 43 0 chr15 35082690 35082736 -66297785 + MIR SINE MIR 215 262 0 438 337 195 21 chr15 35084242 35084759 -66295762 - L3 LINE CR1 -3 1574 968 620 226 226 57 chr15 35084954 35085268 -66295253 + MLT1G1 LTR MaLR 222 588 -7 210 156 0 0 chr15 35085476 35085521 -66295000 + (CCCTAG)n Simple_repeat Simple_repeat 2 46 0 266 314 13 56 chr15 35085697 35085822 -66294699 + MIR3 SINE MIR 57 177 -31 180 0 0 0 chr15 35086084 35086104 -66294417 + (CAGCC)n Simple_repeat Simple_repeat 1 20 0 202 347 144 41 chr15 35086464 35086735 -66293786 - L3b LINE CR1 -8 1575 1277 283 226 323 13 chr15 35087189 35087344 -66293177 + LTR41 LTR ERVL 3 205 -568 443 245 106 37 chr15 35087501 35087746 -66292775 + LTR41 LTR ERVL 506 767 -6 435 200 0 0 chr15 35087770 35087850 -66292671 - MIR SINE MIR -70 192 113 182 331 44 52 chr15 35087902 35088038 -66292483 + MIR3 SINE MIR 43 177 -31 456 221 277 20 chr15 35088690 35088885 -66291636 + MIR SINE MIR 4 248 -14 300 111 0 0 chr15 35089173 35089218 -66291303 + (CA)n Simple_repeat Simple_repeat 1 45 0 227 259 0 0 chr15 35089693 35089747 -66290774 - MIR SINE MIR -129 133 80 2868 234 23 13 chr15 35090342 35091030 -66289491 - L1ME1 LINE L1 -15 6151 5457 986 156 25 0 chr15 35091766 35091926 -66288595 - MLT1B LTR MaLR 0 390 227 235 192 0 123 chr15 35092026 35092099 -66288422 - MLT1B LTR MaLR -326 64 1 3300 167 49 36 chr15 35092111 35092804 -66287717 + L1MA8 LINE L1 5586 6287 -4 304 225 31 78 chr15 35092847 35092976 -66287545 - MIR SINE MIR -21 241 119 2138 179 35 98 chr15 35093338 35093943 -66286578 - MLT1F1 LTR MaLR 0 567 1 259 252 75 9 chr15 35094042 35094149 -66286372 + MIR3 SINE MIR 85 198 -10 1624 123 0 0 chr15 35095802 35096021 -66284500 + AluSx SINE Alu 1 219 -93 753 131 0 0 chr15 35096021 35096120 -66284401 + AluSg/x SINE Alu 188 286 -26 1616 232 47 7 chr15 35096132 35096554 -66283967 + Charlie4a DNA MER1_type 69 507 -1 242 260 65 52 chr15 35097895 35098049 -66282472 - L1ME4a LINE L1 -126 5995 5840 231 204 0 0 chr15 35098587 35098636 -66281885 + (CTTTG)n Simple_repeat Simple_repeat 2 50 0 243 278 67 0 chr15 35099417 35099507 -66281014 - MIR3 SINE MIR -13 195 100 1211 206 67 58 chr15 35099832 35100192 -66280329 + L1ME2 LINE L1 5800 6162 -2 2908 229 63 29 chr15 35100205 35102623 -66277898 + L1M4 LINE L1 2272 4910 -1236 198 238 24 0 chr15 35102723 35102765 -66277756 - MIR SINE MIR -18 244 202 301 345 73 44 chr15 35102953 35103228 -66277293 + L2 LINE L2 2834 3116 -197 319 262 124 28 chr15 35103472 35103617 -66276904 + MIR3 SINE MIR 23 181 -27 648 241 50 54 chr15 35103638 35103879 -66276642 - MIR SINE MIR -4 258 19 182 310 23 69 chr15 35104677 35104764 -66275757 + MER5A DNA MER1_type 60 142 -47 21 36 0 0 chr15 35106598 35106626 -66273895 + AT_rich Low_complexity Low_complexity 1 28 0 311 308 33 25 chr15 35106939 35107059 -66273462 + L2 LINE L2 3189 3309 -4 324 0 0 0 chr15 35109422 35109458 -66271063 + (TG)n Simple_repeat Simple_repeat 1 36 0 250 267 122 0 chr15 35109603 35109693 -66270828 + MIR3 SINE MIR 3 103 -105 277 244 24 104 chr15 35109707 35109871 -66270650 - L2 LINE L2 -179 3093 2943 510 147 53 11 chr15 35110128 35110223 -66270298 + L1PA15 LINE L1 6059 6157 -8 848 214 0 0 chr15 35110566 35110725 -66269796 + FRAM SINE Alu 1 158 -18 3174 228 43 52 chr15 35111205 35112538 -66267983 - L1ME1 LINE L1 -23 6423 5088 627 301 27 35 chr15 35112827 35113086 -66267435 + MIR SINE MIR 2 258 -4 621 260 128 23 chr15 35113994 35114436 -66266085 + LTR33 LTR ERVL 1 521 0 218 200 55 36 chr15 35114509 35114564 -66265957 - MIR SINE MIR -12 250 195 637 235 86 6 chr15 35114637 35114799 -66265722 - MIR SINE MIR -67 195 21 254 212 47 12 chr15 35115933 35116018 -66264503 - L1ME1 LINE L1 -4333 2093 2006 305 223 11 0 chr15 35116018 35116112 -66264409 + (CATATA)n Simple_repeat Simple_repeat 5 99 0 816 310 72 34 chr15 35116271 35116716 -66263805 - LTR16B LTR ERVL -2 462 1 355 307 104 12 chr15 35118514 35118677 -66261844 + MIR SINE MIR 12 189 -73 1360 107 22 45 chr15 35118949 35119173 -66261348 - L1MA4 LINE L1 -2 6298 6080 1386 229 10 7 chr15 35119759 35120052 -66260469 - AluJo SINE Alu -18 294 1 1270 307 100 28 chr15 35120108 35120930 -66259591 - L2 LINE L2 -615 2699 1819 22 0 0 0 chr15 35121133 35121155 -66259366 + AT_rich Low_complexity Low_complexity 1 22 0 8281 18 0 1 chr15 35122047 35123400 -66257121 + L1PA2 LINE L1 4803 6154 -1 303 261 91 10 chr15 35123718 35123817 -66256704 - MIR SINE MIR -22 186 79 3315 79 18 20 chr15 35124137 35124582 -66255939 - MLT2A1 LTR ERVL 0 444 1 202 255 135 92 chr15 35124709 35124850 -66255671 - MER5A DNA MER1_type 0 189 43 361 250 40 48 chr15 35125180 35125304 -66255217 + MIR SINE MIR 20 142 -66 306 0 0 0 chr15 35125646 35125680 -66254841 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1645 197 0 7 chr15 35125680 35125958 -66254563 - AluJo SINE Alu -32 280 5 465 143 0 14 chr15 35126586 35126656 -66253865 + Tigger2 DNA MER2_type 1 69 -2649 * 2154 138 128 20 chr15 35126639 35127045 -66253476 + Tigger2 DNA MER2_type 2267 2716 -2 1709 193 5 108 chr15 35127045 35127257 -66253264 - MLT1B LTR MaLR 0 390 244 1806 103 0 0 chr15 35127257 35127491 -66253030 - AluSg/x SINE Alu -8 302 69 1709 193 5 108 chr15 35127491 35127713 -66252808 - MLT1B LTR MaLR -146 244 1 776 180 16 139 chr15 35127959 35128204 -66252317 - MLT1A1 LTR MaLR -34 331 117 182 274 69 49 chr15 35129183 35129285 -66251236 + L2 LINE L2 2956 3059 -213 257 133 44 0 chr15 35129391 35129436 -66251085 + L2 LINE L2 3267 3313 0 574 332 57 8 chr15 35129600 35129844 -66250677 - MIR SINE MIR -6 256 1 563 301 66 0 chr15 35131065 35131248 -66249273 - MIR SINE MIR -66 196 2 855 240 20 10 chr15 35131323 35131527 -66248994 + MIR SINE MIR 57 262 0 235 312 46 37 chr15 35131955 35132064 -66248457 + L2 LINE L2 3150 3259 -13 207 69 0 0 chr15 35132065 35132094 -66248427 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 1933 136 75 36 chr15 35132294 35132655 -66247866 + THE1C LTR MaLR 1 375 0 939 186 12 12 chr15 35133649 35133821 -66246700 + MER5A DNA MER1_type 15 186 -3 238 250 355 0 chr15 35133853 35133977 -66246544 + MER5B DNA MER1_type 8 175 -3 659 329 99 14 chr15 35137159 35137451 -66243070 - MLT1J LTR MaLR -194 317 1 243 274 24 12 chr15 35137775 35137859 -66242662 + L1 LINE L1 4884 4968 -1178 254 346 12 38 chr15 35139261 35139470 -66241051 - MIR SINE MIR -39 223 22 341 300 31 23 chr15 35140229 35140359 -66240162 + L2 LINE L2 3182 3312 -1 890 128 0 8 chr15 35140675 35140808 -66239713 - AluSg/x SINE Alu -9 303 172 4948 173 120 12 chr15 35141524 35142502 -66238019 - Tigger6a DNA MER2_type 0 1083 1 260 182 18 0 chr15 35142800 35142855 -66237666 + L2 LINE L2 2997 3052 -220 297 280 97 0 chr15 35142882 35142975 -66237546 + L2 LINE L2 3169 3270 -2 1654 70 0 14 chr15 35144294 35144509 -66236012 + AluY SINE Alu 100 311 0 695 275 45 15 chr15 35144536 35144736 -66235785 - MLT1I LTR MaLR -203 206 1 3041 194 18 32 chr15 35145349 35145911 -66234610 + MLT2B3 LTR ERVL 1 554 0 2029 137 9 12 chr15 35146756 35147077 -66233444 + MER7A DNA MER2_type 4 321 -25 482 288 41 6 chr15 35147766 35147936 -66232585 - MIR SINE MIR -7 255 80 1212 194 80 123 chr15 35147947 35148420 -66232101 - LTR45B LTR ERV1 -10 479 27 379 316 92 5 chr15 35148435 35148631 -66231890 - L2 LINE L2 -671 2643 2431 2298 54 21 4 chr15 35149656 35149957 -66230564 + AluY SINE Alu 1 306 0 1656 119 97 0 chr15 35150037 35150306 -66230215 - L1MA1 LINE L1 -4 6298 6004 399 174 47 200 chr15 35150336 35150426 -66230095 + MER103 DNA DNA 4 53 -113 2103 107 18 11 chr15 35150426 35150734 -66229787 - AluSx SINE Alu 0 310 1 399 174 47 200 chr15 35150734 35150832 -66229689 + MER103 DNA DNA 53 164 -2 2045 148 60 49 chr15 35151517 35151902 -66228619 - MLT1B LTR MaLR -1 389 1 3172 124 2 2 chr15 35152058 35152500 -66228021 - L1PA16 LINE L1 -9 6157 5716 432 236 187 8 chr15 35152508 35152631 -66227890 - LTR67 LTR ERVL -339 218 74 409 226 143 42 chr15 35152821 35152989 -66227532 + LTR67 LTR ERVL 365 549 -8 311 216 216 0 chr15 35153131 35153233 -66227288 - MIR3 SINE MIR 0 208 85 364 234 0 13 chr15 35154331 35154408 -66226113 - MLT1A1 LTR MaLR -289 76 1 187 202 24 83 chr15 35154427 35154511 -66226010 + L3 LINE CR1 1242 1320 -257 2104 180 38 27 chr15 35155127 35155668 -66224853 - MLT2A2 LTR ERVL -7 547 1 2104 171 113 8 chr15 35155777 35156168 -66224353 - MSTB1 LTR MaLR 0 432 1 440 220 284 0 chr15 35156795 35156936 -66223585 + MER5A DNA MER1_type 8 188 -1 679 264 30 0 chr15 35156945 35157112 -66223409 - MER5B DNA MER1_type -6 172 1 3647 126 34 0 chr15 35157207 35157740 -66222781 - L1PA16 LINE L1 -3 6163 5613 2231 109 0 6 chr15 35158288 35158600 -66221921 + AluY SINE Alu 2 311 0 1147 108 38 0 chr15 35158600 35158757 -66221764 + AluSp SINE Alu 134 296 -17 360 298 0 26 chr15 35159088 35159202 -66221319 + MIR3 SINE MIR 69 179 -29 1415 253 48 5 chr15 35159468 35159887 -66220634 + L2 LINE L2 1829 2265 -1049 443 255 134 19 chr15 35161820 35161977 -66218544 - MER5A DNA MER1_type -14 175 1 189 241 0 0 chr15 35163769 35163823 -66216698 + (CA)n Simple_repeat Simple_repeat 1 54 0 195 326 109 0 chr15 35163825 35163917 -66216604 + L2 LINE L2 3152 3253 -19 2045 149 0 7 chr15 35167029 35167325 -66213196 + AluSx SINE Alu 1 294 -18 1536 168 77 157 chr15 35167581 35168128 -66212393 - MLT1D LTR MaLR 0 505 3 802 307 41 28 chr15 35168128 35168490 -66212031 + LTR16A LTR ERVL 78 444 -6 529 323 49 0 chr15 35168496 35168719 -66211802 + HERV16 LTR ERVL 1 234 -4762 1210 293 79 15 chr15 35168973 35169427 -66211094 + HERV16 LTR ERVL 590 1072 -3924 2469 78 0 3 chr15 35169673 35169982 -66210539 + AluY SINE Alu 1 308 -3 1278 261 35 13 chr15 35169983 35170301 -66210220 + HERV16 LTR ERVL 1713 2037 -2959 8977 187 55 19 chr15 35170315 35172378 -66208143 + L1MA9 LINE L1 3184 5320 -826 30 69 0 0 chr15 35172378 35172436 -66208085 + AT_rich Low_complexity Low_complexity 1 58 0 5335 169 25 6 chr15 35172436 35173420 -66207101 + L1MA9 LINE L1 5305 6308 -4 259 229 0 0 chr15 35173441 35173489 -66207032 + HERV16 LTR ERVL 3237 3284 -1712 * 1828 328 64 30 chr15 35173481 35175134 -66205387 + HERV16 LTR ERVL 3617 5365 -399 1184 266 52 23 chr15 35175312 35175699 -66204822 + LTR16A LTR ERVL 31 428 -22 533 235 105 6 chr15 35175848 35176010 -66204511 + L1ME4a LINE L1 5725 5902 -219 442 257 124 0 chr15 35177447 35177552 -66202969 - L2 LINE L2 -5 3308 3191 471 281 51 22 chr15 35178093 35178271 -66202250 + MIR SINE MIR 7 189 -73 436 240 22 77 chr15 35179109 35179292 -66201229 + MER5B DNA MER1_type 3 175 -3 232 344 165 19 chr15 35180677 35180889 -66199632 - MIR SINE MIR 0 262 20 329 341 36 0 chr15 35181342 35181480 -66199041 + MIR SINE MIR 2 144 -118 1524 54 21 0 chr15 35182255 35182441 -66198080 + MER107 DNA MER1_type 1 190 -7 431 284 45 80 chr15 35182727 35182776 -66197745 - MER5A DNA MER1_type -16 173 124 2195 120 3 0 chr15 35182776 35183075 -66197446 + AluSq SINE Alu 1 300 -13 431 284 45 80 chr15 35183075 35183201 -66197320 - MER5A DNA MER1_type -65 124 4 336 260 161 20 chr15 35184694 35184948 -66195573 - L1ME4a LINE L1 -2 6119 5830 * 381 292 65 77 chr15 35184918 35185340 -66195181 - L1ME4a LINE L1 -768 5378 5106 268 275 0 11 chr15 35185444 35185535 -66194986 - L1MC4a LINE L1 -1748 6060 5971 267 290 0 0 chr15 35186370 35186432 -66194089 + L2 LINE L2 3003 3064 -208 362 230 75 58 chr15 35187410 35187498 -66193023 - MER69 DNA AcHobo 0 2526 2441 2091 104 32 4 chr15 35187498 35187776 -66192745 + AluSg SINE Alu 3 288 -22 362 230 75 58 chr15 35187776 35187861 -66192660 - MER69 DNA AcHobo -85 2441 2350 1594 241 123 18 chr15 35187919 35188422 -66192099 - MER69 DNA AcHobo -670 556 1 181 191 21 0 chr15 35188683 35188730 -66191791 - MIR SINE MIR -48 214 167 322 264 10 32 chr15 35188730 35189031 -66191490 + GA-rich Low_complexity Low_complexity 1 294 0 309 323 37 37 chr15 35189740 35189901 -66190620 - L3b LINE CR1 -61 1522 1362 210 118 0 0 chr15 35189962 35189996 -66190525 + (A)n Simple_repeat Simple_repeat 1 34 0 2148 136 3 0 chr15 35190013 35190322 -66190199 - AluSx SINE Alu -2 310 1 316 364 85 6 chr15 35190951 35191127 -66189394 + MIR3 SINE MIR 14 203 -5 352 293 92 12 chr15 35191838 35192002 -66188519 + L1ME LINE L1 5504 5680 -441 321 314 112 12 chr15 35192041 35192210 -66188311 - MLT1L LTR MaLR -7 608 423 321 164 18 0 chr15 35192375 35192430 -66188091 - MLT1L LTR MaLR -392 223 168 2001 135 0 3 chr15 35192732 35193014 -66187507 + AluSx SINE Alu 3 283 -29 252 0 0 0 chr15 35194746 35194774 -66185747 + (CA)n Simple_repeat Simple_repeat 2 29 0 310 300 149 78 chr15 35196099 35196522 -66183999 + L1M2 LINE L1 443 895 -5954 261 0 0 0 chr15 35196773 35196802 -66183719 + (TC)n Simple_repeat Simple_repeat 1 29 0 739 204 126 0 chr15 35197981 35198148 -66182373 - MER5A DNA MER1_type 0 189 2 228 122 0 0 chr15 35201346 35201387 -66179134 + (CA)n Simple_repeat Simple_repeat 1 41 0 1459 106 89 8 chr15 35202128 35202365 -66178156 + L1MA9 LINE L1 6055 6310 -2 648 251 123 17 chr15 35202724 35202959 -66177562 + MIR SINE MIR 1 260 -2 729 235 96 62 chr15 35211254 35211487 -66169034 + L1ME4a LINE L1 5584 5838 -283 2090 93 50 0 chr15 35211487 35211766 -66168755 + AluSc SINE Alu 1 293 -16 729 235 96 62 chr15 35211766 35211937 -66168584 + L1ME4a LINE L1 5838 6002 -119 38 22 0 0 chr15 35211992 35212037 -66168484 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr15 35212322 35212354 -66168167 + AT_rich Low_complexity Low_complexity 1 32 0 976 200 0 0 chr15 35213213 35213388 -66167133 + FRAM SINE Alu 1 175 -1 21 0 0 0 chr15 35213909 35213930 -66166591 + AT_rich Low_complexity Low_complexity 1 21 0 1883 125 0 32 chr15 35215062 35215343 -66165178 - AluSx SINE Alu -13 299 28 1144 267 59 53 chr15 35215672 35216421 -66164100 - L1ME3A LINE L1 -287 5883 5131 231 233 0 33 chr15 35216903 35216963 -66163558 - MIR3 SINE MIR -136 72 15 205 255 0 0 chr15 35217375 35217422 -66163099 - L2 LINE L2 0 3313 3267 520 322 141 47 chr15 35217497 35218153 -66162368 + L2 LINE L2 2541 3267 -5 395 288 44 28 chr15 35218863 35219181 -66161340 + L2 LINE L2 1153 1558 -1756 306 141 62 47 chr15 35219297 35219361 -66161160 + L2 LINE L2 3180 3244 -69 316 350 43 34 chr15 35222295 35222529 -66157992 + MIR SINE MIR 13 248 -14 301 274 171 14 chr15 35222885 35223031 -66157490 - MIR SINE MIR -83 179 11 1655 180 0 14 chr15 35223547 35223842 -66156679 - AluJo SINE Alu -21 291 1 309 234 39 16 chr15 35224139 35224267 -66156254 + L1M4 LINE L1 3862 3992 -2154 2575 57 0 0 chr15 35224282 35224580 -66155941 - AluY SINE Alu -13 298 1 518 250 123 37 chr15 35224581 35224825 -66155696 + L1M4 LINE L1 4579 4843 -1303 270 229 86 38 chr15 35224833 35224938 -66155583 + L1P LINE L1 4903 5012 -1134 27 0 0 0 chr15 35226762 35226789 -66153732 + AT_rich Low_complexity Low_complexity 1 27 0 219 36 0 0 chr15 35227922 35227950 -66152571 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1964 134 3 11 chr15 35227955 35228239 -66152282 - AluSx SINE Alu -30 282 1 24 0 0 0 chr15 35229270 35229294 -66151227 + AT_rich Low_complexity Low_complexity 1 24 0 3071 154 41 19 chr15 35229384 35229461 -66151060 - L1MB7 LINE L1 0 6184 6110 2494 61 0 0 chr15 35229461 35229756 -66150765 - AluY SINE Alu -16 295 1 3071 154 41 19 chr15 35229756 35230242 -66150279 - L1MB7 LINE L1 -74 6110 5609 21 36 0 0 chr15 35230387 35230415 -66150106 + AT_rich Low_complexity Low_complexity 1 28 0 215 270 80 30 chr15 35230420 35230520 -66150001 + L2 LINE L2 3209 3313 0 22 0 0 0 chr15 35230596 35230618 -66149903 + AT_rich Low_complexity Low_complexity 1 22 0 610 269 66 6 chr15 35231523 35231705 -66148816 - MIR SINE MIR -51 211 19 236 312 36 5 chr15 35232523 35232620 -66147901 - MIR SINE MIR -66 142 46 219 69 0 0 chr15 35232664 35232693 -66147828 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 6006 124 53 16 chr15 35233706 35234277 -66146244 + Tigger3b DNA MER2_type 5 554 -2474 2185 125 22 33 chr15 35234277 35234645 -66145876 - THE1B LTR MaLR 0 364 1 6006 124 53 16 chr15 35234645 35234981 -66145540 + Tigger3b DNA MER2_type 554 961 -2067 1889 181 0 10 chr15 35234981 35235295 -66145226 - AluJb SINE Alu -1 311 1 6006 124 53 16 chr15 35235295 35235484 -66145037 + Tigger3b DNA MER2_type 961 1142 -89 201 214 0 71 chr15 35236036 35236092 -66144429 - L3 LINE CR1 -20 1557 1506 188 359 0 0 chr15 35236082 35236146 -66144375 - MIR SINE MIR -107 101 38 * 533 219 138 0 chr15 35236573 35236696 -66143825 - MIR SINE MIR -44 218 79 521 238 20 0 chr15 35237921 35238072 -66142449 - MER103 DNA DNA -2 164 11 223 271 0 0 chr15 35238251 35238299 -66142222 + L2 LINE L2 3217 3264 -8 376 237 41 21 chr15 35239679 35239776 -66140745 - MER5B DNA MER1_type 0 178 80 1747 24 0 0 chr15 35240008 35240216 -66140305 - L1PA2 LINE L1 -2 6153 5946 2566 164 30 77 chr15 35240806 35241466 -66139055 - L1MA9 LINE L1 -35 6277 5649 1470 162 0 74 chr15 35241467 35241764 -66138757 - AluJo SINE Alu -15 297 23 5266 196 106 30 chr15 35241777 35242959 -66137562 - MER52C LTR ERV1 0 1278 7 1551 151 7 0 chr15 35242964 35243236 -66137285 - L1MA9 LINE L1 -698 5614 5341 22 0 0 0 chr15 35245895 35245917 -66134604 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr15 35246293 35246322 -66134199 + AT_rich Low_complexity Low_complexity 1 29 0 2494 120 20 39 chr15 35247190 35247632 -66132889 + MER57B LTR ERV1 1 434 0 198 284 54 14 chr15 35247675 35247749 -66132772 + MIR3 SINE MIR 85 161 -47 468 341 8 0 chr15 35248175 35248301 -66132220 - L2 LINE L2 0 3272 3146 327 150 0 0 chr15 35249368 35249428 -66131093 + (CA)n Simple_repeat Simple_repeat 1 60 0 349 211 46 72 chr15 35250835 35250987 -66129534 + LTR67 LTR ERVL 408 555 -2 657 334 52 54 chr15 35251758 35252709 -66127812 + ERVL LTR ERVL 890 1838 -3926 425 303 71 34 chr15 35252821 35252877 -66127644 + ERVL LTR ERVL 2527 2579 -3185 2341 88 0 3 chr15 35252877 35253171 -66127350 - AluSc SINE Alu -16 293 1 425 303 71 34 chr15 35253171 35253381 -66127140 + ERVL LTR ERVL 2579 2803 -2961 1770 266 53 2 chr15 35253706 35254254 -66126267 - L2 LINE L2 -1308 2006 1431 2210 105 10 0 chr15 35254837 35255131 -66125390 + AluSc SINE Alu 1 297 -12 958 291 23 12 chr15 35256040 35256298 -66124223 - MIR SINE MIR 0 262 2 1768 138 98 20 chr15 35259994 35260341 -66120180 + THE1C LTR MaLR 2 375 0 412 333 0 26 chr15 35262234 35262390 -66118131 + MIR SINE MIR 35 186 -76 309 287 47 31 chr15 35264108 35264237 -66116284 - MIR SINE MIR -58 204 74 301 291 71 16 chr15 35264553 35264680 -66115841 + L2 LINE L2 3137 3270 -2 1948 141 7 10 chr15 35265700 35266005 -66114516 - AluJb SINE Alu -7 305 2 1636 111 0 25 chr15 35266040 35266283 -66114238 + AluSc SINE Alu 1 237 -72 435 239 51 67 chr15 35269945 35270200 -66110321 + HAL1 LINE L1 1850 2100 -407 * 602 274 118 18 chr15 35270186 35270577 -66109944 + HAL1 LINE L1 1998 2427 -80 37 91 0 14 chr15 35270595 35270686 -66109835 + AT_rich Low_complexity Low_complexity 1 91 -50 1932 140 31 0 chr15 35270686 35270847 -66109674 - AluSx SINE Alu -17 295 120 183 42 0 0 chr15 35270847 35270871 -66109650 + (TA)n Simple_repeat Simple_repeat 2 25 0 1932 140 31 0 chr15 35270871 35270995 -66109526 - AluSx SINE Alu -192 120 1 37 91 0 14 chr15 35270995 35271046 -66109475 + AT_rich Low_complexity Low_complexity 91 141 0 461 174 6 126 chr15 35271077 35271244 -66109277 - MER69 DNA AcHobo 0 2526 2380 296 180 33 0 chr15 35271359 35271420 -66109101 - MER69 DNA AcHobo -2463 63 1 243 229 195 42 chr15 35271499 35271617 -66108904 + MIR3 SINE MIR 1 136 -72 5114 162 30 14 chr15 35271739 35272820 -66107701 - L1 LINE L1 -1758 5807 4709 241 219 124 7 chr15 35273047 35273184 -66107337 - L1ME LINE L1 -227 5894 5742 4435 234 36 36 chr15 35273287 35274620 -66105901 - L1 LINE L1 -2865 4700 3369 749 194 0 15 chr15 35274620 35274754 -66105767 + FLAM_A SINE Alu 1 132 -1 4435 234 36 36 chr15 35274754 35275396 -66105125 - L1 LINE L1 -4196 3369 2713 1937 127 51 0 chr15 35275396 35275671 -66104850 - AluSg SINE Alu -21 289 1 4435 234 36 36 chr15 35275671 35275930 -66104591 - L1 LINE L1 -4852 2713 2456 865 287 31 82 chr15 35275927 35276377 -66104144 - L1 LINE L1 -5000 2496 2070 * 1355 256 60 62 chr15 35276716 35277350 -66103171 - L1 LINE L1 -5640 1856 1224 22 0 0 0 chr15 35277991 35278013 -66102508 + AT_rich Low_complexity Low_complexity 1 22 0 1522 129 61 0 chr15 35279455 35279734 -66100787 + L1MA5 LINE L1 6000 6295 -5 521 231 19 0 chr15 35279809 35279917 -66100604 - MER81 DNA DNA -4 110 1 544 264 62 62 chr15 35280058 35280266 -66100255 + MIR SINE MIR 7 214 -48 441 199 215 27 chr15 35280316 35280502 -66100019 + MER102a DNA MER1_type 100 320 -10 234 250 217 33 chr15 35280548 35280668 -66099853 + MER5A DNA MER1_type 48 189 0 360 195 136 160 chr15 35281782 35281840 -66098681 + MER5A DNA MER1_type 19 77 -112 2037 98 4 0 chr15 35281840 35282105 -66098416 + AluSp SINE Alu 1 266 -47 360 195 136 160 chr15 35282105 35282215 -66098306 + MER5A DNA MER1_type 77 183 -6 485 262 16 86 chr15 35282622 35282809 -66097712 + MER5B DNA MER1_type 1 174 -4 203 204 37 19 chr15 35282816 35282870 -66097651 + (TCCA)n Simple_repeat Simple_repeat 2 56 0 887 219 73 10 chr15 35282922 35283127 -66097394 - MER20 DNA MER1_type -1 218 1 787 234 186 53 chr15 35283627 35284024 -66096497 - MLT1D LTR MaLR -44 582 12 3020 159 51 12 chr15 35284034 35284639 -66095882 - L1MB8 LINE L1 -38 6140 5512 21 0 0 0 chr15 35289543 35289564 -66090957 + AT_rich Low_complexity Low_complexity 1 21 0 258 95 0 0 chr15 35289697 35289739 -66090782 + (T)n Simple_repeat Simple_repeat 1 42 0 258 288 182 35 chr15 35290519 35290717 -66089804 + L3b LINE CR1 1217 1443 -140 1497 99 5 19 chr15 35291356 35291567 -66088954 - AluSg/x SINE Alu -9 303 96 218 105 26 0 chr15 35291965 35292003 -66088518 + CT-rich Low_complexity Low_complexity 1 39 0 1857 228 30 52 chr15 35292132 35292826 -66087695 + L1ME4a LINE L1 4118 4796 -1350 28 0 0 0 chr15 35292853 35292881 -66087640 + AT_rich Low_complexity Low_complexity 1 28 0 188 282 167 13 chr15 35292968 35293046 -66087475 + L2 LINE L2 3182 3271 -1 22 0 0 0 chr15 35293164 35293186 -66087335 + AT_rich Low_complexity Low_complexity 1 22 0 757 203 139 25 chr15 35293354 35293556 -66086965 - MIR SINE MIR -3 259 35 2379 95 3 19 chr15 35295719 35296035 -66084486 - AluSq SINE Alu -2 311 1 267 399 68 7 chr15 35296190 35296338 -66084183 + L2 LINE L2 3116 3272 0 2307 130 3 14 chr15 35296798 35297168 -66083353 - MER47A DNA MER2_type 0 366 1 2451 231 31 9 chr15 35297607 35298178 -66082343 - MER21B LTR ERV1 -261 602 19 483 185 0 22 chr15 35298200 35298292 -66082229 - MER21B LTR ERV1 -773 90 1 357 345 144 14 chr15 35298626 35298936 -66081585 - L2 LINE L2 -292 2980 2629 270 367 41 0 chr15 35299987 35300085 -66080436 - MER91A DNA MER1_type -66 130 29 180 0 0 0 chr15 35300456 35300476 -66080045 + (TAGA)n Simple_repeat Simple_repeat 1 20 0 259 85 43 0 chr15 35301327 35301374 -66079147 + GA-rich Low_complexity Low_complexity 3 51 0 289 230 40 70 chr15 35302376 35302476 -66078045 + MIR SINE MIR 92 188 -74 804 151 0 23 chr15 35302493 35302665 -66077856 + L1MA7 LINE L1 6124 6291 0 2112 113 40 0 chr15 35303100 35303401 -66077120 + AluSq SINE Alu 1 313 0 397 280 129 22 chr15 35304843 35305207 -66075314 + L1ME4a LINE L1 5265 5667 -454 250 146 36 0 chr15 35305304 35305359 -66075162 + L1ME4a LINE L1 5860 5916 -205 201 98 39 39 chr15 35305384 35305435 -66075086 + GA-rich Low_complexity Low_complexity 4 54 0 525 16 0 0 chr15 35305447 35305509 -66075012 + (TG)n Simple_repeat Simple_repeat 2 63 0 189 0 0 0 chr15 35305830 35305851 -66074670 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 1032 182 98 42 chr15 35306640 35306947 -66073574 + MER33 DNA MER1_type 1 324 0 309 272 130 54 chr15 35307601 35307785 -66072736 - MLT1J LTR MaLR -202 309 112 281 355 40 7 chr15 35308723 35308875 -66071646 + L2 LINE L2 2894 3050 -222 1895 164 0 0 chr15 35309455 35309741 -66070780 + AluJo SINE Alu 5 290 -22 704 305 79 58 chr15 35310198 35311109 -66069412 - L1MEd LINE L1 -5187 932 3 38 61 0 0 chr15 35311287 35311353 -66069168 + AT_rich Low_complexity Low_complexity 1 66 0 2292 104 3 0 chr15 35311564 35311863 -66068658 - AluSp SINE Alu -13 300 1 1115 63 6 19 chr15 35312184 35312342 -66068179 + L1PA8 LINE L1 6017 6172 0 194 326 130 0 chr15 35313176 35313268 -66067253 + MIR3 SINE MIR 98 201 -7 2323 110 0 0 chr15 35314296 35314595 -66065926 + AluSx SINE Alu 4 302 -10 359 332 35 62 chr15 35314760 35315049 -66065472 - L1ME LINE L1 -458 5663 5383 335 250 50 10 chr15 35315158 35315258 -66065263 - L1ME4a LINE L1 -1 6120 6017 314 268 68 63 chr15 35315350 35315555 -66064966 - L1MC4a LINE L1 -1842 5966 5761 1298 141 163 103 chr15 35317009 35317329 -66063192 - Charlie3 DNA MER1_type 0 2712 1 329 313 11 0 chr15 35317334 35317417 -66063104 - MIR SINE MIR -104 104 23 367 165 0 6 chr15 35317581 35317840 -66062681 + AluJo SINE Alu 1 300 0 798 276 20 0 chr15 35318085 35318281 -66062240 + MIR SINE MIR 53 252 -10 1844 176 31 14 chr15 35318491 35318850 -66061671 - MLT1A1 LTR MaLR 0 365 1 2227 102 3 16 chr15 35319054 35319367 -66061154 - AluSx SINE Alu -3 309 1 23 54 0 0 chr15 35320448 35320485 -66060036 + AT_rich Low_complexity Low_complexity 1 37 0 786 144 0 0 chr15 35320665 35320783 -66059738 + FLAM_C SINE Alu 1 118 -15 21 36 0 0 chr15 35320783 35320811 -66059710 + AT_rich Low_complexity Low_complexity 1 28 0 397 230 103 32 chr15 35321197 35321323 -66059198 + MIR3 SINE MIR 15 149 -59 412 276 9 20 chr15 35321373 35321509 -66059012 + MIR SINE MIR 21 157 -67 245 333 0 10 chr15 35321960 35322059 -66058462 - MER5A DNA MER1_type 0 189 92 1799 160 13 26 chr15 35322067 35322374 -66058147 + AluJb SINE Alu 1 303 -9 182 322 58 23 chr15 35322425 35322512 -66058009 + L2 LINE L2 2602 2691 -623 257 346 39 31 chr15 35323009 35323033 -66057488 + L3 LINE CR1 1434 1456 -121 2822 101 24 14 chr15 35323033 35323457 -66057064 + MSTA LTR MaLR 1 428 0 257 346 39 31 chr15 35323457 35323559 -66056962 + L3 LINE CR1 1456 1561 -16 21 36 0 0 chr15 35323642 35323670 -66056851 + AT_rich Low_complexity Low_complexity 1 28 0 1744 190 54 63 chr15 35323721 35324194 -66056327 + L1ME4a LINE L1 5122 5599 -565 2445 74 3 0 chr15 35324194 35324491 -66056030 - AluSc SINE Alu -6 303 6 1744 190 54 63 chr15 35324491 35324674 -66055847 + L1ME4a LINE L1 5599 5782 -382 341 261 90 30 chr15 35324711 35324845 -66055676 + LTR33 LTR ERVL 106 247 -274 235 301 98 15 chr15 35325454 35325587 -66054934 + LTR33 LTR ERVL 371 514 -7 221 102 41 0 chr15 35325587 35325636 -66054885 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 227 208 78 0 chr15 35325649 35325726 -66054795 + L1MC4 LINE L1 6620 6702 -1340 * 287 179 140 112 chr15 35325698 35325877 -66054644 + L1ME4a LINE L1 5935 6118 -3 1796 132 14 34 chr15 35325879 35326174 -66054347 - AluJb SINE Alu -14 298 10 264 289 92 13 chr15 35326268 35326344 -66054177 + MIR SINE MIR 50 131 -77 643 269 26 118 chr15 35329024 35329347 -66051174 - MER102b DNA MER1_type -1109 319 29 3223 144 31 8 chr15 35329347 35329862 -66050659 + MER1A DNA MER1_type 1 527 0 643 269 26 118 chr15 35329862 35329887 -66050634 - MER102b DNA MER1_type -1399 29 3 1538 165 7 15 chr15 35330061 35330334 -66050187 + AluJo SINE Alu 27 297 -15 449 261 81 31 chr15 35330455 35330616 -66049905 - MIR SINE MIR -41 221 53 2351 79 0 3 chr15 35330625 35330915 -66049606 - AluY SINE Alu -22 289 1 2428 67 3 3 chr15 35331642 35331939 -66048582 - AluY SINE Alu -14 297 1 2240 99 3 0 chr15 35332338 35332630 -66047891 + AluSc SINE Alu 1 293 -16 2219 113 0 23 chr15 35333173 35333475 -66047046 - AluSx SINE Alu -14 298 4 314 61 20 0 chr15 35334224 35334273 -66046248 + (CA)n Simple_repeat Simple_repeat 1 50 0 293 300 176 43 chr15 35334633 35334843 -66045678 - L2 LINE L2 -3 3269 3032 270 323 153 46 chr15 35334816 35335098 -66045423 - L2 LINE L2 -545 2769 2458 * 6101 181 42 19 chr15 35335111 35336676 -66043845 + L1PA15 LINE L1 4079 5708 -457 1662 213 0 7 chr15 35336676 35336977 -66043544 + AluJb SINE Alu 1 299 -13 6101 181 42 19 chr15 35336977 35337432 -66043089 + L1PA15 LINE L1 5708 6151 -14 445 311 39 64 chr15 35337533 35337816 -66042705 - L2 LINE L2 -889 2425 2150 431 262 21 35 chr15 35338288 35338433 -66042088 + LTR67 LTR ERVL 413 555 -2 231 287 35 23 chr15 35338972 35339059 -66041462 + LTR67 LTR ERVL 13 100 -457 2029 129 0 50 chr15 35339297 35339639 -66040882 - MER1B DNA MER1_type 0 339 15 2283 109 3 0 chr15 35339679 35339983 -66040538 + AluSq SINE Alu 1 305 -8 1902 125 39 0 chr15 35340499 35340779 -66039742 - AluSx SINE Alu -21 291 1 264 322 33 25 chr15 35341184 35341305 -66039216 + MLT1J LTR MaLR 232 353 -158 268 224 194 20 chr15 35341308 35341406 -66039115 + MLT1L LTR MaLR 500 614 -1 296 263 105 48 chr15 35341407 35341616 -66038905 + HAL1 LINE L1 1239 1459 -1048 5308 129 32 11 chr15 35342620 35343531 -66036990 - Tigger3b DNA MER2_type 0 1231 302 720 132 57 0 chr15 35343535 35343641 -66036880 - Tigger3b DNA MER2_type -1118 113 2 384 260 101 43 chr15 35343869 35344077 -66036444 + Charlie8 DNA MER1_type 38 257 -2160 806 244 50 9 chr15 35344141 35344362 -66036159 - LTR16A1 LTR ERVL -15 442 213 346 191 103 56 chr15 35344390 35344516 -66036005 - LTR16A1 LTR ERVL -325 132 1 * 382 284 31 16 chr15 35344516 35344640 -66035881 + Charlie8 DNA MER1_type 367 492 -1925 2011 82 0 7 chr15 35345121 35345400 -66035121 - L1PA13 LINE L1 -7 6156 5880 23 33 0 0 chr15 35345476 35345506 -66035015 + AT_rich Low_complexity Low_complexity 1 30 0 325 283 90 6 chr15 35346820 35346986 -66033535 - MER112 DNA MER1_type 0 260 81 21 0 0 0 chr15 35347573 35347594 -66032927 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr15 35348091 35348120 -66032401 + AT_rich Low_complexity Low_complexity 1 29 0 267 155 0 69 chr15 35350655 35350713 -66029808 - MER83 LTR ERV1 -2 446 393 2265 199 253 16 chr15 35350949 35351684 -66028837 + L1MC4 LINE L1 7132 7985 -10 228 100 0 0 chr15 35352176 35352216 -66028305 + (TCTG)n Simple_repeat Simple_repeat 2 41 0 306 0 0 0 chr15 35352226 35352260 -66028261 + (CA)n Simple_repeat Simple_repeat 1 34 0 3112 168 39 19 chr15 35352705 35353254 -66027267 - MER6A DNA MER2_type -261 604 41 1604 169 29 16 chr15 35353254 35353562 -66026959 + AluJo SINE Alu 1 312 0 3112 168 39 19 chr15 35353562 35353600 -66026921 - MER6A DNA MER2_type -824 41 5 515 153 10 0 chr15 35354448 35354546 -66025975 + CT-rich Low_complexity Low_complexity 3 101 0 349 337 30 15 chr15 35354879 35355081 -66025440 - HAL1b LINE L1 -625 723 519 288 193 81 131 chr15 35355879 35356053 -66024468 - MER20B DNA MER1_type -17 202 33 10571 184 33 23 chr15 35356108 35358866 -66021655 + L1MA9 LINE L1 2981 5774 -538 333 0 0 0 chr15 35358866 35358903 -66021618 + (CA)n Simple_repeat Simple_repeat 2 38 0 10571 184 33 23 chr15 35358903 35359410 -66021111 + L1MA9 LINE L1 5774 6274 -38 1069 215 61 0 chr15 35359548 35359795 -66020726 - L1P LINE L1 -987 5159 4898 * 3173 170 66 5 chr15 35359778 35360384 -66020137 + L1MC3 LINE L1 7133 7775 -10 243 271 71 45 chr15 35360660 35360815 -66019706 + L1ME4a LINE L1 3523 3681 -2465 478 342 60 7 chr15 35360885 35361154 -66019367 + L1ME4a LINE L1 3693 3975 -2171 24 32 0 0 chr15 35361228 35361259 -66019262 + AT_rich Low_complexity Low_complexity 1 31 0 1788 188 62 3 chr15 35361549 35361889 -66018632 + MLT1F1 LTR MaLR 208 567 0 1123 211 153 0 chr15 35363822 35364083 -66016438 - AluJo SINE Alu -1 301 1 27 49 0 0 chr15 35364655 35364696 -66015825 + AT_rich Low_complexity Low_complexity 1 41 0 425 300 64 19 chr15 35366231 35366498 -66014023 + L1ME4a LINE L1 4735 5013 -1133 1264 190 212 37 chr15 35367030 35367435 -66013086 - MLT1D LTR MaLR -8 497 22 445 234 7 43 chr15 35367491 35367632 -66012889 + L1ME4a LINE L1 5691 5826 -295 290 115 39 19 chr15 35367641 35367693 -66012828 - MLT1G LTR MaLR 0 590 538 3162 196 32 7 chr15 35367695 35368379 -66012142 + L1MC4a LINE L1 7108 7808 0 5131 154 25 10 chr15 35368383 35369309 -66011212 + L1MA7 LINE L1 5352 6291 0 602 214 18 48 chr15 35369315 35369483 -66011038 - MLT1G LTR MaLR -39 551 389 1145 183 195 53 chr15 35369585 35369979 -66010542 - MLT1C LTR MaLR 0 467 18 692 262 59 142 chr15 35369991 35370281 -66010240 - MLT1G LTR MaLR -266 301 39 240 301 35 44 chr15 35370347 35370576 -66009945 + L1ME4a LINE L1 5839 6065 -56 1954 133 16 16 chr15 35372682 35372991 -66007530 - AluJo SINE Alu -3 309 1 312 292 115 8 chr15 35373300 35373430 -66007091 - MIR SINE MIR 0 262 119 754 221 64 60 chr15 35373831 35374080 -66006441 - MIR SINE MIR 0 262 13 1642 166 7 42 chr15 35374281 35374588 -66005933 - AluJo SINE Alu -8 304 9 3728 163 28 45 chr15 35374872 35375671 -66004850 + LTR1 LTR ERV1 1 785 0 5710 182 75 34 chr15 35375752 35376445 -66004076 - Charlie1a DNA MER1_type -1309 1452 789 2765 13 0 0 chr15 35376445 35376747 -66003774 + AluY SINE Alu 1 302 -9 5710 182 75 34 chr15 35376747 35377446 -66003075 - Charlie1a DNA MER1_type -1972 789 2 430 187 0 0 chr15 35378390 35378465 -66002056 + MER33 DNA MER1_type 8 82 -242 198 231 256 34 chr15 35379025 35379142 -66001379 - MIR SINE MIR 0 262 120 2028 119 3 7 chr15 35379756 35380042 -66000479 - AluJb SINE Alu -27 285 1 2276 95 0 0 chr15 35380044 35380338 -66000183 - AluSx SINE Alu -18 294 1 267 95 0 24 chr15 35381083 35381125 -65999396 + FLAM SINE Alu 86 126 -7 1226 229 32 38 chr15 35381129 35381470 -65999051 + L1ME1 LINE L1 5810 6148 -18 455 303 35 42 chr15 35381505 35381648 -65998873 + L1ME1 LINE L1 4510 4652 -1494 1950 138 28 0 chr15 35381648 35381937 -65998584 + AluSx SINE Alu 1 297 -15 455 303 35 42 chr15 35381937 35382077 -65998444 + L1ME1 LINE L1 4652 4791 -1355 225 297 66 0 chr15 35382104 35382195 -65998326 + LTR67 LTR ERVL 124 220 -337 1241 160 0 5 chr15 35382484 35382678 -65997843 - AluJo SINE Alu -33 279 87 1521 134 150 13 chr15 35382995 35383351 -65997170 + MSTA LTR MaLR 1 428 0 491 112 0 37 chr15 35383568 35383675 -65996846 + (GGGA)n Simple_repeat Simple_repeat 2 104 0 1903 93 0 30 chr15 35384380 35384650 -65995871 - AluSx SINE Alu -15 297 36 238 292 298 18 chr15 35384805 35384973 -65995548 - L3 LINE CR1 -226 1351 1137 22 0 0 0 chr15 35385868 35385890 -65994631 + AT_rich Low_complexity Low_complexity 1 22 0 298 208 96 24 chr15 35386027 35386152 -65994369 + HAL1 LINE L1 2060 2193 -314 22 70 0 0 chr15 35386270 35386313 -65994208 + AT_rich Low_complexity Low_complexity 1 43 0 450 283 59 87 chr15 35386347 35386704 -65993817 + L1ME4a LINE L1 5032 5378 -768 234 292 42 42 chr15 35386741 35386861 -65993660 + L1ME4a LINE L1 5956 6075 -46 231 201 76 83 chr15 35386878 35387022 -65993499 - L1ME4a LINE L1 -12 6109 5967 2357 54 17 7 chr15 35387693 35387988 -65992533 + AluY SINE Alu 1 298 -13 246 175 18 0 chr15 35388131 35388188 -65992333 + L1ME1 LINE L1 4981 5038 -1108 957 108 8 0 chr15 35388210 35388339 -65992182 - AluSq/x SINE Alu -183 130 1 3505 201 80 20 chr15 35388339 35389430 -65991091 + L1ME1 LINE L1 5023 6158 -8 452 269 154 50 chr15 35389492 35389771 -65990750 - L1ME4a LINE L1 -2177 5631 5324 390 284 125 11 chr15 35390450 35390626 -65989895 + MIR SINE MIR 16 211 -51 1284 237 103 13 chr15 35390994 35391458 -65989063 + L2 LINE L2 2201 2896 -417 327 123 123 0 chr15 35391662 35391727 -65988794 + MLT1K LTR MaLR 514 586 -2 1223 118 0 17 chr15 35392194 35392372 -65988149 - AluSg/x SINE Alu -1 311 137 810 286 165 16 chr15 35393007 35393370 -65987151 + L2 LINE L2 2896 3312 -1 2061 138 47 89 chr15 35394137 35394376 -65986145 - L1MD1 LINE L1 0 6242 6004 472 294 73 25 chr15 35394376 35394607 -65985914 - L1MB5 LINE L1 -145 6029 5784 1323 171 120 47 chr15 35394607 35394881 -65985640 - AluJb SINE Alu -8 294 1 472 294 73 25 chr15 35394881 35394894 -65985627 - L1MB5 LINE L1 -390 5784 5773 4505 85 4 2 chr15 35395869 35396422 -65984099 + MER41A LTR ERV1 1 554 0 1730 140 189 0 chr15 35396969 35397276 -65983245 - MER47A DNA MER2_type 0 366 2 364 303 99 1 chr15 35398003 35398114 -65982407 - MER5A DNA MER1_type 0 189 55 2004 140 0 32 chr15 35398114 35398422 -65982099 - AluSx SINE Alu -14 298 1 364 303 99 1 chr15 35398422 35398433 -65982088 - MER5A DNA MER1_type -134 55 46 1839 100 115 0 chr15 35398603 35398872 -65981649 - AluSq SINE Alu -13 300 1 333 310 0 0 chr15 35399708 35399795 -65980726 - LTR67 LTR ERVL -61 496 410 233 290 14 0 chr15 35400010 35400079 -65980442 - LTR67 LTR ERVL -377 180 111 435 347 23 32 chr15 35400238 35400454 -65980067 + MLT1K LTR MaLR 127 340 -248 2817 197 70 8 chr15 35400679 35401289 -65979232 - MER99 DNA DNA -179 649 2 313 263 88 44 chr15 35401328 35401488 -65979033 + L2 LINE L2 2957 3123 -190 295 270 45 11 chr15 35401517 35401606 -65978915 + MIR3 SINE MIR 67 158 -50 239 293 0 61 chr15 35401616 35401698 -65978823 + MER5B DNA MER1_type 15 91 -87 335 306 160 0 chr15 35401704 35401848 -65978673 - MER5A DNA MER1_type -6 183 17 394 282 99 11 chr15 35402948 35403129 -65977392 - MIR SINE MIR -44 218 22 1337 150 4 39 chr15 35403642 35403876 -65976645 - AluJb SINE Alu 0 312 87 380 319 98 12 chr15 35403995 35404158 -65976363 - MER5A DNA MER1_type -4 185 9 213 39 0 0 chr15 35404579 35404605 -65975916 + (CA)n Simple_repeat Simple_repeat 1 26 0 1054 132 70 9 chr15 35405240 35405445 -65975076 - LTR47A LTR ERVL -8 444 234 427 289 53 7 chr15 35406165 35406317 -65974204 + MIR3 SINE MIR 49 207 -1 219 181 111 83 chr15 35406598 35406670 -65973851 + MIR3 SINE MIR 95 168 -40 2552 45 3 3 chr15 35407057 35407366 -65973155 + AluY SINE Alu 1 309 -2 2588 36 3 3 chr15 35407742 35408047 -65972474 + AluY SINE Alu 1 305 -6 1965 90 30 0 chr15 35408060 35408327 -65972194 + L1PA12 LINE L1 5894 6168 0 233 259 35 0 chr15 35408366 35408424 -65972097 + MIR SINE MIR 91 150 -58 618 116 5 3 chr15 35408772 35408992 -65971529 + AluJo SINE Alu 1 277 -35 687 207 21 52 chr15 35409024 35409217 -65971304 - HAL1 LINE L1 -1501 1006 820 262 297 30 11 chr15 35409588 35409692 -65970829 + MIR SINE MIR 60 162 -56 302 258 38 82 chr15 35410467 35410626 -65969895 - HAL1 LINE L1 -112 2395 2244 201 147 0 0 chr15 35411026 35411060 -65969461 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 649 179 30 167 chr15 35411073 35411307 -65969214 - HAL1 LINE L1 -2302 205 4 320 291 118 9 chr15 35411513 35411710 -65968811 - MLT1K LTR MaLR -10 605 366 888 154 26 26 chr15 35412583 35412739 -65967782 - MER20 DNA MER1_type 0 219 64 188 197 16 98 chr15 35413693 35413754 -65966767 + L2 LINE L2 1238 1293 -2021 239 250 125 0 chr15 35414546 35414626 -65965895 - MIR SINE MIR -8 254 165 484 302 65 31 chr15 35414632 35414923 -65965598 - LTR16C LTR ERVL -9 482 182 649 257 13 13 chr15 35415035 35415187 -65965334 - MIR SINE MIR -103 159 8 2411 99 0 3 chr15 35419774 35420087 -65960434 - AluSx SINE Alu 0 312 1 232 294 35 12 chr15 35420093 35420178 -65960343 - L2 LINE L2 -12 3301 3215 250 309 53 49 chr15 35421114 35421379 -65959142 + L1PB2 LINE L1 5663 5928 -223 * 2153 184 30 26 chr15 35421149 35421615 -65958906 + L1MB7 LINE L1 5698 6165 -19 480 302 84 50 chr15 35421841 35422139 -65958382 + MER102b DNA MER1_type 1 308 -33 437 263 17 8 chr15 35422345 35422463 -65958058 - MIR SINE MIR -134 128 10 29 0 0 0 chr15 35423783 35423812 -65956709 + AT_rich Low_complexity Low_complexity 1 29 0 239 204 0 0 chr15 35424090 35424134 -65956387 + L2 LINE L2 1879 1922 -1392 1406 156 82 27 chr15 35424136 35424441 -65956080 - MER33 DNA MER1_type -10 314 1 443 295 113 17 chr15 35424443 35424745 -65955776 + L2 LINE L2 1959 2289 -1025 1139 294 123 20 chr15 35424768 35425247 -65955274 + L2 LINE L2 2780 3313 0 198 103 0 0 chr15 35425886 35425915 -65954606 + (TG)n Simple_repeat Simple_repeat 2 30 0 1062 56 6 81 chr15 35426326 35426371 -65954150 + L1PA12 LINE L1 6021 6068 -100 2437 55 17 0 chr15 35426371 35426663 -65953858 + AluY SINE Alu 1 297 -14 1062 56 6 81 chr15 35426663 35426777 -65953744 + L1PA12 LINE L1 6068 6168 0 873 157 19 127 chr15 35427563 35427709 -65952812 - L1MEc LINE L1 -4011 2710 2604 757 230 0 0 chr15 35427709 35427835 -65952686 - FLAM_A SINE Alu -7 126 1 873 157 19 127 chr15 35427835 35427956 -65952565 - L1MEc LINE L1 -4117 2604 2472 1501 134 4 42 chr15 35427957 35428146 -65952375 - MER46A DNA MER2_type -2496 235 55 2524 61 0 0 chr15 35428146 35428440 -65952081 + AluY SINE Alu 5 298 -13 1501 134 4 42 chr15 35428440 35428489 -65952032 - MER46A DNA MER2_type -2676 55 6 643 204 58 6 chr15 35428494 35428666 -65951855 - L1MEc LINE L1 -4248 2473 2293 2179 149 34 45 chr15 35428666 35429220 -65951301 + MLT2A2 LTR ERVL 1 554 0 1875 144 31 7 chr15 35429249 35429540 -65950981 - AluJb SINE Alu -12 300 3 318 145 32 0 chr15 35429551 35429613 -65950908 - L1MEc LINE L1 -3935 2605 2542 1556 283 29 15 chr15 35429613 35430140 -65950381 - L1MEc LINE L1 -4462 2259 1726 548 263 61 57 chr15 35430217 35430479 -65950042 - L1ME LINE L1 -297 5824 5562 438 296 89 37 chr15 35430635 35431172 -65949349 - L1MEc LINE L1 -4893 1637 1073 773 300 22 45 chr15 35431329 35431596 -65948925 + MIR SINE MIR 2 262 0 4019 148 50 8 chr15 35432205 35432919 -65947602 + L1MA8 LINE L1 5543 6286 -5 1831 154 0 45 chr15 35433280 35433591 -65946930 + AluJo SINE Alu 1 297 -15 183 186 0 0 chr15 35434190 35434233 -65946288 + GA-rich Low_complexity Low_complexity 2 44 0 2158 200 91 2 chr15 35438349 35438809 -65941712 + MLT1F LTR MaLR 10 510 -32 292 314 99 0 chr15 35438836 35438957 -65941564 + MIR SINE MIR 119 251 -11 1195 288 135 35 chr15 35439542 35440236 -65940285 + L2 LINE L2 2020 2783 -531 261 155 69 17 chr15 35440290 35440348 -65940173 - MER91 DNA MER1_type -93 97 37 2483 152 31 7 chr15 35440433 35440847 -65939674 + MSTB LTR MaLR 1 424 -2 458 303 185 29 chr15 35440874 35441188 -65939333 + L2 LINE L2 2946 3308 -5 279 238 74 41 chr15 35441390 35441430 -65939091 - HAL1b LINE L1 0 6048 6011 1807 171 17 7 chr15 35441430 35441723 -65938798 + AluJo SINE Alu 1 296 -16 279 238 74 41 chr15 35441723 35441857 -65938664 - HAL1b LINE L1 -37 6011 1191 34 24 0 0 chr15 35441991 35442032 -65938489 + AT_rich Low_complexity Low_complexity 1 41 0 253 326 0 0 chr15 35442058 35442150 -65938371 - L1MC/D LINE L1 -2009 5799 5708 234 234 47 47 chr15 35442205 35442312 -65938209 - L1MC/D LINE L1 -2256 5552 5446 441 308 124 52 chr15 35443382 35443477 -65937044 + L1ME3 LINE L1 5447 5534 -628 3843 154 79 6 chr15 35443477 35444146 -65936375 - MER72 LTR ERV1 0 722 5 441 308 124 52 chr15 35444146 35444201 -65936320 + L1ME3 LINE L1 5534 5584 -578 454 108 81 0 chr15 35444201 35444275 -65936246 + MADE1 DNA Mariner 1 80 0 441 308 124 52 chr15 35444275 35444509 -65936012 + L1ME3 LINE L1 5584 5860 -302 652 291 44 0 chr15 35445498 35445680 -65934841 - MIR SINE MIR -71 191 2 39 0 0 0 chr15 35446468 35446507 -65934014 + AT_rich Low_complexity Low_complexity 1 39 0 288 326 145 55 chr15 35446734 35447133 -65933388 - L2 LINE L2 -1 3271 2837 805 319 71 48 chr15 35447717 35448460 -65932061 + L2 LINE L2 2062 2821 -493 315 122 0 0 chr15 35448486 35448535 -65931986 + (CA)n Simple_repeat Simple_repeat 1 49 0 2016 112 0 0 chr15 35448556 35448859 -65931662 + L1MB8 LINE L1 5324 5626 -552 1600 202 46 78 chr15 35448859 35449060 -65931461 - MLT1D LTR MaLR 0 505 299 1186 151 122 0 chr15 35449060 35449162 -65931359 + MER30 DNA MER1_type 1 89 -141 333 0 0 0 chr15 35449162 35449199 -65931322 + (CA)n Simple_repeat Simple_repeat 2 38 0 1186 151 122 0 chr15 35449199 35449301 -65931220 + MER30 DNA MER1_type 89 230 0 1600 202 46 78 chr15 35449301 35449599 -65930922 - MLT1D LTR MaLR -206 299 22 2583 176 18 20 chr15 35449641 35450192 -65930329 + L1MB8 LINE L1 5624 6173 -5 261 405 64 0 chr15 35450813 35450986 -65929535 + L3b LINE CR1 1260 1443 -140 3390 99 40 18 chr15 35451021 35451530 -65928991 + L1MA3 LINE L1 5725 6250 -55 2322 91 3 7 chr15 35451530 35451828 -65928693 - AluSp SINE Alu -16 297 1 3390 99 40 18 chr15 35451828 35451886 -65928635 + L1MA3 LINE L1 6250 6305 0 561 260 126 59 chr15 35451932 35452320 -65928201 - MLT1J LTR MaLR -38 473 60 1977 144 3 3 chr15 35452321 35452619 -65927902 + AluSx SINE Alu 1 298 -14 2168 158 89 3 chr15 35452716 35453108 -65927413 + MSTB LTR MaLR 1 426 0 224 179 26 0 chr15 35453328 35453367 -65927154 + L2 LINE L2 3220 3259 -13 221 266 76 51 chr15 35453675 35453833 -65926688 + L2 LINE L2 2690 2851 -463 252 330 17 25 chr15 35453924 35454042 -65926479 + L2 LINE L2 2948 3064 -208 207 194 0 0 chr15 35454110 35454146 -65926375 + (TAG)n Simple_repeat Simple_repeat 2 37 0 365 226 129 0 chr15 35454146 35454239 -65926282 - MIR SINE MIR 0 262 158 303 411 24 0 chr15 35454255 35454379 -65926142 + L2 LINE L2 3134 3260 -12 688 152 14 51 chr15 35454381 35454519 -65926002 + FLAM_C SINE Alu 1 133 0 3875 52 0 0 chr15 35455029 35455534 -65924987 + L1PA5 LINE L1 3827 4331 -1815 7003 66 0 3 chr15 35455536 35457153 -65923368 + L1PA5 LINE L1 4532 6153 -1 298 323 125 8 chr15 35457411 35457557 -65922964 - MIR SINE MIR -76 132 4 199 328 15 0 chr15 35457740 35457807 -65922714 - MIR SINE MIR 0 262 195 1782 146 89 70 chr15 35457809 35457829 -65922692 + MLT1C LTR MaLR 1 19 -448 180 0 0 0 chr15 35457829 35457849 -65922672 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 1782 146 89 70 chr15 35457849 35458286 -65922235 + MLT1C LTR MaLR 19 467 0 362 78 0 94 chr15 35458538 35458602 -65921919 + MLT1A1 LTR MaLR 1 58 -307 2071 130 87 10 chr15 35458605 35458996 -65921525 - MSTA LTR MaLR -2 426 6 1762 141 6 52 chr15 35459001 35459327 -65921194 + MLT1A1 LTR MaLR 55 365 0 488 260 93 7 chr15 35460694 35460844 -65919677 + MER5A DNA MER1_type 1 163 -26 509 257 9 0 chr15 35461360 35461473 -65919048 + MER81 DNA DNA 1 114 0 612 220 29 29 chr15 35461988 35462161 -65918360 - MER5B DNA MER1_type -1 177 5 304 233 271 8 chr15 35462169 35462302 -65918219 - L2 LINE L2 -254 3059 2892 318 235 174 0 chr15 35462304 35462402 -65918119 + L2 LINE L2 3196 3310 -3 458 314 112 5 chr15 35462410 35462598 -65917923 - L2 LINE L2 -420 2894 2687 596 169 25 8 chr15 35462598 35462716 -65917805 + L1MDa LINE L1 18 137 -6403 732 165 41 41 chr15 35462716 35462886 -65917635 + LTR8 LTR ERV1 1 170 -521 408 285 209 6 chr15 35462886 35463044 -65917477 + L1MDa LINE L1 813 1002 -5538 5260 223 82 18 chr15 35463053 35463973 -65916548 + L1MDa LINE L1 1703 2562 -3978 2259 115 10 0 chr15 35463973 35464278 -65916243 + AluSx SINE Alu 1 308 -4 5260 223 82 18 chr15 35464278 35464310 -65916211 + L1MDa LINE L1 2562 2591 -3949 2317 122 97 8 chr15 35464310 35464703 -65915818 - MSTA LTR MaLR 0 428 1 5260 223 82 18 chr15 35464703 35466298 -65914223 + L1MDa LINE L1 2591 4434 -2106 3028 158 65 17 chr15 35466298 35466872 -65913649 - MER7C DNA MER2_type 0 602 2 5260 223 82 18 chr15 35466872 35466972 -65913549 + L1MDa LINE L1 4434 4526 -2014 1908 124 20 32 chr15 35466976 35467322 -65913199 + L1MD1 LINE L1 5901 6242 0 597 328 40 66 chr15 35467322 35467670 -65912851 - L2 LINE L2 -612 2702 2364 357 248 9 9 chr15 35468751 35468864 -65911657 - MER117 DNA MER1_type -28 169 57 380 305 29 9 chr15 35469271 35469376 -65911145 + L2 LINE L2 3195 3301 -12 4159 136 28 11 chr15 35469378 35470083 -65910438 + L1MB2 LINE L1 5448 6164 -7 1212 164 9 18 chr15 35470137 35470357 -65910164 + MER20 DNA MER1_type 2 219 0 201 121 0 0 chr15 35470428 35470461 -65910060 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1774 144 10 55 chr15 35471265 35471577 -65908944 + AluJo SINE Alu 1 298 -14 356 262 78 14 chr15 35472166 35472307 -65908214 + LTR67 LTR ERVL 400 549 -8 724 260 41 12 chr15 35472367 35472609 -65907912 - MIR SINE MIR 0 262 14 184 280 197 8 chr15 35472720 35472852 -65907669 + L2 LINE L2 3051 3207 -106 1525 199 161 17 chr15 35472857 35473329 -65907192 - MLT1F LTR MaLR 0 542 3 1895 158 24 0 chr15 35473905 35474196 -65906325 + AluJb SINE Alu 1 298 -14 2357 86 3 10 chr15 35474197 35474510 -65906011 + AluY SINE Alu 1 311 0 240 266 66 113 chr15 35474796 35474943 -65905578 + L1MEd LINE L1 535 687 -5432 1630 193 11 0 chr15 35474943 35475213 -65905308 + AluJb SINE Alu 1 273 -39 240 266 66 113 chr15 35475213 35475253 -65905268 + L1MEd LINE L1 687 727 -5392 2184 142 0 0 chr15 35475253 35475556 -65904965 - AluSx SINE Alu -9 303 1 240 266 66 113 chr15 35475556 35475686 -65904835 + L1MEd LINE L1 727 838 -5281 2124 123 18 26 chr15 35475788 35476170 -65904351 + L1MB2 LINE L1 5257 5635 -536 1961 121 21 12 chr15 35476170 35476493 -65904028 + L1MB2 LINE L1 5837 6169 -2 2232 104 3 0 chr15 35477781 35478070 -65902451 + AluSc SINE Alu 3 292 -17 5471 119 119 46 chr15 35479031 35479563 -65900958 + Tigger3b DNA MER2_type 1 493 -2535 1675 74 16 85 chr15 35479563 35479821 -65900700 - AluY SINE Alu -2 309 70 5471 119 119 46 chr15 35479821 35480434 -65900087 + Tigger3b DNA MER2_type 493 1230 -1 4841 160 6 50 chr15 35480820 35482211 -65898310 + L1PB4 LINE L1 4809 6144 -12 1804 249 106 22 chr15 35482296 35483099 -65897422 + L1MC4a LINE L1 5577 6446 -1362 381 121 30 0 chr15 35483219 35483285 -65897236 + L1PA16 LINE L1 6089 6156 -10 301 125 32 21 chr15 35485441 35485529 -65894992 + AluSp/q SINE Alu 252 298 -5 204 40 0 0 chr15 35485662 35485687 -65894834 + (A)n Simple_repeat Simple_repeat 1 25 0 201 310 0 23 chr15 35486075 35486162 -65894359 + T-rich Low_complexity Low_complexity 5 89 0 28 0 0 0 chr15 35486163 35486191 -65894330 + AT_rich Low_complexity Low_complexity 1 28 0 2171 154 95 31 chr15 35486413 35486866 -65893655 - MLT1D LTR MaLR -5 500 19 1782 223 133 21 chr15 35487094 35487627 -65892894 + MLT1E LTR MaLR 1 593 0 1722 153 183 16 chr15 35489055 35489421 -65891100 - MSTA LTR MaLR 0 428 2 495 0 0 0 chr15 35489421 35489476 -65891045 + (TG)n Simple_repeat Simple_repeat 2 56 0 650 307 16 0 chr15 35489633 35489825 -65890696 - MIR SINE MIR -49 213 19 2342 98 7 0 chr15 35491271 35491578 -65888943 + AluSp SINE Alu 1 309 -4 196 313 182 0 chr15 35492091 35492190 -65888331 + MIR SINE MIR 30 146 -62 250 175 25 0 chr15 35492430 35492510 -65888011 + (TA)n Simple_repeat Simple_repeat 2 83 0 894 146 0 127 chr15 35492510 35492715 -65887806 + FRAM SINE Alu 1 176 0 772 163 180 22 chr15 35493167 35493345 -65887176 + AluJb SINE Alu 96 301 -11 390 139 0 0 chr15 35493347 35493419 -65887102 + (GA)n Simple_repeat Simple_repeat 1 72 0 2086 142 3 3 chr15 35494060 35494370 -65886151 - AluSx SINE Alu -2 310 1 4203 130 83 8 chr15 35494468 35494605 -65885916 - L1MA9 LINE L1 0 6312 6187 351 0 0 0 chr15 35494605 35494644 -65885877 + (TG)n Simple_repeat Simple_repeat 2 40 0 4203 130 83 8 chr15 35494644 35494981 -65885540 - L1MA9 LINE L1 -125 6187 5877 243 0 0 0 chr15 35494981 35495008 -65885513 + (TG)n Simple_repeat Simple_repeat 2 28 0 4203 130 83 8 chr15 35495008 35495269 -65885252 - L1MA9 LINE L1 -435 5877 5521 431 278 35 7 chr15 35495636 35495780 -65884741 - MIR3 SINE MIR -36 172 25 387 331 29 33 chr15 35496258 35496500 -65884021 + L2 LINE L2 466 706 -2608 343 340 127 32 chr15 35496650 35497604 -65882917 + L2 LINE L2 1807 2850 -464 351 338 51 25 chr15 35497695 35497852 -65882669 + L2 LINE L2 3112 3272 0 666 182 42 14 chr15 35499895 35500038 -65880483 - L1MA10 LINE L1 -7 6327 6181 563 219 81 136 chr15 35500953 35501474 -65879047 - MLT1J LTR MaLR -19 492 1 2308 105 3 0 chr15 35502460 35502765 -65877756 + AluSp SINE Alu 1 306 -7 206 307 118 31 chr15 35502859 35502986 -65877535 + MIR3 SINE MIR 20 157 -51 489 321 16 21 chr15 35503535 35503725 -65876796 - MER5A DNA MER1_type 0 189 1 31 0 0 0 chr15 35504095 35504126 -65876395 + AT_rich Low_complexity Low_complexity 1 31 0 1262 192 91 113 chr15 35504312 35504782 -65875739 + MER34B LTR ERV1 1 495 -90 1322 166 72 97 chr15 35504782 35505102 -65875419 - AluJo SINE Alu 0 312 1 1262 192 91 113 chr15 35505102 35505192 -65875329 + MER34B LTR ERV1 495 585 0 581 182 27 0 chr15 35505486 35505596 -65874925 + MER34B LTR ERV1 161 273 -292 2123 131 3 0 chr15 35505774 35506131 -65874390 + AluSp SINE Alu 1 358 0 623 232 32 0 chr15 35506220 35506345 -65874176 + L2 LINE L2 3185 3313 0 297 198 161 0 chr15 35506465 35506546 -65873975 - MER63A DNA MER1_type -36 174 81 363 165 101 13 chr15 35506630 35506709 -65873812 - MER63A DNA MER1_type 0 86 1 22 35 0 0 chr15 35507073 35507102 -65873419 + AT_rich Low_complexity Low_complexity 1 29 0 1294 201 84 4 chr15 35507871 35508144 -65872377 - AluJo SINE Alu -16 296 2 1003 151 0 24 chr15 35508208 35508374 -65872147 + FRAM SINE Alu 8 169 -7 193 182 91 0 chr15 35508573 35508617 -65871904 - L2 LINE L2 -15 3298 3251 1672 192 69 65 chr15 35508952 35509416 -65871105 + MLT1C LTR MaLR 1 466 -1 6978 66 19 55 chr15 35509604 35511609 -65868912 - SVA Other Other -520 1386 2 234 91 0 0 chr15 35511614 35511647 -65868874 + (AGGGGG)n Simple_repeat Simple_repeat 2 34 0 1461 174 18 82 chr15 35512381 35512709 -65867812 - AluJo SINE Alu -5 307 1 499 242 92 0 chr15 35513099 35513219 -65867302 + FLAM_A SINE Alu 1 131 -2 1242 7 0 0 chr15 35513933 35514068 -65866453 - AluYb8 SINE Alu -5 313 179 25 0 0 0 chr15 35514070 35514095 -65866426 + AT_rich Low_complexity Low_complexity 1 25 0 393 278 0 0 chr15 35515396 35515486 -65865035 + MER5A DNA MER1_type 9 98 -91 1358 167 188 0 chr15 35515486 35515768 -65864753 - ERVL LTR ERVL -653 5111 4777 591 316 69 48 chr15 35515962 35516339 -65864182 + L3 LINE CR1 297 681 -896 29 84 0 0 chr15 35516418 35516489 -65864032 + AT_rich Low_complexity Low_complexity 1 71 0 402 282 98 63 chr15 35518064 35518125 -65862396 + MER5A DNA MER1_type 10 67 -122 2053 136 0 32 chr15 35518125 35518433 -65862088 + AluSx SINE Alu 1 298 -14 402 282 98 63 chr15 35518433 35518545 -65861976 + MER5A DNA MER1_type 67 189 0 1723 140 189 0 chr15 35519272 35519579 -65860942 + MER47A DNA MER2_type 2 366 0 4331 87 2 2 chr15 35520121 35520675 -65859846 - MER41A LTR ERV1 0 554 1 459 294 73 25 chr15 35521649 35521662 -65858859 + L1MB5 LINE L1 5773 5784 -390 1210 171 120 51 chr15 35521662 35521937 -65858584 + AluJb SINE Alu 1 294 -8 459 294 73 25 chr15 35521937 35522168 -65858353 + L1MB5 LINE L1 5784 6029 -145 * 2049 138 47 89 chr15 35521956 35522407 -65858114 + L1MD1 LINE L1 5811 6242 0 696 292 163 14 chr15 35523174 35523537 -65856984 - L2 LINE L2 -1 3312 2896 1209 124 0 17 chr15 35524172 35524350 -65856171 + AluSg/x SINE Alu 135 309 -1 693 292 81 72 chr15 35524817 35525273 -65855248 - MLT1K LTR MaLR -2 586 127 236 290 14 0 chr15 35525432 35525501 -65855020 + LTR67 LTR ERVL 111 180 -377 330 310 0 0 chr15 35525716 35525803 -65854718 + LTR67 LTR ERVL 410 496 -61 1851 100 115 0 chr15 35526639 35526908 -65853613 + AluSq SINE Alu 1 300 -13 2098 127 7 0 chr15 35527089 35527412 -65853109 + AluSx SINE Alu 1 325 0 260 229 62 10 chr15 35527413 35527509 -65853012 + L1ME4a LINE L1 5977 6077 -44 2094 133 3 13 chr15 35528668 35528983 -65851538 + AluJb SINE Alu 1 312 0 2849 138 48 84 chr15 35529223 35529596 -65850925 + L1MB7 LINE L1 5567 5952 -232 1920 183 0 0 chr15 35529596 35529908 -65850613 + AluJb SINE Alu 1 312 0 2849 138 48 84 chr15 35529908 35530098 -65850423 + L1MB7 LINE L1 5952 6108 -76 2353 74 0 0 chr15 35530098 35530410 -65850111 + AluY SINE Alu 1 312 0 2849 138 48 84 chr15 35530410 35530483 -65850038 + L1MB7 LINE L1 6108 6182 -2 2344 92 16 3 chr15 35530640 35530943 -65849578 - AluSx SINE Alu -5 307 1 1739 208 22 22 chr15 35531457 35531828 -65848693 - MLT1A2 LTR MaLR 0 374 4 2153 109 0 22 chr15 35531926 35532238 -65848283 + AluSx SINE Alu 1 305 -7 2252 95 0 20 chr15 35533333 35533638 -65846883 + AluSq SINE Alu 1 299 -14 1970 139 17 0 chr15 35533675 35533969 -65846552 - AluSx SINE Alu -13 299 1 2405 80 10 0 chr15 35534099 35534398 -65846123 + AluSq SINE Alu 1 302 -11 216 182 0 0 chr15 35534758 35534802 -65845719 + (TA)n Simple_repeat Simple_repeat 2 45 0 180 0 0 0 chr15 35534998 35535018 -65845503 + (CA)n Simple_repeat Simple_repeat 2 21 0 781 161 141 29 chr15 35538875 35539098 -65841423 - MLT1G3 LTR MaLR -180 410 149 695 53 0 11 chr15 35539118 35539213 -65841308 - HY3 scRNA scRNA -2 99 6 719 220 86 53 chr15 35539224 35539433 -65841088 - MLT1G1 LTR MaLR -379 216 1 2083 136 10 0 chr15 35539480 35539782 -65840739 + AluSx SINE Alu 1 305 -7 1434 170 11 97 chr15 35539919 35540120 -65840401 - MLT1A1 LTR MaLR -27 338 182 822 174 0 8 chr15 35540120 35540252 -65840269 - FLAM_A SINE Alu -1 132 2 1434 170 11 97 chr15 35540252 35540420 -65840101 - MLT1A1 LTR MaLR -183 182 1 2265 184 9 66 chr15 35540727 35541270 -65839251 + MLT2B1 LTR ERVL 1 512 -8 22 0 0 0 chr15 35541278 35541300 -65839221 + AT_rich Low_complexity Low_complexity 1 22 0 641 268 48 88 chr15 35541851 35542269 -65838252 + MLT1I LTR MaLR 5 405 -4 222 37 0 0 chr15 35542691 35542718 -65837803 + (TTG)n Simple_repeat Simple_repeat 1 27 0 215 152 22 0 chr15 35542817 35542863 -65837658 + GA-rich Low_complexity Low_complexity 2 48 0 306 253 133 40 chr15 35543314 35543464 -65837057 + MIR SINE MIR 85 248 -14 2003 176 0 0 chr15 35544078 35544390 -65836131 - AluJb SINE Alu 0 312 1 2087 110 14 21 chr15 35544398 35544688 -65835833 - AluY SINE Alu -23 288 1 568 294 58 25 chr15 35544694 35545021 -65835500 - MARNA DNA Mariner -36 550 213 1471 187 37 55 chr15 35545257 35545452 -65835069 + L1M4 LINE L1 1535 1732 -4912 1908 108 6 94 chr15 35545452 35545794 -65834727 + AluSx SINE Alu 1 312 0 1471 187 37 55 chr15 35545794 35546001 -65834520 + L1M4 LINE L1 1732 2030 -4614 801 209 0 0 chr15 35546217 35546365 -65834156 - MER77 LTR ERV1 -457 148 1 288 136 0 68 chr15 35546370 35546429 -65834092 + L1MC5 LINE L1 7529 7583 -378 1980 225 14 41 chr15 35546473 35547063 -65833458 - L1ME1 LINE L1 -5 6161 5588 1166 216 40 21 chr15 35547059 35547323 -65833198 + L1ME LINE L1 4985 5242 -924 * 2341 98 0 0 chr15 35547323 35547620 -65832901 + AluSg SINE Alu 1 297 -13 1166 216 40 21 chr15 35547620 35547951 -65832570 + L1ME LINE L1 5242 5590 -576 447 254 102 6 chr15 35547968 35548145 -65832376 - L1MC4 LINE L1 -1 8041 7848 233 297 0 0 chr15 35548158 35548232 -65832289 - L1MC4 LINE L1 -279 7763 7690 337 228 86 63 chr15 35548260 35548319 -65832202 + L1MC5 LINE L1 7600 7656 -305 1649 123 76 22 chr15 35548319 35548595 -65831926 - AluJo SINE Alu -21 291 1 337 228 86 63 chr15 35548595 35548803 -65831718 + L1MC5 LINE L1 7656 7873 -88 493 306 185 21 chr15 35548872 35549212 -65831309 - L2 LINE L2 -568 2746 2351 2200 71 7 10 chr15 35549833 35550128 -65830393 + AluSc SINE Alu 1 294 -15 24 32 0 0 chr15 35550535 35550566 -65829955 + GC_rich Low_complexity Low_complexity 1 31 0 1018 89 272 0 chr15 35551302 35551482 -65829039 + MER30 DNA MER1_type 2 230 0 1826 157 31 3 chr15 35551671 35551964 -65828557 - AluJo SINE Alu -11 301 1 418 182 0 26 chr15 35552109 35552186 -65828335 - L2 LINE L2 -50 3263 3189 234 178 22 0 chr15 35552674 35552719 -65827802 - L2 LINE L2 -1 3271 3226 2040 109 14 0 chr15 35552758 35553042 -65827479 - AluSx SINE Alu -24 288 1 594 259 89 4 chr15 35553044 35553280 -65827241 - MER46C DNA MER2_type -15 323 68 377 291 120 14 chr15 35553484 35553759 -65826762 - L1ME1 LINE L1 -2191 5617 5314 552 273 115 40 chr15 35554320 35554598 -65825923 + L2 LINE L2 3013 3311 -2 402 282 135 0 chr15 35554972 35555130 -65825391 + MIR SINE MIR 6 182 -62 449 285 199 8 chr15 35555344 35555600 -65824921 + L2 LINE L2 3008 3312 -1 24 32 0 0 chr15 35555714 35555745 -65824776 + AT_rich Low_complexity Low_complexity 1 31 0 493 237 59 13 chr15 35556424 35556576 -65823945 - MER20B DNA MER1_type -618 165 7 21 71 0 0 chr15 35556947 35556989 -65823532 + AT_rich Low_complexity Low_complexity 1 42 0 2359 193 46 97 chr15 35557060 35557826 -65822695 - MER21B LTR ERV1 -124 739 13 245 256 0 13 chr15 35557914 35557992 -65822529 + L1ME LINE L1 5684 5760 -361 1040 195 19 5 chr15 35557995 35558205 -65822316 - MER20 DNA MER1_type -3 216 4 180 0 0 0 chr15 35559685 35559705 -65820816 + (T)n Simple_repeat Simple_repeat 1 20 0 1787 178 30 7 chr15 35560016 35560319 -65820202 + AluJo SINE Alu 2 311 -1 2548 47 0 7 chr15 35560769 35561069 -65819452 - AluY SINE Alu -13 298 1 826 152 8 0 chr15 35561484 35561616 -65818905 - FLAM_C SINE Alu 0 133 1 27 49 0 0 chr15 35561618 35561659 -65818862 + AT_rich Low_complexity Low_complexity 1 41 0 10464 115 22 13 chr15 35561694 35563410 -65817111 + Tigger1 DNA MER2_type 688 2418 0 548 287 153 18 chr15 35563838 35564120 -65816401 - L2 LINE L2 0 3313 2994 31 44 0 0 chr15 35566328 35566373 -65814148 + AT_rich Low_complexity Low_complexity 1 45 0 2058 124 23 3 chr15 35566650 35566956 -65813565 + AluSx SINE Alu 1 312 0 448 194 29 19 chr15 35567042 35567145 -65813376 + U13 snRNA snRNA 1 104 0 1057 120 0 7 chr15 35567514 35567691 -65812830 - AluSp SINE Alu 0 312 137 256 105 0 0 chr15 35568057 35568095 -65812426 + AluSp/q SINE Alu 198 235 -68 486 264 68 71 chr15 35568276 35568587 -65811934 - L1M4 LINE L1 -1334 4812 4503 1737 151 54 13 chr15 35568596 35568911 -65811610 - AluJo SINE Alu 0 328 2 2092 151 0 6 chr15 35569170 35569482 -65811039 - AluSg SINE Alu 0 310 1 204 200 0 0 chr15 35570265 35570310 -65810211 + A-rich Low_complexity Low_complexity 5 49 0 2188 122 0 3 chr15 35570596 35570890 -65809631 - AluSx SINE Alu -19 293 1 247 317 39 10 chr15 35571209 35571313 -65809208 + MIR SINE MIR 47 153 -109 1133 114 0 0 chr15 35571638 35571813 -65808708 - L1MA5A LINE L1 0 6297 6123 2337 97 0 0 chr15 35572341 35572640 -65807881 - AluSg SINE Alu -11 299 1 679 133 0 0 chr15 35573626 35573724 -65806797 + AluJ/FLAM SINE Alu 2 99 -213 619 296 160 30 chr15 35573731 35574069 -65806452 + L2 LINE L2 2921 3302 -11 257 193 0 0 chr15 35574404 35574461 -65806060 - L1MB5 LINE L1 -8 6166 6110 2222 95 3 7 chr15 35576218 35576523 -65803998 + AluY SINE Alu 1 304 -7 762 154 29 0 chr15 35577693 35577829 -65802692 + MER3 DNA MER1_type 5 144 -65 902 193 12 6 chr15 35578450 35578611 -65801910 + FRAM SINE Alu 2 163 -3 781 173 7 22 chr15 35578798 35578937 -65801584 - FRAM SINE Alu -18 158 22 918 207 25 0 chr15 35580720 35580918 -65799603 + MER20 DNA MER1_type 5 207 -12 2194 101 0 7 chr15 35581463 35581759 -65798762 - AluSq SINE Alu -19 294 1 1746 141 3 96 chr15 35582523 35582856 -65797665 + AluJb SINE Alu 1 302 0 276 197 66 26 chr15 35583020 35583096 -65797425 + L1ME4a LINE L1 5944 6022 -99 381 322 135 10 chr15 35584727 35584935 -65795586 + MIR SINE MIR 23 256 -6 280 185 136 0 chr15 35585707 35585788 -65794733 + L1ME LINE L1 5708 5799 -363 1988 74 0 19 chr15 35585904 35586173 -65794348 + L1PA8 LINE L1 5907 6170 -2 4205 101 3 15 chr15 35586247 35586902 -65793619 + L1MA3 LINE L1 5316 5962 -343 8405 82 12 2 chr15 35588178 35589397 -65791124 + L1P LINE L1 3700 4930 -1216 381 327 45 13 chr15 35590217 35590373 -65790148 - MIR SINE MIR -41 221 61 444 202 8 16 chr15 35590717 35590841 -65789680 + L1 LINE L1 2974 3096 -3050 * 6331 81 18 11 chr15 35590838 35591778 -65788743 + L1P LINE L1 3854 4800 -1346 2035 107 57 13 chr15 35592403 35592703 -65787818 - AluSp SINE Alu 0 313 1 242 337 81 12 chr15 35592903 35592989 -65787532 + L2 LINE L2 3160 3251 -21 3557 59 0 0 chr15 35593562 35594006 -65786515 + L1PA5 LINE L1 5698 6141 -13 249 326 41 20 chr15 35594045 35594143 -65786378 - L2 LINE L2 0 3272 3173 435 252 15 15 chr15 35594462 35594597 -65785924 + FRAM SINE Alu 36 170 -6 192 152 0 0 chr15 35596943 35596976 -65783545 + (TA)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr15 35597984 35598006 -65782515 + AT_rich Low_complexity Low_complexity 1 22 0 2463 78 0 0 chr15 35598470 35598776 -65781745 - AluY SINE Alu -5 306 1 635 276 87 0 chr15 35599036 35599232 -65781289 + MIR SINE MIR 29 241 -21 436 288 131 0 chr15 35599522 35599751 -65780770 + L1MC4a LINE L1 5672 5930 -1878 25 65 0 0 chr15 35599917 35599963 -65780558 + AT_rich Low_complexity Low_complexity 1 46 0 1597 165 9 73 chr15 35600219 35600358 -65780163 + AluJo SINE Alu 1 147 -165 1987 128 0 24 chr15 35600358 35600676 -65779845 + AluSx SINE Alu 1 311 0 1597 165 9 73 chr15 35600676 35600861 -65779660 + AluJo SINE Alu 147 306 -6 816 229 34 0 chr15 35600903 35601078 -65779443 - MER5A DNA MER1_type -8 181 1 1918 146 31 0 chr15 35601193 35601481 -65779040 + AluJb SINE Alu 1 297 -15 213 311 0 49 chr15 35602423 35602484 -65778037 + MIR SINE MIR 26 83 -125 471 335 88 13 chr15 35604204 35604431 -65776090 - MIR SINE MIR -8 254 11 371 283 0 19 chr15 35604944 35605050 -65775471 - MIR SINE MIR -80 182 79 503 174 55 0 chr15 35606006 35606166 -65774355 - AluSg/x SINE Alu 0 358 193 203 0 37 0 chr15 35606249 35606276 -65774245 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 1852 127 54 42 chr15 35606314 35606645 -65773876 - MER1B DNA MER1_type -1 336 2 850 93 36 0 chr15 35607725 35607864 -65772657 + MER30 DNA MER1_type 1 144 -86 890 171 0 0 chr15 35609823 35609969 -65770552 - FRAM SINE Alu -30 146 1 2325 84 7 0 chr15 35610214 35610500 -65770021 + AluSq SINE Alu 9 296 -17 2626 40 3 0 chr15 35611041 35611340 -65769181 - AluY SINE Alu -11 300 1 13457 74 5 7 chr15 35611667 35612564 -65767957 - L1PA7 LINE L1 0 6154 5257 2143 109 3 0 chr15 35612564 35612858 -65767663 - AluSp SINE Alu -18 295 1 13457 74 5 7 chr15 35612858 35614551 -65765970 - L1PA7 LINE L1 -897 5257 3565 1336 86 43 0 chr15 35614552 35614761 -65765760 + L1PA7 LINE L1 3333 3550 -2596 577 253 112 18 chr15 35615199 35615393 -65765128 + MIR SINE MIR 15 225 -37 2254 100 0 3 chr15 35615688 35616005 -65764516 + AluSq SINE Alu 1 316 0 22 0 0 0 chr15 35616655 35616677 -65763844 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 35616865 35616887 -65763634 + AT_rich Low_complexity Low_complexity 1 22 0 1640 186 75 3 chr15 35617451 35617769 -65762752 + MER58B DNA MER1_type 1 341 0 2202 136 0 0 chr15 35617835 35618136 -65762385 + AluSx SINE Alu 1 301 -11 193 269 66 86 chr15 35619996 35620193 -65760328 - L2 LINE L2 -349 2965 2773 757 252 60 28 chr15 35620485 35620703 -65759818 + MIR SINE MIR 5 229 -33 1242 90 0 0 chr15 35622151 35622363 -65758158 + (TCCA)n Simple_repeat Simple_repeat 1 212 0 1028 281 107 69 chr15 35622405 35623418 -65757103 - L2 LINE L2 -83 3230 2164 1812 162 0 3 chr15 35623443 35623727 -65756794 + AluJo SINE Alu 2 284 -28 2172 112 0 0 chr15 35623952 35624258 -65756263 - AluSq SINE Alu 0 306 1 236 250 42 28 chr15 35624680 35624824 -65755697 + T-rich Low_complexity Low_complexity 5 150 0 2822 150 16 6 chr15 35624824 35625323 -65755198 - L1MA9 LINE L1 0 6312 5809 2055 132 0 20 chr15 35625539 35625842 -65754679 + AluJb SINE Alu 1 297 -15 183 139 0 0 chr15 35627374 35627410 -65753111 + (T)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr15 35628432 35628454 -65752067 + AT_rich Low_complexity Low_complexity 1 22 0 1320 82 0 22 chr15 35630589 35630772 -65749749 + AluSg/x SINE Alu 126 304 -8 392 273 55 42 chr15 35630852 35631017 -65749504 + MER5B DNA MER1_type 2 168 -10 252 122 71 71 chr15 35631295 35631393 -65749128 + L1ME4a LINE L1 6023 6120 -1 672 285 85 41 chr15 35633060 35633544 -65746977 + L1MB7 LINE L1 5316 5820 -1988 1809 164 21 0 chr15 35633549 35633835 -65746686 + AluJo SINE Alu 1 292 -20 879 139 0 8 chr15 35633843 35633972 -65746549 - FLAM_C SINE Alu -15 128 1 1028 188 125 53 chr15 35634031 35634351 -65746170 - MER2 DNA MER2_type 0 344 2 912 106 0 28 chr15 35634505 35634647 -65745874 + AluSg/x SINE Alu 175 312 0 2388 86 0 0 chr15 35634683 35634987 -65745534 - AluY SINE Alu -7 304 1 314 187 53 53 chr15 35635021 35635096 -65745425 - MER2 DNA MER2_type -3 342 268 508 220 0 0 chr15 35635972 35636081 -65744440 + L1MB7 LINE L1 6069 6177 -7 199 308 0 19 chr15 35636928 35636980 -65743541 - MIR SINE MIR -112 96 46 188 309 98 32 chr15 35637922 35638045 -65742476 + L2 LINE L2 3173 3303 -10 1531 171 18 11 chr15 35638186 35638506 -65742015 - AluJb SINE Alu 0 322 1 192 178 22 44 chr15 35639230 35639275 -65741246 - L2 LINE L2 -16 3256 3213 479 339 0 16 chr15 35642041 35642168 -65738353 - MIR3 SINE MIR -48 160 36 24 32 0 0 chr15 35642228 35642259 -65738262 + AT_rich Low_complexity Low_complexity 1 31 0 833 156 0 0 chr15 35642283 35642411 -65738110 - FRAM SINE Alu -9 167 40 1894 105 37 125 chr15 35642493 35642902 -65737619 - THE1C LTR MaLR -2 373 1 10842 87 78 3 chr15 35642902 35644372 -65736149 - THE1B-int LTR MaLR 0 1580 1 2593 108 5 24 chr15 35644372 35644743 -65735778 - THE1B LTR MaLR 0 364 1 380 229 94 25 chr15 35646541 35646618 -65733903 - L1MD3 LINE L1 -21 7974 7904 492 18 0 0 chr15 35646618 35646675 -65733846 + (TA)n Simple_repeat Simple_repeat 1 57 0 1834 141 0 7 chr15 35646675 35646958 -65733563 - AluJb SINE Alu -26 286 6 380 229 94 25 chr15 35646958 35647107 -65733414 - L1MD3 LINE L1 -90 7905 6048 * 1083 156 46 25 chr15 35647094 35647332 -65733189 - L1MDa LINE L1 -4221 2319 2077 * 1177 181 55 38 chr15 35647327 35647620 -65732901 - L1MDa LINE L1 -4724 1816 1519 548 219 0 0 chr15 35647641 35647737 -65732784 - AluJ/FLAM SINE Alu -215 97 2 1301 150 73 13 chr15 35647738 35648024 -65732497 - MER33 DNA MER1_type -37 287 1 2124 141 6 35 chr15 35648535 35648882 -65731639 + MER1B DNA MER1_type 1 337 0 1800 142 9 28 chr15 35648994 35649312 -65731209 + AluJo SINE Alu 1 312 0 1644 141 6 48 chr15 35649478 35649625 -65730896 + AluSx SINE Alu 1 130 -182 264 30 0 0 chr15 35649625 35649658 -65730863 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1644 141 6 48 chr15 35649658 35649822 -65730699 + AluSx SINE Alu 130 299 -13 1740 180 39 25 chr15 35650262 35650695 -65729826 - MLT1D LTR MaLR 0 505 1 326 23 23 0 chr15 35651298 35651341 -65729180 + (TG)n Simple_repeat Simple_repeat 2 45 0 2164 62 28 0 chr15 35651854 35652143 -65728378 - AluY SINE Alu -14 297 1 510 217 17 0 chr15 35652451 35652571 -65727950 - L1M4 LINE L1 -2453 3693 3572 873 249 42 29 chr15 35652604 35652986 -65727535 - L1M4 LINE L1 -2685 3461 3056 669 250 90 5 chr15 35652987 35653175 -65727346 + MER58C DNA MER1_type 2 205 -10 352 218 75 41 chr15 35653175 35653333 -65727188 - L1M4 LINE L1 -3673 2473 2322 743 145 48 8 chr15 35653333 35653457 -65727064 - FLAM_A SINE Alu -4 129 1 352 218 75 41 chr15 35653457 35653514 -65727007 - L1M4 LINE L1 -3824 2322 2268 2053 113 30 0 chr15 35653514 35653814 -65726707 - AluSg SINE Alu -1 309 1 352 218 75 41 chr15 35653814 35653842 -65726679 - L1M4 LINE L1 -3878 2268 2186 1220 135 31 0 chr15 35653847 35654040 -65726481 - AluSg/x SINE Alu -10 300 102 199 327 87 67 chr15 35654200 35654604 -65725917 - L2 LINE L2 -340 2974 2563 1097 138 159 0 chr15 35654806 35654995 -65725526 - MER20 DNA MER1_type 0 219 1 1630 158 20 23 chr15 35655289 35655593 -65724928 + AluJo SINE Alu 1 303 -9 322 257 79 46 chr15 35655898 35656050 -65724471 + L1ME4a LINE L1 5536 5692 -429 2125 163 58 61 chr15 35656050 35656571 -65723950 - Charlie1b DNA MER1_type 0 523 5 279 273 110 43 chr15 35656579 35656725 -65723796 + L1ME4a LINE L1 5743 5878 -243 2307 71 3 3 chr15 35656725 35657035 -65723486 + AluY SINE Alu 1 310 -1 279 273 110 43 chr15 35657035 35657188 -65723333 + L1ME4a LINE L1 5878 6062 -59 1198 211 8 8 chr15 35657196 35657443 -65723078 - AluJo SINE Alu -17 295 49 1077 194 47 9 chr15 35657507 35657718 -65722803 + MER20 DNA MER1_type 1 219 0 196 389 44 9 chr15 35659917 35660030 -65720491 - L2 LINE L2 -6 3266 3150 2134 107 0 0 chr15 35660074 35660365 -65720156 + AluSx SINE Alu 1 291 -21 2071 121 0 0 chr15 35660845 35661142 -65719379 - AluSx SINE Alu -15 297 1 1050 185 78 45 chr15 35662168 35662411 -65718110 - MIR SINE MIR -11 251 1 24 0 0 0 chr15 35662499 35662523 -65717998 + AT_rich Low_complexity Low_complexity 1 24 0 2403 69 0 3 chr15 35662861 35663164 -65717357 + AluSq SINE Alu 1 302 -11 1870 146 13 7 chr15 35664304 35664606 -65715915 + AluJo SINE Alu 1 304 -8 507 118 0 0 chr15 35665455 35665540 -65714981 + (CTG)n Simple_repeat Simple_repeat 2 86 0 728 282 42 6 chr15 35668497 35668725 -65711796 + MIR SINE MIR 28 262 0 2538 45 0 3 chr15 35668811 35669119 -65711402 + AluY SINE Alu 1 307 -4 235 211 53 0 chr15 35669158 35669215 -65711306 + MIR SINE MIR 38 97 -111 767 308 78 34 chr15 35669243 35669894 -65710627 - L2 LINE L2 -11 3302 2622 302 325 8 32 chr15 35670087 35670213 -65710308 + LTR67 LTR ERVL 93 215 -342 1080 153 16 37 chr15 35670230 35670420 -65710101 - MER30B DNA MER1_type -4 186 1 637 289 102 9 chr15 35670529 35670754 -65709767 + L2 LINE L2 2226 2471 -843 861 198 0 0 chr15 35670754 35670926 -65709595 - AluJb SINE Alu -19 293 122 275 254 0 0 chr15 35671023 35671082 -65709439 + MLT1E2 LTR MaLR 2 60 -566 549 309 85 11 chr15 35671147 35671335 -65709186 + MIR SINE MIR 13 214 -48 664 165 127 7 chr15 35671352 35671493 -65709028 - MER3 DNA MER1_type -63 146 2 187 143 0 0 chr15 35671510 35671538 -65708983 + MIR SINE MIR 221 248 -14 789 175 126 10 chr15 35671580 35671786 -65708735 + MER113 DNA MER1_type? 15 244 -277 257 266 13 0 chr15 35672498 35672577 -65707944 + (TTAGGG)n Simple_repeat Simple_repeat 5 84 0 460 200 24 0 chr15 35672679 35672764 -65707757 + AluJb SINE Alu 203 289 -23 1167 211 89 28 chr15 35672770 35673097 -65707424 - LTR37A LTR ERV1 -72 354 8 204 177 16 16 chr15 35673099 35673161 -65707360 + T-rich Low_complexity Low_complexity 4 65 0 528 140 30 30 chr15 35673186 35673286 -65707235 + MIR SINE MIR 97 196 -66 254 233 194 49 chr15 35673925 35674128 -65706393 + MIR SINE MIR 8 251 -11 353 268 41 0 chr15 35674688 35674785 -65705736 - MIR SINE MIR -11 251 151 388 259 93 43 chr15 35675059 35675221 -65705300 + MIR SINE MIR 44 213 -49 560 228 28 90 chr15 35676189 35676400 -65704121 - MIR3 SINE MIR -8 200 3 225 0 0 0 chr15 35678034 35678059 -65702462 + (TTA)n Simple_repeat Simple_repeat 2 26 0 820 100 0 9 chr15 35678059 35678169 -65702352 - AluJb SINE Alu -191 121 13 634 251 53 6 chr15 35678314 35678485 -65702036 + MIR3 SINE MIR 9 187 -21 1644 141 6 48 chr15 35679595 35679742 -65700779 + AluSx SINE Alu 1 130 -182 264 30 0 0 chr15 35679742 35679775 -65700746 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1644 141 6 48 chr15 35679775 35679939 -65700582 + AluSx SINE Alu 130 299 -13 1740 180 39 25 chr15 35680379 35680812 -65699709 - MLT1D LTR MaLR 0 505 1 326 23 23 0 chr15 35681415 35681458 -65699063 + (TG)n Simple_repeat Simple_repeat 2 45 0 2032 95 39 0 chr15 35681971 35682256 -65698265 - AluSg SINE Alu -14 296 1 1220 135 31 0 chr15 35682289 35682482 -65698039 - AluSg/x SINE Alu -10 300 102 199 327 87 67 chr15 35682642 35683046 -65697475 - L2 LINE L2 -340 2974 2563 1097 138 159 0 chr15 35683248 35683437 -65697084 - MER20 DNA MER1_type 0 219 1 1472 155 24 28 chr15 35683744 35684035 -65696486 + AluJo SINE Alu 14 303 -9 322 257 79 46 chr15 35684340 35684492 -65696029 + L1ME LINE L1 5536 5692 -429 1301 148 80 82 chr15 35684492 35684869 -65695652 - Charlie1b DNA MER1_type 0 523 148 252 188 0 87 chr15 35685216 35685285 -65695236 - MER21B LTR ERV1 -124 739 677 3423 189 150 14 chr15 35685285 35686045 -65694476 + MER21B LTR ERV1 1 863 0 1163 249 61 93 chr15 35686045 35686622 -65693899 - MER21B LTR ERV1 -180 683 126 430 224 0 0 chr15 35686684 35686760 -65693761 - MER21B LTR ERV1 -767 96 21 246 213 0 0 chr15 35687107 35687154 -65693367 + L2 LINE L2 3016 3062 -210 214 259 0 19 chr15 35687435 35687489 -65693032 + L2 LINE L2 3139 3191 -81 435 277 45 0 chr15 35690309 35690421 -65690100 - L2 LINE L2 -5 3267 3151 29 0 0 0 chr15 35690555 35690584 -65689937 + AT_rich Low_complexity Low_complexity 1 29 0 352 259 215 19 chr15 35690713 35690918 -65689603 - L1MC4a LINE L1 -1845 5963 5719 450 203 39 52 chr15 35690971 35691086 -65689435 - L1MC4a LINE L1 -562 5592 5507 1503 144 4 38 chr15 35691093 35691394 -65689127 - AluJo SINE Alu 0 319 28 1808 152 55 52 chr15 35691696 35692058 -65688463 - MLT1A1 LTR MaLR -2 363 1 405 284 146 65 chr15 35692147 35692417 -65688104 - L2 LINE L2 -252 3061 2814 1721 142 3 48 chr15 35692417 35692728 -65687793 + L1MB8 LINE L1 5873 6169 -9 1749 139 0 63 chr15 35692729 35693059 -65687462 - AluJb SINE Alu 0 311 1 405 284 146 65 chr15 35693059 35693473 -65687048 - L2 LINE L2 -498 2815 2317 287 309 64 9 chr15 35693495 35693605 -65686916 - MIR SINE MIR -7 255 140 2170 90 28 0 chr15 35694045 35694334 -65686187 - AluSx SINE Alu -15 297 1 198 200 218 0 chr15 35694510 35694565 -65685956 - L2 LINE L2 -20 3252 3186 387 189 78 0 chr15 35694574 35694664 -65685857 + L1MB2 LINE L1 6068 6164 -7 266 325 26 34 chr15 35694736 35694853 -65685668 - L2 LINE L2 0 3313 3198 244 246 62 0 chr15 35694868 35694881 -65685640 + MER3 DNA MER1_type 33 49 -160 783 219 60 0 chr15 35694881 35695064 -65685457 - MER3 DNA MER1_type -1 208 15 259 362 57 0 chr15 35695109 35695214 -65685307 - MER91A DNA MER1_type -2 194 84 196 254 100 36 chr15 35695360 35695470 -65685051 + L2 LINE L2 2937 3053 -219 533 279 70 35 chr15 35696226 35696427 -65684094 + MIR SINE MIR 20 227 -35 324 314 39 0 chr15 35696411 35696513 -65684008 + MIR SINE MIR 50 155 -107 * 665 94 19 0 chr15 35696768 35696874 -65683647 + (TTCC)n Simple_repeat Simple_repeat 1 108 0 354 247 0 0 chr15 35696887 35696972 -65683549 - FRAM SINE Alu -15 151 67 1822 85 0 85 chr15 35697068 35697385 -65683136 - AluY SINE Alu -20 291 2 709 159 48 0 chr15 35697391 35697517 -65683004 - FLAM_C SINE Alu 0 143 12 333 265 139 42 chr15 35697535 35697701 -65682820 - L1MC/D LINE L1 -796 5446 5265 928 224 0 0 chr15 35697826 35697982 -65682539 + FAM SINE Alu 1 156 -19 28 0 0 0 chr15 35697986 35698014 -65682507 + AT_rich Low_complexity Low_complexity 1 28 0 3951 155 106 29 chr15 35698828 35700212 -65680309 + pTR5 LTR ERV1 745 2606 0 790 196 0 0 chr15 35700295 35700428 -65680093 + AluJ SINE Alu 1 133 -169 2372 54 7 0 chr15 35700535 35700831 -65679690 - AluY SINE Alu -13 298 1 358 189 54 0 chr15 35701980 35702054 -65678467 - MER45A DNA AcHobo -1 177 100 1874 160 3 3 chr15 35702054 35702354 -65678167 + AluJb SINE Alu 2 301 -11 915 145 0 7 chr15 35702359 35702511 -65678010 + AluJ SINE Alu 140 290 -22 367 192 0 55 chr15 35702523 35702596 -65677925 - MER45A DNA AcHobo -86 92 24 1848 140 0 28 chr15 35703045 35703366 -65677155 - AluJb SINE Alu 0 312 1 399 237 34 0 chr15 35705269 35705387 -65675134 - Charlie2 DNA MER1_type -31 2831 2710 777 177 32 57 chr15 35705443 35705659 -65674862 - Charlie2 DNA MER1_type -145 2717 2506 2008 157 0 0 chr15 35705659 35705971 -65674550 - AluJb SINE Alu 0 312 1 777 177 32 57 chr15 35705971 35706002 -65674519 - Charlie2 DNA MER1_type -356 2506 2476 1010 166 6 11 chr15 35706002 35706183 -65674338 + AluJb SINE Alu 133 312 0 1747 197 69 36 chr15 35706202 35706235 -65674286 - Charlie2 DNA MER1_type -424 2438 2408 2221 90 7 3 chr15 35706235 35706535 -65673986 + AluSc SINE Alu 1 301 -8 1747 197 69 36 chr15 35706535 35707049 -65673472 - Charlie2 DNA MER1_type -454 2408 1873 703 298 105 16 chr15 35707058 35707316 -65673205 - Charlie2 DNA MER1_type -2478 304 24 2258 133 37 50 chr15 35707593 35708051 -65672470 - Tigger2 DNA MER2_type 0 2718 2267 2008 122 3 22 chr15 35708053 35708365 -65672156 + AluJb SINE Alu 1 306 -6 362 188 12 30 chr15 35708824 35708847 -65671674 + L1MC4 LINE L1 1982 2004 -6318 2090 114 0 0 chr15 35708847 35709136 -65671385 + AluSx SINE Alu 1 289 -23 362 188 12 30 chr15 35709136 35709199 -65671322 + L1MC4 LINE L1 2004 6999 -1323 708 276 36 78 chr15 35709396 35709729 -65670792 - MLT1I LTR MaLR 0 409 91 394 246 120 28 chr15 35709904 35710046 -65670475 - MER117 DNA MER1_type -40 157 3 248 130 22 0 chr15 35710336 35710382 -65670139 + GA-rich Low_complexity Low_complexity 3 49 0 22 35 0 0 chr15 35710558 35710587 -65669934 + AT_rich Low_complexity Low_complexity 1 29 0 323 307 10 10 chr15 35711990 35712091 -65668430 - L2 LINE L2 -21 3251 3151 381 22 0 0 chr15 35712475 35712521 -65668000 + (TG)n Simple_repeat Simple_repeat 2 47 0 198 0 0 0 chr15 35713395 35713417 -65667104 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 2264 89 0 3 chr15 35713430 35713732 -65666789 + AluSx SINE Alu 1 301 -11 364 295 34 40 chr15 35713747 35713896 -65666625 - MIR3 SINE MIR -26 182 35 534 139 9 61 chr15 35714826 35714870 -65665651 + MLT1F LTR MaLR 434 479 -63 2335 77 0 10 chr15 35714870 35715182 -65665339 - AluSg SINE Alu -1 309 1 534 139 9 61 chr15 35715182 35715252 -65665269 + MLT1F LTR MaLR 479 542 0 198 385 108 0 chr15 35715373 35715521 -65665000 - L2 LINE L2 -655 2659 2496 1037 241 25 4 chr15 35715547 35715783 -65664738 - MIR SINE MIR -2 260 20 329 299 31 0 chr15 35716248 35716345 -65664176 + MIR3 SINE MIR 98 197 -11 327 333 0 10 chr15 35716732 35716831 -65663690 - MIR SINE MIR -66 142 45 840 190 62 22 chr15 35719189 35719368 -65661153 - MER91A DNA MER1_type 0 196 11 309 68 0 0 chr15 35721582 35721626 -65658895 + (CA)n Simple_repeat Simple_repeat 2 45 0 352 206 0 0 chr15 35722970 35723038 -65657483 + MER5A DNA MER1_type 4 71 -118 284 263 25 25 chr15 35723098 35723178 -65657343 - MIR SINE MIR -172 90 11 353 322 20 20 chr15 35723736 35723882 -65656639 + MER5B DNA MER1_type 1 146 -32 426 204 95 7 chr15 35723914 35724051 -65656470 - L1ME4a LINE L1 -6 6115 5967 216 0 0 0 chr15 35725303 35725327 -65655194 + (T)n Simple_repeat Simple_repeat 1 24 0 254 310 150 14 chr15 35725629 35725842 -65654679 - MIR SINE MIR -20 242 1 336 298 85 7 chr15 35726724 35726865 -65653656 + MIR SINE MIR 60 211 -51 2193 101 7 0 chr15 35728646 35728952 -65651569 + AluSp SINE Alu 1 308 -5 311 293 14 0 chr15 35728952 35729049 -65651472 - MIR SINE MIR -85 123 19 446 284 130 0 chr15 35730449 35730611 -65649910 - MIR SINE MIR -44 218 36 2212 76 41 0 chr15 35731299 35731589 -65648932 + AluSx SINE Alu 4 305 -7 546 16 0 0 chr15 35735667 35735730 -65644791 + (CA)n Simple_repeat Simple_repeat 2 64 0 384 22 0 0 chr15 35736707 35736752 -65643769 + (TG)n Simple_repeat Simple_repeat 1 45 0 288 0 0 0 chr15 35737393 35737425 -65643096 + (CA)n Simple_repeat Simple_repeat 2 33 0 23 33 0 0 chr15 35737912 35737942 -65642579 + GC_rich Low_complexity Low_complexity 1 30 0 229 188 29 29 chr15 35737947 35738016 -65642505 + G-rich Low_complexity Low_complexity 4 72 0 341 310 186 0 chr15 35738797 35738910 -65641611 - L2 LINE L2 -13 3259 3126 1908 104 11 0 chr15 35739060 35739362 -65641159 + AluSx SINE Alu 13 317 0 1816 157 0 20 chr15 35740440 35740745 -65639776 - AluJo SINE Alu -13 299 1 543 239 0 0 chr15 35742070 35742237 -65638284 + (TG)n Simple_repeat Simple_repeat 1 167 0 185 138 0 0 chr15 35742587 35742616 -65637905 + L2 LINE L2 3244 3272 0 746 149 0 101 chr15 35742755 35742903 -65637618 - FLAM_A SINE Alu 0 133 1 305 281 0 0 chr15 35743528 35743592 -65636929 - L2 LINE L2 -9 3263 3200 1457 199 33 19 chr15 35743871 35744178 -65636343 + AluJo SINE Alu 1 311 -1 287 242 0 16 chr15 35744184 35744246 -65636275 + MIR SINE MIR 16 76 -132 2237 90 3 7 chr15 35744351 35744661 -65635860 + AluSp SINE Alu 1 309 -4 319 300 100 15 chr15 35744720 35744850 -65635671 - MIR SINE MIR -3 259 119 1972 122 3 10 chr15 35745623 35745918 -65634603 - AluSx SINE Alu -19 293 1 28 0 0 0 chr15 35746719 35746747 -65633774 + AT_rich Low_complexity Low_complexity 1 28 0 2190 100 0 0 chr15 35746749 35747049 -65633472 + AluSx SINE Alu 1 300 -12 2125 131 0 0 chr15 35747939 35748245 -65632276 + AluSx SINE Alu 1 306 -6 440 282 73 28 chr15 35748247 35748495 -65632026 + MIR SINE MIR 2 260 -2 888 165 0 40 chr15 35748542 35748743 -65631778 + AluJb SINE Alu 136 312 0 2066 103 7 0 chr15 35748833 35749123 -65631398 + AluSg SINE Alu 1 292 -18 2102 168 12 0 chr15 35749152 35749491 -65631030 - MER2 DNA MER2_type 0 344 2 295 277 0 36 chr15 35749509 35749592 -65630929 + MIR SINE MIR 176 255 -7 1020 137 6 57 chr15 35749643 35749780 -65630741 + MER5A DNA MER1_type 2 144 -45 429 20 0 0 chr15 35749780 35749830 -65630691 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 1719 171 0 0 chr15 35749830 35750112 -65630409 - AluJb SINE Alu -30 282 1 1020 137 6 57 chr15 35750112 35750151 -65630370 + MER5A DNA MER1_type 142 165 -24 692 204 41 70 chr15 35750151 35750214 -65630307 + MER5B DNA MER1_type 1 64 -114 1971 155 0 0 chr15 35750214 35750518 -65630003 + AluSx SINE Alu 1 304 -8 692 204 41 70 chr15 35750518 35750626 -65629895 + MER5B DNA MER1_type 64 167 -11 207 268 297 22 chr15 35751438 35751576 -65628945 + MIR3 SINE MIR 81 256 -6 189 0 0 0 chr15 35752380 35752401 -65628120 + (CAGGG)n Simple_repeat Simple_repeat 1 21 0 1030 98 0 26 chr15 35752643 35752659 -65627862 - AluJb SINE Alu -163 149 134 2219 84 0 0 chr15 35752659 35752958 -65627563 - AluY SINE Alu -12 299 1 1030 98 0 26 chr15 35752958 35753094 -65627427 - AluJb SINE Alu -178 134 1 783 210 11 28 chr15 35753379 35753555 -65626966 - MER20 DNA MER1_type -1 218 46 475 259 170 0 chr15 35753610 35753757 -65626764 + MER5A DNA MER1_type 16 187 -2 258 244 89 0 chr15 35753833 35753923 -65626598 - MER20B DNA MER1_type -17 202 101 1694 141 99 46 chr15 35754474 35755038 -65625483 - SATR1 Satellite Satellite -138 594 1 299 212 5 58 chr15 35755140 35755329 -65625192 + (TTA)n Simple_repeat Simple_repeat 1 179 0 2407 174 106 2 chr15 35755340 35756318 -65624203 + SATR1 Satellite Satellite 1 1079 0 2436 183 102 7 chr15 35756346 35759520 -65621001 - SATR1 Satellite Satellite -1 3474 1 207 235 13 46 chr15 35759603 35759756 -65620765 + (TTA)n Simple_repeat Simple_repeat 1 148 0 319 222 0 72 chr15 35759773 35759967 -65620554 + (TTA)n Simple_repeat Simple_repeat 1 180 0 212 252 7 43 chr15 35760009 35760148 -65620373 + (TTA)n Simple_repeat Simple_repeat 3 136 0 2018 214 102 14 chr15 35760148 35761810 -65618711 + SATR1 Satellite Satellite 1 1808 0 2027 192 105 5 chr15 35761842 35762858 -65617663 + SATR1 Satellite Satellite 1 1118 -96 315 172 35 0 chr15 35762874 35762932 -65617589 - SATR1 Satellite Satellite -269 201 142 239 71 29 86 chr15 35765187 35765257 -65615264 + (CAGGG)n Simple_repeat Simple_repeat 1 66 0 442 145 21 118 chr15 35765333 35765519 -65615002 + (CAGGG)n Simple_repeat Simple_repeat 1 168 0 348 112 35 88 chr15 35765531 35765701 -65614820 + (CAGGG)n Simple_repeat Simple_repeat 1 161 0 813 151 0 43 chr15 35766739 35766878 -65613643 + FLAM_C SINE Alu 1 133 0 1199 165 15 0 chr15 35767138 35767338 -65613183 + MLT1B LTR MaLR 186 388 -2 397 270 17 9 chr15 35767357 35767472 -65613049 + MIR SINE MIR 145 260 -2 357 232 49 0 chr15 35767545 35767627 -65612894 + L2 LINE L2 2248 2333 -981 15188 19 1 0 chr15 35767627 35769377 -65611144 - L1PA4 LINE L1 -814 5332 3581 6735 40 0 1 chr15 35769377 35770195 -65610326 + L1PA4 LINE L1 5348 6175 0 198 0 0 0 chr15 35770208 35770230 -65610291 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 2489 47 0 0 chr15 35770244 35770543 -65609978 + AluY SINE Alu 1 299 -12 1037 213 92 25 chr15 35770565 35770902 -65609619 + MSTD LTR MaLR 1 396 0 1662 260 92 0 chr15 35770908 35771388 -65609133 + L2 LINE L2 2386 2909 -405 276 269 109 19 chr15 35771396 35771552 -65608969 + L1MCc LINE L1 17 186 -6237 1260 270 98 39 chr15 35772113 35772394 -65608127 + L1MCc LINE L1 1269 1532 -5590 566 39 0 13 chr15 35772394 35772472 -65608049 + (TA)n Simple_repeat Simple_repeat 2 78 0 1260 270 98 39 chr15 35772472 35772751 -65607770 + L1MCc LINE L1 1532 1793 -5329 2209 107 0 0 chr15 35772751 35773049 -65607472 - AluSx SINE Alu -13 299 2 1260 270 98 39 chr15 35773049 35773404 -65607117 + L1MCc LINE L1 1793 2444 -4678 600 182 0 0 chr15 35773416 35773692 -65606829 + FLAM_A SINE Alu 23 298 0 1096 233 66 68 chr15 35773695 35774082 -65606439 + L1MCc LINE L1 2438 2824 -4298 1623 175 0 11 chr15 35774082 35774367 -65606154 + AluJo SINE Alu 1 282 -30 282 56 0 0 chr15 35774372 35774408 -65606113 + (CA)n Simple_repeat Simple_repeat 1 36 0 1096 233 66 68 chr15 35774408 35774456 -65606065 + L1MCc LINE L1 2828 2878 -4244 1772 158 3 13 chr15 35774456 35774754 -65605767 + AluJb SINE Alu 1 295 -17 2842 88 21 75 chr15 35775609 35776077 -65604444 - MLT2A1 LTR ERVL 0 444 2 216 286 104 0 chr15 35776082 35776159 -65604362 - MIR3 SINE MIR 0 208 124 374 271 15 53 chr15 35776547 35776680 -65603841 - MER94 DNA DNA -6 128 1 1489 217 54 41 chr15 35777368 35777759 -65602762 + MSTD LTR MaLR 1 396 0 564 229 19 38 chr15 35778096 35778253 -65602268 + MLT1J LTR MaLR 356 509 -2 804 256 178 20 chr15 35778632 35779082 -65601439 + LTR33 LTR ERVL 1 521 0 638 258 108 31 chr15 35779087 35779471 -65601050 - MLT1L LTR MaLR 0 615 109 335 291 44 89 chr15 35779917 35780075 -65600446 + L2 LINE L2 3101 3251 -21 1535 194 0 7 chr15 35780076 35780386 -65600135 + AluJo SINE Alu 1 308 -4 549 248 102 0 chr15 35780441 35780598 -65599923 + MIR3 SINE MIR 36 208 0 25 31 0 0 chr15 35781547 35781579 -65598942 + AT_rich Low_complexity Low_complexity 1 32 0 1731 176 3 0 chr15 35781702 35782004 -65598517 - AluJb SINE Alu -9 303 1 1783 103 0 109 chr15 35782008 35782207 -65598314 - AluSx SINE Alu -10 302 83 2186 99 3 0 chr15 35782207 35782510 -65598011 - AluSp SINE Alu -9 304 1 2239 94 0 0 chr15 35782512 35782821 -65597700 - AluY SINE Alu -2 309 1 1783 103 0 109 chr15 35782821 35782957 -65597564 - AluSx SINE Alu -230 82 1 216 0 0 0 chr15 35783074 35783098 -65597423 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 797 162 78 0 chr15 35783365 35783507 -65597014 - MER20 DNA MER1_type -1 218 66 447 272 170 0 chr15 35783596 35783743 -65596778 + MER5A DNA MER1_type 16 187 -2 275 230 89 0 chr15 35783819 35783909 -65596612 - MER20B DNA MER1_type -17 202 101 355 326 99 73 chr15 35784738 35785082 -65595439 + L2 LINE L2 2917 3269 -3 192 315 231 0 chr15 35785152 35785260 -65595261 - L2 LINE L2 -2 3311 3179 2139 148 93 23 chr15 35785576 35785974 -65594547 - MSTB LTR MaLR 0 426 1 1916 109 43 0 chr15 35786232 35786508 -65594013 + AluSx SINE Alu 1 288 -24 1955 91 11 0 chr15 35787708 35787973 -65592548 - AluSx SINE Alu -11 301 34 423 225 185 45 chr15 35788791 35788969 -65591552 + MLT1K LTR MaLR 378 580 -8 689 155 6 88 chr15 35789160 35789341 -65591180 + FRAM SINE Alu 10 175 -1 367 255 63 47 chr15 35789524 35789635 -65590886 - MIR SINE MIR -64 144 37 269 289 258 21 chr15 35790497 35790691 -65589830 + MIR SINE MIR 22 261 -1 1779 262 125 31 chr15 35790906 35791782 -65588739 - L2 LINE L2 -37 3276 2329 2203 152 75 0 chr15 35791921 35792293 -65588228 + MER6 DNA MER2_type -7 401 -79 765 154 8 1 chr15 35792293 35792420 -65588101 + FLAM_C SINE Alu 2 126 -17 2649 152 9 13 chr15 35792431 35792879 -65587642 + MER6 DNA MER2_type 402 847 -18 1766 172 7 3 chr15 35793238 35793528 -65586993 - AluJo SINE Alu -20 292 2 869 116 7 43 chr15 35793666 35793804 -65586717 - FLAM_C SINE Alu 0 133 1 22 0 0 0 chr15 35793910 35793932 -65586589 + AT_rich Low_complexity Low_complexity 1 22 0 2028 146 0 10 chr15 35794854 35795155 -65585366 - AluSx SINE Alu -14 298 1 1755 200 123 25 chr15 35795175 35795342 -65585179 - L1ME2 LINE L1 -320 5844 5695 2431 63 0 3 chr15 35795342 35795641 -65584880 - AluY SINE Alu -12 299 2 1755 200 123 25 chr15 35795641 35796003 -65584518 - L1ME2 LINE L1 -469 5695 5263 233 180 40 0 chr15 35796042 35796092 -65584429 - LTR56 LTR ERV1 -59 386 335 1639 201 41 97 chr15 35796092 35796345 -65584176 - L1ME2 LINE L1 -871 5275 5009 2318 67 37 3 chr15 35796345 35796643 -65583878 - AluSq SINE Alu -5 308 1 1639 201 41 97 chr15 35796643 35797088 -65583433 - L1ME2 LINE L1 -1137 5009 4621 2391 100 3 0 chr15 35797088 35797399 -65583122 + AluSp SINE Alu 1 312 -1 1639 201 41 97 chr15 35797399 35797462 -65583059 - L1ME2 LINE L1 -1525 4621 4556 194 337 109 0 chr15 35797520 35797621 -65582900 + L2 LINE L2 2594 2705 -609 683 214 71 0 chr15 35798351 35798505 -65582016 - MIR SINE MIR -88 174 10 2083 147 3 0 chr15 35798609 35798915 -65581606 - AluSx SINE Alu -5 307 1 1880 161 0 3 chr15 35799941 35800239 -65580282 - AluJo SINE Alu -15 297 1 1672 188 10 7 chr15 35800270 35800573 -65579948 + AluJb SINE Alu 3 306 -6 266 108 0 0 chr15 35800790 35800827 -65579694 + Alu SINE Alu 2 38 -264 29 47 0 0 chr15 35800914 35800957 -65579564 + AT_rich Low_complexity Low_complexity 1 43 0 248 256 0 25 chr15 35801094 35801254 -65579267 + (TAAA)n Simple_repeat Simple_repeat 2 157 0 2313 142 50 10 chr15 35801298 35801715 -65578806 - Tigger2a DNA MER2_type 0 434 1 357 329 98 31 chr15 35801717 35801942 -65578579 + L3 LINE CR1 387 626 -951 2273 102 3 37 chr15 35801996 35802319 -65578202 + AluSx SINE Alu 1 312 0 265 227 0 45 chr15 35802319 35802377 -65578144 + L3 LINE CR1 1520 1576 -1 327 221 78 30 chr15 35802478 35802719 -65577802 + MER5C DNA MER1_type 12 322 -2 22 80 0 0 chr15 35803345 35803395 -65577126 + AT_rich Low_complexity Low_complexity 1 50 0 2334 84 0 3 chr15 35803686 35803984 -65576537 + AluSc SINE Alu 1 297 -12 334 301 38 11 chr15 35804135 35804318 -65576203 + L1ME LINE L1 5636 5823 -298 597 133 0 20 chr15 35804324 35804422 -65576099 + FRAM SINE Alu 72 167 -9 201 300 0 0 chr15 35804645 35804695 -65575826 + L2 LINE L2 2687 2736 -578 407 292 0 18 chr15 35804830 35804943 -65575578 + L2 LINE L2 2927 3037 -235 1866 146 0 32 chr15 35804951 35805259 -65575262 - AluJo SINE Alu -14 298 1 30 27 0 0 chr15 35805797 35805834 -65574687 + AT_rich Low_complexity Low_complexity 1 37 0 777 237 56 14 chr15 35805884 35806099 -65574422 - L1ME1 LINE L1 -89 6471 6248 * 2221 196 78 21 chr15 35806094 35806761 -65573760 - L1ME1 LINE L1 -855 5685 4981 3487 215 82 10 chr15 35806786 35807895 -65572626 - L1ME1 LINE L1 -2686 3854 2666 1252 148 13 13 chr15 35807926 35808156 -65572365 - L1MB8 LINE L1 -89 6089 5860 883 126 66 61 chr15 35808198 35808396 -65572125 - L1MB8 LINE L1 -305 5873 5675 369 132 0 15 chr15 35808419 35808487 -65572034 - HY4 scRNA scRNA 0 93 27 3098 214 84 75 chr15 35808490 35808970 -65571551 - L1ME1 LINE L1 -3870 2670 2196 198 0 0 0 chr15 35808970 35808992 -65571529 + (TA)n Simple_repeat Simple_repeat 2 23 0 3098 214 84 75 chr15 35808992 35809250 -65571271 - L1ME1 LINE L1 -4344 2196 1942 2208 116 0 38 chr15 35809250 35809568 -65570953 - AluSx SINE Alu -6 306 1 3098 214 84 75 chr15 35809568 35809639 -65570882 - L1ME1 LINE L1 -4598 1942 1873 2462 77 3 0 chr15 35809639 35809949 -65570572 - AluY SINE Alu 0 311 1 3098 214 84 75 chr15 35809949 35810095 -65570426 - L1ME1 LINE L1 -4667 1873 1730 2313 91 7 0 chr15 35810095 35810392 -65570129 - AluSp SINE Alu -14 299 1 3098 214 84 75 chr15 35810392 35810923 -65569598 - L1ME1 LINE L1 -4810 1730 1200 2181 131 0 0 chr15 35810923 35811221 -65569300 + AluSx SINE Alu 1 298 -14 3098 214 84 75 chr15 35811221 35811583 -65568938 - L1ME1 LINE L1 -5340 1200 843 642 296 50 50 chr15 35811565 35812039 -65568482 - L1ME1 LINE L1 -5573 957 34 * 861 219 32 0 chr15 35813314 35813469 -65567052 - FRAM SINE Alu -15 161 2 420 56 0 0 chr15 35813480 35813534 -65566987 - L1MC1 LINE L1 -15 6318 6265 35 54 0 0 chr15 35813998 35814054 -65566467 + AT_rich Low_complexity Low_complexity 1 56 0 769 109 47 47 chr15 35814752 35814880 -65565641 + AluJo SINE Alu 1 128 -174 2354 79 0 25 chr15 35815429 35815746 -65564775 - AluY SINE Alu -2 309 1 1033 170 6 0 chr15 35815762 35815921 -65564600 + AluJo SINE Alu 134 293 -19 1903 161 26 0 chr15 35815946 35816250 -65564271 + AluJo SINE Alu 1 312 0 2277 85 11 0 chr15 35816380 35816662 -65563859 - AluSg SINE Alu -25 285 1 2075 148 0 0 chr15 35816897 35817200 -65563321 - AluSx SINE Alu -7 305 3 2845 180 24 12 chr15 35817201 35817796 -65562725 - L1MB8 LINE L1 -269 5909 5308 646 131 28 0 chr15 35817797 35817904 -65562617 - Tigger7 DNA MER2_type 0 2487 2378 * 2425 164 95 44 chr15 35817892 35818066 -65562455 - Tigger7 DNA MER2_type -1910 577 413 1636 194 3 28 chr15 35818066 35818385 -65562136 + AluJo SINE Alu 1 311 -1 2425 164 95 44 chr15 35818385 35818631 -65561890 - Tigger7 DNA MER2_type -2074 413 120 2086 137 0 0 chr15 35818631 35818930 -65561591 - AluSx SINE Alu -13 299 1 2425 164 95 44 chr15 35818930 35819056 -65561465 - Tigger7 DNA MER2_type -2367 120 2 3567 182 20 36 chr15 35819057 35819949 -65560572 - L1MB8 LINE L1 -838 5308 4431 4586 182 45 14 chr15 35819954 35820603 -65559918 - L1MC2 LINE L1 -9 6335 5647 1594 197 14 0 chr15 35820603 35820892 -65559629 - AluJo SINE Alu -19 293 1 4586 182 45 14 chr15 35820892 35821183 -65559338 - L1MC2 LINE L1 -697 5647 5366 1187 123 215 58 chr15 35821215 35821369 -65559152 - AluJb SINE Alu 0 302 174 2062 106 53 0 chr15 35821369 35821653 -65558868 + AluSq SINE Alu 1 299 -14 1187 123 215 58 chr15 35821653 35821758 -65558763 - AluJb SINE Alu -128 174 2 1238 229 26 42 chr15 35821791 35822246 -65558275 - L1MB8 LINE L1 -1717 4429 3982 234 351 14 14 chr15 35822247 35822321 -65558200 - MER5A DNA MER1_type -38 151 78 6226 130 7 4 chr15 35822730 35824177 -65556344 - L1PB1 LINE L1 0 6151 4704 256 100 0 4 chr15 35825767 35825852 -65554669 + AluJb SINE Alu 1 117 -185 835 108 0 54 chr15 35825985 35826114 -65554407 - FLAM_C SINE Alu -15 128 7 264 337 27 48 chr15 35826331 35826518 -65554003 + L2 LINE L2 465 647 -2667 729 343 73 25 chr15 35826524 35826554 -65553967 + L2 LINE L2 2782 2809 -504 748 175 32 0 chr15 35826554 35826680 -65553841 + FLAM_A SINE Alu 1 130 -3 729 343 73 25 chr15 35826680 35827131 -65553390 + L2 LINE L2 2809 3290 -23 758 212 121 57 chr15 35829143 35829400 -65551121 + L1MC5 LINE L1 7300 7539 -422 2424 64 0 22 chr15 35829400 35829711 -65550810 - AluY SINE Alu -7 304 1 758 212 121 57 chr15 35829711 35829906 -65550615 + L1MC5 LINE L1 7539 7781 -180 4203 143 42 4 chr15 35830536 35831297 -65549224 + L1MB7 LINE L1 5376 6165 -19 421 188 161 0 chr15 35831763 35831875 -65548646 - L1ME3 LINE L1 -8 6154 6025 213 94 0 0 chr15 35832347 35832379 -65548142 + (TA)n Simple_repeat Simple_repeat 2 33 0 1968 145 3 13 chr15 35832379 35832682 -65547839 - AluJb SINE Alu -12 300 1 2401 80 3 0 chr15 35832687 35832989 -65547532 - AluSq SINE Alu -10 303 1 458 311 70 11 chr15 35833074 35833347 -65547174 + L1ME LINE L1 5460 5748 -373 288 192 0 0 chr15 35834278 35834330 -65546191 - MIR SINE MIR -12 250 199 2317 98 0 0 chr15 35834556 35834852 -65545669 - AluSx SINE Alu -16 296 1 541 194 0 10 chr15 35835064 35835167 -65545354 + AluS SINE Alu 1 102 -211 871 168 0 0 chr15 35835499 35835636 -65544885 + FLAM_C SINE Alu 2 138 -5 312 49 0 0 chr15 35835672 35835713 -65544808 - FRAM/FAM SINE Alu -101 74 34 996 137 0 0 chr15 35835747 35835893 -65544628 + FRAM SINE Alu 1 40 0 29 94 0 0 chr15 35835903 35835988 -65544533 + AT_rich Low_complexity Low_complexity 1 85 0 2263 125 0 0 chr15 35835999 35836296 -65544225 + AluSq SINE Alu 1 297 -16 1650 134 97 0 chr15 35836583 35836852 -65543669 - AluJo SINE Alu -17 295 1 2321 45 0 17 chr15 35836882 35837174 -65543347 + AluY SINE Alu 1 287 -24 574 261 30 49 chr15 35838046 35838249 -65542272 - HAL1 LINE L1 -542 1965 1767 1562 162 40 11 chr15 35838252 35838530 -65541991 - AluJo SINE Alu -8 304 19 908 237 101 58 chr15 35838553 35839561 -65540960 - HAL1 LINE L1 -1009 1498 329 2053 119 0 38 chr15 35839561 35839879 -65540642 - AluSq SINE Alu -7 306 1 908 237 101 58 chr15 35839879 35840148 -65540373 - HAL1 LINE L1 -2178 329 73 300 250 29 29 chr15 35840824 35840928 -65539593 - MIR SINE MIR -12 250 147 2076 133 0 10 chr15 35841280 35841582 -65538939 - AluJb SINE Alu -13 299 1 416 236 39 60 chr15 35842482 35842673 -65537848 - MER20B DNA MER1_type 0 219 33 2191 109 7 14 chr15 35842932 35843226 -65537295 + AluSp SINE Alu 1 292 -21 2450 80 0 0 chr15 35843232 35843533 -65536988 + AluY SINE Alu 1 301 -10 908 143 0 0 chr15 35843542 35843675 -65536846 + FLAM_C SINE Alu 1 133 0 257 299 21 111 chr15 35843675 35843819 -65536702 - MIR3 SINE MIR -25 183 53 201 238 48 12 chr15 35843880 35843903 -65536618 + (CATATA)n Simple_repeat Simple_repeat 3 24 -65 1828 172 3 7 chr15 35843903 35844199 -65536322 + AluJb SINE Alu 3 297 -15 201 238 48 12 chr15 35844199 35844259 -65536262 + (CATATA)n Simple_repeat Simple_repeat 24 89 0 275 0 0 28 chr15 35844281 35844317 -65536204 + (TA)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr15 35844317 35844338 -65536183 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr15 35844630 35844680 -65535841 + AT_rich Low_complexity Low_complexity 1 50 0 379 239 190 43 chr15 35845613 35845797 -65534724 + MIR SINE MIR 26 236 -26 2460 89 0 0 chr15 35846650 35846954 -65533567 - AluSg SINE Alu -6 304 1 670 107 48 0 chr15 35847184 35847287 -65533234 + AluSq/x SINE Alu 1 108 -205 962 216 50 53 chr15 35848042 35848343 -65532178 - AluSq SINE Alu -1 302 3 600 148 123 33 chr15 35848372 35848494 -65532027 + FLAM_A SINE Alu 1 133 0 4706 184 44 14 chr15 35848518 35848821 -65531700 + L1MC2 LINE L1 5354 5646 -698 1611 197 14 0 chr15 35848821 35849110 -65531411 + AluJo SINE Alu 1 293 -19 4706 184 44 14 chr15 35849110 35849759 -65530762 + L1MC2 LINE L1 5646 6335 -9 3628 187 26 36 chr15 35849738 35850656 -65529865 + L1MB8 LINE L1 4400 5308 -838 * 2418 164 95 44 chr15 35850657 35850783 -65529738 + Tigger7 DNA MER2_type 2 120 -2367 2112 137 0 0 chr15 35850783 35851082 -65529439 + AluSx SINE Alu 1 299 -13 2418 164 95 44 chr15 35851082 35851328 -65529193 + Tigger7 DNA MER2_type 120 413 -2074 1667 194 3 28 chr15 35851328 35851647 -65528874 - AluJo SINE Alu -1 311 1 2418 164 95 44 chr15 35851647 35851821 -65528700 + Tigger7 DNA MER2_type 413 577 -1910 651 131 28 0 chr15 35851809 35851916 -65528605 + Tigger7 DNA MER2_type 2382 2491 0 * 3582 177 29 41 chr15 35851917 35852513 -65528008 + L1MB8 LINE L1 5308 5893 -285 2058 148 0 3 chr15 35852513 35852824 -65527697 + AluSx SINE Alu 3 312 0 3582 177 29 41 chr15 35852824 35853048 -65527473 + L1MB8 LINE L1 5893 6118 -60 1071 138 0 25 chr15 35853091 35853251 -65527270 + AluSg SINE Alu 1 156 -154 306 50 0 0 chr15 35853262 35853302 -65527219 - FRAM/FAM SINE Alu -100 75 36 1020 137 0 0 chr15 35853338 35853484 -65527037 + FRAM SINE Alu 1 40 0 29 94 0 0 chr15 35853494 35853579 -65526942 + AT_rich Low_complexity Low_complexity 1 85 0 2294 125 0 0 chr15 35853590 35853887 -65526634 + AluSq SINE Alu 1 297 -16 1921 134 14 20 chr15 35854449 35854741 -65525780 + AluSx SINE Alu 1 290 -22 1521 154 117 4 chr15 35856414 35856680 -65523841 - AluJb SINE Alu -16 296 1 1641 177 10 32 chr15 35857084 35857394 -65523127 + AluJo SINE Alu 1 303 -9 2368 107 7 0 chr15 35858845 35859153 -65521368 + AluSq SINE Alu 1 310 -3 509 256 146 7 chr15 35859191 35859328 -65521193 - MER91A DNA MER1_type -6 190 35 703 201 184 11 chr15 35859605 35859784 -65520737 - AluJo SINE Alu -16 296 87 642 264 50 104 chr15 35859795 35860380 -65520141 + L2 LINE L2 2726 3270 -43 313 337 131 6 chr15 35860533 35860708 -65519813 + L1MC/D LINE L1 5458 5654 -2154 854 137 0 0 chr15 35862290 35862407 -65518114 - AluJb SINE Alu -195 117 1 2321 106 7 0 chr15 35862904 35863205 -65517316 - AluSp SINE Alu -10 303 1 466 257 197 0 chr15 35863345 35863497 -65517024 + MIR SINE MIR 7 188 -74 1784 133 21 53 chr15 35864105 35864208 -65516313 + MER7A DNA MER2_type 10 115 -2923 1719 174 17 13 chr15 35864208 35864507 -65516014 - AluJb SINE Alu -4 308 9 1784 133 21 53 chr15 35864507 35864741 -65515780 + MER7A DNA MER2_type 115 334 -12 196 284 75 0 chr15 35864933 35865000 -65515521 + MIR SINE MIR 116 187 -75 2883 10 0 0 chr15 35865410 35865718 -65514803 - AluYa5 SINE Alu -3 308 1 658 250 30 29 chr15 35865884 35866289 -65514232 - MLT1L LTR MaLR -8 607 111 868 200 0 0 chr15 35866384 35866529 -65513992 + FRAM SINE Alu 1 145 -31 440 260 89 0 chr15 35866629 35866752 -65513769 + MIR SINE MIR 30 163 -99 * 464 298 46 0 chr15 35866738 35866869 -65513652 + L2 LINE L2 3177 3313 0 294 289 0 0 chr15 35866871 35866947 -65513574 + MIR SINE MIR 173 248 -14 1688 147 157 10 chr15 35866994 35867287 -65513234 - MER1B DNA MER1_type -1 336 1 414 290 85 28 chr15 35868008 35868184 -65512337 + MIR SINE MIR 63 248 -14 557 208 246 0 chr15 35868291 35868421 -65512100 - AluJo/FRAM SINE Alu -4 298 137 1446 132 180 0 chr15 35868424 35868674 -65511847 - AluJo SINE Alu -7 295 1 432 283 67 28 chr15 35869970 35870150 -65510371 + MIR3 SINE MIR 16 202 -6 292 120 20 20 chr15 35870188 35870238 -65510283 - L2 LINE L2 0 3272 3223 239 213 0 0 chr15 35870559 35870606 -65509915 + MLT1K LTR MaLR 27 73 -515 2164 96 11 0 chr15 35871309 35871617 -65508904 - AluSx SINE Alu 0 311 1 212 185 19 37 chr15 35871907 35871961 -65508560 + (CATA)n Simple_repeat Simple_repeat 1 53 0 740 262 20 51 chr15 35871981 35872275 -65508246 - L1ME LINE L1 -303 5818 5534 2371 92 3 0 chr15 35872500 35872793 -65507728 - AluSg SINE Alu -16 294 1 575 293 122 9 chr15 35872939 35873161 -65507360 - MIR SINE MIR -1 261 15 234 128 0 0 chr15 35875567 35875606 -65504915 + (T)n Simple_repeat Simple_repeat 1 39 0 216 186 23 0 chr15 35876028 35876071 -65504450 - L2 LINE L2 -4 3268 3225 187 315 87 11 chr15 35877896 35877988 -65502533 - L2 LINE L2 -32 3240 3142 751 271 45 14 chr15 35878331 35878552 -65501969 + MIR SINE MIR 34 261 -1 226 287 87 53 chr15 35878559 35878709 -65501812 - L2 LINE L2 -150 3122 2968 1020 195 5 10 chr15 35879064 35879269 -65501252 + AluSc SINE Alu 1 204 -105 1381 167 0 0 chr15 35880203 35880425 -65500096 - AluSq SINE Alu -91 222 1 391 285 36 36 chr15 35881380 35881545 -65498976 - MIR3 SINE MIR -31 177 13 180 267 13 53 chr15 35882149 35882224 -65498297 - L2 LINE L2 -3011 303 232 189 172 141 62 chr15 35883776 35883840 -65496681 - MIR SINE MIR -99 163 95 180 351 13 13 chr15 35884599 35884676 -65495845 + MIR3 SINE MIR 8 84 -124 1968 163 33 87 chr15 35884681 35885073 -65495448 - MLT1A1 LTR MaLR -3 362 1 626 275 5 26 chr15 35885074 35885263 -65495258 + MIR SINE MIR 78 262 0 341 287 175 28 chr15 35886081 35886224 -65494297 - L3 LINE CR1 -2 1575 1412 26 0 0 0 chr15 35888589 35888615 -65491906 + GC_rich Low_complexity Low_complexity 1 26 0 431 247 93 71 chr15 35889795 35889977 -65490544 + MIR SINE MIR 5 190 -72 308 243 14 14 chr15 35890321 35890395 -65490126 + MIR SINE MIR 46 119 -89 521 240 186 15 chr15 35890400 35890604 -65489917 + MIR SINE MIR 9 247 -15 914 196 0 23 chr15 35891790 35891963 -65488558 + AluJo SINE Alu 124 292 -20 372 269 120 69 chr15 35892339 35892555 -65487966 + MIR SINE MIR 3 229 -33 523 301 95 21 chr15 35893056 35893392 -65487129 - MARNA DNA Mariner -167 419 59 788 246 139 0 chr15 35894062 35894277 -65486244 + MIR SINE MIR 8 252 -10 185 250 0 0 chr15 35894245 35894281 -65486240 + L2 LINE L2 3225 3260 -12 * 556 84 0 0 chr15 35895234 35895305 -65485216 + Alu SINE Alu 3 73 -245 2363 94 0 3 chr15 35896269 35896576 -65483945 + AluSx SINE Alu 1 306 -6 249 312 80 0 chr15 35896576 35896714 -65483807 - L1ME4a LINE L1 0 6121 5973 1343 231 65 97 chr15 35896984 35897656 -65482865 - L1M4 LINE L1 -1110 5036 4343 2422 64 0 0 chr15 35897656 35897953 -65482568 - AluY SINE Alu -14 297 1 1343 231 65 97 chr15 35897953 35898024 -65482497 - L1M4 LINE L1 -1803 4343 4322 2206 88 0 3 chr15 35898024 35898308 -65482213 + AluSc SINE Alu 3 285 -24 1343 231 65 97 chr15 35898308 35898415 -65482106 - L1M4 LINE L1 -1824 4322 4213 1925 109 0 11 chr15 35899009 35899309 -65481212 + AluSx SINE Alu 23 312 0 2058 129 0 7 chr15 35900380 35900682 -65479839 - AluSx SINE Alu -12 300 1 339 301 34 23 chr15 35901017 35901193 -65479328 - L1M4 LINE L1 -2369 3777 3600 331 175 48 97 chr15 35901965 35902068 -65478453 - MER53 DNA DNA 0 189 92 190 227 107 13 chr15 35903726 35903801 -65476720 - MIR SINE MIR -116 146 65 2285 66 0 20 chr15 35904141 35904444 -65476077 + AluY SINE Alu 1 297 -14 644 239 165 0 chr15 35905025 35905213 -65475308 - MER20 DNA MER1_type 0 219 1 242 221 163 23 chr15 35905710 35905796 -65474725 + MIR SINE MIR 163 260 -2 2055 115 0 7 chr15 35905799 35906086 -65474435 - AluSx SINE Alu -27 285 1 23 0 0 0 chr15 35906089 35906112 -65474409 + AT_rich Low_complexity Low_complexity 1 23 0 253 280 174 0 chr15 35907093 35907225 -65473296 + MER5A DNA MER1_type 1 155 -34 276 167 175 63 chr15 35907237 35907363 -65473158 - MIR3 SINE MIR -60 148 9 2308 92 0 3 chr15 35912046 35912349 -65468172 - AluSg SINE Alu -7 303 2 328 157 86 70 chr15 35912364 35912489 -65468032 - MIR SINE MIR -63 145 62 360 0 0 0 chr15 35913515 35913555 -65466966 + (TG)n Simple_repeat Simple_repeat 2 41 0 24 32 0 0 chr15 35918806 35918837 -65461684 + GC_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr15 35919358 35919381 -65461140 + GC_rich Low_complexity Low_complexity 1 23 0 2504 52 7 0 chr15 35921332 35921637 -65458884 + AluSc SINE Alu 1 307 -2 200 111 28 0 chr15 35922241 35922277 -65458244 + T-rich Low_complexity Low_complexity 2 38 0 236 253 116 20 chr15 35923314 35923424 -65457097 - MIR SINE MIR -59 149 42 241 254 262 0 chr15 35925092 35925214 -65455307 - MIR3 SINE MIR -40 168 15 493 284 68 35 chr15 35926139 35926382 -65454139 + MIR SINE MIR 7 258 -4 378 0 0 0 chr15 35926700 35926742 -65453779 + (GA)n Simple_repeat Simple_repeat 2 43 0 270 0 0 0 chr15 35926741 35926771 -65453750 + (TG)n Simple_repeat Simple_repeat 2 31 0 * 207 259 9 43 chr15 35928103 35928219 -65452302 + (CCGCG)n Simple_repeat Simple_repeat 1 112 0 508 265 139 5 chr15 35929276 35929477 -65451044 + MIR SINE MIR 27 259 -3 258 81 0 0 chr15 35933342 35933379 -65447142 + (TCC)n Simple_repeat Simple_repeat 1 37 0 593 275 100 15 chr15 35933958 35934158 -65446363 + L2 LINE L2 3027 3243 -29 183 394 24 16 chr15 35936146 35936273 -65444248 + L3 LINE CR1 649 776 -801 389 203 41 16 chr15 35936342 35936465 -65444056 + L1MB7 LINE L1 2424 2549 -3597 * 660 157 48 0 chr15 35936457 35936604 -65443917 + L1MB7 LINE L1 5100 5253 -893 2604 188 74 11 chr15 35936610 35936836 -65443685 + L1MB7 LINE L1 5297 5507 -677 2088 90 0 0 chr15 35936836 35937104 -65443417 + AluSx SINE Alu 32 299 -13 2604 188 74 11 chr15 35937104 35937527 -65442994 + L1MB7 LINE L1 5507 5987 -197 386 288 150 0 chr15 35938038 35938191 -65442330 + MER91A DNA MER1_type 21 196 0 22 0 0 0 chr15 35938202 35938224 -65442297 + AT_rich Low_complexity Low_complexity 1 22 0 211 337 41 10 chr15 35938239 35938337 -65442184 - L3 LINE CR1 -195 1382 1282 261 83 0 0 chr15 35941547 35941583 -65438938 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1524 62 5 0 chr15 35941951 35942146 -65438375 - L1PA8 LINE L1 0 6172 5977 189 74 0 0 chr15 35944761 35944788 -65435733 + (CCCCCA)n Simple_repeat Simple_repeat 4 30 0 2318 52 7 0 chr15 35945207 35945493 -65435028 + AluY SINE Alu 1 288 -23 26 30 0 0 chr15 35945636 35945669 -65434852 + AT_rich Low_complexity Low_complexity 1 33 0 347 358 20 10 chr15 35945909 35946110 -65434411 - L1ME LINE L1 -462 5659 5457 2266 92 3 0 chr15 35946192 35946496 -65434025 + AluSq SINE Alu 1 305 -8 630 219 118 6 chr15 35947397 35947575 -65432946 + MIR SINE MIR 65 262 0 1424 163 47 47 chr15 35948156 35948456 -65432065 + AluSq SINE Alu 3 302 -1 288 197 0 0 chr15 35949084 35949145 -65431376 + Alu SINE Alu 240 300 0 364 378 70 9 chr15 35949150 35949380 -65431141 + L1M4 LINE L1 5136 5379 -767 2115 89 10 10 chr15 35949384 35949675 -65430846 + AluSg SINE Alu 1 291 -19 1850 151 27 0 chr15 35949799 35950091 -65430430 - AluJo SINE Alu 0 312 13 1009 178 0 22 chr15 35950105 35950290 -65430231 - FRAM SINE Alu 0 176 1 1599 68 0 10 chr15 35950304 35950510 -65430011 + AluY SINE Alu 1 204 -107 217 315 213 0 chr15 35950629 35950756 -65429765 + MIR3 SINE MIR 40 193 -15 736 183 0 29 chr15 35952160 35952297 -65428224 - FLAM_A SINE Alu 0 133 1 980 340 31 3 chr15 35952299 35952658 -65427863 + L3 LINE CR1 636 1004 -573 241 313 45 18 chr15 35952673 35952785 -65427736 - MER5A DNA MER1_type -2 187 73 868 159 8 0 chr15 35952812 35952944 -65427577 - AluJo SINE Alu -169 133 1 207 383 16 55 chr15 35953002 35953185 -65427336 + L3 LINE CR1 1015 1190 -387 2107 121 0 0 chr15 35953248 35953538 -65426983 + AluSx SINE Alu 1 290 -22 803 333 55 19 chr15 35953578 35953998 -65426523 - LTR16A LTR ERVL 0 450 16 1354 314 58 36 chr15 35954320 35955397 -65425124 - HERV16 LTR ERVL -611 5153 4007 1229 133 36 0 chr15 35955397 35955593 -65424928 + AluJb SINE Alu 99 301 -11 1151 332 101 26 chr15 35955763 35956079 -65424442 - HERV16 LTR ERVL -2998 1998 1707 6238 183 44 52 chr15 35956079 35957196 -65423325 + Charlie1a DNA MER1_type 1 1126 -1635 1853 150 7 10 chr15 35957196 35957503 -65423018 + AluJb SINE Alu 2 307 -5 6238 183 44 52 chr15 35957503 35957607 -65422914 + Charlie1a DNA MER1_type 1126 1229 -1532 2280 76 0 0 chr15 35957607 35957884 -65422637 + AluSg SINE Alu 3 279 -31 243 0 0 0 chr15 35957888 35957915 -65422606 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6238 183 44 52 chr15 35957915 35958092 -65422429 + Charlie1a DNA MER1_type 1232 1394 -1367 1607 197 0 14 chr15 35958092 35958382 -65422139 - AluJo SINE Alu -26 286 1 6238 183 44 52 chr15 35958382 35958444 -65422077 + Charlie1a DNA MER1_type 1394 1455 0 1151 332 101 26 chr15 35958444 35959069 -65421452 - HERV16 LTR ERVL -3289 1707 872 564 293 44 36 chr15 35959350 35959599 -65420922 + MIR SINE MIR 1 251 -11 343 378 5 47 chr15 35959608 35959801 -65420720 + L3 LINE CR1 1390 1574 -3 475 305 50 5 chr15 35960000 35960200 -65420321 + L3b LINE CR1 1166 1374 -209 2310 41 6 54 chr15 35960358 35960673 -65419848 - AluY SINE Alu -10 301 2 378 0 0 0 chr15 35961019 35961061 -65419460 + (TG)n Simple_repeat Simple_repeat 2 43 0 189 158 32 32 chr15 35962513 35962608 -65417913 + (CGG)n Simple_repeat Simple_repeat 2 96 0 24 53 0 0 chr15 35962763 35962801 -65417720 + GC_rich Low_complexity Low_complexity 1 38 0 31 58 0 0 chr15 35962989 35963041 -65417480 + GC_rich Low_complexity Low_complexity 1 52 0 185 280 252 9 chr15 35967519 35967626 -65412895 + L2 LINE L2 3171 3303 -10 773 193 42 18 chr15 35969020 35969186 -65411335 + MER5A DNA MER1_type 20 189 0 296 132 0 19 chr15 35970530 35970583 -65409938 - L2 LINE L2 -1 3271 3220 512 65 130 0 chr15 35970633 35970710 -65409811 - 5S rRNA rRNA -34 87 1 565 339 39 0 chr15 35970729 35970909 -65409612 - MIR SINE MIR -74 188 2 213 225 36 108 chr15 35972282 35972347 -65408174 + MER5A DNA MER1_type 9 64 -125 1972 144 7 7 chr15 35972347 35972652 -65407869 + AluJb SINE Alu 1 305 -7 213 225 36 108 chr15 35972652 35972697 -65407824 + MER5A DNA MER1_type 64 111 -78 332 282 109 0 chr15 35976012 35976122 -65404399 + MIR3 SINE MIR 33 154 -54 217 264 14 28 chr15 35976285 35976357 -65404164 + MIR3 SINE MIR 117 187 -21 448 212 44 26 chr15 35977109 35977222 -65403299 + MIR SINE MIR 70 184 -78 7837 115 21 24 chr15 35980489 35981267 -65399254 + Tigger3b DNA MER2_type 1 776 -2252 1820 173 7 0 chr15 35981267 35981568 -65398953 - AluJo SINE Alu -9 303 1 7837 115 21 24 chr15 35981568 35982022 -65398499 + Tigger3b DNA MER2_type 776 1230 -1 284 341 73 17 chr15 35983375 35983554 -65396967 + L2 LINE L2 3079 3267 -5 355 308 24 53 chr15 35983911 35984080 -65396441 - MIR3 SINE MIR -35 173 10 246 287 233 33 chr15 35984570 35984720 -65395801 + MIR SINE MIR 65 244 -18 550 202 28 0 chr15 35986849 35986958 -65393563 - MER81 DNA DNA -1 113 2 324 333 54 30 chr15 35988582 35988750 -65391771 + MIR SINE MIR 20 191 -71 2158 135 0 0 chr15 35988910 35989222 -65391299 + AluSx SINE Alu 1 312 0 192 77 0 0 chr15 35989236 35989262 -65391259 + (GGAA)n Simple_repeat Simple_repeat 4 29 0 251 350 83 17 chr15 35989675 35989795 -65390726 + MIR SINE MIR 125 252 -10 360 0 0 0 chr15 35989909 35989949 -65390572 + (CA)n Simple_repeat Simple_repeat 1 40 0 1494 144 79 40 chr15 35990704 35990810 -65389711 + AluJb SINE Alu 1 101 -211 2221 106 0 0 chr15 35990810 35991103 -65389418 - AluSx SINE Alu -19 293 1 1494 144 79 40 chr15 35991103 35991274 -65389247 + AluJb SINE Alu 101 289 -23 333 0 0 0 chr15 35992177 35992214 -65388307 + (TG)n Simple_repeat Simple_repeat 1 37 0 184 222 0 0 chr15 35993112 35993148 -65387373 - MIR SINE MIR -135 73 38 231 346 15 31 chr15 35995893 35996023 -65384498 + L2 LINE L2 2956 3083 -189 321 105 18 0 chr15 35996621 35996678 -65383843 + L1PA16 LINE L1 6092 6149 -17 244 133 0 0 chr15 35996678 35996728 -65383793 - Tigger3(Golem) DNA MER2_type -487 2542 2493 372 43 0 0 chr15 35997300 35997346 -65383175 + (CCG)n Simple_repeat Simple_repeat 3 48 0 183 80 0 0 chr15 35997399 35997424 -65383097 + (CAG)n Simple_repeat Simple_repeat 1 25 0 408 360 28 6 chr15 36000467 36000645 -65379876 - MIR SINE MIR -22 240 59 223 263 67 115 chr15 36001308 36001517 -65379004 + L2 LINE L2 3023 3221 -51 * 1082 266 67 29 chr15 36001514 36001890 -65378631 - L2 LINE L2 -3 3310 2921 284 233 78 41 chr15 36001937 36002088 -65378433 + MIR3 SINE MIR 4 198 -64 2386 72 0 29 chr15 36002088 36002395 -65378126 + AluY SINE Alu 1 298 -13 284 233 78 41 chr15 36002395 36002430 -65378091 + MIR3 SINE MIR 198 230 -32 210 235 59 0 chr15 36002416 36002467 -65378054 + L2 LINE L2 3209 3262 -10 * 712 302 17 0 chr15 36005275 36005510 -65375011 + MIR SINE MIR 15 253 -9 299 143 186 14 chr15 36005530 36005600 -65374921 - MIR SINE MIR -111 97 16 25 65 0 0 chr15 36007135 36007181 -65373340 + GC_rich Low_complexity Low_complexity 1 46 0 268 295 39 0 chr15 36010198 36010276 -65370245 - MIR SINE MIR -63 145 65 313 349 58 50 chr15 36010811 36011069 -65369452 - L2 LINE L2 -10 3262 3003 193 254 36 0 chr15 36011060 36011115 -65369406 - MIR3 SINE MIR -3 205 149 * 2219 129 0 0 chr15 36012487 36012790 -65367731 + AluSx SINE Alu 1 303 -9 2536 62 3 0 chr15 36012790 36013081 -65367440 + AluY SINE Alu 1 293 -18 617 62 0 0 chr15 36013275 36013355 -65367166 - AluSg/x SINE Alu -12 297 218 1059 64 14 43 chr15 36013355 36013495 -65367026 - AluY SINE Alu -175 136 1 2461 85 0 0 chr15 36013679 36013974 -65366547 - AluY SINE Alu -16 295 1 425 324 77 45 chr15 36014406 36014742 -65365779 + L2 LINE L2 1171 1517 -1797 617 276 58 17 chr15 36014781 36015082 -65365439 + Charlie2 DNA MER1_type 1 343 -2519 45 45 0 0 chr15 36015179 36015245 -65365276 + AT_rich Low_complexity Low_complexity 1 66 0 1703 171 3 75 chr15 36015258 36015403 -65365118 + AluJo SINE Alu 6 117 -195 2398 103 0 0 chr15 36015403 36015715 -65364806 + AluSx SINE Alu 1 312 0 1703 171 3 75 chr15 36015715 36015891 -65364630 + AluJo SINE Alu 117 304 -8 748 204 27 11 chr15 36015922 36016108 -65364413 + Charlie2a DNA MER1_type 1467 1655 -1207 2425 59 35 0 chr15 36016108 36016396 -65364125 + AluY SINE Alu 1 298 -13 3180 239 78 13 chr15 36016399 36017383 -65363138 + L1MEc LINE L1 15 1062 -5334 647 179 21 0 chr15 36017447 36017587 -65362934 + L1MA10 LINE L1 6188 6330 -4 388 227 21 0 chr15 36017602 36017699 -65362822 + L1MD1 LINE L1 6136 6234 -8 489 209 36 0 chr15 36017704 36017843 -65362678 + L1MEc LINE L1 1030 1173 -5223 2491 97 0 0 chr15 36017863 36018174 -65362347 + AluSx SINE Alu 1 311 -1 2001 147 3 3 chr15 36018196 36018495 -65362026 + AluJo SINE Alu 1 299 -13 962 201 0 22 chr15 36018564 36018743 -65361778 + FAM SINE Alu 1 175 0 986 275 80 111 chr15 36018858 36019406 -65361115 + L2 LINE L2 1606 2170 -1144 2215 122 10 6 chr15 36019406 36019717 -65360804 - AluSx SINE Alu 0 312 1 507 48 0 0 chr15 36019720 36019783 -65360738 - AluSq/x SINE Alu -179 133 71 986 275 80 111 chr15 36019783 36019960 -65360561 + L2 LINE L2 2172 2372 -942 2400 88 7 3 chr15 36020021 36020326 -65360195 + AluSx SINE Alu 1 306 -6 1768 150 64 0 chr15 36020352 36020646 -65359875 + AluJo SINE Alu 1 311 0 401 310 102 48 chr15 36020654 36020985 -65359536 + L2 LINE L2 2719 3121 -192 1699 176 17 7 chr15 36020985 36021280 -65359241 - AluJb SINE Alu -14 298 1 401 310 102 48 chr15 36021280 36021482 -65359039 + L2 LINE L2 3121 3311 -2 2546 41 0 3 chr15 36023158 36023451 -65357070 + AluY SINE Alu 1 292 -19 362 231 0 13 chr15 36024596 36024674 -65355847 - L2 LINE L2 -1 3271 3195 1488 159 103 11 chr15 36025036 36025307 -65355214 + AluJo SINE Alu 1 296 -16 240 377 18 18 chr15 36026314 36026428 -65354093 + MER5B DNA MER1_type 2 115 -63 2064 149 0 0 chr15 36026792 36027088 -65353433 + AluSx SINE Alu 1 296 -16 3470 96 10 25 chr15 36027151 36027486 -65353035 - MER9 LTR ERVK 0 511 185 2250 79 24 3 chr15 36027486 36027776 -65352745 + AluY SINE Alu 1 296 -15 3470 96 10 25 chr15 36027776 36027959 -65352562 - MER9 LTR ERVK -326 185 1 388 291 55 30 chr15 36028009 36028174 -65352347 - MIR SINE MIR -36 226 58 2275 98 0 16 chr15 36028210 36028515 -65352006 - AluSp SINE Alu -11 302 3 2201 141 0 0 chr15 36029683 36029981 -65350540 - AluSx SINE Alu -14 298 1 23 33 0 0 chr15 36030003 36030033 -65350488 + AT_rich Low_complexity Low_complexity 1 30 0 670 142 115 0 chr15 36030034 36030147 -65350374 - FLAM_A SINE Alu -7 126 1 471 161 124 15 chr15 36031170 36031253 -65349268 - L1MD3 LINE L1 -1 7994 7921 1220 71 35 0 chr15 36031253 36031423 -65349098 - L1PA11 LINE L1 0 6174 5999 471 161 124 15 chr15 36031423 36031476 -65349045 - L1MD3 LINE L1 -74 7921 7843 1432 155 0 14 chr15 36031476 36031689 -65348832 + AluJo SINE Alu 3 212 -100 2174 121 0 0 chr15 36031695 36031977 -65348544 - AluSq SINE Alu -30 283 2 298 194 19 29 chr15 36031986 36032089 -65348432 - L1MD3 LINE L1 -129 7866 7765 2352 93 0 7 chr15 36033570 36033870 -65346651 - AluSc SINE Alu -11 298 1 1652 110 121 43 chr15 36033870 36034151 -65346370 - AluSx SINE Alu -9 303 1 928 123 0 29 chr15 36034151 36034289 -65346232 - AluSq/x SINE Alu -179 134 1 2212 130 0 0 chr15 36034724 36035017 -65345504 + AluSg SINE Alu 1 293 -17 192 269 144 19 chr15 36035031 36035135 -65345386 + MIR SINE MIR 146 262 0 834 137 166 52 chr15 36035462 36035649 -65344872 + L1MB4 LINE L1 5917 6133 -47 2285 85 7 0 chr15 36035649 36035970 -65344551 + AluSq SINE Alu 1 323 0 834 137 166 52 chr15 36035970 36035992 -65344529 + L1MB4 LINE L1 6133 6151 -29 236 167 50 0 chr15 36036099 36036159 -65344362 - L1ME2 LINE L1 -202 5962 5900 1888 134 14 21 chr15 36036159 36036450 -65344071 - AluJo SINE Alu -23 289 1 432 174 0 10 chr15 36036475 36036573 -65343948 + FLAM_C SINE Alu 45 141 -2 1085 179 167 48 chr15 36036573 36036824 -65343697 - AluJo SINE Alu -31 281 1 230 222 125 0 chr15 36036825 36036897 -65343624 - L1ME2 LINE L1 -254 5908 5828 397 209 246 0 chr15 36036954 36037064 -65343457 - L1ME2 LINE L1 -505 5659 5523 1402 186 12 16 chr15 36037100 36037347 -65343174 + AluJo SINE Alu 1 246 -66 1013 263 39 11 chr15 36037359 36037723 -65342798 - LTR43 LTR ERV1 -53 477 176 294 130 0 0 chr15 36037922 36037968 -65342553 + AluJo SINE Alu 243 288 -14 2406 171 8 59 chr15 36037972 36038480 -65342041 - L1MD3 LINE L1 -6 7989 7508 2075 134 130 54 chr15 36038480 36038904 -65341617 + LTR12 LTR ERV1 9 464 -250 609 171 0 0 chr15 36038912 36039024 -65341497 - L1MD3 LINE L1 -472 7510 7202 228 178 110 14 chr15 36039026 36039099 -65341422 - MLT1F1 LTR MaLR -435 132 53 302 200 0 0 chr15 36039102 36039162 -65341359 - L1MD3 LINE L1 -883 7112 7053 1917 164 13 10 chr15 36039191 36039502 -65341019 - AluSx SINE Alu 0 312 1 1306 127 148 8 chr15 36039521 36039758 -65340763 - L1PA15 LINE L1 -2 6163 5894 2424 51 0 0 chr15 36039873 36040148 -65340373 - AluY SINE Alu -34 277 3 627 147 0 20 chr15 36040201 36040303 -65340218 + FLAM_A SINE Alu 20 119 -23 759 253 89 0 chr15 36040355 36040592 -65339929 - MIR SINE MIR -4 258 1 816 215 83 81 chr15 36040814 36040896 -65339625 - L1M4 LINE L1 -2457 3689 3609 2244 52 16 55 chr15 36040896 36041205 -65339316 - AluY SINE Alu -5 306 10 816 215 83 81 chr15 36041205 36041251 -65339270 - L1M4 LINE L1 -2537 3609 3565 2460 70 0 10 chr15 36041251 36041564 -65338957 - AluSg SINE Alu 0 310 1 816 215 83 81 chr15 36041564 36041900 -65338621 - L1M4 LINE L1 -2581 3565 3220 691 204 0 8 chr15 36041900 36042032 -65338489 - FLAM_A SINE Alu -2 131 1 816 215 83 81 chr15 36042032 36042045 -65338476 - L1M4 LINE L1 -2926 3220 3209 1753 197 3 3 chr15 36042047 36042357 -65338164 - AluJo SINE Alu -2 310 1 234 316 11 21 chr15 36042358 36042453 -65338068 + L2 LINE L2 2302 2395 -919 318 262 84 0 chr15 36042510 36042617 -65337904 + L1MC4a LINE L1 5319 5434 -2374 * 320 279 18 0 chr15 36042597 36042708 -65337813 + L1MC4a LINE L1 5771 5883 -1925 1474 135 38 110 chr15 36042778 36043097 -65337424 + AluJo SINE Alu 6 301 -11 2528 69 0 0 chr15 36043132 36043435 -65337086 + AluY SINE Alu 1 303 -8 443 291 39 22 chr15 36043560 36043742 -65336779 - MIR SINE MIR -31 231 47 723 140 0 0 chr15 36043781 36043888 -65336633 + FLAM_C SINE Alu 2 108 -35 28 0 0 0 chr15 36043915 36043943 -65336578 + AT_rich Low_complexity Low_complexity 1 28 0 728 161 8 0 chr15 36044149 36044273 -65336248 - FLAM_C SINE Alu -17 126 2 534 180 0 0 chr15 36044349 36044438 -65336083 + Tigger5 DNA MER2_type 1 89 -2234 * 1195 142 38 46 chr15 36044434 36044578 -65335943 + Tigger5 DNA MER2_type 2085 2228 -95 2419 99 0 0 chr15 36044578 36044880 -65335641 - AluSp SINE Alu -11 302 1 1195 142 38 46 chr15 36044880 36044975 -65335546 + Tigger5 DNA MER2_type 2228 2322 -1 917 129 8 8 chr15 36046234 36046366 -65334155 + AluJo SINE Alu 1 132 -180 2580 74 3 0 chr15 36046575 36046885 -65333636 - AluSp SINE Alu -2 311 1 308 295 112 50 chr15 36046931 36047209 -65333312 - L2 LINE L2 -374 2940 2646 2180 93 7 0 chr15 36048389 36048680 -65331841 + AluSp SINE Alu 1 293 -20 911 211 0 0 chr15 36048969 36049144 -65331377 + AluJo SINE Alu 131 305 -7 2464 62 3 0 chr15 36049549 36049855 -65330666 - AluY SINE Alu -4 307 1 1095 117 0 6 chr15 36053384 36053577 -65326944 - AluSg/x SINE Alu 0 312 134 2009 100 20 17 chr15 36053578 36053878 -65326643 - AluSq SINE Alu -12 301 1 1834 105 86 0 chr15 36057085 36057352 -65323169 + AluSx SINE Alu 1 290 -22 2135 120 0 13 chr15 36057565 36057873 -65322648 + AluSq SINE Alu 1 304 -9 2207 88 17 0 chr15 36057873 36058168 -65322353 + AluSx SINE Alu 1 300 -12 2308 185 50 4 chr15 36058170 36058625 -65321896 + MER44D DNA MER2_type 75 605 0 342 136 0 17 chr15 36059398 36059457 -65321064 + Tigger4(Zombi) DNA MER2_type 2673 2730 -1 2028 121 10 10 chr15 36059498 36059805 -65320716 + AluSq SINE Alu 1 307 -6 2041 137 0 0 chr15 36059876 36060175 -65320346 + AluSx SINE Alu 1 299 -13 2200 97 0 0 chr15 36060177 36060465 -65320056 + AluSg1 SINE Alu 1 288 -21 2157 92 3 13 chr15 36060467 36060771 -65319750 + AluSg SINE Alu 1 301 -9 233 310 97 26 chr15 36062187 36062342 -65318179 + MER5A DNA MER1_type 6 171 -18 2498 41 0 0 chr15 36062938 36063230 -65317291 - AluY SINE Alu -19 292 1 2336 103 0 0 chr15 36063239 36063551 -65316970 - AluSx SINE Alu 0 312 1 1496 120 30 86 chr15 36063562 36063890 -65316631 - AluJb SINE Alu 0 311 1 304 301 87 24 chr15 36063895 36064101 -65316420 - HAL1 LINE L1 -4 2503 2285 2149 107 0 7 chr15 36064112 36064411 -65316110 - AluSg SINE Alu -13 297 1 366 364 71 23 chr15 36065056 36065364 -65315157 + L2 LINE L2 2991 3313 0 207 277 181 48 chr15 36065373 36065539 -65314982 + L2 LINE L2 3125 3312 -1 266 284 183 12 chr15 36065812 36065981 -65314540 - L1ME3A LINE L1 -8 6162 5965 243 0 0 0 chr15 36066092 36066119 -65314402 + (TA)n Simple_repeat Simple_repeat 1 27 0 1305 176 81 15 chr15 36066179 36066440 -65314081 - AluJb SINE Alu 0 312 35 1563 151 51 34 chr15 36066464 36066756 -65313765 - AluJb SINE Alu -15 297 1 857 298 25 8 chr15 36066756 36066907 -65313614 - L1ME3A LINE L1 -313 5808 5695 2247 101 3 0 chr15 36066907 36067214 -65313307 + AluSq SINE Alu 1 308 -5 857 298 25 8 chr15 36067214 36067383 -65313138 - L1ME3A LINE L1 -426 5695 5530 217 315 11 11 chr15 36067516 36067605 -65312916 - L2 LINE L2 -9 3263 3175 2330 87 0 0 chr15 36068552 36068852 -65311669 + AluSx SINE Alu 2 301 -11 234 214 79 90 chr15 36070166 36070255 -65310266 + L2 LINE L2 3223 3310 -3 249 316 68 45 chr15 36070843 36070976 -65309545 - L2 LINE L2 -3 3269 3134 229 296 71 75 chr15 36071115 36071423 -65309098 - L2 LINE L2 -633 2681 2375 826 142 0 8 chr15 36071804 36071938 -65308583 - FLAM_C SINE Alu 0 133 1 554 203 65 0 chr15 36071938 36072061 -65308460 + MIR SINE MIR 63 193 -69 2157 85 0 0 chr15 36072068 36072349 -65308172 + AluY SINE Alu 1 281 -30 1715 161 71 0 chr15 36072687 36072967 -65307554 - AluSx SINE Alu -12 300 1 182 300 29 43 chr15 36073714 36073784 -65306737 - MIR SINE MIR -1 261 193 396 237 72 36 chr15 36073939 36074078 -65306443 + MIR SINE MIR 69 212 -50 197 297 16 16 chr15 36074455 36074519 -65306002 - L2 LINE L2 -4 3268 3205 702 346 27 12 chr15 36074758 36075093 -65305428 - MER102b DNA MER1_type 0 341 2 338 319 35 0 chr15 36075727 36075843 -65304678 + MIR SINE MIR 81 200 -62 419 315 156 44 chr15 36081828 36082450 -65298071 + L1M4c LINE L1 807 1578 -1165 23 0 0 0 chr15 36082563 36082586 -65297935 + GC_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr15 36082661 36082711 -65297810 + GC_rich Low_complexity Low_complexity 1 50 0 27 100 0 0 chr15 36082989 36083079 -65297442 + GC_rich Low_complexity Low_complexity 1 90 0 24 32 0 0 chr15 36083148 36083179 -65297342 + GC_rich Low_complexity Low_complexity 1 31 0 29 0 0 0 chr15 36083204 36083233 -65297288 + GC_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr15 36083310 36083333 -65297188 + GC_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr15 36083746 36083770 -65296751 + GC_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr15 36085556 36085578 -65294943 + (TG)n Simple_repeat Simple_repeat 1 22 0 216 0 0 0 chr15 36086703 36086727 -65293794 + (A)n Simple_repeat Simple_repeat 1 24 0 281 359 57 28 chr15 36088694 36088732 -65291789 + L3b LINE CR1 1119 1154 -429 1932 123 32 0 chr15 36088732 36089070 -65291451 + AluSx SINE Alu 1 312 0 281 359 57 28 chr15 36089070 36089279 -65291242 + L3b LINE CR1 1154 1373 -210 186 43 0 0 chr15 36089349 36089372 -65291149 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2267 66 21 3 chr15 36089424 36089712 -65290809 + AluSc SINE Alu 1 293 -16 1229 176 97 11 chr15 36090004 36090271 -65290250 - AluJb SINE Alu -18 294 5 1841 82 114 39 chr15 36090291 36090572 -65289949 - AluSp SINE Alu -11 302 1 449 320 39 0 chr15 36090578 36090731 -65289790 + MIR SINE MIR 104 262 0 2035 126 0 46 chr15 36090974 36091300 -65289221 + AluJo SINE Alu 1 311 -1 195 284 0 74 chr15 36091570 36091651 -65288870 - L2 LINE L2 -86 3227 3153 2294 85 0 22 chr15 36092312 36092629 -65287892 + AluSq SINE Alu 1 310 -3 331 287 183 30 chr15 36092953 36093117 -65287404 - MIR SINE MIR -6 256 68 193 328 205 8 chr15 36094580 36094702 -65285819 - MIR SINE MIR -81 181 36 1577 149 30 98 chr15 36095124 36095459 -65285062 + AluJb SINE Alu 1 312 0 1898 125 0 21 chr15 36097423 36097733 -65282788 - AluY SINE Alu 0 305 2 2214 70 46 20 chr15 36099184 36099486 -65281035 + AluY SINE Alu 1 310 -1 254 135 0 0 chr15 36102439 36102476 -65278045 - MIR SINE MIR -28 234 198 812 208 49 6 chr15 36102487 36102670 -65277851 + MIR SINE MIR 7 197 -65 329 250 182 0 chr15 36102700 36102788 -65277733 - MIR SINE MIR -149 113 10 2242 111 0 7 chr15 36102812 36103109 -65277412 + AluSx SINE Alu 1 295 -17 1408 187 87 14 chr15 36104167 36104456 -65276065 + AluJo SINE Alu 1 310 -2 1784 164 17 27 chr15 36104476 36104775 -65275746 + AluJo SINE Alu 1 296 -16 599 259 18 62 chr15 36104781 36105005 -65275516 - MIR SINE MIR -3 259 46 1678 167 51 0 chr15 36110022 36110298 -65270223 + AluJb SINE Alu 9 298 -14 217 298 83 0 chr15 36110658 36110742 -65269779 - MIR SINE MIR -83 179 89 339 313 17 0 chr15 36111377 36111492 -65269029 + MIR SINE MIR 98 214 -48 35 63 0 0 chr15 36112347 36112410 -65268111 + GC_rich Low_complexity Low_complexity 1 63 0 27 49 0 0 chr15 36112455 36112496 -65268025 + GC_rich Low_complexity Low_complexity 1 41 0 2320 100 16 13 chr15 36114968 36115279 -65265242 - AluSx SINE Alu 0 312 1 193 301 41 14 chr15 36115907 36115980 -65264541 + MIR SINE MIR 107 181 -81 411 191 95 19 chr15 36116363 36116468 -65264053 - MIR SINE MIR -62 200 88 228 35 0 0 chr15 36117144 36117173 -65263348 + (TCTCCC)n Simple_repeat Simple_repeat 3 31 0 2300 95 0 26 chr15 36117175 36117479 -65263042 - AluSg SINE Alu -13 297 2 1410 148 36 14 chr15 36117989 36118212 -65262309 - AluJb SINE Alu 0 312 85 386 263 226 0 chr15 36118335 36118468 -65262053 - MIR SINE MIR -52 210 48 2370 150 21 7 chr15 36118494 36118920 -65261601 - L1PA15 LINE L1 -2 6163 5732 1084 265 112 18 chr15 36119143 36119535 -65260986 - LTR16B LTR ERVL -2 462 34 2270 120 7 0 chr15 36119765 36120074 -65260447 - AluSx SINE Alu -1 311 1 2479 80 0 13 chr15 36121047 36121358 -65259163 - AluY SINE Alu -4 307 1 649 180 0 16 chr15 36122810 36122821 -65257700 - FLAM_A SINE Alu -185 126 116 3434 141 40 11 chr15 36122821 36123480 -65257041 - L1MB1 LINE L1 0 6168 5491 649 180 0 16 chr15 36123480 36123596 -65256925 - FLAM_A SINE Alu -195 116 1 3383 194 50 6 chr15 36123611 36124458 -65256063 - L1MB1 LINE L1 -678 5493 4604 423 132 26 0 chr15 36124727 36124803 -65255718 - AluJ/FRAM SINE Alu -7 305 228 2381 104 0 0 chr15 36124804 36125111 -65255410 - AluSc SINE Alu -2 307 1 719 181 13 40 chr15 36125111 36125260 -65255261 - AluJo SINE Alu -166 146 2 1845 149 20 14 chr15 36125522 36125817 -65254704 - AluJo SINE Alu -5 307 11 2278 126 0 3 chr15 36125836 36126138 -65254383 - AluSx SINE Alu -11 301 1 2101 94 56 7 chr15 36126149 36126436 -65254085 - AluY SINE Alu -10 301 1 23 33 0 0 chr15 36126612 36126642 -65253879 + AT_rich Low_complexity Low_complexity 1 30 0 250 269 58 83 chr15 36127088 36127244 -65253277 + MER103 DNA DNA 8 159 -7 343 118 0 0 chr15 36127369 36127420 -65253101 - AluSg/x SINE Alu -176 124 74 1621 164 39 4 chr15 36127436 36127716 -65252805 - AluJb SINE Alu -9 303 14 1958 210 82 6 chr15 36127775 36128265 -65252256 + L1M3f LINE L1 1 527 -4801 1487 155 109 21 chr15 36128415 36128699 -65251822 + AluSq SINE Alu 1 309 -4 816 186 51 6 chr15 36128738 36128894 -65251627 + AluSg/x SINE Alu 127 289 -21 2477 61 0 0 chr15 36128899 36129193 -65251328 + AluY SINE Alu 1 294 -17 1179 150 24 29 chr15 36129235 36129442 -65251079 - AluJo SINE Alu -92 220 15 2023 217 83 6 chr15 36129504 36130033 -65250488 + L1M3f LINE L1 3 572 -4756 1552 150 108 21 chr15 36130150 36130437 -65250084 + AluSx SINE Alu 1 312 0 711 170 35 70 chr15 36130470 36130641 -65249880 + AluJb SINE Alu 129 293 -19 1193 107 17 120 chr15 36130682 36130915 -65249606 - AluJo SINE Alu -91 221 13 1640 208 45 95 chr15 36130972 36131438 -65249083 + L1M3f LINE L1 4 475 -4853 258 77 0 0 chr15 36131438 36131477 -65249044 + AluS SINE Alu 54 92 -210 1640 208 45 95 chr15 36131477 36131573 -65248948 + L1M3f LINE L1 475 574 -4754 2329 88 3 0 chr15 36131708 36132003 -65248518 + AluSx SINE Alu 1 296 -16 1751 166 10 10 chr15 36132094 36132401 -65248120 + AluJb SINE Alu 5 311 -1 2338 90 7 0 chr15 36132422 36132723 -65247798 - AluSp SINE Alu -10 303 1 382 285 36 22 chr15 36132938 36133075 -65247446 + MIR SINE MIR 7 145 -117 1620 218 65 65 chr15 36133240 36133759 -65246762 + MLT2B1 LTR ERVL 1 519 -1 1505 189 15 11 chr15 36133759 36133904 -65246617 - AluJb SINE Alu -31 281 138 234 0 0 0 chr15 36133904 36133930 -65246591 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1324 203 7 43 chr15 36133938 36134082 -65246439 + AluJb SINE Alu 1 130 -182 486 0 0 0 chr15 36134082 36134136 -65246385 + (TA)n Simple_repeat Simple_repeat 2 55 0 1324 203 7 43 chr15 36134136 36134292 -65246229 + AluJb SINE Alu 130 290 -22 1505 189 15 11 chr15 36134292 36134407 -65246114 - AluJb SINE Alu -180 132 11 993 328 64 31 chr15 36135529 36135936 -65244585 + L2 LINE L2 1773 2206 -1108 1515 188 12 59 chr15 36135936 36136256 -65244265 - AluJo SINE Alu -7 305 1 993 328 64 31 chr15 36136256 36136430 -65244091 + L2 LINE L2 2206 2373 -941 1304 148 31 4 chr15 36136455 36136684 -65243837 - MSTB LTR MaLR 0 426 192 2389 98 3 7 chr15 36136684 36136989 -65243532 - AluSc SINE Alu -5 304 1 378 341 109 16 chr15 36136990 36137643 -65242878 + L2 LINE L2 2376 3096 -176 1962 149 3 19 chr15 36137876 36138184 -65242337 + AluJo SINE Alu 1 303 -9 2703 52 0 0 chr15 36138377 36138682 -65241839 + AluY SINE Alu 1 305 -6 2343 93 0 0 chr15 36139352 36139642 -65240879 - AluSx SINE Alu -22 290 1 443 288 60 90 chr15 36139838 36140105 -65240416 + L2 LINE L2 3014 3272 0 612 268 38 24 chr15 36140848 36140948 -65239573 - MIR SINE MIR -3 259 162 1637 190 23 16 chr15 36140948 36141123 -65239398 - AluJo SINE Alu 0 312 133 2371 104 0 13 chr15 36141123 36141431 -65239090 - AluSx SINE Alu -8 304 1 1637 190 23 16 chr15 36141431 36141565 -65238956 - AluJo SINE Alu -179 133 1 612 268 38 24 chr15 36141565 36141673 -65238848 - MIR SINE MIR -100 162 48 200 292 192 0 chr15 36141724 36141854 -65238667 + MIR SINE MIR 37 191 -71 1692 128 42 3 chr15 36141877 36142189 -65238332 + MER33 DNA MER1_type 1 324 0 352 294 85 17 chr15 36142695 36142872 -65237649 - L3 LINE CR1 -770 807 619 562 256 114 68 chr15 36143011 36143255 -65237266 - MLT1J2 LTR MaLR -11 439 173 2389 95 0 0 chr15 36143255 36143551 -65236970 - AluSg SINE Alu -14 296 1 562 256 114 68 chr15 36143551 36143657 -65236864 - MLT1J2 LTR MaLR -277 173 73 2208 119 0 7 chr15 36143752 36144055 -65236466 - AluSx SINE Alu -11 301 1 201 242 48 48 chr15 36144627 36144689 -65235832 + L2 LINE L2 3201 3262 -10 1946 125 0 38 chr15 36145013 36145302 -65235219 + AluJb SINE Alu 14 291 -21 2357 81 7 0 chr15 36145432 36145717 -65234804 + AluSx SINE Alu 3 289 -23 195 235 0 0 chr15 36145717 36145768 -65234753 + (TA)n Simple_repeat Simple_repeat 2 52 0 2150 83 7 4 chr15 36145894 36146200 -65234321 - AluY SINE Alu 0 308 2 646 282 100 3 chr15 36146294 36146623 -65233898 - L1ME3A LINE L1 -231 5947 5571 406 294 176 8 chr15 36147136 36147391 -65233130 + L1ME LINE L1 5522 5819 -302 2342 33 40 30 chr15 36147398 36147698 -65232823 + AluY SINE Alu 1 303 -8 2258 76 20 20 chr15 36147702 36148003 -65232518 + AluSg SINE Alu 1 301 -9 1154 214 20 33 chr15 36148118 36148330 -65232191 + MLT1A1 LTR MaLR 1 209 -156 2398 116 19 8 chr15 36148330 36148701 -65231820 + THE1C LTR MaLR 1 375 0 1154 214 20 33 chr15 36148701 36148791 -65231730 + MLT1A1 LTR MaLR 209 299 -66 420 309 45 20 chr15 36148821 36149026 -65231495 - L1ME LINE L1 -404 5717 5511 305 284 126 32 chr15 36149123 36149313 -65231208 + L2 LINE L2 2989 3196 -117 2192 113 17 0 chr15 36149350 36149651 -65230870 + AluSg SINE Alu 1 306 -4 355 200 163 0 chr15 36149763 36149843 -65230678 + L2 LINE L2 3190 3282 -31 1746 136 68 10 chr15 36149988 36150282 -65230239 + AluJb SINE Alu 1 311 -1 392 262 98 8 chr15 36150284 36150406 -65230115 + L1ME4a LINE L1 5769 5901 -220 1365 169 51 0 chr15 36151127 36151381 -65229140 + AluJo SINE Alu 37 303 -9 1298 109 5 0 chr15 36151490 36151676 -65228845 + AluSg/x SINE Alu 118 305 0 1443 154 30 0 chr15 36151676 36151909 -65228612 - L1PB4 LINE L1 -12 6144 5905 243 97 0 0 chr15 36151914 36151945 -65228576 - U6 snRNA snRNA -5 102 72 2015 119 18 181 chr15 36151945 36151983 -65228538 - MSTB LTR MaLR 0 426 383 1658 133 53 14 chr15 36151983 36152268 -65228253 + AluJo SINE Alu 1 296 -16 2015 119 18 181 chr15 36152268 36152681 -65227840 - MSTB LTR MaLR -43 383 62 2123 107 7 3 chr15 36152681 36152981 -65227540 - AluSx SINE Alu -11 301 1 2015 119 18 181 chr15 36152981 36153030 -65227491 - MSTB LTR MaLR -364 62 7 641 75 0 0 chr15 36153031 36153111 -65227410 + AluY SINE Alu 2 81 -229 297 0 0 0 chr15 36153222 36153255 -65227266 + (A)n Simple_repeat Simple_repeat 1 33 0 3072 122 103 60 chr15 36153422 36154021 -65226500 - MER51A LTR ERV1 -9 625 1 2041 112 3 10 chr15 36154116 36154419 -65226102 - AluSx SINE Alu -11 301 1 1893 67 3 131 chr15 36154555 36154869 -65225652 + LTR12 LTR ERV1 1 274 -440 318 291 10 0 chr15 36154881 36154984 -65225537 + LTR30 LTR ERV1 540 643 -79 615 97 86 0 chr15 36154985 36155078 -65225443 + LTR12 LTR ERV1 481 581 -133 228 67 0 0 chr15 36155149 36155179 -65225342 + (CA)n Simple_repeat Simple_repeat 2 31 0 755 152 120 73 chr15 36155265 36155383 -65225138 + MER3 DNA MER1_type 10 121 -88 2195 97 3 0 chr15 36155383 36155691 -65224830 - AluSg1 SINE Alu 0 309 1 1906 142 0 3 chr15 36155693 36155996 -65224525 - AluSx SINE Alu -10 302 1 1683 142 0 0 chr15 36156000 36156254 -65224267 - AluSx SINE Alu -19 293 40 755 152 120 73 chr15 36156254 36156318 -65224203 + MER3 DNA MER1_type 123 209 0 412 292 53 18 chr15 36156666 36156779 -65223742 + L2 LINE L2 3152 3268 -4 2175 81 14 10 chr15 36156973 36157268 -65223253 + AluSx SINE Alu 1 296 -16 218 293 122 0 chr15 36157536 36157618 -65222903 + L2 LINE L2 3156 3247 -25 2021 114 0 3 chr15 36157921 36158218 -65222303 + AluSx SINE Alu 1 296 -16 2418 77 0 0 chr15 36158218 36158528 -65221993 + AluY SINE Alu 1 310 -1 1341 174 39 63 chr15 36158546 36158797 -65221724 + L1M3 LINE L1 3978 4221 -1925 188 35 35 0 chr15 36158797 36158826 -65221695 + (TA)n Simple_repeat Simple_repeat 1 30 0 1341 174 39 63 chr15 36158826 36158907 -65221614 + L1M3 LINE L1 4221 4302 -1844 1848 113 0 0 chr15 36159007 36159332 -65221189 + AluSx SINE Alu 30 354 0 1989 172 24 16 chr15 36159332 36159514 -65221007 + L1M3 LINE L1 5130 5309 -862 1708 155 57 39 chr15 36159514 36159850 -65220671 - MER2 DNA MER2_type -2 342 1 1989 172 24 16 chr15 36159850 36160174 -65220347 + L1M3 LINE L1 5309 5641 -530 783 228 5 0 chr15 36160175 36160368 -65220153 - L1M4 LINE L1 -921 5225 5032 1121 209 0 0 chr15 36160368 36160579 -65219942 - AluJo SINE Alu -101 211 1 952 177 44 81 chr15 36160580 36160828 -65219693 - L1M4 LINE L1 -1150 4996 4758 710 142 7 35 chr15 36160819 36160960 -65219561 - L1M4 LINE L1 -746 5432 5296 * 3740 132 65 12 chr15 36160974 36161695 -65218826 + L1MB5 LINE L1 5259 6138 -36 782 219 6 30 chr15 36161695 36161864 -65218657 - FRAM SINE Alu -16 160 1 227 149 0 0 chr15 36161864 36161911 -65218610 + L1MB5 LINE L1 6128 6174 0 552 263 31 94 chr15 36162968 36163077 -65217444 + MIR SINE MIR 53 142 -120 2277 90 3 3 chr15 36163077 36163389 -65217132 + AluSp SINE Alu 1 312 -1 552 263 31 94 chr15 36163389 36163503 -65217018 + MIR SINE MIR 142 262 0 486 68 55 14 chr15 36163815 36163888 -65216633 - U6 snRNA snRNA -31 76 1 461 196 116 14 chr15 36163892 36164030 -65216491 - L1MC4 LINE L1 0 8042 7891 215 59 0 29 chr15 36164628 36164662 -65215859 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 376 226 94 0 chr15 36165116 36165222 -65215299 + MIR SINE MIR 67 182 -80 2747 133 19 23 chr15 36165531 36165961 -65214560 - MSTC LTR MaLR 0 428 1 2010 125 0 0 chr15 36165991 36166280 -65214241 + AluSx SINE Alu 5 293 -19 1164 185 0 34 chr15 36166282 36166520 -65214001 + AluSg/x SINE Alu 76 305 -7 1913 133 31 0 chr15 36166534 36166827 -65213694 - AluSx SINE Alu -10 302 1 663 272 78 19 chr15 36166846 36167103 -65213418 + L1MC4a LINE L1 5622 5893 -1915 250 271 0 29 chr15 36167106 36167176 -65213345 + L2 LINE L2 3244 3311 -2 1025 72 0 0 chr15 36168005 36168130 -65212391 + AluSq/x SINE Alu 11 135 -177 1940 119 7 7 chr15 36168130 36168424 -65212097 + AluSg1 SINE Alu 1 294 -15 1271 171 67 20 chr15 36168430 36168728 -65211793 + AluJo SINE Alu 1 312 0 3354 186 39 35 chr15 36168730 36169001 -65211520 - L1ME2 LINE L1 -55 6109 5841 2360 42 7 13 chr15 36169001 36169310 -65211211 + AluY SINE Alu 1 307 -4 3354 186 39 35 chr15 36169310 36169807 -65210714 - L1ME2 LINE L1 -323 5841 5338 1871 74 0 0 chr15 36169921 36170152 -65210369 - AluSc SINE Alu -76 233 3 587 80 45 0 chr15 36170154 36170242 -65210279 + L1MA3 LINE L1 6211 6302 -3 370 225 45 0 chr15 36170259 36170348 -65210173 + MIR SINE MIR 141 233 -29 616 257 61 0 chr15 36170858 36171006 -65209515 + MIR SINE MIR 36 192 -70 1934 130 7 16 chr15 36173361 36173703 -65206818 - AluSx SINE Alu 0 312 1 2144 108 0 13 chr15 36174545 36174861 -65205660 + AluSx SINE Alu 1 312 0 484 212 36 123 chr15 36174936 36175095 -65205426 - L1MC5 LINE L1 0 8042 7871 1856 150 3 0 chr15 36175095 36175381 -65205140 - AluSx SINE Alu -25 287 1 484 212 36 123 chr15 36175381 36175627 -65204894 - L1MC5 LINE L1 -171 7871 7697 248 250 10 0 chr15 36175627 36175723 -65204798 + CT-rich Low_complexity Low_complexity 2 98 0 2023 172 13 25 chr15 36175760 36176155 -65204366 - L1MC4 LINE L1 -364 7678 7289 2028 129 0 3 chr15 36176219 36176522 -65203999 - AluSg SINE Alu -8 302 1 197 271 85 0 chr15 36176624 36176683 -65203838 - L2 LINE L2 0 3313 3250 965 312 28 19 chr15 36176933 36177296 -65203225 - MLT1I LTR MaLR -18 391 57 2197 87 13 3 chr15 36177369 36177668 -65202853 - AluSq SINE Alu -11 302 1 642 252 115 53 chr15 36177691 36178125 -65202396 + L1MC5 LINE L1 7330 7809 -152 2164 91 3 0 chr15 36178125 36178411 -65202110 + AluSp SINE Alu 1 287 -26 642 252 115 53 chr15 36178411 36178543 -65201978 + L1MC5 LINE L1 7809 7931 -30 1826 123 3 7 chr15 36178589 36178896 -65201625 + AluSg SINE Alu 1 306 0 602 135 0 19 chr15 36179066 36179170 -65201351 - AluJo/FRAM SINE Alu -2 310 209 * 707 111 127 24 chr15 36179167 36179293 -65201228 + AluJo/FRAM SINE Alu 164 302 -10 746 234 98 96 chr15 36179316 36179584 -65200937 + L1ME4a LINE L1 5558 5824 -297 1802 164 3 3 chr15 36179584 36179888 -65200633 + AluJb SINE Alu 1 304 -8 746 234 98 96 chr15 36179888 36180182 -65200339 + L1ME4a LINE L1 5824 6121 0 474 18 0 0 chr15 36180586 36180641 -65199880 + (TG)n Simple_repeat Simple_repeat 2 56 0 3663 185 103 34 chr15 36181061 36181156 -65199365 - L1MB7 LINE L1 -31 6153 6066 2673 144 21 16 chr15 36181156 36181587 -65198934 - Tigger2a DNA MER2_type -1 433 1 3663 185 103 34 chr15 36181587 36183006 -65197515 - L1MB7 LINE L1 -118 6066 4493 1401 148 12 4 chr15 36183207 36183451 -65197070 - AluSq SINE Alu -2 311 66 471 102 0 0 chr15 36183451 36183510 -65197011 + AluSq/x SINE Alu 64 122 -190 453 138 0 0 chr15 36183508 36183573 -65196948 - AluJ/FLAM SINE Alu -246 66 2 * 1392 124 14 0 chr15 36183615 36183832 -65196689 + AluSp SINE Alu 6 225 -88 2168 63 7 14 chr15 36183946 36184231 -65196290 - AluY SINE Alu -28 283 1 859 98 0 0 chr15 36184231 36184353 -65196168 - FLAM_C SINE Alu -8 135 14 472 272 102 5 chr15 36184993 36185199 -65195322 + L1ME4a LINE L1 5843 6068 -53 2141 83 31 0 chr15 36185230 36185519 -65195002 + AluSg SINE Alu 1 298 -12 478 319 43 0 chr15 36185583 36185724 -65194797 + MIR3 SINE MIR 14 160 -48 349 285 99 40 chr15 36186070 36186221 -65194300 + MIR SINE MIR 103 262 0 225 0 0 0 chr15 36186494 36186519 -65194002 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 515 182 0 0 chr15 36187548 36187647 -65192874 + L1MB7 LINE L1 6078 6176 -8 400 228 61 9 chr15 36187802 36187916 -65192605 - LTR67 LTR ERVL -10 547 428 1404 86 0 0 chr15 36188199 36188386 -65192135 - AluSg/x SINE Alu -2 310 124 320 26 0 0 chr15 36188389 36188427 -65192094 - AluY SINE Alu -270 38 1 180 0 0 0 chr15 36188499 36188519 -65192002 + (A)n Simple_repeat Simple_repeat 1 20 0 317 225 0 28 chr15 36188856 36188927 -65191594 + MIR SINE MIR 160 228 -34 293 274 0 0 chr15 36188992 36189054 -65191467 + MER5A DNA MER1_type 128 189 0 1070 292 90 24 chr15 36189070 36189525 -65190996 + LTR67 LTR ERVL 2 486 -71 300 47 0 0 chr15 36189566 36189609 -65190912 - MER3 DNA MER1_type -22 187 145 1456 185 11 8 chr15 36189617 36189882 -65190639 - AluJb SINE Alu -26 286 21 1616 103 0 5 chr15 36189894 36190118 -65190403 - AluSx SINE Alu -89 223 1 251 200 0 0 chr15 36190145 36190185 -65190336 + Alu SINE Alu 2 41 -261 431 91 0 0 chr15 36190203 36190269 -65190252 - Alu SINE Alu 0 310 245 2069 105 7 7 chr15 36190557 36190851 -65189670 - AluSx SINE Alu -18 294 1 290 283 0 0 chr15 36190971 36191031 -65189490 + L2 LINE L2 3212 3271 -1 401 247 111 37 chr15 36192063 36192225 -65188296 + MIR SINE MIR 2 175 -87 2422 58 3 3 chr15 36192392 36192703 -65187818 + AluY SINE Alu 1 311 0 279 0 0 0 chr15 36192803 36192834 -65187687 + (TG)n Simple_repeat Simple_repeat 2 32 0 1650 134 47 0 chr15 36192834 36193109 -65187412 - L1MB3 LINE L1 -15 6168 5881 1887 157 0 0 chr15 36193119 36193431 -65187090 - AluJb SINE Alu 0 312 1 2087 88 13 20 chr15 36193908 36194213 -65186308 - AluSq SINE Alu -3 310 8 374 166 0 6 chr15 36194741 36194813 -65185708 - AluS SINE Alu -245 57 1 6138 115 26 35 chr15 36194813 36195004 -65185517 - L1PB3 LINE L1 -11 6143 5952 2198 98 0 16 chr15 36195004 36195319 -65185202 - AluSg SINE Alu 0 310 1 6138 115 26 35 chr15 36195319 36196204 -65184317 - L1PB3 LINE L1 -202 5952 5072 2260 76 0 3 chr15 36196204 36196494 -65184027 + AluSc SINE Alu 1 289 -20 6138 115 26 35 chr15 36196494 36196716 -65183805 - L1PB3 LINE L1 -1082 5072 4850 1419 157 32 36 chr15 36197124 36197404 -65183117 + AluJo SINE Alu 1 279 -33 189 171 0 0 chr15 36197405 36197440 -65183081 + GA-rich Low_complexity Low_complexity 1 35 0 1980 100 0 14 chr15 36197440 36197719 -65182802 + AluSx SINE Alu 33 307 -5 2266 100 0 0 chr15 36199656 36199956 -65180565 - AluSx SINE Alu -12 300 1 198 356 53 61 chr15 36200019 36200151 -65180370 - L2 LINE L2 -19 3253 3123 1011 211 81 0 chr15 36200344 36200567 -65179954 + MIR SINE MIR 22 262 0 558 0 0 0 chr15 36202541 36202603 -65177918 + (CA)n Simple_repeat Simple_repeat 2 63 0 1014 162 28 11 chr15 36203709 36203888 -65176633 - FRAM SINE Alu -3 173 1 2218 81 13 10 chr15 36203998 36204308 -65176213 - AluSp SINE Alu -2 311 1 1713 169 6 28 chr15 36204318 36204637 -65175884 - AluJb SINE Alu 0 312 1 1311 141 13 18 chr15 36204670 36204897 -65175624 - AluJb SINE Alu -2 310 85 2357 55 0 0 chr15 36205114 36205407 -65175114 - AluY SINE Alu -18 293 1 470 332 77 38 chr15 36206814 36207389 -65173132 - L2 LINE L2 0 3272 2678 206 174 0 22 chr15 36207465 36207511 -65173010 + T-rich Low_complexity Low_complexity 2 46 0 1056 191 97 29 chr15 36207539 36208054 -65172467 + MLT1G1 LTR MaLR 1 624 0 277 273 26 0 chr15 36208164 36208241 -65172280 - L2 LINE L2 -650 2664 2586 3838 227 96 74 chr15 36208249 36209505 -65171016 + L1MCc LINE L1 25 1251 -5468 2001 119 7 3 chr15 36209505 36209799 -65170722 + AluSx SINE Alu 1 295 -17 3838 227 96 74 chr15 36209799 36210019 -65170502 + L1MCc LINE L1 1251 1465 -5254 1912 149 10 0 chr15 36210019 36210328 -65170193 + AluJb SINE Alu 1 312 0 3838 227 96 74 chr15 36210328 36210612 -65169909 + L1MCc LINE L1 1465 1831 -4888 213 39 0 0 chr15 36211151 36211177 -65169344 + (TG)n Simple_repeat Simple_repeat 1 26 0 757 338 186 2 chr15 36211255 36211690 -65168831 + L3 LINE CR1 362 876 -701 1770 138 3 17 chr15 36211996 36212287 -65168234 + AluJo SINE Alu 7 293 -19 258 202 44 0 chr15 36212296 36212364 -65168157 - MLT1K LTR MaLR -339 249 137 373 236 121 55 chr15 36212510 36212675 -65167846 + L3 LINE CR1 931 1106 -471 751 168 74 124 chr15 36212676 36212757 -65167764 - LTR47A LTR ERVL 0 452 369 2101 113 0 0 chr15 36212757 36213066 -65167455 + AluSg SINE Alu 3 311 0 751 168 74 124 chr15 36213066 36213185 -65167336 - LTR47A LTR ERVL -83 369 261 1450 171 57 13 chr15 36213333 36213632 -65166889 - AluJb SINE Alu 0 312 1 2083 64 67 3 chr15 36213639 36213921 -65166600 - AluY SINE Alu -11 300 1 1227 271 118 9 chr15 36214039 36214464 -65166057 + L3 LINE CR1 1102 1572 -5 399 248 195 65 chr15 36214719 36214882 -65165639 - LTR16C LTR ERVL -29 462 322 2142 86 24 0 chr15 36214882 36215174 -65165347 + AluSx SINE Alu 1 299 -13 399 248 195 65 chr15 36215174 36215333 -65165188 - LTR16C LTR ERVL -169 322 98 2163 109 0 3 chr15 36215839 36216152 -65164369 + AluSx SINE Alu 1 312 0 369 0 0 0 chr15 36216626 36216667 -65163854 + (TG)n Simple_repeat Simple_repeat 1 41 0 2157 106 0 0 chr15 36218548 36218840 -65161681 - AluSx SINE Alu -20 292 1 194 287 104 61 chr15 36220521 36220636 -65159885 + L2 LINE L2 2728 2847 -467 347 182 13 0 chr15 36220878 36220955 -65159566 + (TA)n Simple_repeat Simple_repeat 1 78 0 315 250 86 66 chr15 36221002 36221154 -65159367 + L1 LINE L1 5089 5243 -903 2067 104 21 0 chr15 36221172 36221461 -65159060 + AluSg SINE Alu 1 295 -15 1930 226 82 41 chr15 36221482 36222029 -65158492 + L1MC4a LINE L1 5275 5853 -1955 1670 166 10 13 chr15 36222029 36222337 -65158184 + AluJo SINE Alu 1 307 -5 1930 226 82 41 chr15 36222337 36222426 -65158095 + L1MC4a LINE L1 5853 5937 -1871 2135 98 0 3 chr15 36222636 36222923 -65157598 - AluSc SINE Alu -23 286 1 267 169 20 0 chr15 36224210 36224265 -65156256 + L1ME2 LINE L1 5543 5601 -563 719 58 0 0 chr15 36224266 36224353 -65156168 + AluJ/FLAM SINE Alu 2 88 -224 1231 187 180 76 chr15 36224373 36224696 -65155825 + L1ME2 LINE L1 5653 6069 -95 249 88 0 0 chr15 36224696 36224730 -65155791 + MER3 DNA MER1_type 16 49 -160 1231 187 180 76 chr15 36224730 36224834 -65155687 + L1ME2 LINE L1 6069 6161 -3 243 88 0 0 chr15 36224839 36224873 -65155648 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 950 155 42 18 chr15 36224874 36225042 -65155479 - AluJb SINE Alu -34 278 107 1535 110 51 12 chr15 36225060 36225314 -65155207 + L1MA3 LINE L1 5881 6144 -161 2101 101 3 17 chr15 36225314 36225450 -65155071 + AluSx SINE Alu 1 137 -175 2214 90 3 13 chr15 36225450 36225762 -65154759 + AluSc SINE Alu 1 309 0 2101 101 3 17 chr15 36225762 36225922 -65154599 + AluSx SINE Alu 137 293 -19 2034 86 7 33 chr15 36226056 36226357 -65154164 - AluSg SINE Alu -17 293 1 33 25 0 0 chr15 36226453 36226493 -65154028 + AT_rich Low_complexity Low_complexity 1 40 0 1599 207 0 6 chr15 36226559 36226873 -65153648 - AluJb SINE Alu 0 312 1 835 132 7 15 chr15 36226873 36227009 -65153512 - AluJo SINE Alu -177 135 1 2117 72 3 21 chr15 36227346 36227637 -65152884 + AluY SINE Alu 1 286 -25 1112 143 12 0 chr15 36228031 36228199 -65152322 + MLT1C LTR MaLR 250 419 -48 1384 163 26 83 chr15 36228203 36228360 -65152161 - AluJo SINE Alu -17 295 163 2131 118 0 7 chr15 36228360 36228664 -65151857 - AluSx SINE Alu -10 302 1 1384 163 26 83 chr15 36228664 36228819 -65151702 - AluJo SINE Alu -149 163 1 2176 122 0 6 chr15 36229077 36229389 -65151132 + AluSx SINE Alu 1 310 -2 972 114 51 0 chr15 36230510 36230668 -65149853 - AluJ SINE Alu -6 306 141 786 213 0 0 chr15 36230672 36230895 -65149626 - FLAM_C SINE Alu 0 224 2 488 206 90 86 chr15 36231060 36231452 -65149069 - LTR4 LTR ERV1 0 596 112 1418 106 0 0 chr15 36231608 36231807 -65148714 + AluSg/x SINE Alu 100 298 -12 225 317 0 24 chr15 36232087 36232169 -65148352 - L2 LINE L2 -225 3047 2968 488 148 23 23 chr15 36232305 36232393 -65148128 - Charlie4a DNA MER1_type 0 508 421 510 174 183 17 chr15 36232401 36232516 -65148005 - AluJ SINE Alu -177 135 2 1250 201 99 57 chr15 36232516 36232639 -65147882 - Charlie4a DNA MER1_type -1522 439 323 2115 114 0 3 chr15 36232639 36232938 -65147583 - AluSx SINE Alu -14 298 1 1250 201 99 57 chr15 36232938 36233217 -65147304 - Charlie4a DNA MER1_type -1638 323 20 455 269 189 19 chr15 36233588 36233800 -65146721 + MIR SINE MIR 1 248 -14 755 0 0 0 chr15 36234287 36234369 -65146152 - tRNA-Ser-AGC tRNA tRNA -3 82 1 826 211 100 0 chr15 36236101 36236291 -65144230 + MER3 DNA MER1_type 1 209 0 539 203 14 43 chr15 36236379 36236517 -65144004 - MER58C DNA MER1_type -22 193 60 637 115 97 73 chr15 36236562 36236727 -65143794 - MER119 DNA MER1_type -36 547 379 808 143 0 0 chr15 36236729 36236862 -65143659 - AluSg/x SINE Alu -2 308 176 444 259 15 7 chr15 36236895 36237112 -65143409 - FLAM_C SINE Alu 0 224 7 599 192 0 0 chr15 36237670 36237790 -65142731 + AluSp/q SINE Alu 185 304 -9 550 284 8 0 chr15 36237880 36238007 -65142514 - MER119 DNA MER1_type -448 135 8 1785 131 0 73 chr15 36238015 36238343 -65142178 - AluSx SINE Alu -8 304 1 710 183 7 0 chr15 36238660 36238797 -65141724 + AluSg SINE Alu 3 140 -170 387 321 15 30 chr15 36238834 36238968 -65141553 + G-rich Low_complexity Low_complexity 6 137 0 323 270 7 33 chr15 36238981 36239133 -65141388 + G-rich Low_complexity Low_complexity 1 148 0 195 42 0 0 chr15 36239366 36239390 -65141131 + (A)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr15 36239390 36239410 -65141111 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1746 153 3 0 chr15 36239449 36239743 -65140778 - AluJb SINE Alu -17 295 1 400 231 10 0 chr15 36239750 36239854 -65140667 - L1M4 LINE L1 -2228 3918 3814 1102 128 0 0 chr15 36239854 36240018 -65140503 - FAM SINE Alu -4 45 1 353 260 10 0 chr15 36240038 36240134 -65140387 - L1M4 LINE L1 -2318 3828 3732 2022 124 7 0 chr15 36240136 36240435 -65140086 - AluSq SINE Alu -12 301 1 248 222 46 65 chr15 36240571 36240679 -65139842 + AluJb SINE Alu 121 226 -76 1804 154 42 27 chr15 36241191 36241522 -65138999 + MER1B DNA MER1_type 1 336 -1 2003 45 48 31 chr15 36241712 36242003 -65138518 + AluY SINE Alu 1 296 -15 1962 54 88 44 chr15 36242020 36242179 -65138342 - AluY SINE Alu -4 307 156 1981 67 11 25 chr15 36242179 36242462 -65138059 - AluY SINE Alu -1 310 32 1962 54 88 44 chr15 36242462 36242596 -65137925 - AluY SINE Alu -155 156 1 2274 89 7 0 chr15 36242641 36242945 -65137576 - AluSp SINE Alu -7 306 1 2194 47 11 11 chr15 36243250 36243529 -65136992 - L1PA6 LINE L1 -2 6152 5874 21 0 0 0 chr15 36243652 36243673 -65136848 + AT_rich Low_complexity Low_complexity 1 21 0 2707 165 2 11 chr15 36243693 36244148 -65136373 - MER66B LTR ERV1 -35 451 1 329 0 24 0 chr15 36244164 36244205 -65136316 + (CAT)n Simple_repeat Simple_repeat 2 43 0 663 225 0 0 chr15 36244429 36244558 -65135963 - FLAM_A SINE Alu -4 129 1 655 319 46 25 chr15 36244558 36244836 -65135685 + MER102a DNA MER1_type 44 330 0 1651 147 18 7 chr15 36245508 36245793 -65134728 - AluSx SINE Alu -24 288 1 428 326 102 58 chr15 36245793 36246226 -65134295 - MLT1K LTR MaLR -46 542 91 1432 201 10 29 chr15 36246635 36246807 -65133714 - AluJo SINE Alu -5 307 142 1722 162 10 3 chr15 36246807 36247103 -65133418 - AluJb SINE Alu -14 298 1 1432 201 10 29 chr15 36247103 36247243 -65133278 - AluJo SINE Alu -170 142 1 535 178 30 0 chr15 36247255 36247356 -65133165 - U13 snRNA snRNA 0 104 1 3114 115 17 11 chr15 36247736 36248206 -65132315 + L1MB3 LINE L1 5383 5855 -328 1453 121 163 15 chr15 36248235 36248499 -65132022 + AluSg1 SINE Alu 1 303 -6 2127 100 3 10 chr15 36248506 36248805 -65131716 + AluSp SINE Alu 3 299 -14 260 230 139 0 chr15 36249083 36249168 -65131353 + L1 LINE L1 4030 4126 -2020 1781 157 0 23 chr15 36249169 36249474 -65131047 + AluJo SINE Alu 1 298 -14 354 250 110 44 chr15 36249655 36249791 -65130730 + L2 LINE L2 3169 3313 0 207 0 0 0 chr15 36249888 36249911 -65130610 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 862 156 95 22 chr15 36249924 36250103 -65130418 + AluJb SINE Alu 112 303 -9 1649 167 28 11 chr15 36250459 36250746 -65129775 + AluJo SINE Alu 1 292 -20 1917 125 7 4 chr15 36250958 36251238 -65129283 - AluJb SINE Alu -30 282 2 2303 101 0 13 chr15 36251290 36251598 -65128923 - AluSg SINE Alu -6 304 1 25 0 0 0 chr15 36251643 36251668 -65128853 + AT_rich Low_complexity Low_complexity 1 25 0 38 51 0 0 chr15 36251708 36251767 -65128754 + AT_rich Low_complexity Low_complexity 1 59 0 21 71 0 0 chr15 36251889 36251931 -65128590 + AT_rich Low_complexity Low_complexity 1 42 0 23 54 0 0 chr15 36251952 36251989 -65128532 + AT_rich Low_complexity Low_complexity 1 37 0 351 242 11 21 chr15 36251989 36252084 -65128437 + L1MC4a LINE L1 5348 5441 -2367 2062 97 3 24 chr15 36252089 36252227 -65128294 + AluSx SINE Alu 1 140 -184 2268 95 0 16 chr15 36252227 36252533 -65127988 + AluSc SINE Alu 1 301 -8 2062 97 3 24 chr15 36252533 36252724 -65127797 + AluSx SINE Alu 140 324 0 1268 256 11 7 chr15 36252727 36253008 -65127513 + AluSg SINE Alu 1 282 -28 269 456 0 41 chr15 36253009 36253156 -65127365 + G-rich Low_complexity Low_complexity 1 141 0 279 464 0 0 chr15 36253200 36253310 -65127211 + G-rich Low_complexity Low_complexity 1 110 0 830 235 0 17 chr15 36253466 36253700 -65126821 - AluSc SINE Alu -73 236 7 858 281 81 27 chr15 36253760 36254170 -65126351 + L1MC4a LINE L1 5536 5912 -252 23 0 0 0 chr15 36254420 36254443 -65126078 + AT_rich Low_complexity Low_complexity 1 23 0 1164 146 0 0 chr15 36254493 36254658 -65125863 - AluSp SINE Alu -15 298 134 305 24 24 0 chr15 36254658 36254700 -65125821 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 2101 80 0 24 chr15 36254700 36254987 -65125534 - AluY SINE Alu -30 281 2 2250 75 14 10 chr15 36254998 36255290 -65125231 - AluSq SINE Alu -20 293 1 209 358 180 33 chr15 36255320 36255348 -65125173 + L2 LINE L2 2329 2352 -962 2280 109 0 10 chr15 36255348 36255652 -65124869 - AluSq SINE Alu -12 301 1 209 358 180 33 chr15 36255652 36256078 -65124443 + L2 LINE L2 2352 2850 -464 1555 158 39 11 chr15 36256180 36256465 -65124056 - AluSx SINE Alu -9 293 1 267 234 188 0 chr15 36257145 36257209 -65123312 - MER5C DNA MER1_type -248 76 1 342 179 0 0 chr15 36257373 36257429 -65123092 - MER66B LTR ERV1 -136 350 295 321 26 0 0 chr15 36257607 36257645 -65122876 + (A)n Simple_repeat Simple_repeat 1 38 0 180 0 0 0 chr15 36258151 36258171 -65122350 + (TAA)n Simple_repeat Simple_repeat 2 21 0 896 106 25 38 chr15 36258292 36258452 -65122069 + L1MA4 LINE L1 6143 6300 0 187 158 0 53 chr15 36258900 36258938 -65121583 - MER5C DNA MER1_type -285 39 4 198 0 0 0 chr15 36258988 36259010 -65121511 + (TA)n Simple_repeat Simple_repeat 2 23 0 1844 166 0 7 chr15 36259035 36259336 -65121185 - AluJo SINE Alu -13 299 1 294 109 0 55 chr15 36259446 36259501 -65121020 - L1ME LINE L1 -664 5498 5447 1956 116 0 64 chr15 36262882 36263225 -65117296 - AluSx SINE Alu 0 312 1 310 242 198 0 chr15 36263236 36263327 -65117194 - L2 LINE L2 -9 3304 3196 2091 127 0 0 chr15 36263339 36263630 -65116891 - AluSx SINE Alu -17 295 5 2166 136 0 0 chr15 36263640 36263949 -65116572 - AluSx SINE Alu -3 309 1 2407 87 0 0 chr15 36263987 36264285 -65116236 + AluY SINE Alu 1 298 -13 22 0 0 0 chr15 36265253 36265275 -65115246 + AT_rich Low_complexity Low_complexity 1 22 0 900 200 6 0 chr15 36265375 36265540 -65114981 + FRAM SINE Alu 1 163 -13 842 177 26 31 chr15 36266117 36266309 -65114212 - AluSg SINE Alu -118 192 2 1311 210 4 7 chr15 36266528 36266809 -65113712 - AluSg SINE Alu -30 280 1 693 233 0 0 chr15 36267054 36267174 -65113347 + FLAM_A SINE Alu 2 121 -12 3127 135 8 38 chr15 36267481 36267846 -65112675 + MER1A DNA MER1_type 49 397 -2305 1908 153 13 7 chr15 36267846 36268154 -65112367 + AluSx SINE Alu 1 310 -2 3127 135 8 38 chr15 36268154 36268284 -65112237 + MER1A DNA MER1_type 397 529 0 475 311 129 14 chr15 36268321 36268490 -65112031 + L1M4 LINE L1 2872 3020 -3126 983 143 0 0 chr15 36268490 36268623 -65111898 - FLAM_C SINE Alu 0 133 1 475 311 129 14 chr15 36268623 36268735 -65111786 + L1M4 LINE L1 3020 3118 -3028 1827 177 3 3 chr15 36268735 36269040 -65111481 + AluJo SINE Alu 1 305 -7 475 311 129 14 chr15 36269040 36269107 -65111414 + L1M4 LINE L1 3118 3261 -2885 703 191 0 0 chr15 36269113 36269223 -65111298 + FLAM_A SINE Alu 1 110 -32 1459 204 21 0 chr15 36269339 36269628 -65110893 + AluJb SINE Alu 5 299 -13 602 138 52 0 chr15 36269629 36269745 -65110776 + L1M4 LINE L1 5195 5316 -830 845 153 0 22 chr15 36269747 36269884 -65110637 + FLAM_C SINE Alu 1 134 -9 289 159 0 43 chr15 36269909 36269978 -65110543 + L1M LINE L1 5293 5358 -826 3385 123 34 24 chr15 36269978 36270056 -65110465 + Tigger3b DNA MER2_type 1 77 -2951 1946 127 63 0 chr15 36270056 36270340 -65110181 + AluSx SINE Alu 1 302 -10 3385 123 34 24 chr15 36270340 36270551 -65109970 + Tigger3b DNA MER2_type 77 285 -2743 1572 193 30 3 chr15 36270551 36270847 -65109674 - AluJo SINE Alu -8 304 1 3385 123 34 24 chr15 36270847 36271091 -65109430 + Tigger3b DNA MER2_type 285 540 -691 2104 117 7 7 chr15 36271092 36271412 -65109109 - AluSq SINE Alu 0 313 3 425 167 11 22 chr15 36271415 36271505 -65109016 + L1MB8 LINE L1 6090 6178 0 1066 141 32 27 chr15 36272069 36272289 -65108232 - AluY SINE Alu -22 289 69 560 130 22 11 chr15 36272398 36272490 -65108031 - AluS SINE Alu -220 93 1 926 201 136 125 chr15 36272799 36272904 -65107617 - L1MC5 LINE L1 -37 7924 7822 1796 145 3 11 chr15 36272904 36273187 -65107334 + AluJb SINE Alu 6 286 -26 926 201 136 125 chr15 36273187 36273831 -65106690 - L1MC5 LINE L1 -139 7822 7167 830 170 7 7 chr15 36273838 36273973 -65106548 + Tigger4(Zombi) DNA MER2_type 1 135 -2596 1749 125 29 4 chr15 36273977 36274249 -65106272 + Tigger4(Zombi) DNA MER2_type 2415 2693 -38 898 161 47 5 chr15 36274249 36274441 -65106080 + AluSx SINE Alu 1 200 -112 516 192 192 16 chr15 36274641 36274766 -65105755 - AluJo SINE Alu -163 149 3 2174 108 3 3 chr15 36274774 36275079 -65105442 - AluSx SINE Alu -1 311 7 2002 102 65 0 chr15 36275092 36275385 -65105136 - AluSp SINE Alu -1 312 1 1477 164 23 59 chr15 36275465 36275596 -65104925 + AluJb SINE Alu 1 135 -177 2282 104 3 0 chr15 36275596 36275903 -65104618 + AluSq SINE Alu 1 308 -5 1477 164 23 59 chr15 36275903 36276075 -65104446 + AluJb SINE Alu 135 293 -19 1285 185 9 0 chr15 36276085 36276301 -65104220 + AluJo SINE Alu 1 218 -94 696 353 12 8 chr15 36276378 36276619 -65103902 - AluSg/x SINE Alu -1 311 70 2216 99 20 0 chr15 36277322 36277614 -65102907 - AluSx SINE Alu -14 298 1 384 232 169 2 chr15 36278366 36278508 -65102013 + MIR SINE MIR 2 162 -62 1800 134 131 6 chr15 36278676 36278996 -65101525 + MER46B DNA MER2_type 1 235 -1 2065 84 0 0 chr15 36279339 36279600 -65100921 + AluY SINE Alu 1 261 -50 413 235 10 31 chr15 36279771 36279869 -65100652 + AluY SINE Alu 202 297 -14 495 206 19 9 chr15 36279916 36280023 -65100498 - L2 LINE L2 0 3313 3206 207 69 0 0 chr15 36280063 36280092 -65100429 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2167 101 0 0 chr15 36280095 36280373 -65100148 - AluSx SINE Alu -29 283 6 1827 118 80 3 chr15 36280627 36280914 -65099607 - AluY SINE Alu -2 309 1 1261 96 0 45 chr15 36280937 36281114 -65099407 + AluSc SINE Alu 123 291 -18 3264 203 28 76 chr15 36281402 36282420 -65098101 - LTR5 LTR ERVK 0 969 1 47 44 0 0 chr15 36283856 36283924 -65096597 + AT_rich Low_complexity Low_complexity 1 68 0 25 31 0 0 chr15 36283946 36283978 -65096543 + AT_rich Low_complexity Low_complexity 1 32 0 2530 66 0 0 chr15 36284026 36284329 -65096192 + AluY SINE Alu 1 303 -8 2208 79 4 0 chr15 36284655 36284932 -65095589 + AluSx SINE Alu 13 290 -22 180 0 0 0 chr15 36284940 36284960 -65095561 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 456 320 127 14 chr15 36285126 36285473 -65095048 + L2 LINE L2 1867 2252 -1062 251 318 32 71 chr15 36285462 36285588 -65094933 - L2 LINE L2 -8 3264 3144 * 1103 178 5 0 chr15 36285686 36285871 -65094650 + AluJo SINE Alu 86 271 -41 24 0 0 0 chr15 36285873 36285897 -65094624 + AT_rich Low_complexity Low_complexity 1 24 0 184 262 57 71 chr15 36286114 36286255 -65094266 + L2 LINE L2 2622 2760 -554 583 145 0 174 chr15 36286277 36286559 -65093962 - AluSp SINE Alu -7 306 74 2305 87 3 26 chr15 36286731 36287043 -65093478 - AluSp SINE Alu -8 305 1 2102 120 3 0 chr15 36287213 36287497 -65093024 - AluSx SINE Alu -24 288 4 21 0 0 0 chr15 36287505 36287526 -65092995 + AT_rich Low_complexity Low_complexity 1 21 0 1004 140 7 0 chr15 36287528 36287671 -65092850 - FRAM SINE Alu -30 146 3 329 388 25 6 chr15 36287799 36287959 -65092562 + L2 LINE L2 3106 3268 -4 220 256 11 100 chr15 36287997 36288087 -65092434 + L2 LINE L2 1371 1452 -1862 201 74 0 0 chr15 36290408 36290435 -65090086 + (T)n Simple_repeat Simple_repeat 1 27 0 273 188 16 188 chr15 36290435 36290448 -65090073 - HAL1 LINE L1 -1677 830 816 1883 125 20 14 chr15 36290448 36290744 -65089777 + AluSx SINE Alu 6 303 -9 273 188 16 188 chr15 36290744 36290922 -65089599 - HAL1 LINE L1 -1691 816 672 320 331 184 49 chr15 36290988 36291130 -65089391 + L2 LINE L2 2372 2493 -821 1872 131 14 14 chr15 36291130 36291453 -65089068 - AluSx SINE Alu 0 312 1 320 331 184 49 chr15 36291453 36291844 -65088677 + L2 LINE L2 2493 2977 -337 219 133 0 0 chr15 36292093 36292138 -65088383 + (A)n Simple_repeat Simple_repeat 1 45 0 24 91 0 0 chr15 36292152 36292218 -65088303 + AT_rich Low_complexity Low_complexity 1 66 0 271 409 31 8 chr15 36292383 36292510 -65088011 + L2 LINE L2 3123 3252 -20 2225 100 0 0 chr15 36292955 36293244 -65087277 + AluY SINE Alu 1 289 -22 2024 143 3 0 chr15 36293383 36293676 -65086845 + AluSx SINE Alu 1 294 -18 2272 109 3 10 chr15 36293679 36293991 -65086530 + AluSg SINE Alu 1 310 0 2102 124 3 3 chr15 36294001 36294291 -65086230 + AluSg SINE Alu 2 291 -19 2011 141 0 3 chr15 36294453 36294759 -65085762 + AluSx SINE Alu 3 307 -5 213 351 104 15 chr15 36294863 36294997 -65085524 + L2 LINE L2 1317 1462 -1852 2244 157 72 2 chr15 36295326 36295727 -65084794 - MLT1C LTR MaLR 0 467 39 377 75 0 0 chr15 36295843 36295896 -65084625 + Alu SINE Alu 248 300 -1 2259 61 43 0 chr15 36296112 36296392 -65084129 - AluY SINE Alu -18 293 2 1972 117 0 18 chr15 36296656 36296937 -65083584 - AluSg SINE Alu -34 276 1 812 138 0 0 chr15 36296946 36297055 -65083466 - AluSq/x SINE Alu -202 110 2 601 206 19 0 chr15 36297178 36297285 -65083236 - AluSg/x SINE Alu -21 291 183 258 330 34 17 chr15 36297388 36297507 -65083014 + CT-rich Low_complexity Low_complexity 1 121 0 2211 71 7 14 chr15 36298047 36298342 -65082179 + AluSx SINE Alu 1 293 -19 1895 172 0 0 chr15 36298970 36299273 -65081248 + AluJb SINE Alu 1 303 -9 2433 74 7 0 chr15 36299350 36299648 -65080873 - AluY SINE Alu -10 301 2 22 35 0 0 chr15 36300050 36300079 -65080442 + AT_rich Low_complexity Low_complexity 1 29 0 339 210 12 25 chr15 36300751 36300832 -65079689 + FLAM SINE Alu 44 123 -10 1718 163 10 17 chr15 36300844 36301145 -65079376 + AluSp SINE Alu 1 299 -14 851 164 0 0 chr15 36301145 36301273 -65079248 - AluJo/FLAM SINE Alu -172 130 3 2063 134 3 3 chr15 36301320 36301625 -65078896 - AluSx SINE Alu -7 305 1 192 152 0 0 chr15 36301659 36301692 -65078829 + T-rich Low_complexity Low_complexity 2 34 0 447 169 0 0 chr15 36301693 36301758 -65078763 - AluS SINE Alu -247 66 2 246 32 0 0 chr15 36301813 36301844 -65078677 + (T)n Simple_repeat Simple_repeat 1 31 0 852 188 0 0 chr15 36301860 36301993 -65078528 - FLAM_C SINE Alu 0 133 1 1754 165 34 3 chr15 36302191 36302482 -65078039 - AluJb SINE Alu -12 300 1 237 247 65 11 chr15 36302696 36302789 -65077732 - AluJb SINE Alu -178 124 27 1799 86 0 0 chr15 36303054 36303287 -65077234 + AluSg/x SINE Alu 66 298 -14 1800 81 4 0 chr15 36303489 36303725 -65076796 + AluSg SINE Alu 1 237 -73 2090 127 93 51 chr15 36304039 36304221 -65076300 + MSTC LTR MaLR 1 174 -254 1972 136 0 3 chr15 36304221 36304516 -65076005 + AluSx SINE Alu 1 294 -18 1566 183 6 25 chr15 36304525 36304842 -65075679 + AluJb SINE Alu 1 311 -1 2090 127 93 51 chr15 36304842 36305058 -65075463 + MSTC LTR MaLR 181 426 -2 349 119 17 47 chr15 36305118 36305351 -65075170 - L1MA7 LINE L1 -149 6142 5904 2125 106 0 3 chr15 36305351 36305644 -65074877 - AluSc SINE Alu -17 292 1 349 119 17 47 chr15 36305644 36305992 -65074529 - L1MA7 LINE L1 -387 5904 5609 2217 110 0 0 chr15 36305992 36306301 -65074220 - AluSc SINE Alu 0 309 1 349 119 17 47 chr15 36306301 36306646 -65073875 - L1MA7 LINE L1 -682 5609 5255 1521 175 14 11 chr15 36306655 36306935 -65073586 - AluY SINE Alu -18 283 3 403 351 111 51 chr15 36306936 36307417 -65073104 + L1M2 LINE L1 1647 2079 -4770 1430 125 0 13 chr15 36307519 36307743 -65072778 - AluSc SINE Alu -88 221 1 5298 179 149 140 chr15 36307743 36308473 -65072048 - L1 LINE L1 -876 6689 5967 2265 84 3 3 chr15 36308473 36308772 -65071749 - AluY SINE Alu -12 299 1 5298 179 149 140 chr15 36308772 36308930 -65071591 - L1 LINE L1 -1598 5967 5812 2157 111 0 7 chr15 36308930 36309237 -65071284 + AluSg SINE Alu 1 305 -5 1108 125 0 0 chr15 36309243 36309403 -65071118 + AluSg/x SINE Alu 138 297 -13 5298 179 149 140 chr15 36309403 36309702 -65070819 - L1 LINE L1 -1757 5808 5513 332 221 0 29 chr15 36309702 36309770 -65070751 + AluS SINE Alu 1 66 -237 1269 121 0 0 chr15 36309770 36309944 -65070577 - AluSx SINE Alu -137 175 2 5298 179 149 140 chr15 36309944 36310324 -65070197 - L1 LINE L1 -2052 5513 5138 2310 89 0 6 chr15 36310324 36310637 -65069884 - AluY SINE Alu 0 311 1 5298 179 149 140 chr15 36310637 36310825 -65069696 - L1 LINE L1 -2427 5138 4953 2071 105 24 0 chr15 36310825 36311119 -65069402 - AluSx SINE Alu -9 303 3 5298 179 149 140 chr15 36311119 36312406 -65068115 - L1 LINE L1 -2612 4953 3678 2167 116 0 0 chr15 36312406 36312708 -65067813 + AluSg1 SINE Alu 1 302 -7 5298 179 149 140 chr15 36312708 36312754 -65067767 - L1 LINE L1 -3887 3678 3634 1540 154 7 4 chr15 36312754 36313026 -65067495 - AluSq SINE Alu -38 275 3 5298 179 149 140 chr15 36313026 36313096 -65067425 - L1 LINE L1 -3931 3634 3087 589 105 0 0 chr15 36313080 36313166 -65067355 - L1 LINE L1 -3783 2363 2278 * 5741 116 48 46 chr15 36313178 36314562 -65065959 - pTR5 LTR ERV1 -143 2295 743 2970 137 146 76 chr15 36314610 36314678 -65065843 - L1 LINE L1 -4463 3102 3040 2127 111 20 0 chr15 36314678 36314984 -65065537 - AluSx SINE Alu 0 312 1 2970 137 146 76 chr15 36314984 36315461 -65065060 - L1 LINE L1 -4525 3040 2598 623 414 29 83 chr15 36315461 36315773 -65064748 - AluY SINE Alu -6 295 1 2970 137 146 76 chr15 36315773 36316416 -65064105 - L1 LINE L1 -4967 2598 2001 2357 71 0 0 chr15 36316416 36316713 -65063808 - AluY SINE Alu -14 297 1 2970 137 146 76 chr15 36316713 36316729 -65063792 - L1 LINE L1 -5564 2001 1988 2118 113 3 7 chr15 36316729 36317039 -65063482 - AluSx SINE Alu -3 309 1 2970 137 146 76 chr15 36317039 36317202 -65063319 - L1 LINE L1 -5577 1988 1411 2402 177 132 12 chr15 36317186 36317695 -65062826 - L1 LINE L1 -6987 578 9 * 3892 123 38 0 chr15 36317687 36318312 -65062209 - L1M1 LINE L1 -4499 3066 2418 2236 100 3 3 chr15 36318313 36318778 -65061743 - AluSp SINE Alu 0 467 3 1815 156 10 0 chr15 36318780 36319075 -65061446 - AluSx SINE Alu -14 298 1 304 112 0 12 chr15 36319130 36319187 -65061334 + AluSp SINE Alu 120 170 -133 1765 98 17 0 chr15 36319187 36319423 -65061098 + HERVK11 LTR ERVK 6528 6767 -1186 1138 199 17 21 chr15 36319408 36319649 -65060872 + HERVK11 LTR ERVK 6957 7196 -757 * 223 272 40 24 chr15 36319759 36319884 -65060637 + G-rich Low_complexity Low_complexity 4 130 0 871 122 0 8 chr15 36320190 36320321 -65060200 - AluSq/x SINE Alu -182 130 1 12136 143 34 8 chr15 36320321 36320409 -65060112 - L1M1 LINE L1 -5133 2432 2348 9029 26 5 234 chr15 36320409 36322193 -65058328 + SVA Other Other 7 1381 -5 12136 143 34 8 chr15 36322193 36323974 -65056547 - L1M1 LINE L1 -5217 2348 514 6434 103 8 19 chr15 36324012 36324984 -65055537 - MER11C LTR ERVK -14 1057 4 7697 56 0 1 chr15 36324986 36325910 -65054611 - HERVK11 LTR ERVK 0 7953 7031 898 104 0 15 chr15 36326202 36326336 -65054185 - FLAM_C SINE Alu -5 138 7 1801 126 18 3 chr15 36326528 36326813 -65053708 - AluSx SINE Alu -23 289 1 455 212 0 10 chr15 36327364 36327463 -65053058 - AluJb SINE Alu -91 221 124 2000 109 7 14 chr15 36328344 36328637 -65051884 - AluSx SINE Alu -21 291 1 231 114 0 0 chr15 36328686 36328721 -65051800 + (T)n Simple_repeat Simple_repeat 1 35 0 730 122 9 0 chr15 36328729 36328836 -65051685 - AluSg/x SINE Alu -4 308 201 2176 101 10 0 chr15 36329206 36329513 -65051008 - AluSp SINE Alu -3 310 1 699 218 0 0 chr15 36329523 36329656 -65050865 - FLAM_C SINE Alu 0 133 1 279 286 0 0 chr15 36330790 36330853 -65049668 - MER2 DNA MER2_type 0 345 283 791 139 0 0 chr15 36330875 36330990 -65049531 - MER2 DNA MER2_type -210 135 21 2790 46 32 0 chr15 36331204 36331601 -65048920 - MER11B LTR ERVK -733 503 1 8275 57 4 1 chr15 36331601 36332595 -65047926 - HERVK11 LTR ERVK 0 7953 6957 1759 98 17 0 chr15 36332580 36332816 -65047705 - HERVK11 LTR ERVK -1186 6767 6528 * 304 112 0 12 chr15 36332816 36332873 -65047648 - AluSp SINE Alu -133 170 120 1862 166 0 0 chr15 36332928 36333236 -65047285 + AluSq SINE Alu 1 308 -5 2676 185 43 2 chr15 36333289 36333776 -65046745 + L1M1 LINE L1 14 520 -7045 1824 38 0 0 chr15 36333794 36334005 -65046516 + HERVK11 LTR ERVK 6320 6530 -1423 * 5261 48 5 2 chr15 36334001 36334640 -65045881 - HERVK11 LTR ERVK -1617 6336 5696 407 83 17 0 chr15 36334640 36334700 -65045821 - L1MA7 LINE L1 -97 6194 6134 316 215 0 15 chr15 36334989 36335054 -65045467 + L1MC4 LINE L1 6640 6703 -1339 1478 175 0 89 chr15 36335066 36335263 -65045258 - AluJo SINE Alu -11 301 143 2174 85 13 3 chr15 36335263 36335568 -65044953 + AluSc SINE Alu 1 308 -1 1478 175 0 89 chr15 36335568 36335696 -65044825 - AluJo SINE Alu -169 143 5 26 30 0 0 chr15 36335919 36335952 -65044569 + AT_rich Low_complexity Low_complexity 1 33 0 1932 98 88 0 chr15 36336075 36336360 -65044161 - AluSx SINE Alu -1 311 2 1679 149 59 43 chr15 36336764 36337086 -65043435 + MER1B DNA MER1_type 1 327 -12 224 320 93 10 chr15 36337097 36337194 -65043327 + L2 LINE L2 2580 2684 -630 710 169 25 0 chr15 36337273 36337391 -65043130 + AluJo/FLAM SINE Alu 9 129 -183 2016 96 3 7 chr15 36337394 36337717 -65042804 + AluSx SINE Alu 1 322 0 2254 75 3 0 chr15 36337811 36338104 -65042417 - AluSg1 SINE Alu -15 294 1 1739 123 3 21 chr15 36338136 36338421 -65042100 - AluJo SINE Alu -26 286 7 1804 126 18 3 chr15 36338613 36338898 -65041623 - AluSx SINE Alu -23 289 1 544 165 0 0 chr15 36339442 36339539 -65040982 - FLAM_A SINE Alu -45 97 1 2212 68 0 10 chr15 36340434 36340728 -65039793 - AluSx SINE Alu -21 291 1 192 40 0 0 chr15 36340730 36340755 -65039766 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 444 260 81 73 chr15 36340755 36340843 -65039678 - L1ME3A LINE L1 -3 6167 6081 1453 157 26 4 chr15 36340843 36341111 -65039410 + AluJb SINE Alu 1 274 -38 444 260 81 73 chr15 36341111 36341268 -65039253 - L1ME3A LINE L1 -89 6081 5920 812 208 92 48 chr15 36341272 36341625 -65038896 - L1ME3A LINE L1 -621 5543 5207 242 29 29 0 chr15 36341625 36341660 -65038861 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2151 83 3 14 chr15 36341664 36341952 -65038569 - AluSp SINE Alu -26 287 3 812 208 92 48 chr15 36341952 36342061 -65038460 - L1ME3A LINE L1 -959 5205 5060 2103 115 18 96 chr15 36342073 36342121 -65038400 - L1MA6 LINE L1 -1 6299 6249 2096 54 96 4 chr15 36342121 36342401 -65038120 - AluY SINE Alu -5 306 1 2103 115 18 96 chr15 36342401 36342734 -65037787 - L1MA6 LINE L1 -51 6249 5954 2085 109 3 0 chr15 36342734 36343036 -65037485 - AluSc SINE Alu -6 303 1 2103 115 18 96 chr15 36343036 36343089 -65037432 - L1MA6 LINE L1 -346 5954 5898 207 0 0 0 chr15 36343688 36343711 -65036810 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2187 82 4 0 chr15 36343713 36343993 -65036528 - AluSp SINE Alu -32 281 1 699 218 0 0 chr15 36344003 36344136 -65036385 - FLAM_C SINE Alu 0 133 1 279 286 0 0 chr15 36345270 36345333 -65035188 - MER2 DNA MER2_type 0 345 283 791 139 0 0 chr15 36345355 36345470 -65035051 - MER2 DNA MER2_type -210 135 21 1273 154 187 19 chr15 36345885 36346180 -65034341 - AluSx SINE Alu 0 340 1 2286 96 0 0 chr15 36346327 36346628 -65033893 - AluSc SINE Alu -4 305 5 1840 147 0 16 chr15 36347058 36347364 -65033157 - AluSx SINE Alu -7 305 5 843 153 45 80 chr15 36347367 36347543 -65032978 - FRAM SINE Alu -13 163 1 301 365 44 25 chr15 36347651 36347810 -65032711 + L2 LINE L2 3106 3267 -5 700 125 0 0 chr15 36347829 36347925 -65032596 - AluS SINE Alu -216 97 2 1809 247 78 6 chr15 36348014 36348453 -65032068 - L1M4 LINE L1 -2629 3517 3111 1413 173 6 77 chr15 36348453 36348619 -65031902 - AluJo SINE Alu -11 301 125 207 0 0 0 chr15 36348619 36348642 -65031879 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1931 92 33 0 chr15 36348642 36348914 -65031607 - AluSg SINE Alu -29 281 1 1988 125 3 0 chr15 36348914 36349209 -65031312 - AluSg SINE Alu -14 296 1 1413 173 6 77 chr15 36349209 36349221 -65031300 - AluJo SINE Alu -185 127 116 2158 114 0 0 chr15 36349221 36349518 -65031003 - AluSg SINE Alu -13 297 1 1413 173 6 77 chr15 36349518 36349660 -65030861 - AluJo SINE Alu -196 116 1 1809 247 78 6 chr15 36349660 36349844 -65030677 - L1M4 LINE L1 -3035 3111 2849 2225 63 0 7 chr15 36350147 36350456 -65030065 - AluY SINE Alu 0 307 1 1691 134 33 43 chr15 36350965 36351270 -65029251 + AluSp SINE Alu 1 302 -11 1359 171 24 44 chr15 36351547 36351845 -65028676 - AluJo SINE Alu -20 292 1 2205 116 0 0 chr15 36351854 36352155 -65028366 - AluSx SINE Alu -11 301 1 239 338 0 0 chr15 36352157 36352228 -65028293 + L1MD2 LINE L1 6201 6271 -88 1932 147 0 0 chr15 36352265 36352564 -65027957 - AluSg SINE Alu -11 299 1 1456 110 5 0 chr15 36352564 36352772 -65027749 - AluSg/x SINE Alu -8 302 93 2068 105 14 0 chr15 36352780 36353076 -65027445 - AluSx SINE Alu -12 300 1 232 36 0 0 chr15 36353121 36353149 -65027372 + (TTTG)n Simple_repeat Simple_repeat 2 92 0 1631 158 37 0 chr15 36353149 36353422 -65027099 - AluJb SINE Alu -1 310 1 248 260 0 0 chr15 36353923 36353996 -65026525 - AluJ/FRAM SINE Alu 0 302 230 1600 101 4 8 chr15 36354490 36354728 -65025793 - AluSp SINE Alu -76 237 1 576 131 0 0 chr15 36354993 36355077 -65025444 - AluJ/FLAM SINE Alu -227 85 2 406 323 139 20 chr15 36355084 36355285 -65025236 + L2 LINE L2 1007 1231 -2083 621 90 0 0 chr15 36355287 36355365 -65025156 + AluSx SINE Alu 2 79 -233 2613 48 0 0 chr15 36355366 36355676 -65024845 + AluY SINE Alu 1 310 -1 1791 100 0 0 chr15 36355692 36355933 -65024588 + AluSx SINE Alu 66 306 -4 456 326 102 31 chr15 36355947 36356365 -65024156 + L2 LINE L2 1218 1724 -1590 220 267 158 0 chr15 36356406 36356507 -65024014 - MIR SINE MIR -128 134 18 793 153 0 69 chr15 36356524 36356668 -65023853 + FLAM_C SINE Alu 7 140 -3 681 206 8 8 chr15 36356667 36356798 -65023723 + AluJb SINE Alu 118 248 -64 * 268 270 95 0 chr15 36356798 36356872 -65023649 + L2 LINE L2 3232 3312 -1 1739 157 10 13 chr15 36357200 36357499 -65023022 + AluJo SINE Alu 3 300 -12 2264 96 0 10 chr15 36358273 36358587 -65021934 - AluSx SINE Alu -1 311 1 1998 119 23 3 chr15 36358645 36358948 -65021573 - AluSx SINE Alu -3 309 1 2324 77 0 0 chr15 36359013 36359311 -65021210 - AluY SINE Alu -13 298 1 756 189 0 0 chr15 36359400 36359532 -65020989 - FLAM_A SINE Alu 0 133 2 801 153 0 23 chr15 36360298 36360429 -65020092 + FLAM_C SINE Alu 2 129 -14 2186 107 0 0 chr15 36360484 36360784 -65019737 + AluSg1 SINE Alu 4 303 -6 402 223 64 0 chr15 36361545 36361639 -65018882 - MIR SINE MIR -40 222 123 1833 110 70 0 chr15 36361780 36362053 -65018468 - AluSx SINE Alu -20 292 1 2380 75 0 7 chr15 36362060 36362367 -65018154 - AluY SINE Alu -6 305 1 2041 107 20 3 chr15 36362466 36362765 -65017756 + AluSp SINE Alu 1 304 -9 1676 161 31 0 chr15 36363355 36363641 -65016880 + AluJb SINE Alu 1 295 -17 2022 131 13 0 chr15 36363641 36363947 -65016574 + AluSx SINE Alu 1 310 -2 2172 105 0 7 chr15 36364460 36364764 -65015757 - AluSx SINE Alu -10 302 1 1182 200 89 32 chr15 36364780 36364956 -65015565 + L1MB7 LINE L1 2182 2347 -3799 2373 67 0 0 chr15 36364956 36365253 -65015268 + AluY SINE Alu 1 297 -14 1182 200 89 32 chr15 36365253 36365446 -65015075 + L1MB7 LINE L1 2347 2572 -3574 3320 206 52 67 chr15 36365501 36365548 -65014973 + L1MB7 LINE L1 3998 4044 -2102 1466 108 125 4 chr15 36365548 36365788 -65014733 - AluSx SINE Alu -43 269 1 3320 206 52 67 chr15 36365788 36366305 -65014216 + L1MB7 LINE L1 4044 4567 -1579 1974 128 0 3 chr15 36366305 36366595 -65013926 + AluSx SINE Alu 1 289 -23 3320 206 52 67 chr15 36366595 36366921 -65013600 + L1MB7 LINE L1 4567 4875 -1271 672 175 0 32 chr15 36366921 36367047 -65013474 - FLAM_C SINE Alu -10 123 2 3320 206 52 67 chr15 36367047 36367177 -65013344 + L1MB7 LINE L1 4875 5005 -1141 2692 133 64 92 chr15 36367166 36367535 -65012986 + L1MB3 LINE L1 5568 5915 -268 * 2127 118 0 3 chr15 36367535 36367848 -65012673 + AluSq SINE Alu 1 312 -1 2692 133 64 92 chr15 36367848 36368101 -65012420 + L1MB3 LINE L1 5915 6173 -10 3883 183 51 13 chr15 36368113 36369240 -65011281 + L1MB7 LINE L1 4997 6171 -13 210 264 123 28 chr15 36369795 36369901 -65010620 + L2 LINE L2 3188 3303 -10 844 158 67 0 chr15 36369908 36370073 -65010448 - AluJo/FRAM SINE Alu -8 304 129 1457 118 25 112 chr15 36370076 36370285 -65010236 - AluYb8 SINE Alu -3 315 142 2741 19 0 6 chr15 36370285 36370604 -65009917 - AluYb8 SINE Alu -1 317 1 1457 118 25 112 chr15 36370604 36370717 -65009804 - AluYb8 SINE Alu -176 142 21 21 36 0 0 chr15 36370800 36370828 -65009693 + AT_rich Low_complexity Low_complexity 1 28 0 753 159 41 108 chr15 36370964 36371112 -65009409 + MER5A DNA MER1_type 5 138 -51 2142 99 10 0 chr15 36371112 36371416 -65009105 + AluSx SINE Alu 1 307 -5 753 159 41 108 chr15 36371416 36371462 -65009059 + MER5A DNA MER1_type 138 186 -3 390 278 35 56 chr15 36371540 36371994 -65008527 - MER5A DNA MER1_type -6 183 43 2000 109 0 32 chr15 36371648 36371959 -65008562 - AluSq SINE Alu -12 301 1 244 296 40 59 chr15 36371959 36372021 -65008500 + MER5A DNA MER1_type 126 188 -1 2447 44 3 3 chr15 36372038 36372335 -65008186 + AluY SINE Alu 1 297 -14 856 98 0 72 chr15 36372515 36372668 -65007853 - FLAM_C SINE Alu -1 142 1 1823 117 3 28 chr15 36372704 36373022 -65007499 - AluSx SINE Alu 0 311 1 1506 124 0 0 chr15 36373255 36373473 -65007048 - AluSq SINE Alu -93 220 3 1744 149 38 3 chr15 36373497 36373786 -65006735 + AluSg SINE Alu 1 299 -11 2313 59 7 10 chr15 36374406 36374713 -65005808 + AluY SINE Alu 1 306 -5 1444 176 28 11 chr15 36375543 36375827 -65004694 + AluJo SINE Alu 1 289 -23 1234 87 5 5 chr15 36375827 36376012 -65004509 - AluY SINE Alu -2 309 125 1173 67 0 7 chr15 36376137 36376286 -65004235 - AluY SINE Alu -163 148 1 1574 200 3 14 chr15 36377262 36377557 -65002964 + AluJb SINE Alu 1 292 -10 2125 116 3 0 chr15 36377826 36378129 -65002392 - AluSq SINE Alu -3 310 7 1710 132 26 0 chr15 36378168 36378434 -65002087 - AluSx SINE Alu -24 288 16 1903 73 16 0 chr15 36378434 36378704 -65001817 + AluSp SINE Alu 33 308 0 1485 167 17 31 chr15 36378713 36379007 -65001514 + AluJb SINE Alu 1 290 -22 1934 114 3 57 chr15 36379235 36379369 -65001152 + AluSx SINE Alu 1 141 -171 2089 96 3 14 chr15 36379369 36379661 -65000860 + AluSp SINE Alu 1 289 -24 1934 114 3 57 chr15 36379661 36379841 -65000680 + AluSx SINE Alu 141 298 -14 2094 104 7 10 chr15 36380434 36380731 -64999790 + AluSx SINE Alu 1 296 -16 1751 144 0 49 chr15 36380805 36381111 -64999410 - AluSq SINE Alu -22 291 1 1737 101 8 0 chr15 36382316 36382563 -64997958 - AluSp SINE Alu -11 302 54 257 278 157 19 chr15 36382852 36382960 -64997561 - MER5A DNA MER1_type -30 159 37 2116 102 20 3 chr15 36383569 36383862 -64996659 + AluSx SINE Alu 1 298 -14 1192 98 0 49 chr15 36385819 36386003 -64994518 + AluSq SINE Alu 1 175 -138 1132 101 13 0 chr15 36386107 36386265 -64994256 + AluSg/x SINE Alu 127 286 -24 1735 147 28 0 chr15 36386419 36386704 -64993817 + AluSx SINE Alu 1 293 -19 704 175 40 0 chr15 36386845 36386971 -64993550 + AluJo SINE Alu 5 135 -177 2179 98 10 3 chr15 36387236 36387542 -64992979 - AluSx SINE Alu -4 308 1 1456 136 87 45 chr15 36387636 36387923 -64992598 - AluJo SINE Alu -13 299 1 1892 146 7 0 chr15 36388754 36389049 -64991472 + AluSx SINE Alu 1 297 -15 205 244 0 0 chr15 36390532 36390573 -64989948 + GA-rich Low_complexity Low_complexity 4 44 0 785 128 0 0 chr15 36391020 36391137 -64989384 - AluSx SINE Alu -4 306 190 999 105 0 14 chr15 36391137 36391280 -64989241 - AluSx SINE Alu -171 142 2 2343 56 0 10 chr15 36391849 36392154 -64988367 + AluY SINE Alu 1 302 -9 185 232 14 87 chr15 36393590 36393659 -64986862 - L2 LINE L2 -205 3067 3004 2104 113 0 0 chr15 36394220 36394512 -64986009 - AluSx SINE Alu -16 296 5 1940 132 3 0 chr15 36394524 36394819 -64985702 - AluSx SINE Alu -16 296 1 1536 171 14 11 chr15 36394850 36395156 -64985365 + AluJo SINE Alu 1 307 0 532 164 23 4 chr15 36395592 36395690 -64984831 + Tigger3(Golem) DNA MER2_type 15 111 -2918 1293 148 117 34 chr15 36395690 36395827 -64984694 - AluJo SINE Alu -18 294 170 2005 93 0 0 chr15 36395827 36396096 -64984425 - AluSx SINE Alu -3 309 41 1293 148 117 34 chr15 36396096 36396222 -64984299 - AluJo SINE Alu -142 170 9 2122 81 54 3 chr15 36398864 36399159 -64981362 + AluSg SINE Alu 1 310 0 270 320 92 65 chr15 36399330 36399483 -64981038 + MIR3 SINE MIR 21 177 -31 2290 53 3 56 chr15 36399744 36400064 -64980457 - AluSx SINE Alu -9 303 1 183 80 0 0 chr15 36400432 36400457 -64980064 + (CGGG)n Simple_repeat Simple_repeat 4 28 0 358 98 333 29 chr15 36401083 36401185 -64979336 - FLAM_C SINE Alu 0 133 1 621 181 26 0 chr15 36401429 36401545 -64978976 + AluJb SINE Alu 121 239 -73 1534 118 0 0 chr15 36401556 36401776 -64978745 + AluSg/x SINE Alu 67 286 -26 190 300 33 105 chr15 36401867 36401959 -64978562 + L2 LINE L2 3029 3099 -173 1942 123 0 17 chr15 36401959 36402261 -64978260 - AluSp SINE Alu -16 297 1 190 300 33 105 chr15 36402261 36402378 -64978143 + L2 LINE L2 3099 3223 -49 1207 153 0 5 chr15 36402967 36403163 -64977358 + AluSg SINE Alu 1 195 -115 601 49 0 49 chr15 36403164 36403246 -64977275 + AluSq/x SINE Alu 66 143 -170 1194 188 29 8 chr15 36403246 36403485 -64977036 - AluJo SINE Alu -68 244 1 1668 182 25 0 chr15 36403508 36403794 -64976727 - AluJo SINE Alu -19 293 1 848 180 19 31 chr15 36403794 36403921 -64976600 - AluJo SINE Alu -177 135 11 378 269 78 0 chr15 36403944 36404085 -64976436 - L1ME LINE L1 -408 5762 5611 32 26 0 0 chr15 36404156 36404195 -64976326 + AT_rich Low_complexity Low_complexity 1 39 0 2205 77 3 10 chr15 36404243 36404541 -64975980 + AluY SINE Alu 1 296 -15 1480 148 81 25 chr15 36404550 36404834 -64975687 + AluJo SINE Alu 1 300 -12 1571 161 54 14 chr15 36404916 36405065 -64975456 - AluSx SINE Alu -15 297 155 1892 119 6 41 chr15 36405065 36405384 -64975137 - AluSx SINE Alu -4 308 1 1571 161 54 14 chr15 36405384 36405514 -64975007 - AluSx SINE Alu -157 155 7 660 186 0 0 chr15 36406641 36406754 -64973767 - AluSg/x SINE Alu -3 306 194 2272 88 3 0 chr15 36406784 36407079 -64973442 - AluSx SINE Alu -16 296 1 569 198 0 0 chr15 36407328 36407424 -64973097 - FRAM SINE Alu -76 100 5 506 253 12 12 chr15 36407476 36407638 -64972883 - L1ME LINE L1 -730 5434 5273 2304 57 6 22 chr15 36407649 36407965 -64972556 - AluY SINE Alu 0 311 1 2318 83 3 0 chr15 36408275 36408587 -64971934 + AluSp SINE Alu 1 313 0 23 33 0 0 chr15 36409389 36409419 -64971102 + GC_rich Low_complexity Low_complexity 1 30 0 220 175 125 50 chr15 36410264 36410344 -64970177 + MIR3 SINE MIR 98 183 -25 267 281 83 21 chr15 36410513 36410609 -64969912 + MER5A DNA MER1_type 63 164 -25 1005 189 23 46 chr15 36410621 36410881 -64969640 - L1MB8 LINE L1 -7 6171 5918 949 157 18 12 chr15 36410881 36411047 -64969474 - FRAM SINE Alu -9 167 1 543 134 49 0 chr15 36412230 36412312 -64968209 - AluJb SINE Alu -18 294 209 324 286 118 0 chr15 36412393 36412512 -64968009 + MIR SINE MIR 84 216 -46 22 0 0 0 chr15 36413318 36413340 -64967181 + AT_rich Low_complexity Low_complexity 1 22 0 651 227 86 56 chr15 36417019 36417217 -64963304 - MER3 DNA MER1_type -5 204 1 2240 104 3 0 chr15 36418401 36418708 -64961813 - AluSx SINE Alu -4 308 1 180 176 0 0 chr15 36422715 36422749 -64957772 + T-rich Low_complexity Low_complexity 1 34 0 2293 80 3 0 chr15 36422885 36423184 -64957337 + AluSq SINE Alu 1 300 -13 515 236 0 14 chr15 36423252 36423400 -64957121 + L1MB8 LINE L1 6033 6178 0 968 157 30 30 chr15 36423494 36423660 -64956861 + FRAM SINE Alu 1 166 0 2327 89 0 0 chr15 36423696 36423999 -64956522 - AluSg1 SINE Alu -6 303 1 180 255 76 125 chr15 36424040 36424104 -64956417 + MIR SINE MIR 88 154 -108 1581 151 32 18 chr15 36424104 36424388 -64956133 + AluSx SINE Alu 1 288 -24 180 255 76 125 chr15 36424388 36424507 -64956014 + MIR SINE MIR 154 262 0 520 260 157 2 chr15 36425748 36425980 -64954541 + L1ME LINE L1 5511 5723 -398 2013 107 7 0 chr15 36425981 36426301 -64954220 + AluSx SINE Alu 1 322 0 2038 112 3 19 chr15 36426313 36426625 -64953896 + AluSx SINE Alu 1 307 -5 2001 132 0 0 chr15 36426681 36426969 -64953552 + AluSx SINE Alu 16 303 -9 32 0 0 0 chr15 36427001 36427033 -64953488 + AT_rich Low_complexity Low_complexity 1 32 0 2222 82 0 3 chr15 36427090 36427382 -64953139 + AluY SINE Alu 3 293 -18 1534 194 10 7 chr15 36427391 36427690 -64952831 + AluJo SINE Alu 2 301 -11 991 182 6 0 chr15 36427709 36427890 -64952631 + AluJo SINE Alu 122 303 -9 1887 158 3 0 chr15 36429030 36429328 -64951193 + AluSx SINE Alu 1 299 -13 2079 101 39 0 chr15 36429393 36429679 -64950842 + AluSq SINE Alu 1 297 -16 516 195 34 0 chr15 36429906 36430024 -64950497 - MIR SINE MIR -54 208 87 840 213 85 5 chr15 36430053 36430241 -64950280 + L1MDa LINE L1 353 555 -5985 2031 112 0 7 chr15 36430264 36430594 -64949927 + AluSq SINE Alu 1 313 0 412 347 21 6 chr15 36430791 36430992 -64949529 + MIR SINE MIR 3 205 -57 937 123 0 0 chr15 36431833 36431963 -64948558 + FLAM_C SINE Alu 3 132 -1 316 167 13 90 chr15 36432709 36432787 -64947734 + L2 LINE L2 3238 3309 -4 743 197 8 0 chr15 36433731 36433863 -64946658 + AluJo SINE Alu 2 134 -178 1981 123 10 0 chr15 36433864 36434165 -64946356 + AluY SINE Alu 1 304 -7 1035 185 70 76 chr15 36434623 36434755 -64945766 + AluJo SINE Alu 3 134 -168 2378 50 3 3 chr15 36434755 36435054 -64945467 + AluY SINE Alu 1 299 -12 1035 185 70 76 chr15 36435054 36435223 -64945298 + AluJo SINE Alu 134 302 0 968 66 15 0 chr15 36436137 36436274 -64944247 + AluY SINE Alu 173 311 0 2183 108 0 16 chr15 36436632 36436948 -64943573 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr15 36437364 36437396 -64943125 + AT_rich Low_complexity Low_complexity 1 32 0 893 130 0 0 chr15 36437396 36437519 -64943002 + FLAM_C SINE Alu 1 123 -10 204 40 0 0 chr15 36437523 36437548 -64942973 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1947 109 11 3 chr15 36437586 36437893 -64942628 + AluSx SINE Alu 1 309 0 2271 77 0 0 chr15 36437903 36438212 -64942309 + AluSq SINE Alu 1 309 0 1072 144 0 23 chr15 36438873 36439047 -64941474 + AluJo SINE Alu 1 170 -142 316 310 13 76 chr15 36439111 36439233 -64941288 + MIR3 SINE MIR 46 157 -51 2317 47 20 3 chr15 36439233 36439532 -64940989 - AluY SINE Alu -7 304 1 316 310 13 76 chr15 36439532 36439567 -64940954 + MIR3 SINE MIR 157 193 -15 798 262 90 4 chr15 36440058 36440291 -64940230 - MIR SINE MIR -3 259 7 327 301 91 0 chr15 36441080 36441223 -64939298 - L1MB3 LINE L1 -109 6074 5919 818 130 8 0 chr15 36441224 36441347 -64939174 - AluSq/x SINE Alu -179 133 10 23 0 0 0 chr15 36441351 36441374 -64939147 + AT_rich Low_complexity Low_complexity 1 23 0 550 200 30 52 chr15 36441467 36441602 -64938919 + FLAM_C SINE Alu 1 132 -1 184 160 0 40 chr15 36441602 36441652 -64938869 + GA-rich Low_complexity Low_complexity 1 48 0 229 275 25 62 chr15 36441773 36441853 -64938668 + L2 LINE L2 3193 3269 -3 2200 89 10 0 chr15 36441952 36442245 -64938276 + AluSg SINE Alu 1 296 -14 307 294 25 50 chr15 36442320 36442480 -64938041 + L1ME LINE L1 5507 5662 -459 888 259 107 10 chr15 36442493 36442782 -64937739 - L2 LINE L2 -2 3311 2995 1161 215 24 14 chr15 36442782 36443105 -64937416 + L1MB3 LINE L1 5339 5661 -522 1443 178 20 41 chr15 36443105 36443398 -64937123 - AluJb SINE Alu -19 293 7 1676 192 0 0 chr15 36443436 36443722 -64936799 + AluJb SINE Alu 12 297 -15 2916 145 2 47 chr15 36443727 36443747 -64936774 + L1MB3 LINE L1 5662 5681 -502 2248 96 7 0 chr15 36443747 36444049 -64936472 - AluSq SINE Alu -9 304 1 2152 127 0 0 chr15 36444051 36444359 -64936162 - AluSx SINE Alu -4 308 1 2916 145 2 47 chr15 36444359 36444873 -64935648 + L1MB3 LINE L1 5682 6175 -8 710 265 131 11 chr15 36444880 36445148 -64935373 - L2 LINE L2 -412 2902 2603 2465 45 0 19 chr15 36445275 36445587 -64934934 + AluY SINE Alu 1 306 -5 272 196 93 56 chr15 36445888 36445995 -64934526 - MER58C DNA MER1_type -1 214 104 571 183 119 0 chr15 36446048 36446174 -64934347 - L1M3 LINE L1 -549 5631 5491 805 176 0 0 chr15 36446176 36446312 -64934209 - FRAM SINE Alu -1 175 40 817 146 6 53 chr15 36446346 36446408 -64934113 - L1M3 LINE L1 -683 5495 5432 2068 111 17 0 chr15 36446408 36446705 -64933816 - AluSx SINE Alu -10 302 1 817 146 6 53 chr15 36446705 36446813 -64933708 - L1M3 LINE L1 -746 5432 5333 639 179 0 0 chr15 36446817 36446923 -64933598 - FRAM SINE Alu -1 175 70 350 179 54 89 chr15 36446969 36447042 -64933479 - MER58C DNA MER1_type -99 116 47 1767 108 104 0 chr15 36447042 36447310 -64933211 + AluSg1 SINE Alu 1 296 -13 350 179 54 89 chr15 36447310 36447348 -64933173 - MER58C DNA MER1_type -168 47 9 263 226 16 0 chr15 36447350 36447412 -64933109 - MIR SINE MIR -58 150 88 558 315 67 55 chr15 36447459 36447786 -64932735 - L2 LINE L2 -1 3271 2941 2282 48 61 0 chr15 36447812 36448105 -64932416 + AluY SINE Alu 1 311 0 871 344 66 16 chr15 36448141 36448506 -64932015 - L2 LINE L2 -571 2743 2347 2127 110 7 0 chr15 36448506 36448806 -64931715 - AluSx SINE Alu -10 302 1 871 344 66 16 chr15 36448806 36448926 -64931595 - L2 LINE L2 -967 2347 2234 283 240 232 16 chr15 36448989 36449114 -64931407 + MIR3 SINE MIR 4 155 -53 1743 167 7 3 chr15 36449159 36449464 -64931057 + AluJb SINE Alu 1 306 -6 1488 187 20 23 chr15 36450309 36450608 -64929913 - AluJo SINE Alu -14 298 1 1603 153 18 64 chr15 36450635 36450961 -64929560 + AluJo SINE Alu 1 311 -1 2158 107 0 0 chr15 36451058 36451349 -64929172 + AluSx SINE Alu 1 291 -21 2230 99 0 0 chr15 36451434 36451736 -64928785 + AluSg SINE Alu 1 302 -8 1243 87 0 0 chr15 36451736 36451897 -64928624 + AluSg/x SINE Alu 134 294 -18 2143 77 40 3 chr15 36451899 36452199 -64928322 + AluY SINE Alu 1 311 0 304 300 25 0 chr15 36452461 36452541 -64927980 + LTR16C LTR ERVL 97 178 -313 2426 68 7 0 chr15 36452548 36452855 -64927666 - AluSg SINE Alu -1 309 1 447 70 0 0 chr15 36452869 36452949 -64927572 - Alu SINE Alu 0 305 226 180 158 0 0 chr15 36454041 36454079 -64926442 + (CAGGG)n Simple_repeat Simple_repeat 3 40 0 259 283 160 13 chr15 36454247 36454404 -64926117 + MIR SINE MIR 15 191 -62 484 232 91 95 chr15 36454823 36455064 -64925457 + MIR SINE MIR 23 262 0 504 115 0 0 chr15 36456626 36456704 -64923817 + MADE1 DNA Mariner 1 78 -2 840 245 62 21 chr15 36457250 36457491 -64923030 + MIR SINE MIR 2 252 -10 581 183 7 88 chr15 36457523 36457660 -64922861 - MER3 DNA MER1_type -83 126 1 922 214 48 5 chr15 36457676 36457886 -64922635 + MER20 DNA MER1_type 1 219 0 546 261 55 50 chr15 36457886 36457930 -64922591 - MIR SINE MIR -55 207 165 628 142 39 39 chr15 36457930 36458057 -64922464 + FLAM_C SINE Alu 1 127 -6 546 261 55 50 chr15 36458057 36458211 -64922310 - MIR SINE MIR -97 165 8 2532 90 0 0 chr15 36458604 36458935 -64921586 + AluSg SINE Alu 1 331 0 2372 96 0 22 chr15 36462771 36463085 -64917436 + AluSx SINE Alu 1 307 -5 2051 170 151 51 chr15 36463086 36463130 -64917391 + L1MC1 LINE L1 5239 5277 -869 2023 129 18 0 chr15 36463130 36463415 -64917106 + AluSx SINE Alu 1 290 -22 2123 128 14 0 chr15 36463415 36463712 -64916809 + AluSx SINE Alu 1 301 -11 2051 170 151 51 chr15 36463416 36463953 -64916568 + L1MC1 LINE L1 5277 5759 -387 2129 124 10 3 chr15 36463953 36464252 -64916269 - AluJb SINE Alu -11 301 1 2051 170 151 51 chr15 36464252 36464349 -64916172 + L1MC1 LINE L1 5759 5214 -932 2656 49 3 0 chr15 36464349 36464653 -64915868 + AluY SINE Alu 1 305 -6 2051 170 151 51 chr15 36464653 36464866 -64915655 + L1MC1 LINE L1 5213 5403 -743 236 174 0 37 chr15 36464882 36464947 -64915574 + Alu SINE Alu 250 290 -12 * 2036 159 58 14 chr15 36464948 36465383 -64915138 + L1MC1 LINE L1 5880 6333 0 829 176 68 179 chr15 36465383 36465648 -64914873 - Charlie1a DNA MER1_type -2424 337 122 1804 97 48 12 chr15 36465648 36465896 -64914625 + AluSx SINE Alu 43 299 -13 829 176 68 179 chr15 36465896 36466004 -64914517 - Charlie1a DNA MER1_type -2639 122 4 2599 57 3 0 chr15 36466208 36466506 -64914015 - AluSp SINE Alu -14 299 1 2248 106 0 3 chr15 36466507 36466799 -64913722 - AluSx SINE Alu -21 291 1 332 282 72 64 chr15 36466815 36466911 -64913610 + L1MEc LINE L1 876 970 -5426 2114 118 3 37 chr15 36466911 36467234 -64913287 + AluSx SINE Alu 1 312 0 332 282 72 64 chr15 36467234 36467245 -64913276 + L1MEc LINE L1 970 979 -5417 653 170 15 37 chr15 36467245 36467380 -64913141 + FLAM_C SINE Alu 2 133 0 332 282 72 64 chr15 36467380 36467397 -64913124 + L1MEc LINE L1 979 994 -5402 2145 117 13 3 chr15 36467397 36467697 -64912824 + AluSx SINE Alu 1 303 -9 332 282 72 64 chr15 36467697 36467946 -64912575 + L1MEc LINE L1 994 1254 -5142 2204 128 0 0 chr15 36467987 36468291 -64912230 + AluSx SINE Alu 1 304 -8 838 107 8 46 chr15 36468337 36468468 -64912053 + FLAM_C SINE Alu 1 126 -7 340 113 0 0 chr15 36468472 36468534 -64911987 + Tigger3(Golem) DNA MER2_type 2507 2568 -461 1020 193 0 117 chr15 36468544 36468793 -64911728 + AluJo SINE Alu 1 220 -92 2270 94 10 7 chr15 36468797 36469094 -64911427 - AluSp SINE Alu -15 298 1 1752 135 47 44 chr15 36469153 36469307 -64911214 - AluJb SINE Alu -13 299 142 2316 97 20 0 chr15 36469307 36469606 -64910915 - AluSq SINE Alu -8 305 1 1752 135 47 44 chr15 36469606 36469748 -64910773 - AluJb SINE Alu -170 142 2 2524 125 75 7 chr15 36469754 36470179 -64910342 + Tigger3(Golem) DNA MER2_type 2574 3027 -2 747 126 39 24 chr15 36470228 36470355 -64910166 + FLAM_C SINE Alu 5 133 0 1928 164 10 3 chr15 36470718 36471011 -64909510 - AluJb SINE Alu -17 295 1 527 280 142 19 chr15 36471092 36471344 -64909177 - L2 LINE L2 -1292 2022 1736 2430 108 0 3 chr15 36471344 36471658 -64908863 + AluSq SINE Alu 1 313 0 357 294 157 13 chr15 36472754 36472907 -64907614 - MER5B DNA MER1_type -3 175 1 595 255 43 16 chr15 36472950 36473028 -64907493 + MIR SINE MIR 74 148 -114 846 167 0 0 chr15 36473028 36473160 -64907361 + FLAM_C SINE Alu 1 132 -1 595 255 43 16 chr15 36473160 36473265 -64907256 + MIR SINE MIR 148 262 0 780 183 62 67 chr15 36473465 36473569 -64906952 + MER3 DNA MER1_type 3 106 -103 2299 102 13 0 chr15 36473569 36473873 -64906648 + AluSp SINE Alu 1 308 -5 780 183 62 67 chr15 36473873 36473976 -64906545 + MER3 DNA MER1_type 106 209 0 1894 157 13 16 chr15 36473981 36474332 -64906189 + AluJb SINE Alu 1 350 0 2272 106 0 3 chr15 36475925 36476226 -64904295 - AluSg SINE Alu -10 300 1 823 153 0 0 chr15 36476245 36476376 -64904145 + FLAM_C SINE Alu 1 131 -2 1270 185 22 63 chr15 36476401 36476502 -64904019 + AluJo SINE Alu 37 141 -171 2446 106 0 0 chr15 36476502 36476813 -64903708 + AluSx SINE Alu 1 311 -1 1270 185 22 63 chr15 36476813 36476981 -64903540 + AluJo SINE Alu 141 295 -17 346 285 229 28 chr15 36477077 36477256 -64903265 + MIR SINE MIR 20 234 -28 192 321 0 0 chr15 36477556 36477612 -64902909 - L2 LINE L2 0 3272 3217 851 171 0 0 chr15 36477638 36477767 -64902754 + AluJo/FLAM SINE Alu 5 133 -179 2406 94 0 19 chr15 36477767 36478111 -64902410 + AluSq SINE Alu 1 313 0 671 298 85 58 chr15 36478115 36478811 -64901710 - L2 LINE L2 -69 3203 2495 2599 57 3 16 chr15 36478893 36479210 -64901311 + AluSp SINE Alu 1 313 0 2445 76 7 0 chr15 36479656 36479960 -64900561 + AluY SINE Alu 1 306 -5 456 263 56 62 chr15 36479964 36480018 -64900503 - L1ME4a LINE L1 -11 6110 6057 2017 98 58 4 chr15 36480018 36480292 -64900229 + AluSg SINE Alu 1 289 -21 456 263 56 62 chr15 36480292 36480416 -64900105 - L1ME4a LINE L1 -64 6057 5933 2293 106 3 0 chr15 36480429 36480443 -64900078 - AluSx SINE Alu -8 304 292 799 21 27 64 chr15 36480443 36480630 -64899891 + (TA)n Simple_repeat Simple_repeat 1 180 0 2293 106 3 0 chr15 36480630 36480918 -64899603 - AluSx SINE Alu -20 292 1 2079 104 35 10 chr15 36481203 36481357 -64899164 - AluSx SINE Alu -16 296 130 2557 72 0 3 chr15 36481357 36481663 -64898858 - AluSq SINE Alu -8 305 1 2079 104 35 10 chr15 36481663 36481797 -64898724 - AluSx SINE Alu -182 130 1 461 279 139 0 chr15 36481837 36482038 -64898483 + MER112 DNA MER1_type 9 237 -23 523 310 35 13 chr15 36482055 36482281 -64898240 - L1ME4a LINE L1 -340 5781 5551 1358 239 92 43 chr15 36482326 36482836 -64897685 - MLT1F1 LTR MaLR -32 535 1 485 257 49 27 chr15 36482861 36483044 -64897477 - L1MA7 LINE L1 -116 6175 5989 1451 57 21 0 chr15 36483092 36483311 -64897210 + L1PA10 LINE L1 5953 6175 0 2396 92 13 0 chr15 36483318 36483622 -64896899 + AluSp SINE Alu 5 312 -1 2403 96 3 0 chr15 36483662 36483955 -64896566 + AluSp SINE Alu 1 294 -19 1863 146 125 0 chr15 36483959 36484302 -64896219 - MER57A LTR ERV1 -17 386 1 1908 159 3 3 chr15 36484354 36484643 -64895878 + AluJo SINE Alu 1 289 -23 600 240 130 66 chr15 36484720 36485230 -64895291 - MLT1G1 LTR MaLR 0 595 2 2163 148 0 3 chr15 36485482 36485792 -64894729 + AluSx SINE Alu 1 309 -3 229 257 162 9 chr15 36485894 36485999 -64894522 + MIR SINE MIR 31 151 -57 2338 78 0 0 chr15 36485999 36486312 -64894209 - AluSc SINE Alu 0 313 1 720 136 85 0 chr15 36486328 36486446 -64894075 - FLAM_C SINE Alu -5 128 1 236 340 53 20 chr15 36486795 36486945 -64893576 - L1ME4a LINE L1 -11 6110 5956 2028 146 0 13 chr15 36487068 36487377 -64893144 - AluJo SINE Alu -7 305 1 4035 111 32 14 chr15 36487377 36488025 -64892496 - L1PA16 LINE L1 -11 6155 5496 198 71 0 0 chr15 36488026 36488054 -64892467 + (TTG)n Simple_repeat Simple_repeat 2 29 0 610 234 81 62 chr15 36488056 36488288 -64892233 - MIR SINE MIR -6 256 6 749 229 65 16 chr15 36488517 36488762 -64891759 + MIR SINE MIR 5 261 -1 2151 111 11 0 chr15 36488848 36489166 -64891355 + AluSx SINE Alu 1 321 0 26 30 0 0 chr15 36490275 36490308 -64890213 + GC_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr15 36490931 36490959 -64889562 + GC_rich Low_complexity Low_complexity 1 28 0 1926 110 0 71 chr15 36491491 36491801 -64888720 - AluSq SINE Alu 0 313 26 413 95 0 32 chr15 36491836 36491899 -64888622 - 7SK RNA RNA -132 61 1 375 287 22 15 chr15 36492754 36492890 -64887631 - MIR SINE MIR -79 183 47 205 250 0 0 chr15 36493877 36493917 -64886604 + C-rich Low_complexity Low_complexity 3 42 0 637 298 37 0 chr15 36494689 36494880 -64885641 + L1MC4a LINE L1 5558 5755 -2053 295 243 64 50 chr15 36494990 36495130 -64885391 + L1MC4a LINE L1 5754 5895 -1913 1637 185 22 35 chr15 36495281 36495321 -64885200 - AluJb SINE Alu -2 310 271 2549 69 0 0 chr15 36495321 36495625 -64884896 + AluY SINE Alu 1 304 -7 1637 185 22 35 chr15 36495625 36495898 -64884623 - AluJb SINE Alu -41 271 1 472 261 31 8 chr15 36496029 36496159 -64884362 + MIR SINE MIR 21 153 -109 1027 218 60 4 chr15 36496200 36496416 -64884105 - MER58B DNA MER1_type -2079 341 108 2462 77 10 3 chr15 36496416 36496726 -64883795 - AluSp SINE Alu -1 312 1 1027 218 60 4 chr15 36496726 36496757 -64883764 - MER58B DNA MER1_type -2312 108 80 2306 99 7 3 chr15 36497502 36497806 -64882715 - AluSc SINE Alu -4 305 1 1322 196 152 44 chr15 36498032 36498094 -64882427 - MLT1D LTR MaLR -1 504 450 2221 113 0 0 chr15 36498094 36498401 -64882120 + AluSx SINE Alu 1 307 0 1322 196 152 44 chr15 36498401 36498792 -64881729 - MLT1D LTR MaLR -55 450 1 345 24 0 0 chr15 36498978 36499020 -64881501 + (TG)n Simple_repeat Simple_repeat 2 43 0 835 188 61 0 chr15 36499081 36499246 -64881275 + FAM SINE Alu 1 175 0 702 218 182 53 chr15 36501240 36501457 -64879064 + MER113 DNA MER1_type? 3 191 -330 1985 165 0 0 chr15 36501457 36501760 -64878761 + AluJb SINE Alu 2 304 -8 702 218 182 53 chr15 36501760 36501832 -64878689 + MER113 DNA MER1_type? 191 252 -269 777 152 8 0 chr15 36501832 36501957 -64878564 + FLAM_A SINE Alu 1 126 -7 702 218 182 53 chr15 36501957 36502024 -64878497 + MER113 DNA MER1_type? 252 406 -115 327 280 140 7 chr15 36502708 36502858 -64877663 + MER117 DNA MER1_type 4 173 -24 181 213 85 0 chr15 36504570 36504617 -64875904 - L2 LINE L2 -1 3312 3262 280 333 82 0 chr15 36504657 36504792 -64875729 - MIR SINE MIR -38 224 79 411 230 44 44 chr15 36504874 36505009 -64875512 - L1ME3A LINE L1 -9 6161 6027 224 323 16 0 chr15 36505476 36505538 -64874983 + L2 LINE L2 3199 3261 -11 230 309 15 0 chr15 36505740 36505808 -64874713 - L2 LINE L2 -56 3257 3189 2433 106 0 0 chr15 36506317 36506628 -64873893 + AluSx SINE Alu 1 311 -1 2719 154 49 24 chr15 36506635 36507141 -64873380 + L1MB3 LINE L1 5664 6182 -1 2222 100 3 0 chr15 36507348 36507648 -64872873 + AluSx SINE Alu 1 301 -11 375 269 90 45 chr15 36507783 36507939 -64872582 + Charlie8 DNA MER1_type 1 163 -2254 2068 110 0 23 chr15 36508067 36508375 -64872146 - AluSp SINE Alu -12 301 1 2186 90 7 0 chr15 36509000 36509300 -64871221 - AluSx SINE Alu -10 302 1 2060 96 0 26 chr15 36509659 36509961 -64870560 - AluY SINE Alu -11 300 7 316 287 9 26 chr15 36510183 36510298 -64870223 - MIR SINE MIR -69 139 27 191 301 68 58 chr15 36510577 36510680 -64869841 - MIR SINE MIR -62 146 43 192 254 63 0 chr15 36511479 36511542 -64868979 + MIR3 SINE MIR 12 78 -130 1888 161 0 0 chr15 36511603 36511894 -64868627 + AluJb SINE Alu 1 291 -21 2218 105 0 19 chr15 36511897 36512211 -64868310 + AluSx SINE Alu 3 310 -2 2284 99 0 0 chr15 36512837 36513131 -64867390 - AluSx SINE Alu -18 294 1 577 285 90 100 chr15 36513570 36513803 -64866718 + L1ME4a LINE L1 5704 5938 -183 2098 114 7 0 chr15 36513803 36514101 -64866420 + AluSx SINE Alu 1 300 -12 577 285 90 100 chr15 36514101 36514181 -64866340 + L1ME4a LINE L1 5938 6017 -104 2231 86 7 0 chr15 36514181 36514472 -64866049 - AluSc SINE Alu -16 293 1 577 285 90 100 chr15 36514472 36514567 -64865954 + L1ME4a LINE L1 6017 6109 -12 1532 187 13 43 chr15 36514572 36514877 -64865644 + AluJo SINE Alu 1 296 -16 2248 107 0 0 chr15 36514878 36515178 -64865343 + AluSx SINE Alu 1 300 -12 1133 138 0 17 chr15 36515178 36515341 -64865180 + AluSg/x SINE Alu 134 295 -17 2481 68 0 0 chr15 36515341 36515652 -64864869 + AluY SINE Alu 1 311 0 1133 138 0 17 chr15 36515652 36515669 -64864852 + AluSg/x SINE Alu 295 311 -1 429 268 63 16 chr15 36516821 36516948 -64863573 - MIR3 SINE MIR -32 176 44 366 132 0 0 chr15 36517186 36517262 -64863259 + (CA)n Simple_repeat Simple_repeat 1 76 0 2118 119 0 0 chr15 36517382 36517684 -64862837 + AluSg SINE Alu 1 302 -8 21 71 0 0 chr15 36520423 36520465 -64860056 + GC_rich Low_complexity Low_complexity 1 42 0 227 190 17 17 chr15 36520842 36520900 -64859621 + L1MC/D LINE L1 5856 5913 -1895 742 232 71 0 chr15 36521029 36521184 -64859337 + FRAM SINE Alu 1 166 0 573 161 9 36 chr15 36521191 36521303 -64859218 - Tigger2 DNA MER2_type -2 2716 2608 2208 92 0 22 chr15 36521303 36521617 -64858904 + AluSx SINE Alu 2 308 -4 995 141 7 0 chr15 36521618 36521795 -64858726 + AluSg/x SINE Alu 135 312 0 2280 82 3 16 chr15 36521795 36522110 -64858411 + AluY SINE Alu 1 311 0 1112 93 0 0 chr15 36522140 36522280 -64858241 - AluSq/x SINE Alu -170 142 3 824 128 77 13 chr15 36522324 36522480 -64858041 - Tigger2 DNA MER2_type -270 2448 2283 1492 163 17 30 chr15 36522480 36522781 -64857740 - AluJo SINE Alu -15 297 1 389 162 15 0 chr15 36522793 36522861 -64857660 - Tigger2 DNA MER2_type -2649 69 1 2299 65 3 3 chr15 36523489 36523779 -64856742 + AluSx SINE Alu 3 292 -20 1622 162 29 0 chr15 36523836 36524114 -64856407 - AluSx SINE Alu 0 312 27 2720 13 0 13 chr15 36524445 36524759 -64855762 - AluYb8 SINE Alu -8 310 1 418 288 104 25 chr15 36524780 36524943 -64855578 + MIR3 SINE MIR 33 208 0 423 56 0 0 chr15 36524985 36525039 -64855482 + (CA)n Simple_repeat Simple_repeat 2 55 0 331 82 0 0 chr15 36525515 36525564 -64854957 + L1MC3 LINE L1 6762 6810 -975 186 71 0 0 chr15 36525575 36525603 -64854918 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1544 149 36 58 chr15 36525612 36525921 -64854600 + AluJb SINE Alu 2 303 -9 201 74 0 0 chr15 36526119 36526146 -64854375 + (TG)n Simple_repeat Simple_repeat 2 28 0 2064 118 3 3 chr15 36526265 36526561 -64853960 - AluSx SINE Alu -16 296 1 2179 116 0 3 chr15 36526734 36527045 -64853476 + AluSx SINE Alu 1 310 -2 262 157 24 48 chr15 36527285 36527368 -64853153 + (TATAA)n Simple_repeat Simple_repeat 2 82 0 1644 179 3 7 chr15 36527449 36527751 -64852770 - AluJb SINE Alu -10 302 2 2083 118 7 0 chr15 36528140 36528444 -64852077 - AluSx SINE Alu 0 312 7 2225 94 3 0 chr15 36528465 36528772 -64851749 - AluSg SINE Alu -2 308 1 627 169 62 39 chr15 36528773 36528903 -64851618 - FLAM_A SINE Alu 0 133 1 240 207 52 0 chr15 36528905 36528963 -64851558 - L1ME LINE L1 -288 5876 5816 992 153 33 6 chr15 36528974 36529157 -64851364 - AluJo SINE Alu -4 308 121 1386 169 89 28 chr15 36529159 36529196 -64851325 - L1ME LINE L1 -352 5812 5779 2025 127 0 0 chr15 36529196 36529496 -64851025 - AluSq SINE Alu -5 308 9 1386 169 89 28 chr15 36529496 36529784 -64850737 - L1ME LINE L1 -385 5779 5467 2142 105 7 0 chr15 36529784 36530079 -64850442 + AluSq SINE Alu 2 298 -15 2084 118 0 0 chr15 36530081 36530370 -64850151 + AluSg SINE Alu 1 289 -21 23 0 0 0 chr15 36530370 36530393 -64850128 + AT_rich Low_complexity Low_complexity 1 23 0 1577 124 0 4 chr15 36530449 36530683 -64849838 - AluSg SINE Alu -77 233 1 787 174 0 0 chr15 36530735 36530850 -64849671 + FLAM_C SINE Alu 2 116 -27 213 333 0 0 chr15 36530971 36531025 -64849496 - L2 LINE L2 0 3272 3219 1799 91 121 11 chr15 36531246 36531511 -64849010 - AluSg SINE Alu -16 294 1 229 294 0 59 chr15 36531541 36531626 -64848895 - MIR3 SINE MIR -39 169 90 375 180 0 8 chr15 36531835 36531847 -64848674 - AluJ/FLAM SINE Alu -224 78 67 1524 128 0 25 chr15 36531847 36532089 -64848432 - AluJo SINE Alu -5 307 72 2297 95 0 0 chr15 36532089 36532393 -64848128 - AluSq SINE Alu -9 304 1 375 180 0 8 chr15 36532393 36532458 -64848063 - AluJ/FLAM SINE Alu -233 69 14 579 292 58 13 chr15 36532469 36532695 -64847826 - Charlie2 DNA MER1_type -2626 236 1 997 139 61 6 chr15 36533264 36533429 -64847092 - AluSg/x SINE Alu -4 306 133 1791 158 86 53 chr15 36533436 36533866 -64846655 + L1MC3 LINE L1 7076 7519 -266 1108 148 43 74 chr15 36533866 36533985 -64846536 - MER44D DNA MER2_type -1972 519 398 2348 72 3 10 chr15 36533985 36534291 -64846230 + AluSp SINE Alu 1 304 -9 2132 122 0 0 chr15 36534300 36534604 -64845917 + AluSx SINE Alu 1 304 -8 1108 148 43 74 chr15 36534604 36534731 -64845790 - MER44D DNA MER2_type -2101 390 1 271 173 30 179 chr15 36534735 36534769 -64845752 + L1MC3 LINE L1 6883 6920 -865 2217 98 3 0 chr15 36534769 36535076 -64845445 + AluSc SINE Alu 1 308 -1 271 173 30 179 chr15 36535076 36535177 -64845344 + L1MC3 LINE L1 6920 6991 -794 2254 110 0 0 chr15 36535177 36535508 -64845013 + AluSx SINE Alu 1 312 0 271 173 30 179 chr15 36535508 36535539 -64844982 + L1MC3 LINE L1 6991 7025 -760 1152 185 24 26 chr15 36535540 36535723 -64844798 + L1MC3 LINE L1 7187 7369 -416 1732 156 0 50 chr15 36535723 36535951 -64844570 + AluJb SINE Alu 1 211 -101 2008 108 7 0 chr15 36535951 36536250 -64844271 + AluSx SINE Alu 1 301 0 1732 156 0 50 chr15 36536250 36536341 -64844180 + AluJb SINE Alu 211 305 -7 1152 185 24 26 chr15 36536341 36536510 -64844011 + L1MC3 LINE L1 7369 7537 -248 2439 62 0 7 chr15 36536510 36536819 -64843702 - AluY SINE Alu -4 307 1 1152 185 24 26 chr15 36536819 36536852 -64843669 + L1MC3 LINE L1 7537 7774 -11 956 118 0 15 chr15 36536853 36536988 -64843533 - FLAM_C SINE Alu 0 133 1 205 288 96 0 chr15 36537393 36537466 -64843055 + L2 LINE L2 2454 2533 -781 186 43 0 0 chr15 36537738 36537761 -64842760 + (TTTCC)n Simple_repeat Simple_repeat 3 25 0 2020 159 0 0 chr15 36537769 36538078 -64842443 - AluSx SINE Alu -3 309 1 849 163 48 0 chr15 36538414 36538561 -64841960 + FRAM SINE Alu 1 154 -22 451 246 106 39 chr15 36538637 36538816 -64841705 - MIR SINE MIR -14 248 58 409 264 66 0 chr15 36539968 36540074 -64840447 + L2 LINE L2 3198 3310 -3 485 315 42 6 chr15 36540093 36540258 -64840263 + L2 LINE L2 3102 3272 0 1444 166 101 25 chr15 36542614 36542887 -64837634 + AluJo SINE Alu 1 295 -3 2190 121 0 0 chr15 36542887 36543200 -64837321 + AluSq SINE Alu 1 313 0 369 275 23 0 chr15 36543233 36543364 -64837157 + L1ME4a LINE L1 5690 5823 -1985 2163 97 3 3 chr15 36543372 36543670 -64836851 + AluSq SINE Alu 1 298 -15 292 279 16 62 chr15 36543989 36544118 -64836403 + MIR SINE MIR 140 262 0 886 133 13 25 chr15 36544300 36544313 -64836208 - BC200 scRNA scRNA -43 157 145 2261 67 40 0 chr15 36544313 36544612 -64835909 - AluY SINE Alu 0 311 1 886 133 13 25 chr15 36544612 36544756 -64835765 - BC200 scRNA scRNA -55 145 2 1850 156 7 7 chr15 36544828 36545130 -64835391 - AluJb SINE Alu -10 302 1 664 194 65 69 chr15 36547491 36547674 -64832847 + MIR SINE MIR 16 198 -64 2204 103 30 0 chr15 36547674 36547975 -64832546 + AluSg SINE Alu 1 310 0 2239 110 0 0 chr15 36547982 36548282 -64832239 + AluSx SINE Alu 1 300 -12 664 194 65 69 chr15 36548282 36548307 -64832214 + MIR SINE MIR 204 231 -31 410 292 8 17 chr15 36548333 36548453 -64832068 + MER5A DNA MER1_type 41 159 -30 2374 77 0 3 chr15 36548460 36548772 -64831749 - AluY SINE Alu 0 311 1 2331 82 0 0 chr15 36550668 36550962 -64829559 + AluY SINE Alu 3 296 -15 835 184 7 0 chr15 36551453 36551594 -64828927 + FRAM SINE Alu 1 140 -36 2268 92 7 0 chr15 36551595 36551901 -64828620 - AluSx SINE Alu -4 308 1 1631 173 23 17 chr15 36555014 36555315 -64825206 - AluJo SINE Alu -9 303 1 321 304 124 7 chr15 36555563 36555736 -64824785 + MIR SINE MIR 5 192 -65 185 374 35 9 chr15 36557043 36557158 -64823363 + MIR3 SINE MIR 37 154 -54 1579 178 14 11 chr15 36557509 36557795 -64822726 - AluSx SINE Alu -19 293 7 258 264 96 24 chr15 36558421 36558473 -64822048 + L1ME4a LINE L1 5894 5941 -180 2230 112 7 0 chr15 36558473 36558769 -64821752 + AluSx SINE Alu 1 298 -14 258 264 96 24 chr15 36558769 36558841 -64821680 + L1ME4a LINE L1 5941 6027 -94 227 95 48 0 chr15 36558851 36558893 -64821628 - Alu SINE Alu -6 293 250 441 227 9 150 chr15 36559947 36560167 -64820354 - AluSc SINE Alu -119 190 2 1555 193 13 46 chr15 36560268 36560574 -64819947 + AluJo SINE Alu 1 296 -16 2396 106 0 0 chr15 36560575 36560876 -64819645 + AluSx SINE Alu 1 301 -11 1204 137 0 16 chr15 36560876 36561039 -64819482 + AluSg/x SINE Alu 132 293 -17 2566 77 0 0 chr15 36561039 36561350 -64819171 + AluY SINE Alu 1 311 0 1204 137 0 16 chr15 36561350 36561368 -64819153 + AluSg/x SINE Alu 293 310 0 428 268 63 16 chr15 36562520 36562647 -64817874 - MIR3 SINE MIR -32 176 44 366 132 0 0 chr15 36562884 36562960 -64817561 + (CA)n Simple_repeat Simple_repeat 1 76 0 2021 149 0 0 chr15 36563080 36563382 -64817139 + AluSg SINE Alu 1 302 -8 727 172 14 21 chr15 36566015 36566160 -64814361 - AluSg SINE Alu -165 145 2 541 172 66 41 chr15 36566170 36566292 -64814229 - FLAM_A SINE Alu -8 125 1 242 207 52 0 chr15 36566294 36566352 -64814169 - L1ME LINE L1 -288 5876 5816 1076 148 33 6 chr15 36566363 36566546 -64813975 - AluJo SINE Alu -4 308 121 1406 152 108 9 chr15 36566548 36566585 -64813936 - L1ME LINE L1 -352 5812 5780 2124 132 0 10 chr15 36566585 36566896 -64813625 - AluSq SINE Alu -5 308 1 1406 152 108 9 chr15 36566896 36567173 -64813348 - L1ME LINE L1 -384 5780 5467 2288 114 7 0 chr15 36567173 36567481 -64813040 + AluSq SINE Alu 2 311 -2 2196 133 0 0 chr15 36567490 36567799 -64812722 + AluSx SINE Alu 1 309 -3 401 284 71 0 chr15 36567799 36567968 -64812553 - L1M4 LINE L1 -1560 4586 4406 976 119 63 0 chr15 36567986 36568129 -64812392 + AluSx SINE Alu 1 152 -161 321 309 36 14 chr15 36569017 36569156 -64811365 - MIR SINE MIR -59 203 62 557 216 8 15 chr15 36569310 36569444 -64811077 + AluSx SINE Alu 158 290 -22 23 0 0 0 chr15 36569444 36569467 -64811054 + AT_rich Low_complexity Low_complexity 1 23 0 1430 131 59 5 chr15 36569528 36569749 -64810772 - AluSg SINE Alu -77 233 1 810 172 0 0 chr15 36569800 36569916 -64810605 + FLAM_C SINE Alu 1 116 -27 210 333 0 0 chr15 36570037 36570091 -64810430 - L2 LINE L2 0 3272 3219 1927 91 121 11 chr15 36570312 36570577 -64809944 - AluSg SINE Alu -16 294 1 221 294 0 59 chr15 36570607 36570692 -64809829 - MIR3 SINE MIR -39 169 90 366 180 0 8 chr15 36570901 36570913 -64809608 - AluJ/FLAM SINE Alu -224 78 67 1611 128 0 25 chr15 36570913 36571155 -64809366 - AluJo SINE Alu -5 307 72 2457 92 0 0 chr15 36571155 36571459 -64809062 - AluSq SINE Alu -9 304 1 366 180 0 8 chr15 36571459 36571524 -64808997 - AluJ/FLAM SINE Alu -233 69 14 538 292 58 13 chr15 36571535 36571761 -64808760 - Charlie2 DNA MER1_type -2626 236 1 838 177 27 21 chr15 36572134 36572320 -64808201 + AluSq SINE Alu 115 301 -12 942 83 8 0 chr15 36573265 36573385 -64807136 + AluSg SINE Alu 1 121 -189 1580 143 8 8 chr15 36573506 36573757 -64806764 + AluSx SINE Alu 53 303 -9 295 230 20 50 chr15 36578229 36578329 -64802192 - MER5A DNA MER1_type -83 106 10 694 156 8 23 chr15 36580338 36580466 -64800055 - AluJb SINE Alu -29 283 158 1054 427 60 0 chr15 36580570 36580851 -64799670 + AluSc SINE Alu 1 298 -1 248 313 125 14 chr15 36581572 36581716 -64798805 - MLT1J LTR MaLR -52 459 300 2361 111 0 0 chr15 36581744 36582050 -64798471 + AluSx SINE Alu 1 306 -6 2038 172 14 19 chr15 36582372 36582739 -64797782 - MLT2B3 LTR ERVL -8 546 182 305 14 0 0 chr15 36582741 36582784 -64797737 - MLT2B3 LTR ERVL -354 43 1 243 0 0 0 chr15 36582925 36582952 -64797569 + (TG)n Simple_repeat Simple_repeat 1 27 0 289 217 114 66 chr15 36583286 36583452 -64797069 + MER69 DNA AcHobo 2119 2292 -234 547 134 41 0 chr15 36583452 36583549 -64796972 + L1MB8 LINE L1 5516 5616 -568 1111 222 31 88 chr15 36583555 36583974 -64796547 + MLT2D LTR ERVL 20 414 0 2153 168 50 75 chr15 36583976 36584063 -64796458 + L1MB8 LINE L1 5611 5699 -479 1905 158 3 7 chr15 36584063 36584367 -64796154 + AluSx SINE Alu 1 303 -9 2153 168 50 75 chr15 36584367 36584862 -64795659 + L1MB8 LINE L1 5699 6178 0 306 171 12 61 chr15 36584894 36584976 -64795545 + MER116 DNA Mariner 2 79 -1 2003 144 10 22 chr15 36585014 36585327 -64795194 - AluJb SINE Alu -3 309 1 414 136 38 98 chr15 36585341 36585473 -64795048 + MER69 DNA AcHobo 2396 2519 -7 30 27 0 0 chr15 36585800 36585837 -64794684 + AT_rich Low_complexity Low_complexity 1 37 0 863 113 8 16 chr15 36586024 36586148 -64794373 - AluSp SINE Alu -190 123 1 1000 78 0 28 chr15 36586151 36586292 -64794229 + MER57-int LTR ERV1 6401 6537 -1000 2280 87 10 0 chr15 36586293 36586592 -64793929 + AluY SINE Alu 1 302 -9 2435 61 14 0 chr15 36586597 36586890 -64793631 + AluSp SINE Alu 2 298 -15 233 267 53 13 chr15 36587031 36587106 -64793415 - MER5A DNA MER1_type -108 81 4 619 250 30 6 chr15 36587512 36587721 -64792800 + L1ME4a LINE L1 5682 5896 -225 1587 176 30 44 chr15 36587950 36588245 -64792276 - AluJb SINE Alu -21 291 1 623 214 0 8 chr15 36588279 36588410 -64792111 + FLAM_A SINE Alu 1 130 -3 1661 165 3 53 chr15 36588565 36588868 -64791653 - AluJb SINE Alu -21 291 4 229 129 32 16 chr15 36588877 36588939 -64791582 + L1ME4a LINE L1 6051 6113 -8 709 186 0 0 chr15 36589025 36589143 -64791378 - FLAM_C SINE Alu -15 128 11 2040 123 3 7 chr15 36589205 36589497 -64791024 + AluSx SINE Alu 1 291 -21 631 229 7 0 chr15 36590839 36590979 -64789542 + AluY SINE Alu 153 293 -18 255 248 166 25 chr15 36590982 36591139 -64789382 + MER20B DNA MER1_type 530 708 -75 244 292 56 0 chr15 36591345 36591434 -64789087 - L1MC4a LINE L1 -1636 6172 6079 329 296 90 32 chr15 36592339 36592419 -64788102 - L2 LINE L2 0 3313 3239 2210 96 17 20 chr15 36592419 36592720 -64787801 + AluSx SINE Alu 1 300 -12 329 296 90 32 chr15 36592720 36592828 -64787693 - L2 LINE L2 -74 3239 3114 592 245 7 0 chr15 36592835 36592974 -64787547 + FLAM_C SINE Alu 2 141 -2 476 323 38 5 chr15 36593016 36593202 -64787319 - MIR SINE MIR -51 211 20 313 248 166 21 chr15 36593224 36593369 -64787152 - MIR3 SINE MIR -24 184 19 417 250 86 89 chr15 36593579 36593903 -64786618 - L2 LINE L2 -5 3267 2945 3472 170 51 72 chr15 36594832 36596297 -64784224 - pTR5 LTR ERV1 0 2606 1524 485 233 95 0 chr15 36596793 36596909 -64783612 + MER94 DNA DNA 8 134 0 2254 98 3 7 chr15 36598076 36598373 -64782148 - AluSx SINE Alu -10 302 7 464 165 22 0 chr15 36598373 36598464 -64782057 + Charlie1 DNA MER1_type 2649 2741 -20 375 309 125 38 chr15 36598534 36599117 -64781404 + L2 LINE L2 1814 2447 -867 372 325 118 14 chr15 36599504 36599716 -64780805 + L2 LINE L2 3036 3269 -3 29 47 0 0 chr15 36599935 36599978 -64780543 + AT_rich Low_complexity Low_complexity 1 43 0 1058 108 0 22 chr15 36600356 36600495 -64780026 - AluJo SINE Alu -176 136 1 219 261 81 4 chr15 36601042 36601136 -64779385 + MER91B DNA MER1_type 1 103 -37 204 125 0 0 chr15 36601402 36601434 -64779087 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 1980 108 76 4 chr15 36602658 36602935 -64777586 + AluSx SINE Alu 1 297 -15 2314 121 0 3 chr15 36602946 36603275 -64777246 + AluSx SINE Alu 1 312 0 301 287 233 0 chr15 36603316 36603445 -64777076 + MER5A DNA MER1_type 7 165 -24 23 78 0 0 chr15 36604646 36604697 -64775824 + GC_rich Low_complexity Low_complexity 1 51 0 300 267 97 62 chr15 36606195 36606371 -64774150 + L1ME LINE L1 5503 5684 -437 345 320 10 30 chr15 36606496 36606824 -64773697 + CT-rich Low_complexity Low_complexity 1 321 0 23 33 0 0 chr15 36607099 36607129 -64773392 + AT_rich Low_complexity Low_complexity 1 30 0 2110 138 3 10 chr15 36607129 36607427 -64773094 + AluJb SINE Alu 2 297 -15 409 275 123 43 chr15 36607701 36607912 -64772609 - MIR SINE MIR -12 250 23 205 370 7 34 chr15 36609910 36610056 -64770465 - MIR3 SINE MIR -25 183 42 862 88 95 54 chr15 36610167 36610314 -64770207 + AluSq SINE Alu 1 153 -160 531 165 0 0 chr15 36610314 36610399 -64770122 + AluSg/x SINE Alu 214 298 -11 312 196 0 0 chr15 36610400 36610451 -64770070 + L1MC4 LINE L1 6652 6702 -1340 * 317 252 113 53 chr15 36610428 36610579 -64769942 - L1MCa LINE L1 -4371 2055 1896 2236 93 0 34 chr15 36610812 36611134 -64769387 + AluSx SINE Alu 2 312 0 532 315 99 9 chr15 36611323 36611536 -64768985 + MIR SINE MIR 31 262 0 1710 148 14 3 chr15 36611752 36612035 -64768486 - AluJb SINE Alu -26 286 1 976 171 0 6 chr15 36612038 36612202 -64768319 - AluJo/FRAM SINE Alu -16 296 134 1899 143 3 7 chr15 36612202 36612503 -64768018 - AluJb SINE Alu -12 300 1 3896 161 33 1 chr15 36614216 36614905 -64765616 + MER50 LTR ERV1 1 711 -23 23 97 0 0 chr15 36615664 36615736 -64764785 + GC_rich Low_complexity Low_complexity 1 72 0 2439 63 0 0 chr15 36617922 36618225 -64762296 - AluY SINE Alu -8 303 1 186 71 0 0 chr15 36618740 36618768 -64761753 + (A)n Simple_repeat Simple_repeat 1 28 0 351 319 112 27 chr15 36621709 36621897 -64758624 + MIR SINE MIR 46 249 -13 209 59 59 0 chr15 36623300 36623334 -64757187 + CT-rich Low_complexity Low_complexity 4 39 0 1840 141 47 0 chr15 36623339 36623637 -64756884 - AluSx SINE Alu 0 312 1 1468 106 51 0 chr15 36623647 36623864 -64756657 - AluY SINE Alu 0 311 84 231 315 11 0 chr15 36624036 36624128 -64756393 - L2 LINE L2 -214 3058 2966 287 25 25 0 chr15 36624389 36624429 -64756092 + (CA)n Simple_repeat Simple_repeat 2 42 0 364 209 11 22 chr15 36632980 36633071 -64747450 + MIR SINE MIR 68 157 -105 1903 119 3 14 chr15 36633076 36633406 -64747115 + AluSx SINE Alu 1 327 0 599 285 12 6 chr15 36635302 36635467 -64745054 + L3b LINE CR1 1220 1385 -198 1908 106 0 0 chr15 36635869 36636133 -64744388 + AluSq SINE Alu 48 311 -2 1837 140 3 29 chr15 36636147 36636454 -64744067 + AluSx SINE Alu 3 301 -11 2171 94 20 0 chr15 36637077 36637374 -64743147 + AluSx SINE Alu 4 306 -6 335 272 29 10 chr15 36638171 36638274 -64742247 - L3 LINE CR1 -117 1460 1356 1728 176 0 3 chr15 36640382 36640678 -64739843 - AluJb SINE Alu -15 297 3 320 206 21 62 chr15 36641718 36641815 -64738706 - MER5B DNA MER1_type -85 93 1 362 151 0 17 chr15 36642687 36642753 -64737768 + FLAM SINE Alu 61 117 -16 1810 150 3 19 chr15 36642777 36643090 -64737431 + AluSg SINE Alu 3 310 0 529 158 11 0 chr15 36643129 36643224 -64737297 - LTR54B LTR ERV1 -399 99 4 1082 187 13 24 chr15 36643224 36643510 -64737011 - MER57-int LTR ERV1 -655 6882 6646 23 0 0 0 chr15 36643947 36643970 -64736551 + AT_rich Low_complexity Low_complexity 1 23 0 228 210 12 68 chr15 36644077 36644313 -64736208 + (ATAAG)n Simple_repeat Simple_repeat 1 222 0 25 51 0 0 chr15 36644519 36644558 -64735963 + AT_rich Low_complexity Low_complexity 1 39 0 219 186 119 17 chr15 36645039 36645098 -64735423 + MIR SINE MIR 55 119 -143 46 16 0 16 chr15 36645760 36645779 -64734742 + AT_rich Low_complexity Low_complexity 1 19 -44 1867 98 0 35 chr15 36645779 36646064 -64734457 + AluSq SINE Alu 33 307 -6 46 16 0 16 chr15 36646064 36646108 -64734413 + AT_rich Low_complexity Low_complexity 19 63 0 836 141 0 22 chr15 36646167 36646302 -64734219 + FLAM_C SINE Alu 1 132 -1 595 274 40 45 chr15 36647647 36647870 -64732651 - MIR SINE MIR 0 262 41 879 128 13 159 chr15 36648763 36648811 -64731710 + MER51B-int LTR ERV1 7623 7676 -140 2161 101 0 0 chr15 36648811 36649099 -64731422 + AluSg SINE Alu 6 293 -17 879 128 13 159 chr15 36649099 36649276 -64731245 + MER51B-int LTR ERV1 7676 7815 -1 1709 120 31 4 chr15 36649278 36649536 -64730985 + MER51B LTR ERV1 1 265 -112 1936 148 7 0 chr15 36649536 36649841 -64730680 - AluSx SINE Alu 0 312 6 2329 87 0 3 chr15 36649845 36650154 -64730367 - AluY SINE Alu -3 308 1 966 211 0 0 chr15 36650154 36650329 -64730192 - AluSg/x SINE Alu -16 296 122 389 200 29 0 chr15 36650329 36650399 -64730122 - AluJ/FLAM SINE Alu -230 72 1 1874 113 0 39 chr15 36651614 36651925 -64728596 - AluY SINE Alu -12 299 1 809 148 39 8 chr15 36652229 36652357 -64728164 + FRAM SINE Alu 34 165 -11 2135 111 13 0 chr15 36652631 36652937 -64727584 - AluSg SINE Alu 0 310 1 1488 21 0 2 chr15 36653577 36653782 -64726739 + (CTGTG)n Simple_repeat Simple_repeat 1 385 0 874 193 14 11 chr15 36654039 36654312 -64726209 + CT-rich Low_complexity Low_complexity 1 273 0 2112 114 10 0 chr15 36654728 36655027 -64725494 + AluSg SINE Alu 1 302 -8 1999 122 7 3 chr15 36655036 36655332 -64725189 + AluSx SINE Alu 1 297 -15 1699 99 13 0 chr15 36656832 36657065 -64723456 - AluSq SINE Alu -19 294 59 2125 119 0 0 chr15 36657263 36657558 -64722963 + AluSx SINE Alu 2 296 -16 1687 191 0 16 chr15 36659114 36659428 -64721093 - AluJb SINE Alu -3 309 1 880 117 45 39 chr15 36660387 36660541 -64719980 - AluSp SINE Alu -122 191 37 2487 119 27 9 chr15 36660541 36661073 -64719448 - MER61-int LTR ERV1 -1203 6334 5747 1998 111 0 77 chr15 36661074 36661399 -64719122 + AluSx SINE Alu 1 300 -12 319 103 184 92 chr15 36661399 36661486 -64719035 - MER61-int LTR ERV1 -2194 5343 5249 * 2115 107 30 9 chr15 36661485 36661875 -64718646 - MER61-int LTR ERV1 -1626 4320 2211 1973 162 0 0 chr15 36661943 36662240 -64718281 - AluSx SINE Alu -13 299 3 2087 139 3 0 chr15 36662252 36662546 -64717975 - AluSx SINE Alu -17 295 1 1354 181 8 39 chr15 36662856 36663115 -64717406 - AluJo SINE Alu -25 287 37 261 252 96 7 chr15 36663762 36663897 -64716624 + MER112 DNA MER1_type 29 175 -85 333 0 0 0 chr15 36663939 36663976 -64716545 + (TG)n Simple_repeat Simple_repeat 2 38 0 2117 90 23 30 chr15 36664006 36664307 -64716214 + AluSx SINE Alu 2 300 -12 2381 89 0 3 chr15 36664639 36664943 -64715578 + AluSg SINE Alu 1 303 -7 2077 145 0 3 chr15 36665662 36665965 -64714556 - AluJb SINE Alu -10 302 1 346 214 48 12 chr15 36665982 36666066 -64714455 - L2 LINE L2 -3 3310 3224 2062 100 10 17 chr15 36666336 36666627 -64713894 + AluSc SINE Alu 1 289 -20 180 0 0 0 chr15 36666903 36666923 -64713598 + (TC)n Simple_repeat Simple_repeat 1 20 0 221 354 70 50 chr15 36667394 36667710 -64712811 + L2 LINE L2 2716 3051 -221 1921 121 0 0 chr15 36667804 36668061 -64712460 + AluSx SINE Alu 1 257 -55 213 94 0 0 chr15 36668091 36668123 -64712398 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1166 256 66 49 chr15 36668123 36668295 -64712226 - L2 LINE L2 -13 3300 3132 2242 104 0 10 chr15 36668295 36668594 -64711927 + AluSg SINE Alu 1 296 -14 1166 256 66 49 chr15 36668594 36669090 -64711431 - L2 LINE L2 -181 3132 2625 212 233 94 138 chr15 36669090 36669178 -64711343 - L2 LINE L2 -989 2325 2246 2267 118 0 3 chr15 36669178 36669491 -64711030 - AluSx SINE Alu 0 312 1 212 233 94 138 chr15 36669491 36669561 -64710960 - L2 LINE L2 -1068 2246 2174 1692 187 0 7 chr15 36669872 36670172 -64710349 + AluJo SINE Alu 1 298 -14 1473 161 23 23 chr15 36670891 36671190 -64709331 + AluSc SINE Alu 1 299 -10 254 211 10 93 chr15 36671520 36671714 -64708807 + T-rich Low_complexity Low_complexity 2 179 0 415 267 8 17 chr15 36671752 36671872 -64708649 + Alu SINE Alu 181 299 -11 937 219 0 0 chr15 36673120 36673284 -64707237 + FRAM SINE Alu 1 164 -2 359 154 0 0 chr15 36673906 36673958 -64706563 + AluSq SINE Alu 140 191 -112 1581 152 10 54 chr15 36674456 36674615 -64705906 - AluSq SINE Alu -21 292 150 1468 155 7 37 chr15 36674615 36674911 -64705610 - AluSx SINE Alu -15 297 11 1581 152 10 54 chr15 36674911 36675048 -64705473 - AluSq SINE Alu -163 150 9 1501 163 0 4 chr15 36675182 36675409 -64705112 - AluSx SINE Alu -84 228 3 1006 132 0 0 chr15 36675410 36675546 -64704975 - AluSq/x SINE Alu -176 136 1 838 171 0 0 chr15 36675548 36675677 -64704844 - AluJb SINE Alu -20 292 164 227 318 0 0 chr15 36675694 36675757 -64704764 + MIR SINE MIR 79 141 -121 295 167 0 0 chr15 36677211 36677259 -64703262 + Alu SINE Alu 1 48 -253 2184 108 7 0 chr15 36677668 36677965 -64702556 + AluSg SINE Alu 1 299 -11 201 384 8 0 chr15 36678091 36678216 -64702305 + L2 LINE L2 2934 3059 -213 1719 155 0 52 chr15 36678346 36678490 -64702031 + AluJo SINE Alu 1 122 -190 2323 92 0 19 chr15 36678490 36678805 -64701716 + AluSc SINE Alu 1 309 0 1719 155 0 52 chr15 36678805 36678970 -64701551 + AluJo SINE Alu 122 294 -18 1892 175 0 0 chr15 36679214 36679517 -64701004 + AluJo SINE Alu 7 309 -3 959 198 16 62 chr15 36679560 36679802 -64700719 + AluJb SINE Alu 1 231 -81 21 0 0 0 chr15 36679912 36679933 -64700588 + AT_rich Low_complexity Low_complexity 1 21 0 2120 73 0 8 chr15 36679971 36680232 -64700289 + AluSg SINE Alu 30 288 -22 2168 113 13 13 chr15 36680243 36680552 -64699969 + AluSp SINE Alu 1 309 -4 2037 131 0 0 chr15 36680739 36681022 -64699499 + AluSx SINE Alu 28 310 -2 784 162 0 22 chr15 36681232 36681368 -64699153 + FLAM_C SINE Alu 1 133 0 2210 133 0 0 chr15 36681454 36681756 -64698765 + AluSx SINE Alu 1 302 -10 1324 140 144 11 chr15 36681930 36682220 -64698301 - MSTA LTR MaLR -91 335 1 248 298 36 12 chr15 36682222 36682306 -64698215 - LTR67 LTR ERVL -44 513 428 207 0 0 0 chr15 36682410 36682433 -64698088 + (TA)n Simple_repeat Simple_repeat 2 24 0 206 269 60 0 chr15 36683440 36683507 -64697014 + MIR SINE MIR 191 261 -1 2180 116 0 0 chr15 36683722 36684015 -64696506 + AluSc SINE Alu 1 293 -16 2178 110 10 0 chr15 36684099 36684399 -64696122 - AluSp SINE Alu -10 303 1 2094 125 0 10 chr15 36684482 36684787 -64695734 + AluSx SINE Alu 1 302 -10 350 320 26 0 chr15 36684806 36684959 -64695562 + L1M4 LINE L1 3289 3445 -2701 2291 116 0 3 chr15 36684967 36685269 -64695252 + AluSx SINE Alu 1 301 -11 2140 118 23 3 chr15 36685312 36685616 -64694905 + AluSx SINE Alu 1 310 -2 1612 181 14 10 chr15 36685702 36685990 -64694531 + AluJo SINE Alu 1 289 -23 899 114 0 0 chr15 36686000 36686114 -64694407 + AluSg/x SINE Alu 173 286 -26 34 42 0 0 chr15 36686114 36686162 -64694359 + AT_rich Low_complexity Low_complexity 1 48 0 2550 197 30 31 chr15 36686438 36686824 -64693697 + L1MB7 LINE L1 5573 5959 -225 2157 101 7 3 chr15 36686824 36687120 -64693401 + AluSx SINE Alu 1 297 -15 2550 197 30 31 chr15 36687120 36687336 -64693185 + L1MB7 LINE L1 5959 6174 -10 2374 96 3 0 chr15 36687453 36687754 -64692767 - AluSx SINE Alu -10 302 1 2300 98 0 10 chr15 36687756 36688061 -64692460 - AluSq SINE Alu -1 312 11 2052 98 79 0 chr15 36688349 36688626 -64691895 - AluSc SINE Alu -10 299 1 1608 184 3 31 chr15 36688766 36689086 -64691435 - AluJo SINE Alu -1 311 1 2161 91 0 42 chr15 36689181 36689489 -64691032 + AluY SINE Alu 1 295 -16 2001 115 28 7 chr15 36690009 36690320 -64690201 - AluSx SINE Alu 0 312 1 2412 71 0 40 chr15 36690387 36690711 -64689810 - AluY SINE Alu 0 311 1 29 0 0 0 chr15 36690781 36690810 -64689711 + AT_rich Low_complexity Low_complexity 1 29 0 402 218 11 0 chr15 36690810 36690897 -64689624 - AluJb SINE Alu -205 107 20 1277 110 0 0 chr15 36691149 36691313 -64689208 - AluSg/x SINE Alu -19 293 130 1842 188 0 6 chr15 36691317 36691631 -64688890 - 7SLRNA srpRNA srpRNA -8 312 1 2046 127 7 7 chr15 36691658 36691958 -64688563 - AluSc SINE Alu -7 302 3 1852 154 6 41 chr15 36691965 36692153 -64688368 - AluJo SINE Alu 0 312 138 2389 45 41 3 chr15 36692153 36692444 -64688077 - AluY SINE Alu -9 302 1 1852 154 6 41 chr15 36692444 36692573 -64687948 - AluJo SINE Alu -174 138 6 539 211 9 0 chr15 36692707 36692816 -64687705 + FLAM_A SINE Alu 21 130 -12 1793 159 3 23 chr15 36692818 36693119 -64687402 + AluJo SINE Alu 1 295 -17 29 0 0 0 chr15 36693166 36693195 -64687326 + AT_rich Low_complexity Low_complexity 1 29 0 2300 148 63 63 chr15 36693200 36693360 -64687161 + MLT1D LTR MaLR 1 160 -345 2492 87 0 0 chr15 36693360 36693671 -64686850 - AluY SINE Alu 0 311 1 2300 148 63 63 chr15 36693671 36694015 -64686506 + MLT1D LTR MaLR 159 505 0 466 243 0 0 chr15 36694500 36694603 -64685918 + FLAM_A SINE Alu 35 137 -5 23 0 0 0 chr15 36695024 36695047 -64685474 + AT_rich Low_complexity Low_complexity 1 23 0 1068 128 7 0 chr15 36695505 36695673 -64684848 - AluSg/x SINE Alu 0 300 132 2396 96 0 0 chr15 36695673 36695975 -64684546 - AluSg SINE Alu -8 302 1 1393 135 0 0 chr15 36695978 36696178 -64684343 - MER51-int LTR ERV1 -150 7666 7467 2231 105 3 6 chr15 36696195 36696508 -64684013 + AluSx SINE Alu 1 312 0 551 158 11 0 chr15 36696547 36696642 -64683879 - LTR54B LTR ERV1 -399 99 4 6414 112 78 43 chr15 36696642 36696971 -64683550 - MER51-int LTR ERV1 -655 6882 6566 2202 123 0 3 chr15 36696971 36697272 -64683249 - AluSg SINE Alu -10 300 1 6414 112 78 43 chr15 36697272 36697417 -64683104 - MER51-int LTR ERV1 -971 6566 6427 1609 109 60 84 chr15 36697417 36697563 -64682958 + AluSp SINE Alu 1 138 -175 2268 80 17 0 chr15 36697563 36697687 -64682834 + AluY SINE Alu 1 121 -190 474 101 0 0 chr15 36697687 36697756 -64682765 + (CA)n Simple_repeat Simple_repeat 2 70 0 2268 80 17 0 chr15 36697756 36697920 -64682601 + AluY SINE Alu 121 294 -17 1609 109 60 84 chr15 36697920 36698057 -64682464 + AluSp SINE Alu 138 277 -36 2101 107 3 17 chr15 36698058 36698356 -64682165 + AluSp SINE Alu 1 294 -19 6414 112 78 43 chr15 36698356 36698444 -64682077 - MER51-int LTR ERV1 -1110 6427 6344 2254 73 0 0 chr15 36698444 36698718 -64681803 - AluSg SINE Alu 0 310 37 6414 112 78 43 chr15 36698718 36699221 -64681300 - MER51-int LTR ERV1 -1193 6344 5776 1913 112 6 78 chr15 36699249 36699570 -64680951 + AluSx SINE Alu 3 300 -12 319 103 184 92 chr15 36699570 36699657 -64680864 - MER51-int LTR ERV1 -2194 5343 5249 * 2052 98 5 6 chr15 36699656 36700047 -64680474 - MER51-int LTR ERV1 -2572 2645 2211 304 244 0 0 chr15 36700174 36700260 -64680261 + C-rich Low_complexity Low_complexity 1 86 0 2034 136 10 0 chr15 36700656 36700964 -64679557 + AluSx SINE Alu 1 311 -1 2694 174 56 14 chr15 36700973 36701489 -64679032 + L1MB5 LINE L1 5585 6122 -52 2209 90 52 0 chr15 36701489 36701778 -64678743 - AluSp SINE Alu -9 304 1 956 198 24 0 chr15 36701790 36701957 -64678564 - AluJo SINE Alu -141 171 1 283 151 0 0 chr15 36701964 36702017 -64678504 + L1MB4 LINE L1 6128 6180 0 1468 184 16 20 chr15 36702055 36702360 -64678161 + AluJo SINE Alu 9 312 0 2339 99 3 0 chr15 36702571 36702873 -64677648 - AluSg SINE Alu -7 303 1 735 177 8 0 chr15 36703640 36703770 -64676751 + AluJo/FLAM SINE Alu 2 132 -180 2064 124 3 23 chr15 36703772 36704071 -64676450 + AluSp SINE Alu 1 293 -20 2105 133 0 7 chr15 36704075 36704375 -64676146 + AluSx SINE Alu 1 298 -14 1678 109 0 133 chr15 36704631 36704969 -64675552 - AluSg SINE Alu -17 293 1 223 222 56 139 chr15 36705531 36705675 -64674846 - MIR SINE MIR -73 189 58 1929 157 10 0 chr15 36706388 36706682 -64673839 + AluJo SINE Alu 1 297 -15 1153 48 0 0 chr15 36706747 36706892 -64673629 - L1PA5 LINE L1 -3 6151 6007 2333 101 3 22 chr15 36706942 36707259 -64673262 - AluSp SINE Alu -2 311 1 201 154 0 0 chr15 36707566 36707605 -64672916 + A-rich Low_complexity Low_complexity 1 39 0 1521 71 0 0 chr15 36707937 36708120 -64672401 + AluSc SINE Alu 1 183 -126 189 0 0 0 chr15 36708160 36708181 -64672340 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 2380 75 3 0 chr15 36708280 36708575 -64671946 - AluY SINE Alu -13 298 3 1804 149 31 3 chr15 36710247 36710535 -64669986 - AluSx SINE Alu -15 297 2 1512 137 6 128 chr15 36710770 36710972 -64669549 - AluSx SINE Alu -1 301 157 2170 107 0 0 chr15 36710972 36711253 -64669268 - AluY SINE Alu -30 281 1 1512 137 6 128 chr15 36711253 36711393 -64669128 - AluSx SINE Alu -145 157 1 1901 162 0 0 chr15 36711522 36711806 -64668715 - AluSx SINE Alu -26 286 3 2212 112 3 0 chr15 36711818 36712113 -64668408 - AluSq SINE Alu -17 296 1 2215 92 13 29 chr15 36712123 36712437 -64668084 - AluSp SINE Alu -4 309 1 2091 143 55 10 chr15 36712443 36712843 -64667678 - MER41-int LTR ERV1 -2344 4652 2820 * 4885 105 133 1 chr15 36712815 36713641 -64666880 - MER41-int LTR ERV1 -4489 3327 2393 4940 98 6 20 chr15 36713642 36714226 -64666295 + LTR8 LTR ERV1 1 575 -116 2294 91 3 3 chr15 36714226 36714523 -64665998 + AluSg SINE Alu 5 301 -9 4940 98 6 20 chr15 36714523 36714631 -64665890 + LTR8 LTR ERV1 575 683 -8 4478 138 50 31 chr15 36714633 36715980 -64664541 + pTR5 LTR ERV1 741 2437 -1 700 106 139 0 chr15 36715992 36716143 -64664378 - MER41-int LTR ERV1 -5421 2395 2224 * 728 95 135 7 chr15 36716127 36716275 -64664246 - MER41-int LTR ERV1 -5697 2119 1953 1137 106 0 0 chr15 36716297 36716438 -64664083 - AluSg/x SINE Alu -27 285 145 989 186 14 59 chr15 36716552 36716773 -64663748 - AluJo SINE Alu -15 297 87 1491 140 132 4 chr15 36716929 36717179 -64663342 - AluJb SINE Alu -30 282 1 2209 102 3 3 chr15 36717280 36717574 -64662947 + AluSx SINE Alu 1 294 -18 1507 132 52 0 chr15 36717576 36717826 -64662695 + AluSg SINE Alu 1 263 -47 212 233 94 138 chr15 36718359 36718429 -64662092 + L2 LINE L2 2174 2246 -1068 2267 118 0 3 chr15 36718429 36718742 -64661779 + AluSx SINE Alu 1 312 0 212 233 94 138 chr15 36718742 36718830 -64661691 + L2 LINE L2 2246 2325 -989 1166 256 66 49 chr15 36718830 36719326 -64661195 + L2 LINE L2 2625 3132 -181 2242 104 0 10 chr15 36719326 36719625 -64660896 - AluSg SINE Alu -14 296 1 1166 256 66 49 chr15 36719625 36719797 -64660724 + L2 LINE L2 3132 3300 -13 213 94 0 0 chr15 36719797 36719829 -64660692 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 1816 140 0 0 chr15 36719859 36720116 -64660405 - AluSx SINE Alu -55 257 1 221 354 70 50 chr15 36720210 36720526 -64659995 - L2 LINE L2 -221 3051 2716 180 0 0 0 chr15 36720997 36721017 -64659504 + (GA)n Simple_repeat Simple_repeat 1 20 0 2062 100 10 17 chr15 36721293 36721584 -64658937 - AluSc SINE Alu -20 289 1 333 226 48 12 chr15 36721854 36721938 -64658583 + L2 LINE L2 3224 3310 -3 2077 145 0 3 chr15 36721955 36722258 -64658263 + AluJb SINE Alu 1 302 -10 2381 89 0 3 chr15 36722977 36723281 -64657240 - AluSg SINE Alu -7 303 1 2117 90 23 30 chr15 36723613 36723914 -64656607 - AluSx SINE Alu -12 300 2 333 0 0 0 chr15 36723944 36723981 -64656540 + (CA)n Simple_repeat Simple_repeat 2 38 0 261 252 96 7 chr15 36724023 36724158 -64656363 - MER112 DNA MER1_type -85 175 29 1372 178 8 39 chr15 36724805 36725064 -64655457 + AluJo SINE Alu 37 287 -25 1960 143 3 37 chr15 36725374 36725695 -64654826 + AluJb SINE Alu 1 310 -2 229 196 20 0 chr15 36726348 36726399 -64654122 + L2 LINE L2 3220 3271 -1 376 226 61 9 chr15 36727575 36727690 -64652831 + L1ME4a LINE L1 5582 5702 -419 2341 84 0 50 chr15 36727783 36728105 -64652416 + AluY SINE Alu 1 306 -5 446 216 221 11 chr15 36728107 36728279 -64652242 + L1ME4a LINE L1 5823 6040 -81 2463 84 3 0 chr15 36728279 36728588 -64651933 - AluSx SINE Alu 0 312 3 446 216 221 11 chr15 36728588 36728605 -64651916 + L1ME4a LINE L1 6040 6052 -69 2040 152 7 0 chr15 36729873 36730182 -64650339 + AluSx SINE Alu 1 311 -1 180 0 0 0 chr15 36730920 36730940 -64649581 + (A)n Simple_repeat Simple_repeat 1 20 0 2232 119 3 0 chr15 36732132 36732443 -64648078 - AluSx SINE Alu 0 312 1 1838 159 14 3 chr15 36732854 36733150 -64647371 + AluJb SINE Alu 1 299 -13 1895 129 102 3 chr15 36733150 36733183 -64647338 + L1MA9 LINE L1 5756 5784 -528 285 29 0 0 chr15 36733183 36733217 -64647304 + (CA)n Simple_repeat Simple_repeat 2 35 0 1895 129 102 3 chr15 36733217 36733525 -64646996 + L1MA9 LINE L1 5784 6131 -181 377 138 0 0 chr15 36733527 36733592 -64646929 + L1MA9 LINE L1 6242 6306 -6 312 288 150 7 chr15 36733697 36733795 -64646726 + MER5A DNA MER1_type 14 97 -92 2053 138 7 0 chr15 36733795 36734093 -64646428 - AluSx SINE Alu -11 301 2 312 288 150 7 chr15 36734093 36734147 -64646374 + MER5A DNA MER1_type 97 188 -1 3112 14 0 3 chr15 36734194 36734548 -64645973 - L1PA3 LINE L1 0 6155 5803 1706 168 16 40 chr15 36734558 36734862 -64645659 - AluJo SINE Alu -15 297 1 303 245 64 11 chr15 36735165 36735259 -64645262 - MIR SINE MIR -14 248 150 27 29 0 0 chr15 36735359 36735393 -64645128 + AT_rich Low_complexity Low_complexity 1 34 0 385 226 218 24 chr15 36735410 36735534 -64644987 - MIR SINE MIR -99 163 16 379 164 0 0 chr15 36736559 36736620 -64643901 - MER50 LTR ERV1 -177 557 497 2218 99 17 0 chr15 36737249 36737542 -64642979 + AluSx SINE Alu 1 298 -14 306 67 0 0 chr15 36738038 36738083 -64642438 + (CAA)n Simple_repeat Simple_repeat 2 46 0 816 229 11 6 chr15 36740182 36740357 -64640164 + MER5B DNA MER1_type 2 177 -1 2048 138 6 34 chr15 36740618 36740938 -64639583 + AluSx SINE Alu 1 311 -1 1592 173 11 18 chr15 36741658 36741930 -64638591 - AluJb SINE Alu -13 299 30 21 0 0 0 chr15 36743874 36743895 -64636626 + AT_rich Low_complexity Low_complexity 1 21 0 2500 62 0 0 chr15 36744904 36745195 -64635326 + AluY SINE Alu 1 291 -20 602 164 224 0 chr15 36747015 36747131 -64633390 + MER46A DNA MER2_type 1 142 -94 185 276 81 11 chr15 36747411 36747498 -64633023 + MER5A DNA MER1_type 97 189 0 1980 138 10 16 chr15 36747785 36748097 -64632424 + AluSx SINE Alu 1 310 -2 2376 101 0 0 chr15 36748460 36748757 -64631764 + AluSx SINE Alu 7 303 -9 32 26 0 0 chr15 36748838 36748877 -64631644 + AT_rich Low_complexity Low_complexity 1 39 0 2071 143 0 0 chr15 36750401 36750701 -64629820 + AluSx SINE Alu 1 300 -12 1948 162 0 16 chr15 36751239 36751553 -64628968 + AluJb SINE Alu 1 309 -3 2226 119 0 0 chr15 36753109 36753404 -64627117 - AluSx SINE Alu -16 296 2 1776 99 13 0 chr15 36753602 36753835 -64626686 + AluSq SINE Alu 59 294 -19 2093 122 7 3 chr15 36755336 36755632 -64624889 - AluSx SINE Alu -15 297 1 2215 112 10 0 chr15 36755644 36755940 -64624581 - AluSg SINE Alu -11 299 1 186 258 52 0 chr15 36756356 36756453 -64624068 + GA-rich Low_complexity Low_complexity 2 103 0 * 935 118 11 22 chr15 36756450 36756628 -64623893 + (GGGA)n Simple_repeat Simple_repeat 2 177 0 1372 22 0 13 chr15 36756884 36757107 -64623414 + (CACAG)n Simple_repeat Simple_repeat 1 220 0 2230 108 13 0 chr15 36757747 36758053 -64622468 + AluSg SINE Alu 1 310 0 801 148 39 8 chr15 36758327 36758455 -64622066 - FRAM SINE Alu -11 165 34 2192 77 0 42 chr15 36758759 36759071 -64621450 + AluY SINE Alu 1 299 -12 386 200 29 0 chr15 36760286 36760356 -64620165 + AluJ/FLAM SINE Alu 1 72 -230 999 211 0 0 chr15 36760356 36760531 -64619990 + AluSg/x SINE Alu 122 296 -16 2439 87 0 3 chr15 36760531 36760840 -64619681 + AluY SINE Alu 1 308 -3 2011 135 0 13 chr15 36760844 36760962 -64619559 + AluSx SINE Alu 6 124 -188 216 0 0 0 chr15 36760962 36760986 -64619535 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2011 135 0 13 chr15 36760986 36761178 -64619343 + AluSx SINE Alu 124 312 0 520 220 9 18 chr15 36761184 36761293 -64619228 + MLT1F LTR MaLR 418 525 -17 1902 121 0 69 chr15 36761792 36762121 -64618400 + AluSx SINE Alu 1 308 0 1931 140 18 0 chr15 36762223 36762508 -64618013 + AluSx SINE Alu 1 290 -22 22 0 0 0 chr15 36762508 36762530 -64617991 + AT_rich Low_complexity Low_complexity 1 22 0 2237 110 0 0 chr15 36762657 36762948 -64617573 + AluSx SINE Alu 1 291 -21 2149 113 20 3 chr15 36763003 36763305 -64617216 - AluSx SINE Alu -4 308 2 722 167 8 25 chr15 36764155 36764275 -64616246 - FLAM_C SINE Alu -24 119 2 736 213 0 14 chr15 36765058 36765199 -64615322 + FLAM_C SINE Alu 1 139 -4 795 266 73 15 chr15 36765211 36765485 -64615036 + L1ME LINE L1 4625 4914 -1232 595 171 29 0 chr15 36765588 36765693 -64614828 + FLAM_C SINE Alu 2 109 -34 403 169 0 56 chr15 36765716 36765787 -64614734 + AluJ/FRAM SINE Alu 226 292 -20 586 260 64 4 chr15 36765846 36766081 -64614440 + L1ME LINE L1 5265 5513 -651 1568 147 0 95 chr15 36766081 36766387 -64614134 - AluJb SINE Alu -35 277 1 2338 102 0 9 chr15 36766425 36766740 -64613781 - AluSq SINE Alu -1 312 1 1837 158 0 32 chr15 36766826 36766999 -64613522 - AluJb SINE Alu -6 306 146 2015 127 10 23 chr15 36766999 36767307 -64613214 - AluSx SINE Alu -4 308 5 1837 158 0 32 chr15 36767307 36767449 -64613072 - AluJb SINE Alu -166 146 1 2165 107 0 0 chr15 36767481 36767771 -64612750 - AluSx SINE Alu -22 290 1 397 284 60 8 chr15 36768718 36768852 -64611669 + L2 LINE L2 2720 2860 -454 2321 226 39 90 chr15 36768878 36769697 -64610824 + L1ME3 LINE L1 5367 6143 -19 2050 125 24 0 chr15 36770306 36770601 -64609920 + AluSx SINE Alu 2 303 -9 1948 135 0 26 chr15 36770609 36770913 -64609608 + AluSx SINE Alu 1 296 -16 297 100 0 0 chr15 36771146 36771196 -64609325 + (TG)n Simple_repeat Simple_repeat 2 51 0 1817 134 15 0 chr15 36771216 36771485 -64609036 - AluSx SINE Alu -39 273 1 2121 141 0 0 chr15 36771571 36771875 -64608646 - AluSx SINE Alu -6 306 3 2084 89 9 92 chr15 36771897 36772224 -64608297 - AluSp SINE Alu -13 300 1 194 333 0 14 chr15 36773680 36773752 -64606769 + MER5B DNA MER1_type 4 74 -104 374 336 30 8 chr15 36774035 36774169 -64606352 - L3 LINE CR1 -18 1559 1423 1800 129 34 24 chr15 36774573 36774867 -64605654 + AluSx SINE Alu 1 297 -15 2299 91 10 0 chr15 36775812 36776108 -64604413 + AluSg SINE Alu 1 299 -11 235 392 8 0 chr15 36776234 36776359 -64604162 + L2 LINE L2 2934 3059 -213 1704 155 0 52 chr15 36776489 36776633 -64603888 + AluJo SINE Alu 1 122 -190 2307 92 0 19 chr15 36776633 36776948 -64603573 + AluSc SINE Alu 1 309 0 1704 155 0 52 chr15 36776948 36777113 -64603408 + AluJo SINE Alu 122 294 -18 1880 175 0 0 chr15 36777357 36777660 -64602861 + AluJo SINE Alu 7 309 -3 631 208 132 108 chr15 36777669 36777703 -64602818 + L1MC5 LINE L1 7480 7512 -449 1464 190 13 39 chr15 36777703 36778008 -64602513 + AluJb SINE Alu 1 297 -15 631 208 132 108 chr15 36778008 36778074 -64602447 + L1MC5 LINE L1 7512 7575 -386 2384 86 0 0 chr15 36778074 36778365 -64602156 - AluY SINE Alu -20 291 1 631 208 132 108 chr15 36778365 36778687 -64601834 + L1MC5 LINE L1 7575 7913 -48 2082 128 3 0 chr15 36779608 36779898 -64600623 - AluSx SINE Alu -21 291 1 846 229 37 16 chr15 36780689 36780877 -64599644 + MER58A DNA MER1_type 2 193 -31 1651 198 3 13 chr15 36780892 36781206 -64599315 - AluJb SINE Alu -1 311 1 1562 132 73 38 chr15 36782151 36782438 -64598083 + AluJb SINE Alu 2 298 -14 2352 90 0 0 chr15 36782488 36782788 -64597733 + AluSq SINE Alu 14 313 0 781 136 8 30 chr15 36783344 36783476 -64597045 + FLAM_C SINE Alu 5 133 0 366 23 0 0 chr15 36783512 36783555 -64596966 + (TG)n Simple_repeat Simple_repeat 2 44 0 1757 169 41 0 chr15 36783907 36784082 -64596439 - AluJb SINE Alu -5 307 114 189 0 0 0 chr15 36784082 36784103 -64596418 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 1757 169 41 0 chr15 36784103 36784222 -64596299 - AluJb SINE Alu -198 114 1 1861 106 3 94 chr15 36784303 36784623 -64595898 + AluJb SINE Alu 1 291 -21 1774 86 126 11 chr15 36785267 36785536 -64594985 + AluSg1 SINE Alu 1 300 -9 25 0 0 0 chr15 36785951 36785976 -64594545 + AT_rich Low_complexity Low_complexity 1 25 0 1813 166 24 0 chr15 36785985 36786280 -64594241 + AluJb SINE Alu 1 302 -10 1993 121 0 56 chr15 36786285 36786607 -64593914 + AluSg SINE Alu 1 304 -6 550 266 23 22 chr15 36786619 36786870 -64593651 + L1ME LINE L1 769 1304 -4697 27 0 0 0 chr15 36787204 36787231 -64593290 + AT_rich Low_complexity Low_complexity 1 27 0 556 141 0 3 chr15 36787280 36787521 -64593000 + AluSx SINE Alu 1 310 -2 978 246 108 38 chr15 36787532 36787873 -64592648 + MLT1A1 LTR MaLR 1 365 0 255 111 74 19 chr15 36787943 36787997 -64592524 + MER4D LTR ERV1 777 833 -70 2136 129 0 28 chr15 36788019 36788336 -64592185 + AluSx SINE Alu 5 312 0 2221 84 21 0 chr15 36788452 36788739 -64591782 + AluSx SINE Alu 1 293 -19 1143 258 115 8 chr15 36788852 36789332 -64591189 + L1ME LINE L1 2269 2799 -3281 770 132 0 35 chr15 36789342 36789456 -64591065 - FRAM SINE Alu -18 158 49 553 256 66 5 chr15 36789459 36789670 -64590851 + L1ME LINE L1 2803 3026 -3054 1737 175 0 7 chr15 36789675 36789967 -64590554 + AluSx SINE Alu 1 290 -22 301 211 14 0 chr15 36790044 36790115 -64590406 - MER58 DNA MER1_type -2307 113 42 2276 107 10 0 chr15 36790116 36790424 -64590097 + AluSx SINE Alu 1 311 -1 2719 174 56 14 chr15 36790433 36790949 -64589572 + L1MB5 LINE L1 5585 6122 -52 2189 90 52 0 chr15 36790949 36791238 -64589283 - AluSp SINE Alu -9 304 1 934 204 24 0 chr15 36791250 36791417 -64589104 - AluJb SINE Alu -141 171 1 291 151 0 0 chr15 36791424 36791477 -64589044 + L1MB4 LINE L1 6128 6180 0 1462 184 16 20 chr15 36791515 36791820 -64588701 + AluJo SINE Alu 9 312 0 2320 99 3 0 chr15 36792032 36792334 -64588187 - AluSg SINE Alu -7 303 1 785 177 8 0 chr15 36793101 36793231 -64587290 + AluJo/FLAM SINE Alu 2 132 -180 2050 124 3 23 chr15 36793233 36793532 -64586989 + AluSp SINE Alu 1 293 -20 2094 133 0 7 chr15 36793536 36793836 -64586685 + AluSx SINE Alu 1 298 -14 1654 112 0 133 chr15 36794092 36794430 -64586091 - AluSg SINE Alu -17 293 1 293 281 47 99 chr15 36794992 36795184 -64585337 - MIR SINE MIR -73 189 8 1906 157 10 0 chr15 36795850 36796144 -64584377 + AluJo SINE Alu 1 297 -15 1260 35 0 0 chr15 36796209 36796354 -64584167 - L1PA5 LINE L1 -3 6151 6007 2318 101 3 22 chr15 36796404 36796721 -64583800 - AluSp SINE Alu -2 311 1 201 154 0 0 chr15 36797028 36797067 -64583454 + A-rich Low_complexity Low_complexity 1 39 0 1504 71 0 0 chr15 36797399 36797582 -64582939 + AluSc SINE Alu 1 183 -126 189 0 0 0 chr15 36797622 36797643 -64582878 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 2356 75 3 0 chr15 36797742 36798037 -64582484 - AluY SINE Alu -13 298 3 1787 149 31 3 chr15 36799708 36799996 -64580525 - AluSx SINE Alu -15 297 2 1444 144 26 139 chr15 36800231 36800437 -64580084 - AluYb8 SINE Alu -1 307 154 2151 101 0 0 chr15 36800437 36800714 -64579807 - AluY SINE Alu -34 277 1 1444 144 26 139 chr15 36800714 36800853 -64579668 - AluYb8 SINE Alu -154 154 1 2056 125 4 0 chr15 36801039 36801345 -64579176 + AluSx SINE Alu 1 307 0 1320 190 0 0 chr15 36801472 36801693 -64578828 + AluJo SINE Alu 53 273 -39 2302 102 0 0 chr15 36801863 36802167 -64578354 - AluY SINE Alu -7 304 1 1438 222 17 10 chr15 36802524 36802817 -64577704 - AluJb SINE Alu -17 295 1 2381 82 3 0 chr15 36802864 36803158 -64577363 - AluSg SINE Alu -15 295 1 2136 120 17 3 chr15 36803819 36804119 -64576402 + AluSq SINE Alu 1 304 -9 555 191 0 9 chr15 36804453 36804558 -64575963 + FLAM_C SINE Alu 40 143 0 365 244 98 16 chr15 36805207 36805330 -64575191 - MIR SINE MIR -61 201 69 2133 101 27 3 chr15 36805534 36805832 -64574689 + AluSx SINE Alu 1 305 -7 2286 115 0 0 chr15 36806928 36807232 -64573289 + AluSq SINE Alu 1 304 -9 1637 174 0 60 chr15 36807242 36807379 -64573142 + AluJb SINE Alu 1 145 -167 2278 89 7 17 chr15 36807379 36807681 -64572840 + AluSq SINE Alu 1 299 -14 1637 174 0 60 chr15 36807681 36807859 -64572662 + AluJb SINE Alu 145 297 -15 2159 88 27 10 chr15 36807961 36808257 -64572264 + AluY SINE Alu 1 301 -10 306 194 112 20 chr15 36808269 36808367 -64572154 + L1MC4a LINE L1 7197 7303 -505 1946 145 3 26 chr15 36808384 36808694 -64571827 + AluSx SINE Alu 1 303 -9 304 317 49 32 chr15 36808813 36808936 -64571585 - L1 LINE L1 -1317 4829 4705 266 270 0 0 chr15 36809084 36809158 -64571363 + L1MC4 LINE L1 7940 8013 -29 1977 151 3 0 chr15 36809238 36809543 -64570978 + AluSx SINE Alu 1 306 -6 34 42 0 0 chr15 36809676 36809724 -64570797 + AT_rich Low_complexity Low_complexity 1 48 0 1481 197 11 0 chr15 36809733 36809997 -64570524 - AluJb SINE Alu -45 267 1 1136 110 0 0 chr15 36810819 36810973 -64569548 - AluSg/x SINE Alu -11 299 146 2391 96 0 0 chr15 36811329 36811630 -64568891 + AluSx SINE Alu 1 301 -11 2033 151 20 23 chr15 36812029 36812373 -64568148 - MER2 DNA MER2_type -1 343 1 1982 106 3 53 chr15 36813043 36813365 -64567156 - AluSc SINE Alu -3 306 1 236 250 0 0 chr15 36813778 36813842 -64566679 + L1ME3 LINE L1 6099 6162 0 1854 150 16 3 chr15 36813867 36814174 -64566347 + AluSq SINE Alu 1 311 -2 1939 118 30 0 chr15 36814430 36814727 -64565794 + AluSp SINE Alu 1 306 -7 2521 197 30 31 chr15 36814868 36815254 -64565267 + L1MB7 LINE L1 5573 5959 -225 2048 98 7 3 chr15 36815254 36815550 -64564971 + AluSx SINE Alu 1 297 -15 2521 197 30 31 chr15 36815550 36815766 -64564755 + L1MB7 LINE L1 5959 6174 -10 2240 96 3 0 chr15 36815883 36816185 -64564336 - AluSx SINE Alu -9 303 1 970 113 0 0 chr15 36816188 36816321 -64564200 - AluSq/x SINE Alu -179 133 1 1640 94 17 0 chr15 36816331 36816564 -64563957 - L1PA10 LINE L1 -10 6158 5922 2305 80 3 0 chr15 36816612 36816913 -64563608 - AluSc SINE Alu -7 302 1 1668 228 6 51 chr15 36817516 36817736 -64562785 + L1MB7 LINE L1 5717 5945 -239 1439 176 81 3 chr15 36817736 36818020 -64562501 + AluJo SINE Alu 1 306 -6 1668 228 6 51 chr15 36818020 36818106 -64562415 + L1MB7 LINE L1 5945 6033 -151 2233 97 0 0 chr15 36818106 36818406 -64562115 + AluSg SINE Alu 1 300 -10 1668 228 6 51 chr15 36818406 36818543 -64561978 + L1MB7 LINE L1 6033 6141 -43 1590 158 65 0 chr15 36818543 36818835 -64561686 + AluJb SINE Alu 1 311 -1 1668 228 6 51 chr15 36818835 36818862 -64561659 + L1MB7 LINE L1 6141 6168 -16 608 312 92 25 chr15 36819072 36819427 -64561094 + L2 LINE L2 2668 3046 -267 319 250 157 36 chr15 36819431 36819571 -64560950 + L2 LINE L2 3156 3312 -1 1695 127 62 42 chr15 36819715 36820018 -64560503 + MER46B DNA MER2_type 1 188 -2543 2192 102 0 7 chr15 36820018 36820313 -64560208 + AluSq SINE Alu 1 293 -20 1695 127 62 42 chr15 36820313 36820363 -64560158 + MER46B DNA MER2_type 188 236 0 340 80 0 0 chr15 36822050 36822100 -64558421 - AluSq SINE Alu -1 300 251 1634 82 0 0 chr15 36822100 36822307 -64558214 - AluSq SINE Alu -106 207 1 1816 117 62 4 chr15 36822461 36822735 -64557786 - AluSq SINE Alu -23 290 1 1248 111 0 0 chr15 36822748 36822940 -64557581 + AluSq SINE Alu 117 308 0 1056 76 0 0 chr15 36822979 36823111 -64557410 - AluY SINE Alu -179 132 1 314 242 158 0 chr15 36823194 36823359 -64557162 + L1MB7 LINE L1 5019 5209 -937 1336 198 58 4 chr15 36823359 36823637 -64556884 + AluJb SINE Alu 6 298 -14 611 165 78 121 chr15 36823639 36823925 -64556596 + L1MB7 LINE L1 5199 5484 -700 1837 161 26 0 chr15 36823925 36824229 -64556292 + AluJo SINE Alu 1 312 0 319 206 0 135 chr15 36824290 36824416 -64556105 + L1MB7 LINE L1 6049 6157 -27 1556 178 14 3 chr15 36824461 36824754 -64555767 + AluJo SINE Alu 1 296 -16 2261 71 17 0 chr15 36825040 36825336 -64555185 - AluY SINE Alu -10 301 1 703 107 62 0 chr15 36825671 36825783 -64554738 - L1MB3 LINE L1 0 6183 6065 2006 131 3 3 chr15 36825786 36826091 -64554430 - AluSx SINE Alu -7 305 1 886 186 76 107 chr15 36826472 36826514 -64554007 + MER20B DNA MER1_type 437 479 -304 2381 50 3 7 chr15 36826514 36826812 -64553709 - AluY SINE Alu -14 297 1 886 186 76 107 chr15 36826812 36826875 -64553646 + MER20B DNA MER1_type 479 542 -241 2013 125 0 3 chr15 36826875 36827163 -64553358 + AluSg SINE Alu 4 290 -20 886 186 76 107 chr15 36827163 36827348 -64553173 + MER20B DNA MER1_type 542 718 -65 1991 98 10 14 chr15 36827348 36827645 -64552876 + AluSx SINE Alu 1 296 -16 886 186 76 107 chr15 36827645 36827707 -64552814 + MER20B DNA MER1_type 718 780 -3 2099 112 0 3 chr15 36828350 36828653 -64551868 - AluSx SINE Alu -10 302 1 2019 91 50 17 chr15 36828897 36829194 -64551327 + AluSp SINE Alu 2 308 -5 2056 124 3 10 chr15 36829496 36829802 -64550719 - AluSx SINE Alu -8 304 1 528 257 140 23 chr15 36830352 36830523 -64549998 - MIR SINE MIR -44 218 28 1730 137 44 31 chr15 36830617 36830938 -64549583 - L1MC3 LINE L1 -745 7040 6716 828 133 7 7 chr15 36830938 36831073 -64549448 + AluJo SINE Alu 1 135 -177 1618 183 33 0 chr15 36831074 36831374 -64549147 + AluJo SINE Alu 1 310 -2 818 129 48 48 chr15 36831460 36831607 -64548914 + AluJb SINE Alu 152 298 -14 2607 156 98 98 chr15 36831607 36832197 -64548324 - L1MC3 LINE L1 -1059 6726 6137 1538 136 4 55 chr15 36832197 36832470 -64548051 + AluSx SINE Alu 30 288 -24 1940 138 0 0 chr15 36832480 36832782 -64547739 + AluSx SINE Alu 1 302 0 2083 116 0 0 chr15 36832782 36833076 -64547445 + AluSg SINE Alu 1 294 -16 2607 156 98 98 chr15 36833076 36833157 -64547364 - L1MC3 LINE L1 -1655 6130 6042 2397 61 0 10 chr15 36833270 36833582 -64546939 + AluY SINE Alu 1 309 -2 330 265 78 10 chr15 36833666 36833768 -64546753 - MIR SINE MIR 0 262 154 1957 109 21 0 chr15 36834134 36834417 -64546104 + AluSx SINE Alu 1 289 -23 1999 97 10 42 chr15 36834469 36834613 -64545908 + AluSq SINE Alu 1 148 -165 2244 102 0 0 chr15 36834613 36834908 -64545613 + AluSx SINE Alu 2 296 -16 1999 97 10 42 chr15 36834908 36835074 -64545447 + AluSq SINE Alu 148 301 -12 2024 114 0 10 chr15 36835111 36835408 -64545113 - AluSc SINE Alu -15 294 1 1682 154 33 0 chr15 36835410 36835683 -64544838 - AluJb SINE Alu -20 292 11 2105 110 3 0 chr15 36836126 36836418 -64544103 + AluSx SINE Alu 1 293 -19 2207 90 7 0 chr15 36836492 36836780 -64543741 + AluSq SINE Alu 8 297 -16 1342 188 19 8 chr15 36836898 36837164 -64543357 - AluJb SINE Alu -43 269 1 238 294 245 7 chr15 36837218 36837361 -64543160 + MIR SINE MIR 56 232 -30 2294 88 0 3 chr15 36837469 36837776 -64542745 + AluSc SINE Alu 1 306 -3 1705 153 14 7 chr15 36837878 36838172 -64542349 - AluJb SINE Alu -11 301 6 2138 69 7 14 chr15 36838222 36838530 -64541991 - AluSq SINE Alu 0 306 1 727 149 149 0 chr15 36838577 36838718 -64541803 - FRAM SINE Alu -14 162 1 2342 77 0 0 chr15 36838949 36839249 -64541272 + AluSg SINE Alu 1 300 -10 1268 199 107 44 chr15 36839353 36839389 -64541132 + L1MB7 LINE L1 5790 5822 -362 2206 94 0 0 chr15 36839389 36839688 -64540833 + AluSx SINE Alu 1 299 -13 1268 199 107 44 chr15 36839688 36840017 -64540504 + L1MB7 LINE L1 5822 6178 -6 28 91 0 0 chr15 36840937 36841014 -64539507 + GC_rich Low_complexity Low_complexity 1 77 0 215 160 20 0 chr15 36841116 36841166 -64539355 + (CGG)n Simple_repeat Simple_repeat 2 52 0 290 128 0 124 chr15 36842028 36842111 -64538410 - FLAM SINE Alu -22 111 50 322 188 0 94 chr15 36842111 36842196 -64538325 + FLAM SINE Alu 54 130 -3 200 311 98 41 chr15 36842299 36842421 -64538100 + L2 LINE L2 1801 1929 -1385 2201 82 6 25 chr15 36842444 36842759 -64537762 + AluSq SINE Alu 5 313 0 1927 97 7 55 chr15 36842777 36843085 -64537436 + AluSx SINE Alu 1 293 -19 2060 89 14 10 chr15 36843112 36843404 -64537117 + AluSg SINE Alu 1 293 -17 363 203 81 0 chr15 36843430 36843504 -64537017 - MER2 DNA MER2_type -1 344 265 567 242 8 8 chr15 36843504 36843636 -64536885 + FLAM_C SINE Alu 2 133 -10 736 101 42 0 chr15 36843657 36843776 -64536745 - MER2 DNA MER2_type -139 206 83 2155 51 0 11 chr15 36843780 36844055 -64536466 + AluY SINE Alu 18 289 -22 2714 240 46 32 chr15 36844223 36845057 -64535464 + L1MC4a LINE L1 6857 7701 -107 2316 96 3 0 chr15 36845058 36845370 -64535151 + AluSp SINE Alu 1 313 0 2147 121 0 3 chr15 36845382 36845695 -64534826 + AluSx SINE Alu 1 312 0 2114 109 0 13 chr15 36845789 36846091 -64534430 + AluSx SINE Alu 1 298 -14 2028 109 17 0 chr15 36846571 36846865 -64533656 + AluSp SINE Alu 1 299 -14 1432 215 7 0 chr15 36846873 36847180 -64533341 + AluJo SINE Alu 1 309 -3 1996 134 7 0 chr15 36847184 36847482 -64533039 + AluSx SINE Alu 4 303 -9 647 201 59 0 chr15 36847517 36847686 -64532835 - L1M4 LINE L1 -797 6160 5982 955 163 0 18 chr15 36847699 36847865 -64532656 - AluSp SINE Alu -14 299 137 927 203 49 102 chr15 36847873 36847952 -64532569 - L1M4 LINE L1 -987 5970 5888 1326 172 0 104 chr15 36847952 36848278 -64532243 + AluJb SINE Alu 3 294 -18 927 203 49 102 chr15 36848278 36848523 -64531998 - L1M4 LINE L1 -1069 5888 5663 2315 74 3 0 chr15 36848530 36848829 -64531692 + AluY SINE Alu 1 300 -11 3784 227 80 98 chr15 36848874 36849114 -64531407 - L1M4 LINE L1 -4992 1863 1620 1666 167 44 0 chr15 36849114 36849408 -64531113 - AluJb SINE Alu -5 307 1 3784 227 80 98 chr15 36849408 36849455 -64531066 - L1M4 LINE L1 -5235 1620 1574 2066 111 7 0 chr15 36849455 36849752 -64530769 + AluSx SINE Alu 1 299 -13 3784 227 80 98 chr15 36849752 36850025 -64530496 - L1M4 LINE L1 -5281 1574 1298 1758 174 7 0 chr15 36850025 36850324 -64530197 + AluJb SINE Alu 1 301 -11 3784 227 80 98 chr15 36850324 36850443 -64530078 - L1M4 LINE L1 -5557 1298 1178 1949 118 14 0 chr15 36850443 36850739 -64529782 - AluSx SINE Alu -12 300 1 3784 227 80 98 chr15 36850739 36851742 -64528779 - L1M4 LINE L1 -5677 1178 199 963 140 34 34 chr15 36851742 36851920 -64528601 - Tigger2a DNA MER2_type -256 178 1 454 218 40 0 chr15 36851920 36852021 -64528500 + L1M4 LINE L1 4311 4415 -1731 1187 127 10 63 chr15 36852021 36852072 -64528449 + MSTB LTR MaLR 6 58 -368 2146 98 3 35 chr15 36852072 36852390 -64528131 + AluSg SINE Alu 1 308 -2 1187 127 10 63 chr15 36852390 36852543 -64527978 + MSTB LTR MaLR 58 199 -227 2074 99 3 3 chr15 36852544 36852836 -64527685 + AluSc SINE Alu 1 292 -17 2210 93 3 0 chr15 36852837 36853139 -64527382 + AluSp SINE Alu 1 303 -10 2003 176 61 75 chr15 36853142 36853182 -64527339 + L1MC4 LINE L1 25 64 -8372 1912 130 17 7 chr15 36853182 36853482 -64527039 - AluSx SINE Alu -9 303 1 2003 176 61 75 chr15 36853482 36854113 -64526408 + L1MC4 LINE L1 64 702 -7734 2241 91 0 0 chr15 36854113 36854411 -64526110 - AluSp SINE Alu -13 300 3 2003 176 61 75 chr15 36854411 36854471 -64526050 + L1MC4 LINE L1 702 8055 -381 1106 72 0 0 chr15 36854475 36854614 -64525907 + AluSq/x SINE Alu 1 139 -173 1165 223 51 64 chr15 36854636 36855078 -64525443 + L1MDa LINE L1 278 724 -5816 2148 96 0 3 chr15 36855078 36855371 -64525150 + AluSg SINE Alu 5 296 -14 1165 223 51 64 chr15 36855371 36855750 -64524771 + L1MDa LINE L1 724 1991 -4549 2063 130 0 0 chr15 36855752 36856053 -64524468 + AluSx SINE Alu 1 301 -11 1323 131 0 0 chr15 36856053 36856251 -64524270 + AluSx SINE Alu 29 226 -86 866 146 8 18 chr15 36856251 36856419 -64524102 + LTR7 LTR ERV1 1 218 -232 783 126 40 60 chr15 36856621 36856772 -64523749 + LTR7 LTR ERV1 303 450 0 2050 175 93 24 chr15 36856772 36857235 -64523286 + HERVH LTR ERV1 1 495 -7218 16806 174 20 47 chr15 36857259 36860089 -64520432 + HERVH LTR ERV1 778 3106 -4440 2078 114 0 29 chr15 36860089 36860405 -64520116 + AluY SINE Alu 1 307 -4 16806 174 20 47 chr15 36860405 36861604 -64518917 + HERVH LTR ERV1 3106 4336 -3210 1162 142 5 0 chr15 36861592 36861782 -64518739 + HERVH LTR ERV1 6758 6948 -765 * 3699 88 9 39 chr15 36861833 36862391 -64518130 + HERVH LTR ERV1 7173 7713 0 902 120 8 18 chr15 36862391 36862559 -64517962 + LTR7 LTR ERV1 1 218 -232 980 124 59 0 chr15 36862580 36862733 -64517788 - AluSx SINE Alu -150 162 1 444 271 77 0 chr15 36862765 36862920 -64517601 + L1M4 LINE L1 4420 4586 -1560 2153 123 0 13 chr15 36862920 36863229 -64517292 - AluSx SINE Alu -7 305 1 235 0 0 0 chr15 36863238 36863264 -64517257 + (TTTA)n Simple_repeat Simple_repeat 2 172 0 1632 128 30 8 chr15 36863264 36863491 -64517030 - AluSp SINE Alu -5 308 52 1555 149 8 0 chr15 36863490 36863725 -64516796 + AluSg SINE Alu 64 300 -10 * 25 0 0 0 chr15 36863725 36863750 -64516771 + AT_rich Low_complexity Low_complexity 1 25 0 1998 148 7 0 chr15 36863802 36864129 -64516392 + AluSx SINE Alu 1 312 0 3051 149 33 38 chr15 36864130 36864360 -64516161 + MER41B LTR ERV1 1 231 -404 2425 84 7 0 chr15 36864360 36864668 -64515853 + AluSq SINE Alu 1 310 -3 3051 149 33 38 chr15 36864668 36864988 -64515533 + MER41B LTR ERV1 231 548 -87 332 95 0 48 chr15 36865000 36865063 -64515458 - L1MA3 LINE L1 0 6305 6246 2224 116 0 0 chr15 36865094 36865387 -64515134 + AluSq SINE Alu 5 297 -16 900 106 57 0 chr15 36865473 36865614 -64514907 - L1PB1 LINE L1 -4 6147 5999 1974 134 62 0 chr15 36865617 36865907 -64514614 - AluSx SINE Alu -4 308 1 551 187 9 0 chr15 36865910 36866017 -64514504 + MER41B LTR ERV1 520 627 -8 456 277 0 0 chr15 36866029 36866159 -64514362 + L1M4 LINE L1 4672 4801 -1345 483 108 0 117 chr15 36866160 36866204 -64514317 + LTR8A LTR ERV1 1 49 -678 2124 131 13 0 chr15 36866204 36866510 -64514011 + AluSx SINE Alu 1 310 -2 483 108 0 117 chr15 36866510 36866576 -64513945 + LTR8A LTR ERV1 49 98 -629 * 789 112 8 8 chr15 36866568 36866693 -64513828 + LTR9B LTR ERV1 437 561 -83 1832 102 0 0 chr15 36866744 36866990 -64513531 + AluSg SINE Alu 53 298 -12 2090 125 81 74 chr15 36866991 36867345 -64513176 + LTR8A LTR ERV1 214 564 -163 1818 127 25 7 chr15 36867345 36867620 -64512901 + AluSx SINE Alu 1 280 -32 192 97 0 0 chr15 36867620 36867651 -64512870 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 2090 125 81 74 chr15 36867651 36867742 -64512779 + LTR8A LTR ERV1 563 663 -64 318 85 489 0 chr15 36867797 36867891 -64512630 - L1MB7 LINE L1 -12 6172 6033 192 77 0 0 chr15 36867923 36867949 -64512572 + (A)n Simple_repeat Simple_repeat 1 26 0 499 160 0 0 chr15 36867956 36868031 -64512490 + AluS SINE Alu 2 76 -236 2528 93 55 22 chr15 36868031 36868138 -64512383 - MER51B LTR ERV1 0 377 275 2010 142 10 0 chr15 36868138 36868447 -64512074 + AluSx SINE Alu 1 312 0 2528 93 55 22 chr15 36868447 36868704 -64511817 - MER51B LTR ERV1 -102 275 1 2129 134 3 87 chr15 36868706 36868883 -64511638 - MER51B-int LTR ERV1 -1 7815 7685 2298 102 0 0 chr15 36868883 36869176 -64511345 - AluSg SINE Alu -17 293 1 2129 134 3 87 chr15 36869176 36869379 -64511142 - MER51B-int LTR ERV1 -131 7685 7467 2231 105 3 6 chr15 36869396 36869709 -64510812 + AluSx SINE Alu 1 312 0 551 158 11 0 chr15 36869748 36869843 -64510678 - LTR54B LTR ERV1 -399 99 4 3047 110 53 32 chr15 36869843 36870172 -64510349 - MER51B-int LTR ERV1 -655 6882 6539 2189 126 0 3 chr15 36870172 36870474 -64510047 - AluSg SINE Alu -9 301 1 3047 110 53 32 chr15 36870474 36870616 -64509905 - MER51B-int LTR ERV1 -998 6539 6401 1193 138 5 57 chr15 36870619 36870829 -64509692 + AluSp SINE Alu 1 199 -114 539 48 0 0 chr15 36870829 36870892 -64509629 + AluY SINE Alu 65 127 -184 429 141 0 0 chr15 36870892 36870963 -64509558 + (CA)n Simple_repeat Simple_repeat 1 71 0 1319 79 0 0 chr15 36870963 36871128 -64509393 + AluY SINE Alu 130 294 -17 777 134 127 0 chr15 36871131 36871265 -64509256 + AluSp SINE Alu 127 277 -36 2101 107 3 17 chr15 36871266 36871564 -64508957 + AluSp SINE Alu 1 294 -19 3142 114 18 23 chr15 36871564 36871652 -64508869 - MER51B-int LTR ERV1 -1126 6411 6324 2254 73 0 0 chr15 36871652 36871926 -64508595 - AluSg SINE Alu 0 310 37 3142 114 18 23 chr15 36871926 36872458 -64508063 - MER51B-int LTR ERV1 -1213 6324 5747 1998 111 0 77 chr15 36872459 36872784 -64507737 + AluSx SINE Alu 1 300 -12 319 103 184 92 chr15 36872784 36872871 -64507650 - MER51B-int LTR ERV1 -2194 5343 5249 * 2115 94 5 4 chr15 36872870 36873260 -64507261 - MER41-int LTR ERV1 -2572 2645 2211 2073 160 48 28 chr15 36873239 36873326 -64507195 - MER41-int LTR ERV1 -2774 3172 3088 * 1995 158 0 0 chr15 36873326 36873623 -64506898 - AluSx SINE Alu -13 299 3 2073 160 48 28 chr15 36873623 36873635 -64506886 - MER41-int LTR ERV1 -2858 3088 3078 2212 112 3 0 chr15 36873635 36873930 -64506591 - AluSq SINE Alu -17 296 1 2215 92 13 29 chr15 36873940 36874254 -64506267 - AluSp SINE Alu -4 309 1 2073 160 48 28 chr15 36874254 36874660 -64505861 - MER41-int LTR ERV1 -2876 3070 1474 * 4906 103 133 1 chr15 36874632 36875458 -64505063 - MER41-int LTR ERV1 -4489 3327 2393 4940 98 6 20 chr15 36875459 36876043 -64504478 + LTR8 LTR ERV1 1 575 -116 2294 91 3 3 chr15 36876043 36876340 -64504181 + AluSg SINE Alu 5 301 -9 4940 98 6 20 chr15 36876340 36876448 -64504073 + LTR8 LTR ERV1 575 683 -8 4478 138 50 31 chr15 36876450 36877797 -64502724 + pTR5 LTR ERV1 741 2437 -1 700 106 139 0 chr15 36877809 36877960 -64502561 - MER41-int LTR ERV1 -5421 2395 2224 * 728 95 135 7 chr15 36877944 36878092 -64502429 - MER41-int LTR ERV1 -5697 2119 1953 1137 106 0 0 chr15 36878114 36878255 -64502266 - AluSg/x SINE Alu -27 285 145 989 186 14 59 chr15 36878369 36878590 -64501931 - AluJo SINE Alu -15 297 87 1491 140 132 4 chr15 36878746 36878996 -64501525 - AluJb SINE Alu -30 282 1 2533 64 0 3 chr15 36879097 36879410 -64501111 + AluSq SINE Alu 1 312 -1 2203 94 14 0 chr15 36879780 36880068 -64500453 - AluSc SINE Alu -13 296 5 227 216 0 0 chr15 36880224 36880261 -64500260 + Alu SINE Alu 230 266 -37 34 42 0 0 chr15 36880549 36880597 -64499924 + AT_rich Low_complexity Low_complexity 1 48 0 899 114 0 0 chr15 36880597 36880711 -64499810 - AluSg/x SINE Alu -26 284 171 1612 181 14 10 chr15 36880721 36881009 -64499512 - AluJo SINE Alu -23 289 1 2333 109 0 3 chr15 36881095 36881406 -64499115 - AluSx SINE Alu -2 310 1 620 220 38 0 chr15 36881447 36881606 -64498915 + L1MD3 LINE L1 7737 7901 -94 1598 122 24 116 chr15 36881607 36881935 -64498586 + AluYb8 SINE Alu 5 302 -16 377 143 14 0 chr15 36881970 36882040 -64498481 + L1MA5A LINE L1 6222 6292 -5 494 139 25 0 chr15 36882052 36882131 -64498390 + AluSx SINE Alu 2 82 -231 1506 140 0 9 chr15 36882306 36882534 -64497987 + AluSx SINE Alu 70 295 -15 2398 103 0 0 chr15 36882534 36882844 -64497677 + AluSg SINE Alu 1 310 0 530 181 4 2 chr15 36882867 36882956 -64497565 + L1MD3 LINE L1 6261 6348 -1637 692 168 38 23 chr15 36882956 36883087 -64497434 + FLAM_C SINE Alu 1 133 0 2205 133 0 0 chr15 36883097 36883406 -64497115 + AluSx SINE Alu 1 309 -3 2195 132 0 3 chr15 36883415 36883726 -64496795 + AluSx SINE Alu 1 310 -2 571 270 129 22 chr15 36883732 36884043 -64496478 + L1ME LINE L1 4749 5092 -1054 2374 112 0 0 chr15 36884045 36884357 -64496164 + AluSx SINE Alu 1 312 0 1135 207 3 116 chr15 36884366 36884695 -64495826 - AluJo SINE Alu -9 293 2 403 151 4 30 chr15 36884701 36884784 -64495737 + Alu SINE Alu 1 53 -250 31 0 0 0 chr15 36884792 36884823 -64495698 + AT_rich Low_complexity Low_complexity 1 31 0 2251 109 0 0 chr15 36884943 36885256 -64495265 + AluSx SINE Alu 1 313 0 532 270 178 2 chr15 36885257 36885477 -64495044 + L1ME LINE L1 5483 5735 -431 2020 128 7 0 chr15 36885514 36885811 -64494710 - AluSg SINE Alu -11 299 1 23 68 0 0 chr15 36886221 36886265 -64494256 + AT_rich Low_complexity Low_complexity 1 44 0 1300 240 130 18 chr15 36886987 36887379 -64493142 - LTR33A LTR ERVL 0 523 88 297 342 36 0 chr15 36887406 36887517 -64493004 + L3 LINE CR1 1192 1306 -271 2395 95 3 0 chr15 36887538 36887842 -64492679 + AluSg SINE Alu 1 305 -5 384 167 15 0 chr15 36888015 36888081 -64492440 - MLT1F1 LTR MaLR 0 567 501 2496 46 0 16 chr15 36888415 36888722 -64491799 + AluY SINE Alu 1 302 -9 2313 43 50 0 chr15 36889730 36890010 -64490511 - AluYa5 SINE Alu -17 294 1 24 0 0 0 chr15 36890300 36890324 -64490197 + AT_rich Low_complexity Low_complexity 1 24 0 1073 233 96 52 chr15 36890566 36890931 -64489590 - MLT1F1 LTR MaLR -52 515 135 621 202 9 0 chr15 36891563 36891677 -64488844 + FLAM_C SINE Alu 1 115 -28 1102 118 13 0 chr15 36891693 36891846 -64488675 - AluSg/x SINE Alu -21 289 135 2337 105 0 0 chr15 36891859 36892155 -64488366 - AluSg SINE Alu -14 296 1 1126 160 11 0 chr15 36892170 36892345 -64488176 + AluJb SINE Alu 130 306 -6 634 157 107 8 chr15 36892410 36892531 -64487990 + FLAM_C SINE Alu 1 133 0 1476 163 37 4 chr15 36892635 36892880 -64487641 + AluJo SINE Alu 43 295 -17 2216 99 14 0 chr15 36892887 36893180 -64487341 + AluSp SINE Alu 1 297 -16 312 332 79 52 chr15 36893269 36893343 -64487178 + L2 LINE L2 2026 2097 -1217 2334 69 14 7 chr15 36893343 36893634 -64486887 - AluY SINE Alu -16 295 3 2311 97 3 7 chr15 36893643 36893943 -64486578 - AluSp SINE Alu -14 299 1 312 332 79 52 chr15 36893943 36894490 -64486031 + L2 LINE L2 2104 2674 -640 277 239 106 26 chr15 36894707 36894820 -64485701 - MER51B LTR ERV1 -240 137 16 2027 126 0 3 chr15 36895015 36895309 -64485212 - AluY SINE Alu -18 293 1 1401 218 31 10 chr15 36895665 36895954 -64484567 - AluJb SINE Alu -17 295 1 2240 95 7 7 chr15 36896001 36896296 -64484225 - AluSg SINE Alu -15 295 1 32 26 0 0 chr15 36897028 36897067 -64483454 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr15 36897158 36897185 -64483336 + AT_rich Low_complexity Low_complexity 1 27 0 1150 110 0 0 chr15 36897667 36897821 -64482700 + AluSg/x SINE Alu 148 301 -11 23 0 0 0 chr15 36898824 36898847 -64481674 + AT_rich Low_complexity Low_complexity 1 23 0 700 197 86 105 chr15 36899057 36899112 -64481409 - MER20B DNA MER1_type -6 777 722 2092 104 10 14 chr15 36899112 36899409 -64481112 - AluSx SINE Alu -15 297 2 700 197 86 105 chr15 36899409 36899595 -64480926 - MER20B DNA MER1_type -61 722 541 2125 128 0 3 chr15 36899595 36899885 -64480636 - AluSg SINE Alu -20 290 2 700 197 86 105 chr15 36899885 36899946 -64480575 - MER20B DNA MER1_type -242 541 480 2023 105 20 7 chr15 36899948 36900244 -64480277 + AluY SINE Alu 2 301 -10 1721 177 10 3 chr15 36900530 36900824 -64479697 - AluJo SINE Alu -16 296 1 285 185 46 69 chr15 36900887 36900995 -64479526 - L1MB8 LINE L1 -29 6155 6049 180 0 0 0 chr15 36901034 36901054 -64479467 + (TG)n Simple_repeat Simple_repeat 1 20 0 1783 185 26 0 chr15 36901055 36901358 -64479163 - AluJo SINE Alu -1 311 1 710 188 99 133 chr15 36901358 36901662 -64478859 - L1M4 LINE L1 -700 5484 5188 1453 191 8 8 chr15 36901662 36901924 -64478597 - AluJb SINE Alu -45 267 6 710 188 99 133 chr15 36901924 36902089 -64478432 - L1M4 LINE L1 -996 5188 5019 1115 76 0 0 chr15 36902173 36902305 -64478216 + AluY SINE Alu 1 132 -179 1319 111 0 0 chr15 36902344 36902536 -64477985 - AluSq SINE Alu 0 308 117 1934 117 62 4 chr15 36902549 36902823 -64477698 + AluSq SINE Alu 1 290 -23 1728 82 0 0 chr15 36902977 36903184 -64477337 + AluSq SINE Alu 1 207 -106 336 80 0 0 chr15 36903184 36903234 -64477287 + AluSq SINE Alu 251 300 -1 1743 128 62 40 chr15 36904915 36904965 -64475556 - MER46B DNA MER2_type -2495 236 189 2337 98 0 7 chr15 36904965 36905260 -64475261 - AluSq SINE Alu -20 293 1 1743 128 62 40 chr15 36905260 36905562 -64474959 - MER46B DNA MER2_type -2542 189 1 263 257 157 36 chr15 36905706 36905846 -64474675 - L2 LINE L2 -1 3312 3156 531 312 92 25 chr15 36905850 36906205 -64474316 - L2 LINE L2 -267 3046 2668 659 186 11 90 chr15 36906404 36906443 -64474078 - L1MB7 LINE L1 -19 6165 6124 1702 158 65 0 chr15 36906443 36906735 -64473786 - AluJb SINE Alu -1 311 1 659 186 11 90 chr15 36906735 36906872 -64473649 - L1MB7 LINE L1 -60 6124 6003 2127 107 10 3 chr15 36906872 36907171 -64473350 - AluSx SINE Alu -10 302 2 1769 171 0 7 chr15 36907318 36907610 -64472911 - AluSx SINE Alu -22 290 1 539 256 66 5 chr15 36907615 36907826 -64472695 - L1M4 LINE L1 -3054 3092 2869 560 118 0 0 chr15 36907829 36907905 -64472616 + FRAM SINE Alu 49 124 -52 1000 197 25 10 chr15 36908026 36908229 -64472292 - AluJo SINE Alu -106 206 1 216 247 260 0 chr15 36908283 36908356 -64472165 + MIR SINE MIR 56 147 -115 2334 104 0 3 chr15 36908534 36908842 -64471679 + AluSc SINE Alu 1 307 -2 512 311 23 27 chr15 36908974 36909234 -64471287 - AluSx SINE Alu -43 269 11 1217 137 0 0 chr15 36910107 36910290 -64470231 + AluSq SINE Alu 121 303 -10 1966 108 7 59 chr15 36910329 36910636 -64469885 + AluSx SINE Alu 3 293 -19 2185 89 14 10 chr15 36910663 36910955 -64469566 + AluSg SINE Alu 1 293 -17 347 216 81 0 chr15 36910981 36911055 -64469466 - MER2 DNA MER2_type -1 344 265 564 242 8 8 chr15 36911055 36911187 -64469334 + FLAM_C SINE Alu 2 133 -10 747 101 42 0 chr15 36911208 36911327 -64469194 - MER2 DNA MER2_type -139 206 83 2363 50 4 7 chr15 36911331 36911611 -64468910 + AluY SINE Alu 18 296 -15 1423 198 7 17 chr15 36912039 36912337 -64468184 + AluSx SINE Alu 3 297 -15 211 214 18 62 chr15 36912769 36912881 -64467640 + T-rich Low_complexity Low_complexity 2 108 0 424 295 7 13 chr15 36913083 36913232 -64467289 - AluSq/x SINE Alu -154 148 1 1581 136 30 8 chr15 36913234 36913494 -64467027 - AluSp SINE Alu 0 313 52 1555 149 8 0 chr15 36913494 36913728 -64466793 + AluSg SINE Alu 64 300 -10 25 0 0 0 chr15 36913728 36913753 -64466768 + AT_rich Low_complexity Low_complexity 1 25 0 1927 158 7 0 chr15 36913805 36914086 -64466435 + AluSx SINE Alu 1 299 -13 244 0 0 0 chr15 36914086 36914113 -64466408 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1927 158 7 0 chr15 36914113 36914128 -64466393 + AluSx SINE Alu 299 312 0 3037 149 31 38 chr15 36914129 36914359 -64466162 + MER41B LTR ERV1 1 231 -404 2512 81 0 0 chr15 36914359 36914668 -64465853 + AluSx SINE Alu 1 309 -3 3037 149 31 38 chr15 36914668 36914989 -64465532 + MER41B LTR ERV1 231 548 -87 332 95 0 48 chr15 36915001 36915064 -64465457 - L1MA3 LINE L1 0 6305 6246 2216 116 0 0 chr15 36915095 36915387 -64465134 + AluSq SINE Alu 5 296 -17 430 91 91 0 chr15 36915473 36915550 -64464971 - L1PB1 LINE L1 -4 6147 6064 290 188 29 14 chr15 36915777 36915846 -64464675 - L1PB1 LINE L1 -83 6068 5999 1929 138 62 0 chr15 36915849 36916138 -64464383 - AluSx SINE Alu -5 307 1 551 187 9 0 chr15 36916141 36916248 -64464273 + MER41A LTR ERV1 439 546 -8 456 277 0 0 chr15 36916260 36916390 -64464131 + L1M4 LINE L1 4672 4801 -1345 493 120 0 93 chr15 36916391 36916435 -64464086 + LTR8A LTR ERV1 1 47 -680 1798 166 16 3 chr15 36916435 36916743 -64463778 + AluSx SINE Alu 1 312 0 493 120 0 93 chr15 36916743 36916806 -64463715 + LTR8A LTR ERV1 47 98 -629 * 789 112 8 8 chr15 36916798 36916923 -64463598 + LTR9B LTR ERV1 437 561 -83 1832 102 0 0 chr15 36916974 36917220 -64463301 + AluSg SINE Alu 53 298 -12 1976 154 72 62 chr15 36917221 36917575 -64462946 + LTR8A LTR ERV1 214 508 -183 1844 136 25 7 chr15 36917575 36917861 -64462660 + AluSx SINE Alu 1 291 -21 1976 154 72 62 chr15 36917861 36918000 -64462521 + LTR8A LTR ERV1 508 644 -47 461 231 37 0 chr15 36918237 36918345 -64462176 + LTR8 LTR ERV1 533 644 -47 318 85 489 0 chr15 36918374 36918468 -64462053 - L1MB7 LINE L1 -12 6172 6033 210 71 0 0 chr15 36918500 36918528 -64461993 + (A)n Simple_repeat Simple_repeat 1 28 0 499 160 0 0 chr15 36918535 36918610 -64461911 + AluS SINE Alu 2 76 -237 2528 93 55 22 chr15 36918610 36918717 -64461804 - MER51B LTR ERV1 0 377 275 1581 199 13 0 chr15 36918717 36919023 -64461498 + AluSx SINE Alu 1 310 -2 2528 93 55 22 chr15 36919023 36919280 -64461241 - MER51B LTR ERV1 -102 275 1 880 141 6 113 chr15 36919282 36919459 -64461062 - MER51-int LTR ERV1 -1 7815 7658 666 254 27 27 chr15 36919459 36919683 -64460838 - AluSg/x SINE Alu -17 293 70 243 248 20 40 chr15 36920125 36920226 -64460295 - LTR54B LTR ERV1 -396 102 4 2866 116 55 38 chr15 36920226 36920557 -64459964 - MER41-int LTR ERV1 -655 6882 6539 2154 125 0 7 chr15 36920557 36920860 -64459661 - AluSg SINE Alu -9 301 1 2866 116 55 38 chr15 36920860 36921002 -64459519 - MER41-int LTR ERV1 -998 6539 6401 1178 154 13 53 chr15 36921005 36921232 -64459289 + AluSp SINE Alu 1 218 -95 297 155 0 0 chr15 36921275 36921333 -64459188 + (CA)n Simple_repeat Simple_repeat 2 59 0 1027 169 0 6 chr15 36921333 36921516 -64459005 + AluY SINE Alu 128 309 -2 465 145 0 0 chr15 36922105 36922174 -64458347 + AluSp SINE Alu 228 296 -17 3048 125 16 38 chr15 36922174 36922268 -64458253 - MER41-int LTR ERV1 -1128 6409 6314 2194 75 0 0 chr15 36922268 36922535 -64457986 - AluSg SINE Alu -7 303 37 3048 125 16 38 chr15 36922535 36923063 -64457458 - MER41-int LTR ERV1 -1223 6314 5753 1725 129 3 83 chr15 36923071 36923397 -64457124 + AluSx SINE Alu 1 300 -12 319 103 184 92 chr15 36923397 36923484 -64457037 - MER41-int LTR ERV1 -2194 5343 5249 * 2115 110 32 11 chr15 36923483 36923873 -64456648 - MER41-int LTR ERV1 -1710 4553 2211 256 151 23 128 chr15 36923852 36923938 -64456583 - MER41-int LTR ERV1 -3239 1978 1902 * 2095 144 0 0 chr15 36923939 36924238 -64456283 - AluSx SINE Alu -13 299 1 207 0 0 0 chr15 36924311 36924334 -64456187 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 448 265 37 19 chr15 36924351 36924513 -64456008 - L2 LINE L2 -58 3214 3050 2119 101 31 3 chr15 36924954 36925263 -64455258 - AluSx SINE Alu 0 312 1 2215 92 13 29 chr15 36925273 36925587 -64454934 - AluSp SINE Alu -4 309 1 2073 146 55 10 chr15 36925593 36925993 -64454528 - MER41-int LTR ERV1 -2344 4652 2820 * 4842 106 133 2 chr15 36925965 36926792 -64453729 - MER41-int LTR ERV1 -4489 3327 2393 4940 98 6 20 chr15 36926793 36927377 -64453144 + LTR8 LTR ERV1 1 575 -116 2294 91 3 3 chr15 36927377 36927674 -64452847 + AluSg SINE Alu 5 301 -9 4940 98 6 20 chr15 36927674 36927782 -64452739 + LTR8 LTR ERV1 575 683 -8 4515 136 50 31 chr15 36927784 36929131 -64451390 + pTR5 LTR ERV1 741 2437 -1 700 106 139 0 chr15 36929143 36929294 -64451227 - MER41-int LTR ERV1 -5421 2395 2224 * 728 95 135 7 chr15 36929278 36929426 -64451095 - MER41-int LTR ERV1 -5697 2119 1953 1137 106 0 0 chr15 36929448 36929589 -64450932 - AluSg/x SINE Alu -27 283 143 989 186 14 59 chr15 36929703 36929924 -64450597 - AluJo SINE Alu -15 297 87 1491 140 132 4 chr15 36930080 36930330 -64450191 - AluJb SINE Alu -30 282 1 2522 67 0 3 chr15 36930431 36930744 -64449777 + AluSq SINE Alu 1 312 -1 1175 224 24 14 chr15 36931113 36931403 -64449118 - AluSc SINE Alu -2 297 5 22 56 0 0 chr15 36931688 36931724 -64448797 + AT_rich Low_complexity Low_complexity 1 36 0 313 316 64 64 chr15 36931842 36932155 -64448366 + L2 LINE L2 2384 2696 -618 481 162 0 0 chr15 36932171 36932245 -64448276 + AluSp/q SINE Alu 218 291 -22 180 0 0 0 chr15 36932252 36932272 -64448249 + (TA)n Simple_repeat Simple_repeat 1 20 0 248 298 36 12 chr15 36932377 36932461 -64448060 + LTR67 LTR ERVL 428 513 -44 1346 138 152 9 chr15 36932463 36932751 -64447770 + MSTA LTR MaLR 1 335 -91 2184 130 0 0 chr15 36932930 36933229 -64447292 - AluSx SINE Alu -13 299 1 228 65 32 0 chr15 36933229 36933260 -64447261 + MSTA LTR MaLR 324 355 -9 316 280 126 7 chr15 36933554 36933697 -64446824 + L2 LINE L2 3110 3269 -3 2003 132 14 0 chr15 36933717 36934005 -64446516 + AluSx SINE Alu 4 295 -17 319 237 79 72 chr15 36934117 36934386 -64446135 - AluY SINE Alu -61 240 1 313 336 51 14 chr15 36935070 36935284 -64445237 - AluY SINE Alu -79 222 1 1447 171 110 13 chr15 36935286 36935596 -64444925 - L1PA16 LINE L1 -7 6159 5820 2547 67 0 3 chr15 36935727 36936040 -64444481 - AluSx SINE Alu 0 312 1 752 196 20 0 chr15 36936232 36936380 -64444141 - L1ME1 LINE L1 -5 6161 6011 1306 94 19 61 chr15 36936380 36936505 -64444016 - MER41B LTR ERV1 0 635 521 2597 53 0 0 chr15 36936505 36936809 -64443712 + AluY SINE Alu 1 304 -7 1306 94 19 61 chr15 36936809 36936895 -64443626 - MER41B LTR ERV1 -114 521 433 1068 209 21 101 chr15 36936895 36936954 -64443567 - L1M4 LINE L1 -2360 3786 3724 1940 139 14 10 chr15 36936954 36937249 -64443272 + AluJb SINE Alu 1 296 -16 1068 209 21 101 chr15 36937249 36937421 -64443100 - L1M4 LINE L1 -2422 3724 3594 1788 158 7 7 chr15 36937421 36937713 -64442808 - AluJb SINE Alu -20 292 1 1068 209 21 101 chr15 36937713 36937857 -64442664 - L1M4 LINE L1 -2552 3594 3440 977 215 39 8 chr15 36937863 36938119 -64442402 - L1MA4 LINE L1 -6 6294 6031 191 35 0 35 chr15 36938119 36938148 -64442373 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1089 153 6 0 chr15 36938148 36938311 -64442210 - AluSq SINE Alu -30 283 120 1141 154 0 0 chr15 36938311 36938486 -64442035 - AluSg/x SINE Alu -1 309 135 364 149 0 15 chr15 36938496 36938563 -64441958 - AluSq SINE Alu -100 203 138 1746 174 7 3 chr15 36938567 36938861 -64441660 - AluSx SINE Alu -16 296 2 42 48 0 0 chr15 36939182 36939245 -64441276 + AT_rich Low_complexity Low_complexity 1 63 0 1826 123 19 4 chr15 36939932 36940193 -64440328 + AluSx SINE Alu 3 267 -45 47 0 0 0 chr15 36940193 36940240 -64440281 + AT_rich Low_complexity Low_complexity 1 47 0 2545 64 0 0 chr15 36940240 36940538 -64439983 - AluY SINE Alu -13 298 1 1447 171 110 13 chr15 36940540 36940850 -64439671 - L1PA16 LINE L1 -7 6159 5820 2559 67 0 3 chr15 36940985 36941298 -64439223 - AluSx SINE Alu 0 312 1 752 196 20 0 chr15 36941490 36941638 -64438883 - L1ME1 LINE L1 -5 6161 6011 1306 94 19 61 chr15 36941638 36941763 -64438758 - MER41B LTR ERV1 0 635 521 2588 53 0 0 chr15 36941763 36942066 -64438455 + AluY SINE Alu 1 303 -8 1306 94 19 61 chr15 36942066 36942152 -64438369 - MER41B LTR ERV1 -114 521 433 1134 216 22 74 chr15 36942152 36942211 -64438310 - L1M4 LINE L1 -2360 3786 3725 1905 138 14 14 chr15 36942211 36942507 -64438014 + AluJb SINE Alu 1 296 -16 1134 216 22 74 chr15 36942507 36942668 -64437853 - L1M4 LINE L1 -2421 3725 3590 1788 158 7 7 chr15 36942668 36942960 -64437561 - AluJb SINE Alu -20 292 1 1134 216 22 74 chr15 36942960 36943104 -64437417 - L1M4 LINE L1 -2556 3590 3440 977 215 39 8 chr15 36943110 36943366 -64437155 - L1MA4 LINE L1 -6 6294 6031 191 35 0 35 chr15 36943366 36943395 -64437126 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1089 153 6 0 chr15 36943395 36943558 -64436963 - AluSq SINE Alu -30 283 120 1702 127 0 0 chr15 36943558 36943802 -64436719 - AluSg/x SINE Alu 0 312 69 2285 95 24 0 chr15 36943810 36944104 -64436417 - AluSx SINE Alu -11 301 1 2291 116 0 3 chr15 36944147 36944449 -64436072 - AluSx SINE Alu -11 301 1 350 320 26 0 chr15 36944457 36944610 -64435911 - L1M4 LINE L1 -2701 3445 3289 2094 125 0 10 chr15 36944629 36944934 -64435587 - AluSx SINE Alu -10 302 1 1200 172 14 0 chr15 36945017 36945226 -64435295 + AluSp SINE Alu 1 212 -101 214 191 48 0 chr15 36945276 36945318 -64435203 + (TTAAA)n Simple_repeat Simple_repeat 1 44 0 2121 109 3 0 chr15 36946204 36946488 -64434033 - AluSg SINE Alu -20 290 6 2166 148 0 0 chr15 36946557 36946868 -64433653 + AluSx SINE Alu 1 311 -1 254 171 171 49 chr15 36947061 36947143 -64433378 + L1ME LINE L1 5729 5820 -301 686 235 99 0 chr15 36947329 36947491 -64433030 - FRAM SINE Alu -4 172 1 1995 159 7 0 chr15 36947536 36947844 -64432677 + AluSx SINE Alu 1 310 -2 476 103 0 56 chr15 36947844 36947951 -64432570 + (GGAA)n Simple_repeat Simple_repeat 1 101 0 1941 145 0 24 chr15 36947964 36948261 -64432260 + AluSx SINE Alu 1 290 -22 24 32 0 0 chr15 36948315 36948346 -64432175 + AT_rich Low_complexity Low_complexity 1 31 0 1272 104 0 0 chr15 36949412 36949585 -64430936 - AluSg/x SINE Alu -6 306 134 2189 128 0 0 chr15 36949585 36949881 -64430640 - AluSq SINE Alu -17 296 1 2053 134 7 0 chr15 36949881 36950172 -64430349 - AluSx SINE Alu -17 295 2 2417 82 0 0 chr15 36950182 36950474 -64430047 - AluSg SINE Alu -18 292 1 283 61 0 8 chr15 36950574 36950614 -64429907 + AluS SINE Alu 56 89 -213 2296 89 7 13 chr15 36951337 36951640 -64428881 + AluSg SINE Alu 1 301 -9 360 135 0 0 chr15 36951741 36951793 -64428728 + MER66B LTR ERV1 295 346 -140 24 32 0 0 chr15 36951793 36951824 -64428697 + AT_rich Low_complexity Low_complexity 1 31 0 2276 80 3 10 chr15 36952990 36953289 -64427232 - AluY SINE Alu -14 297 1 960 169 7 0 chr15 36953671 36953853 -64426668 - AluJo SINE Alu 0 309 127 1939 145 0 24 chr15 36953857 36954153 -64426368 - AluJb SINE Alu -22 290 2 1262 149 4 55 chr15 36954467 36954534 -64425987 - MER2 DNA MER2_type -7 338 269 2199 123 3 0 chr15 36954534 36954834 -64425687 + AluSx SINE Alu 12 312 0 1262 149 4 55 chr15 36954834 36955001 -64425520 - MER2 DNA MER2_type -76 269 116 269 177 0 0 chr15 36955031 36955093 -64425428 + MER2 DNA MER2_type 98 159 -186 2289 98 0 38 chr15 36955116 36955225 -64425296 - AluSq SINE Alu -9 304 192 2379 82 26 0 chr15 36955225 36955529 -64424992 - AluSp SINE Alu -1 312 1 2289 98 0 38 chr15 36955529 36955735 -64424786 - AluSq SINE Alu -121 192 1 547 167 11 11 chr15 36955764 36955854 -64424667 - MER2 DNA MER2_type -255 90 1 2268 102 3 3 chr15 36956078 36956381 -64424140 + AluSp SINE Alu 1 303 -10 950 178 99 16 chr15 36956441 36956632 -64423889 - MER58C DNA MER1_type -8 207 1 293 226 12 0 chr15 36956643 36956727 -64423794 + C-rich Low_complexity Low_complexity 4 88 0 1628 137 4 4 chr15 36956730 36956979 -64423542 - AluSq SINE Alu -6 307 59 1010 184 6 0 chr15 36957367 36957515 -64423006 + FRAM SINE Alu 1 23 -153 2286 106 3 0 chr15 36957515 36957816 -64422705 - AluSc SINE Alu -6 303 2 1010 184 6 0 chr15 36957816 36957835 -64422686 + FRAM SINE Alu 23 40 0 338 109 0 0 chr15 36958058 36958104 -64422417 + Alu SINE Alu 1 46 -257 1803 106 4 4 chr15 36958104 36958341 -64422180 - AluSx SINE Alu -75 237 1 2043 130 7 3 chr15 36958352 36958653 -64421868 - AluSg SINE Alu -8 302 1 1897 136 3 20 chr15 36958900 36959202 -64421319 + AluJo SINE Alu 2 298 -14 349 287 155 0 chr15 36959221 36959395 -64421126 + MIR SINE MIR 46 246 -16 580 103 0 0 chr15 36959467 36959545 -64420976 + AluJ/FLAM SINE Alu 2 79 -233 2075 92 43 3 chr15 36959916 36960198 -64420323 + AluSc SINE Alu 1 293 -16 1049 178 126 25 chr15 36960941 36961227 -64419294 - MER46C DNA MER2_type -4 334 20 2098 135 0 7 chr15 36961967 36962270 -64418251 - AluSx SINE Alu -11 301 1 876 76 0 34 chr15 36962271 36962390 -64418131 - AluSq/x SINE Alu -177 135 21 2133 116 0 19 chr15 36962639 36962949 -64417572 + AluSc SINE Alu 1 304 -5 2315 97 3 0 chr15 36963825 36964123 -64416398 - AluSp SINE Alu -14 299 1 2489 76 0 0 chr15 36964764 36965068 -64415453 - AluY SINE Alu -7 304 1 1439 226 113 31 chr15 36965107 36965428 -64415093 - L2 LINE L2 -4 3309 3016 2309 72 0 0 chr15 36965428 36965721 -64414800 + AluY SINE Alu 1 293 -18 1439 226 113 31 chr15 36965721 36965945 -64414576 - L2 LINE L2 -297 3016 2714 2005 114 3 10 chr15 36965945 36966244 -64414277 - AluSx SINE Alu -15 297 1 1439 226 113 31 chr15 36966244 36966266 -64414255 - L2 LINE L2 -599 2714 2695 881 65 40 0 chr15 36966285 36966433 -64414088 - AluY SINE Alu 0 306 154 1961 123 3 13 chr15 36966930 36967238 -64413283 - AluSx SINE Alu -7 305 1 1582 46 25 0 chr15 36967279 36967500 -64413021 - AluY SINE Alu 0 306 81 807 211 40 15 chr15 36967551 36967750 -64412771 - L1MB8 LINE L1 -6 6172 5969 1039 136 113 0 chr15 36967752 36967964 -64412557 + AluSq SINE Alu 86 317 0 2214 106 3 0 chr15 36967967 36968269 -64412252 + AluSg SINE Alu 1 303 -7 3283 132 21 67 chr15 36968273 36968418 -64412103 - L1MB8 LINE L1 -254 5924 5774 1856 151 0 7 chr15 36968418 36968709 -64411812 - AluJo SINE Alu -23 289 1 3283 132 21 67 chr15 36968709 36968998 -64411523 - L1MB8 LINE L1 -404 5774 5525 2256 63 0 20 chr15 36968998 36969298 -64411223 - AluY SINE Alu -17 294 1 3283 132 21 67 chr15 36969298 36969491 -64411030 - L1MB8 LINE L1 -653 5525 5325 1609 175 0 14 chr15 36969491 36969788 -64410733 - AluJo SINE Alu -19 293 1 789 167 0 0 chr15 36969789 36969921 -64410600 - AluJo SINE Alu -176 136 5 334 178 14 41 chr15 36969921 36969994 -64410527 - L1MB8 LINE L1 -848 5336 5266 1364 147 12 126 chr15 36970055 36970412 -64410109 + AluJb SINE Alu 1 302 0 1343 152 56 24 chr15 36970806 36971056 -64409465 - AluJb SINE Alu -54 258 1 1766 124 16 46 chr15 36971251 36971557 -64408964 + AluSq SINE Alu 1 297 -16 1203 200 52 30 chr15 36972021 36972326 -64408195 - AluJo SINE Alu 0 312 1 1981 107 11 0 chr15 36972688 36972997 -64407524 - AluSx SINE Alu 0 312 1 739 157 0 50 chr15 36973079 36973219 -64407302 - FLAM_C SINE Alu 0 133 1 1926 131 0 0 chr15 36973429 36973712 -64406809 - AluSx SINE Alu -2 310 28 2066 107 13 13 chr15 36973899 36974208 -64406313 - AluSp SINE Alu -4 309 1 2093 92 3 0 chr15 36974219 36974501 -64406020 - AluSg SINE Alu -22 288 6 1066 152 0 0 chr15 36975279 36975450 -64405071 + AluSg/x SINE Alu 136 306 -6 368 256 23 52 chr15 36975519 36975568 -64404953 - HAL1 LINE L1 -116 2391 2342 2013 119 7 19 chr15 36975568 36975878 -64404643 - AluSx SINE Alu -6 306 1 368 256 23 52 chr15 36975878 36976000 -64404521 - HAL1 LINE L1 -165 2342 2225 845 120 8 0 chr15 36976061 36976186 -64404335 + AluSg/x SINE Alu 174 299 -11 355 235 104 0 chr15 36976192 36976307 -64404214 - HAL1 LINE L1 -351 2156 2030 246 207 0 0 chr15 36976308 36976366 -64404155 + CT-rich Low_complexity Low_complexity 3 60 0 260 62 0 0 chr15 36976368 36976400 -64404121 - AluJb SINE Alu -14 288 257 962 173 6 6 chr15 36976402 36976570 -64403951 - AluJb SINE Alu -144 168 1 315 214 43 0 chr15 36976758 36976828 -64403693 - HAL1 LINE L1 -590 1917 1845 2614 137 33 5 chr15 36976840 36977264 -64403257 - MER39B LTR ERV1 0 653 218 278 154 0 31 chr15 36977265 36977330 -64403191 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 854 144 25 56 chr15 36977333 36977493 -64403028 - AluJo/FRAM SINE Alu -24 288 134 2120 118 0 0 chr15 36977493 36977797 -64402724 - AluSx SINE Alu -8 304 1 2170 96 3 10 chr15 36977799 36978102 -64402419 - AluSx SINE Alu -11 301 1 2141 123 0 0 chr15 36978121 36978431 -64402090 - AluSx SINE Alu -2 310 1 1294 133 19 19 chr15 36978431 36978641 -64401880 - MER39B LTR ERV1 -443 210 1 272 275 120 54 chr15 36978643 36978914 -64401607 - HAL1 LINE L1 -1913 594 272 23 0 0 0 chr15 36978981 36979004 -64401517 + AT_rich Low_complexity Low_complexity 1 23 0 1099 151 0 0 chr15 36979130 36979302 -64401219 - AluSg/x SINE Alu -14 298 127 1367 174 40 22 chr15 36979302 36979577 -64400944 + AluJo SINE Alu 6 285 -27 231 33 0 0 chr15 36979577 36979588 -64400933 + (TA)n Simple_repeat Simple_repeat 1 11 -19 2047 123 0 7 chr15 36979588 36979897 -64400624 + AluSx SINE Alu 2 308 -4 231 33 0 0 chr15 36979897 36979915 -64400606 + (TA)n Simple_repeat Simple_repeat 10 30 0 752 162 7 22 chr15 36980057 36980193 -64400328 - AluJo SINE Alu -177 135 2 2186 109 0 0 chr15 36980276 36980578 -64399943 + AluSg SINE Alu 1 302 -8 2006 155 27 57 chr15 36980832 36980890 -64399631 - MER21B LTR ERV1 -1 862 804 2190 102 3 0 chr15 36980890 36981184 -64399337 + AluSx SINE Alu 1 295 -17 2006 155 27 57 chr15 36981184 36981526 -64398995 - MER21B LTR ERV1 -59 804 474 1890 138 0 10 chr15 36981534 36981823 -64398698 - AluSx SINE Alu -26 286 1 785 162 0 52 chr15 36981856 36982010 -64398511 + AluJb SINE Alu 3 148 -164 988 122 32 0 chr15 36982117 36982273 -64398248 + AluSc SINE Alu 135 295 -14 216 100 0 25 chr15 36982316 36982356 -64398165 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 306 200 50 0 chr15 36982631 36982691 -64397830 + MIR SINE MIR 129 191 -71 1189 233 20 0 chr15 36983075 36983324 -64397197 + MIR SINE MIR 8 261 -1 374 287 46 0 chr15 36983331 36983418 -64397103 - L2 LINE L2 -19 3253 3163 1898 151 13 0 chr15 36983689 36983993 -64396528 + AluJb SINE Alu 1 308 -4 278 193 246 0 chr15 36984060 36984174 -64396347 - MLT1L LTR MaLR -52 563 422 1696 169 6 22 chr15 36984527 36984841 -64395680 - AluJb SINE Alu -3 309 1 2291 96 3 10 chr15 36985176 36985490 -64395031 + AluSx SINE Alu 1 312 0 2150 103 3 3 chr15 36985524 36985825 -64394696 + AluSq SINE Alu 1 301 -12 2097 105 3 0 chr15 36986097 36986408 -64394113 + AluSq SINE Alu 1 312 0 2456 143 22 33 chr15 36986685 36986815 -64393706 + L1MB3 LINE L1 5701 5831 -352 2171 112 0 0 chr15 36986815 36987111 -64393410 + AluSg SINE Alu 1 296 -14 2456 143 22 33 chr15 36987111 36987468 -64393053 + L1MB3 LINE L1 5831 6183 0 2158 128 0 0 chr15 36987475 36987780 -64392741 + AluSx SINE Alu 1 305 -7 1025 169 14 29 chr15 36987831 36988038 -64392483 + AluJb SINE Alu 87 290 -22 866 138 0 36 chr15 36988049 36988187 -64392334 + AluJo/FLAM SINE Alu 1 133 -169 2106 96 0 17 chr15 36988190 36988491 -64392030 + AluSg SINE Alu 1 296 -14 525 200 30 0 chr15 36988509 36988609 -64391912 - FLAM_A SINE Alu -19 123 21 1745 70 9 0 chr15 36988621 36988848 -64391673 - AluSq SINE Alu -84 229 1 229 354 97 9 chr15 36988849 36988962 -64391559 + L2 LINE L2 3191 3313 0 1454 186 13 43 chr15 36989287 36989588 -64390933 + AluJb SINE Alu 1 292 -20 268 268 108 57 chr15 36989628 36989822 -64390699 + MLT1J LTR MaLR 239 442 -69 2033 115 0 0 chr15 36989924 36990211 -64390310 + AluSq SINE Alu 12 298 -15 1677 150 11 18 chr15 36990211 36990531 -64389990 + AluSx SINE Alu 1 318 0 2288 75 0 0 chr15 36990581 36990873 -64389648 + AluY SINE Alu 1 292 -19 2105 84 10 29 chr15 36991998 36992306 -64388215 + AluSx SINE Alu 1 302 -10 2146 121 0 0 chr15 36992380 36992685 -64387836 + AluSq SINE Alu 3 307 -6 374 278 21 0 chr15 36993026 36993123 -64387398 - MIR SINE MIR -118 144 46 699 105 0 9 chr15 36993313 36993418 -64387103 - AluSc SINE Alu -14 295 192 1750 92 62 45 chr15 36993808 36994100 -64386421 + AluSx SINE Alu 1 297 -15 1971 105 7 3 chr15 36994100 36994412 -64386109 + AluSp SINE Alu 1 313 0 2306 70 3 0 chr15 36994695 36994995 -64385526 - AluSx SINE Alu -11 301 1 180 111 0 0 chr15 36995917 36995944 -64384577 + (TTCC)n Simple_repeat Simple_repeat 4 30 0 2229 96 0 0 chr15 36996820 36997121 -64383400 - AluSx SINE Alu -10 302 2 299 367 51 17 chr15 36997498 36997675 -64382846 - L3 LINE CR1 -12 1565 1383 182 356 27 27 chr15 36998173 36998246 -64382275 - L2 LINE L2 -12 3260 3188 1605 179 0 28 chr15 36998549 36998868 -64381653 - AluJo SINE Alu -2 310 1 586 228 72 24 chr15 36999240 36999407 -64381114 + MIR SINE MIR 85 259 -3 1761 133 23 26 chr15 36999848 37000156 -64380365 + AluJb SINE Alu 1 307 -5 1050 159 6 6 chr15 37000694 37000857 -64379664 - FRAM SINE Alu -3 163 1 1899 153 0 0 chr15 37000867 37001167 -64379354 - AluJb SINE Alu -3 309 10 319 235 49 86 chr15 37001284 37001446 -64379075 - L1MC4 LINE L1 -138 7904 7749 2051 121 0 0 chr15 37001447 37001744 -64378777 - AluSq SINE Alu -16 297 1 2197 109 0 3 chr15 37001747 37002060 -64378461 - AluSx SINE Alu 0 312 1 1657 160 0 20 chr15 37002273 37002566 -64377955 + AluSx SINE Alu 3 289 -23 517 59 39 65 chr15 37002566 37002925 -64377596 + (TA)n Simple_repeat Simple_repeat 1 349 0 212 100 80 0 chr15 37002949 37002999 -64377522 + (TA)n Simple_repeat Simple_repeat 2 55 0 608 184 191 7 chr15 37003002 37003138 -64377383 - MER21B LTR ERV1 -400 463 303 709 199 0 15 chr15 37003180 37003311 -64377210 + FLAM_C SINE Alu 1 129 -4 1923 116 42 0 chr15 37003316 37003600 -64376921 + AluSx SINE Alu 1 296 -16 1425 131 143 12 chr15 37003600 37003859 -64376662 + AluSg1 SINE Alu 1 293 -16 24 0 0 0 chr15 37003859 37003883 -64376638 + AT_rich Low_complexity Low_complexity 1 24 0 1513 174 11 4 chr15 37003884 37004159 -64376362 - AluJb SINE Alu -35 277 1 1798 170 0 43 chr15 37004161 37004485 -64376036 - MER21B LTR ERV1 -547 316 7 995 146 0 0 chr15 37004513 37004671 -64375850 - AluSp/q SINE Alu 0 313 156 1643 78 91 8 chr15 37004672 37004915 -64375606 + AluSq SINE Alu 31 293 -20 2102 93 19 26 chr15 37005039 37005350 -64375171 + AluY SINE Alu 1 309 -2 1651 173 3 0 chr15 37005447 37005736 -64374785 + AluJb SINE Alu 5 294 -18 690 115 0 0 chr15 37005738 37005834 -64374687 + AluSq/x SINE Alu 38 133 -180 1771 133 14 0 chr15 37005837 37005966 -64374555 + AluSx SINE Alu 1 127 -175 2170 83 0 7 chr15 37005966 37006255 -64374266 + AluSc SINE Alu 15 301 -8 1771 133 14 0 chr15 37006255 37006423 -64374098 + AluSx SINE Alu 127 302 0 23 0 0 0 chr15 37006881 37006904 -64373617 + AT_rich Low_complexity Low_complexity 1 23 0 467 243 0 0 chr15 37007325 37007428 -64373093 - FLAM_A SINE Alu -5 137 35 2314 148 61 63 chr15 37007913 37008257 -64372264 - MLT1D LTR MaLR 0 505 161 2366 87 0 0 chr15 37008257 37008568 -64371953 + AluY SINE Alu 1 311 0 2314 148 61 63 chr15 37008568 37008729 -64371792 - MLT1D LTR MaLR -344 161 1 29 0 0 0 chr15 37008734 37008763 -64371758 + AT_rich Low_complexity Low_complexity 1 29 0 1682 163 0 23 chr15 37008810 37009111 -64371410 - AluJo SINE Alu -18 294 1 546 211 9 0 chr15 37009113 37009222 -64371299 - FLAM_A SINE Alu -12 130 21 1734 154 6 41 chr15 37009356 37009485 -64371036 + AluJo SINE Alu 6 138 -174 2279 44 41 3 chr15 37009485 37009778 -64370743 + AluY SINE Alu 1 304 -7 1734 154 6 41 chr15 37009778 37009966 -64370555 + AluJo SINE Alu 138 312 0 1930 127 7 7 chr15 37009973 37010273 -64370248 + AluSc SINE Alu 3 302 -7 1730 188 0 6 chr15 37010300 37010614 -64369907 + 7SLRNA srpRNA srpRNA 1 312 -8 1206 110 0 0 chr15 37010618 37010782 -64369739 + AluSg/x SINE Alu 130 293 -19 1995 93 7 47 chr15 37011340 37011670 -64368851 + AluSx SINE Alu 1 318 0 2279 88 0 25 chr15 37012052 37012369 -64368152 - AluSc SINE Alu 0 309 1 1772 128 14 14 chr15 37012858 37013181 -64367340 - AluSx SINE Alu 0 323 1 521 286 24 9 chr15 37013190 37013400 -64367121 - AluSq SINE Alu -25 288 76 1937 98 79 0 chr15 37014133 37014410 -64366111 - AluSc SINE Alu -10 299 1 29 0 0 0 chr15 37014480 37014509 -64366012 + AT_rich Low_complexity Low_complexity 1 29 0 504 234 0 0 chr15 37014509 37014616 -64365905 - AluJb SINE Alu -205 107 1 21 0 0 0 chr15 37014660 37014681 -64365840 + AT_rich Low_complexity Low_complexity 1 21 0 2223 103 3 0 chr15 37014794 37015096 -64365425 + AluSp SINE Alu 1 303 -10 2057 116 0 0 chr15 37015180 37015473 -64365048 - AluSc SINE Alu -16 293 1 248 308 55 0 chr15 37015688 37015779 -64364742 - MIR SINE MIR -1 261 166 977 131 0 7 chr15 37016805 37016942 -64363579 + AluSg/x SINE Alu 145 280 -30 180 0 0 0 chr15 37016945 37016965 -64363556 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2408 103 3 0 chr15 37016984 37017295 -64363226 + AluSq SINE Alu 1 312 -1 804 108 0 0 chr15 37017380 37017482 -64363039 + AluS SINE Alu 1 102 -211 2243 95 7 0 chr15 37018072 37018366 -64362155 + AluSg SINE Alu 1 296 -14 1059 190 68 0 chr15 37018661 37018866 -64361655 + MER20 DNA MER1_type 1 219 0 1766 168 71 69 chr15 37019157 37019331 -64361190 - L1MB7 LINE L1 -135 6049 5877 2080 99 0 64 chr15 37019331 37019644 -64360877 + AluSx SINE Alu 1 293 -19 1766 168 71 69 chr15 37019644 37019903 -64360618 - L1MB7 LINE L1 -307 5877 5615 1461 207 6 9 chr15 37019899 37020218 -64360303 - L1MB7 LINE L1 -935 5211 4894 * 2256 99 6 22 chr15 37020456 37020770 -64359751 - AluSq SINE Alu -4 309 1 311 182 65 0 chr15 37020785 37020862 -64359659 - FLAM_A SINE Alu 0 133 52 1379 88 88 10 chr15 37020862 37021056 -64359465 + AluY SINE Alu 87 295 -16 771 128 40 0 chr15 37021058 37021183 -64359338 + FLAM_C SINE Alu 3 132 -1 1905 157 3 13 chr15 37021236 37021536 -64358985 + AluSx SINE Alu 1 297 -15 1332 81 0 0 chr15 37021678 37021885 -64358636 + AluY SINE Alu 121 327 0 255 324 0 0 chr15 37021951 37022019 -64358502 - L2 LINE L2 -2 3311 3244 1045 188 0 11 chr15 37022019 37022200 -64358321 - AluJb SINE Alu -14 298 120 771 199 0 0 chr15 37022294 37022435 -64358086 - FLAM_C SINE Alu -1 142 2 902 129 0 8 chr15 37022501 37022633 -64357888 + AluJb SINE Alu 1 131 -181 1572 161 97 4 chr15 37023045 37023324 -64357197 - AluJo SINE Alu -7 305 1 2530 84 0 0 chr15 37023333 37023642 -64356879 - AluY SINE Alu -2 309 1 21 0 0 0 chr15 37023699 37023720 -64356801 + AT_rich Low_complexity Low_complexity 1 21 0 1085 67 7 0 chr15 37023998 37024133 -64356388 - AluSg SINE Alu -170 140 5 1702 176 0 18 chr15 37024140 37024419 -64356102 - AluJo SINE Alu -21 291 18 2131 124 0 19 chr15 37024522 37024829 -64355692 + AluSx SINE Alu 1 301 -11 239 289 106 14 chr15 37025237 37025379 -64355142 + HAL1 LINE L1 1283 1437 -1070 2197 115 3 16 chr15 37025388 37025700 -64354821 - AluSc SINE Alu -1 308 1 782 167 88 49 chr15 37025723 37025927 -64354594 - L1ME3A LINE L1 -10 6160 5949 2112 156 15 9 chr15 37026031 37026364 -64354157 + MER1B DNA MER1_type 3 337 0 317 59 0 39 chr15 37026375 37026426 -64354095 - FLAM_A SINE Alu 0 133 85 1260 141 22 0 chr15 37026426 37026610 -64353911 - AluSp SINE Alu -125 188 1 2291 88 17 0 chr15 37026739 37027035 -64353486 - AluSg1 SINE Alu -8 301 1 2619 68 0 0 chr15 37027496 37027805 -64352716 - AluSc SINE Alu 0 309 1 2261 82 4 0 chr15 37027993 37028323 -64352198 - AluY SINE Alu 0 331 1 1721 179 3 28 chr15 37028344 37028662 -64351859 - AluJo SINE Alu -2 310 1 799 189 118 43 chr15 37029500 37029889 -64350632 - L1MC4 LINE L1 0 8042 7533 240 87 152 0 chr15 37030039 37030085 -64350436 + AluSp/q SINE Alu 251 303 0 2160 102 0 17 chr15 37030126 37030421 -64350100 + AluSx SINE Alu 1 290 -22 472 265 143 16 chr15 37030455 37030644 -64349877 + MIR SINE MIR 20 232 -30 369 189 2 116 chr15 37031634 37031770 -64348751 - L1MC4 LINE L1 -1 8040 7889 597 122 128 13 chr15 37031792 37031948 -64348573 - Charlie5 DNA MER1_type -36 2576 2403 1031 101 7 7 chr15 37031950 37032099 -64348422 - AluSg/x SINE Alu -6 304 156 402 165 94 0 chr15 37032228 37032313 -64348208 + FRAM SINE Alu 74 166 0 778 253 87 29 chr15 37032361 37032638 -64347883 - L2 LINE L2 -5 3308 3016 1533 135 20 141 chr15 37032642 37032732 -64347789 + AluJo SINE Alu 3 102 -200 2280 90 10 3 chr15 37032732 37033021 -64347500 + AluSc SINE Alu 3 293 -16 2225 72 0 60 chr15 37033025 37033343 -64347178 + AluY SINE Alu 1 299 -12 1533 135 20 141 chr15 37033343 37033588 -64346933 + AluJo SINE Alu 105 302 0 183 331 113 26 chr15 37033800 37033951 -64346570 + L2 LINE L2 2932 3095 -177 197 310 0 0 chr15 37035050 37035108 -64345413 - L2 LINE L2 0 3272 3215 2180 118 0 31 chr15 37035197 37035339 -64345182 + AluSq SINE Alu 1 146 -167 2578 66 0 0 chr15 37035339 37035644 -64344877 + AluY SINE Alu 1 305 -6 2180 118 0 31 chr15 37035644 37035824 -64344697 + AluSq SINE Alu 146 313 0 570 68 0 0 chr15 37036318 37036391 -64344130 - AluS SINE Alu -239 74 2 340 203 152 0 chr15 37036431 37036510 -64344011 + L1MA10 LINE L1 6184 6274 -60 207 0 0 0 chr15 37036511 37036534 -64343987 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1017 108 0 0 chr15 37036534 37036663 -64343858 - AluSq/x SINE Alu -184 129 1 251 222 0 0 chr15 37036665 37036728 -64343793 + L1MA10 LINE L1 6266 6328 -6 465 199 0 117 chr15 37036733 37036778 -64343743 + L1M4 LINE L1 3622 3671 -2475 1989 156 10 0 chr15 37036778 37037086 -64343435 - AluSx SINE Alu -1 311 1 465 199 0 117 chr15 37037086 37037132 -64343389 + L1M4 LINE L1 3671 3721 -2425 2319 69 0 31 chr15 37037132 37037447 -64343074 + AluY SINE Alu 1 306 0 465 199 0 117 chr15 37037447 37037524 -64342997 + L1M4 LINE L1 3721 3772 -2374 507 261 43 27 chr15 37037544 37037732 -64342789 + L1M4 LINE L1 3757 3947 -2199 1408 129 5 0 chr15 37037736 37037945 -64342576 - AluSg/x SINE Alu -1 309 100 1027 149 0 0 chr15 37038201 37038349 -64342172 + AluSg/x SINE Alu 137 284 -28 2441 87 0 0 chr15 37038365 37038665 -64341856 - AluSg SINE Alu -10 300 1 193 229 184 18 chr15 37038691 37038800 -64341721 + MIR3 SINE MIR 2 128 -80 565 187 22 93 chr15 37038832 37038971 -64341550 - FLAM_A SINE Alu -3 130 2 2240 107 3 0 chr15 37039193 37039492 -64341029 - AluSg SINE Alu -8 302 3 2170 125 10 0 chr15 37039558 37039861 -64340660 - AluSq SINE Alu -7 306 1 821 204 0 7 chr15 37039992 37040144 -64340377 - FAM SINE Alu -34 151 1 1877 152 0 10 chr15 37040436 37040738 -64339783 + AluSx SINE Alu 1 299 -13 378 267 118 33 chr15 37041255 37041563 -64338958 - MLT1J LTR MaLR -33 582 154 1962 127 0 119 chr15 37041613 37041842 -64338679 - MER7A DNA MER2_type -2707 331 76 1552 167 3 54 chr15 37041842 37041988 -64338533 + AluJo SINE Alu 1 124 -188 2356 90 7 0 chr15 37041988 37042288 -64338233 + AluSq SINE Alu 1 302 -11 1552 167 3 54 chr15 37042288 37042458 -64338063 + AluJo SINE Alu 124 301 -11 1962 127 0 119 chr15 37042458 37042521 -64338000 - MER7A DNA MER2_type -2962 76 92 2470 76 0 16 chr15 37042527 37042841 -64337680 + AluY SINE Alu 1 309 -2 1281 129 32 5 chr15 37042841 37043051 -64337470 - L1PA13 LINE L1 -6 6157 5939 1962 127 0 119 chr15 37043051 37043135 -64337386 - MER7A DNA MER2_type -2945 93 1 2417 81 3 0 chr15 37043411 37043707 -64336814 + AluSg SINE Alu 1 297 -13 2522 69 10 3 chr15 37044987 37045292 -64335229 - AluSg SINE Alu -3 307 1 2314 106 0 0 chr15 37045347 37045640 -64334881 - AluSx SINE Alu -19 293 1 180 77 0 0 chr15 37045981 37046007 -64334514 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 445 213 70 48 chr15 37046368 37046576 -64333945 - L1MC4 LINE L1 -248 7560 7426 21 0 0 0 chr15 37047484 37047505 -64333016 + AT_rich Low_complexity Low_complexity 1 21 0 1905 112 84 3 chr15 37047797 37048083 -64332438 - AluSx SINE Alu -3 309 1 2245 117 3 0 chr15 37048448 37048747 -64331774 - AluSx SINE Alu -12 300 1 778 179 7 14 chr15 37048956 37049101 -64331420 - AluSg/x SINE Alu -32 278 135 240 35 0 0 chr15 37049101 37049130 -64331391 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 310 97 0 48 chr15 37049140 37049202 -64331319 + (TTTCC)n Simple_repeat Simple_repeat 1 59 0 1720 122 12 8 chr15 37049203 37049458 -64331063 - AluSx SINE Alu -6 306 51 239 69 0 0 chr15 37049558 37049587 -64330934 - Alu SINE Alu -262 37 9 1673 89 0 14 chr15 37049588 37049801 -64330720 - AluSx SINE Alu -102 210 1 547 167 11 11 chr15 37049830 37049920 -64330601 - MER2 DNA MER2_type -255 90 1 2026 125 3 10 chr15 37050144 37050448 -64330073 + AluSp SINE Alu 1 302 -11 703 233 90 11 chr15 37050510 37050699 -64329822 - MER58C DNA MER1_type -8 207 4 567 138 0 0 chr15 37051500 37051580 -64328941 - AluS SINE Alu -231 82 3 1861 153 0 0 chr15 37051584 37051866 -64328655 - AluSx SINE Alu -18 294 13 1853 104 0 4 chr15 37051923 37052172 -64328349 + AluSx SINE Alu 64 311 -1 2114 131 7 0 chr15 37052272 37052577 -64327944 + AluSq SINE Alu 1 307 -6 293 226 12 0 chr15 37052580 37052664 -64327857 + G-rich Low_complexity Low_complexity 4 88 0 924 183 99 16 chr15 37052675 37052866 -64327655 + MER58C DNA MER1_type 1 207 -8 2298 98 3 3 chr15 37052926 37053231 -64327290 - AluSp SINE Alu -8 305 1 547 167 11 11 chr15 37053455 37053545 -64326976 + MER2 DNA MER2_type 1 90 -255 2289 98 0 38 chr15 37053574 37053780 -64326741 + AluSq SINE Alu 1 192 -121 2409 79 26 0 chr15 37053780 37054084 -64326437 + AluSp SINE Alu 1 312 -1 2289 98 0 38 chr15 37054084 37054193 -64326328 + AluSq SINE Alu 192 304 -9 269 177 0 0 chr15 37054216 37054278 -64326243 - MER2 DNA MER2_type -186 159 98 1292 154 18 9 chr15 37054308 37054461 -64326060 + MER2 DNA MER2_type 116 273 -72 2180 123 3 7 chr15 37054461 37054763 -64325758 - AluSx SINE Alu 0 312 12 1292 154 18 9 chr15 37054763 37054830 -64325691 + MER2 DNA MER2_type 273 338 -7 1939 145 0 24 chr15 37055144 37055440 -64325081 + AluJb SINE Alu 2 290 -22 954 181 0 0 chr15 37055444 37055627 -64324894 + AluJo SINE Alu 127 309 0 2415 74 0 7 chr15 37056009 37056306 -64324215 + AluY SINE Alu 1 295 -16 24 32 0 0 chr15 37057472 37057503 -64323018 + AT_rich Low_complexity Low_complexity 1 31 0 360 135 0 0 chr15 37057503 37057555 -64322966 - MER66A LTR ERV1 -140 338 287 2296 75 30 3 chr15 37057656 37057951 -64322570 - AluSx SINE Alu -9 303 1 1309 173 112 61 chr15 37058089 37058517 -64322004 - LTR7 LTR ERV1 0 450 1 2383 99 0 0 chr15 37058770 37059072 -64321449 + AluSx SINE Alu 3 304 -8 2010 92 73 9 chr15 37060732 37061098 -64319423 - LTR7 LTR ERV1 0 450 1 235 227 62 62 chr15 37061134 37061231 -64319290 + Charlie4 DNA MER1_type 1865 1961 0 2076 108 3 26 chr15 37061795 37062102 -64318419 + AluSx SINE Alu 1 300 -12 2278 221 84 31 chr15 37062123 37062531 -64317990 - L1MA9 LINE L1 -30 6282 5824 1678 123 70 66 chr15 37062531 37062832 -64317689 - AluSx SINE Alu -10 302 1 2278 221 84 31 chr15 37062832 37063089 -64317432 - L1MA9 LINE L1 -488 5824 5582 1129 115 0 6 chr15 37063090 37063247 -64317274 + AluSg/x SINE Alu 136 291 -21 355 187 0 13 chr15 37063247 37063322 -64317199 - L1MA9 LINE L1 -717 5586 5513 2300 96 7 0 chr15 37063357 37063648 -64316873 - AluSq SINE Alu -20 293 1 1250 173 82 61 chr15 37063714 37064132 -64316389 - MLT1C LTR MaLR -1 389 1 706 172 17 0 chr15 37064203 37064319 -64316202 + FAM SINE Alu 23 140 -45 1191 171 26 8 chr15 37064319 37064553 -64315968 + L1MB3 LINE L1 5943 6180 -3 223 140 0 35 chr15 37064577 37064634 -64315887 + (TA)n Simple_repeat Simple_repeat 2 56 0 1837 158 38 0 chr15 37064794 37065085 -64315436 + AluSq SINE Alu 1 302 -11 486 0 0 0 chr15 37065085 37065139 -64315382 + (TA)n Simple_repeat Simple_repeat 2 55 0 396 212 71 0 chr15 37065200 37065285 -64315236 + L1MC4a LINE L1 5833 5923 -1885 1848 143 31 0 chr15 37065537 37065830 -64314691 - AluSq SINE Alu -9 304 3 1014 125 65 12 chr15 37065834 37066002 -64314519 - AluSg/x SINE Alu -1 311 135 1186 246 163 18 chr15 37066174 37066318 -64314203 - MLT1F LTR MaLR 0 542 420 2322 84 0 10 chr15 37066318 37066614 -64313907 + AluY SINE Alu 1 293 -18 1186 246 163 18 chr15 37066614 37066856 -64313665 - MLT1F LTR MaLR -122 420 100 2218 101 14 0 chr15 37066889 37067186 -64313335 - AluY SINE Alu -10 301 1 420 235 53 88 chr15 37067190 37067360 -64313161 - MER21B LTR ERV1 -149 714 551 672 205 107 49 chr15 37067364 37067434 -64313087 - L1 LINE L1 -3032 3114 3049 720 136 0 0 chr15 37067434 37067537 -64312984 - AluSg/x SINE Alu -12 300 198 2047 138 0 0 chr15 37067436 37067734 -64312787 - AluSx SINE Alu -14 298 1 672 205 107 49 chr15 37067537 37067737 -64312784 - L1 LINE L1 -3097 3049 3013 989 178 0 0 chr15 37067737 37067900 -64312621 - FAM SINE Alu -12 163 1 672 205 107 49 chr15 37067900 37068067 -64312454 - L1 LINE L1 -3133 3013 2857 572 192 0 10 chr15 37068149 37068253 -64312268 - MLT1F LTR MaLR -439 103 1 1650 277 0 64 chr15 37068300 37068628 -64311893 - AluSp SINE Alu -6 307 1 240 191 0 0 chr15 37068831 37068873 -64311648 + Alu SINE Alu 2 43 -257 284 167 0 0 chr15 37068974 37069016 -64311505 + Alu SINE Alu 247 288 -12 1977 151 0 0 chr15 37069102 37069407 -64311114 - AluSx SINE Alu -3 309 5 1056 254 120 44 chr15 37069412 37069925 -64310596 - L2 LINE L2 -8 3305 2763 1529 182 17 7 chr15 37069950 37070241 -64310280 - AluJo SINE Alu -16 296 3 1949 100 0 7 chr15 37070465 37070746 -64309775 - AluSg SINE Alu -31 279 1 628 116 0 74 chr15 37070756 37070877 -64309644 - AluSc SINE Alu -1 308 197 1091 180 109 8 chr15 37071223 37071521 -64309000 - L1MB4 LINE L1 -3 6177 5852 1859 114 10 17 chr15 37071555 37071844 -64308677 - AluSq SINE Alu -26 287 1 1840 128 10 13 chr15 37072084 37072388 -64308133 - AluJo SINE Alu -9 303 1 2143 131 0 0 chr15 37072413 37072725 -64307796 + AluSx SINE Alu 1 312 0 1890 136 0 0 chr15 37072893 37073200 -64307321 - AluSg SINE Alu 0 307 1 2105 117 3 0 chr15 37073864 37074162 -64306359 + AluSx SINE Alu 1 299 -13 887 119 33 7 chr15 37074367 37074541 -64305980 - AluSg/x SINE Alu 0 308 131 26 50 0 0 chr15 37075077 37075117 -64305404 + AT_rich Low_complexity Low_complexity 1 40 0 195 42 0 0 chr15 37075765 37075789 -64304732 + (TA)n Simple_repeat Simple_repeat 2 25 0 1640 130 0 0 chr15 37076241 37076471 -64304050 - AluSx SINE Alu -30 282 53 252 0 0 0 chr15 37077223 37077251 -64303270 + (A)n Simple_repeat Simple_repeat 1 28 0 2049 123 3 10 chr15 37077465 37077774 -64302747 + AluSc SINE Alu 1 307 -2 616 245 108 29 chr15 37080755 37080996 -64299525 - MIR SINE MIR -2 260 1 231 37 0 0 chr15 37081141 37081188 -64299333 - Alu SINE Alu 0 308 262 2114 102 7 0 chr15 37081226 37081520 -64299001 - AluSg SINE Alu -14 296 1 1067 193 107 59 chr15 37081630 37081900 -64298621 + AluJb SINE Alu 1 283 -19 1776 122 27 14 chr15 37081929 37082225 -64298296 + AluSx SINE Alu 1 300 -12 221 350 88 15 chr15 37082298 37082435 -64298086 + L2 LINE L2 2598 2744 -570 251 294 82 78 chr15 37082475 37082621 -64297900 + L2 LINE L2 3005 3149 -164 2013 120 7 0 chr15 37082621 37082913 -64297608 - AluSx SINE Alu -18 294 1 251 294 82 78 chr15 37082913 37083059 -64297462 + L2 LINE L2 3149 3298 -15 1237 161 124 22 chr15 37083799 37084072 -64296449 - AluJo SINE Alu -6 306 6 2265 76 3 13 chr15 37084261 37084563 -64295958 + AluY SINE Alu 1 299 -12 296 333 0 0 chr15 37084876 37084951 -64295570 - L1M4b LINE L1 -6260 599 525 278 135 62 10 chr15 37084951 37085015 -64295506 + AluSc SINE Alu 162 207 -92 1172 132 24 141 chr15 37085017 37085350 -64295171 + AluYb8 SINE Alu 16 309 -9 372 235 185 0 chr15 37085350 37085469 -64295052 - L1M4b LINE L1 -6708 151 11 1790 124 28 21 chr15 37085499 37085782 -64294739 - AluSg SINE Alu -25 285 1 1900 104 71 0 chr15 37085790 37086070 -64294451 - AluSp SINE Alu -13 300 1 2123 121 3 0 chr15 37086070 37086375 -64294146 - AluSp SINE Alu -5 308 3 1188 89 0 0 chr15 37086385 37086543 -64293978 - AluSg/x SINE Alu -21 289 132 2214 90 3 0 chr15 37086544 37086844 -64293677 - AluY SINE Alu -10 301 1 1359 150 37 129 chr15 37087409 37087788 -64292733 - MER2 DNA MER2_type 0 344 1 2235 76 10 0 chr15 37088025 37088315 -64292206 - AluSx SINE Alu -19 293 1 778 122 0 116 chr15 37088440 37088552 -64291969 + AluJo SINE Alu 5 98 -214 2153 118 0 0 chr15 37088552 37088848 -64291673 - AluSx SINE Alu -16 296 1 778 122 0 116 chr15 37088848 37088882 -64291639 + AluJo SINE Alu 98 134 -178 2019 125 3 0 chr15 37088994 37089291 -64291230 + AluSx SINE Alu 1 298 -14 1967 67 60 25 chr15 37089714 37089998 -64290523 + AluY SINE Alu 6 299 -12 859 194 0 18 chr15 37090001 37090171 -64290350 + AluSg/x SINE Alu 129 295 -17 2340 79 0 3 chr15 37090354 37090657 -64289864 + AluY SINE Alu 1 302 -9 2256 86 3 10 chr15 37091222 37091525 -64288996 - AluSc SINE Alu -7 302 2 1596 196 3 3 chr15 37091529 37091825 -64288696 - AluJo SINE Alu -16 296 1 2066 125 3 0 chr15 37091997 37092308 -64288213 - AluSx SINE Alu 0 312 1 638 222 0 17 chr15 37092324 37092441 -64288080 - FLAM_A SINE Alu -18 115 1 1405 196 59 28 chr15 37092563 37092849 -64287672 - AluJo SINE Alu -7 295 1 1111 147 0 11 chr15 37092908 37093085 -64287436 - AluSg/x SINE Alu -3 309 135 1841 124 10 51 chr15 37093086 37093400 -64287121 - AluSx SINE Alu -11 301 1 9617 27 5 188 chr15 37094103 37095834 -64284687 + SVA Other Other 5 1386 0 708 167 24 24 chr15 37096001 37096127 -64284394 + AluJb SINE Alu 2 127 -185 1139 184 24 0 chr15 37096244 37096456 -64284065 - AluJo SINE Alu -11 301 85 2365 74 0 0 chr15 37096501 37096800 -64283721 + AluSq SINE Alu 3 301 -12 947 105 45 0 chr15 37097058 37097191 -64283330 + AluSq/x SINE Alu 4 142 -171 543 73 0 0 chr15 37097191 37097259 -64283262 - Tigger1 DNA MER2_type -866 1552 1485 4889 103 182 54 chr15 37097264 37097361 -64283160 - Tigger1 DNA MER2_type -1273 1145 1062 1478 191 0 0 chr15 37097361 37097617 -64282904 - AluJo SINE Alu -56 256 1 4889 103 182 54 chr15 37097617 37097832 -64282689 - Tigger1 DNA MER2_type -1356 1062 876 1787 133 13 29 chr15 37097832 37098141 -64282380 - AluJb SINE Alu -8 304 1 4889 103 182 54 chr15 37098141 37098332 -64282189 - Tigger1 DNA MER2_type -1542 876 711 2009 110 10 3 chr15 37098332 37098631 -64281890 - AluSq SINE Alu -7 306 6 4889 103 182 54 chr15 37098631 37098976 -64281545 - Tigger1 DNA MER2_type -1707 711 412 2105 86 23 7 chr15 37098976 37099279 -64281242 + AluY SINE Alu 1 308 -3 4889 103 182 54 chr15 37099279 37099394 -64281127 - Tigger1 DNA MER2_type -2006 412 55 2109 114 3 0 chr15 37099415 37099714 -64280807 + AluSx SINE Alu 1 300 -12 1905 158 0 0 chr15 37099726 37100030 -64280491 + AluSx SINE Alu 1 304 -8 1868 124 13 13 chr15 37100266 37100572 -64279949 - AluSp SINE Alu -7 306 1 233 230 128 47 chr15 37100890 37101038 -64279483 + L1MC5 LINE L1 7755 7914 -47 2146 99 3 7 chr15 37101276 37101580 -64278941 + AluSc SINE Alu 1 303 -6 1296 179 120 7 chr15 37101594 37101868 -64278653 + AluSx SINE Alu 1 305 -7 284 246 0 0 chr15 37101871 37101940 -64278581 + L1MC5 LINE L1 7709 7777 -184 810 126 0 0 chr15 37101956 37102075 -64278446 - FLAM_C SINE Alu -12 131 13 397 232 0 0 chr15 37102098 37102180 -64278341 + L1MC5 LINE L1 7807 7888 -73 801 92 17 0 chr15 37102672 37102791 -64277730 + AluSg/x SINE Alu 192 312 0 2108 113 0 0 chr15 37103011 37103311 -64277210 - AluSg SINE Alu -10 300 1 1063 159 88 39 chr15 37103342 37103390 -64277131 - MER33 DNA MER1_type -2262 323 279 2018 128 7 0 chr15 37103390 37103694 -64276827 - AluSg1 SINE Alu -3 306 1 1063 159 88 39 chr15 37103694 37103794 -64276727 - MER33 DNA MER1_type -2306 279 185 2057 89 3 33 chr15 37103794 37104097 -64276424 - AluSp SINE Alu -19 294 1 2317 55 24 0 chr15 37104107 37104400 -64276121 - AluY SINE Alu -11 300 1 1063 159 88 39 chr15 37104400 37104547 -64275974 - MER33 DNA MER1_type -2408 177 1 640 152 0 0 chr15 37105045 37105137 -64275384 + AluSg/x SINE Alu 85 176 -134 219 376 144 24 chr15 37105161 37105450 -64275071 - L2 LINE L2 -2425 889 562 2095 85 20 0 chr15 37105450 37105743 -64274778 + AluSp SINE Alu 9 307 -6 1696 158 7 0 chr15 37105919 37106198 -64274323 + AluJb SINE Alu 20 300 -12 685 186 0 0 chr15 37106240 37106353 -64274168 - AluSg/x SINE Alu -11 299 187 1404 113 9 35 chr15 37106453 37106682 -64273839 + AluSp SINE Alu 88 310 -3 1844 139 14 0 chr15 37107180 37107468 -64273053 + AluSg SINE Alu 1 292 -18 719 159 0 0 chr15 37108146 37108253 -64272268 + AluSg/x SINE Alu 194 300 -10 1978 86 4 0 chr15 37108386 37108642 -64271879 + AluSp SINE Alu 37 293 -20 23 33 0 0 chr15 37108642 37108672 -64271849 + AT_rich Low_complexity Low_complexity 1 30 0 683 183 15 15 chr15 37108678 37108809 -64271712 + FLAM_C SINE Alu 2 132 -1 682 208 0 0 chr15 37109308 37109433 -64271088 + FLAM_A SINE Alu 2 126 -7 42 20 0 0 chr15 37109448 37109497 -64271024 + AT_rich Low_complexity Low_complexity 1 49 0 2195 82 0 41 chr15 37109649 37109968 -64270553 - AluY SINE Alu -5 306 1 557 165 0 0 chr15 37110102 37110187 -64270334 - AluJ/FLAM SINE Alu -225 87 3 836 204 6 23 chr15 37110585 37110597 -64269924 - AluJb SINE Alu -7 305 294 1850 138 6 58 chr15 37110597 37110923 -64269598 - AluSx SINE Alu -3 309 1 836 204 6 23 chr15 37110923 37111082 -64269439 - AluJb SINE Alu -18 294 137 2011 116 3 3 chr15 37111240 37111533 -64268988 + AluSq SINE Alu 3 295 -18 2109 100 6 10 chr15 37111658 37111969 -64268552 + AluSg SINE Alu 1 310 0 904 212 0 12 chr15 37112043 37112208 -64268313 + FRAM SINE Alu 1 163 -3 2150 117 0 0 chr15 37112250 37112559 -64267962 + AluSx SINE Alu 1 309 -3 2015 104 0 0 chr15 37112678 37112948 -64267573 - AluSg SINE Alu -40 270 1 2526 49 0 0 chr15 37112954 37113259 -64267262 - AluY SINE Alu -6 305 1 349 197 0 0 chr15 37113259 37113320 -64267201 + AluY SINE Alu 114 174 -127 908 162 14 0 chr15 37113341 37113489 -64267032 + AluJb SINE Alu 136 285 -27 237 125 50 0 chr15 37113524 37113564 -64266957 + L2 LINE L2 3266 3307 -6 2211 97 0 3 chr15 37113597 37113895 -64266626 - AluSq SINE Alu -16 297 1 235 160 0 40 chr15 37113904 37113954 -64266567 - Alu SINE Alu 0 133 86 2417 81 0 3 chr15 37114066 37114376 -64266145 - AluY SINE Alu -2 309 1 1550 140 3 101 chr15 37114385 37114548 -64265973 - AluJo SINE Alu -16 296 179 1887 138 10 7 chr15 37114548 37114845 -64265676 - AluSx SINE Alu -14 298 1 1550 140 3 101 chr15 37114845 37115009 -64265512 - AluJo SINE Alu -133 179 1 2200 92 0 10 chr15 37115479 37115784 -64264737 - AluSg SINE Alu -7 303 2 2283 84 7 7 chr15 37115787 37116096 -64264425 - AluSq SINE Alu -4 309 1 1411 181 50 7 chr15 37116099 37116380 -64264141 - AluJb SINE Alu -19 293 1 1997 119 3 3 chr15 37116385 37116680 -64263841 - AluSg SINE Alu -15 295 1 2288 79 0 13 chr15 37116773 37117078 -64263443 - AluY SINE Alu -10 301 1 1028 149 36 5 chr15 37117349 37117544 -64262977 + AluJo SINE Alu 87 287 -25 180 0 0 0 chr15 37119265 37119285 -64261236 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1787 87 97 67 chr15 37119595 37119893 -64260628 + AluSx SINE Alu 1 307 -5 1799 65 5 0 chr15 37120069 37120283 -64260238 - AluSg SINE Alu -95 215 1 993 93 0 0 chr15 37120584 37120713 -64259808 - AluJb SINE Alu -183 129 1 482 229 60 27 chr15 37120738 37120921 -64259600 + L1MC5 LINE L1 7729 7917 -44 21 0 0 0 chr15 37121104 37121125 -64259396 + AT_rich Low_complexity Low_complexity 1 21 0 213 156 47 16 chr15 37121129 37121193 -64259328 + (TA)n Simple_repeat Simple_repeat 1 66 0 182 100 0 78 chr15 37121233 37121323 -64259198 + (TA)n Simple_repeat Simple_repeat 2 84 0 287 112 21 64 chr15 37121358 37121546 -64258975 + (TA)n Simple_repeat Simple_repeat 1 180 0 309 101 38 114 chr15 37121575 37121733 -64258788 + (CTATA)n Simple_repeat Simple_repeat 2 147 0 27 96 0 0 chr15 37121761 37121844 -64258677 + AT_rich Low_complexity Low_complexity 1 83 0 2006 108 3 21 chr15 37121844 37122130 -64258391 + AluSq SINE Alu 1 281 -32 264 30 0 0 chr15 37122130 37122163 -64258358 + (TAA)n Simple_repeat Simple_repeat 1 33 0 659 294 133 8 chr15 37122252 37122507 -64258014 + L2 LINE L2 974 1260 -2054 189 0 0 0 chr15 37122514 37122535 -64257986 + (T)n Simple_repeat Simple_repeat 1 21 0 1166 269 207 55 chr15 37122659 37122837 -64257684 + L2 LINE L2 1276 1426 -1888 1817 151 6 43 chr15 37122837 37123161 -64257360 - AluJb SINE Alu 0 312 1 1166 269 207 55 chr15 37123161 37123763 -64256758 + L2 LINE L2 1426 2205 -1109 2299 115 0 6 chr15 37123763 37124077 -64256444 - AluSx SINE Alu 0 312 1 1166 269 207 55 chr15 37124077 37124169 -64256352 + L2 LINE L2 2205 2282 -1032 1052 71 169 0 chr15 37124275 37124429 -64256092 + AluSp SINE Alu 134 313 0 703 71 0 10 chr15 37124459 37124558 -64255963 - AluY SINE Alu -3 308 211 374 277 152 48 chr15 37124861 37125092 -64255429 - MIR SINE MIR -1 261 7 2194 125 0 3 chr15 37125430 37125734 -64254787 - AluSx SINE Alu -9 303 1 1296 71 0 0 chr15 37126496 37126650 -64253871 + AluSg/x SINE Alu 154 307 -5 243 204 0 0 chr15 37126786 37126835 -64253686 + L2 LINE L2 3265 3313 0 208 329 0 13 chr15 37127078 37127154 -64253367 + MER5A DNA MER1_type 1 75 -114 2360 93 0 6 chr15 37127154 37127466 -64253055 + AluY SINE Alu 1 310 -1 477 195 0 0 chr15 37127474 37127551 -64252970 + FLAM_A SINE Alu 45 121 -21 1747 171 18 3 chr15 37127835 37128121 -64252400 + AluJb SINE Alu 7 296 -16 1016 184 11 6 chr15 37128578 37128752 -64251769 + AluJb SINE Alu 1 175 -137 423 221 0 0 chr15 37128753 37128830 -64251691 + Alu SINE Alu 223 299 -11 22 56 0 0 chr15 37128842 37128878 -64251643 + AT_rich Low_complexity Low_complexity 1 36 0 1913 146 14 7 chr15 37128878 37129173 -64251348 + AluJo SINE Alu 3 299 -13 1685 114 28 0 chr15 37129180 37129435 -64251086 + AluSp SINE Alu 1 262 -51 313 267 84 0 chr15 37129547 37129678 -64250843 + MER112 DNA MER1_type 30 171 -89 205 391 33 0 chr15 37130083 37130175 -64250346 + L2 LINE L2 3182 3276 -37 2200 106 0 3 chr15 37130196 37130511 -64250010 + AluSx SINE Alu 1 314 0 2000 112 14 0 chr15 37130581 37130858 -64249663 + AluSx SINE Alu 1 281 -31 2507 64 3 0 chr15 37131178 37131476 -64249045 + AluSg1 SINE Alu 1 299 -10 1592 118 36 5 chr15 37131979 37132237 -64248284 + AluSx SINE Alu 58 322 0 1722 183 3 20 chr15 37132237 37132543 -64247978 + AluJb SINE Alu 1 301 -11 833 488 8 8 chr15 37132601 37132847 -64247674 - AluSx SINE Alu -13 299 54 352 213 0 25 chr15 37132854 37132934 -64247587 - L1M4 LINE L1 -1067 5079 5002 1171 110 7 0 chr15 37132936 37133091 -64247430 - AluSg/x SINE Alu -23 287 132 2097 110 10 7 chr15 37133091 37133382 -64247139 - AluSg1 SINE Alu -17 292 1 2307 60 18 3 chr15 37133395 37133680 -64246841 - AluY SINE Alu -20 291 3 2410 80 0 13 chr15 37133682 37133982 -64246539 - AluY SINE Alu -11 300 5 931 219 0 17 chr15 37133989 37134167 -64246354 - FAM SINE Alu 0 175 1 356 179 77 0 chr15 37134168 37134246 -64246275 - L1M4 LINE L1 -1141 5005 4922 1565 131 6 125 chr15 37134288 37134424 -64246097 + AluJb SINE Alu 1 152 -160 1626 180 7 20 chr15 37134424 37134719 -64245802 + AluJo SINE Alu 1 291 -21 1565 131 6 125 chr15 37134719 37134933 -64245588 + AluJb SINE Alu 152 309 -3 6940 55 6 42 chr15 37134969 37136203 -64244318 - SVA Other Other -520 1386 432 2526 61 0 0 chr15 37136432 37136726 -64243795 + AluY SINE Alu 2 295 -16 2384 95 10 0 chr15 37136739 37137045 -64243476 + AluY SINE Alu 2 310 -1 23 86 0 0 chr15 37137119 37137177 -64243344 + AT_rich Low_complexity Low_complexity 1 58 0 1182 255 68 98 chr15 37137209 37137324 -64243197 - L2 LINE L2 -18 3295 3178 1782 141 65 21 chr15 37137324 37137614 -64242907 + AluSq SINE Alu 1 303 -10 1182 255 68 98 chr15 37137614 37138047 -64242474 - L2 LINE L2 -135 3178 2734 2227 134 0 3 chr15 37138047 37138360 -64242161 - AluSx SINE Alu 0 312 1 1182 255 68 98 chr15 37138360 37138402 -64242119 - L2 LINE L2 -579 2734 2692 2273 119 35 22 chr15 37138402 37138772 -64241749 + THE1C LTR MaLR 1 375 0 1182 255 68 98 chr15 37138772 37139087 -64241434 - L2 LINE L2 -621 2692 2434 2351 107 0 23 chr15 37139108 37139278 -64241243 - AluSx SINE Alu -9 303 131 2264 54 50 24 chr15 37139278 37139576 -64240945 - AluY SINE Alu -5 306 1 2267 71 32 0 chr15 37139576 37139857 -64240664 - AluSc SINE Alu -19 290 1 2351 107 0 23 chr15 37139857 37139995 -64240526 - AluSx SINE Alu -179 133 1 2462 68 3 19 chr15 37140006 37140314 -64240207 - AluSp SINE Alu -4 309 7 492 78 0 65 chr15 37140608 37140685 -64239836 - Alu SINE Alu -7 303 232 912 94 0 0 chr15 37140685 37140802 -64239719 - AluSq/x SINE Alu -196 117 1 1154 173 6 0 chr15 37142368 37142564 -64237957 - AluJb SINE Alu 0 306 110 436 73 0 0 chr15 37142584 37142639 -64237882 + AluSc SINE Alu 29 83 -226 2541 59 0 0 chr15 37142641 37142944 -64237577 + AluY SINE Alu 1 303 -8 1735 112 4 0 chr15 37142944 37143177 -64237344 + AluSg/x SINE Alu 77 310 0 486 219 29 0 chr15 37143190 37143295 -64237226 - FLAM_C SINE Alu -34 109 2 909 141 0 126 chr15 37143296 37143333 -64237188 - AluJo SINE Alu -7 305 265 2090 108 38 0 chr15 37143333 37143620 -64236901 + AluSq SINE Alu 1 298 -15 909 141 0 126 chr15 37143620 37143788 -64236733 - AluJo SINE Alu -47 265 126 2250 117 0 3 chr15 37143797 37144104 -64236417 + AluSq SINE Alu 1 306 -7 2097 128 0 10 chr15 37144108 37144243 -64236278 + AluSq SINE Alu 1 136 -177 1991 114 28 3 chr15 37144243 37144532 -64235989 + AluSx SINE Alu 1 296 -16 2097 128 0 10 chr15 37144532 37144693 -64235828 + AluSq SINE Alu 136 294 -19 2823 10 0 7 chr15 37144697 37145006 -64235515 + AluYa5 SINE Alu 1 307 -4 262 135 0 0 chr15 37145006 37145043 -64235478 + AluSq SINE Alu 126 162 -141 1081 146 0 0 chr15 37145045 37145210 -64235311 + AluSg/x SINE Alu 142 306 -4 2047 103 18 0 chr15 37145216 37145488 -64235033 + AluSp SINE Alu 1 277 -36 1045 106 0 0 chr15 37145592 37145724 -64234797 - AluY SINE Alu -179 132 1 180 347 71 0 chr15 37145751 37145849 -64234672 - MIR SINE MIR -59 203 99 1983 101 44 40 chr15 37145860 37146156 -64234365 - AluSx SINE Alu -15 297 1 1263 98 0 0 chr15 37146156 37146320 -64234201 - AluSg/x SINE Alu -9 303 140 2360 79 31 0 chr15 37146323 37146614 -64233907 - AluSx SINE Alu -12 300 1 617 213 147 0 chr15 37147027 37147177 -64233344 - MIR SINE MIR -25 237 66 2580 63 0 0 chr15 37147617 37147918 -64232603 - AluSg SINE Alu -9 301 1 2247 82 32 0 chr15 37148178 37148460 -64232061 - AluSg SINE Alu -19 291 1 301 299 64 35 chr15 37148600 37148870 -64231651 + L1MC4 LINE L1 7720 8002 -40 2344 105 3 3 chr15 37148870 37149174 -64231347 - AluSp SINE Alu -9 304 1 301 299 64 35 chr15 37149174 37149217 -64231304 + L1MC4 LINE L1 8002 8042 0 2042 139 30 0 chr15 37149235 37149536 -64230985 - AluSq SINE Alu -3 310 1 685 310 205 15 chr15 37149537 37149995 -64230526 + L2 LINE L2 2772 3313 0 2184 113 0 10 chr15 37150534 37150827 -64229694 - AluSg SINE Alu -20 290 1 376 317 103 34 chr15 37151202 37151464 -64229057 + L2 LINE L2 2682 2961 -353 2276 97 3 3 chr15 37152020 37152318 -64228203 + AluSx SINE Alu 1 298 -14 231 284 39 39 chr15 37152508 37152610 -64227911 + MIR3 SINE MIR 14 115 -93 2407 100 0 0 chr15 37152766 37153067 -64227454 - AluSx SINE Alu -11 301 1 2266 85 3 36 chr15 37153083 37153390 -64227131 - AluSq SINE Alu -16 297 1 620 223 0 0 chr15 37153405 37153526 -64226995 - FLAM_A SINE Alu -10 123 3 264 239 15 0 chr15 37153534 37153601 -64226920 - MIR SINE MIR -73 189 122 454 129 0 0 chr15 37154026 37154096 -64226425 - Alu SINE Alu -7 305 236 2189 127 3 3 chr15 37154096 37154404 -64226117 - AluSg1 SINE Alu -1 308 1 2054 112 14 0 chr15 37154407 37154712 -64225809 - AluSc SINE Alu 0 309 1 1048 103 0 0 chr15 37154712 37154848 -64225673 - AluSq/x SINE Alu -177 136 1 364 304 133 58 chr15 37154910 37155255 -64225266 + L2 LINE L2 2329 2699 -615 1048 65 72 13 chr15 37155256 37155269 -64225252 + AluSq SINE Alu 122 133 -189 2330 94 0 7 chr15 37155269 37155576 -64224945 + AluSq SINE Alu 1 305 -8 1048 65 72 13 chr15 37155576 37155754 -64224767 + AluSq SINE Alu 133 322 0 970 99 8 0 chr15 37155767 37155898 -64224623 + FLAM_C SINE Alu 1 132 -11 307 315 135 37 chr15 37155902 37156197 -64224324 + L2 LINE L2 2705 3029 -243 227 226 12 48 chr15 37156518 37156602 -64223919 + (CGGGG)n Simple_repeat Simple_repeat 4 84 0 189 107 0 0 chr15 37156632 37156660 -64223861 + (CGG)n Simple_repeat Simple_repeat 3 30 0 256 312 0 54 chr15 37157751 37157844 -64222677 + MIR3 SINE MIR 8 95 -113 1055 41 57 0 chr15 37158025 37158148 -64222373 + AluSp SINE Alu 1 130 -183 2242 89 16 20 chr15 37159011 37159314 -64221207 - AluY SINE Alu -9 302 1 1053 171 0 17 chr15 37159402 37159420 -64221101 - AluSg/x SINE Alu -1 309 292 2221 100 3 7 chr15 37159420 37159721 -64220800 - AluSc SINE Alu -9 300 1 1053 171 0 17 chr15 37159721 37159883 -64220638 - AluSg/x SINE Alu -18 292 132 2167 118 0 38 chr15 37159883 37160052 -64220469 - AluSx SINE Alu -9 303 150 2261 88 10 29 chr15 37160052 37160358 -64220163 - AluY SINE Alu -11 300 1 2167 118 0 38 chr15 37160358 37160503 -64220018 - AluSx SINE Alu -162 150 1 346 165 122 139 chr15 37160503 37160618 -64219903 - MIR SINE MIR -133 129 17 436 185 0 0 chr15 37161055 37161120 -64219401 + AluJ/FLAM SINE Alu 3 67 -245 21 0 0 0 chr15 37161174 37161195 -64219326 + AT_rich Low_complexity Low_complexity 1 21 0 994 64 0 8 chr15 37161440 37161565 -64218956 + AluSg/x SINE Alu 175 298 -14 2404 86 0 3 chr15 37161601 37161903 -64218618 + AluSg SINE Alu 1 301 -9 1016 188 125 22 chr15 37161963 37162235 -64218286 - L1ME1 LINE L1 -118 6048 5749 956 208 43 29 chr15 37162342 37162549 -64217972 - AluJb SINE Alu -18 294 85 2224 99 0 3 chr15 37162571 37162906 -64217615 + AluSc SINE Alu 1 334 0 2210 119 3 0 chr15 37162915 37163209 -64217312 + AluSx SINE Alu 1 295 -17 2469 82 3 0 chr15 37163558 37163863 -64216658 + AluY SINE Alu 1 306 -5 1546 215 7 7 chr15 37163865 37164172 -64216349 + AluJo SINE Alu 1 307 -5 1492 104 5 0 chr15 37164210 37164402 -64216119 - AluSq SINE Alu -120 193 1 915 135 0 0 chr15 37164418 37164544 -64215977 - AluJb SINE Alu -186 126 1 2036 112 25 0 chr15 37164651 37164957 -64215564 - AluSq SINE Alu 0 313 1 258 310 77 52 chr15 37165346 37165501 -64215020 + L2 LINE L2 3151 3309 -4 2284 135 0 0 chr15 37165779 37166091 -64214430 - AluSq SINE Alu -1 312 1 3732 96 40 42 chr15 37166129 37166725 -64213796 - LTR61 LTR ERV1 0 595 1 1562 193 91 36 chr15 37167221 37167528 -64212993 - MLT1C LTR MaLR -3 464 124 1687 203 10 3 chr15 37167528 37167823 -64212698 + AluJb SINE Alu 1 297 -15 1562 193 91 36 chr15 37167823 37167955 -64212566 - MLT1C LTR MaLR -343 124 1 2393 87 0 3 chr15 37167968 37168266 -64212255 - AluSg SINE Alu -13 297 1 36 23 0 0 chr15 37168303 37168346 -64212175 + AT_rich Low_complexity Low_complexity 1 43 0 277 183 16 35 chr15 37168533 37168601 -64211920 - MER5A DNA MER1_type -87 102 26 244 0 0 0 chr15 37168602 37168629 -64211892 + (TTTA)n Simple_repeat Simple_repeat 2 84 0 1642 137 118 8 chr15 37168629 37168881 -64211640 - AluSg1 SINE Alu -7 302 1 1186 221 55 18 chr15 37168883 37169171 -64211350 - L1MC4 LINE L1 -476 7566 7263 1978 146 30 0 chr15 37169171 37169466 -64211055 - AluSx SINE Alu -8 304 1 1186 221 55 18 chr15 37169466 37169507 -64211014 - L1MC4 LINE L1 -779 7263 7225 204 306 49 54 chr15 37169798 37169999 -64210522 + L2 LINE L2 2796 2997 -275 673 200 9 0 chr15 37170119 37170234 -64210287 + FLAM_A SINE Alu 1 116 -17 2005 117 14 0 chr15 37170249 37170539 -64209982 + AluSx SINE Alu 1 294 -18 180 0 0 0 chr15 37170695 37170715 -64209806 + (TA)n Simple_repeat Simple_repeat 2 21 0 26 0 0 0 chr15 37170716 37170742 -64209779 + AT_rich Low_complexity Low_complexity 1 26 0 2275 68 0 7 chr15 37170761 37171056 -64209465 + AluY SINE Alu 1 293 -18 809 127 0 0 chr15 37171056 37171174 -64209347 - AluJo/FLAM SINE Alu -194 118 1 2207 96 0 0 chr15 37171186 37171488 -64209033 - AluSc SINE Alu 0 309 8 2284 86 0 6 chr15 37171689 37172002 -64208519 - AluY SINE Alu 0 311 1 265 305 79 89 chr15 37172229 37172371 -64208150 + MIR SINE MIR 12 153 -109 2025 124 0 3 chr15 37172371 37172677 -64207844 - AluSc SINE Alu -4 305 1 265 305 79 89 chr15 37172677 37172724 -64207797 + MIR SINE MIR 153 199 -63 319 200 211 11 chr15 37173015 37173110 -64207411 + MER58 DNA MER1_type 3 116 -99 1147 135 6 0 chr15 37173111 37173289 -64207232 + AluSq SINE Alu 1 179 -134 1406 103 0 5 chr15 37173390 37173584 -64206937 - AluSp SINE Alu -120 193 1 226 245 19 0 chr15 37173584 37173637 -64206884 + MER58 DNA MER1_type 2367 2420 0 1948 116 14 3 chr15 37174294 37174587 -64205934 + AluSx SINE Alu 1 296 -16 783 143 0 16 chr15 37174973 37175099 -64205422 - AluJo SINE Alu -178 134 11 2031 115 20 3 chr15 37175458 37175762 -64204759 - AluSq SINE Alu 0 313 5 1063 163 0 0 chr15 37175803 37175981 -64204540 - AluSg/x SINE Alu -17 293 116 349 191 0 0 chr15 37175981 37176044 -64204477 - AluS SINE Alu -5 295 233 1338 71 60 0 chr15 37176149 37176332 -64204189 - AluSc SINE Alu -24 285 92 884 112 51 84 chr15 37176622 37176677 -64203844 - L1MA5A LINE L1 -5 6292 6237 2287 90 0 6 chr15 37176677 37176988 -64203533 - AluSc SINE Alu 0 309 1 884 112 51 84 chr15 37176988 37177110 -64203411 - L1MA5A LINE L1 -60 6237 6121 642 187 19 0 chr15 37177128 37177235 -64203286 - FLAM_C SINE Alu -30 113 5 2103 102 30 0 chr15 37177247 37177550 -64202971 - AluSx SINE Alu 0 312 1 3704 212 101 32 chr15 37177560 37178910 -64201611 - L1M2c LINE L1 -4937 1852 92 755 161 8 0 chr15 37178917 37179035 -64201486 + FLAM_A SINE Alu 8 126 -16 574 120 87 0 chr15 37179041 37179133 -64201388 - L1M2c LINE L1 -6687 102 3 814 139 0 19 chr15 37179263 37179421 -64201100 + AluYa5 SINE Alu 127 281 -30 1238 184 0 14 chr15 37179445 37179509 -64201012 + AluSg/x SINE Alu 70 133 -177 2255 95 3 0 chr15 37179509 37179813 -64200708 + AluSx SINE Alu 1 305 -7 1238 184 0 14 chr15 37179813 37179971 -64200550 + AluSg/x SINE Alu 133 289 -21 350 148 40 50 chr15 37179973 37180074 -64200447 - MER104 DNA Tc2 -78 102 3 237 65 0 0 chr15 37180228 37180259 -64200262 + (GGA)n Simple_repeat Simple_repeat 1 31 0 2239 95 10 0 chr15 37180802 37181108 -64199413 - AluSq SINE Alu -4 309 1 518 296 228 16 chr15 37181393 37181704 -64198817 - L1ME1 LINE L1 -306 5860 5484 544 195 130 52 chr15 37181951 37182105 -64198416 - MLT1A1 LTR MaLR -198 167 2 1943 117 10 0 chr15 37182105 37182395 -64198126 - AluSc SINE Alu -16 293 1 1251 122 0 20 chr15 37182400 37182579 -64197942 - AluSg/x SINE Alu 0 310 134 1908 121 10 36 chr15 37182579 37182745 -64197776 - AluSc SINE Alu -10 299 143 2251 84 7 0 chr15 37182745 37183041 -64197480 - AluSp SINE Alu -10 303 6 1908 121 10 36 chr15 37183041 37183181 -64197340 - AluSc SINE Alu -166 143 1 1251 122 0 20 chr15 37183181 37183198 -64197323 - AluSg/x SINE Alu -176 134 118 1308 115 0 0 chr15 37183469 37183661 -64196860 + AluSq SINE Alu 116 307 -6 2021 89 3 17 chr15 37183683 37183974 -64196547 + AluSx SINE Alu 1 287 -25 2182 80 0 23 chr15 37183976 37184275 -64196246 + AluY SINE Alu 1 292 -19 32 0 0 0 chr15 37184275 37184307 -64196214 + AT_rich Low_complexity Low_complexity 1 32 0 1740 163 0 20 chr15 37184363 37184664 -64195857 + AluSx SINE Alu 1 295 -17 2391 54 0 0 chr15 37184988 37185282 -64195239 + AluY SINE Alu 1 294 -17 2208 50 50 0 chr15 37185293 37185574 -64194947 + AluY SINE Alu 1 295 -16 267 330 25 25 chr15 37185607 37185725 -64194796 - MER5B DNA MER1_type -60 118 1 392 83 0 0 chr15 37186218 37186266 -64194255 - FLAM SINE Alu -12 121 74 477 233 21 41 chr15 37186675 37186830 -64193691 + L1ME LINE L1 5514 5662 -504 461 216 39 0 chr15 37186836 37186938 -64193583 + L1 LINE L1 4218 4323 -1823 2125 108 0 0 chr15 37186939 37187234 -64193287 + AluSx SINE Alu 1 295 -17 22 35 0 0 chr15 37187240 37187269 -64193252 + GC_rich Low_complexity Low_complexity 1 29 0 2650 88 31 90 chr15 37187320 37188011 -64192510 + SVA Other Other 393 868 -555 2320 81 0 0 chr15 37188157 37188455 -64192066 + AluSx SINE Alu 1 298 -14 2200 97 3 10 chr15 37188599 37188910 -64191611 - AluY SINE Alu 0 311 3 2010 143 0 3 chr15 37189222 37189530 -64190991 - AluSx SINE Alu -5 307 1 22 56 0 0 chr15 37189648 37189684 -64190837 + AT_rich Low_complexity Low_complexity 1 36 0 2260 91 7 0 chr15 37189759 37190067 -64190454 - AluSx SINE Alu -2 310 1 2122 104 3 3 chr15 37190069 37190366 -64190155 - AluSc SINE Alu -12 297 1 2414 70 0 0 chr15 37190547 37190849 -64189672 - AluY SINE Alu -9 302 1 2146 94 0 0 chr15 37191749 37192035 -64188486 - AluY SINE Alu -15 296 11 1893 151 0 0 chr15 37192182 37192480 -64188041 + AluSx SINE Alu 1 298 -14 807 163 7 0 chr15 37193196 37193331 -64187190 + AluJ SINE Alu 1 136 -176 2429 64 0 10 chr15 37193363 37193677 -64186844 + AluY SINE Alu 1 311 0 1046 188 0 0 chr15 37193688 37193864 -64186657 + AluJ SINE Alu 124 299 -13 2107 95 3 3 chr15 37193875 37194170 -64186351 - AluSx SINE Alu -17 295 1 2319 70 0 13 chr15 37194497 37194811 -64185710 - AluY SINE Alu -1 310 1 1854 150 0 16 chr15 37195311 37195617 -64184904 - AluSx SINE Alu -11 301 1 183 277 181 24 chr15 37195772 37195855 -64184666 - MIR3 SINE MIR -5 203 108 1992 92 43 0 chr15 37195865 37196146 -64184375 + AluY SINE Alu 1 293 -18 265 186 29 71 chr15 37196232 37196302 -64184219 - MIR SINE MIR -72 190 124 2121 120 0 0 chr15 37196384 37196683 -64183838 - AluSx SINE Alu -13 299 1 26 0 0 0 chr15 37197929 37197955 -64182566 + AT_rich Low_complexity Low_complexity 1 26 0 706 151 0 0 chr15 37197966 37198072 -64182449 + AluSx SINE Alu 2 107 -205 1264 108 0 0 chr15 37198122 37198298 -64182223 + AluSx SINE Alu 104 279 -31 216 0 0 0 chr15 37198301 37198325 -64182196 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 694 101 40 0 chr15 37198325 37198424 -64182097 - U6 snRNA snRNA -3 104 2 55 0 0 15 chr15 37198427 37198472 -64182049 + AT_rich Low_complexity Low_complexity 1 46 -19 1797 151 3 0 chr15 37198472 37198764 -64181757 - AluJb SINE Alu -19 293 1 55 0 0 15 chr15 37198764 37198784 -64181737 + AT_rich Low_complexity Low_complexity 46 65 0 2012 56 0 4 chr15 37198808 37199060 -64181461 - AluY SINE Alu -7 304 54 25 0 0 0 chr15 37199075 37199100 -64181421 + AT_rich Low_complexity Low_complexity 1 25 0 749 169 0 0 chr15 37199107 37199225 -64181296 - FLAM_C SINE Alu -15 118 1 685 204 8 0 chr15 37199272 37199404 -64181117 + FLAM_A SINE Alu 6 138 -4 42 20 0 0 chr15 37199446 37199495 -64181026 + AT_rich Low_complexity Low_complexity 1 49 0 1758 185 3 0 chr15 37199497 37199805 -64180716 + AluJo SINE Alu 1 309 -3 2077 86 3 51 chr15 37199870 37200184 -64180337 + AluSx SINE Alu 1 299 -13 1787 159 3 10 chr15 37200250 37200558 -64179963 + AluJo SINE Alu 1 306 -6 841 167 0 0 chr15 37201501 37201633 -64178888 + FLAM_A SINE Alu 1 132 -1 1831 153 0 3 chr15 37201738 37202032 -64178489 + AluJb SINE Alu 1 293 -19 1911 155 0 0 chr15 37202037 37202328 -64178193 + AluJo SINE Alu 2 292 -20 1777 161 19 19 chr15 37203028 37203339 -64177182 + AluJo SINE Alu 1 311 -1 31 26 0 0 chr15 37203406 37203444 -64177077 + AT_rich Low_complexity Low_complexity 1 38 0 1947 117 26 13 chr15 37203666 37203975 -64176546 - AluSq SINE Alu 0 313 1 1493 211 66 18 chr15 37203981 37204389 -64176132 + L1MC4 LINE L1 7107 7538 -504 513 199 122 32 chr15 37204390 37204546 -64175975 - MER3 DNA MER1_type -80 129 7 2078 102 47 66 chr15 37204582 37204618 -64175903 + L1PB2 LINE L1 5755 5790 -361 2143 104 3 0 chr15 37204618 37204917 -64175604 + AluSg SINE Alu 1 300 -10 2078 102 47 66 chr15 37204917 37205107 -64175414 + L1PB2 LINE L1 5790 5974 -177 1611 140 103 0 chr15 37205107 37205379 -64175142 + AluSx SINE Alu 1 300 -12 2078 102 47 66 chr15 37205379 37205515 -64175006 + L1PB2 LINE L1 5974 6111 -40 1734 120 84 0 chr15 37205515 37205789 -64174732 + AluSq SINE Alu 1 297 -16 2209 92 0 10 chr15 37205789 37206092 -64174429 + AluY SINE Alu 1 300 -11 1911 125 28 0 chr15 37206100 37206387 -64174134 + AluSq SINE Alu 1 295 -18 2054 96 3 7 chr15 37206389 37206671 -64173850 + AluSc SINE Alu 1 281 -28 799 116 0 89 chr15 37206696 37206842 -64173679 + FLAM_C SINE Alu 2 134 -9 1980 108 37 0 chr15 37206844 37207140 -64173381 + AluSq SINE Alu 6 312 -1 298 274 94 8 chr15 37207678 37207795 -64172726 - MIR SINE MIR -38 224 98 * 539 214 68 8 chr15 37207792 37207909 -64172612 + L2 LINE L2 3190 3313 0 339 247 0 14 chr15 37207910 37207983 -64172538 - MIR SINE MIR -157 105 34 1783 120 7 7 chr15 37208084 37208360 -64172161 + AluSx SINE Alu 36 311 -1 2012 117 3 3 chr15 37208374 37208673 -64171848 + AluSx SINE Alu 1 299 -13 1605 151 28 11 chr15 37208683 37208968 -64171553 + AluJb SINE Alu 1 290 -22 2434 83 0 0 chr15 37209690 37210003 -64170518 - AluSq SINE Alu 0 313 1 1524 180 24 20 chr15 37210279 37210445 -64170076 - AluSx SINE Alu -7 295 131 2067 118 6 10 chr15 37210445 37210623 -64169898 - AluSx SINE Alu 0 312 134 2275 76 0 13 chr15 37210623 37210927 -64169594 - AluSq SINE Alu -13 300 1 2067 118 6 10 chr15 37210927 37211061 -64169460 - AluSx SINE Alu -178 134 1 2192 87 10 0 chr15 37211068 37211366 -64169155 - AluY SINE Alu -7 304 4 1524 180 24 20 chr15 37211366 37211485 -64169036 - AluSx SINE Alu -176 126 1 850 150 0 8 chr15 37211501 37211634 -64168887 - FLAM_C SINE Alu 0 133 2 233 299 111 17 chr15 37211941 37212058 -64168463 + MIR3 SINE MIR 3 130 -78 2626 155 109 71 chr15 37212350 37212548 -64167973 - L1MB8 LINE L1 -46 6132 5943 1592 167 7 7 chr15 37212548 37212829 -64167692 - AluJo SINE Alu -31 281 1 2626 155 109 71 chr15 37212829 37213248 -64167273 - L1MB8 LINE L1 -235 5943 5484 1879 159 0 13 chr15 37213248 37213556 -64166965 - AluJb SINE Alu -8 304 1 2626 155 109 71 chr15 37213556 37213615 -64166906 - L1MB8 LINE L1 -694 5484 5429 2168 117 0 0 chr15 37213615 37213924 -64166597 - AluSc SINE Alu 0 309 1 352 130 0 0 chr15 37213930 37213984 -64166537 - Alu SINE Alu -2 300 247 2131 91 34 0 chr15 37214016 37214313 -64166208 - AluSc SINE Alu -2 307 1 25 65 0 0 chr15 37214354 37214400 -64166121 + AT_rich Low_complexity Low_complexity 1 46 0 195 121 52 35 chr15 37214576 37214634 -64165887 + A-rich Low_complexity Low_complexity 2 60 0 306 0 0 0 chr15 37214708 37214742 -64165779 + (TG)n Simple_repeat Simple_repeat 2 35 0 205 206 16 16 chr15 37214847 37214910 -64165611 + CT-rich Low_complexity Low_complexity 1 63 0 * 254 60 45 75 chr15 37214897 37214964 -64165557 + (TTCCC)n Simple_repeat Simple_repeat 1 65 0 726 212 95 0 chr15 37214966 37215103 -64165418 - FAM SINE Alu -35 150 1 1828 158 0 0 chr15 37215141 37215426 -64165095 + AluSx SINE Alu 9 293 -19 239 237 0 0 chr15 37215619 37215657 -64164864 + AluJ/monomer SINE Alu 1 38 -264 1577 171 73 123 chr15 37216143 37216844 -64163677 - L1MC5 LINE L1 -76 7885 7220 350 319 35 43 chr15 37216983 37217124 -64163397 - MLT1H LTR MaLR -241 308 169 2057 123 0 0 chr15 37217207 37217507 -64163014 + AluSx SINE Alu 1 300 -12 887 151 0 0 chr15 37217517 37217656 -64162865 + AluSq/x SINE Alu 1 139 -174 2002 135 0 3 chr15 37217657 37217960 -64162561 + AluSq SINE Alu 1 302 -11 1655 127 22 19 chr15 37218267 37218535 -64161986 - AluSx SINE Alu -10 302 34 23 54 0 0 chr15 37218555 37218592 -64161929 + AT_rich Low_complexity Low_complexity 1 37 0 926 151 0 7 chr15 37218670 37218822 -64161699 - AluJb SINE Alu -161 151 1 2168 91 3 7 chr15 37218829 37219125 -64161396 - AluSx SINE Alu -17 295 1 331 191 15 0 chr15 37219131 37219199 -64161322 - L1MC/D LINE L1 -1988 5820 5752 2560 24 0 0 chr15 37219947 37220238 -64160283 - AluYa5 SINE Alu 0 311 21 291 163 0 0 chr15 37221110 37221153 -64159368 + Alu SINE Alu 1 43 -259 206 32 32 0 chr15 37221153 37221184 -64159337 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2185 97 30 0 chr15 37221189 37221489 -64159032 - AluSg SINE Alu -1 309 1 2219 113 0 0 chr15 37221497 37221808 -64158713 - AluSq SINE Alu -2 311 1 1309 173 10 51 chr15 37221808 37221986 -64158535 - AluJo SINE Alu 0 312 149 2352 67 0 25 chr15 37221986 37222302 -64158219 - AluY SINE Alu -3 308 1 1309 173 10 51 chr15 37222302 37222418 -64158103 - AluJo SINE Alu -163 149 30 2227 71 3 0 chr15 37222426 37222733 -64157788 - AluY SINE Alu 0 308 1 711 211 0 8 chr15 37222744 37222877 -64157644 - FLAM_C SINE Alu -1 132 1 292 191 0 0 chr15 37222879 37222926 -64157595 - Alu SINE Alu -17 285 239 804 129 0 71 chr15 37223027 37223167 -64157354 + AluSq SINE Alu 138 267 -46 332 245 101 82 chr15 37223173 37223332 -64157189 + MIR3 SINE MIR 35 196 -12 814 199 13 0 chr15 37224004 37224160 -64156361 - AluJb SINE Alu -18 294 137 1797 125 0 68 chr15 37224160 37224481 -64156040 - AluJb SINE Alu -2 310 12 213 253 0 108 chr15 37224973 37225056 -64155465 - MIR3 SINE MIR -54 154 81 29 78 0 0 chr15 37225692 37225756 -64154765 + GC_rich Low_complexity Low_complexity 1 64 0 23 86 0 0 chr15 37225867 37225925 -64154596 + GC_rich Low_complexity Low_complexity 1 58 0 32 26 0 0 chr15 37225976 37226015 -64154506 + GC_rich Low_complexity Low_complexity 1 39 0 207 200 0 33 chr15 37226308 37226368 -64154153 + G-rich Low_complexity Low_complexity 4 61 0 204 97 0 0 chr15 37228266 37228297 -64152224 + (CCTG)n Simple_repeat Simple_repeat 1 31 0 1583 91 5 0 chr15 37229224 37229433 -64151088 - AluSq SINE Alu -101 212 3 1188 183 23 143 chr15 37229645 37229783 -64150738 + AluYb8 SINE Alu 1 154 -154 1700 121 0 4 chr15 37229783 37230022 -64150499 + AluSx SINE Alu 8 245 -67 1188 183 23 143 chr15 37230022 37230233 -64150288 + AluYb8 SINE Alu 154 308 0 262 267 57 19 chr15 37231343 37231448 -64149073 - MIR SINE MIR -77 131 23 181 0 0 65 chr15 37231772 37231803 -64148718 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2329 95 0 0 chr15 37231860 37232165 -64148356 - AluSc SINE Alu -4 305 1 220 203 101 38 chr15 37232473 37232552 -64147969 - MIR SINE MIR -48 214 131 283 318 27 61 chr15 37232596 37232632 -64147889 + MER5A DNA MER1_type 43 79 -110 2219 107 0 3 chr15 37232632 37232941 -64147580 + AluSx SINE Alu 1 308 -4 283 318 27 61 chr15 37232941 37233052 -64147469 + MER5A DNA MER1_type 79 185 -4 192 326 87 0 chr15 37233055 37233147 -64147374 - MIR SINE MIR -146 116 17 205 200 0 18 chr15 37234168 37234223 -64146298 + C-rich Low_complexity Low_complexity 3 56 0 2034 108 0 0 chr15 37238216 37238493 -64142028 - AluSx SINE Alu -16 296 20 2169 95 7 0 chr15 37238503 37238797 -64141724 - AluSp SINE Alu -17 296 1 195 256 23 70 chr15 37238830 37238916 -64141605 + MIR3 SINE MIR 86 167 -41 324 364 27 81 chr15 37239591 37239888 -64140633 + L2 LINE L2 2959 3239 -33 1853 115 39 0 chr15 37240194 37240514 -64140007 + AluSx SINE Alu 1 331 0 467 169 0 0 chr15 37240720 37240791 -64139730 - AluSp/q SINE Alu -17 296 226 366 237 25 6 chr15 37241370 37241460 -64139061 - MER5A DNA MER1_type -48 141 43 1277 135 49 69 chr15 37241462 37241487 -64139034 - L1MA8 LINE L1 -5 6286 6262 2222 90 0 3 chr15 37241487 37241777 -64138744 + AluSg SINE Alu 1 289 -21 1277 135 49 69 chr15 37241777 37241914 -64138607 - L1MA8 LINE L1 -29 6262 6130 2242 93 0 3 chr15 37241914 37242214 -64138307 - AluSg SINE Alu -11 299 1 1277 135 49 69 chr15 37242214 37242354 -64138167 - L1MA8 LINE L1 -161 6130 5989 2125 103 7 0 chr15 37242367 37242668 -64137853 - AluSq SINE Alu -10 303 1 309 219 41 0 chr15 37242668 37242741 -64137780 - MER5A DNA MER1_type -113 76 1 229 203 0 16 chr15 37243078 37243142 -64137379 + (CCG)n Simple_repeat Simple_repeat 2 64 0 1466 57 0 0 chr15 37243378 37243554 -64136967 - AluY SINE Alu -135 176 1 594 171 23 23 chr15 37243554 37243683 -64136838 - L1MC5 LINE L1 -842 7119 6991 335 130 0 0 chr15 37243705 37243751 -64136770 + FLAM SINE Alu 76 121 -12 1681 130 22 19 chr15 37243902 37244172 -64136349 - AluSx SINE Alu -8 304 34 23 54 0 0 chr15 37244192 37244229 -64136292 + AT_rich Low_complexity Low_complexity 1 37 0 928 153 0 7 chr15 37244307 37244457 -64136064 - AluJb SINE Alu -161 151 3 2181 97 3 7 chr15 37244463 37244763 -64135758 - AluSx SINE Alu -13 299 1 318 191 15 0 chr15 37244769 37244837 -64135684 - L1MC5 LINE L1 -1988 5820 5752 2342 87 0 0 chr15 37245584 37245896 -64134625 - AluSx SINE Alu 0 312 1 1309 173 10 51 chr15 37245896 37246074 -64134447 - AluJo SINE Alu 0 312 149 2352 67 0 25 chr15 37246074 37246390 -64134131 - AluY SINE Alu -3 308 1 1309 173 10 51 chr15 37246390 37246506 -64134015 - AluJo SINE Alu -163 149 30 2227 71 3 0 chr15 37246514 37246821 -64133700 - AluY SINE Alu 0 308 1 737 203 0 8 chr15 37246832 37246965 -64133556 - FLAM_C SINE Alu -1 132 1 1547 181 0 44 chr15 37246967 37247152 -64133369 - AluJo SINE Alu -27 285 116 2103 109 23 0 chr15 37247152 37247454 -64133067 + AluY SINE Alu 1 309 -2 1547 181 0 44 chr15 37247454 37247566 -64132955 - AluJo SINE Alu -196 116 1 214 284 98 20 chr15 37248383 37248485 -64132036 + MIR SINE MIR 41 150 -58 * 274 192 39 0 chr15 37248484 37248536 -64131985 - L2 LINE L2 -2 3311 3258 578 176 0 0 chr15 37248536 37248627 -64131894 - FAM SINE Alu -78 107 17 187 294 0 0 chr15 37248762 37248813 -64131708 - MER5B DNA MER1_type -127 51 1 2055 116 10 0 chr15 37251214 37251506 -64129015 + AluSx SINE Alu 2 296 -16 2095 103 10 3 chr15 37251508 37251809 -64128712 + AluSx SINE Alu 1 303 -9 279 294 184 0 chr15 37251827 37251936 -64128585 + L2 LINE L2 3182 3310 -3 23 68 0 0 chr15 37252665 37252709 -64127812 + GC_rich Low_complexity Low_complexity 1 44 0 2007 108 24 0 chr15 37253521 37253809 -64126712 + AluY SINE Alu 15 309 -2 672 184 0 0 chr15 37253811 37253920 -64126601 - AluJo/FLAM SINE Alu -202 110 2 214 284 98 20 chr15 37254738 37254840 -64125681 + MIR SINE MIR 41 150 -58 * 274 192 39 0 chr15 37254839 37254891 -64125630 - L2 LINE L2 -2 3311 3258 578 176 0 0 chr15 37254891 37254982 -64125539 - FAM SINE Alu -78 107 17 187 294 0 0 chr15 37255117 37255168 -64125353 - MER5B DNA MER1_type -127 51 1 2055 116 10 0 chr15 37257569 37257861 -64122660 + AluSx SINE Alu 2 296 -16 2190 118 0 6 chr15 37257863 37258176 -64122345 + AluSx SINE Alu 1 311 -1 180 319 8 67 chr15 37259101 37259220 -64121301 + MIR SINE MIR 40 151 -111 2033 119 0 10 chr15 37259324 37259626 -64120895 + AluSq SINE Alu 2 300 -13 186 103 0 0 chr15 37261018 37261047 -64119474 + (TG)n Simple_repeat Simple_repeat 1 29 0 2166 104 0 0 chr15 37261542 37261830 -64118691 + AluSx SINE Alu 2 289 -23 1748 170 14 0 chr15 37263619 37263907 -64116614 - AluJb SINE Alu -20 292 1 298 244 70 12 chr15 37264827 37264913 -64115608 + MIR SINE MIR 50 140 -122 767 145 0 0 chr15 37265437 37265554 -64114967 + FLAM_C SINE Alu 1 117 -16 2209 117 0 0 chr15 37265567 37265876 -64114645 - AluSg SINE Alu -1 309 1 522 128 76 7 chr15 37267591 37267881 -64112640 + (CA)n Simple_repeat Simple_repeat 1 310 0 1726 167 0 10 chr15 37268258 37268563 -64111958 - AluJb SINE Alu -6 306 5 1863 147 7 0 chr15 37268620 37268912 -64111609 + AluSx SINE Alu 1 294 -18 1778 169 0 22 chr15 37268971 37269290 -64111231 + AluJo SINE Alu 1 312 0 1508 175 36 26 chr15 37269399 37269708 -64110813 + AluJo SINE Alu 1 312 0 1954 114 17 17 chr15 37269784 37270083 -64110438 + AluSx SINE Alu 1 299 -13 1148 165 0 5 chr15 37270565 37270771 -64109750 + AluY SINE Alu 105 309 -2 318 217 47 66 chr15 37270856 37270962 -64109559 + L1MC5 LINE L1 7810 7913 -48 2166 111 7 0 chr15 37270962 37271268 -64109253 + AluSg SINE Alu 2 309 -1 2177 107 0 0 chr15 37271291 37271581 -64108940 + AluSg SINE Alu 1 290 -20 573 221 0 0 chr15 37271701 37271846 -64108675 + (CA)n Simple_repeat Simple_repeat 2 146 0 2140 127 0 0 chr15 37272268 37272576 -64107945 - AluJb SINE Alu -2 310 3 213 139 0 0 chr15 37273185 37273228 -64107293 + (CA)n Simple_repeat Simple_repeat 1 43 0 2168 95 0 14 chr15 37273508 37273804 -64106717 - AluSg SINE Alu -2 308 17 296 116 0 11 chr15 37273835 37273890 -64106631 + Alu SINE Alu 1 40 -259 774 71 0 0 chr15 37273890 37273989 -64106532 + AluSg/x SINE Alu 205 303 -6 2123 137 0 0 chr15 37274569 37275011 -64105510 + AluSq SINE Alu 1 442 0 242 147 59 0 chr15 37275291 37275359 -64105162 - L1M4 LINE L1 -1111 5035 4964 24 0 0 0 chr15 37275544 37275568 -64104953 + AT_rich Low_complexity Low_complexity 1 24 0 269 189 34 54 chr15 37277272 37277420 -64103101 + (TATAA)n Simple_repeat Simple_repeat 3 147 0 21 0 0 0 chr15 37277478 37277499 -64103022 + AT_rich Low_complexity Low_complexity 1 21 0 3131 84 22 19 chr15 37277646 37277710 -64102811 + MER41A LTR ERV1 90 152 -402 1755 131 10 32 chr15 37277710 37278022 -64102499 - AluSx SINE Alu -7 305 1 3131 84 22 19 chr15 37278022 37278419 -64102102 + MER41A LTR ERV1 152 552 -2 341 186 0 0 chr15 37278419 37278478 -64102043 - LTR8 LTR ERV1 0 691 633 22546 227 21 35 chr15 37278509 37283730 -64096791 + HERVI LTR ERV1 2637 7784 -1 1365 224 114 39 chr15 37283733 37284097 -64096424 + LTR10A LTR ERV1 1 413 -196 2152 71 3 20 chr15 37284097 37284393 -64096128 + AluY SINE Alu 21 311 0 1365 224 114 39 chr15 37284393 37284518 -64096003 + LTR10A LTR ERV1 413 527 -82 4878 68 3 0 chr15 37284518 37285154 -64095367 - LTR8 LTR ERV1 -53 638 1 2145 104 0 3 chr15 37285227 37285526 -64094995 - AluSc SINE Alu -11 298 1 1812 162 3 3 chr15 37285589 37285892 -64094629 - AluJb SINE Alu -9 303 1 3620 150 45 13 chr15 37285953 37286075 -64094446 - MER41B LTR ERV1 0 635 518 2061 139 0 0 chr15 37286075 37286384 -64094137 + AluSx SINE Alu 1 309 -3 3620 150 45 13 chr15 37286384 37286712 -64093809 - MER41B LTR ERV1 -117 518 157 2110 109 3 3 chr15 37286712 37287015 -64093506 - AluSc SINE Alu -6 303 1 3620 150 45 13 chr15 37287015 37287178 -64093343 - MER41B LTR ERV1 -478 157 1 1750 95 8 4 chr15 37287213 37287454 -64093067 - AluSx SINE Alu -59 253 12 1877 133 11 0 chr15 37287470 37287748 -64092773 - AluSg SINE Alu -1 309 29 1653 131 109 4 chr15 37288479 37288753 -64091768 - AluSc SINE Alu -6 303 1 2271 90 7 0 chr15 37289088 37289387 -64091134 - AluSp SINE Alu -12 301 1 2416 67 0 0 chr15 37289395 37289695 -64090826 - AluY SINE Alu -11 300 1 214 350 0 21 chr15 37290420 37290563 -64089958 + GA-rich Low_complexity Low_complexity 5 144 0 337 137 0 0 chr15 37290594 37290645 -64089876 - Alu SINE Alu -12 290 240 25 65 0 0 chr15 37291310 37291356 -64089165 + GC_rich Low_complexity Low_complexity 1 46 0 2072 116 10 0 chr15 37293924 37294226 -64086295 + AluSp SINE Alu 2 306 -7 2216 86 0 41 chr15 37294363 37294678 -64085843 + AluSg1 SINE Alu 1 302 -7 862 180 67 17 chr15 37294773 37294951 -64085570 + MER5A DNA MER1_type 3 189 0 1822 175 0 3 chr15 37294991 37295294 -64085227 + AluSx SINE Alu 1 302 -10 2185 92 0 29 chr15 37295294 37295609 -64084912 + AluSg SINE Alu 1 306 -4 1913 134 11 3 chr15 37295810 37296094 -64084427 + AluJb SINE Alu 1 286 -26 516 111 0 0 chr15 37296094 37296175 -64084346 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 694 196 0 0 chr15 37296176 37296288 -64084233 - FLAM_A SINE Alu -30 112 1 2001 119 14 0 chr15 37297673 37297966 -64082555 + AluSx SINE Alu 1 297 -15 1099 122 0 53 chr15 37297966 37298155 -64082366 + AluSg/x SINE Alu 132 310 0 1458 179 17 14 chr15 37298172 37298463 -64082058 - AluJo SINE Alu -20 292 1 2206 88 7 16 chr15 37298476 37298782 -64081739 - AluSq SINE Alu -9 304 2 2099 124 3 0 chr15 37299207 37299506 -64081015 - AluSx SINE Alu -12 300 1 442 273 61 24 chr15 37300597 37300762 -64079759 + MIR SINE MIR 90 260 -2 207 304 78 49 chr15 37300792 37300894 -64079627 - MIR SINE MIR -56 206 102 2331 71 3 0 chr15 37301661 37301958 -64078563 - AluSp SINE Alu -11 302 5 2028 90 20 27 chr15 37303746 37304046 -64076475 - AluSg SINE Alu -12 298 1 24 32 0 0 chr15 37304569 37304600 -64075921 + AT_rich Low_complexity Low_complexity 1 31 0 2109 133 0 0 chr15 37304600 37304909 -64075612 - AluSg SINE Alu -1 309 1 2235 97 0 7 chr15 37304916 37305226 -64075295 - AluSg1 SINE Alu -1 308 1 1956 144 3 0 chr15 37305229 37305521 -64075000 - AluSx SINE Alu -19 293 1 1601 157 10 34 chr15 37305531 37305825 -64074696 - AluJb SINE Alu -25 287 1 2042 95 4 0 chr15 37308344 37308617 -64071904 + AluSc SINE Alu 18 291 -18 274 154 15 15 chr15 37309499 37309564 -64070957 + GA-rich Low_complexity Low_complexity 6 70 0 252 0 0 0 chr15 37310874 37310902 -64069619 + (TA)n Simple_repeat Simple_repeat 2 29 0 1654 101 0 0 chr15 37310902 37311129 -64069392 - AluSg/x SINE Alu 0 310 84 1597 149 0 53 chr15 37311139 37311296 -64069225 - AluJo SINE Alu -25 287 150 2204 87 0 13 chr15 37311296 37311596 -64068925 - AluSc SINE Alu -13 296 1 1597 149 0 53 chr15 37311596 37311719 -64068802 - AluJo SINE Alu -162 150 22 206 228 35 53 chr15 37311835 37311949 -64068572 + (TATAG)n Simple_repeat Simple_repeat 5 116 0 1876 125 4 7 chr15 37311998 37312279 -64068242 + AluSx SINE Alu 27 306 -6 368 253 52 58 chr15 37312309 37312483 -64068038 + MIR SINE MIR 34 206 -56 1905 148 13 3 chr15 37312483 37312786 -64067735 + AluSx SINE Alu 1 306 -6 1187 146 8 79 chr15 37312786 37312847 -64067674 + AluJb SINE Alu 85 149 -163 2001 96 20 33 chr15 37312847 37313149 -64067372 + AluSq SINE Alu 1 298 -15 2029 93 47 0 chr15 37313153 37313431 -64067090 + AluSq SINE Alu 6 296 -17 2184 116 0 0 chr15 37313431 37313732 -64066789 + AluSp SINE Alu 1 301 -12 1187 146 8 79 chr15 37313732 37313904 -64066617 + AluJb SINE Alu 150 307 -5 209 151 0 94 chr15 37313908 37313961 -64066560 + MIR SINE MIR 203 250 -12 554 230 74 97 chr15 37315082 37315339 -64065182 + MIR SINE MIR 11 261 -1 392 149 0 0 chr15 37316044 37316111 -64064410 + MIR SINE MIR 79 145 -117 247 206 87 65 chr15 37316748 37316840 -64063681 - MER102a DNA MER1_type -16 314 221 253 202 0 34 chr15 37316868 37316895 -64063626 + L1M4 LINE L1 4300 4326 -1820 2261 93 0 3 chr15 37316895 37317195 -64063326 + AluSq SINE Alu 1 299 -14 253 202 0 34 chr15 37317195 37317256 -64063265 + L1M4 LINE L1 4326 4385 -1761 2230 68 0 0 chr15 37317256 37317535 -64062986 + AluY SINE Alu 1 279 -32 216 0 0 0 chr15 37317538 37317562 -64062959 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 596 188 10 0 chr15 37317565 37317661 -64062860 - FRAM SINE Alu -31 145 49 451 211 49 14 chr15 37317924 37318066 -64062455 - L1MD3 LINE L1 -8 7987 7841 751 168 85 93 chr15 37318079 37318412 -64062109 + L1ME1 LINE L1 5802 6109 -57 1583 167 7 47 chr15 37318412 37318573 -64061948 - AluJb SINE Alu -24 288 143 2313 74 7 10 chr15 37318573 37318883 -64061638 - AluSq SINE Alu 0 313 5 1583 167 7 47 chr15 37318883 37319021 -64061500 - AluJb SINE Alu -169 143 1 751 168 85 93 chr15 37319021 37319047 -64061474 + L1ME1 LINE L1 6109 6134 -32 477 209 49 49 chr15 37319048 37319211 -64061310 + AluSg SINE Alu 2 164 -146 190 353 38 23 chr15 37320302 37320435 -64060086 - MIR3 SINE MIR -73 135 1 363 44 0 0 chr15 37320448 37320493 -64060028 + (TG)n Simple_repeat Simple_repeat 1 45 0 180 77 0 0 chr15 37320492 37320518 -64060003 + (CG)n Simple_repeat Simple_repeat 2 27 0 * 825 97 0 83 chr15 37322268 37322413 -64058108 + FLAM_A SINE Alu 1 133 0 213 39 0 0 chr15 37324573 37324599 -64055922 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 589 256 24 76 chr15 37325469 37325719 -64054802 - AluSg/x SINE Alu -5 305 69 1865 139 6 65 chr15 37325940 37326264 -64054257 - AluSx SINE Alu -5 307 3 2148 249 99 33 chr15 37326514 37326568 -64053953 + MER115 DNA AcHobo 17 66 -627 1980 170 0 19 chr15 37326568 37326886 -64053635 + AluJb SINE Alu 1 312 0 2148 249 99 33 chr15 37326886 37327466 -64053055 + MER115 DNA AcHobo 66 693 0 387 314 86 7 chr15 37327610 37327750 -64052771 - L2 LINE L2 -218 3054 2904 556 240 127 58 chr15 37328298 37328541 -64051980 - L2 LINE L2 -254 3059 2802 1738 151 19 55 chr15 37329713 37330025 -64050496 + AluJo SINE Alu 1 301 -11 1690 189 21 7 chr15 37330025 37330310 -64050211 + AluJo SINE Alu 1 289 -23 1493 150 6 120 chr15 37332412 37332746 -64047775 + AluJo SINE Alu 1 296 -6 25 31 0 0 chr15 37334690 37334722 -64045799 + AT_rich Low_complexity Low_complexity 1 32 0 617 279 16 16 chr15 37334975 37335165 -64045356 - MIR SINE MIR -63 199 10 2123 134 3 0 chr15 37335256 37335555 -64044966 - AluJb SINE Alu -12 300 1 2113 109 38 0 chr15 37336369 37336662 -64043859 + AluSp SINE Alu 1 304 -9 2253 118 3 0 chr15 37336734 37337030 -64043491 - AluSp SINE Alu -16 297 1 1091 88 0 7 chr15 37337030 37337166 -64043355 - AluSq/x SINE Alu -178 135 1 1546 186 16 50 chr15 37337178 37337500 -64043021 - AluJo SINE Alu -1 311 1 532 222 35 53 chr15 37337547 37337718 -64042803 + MIR SINE MIR 28 195 -67 699 135 0 0 chr15 37337722 37337826 -64042695 + FLAM_A SINE Alu 18 121 -21 1993 91 0 16 chr15 37337828 37338132 -64042389 - AluSp SINE Alu 0 334 35 1243 146 16 0 chr15 37338133 37338318 -64042203 - AluJb SINE Alu -120 192 5 2130 129 10 0 chr15 37339877 37340186 -64040335 - AluSx SINE Alu 0 312 1 367 236 146 51 chr15 37340209 37340290 -64040231 + L1ME4a LINE L1 5920 5992 -129 2557 73 0 0 chr15 37340290 37340592 -64039929 - AluY SINE Alu -8 303 2 367 236 146 51 chr15 37340592 37340688 -64039833 + L1ME4a LINE L1 5992 6114 -7 2115 113 37 10 chr15 37340765 37341065 -64039456 + AluSg SINE Alu 1 308 -2 1993 141 0 26 chr15 37341163 37341469 -64039052 - AluSx SINE Alu -14 298 1 1716 146 21 11 chr15 37341469 37341750 -64038771 + AluSx SINE Alu 24 307 -5 2360 96 0 3 chr15 37342082 37342385 -64038136 + AluSx SINE Alu 1 302 -10 259 159 0 0 chr15 37342387 37342431 -64038090 + Alu SINE Alu 1 44 -257 709 229 51 47 chr15 37342475 37342728 -64037793 - L1ME3A LINE L1 -69 6101 5848 1123 148 16 11 chr15 37342756 37342770 -64037751 + AluSq SINE Alu 121 133 -180 1961 103 37 57 chr15 37342770 37343070 -64037451 + AluSg SINE Alu 1 294 -16 1123 148 16 11 chr15 37343070 37343237 -64037284 + AluSq SINE Alu 133 303 -10 1352 151 123 53 chr15 37343384 37343535 -64036986 - AluJo SINE Alu -7 305 166 2179 91 3 17 chr15 37343535 37343833 -64036688 - AluSc SINE Alu -15 294 1 1352 151 123 53 chr15 37343833 37343966 -64036555 - AluJo SINE Alu -146 166 1 221 266 53 80 chr15 37344213 37344326 -64036195 - MIR3 SINE MIR -84 124 15 2069 99 4 0 chr15 37344629 37344892 -64035629 + AluSx SINE Alu 41 304 -8 2356 89 0 29 chr15 37344892 37345205 -64035316 + AluSg SINE Alu 1 304 -6 27 0 0 0 chr15 37345518 37345545 -64034976 + AT_rich Low_complexity Low_complexity 1 27 0 761 230 58 58 chr15 37345679 37345790 -64034731 - MIR SINE MIR -4 258 148 2518 64 3 0 chr15 37345790 37346087 -64034434 - AluSp SINE Alu -15 298 1 761 230 58 58 chr15 37346087 37346232 -64034289 - MIR SINE MIR -113 149 2 1145 185 14 5 chr15 37346336 37346552 -64033969 - MER20 DNA MER1_type -1 218 1 2076 127 13 10 chr15 37346627 37346927 -64033594 + AluSx SINE Alu 1 301 -11 2361 79 0 7 chr15 37347051 37347343 -64033178 + AluY SINE Alu 1 290 -21 197 307 40 40 chr15 37347513 37347614 -64032907 - L2 LINE L2 -15 3298 3198 650 227 130 24 chr15 37348091 37348298 -64032223 + MIR SINE MIR 34 262 0 468 224 31 118 chr15 37348579 37348687 -64031834 + MIR SINE MIR 16 91 -171 2565 58 0 10 chr15 37348687 37348998 -64031523 - AluSq SINE Alu -5 308 1 468 224 31 118 chr15 37348998 37349143 -64031378 + MIR SINE MIR 91 247 -15 236 196 0 71 chr15 37349245 37349301 -64031220 + AluSg/x SINE Alu 117 168 -134 2492 70 3 0 chr15 37349933 37350235 -64030286 - AluSx SINE Alu -9 303 1 257 324 43 22 chr15 37350803 37350942 -64029579 + L2 LINE L2 3170 3311 -2 340 185 31 0 chr15 37350967 37351032 -64029489 - MER5A DNA MER1_type 0 189 123 1795 123 0 0 chr15 37351032 37351267 -64029254 + AluSx SINE Alu 1 235 -77 22 0 0 0 chr15 37351569 37351591 -64028930 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr15 37351638 37351668 -64028853 + AT_rich Low_complexity Low_complexity 1 30 0 2226 95 18 0 chr15 37351735 37352019 -64028502 - AluSq SINE Alu -24 289 1 2377 85 0 0 chr15 37352031 37352326 -64028195 - AluY SINE Alu -16 295 1 352 197 84 0 chr15 37352326 37352397 -64028124 - MER5A DNA MER1_type -87 102 26 925 133 70 0 chr15 37352617 37352760 -64027761 - AluSx SINE Alu -159 153 1 279 217 33 0 chr15 37352760 37352820 -64027701 + MER5A DNA MER1_type 123 184 -5 1639 181 10 34 chr15 37352959 37353257 -64027264 - AluJb SINE Alu -16 296 6 2234 128 0 13 chr15 37353272 37353450 -64027071 - AluSx SINE Alu -2 310 136 2202 112 3 16 chr15 37353450 37353754 -64026767 - AluSq SINE Alu -13 300 1 2234 128 0 13 chr15 37353754 37353888 -64026633 - AluSx SINE Alu -176 136 2 1194 161 0 11 chr15 37354002 37354188 -64026333 - AluJb SINE Alu -11 301 118 1276 199 64 29 chr15 37354217 37354498 -64026023 + AluJo SINE Alu 1 291 -21 2288 108 0 0 chr15 37354498 37354793 -64025728 - AluSq SINE Alu -17 296 2 2329 36 47 4 chr15 37354803 37355081 -64025440 - AluY SINE Alu -21 290 1 3698 168 60 79 chr15 37355085 37355123 -64025398 - L1MC3 LINE L1 -224 7561 7524 210 37 0 0 chr15 37355131 37355158 -64025363 + (TATG)n Simple_repeat Simple_repeat 2 28 0 2084 142 0 0 chr15 37355158 37355445 -64025076 - AluSx SINE Alu -22 290 1 1818 164 7 17 chr15 37355445 37355743 -64024778 - AluJo SINE Alu -17 295 1 3698 168 60 79 chr15 37355743 37355879 -64024642 - L1MC3 LINE L1 -260 7525 7388 2059 133 36 7 chr15 37355879 37356181 -64024340 + AluSx SINE Alu 1 311 -1 3698 168 60 79 chr15 37356181 37356562 -64023959 - L1MC3 LINE L1 -397 7388 7001 2118 115 7 7 chr15 37356562 37356857 -64023664 - AluSx SINE Alu -17 295 1 3698 168 60 79 chr15 37356857 37356920 -64023601 - L1MC3 LINE L1 -784 7001 6938 2043 148 3 16 chr15 37356920 37357230 -64023291 - AluSx SINE Alu -6 306 1 3698 168 60 79 chr15 37357230 37357466 -64023055 - L1MC3 LINE L1 -847 6938 6721 613 188 0 8 chr15 37357466 37357616 -64022905 + FLAM_C SINE Alu 1 149 0 3698 168 60 79 chr15 37357616 37357763 -64022758 - L1MC3 LINE L1 -1064 6721 6573 2517 64 0 0 chr15 37357770 37358065 -64022456 - AluY SINE Alu -16 295 1 227 256 64 0 chr15 37358086 37358164 -64022357 + L1MC5 LINE L1 7701 7783 -178 1753 173 3 10 chr15 37358718 37359030 -64021491 + AluY SINE Alu 1 310 -1 316 217 47 66 chr15 37359115 37359221 -64021300 + L1MC5 LINE L1 7810 7913 -48 2300 111 7 0 chr15 37359221 37359527 -64020994 + AluSg SINE Alu 2 309 -1 2314 107 0 0 chr15 37359550 37359840 -64020681 + AluSg SINE Alu 1 290 -20 573 221 0 0 chr15 37359960 37360105 -64020416 + (CA)n Simple_repeat Simple_repeat 2 146 0 363 308 0 0 chr15 37360548 37360720 -64019801 + A-rich Low_complexity Low_complexity 1 172 0 358 368 18 0 chr15 37360746 37360860 -64019661 + G-rich Low_complexity Low_complexity 4 119 0 306 307 0 0 chr15 37360860 37361057 -64019464 + A-rich Low_complexity Low_complexity 1 197 0 2214 134 0 0 chr15 37361656 37361962 -64018559 - AluJb SINE Alu -4 308 3 213 139 0 0 chr15 37362571 37362614 -64017907 + (CA)n Simple_repeat Simple_repeat 1 43 0 2283 98 0 10 chr15 37362894 37363190 -64017331 - AluSg SINE Alu -2 308 16 2459 91 0 0 chr15 37363975 37364282 -64016239 + AluSg1 SINE Alu 1 307 -2 1997 92 89 0 chr15 37364477 37364758 -64015763 + AluSc SINE Alu 3 308 -1 2155 106 25 0 chr15 37365338 37365621 -64014900 - AluSx SINE Alu -22 290 1 2139 56 0 4 chr15 37365665 37365917 -64014604 - AluY SINE Alu -7 304 54 25 0 0 0 chr15 37365932 37365957 -64014564 + AT_rich Low_complexity Low_complexity 1 25 0 718 169 0 0 chr15 37365964 37366082 -64014439 - FLAM_C SINE Alu -15 118 1 418 274 121 88 chr15 37366268 37366689 -64013832 - L1MEc LINE L1 -2841 3541 831 1072 97 0 0 chr15 37366869 37367003 -64013518 - AluSq/x SINE Alu -178 134 1 23 0 0 0 chr15 37367178 37367201 -64013320 + AT_rich Low_complexity Low_complexity 1 23 0 324 291 6 109 chr15 37367603 37367778 -64012743 + HAL1 LINE L1 1046 1202 -1305 2329 116 0 3 chr15 37367974 37368285 -64012236 - AluSx SINE Alu -2 310 1 920 198 0 0 chr15 37368662 37368824 -64011697 - FAM SINE Alu -13 162 1 2320 121 0 0 chr15 37369051 37369356 -64011165 - AluSg SINE Alu -5 305 1 1242 133 38 5 chr15 37369443 37369653 -64010868 - AluSq SINE Alu -12 301 85 506 194 22 15 chr15 37370481 37370615 -64009906 - AluY SINE Alu -175 136 2 2347 52 10 3 chr15 37370616 37370904 -64009617 - AluY SINE Alu -18 293 4 434 234 22 87 chr15 37370911 37370931 -64009590 - L1MA10 LINE L1 -1 6333 6314 733 222 23 69 chr15 37370931 37371042 -64009479 - L1ME2 LINE L1 -9 6155 6057 1930 165 10 0 chr15 37371042 37371333 -64009188 - AluJb SINE Alu -18 294 1 733 222 23 69 chr15 37371333 37371437 -64009084 - L1ME2 LINE L1 -107 6057 5950 567 278 30 10 chr15 37371512 37371710 -64008811 + AluSg1 SINE Alu 2 203 -106 279 326 106 15 chr15 37372188 37372320 -64008201 - L2 LINE L2 -4 3268 3125 189 0 0 0 chr15 37372324 37372345 -64008176 + (CAATA)n Simple_repeat Simple_repeat 4 24 0 1969 165 0 0 chr15 37372586 37372883 -64007638 + AluSg SINE Alu 1 297 -13 1658 130 19 8 chr15 37373235 37373497 -64007024 + AluSg SINE Alu 46 310 0 665 255 194 29 chr15 37373497 37373898 -64006623 - MLT1H1 LTR MaLR -61 488 1 1449 154 11 148 chr15 37373899 37374021 -64006500 - L1ME2 LINE L1 -207 5957 5820 829 113 0 70 chr15 37374021 37374163 -64006358 - FLAM_C SINE Alu -1 132 1 1449 154 11 148 chr15 37374163 37374371 -64006150 - L1ME2 LINE L1 -344 5820 5707 1802 166 3 10 chr15 37374371 37374661 -64005860 + AluJo SINE Alu 2 289 -23 1449 154 11 148 chr15 37374661 37374795 -64005726 - L1ME2 LINE L1 -457 5707 5556 2069 130 13 3 chr15 37374796 37375096 -64005425 - AluSq SINE Alu -10 303 1 1101 194 0 24 chr15 37375106 37375312 -64005209 - AluJo SINE Alu -24 288 88 1198 162 24 40 chr15 37375316 37375398 -64005123 - L1ME2 LINE L1 -608 5562 5480 2252 118 10 0 chr15 37375398 37375704 -64004817 - AluSq SINE Alu -4 309 1 1198 162 24 40 chr15 37375704 37375868 -64004653 - L1ME2 LINE L1 -690 5480 5320 222 98 122 0 chr15 37376596 37376637 -64003884 + MIR SINE MIR 10 55 -207 2277 110 0 0 chr15 37376642 37376941 -64003580 - AluY SINE Alu -12 299 1 526 88 0 0 chr15 37376965 37377033 -64003488 - U3 snRNA snRNA -149 68 1 2451 90 3 0 chr15 37377094 37377405 -64003116 - AluSp SINE Alu -1 312 1 1237 223 92 3 chr15 37377468 37377608 -64002913 + L1M4 LINE L1 4517 4643 -1503 1509 176 23 12 chr15 37377608 37377864 -64002657 + AluJb SINE Alu 1 259 -53 1237 223 92 3 chr15 37377864 37378051 -64002470 + L1M4 LINE L1 4643 4873 -1273 1426 227 145 39 chr15 37378126 37378589 -64001932 + MLT1F LTR MaLR 31 542 0 477 214 36 0 chr15 37378589 37378701 -64001820 + L1M4 LINE L1 4867 4982 -1164 680 62 0 31 chr15 37378701 37378853 -64001668 - AluY SINE Alu 0 311 197 1278 159 12 123 chr15 37379584 37379735 -64000786 + AluJb SINE Alu 1 167 -135 369 0 0 0 chr15 37379735 37379776 -64000745 + (CA)n Simple_repeat Simple_repeat 2 42 0 2342 88 7 0 chr15 37379776 37380070 -64000451 + AluSg SINE Alu 1 296 -14 1278 159 12 123 chr15 37380070 37380257 -64000264 + AluJb SINE Alu 165 302 0 1361 108 4 82 chr15 37380290 37380522 -63999999 - AluJb SINE Alu -13 299 86 2052 142 0 3 chr15 37380531 37380840 -63999681 - AluSx SINE Alu -4 308 1 892 198 0 0 chr15 37380849 37381031 -63999490 - AluSg/x SINE Alu 0 312 131 1348 118 28 19 chr15 37381639 37381850 -63998671 + AluSq SINE Alu 94 306 -7 213 367 44 0 chr15 37381952 37382042 -63998479 - MER5A DNA MER1_type 0 189 96 21 57 0 0 chr15 37384289 37384324 -63996197 + AT_rich Low_complexity Low_complexity 1 35 0 440 200 36 18 chr15 37384948 37385058 -63995463 - MIR SINE MIR -44 218 107 2058 86 68 0 chr15 37385405 37385685 -63994836 + AluSp SINE Alu 2 300 -13 23 0 0 0 chr15 37385693 37385716 -63994805 + AT_rich Low_complexity Low_complexity 1 23 0 1957 128 31 0 chr15 37385716 37386005 -63994516 - AluSq SINE Alu -14 299 2 909 187 26 0 chr15 37386013 37386168 -63994353 - AluJo SINE Alu -16 296 138 1400 99 0 52 chr15 37386180 37386391 -63994130 - AluSg/x SINE Alu -6 304 105 1138 111 17 39 chr15 37386391 37386572 -63993949 - AluSq SINE Alu -136 177 1 724 188 0 0 chr15 37386577 37386710 -63993811 - AluJo SINE Alu -169 133 1 23 0 0 0 chr15 37386711 37386734 -63993787 + AT_rich Low_complexity Low_complexity 1 23 0 1706 180 7 3 chr15 37386802 37387096 -63993425 + AluJo SINE Alu 1 295 -17 239 282 64 13 chr15 37387235 37387313 -63993208 - L2 LINE L2 -4 3309 3228 1381 156 19 0 chr15 37387449 37387687 -63992834 + AluJo SINE Alu 77 318 0 1301 129 203 21 chr15 37387839 37388125 -63992396 + MER44D DNA MER2_type 2 609 0 642 206 0 0 chr15 37388219 37388345 -63992176 - FLAM_A SINE Alu -3 139 14 2332 96 0 13 chr15 37388361 37388664 -63991857 - AluSp SINE Alu -14 299 1 1893 150 34 57 chr15 37388665 37388808 -63991713 - L1MC3 LINE L1 -7 7778 7633 1532 131 18 134 chr15 37388808 37389144 -63991377 - AluSx SINE Alu -5 297 1 1893 150 34 57 chr15 37389144 37389407 -63991114 - L1MC3 LINE L1 -152 7633 7381 325 82 41 0 chr15 37389545 37389594 -63990927 - L1MC3 LINE L1 -492 7293 7243 1503 264 138 39 chr15 37390014 37390139 -63990382 - L2 LINE L2 -11 3302 3191 2219 100 20 7 chr15 37390139 37390439 -63990082 + AluSx SINE Alu 1 304 -8 1503 264 138 39 chr15 37390439 37390908 -63989613 - L2 LINE L2 -122 3191 2770 1650 101 134 11 chr15 37390908 37391176 -63989345 + AluY SINE Alu 1 301 0 1503 264 138 39 chr15 37391176 37391581 -63988940 - L2 LINE L2 -543 2770 2193 818 234 9 35 chr15 37391581 37391808 -63988713 + AluJb SINE Alu 85 305 -7 971 125 0 0 chr15 37392246 37392382 -63988139 - AluSg/x SINE Alu -13 299 164 1073 139 0 0 chr15 37392463 37392614 -63987907 - AluSq/x SINE Alu -161 151 1 860 269 142 12 chr15 37392677 37393202 -63987319 + L2 LINE L2 2709 3313 0 433 237 43 0 chr15 37393210 37393303 -63987218 - MIR SINE MIR -87 175 79 183 80 0 0 chr15 37393391 37393416 -63987105 + (TATG)n Simple_repeat Simple_repeat 4 28 0 394 206 49 0 chr15 37393946 37394048 -63986473 + AluSq/x SINE Alu 5 111 -192 535 156 33 0 chr15 37394151 37394241 -63986280 + Tigger3(Golem) DNA MER2_type 148 240 -2789 231 155 87 68 chr15 37394281 37394384 -63986137 + Tigger3(Golem) DNA MER2_type 203 307 -2722 746 176 0 0 chr15 37394417 37394536 -63985985 - FRAM SINE Alu -20 156 38 1186 160 0 10 chr15 37394553 37394781 -63985740 - AluSg/x SINE Alu 0 308 83 434 121 15 0 chr15 37394781 37394847 -63985674 - AluSg/x SINE Alu -62 247 181 355 102 0 51 chr15 37394848 37394907 -63985614 - AluY SINE Alu -169 132 77 1318 150 5 9 chr15 37394908 37395121 -63985400 - AluSx SINE Alu -100 212 1 521 151 35 12 chr15 37395128 37395214 -63985307 - MER2 DNA MER2_type -257 88 1 181 281 58 50 chr15 37395361 37395482 -63985039 - L2 LINE L2 -2941 373 252 1974 102 49 11 chr15 37396021 37396305 -63984216 - AluSx SINE Alu -17 295 1 2220 108 0 3 chr15 37396305 37396602 -63983919 - AluSx SINE Alu -3 309 14 22 0 0 0 chr15 37396616 37396638 -63983883 + AT_rich Low_complexity Low_complexity 1 22 0 1923 144 7 20 chr15 37396645 37396944 -63983577 - AluJo SINE Alu -17 295 1 599 230 20 7 chr15 37396949 37397101 -63983420 + MIR SINE MIR 67 220 -42 189 107 0 0 chr15 37397245 37397273 -63983248 + (T)n Simple_repeat Simple_repeat 1 28 0 274 287 0 23 chr15 37397394 37397481 -63983040 + CT-rich Low_complexity Low_complexity 3 87 0 2396 84 0 13 chr15 37397730 37398040 -63982481 - AluY SINE Alu -5 306 1 2232 110 3 0 chr15 37398719 37399009 -63981512 - AluSg SINE Alu -19 291 1 3291 183 38 8 chr15 37399018 37399680 -63980841 - L1MB8 LINE L1 -1 6177 5496 2239 117 0 0 chr15 37399680 37399980 -63980541 - AluSc SINE Alu -9 300 1 434 281 66 29 chr15 37400001 37400243 -63980278 - AluJo SINE Alu -24 288 38 431 119 0 0 chr15 37401001 37401060 -63979461 - AluS SINE Alu -249 60 2 557 247 30 12 chr15 37401060 37401226 -63979295 - L1MB8 LINE L1 -1036 5110 4942 256 170 38 0 chr15 37401250 37401303 -63979218 - L1MB8 LINE L1 -1186 4960 4906 841 134 0 15 chr15 37401430 37401564 -63978957 + FLAM_C SINE Alu 11 142 -1 1940 125 30 23 chr15 37401567 37401870 -63978651 + AluSx SINE Alu 1 305 -7 311 336 30 15 chr15 37401907 37402038 -63978483 - MIR3 SINE MIR -9 199 67 4380 173 50 20 chr15 37402051 37402501 -63978020 - Cheshire DNA MER1_type 0 2420 1985 2095 112 21 0 chr15 37402501 37402787 -63977734 + AluSx SINE Alu 1 292 -20 4380 173 50 20 chr15 37402787 37403304 -63977217 - Cheshire DNA MER1_type -435 1985 1424 890 211 14 14 chr15 37403310 37403528 -63976993 - Cheshire DNA MER1_type -1569 851 634 1744 117 95 11 chr15 37403533 37403807 -63976714 - AluSx SINE Alu -6 306 10 680 121 0 0 chr15 37403810 37403901 -63976620 + AluSg/x SINE Alu 190 280 -32 316 229 12 24 chr15 37403920 37404003 -63976518 + Tigger5 DNA MER2_type 2242 2323 0 235 286 14 14 chr15 37404296 37404366 -63976155 - Charlie4 DNA MER1_type -4 1957 1888 245 314 86 19 chr15 37405302 37405407 -63975114 - L2 LINE L2 -4 3268 3157 608 219 104 26 chr15 37405409 37405601 -63974920 + MIR SINE MIR 5 211 -51 769 303 121 26 chr15 37405612 37406222 -63974299 - L2 LINE L2 -109 3204 2527 2263 102 7 3 chr15 37406295 37406588 -63973933 + AluSg1 SINE Alu 1 294 -15 2189 99 0 3 chr15 37406862 37407174 -63973347 - AluSx SINE Alu 0 311 1 1201 180 13 42 chr15 37407324 37407563 -63972958 - AluJo SINE Alu -52 260 29 205 247 136 12 chr15 37407712 37407793 -63972728 + L2 LINE L2 3214 3304 -9 2306 103 0 6 chr15 37408004 37408316 -63972205 + AluSx SINE Alu 1 310 -2 1289 131 5 40 chr15 37408437 37408659 -63971862 + AluJo SINE Alu 95 308 -4 815 196 89 13 chr15 37409575 37409733 -63970788 - AluJo SINE Alu -142 170 1 1219 149 128 79 chr15 37409942 37410084 -63970437 + MER2 DNA MER2_type 1 135 -209 2125 127 19 7 chr15 37410084 37410392 -63970129 - AluSx SINE Alu 0 312 1 1219 149 128 79 chr15 37410392 37410577 -63969944 + MER2 DNA MER2_type 135 344 0 237 265 118 0 chr15 37410883 37410951 -63969570 - L2 LINE L2 0 3272 3197 183 347 84 0 chr15 37411060 37411155 -63969366 - L2 LINE L2 -192 3080 2978 328 40 40 0 chr15 37411238 37411288 -63969233 + (TC)n Simple_repeat Simple_repeat 1 52 0 1411 164 0 68 chr15 37411288 37411568 -63968953 - AluJo SINE Alu -39 273 13 1682 146 13 62 chr15 37411690 37411999 -63968522 - AluJo SINE Alu -18 294 1 2344 105 0 6 chr15 37412261 37412575 -63967946 - AluSx SINE Alu 0 312 1 183 42 0 0 chr15 37412590 37412614 -63967907 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1682 126 95 4 chr15 37418392 37418690 -63961831 - AluSx SINE Alu 0 322 1 1559 160 94 25 chr15 37420312 37420587 -63959934 - AluJb SINE Alu -18 294 1 778 120 58 10 chr15 37420607 37420798 -63959723 - L1MB7 LINE L1 -16 6168 5894 1149 188 96 32 chr15 37420832 37421114 -63959407 - AluJo SINE Alu -2 300 1 755 173 20 20 chr15 37421370 37421520 -63959001 + L1PA16 LINE L1 6015 6164 -2 590 259 135 82 chr15 37421534 37422121 -63958400 - L1MC4a LINE L1 -1893 5915 5298 2120 122 3 0 chr15 37422167 37422461 -63958060 - AluSx SINE Alu -13 299 5 817 176 0 0 chr15 37422474 37422599 -63957922 - AluSq/x SINE Alu -187 125 1 2046 155 0 0 chr15 37422718 37423022 -63957499 - AluSx SINE Alu -7 305 2 324 163 0 2 chr15 37425128 37425185 -63955336 + MER2 DNA MER2_type 6 61 -178 780 194 184 0 chr15 37425210 37425411 -63955110 + L1MA9 LINE L1 5815 6052 -260 2439 52 0 3 chr15 37425435 37425725 -63954796 - AluY SINE Alu -22 289 1 388 235 0 0 chr15 37425975 37426056 -63954465 - MER2 DNA MER2_type -264 81 1 2302 91 0 16 chr15 37426239 37426548 -63953973 - AluSx SINE Alu -8 304 1 1653 203 3 3 chr15 37427078 37427374 -63953147 - AluJb SINE Alu -16 296 1 459 207 11 0 chr15 37427662 37427749 -63952772 + MER58 DNA MER1_type 128 2420 0 225 0 0 0 chr15 37427786 37427811 -63952710 + (CA)n Simple_repeat Simple_repeat 1 25 0 2225 135 0 0 chr15 37428125 37428437 -63952084 - AluSx SINE Alu 0 312 1 2315 114 0 6 chr15 37428449 37428764 -63951757 - AluSq SINE Alu 0 313 1 2026 130 7 0 chr15 37428825 37429109 -63951412 - AluSx SINE Alu -26 286 1 1946 160 3 7 chr15 37429117 37429417 -63951104 - AluSx SINE Alu -13 299 1 2276 107 0 3 chr15 37429429 37429737 -63950784 - AluSc SINE Alu -2 307 1 506 274 46 6 chr15 37429956 37430131 -63950390 - L1ME LINE L1 -400 5762 5581 520 260 62 44 chr15 37430134 37430361 -63950160 + L1M4 LINE L1 4797 5027 -1119 230 220 73 18 chr15 37430419 37430528 -63949993 - L1MB8 LINE L1 0 6178 6064 467 266 79 14 chr15 37431212 37431351 -63949170 - L2 LINE L2 -4 3268 3121 381 121 0 15 chr15 37431453 37431519 -63949002 + L1PA8 LINE L1 6100 6164 -8 1565 166 30 30 chr15 37431568 37431869 -63948652 + AluJo SINE Alu 1 301 -11 686 184 0 50 chr15 37432073 37432214 -63948307 + AluJb SINE Alu 162 295 -17 273 274 68 14 chr15 37432237 37432383 -63948138 + HAL1 LINE L1 1383 1536 -971 337 304 13 59 chr15 37432552 37432654 -63947867 + HAL1 LINE L1 1681 1786 -721 2239 119 0 0 chr15 37432654 37432964 -63947557 + AluSx SINE Alu 1 310 -2 337 304 13 59 chr15 37432964 37433098 -63947423 + HAL1 LINE L1 1786 1906 -601 564 294 86 80 chr15 37433172 37433222 -63947299 + HAL1 LINE L1 1938 1986 -521 2254 108 3 0 chr15 37433222 37433519 -63947002 + AluSp SINE Alu 5 302 -11 564 294 86 80 chr15 37433519 37433685 -63946836 + HAL1 LINE L1 1986 2150 -357 1951 156 7 0 chr15 37433685 37433980 -63946541 + AluJb SINE Alu 1 297 -15 564 294 86 80 chr15 37433980 37434310 -63946211 + HAL1 LINE L1 2150 2488 -19 1211 256 68 96 chr15 37434331 37434998 -63945523 + MER21B LTR ERV1 24 671 -192 313 300 27 18 chr15 37435319 37435429 -63945092 + L1MC/D LINE L1 4745 4855 -1291 250 257 0 14 chr15 37435437 37435511 -63945010 + L1M2 LINE L1 5367 5439 -852 980 230 141 17 chr15 37435679 37435796 -63944725 + L1M3 LINE L1 4501 4602 -1544 2116 112 0 32 chr15 37435796 37436108 -63944413 + AluSg SINE Alu 1 302 -8 980 230 141 17 chr15 37436108 37436351 -63944170 + L1M3 LINE L1 4602 4906 -1240 2236 98 0 10 chr15 37436359 37436654 -63943867 - AluSg SINE Alu -16 294 3 406 159 0 0 chr15 37437411 37437480 -63943041 - AluS SINE Alu -241 69 1 2076 182 88 13 chr15 37437480 37437578 -63942943 + L1M3 LINE L1 4892 4981 -1202 2343 95 0 0 chr15 37437578 37437873 -63942648 + AluSx SINE Alu 6 300 -12 2076 182 88 13 chr15 37437873 37438524 -63941997 + L1M3 LINE L1 4981 5703 -480 1889 139 7 7 chr15 37438524 37438819 -63941702 + AluSx SINE Alu 1 295 -17 2076 182 88 13 chr15 37438819 37438893 -63941628 + L1M3 LINE L1 5703 5770 -413 388 262 81 34 chr15 37438917 37439066 -63941455 - L2 LINE L2 -545 2769 2614 369 303 100 25 chr15 37439100 37439341 -63941180 + L1MC/D LINE L1 5513 5771 -2037 1664 120 102 0 chr15 37439510 37439776 -63940745 + AluSg SINE Alu 1 293 -17 192 324 70 0 chr15 37439901 37439972 -63940549 + L3 LINE CR1 1141 1216 -361 183 304 89 0 chr15 37440082 37440161 -63940360 + L3 LINE CR1 1215 1300 -277 1629 188 3 19 chr15 37440287 37440601 -63939920 + AluJo SINE Alu 1 309 -3 1248 214 38 19 chr15 37440628 37440941 -63939580 + L1ME LINE L1 5458 5776 -386 1610 143 26 75 chr15 37441065 37441372 -63939149 + AluJb SINE Alu 1 292 -20 1006 248 59 8 chr15 37441382 37441773 -63938748 - L1MDa LINE L1 -2048 4492 4082 699 252 79 46 chr15 37442038 37442367 -63938154 + MER58B DNA MER1_type 2 341 0 228 255 78 10 chr15 37442368 37442470 -63938051 - L1MDa LINE L1 -3084 3456 3348 1438 263 79 24 chr15 37442475 37442919 -63937602 - L1MDa LINE L1 -3317 3223 2805 1846 144 25 3 chr15 37442919 37443204 -63937317 - AluSx SINE Alu -21 291 1 1438 263 79 24 chr15 37443204 37443581 -63936940 - L1MDa LINE L1 -3735 2805 2348 992 195 119 50 chr15 37443585 37443928 -63936593 - MLT1A2 LTR MaLR -7 367 1 487 230 14 0 chr15 37444133 37444272 -63936249 + CT-rich Low_complexity Low_complexity 1 141 0 1952 141 0 0 chr15 37444388 37444658 -63935863 - AluSx SINE Alu 0 312 43 2096 146 43 73 chr15 37444723 37445256 -63935265 - L1MB8 LINE L1 0 6178 5662 2781 203 20 62 chr15 37445260 37445407 -63935114 - L1MB8 LINE L1 -1237 4909 4757 1637 168 0 77 chr15 37445407 37445717 -63934804 + AluJo SINE Alu 1 286 -26 2781 203 20 62 chr15 37445717 37446453 -63934068 - L1MB8 LINE L1 -1389 4757 4063 520 276 70 35 chr15 37446495 37446934 -63933587 - L1MDa LINE L1 -4766 1774 1317 207 0 0 0 chr15 37446934 37446957 -63933564 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 520 276 70 35 chr15 37446957 37446977 -63933544 - L1MDa LINE L1 -5223 1317 1299 2075 108 52 3 chr15 37447546 37447832 -63932689 - AluSx SINE Alu -12 300 1 781 151 0 16 chr15 37447848 37447974 -63932547 - AluSq/x SINE Alu -188 124 1 2546 24 0 0 chr15 37447992 37448285 -63932236 - L1PA3 LINE L1 0 6155 5863 1988 116 65 0 chr15 37448970 37449245 -63931276 + AluSg SINE Alu 1 293 -17 819 196 0 40 chr15 37449310 37449359 -63931162 - AluJo/FRAM SINE Alu 0 302 253 2344 52 49 0 chr15 37449359 37449646 -63930875 - AluY SINE Alu -10 301 1 819 196 0 40 chr15 37449646 37449769 -63930752 - AluJo/FRAM SINE Alu -49 253 137 2231 107 3 0 chr15 37450022 37450321 -63930200 - AluSc SINE Alu -9 300 1 297 157 0 101 chr15 37450558 37450647 -63929874 + L1MB5 LINE L1 6086 6165 -9 2106 140 3 0 chr15 37452242 37452550 -63927971 - AluSx SINE Alu -3 309 1 2217 103 0 7 chr15 37452703 37453004 -63927517 - AluY SINE Alu -12 299 1 2203 102 10 0 chr15 37453006 37453299 -63927222 - AluSc SINE Alu -13 296 1 240 226 0 29 chr15 37454010 37454112 -63926409 + T-rich Low_complexity Low_complexity 5 103 0 1966 56 8 16 chr15 37454344 37454596 -63925925 - AluY SINE Alu -23 288 39 2393 74 47 44 chr15 37454763 37454876 -63925645 - L1PA8 LINE L1 -3 6169 6058 2477 59 7 7 chr15 37454876 37455180 -63925341 - AluY SINE Alu -7 304 1 2393 74 47 44 chr15 37455180 37455430 -63925091 - L1PA8 LINE L1 -114 6058 5805 22 0 0 0 chr15 37455970 37455992 -63924529 + AT_rich Low_complexity Low_complexity 1 22 0 220 246 18 0 chr15 37455993 37456050 -63924471 + CT-rich Low_complexity Low_complexity 2 59 0 295 262 30 18 chr15 37456062 37456226 -63924295 - HAL1b LINE L1 -510 838 673 237 238 131 82 chr15 37456357 37456563 -63923958 - MER102a DNA MER1_type -37 293 78 253 85 21 0 chr15 37456945 37456992 -63923529 + Alu SINE Alu 251 298 -4 2475 162 140 58 chr15 37457525 37458198 -63922323 - L1MC3 LINE L1 -11 7774 7047 1427 111 15 0 chr15 37458215 37458413 -63922108 + AluSg/x SINE Alu 101 301 -11 1662 173 9 31 chr15 37458449 37458767 -63921754 - AluJb SINE Alu -1 311 1 517 196 116 0 chr15 37458873 37458985 -63921536 - FLAM_A SINE Alu -8 125 1 2419 76 3 0 chr15 37459032 37459336 -63921185 + AluY SINE Alu 1 305 -6 459 149 0 14 chr15 37459848 37459922 -63920599 - AluS SINE Alu -240 73 1 1599 208 0 14 chr15 37460021 37460305 -63920216 - AluJb SINE Alu -18 294 15 246 243 159 0 chr15 37460413 37460507 -63920014 - MIR SINE MIR -64 144 37 2425 81 0 0 chr15 37460614 37460910 -63919611 + AluSg SINE Alu 1 296 -14 334 202 0 39 chr15 37461006 37461083 -63919438 - FRAM/FAM SINE Alu -103 63 1 2054 139 23 0 chr15 37461229 37461531 -63918990 - AluSx SINE Alu -3 309 1 1140 215 51 0 chr15 37461807 37462044 -63918477 - MLT1E LTR MaLR -3 590 342 495 252 14 28 chr15 37462089 37462232 -63918289 - MLT1E LTR MaLR -452 141 1 2144 116 0 3 chr15 37462971 37463272 -63917249 - AluSq SINE Alu -9 304 5 1783 140 3 14 chr15 37463720 37464005 -63916516 + AluJb SINE Alu 1 282 -30 1550 186 32 0 chr15 37464114 37464393 -63916128 - AluJb SINE Alu -24 288 1 2136 101 7 20 chr15 37464472 37464778 -63915743 - AluSp SINE Alu -5 308 7 581 242 0 8 chr15 37465091 37465223 -63915298 - FLAM_C SINE Alu -1 132 2 2147 134 3 0 chr15 37466353 37466652 -63913869 - AluSx SINE Alu -12 300 1 30 59 0 0 chr15 37466734 37466785 -63913736 + AT_rich Low_complexity Low_complexity 1 51 0 1433 149 90 30 chr15 37466883 37467175 -63913346 - AluJo SINE Alu 0 308 1 782 217 114 0 chr15 37467345 37467529 -63912992 - MER58A DNA MER1_type -1 223 19 222 230 0 68 chr15 37468069 37468143 -63912378 + GA-rich Low_complexity Low_complexity 2 70 0 1303 195 46 19 chr15 37469187 37469449 -63911072 - AluSx SINE Alu -39 273 5 514 107 13 0 chr15 37469582 37469657 -63910864 - AluSg SINE Alu -205 105 30 25 0 0 0 chr15 37469703 37469728 -63910793 + AT_rich Low_complexity Low_complexity 1 25 0 27 0 0 0 chr15 37469891 37469918 -63910603 + AT_rich Low_complexity Low_complexity 1 27 0 2376 68 0 23 chr15 37470404 37470712 -63909809 + AluY SINE Alu 1 301 -10 25 31 0 0 chr15 37471053 37471085 -63909436 + AT_rich Low_complexity Low_complexity 1 32 0 282 233 151 62 chr15 37471204 37471387 -63909134 - MIR SINE MIR -39 223 17 1413 275 103 2 chr15 37471607 37472200 -63908321 + L1M4 LINE L1 3212 3864 -2282 355 62 0 0 chr15 37472221 37472269 -63908252 + Alu SINE Alu 251 298 -4 328 188 0 21 chr15 37472484 37472580 -63907941 + (TA)n Simple_repeat Simple_repeat 1 94 0 1927 251 68 25 chr15 37472944 37473690 -63906831 + L1M4 LINE L1 3923 4700 -1446 1917 157 0 7 chr15 37473697 37473991 -63906530 + AluJb SINE Alu 1 292 -20 718 294 58 48 chr15 37474234 37474491 -63906030 + L1ME3A LINE L1 4561 4814 -1332 1585 157 24 24 chr15 37474491 37474784 -63905737 + AluJo SINE Alu 1 293 -19 1939 123 25 4 chr15 37474788 37475064 -63905457 + AluSx SINE Alu 1 304 0 199 0 0 0 chr15 37475064 37475086 -63905435 + (TAAAA)n Simple_repeat Simple_repeat 2 90 0 718 294 58 48 chr15 37475086 37475360 -63905161 + L1ME3A LINE L1 4816 5103 -1043 2204 125 0 0 chr15 37475424 37475720 -63904801 + AluSx SINE Alu 1 296 -16 1153 272 134 11 chr15 37475744 37476361 -63904160 + L1ME3A LINE L1 5254 5946 -224 2569 62 0 0 chr15 37476361 37476667 -63903854 - AluY SINE Alu -5 306 1 244 237 171 13 chr15 37476770 37476922 -63903599 + L1ME3A LINE L1 5988 6163 -7 1569 189 21 11 chr15 37477665 37477951 -63902570 - AluJo SINE Alu -23 289 1 25 31 0 0 chr15 37478488 37478520 -63902001 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr15 37478655 37478677 -63901844 + (T)n Simple_repeat Simple_repeat 1 22 0 189 0 0 0 chr15 37478855 37478876 -63901645 + (T)n Simple_repeat Simple_repeat 1 21 0 30 45 0 0 chr15 37478914 37478958 -63901563 + GC_rich Low_complexity Low_complexity 1 44 0 29 0 0 0 chr15 37478958 37478987 -63901534 + AT_rich Low_complexity Low_complexity 1 29 0 294 296 121 34 chr15 37479301 37479507 -63901014 + L2 LINE L2 3090 3313 0 707 188 59 70 chr15 37479530 37479716 -63900805 + AluJb SINE Alu 110 293 -19 715 198 0 0 chr15 37480210 37480336 -63900185 + FLAM_A SINE Alu 1 126 -7 702 162 113 21 chr15 37480421 37480563 -63899958 + AluJb SINE Alu 139 293 -19 2593 0 0 7 chr15 37480570 37480903 -63899618 + AluYa5 SINE Alu 1 331 0 239 154 154 0 chr15 37480994 37481059 -63899462 - L1MA8 LINE L1 -11 6280 6206 571 214 107 78 chr15 37481185 37481428 -63899093 + MIR SINE MIR 13 262 0 1980 157 3 3 chr15 37481465 37481764 -63898757 + AluSx SINE Alu 1 299 -13 711 272 96 23 chr15 37481768 37482029 -63898492 + L2 LINE L2 3033 3312 -1 2298 93 0 3 chr15 37483066 37483368 -63897153 + AluSx SINE Alu 1 301 -11 2137 156 57 7 chr15 37483368 37483773 -63896748 - Tigger2a DNA MER2_type -9 425 1 582 148 312 5 chr15 37483774 37483963 -63896558 + MER5C DNA MER1_type 78 324 0 1778 159 0 43 chr15 37484558 37484860 -63895661 + AluSx SINE Alu 1 289 -23 1366 136 5 9 chr15 37485642 37485862 -63894659 + AluSq SINE Alu 81 299 -14 412 258 226 43 chr15 37487325 37487511 -63893010 - MIR SINE MIR -24 238 19 2227 97 3 3 chr15 37487546 37487854 -63892667 - AluY SINE Alu -3 308 1 243 268 0 56 chr15 37488072 37488143 -63892378 + MIR SINE MIR 196 262 0 343 26 53 158 chr15 37488320 37488363 -63892158 + MER41B LTR ERV1 480 513 -122 2023 137 7 0 chr15 37488363 37488663 -63891858 - AluSx SINE Alu -10 302 1 343 26 53 158 chr15 37488663 37488695 -63891826 + MER41B LTR ERV1 513 547 -88 1716 171 30 3 chr15 37489316 37489614 -63890907 - AluJb SINE Alu -6 306 1 2327 75 10 3 chr15 37491497 37491789 -63888732 + AluSc SINE Alu 1 294 -15 36 0 0 0 chr15 37493190 37493226 -63887295 + AT_rich Low_complexity Low_complexity 1 36 0 1267 137 0 118 chr15 37493226 37493496 -63887025 - AluY SINE Alu -73 238 1 2121 120 10 0 chr15 37493740 37494031 -63886490 + AluSx SINE Alu 1 294 -18 2267 91 14 0 chr15 37494160 37494447 -63886074 + AluSg SINE Alu 1 291 -19 29 0 0 0 chr15 37496462 37496491 -63884030 + AT_rich Low_complexity Low_complexity 1 29 0 28 79 0 0 chr15 37496599 37496662 -63883859 + AT_rich Low_complexity Low_complexity 1 63 0 2539 66 0 0 chr15 37497108 37497413 -63883108 + AluSc SINE Alu 1 305 -4 2158 110 0 10 chr15 37497753 37498052 -63882469 - AluSg SINE Alu -14 296 1 2353 99 0 7 chr15 37498148 37498451 -63882070 + AluSp SINE Alu 2 302 -11 21 71 0 0 chr15 37499866 37499908 -63880613 + AT_rich Low_complexity Low_complexity 1 42 0 216 158 0 0 chr15 37500219 37500257 -63880264 + (TA)n Simple_repeat Simple_repeat 1 38 0 1143 143 0 0 chr15 37500257 37500418 -63880103 - AluSg/x SINE Alu -23 289 129 261 245 66 9 chr15 37500801 37500907 -63879614 + MER113 DNA MER1_type? 4 115 -406 1986 118 7 20 chr15 37500925 37501231 -63879290 - AluSg SINE Alu -8 302 1 740 21 0 0 chr15 37501259 37501352 -63879169 + SVA Other Other 1294 1386 0 349 267 72 46 chr15 37501365 37501560 -63878961 + MER113 DNA MER1_type? 158 357 -164 41 36 0 0 chr15 37501610 37501665 -63878856 + AT_rich Low_complexity Low_complexity 1 55 0 1664 191 0 3 chr15 37501674 37501956 -63878565 - AluJo SINE Alu -31 281 1 2409 81 0 13 chr15 37502309 37502617 -63877904 + AluSx SINE Alu 1 304 -8 838 166 40 20 chr15 37503104 37503255 -63877266 + FRAM SINE Alu 6 159 -17 1827 165 0 10 chr15 37503259 37503550 -63876971 + AluSx SINE Alu 1 288 -24 523 180 16 49 chr15 37506279 37506401 -63874120 - MER58B DNA MER1_type 0 341 224 2164 103 3 20 chr15 37506427 37506728 -63873793 + AluSq SINE Alu 3 298 -15 1418 115 14 5 chr15 37507024 37507233 -63873288 - AluSg/x SINE Alu -20 292 82 2249 94 7 13 chr15 37507533 37507842 -63872679 - AluSx SINE Alu -5 307 1 1492 130 0 5 chr15 37508113 37508329 -63872192 + AluSx SINE Alu 2 216 -96 1788 149 10 13 chr15 37508894 37509196 -63871325 - AluJo SINE Alu -4 308 8 469 304 106 20 chr15 37509739 37509972 -63870549 + MIR SINE MIR 3 256 -6 493 305 146 18 chr15 37510798 37511293 -63869228 + L1ME LINE L1 5257 5814 -348 824 170 0 7 chr15 37511364 37511499 -63869022 - AluJo SINE Alu -178 134 1 1544 187 39 3 chr15 37511844 37512149 -63868372 - MER2 DNA MER2_type -28 317 2 406 237 158 36 chr15 37513864 37514117 -63866404 + HAL1 LINE L1 2167 2450 -57 225 0 0 0 chr15 37514124 37514149 -63866372 + (TG)n Simple_repeat Simple_repeat 2 26 0 713 203 8 8 chr15 37514155 37514288 -63866233 - FLAM_C SINE Alu 0 133 1 392 335 39 39 chr15 37514758 37514961 -63865560 - L2 LINE L2 -559 2755 2553 1498 150 21 108 chr15 37515421 37515754 -63864767 - AluYb8 SINE Alu -12 306 3 2010 128 29 10 chr15 37517147 37517474 -63863047 - AluSx SINE Alu 0 333 1 2581 55 0 7 chr15 37517798 37518106 -63862415 - AluY SINE Alu -5 306 1 2193 110 4 0 chr15 37518167 37518477 -63862044 + AluSp SINE Alu 1 311 0 2051 135 0 10 chr15 37518581 37518885 -63861636 + AluSx SINE Alu 1 301 -11 2433 70 0 0 chr15 37518958 37519258 -63861263 - AluY SINE Alu -11 300 1 1675 124 48 45 chr15 37519259 37519549 -63860972 - AluJb SINE Alu -21 291 1 180 0 0 0 chr15 37524008 37524028 -63856493 + (T)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr15 37524509 37524532 -63855989 + AT_rich Low_complexity Low_complexity 1 23 0 2381 76 0 7 chr15 37525550 37525853 -63854668 - AluY SINE Alu -10 301 1 223 215 56 65 chr15 37526193 37526308 -63854213 + L2 LINE L2 3196 3272 0 1388 146 176 23 chr15 37526570 37526871 -63853650 - MER7A DNA MER2_type -1 345 1 2366 89 10 0 chr15 37527056 37527358 -63853163 + AluSc SINE Alu 1 305 -4 282 331 59 29 chr15 37530320 37530456 -63850065 + MIR SINE MIR 41 180 -82 355 244 133 124 chr15 37531549 37531769 -63848752 - L2 LINE L2 0 3272 3047 2356 103 0 0 chr15 37531769 37532070 -63848451 + AluSg SINE Alu 1 301 -9 355 244 133 124 chr15 37532070 37532164 -63848357 - L2 LINE L2 -225 3047 2955 281 338 91 20 chr15 37533449 37533647 -63846874 + L3b LINE CR1 1249 1460 -123 2430 73 0 0 chr15 37533929 37534217 -63846304 - AluSg SINE Alu -22 288 1 919 136 15 0 chr15 37534221 37534353 -63846168 - AluJo SINE Alu -178 134 1 2142 109 0 0 chr15 37535775 37536050 -63844471 - AluSx SINE Alu -3 309 35 1101 155 0 0 chr15 37536206 37536367 -63844154 + FRAM SINE Alu 1 161 -5 2418 58 6 42 chr15 37536676 37536988 -63843533 + AluY SINE Alu 1 301 -10 313 295 67 0 chr15 37536991 37537096 -63843425 - L1ME3A LINE L1 -15 6155 6044 733 304 31 9 chr15 37537159 37537383 -63843138 - MIR SINE MIR -31 231 3 2382 65 0 0 chr15 37538453 37538731 -63841790 + AluY SINE Alu 16 293 -18 829 150 0 0 chr15 37539070 37539190 -63841331 + FLAM_A SINE Alu 1 120 -13 2539 70 0 0 chr15 37539212 37539513 -63841008 + AluSc SINE Alu 1 301 -8 988 185 0 56 chr15 37539522 37539717 -63840804 + AluJo SINE Alu 36 219 -93 188 236 0 55 chr15 37539723 37539778 -63840743 + MIR SINE MIR 159 210 -52 23 68 0 0 chr15 37540405 37540449 -63840072 + AT_rich Low_complexity Low_complexity 1 44 0 726 286 74 48 chr15 37540455 37541061 -63839460 + L1ME4a LINE L1 5500 6121 0 2412 71 0 3 chr15 37541194 37541489 -63839032 + AluY SINE Alu 1 294 -17 243 0 0 0 chr15 37541489 37541516 -63839005 + (TA)n Simple_repeat Simple_repeat 1 27 0 1038 112 0 0 chr15 37541613 37541756 -63838765 - AluSx SINE Alu -15 297 155 458 114 0 148 chr15 37541759 37541847 -63838674 - AluSx SINE Alu -236 76 2 276 158 69 69 chr15 37541914 37542015 -63838506 - L1ME4a LINE L1 -22 6099 5999 2241 108 0 38 chr15 37542061 37542377 -63838144 - AluSg SINE Alu -6 304 1 195 241 0 52 chr15 37542407 37542465 -63838056 - L3 LINE CR1 -881 696 642 38 22 0 0 chr15 37542639 37542684 -63837837 + AT_rich Low_complexity Low_complexity 1 45 0 2178 104 0 0 chr15 37542688 37542967 -63837554 - AluSg SINE Alu -31 279 1 285 323 138 58 chr15 37543009 37543300 -63837221 - L2 LINE L2 -4 3309 2996 306 334 107 22 chr15 37543367 37543684 -63836837 - L2 LINE L2 -407 2907 2564 563 240 240 6 chr15 37544671 37544854 -63835667 + MIR SINE MIR 25 250 -12 304 280 43 0 chr15 37544983 37545076 -63835445 + MER5B DNA MER1_type 2 98 -80 1874 87 4 0 chr15 37546549 37546779 -63833742 + AluSp SINE Alu 65 295 -18 2005 189 23 7 chr15 37547629 37547917 -63832604 + Charlie1 DNA MER1_type 5 287 -2474 2241 95 48 0 chr15 37547917 37548212 -63832309 + AluY SINE Alu 1 309 -2 2005 189 23 7 chr15 37548212 37548400 -63832121 + Charlie1 DNA MER1_type 287 2761 0 418 191 48 19 chr15 37548400 37548503 -63832018 - MLT1I LTR MaLR -16 393 288 2078 126 10 7 chr15 37548661 37548962 -63831559 + AluSx SINE Alu 1 302 -10 1126 279 45 46 chr15 37549376 37549594 -63830927 - L2 LINE L2 0 3313 3096 2387 113 7 0 chr15 37549594 37549904 -63830617 + AluSq SINE Alu 1 312 -1 1126 279 45 46 chr15 37549904 37550298 -63830223 - L2 LINE L2 -217 3096 2709 2283 78 0 10 chr15 37550298 37550618 -63829903 - AluY SINE Alu 0 311 1 1126 279 45 46 chr15 37550618 37550744 -63829777 - L2 LINE L2 -604 2709 2584 514 271 53 43 chr15 37550748 37550955 -63829566 + MER63A DNA MER1_type 2 210 0 801 234 39 39 chr15 37551540 37551796 -63828725 - MER112 DNA MER1_type 0 256 1 2637 56 0 0 chr15 37552678 37552981 -63827540 + AluY SINE Alu 1 303 -8 2160 125 0 0 chr15 37553005 37553292 -63827229 - AluSx SINE Alu -25 287 1 2135 137 70 41 chr15 37554914 37555061 -63825460 - L1MB7 LINE L1 -2 6182 6041 1839 127 35 3 chr15 37555061 37555344 -63825177 - AluJb SINE Alu -20 292 1 2135 137 70 41 chr15 37555344 37555495 -63825026 - L1MB7 LINE L1 -143 6041 5896 1578 153 76 4 chr15 37555495 37555744 -63824777 - AluJo SINE Alu -45 267 1 2135 137 70 41 chr15 37555744 37555903 -63824618 - L1MB7 LINE L1 -288 5896 5711 2084 128 0 7 chr15 37556275 37556571 -63823950 + AluSx SINE Alu 1 294 -18 3281 105 133 36 chr15 37556608 37556944 -63823577 - Tigger3(Golem) DNA MER2_type 0 3029 2727 203 61 30 0 chr15 37556944 37556977 -63823544 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 3281 105 133 36 chr15 37556977 37557182 -63823339 - Tigger3(Golem) DNA MER2_type -302 2727 2543 2234 123 0 0 chr15 37557182 37557483 -63823038 - AluSx SINE Alu -11 301 1 3281 105 133 36 chr15 37557483 37557626 -63822895 - Tigger3(Golem) DNA MER2_type -486 2543 2278 627 204 0 0 chr15 37557617 37557725 -63822796 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 415 209 191 0 chr15 37557727 37557842 -63822679 - MIR SINE MIR -25 237 101 2261 125 3 3 chr15 37557842 37558154 -63822367 + AluSx SINE Alu 1 312 0 1669 137 0 41 chr15 37558183 37558453 -63822068 + AluJo SINE Alu 37 295 -17 263 318 45 0 chr15 37558454 37558542 -63821979 - MIR SINE MIR -153 109 18 2414 82 3 0 chr15 37558572 37558863 -63821658 - AluSp SINE Alu -21 292 1 203 186 0 0 chr15 37559147 37559190 -63821331 + L2 LINE L2 2922 2964 -349 339 278 209 27 chr15 37560779 37561038 -63819483 - L2 LINE L2 0 3313 3008 2292 109 3 7 chr15 37562479 37562782 -63817739 + AluSx SINE Alu 1 302 -10 2395 84 3 3 chr15 37562818 37563129 -63817392 - AluY SINE Alu 0 311 1 2251 128 0 0 chr15 37563204 37563500 -63817021 - AluSq SINE Alu -17 296 1 1720 102 0 34 chr15 37563580 37563816 -63816705 + AluJb SINE Alu 73 300 -12 841 159 0 0 chr15 37563836 37563962 -63816559 + FLAM_A SINE Alu 10 135 -7 1762 161 39 42 chr15 37565160 37565470 -63815051 + AluJb SINE Alu 1 309 -3 999 198 11 5 chr15 37566099 37566286 -63814235 - MER5A DNA MER1_type -1 188 1 285 293 61 10 chr15 37566389 37566488 -63814033 - MER5B DNA MER1_type -1 177 74 1601 242 61 40 chr15 37568606 37569151 -63811370 - MER90 LTR ERV1 -16 559 4 491 306 68 0 chr15 37569667 37569814 -63810707 + MIR SINE MIR 85 241 -21 2311 204 52 13 chr15 37570638 37571191 -63809330 + L1MD3 LINE L1 7405 7979 -16 815 245 130 5 chr15 37575288 37575504 -63805017 + MIR SINE MIR 14 256 -6 344 263 12 0 chr15 37579532 37579612 -63800909 - MER94 DNA DNA -6 128 48 202 292 0 0 chr15 37581098 37581146 -63799375 + (CA)n Simple_repeat Simple_repeat 1 48 0 2201 86 7 20 chr15 37581739 37582043 -63798478 + AluSx SINE Alu 1 300 -12 24 0 0 0 chr15 37582154 37582178 -63798343 + GC_rich Low_complexity Low_complexity 1 24 0 212 206 19 88 chr15 37582667 37582827 -63797694 + (CGGGG)n Simple_repeat Simple_repeat 1 149 0 226 244 0 0 chr15 37583343 37583388 -63797133 + CT-rich Low_complexity Low_complexity 4 48 0 232 209 295 0 chr15 37583544 37583649 -63796872 - L1MC4a LINE L1 -1868 5940 5805 373 224 46 121 chr15 37583731 37583905 -63796616 - L2 LINE L2 -4 3309 3149 255 281 24 37 chr15 37583923 37584005 -63796516 - L2 LINE L2 -367 2946 2866 1296 170 91 25 chr15 37584043 37584319 -63796202 - AluJo SINE Alu -18 294 1 830 163 208 6 chr15 37584512 37584690 -63795831 + AluJo SINE Alu 1 214 -98 239 247 4 4 chr15 37584691 37584768 -63795753 + MER52C LTR ERV1 1 60 -1218 3769 175 140 15 chr15 37585148 37586007 -63794514 + MER52A LTR ERV1 56 1021 -734 4228 166 46 5 chr15 37586339 37587106 -63793415 + MER52A LTR ERV1 957 1754 -1 504 153 0 0 chr15 37587106 37587178 -63793343 + AluJo SINE Alu 211 282 -30 263 381 41 22 chr15 37587687 37587957 -63792564 - L2 LINE L2 -453 2861 2587 851 272 46 52 chr15 37587959 37588115 -63792406 - L2 LINE L2 0 3313 3158 213 39 0 0 chr15 37588115 37588141 -63792380 + (TA)n Simple_repeat Simple_repeat 2 27 0 1905 161 3 0 chr15 37588141 37588445 -63792076 - AluJo SINE Alu -7 305 1 851 272 46 52 chr15 37588445 37588636 -63791885 - L2 LINE L2 -153 3160 2967 188 310 70 31 chr15 37588603 37588732 -63791789 - L2 LINE L2 -720 2594 2461 * 239 198 0 86 chr15 37588950 37589031 -63791490 + L2 LINE L2 3190 3263 -9 351 324 81 0 chr15 37592100 37592305 -63788216 + MIR SINE MIR 39 258 -4 2192 84 10 7 chr15 37592318 37592614 -63787907 - AluY SINE Alu -14 297 1 633 229 159 10 chr15 37594505 37594706 -63785815 + MIR SINE MIR 24 254 -8 183 326 0 0 chr15 37597519 37597568 -63782953 + L2 LINE L2 3210 3258 -14 1885 97 31 0 chr15 37597807 37598066 -63782455 - AluSx SINE Alu -13 299 33 236 203 0 31 chr15 37599795 37599859 -63780662 + (CTGGGG)n Simple_repeat Simple_repeat 3 64 0 345 289 114 18 chr15 37605321 37605435 -63775086 + MIR3 SINE MIR 6 130 -78 671 79 0 0 chr15 37606666 37606755 -63773766 - 5S rRNA rRNA -32 89 1 343 289 74 7 chr15 37610537 37610672 -63769849 - MER5B DNA MER1_type -4 174 31 233 188 42 0 chr15 37610861 37610909 -63769612 - MER5B DNA MER1_type -128 50 1 339 246 189 0 chr15 37612541 37612663 -63767858 + MIR SINE MIR 77 221 -41 1887 151 0 3 chr15 37612741 37613026 -63767495 + AluSx SINE Alu 2 285 -27 668 167 106 66 chr15 37613858 37613887 -63766634 + MLT1B LTR MaLR 1 27 -363 2157 121 0 0 chr15 37613887 37614184 -63766337 - AluSx SINE Alu -15 297 1 668 167 106 66 chr15 37614184 37614352 -63766169 + MLT1B LTR MaLR 27 206 -184 1889 124 14 3 chr15 37619056 37619339 -63761182 - AluSx SINE Alu -26 286 1 187 271 188 57 chr15 37619619 37619749 -63760772 - MIR SINE MIR -56 152 12 614 245 44 84 chr15 37620050 37620323 -63760198 - L1MD2 LINE L1 -15 6344 6083 270 261 54 45 chr15 37623927 37624038 -63756483 - MIR3 SINE MIR -87 121 10 191 234 18 36 chr15 37627225 37627336 -63753185 + (CCCA)n Simple_repeat Simple_repeat 4 112 0 236 273 30 0 chr15 37632364 37632430 -63748091 - MER91A DNA MER1_type 0 196 129 462 315 48 6 chr15 37632445 37632610 -63747911 - MER91A DNA MER1_type -24 172 1 2339 58 7 0 chr15 37633512 37633807 -63746714 + AluYa5 SINE Alu 2 298 -13 387 301 172 23 chr15 37635357 37635752 -63744769 + L2 LINE L2 2818 3271 -1 219 164 18 55 chr15 37636934 37636989 -63743532 + C-rich Low_complexity Low_complexity 4 56 0 1806 238 103 24 chr15 37638466 37638517 -63742004 + L2 LINE L2 2398 2444 -869 2115 88 6 60 chr15 37638517 37638699 -63741822 - AluSx SINE Alu -12 300 141 2341 87 0 3 chr15 37638699 37639011 -63741510 - AluY SINE Alu 0 311 1 2115 88 6 60 chr15 37639011 37639145 -63741376 - AluSx SINE Alu -171 141 1 1806 238 103 24 chr15 37639145 37639748 -63740773 + L2 LINE L2 2444 3139 -174 2145 96 3 3 chr15 37639748 37640049 -63740472 - AluSx SINE Alu -11 301 1 1806 238 103 24 chr15 37640049 37640239 -63740282 + L2 LINE L2 3139 3313 0 532 305 74 15 chr15 37641715 37641934 -63738587 - MIR SINE MIR -30 232 3 1732 141 4 4 chr15 37643230 37643486 -63737035 - AluSx SINE Alu -56 256 1 852 191 7 7 chr15 37644145 37644297 -63736224 - AluJb SINE Alu -14 298 147 254 336 118 0 chr15 37645416 37645526 -63734995 + MER5B DNA MER1_type 49 171 -7 390 339 130 4 chr15 37645587 37645826 -63734695 + L2 LINE L2 2804 3072 -241 194 284 185 0 chr15 37645890 37645971 -63734550 + L2 LINE L2 3217 3312 -1 687 269 88 5 chr15 37646179 37646372 -63734149 - MER63A DNA MER1_type -1 209 1 241 300 60 10 chr15 37646510 37646610 -63733911 + MIR SINE MIR 66 170 -92 263 278 106 80 chr15 37647203 37647354 -63733167 + MIR3 SINE MIR 47 201 -7 244 358 88 10 chr15 37650071 37650264 -63730257 + L2 LINE L2 2853 3060 -212 29 0 0 0 chr15 37650668 37650697 -63729824 + AT_rich Low_complexity Low_complexity 1 29 0 775 178 8 0 chr15 37650697 37650826 -63729695 - FLAM_C SINE Alu -2 131 2 1918 98 18 4 chr15 37653314 37653588 -63726933 + AluSc SINE Alu 32 309 0 650 271 22 22 chr15 37655178 37655359 -63725162 - MIR3 SINE MIR -3 205 25 684 157 0 0 chr15 37656967 37657114 -63723407 + (TCCA)n Simple_repeat Simple_repeat 2 148 0 329 353 21 37 chr15 37657114 37657355 -63723166 - L2 LINE L2 0 3313 3077 698 125 0 0 chr15 37657356 37657452 -63723069 + AluJ/FLAM SINE Alu 1 96 -216 394 203 18 26 chr15 37657460 37657573 -63722948 + L1MC4 LINE L1 1996 6983 -1339 365 359 0 0 chr15 37657492 37657584 -63722937 - L1MC4 LINE L1 -1339 6703 6612 * 381 302 58 36 chr15 37658036 37658175 -63722346 - L1ME4a LINE L1 -11 6110 5969 282 56 0 0 chr15 37658176 37658212 -63722309 + (CA)n Simple_repeat Simple_repeat 2 37 0 392 299 49 42 chr15 37658236 37658380 -63722141 - L1ME4a LINE L1 -248 5873 5729 294 325 89 47 chr15 37660155 37660346 -63720175 - L2 LINE L2 0 3313 3115 1594 181 13 7 chr15 37660389 37660692 -63719829 - AluJo SINE Alu -7 305 1 4396 172 97 0 chr15 37660740 37661582 -63718939 + LTR28 LTR ERV1 1 924 -96 1820 155 0 10 chr15 37662251 37662541 -63717980 - AluJb SINE Alu -23 289 3 423 0 0 0 chr15 37662545 37662592 -63717929 + (TG)n Simple_repeat Simple_repeat 2 48 0 1985 125 24 0 chr15 37662597 37662886 -63717635 - AluSx SINE Alu -16 296 1 367 260 126 0 chr15 37663237 37663364 -63717157 + Charlie8 DNA MER1_type 12 154 -2263 251 233 0 0 chr15 37663500 37663560 -63716961 + Charlie8 DNA MER1_type 351 410 -2007 2271 84 3 0 chr15 37665305 37665591 -63714930 - AluSx SINE Alu -25 287 1 2185 124 0 0 chr15 37667135 37667434 -63713087 + AluSx SINE Alu 1 299 -13 322 224 26 40 chr15 37667538 37667614 -63712907 - MIR SINE MIR -104 104 30 371 395 35 5 chr15 37668136 37668329 -63712192 + MIR SINE MIR 15 211 -51 198 0 0 0 chr15 37668763 37668785 -63711736 + (TG)n Simple_repeat Simple_repeat 1 22 0 1311 114 0 0 chr15 37669512 37669696 -63710825 - AluSx SINE Alu -12 298 115 243 0 0 0 chr15 37669812 37669839 -63710682 + (CA)n Simple_repeat Simple_repeat 2 28 0 974 98 0 0 chr15 37669981 37670104 -63710417 - AluSx SINE Alu -190 123 1 469 343 22 6 chr15 37671033 37671211 -63709310 + MIR SINE MIR 28 208 -54 2202 89 0 0 chr15 37671823 37672141 -63708380 - AluSg SINE Alu 0 318 1 309 51 0 0 chr15 37672940 37672979 -63707542 + (CA)n Simple_repeat Simple_repeat 2 40 0 330 320 165 24 chr15 37673614 37673820 -63706701 - MIR SINE MIR -12 250 16 357 316 26 8 chr15 37675290 37675407 -63705114 - L1MC4 LINE L1 0 8042 7924 421 348 50 43 chr15 37675418 37675679 -63704842 + L1MD1 LINE L1 5768 5967 -217 282 294 64 9 chr15 37676718 37676827 -63703694 + LTR67 LTR ERVL 428 542 -15 1647 157 18 7 chr15 37676837 37677146 -63703375 + AluJo SINE Alu 1 312 0 642 306 104 17 chr15 37677391 37677738 -63702783 + HsTC2 DNA Tc2 215 591 -1307 1394 148 165 3 chr15 37677770 37678067 -63702454 - L1MB3 LINE L1 -36 6147 5803 532 335 17 6 chr15 37678205 37678381 -63702140 + MER5B DNA MER1_type 1 178 0 794 199 58 103 chr15 37679015 37679276 -63701245 + MIR SINE MIR 11 259 -3 191 231 0 0 chr15 37679293 37679332 -63701189 + L2 LINE L2 3262 3300 -13 484 267 37 51 chr15 37679338 37679520 -63701001 + L1ME1 LINE L1 5949 6129 -37 2003 123 3 14 chr15 37679520 37679804 -63700717 + AluSx SINE Alu 17 297 -15 484 267 37 51 chr15 37679804 37679838 -63700683 + L1ME1 LINE L1 6129 6162 -4 864 139 29 22 chr15 37680804 37680941 -63699580 + FLAM_C SINE Alu 1 138 -5 381 271 71 43 chr15 37681416 37681653 -63698868 + L2 LINE L2 2797 3050 -222 283 268 222 20 chr15 37681819 37681972 -63698549 + L2 LINE L2 3118 3301 -12 2848 155 16 78 chr15 37681974 37682593 -63697928 + L1MB1 LINE L1 5587 6167 -1 956 273 16 4 chr15 37682960 37683209 -63697312 - MIR SINE MIR -10 252 1 299 189 57 47 chr15 37683219 37683325 -63697196 + L1ME4a LINE L1 6015 6121 0 187 279 177 13 chr15 37684419 37684498 -63696023 + MIR3 SINE MIR 103 194 -14 301 148 36 9 chr15 37685639 37685725 -63694796 + L1M3 LINE L1 5352 5443 -712 262 331 23 31 chr15 37685724 37685854 -63694667 + L1MC4a LINE L1 5536 5664 -2144 * 413 97 0 136 chr15 37685884 37685960 -63694561 - L1MA8 LINE L1 -2 6289 6228 2046 126 0 14 chr15 37685960 37686305 -63694216 + AluJb SINE Alu 1 341 0 413 97 0 136 chr15 37686305 37686330 -63694191 - L1MA8 LINE L1 -63 6228 6201 2566 67 0 0 chr15 37686513 37686811 -63693710 - AluSg SINE Alu -12 298 1 389 254 146 32 chr15 37686922 37687107 -63693414 + L1MC4a LINE L1 5695 5900 -1908 198 279 128 0 chr15 37687829 37687915 -63692606 - MIR SINE MIR -57 205 109 407 227 58 71 chr15 37688211 37688365 -63692156 - MIR SINE MIR -51 211 60 1650 175 16 30 chr15 37689146 37689449 -63691072 - AluJo SINE Alu -13 299 1 573 257 166 17 chr15 37689771 37690224 -63690297 + L2 LINE L2 2738 3253 -19 360 115 33 0 chr15 37690494 37690555 -63689966 + MIR SINE MIR 14 76 -186 641 270 70 64 chr15 37690555 37691049 -63689472 - MLT1H1 LTR MaLR -8 541 64 679 192 53 20 chr15 37691122 37691273 -63689248 + MIR SINE MIR 67 222 -40 1996 134 58 12 chr15 37692699 37693042 -63687479 - MER46B DNA MER2_type -2 234 1 22 0 0 0 chr15 37694113 37694135 -63686386 + AT_rich Low_complexity Low_complexity 1 22 0 784 96 0 19 chr15 37694250 37694354 -63686167 + AluSq/x SINE Alu 2 103 -210 1408 109 35 5 chr15 37694448 37694649 -63685872 + AluSc SINE Alu 93 299 -10 866 118 0 52 chr15 37694818 37694954 -63685567 - FLAM_C SINE Alu -4 129 1 381 296 65 9 chr15 37696010 37696226 -63684295 + L1MC4a LINE L1 5703 5930 -1878 2152 105 16 7 chr15 37697078 37697382 -63683139 - AluSq SINE Alu -5 308 2 314 270 45 18 chr15 37697525 37697636 -63682885 + L2 LINE L2 2966 3079 -193 352 209 363 16 chr15 37698309 37698491 -63682030 - MIR SINE MIR -5 257 13 396 259 43 36 chr15 37698913 37699052 -63681469 + MIR3 SINE MIR 4 143 -65 209 342 76 0 chr15 37699513 37699592 -63680929 - MIR SINE MIR -109 153 69 641 257 62 40 chr15 37700683 37700909 -63679612 + MIR SINE MIR 7 237 -25 1841 141 18 0 chr15 37701300 37701584 -63678937 + AluJo SINE Alu 1 289 -23 617 270 89 21 chr15 37701776 37702013 -63678508 - MIR SINE MIR -3 259 7 213 297 81 36 chr15 37702157 37702268 -63678253 + MIR3 SINE MIR 4 119 -89 263 227 67 0 chr15 37702595 37702670 -63677851 - MER116 DNA Mariner 0 80 1 2231 97 7 0 chr15 37702826 37703115 -63677406 + AluSg SINE Alu 1 291 -19 890 133 0 15 chr15 37703174 37703309 -63677212 - FLAM_C SINE Alu 0 133 1 1764 152 15 0 chr15 37703598 37703868 -63676653 + AluJo SINE Alu 1 274 -38 332 206 44 0 chr15 37703880 37703948 -63676573 - L1MCa LINE L1 -4362 2064 1994 2350 107 0 0 chr15 37703949 37704257 -63676264 + AluSx SINE Alu 1 308 -4 261 301 45 53 chr15 37705602 37705735 -63674786 + MIR3 SINE MIR 12 143 -65 306 0 0 0 chr15 37705864 37705898 -63674623 + (CCCTAA)n Simple_repeat Simple_repeat 3 36 0 597 294 76 9 chr15 37705952 37706163 -63674358 + MIR SINE MIR 38 262 0 180 171 49 24 chr15 37707112 37707153 -63673368 - L3b LINE CR1 -106 1477 1436 2337 96 0 29 chr15 37707569 37707881 -63672640 + AluSx SINE Alu 1 303 -9 668 263 50 0 chr15 37708046 37708225 -63672296 - L3 LINE CR1 -26 1551 1364 742 201 15 8 chr15 37708242 37708376 -63672145 - AluJo SINE Alu -176 136 2 301 364 15 8 chr15 37708380 37708512 -63672009 - L3 LINE CR1 -224 1353 1221 309 360 42 33 chr15 37709176 37709390 -63671131 - L3b LINE CR1 -72 1511 1296 2000 125 28 14 chr15 37709610 37709899 -63670622 - AluJb SINE Alu -19 293 1 525 283 40 77 chr15 37710104 37710223 -63670298 - MIR SINE MIR -2 260 153 2883 10 0 3 chr15 37710223 37710535 -63669986 - AluYa5 SINE Alu 0 311 1 525 283 40 77 chr15 37710535 37710662 -63669859 - MIR SINE MIR -109 153 23 394 291 25 0 chr15 37712210 37712344 -63668177 + L1ME LINE L1 5474 5607 -514 2108 138 3 3 chr15 37712352 37712656 -63667865 + AluJb SINE Alu 2 305 -7 217 265 66 99 chr15 37712797 37712948 -63667573 - MIR3 SINE MIR -40 168 23 563 191 119 0 chr15 37714054 37714194 -63666327 - MIR SINE MIR -18 244 89 2762 35 0 13 chr15 37714413 37714726 -63665795 + AluY SINE Alu 1 309 -2 2189 102 27 7 chr15 37714988 37715282 -63665239 + AluSx SINE Alu 1 300 -12 304 282 92 30 chr15 37715473 37715604 -63664917 - MIR SINE MIR -40 222 84 753 212 151 14 chr15 37715617 37715909 -63664612 - L1ME4a LINE L1 -111 6010 5679 2428 84 3 0 chr15 37715973 37716270 -63664251 - AluSx SINE Alu -9 303 6 230 273 15 0 chr15 37716771 37716837 -63663684 + MER103 DNA DNA 99 165 -1 258 308 55 16 chr15 37717186 37717368 -63663153 + L1ME4a LINE L1 4228 4416 -1730 915 317 80 59 chr15 37717476 37717946 -63662575 + L1ME4a LINE L1 4567 5025 -1121 5511 61 9 7 chr15 37717946 37718618 -63661903 + SVA Other Other 714 1386 0 2144 125 3 7 chr15 37718621 37718924 -63661597 + AluSx SINE Alu 1 302 -10 915 317 80 59 chr15 37718924 37719168 -63661353 + L1ME4a LINE L1 5026 5306 -840 2566 75 0 0 chr15 37719168 37719473 -63661048 + AluY SINE Alu 1 305 -6 915 317 80 59 chr15 37719473 37719538 -63660983 + L1ME4a LINE L1 5306 5368 -778 1931 120 0 35 chr15 37719629 37719912 -63660609 + AluJo SINE Alu 13 285 -27 546 226 128 116 chr15 37719976 37720087 -63660434 + L1ME4a LINE L1 5524 5632 -489 1951 150 3 3 chr15 37720087 37720373 -63660148 - AluJb SINE Alu -26 286 1 546 226 128 116 chr15 37720373 37720659 -63659862 + L1ME4a LINE L1 5632 5926 -195 312 209 30 0 chr15 37720659 37720726 -63659795 - L3 LINE CR1 -891 686 618 480 243 18 101 chr15 37720810 37721003 -63659518 - MER5A DNA MER1_type 0 189 3 216 214 43 29 chr15 37721221 37721291 -63659230 + (CCCA)n Simple_repeat Simple_repeat 1 71 0 341 268 110 0 chr15 37721494 37721658 -63658863 + L2 LINE L2 1814 1995 -1319 473 232 141 15 chr15 37721701 37722121 -63658400 + MLT1K LTR MaLR 40 580 -8 453 258 131 12 chr15 37722254 37722498 -63658023 + L2 LINE L2 2217 2489 -825 245 296 37 93 chr15 37722483 37722645 -63657876 + L2 LINE L2 2966 3118 -154 * 218 394 61 15 chr15 37722990 37723188 -63657333 - L3 LINE CR1 -1295 282 76 972 135 0 0 chr15 37723758 37723891 -63656630 - FLAM_C SINE Alu 0 133 1 881 178 43 0 chr15 37724085 37724248 -63656273 - L1MB7 LINE L1 -16 6168 5999 306 117 67 17 chr15 37724249 37724309 -63656212 - L1M4 LINE L1 -1202 4944 4882 * 505 154 89 0 chr15 37724308 37724431 -63656090 - L1M4 LINE L1 -1876 4270 4137 2419 62 10 0 chr15 37724570 37724859 -63655662 + AluSp SINE Alu 5 296 -17 22 35 0 0 chr15 37727862 37727891 -63652630 + GC_rich Low_complexity Low_complexity 1 29 0 2372 89 0 0 chr15 37728613 37728929 -63651592 - AluSx SINE Alu 0 312 1 451 218 112 71 chr15 37729045 37729215 -63651306 + MER5A DNA MER1_type 7 183 -6 509 235 0 0 chr15 37729260 37729358 -63651163 - MER5A DNA MER1_type -83 106 9 348 321 113 6 chr15 37729360 37729519 -63651002 + MIR SINE MIR 19 194 -68 321 342 52 52 chr15 37729591 37729784 -63650737 + L1M4 LINE L1 4990 5182 -964 3271 125 10 0 chr15 37729800 37730320 -63650201 + L1MC1 LINE L1 5600 6124 -209 787 166 18 31 chr15 37730343 37730506 -63650015 - L1MC1 LINE L1 -19 6314 6154 1893 189 13 26 chr15 37730523 37731179 -63649342 + L1ME4a LINE L1 4971 5625 -541 500 236 1 0 chr15 37731179 37731313 -63649208 + L1MA10 LINE L1 5985 6278 -47 1207 138 38 5 chr15 37731314 37731524 -63648997 - MER2 DNA MER2_type -5 340 124 438 90 82 179 chr15 37731555 37731689 -63648832 - MER2 DNA MER2_type -210 135 15 415 253 131 68 chr15 37731869 37732013 -63648508 + L1ME4a LINE L1 5746 5880 -241 3572 134 43 21 chr15 37732013 37732080 -63648441 + L1MB2 LINE L1 5545 5609 -562 1764 131 13 29 chr15 37732080 37732386 -63648135 + AluSx SINE Alu 1 301 -11 3572 134 43 21 chr15 37732386 37732555 -63647966 + L1MB2 LINE L1 5609 5773 -398 186 43 0 0 chr15 37732555 37732578 -63647943 + (CA)n Simple_repeat Simple_repeat 2 24 0 3572 134 43 21 chr15 37732578 37732944 -63647577 + L1MB2 LINE L1 5773 6161 -10 415 253 131 68 chr15 37732944 37733151 -63647370 + L1ME4a LINE L1 5880 6119 -2 270 101 0 0 chr15 37733298 37733345 -63647176 - L1MA2 LINE L1 0 6305 6259 256 159 0 0 chr15 37733357 37733401 -63647120 - L1MA2 LINE L1 -2 6302 6259 253 156 0 0 chr15 37733424 37733469 -63647052 - L1MA1 LINE L1 -1 6301 6257 228 146 0 42 chr15 37733481 37733529 -63646992 - L1MA1 LINE L1 0 6302 6257 262 132 0 0 chr15 37733549 37733596 -63646925 - L1MA2 LINE L1 0 6305 6259 199 364 67 42 chr15 37733604 37733769 -63646752 - L3b LINE CR1 -253 1330 1162 1183 249 112 16 chr15 37734153 37734538 -63645983 + MLT1J LTR MaLR 44 465 -46 1840 214 101 56 chr15 37734679 37735234 -63645287 + MLT1G LTR MaLR 11 590 0 365 264 28 28 chr15 37735255 37735361 -63645160 - MLT1J LTR MaLR -64 447 342 * 477 220 56 3 chr15 37735351 37735524 -63644997 + MLT1J LTR MaLR 238 475 -36 244 361 39 29 chr15 37735548 37735753 -63644768 - L2 LINE L2 -1015 2299 2093 267 308 58 25 chr15 37735927 37736047 -63644474 + L2 LINE L2 3190 3313 0 354 284 29 62 chr15 37736064 37736272 -63644249 - L2 LINE L2 -1292 2022 1822 324 341 63 8 chr15 37737249 37737375 -63643146 - MER5A DNA MER1_type -7 182 50 1894 88 88 4 chr15 37738315 37738588 -63641933 + AluSx SINE Alu 1 296 -16 214 304 0 0 chr15 37739375 37739444 -63641077 + (CA)n Simple_repeat Simple_repeat 1 69 0 246 298 53 18 chr15 37739444 37739558 -63640963 + L2 LINE L2 3155 3272 0 508 280 47 57 chr15 37740357 37740550 -63639971 + MIR SINE MIR 20 210 -52 1904 121 17 27 chr15 37741832 37742130 -63638391 - AluJb SINE Alu -16 296 2 216 258 97 0 chr15 37742180 37742242 -63638279 + MIR SINE MIR 118 185 -77 338 163 0 113 chr15 37743776 37743856 -63636665 + MIR SINE MIR 191 261 -1 402 294 43 37 chr15 37743897 37744060 -63636461 - MIR SINE MIR -91 171 8 221 111 44 0 chr15 37746007 37746052 -63634469 + C-rich Low_complexity Low_complexity 1 47 0 260 321 12 0 chr15 37746880 37746964 -63633557 + L2 LINE L2 3227 3311 -2 1052 282 115 0 chr15 37747426 37747774 -63632747 + LTR16B LTR ERVL 3 390 -74 188 396 18 0 chr15 37747862 37747973 -63632548 - L3b LINE CR1 -139 1444 1332 926 241 21 33 chr15 37748503 37748744 -63631777 + MIR SINE MIR 4 241 -21 183 325 25 74 chr15 37748646 37748809 -63631712 - MIR SINE MIR -105 157 3 * 431 305 187 0 chr15 37749378 37749565 -63630956 + MIR SINE MIR 7 228 -34 813 176 0 0 chr15 37749845 37749976 -63630545 - FLAM_C SINE Alu -2 131 1 25 0 0 0 chr15 37749978 37750003 -63630518 + AT_rich Low_complexity Low_complexity 1 25 0 790 153 55 27 chr15 37750017 37750200 -63630321 + ORSL DNA AcHobo 66 253 -22 310 333 9 0 chr15 37750435 37750546 -63629975 - MIR SINE MIR -81 181 70 247 324 48 9 chr15 37751056 37751161 -63629360 - MIR3 SINE MIR -9 199 91 2143 128 0 3 chr15 37751377 37751690 -63628831 + AluJb SINE Alu 1 312 0 363 313 130 21 chr15 37752650 37752842 -63627679 + MIR SINE MIR 47 259 -3 185 229 0 0 chr15 37753024 37753059 -63627462 - L2 LINE L2 -86 3227 3193 438 349 11 21 chr15 37753657 37753846 -63626675 - MIR SINE MIR 0 262 76 2122 192 38 35 chr15 37753865 37754084 -63626437 + L1M4 LINE L1 4844 5061 -1123 2009 97 14 0 chr15 37754084 37754401 -63626120 + AluSx SINE Alu 1 321 0 2122 192 38 35 chr15 37754401 37754852 -63625669 + L1M4 LINE L1 5061 5514 -670 289 309 147 0 chr15 37755699 37755835 -63624686 - MER5A DNA MER1_type -26 163 8 1984 139 0 3 chr15 37757016 37757310 -63623211 - AluJb SINE Alu -19 293 1 1514 112 177 4 chr15 37757345 37757605 -63622916 + AluJb SINE Alu 1 305 -7 1363 106 5 5 chr15 37758579 37758777 -63621744 - AluSg/x SINE Alu -15 297 100 337 94 12 47 chr15 37759179 37759264 -63621257 + (TTCC)n Simple_repeat Simple_repeat 1 82 0 1948 125 54 0 chr15 37759342 37759638 -63620883 + AluSx SINE Alu 1 312 0 365 196 0 21 chr15 37759650 37759747 -63620774 + GA-rich Low_complexity Low_complexity 4 98 0 187 283 17 17 chr15 37760059 37760119 -63620402 + MER5A DNA MER1_type 116 175 -14 344 281 116 0 chr15 37760733 37760854 -63619667 + L2 LINE L2 3179 3313 0 500 301 72 5 chr15 37760985 37761178 -63619343 - MIR SINE MIR -6 256 51 477 278 232 6 chr15 37764578 37764927 -63615594 + L2 LINE L2 2431 2858 -456 268 269 0 0 chr15 37764972 37765039 -63615482 + (CA)n Simple_repeat Simple_repeat 1 67 0 326 271 79 83 chr15 37765081 37765310 -63615211 + L2 LINE L2 2932 3159 -113 1923 144 3 25 chr15 37766758 37767077 -63613444 + AluJb SINE Alu 1 312 0 314 296 12 0 chr15 37768835 37768916 -63611605 + (CA)n Simple_repeat Simple_repeat 2 83 0 379 330 43 61 chr15 37769100 37769204 -63611317 + L2 LINE L2 2999 3103 -169 2099 105 13 3 chr15 37769204 37769510 -63611011 - AluSq SINE Alu -4 309 1 379 330 43 61 chr15 37769510 37769684 -63610837 + L2 LINE L2 3103 3272 0 322 211 13 26 chr15 37770882 37770958 -63609563 - L2 LINE L2 -19 3253 3179 305 111 0 0 chr15 37771562 37771616 -63608905 - Alu SINE Alu 0 302 249 1879 138 3 10 chr15 37771658 37771956 -63608565 - AluSx SINE Alu -16 296 1 226 325 119 19 chr15 37772578 37772738 -63607783 - L3b LINE CR1 -135 1448 1273 * 428 337 87 6 chr15 37772714 37772886 -63607635 - MIR SINE MIR 0 262 77 388 342 95 5 chr15 37774276 37774466 -63606055 - MIR SINE MIR -35 227 21 3763 126 6 2 chr15 37777625 37778150 -63602371 - MER1A DNA MER1_type 0 527 1 233 305 0 110 chr15 37778238 37778392 -63602129 - L2 LINE L2 -219 3053 2917 193 360 13 0 chr15 37779304 37779379 -63601142 - L2 LINE L2 -15 3257 3182 2354 78 13 0 chr15 37780244 37780551 -63599970 + AluY SINE Alu 1 311 0 4131 83 12 5 chr15 37780558 37781124 -63599397 - LTR19B LTR ERV1 -10 570 1 401 368 15 5 chr15 37781192 37781225 -63599296 + L1M4 LINE L1 4981 5012 -1134 23 33 0 0 chr15 37781225 37781255 -63599266 + AT_rich Low_complexity Low_complexity 1 30 0 401 368 15 5 chr15 37781255 37781396 -63599125 + L1M4 LINE L1 5012 5186 -960 509 357 107 10 chr15 37781443 37781734 -63598787 + L1ME LINE L1 4664 4982 -1164 286 282 46 30 chr15 37781786 37781917 -63598604 + L1ME LINE L1 5412 5544 -577 2291 133 0 0 chr15 37782016 37782324 -63598197 + AluSx SINE Alu 1 308 -4 498 297 184 30 chr15 37782790 37783372 -63597149 + L2 LINE L2 2569 3258 -55 553 233 275 0 chr15 37783449 37783638 -63596883 - MIR SINE MIR -12 250 10 2269 104 0 0 chr15 37783694 37784045 -63596476 - AluSx SINE Alu 0 351 1 1831 161 7 14 chr15 37784424 37784734 -63595787 - AluJb SINE Alu 0 308 1 645 279 132 0 chr15 37784950 37785154 -63595367 + MIR SINE MIR 3 233 -29 1498 225 15 45 chr15 37786036 37786300 -63594221 - L1ME1 LINE L1 -162 6004 5755 1833 149 27 30 chr15 37786300 37786601 -63593920 - AluJb SINE Alu -6 306 7 1498 225 15 45 chr15 37786601 37786736 -63593785 - L1ME1 LINE L1 -411 5755 5617 208 333 17 17 chr15 37786805 37786925 -63593596 + CT-rich Low_complexity Low_complexity 5 124 0 2277 151 76 2 chr15 37787201 37787598 -63592923 + MSTB LTR MaLR 1 426 0 226 199 32 19 chr15 37788294 37788450 -63592071 + (TG)n Simple_repeat Simple_repeat 1 158 0 536 259 9 0 chr15 37789449 37789557 -63590964 + MER81 DNA DNA 2 110 -4 237 214 86 14 chr15 37789885 37789955 -63590566 + MLT1K LTR MaLR 141 215 -373 631 245 84 51 chr15 37790036 37790273 -63590248 + MLT1K LTR MaLR 319 563 -25 257 286 0 58 chr15 37791275 37791429 -63589092 - L1ME3A LINE L1 -231 5939 5795 320 138 31 0 chr15 37791471 37791536 -63588985 + MER52A LTR ERV1 1 67 -1688 5495 177 158 10 chr15 37792161 37793408 -63587113 + MER52A LTR ERV1 366 1755 0 307 203 0 14 chr15 37793424 37793498 -63587023 + HsTC2 DNA Tc2 1 73 -1825 2741 94 29 0 chr15 37793555 37794000 -63586521 - MER1A DNA MER1_type 0 529 32 809 267 84 11 chr15 37794075 37794441 -63586080 - L1ME3A LINE L1 -457 5713 5320 452 321 91 62 chr15 37794511 37794885 -63585636 + L1ME4a LINE L1 5580 5964 -157 321 303 91 20 chr15 37794830 37794929 -63585592 - L1MC4 LINE L1 -1324 6718 6613 * 673 297 86 49 chr15 37794952 37795389 -63585132 + L1ME4a LINE L1 4297 4758 -1388 779 134 8 47 chr15 37795393 37795520 -63585001 + FLAM_C SINE Alu 2 123 -20 285 75 0 0 chr15 37795527 37795567 -63584954 + (CA)n Simple_repeat Simple_repeat 2 41 0 714 250 35 12 chr15 37796077 37796249 -63584272 - MER5B DNA MER1_type -2 176 1 604 285 47 19 chr15 37796282 37796538 -63583983 + L1ME4a LINE L1 5401 5663 -2145 324 251 113 69 chr15 37797471 37797790 -63582731 + L1ME4a LINE L1 5789 6121 0 204 329 14 14 chr15 37797868 37797941 -63582580 - MIR SINE MIR -6 256 184 333 297 242 34 chr15 37798235 37798504 -63582017 + L3 LINE CR1 1250 1574 -3 180 0 0 0 chr15 37798902 37798922 -63581599 + (A)n Simple_repeat Simple_repeat 1 20 0 635 224 42 104 chr15 37799009 37799268 -63581253 + MIR SINE MIR 20 262 0 725 291 170 21 chr15 37799377 37799867 -63580654 - L2 LINE L2 -1 3271 2660 2164 56 0 4 chr15 37799867 37800134 -63580387 + L1PA5 LINE L1 5889 6154 0 725 291 170 21 chr15 37800134 37800339 -63580182 - L2 LINE L2 -612 2660 2487 2138 283 122 19 chr15 37800928 37802092 -63578429 + L2 LINE L2 2010 3312 -1 506 91 13 0 chr15 37802397 37802474 -63578047 - MSTC LTR MaLR 0 428 351 608 205 54 0 chr15 37802493 37802605 -63577916 - AluSq/x SINE Alu -194 119 2 1681 180 53 3 chr15 37802606 37802929 -63577592 - MSTD LTR MaLR -56 340 2 336 226 57 47 chr15 37803199 37803305 -63577216 + L1ME4a LINE L1 5770 5876 -245 2150 172 9 0 chr15 37803353 37803696 -63576825 + MER7A DNA MER2_type 3 346 0 25 0 0 0 chr15 37803781 37803806 -63576715 + AT_rich Low_complexity Low_complexity 1 25 0 554 258 68 0 chr15 37804049 37804181 -63576340 - MIR SINE MIR -109 153 13 961 181 28 0 chr15 37804627 37804809 -63575712 - MSTD LTR MaLR -198 198 12 220 295 0 0 chr15 37805424 37805485 -63575036 - MIR SINE MIR -29 233 173 419 162 54 0 chr15 37805524 37805598 -63574923 + MIR SINE MIR 76 153 -109 21 36 0 0 chr15 37806733 37806761 -63573760 + AT_rich Low_complexity Low_complexity 1 28 0 1981 151 0 0 chr15 37806962 37807246 -63573275 + AluJo SINE Alu 1 284 -28 210 37 0 0 chr15 37808116 37808143 -63572378 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 221 282 28 14 chr15 37809667 37809738 -63570783 + GA-rich Low_complexity Low_complexity 3 74 0 1839 128 95 0 chr15 37809768 37810042 -63570479 - AluSx SINE Alu -12 300 1 415 275 33 0 chr15 37811746 37811837 -63568684 + MIR SINE MIR 94 187 -75 286 273 45 0 chr15 37813028 37813116 -63567405 - MLT1K LTR MaLR 0 588 497 434 309 55 27 chr15 37813624 37813880 -63566641 + L1ME1 LINE L1 5660 5922 -244 * 2130 171 89 9 chr15 37813660 37814088 -63566433 + L1PA16 LINE L1 5703 6164 -2 24 0 0 0 chr15 37814196 37814220 -63566301 + AT_rich Low_complexity Low_complexity 1 24 0 915 211 0 0 chr15 37814220 37814376 -63566145 - FRAM SINE Alu -23 153 1 1211 258 56 15 chr15 37814417 37814809 -63565712 - L1ME3A LINE L1 -17 6153 5746 711 185 50 0 chr15 37814991 37815110 -63565411 + FLAM_C SINE Alu 1 125 -18 379 349 42 6 chr15 37815432 37815598 -63564923 - MIR SINE MIR -3 259 88 348 323 0 0 chr15 37815981 37816077 -63564444 - MER81 DNA DNA 0 114 19 461 309 100 14 chr15 37816288 37816498 -63564023 + MIR SINE MIR 23 250 -12 1636 191 10 19 chr15 37816703 37817012 -63563509 + AluJb SINE Alu 1 306 -6 496 250 103 0 chr15 37817188 37817344 -63563177 - L1ME3A LINE L1 -244 5926 5755 316 292 9 26 chr15 37817927 37818040 -63562481 - MLT1K LTR MaLR -437 151 41 1803 177 17 0 chr15 37818077 37818371 -63562150 + AluJo SINE Alu 4 302 -10 303 281 74 25 chr15 37818394 37818515 -63562006 + MIR3 SINE MIR 78 204 -4 519 221 145 95 chr15 37818865 37819127 -63561394 + MLT1E1 LTR MaLR 304 578 -76 1149 204 40 27 chr15 37819265 37819299 -63561222 - MLT2D LTR ERVL 0 414 382 222 37 0 0 chr15 37819299 37819326 -63561195 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 408 20 0 0 chr15 37819325 37819374 -63561147 + (TG)n Simple_repeat Simple_repeat 1 49 0 1149 204 40 27 chr15 37819326 37819390 -63561131 - MLT2D LTR ERVL -32 382 320 2302 116 10 0 chr15 37819390 37819693 -63560828 - AluSq SINE Alu -7 306 1 1149 204 40 27 chr15 37819693 37819940 -63560581 - MLT2D LTR ERVL -94 320 112 706 222 0 0 chr15 37819944 37820079 -63560442 - AluJo SINE Alu -176 136 2 395 203 29 0 chr15 37820083 37820196 -63560325 - MLT2C1 LTR ERVL -310 87 1 322 264 141 49 chr15 37820224 37820387 -63560134 - L1M4 LINE L1 -2175 3971 3794 1133 236 51 56 chr15 37820971 37821521 -63559000 - MER77 LTR ERV1 -4 601 54 1354 279 47 18 chr15 37821649 37821768 -63558753 - MER90 LTR ERV1 0 614 500 261 0 0 0 chr15 37821768 37821797 -63558724 + (TG)n Simple_repeat Simple_repeat 1 29 0 1354 279 47 18 chr15 37821797 37822183 -63558338 - MER90 LTR ERV1 -114 500 94 238 330 41 0 chr15 37822223 37822320 -63558201 + MIR SINE MIR 118 218 -44 1871 156 12 38 chr15 37822585 37822905 -63557616 + AluJb SINE Alu 1 312 0 2405 231 56 1 chr15 37822915 37823578 -63556943 + L1ME LINE L1 3763 4461 -1685 254 169 15 0 chr15 37823578 37823643 -63556878 + GA-rich Low_complexity Low_complexity 3 68 0 1943 142 30 17 chr15 37828334 37828630 -63551891 - AluJb SINE Alu -12 300 1 232 305 24 0 chr15 37828734 37828816 -63551705 + MER117 DNA MER1_type 4 87 -110 288 298 137 38 chr15 37828990 37829121 -63551400 + MER5A DNA MER1_type 45 188 -1 21 0 0 0 chr15 37830204 37830225 -63550296 + AT_rich Low_complexity Low_complexity 1 21 0 1294 182 0 0 chr15 37830266 37830469 -63550052 - AluJb SINE Alu -23 289 87 339 264 40 95 chr15 37830783 37830931 -63549590 + L1ME LINE L1 4525 4664 -1482 1847 162 0 0 chr15 37830936 37831214 -63549307 + AluSx SINE Alu 1 278 -34 326 123 18 0 chr15 37831215 37831272 -63549249 + G-rich Low_complexity Low_complexity 3 60 0 243 0 0 0 chr15 37831273 37831300 -63549221 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 561 285 76 55 chr15 37831296 37831791 -63548730 + L1ME LINE L1 4655 5158 -988 688 272 80 38 chr15 37831825 37832251 -63548270 + L1ME LINE L1 5259 5702 -468 2827 138 6 4 chr15 37832300 37832799 -63547722 + L1 LINE L1 3374 3873 -2273 2619 107 0 3 chr15 37832829 37833203 -63547318 + MER66A-int LTR ERV1 6304 6676 0 1342 210 35 12 chr15 37833210 37833618 -63546903 + MER66A LTR ERV1 27 478 0 952 192 17 0 chr15 37834356 37834528 -63545993 - MIR SINE MIR -71 191 17 1164 173 93 3 chr15 37835250 37835539 -63544982 - MER33 DNA MER1_type 0 324 10 201 263 79 13 chr15 37835796 37835872 -63544649 + MIR SINE MIR 118 198 -64 409 304 99 22 chr15 37835914 37836095 -63544426 - MIR SINE MIR -32 230 36 2444 94 0 0 chr15 37837256 37837563 -63542958 - AluSq SINE Alu -6 307 1 243 0 0 0 chr15 37837735 37837762 -63542759 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 27 62 0 0 chr15 37837824 37837872 -63542649 + AT_rich Low_complexity Low_complexity 1 48 0 315 284 149 51 chr15 37837952 37838338 -63542183 - L2 LINE L2 -170 3143 2716 404 238 120 49 chr15 37840917 37841089 -63539432 - MIR SINE MIR -39 223 35 2210 117 3 3 chr15 37841901 37842208 -63538313 + AluSq SINE Alu 1 307 -6 232 340 94 25 chr15 37842296 37842455 -63538066 - MIR SINE MIR -30 232 63 940 200 47 0 chr15 37845404 37845594 -63534927 + MIR SINE MIR 18 216 -46 547 235 50 58 chr15 37846449 37846482 -63534039 - MIR SINE MIR -33 229 197 8190 58 9 5 chr15 37846482 37847485 -63533036 + LTR13 LTR ERVK 1 1007 0 547 235 50 58 chr15 37847485 37847673 -63532848 - MIR SINE MIR -65 197 13 22 0 0 0 chr15 37850793 37850815 -63529706 + AT_rich Low_complexity Low_complexity 1 22 0 1697 173 10 30 chr15 37850824 37851119 -63529402 + AluJo SINE Alu 1 289 -23 1349 200 55 10 chr15 37851859 37852169 -63528352 - MER33 DNA MER1_type 0 324 1 608 324 52 34 chr15 37852845 37853169 -63527352 + MLT1K LTR MaLR 61 390 -198 1592 248 205 6 chr15 37853213 37853749 -63526772 + MER69 DNA AcHobo 1 643 -583 1299 271 165 6 chr15 37853904 37854446 -63526075 + MLT1G LTR MaLR 1 590 0 876 166 29 191 chr15 37854446 37854789 -63525732 + MER69 DNA AcHobo 2045 2291 -235 2013 153 0 0 chr15 37854789 37855090 -63525431 - AluSx SINE Alu -5 307 7 876 166 29 191 chr15 37855090 37855222 -63525299 + MER69 DNA AcHobo 2291 2443 -83 373 230 82 22 chr15 37855407 37855542 -63524979 - MIR SINE MIR -89 173 31 264 204 0 0 chr15 37856103 37856152 -63524369 - L2 LINE L2 0 3313 3265 183 42 0 0 chr15 37856707 37856731 -63523790 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr15 37857925 37857949 -63522572 + AT_rich Low_complexity Low_complexity 1 24 0 2401 97 0 10 chr15 37858673 37858983 -63521538 + AluSx SINE Alu 1 307 -5 2440 102 0 0 chr15 37860344 37860648 -63519873 + AluSx SINE Alu 1 304 -8 2199 104 0 0 chr15 37861201 37861490 -63519031 + AluSq SINE Alu 1 289 -24 1796 153 35 11 chr15 37861617 37861904 -63518617 + AluJo SINE Alu 1 294 -18 2286 112 3 3 chr15 37862304 37862607 -63517914 + AluSq SINE Alu 3 305 -8 950 251 26 26 chr15 37863152 37863455 -63517066 + L1ME3 LINE L1 5860 6162 0 1146 221 26 145 chr15 37863689 37864166 -63516355 + HAL1 LINE L1 549 1081 -1426 2737 152 12 0 chr15 37864166 37864595 -63515926 - MER57B LTR ERV1 0 434 1 1146 221 26 145 chr15 37864595 37864816 -63515705 + HAL1 LINE L1 1081 1151 -1356 1999 169 0 6 chr15 37864816 37865129 -63515392 + AluJb SINE Alu 1 311 -1 1146 221 26 145 chr15 37865129 37865193 -63515328 + HAL1 LINE L1 1151 1221 -1286 311 212 12 0 chr15 37865207 37865292 -63515229 + CT-rich Low_complexity Low_complexity 1 86 0 233 197 16 0 chr15 37865292 37865353 -63515168 - FAM SINE Alu 0 179 118 887 252 132 48 chr15 37865366 37865807 -63514714 + HAL1 LINE L1 1233 1710 -797 209 94 31 0 chr15 37865830 37865862 -63514659 + MER5A DNA MER1_type 43 75 -114 * 429 261 76 0 chr15 37865858 37865950 -63514571 - MER5A DNA MER1_type -83 106 8 572 235 130 43 chr15 37865953 37866521 -63514000 + HAL1 LINE L1 1692 2359 -148 2074 122 31 0 chr15 37866521 37866809 -63513712 + AluSg SINE Alu 1 297 -13 572 235 130 43 chr15 37866809 37866936 -63513585 + HAL1 LINE L1 2359 2474 -33 2375 105 0 0 chr15 37866949 37867243 -63513278 + AluSp SINE Alu 1 294 -19 390 226 69 0 chr15 37867593 37867695 -63512826 - MLT1K LTR MaLR 0 588 480 228 215 283 62 chr15 37867706 37867844 -63512677 + MIR SINE MIR 47 153 -109 2083 150 134 8 chr15 37867844 37868224 -63512297 - MSTA LTR MaLR 0 428 1 228 215 283 62 chr15 37868224 37868262 -63512259 + MIR SINE MIR 153 262 0 2444 82 0 7 chr15 37868262 37868568 -63511953 + AluY SINE Alu 2 305 -6 569 290 76 32 chr15 37868580 37868894 -63511627 + L1MC/D LINE L1 1340 1690 -886 451 287 53 40 chr15 37869258 37869418 -63511103 + L1MC/D LINE L1 2053 2174 -4041 2178 132 0 0 chr15 37869418 37869721 -63510800 + AluSx SINE Alu 1 303 -9 451 287 53 40 chr15 37869721 37869797 -63510724 + L1MC/D LINE L1 2174 2248 -3967 682 276 70 75 chr15 37869871 37870540 -63509981 + L1MC/D LINE L1 2279 2944 -3271 3367 148 77 159 chr15 37870556 37871111 -63509410 - L1MC3 LINE L1 -6 7779 7180 341 238 0 48 chr15 37871111 37871216 -63509305 - MLT1F1 LTR MaLR -433 134 35 3367 148 77 159 chr15 37871216 37871439 -63509082 - L1MC3 LINE L1 -605 7180 6940 2321 91 0 20 chr15 37871439 37871737 -63508784 - AluSx SINE Alu -20 292 1 3367 148 77 159 chr15 37871737 37872075 -63508446 - L1MC3 LINE L1 -845 6940 6683 351 0 0 0 chr15 37872075 37872114 -63508407 + (TG)n Simple_repeat Simple_repeat 2 40 0 3367 148 77 159 chr15 37872114 37872279 -63508242 - L1MC3 LINE L1 -1102 6683 6506 2225 128 0 25 chr15 37872312 37872632 -63507889 + AluSx SINE Alu 1 312 0 559 273 134 27 chr15 37872746 37873185 -63507336 + L1MC/D LINE L1 4538 4929 -1421 1960 158 7 0 chr15 37873185 37873476 -63507045 - AluJb SINE Alu -19 293 1 559 273 134 27 chr15 37873476 37873949 -63506572 + L1MC/D LINE L1 4929 5555 -795 1384 180 36 36 chr15 37874487 37874821 -63505700 - MLT2D LTR ERVL -9 405 64 1216 212 90 61 chr15 37874839 37875145 -63505376 - LTR16A1 LTR ERVL 0 457 133 2033 173 73 5 chr15 37875145 37875515 -63505006 + MLT2C1 LTR ERVL 1 395 -2 1216 212 90 61 chr15 37875515 37875652 -63504869 - LTR16A1 LTR ERVL -324 133 1 1136 306 30 50 chr15 37875822 37876397 -63504124 - ERVL LTR ERVL -422 5342 4780 890 294 48 3 chr15 37876610 37876919 -63503602 - ERVL LTR ERVL -1274 4490 4168 315 49 0 0 chr15 37877347 37877388 -63503133 + (CA)n Simple_repeat Simple_repeat 2 42 0 458 287 80 39 chr15 37877633 37877825 -63502696 + MIR SINE MIR 42 248 -14 1561 229 78 14 chr15 37877937 37878373 -63502148 + LTR16B LTR ERVL 1 464 0 4339 182 35 31 chr15 37879271 37880197 -63500324 - L1MC1 LINE L1 -220 6113 5184 2387 102 3 0 chr15 37880197 37880500 -63500021 - AluSx SINE Alu -8 304 1 4339 182 35 31 chr15 37880500 37881417 -63499104 - L1MC1 LINE L1 -1149 5184 4272 435 309 106 35 chr15 37881417 37881673 -63498848 - L1 LINE L1 -1149 4997 4724 900 138 0 0 chr15 37881713 37881836 -63498685 - FLAM_C SINE Alu -9 124 2 1881 141 13 10 chr15 37881974 37882280 -63498241 - AluSq SINE Alu -6 307 1 204 0 0 36 chr15 37882293 37882321 -63498200 + (TTTA)n Simple_repeat Simple_repeat 2 108 0 1914 131 3 50 chr15 37882321 37882618 -63497903 - AluSx SINE Alu -29 283 1 361 198 0 12 chr15 37882620 37882701 -63497820 - L1PB4 LINE L1 -4 6152 6073 693 167 47 11 chr15 37882721 37882925 -63497596 + LTR1 LTR ERV1 1 252 -533 * 1290 68 117 10 chr15 37882921 37883127 -63497394 + LTR1 LTR ERV1 558 785 0 3859 131 5 2 chr15 37883129 37883725 -63496796 - L1PA16 LINE L1 -122 6044 5447 228 196 20 0 chr15 37883726 37883777 -63496744 + L1M4 LINE L1 2984 3035 -3111 1449 159 13 121 chr15 37883782 37884096 -63496425 + AluJo SINE Alu 1 280 -32 515 178 0 9 chr15 37884106 37884213 -63496308 + GA-rich Low_complexity Low_complexity 2 107 0 2593 193 17 52 chr15 37884230 37884883 -63495638 - L1 LINE L1 -743 5403 4774 1215 184 12 0 chr15 37884917 37885162 -63495359 + L1MB1 LINE L1 5938 6185 -4 790 164 29 18 chr15 37885201 37885372 -63495149 + L1MA10 LINE L1 6161 6333 -1 575 215 114 13 chr15 37885389 37885626 -63494895 + L1M4 LINE L1 3052 3312 -2834 240 236 18 0 chr15 37885626 37885681 -63494840 + MIR3 SINE MIR 128 183 -25 777 251 67 50 chr15 37886875 37887234 -63493287 - MLT1A1 LTR MaLR 0 365 1 273 301 29 0 chr15 37887928 37888031 -63492490 - MIR SINE MIR 0 262 157 2294 100 0 7 chr15 37888198 37888498 -63492023 + AluSx SINE Alu 1 298 -14 2396 132 22 27 chr15 37888749 37889158 -63491363 - MSTB1 LTR MaLR -2 430 24 333 335 118 32 chr15 37889529 37890104 -63490417 + L1MEd LINE L1 672 1197 -1293 1751 174 33 10 chr15 37890104 37890403 -63490118 - AluJo SINE Alu -6 306 1 333 335 118 32 chr15 37890403 37890430 -63490091 + L1MEd LINE L1 1197 1220 -1270 1833 165 3 25 chr15 37890430 37890746 -63489775 + AluJo SINE Alu 1 309 -3 333 335 118 32 chr15 37890746 37891044 -63489477 + L1MEd LINE L1 1220 1748 -742 2084 115 11 0 chr15 37891285 37891564 -63488957 + AluSx SINE Alu 1 282 -30 962 200 46 143 chr15 37891789 37892245 -63488276 + L1ME2 LINE L1 5726 6137 -27 284 117 67 17 chr15 37892835 37892895 -63487626 + MER5B DNA MER1_type 113 175 -3 299 170 38 0 chr15 37893168 37893221 -63487300 + Tigger5 DNA MER2_type 1 55 -2268 * 302 232 58 0 chr15 37893190 37893259 -63487262 + Tigger5 DNA MER2_type 2251 2323 0 388 253 50 10 chr15 37893900 37893999 -63486522 + MER91C DNA MER1_type 38 140 0 3178 94 11 0 chr15 37894212 37894647 -63485874 - LTR22A LTR ERVK -18 440 1 526 174 0 0 chr15 37895401 37895487 -63485034 - L2 LINE L2 -3 3310 3225 362 288 25 44 chr15 37897994 37898122 -63482399 + MIR SINE MIR 31 157 -105 2505 94 0 0 chr15 37898122 37898429 -63482092 + AluSc SINE Alu 1 307 -2 362 288 25 44 chr15 37898429 37898460 -63482061 + MIR SINE MIR 157 187 -75 337 278 45 118 chr15 37900157 37900488 -63480033 - L2 LINE L2 -5 3267 2961 329 255 0 29 chr15 37902030 37902132 -63478389 + MER5B DNA MER1_type 72 170 -8 808 229 78 5 chr15 37903040 37903134 -63477387 - MIR SINE MIR -16 246 160 2272 64 44 17 chr15 37903134 37903432 -63477089 + AluY SINE Alu 1 306 -5 808 229 78 5 chr15 37903432 37903555 -63476966 - MIR SINE MIR -102 160 13 769 198 4 110 chr15 37903619 37903856 -63476665 - MER20 DNA MER1_type -7 212 1 1334 199 54 51 chr15 37904371 37904743 -63475778 + MLT1B LTR MaLR 3 375 -15 635 217 126 14 chr15 37906985 37907192 -63473329 + MIR SINE MIR 14 243 -19 452 270 75 46 chr15 37907334 37907725 -63472796 + MLT1H LTR MaLR 26 549 0 288 322 0 11 chr15 37907729 37907819 -63472702 - L3 LINE CR1 -112 1465 1377 278 253 96 36 chr15 37909062 37909145 -63471376 - L2 LINE L2 -36 3277 3190 320 264 6 0 chr15 37910222 37910396 -63470125 + (CA)n Simple_repeat Simple_repeat 1 175 0 228 320 0 0 chr15 37910408 37910617 -63469904 + (CA)n Simple_repeat Simple_repeat 1 209 0 2532 55 0 3 chr15 37912300 37912629 -63467892 - L1PA6 LINE L1 -6 6148 5821 224 254 84 0 chr15 37912659 37912730 -63467791 - L2 LINE L2 -2 3270 3194 241 274 94 0 chr15 37913695 37913801 -63466720 + MER3 DNA MER1_type 1 116 -93 750 183 104 0 chr15 37918087 37918251 -63462270 - MER20 DNA MER1_type 0 219 39 271 271 93 17 chr15 37918308 37918426 -63462095 + MER94 DNA DNA 7 133 -1 483 253 213 15 chr15 37922914 37923116 -63457405 - MIR SINE MIR -1 261 20 384 239 57 25 chr15 37923119 37923139 -63457382 - L1MA10 LINE L1 0 6334 6315 718 216 165 17 chr15 37923139 37923375 -63457146 - L1ME2 LINE L1 -9 6155 5885 2337 112 3 0 chr15 37923760 37924065 -63456456 - AluSx SINE Alu -6 306 1 231 307 40 54 chr15 37924320 37924597 -63455924 + L1ME4a LINE L1 5814 6086 -35 330 224 12 0 chr15 37925210 37925295 -63455226 + L1ME3A LINE L1 6085 6170 0 1205 168 15 0 chr15 37925527 37925730 -63454791 + AluJo SINE Alu 84 289 -23 1661 164 75 14 chr15 37925963 37926256 -63454265 - AluJo SINE Alu -1 311 1 257 299 0 41 chr15 37926265 37926362 -63454159 + L1ME LINE L1 5714 5806 -315 1220 157 20 24 chr15 37926807 37927062 -63453459 - L1MB3 LINE L1 -10 6173 5920 1530 243 63 24 chr15 37927268 37927793 -63452728 + MLT1F LTR MaLR 32 542 0 356 194 0 0 chr15 37928065 37928127 -63452394 + LTR67 LTR ERVL 496 557 0 508 260 91 19 chr15 37928315 37928469 -63452052 - MIR SINE MIR 0 262 98 217 353 12 0 chr15 37929101 37929186 -63451335 - L2 LINE L2 -1 3312 3227 2513 81 0 0 chr15 37929187 37929494 -63451027 + AluY SINE Alu 1 307 -4 1076 151 25 5 chr15 37929591 37929790 -63450731 + L1MD3 LINE L1 7623 7825 -170 2283 100 3 3 chr15 37929913 37930203 -63450318 + AluSx SINE Alu 1 290 -22 2348 88 16 3 chr15 37930353 37930658 -63449863 + AluSc SINE Alu 1 309 0 26 74 0 0 chr15 37931570 37931624 -63448897 + AT_rich Low_complexity Low_complexity 1 54 0 26 30 0 0 chr15 37931770 37931803 -63448718 + AT_rich Low_complexity Low_complexity 1 33 0 2073 166 0 0 chr15 37932102 37932409 -63448112 + AluJb SINE Alu 1 307 -5 469 250 9 0 chr15 37932456 37932568 -63447953 + MARNA DNA Mariner 291 403 -183 21 0 0 0 chr15 37932855 37932876 -63447645 + AT_rich Low_complexity Low_complexity 1 21 0 2310 114 0 0 chr15 37932886 37933184 -63447337 - AluSx SINE Alu -12 300 3 211 350 125 8 chr15 37933236 37933356 -63447165 - MIR3 SINE MIR -65 143 10 1638 186 3 17 chr15 37933960 37934251 -63446270 + AluJo SINE Alu 21 305 -7 2300 61 3 27 chr15 37934507 37934875 -63445646 + AluY SINE Alu 1 311 0 1387 167 96 65 chr15 37935000 37935384 -63445137 + MSTD LTR MaLR 1 396 0 3905 127 24 56 chr15 37936018 37936783 -63443738 + L1MB2 LINE L1 5430 6169 -2 1731 155 3 30 chr15 37936925 37937221 -63443300 - AluJb SINE Alu -18 294 7 24 32 0 0 chr15 37937432 37937463 -63443058 + AT_rich Low_complexity Low_complexity 1 31 0 388 331 54 41 chr15 37937724 37937966 -63442555 - L2 LINE L2 0 3272 3028 1813 146 10 20 chr15 37938313 37938615 -63441906 - AluSx SINE Alu -13 299 1 207 0 0 0 chr15 37939268 37939291 -63441230 + (A)n Simple_repeat Simple_repeat 1 23 0 2572 199 46 52 chr15 37940122 37940394 -63440127 + L1ME1 LINE L1 5479 5751 -415 2310 79 7 16 chr15 37940394 37940698 -63439823 - AluY SINE Alu -10 301 1 2572 199 46 52 chr15 37940698 37941098 -63439423 + L1ME1 LINE L1 5751 6147 -19 1536 155 47 51 chr15 37941372 37941668 -63438853 + AluJo SINE Alu 1 295 -17 316 232 0 50 chr15 37941912 37942011 -63438510 + L1ME4a LINE L1 5975 6068 -53 23 0 0 0 chr15 37942606 37942629 -63437892 + AT_rich Low_complexity Low_complexity 1 23 0 2082 117 27 13 chr15 37943902 37944202 -63436319 + AluSx SINE Alu 1 304 -8 2126 133 3 3 chr15 37944661 37944963 -63435558 + AluSx SINE Alu 1 302 -10 2042 134 0 38 chr15 37945009 37945329 -63435192 - AluJo SINE Alu -4 308 1 338 296 273 23 chr15 37945736 37946132 -63434389 + L2 LINE L2 2819 3313 0 410 298 142 10 chr15 37947456 37947661 -63432860 - MIR SINE MIR -15 247 16 2180 117 0 3 chr15 37947966 37948293 -63432228 - AluSx SINE Alu 0 312 1 460 187 84 18 chr15 37948326 37948492 -63432029 - Charlie1a DNA MER1_type 0 1455 1279 3534 182 48 30 chr15 37948501 37949370 -63431151 - Charlie1a DNA MER1_type -316 1139 255 192 40 0 0 chr15 37949370 37949395 -63431126 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 2170 125 0 28 chr15 37949397 37949717 -63430804 + AluSq SINE Alu 1 311 -2 1235 213 12 0 chr15 37949725 37949965 -63430556 + AluJo SINE Alu 60 302 -10 264 262 16 0 chr15 37949968 37950029 -63430492 - Charlie1a DNA MER1_type -1207 248 187 826 207 9 70 chr15 37950059 37950272 -63430249 - Charlie1a DNA MER1_type -1250 205 6 1380 148 14 9 chr15 37950373 37950590 -63429931 + AluJb SINE Alu 1 218 -94 300 120 0 0 chr15 37950591 37950641 -63429880 + AluJb SINE Alu 85 134 -168 9122 41 5 9 chr15 37950643 37952546 -63427975 + L1PA5 LINE L1 4248 6147 -7 1105 162 0 0 chr15 37952604 37952777 -63427744 + AluJb SINE Alu 120 292 -20 211 316 0 40 chr15 37953210 37953310 -63427211 - MIR SINE MIR -68 140 56 1656 155 61 0 chr15 37953580 37953844 -63426677 - AluJo SINE Alu -21 291 12 951 222 68 0 chr15 37953883 37954090 -63426431 + MER58A DNA MER1_type 1 221 -3 229 26 53 0 chr15 37955181 37955219 -63425302 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 33 90 0 0 chr15 37955484 37955573 -63424948 + AT_rich Low_complexity Low_complexity 1 89 0 3385 157 29 7 chr15 37955766 37956386 -63424135 + L1MB8 LINE L1 5488 6121 -57 1548 210 10 16 chr15 37956386 37956691 -63423830 - AluJb SINE Alu -9 303 1 947 212 22 0 chr15 37956722 37956906 -63423615 - MER5A DNA MER1_type -1 188 1 787 252 97 8 chr15 37957094 37957332 -63423189 - MIR SINE MIR -3 259 1 1663 126 0 40 chr15 37958306 37958402 -63422119 + AluSq SINE Alu 42 140 -173 2073 125 0 20 chr15 37958402 37958706 -63421815 + AluSx SINE Alu 1 298 -14 1663 126 0 40 chr15 37958706 37958887 -63421634 + AluSq SINE Alu 140 308 -5 388 324 21 28 chr15 37959428 37959570 -63420951 + MER5A DNA MER1_type 1 141 -48 2032 116 0 0 chr15 37959584 37959914 -63420607 + AluSx SINE Alu 1 330 0 286 258 0 0 chr15 37960200 37960262 -63420259 + MIR SINE MIR 84 145 -117 1959 292 66 19 chr15 37960331 37961339 -63419182 - L2 LINE L2 -2 3311 2256 251 339 69 15 chr15 37961927 37962057 -63418464 + L2 LINE L2 3133 3269 -3 252 284 255 34 chr15 37963714 37963922 -63416599 + MIR SINE MIR 9 262 0 737 173 54 43 chr15 37963982 37964167 -63416354 + MER5A DNA MER1_type 1 187 -2 789 214 94 20 chr15 37964178 37964379 -63416142 - MER20 DNA MER1_type -1 218 3 408 236 207 0 chr15 37964389 37964539 -63415982 - MER5A DNA MER1_type 0 189 4 26 50 0 0 chr15 37965735 37965775 -63414746 + AT_rich Low_complexity Low_complexity 1 40 0 247 329 0 0 chr15 37967104 37967174 -63413347 + MER5A DNA MER1_type 45 114 -75 25 65 0 0 chr15 37967401 37967447 -63413074 + AT_rich Low_complexity Low_complexity 1 46 0 1465 267 114 7 chr15 37967480 37968065 -63412456 - HAL1 LINE L1 -405 2102 1455 1299 259 48 73 chr15 37968118 37968655 -63411866 + L1MB1 LINE L1 764 1287 -5366 1110 243 3 10 chr15 37968946 37969238 -63411283 + L1MB1 LINE L1 1494 1783 -4870 1379 203 24 71 chr15 37969245 37969709 -63410812 + L1MB1 LINE L1 3949 4390 -2342 * 4698 159 26 23 chr15 37969687 37970155 -63410366 + L1MB1 LINE L1 5378 5843 -911 1934 144 32 12 chr15 37970155 37970431 -63410090 - MER7A DNA MER2_type -2692 346 62 1728 52 0 9 chr15 37970431 37970641 -63409880 + AluY SINE Alu 1 208 -103 1934 144 32 12 chr15 37970641 37970705 -63409816 - MER7A DNA MER2_type -2976 62 1 4698 159 26 23 chr15 37970705 37971611 -63408910 + L1MB1 LINE L1 5843 6752 -2 1997 148 20 0 chr15 37972160 37972465 -63408056 - AluJb SINE Alu -1 311 1 27 29 0 0 chr15 37973728 37973762 -63406759 + AT_rich Low_complexity Low_complexity 1 34 0 4241 148 29 4 chr15 37973763 37974738 -63405783 - L1MA8 LINE L1 -268 6023 5030 710 236 46 15 chr15 37975548 37975743 -63404778 + MIR SINE MIR 56 256 -6 1435 102 12 136 chr15 37975980 37976343 -63404178 - AluY SINE Alu 0 323 1 636 129 20 0 chr15 37976369 37976470 -63404051 + AluSg/x SINE Alu 189 291 -19 492 68 0 0 chr15 37976471 37976544 -63403977 + (GA)n Simple_repeat Simple_repeat 1 73 0 348 224 229 6 chr15 37976630 37976800 -63403721 + L1M4 LINE L1 4458 4665 -1481 746 191 16 0 chr15 37976801 37976927 -63403594 + FLAM_A SINE Alu 1 128 -5 1817 160 10 24 chr15 37976974 37977267 -63403254 - AluJb SINE Alu -23 289 1 1999 131 24 3 chr15 37977272 37977569 -63402952 - AluSp SINE Alu -10 303 1 2285 94 0 3 chr15 37977774 37978072 -63402449 - AluSq SINE Alu -16 297 1 1828 177 0 0 chr15 37978323 37978617 -63401904 + AluJb SINE Alu 1 294 -18 703 192 16 35 chr15 37978643 37978955 -63401566 + MLT1A1 LTR MaLR 1 396 0 395 333 74 28 chr15 37978955 37979207 -63401314 + L1ME3A LINE L1 5368 5634 -528 650 214 78 89 chr15 37979307 37979564 -63400957 + MER77 LTR ERV1 130 383 -222 241 238 95 24 chr15 37979576 37979660 -63400861 + MER68 LTR ERV1 254 343 -219 454 219 19 0 chr15 37979748 37979853 -63400668 + MER77 LTR ERV1 499 605 0 315 276 45 37 chr15 37979853 37980020 -63400501 + L1ME3A LINE L1 5723 5889 -307 1880 124 14 21 chr15 37980757 37981047 -63399474 - AluSx SINE Alu -22 290 3 436 200 208 8 chr15 37981099 37981219 -63399302 + Tigger1 DNA MER2_type 1 144 -2274 2105 118 10 0 chr15 37981223 37981512 -63399009 - AluSx SINE Alu -20 292 1 949 165 65 15 chr15 37981534 37981734 -63398787 + Tigger1 DNA MER2_type 2209 2418 0 596 271 44 33 chr15 37981741 37981922 -63398599 - MIR3 SINE MIR -10 198 16 376 304 62 0 chr15 37982209 37982321 -63398200 - L2 LINE L2 0 3272 3154 1909 162 26 3 chr15 37984213 37984516 -63396005 - AluJb SINE Alu -2 310 1 1987 149 0 3 chr15 37985043 37985339 -63395182 - AluJb SINE Alu -17 295 1 23 0 0 0 chr15 37985745 37985768 -63394753 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr15 37986207 37986228 -63394293 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr15 37986885 37986916 -63393605 + AT_rich Low_complexity Low_complexity 1 31 0 680 204 99 7 chr15 37987438 37987590 -63392931 - FRAM SINE Alu 0 166 1 2310 65 0 31 chr15 37987688 37987979 -63392542 - AluY SINE Alu -13 298 17 455 271 44 17 chr15 37988777 37988958 -63391563 - L1MC5 LINE L1 -80 7881 7696 1668 131 23 65 chr15 37988989 37989295 -63391226 - AluJo SINE Alu -19 293 1 318 245 41 20 chr15 37989307 37989405 -63391116 - L1MC5 LINE L1 -262 7699 7600 322 301 125 0 chr15 37989600 37989736 -63390785 + L2 LINE L2 3161 3313 0 1852 242 153 14 chr15 37989858 37990264 -63390257 + L2 LINE L2 1748 2096 -1218 1936 137 7 3 chr15 37990264 37990549 -63389972 - AluSx SINE Alu -26 286 1 1852 242 153 14 chr15 37990549 37990861 -63389660 + L2 LINE L2 2096 2566 -748 570 225 191 65 chr15 37990858 37991151 -63389370 + L2 LINE L2 2967 3296 -17 * 375 270 74 18 chr15 37992230 37992393 -63388128 + MER104 DNA Tc2 1 172 -8 891 150 0 0 chr15 37992906 37993039 -63387482 - FLAM_C SINE Alu 0 133 1 309 51 0 0 chr15 37993217 37993256 -63387265 + (TG)n Simple_repeat Simple_repeat 2 40 0 1491 178 18 32 chr15 37993366 37993497 -63387024 + AluJo SINE Alu 1 132 -180 2247 121 0 6 chr15 37993497 37993811 -63386710 + AluSx SINE Alu 1 312 0 1491 178 18 32 chr15 37993811 37993960 -63386561 + AluJo SINE Alu 132 277 -35 22 0 0 0 chr15 37993961 37993983 -63386538 + AT_rich Low_complexity Low_complexity 1 22 0 264 273 0 0 chr15 37994174 37994229 -63386292 + (CA)n Simple_repeat Simple_repeat 2 56 0 2070 121 17 0 chr15 37994263 37994552 -63385969 - AluSx SINE Alu -18 294 1 300 357 18 0 chr15 37994663 37994775 -63385746 - MIR SINE MIR -55 153 40 742 220 13 0 chr15 37996160 37996310 -63384211 + MER58A DNA MER1_type 5 156 0 227 229 0 0 chr15 37996310 37996357 -63384164 + MER58A DNA MER1_type 178 224 0 202 413 58 0 chr15 37996368 37996489 -63384032 - L2 LINE L2 -12 3260 3133 244 343 94 33 chr15 37996559 37996846 -63383675 - L2 LINE L2 -257 3015 2716 835 101 92 0 chr15 37996917 37997036 -63383485 + AluSx SINE Alu 1 130 -182 1390 123 0 5 chr15 37997112 37997307 -63383214 + AluSx SINE Alu 115 308 -1 365 180 11 0 chr15 37997720 37997809 -63382712 + GA-rich Low_complexity Low_complexity 1 90 0 517 316 18 53 chr15 37997836 37998175 -63382346 + L1M4 LINE L1 3798 4124 -2022 2262 82 0 7 chr15 37998196 37998538 -63381983 + AluY SINE Alu 1 311 0 206 291 12 70 chr15 37998574 37998660 -63381861 - L2 LINE L2 -655 2659 2579 2276 78 16 26 chr15 37998724 37999031 -63381490 - AluSp SINE Alu -9 304 1 261 174 0 130 chr15 38000691 38000732 -63379789 - MIR SINE MIR -30 232 208 2149 109 3 26 chr15 38000732 38001043 -63379478 - AluSx SINE Alu -8 304 1 261 174 0 130 chr15 38001043 38001093 -63379428 - MIR SINE MIR -54 208 153 1395 223 78 1 chr15 38001098 38001443 -63379078 - L1MB5 LINE L1 -1 6173 5804 36126 78 17 7 chr15 38001507 38007590 -63372931 - L1PA6 LINE L1 0 6154 11 267 203 0 0 chr15 38007601 38007665 -63372856 - L1MB5 LINE L1 -350 5824 5761 * 675 275 75 46 chr15 38007658 38009084 -63371437 - L1M4c LINE L1 -4983 1663 5 365 266 125 23 chr15 38009090 38009218 -63371303 - MIR SINE MIR -111 151 11 180 111 0 0 chr15 38009256 38009283 -63371238 + (T)n Simple_repeat Simple_repeat 1 27 0 4041 146 30 20 chr15 38009512 38010176 -63370345 + L1MC1 LINE L1 5588 6261 -72 1550 195 13 27 chr15 38010176 38010348 -63370173 - AluJb SINE Alu -12 300 132 2113 125 7 0 chr15 38010348 38010643 -63369878 - AluSp SINE Alu -16 297 1 1550 195 13 27 chr15 38010643 38010768 -63369753 - AluJb SINE Alu -180 132 7 4041 146 30 20 chr15 38010768 38010836 -63369685 + L1MC1 LINE L1 6261 6327 -6 2139 123 0 32 chr15 38010981 38011291 -63369230 - AluSx SINE Alu -12 300 1 1616 193 4 4 chr15 38011358 38011628 -63368893 - AluSx SINE Alu -18 294 25 1562 192 23 7 chr15 38011927 38012229 -63368292 - AluJb SINE Alu -5 307 1 1961 168 43 36 chr15 38012349 38012765 -63367756 + MSTB1 LTR MaLR 1 419 -13 404 279 92 9 chr15 38012810 38013050 -63367471 + L1ME LINE L1 5592 5848 -303 362 299 93 52 chr15 38013225 38013493 -63367028 + L1ME4a LINE L1 5662 5940 -181 2047 151 7 0 chr15 38013640 38013938 -63366583 - AluSq SINE Alu -13 300 1 2510 211 50 73 chr15 38014051 38014355 -63366166 + L1M4 LINE L1 16 325 -6217 1809 119 0 4 chr15 38014355 38014599 -63365922 - AluSx SINE Alu -33 279 37 2510 211 50 73 chr15 38014599 38015047 -63365474 + L1M4 LINE L1 325 751 -5791 1037 179 60 63 chr15 38015046 38015302 -63365219 + L1MB7 LINE L1 5876 6132 -52 * 1645 195 10 7 chr15 38015302 38015599 -63364922 + AluJb SINE Alu 1 298 -14 1037 179 60 63 chr15 38015599 38015644 -63364877 + L1MB7 LINE L1 6132 6176 -8 432 141 165 16 chr15 38015936 38016057 -63364464 - L1ME4a LINE L1 -9 6112 5974 25 0 0 0 chr15 38016222 38016247 -63364274 + AT_rich Low_complexity Low_complexity 1 25 0 232 211 193 0 chr15 38016747 38016804 -63363717 - MIR3 SINE MIR -28 180 113 2441 70 0 3 chr15 38016846 38017145 -63363376 - AluY SINE Alu -13 298 1 2039 90 83 0 chr15 38017650 38017928 -63362593 - AluSq SINE Alu -12 301 1 2312 137 25 23 chr15 38018360 38018674 -63361847 + L1MB4 LINE L1 5743 6060 -120 1768 191 0 10 chr15 38018674 38018972 -63361549 + AluSx SINE Alu 1 295 -17 2312 137 25 23 chr15 38018972 38019094 -63361427 + L1MB4 LINE L1 6060 6180 0 204 125 0 0 chr15 38019879 38019911 -63360610 + (TA)n Simple_repeat Simple_repeat 1 32 0 5624 108 58 27 chr15 38019911 38021361 -63359160 - L1PA13 LINE L1 -1 6162 4694 2343 102 0 0 chr15 38021445 38021740 -63358781 + AluSx SINE Alu 1 295 -17 4568 199 99 18 chr15 38021740 38023016 -63357505 + Charlie1a DNA MER1_type 76 1455 0 219 280 40 13 chr15 38023080 38023155 -63357366 + MIR3 SINE MIR 125 201 -7 1875 132 14 11 chr15 38023597 38023912 -63356609 + AluJo SINE Alu 1 316 0 2861 13 0 0 chr15 38024866 38025177 -63355344 + AluYb8 SINE Alu 1 311 -7 2200 105 3 3 chr15 38025299 38025604 -63354917 + AluSx SINE Alu 1 305 -7 1142 130 0 0 chr15 38025661 38025815 -63354706 + AluSg/x SINE Alu 135 288 -22 248 254 202 9 chr15 38026073 38026187 -63354334 + L2 LINE L2 3177 3312 -1 1580 154 84 0 chr15 38026646 38026944 -63353577 + MER7A DNA MER2_type 1 321 -25 226 174 29 29 chr15 38026991 38027060 -63353461 + (TA)n Simple_repeat Simple_repeat 1 69 0 285 292 117 8 chr15 38029038 38029158 -63351363 + L3 LINE CR1 1428 1560 -17 768 139 366 14 chr15 38029903 38030119 -63350402 + AluJo SINE Alu 1 292 -20 24 0 0 29 chr15 38030294 38030305 -63350216 + AT_rich Low_complexity Low_complexity 1 11 -23 1660 156 10 10 chr15 38030305 38030593 -63349928 + AluJb SINE Alu 3 290 -22 24 0 0 29 chr15 38030593 38030616 -63349905 + AT_rich Low_complexity Low_complexity 11 34 0 1269 263 84 23 chr15 38031936 38032460 -63348061 - L1MC4a LINE L1 -1736 6072 5517 2329 88 3 0 chr15 38032460 38032754 -63347767 + AluSp SINE Alu 1 295 -18 2295 93 0 19 chr15 38032803 38033113 -63347408 - AluSx SINE Alu -8 304 1 198 0 0 0 chr15 38033127 38033149 -63347372 + (A)n Simple_repeat Simple_repeat 1 22 0 2006 141 0 3 chr15 38033934 38034232 -63346289 + AluJb SINE Alu 12 308 -4 472 271 65 32 chr15 38034302 38034457 -63346064 - MIR SINE MIR -29 233 74 1859 147 18 3 chr15 38036613 38036899 -63343622 + AluSx SINE Alu 1 290 -22 247 315 8 16 chr15 38036904 38037031 -63343490 + L1 LINE L1 3661 3786 -2360 1017 119 0 0 chr15 38037116 38037250 -63343271 + AluSq/x SINE Alu 1 134 -178 2201 99 3 7 chr15 38037252 38037544 -63342977 + AluSg SINE Alu 1 291 -19 1741 194 19 33 chr15 38037959 38038325 -63342196 - MLT1A2 LTR MaLR -13 361 1 969 184 0 6 chr15 38039851 38040009 -63340512 - FAM SINE Alu -19 166 10 24 32 0 0 chr15 38040263 38040294 -63340227 + AT_rich Low_complexity Low_complexity 1 31 0 213 39 0 0 chr15 38040608 38040634 -63339887 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 2146 126 0 10 chr15 38040729 38041031 -63339490 + AluSx SINE Alu 6 304 -8 424 254 76 0 chr15 38042563 38042681 -63337840 - MER94 DNA DNA -4 130 4 359 43 0 0 chr15 38043146 38043193 -63337328 + MADE1 DNA Mariner 1 47 -33 728 199 0 15 chr15 38043904 38044035 -63336486 - FLAM_C SINE Alu -4 129 1 241 306 12 0 chr15 38044165 38044250 -63336271 - L1 LINE L1 -2412 3734 3649 264 273 30 15 chr15 38044360 38044426 -63336095 + LTR67 LTR ERVL 114 180 -377 413 291 35 35 chr15 38044638 38044810 -63335711 + LTR67 LTR ERVL 384 555 -2 2505 151 5 10 chr15 38044938 38045328 -63335193 + MLT1B LTR MaLR 1 388 -2 1752 197 0 0 chr15 38045737 38046031 -63334490 + AluJo SINE Alu 1 294 -18 979 339 66 40 chr15 38046159 38047081 -63333440 + ERVL LTR ERVL 788 1696 -3958 591 317 76 35 chr15 38047109 38047478 -63333043 + ERVL LTR ERVL 1796 2179 -3585 611 309 45 45 chr15 38047565 38047808 -63332713 - MIR SINE MIR -1 261 19 271 223 117 11 chr15 38048772 38048866 -63331655 - L1ME4a LINE L1 -4 6117 6014 1817 154 20 10 chr15 38048983 38049281 -63331240 + AluJb SINE Alu 1 301 -11 2343 106 0 3 chr15 38049503 38049805 -63330716 + AluSx SINE Alu 1 301 -11 883 251 103 45 chr15 38049864 38050184 -63330337 - L1MC4a LINE L1 -458 5696 5601 2307 86 3 13 chr15 38050184 38050485 -63330036 - AluY SINE Alu -13 298 1 883 251 103 45 chr15 38050485 38050549 -63329972 - L1MC4a LINE L1 -553 5601 5542 22 0 0 0 chr15 38050557 38050579 -63329942 + AT_rich Low_complexity Low_complexity 1 22 0 377 299 134 31 chr15 38050579 38050840 -63329681 + L1MC/D LINE L1 4914 5201 -945 441 0 0 0 chr15 38050851 38050900 -63329621 + (CA)n Simple_repeat Simple_repeat 2 50 0 559 152 0 30 chr15 38050905 38051004 -63329517 + L1MCa LINE L1 4 99 -6327 631 217 5 63 chr15 38051004 38051071 -63329450 - L1M4 LINE L1 -3649 2497 2428 2023 143 7 7 chr15 38051071 38051372 -63329149 + AluSq SINE Alu 1 301 -12 631 217 5 63 chr15 38051372 38051525 -63328996 - L1M4 LINE L1 -3718 2428 2290 207 100 0 0 chr15 38051574 38051604 -63328917 + (GTTTG)n Simple_repeat Simple_repeat 2 31 0 2186 100 0 21 chr15 38051611 38051902 -63328619 - AluSq SINE Alu -26 287 3 235 168 0 0 chr15 38052057 38052105 -63328416 - Alu SINE Alu 0 133 91 293 309 57 26 chr15 38052105 38052299 -63328222 + L1MC/D LINE L1 5372 5571 -2237 21 57 0 0 chr15 38052412 38052447 -63328074 + AT_rich Low_complexity Low_complexity 1 35 0 868 183 0 0 chr15 38052541 38052672 -63327849 - FLAM_A SINE Alu -1 132 2 357 24 0 0 chr15 38053032 38053074 -63327447 + (TTCA)n Simple_repeat Simple_repeat 4 45 0 636 348 19 75 chr15 38053077 38053545 -63326976 - L2 LINE L2 -12 3260 2819 347 292 35 9 chr15 38053575 38053688 -63326833 - L2 LINE L2 -5 3308 3193 237 346 19 9 chr15 38053713 38053820 -63326701 - L2 LINE L2 -541 2773 2666 6099 99 8 3 chr15 38053876 38054736 -63325785 - L1PA8A LINE L1 -1594 4552 3689 5511 87 17 5 chr15 38054735 38055949 -63324572 + L1PA8A LINE L1 4559 5781 -350 * 2257 119 6 0 chr15 38055949 38056260 -63324261 + AluSp SINE Alu 1 313 0 15525 140 12 106 chr15 38056279 38059602 -63320919 + L1PA7 LINE L1 12 3023 -3123 6846 72 21 1 chr15 38059587 38061237 -63319284 + L1PA7 LINE L1 4402 6075 -79 * 1356 97 0 0 chr15 38061241 38061416 -63319105 - AluSg/x SINE Alu -16 296 122 718 91 0 66 chr15 38061416 38061537 -63318984 + L1MB4 LINE L1 6068 6180 0 1019 173 0 0 chr15 38062540 38062708 -63317813 - FRAM SINE Alu -8 168 1 2170 114 0 10 chr15 38063698 38063995 -63316526 - AluSg SINE Alu -16 294 1 2261 91 0 7 chr15 38064533 38064829 -63315692 - AluSc SINE Alu -15 294 1 1989 146 3 3 chr15 38064947 38065242 -63315279 + AluSx SINE Alu 1 295 -17 26 0 0 0 chr15 38065433 38065459 -63315062 + AT_rich Low_complexity Low_complexity 1 26 0 3809 217 42 82 chr15 38066417 38066670 -63313851 + L1 LINE L1 4046 4307 -1839 2446 121 131 8 chr15 38066670 38067051 -63313470 - MSTA LTR MaLR 0 428 1 3809 217 42 82 chr15 38067051 38067465 -63313056 + L1 LINE L1 4307 4736 -1410 2098 121 72 32 chr15 38067465 38067813 -63312708 + THE1B LTR MaLR 3 364 0 3809 217 42 82 chr15 38067813 38067870 -63312651 + L1 LINE L1 4736 4794 -1352 2148 100 17 17 chr15 38067870 38068171 -63312350 + AluSx SINE Alu 3 303 -9 3809 217 42 82 chr15 38068171 38068755 -63311766 + L1 LINE L1 4794 5304 -842 412 254 18 130 chr15 38068997 38069166 -63311355 + FRAM SINE Alu 1 150 -26 186 43 0 0 chr15 38069166 38069189 -63311332 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1999 151 27 18 chr15 38070451 38070828 -63309693 + L1MB4 LINE L1 5247 5626 -548 2180 166 41 9 chr15 38070828 38071272 -63309249 + MLT2D LTR ERVL 1 455 -9 2849 167 51 13 chr15 38071299 38071398 -63309123 + L1MB4 LINE L1 5621 5715 -465 4118 183 48 45 chr15 38071398 38072349 -63308172 - LTR13 LTR ERVK 0 954 1 2849 167 51 13 chr15 38072349 38072783 -63307738 + L1MB4 LINE L1 5715 6174 -6 398 121 72 60 chr15 38072802 38072885 -63307636 + L1MB8 LINE L1 6093 6176 -2 235 259 69 0 chr15 38072891 38072949 -63307572 - MLT1F1 LTR MaLR -428 139 78 390 157 248 8 chr15 38073123 38073244 -63307277 - HAL1 LINE L1 -220 2287 2138 1418 234 172 65 chr15 38073245 38073800 -63306721 - HAL1 LINE L1 -554 1953 1272 1712 171 3 23 chr15 38073800 38074104 -63306417 - AluJo SINE Alu -14 298 1 1418 234 172 65 chr15 38074104 38074410 -63306111 - HAL1 LINE L1 -1235 1272 1000 1429 177 7 56 chr15 38074555 38074843 -63305678 - AluJo SINE Alu -11 301 28 1156 101 70 159 chr15 38074937 38075113 -63305408 - MER46A DNA MER2_type -2495 236 89 2135 118 7 0 chr15 38075113 38075402 -63305119 + AluSx SINE Alu 1 291 -21 1156 101 70 159 chr15 38075402 38075483 -63305038 - MER46A DNA MER2_type -2642 89 2 2185 109 0 0 chr15 38075673 38075956 -63304565 - AluSx SINE Alu -26 286 4 452 276 52 11 chr15 38076096 38076270 -63304251 - HAL1 LINE L1 -2298 209 29 516 362 77 50 chr15 38076363 38076948 -63303573 + L2 LINE L2 2672 3270 -2 1847 226 26 19 chr15 38077478 38077894 -63302627 - LTR52 LTR ERVL -2 419 1 509 326 78 12 chr15 38078239 38078481 -63302040 - MIR SINE MIR -3 259 2 2049 150 0 6 chr15 38078701 38079014 -63301507 - AluSx SINE Alu -1 311 1 5438 149 11 27 chr15 38079224 38080189 -63300332 + L1MB2 LINE L1 5226 6170 -1 2384 83 0 29 chr15 38080193 38080506 -63300015 + AluSx SINE Alu 1 304 -8 1928 170 0 3 chr15 38080957 38081269 -63299252 - AluJb SINE Alu -1 311 1 207 0 0 0 chr15 38081354 38081377 -63299144 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr15 38082936 38082958 -63297563 + AT_rich Low_complexity Low_complexity 1 22 0 871 282 15 23 chr15 38083145 38083404 -63297117 - MIR SINE MIR -1 261 5 797 197 21 0 chr15 38083477 38083619 -63296902 + MER58B DNA MER1_type 197 341 0 389 291 185 43 chr15 38083704 38084006 -63296515 + L3 LINE CR1 1216 1560 -17 500 249 19 78 chr15 38084269 38084474 -63296047 - L2 LINE L2 0 3313 3121 321 305 117 13 chr15 38085416 38085570 -63294951 + MIR SINE MIR 93 262 0 2000 138 0 40 chr15 38085985 38086310 -63294211 - AluJb SINE Alu 0 312 1 297 268 89 38 chr15 38086860 38087017 -63293504 + L1ME4a LINE L1 5676 5840 -281 951 213 49 8 chr15 38087134 38087378 -63293143 - L1MA4 LINE L1 -5 6295 6042 248 124 180 11 chr15 38087459 38087548 -63292973 + L1ME4a LINE L1 6018 6121 0 23 0 0 53 chr15 38087928 38087943 -63292578 + AT_rich Low_complexity Low_complexity 1 15 -21 2170 92 7 20 chr15 38087943 38088236 -63292285 + AluSq SINE Alu 1 289 -24 23 0 0 53 chr15 38088236 38088258 -63292263 + AT_rich Low_complexity Low_complexity 15 36 0 1955 143 7 3 chr15 38088266 38088553 -63291968 + AluSx SINE Alu 9 296 -16 787 315 8 0 chr15 38088762 38089003 -63291518 + MIR SINE MIR 20 262 0 2021 197 18 59 chr15 38089103 38089377 -63291144 + L1M4 LINE L1 4787 5028 -1118 2207 125 0 0 chr15 38089377 38089673 -63290848 - AluSx SINE Alu -16 296 1 2021 197 18 59 chr15 38089673 38089961 -63290560 + L1M4 LINE L1 5028 5326 -820 * 11744 147 27 38 chr15 38089949 38092931 -63287590 + L1PA14 LINE L1 3193 6143 -18 257 184 0 0 chr15 38092941 38092990 -63287531 + L1M LINE L1 5320 5368 -936 2021 131 3 10 chr15 38092992 38093289 -63287232 + AluSx SINE Alu 1 295 -17 477 0 0 0 chr15 38094518 38094571 -63285950 + (CA)n Simple_repeat Simple_repeat 2 54 0 244 126 0 0 chr15 38095544 38095584 -63284937 + Alu SINE Alu 1 34 -266 956 97 0 8 chr15 38095686 38095810 -63284711 - AluSg1 SINE Alu -186 123 1 2023 145 3 3 chr15 38096314 38096610 -63283911 - AluSx SINE Alu -16 296 1 565 298 40 13 chr15 38096808 38096959 -63283562 + L2 LINE L2 3116 3270 -2 1682 181 10 29 chr15 38097048 38097362 -63283159 + AluJo SINE Alu 1 308 -4 1571 205 142 21 chr15 38098892 38099322 -63281199 - MLT1D LTR MaLR -4 501 20 467 294 0 8 chr15 38100162 38100281 -63280240 + L2 LINE L2 3151 3268 -4 22 35 0 0 chr15 38100368 38100397 -63280124 + AT_rich Low_complexity Low_complexity 1 29 0 1445 211 21 40 chr15 38100621 38100995 -63279526 - MLT1A2 LTR MaLR -4 370 4 1054 158 29 49 chr15 38101037 38101283 -63279238 + L1MB8 LINE L1 5935 6175 -3 450 279 44 7 chr15 38101719 38101855 -63278666 - MIR3 SINE MIR -21 187 47 22 35 0 0 chr15 38102762 38102791 -63277730 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr15 38103692 38103718 -63276803 + AT_rich Low_complexity Low_complexity 1 26 0 2418 98 0 16 chr15 38104378 38104694 -63275827 - AluSx SINE Alu 0 312 2 2518 69 3 0 chr15 38104770 38105073 -63275448 - AluSp SINE Alu -5 308 5 2428 79 0 10 chr15 38105299 38105602 -63274919 - AluSq SINE Alu -12 301 2 2009 138 0 0 chr15 38105612 38105917 -63274604 - AluSx SINE Alu 0 307 3 1441 134 4 13 chr15 38107639 38107871 -63272650 + MER96B DNA MER1_type? 1 230 -187 34 0 0 0 chr15 38109236 38109270 -63271251 + AT_rich Low_complexity Low_complexity 1 34 0 735 164 0 0 chr15 38109273 38109383 -63271138 - FLAM_C SINE Alu -32 111 2 2043 119 0 0 chr15 38109945 38110222 -63270299 - AluSx SINE Alu -2 310 34 329 244 23 12 chr15 38110383 38110469 -63270052 + MIR SINE MIR 35 121 -87 2177 110 3 3 chr15 38110496 38110788 -63269733 + AluSx SINE Alu 3 294 -18 1561 204 16 3 chr15 38110926 38111240 -63269281 + L1MD3 LINE L1 7398 7715 -280 320 116 29 14 chr15 38111247 38111316 -63269205 + L1MD3 LINE L1 7924 7993 -2 525 302 35 30 chr15 38112427 38112659 -63267862 - MIR SINE MIR -2 260 28 673 166 150 32 chr15 38113158 38113345 -63267176 + MER6B DNA MER2_type 1 209 -1 2167 115 0 3 chr15 38113359 38113655 -63266866 - AluSx SINE Alu -16 296 2 187 319 118 52 chr15 38115385 38115520 -63265001 - MIR3 SINE MIR -12 196 53 412 229 18 9 chr15 38115636 38115745 -63264776 - L2 LINE L2 -5 3308 3199 1681 159 3 24 chr15 38115931 38116243 -63264278 + AluJb SINE Alu 1 306 0 888 134 0 28 chr15 38116879 38117021 -63263500 + FLAM_C SINE Alu 1 138 -5 324 322 68 0 chr15 38117378 38117496 -63263025 - MIR3 SINE MIR 0 208 83 961 247 31 0 chr15 38118437 38118664 -63261857 - MIR SINE MIR -1 261 28 692 264 47 35 chr15 38118896 38119150 -63261371 + MIR SINE MIR 6 262 0 294 178 0 0 chr15 38120767 38120812 -63259709 - HsTC2 DNA Tc2 -612 1286 1242 258 307 0 0 chr15 38120810 38120885 -63259636 - HsTC2 DNA Tc2 -1780 118 44 * 2121 132 7 0 chr15 38121569 38121879 -63258642 - AluSx SINE Alu 0 312 1 309 346 56 26 chr15 38122333 38122567 -63257954 - L3b LINE CR1 -84 1499 1259 671 141 8 41 chr15 38122567 38122688 -63257833 - FLAM_A SINE Alu -6 136 20 3088 184 58 39 chr15 38122814 38123454 -63257067 - MER82 DNA MER2_type 0 653 2 1960 153 7 19 chr15 38123517 38123687 -63256834 + AluJb SINE Alu 1 167 -145 3190 56 99 7 chr15 38123687 38124132 -63256389 - LTR19A LTR ERV1 0 486 1 1960 153 7 19 chr15 38124132 38124269 -63256252 + AluJb SINE Alu 167 304 -8 846 219 32 14 chr15 38124296 38124515 -63256006 - L1MC4 LINE L1 -1013 7029 6807 2375 102 0 3 chr15 38124606 38124920 -63255601 - AluSq SINE Alu 0 313 1 604 225 14 7 chr15 38125042 38125180 -63255341 + MIR SINE MIR 43 181 -81 288 310 108 13 chr15 38125471 38125629 -63254892 + MIR SINE MIR 9 181 -81 637 242 39 22 chr15 38125751 38125929 -63254592 + MIR SINE MIR 21 201 -61 522 231 40 67 chr15 38126274 38126528 -63253993 - L1M LINE L1 -747 5423 5175 2243 109 0 25 chr15 38126530 38126850 -63253671 + AluSx SINE Alu 1 312 0 411 228 132 9 chr15 38126857 38127011 -63253510 - L1MCa LINE L1 -1537 4889 4718 882 146 0 0 chr15 38127012 38127142 -63253379 - AluSp/q SINE Alu -17 296 167 317 137 20 0 chr15 38127852 38127903 -63252618 - Alu SINE Alu -250 52 1 2261 98 0 0 chr15 38128018 38128305 -63252216 + AluSx SINE Alu 9 295 -17 2106 125 0 14 chr15 38128351 38128662 -63251859 + AluSx SINE Alu 1 307 0 491 249 85 28 chr15 38128664 38128841 -63251680 - MER5A DNA MER1_type 0 189 3 1599 158 32 45 chr15 38130239 38130431 -63250090 - AluJo SINE Alu -6 306 118 450 0 0 0 chr15 38130431 38130481 -63250040 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 1599 158 32 45 chr15 38130481 38130598 -63249923 - AluJo SINE Alu -194 118 1 381 216 62 21 chr15 38130999 38131096 -63249425 + Charlie7 DNA MER1_type 1 101 -2511 4814 138 102 111 chr15 38131098 38131678 -63248843 - L1MC3 LINE L1 -7 7778 7194 283 253 24 24 chr15 38131678 38131761 -63248760 - MLT1F1 LTR MaLR -443 124 42 4814 138 102 111 chr15 38131761 38132342 -63248179 - L1MC3 LINE L1 -591 7194 6546 7760 227 34 29 chr15 38132369 38133456 -63247065 - L1MCa LINE L1 -1751 4675 3595 2194 185 74 15 chr15 38133456 38133931 -63246590 - LTR22 LTR ERVK -4 505 3 7760 227 34 29 chr15 38133931 38134477 -63246044 - L1MCa LINE L1 -2831 3595 3053 2260 107 3 0 chr15 38134477 38134767 -63245754 + AluSg SINE Alu 2 292 -18 7760 227 34 29 chr15 38134767 38135279 -63245242 - L1MCa LINE L1 -3373 3053 2555 1951 125 60 0 chr15 38135279 38135560 -63244961 + AluSq SINE Alu 1 298 -15 7760 227 34 29 chr15 38135560 38135796 -63244725 - L1MCa LINE L1 -3871 2555 2322 1208 142 0 16 chr15 38135813 38136003 -63244518 - AluJ SINE Alu -1 311 125 399 211 0 0 chr15 38136004 38136094 -63244427 + (TATG)n Simple_repeat Simple_repeat 1 90 0 216 0 0 0 chr15 38136173 38136197 -63244324 + (TA)n Simple_repeat Simple_repeat 2 25 0 907 150 0 0 chr15 38136202 38136335 -63244186 - AluJ SINE Alu -169 133 1 1101 207 48 30 chr15 38136335 38136794 -63243727 - L1MCa LINE L1 -4275 2332 1769 2274 106 3 0 chr15 38136989 38137282 -63243239 - AluSg SINE Alu -16 294 1 892 259 42 63 chr15 38137358 38137783 -63242738 - HAL1b LINE L1 -709 639 224 2092 160 0 0 chr15 38137805 38138111 -63242410 - AluJb SINE Alu -4 308 3 461 248 139 84 chr15 38138281 38138519 -63242002 - L1MC4a LINE L1 -1571 6237 5987 1939 106 12 84 chr15 38138751 38139071 -63241450 + AluSx SINE Alu 1 297 -15 200 29 0 59 chr15 38139090 38139124 -63241397 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1570 84 31 0 chr15 38139126 38139317 -63241204 - AluSq SINE Alu -116 197 1 581 189 27 9 chr15 38139406 38139517 -63241004 + MIR SINE MIR 59 171 -91 2326 87 0 0 chr15 38139576 38139862 -63240659 + AluSc SINE Alu 1 286 -23 192 77 0 0 chr15 38139862 38139888 -63240633 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 195 207 180 72 chr15 38140603 38140714 -63239807 + L3b LINE CR1 1109 1231 -352 303 28 0 0 chr15 38140976 38141012 -63239509 + (GA)n Simple_repeat Simple_repeat 2 37 0 201 222 67 0 chr15 38141195 38141240 -63239281 + L3b LINE CR1 1298 1345 -238 242 296 70 0 chr15 38141293 38141364 -63239157 + L3b LINE CR1 1282 1357 -226 289 260 48 2 chr15 38142794 38142891 -63237630 + MER5B DNA MER1_type 1 99 -90 244 347 65 16 chr15 38142918 38143042 -63237479 - L2 LINE L2 -15 3257 3128 1903 146 0 17 chr15 38143751 38144046 -63236475 - AluJb SINE Alu -17 295 6 376 235 80 53 chr15 38144095 38144264 -63236257 + MIR SINE MIR 16 187 -58 240 316 22 15 chr15 38145226 38145362 -63235159 + CT-rich Low_complexity Low_complexity 1 137 0 302 140 18 0 chr15 38145861 38145918 -63234603 - L2 LINE L2 0 3313 3256 1008 251 70 48 chr15 38146006 38146219 -63234302 - L1ME4a LINE L1 -18 6103 5896 2153 129 0 19 chr15 38146219 38146537 -63233984 - AluSx SINE Alu 0 312 1 1008 251 70 48 chr15 38146537 38146806 -63233715 - L1ME4a LINE L1 -225 5896 5610 2593 70 0 3 chr15 38147326 38147639 -63232882 + AluSx SINE Alu 1 312 0 1294 187 111 16 chr15 38148507 38148822 -63231699 + MER2 DNA MER2_type 1 345 0 2487 87 0 3 chr15 38149028 38149337 -63231184 - AluSg SINE Alu -2 308 1 289 289 10 39 chr15 38150080 38150184 -63230337 + MIR SINE MIR 92 192 -70 345 256 13 0 chr15 38150573 38150651 -63229870 - L2 LINE L2 -2 3311 3233 405 272 59 94 chr15 38150760 38151014 -63229507 - L2 LINE L2 -19 3253 3009 589 312 50 10 chr15 38151483 38151685 -63228836 - MIR SINE MIR -25 237 28 2401 79 3 0 chr15 38151686 38151977 -63228544 - AluSg SINE Alu -11 299 8 1557 107 4 22 chr15 38152565 38152790 -63227731 + AluSc SINE Alu 76 296 -13 22 35 0 0 chr15 38152829 38152858 -63227663 + AT_rich Low_complexity Low_complexity 1 29 0 624 122 11 0 chr15 38152864 38152954 -63227567 - FLAM_C SINE Alu -25 118 28 1367 144 10 0 chr15 38152958 38153160 -63227361 + AluJo SINE Alu 88 291 -21 249 162 0 0 chr15 38153160 38153197 -63227324 - Alu SINE Alu -266 37 1 242 163 0 100 chr15 38153197 38153277 -63227244 - L1MA4 LINE L1 0 6300 6229 * 968 120 10 1 chr15 38153257 38153431 -63227090 - L1MA4 LINE L1 -7 6296 6116 2218 115 3 0 chr15 38153433 38153720 -63226801 + AluSx SINE Alu 1 288 -24 560 110 0 11 chr15 38153721 38153812 -63226709 + (CA)n Simple_repeat Simple_repeat 2 91 0 1140 138 11 77 chr15 38153854 38153912 -63226609 - L1MA4 LINE L1 -179 6121 6061 2307 120 0 0 chr15 38153912 38154212 -63226309 - AluSx SINE Alu -8 304 5 1140 138 11 77 chr15 38154212 38154413 -63226108 - L1MA4 LINE L1 -239 6061 5879 2300 139 11 0 chr15 38154992 38155351 -63225170 - MER47A DNA MER2_type 0 366 4 285 385 8 0 chr15 38155370 38155487 -63225034 - L2 LINE L2 -658 2656 2539 822 152 4 2 chr15 38155584 38155844 -63224677 + AluJb SINE Alu 4 309 -3 237 217 72 24 chr15 38155890 38155973 -63224548 - L2 LINE L2 -943 2371 2285 2323 102 0 0 chr15 38156043 38156337 -63224184 + AluSx SINE Alu 1 294 -18 278 336 35 35 chr15 38156339 38156565 -63223956 - L2 LINE L2 -1049 2265 2040 950 204 33 41 chr15 38158337 38158607 -63221914 - L2 LINE L2 0 3313 3046 558 261 121 19 chr15 38159324 38159532 -63220989 + MIR SINE MIR 15 244 -18 476 339 17 7 chr15 38159573 38159772 -63220749 - MIR SINE MIR -56 206 5 2248 101 0 3 chr15 38160489 38160809 -63219712 - AluSq SINE Alu 0 319 1 431 300 69 19 chr15 38160999 38161159 -63219362 - MIR SINE MIR -82 180 13 359 257 95 20 chr15 38161711 38161810 -63218711 - MIR SINE MIR -56 206 91 2251 98 7 3 chr15 38161810 38162105 -63218416 - AluY SINE Alu -15 296 1 359 257 95 20 chr15 38162105 38162153 -63218368 - MIR SINE MIR -171 91 48 213 266 97 0 chr15 38162491 38162559 -63217962 - MIR SINE MIR -95 113 47 2289 124 0 0 chr15 38169599 38169898 -63210623 - AluSq SINE Alu -14 299 1 2374 65 24 0 chr15 38170216 38170508 -63210013 - AluSx SINE Alu -13 299 1 1306 196 3 81 chr15 38172834 38173156 -63207365 - AluSq SINE Alu -12 301 5 1717 150 0 68 chr15 38173424 38173546 -63206975 + AluJb SINE Alu 22 151 -161 2138 114 34 0 chr15 38173546 38173844 -63206677 + AluSx SINE Alu 1 308 -4 1717 150 0 68 chr15 38173844 38174028 -63206493 + AluJb SINE Alu 151 307 -5 2431 86 0 0 chr15 38174129 38174433 -63206088 + AluSg SINE Alu 1 304 -6 1311 214 19 0 chr15 38174557 38174819 -63205702 + Tigger7 DNA MER2_type 1 267 -2220 382 252 19 28 chr15 38176786 38176893 -63203628 + MER5A DNA MER1_type 2 107 -82 2014 157 0 10 chr15 38177545 38177858 -63202663 + AluJb SINE Alu 1 310 -2 1388 184 29 36 chr15 38177860 38178138 -63202383 - AluJo SINE Alu -36 276 1 1788 176 23 3 chr15 38178939 38179240 -63201281 - AluJb SINE Alu -5 307 1 2158 89 43 0 chr15 38179969 38180250 -63200271 - AluSx SINE Alu -19 293 1 1750 167 0 14 chr15 38180878 38181160 -63199361 - AluJo SINE Alu -30 282 5 210 305 152 14 chr15 38181555 38181765 -63198756 + L2 LINE L2 2489 2727 -587 227 250 0 0 chr15 38181845 38181893 -63198628 + L2 LINE L2 3225 3272 0 829 94 0 0 chr15 38182052 38182158 -63198363 - U6 snRNA snRNA -1 106 1 289 333 78 35 chr15 38183068 38183209 -63197312 + MER5A DNA MER1_type 43 189 0 2247 57 43 7 chr15 38183233 38183513 -63197008 - AluY SINE Alu -21 290 1 1255 149 6 0 chr15 38183620 38183801 -63196720 + AluSc SINE Alu 1 182 -127 1189 253 33 14 chr15 38184894 38185257 -63195264 + L1ME3 LINE L1 5793 6162 0 307 185 93 139 chr15 38185336 38185487 -63195034 - L1MC/D LINE L1 -2330 5547 5404 1791 164 3 24 chr15 38185503 38185801 -63194720 - AluJb SINE Alu -20 292 1 590 192 64 24 chr15 38185935 38186060 -63194461 - AluJb SINE Alu -181 131 2 1602 201 96 11 chr15 38186061 38186499 -63194022 - L1MC/D LINE L1 -3057 3158 2684 1298 128 0 16 chr15 38186506 38186693 -63193828 - AluSx SINE Alu -9 301 118 1043 113 7 13 chr15 38186742 38186892 -63193629 - AluSq/x SINE Alu -163 149 1 694 104 10 0 chr15 38186897 38186993 -63193528 - AluSx SINE Alu -180 133 37 548 86 0 0 chr15 38187100 38187170 -63193351 - AluS SINE Alu -242 71 2 1714 210 49 62 chr15 38187171 38187413 -63193108 - L1MEc LINE L1 -3524 2691 2447 1682 194 13 10 chr15 38187413 38187712 -63192809 - AluJo SINE Alu -12 300 1 1714 210 49 62 chr15 38187712 38187850 -63192671 - L1MEc LINE L1 -3768 2447 2309 1636 185 0 40 chr15 38187850 38188152 -63192369 + AluJo SINE Alu 3 292 -20 1714 210 49 62 chr15 38188152 38188356 -63192165 - L1MEc LINE L1 -3906 2309 2104 2648 49 0 0 chr15 38188356 38188662 -63191859 - AluY SINE Alu -5 306 1 1714 210 49 62 chr15 38188662 38188730 -63191791 - L1MEc LINE L1 -4111 2104 2090 1932 104 4 0 chr15 38188730 38188981 -63191540 - AluSg SINE Alu -1 309 58 1714 210 49 62 chr15 38188981 38189015 -63191506 - L1MEc LINE L1 -4125 2090 2057 444 187 0 0 chr15 38189015 38189090 -63191431 + MER5A DNA MER1_type 1 75 -114 1580 175 7 25 chr15 38189089 38189369 -63191152 - AluJo SINE Alu -1 311 37 289 143 0 0 chr15 38189480 38189529 -63190992 + FAM SINE Alu 127 175 0 446 173 12 0 chr15 38189546 38189627 -63190894 + MER5A DNA MER1_type 108 189 0 316 300 105 5 chr15 38189628 38189838 -63190683 - L1MEc LINE L1 -4332 2064 1834 2368 96 3 3 chr15 38189951 38190264 -63190257 - AluSp SINE Alu 0 313 1 360 235 15 0 chr15 38190800 38190868 -63189653 + L2 LINE L2 3233 3301 -12 2432 74 7 0 chr15 38191145 38191443 -63189078 - AluY SINE Alu -11 300 1 378 329 68 59 chr15 38192167 38192404 -63188117 + MLT1L LTR MaLR 368 606 -9 2178 110 17 3 chr15 38192815 38193116 -63187405 + AluSx SINE Alu 1 305 -7 2008 125 0 14 chr15 38193295 38193583 -63186938 + AluSx SINE Alu 1 284 -28 357 271 92 46 chr15 38195431 38195715 -63184806 + L1ME4a LINE L1 5598 5894 -227 447 77 0 0 chr15 38195804 38195869 -63184652 + L1MA3 LINE L1 6241 6305 0 2206 114 0 3 chr15 38195891 38196189 -63184332 + AluSq SINE Alu 1 297 -16 450 0 0 0 chr15 38196189 38196239 -63184282 + (TA)n Simple_repeat Simple_repeat 2 51 0 1785 153 0 27 chr15 38196249 38196543 -63183978 + AluJb SINE Alu 7 292 -20 1313 157 20 137 chr15 38197802 38197985 -63182536 - AluYb8 SINE Alu -7 311 187 1747 68 0 0 chr15 38197985 38198190 -63182331 - AluSg/x SINE Alu -23 287 83 1313 157 20 137 chr15 38198190 38198357 -63182164 - AluYb8 SINE Alu -131 187 2 307 333 11 11 chr15 38198380 38198467 -63182054 - MIR SINE MIR -102 106 20 721 213 0 0 chr15 38198541 38198663 -63181858 + FLAM_C SINE Alu 2 123 -20 51 65 0 0 chr15 38198665 38198758 -63181763 + AT_rich Low_complexity Low_complexity 1 93 0 1139 152 0 0 chr15 38198772 38198937 -63181584 + AluJb SINE Alu 135 299 -13 2159 108 6 22 chr15 38199015 38199329 -63181192 + AluSx SINE Alu 1 309 -3 3259 139 44 2 chr15 38199494 38199969 -63180552 + LTR42 LTR ERVL 1 495 0 494 307 51 31 chr15 38200737 38200994 -63179527 + L2 LINE L2 2251 2512 -802 1310 178 23 5 chr15 38201489 38201708 -63178813 + AluJo SINE Alu 1 223 -89 727 212 0 0 chr15 38202424 38202542 -63177979 + FLAM_A SINE Alu 1 118 -15 40 0 0 0 chr15 38202542 38202582 -63177939 + AT_rich Low_complexity Low_complexity 1 40 0 240 319 121 0 chr15 38203963 38204054 -63176467 - L2 LINE L2 -37 3235 3134 27 49 0 0 chr15 38207227 38207268 -63173253 + AT_rich Low_complexity Low_complexity 1 41 0 2084 135 7 0 chr15 38207325 38207622 -63172899 + AluSx SINE Alu 1 299 -13 2317 93 0 26 chr15 38207766 38208077 -63172444 - AluSx SINE Alu -9 303 1 821 265 36 56 chr15 38208584 38208680 -63171841 - MIR SINE MIR -5 257 161 2375 64 0 0 chr15 38208680 38208960 -63171561 - AluSg SINE Alu -13 297 18 821 265 36 56 chr15 38208960 38209112 -63171409 - MIR SINE MIR -101 161 14 1847 142 0 48 chr15 38209687 38209997 -63170524 + AluJb SINE Alu 3 297 -15 1703 136 159 7 chr15 38210268 38210577 -63169944 - MER46B DNA MER2_type -4 232 2 291 244 154 57 chr15 38210643 38210766 -63169755 - AluJo SINE Alu -166 136 2 2109 128 0 23 chr15 38211450 38211754 -63168767 + AluSx SINE Alu 1 297 -15 213 233 0 0 chr15 38212095 38212138 -63168383 + CT-rich Low_complexity Low_complexity 2 44 0 2244 111 0 7 chr15 38213509 38213815 -63166706 + AluSg SINE Alu 1 304 -6 2407 97 0 0 chr15 38214277 38214587 -63165934 + AluSx SINE Alu 1 310 -2 2365 86 0 13 chr15 38214842 38215146 -63165375 + AluSg SINE Alu 1 300 -10 2401 67 3 0 chr15 38215676 38215960 -63164561 + AluSp SINE Alu 15 299 -14 2126 92 3 3 chr15 38217399 38217718 -63162803 + AluSq SINE Alu 1 319 0 1775 116 20 53 chr15 38217880 38218181 -63162340 - AluJo SINE Alu -21 291 1 617 217 8 16 chr15 38218498 38218627 -63161894 + FLAM_A SINE Alu 1 128 -5 1094 126 5 73 chr15 38218686 38218892 -63161629 + AluJo SINE Alu 97 288 -24 2386 93 0 0 chr15 38219143 38219443 -63161078 + AluSg SINE Alu 1 300 -10 1685 155 6 59 chr15 38219606 38219815 -63160706 - AluJb SINE Alu -6 306 118 2605 124 22 0 chr15 38219815 38220171 -63160350 + THE1B LTR MaLR 1 364 0 1685 155 6 59 chr15 38220171 38220284 -63160237 - AluJb SINE Alu -194 118 1 1715 174 10 10 chr15 38220366 38220660 -63159861 - AluJo SINE Alu -18 294 1 264 175 88 0 chr15 38221623 38221680 -63158841 + L2 LINE L2 3248 3309 -4 2393 90 0 0 chr15 38221936 38222236 -63158285 + AluSc SINE Alu 1 300 -9 306 286 13 0 chr15 38222503 38222580 -63157941 - L2 LINE L2 -2 3311 3234 2038 96 16 68 chr15 38222593 38222916 -63157605 + AluSq SINE Alu 1 306 -7 302 224 24 35 chr15 38222941 38223026 -63157495 - MIR SINE MIR -178 84 1 2294 97 0 7 chr15 38223152 38223461 -63157060 - AluSx SINE Alu -5 307 1 2432 80 3 0 chr15 38223546 38223848 -63156673 + AluSg SINE Alu 1 303 -7 2268 87 7 0 chr15 38223992 38224279 -63156242 + AluSq SINE Alu 5 293 -20 1473 191 29 35 chr15 38224639 38224986 -63155535 + AluJb SINE Alu 1 345 0 345 171 17 16 chr15 38225166 38225240 -63155281 + FLAM_A SINE Alu 61 117 -16 1860 157 0 7 chr15 38226531 38226824 -63153697 + AluSx SINE Alu 1 291 -21 860 250 113 98 chr15 38227463 38227813 -63152708 + L2 LINE L2 2337 2680 -633 2110 109 14 0 chr15 38227813 38228107 -63152414 + AluSg SINE Alu 1 298 -12 860 250 113 98 chr15 38228107 38228129 -63152392 + L2 LINE L2 2680 2700 -613 1411 159 17 29 chr15 38228129 38228368 -63152153 + MER46A DNA MER2_type 1 236 0 860 250 113 98 chr15 38228368 38228788 -63151733 + L2 LINE L2 2700 3132 -181 1230 235 125 37 chr15 38228788 38229312 -63151209 + MLT1G1 LTR MaLR 1 555 0 495 258 68 37 chr15 38229319 38229482 -63151039 + L2 LINE L2 3136 3303 -10 1425 198 37 4 chr15 38229560 38229828 -63150693 + AluJo SINE Alu 1 277 -35 207 0 0 0 chr15 38229834 38229857 -63150664 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2254 95 37 0 chr15 38230254 38230549 -63149972 + AluSx SINE Alu 1 306 -6 252 192 211 0 chr15 38230799 38230851 -63149670 - L2 LINE L2 -5 3308 3246 774 101 37 0 chr15 38231575 38231684 -63148837 - AluSq/x SINE Alu -199 113 1 975 147 49 38 chr15 38231732 38231916 -63148605 - Tigger2a DNA MER2_type -248 186 1 1467 163 32 4 chr15 38231916 38232162 -63148359 + Tigger2a DNA MER2_type 192 444 0 801 225 108 13 chr15 38232164 38232441 -63148080 - L1M4 LINE L1 -2886 3260 2984 576 128 51 17 chr15 38232441 38232558 -63147963 - L1MC3 LINE L1 0 7719 2849 591 207 107 8 chr15 38232567 38232688 -63147833 + AluJo SINE Alu 10 142 -170 2251 116 0 3 chr15 38232693 38233004 -63147517 + AluSq SINE Alu 4 313 0 379 94 0 0 chr15 38233005 38233058 -63147463 - L1MC3 LINE L1 -113 7672 7620 560 91 0 39 chr15 38233059 38233158 -63147363 - AluSg/x SINE Alu 0 302 207 885 144 5 113 chr15 38233188 38233250 -63147271 - L1MC3 LINE L1 -108 7677 7610 2240 119 0 0 chr15 38233250 38233545 -63146976 - AluSg SINE Alu -15 295 1 885 144 5 113 chr15 38233545 38233590 -63146931 - L1MC3 LINE L1 -175 7610 7562 2267 102 13 0 chr15 38233590 38233895 -63146626 - AluSx SINE Alu -3 309 1 885 144 5 113 chr15 38233895 38234008 -63146513 - L1MC3 LINE L1 -223 7562 7480 914 209 88 55 chr15 38234008 38234175 -63146346 - L1MC3 LINE L1 -3170 2910 2727 2219 107 7 0 chr15 38234175 38234465 -63146056 + AluSq SINE Alu 1 292 -21 914 209 88 55 chr15 38234465 38234604 -63145917 - L1MC3 LINE L1 -3353 2727 2594 1303 183 8 52 chr15 38234621 38234643 -63145878 - AluJo SINE Alu -21 291 270 2056 117 3 0 chr15 38234643 38234953 -63145568 + AluSq SINE Alu 1 311 0 1303 183 8 52 chr15 38234953 38235197 -63145324 - AluJo SINE Alu -42 270 36 2850 251 135 44 chr15 38235197 38235786 -63144735 - L1MC3 LINE L1 -3547 2533 1999 2228 108 0 0 chr15 38235786 38236081 -63144440 + AluSq SINE Alu 1 295 -18 2850 251 135 44 chr15 38236081 38236429 -63144092 - L1MC3 LINE L1 -4081 1999 1684 2130 125 3 6 chr15 38236429 38236742 -63143779 - AluSx SINE Alu 0 312 1 2850 251 135 44 chr15 38236742 38237606 -63142915 - L1MC3 LINE L1 -4396 1684 901 2517 72 0 7 chr15 38237606 38237911 -63142610 - AluSg SINE Alu -6 304 2 2850 251 135 44 chr15 38237911 38238381 -63142140 - L1MC3 LINE L1 -5179 901 2 550 335 51 4 chr15 38238678 38239031 -63141490 + L2 LINE L2 2720 3087 -185 1405 208 136 59 chr15 38239273 38239568 -63140953 - MER20B DNA MER1_type -28 755 484 1736 134 84 0 chr15 38239568 38239829 -63140692 + AluSg SINE Alu 6 288 -22 1405 208 136 59 chr15 38239829 38239961 -63140560 - MER20B DNA MER1_type -299 484 364 1713 158 37 3 chr15 38239961 38240258 -63140263 + AluSx SINE Alu 1 307 -5 1405 208 136 59 chr15 38240258 38240358 -63140163 - MER20B DNA MER1_type -419 364 186 570 136 88 61 chr15 38240363 38240438 -63140083 + L1MA8 LINE L1 6137 6208 -83 4299 173 53 24 chr15 38240438 38241040 -63139481 + MER6 DNA MER2_type 1 584 -281 2339 83 3 10 chr15 38241040 38241341 -63139180 - AluSc SINE Alu -10 299 1 1704 196 7 3 chr15 38241342 38241638 -63138883 - AluJo SINE Alu -11 301 5 4299 173 53 24 chr15 38241638 38241870 -63138651 + MER6 DNA MER2_type 583 861 -4 570 136 88 61 chr15 38241870 38241941 -63138580 + L1MA8 LINE L1 6208 6287 -4 2238 85 7 4 chr15 38241952 38242233 -63138288 + AluSq SINE Alu 1 282 -31 216 0 0 0 chr15 38242238 38242262 -63138259 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1717 177 0 35 chr15 38242281 38242598 -63137923 + AluJo SINE Alu 1 306 -6 1245 147 35 15 chr15 38242714 38242966 -63137555 - L1MB3 LINE L1 -15 6165 5914 1123 203 59 53 chr15 38242966 38243306 -63137215 + MER2 DNA MER2_type 3 344 0 1245 147 35 15 chr15 38243306 38243328 -63137193 - L1MB3 LINE L1 -266 5914 5894 318 271 84 0 chr15 38243342 38243449 -63137072 - L1MC4a LINE L1 -1892 5916 5801 203 156 0 0 chr15 38243516 38243548 -63136973 + (CA)n Simple_repeat Simple_repeat 2 33 0 2257 101 7 3 chr15 38243878 38244175 -63136346 + AluSx SINE Alu 1 298 -14 225 0 0 0 chr15 38244177 38244202 -63136319 + (CA)n Simple_repeat Simple_repeat 2 26 0 2197 97 43 7 chr15 38244260 38244560 -63135961 - AluSp SINE Alu -2 311 1 2327 96 0 10 chr15 38244837 38245149 -63135372 + AluSx SINE Alu 1 309 -3 1374 89 6 6 chr15 38245149 38245329 -63135192 + AluSq SINE Alu 120 299 -14 409 266 106 49 chr15 38246584 38246810 -63133711 + MIR SINE MIR 24 262 0 948 93 0 16 chr15 38246836 38246965 -63133556 - AluJb SINE Alu -185 127 1 216 86 0 0 chr15 38246973 38247008 -63133513 + (TTAG)n Simple_repeat Simple_repeat 2 36 0 2090 129 0 0 chr15 38247008 38247294 -63133227 - AluSx SINE Alu -26 286 1 2474 67 0 0 chr15 38247485 38247783 -63132738 + AluSc SINE Alu 5 302 -7 466 172 46 0 chr15 38248056 38248143 -63132378 - MER20 DNA MER1_type -3 216 126 1651 176 11 0 chr15 38248143 38248415 -63132106 + AluJb SINE Alu 1 275 -37 207 0 0 0 chr15 38248416 38248439 -63132082 + (TC)n Simple_repeat Simple_repeat 2 24 0 597 176 81 37 chr15 38248472 38248608 -63131913 - MER20 DNA MER1_type -75 144 3 251 323 103 62 chr15 38248648 38249452 -63131069 + L2 LINE L2 1126 1962 -1352 286 70 0 0 chr15 38249479 38249522 -63130999 - AluSc SINE Alu -3 296 254 288 103 0 0 chr15 38249544 38249583 -63130938 - AluSq SINE Alu -130 173 135 2256 85 6 29 chr15 38249583 38249899 -63130622 - AluSq SINE Alu -2 311 3 331 274 69 129 chr15 38250189 38250539 -63129982 + L2 LINE L2 2939 3267 -5 1487 104 125 57 chr15 38251476 38251517 -63129004 - THE1C LTR MaLR 0 375 338 2169 134 0 0 chr15 38251517 38251824 -63128697 + AluSx SINE Alu 1 307 -5 1487 104 125 57 chr15 38251824 38252062 -63128459 - THE1C LTR MaLR -37 338 77 1944 139 16 19 chr15 38252111 38252287 -63128234 - AluSg SINE Alu 0 310 134 2407 89 0 0 chr15 38252287 38252591 -63127930 - AluSx SINE Alu -8 304 1 1944 139 16 19 chr15 38252591 38252723 -63127798 - AluSg SINE Alu -176 134 3 6871 120 33 14 chr15 38252726 38253776 -63126745 - THE1C-int LTR MaLR -6 1574 505 2277 83 10 13 chr15 38254155 38254455 -63126066 - AluSp SINE Alu -14 299 1 1331 142 23 14 chr15 38254947 38255166 -63125355 + AluJb SINE Alu 1 221 -91 2328 115 0 3 chr15 38255461 38255773 -63124748 - AluSq SINE Alu -2 311 1 569 211 19 0 chr15 38256143 38256247 -63124274 + FLAM_A SINE Alu 1 106 -36 21 36 0 0 chr15 38256398 38256426 -63124095 + AT_rich Low_complexity Low_complexity 1 28 0 1699 175 6 38 chr15 38256481 38256795 -63123726 - AluJo SINE Alu -8 304 1 492 189 144 15 chr15 38256842 38256974 -63123547 - MIR SINE MIR -14 248 100 2523 56 10 0 chr15 38257103 38257406 -63123115 - AluY SINE Alu -4 307 2 640 174 43 17 chr15 38257487 38257602 -63122919 + FLAM_C SINE Alu 2 119 -24 216 0 0 0 chr15 38257603 38257627 -63122894 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 671 153 0 18 chr15 38258041 38258152 -63122369 - FLAM_A SINE Alu -14 128 20 2287 98 0 16 chr15 38258269 38258452 -63122069 - AluSx SINE Alu 0 312 135 2377 106 0 0 chr15 38258452 38258753 -63121768 - AluSx SINE Alu -11 301 1 2287 98 0 16 chr15 38258753 38258886 -63121635 - AluSx SINE Alu -177 135 1 1713 144 3 41 chr15 38259132 38259457 -63121064 + AluSx SINE Alu 2 315 0 502 318 103 29 chr15 38259667 38259909 -63120612 - MIR SINE MIR -1 261 2 1399 135 154 26 chr15 38260182 38260448 -63120073 - AluSg SINE Alu -10 300 1 209 130 43 0 chr15 38260586 38260632 -63119889 + T-rich Low_complexity Low_complexity 3 50 0 2346 101 7 0 chr15 38260641 38260939 -63119582 - AluSx SINE Alu -12 300 1 196 154 39 19 chr15 38260962 38261014 -63119507 + CT-rich Low_complexity Low_complexity 3 55 0 2282 106 0 6 chr15 38261017 38261328 -63119193 - AluSg SINE Alu -1 309 1 1475 196 38 14 chr15 38261330 38261621 -63118900 - AluJo SINE Alu -14 298 1 1855 165 3 0 chr15 38261904 38262201 -63118320 - AluJb SINE Alu -14 298 1 278 256 61 0 chr15 38262270 38262352 -63118169 + MIR SINE MIR 66 152 -110 505 120 0 27 chr15 38262918 38262991 -63117530 + Tigger2 DNA MER2_type 1 71 -2647 285 203 102 0 chr15 38262991 38263050 -63117471 - MER2 DNA MER2_type 0 345 281 1701 185 9 31 chr15 38263057 38263376 -63117145 + AluJb SINE Alu 1 312 0 395 222 25 0 chr15 38263378 38263459 -63117062 - MER8 DNA MER2_type -78 161 79 2404 91 0 0 chr15 38264524 38264821 -63115700 - AluSg SINE Alu -13 297 1 2173 131 0 0 chr15 38264870 38265168 -63115353 + AluSx SINE Alu 1 298 -14 1909 171 0 0 chr15 38265215 38265519 -63115002 - AluJb SINE Alu -8 304 1 207 265 265 0 chr15 38265684 38265767 -63114754 - L2 LINE L2 0 3313 3209 795 134 75 59 chr15 38265833 38266019 -63114502 - MER20 DNA MER1_type 0 219 31 2406 99 0 0 chr15 38267458 38267760 -63112761 - AluSg SINE Alu -8 302 1 780 157 15 22 chr15 38267799 38267933 -63112588 - FLAM_C SINE Alu 0 133 1 343 195 0 69 chr15 38268812 38268899 -63111622 - AluSq SINE Alu -131 172 92 2276 88 0 3 chr15 38268914 38269198 -63111323 - AluSq SINE Alu -30 283 1 216 0 0 0 chr15 38269198 38269222 -63111299 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1871 141 0 36 chr15 38269227 38269532 -63110989 - AluSx SINE Alu -18 294 1 2189 119 7 0 chr15 38269781 38270084 -63110437 - AluSx SINE Alu -7 305 1 853 204 25 0 chr15 38271250 38271412 -63109109 - FRAM SINE Alu 0 166 1 2379 86 0 3 chr15 38271422 38271712 -63108809 - AluSc SINE Alu -20 289 1 2280 104 0 0 chr15 38272015 38272303 -63108218 - AluSx SINE Alu -24 288 1 1753 164 0 7 chr15 38272805 38273092 -63107429 - AluJo SINE Alu -23 289 5 1840 149 58 0 chr15 38273507 38273802 -63106719 - AluJb SINE Alu 0 312 1 379 175 90 166 chr15 38273803 38273959 -63106562 + MER46C DNA MER2_type 22 188 -150 1662 149 0 88 chr15 38273959 38274129 -63106392 - AluJo SINE Alu -25 287 104 2406 107 0 0 chr15 38274129 38274438 -63106083 - AluSx SINE Alu -3 309 1 2085 147 7 0 chr15 38274445 38274751 -63105770 - AluSx SINE Alu -2 310 3 1662 149 0 88 chr15 38274751 38274880 -63105641 - AluJo SINE Alu -214 98 7 379 175 90 166 chr15 38274880 38274934 -63105587 + MER46C DNA MER2_type 188 216 -122 2459 86 3 0 chr15 38275129 38275432 -63105089 - AluSg SINE Alu -6 304 1 2669 49 0 0 chr15 38275570 38275877 -63104644 - AluY SINE Alu -4 307 1 23 68 0 0 chr15 38276305 38276349 -63104172 + AT_rich Low_complexity Low_complexity 1 44 0 195 42 0 0 chr15 38277800 38277824 -63102697 + (A)n Simple_repeat Simple_repeat 1 24 0 2212 110 7 3 chr15 38277926 38278225 -63102296 - AluSx SINE Alu -9 303 4 212 376 40 0 chr15 38278739 38278864 -63101657 - MIR SINE MIR -101 161 32 2249 99 0 3 chr15 38278873 38279199 -63101322 - AluSg SINE Alu 0 310 1 189 320 97 29 chr15 38279369 38279443 -63101078 + MER5A DNA MER1_type 70 154 -35 1871 136 55 33 chr15 38279443 38279773 -63100748 + MER1B DNA MER1_type 1 337 0 189 320 97 29 chr15 38279773 38279801 -63100720 + MER5A DNA MER1_type 154 179 -10 2594 47 0 3 chr15 38280169 38280468 -63100053 + AluY SINE Alu 1 298 -13 2361 100 0 0 chr15 38280535 38280845 -63099676 - AluSg SINE Alu 0 310 1 24 0 0 0 chr15 38281353 38281377 -63099144 + AT_rich Low_complexity Low_complexity 1 24 0 2317 94 0 7 chr15 38281922 38282221 -63098300 - AluSx SINE Alu -15 297 1 1297 149 0 5 chr15 38282471 38282666 -63097855 - AluJ SINE Alu -14 298 105 499 103 0 26 chr15 38282670 38282748 -63097773 + AluS SINE Alu 2 77 -236 806 142 0 0 chr15 38282748 38282868 -63097653 - AluJ SINE Alu -181 121 2 2418 101 0 0 chr15 38283662 38283969 -63096552 - AluSx SINE Alu -5 307 1 304 198 164 35 chr15 38283972 38284088 -63096433 + L1ME4a LINE L1 5990 6120 -1 1066 197 30 0 chr15 38284143 38284341 -63096180 - MER58A DNA MER1_type -19 205 2 635 217 87 60 chr15 38284350 38284534 -63095987 - MER5A DNA MER1_type 0 189 1 551 153 36 27 chr15 38285217 38285328 -63095193 - FRAM SINE Alu -22 154 43 1823 163 41 7 chr15 38285561 38285855 -63094666 + AluJo SINE Alu 1 304 -8 420 195 24 0 chr15 38286195 38286277 -63094244 - HsTC2 DNA Tc2 -1812 86 3 2232 100 17 0 chr15 38287169 38287468 -63093053 - AluSg SINE Alu -6 304 1 1277 107 25 10 chr15 38288827 38289023 -63091498 - Tigger1 DNA MER2_type 0 2418 2220 1166 123 25 0 chr15 38289028 38289191 -63091330 + AluSx SINE Alu 1 167 -145 2340 104 0 0 chr15 38289205 38289513 -63091008 - AluSg SINE Alu -2 308 1 5798 108 56 21 chr15 38289513 38290429 -63090092 - Tigger1 DNA MER2_type -726 1692 745 753 96 39 0 chr15 38290427 38290531 -63089990 - Tigger1 DNA MER2_type -1787 631 524 * 1747 102 120 11 chr15 38290532 38290798 -63089723 - AluSg1 SINE Alu -14 295 1 899 151 84 0 chr15 38290801 38290967 -63089554 - Tigger1 DNA MER2_type -1961 457 278 1158 172 20 5 chr15 38290968 38291166 -63089355 + AluJb SINE Alu 88 288 -24 1341 150 146 0 chr15 38291166 38291419 -63089102 - Tigger1 DNA MER2_type -2127 291 2 280 214 107 29 chr15 38291419 38291522 -63088999 + MIR SINE MIR 152 262 0 342 255 49 29 chr15 38291830 38291932 -63088589 + MIR SINE MIR 7 110 -152 638 112 0 0 chr15 38292203 38292292 -63088229 + FLAM_A SINE Alu 22 110 -32 201 39 0 0 chr15 38292293 38292319 -63088202 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 336 48 0 0 chr15 38292318 38292360 -63088161 + (CA)n Simple_repeat Simple_repeat 1 42 0 5111 126 46 29 chr15 38292360 38293272 -63087249 + L1MA4A LINE L1 5369 6296 -7 548 43 0 0 chr15 38293437 38293506 -63087015 - MER41A LTR ERV1 -86 468 400 596 220 15 8 chr15 38293508 38293640 -63086881 - FLAM_A SINE Alu 0 133 1 426 277 214 10 chr15 38293744 38293950 -63086571 - MIR SINE MIR -13 249 2 1677 168 18 11 chr15 38293987 38294273 -63086248 + AluJo SINE Alu 1 288 -24 2092 136 3 0 chr15 38294281 38294583 -63085938 + AluSx SINE Alu 1 303 -9 693 183 48 0 chr15 38294594 38294720 -63085801 + FLAM_C SINE Alu 2 133 0 2236 104 7 3 chr15 38294997 38295295 -63085226 + AluSx SINE Alu 1 299 -13 780 219 166 33 chr15 38295321 38295622 -63084899 - MER2 DNA MER2_type 0 344 4 2334 80 3 17 chr15 38295830 38296132 -63084389 + AluSx SINE Alu 1 298 -14 1746 171 25 0 chr15 38296306 38296586 -63083935 + AluSx SINE Alu 1 287 -25 2579 50 0 0 chr15 38296906 38297204 -63083317 - AluY SINE Alu -13 298 1 2167 98 28 0 chr15 38297204 38297491 -63083030 - AluSg SINE Alu -15 295 1 2238 114 0 3 chr15 38298014 38298313 -63082208 - AluSg SINE Alu -12 298 1 2202 119 0 10 chr15 38298343 38298645 -63081876 - AluSx SINE Alu -13 299 1 1205 163 202 0 chr15 38299425 38299677 -63080844 + AluJo SINE Alu 1 303 -9 1617 156 33 11 chr15 38299685 38299960 -63080561 + AluJb SINE Alu 1 281 -31 243 0 0 0 chr15 38299960 38299987 -63080534 + (CA)n Simple_repeat Simple_repeat 1 27 0 189 333 0 38 chr15 38300533 38300638 -63079883 + L2 LINE L2 1806 1906 -1408 584 203 101 0 chr15 38300651 38300799 -63079722 - L1ME4a LINE L1 -4 6117 5955 598 208 15 15 chr15 38301342 38301472 -63079049 + MER5A DNA MER1_type 60 189 0 2241 70 0 11 chr15 38304579 38304894 -63075627 - AluY SINE Alu 0 312 1 216 0 0 0 chr15 38304911 38304935 -63075586 + (A)n Simple_repeat Simple_repeat 1 24 0 894 149 11 96 chr15 38305260 38305448 -63075073 + AluJb SINE Alu 133 304 -8 183 300 82 27 chr15 38305477 38305587 -63074934 - MIR3 SINE MIR -7 201 86 226 274 0 0 chr15 38305722 38305773 -63074748 - LTR69 LTR ERVL -4 584 534 2403 81 3 0 chr15 38305816 38306111 -63074410 - AluY SINE Alu -15 296 1 1805 138 29 0 chr15 38306128 38306404 -63074117 - AluSx SINE Alu 0 312 29 228 100 0 0 chr15 38306516 38306546 -63073975 + Alu SINE Alu 14 43 -260 374 74 0 0 chr15 38306816 38306870 -63073651 - AluSc SINE Alu 0 299 246 395 268 24 31 chr15 38307146 38307273 -63073248 + AluSg/x SINE Alu 175 300 0 2027 113 0 42 chr15 38307275 38307584 -63072937 + AluSx SINE Alu 3 298 -14 856 209 50 0 chr15 38307586 38307768 -63072753 + MER58B DNA MER1_type 147 337 -4 1767 151 0 45 chr15 38308108 38308247 -63072274 + AluJo SINE Alu 6 127 -185 2381 72 7 0 chr15 38308247 38308538 -63071983 + AluSc SINE Alu 1 293 -16 1767 151 0 45 chr15 38308538 38308689 -63071832 + AluJo SINE Alu 127 283 -29 2066 139 3 0 chr15 38308743 38309037 -63071484 + AluSx SINE Alu 1 295 -17 657 204 156 0 chr15 38309077 38309244 -63071277 + L1MB4 LINE L1 5988 6180 0 187 265 88 0 chr15 38309544 38309612 -63070909 - MIR SINE MIR -121 141 68 296 189 0 0 chr15 38309928 38309981 -63070540 + Alu SINE Alu 1 53 -249 2290 75 7 0 chr15 38310270 38310549 -63069972 + AluSp SINE Alu 21 301 -12 2397 105 0 3 chr15 38311211 38311524 -63068997 + AluSx SINE Alu 1 312 0 2013 122 17 3 chr15 38311885 38312172 -63068349 - AluSx SINE Alu -21 291 1 529 261 37 22 chr15 38312172 38312306 -63068215 - MER58B DNA MER1_type -205 136 1 1524 121 0 130 chr15 38312331 38312654 -63067867 + AluSq SINE Alu 1 281 -32 2254 75 0 7 chr15 38312654 38312931 -63067590 + AluY SINE Alu 10 285 -26 411 98 81 40 chr15 38312931 38313104 -63067417 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chr15 38313595 38313616 -63066905 + AT_rich Low_complexity Low_complexity 1 21 0 2141 79 0 25 chr15 38314049 38314327 -63066194 - AluY SINE Alu -40 271 1 1896 162 0 3 chr15 38314376 38314672 -63065849 + AluJo SINE Alu 1 295 -17 210 244 0 0 chr15 38314748 38314793 -63065728 + (TAG)n Simple_repeat Simple_repeat 1 45 0 884 163 59 0 chr15 38314838 38314991 -63065530 - AluJb SINE Alu -14 298 137 1390 193 36 103 chr15 38315314 38315419 -63065102 + L1MC4 LINE L1 7554 7664 -378 573 226 40 16 chr15 38315419 38315543 -63064978 - FLAM_A SINE Alu -6 127 1 1390 193 36 103 chr15 38315543 38315578 -63064943 + L1MC4 LINE L1 7664 7700 -342 1773 151 21 11 chr15 38315578 38315862 -63064659 + AluJb SINE Alu 1 287 -25 1390 193 36 103 chr15 38315862 38316244 -63064277 + L1MC4 LINE L1 7700 8042 0 1142 188 118 30 chr15 38316323 38316594 -63063927 - AluJo SINE Alu -6 296 2 223 321 26 62 chr15 38317454 38317651 -63062870 + MIR3 SINE MIR 2 189 -57 860 151 145 38 chr15 38317681 38317867 -63062654 + AluJb SINE Alu 84 289 -23 2042 125 10 7 chr15 38318017 38318314 -63062207 + AluSx SINE Alu 1 298 -14 2041 154 0 13 chr15 38318530 38318835 -63061686 + AluSx SINE Alu 1 301 -11 2292 111 10 0 chr15 38318838 38319144 -63061377 + AluSc SINE Alu 1 309 0 2222 115 6 16 chr15 38319818 38320130 -63060391 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr15 38320166 38320188 -63060333 + AT_rich Low_complexity Low_complexity 1 22 0 800 170 0 22 chr15 38320487 38320622 -63059899 - FLAM_C SINE Alu 0 133 2 2279 100 0 3 chr15 38320665 38320965 -63059556 - AluSq SINE Alu -8 305 7 186 320 26 26 chr15 38321144 38321222 -63059299 - L2 LINE L2 -494 2820 2743 405 0 0 0 chr15 38321222 38321267 -63059254 + (TG)n Simple_repeat Simple_repeat 2 46 0 392 242 180 31 chr15 38321380 38321508 -63059013 + MER5A DNA MER1_type 34 180 -9 2255 105 0 3 chr15 38321755 38322049 -63058472 + AluSc SINE Alu 1 293 -16 268 340 58 0 chr15 38322125 38322281 -63058240 - L2 LINE L2 -974 2340 2176 1936 156 0 3 chr15 38322957 38323246 -63057275 + AluJb SINE Alu 6 293 -19 2351 86 0 17 chr15 38323256 38323391 -63057130 + AluSg SINE Alu 1 137 -173 2150 123 0 16 chr15 38323391 38323701 -63056820 + AluSx SINE Alu 1 305 -7 2351 86 0 17 chr15 38323701 38323866 -63056655 + AluSg SINE Alu 137 296 -14 2897 153 66 21 chr15 38323942 38324045 -63056476 + MER68 LTR ERV1 1 98 -464 1386 214 127 11 chr15 38324045 38324400 -63056121 - MSTD LTR MaLR 0 396 1 2897 153 66 21 chr15 38324400 38324826 -63055695 + MER68 LTR ERV1 98 554 -8 2035 144 0 22 chr15 38325122 38325441 -63055080 - AluJb SINE Alu 0 312 1 1613 172 40 7 chr15 38326070 38326372 -63054149 - AluJo SINE Alu 0 312 1 766 125 211 47 chr15 38326784 38326821 -63053700 + Tigger2 DNA MER2_type 6 36 -2682 2321 99 7 0 chr15 38326821 38327114 -63053407 - AluSc SINE Alu -14 295 1 766 125 211 47 chr15 38327114 38327178 -63053343 + Tigger2 DNA MER2_type 36 88 -2630 2247 105 10 0 chr15 38327178 38327483 -63053038 + AluSp SINE Alu 1 308 -5 766 125 211 47 chr15 38327483 38327657 -63052864 + Tigger2 DNA MER2_type 88 365 -2353 2872 133 79 6 chr15 38328519 38328999 -63051522 + Tigger2 DNA MER2_type 350 864 -1854 21 0 0 0 chr15 38329001 38329022 -63051499 + AT_rich Low_complexity Low_complexity 1 21 0 307 83 0 21 chr15 38329209 38329257 -63051264 - Alu SINE Alu -260 48 2 4195 93 30 71 chr15 38329261 38329298 -63051223 + Tigger2 DNA MER2_type 851 888 -1830 2201 113 0 0 chr15 38329298 38329632 -63050889 + AluSx SINE Alu 1 334 0 4195 93 30 71 chr15 38329632 38329686 -63050835 + Tigger2 DNA MER2_type 888 943 -1775 2338 102 3 6 chr15 38329686 38329999 -63050522 + AluSx SINE Alu 1 312 0 4195 93 30 71 chr15 38329999 38330595 -63049926 + Tigger2 DNA MER2_type 943 1512 -1206 2176 114 10 0 chr15 38330595 38330894 -63049627 - AluSx SINE Alu -10 302 1 2547 62 0 0 chr15 38333094 38333401 -63047120 - AluY SINE Alu -4 307 1 2282 98 30 0 chr15 38334055 38334350 -63046171 - AluSx SINE Alu -8 304 1 195 204 0 0 chr15 38335510 38335559 -63044962 + GA-rich Low_complexity Low_complexity 4 52 0 2056 91 11 21 chr15 38336486 38336773 -63043748 + AluSg SINE Alu 6 289 -21 1410 199 62 21 chr15 38337816 38338107 -63042414 + AluJo SINE Alu 1 303 -9 819 221 0 12 chr15 38338643 38338806 -63041715 - FRAM SINE Alu -5 161 1 492 292 28 48 chr15 38338841 38339091 -63041430 + MIR SINE MIR 15 259 -3 2064 123 57 29 chr15 38340817 38341167 -63039354 + MER46B DNA MER2_type 2 236 0 1704 181 0 4 chr15 38342827 38343103 -63037418 - AluJb SINE Alu -37 275 1 30 27 0 0 chr15 38343226 38343263 -63037258 + AT_rich Low_complexity Low_complexity 1 37 0 2218 103 7 10 chr15 38343510 38343811 -63036710 - AluSp SINE Alu -11 302 3 246 32 0 0 chr15 38344157 38344188 -63036333 + (TG)n Simple_repeat Simple_repeat 2 32 0 2089 117 12 55 chr15 38344737 38345063 -63035458 - AluSx SINE Alu 0 312 1 879 165 0 0 chr15 38345173 38345300 -63035221 - FLAM_C SINE Alu -16 127 1 1136 204 113 6 chr15 38345300 38345556 -63034965 - L1ME1 LINE L1 -33 6133 5855 2290 101 7 0 chr15 38345556 38345853 -63034668 - AluSq SINE Alu -14 299 1 1136 204 113 6 chr15 38345853 38345882 -63034639 - L1ME1 LINE L1 -311 5855 5831 2087 143 0 19 chr15 38345898 38346212 -63034309 - AluJo SINE Alu -4 308 1 2108 193 42 0 chr15 38346523 38346932 -63033589 - MSTB LTR MaLR 0 426 1 983 130 34 45 chr15 38346996 38347155 -63033366 - MER20 DNA MER1_type 0 219 61 2275 111 0 0 chr15 38347155 38347453 -63033068 + AluSx SINE Alu 1 298 -14 983 130 34 45 chr15 38347453 38347470 -63033051 - MER20 DNA MER1_type -158 61 45 188 229 260 21 chr15 38347473 38347569 -63032952 - MIR3 SINE MIR -48 160 42 355 302 188 10 chr15 38347778 38347980 -63032541 - MIR SINE MIR -13 249 12 436 269 86 11 chr15 38348037 38348223 -63032298 - MIR SINE MIR -55 207 8 2357 100 3 0 chr15 38348384 38348693 -63031828 - AluSx SINE Alu -2 310 1 596 273 87 0 chr15 38348836 38349019 -63031502 + MIR SINE MIR 31 229 -33 2568 55 0 16 chr15 38349601 38349910 -63030611 - AluY SINE Alu 0 311 8 232 185 19 0 chr15 38350010 38350064 -63030457 + GA-rich Low_complexity Low_complexity 1 55 0 300 316 59 0 chr15 38351219 38351355 -63029166 - MIR SINE MIR -114 148 5 1149 208 168 0 chr15 38353051 38353301 -63027220 - AluJb SINE Alu -8 294 3 2159 111 3 10 chr15 38353321 38353484 -63027037 - AluSx SINE Alu -16 296 134 2165 119 3 3 chr15 38353484 38353786 -63026735 - AluSx SINE Alu -10 302 1 2159 111 3 10 chr15 38353786 38353920 -63026601 - AluSx SINE Alu -178 134 1 594 63 0 0 chr15 38353920 38353999 -63026522 + (TG)n Simple_repeat Simple_repeat 2 80 0 2439 64 0 0 chr15 38353999 38354282 -63026239 - AluY SINE Alu -28 283 1 317 327 60 52 chr15 38354289 38354540 -63025981 - L1M4 LINE L1 -988 5158 4906 1161 146 110 0 chr15 38354546 38354765 -63025756 - L1MA4 LINE L1 -5 6295 6053 2159 124 13 0 chr15 38354863 38355170 -63025351 - AluSx SINE Alu 0 312 2 197 330 58 58 chr15 38355314 38355502 -63025019 + L2 LINE L2 2858 3045 -227 224 315 153 0 chr15 38355687 38355798 -63024723 - L2 LINE L2 0 3272 3145 264 159 143 0 chr15 38356352 38356415 -63024106 - L2 LINE L2 0 3272 3201 2396 98 3 0 chr15 38356466 38356771 -63023750 - AluSp SINE Alu -2 311 6 5693 71 18 16 chr15 38356814 38357589 -63022932 - SVA Other Other 0 1386 610 1946 136 27 7 chr15 38357794 38358095 -63022426 - AluSx SINE Alu -5 307 1 2577 179 91 62 chr15 38358325 38358933 -63021588 - MER51A LTR ERV1 -9 625 1 303 122 0 0 chr15 38359118 38359182 -63021339 - AluSg SINE Alu 0 305 242 1192 145 28 0 chr15 38359182 38359361 -63021160 - AluSg SINE Alu -121 189 6 2511 172 41 120 chr15 38359433 38360183 -63020338 - LTR8 LTR ERV1 0 691 1 279 340 90 13 chr15 38360306 38360462 -63020059 - L2 LINE L2 -1 3271 3104 2202 124 3 16 chr15 38360578 38360893 -63019628 - AluJo SINE Alu -1 311 1 278 274 186 0 chr15 38362046 38362170 -63018351 - MIR SINE MIR -6 256 110 1885 157 0 20 chr15 38362406 38362712 -63017809 - AluJb SINE Alu -12 300 1 987 127 0 0 chr15 38362918 38363052 -63017469 - FRAM SINE Alu -32 144 11 2399 107 0 0 chr15 38363146 38363454 -63017067 - AluSx SINE Alu 0 312 5 384 59 0 0 chr15 38363591 38363642 -63016879 + (CA)n Simple_repeat Simple_repeat 2 52 0 2293 105 3 0 chr15 38365399 38365693 -63014828 - AluSg SINE Alu -15 295 1 2115 142 0 0 chr15 38365766 38366075 -63014446 + AluSx SINE Alu 1 309 -3 801 259 119 16 chr15 38366136 38366493 -63014028 + MLT1I LTR MaLR 1 501 -10 2423 91 7 0 chr15 38366493 38366802 -63013719 - AluSq SINE Alu -2 311 1 1088 226 5 9 chr15 38367079 38367296 -63013225 + MER58A DNA MER1_type 1 216 -8 1851 141 0 31 chr15 38367915 38368233 -63012288 - AluJo SINE Alu 0 309 1 2086 136 7 0 chr15 38368658 38368966 -63011555 + AluSx SINE Alu 1 310 -2 632 241 77 0 chr15 38369421 38369591 -63010930 + MIR SINE MIR 59 241 -21 2164 133 0 0 chr15 38369638 38369939 -63010582 + AluSx SINE Alu 1 301 -11 2170 107 17 0 chr15 38369986 38370275 -63010246 + AluSg SINE Alu 1 294 -16 556 299 67 42 chr15 38370279 38370640 -63009881 + L1MC/D LINE L1 5273 5623 -683 2355 90 0 0 chr15 38370640 38370939 -63009582 + AluSg SINE Alu 1 299 -11 556 299 67 42 chr15 38370939 38370969 -63009552 + L1MC/D LINE L1 5623 5651 -655 1917 136 17 7 chr15 38370969 38371264 -63009257 - AluSx SINE Alu -14 298 1 556 299 67 42 chr15 38371264 38371383 -63009138 + L1MC/D LINE L1 5651 5809 -497 23 36 0 54 chr15 38371440 38371496 -63009025 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr15 38371532 38371553 -63008968 + AT_rich Low_complexity Low_complexity 1 21 0 277 191 26 104 chr15 38372526 38372565 -63007956 + MIR SINE MIR 111 151 -111 2489 87 0 0 chr15 38372565 38372876 -63007645 + AluY SINE Alu 1 311 0 277 191 26 104 chr15 38372876 38372951 -63007570 + MIR SINE MIR 151 216 -46 186 322 17 0 chr15 38373091 38373150 -63007371 + L2 LINE L2 3252 3311 -2 988 117 0 0 chr15 38373321 38373458 -63007063 - AluSp/q SINE Alu -16 297 161 1712 185 3 19 chr15 38373701 38374014 -63006507 - AluJb SINE Alu -4 308 1 1975 130 7 0 chr15 38374111 38374388 -63006133 - AluJo SINE Alu -33 279 1 306 304 37 92 chr15 38374395 38374549 -63005972 - L1M4 LINE L1 -2700 3446 3285 1894 108 104 0 chr15 38374549 38374827 -63005694 - AluSc SINE Alu -2 307 1 306 304 37 92 chr15 38374827 38375021 -63005500 - L1M4 LINE L1 -2861 3285 3117 919 216 46 27 chr15 38375057 38375323 -63005198 - L1ME1 LINE L1 -18 6148 5881 1140 139 80 15 chr15 38375323 38375524 -63004997 + AluJo SINE Alu 86 299 -13 1204 146 9 82 chr15 38375524 38375744 -63004777 - Charlie3 DNA MER1_type -2455 255 52 958 95 51 0 chr15 38376110 38376247 -63004274 - LTR23 LTR ERV1 -1 436 293 1293 132 6 0 chr15 38376266 38376448 -63004073 + AluJb SINE Alu 112 294 -18 1379 183 202 79 chr15 38376451 38376684 -63003837 - L1MC4 LINE L1 -265 7777 7574 2045 114 4 0 chr15 38376684 38377002 -63003519 - AluSx SINE Alu 0 327 9 1379 183 202 79 chr15 38377002 38377247 -63003274 - L1MC4 LINE L1 -468 7574 7238 258 175 50 12 chr15 38377272 38377352 -63003169 - L1MC4 LINE L1 -959 7083 7001 2251 169 23 8 chr15 38377353 38377743 -63002778 - MER57A LTR ERV1 0 403 8 910 219 131 25 chr15 38377762 38377999 -63002522 - L1MC4 LINE L1 -1228 6814 6553 823 193 62 0 chr15 38378089 38378250 -63002271 + FRAM SINE Alu 1 171 -5 252 59 0 0 chr15 38378291 38378325 -63002196 + (TC)n Simple_repeat Simple_repeat 2 35 0 814 219 12 0 chr15 38378326 38378486 -63002035 - FRAM SINE Alu -4 162 1 2397 92 0 0 chr15 38378926 38379220 -63001301 + AluSp SINE Alu 1 294 -19 26 64 0 0 chr15 38380208 38380255 -63000266 + AT_rich Low_complexity Low_complexity 1 47 0 230 161 32 97 chr15 38380391 38380484 -63000037 + L1ME4a LINE L1 5943 6029 -92 2101 127 0 0 chr15 38380499 38380791 -62999730 - AluSx SINE Alu -5 307 16 2092 138 7 0 chr15 38380994 38381284 -62999237 - AluSx SINE Alu -20 292 1 2282 102 3 0 chr15 38381293 38381587 -62998934 - AluSx SINE Alu -17 295 1 189 147 0 0 chr15 38381591 38381625 -62998896 + (T)n Simple_repeat Simple_repeat 1 34 0 2189 116 0 7 chr15 38381882 38382185 -62998336 - AluSx SINE Alu -10 302 2 1044 152 0 0 chr15 38382212 38382457 -62998064 + CT-rich Low_complexity Low_complexity 1 245 0 2175 92 3 54 chr15 38382457 38382774 -62997747 - AluSq SINE Alu -12 301 1 712 169 0 29 chr15 38382815 38382951 -62997570 - AluJb SINE Alu -18 294 163 331 188 0 0 chr15 38382953 38383011 -62997510 - Alu SINE Alu -257 51 1 1751 158 0 4 chr15 38383014 38383274 -62997247 + AluJb SINE Alu 40 298 -14 6994 197 54 64 chr15 38383274 38384984 -62995537 - L1MA3 LINE L1 -10 7714 5989 1582 205 7 3 chr15 38384984 38385281 -62995240 - AluJb SINE Alu -14 298 1 6994 197 54 64 chr15 38385281 38385954 -62994567 - L1MA3 LINE L1 -1735 5989 5311 2241 122 0 6 chr15 38385954 38386265 -62994256 - AluSc SINE Alu 0 309 1 6994 197 54 64 chr15 38386265 38387012 -62993509 - L1MA3 LINE L1 -2413 5311 4558 682 138 0 0 chr15 38387012 38387106 -62993415 - AluJ/FLAM SINE Alu -217 95 2 6994 197 54 64 chr15 38387106 38387263 -62993258 - L1MA3 LINE L1 -3166 4558 4401 1755 179 10 0 chr15 38387263 38387559 -62992962 + AluSx SINE Alu 1 299 -13 6994 197 54 64 chr15 38387559 38388676 -62991845 - L1MA3 LINE L1 -3323 4401 3270 878 193 0 0 chr15 38388677 38388822 -62991699 + FRAM SINE Alu 20 164 -12 1828 162 7 10 chr15 38388823 38389125 -62991396 + AluJb SINE Alu 1 301 -11 427 258 24 0 chr15 38389166 38389290 -62991231 - MIR SINE MIR -57 205 79 2254 110 3 3 chr15 38389597 38389906 -62990615 - AluSx SINE Alu -3 309 1 224 264 14 42 chr15 38390577 38390649 -62989872 + L2 LINE L2 3244 3313 0 21 57 0 0 chr15 38390724 38390759 -62989762 + AT_rich Low_complexity Low_complexity 1 35 0 955 139 73 0 chr15 38391087 38391238 -62989283 + AluSp SINE Alu 137 298 -15 2373 77 0 0 chr15 38391305 38391591 -62988930 - AluY SINE Alu -25 286 1 1699 171 3 21 chr15 38391977 38392263 -62988258 + AluJb SINE Alu 2 282 -30 2165 125 0 0 chr15 38392263 38392560 -62987961 + AluSg SINE Alu 1 297 -13 2308 112 6 6 chr15 38392746 38393059 -62987462 + AluSq SINE Alu 1 313 0 1980 153 0 7 chr15 38393170 38393478 -62987043 - AluSx SINE Alu -6 306 1 764 117 0 0 chr15 38394387 38394490 -62986031 + AluSg/x SINE Alu 198 300 -9 234 375 31 16 chr15 38394490 38394618 -62985903 - MIR SINE MIR -63 145 16 866 304 119 32 chr15 38394844 38395281 -62985240 - L2 LINE L2 -4 3309 2835 2077 135 0 7 chr15 38395545 38395842 -62984679 + AluSx SINE Alu 3 297 -15 1674 199 17 0 chr15 38395879 38396181 -62984340 - AluJo SINE Alu -5 307 1 2339 80 7 7 chr15 38396503 38396805 -62983716 + AluSc SINE Alu 1 302 -7 257 269 92 50 chr15 38396838 38396957 -62983564 - MIR3 SINE MIR -31 177 54 1712 59 31 9 chr15 38397329 38397551 -62982970 - L1PA5 LINE L1 0 6154 5928 2424 81 7 3 chr15 38397559 38397869 -62982652 - AluSp SINE Alu -2 311 1 214 267 168 20 chr15 38398125 38398226 -62982295 - L2 LINE L2 -8 3305 3190 410 240 133 33 chr15 38398577 38398727 -62981794 - L1MCa LINE L1 -1985 4441 4277 247 29 114 0 chr15 38398727 38398762 -62981759 - MER5C DNA MER1_type -4 320 282 1246 173 0 23 chr15 38398771 38398985 -62981536 - AluJo SINE Alu -19 293 85 577 155 130 6 chr15 38398985 38399146 -62981375 - MER5C DNA MER1_type -26 298 118 2251 120 3 0 chr15 38399153 38399461 -62981060 - AluSx SINE Alu -3 309 1 1509 108 38 46 chr15 38399480 38399720 -62980801 - AluSg SINE Alu -31 279 42 921 243 23 0 chr15 38399722 38399981 -62980540 - L1MCa LINE L1 -3113 3313 3049 7915 123 46 26 chr15 38399999 38400177 -62980344 - Tigger1 DNA MER2_type 0 2418 2245 2424 75 0 0 chr15 38400177 38400471 -62980050 + AluY SINE Alu 1 294 -17 7915 123 46 26 chr15 38400471 38401529 -62978992 - Tigger1 DNA MER2_type -173 2245 1154 1608 133 90 18 chr15 38401529 38401807 -62978714 - AluJb SINE Alu -14 298 1 7915 123 46 26 chr15 38401807 38401850 -62978671 - Tigger1 DNA MER2_type -1264 1154 1113 415 115 16 16 chr15 38401850 38401911 -62978610 + AluS SINE Alu 8 68 -250 1336 132 66 31 chr15 38403747 38403975 -62976546 - MER46A DNA MER2_type 0 236 1 280 301 12 0 chr15 38404527 38404610 -62975911 + L2 LINE L2 3186 3269 -3 828 194 157 8 chr15 38405226 38405474 -62975047 - MER33 DNA MER1_type -32 292 8 2355 141 21 24 chr15 38405708 38406084 -62974437 + THE1C LTR MaLR 1 375 0 11764 97 12 28 chr15 38406084 38407689 -62972832 + THE1C-int LTR MaLR 1 1580 0 2278 128 27 29 chr15 38407689 38408065 -62972456 + THE1C LTR MaLR 1 375 0 361 146 10 126 chr15 38408386 38408489 -62972032 - L1MB7 LINE L1 -19 6165 6075 2150 123 27 0 chr15 38408969 38409269 -62971252 + AluJb SINE Alu 5 312 0 5509 195 125 110 chr15 38409401 38410876 -62969645 - L1MCa LINE L1 -3976 2450 925 2832 7 0 0 chr15 38410876 38411179 -62969342 + AluYa5 SINE Alu 1 303 -8 5509 195 125 110 chr15 38411179 38412103 -62968418 - L1MCa LINE L1 -5501 925 16 2864 135 49 5 chr15 38412192 38412600 -62967921 - MSTB LTR MaLR 0 426 1 8413 174 90 11 chr15 38412600 38414130 -62966391 - MSTB-int LTR MaLR 0 1651 1 375 135 0 0 chr15 38414130 38414178 -62966343 - MSTB LTR MaLR 0 426 379 1379 150 191 24 chr15 38414178 38414472 -62966049 + MSTA LTR MaLR 1 343 -85 2248 145 38 11 chr15 38414481 38414853 -62965668 - MSTB LTR MaLR -44 382 1 319 115 58 0 chr15 38415680 38415732 -62964789 + MLT1C LTR MaLR 380 434 -33 715 196 119 26 chr15 38416048 38416242 -62964279 + L1MA9 LINE L1 6069 6280 -32 25 0 0 0 chr15 38416242 38416267 -62964254 + AT_rich Low_complexity Low_complexity 1 25 0 2132 45 4 0 chr15 38416500 38416747 -62963774 + L1PA4 LINE L1 5908 6155 0 683 46 0 23 chr15 38417479 38417566 -62962955 - L1PA8A LINE L1 -29 6102 6018 188 340 187 10 chr15 38419078 38419287 -62961234 + L2 LINE L2 2836 3081 -191 221 302 0 0 chr15 38419451 38419504 -62961017 + L2 LINE L2 3247 3299 -14 2085 107 4 0 chr15 38420114 38420419 -62960102 + AluSx SINE Alu 1 306 0 295 252 0 137 chr15 38420441 38420463 -62960058 + MIR SINE MIR 40 63 -145 422 251 11 99 chr15 38420463 38420654 -62959867 + MER5B DNA MER1_type 1 174 -4 295 252 0 137 chr15 38420654 38420762 -62959759 + MIR SINE MIR 63 152 -56 893 254 45 35 chr15 38421980 38422239 -62958282 + L1ME LINE L1 683 949 -5121 7947 173 151 39 chr15 38422239 38423817 -62956704 + MER52A LTR ERV1 1 1755 0 893 254 45 35 chr15 38423817 38423959 -62956562 + L1ME LINE L1 949 1088 -4982 2138 125 3 3 chr15 38424006 38424311 -62956210 + AluSq SINE Alu 1 305 -8 198 0 0 0 chr15 38424647 38424669 -62955852 + (A)n Simple_repeat Simple_repeat 1 22 0 2033 260 106 30 chr15 38424694 38425705 -62954816 + L1ME LINE L1 1183 2270 -3991 22 0 0 0 chr15 38426136 38426158 -62954363 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr15 38426409 38426441 -62954080 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr15 38427394 38427425 -62953096 + AT_rich Low_complexity Low_complexity 1 31 0 2390 80 0 10 chr15 38427943 38428257 -62952264 - AluY SINE Alu 0 311 1 29 0 0 0 chr15 38431381 38431410 -62949111 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 38433675 38433697 -62946824 + AT_rich Low_complexity Low_complexity 1 22 0 300 242 242 0 chr15 38433788 38433879 -62946642 + MIR SINE MIR 65 177 -85 1861 154 7 20 chr15 38434366 38434671 -62945850 - AluJb SINE Alu -11 301 1 1753 96 74 33 chr15 38434800 38435070 -62945451 - MER1B DNA MER1_type 0 339 59 2164 115 3 3 chr15 38435581 38435876 -62944645 + AluSx SINE Alu 5 299 -13 1171 159 48 5 chr15 38435926 38436115 -62944406 - AluJb SINE Alu -115 197 1 187 336 100 18 chr15 38436494 38436604 -62943917 - MIR SINE MIR -26 236 118 9870 126 105 99 chr15 38436649 38437323 -62943198 + L1M4c LINE L1 18 686 -5698 1182 151 0 11 chr15 38437323 38437509 -62943012 + AluJo SINE Alu 120 303 -9 9870 126 105 99 chr15 38437509 38438797 -62941724 + L1M4c LINE L1 686 2178 -4206 657 71 0 61 chr15 38438797 38438857 -62941664 + L1MB3 LINE L1 6084 6137 -46 1900 140 0 23 chr15 38438857 38439165 -62941356 + AluSx SINE Alu 1 301 -11 657 71 0 61 chr15 38439165 38439202 -62941319 + L1MB3 LINE L1 6137 6175 -8 1153 311 80 9 chr15 38440853 38441316 -62939205 + LTR33 LTR ERVL 18 513 -8 1848 157 17 3 chr15 38441483 38441783 -62938738 - AluJb SINE Alu -8 304 1 843 163 0 7 chr15 38441787 38441946 -62938575 - AluSg/x SINE Alu 0 311 154 288 234 0 0 chr15 38442313 38442390 -62938131 + T-rich Low_complexity Low_complexity 1 77 0 34 0 0 0 chr15 38442793 38442827 -62937694 + AT_rich Low_complexity Low_complexity 1 34 0 1992 138 3 0 chr15 38442827 38443123 -62937398 - AluSq SINE Alu -16 297 1 2045 117 41 3 chr15 38446108 38446399 -62934122 - AluSx SINE Alu -10 302 1 1852 162 3 13 chr15 38447360 38447669 -62932852 + AluJb SINE Alu 1 306 -6 728 216 0 0 chr15 38447722 38447847 -62932674 + FLAM_C SINE Alu 2 126 -7 1407 220 0 14 chr15 38447853 38448139 -62932382 + AluJo SINE Alu 1 282 -30 2321 61 17 14 chr15 38448139 38448432 -62932089 + AluY SINE Alu 1 294 -17 12870 121 37 34 chr15 38448432 38449490 -62931031 - Tigger1 DNA MER2_type -170 2248 1194 1623 133 90 18 chr15 38449490 38449768 -62930753 - AluJb SINE Alu -14 298 1 12870 121 37 34 chr15 38449768 38449814 -62930707 - Tigger1 DNA MER2_type -1224 1194 1150 2214 91 0 4 chr15 38449814 38450090 -62930431 + AluSq SINE Alu 11 285 -28 12870 121 37 34 chr15 38450090 38451057 -62929464 - Tigger1 DNA MER2_type -1268 1150 171 1291 278 50 24 chr15 38451067 38451876 -62928645 - L1MEc LINE L1 -3398 3028 2234 2216 127 0 0 chr15 38452090 38452389 -62928132 - AluSx SINE Alu -13 299 1 310 265 72 0 chr15 38452393 38452528 -62927993 - L1M2 LINE L1 -4338 2089 1538 226 106 197 61 chr15 38452610 38452676 -62927845 - L1MEc LINE L1 -4871 1334 1260 707 167 0 9 chr15 38452835 38452949 -62927572 - FLAM_A SINE Alu -16 126 14 462 222 73 52 chr15 38452950 38452961 -62927560 - L1MEc LINE L1 -5034 1183 1174 2288 102 0 0 chr15 38452961 38453254 -62927267 - AluSg SINE Alu -17 293 1 462 222 73 52 chr15 38453254 38453489 -62927032 - L1MEc LINE L1 -5043 1174 945 1938 137 7 17 chr15 38453489 38453789 -62926732 - AluSq SINE Alu -16 297 1 2309 93 13 0 chr15 38453789 38454089 -62926432 - AluSp SINE Alu -9 304 1 462 222 73 52 chr15 38454089 38454169 -62926352 - L1MEc LINE L1 -5271 946 862 213 303 204 23 chr15 38454665 38454797 -62925724 + L2 LINE L2 3113 3268 -4 237 216 81 14 chr15 38455835 38455909 -62924612 + L3b LINE CR1 1362 1440 -143 206 83 56 0 chr15 38456077 38456113 -62924408 + A-rich Low_complexity Low_complexity 4 41 0 2024 133 3 10 chr15 38456595 38456904 -62923617 - AluSx SINE Alu -5 307 1 1022 245 129 57 chr15 38457299 38458361 -62922160 + L1ME1 LINE L1 1317 2607 -3956 * 5892 147 36 30 chr15 38458333 38458926 -62921595 + L1PB1 LINE L1 4353 4941 -1446 2350 87 3 3 chr15 38458926 38459224 -62921297 + AluSx SINE Alu 1 298 -14 5892 147 36 30 chr15 38459224 38460001 -62920520 + L1PB1 LINE L1 4941 5736 -651 1778 125 87 3 chr15 38460001 38460289 -62920232 + AluSx SINE Alu 1 312 0 5892 147 36 30 chr15 38460289 38460944 -62919577 + L1PB1 LINE L1 5736 6386 -1 1416 210 55 31 chr15 38460939 38461000 -62919521 + L1ME1 LINE L1 2540 2598 -3784 * 2315 106 0 10 chr15 38461000 38461301 -62919220 + AluSq SINE Alu 1 298 -15 1416 210 55 31 chr15 38461301 38461658 -62918863 + L1ME1 LINE L1 2598 2968 -3414 2729 201 86 47 chr15 38461663 38462079 -62918442 + L1ME1 LINE L1 4984 5382 -1020 1833 154 10 17 chr15 38462079 38462214 -62918307 - AluJb SINE Alu -21 291 157 270 0 0 0 chr15 38462214 38462244 -62918277 + (TG)n Simple_repeat Simple_repeat 2 31 0 1833 154 10 17 chr15 38462244 38462401 -62918120 - AluJb SINE Alu -155 157 1 2172 123 0 10 chr15 38462409 38462709 -62917812 - AluSx SINE Alu -15 297 1 2729 201 86 47 chr15 38462709 38462756 -62917765 + L1ME1 LINE L1 5388 5432 -970 2073 137 10 3 chr15 38462756 38463063 -62917458 + AluSx SINE Alu 1 309 -3 2729 201 86 47 chr15 38463063 38463439 -62917082 + L1ME1 LINE L1 5432 5792 -610 2044 132 7 3 chr15 38463439 38463749 -62916772 - AluY SINE Alu 0 311 1 2729 201 86 47 chr15 38463749 38464168 -62916353 + L1ME1 LINE L1 5792 6288 -114 2305 104 3 3 chr15 38464213 38464521 -62916000 + AluSq SINE Alu 6 313 0 582 177 65 108 chr15 38465327 38465371 -62915150 + MER5B DNA MER1_type 1 45 -133 1539 176 60 25 chr15 38465371 38465533 -62914988 - AluJo SINE Alu -18 294 116 231 36 0 0 chr15 38465533 38465561 -62914960 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 1539 176 60 25 chr15 38465561 38465682 -62914839 - AluJo SINE Alu -196 116 1 582 177 65 108 chr15 38465682 38465823 -62914698 + MER5B DNA MER1_type 45 178 0 21 71 0 0 chr15 38465865 38465907 -62914614 + AT_rich Low_complexity Low_complexity 1 42 0 748 133 0 89 chr15 38465940 38466075 -62914446 + FLAM_A SINE Alu 11 133 -9 535 146 0 0 chr15 38468124 38468213 -62912308 - AluJ/FRAM SINE Alu 0 312 224 1685 207 0 10 chr15 38468283 38468592 -62911929 - AluJb SINE Alu -6 306 1 324 0 0 0 chr15 38468715 38468751 -62911770 + (CA)n Simple_repeat Simple_repeat 2 37 0 959 169 38 11 chr15 38468879 38469062 -62911459 - MER5A DNA MER1_type -1 188 1 186 265 20 0 chr15 38470114 38470163 -62910358 - L2 LINE L2 -84 3229 3180 186 333 30 10 chr15 38470573 38470672 -62909849 - L2 LINE L2 -605 2709 2609 2200 129 0 7 chr15 38470731 38471040 -62909481 - AluSx SINE Alu -5 307 1 2434 90 0 0 chr15 38471101 38471402 -62909119 - AluSg SINE Alu -3 307 7 2111 116 14 3 chr15 38471410 38471702 -62908819 - AluSq SINE Alu -17 296 2 304 130 0 0 chr15 38472793 38472847 -62907674 - L1ME4a LINE L1 -1 6120 6067 205 275 147 18 chr15 38473449 38473558 -62906963 + MIR SINE MIR 23 145 -63 2300 138 0 0 chr15 38473693 38474004 -62906517 + AluSq SINE Alu 1 311 -2 2209 119 0 19 chr15 38475052 38475212 -62905309 - AluSx SINE Alu -6 306 153 3409 103 34 16 chr15 38475212 38475716 -62904805 - LTR10D LTR ERV1 0 513 1 2209 119 0 19 chr15 38475716 38475867 -62904654 - AluSx SINE Alu -159 153 1 191 30 0 61 chr15 38476065 38476098 -62904423 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 2349 104 0 0 chr15 38476741 38477040 -62903481 + AluSx SINE Alu 1 299 -13 2303 116 3 0 chr15 38477045 38477355 -62903166 + AluSq SINE Alu 1 311 -2 437 316 50 9 chr15 38477396 38477614 -62902907 + MIR SINE MIR 24 250 -12 378 213 220 7 chr15 38479110 38479251 -62901270 + MIR SINE MIR 76 246 -16 2111 103 0 45 chr15 38480896 38481206 -62899315 + AluSc SINE Alu 1 296 -13 314 281 82 17 chr15 38481536 38481716 -62898805 + MIR SINE MIR 8 203 -59 1262 183 23 5 chr15 38483558 38483777 -62896744 - MER58A DNA MER1_type 0 224 2 2322 112 0 0 chr15 38484243 38484539 -62895982 + AluSx SINE Alu 1 296 -16 322 221 84 69 chr15 38484590 38484721 -62895800 - L1MC5 LINE L1 -121 7840 7708 222 316 42 0 chr15 38487050 38487145 -62893376 + L2 LINE L2 3162 3260 -12 252 264 70 97 chr15 38487205 38487837 -62892684 - L1MC4 LINE L1 -2 8040 7292 204 338 0 0 chr15 38489338 38489409 -62891112 + (CCCCAG)n Simple_repeat Simple_repeat 1 71 0 663 310 184 33 chr15 38499990 38500947 -62879574 - L2 LINE L2 -1 3312 2206 249 204 22 80 chr15 38501095 38501201 -62879320 - L1MC4a LINE L1 -1889 5919 5821 790 192 0 0 chr15 38501201 38501326 -62879195 - FLAM_C SINE Alu -8 125 1 249 204 22 80 chr15 38501326 38501356 -62879165 - L1MC4a LINE L1 -1987 5821 5791 2032 162 26 0 chr15 38501444 38501796 -62878725 + MER46B DNA MER2_type 1 236 0 1158 276 173 18 chr15 38501906 38502818 -62877703 - L1MC4a LINE L1 -753 5393 4885 341 129 71 0 chr15 38502965 38503035 -62877486 - L1MA6 LINE L1 0 7719 7645 5495 194 53 13 chr15 38503162 38503448 -62877073 - L1MA6 LINE L1 -68 7651 7378 2624 61 3 0 chr15 38503448 38503758 -62876763 - AluY SINE Alu 0 311 1 2112 139 0 0 chr15 38503761 38504055 -62876466 - AluSx SINE Alu -1 311 18 5495 194 53 13 chr15 38504055 38505613 -62874908 - L1MA6 LINE L1 -342 7377 5725 614 170 19 0 chr15 38505613 38505719 -62874802 + LTR59 LTR ERV1 1 108 -489 2222 112 7 7 chr15 38505739 38506043 -62874478 + AluSg SINE Alu 1 304 -6 1057 157 0 0 chr15 38506043 38506221 -62874300 + LTR59 LTR ERV1 85 262 -335 2403 96 0 0 chr15 38506227 38506528 -62873993 - AluSg SINE Alu -9 301 1 2002 192 7 7 chr15 38506528 38506971 -62873550 - L1MA6 LINE L1 -4385 3180 2738 812 177 0 8 chr15 38506997 38507121 -62873400 - FLAM_C SINE Alu -20 123 1 3229 220 22 37 chr15 38507121 38507377 -62873144 - L1MA6 LINE L1 -4809 2756 2498 2195 112 0 37 chr15 38507377 38507699 -62872822 - AluSg SINE Alu 0 310 1 3229 220 22 37 chr15 38507699 38507922 -62872599 - L1MA6 LINE L1 -5067 2498 2273 2455 86 0 9 chr15 38507922 38508237 -62872284 - AluSq SINE Alu -1 312 1 3229 220 22 37 chr15 38508237 38508702 -62871819 - L1MA6 LINE L1 -5292 2273 1825 1128 295 88 22 chr15 38508724 38509435 -62871086 - L1MA6 LINE L1 -6654 835 24 1685 166 10 28 chr15 38509470 38509760 -62870761 - AluSx SINE Alu -27 285 1 1972 186 0 6 chr15 38509762 38510074 -62870447 - AluSx SINE Alu -2 310 1 227 240 77 33 chr15 38510222 38510405 -62870116 - L1 LINE L1 -1658 4488 4298 2269 95 10 7 chr15 38510475 38510771 -62869750 - AluSx SINE Alu -15 297 1 235 249 116 64 chr15 38510929 38511102 -62869419 - L1 LINE L1 -2309 3837 3656 250 248 28 28 chr15 38511320 38511429 -62869092 + L1P3 LINE L1 5696 5804 -368 1788 113 0 8 chr15 38511490 38511738 -62868783 - AluSg SINE Alu -11 299 54 1550 175 77 0 chr15 38511913 38512187 -62868334 + AluJb SINE Alu 1 295 -17 920 240 18 22 chr15 38512312 38512537 -62867984 + MER58A DNA MER1_type 1 224 0 516 188 30 0 chr15 38512717 38512818 -62867703 - U13 snRNA snRNA 0 104 1 335 165 38 38 chr15 38512820 38512899 -62867622 - L1MC4a LINE L1 -376 7432 7354 412 169 56 0 chr15 38512902 38512991 -62867530 + MER53 DNA DNA 2 95 -94 1438 218 66 66 chr15 38513003 38513139 -62867382 - L1MC4a LINE L1 -451 7357 7222 1517 175 43 14 chr15 38513139 38513419 -62867102 + AluJb SINE Alu 1 288 -24 1438 218 66 66 chr15 38513419 38513430 -62867091 - L1MC4a LINE L1 -586 7222 7212 2076 108 0 0 chr15 38513430 38513707 -62866814 + AluSg SINE Alu 1 277 -33 1438 218 66 66 chr15 38513707 38514083 -62866438 - L1MC4a LINE L1 -596 7212 6830 1937 132 10 16 chr15 38514083 38514387 -62866134 - AluJb SINE Alu -10 302 1 1438 218 66 66 chr15 38514387 38514406 -62866115 - L1MC4a LINE L1 -977 6831 6813 1147 139 130 9 chr15 38514409 38514655 -62865866 - L1MB4 LINE L1 -50 6130 5855 849 238 67 67 chr15 38514655 38514916 -62865605 - MLT1C LTR MaLR 0 467 204 216 0 0 0 chr15 38514916 38514940 -62865581 + (TC)n Simple_repeat Simple_repeat 2 25 0 849 238 67 67 chr15 38514940 38514960 -62865561 - MLT1C LTR MaLR -262 205 186 660 244 24 18 chr15 38514992 38515160 -62865361 - FRAM SINE Alu 0 176 8 2476 76 0 3 chr15 38515165 38515466 -62865055 - AluSx SINE Alu -12 300 1 686 202 40 17 chr15 38515474 38515647 -62864874 - MLT1C LTR MaLR -290 177 1 6524 207 86 32 chr15 38515649 38516090 -62864431 - L1MB4 LINE L1 -327 5857 5441 765 0 83 24 chr15 38516090 38516259 -62864262 + (TA)n Simple_repeat Simple_repeat 2 180 0 6524 207 86 32 chr15 38516259 38516873 -62863648 - L1MB4 LINE L1 -743 5441 4861 734 167 0 0 chr15 38516873 38516987 -62863534 - FLAM_C SINE Alu -19 114 1 6524 207 86 32 chr15 38516987 38518214 -62862307 - L1MB4 LINE L1 -1323 4861 3116 2476 52 0 13 chr15 38518214 38518521 -62862000 - AluY SINE Alu -8 303 1 6524 207 86 32 chr15 38518521 38518776 -62861745 - L1MB4 LINE L1 -3068 3116 2876 331 169 31 0 chr15 38518815 38518880 -62861641 - FLAM_A SINE Alu -49 84 18 379 298 12 71 chr15 38518886 38519054 -62861467 - L1 LINE L1 -1085 5061 4904 417 325 118 44 chr15 38519062 38519536 -62860985 - L2 LINE L2 -1064 2250 1742 832 155 0 62 chr15 38519553 38519676 -62860845 + AluJb SINE Alu 1 113 -199 2073 74 56 11 chr15 38519676 38519961 -62860560 - AluSx SINE Alu -14 298 1 832 155 0 62 chr15 38519961 38519998 -62860523 + AluJb SINE Alu 113 151 -161 925 150 0 0 chr15 38521358 38521491 -62859030 + FLAM_C SINE Alu 1 133 0 2029 138 3 10 chr15 38521496 38521794 -62858727 + AluJb SINE Alu 1 296 -16 2356 85 3 19 chr15 38525506 38525813 -62854708 + AluSx SINE Alu 1 302 -10 630 253 44 16 chr15 38525905 38526087 -62854434 - MER5A DNA MER1_type -2 187 1 1925 138 14 14 chr15 38526483 38526780 -62853741 - AluJb SINE Alu -15 297 1 735 203 20 34 chr15 38527124 38527272 -62853249 - FRAM SINE Alu -14 162 17 1979 125 10 14 chr15 38527876 38528165 -62852356 - AluSx SINE Alu -24 288 1 2078 114 52 0 chr15 38529866 38530155 -62850366 + AluSg SINE Alu 1 304 -6 188 294 55 28 chr15 38530990 38531099 -62849422 - L3b LINE CR1 -316 1267 1156 827 231 20 25 chr15 38531123 38531322 -62849199 - MER58A DNA MER1_type -26 198 1 217 256 22 44 chr15 38532689 38532779 -62847742 + GA-rich Low_complexity Low_complexity 1 88 0 239 318 164 9 chr15 38536133 38536243 -62844278 - MIR SINE MIR -122 140 14 2310 91 7 7 chr15 38537433 38537729 -62842792 - AluSq SINE Alu -17 296 1 1526 163 26 64 chr15 38538760 38539073 -62841448 - AluJb SINE Alu -11 301 1 842 187 15 49 chr15 38540247 38540450 -62840071 + AluSp SINE Alu 108 303 -10 2070 129 0 29 chr15 38541329 38541640 -62838881 + AluSx SINE Alu 1 302 -10 2388 95 3 0 chr15 38541719 38542025 -62838496 + AluSq SINE Alu 1 307 -6 819 168 8 0 chr15 38542168 38542299 -62838222 + FLAM_A SINE Alu 2 133 0 1791 142 36 45 chr15 38542515 38542824 -62837697 - AluJo SINE Alu -4 308 3 2389 95 7 0 chr15 38543789 38544094 -62836427 + AluSp SINE Alu 1 307 -6 4694 184 55 25 chr15 38544094 38545519 -62835002 + L1M2c LINE L1 172 1904 -4885 2459 100 3 0 chr15 38545519 38545830 -62834691 + AluSx SINE Alu 1 312 0 4694 184 55 25 chr15 38545830 38545974 -62834547 + L1M2c LINE L1 1904 2042 -4747 4423 127 27 114 chr15 38546007 38547269 -62833252 + L1MA5A LINE L1 4403 5551 -743 2494 80 49 20 chr15 38547269 38547619 -62832902 + THE1B LTR MaLR 5 364 0 4810 98 30 43 chr15 38547619 38547851 -62832670 + L1MA5A LINE L1 5541 5775 -522 2059 120 3 3 chr15 38547851 38548165 -62832356 + AluSx SINE Alu 1 312 0 4810 98 30 43 chr15 38548165 38548500 -62832021 + L1MA5A LINE L1 5775 6113 -184 813 73 0 0 chr15 38548500 38548609 -62831912 + (TA)n Simple_repeat Simple_repeat 2 110 0 2273 122 3 0 chr15 38548618 38548929 -62831592 - AluSx SINE Alu 0 312 1 4810 98 30 43 chr15 38548929 38549108 -62831413 + L1MA5A LINE L1 6121 6288 -9 40351 73 10 6 chr15 38549554 38555674 -62824847 + L1PA6 LINE L1 11 6152 -2 275 375 62 0 chr15 38555750 38555862 -62824659 + L2 LINE L2 3138 3256 -16 181 327 64 36 chr15 38555897 38556007 -62824514 - L3 LINE CR1 -79 1498 1386 2313 84 3 10 chr15 38556380 38556689 -62823832 - AluSg1 SINE Alu -2 307 1 1745 202 58 106 chr15 38557444 38557999 -62822522 + MLT1F LTR MaLR 3 530 -12 881 273 5 5 chr15 38558080 38558300 -62822221 + AluJo SINE Alu 1 220 -92 266 111 0 0 chr15 38558300 38558336 -62822185 + AluJ SINE Alu 86 121 -181 225 0 0 0 chr15 38558336 38558361 -62822160 + (CAA)n Simple_repeat Simple_repeat 2 26 0 816 206 11 22 chr15 38558457 38558637 -62821884 + AluJ SINE Alu 123 300 -12 1224 99 0 12 chr15 38558692 38558887 -62821634 + AluSg/x SINE Alu 122 314 0 218 263 0 40 chr15 38559165 38559241 -62821280 + GA-rich Low_complexity Low_complexity 1 73 0 685 354 28 0 chr15 38559255 38559436 -62821085 - MER91A DNA MER1_type -8 188 3 355 235 51 51 chr15 38559955 38560053 -62820468 + MER5A DNA MER1_type 46 143 -46 192 152 0 0 chr15 38562371 38562404 -62818117 + (TAA)n Simple_repeat Simple_repeat 2 34 0 485 280 77 72 chr15 38563309 38563800 -62816721 + L1MEd LINE L1 563 1050 -5079 2251 112 0 13 chr15 38563800 38564113 -62816408 + AluSg SINE Alu 1 309 -1 485 280 77 72 chr15 38564113 38564540 -62815981 + L1MEd LINE L1 1050 1461 -4668 2105 131 6 16 chr15 38564540 38564854 -62815667 + AluSx SINE Alu 1 311 -1 485 280 77 72 chr15 38564854 38565044 -62815477 + L1MEd LINE L1 1461 1649 -4480 2058 127 10 7 chr15 38565115 38565415 -62815106 + AluSx SINE Alu 1 301 -11 418 226 0 0 chr15 38565435 38565519 -62815002 - AluS SINE Alu -7 303 220 255 188 0 52 chr15 38565761 38565857 -62814664 + GA-rich Low_complexity Low_complexity 5 95 0 274 321 25 0 chr15 38565857 38565938 -62814583 + G-rich Low_complexity Low_complexity 1 83 0 1611 134 4 41 chr15 38565949 38566217 -62814304 - AluJb SINE Alu -52 260 3 364 283 45 70 chr15 38566268 38566512 -62814009 + L1MEd LINE L1 1847 2084 -4226 2112 124 7 0 chr15 38566570 38566860 -62813661 + AluSx SINE Alu 1 292 -20 336 275 85 48 chr15 38566870 38567186 -62813335 + L1MEd LINE L1 2118 2445 -3684 283 214 101 0 chr15 38567183 38567272 -62813249 + L1MEd LINE L1 2866 2963 -3166 * 1291 248 15 18 chr15 38567281 38567677 -62812844 - L1M4 LINE L1 -3014 3132 2738 227 129 0 0 chr15 38567678 38567709 -62812812 + LTR16A1 LTR ERVL 427 457 0 2277 104 0 0 chr15 38567970 38568258 -62812263 - AluSx SINE Alu -24 288 1 1851 153 41 10 chr15 38568990 38569317 -62811204 + MLT1A1 LTR MaLR 1 403 -29 2374 112 0 0 chr15 38569666 38569978 -62810543 + AluSx SINE Alu 1 312 0 2379 87 0 0 chr15 38570165 38570463 -62810058 - AluSq SINE Alu -14 299 2 1557 193 28 8 chr15 38570509 38570914 -62809607 - MER65C LTR ERV1 0 461 1 2279 112 0 3 chr15 38571002 38571307 -62809214 - AluSx SINE Alu -8 304 1 24 0 0 0 chr15 38571627 38571651 -62808870 + AT_rich Low_complexity Low_complexity 1 24 0 192 77 0 0 chr15 38572007 38572033 -62808488 + (A)n Simple_repeat Simple_repeat 1 26 0 765 244 85 10 chr15 38572974 38573175 -62807346 + MER58A DNA MER1_type 9 224 0 229 128 136 32 chr15 38573317 38573393 -62807128 - MER58 DNA MER1_type 0 2420 131 819 225 58 0 chr15 38573395 38573586 -62806935 + L1MC4a LINE L1 7148 7349 -459 767 298 103 39 chr15 38573578 38573704 -62806817 - L1M4 LINE L1 -3129 3017 2901 * 2107 163 9 11 chr15 38573704 38574053 -62806468 - MER7A DNA MER2_type 0 346 1 767 298 103 39 chr15 38574053 38574776 -62805745 - L1M4 LINE L1 -3245 2901 2113 751 189 43 188 chr15 38574795 38575338 -62805183 - L1MA8 LINE L1 -23 6268 5814 2125 139 0 0 chr15 38575338 38575647 -62804874 + AluSx SINE Alu 1 309 -3 751 189 43 188 chr15 38575647 38575700 -62804821 - L1MA8 LINE L1 -477 5814 5755 207 0 0 0 chr15 38575741 38575764 -62804757 + (CA)n Simple_repeat Simple_repeat 2 24 0 587 208 0 0 chr15 38575767 38575868 -62804653 - L1MA8 LINE L1 -533 5779 5679 1054 185 23 23 chr15 38575875 38576091 -62804430 + L1 LINE L1 4848 5063 -1083 2032 153 0 3 chr15 38576164 38576472 -62804049 - AluJb SINE Alu -5 307 1 2007 128 0 45 chr15 38576586 38576763 -62803758 - AluSg SINE Alu -12 298 139 2303 85 10 13 chr15 38576763 38577070 -62803451 - AluY SINE Alu -5 306 1 2007 128 0 45 chr15 38577070 38577204 -62803317 - AluSg SINE Alu -171 139 1 301 274 33 104 chr15 38577241 38577453 -62803068 - HAL1b LINE L1 -1150 198 2 717 186 0 125 chr15 38577538 38577719 -62802802 + LTR41 LTR ERVL 550 693 -80 1193 121 24 48 chr15 38577719 38577746 -62802775 + L1MA4 LINE L1 6092 6118 -182 2082 114 17 10 chr15 38577746 38578043 -62802478 + AluSx SINE Alu 1 299 -13 1193 121 24 48 chr15 38578043 38578221 -62802300 + L1MA4 LINE L1 6118 6292 -8 717 186 0 125 chr15 38578221 38578287 -62802234 + LTR41 LTR ERVL 693 766 -7 23 0 0 0 chr15 38578453 38578476 -62802045 + AT_rich Low_complexity Low_complexity 1 23 0 242 305 136 40 chr15 38578881 38579005 -62801516 + MIR3 SINE MIR 20 155 -53 473 294 82 6 chr15 38579011 38579181 -62801340 - MER5A DNA MER1_type 0 189 7 1034 185 49 0 chr15 38579289 38579451 -62801070 + FAM SINE Alu 1 170 -5 2033 114 45 0 chr15 38579454 38579744 -62800777 + AluSq SINE Alu 1 303 -10 756 162 9 0 chr15 38579821 38579932 -62800589 - FRAM SINE Alu -30 146 35 183 189 0 0 chr15 38579981 38580034 -62800487 + A-rich Low_complexity Low_complexity 1 53 0 259 219 288 0 chr15 38580880 38580953 -62799568 + L1MC4 LINE L1 7797 7890 -152 330 157 29 5 chr15 38581394 38581482 -62799039 - L1MC5 LINE L1 -946 6839 6743 243 309 155 72 chr15 38581483 38581530 -62798991 - L2 LINE L2 -568 2746 2704 1616 123 0 0 chr15 38581530 38581750 -62798771 + AluSg/x SINE Alu 82 301 -9 243 309 155 72 chr15 38581750 38581883 -62798638 - L2 LINE L2 -610 2704 2551 754 223 82 98 chr15 38581937 38582008 -62798513 - L2 LINE L2 -1041 2273 2202 2033 122 14 3 chr15 38582008 38582296 -62798225 + AluSx SINE Alu 1 291 -21 754 223 82 98 chr15 38582296 38582529 -62797992 - L2 LINE L2 -1112 2202 1974 214 234 31 16 chr15 38583653 38583717 -62796804 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 2340 104 0 0 chr15 38583763 38584070 -62796451 - AluSx SINE Alu -5 307 1 1099 159 96 23 chr15 38584801 38584976 -62795545 + MER46A DNA MER2_type 1 197 -2534 2248 93 0 3 chr15 38584976 38585266 -62795255 + AluY SINE Alu 3 291 -20 1099 159 96 23 chr15 38585266 38585310 -62795211 + MER46A DNA MER2_type 197 236 0 2212 111 3 10 chr15 38585316 38585622 -62794899 - AluSx SINE Alu -8 304 1 1339 166 0 9 chr15 38585786 38586009 -62794512 + AluJb SINE Alu 86 306 -6 254 262 97 10 chr15 38586018 38586121 -62794400 + L1ME4a LINE L1 6008 6119 -2 207 0 0 0 chr15 38588457 38588480 -62792041 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2299 132 11 17 chr15 38588526 38588609 -62791912 - MER7A DNA MER2_type -2693 345 263 3594 60 25 9 chr15 38588609 38589046 -62791475 + MLT2A1 LTR ERVL 1 444 0 2299 132 11 17 chr15 38589046 38589311 -62791210 - MER7A DNA MER2_type -2775 263 1 1750 152 64 0 chr15 38589635 38589918 -62790603 + AluSx SINE Alu 1 301 -11 23 33 0 0 chr15 38589997 38590027 -62790494 + AT_rich Low_complexity Low_complexity 1 30 0 2220 108 14 0 chr15 38590049 38590344 -62790177 + AluSq SINE Alu 1 299 -14 279 259 170 12 chr15 38590344 38590481 -62790040 - MIR SINE MIR -61 147 16 316 228 89 20 chr15 38590998 38591099 -62789422 - L2 LINE L2 -48 3265 3158 193 330 100 0 chr15 38591109 38591209 -62789312 - L2 LINE L2 -33 3280 3171 199 302 205 39 chr15 38591273 38591478 -62789043 - L2 LINE L2 -215 3057 2819 442 251 55 18 chr15 38591545 38591708 -62788813 + MLT1J2 LTR MaLR 43 211 -239 2176 122 3 3 chr15 38591868 38592171 -62788350 + AluSx SINE Alu 1 303 -9 664 318 111 46 chr15 38592210 38592623 -62787898 + L2 LINE L2 2605 3038 -234 1579 67 10 0 chr15 38592626 38592821 -62787700 - MER30 DNA MER1_type -33 197 1 198 313 0 0 chr15 38592824 38592872 -62787649 + L2 LINE L2 3020 3067 -246 1470 175 16 91 chr15 38593290 38593623 -62786898 - AluJb SINE Alu 0 310 1 1341 203 21 28 chr15 38594453 38594743 -62785778 + AluJb SINE Alu 1 288 -24 21 0 0 0 chr15 38596867 38596888 -62783633 + AT_rich Low_complexity Low_complexity 1 21 0 1869 171 0 11 chr15 38596889 38597176 -62783345 - AluJb SINE Alu -24 288 5 26 50 0 0 chr15 38597785 38597825 -62782696 + AT_rich Low_complexity Low_complexity 1 40 0 1050 286 85 66 chr15 38598064 38599033 -62781488 + L1MEd LINE L1 268 1254 -4865 336 280 72 88 chr15 38599044 38599126 -62781395 + HAL1 LINE L1 1379 1461 -1046 1900 175 7 0 chr15 38599126 38599429 -62781092 + AluJb SINE Alu 1 305 -7 336 280 72 88 chr15 38599429 38599449 -62781072 + HAL1 LINE L1 1461 1480 -1027 1972 124 0 42 chr15 38599449 38599756 -62780765 + AluSx SINE Alu 1 294 -18 336 280 72 88 chr15 38599756 38599845 -62780676 + HAL1 LINE L1 1480 1568 -939 1553 113 0 5 chr15 38599901 38600122 -62780399 - AluSq SINE Alu -7 306 87 1703 199 7 0 chr15 38600183 38600469 -62780052 + AluJo SINE Alu 1 288 -24 512 133 8 0 chr15 38601745 38601865 -62778656 + (TA)n Simple_repeat Simple_repeat 2 122 0 438 114 0 0 chr15 38601935 38602014 -62778507 + (TA)n Simple_repeat Simple_repeat 2 80 0 1886 136 0 0 chr15 38602014 38602264 -62778257 - AluSg SINE Alu -23 287 38 1906 116 4 4 chr15 38602559 38602810 -62777711 + AluSg SINE Alu 35 288 -22 186 43 0 0 chr15 38602810 38602833 -62777688 + (TA)n Simple_repeat Simple_repeat 1 23 0 1906 116 4 4 chr15 38602833 38602857 -62777664 + AluSg SINE Alu 287 310 0 249 237 17 17 chr15 38603574 38603633 -62776888 + L2 LINE L2 2759 2817 -497 491 257 52 64 chr15 38603704 38603953 -62776568 + L2 LINE L2 2938 3183 -130 1013 164 0 13 chr15 38603971 38604130 -62776391 - FRAM SINE Alu -23 153 1 304 266 57 32 chr15 38604178 38604302 -62776219 - MIR SINE MIR -89 173 47 2403 66 0 3 chr15 38604324 38604627 -62775894 + AluY SINE Alu 1 302 -9 344 332 84 0 chr15 38604769 38604968 -62775553 - L1M4 LINE L1 -2841 3305 3073 575 257 9 26 chr15 38605069 38605512 -62775009 + GA-rich Low_complexity Low_complexity 1 435 0 208 135 0 0 chr15 38605532 38605569 -62774952 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 238 136 0 0 chr15 38605725 38605769 -62774752 + L1ME4a LINE L1 6074 6117 -4 1155 64 7 0 chr15 38605796 38605936 -62774585 + AluSc SINE Alu 1 141 -168 234 57 0 0 chr15 38605937 38605972 -62774549 + Alu SINE Alu 262 296 -5 1301 232 25 71 chr15 38607059 38607327 -62773194 + L1MC4a LINE L1 5568 5798 -2010 1276 168 6 123 chr15 38607327 38607667 -62772854 + AluJb SINE Alu 1 300 -12 1301 232 25 71 chr15 38607667 38607958 -62772563 + L1MC4a LINE L1 5798 6101 -1707 913 156 75 10 chr15 38608012 38608211 -62772310 - L1ME1 LINE L1 -6 6160 5949 * 1090 187 25 22 chr15 38608208 38608288 -62772233 - L1ME1 LINE L1 -662 5504 5426 2435 84 3 3 chr15 38608288 38608598 -62771923 - AluY SINE Alu -1 310 1 1090 187 25 22 chr15 38608598 38608885 -62771636 - L1ME1 LINE L1 -740 5426 5149 1114 81 81 11 chr15 38610271 38610457 -62770064 - MER30 DNA MER1_type -31 199 1 * 2303 146 17 15 chr15 38610457 38610866 -62769655 - MSTB1 LTR MaLR -22 410 1 745 207 72 15 chr15 38610868 38611130 -62769391 + L1MD3 LINE L1 6091 7983 -1 1124 185 19 0 chr15 38611271 38611487 -62769034 + L1PA13 LINE L1 5938 6157 -6 185 0 40 0 chr15 38611535 38611560 -62768961 + (TAA)n Simple_repeat Simple_repeat 2 27 0 739 221 21 14 chr15 38611573 38611718 -62768803 + FRAM SINE Alu 1 146 -30 1941 126 0 14 chr15 38612039 38612350 -62768171 + AluSx SINE Alu 4 310 0 680 195 0 0 chr15 38612350 38612478 -62768043 - MER3 DNA MER1_type -81 128 1 48 0 0 0 chr15 38612847 38612895 -62767626 + AT_rich Low_complexity Low_complexity 1 48 0 2218 105 0 30 chr15 38613817 38614122 -62766399 + AluSg SINE Alu 1 296 -14 959 173 6 0 chr15 38614918 38615080 -62765441 - FAM SINE Alu -11 164 2 2292 87 3 7 chr15 38615574 38615872 -62764649 - AluSq SINE Alu -16 297 1 50 42 0 0 chr15 38616031 38616102 -62764419 + AT_rich Low_complexity Low_complexity 1 71 0 2240 96 0 0 chr15 38616109 38616400 -62764121 + AluY SINE Alu 1 291 -20 279 79 0 0 chr15 38616400 38616438 -62764083 + (TG)n Simple_repeat Simple_repeat 1 38 0 291 184 115 0 chr15 38616510 38616597 -62763924 + MIR SINE MIR 96 192 -70 663 163 82 22 chr15 38616611 38616746 -62763775 - FLAM_C SINE Alu 0 143 1 237 344 0 0 chr15 38616747 38616811 -62763710 + MIR SINE MIR 199 262 0 358 329 150 0 chr15 38616882 38617049 -62763472 - MIR SINE MIR -51 211 20 26 82 0 0 chr15 38617705 38617766 -62762755 + AT_rich Low_complexity Low_complexity 1 61 0 1304 176 20 8 chr15 38617963 38618213 -62762308 + Tigger7 DNA MER2_type 12 264 -2223 425 190 13 0 chr15 38618217 38618296 -62762225 + Tigger7 DNA MER2_type 2408 2487 0 1389 96 5 5 chr15 38618384 38618592 -62761929 + L1PA14 LINE L1 5944 6151 -10 198 0 0 0 chr15 38618633 38618655 -62761866 + (A)n Simple_repeat Simple_repeat 1 22 0 448 171 15 141 chr15 38618767 38618966 -62761555 - L1MC5 LINE L1 -58 7903 7730 1680 167 31 24 chr15 38618976 38619113 -62761408 + AluJb SINE Alu 1 136 -176 2168 91 0 14 chr15 38619113 38619428 -62761093 + AluSc SINE Alu 1 311 0 1680 167 31 24 chr15 38619428 38619582 -62760939 + AluJb SINE Alu 136 295 -17 1185 222 44 103 chr15 38619651 38620053 -62760468 + L1MC5 LINE L1 6558 6913 -1048 1589 131 0 0 chr15 38620053 38620274 -62760247 + AluSg/x SINE Alu 72 292 -18 1185 222 44 103 chr15 38620274 38620566 -62759955 + L1MC5 LINE L1 6913 7221 -740 1242 202 112 78 chr15 38620581 38621337 -62759184 + L1MC5 LINE L1 7238 7925 -36 304 300 9 27 chr15 38622255 38622365 -62758156 + MIR SINE MIR 94 201 -61 2218 104 7 0 chr15 38622463 38622761 -62757760 + AluSx SINE Alu 1 300 -12 2244 121 3 3 chr15 38622761 38623067 -62757454 + AluSx SINE Alu 1 306 -6 2165 96 3 0 chr15 38623312 38623617 -62756904 + AluSx SINE Alu 2 307 0 303 28 0 0 chr15 38623739 38623775 -62756746 + (TG)n Simple_repeat Simple_repeat 2 37 0 2088 137 0 0 chr15 38623919 38624211 -62756310 + AluSx SINE Alu 1 292 -20 5198 129 1 2 chr15 38624322 38625148 -62755373 - L1PA15 LINE L1 0 6165 5341 959 219 31 46 chr15 38625152 38625412 -62755109 + MSTD LTR MaLR 141 396 0 207 236 18 0 chr15 38626017 38626072 -62754449 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 204 313 0 0 chr15 38626422 38626470 -62754051 - MER5B DNA MER1_type -1 177 130 2022 133 0 13 chr15 38626596 38626896 -62753625 - AluJb SINE Alu -16 296 1 839 141 15 7 chr15 38627446 38627581 -62752940 - AluJo SINE Alu -176 136 1 821 146 8 8 chr15 38627991 38628121 -62752400 + FLAM_A SINE Alu 1 130 -3 1250 187 90 162 chr15 38628503 38628864 -62751657 + LTR8A LTR ERV1 34 315 -412 2363 95 0 0 chr15 38628864 38629168 -62751353 + AluSg SINE Alu 1 304 -6 1250 187 90 162 chr15 38629168 38629554 -62750967 + LTR8A LTR ERV1 315 727 0 1827 160 18 0 chr15 38629666 38629947 -62750574 + AluJb SINE Alu 1 286 -26 517 274 240 0 chr15 38629994 38630173 -62750348 - MIR SINE MIR -32 230 9 313 265 162 0 chr15 38630275 38630392 -62750129 - L2 LINE L2 -31 3282 3147 1627 151 16 69 chr15 38630672 38630770 -62749751 + MER2 DNA MER2_type 1 103 -242 1755 108 115 11 chr15 38630770 38631048 -62749473 + AluSg1 SINE Alu 2 308 -1 1627 151 16 69 chr15 38631048 38631094 -62749427 + MER2 DNA MER2_type 103 150 -195 1748 171 67 6 chr15 38631094 38631421 -62749100 - MER7A DNA MER2_type 0 346 2 1627 151 16 69 chr15 38631421 38631566 -62748955 + MER2 DNA MER2_type 150 271 -74 2073 123 36 0 chr15 38631566 38631867 -62748654 - AluSx SINE Alu 0 312 1 1627 151 16 69 chr15 38631867 38631939 -62748582 + MER2 DNA MER2_type 271 345 0 1706 207 127 71 chr15 38631955 38632521 -62748000 + MER21B LTR ERV1 5 602 -261 1972 215 66 11 chr15 38632521 38633226 -62747295 - L1ME LINE L1 -700 5860 5122 812 234 34 24 chr15 38633231 38633440 -62747081 - AluJo SINE Alu -5 307 97 447 151 173 7 chr15 38633441 38633580 -62746941 - L1MA8 LINE L1 -4 6287 6126 1800 193 57 39 chr15 38633598 38633879 -62746642 - L1ME LINE L1 -1433 5107 4832 2398 84 3 0 chr15 38633879 38634175 -62746346 - AluSp SINE Alu -16 297 1 1800 193 57 39 chr15 38634175 38634458 -62746063 - L1ME LINE L1 -1708 4832 4533 1578 233 86 10 chr15 38634467 38635096 -62745425 - L1MDa LINE L1 -4992 1548 916 458 358 22 19 chr15 38635634 38635950 -62744571 - L1MDa LINE L1 -6203 337 21 23 0 0 0 chr15 38636020 38636043 -62744478 + AT_rich Low_complexity Low_complexity 1 23 0 2307 78 0 69 chr15 38636329 38636662 -62743859 + AluY SINE Alu 1 310 -1 191 316 59 46 chr15 38636724 38636876 -62743645 - L2 LINE L2 -479 2835 2682 305 237 11 54 chr15 38637002 38637095 -62743426 - L1MC4 LINE L1 -1340 6702 6614 2201 122 3 0 chr15 38637458 38637754 -62742767 - AluSx SINE Alu -15 297 1 24 0 0 0 chr15 38638865 38638889 -62741632 + AT_rich Low_complexity Low_complexity 1 24 0 1088 127 0 0 chr15 38639135 38639293 -62741228 + AluSg/x SINE Alu 152 309 -3 1830 179 0 10 chr15 38639316 38639624 -62740897 - AluJo SINE Alu -7 305 1 942 179 53 39 chr15 38639766 38639973 -62740548 + MER6B DNA MER2_type 1 210 0 869 130 0 8 chr15 38640459 38640590 -62739931 - AluSg/x SINE Alu -9 301 172 902 231 36 100 chr15 38640695 38641052 -62739469 + L1MC5 LINE L1 6668 6976 -985 2201 54 18 4 chr15 38641052 38641367 -62739154 - AluY SINE Alu 0 319 1 902 231 36 100 chr15 38641367 38641589 -62738932 + L1MC5 LINE L1 6976 7211 -750 594 269 40 37 chr15 38641614 38641963 -62738558 + L1MC5 LINE L1 7315 7664 -297 405 180 79 34 chr15 38642008 38642097 -62738424 + FLAM_C SINE Alu 35 127 -16 980 118 56 36 chr15 38642125 38642166 -62738355 + L1MC2 LINE L1 6129 6168 -176 2135 131 3 0 chr15 38642166 38642463 -62738058 + AluSx SINE Alu 2 299 -13 980 118 56 36 chr15 38642463 38642616 -62737905 + L1MC2 LINE L1 6168 6327 -17 1873 177 0 13 chr15 38642619 38642924 -62737597 + AluJo SINE Alu 1 301 -11 1811 141 50 0 chr15 38643186 38643463 -62737058 + AluSx SINE Alu 1 291 -21 234 0 0 0 chr15 38643468 38643494 -62737027 + (CAA)n Simple_repeat Simple_repeat 2 27 0 348 197 89 94 chr15 38643711 38643924 -62736597 + L1MC5 LINE L1 7715 7926 -35 * 6020 166 43 78 chr15 38643916 38644494 -62736027 + L1MC3 LINE L1 3 600 -5826 1861 158 0 23 chr15 38644494 38644797 -62735724 - AluJb SINE Alu -16 296 1 6020 166 43 78 chr15 38644797 38645756 -62734765 + L1MC3 LINE L1 600 1486 -4940 263 78 0 109 chr15 38645762 38645826 -62734695 + L1MCa LINE L1 1459 1515 -4911 180 0 0 0 chr15 38645826 38645846 -62734675 + (CAA)n Simple_repeat Simple_repeat 2 21 0 507 182 11 0 chr15 38645851 38645939 -62734582 + AluJo SINE Alu 1 89 -223 323 157 129 0 chr15 38645946 38646016 -62734505 + AluJo SINE Alu 64 142 -160 1912 95 60 73 chr15 38646019 38646334 -62734187 - AluSq SINE Alu -2 311 1 9747 208 17 25 chr15 38646345 38647992 -62732529 + L1 LINE L1 2335 3955 -2191 2204 110 3 0 chr15 38647992 38648291 -62732230 + AluSp SINE Alu 1 300 -13 9747 208 17 25 chr15 38648291 38649660 -62730861 + L1 LINE L1 3955 5334 -812 3351 173 79 31 chr15 38649645 38649688 -62730833 + L1MC3 LINE L1 1560 1599 -4827 * 2128 126 3 0 chr15 38649688 38649989 -62730532 + AluSp SINE Alu 1 302 -11 3351 173 79 31 chr15 38649989 38650552 -62729969 + L1MC3 LINE L1 1599 2134 -4292 1565 167 25 65 chr15 38650552 38650876 -62729645 + AluSx SINE Alu 1 311 -1 3351 173 79 31 chr15 38650876 38650924 -62729597 + L1MC3 LINE L1 2134 2178 -4248 1653 212 0 6 chr15 38650924 38651235 -62729286 + AluJo SINE Alu 1 309 -3 3351 173 79 31 chr15 38651235 38651543 -62728978 + L1MC3 LINE L1 2178 2470 -3956 627 233 25 0 chr15 38651543 38651688 -62728833 + FLAM_A SINE Alu 1 148 0 3351 173 79 31 chr15 38651688 38652348 -62728173 + L1MC3 LINE L1 2470 3336 -3090 2665 42 0 6 chr15 38652348 38652661 -62727860 + AluY SINE Alu 1 311 0 3351 173 79 31 chr15 38652661 38652806 -62727715 + L1MC3 LINE L1 3336 3473 -2953 * 3502 174 111 1 chr15 38652802 38653550 -62726971 + L1MC3 LINE L1 5501 5683 -743 320 152 0 0 chr15 38653555 38653601 -62726920 + Tigger5 DNA MER2_type 2 47 -2276 * 479 114 29 0 chr15 38653578 38653648 -62726873 + Tigger5 DNA MER2_type 2251 2322 -1 1611 127 45 15 chr15 38653656 38653923 -62726598 + L1MC1 LINE L1 6059 6333 0 1751 146 7 21 chr15 38653960 38654287 -62726234 + AluJo SINE Alu 1 323 0 1933 150 0 3 chr15 38654481 38654774 -62725747 - AluSx SINE Alu -20 292 1 1990 144 13 3 chr15 38655280 38655586 -62724935 + AluSx SINE Alu 1 309 -3 2316 108 0 0 chr15 38655966 38656262 -62724259 + AluSc SINE Alu 1 296 -13 26 88 0 0 chr15 38658213 38658281 -62722240 + AT_rich Low_complexity Low_complexity 1 68 0 2157 121 0 7 chr15 38658535 38658840 -62721681 + AluSx SINE Alu 1 303 -9 2301 109 0 3 chr15 38659689 38660002 -62720519 - AluSx SINE Alu 0 312 1 2330 85 7 0 chr15 38660091 38660384 -62720137 + AluSg SINE Alu 1 295 -15 666 249 166 116 chr15 38660737 38661010 -62719511 + MLT1H1 LTR MaLR 1 259 -296 2393 91 3 0 chr15 38661010 38661317 -62719204 + AluSx SINE Alu 1 308 -4 666 249 166 116 chr15 38661317 38661610 -62718911 + MLT1H1 LTR MaLR 259 555 0 23 0 0 0 chr15 38662099 38662122 -62718399 + AT_rich Low_complexity Low_complexity 1 23 0 2424 192 73 86 chr15 38662190 38663076 -62717445 + L1MC5 LINE L1 6823 7697 -264 755 224 107 15 chr15 38663152 38663415 -62717106 + L1MC5 LINE L1 7645 7931 -30 1653 60 5 41 chr15 38663449 38663667 -62716854 - AluY SINE Alu -101 210 1 324 0 0 0 chr15 38663878 38663914 -62716607 + (CA)n Simple_repeat Simple_repeat 2 37 0 527 277 105 36 chr15 38664583 38664780 -62715741 + L1MC4a LINE L1 5816 5998 -1810 979 213 36 41 chr15 38664780 38665001 -62715520 - MER58A DNA MER1_type 0 224 5 527 277 105 36 chr15 38665001 38665024 -62715497 + L1MC4a LINE L1 5998 6018 -1790 1807 196 0 0 chr15 38665024 38665336 -62715185 + AluJo SINE Alu 1 312 0 527 277 105 36 chr15 38665336 38665446 -62715075 + L1MC4a LINE L1 6018 6170 -1638 1776 191 0 22 chr15 38665689 38666003 -62714518 - AluJo SINE Alu -5 307 1 233 191 0 0 chr15 38666183 38666230 -62714291 + L1PB1 LINE L1 6105 6151 0 21 0 0 0 chr15 38666230 38666251 -62714270 + AT_rich Low_complexity Low_complexity 1 21 0 2211 120 0 3 chr15 38666309 38666617 -62713904 + AluSx SINE Alu 1 307 -5 2985 241 92 59 chr15 38666629 38666901 -62713620 + L1MDa LINE L1 1001 1263 -5277 2376 91 3 0 chr15 38666901 38667198 -62713323 + AluSg SINE Alu 1 298 -12 2985 241 92 59 chr15 38667198 38667626 -62712895 + L1MDa LINE L1 1263 1676 -4864 1935 134 0 50 chr15 38667626 38667967 -62712554 + AluSx SINE Alu 1 326 0 2985 241 92 59 chr15 38667967 38668409 -62712112 + L1MDa LINE L1 1676 2102 -4438 2371 81 17 0 chr15 38668409 38668706 -62711815 + AluSp SINE Alu 1 302 -11 2985 241 92 59 chr15 38668706 38669561 -62710960 + L1MDa LINE L1 2102 3002 -3538 341 211 10 106 chr15 38669624 38669728 -62710793 + MER21B LTR ERV1 3 96 -767 905 207 88 23 chr15 38669843 38670060 -62710461 + MER21B LTR ERV1 100 330 -533 1397 185 115 61 chr15 38670068 38670495 -62710026 + LTR7 LTR ERV1 1 450 0 9123 197 46 16 chr15 38670495 38672980 -62707541 + HERVH LTR ERV1 1 2805 -4908 345 71 43 100 chr15 38673081 38673151 -62707370 + HERVH LTR ERV1 7648 7713 0 792 159 89 58 chr15 38673151 38673540 -62706981 + LTR7 LTR ERV1 1 443 -7 613 134 28 113 chr15 38673597 38673739 -62706782 + MER21B LTR ERV1 406 615 -316 1690 212 94 118 chr15 38673855 38674061 -62706460 + MER21B LTR ERV1 65 275 -588 2205 89 0 20 chr15 38674061 38674365 -62706156 - AluSx SINE Alu -14 298 1 1929 139 20 10 chr15 38674365 38674665 -62705856 - AluJo SINE Alu -8 304 1 1690 212 94 118 chr15 38674665 38675149 -62705372 + MER21B LTR ERV1 273 739 -124 588 218 60 87 chr15 38675165 38675431 -62705090 + L1MDa LINE L1 3008 3266 -3274 669 235 12 18 chr15 38675446 38675616 -62704905 + MER58A DNA MER1_type 45 213 -11 1984 155 7 0 chr15 38675616 38675920 -62704601 + AluJo SINE Alu 1 306 -6 2321 106 3 3 chr15 38675920 38676231 -62704290 + AluSx SINE Alu 1 312 0 436 187 106 0 chr15 38676257 38676380 -62704141 + L1MDa LINE L1 3270 3405 -3135 1485 177 36 18 chr15 38676544 38676821 -62703700 + AluJo SINE Alu 1 282 -30 39 22 0 0 chr15 38676821 38676867 -62703654 + AT_rich Low_complexity Low_complexity 1 46 0 1803 255 79 14 chr15 38676876 38677283 -62703238 + L1MDa LINE L1 3437 3816 -2724 2628 118 14 11 chr15 38677283 38677646 -62702875 + THE1B LTR MaLR 1 364 0 1803 255 79 14 chr15 38677646 38677803 -62702718 + L1MDa LINE L1 3816 3961 -2579 1762 179 3 7 chr15 38677803 38678099 -62702422 + AluJb SINE Alu 5 299 -13 1803 255 79 14 chr15 38678099 38678420 -62702101 + L1MDa LINE L1 3961 4412 -2128 616 249 72 9 chr15 38678439 38678660 -62701861 + L1MDa LINE L1 4973 5207 -1333 1100 153 6 6 chr15 38678670 38678846 -62701675 + L1PA15 LINE L1 5990 6165 0 2486 74 0 0 chr15 38678869 38679166 -62701355 - AluY SINE Alu -14 297 1 934 130 14 0 chr15 38679178 38679324 -62701197 - L1MB7 LINE L1 -105 6079 5932 663 156 75 96 chr15 38679321 38679373 -62701148 + L1MDa LINE L1 5240 5292 -1248 * 2109 105 7 11 chr15 38679373 38679689 -62700832 + AluSx SINE Alu 1 315 0 663 156 75 96 chr15 38679689 38679834 -62700687 + L1MDa LINE L1 5292 5434 -1106 1814 146 3 29 chr15 38679834 38680150 -62700371 + AluJo SINE Alu 1 308 -4 351 184 257 33 chr15 38680159 38680190 -62700331 + Charlie1 DNA MER1_type 2575 2598 -163 2221 92 6 29 chr15 38680190 38680506 -62700015 - AluSg SINE Alu -1 309 1 351 184 257 33 chr15 38680506 38680626 -62699895 + Charlie1 DNA MER1_type 2598 2760 -1 275 295 13 0 chr15 38681281 38681359 -62699162 + MER117 DNA MER1_type 54 132 -65 231 224 0 35 chr15 38681384 38681442 -62699079 - L2 LINE L2 0 3313 3258 462 242 30 15 chr15 38681446 38681573 -62698948 + HAL1 LINE L1 100 229 -2274 378 0 0 0 chr15 38681573 38681615 -62698906 + (CA)n Simple_repeat Simple_repeat 2 43 0 1122 184 0 5 chr15 38681659 38681849 -62698672 + AluJb SINE Alu 3 191 -121 1364 153 160 8 chr15 38682022 38682290 -62698231 + AluSg1 SINE Alu 1 309 0 242 211 0 0 chr15 38682295 38682347 -62698174 + HAL1 LINE L1 2124 2175 -332 811 289 66 29 chr15 38682364 38682714 -62697807 + HAL1 LINE L1 2145 2507 0 1654 164 3 21 chr15 38682760 38683047 -62697474 - AluJb SINE Alu -30 282 1 2137 86 0 47 chr15 38683078 38683208 -62697313 + AluSq SINE Alu 16 150 -163 2255 78 10 7 chr15 38683208 38683501 -62697020 + AluSc SINE Alu 1 294 -15 2137 86 0 47 chr15 38683501 38683671 -62696850 + AluSq SINE Alu 150 302 -11 331 98 0 0 chr15 38683672 38683740 -62696781 + Alu SINE Alu 245 312 0 2226 94 10 3 chr15 38683742 38684041 -62696480 - AluSq SINE Alu -12 301 1 248 234 138 56 chr15 38684060 38684186 -62696335 + L1ME4a LINE L1 5872 5986 -135 1788 133 10 40 chr15 38684186 38684486 -62696035 + AluSx SINE Alu 1 291 -21 248 234 138 56 chr15 38684486 38684590 -62695931 + L1ME4a LINE L1 5986 6121 0 2063 197 16 52 chr15 38684613 38684828 -62695693 + L1MB3 LINE L1 4832 5053 -1130 2391 84 0 3 chr15 38684828 38685124 -62695397 + AluSx SINE Alu 1 295 -17 2063 197 16 52 chr15 38685124 38685194 -62695327 + L1MB3 LINE L1 5053 5124 -1059 180 0 0 0 chr15 38685194 38685214 -62695307 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2063 197 16 52 chr15 38685214 38685250 -62695271 + L1MB3 LINE L1 5124 5160 -1023 987 115 8 0 chr15 38685250 38685380 -62695141 + FLAM_A SINE Alu 1 131 -2 2063 197 16 52 chr15 38685380 38685683 -62694838 + L1MB3 LINE L1 5160 5472 -711 2278 98 0 0 chr15 38685683 38685980 -62694541 + AluSx SINE Alu 1 297 -15 2212 90 3 27 chr15 38685989 38686288 -62694233 + AluSq SINE Alu 2 293 -20 2063 197 16 52 chr15 38686288 38686457 -62694064 + L1MB3 LINE L1 5480 5603 -580 1762 164 26 7 chr15 38686460 38686764 -62693757 + AluJb SINE Alu 1 310 -2 269 41 41 41 chr15 38686776 38686825 -62693696 - AluY SINE Alu -1 301 253 1845 186 31 0 chr15 38686854 38687204 -62693317 + L1MB3 LINE L1 5823 6183 0 1632 253 75 65 chr15 38687419 38688003 -62692518 + MLT1E LTR MaLR 3 592 -1 22 0 0 0 chr15 38688130 38688152 -62692369 + AT_rich Low_complexity Low_complexity 1 22 0 1945 154 0 7 chr15 38688624 38688923 -62691598 - AluJb SINE Alu -15 297 1 1554 189 60 0 chr15 38689025 38689306 -62691215 - AluJb SINE Alu -14 298 1 386 236 122 54 chr15 38689505 38689653 -62690868 + MIR SINE MIR 91 248 -14 995 202 70 11 chr15 38689656 38689928 -62690593 + AluSp SINE Alu 1 288 -15 301 262 110 41 chr15 38690045 38690190 -62690331 + MIR SINE MIR 94 248 -14 2338 92 3 0 chr15 38690193 38690486 -62690035 + AluSp SINE Alu 1 294 -19 4453 121 28 40 chr15 38690779 38691189 -62689332 + L1MA4 LINE L1 4958 5371 -929 880 163 0 15 chr15 38691189 38691324 -62689197 + FLAM_C SINE Alu 1 133 0 4453 121 28 40 chr15 38691324 38691972 -62688549 + L1MA4 LINE L1 5371 6014 -286 375 196 43 0 chr15 38691979 38692071 -62688450 + L1MB3 LINE L1 6087 6182 -1 1619 174 10 49 chr15 38692078 38692383 -62688138 + AluJb SINE Alu 1 293 -19 1688 188 18 0 chr15 38692485 38692767 -62687754 + AluJo SINE Alu 6 292 -20 781 246 18 26 chr15 38692971 38693199 -62687322 + L1ME3A LINE L1 5565 5790 -380 761 161 244 0 chr15 38693221 38693389 -62687132 - MLT1D LTR MaLR -6 499 291 879 189 17 23 chr15 38693414 38693589 -62686932 - FAM SINE Alu -11 174 1 1382 198 10 54 chr15 38693591 38693905 -62686616 - MLT1D LTR MaLR -205 300 1 416 250 26 7 chr15 38693907 38694080 -62686441 + L1ME3A LINE L1 5801 5975 -189 555 176 69 29 chr15 38694174 38694303 -62686218 + FLAM_A SINE Alu 10 142 0 2339 95 6 16 chr15 38695050 38695365 -62685156 + AluSq SINE Alu 1 312 -1 519 207 76 138 chr15 38695489 38695607 -62684914 + MLT1H LTR MaLR 8 132 -417 813 187 0 0 chr15 38695607 38695730 -62684791 + FLAM_A SINE Alu 1 123 -10 519 207 76 138 chr15 38695730 38696066 -62684455 + MLT1H LTR MaLR 132 545 -4 1444 118 90 0 chr15 38696147 38696248 -62684273 + MER30 DNA MER1_type 1 92 -138 225 0 0 0 chr15 38696248 38696273 -62684248 + (CA)n Simple_repeat Simple_repeat 2 26 0 1444 118 90 0 chr15 38696273 38696382 -62684139 + MER30 DNA MER1_type 91 230 0 2221 85 0 39 chr15 38696711 38697016 -62683505 + AluSq SINE Alu 1 293 -20 2913 10 0 0 chr15 38697130 38697442 -62683079 + AluYb8 SINE Alu 1 312 -6 2531 48 3 0 chr15 38697644 38697936 -62682585 + AluY SINE Alu 1 293 -18 2310 102 0 3 chr15 38698268 38698562 -62681959 - AluSg SINE Alu -17 293 1 27 62 0 0 chr15 38698984 38699032 -62681489 + AT_rich Low_complexity Low_complexity 1 48 0 388 288 76 0 chr15 38699223 38699341 -62681180 + L2 LINE L2 3185 3311 -2 3290 144 39 17 chr15 38699354 38699890 -62680631 + MER44D DNA MER2_type 1 603 -2 1788 174 17 0 chr15 38699951 38700244 -62680277 + AluJo SINE Alu 1 298 -14 828 177 37 0 chr15 38700707 38700871 -62679650 - AluJb SINE Alu -5 307 138 276 173 0 0 chr15 38700971 38701023 -62679498 + Alu SINE Alu 257 308 0 2112 139 0 0 chr15 38701066 38701375 -62679146 - AluSc SINE Alu 0 309 1 190 313 80 54 chr15 38701644 38701756 -62678765 + MER5A DNA MER1_type 71 185 -4 1941 221 36 34 chr15 38701887 38702024 -62678497 - L1M4 LINE L1 -977 5169 5034 2446 73 0 0 chr15 38702024 38702326 -62678195 - AluY SINE Alu -9 302 1 1941 221 36 34 chr15 38702326 38702714 -62677807 - L1M4 LINE L1 -1112 5034 4643 204 175 25 0 chr15 38702716 38702756 -62677765 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1267 194 135 12 chr15 38702761 38703013 -62677508 - AluJo SINE Alu -18 284 2 273 156 31 47 chr15 38703014 38703078 -62677443 - L1M4 LINE L1 -1491 4655 4593 2058 79 12 0 chr15 38703078 38703332 -62677189 - AluSq SINE Alu -56 257 1 354 252 102 0 chr15 38703397 38703524 -62676997 - L1MC4a LINE L1 -1881 5927 5788 2153 155 3 23 chr15 38704265 38704614 -62675907 - MER2 DNA MER2_type -1 343 2 2523 69 3 0 chr15 38705982 38706285 -62674236 + AluSc SINE Alu 1 304 -5 2267 100 6 6 chr15 38707006 38707317 -62673204 - AluY SINE Alu 0 311 1 195 69 0 0 chr15 38707397 38707426 -62673095 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 1619 186 7 11 chr15 38707426 38707705 -62672816 - AluJo SINE Alu -32 280 3 2380 68 0 7 chr15 38708085 38708379 -62672142 - AluY SINE Alu -19 292 1 2267 65 0 71 chr15 38708598 38708920 -62671601 - AluSg SINE Alu -11 299 1 1102 289 179 22 chr15 38708946 38709061 -62671460 + L2 LINE L2 2346 2442 -871 2132 128 0 3 chr15 38709061 38709357 -62671164 - AluSx SINE Alu -17 295 1 1102 289 179 22 chr15 38709357 38710089 -62670432 + L2 LINE L2 2442 3311 -2 198 0 0 0 chr15 38710255 38710277 -62670244 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2089 121 0 0 chr15 38710280 38710562 -62669959 - AluSx SINE Alu -30 282 1 188 83 0 28 chr15 38710624 38710660 -62669861 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 11403 27 3 2 chr15 38710660 38712723 -62667798 - L1PA3 LINE L1 -24 6131 4066 1999 108 49 11 chr15 38712922 38713209 -62667312 - AluSx SINE Alu -10 302 5 2267 87 7 10 chr15 38713656 38713965 -62666556 + AluSq SINE Alu 4 311 -2 24 0 0 0 chr15 38714103 38714127 -62666394 + AT_rich Low_complexity Low_complexity 1 24 0 1813 127 38 4 chr15 38714260 38714527 -62665994 - AluSx SINE Alu -13 299 24 2374 86 0 10 chr15 38715188 38715490 -62665031 + AluSx SINE Alu 1 299 -13 742 307 113 35 chr15 38715899 38716435 -62664086 - L2 LINE L2 -55 3258 2684 2522 62 3 3 chr15 38716461 38716766 -62663755 - AluSp SINE Alu -6 307 3 1068 252 90 59 chr15 38718020 38718166 -62662355 + LTR33A LTR ERVL 33 173 -350 2302 101 0 0 chr15 38718166 38718464 -62662057 + AluSx SINE Alu 1 298 -14 1068 252 90 59 chr15 38718464 38718793 -62661728 + LTR33A LTR ERVL 173 523 0 220 253 0 40 chr15 38718799 38718874 -62661647 + A-rich Low_complexity Low_complexity 5 76 0 1845 121 59 38 chr15 38718909 38719198 -62661323 + AluSg SINE Alu 1 295 -15 552 101 0 0 chr15 38719223 38719292 -62661229 + AluS SINE Alu 1 69 -243 1904 116 0 63 chr15 38719658 38719961 -62660560 + AluSx SINE Alu 1 284 -28 1123 168 24 0 chr15 38719996 38720163 -62660358 + FAM SINE Alu 1 171 -4 426 277 106 67 chr15 38720169 38720914 -62659607 + L1ME4a LINE L1 5042 5752 -369 2527 57 0 3 chr15 38720914 38721214 -62659307 + AluY SINE Alu 1 299 -12 426 277 106 67 chr15 38721214 38721292 -62659229 + L1ME4a LINE L1 5752 5825 -296 2100 124 3 0 chr15 38721883 38722174 -62658347 - AluSx SINE Alu -20 292 1 9333 28 3 237 chr15 38722823 38724623 -62655898 + SVA Other Other 1 1378 -8 21 36 0 0 chr15 38725514 38725542 -62654979 + AT_rich Low_complexity Low_complexity 1 28 0 1830 142 0 0 chr15 38725552 38725820 -62654701 - AluSx SINE Alu -18 294 27 24 32 0 0 chr15 38726428 38726459 -62654062 + AT_rich Low_complexity Low_complexity 1 31 0 1705 119 4 0 chr15 38726521 38726748 -62653773 + AluSx SINE Alu 25 252 -60 268 215 47 9 chr15 38726941 38727048 -62653473 + (TA)n Simple_repeat Simple_repeat 1 111 0 898 145 0 43 chr15 38727423 38727561 -62652960 - FLAM_C SINE Alu 0 133 2 180 0 0 0 chr15 38727571 38727591 -62652930 + (TTA)n Simple_repeat Simple_repeat 3 22 0 6904 66 7 3 chr15 38727592 38728648 -62651873 - L1PA7 LINE L1 -36 6118 5060 5892 86 8 0 chr15 38728647 38729449 -62651072 + L1PA7 LINE L1 4252 5059 -1087 * 2089 128 27 0 chr15 38729756 38730052 -62650469 - AluSq SINE Alu -9 304 1 187 347 69 14 chr15 38730338 38730410 -62650111 - L3b LINE CR1 -24 1559 1484 192 310 97 18 chr15 38730416 38730529 -62649992 + MIR SINE MIR 61 182 -80 364 222 0 22 chr15 38730777 38730867 -62649654 - L1ME2 LINE L1 -1 6163 6076 5893 148 23 22 chr15 38730885 38731395 -62649126 - L1MC1 LINE L1 0 6333 5820 2248 121 0 6 chr15 38731395 38731708 -62648813 - AluSx SINE Alu -1 311 1 5893 148 23 22 chr15 38731708 38732207 -62648314 - L1MC1 LINE L1 -513 5820 5323 911 159 0 0 chr15 38732208 38732334 -62648187 - FLAM_C SINE Alu -6 127 2 1498 212 10 10 chr15 38732345 38732633 -62647888 - AluSx SINE Alu -13 289 2 1988 139 3 13 chr15 38732990 38733293 -62647228 - AluSx SINE Alu -12 300 1 25 0 0 0 chr15 38733527 38733552 -62646969 + AT_rich Low_complexity Low_complexity 1 25 0 225 0 0 0 chr15 38734728 38734753 -62645768 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1616 128 47 12 chr15 38734756 38735014 -62645507 - AluJo SINE Alu -30 282 16 594 186 17 17 chr15 38735024 38735142 -62645379 - MLT1F LTR MaLR -50 492 375 526 76 0 0 chr15 38737403 38737469 -62643052 + Alu SINE Alu 235 300 -12 1951 123 20 10 chr15 38737479 38737780 -62642741 + AluSq SINE Alu 1 304 -9 2038 111 35 3 chr15 38737833 38738121 -62642400 + AluSx SINE Alu 1 297 -15 842 158 8 15 chr15 38739537 38739670 -62640851 + FLAM_A SINE Alu 1 132 -1 2176 106 0 0 chr15 38739762 38740055 -62640466 + AluSx SINE Alu 1 293 -19 289 224 191 61 chr15 38740385 38740532 -62639989 - MIR SINE MIR -91 171 6 1890 148 30 10 chr15 38740999 38741302 -62639219 - AluJo SINE Alu -3 309 1 3357 193 40 9 chr15 38741361 38742014 -62638507 - L1MB5 LINE L1 0 6174 5502 514 271 136 66 chr15 38742036 38742267 -62638254 - L1M4c LINE L1 -6026 358 96 2162 108 0 33 chr15 38742267 38742573 -62637948 + AluSx SINE Alu 1 296 -16 514 271 136 66 chr15 38742573 38742673 -62637848 - L1M4c LINE L1 -6288 96 4 2205 104 0 0 chr15 38743702 38744006 -62636515 - AluSg1 SINE Alu 0 304 1 1721 171 14 10 chr15 38744024 38744316 -62636205 + AluSx SINE Alu 1 293 -19 2020 150 0 7 chr15 38744708 38745014 -62635507 + AluJb SINE Alu 1 304 -8 924 76 17 0 chr15 38745832 38745974 -62634547 + AluSg/x SINE Alu 164 307 0 23 33 0 0 chr15 38746941 38746971 -62633550 + AT_rich Low_complexity Low_complexity 1 30 0 1571 182 65 4 chr15 38746981 38747256 -62633265 + AluJo SINE Alu 1 292 -20 2048 124 0 10 chr15 38747370 38747669 -62632852 + AluSg SINE Alu 1 296 -14 2272 86 3 3 chr15 38748139 38748429 -62632092 + AluSq SINE Alu 4 293 -20 26 0 0 0 chr15 38748813 38748839 -62631682 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr15 38749910 38749939 -62630582 + AT_rich Low_complexity Low_complexity 1 29 0 333 0 0 0 chr15 38750086 38750123 -62630398 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1901 126 0 25 chr15 38750128 38750413 -62630108 - AluSq SINE Alu -35 278 1 672 231 8 0 chr15 38751618 38751739 -62628782 + FLAM_A SINE Alu 1 122 -11 2007 65 0 4 chr15 38752053 38752298 -62628223 + AluY SINE Alu 55 298 -13 238 319 30 52 chr15 38752350 38752485 -62628036 - L2 LINE L2 -241 3031 2900 1777 164 25 0 chr15 38752887 38753162 -62627359 + AluJb SINE Alu 1 282 -30 336 48 0 0 chr15 38753165 38753207 -62627314 + (TGGA)n Simple_repeat Simple_repeat 4 45 0 533 307 101 18 chr15 38753216 38753434 -62627087 - MIR SINE MIR -21 241 6 284 242 30 0 chr15 38753765 38753831 -62626690 - MIR SINE MIR -76 132 65 258 288 113 50 chr15 38753863 38753931 -62626590 - MIR SINE MIR 0 262 200 1891 148 0 24 chr15 38753931 38754229 -62626292 + AluSx SINE Alu 1 291 -21 258 288 113 50 chr15 38754229 38754400 -62626121 - MIR SINE MIR -62 200 8 1998 121 16 50 chr15 38754450 38754596 -62625925 + AluSx SINE Alu 1 150 -162 2419 97 0 0 chr15 38754596 38754896 -62625625 + AluSc SINE Alu 1 300 -9 1998 121 16 50 chr15 38754896 38755071 -62625450 + AluSx SINE Alu 150 311 -1 663 244 22 39 chr15 38756497 38756677 -62623844 - MER5B DNA MER1_type 0 178 2 1655 149 15 94 chr15 38757771 38758100 -62622421 + AluJo SINE Alu 1 303 -9 347 286 0 0 chr15 38758198 38758282 -62622239 + L1MB8 LINE L1 5582 5665 -2143 210 229 21 0 chr15 38758396 38758444 -62622077 + (CCG)n Simple_repeat Simple_repeat 3 51 0 184 298 65 83 chr15 38759395 38759563 -62620958 - MIR3 SINE MIR -30 178 14 692 187 0 0 chr15 38760084 38760191 -62620330 + FLAM_C SINE Alu 2 108 -35 198 0 0 0 chr15 38760209 38760231 -62620290 + (CA)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr15 38760251 38760272 -62620249 + AT_rich Low_complexity Low_complexity 1 21 0 1890 122 6 110 chr15 38760272 38760607 -62619914 + AluJo SINE Alu 2 301 -1 1741 136 48 18 chr15 38760868 38761140 -62619381 + AluJo SINE Alu 3 282 -30 2670 220 9 24 chr15 38761151 38761701 -62618820 + MLT1F LTR MaLR 1 542 0 245 215 18 0 chr15 38762136 38762212 -62618309 + L1MB8 LINE L1 6105 6182 -2 2360 80 0 7 chr15 38762366 38762666 -62617855 - AluY SINE Alu -13 298 1 268 250 161 24 chr15 38762672 38762840 -62617681 - L2 LINE L2 -12 3301 3111 2180 122 0 0 chr15 38763041 38763336 -62617185 - AluSx SINE Alu -17 295 1 2292 113 0 0 chr15 38763340 38763640 -62616881 - AluSg SINE Alu -10 300 1 2298 90 0 10 chr15 38764045 38764344 -62616177 - AluSq SINE Alu -17 296 1 2325 96 0 0 chr15 38764700 38764993 -62615528 - AluSx SINE Alu -19 293 1 1145 229 25 25 chr15 38765443 38765723 -62614798 - AluJo SINE Alu -31 281 2 2024 94 33 33 chr15 38766092 38766391 -62614130 - AluSq SINE Alu -14 299 1 2612 225 53 57 chr15 38766658 38767745 -62612776 + L1ME2 LINE L1 4971 6163 -1 1781 156 26 13 chr15 38767747 38768055 -62612466 + AluJo SINE Alu 1 312 0 280 278 45 15 chr15 38768198 38768331 -62612190 + L1MC4 LINE L1 7904 8040 -2 1595 194 0 33 chr15 38768339 38768643 -62611878 + AluJo SINE Alu 12 305 -7 216 0 0 0 chr15 38768925 38768949 -62611572 + (TG)n Simple_repeat Simple_repeat 1 24 0 1523 182 47 0 chr15 38768963 38769238 -62611283 - AluJo SINE Alu -24 288 1 21 0 0 0 chr15 38769238 38769259 -62611262 + AT_rich Low_complexity Low_complexity 1 21 0 204 118 29 0 chr15 38770032 38770066 -62610455 + (TG)n Simple_repeat Simple_repeat 1 35 0 1366 172 75 18 chr15 38770846 38771125 -62609396 - AluJo SINE Alu -13 299 5 449 281 154 4 chr15 38771148 38771415 -62609106 - L1ME4a LINE L1 -23 6098 5792 537 237 30 23 chr15 38771421 38771552 -62608969 + MIR SINE MIR 2 133 -129 1488 239 90 69 chr15 38771555 38771620 -62608901 - L1MDb LINE L1 -4752 1788 1726 714 154 14 98 chr15 38771620 38771649 -62608872 - FLAM_A SINE Alu -171 131 101 2101 125 0 3 chr15 38771649 38771944 -62608577 + AluSx SINE Alu 1 294 -18 714 154 14 98 chr15 38771944 38772057 -62608464 - FLAM_A SINE Alu -201 101 1 1488 239 90 69 chr15 38772057 38772407 -62608114 - L1MDb LINE L1 -4814 1726 1385 1579 176 7 53 chr15 38772407 38772708 -62607813 - AluJo SINE Alu -25 287 1 1488 239 90 69 chr15 38772708 38773184 -62607337 - L1MDb LINE L1 -5155 1385 908 317 325 77 34 chr15 38773256 38773465 -62607056 - L1MDb LINE L1 -5611 919 702 390 281 51 67 chr15 38773724 38773977 -62606544 - L1MDb LINE L1 -6192 348 100 2197 106 0 13 chr15 38774022 38774324 -62606197 - AluSx SINE Alu -14 298 1 967 136 57 17 chr15 38774330 38774507 -62606014 + AluSg/x SINE Alu 110 293 -17 360 356 50 32 chr15 38774610 38774891 -62605630 - L1 LINE L1 -3135 3011 2726 889 165 0 0 chr15 38774922 38775055 -62605466 + FLAM_C SINE Alu 1 133 0 2498 57 0 29 chr15 38776034 38776350 -62604171 + AluY SINE Alu 1 307 -4 1747 161 55 0 chr15 38776971 38777262 -62603259 + AluJo SINE Alu 1 307 -5 3910 110 17 15 chr15 38777627 38778153 -62602368 + MER1A DNA MER1_type 1 527 0 761 187 75 43 chr15 38778337 38778524 -62601997 - MIR SINE MIR 0 262 70 2202 99 3 10 chr15 38778854 38779156 -62601365 + AluSg SINE Alu 1 300 -10 508 308 7 7 chr15 38779263 38779406 -62601115 + MIR SINE MIR 1 143 -119 6969 183 55 30 chr15 38779409 38780902 -62599619 - MER52A LTR ERV1 0 1755 17 454 246 55 9 chr15 38780902 38781012 -62599509 + MIR SINE MIR 148 262 0 307 223 77 39 chr15 38781113 38781243 -62599278 + L1ME4a LINE L1 5718 5852 -269 451 212 129 24 chr15 38781288 38781458 -62599063 + L1ME4a LINE L1 5934 6121 0 652 256 86 48 chr15 38782041 38782377 -62598144 - L1MC4 LINE L1 -237 7805 7457 1014 151 44 0 chr15 38782456 38782615 -62597906 + AluJb SINE Alu 1 166 -146 1017 216 31 14 chr15 38782675 38782897 -62597624 - MIR SINE MIR 0 262 37 8761 40 8 225 chr15 38782917 38784687 -62595834 - SVA Other Other 0 1386 1 29 60 0 0 chr15 38784746 38784796 -62595725 + AT_rich Low_complexity Low_complexity 1 50 0 2199 110 0 0 chr15 38785470 38785760 -62594761 + AluSq SINE Alu 1 290 -23 1770 154 20 24 chr15 38786511 38786809 -62593712 + AluJb SINE Alu 1 297 -15 2037 130 3 10 chr15 38787579 38787880 -62592641 + AluSg SINE Alu 1 299 -11 2103 133 3 0 chr15 38787893 38788195 -62592326 + AluSx SINE Alu 1 303 -9 427 262 166 11 chr15 38788294 38788481 -62592040 - MIR SINE MIR -18 244 29 1747 158 28 3 chr15 38789194 38789479 -62591042 - AluJo SINE Alu -20 292 1 774 274 70 50 chr15 38789508 38789787 -62590734 - L2 LINE L2 -91 3222 2933 2357 86 0 13 chr15 38789787 38790088 -62590433 + AluSc SINE Alu 1 297 -12 774 274 70 50 chr15 38790088 38790166 -62590355 - L2 LINE L2 -380 2933 2858 1108 267 20 32 chr15 38790181 38790525 -62589996 - L2 LINE L2 -572 2742 2403 22 0 0 0 chr15 38790908 38790930 -62589591 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr15 38792523 38792565 -62587956 + AT_rich Low_complexity Low_complexity 1 42 0 381 171 83 72 chr15 38792687 38792880 -62587641 - Charlie7 DNA MER1_type -4 2608 2414 762 182 81 50 chr15 38792944 38792985 -62587536 + MER3 DNA MER1_type 1 39 -170 2303 92 0 0 chr15 38792985 38793280 -62587241 + AluY SINE Alu 1 295 -16 762 182 81 50 chr15 38793280 38793436 -62587085 + MER3 DNA MER1_type 39 204 -5 251 234 0 0 chr15 38793400 38793447 -62587074 - MER3 DNA MER1_type -121 88 42 * 372 290 37 9 chr15 38793452 38793559 -62586962 - MER5B DNA MER1_type -3 175 66 2451 100 0 0 chr15 38793834 38794143 -62586378 + AluSc SINE Alu 1 309 0 276 173 0 0 chr15 38794186 38794238 -62586283 - Alu SINE Alu 0 308 257 884 165 37 0 chr15 38794338 38794502 -62586019 + AluJb SINE Alu 138 307 -5 328 266 138 15 chr15 38794700 38794903 -62585618 + HAL1b LINE L1 494 721 -627 28 0 0 0 chr15 38796205 38796233 -62584288 + AT_rich Low_complexity Low_complexity 1 28 0 2616 43 0 0 chr15 38796274 38796576 -62583945 + AluY SINE Alu 1 302 -9 2605 49 0 0 chr15 38796751 38797056 -62583465 + AluY SINE Alu 1 305 -6 2154 126 12 27 chr15 38797112 38797297 -62583224 + MER6 DNA MER2_type 274 460 -405 2323 81 10 0 chr15 38797297 38797592 -62582929 + AluSp SINE Alu 1 298 -15 2154 126 12 27 chr15 38797592 38797740 -62582781 + MER6 DNA MER2_type 460 862 -3 3436 165 24 24 chr15 38797742 38798372 -62582149 + L1MB7 LINE L1 5443 6072 -112 1343 285 98 60 chr15 38798378 38798733 -62581788 - ERVL LTR ERVL -630 4678 4338 1979 141 14 10 chr15 38798733 38799030 -62581491 + AluJo SINE Alu 1 298 -14 1343 285 98 60 chr15 38799030 38799082 -62581439 - ERVL LTR ERVL -970 4338 4289 2358 101 0 0 chr15 38799082 38799388 -62581133 + AluSx SINE Alu 1 306 -6 1343 285 98 60 chr15 38799388 38799643 -62580878 - ERVL LTR ERVL -1019 4289 3678 672 203 160 0 chr15 38799683 38799870 -62580651 - L1ME2 LINE L1 -251 5913 5697 1651 150 4 8 chr15 38799870 38800137 -62580384 - AluJb SINE Alu -13 299 34 2007 159 156 17 chr15 38800152 38800574 -62579947 + L1MC3 LINE L1 7142 7622 -163 2243 101 3 10 chr15 38800588 38800896 -62579625 - AluSx SINE Alu -6 306 1 331 188 0 0 chr15 38800896 38800960 -62579561 - Alu SINE Alu 0 302 239 1598 153 4 0 chr15 38800908 38801149 -62579372 - AluJo SINE Alu -22 290 49 257 236 112 22 chr15 38801324 38801413 -62579108 + MER34 LTR ERV1 417 513 -29 213 65 0 0 chr15 38801527 38801558 -62578963 + (TA)n Simple_repeat Simple_repeat 2 32 0 1449 132 68 34 chr15 38801558 38801793 -62578728 - AluJo SINE Alu -21 291 49 1804 165 7 0 chr15 38802410 38802701 -62577820 - AluJb SINE Alu -15 297 5 2035 129 21 37 chr15 38802894 38803275 -62577246 - THE1C LTR MaLR 0 375 1 1127 205 46 63 chr15 38803551 38803702 -62576819 + MLT1D LTR MaLR 20 172 -333 2397 86 10 0 chr15 38803702 38804004 -62576517 - AluSg SINE Alu -5 305 1 1127 205 46 63 chr15 38804004 38804199 -62576322 + MLT1D LTR MaLR 172 360 -145 26 0 0 0 chr15 38804712 38804738 -62575783 + AT_rich Low_complexity Low_complexity 1 26 0 1647 154 20 50 chr15 38804738 38805037 -62575484 - AluJo SINE Alu -21 291 2 985 281 90 22 chr15 38805123 38805174 -62575347 + L1MC4 LINE L1 5343 5389 -2419 1936 145 13 35 chr15 38805174 38805492 -62575029 + AluSq SINE Alu 1 311 -2 985 281 90 22 chr15 38805492 38805931 -62574590 + L1MC4 LINE L1 5389 5866 -1942 22 0 0 0 chr15 38806400 38806422 -62574099 + AT_rich Low_complexity Low_complexity 1 22 0 220 306 0 0 chr15 38807525 38807574 -62572947 - L2 LINE L2 -15 3257 3209 444 245 188 78 chr15 38807602 38807814 -62572707 + L1MC4 LINE L1 7347 7534 -508 2141 137 0 3 chr15 38807814 38808127 -62572394 + AluSx SINE Alu 1 312 0 444 245 188 78 chr15 38808127 38808297 -62572224 + L1MC4 LINE L1 7534 7771 -271 28 0 0 0 chr15 38809310 38809338 -62571183 + AT_rich Low_complexity Low_complexity 1 28 0 197 273 0 0 chr15 38809453 38809497 -62571024 - L2 LINE L2 0 3272 3229 2278 102 7 0 chr15 38810330 38810633 -62569888 + AluSg SINE Alu 1 305 -5 23 0 0 0 chr15 38810640 38810663 -62569858 + AT_rich Low_complexity Low_complexity 1 23 0 2227 128 0 3 chr15 38810667 38810979 -62569542 + AluSx SINE Alu 1 311 -1 204 40 0 0 chr15 38810980 38811005 -62569516 + (CA)n Simple_repeat Simple_repeat 2 26 0 273 303 160 6 chr15 38811373 38811548 -62568973 + LTR16B LTR ERVL 263 464 0 21 82 0 0 chr15 38811941 38811990 -62568531 + AT_rich Low_complexity Low_complexity 1 49 0 245 188 29 0 chr15 38812156 38812225 -62568296 + (CATA)n Simple_repeat Simple_repeat 3 73 0 478 265 122 0 chr15 38812842 38812989 -62567532 - MIR3 SINE MIR -14 194 30 2226 74 0 44 chr15 38813606 38813929 -62566592 + AluSg SINE Alu 1 310 0 22 0 0 0 chr15 38814209 38814231 -62566290 + AT_rich Low_complexity Low_complexity 1 22 0 1010 123 0 0 chr15 38815096 38815226 -62565295 + AluSg SINE Alu 1 130 -180 2174 98 0 33 chr15 38815229 38815535 -62564986 + AluSg SINE Alu 1 296 -14 24 0 0 0 chr15 38815535 38815559 -62564962 + AT_rich Low_complexity Low_complexity 1 24 0 1815 156 6 19 chr15 38815687 38815823 -62564698 + AluSx SINE Alu 1 137 -175 2070 104 11 4 chr15 38815823 38816159 -62564362 + AluSg SINE Alu 1 338 0 1815 156 6 19 chr15 38816159 38816335 -62564186 + AluSx SINE Alu 137 310 -2 263 211 9 140 chr15 38816426 38816480 -62564041 + L1ME LINE L1 5563 5596 -525 2157 102 40 7 chr15 38816480 38816783 -62563738 + AluSp SINE Alu 1 313 0 263 211 9 140 chr15 38816783 38816842 -62563679 + L1ME LINE L1 5596 5661 -460 3258 24 5 0 chr15 38817274 38817693 -62562828 - L1P LINE L1 -772 5374 4954 2260 11 0 11 chr15 38817693 38817954 -62562567 + L1PA2 LINE L1 5889 6148 -7 446 114 14 0 chr15 38818793 38818863 -62561658 - L1PA10 LINE L1 0 6168 6098 2138 143 0 6 chr15 38818931 38819245 -62561276 + AluSx SINE Alu 1 312 0 277 190 17 17 chr15 38819824 38819882 -62560639 + MIR3 SINE MIR 119 176 -32 2155 91 53 0 chr15 38820192 38820477 -62560044 + AluSx SINE Alu 1 300 -12 57 103 0 0 chr15 38820776 38820980 -62559541 + AT_rich Low_complexity Low_complexity 1 204 0 355 137 8 145 chr15 38821032 38821156 -62559365 + L1MB3 LINE L1 4972 5078 -1068 * 5534 43 0 0 chr15 38821155 38821867 -62558654 - L1PA5 LINE L1 -1605 4541 3830 6983 47 13 10 chr15 38821869 38823470 -62557051 + L1PA5 LINE L1 4546 6154 0 4110 142 35 13 chr15 38823481 38824411 -62556110 + L1MB3 LINE L1 5071 6019 -164 22 35 0 0 chr15 38824412 38824441 -62556080 + AT_rich Low_complexity Low_complexity 1 29 0 1741 157 23 30 chr15 38825229 38825529 -62554992 - AluJb SINE Alu -13 299 2 22 35 0 0 chr15 38826183 38826212 -62554309 + AT_rich Low_complexity Low_complexity 1 29 0 2307 97 0 13 chr15 38826394 38826703 -62553818 + AluSg SINE Alu 1 305 -5 1774 169 0 27 chr15 38826960 38827255 -62553266 + AluJb SINE Alu 1 287 -25 240 59 0 0 chr15 38827255 38827289 -62553232 + (CA)n Simple_repeat Simple_repeat 2 35 0 344 343 74 29 chr15 38827666 38827908 -62552613 - L2 LINE L2 -1291 2023 1771 197 193 193 0 chr15 38829162 38829219 -62551302 + MIR SINE MIR 1 68 -194 266 148 19 74 chr15 38829251 38829305 -62551216 + MIR SINE MIR 55 105 -157 422 312 8 0 chr15 38829568 38829693 -62550828 + MIR SINE MIR 127 252 -10 2064 88 81 4 chr15 38829712 38829985 -62550536 + AluSc SINE Alu 1 294 -15 234 265 193 12 chr15 38830947 38831030 -62549491 - L2 LINE L2 -52 3220 3123 2205 51 0 0 chr15 38831077 38831330 -62549191 + AluY SINE Alu 13 265 -46 429 235 8 0 chr15 38831624 38831732 -62548789 + MER5A DNA MER1_type 1 109 -80 1611 175 12 0 chr15 38831744 38831996 -62548525 - AluJo SINE Alu -21 291 37 5753 106 14 23 chr15 38832056 38832211 -62548310 + L1PA13 LINE L1 5162 5317 -846 2095 112 0 45 chr15 38832211 38832525 -62547996 + AluSx SINE Alu 1 300 -12 5753 106 14 23 chr15 38832525 38833374 -62547147 + L1PA13 LINE L1 5317 6161 -2 806 307 82 39 chr15 38833844 38834258 -62546263 + L3 LINE CR1 996 1427 -150 332 330 194 10 chr15 38834635 38834841 -62545680 + MIR SINE MIR 6 249 -13 1293 186 0 14 chr15 38835377 38835598 -62544923 - AluJo SINE Alu -13 299 82 900 107 0 0 chr15 38835611 38835733 -62544788 - AluSc SINE Alu -12 297 176 428 179 0 0 chr15 38835753 38835820 -62544701 + MER2 DNA MER2_type 279 345 0 1856 146 7 10 chr15 38835851 38836153 -62544368 + AluJo SINE Alu 1 301 -11 2091 117 7 0 chr15 38836954 38837237 -62543284 + AluSx SINE Alu 9 293 -19 2169 117 0 3 chr15 38837416 38837724 -62542797 + AluSx SINE Alu 1 307 -5 212 0 36 0 chr15 38838483 38838511 -62542010 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2237 107 0 3 chr15 38839695 38839993 -62540528 - AluSx SINE Alu -15 297 1 200 194 0 0 chr15 38840593 38840629 -62539892 + (CATA)n Simple_repeat Simple_repeat 2 37 0 759 164 8 22 chr15 38841014 38841148 -62539373 - FLAM_C SINE Alu -1 132 1 537 243 99 50 chr15 38842458 38842639 -62537882 - MIR SINE MIR -70 192 3 564 251 5 36 chr15 38842947 38843142 -62537379 + L1PBa LINE L1 6 194 -6669 905 113 38 13 chr15 38843142 38843301 -62537220 + L1PB1 LINE L1 5627 5789 -362 315 191 0 0 chr15 38843304 38843367 -62537154 + (CA)n Simple_repeat Simple_repeat 2 64 0 2332 119 0 22 chr15 38843372 38843743 -62536778 + L1PB1 LINE L1 5781 6143 -8 1593 174 26 3 chr15 38843751 38844062 -62536459 + L1MB2 LINE L1 5465 5782 -401 195 129 0 0 chr15 38844097 38844128 -62536393 + (TA)n Simple_repeat Simple_repeat 1 31 0 1336 151 57 8 chr15 38844128 38844393 -62536128 + L1MB2 LINE L1 5892 6169 -2 620 157 167 0 chr15 38844413 38844521 -62536000 - FRAM SINE Alu -30 146 21 795 167 0 0 chr15 38845306 38845432 -62535089 + FLAM_C SINE Alu 2 127 -6 2166 98 3 35 chr15 38845502 38845818 -62534703 - AluSp SINE Alu -6 307 2 377 329 148 30 chr15 38845938 38846303 -62534218 + L3 LINE CR1 1087 1494 -83 2254 103 24 0 chr15 38846361 38846653 -62533868 - AluSx SINE Alu -13 299 1 22 0 0 0 chr15 38846796 38846818 -62533703 + AT_rich Low_complexity Low_complexity 1 22 0 342 306 16 0 chr15 38847019 38847143 -62533378 + T-rich Low_complexity Low_complexity 1 126 0 2239 103 60 0 chr15 38847144 38847492 -62533029 - L1PA11 LINE L1 -2 6172 5804 5544 141 24 4 chr15 38847492 38848512 -62532009 - L1M LINE L1 -743 5403 4379 899 153 0 0 chr15 38848570 38848707 -62531814 - FLAM_C SINE Alu -6 137 1 356 257 44 81 chr15 38848854 38848990 -62531531 + MIR SINE MIR 132 262 0 22 80 0 0 chr15 38849467 38849517 -62531004 + AT_rich Low_complexity Low_complexity 1 50 0 223 186 0 0 chr15 38849855 38849898 -62530623 + A-rich Low_complexity Low_complexity 1 43 0 1868 176 10 3 chr15 38849968 38850270 -62530251 - AluJb SINE Alu -8 304 1 632 211 55 62 chr15 38850316 38850396 -62530125 - MER113 DNA MER1_type? -98 423 344 1853 114 0 8 chr15 38850396 38850661 -62529860 - AluSx SINE Alu 0 312 44 632 211 55 62 chr15 38850661 38850836 -62529685 - MER113 DNA MER1_type? -177 344 170 195 243 111 97 chr15 38850888 38851032 -62529489 + MIR SINE MIR 61 206 -56 2303 75 10 0 chr15 38851065 38851358 -62529163 - AluY SINE Alu -15 296 1 219 296 93 43 chr15 38851403 38851565 -62528956 - MIR SINE MIR -70 192 23 234 0 0 0 chr15 38852032 38852058 -62528463 + (A)n Simple_repeat Simple_repeat 1 26 0 1295 161 56 84 chr15 38853104 38853427 -62527094 + L1MB2 LINE L1 5858 6171 0 251 370 0 0 chr15 38853430 38853503 -62527018 - MIR SINE MIR -102 106 34 657 164 20 53 chr15 38853555 38853707 -62526814 + L1M4 LINE L1 5371 5517 -667 271 157 20 20 chr15 38853720 38853771 -62526750 + L1M4 LINE L1 4283 4333 -1813 895 165 183 0 chr15 38853771 38853935 -62526586 - AluJb SINE Alu -118 194 1 267 151 0 0 chr15 38853978 38854031 -62526490 + L1M4 LINE L1 3829 3881 -2265 250 128 0 0 chr15 38854035 38854074 -62526447 - L1M4 LINE L1 -1888 4258 4220 668 114 0 0 chr15 38854076 38854164 -62526357 - AluJ/FLAM SINE Alu -214 98 11 318 106 0 0 chr15 38854190 38854237 -62526284 - Tigger2 DNA MER2_type -2480 238 192 1827 211 36 3 chr15 38854237 38854621 -62525900 - L1M4 LINE L1 -1921 4225 3829 1995 141 40 0 chr15 38854664 38854962 -62525559 + AluSx SINE Alu 1 310 -2 631 268 73 29 chr15 38854992 38855374 -62525147 - L1MC4 LINE L1 -650 7392 7000 535 249 189 61 chr15 38855423 38855720 -62524801 - L1MC4 LINE L1 -967 7075 6741 2019 113 39 3 chr15 38856221 38856504 -62524017 - AluSx SINE Alu -19 293 1 1386 25 0 13 chr15 38857221 38857380 -62523141 - L1PA2 LINE L1 -1 6154 5998 2458 77 3 0 chr15 38857401 38857698 -62522823 - AluSp SINE Alu -15 298 1 279 0 0 0 chr15 38857740 38857771 -62522750 + (TCTCCC)n Simple_repeat Simple_repeat 3 33 0 6487 69 46 24 chr15 38857779 38859443 -62521078 + SVA Other Other 50 1380 -6 233 29 29 0 chr15 38859449 38859483 -62521038 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 953 206 0 6 chr15 38860469 38860634 -62519887 + AluJo SINE Alu 1 164 -148 817 152 8 24 chr15 38860970 38861095 -62519426 + FLAM_C SINE Alu 3 125 -18 21 57 0 0 chr15 38861101 38861136 -62519385 + AT_rich Low_complexity Low_complexity 1 35 0 631 266 141 43 chr15 38861143 38861281 -62519240 + HAL1b LINE L1 214 337 -1011 2318 63 0 11 chr15 38861281 38861594 -62518927 + AluY SINE Alu 1 310 0 631 266 141 43 chr15 38861594 38861822 -62518699 + HAL1b LINE L1 337 617 -731 1481 235 59 6 chr15 38861823 38862146 -62518375 - MER58B DNA MER1_type 0 341 2 4120 145 27 33 chr15 38862156 38862456 -62518065 - L1MC2 LINE L1 -350 5994 5694 2120 118 14 0 chr15 38862456 38862744 -62517777 + AluSx SINE Alu 1 292 -20 4120 145 27 33 chr15 38862744 38862920 -62517601 - L1MC2 LINE L1 -650 5694 5518 2223 116 7 0 chr15 38862920 38863230 -62517291 + AluSp SINE Alu 1 312 -1 4120 145 27 33 chr15 38863230 38863567 -62516954 - L1MC2 LINE L1 -826 5518 5186 523 253 21 27 chr15 38863562 38863748 -62516773 + L1ME LINE L1 5598 5782 -339 * 25 83 0 0 chr15 38863789 38863849 -62516672 + AT_rich Low_complexity Low_complexity 1 60 0 247 340 40 10 chr15 38864306 38864406 -62516115 + L3 LINE CR1 1465 1567 -10 263 361 8 0 chr15 38864555 38864674 -62515847 - MARNA DNA Mariner -345 241 122 486 256 58 16 chr15 38864919 38865040 -62515481 + L2 LINE L2 3187 3312 -1 2043 108 7 36 chr15 38865160 38865465 -62515056 - AluSx SINE Alu -16 296 1 2158 101 0 7 chr15 38865544 38865856 -62514665 + AluSp SINE Alu 1 310 0 884 159 43 37 chr15 38865937 38866100 -62514421 - MER20 DNA MER1_type -1 218 55 2207 95 7 0 chr15 38866241 38866535 -62513986 - AluSg1 SINE Alu -13 296 1 785 225 45 27 chr15 38866873 38867095 -62513426 + MER46C DNA MER2_type 1 226 -112 21 71 0 0 chr15 38867282 38867324 -62513197 + AT_rich Low_complexity Low_complexity 1 42 0 2037 104 0 112 chr15 38867384 38867722 -62512799 + AluSx SINE Alu 1 300 -2 657 209 31 19 chr15 38868400 38868650 -62511871 + L1MC4a LINE L1 5078 5504 -662 818 156 78 13 chr15 38868665 38868819 -62511702 + FAM SINE Alu 1 46 -3 2476 66 0 0 chr15 38868907 38869208 -62511313 + AluY SINE Alu 1 301 -10 626 239 233 21 chr15 38869403 38869734 -62510787 + L1MC4a LINE L1 5548 5948 -1860 236 285 85 0 chr15 38870050 38870152 -62510369 + L1MC/D LINE L1 5682 5790 -416 22 80 0 0 chr15 38870209 38870259 -62510262 + AT_rich Low_complexity Low_complexity 1 50 0 948 155 0 0 chr15 38870273 38870415 -62510106 - AluSp/q SINE Alu -7 306 165 2299 95 0 0 chr15 38870673 38870958 -62509563 + AluSx SINE Alu 11 295 -17 2232 87 0 11 chr15 38870994 38871280 -62509241 + AluY SINE Alu 1 283 -28 198 0 0 0 chr15 38871284 38871306 -62509215 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 580 138 100 92 chr15 38871391 38871521 -62509000 - FLAM_A SINE Alu -2 131 1 1616 203 70 10 chr15 38871525 38871924 -62508597 + L1MC4a LINE L1 7372 7794 -14 38 51 0 0 chr15 38872192 38872251 -62508270 + AT_rich Low_complexity Low_complexity 1 59 0 475 266 7 52 chr15 38872534 38872688 -62507833 - MIR3 SINE MIR -52 156 10 2344 97 6 0 chr15 38872710 38873021 -62507500 - AluSp SINE Alu 0 313 1 752 126 200 0 chr15 38873106 38873241 -62507280 + MER46A DNA MER2_type 73 234 -2 2020 93 114 0 chr15 38873440 38873720 -62506801 + AluSx SINE Alu 1 312 0 936 185 12 0 chr15 38873720 38873882 -62506639 + AluSg/x SINE Alu 134 297 -15 319 246 114 48 chr15 38874104 38874271 -62506250 + L2 LINE L2 3129 3306 -7 2410 79 0 0 chr15 38874344 38874635 -62505886 - AluSc SINE Alu -18 291 1 1751 154 9 38 chr15 38875284 38875602 -62504919 + AluJb SINE Alu 3 311 -1 271 273 130 39 chr15 38875608 38875762 -62504759 - L3 LINE CR1 -205 1372 1205 2061 96 18 11 chr15 38875938 38876248 -62504273 + AluSx SINE Alu 6 312 0 224 140 0 53 chr15 38876262 38876319 -62504202 + (T)n Simple_repeat Simple_repeat 1 54 0 566 229 294 14 chr15 38876361 38876654 -62503867 - L3 LINE CR1 -603 974 600 15973 125 32 6 chr15 38877639 38877950 -62502571 - Tigger1 DNA MER2_type 0 2418 2117 2165 102 41 0 chr15 38877950 38878245 -62502276 - AluSx SINE Alu -5 307 1 15973 125 32 6 chr15 38878245 38880289 -62500232 - Tigger1 DNA MER2_type -301 2117 1 2131 104 45 0 chr15 38880840 38881127 -62499394 + AluSx SINE Alu 3 302 -10 651 210 35 21 chr15 38881232 38881375 -62499146 + L1ME1 LINE L1 6016 6160 -6 210 37 0 0 chr15 38881439 38881466 -62499055 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 283 310 70 0 chr15 38881478 38881578 -62498943 - L2 LINE L2 -44 3228 3122 2399 82 0 0 chr15 38881664 38881958 -62498563 - AluY SINE Alu -17 294 1 363 269 42 71 chr15 38882274 38882338 -62498183 - L2 LINE L2 0 3313 3249 2389 70 3 0 chr15 38882338 38882625 -62497896 + AluSc SINE Alu 1 288 -21 363 269 42 71 chr15 38882625 38882772 -62497749 - L2 LINE L2 -64 3249 3108 944 261 133 25 chr15 38882834 38883202 -62497319 - L2 LINE L2 -338 2976 2569 409 298 25 97 chr15 38883255 38883331 -62497190 + L2 LINE L2 2351 2431 -883 1645 149 0 8 chr15 38883331 38883468 -62497053 + AluSx SINE Alu 1 137 -175 2237 104 3 10 chr15 38883468 38883777 -62496744 + AluSx SINE Alu 1 307 -5 1645 149 0 8 chr15 38883777 38883887 -62496634 + AluSx SINE Alu 137 246 -66 409 298 25 97 chr15 38883887 38884129 -62496392 + L2 LINE L2 2431 2646 -668 * 682 234 54 22 chr15 38884125 38884309 -62496212 - L2 LINE L2 -977 2337 2148 1949 160 3 0 chr15 38884671 38884959 -62495562 + AluSx SINE Alu 1 289 -23 1138 182 11 5 chr15 38884971 38885158 -62495363 + AluJb SINE Alu 105 292 -20 411 195 45 46 chr15 38885221 38885333 -62495188 + MER5A DNA MER1_type 2 102 -76 1855 94 3 94 chr15 38886524 38886833 -62493688 + AluSq SINE Alu 23 303 -10 295 266 154 30 chr15 38888345 38888514 -62492007 + L1MC4a LINE L1 5716 5905 -1903 26 64 0 0 chr15 38888640 38888687 -62491834 + AT_rich Low_complexity Low_complexity 1 47 0 267 246 80 125 chr15 38888833 38889097 -62491424 + MER112 DNA MER1_type 8 259 -1 2348 103 3 3 chr15 38889223 38889534 -62490987 + AluSq SINE Alu 1 311 -2 356 264 31 78 chr15 38889620 38889749 -62490772 - MIR SINE MIR -84 178 56 780 120 51 17 chr15 38889754 38889871 -62490650 + FLAM_C SINE Alu 7 127 -16 2289 98 3 0 chr15 38890011 38890307 -62490214 - AluSp SINE Alu -16 297 1 3883 129 21 20 chr15 38890329 38890939 -62489582 + L1MB3 LINE L1 5572 6182 -1 2338 97 0 0 chr15 38890947 38891246 -62489275 + AluSx SINE Alu 1 299 -13 352 333 53 47 chr15 38891261 38891316 -62489205 + L1ME LINE L1 4931 4984 -1162 2453 73 0 3 chr15 38891316 38891617 -62488904 - AluSg SINE Alu -10 300 1 352 333 53 47 chr15 38891617 38891686 -62488835 + L1ME LINE L1 4984 5051 -1095 1903 148 3 3 chr15 38891686 38891976 -62488545 - AluJb SINE Alu -22 290 1 352 333 53 47 chr15 38891976 38892171 -62488350 + L1ME LINE L1 5051 5253 -893 2000 152 0 0 chr15 38892185 38892487 -62488034 + AluJb SINE Alu 1 302 -10 583 281 106 64 chr15 38892491 38892796 -62487725 + L1ME LINE L1 5298 5634 -487 2409 82 0 3 chr15 38892796 38893100 -62487421 + AluSg1 SINE Alu 1 303 -6 583 281 106 64 chr15 38893100 38893296 -62487225 + L1ME LINE L1 5634 5820 -301 245 279 59 15 chr15 38893296 38893364 -62487157 + Charlie1 DNA MER1_type 20 90 -2671 964 173 28 0 chr15 38893365 38893544 -62486977 + AluJb SINE Alu 118 301 -11 3057 156 85 60 chr15 38893605 38894324 -62486197 + Charlie1 DNA MER1_type 1421 2157 -604 970 51 80 43 chr15 38894324 38894462 -62486059 + AluSg1 SINE Alu 1 143 -166 1721 177 105 47 chr15 38894490 38894615 -62485906 + Charlie1 DNA MER1_type 2156 2272 -489 2251 62 25 68 chr15 38894615 38894767 -62485754 + AluSg SINE Alu 1 133 -177 2392 63 3 0 chr15 38894767 38895054 -62485467 + AluY SINE Alu 7 294 -17 2251 62 25 68 chr15 38895054 38895225 -62485296 + AluSg SINE Alu 133 310 0 1721 177 105 47 chr15 38895225 38895243 -62485278 + Charlie1 DNA MER1_type 2272 2288 -473 2104 67 7 77 chr15 38895243 38895576 -62484945 + AluSq SINE Alu 6 317 0 1721 177 105 47 chr15 38895576 38895696 -62484825 + Charlie1 DNA MER1_type 2288 2400 -361 2655 45 0 0 chr15 38895696 38896007 -62484514 + AluY SINE Alu 1 311 0 1721 177 105 47 chr15 38896007 38896208 -62484313 + Charlie1 DNA MER1_type 2400 2650 -111 1116 98 0 52 chr15 38896208 38896381 -62484140 - AluSg/x SINE Alu -4 308 145 359 204 68 58 chr15 38896629 38896732 -62483789 + MER5B DNA MER1_type 5 108 -70 2282 91 0 0 chr15 38896735 38897033 -62483488 + AluY SINE Alu 14 311 0 1925 164 7 0 chr15 38897052 38897362 -62483159 + AluSx SINE Alu 1 312 0 243 61 0 0 chr15 38897407 38897440 -62483081 + (T)n Simple_repeat Simple_repeat 1 33 0 206 259 0 19 chr15 38898314 38898368 -62482153 + MER5B DNA MER1_type 126 178 0 1063 176 101 17 chr15 38898463 38898701 -62481820 - AluJo SINE Alu -19 293 36 1593 246 80 26 chr15 38898960 38899386 -62481135 - LTR16A LTR ERVL -1 449 1 775 59 0 126 chr15 38899448 38899567 -62480954 + AluSc SINE Alu 2 105 -204 2185 96 0 11 chr15 38899581 38899861 -62480660 + AluSc SINE Alu 2 278 -31 197 33 33 0 chr15 38899864 38899894 -62480627 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 280 336 129 0 chr15 38899943 38900083 -62480438 + MIR SINE MIR 49 206 -56 424 270 72 20 chr15 38900710 38900862 -62479659 - MIR SINE MIR -63 199 40 863 186 32 6 chr15 38901678 38901834 -62478687 + MER8 DNA MER2_type 1 160 -79 21 36 0 0 chr15 38901834 38901862 -62478659 + AT_rich Low_complexity Low_complexity 1 28 0 1086 163 0 0 chr15 38901862 38902022 -62478499 - AluSg/x SINE Alu -27 283 124 2357 93 3 0 chr15 38902022 38902332 -62478189 - AluSx SINE Alu -1 311 1 641 111 22 0 chr15 38902333 38902423 -62478098 + MER8 DNA MER2_type 147 238 -1 2181 155 22 11 chr15 38902465 38902826 -62477695 - MLT1A1 LTR MaLR 0 365 1 447 189 0 0 chr15 38902852 38902926 -62477595 + AluJ/FLAM SINE Alu 3 76 -236 1611 152 14 22 chr15 38902860 38903136 -62477385 + AluJb SINE Alu 11 284 -28 1164 61 7 0 chr15 38903165 38903313 -62477208 - L1PA6 LINE L1 -4 6150 6002 1020 184 206 0 chr15 38903665 38903943 -62476578 + MER58B DNA MER1_type 1 340 -1 322 253 21 11 chr15 38903999 38904094 -62476427 + HAL1 LINE L1 2107 2202 -305 459 0 0 0 chr15 38905325 38905376 -62475145 + (TG)n Simple_repeat Simple_repeat 2 52 0 21 57 0 0 chr15 38905428 38905463 -62475058 + AT_rich Low_complexity Low_complexity 1 35 0 1168 83 0 0 chr15 38905674 38905818 -62474703 - AluSp/q SINE Alu -14 299 156 363 288 58 37 chr15 38905972 38906163 -62474358 - L1ME LINE L1 -328 5793 5599 603 204 0 0 chr15 38906172 38906280 -62474241 + AluY SINE Alu 2 109 -202 337 303 112 62 chr15 38906285 38906879 -62473642 - HAL1 LINE L1 -1205 1302 876 32 26 0 0 chr15 38907074 38907113 -62473408 + AT_rich Low_complexity Low_complexity 1 39 0 1443 189 79 0 chr15 38907153 38907418 -62473103 - AluJb SINE Alu -26 286 1 1986 150 0 10 chr15 38907428 38907728 -62472793 - AluSx SINE Alu -15 297 1 530 123 0 14 chr15 38907728 38907801 -62472720 + MER2 DNA MER2_type 274 345 0 1624 139 29 0 chr15 38907801 38908074 -62472447 - L1MB3 LINE L1 -82 6101 5821 1263 135 10 13 chr15 38908189 38908207 -62472314 + L1MB4 LINE L1 5649 5666 -494 3607 122 4 9 chr15 38908207 38908731 -62471790 + L1PA15 LINE L1 5642 6162 -3 1263 135 10 13 chr15 38908731 38908938 -62471583 + L1MB4 LINE L1 5666 5876 -284 295 136 0 0 chr15 38908941 38908985 -62471536 + L1MB4 LINE L1 6074 6117 -63 1673 170 0 14 chr15 38908987 38909270 -62471251 - AluJb SINE Alu -33 279 1 24 0 0 0 chr15 38909283 38909307 -62471214 + AT_rich Low_complexity Low_complexity 1 24 0 1845 113 0 19 chr15 38909309 38909602 -62470919 + AluSx SINE Alu 26 313 0 1904 134 11 14 chr15 38909732 38910009 -62470512 + AluSq SINE Alu 1 276 -37 4566 70 19 6 chr15 38910526 38911541 -62468980 + MER11A LTR ERVK 1 1261 -5 181 384 71 0 chr15 38912110 38912222 -62468299 + L2 LINE L2 2832 2951 -363 2014 116 0 11 chr15 38912389 38912674 -62467847 - AluSc SINE Alu -27 282 1 21 71 0 0 chr15 38912884 38912926 -62467595 + AT_rich Low_complexity Low_complexity 1 42 0 2565 68 0 0 chr15 38913023 38913330 -62467191 + AluY SINE Alu 1 307 -4 207 0 0 0 chr15 38913334 38913357 -62467164 + (TA)n Simple_repeat Simple_repeat 2 24 0 2507 74 0 3 chr15 38914088 38914397 -62466124 + AluY SINE Alu 1 308 -3 1439 93 121 31 chr15 38915342 38915599 -62464922 + AluJo SINE Alu 2 281 -31 287 228 81 73 chr15 38915725 38915848 -62464673 - MIR SINE MIR -50 212 89 26 0 0 0 chr15 38916179 38916205 -62464316 + GC_rich Low_complexity Low_complexity 1 26 0 1362 55 6 0 chr15 38918281 38918444 -62462077 - L1PA7 LINE L1 0 6154 5991 1261 191 31 24 chr15 38918518 38918806 -62461715 + L1ME1 LINE L1 5862 6151 -15 22 70 0 0 chr15 38918816 38918859 -62461662 + AT_rich Low_complexity Low_complexity 1 43 0 1935 137 0 40 chr15 38918859 38919159 -62461362 - AluSx SINE Alu -24 288 1 1735 170 17 14 chr15 38919167 38919455 -62461066 - AluJo SINE Alu -23 289 1 21 0 0 0 chr15 38920954 38920975 -62459546 + AT_rich Low_complexity Low_complexity 1 21 0 659 202 25 8 chr15 38921118 38921237 -62459284 - FLAM_A SINE Alu -12 121 1 7598 109 19 7 chr15 38921378 38922476 -62458045 + Tigger1 DNA MER2_type 1 1111 -1307 8550 100 38 25 chr15 38923673 38924564 -62455957 + Tigger1 DNA MER2_type 1105 1983 -435 2407 80 3 0 chr15 38924564 38924865 -62455656 - AluSg SINE Alu -8 302 1 8550 100 38 25 chr15 38924865 38925062 -62455459 + Tigger1 DNA MER2_type 1983 2176 -242 2072 136 7 3 chr15 38925062 38925372 -62455149 - AluJb SINE Alu -1 311 1 8550 100 38 25 chr15 38925372 38925466 -62455055 + Tigger1 DNA MER2_type 2176 2267 -151 2223 124 0 0 chr15 38925466 38925764 -62454757 - AluSx SINE Alu -14 298 1 8550 100 38 25 chr15 38925764 38925877 -62454644 + Tigger1 DNA MER2_type 2267 2418 0 791 44 0 0 chr15 38927432 38927522 -62452999 + AluY SINE Alu 208 297 -14 22 56 0 0 chr15 38927557 38927593 -62452928 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr15 38927604 38927625 -62452896 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr15 38928085 38928111 -62452410 + AT_rich Low_complexity Low_complexity 1 26 0 1944 151 0 10 chr15 38928190 38928489 -62452032 - AluY SINE Alu -15 296 1 201 208 146 0 chr15 38928805 38928853 -62451668 - L2 LINE L2 -2 3270 3216 2175 127 0 0 chr15 38929956 38930248 -62450273 - AluSx SINE Alu -20 292 1 420 304 41 35 chr15 38930751 38930922 -62449599 + MER5A DNA MER1_type 2 173 -16 1830 215 99 17 chr15 38930937 38931402 -62449119 - L1ME2 LINE L1 0 6164 5662 239 230 20 60 chr15 38931482 38931582 -62448939 + MIR SINE MIR 121 216 -46 423 289 16 16 chr15 38932375 38932496 -62448025 - MER5A DNA MER1_type -8 181 61 1392 103 5 5 chr15 38932521 38932706 -62447815 - AluSq SINE Alu -128 185 1 181 186 85 34 chr15 38932706 38932765 -62447756 + MER5A DNA MER1_type 127 188 -1 437 298 92 54 chr15 38933541 38933857 -62446664 - MLT1I LTR MaLR -14 395 68 1860 105 126 4 chr15 38934048 38934325 -62446196 + AluSx SINE Alu 2 312 0 219 36 0 0 chr15 38935369 38935397 -62445124 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1946 132 0 0 chr15 38935399 38935679 -62444842 - AluSx SINE Alu -32 280 1 404 251 123 39 chr15 38936000 38936203 -62444318 - L1ME LINE L1 -333 5788 5569 4113 118 11 62 chr15 38936253 38936643 -62443878 - L1MB3 LINE L1 -16 6167 5826 261 0 0 0 chr15 38936643 38936672 -62443849 + (TG)n Simple_repeat Simple_repeat 2 30 0 4113 118 11 62 chr15 38936672 38936975 -62443546 - L1MB3 LINE L1 -357 5826 5509 2110 129 0 7 chr15 38937930 38938239 -62442282 + AluJb SINE Alu 1 307 -5 1707 157 4 0 chr15 38938243 38938510 -62442011 + AluJo SINE Alu 45 312 0 198 0 0 0 chr15 38939020 38939042 -62441479 + (CA)n Simple_repeat Simple_repeat 2 23 0 180 313 45 0 chr15 38939253 38939320 -62441201 - MIR SINE MIR -71 191 122 616 234 61 61 chr15 38939723 38939937 -62440584 - L1ME1 LINE L1 -7 6159 5946 1017 194 23 0 chr15 38940165 38940340 -62440181 + MER5A DNA MER1_type 7 185 -4 1893 216 70 44 chr15 38940526 38940826 -62439695 - L1MC5 LINE L1 -36 7925 7634 252 86 0 0 chr15 38940826 38940861 -62439660 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 1893 216 70 44 chr15 38940861 38941219 -62439302 - L1MC5 LINE L1 -327 7634 7250 610 225 35 126 chr15 38941292 38941523 -62438998 + MER63A DNA MER1_type 1 210 0 938 195 40 71 chr15 38941524 38941878 -62438643 - L1MC4 LINE L1 -733 7228 6920 922 258 21 103 chr15 38941880 38942085 -62438436 - L1MC4 LINE L1 -1003 7039 6819 4625 82 22 8 chr15 38942085 38942706 -62437815 - L1MA2 LINE L1 0 6304 5675 922 258 21 103 chr15 38942706 38942957 -62437564 - L1MC4 LINE L1 -1223 6819 6536 2123 125 7 0 chr15 38942958 38943253 -62437268 - AluSx SINE Alu -15 297 1 1377 149 104 36 chr15 38943253 38943561 -62436960 - L1M2 LINE L1 -684 5607 5279 810 210 55 22 chr15 38944235 38944416 -62436105 + AluJo SINE Alu 92 278 -34 348 24 0 0 chr15 38944419 38944460 -62436061 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2174 116 43 6 chr15 38944726 38945053 -62435468 + MER44D DNA MER2_type 1 609 0 306 267 87 50 chr15 38945340 38945501 -62435020 - L1ME4a LINE L1 -19 6102 5936 209 33 33 0 chr15 38945517 38945547 -62434974 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2168 82 7 11 chr15 38945557 38945837 -62434684 - AluSq SINE Alu -34 279 1 535 246 93 43 chr15 38945837 38946007 -62434514 - L1ME4a LINE L1 -159 5962 5802 1999 130 20 3 chr15 38946007 38946308 -62434213 - AluSx SINE Alu -6 306 1 2244 111 0 0 chr15 38946309 38946607 -62433914 - AluSx SINE Alu -14 298 1 535 246 93 43 chr15 38946607 38946779 -62433742 - L1ME4a LINE L1 -318 5803 5601 310 173 307 47 chr15 38946821 38946948 -62433573 + L2 LINE L2 3154 3313 0 22 0 0 0 chr15 38947053 38947075 -62433446 + AT_rich Low_complexity Low_complexity 1 22 0 334 270 146 0 chr15 38947342 38947376 -62433145 - MER5A DNA MER1_type -29 160 132 2610 56 0 0 chr15 38947376 38947682 -62432839 + AluY SINE Alu 1 306 -5 334 270 146 0 chr15 38947682 38947784 -62432737 - MER5A DNA MER1_type -57 132 4 911 196 0 20 chr15 38948143 38948347 -62432174 - L1M1 LINE L1 -4364 3201 3002 1177 157 0 11 chr15 38948352 38948530 -62431991 - AluJo SINE Alu -131 181 6 8101 188 49 63 chr15 38948532 38949327 -62431194 - L1M1 LINE L1 -4526 3039 2235 2411 76 0 0 chr15 38949327 38949664 -62430857 + AluY SINE Alu 1 337 0 8101 188 49 63 chr15 38949664 38950430 -62430091 - L1M1 LINE L1 -5330 2235 1460 7090 56 17 15 chr15 38950430 38951993 -62428528 - SVA Other Other -723 1386 53 670 40 0 30 chr15 38951993 38952093 -62428428 + (GGGAGA)n Simple_repeat Simple_repeat 3 99 0 8101 188 49 63 chr15 38952093 38953166 -62427355 - L1M1 LINE L1 -6103 1462 16 391 175 75 12 chr15 38953283 38953363 -62427158 - MER21B LTR ERV1 -778 85 1 1814 189 14 14 chr15 38953586 38953941 -62426580 - MER4D LTR ERV1 0 903 549 1409 142 14 0 chr15 38953996 38954214 -62426307 - MER49 LTR ERV1 -653 270 50 1131 168 49 63 chr15 38954216 38954671 -62425850 - LOR1-int LTR ERV1 -2111 4021 2480 408 133 12 60 chr15 38954756 38954839 -62425682 - LOR1-int LTR ERV1 -2868 3730 3652 2165 114 0 3 chr15 38954929 38955227 -62425294 + AluSx SINE Alu 1 297 -15 333 243 39 10 chr15 38955228 38955331 -62425190 - LOR1-int LTR ERV1 -1831 3049 2944 2206 103 0 6 chr15 38955490 38955802 -62424719 - AluY SINE Alu -1 310 1 2217 182 59 66 chr15 38955871 38956763 -62423758 - LOR1-int LTR ERV1 -2944 3213 988 1579 124 117 8 chr15 38956821 38957086 -62423435 + AluSg1 SINE Alu 1 294 -15 390 349 103 27 chr15 38957138 38957468 -62423053 + L2 LINE L2 2585 2939 -375 1866 121 10 26 chr15 38957731 38958038 -62422483 - AluSx SINE Alu -7 305 4 686 268 22 6 chr15 38958441 38958624 -62421897 - MIR SINE MIR -56 206 21 836 229 12 12 chr15 38958638 38958808 -62421713 + MER5B DNA MER1_type 7 176 -2 732 186 84 24 chr15 38958822 38958989 -62421532 + MER5B DNA MER1_type 1 177 -1 29 0 0 0 chr15 38959028 38959057 -62421464 + AT_rich Low_complexity Low_complexity 1 29 0 12306 50 1 6 chr15 38959577 38961081 -62419440 + L1P LINE L1 9 1504 -4642 6817 31 5 5 chr15 38961087 38961891 -62418630 + L1PA3 LINE L1 5352 6155 0 252 143 0 0 chr15 38962150 38962192 -62418329 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 707 167 25 0 chr15 38962996 38963116 -62417405 + FLAM_A SINE Alu 3 125 -8 451 207 0 12 chr15 38963286 38963368 -62417153 + Tigger3(Golem) DNA MER2_type 4 84 -2945 * 516 209 136 0 chr15 38963367 38963477 -62417044 + Tigger3(Golem) DNA MER2_type 2904 3028 -1 2089 120 0 0 chr15 38964007 38964299 -62416222 - AluSx SINE Alu -20 292 1 183 80 0 0 chr15 38964396 38964421 -62416100 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1885 154 7 0 chr15 38965385 38965678 -62414843 - AluSx SINE Alu -17 295 1 2265 105 0 0 chr15 38966317 38966630 -62413891 - AluSq SINE Alu 0 313 1 884 258 246 25 chr15 38966772 38967672 -62412849 + L2 LINE L2 2200 3313 0 251 215 7 104 chr15 38969124 38969259 -62411262 + (CGGGG)n Simple_repeat Simple_repeat 3 124 0 339 244 38 0 chr15 38969505 38969636 -62410885 + G-rich Low_complexity Low_complexity 4 139 0 284 274 195 18 chr15 38970208 38970321 -62410200 + MIR SINE MIR 124 256 -6 26 0 0 0 chr15 38970535 38970561 -62409960 + AT_rich Low_complexity Low_complexity 1 26 0 2174 101 0 0 chr15 38971148 38971446 -62409075 - AluSx SINE Alu -14 298 1 321 298 67 19 chr15 38971701 38971805 -62408716 + L1MC4 LINE L1 6593 6701 -1341 195 189 19 0 chr15 38971881 38971934 -62408587 - MER5C DNA MER1_type -34 290 237 550 183 78 0 chr15 38971957 38972072 -62408449 - MER5C DNA MER1_type -200 124 1 884 197 112 5 chr15 38972282 38972470 -62408051 - MER58A DNA MER1_type -16 208 1 2279 105 0 3 chr15 38972671 38972984 -62407537 + AluSx SINE Alu 1 312 0 24 32 0 0 chr15 38974386 38974417 -62406104 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chr15 38975223 38975245 -62405276 + (T)n Simple_repeat Simple_repeat 1 22 0 1391 220 146 35 chr15 38975639 38976298 -62404223 - L1MC4 LINE L1 0 8042 7311 1940 97 76 0 chr15 38976954 38977242 -62403279 + AluSg SINE Alu 1 310 0 279 0 0 0 chr15 38977926 38977957 -62402564 + (T)n Simple_repeat Simple_repeat 1 31 0 2246 104 0 7 chr15 38980159 38980468 -62400053 - AluSx SINE Alu -5 307 1 1860 136 118 33 chr15 38980704 38981101 -62399420 + MSTB1 LTR MaLR 1 431 -1 2878 54 8 0 chr15 38981652 38982004 -62398517 + THE1A LTR MaLR 1 355 0 11999 86 13 3 chr15 38982004 38983567 -62396954 + THE1A-int LTR MaLR 1 1580 0 2426 97 41 0 chr15 38983567 38983908 -62396613 + THE1A LTR MaLR 1 355 0 539 325 77 43 chr15 38984282 38984698 -62395823 + L1ME LINE L1 5213 5661 -509 2228 87 0 3 chr15 38984698 38984996 -62395525 - AluY SINE Alu -14 297 1 539 325 77 43 chr15 38984996 38985153 -62395368 + L1ME LINE L1 5661 5811 -359 22 0 0 0 chr15 38985206 38985228 -62395293 + AT_rich Low_complexity Low_complexity 1 22 0 302 351 48 65 chr15 38986269 38986517 -62394004 + L2 LINE L2 2943 3186 -86 343 295 187 0 chr15 38986574 38986740 -62393781 + MIR SINE MIR 65 261 -1 208 247 274 0 chr15 38987395 38987468 -62393053 + MIR SINE MIR 84 176 -86 238 125 0 0 chr15 38987484 38987524 -62392997 - Alu SINE Alu -4 298 259 817 260 16 36 chr15 38987609 38987832 -62392689 + MIR SINE MIR 45 262 0 198 333 26 0 chr15 38987842 38987956 -62392565 + L2 LINE L2 1575 1691 -1623 295 345 55 40 chr15 38988087 38988490 -62392031 + L2 LINE L2 2002 2410 -904 797 163 20 20 chr15 38988655 38988802 -62391719 + MER5B DNA MER1_type 1 147 -31 257 105 53 0 chr15 38988802 38988840 -62391681 + MER57A LTR ERV1 294 333 -70 282 149 21 0 chr15 38988860 38988907 -62391614 - MER5B DNA MER1_type -129 49 2 263 282 84 64 chr15 38988916 38989118 -62391403 + L2 LINE L2 2654 2859 -455 183 327 0 0 chr15 38989145 38989197 -62391324 - L2 LINE L2 -661 2653 2602 563 178 107 71 chr15 38989208 38989279 -62391242 - MER5B DNA MER1_type -3 175 108 2191 106 0 0 chr15 38989279 38989581 -62390940 - AluSx SINE Alu -10 302 1 563 178 107 71 chr15 38989581 38989678 -62390843 - MER5B DNA MER1_type -70 108 1 202 268 71 0 chr15 38989731 38989787 -62390734 + MER5B DNA MER1_type 50 109 -69 244 256 58 47 chr15 38989790 38989876 -62390645 + L2 LINE L2 2930 3016 -256 217 67 0 0 chr15 38990037 38990067 -62390454 + L2 LINE L2 3284 3313 0 483 178 59 40 chr15 38990863 38990964 -62389557 + MER20 DNA MER1_type 117 219 0 216 139 0 0 chr15 38991643 38991679 -62388842 - MIR SINE MIR -11 251 216 209 189 0 0 chr15 38991646 38991683 -62388838 - L2 LINE L2 -20 3293 3257 * 368 310 28 7 chr15 38993416 38993561 -62386960 + MER5A DNA MER1_type 6 153 -36 234 249 141 104 chr15 38994635 38994932 -62385589 - L2 LINE L2 -18 3254 2947 1775 145 14 14 chr15 38995668 38995965 -62384556 + AluJo SINE Alu 1 297 -15 2272 105 0 3 chr15 38995967 38996281 -62384240 + AluSq SINE Alu 1 313 0 21 0 0 0 chr15 38997001 38997022 -62383499 + AT_rich Low_complexity Low_complexity 1 21 0 450 180 0 0 chr15 38998467 38998549 -62381972 + MER69 DNA AcHobo 2442 2523 -3 380 274 37 30 chr15 38999398 38999533 -62380988 + MIR SINE MIR 125 260 -2 2199 93 20 3 chr15 38999570 38999872 -62380649 - AluSq SINE Alu -6 307 1 660 211 114 63 chr15 39000382 39000619 -62379902 + MIR SINE MIR 14 262 0 332 267 89 10 chr15 39000737 39000838 -62379683 - MIR3 SINE MIR -9 199 91 2163 118 158 13 chr15 39000970 39001344 -62379177 + MSTA LTR MaLR 1 428 0 258 291 124 78 chr15 39002231 39002537 -62377984 + L2 LINE L2 2953 3272 0 1899 204 26 33 chr15 39002926 39003347 -62377174 + MER63B DNA MER1_type 19 436 0 2244 71 3 3 chr15 39003547 39003842 -62376679 + AluSc SINE Alu 1 295 -14 296 237 35 41 chr15 39004351 39004520 -62376001 + (CACCAT)n Simple_repeat Simple_repeat 5 172 0 * 358 232 18 36 chr15 39004412 39004580 -62375941 + (CCA)n Simple_repeat Simple_repeat 1 165 0 216 0 0 0 chr15 39005703 39005727 -62374794 + (A)n Simple_repeat Simple_repeat 1 24 0 2215 91 28 3 chr15 39005748 39006035 -62374486 + AluSq SINE Alu 7 300 -13 399 313 60 25 chr15 39006131 39006499 -62374022 + L1MC4a LINE L1 4280 4660 -1486 897 259 68 29 chr15 39006599 39006921 -62373600 + L1MC4a LINE L1 4854 5162 -1133 2200 101 0 7 chr15 39006921 39007217 -62373304 + AluSg SINE Alu 5 298 -12 897 259 68 29 chr15 39007217 39007562 -62372959 + L1MC4a LINE L1 5162 5552 -743 1919 155 24 0 chr15 39007579 39007875 -62372646 + AluSx SINE Alu 1 303 -9 1302 172 96 33 chr15 39007938 39008270 -62372251 - MLT1B LTR MaLR -37 353 1 444 46 15 0 chr15 39008319 39008384 -62372137 + MER41A LTR ERV1 401 466 -88 848 249 36 68 chr15 39008403 39008660 -62371861 + L1MC4a LINE L1 5612 5855 -1953 2107 129 10 0 chr15 39008660 39008955 -62371566 - AluJo SINE Alu -14 298 1 848 249 36 68 chr15 39008955 39009062 -62371459 + L1MC4a LINE L1 5855 5964 -1844 420 309 61 93 chr15 39009416 39009694 -62370827 - L2 LINE L2 -18 3254 2986 4227 140 41 26 chr15 39009701 39010996 -62369525 - LTR12 LTR ERV1 0 1522 6 815 292 132 32 chr15 39011020 39011369 -62369152 - L2 LINE L2 -357 2957 2549 2491 82 0 0 chr15 39011369 39011672 -62368849 + AluSx SINE Alu 1 303 -9 815 292 132 32 chr15 39011672 39011785 -62368736 - L2 LINE L2 -765 2549 2449 205 290 51 72 chr15 39011793 39011931 -62368590 - MIR SINE MIR -24 238 104 235 253 114 0 chr15 39012147 39012226 -62368295 - MIR SINE MIR -84 124 37 318 363 53 29 chr15 39012315 39012486 -62368035 + L1MEd LINE L1 2 176 -5943 2028 102 33 53 chr15 39012698 39012826 -62367695 + AluSp SINE Alu 1 130 -183 180 0 0 0 chr15 39012826 39012846 -62367675 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2028 102 33 53 chr15 39012846 39013020 -62367501 + AluSp SINE Alu 130 297 -16 194 278 0 0 chr15 39013768 39013804 -62366717 + MIR SINE MIR 80 115 -147 293 319 55 0 chr15 39014317 39014408 -62366113 + L2 LINE L2 3217 3312 -1 588 238 78 121 chr15 39014681 39015102 -62365419 + L2 LINE L2 2870 3272 0 2869 3 0 0 chr15 39015422 39015723 -62364798 - AluYa5 SINE Alu -10 301 1 710 172 57 73 chr15 39016232 39016424 -62364097 + L2 LINE L2 3124 3312 -1 603 183 70 49 chr15 39016797 39016939 -62363582 - L2 LINE L2 0 3313 3169 1725 159 36 67 chr15 39017654 39018045 -62362476 + MER34B LTR ERV1 11 389 -176 432 270 140 17 chr15 39018172 39018350 -62362171 - MIR3 SINE MIR -7 201 2 405 273 14 43 chr15 39018942 39019081 -62361440 - MIR3 SINE MIR -68 140 6 426 116 12 23 chr15 39019134 39019220 -62361301 + (GGAA)n Simple_repeat Simple_repeat 2 86 0 403 317 25 12 chr15 39019924 39019943 -62360578 - MIR SINE MIR -98 164 147 189 0 0 0 chr15 39019943 39019964 -62360557 + (TTC)n Simple_repeat Simple_repeat 1 21 0 403 317 25 12 chr15 39019964 39020105 -62360416 - MIR SINE MIR -115 147 2 2237 125 0 7 chr15 39020566 39020870 -62359651 + AluSx SINE Alu 1 302 -10 896 286 29 7 chr15 39021056 39021332 -62359189 + LTR16C LTR ERVL 3 284 -207 437 172 189 8 chr15 39021351 39021431 -62359090 + MER53 DNA DNA 1 65 -124 896 213 0 6 chr15 39021431 39021595 -62358926 - FRAM SINE Alu -3 163 1 437 172 189 8 chr15 39021595 39021636 -62358885 + MER53 DNA DNA 65 144 -45 571 239 48 6 chr15 39021667 39021834 -62358687 + LTR16C LTR ERVL 316 489 -2 1544 200 29 0 chr15 39023281 39023561 -62356960 + AluJo SINE Alu 1 288 -24 3974 124 39 19 chr15 39023797 39024433 -62356088 + MER39B LTR ERV1 1 649 -4 216 196 0 20 chr15 39024588 39024639 -62355882 + G-rich Low_complexity Low_complexity 3 52 0 1831 58 0 27 chr15 39025596 39025821 -62354700 - AluSx SINE Alu -93 219 1 632 270 102 0 chr15 39025913 39026109 -62354412 - MIR SINE MIR 0 262 47 295 313 0 0 chr15 39026152 39026248 -62354273 - L1ME4a LINE L1 -210 5911 5816 256 329 121 7 chr15 39026257 39026406 -62354115 - L1ME4a LINE L1 -364 5757 5592 192 256 139 66 chr15 39027508 39027645 -62352876 + L2 LINE L2 2125 2271 -1043 393 298 147 40 chr15 39027718 39027916 -62352605 - MIR SINE MIR -30 232 14 208 300 0 0 chr15 39028176 39028226 -62352295 + L2 LINE L2 3214 3263 -9 1932 122 0 51 chr15 39028668 39028963 -62351558 + AluJo SINE Alu 1 280 -32 198 0 0 0 chr15 39028963 39028985 -62351536 + (TAAAA)n Simple_repeat Simple_repeat 1 22 0 272 296 104 35 chr15 39029972 39030202 -62350319 + L1MC5 LINE L1 7331 7576 -385 892 186 23 0 chr15 39030263 39030440 -62350081 + L1MC3 LINE L1 7236 7416 -369 * 1340 241 131 88 chr15 39030432 39030830 -62349691 + L1MEc LINE L1 220 600 -5796 1757 119 0 0 chr15 39030830 39031066 -62349455 + AluSq SINE Alu 73 308 -5 1340 241 131 88 chr15 39031066 39031278 -62349243 + L1MEc LINE L1 600 801 -5595 607 140 20 0 chr15 39031278 39031378 -62349143 + L1PA16 LINE L1 6056 6157 -9 1340 241 131 88 chr15 39031378 39031562 -62348959 + L1MEc LINE L1 801 1049 -5347 767 62 0 0 chr15 39031566 39031662 -62348859 + HY3 scRNA scRNA 5 100 -1 2193 117 17 0 chr15 39032055 39032354 -62348167 - AluY SINE Alu -7 304 1 215 250 173 58 chr15 39032430 39032534 -62347987 - MIR SINE MIR -1 261 146 1508 183 21 3 chr15 39033141 39033430 -62347091 - L1MB7 LINE L1 -10 6174 5881 290 271 47 0 chr15 39033818 39033903 -62346618 + MIR SINE MIR 98 186 -76 311 239 42 0 chr15 39034051 39034122 -62346399 + MIR SINE MIR 119 192 -70 1097 255 24 0 chr15 39034129 39034380 -62346141 - MIR SINE MIR -5 257 1 285 196 0 0 chr15 39034387 39034438 -62346083 + MIR SINE MIR 211 261 -1 214 278 56 83 chr15 39034535 39034643 -62345878 + L2 LINE L2 3168 3272 0 2317 95 0 7 chr15 39036194 39036498 -62344023 - AluSg SINE Alu -8 302 1 344 314 98 30 chr15 39038029 39038293 -62342228 + L2 LINE L2 2988 3269 -3 638 300 99 69 chr15 39038375 39038923 -62341598 + L2 LINE L2 2710 3271 -1 2210 138 0 0 chr15 39038933 39039245 -62341276 + AluJb SINE Alu 1 312 0 337 261 180 43 chr15 39039704 39039915 -62340606 + L1ME4a LINE L1 5879 6118 -3 524 198 119 2 chr15 39040809 39040955 -62339566 - MIR SINE MIR -47 161 3 466 330 6 0 chr15 39040993 39041175 -62339346 + L1ME LINE L1 5618 5800 -321 344 62 0 0 chr15 39041357 39041405 -62339116 - MADE1 DNA Mariner 0 80 33 346 123 0 0 chr15 39041406 39041463 -62339058 + L1PA15 LINE L1 5984 6040 -125 5387 55 1 1 chr15 39041463 39042123 -62338398 + L1PA5 LINE L1 5495 6154 0 841 150 0 36 chr15 39042144 39042284 -62338237 + L1PA15 LINE L1 6023 6157 -8 182 61 0 30 chr15 39042736 39042769 -62337752 + (GA)n Simple_repeat Simple_repeat 1 32 0 278 262 102 73 chr15 39043161 39043367 -62337154 + L1ME LINE L1 5694 5826 -295 423 248 51 33 chr15 39044496 39044659 -62335862 + MIR SINE MIR 51 212 -50 180 0 0 0 chr15 39044942 39044962 -62335559 + (T)n Simple_repeat Simple_repeat 1 20 0 2570 68 0 0 chr15 39044964 39045275 -62335246 - AluY SINE Alu 0 311 1 5889 186 70 6 chr15 39046323 39046391 -62334130 + L1MB7 LINE L1 3921 3983 -2201 2032 88 0 0 chr15 39046391 39046641 -62333880 + AluSg1 SINE Alu 1 250 -59 5889 186 70 6 chr15 39046641 39048683 -62331838 + L1MB7 LINE L1 3983 6176 -8 518 278 28 56 chr15 39048924 39049104 -62331417 - MIR SINE MIR -5 257 83 557 281 83 20 chr15 39049583 39049836 -62330685 + L1MC4a LINE L1 5643 5911 -1897 21 0 0 0 chr15 39050002 39050023 -62330498 + AT_rich Low_complexity Low_complexity 1 21 0 566 311 28 0 chr15 39050300 39050477 -62330044 - MIR3 SINE MIR -7 201 20 202 182 167 61 chr15 39053552 39053618 -62326903 + L2 LINE L2 3209 3281 -32 604 302 73 0 chr15 39053655 39053847 -62326674 - MIR SINE MIR -37 225 20 280 276 155 43 chr15 39054873 39054989 -62325532 + MIR3 SINE MIR 33 161 -47 5777 104 9 3 chr15 39055190 39056651 -62323870 - L1PA14 LINE L1 0 6161 4706 22 88 0 0 chr15 39056659 39056716 -62323805 + AT_rich Low_complexity Low_complexity 1 57 0 1963 116 7 3 chr15 39056723 39057031 -62323490 - AluSx SINE Alu 0 309 1 320 190 0 147 chr15 39057034 39057150 -62323371 - MIR SINE MIR -50 212 114 231 214 214 0 chr15 39057498 39057582 -62322939 - MIR3 SINE MIR -16 192 91 185 94 31 0 chr15 39057590 39057622 -62322899 + GA-rich Low_complexity Low_complexity 3 35 0 2021 117 3 0 chr15 39057646 39057945 -62322576 - AluSq SINE Alu -13 300 1 2116 104 0 35 chr15 39058400 39058718 -62321803 + AluSg SINE Alu 1 307 -3 329 250 0 10 chr15 39058785 39058889 -62321632 + GA-rich Low_complexity Low_complexity 2 104 0 342 273 8 23 chr15 39059137 39059269 -62321252 + L1ME4a LINE L1 5992 6121 0 2072 81 11 7 chr15 39059329 39059637 -62320884 + AluSq SINE Alu 1 309 0 234 283 66 28 chr15 39061344 39061450 -62319071 - MIR3 SINE MIR -96 112 3 247 299 13 13 chr15 39061557 39061634 -62318887 + L2 LINE L2 3232 3308 -5 1574 161 41 17 chr15 39062350 39062642 -62317879 - AluJo SINE Alu -13 299 1 240 254 254 0 chr15 39063942 39064060 -62316461 + MIR SINE MIR 24 171 -91 231 195 0 0 chr15 39064115 39064156 -62316365 + (CACCAT)n Simple_repeat Simple_repeat 2 42 0 2132 108 3 0 chr15 39064230 39064526 -62315995 + AluSq SINE Alu 1 297 -16 2018 113 22 92 chr15 39064572 39064942 -62315579 - LTR3b LTR ERVK 0 500 157 659 224 92 16 chr15 39064990 39065199 -62315322 - MIR SINE MIR -20 242 18 495 170 18 9 chr15 39065300 39065412 -62315109 - MER53 DNA DNA -8 181 69 * 769 129 74 49 chr15 39065410 39065573 -62314948 - MER53 DNA DNA -22 167 1 380 241 54 96 chr15 39066096 39066262 -62314259 - MIR SINE MIR -48 214 56 903 224 120 100 chr15 39066611 39066658 -62313863 - L1MC4 LINE L1 0 8042 7997 2301 81 0 0 chr15 39066658 39066956 -62313565 + AluY SINE Alu 1 298 -13 903 224 120 100 chr15 39066956 39067366 -62313155 - L1MC4 LINE L1 -45 7997 7570 484 149 0 0 chr15 39067366 39067453 -62313068 - L1PB4 LINE L1 0 6156 6070 903 224 120 100 chr15 39067453 39067553 -62312968 - L1MC4 LINE L1 -472 7570 7473 398 190 116 15 chr15 39067659 39067785 -62312736 - MIR SINE MIR -50 212 73 2102 94 31 0 chr15 39067815 39068101 -62312420 + AluSx SINE Alu 1 295 -17 189 195 0 0 chr15 39068233 39068274 -62312247 + (CA)n Simple_repeat Simple_repeat 2 42 0 1252 82 22 27 chr15 39069144 39069328 -62311193 + AluSg SINE Alu 1 183 -127 770 70 0 0 chr15 39069346 39069446 -62311075 - L1PA14 LINE L1 -3 6158 6059 234 62 0 0 chr15 39069725 39069757 -62310764 + (CA)n Simple_repeat Simple_repeat 2 33 0 290 247 14 0 chr15 39071065 39071138 -62309383 + MIR SINE MIR 77 150 -112 253 200 5 185 chr15 39072346 39072541 -62307980 + L1MC5 LINE L1 7619 7778 -183 1899 120 46 0 chr15 39072545 39072829 -62307692 + AluSx SINE Alu 2 298 -14 1594 193 33 30 chr15 39072884 39072952 -62307569 - MER58B DNA MER1_type -2087 333 267 13163 35 2 0 chr15 39072952 39075280 -62305241 - L1PA4 LINE L1 -1 6154 3825 1594 193 33 30 chr15 39075280 39075543 -62304978 - MER58B DNA MER1_type -2153 267 1 285 214 30 92 chr15 39075548 39075679 -62304842 + L1MC5 LINE L1 7809 7931 -30 537 261 137 43 chr15 39076198 39076520 -62304001 - L1ME4a LINE L1 -1 6120 5769 587 275 12 12 chr15 39076951 39077111 -62303410 + MIR SINE MIR 66 225 -37 285 191 0 63 chr15 39077603 39077729 -62302792 + G-rich Low_complexity Low_complexity 2 119 0 25 143 0 0 chr15 39078335 39078377 -62302144 + AT_rich Low_complexity Low_complexity 1 42 0 2073 115 7 0 chr15 39078377 39078664 -62301857 + AluSx SINE Alu 1 289 -23 279 0 0 0 chr15 39078665 39078696 -62301825 + (TA)n Simple_repeat Simple_repeat 2 32 0 1978 122 7 3 chr15 39079284 39079579 -62300942 + AluSx SINE Alu 1 296 -16 32 0 0 0 chr15 39079855 39079887 -62300634 + GC_rich Low_complexity Low_complexity 1 32 0 248 164 18 36 chr15 39080676 39080731 -62299790 + L2 LINE L2 3219 3272 0 429 249 170 24 chr15 39080844 39081009 -62299512 - MIR SINE MIR -61 201 13 262 271 146 35 chr15 39081025 39081169 -62299352 - MIR SINE MIR -71 191 32 27 65 0 0 chr15 39081444 39081475 -62299046 + GC_rich Low_complexity Low_complexity 1 31 0 253 298 106 78 chr15 39083745 39083899 -62296622 - L3b LINE CR1 -252 1331 1168 2781 3 0 3 chr15 39083899 39084211 -62296310 - AluYa5 SINE Alu 0 311 1 253 298 106 78 chr15 39084211 39084274 -62296247 - L3b LINE CR1 -415 1168 1108 221 306 59 12 chr15 39085124 39085209 -62295312 - L2 LINE L2 -672 2642 2554 194 322 34 0 chr15 39086387 39086446 -62294075 + MIR3 SINE MIR 15 75 -133 28 29 0 0 chr15 39086827 39086862 -62293659 + AT_rich Low_complexity Low_complexity 1 35 0 671 170 47 0 chr15 39086863 39086969 -62293552 - FLAM_A SINE Alu -26 116 6 374 186 108 29 chr15 39086974 39087076 -62293445 - MER103 DNA DNA -21 145 36 455 281 39 26 chr15 39087152 39087307 -62293214 + MIR SINE MIR 20 174 -62 311 246 95 48 chr15 39087410 39087536 -62292985 - L1MEc LINE L1 -5092 1304 1173 1683 121 83 31 chr15 39087539 39087829 -62292692 - AluSx SINE Alu -7 305 1 451 275 198 24 chr15 39089084 39089175 -62291346 + MIR SINE MIR 20 94 -168 1942 99 39 3 chr15 39089175 39089459 -62291062 + AluSp SINE Alu 1 294 -19 451 275 198 24 chr15 39089459 39089574 -62290947 + MIR SINE MIR 94 262 0 279 204 0 0 chr15 39089689 39089738 -62290783 - MER103 DNA DNA -45 121 73 2357 59 0 16 chr15 39091799 39092104 -62288417 - AluY SINE Alu -11 300 1 23 0 0 0 chr15 39092936 39092959 -62287562 + AT_rich Low_complexity Low_complexity 1 23 0 1574 157 21 7 chr15 39093069 39093356 -62287165 - AluSg SINE Alu -19 291 1 804 171 77 33 chr15 39094975 39095156 -62285365 - AluJb SINE Alu -123 189 1 310 132 19 0 chr15 39095184 39095237 -62285284 - L1M4 LINE L1 -2098 4048 3995 363 254 85 31 chr15 39095407 39095537 -62284984 - L1ME4a LINE L1 -217 5904 5768 480 180 40 0 chr15 39095686 39095786 -62284735 - MER21B LTR ERV1 -11 852 749 209 239 0 22 chr15 39096102 39096148 -62284373 - L2 LINE L2 -13 3259 3215 612 195 31 23 chr15 39096647 39096775 -62283746 + MER5B DNA MER1_type 1 129 -49 1114 133 0 0 chr15 39096864 39097029 -62283492 - AluSp SINE Alu -12 301 137 1841 88 11 46 chr15 39097812 39098095 -62282426 + AluY SINE Alu 1 273 -38 493 252 207 14 chr15 39098508 39098730 -62281791 + L2 LINE L2 3031 3295 -18 393 264 208 0 chr15 39098871 39098977 -62281544 - L2 LINE L2 -1 3312 3185 294 304 0 13 chr15 39099952 39100031 -62280490 - MIR SINE MIR -157 105 28 258 264 154 27 chr15 39101389 39101499 -62279022 - L2 LINE L2 0 3272 3149 1298 108 54 0 chr15 39101723 39101908 -62278613 + MER20 DNA MER1_type 1 195 -24 649 177 57 28 chr15 39101945 39102086 -62278435 + MER105 DNA DNA 1 145 -59 958 185 174 99 chr15 39102807 39103113 -62277408 - L1MC5 LINE L1 -309 7652 7298 2212 97 0 3 chr15 39103113 39103413 -62277108 - AluY SINE Alu -12 299 1 958 185 174 99 chr15 39103413 39103571 -62276950 - L1MC5 LINE L1 -663 7298 7153 2116 120 10 0 chr15 39103659 39103959 -62276562 - AluSq SINE Alu -10 303 1 404 256 210 16 chr15 39104049 39104358 -62276163 - L1ME4a LINE L1 -173 5948 5580 928 281 118 27 chr15 39104688 39105171 -62275350 - L2 LINE L2 -20 3293 2770 22 0 0 0 chr15 39105657 39105679 -62274842 + AT_rich Low_complexity Low_complexity 1 22 0 1718 145 7 3 chr15 39105725 39106008 -62274513 - AluJo SINE Alu -17 295 12 977 152 0 7 chr15 39105868 39106019 -62274502 - AluJo SINE Alu -162 150 1 180 0 0 0 chr15 39106019 39106039 -62274482 + (T)n Simple_repeat Simple_repeat 1 20 0 243 146 146 48 chr15 39106279 39106351 -62274170 - L1ME4a LINE L1 -10 6111 6025 2143 114 7 0 chr15 39106351 39106649 -62273872 + AluSx SINE Alu 5 304 -8 243 146 146 48 chr15 39106649 39106679 -62273842 - L1ME4a LINE L1 -96 6025 5999 422 121 76 0 chr15 39106729 39106795 -62273726 - AluJ/FRAM SINE Alu -24 288 218 711 154 0 0 chr15 39106817 39106927 -62273594 - AluJb SINE Alu -201 111 2 520 200 156 11 chr15 39106929 39107109 -62273412 - L1ME4a LINE L1 -178 5943 5738 797 192 40 0 chr15 39107804 39107955 -62272566 + FRAM SINE Alu 4 160 -6 356 225 37 126 chr15 39109146 39109337 -62271184 - LTR67 LTR ERVL -83 474 301 477 253 132 23 chr15 39109918 39110092 -62270429 + MIR SINE MIR 13 205 -57 210 371 161 0 chr15 39110564 39110688 -62269833 + L2 LINE L2 3102 3245 -27 2498 63 0 25 chr15 39111297 39111612 -62268909 - AluY SINE Alu -4 307 1 1803 175 0 10 chr15 39112255 39112558 -62267963 + AluJo SINE Alu 2 301 -11 2089 122 7 3 chr15 39113052 39113346 -62267175 - AluSx SINE Alu -17 295 1 279 0 0 0 chr15 39113934 39113965 -62266556 + (TA)n Simple_repeat Simple_repeat 1 31 0 2198 115 7 0 chr15 39113966 39114253 -62266268 - AluSx SINE Alu -23 289 1 29 47 0 0 chr15 39114253 39114296 -62266225 + AT_rich Low_complexity Low_complexity 1 43 0 278 271 68 60 chr15 39114297 39114430 -62266091 + MIR SINE MIR 20 153 -109 364 266 92 9 chr15 39114553 39114662 -62265859 + L2 LINE L2 3136 3253 -19 1815 146 41 20 chr15 39115165 39115459 -62265062 - AluJb SINE Alu -12 300 1 430 195 110 8 chr15 39115874 39115992 -62264529 - MIR SINE MIR -14 248 119 508 355 59 36 chr15 39116373 39116934 -62263587 + L2 LINE L2 1366 1939 -1375 1434 258 86 40 chr15 39120855 39121207 -62259314 + LTR33 LTR ERVL 27 406 -115 855 210 124 0 chr15 39121207 39121393 -62259128 - MER3 DNA MER1_type 0 209 1 1434 258 86 40 chr15 39121393 39121493 -62259028 + LTR33 LTR ERVL 406 500 -21 1316 167 152 11 chr15 39121882 39122145 -62258376 + AluJb SINE Alu 1 300 -2 900 131 7 21 chr15 39122411 39122556 -62257965 + FLAM_C SINE Alu 1 143 0 845 164 82 0 chr15 39122582 39122728 -62257793 + AluJb SINE Alu 125 282 -30 183 211 92 105 chr15 39122767 39122843 -62257678 - MIR SINE MIR -186 76 2 2280 85 0 33 chr15 39123921 39124265 -62256256 - AluSx SINE Alu 0 312 1 236 178 343 0 chr15 39124626 39124699 -62255822 + L2 LINE L2 3208 3305 -8 2423 79 3 0 chr15 39125556 39125847 -62254674 - AluSc SINE Alu -17 292 1 235 297 193 5 chr15 39126001 39126213 -62254308 + L1 LINE L1 4757 5008 -1138 478 272 64 87 chr15 39126690 39127036 -62253485 - L2 LINE L2 -51 3262 2925 2347 133 87 30 chr15 39127123 39127558 -62252963 - L1MC1 LINE L1 0 6333 5874 2128 113 7 10 chr15 39127567 39127877 -62252644 - AluSq SINE Alu -4 309 1 1209 233 80 10 chr15 39127882 39128268 -62252253 - L2 LINE L2 -598 2716 2304 1689 151 28 7 chr15 39128856 39129140 -62251381 + AluJb SINE Alu 10 299 -13 285 269 83 9 chr15 39130016 39130124 -62250397 - MIR SINE MIR -100 162 47 2437 86 0 0 chr15 39130229 39130532 -62249989 - AluSq SINE Alu -10 303 1 924 127 0 0 chr15 39130983 39131109 -62249412 - FLAM_C SINE Alu -17 126 1 1187 115 6 0 chr15 39131401 39131566 -62248955 - FRAM SINE Alu -10 166 1 1944 151 3 3 chr15 39132682 39132986 -62247535 - AluJo SINE Alu -3 309 6 370 293 67 18 chr15 39133022 39133186 -62247335 + MIR SINE MIR 82 253 -9 226 262 0 33 chr15 39133244 39133305 -62247216 + MER115 DNA AcHobo 4 62 -631 730 153 26 0 chr15 39133905 39134047 -62246474 - L1MB5 LINE L1 -222 5944 5800 2426 160 15 20 chr15 39134238 39134367 -62246154 + L1MB5 LINE L1 5699 5827 -347 2307 109 0 0 chr15 39134367 39134670 -62245851 + AluSx SINE Alu 1 303 -9 2426 160 15 20 chr15 39134670 39134996 -62245525 + L1MB5 LINE L1 5827 6152 -22 370 318 126 25 chr15 39135008 39135247 -62245274 - LTR16C LTR ERVL -131 360 98 578 281 140 56 chr15 39135882 39136086 -62244435 + MLT1J LTR MaLR 1 186 -325 1983 137 40 0 chr15 39136086 39136385 -62244136 + AluSq SINE Alu 1 311 -2 578 281 140 56 chr15 39136385 39136643 -62243878 + MLT1J LTR MaLR 186 502 -9 502 349 53 3 chr15 39136693 39137014 -62243507 + L2 LINE L2 1276 1612 -1702 277 281 37 12 chr15 39137015 39137097 -62243424 + Charlie8 DNA MER1_type 3 86 -2331 404 147 52 86 chr15 39137100 39137216 -62243305 - L1ME1 LINE L1 0 6166 6055 1735 164 0 24 chr15 39137228 39137520 -62243001 + AluJo SINE Alu 3 287 -25 737 283 61 38 chr15 39137529 39137974 -62242547 + L2 LINE L2 2323 2777 -537 394 222 44 52 chr15 39138298 39138433 -62242088 + L2 LINE L2 3180 3313 0 329 238 25 0 chr15 39138964 39139044 -62241477 + L2 LINE L2 3191 3272 0 233 381 44 6 chr15 39139073 39139233 -62241288 - L2 LINE L2 -219 3053 2888 * 838 290 94 37 chr15 39139232 39139755 -62240766 + L2 LINE L2 2762 3313 0 424 263 128 40 chr15 39139765 39140039 -62240482 - L2 LINE L2 -464 2850 2553 1826 68 0 5 chr15 39140350 39140571 -62239950 + AluY SINE Alu 1 220 -91 315 85 0 0 chr15 39140571 39140618 -62239903 + AluY SINE Alu 253 299 -1 191 317 69 28 chr15 39141391 39141536 -62238985 - L2 LINE L2 -449 2865 2715 2398 78 3 0 chr15 39141694 39141987 -62238534 - AluY SINE Alu -17 294 1 352 264 66 71 chr15 39142089 39142286 -62238235 - MIR SINE MIR -46 216 21 471 113 0 0 chr15 39143310 39143390 -62237131 + (TG)n Simple_repeat Simple_repeat 2 81 0 2080 127 0 0 chr15 39143392 39143675 -62236846 - AluSx SINE Alu -29 283 1 207 255 0 0 chr15 39143676 39143727 -62236794 + L2 LINE L2 3169 3219 -94 2224 112 3 0 chr15 39144245 39144540 -62235981 + AluSx SINE Alu 9 304 -8 22 35 0 0 chr15 39144577 39144606 -62235915 + AT_rich Low_complexity Low_complexity 1 29 0 2373 133 12 31 chr15 39145320 39145735 -62234786 - L1MA5 LINE L1 0 6300 5894 2374 106 0 0 chr15 39146941 39147252 -62233269 - AluSx SINE Alu -1 311 1 1748 179 0 3 chr15 39147319 39147620 -62232901 + AluJb SINE Alu 3 302 -10 2432 59 0 14 chr15 39147790 39148080 -62232441 - AluY SINE Alu -25 286 1 485 232 43 43 chr15 39148170 39148308 -62232213 + MIR SINE MIR 17 154 -108 221 385 46 6 chr15 39149216 39149390 -62231131 + L2 LINE L2 2563 2743 -571 243 255 85 0 chr15 39149421 39149515 -62231006 - L1ME4a LINE L1 -13 6108 6007 375 204 50 99 chr15 39149705 39149811 -62230710 - L1ME4a LINE L1 -415 5706 5609 2309 75 7 0 chr15 39149811 39150125 -62230396 - AluSc SINE Alu 0 316 1 375 204 50 99 chr15 39150125 39150197 -62230324 - L1ME4a LINE L1 -512 5609 5535 269 283 288 16 chr15 39150421 39150612 -62229909 + MIR SINE MIR 16 258 -4 2258 115 3 0 chr15 39150949 39151426 -62229095 - AluSg SINE Alu 0 478 1 2571 63 0 0 chr15 39152154 39152456 -62228065 - AluY SINE Alu -9 302 1 358 269 92 7 chr15 39152507 39152648 -62227873 + MER112 DNA MER1_type 102 254 -6 306 282 36 77 chr15 39152944 39152986 -62227535 + L3 LINE CR1 516 558 -1019 2042 141 10 0 chr15 39152986 39153291 -62227230 - AluSx SINE Alu -4 308 1 306 282 36 77 chr15 39153291 39153443 -62227078 + L3 LINE CR1 558 702 -875 977 203 5 28 chr15 39153479 39153696 -62226825 + AluJo SINE Alu 84 295 -17 415 188 141 0 chr15 39153813 39153898 -62226623 - MER20 DNA MER1_type -122 97 1 575 276 46 10 chr15 39154023 39154219 -62226302 - MIR SINE MIR 0 262 60 436 298 121 28 chr15 39155508 39155790 -62224731 + L2 LINE L2 3005 3312 -1 23 33 0 0 chr15 39155957 39155987 -62224534 + AT_rich Low_complexity Low_complexity 1 30 0 680 189 163 11 chr15 39156240 39156430 -62224091 - MIR SINE MIR -16 246 28 2566 52 0 13 chr15 39156433 39156741 -62223780 - AluY SINE Alu -6 305 2 276 282 0 39 chr15 39156945 39157048 -62223473 + L2 LINE L2 3180 3278 -35 2983 135 121 34 chr15 39157048 39157117 -62223404 + L1MB3 LINE L1 5539 5601 -582 1650 189 10 20 chr15 39157117 39157414 -62223107 + AluJo SINE Alu 1 294 -18 2983 135 121 34 chr15 39157414 39157704 -62222817 + L1MB3 LINE L1 5601 5864 -319 2214 107 0 0 chr15 39157704 39157993 -62222528 - AluSx SINE Alu -23 289 1 2983 135 121 34 chr15 39157993 39158218 -62222303 + L1MB3 LINE L1 5864 6175 -8 1968 139 40 3 chr15 39160131 39160432 -62220089 + AluSx SINE Alu 1 312 0 349 270 38 8 chr15 39161520 39161721 -62218800 - MIR SINE MIR 0 262 1 313 293 60 20 chr15 39161951 39162101 -62218420 + L1MB8 LINE L1 5980 6135 -43 543 269 28 33 chr15 39162472 39162654 -62217867 + L1MB7 LINE L1 5986 6166 0 2404 69 7 7 chr15 39162663 39162967 -62217554 + AluY SINE Alu 1 304 -7 382 295 95 29 chr15 39163826 39164036 -62216485 + L1ME3A LINE L1 5597 5820 -301 180 316 53 0 chr15 39164204 39164261 -62216260 + L3 LINE CR1 1509 1568 -9 898 143 0 0 chr15 39164284 39164410 -62216111 - FLAM_C SINE Alu -17 126 1 1860 226 63 95 chr15 39164694 39164758 -62215763 - L1MC4 LINE L1 -1 8041 7976 2083 118 17 0 chr15 39164758 39165055 -62215466 + AluJo SINE Alu 1 302 -10 1860 226 63 95 chr15 39165055 39165245 -62215276 - L1MC4 LINE L1 -66 7976 7781 1817 150 40 0 chr15 39165245 39165545 -62214976 + AluJo SINE Alu 1 312 0 1860 226 63 95 chr15 39165545 39166119 -62214402 - L1MC4 LINE L1 -261 7781 7239 35 0 0 0 chr15 39166270 39166305 -62214216 + AT_rich Low_complexity Low_complexity 1 35 0 1836 136 16 48 chr15 39167106 39167415 -62213106 - AluSx SINE Alu -13 299 1 544 269 185 41 chr15 39167484 39167852 -62212669 - L2 LINE L2 0 3313 2893 565 363 113 16 chr15 39167960 39168517 -62212004 - L2 LINE L2 -483 2831 2221 297 0 0 0 chr15 39169651 39169684 -62210837 + (TA)n Simple_repeat Simple_repeat 2 34 0 204 40 0 0 chr15 39169684 39169709 -62210812 + (T)n Simple_repeat Simple_repeat 1 25 0 2363 108 0 0 chr15 39169748 39170055 -62210466 + AluSx SINE Alu 1 307 -5 221 264 36 129 chr15 39170721 39170762 -62209759 - MER5B DNA MER1_type -3 175 132 2174 128 10 0 chr15 39170762 39171067 -62209454 - AluSx SINE Alu -4 308 1 221 264 36 129 chr15 39171067 39171153 -62209368 - MER5B DNA MER1_type -46 132 59 1880 149 3 10 chr15 39171153 39171455 -62209066 - AluJb SINE Alu -11 301 2 221 264 36 129 chr15 39171455 39171466 -62209055 - MER5B DNA MER1_type -119 59 49 1033 189 70 48 chr15 39172226 39172496 -62208025 + L1ME3A LINE L1 5895 6170 0 234 305 78 19 chr15 39172540 39172694 -62207827 - L1 LINE L1 -1796 4350 4188 483 176 22 0 chr15 39172695 39172786 -62207735 - FLAM_A SINE Alu -9 133 41 622 253 192 32 chr15 39172797 39172993 -62207528 - L1 LINE L1 -2187 3959 3796 1761 157 34 115 chr15 39172993 39173401 -62207120 - THE1C LTR MaLR 0 375 1 622 253 192 32 chr15 39173401 39173710 -62206811 - L1 LINE L1 -2350 3796 3373 2246 114 10 0 chr15 39173806 39174113 -62206408 - AluSx SINE Alu -2 310 1 880 156 6 220 chr15 39174140 39174499 -62206022 - AluJo SINE Alu -30 282 1 1751 169 0 24 chr15 39174504 39174800 -62205721 - AluJo SINE Alu -18 294 6 1453 169 0 0 chr15 39174800 39175025 -62205496 - 7SLRNA srpRNA srpRNA -92 228 4 33 0 0 0 chr15 39175038 39175071 -62205450 + AT_rich Low_complexity Low_complexity 1 33 0 2039 143 0 13 chr15 39175073 39175373 -62205148 + AluSx SINE Alu 1 296 -16 405 0 0 0 chr15 39175380 39175425 -62205096 + (CA)n Simple_repeat Simple_repeat 2 46 0 316 278 31 10 chr15 39175575 39175672 -62204849 - L1 LINE L1 -3148 2998 2900 234 281 21 10 chr15 39175686 39175782 -62204739 - L1 LINE L1 -3329 2817 2721 2176 108 0 3 chr15 39175784 39176103 -62204418 - AluSx SINE Alu 0 312 1 256 262 33 16 chr15 39176103 39176169 -62204352 - L1 LINE L1 -3769 2377 2312 991 193 41 78 chr15 39176169 39176510 -62204011 - L1ME1 LINE L1 -164 6002 2254 1768 80 0 4 chr15 39176517 39176743 -62203778 - AluSc SINE Alu -14 295 71 3391 34 0 0 chr15 39176753 39177132 -62203389 - L1PA4 LINE L1 -3 6152 5774 443 119 0 0 chr15 39177147 39177206 -62203315 - AluSc SINE Alu -224 85 27 1094 204 168 8 chr15 39177207 39177388 -62203133 - L1M3 LINE L1 -730 5441 5290 2140 114 3 3 chr15 39177388 39177685 -62202836 - AluY SINE Alu -12 299 3 1094 204 168 8 chr15 39177685 39177884 -62202637 - L1M3 LINE L1 -881 5290 4999 2184 129 111 3 chr15 39177884 39178270 -62202251 + MSTA LTR MaLR 1 428 0 839 283 105 71 chr15 39179855 39180407 -62200114 - MLT1K LTR MaLR -16 572 2 271 242 11 84 chr15 39181100 39181195 -62199326 - MIR3 SINE MIR -34 174 87 1552 140 0 5 chr15 39181400 39181622 -62198899 - AluSg/x SINE Alu -20 292 72 760 172 8 15 chr15 39181948 39182082 -62198439 + FLAM_A SINE Alu 1 133 0 237 319 28 0 chr15 39182131 39182203 -62198318 - Charlie8 DNA MER1_type 0 2417 2344 458 263 119 27 chr15 39182480 39182773 -62197748 - L1MC5 LINE L1 -102 7859 7540 1688 146 86 4 chr15 39183060 39183328 -62197193 - AluJo SINE Alu -22 290 1 331 215 89 0 chr15 39183515 39183594 -62196927 - L1ME3A LINE L1 -321 5849 5764 1374 166 5 9 chr15 39184067 39184321 -62196200 - AluJo SINE Alu 0 313 61 1995 128 0 7 chr15 39184328 39184616 -62195905 + AluSq SINE Alu 13 298 -15 2084 95 3 57 chr15 39185695 39186010 -62194511 + AluSg SINE Alu 1 298 -12 578 229 115 13 chr15 39186322 39186479 -62194042 + MER5B DNA MER1_type 1 173 -5 388 311 115 75 chr15 39186765 39187138 -62193383 - L2 LINE L2 -6 3266 2879 208 289 157 12 chr15 39188323 39188406 -62192115 - MIR3 SINE MIR -8 200 106 332 276 86 0 chr15 39188526 39188631 -62191890 + MIR SINE MIR 33 146 -62 389 238 0 12 chr15 39189189 39189273 -62191248 - L2 LINE L2 -1 3312 3230 1279 174 30 30 chr15 39189476 39189781 -62190740 + AluSq SINE Alu 1 305 -8 222 224 0 0 chr15 39190696 39190745 -62189776 + L3 LINE CR1 1527 1575 -2 217 156 0 89 chr15 39190923 39190968 -62189553 + L2 LINE L2 3251 3291 -22 1803 166 3 10 chr15 39191660 39191962 -62188559 + AluJb SINE Alu 1 300 -12 2120 98 0 0 chr15 39191972 39192249 -62188272 + AluY SINE Alu 2 278 -33 324 0 0 0 chr15 39192249 39192285 -62188236 + (CA)n Simple_repeat Simple_repeat 1 36 0 2401 68 0 0 chr15 39192287 39192583 -62187938 + AluY SINE Alu 1 296 -15 390 259 46 96 chr15 39192847 39193044 -62187477 - L3b LINE CR1 -87 1496 1310 1473 156 28 16 chr15 39193374 39193624 -62186897 - AluSp SINE Alu -12 301 49 219 224 86 0 chr15 39193775 39193833 -62186688 + L2 LINE L2 3249 3311 -2 1874 129 64 0 chr15 39193867 39194147 -62186374 + AluSx SINE Alu 1 298 -14 2496 104 6 3 chr15 39194319 39194666 -62185855 + L1MB3 LINE L1 5835 6182 -1 22 70 0 0 chr15 39194859 39194902 -62185619 + AT_rich Low_complexity Low_complexity 1 43 0 2066 219 45 54 chr15 39194922 39195547 -62184974 + L1MC4 LINE L1 7183 7801 -241 1402 102 30 5 chr15 39195981 39196178 -62184343 + L1PA15 LINE L1 5957 6158 -7 180 273 0 0 chr15 39196719 39196763 -62183758 - MIR SINE MIR -4 258 215 * 1326 246 17 0 chr15 39196757 39197050 -62183471 + L2 LINE L2 2160 2457 -857 448 184 98 43 chr15 39197168 39197289 -62183232 - L1MC5 LINE L1 -133 7828 7694 2207 126 0 3 chr15 39197289 39197598 -62182923 + AluSx SINE Alu 1 308 -4 448 184 98 43 chr15 39197598 39197639 -62182882 - L1MC5 LINE L1 -267 7694 7657 754 176 78 14 chr15 39197646 39197788 -62182733 + AluJb SINE Alu 137 287 -25 2925 190 57 39 chr15 39197900 39197955 -62182566 - L1ME2 LINE L1 -1 6163 6110 1751 148 7 52 chr15 39197955 39198265 -62182256 - AluJo SINE Alu -16 296 1 2925 190 57 39 chr15 39198265 39198797 -62181724 - L1ME2 LINE L1 -54 6110 5560 1785 156 3 23 chr15 39198797 39199105 -62181416 + AluJo SINE Alu 9 310 -2 2925 190 57 39 chr15 39199105 39199186 -62181335 - L1ME2 LINE L1 -604 5560 5482 2088 105 20 16 chr15 39199204 39199509 -62181012 - AluY SINE Alu -5 306 1 1934 150 10 0 chr15 39199510 39199803 -62180718 - AluSx SINE Alu -16 296 1 791 205 24 101 chr15 39199812 39200100 -62180421 - L1ME2 LINE L1 0 6164 5899 1851 143 11 0 chr15 39200126 39200436 -62180085 + AluSx SINE Alu 1 313 0 1042 167 0 0 chr15 39200436 39200592 -62179929 + AluJb SINE Alu 137 292 -20 594 225 133 67 chr15 39200690 39200930 -62179591 + Charlie8 DNA MER1_type 9 264 -2153 270 234 13 52 chr15 39201000 39201077 -62179444 + Charlie8 DNA MER1_type 2343 2416 -1 201 317 0 0 chr15 39201263 39201304 -62179217 - L2 LINE L2 -98 3174 3134 304 230 0 27 chr15 39201606 39201680 -62178841 - AluSc SINE Alu -10 289 218 316 217 33 11 chr15 39201812 39201904 -62178617 + LTR16B LTR ERVL 271 364 -100 1155 168 51 5 chr15 39201930 39202144 -62178377 - MER2 DNA MER2_type -1 344 121 754 147 7 63 chr15 39202144 39202287 -62178234 + AluJo SINE Alu 2 136 -176 866 199 6 32 chr15 39202296 39202452 -62178069 - FRAM SINE Alu -24 152 1 674 258 46 16 chr15 39202482 39202676 -62177845 - MIR SINE MIR -36 226 27 2206 108 3 16 chr15 39202878 39203193 -62177328 + AluSx SINE Alu 1 311 -1 1543 139 111 84 chr15 39204935 39205276 -62175245 + MER51A LTR ERV1 1 569 -65 2385 94 0 0 chr15 39205276 39205575 -62174946 - AluSx SINE Alu -13 299 1 1543 139 111 84 chr15 39205575 39205643 -62174878 + MER51A LTR ERV1 569 634 0 26 64 0 0 chr15 39205719 39205766 -62174755 + AT_rich Low_complexity Low_complexity 1 47 0 1674 166 40 3 chr15 39205851 39206152 -62174369 - AluJb SINE Alu 0 312 1 1992 131 3 39 chr15 39206217 39206523 -62173998 + AluSg SINE Alu 1 295 -15 405 170 64 0 chr15 39206616 39206710 -62173811 - HAL1 LINE L1 -90 2417 2318 1691 170 17 30 chr15 39206710 39207010 -62173511 - AluJo SINE Alu -16 296 1 3131 205 147 27 chr15 39207032 39207626 -62172895 - HAL1 LINE L1 -307 2200 1678 858 154 0 22 chr15 39207626 39207789 -62172732 + FLAM_C SINE Alu 1 133 0 3131 205 147 27 chr15 39207789 39208155 -62172366 - HAL1 LINE L1 -829 1678 1125 831 193 58 40 chr15 39208168 39208391 -62172130 - L1MB8 LINE L1 -6 6172 5946 208 289 157 12 chr15 39209856 39209939 -62170582 - MIR3 SINE MIR -8 200 106 332 276 86 0 chr15 39210059 39210164 -62170357 + MIR SINE MIR 33 146 -62 422 226 0 12 chr15 39210722 39210806 -62169715 - L2 LINE L2 -1 3312 3230 2455 85 0 3 chr15 39211009 39211316 -62169205 + AluY SINE Alu 1 306 -5 1016 208 30 10 chr15 39211676 39211873 -62168648 + MER58A DNA MER1_type 24 224 0 21 0 0 0 chr15 39211948 39211969 -62168552 + AT_rich Low_complexity Low_complexity 1 21 0 1736 161 0 11 chr15 39213457 39213737 -62166784 + AluJb SINE Alu 12 288 -24 575 254 96 32 chr15 39215271 39215491 -62165030 - L3b LINE CR1 -136 1447 1214 216 301 105 35 chr15 39216121 39216264 -62164257 - L3 LINE CR1 -437 1140 988 234 235 49 62 chr15 39218087 39218168 -62162353 + MIR SINE MIR 104 183 -79 471 262 157 26 chr15 39219445 39219636 -62160885 + MIR SINE MIR 41 256 -6 182 270 90 60 chr15 39219760 39219860 -62160661 + L2 LINE L2 3150 3252 -20 2046 122 7 7 chr15 39219963 39220258 -62160263 - AluSx SINE Alu -17 295 1 1302 101 0 6 chr15 39220450 39220628 -62159893 - AluSq SINE Alu -5 308 132 278 167 128 90 chr15 39222285 39222363 -62158158 + MIR SINE MIR 30 109 -99 2189 133 0 0 chr15 39223148 39223456 -62157065 + AluSx SINE Alu 1 308 -4 2040 133 0 25 chr15 39223466 39223783 -62156738 + AluSx SINE Alu 1 309 -3 2684 134 40 113 chr15 39224134 39224196 -62156325 + L1MD3 LINE L1 7388 7453 -542 1868 137 7 14 chr15 39224196 39224480 -62156041 + AluSx SINE Alu 9 290 -22 2684 134 40 113 chr15 39224480 39224619 -62155902 + L1MD3 LINE L1 7453 7601 -394 1549 146 16 84 chr15 39224619 39224927 -62155594 - AluJo SINE Alu -21 291 5 2684 134 40 113 chr15 39224927 39225380 -62155141 + L1MD3 LINE L1 7601 7995 0 393 214 77 17 chr15 39227479 39227596 -62152925 + L1ME2 LINE L1 6007 6130 -34 1732 188 3 3 chr15 39227962 39228265 -62152256 + AluJb SINE Alu 1 303 -9 602 291 20 31 chr15 39228329 39228525 -62151996 + MER117 DNA MER1_type 1 194 -3 1998 131 7 7 chr15 39228626 39228923 -62151598 + AluSx SINE Alu 1 297 -15 281 328 70 35 chr15 39229003 39229287 -62151234 + L2 LINE L2 1979 2272 -1042 453 289 74 65 chr15 39229324 39229691 -62150830 + L2 LINE L2 322 691 -2623 580 204 61 8 chr15 39229705 39229837 -62150684 + MIR SINE MIR 123 261 -1 553 165 43 35 chr15 39229912 39230027 -62150494 + MER103 DNA DNA 7 122 -44 2337 148 39 58 chr15 39230042 39230476 -62150045 + MSTC LTR MaLR 1 426 -2 1859 154 10 0 chr15 39230597 39230889 -62149632 + AluJb SINE Alu 7 301 -11 2194 50 0 0 chr15 39231074 39231335 -62149186 + AluY SINE Alu 41 301 -10 2219 117 13 0 chr15 39231412 39231720 -62148801 + AluSx SINE Alu 1 312 0 2078 103 10 32 chr15 39231982 39232292 -62148229 + AluSg SINE Alu 2 304 -6 200 311 122 28 chr15 39232644 39232824 -62147697 - MIR SINE MIR -46 216 20 1731 196 0 3 chr15 39232924 39233236 -62147285 + AluJb SINE Alu 1 311 -1 196 302 0 0 chr15 39234151 39234204 -62146317 - L2 LINE L2 -7 3306 3254 228 143 0 0 chr15 39235656 39235698 -62144823 - L1MB4 LINE L1 -1 6179 6138 2628 204 67 19 chr15 39235892 39236546 -62143975 - Tigger7 DNA MER2_type -8 2579 1 859 164 0 0 chr15 39236667 39236795 -62143726 - FLAM_C SINE Alu -5 128 1 237 159 0 0 chr15 39237969 39238013 -62142508 + (TG)n Simple_repeat Simple_repeat 2 45 0 488 242 91 50 chr15 39238878 39239076 -62141445 + L3 LINE CR1 974 1179 -398 1739 154 148 22 chr15 39239729 39240053 -62140468 + MLT1A1 LTR MaLR 1 365 0 2119 115 0 22 chr15 39240229 39240543 -62139978 + AluSx SINE Alu 1 307 -5 1790 149 3 23 chr15 39240945 39241247 -62139274 - AluSx SINE Alu -16 296 1 1640 152 72 0 chr15 39241247 39241523 -62138998 - AluJb SINE Alu -16 296 1 180 0 0 0 chr15 39241714 39241734 -62138787 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1596 180 7 27 chr15 39241738 39242032 -62138489 - AluJb SINE Alu -24 288 1 1493 197 34 24 chr15 39242131 39242426 -62138095 + AluJo SINE Alu 1 298 -14 1488 175 67 4 chr15 39242606 39242875 -62137646 + AluJo SINE Alu 5 290 -22 1200 169 69 159 chr15 39243065 39243498 -62137023 - MSTD LTR MaLR -2 394 1 1772 185 62 67 chr15 39243855 39244422 -62136099 + L1MC5 LINE L1 7348 7911 -50 1899 148 10 3 chr15 39244508 39244805 -62135716 + AluJb SINE Alu 2 300 -12 444 264 96 1 chr15 39245384 39245532 -62134989 + Charlie8 DNA MER1_type 115 248 -1169 2105 51 0 16 chr15 39245532 39245788 -62134733 + AluY SINE Alu 52 303 -8 444 264 96 1 chr15 39245788 39245821 -62134700 + Charlie8 DNA MER1_type 248 1400 -17 1961 166 0 3 chr15 39245861 39246169 -62134352 + AluJb SINE Alu 5 311 -1 1463 143 16 12 chr15 39246997 39247249 -62133272 - AluSx SINE Alu -5 307 55 352 141 0 16 chr15 39247259 39247333 -62133188 - Alu SINE Alu -1 300 243 2415 72 0 3 chr15 39247334 39247638 -62132883 - AluY SINE Alu -8 303 1 487 193 53 0 chr15 39247877 39247991 -62132530 - AluY SINE Alu -189 122 3 1998 158 0 7 chr15 39248109 39248407 -62132114 - AluSx SINE Alu -16 296 1 2496 91 0 0 chr15 39248424 39248733 -62131788 - AluSx SINE Alu -3 309 1 32 81 0 0 chr15 39248840 39248914 -62131607 + AT_rich Low_complexity Low_complexity 1 74 0 1896 156 3 13 chr15 39249017 39249332 -62131189 + AluJb SINE Alu 1 312 0 329 284 96 50 chr15 39249794 39250076 -62130445 + L2 LINE L2 1812 2106 -1208 361 350 55 27 chr15 39250109 39250292 -62130229 + MIR SINE MIR 20 207 -55 217 302 48 0 chr15 39250519 39250582 -62129939 + L2 LINE L2 2692 2757 -557 210 208 0 21 chr15 39251756 39251804 -62128717 + CT-rich Low_complexity Low_complexity 2 48 0 258 105 0 0 chr15 39252102 39252140 -62128381 + (A)n Simple_repeat Simple_repeat 1 38 0 203 206 0 48 chr15 39252696 39252759 -62127762 + CT-rich Low_complexity Low_complexity 2 61 0 989 179 0 0 chr15 39252827 39252983 -62127538 - AluSg/x SINE Alu -23 287 132 5710 32 3 0 chr15 39253127 39253756 -62126765 - L1PA3 LINE L1 0 6155 5525 1122 214 71 4 chr15 39253792 39254072 -62126449 + AluSq SINE Alu 1 299 -4 1234 143 0 5 chr15 39254786 39255002 -62125519 + AluY SINE Alu 92 306 -5 379 222 37 0 chr15 39255187 39255276 -62125245 + MIR SINE MIR 19 109 -126 491 149 0 0 chr15 39255366 39255433 -62125088 - AluS SINE Alu -17 294 228 1528 97 0 0 chr15 39255433 39255628 -62124893 - AluSq SINE Alu -118 195 1 251 308 0 13 chr15 39255632 39255710 -62124811 + MER94 DNA DNA 32 108 -26 659 133 10 0 chr15 39255710 39255808 -62124713 + AluSc SINE Alu 2 100 -209 1507 172 7 26 chr15 39256438 39256746 -62123775 - AluY SINE Alu -9 302 1 1809 160 26 16 chr15 39257069 39257375 -62123146 - AluJb SINE Alu -3 309 1 2200 130 0 0 chr15 39257506 39257806 -62122715 - AluSx SINE Alu -12 300 1 5500 44 3 2 chr15 39257843 39258473 -62122048 + L1PA3 LINE L1 5525 6155 0 900 205 0 0 chr15 39258616 39258772 -62121749 + AluSg/x SINE Alu 134 289 -23 2667 46 0 0 chr15 39259159 39259465 -62121056 + AluY SINE Alu 1 306 -5 379 161 32 0 chr15 39259650 39259712 -62120809 + MIR SINE MIR 19 82 -126 1688 118 122 11 chr15 39259828 39260091 -62120430 - AluSg1 SINE Alu -17 292 1 275 244 0 122 chr15 39260095 39260172 -62120349 + MER94 DNA DNA 32 92 -42 2167 93 3 14 chr15 39260172 39260462 -62120059 + AluSc SINE Alu 1 287 -22 275 244 0 122 chr15 39260462 39260499 -62120022 + MER94 DNA DNA 92 132 -2 2262 106 3 0 chr15 39260618 39260911 -62119610 - AluSp SINE Alu -19 294 1 2002 135 10 3 chr15 39260981 39261278 -62119243 - AluSx SINE Alu -13 299 1 2074 122 10 10 chr15 39261687 39261982 -62118539 + AluSx SINE Alu 1 295 -17 24 100 0 0 chr15 39263541 39263621 -62116900 + AT_rich Low_complexity Low_complexity 1 80 0 1723 82 0 9 chr15 39263730 39263950 -62116571 + AluSg/x SINE Alu 95 312 0 2014 150 0 0 chr15 39263985 39264300 -62116221 + AluSx SINE Alu 1 315 0 1115 204 4 113 chr15 39264309 39264398 -62116123 + L1ME1 LINE L1 5390 5487 -679 2188 104 3 23 chr15 39264398 39264697 -62115824 + AluSx SINE Alu 1 293 -19 1115 204 4 113 chr15 39264697 39264745 -62115776 + L1ME1 LINE L1 5487 5539 -627 1822 159 3 19 chr15 39264745 39265053 -62115468 + AluJo SINE Alu 1 303 -9 1115 204 4 113 chr15 39265053 39265292 -62115229 + L1ME1 LINE L1 5539 5716 -450 2025 141 3 0 chr15 39265304 39265594 -62114927 + AluSx SINE Alu 1 291 -21 724 207 56 19 chr15 39265693 39265906 -62114615 + L1ME1 LINE L1 5707 5927 -239 1241 179 5 14 chr15 39265906 39266129 -62114392 - AluJo SINE Alu -5 307 87 920 221 21 55 chr15 39266139 39266374 -62114147 + L1ME1 LINE L1 5933 6159 -7 1676 184 7 0 chr15 39266501 39266805 -62113716 - AluJo SINE Alu 0 308 3 454 252 91 69 chr15 39266956 39266989 -62113532 + L1ME4a LINE L1 5521 5552 -569 1514 170 85 18 chr15 39266989 39267272 -62113249 + AluJb SINE Alu 1 302 -10 454 252 91 69 chr15 39267272 39267467 -62113054 + L1ME4a LINE L1 5552 5760 -361 1914 150 17 10 chr15 39267467 39267767 -62112754 - AluJb SINE Alu -10 302 1 454 252 91 69 chr15 39267767 39267855 -62112666 + L1ME4a LINE L1 5760 5845 -276 2181 109 7 3 chr15 39267923 39268217 -62112304 - AluSx SINE Alu -17 295 1 961 202 103 24 chr15 39269099 39269351 -62111170 + AluJb SINE Alu 31 302 -10 414 268 84 53 chr15 39269351 39269546 -62110975 + L1ME4a LINE L1 5553 5761 -360 1977 147 17 7 chr15 39269546 39269845 -62110676 - AluJb SINE Alu -10 302 1 414 268 84 53 chr15 39269845 39269933 -62110588 + L1ME4a LINE L1 5761 5845 -276 1534 137 0 4 chr15 39270001 39270227 -62110294 - AluSg/x SINE Alu -17 293 69 231 53 0 0 chr15 39271221 39271259 -62109262 + Alu SINE Alu 264 301 0 1513 176 3 52 chr15 39271321 39271628 -62108893 - AluJo SINE Alu -10 302 11 494 135 63 79 chr15 39271742 39271797 -62108724 - L1MB5 LINE L1 0 6174 6120 2261 129 0 0 chr15 39271797 39272106 -62108415 + AluSx SINE Alu 1 309 -3 494 135 63 79 chr15 39272106 39272176 -62108345 - L1MB5 LINE L1 -54 6120 6051 605 218 156 31 chr15 39272538 39272763 -62107758 + HAL1 LINE L1 11 263 -2244 1919 232 76 34 chr15 39272799 39273446 -62107075 + HAL1 LINE L1 455 1128 -1379 1069 150 26 75 chr15 39273451 39273644 -62106877 + L1MB7 LINE L1 5626 5746 -432 2200 98 3 17 chr15 39273644 39273962 -62106559 + AluSp SINE Alu 1 314 0 1069 150 26 75 chr15 39273962 39274181 -62106340 + L1MB7 LINE L1 5746 5974 -204 1188 136 86 47 chr15 39274187 39274444 -62106077 + L1MB7 LINE L1 5915 6181 -3 1436 194 201 132 chr15 39274447 39274813 -62105708 + HAL1 LINE L1 1125 1464 -1043 217 0 61 0 chr15 39274822 39274855 -62105666 + (TTG)n Simple_repeat Simple_repeat 2 36 0 839 167 0 0 chr15 39274855 39274977 -62105544 - FLAM_C SINE Alu -187 125 1 1436 194 201 132 chr15 39274977 39275593 -62104928 + HAL1 LINE L1 1464 2331 -176 1710 170 17 30 chr15 39275593 39275893 -62104628 + AluJo SINE Alu 1 296 -16 1436 194 201 132 chr15 39275893 39275987 -62104534 + HAL1 LINE L1 2331 2417 -90 1861 141 10 39 chr15 39276080 39276386 -62104135 - AluJb SINE Alu -15 297 1 2126 125 7 3 chr15 39276811 39277107 -62103414 - AluSx SINE Alu -15 297 1 682 219 0 0 chr15 39277118 39277246 -62103275 - FLAM_C SINE Alu -4 129 2 1875 170 0 16 chr15 39277285 39277597 -62102924 + AluJb SINE Alu 1 307 -5 625 232 101 29 chr15 39277684 39277891 -62102630 - MIR SINE MIR -27 235 14 29 28 0 0 chr15 39278213 39278249 -62102272 + AT_rich Low_complexity Low_complexity 1 36 0 337 73 0 0 chr15 39278487 39278528 -62101993 + MER4A LTR ERV1 554 594 -70 21 0 0 0 chr15 39278528 39278549 -62101972 + AT_rich Low_complexity Low_complexity 1 21 0 590 201 21 28 chr15 39278698 39278842 -62101679 + L1MB7 LINE L1 6042 6184 0 320 239 82 37 chr15 39280319 39280453 -62100068 + L1ME4a LINE L1 5981 6120 -1 2230 112 0 3 chr15 39280455 39280750 -62099771 - AluSx SINE Alu -18 294 1 31 0 0 0 chr15 39280758 39280789 -62099732 + AT_rich Low_complexity Low_complexity 1 31 0 836 231 93 4 chr15 39281115 39281340 -62099181 + MIR SINE MIR 5 249 -13 5787 109 102 117 chr15 39281876 39283468 -62097053 - pTR5 LTR ERV1 0 2438 741 224 219 0 0 chr15 39283478 39283519 -62097002 + A-rich Low_complexity Low_complexity 3 43 0 2318 114 0 0 chr15 39285009 39285316 -62095205 + AluSx SINE Alu 5 311 -1 2458 88 0 0 chr15 39286041 39286349 -62094172 + AluY SINE Alu 1 308 -3 936 139 0 0 chr15 39287951 39288080 -62092441 + FLAM_C SINE Alu 1 129 -14 292 181 278 0 chr15 39288141 39288213 -62092308 + FLAM_A SINE Alu 23 114 -19 213 39 0 0 chr15 39288213 39288239 -62092282 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 2175 119 3 10 chr15 39289189 39289499 -62091022 + AluSx SINE Alu 1 308 -4 241 278 0 0 chr15 39289955 39290009 -62090512 + CT-rich Low_complexity Low_complexity 1 54 0 288 0 0 0 chr15 39290483 39290515 -62090006 + (CA)n Simple_repeat Simple_repeat 2 33 0 559 141 0 109 chr15 39290515 39290557 -62089964 - AluJo/FRAM SINE Alu -3 309 264 2480 75 0 0 chr15 39290557 39290852 -62089669 + AluSc SINE Alu 1 295 -14 559 141 0 109 chr15 39290852 39290937 -62089584 - AluJo/FRAM SINE Alu -48 264 196 2382 59 0 7 chr15 39290968 39291284 -62089237 + AluY SINE Alu 1 314 0 1906 142 14 17 chr15 39291376 39291509 -62089012 + AluSx SINE Alu 1 133 -179 2315 88 0 0 chr15 39291509 39291803 -62088718 + AluY SINE Alu 1 294 -17 1906 142 14 17 chr15 39291803 39291965 -62088556 + AluSx SINE Alu 133 295 -17 414 248 59 98 chr15 39291972 39292226 -62088295 + L1MC4 LINE L1 7634 7877 -165 351 0 0 0 chr15 39292256 39292295 -62088226 + (CA)n Simple_repeat Simple_repeat 2 40 0 299 232 49 37 chr15 39292471 39292553 -62087968 + L1ME4a LINE L1 5966 6048 -73 2336 240 77 64 chr15 39292843 39293180 -62087341 + L2 LINE L2 2069 2400 -913 265 200 0 100 chr15 39293180 39293240 -62087281 + FLAM_A SINE Alu 1 40 -93 2336 240 77 64 chr15 39293240 39293770 -62086751 + L2 LINE L2 2400 3019 -294 1727 151 4 0 chr15 39293770 39294028 -62086493 - AluJb SINE Alu -11 301 43 2336 240 77 64 chr15 39294028 39294307 -62086214 + L2 LINE L2 3019 3293 -20 2535 64 0 0 chr15 39294316 39294614 -62085907 + AluY SINE Alu 1 298 -13 1959 113 0 28 chr15 39294614 39294896 -62085625 + AluSx SINE Alu 33 307 -5 2223 98 10 0 chr15 39295116 39295423 -62085098 + AluSp SINE Alu 1 310 -3 187 317 0 0 chr15 39295917 39295958 -62084563 - L2 LINE L2 -98 3174 3134 209 329 0 0 chr15 39296160 39296230 -62084291 - L2 LINE L2 -296 2976 2907 2216 119 0 0 chr15 39296263 39296556 -62083965 - AluSq SINE Alu -20 293 1 4587 158 45 39 chr15 39296557 39296857 -62083664 - L1MD2 LINE L1 -163 6196 5899 1755 176 7 0 chr15 39296857 39297147 -62083374 - AluJo SINE Alu -16 296 5 4587 158 45 39 chr15 39297147 39297359 -62083162 - L1MD2 LINE L1 -460 5899 5690 2151 121 30 0 chr15 39297359 39297657 -62082864 - AluSx SINE Alu -5 307 1 4587 158 45 39 chr15 39297657 39298183 -62082338 - L1MD2 LINE L1 -669 5690 5147 398 140 0 0 chr15 39298242 39298299 -62082222 + AluS SINE Alu 1 57 -246 549 74 0 49 chr15 39298680 39298761 -62081760 - Alu SINE Alu -241 77 1 2296 108 3 0 chr15 39298897 39299194 -62081327 - AluSq SINE Alu -15 298 1 30 0 0 0 chr15 39299461 39299491 -62081030 + AT_rich Low_complexity Low_complexity 1 30 0 201 339 7 3 chr15 39301604 39301686 -62078835 - MER5B DNA MER1_type -27 162 69 2334 109 3 0 chr15 39301905 39302209 -62078312 + AluSq SINE Alu 1 305 -8 2351 95 0 31 chr15 39302822 39303139 -62077382 + AluSg SINE Alu 1 307 -3 2351 106 0 3 chr15 39303173 39303474 -62077047 + AluSx SINE Alu 1 300 -12 225 0 0 0 chr15 39303474 39303499 -62077022 + (GA)n Simple_repeat Simple_repeat 2 26 0 2251 70 52 3 chr15 39304294 39304581 -62075940 - AluY SINE Alu -10 301 1 1825 84 59 0 chr15 39304744 39304981 -62075540 + AluSp SINE Alu 47 297 -16 377 259 69 65 chr15 39305522 39305738 -62074783 - L1MC5 LINE L1 -42 7919 7703 2047 145 7 0 chr15 39305740 39306036 -62074485 + AluSx SINE Alu 1 298 -14 1982 136 9 22 chr15 39306052 39306186 -62074335 + AluSx SINE Alu 1 135 -177 2434 92 0 0 chr15 39306186 39306480 -62074041 + AluSg SINE Alu 1 294 -16 1982 136 9 22 chr15 39306480 39306661 -62073860 + AluSx SINE Alu 135 312 0 228 194 15 30 chr15 39307905 39307972 -62072549 + CT-rich Low_complexity Low_complexity 1 66 0 1001 179 0 0 chr15 39308037 39308193 -62072328 - AluSg/x SINE Alu -23 289 134 5460 32 3 0 chr15 39308337 39308966 -62071555 - L1PA3 LINE L1 0 6155 5525 2109 131 0 3 chr15 39309004 39309294 -62071227 + AluSx SINE Alu 1 289 -23 466 230 0 0 chr15 39309304 39309391 -62071130 + FRAM SINE Alu 17 103 -73 281 26 26 0 chr15 39309480 39309518 -62071003 + (TC)n Simple_repeat Simple_repeat 2 40 0 1553 171 4 25 chr15 39309530 39309805 -62070716 - AluJo SINE Alu -39 273 5 1962 134 21 7 chr15 39309905 39310064 -62070457 - AluSx SINE Alu -17 295 129 2325 100 0 0 chr15 39310064 39310363 -62070158 - AluSc SINE Alu -10 299 1 1962 134 21 7 chr15 39310363 39310494 -62070027 - AluSx SINE Alu -183 129 1 181 370 0 0 chr15 39312752 39312806 -62067715 - L2 LINE L2 -76 3196 3143 846 300 121 58 chr15 39313119 39313905 -62066616 + L1MEd LINE L1 805 1679 -4864 1850 134 30 24 chr15 39314174 39314472 -62066049 - AluSx SINE Alu -11 301 2 904 248 40 58 chr15 39314473 39314733 -62065788 - L1M4 LINE L1 -3063 3083 2831 2151 106 55 0 chr15 39314733 39315026 -62065495 - AluSx SINE Alu -1 311 3 904 248 40 58 chr15 39315026 39315144 -62065377 - L1M4 LINE L1 -3315 2831 2712 21 82 0 0 chr15 39315711 39315760 -62064761 + AT_rich Low_complexity Low_complexity 1 49 0 22 70 0 0 chr15 39316011 39316054 -62064467 + AT_rich Low_complexity Low_complexity 1 43 0 1202 282 54 41 chr15 39316334 39316908 -62063613 + MLT1G LTR MaLR 10 549 0 3016 181 49 19 chr15 39317143 39318150 -62062371 + MER61-int LTR ERV1 1409 4471 -2525 1757 152 29 37 chr15 39318151 39318499 -62062022 + THE1B LTR MaLR 1 345 -19 812 207 17 0 chr15 39318517 39318691 -62061830 + MER61-int LTR ERV1 1720 1896 -3321 2427 63 0 0 chr15 39318945 39319231 -62061290 + AluY SINE Alu 14 299 -12 189 0 0 0 chr15 39319257 39319278 -62061243 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 428 286 141 39 chr15 39319667 39319950 -62060571 + L1MC5 LINE L1 7574 7885 -76 608 134 0 0 chr15 39320225 39320307 -62060214 - AluS SINE Alu -229 83 2 436 131 60 0 chr15 39322203 39322287 -62058234 - AluJ/FLAM SINE Alu -222 90 2 32 81 0 0 chr15 39322391 39322465 -62058056 + AT_rich Low_complexity Low_complexity 1 74 0 2532 91 0 0 chr15 39322572 39322881 -62057640 + AluSx SINE Alu 1 309 -3 2215 119 0 7 chr15 39322898 39323192 -62057329 + AluSx SINE Alu 1 292 -20 1243 208 112 11 chr15 39323198 39323458 -62057063 + AluJo SINE Alu 1 286 -16 2268 117 0 0 chr15 39324233 39324531 -62055990 - AluSx SINE Alu -14 298 1 188 0 74 0 chr15 39324676 39324703 -62055818 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 444 344 9 45 chr15 39325004 39325228 -62055293 - L3b LINE CR1 -137 1446 1231 2308 82 13 7 chr15 39327870 39328173 -62052348 + AluSp SINE Alu 1 305 -8 2147 115 24 0 chr15 39329757 39330052 -62050469 + AluSx SINE Alu 1 302 -10 337 293 51 32 chr15 39330446 39330603 -62049918 - MIR SINE MIR -56 206 47 354 266 18 9 chr15 39337534 39337647 -62042874 + GA-rich Low_complexity Low_complexity 1 114 0 1281 258 36 57 chr15 39341618 39341724 -62038797 - L1MC/D LINE L1 -2031 5777 5670 1590 166 6 65 chr15 39341724 39342049 -62038472 + AluJo SINE Alu 1 306 -6 1281 258 36 57 chr15 39342049 39342109 -62038412 - L1MC/D LINE L1 -2138 5670 5610 2467 77 0 0 chr15 39342109 39342408 -62038113 + AluY SINE Alu 1 299 -12 1281 258 36 57 chr15 39342408 39342682 -62037839 - L1MC/D LINE L1 -2198 5610 5345 675 223 24 24 chr15 39342688 39342854 -62037667 - FRAM SINE Alu 0 166 1 1072 123 6 6 chr15 39342982 39343152 -62037369 - L1MB5 LINE L1 0 6174 6005 544 29 0 0 chr15 39343152 39343221 -62037300 + MER41B LTR ERV1 481 549 -86 1767 151 85 0 chr15 39343237 39343504 -62037017 - L1MB5 LINE L1 -156 6018 5716 1662 174 40 17 chr15 39343504 39343802 -62036719 - AluJo SINE Alu -7 305 1 1767 151 85 0 chr15 39343802 39343865 -62036656 - L1MB5 LINE L1 -458 5716 5660 2308 93 21 0 chr15 39343866 39344156 -62036365 - AluSg SINE Alu -14 296 1 1681 191 30 3 chr15 39344221 39344525 -62035996 + AluJb SINE Alu 1 312 0 26 64 0 0 chr15 39344610 39344657 -62035864 + AT_rich Low_complexity Low_complexity 1 47 0 1436 139 111 84 chr15 39344733 39344801 -62035720 - MER51A LTR ERV1 0 634 569 2422 94 0 0 chr15 39344801 39345100 -62035421 + AluSx SINE Alu 1 299 -13 1436 139 111 84 chr15 39345100 39345441 -62035080 - MER51A LTR ERV1 -65 569 1 2408 80 0 10 chr15 39356031 39356330 -62024191 + AluSx SINE Alu 1 296 -16 1157 149 0 11 chr15 39356330 39356511 -62024010 + AluSg/x SINE Alu 134 312 0 522 221 92 131 chr15 39356520 39356747 -62023774 - L1MC5 LINE L1 -252 7709 7475 1650 179 14 3 chr15 39356747 39357032 -62023489 - AluJb SINE Alu -24 288 1 522 221 92 131 chr15 39357032 39357054 -62023467 - L1MC5 LINE L1 -486 7475 7454 2261 116 3 22 chr15 39357054 39357372 -62023149 + AluSq SINE Alu 1 312 -1 522 221 92 131 chr15 39357372 39357860 -62022661 - L1MC5 LINE L1 -507 7454 7000 1823 158 4 7 chr15 39357933 39358211 -62022310 - AluJb SINE Alu -34 278 2 450 0 0 0 chr15 39358267 39358317 -62022204 + (TG)n Simple_repeat Simple_repeat 2 51 0 1360 199 17 0 chr15 39358317 39358558 -62021963 - AluJo SINE Alu -26 286 42 333 244 125 3 chr15 39358569 39358725 -62021796 - L1MC4 LINE L1 -869 6939 6758 581 193 90 14 chr15 39358737 39358882 -62021639 + MER106A DNA MER1_type 44 199 -37 1186 86 0 0 chr15 39358883 39359074 -62021447 + L1PA4 LINE L1 5991 6155 0 2568 248 105 49 chr15 39359116 39360132 -62020389 - L1MC4a LINE L1 -1036 6772 5815 1628 167 6 62 chr15 39360132 39360456 -62020065 + AluJo SINE Alu 1 306 -6 2568 248 105 49 chr15 39360456 39360516 -62020005 - L1MC4a LINE L1 -1993 5815 5760 2409 81 3 0 chr15 39360516 39360814 -62019707 + AluY SINE Alu 1 299 -12 2568 248 105 49 chr15 39360814 39361088 -62019433 - L1MC4a LINE L1 -2048 5760 5345 675 223 24 24 chr15 39361094 39361260 -62019261 - FRAM SINE Alu 0 166 1 1084 123 6 6 chr15 39361388 39361558 -62018963 - L1MB5 LINE L1 0 6174 6005 567 29 0 0 chr15 39361558 39361627 -62018894 + MER41B LTR ERV1 481 549 -86 1955 139 45 45 chr15 39361643 39361928 -62018593 - L1MB5 LINE L1 -156 6018 5731 1590 148 41 19 chr15 39361928 39362199 -62018322 - AluJo SINE Alu -25 287 11 1955 139 45 45 chr15 39362199 39362272 -62018249 - L1MB5 LINE L1 -442 5732 5660 1859 145 20 7 chr15 39362273 39362577 -62017944 - AluJb SINE Alu -4 308 1 4954 181 127 162 chr15 39362577 39363632 -62016889 - L1MB5 LINE L1 -567 5607 4517 362 120 0 0 chr15 39363632 39363682 -62016839 - AluJb SINE Alu -7 295 246 875 153 5 100 chr15 39363684 39363723 -62016798 - AluJb SINE Alu -139 173 132 1952 109 0 34 chr15 39363723 39364016 -62016505 - AluSg SINE Alu -19 291 9 875 153 5 100 chr15 39364016 39364166 -62016355 - AluJb SINE Alu -180 132 2 1584 154 9 72 chr15 39364167 39364364 -62016157 - AluJo SINE Alu -13 299 91 2178 97 3 7 chr15 39364364 39364674 -62015847 + AluSx SINE Alu 3 311 -1 294 29 0 0 chr15 39364674 39364709 -62015812 + (TA)n Simple_repeat Simple_repeat 2 36 0 1584 154 9 72 chr15 39364709 39364829 -62015692 - AluJo SINE Alu -219 93 1 4954 181 127 162 chr15 39364829 39365000 -62015521 - L1MB5 LINE L1 -1658 4516 4341 1575 167 39 0 chr15 39365000 39365281 -62015240 + AluJb SINE Alu 1 292 -20 4954 181 127 162 chr15 39365281 39365320 -62015201 - L1MB5 LINE L1 -1833 4341 4302 1766 166 0 0 chr15 39365320 39365598 -62014923 + AluJb SINE Alu 14 291 -21 770 180 0 0 chr15 39365602 39365724 -62014797 - FLAM_C SINE Alu -11 122 1 4954 181 127 162 chr15 39365724 39365747 -62014774 - L1MB5 LINE L1 -1875 4299 4277 1587 177 44 0 chr15 39365747 39365920 -62014601 - AluJb SINE Alu -5 307 114 183 42 0 0 chr15 39365920 39365944 -62014577 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1587 177 44 0 chr15 39365944 39366064 -62014457 - AluJb SINE Alu -198 114 1 4954 181 127 162 chr15 39366064 39366854 -62013667 - L1MB5 LINE L1 -1897 4277 3461 2088 115 3 3 chr15 39366854 39367150 -62013371 + AluSx SINE Alu 1 296 -16 4954 181 127 162 chr15 39367150 39367225 -62013296 - L1MB5 LINE L1 -2713 3461 3385 2563 24 0 3 chr15 39367225 39367521 -62013000 - AluYa5 SINE Alu -16 295 1 4954 181 127 162 chr15 39367521 39367596 -62012925 - L1MB5 LINE L1 -2789 3385 3309 1309 213 72 4 chr15 39367596 39367873 -62012648 - AluJb SINE Alu -16 296 1 4954 181 127 162 chr15 39367873 39368042 -62012479 - L1MB5 LINE L1 -2865 3309 3136 1336 114 111 97 chr15 39368042 39368340 -62012181 + AluJb SINE Alu 1 302 -10 4954 181 127 162 chr15 39368340 39368382 -62012139 - L1MB5 LINE L1 -3038 3136 3094 2006 122 24 0 chr15 39368382 39368678 -62011843 + AluSx SINE Alu 3 305 -7 4954 181 127 162 chr15 39368678 39368949 -62011572 - L1MB5 LINE L1 -3080 3094 2815 1491 182 0 40 chr15 39368949 39369245 -62011276 - AluJo SINE Alu -2 310 27 2331 81 0 3 chr15 39369255 39369564 -62010957 - AluY SINE Alu -3 308 1 4954 181 127 162 chr15 39369564 39369616 -62010905 - L1MB5 LINE L1 -3368 2806 2754 778 211 56 0 chr15 39369616 39369777 -62010744 + FRAM SINE Alu 1 166 -10 4954 181 127 162 chr15 39369777 39369945 -62010576 - L1MB5 LINE L1 -3420 2754 2582 599 188 34 17 chr15 39369945 39370062 -62010459 - FLAM_A SINE Alu -10 123 5 4954 181 127 162 chr15 39370062 39370217 -62010304 - L1MB5 LINE L1 -3592 2582 2234 354 107 0 0 chr15 39370237 39370293 -62010228 + (CA)n Simple_repeat Simple_repeat 1 56 0 33 25 0 0 chr15 39370398 39370438 -62010083 + AT_rich Low_complexity Low_complexity 1 40 0 1903 140 0 3 chr15 39370461 39370754 -62009767 - AluSq SINE Alu -19 294 3 21 0 0 0 chr15 39370771 39370792 -62009729 + AT_rich Low_complexity Low_complexity 1 21 0 1707 171 0 31 chr15 39370883 39371205 -62009316 - AluJb SINE Alu 0 312 1 1815 145 6 25 chr15 39371208 39371525 -62008996 - AluSx SINE Alu -1 311 1 21 82 0 0 chr15 39371525 39371574 -62008947 + AT_rich Low_complexity Low_complexity 1 49 0 2214 108 0 7 chr15 39371657 39371964 -62008557 + AluSc SINE Alu 1 305 -4 339 123 0 10 chr15 39371973 39372176 -62008345 + AluSx SINE Alu 1 297 -4 576 337 75 39 chr15 39372204 39372646 -62007875 - L1M4 LINE L1 -6061 481 24 251 317 58 8 chr15 39372662 39372782 -62007739 - L1 LINE L1 -1127 5019 4894 1975 120 0 7 chr15 39372783 39373074 -62007447 + AluSx SINE Alu 1 289 -23 472 230 0 0 chr15 39373084 39373171 -62007350 + FRAM SINE Alu 17 103 -73 1440 200 3 23 chr15 39373275 39373585 -62006936 - AluJo SINE Alu -4 308 5 1851 124 20 27 chr15 39373685 39373851 -62006670 - AluSx SINE Alu -16 296 131 2173 99 0 0 chr15 39373851 39374145 -62006376 - AluSc SINE Alu -15 294 1 1851 124 20 27 chr15 39374145 39374276 -62006245 - AluSx SINE Alu -181 131 1 1815 169 0 0 chr15 39381169 39381465 -61999056 - AluJo SINE Alu -16 296 1 741 222 25 6 chr15 39381465 39381627 -61998894 - MIR3 SINE MIR -11 197 33 2196 125 0 3 chr15 39382735 39383048 -61997473 - AluSx SINE Alu 0 312 1 834 167 0 0 chr15 39385476 39385602 -61994919 - FLAM_C SINE Alu -17 126 1 280 227 45 162 chr15 39386579 39386733 -61993788 - MIR SINE MIR -93 169 34 1718 157 26 26 chr15 39387782 39388088 -61992433 + AluJb SINE Alu 1 306 -6 437 104 0 52 chr15 39390718 39390795 -61989726 + L1MB3 LINE L1 6080 6152 -31 372 280 160 8 chr15 39390932 39391057 -61989464 + MIR SINE MIR 1 144 -118 748 259 128 71 chr15 39391084 39391550 -61988971 + MLT1H LTR MaLR 1 548 -1 1163 223 103 13 chr15 39391552 39391852 -61988669 - MER46C DNA MER2_type -11 327 1 391 241 36 0 chr15 39391852 39391935 -61988586 + MIR SINE MIR 156 241 -21 1537 146 13 52 chr15 39393885 39394194 -61986327 + AluJo SINE Alu 14 310 -2 735 135 4 2 chr15 39394233 39394494 -61986027 + AluSx SINE Alu 1 308 -2 300 293 45 94 chr15 39394739 39395005 -61985516 + L1ME3A LINE L1 5775 6027 -143 372 133 0 0 chr15 39395014 39395074 -61985447 + (CA)n Simple_repeat Simple_repeat 2 61 0 293 300 0 0 chr15 39395123 39395213 -61985308 + L1MC4 LINE L1 6614 6703 -1339 245 258 0 43 chr15 39395178 39395271 -61985250 - L1MC4 LINE L1 -1340 6702 6614 * 2191 115 0 13 chr15 39395284 39395460 -61985061 - AluSq SINE Alu -4 309 137 2118 108 0 25 chr15 39395460 39395776 -61984745 - AluSq SINE Alu -5 308 1 2191 115 0 13 chr15 39395776 39395912 -61984609 - AluSq SINE Alu -176 137 1 34 0 0 0 chr15 39396194 39396228 -61984293 + AT_rich Low_complexity Low_complexity 1 34 0 1894 138 3 0 chr15 39396228 39396524 -61983997 - AluSq SINE Alu -16 297 1 1972 114 41 0 chr15 39399509 39399799 -61980722 - AluSx SINE Alu -10 302 1 184 315 0 0 chr15 39400698 39400752 -61979769 - L2 LINE L2 -4 3309 3256 1733 162 3 13 chr15 39400760 39401069 -61979452 + AluJb SINE Alu 1 306 -6 1498 174 7 79 chr15 39401122 39401253 -61979268 + AluJo SINE Alu 2 141 -197 1307 220 0 14 chr15 39401253 39401539 -61978982 + AluJo SINE Alu 1 282 -30 2214 68 6 40 chr15 39401539 39401861 -61978660 + AluY SINE Alu 1 311 0 1951 108 10 24 chr15 39401863 39402158 -61978363 - AluSg SINE Alu -19 291 1 1498 174 7 79 chr15 39402158 39402381 -61978140 + AluJo SINE Alu 141 338 0 466 245 80 123 chr15 39402637 39402677 -61977844 + L1ME3A LINE L1 5619 5659 -511 1186 174 53 0 chr15 39402677 39402884 -61977637 + MER20 DNA MER1_type 2 219 0 466 245 80 123 chr15 39402884 39403243 -61977278 + L1ME3A LINE L1 5659 6001 -169 2136 101 0 7 chr15 39403637 39403944 -61976577 + AluSq SINE Alu 3 307 -6 431 255 9 19 chr15 39406417 39406523 -61973998 + MIR SINE MIR 48 152 -110 2123 105 0 10 chr15 39406528 39406833 -61973688 + AluSc SINE Alu 1 302 -7 1655 175 0 3 chr15 39406864 39407156 -61973365 + AluJb SINE Alu 12 302 -10 408 254 23 39 chr15 39412228 39412358 -61968163 + MER94 DNA DNA 7 134 0 571 180 99 0 chr15 39412928 39413072 -61967449 + MIR SINE MIR 93 252 -10 1669 125 143 0 chr15 39414075 39414347 -61966174 + AluJb SINE Alu 1 311 -1 423 277 84 26 chr15 39417203 39417358 -61963163 + MIR3 SINE MIR 14 177 -31 2157 117 16 23 chr15 39417466 39417775 -61962746 + AluJb SINE Alu 1 307 -5 1889 153 0 10 chr15 39417811 39418112 -61962409 - AluJb SINE Alu -14 298 1 528 144 31 21 chr15 39418172 39418269 -61962252 + U6 snRNA snRNA 2 99 -8 2258 109 0 3 chr15 39418269 39418573 -61961948 - AluY SINE Alu -8 303 1 191 310 17 0 chr15 39419259 39419317 -61961204 - MIR SINE MIR -118 90 32 321 303 22 0 chr15 39419458 39419547 -61960974 - MIR3 SINE MIR -7 201 111 245 313 0 21 chr15 39421265 39421361 -61959160 - MIR SINE MIR -67 195 102 298 265 26 43 chr15 39421443 39421510 -61959011 - MIR SINE MIR -30 232 166 1806 147 0 15 chr15 39421510 39421782 -61958739 - AluSg SINE Alu -40 270 3 298 265 26 43 chr15 39421782 39421831 -61958690 - MIR SINE MIR -96 166 118 2274 95 0 0 chr15 39421948 39422264 -61958257 + AluSg SINE Alu 1 316 0 1992 131 0 0 chr15 39422384 39422658 -61957863 + AluSx SINE Alu 39 312 0 517 307 213 31 chr15 39422827 39423114 -61957407 - L3 LINE CR1 -20 1557 1219 193 286 20 92 chr15 39423183 39423281 -61957240 - L3 LINE CR1 -542 1035 945 222 323 21 21 chr15 39423998 39424094 -61956427 - MIR SINE MIR -68 140 45 2147 80 8 0 chr15 39424109 39424371 -61956150 + AluSx SINE Alu 39 302 -10 805 293 36 9 chr15 39424480 39424702 -61955819 - MIR SINE MIR 0 262 35 382 208 50 40 chr15 39424772 39424873 -61955648 + L2 LINE L2 3163 3264 -8 1557 153 0 124 chr15 39425196 39425370 -61955151 + AluJo SINE Alu 1 114 -198 2214 108 0 16 chr15 39425370 39425677 -61954844 + AluSg SINE Alu 1 302 -8 1557 153 0 124 chr15 39425677 39425841 -61954680 + AluJo SINE Alu 114 297 -15 374 261 22 0 chr15 39426274 39426366 -61954155 + MIR3 SINE MIR 98 191 -17 261 0 0 0 chr15 39426629 39426658 -61953863 + (TG)n Simple_repeat Simple_repeat 2 30 0 2242 103 3 19 chr15 39428953 39429264 -61951257 - AluSg SINE Alu 0 310 5 597 173 0 0 chr15 39429300 39429404 -61951117 + U13 snRNA snRNA 1 104 0 284 204 0 19 chr15 39430403 39430457 -61950064 + L2 LINE L2 3201 3253 -19 * 474 254 42 68 chr15 39430424 39430619 -61949902 - MIR3 SINE MIR -50 212 20 539 260 202 36 chr15 39430748 39430971 -61949550 - MIR SINE MIR 0 262 3 905 218 86 25 chr15 39432735 39432978 -61947543 - MIR SINE MIR -2 260 3 297 0 0 0 chr15 39434287 39434320 -61946201 + (CAG)n Simple_repeat Simple_repeat 1 33 0 375 256 51 34 chr15 39434876 39434993 -61945528 - MIR3 SINE MIR -7 201 83 2061 113 16 35 chr15 39435225 39435536 -61944985 - AluSx SINE Alu -2 310 6 2131 133 7 7 chr15 39435536 39435845 -61944676 - AluSx SINE Alu -3 309 1 739 194 0 0 chr15 39436060 39436194 -61944327 - FRAM SINE Alu -3 173 40 468 314 0 0 chr15 39436203 39436324 -61944197 - MIR3 SINE MIR -30 178 58 583 249 101 43 chr15 39436579 39436666 -61943855 + MIR SINE MIR 41 122 -140 237 83 0 0 chr15 39436666 39436702 -61943819 + (TTG)n Simple_repeat Simple_repeat 2 37 0 583 249 101 43 chr15 39436702 39436823 -61943698 + MIR SINE MIR 122 261 -1 255 156 89 0 chr15 39436791 39436836 -61943685 - L2 LINE L2 -3 3310 3262 * 2224 101 0 13 chr15 39437490 39437797 -61942724 + AluSc SINE Alu 3 305 -4 1972 154 3 3 chr15 39437808 39438100 -61942421 - AluSx SINE Alu -20 292 1 282 172 31 0 chr15 39438199 39438263 -61942258 + MLT1J2 LTR MaLR 69 134 -316 1769 226 15 25 chr15 39438400 39438622 -61941899 - MER82 DNA MER2_type 0 653 435 2368 85 7 0 chr15 39438622 39438917 -61941604 - AluSc SINE Alu -12 297 1 1769 226 15 25 chr15 39438917 39439097 -61941424 - MER82 DNA MER2_type -218 435 255 1995 135 0 7 chr15 39439097 39439386 -61941135 + AluSx SINE Alu 1 287 -25 396 92 0 62 chr15 39439388 39439453 -61941068 + LTR8 LTR ERV1 543 603 -88 511 171 9 9 chr15 39439494 39439605 -61940916 + GA-rich Low_complexity Low_complexity 2 112 0 1577 109 14 0 chr15 39439708 39439929 -61940592 - AluSq SINE Alu -89 224 1 717 96 0 39 chr15 39440145 39440249 -61940272 - AluY SINE Alu -218 100 1 2318 108 3 0 chr15 39440385 39440682 -61939839 - AluSq SINE Alu -15 298 1 30 0 0 0 chr15 39440949 39440979 -61939542 + AT_rich Low_complexity Low_complexity 1 30 0 197 323 156 10 chr15 39443080 39443176 -61937345 - MER5B DNA MER1_type 0 189 69 2360 109 3 0 chr15 39443395 39443699 -61936822 + AluSq SINE Alu 1 305 -8 2371 95 0 31 chr15 39444313 39444630 -61935891 + AluSg SINE Alu 1 307 -3 2376 113 0 0 chr15 39444664 39444965 -61935556 + AluSx SINE Alu 1 301 -11 225 0 0 0 chr15 39444965 39444990 -61935531 + (GA)n Simple_repeat Simple_repeat 2 26 0 2206 74 53 3 chr15 39445786 39446071 -61934450 - AluY SINE Alu -10 301 3 849 162 0 21 chr15 39446073 39446215 -61934306 - FLAM_C SINE Alu -3 140 2 1736 154 9 72 chr15 39446216 39446413 -61934108 - AluJo SINE Alu -13 299 91 2330 97 3 7 chr15 39446413 39446723 -61933798 + AluSx SINE Alu 3 311 -1 294 29 0 0 chr15 39446723 39446758 -61933763 + (TA)n Simple_repeat Simple_repeat 1 35 0 1736 154 9 72 chr15 39446758 39446878 -61933643 - AluJo SINE Alu -219 93 1 2526 204 151 96 chr15 39446878 39447048 -61933473 - L1 LINE L1 -1655 4491 4332 1712 167 39 0 chr15 39447048 39447329 -61933192 + AluJb SINE Alu 1 292 -20 2526 204 151 96 chr15 39447329 39447368 -61933153 - L1 LINE L1 -1814 4332 4297 1906 166 0 0 chr15 39447368 39447646 -61932875 + AluJb SINE Alu 14 291 -21 790 180 0 0 chr15 39447650 39447772 -61932749 - FLAM_C SINE Alu -11 122 1 2526 204 151 96 chr15 39447772 39447795 -61932726 - L1 LINE L1 -1851 4295 4275 1730 177 44 0 chr15 39447795 39447968 -61932553 - AluJb SINE Alu -5 307 114 183 42 0 0 chr15 39447968 39447992 -61932529 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1730 177 44 0 chr15 39447992 39448112 -61932409 - AluJb SINE Alu -198 114 1 2526 204 151 96 chr15 39448112 39448902 -61931619 - L1 LINE L1 -1871 4275 3530 2237 115 3 3 chr15 39448902 39449198 -61931323 + AluSx SINE Alu 1 296 -16 2526 204 151 96 chr15 39449198 39449273 -61931248 - L1 LINE L1 -2616 3530 3461 2702 24 0 3 chr15 39449273 39449569 -61930952 - AluYa5 SINE Alu -16 295 1 2526 204 151 96 chr15 39449569 39449644 -61930877 - L1 LINE L1 -2685 3461 3392 1451 213 72 4 chr15 39449644 39449921 -61930600 - AluJb SINE Alu -16 296 1 2526 204 151 96 chr15 39449921 39450090 -61930431 - L1 LINE L1 -2754 3392 3234 1509 114 111 94 chr15 39450090 39450387 -61930134 + AluJb SINE Alu 1 302 -10 2526 204 151 96 chr15 39450387 39450429 -61930092 - L1 LINE L1 -2912 3234 3196 2156 122 24 0 chr15 39450429 39450725 -61929796 + AluSx SINE Alu 3 305 -7 2526 204 151 96 chr15 39450725 39450996 -61929525 - L1 LINE L1 -2950 3196 2941 1639 182 0 40 chr15 39450996 39451292 -61929229 - AluJo SINE Alu -2 310 27 2480 81 0 3 chr15 39451302 39451611 -61928910 - AluY SINE Alu -3 308 1 2526 204 151 96 chr15 39451611 39451662 -61928859 - L1 LINE L1 -3213 2933 2553 802 211 56 0 chr15 39451663 39451824 -61928697 + FRAM SINE Alu 1 166 -10 1013 203 50 53 chr15 39451827 39451992 -61928529 - L1 LINE L1 -3593 2553 2388 625 205 34 0 chr15 39451992 39452109 -61928412 - FLAM_A SINE Alu -8 125 5 1013 203 50 53 chr15 39452109 39452264 -61928257 - L1 LINE L1 -3758 2388 2234 354 107 0 0 chr15 39452284 39452340 -61928181 + (CA)n Simple_repeat Simple_repeat 1 56 0 33 25 0 0 chr15 39452445 39452485 -61928036 + AT_rich Low_complexity Low_complexity 1 40 0 2048 140 0 3 chr15 39452508 39452801 -61927720 - AluSq SINE Alu -19 294 3 21 0 0 0 chr15 39452818 39452839 -61927682 + AT_rich Low_complexity Low_complexity 1 21 0 1865 171 0 31 chr15 39452930 39453252 -61927269 - AluJb SINE Alu 0 312 1 1971 145 6 25 chr15 39453255 39453572 -61926949 - AluSx SINE Alu -1 311 1 21 82 0 0 chr15 39453572 39453621 -61926900 + AT_rich Low_complexity Low_complexity 1 49 0 2367 108 0 7 chr15 39453704 39454011 -61926510 + AluSc SINE Alu 1 305 -4 1115 129 0 18 chr15 39454020 39454183 -61926338 + AluSx SINE Alu 1 160 -152 521 344 72 36 chr15 39454251 39454693 -61925828 - L1M4 LINE L1 -6061 481 24 239 317 58 8 chr15 39454709 39454829 -61925692 - L1 LINE L1 -1127 5019 4894 2091 124 0 7 chr15 39454830 39455121 -61925400 + AluSx SINE Alu 1 289 -23 489 230 0 0 chr15 39455131 39455218 -61925303 + FRAM SINE Alu 17 103 -73 1593 201 3 19 chr15 39455322 39455631 -61924890 - AluJo SINE Alu -4 308 5 1960 133 20 14 chr15 39455731 39455891 -61924630 - AluSx SINE Alu -16 296 132 2281 107 0 0 chr15 39455891 39456189 -61924332 - AluSc SINE Alu -9 300 3 1960 133 20 14 chr15 39456189 39456322 -61924199 - AluSx SINE Alu -180 132 1 1972 168 0 0 chr15 39463218 39463515 -61917006 - AluJo SINE Alu -15 297 1 740 222 25 6 chr15 39463515 39463677 -61916844 - MIR3 SINE MIR -11 197 33 2246 130 0 3 chr15 39464784 39465083 -61915438 - AluSx SINE Alu -14 298 1 857 167 0 0 chr15 39467511 39467637 -61912884 - FLAM_C SINE Alu -17 126 1 276 227 45 162 chr15 39468614 39468768 -61911753 - MIR SINE MIR -93 169 34 1867 157 26 26 chr15 39469817 39470123 -61910398 + AluJb SINE Alu 1 306 -6 399 121 0 52 chr15 39472753 39472846 -61907675 + L1MB2 LINE L1 6068 6167 -16 370 280 160 8 chr15 39472967 39473092 -61907429 + MIR SINE MIR 1 144 -118 646 245 133 49 chr15 39473119 39473585 -61906936 + MLT1F LTR MaLR 1 541 -1 1092 223 103 13 chr15 39473587 39473887 -61906634 - MER46C DNA MER2_type -11 327 1 362 248 48 29 chr15 39473887 39473992 -61906529 + MIR SINE MIR 156 262 0 1676 148 13 51 chr15 39475920 39476231 -61904290 + AluJo SINE Alu 14 312 0 745 131 4 2 chr15 39476274 39476535 -61903986 + AluSx SINE Alu 1 310 -2 317 289 45 94 chr15 39476780 39477046 -61903475 + L1ME3A LINE L1 5775 6027 -143 315 161 0 0 chr15 39477055 39477111 -61903410 + (CA)n Simple_repeat Simple_repeat 2 57 0 290 300 0 0 chr15 39477160 39477250 -61903271 + L1MC4 LINE L1 6614 6703 -1339 283 281 0 0 chr15 39477215 39477304 -61903217 - L1MC4 LINE L1 -1340 6702 6614 * 2359 115 0 13 chr15 39477311 39477488 -61903033 - AluSq SINE Alu -3 310 137 2271 108 0 25 chr15 39477488 39477804 -61902717 - AluSq SINE Alu -5 308 1 2359 115 0 13 chr15 39477804 39477940 -61902581 - AluSq SINE Alu -176 137 1 35 0 0 0 chr15 39478498 39478533 -61901988 + AT_rich Low_complexity Low_complexity 1 35 0 2039 138 3 0 chr15 39478533 39478829 -61901692 - AluSq SINE Alu -16 297 1 2114 114 41 0 chr15 39481814 39482104 -61898417 - AluSx SINE Alu -10 302 1 1886 162 3 13 chr15 39483065 39483374 -61897147 + AluJb SINE Alu 1 306 -6 1532 171 7 79 chr15 39483426 39483558 -61896963 + AluJo SINE Alu 1 141 -194 1423 224 0 14 chr15 39483558 39483844 -61896677 + AluJo SINE Alu 1 282 -30 2376 65 6 40 chr15 39483844 39484166 -61896355 + AluY SINE Alu 1 311 0 2087 108 10 24 chr15 39484168 39484463 -61896058 - AluSg SINE Alu -19 291 1 1532 171 7 79 chr15 39484463 39484683 -61895838 + AluJo SINE Alu 141 335 0 485 250 75 118 chr15 39484939 39484979 -61895542 + L1ME3A LINE L1 5619 5659 -511 1189 179 53 0 chr15 39484979 39485186 -61895335 + MER20 DNA MER1_type 2 219 0 485 250 75 118 chr15 39485186 39485545 -61894976 + L1ME3A LINE L1 5659 6001 -169 2292 101 0 7 chr15 39485939 39486247 -61894274 + AluSq SINE Alu 3 308 -5 430 255 9 19 chr15 39488719 39488825 -61891696 + MIR SINE MIR 48 152 -110 2269 105 0 10 chr15 39488830 39489135 -61891386 + AluSc SINE Alu 1 302 -7 1827 185 0 3 chr15 39489155 39489458 -61891063 + AluJb SINE Alu 1 302 -10 373 261 23 39 chr15 39494536 39494666 -61885855 + MER94 DNA DNA 7 134 0 571 180 99 0 chr15 39495226 39495370 -61885151 + MIR SINE MIR 93 252 -10 1705 121 143 0 chr15 39496373 39496646 -61883875 + AluJb SINE Alu 1 312 0 441 284 84 26 chr15 39499499 39499654 -61880867 + MIR3 SINE MIR 14 177 -31 215 207 86 17 chr15 39499706 39499764 -61880757 - MER5A DNA MER1_type -5 184 123 2048 130 0 26 chr15 39499764 39500071 -61880450 + AluJo SINE Alu 1 299 -13 1908 156 0 10 chr15 39500105 39500406 -61880115 - AluJb SINE Alu -14 298 1 652 101 28 46 chr15 39500465 39500574 -61879947 + U6 snRNA snRNA 1 107 0 195 129 0 0 chr15 39500575 39500606 -61879915 + (A)n Simple_repeat Simple_repeat 1 31 0 230 241 319 0 chr15 39501159 39501275 -61879246 - MIR3 SINE MIR -24 184 32 321 303 22 0 chr15 39501412 39501501 -61879020 - MIR3 SINE MIR -7 201 111 180 0 0 0 chr15 39503192 39503212 -61877309 + (A)n Simple_repeat Simple_repeat 1 20 0 245 313 0 21 chr15 39503218 39503314 -61877207 - MIR SINE MIR -67 195 102 298 265 26 43 chr15 39503396 39503463 -61877058 - MIR SINE MIR -30 232 166 1806 147 0 15 chr15 39503463 39503735 -61876786 - AluSg SINE Alu -40 270 3 298 265 26 43 chr15 39503735 39503784 -61876737 - MIR SINE MIR -96 166 118 2274 95 0 0 chr15 39503901 39504217 -61876304 + AluSg SINE Alu 1 316 0 1992 131 0 0 chr15 39504337 39504611 -61875910 + AluSx SINE Alu 39 312 0 517 307 213 31 chr15 39504780 39505067 -61875454 - L3 LINE CR1 -20 1557 1219 193 286 20 92 chr15 39505136 39505234 -61875287 - L3 LINE CR1 -542 1035 945 2097 114 10 3 chr15 39506018 39506315 -61874206 + AluSx SINE Alu 2 300 -12 770 302 36 9 chr15 39506424 39506646 -61873875 - MIR SINE MIR 0 262 35 382 208 50 40 chr15 39506716 39506817 -61873704 + L2 LINE L2 3163 3264 -8 1541 156 0 124 chr15 39507140 39507314 -61873207 + AluJo SINE Alu 1 114 -198 2230 104 0 16 chr15 39507314 39507621 -61872900 + AluSg SINE Alu 1 302 -8 1541 156 0 124 chr15 39507621 39507785 -61872736 + AluJo SINE Alu 114 297 -15 374 261 22 0 chr15 39508218 39508310 -61872211 + MIR3 SINE MIR 98 191 -17 261 0 0 0 chr15 39508573 39508602 -61871919 + (TG)n Simple_repeat Simple_repeat 2 30 0 2242 103 3 19 chr15 39510897 39511208 -61869313 - AluSg SINE Alu 0 310 5 597 173 0 0 chr15 39511244 39511348 -61869173 + U13 snRNA snRNA 1 104 0 284 204 0 19 chr15 39512347 39512401 -61868120 + L2 LINE L2 3201 3253 -19 * 474 254 42 68 chr15 39512368 39512563 -61867958 - MIR3 SINE MIR -50 212 20 539 260 202 36 chr15 39512692 39512915 -61867606 - MIR SINE MIR 0 262 3 878 226 35 26 chr15 39514679 39514909 -61865612 - MIR SINE MIR -2 260 29 297 0 0 0 chr15 39516231 39516264 -61864257 + (CAG)n Simple_repeat Simple_repeat 1 33 0 327 248 53 35 chr15 39516820 39516933 -61863588 - MIR3 SINE MIR -7 201 87 2214 91 7 19 chr15 39517172 39517481 -61863040 - AluSx SINE Alu 0 312 8 2029 140 3 7 chr15 39517484 39517784 -61862737 - AluSx SINE Alu -13 299 1 718 194 0 0 chr15 39518000 39518134 -61862387 - FRAM SINE Alu -3 173 40 433 306 0 0 chr15 39518143 39518264 -61862257 - MIR3 SINE MIR -30 178 58 535 246 78 28 chr15 39518519 39518606 -61861915 + MIR SINE MIR 41 122 -140 237 83 0 0 chr15 39518606 39518642 -61861879 + (TTG)n Simple_repeat Simple_repeat 2 37 0 535 246 78 28 chr15 39518642 39518733 -61861788 + MIR SINE MIR 122 228 -34 235 156 89 0 chr15 39518731 39518776 -61861745 - L2 LINE L2 -3 3310 3262 * 1970 138 3 10 chr15 39519427 39519724 -61860797 - AluSx SINE Alu -17 295 1 319 172 31 0 chr15 39519823 39519887 -61860634 + MLT1J2 LTR MaLR 69 134 -316 340 270 49 87 chr15 39519944 39520024 -61860497 + MLT1I LTR MaLR 242 324 -85 3186 202 10 46 chr15 39520024 39520246 -61860275 - MER82 DNA MER2_type 0 653 425 2220 96 10 0 chr15 39520246 39520538 -61859983 - AluSc SINE Alu -14 295 1 3186 202 10 46 chr15 39520538 39520724 -61859797 - MER82 DNA MER2_type -228 425 234 2403 94 0 0 chr15 39520724 39521021 -61859500 + AluSx SINE Alu 3 299 -13 3186 202 10 46 chr15 39521021 39521288 -61859233 - MER82 DNA MER2_type -419 234 1 340 270 49 87 chr15 39521288 39521424 -61859097 + MLT1I LTR MaLR 324 409 0 2409 92 0 0 chr15 39521689 39521992 -61858529 + AluY SINE Alu 1 303 -8 2095 112 10 3 chr15 39521994 39522289 -61858232 - AluSp SINE Alu -16 297 1 193 250 19 0 chr15 39522441 39522493 -61858028 - L2 LINE L2 -923 2391 2339 1266 149 0 10 chr15 39522493 39522688 -61857833 + AluJo SINE Alu 95 287 -25 333 237 52 21 chr15 39522789 39522886 -61857635 + L2 LINE L2 3209 3308 -5 1976 129 7 7 chr15 39522993 39523280 -61857241 + AluSx SINE Alu 1 287 -25 396 103 0 52 chr15 39523289 39523347 -61857174 + LTR8 LTR ERV1 549 603 -88 252 246 0 0 chr15 39523348 39523417 -61857104 + GA-rich Low_complexity Low_complexity 1 69 0 1352 112 93 0 chr15 39523560 39523765 -61856756 - AluSq SINE Alu -89 224 1 203 191 0 48 chr15 39523797 39523839 -61856682 - MER5A DNA MER1_type -85 104 65 2317 97 0 0 chr15 39523840 39524128 -61856393 - AluSg SINE Alu -22 288 1 2232 61 41 10 chr15 39524138 39524432 -61856089 - AluY SINE Alu -8 303 1 1503 156 0 35 chr15 39524519 39524775 -61855746 - AluJb SINE Alu -55 257 11 734 182 8 0 chr15 39524801 39524922 -61855599 - FLAM_C SINE Alu -20 123 2 883 158 24 91 chr15 39525206 39525239 -61855282 - L1MB7 LINE L1 -19 6165 6131 405 0 0 0 chr15 39525239 39525284 -61855237 + (TG)n Simple_repeat Simple_repeat 2 46 0 1591 133 75 50 chr15 39525284 39525562 -61854959 - AluJb SINE Alu -27 285 1 883 158 24 91 chr15 39525562 39525594 -61854927 - L1MB7 LINE L1 -52 6132 6099 2278 95 3 22 chr15 39525594 39525910 -61854611 - AluSq SINE Alu -3 310 1 883 158 24 91 chr15 39525910 39526096 -61854425 - L1MB7 LINE L1 -85 6099 5929 765 219 33 16 chr15 39526380 39526563 -61853958 - L1ME3 LINE L1 -10 6152 5967 365 214 0 87 chr15 39526889 39526992 -61853529 + MIR SINE MIR 47 140 -122 420 313 50 6 chr15 39527129 39527308 -61853213 + L3 LINE CR1 1382 1568 -9 827 195 52 0 chr15 39527687 39527841 -61852680 - FRAM SINE Alu -15 161 1 1332 126 0 16 chr15 39527938 39528129 -61852392 - AluSg/x SINE Alu -33 277 90 2054 126 3 3 chr15 39528797 39529091 -61851430 - AluSc SINE Alu -15 294 1 200 255 0 0 chr15 39530305 39530352 -61850169 + GA-rich Low_complexity Low_complexity 2 48 0 1591 211 103 40 chr15 39530664 39531224 -61849297 + L2 LINE L2 2457 3063 -250 1613 133 22 67 chr15 39531224 39531539 -61848982 + AluSx SINE Alu 1 301 -11 1591 211 103 40 chr15 39531539 39531748 -61848773 + L2 LINE L2 3063 3258 -55 1703 185 26 7 chr15 39531770 39532072 -61848449 - AluJb SINE Alu 0 312 5 681 234 0 58 chr15 39532083 39532254 -61848267 - AluJo SINE Alu -25 287 127 1415 227 52 43 chr15 39532347 39532810 -61847711 - MLT1C LTR MaLR 0 467 1 2325 108 0 0 chr15 39533948 39534253 -61846268 - AluSx SINE Alu -7 305 1 2066 150 16 0 chr15 39534379 39534685 -61845836 - AluSx SINE Alu -1 311 1 33 56 0 0 chr15 39534877 39534931 -61845590 + AT_rich Low_complexity Low_complexity 1 54 0 813 103 0 0 chr15 39535194 39535301 -61845220 - U6 snRNA snRNA 0 107 1 358 230 44 18 chr15 39535399 39535499 -61845022 - MIR SINE MIR -10 252 147 2268 110 3 16 chr15 39535499 39535816 -61844705 - AluSq SINE Alu 0 313 1 358 230 44 18 chr15 39535816 39535828 -61844693 - MIR SINE MIR -115 147 137 2344 101 0 0 chr15 39535841 39536149 -61844372 - AluSc SINE Alu -1 308 1 2161 82 3 73 chr15 39536812 39537127 -61843394 - AluSg SINE Alu -17 293 1 418 293 13 7 chr15 39537513 39537663 -61842858 + MIR SINE MIR 97 247 -15 2280 82 14 0 chr15 39538656 39538975 -61841546 - AluSp SINE Alu 0 323 1 1411 181 58 29 chr15 39539282 39539559 -61840962 - AluJb SINE Alu -26 286 2 580 198 62 62 chr15 39539616 39539665 -61840856 + MER104 DNA Tc2 16 64 -1834 2138 84 0 0 chr15 39539665 39539926 -61840595 - AluSc SINE Alu -14 295 35 580 198 62 62 chr15 39539926 39540038 -61840483 + MER104 DNA Tc2 63 177 -3 1811 125 55 14 chr15 39540909 39541198 -61839323 - AluSx SINE Alu -11 301 1 814 137 0 0 chr15 39541414 39541538 -61838983 - FRAM SINE Alu -15 161 38 2021 132 56 0 chr15 39542055 39542374 -61838147 + MER1B DNA MER1_type 1 337 0 2020 138 10 0 chr15 39542627 39542916 -61837605 - AluJb SINE Alu -18 294 3 1832 147 7 27 chr15 39543067 39543360 -61837161 + AluJb SINE Alu 1 287 -25 1780 127 4 4 chr15 39543870 39544122 -61836399 - AluSq SINE Alu -60 253 2 2184 119 0 7 chr15 39544269 39544579 -61835942 - AluSx SINE Alu -4 308 1 208 244 11 56 chr15 39546216 39546306 -61834215 + (CCCCAG)n Simple_repeat Simple_repeat 2 87 0 25 51 0 0 chr15 39546792 39546831 -61833690 + GC_rich Low_complexity Low_complexity 1 39 0 43350 34 22 4 chr15 39547456 39553484 -61827037 + L1PA3 LINE L1 20 6155 0 207 0 0 0 chr15 39553547 39553570 -61826951 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2226 111 3 0 chr15 39554360 39554658 -61825863 + AluSp SINE Alu 1 299 -14 2112 112 14 7 chr15 39554918 39555214 -61825307 - AluSq SINE Alu -15 298 1 1418 106 5 0 chr15 39555216 39555404 -61825117 - AluSg/x SINE Alu -12 298 110 972 186 20 10 chr15 39555787 39555991 -61824530 - AluSq SINE Alu -107 206 1 2040 94 0 0 chr15 39556074 39556328 -61824193 - AluSg SINE Alu -56 254 1 22 0 0 0 chr15 39556335 39556357 -61824164 + AT_rich Low_complexity Low_complexity 1 22 0 280 265 0 0 chr15 39556372 39556440 -61824081 - MER5A DNA MER1_type -113 76 9 2424 82 10 0 chr15 39556573 39556877 -61823644 - AluSq SINE Alu -6 307 1 802 188 32 11 chr15 39556877 39557063 -61823458 - L1MB7 LINE L1 -66 6118 5929 778 213 33 16 chr15 39557347 39557530 -61822991 - L1ME3 LINE L1 -10 6152 5967 365 214 0 87 chr15 39557856 39557959 -61822562 + MIR SINE MIR 47 140 -122 420 313 50 6 chr15 39558096 39558275 -61822246 + L3 LINE CR1 1382 1568 -9 810 188 52 0 chr15 39558654 39558808 -61821713 - FRAM SINE Alu -15 161 1 462 18 0 0 chr15 39558902 39558957 -61821564 + (TA)n Simple_repeat Simple_repeat 2 56 0 2231 94 0 26 chr15 39558957 39559265 -61821256 - AluSx SINE Alu -12 300 1 2174 109 3 3 chr15 39559932 39560226 -61820295 - AluSc SINE Alu -15 294 1 1732 217 88 33 chr15 39561784 39562350 -61818171 + L2 LINE L2 2457 3068 -245 1967 107 7 58 chr15 39562350 39562660 -61817861 + AluSx SINE Alu 1 294 -18 1732 217 88 33 chr15 39562660 39562863 -61817658 + L2 LINE L2 3068 3258 -55 1638 207 20 0 chr15 39562885 39563185 -61817336 - AluJb SINE Alu -2 310 5 758 211 0 58 chr15 39563196 39563367 -61817154 - AluJo SINE Alu -25 287 127 1392 229 52 43 chr15 39563460 39563923 -61816598 - MLT1C LTR MaLR 0 467 1 228 67 0 0 chr15 39564102 39564132 -61816389 + (A)n Simple_repeat Simple_repeat 1 30 0 264 30 0 0 chr15 39565080 39565113 -61815408 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 1947 133 7 31 chr15 39565113 39565407 -61815114 - AluSx SINE Alu -25 287 1 1981 132 16 36 chr15 39565574 39565878 -61814643 - AluSx SINE Alu -13 299 2 34 42 0 0 chr15 39566071 39566119 -61814402 + AT_rich Low_complexity Low_complexity 1 48 0 813 103 0 0 chr15 39566397 39566504 -61814017 - U6 snRNA snRNA 0 107 1 339 257 57 0 chr15 39566602 39566707 -61813814 - MIR SINE MIR -10 252 142 2344 91 3 3 chr15 39566713 39567009 -61813512 - AluSq SINE Alu -17 296 1 2417 98 0 0 chr15 39567023 39567330 -61813191 - AluSc SINE Alu -2 307 1 2212 90 3 48 chr15 39567985 39568295 -61812226 - AluSg SINE Alu -14 296 1 447 287 13 7 chr15 39568681 39568831 -61811690 + MIR SINE MIR 97 247 -15 1546 159 58 29 chr15 39570115 39570392 -61810129 - AluJo SINE Alu -26 286 2 298 140 105 0 chr15 39570444 39570501 -61810020 + HsTC2 DNA Tc2 2 64 -1834 649 90 0 3 chr15 39570501 39570714 -61809807 - AluSc SINE Alu -7 302 35 436 216 90 18 chr15 39570715 39570826 -61809695 + MER104 DNA Tc2 59 177 -3 1743 147 55 14 chr15 39571698 39571990 -61808531 - AluSx SINE Alu -8 304 1 2487 78 0 0 chr15 39572031 39572337 -61808184 + AluY SINE Alu 1 306 -5 724 157 0 0 chr15 39572522 39572643 -61807878 - FRAM SINE Alu -15 161 41 2465 81 0 0 chr15 39572809 39573118 -61807403 + AluY SINE Alu 1 309 -2 2028 132 56 0 chr15 39573498 39573817 -61806704 + MER1B DNA MER1_type 1 337 0 2002 140 11 0 chr15 39574070 39574355 -61806166 - AluJb SINE Alu -22 290 3 1749 181 0 17 chr15 39574506 39574804 -61805717 + AluJb SINE Alu 1 293 -19 2474 64 0 3 chr15 39575097 39575393 -61805128 + AluY SINE Alu 1 295 -16 1858 113 98 4 chr15 39575608 39575882 -61804639 - AluSq SINE Alu -12 301 2 2219 113 3 6 chr15 39576025 39576336 -61804185 - AluSx SINE Alu -2 310 1 225 0 0 0 chr15 39577661 39577686 -61802835 + (A)n Simple_repeat Simple_repeat 1 25 0 2304 61 0 0 chr15 39577688 39577993 -61802528 + AluY SINE Alu 3 307 0 214 200 7 103 chr15 39578376 39578521 -61802000 + (CCCCG)n Simple_repeat Simple_repeat 1 131 0 2284 92 3 3 chr15 39580414 39580708 -61799813 + AluSp SINE Alu 1 294 -19 2271 101 3 7 chr15 39580992 39581289 -61799232 - AluSq SINE Alu -17 296 1 2108 86 18 0 chr15 39581294 39581607 -61798914 - AluSx SINE Alu 0 318 1 914 71 9 0 chr15 39581751 39581864 -61798657 + AluSq/x SINE Alu 22 135 -177 1614 162 6 60 chr15 39581864 39582179 -61798342 + AluJb SINE Alu 1 298 -14 522 53 53 0 chr15 39582294 39582369 -61798152 - AluSg/x SINE Alu -17 292 214 855 133 0 73 chr15 39582369 39582534 -61797987 - AluSq SINE Alu -160 153 1 608 164 14 7 chr15 39582712 39582852 -61797669 + AluSc SINE Alu 1 141 -168 2333 86 7 0 chr15 39583270 39583562 -61796959 + AluY SINE Alu 1 294 -17 2224 114 0 3 chr15 39583627 39583925 -61796596 + AluSg SINE Alu 1 297 -13 329 245 75 0 chr15 39585118 39585212 -61795309 - HsTC2 DNA Tc2 0 1898 1798 2076 108 0 0 chr15 39585872 39586140 -61794381 - AluSx SINE Alu -30 282 15 2435 93 0 0 chr15 39586890 39587190 -61793331 + AluSc SINE Alu 1 300 -9 1274 164 134 22 chr15 39587237 39587505 -61793016 + AluJo SINE Alu 1 298 -14 1361 160 143 0 chr15 39587506 39587744 -61792777 + AluJb SINE Alu 24 295 -17 2214 97 0 7 chr15 39587820 39588110 -61792411 + AluSx SINE Alu 1 288 -24 2465 77 0 0 chr15 39588408 39588708 -61791813 + AluSq SINE Alu 1 300 -13 386 267 127 0 chr15 39588716 39588866 -61791655 + MIR SINE MIR 71 239 -23 197 306 0 32 chr15 39589207 39589269 -61791252 - MER5B DNA MER1_type -104 74 15 446 244 36 65 chr15 39589759 39589927 -61790594 - L2 LINE L2 0 3313 3151 459 225 126 9 chr15 39589931 39590042 -61790479 + FLAM_A SINE Alu 1 124 -9 2635 40 0 0 chr15 39590053 39590350 -61790171 + AluY SINE Alu 1 297 -14 2139 106 0 11 chr15 39590355 39590638 -61789883 + AluSg SINE Alu 1 280 -30 890 117 21 163 chr15 39590683 39590739 -61789782 + L1MB3 LINE L1 5444 5506 -677 2282 78 27 0 chr15 39590739 39591035 -61789486 + AluSp SINE Alu 1 304 -9 890 117 21 163 chr15 39591035 39591153 -61789368 + L1MB3 LINE L1 5506 5639 -544 2075 131 3 16 chr15 39591153 39591465 -61789056 + AluSx SINE Alu 1 308 -4 2116 136 7 3 chr15 39591470 39591779 -61788742 + AluSx SINE Alu 1 310 -2 2260 88 0 0 chr15 39591785 39592091 -61788430 + AluY SINE Alu 1 306 0 890 117 21 163 chr15 39592091 39592140 -61788381 + L1MB3 LINE L1 5594 5648 -535 758 220 105 31 chr15 39592143 39592334 -61788187 - MER6B DNA MER2_type -5 205 1 970 154 24 12 chr15 39592347 39592516 -61788005 + L1MB3 LINE L1 5679 5849 -334 2247 78 7 36 chr15 39592580 39592887 -61787634 + AluSq SINE Alu 1 298 -15 1801 162 3 3 chr15 39592898 39593195 -61787326 + AluJo SINE Alu 14 310 -2 278 176 88 77 chr15 39593195 39593286 -61787235 + L1MC/D LINE L1 5726 5817 -1991 2550 43 0 10 chr15 39593307 39593607 -61786914 - AluY SINE Alu -14 297 1 21 36 0 0 chr15 39593607 39593635 -61786886 + AT_rich Low_complexity Low_complexity 1 28 0 2378 79 3 13 chr15 39593734 39594037 -61786484 + AluY SINE Alu 1 300 -11 2470 74 3 0 chr15 39595007 39595306 -61785215 + AluSp SINE Alu 2 301 -12 2042 134 0 0 chr15 39596046 39596329 -61784192 - AluSx SINE Alu -29 283 1 221 405 82 9 chr15 39596641 39596873 -61783648 - L2 LINE L2 -342 2972 2724 790 107 90 0 chr15 39596874 39596996 -61783525 - MER85 DNA T2_type -6 133 1 2214 126 0 0 chr15 39597242 39597544 -61782977 - AluSq SINE Alu -11 302 1 278 302 40 40 chr15 39597569 39597695 -61782826 - MIR3 SINE MIR -48 160 35 1705 166 3 18 chr15 39597885 39598168 -61782353 + AluJo SINE Alu 15 293 -19 25 0 0 0 chr15 39598910 39598935 -61781586 + AT_rich Low_complexity Low_complexity 1 25 0 2340 102 3 6 chr15 39599844 39600157 -61780364 + AluSp SINE Alu 1 312 -1 2202 110 20 0 chr15 39600275 39600574 -61779947 + AluSg SINE Alu 5 309 -1 895 114 14 57 chr15 39600600 39600740 -61779781 + AluJo SINE Alu 1 134 -178 2205 87 7 7 chr15 39601525 39601813 -61778708 + AluSq SINE Alu 9 296 -17 354 198 0 6 chr15 39601968 39602040 -61778481 - AluSp SINE Alu -107 196 136 441 75 0 0 chr15 39602875 39602928 -61777593 - AluSg/x SINE Alu -142 170 118 2129 73 69 7 chr15 39603435 39603724 -61776797 - AluSp SINE Alu -6 307 1 501 209 310 6 chr15 39604365 39604523 -61775998 + MER3 DNA MER1_type 4 209 0 2127 81 10 52 chr15 39606177 39606487 -61774034 + AluY SINE Alu 1 297 -14 2000 154 0 3 chr15 39606495 39606788 -61773733 + AluSx SINE Alu 1 292 -20 1210 199 128 8 chr15 39607626 39607892 -61772629 + AluJo SINE Alu 1 298 -14 331 131 98 0 chr15 39607892 39607953 -61772568 + AluJo SINE Alu 58 124 -178 2531 64 0 0 chr15 39610740 39611038 -61769483 - AluY SINE Alu -13 298 1 1091 148 12 0 chr15 39611167 39611329 -61769192 + AluJo SINE Alu 134 297 -15 306 0 0 0 chr15 39611357 39611391 -61769130 + (A)n Simple_repeat Simple_repeat 1 34 0 2045 127 7 7 chr15 39611393 39611684 -61768837 + AluSx SINE Alu 1 291 -21 1071 250 120 20 chr15 39611687 39612147 -61768374 - L2 LINE L2 -1536 1778 1273 1597 197 65 34 chr15 39612188 39612263 -61768258 + Charlie4a DNA MER1_type 1 72 -1889 1731 169 3 3 chr15 39612263 39612568 -61767953 - AluJo SINE Alu 0 305 1 1597 197 65 34 chr15 39612568 39612907 -61767614 + Charlie4a DNA MER1_type 72 429 -79 383 162 0 14 chr15 39612911 39612985 -61767536 - AluSp/q SINE Alu 0 303 231 2151 117 3 3 chr15 39613086 39613376 -61767145 - AluSx SINE Alu -22 290 1 1242 101 16 16 chr15 39614102 39614291 -61766230 - L1MA4A LINE L1 -64 6239 6051 213 139 0 0 chr15 39614296 39614339 -61766182 + (A)n Simple_repeat Simple_repeat 1 43 0 612 261 194 11 chr15 39614547 39614920 -61765601 + L1MC4a LINE L1 5524 5649 -472 1254 111 0 0 chr15 39615051 39615213 -61765308 - AluSg/x SINE Alu -16 296 135 584 287 100 17 chr15 39615480 39615710 -61764811 + MIR SINE MIR 2 250 -12 1127 271 31 3 chr15 39615716 39615943 -61764578 + L1ME1 LINE L1 5816 6056 -110 2251 112 0 7 chr15 39615943 39616247 -61764274 - AluSx SINE Alu -10 302 1 1127 271 31 3 chr15 39616247 39616340 -61764181 + L1ME1 LINE L1 6056 6145 -21 1732 161 18 3 chr15 39616341 39616626 -61763895 - AluJb SINE Alu -23 289 1 2086 178 55 29 chr15 39616627 39616980 -61763541 - L1M4 LINE L1 -447 5731 5362 2246 88 7 0 chr15 39616980 39617288 -61763233 - AluSx SINE Alu 0 312 3 2086 178 55 29 chr15 39617288 39617389 -61763132 - L1M4 LINE L1 -816 5362 5265 1794 156 0 3 chr15 39617423 39617718 -61762803 + AluJb SINE Alu 1 294 -18 2166 121 0 0 chr15 39617725 39618038 -61762483 + AluSq SINE Alu 1 313 0 1369 93 25 5 chr15 39618040 39618244 -61762277 + L1MB8 LINE L1 5742 5949 -229 2058 88 4 4 chr15 39618252 39618563 -61761958 + AluSg SINE Alu 8 318 0 1191 123 0 0 chr15 39618563 39618734 -61761787 + AluSq SINE Alu 133 303 -10 1486 184 28 18 chr15 39618844 39619127 -61761394 - AluJb SINE Alu -26 286 1 851 143 8 0 chr15 39619130 39619263 -61761258 - AluJo SINE Alu -178 134 1 1022 230 22 9 chr15 39619353 39619579 -61760942 - MIR SINE MIR -21 241 13 2311 57 0 0 chr15 39620320 39620647 -61759874 + AluY SINE Alu 1 327 0 23 0 0 0 chr15 39620857 39620880 -61759641 + AT_rich Low_complexity Low_complexity 1 23 0 621 224 236 69 chr15 39621000 39621081 -61759440 - HAL1b LINE L1 -7 1341 1275 2249 73 7 0 chr15 39621081 39621369 -61759152 + AluSg1 SINE Alu 1 290 -19 621 224 236 69 chr15 39621369 39621719 -61758802 - HAL1b LINE L1 -73 1275 838 1557 93 0 0 chr15 39621723 39621928 -61758593 - AluSg/x SINE Alu -13 297 93 1924 114 11 4 chr15 39621983 39622256 -61758265 - AluSx SINE Alu -37 275 1 1333 207 3 39 chr15 39622659 39622968 -61757553 - AluJo SINE Alu -14 298 1 450 187 48 72 chr15 39622969 39623058 -61757463 + L1MB7 LINE L1 6023 6108 -76 1825 131 7 23 chr15 39623058 39623194 -61757327 + AluSx SINE Alu 1 138 -174 2006 106 3 7 chr15 39623194 39623487 -61757034 + AluSg1 SINE Alu 1 292 -17 1825 131 7 23 chr15 39623487 39623655 -61756866 + AluSx SINE Alu 138 300 -12 450 187 48 72 chr15 39623655 39623731 -61756790 + L1MB7 LINE L1 6108 6184 0 2073 105 7 3 chr15 39623868 39624174 -61756347 - AluSp SINE Alu -6 307 1 264 279 124 70 chr15 39624297 39624334 -61756187 + L2 LINE L2 1759 1793 -1521 1688 154 7 27 chr15 39624334 39624633 -61755888 + AluJo SINE Alu 5 297 -15 264 279 124 70 chr15 39624633 39624925 -61755596 + L2 LINE L2 1793 2106 -1208 1948 155 70 6 chr15 39625287 39625628 -61754893 - MLT1A1 LTR MaLR -2 363 1 2206 76 7 13 chr15 39625665 39625967 -61754554 + AluY SINE Alu 1 300 -11 2337 74 3 0 chr15 39626937 39627236 -61753285 + AluSp SINE Alu 2 301 -12 1923 134 0 0 chr15 39627976 39628259 -61752262 - AluSx SINE Alu -29 283 1 279 405 82 9 chr15 39628571 39628803 -61751718 - L2 LINE L2 -342 2972 2724 790 107 90 0 chr15 39628804 39628926 -61751595 - MER85 DNA T2_type -6 133 1 2046 126 3 0 chr15 39629172 39629473 -61751048 - AluSq SINE Alu -11 302 1 323 302 40 40 chr15 39629498 39629624 -61750897 - MIR3 SINE MIR -48 160 35 1599 170 3 18 chr15 39629814 39630097 -61750424 + AluJo SINE Alu 15 293 -19 25 0 0 0 chr15 39630838 39630863 -61749658 + AT_rich Low_complexity Low_complexity 1 25 0 2287 99 0 6 chr15 39631772 39632086 -61748435 + AluSp SINE Alu 1 312 -1 2079 110 20 0 chr15 39632204 39632503 -61748018 + AluSg SINE Alu 5 309 -1 838 114 14 57 chr15 39632529 39632669 -61747852 + AluJo SINE Alu 1 134 -178 2083 87 7 7 chr15 39633454 39633742 -61746779 + AluSq SINE Alu 9 296 -17 359 198 0 6 chr15 39633897 39633969 -61746552 - AluSp SINE Alu -107 196 136 441 75 0 0 chr15 39634804 39634857 -61745664 - AluSg/x SINE Alu -142 168 116 2013 80 69 0 chr15 39635364 39635653 -61744868 - AluSp SINE Alu -4 309 1 499 209 310 6 chr15 39636294 39636452 -61744069 + MER3 DNA MER1_type 4 209 0 221 378 54 0 chr15 39637152 39637263 -61743258 + MER5B DNA MER1_type 59 175 -3 2002 81 10 52 chr15 39638106 39638416 -61742105 + AluY SINE Alu 1 297 -14 1881 154 0 3 chr15 39638424 39638717 -61741804 + AluSx SINE Alu 1 292 -20 1225 203 128 8 chr15 39639555 39639821 -61740700 + AluJo SINE Alu 1 298 -4 335 131 98 0 chr15 39639821 39639882 -61740639 + FLAM_A SINE Alu 57 123 -10 2400 64 0 0 chr15 39642661 39642959 -61737562 - AluY SINE Alu -13 298 1 1023 148 12 0 chr15 39643088 39643250 -61737271 + FRAM SINE Alu 1 161 -15 306 0 0 0 chr15 39643278 39643312 -61737209 + (A)n Simple_repeat Simple_repeat 1 34 0 1926 127 7 7 chr15 39643314 39643605 -61736916 + AluSx SINE Alu 1 291 -21 1235 244 124 20 chr15 39643608 39644066 -61736455 - L2 LINE L2 -1536 1778 1273 1558 197 65 34 chr15 39644109 39644184 -61736337 + Charlie4a DNA MER1_type 1 72 -1889 1618 169 3 3 chr15 39644184 39644489 -61736032 - AluJo SINE Alu 0 305 1 1558 197 65 34 chr15 39644489 39644828 -61735693 + Charlie4a DNA MER1_type 72 429 -79 2237 69 0 16 chr15 39644831 39645137 -61735384 - AluY SINE Alu -9 302 2 1112 143 24 38 chr15 39645138 39645347 -61735174 - L1MB2 LINE L1 -42 6129 5924 3706 164 30 8 chr15 39645347 39645969 -61734552 - MER44D DNA MER2_type 0 605 98 1458 146 13 0 chr15 39645969 39646202 -61734319 + AluSq SINE Alu 1 236 -77 230 0 0 32 chr15 39646221 39646252 -61734269 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1785 138 39 0 chr15 39646498 39646780 -61733741 - AluSx SINE Alu -19 293 1 2134 109 3 0 chr15 39646784 39647087 -61733434 - AluSx SINE Alu -8 304 1 1838 241 60 47 chr15 39647101 39647740 -61732781 - HAL1 LINE L1 -245 2262 1616 1239 85 0 6 chr15 39647742 39647907 -61732614 - AluSc SINE Alu -11 298 135 2104 125 0 0 chr15 39647907 39648204 -61732317 - AluSc SINE Alu -12 297 1 2043 106 7 14 chr15 39648207 39648500 -61732021 - AluSx SINE Alu -21 291 1 1457 181 20 43 chr15 39648506 39648665 -61731856 - AluJo SINE Alu -20 292 142 1808 117 3 76 chr15 39648665 39648981 -61731540 - AluSg SINE Alu -17 293 1 1457 181 20 43 chr15 39648981 39649120 -61731401 - AluJo SINE Alu -170 142 1 783 226 92 0 chr15 39649122 39649339 -61731182 - HAL1 LINE L1 -939 1568 1332 29 0 0 0 chr15 39649342 39649371 -61731150 + AT_rich Low_complexity Low_complexity 1 29 0 2186 57 43 0 chr15 39649373 39649654 -61730867 - AluY SINE Alu -18 293 1 2029 128 0 0 chr15 39649662 39649951 -61730570 - AluSx SINE Alu -23 289 1 2143 119 0 0 chr15 39649955 39650267 -61730254 - AluSx SINE Alu 0 312 1 922 210 0 5 chr15 39650277 39650463 -61730058 - FRAM SINE Alu 0 176 1 2173 122 0 0 chr15 39650592 39650904 -61729617 - AluSx SINE Alu 0 312 1 474 243 70 92 chr15 39650915 39651032 -61729489 - HAL1 LINE L1 -1599 908 795 2336 90 0 0 chr15 39651032 39651333 -61729188 + AluY SINE Alu 1 301 -10 474 243 70 92 chr15 39651333 39651400 -61729121 - HAL1 LINE L1 -1712 795 728 180 271 17 0 chr15 39651417 39651476 -61729045 + L2 LINE L2 2896 2955 -317 356 322 96 46 chr15 39651498 39651892 -61728629 - MLT1K LTR MaLR -18 570 157 2327 50 10 10 chr15 39651895 39652197 -61728324 - AluY SINE Alu -9 302 1 2051 111 3 3 chr15 39652299 39652596 -61727925 - AluSp SINE Alu -16 297 1 1796 153 3 17 chr15 39652600 39652765 -61727756 - AluJo SINE Alu -15 297 136 2056 127 3 3 chr15 39652765 39653073 -61727448 - AluSx SINE Alu -4 308 1 1796 153 3 17 chr15 39653073 39653208 -61727313 - AluJo SINE Alu -176 136 1 887 79 0 0 chr15 39653210 39653324 -61727197 - AluY SINE Alu -197 114 1 629 101 0 0 chr15 39653376 39653465 -61727056 - AluJ/FRAM SINE Alu -8 304 216 269 310 92 0 chr15 39653504 39653591 -61726930 + L2 LINE L2 2615 2709 -605 425 312 51 0 chr15 39653615 39653753 -61726768 + MIR SINE MIR 48 192 -70 2478 47 0 0 chr15 39653766 39654067 -61726454 + AluY SINE Alu 1 301 -10 298 262 107 41 chr15 39654265 39654387 -61726134 + L2 LINE L2 2924 3053 -219 1847 110 20 33 chr15 39654624 39654759 -61725762 + AluSx SINE Alu 1 136 -176 2191 100 0 3 chr15 39654759 39655058 -61725463 + AluSx SINE Alu 3 300 -12 1847 110 20 33 chr15 39655058 39655223 -61725298 + AluSx SINE Alu 136 297 -15 234 160 0 0 chr15 39655265 39655315 -61725206 + GA-rich Low_complexity Low_complexity 2 51 0 1818 144 0 26 chr15 39655380 39655685 -61724836 + AluSq SINE Alu 1 297 -16 1947 115 4 0 chr15 39655685 39655964 -61724557 + AluSg SINE Alu 1 280 -30 803 176 52 0 chr15 39655977 39656130 -61724391 + AluJb SINE Alu 136 296 -16 297 75 0 0 chr15 39656130 39656170 -61724351 + (TA)n Simple_repeat Simple_repeat 2 41 0 1655 134 84 0 chr15 39656260 39656522 -61723999 - AluSg SINE Alu -26 284 1 213 39 0 0 chr15 39656573 39656599 -61723922 + (T)n Simple_repeat Simple_repeat 1 26 0 674 178 34 0 chr15 39657167 39657285 -61723236 + FLAM_C SINE Alu 2 123 -20 208 380 50 30 chr15 39658556 39658656 -61721865 - MIR3 SINE MIR -93 115 14 512 176 108 10 chr15 39658663 39658765 -61721756 + MER6B DNA MER2_type 4 115 -161 1255 130 8 20 chr15 39658765 39659004 -61721517 - AluJb SINE Alu -9 303 1 565 224 0 9 chr15 39659004 39659111 -61721410 + MER6B DNA MER2_type 102 207 -3 2168 109 3 13 chr15 39659688 39660000 -61720521 - AluSq SINE Alu 0 313 5 221 217 22 0 chr15 39660016 39660062 -61720459 + L2 LINE L2 3215 3261 -11 198 315 146 0 chr15 39662281 39662370 -61718151 - MIR SINE MIR -67 141 40 227 327 168 9 chr15 39662416 39662523 -61717998 - MIR SINE MIR -43 219 96 2213 104 7 0 chr15 39663126 39663424 -61717097 - AluSx SINE Alu -12 300 1 1656 104 61 32 chr15 39663578 39663858 -61716663 - AluSx SINE Alu -19 293 6 1803 121 32 0 chr15 39663877 39664159 -61716362 - AluSx SINE Alu -15 297 7 1905 140 0 23 chr15 39665938 39666246 -61714275 - AluJb SINE Alu -11 301 1 415 259 86 11 chr15 39666846 39667000 -61713521 + MIR3 SINE MIR 41 204 -4 600 313 40 0 chr15 39672937 39673113 -61707408 + MIR SINE MIR 2 184 -78 1677 190 10 52 chr15 39673117 39673523 -61706998 + L1MB7 LINE L1 5514 5902 -282 528 65 9 157 chr15 39673537 39673593 -61706928 + L1MB7 LINE L1 6086 6120 -64 2361 119 0 0 chr15 39673593 39673904 -61706617 + AluSx SINE Alu 2 312 0 528 65 9 157 chr15 39673904 39673955 -61706566 + L1MB7 LINE L1 6120 6177 -7 421 255 105 13 chr15 39675537 39675690 -61704831 + MIR SINE MIR 10 176 -86 880 159 0 0 chr15 39675722 39675854 -61704667 - FLAM_C SINE Alu -1 132 1 270 276 133 19 chr15 39677039 39677144 -61703377 + MIR SINE MIR 44 160 -102 210 71 0 0 chr15 39677748 39677776 -61702745 + (GGA)n Simple_repeat Simple_repeat 2 29 0 2503 94 3 0 chr15 39677977 39678286 -61702235 + AluSq SINE Alu 2 311 -2 2052 132 67 14 chr15 39678509 39678865 -61701656 + THE1C LTR MaLR 1 375 0 183 229 0 42 chr15 39678977 39679025 -61701496 + MIR SINE MIR 20 65 -143 290 246 200 0 chr15 39679145 39679255 -61701266 + MIR SINE MIR 119 250 -12 458 211 155 28 chr15 39680225 39680367 -61700154 + MIR SINE MIR 47 206 -56 2327 104 0 3 chr15 39681390 39681687 -61698834 - AluSg SINE Alu -13 297 2 2087 145 27 69 chr15 39681696 39682103 -61698418 + MLT1B LTR MaLR 1 390 0 869 132 7 49 chr15 39683337 39683481 -61697040 + FRAM SINE Alu 29 166 -10 242 283 121 0 chr15 39683529 39683628 -61696893 - Charlie8 DNA MER1_type -2303 114 4 273 257 55 73 chr15 39684176 39684285 -61696236 - L2 LINE L2 -27 3245 3139 2006 121 10 41 chr15 39685137 39685451 -61695070 - AluSx SINE Alu -8 304 1 2408 96 0 0 chr15 39685908 39686209 -61694312 - AluSx SINE Alu -11 301 1 187 237 0 0 chr15 39687256 39687294 -61693227 - L2 LINE L2 -9 3304 3267 2611 59 0 0 chr15 39687367 39687673 -61692848 - AluY SINE Alu -5 306 1 882 172 53 0 chr15 39688149 39688300 -61692221 - AluJo/FRAM SINE Alu -7 295 137 1221 96 102 0 chr15 39688300 39688466 -61692055 - AluSc SINE Alu -14 295 113 2090 103 0 14 chr15 39688566 39688858 -61691663 - AluY SINE Alu -23 288 1 1405 55 0 0 chr15 39688872 39689036 -61691485 - AluY SINE Alu -20 291 128 2124 64 35 18 chr15 39689042 39689325 -61691196 - AluSg SINE Alu -22 288 1 1715 127 16 0 chr15 39690374 39690627 -61689894 + AluSx SINE Alu 42 298 -14 749 259 156 36 chr15 39690646 39691137 -61689384 + MLT1H LTR MaLR 5 589 -6 2296 96 7 7 chr15 39691931 39692232 -61688289 - AluSg SINE Alu -9 301 1 2269 95 14 0 chr15 39692394 39692688 -61687833 + AluSp SINE Alu 1 298 -15 2091 132 7 0 chr15 39693607 39693896 -61686625 - AluJb SINE Alu -17 295 5 2237 115 3 7 chr15 39694060 39694356 -61686165 - AluSx SINE Alu -17 295 1 1527 166 87 85 chr15 39694372 39694656 -61685865 + MER119 DNA MER1_type 130 417 -166 2465 84 3 6 chr15 39694656 39694967 -61685554 - AluSg SINE Alu 0 310 1 1527 166 87 85 chr15 39694967 39695128 -61685393 + MER119 DNA MER1_type 417 576 -7 527 232 49 14 chr15 39695417 39695559 -61684962 + MIR SINE MIR 59 205 -57 2499 79 0 0 chr15 39696438 39696741 -61683780 - AluY SINE Alu -8 303 1 453 282 103 0 chr15 39696748 39696922 -61683599 + L1M4 LINE L1 3587 3778 -2368 216 67 0 0 chr15 39696927 39696957 -61683564 + (A)n Simple_repeat Simple_repeat 1 30 0 1528 199 24 20 chr15 39697033 39697325 -61683196 + AluJo SINE Alu 1 293 -19 1976 144 0 27 chr15 39697332 39697654 -61682867 + AluSx SINE Alu 1 312 0 839 155 0 40 chr15 39697716 39697864 -61682657 - FLAM_C SINE Alu -1 142 1 2209 109 0 10 chr15 39697942 39698254 -61682267 - AluSg SINE Alu -1 309 1 2169 140 0 0 chr15 39698259 39698567 -61681954 - AluSx SINE Alu -4 308 1 584 226 112 60 chr15 39698605 39698919 -61681602 - L1ME3A LINE L1 -208 5962 5633 420 272 93 19 chr15 39699357 39699614 -61680907 - L1MC4a LINE L1 -1902 5906 5631 21 36 0 0 chr15 39699824 39699852 -61680669 + AT_rich Low_complexity Low_complexity 1 28 0 2267 107 0 3 chr15 39699940 39700240 -61680281 - AluSx SINE Alu -13 299 1 215 286 79 64 chr15 39700252 39700392 -61680129 + MIR SINE MIR 18 159 -103 1421 151 0 10 chr15 39700778 39700984 -61679537 + AluJo SINE Alu 1 204 -108 32 0 0 0 chr15 39700987 39701019 -61679502 + AT_rich Low_complexity Low_complexity 1 32 0 1333 131 4 72 chr15 39701098 39701334 -61679187 - AluSg/x SINE Alu -8 304 85 819 244 48 19 chr15 39705162 39705371 -61675150 + MIR SINE MIR 34 248 -14 2289 108 0 3 chr15 39706722 39707017 -61673504 - AluSg SINE Alu -16 294 1 2355 88 0 7 chr15 39707380 39707675 -61672846 - AluSc SINE Alu -16 293 1 245 231 200 10 chr15 39708088 39708187 -61672334 - MIR SINE MIR -91 117 38 2092 121 10 26 chr15 39711611 39711918 -61668603 + AluSg SINE Alu 1 302 -8 2235 101 7 26 chr15 39711920 39712227 -61668294 + AluSg SINE Alu 3 303 -7 826 168 0 0 chr15 39712233 39712352 -61668169 + FLAM_C SINE Alu 1 119 -24 1541 171 20 30 chr15 39712432 39712730 -61667791 + AluJo SINE Alu 1 295 -17 2280 86 20 13 chr15 39712834 39713135 -61667386 + AluSq SINE Alu 1 303 -10 1472 75 16 5 chr15 39713198 39713384 -61667137 + AluY SINE Alu 1 188 -123 187 97 161 0 chr15 39714588 39714619 -61665902 - L2 LINE L2 -858 2456 2421 2231 114 0 0 chr15 39714940 39715238 -61665283 - AluY SINE Alu -13 298 1 911 178 22 43 chr15 39715266 39715451 -61665070 - AluJb SINE Alu -2 310 130 2145 110 4 0 chr15 39715919 39716229 -61664292 + AluSg SINE Alu 1 311 0 2035 120 0 0 chr15 39716395 39716662 -61663859 + AluSx SINE Alu 1 267 -45 2496 58 7 0 chr15 39716682 39716974 -61663547 - AluY SINE Alu -17 294 1 1597 164 35 0 chr15 39717193 39717449 -61663072 + AluJo SINE Alu 1 265 -47 1621 173 43 0 chr15 39717542 39717820 -61662701 - AluJb SINE Alu -22 290 1 1470 160 26 77 chr15 39718522 39718835 -61661686 + AluJo SINE Alu 1 297 -15 2509 72 0 3 chr15 39719686 39719993 -61660528 - AluY SINE Alu -5 306 1 2206 109 3 0 chr15 39720087 39720380 -61660141 - AluSg SINE Alu -16 294 1 2309 110 0 3 chr15 39720458 39720768 -61659753 + AluSc SINE Alu 1 309 0 2136 139 3 3 chr15 39720820 39721130 -61659391 - AluSx SINE Alu -2 310 1 2084 132 7 0 chr15 39721231 39721527 -61658994 + AluSx SINE Alu 1 298 -14 827 252 159 39 chr15 39721546 39722037 -61658484 + MLT1H LTR MaLR 5 589 -6 2271 100 3 7 chr15 39722831 39723131 -61657390 - AluSg1 SINE Alu -10 299 1 2252 95 14 0 chr15 39723294 39723588 -61656933 + AluSp SINE Alu 1 298 -15 2067 132 7 0 chr15 39724507 39724796 -61655725 - AluJb SINE Alu -17 295 5 2219 115 3 7 chr15 39724960 39725256 -61655265 - AluSx SINE Alu -17 295 1 1655 163 87 87 chr15 39725272 39725557 -61654964 + MER119 DNA MER1_type 130 417 -166 2442 84 3 6 chr15 39725557 39725868 -61654653 - AluSg SINE Alu 0 310 1 1655 163 87 87 chr15 39725868 39726029 -61654492 + MER119 DNA MER1_type 416 576 -7 470 232 49 14 chr15 39726318 39726460 -61654061 + MIR SINE MIR 59 205 -57 2486 79 0 0 chr15 39727339 39727642 -61652879 - AluY SINE Alu -8 303 1 231 282 103 0 chr15 39727649 39727823 -61652698 + L1ME LINE L1 3587 3778 -2368 216 67 0 0 chr15 39727828 39727858 -61652663 + (A)n Simple_repeat Simple_repeat 1 30 0 1491 199 24 20 chr15 39727934 39728226 -61652295 + AluJo SINE Alu 1 293 -19 1953 144 0 27 chr15 39728233 39728555 -61651966 + AluSx SINE Alu 1 312 0 824 132 0 69 chr15 39728621 39728765 -61651756 - AluJo SINE Alu -178 134 1 2001 123 0 7 chr15 39728846 39729156 -61651365 - AluSx SINE Alu 0 308 1 2250 99 3 3 chr15 39729189 39729492 -61651029 + AluY SINE Alu 1 303 -8 1301 101 6 0 chr15 39729492 39729670 -61650851 + AluY SINE Alu 133 311 0 2018 140 0 10 chr15 39729925 39730232 -61650289 - AluJb SINE Alu -8 304 1 1081 128 39 54 chr15 39730244 39730447 -61650074 - AluJo SINE Alu -27 285 86 456 259 139 27 chr15 39730465 39730766 -61649755 + L1ME LINE L1 4377 4711 -1435 265 213 113 0 chr15 39730933 39731013 -61649508 + L1P LINE L1 4919 5007 -1139 229 277 0 20 chr15 39731342 39731443 -61649078 + L1ME LINE L1 5304 5402 -957 563 89 0 0 chr15 39731464 39731543 -61648978 + AluSp/q SINE Alu 224 302 -11 465 236 36 50 chr15 39731543 39731683 -61648838 + L1ME LINE L1 5393 5530 -632 2340 106 0 0 chr15 39731694 39731997 -61648524 - AluSx SINE Alu -9 303 1 1383 167 42 77 chr15 39732008 39732149 -61648372 - AluJo SINE Alu -31 281 154 2305 79 7 7 chr15 39732149 39732460 -61648061 - AluSq SINE Alu 0 313 1 1383 167 42 77 chr15 39732460 39732605 -61647916 - AluJo SINE Alu -158 154 5 2044 127 3 3 chr15 39732701 39733000 -61647521 - AluSx SINE Alu -13 299 1 429 141 0 13 chr15 39733170 39733248 -61647273 + FLAM_A SINE Alu 31 107 -35 230 228 53 9 chr15 39733466 39733580 -61646941 + (TA)n Simple_repeat Simple_repeat 1 119 0 1626 135 87 0 chr15 39734646 39734912 -61645609 - AluSx SINE Alu -23 289 1 1066 88 0 7 chr15 39734912 39735048 -61645473 - AluSq/x SINE Alu -178 135 1 21 0 0 0 chr15 39735117 39735138 -61645383 + AT_rich Low_complexity Low_complexity 1 21 0 1746 161 11 0 chr15 39735505 39735779 -61644742 - AluJb SINE Alu -35 277 1 2329 75 14 3 chr15 39735903 39736196 -61644325 - AluSq SINE Alu -17 296 1 2165 111 0 10 chr15 39736871 39737168 -61643353 - AluSc SINE Alu -15 294 1 2289 99 3 0 chr15 39738221 39738523 -61641998 - AluSg SINE Alu -7 303 1 2520 72 3 0 chr15 39738823 39739129 -61641392 - AluY SINE Alu -4 307 1 479 172 95 0 chr15 39739196 39739312 -61641209 - MER5A DNA MER1_type -2 187 61 237 132 0 0 chr15 39739312 39739350 -61641171 + (T)n Simple_repeat Simple_repeat 1 38 0 593 184 0 0 chr15 39739391 39739489 -61641032 - AluJ/FLAM SINE Alu -213 99 2 288 206 73 0 chr15 39739491 39739559 -61640962 - MER5A DNA MER1_type -116 73 1 2415 83 3 0 chr15 39739604 39739905 -61640616 + AluSp SINE Alu 1 302 -11 1673 136 0 19 chr15 39740000 39740088 -61640433 + AluSx SINE Alu 49 137 -175 1941 139 0 35 chr15 39740088 39740405 -61640116 + AluSx SINE Alu 1 306 -6 1673 136 0 19 chr15 39740405 39740573 -61639948 + AluSx SINE Alu 137 300 -12 1032 148 5 42 chr15 39740573 39740762 -61639759 - AluJo SINE Alu -130 182 1 2104 122 0 3 chr15 39740769 39741057 -61639464 - AluSx SINE Alu -19 293 7 447 182 202 0 chr15 39741057 39741156 -61639365 - HAL1 LINE L1 -752 1755 1637 584 98 12 0 chr15 39741157 39741239 -61639282 - AluSg SINE Alu -11 299 217 1000 122 0 0 chr15 39741239 39741370 -61639151 - AluSg SINE Alu -179 131 1 792 217 71 0 chr15 39741372 39741570 -61638951 - HAL1 LINE L1 -866 1641 1430 761 185 73 20 chr15 39741570 39741721 -61638800 + FRAM SINE Alu 1 157 -19 2072 135 30 0 chr15 39741756 39742059 -61638462 - AluSx SINE Alu 0 312 1 1888 129 20 20 chr15 39742066 39742369 -61638152 - AluSx SINE Alu -3 309 7 362 151 43 108 chr15 39742378 39742471 -61638050 - HAL1 LINE L1 -1122 1385 1299 668 211 0 0 chr15 39742498 39742612 -61637909 - FRAM SINE Alu -23 153 40 2437 80 0 3 chr15 39742629 39742941 -61637580 - AluY SINE Alu 0 311 1 2242 108 0 16 chr15 39742943 39743257 -61637264 - AluSc SINE Alu 0 309 1 241 219 172 42 chr15 39743263 39743501 -61637020 - HAL1 LINE L1 -1210 1297 1029 2284 102 0 35 chr15 39743621 39743934 -61636587 - AluSq SINE Alu -11 302 1 929 148 0 0 chr15 39743934 39744069 -61636452 - AluSq/x SINE Alu -178 135 1 1388 179 13 84 chr15 39744506 39744814 -61635707 + AluJo SINE Alu 1 286 -26 2343 104 7 0 chr15 39744974 39745281 -61635240 - AluSq SINE Alu -4 309 1 499 97 0 14 chr15 39745283 39745355 -61635166 - AluJ/FRAM SINE Alu -16 296 226 351 278 57 66 chr15 39745923 39746074 -61634447 - MIR SINE MIR -6 256 106 2100 126 6 31 chr15 39746074 39746391 -61634130 + AluSp SINE Alu 1 309 -4 351 278 57 66 chr15 39746391 39746451 -61634070 - MIR SINE MIR -156 106 47 184 290 14 58 chr15 39746886 39746955 -61633566 + MIR SINE MIR 49 114 -148 26 50 0 0 chr15 39746989 39747029 -61633492 + AT_rich Low_complexity Low_complexity 1 40 0 2541 62 7 0 chr15 39747190 39747497 -61633024 - AluY SINE Alu -2 309 1 2145 135 0 0 chr15 39747507 39747810 -61632711 - AluSx SINE Alu -9 303 1 680 223 112 60 chr15 39747848 39748162 -61632359 - L1ME3A LINE L1 -208 5962 5633 490 269 93 19 chr15 39748600 39748857 -61631664 - L1MC4a LINE L1 -1902 5906 5631 21 36 0 0 chr15 39749067 39749095 -61631426 + AT_rich Low_complexity Low_complexity 1 28 0 2249 107 0 3 chr15 39749183 39749483 -61631038 - AluSx SINE Alu -13 299 1 1405 151 0 10 chr15 39750021 39750227 -61630294 + AluJo SINE Alu 1 204 -108 28 0 0 0 chr15 39750230 39750258 -61630263 + AT_rich Low_complexity Low_complexity 1 28 0 514 214 112 31 chr15 39750258 39750341 -61630180 + MER112 DNA MER1_type 49 124 -136 1954 129 3 68 chr15 39750341 39750520 -61630001 - AluSx SINE Alu -8 304 154 2166 104 30 3 chr15 39750520 39750818 -61629703 - AluY SINE Alu -5 306 1 1954 129 3 68 chr15 39750818 39750963 -61629558 - AluSx SINE Alu -158 154 1 514 214 112 31 chr15 39750963 39751075 -61629446 + MER112 DNA MER1_type 124 260 0 396 233 62 88 chr15 39751098 39751180 -61629341 + MIR SINE MIR 41 124 -138 2125 115 0 0 chr15 39751180 39751468 -61629053 - AluSg SINE Alu 0 310 23 396 233 62 88 chr15 39751468 39751578 -61628943 + MIR SINE MIR 124 228 -34 349 303 35 35 chr15 39751577 39751719 -61628802 - L2 LINE L2 0 3313 3172 * 227 200 160 0 chr15 39752219 39752269 -61628252 + L2 LINE L2 3256 3313 0 1863 179 10 0 chr15 39752338 39752645 -61627876 - AluJb SINE Alu -2 310 1 23 33 0 0 chr15 39752689 39752719 -61627802 + AT_rich Low_complexity Low_complexity 1 30 0 491 284 70 82 chr15 39752834 39753165 -61627356 - L1MC4a LINE L1 -457 5664 5338 2178 93 21 7 chr15 39753660 39753951 -61626570 + AluSx SINE Alu 1 295 -17 1614 64 0 81 chr15 39753952 39754187 -61626334 + AluY SINE Alu 1 216 -95 2245 104 3 3 chr15 39754269 39754576 -61625945 + AluSp SINE Alu 1 307 -6 466 187 48 72 chr15 39754713 39754789 -61625732 - L1MB7 LINE L1 0 6184 6108 1945 131 7 23 chr15 39754789 39754957 -61625564 - AluSx SINE Alu -12 300 138 2129 106 3 7 chr15 39754957 39755250 -61625271 - AluSg1 SINE Alu -17 292 1 1945 131 7 23 chr15 39755250 39755386 -61625135 - AluSx SINE Alu -174 138 1 466 187 48 72 chr15 39755386 39755475 -61625046 - L1MB7 LINE L1 -76 6108 6023 1442 204 3 39 chr15 39755476 39755785 -61624736 + AluJo SINE Alu 1 298 -14 2047 114 11 4 chr15 39756188 39756461 -61624060 + AluSx SINE Alu 1 275 -37 1644 93 0 0 chr15 39756516 39756721 -61623800 + AluSg/x SINE Alu 95 299 -13 366 219 27 75 chr15 39757011 39757075 -61623446 + HAL1b LINE L1 1203 1269 -79 2379 73 7 0 chr15 39757075 39757363 -61623158 - AluSg1 SINE Alu -19 290 1 366 219 27 75 chr15 39757363 39757444 -61623077 + HAL1b LINE L1 1269 1341 -7 23 0 0 0 chr15 39757564 39757587 -61622934 + AT_rich Low_complexity Low_complexity 1 23 0 2442 57 0 0 chr15 39757797 39758124 -61622397 - AluY SINE Alu 0 327 1 923 230 22 9 chr15 39758865 39759091 -61621430 + MIR SINE MIR 13 241 -21 904 143 8 0 chr15 39759181 39759314 -61621207 + AluJo SINE Alu 1 134 -178 1599 184 28 18 chr15 39759317 39759600 -61620921 + AluJb SINE Alu 1 286 -26 1260 123 0 0 chr15 39759710 39759881 -61620640 - AluSq SINE Alu -10 303 133 291 54 0 0 chr15 39759881 39759918 -61620603 + (TTG)n Simple_repeat Simple_repeat 3 39 0 2216 88 4 0 chr15 39759919 39760191 -61620330 - AluSg SINE Alu -30 280 8 1380 93 25 5 chr15 39760199 39760403 -61620118 - L1MB8 LINE L1 -229 5949 5742 2288 121 0 0 chr15 39760405 39760718 -61619803 - AluSq SINE Alu 0 313 1 1912 156 0 3 chr15 39760725 39761020 -61619501 - AluJb SINE Alu -18 294 1 2109 178 55 29 chr15 39761054 39761155 -61619366 + L1M4 LINE L1 5265 5362 -816 2445 78 7 0 chr15 39761155 39761463 -61619058 + AluSx SINE Alu 3 312 0 2109 178 55 29 chr15 39761463 39761816 -61618705 + L1M4 LINE L1 5362 5731 -447 1732 161 18 3 chr15 39761817 39762102 -61618419 + AluJb SINE Alu 1 289 -23 1127 271 31 3 chr15 39762103 39762196 -61618325 - L1ME1 LINE L1 -21 6145 6056 2251 112 0 7 chr15 39762196 39762500 -61618021 + AluSx SINE Alu 1 302 -10 1127 271 31 3 chr15 39762500 39762727 -61617794 - L1ME1 LINE L1 -110 6056 5816 584 287 100 17 chr15 39762733 39762963 -61617558 - MIR SINE MIR -12 250 2 1254 111 0 0 chr15 39763230 39763392 -61617129 + AluSg/x SINE Alu 133 294 -16 612 261 194 11 chr15 39763523 39763896 -61616625 - L1MC4a LINE L1 -472 5649 5524 213 139 0 0 chr15 39764104 39764147 -61616374 + (T)n Simple_repeat Simple_repeat 1 43 0 1242 101 16 16 chr15 39764152 39764341 -61616180 + L1MA4A LINE L1 6051 6239 -64 2222 121 3 3 chr15 39765067 39765373 -61615148 + AluSx SINE Alu 1 306 -6 189 0 0 0 chr15 39765491 39765512 -61615009 + (T)n Simple_repeat Simple_repeat 1 21 0 1803 116 0 0 chr15 39765527 39765760 -61614761 - AluSg SINE Alu -77 233 1 2114 92 33 0 chr15 39765774 39766075 -61614446 - AluSp SINE Alu 0 310 1 1771 167 22 0 chr15 39767498 39767774 -61612747 + AluJb SINE Alu 1 282 -30 1527 158 13 77 chr15 39768026 39768336 -61612185 - AluJb SINE Alu -22 290 1 1641 160 77 7 chr15 39768440 39768727 -61611794 - AluJo SINE Alu -5 307 1 2350 102 0 3 chr15 39769361 39769664 -61610857 - AluSg SINE Alu -8 302 1 204 40 0 0 chr15 39769801 39769826 -61610695 + (T)n Simple_repeat Simple_repeat 1 25 0 2033 138 3 49 chr15 39769837 39770026 -61610495 - AluSx SINE Alu -2 310 141 2483 87 0 0 chr15 39770026 39770337 -61610184 - AluY SINE Alu 0 311 1 2033 138 3 49 chr15 39770337 39770472 -61610049 - AluSx SINE Alu -171 141 1 2088 133 3 10 chr15 39770474 39770767 -61609754 - AluSx SINE Alu -21 291 1 4325 143 64 49 chr15 39770767 39771107 -61609414 - L1MA8 LINE L1 -1 6290 5956 1463 203 7 4 chr15 39771107 39771388 -61609133 - AluJo SINE Alu -30 282 1 4325 143 64 49 chr15 39771388 39771425 -61609096 - L1MA8 LINE L1 -335 5956 5921 825 91 0 0 chr15 39771425 39771535 -61608986 - HY1 scRNA scRNA -2 110 1 4325 143 64 49 chr15 39771535 39772110 -61608411 - L1MA8 LINE L1 -370 5921 5323 2128 137 3 6 chr15 39772110 39772423 -61608098 - AluSq SINE Alu -1 312 1 1133 109 15 55 chr15 39772436 39772618 -61607903 - AluSg/x SINE Alu 0 310 135 2176 117 7 10 chr15 39772618 39772792 -61607729 - AluSx SINE Alu -5 307 133 2200 127 7 0 chr15 39772792 39773100 -61607421 - AluSx SINE Alu -2 310 1 2176 117 7 10 chr15 39773100 39773233 -61607288 - AluSx SINE Alu -179 133 1 1133 109 15 55 chr15 39773233 39773251 -61607270 - AluSg/x SINE Alu -175 135 118 2523 75 0 3 chr15 39774152 39774457 -61606064 - AluSq SINE Alu -9 304 1 230 257 199 35 chr15 39774887 39775058 -61605463 - MER112 DNA MER1_type -2 258 60 29 0 0 0 chr15 39775083 39775112 -61605409 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr15 39775819 39775839 -61604682 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 189 0 0 0 chr15 39776322 39776343 -61604178 + (T)n Simple_repeat Simple_repeat 1 21 0 191 367 42 8 chr15 39777329 39777449 -61603072 - L2 LINE L2 -586 2728 2605 371 274 137 8 chr15 39777629 39777746 -61602775 + MIR3 SINE MIR 11 142 -66 2376 95 0 3 chr15 39777787 39778091 -61602430 - AluSg SINE Alu -7 303 1 26 30 0 0 chr15 39778295 39778328 -61602193 + AT_rich Low_complexity Low_complexity 1 33 0 862 244 78 0 chr15 39779506 39779711 -61600810 + MER58A DNA MER1_type 4 224 0 21 0 0 0 chr15 39781067 39781088 -61599433 + AT_rich Low_complexity Low_complexity 1 21 0 2163 127 0 13 chr15 39782147 39782447 -61598074 + AluSx SINE Alu 1 296 -16 2080 115 4 0 chr15 39782447 39782726 -61597795 + AluSg SINE Alu 1 280 -30 873 192 48 0 chr15 39782739 39782893 -61597628 + AluJb SINE Alu 136 300 -12 300 53 0 0 chr15 39782893 39782931 -61597590 + (TA)n Simple_repeat Simple_repeat 2 39 0 873 192 48 0 chr15 39782931 39782943 -61597578 + AluJb SINE Alu 300 310 -2 1805 130 84 0 chr15 39783021 39783283 -61597238 - AluSg SINE Alu -26 284 1 222 37 0 0 chr15 39783334 39783361 -61597160 + (T)n Simple_repeat Simple_repeat 1 27 0 693 178 34 0 chr15 39783929 39784047 -61596474 + FLAM_C SINE Alu 2 123 -20 209 380 50 30 chr15 39785318 39785418 -61595103 - MIR3 SINE MIR -93 115 14 480 176 108 10 chr15 39785425 39785527 -61594994 + MER6B DNA MER2_type 4 115 -161 1356 130 8 20 chr15 39785527 39785766 -61594755 - AluJb SINE Alu -9 303 1 539 224 0 9 chr15 39785766 39785873 -61594648 + MER6B DNA MER2_type 102 207 -3 2322 109 3 13 chr15 39786450 39786762 -61593759 - AluSq SINE Alu 0 313 5 219 217 22 0 chr15 39786778 39786824 -61593697 + L2 LINE L2 3215 3261 -11 201 315 146 0 chr15 39789043 39789132 -61591389 - MIR SINE MIR -67 141 40 227 327 168 9 chr15 39789178 39789285 -61591236 - MIR SINE MIR -43 219 96 2362 104 7 0 chr15 39789888 39790186 -61590335 - AluSx SINE Alu -12 300 1 1788 104 61 32 chr15 39790340 39790620 -61589901 - AluSx SINE Alu -19 293 6 1943 115 30 20 chr15 39790626 39790921 -61589600 - AluSx SINE Alu -8 304 7 2056 140 0 23 chr15 39792701 39793009 -61587512 - AluJb SINE Alu -11 301 1 415 259 86 11 chr15 39793609 39793763 -61586758 + MIR3 SINE MIR 41 204 -4 600 313 40 0 chr15 39799700 39799876 -61580645 + MIR SINE MIR 2 184 -78 1677 190 10 52 chr15 39799880 39800286 -61580235 + L1MB7 LINE L1 5514 5902 -282 528 65 9 157 chr15 39800300 39800356 -61580165 + L1MB7 LINE L1 6086 6120 -64 2361 119 0 0 chr15 39800356 39800667 -61579854 + AluSx SINE Alu 2 312 0 528 65 9 157 chr15 39800667 39800718 -61579803 + L1MB7 LINE L1 6120 6177 -7 421 255 105 13 chr15 39802300 39802453 -61578068 + MIR SINE MIR 10 176 -86 880 159 0 0 chr15 39802485 39802617 -61577904 - FLAM_C SINE Alu -1 132 1 270 276 133 19 chr15 39803802 39803907 -61576614 + MIR SINE MIR 44 160 -102 210 71 0 0 chr15 39804511 39804539 -61575982 + (GGA)n Simple_repeat Simple_repeat 2 29 0 2503 94 3 0 chr15 39804740 39805049 -61575472 + AluSq SINE Alu 2 311 -2 2052 132 67 14 chr15 39805272 39805628 -61574893 + THE1C LTR MaLR 1 375 0 183 229 0 42 chr15 39805740 39805788 -61574733 + MIR SINE MIR 20 65 -143 290 246 200 0 chr15 39805908 39806018 -61574503 + MIR SINE MIR 119 250 -12 458 211 155 28 chr15 39806988 39807130 -61573391 + MIR SINE MIR 47 206 -56 2327 104 0 3 chr15 39808153 39808450 -61572071 - AluSg SINE Alu -13 297 2 2087 145 27 69 chr15 39808459 39808866 -61571655 + MLT1B LTR MaLR 1 390 0 869 132 7 49 chr15 39810100 39810244 -61570277 + FRAM SINE Alu 29 166 -10 242 283 121 0 chr15 39810292 39810391 -61570130 - Charlie8 DNA MER1_type -2303 114 4 273 257 55 73 chr15 39810939 39811048 -61569473 - L2 LINE L2 -27 3245 3139 2006 121 10 41 chr15 39811900 39812214 -61568307 - AluSx SINE Alu -8 304 1 2408 96 0 0 chr15 39812671 39812972 -61567549 - AluSx SINE Alu -11 301 1 187 237 0 0 chr15 39814019 39814057 -61566464 - L2 LINE L2 -9 3304 3267 2637 52 0 0 chr15 39814130 39814436 -61566085 - AluY SINE Alu -5 306 1 1853 140 32 3 chr15 39814914 39815063 -61565458 - AluJb SINE Alu -19 293 150 2119 93 61 0 chr15 39815063 39815341 -61565180 - AluSc SINE Alu -14 295 1 1853 140 32 3 chr15 39815341 39815476 -61565045 - AluJb SINE Alu -162 150 1 1608 153 0 4 chr15 39815649 39815885 -61564636 + AluJb SINE Alu 70 304 -8 2222 123 0 16 chr15 39816648 39816965 -61563556 + AluSx SINE Alu 1 312 0 2162 136 3 0 chr15 39817006 39817315 -61563206 - AluSx SINE Alu -2 310 1 548 91 23 11 chr15 39818050 39818138 -61562383 + AluJ/FRAM SINE Alu 224 312 0 809 265 56 8 chr15 39818260 39818509 -61562012 - MIR SINE MIR 0 262 2 2461 171 68 6 chr15 39818717 39819202 -61561319 + MLT1F1 LTR MaLR 3 517 -50 354 275 170 0 chr15 39819535 39819683 -61560838 + MER5A DNA MER1_type 4 183 -6 2241 90 6 50 chr15 39820275 39820598 -61559923 + AluSq SINE Alu 1 309 -4 288 273 216 0 chr15 39821263 39821351 -61559170 - MIR SINE MIR -65 143 37 222 161 45 152 chr15 39821895 39822007 -61558514 + L2 LINE L2 3173 3272 -41 250 26 51 0 chr15 39822009 39822048 -61558473 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 405 240 58 16 chr15 39822055 39822176 -61558345 - L2 LINE L2 -29 3284 3159 292 210 157 127 chr15 39822181 39822277 -61558244 - MIR SINE MIR 0 262 170 2481 87 3 3 chr15 39822277 39822589 -61557932 - AluSx SINE Alu 0 312 1 292 210 157 127 chr15 39822589 39822713 -61557808 - MIR SINE MIR -92 170 36 1230 135 82 14 chr15 39822719 39822926 -61557595 + MER58A DNA MER1_type 1 221 -3 427 188 42 21 chr15 39824111 39824207 -61556314 - MIR SINE MIR -75 187 90 2354 93 0 3 chr15 39824342 39824642 -61555879 - AluSq SINE Alu -13 300 2 2178 95 25 3 chr15 39824963 39825248 -61555273 - AluSx SINE Alu -21 291 1 2391 78 7 0 chr15 39825707 39826002 -61554519 + AluSq SINE Alu 1 297 -16 361 244 24 12 chr15 39828257 39828339 -61552182 + L2 LINE L2 3156 3238 -34 529 250 94 26 chr15 39829754 39829946 -61550575 + MIR SINE MIR 25 229 -33 2002 146 3 3 chr15 39830232 39830533 -61549988 - AluSx SINE Alu -11 301 1 691 302 57 74 chr15 39830743 39831217 -61549304 - L2 LINE L2 0 3272 2807 284 259 32 63 chr15 39831472 39831630 -61548891 + MIR3 SINE MIR 46 198 -10 573 310 16 0 chr15 39832208 39832395 -61548126 + L2 LINE L2 2504 2693 -621 2333 110 0 0 chr15 39832567 39832868 -61547653 - AluSx SINE Alu -11 301 1 476 202 150 6 chr15 39832985 39833154 -61547367 - L1MC4a LINE L1 -400 5774 5675 771 249 179 27 chr15 39833172 39833660 -61546861 + L2 LINE L2 2752 3309 -4 252 88 0 0 chr15 39833937 39833971 -61546550 + tRNA-Val-GTG tRNA tRNA 2 35 -41 3055 139 12 48 chr15 39834346 39834863 -61545658 + MER41E LTR ERV1 15 512 0 25 0 0 0 chr15 39836551 39836576 -61543945 + AT_rich Low_complexity Low_complexity 1 25 0 286 356 59 0 chr15 39839500 39839635 -61540886 + MIR SINE MIR 47 189 -73 1029 151 6 0 chr15 39840881 39841053 -61539468 - MER5A DNA MER1_type 0 189 17 180 275 14 14 chr15 39841817 39841886 -61538635 + MIR SINE MIR 71 139 -123 240 225 16 77 chr15 39841958 39842140 -61538381 + A-rich Low_complexity Low_complexity 4 174 0 21 0 0 0 chr15 39842385 39842406 -61538115 + AT_rich Low_complexity Low_complexity 1 21 0 744 204 0 40 chr15 39843411 39843587 -61536934 + AluSq SINE Alu 2 170 -143 2100 126 0 16 chr15 39844067 39844377 -61536144 + AluSq SINE Alu 1 305 -8 1903 139 7 20 chr15 39845058 39845360 -61535161 - AluJo SINE Alu -14 298 1 807 304 8 40 chr15 39846156 39846235 -61534286 - LTR16A LTR ERVL 0 450 370 2119 104 34 24 chr15 39846235 39846533 -61533988 + AluSx SINE Alu 1 301 -11 807 304 8 40 chr15 39846533 39846706 -61533815 - LTR16A LTR ERVL -80 370 206 318 95 0 0 chr15 39846855 39846897 -61533624 + AluY SINE Alu 1 42 -258 1807 71 0 5 chr15 39846897 39847121 -61533400 + AluY SINE Alu 79 301 -10 516 279 87 0 chr15 39847129 39847312 -61533209 - MIR SINE MIR -44 218 20 2057 116 0 36 chr15 39847739 39848042 -61532479 - AluSx SINE Alu -20 292 1 1368 136 10 5 chr15 39848887 39849086 -61531435 + AluJb SINE Alu 1 200 -112 688 204 26 26 chr15 39849087 39849239 -61531282 - AluJo SINE Alu -47 265 114 1858 139 0 55 chr15 39850568 39850760 -61529761 - AluJb SINE Alu -20 292 122 2321 102 3 3 chr15 39850760 39851064 -61529457 + AluSp SINE Alu 1 304 -9 1858 139 0 55 chr15 39851064 39851180 -61529341 - AluJb SINE Alu -190 122 1 1827 179 114 14 chr15 39851269 39851689 -61528832 + MLT1C LTR MaLR 6 467 0 2172 143 8 30 chr15 39851862 39852225 -61528296 - MSTC LTR MaLR 0 428 74 1346 140 19 125 chr15 39852225 39852546 -61527975 - AluSq SINE Alu -17 296 10 844 205 12 12 chr15 39852546 39852712 -61527809 - L1ME LINE L1 -5616 454 289 777 137 23 8 chr15 39852755 39852886 -61527635 - AluJb SINE Alu -178 134 2 664 289 40 18 chr15 39852899 39853124 -61527397 - L1ME LINE L1 -5830 240 11 23 0 0 0 chr15 39853150 39853173 -61527348 + AT_rich Low_complexity Low_complexity 1 23 0 1616 157 32 21 chr15 39853586 39853867 -61526654 + AluSg1 SINE Alu 9 292 -17 21 0 0 0 chr15 39854266 39854287 -61526234 + AT_rich Low_complexity Low_complexity 1 21 0 775 71 0 0 chr15 39854513 39854611 -61525910 + AluSg/x SINE Alu 200 297 -15 711 286 91 5 chr15 39856539 39856759 -61523762 - MIR SINE MIR -19 243 5 814 105 18 94 chr15 39859640 39859752 -61520769 - L1MA5 LINE L1 -80 6220 6124 2383 88 0 7 chr15 39859752 39860058 -61520463 + AluY SINE Alu 2 305 -6 814 105 18 94 chr15 39860058 39860116 -61520405 - L1MA5 LINE L1 -176 6124 6063 674 44 11 0 chr15 39860564 39860654 -61519867 + (TG)n Simple_repeat Simple_repeat 2 92 0 202 353 128 0 chr15 39862505 39862607 -61517914 - MIR SINE MIR -60 148 34 25 51 0 0 chr15 39865040 39865079 -61515442 + AT_rich Low_complexity Low_complexity 1 39 0 2100 148 0 6 chr15 39865788 39866099 -61514422 - AluSx SINE Alu -3 309 1 326 238 221 0 chr15 39866502 39866624 -61513897 - MIR SINE MIR -12 250 102 202 299 0 0 chr15 39866918 39866985 -61513536 + A-rich Low_complexity Low_complexity 1 67 0 1601 151 12 81 chr15 39867017 39867349 -61513172 - AluJb SINE Alu -3 309 1 228 273 0 0 chr15 39868211 39868266 -61512255 + MIR3 SINE MIR 151 205 -3 1319 77 0 0 chr15 39868530 39868686 -61511835 - AluSp SINE Alu -24 289 134 2227 101 0 10 chr15 39868686 39868857 -61511664 - AluSx SINE Alu -8 304 136 2257 89 20 0 chr15 39868857 39869150 -61511371 - AluY SINE Alu -12 299 1 2227 101 0 10 chr15 39869150 39869285 -61511236 - AluSx SINE Alu -176 136 1 17466 32 0 0 chr15 39869540 39872670 -61507851 + L1PA4 LINE L1 3025 6155 0 261 0 0 0 chr15 39872683 39872712 -61507809 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 246 154 0 0 chr15 39872985 39873024 -61507497 + Alu SINE Alu 1 39 -261 582 126 0 0 chr15 39873024 39873111 -61507410 + AluJ/FRAM SINE Alu 226 312 0 393 308 31 39 chr15 39873966 39874096 -61506425 - MIR SINE MIR -89 173 45 2441 76 7 3 chr15 39874179 39874483 -61506038 - AluSp SINE Alu -8 305 1 197 343 108 20 chr15 39874591 39874693 -61505828 - L2 LINE L2 -9 3263 3153 1982 133 10 10 chr15 39874695 39875003 -61505518 + AluSx SINE Alu 1 308 -4 224 360 75 25 chr15 39875283 39875561 -61504960 - L2 LINE L2 -416 2898 2607 319 127 55 0 chr15 39875787 39875842 -61504679 - L1MCa LINE L1 -4363 2063 2006 2114 121 0 0 chr15 39875850 39876131 -61504390 - AluSg SINE Alu -27 283 3 378 345 10 12 chr15 39876133 39876330 -61504191 - MIR SINE MIR -53 209 16 2163 50 15 12 chr15 39876358 39876617 -61503904 - L1PA8 LINE L1 -4 6168 5909 387 211 145 40 chr15 39876703 39876855 -61503666 - L1MC5 LINE L1 -48 7913 7746 1633 158 28 11 chr15 39877689 39877974 -61502547 - AluJo SINE Alu -11 301 12 355 336 29 0 chr15 39878045 39878149 -61502372 - L2 LINE L2 -2 3270 3164 1604 118 95 23 chr15 39879088 39879350 -61501171 - AluSx SINE Alu -28 284 4 1456 152 141 0 chr15 39879569 39879663 -61500858 + AluSc SINE Alu 2 81 -228 279 0 0 0 chr15 39879663 39879694 -61500827 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1456 152 141 0 chr15 39879694 39879868 -61500653 + AluSc SINE Alu 81 308 -1 1251 102 68 0 chr15 39880017 39880193 -61500328 + AluSg SINE Alu 2 189 -121 991 102 121 32 chr15 39880307 39880464 -61500057 - AluSg/x SINE Alu -37 273 103 613 148 218 0 chr15 39880498 39880599 -61499922 + AluSq/x SINE Alu 3 125 -188 291 113 0 0 chr15 39880600 39880653 -61499868 + (TA)n Simple_repeat Simple_repeat 1 53 0 186 305 51 0 chr15 39881004 39881063 -61499458 - L3 LINE CR1 -24 1553 1492 709 277 52 0 chr15 39881077 39881232 -61499289 - MER91A DNA MER1_type -22 174 12 1349 290 78 53 chr15 39881250 39881576 -61498945 - L3 LINE CR1 -100 1477 1160 2632 49 0 0 chr15 39881576 39881883 -61498638 - AluY SINE Alu -4 307 1 1349 290 78 53 chr15 39881883 39881930 -61498591 - L3 LINE CR1 -417 1160 1116 2205 114 0 7 chr15 39881930 39882229 -61498292 - AluSx SINE Alu -15 297 1 1349 290 78 53 chr15 39882229 39882564 -61497957 - L3 LINE CR1 -461 1116 751 190 367 23 31 chr15 39882741 39882869 -61497652 - L2 LINE L2 -212 3060 2934 236 358 46 46 chr15 39883126 39883235 -61497286 + L2 LINE L2 3155 3263 -9 377 250 78 0 chr15 39884018 39884146 -61496375 + L1ME LINE L1 5352 5489 -675 3442 194 44 52 chr15 39884152 39885075 -61495446 + L1M4 LINE L1 4456 5371 -775 254 272 25 0 chr15 39885082 39885163 -61495358 - LTR19A LTR ERV1 -3 483 401 1211 123 0 0 chr15 39885226 39885388 -61495133 - AluSp SINE Alu -12 301 140 2182 122 3 10 chr15 39885391 39885694 -61494827 - AluSx SINE Alu -11 301 1 356 306 20 20 chr15 39886279 39886426 -61494095 - HERVR LTR ERV1 -279 7113 6967 778 139 8 8 chr15 39887832 39887954 -61492567 + Tigger1 DNA MER2_type 2296 2417 -1 888 182 117 9 chr15 39887956 39888187 -61492334 + Tigger6 DNA MER2_type 1339 1594 -3 661 313 102 36 chr15 39888289 39888730 -61491791 + L3b LINE CR1 1111 1580 -3 222 37 0 0 chr15 39889011 39889038 -61491483 + (CTG)n Simple_repeat Simple_repeat 3 29 0 1453 294 0 97 chr15 39889949 39890279 -61490242 - AluSx SINE Alu -3 299 2 299 29 0 0 chr15 39890281 39890315 -61490206 - LTR8 LTR ERV1 -111 580 547 761 216 62 11 chr15 39890317 39890493 -61490028 - AluJo SINE Alu -13 299 115 4188 194 48 32 chr15 39890495 39890791 -61489730 - L1 LINE L1 -3129 4436 4146 2297 99 0 7 chr15 39890791 39891095 -61489426 - AluSc SINE Alu -7 302 1 4188 194 48 32 chr15 39891095 39892049 -61488472 - L1 LINE L1 -3419 4146 3140 1701 158 56 3 chr15 39892049 39892333 -61488188 - AluSx SINE Alu -12 300 2 4188 194 48 32 chr15 39892333 39892645 -61487876 - L1 LINE L1 -4425 3140 2835 1989 166 24 18 chr15 39892645 39892983 -61487538 + MER2 DNA MER2_type 2 341 -3 4200 193 225 33 chr15 39892983 39894230 -61486291 - L1 LINE L1 -5542 1947 461 189 0 0 0 chr15 39894318 39894339 -61486182 + (T)n Simple_repeat Simple_repeat 1 21 0 350 252 207 9 chr15 39894393 39894504 -61486017 + MER5A DNA MER1_type 57 189 0 290 180 82 0 chr15 39894512 39894573 -61485948 - MER5B DNA MER1_type 0 178 113 239 127 109 0 chr15 39895561 39895616 -61484905 - L1MA9 LINE L1 -38 6274 6214 225 313 50 0 chr15 39895770 39895850 -61484671 + MIR SINE MIR 125 208 -54 189 250 0 0 chr15 39895910 39895954 -61484567 - L2 LINE L2 -1278 2036 1993 1452 137 0 0 chr15 39896673 39896878 -61483643 - AluSx SINE Alu -15 295 91 2001 119 14 3 chr15 39896978 39897263 -61483258 + AluSq SINE Alu 12 299 -14 760 159 33 60 chr15 39898758 39898909 -61481612 - Tigger2 DNA MER2_type -10 2708 2562 192 97 0 0 chr15 39898911 39898942 -61481579 + (CA)n Simple_repeat Simple_repeat 2 32 0 824 168 0 0 chr15 39898942 39899067 -61481454 - AluSx SINE Alu -26 284 160 742 130 0 0 chr15 39899067 39899167 -61481354 - AluSx SINE Alu -207 105 6 9653 109 23 9 chr15 39899167 39900547 -61479974 - Tigger2 DNA MER2_type -145 2573 1174 2181 132 0 0 chr15 39900854 39901143 -61479378 - AluSx SINE Alu -23 289 1 325 348 0 0 chr15 39901539 39901631 -61478890 + MIR SINE MIR 33 124 -84 2194 110 7 0 chr15 39902618 39902908 -61477613 + AluSx SINE Alu 5 296 -16 2513 75 0 3 chr15 39902911 39903217 -61477304 + AluY SINE Alu 1 305 -6 545 319 24 0 chr15 39903217 39903386 -61477135 + MIR3 SINE MIR 31 203 -5 201 247 91 0 chr15 39903430 39903507 -61477014 + MER5A DNA MER1_type 10 100 -78 4333 137 101 4 chr15 39903895 39904626 -61475895 + Tigger6a DNA MER2_type 2 803 -280 4670 121 35 33 chr15 39904650 39905338 -61475183 + Tigger1 DNA MER2_type 1 692 -1726 3579 111 61 20 chr15 39905338 39905470 -61475051 - MER1A DNA MER1_type -2173 527 402 2113 126 17 3 chr15 39905470 39905763 -61474758 - AluSx SINE Alu -15 297 1 3579 111 61 20 chr15 39905763 39906136 -61474385 - MER1A DNA MER1_type -2298 402 1 4670 121 35 33 chr15 39906136 39906197 -61474324 + Tigger1 DNA MER2_type 692 751 -1667 964 115 5 105 chr15 39906203 39906403 -61474118 + Tigger1 DNA MER2_type 2143 2322 -96 232 253 38 0 chr15 39907184 39907263 -61473258 + (TA)n Simple_repeat Simple_repeat 2 83 0 520 279 124 30 chr15 39907520 39907753 -61472768 - MIR SINE MIR -2 260 6 187 279 16 0 chr15 39907802 39907863 -61472658 - MIR SINE MIR -6 256 195 641 259 122 35 chr15 39907992 39908386 -61472135 + L1ME LINE L1 5261 5688 -474 186 340 0 0 chr15 39909274 39909327 -61471194 + L2 LINE L2 2922 2974 -340 270 319 0 0 chr15 39909945 39910017 -61470504 - MER63C DNA MER1_type 0 931 860 2025 127 3 49 chr15 39910071 39910395 -61470126 - AluSx SINE Alu -3 309 1 4300 165 87 13 chr15 39910405 39911304 -61469217 - L1MB4 LINE L1 0 6180 5215 2437 168 108 33 chr15 39911320 39911398 -61469123 - MER63C DNA MER1_type -192 868 797 1686 157 44 4 chr15 39911398 39911672 -61468849 - AluJb SINE Alu -27 285 1 2437 168 108 33 chr15 39911672 39912166 -61468355 - MER63C DNA MER1_type -263 797 253 319 269 90 0 chr15 39912197 39912275 -61468246 + L2 LINE L2 3147 3231 -41 263 222 42 0 chr15 39912270 39912342 -61468179 + MIR SINE MIR 77 151 -111 * 525 118 0 0 chr15 39912466 39912542 -61467979 + AluJ/FRAM SINE Alu 225 300 -12 29 28 0 0 chr15 39912660 39912696 -61467825 + AT_rich Low_complexity Low_complexity 1 36 0 2217 124 0 3 chr15 39912874 39913225 -61467296 - AluSq SINE Alu 0 350 1 1987 140 7 0 chr15 39913485 39913788 -61466733 + AluSx SINE Alu 1 305 0 324 134 45 2 chr15 39914772 39914999 -61465522 + AluJb SINE Alu 4 295 -7 2141 125 3 3 chr15 39915095 39915398 -61465123 - AluSx SINE Alu -9 303 1 1835 178 0 20 chr15 39916397 39916700 -61463821 + AluJo SINE Alu 1 297 -15 661 200 89 58 chr15 39917031 39917073 -61463448 - MIR SINE MIR -64 198 159 2424 100 0 0 chr15 39917073 39917384 -61463137 - AluSq SINE Alu -2 311 1 661 200 89 58 chr15 39917384 39917531 -61462990 - MIR SINE MIR -103 159 3 1849 74 0 9 chr15 39917752 39917983 -61462538 + AluY SINE Alu 73 301 -10 193 290 97 0 chr15 39918301 39918363 -61462158 - L2 LINE L2 -2 3311 3244 1053 203 0 20 chr15 39918506 39918703 -61461818 - AluJo SINE Alu -91 221 29 2413 82 3 0 chr15 39918772 39919076 -61461445 + AluSq SINE Alu 1 305 -8 550 309 86 33 chr15 39919958 39920320 -61460201 + L2 LINE L2 1932 2312 -1002 240 163 0 0 chr15 39920616 39920659 -61459862 + GA-rich Low_complexity Low_complexity 4 46 0 234 356 0 23 chr15 39920860 39920947 -61459574 + L2 LINE L2 3168 3252 -20 2030 128 50 7 chr15 39921153 39921450 -61459071 + AluSx SINE Alu 1 310 -2 1871 159 7 3 chr15 39922150 39922440 -61458081 - AluJb SINE Alu -21 291 1 197 345 119 0 chr15 39922699 39922783 -61457738 - L2 LINE L2 -19 3253 3160 2326 88 3 0 chr15 39922785 39923093 -61457428 - AluY SINE Alu -2 309 1 2072 139 0 7 chr15 39923272 39923575 -61456946 + AluSx SINE Alu 1 301 -11 1190 221 33 11 chr15 39923618 39923889 -61456632 + AluJo SINE Alu 14 290 -22 2522 65 7 0 chr15 39923894 39924200 -61456321 + AluSp SINE Alu 1 308 -5 36 53 0 0 chr15 39924204 39924261 -61456260 + AT_rich Low_complexity Low_complexity 1 57 0 13961 119 42 18 chr15 39924453 39925955 -61454566 - Tigger1 DNA MER2_type -1 2417 836 2386 125 45 38 chr15 39925955 39926337 -61454184 + MSTA LTR MaLR 1 388 -40 2308 86 36 0 chr15 39926337 39926638 -61453883 - AluSq SINE Alu -1 312 1 2386 125 45 38 chr15 39926638 39926680 -61453841 + MSTA LTR MaLR 388 428 0 13961 119 42 18 chr15 39926680 39927537 -61452984 - Tigger1 DNA MER2_type -1582 836 1 1949 228 75 95 chr15 39927837 39928829 -61451692 - L2 LINE L2 0 3313 2349 522 179 51 0 chr15 39928834 39928967 -61451554 + L1MC4 LINE L1 6398 6560 -1265 1759 192 61 29 chr15 39928985 39929428 -61451093 + LTR2B LTR ERV1 34 490 0 1349 215 27 62 chr15 39929428 39929833 -61450688 + L1MC4a LINE L1 6537 6927 -881 867 110 118 0 chr15 39929834 39929961 -61450560 + AluSq/x SINE Alu 3 144 -169 1512 161 43 8 chr15 39929980 39930234 -61450287 + AluJb SINE Alu 42 304 -8 2181 147 12 20 chr15 39930234 39930858 -61449663 + L1M2 LINE L1 4954 5570 -742 1013 163 0 0 chr15 39930860 39931020 -61449501 + AluJb SINE Alu 137 296 -16 1238 102 38 72 chr15 39931020 39931082 -61449439 + L1M2 LINE L1 5557 5620 -692 2258 112 0 0 chr15 39931082 39931378 -61449143 + AluSx SINE Alu 5 300 -12 1238 102 38 72 chr15 39931378 39931550 -61448971 + L1M2 LINE L1 5620 5783 -529 1423 149 23 5 chr15 39931556 39931777 -61448744 + AluJo SINE Alu 6 230 -82 279 0 0 0 chr15 39931899 39931930 -61448591 + (A)n Simple_repeat Simple_repeat 1 31 0 2196 130 0 0 chr15 39932113 39932414 -61448107 + AluSx SINE Alu 1 301 -11 1668 153 30 34 chr15 39932421 39932716 -61447805 + AluJo SINE Alu 12 305 -7 254 357 123 7 chr15 39933003 39933157 -61447364 - L2 LINE L2 -1 3271 3100 214 204 23 0 chr15 39933333 39933377 -61447144 + L2 LINE L2 3268 3312 -1 24 0 0 0 chr15 39933554 39933578 -61446943 + AT_rich Low_complexity Low_complexity 1 24 0 4273 145 57 23 chr15 39934173 39934199 -61446322 + L1MB7 LINE L1 5093 5117 -1067 2117 132 3 0 chr15 39934199 39934488 -61446033 + AluSx SINE Alu 1 290 -22 4273 145 57 23 chr15 39934488 39935518 -61445003 + L1MB7 LINE L1 5117 6184 0 240 111 0 0 chr15 39935722 39935758 -61444763 + (TCCCC)n Simple_repeat Simple_repeat 4 39 0 2105 118 7 7 chr15 39935758 39936046 -61444475 - AluSx SINE Alu -24 288 1 275 288 0 0 chr15 39936927 39936993 -61443528 - L2 LINE L2 0 3272 3207 20102 73 5 0 chr15 39938151 39941643 -61438878 - L1PA7 LINE L1 -1 6153 2636 2566 101 25 2 chr15 39941643 39942050 -61438471 - L1PA7 LINE L1 -3421 2725 2310 252 0 0 0 chr15 39942050 39942078 -61438443 + (T)n Simple_repeat Simple_repeat 1 28 0 2765 143 98 116 chr15 39942303 39942735 -61437786 - L1MC3 LINE L1 -180 7605 7167 359 253 0 0 chr15 39942735 39942818 -61437703 - MLT1F1 LTR MaLR -448 119 37 2765 143 98 116 chr15 39942818 39943250 -61437271 - L1MC3 LINE L1 -618 7167 6676 298 264 35 35 chr15 39943493 39943580 -61436941 - MIR3 SINE MIR -3 205 119 * 546 283 57 60 chr15 39943552 39943835 -61436686 - L2 LINE L2 -1 3312 3031 1006 307 102 54 chr15 39943939 39944646 -61435875 - L2 LINE L2 -440 2874 2134 197 304 137 0 chr15 39944654 39944756 -61435765 + MIR SINE MIR 129 244 -18 2437 90 0 0 chr15 39945520 39945820 -61434701 + AluSg SINE Alu 1 300 -10 355 225 68 136 chr15 39945841 39946032 -61434489 + MER91A DNA MER1_type 19 196 0 629 255 39 16 chr15 39946439 39946618 -61433903 + MIR3 SINE MIR 24 205 -3 1974 71 104 0 chr15 39947868 39948136 -61432385 - AluSx SINE Alu -16 296 1 284 272 110 136 chr15 39948414 39948605 -61431916 + MIR3 SINE MIR 16 201 -7 1582 136 17 33 chr15 39948952 39949253 -61431268 + L1MB8 LINE L1 5874 6169 -9 2275 66 0 0 chr15 39949271 39949544 -61430977 + AluY SINE Alu 37 309 -2 2188 112 0 13 chr15 39950242 39950545 -61429976 - AluY SINE Alu -12 299 1 193 370 34 76 chr15 39951597 39951716 -61428805 + L2 LINE L2 3126 3239 -33 2299 110 3 0 chr15 39953139 39953438 -61427083 + AluSx SINE Alu 1 300 -12 629 139 148 0 chr15 39953438 39953553 -61426968 - MER2 DNA MER2_type -213 132 1 881 202 70 12 chr15 39953614 39953857 -61426664 - L1M4 LINE L1 -1267 4879 4623 437 284 44 16 chr15 39953909 39954092 -61426429 - L1M4 LINE L1 -2606 3540 3353 1932 112 11 0 chr15 39955054 39955343 -61425178 + AluSp SINE Alu 16 307 0 931 244 138 0 chr15 39955746 39955971 -61424550 + MIR SINE MIR 6 261 -1 253 296 93 37 chr15 39956953 39957061 -61423460 - L2 LINE L2 -8 3264 3151 235 321 82 57 chr15 39957565 39957967 -61422554 - L2 LINE L2 -1546 1768 1357 4640 152 21 33 chr15 39958061 39958145 -61422376 + L1MB7 LINE L1 5100 5184 -1000 1698 197 34 8 chr15 39958145 39958501 -61422020 - MLT1A1 LTR MaLR 0 365 1 4640 152 21 33 chr15 39958501 39959489 -61421032 + L1MB7 LINE L1 5184 6154 -30 5259 127 48 10 chr15 39959696 39960625 -61419896 + L1MD1 LINE L1 5278 6242 0 767 211 0 0 chr15 39960923 39961056 -61419465 + FLAM_C SINE Alu 1 133 0 249 283 127 14 chr15 39961232 39961400 -61419121 + MIR SINE MIR 37 262 0 835 304 45 14 chr15 39961429 39961715 -61418806 - L3 LINE CR1 -42 1535 1241 263 281 97 18 chr15 39961738 39961852 -61418669 + MIR3 SINE MIR 56 178 -30 351 354 23 0 chr15 39961890 39962020 -61418501 - L3 LINE CR1 -376 1201 1069 779 141 16 8 chr15 39962028 39962193 -61418328 + AluJb SINE Alu 153 318 0 435 338 74 13 chr15 39962268 39962499 -61418022 - L3 LINE CR1 -609 968 724 21 36 0 0 chr15 39962521 39962549 -61417972 + AT_rich Low_complexity Low_complexity 1 28 0 2221 99 0 0 chr15 39962613 39962896 -61417625 - AluSx SINE Alu -29 283 1 1492 200 20 30 chr15 39963578 39963883 -61416638 + AluJo SINE Alu 1 302 -10 189 253 0 81 chr15 39964822 39964909 -61415612 + MIR3 SINE MIR 84 163 -45 866 78 0 54 chr15 39965228 39965357 -61415164 - AluSg/x SINE Alu -6 306 185 1751 11 0 0 chr15 39966575 39966837 -61413684 - L1PA3 LINE L1 -681 5474 5213 5922 23 0 0 chr15 39966837 39967517 -61413004 + L1PA3 LINE L1 5472 6155 0 4151 148 60 78 chr15 39969162 39970144 -61410377 + L1MB3 LINE L1 4642 5585 -598 492 214 46 30 chr15 39970144 39970275 -61410246 + FLAM_A SINE Alu 1 133 0 4151 148 60 78 chr15 39970275 39970864 -61409657 + L1MB3 LINE L1 5585 6183 0 223 364 20 0 chr15 39971240 39971339 -61409182 - L2 LINE L2 -1005 2309 2209 25 51 0 0 chr15 39972354 39972393 -61408128 + AT_rich Low_complexity Low_complexity 1 39 0 30 45 0 0 chr15 39972785 39972829 -61407692 + AT_rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr15 39974745 39974782 -61405739 + AT_rich Low_complexity Low_complexity 1 37 0 380 242 30 10 chr15 39974806 39974905 -61405616 + MIR SINE MIR 51 151 -57 928 268 48 78 chr15 39975042 39975415 -61405106 - L3 LINE CR1 -15 1562 1201 233 48 65 145 chr15 39975428 39975490 -61405031 + L1MB8 LINE L1 6106 6162 -16 535 273 14 14 chr15 39976051 39976267 -61404254 + L1MEd LINE L1 3 218 -5901 210 404 20 0 chr15 39976412 39976511 -61404010 - L2 LINE L2 -604 2710 2610 * 446 256 123 8 chr15 39976504 39976677 -61403844 - MIR SINE MIR 0 262 74 186 215 108 32 chr15 39976737 39976830 -61403691 - L2 LINE L2 -764 2550 2451 3061 157 36 19 chr15 39976881 39977466 -61403055 + L1MB5 LINE L1 5580 6174 0 1788 154 35 7 chr15 39977766 39978051 -61402470 - AluSx SINE Alu -19 293 1 706 249 95 83 chr15 39978212 39978465 -61402056 + MIR SINE MIR 1 256 -6 459 0 0 0 chr15 39978468 39978519 -61402002 + (CAT)n Simple_repeat Simple_repeat 2 52 0 312 281 109 16 chr15 39978730 39978858 -61401663 - L2 LINE L2 0 3313 3174 1408 133 40 36 chr15 39978866 39979144 -61401377 - L1MB8 LINE L1 -1 6177 5899 875 281 16 16 chr15 39979394 39979643 -61400878 - MIR SINE MIR -8 254 6 1739 186 3 0 chr15 39980152 39980442 -61400079 + AluJb SINE Alu 1 291 -21 233 369 28 13 chr15 39980892 39981022 -61399499 + MIR SINE MIR 38 168 -40 2006 133 17 10 chr15 39981174 39981468 -61399053 - AluSq SINE Alu -15 298 3 225 94 0 0 chr15 39982081 39982113 -61398408 + (CA)n Simple_repeat Simple_repeat 1 32 0 367 235 25 84 chr15 39983143 39983262 -61397259 - L2 LINE L2 -13 3300 3189 2489 86 0 0 chr15 39983658 39983960 -61396561 - AluSc SINE Alu -7 302 1 2484 61 0 0 chr15 39984305 39984602 -61395919 - AluY SINE Alu -14 297 1 284 260 130 41 chr15 39985779 39985925 -61394596 + MER5A DNA MER1_type 2 160 -29 1903 170 0 7 chr15 39985929 39986235 -61394286 - AluJo SINE Alu -8 304 1 2261 110 3 0 chr15 39986655 39986955 -61393566 + AluSp SINE Alu 1 301 -12 1917 143 0 11 chr15 39987393 39987679 -61392842 - AluSx SINE Alu -29 283 1 464 280 44 93 chr15 39988821 39989037 -61391484 - MLT1I LTR MaLR -26 383 189 2179 112 20 0 chr15 39989037 39989341 -61391180 - AluY SINE Alu -1 310 1 464 280 44 93 chr15 39989341 39989467 -61391054 - MLT1I LTR MaLR -220 189 58 364 247 47 0 chr15 39990392 39990477 -61390044 + L2 LINE L2 3225 3313 0 448 194 111 56 chr15 39991099 39991243 -61389278 - MER5A DNA MER1_type -3 186 35 21 36 0 0 chr15 39991590 39991618 -61388903 + AT_rich Low_complexity Low_complexity 1 28 0 2135 137 25 25 chr15 39992730 39993095 -61387426 - MLT1A1 LTR MaLR 0 365 1 6266 68 13 43 chr15 39993351 39994801 -61385720 + L1PA14 LINE L1 4743 6161 0 635 343 45 0 chr15 39995088 39995333 -61385188 + MIR SINE MIR 2 257 -5 663 274 73 5 chr15 39997834 39998038 -61382483 + MIR SINE MIR 1 218 -44 315 233 176 19 chr15 39998078 39998237 -61382284 - L1M4 LINE L1 -1891 4255 4072 361 341 15 7 chr15 39998242 39998377 -61382144 + L2 LINE L2 1839 1974 -1340 6656 56 24 0 chr15 39998389 39998860 -61381661 - L1PA7 LINE L1 0 6154 5696 2166 113 0 26 chr15 39998860 39999170 -61381351 - AluSc SINE Alu -6 303 2 6656 56 24 0 chr15 39999170 39999915 -61380606 - L1PA7 LINE L1 -458 5696 4926 180 0 0 0 chr15 39999918 39999938 -61380583 + (T)n Simple_repeat Simple_repeat 1 20 0 11517 168 15 95 chr15 39999957 40003082 -61377439 + L1P LINE L1 10 2882 -3264 184 118 20 20 chr15 40004342 40004393 -61376128 + A-rich Low_complexity Low_complexity 5 55 0 2446 85 0 0 chr15 40004478 40004773 -61375748 + AluSc SINE Alu 1 295 -14 717 193 143 37 chr15 40005463 40005624 -61374897 - MER5A DNA MER1_type 0 189 12 2155 119 0 16 chr15 40006273 40006591 -61373930 - AluSq SINE Alu 0 313 1 2377 87 0 3 chr15 40007103 40007412 -61373109 + AluSc SINE Alu 1 308 -1 384 265 63 29 chr15 40008024 40008169 -61372352 + MER5A DNA MER1_type 7 144 -34 1204 157 0 60 chr15 40009748 40009997 -61370524 - L1MB8 LINE L1 -6 6172 5939 1591 143 59 0 chr15 40009998 40010284 -61370237 + Tigger3(Golem) DNA MER2_type 1 303 -2726 4082 116 81 26 chr15 40010285 40011054 -61369467 + Tigger3(Golem) DNA MER2_type 2218 3028 -1 997 175 74 0 chr15 40011054 40011271 -61369250 - L1MB8 LINE L1 -255 5923 5691 2026 148 27 0 chr15 40011313 40011611 -61368910 - AluJb SINE Alu -6 306 1 243 106 170 0 chr15 40011709 40011756 -61368765 + MLT1A1 LTR MaLR 259 313 -52 968 144 31 2 chr15 40012103 40012350 -61368171 + MER2 DNA MER2_type 23 316 -29 23 0 0 0 chr15 40012437 40012460 -61368061 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr15 40012511 40012531 -61367990 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 297 331 97 23 chr15 40012535 40012817 -61367704 + L2 LINE L2 2749 3047 -225 213 291 148 82 chr15 40012874 40013056 -61367465 + L2 LINE L2 3064 3257 -15 723 163 7 7 chr15 40013079 40013232 -61367289 - Charlie1 DNA MER1_type -1 2760 2608 313 186 70 12 chr15 40013249 40013335 -61367186 - Charlie1 DNA MER1_type -2655 106 16 469 303 27 5 chr15 40014254 40014442 -61366079 + MER58C DNA MER1_type 1 192 -23 469 200 85 62 chr15 40014460 40014590 -61365931 + FLAM_A SINE Alu 1 133 0 2346 89 3 16 chr15 40014598 40014914 -61365607 + AluSp SINE Alu 1 312 -1 1570 170 15 11 chr15 40014917 40015188 -61365333 + AluJo SINE Alu 3 274 -38 495 0 0 0 chr15 40015201 40015256 -61365265 + (TAAAA)n Simple_repeat Simple_repeat 2 56 0 257 231 0 31 chr15 40015277 40015342 -61365179 + MIR SINE MIR 200 262 0 279 70 0 0 chr15 40015509 40015552 -61364969 - L1MB4 LINE L1 -2 6178 6136 * 394 218 73 0 chr15 40015550 40015660 -61364861 - L1MCa LINE L1 -4760 1666 1549 204 150 0 25 chr15 40015660 40015700 -61364821 + (TTTC)n Simple_repeat Simple_repeat 1 39 0 2893 132 58 37 chr15 40015700 40016268 -61364253 - L1MC1 LINE L1 0 6333 5754 1040 129 0 54 chr15 40016349 40016423 -61364098 - L1MC1 LINE L1 -575 5758 5682 977 191 18 0 chr15 40016423 40016591 -61363930 - FAM SINE Alu -4 171 1 1040 129 0 54 chr15 40016591 40016702 -61363819 - L1MC1 LINE L1 -651 5682 5583 355 262 213 7 chr15 40016974 40017115 -61363406 + MIR SINE MIR 56 225 -37 214 235 20 0 chr15 40017368 40017419 -61363102 + (TA)n Simple_repeat Simple_repeat 2 53 0 2296 80 23 0 chr15 40018075 40018377 -61362144 - AluY SINE Alu -2 309 1 2353 64 3 10 chr15 40018704 40019002 -61361519 - AluY SINE Alu -15 296 1 1067 79 0 0 chr15 40019002 40019129 -61361392 - AluSg SINE Alu -183 127 1 380 278 19 127 chr15 40019550 40019627 -61360894 + MIR SINE MIR 18 102 -160 1903 110 11 73 chr15 40019627 40019982 -61360539 - L1MA2 LINE L1 0 6304 5972 380 278 19 127 chr15 40019982 40020116 -61360405 + MIR SINE MIR 102 206 -56 733 289 11 66 chr15 40021015 40021365 -61359156 - MER102b DNA MER1_type -1 340 10 265 123 31 0 chr15 40022399 40022464 -61358057 + (TA)n Simple_repeat Simple_repeat 1 67 0 180 0 0 0 chr15 40022484 40022504 -61358017 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 741 167 27 47 chr15 40022507 40022657 -61357864 - FRAM SINE Alu -30 146 1 2211 88 0 72 chr15 40023036 40023356 -61357165 + AluSx SINE Alu 1 297 -15 288 111 0 0 chr15 40024212 40024257 -61356264 + (T)n Simple_repeat Simple_repeat 1 45 0 1236 113 0 21 chr15 40024386 40024572 -61355949 + AluY SINE Alu 124 305 -6 21 0 0 0 chr15 40024885 40024906 -61355615 + AT_rich Low_complexity Low_complexity 1 21 0 974 137 72 13 chr15 40025089 40025242 -61355279 - FRAM SINE Alu -15 161 1 623 295 112 8 chr15 40025381 40025416 -61355105 - L2 LINE L2 -192 3121 3091 2272 103 0 3 chr15 40025416 40025717 -61354804 - AluSx SINE Alu -12 300 1 623 295 112 8 chr15 40025717 40025949 -61354572 - L2 LINE L2 -222 3091 2826 398 293 57 0 chr15 40025939 40026062 -61354459 - L2 LINE L2 -589 2725 2596 * 1694 114 8 4 chr15 40026515 40026751 -61353770 + AluSg SINE Alu 1 237 -73 353 151 0 0 chr15 40026854 40026907 -61353614 - Alu SINE Alu -246 54 2 483 278 94 48 chr15 40026985 40027165 -61353356 + Tigger8 DNA MER2_type 271 441 -225 2233 110 0 0 chr15 40027165 40027457 -61353064 - AluSx SINE Alu -20 292 1 483 278 94 48 chr15 40027457 40027650 -61352871 + Tigger8 DNA MER2_type 441 661 -5 512 235 0 0 chr15 40027820 40027918 -61352603 + FLAM_A SINE Alu 22 119 -23 467 315 13 88 chr15 40029821 40030129 -61350392 - L2 LINE L2 -43 3229 2945 574 148 117 16 chr15 40030138 40030266 -61350255 + L1MB4 LINE L1 6032 6172 -8 226 272 37 25 chr15 40030307 40030388 -61350133 - L2 LINE L2 -450 2864 2783 279 372 88 14 chr15 40030395 40030758 -61349763 - L2 LINE L2 -639 2675 2286 2254 97 3 7 chr15 40031086 40031386 -61349135 + AluSx SINE Alu 2 300 -12 364 234 103 7 chr15 40031562 40031707 -61348814 - L1ME4a LINE L1 -225 5896 5738 252 289 133 61 chr15 40032170 40032350 -61348171 + L2 LINE L2 2924 3116 -156 279 114 0 0 chr15 40033660 40033704 -61346817 + (T)n Simple_repeat Simple_repeat 1 44 0 1006 174 0 0 chr15 40034463 40034624 -61345897 - AluJb SINE Alu -10 302 142 28 29 0 0 chr15 40034624 40034659 -61345862 + AT_rich Low_complexity Low_complexity 1 35 0 1944 135 24 14 chr15 40034660 40034949 -61345572 - AluJb SINE Alu -20 292 1 585 258 16 8 chr15 40035486 40035610 -61344911 + L2 LINE L2 3187 3311 -2 990 351 107 33 chr15 40035660 40036223 -61344298 - L2 LINE L2 -359 2955 2435 2265 61 37 20 chr15 40036223 40036517 -61344004 - AluY SINE Alu -12 299 1 990 351 107 33 chr15 40036517 40037079 -61343442 - L2 LINE L2 -879 2435 1747 221 0 35 0 chr15 40037340 40037369 -61343152 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 2101 132 23 0 chr15 40037403 40037707 -61342814 + AluSx SINE Alu 1 311 -1 318 307 80 22 chr15 40037796 40037971 -61342550 + L1MC/D LINE L1 4369 4532 -1614 1549 143 38 56 chr15 40037971 40038287 -61342234 + AluJb SINE Alu 1 311 0 2027 73 45 73 chr15 40038293 40038607 -61341914 + AluY SINE Alu 1 305 -6 318 307 80 22 chr15 40038607 40038648 -61341873 + L1MC/D LINE L1 4536 4606 -1540 2248 109 3 0 chr15 40038752 40039045 -61341476 + AluSq SINE Alu 1 294 -19 25 0 0 0 chr15 40039259 40039284 -61341237 + AT_rich Low_complexity Low_complexity 1 25 0 303 313 87 7 chr15 40039414 40039564 -61340957 + L1MC/D LINE L1 5320 5481 -761 737 128 0 8 chr15 40039679 40039796 -61340725 - AluSp/q SINE Alu -11 302 187 843 207 0 0 chr15 40039959 40040104 -61340417 + FRAM SINE Alu 1 140 -36 198 0 0 0 chr15 40040112 40040134 -61340387 + (TAA)n Simple_repeat Simple_repeat 1 22 0 298 370 46 17 chr15 40040146 40040319 -61340202 - L3 LINE CR1 -1169 408 231 1886 141 3 34 chr15 40041902 40042200 -61338321 - AluSx SINE Alu -23 289 1 24 0 0 0 chr15 40042372 40042396 -61338125 + AT_rich Low_complexity Low_complexity 1 24 0 1837 164 10 7 chr15 40042399 40042697 -61337824 + AluJb SINE Alu 1 299 -13 2166 119 10 0 chr15 40043008 40043311 -61337210 + AluSq SINE Alu 3 308 -5 22 0 0 0 chr15 40044329 40044351 -61336170 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr15 40045717 40045745 -61334776 + AT_rich Low_complexity Low_complexity 1 28 0 3843 149 17 59 chr15 40045955 40046627 -61333894 + L1MB3 LINE L1 5340 6039 -144 3680 114 8 4 chr15 40046627 40047152 -61333369 - MER1A DNA MER1_type 0 527 1 3843 149 17 59 chr15 40047152 40047248 -61333273 + L1MB3 LINE L1 6039 6137 -46 1791 188 0 0 chr15 40047248 40047536 -61332985 - AluJo SINE Alu -22 290 3 276 53 0 0 chr15 40047541 40047579 -61332942 + (TATG)n Simple_repeat Simple_repeat 2 39 0 2151 113 0 17 chr15 40047579 40047870 -61332651 - AluSg SINE Alu -24 286 1 3843 149 17 59 chr15 40047870 40047925 -61332596 + L1MB3 LINE L1 6080 6136 -47 720 73 0 0 chr15 40047925 40048053 -61332468 + AluSc SINE Alu 183 310 0 643 62 0 0 chr15 40048105 40048186 -61332335 + AluY SINE Alu 1 81 -230 247 188 0 0 chr15 40048286 40048334 -61332187 - Alu SINE Alu -124 178 131 2432 79 3 0 chr15 40048513 40048817 -61331704 + AluSp SINE Alu 1 305 -8 2156 48 3 35 chr15 40048820 40049131 -61331390 + AluY SINE Alu 1 301 -10 394 275 36 43 chr15 40049247 40049385 -61331136 + L2 LINE L2 3136 3272 0 710 232 23 161 chr15 40050606 40051077 -61329444 + LTR67 LTR ERVL 102 636 79 2107 99 0 11 chr15 40051077 40051360 -61329161 + AluSx SINE Alu 1 280 -32 225 0 0 0 chr15 40051360 40051385 -61329136 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 710 232 23 161 chr15 40051385 40051433 -61329088 + LTR67 LTR ERVL 497 550 -7 1957 151 17 0 chr15 40051494 40051793 -61328728 + AluJb SINE Alu 1 304 -8 321 248 9 19 chr15 40051877 40051982 -61328539 - L1ME LINE L1 -392 5729 5626 2190 133 3 0 chr15 40052444 40052752 -61327769 + AluSx SINE Alu 2 310 -2 1214 174 0 24 chr15 40053112 40053324 -61327197 + AluJb SINE Alu 87 293 -19 2206 107 0 7 chr15 40053535 40053833 -61326688 - AluSx SINE Alu -16 296 1 25 0 0 0 chr15 40055956 40055981 -61324540 + AT_rich Low_complexity Low_complexity 1 25 0 713 186 32 0 chr15 40056033 40056157 -61324364 - FLAM_A SINE Alu -5 128 1 2052 139 7 0 chr15 40056185 40056480 -61324041 + AluSx SINE Alu 1 297 -15 2049 129 3 3 chr15 40057720 40058006 -61322515 - AluSx SINE Alu -26 286 1 1673 149 0 84 chr15 40058037 40058360 -61322161 - AluJo SINE Alu -16 296 1 31 44 0 0 chr15 40058669 40058714 -61321807 + AT_rich Low_complexity Low_complexity 1 45 0 1911 139 24 10 chr15 40059468 40059756 -61320765 - AluSx SINE Alu -20 292 1 363 358 9 0 chr15 40059916 40060025 -61320496 - MIR SINE MIR -147 115 6 283 226 0 0 chr15 40060732 40060785 -61319736 + MIR SINE MIR 89 141 -67 1766 49 5 0 chr15 40060795 40061018 -61319503 + L1PA8 LINE L1 5940 6163 -9 210 226 0 38 chr15 40061249 40061302 -61319219 + MIR3 SINE MIR 157 207 -1 536 241 0 0 chr15 40061304 40061437 -61319084 + L1MB8 LINE L1 5391 5523 -719 392 264 149 17 chr15 40062413 40062717 -61317804 + L1MDa LINE L1 1607 1990 -4602 1608 134 17 81 chr15 40062911 40063269 -61317252 + L1MB8 LINE L1 5843 6177 -1 22 56 0 0 chr15 40063314 40063350 -61317171 + AT_rich Low_complexity Low_complexity 1 36 0 288 0 0 0 chr15 40063417 40063449 -61317072 + (CA)n Simple_repeat Simple_repeat 2 33 0 291 281 51 63 chr15 40063554 40063728 -61316793 + L1MDa LINE L1 2607 2782 -3758 849 136 8 0 chr15 40063728 40063860 -61316661 + FLAM_C SINE Alu 1 133 0 291 281 51 63 chr15 40063860 40064095 -61316426 + L1MDa LINE L1 2782 3011 -3529 306 296 11 0 chr15 40064124 40064212 -61316309 - L1MC4 LINE L1 -1339 6703 6615 480 288 133 23 chr15 40064223 40064525 -61315996 + L1MDa LINE L1 3045 3379 -3161 575 287 90 29 chr15 40064542 40064715 -61315806 + L1MDa LINE L1 4466 4627 -1913 2058 143 7 13 chr15 40064715 40065023 -61315498 + AluJb SINE Alu 1 306 -6 575 287 90 29 chr15 40065023 40065705 -61314816 + L1MDa LINE L1 4627 5422 -1118 869 333 152 40 chr15 40065738 40066563 -61313958 - L3 LINE CR1 -381 1196 280 2245 102 0 13 chr15 40066926 40067240 -61313281 + AluSg SINE Alu 1 310 0 2219 103 3 0 chr15 40067762 40068072 -61312449 + AluY SINE Alu 1 311 0 23 0 0 0 chr15 40069159 40069182 -61311339 + AT_rich Low_complexity Low_complexity 1 23 0 6637 71 32 5 chr15 40070127 40071695 -61308826 - L1PA10 LINE L1 -16 6152 4551 2588 156 32 55 chr15 40071752 40072311 -61308210 + L1MDa LINE L1 174 719 -5823 791 131 31 56 chr15 40072343 40072395 -61308126 + Tigger1 DNA MER2_type 2 54 -2364 2508 44 0 0 chr15 40072395 40072689 -61307832 - AluY SINE Alu -17 294 1 791 131 31 56 chr15 40072689 40072796 -61307725 + Tigger1 DNA MER2_type 54 157 -2261 * 1013 159 43 0 chr15 40072785 40072993 -61307528 + Tigger1 DNA MER2_type 2202 2418 0 3748 144 38 8 chr15 40072993 40073904 -61306617 + L1MDa LINE L1 1969 2915 -3625 2364 200 32 63 chr15 40073913 40074616 -61305905 + L1MDa LINE L1 4024 4748 -1792 1533 181 23 55 chr15 40074616 40074926 -61305595 + AluJo SINE Alu 1 300 -12 2137 144 0 0 chr15 40074928 40075233 -61305288 + AluSx SINE Alu 1 305 -7 2487 93 0 0 chr15 40075234 40075545 -61304976 + AluY SINE Alu 1 311 0 2364 200 32 63 chr15 40075545 40075729 -61304792 + L1MDa LINE L1 4748 4884 -1656 1138 205 92 7 chr15 40075740 40076043 -61304478 + L1MDa LINE L1 5398 5726 -814 2073 122 10 0 chr15 40076046 40076341 -61304180 + AluSx SINE Alu 1 298 -14 792 267 118 41 chr15 40076341 40076998 -61303523 - L1ME1 LINE L1 -216 5950 5219 4817 149 35 17 chr15 40077010 40077805 -61302716 + L1MB3 LINE L1 5320 6132 -51 1990 125 17 0 chr15 40077805 40078093 -61302428 + AluSq SINE Alu 1 293 -20 4817 149 35 17 chr15 40078093 40078131 -61302390 + L1MB3 LINE L1 6132 6168 -15 374 299 19 0 chr15 40128169 40128276 -61252245 - MIR3 SINE MIR -2 206 98 2420 76 0 0 chr15 40128291 40128581 -61251940 + AluSc SINE Alu 1 290 -19 2111 118 7 3 chr15 40129251 40129547 -61250974 - AluSx SINE Alu -15 297 1 286 103 0 0 chr15 40129604 40129643 -61250878 - U6 snRNA snRNA -66 41 3 433 257 64 0 chr15 40129646 40129755 -61250766 - L2 LINE L2 -8 3305 3190 1714 106 17 0 chr15 40130244 40130480 -61250041 - AluSg/x SINE Alu -2 308 69 1771 143 0 7 chr15 40130580 40130853 -61249668 + AluJo SINE Alu 21 291 -21 2238 102 0 7 chr15 40130991 40131284 -61249237 + AluSc SINE Alu 1 291 -18 260 207 107 107 chr15 40131479 40131600 -61248921 + L2 LINE L2 3193 3313 0 1477 140 133 33 chr15 40131711 40131982 -61248539 + AluJo SINE Alu 1 298 -14 188 135 27 0 chr15 40132253 40132290 -61248231 + CT-rich Low_complexity Low_complexity 1 38 0 329 206 16 0 chr15 40132383 40132446 -61248075 - HAL1 LINE L1 -1 2506 2443 911 204 0 12 chr15 40132446 40132651 -61247870 + AluJb SINE Alu 117 319 0 1643 211 114 69 chr15 40132659 40132775 -61247746 - HAL1 LINE L1 -76 2431 2322 1954 161 0 19 chr15 40132775 40133092 -61247429 - AluJo SINE Alu 0 312 2 1643 211 114 69 chr15 40133092 40133630 -61246891 - HAL1 LINE L1 -185 2322 1747 487 305 61 6 chr15 40133665 40133829 -61246692 - MLT1I LTR MaLR -39 370 198 1761 164 0 7 chr15 40133951 40134238 -61246283 - AluJb SINE Alu -8 304 20 2553 44 7 0 chr15 40134273 40134569 -61245952 - AluY SINE Alu -13 298 1 866 219 87 35 chr15 40134574 40134861 -61245660 - HAL1 LINE L1 -762 1745 1444 2399 86 3 0 chr15 40135805 40136106 -61244415 + AluSg SINE Alu 1 302 -8 2251 128 0 0 chr15 40136182 40136494 -61244027 + AluSx SINE Alu 1 312 0 264 75 50 0 chr15 40136822 40136862 -61243659 + L2 LINE L2 3271 3312 -1 2640 7 0 0 chr15 40136892 40137174 -61243347 + AluYb8 SINE Alu 35 316 -2 405 320 156 17 chr15 40138290 40138521 -61242000 + L2 LINE L2 2599 2861 -453 267 214 18 0 chr15 40138542 40138598 -61241923 + Charlie7 DNA MER1_type 35 91 -2521 2142 119 0 0 chr15 40138764 40139058 -61241463 + AluSx SINE Alu 1 294 -18 2044 135 30 0 chr15 40139212 40139515 -61241006 + AluSx SINE Alu 1 312 0 443 239 134 67 chr15 40139552 40139761 -61240760 + L1ME4a LINE L1 5731 5925 -196 1812 162 37 3 chr15 40139761 40140057 -61240464 + AluJo SINE Alu 3 308 -4 443 239 134 67 chr15 40140057 40140215 -61240306 + L1ME4a LINE L1 5925 6120 -1 209 326 174 57 chr15 40140378 40140694 -61239827 - L2 LINE L2 -20 3252 2900 1769 132 10 84 chr15 40140792 40140962 -61239559 - AluJb SINE Alu -23 289 108 1745 117 23 23 chr15 40140962 40141226 -61239295 - AluSx SINE Alu -13 299 36 2074 129 3 3 chr15 40141228 40141531 -61238990 - AluSc SINE Alu -6 303 1 1769 132 10 84 chr15 40141531 40141667 -61238854 - AluJb SINE Alu -205 107 3 1366 181 36 4 chr15 40141681 40141930 -61238591 - AluJb SINE Alu -9 303 47 2077 150 0 0 chr15 40142786 40143092 -61237429 + AluSx SINE Alu 1 306 -6 385 272 29 15 chr15 40143092 40143228 -61237293 - HAL1b LINE L1 -450 898 761 8521 97 26 25 chr15 40143236 40144497 -61236024 - HSMAR2 DNA Mariner 0 1302 41 1431 168 7 42 chr15 40144525 40144810 -61235711 - AluJo SINE Alu -17 295 21 1894 151 7 0 chr15 40144888 40145167 -61235354 - AluSx SINE Alu -21 291 11 189 0 0 0 chr15 40145172 40145193 -61235328 + (T)n Simple_repeat Simple_repeat 1 21 0 818 314 8 8 chr15 40145575 40145814 -61234707 - MIR SINE MIR -20 242 4 425 247 143 7 chr15 40145834 40145988 -61234533 + MIR SINE MIR 12 186 -76 372 257 59 10 chr15 40145991 40146092 -61234429 + HAL1 LINE L1 1 106 -2401 1633 183 21 0 chr15 40146093 40146378 -61234143 + AluJb SINE Alu 1 291 -21 717 63 31 50 chr15 40146378 40146537 -61233984 + (GGAA)n Simple_repeat Simple_repeat 1 156 0 2529 74 0 0 chr15 40146540 40146851 -61233670 + AluY SINE Alu 1 311 0 1423 233 78 13 chr15 40146857 40147239 -61233282 + HAL1 LINE L1 94 500 -2007 537 220 25 92 chr15 40147229 40147511 -61233010 + HAL1 LINE L1 846 1108 -1399 * 2376 70 0 23 chr15 40147757 40148056 -61232465 + AluY SINE Alu 1 292 -19 777 212 190 0 chr15 40148074 40148258 -61232263 + MIR SINE MIR 18 236 -26 360 340 191 10 chr15 40148398 40148607 -61231914 + MIR SINE MIR 13 259 -3 275 196 0 0 chr15 40149082 40149128 -61231393 + L2 LINE L2 3211 3256 -16 2284 113 60 28 chr15 40149360 40149713 -61230808 + THE1B LTR MaLR 1 364 0 2506 81 0 0 chr15 40150290 40150598 -61229923 + AluSx SINE Alu 1 308 -4 1908 133 0 18 chr15 40150921 40151199 -61229322 + AluSx SINE Alu 13 285 -27 1485 238 57 7 chr15 40151692 40152112 -61228409 + MER113 DNA MER1_type? 78 518 -3 2038 121 3 3 chr15 40152288 40152593 -61227928 + AluSx SINE Alu 1 305 0 559 225 45 18 chr15 40152926 40153037 -61227484 + MER81 DNA DNA 1 114 0 2391 108 0 0 chr15 40153055 40153361 -61227160 + AluSx SINE Alu 1 306 -6 2486 73 0 0 chr15 40153761 40154063 -61226458 + AluY SINE Alu 1 302 -9 2045 125 4 0 chr15 40154074 40154380 -61226141 + AluSg SINE Alu 1 307 0 2128 110 0 27 chr15 40154544 40154845 -61225676 - AluSg SINE Alu -17 293 1 725 161 51 22 chr15 40154878 40155015 -61225506 - L1M4 LINE L1 -354 5824 5684 1583 157 64 4 chr15 40155350 40155631 -61224890 - AluSx SINE Alu -14 298 1 213 193 35 18 chr15 40156380 40156437 -61224084 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 1411 132 29 0 chr15 40156443 40156647 -61223874 - AluJo SINE Alu -102 210 1 796 153 186 77 chr15 40157229 40157412 -61223109 - MER20 DNA MER1_type -16 203 1 735 197 8 8 chr15 40157414 40157546 -61222975 + FLAM_A SINE Alu 1 132 -1 2593 62 0 0 chr15 40157593 40157900 -61222621 - AluY SINE Alu 0 311 5 728 142 0 0 chr15 40158011 40158124 -61222397 + L1MB4 LINE L1 6063 6175 -5 2281 103 0 0 chr15 40158124 40158415 -61222106 - AluSg SINE Alu -19 291 1 1739 175 10 29 chr15 40158444 40158753 -61221768 + AluJo SINE Alu 1 303 -9 270 268 149 13 chr15 40159023 40159110 -61221411 - MIR3 SINE MIR -30 178 79 28508 25 0 1 chr15 40160055 40163993 -61216528 + L1PA2 LINE L1 2217 6153 -2 180 77 0 0 chr15 40164109 40164135 -61216386 + (CATGT)n Simple_repeat Simple_repeat 1 26 0 244 278 56 0 chr15 40164655 40164727 -61215794 - MIR SINE MIR -91 171 96 1869 231 82 24 chr15 40165068 40165823 -61214698 + L1ME3A LINE L1 4628 5438 -726 841 152 0 36 chr15 40165826 40166006 -61214515 + AluJo/FLAM SINE Alu 1 133 -169 1311 185 0 4 chr15 40166006 40166238 -61214283 + AluJo SINE Alu 82 312 0 1262 255 56 61 chr15 40166238 40166572 -61213949 + L1ME3A LINE L1 5429 5762 -408 2424 83 0 3 chr15 40166572 40166884 -61213637 + AluY SINE Alu 1 311 0 1262 255 56 61 chr15 40166884 40166977 -61213544 + L1ME3A LINE L1 5762 5854 -316 486 223 87 98 chr15 40167348 40167613 -61212908 + L1ME3A LINE L1 5909 6170 0 2299 97 0 7 chr15 40167865 40168165 -61212356 + AluSg SINE Alu 1 298 -12 274 257 122 14 chr15 40168293 40168441 -61212080 - L2 LINE L2 -1414 1900 1737 1407 174 7 56 chr15 40168590 40168860 -61211661 - AluJo SINE Alu -55 257 1 2324 82 23 7 chr15 40168864 40169169 -61211352 - AluSg SINE Alu 0 310 1 487 313 69 69 chr15 40169255 40169543 -61210978 + L2 LINE L2 2980 3267 -5 2102 118 10 0 chr15 40169864 40170160 -61210361 - AluSx SINE Alu -13 299 1 2374 82 0 19 chr15 40170174 40170491 -61210030 - AluY SINE Alu 0 311 1 2391 76 3 3 chr15 40170641 40170943 -61209578 + AluSg1 SINE Alu 1 302 -7 499 254 58 58 chr15 40170943 40171081 -61209440 - L1PB4 LINE L1 -4 6152 6011 1972 158 3 0 chr15 40171438 40171736 -61208785 + AluJb SINE Alu 1 299 -13 1744 163 67 0 chr15 40172095 40172365 -61208156 - AluJo SINE Alu -24 288 1 2194 105 0 7 chr15 40173074 40173368 -61207153 - AluSg1 SINE Alu -17 292 1 2085 69 0 0 chr15 40173379 40173655 -61206866 - AluY SINE Alu 0 313 38 2019 92 44 20 chr15 40173705 40173999 -61206522 - AluSg SINE Alu -9 301 1 1890 163 3 3 chr15 40174009 40174304 -61206217 - AluJb SINE Alu -17 295 1 398 215 37 47 chr15 40174954 40175061 -61205460 - MIR SINE MIR -66 196 91 45 19 0 0 chr15 40175220 40175272 -61205249 + AT_rich Low_complexity Low_complexity 1 52 0 3140 183 20 161 chr15 40175309 40175426 -61205095 + L1MC4a LINE L1 6871 7003 -805 1974 125 3 34 chr15 40175426 40175721 -61204800 + AluSx SINE Alu 1 286 -26 695 12 12 0 chr15 40175722 40175806 -61204715 + (TAGA)n Simple_repeat Simple_repeat 3 87 0 3140 183 20 161 chr15 40175806 40175977 -61204544 + L1MC4a LINE L1 7003 7196 -612 2314 104 3 0 chr15 40175977 40176284 -61204237 + AluSq SINE Alu 1 308 -5 3140 183 20 161 chr15 40176284 40176574 -61203947 + L1MC4a LINE L1 7196 7525 -283 887 173 0 0 chr15 40176574 40176707 -61203814 + FLAM_C SINE Alu 1 133 0 3140 183 20 161 chr15 40176707 40176742 -61203779 + L1MC4a LINE L1 7525 7563 -245 2462 85 0 3 chr15 40176742 40177048 -61203473 + AluSc SINE Alu 1 305 -4 3140 183 20 161 chr15 40177048 40177719 -61202802 + L1MC4a LINE L1 7563 7808 0 2232 97 10 3 chr15 40177723 40178013 -61202508 + AluSx SINE Alu 1 292 -20 619 233 0 0 chr15 40178222 40178338 -61202183 - FLAM_A SINE Alu -17 116 1 219 229 33 0 chr15 40178418 40178479 -61202042 + (TA)n Simple_repeat Simple_repeat 2 64 0 2288 83 3 3 chr15 40179526 40179815 -61200706 + AluSq SINE Alu 1 289 -24 214 171 0 0 chr15 40179815 40179850 -61200671 + (CATATA)n Simple_repeat Simple_repeat 3 37 0 244 284 0 0 chr15 40179850 40179938 -61200583 - L1MC4 LINE L1 -1339 6703 6616 20816 43 52 3 chr15 40180022 40182611 -61197910 + L1P LINE L1 13 2728 -3418 487 153 0 0 chr15 40182720 40182805 -61197716 - MIR SINE MIR -67 195 111 810 183 0 0 chr15 40182806 40182937 -61197584 + FLAM_C SINE Alu 3 133 0 2085 127 0 0 chr15 40182950 40183233 -61197288 - AluSx SINE Alu -27 285 3 22 35 0 0 chr15 40183236 40183265 -61197256 + AT_rich Low_complexity Low_complexity 1 29 0 355 216 226 0 chr15 40183269 40183371 -61197150 - MIR SINE MIR -136 126 2 2109 122 0 3 chr15 40183544 40183850 -61196671 - AluSq SINE Alu 0 305 1 457 135 144 0 chr15 40185093 40185197 -61195324 + L1MA8 LINE L1 6163 6281 -10 615 154 18 9 chr15 40185230 40185340 -61195181 - FLAM_A SINE Alu -12 130 20 575 115 0 0 chr15 40185916 40185994 -61194527 + AluSp/q SINE Alu 216 293 -20 213 39 0 0 chr15 40185994 40186020 -61194501 + (TA)n Simple_repeat Simple_repeat 2 27 0 458 292 48 12 chr15 40186679 40186741 -61193780 + MER5B DNA MER1_type 1 59 -119 216 0 0 0 chr15 40186741 40186765 -61193756 + (TA)n Simple_repeat Simple_repeat 2 25 0 458 292 48 12 chr15 40186765 40186870 -61193651 + MER5B DNA MER1_type 59 174 -4 513 106 150 9 chr15 40186912 40187025 -61193496 - MER106A DNA MER1_type 0 236 108 543 207 9 26 chr15 40187072 40187188 -61193333 - AluJo SINE Alu -105 207 94 21 36 0 0 chr15 40187216 40187244 -61193277 + AT_rich Low_complexity Low_complexity 1 28 0 2319 82 3 36 chr15 40187244 40187550 -61192971 + AluSq SINE Alu 1 296 -17 1108 260 60 27 chr15 40187607 40187907 -61192614 - MLT1I LTR MaLR -21 388 79 2164 78 3 27 chr15 40188170 40188466 -61192055 + AluY SINE Alu 5 293 -18 2465 65 0 0 chr15 40188962 40189256 -61191265 + AluY SINE Alu 1 294 -17 2452 90 0 0 chr15 40190603 40190914 -61189607 - AluSq SINE Alu -2 311 1 21 0 0 0 chr15 40191010 40191031 -61189490 + AT_rich Low_complexity Low_complexity 1 21 0 835 204 11 17 chr15 40191351 40191527 -61188994 + MER5B DNA MER1_type 4 178 0 2008 150 0 16 chr15 40191760 40192073 -61188448 + AluSq SINE Alu 1 308 -5 286 197 84 0 chr15 40192434 40192505 -61188016 - MIR SINE MIR -67 195 119 315 0 0 0 chr15 40192591 40192626 -61187895 + (TG)n Simple_repeat Simple_repeat 1 35 0 2237 118 0 10 chr15 40192704 40193009 -61187512 - AluSq SINE Alu -11 302 1 1051 85 0 0 chr15 40193524 40193654 -61186867 + AluSg/x SINE Alu 163 292 -18 2275 103 0 13 chr15 40193667 40193803 -61186718 + AluSx SINE Alu 1 137 -175 2075 102 27 7 chr15 40193803 40194098 -61186423 + AluSp SINE Alu 1 301 -12 2275 103 0 13 chr15 40194098 40194263 -61186258 + AluSx SINE Alu 137 298 -14 203 256 0 0 chr15 40194402 40194441 -61186080 + L2 LINE L2 2582 2620 -694 891 105 0 0 chr15 40194527 40194651 -61185870 - AluSg/x SINE Alu -4 308 185 608 89 22 0 chr15 40194655 40194745 -61185776 - AluSc SINE Alu -212 97 6 250 364 43 67 chr15 40194746 40195055 -61185466 + L2 LINE L2 2684 2981 -291 1717 167 0 46 chr15 40195055 40195390 -61185131 - AluJb SINE Alu 0 312 1 250 364 43 67 chr15 40195390 40195578 -61184943 + L2 LINE L2 2981 3172 -100 1036 211 0 0 chr15 40196400 40196575 -61183946 - FAM SINE Alu 0 175 1 7246 52 4 3 chr15 40196672 40198199 -61182322 + L1PA6 LINE L1 4627 6154 0 2132 213 63 27 chr15 40198401 40198916 -61181605 - HsTC2c DNA Tc2 -1259 639 103 1525 76 0 0 chr15 40198916 40199100 -61181421 + AluSq SINE Alu 5 188 -125 286 130 0 0 chr15 40199100 40199146 -61181375 + AluSq SINE Alu 254 299 -1 3541 202 21 70 chr15 40199251 40200270 -61180251 + LTR5 LTR ERVK 1 969 0 967 182 0 17 chr15 40200496 40200672 -61179849 + AluJb SINE Alu 136 308 -4 2138 58 4 0 chr15 40201032 40201289 -61179232 + AluY SINE Alu 1 258 -53 29 0 0 0 chr15 40201820 40201849 -61178672 + GC_rich Low_complexity Low_complexity 1 29 0 1363 114 5 30 chr15 40202135 40202199 -61178322 - AluSp SINE Alu -116 197 133 2430 69 0 16 chr15 40202199 40202504 -61178017 - AluY SINE Alu -11 300 1 1363 114 5 30 chr15 40202504 40202641 -61177880 - AluSp SINE Alu -180 133 1 798 191 7 0 chr15 40202648 40202795 -61177726 - FAM SINE Alu -15 170 23 2302 98 3 0 chr15 40202840 40203135 -61177386 - AluSc SINE Alu -13 296 1 2403 77 3 3 chr15 40203208 40203505 -61177016 - AluSq SINE Alu -16 297 1 1830 171 0 3 chr15 40203573 40203866 -61176655 - AluJo SINE Alu -20 292 1 1720 192 0 7 chr15 40203867 40204159 -61176362 - AluJo SINE Alu -22 290 1 325 212 152 0 chr15 40204327 40204426 -61176095 - MIR SINE MIR -9 253 140 2403 84 7 0 chr15 40204653 40204952 -61175569 - AluSc SINE Alu -8 301 1 283 111 0 0 chr15 40204953 40204998 -61175523 - AluJo SINE Alu -7 295 251 1178 168 20 5 chr15 40204998 40205194 -61175327 - AluJo SINE Alu -113 199 1 406 244 63 24 chr15 40205279 40205406 -61175115 + MLT1J LTR MaLR 377 508 -3 309 237 102 42 chr15 40205409 40205527 -61174994 - MIR SINE MIR -119 143 19 717 175 76 29 chr15 40205597 40205768 -61174753 - LTR16A LTR ERVL -256 194 16 268 318 28 9 chr15 40205797 40205904 -61174617 - MER117 DNA MER1_type -32 165 57 2208 120 0 0 chr15 40205907 40206208 -61174313 - AluSg SINE Alu -9 301 1 1151 227 25 43 chr15 40206254 40206532 -61173989 + LTR16A LTR ERVL 178 450 0 550 271 78 92 chr15 40206687 40207054 -61173467 + MLT1K LTR MaLR 154 516 -72 2369 94 7 0 chr15 40207054 40207352 -61173169 - AluSg SINE Alu -10 300 1 550 271 78 92 chr15 40207352 40207420 -61173101 + MLT1K LTR MaLR 516 583 -5 2338 109 0 0 chr15 40207650 40207954 -61172567 - AluSc SINE Alu -5 304 1 1785 145 13 35 chr15 40208100 40208417 -61172104 + AluJb SINE Alu 1 310 -2 3050 126 84 0 chr15 40208515 40209015 -61171506 - L1MC3 LINE L1 0 7785 7244 2889 13 0 0 chr15 40209154 40209465 -61171056 + AluY SINE Alu 1 311 0 215 167 347 0 chr15 40209510 40209582 -61170939 + MIR SINE MIR 65 161 -101 1090 138 0 0 chr15 40209724 40209884 -61170637 - AluSg/x SINE Alu -16 294 135 202 245 0 0 chr15 40210556 40210605 -61169916 + MIR SINE MIR 93 141 -121 1194 45 0 0 chr15 40211244 40211401 -61169120 + (GA)n Simple_repeat Simple_repeat 1 157 0 2286 87 3 7 chr15 40213309 40213629 -61166892 - AluSp SINE Alu 0 319 1 993 166 41 6 chr15 40213635 40213804 -61166717 - FAM SINE Alu 0 175 1 427 266 26 0 chr15 40214410 40214523 -61165998 - MER103 DNA DNA -43 123 8 231 114 0 0 chr15 40214694 40214729 -61165792 + (TA)n Simple_repeat Simple_repeat 2 36 0 2366 82 3 0 chr15 40214729 40215022 -61165499 - AluY SINE Alu -17 294 1 629 192 23 15 chr15 40215047 40215177 -61165344 - FLAM_C SINE Alu 0 133 3 1759 164 30 7 chr15 40215329 40215634 -61164887 - AluJo SINE Alu 0 312 1 348 169 136 0 chr15 40215689 40215748 -61164773 - AluJ/FLAM SINE Alu -235 67 1 3779 134 108 143 chr15 40215752 40216322 -61164199 - L1MC3 LINE L1 -27 7758 7169 227 296 57 0 chr15 40216322 40216410 -61164111 - MLT1F1 LTR MaLR -442 125 33 3779 134 108 143 chr15 40216410 40216822 -61163699 - L1MC3 LINE L1 -616 7169 6727 1802 112 34 99 chr15 40216822 40216959 -61163562 + AluSx SINE Alu 1 145 -167 2354 84 7 7 chr15 40216959 40217256 -61163265 + AluSg SINE Alu 1 297 -13 1802 112 34 99 chr15 40217256 40217440 -61163081 + AluSx SINE Alu 145 301 -11 3779 134 108 143 chr15 40217440 40217475 -61163046 - L1MC3 LINE L1 -1058 6727 6692 2114 131 3 0 chr15 40217608 40217906 -61162615 - AluSx SINE Alu -13 299 1 1994 164 58 26 chr15 40218048 40218426 -61162095 - MLT1B LTR MaLR 0 390 1 333 47 0 0 chr15 40218438 40218481 -61162040 + (CA)n Simple_repeat Simple_repeat 1 43 0 920 232 0 17 chr15 40218568 40218745 -61161776 - FAM SINE Alu -1 174 1 201 74 0 0 chr15 40218876 40218903 -61161618 + (CA)n Simple_repeat Simple_repeat 2 28 0 182 256 134 12 chr15 40219069 40219151 -61161370 + MIR SINE MIR 143 234 -28 2389 73 0 32 chr15 40220080 40220396 -61160125 - AluY SINE Alu -5 306 1 2362 96 0 10 chr15 40220396 40220697 -61159824 - AluSg SINE Alu -12 298 1 2334 102 0 37 chr15 40220780 40221104 -61159417 - AluSq SINE Alu -1 312 1 1591 171 72 103 chr15 40221300 40221775 -61158746 + MLT1C LTR MaLR 8 467 0 2119 90 0 0 chr15 40221821 40222087 -61158434 - AluSx SINE Alu -12 300 35 201 286 269 25 chr15 40222121 40222240 -61158281 + MIR3 SINE MIR 2 149 -59 1534 214 23 0 chr15 40222352 40222656 -61157865 + AluJo SINE Alu 1 311 -1 494 188 15 15 chr15 40222673 40222806 -61157715 + GA-rich Low_complexity Low_complexity 1 133 0 645 159 0 9 chr15 40223674 40223781 -61156740 - FRAM SINE Alu -77 99 1 192 184 46 83 chr15 40223784 40223893 -61156628 + L2 LINE L2 1945 2049 -1265 180 351 22 60 chr15 40223950 40224084 -61156437 - L2 LINE L2 0 3313 3185 1030 146 0 7 chr15 40224290 40224481 -61156040 + AluSg/x SINE Alu 131 320 0 1720 166 6 45 chr15 40224903 40225071 -61155450 - AluJo SINE Alu -11 301 149 2072 131 24 0 chr15 40225071 40225368 -61155153 - AluSx SINE Alu -8 304 1 1720 166 6 45 chr15 40225368 40225512 -61155009 - AluJo SINE Alu -163 149 1 9902 115 64 78 chr15 40225514 40225569 -61154952 - Tigger1 DNA MER2_type -628 1790 1736 2433 100 3 0 chr15 40225569 40225880 -61154641 - AluSq SINE Alu -1 312 1 9902 115 64 78 chr15 40225880 40225920 -61154601 - Tigger1 DNA MER2_type -682 1736 1697 1533 183 11 11 chr15 40225920 40226193 -61154328 - AluJo SINE Alu -39 273 1 9902 115 64 78 chr15 40226193 40226348 -61154173 - Tigger1 DNA MER2_type -721 1697 1541 1709 162 39 7 chr15 40226348 40226632 -61153889 - AluJb SINE Alu -19 293 1 9902 115 64 78 chr15 40226632 40226646 -61153875 - Tigger1 DNA MER2_type -877 1541 1528 1844 162 7 0 chr15 40226646 40226936 -61153585 - AluJb SINE Alu -20 292 1 9902 115 64 78 chr15 40226936 40228483 -61152038 - Tigger1 DNA MER2_type -890 1528 1 2412 89 0 0 chr15 40228548 40228850 -61151671 - AluY SINE Alu -9 302 1 3359 140 35 12 chr15 40229380 40229953 -61150568 - L1MB4 LINE L1 -2 6178 5593 771 203 43 0 chr15 40229953 40230091 -61150430 - AluJb SINE Alu -24 288 145 2452 135 30 17 chr15 40230091 40230635 -61149886 + L1MA9 LINE L1 5107 5658 -633 593 133 23 10 chr15 40230635 40230806 -61149715 + L1MA9 LINE L1 5974 6302 -10 717 297 72 14 chr15 40230986 40231208 -61149313 - MIR SINE MIR 0 262 28 2065 140 0 0 chr15 40231230 40231522 -61148999 - AluSx SINE Alu -20 292 1 1100 147 82 82 chr15 40231701 40231769 -61148752 + AluJo SINE Alu 40 107 -205 204 40 0 0 chr15 40231769 40231794 -61148727 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 303 28 0 0 chr15 40231793 40231829 -61148692 + (TA)n Simple_repeat Simple_repeat 1 36 0 1100 147 82 82 chr15 40231794 40231828 -61148693 + AluJo SINE Alu 107 140 -172 315 49 0 0 chr15 40231828 40231869 -61148652 + (CA)n Simple_repeat Simple_repeat 2 42 0 1100 147 82 82 chr15 40231869 40232045 -61148476 + AluJo SINE Alu 139 284 -28 2299 103 0 0 chr15 40232075 40232375 -61148146 + AluSg SINE Alu 1 300 -10 250 278 78 11 chr15 40232849 40232939 -61147582 - MLT1I LTR MaLR -311 98 3 2167 98 0 0 chr15 40233008 40233283 -61147238 - AluSx SINE Alu -32 280 6 558 324 159 22 chr15 40233401 40233990 -61146531 + L2 LINE L2 925 1673 -1641 2142 96 3 23 chr15 40234002 40234137 -61146384 + AluSq SINE Alu 1 137 -176 2287 96 3 3 chr15 40234137 40234438 -61146083 + AluSg SINE Alu 1 301 -9 2142 96 3 23 chr15 40234438 40234603 -61145918 + AluSq SINE Alu 137 295 -18 229 343 121 0 chr15 40234733 40234940 -61145581 + L2 LINE L2 2037 2268 -1046 281 278 14 0 chr15 40234942 40235014 -61145507 + L2 LINE L2 3188 3260 -12 229 247 55 41 chr15 40235091 40235164 -61145357 + L2 LINE L2 3197 3270 -2 2550 78 0 0 chr15 40235294 40235603 -61144918 + AluY SINE Alu 1 309 -2 2343 104 0 0 chr15 40235615 40235914 -61144607 + AluSq SINE Alu 1 299 -14 613 221 0 21 chr15 40236168 40236313 -61144208 + MIR SINE MIR 121 262 0 466 260 120 7 chr15 40236366 40236516 -61144005 + MER5B DNA MER1_type 2 168 -10 409 136 0 0 chr15 40237626 40237685 -61142836 + AluJ SINE Alu 75 133 -179 2355 76 0 3 chr15 40237812 40238114 -61142407 + AluSg SINE Alu 1 301 -9 1042 199 0 5 chr15 40238122 40238313 -61142208 + AluJb SINE Alu 82 271 -41 1142 180 0 6 chr15 40238539 40238722 -61141799 + AluJ SINE Alu 108 289 -23 498 329 110 48 chr15 40238950 40239260 -61141261 + L2 LINE L2 2175 2503 -811 1392 172 132 17 chr15 40239345 40239641 -61140880 - MER58B DNA MER1_type -11 330 1 389 323 82 65 chr15 40239647 40239764 -61140757 + L2 LINE L2 2592 2706 -566 2053 146 0 3 chr15 40239764 40240065 -61140456 + AluSx SINE Alu 1 300 -12 389 323 82 65 chr15 40240065 40240556 -61139965 + L2 LINE L2 2706 3207 -65 1651 179 10 30 chr15 40240557 40240858 -61139663 - AluJo SINE Alu -17 295 1 1807 176 0 7 chr15 40240921 40241227 -61139294 - AluJb SINE Alu -8 304 1 1865 181 0 36 chr15 40241253 40241640 -61138881 - L1MB7 LINE L1 -19 6165 5793 1660 162 23 43 chr15 40241641 40241943 -61138578 - AluJo SINE Alu -16 296 1 246 402 60 21 chr15 40242136 40242370 -61138151 + L2 LINE L2 2815 3057 -215 1799 159 14 0 chr15 40242528 40242823 -61137698 + AluJo SINE Alu 1 299 -13 721 203 10 45 chr15 40242835 40243110 -61137411 + L1MD2 LINE L1 6034 6349 -10 1625 180 20 27 chr15 40243110 40243404 -61137117 + AluJb SINE Alu 1 292 -20 2112 113 3 0 chr15 40243424 40243715 -61136806 + AluSx SINE Alu 1 292 -20 181 87 22 43 chr15 40244804 40244850 -61135671 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr15 40245767 40245795 -61134726 + AT_rich Low_complexity Low_complexity 1 28 0 1286 69 6 0 chr15 40246358 40246518 -61134003 - L1PA12 LINE L1 0 6168 6008 2409 88 0 7 chr15 40247320 40247627 -61132894 + AluSg SINE Alu 1 305 -5 21 0 0 0 chr15 40247982 40248003 -61132518 + AT_rich Low_complexity Low_complexity 1 21 0 1272 189 7 33 chr15 40248009 40248310 -61132211 + AluJo SINE Alu 1 293 -19 1624 178 0 14 chr15 40249447 40249722 -61130799 + AluJo SINE Alu 11 281 -31 2430 37 0 37 chr15 40249722 40250015 -61130506 - AluY SINE Alu -12 299 17 198 0 0 0 chr15 40250030 40250052 -61130469 + (A)n Simple_repeat Simple_repeat 1 22 0 2339 95 3 3 chr15 40250052 40250356 -61130165 + AluSp SINE Alu 1 304 -9 1039 191 10 21 chr15 40250377 40250571 -61129950 + AluJb SINE Alu 112 303 -9 1930 148 0 19 chr15 40250820 40251138 -61129383 - AluSx SINE Alu 0 312 1 28 91 0 0 chr15 40251901 40251978 -61128543 + AT_rich Low_complexity Low_complexity 1 77 0 2181 117 0 10 chr15 40252096 40252395 -61128126 + AluSx SINE Alu 1 296 -16 21 57 0 0 chr15 40252426 40252461 -61128060 + AT_rich Low_complexity Low_complexity 1 35 0 2351 75 3 0 chr15 40252758 40253053 -61127468 - AluY SINE Alu -15 296 1 2411 78 3 0 chr15 40253540 40253836 -61126685 - AluY SINE Alu -14 297 1 25 0 0 0 chr15 40254221 40254246 -61126275 + AT_rich Low_complexity Low_complexity 1 25 0 1029 236 82 0 chr15 40254282 40254515 -61126006 + MER58 DNA MER1_type 2 253 -2167 1145 131 98 95 chr15 40254515 40254571 -61125950 + L1MD3 LINE L1 7690 7744 -251 1973 125 3 22 chr15 40254571 40254882 -61125639 + AluSg SINE Alu 1 305 -5 1145 131 98 95 chr15 40254882 40255130 -61125391 + L1MD3 LINE L1 7744 7995 0 22 0 0 0 chr15 40255183 40255205 -61125316 + AT_rich Low_complexity Low_complexity 1 22 0 242 325 0 13 chr15 40255555 40255632 -61124889 + MIR SINE MIR 28 103 -159 2380 99 0 0 chr15 40255632 40255934 -61124587 - AluSg SINE Alu -8 302 1 2164 96 7 3 chr15 40255947 40256238 -61124283 - AluY SINE Alu -19 292 1 270 287 11 11 chr15 40256421 40256508 -61124013 - AluY SINE Alu -201 100 14 2508 72 0 0 chr15 40256736 40257042 -61123479 + AluY SINE Alu 1 306 -5 180 0 0 0 chr15 40259436 40259456 -61121065 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2045 123 3 10 chr15 40259456 40259739 -61120782 - AluSx SINE Alu -29 283 1 1629 162 46 39 chr15 40259750 40259909 -61120612 - AluJb SINE Alu -26 286 123 1935 175 0 6 chr15 40259909 40260223 -61120298 - AluJb SINE Alu 0 312 1 1629 162 46 39 chr15 40260223 40260347 -61120174 - AluJb SINE Alu -189 123 1 1402 193 58 0 chr15 40260384 40260659 -61119862 - AluJo SINE Alu -21 291 1 1125 210 16 0 chr15 40260665 40260851 -61119670 + MER5A DNA MER1_type 1 189 0 2486 88 0 0 chr15 40261174 40261480 -61119041 - AluY SINE Alu -4 307 2 2298 79 7 13 chr15 40261793 40262097 -61118424 - AluSg1 SINE Alu -7 302 1 1898 146 3 37 chr15 40262345 40262668 -61117853 - AluJo SINE Alu 0 312 1 236 239 0 45 chr15 40262860 40262927 -61117594 + L2 LINE L2 3201 3264 -8 615 255 193 9 chr15 40262941 40263153 -61117368 + MIR SINE MIR 12 262 0 2007 104 54 0 chr15 40263153 40263433 -61117088 + AluSq SINE Alu 1 295 -18 2294 109 7 0 chr15 40263645 40263948 -61116573 + AluSx SINE Alu 1 305 -7 1857 144 3 30 chr15 40264070 40264375 -61116146 + AluJb SINE Alu 1 297 -15 240 111 0 0 chr15 40264377 40264413 -61116108 + (TA)n Simple_repeat Simple_repeat 1 36 0 899 214 0 0 chr15 40264681 40264849 -61115672 - FRAM SINE Alu -1 175 8 24 0 0 0 chr15 40264858 40264882 -61115639 + AT_rich Low_complexity Low_complexity 1 24 0 2191 61 0 103 chr15 40264882 40265212 -61115309 - AluY SINE Alu -15 296 1 1292 98 0 0 chr15 40265214 40265378 -61115143 - AluSq SINE Alu -16 297 134 1988 85 53 11 chr15 40265378 40265661 -61114860 - AluY SINE Alu -16 295 1 191 62 62 0 chr15 40265934 40265966 -61114555 + T-rich Low_complexity Low_complexity 3 36 0 216 0 0 0 chr15 40266000 40266024 -61114497 + (TG)n Simple_repeat Simple_repeat 1 24 0 2165 104 0 4 chr15 40266024 40266304 -61114217 - AluSx SINE Alu -33 279 1 617 250 17 40 chr15 40266368 40266544 -61113977 - MER5B DNA MER1_type 0 178 7 1046 217 9 24 chr15 40266572 40266784 -61113737 - MER3 DNA MER1_type 0 209 1 21 36 0 0 chr15 40266917 40266945 -61113576 + AT_rich Low_complexity Low_complexity 1 28 0 1716 173 25 3 chr15 40266949 40267233 -61113288 + AluJo SINE Alu 1 290 -22 198 0 0 0 chr15 40267233 40267255 -61113266 + (GA)n Simple_repeat Simple_repeat 2 23 0 8656 181 66 15 chr15 40267255 40268866 -61111655 + L1MA3 LINE L1 17 1710 -5855 1042 168 0 0 chr15 40268866 40269021 -61111500 + AluJb SINE Alu 147 301 -11 15462 154 21 57 chr15 40269021 40269079 -61111442 + L1MA3 LINE L1 3627 3686 -4038 2525 60 3 0 chr15 40269079 40269378 -61111143 + AluSp SINE Alu 1 300 -13 15462 154 21 57 chr15 40269378 40271396 -61109125 + L1MA3 LINE L1 3686 5775 -1949 2466 76 0 3 chr15 40271396 40271700 -61108821 + AluY SINE Alu 1 303 -8 15462 154 21 57 chr15 40271700 40272731 -61107790 + L1MA3 LINE L1 5775 6540 -1184 2282 105 20 0 chr15 40272731 40273036 -61107485 + AluSq SINE Alu 1 311 -2 15462 154 21 57 chr15 40273036 40274179 -61106342 + L1MA3 LINE L1 6540 7723 -1 413 180 22 11 chr15 40274244 40274333 -61106188 + L1MC1 LINE L1 2639 2728 -3418 1768 30 0 0 chr15 40274337 40274591 -61105930 + L1PA4 LINE L1 5929 6182 0 237 259 12 0 chr15 40274625 40274706 -61105815 + L1MC1 LINE L1 2752 2833 -3313 9393 223 28 27 chr15 40276016 40276990 -61103531 + L1MC1 LINE L1 2821 3793 -2353 1653 160 32 55 chr15 40276990 40277302 -61103219 + AluJo SINE Alu 1 305 -7 9393 223 28 27 chr15 40277302 40278174 -61102347 + L1MC1 LINE L1 3793 4663 -1483 2125 130 3 0 chr15 40278174 40278475 -61102046 + AluSx SINE Alu 2 303 -9 9393 223 28 27 chr15 40278475 40278976 -61101545 + L1MC1 LINE L1 4663 5173 -973 2249 79 23 3 chr15 40278976 40279279 -61101242 + AluY SINE Alu 1 309 -2 9393 223 28 27 chr15 40279279 40279403 -61101118 + L1MC1 LINE L1 5173 5295 -851 476 85 0 0 chr15 40279408 40279722 -61100799 + AluSg1 SINE Alu 2 315 0 32539 27 3 0 chr15 40279722 40284309 -61096212 + L1PA3 LINE L1 1556 6155 0 5593 149 39 33 chr15 40284306 40284343 -61096178 + L1MC1 LINE L1 5264 5299 -1034 * 1854 141 0 40 chr15 40284343 40284647 -61095874 + AluSx SINE Alu 1 292 -20 981 207 0 0 chr15 40284652 40284816 -61095705 + FRAM SINE Alu 3 166 0 5593 149 39 33 chr15 40284816 40285346 -61095175 + L1MC1 LINE L1 5302 5850 -483 1636 194 27 13 chr15 40285346 40285645 -61094876 + AluJb SINE Alu 1 303 -9 5593 149 39 33 chr15 40285645 40286112 -61094409 + L1MC1 LINE L1 5850 6312 -21 2577 58 0 0 chr15 40286117 40286425 -61094096 + AluY SINE Alu 1 308 -3 1670 158 37 7 chr15 40286474 40286746 -61093775 + AluJo SINE Alu 14 293 -19 828 241 12 6 chr15 40286817 40286979 -61093542 + FRAM SINE Alu 1 163 -13 27 0 0 0 chr15 40287108 40287135 -61093386 + AT_rich Low_complexity Low_complexity 1 27 0 672 200 118 0 chr15 40287177 40287367 -61093154 + MER58A DNA MER1_type 42 224 0 1731 250 46 78 chr15 40287389 40287615 -61092906 - L1MEc LINE L1 -4621 2204 1972 2211 92 14 3 chr15 40287615 40287907 -61092614 + AluSc SINE Alu 1 295 -14 1731 250 46 78 chr15 40287907 40288237 -61092284 - L1MEc LINE L1 -4853 1972 1633 1521 136 0 56 chr15 40288237 40288509 -61092012 - AluSx SINE Alu 0 302 45 1731 250 46 78 chr15 40288509 40288994 -61091527 - L1MEc LINE L1 -5192 1633 1057 257 88 0 0 chr15 40289110 40289144 -61091377 - MLT2A2 LTR ERVL -7 446 413 483 27 27 14 chr15 40289145 40289219 -61091302 + (TA)n Simple_repeat Simple_repeat 1 75 0 312 137 0 0 chr15 40289286 40289337 -61091184 + (TG)n Simple_repeat Simple_repeat 2 52 0 225 207 0 17 chr15 40289338 40289396 -61091125 + L1MC4 LINE L1 6667 6723 -1319 734 181 105 59 chr15 40289406 40289644 -61090877 + L2 LINE L2 3022 3270 -43 688 101 0 0 chr15 40289644 40289733 -61090788 + AluSg SINE Alu 2 90 -220 231 105 88 53 chr15 40289743 40289800 -61090721 - L1MCa LINE L1 -4362 2064 2006 225 0 0 0 chr15 40289800 40289825 -61090696 + (CA)n Simple_repeat Simple_repeat 1 25 0 243 0 0 0 chr15 40289825 40289859 -61090662 - MLT2A1 LTR ERVL -44 400 367 236 196 0 0 chr15 40289862 40289908 -61090613 + Alu SINE Alu 252 297 -4 2789 91 22 25 chr15 40289967 40290374 -61090147 - MLT2A1 LTR ERVL -38 406 1 821 221 0 0 chr15 40290513 40290658 -61089863 + FRAM SINE Alu 1 140 -36 1285 206 8 4 chr15 40290813 40291061 -61089460 - AluJo SINE Alu -63 249 1 250 279 44 95 chr15 40291153 40291311 -61089210 - L1MEc LINE L1 -5969 856 707 331 331 26 7 chr15 40291314 40291468 -61089053 - L1MEc LINE L1 -6203 622 466 500 293 54 78 chr15 40292008 40292250 -61088271 - MIR SINE MIR -8 254 19 260 289 289 8 chr15 40292262 40292390 -61088131 - MER5B DNA MER1_type -14 164 1 1015 215 198 38 chr15 40292877 40293277 -61087244 + L2 LINE L2 2809 3272 -41 2616 24 0 0 chr15 40293277 40293568 -61086953 + AluY SINE Alu 1 291 -20 2246 118 0 0 chr15 40293575 40293880 -61086641 + AluSg SINE Alu 1 305 -5 2095 134 0 0 chr15 40293920 40294233 -61086288 + AluSx SINE Alu 1 313 0 248 146 0 0 chr15 40294427 40294468 -61086053 - MSTA LTR MaLR 0 428 388 871 154 0 0 chr15 40294468 40294585 -61085936 + FLAM_C SINE Alu 1 117 -16 2355 103 92 8 chr15 40294613 40294983 -61085538 - MSTA LTR MaLR -27 401 1 2106 112 0 11 chr15 40295106 40295420 -61085101 - AluSg SINE Alu 0 311 1 1605 171 20 30 chr15 40295596 40295895 -61084626 + AluJo SINE Alu 1 296 -16 2271 67 14 3 chr15 40296056 40296362 -61084159 + AluSp SINE Alu 1 309 0 1350 189 102 4 chr15 40296381 40296645 -61083876 - AluJo SINE Alu -18 294 5 23 0 0 0 chr15 40296874 40296897 -61083624 + AT_rich Low_complexity Low_complexity 1 23 0 1816 187 3 0 chr15 40297192 40297492 -61083029 + AluJo SINE Alu 1 301 -11 1583 170 0 11 chr15 40297504 40297775 -61082746 - AluSx SINE Alu -44 268 1 344 267 131 29 chr15 40297902 40298108 -61082413 + L1ME4a LINE L1 5874 6100 -21 2193 73 0 25 chr15 40298115 40298454 -61082067 - AluY SINE Alu 0 334 3 1572 114 0 9 chr15 40298456 40298676 -61081845 - AluSq SINE Alu -11 302 85 2137 125 14 3 chr15 40298849 40299146 -61081375 - AluSg SINE Alu -10 300 1 445 252 61 0 chr15 40299149 40299264 -61081257 - L2 LINE L2 -1 3312 3191 1963 123 0 23 chr15 40299296 40299596 -61080925 + AluSx SINE Alu 1 293 -19 180 0 0 0 chr15 40299720 40299740 -61080781 + (T)n Simple_repeat Simple_repeat 1 20 0 22 56 0 0 chr15 40300853 40300889 -61079632 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr15 40301719 40301745 -61078776 + AT_rich Low_complexity Low_complexity 1 26 0 959 107 0 8 chr15 40301923 40302054 -61078467 - FLAM_C SINE Alu -3 130 1 2148 103 0 67 chr15 40302398 40302728 -61077793 - AluSx SINE Alu -4 308 1 1196 110 12 0 chr15 40302882 40303045 -61077476 + AluSg/x SINE Alu 141 305 -7 249 149 45 0 chr15 40303194 40303261 -61077260 + (TA)n Simple_repeat Simple_repeat 2 71 0 255 307 78 45 chr15 40303404 40303583 -61076938 - L1ME LINE L1 -463 5658 5474 1766 190 0 13 chr15 40303765 40304081 -61076440 - AluJo SINE Alu 0 312 1 25 0 0 0 chr15 40304179 40304204 -61076317 + AT_rich Low_complexity Low_complexity 1 25 0 4694 170 40 75 chr15 40304219 40304432 -61076089 - L1MB5 LINE L1 -28 6146 5927 2253 103 0 13 chr15 40304432 40304566 -61075955 + AluSc SINE Alu 1 135 -174 2490 58 0 3 chr15 40304566 40304861 -61075660 + AluY SINE Alu 1 294 -17 2253 103 0 13 chr15 40304861 40305026 -61075495 + AluSc SINE Alu 135 296 -13 4694 170 40 75 chr15 40305026 40305661 -61074860 - L1MB5 LINE L1 -247 5927 5271 1618 177 0 40 chr15 40305661 40305960 -61074561 - AluJo SINE Alu -25 287 1 4694 170 40 75 chr15 40305960 40306690 -61073831 - L1MB5 LINE L1 -903 5271 4517 1823 176 3 7 chr15 40306690 40306992 -61073529 + AluJo SINE Alu 1 301 -11 1955 147 0 26 chr15 40306994 40307306 -61073215 + AluJb SINE Alu 1 304 -8 4694 170 40 75 chr15 40307306 40307582 -61072939 - L1MB5 LINE L1 -1658 4516 4331 2087 133 7 0 chr15 40307582 40307883 -61072638 + AluSx SINE Alu 1 303 -9 4694 170 40 75 chr15 40307883 40307926 -61072595 - L1MB5 LINE L1 -1843 4331 4288 806 118 0 0 chr15 40308071 40308181 -61072340 - AluSg/x SINE Alu -13 297 188 1610 104 9 0 chr15 40308183 40308394 -61072127 + AluSg/x SINE Alu 87 299 -11 21 36 0 0 chr15 40308458 40308486 -61072035 + AT_rich Low_complexity Low_complexity 1 28 0 1982 140 7 0 chr15 40308495 40308787 -61071734 + AluJb SINE Alu 1 294 -18 657 204 9 9 chr15 40308798 40308911 -61071610 - FLAM_A SINE Alu -17 116 4 2419 68 0 7 chr15 40308923 40309218 -61071303 - AluY SINE Alu -18 293 1 1824 157 7 0 chr15 40309349 40309659 -61070862 + AluSx SINE Alu 1 312 0 1872 162 10 3 chr15 40309779 40310081 -61070440 - AluJb SINE Alu -8 304 1 2417 76 3 13 chr15 40310667 40310970 -61069551 - AluSp SINE Alu -13 300 1 728 193 41 7 chr15 40310970 40311115 -61069406 - MSTC LTR MaLR -215 150 1 541 252 34 68 chr15 40311278 40311334 -61069187 + L1M4 LINE L1 3182 3238 -2908 2473 63 0 10 chr15 40311334 40311635 -61068886 + AluY SINE Alu 1 298 -13 541 252 34 68 chr15 40311635 40311900 -61068621 + L1M4 LINE L1 3238 3492 -2654 1016 151 5 16 chr15 40311941 40312152 -61068369 - AluSp SINE Alu 0 311 103 2165 118 0 0 chr15 40312546 40312843 -61067678 - AluSx SINE Alu -15 297 1 2084 117 28 7 chr15 40312852 40313142 -61067379 - AluSx SINE Alu -16 296 1 866 134 17 0 chr15 40313165 40313284 -61067237 + FLAM_C SINE Alu 2 122 -11 21 0 0 0 chr15 40314062 40314083 -61066438 + AT_rich Low_complexity Low_complexity 1 21 0 1689 192 7 3 chr15 40314089 40314381 -61066140 + AluJb SINE Alu 1 293 -19 1624 178 0 14 chr15 40315518 40315793 -61064728 + AluJo SINE Alu 11 281 -31 2562 29 0 35 chr15 40315793 40316102 -61064419 - AluY SINE Alu -12 299 1 5239 64 8 7 chr15 40316102 40316819 -61063702 - L1P LINE L1 -2402 3744 3027 2173 132 7 0 chr15 40316819 40317129 -61063392 - AluJb SINE Alu 0 312 1 2364 125 115 14 chr15 40317130 40317546 -61062975 - Tigger1 DNA MER2_type -1353 1065 608 1993 121 0 7 chr15 40317584 40317866 -61062655 - AluSx SINE Alu -32 280 1 290 350 25 45 chr15 40318461 40318618 -61061903 + L2 LINE L2 3158 3311 -2 27 49 0 0 chr15 40318893 40318934 -61061587 + AT_rich Low_complexity Low_complexity 1 41 0 2361 52 7 3 chr15 40319198 40319487 -61061034 + AluY SINE Alu 1 290 -21 198 294 69 29 chr15 40319857 40319959 -61060562 + MIR SINE MIR 19 124 -84 2325 92 3 0 chr15 40320054 40320360 -61060161 - AluSc SINE Alu -2 307 1 202 93 0 70 chr15 40320630 40320673 -61059848 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 217 313 188 0 chr15 40320814 40320926 -61059595 - L3 LINE CR1 -80 1497 1365 1166 160 11 5 chr15 40321162 40321349 -61059172 - Tigger2a DNA MER2_type -1 443 256 1353 176 0 98 chr15 40321351 40321647 -61058874 - AluJo SINE Alu -22 290 24 1475 114 84 4 chr15 40321657 40321894 -61058627 - Tigger2a DNA MER2_type -176 258 3 1179 205 64 8 chr15 40321932 40322181 -61058340 - AluJb SINE Alu -49 263 1 1948 189 9 46 chr15 40322285 40322635 -61057886 - MER1B DNA MER1_type 0 337 1 1958 146 13 0 chr15 40322654 40322955 -61057566 - AluSx SINE Alu -7 305 1 180 0 0 0 chr15 40323092 40323112 -61057409 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 2053 117 0 4 chr15 40323112 40323393 -61057128 - AluSx SINE Alu -32 280 1 357 348 68 39 chr15 40323398 40323708 -61056813 - L3 LINE CR1 -1004 573 255 198 143 0 0 chr15 40323882 40323917 -61056604 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1195 123 0 0 chr15 40323960 40324123 -61056398 - AluSp SINE Alu -12 301 139 915 235 83 13 chr15 40324142 40324372 -61056149 - MIR SINE MIR -15 247 2 930 180 53 121 chr15 40324446 40324675 -61055846 - MLT1B LTR MaLR -65 325 125 1949 114 18 7 chr15 40324675 40324955 -61055566 - AluSx SINE Alu -29 283 1 930 180 53 121 chr15 40324955 40325064 -61055457 - MLT1B LTR MaLR -265 125 10 266 288 96 14 chr15 40325436 40325582 -61054939 + MER112 DNA MER1_type 99 256 -4 1704 104 4 4 chr15 40325662 40325892 -61054629 - AluSx SINE Alu -10 300 71 2177 105 7 7 chr15 40325892 40326186 -61054335 - AluSx SINE Alu -16 296 1 527 145 40 0 chr15 40326187 40326263 -61054258 - AluSx SINE Alu -233 80 2 1713 164 58 60 chr15 40326440 40326612 -61053909 - MER7A DNA MER2_type -2693 345 174 2153 57 43 29 chr15 40326612 40326912 -61053609 + AluY SINE Alu 1 304 0 1713 164 58 60 chr15 40326912 40327085 -61053436 - MER7A DNA MER2_type -2864 174 2 433 95 48 0 chr15 40327113 40327176 -61053345 + L1MC4a LINE L1 6672 6737 -1071 1514 246 175 33 chr15 40327183 40327517 -61053004 - L1M4 LINE L1 -1908 4238 3953 2289 114 0 3 chr15 40327517 40327825 -61052696 - AluSx SINE Alu -5 307 1 1514 246 175 33 chr15 40327825 40328526 -61051995 - L1M4 LINE L1 -2193 3953 3056 659 226 122 38 chr15 40328526 40328671 -61051850 - MER58 DNA MER1_type 0 2420 2289 2678 194 61 8 chr15 40328671 40329193 -61051328 + MER44D DNA MER2_type 1 605 0 659 226 122 38 chr15 40329193 40329347 -61051174 - MER58 DNA MER1_type -131 2289 10 618 197 226 113 chr15 40329358 40329718 -61050803 - L1M4 LINE L1 -3085 3061 2743 294 85 0 0 chr15 40329718 40329765 -61050756 - MER41A LTR ERV1 -86 468 422 2393 59 7 13 chr15 40329766 40330070 -61050451 + AluY SINE Alu 1 302 -9 618 197 226 113 chr15 40330070 40330351 -61050170 - L1M4 LINE L1 -3402 2744 2294 2096 108 27 0 chr15 40330836 40331132 -61049389 - AluSp SINE Alu -9 304 1 2794 255 76 34 chr15 40331134 40331323 -61049198 + L1M4 LINE L1 3543 3723 -2423 2290 91 7 3 chr15 40331323 40331621 -61048900 + AluSx SINE Alu 1 299 -13 2794 255 76 34 chr15 40331621 40332592 -61047929 + L1M4 LINE L1 3723 4752 -1394 594 172 0 0 chr15 40332593 40332707 -61047814 - AluSg/x SINE Alu 0 307 194 2055 112 0 4 chr15 40332707 40332975 -61047546 - AluSx SINE Alu -45 267 1 512 202 11 0 chr15 40332975 40333069 -61047452 - MER2 DNA MER2_type -247 98 4 704 150 21 144 chr15 40333080 40333267 -61047254 - MER77 LTR ERV1 -410 195 32 557 179 19 19 chr15 40333272 40333378 -61047143 - Tigger3(Golem) DNA MER2_type -6 3023 2918 2101 71 41 37 chr15 40333996 40334290 -61046231 - AluY SINE Alu -16 295 1 1057 165 39 127 chr15 40334491 40334542 -61045979 - LTR49-int LTR ERV1 -2856 3131 3077 2213 104 0 0 chr15 40334542 40334846 -61045675 + AluSc SINE Alu 1 304 0 1057 165 39 127 chr15 40334846 40335055 -61045466 - LTR49-int LTR ERV1 -2910 3077 1880 2032 129 7 10 chr15 40335055 40335349 -61045172 + AluSx SINE Alu 1 293 -19 21 36 0 0 chr15 40335349 40335377 -61045144 + AT_rich Low_complexity Low_complexity 1 28 0 636 146 0 27 chr15 40335434 40335544 -61044977 - LTR49-int LTR ERV1 -3427 2904 2798 2615 61 0 0 chr15 40336180 40336490 -61044031 + AluY SINE Alu 1 310 -1 216 0 0 0 chr15 40336491 40336515 -61044006 + (CA)n Simple_repeat Simple_repeat 1 24 0 267 367 140 21 chr15 40336542 40337022 -61043499 + L2 LINE L2 2081 2617 -697 215 350 0 0 chr15 40337013 40337073 -61043448 - L2 LINE L2 -55 3258 3199 * 868 182 110 0 chr15 40337282 40337436 -61043085 - FRAM SINE Alu -6 170 1 2299 97 0 10 chr15 40337640 40337950 -61042571 - AluSq SINE Alu -6 307 1 2265 76 59 0 chr15 40338695 40338985 -61041536 + AluSq SINE Alu 1 307 -6 183 42 0 0 chr15 40339169 40339193 -61041328 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 1787 109 8 8 chr15 40339301 40339558 -61040963 - AluSp SINE Alu -13 300 44 2390 70 27 0 chr15 40339558 40339857 -61040664 - AluY SINE Alu -3 308 1 207 69 0 0 chr15 40340080 40340109 -61040412 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 798 192 16 0 chr15 40340114 40340239 -61040282 - AluJ SINE Alu -30 282 156 1740 165 46 7 chr15 40340249 40340534 -61039987 - AluJo SINE Alu -16 296 1 28 29 0 0 chr15 40340537 40340572 -61039949 + AT_rich Low_complexity Low_complexity 1 35 0 2311 112 0 0 chr15 40340808 40341112 -61039409 - AluSq SINE Alu -9 304 1 1034 168 0 0 chr15 40341319 40341474 -61039047 - AluJ SINE Alu -157 155 1 2412 80 3 0 chr15 40342145 40342444 -61038077 - AluSp SINE Alu -13 300 1 27 0 0 0 chr15 40342529 40342556 -61037965 + AT_rich Low_complexity Low_complexity 1 27 0 211 274 0 16 chr15 40343628 40343690 -61036831 + L2 LINE L2 3173 3233 -80 322 130 0 0 chr15 40344519 40344565 -61035956 - Alu SINE Alu -8 294 249 2325 105 0 10 chr15 40344590 40344904 -61035617 - AluSx SINE Alu -1 311 1 2077 108 47 3 chr15 40345101 40345397 -61035124 + AluSx SINE Alu 1 309 -3 334 181 128 64 chr15 40345437 40345531 -61034990 + MIR3 SINE MIR 97 196 -12 226 143 54 0 chr15 40346010 40346066 -61034455 + (TA)n Simple_repeat Simple_repeat 2 60 0 412 123 59 6 chr15 40346089 40346259 -61034262 + (TA)n Simple_repeat Simple_repeat 2 180 0 1782 147 0 33 chr15 40346259 40346558 -61033963 - AluJb SINE Alu -23 289 1 900 147 8 0 chr15 40346600 40346729 -61033792 - FLAM_C SINE Alu -1 132 3 2039 119 51 0 chr15 40346739 40347032 -61033489 - AluSg SINE Alu -2 308 1 1846 86 67 11 chr15 40347680 40347970 -61032551 + AluY SINE Alu 1 305 0 2405 60 0 23 chr15 40347979 40348278 -61032243 + AluY SINE Alu 1 292 -19 2185 98 3 16 chr15 40348289 40348606 -61031915 + AluSq SINE Alu 1 313 0 2309 79 0 30 chr15 40348611 40348916 -61031605 + AluSg SINE Alu 2 297 -13 2192 50 36 11 chr15 40349140 40349419 -61031102 + AluY SINE Alu 1 286 -25 1803 155 7 29 chr15 40349598 40349907 -61030614 + AluJb SINE Alu 1 302 -10 2142 140 0 0 chr15 40349997 40350305 -61030216 - AluJb SINE Alu -4 308 1 2005 125 38 0 chr15 40350544 40350832 -61029689 + AluSg SINE Alu 2 300 -10 1490 165 4 4 chr15 40350912 40351182 -61029339 + AluJb SINE Alu 45 314 0 304 192 283 8 chr15 40351487 40351607 -61028914 + L1ME4a LINE L1 5969 6121 0 2241 112 0 0 chr15 40351704 40352000 -61028521 + AluSx SINE Alu 1 296 -16 2155 98 0 76 chr15 40352791 40353119 -61027402 - AluSq SINE Alu -10 303 1 25 0 0 0 chr15 40353412 40353437 -61027084 + AT_rich Low_complexity Low_complexity 1 25 0 2364 92 3 0 chr15 40354865 40355157 -61025364 - AluSx SINE Alu -19 293 1 689 218 75 32 chr15 40355203 40355391 -61025130 - L2 LINE L2 -5 3308 3113 2210 95 7 0 chr15 40355397 40355682 -61024839 + AluSg SINE Alu 1 287 -23 222 293 122 67 chr15 40355752 40355916 -61024605 - L2 LINE L2 -433 2881 2709 2408 59 0 7 chr15 40356060 40356348 -61024173 + AluSg SINE Alu 4 289 -21 2018 135 60 30 chr15 40356371 40356735 -61023786 - THE1C LTR MaLR 0 375 1 2257 56 19 0 chr15 40356895 40357194 -61023327 - AluSc SINE Alu 0 308 5 272 310 112 73 chr15 40357228 40357531 -61022990 - MLT1K LTR MaLR -22 566 252 1696 184 3 30 chr15 40357532 40357831 -61022690 + AluJb SINE Alu 1 291 -21 449 319 144 24 chr15 40357850 40358226 -61022295 + L1MEc LINE L1 35 455 -5941 2137 101 13 13 chr15 40358380 40358678 -61021843 + AluSx SINE Alu 1 298 -14 897 222 90 72 chr15 40358934 40359126 -61021395 + L1MEc LINE L1 666 853 -5422 2632 58 0 0 chr15 40359126 40359434 -61021087 - AluY SINE Alu -3 308 1 1833 140 7 18 chr15 40359436 40359721 -61020800 - AluSx SINE Alu -30 282 1 897 222 90 72 chr15 40359721 40359975 -61020546 + L1MEc LINE L1 853 1165 -5110 714 278 70 41 chr15 40360098 40360299 -61020222 - L2 LINE L2 -7 3306 3112 2156 79 18 7 chr15 40360299 40360600 -61019921 + AluSg SINE Alu 1 304 0 2157 114 7 0 chr15 40360602 40360910 -61019611 + AluSx SINE Alu 1 310 -2 714 278 70 41 chr15 40360910 40360974 -61019547 - L2 LINE L2 -201 3112 3029 382 127 273 67 chr15 40361006 40361067 -61019454 - Charlie5 DNA MER1_type -1 2584 2537 2516 54 0 3 chr15 40361067 40361364 -61019157 - AluY SINE Alu -15 296 1 382 127 273 67 chr15 40361364 40361452 -61019069 - Charlie5 DNA MER1_type -48 2537 2404 2036 106 32 0 chr15 40361452 40361736 -61018785 - AluSg SINE Alu -17 293 1 246 139 0 0 chr15 40361738 40361774 -61018747 + Alu SINE Alu 210 245 -58 1346 140 0 35 chr15 40361774 40362002 -61018519 + AluSg/x SINE Alu 83 302 -8 678 257 250 0 chr15 40362002 40362306 -61018215 - L2 LINE L2 -625 2689 2310 2334 92 0 3 chr15 40362539 40362842 -61017679 - AluSg SINE Alu -8 302 1 2184 123 3 0 chr15 40362846 40363147 -61017374 - AluSx SINE Alu -10 302 1 893 148 0 63 chr15 40363228 40363370 -61017151 + FLAM_A SINE Alu 1 133 0 601 168 35 18 chr15 40363854 40363967 -61016554 - FLAM_C SINE Alu -15 128 14 272 217 63 137 chr15 40364033 40364208 -61016313 + MIR SINE MIR 50 211 -51 800 184 7 0 chr15 40364334 40364475 -61016046 + FRAM SINE Alu 26 167 -9 704 258 61 0 chr15 40364483 40364646 -61015875 + FRAM SINE Alu 1 173 -3 247 308 118 86 chr15 40364969 40365286 -61015235 + L2 LINE L2 2824 3157 -115 2417 45 14 3 chr15 40365286 40365578 -61014943 + AluSg SINE Alu 1 295 -15 247 308 118 86 chr15 40365578 40365643 -61014878 + L2 LINE L2 3157 3218 -54 2262 89 3 3 chr15 40368566 40368858 -61011663 + AluSg SINE Alu 1 292 -18 1376 180 86 7 chr15 40369244 40369522 -61010999 - AluJo SINE Alu -7 305 6 2287 113 0 0 chr15 40369801 40370102 -61010419 - AluSp SINE Alu -12 301 1 922 118 0 29 chr15 40370105 40370241 -61010280 - AluJo/FLAM SINE Alu -169 133 2 2016 94 7 24 chr15 40370673 40371004 -61009517 - AluSq SINE Alu 0 326 1 2141 102 0 7 chr15 40371281 40371597 -61008924 - AluSg SINE Alu 0 314 1 2154 107 0 7 chr15 40371608 40371899 -61008622 - AluSx SINE Alu -23 289 1 1877 138 3 49 chr15 40372011 40372337 -61008184 + AluJb SINE Alu 1 311 -1 236 152 0 0 chr15 40372368 40372401 -61008120 - Alu SINE Alu -266 33 1 258 105 0 0 chr15 40372427 40372465 -61008056 + (CA)n Simple_repeat Simple_repeat 2 39 0 1284 114 0 0 chr15 40372465 40372640 -61007881 - AluSg/x SINE Alu -17 295 121 476 62 0 0 chr15 40372644 40372708 -61007813 - Alu SINE Alu -8 302 239 1801 93 0 17 chr15 40372708 40372945 -61007576 + AluSg SINE Alu 62 294 -16 237 33 0 0 chr15 40373049 40373079 -61007442 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2287 105 0 0 chr15 40373097 40373391 -61007130 + AluSc SINE Alu 1 294 -15 1584 181 7 28 chr15 40373391 40373677 -61006844 - AluJb SINE Alu -31 281 1 27 49 0 0 chr15 40373809 40373850 -61006671 + AT_rich Low_complexity Low_complexity 1 41 0 2258 106 10 0 chr15 40373957 40374258 -61006263 + AluSg SINE Alu 1 304 -6 2095 115 7 0 chr15 40374271 40374567 -61005954 + AluSx SINE Alu 7 304 -8 2384 87 0 0 chr15 40374586 40374884 -61005637 - AluSx SINE Alu -14 298 1 275 204 0 0 chr15 40375230 40375284 -61005237 - L3 LINE CR1 -1 1576 1523 286 386 8 8 chr15 40375492 40375619 -61004902 - MIR3 SINE MIR -53 155 29 2379 89 24 54 chr15 40375833 40376205 -61004316 - MER46B DNA MER2_type 0 236 1 2582 60 0 0 chr15 40376960 40377260 -61003261 + AluY SINE Alu 1 300 -11 371 268 60 127 chr15 40377428 40377742 -61002779 - L2 LINE L2 -775 2539 2247 231 36 0 0 chr15 40378100 40378128 -61002393 + (TTA)n Simple_repeat Simple_repeat 2 29 0 2078 93 3 43 chr15 40378130 40378432 -61002089 - AluSg SINE Alu -15 295 6 579 178 36 23 chr15 40378457 40378647 -61001874 - MER46A DNA MER2_type 0 236 1 24 0 0 0 chr15 40378757 40378781 -61001740 + AT_rich Low_complexity Low_complexity 1 24 0 1543 256 94 27 chr15 40378838 40379162 -61001359 - L1MCc LINE L1 -2461 4480 4179 2309 112 0 0 chr15 40379162 40379474 -61001047 - AluSx SINE Alu 0 312 1 1543 256 94 27 chr15 40379474 40380787 -60999734 - L1MCc LINE L1 -2762 4179 25 2385 78 14 0 chr15 40381147 40381442 -60999079 + AluSx SINE Alu 1 299 -13 1832 166 0 3 chr15 40381672 40381967 -60998554 + AluJb SINE Alu 1 294 -18 2932 192 50 29 chr15 40382064 40382891 -60997630 - L1MB3 LINE L1 -39 6144 5336 1266 202 61 22 chr15 40382891 40383168 -60997353 - AluJo SINE Alu -24 288 1 2932 192 50 29 chr15 40383168 40383278 -60997243 - L1MB3 LINE L1 -847 5336 5230 384 71 0 0 chr15 40383278 40383334 -60997187 + (CA)n Simple_repeat Simple_repeat 1 56 0 1896 166 0 3 chr15 40383334 40383624 -60996897 - AluSx SINE Alu -23 289 1 2932 192 50 29 chr15 40383624 40383757 -60996764 - L1MB3 LINE L1 -952 5231 4912 2431 49 26 16 chr15 40383815 40384122 -60996399 - AluY SINE Alu -1 310 1 1942 151 0 20 chr15 40384163 40384468 -60996053 - AluJb SINE Alu -13 299 1 2190 115 0 3 chr15 40384611 40384915 -60995606 - AluSg SINE Alu -7 303 1 2128 104 31 0 chr15 40384915 40385202 -60995319 - AluSg SINE Alu -14 296 1 2009 127 0 7 chr15 40385324 40385635 -60994886 + AluSx SINE Alu 1 309 0 1871 99 4 0 chr15 40385733 40385976 -60994545 - AluSg SINE Alu -11 299 56 311 229 86 19 chr15 40386117 40386222 -60994299 + MIR SINE MIR 125 236 -26 1784 116 0 36 chr15 40388333 40388609 -60991912 - AluSx SINE Alu -46 266 1 2043 135 7 3 chr15 40388686 40388982 -60991539 + AluSx SINE Alu 1 297 -15 437 262 184 44 chr15 40389238 40389569 -60990952 + L1ME4a LINE L1 5471 5754 -367 2218 114 3 7 chr15 40389569 40389877 -60990644 - AluSx SINE Alu -5 307 1 437 262 184 44 chr15 40389877 40390073 -60990448 + L1ME4a LINE L1 5754 5921 -200 1729 152 6 35 chr15 40390073 40390389 -60990132 - AluJo SINE Alu -5 307 1 437 262 184 44 chr15 40390389 40390429 -60990092 + L1ME4a LINE L1 5921 6119 -2 639 244 83 23 chr15 40390569 40390786 -60989735 - L1M4b LINE L1 -5423 1436 1207 22 35 0 0 chr15 40390786 40390815 -60989706 + AT_rich Low_complexity Low_complexity 1 29 0 348 280 113 34 chr15 40390942 40391181 -60989340 + L1ME4a LINE L1 5617 5874 -247 1346 239 86 40 chr15 40391195 40392034 -60988487 - L1ME2 LINE L1 -172 5992 5122 * 1428 207 30 19 chr15 40392028 40392395 -60988126 - L1ME2 LINE L1 -1898 4248 3878 19502 48 7 7 chr15 40392409 40394819 -60985702 - L1PA5 LINE L1 -5 6149 3742 2718 23 7 3 chr15 40394819 40395129 -60985392 - AluY SINE Alu 0 311 1 19502 48 7 7 chr15 40395129 40395846 -60984675 - L1PA5 LINE L1 -2411 3743 3027 2173 132 7 0 chr15 40395846 40396156 -60984365 - AluJb SINE Alu 0 312 1 2364 125 115 14 chr15 40396157 40396573 -60983948 - Tigger1 DNA MER2_type -1353 1065 608 1993 121 0 7 chr15 40396611 40396893 -60983628 - AluSx SINE Alu -32 280 1 290 350 25 45 chr15 40397488 40397645 -60982876 + L2 LINE L2 3158 3311 -2 27 49 0 0 chr15 40397920 40397961 -60982560 + AT_rich Low_complexity Low_complexity 1 41 0 2361 52 7 3 chr15 40398225 40398514 -60982007 + AluY SINE Alu 1 290 -21 198 294 69 29 chr15 40398884 40398986 -60981535 + MIR SINE MIR 19 124 -84 2326 92 3 0 chr15 40399081 40399387 -60981134 - AluSc SINE Alu -2 307 1 202 93 0 70 chr15 40399657 40399700 -60980821 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 217 313 188 0 chr15 40399841 40399953 -60980568 - L3 LINE CR1 -80 1497 1365 1166 160 11 5 chr15 40400190 40400377 -60980144 - Tigger2a DNA MER2_type -1 443 256 1353 176 0 98 chr15 40400379 40400675 -60979846 - AluJo SINE Alu -22 290 24 1475 114 84 4 chr15 40400685 40400922 -60979599 - Tigger2a DNA MER2_type -176 258 3 1192 201 64 8 chr15 40400960 40401209 -60979312 - AluJb SINE Alu -49 263 1 1948 189 9 46 chr15 40401313 40401663 -60978858 - MER1B DNA MER1_type 0 337 1 2257 119 7 0 chr15 40401687 40401997 -60978524 - AluSx SINE Alu 0 312 1 180 0 0 0 chr15 40402134 40402154 -60978367 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 2128 114 0 0 chr15 40402154 40402434 -60978087 - AluSx SINE Alu -32 280 1 357 348 68 39 chr15 40402439 40402749 -60977772 - L3 LINE CR1 -1004 573 255 198 143 0 0 chr15 40402923 40402958 -60977563 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1195 123 0 0 chr15 40403001 40403164 -60977357 - AluSp SINE Alu -12 301 139 915 235 83 13 chr15 40403183 40403413 -60977108 - MIR SINE MIR -15 247 2 930 180 53 121 chr15 40403487 40403716 -60976805 - MLT1B LTR MaLR -65 325 125 2042 117 7 3 chr15 40403716 40403998 -60976523 - AluSx SINE Alu -29 283 1 930 180 53 121 chr15 40403998 40404107 -60976414 - MLT1B LTR MaLR -265 125 10 266 288 96 14 chr15 40404479 40404625 -60975896 + MER112 DNA MER1_type 99 256 -4 1704 104 4 4 chr15 40404705 40404935 -60975586 - AluSx SINE Alu -10 300 71 2177 105 7 7 chr15 40404935 40405229 -60975292 - AluSx SINE Alu -16 296 1 527 145 40 0 chr15 40405230 40405306 -60975215 - AluSx SINE Alu -233 80 2 1713 164 58 60 chr15 40405483 40405655 -60974866 - MER7A DNA MER2_type -2693 345 174 2159 58 43 25 chr15 40405655 40405959 -60974562 + AluY SINE Alu 1 309 0 1713 164 58 60 chr15 40405959 40406132 -60974389 - MER7A DNA MER2_type -2864 174 2 433 95 48 0 chr15 40406160 40406223 -60974298 + L1MC4a LINE L1 6672 6737 -1071 1506 246 175 33 chr15 40406230 40406564 -60973957 - L1MEc LINE L1 -1908 4307 4022 2289 114 0 3 chr15 40406564 40406872 -60973649 - AluSx SINE Alu -5 307 1 1506 246 175 33 chr15 40406872 40407573 -60972948 - L1MEc LINE L1 -2193 4022 3125 659 226 122 38 chr15 40407573 40407718 -60972803 - MER58 DNA MER1_type 0 2420 2289 2678 194 61 8 chr15 40407718 40408240 -60972281 + MER44D DNA MER2_type 1 605 0 659 226 122 38 chr15 40408240 40408394 -60972127 - MER58 DNA MER1_type -131 2289 10 684 200 222 106 chr15 40408405 40408765 -60971756 - L1MEc LINE L1 -3085 3130 2813 333 104 0 75 chr15 40408765 40408813 -60971708 - MER41A LTR ERV1 -86 468 425 2622 49 0 3 chr15 40408813 40409118 -60971403 + AluY SINE Alu 1 304 -7 333 104 0 75 chr15 40409118 40409136 -60971385 - MER41A LTR ERV1 -129 425 407 684 200 222 106 chr15 40409136 40409439 -60971082 - L1MEc LINE L1 -3402 2813 2316 2100 137 0 0 chr15 40409446 40409745 -60970776 - AluSx SINE Alu -13 299 1 451 236 39 44 chr15 40409748 40409930 -60970591 - L1MEc LINE L1 -4113 2283 2103 513 213 242 42 chr15 40410051 40410291 -60970230 - L1ME1 LINE L1 -190 5976 5689 388 94 0 62 chr15 40410343 40410407 -60970114 - L1MB7 LINE L1 -9 6175 6116 699 217 160 28 chr15 40410429 40410641 -60969880 - L1MA10 LINE L1 -29 6305 6066 3475 137 75 125 chr15 40410649 40410909 -60969612 - L1MB8 LINE L1 -42 6136 5865 226 133 0 22 chr15 40410909 40410954 -60969567 + MER4E LTR ERV1 663 706 -73 3475 137 75 125 chr15 40410954 40411554 -60968967 - L1MB8 LINE L1 -313 5865 5237 1536 143 4 66 chr15 40411554 40411676 -60968845 - AluJb SINE Alu -69 243 144 1754 159 21 3 chr15 40411676 40411959 -60968562 - AluSx SINE Alu -24 288 1 1536 143 4 66 chr15 40411959 40412095 -60968426 - AluJb SINE Alu -168 144 1 3475 137 75 125 chr15 40412095 40412298 -60968223 - L1MB8 LINE L1 -941 5237 5053 2492 64 0 0 chr15 40412298 40412593 -60967928 - AluY SINE Alu -16 295 1 3475 137 75 125 chr15 40412593 40412746 -60967775 - L1MB8 LINE L1 -1125 5053 4894 473 224 133 6 chr15 40412744 40412909 -60967612 - L1ME1 LINE L1 -559 5603 5418 * 1092 191 44 0 chr15 40412914 40413118 -60967403 - AluJb SINE Alu -91 221 9 3506 230 106 50 chr15 40413119 40413191 -60967330 - Charlie1 DNA MER1_type -1102 1659 1592 1784 124 6 81 chr15 40413191 40413513 -60967008 + AluSx SINE Alu 1 298 -14 3506 230 106 50 chr15 40413513 40413572 -60966949 - Charlie1 DNA MER1_type -1169 1592 1538 2171 106 35 0 chr15 40413572 40413856 -60966665 + AluSx SINE Alu 1 294 -18 3506 230 106 50 chr15 40413856 40413979 -60966542 - Charlie1 DNA MER1_type -1223 1538 1423 194 0 39 0 chr15 40413979 40414005 -60966516 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 3506 230 106 50 chr15 40414005 40414355 -60966166 - Charlie1 DNA MER1_type -1338 1423 1094 2457 84 0 0 chr15 40414355 40414653 -60965868 + AluSx SINE Alu 1 298 -14 3506 230 106 50 chr15 40414653 40415070 -60965451 - Charlie1 DNA MER1_type -1667 1094 701 2298 65 10 7 chr15 40415070 40415364 -60965157 - AluY SINE Alu -16 295 1 3506 230 106 50 chr15 40415364 40415514 -60965007 - Charlie1 DNA MER1_type -2060 701 561 1333 196 134 0 chr15 40415514 40415820 -60964701 + MER7A DNA MER2_type 1 345 -1 3506 230 106 50 chr15 40415820 40415931 -60964590 - Charlie1 DNA MER1_type -2200 561 301 1642 189 0 17 chr15 40415940 40416236 -60964285 + AluJo SINE Alu 1 291 -21 1734 144 20 37 chr15 40416249 40416548 -60963973 + AluJo SINE Alu 1 294 -18 2365 88 0 3 chr15 40416554 40416850 -60963671 + AluSp SINE Alu 2 296 -17 2258 101 6 22 chr15 40417163 40417481 -60963040 + AluSq SINE Alu 1 313 0 227 233 33 17 chr15 40417528 40417588 -60962933 - L1M4c LINE L1 -4731 1653 1593 1744 107 96 21 chr15 40417702 40417983 -60962538 + AluSx SINE Alu 5 306 -6 180 97 0 0 chr15 40418058 40418089 -60962432 + (A)n Simple_repeat Simple_repeat 1 31 0 676 256 0 0 chr15 40418104 40418233 -60962288 + FLAM_A SINE Alu 1 129 -13 1724 166 17 7 chr15 40418398 40418687 -60961834 - AluJo SINE Alu 0 312 21 1538 176 16 0 chr15 40419595 40419851 -60960670 + AluJo SINE Alu 47 306 -6 846 143 0 0 chr15 40420052 40420171 -60960350 + FLAM_C SINE Alu 1 119 -24 2316 107 3 0 chr15 40420571 40420871 -60959650 - AluSp SINE Alu -12 301 1 21 0 0 0 chr15 40420871 40420892 -60959629 + AT_rich Low_complexity Low_complexity 1 21 0 896 139 89 13 chr15 40421158 40421316 -60959205 - AluJo SINE Alu -25 287 118 2303 100 0 13 chr15 40421977 40422288 -60958233 + AluSg SINE Alu 1 307 -3 1463 110 0 0 chr15 40422359 40422550 -60957971 + AluSq SINE Alu 106 296 -17 2020 136 0 17 chr15 40423451 40423753 -60956768 + AluSx SINE Alu 1 297 -15 1179 199 38 0 chr15 40424045 40424256 -60956265 + MER20 DNA MER1_type 1 219 0 1895 147 57 45 chr15 40424357 40424690 -60955831 - MER1B DNA MER1_type 0 337 1 2043 123 3 19 chr15 40425757 40426065 -60954456 - AluSq SINE Alu -9 304 2 1381 191 9 57 chr15 40426170 40426485 -60954036 + AluJo SINE Alu 1 300 -12 343 309 0 0 chr15 40426553 40426637 -60953884 - L2 LINE L2 -289 2983 2900 408 116 0 105 chr15 40426795 40426832 -60953689 - MER41A LTR ERV1 -87 467 442 2193 104 27 13 chr15 40426832 40427131 -60953390 + AluSg SINE Alu 1 303 -7 408 116 0 105 chr15 40427131 40427179 -60953342 - MER41A LTR ERV1 -112 442 391 269 320 262 6 chr15 40427179 40427526 -60952995 - L2 LINE L2 -577 2737 2302 2202 79 3 27 chr15 40427529 40427848 -60952673 + AluSp SINE Alu 1 312 0 256 309 0 24 chr15 40428065 40428191 -60952330 + CT-rich Low_complexity Low_complexity 4 126 0 289 355 116 47 chr15 40428207 40429060 -60951461 - L2 LINE L2 -2104 1210 299 1897 149 24 17 chr15 40429135 40429430 -60951091 - AluJb SINE Alu -15 297 1 21 36 0 0 chr15 40429463 40429491 -60951030 + AT_rich Low_complexity Low_complexity 1 28 0 1495 189 26 23 chr15 40430765 40430878 -60949643 + AluJo SINE Alu 1 112 -200 1919 131 0 24 chr15 40430878 40431168 -60949353 - AluSx SINE Alu -29 283 1 1495 189 26 23 chr15 40431168 40431360 -60949161 + AluJo SINE Alu 112 307 -5 546 151 12 0 chr15 40431454 40431540 -60948981 + Tigger5 DNA MER2_type 2237 2323 0 183 255 196 59 chr15 40432355 40432508 -60948013 + MIR SINE MIR 79 252 -10 1852 164 3 19 chr15 40432511 40432821 -60947700 + AluJb SINE Alu 1 305 -7 1251 166 100 30 chr15 40433337 40433608 -60946913 + AluJo SINE Alu 4 293 -19 2082 119 0 19 chr15 40433627 40433939 -60946582 + AluSx SINE Alu 1 306 -6 2198 114 7 0 chr15 40433970 40434269 -60946252 - AluSp SINE Alu -12 301 1 1750 110 118 0 chr15 40434300 40434563 -60945958 + AluSg1 SINE Alu 1 294 -15 2006 138 7 3 chr15 40434653 40434951 -60945570 + AluSx SINE Alu 3 301 -11 189 200 25 0 chr15 40434970 40435010 -60945511 - L2 LINE L2 -10 3262 3222 1296 180 153 0 chr15 40435588 40435849 -60944672 + AluJb SINE Alu 1 301 -11 2393 67 0 17 chr15 40436369 40436669 -60943852 - AluY SINE Alu -16 295 1 1838 177 0 7 chr15 40436712 40437006 -60943515 + AluSx SINE Alu 1 292 -20 1504 161 77 18 chr15 40437323 40437608 -60942913 + AluJo SINE Alu 1 302 -10 1781 114 4 0 chr15 40437616 40437852 -60942669 + AluSq SINE Alu 1 237 -76 608 188 61 117 chr15 40438068 40438127 -60942394 - MER5A DNA MER1_type -3 186 125 2198 93 41 0 chr15 40438127 40438418 -60942103 + AluSq SINE Alu 2 304 -9 608 188 61 117 chr15 40438418 40438555 -60941966 - MER5A DNA MER1_type -64 125 1 331 177 32 0 chr15 40441149 40441211 -60939310 - L1MB5 LINE L1 -8 6166 6103 23 54 0 0 chr15 40441415 40441452 -60939069 + AT_rich Low_complexity Low_complexity 1 37 0 1045 221 77 0 chr15 40441460 40441668 -60938853 - MER58A DNA MER1_type 0 224 1 2143 117 0 7 chr15 40443066 40443374 -60937147 + AluSx SINE Alu 3 308 -4 1148 140 34 10 chr15 40443590 40443797 -60936724 + AluJo SINE Alu 1 212 -100 1589 176 47 3 chr15 40444148 40444444 -60936077 + AluJo SINE Alu 1 309 -3 2218 112 3 10 chr15 40444450 40444764 -60935757 + AluSx SINE Alu 1 312 0 2195 122 0 22 chr15 40445024 40445335 -60935186 - AluSx SINE Alu -8 304 1 1821 164 16 10 chr15 40445425 40445735 -60934786 - AluJb SINE Alu 0 312 1 2447 58 0 3 chr15 40445796 40446087 -60934434 - AluY SINE Alu -21 290 1 2183 110 3 19 chr15 40446087 40446404 -60934117 - AluSx SINE Alu 0 312 1 773 213 6 30 chr15 40446853 40447022 -60933499 - MIR SINE MIR 0 262 98 2011 134 0 41 chr15 40447096 40447416 -60933105 - AluJb SINE Alu -5 307 1 2117 102 14 7 chr15 40447662 40447956 -60932565 + AluSg1 SINE Alu 2 297 -12 2116 117 0 22 chr15 40448210 40448527 -60931994 - AluSx SINE Alu -2 310 1 186 40 0 0 chr15 40448676 40448685 -60931836 + (TA)n Simple_repeat Simple_repeat 2 10 -16 1786 136 79 0 chr15 40448685 40448950 -60931571 + AluSx SINE Alu 1 286 -26 186 40 0 0 chr15 40448950 40448965 -60931556 + (TA)n Simple_repeat Simple_repeat 9 26 0 2097 106 3 40 chr15 40449014 40449317 -60931204 - AluSx SINE Alu -19 293 2 21 36 0 0 chr15 40449425 40449453 -60931068 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr15 40449512 40449551 -60930970 + AT_rich Low_complexity Low_complexity 1 39 0 679 118 41 178 chr15 40450546 40450611 -60929910 + MER46A DNA MER2_type 1 73 -163 1924 153 10 0 chr15 40450611 40450918 -60929603 + AluSx SINE Alu 3 312 0 1593 174 26 46 chr15 40450928 40451233 -60929288 + AluJb SINE Alu 1 299 -13 679 118 41 178 chr15 40451233 40451325 -60929196 + MER46A DNA MER2_type 83 146 -90 1888 112 76 0 chr15 40451831 40452107 -60928414 + AluSx SINE Alu 1 297 -15 2237 96 0 3 chr15 40452204 40452495 -60928026 + AluSq SINE Alu 1 290 -23 2321 82 0 7 chr15 40454610 40454904 -60925617 + AluSp SINE Alu 1 292 -21 1969 132 57 3 chr15 40454932 40455290 -60925231 - AluSx SINE Alu 0 374 1 210 164 134 30 chr15 40455656 40455723 -60924798 - L2 LINE L2 -61 3252 3179 197 33 33 0 chr15 40455853 40455883 -60924638 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 2153 92 0 0 chr15 40455887 40456160 -60924361 - AluSg SINE Alu -37 273 1 1935 90 115 11 chr15 40456251 40456530 -60923991 + AluSg SINE Alu 1 308 -2 521 205 8 25 chr15 40457706 40457828 -60922693 + MIR SINE MIR 23 142 -66 24 32 0 0 chr15 40458155 40458186 -60922335 + AT_rich Low_complexity Low_complexity 1 31 0 2368 77 6 16 chr15 40458780 40459093 -60921428 - AluSp SINE Alu 0 313 4 2070 119 10 10 chr15 40459163 40459473 -60921048 - AluSx SINE Alu -2 310 1 626 191 0 19 chr15 40460565 40460670 -60919851 + FLAM_A SINE Alu 18 120 -22 2832 7 0 3 chr15 40460680 40460988 -60919533 + AluY SINE Alu 1 307 -4 180 0 0 0 chr15 40460989 40461009 -60919512 + (ATG)n Simple_repeat Simple_repeat 2 21 0 1785 188 0 0 chr15 40461070 40461358 -60919163 - AluJb SINE Alu -24 288 1 2361 104 0 0 chr15 40461495 40461804 -60918717 + AluSx SINE Alu 1 309 -3 2164 124 0 0 chr15 40462021 40462320 -60918201 - AluSx SINE Alu -12 300 2 1401 181 32 8 chr15 40462321 40462413 -60918108 + AluJo SINE Alu 25 113 -199 522 0 0 0 chr15 40462413 40462471 -60918050 + (CATA)n Simple_repeat Simple_repeat 3 60 0 1401 181 32 8 chr15 40462471 40462626 -60917895 + AluJo SINE Alu 113 278 -34 210 71 0 0 chr15 40462626 40462654 -60917867 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 1834 126 0 15 chr15 40462678 40462948 -60917573 + AluSx SINE Alu 39 304 -8 21 0 0 0 chr15 40465037 40465058 -60915463 + AT_rich Low_complexity Low_complexity 1 21 0 422 254 69 40 chr15 40467243 40467364 -60913157 - MER5B DNA MER1_type 0 178 49 248 70 23 0 chr15 40467364 40467407 -60913114 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 422 254 69 40 chr15 40467407 40467458 -60913063 - MER5B DNA MER1_type -129 49 1 22 80 0 0 chr15 40467721 40467771 -60912750 + AT_rich Low_complexity Low_complexity 1 50 0 273 221 183 29 chr15 40467943 40468047 -60912474 + MIR SINE MIR 72 191 -71 201 250 0 0 chr15 40468494 40468530 -60911991 - MIR SINE MIR -138 70 35 187 315 41 55 chr15 40468911 40468984 -60911537 + MIR SINE MIR 8 79 -183 2051 118 20 3 chr15 40469270 40469566 -60910955 + AluSx SINE Alu 1 301 -11 237 300 20 40 chr15 40469566 40469666 -60910855 - L2 LINE L2 -32 3281 3184 25 90 0 0 chr15 40470127 40470194 -60910327 + AT_rich Low_complexity Low_complexity 1 67 0 2013 122 0 14 chr15 40470194 40470482 -60910039 - AluSx SINE Alu -28 284 1 2354 57 43 7 chr15 40470693 40470993 -60909528 + AluY SINE Alu 1 311 0 1862 130 39 3 chr15 40470999 40471283 -60909238 + AluSq SINE Alu 1 294 -19 987 114 0 0 chr15 40471347 40471479 -60909042 - AluSx SINE Alu -15 295 164 538 152 0 0 chr15 40471481 40471560 -60908961 - AluSx SINE Alu -233 80 2 1791 159 21 0 chr15 40471571 40471854 -60908667 - AluJb SINE Alu -23 289 1 194 125 31 0 chr15 40471904 40471936 -60908585 + MIR SINE MIR 116 148 -114 2106 109 3 10 chr15 40471993 40472296 -60908225 - AluSx SINE Alu -10 302 2 2119 111 47 0 chr15 40472486 40472784 -60907737 - AluSx SINE Alu 0 312 1 2072 102 17 10 chr15 40472784 40473079 -60907442 - AluSq SINE Alu -15 298 2 1778 140 43 0 chr15 40473080 40473358 -60907163 - AluSx SINE Alu -9 303 14 2203 135 81 33 chr15 40473485 40473878 -60906643 - MLT2D LTR ERVL 0 414 3 244 320 147 0 chr15 40473996 40474071 -60906450 - L2 LINE L2 -36 3236 3151 1409 130 119 47 chr15 40474111 40474388 -60906133 - AluJo SINE Alu -15 297 1 2257 79 10 10 chr15 40474579 40474884 -60905637 - AluSx SINE Alu -7 305 1 181 185 31 15 chr15 40475938 40476003 -60904518 + C-rich Low_complexity Low_complexity 6 71 0 207 0 0 0 chr15 40476220 40476243 -60904278 + (CGG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr15 40476283 40476306 -60904215 + GC_rich Low_complexity Low_complexity 1 23 0 2392 93 3 0 chr15 40478047 40478349 -60902172 - AluSq SINE Alu -10 303 1 2339 63 25 0 chr15 40478438 40478723 -60901798 - AluY SINE Alu -19 292 1 210 71 0 0 chr15 40478746 40478774 -60901747 + (T)n Simple_repeat Simple_repeat 1 28 0 1635 157 24 41 chr15 40478803 40478959 -60901562 - AluJb SINE Alu -24 288 131 2506 73 0 0 chr15 40478959 40479259 -60901262 - AluSg1 SINE Alu -8 301 2 297 0 0 0 chr15 40479259 40479292 -60901229 + (TA)n Simple_repeat Simple_repeat 2 34 0 1635 157 24 41 chr15 40479292 40479427 -60901094 - AluJb SINE Alu -179 133 1 1020 166 109 116 chr15 40479462 40479764 -60900757 - AluSq SINE Alu -3 300 1 504 130 0 0 chr15 40480461 40480530 -60899991 + FLAM_A SINE Alu 42 110 -32 280 240 40 10 chr15 40480819 40480919 -60899602 - L1MC5 LINE L1 -118 7843 7741 2454 71 7 0 chr15 40482441 40482735 -60897786 - AluSc SINE Alu -13 296 1 276 130 0 0 chr15 40483092 40483138 -60897383 + (T)n Simple_repeat Simple_repeat 1 46 0 2207 85 7 4 chr15 40483239 40483520 -60897001 + AluSp SINE Alu 22 303 -10 2259 94 0 0 chr15 40483536 40483812 -60896709 + AluSc SINE Alu 18 293 -16 23 54 0 0 chr15 40483992 40484029 -60896492 + AT_rich Low_complexity Low_complexity 1 37 0 1229 131 131 0 chr15 40484376 40484612 -60895909 - L1MA6 LINE L1 -5 6295 6029 331 230 23 0 chr15 40484684 40484771 -60895750 + MIR SINE MIR 112 200 -62 1885 123 18 7 chr15 40485612 40485897 -60894624 - AluSx SINE Alu -2 310 23 2289 82 4 0 chr15 40485946 40486225 -60894296 - AluSp SINE Alu -20 293 14 2319 91 7 13 chr15 40486233 40486542 -60893979 - AluSg SINE Alu -3 307 1 480 251 79 89 chr15 40486780 40486935 -60893586 + L1M4 LINE L1 4615 4770 -1376 2206 105 24 0 chr15 40486935 40487231 -60893290 + AluSq SINE Alu 1 303 -10 480 251 79 89 chr15 40487231 40487340 -60893181 + L1M4 LINE L1 4770 4879 -1267 1313 191 146 17 chr15 40487340 40487690 -60892831 - MSTD LTR MaLR 0 396 2 480 251 79 89 chr15 40487690 40487907 -60892614 + L1M4 LINE L1 4879 5092 -1054 2069 117 11 0 chr15 40487907 40488226 -60892295 + AluSp SINE Alu 1 322 0 2322 99 10 0 chr15 40488283 40488585 -60891936 + AluSg SINE Alu 1 305 -5 1294 106 62 0 chr15 40488585 40488764 -60891757 + AluSp SINE Alu 109 298 -15 500 244 132 43 chr15 40488811 40489069 -60891452 + L1M4 LINE L1 4040 4320 -1826 992 160 14 80 chr15 40489081 40489294 -60891227 - AluJo SINE Alu -12 300 102 532 309 32 28 chr15 40489301 40489635 -60890886 + L1M4 LINE L1 4330 4665 -1481 267 265 0 0 chr15 40490239 40490307 -60890214 + A-rich Low_complexity Low_complexity 5 72 0 2170 99 26 3 chr15 40490614 40490916 -60889605 - AluSc SINE Alu 0 309 1 2073 147 10 0 chr15 40491041 40491340 -60889181 - AluSx SINE Alu -10 302 1 2079 131 16 3 chr15 40491349 40491655 -60888866 - AluSx SINE Alu -2 310 1 2026 157 0 0 chr15 40491705 40492005 -60888516 + AluJo SINE Alu 7 306 -6 2462 63 3 3 chr15 40492006 40492306 -60888215 + AluY SINE Alu 1 300 -11 679 238 76 24 chr15 40492463 40492732 -60887789 - L1ME LINE L1 -344 5777 5501 208 175 132 114 chr15 40492767 40492881 -60887640 + MIR SINE MIR 39 154 -108 2226 134 0 0 chr15 40492890 40493196 -60887325 + AluSx SINE Alu 1 306 -6 1746 137 13 37 chr15 40494661 40494961 -60885560 - AluJb SINE Alu -19 293 1 1662 163 0 64 chr15 40495144 40495304 -60885217 - AluJo SINE Alu -19 293 161 2144 116 0 16 chr15 40495304 40495607 -60884914 - AluSx SINE Alu -14 298 1 1662 163 0 64 chr15 40495607 40495759 -60884762 - AluJo SINE Alu -151 161 1 1084 182 126 70 chr15 40495764 40496176 -60884345 - Charlie4a DNA MER1_type -73 435 1 481 160 160 0 chr15 40497018 40497118 -60883403 - AluSc SINE Alu -8 301 186 896 94 0 8 chr15 40497122 40497334 -60883187 + AluY SINE Alu 6 291 -20 1590 80 5 5 chr15 40497334 40497535 -60882986 - AluSq SINE Alu -112 201 1 2146 113 3 42 chr15 40497912 40498222 -60882299 + AluSx SINE Alu 1 298 -14 2466 61 10 0 chr15 40498224 40498517 -60882004 + AluY SINE Alu 1 296 -15 859 141 0 0 chr15 40498718 40498846 -60881675 - FLAM_C SINE Alu -5 128 1 317 343 119 0 chr15 40499324 40499467 -60881054 + MIR SINE MIR 33 192 -70 1792 164 10 0 chr15 40502134 40502433 -60878088 - AluSx SINE Alu -10 302 1 563 200 173 27 chr15 40502433 40502583 -60877938 - FAM SINE Alu 0 175 4 2153 114 7 3 chr15 40502789 40503088 -60877433 - AluSx SINE Alu -12 300 1 680 161 16 32 chr15 40503707 40503831 -60876690 - FLAM_A SINE Alu -11 122 1 1913 166 70 0 chr15 40504076 40504389 -60876132 - MER1B DNA MER1_type 0 339 5 1956 135 3 17 chr15 40505502 40505798 -60874723 - AluSx SINE Alu -20 292 1 2319 91 3 3 chr15 40505865 40506163 -60874358 + AluSg SINE Alu 1 298 -12 614 238 220 40 chr15 40506540 40506952 -60873569 + L1ME4a LINE L1 5506 5999 -122 276 188 43 0 chr15 40506985 40507054 -60873467 + L1ME4a LINE L1 6048 6119 -2 2328 85 30 3 chr15 40507685 40507990 -60872531 + AluSp SINE Alu 1 313 0 2280 92 31 0 chr15 40508511 40508803 -60871718 - AluSx SINE Alu -11 301 1 246 235 103 0 chr15 40510175 40510243 -60870278 + L2 LINE L2 3189 3263 -9 2505 78 0 0 chr15 40510283 40510592 -60869929 - AluY SINE Alu -2 309 1 1560 183 14 21 chr15 40510597 40510886 -60869635 - AluJo SINE Alu -21 291 5 329 218 120 30 chr15 40510912 40511045 -60869476 + L1ME4a LINE L1 5789 5933 -188 232 246 35 0 chr15 40511104 40511161 -60869360 + MIR SINE MIR 26 84 -178 2429 78 3 0 chr15 40511773 40512080 -60868441 - AluY SINE Alu -3 308 1 2081 132 0 0 chr15 40512818 40513099 -60867422 - AluSp SINE Alu -32 281 1 2127 138 0 0 chr15 40514289 40514586 -60865935 - AluSx SINE Alu -11 301 5 2582 72 3 0 chr15 40514656 40514963 -60865558 + AluSp SINE Alu 1 308 -5 318 263 56 26 chr15 40515030 40515162 -60865359 + L1MC/D LINE L1 5693 5830 -331 2493 70 0 3 chr15 40515162 40515463 -60865058 + AluY SINE Alu 1 300 -11 2190 116 0 3 chr15 40515629 40515923 -60864598 - AluSx SINE Alu -19 293 1 28 0 0 0 chr15 40515980 40516008 -60864513 + AT_rich Low_complexity Low_complexity 1 28 0 2030 164 0 0 chr15 40516016 40516326 -60864195 + AluJb SINE Alu 1 310 -2 180 0 0 0 chr15 40516340 40516360 -60864161 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 257 221 79 64 chr15 40516402 40516542 -60863979 + L1ME LINE L1 328 469 -5927 2461 52 10 32 chr15 40516816 40517126 -60863395 - AluY SINE Alu -8 303 1 2317 204 103 80 chr15 40517471 40517669 -60862852 + L1ME LINE L1 775 967 -5439 2358 106 0 6 chr15 40517669 40517981 -60862540 + AluSx SINE Alu 1 310 -2 2317 204 103 80 chr15 40517981 40518038 -60862483 + L1ME LINE L1 967 1021 -5385 2224 96 22 29 chr15 40518038 40518351 -60862170 + AluSx SINE Alu 1 311 -1 2317 204 103 80 chr15 40518351 40518567 -60861954 + L1ME LINE L1 1021 1231 -5175 3013 148 40 84 chr15 40518567 40519197 -60861324 + MER7C DNA MER2_type 1 602 0 2317 204 103 80 chr15 40519197 40519292 -60861229 + L1ME LINE L1 1231 1322 -5084 2249 90 0 45 chr15 40519292 40519604 -60860917 + AluSc SINE Alu 1 298 -11 2317 204 103 80 chr15 40519604 40520002 -60860519 + L1ME LINE L1 1322 1739 -4667 2117 140 0 0 chr15 40520002 40520302 -60860219 - AluJb SINE Alu -12 300 1 2317 204 103 80 chr15 40520302 40520388 -60860133 + L1ME LINE L1 1739 1822 -4584 444 54 0 0 chr15 40520408 40520464 -60860057 + Alu SINE Alu 2 57 -261 663 246 80 26 chr15 40520468 40520781 -60859740 + L1ME LINE L1 1995 2324 -4082 3508 222 32 31 chr15 40520784 40521061 -60859460 + L1ME LINE L1 3663 3938 -2468 2091 137 0 0 chr15 40521061 40521354 -60859167 + AluSx SINE Alu 1 293 -19 3508 222 32 31 chr15 40521354 40521992 -60858529 + L1ME LINE L1 3938 4582 -1824 2034 95 75 14 chr15 40521992 40522287 -60858234 + AluSq SINE Alu 1 313 0 3508 222 32 31 chr15 40522287 40522337 -60858184 + L1ME LINE L1 4582 4630 -1776 1932 134 7 3 chr15 40523441 40523725 -60856796 - AluJo SINE Alu -27 285 1 2315 67 9 51 chr15 40524104 40524420 -60856101 + AluY SINE Alu 1 303 -8 1538 134 9 0 chr15 40524780 40525003 -60855518 - AluSg/x SINE Alu -9 301 77 2276 95 14 7 chr15 40525160 40525456 -60855065 + AluSx SINE Alu 1 298 -14 755 153 0 29 chr15 40525847 40525984 -60854537 + FLAM_C SINE Alu 1 133 0 1876 157 10 22 chr15 40526204 40526517 -60854004 + AluSx SINE Alu 1 309 -3 22 56 0 0 chr15 40526576 40526612 -60853909 + AT_rich Low_complexity Low_complexity 1 36 0 2074 194 55 18 chr15 40527320 40527773 -60852748 + LTR22B LTR ERVK 23 492 0 2310 101 0 10 chr15 40528596 40528903 -60851618 - AluSg SINE Alu -6 304 1 645 158 16 16 chr15 40529229 40529356 -60851165 - FLAM_C SINE Alu 0 143 17 1329 156 120 36 chr15 40530487 40530627 -60849894 + AluJo SINE Alu 1 128 -184 2303 101 0 10 chr15 40530627 40530933 -60849588 + AluSx SINE Alu 4 306 -6 1329 156 120 36 chr15 40530933 40531068 -60849453 + AluJo SINE Alu 128 299 -13 1939 141 0 3 chr15 40531333 40531637 -60848884 + AluSx SINE Alu 1 303 0 1004 168 43 0 chr15 40531638 40531799 -60848722 + AluJb SINE Alu 133 300 -12 1730 158 34 14 chr15 40531992 40532284 -60848237 - AluJb SINE Alu -12 300 3 266 228 0 175 chr15 40532450 40532551 -60847970 + MIR SINE MIR 70 131 -131 1942 133 0 51 chr15 40532551 40532866 -60847655 - AluSx SINE Alu -13 299 1 266 228 0 175 chr15 40532866 40532935 -60847586 + MIR SINE MIR 131 210 -52 2468 70 0 6 chr15 40532940 40533252 -60847269 + AluSg SINE Alu 1 310 0 1372 190 6 80 chr15 40533260 40533586 -60846935 + AluJb SINE Alu 1 302 -10 2370 93 7 0 chr15 40533611 40533913 -60846608 - AluSx SINE Alu -8 304 1 270 0 0 0 chr15 40535457 40535487 -60845034 + (A)n Simple_repeat Simple_repeat 1 30 0 2376 92 7 0 chr15 40535904 40536208 -60844313 - AluSp SINE Alu -7 306 1 182 258 0 0 chr15 40536906 40536937 -60843584 - L2 LINE L2 -18 3254 3224 2262 114 0 3 chr15 40538087 40538394 -60842127 - AluSg SINE Alu -4 306 1 1194 74 27 0 chr15 40538658 40538806 -60841715 - L1PA8 LINE L1 -15 6157 6006 21 0 0 0 chr15 40538850 40538871 -60841650 + AT_rich Low_complexity Low_complexity 1 21 0 285 253 137 14 chr15 40538886 40539032 -60841489 - L1ME4a LINE L1 -2 6119 5956 869 199 50 0 chr15 40539077 40539238 -60841283 - FRAM SINE Alu -6 170 2 2276 101 7 0 chr15 40539668 40539965 -60840556 + AluSp SINE Alu 1 299 -14 257 216 20 0 chr15 40539971 40540022 -60840499 + MIR SINE MIR 56 107 -155 1873 160 0 0 chr15 40540057 40540344 -60840177 - AluJb SINE Alu -12 300 14 2009 145 0 23 chr15 40540351 40540661 -60839860 - AluSx SINE Alu -9 303 1 3861 136 20 9 chr15 40540687 40541272 -60839249 - L1 LINE L1 -1665 4481 3887 2298 98 0 13 chr15 40541272 40541578 -60838943 - AluY SINE Alu -9 302 1 3861 136 20 9 chr15 40541578 40541645 -60838876 - L1 LINE L1 -2259 3887 3822 1614 139 27 131 chr15 40541851 40542188 -60838333 - AluJo SINE Alu 0 302 1 1463 170 71 54 chr15 40542437 40542773 -60837748 + MER2 DNA MER2_type 2 343 -1 2434 76 10 19 chr15 40543443 40543757 -60836764 + AluY SINE Alu 1 311 0 256 293 17 0 chr15 40544039 40544097 -60836424 - L2 LINE L2 -7 3265 3207 354 316 128 37 chr15 40544365 40544552 -60835969 - MIR SINE MIR -57 205 2 1956 123 47 0 chr15 40546089 40546365 -60834156 - AluSx SINE Alu -23 289 1 226 265 0 0 chr15 40546469 40546518 -60834003 + Charlie4 DNA MER1_type 2 50 -1911 1449 261 97 21 chr15 40546731 40547207 -60833314 + LTR33A LTR ERVL 4 515 -8 384 292 56 50 chr15 40547508 40547669 -60832852 + MIR3 SINE MIR 9 170 -38 30 27 0 0 chr15 40547706 40547743 -60832778 + AT_rich Low_complexity Low_complexity 1 37 0 2182 61 27 24 chr15 40547932 40548225 -60832296 - AluY SINE Alu -17 294 1 1794 138 10 61 chr15 40548532 40548692 -60831829 - AluJb SINE Alu -16 296 158 2381 104 0 0 chr15 40548692 40548999 -60831522 - AluSx SINE Alu -5 307 1 1794 138 10 61 chr15 40548999 40549150 -60831371 - AluJb SINE Alu -154 158 1 2173 102 17 0 chr15 40549180 40549474 -60831047 - AluSx SINE Alu -13 299 1 225 0 0 0 chr15 40549888 40549913 -60830608 + (A)n Simple_repeat Simple_repeat 1 25 0 918 285 85 38 chr15 40550081 40550606 -60829915 + L1ME4a LINE L1 5270 5828 -293 2238 84 17 13 chr15 40550606 40550905 -60829616 - AluY SINE Alu -11 300 1 918 285 85 38 chr15 40550905 40550979 -60829542 + L1ME4a LINE L1 5828 5897 -224 330 238 25 12 chr15 40550986 40551066 -60829455 + L2 LINE L2 3232 3312 -1 302 163 0 0 chr15 40551107 40551156 -60829365 + L1ME4a LINE L1 5973 6021 -100 30 0 0 0 chr15 40551199 40551229 -60829292 + AT_rich Low_complexity Low_complexity 1 30 0 1561 156 80 8 chr15 40551229 40551492 -60829029 - AluJo SINE Alu -30 282 1 1020 181 12 0 chr15 40552693 40552859 -60827662 + FRAM SINE Alu 1 167 -9 1742 170 14 7 chr15 40553032 40553320 -60827201 - AluJb SINE Alu -22 290 1 768 211 51 11 chr15 40553417 40553592 -60826929 + MIR SINE MIR 62 243 -19 1841 148 35 0 chr15 40555004 40555294 -60825227 - AluJo SINE Alu -12 300 1 601 243 70 5 chr15 40555350 40555535 -60824986 - L1ME3A LINE L1 -222 5948 5752 470 248 15 15 chr15 40555530 40555663 -60824858 + L1M4 LINE L1 3922 4054 -2092 * 349 222 0 0 chr15 40555700 40555781 -60824740 - L1ME3A LINE L1 -2358 5427 5347 460 280 64 6 chr15 40555786 40555943 -60824578 + LTR33 LTR ERVL 1 166 -355 900 270 81 73 chr15 40556090 40556469 -60824052 - L1ME3A LINE L1 -1070 5076 4690 2205 123 0 0 chr15 40556469 40556771 -60823750 - AluSx SINE Alu -9 303 2 900 270 81 73 chr15 40556771 40556899 -60823622 - L1ME3A LINE L1 -1456 4690 4565 615 225 39 93 chr15 40556896 40557023 -60823498 - L1ME3A LINE L1 -2042 4104 3972 * 2336 65 3 32 chr15 40557023 40557332 -60823189 + AluY SINE Alu 1 300 -11 2280 81 7 10 chr15 40557332 40557628 -60822893 + AluY SINE Alu 1 295 -16 615 225 39 93 chr15 40557628 40557757 -60822764 - L1ME3A LINE L1 -2172 3974 3861 239 277 0 0 chr15 40557951 40558016 -60822505 + MIR SINE MIR 90 154 -108 433 213 0 0 chr15 40558136 40558216 -60822305 + MER116 DNA Mariner 1 80 0 2211 102 24 0 chr15 40558518 40558812 -60821709 - AluSx SINE Alu -11 301 1 22 0 0 0 chr15 40559218 40559240 -60821281 + AT_rich Low_complexity Low_complexity 1 22 0 1528 161 26 59 chr15 40559343 40559499 -60821022 - AluJo SINE Alu -17 295 152 2269 87 28 0 chr15 40559499 40559787 -60820734 - AluSx SINE Alu -16 296 1 1528 161 26 59 chr15 40559787 40559935 -60820586 - AluJo SINE Alu -160 152 1 25 0 0 0 chr15 40560119 40560144 -60820377 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr15 40560743 40560769 -60819752 + AT_rich Low_complexity Low_complexity 1 26 0 2013 132 10 3 chr15 40561749 40562045 -60818476 - AluJb SINE Alu -14 298 1 1902 138 10 22 chr15 40562546 40562857 -60817664 - AluSx SINE Alu -5 307 1 3173 143 28 52 chr15 40562897 40563002 -60817519 + L1MA9 LINE L1 5726 5832 -480 991 143 0 0 chr15 40563002 40563135 -60817386 + FLAM_C SINE Alu 1 133 0 3173 143 28 52 chr15 40563135 40563629 -60816892 + L1MA9 LINE L1 5832 6311 -1 2251 100 7 3 chr15 40563649 40563949 -60816572 + AluSp SINE Alu 1 301 -12 1385 151 82 68 chr15 40563980 40564113 -60816408 - AluJo SINE Alu -16 296 166 2367 103 108 79 chr15 40564113 40564488 -60816033 + MSTA LTR MaLR 1 391 -37 2175 97 0 3 chr15 40564488 40564776 -60815745 - AluSx SINE Alu -25 287 1 2367 103 108 79 chr15 40564776 40564816 -60815705 + MSTA LTR MaLR 391 428 0 1385 151 82 68 chr15 40564816 40564974 -60815547 - AluJo SINE Alu -146 166 1 425 362 64 34 chr15 40565627 40566054 -60814467 - L2 LINE L2 -226 3046 2601 2255 89 3 7 chr15 40566390 40566683 -60813838 - AluSg SINE Alu -16 294 3 586 279 28 11 chr15 40568406 40568585 -60811936 - MIR SINE MIR -14 248 67 2166 83 4 11 chr15 40568585 40568861 -60811660 + AluSq SINE Alu 1 274 -39 236 246 0 82 chr15 40568869 40568930 -60811591 - MIR SINE MIR -184 78 23 2077 134 3 0 chr15 40569376 40569674 -60810847 - AluSg SINE Alu -11 299 1 559 258 81 58 chr15 40569821 40570181 -60810340 + L1ME4a LINE L1 5542 5909 -212 2106 175 44 76 chr15 40570183 40570458 -60810063 - LTR54 LTR ERV1 0 510 228 910 113 0 70 chr15 40570458 40570600 -60809921 - FLAM_C SINE Alu 0 133 2 2120 151 0 0 chr15 40570600 40570905 -60809616 - AluJb SINE Alu -7 305 1 2106 175 44 76 chr15 40570905 40571155 -60809366 - LTR54 LTR ERV1 -280 230 1 1585 168 39 7 chr15 40571314 40571599 -60808922 - AluJo SINE Alu -14 298 5 1787 125 80 7 chr15 40571862 40572151 -60808370 + AluJo SINE Alu 3 312 0 280 320 116 14 chr15 40572555 40572627 -60807894 + MIR3 SINE MIR 41 104 -104 2217 136 0 0 chr15 40572627 40572935 -60807586 - AluSq SINE Alu -5 308 1 280 320 116 14 chr15 40572935 40573009 -60807512 + MIR3 SINE MIR 104 202 -6 1456 183 11 42 chr15 40573096 40573380 -60807141 - AluSx SINE Alu -37 275 1 1794 146 36 11 chr15 40573395 40573676 -60806845 - AluSx SINE Alu -24 288 1 30 45 0 0 chr15 40573682 40573726 -60806795 + AT_rich Low_complexity Low_complexity 1 44 0 2067 139 10 0 chr15 40573733 40574035 -60806486 + AluSx SINE Alu 1 305 -7 348 143 0 0 chr15 40574037 40574086 -60806435 + MER58 DNA MER1_type 2353 2401 -19 1781 113 33 97 chr15 40574093 40574422 -60806099 + AluJo SINE Alu 5 312 0 2134 150 0 0 chr15 40574431 40574737 -60805784 + AluSx SINE Alu 1 306 -6 760 259 30 0 chr15 40574759 40574925 -60805596 - MER5A DNA MER1_type -18 171 1 382 226 36 93 chr15 40575138 40575259 -60805262 + L1MC4 LINE L1 7804 7930 -112 1778 68 0 5 chr15 40575259 40575478 -60805043 + AluY SINE Alu 84 301 -10 1903 119 22 0 chr15 40575483 40575752 -60804769 + AluSx SINE Alu 38 312 0 382 226 36 93 chr15 40575752 40575872 -60804649 + L1MC4 LINE L1 7934 8037 -5 446 193 105 4 chr15 40575877 40576013 -60804508 + L1MEc LINE L1 1007 1129 -5076 1804 157 20 7 chr15 40576105 40576404 -60804117 - AluSx SINE Alu -7 305 3 552 182 10 10 chr15 40576459 40576558 -60803963 + Tigger3b DNA MER2_type 2 100 -1131 1476 132 128 4 chr15 40576559 40576825 -60803696 + Tigger3b DNA MER2_type 275 573 -658 1967 123 10 14 chr15 40576976 40577289 -60803232 + AluSx SINE Alu 1 312 0 293 235 29 0 chr15 40577420 40577488 -60803033 + L1ME3A LINE L1 6011 6080 -90 1999 141 7 0 chr15 40577510 40577801 -60802720 + AluSx SINE Alu 1 293 -19 963 249 142 75 chr15 40577882 40578049 -60802472 + L1M4 LINE L1 3839 3993 -2153 375 73 0 0 chr15 40578049 40578104 -60802417 + (CA)n Simple_repeat Simple_repeat 2 56 0 963 249 142 75 chr15 40578104 40578218 -60802303 + L1M4 LINE L1 3993 4098 -2048 1586 197 7 0 chr15 40578218 40578508 -60802013 + AluJb SINE Alu 1 292 -20 963 249 142 75 chr15 40578508 40578725 -60801796 + L1M4 LINE L1 4098 4299 -1847 2248 113 0 0 chr15 40578725 40579026 -60801495 + AluY SINE Alu 1 301 -10 963 249 142 75 chr15 40579026 40579504 -60801017 + L1M4 LINE L1 4299 4883 -1263 2075 143 3 0 chr15 40579526 40579827 -60800694 - AluSx SINE Alu -10 302 1 1553 190 10 3 chr15 40580397 40580687 -60799834 - AluJb SINE Alu -15 297 6 49 0 0 0 chr15 40581067 40581116 -60799405 + AT_rich Low_complexity Low_complexity 1 49 0 49 0 0 0 chr15 40582049 40582098 -60798423 + AT_rich Low_complexity Low_complexity 1 49 0 499 168 21 0 chr15 40582478 40582573 -60797948 + AluJ/FLAM SINE Alu 6 102 -210 1622 179 10 3 chr15 40582799 40583089 -60797432 - AluSp SINE Alu -21 292 1 7547 59 14 3 chr15 40583123 40584570 -60795951 - L1PA7 LINE L1 0 6154 4694 207 0 0 0 chr15 40584570 40584593 -60795928 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7547 59 14 3 chr15 40584593 40584699 -60795822 - L1PA7 LINE L1 -1460 4694 4591 1379 97 0 5 chr15 40584950 40585136 -60795385 - AluY SINE Alu -99 212 28 5182 92 21 7 chr15 40585142 40585894 -60794627 - L1PA7 LINE L1 -1562 4584 3822 216 370 0 28 chr15 40586578 40586686 -60793835 + MIR SINE MIR 30 134 -74 903 149 0 22 chr15 40586945 40587079 -60793442 - FLAM_A SINE Alu -2 131 1 258 160 0 0 chr15 40587356 40587406 -60793115 + GA-rich Low_complexity Low_complexity 2 51 0 1600 154 58 79 chr15 40587926 40588111 -60792410 + MER44D DNA MER2_type 17 204 -2287 1663 140 45 48 chr15 40588111 40588403 -60792118 + AluJo SINE Alu 1 291 -21 1600 154 58 79 chr15 40588403 40588547 -60791974 + MER44D DNA MER2_type 204 609 0 279 287 30 0 chr15 40588999 40589100 -60791421 + L1P LINE L1 4878 4981 -1165 208 327 89 71 chr15 40589837 40589920 -60790601 - MIR3 SINE MIR -23 185 105 2168 104 7 7 chr15 40589920 40590218 -60790303 + AluSx SINE Alu 1 298 -14 208 327 89 71 chr15 40590218 40590302 -60790219 - MIR3 SINE MIR -103 105 15 2238 115 3 0 chr15 40591468 40591772 -60788749 - AluSx SINE Alu -7 305 1 1822 131 32 3 chr15 40592490 40592773 -60787748 + AluJb SINE Alu 3 293 -19 491 196 81 40 chr15 40594744 40594892 -60785629 - MER5A DNA MER1_type 0 189 36 276 198 140 89 chr15 40594907 40595021 -60785500 - Charlie7 DNA MER1_type -4 2608 2482 2215 114 7 0 chr15 40595021 40595319 -60785202 - AluSx SINE Alu -12 300 1 276 198 140 89 chr15 40595319 40595361 -60785160 - Charlie7 DNA MER1_type -130 2482 2444 184 272 342 0 chr15 40595447 40595561 -60784960 + MER5A DNA MER1_type 2 154 -35 674 288 44 40 chr15 40596061 40596311 -60784210 + MIR SINE MIR 2 252 -10 1432 139 48 91 chr15 40597321 40597519 -60783002 - AluJb SINE Alu -1 311 129 2035 92 20 27 chr15 40597519 40597812 -60782709 + AluSp SINE Alu 1 291 -22 1432 139 48 91 chr15 40597812 40597922 -60782599 - AluJb SINE Alu -183 129 16 2016 108 31 3 chr15 40598082 40598370 -60782151 + AluSx SINE Alu 1 296 -16 518 287 169 33 chr15 40598396 40598668 -60781853 - L2 LINE L2 -2 3311 3003 1647 139 87 14 chr15 40600305 40600592 -60779929 - AluJb SINE Alu -4 308 1 767 172 210 0 chr15 40601745 40601902 -60778619 - MER3 DNA MER1_type -14 195 6 1290 148 118 53 chr15 40602644 40602885 -60777636 + MER33 DNA MER1_type 1 268 -2317 2011 110 7 0 chr15 40602885 40603192 -60777329 - AluSx SINE Alu 0 319 11 1290 148 118 53 chr15 40603192 40603253 -60777268 + MER33 DNA MER1_type 268 324 0 2419 81 0 7 chr15 40604222 40604519 -60776002 + AluSg SINE Alu 1 295 -15 529 210 10 0 chr15 40604837 40604937 -60775584 + Charlie5 DNA MER1_type 1 101 -2511 1154 129 12 0 chr15 40604940 40605110 -60775411 - AluSg/x SINE Alu -14 296 125 1114 157 95 19 chr15 40605128 40605390 -60775131 + Charlie5 DNA MER1_type 2234 2515 -97 1362 316 73 13 chr15 40606259 40606888 -60773633 + L2 LINE L2 731 1397 -1917 215 300 62 0 chr15 40606889 40606969 -60773552 + L2 LINE L2 1536 1620 -1694 1090 132 107 0 chr15 40606988 40607185 -60773336 + MER44D DNA MER2_type 32 519 -90 1597 118 49 0 chr15 40607188 40607434 -60773087 - Tigger2 DNA MER2_type 0 2718 2461 3216 139 29 89 chr15 40607490 40607705 -60772816 - Tigger2 DNA MER2_type -1974 744 518 779 177 8 0 chr15 40607705 40607829 -60772692 - FLAM_A SINE Alu -4 129 5 3216 139 29 89 chr15 40607829 40608126 -60772395 - Tigger2 DNA MER2_type -2200 518 205 2162 97 20 10 chr15 40608126 40608424 -60772097 - AluSq SINE Alu -12 301 1 3216 139 29 89 chr15 40608424 40608454 -60772067 - Tigger2 DNA MER2_type -2513 205 175 2079 130 7 7 chr15 40608454 40608753 -60771768 - AluSx SINE Alu -13 299 1 3216 139 29 89 chr15 40608753 40608862 -60771659 - Tigger2 DNA MER2_type -2543 175 130 1076 156 0 0 chr15 40608862 40609016 -60771505 + AluJb SINE Alu 136 289 -23 789 189 0 0 chr15 40609017 40609160 -60771361 - Tigger2 DNA MER2_type -2575 143 1 530 172 11 0 chr15 40609160 40609246 -60771275 + MER44D DNA MER2_type 519 605 0 500 311 72 14 chr15 40609274 40609483 -60771038 + L2 LINE L2 2489 2709 -605 376 337 111 11 chr15 40609749 40609930 -60770591 + L2 LINE L2 2717 2915 -399 1967 113 0 8 chr15 40610065 40610330 -60770191 + AluSx SINE Alu 42 304 -8 411 279 108 0 chr15 40610367 40610496 -60770025 + MIR SINE MIR 110 252 -10 23 0 0 0 chr15 40611721 40611744 -60768777 + AT_rich Low_complexity Low_complexity 1 23 0 660 271 40 56 chr15 40611773 40611934 -60768587 + Charlie8 DNA MER1_type 1 158 -183 2184 102 7 3 chr15 40611934 40612229 -60768292 + AluSx SINE Alu 2 297 -15 660 271 40 56 chr15 40612229 40612318 -60768203 + Charlie8 DNA MER1_type 158 247 -94 1649 149 97 14 chr15 40612322 40612610 -60767911 - AluSx SINE Alu 0 312 1 883 141 0 8 chr15 40612617 40612745 -60767776 - FLAM_C SINE Alu -16 127 1 2154 104 3 10 chr15 40613073 40613372 -60767149 - AluSq SINE Alu -16 297 1 1472 157 3 105 chr15 40613454 40613778 -60766743 + AluJo SINE Alu 5 295 -17 1993 142 10 7 chr15 40614448 40614750 -60765771 - AluSx SINE Alu -9 303 1 367 299 33 48 chr15 40614829 40615018 -60765503 - MIR SINE MIR -56 206 27 4802 148 81 45 chr15 40615042 40615991 -60764530 - L1MB7 LINE L1 0 6184 5271 9074 168 20 44 chr15 40615991 40616386 -60764135 - L1PA15 LINE L1 -6 6159 5756 1718 82 182 43 chr15 40616386 40616715 -60763806 + THE1C LTR MaLR 1 375 0 9074 168 20 44 chr15 40616715 40618798 -60761723 - L1PA15 LINE L1 -409 5756 3739 2473 63 0 13 chr15 40618798 40619100 -60761421 - AluY SINE Alu -13 298 1 9074 168 20 44 chr15 40619100 40619225 -60761296 - L1PA15 LINE L1 -2426 3739 3613 4802 148 81 45 chr15 40619225 40619551 -60760970 - L1MB7 LINE L1 -913 5271 4891 305 212 10 50 chr15 40619573 40619672 -60760849 - L1ME4a LINE L1 -72 6049 5955 420 296 9 9 chr15 40619707 40619822 -60760699 - MIR SINE MIR -105 157 43 1665 195 0 35 chr15 40620090 40620403 -60760118 - AluJo SINE Alu -10 302 1 29 28 0 0 chr15 40620537 40620573 -60759948 + AT_rich Low_complexity Low_complexity 1 36 0 2272 110 7 0 chr15 40620588 40620896 -60759625 - AluSx SINE Alu -1 311 2 603 291 137 8 chr15 40620918 40621348 -60759173 - L1ME4a LINE L1 -294 5876 5503 423 0 0 0 chr15 40621348 40621395 -60759126 + (TG)n Simple_repeat Simple_repeat 2 48 0 603 291 137 8 chr15 40621395 40621715 -60758806 - L1ME4a LINE L1 -667 5503 5016 802 147 0 0 chr15 40621719 40621835 -60758686 - AluYa5 SINE Alu -62 249 134 2487 61 3 7 chr15 40621954 40622264 -60758257 + AluSc SINE Alu 1 309 0 1357 190 6 80 chr15 40622272 40622598 -60757923 + AluJb SINE Alu 1 302 -10 2349 93 7 0 chr15 40622623 40622925 -60757596 - AluSx SINE Alu -8 304 1 2335 99 7 0 chr15 40624916 40625220 -60755301 - AluSp SINE Alu -7 306 1 182 258 0 0 chr15 40625918 40625949 -60754572 - L2 LINE L2 -18 3254 3224 2262 114 0 3 chr15 40627099 40627406 -60753115 - AluSg SINE Alu -4 306 1 1194 74 27 0 chr15 40627670 40627818 -60752703 - L1PA8 LINE L1 -15 6157 6006 21 0 0 0 chr15 40627862 40627883 -60752638 + AT_rich Low_complexity Low_complexity 1 21 0 285 253 137 14 chr15 40627898 40628044 -60752477 - L1ME4a LINE L1 -2 6119 5956 869 199 50 0 chr15 40628089 40628250 -60752271 - FRAM SINE Alu -6 170 2 2276 101 7 0 chr15 40628680 40628977 -60751544 + AluSp SINE Alu 1 299 -14 257 216 20 0 chr15 40628983 40629034 -60751487 + MIR SINE MIR 56 107 -155 1873 160 0 0 chr15 40629069 40629356 -60751165 - AluJb SINE Alu -12 300 14 2009 145 0 23 chr15 40629363 40629673 -60750848 - AluSx SINE Alu -9 303 1 3861 136 20 9 chr15 40629699 40630284 -60750237 - L1 LINE L1 -1665 4481 3887 2298 98 0 13 chr15 40630284 40630590 -60749931 - AluY SINE Alu -9 302 1 3861 136 20 9 chr15 40630590 40630657 -60749864 - L1 LINE L1 -2259 3887 3822 1614 139 27 131 chr15 40630863 40631200 -60749321 - AluJo SINE Alu 0 302 1 1463 170 71 54 chr15 40631449 40631785 -60748736 + MER2 DNA MER2_type 2 343 -1 2434 76 10 19 chr15 40632455 40632769 -60747752 + AluY SINE Alu 1 311 0 256 293 17 0 chr15 40633051 40633109 -60747412 - L2 LINE L2 -7 3265 3207 354 316 128 37 chr15 40633377 40633564 -60746957 - MIR SINE MIR -57 205 2 1956 123 47 0 chr15 40635101 40635377 -60745144 - AluSx SINE Alu -23 289 1 226 265 0 0 chr15 40635481 40635530 -60744991 + Charlie4 DNA MER1_type 2 50 -1911 1449 261 97 21 chr15 40635743 40636219 -60744302 + LTR33A LTR ERVL 4 515 -8 384 292 56 50 chr15 40636520 40636681 -60743840 + MIR3 SINE MIR 9 170 -38 30 27 0 0 chr15 40636718 40636755 -60743766 + AT_rich Low_complexity Low_complexity 1 37 0 2182 61 27 24 chr15 40636944 40637237 -60743284 - AluY SINE Alu -17 294 1 1794 138 10 61 chr15 40637544 40637704 -60742817 - AluJb SINE Alu -16 296 158 2381 104 0 0 chr15 40637704 40638011 -60742510 - AluSx SINE Alu -5 307 1 1794 138 10 61 chr15 40638011 40638162 -60742359 - AluJb SINE Alu -154 158 1 2173 102 17 0 chr15 40638192 40638486 -60742035 - AluSx SINE Alu -13 299 1 225 0 0 0 chr15 40638900 40638925 -60741596 + (A)n Simple_repeat Simple_repeat 1 25 0 918 285 85 38 chr15 40639093 40639618 -60740903 + L1ME4a LINE L1 5270 5828 -293 2238 84 17 13 chr15 40639618 40639917 -60740604 - AluY SINE Alu -11 300 1 918 285 85 38 chr15 40639917 40639991 -60740530 + L1ME4a LINE L1 5828 5897 -224 330 238 25 12 chr15 40639998 40640078 -60740443 + L2 LINE L2 3232 3312 -1 302 163 0 0 chr15 40640119 40640168 -60740353 + L1ME4a LINE L1 5973 6021 -100 30 0 0 0 chr15 40640211 40640241 -60740280 + AT_rich Low_complexity Low_complexity 1 30 0 1561 156 80 8 chr15 40640241 40640504 -60740017 - AluJo SINE Alu -30 282 1 1020 181 12 0 chr15 40641705 40641871 -60738650 + FRAM SINE Alu 1 167 -9 1742 170 14 7 chr15 40642044 40642332 -60738189 - AluJb SINE Alu -22 290 1 768 211 51 11 chr15 40642429 40642604 -60737917 + MIR SINE MIR 62 243 -19 1841 148 35 0 chr15 40644016 40644306 -60736215 - AluJo SINE Alu -12 300 1 601 243 70 5 chr15 40644362 40644547 -60735974 - L1ME3A LINE L1 -222 5948 5752 470 248 15 15 chr15 40644542 40644675 -60735846 + L1M4 LINE L1 3922 4054 -2092 * 349 222 0 0 chr15 40644712 40644793 -60735728 - L1ME3A LINE L1 -2358 5427 5347 460 280 64 6 chr15 40644798 40644955 -60735566 + LTR33 LTR ERVL 1 166 -355 801 293 65 31 chr15 40645102 40645454 -60735067 - L1ME3A LINE L1 -1070 5076 4713 1909 166 0 0 chr15 40645481 40645783 -60734738 - AluSx SINE Alu -9 303 2 18713 130 21 94 chr15 40646244 40647630 -60732891 - L1P LINE L1 -2506 3640 2154 2370 90 0 7 chr15 40647630 40647931 -60732590 - AluSc SINE Alu -9 300 2 18713 130 21 94 chr15 40647931 40650459 -60730062 - L1P LINE L1 -3992 2154 12 343 316 66 74 chr15 40650745 40651001 -60729520 - L2 LINE L2 -5 3267 3014 317 319 40 31 chr15 40651699 40651925 -60728596 - L2 LINE L2 -1171 2143 1916 1796 162 40 0 chr15 40651940 40652236 -60728285 + AluJo SINE Alu 1 308 -4 861 244 85 0 chr15 40652403 40652674 -60727847 + AluJo SINE Alu 15 308 -4 230 337 35 0 chr15 40653263 40653349 -60727172 - L2 LINE L2 -1891 1423 1335 1080 226 28 0 chr15 40653449 40653701 -60726820 - LTR33 LTR ERVL -1 520 262 517 252 44 65 chr15 40653912 40654005 -60726516 + L1M4 LINE L1 3202 3296 -2850 1354 151 28 117 chr15 40654005 40654169 -60726352 + AluYb8 SINE Alu 1 123 -195 2242 99 10 0 chr15 40654169 40654463 -60726058 + AluSx SINE Alu 1 297 -15 1354 151 28 117 chr15 40654463 40654623 -60725898 + AluYb8 SINE Alu 123 296 -22 517 252 44 65 chr15 40654623 40654850 -60725671 + L1M4 LINE L1 3296 3515 -2631 859 122 0 0 chr15 40654907 40655022 -60725499 - FLAM_C SINE Alu -17 126 12 202 224 105 26 chr15 40655081 40655157 -60725364 + L2 LINE L2 3191 3272 -41 1872 128 7 47 chr15 40655545 40655841 -60724680 + AluSx SINE Alu 1 284 -28 191 30 0 61 chr15 40656162 40656195 -60724326 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 612 152 4 34 chr15 40657051 40657289 -60723232 + CT-rich Low_complexity Low_complexity 1 230 0 688 106 43 0 chr15 40657289 40657383 -60723138 - HY3 scRNA scRNA -3 98 1 310 164 14 14 chr15 40657388 40657461 -60723060 + L1ME4a LINE L1 6047 6119 -2 374 218 197 16 chr15 40657679 40657821 -60722700 + MIR SINE MIR 16 179 -68 858 142 0 57 chr15 40657849 40657990 -60722531 - FLAM_A SINE Alu 0 133 1 23 0 0 0 chr15 40658002 40658025 -60722496 + AT_rich Low_complexity Low_complexity 1 23 0 23171 136 43 44 chr15 40658183 40659395 -60721126 - L1MA3 LINE L1 -27 7697 6485 1210 196 20 42 chr15 40659395 40659701 -60720820 - AluSx SINE Alu -13 299 1 23171 136 43 44 chr15 40659701 40660354 -60720167 - L1MA3 LINE L1 -1239 6485 5833 2159 144 0 0 chr15 40660354 40660666 -60719855 - AluSx SINE Alu 0 312 1 23171 136 43 44 chr15 40660666 40661437 -60719084 - L1MA3 LINE L1 -1891 5833 5062 2249 153 81 27 chr15 40661437 40661478 -60719043 - MSTA LTR MaLR 0 428 391 2163 141 0 10 chr15 40661478 40661791 -60718730 + AluSx SINE Alu 1 310 -2 2249 153 81 27 chr15 40661791 40662155 -60718366 - MSTA LTR MaLR -37 391 1 23171 136 43 44 chr15 40662155 40663059 -60717462 - L1MA3 LINE L1 -2662 5062 4158 2192 115 0 3 chr15 40663059 40663354 -60717167 + AluY SINE Alu 1 294 -17 23171 136 43 44 chr15 40663354 40664064 -60716457 - L1MA3 LINE L1 -3566 4158 3449 1443 174 0 88 chr15 40664064 40664381 -60716140 - AluJb SINE Alu -23 289 1 23171 136 43 44 chr15 40664381 40665250 -60715271 - L1MA3 LINE L1 -4275 3449 2580 2086 129 3 0 chr15 40665250 40665545 -60714976 - AluSg SINE Alu -14 296 1 23171 136 43 44 chr15 40665545 40665877 -60714644 - L1MA3 LINE L1 -5144 2580 2249 2188 130 7 0 chr15 40665877 40666177 -60714344 - AluSx SINE Alu -10 302 1 23171 136 43 44 chr15 40666177 40668400 -60712121 - L1MA3 LINE L1 -5475 2249 15 300 225 150 0 chr15 40668423 40668449 -60712072 - L1MA10 LINE L1 -24 6310 6285 2349 201 79 28 chr15 40668449 40668970 -60711551 - L1ME1 LINE L1 -45 6121 5563 2309 124 0 0 chr15 40668970 40669276 -60711245 - AluSx SINE Alu -6 306 1 2349 201 79 28 chr15 40669276 40669360 -60711161 - L1ME1 LINE L1 -603 5563 5485 835 162 7 7 chr15 40669477 40669613 -60710908 + AluJo SINE Alu 1 136 -176 21 0 0 0 chr15 40670123 40670144 -60710377 + AT_rich Low_complexity Low_complexity 1 21 0 224 262 0 16 chr15 40670163 40670224 -60710297 - MIR SINE MIR -20 242 183 211 205 0 0 chr15 40670722 40670761 -60709760 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 263 170 113 0 chr15 40670761 40670814 -60709707 - L2 LINE L2 0 3313 3255 182 227 136 0 chr15 40671235 40671301 -60709220 + MIR SINE MIR 75 149 -59 496 264 91 53 chr15 40672370 40672578 -60707943 - MIR SINE MIR -1 261 46 1795 131 39 20 chr15 40672794 40673100 -60707421 + AluJo SINE Alu 1 312 0 313 270 0 0 chr15 40673604 40673678 -60706843 - MIR SINE MIR -149 113 40 259 228 139 0 chr15 40674074 40674175 -60706346 - Charlie7 DNA MER1_type -2453 159 45 1867 132 78 24 chr15 40674547 40674842 -60705679 + AluSx SINE Alu 1 311 -1 211 217 43 0 chr15 40674897 40674943 -60705578 - L2 LINE L2 -26 3246 3199 263 186 0 0 chr15 40675856 40675899 -60704622 + 5S rRNA rRNA 1 43 -78 256 268 27 98 chr15 40677085 40677197 -60703324 - MIR3 SINE MIR -54 154 51 1681 95 204 0 chr15 40677203 40677479 -60703042 - MER7A DNA MER2_type -1 336 18 262 289 155 0 chr15 40678341 40678438 -60702083 - MIR3 SINE MIR -29 179 68 2260 142 24 6 chr15 40678559 40678897 -60701624 + MER2 DNA MER2_type 1 344 0 874 114 0 54 chr15 40679152 40679301 -60701220 + FLAM_C SINE Alu 1 141 -2 2601 212 138 72 chr15 40679560 40679650 -60700871 - MER21B LTR ERV1 -5 858 775 2267 167 14 39 chr15 40679650 40680019 -60700502 - MER57A LTR ERV1 0 403 27 1419 168 112 28 chr15 40680019 40680305 -60700216 - AluJo SINE Alu -2 310 1 2267 167 14 39 chr15 40680305 40680326 -60700195 - MER57A LTR ERV1 -376 27 21 2029 128 3 0 chr15 40680326 40680615 -60699906 - AluSq SINE Alu -23 290 1 2267 167 14 39 chr15 40680615 40680636 -60699885 - MER57A LTR ERV1 -382 21 1 2601 212 138 72 chr15 40680636 40681350 -60699171 - MER21B LTR ERV1 -88 775 1 485 243 10 129 chr15 40681365 40681422 -60699099 + MER5B DNA MER1_type 1 63 -115 429 36 0 0 chr15 40681422 40681477 -60699044 + (CA)n Simple_repeat Simple_repeat 2 56 0 485 243 10 129 chr15 40681477 40681488 -60699033 + MER5B DNA MER1_type 63 74 -104 2033 122 19 0 chr15 40681488 40681817 -60698704 + AluSg SINE Alu 4 337 0 485 243 10 129 chr15 40681817 40681948 -60698573 + MER5B DNA MER1_type 74 178 0 2416 198 40 2 chr15 40682045 40682489 -60698032 - MER65C LTR ERV1 0 461 1 987 233 34 99 chr15 40682735 40682895 -60697626 + AluJb SINE Alu 1 170 -132 2262 88 3 14 chr15 40682895 40683189 -60697332 - AluSg SINE Alu -19 291 1 987 233 34 99 chr15 40683189 40683214 -60697307 + AluJb SINE Alu 170 195 -107 1460 121 0 0 chr15 40683214 40683404 -60697117 + AluSg/x SINE Alu 91 280 -32 987 233 34 99 chr15 40683404 40683539 -60696982 + AluJb SINE Alu 195 301 -1 238 250 0 0 chr15 40683539 40683583 -60696938 + MER8 DNA MER2_type 196 239 0 1728 157 19 26 chr15 40683780 40684093 -60696428 - AluJo SINE Alu -1 311 1 457 95 0 0 chr15 40684584 40684647 -60695874 - Alu SINE Alu -9 302 240 2156 90 0 28 chr15 40685062 40685350 -60695171 - AluSg SINE Alu -10 300 21 355 154 0 0 chr15 40685444 40685496 -60695025 + MSTC LTR MaLR 1 52 -376 1386 143 0 23 chr15 40685497 40685714 -60694807 + AluJo SINE Alu 1 212 -100 240 189 0 0 chr15 40685714 40685751 -60694770 + Alu SINE Alu 75 111 -22 621 58 0 0 chr15 40685752 40685838 -60694683 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 31 0 0 0 chr15 40685838 40685869 -60694652 + AT_rich Low_complexity Low_complexity 1 31 0 916 161 195 99 chr15 40685882 40686173 -60694348 + MSTC LTR MaLR 41 303 -125 1268 179 93 48 chr15 40686173 40686317 -60694204 - AluJo SINE Alu -8 304 168 2447 81 0 0 chr15 40686317 40686614 -60693907 - AluY SINE Alu -14 297 1 812 156 0 21 chr15 40686619 40686760 -60693761 - AluJo SINE Alu -174 138 1 916 161 195 99 chr15 40686760 40686822 -60693699 + MSTC LTR MaLR 303 428 0 297 312 0 0 chr15 40686880 40686957 -60693564 - LTR16A1 LTR ERVL 0 457 381 505 104 0 0 chr15 40686958 40687025 -60693496 + AluSp/q SINE Alu 231 297 -16 724 262 32 63 chr15 40687027 40687374 -60693147 - LTR16A1 LTR ERVL -67 390 55 205 200 89 0 chr15 40687647 40687692 -60692829 - L2 LINE L2 -2 3311 3263 1428 153 18 9 chr15 40687829 40688058 -60692463 - MER46A DNA MER2_type 0 236 6 814 255 57 21 chr15 40688524 40688806 -60691715 - MER20B DNA MER1_type -186 597 306 27 29 0 0 chr15 40688842 40688876 -60691645 + AT_rich Low_complexity Low_complexity 1 34 0 2200 81 18 0 chr15 40688926 40689211 -60691310 - AluSx SINE Alu -22 290 1 3810 167 74 6 chr15 40690296 40691009 -60689512 - L1MB8 LINE L1 -12 6166 5405 2230 126 0 7 chr15 40691344 40691654 -60688867 + AluSx SINE Alu 1 308 -4 398 276 75 46 chr15 40693069 40693120 -60687401 + MLT1J LTR MaLR 293 341 -170 4656 130 106 52 chr15 40693120 40693444 -60687077 + MER49 LTR ERV1 1 306 -617 225 0 0 0 chr15 40693444 40693469 -60687052 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 4656 130 106 52 chr15 40693469 40693543 -60686978 + MER49 LTR ERV1 306 375 -548 2306 89 0 3 chr15 40693543 40693845 -60686676 - AluY SINE Alu -10 301 1 4656 130 106 52 chr15 40693845 40693993 -60686528 + MER49 LTR ERV1 375 514 -409 2175 124 3 0 chr15 40693993 40694291 -60686230 + AluSx SINE Alu 1 299 -13 4656 130 106 52 chr15 40694291 40694618 -60685903 + MER49 LTR ERV1 514 923 0 398 276 75 46 chr15 40694618 40694740 -60685781 + MLT1J LTR MaLR 341 471 -40 260 93 116 0 chr15 40694733 40694776 -60685745 - MLT2C1 LTR ERVL -348 49 2 * 2050 156 0 0 chr15 40694802 40695109 -60685412 - AluJb SINE Alu -3 309 3 259 293 143 27 chr15 40695184 40695352 -60685169 - MIR3 SINE MIR -6 202 7 241 314 35 23 chr15 40695539 40695625 -60684896 - L2 LINE L2 -74 3198 3112 857 152 23 15 chr15 40695681 40695813 -60684708 + FLAM_C SINE Alu 1 133 0 664 173 21 13 chr15 40695821 40696062 -60684459 + GA-rich Low_complexity Low_complexity 1 243 0 338 87 22 0 chr15 40696105 40696151 -60684370 + MER20 DNA MER1_type 30 76 -143 3867 77 4 2 chr15 40696293 40696800 -60683721 - L1P LINE L1 -1812 4334 3827 258 32 0 0 chr15 40696800 40696831 -60683690 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 1105 140 26 79 chr15 40696838 40697067 -60683454 + MER20 DNA MER1_type 3 219 0 21 36 0 0 chr15 40698343 40698371 -60682150 + AT_rich Low_complexity Low_complexity 1 28 0 227 274 0 0 chr15 40698893 40698944 -60681577 + L3 LINE CR1 1421 1471 -106 2028 125 0 46 chr15 40699721 40700048 -60680473 - AluSx SINE Alu 0 312 1 582 254 152 5 chr15 40700349 40700566 -60679955 + MIR SINE MIR 13 261 -1 10276 50 1 7 chr15 40700844 40702106 -60678415 + L1PA3 LINE L1 54 1307 -4839 28033 27 10 0 chr15 40702106 40706025 -60674496 + L1PA3 LINE L1 2224 6155 0 5287 232 89 24 chr15 40706025 40708051 -60672470 + L1M4 LINE L1 17 2163 -4483 252 0 0 0 chr15 40708309 40708337 -60672184 + (CA)n Simple_repeat Simple_repeat 1 28 0 453 285 0 35 chr15 40709037 40709209 -60671312 + L1MEd LINE L1 1022 1187 -4932 943 143 6 66 chr15 40709804 40709986 -60670535 - AluJb SINE Alu -141 171 1 2035 131 18 50 chr15 40709998 40710341 -60670180 - L1MB5 LINE L1 0 6410 6079 2100 95 0 83 chr15 40711244 40711571 -60668950 + AluSx SINE Alu 1 300 -12 326 103 184 92 chr15 40711571 40711658 -60668863 - MER57-int LTR ERV1 -2194 5343 5249 * 1743 104 8 4 chr15 40711657 40711908 -60668613 - MER57-int LTR ERV1 -2572 2645 2394 1828 193 29 33 chr15 40712140 40712709 -60667812 - L1MB5 LINE L1 -428 5982 5423 1895 224 36 19 chr15 40712727 40713234 -60667287 - L1MB5 LINE L1 -2448 3934 3437 1623 65 0 0 chr15 40713234 40713433 -60667088 - AluY SINE Alu 0 311 113 1895 224 36 19 chr15 40713433 40713475 -60667046 - L1MB5 LINE L1 -2945 3437 3397 1244 209 19 60 chr15 40713475 40713640 -60666881 - AluJb SINE Alu 0 302 155 1740 176 0 0 chr15 40713640 40713935 -60666586 - AluSx SINE Alu -15 297 3 1244 209 19 60 chr15 40713935 40714084 -60666437 - AluJb SINE Alu -147 155 1 1895 224 36 19 chr15 40714084 40714119 -60666402 - L1MB5 LINE L1 -2985 3397 3339 1836 218 106 119 chr15 40714451 40715466 -60665055 - L1MB5 LINE L1 -3685 2697 1670 611 167 167 0 chr15 40715466 40715568 -60664953 - AluJb SINE Alu -193 119 1 1836 218 106 119 chr15 40715568 40715872 -60664649 - L1MB5 LINE L1 -4712 1670 1302 2058 129 3 3 chr15 40715872 40716166 -60664355 - AluSq SINE Alu -19 294 1 1836 218 106 119 chr15 40716166 40716274 -60664247 - L1MB5 LINE L1 -5080 1302 1194 2027 118 6 48 chr15 40716275 40716590 -60663931 - AluSq SINE Alu -11 302 1 937 144 8 0 chr15 40718212 40718344 -60662177 - FLAM_C SINE Alu 0 133 1 344 313 125 82 chr15 40719354 40719770 -60660751 - L2 LINE L2 0 3272 2839 1081 181 70 0 chr15 40719777 40719992 -60660529 - AluJo SINE Alu -82 230 1 494 325 175 12 chr15 40720003 40720329 -60660192 - L2 LINE L2 -2260 1054 676 225 0 0 0 chr15 40721102 40721127 -60659394 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1396 234 92 28 chr15 40722775 40723074 -60657447 - L1ME1 LINE L1 -7 6159 5828 2444 61 0 3 chr15 40723074 40723370 -60657151 - AluY SINE Alu -16 295 1 1396 234 92 28 chr15 40723370 40723463 -60657058 - L1ME1 LINE L1 -338 5828 5742 802 212 77 84 chr15 40723480 40723635 -60656886 - L1ME1 LINE L1 -615 5551 5396 1605 207 4 4 chr15 40723635 40723915 -60656606 - AluSx SINE Alu -29 283 4 802 212 77 84 chr15 40723915 40724114 -60656407 - L1ME1 LINE L1 -770 5396 5195 2422 66 10 7 chr15 40724115 40724420 -60656101 - AluY SINE Alu -5 306 1 306 292 11 11 chr15 40724421 40724510 -60656011 - L1MEc LINE L1 -4899 1485 1397 3003 184 28 3 chr15 40724635 40725201 -60655320 - L1MC3 LINE L1 -155 7630 7051 230 220 0 0 chr15 40725200 40725250 -60655271 - L1MEc LINE L1 -5572 991 942 * 1304 271 36 26 chr15 40725265 40725733 -60654788 - L1MEc LINE L1 -5600 963 491 22 70 0 0 chr15 40725859 40725902 -60654619 + AT_rich Low_complexity Low_complexity 1 43 0 314 27 0 0 chr15 40726214 40726251 -60654270 + AluY SINE Alu 21 57 -246 690 246 80 26 chr15 40726255 40726568 -60653953 + L1MDa LINE L1 2129 2458 -4082 1094 235 43 4 chr15 40726571 40726848 -60653673 + L1MDa LINE L1 3797 4084 -2456 1966 120 19 19 chr15 40726848 40727157 -60653364 + AluSx SINE Alu 1 309 -3 1626 159 85 0 chr15 40728935 40729206 -60651315 - AluJb SINE Alu -18 294 1 180 0 0 0 chr15 40729381 40729401 -60651120 + (TA)n Simple_repeat Simple_repeat 2 21 0 779 183 9 0 chr15 40729409 40729524 -60650997 - FLAM_C SINE Alu -26 117 2 1097 182 52 0 chr15 40730154 40730346 -60650175 - AluJo SINE Alu -24 288 87 485 243 5 141 chr15 40730369 40730575 -60649946 + MER5B DNA MER1_type 1 178 0 3745 121 9 7 chr15 40730614 40731160 -60649361 - L1PB1 LINE L1 -4 6147 5601 4524 68 28 6 chr15 40731160 40732132 -60648389 + MER11A LTR ERVK 5 1235 -31 10526 189 5 20 chr15 40732143 40732963 -60647558 - L1PB1 LINE L1 -542 5609 4778 2169 108 0 23 chr15 40732963 40733270 -60647251 - AluY SINE Alu -11 300 1 10526 189 5 20 chr15 40733270 40734566 -60645955 - L1PB1 LINE L1 -1373 4778 3538 2146 136 0 13 chr15 40734566 40734882 -60645639 - AluSx SINE Alu 0 312 1 10526 189 5 20 chr15 40734882 40735377 -60645144 - L1PB1 LINE L1 -2613 3538 3037 2175 108 27 0 chr15 40735381 40735678 -60644843 - AluSq SINE Alu -8 305 1 23 33 0 0 chr15 40735748 40735778 -60644743 + AT_rich Low_complexity Low_complexity 1 30 0 1933 99 4 0 chr15 40735820 40736082 -60644439 - AluSc SINE Alu -3 306 44 1544 217 119 40 chr15 40736589 40737059 -60643462 + MLT1H LTR MaLR 1 507 -42 2354 83 0 3 chr15 40737059 40737360 -60643161 - AluY SINE Alu -11 300 1 1095 179 43 83 chr15 40737385 40737577 -60642944 - L1MA8 LINE L1 -5 6286 6111 2263 58 0 0 chr15 40737577 40737835 -60642686 - AluY SINE Alu -19 292 35 1095 179 43 83 chr15 40737835 40737967 -60642554 - L1MA8 LINE L1 -180 6111 5975 389 288 98 37 chr15 40738019 40738234 -60642287 + HAL1b LINE L1 515 742 -606 260 240 22 84 chr15 40739653 40739832 -60640689 + L1M3 LINE L1 4665 4832 -1314 549 315 84 18 chr15 40739933 40740386 -60640135 + L1M3 LINE L1 5330 5816 -364 958 127 0 7 chr15 40740496 40740646 -60639875 - L1MA1 LINE L1 0 6302 6154 21 36 0 0 chr15 40740660 40740688 -60639833 + AT_rich Low_complexity Low_complexity 1 28 0 475 211 86 8 chr15 40741061 40741189 -60639332 - AluJb SINE Alu -170 142 5 5149 143 140 7 chr15 40742005 40742905 -60637616 + LTR28 LTR ERV1 1 1020 0 22 0 0 0 chr15 40743447 40743469 -60637052 + AT_rich Low_complexity Low_complexity 1 22 0 230 53 26 0 chr15 40743862 40743900 -60636621 + MER5C DNA MER1_type 76 114 -210 2247 122 3 0 chr15 40743901 40744205 -60636316 - AluSx SINE Alu -7 305 1 419 281 124 22 chr15 40744766 40744951 -60635570 - MIR SINE MIR -32 230 27 3974 28 0 10 chr15 40745579 40746072 -60634449 - L1PA3 LINE L1 -2953 3193 2706 18806 31 0 1 chr15 40746073 40749074 -60631447 + L1PA3 LINE L1 3168 6175 0 327 212 248 44 chr15 40749791 40749928 -60630593 - MER20B DNA MER1_type -595 188 24 1958 158 30 0 chr15 40750064 40750362 -60630159 - AluSx SINE Alu -5 307 1 306 213 191 64 chr15 40750879 40751020 -60629501 + L2 LINE L2 3109 3267 -5 246 316 0 32 chr15 40751155 40751250 -60629271 + MIR3 SINE MIR 15 106 -102 239 289 0 0 chr15 40752609 40752661 -60627860 - LTR30 LTR ERV1 -670 52 1 10644 97 16 18 chr15 40752664 40752946 -60627575 - HERV9 LTR ERV1 -2 8397 8116 2397 85 3 7 chr15 40752946 40753251 -60627270 + AluY SINE Alu 1 304 -7 10644 97 16 18 chr15 40753251 40754482 -60626039 - HERV9 LTR ERV1 -283 8116 6887 * 14069 102 3 4 chr15 40754480 40756377 -60624144 - HERV9 LTR ERV1 -2831 5568 3674 18464 118 13 30 chr15 40756383 40758440 -60622081 + L1P LINE L1 11 2007 -4139 2326 116 0 0 chr15 40758440 40758751 -60621770 + AluY SINE Alu 1 311 0 18464 118 13 30 chr15 40758751 40759613 -60620908 + L1P LINE L1 2007 2882 -3264 7182 25 0 1 chr15 40759734 40760558 -60619963 - L1PA3 LINE L1 -79 6076 5254 770 137 15 23 chr15 40760561 40760692 -60619829 - AluJb SINE Alu -181 131 2 746 239 61 14 chr15 40760839 40761052 -60619469 + L1MB3 LINE L1 5729 5951 -232 636 71 12 0 chr15 40761185 40761269 -60619252 - AluSq/x SINE Alu -200 113 29 2113 135 3 0 chr15 40761295 40761598 -60618923 - AluSx SINE Alu -3 309 6 287 185 62 0 chr15 40761603 40761668 -60618853 + LTR37A LTR ERV1 287 355 -71 1636 193 3 17 chr15 40761668 40761969 -60618552 - AluJb SINE Alu -14 298 2 16229 75 2 3 chr15 40762361 40765359 -60615162 + L1PA6 LINE L1 3160 6153 -1 18355 119 12 18 chr15 40765361 40768940 -60611581 - HERV9 LTR ERV1 -4712 3687 54 724 174 50 0 chr15 40768962 40769083 -60611438 - LTR12 LTR ERV1 -236 478 352 293 266 21 11 chr15 40769083 40769177 -60611344 - LTR30 LTR ERV1 -104 618 524 898 205 16 21 chr15 40769245 40769435 -60611086 - LTR12 LTR ERV1 -510 204 16 1993 132 10 0 chr15 40769435 40769724 -60610797 + AluSx SINE Alu 13 304 -8 874 148 0 0 chr15 40769724 40769859 -60610662 - LTR8 LTR ERV1 -556 135 1 22219 133 51 49 chr15 40769859 40770672 -60609849 - HUERS-P1 LTR ERV1 0 6263 5453 1938 168 3 0 chr15 40770672 40770981 -60609540 - AluJb SINE Alu -2 310 1 22219 133 51 49 chr15 40770981 40774470 -60606051 - HUERS-P1 LTR ERV1 -810 5453 1242 186 43 0 0 chr15 40774470 40774493 -60606028 + (CA)n Simple_repeat Simple_repeat 2 24 0 22219 133 51 49 chr15 40774493 40775738 -60604783 - HUERS-P1 LTR ERV1 -5021 1242 1 4231 123 18 60 chr15 40775738 40776459 -60604062 - LTR8 LTR ERV1 0 691 1 1182 104 0 12 chr15 40777678 40777842 -60602679 + U1 snRNA snRNA 4 165 0 28 0 0 0 chr15 40777876 40777904 -60602617 + AT_rich Low_complexity Low_complexity 1 28 0 833 273 54 16 chr15 40778454 40778769 -60601752 - L2 LINE L2 -660 2654 2328 2479 116 13 84 chr15 40778770 40779235 -60601286 - MSTB1 LTR MaLR 0 432 1 7854 193 58 8 chr15 40779235 40780771 -60599750 - MSTB1-int LTR MaLR 0 1651 39 2354 91 0 10 chr15 40780771 40781069 -60599452 - AluY SINE Alu -16 295 1 359 310 63 0 chr15 40781076 40781234 -60599287 - L2 LINE L2 -1309 2005 1838 330 320 141 24 chr15 40781241 40781660 -60598861 - L2 LINE L2 0 3313 2846 1535 119 0 64 chr15 40782383 40782634 -60597887 + AluSx SINE Alu 1 235 -77 395 68 17 0 chr15 40782635 40782694 -60597827 + (GA)n Simple_repeat Simple_repeat 2 61 0 359 289 8 16 chr15 40782820 40782948 -60597573 + HAL1b LINE L1 521 647 -701 24 0 0 0 chr15 40783196 40783220 -60597301 + AT_rich Low_complexity Low_complexity 1 24 0 831 122 0 72 chr15 40783292 40783431 -60597090 + AluJo SINE Alu 7 135 -177 180 158 0 0 chr15 40783567 40783605 -60596916 + T-rich Low_complexity Low_complexity 1 38 0 35133 87 11 9 chr15 40783607 40789731 -60590790 - L1PA6 LINE L1 -1 6153 11 310 317 35 64 chr15 40789737 40789939 -60590582 + L1M4 LINE L1 2324 2519 -3627 227 237 26 13 chr15 40790008 40790084 -60590437 + L1M4 LINE L1 2662 2738 -3408 677 174 0 43 chr15 40790168 40790306 -60590215 + FLAM_C SINE Alu 2 133 0 701 227 0 6 chr15 40790326 40790502 -60590019 + L1M4 LINE L1 3608 3782 -2364 2331 90 13 7 chr15 40790509 40790810 -60589711 - AluSp SINE Alu -10 303 1 189 200 22 22 chr15 40790822 40790867 -60589654 - MER5B DNA MER1_type -124 54 10 361 247 47 100 chr15 40790968 40791027 -60589494 + MIR SINE MIR 8 69 -193 2281 105 0 3 chr15 40791027 40791333 -60589188 - AluY SINE Alu -6 305 1 361 247 47 100 chr15 40791333 40791463 -60589058 + MIR SINE MIR 69 187 -75 200 333 108 0 chr15 40792853 40792964 -60587557 - L2 LINE L2 -10 3303 3181 588 201 97 0 chr15 40793095 40793239 -60587282 + MIR SINE MIR 63 220 -42 973 172 63 77 chr15 40793281 40793566 -60586955 + MLT1D LTR MaLR 2 282 -223 186 314 0 0 chr15 40793880 40793931 -60586590 + MIR SINE MIR 177 227 -35 1233 180 79 0 chr15 40793931 40794198 -60586323 - MLT1D LTR MaLR 0 505 218 1429 172 108 13 chr15 40794655 40794969 -60585552 + MER2 DNA MER2_type 1 344 0 1115 196 14 19 chr15 40794990 40795204 -60585317 - AluJo SINE Alu -9 303 91 589 127 21 35 chr15 40795209 40795351 -60585170 - Charlie5 DNA MER1_type -62 2550 2411 1089 90 0 0 chr15 40795361 40795495 -60585026 + AluSx SINE Alu 3 136 -177 25 0 0 0 chr15 40795499 40795524 -60584997 + AT_rich Low_complexity Low_complexity 1 25 0 1177 140 0 6 chr15 40795533 40795711 -60584810 + AluSx SINE Alu 122 298 -12 545 173 122 8 chr15 40795713 40795844 -60584677 - MER33 DNA MER1_type -250 74 1 417 198 121 35 chr15 40795947 40796063 -60584458 - FLAM_C SINE Alu -4 129 4 2471 133 27 27 chr15 40796069 40796544 -60583977 - L1MA7 LINE L1 0 6291 5817 420 272 74 103 chr15 40797062 40797374 -60583147 - L2 LINE L2 -4 3268 2966 2290 112 3 0 chr15 40797406 40797709 -60582812 + AluSc SINE Alu 1 304 -5 407 309 111 11 chr15 40798643 40798824 -60581697 - MIR SINE MIR 0 262 64 646 263 42 33 chr15 40798824 40799250 -60581271 - L1MDa LINE L1 -2636 3904 3475 1643 192 10 7 chr15 40799257 40799565 -60580956 - AluJo SINE Alu -3 309 1 252 263 54 17 chr15 40799571 40799727 -60580794 - L1MDa LINE L1 -3858 2682 2518 2137 110 0 0 chr15 40800058 40800339 -60580182 - AluSx SINE Alu -31 281 1 576 139 122 26 chr15 40800360 40800475 -60580046 - FLAM_C SINE Alu -17 126 1 1023 220 69 4 chr15 40800573 40800805 -60579716 - MIR SINE MIR -14 248 2 21 0 0 0 chr15 40800937 40800958 -60579563 + AT_rich Low_complexity Low_complexity 1 21 0 241 237 0 0 chr15 40801113 40801172 -60579349 - MIR3 SINE MIR -11 197 139 1688 171 48 3 chr15 40801201 40801493 -60579028 - AluJo SINE Alu -7 305 1 2105 151 50 11 chr15 40801604 40802061 -60578460 + L1MB8 LINE L1 4869 5343 -803 4170 129 32 59 chr15 40802144 40802172 -60578349 + L1MB8 LINE L1 5348 5375 -803 1924 159 13 0 chr15 40802172 40802473 -60578048 + AluJb SINE Alu 1 305 -7 4170 129 32 59 chr15 40802473 40803295 -60577226 + L1MB8 LINE L1 5375 6175 -3 901 268 70 50 chr15 40803600 40804040 -60576481 - MLT1J LTR MaLR -4 507 59 1260 190 55 32 chr15 40804042 40804295 -60576226 + AluJo SINE Alu 1 259 -53 513 0 0 0 chr15 40804331 40804388 -60576133 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 2211 125 0 0 chr15 40804658 40804962 -60575559 - AluSc SINE Alu -5 304 1 964 143 23 6 chr15 40805950 40806125 -60574396 - MER61E LTR ERV1 -51 518 341 286 181 0 97 chr15 40806220 40806292 -60574229 - MER61E LTR ERV1 -406 163 99 233 389 74 17 chr15 40806634 40806809 -60573712 + MIR3 SINE MIR 10 194 -14 406 53 0 0 chr15 40806875 40806932 -60573589 + L1PA6 LINE L1 6097 6153 -1 2276 66 42 0 chr15 40807048 40807335 -60573186 - AluY SINE Alu -12 299 1 345 149 23 11 chr15 40807452 40807539 -60572982 + GA-rich Low_complexity Low_complexity 2 89 0 24 0 0 0 chr15 40808000 40808024 -60572497 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr15 40808803 40808824 -60571697 + AT_rich Low_complexity Low_complexity 1 21 0 249 209 45 0 chr15 40809169 40809236 -60571285 - MLT1K LTR MaLR -10 578 509 440 183 0 0 chr15 40809375 40809446 -60571075 - AluJb SINE Alu -32 280 210 1333 239 68 60 chr15 40809789 40810271 -60570250 + MLT1F LTR MaLR 1 486 -56 851 165 0 0 chr15 40810271 40810398 -60570123 + FLAM_C SINE Alu 1 127 -16 262 224 60 0 chr15 40810402 40810469 -60570052 + MLT1F LTR MaLR 497 567 0 865 142 0 127 chr15 40810697 40810798 -60569723 + MER20 DNA MER1_type 35 97 -122 2524 49 0 10 chr15 40810798 40811102 -60569419 - AluY SINE Alu -10 301 1 865 142 0 127 chr15 40811102 40811212 -60569309 + MER20 DNA MER1_type 97 219 0 2470 51 3 0 chr15 40811851 40812147 -60568374 - AluY SINE Alu -14 297 1 2430 75 7 0 chr15 40812716 40813021 -60567500 + AluY SINE Alu 1 307 -4 1669 174 3 30 chr15 40814099 40814403 -60566118 - AluJo SINE Alu -16 296 1 1093 163 0 100 chr15 40814428 40814501 -60566020 + AluJo SINE Alu 64 143 -169 1723 174 0 40 chr15 40814501 40814805 -60565716 + AluSx SINE Alu 1 292 -20 1093 163 0 100 chr15 40814805 40814970 -60565551 + AluJo SINE Alu 143 278 -34 198 0 0 0 chr15 40814970 40814992 -60565529 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 288 0 0 0 chr15 40814991 40815023 -60565498 + (CA)n Simple_repeat Simple_repeat 1 32 0 301 302 35 17 chr15 40815076 40815192 -60565329 + L1ME LINE L1 5614 5731 -390 804 176 5 64 chr15 40815196 40815383 -60565138 + AluJb SINE Alu 137 312 0 1768 149 14 14 chr15 40815434 40815730 -60564791 + AluSx SINE Alu 1 296 -16 2686 171 25 6 chr15 40816192 40816671 -60563850 + LTR42 LTR ERVL 8 495 0 1814 182 3 3 chr15 40816838 40817134 -60563387 - AluJb SINE Alu -14 298 3 274 122 0 0 chr15 40817280 40817321 -60563200 + U13 snRNA snRNA 5 45 -59 328 307 20 60 chr15 40817497 40817647 -60562874 + MIR SINE MIR 53 196 -66 2106 140 0 3 chr15 40818417 40818725 -60561796 - AluSx SINE Alu -5 307 1 205 340 125 28 chr15 40818974 40819118 -60561403 + MIR3 SINE MIR 16 173 -35 1760 178 20 0 chr15 40819330 40819623 -60560898 + AluJo SINE Alu 1 299 -13 1872 159 95 36 chr15 40819797 40820217 -60560304 + MER65A LTR ERV1 1 445 0 2511 74 6 3 chr15 40820262 40820574 -60559947 + AluSp SINE Alu 1 313 0 310 147 19 0 chr15 40820801 40820858 -60559663 - Alu SINE Alu -251 52 1 2133 78 11 4 chr15 40820900 40821170 -60559351 + AluSx SINE Alu 25 296 -16 206 0 69 0 chr15 40821855 40821884 -60558637 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1713 128 24 0 chr15 40822271 40822521 -60558000 + AluSg1 SINE Alu 41 296 -13 956 171 5 37 chr15 40823820 40824036 -60556485 + MER2 DNA MER2_type 1 209 -136 1103 201 14 18 chr15 40824161 40824380 -60556141 - AluJo SINE Alu -9 303 86 995 143 77 59 chr15 40824384 40824541 -60555980 - MER33 DNA MER1_type -2300 285 120 1279 161 20 141 chr15 40824541 40824889 -60555632 + AluYb8 SINE Alu 1 306 -2 995 143 77 59 chr15 40824889 40825022 -60555499 - MER33 DNA MER1_type -2465 120 1 430 191 122 35 chr15 40825125 40825240 -60555281 - FLAM_C SINE Alu -5 128 4 2552 126 27 27 chr15 40825251 40825726 -60554795 - L1MA7 LINE L1 0 6291 5817 462 262 63 110 chr15 40826252 40826569 -60553952 - L2 LINE L2 -4 3268 2967 2223 113 0 3 chr15 40826596 40826898 -60553623 + AluSc SINE Alu 1 301 -8 2188 78 3 53 chr15 40827248 40827567 -60552954 + AluY SINE Alu 1 303 -8 386 272 136 14 chr15 40828196 40828343 -60552178 - MIR SINE MIR -34 228 64 317 267 58 19 chr15 40828343 40828699 -60551822 - L1M4 LINE L1 -2636 3510 3128 1763 94 0 0 chr15 40828716 40828939 -60551582 - AluSc SINE Alu -86 223 1 911 160 23 6 chr15 40829927 40830102 -60550419 - MER61E LTR ERV1 -51 518 341 313 153 0 97 chr15 40830197 40830269 -60550252 - MER61E LTR ERV1 -406 163 99 * 453 212 62 0 chr15 40830266 40830379 -60550142 - LTR25 LTR ERV1 -431 363 244 268 371 74 17 chr15 40830610 40830785 -60549736 + MIR3 SINE MIR 10 194 -14 214 177 16 16 chr15 40831063 40831125 -60549396 + GA-rich Low_complexity Low_complexity 1 62 0 23 0 0 0 chr15 40832380 40832403 -60548118 + AT_rich Low_complexity Low_complexity 1 23 0 249 209 45 0 chr15 40832754 40832821 -60547700 - MLT1K LTR MaLR -10 578 509 446 169 0 56 chr15 40832930 40832944 -60547577 - AluJb SINE Alu -19 293 280 180 0 0 0 chr15 40832944 40832964 -60547557 + (TG)n Simple_repeat Simple_repeat 2 21 0 446 169 0 56 chr15 40832964 40833038 -60547483 - AluJb SINE Alu -32 280 210 1347 246 58 60 chr15 40833375 40833862 -60546659 + MLT1F LTR MaLR 1 486 -56 960 134 0 0 chr15 40833862 40833996 -60546525 + AluJo SINE Alu 1 134 -178 357 176 0 0 chr15 40833996 40834064 -60546457 + MLT1F LTR MaLR 500 567 0 906 113 41 97 chr15 40834294 40834489 -60546032 + MER20 DNA MER1_type 36 219 0 21 57 0 0 chr15 40834962 40834997 -60545524 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr15 40835264 40835292 -60545229 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr15 40835646 40835668 -60544853 + AT_rich Low_complexity Low_complexity 1 22 0 486 148 157 0 chr15 40835776 40835884 -60544637 + MER94 DNA DNA 10 134 0 282 207 16 41 chr15 40836217 40836338 -60544183 + (TA)n Simple_repeat Simple_repeat 2 119 0 683 125 29 0 chr15 40836396 40836500 -60544021 - U6 snRNA snRNA 0 107 1 2230 106 7 0 chr15 40836877 40837170 -60543351 + AluSx SINE Alu 1 295 -17 22 80 0 0 chr15 40837182 40837232 -60543289 + AT_rich Low_complexity Low_complexity 1 50 0 2244 111 0 3 chr15 40837242 40837540 -60542981 + AluSx SINE Alu 1 297 -15 2456 84 0 3 chr15 40837767 40838076 -60542445 + AluSq SINE Alu 1 308 -5 2248 101 0 7 chr15 40838276 40838584 -60541937 - AluY SINE Alu -5 306 1 1656 173 3 33 chr15 40840244 40840551 -60539970 - AluJo SINE Alu -14 298 1 1062 181 0 99 chr15 40840576 40840650 -60539871 + AluJo SINE Alu 64 144 -168 1513 174 0 51 chr15 40840650 40840944 -60539577 + AluSx SINE Alu 1 279 -33 1062 181 0 99 chr15 40840944 40841112 -60539409 + AluJo SINE Alu 144 282 -30 950 159 0 44 chr15 40841294 40841476 -60539045 + AluJb SINE Alu 137 310 -2 1944 135 0 26 chr15 40841539 40841843 -60538678 + AluSx SINE Alu 1 296 -16 2752 163 25 6 chr15 40842305 40842784 -60537737 + LTR42 LTR ERVL 8 495 0 1741 191 3 3 chr15 40842946 40843240 -60537281 - AluJb SINE Alu -14 298 5 268 156 0 0 chr15 40843378 40843423 -60537098 + U13 snRNA snRNA 1 45 -59 24 0 0 0 chr15 40843429 40843453 -60537068 + AT_rich Low_complexity Low_complexity 1 24 0 385 283 19 57 chr15 40843591 40843750 -60536771 + MIR SINE MIR 44 196 -66 645 120 29 6 chr15 40844426 40844601 -60535920 + (TA)n Simple_repeat Simple_repeat 1 179 0 32 43 0 0 chr15 40844602 40844648 -60535873 + AT_rich Low_complexity Low_complexity 1 46 0 2220 131 0 3 chr15 40844868 40845181 -60535340 - AluSx SINE Alu 0 312 1 205 340 125 28 chr15 40845430 40845574 -60534947 + MIR3 SINE MIR 16 173 -35 505 237 89 50 chr15 40845895 40845946 -60534575 - L1MC4 LINE L1 -2 8040 7992 2363 99 0 0 chr15 40845946 40846248 -60534273 + AluSc SINE Alu 1 302 -7 505 237 89 50 chr15 40846248 40846533 -60533988 - L1MC4 LINE L1 -50 7992 7691 752 271 96 27 chr15 40846535 40847049 -60533472 - L1MC4 LINE L1 -298 7510 6999 228 163 0 0 chr15 40847049 40847092 -60533429 + CT-rich Low_complexity Low_complexity 3 45 0 706 81 30 0 chr15 40847121 40847220 -60533301 - U6 snRNA snRNA -5 102 1 317 185 37 12 chr15 40847220 40847301 -60533220 - L1MC4 LINE L1 -989 7053 6971 317 148 19 0 chr15 40847411 40847465 -60533056 - MER57A LTR ERV1 -60 343 289 2095 112 0 39 chr15 40847734 40848039 -60532482 + AluSx SINE Alu 2 294 -18 378 200 191 26 chr15 40848315 40848430 -60532091 + MER5A DNA MER1_type 35 168 -21 235 173 19 0 chr15 40848465 40848517 -60532004 + (TA)n Simple_repeat Simple_repeat 2 54 0 288 211 30 4 chr15 40848540 40848778 -60531743 + (TA)n Simple_repeat Simple_repeat 1 244 0 1162 139 49 9 chr15 40848938 40849161 -60531360 + MER33 DNA MER1_type 5 236 -88 657 106 10 19 chr15 40849181 40849285 -60531236 - FAM SINE Alu -20 165 63 22 56 0 0 chr15 40849449 40849485 -60531036 + AT_rich Low_complexity Low_complexity 1 36 0 688 135 0 63 chr15 40849485 40849611 -60530910 - AluJb SINE Alu -194 118 1 186 250 145 13 chr15 40849611 40849687 -60530834 - MIR SINE MIR -111 151 66 411 194 83 46 chr15 40849691 40849799 -60530722 + L2 LINE L2 3160 3271 -1 1319 71 6 0 chr15 40850992 40851160 -60529361 - AluY SINE Alu -142 169 1 274 314 57 8 chr15 40851194 40851318 -60529203 + ERVL LTR ERVL 545 674 -5090 2499 57 0 16 chr15 40851469 40851785 -60528736 + AluY SINE Alu 1 311 0 1339 275 28 11 chr15 40851817 40852254 -60528267 + ERVL LTR ERVL 1055 1498 -4266 1136 89 0 19 chr15 40852758 40852916 -60527605 + AluY SINE Alu 157 311 0 1879 269 63 7 chr15 40852948 40853536 -60526985 + ERVL LTR ERVL 1055 1675 -4089 1873 157 104 27 chr15 40853554 40853967 -60526554 - MSTB2 LTR MaLR -12 445 1 4009 224 60 20 chr15 40853970 40855016 -60525505 + ERVL LTR ERVL 1678 2765 -2999 1840 76 8 38 chr15 40855016 40855280 -60525241 - AluY SINE Alu -7 304 49 712 189 73 24 chr15 40855285 40855491 -60525030 - MLT1B LTR MaLR -174 216 1 2028 118 0 38 chr15 40855701 40856016 -60524505 - AluSx SINE Alu -4 308 6 1905 154 16 7 chr15 40856273 40856578 -60523943 - AluJb SINE Alu -3 309 2 394 108 27 14 chr15 40856692 40856766 -60523755 + GA-rich Low_complexity Low_complexity 1 75 0 1043 132 0 0 chr15 40856890 40857034 -60523487 - AluSq/x SINE Alu -169 144 1 2145 133 56 3 chr15 40857043 40857420 -60523101 - L1MB4 LINE L1 0 6180 5784 2141 154 22 0 chr15 40857424 40857782 -60522739 - MER47A DNA MER2_type 0 366 1 1995 94 15 0 chr15 40858082 40858347 -60522174 - AluSq SINE Alu -22 291 23 403 254 61 6 chr15 40858509 40858674 -60521847 + MER65A LTR ERV1 272 445 0 215 260 0 0 chr15 40858680 40858719 -60521802 + A-rich Low_complexity Low_complexity 4 42 -38 1759 179 6 3 chr15 40858719 40859031 -60521490 + AluSp SINE Alu 1 313 0 215 260 0 0 chr15 40859031 40859068 -60521453 + A-rich Low_complexity Low_complexity 41 80 0 429 275 116 35 chr15 40859122 40859342 -60521179 + L1ME LINE L1 5239 5476 -686 5336 221 74 19 chr15 40859383 40860779 -60519742 - ERVL LTR ERVL -2615 3149 1678 438 115 11 46 chr15 40860782 40860869 -60519652 + MSTB2 LTR MaLR 1 84 -373 278 255 21 11 chr15 40860997 40861091 -60519430 - ERVL LTR ERVL -4892 872 778 263 292 34 11 chr15 40861166 40861255 -60519266 - ERVL LTR ERVL -5129 635 545 2201 101 0 3 chr15 40861291 40861587 -60518934 + AluY SINE Alu 3 297 -14 281 191 16 0 chr15 40861588 40861651 -60518870 - L1P LINE L1 -2379 3767 3704 1433 278 74 25 chr15 40861754 40862834 -60517687 - L1M4 LINE L1 -2901 3245 2113 1035 314 79 44 chr15 40862841 40863006 -60517515 - L1M4 LINE L1 -2971 3175 3017 2415 114 14 0 chr15 40863006 40863356 -60517165 + THE1A LTR MaLR 1 355 0 1035 314 79 44 chr15 40863356 40863676 -60516845 - L1M4 LINE L1 -3129 3017 2709 2107 118 3 0 chr15 40863676 40863964 -60516557 + AluSg SINE Alu 1 289 -21 1035 314 79 44 chr15 40863964 40864341 -60516180 - L1M4 LINE L1 -3437 2709 2271 2178 119 14 0 chr15 40864341 40864635 -60515886 - AluSq SINE Alu -15 298 1 1035 314 79 44 chr15 40864635 40864762 -60515759 - L1M4 LINE L1 -3875 2271 2150 22 35 0 0 chr15 40864805 40864834 -60515687 + AT_rich Low_complexity Low_complexity 1 29 0 595 103 0 0 chr15 40865298 40865376 -60515145 + AluS SINE Alu 1 78 -234 376 160 3 1 chr15 40865391 40865479 -60515042 + LOR1-int LTR ERV1 946 1312 -5446 1742 93 0 13 chr15 40866282 40866508 -60514013 - AluSg/x SINE Alu -16 294 72 702 244 89 26 chr15 40866508 40866762 -60513759 + L1M4 LINE L1 2814 3050 -3096 2392 100 0 0 chr15 40866762 40867072 -60513449 - AluSx SINE Alu -2 310 1 702 244 89 26 chr15 40867072 40867275 -60513246 + L1M4 LINE L1 3050 3300 -2846 402 201 92 55 chr15 40867517 40867681 -60512840 + L1MC5 LINE L1 7610 7779 -182 1219 119 0 0 chr15 40868387 40868555 -60511966 + AluSg/x SINE Alu 137 304 -8 33 25 0 0 chr15 40868556 40868596 -60511925 + AT_rich Low_complexity Low_complexity 1 40 0 278 318 47 0 chr15 40868706 40868835 -60511686 + L2 LINE L2 2252 2386 -928 409 212 93 42 chr15 40870030 40870148 -60510373 - L2 LINE L2 -1 3271 3148 719 127 0 63 chr15 40870216 40870342 -60510179 + AluJb SINE Alu 1 118 -194 22 56 0 0 chr15 40870342 40870378 -60510143 + AT_rich Low_complexity Low_complexity 1 36 0 2171 112 3 0 chr15 40870702 40870987 -60509534 - AluSx SINE Alu -26 286 1 339 122 12 98 chr15 40871592 40871674 -60508847 - MER33 DNA MER1_type -6 318 244 1043 164 0 6 chr15 40871678 40871843 -60508678 + FAM SINE Alu 2 165 -20 1168 137 47 9 chr15 40871859 40872093 -60508428 - MER33 DNA MER1_type -88 236 1 280 229 25 0 chr15 40872242 40872485 -60508036 + (TA)n Simple_repeat Simple_repeat 1 249 0 245 208 13 0 chr15 40872511 40872588 -60507933 + (TA)n Simple_repeat Simple_repeat 2 79 0 378 200 191 26 chr15 40872623 40872738 -60507783 - MER5A DNA MER1_type -21 168 35 2201 105 0 3 chr15 40873025 40873319 -60507202 - AluSx SINE Alu -18 294 2 2400 55 0 26 chr15 40873501 40873809 -60506712 - AluY SINE Alu -11 300 1 305 148 19 0 chr15 40873905 40873959 -60506562 + MER57A LTR ERV1 289 343 -60 329 173 37 12 chr15 40874069 40874150 -60506371 + L1MC4 LINE L1 6971 7053 -989 749 61 30 0 chr15 40874150 40874249 -60506272 + U6 snRNA snRNA 1 102 -5 228 163 0 0 chr15 40874278 40874321 -60506200 + GA-rich Low_complexity Low_complexity 3 45 0 762 265 33 19 chr15 40874322 40874835 -60505686 + L1MC4 LINE L1 7074 7629 -413 510 237 89 50 chr15 40874837 40875122 -60505399 + L1MC4 LINE L1 7691 7992 -50 2263 97 0 7 chr15 40875122 40875430 -60505091 - AluSc SINE Alu -3 306 1 510 237 89 50 chr15 40875430 40875481 -60505040 + L1MC4 LINE L1 7992 8040 -2 23 0 0 0 chr15 40875502 40875525 -60504996 + AT_rich Low_complexity Low_complexity 1 23 0 205 340 125 28 chr15 40875808 40875952 -60504569 - MIR3 SINE MIR -35 173 16 1995 169 0 3 chr15 40876201 40876514 -60504007 + AluSx SINE Alu 1 312 0 284 167 21 111 chr15 40876786 40876930 -60503591 + Charlie5 DNA MER1_type 2416 2546 -66 1255 164 14 18 chr15 40876934 40877153 -60503368 + AluJo SINE Alu 86 303 -9 1142 147 9 19 chr15 40877278 40877489 -60503032 - MER2 DNA MER2_type -136 209 1 1239 187 75 0 chr15 40877959 40878227 -60502294 + MLT1D LTR MaLR 218 505 0 198 294 0 0 chr15 40878227 40878278 -60502243 - MIR SINE MIR -35 227 177 1012 165 67 77 chr15 40878587 40878872 -60501649 - MLT1D LTR MaLR -223 282 1 579 201 97 0 chr15 40878913 40879057 -60501464 - MIR SINE MIR -42 220 63 200 333 108 0 chr15 40879188 40879299 -60501222 + L2 LINE L2 3181 3303 -10 348 304 47 20 chr15 40880685 40880833 -60499688 - MIR SINE MIR -55 207 56 1795 91 0 21 chr15 40880837 40881078 -60499443 + AluY SINE Alu 4 239 -72 529 167 0 12 chr15 40881178 40881262 -60499259 - AluJb SINE Alu -58 254 172 406 163 50 0 chr15 40881262 40881342 -60499179 + MER61E LTR ERV1 2 85 -484 227 104 104 0 chr15 40881362 40881410 -60499111 + LTR25 LTR ERV1 94 146 -648 * 618 157 9 0 chr15 40881399 40881507 -60499014 + LTR25 LTR ERV1 248 356 -438 308 241 8 47 chr15 40881510 40881638 -60498883 + MER61E LTR ERV1 75 189 -380 1155 141 45 5 chr15 40881687 40881886 -60498635 + MER61E LTR ERV1 341 547 -22 2134 157 19 11 chr15 40881919 40882295 -60498226 + MER61E-int LTR ERV1 29 407 -6589 1209 89 53 9 chr15 40882401 40882626 -60497895 - MER52-int LTR ERV1 -3347 4190 3956 636 179 86 0 chr15 40882617 40882734 -60497787 - MER52-int LTR ERV1 -2318 4773 4647 * 1630 225 28 18 chr15 40882731 40883166 -60497355 - MER52-int LTR ERV1 -5793 1203 765 206 159 14 43 chr15 40884085 40884154 -60496367 + T-rich Low_complexity Low_complexity 2 68 0 10535 136 24 32 chr15 40884254 40885754 -60494767 + MER61E-int LTR ERV1 2152 3662 -3334 2330 78 3 0 chr15 40885754 40886048 -60494473 + AluY SINE Alu 1 295 -16 10535 136 24 32 chr15 40886048 40886888 -60493633 + MER61E-int LTR ERV1 3662 6995 -1 428 169 0 119 chr15 40886890 40887008 -60493513 + MER61E LTR ERV1 1 104 -465 * 617 157 9 0 chr15 40886995 40887103 -60493418 + LTR25 LTR ERV1 248 356 -438 333 204 8 39 chr15 40887106 40887232 -60493289 + MER61E LTR ERV1 93 189 -380 431 105 9 114 chr15 40887285 40887390 -60493131 + MER61E LTR ERV1 341 434 -135 478 121 0 0 chr15 40887534 40887617 -60492904 + LTR25-int LTR ERV1 647 729 -6267 2438 90 3 0 chr15 40887651 40887961 -60492560 - AluY SINE Alu 0 311 1 381 291 7 33 chr15 40887982 40888133 -60492388 - LTR57-int LTR ERVL -3846 1497 1351 * 495 112 15 199 chr15 40888062 40888258 -60492263 - MER31-int LTR ERV1 -3250 1686 1527 10746 27 5 0 chr15 40888883 40890224 -60490297 - L1PA3 LINE L1 -1562 4584 3237 6844 26 0 0 chr15 40890224 40891671 -60488850 + L1PA3 LINE L1 4560 6006 -149 333 146 0 0 chr15 40891779 40891827 -60488694 - Alu SINE Alu -252 48 1 609 273 19 0 chr15 40892758 40892912 -60487609 + MIR SINE MIR 87 243 -19 1278 105 0 28 chr15 40893034 40893215 -60487306 + AluSg/x SINE Alu 137 312 0 247 203 0 17 chr15 40893661 40893720 -60486801 - L2 LINE L2 -13 3259 3202 240 314 51 8 chr15 40894189 40894307 -60486214 - MIR SINE MIR -71 191 69 2750 145 53 0 chr15 40895189 40895623 -60484898 + MSTB2 LTR MaLR 1 457 0 2006 135 24 3 chr15 40895750 40896047 -60484474 + AluSx SINE Alu 1 303 -9 197 264 57 0 chr15 40897146 40897199 -60483322 - MIR SINE MIR -66 142 87 295 313 57 12 chr15 40897492 40897738 -60482783 + L1ME4a LINE L1 5647 5903 -218 1309 171 34 42 chr15 40897925 40898164 -60482357 + AluJo SINE Alu 1 237 -75 423 231 39 58 chr15 40899523 40899679 -60480842 + MIR3 SINE MIR 30 182 -26 220 179 0 0 chr15 40902053 40902092 -60478429 + CT-rich Low_complexity Low_complexity 1 39 0 199 244 0 0 chr15 40904012 40904057 -60476464 + L2 LINE L2 3251 3295 -18 2285 71 0 14 chr15 40905222 40905518 -60475003 + AluY SINE Alu 20 311 0 180 0 0 0 chr15 40905844 40905864 -60474657 + (A)n Simple_repeat Simple_repeat 1 20 0 1228 105 139 38 chr15 40905992 40906201 -60474320 - MER30 DNA MER1_type 0 230 1 183 42 0 0 chr15 40906240 40906264 -60474257 + (CA)n Simple_repeat Simple_repeat 2 25 0 241 274 177 9 chr15 40906573 40906686 -60473835 + L2 LINE L2 3134 3265 -7 2288 101 7 0 chr15 40907345 40907633 -60472888 - AluSx SINE Alu -22 290 1 657 114 0 0 chr15 40908311 40908399 -60472122 + AluSg/x SINE Alu 209 296 -14 2078 130 31 3 chr15 40908449 40908742 -60471779 - AluSx SINE Alu -11 301 1 2033 141 3 3 chr15 40908785 40909075 -60471446 - AluJb SINE Alu -22 290 1 679 254 38 42 chr15 40909534 40909770 -60470751 - MIR SINE MIR -4 258 24 211 232 18 0 chr15 40910277 40910333 -60470188 - MIR SINE MIR -50 212 156 255 275 12 70 chr15 40910470 40910641 -60469880 + L1MB2 LINE L1 4673 4833 -1313 585 315 98 28 chr15 40910760 40911299 -60469222 + L1MB2 LINE L1 5352 5928 -243 1080 127 0 12 chr15 40911304 40911477 -60469044 - L1MA1 LINE L1 0 6302 6132 410 279 104 15 chr15 40911715 40911928 -60468593 - MIR SINE MIR -10 252 19 293 320 8 24 chr15 40912477 40912602 -60467919 + MLT1J2 LTR MaLR 19 141 -309 1505 240 63 11 chr15 40912652 40913031 -60467490 - MLT1H LTR MaLR 0 549 151 251 204 0 0 chr15 40913023 40913067 -60467454 + Charlie4 DNA MER1_type 1901 1944 -17 * 379 248 64 9 chr15 40914432 40914540 -60465981 - MIR SINE MIR -92 170 57 288 261 0 0 chr15 40914540 40914605 -60465916 + MER91B DNA MER1_type 1 65 -125 230 238 68 61 chr15 40914711 40914858 -60465663 + L1ME LINE L1 5678 5825 -296 618 299 104 24 chr15 40914947 40915275 -60465246 + ERVL LTR ERVL 4277 4630 -1134 1451 247 46 44 chr15 40915352 40915421 -60465100 + L1MDb LINE L1 9 76 -6333 7058 82 35 22 chr15 40915421 40916415 -60464106 - LTR13 LTR ERVK 0 1007 1 1451 247 46 44 chr15 40916415 40916823 -60463698 + L1MDb LINE L1 76 487 -5922 2312 97 0 7 chr15 40917859 40918159 -60462362 + AluY SINE Alu 1 298 -13 1540 288 107 26 chr15 40918236 40919274 -60461247 - L2 LINE L2 0 3313 2191 234 0 0 0 chr15 40920098 40920124 -60460397 + (CA)n Simple_repeat Simple_repeat 2 27 0 203 147 0 0 chr15 40920740 40920774 -60459747 + (CACAC)n Simple_repeat Simple_repeat 2 35 0 775 163 25 89 chr15 40921807 40922009 -60458512 + MER53 DNA DNA 1 189 0 247 294 130 0 chr15 40922136 40922228 -60458293 + MLT1J2 LTR MaLR 108 211 -338 2311 110 0 10 chr15 40922885 40923193 -60457328 - AluSp SINE Alu -8 305 1 448 251 114 75 chr15 40924517 40924802 -60455719 + L1ME4a LINE L1 5497 5800 -321 2381 76 7 3 chr15 40924802 40925103 -60455418 + AluY SINE Alu 1 302 -9 448 251 114 75 chr15 40925103 40925175 -60455346 + L1ME4a LINE L1 5800 5868 -253 211 369 72 38 chr15 40925396 40925632 -60454889 - L2 LINE L2 -4 3268 3025 202 259 0 0 chr15 40925665 40925719 -60454802 - L2 LINE L2 0 3272 3219 2163 76 11 4 chr15 40925719 40925996 -60454525 + AluY SINE Alu 31 309 -2 946 254 24 111 chr15 40926402 40926934 -60453587 - L2 LINE L2 -2 3311 2826 187 313 46 84 chr15 40926949 40927080 -60453441 + L2 LINE L2 3147 3272 0 2283 108 3 6 chr15 40927138 40927452 -60453069 + AluSq SINE Alu 1 313 0 306 148 0 0 chr15 40927517 40927571 -60452950 + (TGGA)n Simple_repeat Simple_repeat 3 56 0 325 311 175 23 chr15 40928955 40929132 -60451389 + MIR SINE MIR 47 250 -12 506 316 116 4 chr15 40929210 40929435 -60451086 + MIR SINE MIR 3 252 -10 212 254 34 0 chr15 40929924 40929983 -60450538 - MIR SINE MIR -154 108 48 249 108 0 0 chr15 40930056 40930093 -60450428 + (A)n Simple_repeat Simple_repeat 1 37 0 1258 230 202 3 chr15 40930628 40931019 -60449502 + LTR50 LTR ERVL 4 472 -323 486 191 9 38 chr15 40931109 40931214 -60449307 + LTR33A LTR ERVL 422 523 0 2348 84 0 3 chr15 40931515 40931847 -60448674 + AluY SINE Alu 1 311 0 1520 93 28 0 chr15 40931929 40932181 -60448340 + L1PA10 LINE L1 5949 6206 0 2302 41 7 17 chr15 40932218 40932509 -60448012 + L1PA4 LINE L1 5867 6154 -1 462 204 71 0 chr15 40932893 40932991 -60447530 + MER103 DNA DNA 13 117 -49 541 117 96 0 chr15 40933342 40933436 -60447085 + MER58 DNA MER1_type 2318 2420 0 706 194 15 112 chr15 40933778 40933974 -60446547 + MER63A DNA MER1_type 1 177 -33 1285 175 131 42 chr15 40934456 40934890 -60445631 + Charlie4a DNA MER1_type 34 506 -2 272 333 83 28 chr15 40934898 40935078 -60445443 - MIR SINE MIR -53 209 20 662 317 61 8 chr15 40935933 40936179 -60444342 - LTR16C LTR ERVL -3 488 230 691 179 152 7 chr15 40936277 40936428 -60444093 - MLT1B LTR MaLR -217 173 1 485 320 53 0 chr15 40937444 40937594 -60442927 + MER91A DNA MER1_type 20 177 -19 835 283 116 27 chr15 40937696 40938109 -60442412 + LTR16A LTR ERVL 1 450 0 2445 97 0 0 chr15 40938448 40938756 -60441765 + AluSg SINE Alu 1 308 -2 231 283 43 43 chr15 40939124 40939262 -60441259 + HAL1b LINE L1 754 891 -457 382 308 57 34 chr15 40939364 40939627 -60440894 + HAL1 LINE L1 2222 2490 -17 311 216 33 14 chr15 40939963 40940044 -60440477 + MIR SINE MIR 71 144 -64 313 333 0 0 chr15 40940278 40940374 -60440147 + MIR3 SINE MIR 81 176 -32 309 317 57 32 chr15 40941834 40941957 -60438564 - L2 LINE L2 -8 3305 3180 2462 52 3 0 chr15 40942080 40942385 -60438136 + AluY SINE Alu 1 306 -5 2037 146 27 29 chr15 40942545 40942921 -60437600 - THE1C LTR MaLR 0 375 1 267 311 34 0 chr15 40942921 40943040 -60437481 + LTR16A1 LTR ERVL 309 431 -26 181 281 0 62 chr15 40943046 40943110 -60437411 + MIR SINE MIR 92 151 -111 342 258 97 32 chr15 40943981 40944105 -60436416 - L1ME4a LINE L1 -14 6107 5976 410 304 0 37 chr15 40944841 40944976 -60435545 - MIR3 SINE MIR -1 207 78 204 296 0 19 chr15 40945291 40945345 -60435176 + MIR SINE MIR 114 166 -96 1211 201 134 108 chr15 40945566 40945977 -60434544 + MLT2B1 LTR ERVL 1 400 -120 2351 78 0 10 chr15 40945977 40946284 -60434237 - AluY SINE Alu -7 304 1 1211 201 134 108 chr15 40946284 40946307 -60434214 + MLT2B1 LTR ERVL 400 421 -99 345 62 0 0 chr15 40946307 40946355 -60434166 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 1211 201 134 108 chr15 40946355 40946426 -60434095 + MLT2B1 LTR ERVL 421 520 0 2942 170 32 4 chr15 40946967 40947460 -60433061 + L1P3 LINE L1 2 508 -5367 2415 46 0 13 chr15 40947467 40947770 -60432751 + AluY SINE Alu 1 299 -12 2162 220 90 13 chr15 40947782 40948459 -60432062 + L1M4 LINE L1 4107 4835 -1311 781 102 8 0 chr15 40948519 40948637 -60431884 - L1PA8 LINE L1 0 6172 6054 2200 70 30 7 chr15 40948652 40948952 -60431569 - AluY SINE Alu -4 307 1 666 267 20 0 chr15 40949889 40950039 -60430482 + MIR SINE MIR 93 245 -17 1129 116 0 29 chr15 40950162 40950334 -60430187 + AluSg/x SINE Alu 135 301 -9 276 203 0 17 chr15 40950782 40950841 -60429680 - L2 LINE L2 -13 3259 3202 193 281 105 0 chr15 40951165 40951222 -60429299 - MIR3 SINE MIR -21 187 125 287 314 51 8 chr15 40951310 40951428 -60429093 - MIR SINE MIR -71 191 69 2721 150 53 0 chr15 40952310 40952744 -60427777 + MSTB2 LTR MaLR 1 457 0 1872 138 20 3 chr15 40952871 40953167 -60427354 + AluSx SINE Alu 1 301 -11 204 283 57 0 chr15 40954276 40954329 -60426192 - MIR SINE MIR -66 142 87 323 276 44 82 chr15 40954525 40954844 -60425677 + L1ME4a LINE L1 5597 5903 -218 300 221 142 35 chr15 40954907 40955020 -60425501 + L1MC5 LINE L1 7467 7591 -370 1195 176 34 42 chr15 40955031 40955270 -60425251 + AluJo SINE Alu 1 237 -75 495 285 24 30 chr15 40956632 40956797 -60423724 + MIR3 SINE MIR 30 193 -15 220 179 0 0 chr15 40959136 40959175 -60421346 + CT-rich Low_complexity Low_complexity 1 39 0 2226 84 3 0 chr15 40959176 40959472 -60421049 - AluY SINE Alu -14 297 1 229 222 0 0 chr15 40961399 40961444 -60419077 + L2 LINE L2 3251 3295 -18 201 355 64 0 chr15 40961994 40962104 -60418417 + MIR SINE MIR 146 262 0 1227 105 139 38 chr15 40963065 40963274 -60417247 - MER30 DNA MER1_type 0 230 1 249 57 0 0 chr15 40963318 40963353 -60417168 + (CA)n Simple_repeat Simple_repeat 2 36 0 288 266 177 9 chr15 40963646 40963759 -60416762 + L2 LINE L2 3134 3265 -7 301 255 227 93 chr15 40964347 40964425 -60416096 + L1ME4a LINE L1 5795 5861 -260 2126 121 0 0 chr15 40964425 40964723 -60415798 - AluSx SINE Alu -14 298 1 301 255 227 93 chr15 40964723 40964860 -60415661 + L1ME4a LINE L1 5861 6039 -82 239 97 0 0 chr15 40965414 40965445 -60415076 + Alu SINE Alu 209 239 -61 2030 142 0 3 chr15 40965507 40965816 -60414705 - AluSx SINE Alu -3 309 2 1948 137 3 3 chr15 40965857 40966150 -60414371 - AluJb SINE Alu -19 293 1 849 233 38 42 chr15 40966604 40966844 -60413677 - MIR SINE MIR 0 262 24 2145 88 0 3 chr15 40966976 40967299 -60413222 - AluY SINE Alu 0 322 1 351 271 28 94 chr15 40967686 40967867 -60412654 - MIR SINE MIR -60 202 34 810 246 22 6 chr15 40969155 40969338 -60411183 - MIR SINE MIR -12 250 65 317 258 0 43 chr15 40969929 40970022 -60410499 + MIR SINE MIR 148 236 -26 306 286 29 38 chr15 40970059 40970164 -60410357 - MIR SINE MIR -121 141 38 306 253 25 139 chr15 40971458 40971703 -60408818 - L1MC4 LINE L1 0 8042 7826 965 201 4 64 chr15 40971764 40972013 -60408508 - L1ME2 LINE L1 -100 6064 5831 800 128 0 60 chr15 40972020 40972153 -60408368 + FLAM_C SINE Alu 1 125 -18 1420 194 20 31 chr15 40972168 40972462 -60408059 + AluJo SINE Alu 1 291 -21 280 186 14 43 chr15 40972543 40972613 -60407908 - L1ME2 LINE L1 -371 5793 5726 891 129 0 7 chr15 40972656 40972796 -60407725 - AluJb SINE Alu -2 310 172 396 235 67 27 chr15 40972796 40972945 -60407576 + MER61E LTR ERV1 2 156 -413 * 681 157 9 0 chr15 40972933 40973041 -60407480 + LTR25 LTR ERV1 248 356 -438 375 191 31 71 chr15 40973044 40973172 -60407349 + MER61E LTR ERV1 75 189 -380 1214 146 45 5 chr15 40973221 40973420 -60407101 + MER61E LTR ERV1 341 547 -22 1028 171 0 17 chr15 40973436 40973611 -60406910 - AluJb SINE Alu -136 176 5 261 344 104 0 chr15 40974456 40974581 -60405940 - MIR SINE MIR -12 250 113 188 151 0 151 chr15 40974763 40974816 -60405705 + MIR SINE MIR 204 248 -14 794 99 0 0 chr15 40974828 40974939 -60405582 + HY1 scRNA scRNA 1 111 -1 2128 129 0 0 chr15 40974999 40975308 -60405213 - AluSx SINE Alu -3 309 1 1989 125 0 10 chr15 40975499 40975796 -60404725 + AluSx SINE Alu 1 294 -18 1890 159 10 0 chr15 40976022 40976323 -60404198 - AluJo SINE Alu -8 304 1 1845 134 16 39 chr15 40976475 40976781 -60403740 - AluSx SINE Alu -13 299 1 604 269 94 34 chr15 40976867 40977042 -60403479 + MIR SINE MIR 7 201 -61 1829 165 3 0 chr15 40977042 40977351 -60403170 + AluSx SINE Alu 3 312 0 604 269 94 34 chr15 40977351 40977409 -60403112 + MIR SINE MIR 201 254 -8 413 329 72 66 chr15 40978269 40978588 -60401933 + L2 LINE L2 2947 3267 -5 1399 143 127 4 chr15 40978970 40979214 -60401307 + MLT2C2 LTR ERVL 1 274 -190 198 103 0 0 chr15 40979223 40979252 -60401269 + (CATA)n Simple_repeat Simple_repeat 4 32 0 245 171 0 0 chr15 40979252 40979293 -60401228 + MLT2B2 LTR ERVL 475 515 0 2186 113 0 0 chr15 40979492 40979803 -60400718 - AluSx SINE Alu -1 311 1 237 108 0 0 chr15 40982418 40982455 -60398066 + (TAG)n Simple_repeat Simple_repeat 1 37 0 2247 99 3 0 chr15 40982589 40982892 -60397629 + AluSx SINE Alu 3 306 -6 215 239 43 0 chr15 40982911 40982957 -60397564 - L2 LINE L2 -15 3257 3210 235 329 27 0 chr15 40982972 40983045 -60397476 - MIR SINE MIR -118 144 70 538 263 158 11 chr15 40983577 40983767 -60396754 - MIR SINE MIR -5 257 40 348 111 0 0 chr15 40983830 40983884 -60396637 + (GGAA)n Simple_repeat Simple_repeat 1 54 0 2870 79 3 0 chr15 40984013 40984392 -60396129 - L1PA8 LINE L1 0 6172 5793 329 57 0 19 chr15 40985251 40985304 -60395217 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 1642 121 0 37 chr15 40985344 40985616 -60394905 - AluJb SINE Alu -50 262 1 365 298 65 0 chr15 40986097 40986221 -60394300 + MIR SINE MIR 22 153 -109 2440 138 48 71 chr15 40986358 40986880 -60393641 + LTR54 LTR ERV1 1 510 0 1199 176 96 58 chr15 40986908 40987221 -60393300 - MER2 DNA MER2_type -20 325 1 190 298 18 0 chr15 40987955 40988012 -60392509 - L2 LINE L2 -958 2356 2299 1644 213 45 26 chr15 40988091 40988518 -60392003 - L1MB2 LINE L1 -8 6163 5729 773 148 0 8 chr15 40988664 40988786 -60391735 + FLAM_C SINE Alu 1 121 -12 22 0 0 0 chr15 40988786 40988808 -60391713 + AT_rich Low_complexity Low_complexity 1 22 0 832 199 60 12 chr15 40989079 40989245 -60391276 - AluJo SINE Alu -15 297 124 413 329 72 66 chr15 40989576 40989895 -60390626 + L2 LINE L2 2947 3267 -5 1432 135 127 4 chr15 40990277 40990521 -60390000 + MLT2C2 LTR ERVL 1 274 -190 198 103 0 0 chr15 40990530 40990559 -60389962 + (CATA)n Simple_repeat Simple_repeat 4 32 0 245 171 0 0 chr15 40990559 40990600 -60389921 + MLT2B1 LTR ERVL 480 520 0 302 0 26 0 chr15 40990812 40990850 -60389671 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2057 100 0 0 chr15 40990852 40991133 -60389388 - AluSx SINE Alu -31 281 1 237 108 0 0 chr15 40993750 40993787 -60386734 + (TAG)n Simple_repeat Simple_repeat 1 37 0 2201 110 3 0 chr15 40993917 40994207 -60386314 + AluSx SINE Alu 3 293 -19 200 309 29 0 chr15 40994290 40994358 -60386163 - MIR SINE MIR -123 139 70 439 264 138 11 chr15 40994895 40995069 -60385452 - MIR SINE MIR -5 257 62 569 39 0 13 chr15 40995147 40995224 -60385297 + (GGAA)n Simple_repeat Simple_repeat 2 77 0 2925 69 3 0 chr15 40995353 40995729 -60384792 - L1PA8 LINE L1 -3 6169 5793 1712 140 0 37 chr15 40996649 40996921 -60383600 - AluSx SINE Alu -50 262 1 4589 124 64 61 chr15 40997064 40998686 -60381835 - pTR5 LTR ERV1 -10 2428 65 313 298 65 0 chr15 40999020 40999144 -60381377 + MIR SINE MIR 22 153 -109 2507 134 48 71 chr15 40999281 40999803 -60380718 + LTR54 LTR ERV1 1 510 0 1210 176 96 58 chr15 40999831 41000144 -60380377 - MER2 DNA MER2_type -20 325 1 1793 212 53 5 chr15 41001015 41001430 -60379091 - L1MB2 LINE L1 -8 6163 5729 757 142 17 0 chr15 41001577 41001697 -60378824 + AluJb SINE Alu 2 123 -189 22 0 0 0 chr15 41001697 41001719 -60378802 + AT_rich Low_complexity Low_complexity 1 22 0 1626 164 63 7 chr15 41001993 41002279 -60378242 - AluJo SINE Alu 0 312 11 200 196 22 120 chr15 41002474 41002566 -60377955 + L2 LINE L2 3018 3100 -172 4971 151 155 1 chr15 41003111 41003995 -60376526 + LTR28 LTR ERV1 1 1020 0 202 81 27 0 chr15 41004944 41004981 -60375540 + MER5C DNA MER1_type 76 113 -211 2129 125 3 7 chr15 41004984 41005289 -60375232 - AluSx SINE Alu -8 304 1 225 293 120 0 chr15 41005331 41005406 -60375115 + MER5C DNA MER1_type 241 324 0 385 290 124 27 chr15 41005850 41006036 -60374485 - MIR SINE MIR -32 230 27 271 246 285 23 chr15 41007420 41007550 -60372971 - MER20B DNA MER1_type -595 188 25 1837 156 45 0 chr15 41007688 41007977 -60372544 - AluSx SINE Alu -10 302 1 307 206 191 64 chr15 41008484 41008625 -60371896 + L2 LINE L2 3109 3267 -5 234 326 0 32 chr15 41008760 41008855 -60371666 + MIR3 SINE MIR 15 106 -102 192 40 0 0 chr15 41010333 41010358 -60370163 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1983 47 51 4 chr15 41010358 41010606 -60369915 - AluY SINE Alu -48 263 1 240 250 61 104 chr15 41010694 41010858 -60369663 - MER5A DNA MER1_type -5 184 28 2142 105 7 7 chr15 41011017 41011313 -60369208 + AluSq SINE Alu 1 296 -17 2043 150 9 41 chr15 41011546 41011887 -60368634 - LTR8 LTR ERV1 0 691 362 1442 137 0 0 chr15 41011904 41012109 -60368412 - HERV9 LTR ERV1 -4521 3878 3674 38042 82 13 20 chr15 41012115 41017054 -60363467 + L1PA6 LINE L1 11 4902 -1252 2265 100 0 3 chr15 41017054 41017377 -60363144 + AluY SINE Alu 1 311 0 38042 82 13 20 chr15 41017377 41018622 -60361899 + L1PA6 LINE L1 4902 6154 0 18802 160 32 34 chr15 41018622 41020417 -60360104 - HERV9 LTR ERV1 -4711 3688 1892 2280 87 0 0 chr15 41020417 41020694 -60359827 + AluY SINE Alu 9 285 -26 18802 160 32 34 chr15 41020694 41022540 -60357981 - HERV9 LTR ERV1 -6507 1892 52 710 158 18 0 chr15 41022546 41022678 -60357843 - pTR5 LTR ERV1 -218 496 45 248 267 27 0 chr15 41022678 41022753 -60357768 - LTR30 LTR ERV1 -102 620 544 1086 174 25 87 chr15 41022757 41023033 -60357488 - LTR12 LTR ERV1 -440 274 16 2033 132 10 0 chr15 41023033 41023328 -60357193 + AluSx SINE Alu 13 310 -2 946 115 0 0 chr15 41023328 41023458 -60357063 - LTR8 LTR ERV1 -561 130 1 6602 155 44 10 chr15 41023458 41024272 -60356249 - HUERS-P1 LTR ERV1 0 6263 5478 1987 174 0 0 chr15 41024272 41024582 -60355939 - AluJb SINE Alu -2 310 1 6602 155 44 10 chr15 41024582 41024967 -60355554 - HUERS-P1 LTR ERV1 -785 5478 3577 18045 139 34 47 chr15 41024970 41028347 -60352174 - HUERS-P1 LTR ERV1 -2931 3332 1 4453 116 14 59 chr15 41028347 41029071 -60351450 - LTR8 LTR ERV1 0 691 1 213 65 0 0 chr15 41029341 41029372 -60351149 + (TG)n Simple_repeat Simple_repeat 1 31 0 386 103 0 17 chr15 41030308 41030366 -60350155 + U1 snRNA snRNA 5 61 -104 667 95 0 0 chr15 41030467 41030551 -60349970 + U1 snRNA snRNA 82 165 0 24 0 0 0 chr15 41030583 41030607 -60349914 + AT_rich Low_complexity Low_complexity 1 24 0 805 271 57 19 chr15 41031162 41031476 -60349045 - L2 LINE L2 -661 2653 2328 2465 114 13 84 chr15 41031477 41031942 -60348579 - MSTB1 LTR MaLR 0 432 1 7922 194 56 13 chr15 41031942 41033118 -60347403 - MSTB1-int LTR MaLR 0 1651 387 2527 49 3 16 chr15 41033118 41033425 -60347096 + AluY SINE Alu 1 303 -8 7922 194 56 13 chr15 41033425 41033830 -60346691 - MSTB1-int LTR MaLR -1264 387 1 2722 116 18 34 chr15 41033830 41034269 -60346252 - MSTB1 LTR MaLR 0 432 1 531 273 158 43 chr15 41034269 41034712 -60345809 - L2 LINE L2 -983 2331 1838 330 325 81 62 chr15 41034719 41035138 -60345383 - L2 LINE L2 0 3272 2846 1423 138 0 96 chr15 41035862 41036122 -60344399 + AluSx SINE Alu 1 235 -77 255 103 0 0 chr15 41036124 41036163 -60344358 + (GA)n Simple_repeat Simple_repeat 1 39 0 387 260 37 24 chr15 41036288 41036434 -60344087 + HAL1b LINE L1 521 1742 -701 21 57 0 0 chr15 41036665 41036700 -60343821 + AT_rich Low_complexity Low_complexity 1 35 0 800 145 0 69 chr15 41036764 41036909 -60343612 + AluJo SINE Alu 1 135 -177 30621 74 4 58 chr15 41037079 41042270 -60338251 - L1PA6 LINE L1 -1 6153 1029 716 172 23 0 chr15 41042677 41042805 -60337716 + AluJb SINE Alu 3 133 -179 747 234 0 6 chr15 41042809 41042984 -60337537 + L1M4 LINE L1 3609 3782 -2364 650 153 17 8 chr15 41043126 41043244 -60337277 + AluSg/x SINE Alu 174 292 -18 456 299 7 19 chr15 41043319 41043473 -60337048 - L1MEc LINE L1 -5866 530 379 589 193 25 0 chr15 41043479 41043598 -60336923 - L1MEc LINE L1 -6175 221 100 628 321 46 51 chr15 41044097 41044466 -60336055 - ERVL LTR ERVL -24 5740 5374 2189 107 0 20 chr15 41044466 41044765 -60335756 - AluSg SINE Alu -17 293 1 628 321 46 51 chr15 41044765 41045008 -60335513 - ERVL LTR ERVL -390 5374 5131 * 1079 245 52 10 chr15 41044998 41045304 -60335217 - ERVL LTR ERVL -1336 4428 4110 627 214 103 0 chr15 41045310 41045455 -60335066 - LTR33 LTR ERVL -357 164 5 241 229 0 33 chr15 41045733 41045794 -60334727 + L2 LINE L2 3254 3312 -1 495 189 95 61 chr15 41046112 41046179 -60334342 + MIR3 SINE MIR 17 80 -128 1052 234 83 61 chr15 41046179 41046636 -60333885 - MLT1C LTR MaLR 0 467 1 495 189 95 61 chr15 41046636 41046716 -60333805 + MIR3 SINE MIR 80 169 -39 1396 201 37 48 chr15 41048515 41048893 -60331628 - MLT1A2 LTR MaLR 0 374 1 2503 86 3 0 chr15 41049032 41049336 -60331185 + AluSg SINE Alu 1 305 -5 5076 79 20 14 chr15 41049427 41050189 -60330332 - MER4E LTR ERV1 0 766 1 1475 180 39 3 chr15 41050199 41050483 -60330038 - AluJo SINE Alu -18 294 1 3075 135 65 2 chr15 41050719 41051215 -60329306 + MER1A DNA MER1_type 1 527 0 2336 118 0 6 chr15 41051280 41051594 -60328927 - AluSx SINE Alu 0 312 1 233 296 120 9 chr15 41051836 41051944 -60328577 - MIR SINE MIR -133 129 10 202 125 42 21 chr15 41052274 41052322 -60328199 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 1108 227 84 28 chr15 41052362 41052683 -60327838 - MER2 DNA MER2_type 0 345 7 359 251 87 54 chr15 41052785 41052981 -60327540 - L1MC/D LINE L1 -327 5794 5606 267 241 86 35 chr15 41053315 41053431 -60327090 - L1ME4a LINE L1 -9 6112 5991 2123 142 0 3 chr15 41053623 41053934 -60326587 - AluSx SINE Alu -2 310 1 1729 184 14 0 chr15 41054013 41054301 -60326220 - AluJo SINE Alu -20 292 1 406 230 175 8 chr15 41054327 41054453 -60326068 - L1ME4a LINE L1 0 6121 5975 379 243 93 0 chr15 41054458 41054565 -60325956 - L1ME4a LINE L1 -435 5686 5570 335 193 72 72 chr15 41054586 41054669 -60325852 - L1ME4a LINE L1 -298 5823 5741 180 318 16 0 chr15 41055125 41055188 -60325333 + L2 LINE L2 2996 3059 -213 273 359 31 8 chr15 41055240 41055368 -60325153 - L2 LINE L2 -4 3268 3138 617 273 107 9 chr15 41055611 41055827 -60324694 + MIR SINE MIR 20 256 -6 393 357 6 20 chr15 41055925 41055954 -60324567 - MIR3 SINE MIR -22 186 158 1952 113 6 91 chr15 41055954 41056283 -60324238 - AluSx SINE Alu -11 301 1 393 357 6 20 chr15 41056283 41056422 -60324099 - MIR3 SINE MIR -50 158 20 199 204 45 0 chr15 41056912 41056956 -60323565 - MIR SINE MIR -26 236 191 659 266 90 70 chr15 41056988 41057056 -60323465 + MIR SINE MIR 1 66 -196 1485 167 46 4 chr15 41057056 41057296 -60323225 + AluJo SINE Alu 47 296 -16 659 266 90 70 chr15 41057296 41057483 -60323038 + MIR SINE MIR 66 261 -1 275 241 232 54 chr15 41057491 41057732 -60322789 + L2 LINE L2 3026 3309 -4 * 542 271 124 0 chr15 41057727 41057904 -60322617 - MIR SINE MIR -62 200 2 3112 109 43 0 chr15 41057935 41058441 -60322080 + L1MA2 LINE L1 5676 6203 -101 401 286 71 8 chr15 41059956 41060082 -60320439 - MIR3 SINE MIR -65 143 10 1848 199 76 32 chr15 41060214 41060677 -60319844 + L1ME2 LINE L1 5617 6099 -65 645 161 9 9 chr15 41060785 41060897 -60319624 + MER81 DNA DNA 1 112 -2 1088 237 128 21 chr15 41064048 41064470 -60316051 + MER113 DNA MER1_type? 55 521 0 547 221 41 0 chr15 41065944 41066066 -60314455 + L2 LINE L2 3187 3313 0 1994 163 0 3 chr15 41066329 41066635 -60313886 - AluJo SINE Alu -7 305 1 2674 46 0 0 chr15 41066637 41066941 -60313580 - AluY SINE Alu -7 304 1 329 356 56 6 chr15 41069130 41069290 -60311231 - MER91A DNA MER1_type -26 170 3 314 329 29 21 chr15 41069693 41069833 -60310688 + L3 LINE CR1 627 767 -810 2283 96 7 7 chr15 41070332 41070642 -60309879 + AluSx SINE Alu 3 312 0 204 266 165 13 chr15 41070936 41071015 -60309506 - L2 LINE L2 -18 3295 3205 2509 88 0 0 chr15 41072444 41072751 -60307770 - AluSx SINE Alu -5 307 1 688 223 4 96 chr15 41072751 41072815 -60307706 - MIR SINE MIR -10 252 184 786 174 73 17 chr15 41072815 41072993 -60307528 - MER5A DNA MER1_type 0 189 2 688 223 4 96 chr15 41072993 41073169 -60307352 - MIR SINE MIR -78 184 33 2339 113 0 22 chr15 41075193 41075550 -60304971 + AluSx SINE Alu 1 350 0 400 289 255 0 chr15 41076202 41076410 -60304111 + MIR SINE MIR 1 261 -1 273 283 114 66 chr15 41079670 41079836 -60300685 + MIR SINE MIR 31 204 -58 337 327 27 0 chr15 41085027 41085137 -60295384 - MIR SINE MIR -56 206 94 639 92 61 0 chr15 41085221 41085319 -60295202 + FLAM_C SINE Alu 17 120 -23 198 349 165 0 chr15 41086161 41086270 -60294251 - MIR SINE MIR -63 145 19 188 290 150 10 chr15 41087115 41087215 -60293306 - MIR SINE MIR -79 129 16 204 125 0 0 chr15 41087224 41087256 -60293265 + (GA)n Simple_repeat Simple_repeat 1 32 0 210 303 15 0 chr15 41088939 41089005 -60291516 + L2 LINE L2 3175 3241 -31 2237 100 0 7 chr15 41089163 41089454 -60291067 - AluSx SINE Alu -23 289 1 1542 173 61 4 chr15 41090046 41090323 -60290198 - AluJo SINE Alu -15 297 5 440 284 9 0 chr15 41090692 41090801 -60289720 - L2 LINE L2 -11 3302 3193 543 249 17 35 chr15 41091539 41091712 -60288809 - MER104 DNA Tc2 -3 177 8 394 293 137 34 chr15 41091819 41092024 -60288497 + MIR SINE MIR 19 244 -18 2008 137 0 11 chr15 41092146 41092450 -60288071 - AluSx SINE Alu 0 301 1 255 292 143 19 chr15 41092467 41092628 -60287893 + MIR3 SINE MIR 21 201 -7 1061 302 126 30 chr15 41092865 41093728 -60286793 + L2 LINE L2 1527 2472 -842 499 332 76 54 chr15 41093846 41094295 -60286226 + L2 LINE L2 2752 3209 -63 23 0 0 0 chr15 41094646 41094669 -60285852 + AT_rich Low_complexity Low_complexity 1 23 0 221 227 0 0 chr15 41096202 41096246 -60284275 + (TG)n Simple_repeat Simple_repeat 2 45 0 374 344 8 8 chr15 41099110 41099241 -60281280 - MIR3 SINE MIR -74 134 4 413 234 8 62 chr15 41099278 41099406 -60281115 + L2 LINE L2 3192 3312 -1 235 302 69 52 chr15 41099713 41099829 -60280692 + L2 LINE L2 3155 3272 0 2249 87 0 37 chr15 41104703 41105024 -60275497 + AluSp SINE Alu 1 309 -4 318 235 62 12 chr15 41105232 41105313 -60275208 - L1MC4 LINE L1 -1342 6700 6616 459 100 0 0 chr15 41105682 41105752 -60274769 + (TG)n Simple_repeat Simple_repeat 1 70 0 530 298 30 18 chr15 41106262 41106430 -60274091 - MIR3 SINE MIR -1 207 38 209 296 19 0 chr15 41107449 41107503 -60273018 - L2 LINE L2 -8 3305 3251 1085 284 28 22 chr15 41107784 41108242 -60272279 + Tigger8 DNA MER2_type 158 618 -48 289 279 0 13 chr15 41108349 41108428 -60272093 + MIR SINE MIR 185 262 0 288 0 0 0 chr15 41109393 41109425 -60271096 + (TG)n Simple_repeat Simple_repeat 2 33 0 2254 98 10 0 chr15 41110089 41110395 -60270126 + AluSp SINE Alu 5 313 0 408 88 0 0 chr15 41110396 41110453 -60270068 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 799 264 63 17 chr15 41111260 41111499 -60269022 + MIR SINE MIR 13 262 0 272 325 39 26 chr15 41112356 41112510 -60268011 + MIR SINE MIR 79 234 -28 2322 95 3 0 chr15 41113275 41113579 -60266942 + AluSx SINE Alu 1 305 -7 476 281 53 12 chr15 41114161 41114356 -60266165 - MIR3 SINE MIR -46 216 5 1074 162 83 45 chr15 41116107 41116372 -60264149 - ORSL DNA AcHobo 0 275 1 197 129 0 0 chr15 41116596 41116627 -60263894 + L2 LINE L2 3241 3271 -1 318 281 98 52 chr15 41117166 41117208 -60263313 - L1MC4 LINE L1 -2 8040 8001 1891 138 17 10 chr15 41117208 41117499 -60263022 + AluSx SINE Alu 1 293 -19 318 281 98 52 chr15 41117499 41117609 -60262912 - L1MC4 LINE L1 -41 8001 7881 250 236 45 11 chr15 41117817 41117906 -60262615 - L1MC5 LINE L1 -34 7927 7836 667 253 78 0 chr15 41118416 41118570 -60261951 - MER91A DNA MER1_type 0 196 31 451 258 70 128 chr15 41118925 41119254 -60261267 - L2 LINE L2 0 3272 2963 2388 84 3 0 chr15 41120581 41120889 -60259632 + AluSx SINE Alu 1 309 -3 477 0 0 0 chr15 41121136 41121189 -60259332 + (TG)n Simple_repeat Simple_repeat 2 54 0 1238 121 0 0 chr15 41121378 41121552 -60258969 + AluSg/x SINE Alu 133 306 -6 21 0 0 0 chr15 41122237 41122258 -60258263 + AT_rich Low_complexity Low_complexity 1 21 0 368 351 26 16 chr15 41122760 41122926 -60257595 - L2 LINE L2 0 3313 3143 2124 121 0 16 chr15 41122926 41123233 -60257288 + AluSx SINE Alu 1 302 -10 368 351 26 16 chr15 41123233 41123257 -60257264 - L2 LINE L2 -170 3143 3121 2351 87 0 0 chr15 41124075 41124374 -60256147 - AluSg SINE Alu -11 299 1 2038 151 3 0 chr15 41125181 41125492 -60255029 + AluSx SINE Alu 1 312 0 225 302 103 9 chr15 41125926 41126042 -60254479 + L3b LINE CR1 1111 1237 -346 2140 96 30 3 chr15 41126071 41126372 -60254149 + AluSx SINE Alu 1 309 -3 579 305 180 6 chr15 41127380 41127516 -60253005 - L2 LINE L2 -16 3297 3186 2040 120 10 17 chr15 41127516 41127816 -60252705 + AluSx SINE Alu 1 298 -14 579 305 180 6 chr15 41127816 41128040 -60252481 - L2 LINE L2 -127 3186 2874 388 331 37 37 chr15 41128074 41128319 -60252202 - L2 LINE L2 -550 2764 2520 2261 87 6 22 chr15 41128775 41129087 -60251434 + AluSc SINE Alu 1 307 -2 284 118 0 20 chr15 41129087 41129138 -60251383 + (GGGA)n Simple_repeat Simple_repeat 2 51 0 1138 178 17 26 chr15 41132112 41132342 -60248179 - AluJo SINE Alu -9 303 76 272 197 182 0 chr15 41133673 41133739 -60246782 + MIR3 SINE MIR 93 170 -38 2364 45 10 3 chr15 41133790 41134081 -60246440 - AluSp SINE Alu -19 294 2 41 66 0 0 chr15 41134739 41134815 -60245706 + GC_rich Low_complexity Low_complexity 1 76 0 336 304 32 8 chr15 41137824 41137949 -60242572 + MIR SINE MIR 20 147 -115 523 294 71 5 chr15 41138109 41138284 -60242237 - MIR3 SINE MIR -7 201 12 2175 123 0 3 chr15 41138284 41138593 -60241928 - AluSq SINE Alu -1 312 5 454 205 224 32 chr15 41139148 41139304 -60241217 - MIR SINE MIR 0 262 77 289 273 52 0 chr15 41139339 41139416 -60241105 + L2 LINE L2 3138 3218 -54 252 168 42 76 chr15 41141382 41141501 -60239020 + (CAGAGA)n Simple_repeat Simple_repeat 3 117 0 2307 96 3 6 chr15 41143452 41143765 -60236756 - AluSx SINE Alu 0 312 1 2345 84 0 3 chr15 41146168 41146478 -60234043 - AluSc SINE Alu 0 309 1 465 244 59 0 chr15 41146574 41146709 -60233812 - LTR33A LTR ERVL -6 517 375 446 246 85 15 chr15 41146813 41146943 -60233578 - MIR SINE MIR -78 184 46 233 209 179 0 chr15 41147798 41147865 -60232656 + L2 LINE L2 3220 3298 -15 399 282 132 48 chr15 41148249 41148476 -60232045 + L2 LINE L2 2946 3191 -81 272 257 43 0 chr15 41149181 41149251 -60231270 + L2 LINE L2 3225 3297 -16 194 0 39 0 chr15 41149491 41149517 -60231004 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 507 237 46 53 chr15 41149962 41150114 -60230407 + MIR SINE MIR 106 256 -6 275 337 32 0 chr15 41150140 41150235 -60230286 - MIR SINE MIR -83 125 28 460 191 106 14 chr15 41150248 41150389 -60230132 - MER103 DNA DNA -10 156 3 249 264 14 28 chr15 41150759 41150831 -60229690 - L2 LINE L2 -2 3311 3241 709 303 10 15 chr15 41150843 41151041 -60229480 + MIR SINE MIR 65 261 -1 333 294 101 0 chr15 41153493 41153602 -60226919 - L2 LINE L2 -7 3265 3146 222 260 0 0 chr15 41154608 41154658 -60225863 + GA-rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr15 41155142 41155164 -60225357 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr15 41155323 41155351 -60225170 + GC_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr15 41155406 41155427 -60225094 + GC_rich Low_complexity Low_complexity 1 21 0 32 57 0 0 chr15 41155481 41155534 -60224987 + GC_rich Low_complexity Low_complexity 1 53 0 231 88 0 0 chr15 41155638 41155672 -60224849 + (CGGGGG)n Simple_repeat Simple_repeat 2 35 0 2362 71 0 3 chr15 41156556 41156867 -60223654 + AluY SINE Alu 1 310 -1 830 203 0 51 chr15 41157387 41157564 -60222957 - FRAM SINE Alu -1 175 8 312 292 8 17 chr15 41157601 41157684 -60222837 + CT-rich Low_complexity Low_complexity 2 85 -35 2311 100 0 0 chr15 41157684 41157995 -60222526 - AluSq SINE Alu -2 311 1 312 292 8 17 chr15 41157995 41158031 -60222490 + CT-rich Low_complexity Low_complexity 85 120 0 207 345 0 0 chr15 41158630 41158688 -60221833 + MIR SINE MIR 87 144 -118 308 102 17 0 chr15 41158913 41158972 -60221549 + L1PA16 LINE L1 6107 6166 0 1764 124 3 109 chr15 41159252 41159437 -60221084 - AluJo SINE Alu -14 288 150 1740 170 14 0 chr15 41159437 41159726 -60220795 + AluSx SINE Alu 1 293 -19 1764 124 3 109 chr15 41159726 41159862 -60220659 - AluJo SINE Alu -152 150 1 630 259 80 24 chr15 41159877 41160089 -60220432 - MIR SINE MIR 0 262 39 2132 104 14 0 chr15 41160881 41161178 -60219343 + AluSx SINE Alu 1 301 -11 381 234 0 11 chr15 41161181 41161275 -60219246 - Charlie8 DNA MER1_type -2280 137 45 403 143 29 14 chr15 41161617 41161687 -60218834 + MER66A LTR ERV1 280 350 -128 23 0 0 0 chr15 41161687 41161710 -60218811 + AT_rich Low_complexity Low_complexity 1 23 0 219 324 80 6 chr15 41161720 41161896 -60218625 - L2 LINE L2 -1241 2073 1885 328 305 30 8 chr15 41161904 41162035 -60218486 + L1ME LINE L1 5568 5701 -420 1678 167 3 10 chr15 41162144 41162438 -60218083 + AluJb SINE Alu 1 292 -20 777 210 19 0 chr15 41162462 41162624 -60217897 + L1MC4 LINE L1 6784 6948 -1094 2221 104 0 0 chr15 41162624 41162931 -60217590 + AluSx SINE Alu 1 307 -5 22 65 0 0 chr15 41162957 41162988 -60217533 + AT_rich Low_complexity Low_complexity 1 31 0 39 24 0 0 chr15 41163003 41163044 -60217477 + AT_rich Low_complexity Low_complexity 1 41 0 955 179 0 0 chr15 41163187 41163388 -60217133 + AluSp SINE Alu 141 313 0 2573 73 0 3 chr15 41163602 41163932 -60216589 + MER41A LTR ERV1 1 329 -225 936 115 0 7 chr15 41163933 41164072 -60216449 + AluSq/x SINE Alu 2 139 -174 1852 79 4 0 chr15 41164117 41164357 -60216164 + MER41A LTR ERV1 314 554 0 412 324 29 22 chr15 41164772 41164911 -60215610 + MIR SINE MIR 1 140 -122 322 111 0 0 chr15 41164914 41164959 -60215562 + MER4D LTR ERV1 782 826 -77 1076 252 4 46 chr15 41164989 41165251 -60215270 - MIR SINE MIR 0 262 12 244 316 13 0 chr15 41165249 41165325 -60215196 + MIR SINE MIR 156 232 -30 * 2019 118 3 19 chr15 41165364 41165539 -60214982 - AluSx SINE Alu -3 309 140 2127 116 0 0 chr15 41165539 41165840 -60214681 - AluSg SINE Alu -9 301 1 2019 118 3 19 chr15 41165840 41165978 -60214543 - AluSx SINE Alu -172 140 1 803 103 7 97 chr15 41166187 41166332 -60214189 + FLAM_C SINE Alu 1 132 -1 2483 194 88 11 chr15 41166675 41167200 -60213321 - MLT1F1 LTR MaLR -2 565 1 2369 52 0 0 chr15 41167906 41168197 -60212324 + AluY SINE Alu 1 291 -20 1941 143 0 13 chr15 41168448 41168584 -60211937 + AluSx SINE Alu 1 137 -175 2105 98 0 3 chr15 41168584 41168913 -60211608 + AluSq SINE Alu 1 313 0 1941 143 0 13 chr15 41168913 41169083 -60211438 + AluSx SINE Alu 137 303 -9 1840 142 0 19 chr15 41169174 41169483 -60211038 + AluJb SINE Alu 1 303 -9 543 184 0 18 chr15 41169506 41169615 -60210906 - AluJo SINE Alu -1 311 205 786 183 0 0 chr15 41169628 41169754 -60210767 - AluJo SINE Alu -186 126 1 3361 148 11 2 chr15 41169806 41170334 -60210187 + Tigger1 DNA MER2_type 2 534 -1884 398 287 20 13 chr15 41170337 41170493 -60210028 + AluJb SINE Alu 140 254 -48 213 77 77 19 chr15 41170507 41170559 -60209962 + GA-rich Low_complexity Low_complexity 3 57 0 377 179 35 41 chr15 41170736 41170881 -60209640 + GA-rich Low_complexity Low_complexity 2 145 0 364 192 13 26 chr15 41170881 41170911 -60209610 + Tigger1 DNA MER2_type 521 550 -1868 1947 97 12 68 chr15 41170911 41171232 -60209289 - AluSx SINE Alu -8 304 2 364 192 13 26 chr15 41171232 41171279 -60209242 + Tigger1 DNA MER2_type 550 597 -1821 353 127 0 20 chr15 41171357 41171429 -60209092 + AluJo SINE Alu 82 136 -166 2816 118 29 0 chr15 41171446 41171863 -60208658 + Tigger1 DNA MER2_type 799 1227 -1191 2074 118 3 6 chr15 41171864 41172178 -60208343 + AluSp SINE Alu 1 313 0 4877 102 35 19 chr15 41172178 41172895 -60207626 + Tigger1 DNA MER2_type 1471 2202 -216 2216 81 3 0 chr15 41172895 41173190 -60207331 - AluSp SINE Alu -17 296 1 4877 102 35 19 chr15 41173190 41173216 -60207305 + Tigger1 DNA MER2_type 2202 2226 -192 681 179 8 0 chr15 41173216 41173339 -60207182 - FRAM SINE Alu -7 169 46 901 134 123 6 chr15 41173386 41173557 -60206964 + Tigger1 DNA MER2_type 2228 2418 0 27 0 0 0 chr15 41174033 41174060 -60206461 + GC_rich Low_complexity Low_complexity 1 27 0 337 333 7 28 chr15 41175351 41175492 -60205029 - MIR3 SINE MIR -6 202 65 551 291 194 47 chr15 41175921 41176053 -60204468 + L2 LINE L2 2825 2936 -377 376 209 102 94 chr15 41176053 41176307 -60204214 + MER112 DNA MER1_type 1 256 0 551 291 194 47 chr15 41176307 41176384 -60204137 + L2 LINE L2 2936 3000 -313 2182 85 0 23 chr15 41176384 41176730 -60203791 + AluSx SINE Alu 1 312 0 551 291 194 47 chr15 41176730 41176942 -60203579 + L2 LINE L2 3000 3309 -4 180 195 0 49 chr15 41177040 41177081 -60203440 - MIR SINE MIR -147 115 77 1652 119 19 8 chr15 41177471 41177732 -60202789 + AluSx SINE Alu 48 311 -1 1331 103 210 60 chr15 41177777 41178029 -60202492 + AluSx SINE Alu 1 290 -12 1451 177 34 10 chr15 41178115 41178409 -60202112 + AluJb SINE Alu 1 301 -11 662 275 129 66 chr15 41178511 41178995 -60201526 - L2 LINE L2 -18 3295 2757 2371 74 0 0 chr15 41178995 41179306 -60201215 - AluY SINE Alu 0 311 1 662 275 129 66 chr15 41179306 41179400 -60201121 - L2 LINE L2 -556 2757 2670 1021 168 9 35 chr15 41179401 41179633 -60200888 + AluSp SINE Alu 69 294 -19 27 0 0 0 chr15 41179834 41179861 -60200660 + AT_rich Low_complexity Low_complexity 1 27 0 429 207 107 144 chr15 41180301 41180379 -60200142 + HAL1 LINE L1 967 1046 -1461 1546 172 0 53 chr15 41180379 41180699 -60199822 + AluJb SINE Alu 5 307 -5 429 207 107 144 chr15 41180699 41180752 -60199769 + HAL1 LINE L1 1046 1099 -1408 2152 78 3 0 chr15 41180752 41181067 -60199454 - AluY SINE Alu 0 316 1 429 207 107 144 chr15 41181067 41181112 -60199409 + HAL1 LINE L1 1099 1144 -1363 777 158 0 43 chr15 41181112 41181251 -60199270 + AluJo/FLAM SINE Alu 1 133 -169 1441 189 7 30 chr15 41181253 41181549 -60198972 + AluJo SINE Alu 1 289 -23 429 207 107 144 chr15 41181549 41181625 -60198896 + HAL1 LINE L1 1145 1222 -1285 2344 92 0 0 chr15 41181625 41181929 -60198592 + AluSx SINE Alu 1 304 -8 429 207 107 144 chr15 41181929 41182060 -60198461 + HAL1 LINE L1 1222 1338 -1169 2118 92 6 54 chr15 41182060 41182376 -60198145 - AluSp SINE Alu -12 301 1 429 207 107 144 chr15 41182376 41182463 -60198058 + HAL1 LINE L1 1338 1427 -1080 1754 239 59 32 chr15 41182472 41182966 -60197555 - L1M4 LINE L1 -6035 507 1 1180 163 0 48 chr15 41183011 41183238 -60197283 + AluJo SINE Alu 87 302 -10 933 94 0 8 chr15 41183294 41183422 -60197099 - AluJb SINE Alu -185 127 1 743 230 0 30 chr15 41183425 41183590 -60196931 - FRAM SINE Alu -3 163 4 667 133 19 0 chr15 41183597 41183702 -60196819 - MER3 DNA MER1_type -97 112 6 989 189 0 63 chr15 41184020 41184210 -60196311 + MER5A DNA MER1_type 1 178 -11 1856 151 3 7 chr15 41184657 41184962 -60195559 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr15 41185317 41185339 -60195182 + GC_rich Low_complexity Low_complexity 1 22 0 1919 89 0 0 chr15 41185805 41186053 -60194468 + AluSx SINE Alu 56 303 -9 393 119 0 0 chr15 41187264 41187323 -60193198 - Alu SINE Alu -1 301 243 395 200 0 0 chr15 41187362 41187445 -60193076 - AluS SINE Alu -2 299 232 287 150 83 17 chr15 41187430 41187471 -60193050 - AluJb SINE Alu -29 273 225 * 1474 168 3 49 chr15 41187471 41187757 -60192764 - AluJb SINE Alu -39 273 1 287 150 83 17 chr15 41187757 41187775 -60192746 - AluJb SINE Alu -77 225 210 2101 111 3 16 chr15 41187980 41188287 -60192234 + AluSx SINE Alu 1 303 -9 21 36 0 0 chr15 41188374 41188402 -60192119 + AT_rich Low_complexity Low_complexity 1 28 0 446 197 26 26 chr15 41189429 41189546 -60190975 + FLAM_C SINE Alu 11 127 -16 229 307 0 18 chr15 41189619 41189733 -60190788 + HAL1 LINE L1 823 934 -1573 1973 135 26 0 chr15 41189753 41190056 -60190465 + AluSx SINE Alu 1 311 -1 1972 110 0 0 chr15 41190176 41190501 -60190020 - AluSg SINE Alu 0 325 1 819 171 19 6 chr15 41190550 41190708 -60189813 + L1MB7 LINE L1 6006 6165 -19 467 265 113 74 chr15 41191264 41191308 -60189213 - L1MC4a LINE L1 -1635 6173 6132 1556 144 0 113 chr15 41191308 41191654 -60188867 - AluJb SINE Alu -5 307 1 467 265 113 74 chr15 41191654 41191945 -60188576 - L1MC4a LINE L1 -1676 6132 5825 2175 115 0 6 chr15 41192288 41192601 -60187920 - AluSq SINE Alu 0 313 3 930 270 13 13 chr15 41192657 41192883 -60187638 + MIR SINE MIR 13 238 -24 2035 106 3 32 chr15 41193570 41193908 -60186613 - AluSp SINE Alu 0 313 1 2107 95 3 35 chr15 41193910 41194227 -60186294 - AluSg SINE Alu -1 309 3 1438 211 3 0 chr15 41194559 41194853 -60185668 - AluJo SINE Alu -17 295 1 1776 158 14 0 chr15 41194886 41195177 -60185344 + AluJo SINE Alu 3 297 -15 2065 93 58 0 chr15 41195181 41195472 -60185049 + AluSp SINE Alu 1 308 -5 1653 166 0 14 chr15 41195766 41196061 -60184460 + AluJo SINE Alu 6 296 -16 2541 48 0 3 chr15 41196247 41196540 -60183981 - AluY SINE Alu -19 292 1 267 258 0 34 chr15 41196544 41196633 -60183888 - L1MC5 LINE L1 -179 7782 7697 326 128 0 0 chr15 41196648 41196695 -60183826 + Alu SINE Alu 1 47 -261 1358 181 11 11 chr15 41197020 41197301 -60183220 - AluY SINE Alu -20 291 11 2256 98 0 3 chr15 41197366 41197662 -60182859 + AluSq SINE Alu 16 310 -3 435 38 0 0 chr15 41197671 41197724 -60182797 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 289 271 88 53 chr15 41197923 41198093 -60182428 + MIR SINE MIR 81 256 -6 2122 107 38 3 chr15 41198963 41199253 -60181268 + AluY SINE Alu 1 300 -11 718 144 168 0 chr15 41199882 41200007 -60180514 - MER46A DNA MER2_type -90 146 1 21 36 0 0 chr15 41200484 41200512 -60180009 + AT_rich Low_complexity Low_complexity 1 28 0 2082 104 0 7 chr15 41200965 41201235 -60179286 + AluSx SINE Alu 1 268 -44 195 42 0 0 chr15 41201237 41201261 -60179260 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1675 173 58 0 chr15 41201296 41201450 -60179071 - AluJb SINE Alu -18 294 150 347 0 0 23 chr15 41201450 41201494 -60179027 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 1675 173 58 0 chr15 41201494 41201617 -60178904 - AluJb SINE Alu -162 150 1 476 155 0 36 chr15 41201687 41201771 -60178750 + FLAM_A SINE Alu 44 124 -18 536 155 41 0 chr15 41202808 41202905 -60177616 + MER53 DNA DNA 85 185 -4 703 197 15 0 chr15 41202912 41203044 -60177477 + MER94 DNA DNA 1 134 0 21 36 0 0 chr15 41203065 41203093 -60177428 + AT_rich Low_complexity Low_complexity 1 28 0 1486 184 54 4 chr15 41203170 41203447 -60177074 - AluJo SINE Alu -14 298 8 25 0 0 0 chr15 41203450 41203475 -60177046 + AT_rich Low_complexity Low_complexity 1 25 0 2139 109 0 11 chr15 41203618 41203928 -60176593 - AluSx SINE Alu 0 307 1 2275 103 0 3 chr15 41204484 41204784 -60175737 - AluSg SINE Alu -10 300 2 2066 104 0 0 chr15 41205081 41205341 -60175180 - AluSq SINE Alu -53 260 1 555 238 216 14 chr15 41205426 41205796 -60174725 - L1MC4a LINE L1 -1675 6133 5689 596 280 102 88 chr15 41205988 41206420 -60174101 - L1MC4a LINE L1 -1979 5829 5392 1541 127 33 123 chr15 41206448 41206643 -60173878 - AluJb SINE Alu -5 307 153 713 125 0 0 chr15 41206643 41206747 -60173774 + U13 snRNA snRNA 1 104 0 1541 127 33 123 chr15 41206747 41206883 -60173638 - AluJb SINE Alu -159 153 6 1086 150 6 23 chr15 41207141 41207314 -60173207 + AluJb SINE Alu 133 302 -10 1684 189 10 0 chr15 41207951 41208248 -60172273 + AluJo SINE Alu 10 309 -3 905 257 9 14 chr15 41208280 41208502 -60172019 - MER58A DNA MER1_type -3 221 1 1498 44 6 0 chr15 41208551 41208732 -60171789 - L1PA4 LINE L1 -3 6152 5971 1064 267 139 9 chr15 41208762 41209200 -60171321 + L2 LINE L2 2819 3313 0 2037 131 0 0 chr15 41209730 41210030 -60170491 - AluSx SINE Alu 0 310 11 407 267 67 61 chr15 41210080 41210245 -60170276 + MIR3 SINE MIR 16 181 -27 436 163 151 0 chr15 41210245 41210331 -60170190 + AluJ/FLAM SINE Alu 1 99 -213 449 114 0 11 chr15 41210331 41210419 -60170102 + (CA)n Simple_repeat Simple_repeat 1 87 0 307 261 17 34 chr15 41211036 41211142 -60169379 - MIR SINE MIR -62 146 45 182 118 29 0 chr15 41211274 41211308 -60169213 + T-rich Low_complexity Low_complexity 4 38 0 2308 107 0 0 chr15 41212013 41212304 -60168217 + AluSx SINE Alu 6 296 -16 2273 114 0 3 chr15 41212312 41212619 -60167902 + AluSq SINE Alu 1 306 -7 1964 128 27 7 chr15 41214442 41214740 -60165781 - AluSx SINE Alu -8 304 1 1496 203 30 3 chr15 41215247 41215543 -60164978 + AluJb SINE Alu 1 304 -8 1909 152 10 3 chr15 41215899 41216195 -60164326 - AluJb SINE Alu -14 298 1 927 103 0 22 chr15 41216255 41216391 -60164130 - FLAM_C SINE Alu 0 133 1 189 0 0 0 chr15 41218467 41218488 -60162033 + (TA)n Simple_repeat Simple_repeat 2 22 0 1138 174 181 18 chr15 41218908 41218993 -60161528 + MER58B DNA MER1_type 14 84 -2336 1843 153 7 33 chr15 41218993 41219293 -60161228 + AluJb SINE Alu 3 294 -18 1138 174 181 18 chr15 41219293 41219489 -60161032 + MER58B DNA MER1_type 84 341 0 2178 108 17 17 chr15 41219515 41219812 -60160709 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr15 41220248 41220278 -60160243 + AT_rich Low_complexity Low_complexity 1 30 0 1535 151 19 22 chr15 41220304 41220575 -60159946 + AluJb SINE Alu 21 290 -22 787 44 83 0 chr15 41220590 41220820 -60159701 + (TA)n Simple_repeat Simple_repeat 1 249 0 1702 158 81 0 chr15 41222009 41222281 -60158240 + AluJb SINE Alu 6 299 -13 2162 93 0 45 chr15 41222341 41222652 -60157869 + AluSx SINE Alu 1 297 -15 308 179 30 0 chr15 41223241 41223308 -60157213 + MIR SINE MIR 161 229 -33 714 76 0 0 chr15 41223442 41223534 -60156987 - MER46A DNA MER2_type 0 236 145 1137 182 0 11 chr15 41223547 41223728 -60156793 - AluSx SINE Alu -131 181 3 2514 46 0 10 chr15 41224215 41224517 -60156004 - AluY SINE Alu -12 299 1 1811 134 7 50 chr15 41224793 41225091 -60155430 - AluJb SINE Alu -15 297 13 825 168 0 0 chr15 41225207 41225338 -60155183 + FLAM_C SINE Alu 2 132 -1 319 273 81 0 chr15 41225347 41225446 -60155075 + MIR SINE MIR 38 144 -64 * 739 241 79 29 chr15 41225441 41225682 -60154839 - MIR SINE MIR 0 262 10 286 266 49 42 chr15 41226019 41226162 -60154359 + MIR SINE MIR 8 151 -111 2310 186 29 77 chr15 41226167 41226814 -60153707 - LTR6A LTR ERV1 0 564 1 2256 113 3 3 chr15 41226881 41227192 -60153329 + AluSq SINE Alu 1 311 -2 2548 134 23 59 chr15 41227348 41227389 -60153132 + MER4E LTR ERV1 1 42 -737 1923 146 23 23 chr15 41227389 41227732 -60152789 - MER61A LTR ERV1 0 343 1 2548 134 23 59 chr15 41227732 41227765 -60152756 + MER4E LTR ERV1 42 75 -704 2081 137 14 0 chr15 41227765 41228058 -60152463 - AluSx SINE Alu -15 297 1 2548 134 23 59 chr15 41228058 41228409 -60152112 + MER4E LTR ERV1 75 577 -202 2473 86 0 13 chr15 41228409 41228722 -60151799 - AluSx SINE Alu -3 309 1 2548 134 23 59 chr15 41228722 41228918 -60151603 + MER4E LTR ERV1 577 779 0 266 280 118 21 chr15 41228992 41229085 -60151436 + MIR SINE MIR 43 144 -118 410 196 76 0 chr15 41229085 41229177 -60151344 - LTR36 LTR ERV1 0 611 513 1736 149 12 28 chr15 41229177 41229519 -60151002 - MER4A LTR ERV1 0 664 270 466 120 13 13 chr15 41229521 41229596 -60150925 - MER4A LTR ERV1 -589 75 1 * 917 186 135 103 chr15 41229596 41230041 -60150480 - LTR36 LTR ERV1 -94 517 58 407 176 120 19 chr15 41230064 41230172 -60150349 + MIR SINE MIR 140 258 -4 354 322 25 0 chr15 41231000 41231121 -60149400 + L2 LINE L2 3147 3270 -2 407 108 0 68 chr15 41231205 41231279 -60149242 - MER3 DNA MER1_type 0 209 141 1781 221 15 102 chr15 41231280 41231867 -60148654 + L1ME2 LINE L1 5611 6146 -18 831 194 6 34 chr15 41231867 41232042 -60148479 - MER3 DNA MER1_type -86 123 1 1279 119 36 55 chr15 41232388 41232454 -60148067 - MSTA LTR MaLR -2 426 360 2148 115 13 0 chr15 41232454 41232631 -60147890 - AluSq SINE Alu -5 308 124 192 40 0 0 chr15 41232631 41232656 -60147865 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2148 115 13 0 chr15 41232656 41232782 -60147739 - AluSq SINE Alu -189 124 1 1279 119 36 55 chr15 41232782 41232934 -60147587 - MSTA LTR MaLR -68 360 212 * 1738 214 29 47 chr15 41232917 41233361 -60147160 - MLT2B3 LTR ERVL -118 436 1 2368 99 3 0 chr15 41233373 41233676 -60146845 - AluSp SINE Alu -9 304 1 199 315 19 19 chr15 41233694 41233802 -60146719 + L2 LINE L2 1851 1958 -1356 230 98 49 0 chr15 41233805 41233846 -60146675 + T-rich Low_complexity Low_complexity 3 45 0 2518 89 0 0 chr15 41233849 41234162 -60146359 - AluSp SINE Alu 0 313 1 189 275 174 0 chr15 41234543 41234652 -60145869 + L2 LINE L2 2029 2156 -1158 548 146 0 0 chr15 41234983 41235065 -60145456 + AluS SINE Alu 2 83 -230 225 69 0 0 chr15 41235065 41235094 -60145427 + Alu SINE Alu 52 80 -223 1011 114 17 0 chr15 41235094 41235269 -60145252 + (ATGGTG)n Simple_repeat Simple_repeat 1 178 0 186 43 0 0 chr15 41235273 41235296 -60145225 + (TGG)n Simple_repeat Simple_repeat 1 23 0 1037 99 19 8 chr15 41235442 41235705 -60144816 + (TGG)n Simple_repeat Simple_repeat 1 266 0 1518 185 33 23 chr15 41236384 41236687 -60143834 + AluJo SINE Alu 1 306 -6 274 121 182 0 chr15 41236755 41236821 -60143700 + L2 LINE L2 3221 3298 -15 257 257 50 20 chr15 41236825 41236926 -60143595 - MER103 DNA DNA -62 104 1 22 35 0 0 chr15 41237111 41237140 -60143381 + AT_rich Low_complexity Low_complexity 1 29 0 2107 144 0 10 chr15 41237140 41237453 -60143068 + AluSx SINE Alu 1 310 -2 374 112 0 184 chr15 41237548 41237646 -60142875 - MADE1 DNA Mariner 0 80 1 293 306 63 89 chr15 41237653 41238003 -60142518 + L1ME LINE L1 5321 5661 -460 259 89 22 0 chr15 41238007 41238052 -60142469 - MADE1 DNA Mariner -34 46 1 28 0 0 0 chr15 41238338 41238366 -60142155 + AT_rich Low_complexity Low_complexity 1 28 0 1483 222 99 41 chr15 41238401 41238938 -60141583 - L1ME3A LINE L1 -190 5980 5413 304 171 39 77 chr15 41239082 41239257 -60141264 - L1ME3A LINE L1 -779 5399 5236 1390 241 64 29 chr15 41240946 41241075 -60139446 - MER63B DNA MER1_type -627 435 312 2149 116 10 0 chr15 41241075 41241376 -60139145 - AluSx SINE Alu -8 304 1 1390 241 64 29 chr15 41241376 41241666 -60138855 - MER63B DNA MER1_type -750 312 1 831 173 8 0 chr15 41242620 41242753 -60137768 - AluJo SINE Alu -178 134 1 919 141 0 0 chr15 41243339 41243474 -60137047 + FLAM_C SINE Alu 1 135 -8 828 144 0 0 chr15 41243477 41243602 -60136919 - AluSg/x SINE Alu -6 304 180 8825 50 6 15 chr15 41243602 41244673 -60135848 + MER11C LTR ERVK 1 1061 -10 1469 114 45 0 chr15 41244673 41244875 -60135646 - AluSx SINE Alu -101 211 1 28 0 0 0 chr15 41244882 41244910 -60135611 + AT_rich Low_complexity Low_complexity 1 28 0 295 289 91 25 chr15 41245032 41245062 -60135459 - L2 LINE L2 -8 3264 3237 2207 123 18 6 chr15 41245062 41245395 -60135126 - MER1B DNA MER1_type 0 337 1 295 289 91 25 chr15 41245395 41245485 -60135036 - L2 LINE L2 -35 3237 3136 285 249 33 58 chr15 41245616 41245802 -60134719 + L2 LINE L2 2971 3269 -3 23 33 0 0 chr15 41245839 41245869 -60134652 + AT_rich Low_complexity Low_complexity 1 30 0 296 280 20 0 chr15 41246552 41246652 -60133869 - MIR3 SINE MIR -41 167 66 213 259 35 0 chr15 41247587 41247645 -60132876 - L2 LINE L2 0 3272 3213 494 254 86 30 chr15 41247752 41247949 -60132572 - MIR SINE MIR -21 241 34 274 200 14 14 chr15 41247995 41248065 -60132456 - L2 LINE L2 -211 3061 2992 409 226 9 28 chr15 41248134 41248240 -60132281 - MER5B DNA MER1_type -1 177 74 21 57 0 0 chr15 41249117 41249152 -60131369 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr15 41249180 41249209 -60131312 + AT_rich Low_complexity Low_complexity 1 29 0 2347 115 0 0 chr15 41249243 41249580 -60130941 + AluSx SINE Alu 1 337 0 284 343 28 17 chr15 41249631 41249809 -60130712 - L1MC/D LINE L1 -2223 5585 5406 1827 157 0 14 chr15 41249860 41250154 -60130367 + AluJo SINE Alu 1 290 -22 319 62 0 97 chr15 41250155 41250268 -60130253 + (GGAA)n Simple_repeat Simple_repeat 1 102 0 332 250 81 16 chr15 41250451 41250575 -60129946 + L2 LINE L2 3171 3302 -11 470 66 16 0 chr15 41250575 41250636 -60129885 + U7 snRNA snRNA 1 62 -1 189 74 0 0 chr15 41250668 41250695 -60129826 + (CATA)n Simple_repeat Simple_repeat 2 28 0 421 216 55 106 chr15 41252463 41252530 -60127991 - MER5A DNA MER1_type 0 189 120 2478 85 0 0 chr15 41252530 41252835 -60127686 + AluY SINE Alu 1 305 -6 421 216 55 106 chr15 41252835 41252966 -60127555 - MER5A DNA MER1_type -69 120 1 229 299 11 11 chr15 41253135 41253222 -60127299 - MIR SINE MIR -136 126 40 2139 111 0 13 chr15 41253641 41253939 -60126582 + AluJo SINE Alu 4 297 -15 22 0 0 0 chr15 41253945 41253967 -60126554 + AT_rich Low_complexity Low_complexity 1 22 0 743 227 17 6 chr15 41253967 41254143 -60126378 + MER5A DNA MER1_type 12 189 0 2250 104 23 3 chr15 41254543 41254850 -60125671 - AluSq SINE Alu 0 313 1 4195 65 69 24 chr15 41254931 41255513 -60125008 + LTR66 LTR ERVL 1 608 -2 317 304 96 0 chr15 41255662 41255797 -60124724 + L1ME2 LINE L1 6014 6161 -3 57 66 0 0 chr15 41255800 41255906 -60124615 + AT_rich Low_complexity Low_complexity 1 106 0 2316 109 0 0 chr15 41256220 41256522 -60123999 - AluSx SINE Alu -10 302 1 2235 106 0 16 chr15 41256525 41256828 -60123693 - AluSq SINE Alu -15 298 1 1236 197 119 64 chr15 41257186 41257607 -60122914 + LTR56 LTR ERV1 2 445 0 1856 138 24 10 chr15 41257735 41258031 -60122490 - AluSx SINE Alu -12 300 1 1660 155 19 4 chr15 41258358 41258622 -60121899 - AluJb SINE Alu -23 289 22 2204 129 10 0 chr15 41258761 41259064 -60121457 - AluSx SINE Alu -6 306 1 1351 97 27 0 chr15 41259075 41259261 -60121260 - AluSc SINE Alu -5 304 114 811 82 231 0 chr15 41259278 41259425 -60121096 - MER30 DNA MER1_type -49 181 1 1433 162 143 4 chr15 41259569 41259834 -60120687 + AluJb SINE Alu 1 302 0 203 265 20 0 chr15 41260119 41260168 -60120353 + L2 LINE L2 3206 3255 -17 462 201 138 135 chr15 41260346 41260625 -60119896 + L1MC4 LINE L1 7634 7916 -126 1941 138 10 10 chr15 41260625 41260923 -60119598 - AluJb SINE Alu -14 298 1 462 201 138 135 chr15 41260923 41261050 -60119471 + L1MC4 LINE L1 7916 8041 -1 1456 156 136 66 chr15 41261507 41262077 -60118444 + MER39 LTR ERV1 2 697 -10 1572 123 31 50 chr15 41262088 41262349 -60118172 + AluSx SINE Alu 50 305 -7 2731 149 47 24 chr15 41262358 41262894 -60117627 + L1MB7 LINE L1 5637 6184 0 2564 57 3 0 chr15 41263099 41263395 -60117126 - AluY SINE Alu -14 297 1 2021 142 7 0 chr15 41264414 41264703 -60115818 - AluSx SINE Alu -21 291 1 25 0 0 0 chr15 41265590 41265615 -60114906 + AT_rich Low_complexity Low_complexity 1 25 0 1512 157 77 0 chr15 41266850 41267137 -60113384 + AluJo SINE Alu 1 307 0 211 204 0 0 chr15 41267354 41267408 -60113113 + A-rich Low_complexity Low_complexity 1 54 0 419 294 119 46 chr15 41267907 41268125 -60112396 + MIR SINE MIR 28 261 -1 1997 148 3 0 chr15 41268139 41268442 -60112079 - AluSx SINE Alu -8 304 1 219 250 19 0 chr15 41268726 41268778 -60111743 + GA-rich Low_complexity Low_complexity 2 54 0 334 236 29 50 chr15 41269108 41269248 -60111273 + L1MC5 LINE L1 7552 7688 -273 1875 85 0 4 chr15 41269304 41269539 -60110982 - AluSc SINE Alu -75 234 1 1075 159 0 6 chr15 41269539 41269702 -60110819 + AluJo SINE Alu 117 278 -34 2132 104 0 17 chr15 41269702 41270015 -60110506 - AluSx SINE Alu 0 308 1 1202 157 57 40 chr15 41270069 41270317 -60110204 - Tigger2a DNA MER2_type 0 444 193 1163 127 0 0 chr15 41270320 41270478 -60110043 - AluSg/x SINE Alu -19 293 136 924 110 41 164 chr15 41270478 41270639 -60109882 - Tigger2a DNA MER2_type -2516 192 63 2091 81 8 0 chr15 41270639 41270898 -60109623 + AluSx SINE Alu 27 287 -25 924 110 41 164 chr15 41270898 41270955 -60109566 - Tigger2a DNA MER2_type -2645 63 1 2221 92 3 41 chr15 41271448 41271765 -60108756 - AluSx SINE Alu -7 305 1 1265 224 32 35 chr15 41272267 41272505 -60108016 + MER2 DNA MER2_type 1 239 -105 1877 138 10 20 chr15 41272505 41272801 -60107720 - AluSx SINE Alu -19 293 1 1265 224 32 35 chr15 41272801 41272906 -60107615 + MER2 DNA MER2_type 239 343 -1 2124 208 107 51 chr15 41273662 41274373 -60106148 + L1MC4 LINE L1 7292 8042 0 191 36 36 0 chr15 41274498 41274526 -60105995 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 2267 112 7 0 chr15 41274830 41275133 -60105388 - AluSq SINE Alu -8 305 1 1520 245 80 53 chr15 41275457 41275818 -60104703 + L1ME3A LINE L1 5601 5984 -186 1594 138 100 38 chr15 41275818 41276109 -60104412 - AluJb SINE Alu -3 309 1 1520 245 80 53 chr15 41276109 41276298 -60104223 + L1ME3A LINE L1 5984 6166 -4 1537 183 3 55 chr15 41276365 41276677 -60103844 - AluJb SINE Alu -16 296 1 380 343 39 24 chr15 41276719 41276926 -60103595 + L2 LINE L2 2901 3110 -162 180 274 255 0 chr15 41277001 41277103 -60103418 + L2 LINE L2 3144 3271 -1 2502 83 0 0 chr15 41277479 41277781 -60102740 - AluSx SINE Alu -10 302 1 451 277 66 18 chr15 41279128 41279294 -60101227 + L3 LINE CR1 1385 1558 -19 216 0 0 0 chr15 41279559 41279583 -60100938 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 763 156 0 0 chr15 41279583 41279697 -60100824 - FLAM_C SINE Alu -193 119 3 21 36 0 0 chr15 41279827 41279855 -60100666 + AT_rich Low_complexity Low_complexity 1 28 0 1958 148 10 7 chr15 41280330 41280627 -60099894 - AluSx SINE Alu -14 298 1 431 214 214 26 chr15 41280627 41280973 -60099548 + L1ME4a LINE L1 5709 6119 -2 500 283 133 39 chr15 41281385 41281885 -60098636 + L2 LINE L2 2664 3292 -21 363 269 17 34 chr15 41281948 41282067 -60098454 - MIR SINE MIR -115 147 31 311 324 161 25 chr15 41282150 41282555 -60097966 - L2 LINE L2 -631 2683 2224 1253 185 119 11 chr15 41283130 41283416 -60097105 + MER58B DNA MER1_type 25 341 0 2306 89 7 0 chr15 41283429 41283721 -60096800 - AluSg SINE Alu -16 294 1 2229 121 0 3 chr15 41283730 41284027 -60096494 - AluSp SINE Alu -17 296 1 1329 122 43 135 chr15 41284034 41284225 -60096296 - AluJo SINE Alu -15 297 143 1603 189 11 11 chr15 41284225 41284511 -60096010 + AluJo SINE Alu 1 286 -26 1329 122 43 135 chr15 41284511 41284623 -60095898 - AluJo SINE Alu -169 143 22 2095 106 0 0 chr15 41284657 41284922 -60095599 - AluSq SINE Alu -48 265 1 827 154 0 23 chr15 41284938 41285068 -60095453 - FLAM_C SINE Alu -6 127 1 265 297 22 22 chr15 41285148 41285239 -60095282 - L2 LINE L2 -1357 1957 1867 781 271 101 72 chr15 41285666 41285963 -60094558 - L1MC4a LINE L1 -119 6002 5715 1720 134 24 45 chr15 41285963 41286253 -60094268 - AluJo SINE Alu -18 294 11 781 271 101 72 chr15 41286253 41286450 -60094071 - L1MC4a LINE L1 -406 5715 5486 2083 128 7 3 chr15 41286450 41286747 -60093774 - AluSx SINE Alu -14 298 1 781 271 101 72 chr15 41286747 41286845 -60093676 - L1MC4a LINE L1 -635 5486 5392 293 240 58 19 chr15 41286840 41286944 -60093577 + L1MC4 LINE L1 7139 7246 -796 * 871 170 7 20 chr15 41286949 41287102 -60093419 - FRAM SINE Alu -25 151 1 758 228 88 0 chr15 41287103 41287296 -60093225 + L1MC4 LINE L1 7238 7447 -595 455 263 8 23 chr15 41287309 41287442 -60093079 + L1MC4 LINE L1 7790 7920 -122 202 200 0 25 chr15 41287462 41287502 -60093019 + GA-rich Low_complexity Low_complexity 4 42 0 577 154 23 15 chr15 41287502 41287632 -60092889 + L1MC4 LINE L1 7912 8042 0 328 200 93 57 chr15 41287653 41287793 -60092728 - L1MC4a LINE L1 -2410 5398 5254 2139 188 194 24 chr15 41289383 41290038 -60090483 + L1MC4 LINE L1 7276 7995 0 2098 117 20 25 chr15 41290583 41290941 -60089580 + L1MA4 LINE L1 5939 6294 -6 2200 113 3 7 chr15 41291006 41291316 -60089205 - AluSx SINE Alu -3 309 1 291 209 12 35 chr15 41294990 41295076 -60085445 + L3 LINE CR1 1214 1297 -280 2038 141 6 13 chr15 41295588 41295900 -60084621 - AluSx SINE Alu -2 310 1 1939 171 34 8 chr15 41296164 41296520 -60084001 - MLT1A1 LTR MaLR 0 365 1 21 36 0 0 chr15 41296939 41296967 -60083554 + AT_rich Low_complexity Low_complexity 1 28 0 421 261 9 76 chr15 41297582 41297793 -60082728 - L2 LINE L2 -4 3309 3113 3449 197 70 33 chr15 41297828 41298642 -60081879 - MER21B LTR ERV1 -1 862 19 378 266 0 0 chr15 41298664 41298743 -60081778 - MER21B LTR ERV1 -773 90 12 450 301 68 6 chr15 41298763 41298926 -60081595 - L2 LINE L2 -261 3052 2880 2348 99 0 3 chr15 41298947 41299251 -60081270 - AluSg SINE Alu -7 303 1 198 391 87 32 chr15 41299666 41299919 -60080602 + L2 LINE L2 3006 3272 0 2138 138 17 46 chr15 41301427 41301774 -60078747 - MER1B DNA MER1_type 0 337 1 300 309 0 0 chr15 41301855 41301936 -60078585 + MIR SINE MIR 62 142 -66 1550 149 8 4 chr15 41301965 41302200 -60078321 + MER46A DNA MER2_type 1 236 0 1013 223 13 22 chr15 41302334 41302563 -60077958 - MIR SINE MIR -33 229 3 381 317 35 0 chr15 41302563 41302705 -60077816 + MIR SINE MIR 30 176 -86 255 203 188 0 chr15 41302699 41302763 -60077758 - L2 LINE L2 -1 3312 3237 * 232 243 71 0 chr15 41302769 41302839 -60077682 + MIR SINE MIR 188 262 0 217 244 0 0 chr15 41303445 41303486 -60077035 + (CA)n Simple_repeat Simple_repeat 2 42 0 978 236 48 0 chr15 41303694 41303902 -60076619 - MIR SINE MIR -44 218 1 2144 123 0 19 chr15 41304407 41304717 -60075804 - AluSx SINE Alu -8 304 1 319 309 41 31 chr15 41304823 41304920 -60075601 - MIR SINE MIR -87 121 24 393 315 103 7 chr15 41305619 41305687 -60074834 + MER5A DNA MER1_type 9 69 -120 1978 148 26 0 chr15 41305687 41305990 -60074531 + AluSx SINE Alu 1 311 -1 393 315 103 7 chr15 41305990 41306067 -60074454 + MER5A DNA MER1_type 69 168 -21 1291 183 0 0 chr15 41306180 41306399 -60074122 + AluJb SINE Alu 86 304 -8 272 192 19 0 chr15 41306467 41306519 -60074002 - L3b LINE CR1 -4 1579 1527 308 208 0 0 chr15 41306881 41306934 -60073587 + L1MD3 LINE L1 7064 7116 -879 2771 216 29 21 chr15 41306938 41307578 -60072943 + L1MD3 LINE L1 6136 6328 -16 766 172 0 33 chr15 41307688 41307810 -60072711 + FLAM_C SINE Alu 2 119 -14 21 0 0 0 chr15 41307810 41307831 -60072690 + AT_rich Low_complexity Low_complexity 1 21 0 184 322 348 0 chr15 41308165 41308280 -60072241 - L2 LINE L2 -4 3268 3114 580 251 113 9 chr15 41309469 41309700 -60070821 - L1ME4a LINE L1 -1 6120 5866 835 318 36 75 chr15 41309736 41310258 -60070263 - MER34 LTR ERV1 -29 513 12 1684 179 7 4 chr15 41310856 41311135 -60069386 + AluJb SINE Alu 13 292 -20 720 240 112 34 chr15 41311741 41311974 -60068547 + MIR SINE MIR 12 262 0 784 86 0 14 chr15 41312010 41312255 -60068266 + AluSg SINE Alu 1 293 -17 341 222 152 10 chr15 41312726 41312825 -60067696 - L2 LINE L2 -7 3265 3153 1769 153 18 3 chr15 41313029 41313340 -60067181 - AluSq SINE Alu 0 315 1 1039 119 0 0 chr15 41313340 41313474 -60067047 - AluSq/x SINE Alu -177 135 2 276 220 55 88 chr15 41315430 41315521 -60065000 - MIR SINE MIR -85 123 36 454 118 0 0 chr15 41315588 41315656 -60064865 - AluSq SINE Alu -10 302 235 1263 99 33 6 chr15 41315656 41315702 -60064819 - AluSq SINE Alu -127 186 143 2713 35 0 10 chr15 41315702 41316015 -60064506 - AluY SINE Alu -1 310 1 1263 99 33 6 chr15 41316015 41316149 -60064372 - AluSq SINE Alu -170 143 1 233 304 84 60 chr15 41316176 41316371 -60064150 - MIR SINE MIR -54 208 4 27 29 0 0 chr15 41317244 41317278 -60063243 + GC_rich Low_complexity Low_complexity 1 34 0 24 53 0 0 chr15 41317290 41317328 -60063193 + GC_rich Low_complexity Low_complexity 1 38 0 236 218 36 0 chr15 41318858 41318913 -60061608 - L1ME4a LINE L1 -81 6040 5984 202 247 93 93 chr15 41319350 41319447 -60061074 + L2 LINE L2 1915 2011 -1303 371 321 180 33 chr15 41319609 41320036 -60060485 + L2 LINE L2 2245 2734 -580 2367 86 3 0 chr15 41320489 41320792 -60059729 + AluY SINE Alu 1 304 -7 207 244 0 122 chr15 41320827 41320909 -60059612 + MER91A DNA MER1_type 1 72 -118 185 210 161 32 chr15 41321663 41321725 -60058796 + MIR SINE MIR 56 125 -83 183 42 0 0 chr15 41322325 41322349 -60058172 + (TA)n Simple_repeat Simple_repeat 2 25 0 2221 82 0 20 chr15 41322349 41322642 -60057879 - AluY SINE Alu -24 287 1 1256 159 40 49 chr15 41323550 41323776 -60056745 - MER58A DNA MER1_type 0 224 1 227 261 159 57 chr15 41324163 41324339 -60056182 + MIR SINE MIR 37 230 -32 21 36 0 0 chr15 41324458 41324486 -60056035 + AT_rich Low_complexity Low_complexity 1 28 0 21 89 0 0 chr15 41324500 41324556 -60055965 + AT_rich Low_complexity Low_complexity 1 56 0 2184 109 0 13 chr15 41324785 41325088 -60055433 + AluSg SINE Alu 1 299 -11 2244 122 3 0 chr15 41325452 41325763 -60054758 - AluSx SINE Alu 0 312 1 218 186 157 57 chr15 41326147 41326217 -60054304 - L2 LINE L2 -5 3267 3191 1918 123 20 20 chr15 41327228 41327528 -60052993 - AluSx SINE Alu -12 300 1 262 239 97 60 chr15 41327973 41328107 -60052414 - MIR SINE MIR 0 262 124 2374 92 0 0 chr15 41328502 41328797 -60051724 - AluSx SINE Alu -15 297 3 1766 131 99 26 chr15 41328822 41329135 -60051386 - MER44D DNA MER2_type -3 606 1 1514 156 35 96 chr15 41331310 41331624 -60048897 - AluJo SINE Alu -7 295 1 1693 144 59 0 chr15 41332595 41332865 -60047656 - AluSx SINE Alu -26 286 1 25 31 0 0 chr15 41334303 41334335 -60046186 + AT_rich Low_complexity Low_complexity 1 32 0 923 139 0 0 chr15 41335429 41335558 -60044963 - Tigger7 DNA MER2_type -1 2490 2362 3545 156 55 11 chr15 41335566 41336206 -60044315 - Tigger7 DNA MER2_type -1819 668 1 381 103 0 17 chr15 41336934 41336992 -60043529 - AluS SINE Alu -232 71 15 1345 129 47 13 chr15 41337224 41337457 -60043064 + MER96B DNA MER1_type? 1 241 -176 663 123 9 9 chr15 41337578 41337684 -60042837 + MER50 LTR ERV1 499 604 -130 2267 188 9 22 chr15 41337900 41338352 -60042169 - L1MB7 LINE L1 -136 6048 5603 181 321 19 0 chr15 41338780 41338833 -60041688 - L2 LINE L2 -8 3305 3252 193 375 0 0 chr15 41338983 41339079 -60041442 + L2 LINE L2 1748 1843 -1471 2053 120 0 7 chr15 41339156 41339455 -60041066 - AluSq SINE Alu -16 297 1 4580 190 48 31 chr15 41339497 41340513 -60040008 + Cheshire DNA MER1_type 7 1039 -1381 4291 161 63 72 chr15 41340516 41340982 -60039539 + Cheshire DNA MER1_type 1397 1866 -554 834 112 0 0 chr15 41340982 41341089 -60039432 + U6 snRNA snRNA 1 107 0 4291 161 63 72 chr15 41341089 41341148 -60039373 + Cheshire DNA MER1_type 1866 1924 -496 2337 93 0 6 chr15 41341148 41341459 -60039062 + AluSg SINE Alu 1 309 -1 4291 161 63 72 chr15 41341459 41341573 -60038948 + Cheshire DNA MER1_type 1924 2038 -382 2243 79 17 7 chr15 41341573 41341865 -60038656 + AluY SINE Alu 1 295 -16 4291 161 63 72 chr15 41341865 41342257 -60038264 + Cheshire DNA MER1_type 2038 2420 0 528 265 205 44 chr15 41342412 41342797 -60037724 + L2 LINE L2 2529 2975 -339 1983 215 75 18 chr15 41342980 41343473 -60037048 + MER74B LTR ERVL 52 572 -50 296 290 80 0 chr15 41343548 41343648 -60036873 - MLT1L LTR MaLR -8 607 500 364 288 45 0 chr15 41343773 41343905 -60036616 - MLT1L LTR MaLR -312 303 166 451 209 11 22 chr15 41344197 41344288 -60036233 - MER5A DNA MER1_type -9 180 91 3310 214 87 112 chr15 41345755 41346324 -60034197 + L2 LINE L2 1587 2169 -1144 2297 97 10 0 chr15 41346324 41346623 -60033898 - AluSp SINE Alu -11 302 1 3310 214 87 112 chr15 41346623 41347599 -60032922 + L2 LINE L2 2169 3097 -216 1944 146 0 25 chr15 41347867 41348183 -60032338 - AluSg SINE Alu 0 310 3 1514 35 0 0 chr15 41348345 41348516 -60032005 - L1PA5 LINE L1 0 6154 5984 249 33 0 0 chr15 41349539 41349569 -60030952 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 2280 120 37 142 chr15 41350453 41350556 -60029965 - MLT2C2 LTR ERVL 0 464 352 405 0 0 0 chr15 41350556 41350601 -60029920 + (GA)n Simple_repeat Simple_repeat 2 46 0 2280 120 37 142 chr15 41350601 41350769 -60029752 - MLT2C2 LTR ERVL -112 352 270 2234 95 3 41 chr15 41350769 41351086 -60029435 - AluSx SINE Alu -6 306 2 2280 120 37 142 chr15 41351086 41351329 -60029192 - MLT2C2 LTR ERVL -194 270 3 2097 133 0 0 chr15 41351621 41351906 -60028615 + AluSx SINE Alu 1 285 -27 2135 128 3 6 chr15 41352377 41352689 -60027832 + AluSx SINE Alu 1 311 -1 2213 107 7 0 chr15 41352838 41353137 -60027384 - AluSp SINE Alu -12 301 1 2312 82 3 3 chr15 41354665 41354959 -60025562 + AluY SINE Alu 2 295 -16 26 0 0 0 chr15 41355467 41355493 -60025028 + AT_rich Low_complexity Low_complexity 1 26 0 2252 98 0 3 chr15 41355675 41355970 -60024551 - AluSq SINE Alu -12 301 8 1500 203 70 0 chr15 41356684 41356797 -60023724 + AluJo SINE Alu 1 105 -207 198 0 0 0 chr15 41356797 41356819 -60023702 + (GAAAA)n Simple_repeat Simple_repeat 4 25 0 1500 203 70 0 chr15 41356819 41356991 -60023530 + AluJo SINE Alu 105 306 -6 2577 26 3 13 chr15 41357614 41357916 -60022605 + AluY SINE Alu 1 299 -12 2031 156 0 3 chr15 41358054 41358362 -60022159 - AluJb SINE Alu -5 307 1 2164 120 7 10 chr15 41358730 41359039 -60021482 - AluSx SINE Alu -4 308 1 514 295 70 20 chr15 41359284 41359484 -60021037 - MIR SINE MIR -50 212 3 284 226 160 44 chr15 41359836 41360016 -60020505 + MER5A DNA MER1_type 27 187 -2 305 259 208 4 chr15 41360412 41360541 -60019980 - MER5B DNA MER1_type -21 168 1 216 176 0 0 chr15 41360547 41360581 -60019940 - MIR SINE MIR -56 152 119 2318 106 0 0 chr15 41360718 41361020 -60019501 - AluSg SINE Alu -8 302 1 2337 198 83 27 chr15 41361364 41361466 -60019055 + MLT1G LTR MaLR 9 104 -486 830 223 77 59 chr15 41361466 41361616 -60018905 - MER58A DNA MER1_type -2196 224 67 2397 107 0 0 chr15 41361616 41361924 -60018597 - AluSg SINE Alu 0 310 3 830 223 77 59 chr15 41361924 41361993 -60018528 - MER58A DNA MER1_type -2353 67 1 2337 198 83 27 chr15 41361993 41362441 -60018080 + MLT1G LTR MaLR 104 590 0 472 229 50 14 chr15 41362734 41362874 -60017647 + MER31-int LTR ERV1 1043 1187 -3749 367 240 7 75 chr15 41362885 41363031 -60017490 - LTR27 LTR ERV1 -7 629 494 421 108 26 43 chr15 41363092 41363174 -60017347 - LTR28 LTR ERV1 -462 558 488 1856 128 16 22 chr15 41364063 41364375 -60016146 + AluSx SINE Alu 1 310 -2 808 150 0 50 chr15 41364731 41364871 -60015650 - FLAM_C SINE Alu 0 133 1 1974 139 13 3 chr15 41365729 41366032 -60014489 - AluSx SINE Alu -6 306 1 1416 152 9 0 chr15 41366141 41366365 -60014156 - AluJb SINE Alu -3 309 84 2349 71 34 0 chr15 41366574 41366870 -60013651 + AluSc SINE Alu 1 306 -3 984 231 54 0 chr15 41367368 41367628 -60012893 - HAL1 LINE L1 -951 1556 1283 2130 95 61 3 chr15 41367643 41367978 -60012543 - MER4B LTR ERV1 -278 332 1 2292 85 31 0 chr15 41368031 41368325 -60012196 + AluSg SINE Alu 1 303 -7 462 191 0 43 chr15 41368559 41368653 -60011868 + MER21B LTR ERV1 1 90 -773 2948 207 46 42 chr15 41368801 41369065 -60011456 + MER21B LTR ERV1 98 359 -504 3396 126 2 72 chr15 41369065 41369470 -60011051 + LTR26B LTR ERV1 1 356 -175 2140 103 24 3 chr15 41369470 41369762 -60010759 + AluSq SINE Alu 1 298 -15 3396 126 2 72 chr15 41369762 41369927 -60010594 + LTR26B LTR ERV1 356 531 0 2948 207 46 42 chr15 41369927 41370373 -60010148 + MER21B LTR ERV1 359 811 -52 2344 161 57 28 chr15 41370397 41370819 -60009702 - Tigger2a DNA MER2_type 0 434 1 2013 128 0 0 chr15 41371048 41371336 -60009185 + AluJb SINE Alu 1 288 -24 2237 82 7 14 chr15 41371689 41371983 -60008538 - AluY SINE Alu -19 292 1 595 105 258 8 chr15 41372176 41372300 -60008221 - MER4C LTR ERV1 -20 445 291 1342 143 133 48 chr15 41372355 41372670 -60007851 - MER4A LTR ERV1 -322 342 1 827 174 28 0 chr15 41372670 41372814 -60007707 + FAM SINE Alu 26 173 -12 1499 195 29 11 chr15 41372863 41373140 -60007381 + AluJo SINE Alu 1 282 -30 378 0 0 0 chr15 41373170 41373212 -60007309 + (CA)n Simple_repeat Simple_repeat 2 43 0 332 43 0 21 chr15 41373266 41373313 -60007208 + (TG)n Simple_repeat Simple_repeat 2 47 0 207 114 0 0 chr15 41374122 41374157 -60006364 + (GA)n Simple_repeat Simple_repeat 1 35 0 186 100 0 60 chr15 41374157 41374207 -60006314 + (TA)n Simple_repeat Simple_repeat 1 47 0 659 273 99 65 chr15 41374405 41374929 -60005592 + MER34 LTR ERV1 1 542 0 2078 147 0 0 chr15 41374976 41375269 -60005252 + AluSx SINE Alu 1 293 -19 2308 149 65 173 chr15 41375742 41376409 -60004112 - LTR8A LTR ERV1 -8 719 152 1888 160 3 14 chr15 41376409 41376722 -60003799 + AluJo SINE Alu 1 312 0 2308 149 65 173 chr15 41376722 41376860 -60003661 - LTR8A LTR ERV1 -575 152 1 7577 55 0 0 chr15 41377469 41378532 -60001989 - L1PA6 LINE L1 -5 6149 5093 390 239 182 45 chr15 41378703 41378950 -60001571 + L1ME4a LINE L1 5706 5986 -135 225 110 50 130 chr15 41379108 41379208 -60001313 + L1ME4a LINE L1 5993 6084 -37 918 125 0 0 chr15 41379479 41379599 -60000922 + AluSq/x SINE Alu 1 120 -193 3197 200 48 17 chr15 41379679 41379781 -60000740 + L1MA9 LINE L1 5507 5604 -708 1874 150 3 7 chr15 41379781 41380075 -60000446 + AluJb SINE Alu 1 293 -19 3197 200 48 17 chr15 41380075 41380717 -59999804 + L1MA9 LINE L1 5604 6274 -38 1989 115 7 0 chr15 41380734 41381064 -59999457 + AluSx SINE Alu 1 332 0 1721 197 64 12 chr15 41381261 41381606 -59998915 - MLT1F1 LTR MaLR 0 567 205 4581 124 56 64 chr15 41381606 41382884 -59997637 - pTR5 LTR ERV1 -133 2027 6 622 216 17 111 chr15 41382962 41383054 -59997467 - MLT1F1 LTR MaLR -372 170 102 892 158 32 37 chr15 41383054 41383244 -59997277 + MER53 DNA DNA 1 189 0 622 216 17 111 chr15 41383244 41383332 -59997189 - MLT1F1 LTR MaLR -440 102 7 1671 103 139 91 chr15 41383538 41383727 -59996794 - MSTA LTR MaLR -50 378 165 7198 60 86 0 chr15 41383727 41384780 -59995741 - L1PA8 LINE L1 -1 6171 5102 1671 103 139 91 chr15 41384780 41384921 -59995600 - MSTA LTR MaLR -263 165 32 352 297 31 46 chr15 41385039 41385129 -59995392 - L1M4 LINE L1 -1784 4362 4272 2108 98 0 57 chr15 41385129 41385444 -59995077 - AluY SINE Alu -14 297 1 352 297 31 46 chr15 41385444 41385581 -59994940 - L1M4 LINE L1 -1874 4272 4138 1894 142 0 50 chr15 41386241 41386558 -59993963 - AluSx SINE Alu -11 301 1 450 168 53 27 chr15 41386727 41386853 -59993668 + L1MA9 LINE L1 6128 6238 -74 1637 173 7 7 chr15 41387663 41387941 -59992580 - AluJo SINE Alu -21 291 14 2201 110 0 7 chr15 41388220 41388521 -59992000 - AluSx SINE Alu -13 299 1 864 256 36 52 chr15 41388522 41388831 -59991690 + L2 LINE L2 2353 2656 -658 249 167 0 0 chr15 41388913 41388967 -59991554 + L1MC4 LINE L1 6652 6705 -1337 501 228 24 60 chr15 41388970 41389137 -59991384 + L2 LINE L2 3152 3312 -1 1056 263 123 81 chr15 41389547 41389847 -59990674 - HAL1 LINE L1 -1091 1416 1130 1346 168 81 134 chr15 41389847 41390081 -59990440 - MER110A LTR ERV1 0 468 272 2144 129 0 7 chr15 41390081 41390390 -59990131 + AluJo SINE Alu 2 308 -4 1346 168 81 134 chr15 41390390 41390649 -59989872 - MER110A LTR ERV1 -196 272 1 1056 263 123 81 chr15 41390649 41390964 -59989557 - HAL1 LINE L1 -1377 1130 830 860 170 0 0 chr15 41390964 41391111 -59989410 + L1MB1 LINE L1 6020 6166 -2 1056 263 123 81 chr15 41391111 41391709 -59988812 - HAL1 LINE L1 -1677 830 1 182 167 28 0 chr15 41391721 41391757 -59988764 + L3 LINE CR1 1539 1575 -2 1751 169 7 13 chr15 41392194 41392502 -59988019 + AluJo SINE Alu 1 306 -6 3136 186 4 30 chr15 41392738 41393415 -59987106 + L1M4 LINE L1 4343 5002 -1144 2306 106 3 3 chr15 41393451 41393753 -59986768 + AluSx SINE Alu 1 302 -10 214 274 255 0 chr15 41394129 41394231 -59986290 - L2 LINE L2 -1 3271 3144 440 343 39 24 chr15 41394306 41394513 -59986008 - L2 LINE L2 -162 3110 2901 1522 183 3 55 chr15 41394555 41394867 -59985654 + AluJb SINE Alu 1 296 -16 1554 245 80 53 chr15 41394934 41395123 -59985398 - L1ME3A LINE L1 -4 6166 5984 1579 138 100 38 chr15 41395123 41395414 -59985107 + AluJb SINE Alu 1 309 -3 1554 245 80 53 chr15 41395414 41395775 -59984746 - L1ME3A LINE L1 -186 5984 5601 2253 112 7 0 chr15 41396099 41396402 -59984119 + AluSq SINE Alu 1 305 -8 191 36 36 0 chr15 41396706 41396734 -59983787 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 2145 210 107 51 chr15 41396859 41397570 -59982951 - L1MC4 LINE L1 0 8042 7292 1342 224 32 35 chr15 41398326 41398431 -59982090 - MER2 DNA MER2_type -1 343 239 1865 138 10 20 chr15 41398431 41398727 -59981794 + AluSx SINE Alu 1 293 -19 1342 224 32 35 chr15 41398727 41398965 -59981556 - MER2 DNA MER2_type -105 239 1 2203 95 3 41 chr15 41399467 41399784 -59980737 + AluSx SINE Alu 1 305 -7 328 143 0 0 chr15 41400277 41400326 -59980195 - MER8 DNA MER2_type 0 239 191 204 241 74 0 chr15 41400720 41400774 -59979747 + L3 LINE CR1 1518 1575 -2 1773 179 3 10 chr15 41401211 41401519 -59979002 + AluJo SINE Alu 1 306 -6 4621 184 18 42 chr15 41401755 41402470 -59978051 + L1MB5 LINE L1 4343 5073 -1101 2130 117 3 26 chr15 41402470 41402778 -59977743 + AluSq SINE Alu 1 301 -12 4621 184 18 42 chr15 41402778 41403256 -59977265 + L1MB5 LINE L1 5073 5561 -613 207 0 0 0 chr15 41403256 41403279 -59977242 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4621 184 18 42 chr15 41403279 41403923 -59976598 + L1MB5 LINE L1 5561 6134 -40 1781 168 25 0 chr15 41403923 41404209 -59976312 + AluJb SINE Alu 1 293 -19 4621 184 18 42 chr15 41404209 41404250 -59976271 + L1MB5 LINE L1 6134 6174 0 271 318 176 0 chr15 41405143 41405313 -59975208 + MIR SINE MIR 15 214 -48 1683 162 10 30 chr15 41405412 41405715 -59974806 + AluJo SINE Alu 1 297 -15 1069 153 6 0 chr15 41405715 41405872 -59974649 + AluJb SINE Alu 134 291 -21 183 42 0 0 chr15 41405872 41405896 -59974625 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 563 207 21 101 chr15 41406087 41406237 -59974284 - MIR SINE MIR -79 183 23 2259 133 8 8 chr15 41406237 41406591 -59973930 - THE1A LTR MaLR -1 354 1 11894 83 2 31 chr15 41406591 41406915 -59973606 - THE1A-int LTR MaLR 0 1580 1248 2316 112 0 7 chr15 41406915 41407220 -59973301 + AluSq SINE Alu 1 303 -10 11894 83 2 31 chr15 41407220 41408026 -59972495 - THE1A-int LTR MaLR -332 1248 509 2239 121 7 0 chr15 41408026 41408332 -59972189 - AluSx SINE Alu -4 308 1 11894 83 2 31 chr15 41408332 41408827 -59971694 - THE1A-int LTR MaLR -1071 509 1 2544 85 11 8 chr15 41408827 41409181 -59971340 - THE1A LTR MaLR 0 355 1 563 207 21 101 chr15 41409181 41409216 -59971305 - MIR SINE MIR -236 26 11 2211 181 47 2 chr15 41409409 41409813 -59970708 + MSTB LTR MaLR 1 422 -4 34 65 0 0 chr15 41409848 41409910 -59970611 + AT_rich Low_complexity Low_complexity 1 62 0 2308 116 3 0 chr15 41409936 41410246 -59970275 + AluSp SINE Alu 1 311 -2 585 121 0 0 chr15 41411659 41411742 -59968779 + AluSg/x SINE Alu 215 297 -15 246 194 0 32 chr15 41411745 41411807 -59968714 + CT-rich Low_complexity Low_complexity 2 61 0 7804 44 1 33 chr15 41411807 41413398 -59967123 + SVA Other Other 1 1383 -3 500 250 17 10 chr15 41414072 41414208 -59966313 - MIR SINE MIR -66 142 7 952 116 55 22 chr15 41414321 41414502 -59966019 - MER53 DNA DNA 0 189 3 2231 96 0 10 chr15 41414672 41414953 -59965568 + AluSp SINE Alu 1 280 -33 423 0 0 0 chr15 41414953 41415000 -59965521 + (CA)n Simple_repeat Simple_repeat 1 47 0 2212 117 0 0 chr15 41415025 41415325 -59965196 + AluSq SINE Alu 1 300 -13 1851 97 120 0 chr15 41415655 41415922 -59964599 - AluSc SINE Alu 0 299 1 234 313 142 33 chr15 41416343 41416554 -59963967 - L2 LINE L2 -542 2772 2539 823 182 256 12 chr15 41416635 41416877 -59963644 + AluJo SINE Alu 2 302 -10 278 323 10 10 chr15 41416997 41417096 -59963425 - L2 LINE L2 -954 2360 2262 317 143 0 0 chr15 41417126 41417175 -59963346 - AluSp SINE Alu -155 148 100 2303 108 7 0 chr15 41417645 41417950 -59962571 + AluSx SINE Alu 3 309 -3 1300 320 51 73 chr15 41417961 41418215 -59962306 - MERVL LTR ERVL -2675 2810 2552 1080 218 9 13 chr15 41418215 41418440 -59962081 + MER58A DNA MER1_type 1 224 0 1300 320 51 73 chr15 41418440 41418710 -59961811 - MERVL LTR ERVL -2933 2552 2278 1833 158 11 0 chr15 41418710 41418989 -59961532 - AluJo SINE Alu -17 295 14 1300 320 51 73 chr15 41418989 41420100 -59960421 - MERVL LTR ERVL -3207 2278 1139 5472 55 38 30 chr15 41420331 41420525 -59959996 - MER4E LTR ERV1 0 766 575 2359 109 0 0 chr15 41420525 41420836 -59959685 + AluSx SINE Alu 1 311 -1 5472 55 38 30 chr15 41420836 41421401 -59959120 - MER4E LTR ERV1 -191 575 1 1688 125 62 18 chr15 41421751 41422046 -59958475 - AluJb SINE Alu 0 307 1 341 109 125 0 chr15 41422069 41422133 -59958388 - MER5A DNA MER1_type -83 106 35 2053 148 7 0 chr15 41422299 41422609 -59957912 - AluSq SINE Alu -1 312 1 1696 45 0 27 chr15 41422619 41422843 -59957678 - L1PA5 LINE L1 0 6154 5937 498 297 69 48 chr15 41422853 41423271 -59957250 - MERVL LTR ERVL -4569 427 1 303 230 184 0 chr15 41423780 41423867 -59956654 + MIR SINE MIR 160 262 0 1755 151 75 0 chr15 41424956 41425234 -59955287 + AluJb SINE Alu 1 299 -13 1579 216 11 20 chr15 41425536 41425892 -59954629 - MLT1A1 LTR MaLR 0 365 13 1127 158 66 0 chr15 41425892 41426088 -59954433 + AluJb SINE Alu 98 306 -6 2167 150 105 0 chr15 41427040 41427420 -59953101 + MSTC LTR MaLR 1 420 -8 565 307 24 6 chr15 41427451 41427617 -59952904 - MIR SINE MIR -92 170 2 1216 14 28 0 chr15 41427823 41427964 -59952557 - AluYa5/8 SINE Alu -1 310 166 3010 159 55 2 chr15 41427980 41428539 -59951982 - L1MB5 LINE L1 0 6174 5586 47 19 0 0 chr15 41428571 41428625 -59951896 + AT_rich Low_complexity Low_complexity 1 54 0 900 236 36 19 chr15 41428629 41428848 -59951673 - MER20 DNA MER1_type 0 219 1 185 105 0 26 chr15 41429238 41429276 -59951245 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 3536 37 0 0 chr15 41429319 41429729 -59950792 - L1PA3 LINE L1 0 6155 5746 2637 46 0 0 chr15 41429857 41430159 -59950362 - AluY SINE Alu -9 302 1 983 154 108 26 chr15 41430877 41431072 -59949449 + AluJb SINE Alu 93 303 -9 195 42 0 0 chr15 41431290 41431314 -59949207 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1593 151 54 12 chr15 41431314 41431452 -59949069 - AluJb SINE Alu -42 270 139 225 0 0 0 chr15 41431452 41431477 -59949044 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1593 151 54 12 chr15 41431477 41431597 -59948924 - AluJb SINE Alu -173 139 1 229 358 81 0 chr15 41431598 41431721 -59948800 + L2 LINE L2 2227 2359 -955 846 148 0 16 chr15 41431723 41431851 -59948670 + FLAM_C SINE Alu 1 126 -17 198 318 83 59 chr15 41431869 41432158 -59948363 + L2 LINE L2 2349 2644 -670 21 0 0 0 chr15 41432630 41432651 -59947870 + AT_rich Low_complexity Low_complexity 1 21 0 860 111 8 0 chr15 41432651 41432768 -59947753 - FLAM_C SINE Alu -25 118 1 1394 207 36 16 chr15 41434226 41434531 -59945990 - AluJo SINE Alu -1 311 1 1855 134 13 43 chr15 41434878 41435200 -59945321 + AluSx SINE Alu 1 313 0 684 24 0 0 chr15 41436634 41436717 -59943804 - L1PA3 LINE L1 0 6155 6073 3388 19 0 0 chr15 41436850 41437227 -59943294 - L1PA3 LINE L1 -357 5798 5422 319 309 55 9 chr15 41438753 41438863 -59941658 - L2 LINE L2 -18 3295 3181 432 306 6 35 chr15 41439599 41439769 -59940752 - MIR3 SINE MIR 0 208 44 378 226 23 140 chr15 41441251 41441472 -59939049 + MER112 DNA MER1_type 66 260 0 726 267 58 0 chr15 41444186 41444426 -59936095 - MIR SINE MIR -5 257 4 198 71 0 0 chr15 41444871 41444899 -59935622 + (CTTTG)n Simple_repeat Simple_repeat 3 30 0 1577 130 0 42 chr15 41444907 41445146 -59935375 - AluJo SINE Alu -30 282 54 570 276 77 11 chr15 41445278 41445459 -59935062 + LTR33 LTR ERVL 1 193 -328 452 289 20 41 chr15 41445493 41445690 -59934831 + LTR33 LTR ERVL 326 518 -3 232 324 122 7 chr15 41445850 41445989 -59934532 + L2 LINE L2 3126 3280 -33 273 228 18 0 chr15 41446005 41446062 -59934459 + L2 LINE L2 3215 3272 0 903 152 0 0 chr15 41446203 41446335 -59934186 + AluJb SINE Alu 1 132 -180 747 186 44 11 chr15 41446338 41446521 -59934000 - L1MA8 LINE L1 -10 6281 6093 2545 206 116 36 chr15 41446526 41447326 -59933195 + L1ME3A LINE L1 5291 6160 -10 32 67 0 0 chr15 41447388 41447448 -59933073 + AT_rich Low_complexity Low_complexity 1 60 0 2113 116 14 0 chr15 41447448 41447732 -59932789 - AluSq SINE Alu -25 288 1 2177 91 37 17 chr15 41448963 41449259 -59931262 + AluSx SINE Alu 1 302 -10 732 212 8 0 chr15 41449339 41449471 -59931050 + FLAM_C SINE Alu 2 134 -9 393 230 80 0 chr15 41449633 41449733 -59930788 - MIR SINE MIR -90 172 65 1583 196 126 8 chr15 41449734 41450107 -59930414 - MER63 DNA MER1_type 0 1060 644 956 263 14 0 chr15 41450107 41450324 -59930197 + MER58A DNA MER1_type 5 224 0 264 172 0 52 chr15 41450324 41450382 -59930139 - MER63 DNA MER1_type -619 311 257 1963 139 13 7 chr15 41450395 41450696 -59929825 - AluJb SINE Alu -7 305 3 262 135 0 0 chr15 41450698 41450735 -59929786 - MER63 DNA MER1_type -399 37 1 1815 137 8 111 chr15 41451012 41451399 -59929122 - MER7A DNA MER2_type -1 345 1 27 29 0 0 chr15 41452630 41452664 -59927857 + AT_rich Low_complexity Low_complexity 1 34 0 1676 142 50 4 chr15 41453625 41453906 -59926615 + AluJb SINE Alu 11 304 -8 337 309 48 0 chr15 41454111 41454237 -59926284 - L2 LINE L2 0 3313 3182 2201 119 13 0 chr15 41454264 41454566 -59925955 + AluSx SINE Alu 1 306 -6 302 250 44 96 chr15 41454721 41454764 -59925757 + L2 LINE L2 3143 3187 -85 1888 157 0 16 chr15 41454764 41455070 -59925451 - AluJo SINE Alu -11 301 1 302 250 44 96 chr15 41455070 41455162 -59925359 + L2 LINE L2 3187 3271 -1 213 297 93 8 chr15 41455328 41455446 -59925075 + MIR SINE MIR 93 220 -42 287 220 46 0 chr15 41455604 41455713 -59924808 + (TA)n Simple_repeat Simple_repeat 1 114 0 1776 158 3 17 chr15 41455782 41456073 -59924448 - AluJo SINE Alu -21 291 5 271 300 125 8 chr15 41456438 41456558 -59923963 - MIR SINE MIR -57 151 18 238 296 45 11 chr15 41456701 41456789 -59923732 - MIR SINE MIR -73 135 45 425 216 35 99 chr15 41456996 41457174 -59923347 + L1ME LINE L1 56 283 -5922 1443 127 163 0 chr15 41457174 41457426 -59923095 + AluJo SINE Alu 1 293 -9 425 216 35 99 chr15 41457426 41457443 -59923078 + L1ME LINE L1 283 300 -5905 2183 127 0 10 chr15 41457569 41457876 -59922645 + AluSx SINE Alu 1 304 -8 2201 113 3 0 chr15 41457894 41458185 -59922336 + AluSx SINE Alu 1 292 -20 1234 134 5 11 chr15 41458228 41458415 -59922106 - AluJb SINE Alu -7 305 120 276 46 0 127 chr15 41458419 41458482 -59922039 - FLAM_A SINE Alu 0 133 86 379 317 42 30 chr15 41458671 41458838 -59921683 + L1MCc LINE L1 413 581 -5842 974 254 181 55 chr15 41458969 41459320 -59921201 + L1MCc LINE L1 820 1125 -5298 1670 201 0 26 chr15 41459320 41459633 -59920888 + AluJo SINE Alu 1 305 -7 2497 113 52 54 chr15 41459637 41459690 -59920831 + MSTA LTR MaLR 4 56 -372 1638 109 125 12 chr15 41459690 41459946 -59920575 + AluSg1 SINE Alu 1 285 -24 2497 113 52 54 chr15 41459946 41460318 -59920203 + MSTA LTR MaLR 56 428 0 974 254 181 55 chr15 41460318 41460492 -59920029 + L1MCc LINE L1 1127 1417 -5006 1943 134 3 47 chr15 41460572 41460893 -59919628 - AluSx SINE Alu -5 307 1 1005 151 0 58 chr15 41461037 41461209 -59919312 + Tigger2a DNA MER2_type 1 162 -272 487 231 0 72 chr15 41461217 41461297 -59919224 + L1MCc LINE L1 1434 1518 -5423 2148 147 0 6 chr15 41461297 41461611 -59918910 + AluSx SINE Alu 1 312 0 487 231 0 72 chr15 41461611 41461725 -59918796 + L1MCc LINE L1 1518 1614 -5327 416 236 43 32 chr15 41461726 41461855 -59918666 + AluJo SINE Alu 123 215 -87 524 264 114 53 chr15 41461866 41462081 -59918440 - L1MEc LINE L1 -5126 1270 1031 1987 160 13 3 chr15 41462081 41462388 -59918133 - AluSx SINE Alu -2 310 1 524 264 114 53 chr15 41462388 41462471 -59918050 - L1MEc LINE L1 -5365 1031 954 655 143 15 45 chr15 41462508 41462594 -59917927 + AluSq/x SINE Alu 1 83 -229 4890 55 2 2 chr15 41462594 41463181 -59917340 + LTR14C LTR ERVK 1 587 0 655 143 15 45 chr15 41463181 41463227 -59917294 + AluSq/x SINE Alu 83 129 -183 18211 78 5 2 chr15 41463227 41465540 -59914981 + HERVK14C LTR ERVK 47 2366 -5051 40972 69 3 8 chr15 41465640 41470861 -59909660 + HERVK14C LTR ERVK 2223 7417 0 4823 67 2 0 chr15 41470861 41471447 -59909074 + LTR14C LTR ERVK 1 587 0 1637 101 0 5 chr15 41471447 41471655 -59908866 + AluSg/x SINE Alu 81 287 -25 180 0 0 0 chr15 41471658 41471678 -59908843 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1898 133 10 39 chr15 41472889 41473198 -59907323 + AluJo SINE Alu 9 308 -4 22 0 0 0 chr15 41473326 41473348 -59907173 + AT_rich Low_complexity Low_complexity 1 22 0 734 201 0 67 chr15 41473756 41473941 -59906580 - FRAM SINE Alu 0 176 8 296 300 8 17 chr15 41473978 41474061 -59906460 + CT-rich Low_complexity Low_complexity 2 85 -35 2397 104 0 0 chr15 41474061 41474370 -59906151 - AluSq SINE Alu -4 309 1 296 300 8 17 chr15 41474370 41474406 -59906115 + CT-rich Low_complexity Low_complexity 85 120 0 219 69 0 0 chr15 41474930 41474959 -59905562 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 185 345 0 0 chr15 41475015 41475073 -59905448 + MIR SINE MIR 87 144 -118 308 119 17 0 chr15 41475298 41475357 -59905164 + L1PA16 LINE L1 6107 6166 0 1349 186 6 109 chr15 41475637 41475822 -59904699 - AluSp SINE Alu -24 289 149 1827 173 14 0 chr15 41475822 41476111 -59904410 + AluSx SINE Alu 1 293 -19 1349 186 6 109 chr15 41476111 41476247 -59904274 - AluSp SINE Alu -164 149 1 540 259 80 24 chr15 41476262 41476474 -59904047 - MIR SINE MIR 0 262 39 2296 118 0 6 chr15 41477264 41477578 -59902943 + AluSx SINE Alu 1 312 0 3225 135 65 2 chr15 41477643 41478139 -59902382 - MER1A DNA MER1_type 0 527 1 1869 164 14 0 chr15 41478375 41478667 -59901854 + AluJo SINE Alu 1 296 -16 5388 79 20 14 chr15 41478677 41479439 -59901082 + MER4E LTR ERV1 1 766 0 2469 89 3 0 chr15 41479530 41479834 -59900687 - AluSg SINE Alu -5 305 1 1470 201 37 48 chr15 41479973 41480351 -59900170 + MLT1A2 LTR MaLR 1 374 0 487 189 95 61 chr15 41482150 41482230 -59898291 - MIR3 SINE MIR -39 169 93 1162 232 83 61 chr15 41482230 41482687 -59897834 + MLT1C LTR MaLR 1 467 0 487 189 95 61 chr15 41482687 41482754 -59897767 - MIR3 SINE MIR -115 93 17 234 229 0 33 chr15 41483072 41483133 -59897388 - L2 LINE L2 -1 3312 3254 643 214 103 0 chr15 41483411 41483556 -59896965 + LTR33 LTR ERVL 5 164 -357 1098 239 59 16 chr15 41483562 41483868 -59896653 + ERVL LTR ERVL 4110 4428 -1336 666 286 65 70 chr15 41483858 41484101 -59896420 + ERVL LTR ERVL 5131 5374 -390 * 2160 107 0 20 chr15 41484101 41484400 -59896121 + AluSg SINE Alu 1 293 -17 666 286 65 70 chr15 41484400 41484769 -59895752 + ERVL LTR ERVL 5374 5740 -24 1354 240 221 16 chr15 41485268 41485622 -59894899 + L1MEc LINE L1 100 380 -5835 2146 115 7 0 chr15 41485622 41485910 -59894611 - AluSg SINE Alu -19 291 2 1354 240 221 16 chr15 41485910 41486179 -59894342 + L1MEc LINE L1 380 592 -5623 1735 192 3 10 chr15 41486179 41486487 -59894034 + AluJo SINE Alu 1 306 -6 1354 240 221 16 chr15 41486487 41486675 -59893846 + L1MEc LINE L1 592 1169 -5046 837 141 0 44 chr15 41486676 41486811 -59893710 + FLAM_C SINE Alu 2 130 -3 32 26 0 0 chr15 41486811 41486850 -59893671 + AT_rich Low_complexity Low_complexity 1 39 0 2343 99 0 0 chr15 41486873 41487167 -59893354 + AluSx SINE Alu 1 294 -18 251 278 139 0 chr15 41487264 41487379 -59893142 + MIR SINE MIR 104 234 -28 231 149 0 21 chr15 41487560 41487607 -59892914 + AluJb SINE Alu 87 132 -170 230 217 14 0 chr15 41487607 41487676 -59892845 + (TA)n Simple_repeat Simple_repeat 1 70 0 926 131 54 42 chr15 41487677 41487845 -59892676 + AluJb SINE Alu 127 296 -16 526 203 198 9 chr15 41487845 41488062 -59892459 + L1MEc LINE L1 1160 1417 -4798 231 61 0 0 chr15 41488063 41488096 -59892425 + (TG)n Simple_repeat Simple_repeat 1 33 0 2179 104 0 4 chr15 41488096 41488374 -59892147 - AluSg SINE Alu -33 277 1 509 186 31 113 chr15 41488378 41488419 -59892102 + L1MEc LINE L1 2292 2335 -3880 1848 137 48 7 chr15 41488419 41488712 -59891809 + AluJo SINE Alu 1 305 -7 509 186 31 113 chr15 41488712 41488799 -59891722 + L1MEc LINE L1 2335 2428 -3787 1800 159 47 0 chr15 41488799 41489076 -59891445 + AluJo SINE Alu 1 290 -22 1988 110 0 63 chr15 41489077 41489394 -59891127 + AluSx SINE Alu 2 298 -14 509 186 31 113 chr15 41489394 41489456 -59891065 + L1MEc LINE L1 2427 2469 -3746 21 36 0 0 chr15 41489456 41489484 -59891037 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr15 41489687 41489708 -59890813 + AT_rich Low_complexity Low_complexity 1 21 0 227 200 17 17 chr15 41490436 41490496 -59890025 + (CGG)n Simple_repeat Simple_repeat 2 61 0 2240 73 10 23 chr15 41490560 41490860 -59889661 - AluSc SINE Alu -13 296 1 1662 205 73 9 chr15 41491039 41491464 -59889057 + L1MEc LINE L1 2470 2921 -3294 * 1843 203 100 48 chr15 41491451 41491890 -59888631 + L1M4 LINE L1 4363 4844 -1302 1777 134 3 96 chr15 41491890 41492233 -59888288 - AluJb SINE Alu -1 311 1 1843 203 100 48 chr15 41492233 41492404 -59888117 + L1M4 LINE L1 4844 5005 -1141 2345 102 3 0 chr15 41492407 41492702 -59887819 + AluSp SINE Alu 1 296 -17 1232 207 96 32 chr15 41492740 41493020 -59887501 - MLT1F1 LTR MaLR -267 300 3 345 275 83 47 chr15 41493055 41493248 -59887273 - MLT1F1-int LTR MaLR -43 1328 1129 287 315 94 11 chr15 41493563 41493744 -59886777 - MLT1F1-int LTR MaLR -479 892 697 989 190 0 0 chr15 41493951 41494125 -59886396 + FRAM SINE Alu 1 171 -5 836 280 29 32 chr15 41494143 41494454 -59886067 - MLT1F1-int LTR MaLR -760 611 302 422 191 12 35 chr15 41494492 41494612 -59885909 - MLT1F1-int LTR MaLR -1297 74 1 2290 189 10 125 chr15 41494612 41494691 -59885830 - MLT1F1 LTR MaLR 0 567 480 2201 102 3 26 chr15 41494691 41494996 -59885525 - AluSx SINE Alu -14 298 1 2290 189 10 125 chr15 41494996 41495013 -59885508 - MLT1F1 LTR MaLR -87 480 463 2220 120 3 10 chr15 41495013 41495314 -59885207 - AluSx SINE Alu -13 299 1 2290 189 10 125 chr15 41495314 41495769 -59884752 - MLT1F1 LTR MaLR -104 463 -43 2195 119 0 3 chr15 41495769 41496072 -59884449 - AluSq SINE Alu -11 302 1 2290 189 10 125 chr15 41496072 41496092 -59884429 - MLT1F1 LTR MaLR -610 4294967253 68 1035 171 6 0 chr15 41496092 41496256 -59884265 - FAM SINE Alu -10 165 1 2290 189 10 125 chr15 41496256 41496305 -59884216 - MLT1F1 LTR MaLR -498 69 16 1342 95 0 0 chr15 41496473 41496641 -59883880 - AluSg/x SINE Alu -17 293 126 2259 87 40 3 chr15 41496644 41496942 -59883579 - AluY SINE Alu 0 311 3 3051 152 116 21 chr15 41497182 41497698 -59882823 + LTR51 LTR ERV1 3 587 -84 2124 147 0 0 chr15 41497698 41498010 -59882511 + AluJo SINE Alu 1 312 0 3051 152 116 21 chr15 41498010 41498104 -59882417 + LTR51 LTR ERV1 587 671 0 950 126 0 0 chr15 41498694 41498821 -59881700 - AluSx SINE Alu -145 167 41 896 144 0 0 chr15 41498927 41499059 -59881462 - AluSg/x SINE Alu -11 301 170 1844 111 0 0 chr15 41499561 41499796 -59880725 + AluSx SINE Alu 1 235 -77 212 51 0 51 chr15 41499811 41499850 -59880671 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 567 132 0 0 chr15 41500379 41500470 -59880051 + (TGGA)n Simple_repeat Simple_repeat 4 94 0 242 267 164 27 chr15 41500813 41500959 -59879562 - MER5A DNA MER1_type 0 189 24 393 273 58 78 chr15 41501007 41501503 -59879018 - MARNA DNA Mariner -8 578 9 690 262 52 26 chr15 41501524 41501757 -59878764 - MIR SINE MIR -21 241 3 810 150 0 0 chr15 41501769 41501882 -59878639 - FLAM_C SINE Alu -26 117 5 2032 159 0 0 chr15 41502746 41503042 -59877479 - AluJb SINE Alu -16 296 1 2113 123 16 3 chr15 41503519 41503827 -59876694 - AluJb SINE Alu 0 312 1 663 0 0 0 chr15 41504707 41504779 -59875742 - tRNA-His-CAC tRNA tRNA -3 72 1 663 0 0 0 chr15 41505445 41505517 -59875004 + tRNA-His-CAC tRNA tRNA 1 72 -3 1711 65 0 9 chr15 41505946 41506160 -59874361 - AluSg/x SINE Alu 0 310 99 663 0 0 0 chr15 41507252 41507324 -59873197 + tRNA-His-CAC tRNA tRNA 1 72 -3 1174 122 17 0 chr15 41507630 41507810 -59872711 - AluSg/x SINE Alu -1 309 127 23 0 0 0 chr15 41507819 41507842 -59872679 + AT_rich Low_complexity Low_complexity 1 23 0 832 178 20 0 chr15 41508658 41508804 -59871717 - FRAM SINE Alu -7 169 21 572 284 35 74 chr15 41508815 41509009 -59871512 - Charlie8 DNA MER1_type -1889 528 328 2520 52 0 13 chr15 41509009 41509314 -59871207 - AluY SINE Alu -10 301 1 572 284 35 74 chr15 41509314 41509536 -59870985 - Charlie8 DNA MER1_type -2089 328 144 2282 94 14 0 chr15 41509536 41509833 -59870688 + AluSx SINE Alu 1 301 -11 572 284 35 74 chr15 41509833 41509930 -59870591 - Charlie8 DNA MER1_type -2273 144 45 399 143 29 14 chr15 41510272 41510342 -59870179 + MER66B LTR ERV1 288 358 -128 23 0 0 0 chr15 41510342 41510365 -59870156 + AT_rich Low_complexity Low_complexity 1 23 0 327 305 30 8 chr15 41510559 41510690 -59869831 + L1ME LINE L1 5568 5701 -420 1793 167 3 10 chr15 41510799 41511093 -59869428 + AluJb SINE Alu 1 292 -20 1261 199 70 50 chr15 41511117 41511279 -59869242 + L1MC4 LINE L1 6784 6941 -1101 2367 101 0 0 chr15 41511279 41511586 -59868935 + AluSx SINE Alu 1 307 -5 1261 199 70 50 chr15 41511586 41511765 -59868756 + L1MC4 LINE L1 6941 7132 -910 273 139 0 0 chr15 41511765 41511808 -59868713 + MER4A LTR ERV1 47 89 -575 1498 156 0 12 chr15 41511808 41512051 -59868470 - AluJb SINE Alu -9 303 64 451 85 0 0 chr15 41512163 41512222 -59868299 - Alu SINE Alu -259 59 1 2126 107 205 100 chr15 41512222 41512744 -59867777 + MER4A LTR ERV1 88 664 0 1442 267 58 27 chr15 41512744 41513260 -59867261 + L1MC4 LINE L1 7146 7677 -365 2417 87 0 13 chr15 41513260 41513572 -59866949 + AluY SINE Alu 1 308 -3 270 171 0 0 chr15 41513601 41513642 -59866879 + MER57A LTR ERV1 295 335 -68 583 294 57 4 chr15 41513690 41513969 -59866552 + L1MC4 LINE L1 7690 7983 -59 777 166 0 29 chr15 41513985 41514124 -59866397 - FLAM_C SINE Alu -7 136 2 825 155 0 8 chr15 41514444 41514573 -59865948 + FLAM_C SINE Alu 1 128 -5 1494 201 61 0 chr15 41514584 41514863 -59865658 + AluJo SINE Alu 1 296 -16 22 0 0 0 chr15 41515073 41515095 -59865426 + AT_rich Low_complexity Low_complexity 1 22 0 294 207 341 0 chr15 41515767 41515902 -59864619 + MER5A DNA MER1_type 9 189 0 686 179 0 0 chr15 41515968 41516080 -59864441 - FRAM SINE Alu -66 110 1 1910 141 24 7 chr15 41516242 41516540 -59863981 + AluSx SINE Alu 1 303 -9 2124 208 107 51 chr15 41517224 41517935 -59862586 + L1MC4 LINE L1 7292 8042 0 191 36 36 0 chr15 41518060 41518088 -59862433 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 2262 116 7 0 chr15 41518392 41518695 -59861826 - AluSq SINE Alu -8 305 1 2332 82 3 3 chr15 41520223 41520517 -59860004 + AluY SINE Alu 2 295 -16 26 0 0 0 chr15 41521024 41521050 -59859471 + AT_rich Low_complexity Low_complexity 1 26 0 2259 99 0 3 chr15 41521232 41521526 -59858995 - AluSq SINE Alu -13 300 8 3553 106 0 26 chr15 41622019 41622334 -59758187 + L1PA6 LINE L1 5475 5772 -382 2189 82 4 0 chr15 41622334 41622604 -59757917 + AluY SINE Alu 35 305 -6 3553 106 0 26 chr15 41622604 41622817 -59757704 + L1PA6 LINE L1 5772 5989 -165 2823 118 29 0 chr15 41623170 41623587 -59756934 - Tigger1 DNA MER2_type -1191 1227 799 356 127 0 20 chr15 41623604 41623676 -59756845 - AluJo SINE Alu -166 136 82 247 88 0 0 chr15 41623754 41623788 -59756733 - Tigger1 DNA MER2_type -1821 597 564 713 143 0 0 chr15 41623801 41623906 -59756615 + AluSq/x SINE Alu 2 106 -207 262 278 16 50 chr15 41623960 41624365 -59756156 + GA-rich Low_complexity Low_complexity 1 391 0 27 0 0 0 chr15 41624845 41624872 -59755649 + GC_rich Low_complexity Low_complexity 1 27 0 907 134 123 6 chr15 41625348 41625519 -59755002 - Tigger1 DNA MER2_type 0 2418 2228 518 182 10 0 chr15 41625566 41625665 -59754856 + FRAM SINE Alu 46 145 -31 1048 101 7 0 chr15 41625769 41625907 -59754614 - AluSq/x SINE Alu -173 139 1 452 224 28 19 chr15 41626382 41626489 -59754032 + L2 LINE L2 3144 3251 -21 382 300 94 0 chr15 41626546 41626716 -59753805 + MIR SINE MIR 70 255 -7 22 88 0 0 chr15 41627258 41627315 -59753206 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr15 41627346 41627369 -59753152 + AT_rich Low_complexity Low_complexity 1 23 0 2055 133 0 10 chr15 41627369 41627663 -59752858 - AluSx SINE Alu -21 291 1 3751 183 123 14 chr15 41627852 41628861 -59751660 + MER52A LTR ERV1 1 1272 -6 486 312 82 68 chr15 41628979 41629269 -59751252 - MLT1K LTR MaLR -54 534 232 2396 98 0 0 chr15 41629269 41629565 -59750956 + AluSx SINE Alu 1 296 -16 486 312 82 68 chr15 41629565 41629800 -59750721 - MLT1K LTR MaLR -356 232 2 376 129 14 29 chr15 41629999 41630069 -59750452 + Alu SINE Alu 234 302 0 211 316 13 0 chr15 41630113 41630189 -59750332 - MIR SINE MIR -30 232 156 * 974 252 4 46 chr15 41630187 41630449 -59750072 + MIR SINE MIR 12 262 0 317 111 0 0 chr15 41630479 41630524 -59749997 - MER4D LTR ERV1 -77 826 782 364 324 29 22 chr15 41630527 41630666 -59749855 - MIR SINE MIR -122 140 1 1855 79 4 0 chr15 41631081 41631321 -59749200 - MER41A LTR ERV1 0 554 314 226 188 0 0 chr15 41631316 41631364 -59749157 - Alu SINE Alu 0 301 254 * 995 115 0 7 chr15 41631366 41631505 -59749016 - AluSq/x SINE Alu -173 139 2 2499 85 0 3 chr15 41631506 41631836 -59748685 - MER41A LTR ERV1 -225 329 1 3200 163 34 63 chr15 41632008 41632800 -59747721 + L1MB3 LINE L1 4644 5458 -725 809 207 24 12 chr15 41632800 41632964 -59747557 + FAM SINE Alu 1 166 -9 3200 163 34 63 chr15 41632964 41633019 -59747502 + L1MB3 LINE L1 5458 5513 -670 216 0 0 0 chr15 41633019 41633043 -59747478 + (CA)n Simple_repeat Simple_repeat 2 25 0 3200 163 34 63 chr15 41633043 41633117 -59747404 + L1MB3 LINE L1 5513 5588 -595 2080 145 0 0 chr15 41633117 41633414 -59747107 + AluSx SINE Alu 3 299 -13 3200 163 34 63 chr15 41633414 41633780 -59746741 + L1MB3 LINE L1 5588 5899 -284 671 178 67 15 chr15 41633780 41633915 -59746606 + AluJo SINE Alu 2 143 -169 627 280 66 44 chr15 41635494 41635764 -59744757 + LTR33A LTR ERVL 13 288 -235 357 148 9 0 chr15 41635764 41635839 -59744682 - LTR41 LTR ERVL 0 795 701 826 158 0 0 chr15 41635840 41635967 -59744554 + FLAM_C SINE Alu 1 127 -16 1171 241 180 52 chr15 41635984 41636556 -59743965 - LTR41 LTR ERVL -54 719 74 311 167 2 17 chr15 41636556 41636625 -59743896 - MLT1E3 LTR MaLR 0 624 322 912 221 53 12 chr15 41636745 41636989 -59743532 + AluSq SINE Alu 54 307 -6 542 184 142 0 chr15 41637366 41637507 -59743014 - MIR SINE MIR -27 235 75 276 169 208 26 chr15 41637660 41637737 -59742784 + MIR SINE MIR 20 110 -98 2138 114 3 7 chr15 41638176 41638466 -59742055 - AluSx SINE Alu -23 289 1 296 305 53 15 chr15 41638508 41638639 -59741882 - MER77 LTR ERV1 -62 543 408 532 176 0 0 chr15 41638683 41638768 -59741753 + FRAM SINE Alu 73 157 -19 440 263 12 22 chr15 41638854 41639006 -59741515 - MER21B LTR ERV1 -398 207 17 3712 243 25 80 chr15 41639006 41639390 -59741131 - L1M LINE L1 -801 5345 4941 2237 89 24 0 chr15 41639390 41639683 -59740838 - AluSp SINE Alu -13 300 1 3712 243 25 80 chr15 41639683 41639776 -59740745 - L1M LINE L1 -1205 4941 4844 2105 145 0 0 chr15 41639776 41640080 -59740441 - AluJb SINE Alu -8 304 1 3712 243 25 80 chr15 41640080 41640267 -59740254 - L1M LINE L1 -1302 4844 4648 1668 150 35 3 chr15 41640267 41640554 -59739967 - AluSx SINE Alu -16 296 1 3712 243 25 80 chr15 41640554 41640786 -59739735 - L1M LINE L1 -1498 4648 4405 1675 164 11 11 chr15 41640786 41641067 -59739454 + AluJo SINE Alu 1 281 -31 3712 243 25 80 chr15 41641067 41641497 -59739024 - L1M LINE L1 -1741 4405 4109 * 14541 19 8 1 chr15 41641493 41643423 -59737098 + L1P1 LINE L1 3705 5645 -510 259 317 46 83 chr15 41643647 41643676 -59736845 - L2 LINE L2 -217 3055 3026 2307 79 0 30 chr15 41643676 41644022 -59736499 - AluSx SINE Alu 0 312 1 259 317 46 83 chr15 41644022 41644099 -59736422 - L2 LINE L2 -246 3026 2948 386 209 102 94 chr15 41644099 41644353 -59736168 - MER112 DNA MER1_type 0 256 1 259 317 46 83 chr15 41644353 41644485 -59736036 - L2 LINE L2 -324 2948 2825 285 333 7 28 chr15 41644914 41645055 -59735466 + MIR3 SINE MIR 65 202 -6 796 103 7 97 chr15 41646047 41646192 -59734329 + FLAM_C SINE Alu 1 132 -1 2482 194 88 11 chr15 41646535 41647060 -59733461 - MLT1F1 LTR MaLR -2 565 1 2498 52 0 0 chr15 41647766 41648057 -59732464 + AluY SINE Alu 1 291 -20 2066 143 0 13 chr15 41648308 41648444 -59732077 + AluSx SINE Alu 1 137 -175 2234 92 0 10 chr15 41648444 41648773 -59731748 + AluSq SINE Alu 1 313 0 2066 143 0 13 chr15 41648773 41648943 -59731578 + AluSx SINE Alu 137 303 -9 1959 142 0 19 chr15 41649034 41649343 -59731178 + AluJb SINE Alu 1 303 -9 545 184 0 18 chr15 41649366 41649475 -59731046 - AluJo SINE Alu -1 311 205 783 183 0 0 chr15 41649488 41649614 -59730907 - AluJo SINE Alu -186 126 1 3375 148 11 2 chr15 41649666 41650194 -59730327 + Tigger1 DNA MER2_type 2 534 -1884 385 287 20 13 chr15 41650197 41650353 -59730168 + AluJb SINE Alu 140 254 -48 213 77 77 19 chr15 41650367 41650419 -59730102 + GA-rich Low_complexity Low_complexity 3 57 0 29 61 0 0 chr15 41650642 41650675 -59729846 + AT_rich Low_complexity Low_complexity 1 33 0 1283 165 4 57 chr15 41651078 41651326 -59729195 - AluJo SINE Alu -73 239 5 1989 136 7 7 chr15 41651380 41651674 -59728847 - AluJb SINE Alu -18 294 1 1734 111 12 95 chr15 41651707 41651886 -59728635 - AluSx SINE Alu -14 298 156 2884 3 0 0 chr15 41651886 41652188 -59728333 - AluYa5 SINE Alu -9 302 1 1734 111 12 95 chr15 41652188 41652333 -59728188 - AluSx SINE Alu -156 156 1 770 234 103 38 chr15 41652436 41652793 -59727728 - MLT1I LTR MaLR 0 409 1 2343 89 13 19 chr15 41652876 41653189 -59727332 - AluSp SINE Alu -2 311 1 6309 162 21 0 chr15 41653189 41654239 -59726282 - L1MC1 LINE L1 -8 6325 5254 553 174 0 0 chr15 41654256 41654354 -59726167 - AluSg/x SINE Alu -1 308 211 355 93 0 0 chr15 41654454 41654508 -59726013 + AluSp/q SINE Alu 246 299 -4 205 171 0 24 chr15 41654631 41654672 -59725849 + GA-rich Low_complexity Low_complexity 5 44 0 743 110 0 0 chr15 41654949 41655049 -59725472 + AluJb SINE Alu 160 259 -53 207 0 0 0 chr15 41655160 41655183 -59725338 + (A)n Simple_repeat Simple_repeat 1 23 0 2134 126 0 16 chr15 41655337 41655647 -59724874 - AluSq SINE Alu -8 305 1 1900 157 61 28 chr15 41655688 41656051 -59724470 - THE1C LTR MaLR 0 375 1 1827 182 48 8 chr15 41656373 41656724 -59723797 - MLT1A1 LTR MaLR 0 365 1 2469 80 3 10 chr15 41656770 41657084 -59723437 - AluSp SINE Alu -1 312 1 5929 113 29 1 chr15 41657272 41658140 -59722381 - L1PA13 LINE L1 0 6163 5272 817 209 10 20 chr15 41658277 41658473 -59722048 - AluSp SINE Alu 0 313 120 22 35 0 0 chr15 41658661 41658690 -59721831 + AT_rich Low_complexity Low_complexity 1 29 0 1080 196 117 32 chr15 41658875 41659156 -59721365 - MLT1A1 LTR MaLR -4 361 57 1434 133 5 5 chr15 41659156 41659366 -59721155 + AluSg/x SINE Alu 86 295 -17 771 164 0 0 chr15 41659702 41659830 -59720691 - AluSg/x SINE Alu -1 308 181 1946 120 11 3 chr15 41659937 41660220 -59720301 + AluSx SINE Alu 23 307 -5 5082 111 0 10 chr15 41660307 41661050 -59719471 - LTR17 LTR ERV1 0 780 1 1999 132 0 39 chr15 41661108 41661419 -59719102 - AluSx SINE Alu -13 299 1 4148 127 52 0 chr15 41661947 41662529 -59717992 + LTR9 LTR ERV1 1 612 0 453 297 54 7 chr15 41662682 41662830 -59717691 - MIR SINE MIR -73 189 35 1913 137 45 3 chr15 41662890 41663182 -59717339 - AluJb SINE Alu -8 304 1 2163 114 0 7 chr15 41663587 41663884 -59716637 - AluSg SINE Alu -15 295 1 30 59 0 0 chr15 41663884 41663935 -59716586 + AT_rich Low_complexity Low_complexity 1 51 0 207 0 0 0 chr15 41664066 41664089 -59716432 + (TG)n Simple_repeat Simple_repeat 2 24 0 2286 114 0 0 chr15 41664172 41664478 -59716043 - AluSg SINE Alu -2 308 3 2157 89 67 8 chr15 41664491 41664859 -59715662 - LTR7 LTR ERV1 0 450 1 382 270 58 69 chr15 41665296 41665485 -59715036 + MIR SINE MIR 30 216 -46 21 36 0 0 chr15 41665502 41665530 -59714991 + AT_rich Low_complexity Low_complexity 1 28 0 1229 274 60 3 chr15 41665900 41666232 -59714289 + MLT1H1 LTR MaLR 12 362 -193 761 171 0 0 chr15 41666687 41666798 -59713723 + FLAM_C SINE Alu 1 111 -32 713 276 130 21 chr15 41667265 41667595 -59712926 + MLT1J LTR MaLR 1 366 -145 2378 156 79 9 chr15 41667762 41668193 -59712328 + LOR1b LTR ERV1 1 461 0 297 352 102 20 chr15 41668323 41668577 -59711944 - L2 LINE L2 -221 3051 2776 1288 102 0 11 chr15 41668577 41668753 -59711768 + AluSq SINE Alu 1 174 -139 2123 128 112 11 chr15 41668764 41669140 -59711381 + MSTA LTR MaLR 15 428 0 348 289 15 30 chr15 41669146 41669281 -59711240 + HERV16 LTR ERVL 357 489 -4507 2251 100 0 40 chr15 41669284 41669605 -59710916 + AluSg SINE Alu 1 308 -2 1519 144 111 22 chr15 41669614 41669885 -59710636 + AluJb SINE Alu 1 295 -17 591 356 0 0 chr15 41669887 41670075 -59710446 + HERV16 LTR ERVL 474 661 -4335 23 86 0 0 chr15 41670540 41670598 -59709923 + AT_rich Low_complexity Low_complexity 1 58 0 687 298 133 19 chr15 41670655 41670970 -59709551 + HERV16 LTR ERVL 731 1081 -3915 1503 173 0 11 chr15 41671398 41671670 -59708851 + AluJb SINE Alu 44 312 0 1323 291 45 19 chr15 41671670 41672089 -59708432 + HERV16 LTR ERVL 2577 3006 -1990 893 318 84 5 chr15 41672127 41672520 -59708001 + HERV16 LTR ERVL 3112 3535 -2229 372 227 191 0 chr15 41672730 41672838 -59707683 - LTR33A LTR ERVL -111 412 284 254 204 0 19 chr15 41672838 41672892 -59707629 + LTR41 LTR ERVL 1 53 -720 1934 226 78 35 chr15 41672893 41673428 -59707093 + MLT1E1 LTR MaLR 6 563 -91 1686 110 73 4 chr15 41673537 41673782 -59706739 + AluSx SINE Alu 37 298 -14 822 207 58 5 chr15 41673782 41673979 -59706542 - L1MC/D LINE L1 -503 5661 5483 1795 188 35 49 chr15 41673997 41674422 -59706099 - L1MC/D LINE L1 -986 5160 4742 744 212 30 69 chr15 41674486 41674717 -59705804 - L1ME2 LINE L1 -127 6037 5816 186 43 0 0 chr15 41675184 41675207 -59705314 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1398 241 34 13 chr15 41676841 41677222 -59703299 - MLT2C1 LTR ERVL -8 389 1 198 306 125 28 chr15 41677821 41677965 -59702556 - L2 LINE L2 -183 3089 2932 361 147 27 13 chr15 41678256 41678331 -59702190 - L1MDa LINE L1 -6188 352 277 1345 147 0 50 chr15 41678380 41678618 -59701903 - AluJo SINE Alu 0 312 87 1770 161 0 38 chr15 41678636 41678952 -59701569 - AluJo SINE Alu -8 304 1 270 236 0 0 chr15 41678959 41679031 -59701490 - L1ME2 LINE L1 -1 6177 6098 2522 63 0 0 chr15 41679032 41679334 -59701187 - AluY SINE Alu -9 302 1 22 0 0 0 chr15 41679334 41679356 -59701165 + AT_rich Low_complexity Low_complexity 1 22 0 294 128 21 0 chr15 41679594 41679641 -59700880 + MER58 DNA MER1_type 2373 2420 0 477 171 0 0 chr15 41679996 41680072 -59700449 + AluSg/x SINE Alu 210 285 -27 2206 121 3 0 chr15 41680110 41680415 -59700106 + AluSx SINE Alu 1 306 -6 316 136 68 17 chr15 41680908 41680967 -59699554 - MER81 DNA DNA -49 65 4 196 286 0 0 chr15 41681743 41681792 -59698729 - MIR SINE MIR -45 217 169 2201 118 0 7 chr15 41682311 41682608 -59697913 - AluSx SINE Alu -17 295 1 222 261 0 76 chr15 41682711 41682803 -59697718 - MIR SINE MIR -54 208 124 1962 146 3 7 chr15 41683118 41683460 -59697061 + AluSq SINE Alu 1 313 0 2085 141 0 0 chr15 41683850 41684162 -59696359 - AluSx SINE Alu 0 312 1 387 0 0 0 chr15 41684558 41684601 -59695920 + (CA)n Simple_repeat Simple_repeat 2 44 0 2303 176 54 54 chr15 41684978 41685415 -59695106 + MLT1D LTR MaLR 1 441 -64 2078 92 3 3 chr15 41685415 41685726 -59694795 + AluY SINE Alu 1 311 0 2303 176 54 54 chr15 41685726 41685788 -59694733 + MLT1D LTR MaLR 440 501 -4 3512 148 28 20 chr15 41686187 41686299 -59694222 - MER41B LTR ERV1 -27 608 498 2513 61 0 0 chr15 41686299 41686595 -59693926 + AluY SINE Alu 2 297 -14 3512 148 28 20 chr15 41686595 41687085 -59693436 - MER41B LTR ERV1 -137 498 1 730 193 29 29 chr15 41687336 41687476 -59693045 + AluJo SINE Alu 2 141 -171 801 156 7 37 chr15 41687820 41687955 -59692566 + FLAM_C SINE Alu 1 131 -2 2087 91 46 3 chr15 41688097 41688382 -59692139 - AluSx SINE Alu -15 297 1 2540 115 72 213 chr15 41688402 41688526 -59691995 - MER4D LTR ERV1 0 832 692 4621 116 8 0 chr15 41688526 41689155 -59691366 - MER41B LTR ERV1 -1 634 1 2540 115 72 213 chr15 41689155 41689299 -59691222 - MER4D LTR ERV1 -140 692 529 770 188 0 14 chr15 41689299 41689437 -59691084 + FLAM_C SINE Alu 6 141 -2 2540 115 72 213 chr15 41689437 41689514 -59691007 - MER4D LTR ERV1 -303 529 443 1927 118 0 49 chr15 41689514 41689819 -59690702 - AluSq SINE Alu -23 290 1 2540 115 72 213 chr15 41689819 41689830 -59690691 - MER4D LTR ERV1 -389 443 432 2155 118 3 3 chr15 41689830 41690126 -59690395 - AluSp SINE Alu -16 297 2 2540 115 72 213 chr15 41690126 41690678 -59689843 - MER4D LTR ERV1 -400 432 1 1029 227 140 12 chr15 41690798 41691120 -59689401 - MLT1D LTR MaLR -13 492 130 720 111 10 0 chr15 41691121 41691220 -59689301 - AluSg/x SINE Alu -20 289 190 545 195 70 8 chr15 41691220 41691348 -59689173 - MLT1D LTR MaLR -367 138 3 1290 128 41 0 chr15 41692846 41693042 -59687479 + MER105 DNA DNA 1 204 0 189 340 83 13 chr15 41693542 41693698 -59686823 + L2 LINE L2 2712 2878 -436 1139 237 128 11 chr15 41693792 41694150 -59686371 + L1MC4a LINE L1 5511 5910 -1898 274 330 125 61 chr15 41694345 41694609 -59685912 + L2 LINE L2 2992 3272 0 189 0 0 0 chr15 41695065 41695086 -59685435 + (TC)n Simple_repeat Simple_repeat 2 22 0 29 0 0 0 chr15 41695220 41695249 -59685272 + AT_rich Low_complexity Low_complexity 1 29 0 2099 143 0 0 chr15 41695300 41695594 -59684927 - AluSx SINE Alu -13 299 6 24 0 0 0 chr15 41696304 41696328 -59684193 + AT_rich Low_complexity Low_complexity 1 24 0 1156 134 0 0 chr15 41696331 41696488 -59684033 - AluJo/FRAM SINE Alu -9 293 137 523 173 0 0 chr15 41696490 41696565 -59683956 - AluJ/FLAM SINE Alu -236 76 2 857 50 0 0 chr15 41696875 41696974 -59683547 + HY3 scRNA scRNA 1 99 -2 21 0 0 0 chr15 41696974 41696995 -59683526 + AT_rich Low_complexity Low_complexity 1 21 0 710 126 87 0 chr15 41698005 41698108 -59682413 + AluSq/x SINE Alu 2 113 -200 2360 211 26 4 chr15 41698230 41698738 -59681783 - L1M4 LINE L1 -2022 4124 3606 303 185 0 19 chr15 41698739 41698793 -59681728 - MER44D DNA MER2_type 0 609 557 * 580 143 271 0 chr15 41698789 41698929 -59681592 - MER46B DNA MER2_type -182 54 2 * 1426 138 38 50 chr15 41698929 41699187 -59681334 - MER44D DNA MER2_type -80 529 5 1522 247 44 7 chr15 41699191 41699644 -59680877 - L1M4 LINE L1 -2540 3606 3137 216 0 0 0 chr15 41699757 41699781 -59680740 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 1604 158 14 64 chr15 41699788 41700085 -59680436 - AluJo SINE Alu -30 282 1 454 298 72 66 chr15 41700368 41700549 -59679972 - MIR3 SINE MIR -21 187 6 1873 156 0 17 chr15 41701322 41701624 -59678897 + AluJo SINE Alu 6 302 -10 778 189 0 15 chr15 41701977 41702109 -59678412 + FLAM_C SINE Alu 2 131 -12 2368 95 0 16 chr15 41703464 41703780 -59676741 - AluSq SINE Alu -2 311 1 776 178 0 0 chr15 41703877 41703995 -59676526 - FLAM_C SINE Alu -24 119 2 23 0 0 0 chr15 41704615 41704638 -59675883 + AT_rich Low_complexity Low_complexity 1 23 0 2398 84 0 3 chr15 41705383 41705682 -59674839 + AluSc SINE Alu 1 298 -11 24 32 0 0 chr15 41706170 41706201 -59674320 + AT_rich Low_complexity Low_complexity 1 31 0 257 115 39 58 chr15 41706449 41706501 -59674020 + MER5B DNA MER1_type 126 176 -2 236 256 181 45 chr15 41706520 41706653 -59673868 - MER5B DNA MER1_type -4 174 24 180 205 0 26 chr15 41706618 41706657 -59673864 + MER5A DNA MER1_type 132 169 -20 * 808 200 0 0 chr15 41707074 41707243 -59673278 + FRAM SINE Alu 8 176 0 2171 97 7 10 chr15 41707788 41708096 -59672425 + AluSx SINE Alu 3 309 -3 270 86 0 78 chr15 41708104 41708348 -59672173 + AluSx SINE Alu 1 318 0 21 0 0 0 chr15 41708545 41708566 -59671955 + AT_rich Low_complexity Low_complexity 1 21 0 1074 44 0 0 chr15 41708705 41708840 -59671681 - AluY SINE Alu -13 298 164 217 67 22 22 chr15 41708969 41709014 -59671507 + (TATAA)n Simple_repeat Simple_repeat 5 49 0 313 235 40 98 chr15 41709014 41709164 -59671357 + L1MC4 LINE L1 6595 6705 -1337 193 29 59 0 chr15 41709165 41709199 -59671322 + (TA)n Simple_repeat Simple_repeat 2 37 0 209 135 58 10 chr15 41709340 41709438 -59671083 + (TA)n Simple_repeat Simple_repeat 2 105 0 2242 65 0 14 chr15 41709438 41709732 -59670789 - AluY SINE Alu -21 290 1 748 162 0 0 chr15 41709776 41709893 -59670628 - AluJb SINE Alu -194 118 2 967 267 89 11 chr15 41709973 41710254 -59670267 - LTR16B LTR ERVL -161 303 1 617 230 155 0 chr15 41711388 41711562 -59668959 + MIR SINE MIR 54 254 -8 1639 124 69 4 chr15 41712674 41712949 -59667572 + AluSg SINE Alu 1 293 -17 2067 125 38 3 chr15 41713500 41713820 -59666701 + MLT2D LTR ERVL 1 331 -83 1111 78 13 0 chr15 41713879 41714033 -59666488 + AluSc SINE Alu 149 304 -5 375 230 36 50 chr15 41714076 41714215 -59666306 - LTR47B LTR ERVL -27 416 280 391 307 22 17 chr15 41715109 41715288 -59665233 + CT-rich Low_complexity Low_complexity 1 180 0 308 185 31 31 chr15 41715322 41715452 -59665069 + CT-rich Low_complexity Low_complexity 4 133 0 209 180 20 0 chr15 41715460 41715510 -59665011 + C-rich Low_complexity Low_complexity 5 55 0 * 663 150 42 12 chr15 41715506 41715673 -59664848 + CT-rich Low_complexity Low_complexity 4 175 0 224 71 0 0 chr15 41715673 41715701 -59664820 + (TCCCC)n Simple_repeat Simple_repeat 4 31 0 811 141 13 47 chr15 41715704 41715853 -59664668 - FRAM SINE Alu -40 136 1 2163 109 0 3 chr15 41716472 41716776 -59663745 - AluSg SINE Alu -1 309 7 277 333 100 25 chr15 41716888 41717128 -59663393 - L2 LINE L2 0 3272 3015 1085 149 0 26 chr15 41717668 41717863 -59662658 + AluSg/x SINE Alu 111 300 -12 243 0 0 0 chr15 41717864 41717891 -59662630 + (TA)n Simple_repeat Simple_repeat 2 28 0 268 188 0 0 chr15 41718016 41718064 -59662457 + MER20B DNA MER1_type 735 782 -1 1526 171 27 104 chr15 41719436 41719509 -59661012 - Charlie4a DNA MER1_type -1456 505 428 1978 83 25 0 chr15 41719509 41719786 -59660735 - AluSx SINE Alu -22 290 7 1526 171 27 104 chr15 41719786 41720059 -59660462 - Charlie4a DNA MER1_type -1533 428 204 2290 95 0 0 chr15 41720059 41720365 -59660156 - AluSc SINE Alu -3 306 1 1526 171 27 104 chr15 41720365 41720496 -59660025 - Charlie4a DNA MER1_type -1757 204 64 1449 144 11 23 chr15 41720652 41720915 -59659606 - AluSx SINE Alu -16 296 37 234 229 21 0 chr15 41720948 41720996 -59659525 + MIR SINE MIR 106 154 -108 447 200 0 0 chr15 41721895 41721975 -59658546 + MLT1B LTR MaLR 15 94 -296 752 161 0 17 chr15 41721983 41722101 -59658420 + FLAM_A SINE Alu 8 123 -19 1897 153 0 13 chr15 41722106 41722420 -59658101 + AluSx SINE Alu 1 310 -2 1404 214 25 18 chr15 41722424 41722709 -59657812 + MLT1B LTR MaLR 104 390 0 195 306 51 10 chr15 41723542 41723640 -59656881 - MIR3 SINE MIR -24 184 83 406 182 149 25 chr15 41723642 41723763 -59656758 + MIR SINE MIR 119 254 -8 219 396 10 0 chr15 41723943 41724039 -59656482 - MIR3 SINE MIR -3 205 109 256 309 15 0 chr15 41725705 41725773 -59654748 + L2 LINE L2 3188 3256 -16 854 288 105 16 chr15 41725882 41726188 -59654333 - MER102b DNA MER1_type -7 334 2 213 344 174 26 chr15 41726345 41726615 -59653906 + L2 LINE L2 2329 2638 -676 208 237 136 0 chr15 41726801 41726860 -59653661 + L2 LINE L2 3237 3303 -10 2158 112 0 0 chr15 41726864 41727160 -59653361 - AluY SINE Alu -15 296 1 2226 86 7 7 chr15 41727750 41728051 -59652470 - AluSx SINE Alu -11 301 1 2146 217 46 37 chr15 41728170 41728732 -59651789 - MER74B LTR ERVL 0 622 56 1359 233 90 33 chr15 41729013 41729434 -59651087 + MLT2B1 LTR ERVL 1 445 -75 593 179 41 48 chr15 41729676 41729821 -59650700 + MER69 DNA AcHobo 2383 2526 0 349 230 58 35 chr15 41730036 41730123 -59650398 + MIR SINE MIR 56 144 -64 557 241 73 35 chr15 41730370 41730602 -59649919 - L1MC5 LINE L1 -56 7905 7665 1728 100 4 0 chr15 41730672 41730911 -59649610 + AluSq SINE Alu 41 280 -33 189 0 0 0 chr15 41730917 41730938 -59649583 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2048 118 0 0 chr15 41730994 41731290 -59649231 - AluSg SINE Alu -14 296 1 2089 107 0 23 chr15 41732288 41732597 -59647924 - AluSx SINE Alu -10 302 1 1632 146 46 17 chr15 41732655 41732957 -59647564 - AluSx SINE Alu -1 311 1 497 216 0 45 chr15 41732957 41733068 -59647453 - AluSg/x SINE Alu -20 292 187 3396 144 204 30 chr15 41733068 41733768 -59646753 - LTR12 LTR ERV1 0 826 5 2457 183 30 27 chr15 41733784 41734384 -59646137 - pTR5 LTR ERV1 -1094 1344 743 1120 141 0 45 chr15 41734384 41734583 -59645938 - AluJo SINE Alu -122 190 1 216 97 0 0 chr15 41734660 41734691 -59645830 + (TTC)n Simple_repeat Simple_repeat 3 33 0 1749 145 54 7 chr15 41734693 41734989 -59645532 - AluSx SINE Alu -2 310 1 228 35 0 0 chr15 41735141 41735170 -59645351 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1297 167 0 50 chr15 41735170 41735451 -59645070 - AluSx SINE Alu -32 280 14 243 0 0 0 chr15 41735455 41735482 -59645039 + (T)n Simple_repeat Simple_repeat 1 27 0 1842 117 52 7 chr15 41735507 41735797 -59644724 + AluSx SINE Alu 1 303 -9 1241 209 48 84 chr15 41735954 41736650 -59643871 - MER21B LTR ERV1 -125 738 1 1655 146 75 0 chr15 41736673 41736953 -59643568 + AluSx SINE Alu 1 301 -11 3661 122 80 16 chr15 41737422 41737997 -59642524 - LTR9 LTR ERV1 0 612 1 2220 89 3 13 chr15 41738501 41738804 -59641717 - AluSg SINE Alu -10 300 1 600 264 38 61 chr15 41738889 41739101 -59641420 + MIR SINE MIR 1 207 -55 1416 186 38 7 chr15 41739121 41739411 -59641110 - AluJb SINE Alu -13 299 1 243 239 269 37 chr15 41739416 41739612 -59640909 - L1ME4a LINE L1 -21 6100 5951 2118 121 0 9 chr15 41739612 41739927 -59640594 - AluSx SINE Alu 0 312 1 243 239 269 37 chr15 41739927 41740027 -59640494 - L1ME4a LINE L1 -170 5951 5735 358 198 18 36 chr15 41740154 41740265 -59640256 - L1ME4a LINE L1 -401 5720 5612 339 65 0 0 chr15 41742003 41742049 -59638472 + (TG)n Simple_repeat Simple_repeat 2 47 0 2039 200 10 45 chr15 41742203 41742687 -59637834 - MLT1C LTR MaLR 0 467 1 2086 115 0 29 chr15 41743819 41744133 -59636388 + AluSx SINE Alu 2 306 -6 223 278 56 28 chr15 41745759 41745831 -59634690 - L3 LINE CR1 -4 1573 1500 2029 117 3 3 chr15 41745847 41746137 -59634384 - AluSx SINE Alu -22 290 1 222 293 12 12 chr15 41746423 41746505 -59634016 + MIR SINE MIR 84 165 -97 293 304 83 24 chr15 41747772 41747833 -59632688 - MIR SINE MIR 0 262 206 1887 128 24 13 chr15 41747833 41748131 -59632390 - AluSq SINE Alu -12 301 1 293 304 83 24 chr15 41748131 41748237 -59632284 - MIR SINE MIR -56 206 85 240 224 0 17 chr15 41748568 41748626 -59631895 + CT-rich Low_complexity Low_complexity 2 58 0 21 36 0 0 chr15 41749037 41749065 -59631456 + AT_rich Low_complexity Low_complexity 1 28 0 780 283 69 12 chr15 41749421 41749551 -59630970 - MIR SINE MIR 0 262 141 1236 121 16 0 chr15 41749551 41749733 -59630788 - MER5A DNA MER1_type -4 185 1 780 283 69 12 chr15 41749733 41749849 -59630672 - MIR SINE MIR -121 141 2 331 286 92 74 chr15 41750586 41750803 -59629718 - L1ME4a LINE L1 -21 6100 5880 2240 93 0 10 chr15 41750830 41751130 -59629391 + AluSp SINE Alu 2 298 -15 2027 123 0 16 chr15 41752058 41752374 -59628147 - AluSx SINE Alu -1 311 1 391 270 0 0 chr15 41752379 41752468 -59628053 + L2 LINE L2 3225 3313 0 2290 93 0 0 chr15 41753434 41753736 -59626785 + AluSx SINE Alu 1 302 -10 251 198 54 90 chr15 41753736 41753847 -59626674 - L1MC4 LINE L1 -14 8028 7922 327 146 0 0 chr15 41753850 41753905 -59626616 + (TTCC)n Simple_repeat Simple_repeat 2 56 0 2788 231 53 56 chr15 41753956 41754367 -59626154 - L1MC4 LINE L1 -166 7876 7465 1871 124 3 24 chr15 41754367 41754682 -59625839 - AluSx SINE Alu 0 309 1 2788 231 53 56 chr15 41754682 41755319 -59625202 - L1MC4 LINE L1 -577 7465 6830 574 251 86 6 chr15 41755921 41756084 -59624437 - MER5B DNA MER1_type -2 176 1 1597 88 5 0 chr15 41756097 41756312 -59624209 + AluSg1 SINE Alu 1 216 -93 412 286 11 0 chr15 41756312 41756403 -59624118 - MIR3 SINE MIR -25 183 92 488 308 38 27 chr15 41756450 41756635 -59623886 + MER5A DNA MER1_type 1 187 -2 1631 173 3 25 chr15 41756751 41757069 -59623452 - AluJb SINE Alu -1 311 1 336 284 7 92 chr15 41757174 41757315 -59623206 - MER58A DNA MER1_type 0 129 1 1340 263 47 32 chr15 41757349 41757591 -59622930 + ERVL LTR ERVL 1688 1940 -3056 2215 80 10 10 chr15 41757591 41757890 -59622631 + AluSx SINE Alu 1 299 -13 1340 263 47 32 chr15 41757890 41758054 -59622467 + ERVL LTR ERVL 1940 2100 -2896 461 245 19 0 chr15 41758103 41758209 -59622312 - ERVL LTR ERVL -2597 3167 3060 197 266 0 96 chr15 41758211 41758305 -59622216 + L3 LINE CR1 126 210 -1367 969 321 13 13 chr15 41758305 41758623 -59621898 - ERVL LTR ERVL -2072 2924 2607 1627 305 26 67 chr15 41758628 41759707 -59620814 + ERVL LTR ERVL 4428 4979 -17 690 253 40 6 chr15 41759725 41759899 -59620622 + LTR16B LTR ERVL 1 180 -284 683 212 133 0 chr15 41759910 41760061 -59620460 - MER45A DNA AcHobo -7 171 1 432 332 78 0 chr15 41760098 41760315 -59620206 + LTR16B LTR ERVL 231 464 0 2095 99 20 3 chr15 41760622 41760925 -59619596 + AluSp SINE Alu 1 308 -5 11312 61 0 13 chr15 41760976 41762841 -59617680 + L1PA6 LINE L1 3903 5773 -381 2044 85 4 0 chr15 41762841 41763111 -59617410 + AluY SINE Alu 35 305 -6 11312 61 0 13 chr15 41763111 41763489 -59617032 + L1PA6 LINE L1 5773 6154 0 772 100 7 100 chr15 41763540 41763624 -59616897 - MSTB1 LTR MaLR -305 127 60 1848 153 3 0 chr15 41763624 41763912 -59616609 - AluSx SINE Alu -21 291 3 772 100 7 100 chr15 41763912 41763967 -59616554 - MSTB1 LTR MaLR -372 60 1 4983 126 26 97 chr15 41763967 41764829 -59615692 - L1M4c LINE L1 -4452 1932 1011 1712 141 31 10 chr15 41764829 41765119 -59615402 - AluSx SINE Alu -16 296 1 4983 126 26 97 chr15 41765119 41765244 -59615277 - L1M4c LINE L1 -5373 1011 1032 366 236 209 0 chr15 41765244 41765354 -59615167 - FLAM_A SINE Alu 0 133 1 4983 126 26 97 chr15 41765354 41765500 -59615021 - L1M4c LINE L1 -5351 1033 878 1126 112 41 6 chr15 41765614 41765783 -59614738 - AluSx SINE Alu -137 175 1 384 271 23 31 chr15 41765783 41765912 -59614609 - L1M4c LINE L1 -5308 1076 949 366 236 209 0 chr15 41765912 41766022 -59614499 - FLAM_A SINE Alu 0 133 1 4452 148 22 12 chr15 41766022 41766781 -59613740 - L1M4c LINE L1 -5353 1031 265 1398 175 0 103 chr15 41766788 41766942 -59613579 - AluJb SINE Alu -25 287 181 2006 147 0 0 chr15 41766942 41767248 -59613273 - AluSx SINE Alu -6 306 1 1398 175 0 103 chr15 41767248 41767413 -59613108 - AluJb SINE Alu -131 181 1 1752 171 7 3 chr15 41767616 41767925 -59612596 - AluJb SINE Alu -2 310 1 1781 136 3 44 chr15 41768151 41768473 -59612048 - AluSx SINE Alu 0 310 1 299 258 45 0 chr15 41768935 41768956 -59611565 + LTR67 LTR ERVL 461 480 -77 2124 110 3 0 chr15 41768956 41769256 -59611265 - AluSg1 SINE Alu -8 301 1 299 258 45 0 chr15 41769256 41769323 -59611198 + LTR67 LTR ERVL 480 553 -4 2728 85 3 0 chr15 41769535 41769889 -59610632 + THE1A LTR MaLR 1 355 0 271 314 0 66 chr15 41770467 41770588 -59609933 + L2 LINE L2 3160 3272 0 255 170 0 0 chr15 41770761 41770808 -59609713 + CT-rich Low_complexity Low_complexity 2 48 0 2117 87 7 7 chr15 41770808 41771094 -59609427 - AluSg SINE Alu -24 286 1 424 220 76 138 chr15 41771256 41771396 -59609125 + MER20B DNA MER1_type 36 150 -633 1566 173 0 69 chr15 41771396 41771731 -59608790 + AluJo SINE Alu 1 312 0 424 220 76 138 chr15 41771731 41771881 -59608640 + MER20B DNA MER1_type 150 308 -475 2078 115 0 29 chr15 41772769 41773082 -59607439 + AluSx SINE Alu 2 305 -7 223 278 56 28 chr15 41774707 41774779 -59605742 - L3 LINE CR1 -4 1573 1500 2029 117 3 3 chr15 41774795 41775085 -59605436 - AluSx SINE Alu -22 290 1 1730 170 26 7 chr15 41775253 41775559 -59604962 + AluJo SINE Alu 1 312 0 757 237 7 75 chr15 41775615 41775894 -59604627 - L2 LINE L2 0 3313 3054 275 336 56 0 chr15 41775904 41776011 -59604510 - L3 LINE CR1 -127 1450 1338 984 307 113 38 chr15 41776018 41776575 -59603946 - L3 LINE CR1 -165 1412 814 34 0 0 0 chr15 41776593 41776627 -59603894 + AT_rich Low_complexity Low_complexity 1 34 0 325 336 229 29 chr15 41777112 41777354 -59603167 - L3 LINE CR1 -762 815 623 2276 97 0 0 chr15 41777354 41777653 -59602868 - AluSx SINE Alu -13 299 1 325 336 229 29 chr15 41777653 41777755 -59602766 - L3 LINE CR1 -954 623 402 1200 269 113 26 chr15 41777783 41778218 -59602303 + L2 LINE L2 2798 3268 -4 749 176 13 39 chr15 41778218 41778371 -59602150 + MIR SINE MIR 114 262 0 216 203 51 51 chr15 41778398 41778457 -59602064 - L2 LINE L2 -17 3296 3238 309 109 0 0 chr15 41778492 41778538 -59601983 + (TCCCC)n Simple_repeat Simple_repeat 5 50 0 1374 146 4 0 chr15 41778640 41778866 -59601655 + AluSg/x SINE Alu 84 310 -2 306 243 103 9 chr15 41778866 41778973 -59601548 + MER20B DNA MER1_type 406 522 -261 1898 134 0 16 chr15 41779036 41779341 -59601180 + AluSx SINE Alu 1 300 -12 268 188 0 0 chr15 41779484 41779532 -59600989 + MER20B DNA MER1_type 735 782 -1 1546 175 3 18 chr15 41780495 41780781 -59599740 - AluJb SINE Alu -30 282 1 1462 136 65 39 chr15 41780992 41781271 -59599250 + AluJo SINE Alu 1 286 -26 2051 125 3 0 chr15 41782811 41783108 -59597413 + AluSx SINE Alu 1 298 -14 428 269 67 8 chr15 41783770 41783904 -59596617 - L1MC4 LINE L1 0 8042 7901 250 176 29 0 chr15 41783904 41783958 -59596563 + (TATG)n Simple_repeat Simple_repeat 2 60 -11 2084 116 0 22 chr15 41783958 41784278 -59596243 - AluSq SINE Alu 0 313 1 250 176 29 0 chr15 41784278 41784291 -59596230 + (TATG)n Simple_repeat Simple_repeat 60 71 0 731 269 31 22 chr15 41784292 41784658 -59595863 - L1MD3 LINE L1 -204 7791 7342 189 0 0 0 chr15 41784658 41784679 -59595842 + (TC)n Simple_repeat Simple_repeat 2 22 0 731 269 31 22 chr15 41784679 41784751 -59595770 - L1MD3 LINE L1 -653 7342 7272 235 317 29 0 chr15 41785017 41785121 -59595400 - L1MD3 LINE L1 -2013 5795 5689 424 28 19 271 chr15 41785131 41785238 -59595283 - MADE1 DNA Mariner 0 80 1 1594 180 13 36 chr15 41785905 41786211 -59594310 - AluJo SINE Alu -13 299 1 25 0 0 0 chr15 41786213 41786238 -59594283 + AT_rich Low_complexity Low_complexity 1 25 0 2092 107 0 0 chr15 41786238 41786519 -59594002 - AluSx SINE Alu -31 281 1 261 264 19 0 chr15 41786612 41786665 -59593856 + MER58 DNA MER1_type 7 60 -2360 * 350 143 286 10 chr15 41786664 41786762 -59593759 + MER58 DNA MER1_type 2296 2420 0 1752 133 35 3 chr15 41786881 41787167 -59593354 - AluSg SINE Alu -15 295 1 1800 133 54 0 chr15 41787197 41787475 -59593046 - AluSx SINE Alu -15 297 5 244 268 91 50 chr15 41787501 41787699 -59592822 + L1MC5 LINE L1 7615 7820 -141 228 86 0 0 chr15 41787799 41787834 -59592687 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 278 256 0 0 chr15 41787857 41787943 -59592578 + (TA)n Simple_repeat Simple_repeat 2 87 0 2343 86 3 3 chr15 41788567 41788880 -59591641 - AluSp SINE Alu 0 313 1 2122 113 0 7 chr15 41789485 41789787 -59590734 - AluSx SINE Alu -12 300 1 273 279 49 0 chr15 41789823 41789884 -59590637 + MIR SINE MIR 11 74 -188 383 204 150 84 chr15 41789946 41790113 -59590408 + MIR SINE MIR 72 249 -13 1838 120 57 7 chr15 41790150 41790433 -59590088 - AluSg SINE Alu -13 297 1 1174 157 27 49 chr15 41790512 41790735 -59589786 + MER20 DNA MER1_type 1 218 -1 190 253 36 48 chr15 41790826 41790909 -59589612 - MIR3 SINE MIR -113 95 14 1623 258 46 2 chr15 41791552 41791986 -59588535 + LTR16B LTR ERVL 5 457 -7 2444 55 0 0 chr15 41792272 41792564 -59587957 - AluY SINE Alu -15 296 5 471 257 0 18 chr15 41792680 41792789 -59587732 - L2 LINE L2 0 3313 3207 651 215 23 0 chr15 41792973 41793103 -59587418 - MER94 DNA DNA 0 134 2 2033 131 0 10 chr15 41794176 41794488 -59586033 - AluSx SINE Alu -3 309 1 1639 123 70 42 chr15 41794909 41795194 -59585327 - AluSx SINE Alu -19 293 1 379 269 129 26 chr15 41795884 41796077 -59584444 + MIR SINE MIR 21 233 -29 365 336 25 0 chr15 41796306 41796425 -59584096 + MIR SINE MIR 2 123 -139 972 189 0 0 chr15 41796425 41796594 -59583927 - AluSg/x SINE Alu -10 302 134 543 92 0 0 chr15 41796603 41796690 -59583831 + (CCTG)n Simple_repeat Simple_repeat 2 88 0 1445 145 40 0 chr15 41796690 41796928 -59583593 - AluSq SINE Alu -7 306 56 546 211 8 17 chr15 41796928 41797170 -59583351 + CT-rich Low_complexity Low_complexity 1 239 0 212 163 0 20 chr15 41797195 41797244 -59583277 + CT-rich Low_complexity Low_complexity 1 48 0 357 281 0 11 chr15 41797251 41797263 -59583258 + MIR SINE MIR 109 120 -142 1477 188 31 3 chr15 41797263 41797551 -59582970 - AluJo SINE Alu 0 312 17 357 281 0 11 chr15 41797551 41797627 -59582894 + MIR SINE MIR 120 196 -66 1816 102 6 80 chr15 41797903 41798217 -59582304 + AluSx SINE Alu 1 291 -21 888 251 21 0 chr15 41798538 41798729 -59581792 - MLT1K LTR MaLR -3 585 391 1952 122 14 3 chr15 41798731 41799026 -59581495 - AluSx SINE Alu -14 298 1 473 193 9 37 chr15 41799216 41799325 -59581196 + L2 LINE L2 3207 3312 -1 248 266 62 62 chr15 41799443 41799556 -59580965 - L2 LINE L2 -258 3014 2902 855 226 33 24 chr15 41799640 41799852 -59580669 + LTR33 LTR ERVL 19 232 -289 674 174 38 136 chr15 41799853 41799894 -59580627 + MER5C DNA MER1_type 62 105 -219 2059 138 0 3 chr15 41799894 41800206 -59580315 + AluSx SINE Alu 1 311 -1 674 174 38 136 chr15 41800206 41800270 -59580251 + MER5C DNA MER1_type 105 174 -150 1983 140 46 17 chr15 41800270 41800619 -59579902 + MER46B DNA MER2_type 3 236 0 674 174 38 136 chr15 41800619 41800799 -59579722 + MER5C DNA MER1_type 174 320 -4 1155 204 23 9 chr15 41801303 41801523 -59578998 + MER58A DNA MER1_type 2 224 0 1600 217 21 24 chr15 41802923 41803296 -59577225 + MLT1A2 LTR MaLR 1 372 -2 22 0 0 0 chr15 41803603 41803625 -59576896 + AT_rich Low_complexity Low_complexity 1 22 0 404 325 84 10 chr15 41803665 41803989 -59576532 - MLT1K LTR MaLR -114 474 81 200 262 229 16 chr15 41804064 41804186 -59576335 - L2 LINE L2 0 3272 3125 342 241 0 64 chr15 41805002 41805189 -59575332 + C-rich Low_complexity Low_complexity 5 179 0 22 0 0 0 chr15 41805201 41805223 -59575298 + GC_rich Low_complexity Low_complexity 1 22 0 481 302 109 5 chr15 41805709 41805901 -59574620 - MIR SINE MIR -2 260 49 269 290 19 9 chr15 41806003 41806110 -59574411 + CT-rich Low_complexity Low_complexity 1 108 0 1877 115 3 48 chr15 41806530 41806700 -59573821 - AluSx SINE Alu -12 300 149 1767 113 55 52 chr15 41806700 41807009 -59573512 - AluSg SINE Alu 0 310 1 1877 115 3 48 chr15 41807009 41807152 -59573369 - AluSx SINE Alu -163 149 1 192 308 96 19 chr15 41807392 41807496 -59573025 - MER5B DNA MER1_type -3 175 64 1342 344 36 21 chr15 41807676 41808036 -59572485 + HERVL LTR ERVL 3724 4077 -1577 4489 98 31 0 chr15 41808036 41808650 -59571871 - MER41B LTR ERV1 0 635 3 1342 344 36 21 chr15 41808650 41809106 -59571415 + HERVL LTR ERVL 4077 4565 -1089 204 185 62 74 chr15 41809572 41809653 -59570868 + MIR SINE MIR 183 262 0 417 224 24 48 chr15 41809813 41809938 -59570583 - L1MC4 LINE L1 0 8042 7921 2273 82 7 3 chr15 41809946 41810239 -59570282 - AluSq SINE Alu -19 294 1 255 161 11 23 chr15 41810288 41810375 -59570146 + (TA)n Simple_repeat Simple_repeat 2 87 0 939 263 43 40 chr15 41810488 41810838 -59569683 - L1MC4 LINE L1 -225 7817 7467 227 287 98 18 chr15 41811207 41811345 -59569176 - MIR SINE MIR -93 169 20 2553 80 3 0 chr15 41811483 41811794 -59568727 - AluSp SINE Alu -1 312 1 540 238 32 45 chr15 41811893 41812109 -59568412 - MLT1B LTR MaLR -165 263 1 2168 228 91 24 chr15 41812134 41812752 -59567769 - L1MC4 LINE L1 -524 7518 6860 397 191 21 0 chr15 41812752 41812846 -59567675 - L1MC4 LINE L1 -950 7092 6997 577 149 14 28 chr15 41813107 41813248 -59567273 + CT-rich Low_complexity Low_complexity 4 142 0 1898 110 61 0 chr15 41814368 41814632 -59565889 - AluSx SINE Alu -19 293 14 1536 233 12 0 chr15 41814686 41815016 -59565505 - MER58B DNA MER1_type 0 341 8 1077 152 94 0 chr15 41816199 41816390 -59564131 + L1PA16 LINE L1 5434 5642 -524 2034 136 46 15 chr15 41816391 41816715 -59563806 + MSTB LTR MaLR 1 334 -92 3133 141 28 20 chr15 41816719 41817257 -59563264 + L1PA16 LINE L1 5624 6165 -1 191 216 0 0 chr15 41817420 41817457 -59563064 - MIR3 SINE MIR -49 159 123 642 277 135 30 chr15 41817474 41817911 -59562610 + MER90 LTR ERV1 78 561 -14 5916 116 103 16 chr15 41818635 41819648 -59560873 + MER52C LTR ERV1 3 1103 -175 2477 55 0 7 chr15 41819689 41819979 -59560542 - AluY SINE Alu -23 288 1 283 327 9 19 chr15 41820212 41820319 -59560202 + G-rich Low_complexity Low_complexity 2 107 0 349 279 22 45 chr15 41820409 41820588 -59559933 + GA-rich Low_complexity Low_complexity 1 175 0 1093 63 0 53 chr15 41820802 41820859 -59559662 + (TTCC)n Simple_repeat Simple_repeat 1 234 0 1093 63 0 53 chr15 41820859 41821049 -59559472 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 561 267 91 24 chr15 41821109 41821319 -59559202 - L2 LINE L2 -17 3296 3073 185 75 75 0 chr15 41821628 41821681 -59558840 + (TA)n Simple_repeat Simple_repeat 1 57 0 527 143 0 38 chr15 41822026 41822131 -59558390 - L1PA11 LINE L1 -3 6171 6071 228 143 41 20 chr15 41823619 41823668 -59556853 - MSTC LTR MaLR 0 428 379 468 306 47 30 chr15 41824182 41824342 -59556179 + MLT1J2 LTR MaLR 1 168 -282 1598 144 125 44 chr15 41824342 41824703 -59555818 + MLT1B LTR MaLR 1 390 0 468 306 47 30 chr15 41824703 41824777 -59555744 + MLT1J2 LTR MaLR 168 239 -211 501 288 49 6 chr15 41825643 41825806 -59554715 - MER117 DNA MER1_type -26 171 2 403 119 0 0 chr15 41826088 41826155 -59554366 - Alu SINE Alu -12 300 234 297 0 0 0 chr15 41826161 41826187 -59554334 + (TA)n Simple_repeat Simple_repeat 1 59 0 297 0 0 0 chr15 41826187 41826220 -59554301 + (TA)n Simple_repeat Simple_repeat 1 33 0 2071 153 3 3 chr15 41826303 41826611 -59553910 + AluJb SINE Alu 1 308 -4 2124 133 0 3 chr15 41826741 41827035 -59553486 - AluSx SINE Alu -19 293 1 224 182 0 0 chr15 41828798 41828842 -59551679 - L2 LINE L2 -1904 1410 1367 2198 107 10 3 chr15 41830097 41830397 -59550124 + AluSp SINE Alu 1 302 -11 1468 214 104 24 chr15 41830454 41830875 -59549646 + MSTB2 LTR MaLR 3 457 0 1754 219 87 57 chr15 41832064 41832563 -59547958 + MLT1E LTR MaLR 2 522 -71 2467 86 3 0 chr15 41832563 41832867 -59547654 - AluSc SINE Alu -4 305 1 1754 219 87 57 chr15 41832867 41832942 -59547579 + MLT1E LTR MaLR 522 593 0 371 276 118 8 chr15 41833704 41833831 -59546690 + MIR SINE MIR 11 151 -111 271 329 37 19 chr15 41833953 41834114 -59546407 - L2 LINE L2 -558 2756 2593 3195 193 63 19 chr15 41834146 41834872 -59545649 - L1MC4 LINE L1 -8 8034 7277 213 213 295 0 chr15 41835080 41835141 -59545380 - MIR3 SINE MIR -49 159 81 2076 181 16 5 chr15 41835259 41835646 -59544875 + L1MC1 LINE L1 5834 6224 -109 768 120 98 15 chr15 41835688 41835821 -59544700 + L1MC1 LINE L1 6190 6333 0 1363 100 4 1 chr15 41835832 41836094 -59544427 + AluSx SINE Alu 2 302 0 249 275 0 14 chr15 41837103 41837172 -59543349 + GA-rich Low_complexity Low_complexity 3 70 0 2789 135 34 46 chr15 41837422 41837918 -59542603 - LTR42 LTR ERVL 0 495 6 565 221 13 57 chr15 41838123 41838281 -59542240 + MER5B DNA MER1_type 4 154 -24 4724 182 63 34 chr15 41838982 41839506 -59541015 - MER45B DNA AcHobo -551 1030 523 1645 93 19 0 chr15 41839506 41839720 -59540801 - AluSg/x SINE Alu -18 292 75 4724 182 63 34 chr15 41839720 41840196 -59540325 - MER45B DNA AcHobo -1058 523 1 21 36 0 0 chr15 41840256 41840284 -59540237 + AT_rich Low_complexity Low_complexity 1 28 0 581 275 23 1 chr15 41843012 41843189 -59537332 + MIR SINE MIR 34 212 -50 443 188 23 128 chr15 41843704 41843793 -59536728 - Charlie8 DNA MER1_type -2209 208 136 2146 127 7 0 chr15 41843793 41844084 -59536437 - AluSx SINE Alu -19 293 1 443 188 23 128 chr15 41844084 41844127 -59536394 - Charlie8 DNA MER1_type -2281 136 90 1075 243 78 10 chr15 41844736 41845045 -59535476 - MER46C DNA MER2_type -1 337 8 399 230 0 0 chr15 41845586 41845699 -59534822 + (TGGA)n Simple_repeat Simple_repeat 2 114 0 757 204 104 23 chr15 41848223 41848443 -59532078 - MLT1C LTR MaLR -224 243 6 234 91 0 0 chr15 41849236 41849269 -59531252 + (CA)n Simple_repeat Simple_repeat 2 34 0 1921 145 34 90 chr15 41849359 41849458 -59531063 + MLT1B LTR MaLR 1 104 -286 4950 80 11 3 chr15 41849458 41850106 -59530415 + L1PA11 LINE L1 5522 6174 0 1921 145 34 90 chr15 41850106 41850419 -59530102 + MLT1B LTR MaLR 104 390 0 259 183 9 0 chr15 41850442 41850502 -59530019 + MIR SINE MIR 93 146 -62 23 0 0 0 chr15 41850537 41850560 -59529961 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr15 41850567 41850591 -59529930 + AT_rich Low_complexity Low_complexity 1 24 0 867 173 19 12 chr15 41851189 41851351 -59529170 + MER20 DNA MER1_type 57 219 0 2102 179 31 20 chr15 41852537 41852708 -59527813 + MSTD LTR MaLR 1 169 -227 2547 75 0 0 chr15 41852708 41853014 -59527507 - AluY SINE Alu -4 307 2 2102 179 31 20 chr15 41853014 41853234 -59527287 + MSTD LTR MaLR 169 396 0 180 225 0 0 chr15 41853936 41853976 -59526545 + MIR SINE MIR 34 73 -135 258 294 147 0 chr15 41854230 41854339 -59526182 + L2 LINE L2 3189 3313 0 514 191 147 45 chr15 41855324 41855481 -59525040 + MIR SINE MIR 1 173 -89 722 251 208 55 chr15 41855483 41855954 -59524567 - MLT1H LTR MaLR -2 547 5 2374 166 85 15 chr15 41856589 41857284 -59523237 - L1MA9 LINE L1 -524 5788 5043 2550 141 43 47 chr15 41857288 41857738 -59522783 + L1MA9 LINE L1 5777 6226 -86 2321 80 3 3 chr15 41857738 41858025 -59522496 + AluSp SINE Alu 1 287 -26 2550 141 43 47 chr15 41858025 41858112 -59522409 + L1MA9 LINE L1 6226 6312 0 598 306 29 8 chr15 41858124 41858366 -59522155 - L1ME4a LINE L1 -259 5862 5616 2194 246 62 64 chr15 41858575 41859642 -59520879 - L1ME3A LINE L1 -37 6133 5076 654 168 106 55 chr15 41859647 41859962 -59520559 - MLT1A1 LTR MaLR 0 365 4 526 317 15 19 chr15 41859976 41860247 -59520274 - L1ME3A LINE L1 -1089 5057 4788 823 210 54 0 chr15 41860342 41860509 -59520012 - L1M4 LINE L1 -503 5671 5496 33557 69 8 11 chr15 41860522 41864729 -59515792 - L1PA6 LINE L1 -11 6143 1956 2456 74 0 0 chr15 41864729 41865026 -59515495 - AluY SINE Alu -14 297 1 33557 69 8 11 chr15 41865026 41866094 -59514427 - L1PA6 LINE L1 -4198 1956 887 567 211 61 0 chr15 41866161 41866275 -59514246 - MLT1A1 LTR MaLR -77 288 168 1988 162 47 11 chr15 41866299 41866843 -59513678 - L1M4 LINE L1 -699 5475 4908 214 309 127 64 chr15 41867224 41867366 -59513155 - MER5A DNA MER1_type -28 161 1 196 333 76 0 chr15 41869508 41869574 -59510947 + L2 LINE L2 3221 3291 -22 248 298 125 0 chr15 41870866 41870970 -59509551 - L2 LINE L2 -9 3304 3188 420 269 176 0 chr15 41871643 41871825 -59508696 - L1ME4a LINE L1 -38 6083 5870 650 13 13 0 chr15 41871949 41872028 -59508493 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 225 0 0 0 chr15 41872405 41872430 -59508091 + (CA)n Simple_repeat Simple_repeat 2 26 0 488 207 111 7 chr15 41872432 41872567 -59507954 - LTR16A LTR ERVL -1 449 301 735 325 57 19 chr15 41872873 41873385 -59507136 - HERV16 LTR ERVL -75 5344 4788 345 260 12 83 chr15 41873566 41873735 -59506786 - HERV16 LTR ERVL -606 4390 4234 368 350 18 0 chr15 41873775 41873938 -59506583 + ERVL LTR ERVL 3375 3540 -2224 279 315 36 0 chr15 41873926 41874037 -59506484 - HERV16 LTR ERVL -2300 3354 3240 * 692 315 20 8 chr15 41874119 41874370 -59506151 - HERV16 LTR ERVL -2385 3269 3016 827 211 117 0 chr15 41874397 41874577 -59505944 + MER3 DNA MER1_type 9 209 0 1077 317 95 6 chr15 41874582 41875119 -59505402 - HERV16 LTR ERVL -2482 3003 2419 946 216 22 11 chr15 41875150 41875331 -59505190 + MER58A DNA MER1_type 42 224 0 2487 87 3 18 chr15 41875354 41875686 -59504835 + L1PA3 LINE L1 5829 6155 0 1808 151 3 55 chr15 41875748 41876059 -59504462 + AluJo SINE Alu 1 295 -17 3719 276 77 43 chr15 41876119 41877785 -59502736 - HERV16 LTR ERVL -2847 2149 353 2340 88 13 0 chr15 41877785 41878090 -59502431 - AluY SINE Alu -2 309 1 3719 276 77 43 chr15 41878090 41878239 -59502282 - HERV16 LTR ERVL -4643 353 210 726 237 133 0 chr15 41878775 41878986 -59501535 - MIR SINE MIR -21 241 3 1996 170 0 0 chr15 41879145 41879457 -59501064 + AluSx SINE Alu 1 312 0 276 272 174 11 chr15 41880497 41880589 -59499932 + L2 LINE L2 3157 3263 -9 249 309 45 0 chr15 41880812 41880922 -59499599 - L1ME4a LINE L1 -201 5920 5806 669 223 5 82 chr15 41880952 41881172 -59499349 + LTR33 LTR ERVL 13 215 -306 374 240 10 10 chr15 41881422 41881526 -59498995 - L1ME4a LINE L1 -401 5720 5617 2826 103 78 5 chr15 41881778 41882175 -59498346 - MSTA LTR MaLR -2 426 1 772 205 53 0 chr15 41882434 41882624 -59497897 - L1ME LINE L1 -3714 2366 2167 565 119 158 0 chr15 41882620 41882721 -59497800 - L1MA9 LINE L1 -170 6142 6026 * 901 166 53 81 chr15 41882658 41882905 -59497616 + L1MA9 LINE L1 6073 6312 0 1513 279 42 63 chr15 41883408 41883795 -59496726 - L1ME LINE L1 -5402 668 299 2915 9 0 6 chr15 41883795 41884115 -59496406 - AluYb8 SINE Alu 0 318 1 1513 279 42 63 chr15 41884115 41884398 -59496123 - L1ME LINE L1 -5771 299 12 358 323 0 0 chr15 41884521 41884620 -59495901 - MIR3 SINE MIR -16 192 94 693 255 21 80 chr15 41886800 41887215 -59493306 + MLT1H LTR MaLR 50 409 0 409 260 16 8 chr15 41887496 41887619 -59492902 + LTR67 LTR ERVL 434 557 0 450 252 200 14 chr15 41887737 41887947 -59492574 + MIR SINE MIR 4 252 -10 250 67 44 0 chr15 41887965 41888010 -59492511 + (ATG)n Simple_repeat Simple_repeat 3 49 0 183 186 23 47 chr15 41888047 41888090 -59492431 - MIR SINE MIR -163 99 58 283 250 71 62 chr15 41889448 41889560 -59490961 + MIR SINE MIR 94 206 -56 881 169 44 16 chr15 41890606 41890789 -59489732 + MER5A DNA MER1_type 2 189 0 781 296 21 4 chr15 41890789 41891029 -59489492 + LTR16C LTR ERVL 248 491 0 273 326 67 4 chr15 41891074 41891202 -59489319 - MIR SINE MIR -43 165 28 488 325 39 7 chr15 41891243 41891397 -59489124 + MIR SINE MIR 11 169 -93 236 274 14 14 chr15 41891465 41891538 -59488983 - MIR SINE MIR -71 191 119 209 385 22 0 chr15 41891828 41891919 -59488602 - MIR3 SINE MIR -24 184 92 1111 231 172 42 chr15 41892511 41893046 -59487475 - LTR48B LTR ERV1 0 644 5 2060 97 52 3 chr15 41893404 41893693 -59486828 - AluSq SINE Alu -10 303 1 267 283 9 9 chr15 41894510 41894616 -59485905 + GA-rich Low_complexity Low_complexity 1 106 0 189 0 0 0 chr15 41895024 41895045 -59485476 + (T)n Simple_repeat Simple_repeat 1 21 0 2681 39 0 0 chr15 41895100 41895406 -59485115 + AluY SINE Alu 1 306 -5 482 284 38 43 chr15 41895627 41895838 -59484683 - LTR67 LTR ERVL -7 550 341 527 242 56 6 chr15 41896178 41896339 -59484182 - L2 LINE L2 -519 2795 2627 257 209 81 12 chr15 41896395 41896481 -59484040 + L1MC4 LINE L1 6612 6703 -1339 819 153 0 0 chr15 41896510 41896628 -59483893 - FLAM_C SINE Alu -15 118 1 51 65 0 0 chr15 41897914 41898007 -59482514 + AT_rich Low_complexity Low_complexity 1 93 0 21 57 0 0 chr15 41898140 41898175 -59482346 + AT_rich Low_complexity Low_complexity 1 35 0 881 268 112 49 chr15 41898488 41898993 -59481528 + L2 LINE L2 2548 3084 -229 1102 219 54 0 chr15 41899083 41899325 -59481196 - MIR SINE MIR 0 262 8 224 282 106 0 chr15 41899307 41899392 -59481129 + L2 LINE L2 3136 3229 -43 * 423 0 0 0 chr15 41899937 41899984 -59480537 + (TC)n Simple_repeat Simple_repeat 2 48 0 560 302 91 89 chr15 41900135 41900983 -59479538 - L2 LINE L2 -3 3269 2404 234 0 0 0 chr15 41900983 41901009 -59479512 + (TG)n Simple_repeat Simple_repeat 1 26 0 560 302 91 89 chr15 41901009 41901711 -59478810 - L2 LINE L2 -868 2404 1705 206 79 0 53 chr15 41901711 41901749 -59478772 + (TCCCC)n Simple_repeat Simple_repeat 3 38 0 25 65 0 0 chr15 41903965 41904011 -59476510 + AT_rich Low_complexity Low_complexity 1 46 0 207 150 50 0 chr15 41904512 41904572 -59475949 + CT-rich Low_complexity Low_complexity 2 64 0 323 211 260 16 chr15 41904630 41904753 -59475768 - LTR33 LTR ERVL -7 514 362 935 243 171 47 chr15 41904786 41905118 -59475403 + LTR33 LTR ERVL 67 459 -62 1577 168 56 3 chr15 41905118 41905252 -59475269 + AluJo SINE Alu 1 127 -185 1921 129 33 0 chr15 41905252 41905554 -59474967 + AluSx SINE Alu 1 312 0 1577 168 56 3 chr15 41905554 41905705 -59474816 + AluJo SINE Alu 127 301 -11 935 243 171 47 chr15 41905705 41905776 -59474745 + LTR33 LTR ERVL 459 520 -1 642 278 129 85 chr15 41905776 41906082 -59474439 - L1MEd LINE L1 -4903 1216 925 2175 132 0 0 chr15 41906082 41906386 -59474135 - AluSx SINE Alu -8 304 1 642 278 129 85 chr15 41906386 41907182 -59473339 - L1MEd LINE L1 -5194 925 66 516 329 12 0 chr15 41907333 41907497 -59473024 + MIR SINE MIR 4 169 -93 947 240 58 16 chr15 41907498 41907756 -59472765 - MLT1C LTR MaLR -8 459 191 441 213 75 0 chr15 41907766 41907860 -59472661 + LTR33-int LTR ERVL 333 433 -3123 1136 247 87 74 chr15 41907877 41908203 -59472318 - L1MC4a LINE L1 -1340 6468 6148 2328 103 0 6 chr15 41908203 41908515 -59472006 - AluSx SINE Alu -2 310 1 1136 247 87 74 chr15 41908515 41908704 -59471817 - L1MC4a LINE L1 -1660 6148 5943 429 20 0 0 chr15 41908704 41908754 -59471767 + (TA)n Simple_repeat Simple_repeat 2 51 0 1136 247 87 74 chr15 41908754 41908779 -59471742 - L1MC4a LINE L1 -1865 5943 5920 433 199 237 0 chr15 41908940 41909071 -59471450 - MER5A DNA MER1_type -12 177 16 2414 48 52 0 chr15 41911005 41911295 -59469226 - AluY SINE Alu -6 305 1 21 0 0 0 chr15 41911295 41911316 -59469205 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 41912396 41912417 -59468104 + AT_rich Low_complexity Low_complexity 1 21 0 458 289 46 55 chr15 41912755 41912973 -59467548 + LTR16C LTR ERVL 187 402 -89 295 342 84 61 chr15 41913188 41913451 -59467070 - L2 LINE L2 -8 3264 2996 670 328 81 36 chr15 41914548 41915020 -59465501 - LTR33 LTR ERVL -9 512 20 34 84 0 0 chr15 41915217 41915300 -59465221 + AT_rich Low_complexity Low_complexity 1 83 0 2365 156 6 6 chr15 41915440 41915805 -59464716 - MLT1A1 LTR MaLR 0 365 1 708 264 62 10 chr15 41915848 41916056 -59464465 - MIR SINE MIR -38 224 6 214 297 16 0 chr15 41916439 41916503 -59464018 - L2 LINE L2 -5 3308 3244 412 323 31 24 chr15 41916800 41916927 -59463594 + MIR3 SINE MIR 3 130 -78 436 265 10 0 chr15 41917122 41917224 -59463297 + MER5A DNA MER1_type 4 106 -83 199 263 83 75 chr15 41917432 41917565 -59462956 - L2 LINE L2 -182 3090 2957 354 67 0 0 chr15 41918025 41918070 -59462451 + MSTC LTR MaLR 2 46 -382 18691 157 42 11 chr15 41918070 41919736 -59460785 + L1M1 LINE L1 17 1630 -5935 243 0 0 0 chr15 41919736 41919763 -59460758 + (GA)n Simple_repeat Simple_repeat 2 28 0 18691 157 42 11 chr15 41919763 41920064 -59460457 + L1M1 LINE L1 1630 1920 -5645 2729 98 56 0 chr15 41920064 41920421 -59460100 - MER51B LTR ERV1 0 377 1 18691 157 42 11 chr15 41920421 41921639 -59458882 + L1M1 LINE L1 1920 3301 -4264 6495 95 8 12 chr15 41921655 41922031 -59458490 - L1PB1 LINE L1 0 6151 5775 2336 74 0 43 chr15 41922031 41922356 -59458165 - AluY SINE Alu 0 311 1 6495 95 8 12 chr15 41922356 41922988 -59457533 - L1PB1 LINE L1 -376 5775 5149 3025 113 2 2 chr15 41922995 41923404 -59457117 + LTR3 LTR ERVK 23 431 -1 12779 217 26 15 chr15 41923411 41926485 -59454036 - L1 LINE L1 -866 5280 2172 6281 66 0 4 chr15 41926466 41927254 -59453267 - L1PA6 LINE L1 0 6870 6086 * 10260 88 46 16 chr15 41927248 41927392 -59453129 - L1PA6 LINE L1 -3929 2934 2796 2344 106 0 6 chr15 41927392 41927703 -59452818 - AluSg SINE Alu 0 310 2 10260 88 46 16 chr15 41927703 41928828 -59451693 - L1PA6 LINE L1 -4067 2796 1607 2277 108 0 13 chr15 41928828 41929143 -59451378 - AluSx SINE Alu -1 311 1 10260 88 46 16 chr15 41929143 41929443 -59451078 - L1PA6 LINE L1 -5256 1607 1317 3397 134 6 17 chr15 41929458 41929988 -59450533 - L1PA6 LINE L1 -5706 1157 634 1145 162 5 0 chr15 41929988 41930186 -59450335 - L1PA6 LINE L1 -6663 200 2 4148 178 12 29 chr15 41930190 41930704 -59449817 + L1M1 LINE L1 3287 3808 -3757 2388 106 66 26 chr15 41930704 41931054 -59449467 - THE1B LTR MaLR 0 364 1 12203 97 25 0 chr15 41931054 41932596 -59447925 - THE1B-int LTR MaLR 0 1580 1 2289 108 61 55 chr15 41932596 41932636 -59447885 - THE1B LTR MaLR 0 364 326 2237 104 3 23 chr15 41932636 41932945 -59447576 + AluY SINE Alu 1 303 -8 2289 108 61 55 chr15 41932945 41933266 -59447255 - THE1B LTR MaLR -38 326 1 4148 178 12 29 chr15 41933266 41933948 -59446573 + L1M1 LINE L1 3805 4461 -3104 1198 199 121 49 chr15 41933951 41934258 -59446263 + MLT1A1 LTR MaLR 37 365 0 315 356 85 13 chr15 41934316 41934633 -59445888 - L2 LINE L2 -941 2373 2034 229 188 0 21 chr15 41934836 41934884 -59445637 - L2 LINE L2 -5 3308 3262 190 214 60 120 chr15 41934933 41935050 -59445471 + L2 LINE L2 3158 3267 -5 1674 176 0 7 chr15 41936187 41936476 -59444045 - AluSx SINE Alu -3 309 23 308 360 0 17 chr15 41936627 41936802 -59443719 + CT-rich Low_complexity Low_complexity 5 176 0 2001 132 0 3 chr15 41986856 41987144 -59393377 + AluSx SINE Alu 23 309 -3 190 214 60 120 chr15 41988281 41988398 -59392123 - L2 LINE L2 -5 3267 3158 229 188 0 21 chr15 41988447 41988495 -59392026 + L2 LINE L2 3262 3308 -5 315 356 85 13 chr15 41988698 41989015 -59391506 + L2 LINE L2 2034 2373 -941 1198 199 121 49 chr15 41989073 41989380 -59391141 - MLT1A1 LTR MaLR 0 365 37 4148 178 12 29 chr15 41989383 41990065 -59390456 - L1 LINE L1 -3104 4461 3769 2289 108 61 55 chr15 41990065 41990386 -59390135 + THE1B LTR MaLR 1 326 -38 2237 104 3 23 chr15 41990386 41990695 -59389826 - AluY SINE Alu -8 303 1 2289 108 61 55 chr15 41990695 41990735 -59389786 + THE1B LTR MaLR 326 364 0 12203 97 25 0 chr15 41990735 41992277 -59388244 + THE1B-int LTR MaLR 1 1580 0 2388 106 66 26 chr15 41992277 41992627 -59387894 + THE1B LTR MaLR 1 364 0 4148 178 12 29 chr15 41992627 41993141 -59387380 - L1 LINE L1 -3793 3772 3287 1145 162 5 0 chr15 41993145 41993343 -59387178 + L1PA6 LINE L1 2 200 -6663 3397 134 6 17 chr15 41993343 41993873 -59386648 + L1PA6 LINE L1 634 1157 -5706 6533 162 30 29 chr15 41993888 41994188 -59386333 + L1PA6 LINE L1 1317 1615 -5255 2277 108 0 13 chr15 41994188 41994503 -59386018 + AluSx SINE Alu 1 311 -1 6533 162 30 29 chr15 41994503 41995628 -59384893 + L1PA6 LINE L1 1615 2737 -4133 2344 106 0 6 chr15 41995628 41995939 -59384582 + AluSg SINE Alu 2 310 0 6533 162 30 29 chr15 41995939 41996084 -59384437 + L1PA6 LINE L1 2737 2880 -3990 6533 66 0 4 chr15 41996084 41996865 -59383656 + L1PA6 LINE L1 6086 6870 0 6533 162 30 29 chr15 41996865 41999919 -59380602 + L1PA6 LINE L1 2880 6870 0 3025 113 2 2 chr15 41999926 42000335 -59380186 - LTR3 LTR ERVK -1 431 23 6495 95 8 12 chr15 42000342 42000974 -59379547 + L1PB1 LINE L1 5149 5775 -376 2336 74 0 43 chr15 42000974 42001299 -59379222 + AluY SINE Alu 1 311 0 6495 95 8 12 chr15 42001299 42001675 -59378846 + L1PB1 LINE L1 5775 6151 0 18691 157 42 11 chr15 42001691 42002909 -59377612 - L1M1 LINE L1 -4264 3301 2122 2729 98 56 0 chr15 42002909 42003266 -59377255 + MER51B LTR ERV1 1 377 0 18691 157 42 11 chr15 42003266 42003567 -59376954 - L1M1 LINE L1 -5443 2122 1832 243 0 0 0 chr15 42003567 42003594 -59376927 + (TC)n Simple_repeat Simple_repeat 2 28 0 18691 157 42 11 chr15 42003594 42005260 -59375261 - L1M1 LINE L1 -5733 1832 17 354 67 0 0 chr15 42005260 42005305 -59375216 - MSTC LTR MaLR -382 46 2 199 263 83 75 chr15 42005765 42005898 -59374623 + L2 LINE L2 2957 3090 -182 436 265 10 0 chr15 42006106 42006208 -59374313 - MER5A DNA MER1_type -83 106 4 412 323 31 24 chr15 42006403 42006530 -59373991 - MIR3 SINE MIR -78 130 3 214 297 16 0 chr15 42006827 42006891 -59373630 + L2 LINE L2 3244 3308 -5 708 264 62 10 chr15 42007274 42007482 -59373039 + MIR SINE MIR 6 224 -38 2365 156 6 6 chr15 42007525 42007890 -59372631 + MLT1A1 LTR MaLR 1 365 0 34 84 0 0 chr15 42008030 42008113 -59372408 + AT_rich Low_complexity Low_complexity 1 83 0 670 328 81 36 chr15 42008310 42008782 -59371739 + LTR33 LTR ERVL 20 512 -9 295 342 84 61 chr15 42009879 42010142 -59370379 + L2 LINE L2 2996 3264 -8 458 289 46 55 chr15 42010357 42010575 -59369946 - LTR16C LTR ERVL -89 402 187 21 0 0 0 chr15 42010913 42010934 -59369587 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 42012014 42012035 -59368486 + AT_rich Low_complexity Low_complexity 1 21 0 2414 48 52 0 chr15 42012035 42012325 -59368196 + AluY SINE Alu 1 305 -6 433 199 237 0 chr15 42014259 42014390 -59366131 + MER5A DNA MER1_type 16 177 -12 1136 247 87 74 chr15 42014551 42014576 -59365945 + L1MC4a LINE L1 5920 5943 -1865 429 20 0 0 chr15 42014576 42014626 -59365895 + (TA)n Simple_repeat Simple_repeat 2 51 0 1136 247 87 74 chr15 42014626 42014815 -59365706 + L1MC4a LINE L1 5943 6128 -1680 2328 103 0 6 chr15 42014815 42015127 -59365394 + AluSx SINE Alu 1 310 -2 1136 247 87 74 chr15 42015127 42015453 -59365068 + L1MC4a LINE L1 6128 6468 -1340 441 213 75 0 chr15 42015470 42015564 -59364957 - LTR33-int LTR ERVL -3123 433 333 947 240 58 16 chr15 42015574 42015832 -59364689 + MLT1C LTR MaLR 191 459 -8 516 329 12 0 chr15 42015833 42015997 -59364524 - MIR SINE MIR -93 169 4 657 284 129 86 chr15 42016148 42016945 -59363576 + L1MEd LINE L1 66 924 -5195 2175 132 0 0 chr15 42016945 42017249 -59363272 + AluSx SINE Alu 1 304 -8 657 284 129 86 chr15 42017249 42017555 -59362966 + L1MEd LINE L1 924 1216 -4903 935 243 171 47 chr15 42017555 42017626 -59362895 - LTR33 LTR ERVL -1 520 459 1577 168 56 3 chr15 42017626 42017777 -59362744 - AluJo SINE Alu -11 301 159 1921 129 33 0 chr15 42017777 42018079 -59362442 - AluSx SINE Alu 0 312 1 1577 168 56 3 chr15 42018079 42018213 -59362308 - AluJo SINE Alu -153 159 1 935 243 171 47 chr15 42018213 42018545 -59361976 - LTR33 LTR ERVL -62 459 67 323 211 260 16 chr15 42018578 42018701 -59361820 + LTR33 LTR ERVL 362 514 -7 207 150 50 0 chr15 42018759 42018819 -59361702 + GA-rich Low_complexity Low_complexity 2 64 0 25 65 0 0 chr15 42019320 42019366 -59361155 + AT_rich Low_complexity Low_complexity 1 46 0 206 79 0 53 chr15 42021581 42021619 -59358902 + (GGGGA)n Simple_repeat Simple_repeat 3 38 0 560 301 88 89 chr15 42021619 42022321 -59358200 + L2 LINE L2 1705 2406 -908 234 0 0 0 chr15 42022321 42022347 -59358174 + (CA)n Simple_repeat Simple_repeat 1 26 0 560 301 88 89 chr15 42022347 42022885 -59357636 + L2 LINE L2 2406 2943 -371 2402 55 3 7 chr15 42023586 42023875 -59356646 + AluY SINE Alu 1 288 -23 5771 118 102 16 chr15 42023916 42024930 -59355591 - MER52C LTR ERV1 -175 1103 3 635 279 135 30 chr15 42025654 42026091 -59354430 - MER90 LTR ERV1 -14 561 78 203 216 0 0 chr15 42026108 42026145 -59354376 + MIR3 SINE MIR 123 159 -49 3110 158 28 20 chr15 42026308 42026846 -59353675 - L1PA16 LINE L1 -1 6165 5624 2017 136 46 15 chr15 42026850 42027174 -59353347 - MSTB LTR MaLR -92 334 1 1086 152 94 0 chr15 42027175 42027366 -59353155 - L1PA16 LINE L1 -524 5642 5434 211 301 17 75 chr15 42027455 42027587 -59352934 - MIR SINE MIR -88 120 1 1562 233 12 0 chr15 42028549 42028879 -59351642 + MER58B DNA MER1_type 8 341 0 1882 110 61 0 chr15 42028933 42029197 -59351324 + AluSx SINE Alu 14 293 -19 25 0 0 0 chr15 42030523 42030548 -59349973 + AT_rich Low_complexity Low_complexity 1 25 0 3385 125 48 103 chr15 42030747 42031094 -59349427 + MER6A DNA MER2_type 1 365 -500 309 26 0 0 chr15 42031094 42031132 -59349389 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 2379 60 0 3 chr15 42031132 42031414 -59349107 - AluSc SINE Alu -28 281 1 3385 125 48 103 chr15 42031414 42031497 -59349024 + MER6A DNA MER2_type 364 450 -415 2175 95 14 0 chr15 42031497 42031782 -59348739 - AluY SINE Alu -3 308 20 3385 125 48 103 chr15 42031782 42031989 -59348532 + MER6A DNA MER2_type 450 605 0 1002 219 90 0 chr15 42032078 42032279 -59348242 - MER20 DNA MER1_type 0 219 1 646 251 30 25 chr15 42033316 42033515 -59347006 + L1ME4a LINE L1 5572 5771 -350 310 218 89 24 chr15 42033632 42033756 -59346765 + L1ME4a LINE L1 5956 6087 -34 24 54 0 18 chr15 42033767 42033802 -59346719 + AT_rich Low_complexity Low_complexity 1 36 -19 1785 156 14 20 chr15 42033802 42034097 -59346424 - AluSx SINE Alu -19 293 1 24 54 0 18 chr15 42034097 42034117 -59346404 + AT_rich Low_complexity Low_complexity 36 55 0 1186 205 134 72 chr15 42034250 42034901 -59345620 + LTR1B LTR ERV1 105 785 0 1108 212 136 4 chr15 42034903 42035153 -59345368 - MER21B LTR ERV1 -562 301 19 307 210 17 118 chr15 42035150 42035269 -59345252 - MER21B LTR ERV1 -756 107 1 * 309 276 168 24 chr15 42035974 42036224 -59344297 - L1MC4a LINE L1 -1690 6118 5833 778 106 35 18 chr15 42036517 42036687 -59343834 + GA-rich Low_complexity Low_complexity 2 174 0 2360 72 0 0 chr15 42036883 42037173 -59343348 - AluY SINE Alu -3 308 19 203 86 86 0 chr15 42038717 42038752 -59341769 + T-rich Low_complexity Low_complexity 1 38 0 198 0 0 0 chr15 42038794 42038816 -59341705 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2341 31 0 0 chr15 42038817 42039076 -59341445 - L1PA4 LINE L1 -8 6147 5889 407 153 0 0 chr15 42039485 42039544 -59340977 - MER74A LTR ERVL -26 532 474 2181 123 3 3 chr15 42039544 42039853 -59340668 + AluSq SINE Alu 1 309 -4 346 158 0 40 chr15 42039856 42039932 -59340589 + LTR30 LTR ERV1 552 624 -98 1383 133 57 0 chr15 42039932 42040143 -59340378 + LTR12 LTR ERV1 362 584 -130 22 0 0 0 chr15 42040418 42040440 -59340081 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr15 42040444 42040480 -59340041 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1585 189 34 6 chr15 42040482 42040810 -59339711 - MER74A LTR ERVL -70 488 152 313 280 80 0 chr15 42040917 42041067 -59339454 - MER74A LTR ERVL -265 293 132 195 326 0 0 chr15 42041249 42041292 -59339229 + MIR SINE MIR 13 55 -207 2130 117 3 7 chr15 42041307 42041605 -59338916 + AluSx SINE Alu 1 297 -15 439 239 0 0 chr15 42041668 42041760 -59338761 - MIR SINE MIR -67 195 104 376 259 12 0 chr15 42041740 42041825 -59338696 + MIR SINE MIR 177 262 0 * 255 310 40 30 chr15 42043459 42043559 -59336962 + MIR SINE MIR 34 134 -74 2732 137 14 18 chr15 42043599 42044037 -59336484 + LOR1b LTR ERV1 1 436 -25 684 119 0 0 chr15 42044115 42044216 -59336305 - LTR12 LTR ERV1 -133 581 481 334 271 17 0 chr15 42044217 42044335 -59336186 - LTR30 LTR ERV1 -79 643 524 1145 145 144 15 chr15 42044335 42044585 -59335936 - LTR12 LTR ERV1 -432 2006 55 308 173 0 0 chr15 42044585 42044637 -59335884 - LTR30 LTR ERV1 -670 52 1 2096 104 7 11 chr15 42047589 42047923 -59332598 - AluSq SINE Alu 0 333 1 704 255 96 10 chr15 42048437 42048645 -59331876 + MIR SINE MIR 34 259 -3 446 82 0 0 chr15 42049334 42049395 -59331126 + MSTB2 LTR MaLR 85 145 -312 935 270 91 19 chr15 42049791 42050110 -59330411 - LTR16B LTR ERVL 0 464 123 369 0 0 0 chr15 42050177 42050218 -59330303 + (CA)n Simple_repeat Simple_repeat 2 42 0 671 315 42 52 chr15 42050264 42050349 -59330172 - L1MC4a LINE L1 -1892 5916 5832 2545 154 43 19 chr15 42050349 42050765 -59329756 + MSTB LTR MaLR 1 426 0 671 315 42 52 chr15 42050765 42051155 -59329366 - L1MC4a LINE L1 -1976 5832 5446 263 301 14 14 chr15 42051529 42051602 -59328919 - MIR SINE MIR -113 95 23 21 36 0 0 chr15 42051617 42051645 -59328876 + AT_rich Low_complexity Low_complexity 1 28 0 1698 161 17 30 chr15 42052183 42052482 -59328039 + MSTB LTR MaLR 75 369 -57 278 310 32 32 chr15 42052813 42052971 -59327550 - L1ME3A LINE L1 0 6170 6013 1155 265 53 39 chr15 42053073 42053541 -59326980 - L1MC5 LINE L1 -439 7522 7048 235 140 0 20 chr15 42053549 42053599 -59326922 + L1MEc LINE L1 1891 1939 -4457 2511 58 0 0 chr15 42053601 42053892 -59326629 + AluY SINE Alu 1 291 -20 1135 268 63 31 chr15 42053925 42054369 -59326152 - L1MCc LINE L1 -5037 1386 929 1556 135 32 35 chr15 42054638 42054920 -59325601 + AluY SINE Alu 11 291 -20 1141 268 63 31 chr15 42054953 42055397 -59325124 - L1MCc LINE L1 -5037 1386 929 186 43 0 0 chr15 42055432 42055455 -59325066 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 288 262 56 65 chr15 42055908 42055930 -59324591 + MIR SINE MIR 49 70 -192 2439 74 0 3 chr15 42055930 42056229 -59324292 + AluY SINE Alu 1 298 -13 288 262 56 65 chr15 42056229 42056313 -59324208 + MIR SINE MIR 70 154 -108 * 661 152 8 40 chr15 42056312 42056437 -59324084 - L2 LINE L2 0 3313 3193 234 258 32 21 chr15 42056440 42056533 -59323988 + MIR SINE MIR 163 256 -6 226 365 21 10 chr15 42057698 42057794 -59322727 - MIR SINE MIR -164 98 2 2737 65 9 0 chr15 42057912 42058252 -59322269 - L1PA8 LINE L1 -7 6165 5823 2514 197 123 2 chr15 42058316 42058818 -59321703 + MLT1F1 LTR MaLR 1 563 -4 279 258 57 32 chr15 42058848 42058972 -59321549 + MLT1F1-int LTR MaLR 1243 1369 -2 449 162 14 0 chr15 42058975 42059049 -59321472 + MLT1F1 LTR MaLR 3 77 -490 316 222 37 89 chr15 42059087 42059222 -59321299 + MER45A DNA AcHobo 51 178 0 295 324 37 0 chr15 42060495 42060603 -59319918 + LTR16A LTR ERVL 3 114 -336 252 333 94 18 chr15 42060648 42060819 -59319702 + LTR16A LTR ERVL 258 441 -9 485 336 87 25 chr15 42061188 42061554 -59318967 + HERV16 LTR ERVL 272 660 -4336 2186 112 27 0 chr15 42061562 42061858 -59318663 + AluSc SINE Alu 1 304 -5 1547 298 16 7 chr15 42062149 42062589 -59317932 + HERV16 LTR ERVL 947 1390 -3606 709 273 6 6 chr15 42062585 42062761 -59317760 + ERVL LTR ERVL 3021 3196 -2568 * 438 297 61 20 chr15 42062814 42063116 -59317405 + ERVL LTR ERVL 3134 3325 -1671 * 581 297 78 63 chr15 42063096 42063861 -59316660 + ERVL LTR ERVL 4237 5383 -381 931 70 0 0 chr15 42064832 42064946 -59315575 + AluSp/q SINE Alu 186 299 -14 13193 191 38 17 chr15 42065986 42067424 -59313097 + L1PB1 LINE L1 630 2036 -4831 2316 132 24 16 chr15 42067424 42067796 -59312725 - THE1C LTR MaLR 0 375 1 9314 105 57 73 chr15 42067796 42069401 -59311120 - THE1C-int LTR MaLR 0 1580 1 2321 109 41 16 chr15 42069401 42069767 -59310754 - THE1C LTR MaLR 0 375 1 13193 191 38 17 chr15 42069767 42074286 -59306235 + L1PB1 LINE L1 2035 6862 -5 195 281 53 0 chr15 42074294 42074351 -59306170 - MIR SINE MIR -155 107 48 519 328 22 18 chr15 42076601 42076830 -59303691 - HERVL LTR ERVL -2323 3331 3102 1261 323 55 21 chr15 42076937 42077616 -59302905 - HERVL LTR ERVL -2102 2894 2193 274 374 9 0 chr15 42077831 42077938 -59302583 + MIR SINE MIR 37 144 -64 2359 73 0 3 chr15 42077960 42078247 -59302274 + AluY SINE Alu 1 286 -25 223 250 10 39 chr15 42078598 42078702 -59301819 + T-rich Low_complexity Low_complexity 2 102 0 784 75 61 34 chr15 42079087 42079234 -59301287 - AluSq/x SINE Alu -161 151 1 343 289 107 31 chr15 42080014 42080173 -59300348 + MIR SINE MIR 22 192 -70 777 201 34 61 chr15 42081036 42081330 -59299191 + pTR5 LTR ERV1 743 1028 -1410 5214 97 25 58 chr15 42081409 42082264 -59298257 + LTR12 LTR ERV1 1 826 0 189 196 0 0 chr15 42082503 42082554 -59297967 + GA-rich Low_complexity Low_complexity 1 51 0 216 0 0 0 chr15 42082584 42082608 -59297913 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2259 101 7 3 chr15 42082621 42082927 -59297594 - AluY SINE Alu -4 307 1 2173 136 3 0 chr15 42082934 42083242 -59297279 - AluSx SINE Alu -3 309 1 451 301 59 48 chr15 42083259 42083445 -59297076 + MIR3 SINE MIR 16 203 -5 1769 138 21 10 chr15 42083740 42084029 -59296492 + AluSx SINE Alu 1 292 -20 28 48 0 0 chr15 42084338 42084380 -59296141 + AT_rich Low_complexity Low_complexity 1 42 0 1166 159 0 15 chr15 42084609 42084810 -59295711 + AluSg/x SINE Alu 94 291 -19 238 238 143 0 chr15 42085003 42085066 -59295455 + MIR SINE MIR 15 86 -176 474 273 0 0 chr15 42085451 42085572 -59294949 - MIR SINE MIR -13 249 129 180 0 0 0 chr15 42085922 42085942 -59294579 + (T)n Simple_repeat Simple_repeat 1 20 0 1709 152 72 0 chr15 42087161 42087437 -59293084 - AluSx SINE Alu -16 296 1 860 249 30 0 chr15 42087688 42087885 -59292636 - MIR SINE MIR -48 214 12 288 324 180 14 chr15 42087865 42088143 -59292378 + L2 LINE L2 2583 2906 -408 * 339 267 134 35 chr15 42088379 42088581 -59291940 + L3 LINE CR1 1133 1354 -223 466 264 151 9 chr15 42091051 42091263 -59289258 - MLT1L LTR MaLR 0 615 374 23 54 0 0 chr15 42091877 42091914 -59288607 + AT_rich Low_complexity Low_complexity 1 37 0 742 276 199 28 chr15 42092104 42092567 -59287954 + MLT1H LTR MaLR 8 549 0 539 235 0 0 chr15 42093740 42093859 -59286662 - MER94 DNA DNA -15 119 1 4123 151 51 8 chr15 42094955 42095658 -59284863 + MER44D DNA MER2_type 1 605 0 333 292 141 31 chr15 42095830 42096022 -59284499 - MIR SINE MIR -19 243 31 500 313 0 8 chr15 42096983 42097111 -59283410 - MER5B DNA MER1_type -1 177 51 300 253 105 43 chr15 42097722 42097884 -59282637 + MLT1L LTR MaLR 442 613 -2 313 255 181 20 chr15 42098557 42098706 -59281815 + MIR3 SINE MIR 5 177 -31 294 237 0 0 chr15 42099520 42099596 -59280925 + CT-rich Low_complexity Low_complexity 2 77 0 2220 157 15 48 chr15 42100462 42100713 -59279808 - MER65A LTR ERV1 0 445 214 2374 67 10 3 chr15 42100713 42101011 -59279510 - AluY SINE Alu -11 300 1 2220 157 15 48 chr15 42101011 42101219 -59279302 - MER65A LTR ERV1 -231 214 1 2148 221 54 19 chr15 42101219 42101833 -59278688 - MER65A-int LTR ERV1 0 4871 4237 660 240 111 0 chr15 42101833 42102004 -59278517 - MER65A-int LTR ERV1 -739 4132 3943 347 164 14 41 chr15 42102414 42102487 -59278034 - MER65A-int LTR ERV1 -980 3956 3886 * 2110 213 97 89 chr15 42102475 42103904 -59276617 - MER65A-int LTR ERV1 -1114 4028 2640 606 216 10 50 chr15 42103989 42104188 -59276333 - MER65A-int LTR ERV1 -2868 3730 3540 7576 190 57 67 chr15 42104329 42107282 -59273239 - MER65A-int LTR ERV1 -2377 2494 54 2625 137 11 14 chr15 42107336 42107780 -59272741 - MER65A LTR ERV1 -2 443 1 213 327 100 9 chr15 42107956 42108086 -59272435 + MIR3 SINE MIR 20 160 -48 2103 127 0 0 chr15 42108329 42108613 -59271908 + AluSx SINE Alu 1 284 -28 387 0 0 0 chr15 42108616 42108659 -59271862 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 363 351 114 41 chr15 42109086 42109667 -59270854 - L2 LINE L2 -19 3253 2626 517 289 108 60 chr15 42110087 42110733 -59269788 - L1M4 LINE L1 -2718 3428 2752 241 322 52 0 chr15 42111505 42111620 -59268901 - HAL1b LINE L1 -453 895 775 374 231 133 34 chr15 42111645 42111909 -59268612 - HAL1b LINE L1 -635 713 424 709 207 0 13 chr15 42111965 42112115 -59268406 - MER106A DNA MER1_type -88 148 1 386 297 86 40 chr15 42112184 42112406 -59268115 - HAL1b LINE L1 -1052 296 65 803 329 148 8 chr15 42114094 42114480 -59266041 + LTR16A LTR ERVL 11 450 0 323 256 110 43 chr15 42114835 42114999 -59265522 - MIR SINE MIR -43 219 45 23 0 0 0 chr15 42115294 42115317 -59265204 + AT_rich Low_complexity Low_complexity 1 23 0 1837 156 0 35 chr15 42116713 42117028 -59263493 - AluSx SINE Alu -8 304 1 314 285 89 25 chr15 42117642 42117800 -59262721 + LTR16A LTR ERVL 283 450 0 2167 102 3 10 chr15 42118286 42118580 -59261941 - AluSx SINE Alu 0 312 21 328 339 8 0 chr15 42118682 42118809 -59261712 - MIR SINE MIR -2 260 133 366 316 105 77 chr15 42118911 42119303 -59261218 + L2 LINE L2 2862 3264 -8 2469 83 0 3 chr15 42119392 42119705 -59260816 - AluSx SINE Alu 0 312 1 244 284 233 9 chr15 42119984 42120100 -59260421 + MIR SINE MIR 10 151 -111 1368 117 35 31 chr15 42121716 42121973 -59258548 + L1MA9 LINE L1 5894 6151 -161 2292 147 52 5 chr15 42121973 42122374 -59258147 + MER83 LTR ERV1 1 420 -28 604 134 71 0 chr15 42122392 42122519 -59258002 + L1MA9 LINE L1 6147 6282 -30 242 213 260 16 chr15 42122821 42122948 -59257573 + LTR33 LTR ERVL 8 165 -356 586 214 0 21 chr15 42123235 42123380 -59257141 - L1ME1 LINE L1 0 6184 6040 388 338 73 0 chr15 42123381 42123517 -59257004 - L2 LINE L2 -564 2750 2605 266 361 102 19 chr15 42123514 42123622 -59256899 - L2 LINE L2 -45 3227 3111 * 235 262 101 38 chr15 42124110 42124267 -59256254 + MIR SINE MIR 1 169 -64 1343 219 20 12 chr15 42124801 42125143 -59255378 - L1ME LINE L1 -559 5676 5332 487 242 16 0 chr15 42125143 42125267 -59255254 - MER58B DNA MER1_type 0 341 216 633 205 58 11 chr15 42125336 42125526 -59254995 - L1ME LINE L1 -880 5335 5137 2959 210 56 96 chr15 42125695 42126414 -59254107 - L1ME LINE L1 -1877 4338 3701 1391 85 5 31 chr15 42126414 42126634 -59253887 + L1MA2 LINE L1 6087 6304 0 2959 210 56 96 chr15 42126634 42127314 -59253207 - L1ME LINE L1 -2514 3701 2995 2088 124 40 0 chr15 42127332 42127655 -59252866 - L1PA15 LINE L1 -21 6144 5809 1298 258 43 5 chr15 42127661 42128107 -59252414 - L1ME LINE L1 -3231 2984 2522 2039 166 42 13 chr15 42128130 42128509 -59252012 + MLT1B LTR MaLR 1 390 0 1495 72 5 0 chr15 42128531 42128725 -59251796 - AluY SINE Alu -1 310 116 326 133 34 10 chr15 42128725 42128809 -59251712 - AluS SINE Alu -241 62 1 957 301 75 10 chr15 42129151 42129630 -59250891 - L1ME LINE L1 -5835 561 52 2501 66 0 3 chr15 42129735 42130037 -59250484 - AluY SINE Alu -10 301 1 2365 85 7 0 chr15 42130050 42130356 -59250165 - AluY SINE Alu -3 308 1 345 174 0 0 chr15 42130788 42130857 -59249664 + GA-rich Low_complexity Low_complexity 1 69 0 812 268 77 1 chr15 42131308 42131652 -59248869 + LTR16C LTR ERVL 80 491 0 1624 105 8 32 chr15 42132117 42132364 -59248157 - AluSg/x SINE Alu 0 310 70 804 220 86 19 chr15 42132804 42133013 -59247508 + MER58A DNA MER1_type 1 223 -1 647 159 0 0 chr15 42133200 42133307 -59247214 - AluSx SINE Alu -1 309 203 822 153 0 0 chr15 42133311 42133429 -59247092 - AluSx SINE Alu -194 118 1 698 189 132 26 chr15 42133456 42133684 -59246837 + LTR16A1 LTR ERVL 204 455 -2 3595 156 16 0 chr15 42134226 42134872 -59245649 + L1PA14 LINE L1 5479 6134 -27 6823 126 47 27 chr15 42135203 42136405 -59244116 - Tigger3b DNA MER2_type -2 1229 3 255 333 42 7 chr15 42137094 42137238 -59243283 - MER117 DNA MER1_type -48 149 1 296 250 69 62 chr15 42138383 42138527 -59241994 - L2 LINE L2 -5 3308 3164 197 356 23 0 chr15 42138897 42138984 -59241537 - L2 LINE L2 -647 2667 2579 2572 33 7 3 chr15 42139143 42139449 -59241072 + AluY SINE Alu 1 307 -4 2596 144 56 4 chr15 42139742 42140242 -59240279 + L1MA5 LINE L1 5770 6295 -5 1066 154 71 139 chr15 42140334 42140435 -59240086 + L1MDa LINE L1 16 122 -6418 1935 150 48 27 chr15 42140435 42140849 -59239672 - L1MA7 LINE L1 0 6291 5869 1066 154 71 139 chr15 42140849 42141142 -59239379 + L1MDa LINE L1 122 383 -6157 1022 167 11 6 chr15 42141142 42141316 -59239205 + MER5A DNA MER1_type 15 189 0 277 179 13 39 chr15 42141464 42141542 -59238979 - L1PA16 LINE L1 0 6166 6091 1001 187 16 5 chr15 42142635 42142822 -59237699 + MER5A DNA MER1_type 1 189 0 2136 127 132 8 chr15 42143296 42143675 -59236846 + MSTA LTR MaLR 1 426 -2 4254 136 14 14 chr15 42145002 42145715 -59234806 - L1PA10 LINE L1 -13 6155 5443 383 183 71 8 chr15 42146317 42146443 -59234078 - L1P4 LINE L1 -593 5575 5442 194 341 0 33 chr15 42146557 42146648 -59233873 + MER5A DNA MER1_type 3 90 -99 * 282 244 0 89 chr15 42146589 42146679 -59233842 - MER5A DNA MER1_type -22 167 86 341 289 67 37 chr15 42146808 42146943 -59233578 + MER5B DNA MER1_type 39 177 -1 312 288 136 30 chr15 42147158 42147422 -59233099 + MER102b DNA MER1_type 7 298 -43 184 250 68 0 chr15 42147471 42147515 -59233006 - L2 LINE L2 -4 3268 3222 219 69 0 0 chr15 42147849 42147878 -59232643 + (A)n Simple_repeat Simple_repeat 1 29 0 5870 55 4 0 chr15 42148884 42149614 -59230907 - L1PA7 LINE L1 -2 6152 5420 367 258 86 0 chr15 42150201 42150329 -59230192 + MIR SINE MIR 111 249 -13 923 203 154 48 chr15 42150603 42150933 -59229588 + MLT1A1 LTR MaLR 1 365 0 1639 294 112 20 chr15 42151043 42151679 -59228842 + L2 LINE L2 38 731 -2583 998 272 140 14 chr15 42151681 42152189 -59228332 + L2 LINE L2 2692 3280 -33 219 289 14 49 chr15 42152444 42152586 -59227935 + T-rich Low_complexity Low_complexity 4 140 0 5577 85 29 1 chr15 42153564 42154389 -59226132 + L1PA10 LINE L1 5321 6168 0 30 59 0 0 chr15 42156210 42156261 -59224260 + AT_rich Low_complexity Low_complexity 1 51 0 276 341 59 73 chr15 42156283 42156556 -59223965 + L2 LINE L2 3004 3272 0 330 290 87 48 chr15 42157360 42157494 -59223027 + L1MEd LINE L1 598 725 -5445 613 281 110 74 chr15 42157494 42157652 -59222869 - LTR16C LTR ERVL 0 491 340 2170 112 11 0 chr15 42157652 42157963 -59222558 + AluSp SINE Alu 1 314 0 613 281 110 74 chr15 42157963 42158275 -59222246 - LTR16C LTR ERVL -151 340 1 330 290 87 48 chr15 42158275 42158535 -59221986 + L1MEd LINE L1 725 1035 -5135 284 271 32 48 chr15 42158583 42158771 -59221750 + L1MEd LINE L1 1004 1188 -4931 311 332 133 4 chr15 42158819 42159075 -59221446 + L1MEd LINE L1 1274 1562 -4748 297 194 15 0 chr15 42159081 42159148 -59221373 + L1MEd LINE L1 1541 1608 -4702 2269 119 3 0 chr15 42159349 42159642 -59220879 + AluSx SINE Alu 1 294 -18 527 270 147 53 chr15 42160043 42160439 -59220082 + L1MEd LINE L1 3260 3692 -2437 247 294 15 0 chr15 42160848 42160916 -59219605 + LTR16C LTR ERVL 288 356 -135 400 192 50 25 chr15 42161035 42161155 -59219366 + L1MEd LINE L1 3830 3952 -2177 3815 149 87 52 chr15 42161166 42161337 -59219184 + L1MB3 LINE L1 5192 5356 -827 2280 95 10 3 chr15 42161337 42161642 -59218879 + AluSp SINE Alu 1 307 -6 3815 149 87 52 chr15 42161642 42162428 -59218093 + L1MB3 LINE L1 5356 6182 -1 689 274 109 43 chr15 42162539 42163047 -59217474 - LTR33A LTR ERVL -8 515 1 281 236 14 0 chr15 42163097 42163169 -59217352 + L1ME3A LINE L1 6010 6082 -88 1835 158 10 3 chr15 42163939 42164237 -59216284 + AluSx SINE Alu 1 300 -12 1364 276 45 25 chr15 42164316 42164480 -59216041 + LTR16A LTR ERVL 2 161 -289 1347 171 90 81 chr15 42164480 42164890 -59215631 + MLT2D LTR ERVL 1 414 0 1364 276 45 25 chr15 42164890 42165167 -59215354 + LTR16A LTR ERVL 161 450 0 887 99 0 8 chr15 42165410 42165531 -59214990 - AluSp SINE Alu -119 194 75 223 190 13 13 chr15 42165702 42165781 -59214740 + (TA)n Simple_repeat Simple_repeat 2 80 0 331 200 104 0 chr15 42166154 42166279 -59214242 + CT-rich Low_complexity Low_complexity 4 141 0 328 308 158 0 chr15 42166279 42166513 -59214008 - HAL1 LINE L1 -1205 1302 1032 1773 178 6 16 chr15 42166547 42166861 -59213660 - AluSx SINE Alu -1 311 1 2191 98 7 3 chr15 42167320 42167617 -59212904 + AluY SINE Alu 1 298 -13 372 254 41 41 chr15 42167882 42168004 -59212517 + L1ME3 LINE L1 5999 6120 -42 2403 90 3 10 chr15 42168460 42168771 -59211750 - AluY SINE Alu -2 309 1 662 297 47 8 chr15 42169176 42169412 -59211109 - LTR16A LTR ERVL -7 443 199 309 313 0 0 chr15 42169874 42170021 -59210500 + ERVL LTR ERVL 3875 4021 -1743 1115 377 50 17 chr15 42170116 42171036 -59209485 + ERVL LTR ERVL 4161 5110 -654 1400 303 52 24 chr15 42171174 42171802 -59208719 - HERV16 LTR ERVL -4350 646 1 905 333 38 16 chr15 42171802 42172228 -59208293 - LTR16A LTR ERVL 0 450 16 697 261 58 62 chr15 42172938 42173263 -59207258 + MLT1I LTR MaLR 85 408 -1 243 265 53 53 chr15 42174057 42174189 -59206332 + MIR SINE MIR 126 257 -5 1237 208 97 93 chr15 42174412 42174594 -59205927 + MLT1E LTR MaLR 1 181 -412 1853 195 3 14 chr15 42174594 42174963 -59205558 - MLT1A1 LTR MaLR 0 365 1 1237 208 97 93 chr15 42174963 42175379 -59205142 + MLT1E LTR MaLR 181 589 -4 192 309 55 0 chr15 42175815 42175870 -59204651 - MIR SINE MIR -173 89 32 25 31 0 0 chr15 42177310 42177342 -59203179 + AT_rich Low_complexity Low_complexity 1 32 0 243 291 60 34 chr15 42178247 42178364 -59202157 + L2 LINE L2 3193 3312 -1 414 236 22 0 chr15 42178985 42179074 -59201447 - MIR SINE MIR -8 254 164 670 193 139 0 chr15 42179151 42179317 -59201204 - MER3 DNA MER1_type -1 208 20 312 284 38 11 chr15 42179372 42179498 -59201023 - MIR SINE MIR -30 178 45 370 345 70 6 chr15 42180332 42180503 -59200018 + LTR16C LTR ERVL 96 277 -214 1155 251 171 7 chr15 42180525 42180939 -59199582 + MLT1E LTR MaLR 48 529 -64 2129 205 51 3 chr15 42180945 42181516 -59199005 - L1M4 LINE L1 -1537 4609 4012 413 197 68 0 chr15 42181534 42181651 -59198870 + MLT1C LTR MaLR 1 125 -342 6092 102 18 1 chr15 42181651 42181811 -59198710 + L1PA10 LINE L1 4615 4771 -1397 2456 105 41 6 chr15 42181811 42182173 -59198348 + THE1C LTR MaLR 1 375 0 6092 102 18 1 chr15 42182173 42183524 -59196997 + L1PA10 LINE L1 4771 6152 -16 3155 214 63 19 chr15 42183526 42185150 -59195371 - L1MC2 LINE L1 -195 6960 5268 1001 99 0 138 chr15 42185153 42185334 -59195187 + AluY SINE Alu 1 156 -155 222 191 0 0 chr15 42185949 42185991 -59194530 + C-rich Low_complexity Low_complexity 1 42 0 1176 134 12 0 chr15 42186154 42186326 -59194195 + AluSg/x SINE Alu 125 298 -12 683 277 80 11 chr15 42186328 42186678 -59193843 - L1MC2 LINE L1 -1678 5279 4906 * 1217 247 55 67 chr15 42186673 42187341 -59193180 - L1MC2 LINE L1 -4764 2195 1521 239 0 32 0 chr15 42187341 42187372 -59193149 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2037 134 3 3 chr15 42187377 42187676 -59192845 - AluSx SINE Alu -13 299 1 1217 247 55 67 chr15 42187676 42188021 -59192500 - L1MC2 LINE L1 -5442 1517 1187 2605 230 72 61 chr15 42188213 42188772 -59191749 - L1MC2 LINE L1 -5510 1349 797 2094 138 10 0 chr15 42188772 42189070 -59191451 - AluSx SINE Alu -11 301 1 2605 230 72 61 chr15 42189070 42189717 -59190804 - L1MC2 LINE L1 -6062 797 11 517 238 238 28 chr15 42190803 42191017 -59189504 - MIR SINE MIR -1 261 3 1196 277 56 12 chr15 42191771 42192190 -59188331 + LTR16A LTR ERVL 1 446 -4 244 352 94 13 chr15 42192257 42192490 -59188031 + L2 LINE L2 2382 2633 -681 372 275 50 63 chr15 42192506 42192728 -59187793 + LTR16C LTR ERVL 1 219 -272 1604 91 91 0 chr15 42192729 42192948 -59187573 + AluSc SINE Alu 60 298 -11 2679 180 112 26 chr15 42192958 42193637 -59186884 - LTR39 LTR ERV1 -7 776 40 475 279 34 7 chr15 42193680 42193827 -59186694 + LTR16C LTR ERVL 273 423 -68 237 226 0 0 chr15 42193855 42193908 -59186613 - LTR16C LTR ERVL 0 491 439 5487 114 35 23 chr15 42194782 42195798 -59184723 - L1MA4A LINE L1 -1 6302 5274 4407 114 20 1 chr15 42195769 42196468 -59184053 - L1PA8 LINE L1 0 6172 5461 * 3338 179 52 3 chr15 42196471 42197225 -59183296 - L1 LINE L1 -816 5330 4540 11361 48 7 14 chr15 42197226 42199521 -59181000 - L1PA3 LINE L1 -1 6154 3870 753 146 18 0 chr15 42199736 42199955 -59180566 - L1MA2 LINE L1 -14 6290 6023 206 125 94 0 chr15 42200296 42200392 -59180129 + (TATAA)n Simple_repeat Simple_repeat 5 109 0 * 258 119 56 40 chr15 42200378 42200504 -59180017 + (TA)n Simple_repeat Simple_repeat 2 129 0 262 149 75 46 chr15 42200524 42200698 -59179823 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 280 218 53 29 chr15 42200571 42200741 -59179780 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 240 143 67 0 chr15 42200753 42200872 -59179649 + (TATAA)n Simple_repeat Simple_repeat 3 129 0 83 42 0 0 chr15 42200872 42200990 -59179531 + AT_rich Low_complexity Low_complexity 1 118 0 185 101 30 81 chr15 42201065 42201164 -59179357 + (TATAA)n Simple_repeat Simple_repeat 1 94 0 226 173 19 0 chr15 42201171 42201223 -59179298 + (TA)n Simple_repeat Simple_repeat 2 54 0 6190 167 24 33 chr15 42201225 42202199 -59178322 - L1MA7 LINE L1 -12 6279 5297 2350 139 17 5 chr15 42202199 42202602 -59177919 - L1PA16 LINE L1 -9 6157 5750 6190 167 24 33 chr15 42202602 42203435 -59177086 - L1MA7 LINE L1 -994 5297 4497 2656 131 47 132 chr15 42203435 42204093 -59176428 + MER7C DNA MER2_type 1 602 0 6190 167 24 33 chr15 42204093 42204567 -59175954 - L1MA7 LINE L1 -1794 4497 4020 308 59 0 59 chr15 42205134 42205185 -59175336 + Tigger3(Golem) DNA MER2_type 2711 2758 -271 258 310 26 39 chr15 42206694 42206790 -59173731 - HERVL LTR ERVL -405 5359 5264 1852 162 113 38 chr15 42206790 42207215 -59173306 + MSTB2 LTR MaLR 1 457 0 258 310 26 39 chr15 42207215 42207273 -59173248 - HERVL LTR ERVL -500 5264 5207 1526 217 3 42 chr15 42207335 42207713 -59172808 + MLT1A2 LTR MaLR 1 363 -11 262 229 0 16 chr15 42207719 42207780 -59172741 - HERVL LTR ERVL -322 4674 4615 275 391 43 10 chr15 42207837 42208136 -59172385 - HERVL LTR ERVL -708 5056 4748 1027 365 40 7 chr15 42208173 42208900 -59171621 - HERVL LTR ERVL -1092 4672 3922 301 305 59 0 chr15 42208899 42209017 -59171504 - HERVL LTR ERVL -1444 3552 3428 * 470 323 24 27 chr15 42209117 42209455 -59171066 - HERVL LTR ERVL -2093 3561 3225 * 1557 301 64 52 chr15 42209450 42210475 -59170046 - HERVL LTR ERVL -2374 2622 1585 2261 99 51 11 chr15 42210518 42210871 -59169650 - THE1C LTR MaLR 0 375 9 1264 304 92 52 chr15 42210896 42211213 -59169308 - HERVL LTR ERVL -3531 1465 1162 486 157 49 0 chr15 42211213 42211315 -59169206 - L1MB1 LINE L1 0 6168 6062 1264 304 92 52 chr15 42211315 42211750 -59168771 - HERVL LTR ERVL -3834 1162 683 771 287 85 59 chr15 42211888 42212111 -59168410 - HERVL LTR ERVL -4489 507 291 2062 136 7 13 chr15 42212111 42212420 -59168101 - AluSx SINE Alu -5 307 1 771 287 85 59 chr15 42212420 42212688 -59167833 - HERVL LTR ERVL -4705 291 3 280 343 37 0 chr15 42212965 42213073 -59167448 - LTR16A LTR ERVL -338 112 1 1406 237 65 61 chr15 42214770 42215310 -59165211 + MLT1F LTR MaLR 1 542 0 2997 192 47 17 chr15 42215845 42216479 -59164042 - MLT1E1 LTR MaLR -1 653 1 4586 138 22 12 chr15 42217626 42218397 -59162124 - L1PA16 LINE L1 0 6166 5388 11988 48 15 2 chr15 42218398 42219981 -59160540 + L1P LINE L1 3049 4651 -1495 357 280 238 11 chr15 42222444 42222633 -59157888 + L1MEd LINE L1 960 1191 -4928 2325 208 28 44 chr15 42222635 42223276 -59157245 + L1M4 LINE L1 4697 5327 -819 1117 83 13 102 chr15 42223276 42223572 -59156949 + L1P4 LINE L1 5186 5459 -709 403 177 21 52 chr15 42223882 42223978 -59156543 + LTR33 LTR ERVL 423 515 -6 27 0 0 0 chr15 42225097 42225124 -59155397 + AT_rich Low_complexity Low_complexity 1 27 0 361 230 36 3 chr15 42225250 42225350 -59155171 + MIR SINE MIR 21 124 -84 206 283 17 0 chr15 42225328 42225388 -59155133 - MIR SINE MIR -82 180 120 * 797 288 68 22 chr15 42225544 42225867 -59154654 - MLT1I LTR MaLR -38 371 34 2238 180 22 12 chr15 42226207 42226623 -59153898 - MSTA LTR MaLR -4 424 5 9254 166 29 9 chr15 42226627 42228240 -59152281 - MSTA-int LTR MaLR 0 1651 7 2076 196 28 3 chr15 42228259 42228651 -59151870 - MSTA LTR MaLR 0 428 27 713 271 0 11 chr15 42229327 42229515 -59151006 + LTR16B LTR ERVL 232 417 -47 316 242 0 63 chr15 42230693 42230788 -59149733 + L1MC4 LINE L1 6615 6703 -1339 371 331 0 0 chr15 42231031 42231152 -59149369 + A-rich Low_complexity Low_complexity 1 121 0 480 234 47 0 chr15 42231265 42231372 -59149149 - AluSq/x SINE Alu -191 122 11 8734 195 116 17 chr15 42231387 42235284 -59145237 - L1 LINE L1 -2621 4587 1 5019 271 87 10 chr15 42235303 42236851 -59143670 - L1 LINE L1 -1147 4999 3334 345 362 31 8 chr15 42236991 42237118 -59143403 + L2 LINE L2 3143 3272 0 686 259 100 104 chr15 42238535 42238989 -59141532 + MLT1H LTR MaLR 41 494 -55 494 60 0 0 chr15 42238989 42239056 -59141465 - L1PA3 LINE L1 -11 6144 6078 686 259 100 104 chr15 42239056 42239110 -59141411 + MLT1H LTR MaLR 494 547 -2 5201 95 17 24 chr15 42239444 42240254 -59140267 - L1MA1 LINE L1 -131 6171 5367 516 236 36 0 chr15 42241422 42241532 -59138989 - MIR SINE MIR -138 124 11 3586 206 69 29 chr15 42241866 42242693 -59137828 - MER21B LTR ERV1 -2 861 2 569 159 16 24 chr15 42242958 42243084 -59137437 - L1MA6 LINE L1 -5 6295 6171 559 225 33 0 chr15 42243097 42243248 -59137273 - L1MB7 LINE L1 0 6184 6029 2592 182 30 18 chr15 42243249 42244028 -59136493 - L1MB7 LINE L1 -393 5785 5002 291 304 12 12 chr15 42244059 42244220 -59136301 - L1MA4 LINE L1 -9 6291 6131 5682 186 30 22 chr15 42244942 42247204 -59133317 - L1MA4A LINE L1 -34 6269 3994 690 122 29 36 chr15 42247346 42247485 -59133036 - L1MA1 LINE L1 -203 6099 5962 225 0 0 0 chr15 42248559 42248584 -59131937 + (CA)n Simple_repeat Simple_repeat 2 26 0 32 26 0 0 chr15 42250594 42250633 -59129888 + AT_rich Low_complexity Low_complexity 1 39 0 235 342 91 15 chr15 42250712 42250911 -59129610 - MIR SINE MIR -1 261 48 1184 163 30 0 chr15 42251245 42251447 -59129074 + MER3 DNA MER1_type 1 208 -1 535 50 12 12 chr15 42251687 42251767 -59128754 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 1381 177 97 10 chr15 42251871 42252159 -59128362 - MER31B LTR ERV1 -8 458 146 1862 122 44 0 chr15 42252435 42252737 -59127784 - AluSx SINE Alu 0 314 1 269 296 70 35 chr15 42255065 42255207 -59125314 + L2 LINE L2 2079 2225 -1089 256 262 107 12 chr15 42255207 42255291 -59125230 - L2 LINE L2 -968 2346 2255 186 349 162 25 chr15 42255477 42255804 -59124717 + L2 LINE L2 2545 2916 -398 694 286 94 10 chr15 42255996 42256293 -59124228 - L2 LINE L2 -166 3147 2826 319 306 54 72 chr15 42256638 42256860 -59123661 - L1MC5 LINE L1 -1131 6830 6613 1107 320 54 0 chr15 42257848 42258238 -59122283 - LTR16A LTR ERVL -14 436 26 2472 147 35 27 chr15 42259117 42259606 -59120915 - L1MA8 LINE L1 -18 6273 5781 663 284 155 24 chr15 42259632 42260013 -59120508 + MER57B LTR ERV1 4 434 0 31 0 0 0 chr15 42260385 42260416 -59120105 + AT_rich Low_complexity Low_complexity 1 31 0 1819 120 60 21 chr15 42261033 42261316 -59119205 + AluSx SINE Alu 1 294 -18 270 313 104 24 chr15 42262444 42262655 -59117866 + MER57-int LTR ERV1 4715 4942 -3315 1788 235 12 45 chr15 42262750 42263244 -59117277 + MER57-int LTR ERV1 5276 5753 -1784 576 332 36 36 chr15 42263262 42263648 -59116873 + MER57-int LTR ERV1 2145 2530 -2117 3390 108 16 63 chr15 42263654 42264228 -59116293 + LTR10B LTR ERV1 1 547 0 1024 236 25 66 chr15 42264425 42264743 -59115778 + MER57-int LTR ERV1 5863 6167 -1370 1999 92 4 4 chr15 42265346 42265608 -59114913 - AluY SINE Alu -15 296 35 672 319 66 21 chr15 42265800 42266135 -59114386 + MER57-int LTR ERV1 6795 7144 -393 1041 211 121 66 chr15 42266135 42266515 -59114006 + MER57A LTR ERV1 1 401 -2 214 235 20 0 chr15 42266515 42266566 -59113955 + (TA)n Simple_repeat Simple_repeat 2 53 0 4933 156 42 48 chr15 42266568 42268202 -59112319 - L1M2 LINE L1 -506 5785 4163 5963 142 63 18 chr15 42268202 42269354 -59111167 + Tigger3b DNA MER2_type 1 1204 -27 1598 176 44 34 chr15 42269379 42269674 -59110847 - AluJo SINE Alu -14 298 1 1809 199 35 0 chr15 42269675 42270072 -59110449 - L1M2 LINE L1 -1982 4164 3754 1253 209 39 61 chr15 42272373 42272784 -59107737 - LTR52 LTR ERVL -19 402 1 5395 205 66 89 chr15 42272786 42274717 -59105804 - LTR52-int LTR ERVL -2 3554 1580 2091 103 0 0 chr15 42274717 42274989 -59105532 - AluSc SINE Alu -37 272 1 5395 205 66 89 chr15 42274989 42275593 -59104928 - LTR52-int LTR ERVL -1976 1580 856 2176 113 0 7 chr15 42275593 42275894 -59104627 - AluSq SINE Alu -14 299 1 5395 205 66 89 chr15 42275894 42275951 -59104570 - LTR52-int LTR ERVL -2700 856 799 1538 238 42 8 chr15 42275976 42276355 -59104166 - LTR52-int LTR ERVL -2889 667 276 1066 226 10 83 chr15 42276368 42276753 -59103768 + MLT1A2 LTR MaLR 18 374 0 1048 232 32 53 chr15 42276754 42277039 -59103482 - LTR52-int LTR ERVL -3275 281 3 1511 221 43 38 chr15 42277040 42277457 -59103064 - LTR52 LTR ERVL -2 419 1 4577 227 55 28 chr15 42277526 42279076 -59101445 + L1M4 LINE L1 3849 5426 -745 828 270 117 70 chr15 42279409 42280426 -59100095 - HAL1 LINE L1 -10 2497 1433 441 190 31 8 chr15 42281003 42281272 -59099249 + (TA)n Simple_repeat Simple_repeat 1 275 0 2191 65 13 48 chr15 42284939 42285249 -59095272 + AluSp SINE Alu 1 299 -14 13279 62 3 0 chr15 42285931 42287684 -59092837 - L1P LINE L1 -4366 1780 23 1022 168 5 25 chr15 42287728 42287925 -59092596 - AluSq SINE Alu -8 305 113 481 292 34 53 chr15 42288766 42288975 -59091546 - LTR16C LTR ERVL -235 256 52 433 205 49 0 chr15 42290421 42290543 -59089978 - L1MC5 LINE L1 -82 7879 7752 232 271 51 0 chr15 42291126 42291185 -59089336 - L2 LINE L2 -24 3289 3228 333 316 167 11 chr15 42291573 42291836 -59088685 + L1MC4a LINE L1 3889 4192 -1954 1088 207 22 78 chr15 42291837 42292108 -59088413 + MLT2B3 LTR ERVL 225 480 -74 2538 118 31 24 chr15 42292560 42292985 -59087536 - MSTA LTR MaLR 0 428 1 9994 74 10 30 chr15 42293665 42295051 -59085470 + SVA Other Other 29 1386 0 349 326 150 27 chr15 42295622 42296314 -59084207 + L1MC4a LINE L1 5004 5780 -748 251 246 0 14 chr15 42296348 42296417 -59084104 + (TA)n Simple_repeat Simple_repeat 1 68 0 772 293 61 53 chr15 42297396 42297755 -59082766 + LTR16A LTR ERVL 83 444 -6 436 276 39 32 chr15 42297761 42297917 -59082604 + HERV16 LTR ERVL 1 157 -4839 4497 157 26 5 chr15 42298155 42298965 -59081556 + L1MC1 LINE L1 5507 6333 0 925 367 8 25 chr15 42298984 42299461 -59081060 + L1PA15-16 LINE L1 54 522 -6317 11537 217 27 10 chr15 42299664 42303133 -59077388 + L1PA15-16 LINE L1 2550 6082 -767 2395 75 3 6 chr15 42303134 42303468 -59077053 - L1PA3 LINE L1 -2 6153 5821 3031 223 16 34 chr15 42303802 42304691 -59075830 + L1M4 LINE L1 3441 4313 -1833 1262 139 57 0 chr15 42304687 42304931 -59075590 + L1MB7 LINE L1 5616 5873 -311 * 2337 93 7 0 chr15 42304931 42305232 -59075289 + AluSx SINE Alu 1 303 -9 772 226 96 13 chr15 42305522 42305759 -59074762 + MIR SINE MIR 1 261 -1 2326 109 0 0 chr15 42305865 42306168 -59074353 + AluSx SINE Alu 2 304 -8 370 279 29 87 chr15 42306658 42306934 -59073587 - L2 LINE L2 -7 3265 3006 271 286 36 9 chr15 42307584 42307696 -59072825 + L1MC4a LINE L1 6055 6169 -1639 2023 143 3 0 chr15 42307786 42308086 -59072435 + AluJb SINE Alu 1 301 -11 702 207 83 0 chr15 42308328 42308497 -59072024 + MIR SINE MIR 59 241 -21 260 175 16 16 chr15 42309442 42309505 -59071016 - L1M3e LINE L1 -6448 582 520 1787 232 79 24 chr15 42309915 42310091 -59070430 - L1ME1 LINE L1 0 6184 6019 2440 120 19 0 chr15 42310091 42310459 -59070062 - THE1C LTR MaLR 0 375 1 1787 232 79 24 chr15 42310459 42310940 -59069581 - L1ME1 LINE L1 -165 6019 5486 250 327 34 42 chr15 42310983 42311246 -59069275 - HERV16 LTR ERVL -1995 3490 3230 1010 319 55 29 chr15 42311284 42312004 -59068517 - HERV16 LTR ERVL -1900 3096 2422 559 311 134 10 chr15 42312058 42312357 -59068164 - HERV16 LTR ERVL -3864 1132 797 533 314 39 24 chr15 42312469 42312724 -59067797 - HERV16 LTR ERVL -4332 664 406 290 322 13 7 chr15 42312804 42312956 -59067565 + (TA)n Simple_repeat Simple_repeat 2 154 0 411 283 59 47 chr15 42313022 42313254 -59067267 + HAL1b LINE L1 219 402 -946 1742 94 0 0 chr15 42314041 42314265 -59066256 + AluY SINE Alu 87 310 -1 2476 143 41 101 chr15 42314333 42314989 -59065532 + L1MA9 LINE L1 5696 6312 0 6182 58 10 0 chr15 42315390 42316217 -59064304 - L1PA6 LINE L1 0 6154 5320 247 240 0 0 chr15 42316277 42316327 -59064194 + L1MA10 LINE L1 932 981 -6584 3264 247 56 55 chr15 42316457 42318681 -59061840 + L1MA10 LINE L1 2086 4305 -3260 2262 110 0 0 chr15 42318681 42318980 -59061541 + AluSq SINE Alu 1 299 -14 3264 247 56 55 chr15 42318980 42319226 -59061295 + L1MA10 LINE L1 4305 4519 -3046 1682 185 6 28 chr15 42319226 42319545 -59060976 + AluJb SINE Alu 1 312 0 3264 247 56 55 chr15 42319545 42319582 -59060939 + L1MA10 LINE L1 4519 4554 -3011 728 254 8 58 chr15 42319588 42319848 -59060673 + L1PA15 LINE L1 426 672 -6115 253 337 50 20 chr15 42319862 42319963 -59060558 + L1PA15 LINE L1 779 882 -5905 3905 219 56 10 chr15 42320298 42320819 -59059702 + L1PA15 LINE L1 1228 1724 -5073 216 0 0 0 chr15 42320819 42320843 -59059678 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3905 219 56 10 chr15 42320843 42321864 -59058657 + L1PA15 LINE L1 1724 2844 -3953 5418 140 10 15 chr15 42321869 42323772 -59056749 + L1PA15 LINE L1 4898 6814 -2 2382 203 43 15 chr15 42323935 42324610 -59055911 + L1MA10 LINE L1 4563 5256 -2309 6534 142 40 23 chr15 42324610 42324934 -59055587 - Tigger1 DNA MER2_type 0 2418 2101 1513 202 13 23 chr15 42324934 42325236 -59055285 - AluJo SINE Alu -13 299 1 6534 142 40 23 chr15 42325236 42325728 -59054793 - Tigger1 DNA MER2_type -317 2101 1573 1494 204 6 54 chr15 42325728 42325905 -59054616 - AluJb SINE Alu -13 299 142 2140 138 0 0 chr15 42325905 42326203 -59054318 - AluSx SINE Alu -14 298 1 1494 204 6 54 chr15 42326203 42326339 -59054182 - AluJb SINE Alu -170 142 1 6534 142 40 23 chr15 42326339 42326717 -59053804 - Tigger1 DNA MER2_type -845 1573 1203 517 157 28 19 chr15 42326717 42326825 -59053696 + L1PA16 LINE L1 6038 6146 -20 745 117 124 0 chr15 42326846 42326983 -59053538 - Tigger1 DNA MER2_type -1656 762 609 3524 146 17 3 chr15 42326986 42327576 -59052945 - L1PA15 LINE L1 -1 6164 5567 85 20 0 0 chr15 42327588 42327687 -59052834 + AT_rich Low_complexity Low_complexity 1 99 0 2928 145 49 57 chr15 42327692 42328307 -59052214 - Tigger1 DNA MER2_type -1807 611 2 6143 181 32 21 chr15 42328308 42330217 -59050304 + L1MA10 LINE L1 5255 7199 -532 1669 237 119 30 chr15 42330221 42330718 -59049803 - MLT2B3 LTR ERVL -8 546 6 1586 199 54 70 chr15 42330719 42331276 -59049245 + L1MA10 LINE L1 7206 7753 0 28 0 0 0 chr15 42333521 42333549 -59046972 + AT_rich Low_complexity Low_complexity 1 28 0 994 153 90 0 chr15 42333922 42334111 -59046410 - L1PA15 LINE L1 -181 5984 5779 1803 173 51 36 chr15 42334114 42334654 -59045867 + MLT2A2 LTR ERVL 3 554 0 5446 183 55 2 chr15 42334655 42336395 -59044126 - L1PA15 LINE L1 -369 5797 3984 1013 309 32 22 chr15 42337414 42337816 -59042705 - LTR16A LTR ERVL -24 426 21 2313 102 0 0 chr15 42338079 42338373 -59042148 - AluY SINE Alu -17 294 1 24 0 0 0 chr15 42339923 42339947 -59040574 + AT_rich Low_complexity Low_complexity 1 24 0 517 161 0 2 chr15 42340018 42340125 -59040396 + L1MC3 LINE L1 7190 7489 -506 442 285 76 7 chr15 42340125 42340269 -59040252 - LTR28 LTR ERV1 0 1020 867 821 196 121 86 chr15 42340284 42340784 -59039737 - LTR1B LTR ERV1 -37 983 422 703 254 116 73 chr15 42341051 42341449 -59039072 - LTR1B LTR ERV1 -411 415 1 1974 185 36 25 chr15 42341449 42341898 -59038623 + L1MC3 LINE L1 7275 7728 -57 6624 22 19 0 chr15 42341905 42342724 -59037797 - L1PA3 LINE L1 -1 6154 5320 553 258 16 0 chr15 42342784 42342908 -59037613 + L1M1 LINE L1 932 1057 -6508 1145 150 14 19 chr15 42342912 42343119 -59037402 + MER52A-int LTR ERV1 1308 1513 -5578 4736 165 44 24 chr15 42343204 42344631 -59035890 + MER52A-int LTR ERV1 1006 4817 -2179 2583 121 28 26 chr15 42344621 42345085 -59035436 + MER52A-int LTR ERV1 2300 2764 -2453 * 941 105 20 0 chr15 42345082 42345234 -59035287 + MER52A-int LTR ERV1 5920 6074 -1131 * 1405 154 55 31 chr15 42345236 42345528 -59034993 + MER52A-int LTR ERV1 4918 5216 -1 7124 169 149 39 chr15 42345529 42347110 -59033411 + MER52A LTR ERV1 1 1755 0 637 224 73 24 chr15 42347140 42347228 -59033293 - L1MB7 LINE L1 -53 6131 6049 2273 116 0 0 chr15 42347228 42347521 -59033000 + AluSg SINE Alu 6 298 -12 637 224 73 24 chr15 42347521 42347678 -59032843 - L1MB7 LINE L1 -135 6049 5874 300 27 0 0 chr15 42347678 42347715 -59032806 + (TG)n Simple_repeat Simple_repeat 2 38 0 344 171 23 34 chr15 42347733 42347821 -59032700 - AluSp/q SINE Alu -9 294 208 1129 225 47 108 chr15 42348351 42349146 -59031375 - L1M4 LINE L1 -2865 3779 3032 424 271 39 58 chr15 42349374 42349632 -59030889 - L1M4 LINE L1 -5924 618 366 235 185 46 0 chr15 42349883 42349948 -59030573 - L1M4 LINE L1 -6420 122 55 225 65 0 0 chr15 42350397 42350428 -59030093 + (CAAAAA)n Simple_repeat Simple_repeat 3 33 0 721 172 52 15 chr15 42350463 42350597 -59029924 + FLAM_C SINE Alu 4 142 -1 612 158 7 48 chr15 42351881 42352027 -59028494 - L1MA4 LINE L1 -59 6241 6102 2092 138 3 0 chr15 42353170 42353461 -59027060 - AluSx SINE Alu -20 292 1 973 218 69 22 chr15 42355114 42355273 -59025248 + L1MA1 LINE L1 17 196 -7369 2654 165 40 70 chr15 42355273 42355904 -59024617 - LTR9 LTR ERV1 0 612 1 973 218 69 22 chr15 42355904 42356019 -59024502 + L1MA1 LINE L1 196 304 -7261 17839 163 61 13 chr15 42356483 42363465 -59017056 + L1MA1 LINE L1 176 7534 -187 1851 141 18 3 chr15 42363465 42363749 -59016772 - AluSx SINE Alu -24 288 1 17839 163 61 13 chr15 42363749 42363947 -59016574 + L1MA1 LINE L1 7534 7721 0 580 224 6 6 chr15 42366652 42366808 -59013713 + (TA)n Simple_repeat Simple_repeat 2 157 0 1349 162 15 24 chr15 42369228 42369478 -59011043 - MSTA LTR MaLR 0 428 161 1679 125 14 25 chr15 42369727 42370006 -59010515 + L1PA15 LINE L1 5743 6018 -147 3486 108 16 6 chr15 42370133 42370642 -59009879 + MER75 DNA T2_type 1 514 0 205 298 0 0 chr15 42371483 42371540 -59008981 + T-rich Low_complexity Low_complexity 1 57 0 410 313 15 15 chr15 42371540 42371674 -59008847 - L2 LINE L2 -5 3267 3134 209 224 0 20 chr15 42372163 42372212 -59008309 + A-rich Low_complexity Low_complexity 2 49 0 4264 162 69 22 chr15 42372646 42373587 -59006934 - L1P4 LINE L1 -620 5545 4539 2527 57 0 0 chr15 42373587 42373885 -59006636 + AluY SINE Alu 1 298 -13 4264 162 69 22 chr15 42373885 42374055 -59006466 - L1P4 LINE L1 -1626 4539 4379 452 114 0 0 chr15 42374170 42374240 -59006281 + LTR23 LTR ERV1 368 437 0 510 179 0 0 chr15 42374240 42374335 -59006186 - L1M4 LINE L1 -723 5455 5361 2032 186 64 66 chr15 42374335 42374863 -59005658 - Tigger1 DNA MER2_type 0 2418 1892 659 211 8 0 chr15 42374864 42374997 -59005524 - FLAM_C SINE Alu -1 142 9 2917 103 11 46 chr15 42375001 42375328 -59005193 - Tigger1 DNA MER2_type -503 1915 1609 2510 55 0 0 chr15 42375328 42375621 -59004900 - AluY SINE Alu -18 293 1 2917 103 11 46 chr15 42375621 42375770 -59004751 - Tigger1 DNA MER2_type -809 1609 1456 1523 134 19 4 chr15 42375771 42376039 -59004482 - L1P LINE L1 -1586 4560 4289 188 290 108 21 chr15 42376395 42376488 -59004033 - MIR SINE MIR -77 185 85 304 325 24 24 chr15 42377652 42377778 -59002743 - LTR16C LTR ERVL -156 335 210 5989 218 29 35 chr15 42377904 42379541 -59000980 - L1P4 LINE L1 -2189 3957 2330 1949 171 26 11 chr15 42380910 42381291 -58999230 - L1MB5 LINE L1 -304 5870 5484 1235 176 7 37 chr15 42381311 42381583 -58998938 + LTR56 LTR ERV1 1 264 -181 551 345 121 42 chr15 42382179 42382724 -58997797 - L3 LINE CR1 -3 1574 987 2385 97 20 6 chr15 42382894 42383244 -58997277 - THE1A LTR MaLR 0 355 1 197 358 21 21 chr15 42383435 42383530 -58996991 + MIR SINE MIR 50 144 -64 2147 262 49 31 chr15 42384052 42384217 -58996304 + L1M4 LINE L1 3064 3225 -2921 2327 87 0 3 chr15 42384217 42384527 -58995994 + AluY SINE Alu 1 309 -2 2147 262 49 31 chr15 42384527 42385158 -58995363 + L1M4 LINE L1 3225 3874 -2272 1584 207 53 79 chr15 42385239 42385555 -58994966 + L1M4 LINE L1 4704 4998 -1148 1736 183 0 3 chr15 42385555 42385839 -58994682 + AluJo SINE Alu 4 286 -26 1584 207 53 79 chr15 42385839 42386141 -58994380 + L1M4 LINE L1 4998 5306 -840 531 196 84 56 chr15 42386175 42386354 -58994167 + L1ME1 LINE L1 4574 4757 -1389 1445 83 5 0 chr15 42386355 42386547 -58993974 + AluY SINE Alu 119 311 0 2340 218 99 28 chr15 42386630 42387501 -58993020 + L1ME1 LINE L1 5180 6122 -44 2122 101 109 3 chr15 42387656 42388023 -58992498 - L1PA13 LINE L1 -4 6159 5754 1108 107 0 7 chr15 42388031 42388181 -58992340 - AluSq/x SINE Alu -163 149 1 446 103 0 0 chr15 42388182 42388250 -58992271 - L1PA13 LINE L1 -1815 4331 4264 487 161 23 0 chr15 42388251 42388338 -58992183 + AluSp/q SINE Alu 168 256 -57 346 299 88 69 chr15 42388489 42388706 -58991815 - LTR16C LTR ERVL -82 409 189 2292 196 48 38 chr15 42388740 42389266 -58991255 - MER44D DNA MER2_type -18 587 2 535 180 5 111 chr15 42389644 42389833 -58990688 + L1MB3 LINE L1 4226 4394 -1752 456 183 9 43 chr15 42389908 42390023 -58990498 + LTR7 LTR ERV1 302 412 -38 3401 195 44 10 chr15 42390034 42390624 -58989897 + L1MB3 LINE L1 4389 4957 -1226 2275 115 0 3 chr15 42390624 42390929 -58989592 - AluSq SINE Alu -7 306 3 3401 195 44 10 chr15 42390929 42391827 -58988694 + L1MB3 LINE L1 4957 5934 -249 345 197 0 0 chr15 42392750 42392821 -58987700 + A-rich Low_complexity Low_complexity 1 71 0 379 331 139 12 chr15 42394137 42394309 -58986212 - MIR SINE MIR -49 213 20 200 98 0 49 chr15 42394494 42394535 -58985986 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 274 260 1 0 chr15 42395795 42395915 -58984606 - MER5A DNA MER1_type -79 110 9 5227 113 41 1 chr15 42396611 42397417 -58983104 - L1PA13 LINE L1 -9 6154 5317 336 258 33 67 chr15 42397470 42397590 -58982931 - MIR SINE MIR 0 262 147 502 270 107 17 chr15 42397723 42397901 -58982620 - MIR SINE MIR -15 247 54 418 293 40 19 chr15 42397974 42398171 -58982350 - L1MC/D LINE L1 -511 5659 5496 317 276 117 15 chr15 42398235 42398500 -58982021 - L1MC/D LINE L1 -840 5306 5015 503 287 52 72 chr15 42398849 42399100 -58981421 + LTR16C LTR ERVL 238 483 -8 184 135 19 19 chr15 42399288 42399340 -58981181 + (TA)n Simple_repeat Simple_repeat 2 53 0 180 0 0 0 chr15 42399379 42399399 -58981122 + (TG)n Simple_repeat Simple_repeat 2 21 0 447 322 17 17 chr15 42399499 42399679 -58980842 + HERVL LTR ERVL 361 540 -4456 5109 207 62 19 chr15 42399964 42401262 -58979259 + Charlie1a DNA MER1_type 1 1354 -101 1236 94 18 0 chr15 42401313 42401484 -58979037 + L1PA8 LINE L1 5988 6161 -11 733 190 28 38 chr15 42401493 42401704 -58978817 + Charlie1 DNA MER1_type 2552 2760 -1 1862 338 48 22 chr15 42401977 42403030 -58977491 + HERVL LTR ERVL 1453 2533 -3121 381 372 14 50 chr15 42403093 42403456 -58977065 + HERVL LTR ERVL 4853 5202 -452 617 245 117 12 chr15 42403923 42404171 -58976350 + MLT1G LTR MaLR 5 267 -263 232 251 137 50 chr15 42404332 42404633 -58975888 - L1MC/D LINE L1 -1599 4547 4211 705 302 101 68 chr15 42404633 42405137 -58975384 - LTR33 LTR ERVL 0 521 1 232 251 137 50 chr15 42405137 42405177 -58975344 - L1MC/D LINE L1 -1935 4211 4176 4911 162 39 31 chr15 42405220 42406239 -58974282 - L1MA9 LINE L1 -1 6311 5285 212 213 16 0 chr15 42406283 42406344 -58974177 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 212 238 32 16 chr15 42406837 42406900 -58973621 + L3 LINE CR1 639 702 -875 305 190 25 0 chr15 42407022 42407101 -58973420 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 502 308 29 62 chr15 42407353 42407587 -58972934 + MIR SINE MIR 18 241 -21 240 264 0 0 chr15 42409259 42409312 -58971209 + MIR3 SINE MIR 151 203 -5 249 294 67 50 chr15 42409317 42409497 -58971024 + L3 LINE CR1 1195 1377 -200 476 238 0 9 chr15 42409810 42409915 -58970606 + MER5B DNA MER1_type 2 105 -73 2420 65 0 0 chr15 42410527 42410837 -58969684 + L1PA7 LINE L1 5840 6149 -5 971 177 33 6 chr15 42412877 42413058 -58967463 + MER2 DNA MER2_type 2 187 -158 1481 245 45 5 chr15 42414886 42415265 -58965256 + MSTD LTR MaLR 3 396 0 1741 103 4 0 chr15 42416919 42417153 -58963368 + THE1C LTR MaLR 1 235 -140 21 0 0 0 chr15 42417679 42417700 -58962821 + AT_rich Low_complexity Low_complexity 1 21 0 6261 109 27 0 chr15 42417723 42418796 -58961725 - L1PB1 LINE L1 0 6151 5045 23 54 0 0 chr15 42418815 42418852 -58961669 + AT_rich Low_complexity Low_complexity 1 37 0 25 99 0 0 chr15 42418938 42419019 -58961502 + AT_rich Low_complexity Low_complexity 1 81 0 319 269 59 42 chr15 42419108 42419227 -58961294 - ERVL LTR ERVL -3511 2253 2133 1188 171 12 29 chr15 42420736 42420981 -58959540 + L1M3 LINE L1 5351 5591 -580 1292 235 63 23 chr15 42421155 42421832 -58958689 - L1MCb LINE L1 -3583 2981 2286 2050 236 20 35 chr15 42421924 42422475 -58958046 + LTR55 LTR ERV 1 543 -5 1213 207 73 25 chr15 42422478 42422982 -58957539 - L1MCb LINE L1 -4418 2146 1748 1428 194 41 77 chr15 42423023 42423263 -58957258 - L1MCb LINE L1 -4897 1149 1058 236 105 26 0 chr15 42423263 42423301 -58957220 + U2 snRNA snRNA 5 43 -145 1428 194 41 77 chr15 42423301 42423658 -58956863 - L1MCb LINE L1 -4988 1058 690 1022 139 7 0 chr15 42423675 42423826 -58956695 - AluSp SINE Alu -26 287 136 1768 248 93 31 chr15 42423827 42424493 -58956028 - L1MCb LINE L1 -5338 707 1 4099 255 59 45 chr15 42424514 42426011 -58954510 - L1MEc LINE L1 -2295 3920 2444 2238 67 0 14 chr15 42426011 42426294 -58954227 - AluY SINE Alu 0 311 33 4099 255 59 45 chr15 42426294 42426407 -58954114 - L1MEc LINE L1 -3771 2444 2334 2070 104 0 72 chr15 42426407 42426725 -58953796 - AluSq SINE Alu -18 295 1 4099 255 59 45 chr15 42426725 42427110 -58953411 - L1MEc LINE L1 -3881 2334 1956 2016 147 138 5 chr15 42427110 42427546 -58952975 - LTR54B LTR ERV1 -1 497 4 4099 255 59 45 chr15 42427546 42428389 -58952132 - L1MEc LINE L1 -4259 1956 1043 926 199 77 11 chr15 42428444 42428716 -58951805 - L1MEc LINE L1 -5459 937 648 1169 346 20 9 chr15 42428717 42429171 -58951350 - L1MEc LINE L1 -5799 597 139 4208 106 8 0 chr15 42429613 42430215 -58950306 + L1PA14 LINE L1 5552 6158 -3 207 0 0 0 chr15 42431193 42431216 -58949305 + (TG)n Simple_repeat Simple_repeat 2 24 0 513 286 6 24 chr15 42431241 42431409 -58949112 + LTR33 LTR ERVL 1 165 -356 2199 247 68 47 chr15 42432971 42435123 -58945398 + L1M3e LINE L1 1 3028 -4078 1800 236 31 12 chr15 42435123 42435547 -58944974 + MSTB1 LTR MaLR 1 432 0 2199 247 68 47 chr15 42435547 42435671 -58944850 + L1M3e LINE L1 3028 3148 -3958 9576 195 55 11 chr15 42435753 42438121 -58942400 + L1M3e LINE L1 3142 5613 -1493 288 324 14 7 chr15 42439065 42439204 -58941317 - LTR16C LTR ERVL -1 490 351 1867 233 136 14 chr15 42439992 42440477 -58940044 - MLT2F LTR ERVL -119 544 1 591 264 58 0 chr15 42441806 42441961 -58938560 - LTR16C LTR ERVL -4 487 324 243 257 0 14 chr15 42442004 42442074 -58938447 - LTR16B LTR ERVL -292 172 104 231 203 122 14 chr15 42444277 42444351 -58936170 + MIR SINE MIR 74 155 -107 1735 112 42 0 chr15 42445334 42445620 -58934901 - L1MA6 LINE L1 0 6300 6003 317 298 36 0 chr15 42445690 42445774 -58934747 + MIR3 SINE MIR 71 157 -51 588 235 12 137 chr15 42446130 42446385 -58934136 - MER58A DNA MER1_type -1 223 1 388 288 42 47 chr15 42447707 42447898 -58932623 - L2 LINE L2 0 3313 3124 363 336 9 0 chr15 42447899 42448012 -58932509 - MER81 DNA DNA 0 114 1 1882 248 82 44 chr15 42451021 42451755 -58928766 - L1ME LINE L1 -5263 807 46 1889 161 0 33 chr15 42451866 42452171 -58928350 + AluSx SINE Alu 1 295 -17 2691 193 58 28 chr15 42453109 42453725 -58926796 - LTR27 LTR ERV1 0 636 2 292 330 127 22 chr15 42453970 42454195 -58926326 - MIR SINE MIR -1 261 18 318 278 44 0 chr15 42454765 42454855 -58925666 + MIR3 SINE MIR 104 197 -11 21 0 0 0 chr15 42455499 42455520 -58925001 + AT_rich Low_complexity Low_complexity 1 21 0 9503 144 171 12 chr15 42456998 42458727 -58921794 + L1PA12 LINE L1 1 2004 -5577 3064 271 125 6 chr15 42458725 42459547 -58920974 + L1PA13 LINE L1 339 1258 -5529 * 500 204 0 0 chr15 42459550 42459638 -58920883 + L1PA13 LINE L1 1396 1483 -5304 * 2206 181 18 0 chr15 42459637 42460080 -58920441 + L1PA13 LINE L1 3461 3911 -2886 * 5009 96 13 4 chr15 42460075 42460786 -58919735 + L1PA10 LINE L1 5436 6152 -16 15095 208 22 30 chr15 42460926 42465219 -58915302 - L1P3 LINE L1 -2185 4276 8 2003 221 29 58 chr15 42465228 42465851 -58914670 - L1M4 LINE L1 -782 5364 4760 313 118 0 0 chr15 42465886 42465937 -58914584 - L1MA8 LINE L1 -5 6286 6236 3832 179 7 31 chr15 42466008 42466964 -58913557 - L1MA4 LINE L1 -181 6110 5160 1901 189 27 2 chr15 42466957 42467365 -58913156 + L1MA4 LINE L1 4735 5152 -994 * 6794 232 84 22 chr15 42467359 42470672 -58909849 - L1MA8 LINE L1 -48 6243 2718 2408 87 0 6 chr15 42471587 42471899 -58908622 + AluY SINE Alu 1 310 -1 265 268 0 12 chr15 42472627 42472709 -58907812 - LTR16C LTR ERVL -4 487 407 26 64 0 0 chr15 42473384 42473431 -58907090 + AT_rich Low_complexity Low_complexity 1 47 0 2044 128 4 0 chr15 42473465 42473772 -58906749 + AluSx SINE Alu 1 308 0 190 235 59 123 chr15 42473985 42474172 -58906349 - L3 LINE CR1 -182 1395 1221 249 33 0 0 chr15 42474438 42474468 -58906053 + (T)n Simple_repeat Simple_repeat 1 30 0 359 323 39 43 chr15 42474817 42475227 -58905294 - MLT2F LTR ERVL 0 663 211 2453 117 13 122 chr15 42475888 42476278 -58904243 + LTR12 LTR ERV1 1 317 -397 1811 84 26 131 chr15 42476278 42476621 -58903900 - AluYb8 SINE Alu -1 307 1 2453 117 13 122 chr15 42476621 42476770 -58903751 + LTR12 LTR ERV1 317 481 -233 270 262 54 7 chr15 42477331 42477546 -58902975 + (TTTAA)n Simple_repeat Simple_repeat 1 225 0 3082 144 71 76 chr15 42478571 42479364 -58901157 - L1MA9 LINE L1 -2 6310 5522 3917 203 36 18 chr15 42479471 42480812 -58899709 - L1PA13 LINE L1 -4023 2774 1397 3681 214 55 25 chr15 42481000 42481865 -58898656 - L1PA13 LINE L1 -5895 892 2 623 292 63 47 chr15 42482195 42483145 -58897376 - L1MEd LINE L1 -4705 1605 602 225 309 143 37 chr15 42483190 42483407 -58897114 - L1MEd LINE L1 -5612 507 268 336 330 76 13 chr15 42483745 42484048 -58896473 - L1ME LINE L1 -348 5773 5452 261 231 356 0 chr15 42485859 42485967 -58894554 + MIR SINE MIR 37 180 -28 829 298 59 58 chr15 42486410 42487015 -58893506 + L2 LINE L2 2642 3305 -8 3843 122 64 73 chr15 42487380 42488161 -58892360 + LTR1 LTR ERV1 12 785 0 1295 55 114 64 chr15 42488963 42489182 -58891339 + MER30 DNA MER1_type 1 230 0 2155 131 0 10 chr15 42490397 42490702 -58889819 + AluSx SINE Alu 3 304 -8 211 329 57 0 chr15 42490892 42490962 -58889559 + MIR SINE MIR 39 112 -150 2136 106 3 14 chr15 42491142 42491434 -58889087 + AluSg SINE Alu 1 289 -21 555 262 85 13 chr15 42491452 42491644 -58888877 + MIR SINE MIR 15 221 -41 665 296 126 14 chr15 42492753 42492976 -58887545 + MIR SINE MIR 14 261 -1 320 323 10 0 chr15 42493233 42493329 -58887192 - MIR SINE MIR -111 151 55 207 0 0 0 chr15 42494376 42494399 -58886122 + (T)n Simple_repeat Simple_repeat 1 23 0 424 249 62 110 chr15 42495355 42495628 -58884893 - MER112 DNA MER1_type 0 260 1 280 133 48 24 chr15 42496240 42496323 -58884198 + (TA)n Simple_repeat Simple_repeat 1 85 0 412 342 49 4 chr15 42496686 42496911 -58883610 + LTR16C LTR ERVL 4 238 -253 3870 226 75 43 chr15 42496917 42498003 -58882518 + MLT1A1-int LTR MaLR 616 1735 0 1896 174 22 16 chr15 42498003 42498366 -58882155 + MLT1A1 LTR MaLR 1 365 0 2009 138 0 0 chr15 42498375 42498666 -58881855 + AluSx SINE Alu 1 291 -21 369 0 0 0 chr15 42500101 42500142 -58880379 + (TG)n Simple_repeat Simple_repeat 2 42 0 463 265 235 10 chr15 42500440 42500636 -58879885 - MIR SINE MIR -3 259 20 329 329 29 15 chr15 42500842 42500979 -58879542 + MIR SINE MIR 121 259 -3 219 311 48 17 chr15 42501008 42501145 -58879376 - MIR SINE MIR -64 144 15 212 300 0 0 chr15 42502320 42502370 -58878151 - L2 LINE L2 -4 3268 3219 569 211 126 53 chr15 42504390 42504559 -58875962 + MER5A DNA MER1_type 4 186 -3 1445 209 78 62 chr15 42505017 42505266 -58875255 - MLT1D LTR MaLR 0 505 261 2161 136 0 0 chr15 42505266 42505567 -58874954 - AluSx SINE Alu -9 303 3 1445 209 78 62 chr15 42505567 42505814 -58874707 - MLT1D LTR MaLR -244 261 1 413 228 53 18 chr15 42506256 42506370 -58874151 - MIR3 SINE MIR -7 201 84 305 174 196 0 chr15 42507988 42508080 -58872441 + L1ME4a LINE L1 5974 6083 -38 691 285 88 0 chr15 42509363 42509591 -58870930 + MIR SINE MIR 15 262 0 209 57 29 0 chr15 42509687 42509722 -58870799 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 597 291 69 34 chr15 42509829 42510079 -58870442 - MIR SINE MIR 0 262 9 222 290 18 41 chr15 42510840 42511009 -58869512 + (CTTAT)n Simple_repeat Simple_repeat 3 167 0 * 317 262 16 44 chr15 42510883 42511066 -58869455 + T-rich Low_complexity Low_complexity 2 179 0 396 252 67 0 chr15 42512090 42512209 -58868312 + MIR SINE MIR 65 191 -71 322 279 201 0 chr15 42513431 42513585 -58866936 - MIR SINE MIR -15 247 63 22 0 0 0 chr15 42515649 42515671 -58864850 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr15 42515963 42515987 -58864534 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr15 42516042 42516070 -58864451 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr15 42516144 42516176 -58864345 + AT_rich Low_complexity Low_complexity 1 32 0 905 336 78 15 chr15 42516783 42517244 -58863277 - MLT2F LTR ERVL -157 506 17 1027 285 55 4 chr15 42517481 42518071 -58862450 - ERVL-F LTR ERVL -329 5435 4782 2696 233 45 34 chr15 42518131 42519394 -58861127 - L1ME1 LINE L1 -5 6397 5124 2343 71 0 52 chr15 42519394 42519719 -58860802 - AluY SINE Alu -3 308 1 386 276 15 4 chr15 42519777 42519924 -58860597 - L1ME1 LINE L1 -3857 2525 2381 23 33 0 0 chr15 42519944 42519974 -58860547 + AT_rich Low_complexity Low_complexity 1 30 0 348 288 40 68 chr15 42520303 42520626 -58859895 - MLT1I LTR MaLR -8 401 88 681 295 36 39 chr15 42521957 42522216 -58858305 + MIR SINE MIR 16 261 -1 183 391 0 0 chr15 42522248 42522317 -58858204 + L2 LINE L2 2275 2343 -971 27 29 0 0 chr15 42523315 42523349 -58857172 + AT_rich Low_complexity Low_complexity 1 34 0 243 221 26 0 chr15 42523917 42523994 -58856527 + (TA)n Simple_repeat Simple_repeat 1 79 0 6814 44 1 0 chr15 42524254 42525090 -58855431 - L1P LINE L1 -1932 4214 3378 4924 30 0 0 chr15 42525090 42525663 -58854858 + L1PA3 LINE L1 5579 6152 -3 266 86 0 0 chr15 42525746 42525781 -58854740 + Tigger1 DNA MER2_type 2061 2095 -323 2369 189 6 2 chr15 42526596 42527103 -58853418 - L1PA16 LINE L1 -1336 4810 4302 2071 216 12 12 chr15 42527101 42527583 -58852938 + L1PA16 LINE L1 4804 5285 -861 * 636 105 0 32 chr15 42527592 42527687 -58852834 + FLAM_C SINE Alu 36 127 -16 4823 150 6 4 chr15 42527689 42528476 -58852045 + L1PA16 LINE L1 5340 6128 -38 1078 179 26 33 chr15 42528515 42528788 -58851733 - L1MB7 LINE L1 0 6184 5914 23 33 0 0 chr15 42528797 42528827 -58851694 + AT_rich Low_complexity Low_complexity 1 30 0 1128 185 45 0 chr15 42528840 42529062 -58851459 - L1MB7 LINE L1 -265 5919 5688 907 184 65 5 chr15 42529053 42529270 -58851251 - L1MB7 LINE L1 -1006 5140 4911 * 387 211 0 0 chr15 42530173 42530268 -58850253 + (TA)n Simple_repeat Simple_repeat 1 95 0 309 278 0 22 chr15 42530270 42530360 -58850161 - L1MC4 LINE L1 -1339 6703 6616 207 235 0 44 chr15 42530363 42530431 -58850090 + (TATG)n Simple_repeat Simple_repeat 4 68 0 396 332 197 0 chr15 42531318 42531511 -58849010 + MIR SINE MIR 14 244 -18 5414 45 3 3 chr15 42531573 42532247 -58848274 - L1PA3 LINE L1 -2 6153 5480 1573 109 0 5 chr15 42532369 42532590 -58847931 + AluSc SINE Alu 82 301 -8 404 234 114 13 chr15 42532633 42532791 -58847730 + L1MC4a LINE L1 5738 5911 -1897 491 202 8 0 chr15 42532912 42533031 -58847490 + (TA)n Simple_repeat Simple_repeat 1 120 0 393 300 46 8 chr15 42533049 42533179 -58847342 - MIR SINE MIR -88 174 40 1622 224 74 2 chr15 42533505 42533912 -58846609 - MER63B DNA MER1_type 0 436 1 2393 87 0 0 chr15 42534159 42534468 -58846053 - AluY SINE Alu -2 309 1 1539 93 9 0 chr15 42534700 42534914 -58845607 - AluSg/x SINE Alu -10 302 87 505 353 75 18 chr15 42535015 42535454 -58845067 - L2 LINE L2 -1015 2299 1836 396 59 0 0 chr15 42535822 42535873 -58844648 + (CA)n Simple_repeat Simple_repeat 1 51 0 1729 163 30 7 chr15 42536677 42536978 -58843543 + AluJb SINE Alu 1 308 -4 287 281 0 97 chr15 42537865 42537937 -58842584 - MIR SINE MIR 0 262 203 2287 93 3 0 chr15 42537937 42538238 -58842283 - AluSq SINE Alu -11 302 1 287 281 0 97 chr15 42538238 42538279 -58842242 - MIR SINE MIR -59 203 160 306 314 140 69 chr15 42538512 42539265 -58841256 + L2 LINE L2 2405 3262 -10 535 368 104 35 chr15 42539282 42540079 -58840442 + L2 LINE L2 2229 3086 -186 226 134 0 75 chr15 42542165 42542232 -58838289 + (TTTTTA)n Simple_repeat Simple_repeat 3 64 0 331 300 42 33 chr15 42542698 42542818 -58837703 + L2 LINE L2 3191 3311 -2 278 352 94 8 chr15 42543108 42543236 -58837285 + L2 LINE L2 3132 3270 -2 214 329 162 18 chr15 42544233 42544400 -58836121 - L3b LINE CR1 -210 1373 1183 353 307 13 0 chr15 42545559 42545634 -58834887 + MER91A DNA MER1_type 2 77 -119 1680 149 60 46 chr15 42547472 42547633 -58832888 + THE1C LTR MaLR 1 158 -217 1975 83 8 0 chr15 42547633 42547886 -58832635 - AluSq SINE Alu -9 304 50 1680 149 60 46 chr15 42547886 42548094 -58832427 + THE1C LTR MaLR 158 375 0 547 271 7 7 chr15 42548153 42548297 -58832224 + MIR3 SINE MIR 60 203 -5 22 0 0 0 chr15 42548846 42548868 -58831653 + AT_rich Low_complexity Low_complexity 1 22 0 479 211 0 10 chr15 42549660 42549764 -58830757 - MIR SINE MIR 0 262 160 272 368 14 49 chr15 42550483 42550627 -58829894 + MIR SINE MIR 29 167 -95 35 41 0 0 chr15 42550740 42550789 -58829732 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr15 42551107 42551135 -58829386 + AT_rich Low_complexity Low_complexity 1 28 0 197 306 0 0 chr15 42552061 42552110 -58828411 - MER5B DNA MER1_type -129 49 1 1501 167 46 25 chr15 42553023 42553305 -58827216 - AluJo SINE Alu -15 297 10 1113 299 144 11 chr15 42555819 42556529 -58823992 + L2 LINE L2 2497 3310 -3 219 221 47 35 chr15 42556909 42556995 -58823526 - MIR SINE MIR -46 216 130 2903 164 44 2 chr15 42557472 42558014 -58822507 - L1MC3 LINE L1 -8 7777 7213 22 35 0 0 chr15 42558405 42558434 -58822087 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 42558510 42558532 -58821989 + AT_rich Low_complexity Low_complexity 1 22 0 1228 202 0 18 chr15 42561786 42562009 -58818512 - AluJo SINE Alu -93 219 1 4614 135 12 1 chr15 42562285 42563033 -58817488 - L1PA16 LINE L1 0 6166 5411 1433 202 24 9 chr15 42563134 42563471 -58817050 - L1PA16 LINE L1 -1320 4826 4485 12356 238 41 23 chr15 42563734 42568788 -58811733 + L1PA15 LINE L1 808 5951 -1633 811 195 38 5 chr15 42568788 42568973 -58811548 + L1PA15 LINE L1 6318 6508 -1076 5257 130 28 6 chr15 42568975 42569830 -58810691 + L1PA15 LINE L1 6723 7596 -7 487 222 0 0 chr15 42569970 42570060 -58810461 - AluS SINE Alu -223 90 1 2367 94 0 0 chr15 42570552 42570860 -58809661 + AluSc SINE Alu 1 308 -1 3391 74 37 8 chr15 42570932 42571419 -58809102 - L1PA7 LINE L1 -1 6153 5653 3315 66 0 0 chr15 42571419 42571861 -58808660 + L1P LINE L1 4861 5302 -844 7211 174 23 16 chr15 42572522 42572808 -58807713 - L1MA4 LINE L1 0 7362 7080 2250 112 0 6 chr15 42572808 42573122 -58807399 - AluSx SINE Alu 0 312 1 7211 174 23 16 chr15 42573122 42574371 -58806150 - L1MA4 LINE L1 -282 7080 5836 182 37 37 0 chr15 42574371 42574398 -58806123 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7211 174 23 16 chr15 42574398 42575300 -58805221 - L1MA4 LINE L1 -1526 5836 4942 6360 89 12 0 chr15 42575300 42576491 -58804030 - L1PA10 LINE L1 -2 6166 4979 2285 188 12 82 chr15 42576506 42577076 -58803445 - L1P3 LINE L1 -5302 1159 630 5415 236 58 38 chr15 42577078 42578949 -58801572 - L1MA4 LINE L1 -2256 4952 3255 2161 102 0 11 chr15 42578949 42579255 -58801266 + AluSg SINE Alu 1 303 0 5415 236 58 38 chr15 42579255 42580846 -58799675 - L1MA4 LINE L1 -3953 3255 1699 1333 311 64 37 chr15 42581051 42581757 -58798764 - L1MA4 LINE L1 -6164 1045 10 327 307 100 42 chr15 42581886 42582517 -58798004 + L1ME3A LINE L1 5293 5944 -226 2104 125 0 7 chr15 42582960 42583257 -58797264 - AluSg SINE Alu -15 295 1 22 0 0 0 chr15 42583305 42583327 -58797194 + AT_rich Low_complexity Low_complexity 1 22 0 327 336 8 0 chr15 42583341 42583469 -58797052 + (CA)n Simple_repeat Simple_repeat 2 130 0 1979 144 21 0 chr15 42583568 42583908 -58796613 - L1PA13 LINE L1 -14 6149 5803 976 203 147 0 chr15 42585819 42586085 -58794436 + MER33 DNA MER1_type 1 305 -19 434 300 0 0 chr15 42586122 42586242 -58794279 - MER103 DNA DNA -46 120 1 589 303 23 46 chr15 42586752 42586970 -58793551 - MIR SINE MIR 0 262 50 350 321 92 41 chr15 42587940 42588211 -58792310 + ERVL LTR ERVL 3412 3696 -2068 968 328 63 11 chr15 42588215 42588566 -58791955 - LTR16A LTR ERVL -5 445 77 1152 291 138 54 chr15 42588584 42589422 -58791099 + ERVL LTR ERVL 3763 4671 -1093 432 342 75 12 chr15 42589657 42589988 -58790533 + ERVL LTR ERVL 5016 5413 -290 272 211 70 28 chr15 42590969 42591040 -58789481 + LTR67 LTR ERVL 110 183 -374 9525 57 17 1 chr15 42591058 42592294 -58788227 - L1PA4 LINE L1 -3265 2881 1626 19616 47 6 0 chr15 42592294 42595554 -58784967 + L1PA4 LINE L1 2876 6147 -8 564 320 39 58 chr15 42595576 42595935 -58784586 + LTR67 LTR ERVL 206 557 0 2020 147 3 3 chr15 42596585 42596884 -58783637 + AluSx SINE Alu 1 299 -13 901 265 100 0 chr15 42598385 42598645 -58781876 + LTR16A1 LTR ERVL 168 453 -4 191 322 8 68 chr15 42598650 42598768 -58781753 - L2 LINE L2 -229 3043 2933 2770 154 38 7 chr15 42598825 42599697 -58780824 - L1PB4 LINE L1 -43 6113 5068 233 347 94 28 chr15 42600006 42600219 -58780302 + L2 LINE L2 2812 3038 -234 971 221 18 4 chr15 42600270 42600496 -58780025 - AluJo SINE Alu -2 310 82 337 280 193 20 chr15 42601008 42601158 -58779363 + MIR SINE MIR 8 183 -79 7991 28 0 0 chr15 42602076 42603051 -58777470 - L1P LINE L1 -2572 3574 2600 4973 16 7 0 chr15 42603051 42603625 -58776896 + L1PA2 LINE L1 5578 6155 0 226 364 155 35 chr15 42604076 42604450 -58776071 + L2 LINE L2 2340 2758 -556 183 220 0 0 chr15 42604623 42604673 -58775848 + GA-rich Low_complexity Low_complexity 2 51 0 18648 29 0 0 chr15 42606849 42609095 -58771426 + L1P LINE L1 3158 5403 -743 23 54 0 0 chr15 42609639 42609676 -58770845 + AT_rich Low_complexity Low_complexity 1 37 0 182 37 37 0 chr15 42609957 42609984 -58770537 + (TC)n Simple_repeat Simple_repeat 1 28 0 362 275 80 29 chr15 42610029 42610167 -58770354 - L3b LINE CR1 -192 1391 1247 1652 300 55 27 chr15 42610617 42611728 -58768793 + L1ME2 LINE L1 45 1058 -4920 1163 310 28 15 chr15 42611734 42612263 -58768258 + L1ME2 LINE L1 4463 4998 -1082 1982 250 102 33 chr15 42612278 42613190 -58767331 + L1ME2 LINE L1 5118 6098 0 253 311 0 0 chr15 42613255 42613329 -58767192 + L1MC4 LINE L1 7928 8001 -41 2181 89 45 0 chr15 42613394 42613685 -58766836 + AluSq SINE Alu 1 304 -9 40325 74 5 2 chr15 42613887 42620024 -58760497 + L1PA5 LINE L1 2 6153 -1 1563 251 117 21 chr15 42620008 42620703 -58759818 + L1ME1 LINE L1 5316 6136 -30 * 1364 165 37 0 chr15 42621385 42621657 -58758864 - L1MA8 LINE L1 -5 6286 6005 190 0 67 0 chr15 42621995 42622025 -58758496 + (TGGGGG)n Simple_repeat Simple_repeat 5 36 0 35 24 0 0 chr15 42623033 42623075 -58757446 + AT_rich Low_complexity Low_complexity 1 42 0 298 297 0 25 chr15 42623165 42623244 -58757277 + (CATATA)n Simple_repeat Simple_repeat 4 81 -37 1858 181 83 10 chr15 42623244 42623641 -58756880 - MSTB LTR MaLR 0 426 1 298 297 0 25 chr15 42623641 42623679 -58756842 + (CATATA)n Simple_repeat Simple_repeat 81 118 0 14464 129 29 13 chr15 42623694 42624000 -58756521 + Tigger1 DNA MER2_type 17 317 -2101 189 0 0 0 chr15 42624000 42624021 -58756500 + (TC)n Simple_repeat Simple_repeat 2 22 0 14464 129 29 13 chr15 42624021 42626078 -58754443 + Tigger1 DNA MER2_type 317 2418 0 24 32 0 0 chr15 42626394 42626425 -58754096 + AT_rich Low_complexity Low_complexity 1 31 0 2252 60 0 0 chr15 42626491 42626776 -58753745 - L1PA5 LINE L1 -4 6150 5866 32 0 0 0 chr15 42626781 42626813 -58753708 + AT_rich Low_complexity Low_complexity 1 32 0 514 260 109 82 chr15 42627058 42627362 -58753159 - L3 LINE CR1 -2 1575 1264 462 342 53 16 chr15 42627861 42628051 -58752470 + MIR SINE MIR 31 227 -35 201 132 0 0 chr15 42628535 42628573 -58751948 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 195 296 169 28 chr15 42628688 42628830 -58751691 - L2 LINE L2 -189 3083 2922 395 379 25 15 chr15 42629451 42629654 -58750867 - L2 LINE L2 -557 2757 2553 342 333 32 0 chr15 42629660 42629876 -58750645 + L1M4 LINE L1 4001 4223 -1923 354 289 70 44 chr15 42630266 42630494 -58750027 + MLT1L LTR MaLR 153 386 -229 275 299 170 51 chr15 42630541 42630936 -58749585 - L2 LINE L2 -1136 2178 1737 450 267 19 43 chr15 42632362 42632523 -58747998 + MIR3 SINE MIR 47 203 -5 5081 147 8 4 chr15 42633476 42634302 -58746219 - L1PA16 LINE L1 0 6166 5337 3105 212 24 4 chr15 42634296 42634998 -58745523 + L1PA16 LINE L1 4637 5352 -794 * 315 294 14 21 chr15 42635170 42635306 -58745215 + MIR SINE MIR 20 152 -73 198 0 0 0 chr15 42635554 42635576 -58744945 + (TA)n Simple_repeat Simple_repeat 2 23 0 233 236 0 0 chr15 42635576 42635631 -58744890 + T-rich Low_complexity Low_complexity 1 55 0 7360 18 0 1 chr15 42635650 42636507 -58744014 - L1PA3 LINE L1 -4 6151 5297 352 271 173 28 chr15 42636939 42637153 -58743368 + MIR SINE MIR 3 247 -15 1961 311 46 22 chr15 42637488 42638494 -58742027 - L1MEc LINE L1 -5349 1047 18 280 216 0 0 chr15 42638621 42638672 -58741849 - LTR33 LTR ERVL -392 129 79 227 304 0 0 chr15 42638684 42638740 -58741781 - MER81 DNA DNA -14 100 45 401 247 0 0 chr15 42638759 42638844 -58741677 - LTR33 LTR ERVL -436 85 1 1217 296 29 17 chr15 42639094 42639513 -58741008 - LTR16A LTR ERVL -5 445 22 479 249 140 9 chr15 42640201 42640514 -58740007 - MLT1J2 LTR MaLR -14 432 67 410 226 239 13 chr15 42640594 42640749 -58739772 - L1MEd LINE L1 -5928 191 2 346 217 0 0 chr15 42640823 42640883 -58739638 + L2 LINE L2 3205 3264 -8 296 274 94 0 chr15 42641787 42641893 -58738628 + MIR3 SINE MIR 87 202 -6 254 274 36 12 chr15 42643188 42643272 -58737249 - MLT1J LTR MaLR -197 314 229 235 295 0 0 chr15 42643370 42643431 -58737090 - MLT1J2 LTR MaLR -318 132 72 438 229 35 2 chr15 42646295 42646429 -58734092 - L1MD3 LINE L1 0 7995 6221 422 291 52 39 chr15 42646533 42646763 -58733758 - Charlie7 DNA MER1_type -1876 736 500 6839 70 6 1 chr15 42646763 42647692 -58732829 + L1PA7 LINE L1 5222 6154 0 422 291 52 39 chr15 42647692 42647767 -58732754 - Charlie7 DNA MER1_type -2112 500 427 428 300 58 53 chr15 42648132 42648322 -58732199 - MIR SINE MIR -60 202 12 387 200 30 115 chr15 42648862 42649067 -58731454 - MER69 DNA AcHobo -2 2524 1 21 36 0 0 chr15 42649373 42649401 -58731120 + AT_rich Low_complexity Low_complexity 1 28 0 493 245 0 0 chr15 42650370 42650468 -58730053 - Tigger7 DNA MER2_type 0 2487 2390 1302 198 0 17 chr15 42650477 42650714 -58729807 - Tigger7 DNA MER2_type -469 264 32 22 0 0 0 chr15 42651377 42651399 -58729122 + AT_rich Low_complexity Low_complexity 1 22 0 1263 249 35 51 chr15 42651693 42652184 -58728337 - Charlie7 DNA MER1_type -1282 1330 848 321 182 23 23 chr15 42652194 42652326 -58728195 + (TA)n Simple_repeat Simple_repeat 2 133 0 640 233 6 43 chr15 42652346 42652509 -58728012 - L1MD2 LINE L1 -24 6335 6179 423 275 63 22 chr15 42652520 42652739 -58727782 - Charlie7 DNA MER1_type -1793 819 592 3236 138 67 52 chr15 42652739 42653355 -58727166 + MER51A LTR ERV1 1 625 -9 525 271 103 43 chr15 42653421 42653772 -58726749 - Charlie7 DNA MER1_type -2059 553 182 1981 103 0 8 chr15 42654112 42654374 -58726147 + AluSc SINE Alu 35 294 -15 276 77 0 0 chr15 42655609 42655648 -58724873 + (TATTG)n Simple_repeat Simple_repeat 1 39 0 459 280 19 37 chr15 42655694 42655882 -58724639 - MER63A DNA MER1_type -9 201 44 781 317 125 8 chr15 42656132 42656523 -58723998 - LTR33 LTR ERVL -84 437 1 761 271 19 5 chr15 42656897 42657104 -58723417 - MER63A DNA MER1_type 0 210 1 1780 168 12 40 chr15 42657344 42657671 -58722850 + MER34B LTR ERV1 14 331 -234 28 48 0 0 chr15 42658392 42658434 -58722087 + AT_rich Low_complexity Low_complexity 1 42 0 670 311 55 13 chr15 42658550 42658788 -58721733 + MIR SINE MIR 15 262 0 28 0 0 0 chr15 42659119 42659147 -58721374 + AT_rich Low_complexity Low_complexity 1 28 0 333 297 94 0 chr15 42659159 42659297 -58721224 + HAL1b LINE L1 1191 1341 -7 473 303 70 12 chr15 42659555 42659799 -58720722 - MIR SINE MIR -2 260 3 406 205 13 13 chr15 42660934 42661012 -58719509 - L3b LINE CR1 -262 1321 1244 242 320 0 31 chr15 42662423 42662551 -58717970 + (TATATG)n Simple_repeat Simple_repeat 3 126 0 720 193 0 0 chr15 42662551 42662670 -58717851 + MER82 DNA MER2_type 1 119 -534 6939 60 8 0 chr15 42662672 42664352 -58716169 + L1PA7 LINE L1 4465 6154 0 2973 235 36 30 chr15 42664854 42665745 -58714776 - L1ME1 LINE L1 -4 6162 5267 261 0 0 0 chr15 42665855 42665884 -58714637 + (TA)n Simple_repeat Simple_repeat 2 30 0 998 201 58 33 chr15 42665884 42666158 -58714363 - L1ME1 LINE L1 -894 5252 4972 716 164 427 37 chr15 42666160 42666480 -58714041 + MER31A LTR ERV1 3 197 -346 840 163 107 46 chr15 42666480 42666676 -58713845 - MER6B DNA MER2_type -1 209 2 716 164 427 37 chr15 42666676 42666735 -58713786 + MER31A LTR ERV1 197 543 0 1580 253 75 5 chr15 42666735 42667331 -58713190 - L1ME1 LINE L1 -1171 4975 4338 971 112 42 75 chr15 42667347 42667561 -58712960 - L1MA9 LINE L1 0 6312 6106 2108 166 46 69 chr15 42667570 42668089 -58712432 - L1MA9 LINE L1 -30 6282 5776 288 111 0 0 chr15 42668117 42668162 -58712359 + (CA)n Simple_repeat Simple_repeat 2 46 0 248 147 0 0 chr15 42668164 42668198 -58712323 - Tigger1 DNA MER2_type 0 2418 2385 4011 211 86 24 chr15 42668213 42669327 -58711194 - L1 LINE L1 -1743 4403 3221 804 193 12 6 chr15 42669401 42669572 -58710949 - L1MD3 LINE L1 -2 7993 7822 353 209 0 0 chr15 42669584 42669651 -58710870 - Charlie2 DNA MER1_type -878 1984 1918 758 234 26 9 chr15 42669660 42669887 -58710634 - L1ME1 LINE L1 -1832 4314 4084 2377 209 32 18 chr15 42670007 42670696 -58709825 - L1M4 LINE L1 -388 5796 5093 979 209 114 74 chr15 42670696 42671074 -58709447 + MSTD LTR MaLR 3 395 -1 2377 209 32 18 chr15 42671074 42671252 -58709269 - L1M4 LINE L1 -1091 5093 4919 1338 229 74 26 chr15 42671252 42671873 -58708648 - L1M4 LINE L1 -2358 3788 3138 275 385 8 8 chr15 42671921 42672043 -58708478 - L2 LINE L2 -1 3271 3150 349 268 71 8 chr15 42672578 42672705 -58707816 - MIR SINE MIR 0 262 128 224 231 19 0 chr15 42672715 42672767 -58707754 + (TG)n Simple_repeat Simple_repeat 1 53 0 22 56 0 0 chr15 42673543 42673579 -58706942 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr15 42674600 42674629 -58705892 + AT_rich Low_complexity Low_complexity 1 29 0 457 345 14 5 chr15 42677561 42677770 -58702751 + LTR37B LTR ERV1 6 216 -252 408 253 77 84 chr15 42677798 42678071 -58702450 + LTR37B LTR ERV1 196 466 -2 3009 192 61 0 chr15 42678742 42678878 -58701643 - L1PBb LINE L1 -5115 1089 963 2000 107 43 7 chr15 42678878 42679177 -58701344 - AluSg SINE Alu 0 310 1 3009 192 61 0 chr15 42679177 42679660 -58700861 - L1PBb LINE L1 -5241 963 432 2821 111 35 36 chr15 42679656 42680178 -58700343 + L1PB2 LINE L1 1760 2280 -4583 * 13098 180 28 23 chr15 42680174 42681277 -58699244 + L1PB2 LINE L1 2842 3937 -2930 2216 109 0 26 chr15 42681277 42681588 -58698933 + AluSg SINE Alu 3 305 -5 13098 180 28 23 chr15 42681588 42683098 -58697423 + L1PB2 LINE L1 3937 5437 -1430 2042 111 0 0 chr15 42683098 42683400 -58697121 + AluY SINE Alu 1 302 0 13098 180 28 23 chr15 42683400 42683851 -58696670 + L1PB2 LINE L1 5437 5884 -983 405 0 0 0 chr15 42683851 42683896 -58696625 + (TAA)n Simple_repeat Simple_repeat 2 46 0 13098 180 28 23 chr15 42683896 42684827 -58695694 + L1PB2 LINE L1 5884 6861 -6 265 275 99 75 chr15 42686006 42686247 -58694274 - MIR SINE MIR -6 256 22 228 255 87 106 chr15 42686826 42686987 -58693534 - MLT1J LTR MaLR -35 476 319 456 155 0 0 chr15 42687558 42687629 -58692892 - AluJ/FLAM SINE Alu -241 71 1 2469 29 7 23 chr15 42688395 42688703 -58691818 + AluY SINE Alu 1 303 -8 281 323 47 24 chr15 42689063 42689190 -58691331 + MIR SINE MIR 117 246 -16 7130 193 30 5 chr15 42689196 42691383 -58689138 + L1PA13 LINE L1 3922 6152 -11 2934 118 59 18 chr15 42692146 42692639 -58687882 - MER75 DNA T2_type 0 514 2 212 356 25 17 chr15 42693609 42693727 -58686794 + MIR SINE MIR 22 140 -68 498 239 34 0 chr15 42693845 42693962 -58686559 + MER45A DNA AcHobo 58 178 0 534 58 0 70 chr15 42694089 42694175 -58686346 - MADE1 DNA Mariner 0 80 1 221 219 97 70 chr15 42695587 42695701 -58684820 + L2 LINE L2 3197 3313 0 2073 120 3 3 chr15 42697389 42697681 -58682840 - AluSq SINE Alu -13 300 9 993 269 41 44 chr15 42697943 42698307 -58682214 + MLT1H1 LTR MaLR 1 363 -192 2451 73 0 0 chr15 42698631 42698933 -58681588 - AluY SINE Alu -9 302 1 2042 134 0 0 chr15 42700150 42700449 -58680072 + AluSx SINE Alu 13 311 -1 334 299 109 6 chr15 42700450 42700624 -58679897 + L1ME3A LINE L1 1287 1478 -4948 265 263 50 0 chr15 42700648 42700728 -58679793 - L1MA7 LINE L1 -6 6285 6202 * 11003 185 54 44 chr15 42700726 42700960 -58679561 - L1MA6 LINE L1 -152 6148 5918 2046 142 41 19 chr15 42700960 42701327 -58679194 + THE1C LTR MaLR 1 375 0 11003 185 54 44 chr15 42701327 42704581 -58675940 - L1MA6 LINE L1 -382 5918 2697 186 71 0 0 chr15 42704581 42704609 -58675912 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1670 162 4 0 chr15 42704616 42704881 -58675640 - AluSx SINE Alu -46 266 1 11003 185 54 44 chr15 42704881 42705065 -58675456 - L1MA6 LINE L1 -3608 2692 2429 541 316 41 39 chr15 42705064 42705476 -58675045 + L1ME3A LINE L1 1651 2063 -4544 * 220 183 21 0 chr15 42705536 42705629 -58674892 + (TA)n Simple_repeat Simple_repeat 1 95 0 600 278 56 44 chr15 42705642 42706121 -58674400 + L1ME3A LINE L1 2098 2582 -4025 372 256 23 23 chr15 42706130 42706259 -58674262 + L1ME2 LINE L1 39 167 -6229 621 299 10 0 chr15 42706291 42706495 -58674026 + L1ME2 LINE L1 4184 4389 -1826 9268 224 38 19 chr15 42706499 42710419 -58670102 + L1M1 LINE L1 7 4749 -2816 460 255 174 11 chr15 42710386 42710862 -58669659 + L1ME2 LINE L1 6325 6886 -697 * 386 38 0 19 chr15 42710866 42710919 -58669602 + (TA)n Simple_repeat Simple_repeat 1 52 0 238 125 25 0 chr15 42710939 42710979 -58669542 - L1ME LINE L1 -387 5779 5739 613 270 133 42 chr15 42710984 42711247 -58669274 + L1ME2 LINE L1 5939 6225 -8 772 324 98 19 chr15 42711410 42712189 -58668332 + L1ME3A LINE L1 4836 5675 -751 731 252 20 28 chr15 42712207 42712457 -58668064 + L1ME3A LINE L1 5736 5983 -467 298 270 11 0 chr15 42712531 42712620 -58667901 + L1ME3A LINE L1 6356 6445 -5 1524 175 7 21 chr15 42713048 42713334 -58667187 - MLT1B LTR MaLR -108 282 1 313 311 61 15 chr15 42713845 42713977 -58666544 + MLT1L LTR MaLR 476 613 -2 317 310 36 84 chr15 42715285 42715594 -58664927 - LTR16A LTR ERVL -126 324 18 2048 337 59 38 chr15 42715746 42716314 -58664207 - MERVL LTR ERVL -444 5320 4765 2095 107 0 10 chr15 42716314 42716614 -58663907 + AluY SINE Alu 1 297 -14 2048 337 59 38 chr15 42716614 42717867 -58662654 - MERVL LTR ERVL -999 4765 3437 423 369 19 0 chr15 42717950 42718155 -58662366 - MERVL LTR ERVL -2205 3280 3100 2550 223 114 27 chr15 42719135 42719980 -58660541 - L1ME1 LINE L1 -8 6158 5230 3972 207 14 3 chr15 42719985 42720866 -58659655 + L1ME1 LINE L1 4355 5244 -902 200 254 18 0 chr15 42720866 42720921 -58659600 + (TA)n Simple_repeat Simple_repeat 2 57 0 5491 97 1 4 chr15 42720923 42721699 -58658822 + L1PB1 LINE L1 5378 6151 0 3815 261 73 48 chr15 42721708 42723588 -58656933 - L1ME1 LINE L1 -902 5244 3318 4977 184 34 41 chr15 42723792 42725170 -58655351 - L1MC1 LINE L1 -5 7123 5759 43454 41 5 3 chr15 42725203 42731346 -58649175 - L1PA4 LINE L1 0 6155 2 3648 230 51 30 chr15 42731356 42732549 -58647972 - L1MC1 LINE L1 -1199 5742 4525 2111 284 63 20 chr15 42732563 42733742 -58646779 - L1M3de LINE L1 -5461 1192 23 * 6098 185 57 46 chr15 42733739 42734315 -58646206 - L1MC1 LINE L1 -4941 2000 1431 405 0 0 0 chr15 42734315 42734360 -58646161 + (TG)n Simple_repeat Simple_repeat 2 46 0 6098 185 57 46 chr15 42734360 42735252 -58645269 - L1MC1 LINE L1 -5510 1431 517 1223 211 75 14 chr15 42735234 42735594 -58644927 - L1MCc LINE L1 -3104 3837 3456 * 1595 254 99 52 chr15 42735595 42737775 -58642746 - L1MCc LINE L1 -3584 3357 921 240 245 47 47 chr15 42738089 42738195 -58642326 - L1MC1 LINE L1 -6104 319 214 2080 90 18 0 chr15 42739551 42739854 -58640667 - AluSp SINE Alu 0 308 1 228 278 62 31 chr15 42740368 42740465 -58640056 + MIR SINE MIR 161 260 -2 2538 54 0 0 chr15 42740767 42741062 -58639459 - AluY SINE Alu -8 303 9 257 175 123 0 chr15 42741072 42741129 -58639392 + MER69 DNA AcHobo 2463 2526 0 213 291 325 0 chr15 42741147 42741264 -58639257 - MER5A DNA MER1_type -8 181 27 344 352 0 0 chr15 42741761 42741869 -58638652 - MIR3 SINE MIR -32 176 69 195 333 71 71 chr15 42743028 42743196 -58637325 + MIR3 SINE MIR 14 181 -27 1833 215 39 60 chr15 42743213 42743786 -58636735 - L1MC4 LINE L1 0 8042 7481 2429 130 8 16 chr15 42743786 42744164 -58636357 - THE1C LTR MaLR 0 375 1 1833 215 39 60 chr15 42744164 42744186 -58636335 - L1MC4 LINE L1 -561 7481 7460 327 287 74 9 chr15 42744459 42744567 -58635954 + LTR16B LTR ERVL 350 464 0 556 219 0 0 chr15 42746702 42746816 -58633705 + MER96B DNA MER1_type? 294 407 -10 258 250 0 0 chr15 42747054 42747110 -58633411 + (CA)n Simple_repeat Simple_repeat 2 57 0 20636 159 39 20 chr15 42747563 42750333 -58630188 - L1MA2 LINE L1 0 7723 5008 1866 156 117 25 chr15 42750333 42750725 -58629796 - MSTA LTR MaLR 0 428 1 20636 159 39 20 chr15 42750725 42751419 -58629102 - L1MA2 LINE L1 -2715 5008 4329 1327 48 0 0 chr15 42751419 42751580 -58628941 + L1PA4 LINE L1 5989 6154 -1 20636 159 39 20 chr15 42751580 42755711 -58624810 - L1MA2 LINE L1 -3394 4329 1 1395 186 64 7 chr15 42757197 42757493 -58623028 - L1MA5 LINE L1 -24 6276 5964 378 289 37 84 chr15 42759213 42759403 -58621118 + MER102a DNA MER1_type 135 315 -15 2412 85 0 3 chr15 42760916 42761221 -58619300 + AluSg SINE Alu 1 304 -6 364 140 9 47 chr15 42763087 42763194 -58617327 + GA-rich Low_complexity Low_complexity 2 104 0 807 133 0 0 chr15 42764323 42764436 -58616085 + AluSq/x SINE Alu 1 113 -200 425 105 0 0 chr15 42764436 42764522 -58615999 + Alu SINE Alu 227 312 0 180 235 71 102 chr15 42764753 42764851 -58615670 + L2 LINE L2 407 501 -2813 323 344 48 8 chr15 42764954 42765079 -58615442 + MIR SINE MIR 35 164 -98 790 253 0 0 chr15 42765897 42766059 -58614462 - MER58A DNA MER1_type -24 200 39 3431 211 31 37 chr15 42766061 42766892 -58613629 + L1MD2 LINE L1 5523 6348 -11 338 294 49 0 chr15 42768185 42768287 -58612234 - MLT1K LTR MaLR -113 475 369 1682 131 36 0 chr15 42768500 42768752 -58611769 - AluSx SINE Alu -13 299 39 348 345 73 12 chr15 42768755 42768920 -58611601 - MIR SINE MIR -70 192 18 1700 273 85 22 chr15 42769148 42769981 -58610540 + L1ME1 LINE L1 5254 6161 -5 725 274 0 52 chr15 42770072 42770284 -58610237 - MER63A DNA MER1_type -9 201 1 347 246 70 81 chr15 42770479 42770679 -58609842 + MIR3 SINE MIR 13 206 -43 388 325 82 53 chr15 42771468 42771809 -58608712 + L3 LINE CR1 809 1159 -418 576 284 18 0 chr15 42773004 42773173 -58607348 + HAL1 LINE L1 1590 1761 -746 314 272 24 48 chr15 42773296 42773421 -58607100 + MER119 DNA MER1_type 462 583 0 706 258 59 56 chr15 42773433 42773825 -58606696 + HAL1 LINE L1 1766 2158 -349 1491 66 0 10 chr15 42773844 42774040 -58606481 + L1P3 LINE L1 5576 5769 -385 1311 148 30 4 chr15 42774035 42774265 -58606256 - L1MA4A LINE L1 -101 6202 5967 * 1421 176 20 9 chr15 42774265 42774655 -58605866 - LOR1a LTR ERV1 0 497 37 1011 160 48 5 chr15 42774671 42774858 -58605663 - L1MA4A LINE L1 -333 5970 5776 281 169 12 85 chr15 42774889 42774984 -58605537 - L1P5 LINE L1 -361 5795 5709 594 48 48 0 chr15 42774984 42775067 -58605454 + L1PA7 LINE L1 6066 6152 -2 195 42 0 0 chr15 42775117 42775141 -58605380 + (TG)n Simple_repeat Simple_repeat 2 25 0 252 281 134 18 chr15 42775143 42775307 -58605214 + HAL1 LINE L1 2239 2421 -86 31 44 0 0 chr15 42775385 42775430 -58605091 + AT_rich Low_complexity Low_complexity 1 45 0 8465 203 110 36 chr15 42775467 42777886 -58602635 - L1M2 LINE L1 -4261 2948 7 1005 261 146 23 chr15 42777918 42777987 -58602534 - L1MDb LINE L1 -4721 1685 1626 2107 177 53 7 chr15 42777987 42778400 -58602121 - MSTB1 LTR MaLR 0 432 1 1005 261 146 23 chr15 42778400 42779189 -58601332 - L1MDb LINE L1 -4780 1626 776 303 49 0 0 chr15 42779505 42779546 -58600975 + (CA)n Simple_repeat Simple_repeat 2 42 0 282 184 147 18 chr15 42781302 42781411 -58599110 - MIR SINE MIR -95 167 45 415 300 198 26 chr15 42781416 42781719 -58598802 + L2 LINE L2 1803 2157 -1157 366 319 87 22 chr15 42781873 42782058 -58598463 - L2 LINE L2 0 3313 3117 5463 114 51 6 chr15 42782328 42784035 -58596486 - L1PA14 LINE L1 -3 6158 4397 1367 200 0 0 chr15 42784197 42784427 -58596094 + AluJb SINE Alu 1 230 -82 248 323 118 63 chr15 42785866 42786120 -58594401 - L2 LINE L2 0 3272 3005 377 212 44 18 chr15 42786407 42786520 -58594001 - MIR3 SINE MIR -9 199 84 4850 162 16 15 chr15 42787097 42787955 -58592566 + MER6 DNA MER2_type 4 862 -3 360 0 0 0 chr15 42787957 42787997 -58592524 + (TG)n Simple_repeat Simple_repeat 1 40 0 22 0 0 0 chr15 42788759 42788781 -58591740 + AT_rich Low_complexity Low_complexity 1 22 0 1768 70 4 45 chr15 42788896 42789139 -58591382 - AluY SINE Alu -14 297 65 1676 177 159 5 chr15 42789161 42789533 -58590988 + MSTB1 LTR MaLR 4 432 0 324 0 0 0 chr15 42790352 42790388 -58590133 + (TG)n Simple_repeat Simple_repeat 2 37 0 345 82 0 0 chr15 42790427 42790476 -58590045 + (CACTA)n Simple_repeat Simple_repeat 2 50 0 2302 156 60 1 chr15 42790563 42791048 -58589473 - MER44D DNA MER2_type 0 605 9 1263 312 113 9 chr15 42792032 42792590 -58587931 + MLT2F LTR ERVL 48 663 0 185 276 92 13 chr15 42792769 42792845 -58587676 + MER5A DNA MER1_type 31 112 -77 213 312 26 26 chr15 42793815 42793892 -58586629 - L2 LINE L2 0 3313 3237 982 304 78 35 chr15 42794258 42794745 -58585776 + LTR33 LTR ERVL 12 519 -2 470 260 97 51 chr15 42794749 42794945 -58585576 - MIR SINE MIR -10 252 48 235 316 35 105 chr15 42797228 42797456 -58583065 + L1MEd LINE L1 447 658 -5461 2887 3 0 0 chr15 42797623 42797934 -58582587 + AluYa5 SINE Alu 1 311 0 289 267 48 79 chr15 42798000 42798165 -58582356 + L1MDa LINE L1 303 462 -5910 2547 261 94 60 chr15 42798488 42799509 -58581012 - L1MCc LINE L1 -2159 4782 3797 2126 103 3 7 chr15 42799509 42799801 -58580720 - AluSc SINE Alu -18 291 1 2547 261 94 60 chr15 42799801 42801648 -58578873 - L1MCc LINE L1 -3144 3797 1852 7712 25 1 0 chr15 42801659 42803323 -58577198 - L1PA3 LINE L1 0 6155 4491 9065 63 0 6 chr15 42803323 42804479 -58576042 + L1P LINE L1 13 1161 -4985 1117 297 110 39 chr15 42804485 42805432 -58575089 - L1MCc LINE L1 -4888 1535 654 1270 305 78 4 chr15 42805531 42805990 -58574531 - L1MCc LINE L1 -5913 510 18 1459 307 19 15 chr15 42806000 42806531 -58573990 - HERV16 LTR ERVL -3725 1271 739 989 313 36 8 chr15 42806542 42806900 -58573621 - HERV16 LTR ERVL -4628 368 1 540 296 105 53 chr15 42806928 42807232 -58573289 - LTR16A LTR ERVL -50 400 81 265 248 77 2 chr15 42807291 42807407 -58573114 + L1MDa LINE L1 1400 1601 -4781 2110 133 3 0 chr15 42807669 42807971 -58572550 + AluSx SINE Alu 1 303 -9 465 303 12 19 chr15 42807994 42808156 -58572365 + HERV16 LTR ERVL 2019 2179 -2817 311 281 74 16 chr15 42808162 42808283 -58572238 + HERV16 LTR ERVL 2421 2548 -3106 1146 356 18 21 chr15 42808429 42808967 -58571554 + HERV16 LTR ERVL 2659 3232 -1924 394 310 10 0 chr15 42809062 42809162 -58571359 - HERV16 LTR ERVL -4858 138 38 382 259 122 7 chr15 42809245 42809392 -58571129 - LTR16A LTR ERVL -54 396 233 724 213 78 104 chr15 42812532 42812879 -58567642 - L1M4 LINE L1 -2064 4082 3745 366 263 125 68 chr15 42813033 42813402 -58567119 - HAL1 LINE L1 -714 1793 1404 5041 141 18 27 chr15 42813403 42815107 -58565414 + L1PA15 LINE L1 4236 5953 -212 2638 101 25 3 chr15 42815107 42815474 -58565047 + THE1C LTR MaLR 1 375 0 9333 127 35 46 chr15 42815474 42817071 -58563450 + THE1C-int LTR MaLR 1 1580 0 2559 120 11 3 chr15 42817073 42817441 -58563080 + THE1C LTR MaLR 3 373 -2 5041 141 18 27 chr15 42817441 42817652 -58562869 + L1PA15 LINE L1 5953 6146 -19 410 394 74 17 chr15 42817903 42818200 -58562321 - L2 LINE L2 -17 3255 2942 256 309 71 0 chr15 42818230 42818314 -58562207 - L2 LINE L2 -4 3309 3220 21 0 0 0 chr15 42818536 42818557 -58561964 + AT_rich Low_complexity Low_complexity 1 21 0 668 295 78 26 chr15 42818983 42819414 -58561107 - L1ME3 LINE L1 -302 5819 5406 309 253 101 31 chr15 42820094 42820351 -58560170 - L1ME3 LINE L1 -1542 4604 4330 1508 55 6 0 chr15 42820361 42820576 -58559945 - AluY SINE Alu 0 313 98 271 411 39 9 chr15 42820644 42820875 -58559646 - L2 LINE L2 -635 2679 2442 765 228 76 0 chr15 42821961 42822145 -58558376 - MER3 DNA MER1_type -9 200 3 23 0 0 0 chr15 42827141 42827164 -58553357 + AT_rich Low_complexity Low_complexity 1 23 0 519 250 23 8 chr15 42827275 42827407 -58553114 - MIR SINE MIR -42 220 87 270 302 67 13 chr15 42827994 42828143 -58552378 - L1ME LINE L1 -365 5756 5600 317 167 0 0 chr15 42828274 42828322 -58552199 + Tigger5 DNA MER2_type 1 48 -2275 281 129 257 0 chr15 42828335 42828405 -58552116 + Tigger5 DNA MER2_type 2234 2321 -2 21 0 0 0 chr15 42829204 42829225 -58551296 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr15 42829336 42829369 -58551152 + AT_rich Low_complexity Low_complexity 1 33 0 198 0 0 0 chr15 42829701 42829723 -58550798 + (A)n Simple_repeat Simple_repeat 1 22 0 434 319 40 60 chr15 42830282 42830530 -58549991 - MIR SINE MIR -13 249 7 342 250 145 40 chr15 42830785 42830909 -58549612 + MIR SINE MIR 45 181 -81 241 291 204 19 chr15 42831078 42831284 -58549237 + L2 LINE L2 1793 2036 -1278 313 408 18 18 chr15 42831543 42831815 -58548706 + L2 LINE L2 2619 2890 -424 385 319 67 26 chr15 42831927 42832197 -58548324 + L2 LINE L2 3021 3301 -12 183 80 0 0 chr15 42832198 42832223 -58548298 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 183 342 66 40 chr15 42832262 42832414 -58548107 + L2 LINE L2 2060 2215 -1099 2243 110 0 0 chr15 42832711 42833010 -58547511 - AluSc SINE Alu -10 299 1 333 82 0 0 chr15 42836511 42836560 -58543961 + (TG)n Simple_repeat Simple_repeat 2 50 0 1047 270 42 44 chr15 42836833 42837240 -58543281 + LTR16A1 LTR ERVL 52 457 0 1142 272 40 45 chr15 42837269 42837740 -58542781 + Tigger8 DNA MER2_type 72 540 -126 782 296 47 25 chr15 42838059 42838376 -58542145 + LTR16B LTR ERVL 141 464 0 323 305 62 23 chr15 42838624 42838752 -58541769 + MIR SINE MIR 81 213 -49 641 286 66 8 chr15 42839496 42839737 -58540784 + LTR16A LTR ERVL 191 445 -5 34 24 0 0 chr15 42839999 42840040 -58540481 + AT_rich Low_complexity Low_complexity 1 41 0 656 318 85 8 chr15 42841210 42841446 -58539075 - MIR SINE MIR -7 255 2 271 331 77 8 chr15 42841576 42841706 -58538815 + L2 LINE L2 3174 3312 -1 258 179 0 0 chr15 42842162 42842218 -58538303 + GA-rich Low_complexity Low_complexity 3 58 0 236 287 66 48 chr15 42842800 42842816 -58537705 + L1MDa LINE L1 1624 1638 -4902 180 0 0 0 chr15 42842816 42842836 -58537685 + (CAA)n Simple_repeat Simple_repeat 2 21 0 236 287 66 48 chr15 42842836 42843091 -58537430 + L1MDa LINE L1 1638 1900 -4640 1384 229 87 63 chr15 42843328 42843821 -58536700 - MLT1D LTR MaLR 0 505 1 1762 218 107 22 chr15 42843971 42844476 -58536045 + L1ME2 LINE L1 5560 6107 -57 26 64 0 0 chr15 42845406 42845453 -58535068 + AT_rich Low_complexity Low_complexity 1 47 0 396 0 0 0 chr15 42846791 42846835 -58533686 + (TG)n Simple_repeat Simple_repeat 2 45 0 249 314 58 35 chr15 42846923 42847009 -58533512 - L2 LINE L2 -5 3267 3180 200 309 26 59 chr15 42848688 42848840 -58531681 - L2 LINE L2 -8 3305 3159 549 175 39 0 chr15 42849679 42849782 -58530739 + U6 snRNA snRNA 1 107 0 13943 199 45 5 chr15 42849782 42853990 -58526531 + L1MA5 LINE L1 2634 7001 -1 21 0 0 0 chr15 42854579 42854600 -58525921 + AT_rich Low_complexity Low_complexity 1 21 0 304 110 73 7 chr15 42854890 42855026 -58525495 + (TA)n Simple_repeat Simple_repeat 1 145 0 580 294 87 39 chr15 42857101 42857170 -58523351 - MIR SINE MIR -10 252 188 2169 120 0 0 chr15 42857170 42857471 -58523050 - AluSg SINE Alu -9 301 1 580 294 87 39 chr15 42857471 42857632 -58522889 - MIR SINE MIR -74 188 11 215 175 12 50 chr15 42857709 42857789 -58522732 + CT-rich Low_complexity Low_complexity 1 77 0 229 200 0 43 chr15 42857813 42857883 -58522638 + (TA)n Simple_repeat Simple_repeat 1 67 0 255 227 9 18 chr15 42858427 42858537 -58521984 + CT-rich Low_complexity Low_complexity 4 112 0 21 36 0 0 chr15 42858579 42858607 -58521914 + AT_rich Low_complexity Low_complexity 1 28 0 2156 50 39 4 chr15 42859872 42860153 -58520368 - AluY SINE Alu -20 291 1 240 167 146 0 chr15 42860566 42860614 -58519907 - MLT1F1 LTR MaLR -200 367 313 334 226 30 24 chr15 42860711 42860870 -58519651 - MLT1F1 LTR MaLR -408 159 1 806 252 66 44 chr15 42861165 42861622 -58518899 + LTR56 LTR ERV1 9 437 0 353 244 47 79 chr15 42861790 42861917 -58518604 + MIR SINE MIR 21 143 -65 351 0 0 0 chr15 42862658 42862697 -58517824 + (T)n Simple_repeat Simple_repeat 1 39 0 408 342 26 35 chr15 42863398 42863626 -58516895 + Charlie2 DNA MER1_type 1 226 -2556 1221 220 70 108 chr15 42863758 42864593 -58515928 + Charlie2 DNA MER1_type 1975 2777 -85 460 354 34 5 chr15 42865586 42865792 -58514729 - LTR16A LTR ERVL -120 330 119 378 272 26 77 chr15 42865948 42866143 -58514378 - L2 LINE L2 -22 3291 3107 194 128 26 0 chr15 42867290 42867329 -58513192 + GA-rich Low_complexity Low_complexity 2 41 0 1875 160 3 6 chr15 42867797 42868109 -58512412 - AluY SINE Alu 0 311 1 3315 141 21 9 chr15 42868247 42868807 -58511714 - L1PB4 LINE L1 -3 6153 5587 780 286 107 72 chr15 42869152 42869191 -58511330 + L1ME3A LINE L1 3276 3312 -2834 2565 88 95 5 chr15 42869191 42869602 -58510919 + LTR7 LTR ERV1 1 448 -2 780 286 107 72 chr15 42869602 42869960 -58510561 + L1ME3A LINE L1 3312 3656 -2490 3060 136 35 35 chr15 42869960 42870555 -58509966 + LTR49 LTR ERV1 1 595 0 780 286 107 72 chr15 42870555 42871050 -58509471 + L1ME3A LINE L1 3656 4218 -1928 3923 95 0 28 chr15 42871050 42871616 -58508905 + MER41A LTR ERV1 5 554 0 780 286 107 72 chr15 42871616 42871824 -58508697 + L1ME3A LINE L1 4218 4417 -1729 643 259 175 14 chr15 42871819 42872105 -58508416 + L1ME3A LINE L1 5553 5884 -286 * 3735 150 65 12 chr15 42872107 42872162 -58508359 + MER50 LTR ERV1 1 52 -682 234 105 0 0 chr15 42872162 42872200 -58508321 + (CA)n Simple_repeat Simple_repeat 2 39 0 3735 150 65 12 chr15 42872200 42872819 -58507702 + MER50 LTR ERV1 52 711 -23 488 231 70 13 chr15 42872878 42873034 -58507487 + L1ME3A LINE L1 6001 6165 -5 380 253 100 20 chr15 42873154 42873304 -58507217 + L1ME3A LINE L1 4602 4763 -1383 1247 199 4 0 chr15 42873322 42873548 -58506973 - AluJb SINE Alu -16 296 70 183 100 0 0 chr15 42873576 42873606 -58506915 + (AATAG)n Simple_repeat Simple_repeat 1 30 0 1565 277 74 29 chr15 42873697 42874634 -58505887 + L1ME3A LINE L1 4973 5948 -222 237 65 0 0 chr15 42876119 42876150 -58504371 + (T)n Simple_repeat Simple_repeat 1 31 0 649 215 98 29 chr15 42876926 42877172 -58503349 + L1MB7 LINE L1 4301 4563 -1583 907 242 85 30 chr15 42877172 42877608 -58502913 - MLT1D LTR MaLR 0 467 12 3211 204 64 15 chr15 42877619 42878996 -58501525 + L1MB7 LINE L1 4563 6000 -184 349 221 189 0 chr15 42878997 42879092 -58501429 - MLT1D LTR MaLR -76 429 317 611 153 5 54 chr15 42879095 42879232 -58501289 + L1MB7 LINE L1 6014 6146 -32 1069 257 89 24 chr15 42879566 42879730 -58500791 + MLT1A2 LTR MaLR 4 156 -218 432 0 0 0 chr15 42879730 42879778 -58500743 + (TG)n Simple_repeat Simple_repeat 2 49 0 1069 257 89 24 chr15 42879778 42879951 -58500570 + MLT1A2 LTR MaLR 156 363 -11 461 298 37 52 chr15 42880883 42881091 -58499430 + MIR SINE MIR 40 243 -19 198 270 27 32 chr15 42881784 42881918 -58498603 - MER5A DNA MER1_type -6 183 1 22 35 0 0 chr15 42883005 42883034 -58497487 + AT_rich Low_complexity Low_complexity 1 29 0 404 322 7 0 chr15 42883146 42883295 -58497226 + CT-rich Low_complexity Low_complexity 4 153 0 203 304 54 0 chr15 42883807 42883863 -58496658 + MIR3 SINE MIR 140 198 -10 1482 214 54 5 chr15 42884031 42884400 -58496121 - MER110A LTR ERV1 -2 466 80 236 303 26 0 chr15 42886680 42886756 -58493765 - MIR3 SINE MIR -6 202 125 261 256 23 124 chr15 42887172 42887301 -58493220 + MER5A DNA MER1_type 73 188 -1 2384 246 70 30 chr15 42887882 42888725 -58491796 - L1ME1 LINE L1 -5 6161 5285 21 0 0 0 chr15 42889555 42889576 -58490945 + AT_rich Low_complexity Low_complexity 1 21 0 305 254 146 58 chr15 42889614 42889819 -58490702 + L1ME4a LINE L1 5803 6025 -96 1906 193 39 28 chr15 42889832 42890266 -58490255 - L1MD1 LINE L1 0 6242 5812 21 36 0 0 chr15 42890414 42890442 -58490079 + AT_rich Low_complexity Low_complexity 1 28 0 2077 159 69 15 chr15 42892545 42892953 -58487568 + MSTB1 LTR MaLR 3 432 0 344 232 32 21 chr15 42893014 42893109 -58487412 - MLT1L LTR MaLR -12 603 508 2056 103 24 14 chr15 42893559 42893850 -58486671 + AluY SINE Alu 1 294 -17 2160 165 44 0 chr15 42894529 42894941 -58485580 + L1MD1 LINE L1 5367 5796 -446 1217 180 54 7 chr15 42894942 42895235 -58485286 + MLT1A1 LTR MaLR 1 365 0 2009 184 27 18 chr15 42895235 42895675 -58484846 + L1MD1 LINE L1 5793 6236 -6 21 0 0 0 chr15 42896339 42896360 -58484161 + AT_rich Low_complexity Low_complexity 1 21 0 625 280 27 31 chr15 42896369 42896626 -58483895 - L1ME3A LINE L1 -11 6159 5904 198 374 50 31 chr15 42897078 42897300 -58483221 + L2 LINE L2 2836 3061 -211 227 311 33 74 chr15 42897921 42898043 -58482478 + MIR SINE MIR 118 234 -28 367 321 50 7 chr15 42898684 42898824 -58481697 - L2 LINE L2 0 3313 3168 441 201 141 53 chr15 42899112 42899251 -58481270 - MLT1E1 LTR MaLR 0 565 330 485 213 57 41 chr15 42899310 42899500 -58481021 - MLT1E1 LTR MaLR -396 258 11 368 337 10 0 chr15 42899605 42899706 -58480815 + MIR SINE MIR 13 114 -148 2323 80 10 0 chr15 42899846 42900147 -58480374 - AluY SINE Alu -7 304 1 25 0 0 0 chr15 42901147 42901172 -58479349 + AT_rich Low_complexity Low_complexity 1 25 0 290 296 102 51 chr15 42901959 42902155 -58478366 + MIR3 SINE MIR 2 207 -1 297 343 119 34 chr15 42902318 42902645 -58477876 + L2 LINE L2 2929 3283 -30 243 0 0 0 chr15 42902663 42902690 -58477831 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 1366 151 81 13 chr15 42902987 42903266 -58477255 - MLT1D LTR MaLR -1 504 221 280 158 24 134 chr15 42903278 42903360 -58477161 - MLT1D LTR MaLR -430 75 3 247 331 166 0 chr15 42903531 42903694 -58476827 - MIR SINE MIR -60 202 13 615 288 56 4 chr15 42904326 42904576 -58475945 - LTR37B LTR ERV1 0 468 206 452 138 277 46 chr15 42904640 42904770 -58475751 - MER20 DNA MER1_type -4 215 56 423 212 102 66 chr15 42904772 42904909 -58475612 + FLAM_A SINE Alu 1 142 0 949 168 37 94 chr15 42905343 42905587 -58474934 - L1PA16 LINE L1 -9 6157 5928 * 1278 129 41 153 chr15 42905584 42905925 -58474596 + L1P LINE L1 3644 3946 -2200 927 266 79 13 chr15 42906157 42906473 -58474048 - MER46C DNA MER2_type 0 338 2 386 291 141 10 chr15 42906490 42906696 -58473825 - MIR SINE MIR 0 262 30 563 224 43 6 chr15 42907455 42907616 -58472905 - L1M4 LINE L1 -3832 2314 2148 * 634 175 138 78 chr15 42907613 42907830 -58472691 - L1MB7 LINE L1 0 6682 6453 2228 221 68 10 chr15 42907833 42908923 -58471598 - L1MB7 LINE L1 -329 6353 5203 572 242 26 9 chr15 42908923 42909158 -58471363 - 7SK RNA RNA 0 193 1 1126 219 33 25 chr15 42909158 42909523 -58470998 - L1MB7 LINE L1 -1426 5218 4851 2014 277 85 24 chr15 42909536 42911411 -58469110 - L1MB7 LINE L1 -3650 2994 886 * 4387 215 26 43 chr15 42911405 42912980 -58467541 - L1MD1 LINE L1 -68 6672 5131 1173 266 66 23 chr15 42913021 42913583 -58466938 - L1MD1 LINE L1 -5057 1577 893 328 206 68 14 chr15 42913661 42913734 -58466787 - L1MD1 LINE L1 -5671 871 795 318 364 36 27 chr15 42914103 42914323 -58466198 - L1MD1 LINE L1 -6304 238 17 2070 233 43 9 chr15 42914418 42914951 -58465570 - L1MB7 LINE L1 -16 6168 5618 478 328 20 10 chr15 42914952 42915156 -58465365 - L1MEc LINE L1 -5789 607 402 1493 223 17 3 chr15 42915190 42915536 -58464985 + MER6 DNA MER2_type 505 855 -10 3590 266 57 26 chr15 42915547 42918689 -58461832 - L1 LINE L1 -3693 2657 4 410 268 73 65 chr15 42920464 42920710 -58459811 - HERVL68 LTR ERVL -329 2708 2461 259 296 115 12 chr15 42921433 42921676 -58458845 + L1ME4a LINE L1 5668 5935 -186 34 65 0 0 chr15 42921795 42921857 -58458664 + AT_rich Low_complexity Low_complexity 1 62 0 2093 136 0 0 chr15 42922558 42922860 -58457661 - AluSq SINE Alu -11 302 1 274 238 16 0 chr15 42923941 42924004 -58456517 - MLT1K LTR MaLR -14 574 511 204 340 123 0 chr15 42924491 42924597 -58455924 - MIR3 SINE MIR -76 132 14 684 296 57 31 chr15 42924829 42925180 -58455341 + LTR16B LTR ERVL 105 464 0 668 324 84 17 chr15 42927740 42928277 -58452244 + HAL1b LINE L1 271 843 -505 5907 102 11 16 chr15 42928545 42929564 -58450957 + L1P3 LINE L1 923 1923 -4538 2553 61 302 16 chr15 42929733 42930173 -58450348 - L1P LINE L1 -5088 1058 493 * 7528 32 0 0 chr15 42930158 42931075 -58449446 + L1P LINE L1 1539 2455 -3691 10663 111 13 1 chr15 42931219 42932871 -58447650 + L1P3 LINE L1 1913 3584 -2877 782 74 0 0 chr15 42932868 42932976 -58447545 - L1P LINE L1 -4780 1366 1259 * 14623 96 4 4 chr15 42933076 42935239 -58445282 + L1PA2 LINE L1 2548 4711 -1435 7311 23 1 0 chr15 42935344 42936493 -58444028 + L1PA2 LINE L1 4997 6152 -3 2705 98 2 2 chr15 42936508 42936905 -58443616 + L1P3 LINE L1 3567 3963 -2498 4453 64 24 0 chr15 42936905 42937476 -58443045 + L1PA7 LINE L1 5556 6148 -6 371 305 106 16 chr15 42937490 42937932 -58442589 - L1ME4a LINE L1 -294 5827 5332 1531 233 65 27 chr15 42938159 42938605 -58441916 - L1MCa LINE L1 -5959 467 5 1718 185 82 23 chr15 42939625 42939663 -58440858 - MLT2B1 LTR ERVL -5 515 481 309 51 0 0 chr15 42939663 42939702 -58440819 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1718 185 82 23 chr15 42939702 42940102 -58440419 - MLT2B1 LTR ERVL -39 481 1 283 335 28 51 chr15 42940383 42940559 -58439962 - L2 LINE L2 -210 3062 2891 238 284 15 0 chr15 42940630 42940697 -58439824 - L2 LINE L2 -1020 2294 2227 481 248 43 98 chr15 42940794 42941028 -58439493 + MER102a DNA MER1_type 78 298 -32 23 33 0 0 chr15 42941360 42941390 -58439131 + AT_rich Low_complexity Low_complexity 1 30 0 772 201 17 11 chr15 42941629 42941803 -58438718 - L1MC3 LINE L1 -8 7777 7603 21 36 0 0 chr15 42941803 42941831 -58438690 + AT_rich Low_complexity Low_complexity 1 28 0 1834 114 70 84 chr15 42941954 42942323 -58438198 - THE1B LTR MaLR 0 364 1 9334 118 14 18 chr15 42942323 42943934 -58436587 - THE1B-int LTR MaLR 0 1651 87 244 155 113 0 chr15 42944390 42944461 -58436060 - L1MCc LINE L1 -3900 3043 2965 340 221 158 11 chr15 42944482 42944577 -58435944 - L1MCc LINE L1 -4022 2919 2811 435 19 0 0 chr15 42946436 42946488 -58434033 + (CA)n Simple_repeat Simple_repeat 1 52 0 186 43 0 0 chr15 42946487 42946510 -58434011 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 203 241 155 0 chr15 42947175 42947233 -58433288 + MIR SINE MIR 75 141 -121 315 312 65 40 chr15 42947453 42947652 -58432869 - MIR SINE MIR -9 253 50 1845 90 0 12 chr15 42949361 42949616 -58430905 - PABL_B LTR ERV1 -2 665 414 580 239 79 74 chr15 42949741 42950327 -58430194 - L1MCc LINE L1 -5048 1893 1317 328 384 67 27 chr15 42950863 42951194 -58429327 - L1MCc LINE L1 -6191 750 407 275 245 43 0 chr15 42951827 42951921 -58428600 + (TA)n Simple_repeat Simple_repeat 2 99 0 2012 107 0 28 chr15 42951998 42952314 -58428207 - AluSg SINE Alu 0 308 1 516 250 66 31 chr15 42953045 42953241 -58427280 + MLT1C LTR MaLR 112 314 -153 5729 216 72 23 chr15 42953356 42956836 -58423685 + L1 LINE L1 312 3971 -2357 5230 188 41 15 chr15 42957717 42958214 -58422307 - L1MA4 LINE L1 -6 6294 5811 2491 77 0 0 chr15 42958214 42958525 -58421996 - AluY SINE Alu 0 311 1 5230 188 41 15 chr15 42958525 42960297 -58420224 - L1MA4 LINE L1 -489 5811 3972 1147 250 52 43 chr15 42960515 42960597 -58419924 + L1MDa LINE L1 1565 1645 -4895 2297 161 14 48 chr15 42960597 42961038 -58419483 + MSTB LTR MaLR 1 426 0 1147 250 52 43 chr15 42961038 42961515 -58419006 + L1MDa LINE L1 1645 2129 -4411 358 89 0 36 chr15 42961549 42961605 -58418916 + MADE1 DNA Mariner 3 56 -24 388 235 55 84 chr15 42961627 42961865 -58418656 + L1MDa LINE L1 2334 2564 -3976 327 282 40 101 chr15 42961865 42962241 -58418280 - L1MCc LINE L1 -6047 376 24 26 30 0 0 chr15 42962314 42962347 -58418174 + AT_rich Low_complexity Low_complexity 1 33 0 1416 171 146 36 chr15 42962489 42962845 -58417676 + LTR52 LTR ERVL 1 395 -26 522 338 112 33 chr15 42963120 42963603 -58416918 - LTR33 LTR ERVL 0 521 1 26 0 0 0 chr15 42964100 42964126 -58416395 + AT_rich Low_complexity Low_complexity 1 26 0 719 179 7 0 chr15 42965254 42965394 -58415127 - L1MA4 LINE L1 -2122 4024 3884 1985 226 46 20 chr15 42965521 42966060 -58414461 - L1P LINE L1 -2130 4016 3464 4251 196 20 14 chr15 42966075 42967028 -58413493 + L1 LINE L1 4207 5165 -1163 3878 170 29 22 chr15 42967139 42968180 -58412341 + L1PA16 LINE L1 4975 6017 -149 329 339 0 39 chr15 42968267 42968394 -58412127 + MER5A DNA MER1_type 44 165 -24 26 30 0 0 chr15 42968599 42968632 -58411889 + AT_rich Low_complexity Low_complexity 1 33 0 952 220 6 0 chr15 42968768 42968945 -58411576 - MER45A DNA AcHobo 0 178 1 34 19 0 19 chr15 42969495 42969528 -58410993 + AT_rich Low_complexity Low_complexity 1 34 -17 2062 113 0 3 chr15 42969528 42969812 -58410709 - AluSg SINE Alu -27 283 1 34 19 0 19 chr15 42969812 42969830 -58410691 + AT_rich Low_complexity Low_complexity 34 51 0 236 221 156 0 chr15 42970512 42970589 -58409932 + MIR SINE MIR 122 210 -52 545 246 129 12 chr15 42970730 42971072 -58409449 - L1MDb LINE L1 -2718 4239 3858 449 259 101 50 chr15 42971067 42971763 -58408758 - L1MDb LINE L1 -4916 2043 1206 * 375 60 0 0 chr15 42972767 42972817 -58407704 + (TG)n Simple_repeat Simple_repeat 2 51 0 369 109 0 0 chr15 42973748 42973803 -58406718 + (CA)n Simple_repeat Simple_repeat 1 55 0 342 315 11 0 chr15 42973945 42974037 -58406484 + MIR SINE MIR 30 122 -140 333 296 127 26 chr15 42974157 42974346 -58406175 + LTR16C LTR ERVL 277 484 -7 857 320 42 46 chr15 42974348 42975022 -58405499 - ERVL LTR ERVL -3211 2482 1761 216 0 0 0 chr15 42975368 42975392 -58405129 + (T)n Simple_repeat Simple_repeat 1 24 0 2165 101 7 10 chr15 42975822 42976130 -58404391 + AluY SINE Alu 3 309 -2 826 198 31 47 chr15 42977321 42977513 -58403008 - MER5A DNA MER1_type 0 189 1 22 0 0 0 chr15 42979362 42979384 -58401137 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr15 42980754 42980791 -58399730 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr15 42981502 42981532 -58398989 + AT_rich Low_complexity Low_complexity 1 30 0 335 246 52 22 chr15 42981640 42981774 -58398747 + L1MEd LINE L1 963 1100 -5019 400 304 106 14 chr15 42981812 42982029 -58398492 + L1MEd LINE L1 1180 1416 -4894 343 299 84 37 chr15 42982241 42982455 -58398066 - L1ME2 LINE L1 -224 5940 5717 3819 105 19 8 chr15 42982485 42983075 -58397446 + L1MA1 LINE L1 5707 6302 0 23 92 0 0 chr15 42983075 42983140 -58397381 + AT_rich Low_complexity Low_complexity 1 65 0 316 336 129 13 chr15 42983155 42983536 -58396985 - L1ME2 LINE L1 -1542 4604 4180 245 318 40 11 chr15 42983667 42983843 -58396678 - L1ME2 LINE L1 -2153 3993 3813 595 292 142 59 chr15 42983860 42985037 -58395484 - L1ME2 LINE L1 -2381 3765 2430 267 289 106 19 chr15 42985770 42985874 -58394647 + L2 LINE L2 3197 3309 -4 607 70 0 20 chr15 42986681 42986781 -58393740 + (CATA)n Simple_repeat Simple_repeat 2 99 0 667 203 0 0 chr15 42987831 42987949 -58392572 + FLAM_C SINE Alu 1 118 -15 22 56 0 0 chr15 42987949 42987985 -58392536 + AT_rich Low_complexity Low_complexity 1 36 0 201 139 0 0 chr15 42989238 42989281 -58391240 + (GA)n Simple_repeat Simple_repeat 2 44 0 13102 75 15 4 chr15 42990921 42993161 -58387360 + L1P1 LINE L1 3519 5782 -373 3630 136 2 10 chr15 42993391 42993987 -58386534 + L1PA3 LINE L1 5562 6152 -3 1717 273 95 35 chr15 42993987 42996053 -58384468 + L1MEc LINE L1 1055 3210 -3005 7158 212 63 7 chr15 42996232 42997768 -58382753 - L1M2a LINE L1 -5530 1638 16 586 219 110 0 chr15 42998137 42998292 -58382229 - LTR16C LTR ERVL 0 491 320 211 191 0 0 chr15 42998657 42998699 -58381822 + CT-rich Low_complexity Low_complexity 1 42 0 243 275 12 123 chr15 42998699 42998870 -58381651 - MIR SINE MIR -2 260 109 21 0 0 0 chr15 42998989 42999010 -58381511 + AT_rich Low_complexity Low_complexity 1 21 0 241 303 66 66 chr15 42999083 42999235 -58381286 + MIR SINE MIR 17 168 -94 185 292 21 0 chr15 43000930 43000978 -58379543 + L2 LINE L2 3218 3266 -6 22 0 0 0 chr15 43001094 43001116 -58379405 + AT_rich Low_complexity Low_complexity 1 22 0 33 73 0 0 chr15 43001551 43001619 -58378902 + AT_rich Low_complexity Low_complexity 1 68 0 22 0 0 0 chr15 43002948 43002970 -58377551 + AT_rich Low_complexity Low_complexity 1 22 0 509 253 0 11 chr15 43004709 43004804 -58375717 + MER81 DNA DNA 1 94 -20 346 340 194 9 chr15 43004859 43005091 -58375430 + L2 LINE L2 2513 2787 -527 1017 297 88 17 chr15 43005177 43005870 -58374651 - L2 LINE L2 0 3313 2562 223 317 25 67 chr15 43006041 43006161 -58374360 + L2 LINE L2 3035 3149 -123 190 200 0 22 chr15 43006232 43006277 -58374244 + L2 LINE L2 3269 3312 -1 247 238 150 0 chr15 43006381 43006461 -58374060 - L2 LINE L2 0 3313 3222 214 259 0 108 chr15 43007362 43007462 -58373059 + MIR SINE MIR 2 93 -115 296 294 77 35 chr15 43008438 43008581 -58371940 + MIR SINE MIR 66 214 -48 3982 202 40 12 chr15 43010357 43011470 -58369051 - L1MA5 LINE L1 -267 7054 5880 1634 159 83 26 chr15 43011470 43011821 -58368700 - THE1C LTR MaLR 0 375 5 3982 202 40 12 chr15 43011821 43012301 -58368220 - L1MA5 LINE L1 -1441 5880 5415 2542 205 107 12 chr15 43012284 43013529 -58366992 - L1MA5 LINE L1 -4111 3057 1653 * 5671 149 36 16 chr15 43013630 43014661 -58365860 + THE1-int LTR MaLR 435 1486 -94 238 305 150 6 chr15 43015628 43015795 -58364726 + MIR SINE MIR 40 230 -32 431 168 47 28 chr15 43016570 43016677 -58363844 - MER5A DNA MER1_type -77 112 4 2471 147 16 10 chr15 43016747 43017258 -58363263 - LTR9 LTR ERV1 0 612 1 214 290 0 0 chr15 43017258 43017320 -58363201 + L2 LINE L2 3249 3310 -3 1021 323 33 11 chr15 43018633 43019082 -58361439 + LTR16B LTR ERVL 5 463 -1 268 319 123 43 chr15 43019643 43019806 -58360715 + LTR67 LTR ERVL 2 177 -380 2270 139 79 23 chr15 43022218 43022939 -58357582 - MER4E-int LTR ERV1 -1455 5303 4452 * 3605 152 57 11 chr15 43022938 43023557 -58356964 - MER4E-int LTR ERV1 -2670 4088 3442 5373 126 109 29 chr15 43023574 43025199 -58355322 - MER4E-int LTR ERV1 -4088 2670 1444 4856 138 65 13 chr15 43025210 43026280 -58354241 - MER4E-int LTR ERV1 -5578 1180 1 5037 84 29 25 chr15 43026285 43027043 -58353478 - MER4E LTR ERV1 -5 761 1 1773 200 73 40 chr15 43027099 43027469 -58353052 - MER67D LTR ERV1 0 514 157 396 40 0 0 chr15 43027469 43027519 -58353002 + (TGAA)n Simple_repeat Simple_repeat 2 51 0 890 101 0 0 chr15 43027525 43027654 -58352867 - L1PA13 LINE L1 -7 6156 6028 1773 200 73 40 chr15 43027654 43027772 -58352749 - MER67D LTR ERV1 -361 153 3 5722 130 157 6 chr15 43029645 43030698 -58349823 - MER11B LTR ERVK -24 1212 1 1899 182 88 16 chr15 43030698 43031132 -58349389 + MER4B-int LTR ERV1 6188 6652 -106 252 0 0 0 chr15 43031725 43031753 -58348768 + (T)n Simple_repeat Simple_repeat 1 28 0 5255 85 14 13 chr15 43032036 43032801 -58347720 + MER4E LTR ERV1 1 766 0 469 274 192 0 chr15 43034871 43035017 -58345504 + MER5A DNA MER1_type 15 188 -1 682 37 0 0 chr15 43035189 43035270 -58345251 + PABL_B LTR ERV1 1 81 -586 1533 146 119 26 chr15 43035748 43036091 -58344430 + THE1C LTR MaLR 1 375 0 1082 188 22 5 chr15 43036096 43036320 -58344201 + THE1C-int LTR MaLR 6 233 -1347 418 244 94 33 chr15 43036322 43036502 -58344019 + THE1B LTR MaLR 161 351 -13 330 298 11 11 chr15 43037177 43037271 -58343250 - MER5A DNA MER1_type -95 94 1 21 89 0 0 chr15 43037787 43037843 -58342678 + AT_rich Low_complexity Low_complexity 1 56 0 26 0 0 0 chr15 43038774 43038800 -58341721 + AT_rich Low_complexity Low_complexity 1 26 0 235 274 179 11 chr15 43038813 43038908 -58341613 - MIR SINE MIR 0 262 152 * 329 287 90 45 chr15 43038889 43039112 -58341409 - MIR SINE MIR -28 234 2 252 325 24 8 chr15 43039119 43039242 -58341279 + Charlie8 DNA MER1_type 109 233 -2184 233 347 48 16 chr15 43039582 43039706 -58340815 + MIR SINE MIR 2 129 -133 22 0 0 0 chr15 43041041 43041063 -58339458 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr15 43041173 43041218 -58339303 + AT_rich Low_complexity Low_complexity 1 45 0 327 216 97 30 chr15 43042018 43042152 -58338369 - MLT1H1 LTR MaLR -60 530 388 469 264 78 56 chr15 43042154 43042385 -58338136 - MLT1H1 LTR MaLR -313 242 7 562 309 53 0 chr15 43042482 43042670 -58337851 - LTR16A LTR ERVL 0 450 253 373 209 47 0 chr15 43042789 43042875 -58337646 + THE1B LTR MaLR 304 393 -3 * 579 184 9 26 chr15 43042875 43042985 -58337536 - MLT1E2 LTR MaLR -513 113 6 491 296 128 6 chr15 43043046 43043225 -58337296 + L2 LINE L2 3113 3313 0 544 209 22 22 chr15 43043430 43043564 -58336957 - AluJo SINE Alu -178 134 1 25 0 0 0 chr15 43044380 43044405 -58336116 + AT_rich Low_complexity Low_complexity 1 25 0 632 257 32 46 chr15 43044568 43044848 -58335673 + L1M4 LINE L1 4822 5097 -1049 21 0 0 0 chr15 43045272 43045293 -58335228 + AT_rich Low_complexity Low_complexity 1 21 0 317 24 24 0 chr15 43045771 43045813 -58334708 + (CA)n Simple_repeat Simple_repeat 1 43 0 311 246 34 42 chr15 43045835 43045953 -58334568 + L1M4 LINE L1 1591 1707 -4835 701 220 73 35 chr15 43046002 43046234 -58334287 + L1M4 LINE L1 4288 4528 -2116 577 257 73 5 chr15 43046273 43046479 -58334042 + L1ME1 LINE L1 3608 3827 -2319 * 2705 251 72 18 chr15 43046471 43048361 -58332160 + L1ME1 LINE L1 4067 6151 -15 221 159 45 0 chr15 43048372 43048416 -58332105 + A-rich Low_complexity Low_complexity 6 51 0 259 246 0 0 chr15 43048808 43048865 -58331656 + MER103 DNA DNA 42 98 -68 420 329 13 13 chr15 43048977 43049132 -58331389 - MLT1J2 LTR MaLR -291 159 5 264 250 31 52 chr15 43049502 43049598 -58330923 - MIR SINE MIR -56 206 113 193 402 12 30 chr15 43050088 43050257 -58330264 - L2 LINE L2 -290 2982 2817 4767 247 58 39 chr15 43050741 43052150 -58328371 + L1M4 LINE L1 15 1395 -5251 2071 121 13 0 chr15 43052150 43052464 -58328057 + L1PA10 LINE L1 5848 6165 -3 4767 247 58 39 chr15 43052464 43053022 -58327499 + L1M4 LINE L1 1395 2031 -4615 7674 92 5 14 chr15 43053022 43054103 -58326418 - MER11C LTR ERVK 0 1071 1 4767 247 58 39 chr15 43054103 43054170 -58326351 + L1M4 LINE L1 2031 2095 -4551 1489 86 34 10 chr15 43054269 43054478 -58326043 + LTR66 LTR ERVL 1 214 -396 227 301 9 0 chr15 43054535 43054648 -58325873 + (CATATA)n Simple_repeat Simple_repeat 2 115 0 237 286 11 22 chr15 43054648 43054739 -58325782 - L1MC4 LINE L1 -1339 6703 6614 * 242 279 47 0 chr15 43054683 43054769 -58325752 + L1MC4 LINE L1 6614 6703 -1339 287 217 43 14 chr15 43054817 43054886 -58325635 + MER7A DNA MER2_type 3 73 -275 195 184 0 0 chr15 43054886 43054924 -58325597 + (TG)n Simple_repeat Simple_repeat 1 38 0 263 177 16 0 chr15 43054982 43055044 -58325477 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 2123 167 9 0 chr15 43055045 43055387 -58325134 + MER7A DNA MER2_type 3 345 -1 1900 241 64 73 chr15 43055591 43056011 -58324510 + L1M4 LINE L1 2684 3095 -3549 2261 53 3 66 chr15 43056011 43056329 -58324192 - AluY SINE Alu -13 298 1 1900 241 64 73 chr15 43056329 43056748 -58323773 + L1M4 LINE L1 3095 3516 -3128 1259 206 73 24 chr15 43056781 43057150 -58323371 - L1 LINE L1 -1547 4599 4213 1312 126 23 0 chr15 43057152 43057366 -58323155 + L1PB4 LINE L1 5931 6149 -7 6582 228 64 34 chr15 43057390 43059712 -58320809 + L1M4 LINE L1 3535 5946 -726 257 282 56 0 chr15 43059832 43059903 -58320618 + MER91C DNA MER1_type 34 108 -32 366 321 34 63 chr15 43061056 43061293 -58319228 + MIR SINE MIR 28 257 -5 623 291 65 0 chr15 43061575 43061774 -58318747 + MIR SINE MIR 10 221 -41 23 68 0 0 chr15 43061981 43062025 -58318496 + AT_rich Low_complexity Low_complexity 1 44 0 1549 227 58 142 chr15 43062211 43063217 -58317304 + L1ME1 LINE L1 4076 4996 -1150 625 254 31 36 chr15 43063224 43063463 -58317058 + L1ME1 LINE L1 5942 6163 -1 33 0 0 0 chr15 43064189 43064222 -58316299 + AT_rich Low_complexity Low_complexity 1 33 0 5496 164 20 21 chr15 43064654 43066027 -58314494 - L1P5 LINE L1 -381 5775 4398 189 0 0 0 chr15 43066027 43066048 -58314473 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 5496 164 20 21 chr15 43066048 43066295 -58314226 - L1P5 LINE L1 -1758 4398 4152 573 139 0 30 chr15 43067556 43067657 -58312864 + MER4A LTR ERV1 1 98 -566 1655 146 26 22 chr15 43067657 43067999 -58312522 + MER4A LTR ERV1 263 664 0 262 242 32 0 chr15 43068173 43068235 -58312286 + MIR SINE MIR 87 150 -112 3640 166 71 38 chr15 43068242 43069041 -58311480 - LTR1B LTR ERV1 0 826 1 408 293 54 7 chr15 43069188 43069335 -58311186 + L2 LINE L2 3160 3313 0 240 373 16 8 chr15 43069648 43069774 -58310747 - L2 LINE L2 -842 2472 2346 383 272 84 47 chr15 43069792 43070005 -58310516 - MIR SINE MIR -11 251 31 4245 197 18 6 chr15 43070530 43071437 -58309084 - L1 LINE L1 -1997 4149 3232 5627 185 21 40 chr15 43071465 43072322 -58308199 - L1MC1 LINE L1 -1 6401 5529 2254 106 0 0 chr15 43072322 43072615 -58307906 - AluSc SINE Alu -16 293 1 5627 185 21 40 chr15 43072615 43073171 -58307350 - L1MC1 LINE L1 -873 5529 5012 195 42 0 0 chr15 43073171 43073195 -58307326 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5627 185 21 40 chr15 43073195 43073485 -58307036 - L1MC1 LINE L1 -1390 5012 4718 1539 228 94 59 chr15 43073477 43073709 -58306812 - L1M4 LINE L1 -1299 4847 4624 * 1619 222 3 0 chr15 43073709 43074015 -58306506 + AluJo SINE Alu 5 311 -1 1539 228 94 59 chr15 43074015 43074476 -58306045 - L1M4 LINE L1 -1522 4624 4130 48 93 0 0 chr15 43074990 43075129 -58305392 + AT_rich Low_complexity Low_complexity 1 139 0 333 207 62 41 chr15 43075297 43075442 -58305079 - L1MC5 LINE L1 -227 7734 7587 507 234 7 26 chr15 43075633 43075787 -58304734 - L1M4 LINE L1 -3136 3010 2860 23 78 0 0 chr15 43075791 43075842 -58304679 + AT_rich Low_complexity Low_complexity 1 51 0 324 329 54 7 chr15 43075954 43076103 -58304418 - L1MC1 LINE L1 -2143 4072 3917 214 255 7 114 chr15 43076169 43076318 -58304203 - L2 LINE L2 -1235 2079 1947 2045 157 45 0 chr15 43077249 43077581 -58302940 - MER7A DNA MER2_type -1 345 1 23 54 0 0 chr15 43077855 43077892 -58302629 + AT_rich Low_complexity Low_complexity 1 37 0 443 279 7 7 chr15 43079317 43079457 -58301064 - L1MC1 LINE L1 -2216 3999 3860 * 905 272 98 88 chr15 43079449 43079663 -58300858 - L1MC1 LINE L1 -5279 1117 907 2261 97 7 3 chr15 43079663 43079973 -58300548 - AluSp SINE Alu 0 313 3 905 272 98 88 chr15 43079973 43080115 -58300406 - L1MC1 LINE L1 -5489 907 768 1864 114 7 4 chr15 43080115 43080396 -58300125 - AluSx SINE Alu -30 282 1 905 272 98 88 chr15 43080396 43081115 -58299406 - L1MC1 LINE L1 -5628 768 30 42 0 0 0 chr15 43082458 43082500 -58298021 + AT_rich Low_complexity Low_complexity 1 42 0 478 270 139 36 chr15 43082505 43082923 -58297598 + L1ME4a LINE L1 5640 6100 -21 227 221 15 15 chr15 43082943 43083011 -58297510 + L1MD3 LINE L1 7923 7990 -5 401 296 49 31 chr15 43083192 43083354 -58297167 - L2 LINE L2 -1 3312 3148 26 30 0 0 chr15 43083492 43083525 -58296996 + AT_rich Low_complexity Low_complexity 1 33 0 * 556 227 80 0 chr15 43083509 43083659 -58296862 + MIR SINE MIR 97 258 -4 683 272 6 6 chr15 43084426 43084599 -58295922 - MIR SINE MIR -10 252 80 3817 115 53 76 chr15 43084934 43085737 -58294784 - LTR1 LTR ERV1 0 785 1 275 182 18 0 chr15 43085782 43085837 -58294684 + L2 LINE L2 3256 3311 -2 319 305 50 13 chr15 43085888 43086012 -58294509 - MIR SINE MIR -65 143 31 328 259 80 85 chr15 43086185 43086409 -58294112 - MIR SINE MIR -27 235 13 285 193 96 36 chr15 43086498 43086581 -58293940 - LTR16C LTR ERVL -11 480 393 794 321 25 19 chr15 43086594 43086912 -58293609 + LTR16A LTR ERVL 47 366 -84 1453 89 27 0 chr15 43089779 43090004 -58290517 - L1MA9 LINE L1 0 6312 6082 1777 161 0 7 chr15 43090005 43090278 -58290243 + AluSx SINE Alu 1 271 -41 210 36 107 0 chr15 43090278 43090334 -58290187 + (TA)n Simple_repeat Simple_repeat 1 62 0 7400 181 19 15 chr15 43090334 43092671 -58287850 - L1MA9 LINE L1 -191 6121 3775 5939 145 0 11 chr15 43092817 43093830 -58286691 - L1P LINE L1 -3359 2787 1786 12596 125 5 6 chr15 43093831 43094156 -58286365 + L1PA8A LINE L1 3349 3673 -2458 396 0 0 0 chr15 43094156 43094200 -58286321 + (CA)n Simple_repeat Simple_repeat 2 45 0 12596 125 5 6 chr15 43094200 43096611 -58283910 + L1PA8A LINE L1 3673 6118 -13 203 162 0 0 chr15 43096749 43096786 -58283735 + T-rich Low_complexity Low_complexity 3 39 0 23 54 0 0 chr15 43097283 43097320 -58283201 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr15 43097347 43097370 -58283151 + AT_rich Low_complexity Low_complexity 1 23 0 440 323 173 19 chr15 43097575 43097888 -58282633 + L3 LINE CR1 1117 1477 -100 1363 198 189 28 chr15 43098699 43099134 -58281387 + MLT1D LTR MaLR 1 505 0 549 275 85 64 chr15 43099199 43099644 -58280877 - MLT1J LTR MaLR -21 594 38 1594 189 5 65 chr15 43099822 43100208 -58280313 - MLT1A1 LTR MaLR -2 363 1 1993 175 48 0 chr15 43100230 43100601 -58279920 - MLT1B LTR MaLR 0 390 2 302 327 97 22 chr15 43100658 43100884 -58279637 - L2 LINE L2 -451 2863 2621 1035 249 58 34 chr15 43101892 43102273 -58278248 - MLT1B LTR MaLR 0 390 1 548 291 80 25 chr15 43103802 43104039 -58276482 + MIR SINE MIR 10 259 -3 538 250 156 5 chr15 43105146 43105338 -58275183 + LTR33 LTR ERVL 54 274 -247 263 247 86 0 chr15 43105393 43105474 -58275047 + LTR33 LTR ERVL 434 521 0 1603 126 59 30 chr15 43106155 43106452 -58274069 - AluSg SINE Alu 0 307 3 644 155 14 106 chr15 43107579 43107786 -58272735 + MER53 DNA DNA 1 188 -1 844 357 59 28 chr15 43108680 43109437 -58271084 + ERVL LTR ERVL 4544 5324 -440 21 0 0 0 chr15 43109980 43110001 -58270520 + AT_rich Low_complexity Low_complexity 1 21 0 1100 289 43 102 chr15 43110003 43110836 -58269685 + L2 LINE L2 2498 3275 -38 757 227 160 14 chr15 43112835 43113117 -58267404 - L1ME3 LINE L1 -224 5938 5616 370 294 8 8 chr15 43113123 43113249 -58267272 + L1ME2 LINE L1 6026 6151 -13 524 316 37 64 chr15 43114359 43114590 -58265931 - MER102a DNA MER1_type -1111 306 96 1214 167 14 5 chr15 43114590 43114806 -58265715 - L1PA15 LINE L1 -3 6162 5945 524 316 37 64 chr15 43114806 43114900 -58265621 - MER102a DNA MER1_type -1321 96 1 2574 141 84 26 chr15 43114925 43115379 -58265142 - LTR12 LTR ERV1 -234 480 1 1412 326 101 32 chr15 43116180 43116521 -58264000 + L2 LINE L2 1322 1638 -1676 2579 17 0 7 chr15 43116521 43116814 -58263707 + AluYa5 SINE Alu 16 306 -5 1412 326 101 32 chr15 43116814 43117387 -58263134 + L2 LINE L2 1638 2299 -1015 1052 298 14 26 chr15 43117388 43117808 -58262713 + L1ME3A LINE L1 5560 5974 -196 5761 151 26 18 chr15 43117821 43119688 -58260833 + L1MA2 LINE L1 4220 6099 -205 2126 102 40 3 chr15 43119688 43120008 -58260513 + L1MA2 LINE L1 5968 6304 0 21 36 0 0 chr15 43120008 43120036 -58260485 + AT_rich Low_complexity Low_complexity 1 28 0 7297 186 33 11 chr15 43120202 43121475 -58259046 - L1P5 LINE L1 -599 5552 4230 1948 123 3 7 chr15 43121475 43121788 -58258733 - AluSq SINE Alu 0 312 1 7297 186 33 11 chr15 43121788 43122380 -58258141 - L1P5 LINE L1 -1921 4230 3652 1868 241 65 20 chr15 43122353 43123065 -58257456 - L1ME LINE L1 -686 5480 4735 * 4501 252 43 31 chr15 43123045 43123166 -58257355 - L1ME LINE L1 -1871 4773 4655 2350 97 0 0 chr15 43123166 43123474 -58257047 - AluSc SINE Alu -1 308 1 4501 252 43 31 chr15 43123474 43125108 -58255413 - L1ME LINE L1 -1989 4655 2997 * 11495 213 36 26 chr15 43125104 43127725 -58252796 - L1PA16 LINE L1 0 6869 4177 372 22 0 0 chr15 43127725 43127770 -58252751 + (TG)n Simple_repeat Simple_repeat 2 46 0 11495 213 36 26 chr15 43127770 43129242 -58251279 - L1PA16 LINE L1 -2692 4177 2721 1439 263 36 34 chr15 43129242 43130093 -58250428 - L1MEc LINE L1 -3633 3011 2200 4614 167 52 19 chr15 43130108 43130582 -58249939 - L1MA4 LINE L1 -2 6298 5841 207 0 0 0 chr15 43130582 43130605 -58249916 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 411 21 0 0 chr15 43130604 43130652 -58249869 + (TA)n Simple_repeat Simple_repeat 1 48 0 4614 167 52 19 chr15 43130605 43131139 -58249382 - L1MA4 LINE L1 -459 5841 5305 1697 265 58 65 chr15 43131134 43131260 -58249261 - L1MEc LINE L1 -4612 2034 1909 * 1271 179 151 0 chr15 43131260 43131511 -58249010 - AluJb SINE Alu -13 289 1 1697 265 58 65 chr15 43131511 43132191 -58248330 - L1MEc LINE L1 -4737 1909 1232 2091 141 118 8 chr15 43132191 43132573 -58247948 - MSTA LTR MaLR 0 428 5 1697 265 58 65 chr15 43132573 43132710 -58247811 - L1MEc LINE L1 -5414 1232 1096 2890 162 27 73 chr15 43132710 43133338 -58247183 - LTR9 LTR ERV1 0 612 14 3030 241 35 48 chr15 43133345 43134247 -58246274 - L1MEc LINE L1 -5650 892 2 1832 195 9 12 chr15 43134533 43134876 -58245645 - MER7A DNA MER2_type 0 346 7 555 217 0 91 chr15 43136519 43136662 -58243859 + FLAM_A SINE Alu 4 133 0 22 56 0 0 chr15 43136693 43136729 -58243792 + AT_rich Low_complexity Low_complexity 1 36 0 261 329 46 7 chr15 43136776 43136928 -58243593 - L1MC/D LINE L1 -1927 5950 5793 240 338 0 0 chr15 43137070 43137138 -58243383 - L1MC/D LINE L1 -2263 5614 5547 734 310 120 57 chr15 43137166 43137872 -58242649 - L1MC/D LINE L1 -1304 4911 4161 206 179 0 60 chr15 43137872 43137939 -58242582 + (TTATA)n Simple_repeat Simple_repeat 3 65 0 24 0 0 0 chr15 43138051 43138075 -58242446 + AT_rich Low_complexity Low_complexity 1 24 0 258 267 78 17 chr15 43138075 43138191 -58242330 - L1MC/D LINE L1 -2319 3896 3774 315 307 126 47 chr15 43138198 43138452 -58242069 - L1MC/D LINE L1 -2451 3764 3491 324 237 34 42 chr15 43138473 43138591 -58241930 + L1M4 LINE L1 3523 3639 -2507 2153 57 42 7 chr15 43138703 43138986 -58241535 + AluY SINE Alu 1 293 -18 227 264 71 47 chr15 43139548 43139870 -58240651 - L1MC/D LINE L1 -5061 1335 1006 1229 214 10 75 chr15 43140132 43140427 -58240094 - MSTD LTR MaLR 0 396 121 252 0 0 0 chr15 43140462 43140490 -58240031 + (TA)n Simple_repeat Simple_repeat 2 29 0 3179 67 0 7 chr15 43140566 43140969 -58239552 - MLT2A1 LTR ERVL -44 400 1 514 125 302 0 chr15 43140970 43141066 -58239455 - MSTD LTR MaLR -271 125 1 6387 249 25 38 chr15 43141066 43142822 -58237699 - MSTD-int LTR MaLR 0 1735 2 197 33 33 0 chr15 43142872 43142902 -58237619 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2046 135 22 19 chr15 43142902 43143264 -58237257 - L1PB1 LINE L1 -7 6144 5782 298 101 0 63 chr15 43143281 43143360 -58237161 + (TATATG)n Simple_repeat Simple_repeat 3 76 0 299 143 0 0 chr15 43143360 43143416 -58237105 + L1P5 LINE L1 5782 5837 -314 284 103 0 0 chr15 43143456 43143495 -58237026 + L1P5 LINE L1 5737 5775 -376 288 0 0 0 chr15 43143499 43143531 -58236990 + (TG)n Simple_repeat Simple_repeat 2 33 0 559 312 18 24 chr15 43143810 43143980 -58236541 + LTR33 LTR ERVL 9 177 -344 288 263 53 38 chr15 43144098 43144231 -58236290 + LTR33 LTR ERVL 385 519 -2 548 68 14 0 chr15 43144382 43144456 -58236065 + MADE1 DNA Mariner 1 75 -5 265 288 153 5 chr15 43144522 43144744 -58235777 - HAL1b LINE L1 -503 845 591 329 151 79 167 chr15 43144750 43144876 -58235645 + MER53 DNA DNA 4 118 -71 205 250 0 0 chr15 43144897 43144937 -58235584 + MIR SINE MIR 220 259 -3 708 243 97 69 chr15 43145086 43145554 -58234967 + MLT1H1 LTR MaLR 1 535 -14 21 0 0 0 chr15 43145917 43145938 -58234583 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr15 43146709 43146747 -58233774 + AT_rich Low_complexity Low_complexity 1 38 0 635 313 42 0 chr15 43146945 43147252 -58233269 - L1ME3A LINE L1 -223 5947 5628 2013 190 53 18 chr15 43147281 43147782 -58232739 - MER44D DNA MER2_type 0 605 1 278 307 64 49 chr15 43147795 43148059 -58232462 - L1ME3A LINE L1 -580 5582 5315 282 294 84 32 chr15 43148065 43148549 -58231972 - L1ME3A LINE L1 -861 5285 4766 22 0 0 0 chr15 43148629 43148651 -58231870 + AT_rich Low_complexity Low_complexity 1 22 0 572 284 97 34 chr15 43148870 43149331 -58231190 + L1MEc LINE L1 1664 2095 -4626 315 85 0 0 chr15 43149331 43149378 -58231143 + (TATAA)n Simple_repeat Simple_repeat 2 48 0 572 284 97 34 chr15 43149378 43149735 -58230786 + L1MEc LINE L1 2095 2610 -4111 311 252 44 71 chr15 43149755 43149981 -58230540 + L1MEc LINE L1 2641 2860 -3680 360 231 0 0 chr15 43150095 43150173 -58230348 + L1MEc LINE L1 3034 3111 -3429 378 0 0 0 chr15 43150258 43150305 -58230216 + (TAGA)n Simple_repeat Simple_repeat 1 89 0 378 0 0 0 chr15 43150305 43150347 -58230174 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 288 0 0 0 chr15 43150388 43150420 -58230101 + (TG)n Simple_repeat Simple_repeat 2 33 0 301 222 16 0 chr15 43150461 43150524 -58229997 - AluJ/FRAM SINE Alu -9 293 230 5464 121 15 10 chr15 43150538 43151468 -58229053 - L1PA13 LINE L1 0 6163 5203 6417 177 5 47 chr15 43151473 43152161 -58228360 + L1P LINE L1 3819 4469 -1677 265 89 22 0 chr15 43152161 43152206 -58228315 + MADE1 DNA Mariner 1 46 -34 6417 177 5 47 chr15 43152206 43152832 -58227689 + L1P LINE L1 4469 5120 -1026 19447 85 27 2 chr15 43152837 43155408 -58225113 + HERVL-A2 LTR ERVL 3019 5654 0 2322 152 55 19 chr15 43155408 43155924 -58224597 + MLT2A2 LTR ERVL 1 554 0 271 111 0 0 chr15 43155924 43155969 -58224552 + L1P LINE L1 5116 5160 -986 * 1015 290 93 55 chr15 43155961 43157228 -58223293 + L1MEc LINE L1 3254 4569 -1971 22 70 0 0 chr15 43157529 43157572 -58222949 + AT_rich Low_complexity Low_complexity 1 43 0 25440 141 13 22 chr15 43157608 43162815 -58217706 - L1PA15 LINE L1 0 6480 1247 189 74 0 0 chr15 43162815 43162842 -58217679 + (TTG)n Simple_repeat Simple_repeat 1 27 0 25440 141 13 22 chr15 43162842 43164078 -58216443 - L1PA15 LINE L1 -5233 1247 1 29 28 0 0 chr15 43164712 43164748 -58215773 + AT_rich Low_complexity Low_complexity 1 36 0 7918 15 0 1 chr15 43164781 43166015 -58214506 - L1HS LINE L1 0 6155 4923 3465 27 14 0 chr15 43166000 43166414 -58214107 + L1P LINE L1 4552 4971 -1175 * 1986 129 7 24 chr15 43166475 43166770 -58213751 - AluSx SINE Alu -20 292 3 814 198 20 10 chr15 43167182 43167379 -58213142 - L1MD1 LINE L1 0 6242 6044 290 205 0 26 chr15 43167405 43167483 -58213038 - L1MD1 LINE L1 -123 6119 6044 * 295 205 0 26 chr15 43167457 43167535 -58212986 - L1MD1 LINE L1 -123 6119 6044 281 205 0 26 chr15 43167561 43167639 -58212882 - L1MD1 LINE L1 -123 6119 6044 * 2203 224 25 22 chr15 43167613 43167697 -58212824 - L1MD1 LINE L1 -123 6119 6037 1613 154 37 7 chr15 43167697 43167969 -58212552 - AluJo SINE Alu -19 293 14 2203 224 25 22 chr15 43167969 43168409 -58212112 - L1MD1 LINE L1 -205 6037 5590 7458 35 0 0 chr15 43168409 43169796 -58210725 - L1PA4 LINE L1 -5 6150 4764 2203 224 25 22 chr15 43169796 43169824 -58210697 - L1MD1 LINE L1 -652 5590 5564 902 257 45 7 chr15 43169809 43170097 -58210424 - L1MD1 LINE L1 -2300 3846 3548 * 822 250 43 31 chr15 43170129 43170518 -58210003 - PABL_B LTR ERV1 -1 666 263 655 92 0 146 chr15 43170529 43170659 -58209862 - LTR19C LTR ERV1 -354 425 315 257 235 0 0 chr15 43170730 43170781 -58209740 - PABL_B LTR ERV1 -616 51 1 400 246 66 70 chr15 43170782 43171237 -58209284 - L1MD1 LINE L1 -2617 3529 3077 * 6906 196 81 5 chr15 43171205 43172647 -58207874 - L1 LINE L1 -997 5149 3201 7703 98 8 4 chr15 43172647 43174563 -58205958 - L1PA8 LINE L1 0 6172 4237 6906 196 81 5 chr15 43174563 43175164 -58205357 - L1 LINE L1 -2945 3201 2647 10613 172 12 5 chr15 43175178 43176918 -58203603 - L1 LINE L1 -5573 1992 241 24 32 0 0 chr15 43177286 43177317 -58203204 + AT_rich Low_complexity Low_complexity 1 31 0 1057 202 15 4 chr15 43177337 43177609 -58202912 - L1P LINE L1 -762 5384 5110 * 4053 127 19 0 chr15 43177607 43178229 -58202292 + L1PB1 LINE L1 5467 6100 -51 253 281 98 0 chr15 43178878 43178960 -58201561 - MIR SINE MIR -110 152 63 801 221 55 0 chr15 43179020 43179219 -58201302 + MLT2B2 LTR ERVL 1 210 -305 354 263 93 17 chr15 43179370 43179488 -58201033 + MIR SINE MIR 15 141 -121 1245 198 73 27 chr15 43179731 43180059 -58200462 - MER2 DNA MER2_type -1 343 1 1888 180 14 6 chr15 43180484 43180828 -58199693 + MER7A DNA MER2_type 2 346 0 501 62 0 0 chr15 43181156 43181221 -58199300 + (TA)n Simple_repeat Simple_repeat 1 65 0 5650 121 29 9 chr15 43181265 43182279 -58198242 - L1PB1 LINE L1 -2 6149 5118 23 0 0 0 chr15 43182562 43182585 -58197936 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr15 43182602 43182634 -58197887 + AT_rich Low_complexity Low_complexity 1 32 0 205 167 0 69 chr15 43182863 43182935 -58197586 + T-rich Low_complexity Low_complexity 6 72 0 23 54 0 0 chr15 43183168 43183205 -58197316 + AT_rich Low_complexity Low_complexity 1 37 0 332 339 36 0 chr15 43183718 43183830 -58196691 + L2 LINE L2 3142 3257 -15 225 241 109 40 chr15 43183973 43184147 -58196374 - L1M4 LINE L1 -1593 4553 4368 25 31 0 0 chr15 43184177 43184209 -58196312 + AT_rich Low_complexity Low_complexity 1 32 0 645 288 128 31 chr15 43184603 43185016 -58195505 + L1MCc LINE L1 17 469 -5954 * 1053 304 27 33 chr15 43185012 43185377 -58195144 + L1M3a LINE L1 33 395 -5560 307 342 32 26 chr15 43185473 43185628 -58194893 + L1M3a LINE L1 549 704 -5251 2569 271 49 42 chr15 43185672 43186652 -58193869 + L1M2 LINE L1 302 1274 -4760 2198 110 0 3 chr15 43186652 43186951 -58193570 + AluSq SINE Alu 2 299 -14 2569 271 49 42 chr15 43186951 43187494 -58193027 + L1M2 LINE L1 1274 1812 -4222 2305 79 0 55 chr15 43187494 43187822 -58192699 + AluY SINE Alu 1 310 -1 2569 271 49 42 chr15 43187822 43189144 -58191377 + L1M2 LINE L1 1812 2875 -3159 2021 203 25 36 chr15 43189164 43189612 -58190909 + MSTB2 LTR MaLR 15 457 0 5321 203 32 5 chr15 43189612 43190919 -58189602 + L1M2 LINE L1 2888 4229 -1805 3264 21 0 0 chr15 43190914 43191289 -58189232 - L1P2 LINE L1 -375 5779 5405 * 4055 202 42 19 chr15 43191313 43191971 -58188550 + L1M2 LINE L1 4217 4858 -1321 2188 123 0 0 chr15 43191971 43192272 -58188249 + AluSx SINE Alu 1 301 -11 4055 202 42 19 chr15 43192272 43192720 -58187801 + L1M2 LINE L1 4858 5294 -885 189 0 0 0 chr15 43192720 43192741 -58187780 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1990 135 0 0 chr15 43192742 43193054 -58187467 + AluSx SINE Alu 1 312 0 4055 202 42 19 chr15 43193054 43193345 -58187176 + L1M2 LINE L1 5293 5651 -528 858 339 28 10 chr15 43193362 43193760 -58186761 + L1PA12 LINE L1 10 414 -7167 12631 242 34 24 chr15 43194398 43194919 -58185602 + L1PA12 LINE L1 2182 2696 -4888 1940 127 0 24 chr15 43194919 43195245 -58185276 + AluSq SINE Alu 1 319 0 12631 242 34 24 chr15 43195245 43199049 -58181472 + L1PA12 LINE L1 2696 6573 -1011 201 94 0 0 chr15 43199049 43199081 -58181440 + (CAA)n Simple_repeat Simple_repeat 1 32 0 12631 242 34 24 chr15 43199081 43199208 -58181313 + L1PA12 LINE L1 6573 6697 -887 3286 188 27 15 chr15 43199216 43200384 -58180137 - L1MA9 LINE L1 -365 5947 4768 2218 175 42 5 chr15 43200370 43200804 -58179717 + L1MC1 LINE L1 5258 5707 -626 * 1807 146 52 9 chr15 43200804 43201131 -58179390 + L1MC1 LINE L1 5992 6333 0 333 284 18 18 chr15 43201138 43201247 -58179274 - MER5A DNA MER1_type -77 112 4 296 0 51 0 chr15 43201809 43201848 -58178673 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 1946 124 7 3 chr15 43201852 43202134 -58178387 - AluSx SINE Alu -29 283 1 196 118 20 20 chr15 43203474 43203525 -58176996 + (TA)n Simple_repeat Simple_repeat 2 52 0 2263 107 0 0 chr15 43204772 43205071 -58175450 - AluSx SINE Alu -13 299 1 252 367 41 30 chr15 43205630 43205799 -58174722 + MIR SINE MIR 76 246 -16 455 295 126 19 chr15 43206728 43206935 -58173586 + MIR SINE MIR 34 262 0 204 40 0 0 chr15 43206941 43206966 -58173555 + (ATG)n Simple_repeat Simple_repeat 2 26 0 640 85 54 16 chr15 43207393 43207522 -58172999 + CT-rich Low_complexity Low_complexity 3 136 0 4680 158 20 22 chr15 43208561 43208980 -58171541 - L1MA9 LINE L1 -74 6238 5820 2358 100 0 3 chr15 43208980 43209291 -58171230 - AluSg SINE Alu 0 310 1 4680 158 20 22 chr15 43209291 43209758 -58170763 - L1MA9 LINE L1 -492 5820 5354 2255 107 3 0 chr15 43210695 43210995 -58169526 + AluSp SINE Alu 4 304 -9 304 167 69 0 chr15 43210999 43211071 -58169450 + L1ME2 LINE L1 5728 5804 -358 2610 120 63 18 chr15 43211072 43211514 -58169007 + MER4B LTR ERV1 1 462 -148 2409 151 31 5 chr15 43211514 43211937 -58168584 - MER57B LTR ERV1 0 434 1 1670 77 113 12 chr15 43211937 43212184 -58168337 - MER57B-int LTR ERV1 0 7537 7266 563 200 26 0 chr15 43212186 43212301 -58168220 - LTR54B LTR ERV1 -378 120 3 2127 131 48 12 chr15 43212302 43212638 -58167883 - MER57-int LTR ERV1 -388 7149 6802 * 4063 144 41 6 chr15 43212612 43213291 -58167230 - MER57-int LTR ERV1 -3823 3714 3012 273 98 0 0 chr15 43213291 43213332 -58167189 - MER57-int LTR ERV1 -4628 2909 2869 1092 236 25 14 chr15 43213392 43213676 -58166845 + L1ME2 LINE L1 5798 6084 -80 180 0 0 0 chr15 43213717 43213737 -58166784 + (TAAAA)n Simple_repeat Simple_repeat 5 24 0 268 306 0 0 chr15 43214242 43214304 -58166217 - LTR33 LTR ERVL -153 368 307 237 103 0 0 chr15 43214736 43214775 -58165746 + MADE1 DNA Mariner 42 80 0 731 316 135 28 chr15 43215056 43215600 -58164921 - L2 LINE L2 -168 3145 2530 228 276 79 39 chr15 43215750 43215877 -58164644 + MIR SINE MIR 77 208 -54 32 0 0 0 chr15 43217151 43217183 -58163338 + AT_rich Low_complexity Low_complexity 1 32 0 2675 233 75 19 chr15 43217183 43217983 -58162538 + L1ME1 LINE L1 5316 6160 -6 247 237 0 0 chr15 43217983 43218042 -58162479 + L1ME1 LINE L1 6101 6159 -7 451 299 55 39 chr15 43218067 43218555 -58161966 + L1ME3A LINE L1 3352 3847 -2299 438 225 56 94 chr15 43218550 43218644 -58161877 + L1MC4 LINE L1 7759 7855 -187 * 2041 134 76 17 chr15 43218644 43218988 -58161533 - THE1B LTR MaLR 0 364 1 438 225 56 94 chr15 43218988 43219160 -58161361 + L1MC4 LINE L1 7855 8015 -27 873 297 92 13 chr15 43219350 43220097 -58160424 + L1ME3A LINE L1 4012 4817 -1329 1421 282 119 28 chr15 43220103 43221232 -58159289 + L1ME3A LINE L1 4931 6170 0 22 35 0 0 chr15 43222272 43222301 -58158220 + AT_rich Low_complexity Low_complexity 1 29 0 198 263 26 66 chr15 43222330 43222406 -58158115 + L2 LINE L2 511 583 -2731 338 279 76 63 chr15 43222637 43222874 -58157647 - L1 LINE L1 -3692 2454 2215 416 319 92 35 chr15 43222940 43223341 -58157180 - LTR33 LTR ERVL -67 454 31 1805 314 34 11 chr15 43224224 43224835 -58155686 - ERVL LTR ERVL -1084 4680 4056 465 324 51 12 chr15 43224889 43225485 -58155036 - ERVL LTR ERVL -2171 3593 2882 791 118 22 37 chr15 43225542 43225677 -58154844 + FLAM_C SINE Alu 1 133 0 611 312 36 25 chr15 43225714 43226142 -58154379 - LTR33 LTR ERVL -57 464 1 21 0 0 0 chr15 43228317 43228338 -58152183 + AT_rich Low_complexity Low_complexity 1 21 0 613 328 98 25 chr15 43228617 43229013 -58151508 + L3 LINE CR1 1152 1576 -1 358 300 55 82 chr15 43229102 43229322 -58151199 + MIR SINE MIR 3 216 -46 330 345 70 48 chr15 43229791 43230782 -58149739 + L1MEc LINE L1 22 1033 -5363 * 510 316 26 16 chr15 43230773 43231083 -58149438 + L1MEc LINE L1 1445 1757 -4639 * 811 136 44 2 chr15 43231057 43231213 -58149308 - L1P LINE L1 -2033 4113 3938 321 216 10 39 chr15 43231715 43231817 -58148704 + L1ME2 LINE L1 5710 5808 -356 814 236 93 23 chr15 43231833 43232091 -58148430 + L1ME2 LINE L1 5888 6163 -1 1807 238 47 60 chr15 43232334 43232968 -58147553 + MLT1E2 LTR MaLR 1 626 0 1346 158 132 35 chr15 43233098 43233440 -58147081 - THE1C LTR MaLR 0 375 1 391 335 158 5 chr15 43234998 43235201 -58145320 - MIR SINE MIR -4 258 25 1057 209 20 43 chr15 43235446 43235700 -58144821 + MER96B DNA MER1_type? 1 248 -169 21 0 0 0 chr15 43235974 43235995 -58144526 + AT_rich Low_complexity Low_complexity 1 21 0 338 399 33 0 chr15 43236642 43236855 -58143666 + HAL1b LINE L1 714 933 -415 1633 164 48 56 chr15 43237445 43237626 -58142895 + THE1C LTR MaLR 1 182 -193 1868 140 7 4 chr15 43237626 43237955 -58142566 + AluSx SINE Alu 7 336 0 1633 164 48 56 chr15 43237955 43238150 -58142371 + THE1C LTR MaLR 182 375 0 1456 158 0 4 chr15 43238237 43238477 -58142044 - Tigger5 DNA MER2_type 0 2323 2085 363 191 0 16 chr15 43238498 43238561 -58141960 - Tigger5 DNA MER2_type -2261 62 1 218 259 0 0 chr15 43238609 43238663 -58141858 + GA-rich Low_complexity Low_complexity 1 54 0 341 248 86 50 chr15 43238756 43238954 -58141567 + L1ME3A LINE L1 4132 4336 -1810 293 299 0 0 chr15 43239013 43239080 -58141441 - MER96B DNA MER1_type? -107 68 2 505 321 6 0 chr15 43239093 43239258 -58141263 + L1ME3A LINE L1 5401 5566 -596 242 259 0 0 chr15 43239263 43239317 -58141204 + L1ME3A LINE L1 5664 5717 -453 450 216 29 0 chr15 43239352 43239454 -58141067 + L1ME3A LINE L1 5797 5901 -269 1376 223 117 45 chr15 43239455 43239822 -58140699 - MLT1D LTR MaLR 0 505 95 2250 96 3 10 chr15 43239822 43240135 -58140386 - AluSx SINE Alu -1 311 1 1376 223 117 45 chr15 43240135 43240238 -58140283 - MLT1D LTR MaLR -410 95 1 241 143 179 48 chr15 43240773 43240857 -58139664 - L1ME4a LINE L1 -41 6080 5986 * 256 191 113 52 chr15 43240833 43240948 -58139573 + HAL1b LINE L1 1225 1346 -2 248 254 30 130 chr15 43241016 43241185 -58139336 - MIR SINE MIR -12 250 99 238 50 50 0 chr15 43243630 43243670 -58136851 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 211 351 52 30 chr15 43243891 43244025 -58136496 - MIR SINE MIR -45 217 81 405 198 12 0 chr15 43244071 43244152 -58136369 + MER94 DNA DNA 4 85 -49 323 298 63 24 chr15 43244320 43244525 -58135996 - L1ME4a LINE L1 -175 5946 5734 1286 211 45 23 chr15 43244761 43245069 -58135452 - MLT1A2 LTR MaLR 0 374 60 342 276 113 43 chr15 43245173 43245358 -58135163 - L1ME4a LINE L1 -2272 3874 3677 29 70 0 0 chr15 43246907 43246964 -58133557 + AT_rich Low_complexity Low_complexity 1 57 0 1127 137 168 0 chr15 43247699 43247925 -58132596 + MER21A LTR ERV1 1 264 -667 2866 134 79 28 chr15 43247930 43248459 -58132062 + MER21A LTR ERV1 376 931 0 1353 188 8 13 chr15 43249751 43249990 -58130531 + MER41D LTR ERV1 320 557 0 1971 311 172 14 chr15 43249995 43250607 -58129914 - HAL1 LINE L1 -364 2143 1629 423 0 0 0 chr15 43250607 43250654 -58129867 + (TG)n Simple_repeat Simple_repeat 2 48 0 1971 311 172 14 chr15 43250654 43251778 -58128743 - HAL1 LINE L1 -878 1629 134 2020 128 0 30 chr15 43252507 43252812 -58127709 + AluSx SINE Alu 1 296 -16 1712 132 147 24 chr15 43254277 43254611 -58125910 + THE1C LTR MaLR 1 375 0 2236 74 10 17 chr15 43255778 43256075 -58124446 - AluY SINE Alu -16 295 1 1918 133 3 20 chr15 43256341 43256642 -58123879 + AluSx SINE Alu 1 296 -16 548 250 71 35 chr15 43257168 43257486 -58123035 - L1MC4 LINE L1 -733 7228 6930 21 0 0 0 chr15 43257490 43257511 -58123010 + AT_rich Low_complexity Low_complexity 1 21 0 659 312 52 55 chr15 43257597 43257962 -58122559 + L1MB1 LINE L1 5 368 -5523 452 328 42 51 chr15 43258024 43258409 -58122112 + L1MB1 LINE L1 193 513 -5378 665 313 4 8 chr15 43258579 43258825 -58121696 + L1MB1 LINE L1 666 910 -4991 9412 208 35 23 chr15 43258840 43260920 -58119601 + L1MB1 LINE L1 2531 4671 -1321 1787 132 4 4 chr15 43260920 43261186 -58119335 + AluSx SINE Alu 39 304 -8 9412 208 35 23 chr15 43261186 43262512 -58118009 + L1MB1 LINE L1 4671 5979 -13 1030 324 77 20 chr15 43262520 43263123 -58117398 - L2 LINE L2 -90 3223 2574 1233 242 36 15 chr15 43264768 43265099 -58115422 + MLT1A1 LTR MaLR 26 363 -2 400 127 0 32 chr15 43265664 43265727 -58114794 - AluJo SINE Alu -17 295 235 360 230 0 0 chr15 43265727 43265801 -58114720 - MER52A LTR ERV1 0 1755 1682 * 3752 189 107 80 chr15 43265791 43266932 -58113589 - MER52A LTR ERV1 -559 1196 25 1131 232 4 8 chr15 43266937 43267178 -58113343 - AluJo SINE Alu -72 240 1 1514 167 54 70 chr15 43268219 43268306 -58112215 + MLT1A1 LTR MaLR 1 88 -277 2161 115 0 0 chr15 43268306 43268621 -58111900 + AluSg SINE Alu 3 317 0 1514 167 54 70 chr15 43268621 43268903 -58111618 + MLT1A1 LTR MaLR 88 365 0 25 31 0 0 chr15 43269620 43269652 -58110869 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chr15 43271148 43271181 -58109340 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr15 43272059 43272082 -58108439 + AT_rich Low_complexity Low_complexity 1 23 0 1488 199 0 27 chr15 43272364 43272660 -58107861 - AluJo SINE Alu -22 290 3 197 260 20 0 chr15 43272940 43272990 -58107531 + L2 LINE L2 3217 3267 -5 290 323 46 36 chr15 43273175 43273370 -58107151 - L2 LINE L2 0 3313 3117 1971 156 11 11 chr15 43273746 43274093 -58106428 - MER7A DNA MER2_type -1 345 1 8523 99 28 11 chr15 43275145 43275948 -58104573 - L1PA8 LINE L1 0 6172 5384 2157 116 0 7 chr15 43275948 43276251 -58104270 - AluSq SINE Alu -12 301 1 8523 99 28 11 chr15 43276251 43277542 -58102979 - L1PA8 LINE L1 -788 5384 4044 1271 197 197 0 chr15 43278667 43279052 -58101469 + Charlie1b DNA MER1_type 56 516 -7 1134 225 14 5 chr15 43279157 43279379 -58101142 - MER58A DNA MER1_type 0 224 1 435 68 0 0 chr15 43279423 43279482 -58101039 + (TG)n Simple_repeat Simple_repeat 1 59 0 292 351 32 44 chr15 43279516 43279764 -58100757 - MIR SINE MIR -6 256 12 218 261 118 98 chr15 43279836 43279989 -58100532 - MIR SINE MIR -56 206 51 677 211 42 66 chr15 43281818 43282031 -58098490 + L1ME3 LINE L1 5857 6064 -98 290 285 131 36 chr15 43282092 43282229 -58098292 - MER5A DNA MER1_type -30 159 10 21 71 0 0 chr15 43282763 43282805 -58097716 + AT_rich Low_complexity Low_complexity 1 42 0 24 53 0 0 chr15 43283030 43283068 -58097453 + AT_rich Low_complexity Low_complexity 1 38 0 6870 139 4 10 chr15 43283072 43284646 -58095875 - L1MA2 LINE L1 0 6304 4738 2141 68 0 44 chr15 43284654 43284995 -58095526 - AluY SINE Alu 0 328 1 2493 170 10 5 chr15 43285169 43285581 -58094940 + L1M4c LINE L1 19 432 -5952 4047 27 4 0 chr15 43285591 43286070 -58094451 - L1PA3 LINE L1 -1 6154 5674 699 153 7 35 chr15 43286070 43286214 -58094307 - L1M4c LINE L1 -5829 555 416 246 59 0 0 chr15 43286212 43286246 -58094275 - L1P1 LINE L1 -488 5667 5634 * 4737 191 41 26 chr15 43286300 43287397 -58093124 + L1M4c LINE L1 416 1528 -4856 476 252 0 0 chr15 43287394 43287521 -58093000 + L1P LINE L1 3367 3493 -2653 * 4376 202 19 1 chr15 43287517 43288433 -58092088 + L1 LINE L1 3414 4345 -1801 2130 126 0 0 chr15 43288445 43288738 -58091783 + AluSx SINE Alu 3 295 -17 6699 241 40 14 chr15 43288757 43290900 -58089621 - L1 LINE L1 -2016 5549 3356 320 220 0 49 chr15 43290914 43291017 -58089504 - L1 LINE L1 -4157 3409 3039 1126 186 5 9 chr15 43291024 43291245 -58089276 - Tigger5 DNA MER2_type 0 2323 2104 17300 176 50 17 chr15 43291245 43296889 -58083632 - L1M4 LINE L1 -942 6623 642 1384 139 15 0 chr15 43296889 43297090 -58083431 - AluSg SINE Alu -106 204 1 301 186 26 88 chr15 43297096 43297209 -58083312 - L1M4 LINE L1 -7457 108 3 * 956 276 31 19 chr15 43297208 43297530 -58082991 + L1MEc LINE L1 265 590 -5806 1117 292 108 29 chr15 43297553 43298405 -58082116 + L1MEc LINE L1 1133 2051 -4345 5534 75 26 51 chr15 43298444 43299332 -58081189 + SVA Other Other 1 866 -520 2556 145 13 38 chr15 43299349 43299950 -58080571 + SVA Other Other 549 1134 -252 987 206 42 21 chr15 43302963 43303250 -58077271 + L1MA5 LINE L1 6000 6292 -8 563 274 156 4 chr15 43303278 43303548 -58076973 - Charlie2 DNA MER1_type -687 2175 1865 731 267 42 59 chr15 43303554 43303861 -58076660 - Charlie2 DNA MER1_type -2480 302 1 1337 219 84 13 chr15 43304099 43304410 -58076111 + L1MCa LINE L1 7 339 -6087 280 208 271 0 chr15 43304472 43304568 -58075953 + L1 LINE L1 1238 1359 -4998 1167 215 14 24 chr15 43304702 43304995 -58075526 + L1 LINE L1 6334 6623 -942 1057 199 5 9 chr15 43304995 43305216 -58075305 + Tigger5 DNA MER2_type 2104 2323 0 320 220 0 49 chr15 43305223 43305326 -58075195 + L1M3b LINE L1 3039 3409 -4157 3554 182 21 12 chr15 43305540 43306663 -58073858 - L1MB1 LINE L1 -227 5941 4809 609 264 6 6 chr15 43306674 43306837 -58073684 - AluSg/x SINE Alu -29 283 121 6220 75 16 45 chr15 43306964 43308117 -58072404 + SVA Other Other 433 1386 0 207 0 0 0 chr15 43308142 43308165 -58072356 + (A)n Simple_repeat Simple_repeat 1 23 0 1213 262 50 14 chr15 43308222 43308775 -58071746 + L1MCa LINE L1 2250 2782 -3644 250 291 18 18 chr15 43308841 43308951 -58071570 - MER4E LTR ERV1 -39 740 631 21 0 0 0 chr15 43308996 43309017 -58071504 + AT_rich Low_complexity Low_complexity 1 21 0 186 103 0 0 chr15 43311630 43311659 -58068862 + (TG)n Simple_repeat Simple_repeat 2 30 0 575 333 52 13 chr15 43313439 43313670 -58066851 + MIR SINE MIR 23 262 0 289 219 208 0 chr15 43313704 43313800 -58066721 - L1ME1 LINE L1 -26 6140 6025 255 408 41 10 chr15 43313800 43313996 -58066525 - MIR3 SINE MIR -2 206 5 1379 242 149 48 chr15 43314676 43315286 -58065235 - Charlie2 DNA MER1_type -1 2861 2128 1988 136 60 8 chr15 43315286 43315655 -58064866 + L1MA5 LINE L1 5908 6295 -5 1379 242 149 48 chr15 43315655 43315949 -58064572 - Charlie2 DNA MER1_type -734 2128 1865 779 268 41 57 chr15 43315945 43316262 -58064259 - Charlie2 DNA MER1_type -2550 312 1 * 1337 219 84 13 chr15 43316500 43316811 -58063710 + L1MCa LINE L1 7 339 -6087 6392 253 79 14 chr15 43316873 43320117 -58060404 + L1MA7 LINE L1 979 4423 -1959 2551 194 27 11 chr15 43320127 43320685 -58059836 + L1MA7 LINE L1 4859 5425 -957 320 203 0 0 chr15 43320685 43320744 -58059777 + L1MA7 LINE L1 6086 6144 -383 426 137 0 84 chr15 43320749 43320844 -58059677 - L1M2 LINE L1 -827 5464 5378 5380 240 42 20 chr15 43320886 43322459 -58058062 + L1M4 LINE L1 3627 5234 -912 562 250 40 28 chr15 43322471 43322751 -58057770 + L1MCa LINE L1 1266 1676 -4868 5355 163 50 15 chr15 43322968 43324069 -58056452 + L1MC1 LINE L1 5422 6554 -15 24 0 0 0 chr15 43324469 43324493 -58056028 + AT_rich Low_complexity Low_complexity 1 24 0 1938 158 90 20 chr15 43324517 43324916 -58055605 - MSTA LTR MaLR -1 427 1 23 33 0 0 chr15 43326293 43326323 -58054198 + AT_rich Low_complexity Low_complexity 1 30 0 216 97 0 0 chr15 43327147 43327178 -58053343 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 585 216 182 0 chr15 43327314 43327462 -58053059 - MER69A DNA AcHobo -2 175 1 480 261 121 25 chr15 43327494 43327651 -58052870 + MIR SINE MIR 85 256 -6 2401 64 0 6 chr15 43328942 43329255 -58051266 + AluY SINE Alu 1 311 0 188 342 70 63 chr15 43329295 43329453 -58051068 - L2 LINE L2 -601 2713 2555 36 53 0 0 chr15 43329903 43329960 -58050561 + AT_rich Low_complexity Low_complexity 1 57 0 481 252 173 18 chr15 43330201 43330427 -58050094 - L1ME3A LINE L1 -244 5926 5666 194 227 0 0 chr15 43331811 43331855 -58048666 + L2 LINE L2 3270 3313 0 183 42 0 0 chr15 43332335 43332359 -58048162 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 308 379 42 25 chr15 43332535 43332775 -58047746 - L2 LINE L2 -211 3061 2818 1805 245 40 30 chr15 43334028 43334382 -58046139 + L1M4 LINE L1 4017 4383 -1763 2001 111 0 7 chr15 43334382 43334662 -58045859 + AluSg SINE Alu 16 293 -17 1805 245 40 30 chr15 43334662 43334951 -58045570 + L1M4 LINE L1 4383 4667 -1479 1258 104 0 16 chr15 43334940 43335122 -58045399 - THE1-int LTR MaLR -164 1416 1238 * 1518 260 28 12 chr15 43335132 43335639 -58044882 + L1M4 LINE L1 4660 5174 -972 1058 118 43 0 chr15 43335639 43335800 -58044721 - THE1C LTR MaLR 0 375 208 2526 117 0 3 chr15 43335802 43336145 -58044376 + THE1C LTR MaLR 34 375 0 943 246 0 0 chr15 43336145 43336348 -58044173 + L1PA16 LINE L1 5962 6164 -2 238 318 125 0 chr15 43336616 43336704 -58043817 + L2 LINE L2 3143 3241 -31 679 227 31 49 chr15 43336741 43336966 -58043555 - MER65B LTR ERV1 -129 402 182 22 70 0 0 chr15 43337390 43337433 -58043088 + AT_rich Low_complexity Low_complexity 1 43 0 300 321 186 0 chr15 43337669 43337884 -58042637 - L1ME4a LINE L1 -3 6118 5864 338 240 123 39 chr15 43337906 43338085 -58042436 - L1ME4a LINE L1 -1 6120 5927 321 325 58 37 chr15 43338088 43338279 -58042242 - L1ME3A LINE L1 -563 5558 5364 42843 35 21 1 chr15 43339426 43345454 -58035067 + L1PA2 LINE L1 1 6150 -5 34 42 0 0 chr15 43345471 43345519 -58035002 + AT_rich Low_complexity Low_complexity 1 48 0 1444 211 63 0 chr15 43345658 43345961 -58034560 - L1MC1 LINE L1 -23 6310 5989 279 303 174 8 chr15 43346723 43346855 -58033666 - L2 LINE L2 0 3313 3160 199 244 0 0 chr15 43347109 43347154 -58033367 - MIR3 SINE MIR -12 196 152 312 287 33 16 chr15 43347154 43347276 -58033245 - MER117 DNA MER1_type 0 197 74 1053 285 50 67 chr15 43347791 43348170 -58032351 - L2 LINE L2 0 3313 2942 2250 87 0 3 chr15 43348170 43348456 -58032065 - AluSc SINE Alu -24 285 1 1053 285 50 67 chr15 43348456 43348571 -58031950 - L2 LINE L2 -371 2942 2827 2834 10 0 0 chr15 43348672 43348981 -58031540 - AluYa5 SINE Alu -2 309 1 556 281 49 30 chr15 43349994 43350197 -58030324 + MIR SINE MIR 53 259 -3 1628 168 7 105 chr15 43350538 43350948 -58029573 - MLT1A2 LTR MaLR 0 374 5 570 283 126 44 chr15 43351065 43351454 -58029067 + MLT1H LTR MaLR 124 544 -5 772 282 115 42 chr15 43351704 43352105 -58028416 - MLT1J LTR MaLR 0 511 82 489 211 22 60 chr15 43352386 43352571 -58027950 - L1MC5 LINE L1 -30 7931 7754 186 43 0 0 chr15 43353717 43353740 -58026781 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 495 158 9 70 chr15 43354461 43354575 -58025946 + MER53 DNA DNA 1 107 -82 820 168 25 6 chr15 43354933 43355094 -58025427 - L1MB1 LINE L1 -1 6167 6004 23 33 0 0 chr15 43355153 43355183 -58025338 + AT_rich Low_complexity Low_complexity 1 30 0 1944 203 84 36 chr15 43355501 43355975 -58024546 - MLT1D LTR MaLR -8 497 1 585 254 180 0 chr15 43356383 43356572 -58023949 + MIR SINE MIR 5 227 -35 211 380 0 0 chr15 43357241 43357320 -58023201 - L2 LINE L2 -3 3310 3232 22 0 0 0 chr15 43358447 43358469 -58022052 + GC_rich Low_complexity Low_complexity 1 22 0 399 234 21 0 chr15 43359862 43360007 -58020514 + (TA)n Simple_repeat Simple_repeat 1 148 0 272 238 16 0 chr15 43363039 43363102 -58017419 + CT-rich Low_complexity Low_complexity 1 64 0 1335 220 0 14 chr15 43364785 43365071 -58015450 + AluJb SINE Alu 5 286 -26 1036 284 150 0 chr15 43365875 43366209 -58014312 + L2 LINE L2 1117 1500 -1814 304 313 78 35 chr15 43366215 43366445 -58014076 + L1ME LINE L1 5523 5762 -359 395 361 61 0 chr15 43366791 43366971 -58013550 + L2 LINE L2 2476 2666 -648 642 257 76 0 chr15 43366992 43367163 -58013358 + MIR SINE MIR 5 188 -74 1285 154 31 18 chr15 43367163 43367390 -58013131 + MER46A DNA MER2_type 6 235 -1 261 341 16 23 chr15 43367416 43367545 -58012976 + L2 LINE L2 2709 2836 -478 203 0 37 0 chr15 43367545 43367572 -58012949 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 539 313 84 43 chr15 43367580 43367951 -58012570 + L2 LINE L2 2921 3306 -7 540 81 0 0 chr15 43367957 43368031 -58012490 + (TGGA)n Simple_repeat Simple_repeat 1 74 0 202 348 45 9 chr15 43369328 43369440 -58011081 - MIR SINE MIR -51 211 96 497 163 0 11 chr15 43371905 43371997 -58008524 - L1MA8 LINE L1 -426 5874 5784 1801 146 60 3 chr15 43371997 43372358 -58008163 + L1MA8 LINE L1 5904 6288 -3 376 335 72 31 chr15 43373726 43373920 -58006601 - MIR SINE MIR -3 259 58 21 0 0 0 chr15 43374311 43374332 -58006189 + AT_rich Low_complexity Low_complexity 1 21 0 2257 149 82 9 chr15 43375465 43375984 -58004537 + LTR35 LTR ERV1 1 618 0 4306 148 11 13 chr15 43376018 43376730 -58003791 + MER50 LTR ERV1 1 711 -23 1566 164 164 31 chr15 43377040 43377429 -58003092 + LTR48 LTR ERV1 3 443 -344 695 149 49 26 chr15 43377444 43377658 -58002863 + LTR48 LTR ERV1 550 707 0 324 271 167 31 chr15 43378520 43378712 -58001809 + MIR SINE MIR 41 258 -4 205 244 0 0 chr15 43378862 43378903 -58001618 - L2 LINE L2 -19 3294 3254 23 0 0 0 chr15 43379445 43379468 -58001053 + AT_rich Low_complexity Low_complexity 1 23 0 31 26 0 0 chr15 43379628 43379666 -58000855 + AT_rich Low_complexity Low_complexity 1 38 0 333 267 19 38 chr15 43380237 43380342 -58000179 - MIR SINE MIR -66 142 40 199 321 125 30 chr15 43381649 43381817 -57998704 + MER5A DNA MER1_type 3 186 -3 513 0 0 0 chr15 43381889 43381946 -57998575 + (CA)n Simple_repeat Simple_repeat 1 57 0 732 319 12 16 chr15 43381951 43382199 -57998322 + MIR SINE MIR 12 258 -4 245 296 70 49 chr15 43382639 43382781 -57997740 + MIR3 SINE MIR 32 176 -32 367 285 80 0 chr15 43383095 43383246 -57997275 + MER103 DNA DNA 3 165 -1 2168 91 27 3 chr15 43384388 43384684 -57995837 + AluSc SINE Alu 1 303 -6 293 326 42 0 chr15 43385125 43385269 -57995252 - L1MC4a LINE L1 -1894 5914 5765 235 276 13 13 chr15 43386764 43386840 -57993681 + MIR SINE MIR 174 249 -13 376 191 169 74 chr15 43386933 43387122 -57993399 + MER3 DNA MER1_type 2 208 -1 * 903 144 64 43 chr15 43387122 43387170 -57993351 - MER3 DNA MER1_type -157 52 1 416 190 17 69 chr15 43387189 43387305 -57993216 + MER3 DNA MER1_type 100 209 0 22 56 0 0 chr15 43389822 43389858 -57990663 + AT_rich Low_complexity Low_complexity 1 36 0 436 271 41 60 chr15 43390523 43390789 -57989732 + L1MC4a LINE L1 5260 5520 -2288 963 184 48 14 chr15 43390789 43391101 -57989420 + MLT1A1 LTR MaLR 1 365 0 479 281 92 37 chr15 43391110 43391459 -57989062 + L1MC4a LINE L1 5525 5892 -1916 252 0 0 0 chr15 43391462 43391490 -57989031 + (TG)n Simple_repeat Simple_repeat 2 29 0 297 277 21 0 chr15 43391646 43391740 -57988781 + (TA)n Simple_repeat Simple_repeat 1 96 0 339 25 0 0 chr15 43391762 43391802 -57988719 + (CA)n Simple_repeat Simple_repeat 2 41 0 254 318 36 67 chr15 43391961 43392156 -57988365 + MIR SINE MIR 74 262 0 662 305 33 9 chr15 43392613 43392844 -57987677 - MIR SINE MIR -13 249 18 2155 247 14 43 chr15 43393591 43394146 -57986375 - MLT1H LTR MaLR -2 547 9 902 299 66 28 chr15 43394944 43395366 -57985155 + LTR33 LTR ERVL 30 467 -54 1646 202 50 17 chr15 43395455 43395871 -57984650 + Charlie4a DNA MER1_type 46 475 -33 312 143 0 0 chr15 43395897 43395953 -57984568 + (CA)n Simple_repeat Simple_repeat 1 56 0 225 296 182 30 chr15 43396655 43396787 -57983734 + L2 LINE L2 3121 3272 0 1229 27 0 0 chr15 43397918 43398066 -57982455 + L1PA2 LINE L1 6008 6155 0 35 0 0 0 chr15 43398066 43398101 -57982420 + AT_rich Low_complexity Low_complexity 1 35 0 661 255 6 35 chr15 43398263 43398446 -57982075 - MIR SINE MIR 0 262 88 292 156 0 0 chr15 43398539 43398584 -57981937 + L2 LINE L2 3267 3311 -2 2007 146 15 35 chr15 43399092 43399415 -57981106 - L1MC/D LINE L1 -716 5617 5301 2193 101 7 7 chr15 43399415 43399723 -57980798 - AluSq SINE Alu -3 310 3 2007 146 15 35 chr15 43399723 43399800 -57980721 - L1MC/D LINE L1 -1032 5301 5224 2027 211 67 2 chr15 43399843 43400279 -57980242 + MLT1C LTR MaLR 4 467 0 697 98 30 37 chr15 43401301 43401465 -57979056 + CT-rich Low_complexity Low_complexity 4 166 0 276 130 0 0 chr15 43401465 43401511 -57979010 + (CA)n Simple_repeat Simple_repeat 1 46 0 209 171 76 32 chr15 43401748 43401906 -57978615 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 * 436 190 46 11 chr15 43401788 43401962 -57978559 + (TA)n Simple_repeat Simple_repeat 1 180 0 243 0 0 0 chr15 43401983 43402033 -57978488 + (CA)n Simple_repeat Simple_repeat 1 77 0 243 0 0 0 chr15 43402033 43402060 -57978461 + (CA)n Simple_repeat Simple_repeat 2 28 0 259 179 77 39 chr15 43402779 43402857 -57977664 + L2 LINE L2 3190 3270 -2 245 293 37 0 chr15 43402868 43402950 -57977571 - MIR3 SINE MIR -9 199 115 736 187 44 16 chr15 43403786 43403968 -57976553 - MER53 DNA DNA -2 187 1 755 171 30 80 chr15 43404531 43404730 -57975791 + MER5A DNA MER1_type 1 189 0 182 208 19 0 chr15 43404977 43405030 -57975491 + CT-rich Low_complexity Low_complexity 2 55 0 4774 219 25 43 chr15 43405732 43406422 -57974099 - L1MB5 LINE L1 -9 6165 5464 270 0 0 0 chr15 43406422 43406452 -57974069 + (TG)n Simple_repeat Simple_repeat 2 31 0 4774 219 25 43 chr15 43406452 43407913 -57972608 - L1MB5 LINE L1 -710 5464 4051 1092 223 8 20 chr15 43407929 43408180 -57972341 + L1M4 LINE L1 494 741 -5801 29 0 0 0 chr15 43408215 43408244 -57972277 + AT_rich Low_complexity Low_complexity 1 29 0 5873 144 23 3 chr15 43408247 43409682 -57970839 - L1PB3 LINE L1 -5 6149 4686 938 293 98 39 chr15 43409692 43410132 -57970389 - L1M4 LINE L1 -6072 470 5 298 358 136 6 chr15 43412375 43412537 -57967984 + L2 LINE L2 3085 3267 -5 3259 135 7 30 chr15 43412847 43413386 -57967135 + MER1A DNA MER1_type 1 527 0 182 278 0 19 chr15 43413401 43413455 -57967066 + MER5B DNA MER1_type 123 175 -3 362 284 128 14 chr15 43413567 43413715 -57966806 + MIR SINE MIR 61 225 -37 242 296 169 14 chr15 43413774 43413916 -57966605 + MIR SINE MIR 99 262 0 263 345 109 0 chr15 43414223 43414342 -57966179 + MIR SINE MIR 93 224 -38 188 356 40 20 chr15 43414894 43414995 -57965526 - MIR SINE MIR -111 151 49 197 119 24 0 chr15 43415303 43415345 -57965176 + T-rich Low_complexity Low_complexity 2 44 0 373 313 50 31 chr15 43415868 43416087 -57964434 + MIR SINE MIR 20 246 -16 480 78 0 0 chr15 43416107 43416171 -57964350 - MADE1 DNA Mariner -4 76 13 23 33 0 0 chr15 43416603 43416633 -57963888 + AT_rich Low_complexity Low_complexity 1 30 0 728 250 70 29 chr15 43417731 43417975 -57962546 - L2 LINE L2 0 3313 3060 355 280 66 41 chr15 43418104 43418302 -57962219 + MIR SINE MIR 5 214 -48 656 288 28 28 chr15 43418339 43418551 -57961970 - MIR SINE MIR -38 224 13 4203 126 42 6 chr15 43418594 43419268 -57961253 - L1PA16 LINE L1 -10 6156 5459 259 314 77 52 chr15 43420000 43420325 -57960196 - LTR33 LTR ERVL -6 515 183 * 1505 205 99 48 chr15 43420323 43420737 -57959784 - MLT1D LTR MaLR -68 437 3 2096 120 0 0 chr15 43422841 43423156 -57957365 + AluSx SINE Alu 1 315 0 276 232 12 49 chr15 43423229 43423311 -57957210 - L2 LINE L2 -1 3312 3234 540 158 0 0 chr15 43424224 43424319 -57956202 + GA-rich Low_complexity Low_complexity 2 96 0 281 30 0 0 chr15 43424336 43424369 -57956152 + (GAAA)n Simple_repeat Simple_repeat 3 35 0 272 274 305 26 chr15 43425097 43425323 -57955198 - L3 LINE CR1 -50 1527 1239 857 175 6 62 chr15 43425597 43425803 -57954718 - L1M1 LINE L1 -797 5506 5318 2650 7 0 7 chr15 43425803 43426095 -57954426 - AluY SINE Alu -4 307 18 857 175 6 62 chr15 43426095 43426142 -57954379 - L1M1 LINE L1 -985 5318 5270 4920 172 17 6 chr15 43426153 43427044 -57953477 - L1MA6 LINE L1 0 6300 5400 7635 164 23 57 chr15 43427108 43428772 -57951749 - L1MA6 LINE L1 -847 5299 3692 387 285 23 12 chr15 43429720 43429875 -57950646 - L1MDb LINE L1 -1897 4509 4350 2363 94 0 0 chr15 43429875 43430174 -57950347 - AluY SINE Alu -12 299 1 387 285 23 12 chr15 43430174 43430190 -57950331 - L1MDb LINE L1 -2056 4350 4336 * 4740 209 82 52 chr15 43430176 43431105 -57949416 - L1MDb LINE L1 -3056 3350 2450 2340 189 6 73 chr15 43431105 43431655 -57948866 + MLT2B2 LTR ERVL 3 515 0 4740 209 82 52 chr15 43431655 43433937 -57946584 - L1MDb LINE L1 -3956 2450 28 246 336 31 39 chr15 43434009 43434137 -57946384 + L2 LINE L2 3158 3284 -29 1971 196 43 37 chr15 43434325 43434814 -57945707 - L1MB8 LINE L1 -1 6988 6497 * 5842 158 5 10 chr15 43434809 43435120 -57945401 + L1PA13 LINE L1 4299 4610 -1553 1922 149 65 14 chr15 43435120 43435475 -57945046 - THE1C LTR MaLR -2 373 1 5842 158 5 10 chr15 43435475 43436446 -57944075 + L1PA13 LINE L1 4610 5575 -588 3248 123 16 2 chr15 43436671 43437177 -57943344 + L1PA13 LINE L1 5632 6144 -19 887 230 14 10 chr15 43437197 43437406 -57943115 - L1MB8 LINE L1 -487 6502 6293 2681 245 22 25 chr15 43437438 43438225 -57942296 - L1MB8 LINE L1 -1992 4965 4182 * 5149 259 57 43 chr15 43438220 43439862 -57940659 - L1MB8 LINE L1 -5189 1670 6 891 291 73 40 chr15 43439861 43440429 -57940092 - HAL1b LINE L1 -650 698 109 * 548 285 146 0 chr15 43440826 43440984 -57939537 + MER5A DNA MER1_type 9 189 0 452 248 241 0 chr15 43440984 43441121 -57939400 - MER5B DNA MER1_type -8 170 1 186 378 0 22 chr15 43441786 43441876 -57938645 - L3 LINE CR1 -557 1020 933 220 234 0 0 chr15 43442367 43442414 -57938107 + T-rich Low_complexity Low_complexity 4 50 0 275 130 48 75 chr15 43442910 43443056 -57937465 + (TTATA)n Simple_repeat Simple_repeat 5 146 0 * 278 154 77 0 chr15 43442967 43443058 -57937463 + (TA)n Simple_repeat Simple_repeat 2 99 0 903 243 68 14 chr15 43443058 43443424 -57937097 - L1M4 LINE L1 -1733 4413 4028 1572 123 0 5 chr15 43443549 43443768 -57936753 + AluSq SINE Alu 1 218 -95 340 157 0 29 chr15 43444008 43444078 -57936443 - MER92C LTR ERV1 0 554 487 488 224 25 87 chr15 43444142 43444338 -57936183 - MER92C LTR ERV1 -370 184 1 306 156 13 13 chr15 43444963 43445040 -57935481 - MER31-int LTR ERV1 -489 4447 4371 512 214 141 34 chr15 43445107 43445313 -57935208 - LTR37A LTR ERV1 -198 228 1 1276 226 24 57 chr15 43445314 43445435 -57935086 - MER31-int LTR ERV1 -687 4249 4126 955 118 0 157 chr15 43445435 43445664 -57934857 + 7SK RNA RNA 1 193 0 1276 226 24 57 chr15 43445664 43445913 -57934608 - MER31-int LTR ERV1 -810 4126 3891 12688 141 14 17 chr15 43448169 43450416 -57930105 + Tigger1 DNA MER2_type 6 2246 -172 392 0 0 20 chr15 43450416 43450465 -57930056 + (TTA)n Simple_repeat Simple_repeat 3 50 0 7635 29 0 0 chr15 43450465 43454498 -57926023 - L1PA3 LINE L1 -18 6137 2017 591 254 48 0 chr15 43454498 43454663 -57925858 + Tigger1 DNA MER2_type 2244 2416 -2 281 315 91 21 chr15 43454716 43454859 -57925662 - MIR SINE MIR -108 154 2 887 282 30 22 chr15 43455053 43455418 -57925103 - L1ME3A LINE L1 -168 6002 5635 193 297 0 79 chr15 43457210 43457311 -57923210 + MIR3 SINE MIR 111 203 -5 222 105 0 0 chr15 43458069 43458107 -57922414 + (TC)n Simple_repeat Simple_repeat 2 39 0 1366 167 107 29 chr15 43459141 43459525 -57920996 - Charlie1 DNA MER1_type -5 2756 2343 495 245 38 10 chr15 43460017 43460190 -57920331 + MLT1I LTR MaLR 267 409 0 1828 169 86 51 chr15 43460618 43461027 -57919494 - MSTB LTR MaLR -3 423 1 448 307 40 7 chr15 43461242 43461392 -57919129 - MIR SINE MIR -71 191 37 189 222 0 0 chr15 43461440 43461503 -57919018 + (TGAA)n Simple_repeat Simple_repeat 1 63 0 2265 103 0 0 chr15 43461966 43462257 -57918264 + AluSg SINE Alu 18 308 -2 231 280 8 17 chr15 43463367 43463485 -57917036 + (TA)n Simple_repeat Simple_repeat 1 117 0 204 211 0 19 chr15 43464665 43464717 -57915804 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 1963 128 43 0 chr15 43467076 43467357 -57913164 - AluSg SINE Alu -17 293 1 30 0 0 0 chr15 43470013 43470043 -57910478 + AT_rich Low_complexity Low_complexity 1 30 0 585 326 141 18 chr15 43470377 43470930 -57909591 - L2 LINE L2 0 3313 2688 442 312 70 5 chr15 43471690 43471876 -57908645 - MIR SINE MIR 0 262 65 201 308 0 0 chr15 43473215 43473267 -57907254 - L2 LINE L2 -15 3257 3206 215 355 109 0 chr15 43473957 43474067 -57906454 + MIR3 SINE MIR 87 208 0 249 240 0 0 chr15 43474951 43475001 -57905520 - MIR SINE MIR -131 131 82 1480 195 58 72 chr15 43475264 43475767 -57904754 + MLT1D LTR MaLR 1 496 -9 826 318 123 17 chr15 43476184 43476533 -57903988 + L2 LINE L2 2927 3312 -1 1847 105 112 14 chr15 43477016 43477301 -57903220 + AluSq SINE Alu 1 313 0 503 291 0 28 chr15 43477897 43478038 -57902483 + MER5A DNA MER1_type 43 179 -10 2298 105 0 10 chr15 43478813 43479119 -57901402 - AluSc SINE Alu -6 303 1 2086 129 24 0 chr15 43479276 43479570 -57900951 + AluSx SINE Alu 1 301 -11 736 186 114 48 chr15 43479852 43480062 -57900459 + MIR SINE MIR 39 262 0 403 274 147 71 chr15 43481052 43481249 -57899272 + MIR SINE MIR 41 252 -10 364 229 60 0 chr15 43481900 43481981 -57898540 - MER47A DNA MER2_type 0 366 281 2191 180 23 16 chr15 43481981 43482408 -57898113 + Tigger7 DNA MER2_type 1 430 -2057 325 215 28 93 chr15 43482403 43482510 -57898011 + Tigger7 DNA MER2_type 2488 2587 0 * 1677 129 14 4 chr15 43482510 43482789 -57897732 - MER47A DNA MER2_type -84 282 1 235 267 109 20 chr15 43483500 43483601 -57896920 - MIR SINE MIR -70 192 83 874 206 69 45 chr15 43485444 43485773 -57894748 - MER33 DNA MER1_type 0 324 1 6356 191 26 45 chr15 43485792 43486393 -57894128 - L1MC1 LINE L1 0 6613 6002 183 80 0 0 chr15 43486393 43486418 -57894103 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1322 211 25 21 chr15 43486420 43486700 -57893821 - AluJo SINE Alu -31 281 1 6356 191 26 45 chr15 43486700 43487153 -57893368 - L1MC1 LINE L1 -612 6001 5541 2793 13 0 0 chr15 43487153 43487458 -57893063 + AluYa5 SINE Alu 1 305 -6 6356 191 26 45 chr15 43487458 43487690 -57892831 - L1MC1 LINE L1 -1072 5541 5306 2742 29 0 3 chr15 43487690 43488002 -57892519 - AluY SINE Alu 0 311 1 6356 191 26 45 chr15 43488002 43488930 -57891591 - L1MC1 LINE L1 -1307 5306 4472 2228 111 3 0 chr15 43488930 43489228 -57891293 - AluSx SINE Alu -13 299 1 6356 191 26 45 chr15 43489228 43490215 -57890306 - L1MC1 LINE L1 -2141 4472 3467 1731 162 51 11 chr15 43490217 43490878 -57889643 - L1MC1 LINE L1 -4457 1969 1194 23 33 0 0 chr15 43490973 43491003 -57889518 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr15 43491077 43491107 -57889414 + AT_rich Low_complexity Low_complexity 1 30 0 6374 15 0 0 chr15 43491107 43491826 -57888695 - L1PA3 LINE L1 -4 6151 5433 186 43 0 0 chr15 43491847 43491870 -57888651 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 4179 183 54 30 chr15 43491870 43492975 -57887546 - L1MC1 LINE L1 -5236 1190 24 223 321 176 18 chr15 43493017 43493182 -57887339 + L2 LINE L2 2286 2476 -838 270 320 99 77 chr15 43493368 43493811 -57886710 + L2 LINE L2 2813 3265 -7 2016 220 90 35 chr15 43494958 43495645 -57884876 - L1MC4a LINE L1 -2 7806 7082 192 152 0 0 chr15 43495823 43495856 -57884665 + (CCTA)n Simple_repeat Simple_repeat 2 34 0 788 219 42 137 chr15 43496096 43496562 -57883959 - LTR28 LTR ERV1 -141 894 5 319 207 7 29 chr15 43497459 43497599 -57882922 + (TA)n Simple_repeat Simple_repeat 2 138 0 218 217 0 0 chr15 43497613 43497659 -57882862 + (TA)n Simple_repeat Simple_repeat 1 46 0 337 264 53 24 chr15 43497670 43497878 -57882643 - L1ME4a LINE L1 -216 5905 5692 2389 77 7 0 chr15 43497997 43498307 -57882214 - AluSq SINE Alu 0 313 2 580 282 24 28 chr15 43499967 43500180 -57880341 + MIR SINE MIR 48 259 -3 365 318 103 40 chr15 43500689 43500912 -57879609 - MIR SINE MIR -6 256 20 181 327 0 18 chr15 43501165 43501220 -57879301 - MER5B DNA MER1_type -38 140 87 392 256 50 8 chr15 43501877 43501998 -57878523 - L2 LINE L2 0 3313 3188 396 256 137 30 chr15 43502494 43502662 -57877859 + MER5A DNA MER1_type 1 186 -3 428 353 131 22 chr15 43503414 43503689 -57876832 - L2 LINE L2 0 3272 2968 295 279 101 48 chr15 43504144 43504560 -57875961 + L1ME4a LINE L1 5652 6089 -32 579 237 13 39 chr15 43506449 43506605 -57873916 - L2 LINE L2 0 3313 3162 4261 169 101 18 chr15 43506615 43507474 -57873047 + MER21A LTR ERV1 1 931 0 10417 190 51 18 chr15 43507534 43510768 -57869753 + MER21A-int LTR ERV1 1189 3490 -701 2279 164 26 24 chr15 43510768 43511230 -57869291 + MER21A-int LTR ERV1 3594 4056 -135 1048 40 0 0 chr15 43511232 43511357 -57869164 + L1MA1 LINE L1 6174 6298 -4 598 124 0 0 chr15 43511401 43511490 -57869031 + MER21A-int LTR ERV1 4048 4136 -55 3511 174 111 28 chr15 43511615 43512375 -57868146 + MER21A LTR ERV1 103 925 -6 1690 174 44 0 chr15 43512423 43512716 -57867805 + AluJb SINE Alu 1 306 -6 198 167 0 0 chr15 43512716 43512752 -57867769 + GA-rich Low_complexity Low_complexity 1 36 0 670 292 88 21 chr15 43512764 43513076 -57867445 - L2 LINE L2 -189 3124 2794 2243 99 26 0 chr15 43513950 43514252 -57866269 + AluSx SINE Alu 1 310 -2 286 301 87 23 chr15 43514286 43514459 -57866062 + MIR SINE MIR 9 192 -70 25 31 0 0 chr15 43514473 43514505 -57866016 + AT_rich Low_complexity Low_complexity 1 32 0 207 0 0 0 chr15 43514867 43514890 -57865631 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 352 259 92 35 chr15 43514906 43515212 -57865309 + MER93b LTR ERV1 18 373 0 2150 127 0 7 chr15 43515550 43515849 -57864672 - AluSx SINE Alu -15 297 1 228 35 0 0 chr15 43516081 43516110 -57864411 + (TTA)n Simple_repeat Simple_repeat 3 31 0 4581 32 0 0 chr15 43516110 43516648 -57863873 - L1PA4 LINE L1 -18 6137 5600 2593 30 23 0 chr15 43516648 43517020 -57863501 + L1PA4 LINE L1 5215 5593 -562 21 36 0 0 chr15 43517025 43517053 -57863468 + AT_rich Low_complexity Low_complexity 1 28 0 1555 249 12 10 chr15 43517128 43517533 -57862988 + L1ME2 LINE L1 36 441 -5955 * 2956 225 48 32 chr15 43517531 43518541 -57861980 + L1ME2 LINE L1 4182 5208 -1007 587 245 68 47 chr15 43518549 43518827 -57861694 + L1ME2 LINE L1 5940 6223 -10 22 0 0 0 chr15 43518832 43518854 -57861667 + AT_rich Low_complexity Low_complexity 1 22 0 209 278 99 105 chr15 43519132 43519294 -57861227 + MIR3 SINE MIR 20 180 -28 21 0 0 0 chr15 43519582 43519603 -57860918 + AT_rich Low_complexity Low_complexity 1 21 0 2119 135 10 0 chr15 43519735 43520039 -57860482 - AluSx SINE Alu 0 312 6 852 228 43 21 chr15 43521042 43521275 -57859246 + MIR SINE MIR 25 262 0 577 174 0 0 chr15 43521292 43521390 -57859131 + Tigger4(Zombi) DNA MER2_type 2 99 -2632 383 0 21 0 chr15 43521510 43521557 -57858964 + (CA)n Simple_repeat Simple_repeat 1 48 0 351 0 0 0 chr15 43521556 43521595 -57858926 + (GA)n Simple_repeat Simple_repeat 2 40 0 * 191 336 109 18 chr15 43521639 43521749 -57858772 - L2 LINE L2 -212 3060 2941 200 35 35 0 chr15 43522736 43522765 -57857756 + (CAA)n Simple_repeat Simple_repeat 3 32 0 438 266 47 16 chr15 43524279 43524407 -57856114 - MIR SINE MIR -55 207 76 189 107 0 0 chr15 43525894 43525922 -57854599 + (TATG)n Simple_repeat Simple_repeat 3 30 0 280 347 78 60 chr15 43526268 43526599 -57853922 + L2 LINE L2 2936 3272 0 213 260 13 13 chr15 43526890 43526967 -57853554 + (TA)n Simple_repeat Simple_repeat 1 77 0 213 121 0 0 chr15 43527014 43527047 -57853474 + (TA)n Simple_repeat Simple_repeat 1 33 0 192 152 0 0 chr15 43527110 43527143 -57853378 + (TA)n Simple_repeat Simple_repeat 2 34 0 226 200 15 15 chr15 43527178 43527243 -57853278 + (TA)n Simple_repeat Simple_repeat 2 66 0 460 211 8 8 chr15 43527304 43527437 -57853084 + (TA)n Simple_repeat Simple_repeat 1 133 0 195 100 0 0 chr15 43529310 43529340 -57851181 + (GGA)n Simple_repeat Simple_repeat 1 30 0 2250 71 7 0 chr15 43529861 43530171 -57850350 + AluY SINE Alu 1 312 0 180 0 0 0 chr15 43530205 43530225 -57850296 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2646 69 3 0 chr15 43530283 43530633 -57849888 - MLT2A1 LTR ERVL -93 351 1 297 292 18 9 chr15 43531948 43532061 -57848460 + (TATATG)n Simple_repeat Simple_repeat 6 119 0 437 181 172 9 chr15 43532128 43532244 -57848277 + MIR SINE MIR 104 238 -24 831 231 51 5 chr15 43533175 43533370 -57847151 - MER3 DNA MER1_type -4 205 2 385 297 122 14 chr15 43534195 43534343 -57846178 + MIR3 SINE MIR 21 184 -24 330 336 23 8 chr15 43534365 43534496 -57846025 + L2 LINE L2 3138 3270 -2 197 83 28 0 chr15 43535842 43535878 -57844643 + (TAA)n Simple_repeat Simple_repeat 2 38 0 773 271 63 9 chr15 43535880 43536101 -57844420 - MIR SINE MIR -23 239 7 259 254 164 57 chr15 43536216 43536338 -57844183 - MER45A DNA AcHobo -43 135 1 1793 123 74 49 chr15 43536538 43536904 -57843617 - THE1C LTR MaLR 0 375 1 2341 96 0 0 chr15 43538387 43538680 -57841841 + AluSx SINE Alu 1 293 -19 618 101 28 0 chr15 43538680 43538789 -57841732 + GA-rich Low_complexity Low_complexity 1 112 0 354 318 87 0 chr15 43539064 43539190 -57841331 - MER91C DNA MER1_type -3 137 1 322 288 87 80 chr15 43539362 43539661 -57840860 - L2 LINE L2 -168 3104 2804 455 290 159 14 chr15 43539797 43540011 -57840510 + MIR SINE MIR 11 255 -7 21 0 0 0 chr15 43540351 43540372 -57840149 + AT_rich Low_complexity Low_complexity 1 21 0 312 188 0 0 chr15 43540480 43540544 -57839977 + (CA)n Simple_repeat Simple_repeat 2 65 0 195 42 0 0 chr15 43540544 43540568 -57839953 + (GA)n Simple_repeat Simple_repeat 2 25 0 1302 0 0 0 chr15 43541277 43541449 -57839072 - AluYa5 SINE Alu 0 309 138 767 219 124 0 chr15 43541830 43542095 -57838426 + L1ME3A LINE L1 5865 6162 -8 540 297 103 6 chr15 43542716 43542891 -57837630 - MIR SINE MIR -34 228 37 1621 202 0 0 chr15 43543060 43543347 -57837174 + AluSx SINE Alu 12 298 -14 1852 138 0 66 chr15 43543379 43543698 -57836823 + AluSx SINE Alu 1 298 -14 571 321 41 16 chr15 43544626 43544872 -57835649 - MIR SINE MIR -10 252 1 2126 130 3 0 chr15 43551031 43551332 -57829189 + AluSx SINE Alu 1 302 -10 214 282 0 56 chr15 43552411 43552482 -57828039 - L2 LINE L2 -212 3060 2994 25 31 0 0 chr15 43552543 43552575 -57827946 + AT_rich Low_complexity Low_complexity 1 32 0 2225 93 7 0 chr15 43552582 43552872 -57827649 - AluSp SINE Alu -21 292 1 2254 85 10 7 chr15 43555045 43555338 -57825183 + AluY SINE Alu 3 296 -15 2054 114 4 0 chr15 43555604 43555875 -57824646 - AluSx SINE Alu -32 280 9 383 276 81 11 chr15 43556384 43556558 -57823963 - MIR SINE MIR 0 262 77 279 0 0 0 chr15 43557632 43557663 -57822858 + (T)n Simple_repeat Simple_repeat 1 31 0 180 0 0 0 chr15 43557863 43557883 -57822638 + (T)n Simple_repeat Simple_repeat 1 20 0 21 82 0 0 chr15 43558494 43558543 -57821978 + AT_rich Low_complexity Low_complexity 1 49 0 632 309 33 31 chr15 43558688 43558946 -57821575 + MIR SINE MIR 2 255 -7 805 328 71 5 chr15 43559185 43559606 -57820915 - LTR16B LTR ERVL -10 454 6 214 320 77 0 chr15 43560069 43560147 -57820374 - MIR SINE MIR -96 166 83 527 336 58 0 chr15 43560182 43560405 -57820116 + MIR SINE MIR 21 256 -6 680 262 15 72 chr15 43560543 43560806 -57819715 + MIR SINE MIR 14 261 -1 1267 191 3 57 chr15 43561110 43561392 -57819129 + Tigger7 DNA MER2_type 1 267 -2220 366 171 146 12 chr15 43561405 43561487 -57819034 + Tigger7 DNA MER2_type 2495 2587 0 730 211 33 28 chr15 43561937 43562117 -57818404 + MIR SINE MIR 79 259 -3 359 327 212 4 chr15 43562530 43562808 -57817713 + L2 LINE L2 2418 2753 -561 294 220 100 30 chr15 43562877 43562977 -57817544 - MLT1F LTR MaLR -25 517 411 269 261 0 130 chr15 43563329 43563467 -57817054 + L2 LINE L2 2835 2954 -318 196 221 59 44 chr15 43564060 43564128 -57816393 - MIR SINE MIR -121 87 19 729 190 28 0 chr15 43564932 43565074 -57815447 - MER105 DNA DNA -7 197 52 * 1942 192 39 68 chr15 43565073 43565584 -57814937 + MLT1D LTR MaLR 10 505 0 252 194 65 16 chr15 43565584 43565641 -57814880 - MER105 DNA DNA -144 60 1 374 376 24 6 chr15 43566720 43566885 -57813636 - MIR SINE MIR -89 173 6 1562 207 29 45 chr15 43568692 43569069 -57811452 + MLT1A2 LTR MaLR 1 371 -3 2013 169 35 35 chr15 43569077 43569632 -57810889 - MLT2A2 LTR ERVL 0 554 1 408 177 10 52 chr15 43569632 43569728 -57810793 - MER45 DNA AcHobo -22 1559 1468 575 159 61 23 chr15 43569734 43569866 -57810655 - MER45 DNA AcHobo -1394 187 51 294 305 82 67 chr15 43569908 43570177 -57810344 - L2 LINE L2 -888 2426 2154 276 331 46 39 chr15 43570178 43570308 -57810213 + L2 LINE L2 3182 3312 -1 313 245 167 0 chr15 43571674 43571776 -57808745 + MIR SINE MIR 4 122 -140 386 236 81 41 chr15 43571978 43572101 -57808420 - MIR SINE MIR -107 155 28 2081 132 3 0 chr15 43573025 43573321 -57807200 + AluSx SINE Alu 1 297 -15 203 277 108 0 chr15 43573337 43573402 -57807119 - MIR SINE MIR -71 191 120 725 318 31 4 chr15 43573730 43573985 -57806536 + MIR SINE MIR 1 262 0 371 311 91 42 chr15 43574105 43574346 -57806175 - MIR SINE MIR -8 254 2 431 404 17 28 chr15 43574391 43574750 -57805771 + L2 LINE L2 2821 3175 -97 808 191 36 0 chr15 43574866 43575034 -57805487 + MER3 DNA MER1_type 2 128 -81 217 287 50 83 chr15 43575488 43575669 -57804852 + L2 LINE L2 3139 3313 0 180 295 155 111 chr15 43576259 43576601 -57803920 - L2 LINE L2 -10 3262 2906 264 313 135 24 chr15 43577113 43577321 -57803200 - MIR SINE MIR -12 250 20 347 352 102 49 chr15 43577582 43577906 -57802615 - L2 LINE L2 0 3272 2932 381 231 60 22 chr15 43579151 43579285 -57801236 + MIR SINE MIR 78 216 -46 25 0 0 0 chr15 43579341 43579366 -57801155 + AT_rich Low_complexity Low_complexity 1 25 0 1874 143 10 52 chr15 43579374 43579805 -57800716 + L1MA9 LINE L1 5933 6347 0 2122 101 10 32 chr15 43579897 43580205 -57800316 + AluSx SINE Alu 1 301 -11 210 105 0 0 chr15 43580209 43580247 -57800274 + (CAA)n Simple_repeat Simple_repeat 2 39 0 463 216 56 56 chr15 43581001 43581163 -57799358 + MIR SINE MIR 40 201 -61 228 250 0 0 chr15 43581733 43581785 -57798736 + L2 LINE L2 3143 3194 -78 230 250 52 73 chr15 43582306 43582402 -57798119 + MIR3 SINE MIR 110 203 -5 581 314 16 31 chr15 43582409 43582600 -57797921 - MIR3 SINE MIR -11 197 10 1399 175 59 31 chr15 43582813 43583099 -57797422 - AluJb SINE Alu -18 294 1 527 297 22 43 chr15 43583427 43583612 -57796909 + MER5A DNA MER1_type 4 184 -5 225 0 0 0 chr15 43583908 43583933 -57796588 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1961 95 0 0 chr15 43583933 43584185 -57796336 - AluY SINE Alu -33 278 27 22 56 0 0 chr15 43586003 43586039 -57794482 + AT_rich Low_complexity Low_complexity 1 36 0 1763 174 32 29 chr15 43586289 43586599 -57793922 - AluJo SINE Alu -1 311 1 202 296 0 0 chr15 43588308 43588362 -57792159 + CT-rich Low_complexity Low_complexity 4 57 0 345 47 0 0 chr15 43590216 43590259 -57790262 + (TG)n Simple_repeat Simple_repeat 2 44 0 993 298 26 61 chr15 43590656 43591113 -57789408 - L2 LINE L2 0 3313 2873 320 235 0 82 chr15 43591116 43591149 -57789372 - L2 LINE L2 -611 2703 2669 1937 165 58 3 chr15 43591149 43591495 -57789026 - MLT1A1 LTR MaLR 0 365 1 320 235 0 82 chr15 43591495 43591559 -57788962 - L2 LINE L2 -645 2669 2614 457 303 152 0 chr15 43591566 43591711 -57788810 - L2 LINE L2 -1734 1580 1414 3189 291 65 22 chr15 43591720 43592828 -57787693 - L2 LINE L2 -2134 1180 25 23 33 0 0 chr15 43594716 43594746 -57785775 + AT_rich Low_complexity Low_complexity 1 30 0 492 32 0 0 chr15 43594989 43595051 -57785470 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 2974 173 85 44 chr15 43597530 43598286 -57782235 - LTR48 LTR ERV1 0 787 1 768 122 0 0 chr15 43598485 43598592 -57781929 - AluSg/x SINE Alu -10 300 194 599 241 15 15 chr15 43598985 43599118 -57781403 - FLAM_A SINE Alu 0 133 1 180 304 0 0 chr15 43600429 43600475 -57780046 + MIR SINE MIR 72 117 -145 1557 181 34 24 chr15 43601301 43601594 -57778927 + AluSx SINE Alu 1 296 -16 569 153 21 21 chr15 43601725 43601869 -57778652 + GA-rich Low_complexity Low_complexity 1 144 0 374 283 147 8 chr15 43602004 43602161 -57778360 + MIR SINE MIR 21 192 -57 27 29 0 0 chr15 43602558 43602592 -57777929 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr15 43603286 43603309 -57777212 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr15 43604078 43604111 -57776410 + AT_rich Low_complexity Low_complexity 1 33 0 233 245 0 53 chr15 43605301 43605395 -57775126 + L1MC4 LINE L1 6615 6703 -1339 201 161 0 0 chr15 43605403 43605434 -57775087 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 266 229 86 0 chr15 43605835 43605905 -57774616 - L2 LINE L2 -1 3271 3196 29 0 0 0 chr15 43606141 43606170 -57774351 + AT_rich Low_complexity Low_complexity 1 29 0 2242 125 0 0 chr15 43608924 43609228 -57771293 + AluSq SINE Alu 1 304 -9 27 49 0 0 chr15 43609329 43609370 -57771151 + AT_rich Low_complexity Low_complexity 1 41 0 1604 190 32 42 chr15 43609465 43609775 -57770746 + AluJb SINE Alu 1 307 -5 349 176 12 12 chr15 43609785 43609870 -57770651 + GA-rich Low_complexity Low_complexity 5 89 0 224 231 0 46 chr15 43610169 43610234 -57770287 + G-rich Low_complexity Low_complexity 2 63 0 1790 301 108 10 chr15 43611158 43612066 -57768455 + L2 LINE L2 2310 3313 0 723 271 128 40 chr15 43616287 43616835 -57763686 + MLT1G LTR MaLR 1 553 -2 22 0 0 0 chr15 43617771 43617793 -57762728 + AT_rich Low_complexity Low_complexity 1 22 0 2369 178 52 5 chr15 43617798 43618498 -57762023 - LTR1B LTR ERV1 -54 772 1 3401 189 41 53 chr15 43620362 43621170 -57759351 + MER21B LTR ERV1 66 863 0 198 186 23 0 chr15 43621654 43621697 -57758824 + L2 LINE L2 3267 3310 -3 254 194 102 41 chr15 43622294 43622392 -57758129 + Charlie7 DNA MER1_type 46 149 -2463 225 245 119 70 chr15 43623857 43624000 -57756521 - MIR3 SINE MIR -8 200 51 343 321 19 9 chr15 43624908 43625014 -57755507 + L1ME1 LINE L1 5963 6069 -97 261 206 0 0 chr15 43625015 43625078 -57755443 + L1MB8 LINE L1 6107 6169 -9 403 304 61 37 chr15 43625470 43625684 -57754837 + MIR SINE MIR 19 235 -27 23 0 0 0 chr15 43625769 43625792 -57754729 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr15 43626380 43626412 -57754109 + AT_rich Low_complexity Low_complexity 1 32 0 252 0 0 0 chr15 43627742 43627770 -57752751 + (CA)n Simple_repeat Simple_repeat 1 28 0 646 309 57 4 chr15 43627987 43628217 -57752304 + MIR SINE MIR 13 254 -8 240 35 0 0 chr15 43628218 43628247 -57752274 + (TTA)n Simple_repeat Simple_repeat 1 29 0 563 250 7 33 chr15 43628900 43629052 -57751469 + MER69 DNA AcHobo 1 148 -2378 236 258 30 0 chr15 43629167 43629233 -57751288 - MIR SINE MIR -15 247 180 986 187 109 7 chr15 43629403 43629686 -57750835 + Charlie4a DNA MER1_type 16 327 -181 3112 262 89 25 chr15 43629709 43631395 -57749126 + L1MEc LINE L1 37 1913 -4483 1551 270 33 5 chr15 43631408 43632049 -57748472 + L1MEc LINE L1 2598 3256 -2959 1259 227 23 132 chr15 43632056 43632571 -57747950 + MLT1E LTR MaLR 1 459 -134 290 266 89 103 chr15 43632586 43632800 -57747721 - L2 LINE L2 -802 2512 2302 659 300 66 53 chr15 43634081 43634615 -57745906 + L2 LINE L2 2781 3311 -2 27 0 0 0 chr15 43634708 43634735 -57745786 + AT_rich Low_complexity Low_complexity 1 27 0 199 208 75 0 chr15 43635466 43635519 -57745002 + L2 LINE L2 3205 3261 -11 1194 205 108 55 chr15 43636826 43637299 -57743222 - MLT1D LTR MaLR 0 505 8 200 310 60 20 chr15 43637305 43637405 -57743116 + MIR SINE MIR 85 188 -74 230 250 0 0 chr15 43638231 43638275 -57742246 + L2 LINE L2 3252 3295 -18 204 250 0 0 chr15 43638299 43638343 -57742178 + L2 LINE L2 3219 3262 -10 2036 127 138 5 chr15 43638631 43639009 -57741512 + MSTA LTR MaLR 1 428 0 3951 157 17 39 chr15 43639148 43639870 -57740651 - L1MA9 LINE L1 0 6312 5609 1853 163 0 13 chr15 43639870 43640171 -57740350 - AluSx SINE Alu -15 297 1 3951 157 17 39 chr15 43640171 43640270 -57740251 - L1MA9 LINE L1 -703 5609 5509 207 258 23 109 chr15 43641000 43641128 -57739393 + MIR SINE MIR 65 181 -81 243 103 0 0 chr15 43641306 43641345 -57739176 + (TG)n Simple_repeat Simple_repeat 2 40 0 738 199 0 7 chr15 43642258 43642404 -57738117 - MER97c DNA MER1_type? -911 179 35 429 109 0 0 chr15 43642442 43642506 -57738015 + (TG)n Simple_repeat Simple_repeat 2 65 0 277 319 52 26 chr15 43642750 43642866 -57737655 - L2 LINE L2 -2 3311 3193 413 248 204 8 chr15 43643129 43643379 -57737142 + MER113 DNA MER1_type? 187 485 -36 276 30 0 0 chr15 43645042 43645075 -57735446 + (TC)n Simple_repeat Simple_repeat 1 33 0 * 387 0 0 0 chr15 43645074 43645117 -57735404 + (CA)n Simple_repeat Simple_repeat 1 43 0 234 227 30 15 chr15 43645117 43645183 -57735338 + GA-rich Low_complexity Low_complexity 1 67 0 213 304 27 80 chr15 43645437 43645549 -57734972 - MIR SINE MIR -81 127 22 483 263 32 13 chr15 43648111 43648267 -57732254 + MLT1I LTR MaLR 244 402 -7 468 286 141 5 chr15 43648367 43648566 -57731955 - MIR SINE MIR -9 253 28 2410 113 0 24 chr15 43651875 43652248 -57728273 - THE1B LTR MaLR 0 364 1 1703 190 37 0 chr15 43653005 43653300 -57727221 - AluJo SINE Alu -6 306 1 191 441 38 25 chr15 43653305 43653625 -57726896 + L2 LINE L2 2554 2877 -437 344 346 71 82 chr15 43653986 43654266 -57726255 + L2 LINE L2 2977 3253 -19 247 286 116 0 chr15 43655514 43655626 -57724895 - MER117 DNA MER1_type -43 154 30 376 282 8 89 chr15 43656034 43656282 -57724239 - L2 LINE L2 -9 3304 3077 183 253 247 34 chr15 43660081 43660227 -57720294 - L2 LINE L2 -2 3311 3135 226 333 0 0 chr15 43660553 43660634 -57719887 + (TATATG)n Simple_repeat Simple_repeat 4 84 0 245 259 76 68 chr15 43660636 43660872 -57719649 - L1ME4a LINE L1 -158 5963 5726 23 68 0 0 chr15 43660996 43661040 -57719481 + AT_rich Low_complexity Low_complexity 1 44 0 373 319 64 19 chr15 43661117 43661274 -57719247 - L1ME4a LINE L1 -1227 4919 4756 226 226 66 80 chr15 43661527 43661664 -57718857 - L1MC/D LINE L1 -1898 5910 5776 456 297 48 37 chr15 43661781 43662081 -57718440 - L2 LINE L2 -254 3018 2719 1095 242 80 47 chr15 43662083 43662533 -57717988 + MLT1C LTR MaLR 1 465 -2 254 286 10 82 chr15 43662572 43662670 -57717851 - L2 LINE L2 -8 3305 3215 2320 92 0 0 chr15 43662800 43663094 -57717427 - AluSx SINE Alu -18 294 1 346 282 84 14 chr15 43663259 43663401 -57717120 + L2 LINE L2 3147 3298 -15 677 308 21 39 chr15 43663441 43663508 -57717013 + L1ME3A LINE L1 5132 5199 -963 2151 110 0 3 chr15 43663508 43663790 -57716731 + AluSg SINE Alu 3 283 -27 677 308 21 39 chr15 43663790 43664234 -57716287 + L1ME3A LINE L1 5199 5635 -527 469 288 21 30 chr15 43664363 43664599 -57715922 + L1ME3A LINE L1 5718 5951 -219 463 316 165 5 chr15 43666757 43666975 -57713546 - MIR SINE MIR -8 254 2 441 0 0 0 chr15 43667884 43667933 -57712588 + (TA)n Simple_repeat Simple_repeat 1 49 0 270 0 0 0 chr15 43667943 43667973 -57712548 + (CA)n Simple_repeat Simple_repeat 2 31 0 307 357 83 10 chr15 43672176 43672369 -57708152 - MIR SINE MIR -12 250 45 36 0 0 0 chr15 43673527 43673563 -57706958 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr15 43673628 43673651 -57706870 + AT_rich Low_complexity Low_complexity 1 23 0 226 365 37 19 chr15 43673721 43673828 -57706693 - MER5A DNA MER1_type -15 174 66 228 35 0 0 chr15 43674995 43675024 -57705497 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 270 56 0 0 chr15 43676832 43676868 -57703653 + (CA)n Simple_repeat Simple_repeat 1 36 0 214 276 13 40 chr15 43678348 43678424 -57702097 + MIR SINE MIR 29 102 -106 387 279 65 10 chr15 43678612 43678813 -57701708 + L1MC4 LINE L1 7692 7903 -139 305 231 7 84 chr15 43678853 43678996 -57701525 + L1MC4 LINE L1 7908 8039 -3 372 22 0 0 chr15 43679730 43679775 -57700746 + (CA)n Simple_repeat Simple_repeat 2 46 0 189 235 0 0 chr15 43681710 43681744 -57698777 + MIR SINE MIR 214 247 -15 186 103 0 0 chr15 43681749 43681778 -57698743 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 707 268 93 5 chr15 43681869 43682074 -57698447 + MIR SINE MIR 7 229 -33 690 244 99 0 chr15 43682888 43683060 -57697461 + MER5A DNA MER1_type 1 189 0 2186 153 3 12 chr15 43683216 43683556 -57696965 + MER1B DNA MER1_type 1 337 0 402 383 18 6 chr15 43684502 43684669 -57695852 - MIR3 SINE MIR -38 170 2 272 299 16 110 chr15 43685330 43685457 -57695064 + MER91C DNA MER1_type 24 138 -2 30 0 0 0 chr15 43686407 43686437 -57694084 + AT_rich Low_complexity Low_complexity 1 30 0 1427 258 71 112 chr15 43687396 43688646 -57691875 + L2 LINE L2 2118 3313 0 198 71 0 0 chr15 43690518 43690546 -57689975 + (TG)n Simple_repeat Simple_repeat 2 29 0 1816 176 87 0 chr15 43691540 43691886 -57688635 - Tigger3b DNA MER2_type 0 1232 857 1273 109 15 10 chr15 43691884 43692085 -57688436 - Tigger3b DNA MER2_type -736 495 294 * 1157 99 0 13 chr15 43692085 43692237 -57688284 + AluSq/x SINE Alu 1 150 -163 1500 197 20 0 chr15 43692279 43692579 -57687942 - Tigger3b DNA MER2_type -925 306 1 302 309 63 16 chr15 43694549 43694675 -57685846 + L2 LINE L2 3182 3313 0 2551 53 0 0 chr15 43694846 43695147 -57685374 + AluY SINE Alu 1 301 -10 246 393 29 21 chr15 43695499 43695639 -57684882 + L2 LINE L2 3088 3228 -44 595 276 12 6 chr15 43695916 43696086 -57684435 - LTR33 LTR ERVL -4 517 347 386 266 65 49 chr15 43696185 43696369 -57684152 - LTR33 LTR ERVL -303 218 32 215 216 0 20 chr15 43698620 43698671 -57681850 + CT-rich Low_complexity Low_complexity 5 54 0 184 374 30 20 chr15 43698795 43698894 -57681627 + L3 LINE CR1 1476 1575 -2 196 50 0 50 chr15 43699015 43699055 -57681466 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2313 84 0 7 chr15 43699883 43700179 -57680342 - AluSg SINE Alu -16 294 1 536 231 94 6 chr15 43701757 43701917 -57678604 - MLT1J LTR MaLR -251 260 87 1077 188 50 0 chr15 43701941 43702180 -57678341 - Tigger2 DNA MER2_type -12 2706 2456 * 1822 117 22 6 chr15 43702179 43702495 -57678026 - Tigger2 DNA MER2_type -118 2600 2280 414 91 0 104 chr15 43702493 43702570 -57677951 - Tigger2 DNA MER2_type -2649 69 1 * 798 275 18 18 chr15 43703905 43704134 -57676387 + MIR SINE MIR 34 262 0 248 74 481 0 chr15 43705070 43705124 -57675397 + MADE1 DNA Mariner 1 80 0 183 100 0 0 chr15 43706094 43706124 -57674397 + (ATG)n Simple_repeat Simple_repeat 3 32 0 1885 127 34 17 chr15 43707334 43707626 -57672895 - AluSx SINE Alu -15 297 1 23 33 0 0 chr15 43707669 43707699 -57672822 + AT_rich Low_complexity Low_complexity 1 30 0 242 138 52 0 chr15 43708211 43708269 -57672252 + A-rich Low_complexity Low_complexity 6 66 0 690 239 46 46 chr15 43708353 43708592 -57671929 - MIR SINE MIR -15 247 9 180 373 45 0 chr15 43711397 43711464 -57669057 + L2 LINE L2 3239 3308 -5 186 71 0 0 chr15 43712550 43712578 -57667943 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1947 85 8 0 chr15 43712580 43712828 -57667693 - AluSc SINE Alu -21 288 39 228 35 0 0 chr15 43713188 43713217 -57667304 + (TG)n Simple_repeat Simple_repeat 2 30 0 228 344 68 47 chr15 43713901 43714093 -57666428 - L2 LINE L2 -210 3062 2867 197 167 67 67 chr15 43714236 43714296 -57666225 - L2 LINE L2 -81 3232 3173 471 309 58 70 chr15 43716058 43716317 -57664204 + L2 LINE L2 3012 3267 -5 313 310 66 71 chr15 43716343 43716376 -57664145 + MIR3 SINE MIR 4 36 -172 2417 118 22 0 chr15 43716376 43716732 -57663789 + THE1B LTR MaLR 1 364 0 313 310 66 71 chr15 43716732 43716895 -57663626 + MIR3 SINE MIR 36 199 -9 21 0 0 0 chr15 43717235 43717256 -57663265 + AT_rich Low_complexity Low_complexity 1 21 0 208 373 0 0 chr15 43717556 43717623 -57662898 - L2 LINE L2 -23 3290 3224 189 348 27 45 chr15 43719420 43719532 -57660989 - MIR SINE MIR -62 146 37 201 195 0 0 chr15 43721860 43721901 -57658620 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 243 0 0 0 chr15 43724817 43724844 -57655677 + (TG)n Simple_repeat Simple_repeat 2 28 0 660 309 48 35 chr15 43725031 43725429 -57655092 + L1ME4a LINE L1 5524 5926 -195 243 203 0 0 chr15 43725608 43725667 -57654854 + (TG)n Simple_repeat Simple_repeat 2 60 0 297 0 0 0 chr15 43725669 43725702 -57654819 + (CA)n Simple_repeat Simple_repeat 2 34 0 789 101 0 0 chr15 43725924 43726063 -57654458 + (TA)n Simple_repeat Simple_repeat 1 139 0 1978 116 11 11 chr15 43726063 43726347 -57654174 - AluSx SINE Alu -28 284 1 208 337 56 0 chr15 43727054 43727143 -57653378 + L3 LINE CR1 1074 1167 -410 544 302 74 21 chr15 43727157 43727399 -57653122 - MIR SINE MIR -6 256 2 475 281 79 37 chr15 43728712 43728876 -57651645 - MER5A DNA MER1_type -12 177 7 243 224 0 0 chr15 43729460 43729518 -57651003 - L1ME4a LINE L1 -199 5922 5865 180 318 0 0 chr15 43729618 43729662 -57650859 - L2 LINE L2 -25 3247 3204 316 331 69 0 chr15 43730056 43730201 -57650320 + MIR SINE MIR 73 227 -35 266 349 18 0 chr15 43731217 43731326 -57649195 + MIR3 SINE MIR 93 203 -5 467 310 37 29 chr15 43732363 43732608 -57647913 + L1ME1 LINE L1 1 247 -6612 1972 245 76 32 chr15 43733139 43733783 -57646738 + L1ME1 LINE L1 1206 1898 -5061 1388 194 148 17 chr15 43733783 43734196 -57646325 + MLT1C LTR MaLR 1 467 0 1972 245 76 32 chr15 43734196 43734688 -57645833 + L1ME1 LINE L1 1898 2367 -4592 25 75 0 0 chr15 43734703 43734756 -57645765 + AT_rich Low_complexity Low_complexity 1 53 0 28 61 0 0 chr15 43734872 43734921 -57645600 + AT_rich Low_complexity Low_complexity 1 49 0 2421 229 71 27 chr15 43735092 43736459 -57644062 + L1ME1 LINE L1 5433 6936 -41 268 258 93 0 chr15 43737446 43737543 -57642978 + MIR SINE MIR 49 154 -108 803 193 57 70 chr15 43737557 43737777 -57642744 + MER46C DNA MER2_type 2 218 -120 1242 209 154 138 chr15 43737777 43738669 -57641852 + LTR1B LTR ERV1 1 1020 0 400 272 9 0 chr15 43738676 43738790 -57641731 + MER46C DNA MER2_type 222 336 -2 261 235 13 180 chr15 43739191 43739352 -57641169 + MIR SINE MIR 74 208 0 471 340 46 5 chr15 43739787 43739981 -57640540 + MIR SINE MIR 57 258 -4 404 344 113 31 chr15 43740584 43740974 -57639547 + L2 LINE L2 2892 3313 0 186 143 0 0 chr15 43740974 43741009 -57639512 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 325 296 89 17 chr15 43741019 43741310 -57639211 + L1ME LINE L1 5301 5612 -558 264 83 0 117 chr15 43741326 43741386 -57639135 - MADE1 DNA Mariner -27 53 1 307 349 59 20 chr15 43741432 43741584 -57638937 + L1ME LINE L1 5695 5852 -310 180 0 0 0 chr15 43741633 43741653 -57638868 + (CATTA)n Simple_repeat Simple_repeat 1 20 0 180 135 0 0 chr15 43742012 43742049 -57638472 + (TTA)n Simple_repeat Simple_repeat 3 39 0 2211 102 0 3 chr15 43742922 43743217 -57637304 + AluSx SINE Alu 1 294 -18 203 59 0 29 chr15 43744964 43744998 -57635523 + (TG)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr15 43745443 43745466 -57635055 + AT_rich Low_complexity Low_complexity 1 23 0 221 241 19 0 chr15 43745774 43745828 -57634693 + (CA)n Simple_repeat Simple_repeat 1 55 0 31 0 0 0 chr15 43745910 43745941 -57634580 + AT_rich Low_complexity Low_complexity 1 31 0 243 342 105 0 chr15 43745955 43746069 -57634452 - L2 LINE L2 0 3313 3188 27 0 0 0 chr15 43746090 43746117 -57634404 + AT_rich Low_complexity Low_complexity 1 27 0 255 339 139 9 chr15 43747220 43747335 -57633186 + MIR SINE MIR 31 160 -102 2082 124 0 0 chr15 43748597 43748887 -57631634 + AluY SINE Alu 17 306 -5 198 302 0 16 chr15 43749827 43749890 -57630631 + MIR3 SINE MIR 147 208 0 615 314 88 7 chr15 43751171 43751425 -57629096 - MIR SINE MIR 0 262 10 189 283 33 33 chr15 43752284 43752344 -57628177 - MER5A DNA MER1_type -64 125 66 2386 96 0 0 chr15 43752344 43752645 -57627876 - AluSx SINE Alu -11 301 1 585 200 67 7 chr15 43753837 43753972 -57626549 - L2 LINE L2 0 3313 3171 610 274 86 65 chr15 43754558 43754985 -57625536 - L2 LINE L2 -134 3179 2736 232 254 16 0 chr15 43755004 43755067 -57625454 - MIR SINE MIR -58 150 87 328 292 42 17 chr15 43756198 43756318 -57624203 - L2 LINE L2 0 3313 3191 366 322 38 44 chr15 43756342 43756525 -57623996 + MER5A DNA MER1_type 8 189 0 194 259 58 101 chr15 43757245 43757368 -57623153 + L2 LINE L2 3181 3299 -14 2035 123 0 0 chr15 43757368 43757644 -57622877 + AluSq SINE Alu 25 300 -13 194 259 58 101 chr15 43757644 43757659 -57622862 + L2 LINE L2 3299 3313 0 198 250 19 19 chr15 43758089 43758141 -57622380 + L3 LINE CR1 1524 1575 -2 421 282 80 31 chr15 43758903 43759066 -57621455 - MIR SINE MIR 0 262 92 715 209 99 6 chr15 43760777 43760949 -57619572 - MER58A DNA MER1_type -3 221 34 1134 149 27 40 chr15 43762047 43762269 -57618252 + MER20 DNA MER1_type 1 219 0 364 307 39 0 chr15 43762921 43763048 -57617473 - L2 LINE L2 -1371 1943 1812 302 219 114 18 chr15 43763052 43763166 -57617355 - MLT1H1 LTR MaLR -2 553 429 1531 193 47 99 chr15 43763182 43763272 -57617249 + MLT1C LTR MaLR 6 99 -368 3883 49 0 0 chr15 43763272 43763744 -57616777 + L1PA6 LINE L1 5681 6152 -2 1531 193 47 99 chr15 43763744 43764140 -57616381 + MLT1C LTR MaLR 99 467 0 458 226 70 75 chr15 43764140 43764190 -57616331 - MLT1H1 LTR MaLR -131 411 362 1299 212 34 69 chr15 43764190 43764568 -57615953 - MLT1A1 LTR MaLR 0 365 1 458 226 70 75 chr15 43764568 43764814 -57615707 - MLT1H1 LTR MaLR -180 362 129 191 317 31 114 chr15 43764827 43765152 -57615369 - L2 LINE L2 -1738 1576 1279 2456 77 0 6 chr15 43766326 43766639 -57613882 + AluY SINE Alu 1 311 0 2544 148 39 2 chr15 43766820 43767233 -57613288 - MSTA LTR MaLR 0 428 1 356 328 25 102 chr15 43767844 43768088 -57612433 - L2 LINE L2 -91 3181 2957 3080 188 21 20 chr15 43768373 43769071 -57611450 - L1MA7 LINE L1 -2092 4054 3356 * 5745 167 51 14 chr15 43769070 43771048 -57609473 + L1MA7 LINE L1 4067 6236 -55 193 57 57 0 chr15 43771048 43771083 -57609438 + (TA)n Simple_repeat Simple_repeat 1 37 0 5745 167 51 14 chr15 43771083 43771142 -57609379 + L1MA7 LINE L1 6236 6291 0 21 36 0 0 chr15 43771142 43771170 -57609351 + AT_rich Low_complexity Low_complexity 1 28 0 216 345 23 23 chr15 43771785 43771872 -57608649 + MIR3 SINE MIR 101 187 -21 277 310 64 70 chr15 43772193 43772380 -57608141 + MER5A DNA MER1_type 3 188 -1 207 0 0 0 chr15 43773734 43773757 -57606764 + (CAA)n Simple_repeat Simple_repeat 2 24 0 366 91 0 0 chr15 43774280 43774335 -57606186 + (GA)n Simple_repeat Simple_repeat 2 56 0 314 319 42 28 chr15 43776757 43776901 -57603620 + MIR3 SINE MIR 6 151 -57 1884 93 0 56 chr15 43778070 43778339 -57602182 - AluY SINE Alu -57 254 1 1276 235 75 8 chr15 43778343 43778705 -57601816 - MLT1F1 LTR MaLR 0 567 182 2120 215 54 57 chr15 43778765 43779431 -57601090 - MER21B LTR ERV1 -122 741 78 884 204 0 6 chr15 43779805 43779972 -57600549 - MLT1F1 LTR MaLR -372 170 5 356 348 82 11 chr15 43780632 43780816 -57599705 - MIR3 SINE MIR -10 198 2 432 104 0 0 chr15 43784475 43784542 -57595979 + (CA)n Simple_repeat Simple_repeat 2 68 0 396 261 213 46 chr15 43784636 43784965 -57595556 + L1ME4a LINE L1 5736 6119 -2 181 211 118 26 chr15 43785947 43786023 -57594498 + L2 LINE L2 3230 3312 -1 28 0 0 0 chr15 43786083 43786111 -57594410 + AT_rich Low_complexity Low_complexity 1 28 0 472 333 25 10 chr15 43786661 43786865 -57593656 - L2 LINE L2 -3 3310 3104 2196 52 39 52 chr15 43786971 43787277 -57593244 - AluY SINE Alu -9 302 1 630 264 24 6 chr15 43788081 43788248 -57592273 + MIR SINE MIR 29 198 -64 181 216 0 39 chr15 43788299 43788350 -57592171 - L2 LINE L2 -1 3312 3264 21 36 0 0 chr15 43788506 43788534 -57591987 + AT_rich Low_complexity Low_complexity 1 28 0 1048 149 40 0 chr15 43788542 43788743 -57591778 - MER2 DNA MER2_type -135 210 2 2230 112 0 20 chr15 43789495 43789800 -57590721 - AluSc SINE Alu -10 299 1 599 230 113 31 chr15 43790967 43791189 -57589332 + MIR SINE MIR 23 262 0 211 179 90 60 chr15 43791414 43791481 -57589040 + MIR SINE MIR 83 151 -111 263 256 49 0 chr15 43792137 43792219 -57588302 + MIR SINE MIR 120 205 -57 776 158 60 27 chr15 43792860 43793043 -57587478 + MER5A DNA MER1_type 1 189 0 266 309 67 47 chr15 43793380 43793529 -57586992 - L3 LINE CR1 -475 1102 951 261 83 0 0 chr15 43794024 43794060 -57586461 + (TA)n Simple_repeat Simple_repeat 2 37 0 185 277 48 24 chr15 43794876 43794959 -57585562 + MIR SINE MIR 39 123 -139 369 372 33 28 chr15 43795022 43795237 -57585284 + MIR SINE MIR 47 262 0 566 305 42 8 chr15 43795880 43796119 -57584402 - LTR16A1 LTR ERVL -2 455 209 502 220 53 15 chr15 43796643 43796775 -57583746 - MIR SINE MIR -10 252 116 304 376 44 17 chr15 43796839 43797020 -57583501 + L3 LINE CR1 248 433 -1144 364 336 83 43 chr15 43797165 43797613 -57582908 + L2 LINE L2 2642 3095 -177 246 356 95 30 chr15 43797772 43798067 -57582454 + L3 LINE CR1 667 980 -597 1118 141 61 50 chr15 43798785 43798983 -57581538 + AluJb SINE Alu 1 200 -112 228 35 0 0 chr15 43799023 43799052 -57581469 + (TAA)n Simple_repeat Simple_repeat 2 30 0 237 211 101 18 chr15 43799070 43799179 -57581342 - Charlie7 DNA MER1_type -55 2557 2440 233 276 31 10 chr15 43799173 43799271 -57581250 - Charlie7 DNA MER1_type -2508 104 5 * 473 313 72 10 chr15 43800735 43800930 -57579591 + MIR SINE MIR 46 252 -10 5220 243 104 43 chr15 43800948 43802762 -57577759 - L1MD2 LINE L1 -3 6750 5047 4450 158 45 9 chr15 43802762 43803622 -57576899 - L1MA4A LINE L1 0 6303 5413 5220 243 104 43 chr15 43803622 43804719 -57575802 - L1MD2 LINE L1 -1706 5047 4018 1042 199 168 65 chr15 43804719 43805177 -57575344 + MLT1D LTR MaLR 1 505 0 5220 243 104 43 chr15 43805177 43807470 -57573051 - L1MD2 LINE L1 -2735 4018 1118 247 252 41 88 chr15 43807670 43807817 -57572704 - L1MD2 LINE L1 -5912 628 489 635 286 50 40 chr15 43808023 43808490 -57572031 - L1MDa LINE L1 -5555 985 122 731 253 135 32 chr15 43808493 43808872 -57571649 - MER74B LTR ERVL -139 483 66 557 234 42 24 chr15 43808883 43809050 -57571471 + MER21B LTR ERV1 581 750 -113 24 0 0 0 chr15 43809287 43809311 -57571210 + AT_rich Low_complexity Low_complexity 1 24 0 386 242 16 36 chr15 43809422 43809552 -57570969 + L1ME1 LINE L1 5991 6139 -56 4022 161 13 10 chr15 43812515 43813302 -57567219 + L1MC3 LINE L1 6802 7590 -195 815 170 72 5 chr15 43813306 43813500 -57567021 + L1MC2 LINE L1 6137 6343 -1 231 103 0 0 chr15 43814729 43814768 -57565753 + (TC)n Simple_repeat Simple_repeat 2 40 0 353 257 0 0 chr15 43815318 43815388 -57565133 + L2 LINE L2 3240 3309 -4 393 293 24 0 chr15 43815573 43815696 -57564825 - MIR3 SINE MIR -1 207 82 188 313 76 83 chr15 43815844 43815988 -57564533 - L2 LINE L2 -86 3186 3044 213 269 0 0 chr15 43816274 43816352 -57564169 + (CAGAGA)n Simple_repeat Simple_repeat 4 81 0 361 301 187 0 chr15 43816796 43816919 -57563602 - MER5A DNA MER1_type -6 183 38 2303 129 13 3 chr15 43816953 43817332 -57563189 - L1MA5 LINE L1 -6 6294 5912 217 174 22 43 chr15 43817383 43817429 -57563092 + MER5B DNA MER1_type 35 79 -99 1034 204 121 44 chr15 43817781 43818120 -57562401 + MLT1A1 LTR MaLR 1 365 0 4308 170 30 7 chr15 43818847 43819669 -57560852 - MER21B LTR ERV1 -22 841 1 4165 142 115 21 chr15 43821478 43821809 -57558712 + MER6 DNA MER2_type 1 300 -565 243 0 0 0 chr15 43821809 43821836 -57558685 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 4165 142 115 21 chr15 43821836 43822295 -57558226 + MER6 DNA MER2_type 300 865 0 234 217 50 0 chr15 43822296 43822356 -57558165 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 968 179 0 0 chr15 43822825 43822981 -57557540 + FAM SINE Alu 1 156 -19 252 200 0 0 chr15 43822981 43823036 -57557485 + GA-rich Low_complexity Low_complexity 2 56 0 308 269 41 8 chr15 43823372 43823544 -57556977 - MIR SINE MIR -4 258 45 205 321 57 70 chr15 43823936 43824151 -57556370 - MIR SINE MIR -41 167 3 1678 185 21 3 chr15 43824459 43824745 -57555776 + AluJo SINE Alu 3 293 -19 411 284 18 0 chr15 43827237 43827346 -57553175 - L2 LINE L2 -8 3264 3154 2148 143 36 52 chr15 43827553 43827841 -57552680 - Tigger2a DNA MER2_type -2274 434 154 2211 194 7 21 chr15 43827841 43828273 -57552248 + MSTB LTR MaLR 1 426 0 2148 143 36 52 chr15 43828273 43828425 -57552096 - Tigger2a DNA MER2_type -2554 154 1 550 250 39 50 chr15 43828524 43828704 -57551817 - MER5B DNA MER1_type 0 178 1 211 256 0 0 chr15 43829041 43829084 -57551437 + MIR SINE MIR 110 152 -110 3250 201 41 2 chr15 43829100 43829728 -57550793 - MER82 DNA MER2_type 0 653 1 21 0 0 0 chr15 43829819 43829840 -57550681 + AT_rich Low_complexity Low_complexity 1 21 0 2548 65 3 0 chr15 43831046 43831355 -57549166 - AluY SINE Alu 0 311 2 298 206 0 14 chr15 43831746 43831819 -57548702 - HsTC2 DNA Tc2 -1820 78 7 216 184 0 0 chr15 43832145 43832194 -57548327 + (CA)n Simple_repeat Simple_repeat 1 49 0 420 328 152 37 chr15 43832194 43833039 -57547482 + L1MC4a LINE L1 4349 5290 -856 244 290 171 0 chr15 43833049 43833225 -57547296 + L1MC4a LINE L1 5323 5528 -2280 256 271 43 87 chr15 43833597 43833804 -57546717 + L1MC4a LINE L1 5714 5911 -1897 279 0 0 0 chr15 43836174 43836205 -57544316 + (CA)n Simple_repeat Simple_repeat 1 31 0 362 343 34 27 chr15 43837146 43837292 -57543229 - MIR3 SINE MIR -46 162 16 210 254 0 36 chr15 43837661 43837716 -57542805 - L2 LINE L2 -16 3297 3245 225 316 0 20 chr15 43838627 43838725 -57541796 + T-rich Low_complexity Low_complexity 4 99 0 2324 108 0 0 chr15 43838846 43839142 -57541379 + AluSx SINE Alu 3 298 -14 1400 261 19 5 chr15 43840194 43840565 -57539956 + MLT1G LTR MaLR 214 589 -1 1563 175 144 3 chr15 43840832 43841152 -57539369 - MLT1A1 LTR MaLR 0 365 1 356 234 101 62 chr15 43842263 43842490 -57538031 - L1MC4 LINE L1 0 8042 7807 336 321 82 15 chr15 43842630 43842764 -57537757 + L2 LINE L2 3127 3269 -3 230 296 174 31 chr15 43843270 43843466 -57537055 + L2 LINE L2 2872 3095 -177 246 264 19 47 chr15 43845281 43845387 -57535134 - MIR SINE MIR 0 262 160 645 233 119 0 chr15 43845388 43845564 -57534957 - MIR SINE MIR -64 198 2 1736 186 55 42 chr15 43848529 43848911 -57531610 + MLT1B LTR MaLR 1 387 -3 806 253 118 53 chr15 43849105 43849595 -57530926 + LTR33A LTR ERVL 2 523 0 322 260 31 10 chr15 43849734 43849830 -57530691 - MLT1J LTR MaLR -297 214 117 1171 247 117 43 chr15 43850022 43850186 -57530335 - MLT1G1 LTR MaLR 0 595 445 2183 145 18 0 chr15 43850186 43850517 -57530004 - MER1B DNA MER1_type 0 337 1 1171 247 117 43 chr15 43850517 43850906 -57529615 - MLT1G1 LTR MaLR -150 445 1 275 283 22 22 chr15 43850939 43851031 -57529490 + MIR3 SINE MIR 82 173 -35 306 302 5 116 chr15 43851453 43851642 -57528879 - MIR3 SINE MIR -10 198 31 442 286 34 27 chr15 43851775 43851922 -57528599 - MIR SINE MIR -50 212 65 193 329 0 0 chr15 43852018 43852091 -57528430 - MIR SINE MIR -2 260 188 265 264 166 43 chr15 43852131 43852294 -57528227 - MIR SINE MIR -62 200 18 424 291 6 85 chr15 43852520 43852685 -57527836 + MIR3 SINE MIR 23 174 -34 195 69 0 0 chr15 43852903 43852932 -57527589 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4705 148 19 19 chr15 43853983 43854933 -57525588 + L1MB1 LINE L1 5219 6168 0 198 103 0 0 chr15 43854937 43854966 -57525555 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 2316 78 0 0 chr15 43855488 43855784 -57524737 - AluY SINE Alu -15 296 1 1911 163 9 9 chr15 43856377 43856726 -57523795 - L1PB4 LINE L1 -1 6155 5807 209 233 0 17 chr15 43857549 43857609 -57522912 + (TAA)n Simple_repeat Simple_repeat 1 59 0 22 56 0 0 chr15 43857678 43857714 -57522807 + AT_rich Low_complexity Low_complexity 1 36 0 492 260 8 16 chr15 43857830 43857953 -57522568 + L2 LINE L2 3192 3313 0 194 207 0 207 chr15 43858160 43858271 -57522250 - L2 LINE L2 0 3272 3185 251 323 51 41 chr15 43860015 43860102 -57520419 + L3 LINE CR1 639 724 -853 1884 179 3 0 chr15 43860102 43860404 -57520117 + AluJo SINE Alu 1 303 -9 251 323 51 41 chr15 43860404 43860511 -57520010 + L3 LINE CR1 724 835 -742 655 320 111 53 chr15 43860532 43861457 -57519064 - L2 LINE L2 -25 3247 2154 231 341 213 27 chr15 43861454 43861782 -57518739 + L3 LINE CR1 913 1301 -276 * 305 339 47 0 chr15 43861815 43861942 -57518579 + L3 LINE CR1 1441 1573 -4 298 315 115 0 chr15 43861996 43862126 -57518395 + MIR3 SINE MIR 32 176 -32 297 239 44 18 chr15 43864113 43864226 -57516295 - L1MD3 LINE L1 -10 7985 7870 1247 194 84 0 chr15 43864230 43864539 -57515982 - L1MC4a LINE L1 -246 7562 7228 201 322 230 6 chr15 43864793 43864967 -57515554 + MIR SINE MIR 36 248 -14 503 358 201 16 chr15 43865059 43865442 -57515079 - L2 LINE L2 0 3313 2860 1842 174 0 82 chr15 43866318 43866743 -57513778 + MLT1B LTR MaLR 1 390 0 517 226 28 66 chr15 43866866 43866970 -57513551 + MER5B DNA MER1_type 1 97 -81 1544 180 10 33 chr15 43866970 43867276 -57513245 + AluJo SINE Alu 1 299 -13 517 226 28 66 chr15 43867276 43867352 -57513169 + MER5B DNA MER1_type 97 174 -4 774 261 0 5 chr15 43867370 43867558 -57512963 + MER5A DNA MER1_type 2 188 -1 311 121 17 0 chr15 43868815 43868873 -57511648 + (CA)n Simple_repeat Simple_repeat 2 60 0 302 313 31 31 chr15 43869984 43870112 -57510409 - MIR SINE MIR -109 153 26 386 303 56 43 chr15 43871203 43871365 -57509156 + MIR3 SINE MIR 32 195 -13 444 296 53 0 chr15 43871986 43872138 -57508383 - MER117 DNA MER1_type -10 187 28 527 316 64 11 chr15 43872581 43872768 -57507753 - MIR SINE MIR -9 253 57 2414 209 96 105 chr15 43873047 43873599 -57506922 + L1MC1 LINE L1 4060 4615 -1556 1480 173 0 39 chr15 43873599 43873853 -57506668 + AluJo SINE Alu 39 282 -30 191 36 36 0 chr15 43873858 43873886 -57506635 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 2414 209 96 105 chr15 43873886 43873962 -57506559 + L1MC1 LINE L1 4619 4694 -1477 668 173 0 0 chr15 43873962 43874066 -57506455 + FLAM_A SINE Alu 2 105 -37 2414 209 96 105 chr15 43874066 43874603 -57505918 + L1MC1 LINE L1 4694 5325 -846 2048 156 13 0 chr15 43874603 43874976 -57505545 + L1MA8 LINE L1 5914 6291 0 2414 209 96 105 chr15 43874976 43875011 -57505510 + L1MC1 LINE L1 5325 5359 -812 4630 142 22 4 chr15 43875516 43876319 -57504202 + L1MC1 LINE L1 5319 6136 -197 825 188 0 0 chr15 43877470 43877603 -57502918 - FLAM_C SINE Alu -10 133 1 21 0 0 0 chr15 43877650 43877671 -57502850 + AT_rich Low_complexity Low_complexity 1 21 0 1834 137 27 27 chr15 43877754 43878046 -57502475 + AluJb SINE Alu 1 292 -20 197 222 241 0 chr15 43878345 43878399 -57502122 - L2 LINE L2 -3 3310 3244 291 93 0 0 chr15 43880014 43880057 -57500464 + (TC)n Simple_repeat Simple_repeat 1 43 0 285 313 96 30 chr15 43882115 43882264 -57498257 + MIR SINE MIR 23 145 -63 1036 288 96 17 chr15 43882283 43882752 -57497769 + LTR33 LTR ERVL 14 519 -2 206 222 0 0 chr15 43882849 43882894 -57497627 + (TGAA)n Simple_repeat Simple_repeat 3 47 0 24 0 0 0 chr15 43883481 43883505 -57497016 + AT_rich Low_complexity Low_complexity 1 24 0 207 69 0 0 chr15 43883897 43883926 -57496595 + (CA)n Simple_repeat Simple_repeat 2 30 0 2796 0 0 3 chr15 43884345 43884649 -57495872 + AluYa5 SINE Alu 1 303 -8 240 338 123 32 chr15 43885659 43885813 -57494708 + MIR SINE MIR 20 187 -75 672 309 15 0 chr15 43887279 43887483 -57493038 - MIR SINE MIR -10 252 46 688 242 65 32 chr15 43887563 43887749 -57492772 + MIR SINE MIR 50 241 -21 216 212 242 0 chr15 43888016 43888082 -57492439 - L2 LINE L2 -1 3271 3190 339 291 120 8 chr15 43888168 43888285 -57492236 - L2 LINE L2 -4 3268 3139 21 0 0 0 chr15 43890653 43890674 -57489847 + GC_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr15 43890827 43890847 -57489674 + (CTG)n Simple_repeat Simple_repeat 3 22 0 252 0 0 0 chr15 43891085 43891113 -57489408 + (TG)n Simple_repeat Simple_repeat 1 28 0 423 0 0 0 chr15 43891150 43891197 -57489324 + (TG)n Simple_repeat Simple_repeat 2 48 0 325 294 172 41 chr15 43891546 43891913 -57488608 + L1M2 LINE L1 837 1251 -5598 222 37 0 0 chr15 43893575 43893602 -57486919 + (T)n Simple_repeat Simple_repeat 1 27 0 680 355 16 0 chr15 43896108 43896353 -57484168 - MIR SINE MIR -1 261 13 361 291 36 129 chr15 43897575 43897963 -57482558 - L2 LINE L2 0 3272 2921 187 129 0 0 chr15 43898049 43898080 -57482441 - L2 LINE L2 -3 3310 3280 209 250 162 0 chr15 43898545 43898613 -57481908 + L2 LINE L2 3191 3269 -3 400 254 9 18 chr15 43899516 43899630 -57480891 - MIR SINE MIR 0 262 150 708 225 54 59 chr15 43899636 43899858 -57480663 - MIR SINE MIR -2 260 40 * 782 268 25 29 chr15 43899855 43900094 -57480427 + MIR SINE MIR 14 251 -11 221 255 0 0 chr15 43900121 43900168 -57480353 - MIR SINE MIR -215 47 1 405 333 45 11 chr15 43900560 43900737 -57479784 - MER5A DNA MER1_type 0 189 7 203 250 31 16 chr15 43900755 43900819 -57479702 - MER5A DNA MER1_type 0 189 125 208 322 33 25 chr15 43901439 43901560 -57478961 + MIR SINE MIR 16 137 -71 614 246 98 41 chr15 43901756 43901908 -57478613 - MIR SINE MIR 0 262 89 2194 182 80 31 chr15 43901908 43902386 -57478135 - MLT1D LTR MaLR -4 501 1 614 246 98 41 chr15 43902386 43902477 -57478044 - MIR SINE MIR -173 89 5 187 344 16 0 chr15 43903308 43903372 -57477149 + L3 LINE CR1 1512 1576 -1 219 36 0 0 chr15 43903386 43903414 -57477107 + (TTTAG)n Simple_repeat Simple_repeat 3 30 0 28 0 0 0 chr15 43903420 43903448 -57477073 + AT_rich Low_complexity Low_complexity 1 28 0 277 266 0 13 chr15 43905133 43905212 -57475309 + (TA)n Simple_repeat Simple_repeat 1 78 0 370 281 98 30 chr15 43905267 43905470 -57475051 + MIR SINE MIR 38 254 -8 927 258 166 26 chr15 43905480 43905871 -57474650 - MLT1L LTR MaLR -7 608 163 368 298 40 0 chr15 43906974 43907098 -57473423 + MIR SINE MIR 102 230 -32 204 125 0 0 chr15 43907551 43907583 -57472938 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 279 153 136 0 chr15 43907722 43907781 -57472740 + MER45 DNA AcHobo 60 126 -914 * 329 231 15 0 chr15 43907772 43907837 -57472684 + MER45 DNA AcHobo 1516 1581 0 235 230 81 58 chr15 43907932 43908019 -57472502 + MIR3 SINE MIR 82 170 -38 220 200 36 0 chr15 43909396 43909451 -57471070 + (TTTAA)n Simple_repeat Simple_repeat 3 59 0 340 275 143 68 chr15 43910851 43911341 -57469180 - L1ME4a LINE L1 -188 5933 5415 3148 60 2 2 chr15 43911385 43911783 -57468738 - L1PA8A LINE L1 -28 6103 5706 1292 246 92 41 chr15 43912055 43912514 -57468007 - MLT1G1 LTR MaLR -29 566 85 369 291 171 0 chr15 43913210 43913385 -57467136 - MIR SINE MIR 0 262 58 2348 94 0 3 chr15 43913572 43913879 -57466642 + AluSc SINE Alu 1 306 -3 256 258 333 8 chr15 43914509 43914629 -57465892 + MIR SINE MIR 13 171 -91 2352 91 10 0 chr15 43914768 43915075 -57465446 + AluSp SINE Alu 1 310 -3 400 282 113 52 chr15 43915166 43915414 -57465107 - L2 LINE L2 -86 3186 2924 25 31 0 0 chr15 43916586 43916618 -57463903 + AT_rich Low_complexity Low_complexity 1 32 0 398 343 7 29 chr15 43917371 43917508 -57463013 - L2 LINE L2 0 3272 3139 555 303 37 6 chr15 43918210 43918372 -57462149 - MIR3 SINE MIR -7 201 35 541 256 106 40 chr15 43918567 43918794 -57461727 - MIR SINE MIR -14 248 7 421 162 27 0 chr15 43919199 43919273 -57461248 - L1MD2 LINE L1 -19 6340 6265 21 0 0 0 chr15 43920318 43920339 -57460182 + AT_rich Low_complexity Low_complexity 1 21 0 317 292 159 0 chr15 43921674 43921787 -57458734 - L2 LINE L2 -1 3271 3141 396 373 40 8 chr15 43922001 43922248 -57458273 - L2 LINE L2 -445 2869 2615 2167 132 3 0 chr15 43922404 43922714 -57457807 - AluSq SINE Alu -2 311 1 518 361 51 5 chr15 43922717 43922933 -57457588 - MIR SINE MIR -15 247 22 292 271 178 8 chr15 43923696 43923825 -57456696 - MIR3 SINE MIR -48 160 10 337 322 92 57 chr15 43925244 43925558 -57454963 - L2 LINE L2 -337 2977 2653 503 329 149 53 chr15 43925562 43926060 -57454461 - L2 LINE L2 -1248 2066 1617 2136 123 7 0 chr15 43926060 43926352 -57454169 + AluSx SINE Alu 1 294 -18 503 329 149 53 chr15 43926352 43926949 -57453572 - L2 LINE L2 -1697 1617 866 818 206 0 0 chr15 43927444 43927575 -57452946 + FLAM_C SINE Alu 2 132 -11 940 282 114 37 chr15 43927628 43928273 -57452248 - L1ME LINE L1 -4664 1597 817 2259 105 20 0 chr15 43928273 43928577 -57451944 - AluSg SINE Alu 0 310 1 940 282 114 37 chr15 43928577 43928891 -57451630 - L1ME LINE L1 -5444 817 529 279 174 0 43 chr15 43929145 43929237 -57451284 + (TATAA)n Simple_repeat Simple_repeat 4 91 0 598 310 24 39 chr15 43929732 43929987 -57450534 - MIR SINE MIR -10 252 2 22 0 0 0 chr15 43930227 43930249 -57450272 + AT_rich Low_complexity Low_complexity 1 22 0 450 281 41 14 chr15 43931232 43931378 -57449143 - MIR SINE MIR -93 169 20 508 190 131 7 chr15 43931936 43932073 -57448448 - L1MA10 LINE L1 -4 6330 6177 554 343 11 0 chr15 43932133 43932308 -57448213 + MIR3 SINE MIR 21 197 -11 187 267 99 50 chr15 43935306 43935407 -57445114 + MIR SINE MIR 85 190 -72 180 200 0 0 chr15 43938710 43938750 -57441771 + (CA)n Simple_repeat Simple_repeat 1 40 0 22 70 0 0 chr15 43940252 43940295 -57440226 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr15 43943773 43943795 -57436726 + AT_rich Low_complexity Low_complexity 1 22 0 384 22 0 0 chr15 43945681 43945726 -57434795 + (TG)n Simple_repeat Simple_repeat 2 46 0 194 0 39 0 chr15 43946195 43946221 -57434300 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr15 43947593 43947616 -57432905 + AT_rich Low_complexity Low_complexity 1 23 0 2071 104 0 21 chr15 43948709 43948989 -57431532 - AluSx SINE Alu -38 274 1 241 264 148 71 chr15 43949678 43949833 -57430688 + MIR3 SINE MIR 39 205 -3 467 246 42 0 chr15 43950490 43950608 -57429913 + MER3 DNA MER1_type 1 123 -86 23 33 0 0 chr15 43952364 43952394 -57428127 + AT_rich Low_complexity Low_complexity 1 30 0 3433 131 46 26 chr15 43953537 43954080 -57426441 + MER41C LTR ERV1 1 554 0 763 286 82 30 chr15 43955660 43956012 -57424509 + MLT1L LTR MaLR 66 551 -64 2030 125 4 0 chr15 43956012 43956322 -57424199 - AluSq SINE Alu 0 312 2 763 286 82 30 chr15 43956322 43956389 -57424132 + MLT1L LTR MaLR 551 613 -2 649 218 45 62 chr15 43956508 43956687 -57423834 + MER5B DNA MER1_type 3 178 0 958 225 53 125 chr15 43956731 43956765 -57423756 - MLT1H LTR MaLR 0 549 514 1946 228 81 65 chr15 43956765 43957127 -57423394 - MLT1E3 LTR MaLR 0 624 246 2148 113 0 32 chr15 43957127 43957437 -57423084 - AluSx SINE Alu -12 300 1 1946 228 81 65 chr15 43957437 43957688 -57422833 - MLT1E3 LTR MaLR -378 246 1 958 225 53 125 chr15 43957688 43958184 -57422337 - MLT1H LTR MaLR -35 514 17 244 250 0 42 chr15 43959117 43959189 -57421332 - L2 LINE L2 0 3313 3245 332 311 144 27 chr15 43960767 43960989 -57419532 + L2 LINE L2 3001 3248 -65 384 71 0 0 chr15 43961247 43961303 -57419218 + (TG)n Simple_repeat Simple_repeat 2 57 0 220 271 29 14 chr15 43961306 43961376 -57419145 + G-rich Low_complexity Low_complexity 3 73 0 181 73 24 24 chr15 43961579 43961620 -57418901 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 24 32 0 0 chr15 43961806 43961837 -57418684 + AT_rich Low_complexity Low_complexity 1 31 0 1620 142 7 71 chr15 43962382 43962514 -57418007 + AluJo SINE Alu 6 110 -202 2467 58 0 3 chr15 43962514 43962809 -57417712 + AluY SINE Alu 2 295 -16 1620 142 7 71 chr15 43962809 43962971 -57417550 + AluJo SINE Alu 110 281 -31 190 213 21 21 chr15 43963911 43963958 -57416563 + MIR SINE MIR 26 72 -136 368 274 112 76 chr15 43964062 43964285 -57416236 + MIR SINE MIR 29 259 -3 22 0 0 0 chr15 43964286 43964308 -57416213 + AT_rich Low_complexity Low_complexity 1 22 0 253 281 124 0 chr15 43966220 43966309 -57414212 + L3b LINE CR1 1328 1427 -156 753 260 29 45 chr15 43966583 43966825 -57413696 - MIR SINE MIR -8 254 17 24 0 0 0 chr15 43967261 43967285 -57413236 + AT_rich Low_complexity Low_complexity 1 24 0 359 289 116 16 chr15 43967428 43967549 -57412972 - MER94 DNA DNA -1 133 1 799 275 199 8 chr15 43968793 43969164 -57411357 - MLT1H1 LTR MaLR -113 442 1 845 196 18 31 chr15 43969796 43969959 -57410562 + FRAM SINE Alu 1 161 -5 234 91 0 0 chr15 43970079 43970112 -57410409 + (TA)n Simple_repeat Simple_repeat 1 33 0 790 140 21 166 chr15 43970854 43971047 -57409474 + AluJb SINE Alu 131 295 -17 213 213 21 0 chr15 43971108 43971155 -57409366 + (TG)n Simple_repeat Simple_repeat 1 48 0 210 143 0 0 chr15 43971156 43971191 -57409330 + (TA)n Simple_repeat Simple_repeat 1 35 0 261 254 79 97 chr15 43971448 43971562 -57408959 - L2 LINE L2 -25 3247 3136 2270 251 70 12 chr15 43971842 43972515 -57408006 + L1ME1 LINE L1 5449 6160 -6 216 0 0 0 chr15 43972529 43972553 -57407968 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2363 91 0 10 chr15 43973236 43973544 -57406977 - AluSx SINE Alu -7 305 1 23 0 0 0 chr15 43973570 43973593 -57406928 + AT_rich Low_complexity Low_complexity 1 23 0 2178 117 0 0 chr15 43973599 43973909 -57406612 + AluSx SINE Alu 1 310 0 520 289 140 62 chr15 43973996 43974853 -57405668 - L2 LINE L2 -76 3237 2309 209 298 58 117 chr15 43975622 43975793 -57404728 + MER5A DNA MER1_type 13 173 -16 * 364 205 295 0 chr15 43975684 43975796 -57404725 - MER5A DNA MER1_type -19 170 26 724 199 0 7 chr15 43976168 43976304 -57404217 + MIR SINE MIR 62 196 -66 686 242 26 46 chr15 43976934 43977128 -57403393 - MIR SINE MIR -53 209 20 1172 161 16 0 chr15 43977234 43977420 -57403101 - MER5A DNA MER1_type 0 189 1 872 181 16 66 chr15 43977429 43977570 -57402951 + MER5B DNA MER1_type 2 134 -44 1634 203 0 20 chr15 43977570 43977876 -57402645 + AluJo SINE Alu 1 300 -12 872 181 16 66 chr15 43977876 43977916 -57402605 + MER5B DNA MER1_type 134 174 -4 22 0 0 0 chr15 43979983 43980005 -57400516 + AT_rich Low_complexity Low_complexity 1 22 0 276 235 20 31 chr15 43980065 43980163 -57400358 - HAL1b LINE L1 -330 1018 922 1413 121 14 10 chr15 43980177 43980384 -57400137 + AluSx SINE Alu 3 210 -102 30 0 0 0 chr15 43980408 43980438 -57400083 + AT_rich Low_complexity Low_complexity 1 30 0 226 271 17 0 chr15 43980441 43980500 -57400021 - HAL1b LINE L1 -433 915 856 1264 206 120 35 chr15 43980553 43980952 -57399569 - Zaphod DNA AcHobo -9 4022 3590 259 216 82 0 chr15 43980943 43981040 -57399481 - Zaphod DNA AcHobo -3041 990 886 * 2404 93 0 0 chr15 43981308 43981618 -57398903 - AluSg SINE Alu 0 310 1 760 243 75 6 chr15 43981669 43981842 -57398679 + MIR SINE MIR 2 186 -76 35 54 0 0 chr15 43981915 43981971 -57398550 + AT_rich Low_complexity Low_complexity 1 56 0 227 321 12 12 chr15 43982279 43982363 -57398158 - MLT1K LTR MaLR -34 554 471 573 317 38 56 chr15 43982390 43982677 -57397844 - MLT1K LTR MaLR -215 373 92 2087 137 0 3 chr15 43983298 43983598 -57396923 + AluSx SINE Alu 1 299 -13 1586 244 113 4 chr15 43983680 43984130 -57396391 - MLT1F LTR MaLR 0 542 44 365 225 12 0 chr15 43985496 43985576 -57394945 - MLT1F LTR MaLR -338 204 124 375 247 11 21 chr15 43985647 43985740 -57394781 + MIR3 SINE MIR 67 158 -50 702 268 73 19 chr15 43986442 43986794 -57393727 + LTR16A1 LTR ERVL 12 453 -4 294 363 50 25 chr15 43987002 43987203 -57393318 + MIR3 SINE MIR 3 208 0 199 324 99 9 chr15 43987653 43987764 -57392757 - MIR SINE MIR -46 216 96 291 213 205 25 chr15 43987964 43988086 -57392435 + MER103 DNA DNA 16 159 -7 261 0 0 0 chr15 43989107 43989136 -57391385 + (TG)n Simple_repeat Simple_repeat 2 30 0 1112 278 64 33 chr15 43989958 43990347 -57390174 - MLT1I LTR MaLR -3 406 6 219 139 0 0 chr15 43992259 43992295 -57388226 + (TTC)n Simple_repeat Simple_repeat 1 36 0 2638 171 98 36 chr15 43992357 43992890 -57387631 + MLT1F1 LTR MaLR 2 567 0 432 0 0 0 chr15 43993926 43993974 -57386547 + (CA)n Simple_repeat Simple_repeat 2 49 0 24 0 0 0 chr15 43996151 43996175 -57384346 + AT_rich Low_complexity Low_complexity 1 24 0 2041 182 28 8 chr15 43996777 43997135 -57383386 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr15 43998128 43998149 -57382372 + AT_rich Low_complexity Low_complexity 1 21 0 3079 222 66 29 chr15 43998173 43998813 -57381708 - L1ME2 LINE L1 -63 6101 5399 2597 159 21 23 chr15 43998813 43999240 -57381281 + MSTB LTR MaLR 1 426 0 3079 222 66 29 chr15 43999240 43999532 -57380989 - L1ME2 LINE L1 -765 5399 5119 21 0 0 0 chr15 43999600 43999621 -57380900 + AT_rich Low_complexity Low_complexity 1 21 0 649 206 129 46 chr15 43999709 43999903 -57380618 + MER63A DNA MER1_type 1 210 0 21 36 0 0 chr15 44000988 44001016 -57379505 + AT_rich Low_complexity Low_complexity 1 28 0 1142 133 61 10 chr15 44001046 44001242 -57379279 - MER2 DNA MER2_type -139 206 1 326 267 36 61 chr15 44001326 44001491 -57379030 - L1MEd LINE L1 -5957 162 2 1324 263 91 21 chr15 44002046 44002521 -57378000 - LTR33A LTR ERVL -3 520 13 268 239 100 30 chr15 44002602 44002931 -57377590 + L1ME4a LINE L1 5731 6119 -2 950 275 107 42 chr15 44003215 44003597 -57376924 + MLT1I LTR MaLR 3 409 0 662 216 11 13 chr15 44004017 44004210 -57376311 + L1MC4a LINE L1 6445 6601 -1207 243 0 0 0 chr15 44004221 44004248 -57376273 + (CA)n Simple_repeat Simple_repeat 2 28 0 2595 197 42 76 chr15 44004292 44004660 -57375861 + L1MC4 LINE L1 6866 7196 -846 6561 110 11 1 chr15 44004660 44006081 -57374440 + L1PA10 LINE L1 4728 6165 -3 2595 197 42 76 chr15 44006081 44006472 -57374049 + L1MC4 LINE L1 7196 7599 -443 362 192 41 0 chr15 44006469 44006542 -57373979 + L1MC4 LINE L1 7966 8041 -1 * 198 298 0 18 chr15 44007651 44007708 -57372813 + L2 LINE L2 3243 3298 -15 664 301 99 18 chr15 44008147 44008529 -57371992 + LTR16C LTR ERVL 79 491 0 2326 132 35 24 chr15 44008690 44009061 -57371460 - THE1C LTR MaLR 0 375 1 409 334 123 20 chr15 44009337 44009744 -57370777 + L1PA3 LINE L1 5432 5880 -275 * 2231 247 64 35 chr15 44009382 44010034 -57370487 + L1ME1 LINE L1 5491 6161 -5 952 151 0 0 chr15 44010529 44010668 -57369853 + FLAM_C SINE Alu 1 139 -4 1109 263 76 66 chr15 44010668 44011181 -57369340 - MER115 DNA AcHobo -76 617 100 1590 234 33 70 chr15 44013583 44014037 -57366484 + MLT1H LTR MaLR 1 437 -112 1807 184 57 25 chr15 44015978 44016331 -57364190 + MLT1A1 LTR MaLR 1 364 -1 834 156 6 11 chr15 44019906 44020086 -57360435 + GA-rich Low_complexity Low_complexity 1 179 0 2443 81 0 3 chr15 44021173 44021480 -57359041 + AluY SINE Alu 1 306 -5 1232 123 0 0 chr15 44021920 44022090 -57358431 + FRAM SINE Alu 1 167 -9 21 0 0 0 chr15 44022091 44022112 -57358409 + AT_rich Low_complexity Low_complexity 1 21 0 469 308 190 4 chr15 44022456 44022719 -57357802 - L3 LINE CR1 -5 1572 1261 1378 218 99 26 chr15 44022856 44023200 -57357321 + MLT1A2 LTR MaLR 2 370 -4 1234 227 28 13 chr15 44023221 44023538 -57356983 + MER33 DNA MER1_type 1 322 -2 756 340 96 52 chr15 44023807 44024725 -57355796 - L2 LINE L2 -1 3312 2344 2005 136 3 10 chr15 44025159 44025474 -57355047 + AluSx SINE Alu 1 312 0 2602 71 0 0 chr15 44025841 44026152 -57354369 + AluY SINE Alu 1 311 0 474 328 18 93 chr15 44027383 44027834 -57352687 + LTR67 LTR ERVL 5 421 -136 1139 267 77 45 chr15 44027892 44028656 -57351865 - HAL1 LINE L1 -832 1675 887 1718 168 0 7 chr15 44029589 44029875 -57350646 + AluJo SINE Alu 1 284 -28 27 29 0 0 chr15 44029877 44029911 -57350610 + AT_rich Low_complexity Low_complexity 1 34 0 256 310 138 0 chr15 44030946 44031033 -57349488 + L2 LINE L2 3162 3260 -12 323 245 119 46 chr15 44031274 44031425 -57349096 - MIR SINE MIR -74 188 27 215 240 202 23 chr15 44032917 44033046 -57347475 - MIR SINE MIR -37 225 74 21 0 0 0 chr15 44033086 44033107 -57347414 + AT_rich Low_complexity Low_complexity 1 21 0 2086 181 44 92 chr15 44033180 44033692 -57346829 + MLT2B1 LTR ERVL 1 536 16 180 0 0 0 chr15 44033692 44033712 -57346809 + (CA)n Simple_repeat Simple_repeat 1 20 0 * 228 35 0 0 chr15 44033711 44033740 -57346781 + (GA)n Simple_repeat Simple_repeat 2 30 0 2086 181 44 92 chr15 44033712 44033773 -57346748 + MLT2B1 LTR ERVL 535 520 0 246 213 43 0 chr15 44033785 44033832 -57346689 - L2 LINE L2 -36 3277 3229 492 277 62 0 chr15 44034126 44034296 -57346225 + MIR SINE MIR 50 228 -34 341 303 65 26 chr15 44035496 44035651 -57344870 + MLT1L LTR MaLR 113 273 -342 273 242 81 32 chr15 44035656 44035780 -57344741 + MLT1L LTR MaLR 484 613 -2 534 209 209 0 chr15 44035923 44036071 -57344450 - MER5A DNA MER1_type 0 189 11 653 285 51 95 chr15 44036166 44036598 -57343923 + MLT1K LTR MaLR 176 588 0 272 305 0 11 chr15 44036652 44036747 -57343774 + MER58C DNA MER1_type 52 145 -70 532 202 22 13 chr15 44036753 44036982 -57343539 + GA-rich Low_complexity Low_complexity 1 231 0 911 214 12 0 chr15 44037012 44037185 -57343336 - MER58B DNA MER1_type 0 341 167 1845 127 83 50 chr15 44037559 44037922 -57342599 + THE1C LTR MaLR 1 375 0 2212 118 0 7 chr15 44038362 44038667 -57341854 - AluSp SINE Alu -10 303 1 1370 230 98 62 chr15 44038668 44039116 -57341405 + MLT1D LTR MaLR 42 505 0 2354 184 23 28 chr15 44039313 44039743 -57340778 - MSTB1 LTR MaLR -4 428 1 186 225 0 0 chr15 44039890 44039930 -57340591 + L3b LINE CR1 1542 1581 -2 1105 251 111 36 chr15 44040049 44040552 -57339969 + L1ME4a LINE L1 5570 6110 -11 21 57 0 0 chr15 44040552 44040587 -57339934 + AT_rich Low_complexity Low_complexity 1 35 0 7141 70 17 9 chr15 44040757 44042400 -57338121 - L1PA7 LINE L1 -1 6153 4506 239 245 0 0 chr15 44042411 44042464 -57338057 + MIR SINE MIR 81 133 -75 1119 234 22 0 chr15 44043044 44043271 -57337250 + MLT1G LTR MaLR 354 585 -5 1927 207 13 55 chr15 44043373 44043754 -57336767 + MLT1A1 LTR MaLR 1 365 0 191 274 226 0 chr15 44044526 44044632 -57335889 + MIR SINE MIR 58 187 -75 1010 273 70 64 chr15 44045337 44045791 -57334730 - LTR16A1 LTR ERVL 0 457 1 516 297 115 38 chr15 44045820 44046029 -57334492 + MIR SINE MIR 13 237 -25 429 290 5 82 chr15 44047147 44047354 -57333167 + MIR3 SINE MIR 7 197 -11 318 267 11 11 chr15 44047442 44047532 -57332989 - MIR3 SINE MIR 0 208 119 222 37 0 0 chr15 44047844 44047871 -57332650 + (CA)n Simple_repeat Simple_repeat 2 28 0 358 263 172 68 chr15 44048043 44048420 -57332101 + L1MC2 LINE L1 5255 5669 -452 1360 181 166 21 chr15 44048600 44048758 -57331763 - MLT1B LTR MaLR -4 386 252 276 30 0 0 chr15 44048758 44048791 -57331730 + (CA)n Simple_repeat Simple_repeat 2 34 0 1360 181 166 21 chr15 44048791 44048969 -57331552 - MLT1B LTR MaLR -138 252 1 196 297 31 0 chr15 44048995 44049059 -57331462 - L2 LINE L2 0 3272 3207 3480 166 44 14 chr15 44049168 44049830 -57330691 + L1MC2 LINE L1 5661 6342 -2 496 341 45 100 chr15 44053955 44054747 -57325774 - L2 LINE L2 -778 2536 1788 2094 169 0 3 chr15 44054937 44055274 -57325247 + MER1B DNA MER1_type 2 337 0 289 315 62 0 chr15 44055526 44055656 -57324865 - MER102a DNA MER1_type -19 311 174 1502 230 3 0 chr15 44057012 44057303 -57323218 + AluJo SINE Alu 10 301 -11 273 318 47 62 chr15 44057421 44057613 -57322908 + MER5A DNA MER1_type 1 189 0 269 140 18 0 chr15 44058166 44058223 -57322298 + CT-rich Low_complexity Low_complexity 2 59 0 222 62 0 0 chr15 44058223 44058255 -57322266 + (CA)n Simple_repeat Simple_repeat 1 32 0 24 32 0 0 chr15 44059160 44059191 -57321330 + AT_rich Low_complexity Low_complexity 1 31 0 1673 224 143 27 chr15 44059769 44060425 -57320096 + MER50 LTR ERV1 1 732 -2 306 0 0 0 chr15 44061071 44061105 -57319416 + (CA)n Simple_repeat Simple_repeat 1 34 0 839 244 119 35 chr15 44061282 44061300 -57319221 + L1ME3A LINE L1 5735 5750 -420 1993 129 34 45 chr15 44061300 44061679 -57318842 - THE1C LTR MaLR 0 375 1 839 244 119 35 chr15 44061679 44062037 -57318484 + L1ME3A LINE L1 5750 6143 -27 429 253 32 26 chr15 44062604 44062767 -57317754 + MIR3 SINE MIR 10 174 -34 2320 116 3 18 chr15 44062836 44063216 -57317305 + L1MA2 LINE L1 5931 6304 0 189 0 0 0 chr15 44064157 44064178 -57316343 + (A)n Simple_repeat Simple_repeat 1 21 0 496 187 19 0 chr15 44064599 44064706 -57315815 - MER57A LTR ERV1 0 403 295 2044 140 0 0 chr15 44065132 44065460 -57315061 - MER47A DNA MER2_type 0 366 39 4684 86 12 21 chr15 44065471 44066025 -57314496 - L1P LINE L1 -2469 3677 3130 2496 80 0 6 chr15 44066025 44066337 -57314184 - AluY SINE Alu -1 310 1 4684 86 12 21 chr15 44066337 44066526 -57313995 - L1P LINE L1 -3016 3130 2941 6970 83 1 1 chr15 44066526 44067525 -57312996 + L1P LINE L1 3700 4698 -1448 3088 48 20 0 chr15 44067525 44067916 -57312605 + L1PA7 LINE L1 5754 6154 0 1065 197 47 0 chr15 44067924 44068178 -57312343 + L1MD3 LINE L1 7730 7995 0 508 192 0 210 chr15 44068466 44068695 -57311826 + MIR SINE MIR 46 226 -36 222 105 0 0 chr15 44068707 44068745 -57311776 + (ATG)n Simple_repeat Simple_repeat 3 40 0 25 31 0 0 chr15 44070207 44070239 -57310282 + AT_rich Low_complexity Low_complexity 1 32 0 28 0 0 0 chr15 44070757 44070785 -57309736 + AT_rich Low_complexity Low_complexity 1 28 0 563 287 66 76 chr15 44072582 44072909 -57307612 - MLT1L LTR MaLR 0 615 293 2171 126 0 3 chr15 44072909 44073203 -57307318 - AluSc SINE Alu -16 293 1 563 287 66 76 chr15 44073203 44073363 -57307158 - MLT1L LTR MaLR -322 293 133 299 313 80 30 chr15 44074335 44074699 -57305822 + L1MEd LINE L1 2 383 -5736 462 277 9 0 chr15 44074916 44075028 -57305493 - MER81 DNA DNA 0 114 2 251 257 248 10 chr15 44075047 44075148 -57305373 + L1MEd LINE L1 502 626 -5493 502 278 72 14 chr15 44075425 44075634 -57304887 - L1M4 LINE L1 -3616 2766 2546 2022 141 41 39 chr15 44075659 44076022 -57304499 - THE1B LTR MaLR 0 364 1 10953 90 16 3 chr15 44076026 44077576 -57302945 - THE1B-int LTR MaLR -11 1569 1 2106 129 35 59 chr15 44077576 44077949 -57302572 - THE1B LTR MaLR 0 364 1 733 313 77 20 chr15 44078032 44078383 -57302138 - LTR16B LTR ERVL -93 371 1 358 280 73 31 chr15 44078413 44078633 -57301888 - L1M4 LINE L1 -3863 2519 2287 2215 121 3 0 chr15 44078725 44079030 -57301491 + AluSx SINE Alu 1 306 -6 342 200 103 113 chr15 44079305 44079356 -57301165 + L1ME LINE L1 4637 4687 -1459 2298 121 0 0 chr15 44079356 44079661 -57300860 + AluSx SINE Alu 2 306 -6 342 200 103 113 chr15 44079661 44079804 -57300717 + L1ME LINE L1 4687 4829 -1317 559 155 20 20 chr15 44079806 44079954 -57300567 + CT-rich Low_complexity Low_complexity 3 150 0 315 0 0 0 chr15 44079954 44079989 -57300532 + (CA)n Simple_repeat Simple_repeat 2 36 0 228 300 30 70 chr15 44079989 44080389 -57300132 + L1ME LINE L1 4850 5233 -913 365 94 0 0 chr15 44080444 44080497 -57300024 + MADE1 DNA Mariner 3 55 -25 459 316 57 18 chr15 44080546 44080985 -57299536 + L1ME LINE L1 5352 5822 -348 1292 197 6 15 chr15 44081027 44081537 -57298984 + L1MB8 LINE L1 5636 6178 0 184 170 19 75 chr15 44082877 44082930 -57297591 + L2 LINE L2 2596 2645 -669 365 209 0 0 chr15 44083625 44083692 -57296829 - MER103 DNA DNA -45 121 55 223 284 45 0 chr15 44083807 44083874 -57296647 - MIR SINE MIR -134 128 59 198 314 131 7 chr15 44085245 44085382 -57295139 - MIR SINE MIR 0 262 109 358 304 108 19 chr15 44085476 44085634 -57294887 + MER5A DNA MER1_type 18 189 0 1284 88 47 5 chr15 44086138 44086330 -57294191 - MER30 DNA MER1_type -30 200 1 331 160 0 0 chr15 44086472 44086522 -57293999 + MER5A DNA MER1_type 26 75 -114 2166 123 3 19 chr15 44086523 44086943 -57293578 + AluSx SINE Alu 1 415 0 2421 166 35 39 chr15 44087546 44087709 -57292812 + L1MB7 LINE L1 5619 5781 -403 1730 169 115 3 chr15 44087709 44088065 -57292456 - MSTD LTR MaLR 0 396 1 2421 166 35 39 chr15 44088065 44088397 -57292124 + L1MB7 LINE L1 5781 6114 -70 216 0 0 0 chr15 44088397 44088421 -57292100 + (CA)n Simple_repeat Simple_repeat 2 25 0 2421 166 35 39 chr15 44088421 44088492 -57292029 + L1MB7 LINE L1 6114 6184 0 731 212 73 0 chr15 44088995 44089160 -57291361 - MER45A DNA AcHobo -1 177 1 396 0 0 0 chr15 44089175 44089219 -57291302 + (TG)n Simple_repeat Simple_repeat 2 45 0 329 0 24 0 chr15 44089224 44089265 -57291256 + (GA)n Simple_repeat Simple_repeat 1 42 0 282 73 0 0 chr15 44089831 44089872 -57290649 + (TG)n Simple_repeat Simple_repeat 2 42 0 696 288 27 23 chr15 44090019 44090238 -57290283 + MIR SINE MIR 2 221 -41 599 0 14 0 chr15 44093351 44093422 -57287099 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 2577 46 0 0 chr15 44093803 44094107 -57286414 + AluY SINE Alu 1 304 -7 378 216 117 18 chr15 44094567 44094678 -57285843 + MER5C DNA MER1_type 1 122 -202 21 36 0 0 chr15 44094887 44094915 -57285606 + AT_rich Low_complexity Low_complexity 1 28 0 394 324 74 56 chr15 44095405 44095837 -57284684 + LTR16A LTR ERVL 8 447 -3 319 345 0 73 chr15 44095905 44096096 -57284425 - L2 LINE L2 -172 3100 2924 264 303 81 10 chr15 44096106 44096205 -57284316 + L2 LINE L2 2986 3091 -222 443 234 186 21 chr15 44096458 44096603 -57283918 - MER5A DNA MER1_type 0 189 21 30 69 0 0 chr15 44097507 44097565 -57282956 + AT_rich Low_complexity Low_complexity 1 58 0 1012 78 0 0 chr15 44098252 44098381 -57282140 + AluY SINE Alu 180 308 -3 321 227 0 0 chr15 44098705 44098771 -57281750 + MER69 DNA AcHobo 2 67 -110 300 188 0 0 chr15 44098904 44098968 -57281553 + MER69 DNA AcHobo 2383 2446 -80 308 315 253 0 chr15 44099302 44099480 -57281041 - MIR SINE MIR -25 237 15 1142 172 38 0 chr15 44099573 44099782 -57280739 + MER20 DNA MER1_type 1 217 -2 183 80 0 0 chr15 44099920 44099945 -57280576 + (T)n Simple_repeat Simple_repeat 1 25 0 371 303 103 13 chr15 44099973 44100128 -57280393 + MIR3 SINE MIR 13 181 -27 363 105 0 0 chr15 44100847 44100904 -57279617 + (TG)n Simple_repeat Simple_repeat 1 57 0 2266 226 61 5 chr15 44100966 44101593 -57278928 - L1MC4 LINE L1 -143 7899 7238 429 137 0 95 chr15 44101604 44101699 -57278822 + AluJ/FLAM SINE Alu 5 90 -222 440 304 53 37 chr15 44102847 44103169 -57277352 + LTR16C LTR ERVL 84 410 -81 685 272 103 28 chr15 44103556 44103916 -57276605 + L1ME4a LINE L1 5462 5848 -273 285 289 58 16 chr15 44104094 44104215 -57276306 - L1MC4 LINE L1 -143 7899 7774 180 176 0 0 chr15 44104271 44104305 -57276216 + CT-rich Low_complexity Low_complexity 4 37 0 2104 125 51 3 chr15 44104370 44104723 -57275798 + L1MA4 LINE L1 5920 6289 -11 1555 158 28 111 chr15 44107414 44107812 -57272709 - MLT1A1 LTR MaLR 0 365 1 184 320 82 31 chr15 44107812 44107909 -57272612 - L2 LINE L2 -27 3286 3185 226 369 117 0 chr15 44108942 44109045 -57271476 - MIR SINE MIR -64 144 30 460 271 15 23 chr15 44110043 44110176 -57270345 - L2 LINE L2 0 3313 3182 363 89 0 0 chr15 44110176 44110232 -57270289 + (TG)n Simple_repeat Simple_repeat 2 57 0 220 329 0 0 chr15 44110232 44110305 -57270216 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 325 275 74 69 chr15 44110905 44111094 -57269427 - L1ME LINE L1 -357 5764 5575 809 168 10 10 chr15 44111179 44111477 -57269044 + GA-rich Low_complexity Low_complexity 1 298 0 788 113 11 43 chr15 44111477 44111663 -57268858 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 678 263 75 93 chr15 44111770 44112199 -57268322 - L2 LINE L2 -1208 2106 1686 2531 292 59 93 chr15 44112637 44113598 -57266923 - L2 LINE L2 -1637 1677 684 371 216 167 0 chr15 44113598 44113882 -57266639 + FRAM SINE Alu 35 335 0 2531 292 59 93 chr15 44113882 44114269 -57266252 - L2 LINE L2 -2630 684 280 2416 109 0 0 chr15 44114269 44114582 -57265939 + AluSq SINE Alu 1 313 0 2531 292 59 93 chr15 44114582 44114649 -57265872 - L2 LINE L2 -3034 280 212 186 189 0 0 chr15 44114649 44114686 -57265835 + GA-rich Low_complexity Low_complexity 4 40 0 269 297 0 0 chr15 44115314 44115378 -57265143 + L2 LINE L2 3250 3313 0 388 254 105 91 chr15 44115400 44115609 -57264912 + MIR SINE MIR 35 246 -16 297 297 127 0 chr15 44115996 44116114 -57264407 + MIR SINE MIR 122 254 -8 332 312 42 37 chr15 44116138 44116353 -57264168 + L1ME3A LINE L1 3136 3351 -2795 262 224 24 0 chr15 44116763 44116848 -57263673 + GA-rich Low_complexity Low_complexity 1 87 0 1253 300 75 25 chr15 44116877 44117288 -57263233 + L1ME3A LINE L1 4517 4906 -1264 1412 181 55 78 chr15 44117288 44117687 -57262834 + MLT1B LTR MaLR 1 390 0 1253 300 75 25 chr15 44117687 44118636 -57261885 + L1ME3A LINE L1 4906 5940 -230 215 301 14 0 chr15 44118832 44118905 -57261616 + (CATATA)n Simple_repeat Simple_repeat 2 75 0 295 306 0 10 chr15 44120457 44120555 -57259966 + GA-rich Low_complexity Low_complexity 4 100 0 2349 59 21 0 chr15 44120606 44120895 -57259626 + AluY SINE Alu 1 295 -16 267 31 0 0 chr15 44121312 44121344 -57259177 + (CA)n Simple_repeat Simple_repeat 2 33 0 466 287 122 8 chr15 44122082 44122289 -57258232 - MIR SINE MIR -25 237 11 779 235 26 56 chr15 44122297 44122339 -57258182 + MIR SINE MIR 36 78 -184 468 0 0 0 chr15 44122339 44122391 -57258130 + (TA)n Simple_repeat Simple_repeat 1 52 0 779 235 26 56 chr15 44122391 44122582 -57257939 + MIR SINE MIR 78 262 0 438 283 17 23 chr15 44123330 44123507 -57257014 - MLT1K LTR MaLR -35 553 378 379 324 42 0 chr15 44123640 44123782 -57256739 - MLT1K LTR MaLR -410 178 31 341 235 226 0 chr15 44124197 44124312 -57256209 + MIR SINE MIR 92 232 -30 244 245 71 61 chr15 44124493 44124591 -57255930 - MER5A DNA MER1_type -89 100 2 207 139 0 0 chr15 44124622 44124658 -57255863 + (GGAA)n Simple_repeat Simple_repeat 2 37 0 617 63 0 0 chr15 44125144 44125223 -57255298 + MADE1 DNA Mariner 2 80 0 1158 178 19 14 chr15 44125540 44125754 -57254767 + MER20 DNA MER1_type 1 215 -4 489 17 0 0 chr15 44125934 44125992 -57254529 + (TG)n Simple_repeat Simple_repeat 1 58 0 285 29 0 0 chr15 44125991 44126025 -57254496 + (GA)n Simple_repeat Simple_repeat 1 34 0 * 1856 211 31 56 chr15 44126950 44127467 -57253054 - MLT1D LTR MaLR -1 504 1 450 358 55 9 chr15 44128774 44128992 -57251529 - MIR SINE MIR -18 244 17 432 0 0 0 chr15 44129720 44129768 -57250753 + (TG)n Simple_repeat Simple_repeat 1 48 0 5976 108 20 15 chr15 44129900 44131889 -57248632 - L1PA15 LINE L1 0 6165 4167 329 312 26 45 chr15 44132208 44132362 -57248159 - L2 LINE L2 0 3313 3163 339 344 27 38 chr15 44135790 44135973 -57244548 - MIR3 SINE MIR -27 181 1 25 0 0 0 chr15 44135976 44136001 -57244520 + AT_rich Low_complexity Low_complexity 1 25 0 372 213 38 0 chr15 44136475 44136555 -57243966 - MER5A DNA MER1_type -104 85 3 212 336 29 10 chr15 44137057 44137161 -57243360 + L2 LINE L2 3160 3265 -48 223 181 153 14 chr15 44137385 44137457 -57243064 + MIR SINE MIR 180 261 -1 908 165 55 40 chr15 44138109 44138309 -57242212 - MLT1C LTR MaLR -264 203 1 407 284 45 32 chr15 44138991 44139146 -57241375 + L2 LINE L2 2914 3070 -202 2187 109 0 7 chr15 44139274 44139567 -57240954 + AluSx SINE Alu 1 291 -21 481 321 12 6 chr15 44139577 44139745 -57240776 + MIR SINE MIR 60 228 -34 529 327 118 9 chr15 44139845 44140056 -57240465 + MIR SINE MIR 21 254 -8 404 224 0 31 chr15 44140396 44140494 -57240027 - MIR3 SINE MIR -8 200 106 345 309 119 22 chr15 44143124 44143344 -57237177 + MIR SINE MIR 21 260 -2 280 289 0 0 chr15 44143408 44143460 -57237061 + L2 LINE L2 3201 3252 -20 184 316 98 53 chr15 44143629 44143762 -57236759 - L2 LINE L2 -208 3064 2926 691 269 56 32 chr15 44144121 44144370 -57236151 + MIR SINE MIR 8 262 0 541 294 85 44 chr15 44145869 44146029 -57234492 - L1ME4a LINE L1 -47 6074 5922 2066 241 87 22 chr15 44146029 44146617 -57233904 + MLT1E2 LTR MaLR 1 626 0 541 294 85 44 chr15 44146617 44146996 -57233525 - L1ME4a LINE L1 -199 5922 5513 217 288 106 62 chr15 44149535 44149761 -57230760 - L2 LINE L2 -204 3068 2833 393 252 187 32 chr15 44150592 44150747 -57229774 + MER5A DNA MER1_type 10 188 -1 334 302 16 56 chr15 44150910 44151036 -57229485 - MIR SINE MIR -65 197 77 2849 135 73 40 chr15 44151039 44151645 -57228876 - L1 LINE L1 -1596 4550 3925 5099 147 44 6 chr15 44151651 44153112 -57227409 + L1MA4 LINE L1 4601 6131 -169 1870 135 10 20 chr15 44153359 44153675 -57226846 + AluSx SINE Alu 1 312 0 2255 95 3 7 chr15 44154045 44154341 -57226180 + AluSx SINE Alu 4 298 -14 899 134 70 0 chr15 44154906 44155063 -57225458 + L1MA4 LINE L1 6121 6288 -12 2116 138 0 0 chr15 44155197 44155495 -57225026 - AluSx SINE Alu -14 298 1 387 327 58 30 chr15 44155947 44156454 -57224067 + L1ME LINE L1 4289 4816 -1330 405 302 186 41 chr15 44156496 44156597 -57223924 - L3 LINE CR1 -614 963 878 1930 177 35 44 chr15 44156597 44157027 -57223494 - LTR37A LTR ERV1 0 426 1 405 302 186 41 chr15 44157027 44157216 -57223305 - L3 LINE CR1 -699 878 631 437 263 46 53 chr15 44157408 44157560 -57222961 - L2 LINE L2 -1 3271 3121 1338 283 79 6 chr15 44158059 44158656 -57221865 + L1ME LINE L1 5178 5821 -349 311 191 8 24 chr15 44158703 44158829 -57221692 + (TA)n Simple_repeat Simple_repeat 2 125 0 2764 119 51 0 chr15 44158829 44159242 -57221279 - MER57B LTR ERV1 0 434 1 248 0 31 0 chr15 44159242 44159274 -57221247 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 329 235 40 7 chr15 44159736 44159885 -57220636 + (TA)n Simple_repeat Simple_repeat 2 155 0 215 31 31 0 chr15 44159950 44159982 -57220539 + (TG)n Simple_repeat Simple_repeat 2 34 0 2898 109 5 36 chr15 44159996 44160438 -57220083 - L1PB1 LINE L1 0 6151 5724 22 0 0 0 chr15 44161761 44161783 -57218738 + AT_rich Low_complexity Low_complexity 1 22 0 214 158 26 118 chr15 44163861 44163914 -57216607 + MIR3 SINE MIR 108 153 -55 690 200 38 60 chr15 44163914 44164099 -57216422 + MER5A DNA MER1_type 3 183 -6 374 141 28 0 chr15 44164527 44164598 -57215923 + CT-rich Low_complexity Low_complexity 3 75 0 1917 162 13 0 chr15 44164600 44164789 -57215732 - AluJb SINE Alu 0 312 116 270 0 0 0 chr15 44164789 44164819 -57215702 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1917 162 13 0 chr15 44164819 44164937 -57215584 - AluJb SINE Alu -196 116 1 21 0 0 0 chr15 44165440 44165461 -57215060 + AT_rich Low_complexity Low_complexity 1 21 0 299 344 33 8 chr15 44166884 44167006 -57213515 - MIR SINE MIR -65 143 19 1741 149 11 4 chr15 44167802 44168064 -57212457 + AluJb SINE Alu 1 264 -48 348 24 0 0 chr15 44168075 44168116 -57212405 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1002 220 5 5 chr15 44168278 44168464 -57212057 - MER5A DNA MER1_type -3 186 1 234 0 0 0 chr15 44168473 44168499 -57212022 + (T)n Simple_repeat Simple_repeat 1 26 0 499 263 150 19 chr15 44168952 44169112 -57211409 - MER5A DNA MER1_type 0 189 9 267 173 0 0 chr15 44169611 44169663 -57210858 + GA-rich Low_complexity Low_complexity 1 52 0 502 310 95 22 chr15 44170016 44170248 -57210273 - MIR SINE MIR -2 260 12 337 349 35 30 chr15 44170632 44170801 -57209720 + LTR67 LTR ERVL 31 200 -357 2341 101 0 7 chr15 44171803 44172110 -57208411 + AluSg SINE Alu 1 305 -5 197 274 10 88 chr15 44173522 44173624 -57206897 - MIR SINE MIR -25 237 144 398 288 144 0 chr15 44173883 44173994 -57206527 + MER5A DNA MER1_type 63 189 0 274 29 29 0 chr15 44174013 44174048 -57206473 - MLT1I LTR MaLR -3 406 371 22 0 0 0 chr15 44175299 44175321 -57205200 + AT_rich Low_complexity Low_complexity 1 22 0 269 155 17 0 chr15 44175321 44175379 -57205142 + (CA)n Simple_repeat Simple_repeat 2 60 0 230 195 117 13 chr15 44175545 44175622 -57204899 - MIR3 SINE MIR -23 185 101 217 222 101 0 chr15 44176753 44176824 -57203697 + MIR SINE MIR 114 193 -69 243 289 105 0 chr15 44176860 44176936 -57203585 + MIR SINE MIR 178 261 -1 589 258 64 61 chr15 44178050 44178345 -57202176 + LTR16A1 LTR ERVL 158 453 -4 240 320 124 0 chr15 44178456 44178553 -57201968 + L2 LINE L2 3128 3236 -36 236 192 260 0 chr15 44178647 44178720 -57201801 + MIR3 SINE MIR 112 203 -5 231 250 54 0 chr15 44178946 44179002 -57201519 - L2 LINE L2 -6 3307 3249 332 282 130 6 chr15 44179066 44179243 -57201278 - MIR SINE MIR -57 205 2 676 333 18 29 chr15 44180291 44180564 -57199957 - HAL1 LINE L1 -1783 724 455 368 304 95 12 chr15 44180732 44180900 -57199621 - HAL1 LINE L1 -2275 232 51 496 218 122 0 chr15 44181192 44181348 -57199173 + MIR SINE MIR 60 234 -28 185 192 58 19 chr15 44181319 44181371 -57199150 + L2 LINE L2 3251 3304 -9 * 422 318 140 0 chr15 44181886 44182065 -57198456 - L3 LINE CR1 -8 1569 1366 1079 190 25 10 chr15 44182297 44182497 -57198024 + MER20 DNA MER1_type 16 218 -1 214 384 8 24 chr15 44182504 44182629 -57197892 - L2 LINE L2 -226 3046 2924 198 329 138 24 chr15 44182685 44182852 -57197669 - L3 LINE CR1 -252 1325 1140 223 178 0 22 chr15 44184141 44184186 -57196335 + GA-rich Low_complexity Low_complexity 4 47 0 302 333 61 24 chr15 44184474 44184639 -57195882 - MER5B DNA MER1_type -7 171 1 384 292 53 0 chr15 44184757 44184870 -57195651 + MIR SINE MIR 28 146 -62 297 292 142 8 chr15 44186021 44186141 -57194380 + MIR SINE MIR 17 152 -56 250 200 12 118 chr15 44187191 44187276 -57193245 + L2 LINE L2 3235 3310 -3 509 333 157 33 chr15 44188181 44188999 -57191522 + L2 LINE L2 2349 3272 0 969 57 19 13 chr15 44189471 44189629 -57190892 + (TAGA)n Simple_repeat Simple_repeat 4 162 0 2030 198 8 16 chr15 44189984 44190352 -57190169 - MLT1A1 LTR MaLR 0 365 1 196 317 77 39 chr15 44190681 44190785 -57189736 - MIR SINE MIR -109 153 46 192 382 40 13 chr15 44190802 44190878 -57189643 - MIR3 SINE MIR -127 81 4 187 354 31 23 chr15 44192609 44192739 -57187782 - MIR SINE MIR -50 212 82 209 264 0 0 chr15 44194715 44194768 -57185753 - L2 LINE L2 -94 3219 3167 460 335 88 0 chr15 44194816 44194998 -57185523 - MIR SINE MIR -1 261 64 4715 149 16 34 chr15 44195080 44195268 -57185253 + L1MB8 LINE L1 5305 5495 -683 1713 191 0 16 chr15 44195268 44195571 -57184950 + AluJo SINE Alu 1 298 -14 4715 149 16 34 chr15 44195571 44195738 -57184783 + L1MB8 LINE L1 5495 5664 -514 2171 127 49 32 chr15 44195738 44196107 -57184414 + THE1C LTR MaLR 1 375 0 4715 149 16 34 chr15 44196107 44196634 -57183887 + L1MB8 LINE L1 5664 6172 -6 3194 115 44 78 chr15 44197290 44197822 -57182699 - Tigger3(Golem) DNA MER2_type 0 3029 2516 3715 66 0 0 chr15 44197822 44198262 -57182259 - L1PA7 LINE L1 -2 6152 5713 3194 115 44 78 chr15 44198262 44198322 -57182199 - Tigger3(Golem) DNA MER2_type -513 2516 2456 296 196 49 20 chr15 44198330 44198432 -57182089 + Zaphod DNA AcHobo 888 992 -3039 * 1890 186 51 35 chr15 44198429 44198858 -57181663 + Zaphod DNA AcHobo 3596 4031 0 300 351 56 82 chr15 44198904 44199223 -57181298 - L2 LINE L2 -19 3253 2943 206 339 56 44 chr15 44199258 44199509 -57181012 - L2 LINE L2 -468 2846 2593 3682 97 34 2 chr15 44199613 44200110 -57180411 + MER75 DNA T2_type 1 513 -1 617 355 92 28 chr15 44200154 44200580 -57179941 - L3 LINE CR1 -40 1537 1085 451 240 44 74 chr15 44200790 44200993 -57179528 + MIR SINE MIR 39 232 -30 482 118 94 0 chr15 44200997 44201082 -57179439 - MER53 DNA DNA 0 189 97 288 229 12 36 chr15 44201105 44201188 -57179333 + CT-rich Low_complexity Low_complexity 4 84 0 336 303 132 20 chr15 44201318 44201470 -57179051 + MIR SINE MIR 82 250 -12 2248 106 3 0 chr15 44204747 44205040 -57175481 - AluSp SINE Alu -19 294 1 532 297 113 5 chr15 44205662 44205847 -57174674 + MIR SINE MIR 25 229 -33 6662 150 47 3 chr15 44207905 44209229 -57171292 + L1MC1 LINE L1 4964 6332 -1 405 357 143 12 chr15 44210058 44210576 -57169945 - L2 LINE L2 -350 2964 2379 195 42 0 0 chr15 44211208 44211232 -57169289 + (TTG)n Simple_repeat Simple_repeat 3 26 0 396 275 140 42 chr15 44211242 44211478 -57169043 - MIR SINE MIR 0 262 4 263 244 128 12 chr15 44212956 44213042 -57167479 + MIR3 SINE MIR 77 172 -36 497 297 96 17 chr15 44213555 44213794 -57166727 - MIR SINE MIR -3 259 2 1015 275 55 50 chr15 44214172 44214690 -57165831 - MLT1G3 LTR MaLR -13 536 1 297 289 178 0 chr15 44214690 44214825 -57165696 + MIR SINE MIR 90 248 -14 180 0 0 0 chr15 44215368 44215388 -57165133 + (A)n Simple_repeat Simple_repeat 1 20 0 344 258 31 21 chr15 44216198 44216295 -57164226 - MIR SINE MIR -6 256 159 196 274 95 12 chr15 44218260 44218344 -57162177 - MIR SINE MIR -84 178 88 628 333 15 10 chr15 44218423 44218621 -57161900 - MIR SINE MIR -44 218 20 6430 75 0 0 chr15 44219096 44219907 -57160614 + L1PA8 LINE L1 5374 6184 0 336 115 0 0 chr15 44220060 44220112 -57160409 + L1MB1 LINE L1 6116 6167 -1 371 316 101 0 chr15 44220176 44220344 -57160177 + MIR SINE MIR 62 246 -16 228 219 0 0 chr15 44221147 44221188 -57159333 + MLT1I LTR MaLR 369 409 0 4468 154 15 24 chr15 44223560 44223733 -57156788 + L1P LINE L1 3432 3605 -2541 1814 45 0 58 chr15 44223733 44223975 -57156546 + L1PA4 LINE L1 5928 6155 0 4468 154 15 24 chr15 44223975 44224582 -57155939 + L1P LINE L1 3605 4205 -1941 561 220 200 13 chr15 44224686 44224836 -57155685 + MIR SINE MIR 77 254 -8 514 304 160 22 chr15 44225018 44225386 -57155135 + MLT1J2 LTR MaLR 1 419 -31 250 209 34 149 chr15 44225594 44225663 -57154858 + L1M3 LINE L1 4901 4946 -1200 2534 55 0 0 chr15 44225663 44225956 -57154565 - AluSc SINE Alu -16 293 1 250 209 34 149 chr15 44225956 44226034 -57154487 + L1M3 LINE L1 4946 5031 -1115 1917 168 5 45 chr15 44226047 44226422 -57154099 + L1M3 LINE L1 5308 5667 -513 861 268 99 47 chr15 44226948 44227180 -57153341 + MLT1H LTR MaLR 1 220 -329 1979 161 0 0 chr15 44227180 44227471 -57153050 + AluSx SINE Alu 5 295 -17 861 268 99 47 chr15 44227471 44227721 -57152800 + MLT1H LTR MaLR 220 549 0 274 332 37 74 chr15 44227851 44228041 -57152480 + MER5A DNA MER1_type 1 183 -6 192 375 98 0 chr15 44228049 44228161 -57152360 + L2 LINE L2 3150 3272 0 212 0 36 0 chr15 44229283 44229311 -57151210 + (CA)n Simple_repeat Simple_repeat 2 30 0 318 318 159 0 chr15 44229311 44229443 -57151078 - L1ME LINE L1 -462 5659 5507 532 280 106 5 chr15 44229769 44229958 -57150563 + MIR SINE MIR 49 256 -6 349 315 90 63 chr15 44230014 44230500 -57150021 - L1ME LINE L1 -1015 5131 4618 1056 298 79 33 chr15 44230500 44230930 -57149591 + LTR16A LTR ERVL 1 450 0 349 315 90 63 chr15 44230930 44231167 -57149354 - L1ME LINE L1 -1528 4618 4389 493 318 46 71 chr15 44231221 44231501 -57149020 + L3 LINE CR1 1266 1538 -39 836 254 18 0 chr15 44231859 44232028 -57148493 + MER58A DNA MER1_type 1 172 -52 323 378 31 0 chr15 44232066 44232193 -57148328 + MIR SINE MIR 6 136 -126 1071 273 135 16 chr15 44232254 44232573 -57147948 - LTR18A LTR ERVL 0 357 1 4230 144 65 1 chr15 44232574 44233220 -57147301 - HERVL18 LTR ERVL 0 6047 5361 2022 264 57 4 chr15 44233220 44233973 -57146548 + L1ME1 LINE L1 2846 3638 -2508 1624 191 71 45 chr15 44234120 44234502 -57146019 - MLT2B1 LTR ERVL -128 392 1 3525 206 95 47 chr15 44234509 44235694 -57144827 + L1ME1 LINE L1 4069 5310 -836 803 158 0 0 chr15 44235699 44235813 -57144708 + FLAM_C SINE Alu 5 118 -15 8778 69 0 1 chr15 44235813 44237670 -57142851 + L1PA7 LINE L1 4291 6148 -6 913 172 6 35 chr15 44237670 44237844 -57142677 + AluJb SINE Alu 134 302 -10 2858 221 84 27 chr15 44237845 44238596 -57141925 + L1ME1 LINE L1 5299 6092 -74 26 0 0 0 chr15 44238609 44238635 -57141886 + AT_rich Low_complexity Low_complexity 1 26 0 225 244 0 0 chr15 44238942 44238987 -57141534 - MIR SINE MIR -128 134 90 261 87 43 0 chr15 44238988 44239034 -57141487 + L1MC3 LINE L1 7738 7785 0 666 239 43 129 chr15 44239077 44239496 -57141025 + MLT1F-int LTR MaLR 982 1364 -7 1118 235 158 11 chr15 44239601 44239963 -57140558 + MLT1F LTR MaLR 128 542 0 207 186 0 0 chr15 44240716 44240759 -57139762 + (CAT)n Simple_repeat Simple_repeat 2 44 0 736 267 42 0 chr15 44240781 44240972 -57139549 - MIR SINE MIR -30 232 34 1531 202 13 23 chr15 44241849 44242156 -57138365 - MER58B DNA MER1_type -37 304 1 213 344 0 0 chr15 44242191 44242252 -57138269 + L2 LINE L2 3187 3247 -25 377 214 61 20 chr15 44243290 44243388 -57137133 + L2 LINE L2 3211 3312 -1 186 43 0 0 chr15 44244211 44244234 -57136287 + (A)n Simple_repeat Simple_repeat 1 23 0 1001 210 79 98 chr15 44244791 44245258 -57135263 + MLT1C LTR MaLR 2 459 -8 330 266 0 25 chr15 44248941 44249020 -57131501 - MER5A DNA MER1_type -40 149 73 599 261 152 13 chr15 44249125 44249355 -57131166 - MIR SINE MIR 0 262 1 205 268 42 0 chr15 44249475 44249546 -57130975 - MIR SINE MIR -128 134 61 3049 77 3 0 chr15 44251495 44251858 -57128663 + THE1B LTR MaLR 1 364 0 315 331 31 15 chr15 44252619 44252749 -57127772 + L2 LINE L2 3182 3313 0 266 300 0 22 chr15 44252999 44253089 -57127432 - L3 LINE CR1 -10 1567 1480 186 283 61 50 chr15 44254020 44254100 -57126421 + MIR SINE MIR 77 160 -102 2339 112 50 31 chr15 44254100 44254457 -57126064 - THE1B LTR MaLR 0 364 1 186 283 61 50 chr15 44254457 44254475 -57126046 + MIR SINE MIR 160 176 -86 2356 166 70 17 chr15 44254769 44255172 -57125349 - MSTB LTR MaLR -2 424 1 186 253 32 74 chr15 44256077 44256172 -57124349 + L3 LINE CR1 1412 1502 -75 279 299 248 0 chr15 44256699 44256856 -57123665 - MER91A DNA MER1_type 0 196 1 2119 138 0 0 chr15 44257098 44257395 -57123126 + AluSx SINE Alu 1 297 -15 186 167 0 0 chr15 44257805 44257841 -57122680 + T-rich Low_complexity Low_complexity 1 36 0 191 263 125 38 chr15 44258263 44258343 -57122178 - MIR SINE MIR -109 153 67 192 40 0 0 chr15 44259304 44259329 -57121192 + (GGAGA)n Simple_repeat Simple_repeat 1 25 0 2043 122 4 0 chr15 44259532 44259810 -57120711 + AluSp SINE Alu 3 281 -32 405 238 23 50 chr15 44260518 44260740 -57119781 + L1MD3 LINE L1 5290 7784 -196 23 54 0 0 chr15 44260740 44260777 -57119744 + AT_rich Low_complexity Low_complexity 1 37 0 533 327 118 2 chr15 44260961 44261390 -57119131 + L2 LINE L2 2580 3060 -212 343 302 9 28 chr15 44261420 44261526 -57118995 + L2 LINE L2 3165 3268 -4 293 286 44 0 chr15 44261530 44261621 -57118900 + L1ME LINE L1 5558 5652 -469 808 303 101 33 chr15 44262196 44262386 -57118135 - L1MC/D LINE L1 -775 5371 5195 2076 136 0 3 chr15 44262386 44262680 -57117841 + AluSx SINE Alu 1 293 -19 808 303 101 33 chr15 44262680 44263588 -57116933 - L1MC/D LINE L1 -951 5195 4542 211 354 133 29 chr15 44263815 44264227 -57116294 - L2 LINE L2 -815 2499 2045 2206 112 13 0 chr15 44264245 44264548 -57115973 + AluSp SINE Alu 7 313 0 605 333 0 0 chr15 44264645 44264819 -57115702 + MIR SINE MIR 34 207 -55 622 247 75 17 chr15 44265232 44265406 -57115115 - L1MC/D LINE L1 -2011 5797 5614 204 213 0 0 chr15 44268365 44268412 -57112109 + (CA)n Simple_repeat Simple_repeat 2 48 0 709 271 42 28 chr15 44268532 44268746 -57111775 + MIR SINE MIR 18 234 -28 814 293 19 0 chr15 44269043 44269258 -57111263 - LTR16C LTR ERVL -62 429 211 290 209 70 12 chr15 44269302 44269388 -57111133 - LTR16C LTR ERVL -364 127 37 1485 203 11 0 chr15 44269822 44270083 -57110438 + Tigger7 DNA MER2_type 1 264 -2223 712 121 0 0 chr15 44270083 44270182 -57110339 + Tigger7 DNA MER2_type 2393 2491 0 2291 84 3 0 chr15 44270298 44270602 -57109919 + AluY SINE Alu 1 305 0 904 230 72 5 chr15 44271453 44271662 -57108859 - MER58A DNA MER1_type -1 223 1 643 288 106 0 chr15 44272001 44272237 -57108284 + MIR SINE MIR 2 262 0 328 282 86 17 chr15 44273049 44273166 -57107355 - MER5B DNA MER1_type 0 178 54 2228 113 3 0 chr15 44273187 44273479 -57107042 - AluSx SINE Alu -19 293 1 941 239 77 8 chr15 44273482 44273741 -57106780 - L1ME3A LINE L1 -2 6168 5892 566 163 69 15 chr15 44273733 44273867 -57106654 - L1MC3 LINE L1 -1 7765 6224 * 800 210 5 107 chr15 44273879 44274127 -57106394 - L1ME3A LINE L1 -274 5896 5673 236 234 21 0 chr15 44274129 44274176 -57106345 - MER5B DNA MER1_type -129 49 2 305 226 78 70 chr15 44274577 44274692 -57105829 - L1ME3A LINE L1 -783 5381 5266 1707 199 24 53 chr15 44274912 44275189 -57105332 - MLT1C LTR MaLR -8 459 196 1907 215 19 31 chr15 44275189 44275608 -57104913 + MLT2D LTR ERVL 1 414 0 1707 199 24 53 chr15 44275608 44275748 -57104773 - MLT1C LTR MaLR -271 196 54 252 330 31 21 chr15 44276113 44276210 -57104311 + MIR SINE MIR 22 119 -143 267 377 108 0 chr15 44276795 44276925 -57103596 + L2 LINE L2 3116 3259 -13 23 33 0 0 chr15 44279413 44279443 -57101078 + AT_rich Low_complexity Low_complexity 1 30 0 624 244 146 5 chr15 44279717 44279922 -57100599 + MIR SINE MIR 28 261 -1 1391 216 82 18 chr15 44280091 44280434 -57100087 - MLT1A1 LTR MaLR 0 365 1 736 278 121 35 chr15 44283154 44283690 -57096831 - L1ME4a LINE L1 -19 6102 5521 241 372 40 40 chr15 44284031 44284257 -57096264 + L2 LINE L2 2836 3061 -211 326 387 0 15 chr15 44285246 44285383 -57095138 + MIR SINE MIR 8 142 -120 * 767 262 145 21 chr15 44285381 44285671 -57094850 + L2 LINE L2 2988 3313 0 414 306 32 8 chr15 44287605 44287729 -57092792 - L2 LINE L2 -5 3267 3141 1246 308 156 48 chr15 44287775 44289059 -57091462 + L2 LINE L2 709 2130 -1184 382 286 95 29 chr15 44289087 44289297 -57091224 - L2 LINE L2 -634 2680 2457 353 309 21 0 chr15 44289513 44289610 -57090911 + L2 LINE L2 3173 3271 -1 492 267 23 0 chr15 44289656 44289787 -57090734 + MIR SINE MIR 92 225 -37 29 28 0 0 chr15 44289805 44289841 -57090680 + AT_rich Low_complexity Low_complexity 1 36 0 745 263 163 8 chr15 44291000 44291380 -57089141 - LTR16A LTR ERVL -3 447 9 22 35 0 0 chr15 44292669 44292698 -57087823 + AT_rich Low_complexity Low_complexity 1 29 0 2436 115 29 35 chr15 44293829 44294204 -57086317 + MER83C LTR ERV1 1 373 0 415 309 32 8 chr15 44294277 44294403 -57086118 - L2 LINE L2 0 3313 3185 268 281 0 105 chr15 44294409 44294523 -57085998 + MIR SINE MIR 8 109 -153 351 284 99 6 chr15 44294559 44294721 -57085800 - MER5B DNA MER1_type 0 178 2 413 257 18 18 chr15 44295141 44295250 -57085271 - MIR3 SINE MIR -36 172 64 272 235 0 0 chr15 44295314 44295365 -57085156 - Tigger5 DNA MER2_type 0 2323 2273 2113 116 3 7 chr15 44296390 44296675 -57083846 + AluSx SINE Alu 1 284 -28 225 65 0 0 chr15 44296678 44296709 -57083812 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 899 330 73 27 chr15 44297001 44297783 -57082738 + HAL1b LINE L1 15 832 -516 29 28 0 0 chr15 44297902 44297938 -57082583 + AT_rich Low_complexity Low_complexity 1 36 0 354 91 0 0 chr15 44298109 44298164 -57082357 + (TG)n Simple_repeat Simple_repeat 2 56 0 2392 209 75 87 chr15 44298181 44298698 -57081823 + L1MC5 LINE L1 6646 7150 -811 3169 85 78 9 chr15 44298698 44299081 -57081440 + MLT2A2 LTR ERVL 1 417 -36 338 100 17 0 chr15 44299081 44299141 -57081380 + (TA)n Simple_repeat Simple_repeat 2 62 0 3169 85 78 9 chr15 44299141 44299181 -57081340 + MLT2A2 LTR ERVL 417 453 0 2392 209 75 87 chr15 44299181 44299553 -57080968 + L1MC5 LINE L1 7150 7525 -436 240 238 30 152 chr15 44299641 44299743 -57080778 + L1ME3A LINE L1 5961 6021 -149 3354 25 0 0 chr15 44299743 44300108 -57080413 - L1PA5 LINE L1 -8 6146 5782 240 238 30 152 chr15 44300108 44300236 -57080285 + L1ME3A LINE L1 6021 6163 -7 187 216 0 0 chr15 44300408 44300445 -57080076 - L2 LINE L2 -14 3299 3263 818 173 13 16 chr15 44301096 44301334 -57079187 + GA-rich Low_complexity Low_complexity 1 237 0 711 295 55 14 chr15 44301340 44301557 -57078964 - MIR SINE MIR -35 227 2 416 323 56 0 chr15 44301679 44301840 -57078681 + L2 LINE L2 2490 2659 -655 236 218 11 115 chr15 44304361 44304448 -57076073 + L2 LINE L2 3231 3308 -5 22 0 0 0 chr15 44304448 44304470 -57076051 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr15 44304543 44304588 -57075933 + AT_rich Low_complexity Low_complexity 1 45 0 562 203 104 126 chr15 44304608 44305100 -57075421 - L1ME4a LINE L1 -59 6062 5533 408 254 139 48 chr15 44305169 44305527 -57074994 - L1ME4a LINE L1 -743 5403 5039 25 0 0 0 chr15 44305535 44305560 -57074961 + AT_rich Low_complexity Low_complexity 1 25 0 24 77 0 0 chr15 44306537 44306589 -57073932 + AT_rich Low_complexity Low_complexity 1 52 0 371 314 50 0 chr15 44306589 44306710 -57073811 - MIR SINE MIR -58 204 78 870 295 8 0 chr15 44308319 44308560 -57071961 + MIR SINE MIR 18 260 -2 2011 127 3 16 chr15 44308828 44309136 -57071385 + AluSx SINE Alu 1 304 -8 49 34 0 34 chr15 44309232 44309321 -57071200 + AT_rich Low_complexity Low_complexity 1 86 0 26 50 0 0 chr15 44309679 44309719 -57070802 + AT_rich Low_complexity Low_complexity 1 40 0 282 296 11 11 chr15 44310191 44310279 -57070242 + MIR SINE MIR 16 103 -105 736 239 98 17 chr15 44310613 44310847 -57069674 + MARNA DNA Mariner 145 397 -189 25 31 0 0 chr15 44311020 44311052 -57069469 + AT_rich Low_complexity Low_complexity 1 32 0 335 257 178 6 chr15 44311123 44311269 -57069252 - MIR3 SINE MIR -36 172 3 235 298 84 53 chr15 44312190 44312321 -57068200 + MIR3 SINE MIR 9 143 -65 212 321 25 0 chr15 44312517 44312598 -57067923 + (TATG)n Simple_repeat Simple_repeat 3 85 0 2086 127 109 15 chr15 44312633 44313028 -57067493 + MSTB1 LTR MaLR 1 432 0 1035 320 90 6 chr15 44313305 44313825 -57066696 + L2 LINE L2 2751 3312 -1 401 259 124 51 chr15 44313843 44314191 -57066330 - MLT1F1 LTR MaLR -29 538 158 206 350 67 0 chr15 44314510 44314570 -57065951 + MIR SINE MIR 43 106 -102 22 0 0 0 chr15 44317563 44317585 -57062936 + AT_rich Low_complexity Low_complexity 1 22 0 210 274 244 36 chr15 44318313 44318481 -57062040 - L2 LINE L2 -1 3312 3110 208 139 0 0 chr15 44320811 44320847 -57059674 + (A)n Simple_repeat Simple_repeat 1 36 0 682 218 8 23 chr15 44321186 44321319 -57059202 + MER58B DNA MER1_type 211 341 0 2391 80 0 10 chr15 44322589 44322902 -57057619 + AluSg SINE Alu 1 310 0 27 0 0 0 chr15 44323107 44323134 -57057387 + AT_rich Low_complexity Low_complexity 1 27 0 34 42 0 0 chr15 44324452 44324500 -57056021 + AT_rich Low_complexity Low_complexity 1 48 0 475 256 8 16 chr15 44325149 44325278 -57055243 + MER94 DNA DNA 5 132 -2 244 353 26 26 chr15 44329063 44329179 -57051342 + L2 LINE L2 3197 3312 -1 215 216 0 0 chr15 44330724 44330761 -57049760 + polypurine Low_complexity Low_complexity 5 41 0 36 40 0 0 chr15 44330786 44330836 -57049685 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr15 44331779 44331800 -57048721 + AT_rich Low_complexity Low_complexity 1 21 0 1553 190 116 19 chr15 44334190 44334663 -57045858 + Charlie1b DNA MER1_type 1 519 -4 26 0 0 0 chr15 44335665 44335691 -57044830 + AT_rich Low_complexity Low_complexity 1 26 0 248 254 105 39 chr15 44335827 44336008 -57044513 + L1ME4a LINE L1 1476 1668 -4728 378 283 108 26 chr15 44336491 44336869 -57043652 + L1ME4a LINE L1 2343 2751 -3464 418 247 113 34 chr15 44337098 44337337 -57043184 + L1ME4a LINE L1 5695 5952 -238 281 247 67 22 chr15 44337374 44337463 -57043058 + L1ME4a LINE L1 6025 6117 -73 221 231 0 0 chr15 44339158 44339197 -57041324 + (TG)n Simple_repeat Simple_repeat 2 40 0 315 49 0 0 chr15 44340212 44340253 -57040268 + (CA)n Simple_repeat Simple_repeat 2 42 0 181 182 36 0 chr15 44340839 44340894 -57039627 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 26 0 0 0 chr15 44340898 44340924 -57039597 + AT_rich Low_complexity Low_complexity 1 26 0 503 248 47 8 chr15 44342454 44342583 -57037938 - MIR SINE MIR -48 214 81 428 264 77 26 chr15 44342602 44342659 -57037862 - MIR SINE MIR -49 213 160 13986 118 38 54 chr15 44342659 44345115 -57035406 + Tigger1 DNA MER2_type 2 2417 -1 428 264 77 26 chr15 44345115 44345212 -57035309 - MIR SINE MIR -102 160 51 23 0 0 0 chr15 44347791 44347814 -57032707 + AT_rich Low_complexity Low_complexity 1 23 0 2275 88 3 3 chr15 44349453 44349748 -57030773 - AluSg1 SINE Alu -14 295 1 2176 102 0 0 chr15 44349963 44350279 -57030242 - AluSx SINE Alu 0 316 1 250 298 0 36 chr15 44350379 44350463 -57030058 + MER5B DNA MER1_type 95 175 -3 24 32 0 0 chr15 44351300 44351331 -57029190 + AT_rich Low_complexity Low_complexity 1 31 0 10207 167 49 26 chr15 44351921 44351971 -57028550 + L1MA9 LINE L1 2995 3042 -3270 1967 158 0 3 chr15 44351971 44352275 -57028246 + AluSx SINE Alu 1 303 -9 10207 167 49 26 chr15 44352275 44355468 -57025053 + L1MA9 LINE L1 3042 6307 -5 207 0 0 0 chr15 44356073 44356096 -57024425 + (A)n Simple_repeat Simple_repeat 1 23 0 339 65 0 0 chr15 44359259 44359305 -57021216 + (CA)n Simple_repeat Simple_repeat 1 46 0 397 268 96 18 chr15 44359393 44359557 -57020964 + MIR SINE MIR 17 191 -71 236 170 189 0 chr15 44359950 44360003 -57020518 - MER58A DNA MER1_type -38 69 7 425 206 165 0 chr15 44360003 44360100 -57020421 + MER96B DNA MER1_type? 305 417 0 2144 82 4 0 chr15 44360348 44360663 -57019858 - AluY SINE Alu 0 316 1 1026 245 139 44 chr15 44360959 44361391 -57019130 - MLT1J LTR MaLR 0 511 39 197 178 22 0 chr15 44361936 44361981 -57018540 + CT-rich Low_complexity Low_complexity 1 46 0 318 240 114 40 chr15 44363113 44363288 -57017233 - MER95 LTR ERV -4 427 240 4912 172 31 7 chr15 44364279 44365318 -57015203 + L1MC2 LINE L1 5186 6331 -13 2212 99 0 35 chr15 44366473 44366786 -57013735 + AluSg SINE Alu 1 302 -8 211 281 88 0 chr15 44368859 44368916 -57011605 + L2 LINE L2 3162 3223 -49 2249 120 0 0 chr15 44369691 44369999 -57010522 - AluSx SINE Alu -4 308 1 449 275 161 7 chr15 44370017 44370166 -57010355 + MER5A DNA MER1_type 18 189 0 246 105 0 0 chr15 44370732 44370770 -57009751 + (CTTTG)n Simple_repeat Simple_repeat 2 39 0 24 32 0 0 chr15 44374822 44374853 -57005668 + AT_rich Low_complexity Low_complexity 1 31 0 359 276 41 8 chr15 44375132 44375255 -57005266 - L3 LINE CR1 -260 1317 1191 329 380 75 21 chr15 44375449 44375728 -57004793 + L2 LINE L2 2323 2616 -698 229 340 142 7 chr15 44376082 44376223 -57004298 + MIR SINE MIR 97 256 -6 1365 335 120 20 chr15 44376403 44377269 -57003252 - L3 LINE CR1 -505 1072 120 846 295 29 70 chr15 44377550 44377964 -57002557 + L2 LINE L2 2917 3313 0 208 220 0 40 chr15 44378760 44378810 -57001711 - L2 LINE L2 -5 3308 3261 1356 307 32 2 chr15 44379315 44379719 -57000802 - LTR16A LTR ERVL 0 450 35 22 70 0 0 chr15 44380647 44380690 -56999831 + AT_rich Low_complexity Low_complexity 1 43 0 236 327 88 18 chr15 44382606 44382719 -56997802 + MIR3 SINE MIR 5 125 -83 237 268 37 85 chr15 44382833 44382915 -56997606 + MIR SINE MIR 29 106 -102 217 339 16 74 chr15 44383112 44383233 -56997288 + MIR3 SINE MIR 87 200 -8 463 300 25 80 chr15 44383360 44383560 -56996961 - MIR SINE MIR -66 196 8 861 232 18 36 chr15 44385299 44385519 -56995002 - MIR SINE MIR -43 219 4 1938 152 0 10 chr15 44385814 44386110 -56994411 + AluSx SINE Alu 2 294 -18 1846 155 40 10 chr15 44388293 44388589 -56991932 - AluJo SINE Alu -7 305 1 2282 85 0 17 chr15 44389050 44389344 -56991177 - AluSp SINE Alu -24 289 1 224 226 38 0 chr15 44390062 44390115 -56990406 + A-rich Low_complexity Low_complexity 4 58 0 1708 150 14 37 chr15 44390552 44390846 -56989675 + AluSq SINE Alu 3 289 -24 1854 152 10 35 chr15 44391442 44391752 -56988769 + AluSq SINE Alu 3 304 -9 21 0 0 0 chr15 44391906 44391927 -56988594 + AT_rich Low_complexity Low_complexity 1 21 0 27 87 0 0 chr15 44393030 44393099 -56987422 + AT_rich Low_complexity Low_complexity 1 69 0 480 267 48 24 chr15 44393783 44394057 -56986464 - MIR SINE MIR 0 262 20 2289 82 24 0 chr15 44394369 44394538 -56985983 - AluY SINE Alu -10 301 121 182 0 107 0 chr15 44394538 44394566 -56985955 + T-rich Low_complexity Low_complexity 5 35 0 2289 82 24 0 chr15 44394566 44394690 -56985831 - AluY SINE Alu -190 121 1 180 0 0 0 chr15 44395140 44395160 -56985361 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 378 250 20 40 chr15 44395591 44395743 -56984778 + L1MC5 LINE L1 7758 7906 -55 22 0 0 0 chr15 44396073 44396095 -56984426 + AT_rich Low_complexity Low_complexity 1 22 0 1245 154 23 0 chr15 44397798 44398019 -56982502 + MER33 DNA MER1_type 1 226 -98 1920 166 0 10 chr15 44398674 44398976 -56981545 - AluJb SINE Alu -13 299 1 182 310 35 0 chr15 44398977 44399035 -56981486 - L2 LINE L2 -8 3264 3205 1898 137 6 44 chr15 44400129 44400450 -56980071 + AluSc SINE Alu 1 309 0 511 80 45 0 chr15 44400458 44400546 -56979975 + GA-rich Low_complexity Low_complexity 1 92 0 822 150 0 0 chr15 44400637 44400770 -56979751 + AluJo/FLAM SINE Alu 1 133 -169 282 81 0 0 chr15 44400770 44400807 -56979714 + AluSg/x SINE Alu 131 167 -133 1335 122 0 5 chr15 44400807 44400995 -56979526 + AluSg/x SINE Alu 116 302 -10 492 18 0 0 chr15 44400995 44401052 -56979469 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 41 0 0 0 chr15 44403316 44403357 -56977164 + AT_rich Low_complexity Low_complexity 1 41 0 189 74 0 0 chr15 44403454 44403481 -56977040 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 193 340 50 0 chr15 44403928 44404028 -56976493 + MIR SINE MIR 83 187 -75 382 304 107 36 chr15 44404083 44404251 -56976270 - MER5A DNA MER1_type -3 186 7 1577 222 75 53 chr15 44405137 44405682 -56974839 - MER34B LTR ERV1 0 565 9 193 288 15 30 chr15 44405931 44405997 -56974524 - MIR SINE MIR -3 259 195 713 176 17 0 chr15 44406312 44406431 -56974090 + FLAM_A SINE Alu 1 121 -12 180 269 0 96 chr15 44408996 44409048 -56971473 + L3 LINE CR1 1022 1068 -509 228 200 20 0 chr15 44409418 44409468 -56971053 + (TA)n Simple_repeat Simple_repeat 1 51 0 215 157 20 0 chr15 44409568 44409619 -56970902 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr15 44409696 44409718 -56970803 + AT_rich Low_complexity Low_complexity 1 22 0 445 363 15 25 chr15 44410304 44410505 -56970016 + MIR SINE MIR 8 206 -56 395 261 85 26 chr15 44412074 44412227 -56968294 - L2 LINE L2 0 3313 3152 672 251 68 0 chr15 44412335 44412498 -56968023 + MIR SINE MIR 2 175 -87 2231 107 17 0 chr15 44412603 44412903 -56967618 + AluSg SINE Alu 1 305 -5 328 315 86 31 chr15 44412920 44413082 -56967439 - L2 LINE L2 -219 3053 2883 343 326 101 17 chr15 44414017 44414195 -56966326 + MIR SINE MIR 20 212 -50 365 323 0 12 chr15 44414643 44414807 -56965714 + T-rich Low_complexity Low_complexity 2 163 0 216 263 42 0 chr15 44415014 44415109 -56965412 + (TG)n Simple_repeat Simple_repeat 1 99 0 2280 75 0 33 chr15 44415328 44415633 -56964888 + AluSx SINE Alu 1 295 -17 180 125 0 0 chr15 44416214 44416246 -56964275 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 780 178 0 22 chr15 44416392 44416527 -56963994 + FLAM_A SINE Alu 1 132 -1 25 0 0 0 chr15 44416567 44416592 -56963929 + AT_rich Low_complexity Low_complexity 1 25 0 752 245 10 20 chr15 44416759 44416959 -56963562 - MLT1J LTR MaLR -307 204 7 384 22 0 0 chr15 44416960 44417005 -56963516 + (CA)n Simple_repeat Simple_repeat 2 46 0 247 318 36 27 chr15 44417161 44417271 -56963250 - L2 LINE L2 -217 3055 2945 400 216 189 27 chr15 44417395 44417506 -56963015 + L2 LINE L2 3185 3313 0 193 306 0 0 chr15 44417586 44417635 -56962886 - MIR SINE MIR -139 123 75 448 339 132 32 chr15 44417830 44418140 -56962381 - L2 LINE L2 -21 3251 2911 29 28 0 0 chr15 44418185 44418221 -56962300 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr15 44418489 44418525 -56961996 + AT_rich Low_complexity Low_complexity 1 36 0 247 315 38 102 chr15 44418611 44418846 -56961675 - L2 LINE L2 -531 2783 2564 406 251 131 27 chr15 44418898 44419081 -56961440 + MER112 DNA MER1_type 12 213 -47 197 318 171 29 chr15 44419093 44419439 -56961082 - L2 LINE L2 -941 2373 1979 1691 175 3 14 chr15 44420097 44420417 -56960104 + AluJb SINE Alu 1 317 0 2168 114 0 0 chr15 44420528 44420818 -56959703 - AluSx SINE Alu -22 290 1 853 101 14 0 chr15 44420878 44421026 -56959495 + (TA)n Simple_repeat Simple_repeat 2 151 0 22 0 0 0 chr15 44421607 44421629 -56958892 + AT_rich Low_complexity Low_complexity 1 22 0 1734 187 3 0 chr15 44423388 44423682 -56956839 + AluJo SINE Alu 1 295 -17 306 315 87 7 chr15 44424053 44424202 -56956319 + L3 LINE CR1 1353 1513 -64 2214 104 3 0 chr15 44424243 44424550 -56955971 + AluSg1 SINE Alu 1 308 -1 353 250 257 7 chr15 44424864 44425012 -56955509 + L1ME LINE L1 5582 5766 -355 3437 125 13 47 chr15 44426113 44426730 -56953791 - L1PA16 LINE L1 -9 6157 5562 22 0 0 0 chr15 44427332 44427354 -56953167 + AT_rich Low_complexity Low_complexity 1 22 0 2152 112 10 0 chr15 44427366 44427669 -56952852 + AluSx SINE Alu 1 306 -6 359 272 72 33 chr15 44428672 44428852 -56951669 + MER5A DNA MER1_type 2 188 -1 22 0 0 0 chr15 44429188 44429210 -56951311 + AT_rich Low_complexity Low_complexity 1 22 0 1873 144 14 3 chr15 44429628 44429912 -56950609 + AluSq SINE Alu 1 287 -26 21 0 0 0 chr15 44429912 44429933 -56950588 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr15 44431544 44431575 -56948946 + (CA)n Simple_repeat Simple_repeat 1 31 0 2367 95 7 0 chr15 44432790 44433095 -56947426 + AluSq SINE Alu 1 307 -6 343 219 337 0 chr15 44433096 44433255 -56947266 - MIR SINE MIR 0 262 52 219 256 0 0 chr15 44433324 44433363 -56947158 - L2 LINE L2 -79 3193 3155 196 302 0 0 chr15 44433501 44433554 -56946967 + L2 LINE L2 3261 3313 0 21 0 0 0 chr15 44433564 44433585 -56946936 + AT_rich Low_complexity Low_complexity 1 21 0 3147 211 90 10 chr15 44434068 44435212 -56945309 - L1ME1 LINE L1 -15 6151 4923 342 0 0 0 chr15 44435460 44435498 -56945023 + (A)n Simple_repeat Simple_repeat 1 38 0 2422 53 0 10 chr15 44435507 44435806 -56944715 + AluY SINE Alu 1 296 -15 2270 116 0 0 chr15 44436025 44436327 -56944194 + AluSc SINE Alu 1 302 -7 2598 106 3 16 chr15 44437309 44437678 -56942843 - THE1B LTR MaLR 0 364 1 10635 84 38 46 chr15 44437678 44438947 -56941574 - THE1B-int LTR MaLR 0 1580 324 2869 0 0 0 chr15 44438947 44439254 -56941267 + AluYa5 SINE Alu 1 307 -4 10635 84 38 46 chr15 44439254 44439574 -56940947 - THE1B-int LTR MaLR -1256 324 3 948 137 7 15 chr15 44439574 44439829 -56940692 - THE1B LTR MaLR -5 359 1 261 299 91 47 chr15 44440365 44440663 -56939858 + L3b LINE CR1 1107 1417 -166 24 0 0 0 chr15 44440827 44440851 -56939670 + AT_rich Low_complexity Low_complexity 1 24 0 2015 118 11 0 chr15 44440857 44441127 -56939394 + AluSx SINE Alu 5 277 -35 252 0 0 0 chr15 44441127 44441155 -56939366 + (TAA)n Simple_repeat Simple_repeat 3 30 0 315 0 0 0 chr15 44441216 44441251 -56939270 + (CA)n Simple_repeat Simple_repeat 1 35 0 413 314 14 67 chr15 44441290 44441500 -56939021 - MIR SINE MIR -18 244 46 684 325 8 17 chr15 44442656 44442896 -56937625 + MIR SINE MIR 25 262 0 338 192 14 0 chr15 44444338 44444411 -56936110 - MER116 DNA Mariner 0 80 7 1820 162 14 0 chr15 44444551 44444856 -56935665 - AluJo SINE Alu 0 309 1 313 266 92 58 chr15 44446639 44446677 -56933844 - MIR3 SINE MIR -13 195 160 1390 172 32 3 chr15 44446677 44446985 -56933536 - MER33 DNA MER1_type -4 320 4 313 266 92 58 chr15 44446985 44447119 -56933402 - MIR3 SINE MIR -48 160 17 316 258 0 54 chr15 44447378 44447471 -56933050 + MER5A DNA MER1_type 9 96 -93 22 70 0 0 chr15 44449678 44449721 -56930800 + AT_rich Low_complexity Low_complexity 1 43 0 575 305 25 15 chr15 44451229 44451432 -56929089 - MIR SINE MIR -55 207 3 28 29 0 0 chr15 44451462 44451497 -56929024 + AT_rich Low_complexity Low_complexity 1 35 0 195 205 34 17 chr15 44451515 44451632 -56928889 + (TA)n Simple_repeat Simple_repeat 2 120 0 2230 93 42 0 chr15 44451789 44452078 -56928443 + AluSq SINE Alu 3 303 -10 2033 137 3 3 chr15 44453264 44453572 -56926949 - AluSx SINE Alu 0 308 1 1555 163 121 69 chr15 44453603 44453671 -56926850 - MLT1D LTR MaLR 0 505 442 2008 139 24 0 chr15 44453671 44453966 -56926555 + AluSx SINE Alu 1 302 -10 1555 163 121 69 chr15 44453966 44454377 -56926144 - MLT1D LTR MaLR -63 442 1 554 174 87 9 chr15 44455511 44455626 -56924895 - L2 LINE L2 -1 3312 3189 1253 351 106 34 chr15 44456172 44457167 -56923354 - L2 LINE L2 -12 3260 2072 2364 128 26 10 chr15 44457167 44457551 -56922970 + MLT1B LTR MaLR 1 390 0 1253 351 106 34 chr15 44457551 44458242 -56922279 - L2 LINE L2 -1200 2072 1433 767 40 0 0 chr15 44459005 44459104 -56921417 + AluY SINE Alu 198 296 -15 538 247 147 6 chr15 44459107 44459277 -56921244 - MIR SINE MIR -18 244 51 203 246 0 0 chr15 44461356 44461417 -56919104 + CT-rich Low_complexity Low_complexity 1 61 0 222 37 0 0 chr15 44461682 44461709 -56918812 + (CA)n Simple_repeat Simple_repeat 1 27 0 885 275 16 8 chr15 44461911 44462162 -56918359 + MIR SINE MIR 6 258 -4 447 227 126 33 chr15 44462398 44462580 -56917941 + MIR SINE MIR 15 212 -50 415 235 188 20 chr15 44463766 44463915 -56916606 + MIR SINE MIR 76 249 -13 365 296 23 0 chr15 44464119 44464207 -56916314 - MIR SINE MIR -116 146 57 1770 175 31 0 chr15 44465485 44465776 -56914745 - AluJb SINE Alu -12 300 1 370 279 47 28 chr15 44469767 44469938 -56910583 + MIR3 SINE MIR 3 177 -31 320 77 19 0 chr15 44470240 44470292 -56910229 + (TA)n Simple_repeat Simple_repeat 1 53 0 6698 107 55 32 chr15 44470366 44471543 -56908978 - Tigger3b DNA MER2_type -27 1204 1 829 210 45 104 chr15 44471714 44472071 -56908450 + L1MC4 LINE L1 7702 8037 -5 264 184 55 18 chr15 44472093 44472202 -56908319 + (TA)n Simple_repeat Simple_repeat 1 113 0 1598 196 32 40 chr15 44473362 44473739 -56906782 - MLT1A2 LTR MaLR 0 374 1 1642 195 25 0 chr15 44473765 44474047 -56906474 - AluJb SINE Alu -22 290 2 25 0 0 0 chr15 44474131 44474156 -56906365 + AT_rich Low_complexity Low_complexity 1 25 0 1871 144 27 7 chr15 44474607 44474905 -56905616 + AluJb SINE Alu 6 309 -3 2184 123 7 0 chr15 44474907 44475217 -56905304 + AluSx SINE Alu 1 312 0 1763 174 7 3 chr15 44475730 44476050 -56904471 - AluJo SINE Alu 0 312 1 492 256 7 29 chr15 44476845 44476982 -56903539 - MER91A DNA MER1_type -36 160 27 23 54 0 0 chr15 44477516 44477553 -56902968 + AT_rich Low_complexity Low_complexity 1 37 0 295 221 58 0 chr15 44477790 44477876 -56902645 - MLT1L LTR MaLR 0 615 525 1652 179 27 7 chr15 44480890 44481191 -56899330 + AluJo SINE Alu 1 307 -5 345 319 0 35 chr15 44482834 44482947 -56897574 + L3 LINE CR1 1455 1563 -14 2865 10 0 0 chr15 44483179 44483491 -56897030 + AluYb8 SINE Alu 1 312 -6 202 241 35 35 chr15 44484087 44484145 -56896376 + L2 LINE L2 3205 3262 -10 195 273 61 0 chr15 44485260 44485326 -56895195 - L2 LINE L2 -566 2748 2679 924 250 143 41 chr15 44485338 44485730 -56894791 - LTR16A LTR ERVL 0 450 19 26 0 0 0 chr15 44486306 44486332 -56894189 + AT_rich Low_complexity Low_complexity 1 26 0 1623 204 3 14 chr15 44486332 44486621 -56893900 - AluJo SINE Alu -26 286 1 308 286 18 51 chr15 44486626 44486735 -56893786 + MER5A DNA MER1_type 40 143 -35 291 364 29 29 chr15 44486757 44486897 -56893624 + L2 LINE L2 2181 2320 -994 1939 135 44 0 chr15 44486966 44487262 -56893259 - AluSx SINE Alu -3 309 1 533 83 0 0 chr15 44487306 44487378 -56893143 + Alu SINE Alu 226 297 -13 354 281 85 53 chr15 44488073 44488319 -56892202 + L1 LINE L1 2257 2510 -3636 2172 134 3 6 chr15 44488337 44488651 -56891870 - AluSq SINE Alu 0 313 1 572 304 69 24 chr15 44488759 44489134 -56891387 + L1 LINE L1 2662 3053 -3093 402 338 56 43 chr15 44489207 44489441 -56891080 + MIR SINE MIR 8 244 -18 315 314 47 6 chr15 44489916 44490088 -56890433 + L1 LINE L1 3621 3799 -2347 207 0 0 0 chr15 44490773 44490796 -56889725 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 1510 173 14 38 chr15 44490799 44491088 -56889433 - AluJo SINE Alu -30 282 1 595 183 0 0 chr15 44491263 44491367 -56889154 - MLT1E1 LTR MaLR 0 654 551 257 0 30 0 chr15 44491371 44491404 -56889117 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 825 133 8 0 chr15 44491404 44491524 -56888997 - FLAM_C SINE Alu -22 121 1 983 190 87 72 chr15 44491525 44491796 -56888725 - MLT1E1 LTR MaLR -100 554 214 2223 120 0 3 chr15 44491796 44492104 -56888417 + AluSx SINE Alu 1 307 -5 983 190 87 72 chr15 44492104 44492268 -56888253 - MLT1E1 LTR MaLR -440 214 54 1951 138 0 63 chr15 44493467 44493800 -56886721 + AluJb SINE Alu 1 312 0 1493 254 114 85 chr15 44493924 44494883 -56885638 + L2 LINE L2 2327 3313 0 2182 127 17 0 chr15 44495082 44495382 -56885139 - AluSx SINE Alu -7 305 1 2056 102 14 3 chr15 44495388 44495681 -56884840 - AluSg SINE Alu -14 296 1 181 259 206 23 chr15 44495823 44495954 -56884567 - L2 LINE L2 -47 3266 3112 444 185 27 68 chr15 44496190 44496336 -56884185 - LTR1B LTR ERV1 -344 482 343 399 266 108 21 chr15 44496374 44496587 -56883934 - LTR1 LTR ERV1 -564 221 28 1494 216 127 20 chr15 44496676 44497079 -56883442 + MER92C LTR ERV1 1 446 -108 2163 130 0 7 chr15 44497079 44497387 -56883134 + AluSx SINE Alu 1 306 -6 1849 195 41 57 chr15 44497417 44497582 -56882939 + MLT1D LTR MaLR 1 167 -338 835 121 38 8 chr15 44497582 44497739 -56882782 - L1PA10 LINE L1 0 6168 6032 1849 195 41 57 chr15 44497739 44498086 -56882435 + MLT1D LTR MaLR 167 505 0 399 161 37 12 chr15 44498091 44498172 -56882349 + MER92C LTR ERV1 470 552 -2 424 304 176 2 chr15 44498172 44498403 -56882118 - L2 LINE L2 -312 3001 2732 2226 114 0 3 chr15 44498444 44498751 -56881770 + AluSc SINE Alu 1 306 -3 484 271 11 43 chr15 44498868 44499056 -56881465 - LTR33 LTR ERVL -11 510 329 490 318 6 6 chr15 44499128 44499304 -56881217 - LTR33 LTR ERVL -333 188 13 1901 204 22 32 chr15 44500892 44501396 -56879125 + MLT1D LTR MaLR 1 499 -6 1727 63 0 30 chr15 44501999 44502236 -56878285 - AluY SINE Alu -3 308 79 3376 112 10 51 chr15 44502370 44502517 -56878004 - Tigger4(Zombi) DNA MER2_type 0 2731 2580 2899 9 0 0 chr15 44502517 44502833 -56877688 - AluYb8 SINE Alu -2 316 1 3376 112 10 51 chr15 44502833 44503273 -56877248 - Tigger4(Zombi) DNA MER2_type -151 2580 2168 803 169 56 0 chr15 44503275 44503435 -56877086 - Tigger4(Zombi) DNA MER2_type -2559 172 4 333 229 76 9 chr15 44504094 44504199 -56876322 - MER103 DNA DNA -1 165 54 1714 181 0 23 chr15 44504420 44504719 -56875802 - AluJb SINE Alu -20 292 1 752 216 44 5 chr15 44505159 44505477 -56875044 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr15 44506378 44506399 -56874122 + AT_rich Low_complexity Low_complexity 1 21 0 654 80 44 53 chr15 44506399 44506512 -56874009 - HY1 scRNA scRNA 0 112 1 2169 131 0 13 chr15 44506882 44507194 -56873327 - AluSx SINE Alu -4 308 1 1151 241 153 38 chr15 44507686 44508216 -56872305 + Charlie2 DNA MER1_type 1 591 -2271 25 0 0 0 chr15 44508551 44508576 -56871945 + AT_rich Low_complexity Low_complexity 1 25 0 311 241 105 43 chr15 44508701 44508863 -56871658 - L2 LINE L2 -100 3213 3042 204 192 370 41 chr15 44508864 44509010 -56871511 - L2 LINE L2 -1148 2166 1973 1163 172 180 16 chr15 44509100 44509344 -56871177 + AluJb SINE Alu 1 284 -18 759 265 35 48 chr15 44509402 44509580 -56870941 + MIR SINE MIR 9 188 -74 1920 137 0 20 chr15 44509580 44509879 -56870642 - AluJo SINE Alu -19 293 1 2445 76 3 0 chr15 44509881 44510185 -56870336 - AluSp SINE Alu -8 305 1 759 265 35 48 chr15 44510185 44510233 -56870288 + MIR SINE MIR 189 235 -27 2137 61 71 0 chr15 44510422 44510702 -56869819 + AluSp SINE Alu 1 300 -13 250 326 0 0 chr15 44511245 44511343 -56869178 + HAL1 LINE L1 1634 1731 -776 207 298 0 0 chr15 44511394 44511451 -56869070 - L2 LINE L2 -1062 2252 2196 21 0 0 0 chr15 44512727 44512748 -56867773 + GC_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr15 44513198 44513233 -56867288 + GC_rich Low_complexity Low_complexity 1 35 0 198 324 0 27 chr15 44513757 44513831 -56866690 - MIR SINE MIR -43 219 148 181 271 0 42 chr15 44514009 44514057 -56866464 + MER5B DNA MER1_type 111 156 -22 437 226 0 0 chr15 44514732 44514825 -56865696 + MIR SINE MIR 170 262 0 223 304 95 19 chr15 44516428 44516586 -56863935 + L2 LINE L2 1656 1825 -1489 529 265 158 10 chr15 44518193 44518389 -56862132 + MIR SINE MIR 11 235 -27 540 285 61 57 chr15 44519273 44519586 -56860935 + L1ME LINE L1 5285 5600 -521 1338 196 83 4 chr15 44519695 44519971 -56860550 + AluJo SINE Alu 1 298 -14 283 357 89 13 chr15 44520221 44520445 -56860076 - L3b LINE CR1 -84 1499 1259 702 156 89 45 chr15 44521087 44521304 -56859217 + L1MB8 LINE L1 5959 6178 0 289 208 0 0 chr15 44524098 44524146 -56856375 - MER112 DNA MER1_type -35 225 178 214 208 75 45 chr15 44524418 44524492 -56856029 - MIR SINE MIR -63 145 75 919 209 166 25 chr15 44524492 44524812 -56855709 - MLT1A1 LTR MaLR 0 365 1 214 208 75 45 chr15 44524812 44524876 -56855645 - MIR SINE MIR -133 75 2 2186 104 3 3 chr15 44525149 44525437 -56855084 + AluSx SINE Alu 1 288 -24 483 238 125 102 chr15 44525698 44526051 -56854470 - L1ME3A LINE L1 -34 6119 5759 454 272 46 51 chr15 44526064 44526259 -56854262 - L1ME3A LINE L1 -2346 3783 3590 314 157 0 29 chr15 44526273 44526343 -56854178 + C-rich Low_complexity Low_complexity 5 72 0 289 209 74 47 chr15 44526431 44526600 -56853921 - L1MEd LINE L1 -4865 1254 1174 2646 153 19 53 chr15 44526682 44527210 -56853311 - L1MC1 LINE L1 -18 6315 5806 2378 191 62 11 chr15 44527234 44527785 -56852736 - L1MC1 LINE L1 -844 5302 4724 2354 73 33 3 chr15 44527804 44528105 -56852416 - AluSq SINE Alu -3 310 1 609 158 58 0 chr15 44528163 44528283 -56852238 - MLT1C LTR MaLR -340 127 1 801 219 123 0 chr15 44528296 44528547 -56851974 - L1MC1 LINE L1 -2447 3699 3418 2445 108 128 10 chr15 44528548 44528585 -56851936 - MLT2A1 LTR ERVL -8 436 405 189 0 0 0 chr15 44528585 44528606 -56851915 + (TA)n Simple_repeat Simple_repeat 1 21 0 2445 108 128 10 chr15 44528606 44528958 -56851563 - MLT2A1 LTR ERVL -39 405 1 1153 236 31 31 chr15 44528958 44529053 -56851468 - L1MC1 LINE L1 -2721 3425 3331 2078 119 3 38 chr15 44529053 44529373 -56851148 - AluSc SINE Alu 0 309 1 1153 236 31 31 chr15 44529373 44529700 -56850821 - L1MC1 LINE L1 -2814 3332 3003 1896 98 0 42 chr15 44530736 44531021 -56849500 + L1PB1 LINE L1 5879 6151 0 2024 157 14 40 chr15 44531059 44531410 -56849111 - MER2 DNA MER2_type -2 342 1 1911 107 70 0 chr15 44531605 44531906 -56848615 - AluSx SINE Alu 0 312 1 2365 62 10 3 chr15 44532319 44532610 -56847911 + AluY SINE Alu 1 293 -18 2292 90 3 26 chr15 44532774 44533086 -56847435 - AluSg SINE Alu -5 305 1 22 0 0 0 chr15 44533136 44533158 -56847363 + AT_rich Low_complexity Low_complexity 1 22 0 209 396 57 0 chr15 44533288 44533447 -56847074 + MIR3 SINE MIR 34 201 -7 451 319 71 0 chr15 44533658 44533840 -56846681 + MIR SINE MIR 67 261 -1 1548 142 26 122 chr15 44534229 44534574 -56845947 + AluJo SINE Alu 1 312 0 2247 86 0 0 chr15 44534595 44534898 -56845623 + AluSc SINE Alu 1 303 0 196 350 19 29 chr15 44534948 44535051 -56845470 - MIR SINE MIR -68 140 39 2321 98 3 0 chr15 44536730 44537027 -56843494 - AluSx SINE Alu -14 298 1 710 219 5 62 chr15 44537496 44537688 -56842833 - L1MC5 LINE L1 -39 7922 7742 372 22 0 0 chr15 44537971 44538016 -56842505 + (TG)n Simple_repeat Simple_repeat 1 45 0 2347 98 0 7 chr15 44538507 44538813 -56841708 + AluSq SINE Alu 1 304 -9 1216 156 39 34 chr15 44540935 44541140 -56839381 + AluJb SINE Alu 86 291 -21 978 151 0 13 chr15 44541829 44541988 -56838533 + AluSc SINE Alu 148 304 -5 2268 88 7 3 chr15 44542085 44542379 -56838142 - AluY SINE Alu -16 295 1 856 242 167 71 chr15 44542463 44543140 -56837381 - HAL1 LINE L1 -74 2433 1692 2327 107 0 0 chr15 44543160 44543470 -56837051 - AluSq SINE Alu -3 310 1 1349 229 122 54 chr15 44543476 44544017 -56836504 - L1ME2 LINE L1 0 6164 5587 1196 54 0 13 chr15 44544095 44544244 -56836277 - L1PA5 LINE L1 0 6154 6008 1245 54 0 0 chr15 44544244 44544393 -56836128 + L1P2 LINE L1 5634 5782 -373 267 313 0 0 chr15 44544470 44544534 -56835987 - MLT1J2 LTR MaLR -120 330 267 321 261 97 17 chr15 44544589 44544739 -56835782 - MLT1J2 LTR MaLR -264 145 1 816 263 89 58 chr15 44544739 44546156 -56834365 - HAL1 LINE L1 -854 1653 4 201 39 0 0 chr15 44546519 44546545 -56833976 + (TAA)n Simple_repeat Simple_repeat 2 27 0 125 14 0 0 chr15 44546545 44546684 -56833837 + AT_rich Low_complexity Low_complexity 1 139 0 303 293 38 9 chr15 44546783 44546889 -56833632 + L2 LINE L2 3164 3272 0 211 372 16 33 chr15 44546954 44547075 -56833446 + MIR SINE MIR 30 148 -114 884 231 0 6 chr15 44547106 44547266 -56833255 - FRAM SINE Alu -21 155 1 187 333 119 23 chr15 44547850 44548027 -56832494 + MIR SINE MIR 18 211 -51 2339 103 0 0 chr15 44548620 44548921 -56831600 - AluSg1 SINE Alu -8 301 1 2239 121 0 13 chr15 44549378 44549692 -56830829 + AluSq SINE Alu 1 310 -3 2324 96 26 3 chr15 44550804 44551107 -56829414 + AluSg SINE Alu 1 310 0 912 256 12 0 chr15 44551944 44552116 -56828405 - FAM SINE Alu -1 174 1 326 301 135 0 chr15 44553161 44553317 -56827204 + MIR SINE MIR 24 200 -62 225 0 0 0 chr15 44553513 44553538 -56826983 + (T)n Simple_repeat Simple_repeat 1 25 0 289 171 14 43 chr15 44554183 44554253 -56826268 - MER117 DNA MER1_type -84 113 46 2384 129 22 25 chr15 44556585 44556950 -56823571 + THE1B LTR MaLR 1 364 0 12699 89 1 18 chr15 44556950 44558557 -56821964 + THE1B-int LTR MaLR 1 1580 0 2270 111 60 29 chr15 44558560 44558910 -56821611 + THE1B LTR MaLR 4 364 0 216 214 0 43 chr15 44559068 44559138 -56821383 + CT-rich Low_complexity Low_complexity 2 68 0 300 311 163 25 chr15 44559474 44559670 -56820851 + HAL1 LINE L1 1561 1783 -724 2777 185 11 17 chr15 44559821 44560296 -56820225 + MER70A LTR ERVL 1 472 0 226 345 0 0 chr15 44560474 44560561 -56819960 + HAL1 LINE L1 2078 2164 -343 2387 113 25 17 chr15 44561031 44561393 -56819128 - THE1C LTR MaLR 0 375 11 180 0 0 0 chr15 44562640 44562660 -56817861 + (CTA)n Simple_repeat Simple_repeat 1 20 0 1347 259 116 25 chr15 44562724 44563283 -56817238 - MLT1L LTR MaLR -5 610 1 266 271 60 99 chr15 44563941 44564243 -56816278 - MLT1I LTR MaLR -22 387 98 653 230 87 6 chr15 44564269 44564430 -56816091 - MER21B LTR ERV1 -54 809 636 1690 232 18 15 chr15 44564510 44564850 -56815671 - MER21B LTR ERV1 -514 349 9 253 261 14 14 chr15 44564854 44564923 -56815598 - MLT1I LTR MaLR -300 109 41 234 333 86 19 chr15 44565040 44565202 -56815319 + L3 LINE CR1 994 1166 -411 2279 87 3 3 chr15 44566834 44567133 -56813388 + AluSg SINE Alu 1 299 -11 576 260 28 39 chr15 44567142 44567323 -56813198 + MIR SINE MIR 10 188 -74 244 289 221 7 chr15 44567374 44567523 -56812998 - MLT1K LTR MaLR -6 582 402 1685 201 66 81 chr15 44567525 44568007 -56812514 + MLT1F LTR MaLR 1 475 -67 1442 162 8 12 chr15 44568007 44568254 -56812267 + MER47A DNA MER2_type 1 246 -120 613 267 34 0 chr15 44568254 44568400 -56812121 - MIR SINE MIR -105 157 7 2110 131 0 0 chr15 44568472 44568763 -56811758 - AluSx SINE Alu -3 309 19 203 256 0 0 chr15 44570486 44570529 -56809992 + CT-rich Low_complexity Low_complexity 3 45 0 213 39 0 0 chr15 44571333 44571359 -56809162 + (T)n Simple_repeat Simple_repeat 1 26 0 491 235 83 30 chr15 44571795 44571927 -56808594 - L2 LINE L2 0 3272 3134 263 174 36 167 chr15 44572502 44572640 -56807881 - L1ME3A LINE L1 -88 6082 5963 307 243 0 14 chr15 44572647 44572717 -56807804 - L1MCa LINE L1 -4352 2074 2006 303 292 11 11 chr15 44572686 44572775 -56807746 - L1MC4 LINE L1 -1339 6983 6895 * 915 230 102 43 chr15 44572807 44573129 -56807392 - L1ME3A LINE L1 -215 5955 5615 532 308 90 30 chr15 44573131 44573393 -56807128 + LTR33 LTR ERVL 2 254 -269 581 263 161 27 chr15 44573876 44574100 -56806421 + MIR SINE MIR 9 262 0 216 0 0 0 chr15 44574165 44574189 -56806332 + (TA)n Simple_repeat Simple_repeat 2 25 0 377 282 19 0 chr15 44575613 44575716 -56804805 + MIR SINE MIR 49 153 -109 213 191 29 59 chr15 44576419 44576487 -56804034 + MIR SINE MIR 197 262 0 222 288 15 0 chr15 44577370 44577436 -56803085 - MIR SINE MIR -111 151 85 5410 15 2 0 chr15 44577848 44578474 -56802047 + L1PA3 LINE L1 5534 6160 0 184 262 226 12 chr15 44578557 44578641 -56801880 - MIR SINE MIR -70 138 37 1859 167 0 10 chr15 44579302 44579613 -56800908 - AluJo SINE Alu -4 308 1 243 236 89 96 chr15 44580149 44580306 -56800215 + MLT1J2 LTR MaLR 1 156 -294 248 231 45 104 chr15 44580406 44580540 -56799981 + MLT1J2 LTR MaLR 281 406 -44 451 345 29 0 chr15 44580565 44580736 -56799785 + MIR SINE MIR 46 221 -41 215 261 15 46 chr15 44580861 44580926 -56799595 + L2 LINE L2 3200 3262 -10 2266 67 3 7 chr15 44581738 44582023 -56798498 + AluY SINE Alu 11 294 -17 1807 152 38 7 chr15 44582050 44582339 -56798182 + AluJo SINE Alu 1 298 -14 322 214 245 0 chr15 44582709 44582807 -56797714 - MER96B DNA MER1_type? 0 417 296 232 121 0 0 chr15 44582833 44582866 -56797655 + MER58A DNA MER1_type 45 77 -30 385 235 189 15 chr15 44582866 44582998 -56797523 + MER5A DNA MER1_type 35 189 0 834 236 11 17 chr15 44584118 44584296 -56796225 - MER5B DNA MER1_type -1 177 1 26 0 0 0 chr15 44584326 44584352 -56796169 + AT_rich Low_complexity Low_complexity 1 26 0 253 254 17 0 chr15 44584371 44584430 -56796091 - MLT1J2 LTR MaLR -21 429 370 555 308 36 10 chr15 44584433 44584628 -56795893 - MLT1J2 LTR MaLR -250 200 1 2178 112 3 0 chr15 44584717 44585013 -56795508 + AluSp SINE Alu 1 297 -16 187 175 35 0 chr15 44585057 44585114 -56795407 + (TA)n Simple_repeat Simple_repeat 2 60 0 2538 65 0 0 chr15 44585151 44585458 -56795063 + AluY SINE Alu 1 307 -4 1456 159 59 4 chr15 44585480 44585719 -56794802 - AluJo SINE Alu -47 265 14 375 297 62 8 chr15 44586351 44586479 -56794042 - L2 LINE L2 0 3272 3138 182 300 22 44 chr15 44586700 44586790 -56793731 + MIR SINE MIR 24 111 -97 290 297 133 8 chr15 44586937 44587065 -56793456 - MIR SINE MIR -95 167 24 2102 148 0 0 chr15 44588267 44588570 -56791951 - AluSx SINE Alu -9 303 1 209 338 42 0 chr15 44589931 44590002 -56790519 - L3 LINE CR1 -18 1559 1486 395 319 96 46 chr15 44590092 44590352 -56790169 - L3 LINE CR1 -85 1492 1220 1047 145 22 6 chr15 44592561 44592740 -56787781 + MER5A DNA MER1_type 8 189 0 2447 74 0 0 chr15 44595557 44595853 -56784668 + AluY SINE Alu 1 296 -15 479 269 76 46 chr15 44597871 44598068 -56782453 - MIR SINE MIR -58 204 2 834 152 11 11 chr15 44598290 44598468 -56782053 + CT-rich Low_complexity Low_complexity 1 178 0 24 0 0 0 chr15 44598567 44598591 -56781930 + AT_rich Low_complexity Low_complexity 1 24 0 349 197 83 38 chr15 44598768 44598900 -56781621 + LTR33 LTR ERVL 1 138 -383 245 121 0 0 chr15 44598896 44598929 -56781592 + LTR33 LTR ERVL 487 519 -2 * 721 256 52 52 chr15 44598979 44599268 -56781253 + L3 LINE CR1 1287 1575 -2 400 371 36 6 chr15 44600854 44601021 -56779500 + MIR3 SINE MIR 35 206 -2 234 0 0 0 chr15 44601135 44601161 -56779360 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1649 133 115 11 chr15 44603619 44603898 -56776623 + AluSg1 SINE Alu 1 308 -1 210 91 0 0 chr15 44605309 44605342 -56775179 + (TCTCC)n Simple_repeat Simple_repeat 4 36 0 24 77 0 0 chr15 44608175 44608227 -56772294 + AT_rich Low_complexity Low_complexity 1 52 0 455 200 0 9 chr15 44609481 44609596 -56770925 + CT-rich Low_complexity Low_complexity 2 115 0 300 219 210 67 chr15 44610514 44610633 -56769888 - MER5B DNA MER1_type -42 136 1 1181 191 31 36 chr15 44610870 44611095 -56769426 - MER58A DNA MER1_type 0 224 1 373 302 38 9 chr15 44611108 44611214 -56769307 + MER5B DNA MER1_type 6 114 -64 2191 113 7 10 chr15 44612034 44612344 -56768177 - AluSx SINE Alu -3 309 1 278 236 16 50 chr15 44612427 44612609 -56767912 + (TATAA)n Simple_repeat Simple_repeat 1 176 0 2137 118 3 3 chr15 44612611 44612900 -56767621 - AluSx SINE Alu -23 289 1 184 292 0 0 chr15 44613294 44613342 -56767179 + L2 LINE L2 3210 3257 -15 337 236 0 0 chr15 44614124 44614196 -56766325 - MER94 DNA DNA -1 133 62 850 147 102 34 chr15 44614825 44615002 -56765519 - MER5A DNA MER1_type 0 189 1 200 247 0 12 chr15 44615166 44615247 -56765274 + GA-rich Low_complexity Low_complexity 4 83 0 1949 166 3 0 chr15 44615740 44616042 -56764479 - AluSx SINE Alu -9 303 1 801 166 0 0 chr15 44616612 44616757 -56763764 + (TG)n Simple_repeat Simple_repeat 2 146 0 497 264 23 0 chr15 44617649 44617778 -56762743 + L2 LINE L2 3180 3311 -2 244 286 149 3 chr15 44621656 44621761 -56758760 - MIR SINE MIR -68 140 60 535 271 0 0 chr15 44623562 44623691 -56756830 - MER94 DNA DNA -2 132 4 196 326 141 22 chr15 44624563 44624655 -56755866 + L3b LINE CR1 1457 1559 -24 1541 172 8 8 chr15 44624734 44625001 -56755520 + AluJo SINE Alu 37 303 -9 356 256 47 0 chr15 44626055 44626141 -56754380 - L1MC4 LINE L1 -1339 6703 6614 356 233 47 0 chr15 44626069 44626155 -56754366 + L1MC4 LINE L1 6614 6703 -1339 38 39 0 0 chr15 44626725 44626777 -56753744 + AT_rich Low_complexity Low_complexity 1 52 0 2011 131 14 46 chr15 44627133 44627483 -56753038 + MER44D DNA MER2_type 1 609 0 1133 118 22 1 chr15 44633732 44633920 -56746601 + L1MC1 LINE L1 5668 5825 -341 2128 123 7 7 chr15 44633922 44634300 -56746221 + AluSq SINE Alu 1 378 -503 2844 125 16 25 chr15 44634300 44634787 -56745734 + L1MC1 LINE L1 5851 6333 0 2128 123 7 7 chr15 44634787 44634803 -56745718 + AluSq SINE Alu 377 881 0 514 273 160 0 chr15 44635052 44635202 -56745319 - MER5A DNA MER1_type -7 182 9 199 0 31 31 chr15 44635390 44635422 -56745099 + (CAA)n Simple_repeat Simple_repeat 2 33 0 327 104 0 0 chr15 44637783 44637831 -56742690 + (TG)n Simple_repeat Simple_repeat 2 49 0 213 424 8 0 chr15 44638262 44638387 -56742134 + L2 LINE L2 3142 3267 -5 192 179 0 0 chr15 44638598 44638637 -56741884 + (TAG)n Simple_repeat Simple_repeat 2 40 0 494 301 15 40 chr15 44638647 44638849 -56741672 - MIR SINE MIR -23 239 44 21 0 0 0 chr15 44639622 44639643 -56740878 + AT_rich Low_complexity Low_complexity 1 21 0 709 207 28 0 chr15 44639912 44640057 -56740464 + MIR3 SINE MIR 37 185 -23 240 167 0 0 chr15 44641801 44641849 -56738672 + CT-rich Low_complexity Low_complexity 1 48 0 240 196 36 36 chr15 44641880 44641936 -56738585 + L3 LINE CR1 1520 1575 -2 275 198 148 12 chr15 44642314 44642395 -56738126 + Charlie7 DNA MER1_type 5 96 -2516 212 118 0 39 chr15 44642490 44642541 -56737980 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 1248 225 79 0 chr15 44642625 44642941 -56737580 - MER58B DNA MER1_type 0 341 1 255 195 134 12 chr15 44644297 44644379 -56736142 + Charlie7 DNA MER1_type 5 96 -2516 212 118 0 39 chr15 44644474 44644525 -56735996 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 1222 228 79 0 chr15 44644609 44644925 -56735596 - MER58B DNA MER1_type 0 341 1 2053 140 0 19 chr15 44647162 44647476 -56733045 + AluSx SINE Alu 1 308 -4 189 328 16 0 chr15 44649253 44649314 -56731207 - MIR SINE MIR -154 108 47 213 381 143 7 chr15 44649369 44649516 -56731005 + L2 LINE L2 3106 3272 0 2542 54 0 0 chr15 44650997 44651291 -56729230 + AluY SINE Alu 1 294 -17 318 54 81 0 chr15 44651291 44651365 -56729156 + (TA)n Simple_repeat Simple_repeat 1 80 0 222 91 0 0 chr15 44654662 44654695 -56725826 + (ATG)n Simple_repeat Simple_repeat 1 33 0 24 0 0 0 chr15 44654823 44654847 -56725674 + AT_rich Low_complexity Low_complexity 1 24 0 264 100 0 0 chr15 44655041 44655081 -56725440 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 24 32 0 0 chr15 44656112 44656143 -56724378 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr15 44656719 44656740 -56723781 + AT_rich Low_complexity Low_complexity 1 21 0 934 121 8 0 chr15 44656740 44656872 -56723649 - AluSp SINE Alu -180 133 1 192 77 0 0 chr15 44658964 44658990 -56721531 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 4006 240 26 14 chr15 44662271 44663387 -56717134 + L1MEc LINE L1 29 1157 -5239 22 35 0 0 chr15 44664069 44664098 -56716423 + AT_rich Low_complexity Low_complexity 1 29 0 24 91 0 0 chr15 44664134 44664200 -56716321 + AT_rich Low_complexity Low_complexity 1 66 0 2328 95 7 0 chr15 44664324 44664619 -56715902 - AluSx SINE Alu -15 297 1 895 238 11 11 chr15 44664832 44665021 -56715500 - MER5A DNA MER1_type 0 189 1 337 286 224 16 chr15 44665085 44665277 -56715244 - MIR SINE MIR -23 239 8 1121 195 167 29 chr15 44665474 44665822 -56714699 + MSTD LTR MaLR 1 396 0 311 296 128 24 chr15 44665917 44666042 -56714479 - L2 LINE L2 -4 3309 3172 253 80 20 20 chr15 44666934 44666953 -56713568 + (TTAAA)n Simple_repeat Simple_repeat 5 23 -31 180 0 0 0 chr15 44666953 44666973 -56713548 + (CATAC)n Simple_repeat Simple_repeat 5 24 0 253 80 20 20 chr15 44666973 44667003 -56713518 + (TTAAA)n Simple_repeat Simple_repeat 22 54 0 851 247 37 29 chr15 44667475 44667718 -56712803 + LTR16A1 LTR ERVL 213 457 0 2188 119 0 10 chr15 44668014 44668324 -56712197 - AluSx SINE Alu -5 307 1 308 222 22 44 chr15 44668407 44668587 -56711934 + (TATAA)n Simple_repeat Simple_repeat 1 176 0 1768 149 7 50 chr15 44668589 44668891 -56711630 - AluSx SINE Alu -23 289 1 287 292 143 39 chr15 44670265 44670419 -56710102 + MIR3 SINE MIR 15 184 -24 209 200 0 0 chr15 44670876 44670911 -56709610 + T-rich Low_complexity Low_complexity 2 36 0 2250 93 0 7 chr15 44671136 44671437 -56709084 - AluY SINE Alu -12 299 1 30 0 0 0 chr15 44676322 44676352 -56704169 + AT_rich Low_complexity Low_complexity 1 30 0 567 257 49 56 chr15 44680939 44681243 -56699278 + MSTD LTR MaLR 8 309 -87 1194 226 16 28 chr15 44681578 44681901 -56698620 + MSTD LTR MaLR 78 396 0 185 333 83 12 chr15 44682029 44682113 -56698408 + MIR SINE MIR 39 128 -134 1958 145 27 3 chr15 44682380 44682549 -56697972 - AluSx SINE Alu -9 303 123 204 40 0 0 chr15 44682549 44682574 -56697947 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1958 145 27 3 chr15 44682574 44682700 -56697821 - AluSx SINE Alu -189 123 1 213 263 118 0 chr15 44683026 44683102 -56697419 - MIR3 SINE MIR -5 203 119 21 36 0 0 chr15 44683122 44683150 -56697371 + AT_rich Low_complexity Low_complexity 1 28 0 2483 72 3 0 chr15 44683374 44683681 -56696840 + AluSg SINE Alu 3 310 0 217 300 220 0 chr15 44685159 44685259 -56695262 + L2 LINE L2 3149 3270 -2 2081 148 0 13 chr15 44686914 44687224 -56693297 + AluSx SINE Alu 1 306 -6 279 158 73 0 chr15 44690784 44690949 -56689572 + (TA)n Simple_repeat Simple_repeat 1 177 0 261 56 0 0 chr15 44693642 44693678 -56686843 - L1P4 LINE L1 -381 5782 5747 437 226 188 8 chr15 44693940 44694073 -56686448 - MER5A DNA MER1_type 0 189 33 184 340 64 51 chr15 44695167 44695323 -56685198 - MIR3 SINE MIR -39 169 12 1933 186 54 50 chr15 44695777 44696273 -56684248 + MLT1D LTR MaLR 6 503 -2 21 0 0 0 chr15 44697055 44697076 -56683445 + AT_rich Low_complexity Low_complexity 1 21 0 1172 284 99 65 chr15 44697528 44698284 -56682237 - L2 LINE L2 -508 2806 2025 243 314 41 50 chr15 44699119 44699240 -56681281 + L2 LINE L2 3143 3262 -10 384 113 0 0 chr15 44700092 44700154 -56680367 - L1MA8 LINE L1 -6 6285 6224 311 177 0 0 chr15 44700811 44700873 -56679648 - L1MA8 LINE L1 -4 6287 6226 2626 97 10 162 chr15 44703037 44703664 -56676857 + MER1A DNA MER1_type 1 533 0 24 32 0 0 chr15 44703849 44703880 -56676641 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr15 44704673 44704705 -56675816 + AT_rich Low_complexity Low_complexity 1 32 0 2135 110 0 13 chr15 44706271 44706570 -56673951 - AluSx SINE Alu -17 295 1 368 317 113 0 chr15 44706820 44706962 -56673559 - L2 LINE L2 -556 2758 2601 1022 283 46 13 chr15 44707985 44708377 -56672144 + LTR16A LTR ERVL 1 405 -45 209 339 15 0 chr15 44709555 44709620 -56670901 - MIR SINE MIR -22 240 175 380 241 42 78 chr15 44711549 44711715 -56668806 - MIR3 SINE MIR -16 192 33 231 235 0 0 chr15 44713591 44713642 -56666879 + (TA)n Simple_repeat Simple_repeat 1 51 0 384 152 0 0 chr15 44713642 44713708 -56666813 + (TG)n Simple_repeat Simple_repeat 1 66 0 235 316 146 29 chr15 44713765 44713936 -56666585 + MIR3 SINE MIR 10 200 -8 881 280 75 33 chr15 44716133 44716558 -56663963 + L2 LINE L2 2816 3258 -55 198 0 0 0 chr15 44717298 44717320 -56663201 + (CAA)n Simple_repeat Simple_repeat 1 22 0 250 290 48 76 chr15 44719119 44719264 -56661257 + MIR SINE MIR 81 221 -41 282 319 50 0 chr15 44719302 44719421 -56661100 - L2 LINE L2 0 3313 3189 286 329 19 19 chr15 44720118 44720276 -56660245 - MARNA DNA Mariner -236 350 193 409 199 50 50 chr15 44721500 44721641 -56658880 + AluYa8 SINE Alu 2 142 -168 320 351 7 14 chr15 44722522 44722670 -56657851 + MIR SINE MIR 46 192 -70 222 261 15 46 chr15 44722821 44722886 -56657635 + L2 LINE L2 3200 3262 -10 2118 87 14 10 chr15 44723700 44723988 -56656533 + AluY SINE Alu 11 299 -12 243 290 0 0 chr15 44724097 44724159 -56656362 + (TA)n Simple_repeat Simple_repeat 2 63 0 26 30 0 0 chr15 44724221 44724254 -56656267 + AT_rich Low_complexity Low_complexity 1 33 0 231 36 0 0 chr15 44724261 44724289 -56656232 + (TG)n Simple_repeat Simple_repeat 2 29 0 278 206 59 0 chr15 44726436 44726504 -56654017 - MER113 DNA MER1_type? -428 93 22 477 290 35 35 chr15 44727167 44727426 -56653095 - L1ME4a LINE L1 -168 5953 5695 23 0 0 0 chr15 44727522 44727545 -56652976 + AT_rich Low_complexity Low_complexity 1 23 0 412 219 6 134 chr15 44729418 44729582 -56650939 - MER5B DNA MER1_type 0 178 36 279 0 0 0 chr15 44729610 44729641 -56650880 + (TG)n Simple_repeat Simple_repeat 2 32 0 467 273 52 16 chr15 44730288 44730482 -56650039 + L1MC5 LINE L1 7271 7471 -490 299 252 161 7 chr15 44730592 44730732 -56649789 + L1MC4 LINE L1 7624 7896 -146 213 214 43 0 chr15 44730732 44730802 -56649719 + (TA)n Simple_repeat Simple_repeat 2 74 0 249 292 77 0 chr15 44730802 44730932 -56649589 + L1MC4 LINE L1 7902 8041 -1 1317 124 103 4 chr15 44732306 44732548 -56647973 + L1MB3 LINE L1 5918 6183 0 1490 164 65 11 chr15 44732558 44732847 -56647674 + AluJo SINE Alu 6 308 0 767 326 136 23 chr15 44732944 44733767 -56646754 - L2 LINE L2 -1 3312 2377 486 0 0 0 chr15 44734533 44734587 -56645934 + (CA)n Simple_repeat Simple_repeat 1 54 0 269 282 55 27 chr15 44736862 44736972 -56643549 + MIR3 SINE MIR 4 116 -92 262 283 75 19 chr15 44737669 44737775 -56642746 + L2 LINE L2 3178 3289 -24 279 0 0 0 chr15 44737781 44737812 -56642709 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 185 262 115 0 chr15 44737996 44738057 -56642464 + MIR SINE MIR 159 226 -36 4926 94 28 0 chr15 44738331 44739047 -56641474 - L1PA13 LINE L1 0 6163 5428 2042 135 3 0 chr15 44739085 44739381 -56641140 - AluJo SINE Alu -6 306 10 386 264 45 39 chr15 44739382 44739537 -56640984 + MLT1J LTR MaLR 356 511 0 653 277 40 17 chr15 44740758 44740935 -56639586 - MIR SINE MIR -70 192 12 347 342 18 0 chr15 44740965 44741079 -56639442 - MIR SINE MIR -70 138 23 343 210 37 12 chr15 44741606 44741687 -56638834 + MIR SINE MIR 73 155 -107 188 368 36 104 chr15 44742238 44742545 -56637976 + L2 LINE L2 2978 3263 -9 294 356 139 25 chr15 44743476 44743678 -56636843 + MIR SINE MIR 8 232 -30 455 319 98 12 chr15 44744033 44744196 -56636325 - MIR3 SINE MIR -30 178 2 509 213 110 7 chr15 44747118 44747254 -56633267 + MIR SINE MIR 63 212 -50 409 283 0 18 chr15 44747690 44747803 -56632718 + MIR SINE MIR 81 191 -71 263 263 0 0 chr15 44747856 44747913 -56632608 - MIR SINE MIR -69 139 83 21 0 0 0 chr15 44748184 44748205 -56632316 + AT_rich Low_complexity Low_complexity 1 21 0 391 327 83 6 chr15 44748738 44748906 -56631615 - MER5A DNA MER1_type -8 181 1 288 312 52 39 chr15 44748906 44749053 -56631468 + MIR3 SINE MIR 32 180 -28 223 222 0 123 chr15 44749806 44749887 -56630634 + L2 LINE L2 3242 3312 -1 372 260 64 20 chr15 44749966 44750083 -56630438 - L2 LINE L2 -16 3297 3134 25 51 0 0 chr15 44750356 44750395 -56630126 + AT_rich Low_complexity Low_complexity 1 39 0 33 0 0 0 chr15 44751376 44751409 -56629112 + AT_rich Low_complexity Low_complexity 1 33 0 217 336 29 0 chr15 44751773 44751877 -56628644 - MIR SINE MIR -26 236 130 216 318 15 0 chr15 44751990 44752056 -56628465 + L2 LINE L2 3246 3312 -1 465 209 29 29 chr15 44752125 44752264 -56628257 - L1ME4a LINE L1 -4 6117 5979 454 242 0 0 chr15 44753492 44753587 -56626934 - MIR3 SINE MIR -6 202 108 483 247 139 36 chr15 44753743 44753909 -56626612 + MER5A DNA MER1_type 4 186 -3 647 220 187 26 chr15 44753936 44754209 -56626312 + MER5C DNA MER1_type 8 324 0 6811 209 57 9 chr15 44754267 44754817 -56625704 + L1MB7 LINE L1 3620 4142 -2042 959 0 9 0 chr15 44754817 44754928 -56625593 + (GAAA)n Simple_repeat Simple_repeat 3 114 0 6811 209 57 9 chr15 44754928 44756831 -56623690 + L1MB7 LINE L1 4142 6184 0 296 309 95 18 chr15 44757356 44757524 -56622997 - L3 LINE CR1 -10 1567 1387 21 36 0 0 chr15 44760319 44760347 -56620174 + AT_rich Low_complexity Low_complexity 1 28 0 311 327 105 26 chr15 44760928 44761081 -56619440 - L2 LINE L2 -1 3271 3107 348 64 0 0 chr15 44762149 44762196 -56618325 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1341 181 12 0 chr15 44762196 44762439 -56618082 - L1PB4 LINE L1 -19 6137 5892 1662 117 140 0 chr15 44762440 44762632 -56617889 + L1PB4 LINE L1 5560 5724 -432 396 0 0 0 chr15 44762632 44762676 -56617845 + (CA)n Simple_repeat Simple_repeat 2 45 0 1662 117 140 0 chr15 44762676 44762783 -56617738 + L1PB4 LINE L1 5724 5901 -255 251 196 0 18 chr15 44763382 44763438 -56617083 + GA-rich Low_complexity Low_complexity 2 56 0 198 118 0 0 chr15 44763469 44763503 -56617018 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 392 271 44 83 chr15 44763505 44763734 -56616787 - L2 LINE L2 -16 3297 3078 813 72 0 0 chr15 44765510 44765625 -56614896 - L1M4 LINE L1 -496 5659 5563 3546 24 0 0 chr15 44765625 44766039 -56614482 + L1PA2 LINE L1 5742 6155 0 417 248 124 0 chr15 44768136 44768257 -56612264 - L2 LINE L2 0 3313 3178 290 253 168 0 chr15 44769237 44769332 -56611189 - L2 LINE L2 0 3272 3162 323 258 52 21 chr15 44770114 44770211 -56610310 + L2 LINE L2 3137 3236 -36 735 289 11 0 chr15 44771139 44771329 -56609192 - MIR SINE MIR -3 259 68 24 32 0 0 chr15 44772864 44772895 -56607626 + AT_rich Low_complexity Low_complexity 1 31 0 230 211 18 0 chr15 44773971 44774028 -56606493 + MER103 DNA DNA 24 81 -85 1327 154 110 3 chr15 44775120 44775412 -56605109 + MER33 DNA MER1_type 2 324 0 2403 70 3 13 chr15 44776625 44776937 -56603584 - AluY SINE Alu -2 309 1 507 312 47 29 chr15 44778163 44778503 -56602018 + MARNA DNA Mariner 193 538 -48 638 314 53 4 chr15 44778868 44779113 -56601408 + MIR SINE MIR 3 259 -3 186 367 18 46 chr15 44780692 44780801 -56599720 - L2 LINE L2 -35 3237 3132 290 361 19 0 chr15 44782680 44782788 -56597733 + MIR SINE MIR 82 191 -71 1041 298 57 21 chr15 44784280 44784700 -56595821 + LTR16B LTR ERVL 30 464 0 271 330 11 11 chr15 44784805 44784899 -56595622 - MIR3 SINE MIR -7 201 108 797 286 16 33 chr15 44785184 44785429 -56595092 + MIR SINE MIR 19 259 -3 307 309 49 57 chr15 44785535 44785781 -56594740 + L2 LINE L2 2827 3070 -202 2070 111 81 23 chr15 44785827 44786171 -56594350 + THE1B LTR MaLR 1 364 0 341 257 87 22 chr15 44786250 44786433 -56594088 + L1ME4a LINE L1 5725 5919 -202 265 318 110 13 chr15 44786709 44786863 -56593658 - L2 LINE L2 -876 2438 2270 2029 109 34 10 chr15 44787444 44787737 -56592784 + AluSx SINE Alu 1 300 -12 281 146 21 0 chr15 44789022 44789070 -56591451 - L2 LINE L2 0 3272 3224 194 254 36 0 chr15 44791017 44791072 -56589449 - L2 LINE L2 -1 3271 3215 195 42 0 0 chr15 44791566 44791590 -56588931 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 448 86 57 0 chr15 44791962 44792032 -56588489 + LTR2 LTR ERV1 373 446 -3 339 241 128 0 chr15 44792108 44792241 -56588280 + L1MD1 LINE L1 4563 4712 -1434 239 170 0 0 chr15 44792259 44792306 -56588215 + Alu SINE Alu 256 302 0 4687 174 16 43 chr15 44792306 44792616 -56587905 + L1MD1 LINE L1 5022 5339 -903 1881 162 0 7 chr15 44792616 44792906 -56587615 + AluSx SINE Alu 1 288 -24 4687 174 16 43 chr15 44792906 44793799 -56586722 + L1MD1 LINE L1 5339 6192 -50 1580 192 117 17 chr15 44793799 44794159 -56586362 + MSTD LTR MaLR 1 396 0 4687 174 16 43 chr15 44794159 44794204 -56586317 + L1MD1 LINE L1 6192 6237 -5 312 167 0 0 chr15 44794341 44794413 -56586108 + (TA)n Simple_repeat Simple_repeat 2 73 0 1781 155 31 31 chr15 44794413 44794768 -56585753 + MLT1A1 LTR MaLR 4 358 -7 1549 239 21 26 chr15 44796392 44796781 -56583740 - LTR16C LTR ERVL -7 484 98 235 240 173 13 chr15 44797425 44797500 -56583021 - L2 LINE L2 -5 3267 3181 22 0 0 0 chr15 44797718 44797740 -56582781 + AT_rich Low_complexity Low_complexity 1 22 0 235 278 157 26 chr15 44797925 44798040 -56582481 + MIR3 SINE MIR 38 167 -41 2395 98 0 0 chr15 44798282 44798588 -56581933 - AluY SINE Alu -5 306 1 219 234 43 0 chr15 44799289 44799336 -56581185 + MIR3 SINE MIR 139 187 -21 2225 109 0 0 chr15 44800674 44800968 -56579553 + AluSx SINE Alu 1 294 -18 250 222 0 71 chr15 44802572 44802671 -56577850 + HAL1b LINE L1 749 840 -508 21 0 0 0 chr15 44803814 44803835 -56576686 + AT_rich Low_complexity Low_complexity 1 21 0 603 309 14 24 chr15 44803856 44804066 -56576455 - MIR SINE MIR -48 214 7 2357 98 0 0 chr15 44804195 44804501 -56576020 - AluSg SINE Alu -4 306 1 3700 114 2 21 chr15 44805653 44806188 -56574333 + MER1A DNA MER1_type 3 527 0 195 129 0 0 chr15 44806474 44806505 -56574016 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 631 90 10 0 chr15 44806817 44806917 -56573604 + L1PA15 LINE L1 6065 6165 0 346 294 152 66 chr15 44807366 44807563 -56572958 - MIR SINE MIR -1 261 48 286 239 70 0 chr15 44807750 44807821 -56572700 - L2 LINE L2 -9 3304 3229 4912 173 45 15 chr15 44807822 44808735 -56571786 + L1MC3 LINE L1 6701 7650 -135 2503 58 0 32 chr15 44808735 44809048 -56571473 + AluY SINE Alu 1 303 -8 4912 173 45 15 chr15 44809048 44809184 -56571337 + L1MC3 LINE L1 7650 7781 -4 240 289 61 96 chr15 44809244 44809441 -56571080 - L2 LINE L2 -75 3197 3008 453 76 0 0 chr15 44810972 44811038 -56569483 + (CA)n Simple_repeat Simple_repeat 1 66 0 1298 154 9 14 chr15 44813094 44813315 -56567206 + AluJo SINE Alu 85 304 -8 329 266 57 8 chr15 44813926 44814050 -56566471 - MIR SINE MIR -51 211 82 923 204 66 69 chr15 44815760 44816079 -56564442 + L1MC5 LINE L1 7120 7437 -524 290 197 0 61 chr15 44816092 44816158 -56564363 + MER5C DNA MER1_type 15 76 -248 223 209 23 0 chr15 44816282 44816325 -56564196 - MER5C DNA MER1_type -248 76 33 1209 212 48 28 chr15 44816360 44816757 -56563764 + L1MC5 LINE L1 7452 7856 -105 732 112 0 0 chr15 44817699 44817797 -56562724 + AluY SINE Alu 213 310 -1 578 296 37 5 chr15 44819437 44819626 -56560895 - MIR SINE MIR -34 228 34 186 208 0 57 chr15 44820949 44821002 -56559519 + MIR SINE MIR 89 138 -70 360 259 17 17 chr15 44821776 44821892 -56558629 + GA-rich Low_complexity Low_complexity 2 117 0 414 0 0 0 chr15 44821893 44821939 -56558582 + (CA)n Simple_repeat Simple_repeat 1 46 0 369 246 175 47 chr15 44823119 44823330 -56557191 + MLT1G LTR MaLR 37 274 -281 218 308 67 0 chr15 44823471 44823575 -56556946 + MIR SINE MIR 31 141 -67 667 167 42 28 chr15 44823818 44823962 -56556559 + MLT1G LTR MaLR 445 590 0 183 351 117 32 chr15 44824088 44824370 -56556151 + L2 LINE L2 2454 2759 -555 251 323 50 10 chr15 44824468 44824567 -56555954 + MER91C DNA MER1_type 25 127 -13 253 236 136 73 chr15 44824727 44824837 -56555684 - L2 LINE L2 -10 3303 3187 1053 203 82 0 chr15 44824860 44825067 -56555454 - MER58A DNA MER1_type 0 224 1 1133 148 0 0 chr15 44825073 44825235 -56555286 - FRAM SINE Alu -14 162 1 429 281 115 26 chr15 44825439 44825631 -56554890 + MIR SINE MIR 2 210 -52 512 303 14 7 chr15 44826256 44826401 -56554120 + MIR SINE MIR 102 247 -15 300 267 164 42 chr15 44828967 44829144 -56551377 + L1MC4a LINE L1 5613 5834 -1974 1906 122 39 3 chr15 44829144 44829430 -56551091 + AluSx SINE Alu 5 300 -12 300 267 164 42 chr15 44829430 44829514 -56551007 + L1MC4a LINE L1 5834 5906 -1902 243 290 0 0 chr15 44829539 44829601 -56550920 + (TA)n Simple_repeat Simple_repeat 2 63 0 26 30 0 0 chr15 44829663 44829696 -56550825 + AT_rich Low_complexity Low_complexity 1 33 0 231 36 0 0 chr15 44829704 44829732 -56550789 + (TG)n Simple_repeat Simple_repeat 2 29 0 195 250 225 0 chr15 44833950 44834030 -56546491 + MIR SINE MIR 87 184 -78 259 320 22 108 chr15 44834341 44834563 -56545958 - L2 LINE L2 -73 3199 2997 415 251 12 135 chr15 44834577 44834644 -56545877 - MER5B DNA MER1_type -1 177 140 1918 152 0 26 chr15 44834644 44834954 -56545567 + AluSx SINE Alu 5 306 -6 415 251 12 135 chr15 44834954 44835049 -56545472 - MER5B DNA MER1_type -38 140 35 225 292 0 42 chr15 44836037 44836109 -56544412 - L2 LINE L2 0 3313 3245 547 100 12 12 chr15 44836142 44836222 -56544299 - MADE1 DNA Mariner 0 80 1 1787 84 0 4 chr15 44836381 44836607 -56543914 - AluY SINE Alu -6 305 81 695 263 86 27 chr15 44837517 44837952 -56542569 + MLT1H LTR MaLR 3 546 -3 222 294 55 40 chr15 44837955 44838086 -56542435 - MIR SINE MIR -63 145 39 286 269 28 28 chr15 44838357 44838465 -56542056 + L2 LINE L2 3201 3308 -5 27 81 0 0 chr15 44839225 44839287 -56541234 + AT_rich Low_complexity Low_complexity 1 62 0 225 231 333 34 chr15 44839909 44840026 -56540495 - MER58 DNA MER1_type 0 2420 2269 * 862 211 27 11 chr15 44840017 44840202 -56540319 - MER58 DNA MER1_type -2232 188 1 204 40 0 0 chr15 44840291 44840316 -56540205 + (GGGTG)n Simple_repeat Simple_repeat 5 29 0 285 239 108 31 chr15 44840319 44840449 -56540072 - L2 LINE L2 -217 3055 2916 451 293 33 56 chr15 44841017 44841187 -56539334 + L2 LINE L2 2175 2341 -973 1615 241 90 44 chr15 44841187 44841752 -56538769 + MLT1E LTR MaLR 1 591 -2 451 293 33 56 chr15 44841752 44841796 -56538725 + L2 LINE L2 2341 2384 -930 450 306 30 8 chr15 44842183 44842317 -56538204 + MIR3 SINE MIR 20 156 -52 379 252 52 43 chr15 44842348 44842463 -56538058 - MER5A DNA MER1_type -26 163 48 229 331 66 37 chr15 44842357 44842493 -56538028 + MER5A DNA MER1_type 46 185 -4 * 341 294 33 6 chr15 44845177 44845343 -56535178 + LTR16A1 LTR ERVL 9 176 -274 2541 271 73 21 chr15 44845398 44846476 -56534045 + L1M4 LINE L1 3253 4386 -1760 2260 253 38 78 chr15 44846505 44847331 -56533190 + L1ME LINE L1 32 744 -5336 1820 109 35 0 chr15 44847331 44847588 -56532933 + L1PA16 LINE L1 5900 6165 -1 2260 253 38 78 chr15 44847588 44848297 -56532224 + L1ME LINE L1 744 1480 -4600 1061 216 36 4 chr15 44848321 44848599 -56531922 + L1ME LINE L1 4340 4626 -1454 457 162 0 0 chr15 44848593 44848667 -56531854 - L1M4 LINE L1 -3557 2589 2516 * 1436 166 40 12 chr15 44849107 44849360 -56531161 + AluJo SINE Alu 40 299 -13 666 179 135 13 chr15 44849373 44849570 -56530951 + L1ME LINE L1 5171 5391 -713 254 337 4 20 chr15 44850498 44850620 -56529901 + MIR SINE MIR 59 181 -27 1787 210 72 47 chr15 44851599 44852150 -56528371 - MLT1F1 LTR MaLR 0 567 1 185 264 42 28 chr15 44852853 44852925 -56527596 - MIR3 SINE MIR -3 205 133 324 102 0 0 chr15 44853074 44853123 -56527398 + (CA)n Simple_repeat Simple_repeat 2 50 0 2222 100 0 26 chr15 44853179 44853490 -56527031 + AluSc SINE Alu 1 303 -6 428 256 51 98 chr15 44853640 44853855 -56526666 - L2 LINE L2 -656 2658 2454 305 307 29 0 chr15 44853876 44854016 -56526505 + L1MC5 LINE L1 7758 7901 -60 625 258 201 11 chr15 44854071 44854424 -56526097 + L1ME4a LINE L1 5628 6047 -74 2062 133 3 3 chr15 44855706 44856014 -56524507 - AluSx SINE Alu -4 308 1 320 0 0 24 chr15 44856866 44856926 -56523595 + (TA)n Simple_repeat Simple_repeat 1 98 0 320 0 0 24 chr15 44856926 44856967 -56523554 + (TA)n Simple_repeat Simple_repeat 2 41 0 482 239 34 0 chr15 44858112 44858229 -56522292 + L2 LINE L2 3192 3312 -1 186 350 0 0 chr15 44859015 44859075 -56521446 - L3 LINE CR1 -2 1575 1516 379 239 102 62 chr15 44859313 44859489 -56521032 + MIR3 SINE MIR 19 201 -7 262 288 88 0 chr15 44859483 44859563 -56520958 - MIR SINE MIR -106 102 16 * 558 333 104 40 chr15 44860065 44860536 -56519985 + L2 LINE L2 2813 3313 0 239 263 105 11 chr15 44860532 44860627 -56519894 - MIR3 SINE MIR -102 106 3 * 454 253 82 7 chr15 44861241 44861387 -56519134 + MIR SINE MIR 97 253 -9 436 210 25 0 chr15 44861702 44861783 -56518738 + MER5A DNA MER1_type 30 112 -77 268 242 8 83 chr15 44861834 44861954 -56518567 + MIR SINE MIR 108 218 -44 273 57 0 0 chr15 44863216 44863251 -56517270 + (TG)n Simple_repeat Simple_repeat 2 36 0 424 178 74 52 chr15 44863662 44863797 -56516724 - L1MC4 LINE L1 -1 8041 7904 428 0 19 0 chr15 44863802 44863854 -56516667 + (CA)n Simple_repeat Simple_repeat 1 53 0 414 328 8 8 chr15 44864887 44865012 -56515509 - MIR SINE MIR -112 150 26 22 56 0 0 chr15 44866580 44866616 -56513905 + AT_rich Low_complexity Low_complexity 1 36 0 27 62 0 0 chr15 44866709 44866757 -56513764 + AT_rich Low_complexity Low_complexity 1 48 0 1444 162 50 20 chr15 44867106 44867409 -56513112 - Tigger3b DNA MER2_type 0 1232 921 3787 132 73 38 chr15 44867409 44868198 -56512323 - Tigger3b DNA MER2_type -413 818 2 1318 217 46 15 chr15 44869058 44869636 -56510885 - L1MCa LINE L1 -4066 2360 1710 * 21982 144 24 21 chr15 44869634 44871912 -56508609 + L1MA3 LINE L1 11 2282 -5442 2463 92 0 0 chr15 44871912 44872218 -56508303 - AluSq SINE Alu -7 306 1 21982 144 24 21 chr15 44872218 44874545 -56505976 + L1MA3 LINE L1 2282 4602 -3122 2003 145 3 0 chr15 44874545 44874835 -56505686 + AluSx SINE Alu 1 291 -21 21982 144 24 21 chr15 44874835 44875067 -56505454 + L1MA3 LINE L1 4602 4832 -2892 1401 96 20 5 chr15 44875067 44875265 -56505256 + L1PA10 LINE L1 5963 6164 -4 21982 144 24 21 chr15 44875265 44878120 -56502401 + L1MA3 LINE L1 4832 7723 -1 716 187 122 54 chr15 44878134 44878469 -56502052 - L1MCa LINE L1 -4798 1628 1196 185 0 40 0 chr15 44878472 44878497 -56502024 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 345 165 51 0 chr15 44878540 44878619 -56501902 - L1MCa LINE L1 -5239 1187 1105 1744 112 9 0 chr15 44879390 44879622 -56500899 + AluSx SINE Alu 61 294 -18 1204 250 14 17 chr15 44879929 44880221 -56500300 + AluJb SINE Alu 1 291 -11 3011 261 130 35 chr15 44880260 44881519 -56499002 + L2 LINE L2 1632 3066 -247 1866 146 167 14 chr15 44881519 44881890 -56498631 + MSTA LTR MaLR 1 428 0 3011 261 130 35 chr15 44881890 44882163 -56498358 + L2 LINE L2 3066 3312 -1 418 298 70 35 chr15 44882435 44882606 -56497915 + MIR SINE MIR 10 186 -76 2211 267 88 35 chr15 44882774 44883776 -56496745 + L2 LINE L2 1966 3031 -282 1388 175 172 21 chr15 44883776 44884148 -56496373 + MSTA LTR MaLR 1 428 0 425 292 77 30 chr15 44884488 44884656 -56495865 + MIR SINE MIR 10 185 -77 207 345 58 0 chr15 44885343 44885430 -56495091 - L2 LINE L2 -57 3215 3124 243 243 97 0 chr15 44885594 44885697 -56494824 + MER112 DNA MER1_type 147 259 -1 250 128 0 0 chr15 44885913 44885952 -56494569 + MLT1J LTR MaLR 97 135 -376 2291 125 11 13 chr15 44886171 44886547 -56493974 + THE1C LTR MaLR 1 375 0 694 312 60 40 chr15 44886679 44887080 -56493441 - LTR16A1 LTR ERVL 0 457 49 495 325 30 43 chr15 44888140 44888224 -56492297 + L1 LINE L1 3722 3806 -2340 2400 94 0 0 chr15 44888224 44888523 -56491998 - AluSg SINE Alu -11 299 1 495 325 30 43 chr15 44888523 44888669 -56491852 + L1 LINE L1 3806 3949 -2197 2247 102 3 0 chr15 44888717 44889012 -56491509 + AluSp SINE Alu 2 297 -16 201 74 0 0 chr15 44889087 44889114 -56491407 + (A)n Simple_repeat Simple_repeat 1 27 0 1693 172 35 7 chr15 44889116 44889401 -56491120 + AluJb SINE Alu 1 293 -19 395 287 63 92 chr15 44889589 44889865 -56490656 + L1 LINE L1 4051 4333 -1813 2088 141 0 0 chr15 44889865 44890170 -56490351 - AluSx SINE Alu -7 305 1 395 287 63 92 chr15 44890170 44890400 -56490121 + L1 LINE L1 4333 4568 -1578 2211 126 0 3 chr15 44891171 44891480 -56489041 + AluSg SINE Alu 1 308 -2 200 200 25 0 chr15 44891781 44891821 -56488700 + MIR SINE MIR 192 232 -30 191 216 0 0 chr15 44893004 44893041 -56487480 - MIR SINE MIR -10 252 216 302 304 93 44 chr15 44893199 44893403 -56487118 + HAL1 LINE L1 982 1195 -1312 527 337 102 44 chr15 44893431 44893513 -56487008 + L1MEd LINE L1 4 80 -6039 201 39 0 0 chr15 44893513 44893539 -56486982 + (TA)n Simple_repeat Simple_repeat 2 27 0 527 337 102 44 chr15 44893539 44893800 -56486721 + L1MEd LINE L1 80 367 -5752 360 0 0 0 chr15 44893936 44893976 -56486545 + (CA)n Simple_repeat Simple_repeat 1 40 0 1573 95 0 0 chr15 44894143 44894364 -56486157 + L1PA13 LINE L1 5942 6162 -1 979 258 72 30 chr15 44894398 44894997 -56485524 + L1MEd LINE L1 718 1378 -4862 317 269 61 20 chr15 44895029 44895273 -56485248 + L1M2 LINE L1 2204 2334 -875 11884 165 35 46 chr15 44895330 44898306 -56482215 - L1MA6 LINE L1 0 6300 3385 1778 171 0 27 chr15 44898306 44898605 -56481916 - AluJo SINE Alu -21 291 1 11884 165 35 46 chr15 44898605 44899427 -56481094 - L1MA6 LINE L1 -2915 3385 2555 484 256 145 12 chr15 44899494 44899893 -56480628 + L1M2 LINE L1 2962 3413 -3435 368 307 67 13 chr15 44900042 44900192 -56480329 - L3 LINE CR1 -7 1570 1413 1003 237 55 129 chr15 44900636 44900695 -56479826 - HAL1 LINE L1 -111 2396 2334 1863 42 15 42 chr15 44900695 44900957 -56479564 - L1PA13 LINE L1 0 6163 5909 1003 237 55 129 chr15 44900957 44900983 -56479538 - HAL1 LINE L1 -173 2334 2308 1911 156 3 0 chr15 44900983 44901284 -56479237 - AluJb SINE Alu -10 302 1 1003 237 55 129 chr15 44901284 44902023 -56478498 - HAL1 LINE L1 -199 2308 1657 1950 135 4 7 chr15 44902023 44902304 -56478217 - AluJb SINE Alu -30 282 3 1003 237 55 129 chr15 44902304 44902491 -56478030 - HAL1 LINE L1 -850 1657 1458 525 149 0 0 chr15 44902616 44902703 -56477818 + AluJ/FRAM SINE Alu 216 302 -10 24 0 0 0 chr15 44902703 44902727 -56477794 + AT_rich Low_complexity Low_complexity 1 24 0 227 247 108 0 chr15 44902774 44902867 -56477654 + L1ME4a LINE L1 5968 6070 -51 1940 172 0 0 chr15 44903062 44903365 -56477156 - AluJb SINE Alu -9 303 1 363 291 45 77 chr15 44903365 44903585 -56476936 - L1MC4 LINE L1 -3 8039 7827 339 233 12 0 chr15 44903691 44903777 -56476744 - L1ME2 LINE L1 -30 6134 6048 268 232 28 73 chr15 44903778 44903955 -56476566 - L1ME LINE L1 -4385 1876 1708 197 143 48 0 chr15 44903995 44904037 -56476484 + CT-rich Low_complexity Low_complexity 4 47 0 3034 267 46 36 chr15 44904045 44904286 -56476235 - L1ME LINE L1 -4670 1410 1173 2435 91 0 0 chr15 44904286 44904594 -56475927 + AluY SINE Alu 3 310 -1 3034 267 46 36 chr15 44904594 44905752 -56474769 - L1ME LINE L1 -4907 1173 7 299 317 61 0 chr15 44906213 44906295 -56474226 + MIR3 SINE MIR 83 169 -39 2486 74 0 0 chr15 44906298 44906595 -56473926 - AluSg SINE Alu -13 297 1 226 267 0 40 chr15 44907723 44907798 -56472723 + MER5C DNA MER1_type 253 324 0 624 279 10 25 chr15 44907866 44908070 -56472451 - LTR33 LTR ERVL -305 216 16 189 0 0 0 chr15 44908149 44908170 -56472351 + (TTA)n Simple_repeat Simple_repeat 1 21 0 495 268 7 7 chr15 44908428 44908566 -56471955 + MLT2F LTR ERVL 10 147 -516 * 578 225 17 28 chr15 44908562 44908740 -56471781 + MLT1E3 LTR MaLR 46 221 -403 369 292 53 67 chr15 44908583 44908939 -56471582 + MLT2C1 LTR ERVL 45 395 -2 * 3250 144 50 3 chr15 44911703 44912305 -56468216 - LTR34 LTR ERV1 0 699 70 252 263 0 0 chr15 44912298 44912355 -56468166 - MLT1L LTR MaLR -231 384 328 * 421 259 43 7 chr15 44912437 44912576 -56467945 - MLT1L LTR MaLR -337 278 135 267 325 50 8 chr15 44913113 44913233 -56467288 + MIR SINE MIR 125 249 -13 632 176 54 0 chr15 44914291 44914439 -56466082 + L1MC3 LINE L1 7620 7775 -10 499 315 64 15 chr15 44915451 44915654 -56464867 + MIR SINE MIR 47 259 -3 2404 96 3 0 chr15 44916119 44916431 -56464090 - AluSq SINE Alu 0 313 1 383 176 45 182 chr15 44917474 44917523 -56462998 + L1MC4 LINE L1 7699 7753 -289 1547 179 20 36 chr15 44917523 44917824 -56462697 + AluJo SINE Alu 1 296 -16 383 176 45 182 chr15 44917824 44918104 -56462417 + L1MC4 LINE L1 7753 7983 -59 361 242 131 81 chr15 44918665 44918863 -56461658 + L1MEd LINE L1 943 1150 -4969 775 285 69 14 chr15 44918887 44919178 -56461343 + L2 LINE L2 3003 3309 -4 383 176 45 182 chr15 44919269 44919318 -56461203 + L1MC4 LINE L1 7699 7753 -289 1547 179 20 36 chr15 44919318 44919619 -56460902 + AluJo SINE Alu 1 296 -16 383 176 45 182 chr15 44919619 44919899 -56460622 + L1MC4 LINE L1 7753 7983 -59 259 269 164 8 chr15 44920100 44920234 -56460287 + L1M4b LINE L1 91 245 -6614 444 272 120 76 chr15 44920427 44920784 -56459737 + L1M4b LINE L1 828 1200 -5655 560 262 90 9 chr15 44920822 44921094 -56459427 + L1M4b LINE L1 1180 1477 -5382 1357 142 85 4 chr15 44921104 44921364 -56459157 + L1MB1 LINE L1 5888 6168 0 6153 86 9 15 chr15 44921476 44922750 -56457771 + L1PA8A LINE L1 4867 6129 -2 249 206 32 0 chr15 44922795 44922858 -56457663 - L1M4b LINE L1 -5303 1556 1492 1381 171 121 8 chr15 44922895 44923152 -56457369 + AluJo SINE Alu 1 286 -26 1108 148 43 10 chr15 44923206 44923415 -56457106 + L1MA4 LINE L1 6079 6294 -6 4678 255 65 28 chr15 44923415 44925517 -56455004 + L1M4b LINE L1 1758 3953 -3004 2255 99 3 13 chr15 44925517 44925830 -56454691 + AluSx SINE Alu 1 310 -2 4678 255 65 28 chr15 44925830 44926524 -56453997 + L1M4b LINE L1 3953 4620 -2337 33 43 0 0 chr15 44929917 44929964 -56450557 + AT_rich Low_complexity Low_complexity 1 47 0 336 330 118 38 chr15 44930637 44931028 -56449493 - L1M4 LINE L1 -3594 2552 2131 1059 80 7 0 chr15 44931176 44931314 -56449207 - AluJb SINE Alu -1 311 173 1179 150 0 0 chr15 44931692 44931865 -56448656 - FRAM SINE Alu -3 173 1 2186 102 7 0 chr15 44934152 44934446 -56446075 + AluSx SINE Alu 1 296 -16 355 237 131 81 chr15 44935108 44935306 -56445215 + L1MEd LINE L1 943 1150 -4969 23 0 0 0 chr15 44936276 44936299 -56444222 + AT_rich Low_complexity Low_complexity 1 23 0 2324 99 0 0 chr15 44937051 44937344 -56443177 + AluSx SINE Alu 1 293 -19 523 281 111 0 chr15 44937955 44938279 -56442242 + L1ME4a LINE L1 5710 6069 -52 198 0 0 0 chr15 44938923 44938945 -56441576 + (TG)n Simple_repeat Simple_repeat 1 22 0 440 206 81 38 chr15 44938945 44939105 -56441416 - LTR7 LTR ERV1 -46 404 238 239 371 65 8 chr15 44939226 44939350 -56441171 + MIR SINE MIR 25 155 -107 25 0 0 0 chr15 44939799 44939824 -56440697 + AT_rich Low_complexity Low_complexity 1 25 0 243 340 136 48 chr15 44940121 44940415 -56440106 - L2 LINE L2 -5 3267 2948 613 315 45 38 chr15 44940443 44940710 -56439811 - L2 LINE L2 -447 2867 2599 384 324 79 86 chr15 44940791 44941245 -56439276 - L2 LINE L2 -1 3271 2821 414 265 39 0 chr15 44941594 44941696 -56438825 + L2 LINE L2 3203 3308 -5 261 297 0 0 chr15 44942225 44942300 -56438221 + MIR SINE MIR 44 118 -90 3098 220 64 69 chr15 44942330 44942643 -56437878 + L1MC4 LINE L1 6749 7062 -980 237 108 0 0 chr15 44942643 44942680 -56437841 + (TAGG)n Simple_repeat Simple_repeat 3 39 0 3098 220 64 69 chr15 44942680 44943667 -56436854 + L1MC4 LINE L1 7062 8042 0 210 284 0 15 chr15 44943681 44943748 -56436773 + MIR SINE MIR 184 249 -13 27 49 0 0 chr15 44943772 44943813 -56436708 + AT_rich Low_complexity Low_complexity 1 41 0 565 249 41 32 chr15 44944046 44944267 -56436254 + L1ME3A LINE L1 5727 5949 -221 866 123 10 123 chr15 44946602 44946797 -56433724 - AluSg/x SINE Alu -6 306 134 240 196 0 36 chr15 44948122 44948178 -56432343 + MIR3 SINE MIR 142 195 -13 1162 55 0 0 chr15 44948974 44949119 -56431402 - L1PA8 LINE L1 -7 6165 6021 243 277 0 0 chr15 44950203 44950268 -56430253 + (TA)n Simple_repeat Simple_repeat 2 66 0 486 283 83 46 chr15 44950669 44950909 -56429612 + MIR SINE MIR 7 255 -7 283 297 59 20 chr15 44950932 44951033 -56429488 + MIR3 SINE MIR 88 192 -16 948 164 41 0 chr15 44951479 44951650 -56428871 + MER5B DNA MER1_type 1 178 0 587 225 87 64 chr15 44951855 44951906 -56428615 + MER5A DNA MER1_type 10 58 -131 2272 106 0 3 chr15 44951906 44952208 -56428313 + AluSx SINE Alu 1 301 -11 587 225 87 64 chr15 44952208 44952329 -56428192 + MER5A DNA MER1_type 58 186 -3 948 164 41 0 chr15 44953431 44953602 -56426919 + MER5B DNA MER1_type 1 178 0 587 225 87 64 chr15 44953807 44953858 -56426663 + MER5A DNA MER1_type 10 58 -131 2288 105 0 3 chr15 44953858 44954162 -56426359 + AluSx SINE Alu 1 303 -9 587 225 87 64 chr15 44954162 44954283 -56426238 + MER5A DNA MER1_type 58 186 -3 255 266 35 53 chr15 44955003 44955172 -56425349 - L1M4 LINE L1 -1472 4674 4509 263 303 0 81 chr15 44955233 44955332 -56425189 + L3b LINE CR1 1244 1334 -249 261 214 57 0 chr15 44955413 44955483 -56425038 - MIR SINE MIR -34 228 155 21 36 0 0 chr15 44956816 44956844 -56423677 + AT_rich Low_complexity Low_complexity 1 28 0 858 261 47 0 chr15 44956865 44957080 -56423441 + Charlie1 DNA MER1_type 20 244 -2517 586 139 148 0 chr15 44957061 44957183 -56423338 + Charlie1 DNA MER1_type 2622 2761 0 * 2424 80 3 0 chr15 44958816 44959115 -56421406 + AluSx SINE Alu 1 300 -12 273 281 0 34 chr15 44960615 44960704 -56419817 + L1MD2 LINE L1 5997 6082 -277 247 91 45 0 chr15 44960786 44960830 -56419691 - L1PA7 LINE L1 -1 6153 6108 2640 35 3 6 chr15 44961064 44961376 -56419145 - AluY SINE Alu 0 311 1 25 0 0 0 chr15 44964352 44964377 -56416144 + AT_rich Low_complexity Low_complexity 1 25 0 1958 222 119 13 chr15 44964554 44965149 -56415372 - L1MC4a LINE L1 -1 7807 7150 333 281 10 0 chr15 44965231 44965327 -56415194 - L1ME LINE L1 -515 5606 5510 401 182 0 0 chr15 44965582 44965648 -56414873 + AluJ/FLAM SINE Alu 8 73 -229 2101 168 3 3 chr15 44967040 44967404 -56413117 - MER47A DNA MER2_type 0 366 3 1757 177 3 3 chr15 44967508 44967802 -56412719 + AluJb SINE Alu 1 294 -18 1291 253 22 25 chr15 44968592 44968956 -56411565 + L1MEc LINE L1 35 397 -5999 2051 244 124 13 chr15 44968995 44969832 -56410689 + L1MEc LINE L1 518 1447 -4949 641 266 78 64 chr15 44969830 44970457 -56410064 + L1MEc LINE L1 458 1093 -5112 * 31 0 0 0 chr15 44970766 44970797 -56409724 + AT_rich Low_complexity Low_complexity 1 31 0 310 235 205 42 chr15 44970850 44971007 -56409514 + L1MEc LINE L1 1527 1714 -4682 1266 163 23 42 chr15 44971007 44971313 -56409208 + L1MB8 LINE L1 5879 6178 0 353 260 71 52 chr15 44971825 44971979 -56408542 + L1ME4a LINE L1 5571 5727 -394 280 179 57 66 chr15 44972164 44972270 -56408251 + L1ME4a LINE L1 5985 6089 -32 1961 195 100 11 chr15 44972303 44972764 -56407757 + L1MC3 LINE L1 7284 7785 0 345 62 0 0 chr15 44972851 44972899 -56407622 + (TG)n Simple_repeat Simple_repeat 1 48 0 21 71 0 0 chr15 44973067 44973109 -56407412 + AT_rich Low_complexity Low_complexity 1 42 0 2350 88 3 0 chr15 44974052 44974349 -56406172 + AluSp SINE Alu 1 298 -15 237 287 115 25 chr15 44974652 44974774 -56405747 + MIR3 SINE MIR 40 172 -36 449 258 129 49 chr15 44974886 44975111 -56405410 - MIR SINE MIR 0 262 20 249 298 9 53 chr15 44976113 44976227 -56404294 + L2 LINE L2 3137 3245 -27 21 0 0 0 chr15 44976753 44976774 -56403747 + AT_rich Low_complexity Low_complexity 1 21 0 231 227 45 45 chr15 44977416 44977482 -56403039 - MIR3 SINE MIR -51 157 92 955 274 102 14 chr15 44978553 44978984 -56401537 + Tigger8 DNA MER2_type 196 664 -2 292 200 46 0 chr15 44979010 44979075 -56401446 + L1ME4a LINE L1 5977 6044 -77 353 171 11 0 chr15 44979132 44979220 -56401301 + (TA)n Simple_repeat Simple_repeat 2 90 0 214 244 22 0 chr15 44979724 44979769 -56400752 + L3 LINE CR1 1520 1565 -12 386 109 31 0 chr15 44981241 44981305 -56399216 + Alu SINE Alu 230 295 -5 375 181 0 0 chr15 44981908 44981980 -56398541 - L1PA16 LINE L1 -16 6150 6079 21 0 0 0 chr15 44982063 44982084 -56398437 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr15 44982453 44982473 -56398048 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 2080 137 3 13 chr15 44982549 44982856 -56397665 - AluJb SINE Alu -8 304 1 259 203 0 25 chr15 44982917 44982996 -56397525 + (TAAA)n Simple_repeat Simple_repeat 2 78 0 2400 75 0 34 chr15 44983709 44984030 -56396491 - AluSx SINE Alu -2 310 1 2297 170 59 43 chr15 44984865 44985358 -56395163 + MLT1D LTR MaLR 5 505 0 558 294 108 30 chr15 44985599 44985868 -56394653 - L2 LINE L2 -38 3275 2986 306 187 94 158 chr15 44985929 44985962 -56394559 + MARNA DNA Mariner 210 244 -342 2234 95 3 3 chr15 44985962 44986258 -56394263 - AluSq SINE Alu -17 296 1 306 187 94 158 chr15 44986258 44986395 -56394126 + MARNA DNA Mariner 244 369 -217 1617 119 123 8 chr15 44986928 44987207 -56393314 - AluSg1 SINE Alu 0 308 1 41 0 0 0 chr15 44987209 44987250 -56393271 + AT_rich Low_complexity Low_complexity 1 41 0 2163 87 11 0 chr15 44987394 44987680 -56392841 - AluY SINE Alu -22 289 1 2143 107 3 20 chr15 44988211 44988510 -56392011 - AluSx SINE Alu -16 296 3 217 293 129 9 chr15 44988556 44988672 -56391849 + MIR3 SINE MIR 40 169 -39 678 191 92 72 chr15 44988917 44989168 -56391353 - MER112 DNA MER1_type 0 256 1 743 170 63 6 chr15 44989435 44989594 -56390927 + L1PA16 LINE L1 5996 6163 -3 22 80 0 0 chr15 44990869 44990919 -56389602 + AT_rich Low_complexity Low_complexity 1 50 0 274 235 0 0 chr15 44990928 44990979 -56389542 - tRNA-Asp-GAC tRNA tRNA -24 51 1 1148 204 21 41 chr15 44991027 44991366 -56389155 - L1MC5 LINE L1 -29 7932 7601 315 0 0 0 chr15 44991680 44991715 -56388806 + (CA)n Simple_repeat Simple_repeat 2 36 0 2093 108 24 10 chr15 44997202 44997498 -56383023 + AluSx SINE Alu 1 300 -12 26 30 0 0 chr15 44998879 44998912 -56381609 + AT_rich Low_complexity Low_complexity 1 33 0 445 255 107 104 chr15 44999406 44999743 -56380778 - MER102b DNA MER1_type -3 338 1 280 259 0 0 chr15 44999998 45000056 -56380465 - MIR SINE MIR -8 254 197 643 291 76 61 chr15 45000063 45000662 -56379859 + L2 LINE L2 2633 3261 -52 489 222 64 35 chr15 45002150 45002321 -56378200 - MER104 DNA MER2_type -4 176 1 1359 13 0 0 chr15 45002818 45002970 -56377551 + AluYb8 SINE Alu 155 306 -12 331 297 108 42 chr15 45003850 45004136 -56376385 + L1M4 LINE L1 5270 5574 -600 240 245 302 0 chr15 45004515 45004621 -56375900 + L2 LINE L2 3172 3309 -4 225 306 0 0 chr15 45004648 45004710 -56375811 - L2 LINE L2 0 3313 3252 569 271 92 24 chr15 45004929 45005136 -56375385 + MIR SINE MIR 1 221 -41 212 194 0 0 chr15 45007777 45007813 -56372708 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 584 277 25 35 chr15 45008125 45008327 -56372194 - MIR SINE MIR -49 213 14 415 303 74 6 chr15 45009236 45009398 -56371123 + MIR SINE MIR 20 192 -70 244 231 19 0 chr15 45009716 45009768 -56370753 - L2 LINE L2 -6 3307 3255 449 211 105 0 chr15 45010239 45010353 -56370168 + MLT1C LTR MaLR 8 133 -334 1005 230 131 17 chr15 45010461 45010752 -56369769 + MLT1C LTR MaLR 142 465 -2 2051 133 3 0 chr15 45011331 45011632 -56368889 + AluSx SINE Alu 5 306 -6 189 100 0 0 chr15 45011851 45011864 -56368657 + (TAAG)n Simple_repeat Simple_repeat 2 14 -17 2152 84 0 52 chr15 45011864 45012173 -56368348 + AluY SINE Alu 1 293 -18 189 100 0 0 chr15 45012173 45012189 -56368332 + (TAAG)n Simple_repeat Simple_repeat 13 31 0 21 0 0 0 chr15 45012686 45012707 -56367814 + AT_rich Low_complexity Low_complexity 1 21 0 442 220 106 23 chr15 45012792 45012924 -56367597 - LTR16A1 LTR ERVL -49 408 266 1204 153 70 8 chr15 45013425 45013667 -56366854 - L1MD1 LINE L1 -7 6235 5979 1035 181 0 6 chr15 45013667 45013838 -56366683 - MLT1A1 LTR MaLR -2 363 194 325 73 0 0 chr15 45013938 45013979 -56366542 - MLT1A1 LTR MaLR -324 41 1 3085 167 41 28 chr15 45013982 45014043 -56366478 - L1MD1 LINE L1 -271 5971 5912 195 42 0 0 chr15 45014043 45014067 -56366454 + (TA)n Simple_repeat Simple_repeat 1 24 0 3085 167 41 28 chr15 45014067 45014652 -56365869 - L1MD1 LINE L1 -330 5912 5313 1858 152 7 3 chr15 45014652 45014954 -56365567 - AluSx SINE Alu -9 303 1 3085 167 41 28 chr15 45014954 45014995 -56365526 - L1MD1 LINE L1 -929 5313 5274 370 278 139 0 chr15 45015106 45015250 -56365271 - AluSc SINE Alu -8 291 128 2350 201 46 28 chr15 45015355 45015796 -56364725 - L1MC/D LINE L1 -480 5998 5566 2324 99 3 0 chr15 45015796 45016098 -56364423 - AluSx SINE Alu -9 303 1 2350 201 46 28 chr15 45016098 45016256 -56364265 - L1MC/D LINE L1 -912 5566 5412 2005 120 17 3 chr15 45016256 45016547 -56363974 - AluSx SINE Alu -17 295 1 2350 201 46 28 chr15 45016547 45016771 -56363750 - L1MC/D LINE L1 -1066 5412 5150 2057 165 39 35 chr15 45016771 45017320 -56363201 - MLT2A2 LTR ERVL 0 554 1 5074 228 40 41 chr15 45017320 45018248 -56362273 - L1MC/D LINE L1 -1228 5154 4226 1580 194 3 11 chr15 45018248 45018532 -56361989 - AluJb SINE Alu -20 292 11 312 203 0 0 chr15 45018483 45018542 -56361979 - AluS SINE Alu -242 59 1 * 5074 228 40 41 chr15 45018542 45019233 -56361288 - L1MC/D LINE L1 -2166 4216 3527 854 245 49 21 chr15 45019742 45020196 -56360325 + LTR33 LTR ERVL 1 499 -22 358 298 23 8 chr15 45021211 45021342 -56359179 - MIR3 SINE MIR -3 205 73 198 128 0 0 chr15 45021661 45021700 -56358821 + (T)n Simple_repeat Simple_repeat 1 39 0 1632 153 23 0 chr15 45022767 45023029 -56357492 - AluSg SINE Alu -14 296 29 317 215 32 11 chr15 45023757 45023850 -56356671 + L1MC4 LINE L1 7701 7795 -247 2080 204 37 34 chr15 45023950 45024406 -56356115 - L1MC/D LINE L1 -3444 2938 2485 2235 118 3 0 chr15 45024406 45024710 -56355811 + AluSx SINE Alu 2 306 -6 2080 204 37 34 chr15 45024710 45025156 -56355365 - L1MC/D LINE L1 -3897 2485 2017 592 188 10 0 chr15 45025170 45025271 -56355250 + Tigger3(Golem) DNA MER2_type 2 103 -2926 6621 141 22 15 chr15 45025277 45026476 -56354045 + Tigger3(Golem) DNA MER2_type 1821 3028 -1 2833 223 49 34 chr15 45026492 45026756 -56353765 - L1MC/D LINE L1 -4488 1896 1637 2198 123 0 3 chr15 45026756 45027065 -56353456 + AluSq SINE Alu 1 308 -5 2833 223 49 34 chr15 45027065 45027998 -56352523 - L1MC/D LINE L1 -4747 1637 800 691 271 45 90 chr15 45028370 45028791 -56351730 - L1M3d LINE L1 -5487 644 3 236 245 0 0 chr15 45029850 45029903 -56350618 - L2 LINE L2 0 3313 3261 1813 136 7 49 chr15 45030663 45030971 -56349550 + AluSx SINE Alu 1 295 -17 354 317 48 0 chr15 45030971 45031075 -56349446 - MIR SINE MIR -149 113 5 28 79 0 0 chr15 45032292 45032355 -56348166 + AT_rich Low_complexity Low_complexity 1 63 0 381 241 13 26 chr15 45032754 45032900 -56347621 + L1ME LINE L1 5678 5824 -297 1107 209 5 0 chr15 45032977 45033183 -56347338 + MER82 DNA MER2_type 447 653 0 235 260 83 39 chr15 45033468 45033649 -56346872 + L1 LINE L1 4800 4988 -1158 625 313 58 7 chr15 45033715 45033990 -56346531 + L1 LINE L1 3080 3368 -2778 1038 275 69 3 chr15 45034607 45034927 -56345594 + MLT1J LTR MaLR 1 341 -170 337 104 0 0 chr15 45035418 45035466 -56345055 - tRNA-Thr-ACT tRNA tRNA -29 48 1 557 300 142 3 chr15 45036236 45036559 -56343962 + LTR16A LTR ERVL 78 445 -5 1799 172 13 7 chr15 45037418 45037726 -56342795 + AluJb SINE Alu 1 310 -2 1353 205 72 74 chr15 45037726 45038156 -56342365 + MLT1C LTR MaLR 39 467 0 24 0 0 0 chr15 45038816 45038840 -56341681 + AT_rich Low_complexity Low_complexity 1 24 0 238 282 164 58 chr15 45039004 45039367 -56341154 + L2 LINE L2 2646 3083 -189 2383 116 31 0 chr15 45039390 45039743 -56340778 + THE1B LTR MaLR 1 364 0 797 259 62 16 chr15 45040112 45040578 -56339943 + Charlie7 DNA MER1_type 180 722 -1890 872 220 0 0 chr15 45040771 45040930 -56339591 - FRAM SINE Alu -7 159 1 693 292 46 5 chr15 45040958 45041153 -56339368 + MIR SINE MIR 47 249 -13 437 312 118 76 chr15 45041192 45041522 -56338999 + L2 LINE L2 2928 3271 -1 2484 74 3 0 chr15 45042488 45042798 -56337723 + AluSp SINE Alu 1 311 -2 489 331 98 42 chr15 45043999 45044334 -56336187 + L2 LINE L2 2914 3267 -5 2084 126 0 0 chr15 45044688 45044973 -56335548 + AluSx SINE Alu 1 285 -27 206 0 69 0 chr15 45044976 45045005 -56335516 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 30 0 0 0 chr15 45045119 45045149 -56335372 + AT_rich Low_complexity Low_complexity 1 30 0 257 355 163 35 chr15 45046515 45046884 -56333637 - L2 LINE L2 -551 2763 2348 365 259 47 53 chr15 45047104 45047274 -56333247 + L1MC4 LINE L1 7873 8041 -1 2202 113 0 28 chr15 45047389 45047739 -56332782 + AluSx SINE Alu 1 312 0 5722 161 30 14 chr15 45047741 45049748 -56330773 + L1PA16 LINE L1 4118 6156 -10 1322 143 0 17 chr15 45049748 45049977 -56330544 + L1PA15 LINE L1 5940 6165 0 5722 161 30 14 chr15 45049977 45049989 -56330532 + L1PA16 LINE L1 6156 6166 0 235 254 0 0 chr15 45052378 45052433 -56328088 + (TA)n Simple_repeat Simple_repeat 2 56 0 27 0 0 0 chr15 45052603 45052630 -56327891 + AT_rich Low_complexity Low_complexity 1 27 0 240 305 105 77 chr15 45053500 45053785 -56326736 + L3b LINE CR1 1137 1429 -154 333 0 0 0 chr15 45054078 45054115 -56326406 + (TG)n Simple_repeat Simple_repeat 1 37 0 222 304 0 14 chr15 45054340 45054409 -56326112 + L2 LINE L2 3246 3313 0 885 152 0 55 chr15 45054674 45054839 -56325682 + FAM SINE Alu 1 44 -5 1761 115 37 8 chr15 45055003 45055247 -56325274 + AluSq SINE Alu 1 251 -62 326 242 73 20 chr15 45055579 45055676 -56324845 + MIR SINE MIR 8 108 -100 797 163 0 8 chr15 45055991 45056120 -56324401 - FLAM_A SINE Alu -5 128 1 569 269 153 34 chr15 45057998 45058533 -56321988 - L1ME4a LINE L1 -2 6119 5521 608 290 21 21 chr15 45058713 45058906 -56321615 + MIR SINE MIR 70 262 0 224 282 47 47 chr15 45059002 45059087 -56321434 - MIR SINE MIR 0 262 178 2698 42 0 0 chr15 45059296 45059605 -56320916 - AluY SINE Alu -2 309 1 338 350 42 21 chr15 45060389 45060532 -56319989 - MIR SINE MIR -108 154 9 316 222 0 0 chr15 45061254 45061317 -56319204 - L2 LINE L2 -3 3269 3207 667 268 63 66 chr15 45061840 45062016 -56318505 - L2 LINE L2 0 3313 3137 517 104 26 0 chr15 45062016 45062093 -56318428 - MADE1 DNA Mariner 0 80 2 667 268 63 66 chr15 45062093 45062233 -56318288 - L2 LINE L2 -176 3137 2998 261 75 0 0 chr15 45062275 45062315 -56318206 + (CA)n Simple_repeat Simple_repeat 2 41 0 381 250 78 23 chr15 45064377 45064505 -56316016 - MIR SINE MIR -28 234 100 256 150 0 0 chr15 45064623 45064663 -56315858 - tRNA-Thr-ACT tRNA tRNA -37 40 1 511 83 0 14 chr15 45065477 45065549 -56314972 + Alu SINE Alu 225 295 -17 231 254 18 0 chr15 45067212 45067267 -56313254 + MLT1K LTR MaLR 145 200 -388 252 290 0 29 chr15 45067345 45067414 -56313107 + MLT1K LTR MaLR 322 388 -200 502 260 53 12 chr15 45067798 45067967 -56312554 + L1ME3A LINE L1 5572 5747 -423 700 209 165 12 chr15 45068017 45068271 -56312250 + L1ME3A LINE L1 5870 6162 -8 2396 71 10 0 chr15 45068321 45068618 -56311903 + AluY SINE Alu 1 300 -11 361 241 214 21 chr15 45068729 45068916 -56311605 + L1M4 LINE L1 4485 4707 -1439 14296 85 38 2 chr15 45069204 45071253 -56309268 + Charlie3 DNA MER1_type 1 2122 -588 393 91 0 0 chr15 45071253 45071308 -56309213 - MLT2A1 LTR ERVL 0 444 390 261 211 0 0 chr15 45071308 45071365 -56309156 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 3295 55 2 2 chr15 45071367 45071767 -56308754 - MLT2A1 LTR ERVL -44 400 1 * 3700 75 42 2 chr15 45071767 45072247 -56308274 + Charlie3 DNA MER1_type 2118 2616 -94 415 236 160 0 chr15 45075686 45075830 -56304691 + MIR SINE MIR 25 191 -71 375 41 0 0 chr15 45075833 45075882 -56304639 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr15 45076146 45076168 -56304353 + AT_rich Low_complexity Low_complexity 1 22 0 216 100 0 25 chr15 45076210 45076250 -56304271 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 452 203 89 141 chr15 45078060 45078298 -56302223 - MIR SINE MIR -27 235 17 23 33 0 0 chr15 45079375 45079405 -56301116 + AT_rich Low_complexity Low_complexity 1 30 0 195 299 119 0 chr15 45079505 45079572 -56300949 + L3 LINE CR1 1492 1566 -11 548 243 72 20 chr15 45080121 45080273 -56300248 + MIR SINE MIR 68 227 -35 2225 89 7 0 chr15 45080838 45081120 -56299401 + AluSg SINE Alu 1 284 -26 28 48 0 0 chr15 45081120 45081162 -56299359 + AT_rich Low_complexity Low_complexity 1 42 0 274 331 34 69 chr15 45081351 45081613 -56298908 + MIR3 SINE MIR 15 262 0 669 215 60 7 chr15 45082142 45082291 -56298230 + MIR SINE MIR 2 158 -104 1847 214 25 23 chr15 45082302 45082783 -56297738 + L1 LINE L1 2926 3407 -2739 4709 115 12 22 chr15 45082786 45083474 -56297047 + L1MB3 LINE L1 5452 6134 -49 1842 127 51 14 chr15 45083474 45083766 -56296755 + AluSx SINE Alu 1 303 -9 4709 115 12 22 chr15 45083766 45083808 -56296713 + L1MB3 LINE L1 6134 6175 -8 237 281 0 0 chr15 45083838 45083895 -56296626 + MIR SINE MIR 203 259 -3 450 328 11 17 chr15 45084246 45084423 -56296098 + MIR3 SINE MIR 3 178 -30 2496 74 0 0 chr15 45084426 45084736 -56295785 + AluY SINE Alu 2 311 0 707 326 12 12 chr15 45084858 45085100 -56295421 - MIR SINE MIR 0 262 21 261 294 28 49 chr15 45085215 45085358 -56295163 - MIR3 SINE MIR 0 208 69 195 266 31 0 chr15 45085690 45085754 -56294767 + MIR SINE MIR 196 261 -1 21 36 0 0 chr15 45086599 45086627 -56293894 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr15 45086700 45086729 -56293792 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2393 49 0 3 chr15 45086733 45087018 -56293503 - AluY SINE Alu -27 284 1 1413 82 0 5 chr15 45087561 45087745 -56292776 + AluSq SINE Alu 119 301 -12 209 132 26 0 chr15 45087806 45087844 -56292677 + (TAA)n Simple_repeat Simple_repeat 3 41 0 1248 180 62 5 chr15 45088207 45088418 -56292103 - MER58A DNA MER1_type -1 223 1 333 271 95 80 chr15 45088418 45088672 -56291849 + L1MC/D LINE L1 5334 5594 -2214 766 127 206 0 chr15 45088698 45088824 -56291697 + FRAM SINE Alu 4 155 -21 21 0 0 0 chr15 45089630 45089651 -56290870 + AT_rich Low_complexity Low_complexity 1 21 0 1538 161 3 63 chr15 45089651 45089968 -56290553 - AluJo SINE Alu -14 298 1 477 351 52 0 chr15 45089975 45090186 -56290335 - MIR SINE MIR -13 249 28 1580 176 7 24 chr15 45090664 45090959 -56289562 + AluJo SINE Alu 1 290 -22 747 159 0 0 chr15 45091044 45091176 -56289345 + CT-rich Low_complexity Low_complexity 1 132 0 2388 98 3 0 chr15 45091176 45091483 -56289038 - AluSx SINE Alu -4 308 1 276 30 0 0 chr15 45092372 45092405 -56288116 + (CA)n Simple_repeat Simple_repeat 1 33 0 261 0 0 0 chr15 45092620 45092649 -56287872 + (CA)n Simple_repeat Simple_repeat 2 30 0 2043 132 4 0 chr15 45094048 45094363 -56286158 + AluSx SINE Alu 1 316 0 543 272 80 6 chr15 45094646 45094808 -56285713 - MER5A DNA MER1_type -1 188 15 2214 122 3 0 chr15 45095089 45095400 -56285121 + AluSx SINE Alu 1 312 0 768 230 22 28 chr15 45095579 45095757 -56284764 - MER5B DNA MER1_type 0 178 2 1750 189 32 26 chr15 45095761 45096100 -56284421 - MER58B DNA MER1_type 0 341 1 402 276 55 16 chr15 45096577 45096704 -56283817 + MIR SINE MIR 29 160 -102 1980 155 0 3 chr15 45096783 45097086 -56283435 + AluJb SINE Alu 1 302 -10 1099 249 65 29 chr15 45097376 45097761 -56282760 + LTR16A LTR ERVL 30 428 -22 599 139 228 89 chr15 45098507 45098611 -56281910 + MER5A DNA MER1_type 9 97 -92 189 0 0 0 chr15 45098611 45098632 -56281889 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1004 181 0 12 chr15 45098633 45098793 -56281728 - FAM SINE Alu -17 158 1 599 139 228 89 chr15 45098793 45098844 -56281677 + MER5A DNA MER1_type 96 188 -1 365 305 7 64 chr15 45099087 45099228 -56281293 + MIR SINE MIR 51 183 -79 221 351 0 0 chr15 45099790 45099847 -56280674 + C-rich Low_complexity Low_complexity 1 57 0 194 231 0 26 chr15 45099990 45100029 -56280492 + L2 LINE L2 134 171 -3143 251 321 18 9 chr15 45101282 45101391 -56279130 + CT-rich Low_complexity Low_complexity 2 111 0 315 225 22 34 chr15 45101608 45101697 -56278824 + LTR67 LTR ERVL 456 543 -14 1275 127 11 0 chr15 45102082 45102271 -56278250 - AluSg/x SINE Alu -1 311 121 2509 136 3 0 chr15 45102284 45102651 -56277870 - L1PB1 LINE L1 -2 6149 5782 252 184 0 0 chr15 45102683 45102732 -56277789 + (TG)n Simple_repeat Simple_repeat 2 50 0 15698 186 33 14 chr15 45102733 45108890 -56271631 - L1P1 LINE L1 -364 6507 114 950 127 0 0 chr15 45108894 45109028 -56271493 - AluJb SINE Alu -177 135 2 345 284 86 0 chr15 45109156 45109272 -56271249 + MIR SINE MIR 26 151 -57 1482 124 66 31 chr15 45109617 45109875 -56270646 - L1MB3 LINE L1 -17 6166 5900 793 175 31 6 chr15 45109875 45110035 -56270486 - L1MB3 LINE L1 -783 5363 5200 233 226 0 19 chr15 45110065 45110118 -56270403 - L2 LINE L2 -5 3267 3216 405 0 0 0 chr15 45111142 45111187 -56269334 + (CA)n Simple_repeat Simple_repeat 1 45 0 441 0 0 0 chr15 45112112 45112161 -56268360 + (TG)n Simple_repeat Simple_repeat 2 50 0 1666 194 41 0 chr15 45114164 45114457 -56266064 - AluJb SINE Alu -7 305 1 542 242 8 0 chr15 45114526 45114646 -56265875 + L2 LINE L2 2949 3069 -244 2525 55 0 23 chr15 45114880 45115188 -56265333 - AluY SINE Alu -9 302 2 490 104 0 15 chr15 45115375 45115442 -56265079 - AluJ/FLAM SINE Alu -245 67 2 501 241 139 100 chr15 45115488 45115670 -56264851 + L1ME4a LINE L1 5540 5713 -408 756 161 8 8 chr15 45115670 45115788 -56264733 + FLAM_C SINE Alu 1 118 -15 501 241 139 100 chr15 45115788 45115915 -56264606 + L1ME4a LINE L1 5713 5834 -287 2691 126 4 67 chr15 45115915 45116200 -56264321 + L1MB3 LINE L1 5734 5979 -204 2195 113 10 3 chr15 45116200 45116501 -56264020 - AluSq SINE Alu -10 303 1 2691 126 4 67 chr15 45116501 45116691 -56263830 + L1MB3 LINE L1 5979 6179 -4 501 241 139 100 chr15 45116691 45116940 -56263581 + L1ME4a LINE L1 5834 6121 0 314 254 44 61 chr15 45117006 45117120 -56263401 + L2 LINE L2 3128 3239 -74 201 146 49 0 chr15 45117161 45117202 -56263319 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 1617 214 83 3 chr15 45117223 45117560 -56262961 - MLT1A1 LTR MaLR 0 365 2 376 300 79 37 chr15 45117696 45117886 -56262635 + L3 LINE CR1 1119 1316 -261 258 324 0 0 chr15 45117860 45117928 -56262593 - L2 LINE L2 -4 3268 3201 * 2113 118 23 0 chr15 45118138 45118443 -56262078 + AluSx SINE Alu 1 312 0 1751 164 10 7 chr15 45118504 45118809 -56261712 - AluJo SINE Alu -6 306 1 762 227 89 49 chr15 45120066 45120291 -56260230 + MIR SINE MIR 13 246 -16 382 377 113 21 chr15 45120579 45121046 -56259475 - L2 LINE L2 -585 2729 2220 2318 121 0 0 chr15 45121323 45121628 -56258893 - AluSx SINE Alu -7 305 1 661 311 148 22 chr15 45122349 45122886 -56257635 + L2 LINE L2 2670 3272 0 226 315 32 14 chr15 45124281 45124406 -56256115 - MIR SINE MIR -62 146 40 996 104 0 0 chr15 45125383 45125517 -56255004 + FRAM SINE Alu 28 161 -15 367 301 84 52 chr15 45125737 45126023 -56254498 + L2 LINE L2 1800 2094 -1220 532 212 30 0 chr15 45126060 45126159 -56254362 + MER5B DNA MER1_type 1 102 -76 561 155 138 0 chr15 45126512 45126628 -56253893 + MER58B DNA MER1_type 182 313 -28 869 240 125 48 chr15 45128457 45129025 -56251496 + L1MC4a LINE L1 5317 5967 -1841 2090 104 7 4 chr15 45129396 45129674 -56250847 + AluSq SINE Alu 1 279 -34 308 210 161 0 chr15 45129914 45129995 -56250526 - MIR SINE MIR -80 182 89 1548 135 93 3 chr15 45131823 45132112 -56248409 - MER46B DNA MER2_type 0 236 47 5424 123 43 8 chr15 45132113 45133069 -56247452 + L1MA5 LINE L1 5312 6300 0 247 103 0 0 chr15 45133093 45133132 -56247389 + Tigger4(Zombi) DNA MER2_type 25 63 -2668 22 35 0 0 chr15 45133662 45133691 -56246830 + AT_rich Low_complexity Low_complexity 1 29 0 2811 166 28 0 chr15 45134537 45135068 -56245453 + L1MB7 LINE L1 5631 6176 -8 219 200 27 13 chr15 45135625 45135700 -56244821 + CT-rich Low_complexity Low_complexity 3 78 0 4629 159 28 14 chr15 45137017 45137989 -56242532 + L1MB8 LINE L1 5188 6173 -5 209 114 29 0 chr15 45138074 45138109 -56242412 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 351 240 33 120 chr15 45138154 45138337 -56242184 + L2 LINE L2 3060 3226 -46 369 204 272 31 chr15 45138878 45139040 -56241481 + L2 LINE L2 3113 3313 0 1077 96 120 0 chr15 45139446 45139613 -56240908 + MSTA LTR MaLR 242 428 0 755 175 7 7 chr15 45140112 45140249 -56240272 - FLAM_C SINE Alu -6 137 1 297 264 132 11 chr15 45140258 45140349 -56240172 - MIR SINE MIR -67 141 40 601 239 72 19 chr15 45141338 45141686 -56238835 + MLT1I LTR MaLR 1 409 0 882 267 8 8 chr15 45141708 45141966 -56238555 + MIR SINE MIR 3 260 -2 314 330 48 0 chr15 45142399 45142502 -56238019 + L2 LINE L2 3158 3265 -7 307 288 162 18 chr15 45143897 45144008 -56236513 - MIR3 SINE MIR -22 186 60 * 323 360 150 21 chr15 45143951 45144471 -56236050 - L2 LINE L2 -1158 2156 1570 1395 171 8 8 chr15 45144629 45144869 -56235652 - L1PB4 LINE L1 -17 6139 5900 4123 162 14 4 chr15 45145957 45146716 -56233805 - L1MA9 LINE L1 -146 6166 5400 207 374 33 0 chr15 45147579 45147670 -56232851 - MIR3 SINE MIR -4 204 111 29371 94 12 31 chr15 45147899 45150107 -56230414 + L1P3 LINE L1 718 2965 -3504 2208 117 0 0 chr15 45150107 45150398 -56230123 - AluSx SINE Alu -21 291 1 29371 94 12 31 chr15 45150398 45153324 -56227197 + L1P3 LINE L1 2965 5805 -664 471 240 47 16 chr15 45154854 45154983 -56225538 + MIR SINE MIR 104 236 -26 23 33 0 0 chr15 45155456 45155486 -56225035 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr15 45155645 45155683 -56224838 + AT_rich Low_complexity Low_complexity 1 38 0 192 158 0 0 chr15 45159156 45159194 -56221327 + CT-rich Low_complexity Low_complexity 1 38 0 378 0 0 0 chr15 45159709 45159751 -56220770 + (TG)n Simple_repeat Simple_repeat 2 43 0 708 238 26 7 chr15 45159751 45159902 -56220619 - AluJb SINE Alu -28 284 131 213 158 0 0 chr15 45160428 45160466 -56220055 + L2 LINE L2 1351 1388 -1926 247 290 121 54 chr15 45160703 45160998 -56219523 + L2 LINE L2 2748 3063 -209 23 33 0 0 chr15 45161190 45161220 -56219301 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr15 45162182 45162211 -56218310 + AT_rich Low_complexity Low_complexity 1 29 0 734 64 37 18 chr15 45162217 45162326 -56218195 - HY1 scRNA scRNA -1 111 1 2100 99 35 0 chr15 45163900 45164182 -56216339 + AluSp SINE Alu 1 292 -21 455 181 0 0 chr15 45165027 45165110 -56215411 - FLAM_A SINE Alu -50 92 10 280 305 107 30 chr15 45165167 45165298 -56215223 - L2 LINE L2 -6 3266 3126 675 202 0 23 chr15 45166941 45167070 -56213451 + FLAM_A SINE Alu 1 126 -7 1972 102 8 8 chr15 45167198 45167463 -56213058 + AluSx SINE Alu 1 265 -47 270 0 0 0 chr15 45167473 45167503 -56213018 + (CA)n Simple_repeat Simple_repeat 2 31 0 1905 178 0 9 chr15 45167845 45168160 -56212361 - AluJb SINE Alu 0 312 1 324 268 14 94 chr15 45168180 45168318 -56212203 + L2 LINE L2 3146 3272 0 224 317 185 44 chr15 45169299 45169526 -56210995 + L3 LINE CR1 919 1177 -400 283 341 85 18 chr15 45169568 45169732 -56210789 - MIR SINE MIR -59 203 29 2205 82 4 4 chr15 45170636 45170943 -56209578 - AluSc SINE Alu 0 307 1 389 350 152 39 chr15 45171121 45171979 -56208542 + L2 LINE L2 1521 2475 -839 220 241 25 0 chr15 45172038 45172117 -56208404 + (TA)n Simple_repeat Simple_repeat 1 81 0 276 146 19 39 chr15 45172176 45172279 -56208242 + (TA)n Simple_repeat Simple_repeat 2 102 0 903 226 115 0 chr15 45172354 45172588 -56207933 - MIR SINE MIR 0 262 2 1181 295 111 6 chr15 45173227 45173762 -56206759 - L2 LINE L2 -283 3030 2436 306 180 0 0 chr15 45173773 45173834 -56206687 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr15 45173834 45173855 -56206666 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr15 45174067 45174095 -56206426 + AT_rich Low_complexity Low_complexity 1 28 0 398 326 65 40 chr15 45174424 45174746 -56205775 + L1MC4 LINE L1 7491 7820 -222 2206 93 0 39 chr15 45175618 45175929 -56204592 - AluSq SINE Alu -13 300 2 22 35 0 0 chr15 45176916 45176945 -56203576 + AT_rich Low_complexity Low_complexity 1 29 0 299 183 83 0 chr15 45176959 45177019 -56203502 - L1ME3A LINE L1 -20 6150 6086 1811 159 114 30 chr15 45177116 45177544 -56202977 + L1MD1 LINE L1 5689 6152 -90 1861 133 14 24 chr15 45177559 45177853 -56202668 - AluJo SINE Alu -21 291 1 1735 174 3 3 chr15 45177864 45178151 -56202370 - AluJo SINE Alu -25 287 1 1825 197 22 30 chr15 45178309 45178675 -56201846 + MLT1A1 LTR MaLR 1 363 -2 23 0 0 0 chr15 45179326 45179349 -56201172 + AT_rich Low_complexity Low_complexity 1 23 0 532 79 0 0 chr15 45179478 45179541 -56200980 - AluJ/FRAM SINE Alu -29 283 221 2309 81 7 7 chr15 45179643 45179941 -56200580 - AluSq SINE Alu -15 298 1 21 0 0 0 chr15 45180331 45180352 -56200169 + AT_rich Low_complexity Low_complexity 1 21 0 1829 147 27 10 chr15 45180894 45181186 -56199335 - AluJb SINE Alu -15 297 1 605 302 72 41 chr15 45181540 45182000 -56198521 - L1ME LINE L1 -370 5800 5327 237 277 109 7 chr15 45182525 45182662 -56197859 - L1ME LINE L1 -844 5302 5152 2088 142 6 3 chr15 45183070 45183381 -56197140 - AluSx SINE Alu 0 312 1 778 251 140 17 chr15 45185700 45185818 -56194703 + AluSg1 SINE Alu 2 104 -205 210 37 0 0 chr15 45185818 45185845 -56194676 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 778 251 140 17 chr15 45185845 45185961 -56194560 + AluSg1 SINE Alu 104 265 -44 225 0 0 0 chr15 45185971 45185996 -56194525 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1217 441 10 0 chr15 45186561 45186860 -56193661 - AluJo SINE Alu 0 302 1 1962 153 0 0 chr15 45188156 45188450 -56192071 + AluJb SINE Alu 1 294 -18 180 242 85 105 chr15 45188462 45188615 -56191906 + L2 LINE L2 2306 2455 -859 2528 67 0 0 chr15 45188622 45188920 -56191601 + AluY SINE Alu 1 298 -13 349 202 60 6 chr15 45189319 45189487 -56191034 + (TA)n Simple_repeat Simple_repeat 1 177 0 336 156 104 7 chr15 45189501 45189655 -56190866 + (TATAA)n Simple_repeat Simple_repeat 4 172 0 251 92 81 0 chr15 45189663 45189750 -56190771 + (TTATA)n Simple_repeat Simple_repeat 2 95 0 53 40 0 0 chr15 45189750 45189824 -56190697 + AT_rich Low_complexity Low_complexity 1 74 0 266 290 14 0 chr15 45189835 45189904 -56190617 + L2 LINE L2 2992 3061 -211 199 299 80 43 chr15 45190140 45190327 -56190194 - L2 LINE L2 -742 2572 2379 187 325 33 20 chr15 45190420 45190571 -56189950 + L2 LINE L2 1932 2084 -1230 388 348 111 29 chr15 45190912 45191368 -56189153 + L2 LINE L2 2632 3117 -155 293 333 0 10 chr15 45191474 45191570 -56188951 + MIR SINE MIR 16 110 -98 7057 64 32 0 chr15 45191972 45192958 -56187563 + L1PA13 LINE L1 5149 6161 -2 1182 191 9 14 chr15 45193622 45193842 -56186679 - MER20 DNA MER1_type 0 219 1 538 282 55 17 chr15 45193858 45194039 -56186482 - MER5A DNA MER1_type 0 189 2 192 294 0 0 chr15 45194347 45194398 -56186123 - L2 LINE L2 -23 3249 3199 2152 145 0 0 chr15 45196268 45196608 -56183913 - AluSx SINE Alu 0 340 1 536 207 33 8 chr15 45196612 45196733 -56183788 - MIR SINE MIR -63 145 22 2190 193 28 28 chr15 45197005 45197471 -56183050 + MLT1C LTR MaLR 1 466 -1 284 273 113 27 chr15 45197664 45197814 -56182707 + MIR SINE MIR 20 182 -80 208 295 128 13 chr15 45197939 45198017 -56182504 - MIR3 SINE MIR 0 208 122 540 233 29 122 chr15 45198563 45198808 -56181713 + L2 LINE L2 3092 3313 0 305 271 193 14 chr15 45199199 45199339 -56181182 + MIR3 SINE MIR 41 205 -3 218 287 78 26 chr15 45200014 45200129 -56180392 + L2 LINE L2 2239 2359 -955 1055 204 28 32 chr15 45203407 45203623 -56176898 + MER20 DNA MER1_type 5 219 0 519 45 0 0 chr15 45204800 45204866 -56175655 + (CA)n Simple_repeat Simple_repeat 1 66 0 591 277 12 24 chr15 45205130 45205296 -56175225 - MIR3 SINE MIR -28 180 17 236 301 110 59 chr15 45205966 45206102 -56174419 - MIR SINE MIR -91 171 29 317 266 286 16 chr15 45206481 45206673 -56173848 + MIR SINE MIR 16 259 -3 262 259 17 0 chr15 45206670 45206728 -56173793 - L2 LINE L2 -19 3253 3195 * 45 34 0 0 chr15 45206781 45206840 -56173681 + AT_rich Low_complexity Low_complexity 1 59 0 617 219 126 7 chr15 45206926 45207077 -56173444 + MIR SINE MIR 88 256 -6 356 267 137 0 chr15 45207173 45207319 -56173202 - MIR SINE MIR -29 233 68 443 200 0 56 chr15 45208146 45208271 -56172250 - MIR SINE MIR -90 172 55 1889 182 36 36 chr15 45208489 45208879 -56171642 + MLT1B LTR MaLR 1 390 0 441 283 168 16 chr15 45209498 45209689 -56170832 - MIR SINE MIR -18 244 25 3156 84 2 43 chr15 45209693 45209949 -56170572 + L1PA15 LINE L1 5717 5950 -215 2342 50 0 3 chr15 45209949 45210257 -56170264 + AluY SINE Alu 1 307 0 3156 84 2 43 chr15 45210257 45210462 -56170059 + L1PA15 LINE L1 5950 6162 -3 212 122 0 20 chr15 45210462 45210506 -56170015 + (TTTG)n Simple_repeat Simple_repeat 3 45 0 229 303 45 0 chr15 45211857 45211946 -56168575 - L1MC4 LINE L1 -9 8033 7941 268 236 167 28 chr15 45212034 45212178 -56168343 + L1MC4a LINE L1 5770 5933 -1875 449 141 0 14 chr15 45213729 45213800 -56166721 + LTR37B LTR ERV1 30 99 -369 858 100 62 0 chr15 45213803 45213933 -56166588 - L1PA16 LINE L1 -5 6161 6024 687 83 52 0 chr15 45215589 45215685 -56164836 - L1PA16 LINE L1 -5 6161 6061 3955 172 32 35 chr15 45215825 45217324 -56163197 - L1PB4 LINE L1 -121 6035 4537 521 240 41 0 chr15 45217327 45217448 -56163073 - MLT1E2-int LTR MaLR -1245 126 1 1825 249 137 25 chr15 45217448 45218011 -56162510 - MLT1E2 LTR MaLR 0 626 1 448 278 31 102 chr15 45218299 45218576 -56161945 - MLT1L LTR MaLR -191 424 89 369 0 0 0 chr15 45218966 45219007 -56161514 + (TG)n Simple_repeat Simple_repeat 2 42 0 802 286 9 22 chr15 45219231 45219455 -56161066 + MLT1J LTR MaLR 118 338 -173 400 256 276 10 chr15 45220691 45220894 -56159627 + MIR SINE MIR 6 262 0 379 244 0 0 chr15 45220884 45220966 -56159555 - MIR SINE MIR -105 157 76 * 342 330 90 34 chr15 45221358 45221591 -56158930 + MIR SINE MIR 2 247 -15 22 0 0 0 chr15 45222483 45222505 -56158016 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr15 45223317 45223347 -56157174 + (A)n Simple_repeat Simple_repeat 1 30 0 394 276 83 21 chr15 45224553 45224745 -56155776 + L1ME3A LINE L1 5962 6165 -5 1823 149 17 33 chr15 45225558 45225860 -56154661 - AluJb SINE Alu -2 310 14 26 30 0 0 chr15 45226005 45226038 -56154483 + AT_rich Low_complexity Low_complexity 1 33 0 2672 32 0 10 chr15 45226568 45226881 -56153640 - AluY SINE Alu -1 310 1 27 29 0 0 chr15 45226961 45226995 -56153526 + AT_rich Low_complexity Low_complexity 1 34 0 244 266 0 0 chr15 45228296 45228360 -56152161 - L1M4 LINE L1 -3119 3027 2964 207 0 0 0 chr15 45228360 45228383 -56152138 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1837 181 0 13 chr15 45228384 45228687 -56151834 - 7SLRNA srpRNA srpRNA -21 299 1 2184 108 14 0 chr15 45228792 45229089 -56151432 + AluSx SINE Alu 1 301 -11 23 68 0 0 chr15 45229127 45229171 -56151350 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr15 45229929 45229957 -56150564 + AT_rich Low_complexity Low_complexity 1 28 0 1232 146 5 14 chr15 45233375 45233587 -56146934 - MER2 DNA MER2_type -135 210 1 1039 177 41 70 chr15 45233825 45234068 -56146453 + MER46A DNA MER2_type 1 236 0 32 43 0 0 chr15 45234171 45234217 -56146304 + AT_rich Low_complexity Low_complexity 1 46 0 277 340 141 46 chr15 45234879 45235205 -56145316 - L2 LINE L2 -1 3271 2915 489 332 30 30 chr15 45235286 45235518 -56145003 - L2 LINE L2 -1722 1592 1361 258 250 91 0 chr15 45235518 45235606 -56144915 + L1ME2 LINE L1 6059 6154 -10 337 322 0 11 chr15 45235740 45235830 -56144691 + L2 LINE L2 3223 3311 -2 2058 135 41 36 chr15 45236778 45237140 -56143381 - THE1B LTR MaLR 0 364 1 6545 79 5 0 chr15 45237140 45238017 -56142504 - THE1B-int LTR MaLR 0 1580 700 354 297 79 35 chr15 45238092 45238321 -56142200 - L2 LINE L2 -353 2961 2723 1809 161 138 3 chr15 45238456 45238811 -56141710 - MER57A LTR ERV1 0 403 1 674 118 18 0 chr15 45238884 45238994 -56141527 - LTR54B LTR ERV1 -377 121 10 4491 200 37 29 chr15 45239001 45239796 -56140725 - MER57-int LTR ERV1 -392 7145 6358 1726 165 0 63 chr15 45239796 45240112 -56140409 + AluJb SINE Alu 1 296 -16 4491 200 37 29 chr15 45240112 45240152 -56140369 - MER57-int LTR ERV1 -1179 6358 6320 2085 163 0 34 chr15 45240152 45240501 -56140020 + MER1B DNA MER1_type 1 337 0 4491 200 37 29 chr15 45240501 45240759 -56139762 - MER57-int LTR ERV1 -1217 6320 6042 3389 114 4 20 chr15 45240759 45240981 -56139540 - MER1A DNA MER1_type -2174 528 304 1836 141 85 28 chr15 45240981 45241300 -56139221 + MER1B DNA MER1_type 1 337 0 3389 114 4 20 chr15 45241300 45241586 -56138935 - MER1A DNA MER1_type -2398 304 28 847 251 18 0 chr15 45241598 45241821 -56138700 - MER57-int LTR ERV1 -1486 6051 5825 4456 184 36 14 chr15 45242059 45242353 -56138168 - MER57-int LTR ERV1 -1716 5821 5535 342 0 0 0 chr15 45242353 45242391 -56138130 + (CA)n Simple_repeat Simple_repeat 1 38 0 4456 184 36 14 chr15 45242391 45243150 -56137371 - MER57-int LTR ERV1 -2002 5535 2183 392 287 22 44 chr15 45244307 45244443 -56136078 + MIR SINE MIR 20 152 -56 247 279 44 15 chr15 45244509 45244577 -56135944 + MER5B DNA MER1_type 35 104 -74 1120 251 70 64 chr15 45244593 45244973 -56135548 + L2 LINE L2 2683 3054 -259 1269 98 5 21 chr15 45244973 45245167 -56135354 + L1PB3 LINE L1 5957 6147 -7 1120 251 70 64 chr15 45245167 45245417 -56135104 + L2 LINE L2 3054 3301 -12 1607 159 10 57 chr15 45246126 45246440 -56134081 - AluJo SINE Alu -13 299 1 869 125 0 0 chr15 45246598 45246718 -56133803 + AluSq/x SINE Alu 1 120 -192 24 0 0 0 chr15 45246718 45246742 -56133779 + AT_rich Low_complexity Low_complexity 1 24 0 278 272 19 160 chr15 45248184 45248397 -56132124 - MIR SINE MIR -32 230 48 2848 155 51 26 chr15 45248615 45249184 -56131337 - LTR1 LTR ERV1 0 785 203 318 206 0 0 chr15 45249178 45249246 -56131275 - LTR1 LTR ERV1 -533 252 185 * 735 180 17 11 chr15 45249420 45249598 -56130923 - LTR1 LTR ERV1 -606 179 1 257 333 10 0 chr15 45250120 45250216 -56130305 + CT-rich Low_complexity Low_complexity 6 102 0 1247 258 56 117 chr15 45250823 45251775 -56128746 - L2 LINE L2 -161 3152 2257 1692 188 0 13 chr15 45251987 45252290 -56128231 + AluJb SINE Alu 4 302 -10 556 234 16 0 chr15 45253315 45253443 -56127078 + MIR SINE MIR 133 262 0 1100 89 0 0 chr15 45253675 45253810 -56126711 - AluJb SINE Alu -21 291 157 1543 169 0 0 chr15 45253831 45254110 -56126411 - L1MB5 LINE L1 -30 6144 5866 279 250 0 0 chr15 45254348 45254404 -56126117 - MIR3 SINE MIR -35 173 118 222 382 11 0 chr15 45254506 45254595 -56125926 - L2 LINE L2 -83 3189 3100 29952 116 13 16 chr15 45254600 45259524 -56120997 + L1P LINE L1 11 4919 -1227 390 82 82 0 chr15 45259537 45259610 -56120911 + L1PA7 LINE L1 4148 4226 -1920 6844 65 3 2 chr15 45259621 45259737 -56120784 + L1PA7 LINE L1 4928 5042 -1112 2444 74 3 13 chr15 45259737 45260047 -56120474 + AluY SINE Alu 1 307 -4 6844 65 3 2 chr15 45260047 45261140 -56119381 + L1PA7 LINE L1 5042 6145 -9 218 151 19 75 chr15 45261147 45261253 -56119268 + (TATAA)n Simple_repeat Simple_repeat 3 102 0 1629 189 30 27 chr15 45261343 45261708 -56118813 + MER47A DNA MER2_type 1 366 0 576 210 204 0 chr15 45262864 45263021 -56117500 + MER5A DNA MER1_type 1 189 0 1372 146 142 13 chr15 45263140 45263379 -56117142 - AluSg1 SINE Alu -17 292 23 442 320 0 0 chr15 45263607 45263735 -56116786 + L2 LINE L2 3186 3313 0 371 131 30 50 chr15 45264078 45264177 -56116344 + L1MC5 LINE L1 7756 7852 -109 497 308 55 37 chr15 45264399 45264724 -56115797 + L2 LINE L2 1560 1890 -1424 256 293 54 61 chr15 45264762 45264909 -56115612 + L2 LINE L2 2246 2391 -923 263 133 0 50 chr15 45264965 45265025 -56115496 - L1MA10 LINE L1 -3 6331 6275 * 1696 184 18 26 chr15 45265021 45265071 -56115450 - L1ME1 LINE L1 -197 5969 5920 582 306 28 45 chr15 45265071 45265469 -56115052 - L1MA4A LINE L1 -376 5927 5537 510 282 133 29 chr15 45265667 45265983 -56114538 + MER115 DNA AcHobo 58 406 -287 1239 163 0 26 chr15 45266189 45266422 -56114099 - AluJo SINE Alu -14 298 72 303 93 0 0 chr15 45266453 45266496 -56114025 + (TCCC)n Simple_repeat Simple_repeat 3 45 0 195 304 24 65 chr15 45266496 45266520 -56114001 + L2 LINE L2 2458 2481 -833 1370 45 0 11 chr15 45266520 45266699 -56113822 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 195 304 24 65 chr15 45266699 45266842 -56113679 + L2 LINE L2 2481 2618 -696 247 278 351 0 chr15 45266864 45267015 -56113506 + MIR SINE MIR 23 226 -36 4770 130 51 17 chr15 45267096 45267979 -56112542 + Tigger3b DNA MER2_type 319 1231 0 232 348 45 80 chr15 45268518 45268831 -56111690 - L2 LINE L2 -411 2903 2602 375 202 0 24 chr15 45269054 45269138 -56111383 - MIR SINE MIR -1 261 180 764 241 47 30 chr15 45269138 45269374 -56111147 - MLT1G1 LTR MaLR 0 595 356 294 395 57 6 chr15 45269400 45269557 -56110964 + L2 LINE L2 3107 3271 -1 475 326 170 35 chr15 45269593 45269970 -56110551 - L3 LINE CR1 -75 1502 1075 284 281 132 53 chr15 45271389 45271503 -56109018 - L2 LINE L2 0 3272 3150 441 158 0 0 chr15 45271748 45271824 -56108697 + HY1 scRNA scRNA 33 108 -4 185 389 0 0 chr15 45272039 45272093 -56108428 - MIR SINE MIR -68 140 87 209 197 45 0 chr15 45272984 45273050 -56107471 + (TA)n Simple_repeat Simple_repeat 2 70 0 2133 127 7 0 chr15 45273785 45274085 -56106436 - AluSx SINE Alu -5 307 6 2028 107 0 82 chr15 45274641 45274969 -56105552 - AluSx SINE Alu -11 301 1 1693 141 0 44 chr15 45276151 45276449 -56104072 + AluJb SINE Alu 11 295 -17 2254 95 7 3 chr15 45276710 45277005 -56103516 + AluSq SINE Alu 1 296 -17 2069 142 0 0 chr15 45277062 45277365 -56103156 - AluSx SINE Alu -9 303 1 204 339 31 0 chr15 45277474 45277539 -56102982 - L2 LINE L2 -1 3312 3246 432 277 99 28 chr15 45277649 45277862 -56102659 - L3 LINE CR1 -154 1423 1196 257 264 0 0 chr15 45278004 45278057 -56102464 + MIR3 SINE MIR 131 183 -25 374 268 94 5 chr15 45279058 45279177 -56101344 + MIR SINE MIR 20 144 -64 2076 102 67 0 chr15 45280005 45280290 -56100231 - AluSx SINE Alu -8 304 1 710 129 0 16 chr15 45280586 45280710 -56099811 - L1MB8 LINE L1 -6 6172 6051 420 296 70 0 chr15 45281511 45281683 -56098838 + L1ME4a LINE L1 5743 5926 -195 1325 191 53 39 chr15 45281850 45282132 -56098389 + AluJo SINE Alu 1 286 -26 2293 198 41 41 chr15 45282132 45282168 -56098353 - L1MB8 LINE L1 -43 6135 6100 2117 130 0 13 chr15 45282168 45282469 -56098052 - AluSx SINE Alu -15 297 1 2293 198 41 41 chr15 45282469 45283017 -56097504 - L1MB8 LINE L1 -77 6101 5551 363 338 28 0 chr15 45283439 45283581 -56096940 - L2 LINE L2 -4 3309 3164 1572 260 68 9 chr15 45283686 45284377 -56096144 - L2 LINE L2 -4 3309 2579 1543 205 30 67 chr15 45284534 45284939 -56095582 - MLT1B LTR MaLR 0 390 1 184 316 143 10 chr15 45284983 45285081 -56095440 - L2 LINE L2 -626 2688 2578 669 272 71 36 chr15 45285928 45286152 -56094369 + MIR SINE MIR 7 238 -24 2223 97 23 0 chr15 45286798 45287098 -56093423 - AluSp SINE Alu -6 307 1 2488 77 3 0 chr15 45287375 45287685 -56092836 + AluSp SINE Alu 3 313 0 1830 172 0 41 chr15 45288828 45289147 -56091374 + AluJb SINE Alu 3 308 -4 2248 101 6 28 chr15 45289601 45289919 -56090602 + AluSp SINE Alu 1 311 -2 2438 206 34 16 chr15 45290158 45290662 -56089859 - MER82 DNA MER2_type -9 644 132 1843 178 57 44 chr15 45290715 45291169 -56089352 - MLT1C LTR MaLR -2 465 6 1315 288 32 19 chr15 45291212 45291849 -56088672 + L1ME1 LINE L1 946 1630 -4680 445 289 90 38 chr15 45291901 45292275 -56088246 + L1ME1 LINE L1 3048 3491 -2638 486 115 74 7 chr15 45292525 45292673 -56087848 + (TA)n Simple_repeat Simple_repeat 1 158 0 432 299 81 4 chr15 45292715 45292976 -56087545 + L1ME1 LINE L1 3574 3854 -2275 1902 98 0 0 chr15 45293225 45293471 -56087050 + AluY SINE Alu 39 284 -27 530 281 151 41 chr15 45293725 45294878 -56085643 + L1ME1 LINE L1 4549 5835 -314 15202 161 50 47 chr15 45294912 45299087 -56081434 + L1MA4A LINE L1 2 4164 -2841 413 187 0 0 chr15 45299087 45299162 -56081359 - AluJ/FRAM SINE Alu -7 305 231 15202 161 50 47 chr15 45299162 45299333 -56081188 + L1MA4A LINE L1 4164 4333 -2672 2210 126 7 0 chr15 45299333 45299642 -56080879 - AluSx SINE Alu -1 311 1 15202 161 50 47 chr15 45299642 45300414 -56080107 + L1MA4A LINE L1 4333 5101 -1904 279 0 0 0 chr15 45300414 45300445 -56080076 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 15202 161 50 47 chr15 45300445 45302239 -56078282 + L1MA4A LINE L1 5101 6998 -7 2263 83 7 0 chr15 45302261 45302549 -56077972 + AluSx SINE Alu 1 290 -22 199 284 226 0 chr15 45302703 45302805 -56077716 - MIR3 SINE MIR -78 130 6 2241 106 7 0 chr15 45302853 45303146 -56077375 + AluSx SINE Alu 5 299 -13 547 113 0 0 chr15 45303326 45303406 -56077115 + MADE1 DNA Mariner 1 80 0 562 156 0 10 chr15 45303580 45303676 -56076845 + FRAM SINE Alu 62 156 -20 425 28 56 0 chr15 45303694 45303765 -56076756 + (TA)n Simple_repeat Simple_repeat 2 76 0 225 209 0 0 chr15 45304228 45304295 -56076226 + (TA)n Simple_repeat Simple_repeat 2 68 0 1411 143 5 0 chr15 45304299 45304522 -56075999 + AluSq SINE Alu 87 310 -3 414 263 172 5 chr15 45304596 45304782 -56075739 + L2 LINE L2 1857 2073 -1241 521 277 211 28 chr15 45304793 45305186 -56075335 + L2 LINE L2 2386 2850 -464 221 246 116 0 chr15 45305220 45305289 -56075232 + L2 LINE L2 2938 3014 -299 300 301 83 23 chr15 45305332 45305465 -56075056 + L2 LINE L2 3172 3312 -1 1640 155 32 7 chr15 45305633 45305910 -56074611 - AluJb SINE Alu -28 284 1 2270 96 10 6 chr15 45308261 45308573 -56071948 + AluSq SINE Alu 1 313 0 21 0 0 0 chr15 45308975 45308996 -56071525 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr15 45310496 45310524 -56069997 + AT_rich Low_complexity Low_complexity 1 28 0 1012 254 134 40 chr15 45310749 45311225 -56069296 - MARNA DNA Mariner -21 565 45 924 170 7 0 chr15 45312817 45312964 -56067557 + FAM SINE Alu 26 173 -12 26 30 0 0 chr15 45312992 45313025 -56067496 + AT_rich Low_complexity Low_complexity 1 33 0 198 0 0 0 chr15 45316215 45316237 -56064284 + (A)n Simple_repeat Simple_repeat 1 22 0 2475 63 0 0 chr15 45316632 45316931 -56063590 - AluY SINE Alu -12 299 1 488 169 180 0 chr15 45318393 45318481 -56062040 - MER44D DNA MER2_type -1 604 501 578 203 93 8 chr15 45318481 45318599 -56061922 - MER6 DNA MER2_type -1 864 16 322 163 0 0 chr15 45318598 45318647 -56061874 + MER6 DNA MER2_type 816 864 -1 * 1108 121 103 56 chr15 45318647 45318874 -56061647 - MER44D DNA MER2_type -101 508 1 378 352 76 25 chr15 45318959 45319195 -56061326 - L2 LINE L2 0 3272 3025 799 214 29 0 chr15 45320006 45320179 -56060342 - MER3 DNA MER1_type -78 131 1 1865 141 7 14 chr15 45320350 45320647 -56059874 + AluJb SINE Alu 1 295 -17 21 57 0 0 chr15 45320648 45320683 -56059838 + AT_rich Low_complexity Low_complexity 1 35 0 725 99 0 0 chr15 45321406 45321507 -56059014 - HY3 scRNA scRNA 0 101 1 193 253 195 0 chr15 45321579 45321666 -56058855 - L2 LINE L2 -2 3311 3208 185 250 0 78 chr15 45322705 45322769 -56057752 - L2 LINE L2 -3 3269 3211 2257 82 7 30 chr15 45323634 45323938 -56056583 - AluSp SINE Alu -16 297 1 1902 123 20 27 chr15 45324863 45325163 -56055358 + AluJb SINE Alu 1 298 -14 1765 255 111 10 chr15 45326452 45327256 -56053265 - L2 LINE L2 -5 3308 2427 2047 112 32 0 chr15 45327348 45327633 -56052888 + AluY SINE Alu 1 294 -17 314 313 155 27 chr15 45330252 45330718 -56049803 + L2 LINE L2 2508 3047 -225 207 0 0 0 chr15 45331369 45331392 -56049129 + (A)n Simple_repeat Simple_repeat 1 23 0 180 401 99 40 chr15 45331878 45331938 -56048583 - L2 LINE L2 -90 3182 3127 207 0 0 0 chr15 45331938 45331961 -56048560 + (TATAA)n Simple_repeat Simple_repeat 3 25 0 180 401 99 40 chr15 45331961 45332204 -56048317 - L2 LINE L2 -145 3127 2861 210 338 58 26 chr15 45332816 45332970 -56047551 + L2 LINE L2 2837 2995 -277 244 309 175 0 chr15 45333138 45333235 -56047286 + L2 LINE L2 3154 3267 -5 1503 84 194 4 chr15 45333657 45333939 -56046582 + AluSg SINE Alu 2 328 0 1821 154 26 0 chr15 45334248 45334560 -56045961 + L1PA14 LINE L1 5841 6160 -1 2201 111 7 0 chr15 45334761 45335059 -56045462 + AluSq SINE Alu 1 300 -13 21 0 0 0 chr15 45335448 45335469 -56045052 + AT_rich Low_complexity Low_complexity 1 21 0 2122 123 0 3 chr15 45336182 45336475 -56044046 + AluSx SINE Alu 1 292 -20 720 198 0 0 chr15 45336787 45336908 -56043613 + FLAM_A SINE Alu 1 121 -12 4875 109 88 20 chr15 45336929 45337817 -56042704 + L1MA4A LINE L1 5353 6300 -3 22 0 0 0 chr15 45339091 45339113 -56041408 + GC_rich Low_complexity Low_complexity 1 22 0 310 270 112 51 chr15 45341442 45341620 -56038901 + MIR SINE MIR 23 211 -51 1459 188 59 15 chr15 45342482 45342754 -56037767 - AluJo SINE Alu -26 286 3 269 258 70 62 chr15 45342782 45342910 -56037611 - L1ME LINE L1 -303 5818 5690 2054 93 18 18 chr15 45342941 45343249 -56037272 + AluSx SINE Alu 6 313 0 277 175 62 25 chr15 45343403 45343483 -56037038 - L1MC5 LINE L1 -34 7927 7845 * 369 296 38 0 chr15 45343473 45343605 -56036916 - L1MC4 LINE L1 -113 7929 7793 2077 141 0 3 chr15 45343634 45343933 -56036588 + AluSx SINE Alu 1 298 -14 221 283 19 0 chr15 45344064 45344117 -56036404 - MER5A DNA MER1_type -78 111 58 364 244 74 82 chr15 45344145 45344225 -56036296 - MER94 DNA DNA 0 134 54 2247 66 7 43 chr15 45344225 45344529 -56035992 + AluSc SINE Alu 1 293 -16 364 244 74 82 chr15 45344529 45344583 -56035938 - MER94 DNA DNA -80 54 1 186 299 60 15 chr15 45344947 45345014 -56035507 + L2 LINE L2 3202 3271 -1 2260 116 0 0 chr15 45345351 45345661 -56034860 - AluSx SINE Alu -2 310 1 2006 217 21 21 chr15 45345661 45346140 -56034381 - L1ME1 LINE L1 -45 6121 5643 1143 209 178 77 chr15 45346142 45346623 -56033898 + MLT1E LTR MaLR 1 643 -11 1941 194 19 13 chr15 45346637 45347267 -56033254 - L1ME1 LINE L1 -520 5646 4855 199 313 73 0 chr15 45347376 45347472 -56033049 + L2 LINE L2 3200 3302 -11 22 35 0 0 chr15 45347568 45347597 -56032924 + AT_rich Low_complexity Low_complexity 1 29 0 396 232 45 9 chr15 45347647 45347759 -56032762 - LTR33 LTR ERVL 0 521 406 472 211 0 0 chr15 45347859 45347949 -56032572 + MER34 LTR ERV1 1 90 -452 2322 106 3 0 chr15 45348141 45348453 -56032068 + AluSq SINE Alu 1 313 0 516 209 65 22 chr15 45348638 45348777 -56031744 + L2 LINE L2 3169 3313 0 204 219 27 55 chr15 45348800 45348873 -56031648 - L2 LINE L2 -104 3209 3139 333 182 250 0 chr15 45348941 45349029 -56031492 - MIR SINE MIR -77 185 76 296 286 171 0 chr15 45349055 45349160 -56031361 - L2 LINE L2 0 3272 3150 542 164 179 0 chr15 45349201 45349402 -56031119 + Charlie5 DNA MER1_type 2330 2566 -46 457 192 10 67 chr15 45349404 45349439 -56031082 - MER5A DNA MER1_type -83 106 71 2366 61 37 0 chr15 45349439 45349733 -56030788 - AluY SINE Alu -6 305 1 457 192 10 67 chr15 45349733 45349801 -56030720 - MER5A DNA MER1_type -118 71 9 2197 92 30 0 chr15 45350079 45350374 -56030147 + AluSq SINE Alu 1 304 -9 244 265 103 0 chr15 45350614 45350682 -56029839 - L2 LINE L2 -213 3059 2985 2243 96 3 7 chr15 45350998 45351301 -56029220 - AluSq SINE Alu -11 302 1 306 247 68 0 chr15 45351685 45351758 -56028763 + MIR SINE MIR 31 108 -100 2184 108 3 3 chr15 45352079 45352376 -56028145 + AluSq SINE Alu 1 297 -16 368 313 0 46 chr15 45352974 45353105 -56027416 + MIR3 SINE MIR 13 137 -71 183 42 0 0 chr15 45353540 45353564 -56026957 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 182 114 0 29 chr15 45354675 45354710 -56025811 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 2360 93 3 0 chr15 45354713 45355024 -56025497 - AluSp SINE Alu -1 312 1 2079 114 0 3 chr15 45355420 45355710 -56024811 - AluSx SINE Alu -18 294 6 1091 250 120 24 chr15 45355978 45356394 -56024127 - Charlie7 DNA MER1_type -2101 511 56 1933 182 35 56 chr15 45356527 45357038 -56023483 - L1MB8 LINE L1 0 6178 5675 1852 120 51 4 chr15 45357397 45357673 -56022848 - AluSx SINE Alu -19 293 5 399 264 54 87 chr15 45357682 45357959 -56022562 - L1MC/D LINE L1 -1985 5823 5556 2065 141 0 0 chr15 45357981 45358286 -56022235 - AluSg SINE Alu -5 305 1 3374 163 63 9 chr15 45358520 45359157 -56021364 - LTR51 LTR ERV1 0 671 1 282 258 45 22 chr15 45359160 45359249 -56021272 - L1MC/D LINE L1 -2082 4064 3974 1837 183 116 21 chr15 45359310 45359731 -56020790 + LTR2B LTR ERV1 30 490 0 2016 145 40 38 chr15 45359731 45360130 -56020391 + LTR23 LTR ERV1 37 436 -1 35 0 0 0 chr15 45360141 45360176 -56020345 + AT_rich Low_complexity Low_complexity 1 35 0 544 320 24 27 chr15 45360207 45360541 -56019980 - L1MC/D LINE L1 -2232 3914 3582 26 30 0 0 chr15 45360683 45360716 -56019805 + AT_rich Low_complexity Low_complexity 1 33 0 28 61 0 0 chr15 45360924 45360973 -56019548 + AT_rich Low_complexity Low_complexity 1 49 0 337 283 8 33 chr15 45361496 45361516 -56019005 + L1MC4 LINE L1 6593 6612 -1430 2235 100 3 41 chr15 45361516 45361835 -56018686 + AluSx SINE Alu 1 307 -5 337 283 8 33 chr15 45361835 45361934 -56018587 + L1MC4 LINE L1 6612 6709 -1333 448 181 0 19 chr15 45361934 45362039 -56018482 + (TA)n Simple_repeat Simple_repeat 2 104 0 23 54 0 0 chr15 45362686 45362723 -56017798 + AT_rich Low_complexity Low_complexity 1 37 0 325 241 12 12 chr15 45362882 45362965 -56017556 - MIR SINE MIR -69 193 111 250 228 108 18 chr15 45363059 45363186 -56017335 - MIR3 SINE MIR -74 134 9 243 125 0 0 chr15 45363277 45363317 -56017204 + (T)n Simple_repeat Simple_repeat 1 40 0 240 361 143 13 chr15 45363966 45364343 -56016178 + L2 LINE L2 2434 2859 -455 420 102 45 23 chr15 45364669 45364757 -56015764 + CT-rich Low_complexity Low_complexity 2 91 0 1711 160 38 17 chr15 45364765 45365052 -56015469 - AluJb SINE Alu -19 293 1 1348 80 0 43 chr15 45365149 45365337 -56015184 - AluSg/x SINE Alu -10 302 123 584 181 16 0 chr15 45365349 45365476 -56015045 - L1MC4 LINE L1 0 8042 7914 6779 129 15 4 chr15 45365495 45366744 -56013777 - L1MA3 LINE L1 0 7724 6462 4807 156 37 19 chr15 45366740 45367209 -56013312 - L1MA3 LINE L1 -2920 4645 4186 * 2446 80 3 0 chr15 45367209 45367511 -56013010 + AluSp SINE Alu 1 303 -10 4807 156 37 19 chr15 45367511 45368623 -56011898 - L1MA3 LINE L1 -3379 4186 3032 4109 152 31 16 chr15 45368634 45369373 -56011148 - L1PA16 LINE L1 -11 6155 5406 * 12273 180 40 23 chr15 45369361 45370182 -56010339 - L1MA3 LINE L1 -4518 3047 2241 2471 80 3 0 chr15 45370182 45370482 -56010039 - AluSc SINE Alu -6 303 3 12273 180 40 23 chr15 45370482 45372377 -56008144 - L1MA3 LINE L1 -5324 2241 9 232 188 0 0 chr15 45372372 45372420 -56008101 - L1MC4 LINE L1 -137 7905 7858 * 1623 173 132 29 chr15 45372424 45372870 -56007651 - LTR54B LTR ERV1 -6 492 1 855 192 29 0 chr15 45372870 45373042 -56007479 - L1MC4 LINE L1 -181 7861 7685 3176 160 2 22 chr15 45373055 45373594 -56006927 - MER44D DNA MER2_type -21 584 2 412 212 212 7 chr15 45373605 45373742 -56006779 - L1MC4 LINE L1 -366 7676 7512 920 218 26 79 chr15 45373792 45374173 -56006348 + LTR37A LTR ERV1 18 378 -48 2619 145 33 46 chr15 45374187 45374220 -56006301 - LTR54 LTR ERV1 0 510 478 2859 133 9 0 chr15 45374220 45374650 -56005871 + MER57B LTR ERV1 1 434 0 2619 145 33 46 chr15 45374650 45375133 -56005388 - LTR54 LTR ERV1 -32 478 1 2917 208 75 19 chr15 45375150 45375926 -56004595 - L1MC4 LINE L1 -514 7528 6710 1437 211 83 82 chr15 45375924 45376120 -56004401 - L1MC4 LINE L1 -1917 5891 5697 * 357 24 0 0 chr15 45376120 45376162 -56004359 + (TA)n Simple_repeat Simple_repeat 1 42 0 1437 211 83 82 chr15 45376162 45376459 -56004062 - L1MC4 LINE L1 -2111 5697 5402 746 173 8 0 chr15 45376459 45376586 -56003935 - FLAM_C SINE Alu -5 128 1 1437 211 83 82 chr15 45376586 45376634 -56003887 - L1MC4 LINE L1 -2406 5402 5356 2333 103 7 0 chr15 45376634 45376934 -56003587 - AluSx SINE Alu -10 302 1 1437 211 83 82 chr15 45376934 45377026 -56003495 - L1MC4 LINE L1 -2452 5356 5255 384 285 26 16 chr15 45377152 45377345 -56003176 - L1MC4 LINE L1 -1038 5108 4914 2021 119 3 7 chr15 45377352 45377646 -56002875 - AluSc SINE Alu 0 309 17 627 120 10 0 chr15 45377682 45377782 -56002739 + AluSg SINE Alu 1 101 -209 1732 174 4 0 chr15 45377920 45378195 -56002326 - AluSp SINE Alu -37 276 1 445 294 56 16 chr15 45378219 45378353 -56002168 - L1MC4 LINE L1 -1499 4647 4520 2169 104 0 28 chr15 45378353 45378671 -56001850 - AluSg SINE Alu -1 309 1 445 294 56 16 chr15 45378671 45378913 -56001608 - L1MC4 LINE L1 -1626 4520 4256 1044 190 99 18 chr15 45378942 45379226 -56001295 - LTR52 LTR ERVL -107 314 8 268 305 115 24 chr15 45379406 45379911 -56000610 - L1MC4 LINE L1 -2951 3195 2645 1280 170 28 45 chr15 45380147 45380394 -56000127 + AluJo SINE Alu 40 282 -30 1711 151 91 0 chr15 45380700 45381031 -55999490 - MER46B DNA MER2_type 0 236 1 581 128 0 0 chr15 45381472 45381566 -55998955 - AluSp/q SINE Alu -9 304 211 274 331 59 7 chr15 45381647 45381783 -55998738 - MIR SINE MIR 0 262 120 416 133 0 13 chr15 45382112 45382187 -55998334 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 1622 211 13 0 chr15 45382192 45382504 -55998017 - 7SLRNA srpRNA srpRNA -4 316 1 418 311 81 12 chr15 45383490 45383651 -55996870 - MIR3 SINE MIR -15 193 22 1484 205 120 28 chr15 45383662 45384086 -55996435 + MLT1C LTR MaLR 1 463 -4 405 58 0 0 chr15 45384363 45384415 -55996106 + (TG)n Simple_repeat Simple_repeat 2 53 0 21 0 0 0 chr15 45384612 45384633 -55995888 + AT_rich Low_complexity Low_complexity 1 21 0 736 207 0 0 chr15 45385175 45385315 -55995206 - MSTD LTR MaLR -8 388 249 2328 97 0 3 chr15 45385315 45385614 -55994907 - AluSp SINE Alu -15 298 1 4625 147 23 50 chr15 45385616 45386342 -55994179 - L1MA5 LINE L1 -262 6038 5294 198 0 0 0 chr15 45386342 45386364 -55994157 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 2243 100 0 0 chr15 45386366 45386655 -55993866 - AluSx SINE Alu -18 294 6 4625 147 23 50 chr15 45386655 45387142 -55993379 - L1MA5 LINE L1 -1007 5293 4870 1962 126 48 10 chr15 45387142 45387435 -55993086 + AluSx SINE Alu 1 304 -8 4625 147 23 50 chr15 45387435 45387975 -55992546 - L1MA5 LINE L1 -1430 4870 4317 21 0 0 0 chr15 45387994 45388015 -55992506 + AT_rich Low_complexity Low_complexity 1 21 0 13709 181 3 24 chr15 45388021 45389559 -55990962 - L1PB1 LINE L1 -8 6143 4574 483 15 44 0 chr15 45389559 45389627 -55990894 - L1PA3 LINE L1 0 6155 6085 13709 181 3 24 chr15 45389627 45391087 -55989434 - L1PB1 LINE L1 -1577 4574 3252 2213 99 20 0 chr15 45391087 45391381 -55989140 - AluSq SINE Alu -13 300 1 13709 181 3 24 chr15 45391381 45392468 -55988053 - L1PB1 LINE L1 -2899 3252 2144 5301 183 55 6 chr15 45392467 45393713 -55986808 - L1MA5 LINE L1 -1813 4333 3028 * 1998 140 0 7 chr15 45393726 45394051 -55986470 - AluSq SINE Alu 0 323 1 1367 142 0 14 chr15 45394053 45394265 -55986256 - AluSg/x SINE Alu -11 301 93 408 20 0 0 chr15 45394268 45394317 -55986204 + (CA)n Simple_repeat Simple_repeat 1 49 0 2926 160 17 2 chr15 45394321 45394847 -55985674 - MSTA-int LTR MaLR -1117 534 1 2245 149 88 8 chr15 45394847 45395243 -55985278 - MSTA LTR MaLR 0 428 1 8142 200 58 55 chr15 45395243 45395393 -55985128 - L1 LINE L1 -2730 4835 4687 2079 124 0 22 chr15 45395393 45395708 -55984813 - AluSg SINE Alu -2 308 1 8142 200 58 55 chr15 45395708 45396651 -55983870 - L1 LINE L1 -2878 4687 3749 1332 108 0 25 chr15 45396651 45396855 -55983666 - L1PA8 LINE L1 -1 6171 5973 8142 200 58 55 chr15 45396855 45397148 -55983373 - L1 LINE L1 -3816 3749 3458 1621 145 10 17 chr15 45397148 45397437 -55983084 + AluY SINE Alu 1 287 -24 8142 200 58 55 chr15 45397437 45397742 -55982779 - L1 LINE L1 -4107 3458 3155 2198 91 3 33 chr15 45397742 45398049 -55982472 - AluY SINE Alu -13 298 1 8142 200 58 55 chr15 45398049 45400482 -55980039 - L1 LINE L1 -4410 3155 11 265 362 64 11 chr15 45400894 45400988 -55979533 - L2 LINE L2 -4 3268 3170 341 366 43 24 chr15 45401061 45401225 -55979296 + L2 LINE L2 3074 3240 -32 261 314 0 0 chr15 45401368 45401454 -55979067 - L1M4 LINE L1 -2280 3866 3781 296 273 139 51 chr15 45401836 45402052 -55978469 - LTR16C LTR ERVL -1 490 256 670 236 152 28 chr15 45402060 45402241 -55978280 - L1ME LINE L1 -365 5801 5644 1835 179 0 3 chr15 45402241 45402538 -55977983 - AluSx SINE Alu -16 296 1 670 236 152 28 chr15 45402538 45402549 -55977972 - L1ME LINE L1 -522 5644 5636 2468 122 5 19 chr15 45402549 45402918 -55977603 + THE1B LTR MaLR 1 364 0 670 236 152 28 chr15 45402918 45402938 -55977583 - L1ME LINE L1 -530 5636 5620 2002 143 0 7 chr15 45402938 45403231 -55977290 + AluSx SINE Alu 1 291 -21 670 236 152 28 chr15 45403231 45403453 -55977068 - L1ME LINE L1 -546 5620 5313 8972 181 27 9 chr15 45403568 45404680 -55975841 - L1MA4A LINE L1 -308 6697 5606 2313 107 0 13 chr15 45404680 45404997 -55975524 + AluSq SINE Alu 1 313 0 8972 181 27 9 chr15 45404997 45406664 -55973857 - L1MA4A LINE L1 -1399 5606 3868 4941 148 49 15 chr15 45406676 45408093 -55972428 - L1PA16 LINE L1 -9 6157 4692 801 294 4 7 chr15 45408126 45408395 -55972126 - L1PA12 LINE L1 -5132 2449 2182 1884 151 39 39 chr15 45408585 45408922 -55971599 + MER1B DNA MER1_type 1 337 0 287 323 0 0 chr15 45408979 45409075 -55971446 - L1PA12 LINE L1 -5400 2181 2086 1122 338 29 39 chr15 45409207 45409822 -55970699 - L1PA12 LINE L1 -6177 1397 789 10832 191 86 44 chr15 45409851 45411960 -55968561 - L1MA4A LINE L1 -2966 3882 1864 480 35 0 0 chr15 45411960 45412018 -55968503 + (TA)n Simple_repeat Simple_repeat 2 59 0 2140 138 0 3 chr15 45412018 45412323 -55968198 - AluSx SINE Alu -8 304 1 10832 191 86 44 chr15 45412323 45413913 -55966608 - L1MA4A LINE L1 -4983 1865 28 1843 152 139 16 chr15 45414398 45414779 -55965742 - MSTA LTR MaLR 0 428 1 8286 191 30 5 chr15 45414779 45416389 -55964132 - MSTA-int LTR MaLR 0 1651 1 2201 123 129 11 chr15 45416391 45416772 -55963749 - MSTA LTR MaLR -2 426 1 454 236 73 9 chr15 45417631 45417741 -55962780 - L1MC4 LINE L1 -607 7435 7319 2306 119 3 6 chr15 45417742 45418094 -55962427 - THE1B LTR MaLR -13 351 1 2265 105 0 0 chr15 45418099 45418393 -55962128 - AluSg SINE Alu -16 294 1 852 203 42 97 chr15 45418394 45418766 -55961755 - L1MC4 LINE L1 -715 7327 6954 239 242 265 23 chr15 45419612 45419744 -55960777 + MIR SINE MIR 28 191 -71 2375 87 0 0 chr15 45420793 45421103 -55959418 - AluSg SINE Alu 0 310 1 21 71 0 0 chr15 45421152 45421194 -55959327 + AT_rich Low_complexity Low_complexity 1 42 0 318 249 114 0 chr15 45421919 45422027 -55958494 + MIR SINE MIR 35 141 -67 1289 332 159 19 chr15 45423681 45425069 -55955452 - L2 LINE L2 -1 3271 1685 269 250 15 0 chr15 45425447 45425515 -55955006 - MIR3 SINE MIR -7 201 133 365 236 91 0 chr15 45425515 45425625 -55954896 - LTR33 LTR ERVL 0 521 402 1003 282 151 19 chr15 45428615 45429126 -55951395 - L2 LINE L2 -19 3294 2708 188 67 33 0 chr15 45429197 45429227 -55951294 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 265 262 121 54 chr15 45431090 45431239 -55949282 + MIR SINE MIR 41 199 -63 4843 42 5 3 chr15 45431383 45431973 -55948548 + LTR10C LTR ERV1 1 591 0 360 400 56 0 chr15 45432180 45432395 -55948126 - MIR SINE MIR -34 228 2 189 296 88 32 chr15 45432619 45432744 -55947777 - L2 LINE L2 -20 3293 3162 1021 212 69 69 chr15 45432770 45433162 -55947359 + L1M4 LINE L1 3587 3978 -2168 266 268 5 132 chr15 45433157 45433262 -55947259 + L1ME3 LINE L1 5962 6030 -132 * 1110 162 29 0 chr15 45433262 45433472 -55947049 - L1MB1 LINE L1 -1 6167 5952 266 268 5 132 chr15 45433472 45433571 -55946950 + L1ME3 LINE L1 6030 6140 -22 24 32 0 0 chr15 45433717 45433748 -55946773 + AT_rich Low_complexity Low_complexity 1 31 0 2171 110 3 3 chr15 45433748 45434040 -55946481 + AluSx SINE Alu 1 292 -20 186 43 0 0 chr15 45434044 45434067 -55946454 + (CA)n Simple_repeat Simple_repeat 2 24 0 246 300 0 33 chr15 45434074 45434194 -55946327 - L1MB1 LINE L1 -1920 5888 5773 590 299 57 4 chr15 45434279 45434629 -55945892 - L1ME4a LINE L1 -295 5826 5450 431 92 0 0 chr15 45435210 45435275 -55945246 - MER41B LTR ERV1 -90 545 481 207 0 0 0 chr15 45435605 45435628 -55944893 + (CAT)n Simple_repeat Simple_repeat 1 23 0 33 25 0 0 chr15 45436269 45436309 -55944212 + AT_rich Low_complexity Low_complexity 1 40 0 919 199 135 13 chr15 45436643 45436955 -55943566 - L1MC4 LINE L1 0 8042 7693 200 233 0 0 chr15 45436959 45437002 -55943519 + T-rich Low_complexity Low_complexity 1 43 0 688 246 36 25 chr15 45437110 45437387 -55943134 - L1MC4 LINE L1 -373 7669 7390 473 267 85 48 chr15 45438028 45438380 -55942141 + HAL1 LINE L1 1296 1660 -847 462 248 0 0 chr15 45438382 45438499 -55942022 + HAL1 LINE L1 1697 1813 -694 378 263 34 62 chr15 45438633 45438812 -55941709 + HAL1 LINE L1 1920 2093 -414 636 274 177 26 chr15 45439047 45439386 -55941135 - L2 LINE L2 -1 3312 2923 257 246 0 15 chr15 45439424 45439489 -55941032 - MIR SINE MIR -77 185 122 192 342 0 81 chr15 45439535 45439646 -55940875 - L2 LINE L2 -188 3084 2983 324 0 0 0 chr15 45439724 45439760 -55940761 + (TG)n Simple_repeat Simple_repeat 1 36 0 234 0 0 0 chr15 45439759 45439785 -55940736 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 1306 36 21 10 chr15 45439785 45439977 -55940544 - L1P1 LINE L1 -708 5447 5254 189 250 21 0 chr15 45440889 45440937 -55939584 - L2 LINE L2 0 3272 3224 264 290 145 8 chr15 45442276 45442379 -55938142 - MIR SINE MIR -63 145 32 37367 67 6 49 chr15 45442802 45444536 -55935985 - L1PA3 LINE L1 0 6155 4347 3185 34 0 3 chr15 45444536 45444920 -55935601 - L1PA3 LINE L1 -3 6152 5770 393 55 0 0 chr15 45444924 45444979 -55935542 - L1PA3 LINE L1 0 6155 6101 37367 67 6 49 chr15 45444979 45449680 -55930841 - L1PA3 LINE L1 -1811 4344 1 952 267 81 26 chr15 45449893 45450371 -55930150 - MLT1H LTR MaLR 0 549 12 2314 137 146 2 chr15 45451009 45451433 -55929088 - MER31A LTR ERV1 0 485 1 504 240 178 45 chr15 45452042 45452329 -55928192 - L2 LINE L2 -1 3312 2988 24 0 0 0 chr15 45453532 45453556 -55926965 + AT_rich Low_complexity Low_complexity 1 24 0 525 321 126 16 chr15 45453704 45454022 -55926499 - L3 LINE CR1 -123 1454 1102 819 225 115 5 chr15 45455471 45455680 -55924841 + MIR SINE MIR 3 234 -28 277 281 168 87 chr15 45456070 45456255 -55924266 + MIR SINE MIR 28 227 -35 184 239 30 45 chr15 45456358 45456425 -55924096 + MER5A DNA MER1_type 10 75 -114 * 520 223 182 7 chr15 45456369 45456517 -55924004 - MER5A DNA MER1_type -7 182 9 355 224 238 14 chr15 45457826 45457969 -55922552 - LTR33 LTR ERVL -5 516 342 247 302 23 0 chr15 45457998 45458084 -55922437 - LTR33 LTR ERVL -343 178 91 6206 120 73 12 chr15 45458084 45459193 -55921328 - Tigger3b DNA MER2_type 0 1231 55 313 238 36 0 chr15 45459221 45459305 -55921216 - LTR33 LTR ERVL -427 94 8 28 0 0 0 chr15 45460761 45460789 -55919732 + AT_rich Low_complexity Low_complexity 1 28 0 198 91 0 0 chr15 45460862 45460895 -55919626 + (T)n Simple_repeat Simple_repeat 1 33 0 985 135 60 22 chr15 45460916 45461101 -55919420 - AluY SINE Alu -1 310 119 2790 16 0 0 chr15 45461114 45461425 -55919096 - AluYa5 SINE Alu 0 311 1 476 219 18 9 chr15 45461477 45461591 -55918930 + AluY SINE Alu 3 117 -194 234 276 0 16 chr15 45461785 45461912 -55918609 + (TTA)n Simple_repeat Simple_repeat 1 125 0 1988 99 7 3 chr15 45462028 45462312 -55918209 + AluY SINE Alu 19 303 -8 2480 53 3 0 chr15 45462476 45462780 -55917741 + AluY SINE Alu 1 305 -6 611 282 137 34 chr15 45463136 45463280 -55917241 + MIR SINE MIR 3 131 -131 2026 127 21 26 chr15 45463280 45463657 -55916864 - THE1C LTR MaLR 0 375 1 611 282 137 34 chr15 45463657 45463746 -55916775 + MIR SINE MIR 131 260 -2 309 272 189 20 chr15 45463956 45464173 -55916348 + MIR SINE MIR 14 262 0 226 309 39 83 chr15 45464843 45465067 -55915454 - L2 LINE L2 -278 2994 2783 2285 109 0 0 chr15 45465327 45465630 -55914891 - AluSc SINE Alu -6 303 1 418 326 88 6 chr15 45466235 45466416 -55914105 - MER117 DNA MER1_type -1 196 1 695 291 60 87 chr15 45467453 45467964 -55912557 + L2 LINE L2 2774 3272 0 21 0 0 0 chr15 45468938 45468959 -55911562 + AT_rich Low_complexity Low_complexity 1 21 0 1026 314 151 65 chr15 45469180 45470363 -55910158 + L2 LINE L2 1198 2481 -833 594 334 114 60 chr15 45470367 45470904 -55909617 + L2 LINE L2 2670 3272 0 390 317 45 60 chr15 45472028 45472293 -55908228 + L2 LINE L2 3028 3288 -25 649 277 95 40 chr15 45472564 45472889 -55907632 + LTR16C LTR ERVL 149 491 0 252 316 79 0 chr15 45473913 45473989 -55906532 + MIR3 SINE MIR 9 90 -118 1374 162 0 0 chr15 45473989 45474205 -55906316 - AluSg/x SINE Alu -1 311 96 207 69 0 0 chr15 45475119 45475148 -55905373 + (TG)n Simple_repeat Simple_repeat 2 30 0 199 349 63 0 chr15 45475762 45475825 -55904696 - L2 LINE L2 -60 3212 3146 921 201 98 5 chr15 45476465 45476659 -55903862 + MER58A DNA MER1_type 10 221 -3 1723 166 41 3 chr15 45476862 45477152 -55903369 + AluSx SINE Alu 1 381 0 423 75 0 62 chr15 45477152 45477232 -55903289 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 232 411 26 22 chr15 45477261 45477487 -55903034 - L2 LINE L2 -237 3035 2809 307 323 102 56 chr15 45477630 45478023 -55902498 - L2 LINE L2 0 3272 2862 299 211 0 13 chr15 45478186 45478262 -55902259 + GA-rich Low_complexity Low_complexity 2 76 0 192 40 0 0 chr15 45478355 45478380 -55902141 + (TC)n Simple_repeat Simple_repeat 2 26 0 182 293 52 0 chr15 45478569 45478627 -55901894 + L2 LINE L2 2698 2758 -556 2550 180 10 2 chr15 45479166 45479649 -55900872 - L1PA15 LINE L1 -2 6163 5677 708 219 12 18 chr15 45479649 45479808 -55900713 - AluSq SINE Alu -14 299 140 2023 143 0 3 chr15 45480089 45480389 -55900132 - AluSg SINE Alu -11 299 1 13510 208 25 4 chr15 45480390 45483200 -55897321 - L1PA15 LINE L1 -478 5687 2938 725 0 0 12 chr15 45483200 45483286 -55897235 + (TTTC)n Simple_repeat Simple_repeat 1 85 0 13510 208 25 4 chr15 45483286 45484019 -55896502 - L1PA15 LINE L1 -3227 2938 2055 2646 91 13 11 chr15 45484019 45484393 -55896128 + THE1C LTR MaLR 1 375 0 13510 208 25 4 chr15 45484393 45484622 -55895899 - L1PA15 LINE L1 -4110 2055 1832 469 250 102 49 chr15 45485468 45485657 -55894864 - MIR SINE MIR -56 206 6 202 188 0 0 chr15 45487325 45487357 -55893164 + polypurine Low_complexity Low_complexity 4 35 0 729 295 66 16 chr15 45487798 45488164 -55892357 - MLT1I LTR MaLR -21 388 5 283 297 123 0 chr15 45489834 45489972 -55890549 - L2 LINE L2 0 3313 3159 250 354 126 37 chr15 45490404 45490650 -55889871 - L2 LINE L2 -22 3250 2983 475 287 133 10 chr15 45492138 45492333 -55888188 + L3 LINE CR1 1014 1232 -345 404 243 0 10 chr15 45492753 45492856 -55887665 + LTR67 LTR ERVL 456 557 0 6095 135 6 19 chr15 45492929 45493108 -55887413 - L1MA5 LINE L1 0 6300 6120 2118 94 52 0 chr15 45493108 45493396 -55887125 - AluSp SINE Alu -10 303 1 6095 135 6 19 chr15 45493396 45494650 -55885871 - L1MA5 LINE L1 -180 6120 4885 307 311 95 33 chr15 45495311 45495617 -55884904 + LTR16C LTR ERVL 167 491 0 1112 232 40 88 chr15 45495750 45496172 -55884349 + MLT2B3 LTR ERVL 153 554 0 419 263 167 0 chr15 45496238 45496352 -55884169 + L3 LINE CR1 1238 1370 -207 547 309 12 0 chr15 45496572 45496737 -55883784 - Charlie8 DNA MER1_type -2152 265 99 207 342 105 26 chr15 45497099 45497213 -55883308 + L2 LINE L2 3170 3292 -21 1121 290 74 20 chr15 45498063 45498470 -55882051 - L2 LINE L2 -2 3311 2883 24 53 0 0 chr15 45499407 45499445 -55881076 + AT_rich Low_complexity Low_complexity 1 38 0 482 215 70 59 chr15 45499600 45499786 -55880735 + L1MC5 LINE L1 7503 7690 -271 1969 63 0 0 chr15 45499864 45500118 -55880403 + L1PA5 LINE L1 5901 6154 0 622 280 98 0 chr15 45500282 45500518 -55880003 - LTR33 LTR ERVL -260 261 3 332 246 131 31 chr15 45500590 45500720 -55879801 - MIR3 SINE MIR -3 205 63 6458 51 9 2 chr15 45500741 45501559 -55878962 + L1PA7 LINE L1 5332 6154 0 516 248 128 0 chr15 45501777 45502059 -55878462 - L1ME4a LINE L1 -31 6090 5773 201 122 20 61 chr15 45502121 45502170 -55878351 + (TA)n Simple_repeat Simple_repeat 2 48 0 25 0 0 0 chr15 45502188 45502213 -55878308 + AT_rich Low_complexity Low_complexity 1 25 0 276 315 39 16 chr15 45502249 45502376 -55878145 + MIR3 SINE MIR 11 140 -68 2209 131 0 10 chr15 45502432 45502744 -55877777 - AluSx SINE Alu -3 309 1 695 287 126 0 chr15 45504510 45504893 -55875628 - L2 LINE L2 -93 3220 2772 261 200 18 0 chr15 45504971 45505026 -55875495 - L2 LINE L2 -827 2487 2432 219 188 0 42 chr15 45505088 45505136 -55875385 - MIR3 SINE MIR -2 206 161 2417 80 0 10 chr15 45506167 45506480 -55874041 + AluY SINE Alu 2 311 0 22 0 0 0 chr15 45507349 45507371 -55873150 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr15 45508249 45508281 -55872240 + AT_rich Low_complexity Low_complexity 1 32 0 2273 89 31 0 chr15 45509746 45510039 -55870482 - AluSg SINE Alu -7 303 2 21 0 0 0 chr15 45510275 45510296 -55870225 + AT_rich Low_complexity Low_complexity 1 21 0 258 105 0 0 chr15 45512094 45512132 -55868389 + (ATG)n Simple_repeat Simple_repeat 1 38 0 22 56 0 0 chr15 45513195 45513231 -55867290 + AT_rich Low_complexity Low_complexity 1 36 0 473 239 95 112 chr15 45513807 45514295 -55866226 + Charlie8 DNA MER1_type 1 470 -1947 987 156 0 40 chr15 45514295 45514468 -55866053 + FRAM SINE Alu 1 163 -13 609 224 70 0 chr15 45515401 45515557 -55864964 - MIR SINE MIR -3 259 93 288 0 0 0 chr15 45515578 45515610 -55864911 + (CA)n Simple_repeat Simple_repeat 1 32 0 438 156 52 0 chr15 45516647 45516743 -55863778 - L1MB7 LINE L1 -13 6171 6071 587 291 79 23 chr15 45516868 45517222 -55863299 - MARNA DNA Mariner -126 460 87 21 0 0 0 chr15 45518436 45518457 -55862064 + AT_rich Low_complexity Low_complexity 1 21 0 840 174 0 7 chr15 45519338 45519476 -55861045 - AluJo SINE Alu -6 306 170 725 131 0 57 chr15 45519477 45519599 -55860922 - AluJo SINE Alu -197 115 1 32 67 0 0 chr15 45520111 45520171 -55860350 + AT_rich Low_complexity Low_complexity 1 60 0 4812 125 46 2 chr15 45520199 45521005 -55859516 - L1PA16 LINE L1 -9 6472 5632 4355 55 37 0 chr15 45521017 45521582 -55858939 - L1PA7 LINE L1 0 6154 5569 11254 111 19 52 chr15 45521586 45524072 -55856449 - L1PA16 LINE L1 -3961 2500 5 3801 211 15 2 chr15 45524077 45524964 -55855557 - L1P LINE L1 -815 6034 5137 1079 172 24 0 chr15 45524974 45525143 -55855378 - AluSx SINE Alu -139 173 1 6080 175 31 16 chr15 45525144 45526945 -55853576 - L1PA15-16 LINE L1 -3101 3748 1915 21 0 0 0 chr15 45527854 45527875 -55852646 + AT_rich Low_complexity Low_complexity 1 21 0 326 361 0 0 chr15 45529277 45529385 -55851136 - MIR3 SINE MIR -6 202 95 3511 139 53 2 chr15 45529514 45530103 -55850418 + LTR31 LTR ERV1 1 619 0 2342 108 0 0 chr15 45531228 45531534 -55848987 + AluSq SINE Alu 1 306 -7 21 57 0 0 chr15 45532782 45532817 -55847704 + AT_rich Low_complexity Low_complexity 1 35 0 192 97 0 0 chr15 45533337 45533368 -55847153 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 826 206 106 0 chr15 45533646 45533835 -55846686 + MER3 DNA MER1_type 1 209 0 1130 278 28 7 chr15 45535082 45535368 -55845153 - LTR16A LTR ERVL -5 445 154 1271 253 130 40 chr15 45535368 45535914 -55844607 - MLT1G1 LTR MaLR 0 595 1 1784 209 70 5 chr15 45536090 45536487 -55844034 + MER110 LTR ERV1 57 479 -12 42338 34 23 2 chr15 45537726 45543745 -55836776 + L1PA2 LINE L1 2 6155 0 22 0 0 0 chr15 45543980 45544002 -55836519 + AT_rich Low_complexity Low_complexity 1 22 0 802 108 48 0 chr15 45544508 45544694 -55835827 + L1MA7 LINE L1 5986 6286 -5 21 36 0 0 chr15 45544694 45544722 -55835799 + AT_rich Low_complexity Low_complexity 1 28 0 10034 192 12 5 chr15 45544735 45545619 -55834902 - L1PA15 LINE L1 -4 6161 5284 1870 147 155 13 chr15 45545619 45545994 -55834527 + MSTA LTR MaLR 1 428 0 10034 192 12 5 chr15 45545994 45547978 -55832543 - L1PA15 LINE L1 -881 5284 3275 32 43 0 0 chr15 45550469 45550515 -55830006 + AT_rich Low_complexity Low_complexity 1 46 0 745 245 116 37 chr15 45551309 45551706 -55828815 + L1M4c LINE L1 1133 1625 -4759 2267 67 44 0 chr15 45552451 45552749 -55827772 - AluY SINE Alu 0 311 1 726 340 52 17 chr15 45553134 45553425 -55827096 - L3 LINE CR1 -124 1453 1153 1220 187 78 34 chr15 45553425 45553693 -55826828 + MLT1A2 LTR MaLR 95 374 0 269 389 191 7 chr15 45553696 45553999 -55826522 - L3 LINE CR1 -941 636 278 26 0 0 0 chr15 45554114 45554140 -55826381 + AT_rich Low_complexity Low_complexity 1 26 0 345 139 0 109 chr15 45555113 45555315 -55825206 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 265 260 6 29 chr15 45555273 45555446 -55825075 + (AAATG)n Simple_repeat Simple_repeat 2 170 0 * 357 141 0 96 chr15 45555479 45555678 -55824843 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 245 315 69 15 chr15 45555681 45555811 -55824710 - MIR SINE MIR -60 202 66 1836 120 43 4 chr15 45557956 45558232 -55822289 - AluSx SINE Alu -25 287 1 3069 207 40 8 chr15 45559523 45560281 -55820240 - L1M4 LINE L1 -996 5150 4369 9716 152 46 11 chr15 45560289 45563047 -55817474 - L1MA1 LINE L1 -171 7550 4688 4625 166 23 1 chr15 45563045 45563836 -55816685 - L1MA1 LINE L1 -5707 1858 1051 * 28 29 0 0 chr15 45563846 45563881 -55816640 + AT_rich Low_complexity Low_complexity 1 35 0 329 295 79 39 chr15 45564197 45564239 -55816282 + MLT1J LTR MaLR 207 246 -265 2182 176 19 35 chr15 45564239 45564672 -55815849 - MSTB LTR MaLR 0 426 1 329 295 79 39 chr15 45564672 45564872 -55815649 + MLT1J LTR MaLR 246 371 -140 263 308 0 19 chr15 45565013 45565117 -55815404 + L1 LINE L1 4089 4190 -1956 23 0 0 0 chr15 45565448 45565471 -55815050 + AT_rich Low_complexity Low_complexity 1 23 0 774 153 53 7 chr15 45566616 45566766 -55813755 + Tigger1 DNA MER2_type 1 157 -2261 * 1306 154 9 0 chr15 45566755 45566969 -55813552 + Tigger1 DNA MER2_type 2202 2417 -1 203 256 198 35 chr15 45567736 45567822 -55812699 - L2 LINE L2 0 3272 3173 750 308 61 4 chr15 45568632 45568879 -55811642 + MIR SINE MIR 2 262 0 14643 188 29 8 chr15 45568887 45573028 -55807493 + L1PB3 LINE L1 2635 6861 -9 832 302 37 39 chr15 45573379 45573789 -55806732 + MLT1I LTR MaLR 1 409 0 301 309 71 16 chr15 45574340 45574466 -55806055 + MIR SINE MIR 19 151 -57 3793 160 82 28 chr15 45574656 45575399 -55805122 + LTR39 LTR ERV1 1 783 0 21 0 0 0 chr15 45575714 45575735 -55804786 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr15 45576852 45576875 -55803646 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr15 45577275 45577296 -55803225 + AT_rich Low_complexity Low_complexity 1 21 0 260 255 291 14 chr15 45577351 45577492 -55803029 - MER5A DNA MER1_type -1 188 9 211 296 57 0 chr15 45577559 45577647 -55802874 + MIR SINE MIR 127 219 -43 * 1681 270 107 2 chr15 45577640 45578180 -55802341 - L2 LINE L2 -1764 1550 954 226 231 39 67 chr15 45578183 45578287 -55802234 - L1M4 LINE L1 -3390 2756 2656 265 257 62 28 chr15 45578527 45578671 -55801850 - L1M4 LINE L1 -3783 2363 2215 42379 35 21 1 chr15 45579372 45585403 -55795118 + L1PA2 LINE L1 1 6155 0 269 327 64 26 chr15 45585436 45585592 -55794929 + L1MCc LINE L1 1180 1341 -5082 17440 186 28 13 chr15 45585655 45589618 -55790903 - L1PA13 LINE L1 -1466 5331 1254 180 0 0 0 chr15 45589618 45589638 -55790883 + (CAG)n Simple_repeat Simple_repeat 1 20 0 17440 186 28 13 chr15 45589638 45590912 -55789609 - L1PA13 LINE L1 -5543 1254 1 181 0 33 33 chr15 45591027 45591057 -55789464 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 1558 194 71 7 chr15 45591084 45591464 -55789057 - L1ME1 LINE L1 -3 6163 5769 787 308 94 19 chr15 45591487 45592006 -55788515 - HAL1 LINE L1 -808 1699 1142 182 321 25 49 chr15 45592251 45592332 -55788189 + L2 LINE L2 3194 3272 0 399 308 56 7 chr15 45592713 45592856 -55787665 + MIR SINE MIR 11 160 -102 252 137 0 0 chr15 45592892 45592943 -55787578 + (TA)n Simple_repeat Simple_repeat 2 52 0 267 197 45 30 chr15 45592955 45593021 -55787500 + MIR SINE MIR 196 262 0 362 271 122 0 chr15 45593157 45593264 -55787257 + MIR SINE MIR 122 241 -21 248 309 86 0 chr15 45593603 45593684 -55786837 - MIR SINE MIR -143 119 32 330 67 0 0 chr15 45594348 45594393 -55786128 + (TG)n Simple_repeat Simple_repeat 1 45 0 903 324 160 21 chr15 45596356 45596501 -55784020 + L2 LINE L2 2361 2484 -829 2117 109 19 53 chr15 45596501 45596876 -55783645 + THE1B LTR MaLR 1 362 -2 903 324 160 21 chr15 45596876 45597488 -55783033 + L2 LINE L2 2484 3235 -78 212 196 0 22 chr15 45597679 45597725 -55782796 + GA-rich Low_complexity Low_complexity 2 46 0 306 393 47 9 chr15 45597912 45598126 -55782395 - L2 LINE L2 -540 2774 2553 346 316 71 37 chr15 45599371 45599535 -55780986 + L2 LINE L2 2762 2928 -344 457 325 40 7 chr15 45599548 45599699 -55780822 + L2 LINE L2 3158 3313 0 3192 186 28 0 chr15 45599837 45600146 -55780375 + L1PA15 LINE L1 4082 4381 -1765 345 62 0 0 chr15 45600146 45600194 -55780327 + (CA)n Simple_repeat Simple_repeat 1 48 0 3192 186 28 0 chr15 45600194 45600496 -55780025 + L1PA15 LINE L1 4381 4710 -1436 1389 205 23 4 chr15 45600496 45600755 -55779766 + AluJo SINE Alu 1 264 -48 5179 127 58 0 chr15 45600773 45602182 -55778339 + L1PA15 LINE L1 4703 6165 0 28 0 0 0 chr15 45602229 45602257 -55778264 + AT_rich Low_complexity Low_complexity 1 28 0 261 352 93 6 chr15 45602957 45603119 -55777402 + L2 LINE L2 2709 2884 -430 37 0 0 0 chr15 45603145 45603182 -55777339 + AT_rich Low_complexity Low_complexity 1 37 0 1307 275 93 24 chr15 45603327 45603866 -55776655 + L1MC4 LINE L1 5387 5962 -1846 2287 87 0 3 chr15 45604094 45604392 -55776129 - AluY SINE Alu -14 297 1 306 0 0 0 chr15 45605507 45605541 -55774980 + (GA)n Simple_repeat Simple_repeat 2 35 0 192 234 0 0 chr15 45605541 45605588 -55774933 + (TG)n Simple_repeat Simple_repeat 2 48 0 424 355 18 0 chr15 45605944 45606110 -55774411 - MIR3 SINE MIR -9 199 31 195 139 0 0 chr15 45606635 45606671 -55773850 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 71 0 0 chr15 45608377 45608419 -55772102 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr15 45608915 45608950 -55771571 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr15 45609194 45609221 -55771300 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr15 45609350 45609371 -55771150 + AT_rich Low_complexity Low_complexity 1 21 0 354 295 45 0 chr15 45609534 45609646 -55770875 + MIR3 SINE MIR 87 203 -5 189 147 0 0 chr15 45610700 45610734 -55769787 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 317 276 10 31 chr15 45612992 45613090 -55767431 + L1MC4 LINE L1 6614 6709 -1333 * 328 211 58 67 chr15 45613020 45613124 -55767397 - L1MC4 LINE L1 -1326 6716 6614 413 61 0 15 chr15 45613124 45613190 -55767331 + (GA)n Simple_repeat Simple_repeat 2 66 0 412 270 26 9 chr15 45613190 45613305 -55767216 + MER5B DNA MER1_type 59 175 -3 589 216 43 7 chr15 45613562 45613701 -55766820 + L2 LINE L2 2651 2794 -520 436 231 54 8 chr15 45615816 45615946 -55764575 + MER103 DNA DNA 22 157 -9 23 0 0 0 chr15 45616000 45616023 -55764498 + AT_rich Low_complexity Low_complexity 1 23 0 214 308 64 39 chr15 45617792 45617870 -55762651 - L2 LINE L2 -52 3220 3141 35 24 0 0 chr15 45618291 45618333 -55762188 + AT_rich Low_complexity Low_complexity 1 42 0 793 260 24 37 chr15 45620012 45620258 -55760263 - MIR SINE MIR -19 243 1 281 308 9 47 chr15 45621309 45621416 -55759105 + L2 LINE L2 3208 3310 -3 3828 188 92 4 chr15 45621459 45622300 -55758221 - MER63C DNA MER1_type -2 928 14 572 266 0 0 chr15 45622312 45622436 -55758085 + MER94 DNA DNA 10 133 -1 1778 124 11 0 chr15 45623518 45623791 -55756730 - L1PA16 LINE L1 -6 6160 5885 740 115 25 0 chr15 45623953 45624075 -55756446 + L1MA5A LINE L1 6173 6297 0 234 325 96 0 chr15 45625755 45625838 -55754683 - MIR SINE MIR -85 123 33 344 227 7 73 chr15 45626642 45626792 -55753729 + T-rich Low_complexity Low_complexity 3 142 0 322 321 36 18 chr15 45627184 45627352 -55753169 - L3b LINE CR1 -89 1494 1324 663 211 50 96 chr15 45629269 45629487 -55751034 - MER63A DNA MER1_type -2 208 1 728 116 21 2 chr15 45631397 45631631 -55748890 + AluSx SINE Alu 3 289 -20 265 298 228 44 chr15 45632859 45633016 -55747505 + L2 LINE L2 2578 2705 -609 2117 122 10 0 chr15 45633016 45633311 -55747210 + AluSx SINE Alu 1 298 -14 265 298 228 44 chr15 45633311 45633381 -55747140 + L2 LINE L2 2705 2847 -467 22 0 0 0 chr15 45634086 45634108 -55746413 + AT_rich Low_complexity Low_complexity 1 22 0 1974 119 10 29 chr15 45634871 45635181 -55745340 - AluSx SINE Alu -8 304 1 198 351 46 46 chr15 45635908 45636059 -55744462 - MER5A DNA MER1_type -37 152 2 356 311 33 25 chr15 45635909 45636031 -55744490 + MER5B DNA MER1_type 40 162 -16 233 350 136 27 chr15 45636181 45636438 -55744083 - L2 LINE L2 -453 2861 2577 370 91 0 104 chr15 45636540 45636617 -55743904 - AluS SINE Alu -234 69 1 940 200 17 0 chr15 45637003 45637178 -55743343 - AluSg/x SINE Alu -1 309 132 2147 123 0 3 chr15 45637178 45637486 -55743035 - AluSx SINE Alu -5 307 1 585 76 13 0 chr15 45637900 45637979 -55742542 - MADE1 DNA Mariner 0 80 1 23 54 0 0 chr15 45638898 45638935 -55741586 + AT_rich Low_complexity Low_complexity 1 37 0 907 262 27 0 chr15 45639327 45639548 -55740973 + MIR SINE MIR 36 262 0 541 220 55 0 chr15 45640116 45640225 -55740296 + MIR3 SINE MIR 82 196 -12 181 308 75 47 chr15 45642812 45642919 -55737602 + L2 LINE L2 3197 3306 -7 289 323 203 23 chr15 45643256 45643389 -55737132 - MIR3 SINE MIR -6 202 46 1263 237 164 68 chr15 45645120 45645609 -55734912 - MLT1F LTR MaLR 0 542 7 3670 150 24 3 chr15 45645845 45646430 -55734091 + MSTA-int LTR MaLR 1055 1651 0 1317 122 15 5 chr15 45646430 45646627 -55733894 + MSTA LTR MaLR 1 199 -227 7517 29 1 0 chr15 45646627 45648112 -55732409 + L1PA4 LINE L1 4670 6155 0 381 237 62 0 chr15 45648144 45648241 -55732280 + MER5A DNA MER1_type 9 111 -78 1516 143 4 12 chr15 45648286 45648531 -55731990 + MSTA LTR MaLR 185 427 -1 1805 260 20 24 chr15 45648539 45649089 -55731432 + L1ME1 LINE L1 5610 6157 -9 1283 275 94 8 chr15 45649096 45649893 -55730628 + L1ME LINE L1 1850 2676 -3539 668 285 40 10 chr15 45649897 45650097 -55730424 - MER58C DNA MER1_type -4 211 6 1426 205 80 45 chr15 45650104 45650528 -55729993 + L1ME LINE L1 2673 3111 -3104 313 211 95 21 chr15 45650521 45650616 -55729905 + L1MC4 LINE L1 7914 8015 -27 * 340 233 147 69 chr15 45651083 45651199 -55729322 - MER5B DNA MER1_type -1 177 53 4611 193 13 8 chr15 45651985 45652933 -55727588 - L1PA13 LINE L1 -3146 3651 2700 880 148 0 0 chr15 45652936 45653071 -55727450 - L1PA13 LINE L1 -6190 597 463 1432 199 0 0 chr15 45653079 45653355 -55727166 - L1PA15-16 LINE L1 -4040 2809 2534 1916 168 37 0 chr15 45653360 45653657 -55726864 + AluSx SINE Alu 3 310 -2 400 180 5 0 chr15 45653657 45653743 -55726778 + L1P LINE L1 2392 2480 -3666 2333 242 85 7 chr15 45653824 45654598 -55725923 + L1ME LINE L1 4517 5351 -864 481 184 0 0 chr15 45654598 45654674 -55725847 + FRAM SINE Alu 77 152 -24 446 161 11 0 chr15 45654698 45654785 -55725736 + L1ME LINE L1 5332 5419 -816 * 911 172 25 6 chr15 45654782 45654939 -55725582 + MST-int LTR MaLR 1179 1338 -313 772 209 120 4 chr15 45654934 45655159 -55725362 + L1ME LINE L1 5423 5673 -562 * 2615 153 7 5 chr15 45655161 45655586 -55724935 + MSTB LTR MaLR 1 426 0 4923 178 7 3 chr15 45655586 45656452 -55724069 + MSTB-int LTR MaLR 1 869 -782 232 279 23 23 chr15 45657348 45657434 -55723087 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 289 155 35 0 chr15 45657525 45657583 -55722938 + (TATG)n Simple_repeat Simple_repeat 3 62 0 345 24 0 0 chr15 45657917 45657959 -55722562 + (CA)n Simple_repeat Simple_repeat 2 43 0 499 245 28 63 chr15 45658182 45658325 -55722196 + L2 LINE L2 346 483 -2831 356 233 80 73 chr15 45658320 45658470 -55722051 + L2 LINE L2 3146 3296 -17 * 2056 139 3 0 chr15 45659410 45659711 -55720810 + AluSx SINE Alu 1 302 -10 252 0 0 0 chr15 45660600 45660628 -55719893 + (CA)n Simple_repeat Simple_repeat 1 28 0 264 289 62 31 chr15 45660763 45660860 -55719661 - MIR3 SINE MIR -26 182 83 445 312 5 70 chr15 45661865 45662064 -55718457 + MIR SINE MIR 13 198 -64 368 159 0 0 chr15 45662326 45662389 -55718132 + L1PA15-16 LINE L1 2877 2939 -3910 228 375 0 10 chr15 45662668 45662764 -55717757 + MIR SINE MIR 57 151 -111 24 53 0 0 chr15 45662827 45662865 -55717656 + AT_rich Low_complexity Low_complexity 1 38 0 2661 170 49 42 chr15 45663041 45663594 -55716927 - MER74A LTR ERVL 0 558 2 187 328 17 0 chr15 45663728 45663786 -55716735 + MIR SINE MIR 198 256 -6 2468 251 70 66 chr15 45664294 45665372 -55715149 - HAL1 LINE L1 -186 2321 1240 292 233 25 74 chr15 45665468 45665631 -55714890 - L1MCa LINE L1 -3098 3328 3174 3256 124 36 4 chr15 45665660 45666183 -55714338 - L1PA11 LINE L1 -1 6173 5634 472 120 0 0 chr15 45666259 45666334 -55714187 - L1PA7 LINE L1 -2 6152 6078 351 300 80 60 chr15 45666393 45666643 -55713878 - L1MCa LINE L1 -3335 3091 2837 204 67 0 0 chr15 45666777 45666807 -55713714 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 7715 116 14 2 chr15 45666807 45668778 -55711743 - L1PA8 LINE L1 -18 6154 4178 1581 247 16 7 chr15 45668779 45669232 -55711289 - L1M4 LINE L1 -803 5343 4887 950 254 63 14 chr15 45669237 45669584 -55710937 - L1MCa LINE L1 -5096 1330 967 452 269 0 0 chr15 45669690 45669835 -55710686 + L1P LINE L1 2257 2401 -3745 1894 132 4 0 chr15 45669835 45670165 -55710356 + AluSg SINE Alu 1 331 0 674 229 71 75 chr15 45670987 45671240 -55709281 - MLT1J LTR MaLR -255 256 5 245 303 66 26 chr15 45672095 45672171 -55708350 + L2 LINE L2 3188 3266 -6 511 252 175 0 chr15 45672879 45673022 -55707499 + L3 LINE CR1 1150 1317 -260 1560 147 51 15 chr15 45673262 45673535 -55706986 + MER1B DNA MER1_type 1 283 -56 38 51 0 0 chr15 45674195 45674254 -55706267 + AT_rich Low_complexity Low_complexity 1 59 0 1375 148 0 0 chr15 45674342 45674552 -55705969 + AluSx SINE Alu 4 213 -99 214 178 0 0 chr15 45674834 45674879 -55705642 + T-rich Low_complexity Low_complexity 1 45 0 4347 176 38 14 chr15 45675349 45675411 -55705110 - L1MC2 LINE L1 -6 6338 6279 2400 67 0 3 chr15 45675411 45675709 -55704812 + AluY SINE Alu 1 297 -14 4347 176 38 14 chr15 45675709 45676551 -55703970 - L1MC2 LINE L1 -65 6279 5413 1935 118 33 0 chr15 45676560 45676866 -55703655 - L1PA16 LINE L1 -9 6157 5842 762 130 72 0 chr15 45676866 45677043 -55703478 - L1MC2 LINE L1 -743 5403 5224 2307 118 0 0 chr15 45678234 45678547 -55701974 - AluSq SINE Alu 0 313 1 25 0 0 0 chr15 45679459 45679484 -55701037 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr15 45680471 45680499 -55700022 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr15 45680530 45680553 -55699968 + AT_rich Low_complexity Low_complexity 1 23 0 193 281 88 0 chr15 45683436 45683493 -55697028 - L2 LINE L2 -16 3297 3236 342 326 10 0 chr15 45684379 45684477 -55696044 + MIR SINE MIR 40 138 -70 244 155 17 17 chr15 45684591 45684649 -55695872 + GA-rich Low_complexity Low_complexity 1 58 0 1638 204 29 125 chr15 45684651 45685245 -55695276 - MLT1F1 LTR MaLR -3 564 3 369 331 38 45 chr15 45685772 45685929 -55694592 - MIR3 SINE MIR -48 160 5 347 291 267 12 chr15 45686338 45686510 -55694011 - MIR SINE MIR 0 262 47 1850 135 3 36 chr15 45688368 45688672 -55691849 - AluSx SINE Alu -18 294 1 281 341 96 58 chr15 45688960 45689168 -55691353 + MIR SINE MIR 46 261 -1 709 172 47 0 chr15 45689595 45689723 -55690798 - AluJb SINE Alu -178 134 1 720 222 12 12 chr15 45689723 45689898 -55690623 - MER33 DNA MER1_type -249 75 1 433 347 94 18 chr15 45689964 45690295 -55690226 + L2 LINE L2 2181 2536 -778 191 200 0 0 chr15 45690724 45690759 -55689762 - MIR SINE MIR 0 262 228 2234 107 0 3 chr15 45690919 45691228 -55689293 - AluSg SINE Alu -2 308 1 339 269 10 19 chr15 45691351 45691455 -55689066 + MER5A DNA MER1_type 10 112 -77 240 298 24 24 chr15 45691532 45691616 -55688905 - L2 LINE L2 -35 3278 3195 342 294 190 27 chr15 45693205 45693389 -55687132 - MIR SINE MIR -42 220 7 21 82 0 0 chr15 45694063 45694112 -55686409 + AT_rich Low_complexity Low_complexity 1 49 0 1672 139 0 4 chr15 45694552 45694803 -55685718 - AluSg SINE Alu -60 250 1 7337 162 24 29 chr15 45694900 45696345 -55684176 - L1P5 LINE L1 -363 5788 3 261 203 0 43 chr15 45696348 45696417 -55684104 - L1 LINE L1 -1659 4487 4422 24 0 0 0 chr15 45696437 45696461 -55684060 + AT_rich Low_complexity Low_complexity 1 24 0 5992 167 16 13 chr15 45696465 45698686 -55681835 - L1PB1 LINE L1 0 6151 3926 * 6736 172 57 6 chr15 45698685 45699501 -55681020 + L1PBa LINE L1 1814 2587 -4275 282 56 0 0 chr15 45699501 45699537 -55680984 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6736 172 57 6 chr15 45699537 45701212 -55679309 + L1PBa LINE L1 2587 4429 -2433 * 8426 227 39 18 chr15 45701205 45703392 -55677129 - L1 LINE L1 -1707 4439 2201 2075 134 0 3 chr15 45703392 45703691 -55676830 + AluSx SINE Alu 1 298 -14 8426 227 39 18 chr15 45703691 45703779 -55676742 - L1 LINE L1 -3945 2201 2116 1994 114 0 4 chr15 45703781 45704053 -55676468 + AluSg SINE Alu 1 271 -39 809 291 116 27 chr15 45704153 45704638 -55675883 - L1MCc LINE L1 -5068 1355 828 23 33 0 0 chr15 45704797 45704827 -55675694 + AT_rich Low_complexity Low_complexity 1 30 0 437 286 121 22 chr15 45704971 45705244 -55675277 - L1MCc LINE L1 -6100 323 24 1418 230 124 47 chr15 45705357 45705826 -55674695 + MLT1D LTR MaLR 1 505 0 1667 234 49 28 chr15 45706325 45706914 -55673607 - L1ME3A LINE L1 -3 6167 5536 2199 141 5 16 chr15 45707085 45707453 -55673068 - THE1B LTR MaLR 0 364 1 9982 113 12 69 chr15 45707453 45709128 -55671393 - THE1B-int LTR MaLR 0 1580 1 2249 125 31 17 chr15 45709128 45709487 -55671034 - THE1B LTR MaLR 0 364 1 239 295 31 54 chr15 45710071 45710200 -55670321 + L1PB4 LINE L1 122 247 -5957 3672 227 54 58 chr15 45710405 45711874 -55668647 + L1PB4 LINE L1 355 1829 -4374 2040 139 51 20 chr15 45711874 45712227 -55668294 + THE1B LTR MaLR 1 364 0 11029 104 12 6 chr15 45712227 45713797 -55666724 + THE1B-int LTR MaLR 1 1580 0 2162 90 52 60 chr15 45713797 45714162 -55666359 + THE1B LTR MaLR 1 362 -2 3672 227 54 58 chr15 45714162 45714262 -55666259 + L1PB4 LINE L1 1826 2030 -4173 11826 212 38 5 chr15 45714263 45714328 -55666193 + L1PB4 LINE L1 2283 2344 -3869 486 0 0 0 chr15 45714328 45714382 -55666139 + (TA)n Simple_repeat Simple_repeat 2 55 0 11826 212 38 5 chr15 45714382 45718133 -55662388 + L1PB4 LINE L1 2344 6208 -5 2411 186 10 14 chr15 45718186 45718674 -55661847 - L1MD1 LINE L1 0 6242 5757 300 292 50 8 chr15 45718708 45718828 -55661693 - L1M4 LINE L1 -1873 5692 5568 24 0 0 0 chr15 45719468 45719492 -55661029 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr15 45719736 45719775 -55660746 + AT_rich Low_complexity Low_complexity 1 39 0 261 193 36 24 chr15 45719875 45719958 -55660563 + (TATATG)n Simple_repeat Simple_repeat 4 87 0 228 217 61 0 chr15 45720666 45720781 -55659740 + (TA)n Simple_repeat Simple_repeat 2 123 0 3069 218 41 9 chr15 45721715 45722745 -55657776 - L1M4 LINE L1 -3156 4409 3345 413 287 54 67 chr15 45722777 45723000 -55657521 - MSTB2 LTR MaLR -230 227 8 10805 220 35 21 chr15 45723000 45726701 -55653820 + L1MA9 LINE L1 2350 6108 -204 339 258 48 23 chr15 45726696 45726833 -55653688 + L1M2 LINE L1 1461 1975 -4408 * 546 196 58 65 chr15 45726834 45726972 -55653549 + Tigger2a DNA MER2_type 1 137 -297 411 363 8 17 chr15 45726972 45727209 -55653312 - L1M4 LINE L1 -6199 1367 1133 1933 229 73 12 chr15 45727215 45727997 -55652524 - L1M2c LINE L1 -4593 2505 1659 912 138 17 50 chr15 45729227 45729408 -55651113 - MLT1B LTR MaLR -215 175 1 35 41 0 0 chr15 45730473 45730522 -55649999 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr15 45730536 45730557 -55649964 + AT_rich Low_complexity Low_complexity 1 21 0 583 118 0 0 chr15 45730791 45730884 -55649637 - L1PA15 LINE L1 -8 6157 6065 2150 120 16 46 chr15 45730995 45731362 -55649159 - L1PB1 LINE L1 -2 6149 5794 11083 193 16 15 chr15 45731151 45731364 -55649157 - L1MB2 LINE L1 -163 6008 5797 183 42 0 0 chr15 45731364 45731388 -55649133 + (TA)n Simple_repeat Simple_repeat 1 24 0 11083 193 16 15 chr15 45731388 45731417 -55649104 - L1MB2 LINE L1 -374 5797 5770 511 130 11 0 chr15 45731417 45731509 -55649012 - L1PA15 LINE L1 -8 6157 6065 11083 193 16 15 chr15 45731509 45734581 -55645940 - L1MB2 LINE L1 -401 5770 2721 6559 26 0 0 chr15 45734622 45735383 -55645138 - L1PA4 LINE L1 -3 6152 5392 * 8253 98 12 40 chr15 45735378 45736698 -55643823 + L1P LINE L1 1418 2700 -3446 5723 193 43 9 chr15 45736701 45737977 -55642544 - L1 LINE L1 -2014 5551 4232 6090 69 20 63 chr15 45737988 45739919 -55640602 - SVA Other Other -518 1383 72 306 0 0 0 chr15 45739919 45739953 -55640568 + (GGGAGA)n Simple_repeat Simple_repeat 5 38 0 18258 157 85 7 chr15 45739955 45743540 -55636981 - L1 LINE L1 -3690 3875 17 4138 214 35 42 chr15 45743543 45745188 -55635333 - L1PA13 LINE L1 -3790 3007 1329 3264 223 10 22 chr15 45745183 45745873 -55634648 - L1PA13 LINE L1 -6104 683 2 * 863 329 41 13 chr15 45746126 45746579 -55633942 + L1M2 LINE L1 2 1216 -6369 299 297 79 76 chr15 45747300 45747603 -55632918 + L1M2 LINE L1 1532 1835 -5750 13325 217 43 10 chr15 45747797 45748317 -55632204 + L1PA16 LINE L1 395 897 -5326 2292 83 0 23 chr15 45748317 45748617 -55631904 + AluSg SINE Alu 1 293 -17 13325 217 43 10 chr15 45748617 45753643 -55626878 + L1PA16 LINE L1 897 6214 -9 2347 94 0 0 chr15 45753765 45754064 -55626457 + AluSg SINE Alu 1 299 -11 1308 199 112 85 chr15 45754294 45754786 -55625735 + MLT1D LTR MaLR 1 505 0 326 344 16 0 chr15 45755965 45756093 -55624428 - MIR3 SINE MIR -48 160 31 377 303 106 0 chr15 45757150 45757282 -55623239 + MIR SINE MIR 47 192 -70 227 300 100 0 chr15 45757277 45757367 -55623154 + L2 LINE L2 3207 3305 -8 * 2376 229 53 18 chr15 45757368 45758147 -55622374 - L1 LINE L1 -2316 3830 3025 4745 150 30 54 chr15 45758160 45759171 -55621350 - L1MA7 LINE L1 -2 6289 5304 1544 185 51 15 chr15 45759168 45759503 -55621018 - L1MA7 LINE L1 -163 6128 5782 * 259 162 86 0 chr15 45759503 45759608 -55620913 + (TA)n Simple_repeat Simple_repeat 1 114 0 1232 175 26 4 chr15 45759610 45759844 -55620677 - L1MA7 LINE L1 -504 5787 5549 * 6120 167 24 4 chr15 45759826 45761017 -55619504 - L1MA7 LINE L1 -798 5348 4134 900 172 0 0 chr15 45761015 45761184 -55619337 - L1 LINE L1 -3105 3041 2873 * 403 294 16 0 chr15 45761178 45761304 -55619217 + L1ME LINE L1 5512 5639 -525 * 745 244 65 0 chr15 45761298 45761515 -55619006 - L1MCc LINE L1 -5074 1349 1119 2376 233 45 29 chr15 45761532 45762071 -55618450 - L1M4 LINE L1 -2931 3215 2655 1679 171 150 6 chr15 45762071 45762417 -55618104 + MSTD LTR MaLR 1 396 0 2376 233 45 29 chr15 45762417 45762741 -55617780 - L1M4 LINE L1 -3491 2655 2338 1738 145 60 33 chr15 45762959 45763324 -55617197 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr15 45763643 45763666 -55616855 + AT_rich Low_complexity Low_complexity 1 23 0 1359 161 121 3 chr15 45763877 45764225 -55616296 - Charlie5 DNA MER1_type 0 2624 2236 462 206 10 0 chr15 45764243 45764340 -55616181 - Charlie5 DNA MER1_type -2499 113 16 2055 118 0 0 chr15 45765678 45765957 -55614564 + AluSx SINE Alu 1 279 -33 928 281 63 52 chr15 45766592 45767037 -55613484 - LTR16A LTR ERVL 0 450 1 21 0 0 0 chr15 45767079 45767100 -55613421 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr15 45767133 45767157 -55613364 + (TAGA)n Simple_repeat Simple_repeat 4 27 0 202 152 43 22 chr15 45767216 45767262 -55613259 + (CA)n Simple_repeat Simple_repeat 2 48 0 5607 143 49 21 chr15 45767463 45768592 -55611929 + L1MA4A LINE L1 5137 6298 -5 15666 168 25 114 chr15 45768896 45769991 -55610530 + L1PA13 LINE L1 2159 3350 -4251 2046 108 38 0 chr15 45769991 45770278 -55610243 - AluSq SINE Alu -13 300 3 15666 168 25 114 chr15 45770278 45771960 -55608561 + L1PA13 LINE L1 3350 5180 -2421 2615 70 3 20 chr15 45771960 45772315 -55608206 + MER41A LTR ERV1 118 466 -88 15666 168 25 114 chr15 45772315 45773505 -55607016 + L1PA13 LINE L1 5180 5803 -1798 7499 28 1 1 chr15 45773505 45774513 -55606008 + L1PA4 LINE L1 5142 6149 -6 15666 168 25 114 chr15 45774513 45776158 -55604363 + L1PA13 LINE L1 5803 7593 -8 234 222 48 32 chr15 45776177 45776240 -55604281 + MIR3 SINE MIR 139 202 -6 24 77 0 0 chr15 45776800 45776852 -55603669 + AT_rich Low_complexity Low_complexity 1 52 0 486 0 0 0 chr15 45777212 45777266 -55603255 + (TA)n Simple_repeat Simple_repeat 1 54 0 255 238 0 16 chr15 45777371 45777434 -55603087 + (TATG)n Simple_repeat Simple_repeat 2 63 0 33 80 0 0 chr15 45777454 45777529 -55602992 + AT_rich Low_complexity Low_complexity 1 75 0 27 0 0 0 chr15 45778150 45778177 -55602344 + AT_rich Low_complexity Low_complexity 1 27 0 426 20 0 0 chr15 45778207 45778258 -55602263 + (CA)n Simple_repeat Simple_repeat 2 52 0 726 206 0 0 chr15 45778295 45778426 -55602095 + FLAM_C SINE Alu 1 131 -12 925 269 67 0 chr15 45778852 45779135 -55601386 - L1MC4 LINE L1 -144 7898 7597 2181 190 53 0 chr15 45779197 45779671 -55600850 - L1MA9 LINE L1 0 6312 5814 2188 60 15 96 chr15 45779696 45780030 -55600491 - AluY SINE Alu 0 311 5 216 324 149 22 chr15 45780209 45780564 -55599957 + L2 LINE L2 1313 1712 -1602 305 301 61 66 chr15 45780570 45780766 -55599755 - L2 LINE L2 -461 2853 2659 950 258 20 0 chr15 45781178 45781422 -55599099 - LTR53 LTR ERVL 0 519 271 1465 113 0 28 chr15 45782637 45782849 -55597672 + AluSx SINE Alu 1 206 -106 1724 147 7 30 chr15 45783091 45783391 -55597130 + AluJo SINE Alu 1 293 -19 272 169 88 0 chr15 45783423 45783501 -55597020 + MIR SINE MIR 58 145 -63 512 180 129 61 chr15 45784440 45784609 -55595912 - MIR SINE MIR -62 146 16 342 0 0 0 chr15 45784790 45784828 -55595693 + (CA)n Simple_repeat Simple_repeat 2 39 0 3795 59 0 0 chr15 45785384 45785861 -55594660 - L1P LINE L1 -1009 5137 4661 519 143 0 0 chr15 45786292 45786369 -55594152 + AluJ/FLAM SINE Alu 2 78 -234 391 167 0 0 chr15 45786370 45786430 -55594091 + AluJ/F(R)AM SINE Alu 147 206 -105 1629 124 0 17 chr15 45786530 45786763 -55593758 - AluSq SINE Alu -84 229 1 2236 186 30 5 chr15 45786764 45787194 -55593327 - L1MC/D LINE L1 -422 5820 5380 261 146 0 18 chr15 45787194 45787249 -55593272 + MER113 DNA MER1_type? 94 147 -374 1544 174 16 0 chr15 45787251 45787504 -55593017 + AluJb SINE Alu 37 293 -19 919 130 6 43 chr15 45787527 45787689 -55592832 + MER5A DNA MER1_type 2 157 -32 965 114 0 0 chr15 45787913 45788044 -55592477 + THE1C LTR MaLR 245 375 0 5960 107 28 94 chr15 45788063 45789089 -55591432 + THE1C-int LTR MaLR 21 979 -601 26249 43 1 1 chr15 45789236 45793046 -55587475 + L1PA4 LINE L1 2346 6155 0 2274 98 65 0 chr15 45793046 45793371 -55587150 - HERVK22 LTR ERVK -6489 348 3 2418 180 11 28 chr15 45793373 45793839 -55586682 - LTR22A LTR ERVK 0 458 1 223 281 85 12 chr15 45793930 45794012 -55586509 + MIR SINE MIR 98 185 -77 1071 274 4 0 chr15 45794018 45794263 -55586258 + MIR SINE MIR 5 250 -12 209 313 16 0 chr15 45794282 45794346 -55586175 + MIR SINE MIR 197 261 -1 26 50 0 0 chr15 45795125 45795165 -55585356 + AT_rich Low_complexity Low_complexity 1 40 0 668 279 97 13 chr15 45795226 45795463 -55585058 + MIR SINE MIR 6 262 0 463 276 102 123 chr15 45796662 45797133 -55583388 + L2 LINE L2 2810 3270 -2 333 252 187 0 chr15 45797463 45797586 -55582935 - MLT1F1 LTR MaLR -3 564 419 1431 213 10 7 chr15 45797597 45797888 -55582633 + MLT1A1 LTR MaLR 10 301 -64 10218 103 5 1 chr15 45797995 45799420 -55581101 - L1P LINE L1 -4715 1431 1 3320 192 10 16 chr15 45799423 45800048 -55580473 + HERVK22 LTR ERVK 341 961 -5876 35645 95 6 4 chr15 45800162 45804842 -55575679 + HERVK22 LTR ERVK 767 5458 -1379 1535 188 3 24 chr15 45804844 45805137 -55575384 + LTR22A LTR ERVK 172 458 0 427 269 96 12 chr15 45806186 45806353 -55574168 - MIR3 SINE MIR -10 198 18 500 287 72 12 chr15 45806423 45806590 -55573931 - MER5B DNA MER1_type 0 178 2 369 181 0 14 chr15 45806603 45806675 -55573846 + L1MC1 LINE L1 6254 6324 -9 2200 105 3 3 chr15 45806678 45806972 -55573549 + AluSg SINE Alu 3 296 -14 458 288 111 10 chr15 45807375 45807573 -55572948 - MIR SINE MIR -13 249 32 290 331 84 14 chr15 45808815 45808957 -55571564 - L2 LINE L2 0 3272 3121 183 167 0 0 chr15 45809721 45809763 -55570758 + (TA)n Simple_repeat Simple_repeat 1 42 0 25 31 0 0 chr15 45809838 45809870 -55570651 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr15 45809887 45809909 -55570612 + AT_rich Low_complexity Low_complexity 1 22 0 3974 186 5 17 chr15 45810262 45811069 -55569452 + L1 LINE L1 4126 4922 -1224 391 158 26 0 chr15 45811075 45811151 -55569370 - L1P LINE L1 -967 5179 5102 5993 111 41 3 chr15 45811170 45812376 -55568145 + L1PA16 LINE L1 4927 6166 0 790 223 104 23 chr15 45812412 45812632 -55567889 + MIR SINE MIR 6 243 -19 194 235 143 31 chr15 45812623 45812721 -55567800 - MIR SINE MIR -76 186 78 * 644 304 69 11 chr15 45813259 45813519 -55567002 + L3 LINE CR1 1237 1511 -66 1928 107 97 13 chr15 45814373 45814681 -55565840 + MSTB LTR MaLR 1 334 -92 493 234 13 45 chr15 45814748 45814902 -55565619 + MER104 DNA Tc2 32 180 0 43 35 0 0 chr15 45815243 45815300 -55565221 + AT_rich Low_complexity Low_complexity 1 57 0 225 0 0 0 chr15 45817492 45817517 -55563004 + (TC)n Simple_repeat Simple_repeat 2 26 0 373 340 27 0 chr15 45817617 45817764 -55562757 - MIR3 SINE MIR -29 179 29 209 180 0 33 chr15 45817943 45818004 -55562517 + CT-rich Low_complexity Low_complexity 1 59 0 553 258 92 92 chr15 45818828 45819294 -55561227 + LTR37B LTR ERV1 3 468 0 457 252 49 0 chr15 45819297 45819420 -55561101 - MIR SINE MIR -77 185 57 23 54 0 0 chr15 45819603 45819640 -55560881 + AT_rich Low_complexity Low_complexity 1 37 0 417 177 0 0 chr15 45821797 45821876 -55558645 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 669 310 17 17 chr15 45822832 45823122 -55557399 - AluY SINE Alu -9 292 3 308 354 80 19 chr15 45824263 45824475 -55556046 - MIR SINE MIR -24 238 14 419 171 45 27 chr15 45824864 45824975 -55555546 - MER103 DNA DNA -44 122 10 352 340 80 6 chr15 45825979 45826141 -55554380 - MIR3 SINE MIR -2 206 33 25 31 0 0 chr15 45826166 45826198 -55554323 + AT_rich Low_complexity Low_complexity 1 32 0 482 291 79 31 chr15 45826208 45826435 -55554086 - MIR SINE MIR -9 253 16 309 176 118 0 chr15 45826714 45826782 -55553739 + MER5A DNA MER1_type 37 112 -77 412 256 88 50 chr15 45827206 45827366 -55553155 + MIR SINE MIR 32 197 -65 571 252 17 0 chr15 45828347 45828466 -55552055 - FLAM_A SINE Alu -16 126 6 247 250 0 0 chr15 45828893 45828945 -55551576 + (TG)n Simple_repeat Simple_repeat 1 52 0 603 252 183 62 chr15 45829550 45829970 -55550551 + L2 LINE L2 2843 3313 0 985 285 49 19 chr15 45830466 45830835 -55549686 - L1ME4a LINE L1 -194 5927 5548 22 0 0 0 chr15 45830896 45830918 -55549603 + AT_rich Low_complexity Low_complexity 1 22 0 3004 151 26 45 chr15 45830976 45831579 -55548942 - L1MD3 LINE L1 0 7995 7404 617 237 0 0 chr15 45831579 45831697 -55548824 - MLT1F1 LTR MaLR -442 125 8 268 291 39 48 chr15 45831734 45831837 -55548684 - MIR SINE MIR -86 122 21 438 258 152 7 chr15 45832512 45832663 -55547858 - MIR SINE MIR -60 202 30 401 255 130 37 chr15 45832786 45832947 -55547574 - MIR SINE MIR -65 197 22 21 71 0 0 chr15 45833550 45833592 -55546929 + AT_rich Low_complexity Low_complexity 1 42 0 562 273 99 21 chr15 45833745 45834027 -55546494 - L1MC4a LINE L1 -1886 5922 5619 261 284 0 14 chr15 45834085 45834159 -55546362 - L1MC4a LINE L1 -2181 5627 5555 1807 110 48 21 chr15 45834814 45835105 -55545416 + AluSq SINE Alu 1 299 -14 246 282 99 28 chr15 45835498 45835750 -55544771 - HAL1b LINE L1 -629 719 450 264 279 39 31 chr15 45835888 45836017 -55544504 - HAL1 LINE L1 -1161 1346 1217 357 231 48 29 chr15 45838160 45838264 -55542257 + MIR SINE MIR 13 118 -144 4107 188 40 23 chr15 45838278 45839117 -55541404 - MER21B LTR ERV1 -9 854 1 463 250 44 15 chr15 45839117 45839253 -55541268 + MIR SINE MIR 113 252 -10 233 277 116 18 chr15 45839277 45839389 -55541132 + L3 LINE CR1 1453 1575 -2 1150 106 18 12 chr15 45841275 45841445 -55539076 + AluY SINE Alu 1 171 -140 1789 157 107 25 chr15 45842026 45842077 -55538444 + MER63B DNA MER1_type 1 46 -1016 2314 82 0 0 chr15 45842077 45842386 -55538135 + AluY SINE Alu 1 309 0 1789 157 107 25 chr15 45842386 45842734 -55537787 + MER63B DNA MER1_type 46 434 -2 606 276 75 22 chr15 45843620 45843939 -55536582 + L1ME3A LINE L1 5627 5962 -208 250 246 125 69 chr15 45843960 45844192 -55536329 + L1ME3A LINE L1 5926 6170 0 739 237 0 0 chr15 45844244 45844383 -55536138 + MER5B DNA MER1_type 38 176 -2 650 251 87 6 chr15 45844749 45844932 -55535589 - MIR SINE MIR 0 262 65 726 33 0 0 chr15 45844935 45845025 -55535496 + L1MA1 LINE L1 6204 6293 -9 26 0 0 0 chr15 45845025 45845051 -55535470 + AT_rich Low_complexity Low_complexity 1 26 0 873 167 151 21 chr15 45845087 45845326 -55535195 + Charlie1b DNA MER1_type 45 314 -209 1954 151 6 10 chr15 45845568 45845879 -55534642 + AluSx SINE Alu 1 310 -2 1423 139 204 0 chr15 45845968 45846248 -55534273 + MER1B DNA MER1_type 1 337 0 790 264 136 45 chr15 45846280 45846780 -55533741 + L2 LINE L2 2734 3306 -7 265 303 97 48 chr15 45846839 45847067 -55533454 + L2 LINE L2 2283 2521 -793 399 248 186 0 chr15 45847482 45847627 -55532894 + MIR SINE MIR 79 250 -12 2322 101 3 0 chr15 45848059 45848357 -55532164 - AluSq SINE Alu -14 299 1 331 251 150 12 chr15 45850429 45850596 -55529925 + MIR3 SINE MIR 11 200 -8 264 347 32 16 chr15 45851329 45851453 -55529068 + L2 LINE L2 3141 3266 -6 2082 134 0 0 chr15 45852565 45852875 -55527646 - AluSx SINE Alu 0 310 1 2123 121 3 7 chr15 45853083 45853380 -55527141 + AluSc SINE Alu 1 296 -13 318 333 95 32 chr15 45854054 45854243 -55526278 + L1MEd LINE L1 316 516 -5603 2528 147 28 2 chr15 45854624 45855061 -55525460 + L1MB2 LINE L1 5719 6166 -5 380 259 45 0 chr15 45855074 45855186 -55525335 + MIR SINE MIR 146 262 0 199 267 0 0 chr15 45855502 45855547 -55524974 + L2 LINE L2 3268 3312 -1 366 340 97 72 chr15 45855596 45856069 -55524452 - L1M2 LINE L1 -5897 952 468 460 171 0 12 chr15 45857139 45857221 -55523300 + MER5A DNA MER1_type 109 189 0 24 32 0 0 chr15 45858447 45858478 -55522043 + AT_rich Low_complexity Low_complexity 1 31 0 210 37 0 0 chr15 45859069 45859096 -55521425 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 305 282 145 0 chr15 45859450 45859581 -55520940 - MIR SINE MIR -56 206 57 340 317 139 57 chr15 45860866 45861292 -55519229 + L2 LINE L2 2780 3272 0 22 0 0 0 chr15 45863561 45863583 -55516938 + AT_rich Low_complexity Low_complexity 1 22 0 2304 94 3 3 chr15 45865629 45865927 -55514594 + AluSp SINE Alu 1 298 -15 243 250 15 29 chr15 45866584 45866652 -55513869 + Charlie8 DNA MER1_type 26 92 -2325 301 211 73 49 chr15 45867774 45867897 -55512624 - L1ME4a LINE L1 -2 6119 5994 216 158 0 0 chr15 45867968 45868006 -55512515 + (CA)n Simple_repeat Simple_repeat 2 39 0 797 283 66 30 chr15 45868021 45868428 -55512093 - L1ME4a LINE L1 -203 5918 5497 227 217 33 0 chr15 45869550 45869610 -55510911 + GA-rich Low_complexity Low_complexity 2 63 0 295 283 58 58 chr15 45869641 45869814 -55510707 - MIR SINE MIR -70 192 20 624 285 60 10 chr15 45869984 45870184 -55510337 + MIR SINE MIR 20 229 -33 3872 195 60 40 chr15 45870278 45871199 -55509322 + L1M2 LINE L1 9 947 -5902 7605 151 50 9 chr15 45871303 45873381 -55507140 - L1MA4A LINE L1 -386 6619 4463 1200 203 11 63 chr15 45873382 45873653 -55506868 - AluJb SINE Alu -19 293 37 348 132 0 0 chr15 45873653 45873706 -55506815 + AluJb SINE Alu 56 108 -194 9202 178 19 41 chr15 45873733 45877253 -55503268 - L1MA4A LINE L1 -2376 4472 1031 1257 162 24 0 chr15 45877811 45878058 -55502463 + L1MA4A LINE L1 6040 6292 -11 22 35 0 0 chr15 45878098 45878127 -55502394 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr15 45878180 45878204 -55502317 + AT_rich Low_complexity Low_complexity 1 24 0 322 311 46 33 chr15 45878918 45879069 -55501452 - MER5A DNA MER1_type 0 189 37 221 143 0 20 chr15 45879333 45879382 -55501139 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 317 326 127 22 chr15 45879808 45880084 -55500437 + L3 LINE CR1 441 745 -832 2481 71 0 0 chr15 45881668 45881979 -55498542 - AluY SINE Alu 0 311 1 310 125 0 0 chr15 45886765 45886813 -55493708 + L2 LINE L2 3266 3313 0 22 0 0 0 chr15 45887060 45887082 -55493439 + AT_rich Low_complexity Low_complexity 1 22 0 1797 211 43 31 chr15 45887514 45888026 -55492495 - Charlie1b DNA MER1_type -5 518 1 283 331 39 8 chr15 45888038 45888168 -55492353 + MIR3 SINE MIR 72 205 -3 378 308 135 44 chr15 45888469 45889025 -55491496 + L2 LINE L2 2091 2764 -550 414 342 125 44 chr15 45890546 45891201 -55489320 - L2 LINE L2 -8 3264 2550 929 192 22 6 chr15 45891417 45891599 -55488922 + MER5A DNA MER1_type 2 186 -3 250 201 22 114 chr15 45891692 45891799 -55488722 + MIR SINE MIR 46 145 -63 197 344 146 45 chr15 45891899 45892954 -55487567 - L2 LINE L2 -917 2397 1236 877 245 14 19 chr15 45893113 45893325 -55487196 + MIR SINE MIR 2 212 -50 31 0 0 0 chr15 45893331 45893362 -55487159 + AT_rich Low_complexity Low_complexity 1 31 0 353 217 0 0 chr15 45893379 45893439 -55487082 + MIR SINE MIR 199 258 -4 436 272 11 83 chr15 45894106 45894286 -55486235 - MIR SINE MIR -31 231 65 41 36 0 0 chr15 45894521 45894576 -55485945 + AT_rich Low_complexity Low_complexity 1 55 0 327 254 67 85 chr15 45894604 45894828 -55485693 + L1MC4a LINE L1 5827 6046 -1762 569 303 126 60 chr15 45894974 45895802 -55484719 + L1MEd LINE L1 6 887 -5232 749 254 24 91 chr15 45896938 45897277 -55483244 + MER46C DNA MER2_type 23 338 0 405 255 35 35 chr15 45897680 45897821 -55482700 - MIR SINE MIR -3 259 119 304 283 22 66 chr15 45898022 45898248 -55482273 - HAL1 LINE L1 -10 2497 2282 1653 255 116 42 chr15 45898678 45899518 -55481003 - HAL1 LINE L1 -633 1874 973 252 207 17 0 chr15 45899933 45899991 -55480530 - MER96 DNA MER1_type? 0 175 117 537 232 27 0 chr15 45900005 45900117 -55480404 - L2 LINE L2 0 3313 3199 743 325 88 15 chr15 45900330 45900659 -55479862 - L2 LINE L2 -3 3269 2917 5018 236 35 14 chr15 45900668 45902305 -55478216 + L1PA15-16 LINE L1 2737 4410 -2439 4971 116 12 5 chr15 45902305 45903056 -55477465 + L1PA16 LINE L1 5410 6165 -1 192 200 0 0 chr15 45903414 45903469 -55477052 + GA-rich Low_complexity Low_complexity 1 55 0 3939 139 8 3 chr15 45904047 45904682 -55475839 + L1PB3 LINE L1 5514 6151 -3 22 0 0 0 chr15 45904683 45904705 -55475816 + AT_rich Low_complexity Low_complexity 1 22 0 1678 78 0 5 chr15 45905121 45905339 -55475182 + AluY SINE Alu 94 310 -1 2734 255 38 25 chr15 45905339 45906348 -55474173 + L1MB1 LINE L1 852 1876 -4508 9782 216 92 27 chr15 45906442 45908796 -55471725 + L1MB1 LINE L1 2092 4291 -2091 4757 169 2 21 chr15 45908796 45909603 -55470918 - MER54B LTR ERVL 0 793 2 9782 216 92 27 chr15 45909603 45909636 -55470885 + L1MB1 LINE L1 4291 4320 -2062 2227 93 3 29 chr15 45909636 45909946 -55470575 + AluSc SINE Alu 1 302 -7 9782 216 92 27 chr15 45909946 45910644 -55469877 + L1MB1 LINE L1 4320 5407 -975 2114 97 3 44 chr15 45910644 45910942 -55469579 + AluSg SINE Alu 3 288 -22 9782 216 92 27 chr15 45910942 45911041 -55469480 + L1MB1 LINE L1 5407 5498 -884 24599 148 34 16 chr15 45911041 45913077 -55467444 - L1P3 LINE L1 -746 5715 3717 216 86 0 0 chr15 45913077 45913112 -55467409 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 24599 148 34 16 chr15 45913112 45916618 -55463903 - L1P3 LINE L1 -2744 3717 4 1218 94 11 6 chr15 45916619 45916798 -55463723 + MLT2A2 LTR ERVL 295 453 0 5203 161 25 3 chr15 45916798 45917854 -55462667 + L1PA16 LINE L1 5116 6191 0 3178 184 35 3 chr15 45917855 45918484 -55462037 + L1MB1 LINE L1 5718 6366 -38 33 56 0 0 chr15 45918857 45918911 -55461610 + AT_rich Low_complexity Low_complexity 1 54 0 264 286 158 18 chr15 45918991 45919039 -55461482 + HAL1b LINE L1 513 553 -795 1702 171 10 17 chr15 45919039 45919331 -55461190 - AluJo SINE Alu -22 290 1 264 286 158 18 chr15 45919331 45919555 -55460966 + HAL1b LINE L1 553 823 -525 322 351 102 10 chr15 45919959 45920272 -55460249 + L1MC4a LINE L1 2150 2491 -3655 315 295 70 87 chr15 45920332 45922402 -55458119 + L1MC4a LINE L1 2575 4608 -1538 2180 106 17 0 chr15 45922510 45922812 -55457709 - AluSx SINE Alu -5 307 1 254 328 45 8 chr15 45922930 45923064 -55457457 + L1MC4a LINE L1 4882 5020 -1126 1400 260 68 36 chr15 45923254 45923336 -55457185 + L1MC4a LINE L1 5260 5338 -2470 2498 54 0 3 chr15 45923336 45923633 -55456888 + AluY SINE Alu 1 296 -15 1400 260 68 36 chr15 45923633 45924196 -55456325 + L1MC4a LINE L1 5338 5926 -1882 229 251 210 27 chr15 45925034 45925368 -55455153 - L1ME4a LINE L1 -2 6119 5725 6085 77 37 6 chr15 45925435 45926405 -55454116 + L1PA11 LINE L1 5176 6173 -1 283 294 0 33 chr15 45927278 45927370 -55453151 - L1ME4a LINE L1 -415 5706 5618 31826 110 8 55 chr15 45928301 45934767 -55445754 + L1PA7 LINE L1 3 6153 -1 198 283 0 0 chr15 45934870 45934916 -55445605 - L2 LINE L2 -3 3310 3265 21 0 0 0 chr15 45934982 45935003 -55445518 + AT_rich Low_complexity Low_complexity 1 21 0 969 210 43 30 chr15 45935601 45935834 -55444687 - MER1B DNA MER1_type 0 339 104 21 71 0 0 chr15 45936103 45936145 -55444376 + AT_rich Low_complexity Low_complexity 1 42 0 268 314 7 29 chr15 45936182 45936322 -55444199 - L1ME4a LINE L1 -480 5641 5505 659 280 88 89 chr15 45936372 45936559 -55443962 - L1ME4a LINE L1 -747 5399 5213 2109 121 0 22 chr15 45936559 45936873 -55443648 - AluSq SINE Alu -6 307 1 822 143 32 0 chr15 45936881 45937007 -55443514 - FLAM_A SINE Alu -3 130 1 659 280 88 89 chr15 45937007 45937663 -55442858 - L1ME4a LINE L1 -940 5206 4548 1670 139 8 4 chr15 45937839 45938106 -55442415 + MER2 DNA MER2_type 75 342 -3 328 247 25 12 chr15 45938439 45938520 -55442001 + MIR3 SINE MIR 119 200 -8 441 304 6 0 chr15 45938899 45939018 -55441503 - MIR SINE MIR -61 147 24 185 267 33 17 chr15 45940054 45940114 -55440407 + MIR SINE MIR 158 218 -44 412 265 7 102 chr15 45940311 45940458 -55440063 - MIR3 SINE MIR -31 177 45 432 55 0 0 chr15 45941221 45941276 -55439245 + (CA)n Simple_repeat Simple_repeat 2 56 0 233 75 25 0 chr15 45941297 45941337 -55439184 + (TG)n Simple_repeat Simple_repeat 1 41 0 797 234 68 19 chr15 45941516 45941721 -55438800 - MIR SINE MIR -3 259 45 389 305 0 65 chr15 45942442 45942596 -55437925 - MIR SINE MIR -35 227 84 947 220 6 0 chr15 45943157 45943334 -55437187 - MER45A DNA AcHobo 0 178 1 691 142 33 33 chr15 45944924 45945044 -55435477 + 5S rRNA rRNA 1 120 -1 1087 288 107 87 chr15 45945220 45946409 -55434112 + L2 LINE L2 1764 2976 -338 359 308 8 62 chr15 45946403 45946533 -55433988 + L2 LINE L2 3137 3259 -13 * 511 302 68 10 chr15 45946564 45946756 -55433765 - MIR SINE MIR -47 215 13 991 290 53 31 chr15 45946797 45947307 -55433214 - LTR33 LTR ERVL 0 521 1 2483 71 0 0 chr15 45947582 45947876 -55432645 - AluY SINE Alu -16 295 2 337 286 48 32 chr15 45948302 45948428 -55432093 - MIR SINE MIR -61 201 74 29 28 0 0 chr15 45948428 45948464 -55432057 + AT_rich Low_complexity Low_complexity 1 36 0 241 214 0 0 chr15 45950904 45950959 -55429562 + polypurine Low_complexity Low_complexity 1 55 0 518 342 57 0 chr15 45954512 45954705 -55425816 + MIR SINE MIR 38 241 -21 417 323 62 0 chr15 45954791 45954921 -55425600 + L2 LINE L2 3133 3270 -2 746 212 76 68 chr15 45956911 45957147 -55423374 - L2 LINE L2 0 3313 3076 329 200 29 14 chr15 45957320 45957390 -55423131 + MLT1J1 LTR MaLR 70 140 -306 462 216 52 9 chr15 45957482 45957598 -55422923 + MLT1I LTR MaLR 277 397 -12 236 333 20 30 chr15 45958660 45958759 -55421762 - L2 LINE L2 -16 3297 3200 181 377 13 0 chr15 45959912 45959989 -55420532 - L3b LINE CR1 -205 1378 1301 180 355 25 25 chr15 45960535 45960656 -55419865 - L3 LINE CR1 -364 1213 1093 4613 25 1 0 chr15 45960717 45961535 -55418986 - L1PA3 LINE L1 -498 5657 4839 4269 22 0 0 chr15 45961535 45962025 -55418496 + L1PA3 LINE L1 5660 6152 -3 5082 173 14 20 chr15 45962139 45963322 -55417199 - L1MD1 LINE L1 -52 6190 5010 1034 258 62 25 chr15 45963300 45963812 -55416709 - L1MD1 LINE L1 -2642 3504 2974 * 679 220 119 37 chr15 45963895 45964113 -55416408 + MIR SINE MIR 17 252 -10 264 352 6 11 chr15 45965117 45965293 -55415228 + GA-rich Low_complexity Low_complexity 2 176 0 363 44 0 0 chr15 45965748 45965793 -55414728 + (TG)n Simple_repeat Simple_repeat 1 45 0 905 250 23 14 chr15 45967044 45967260 -55413261 - MIR SINE MIR 0 262 45 203 188 72 87 chr15 45967776 45967845 -55412676 + L2 LINE L2 3246 3313 0 253 216 159 0 chr15 45967926 45968014 -55412507 - MIR SINE MIR -71 191 90 272 269 39 77 chr15 45968096 45968226 -55412295 - MIR3 SINE MIR -76 132 8 22 35 0 0 chr15 45968467 45968496 -55412025 + AT_rich Low_complexity Low_complexity 1 29 0 212 143 0 0 chr15 45968844 45968879 -55411642 + (GA)n Simple_repeat Simple_repeat 2 36 0 189 0 0 0 chr15 45968970 45968991 -55411530 + (A)n Simple_repeat Simple_repeat 1 21 0 33 0 0 0 chr15 45969574 45969607 -55410914 + AT_rich Low_complexity Low_complexity 1 33 0 633 286 83 44 chr15 45969856 45970108 -55410413 + MIR SINE MIR 1 262 0 254 208 21 0 chr15 45970921 45970969 -55409552 + MER3 DNA MER1_type 42 90 -119 * 431 155 119 0 chr15 45970932 45971016 -55409505 - MER3 DNA MER1_type -6 203 110 181 302 121 43 chr15 45971787 45971903 -55408618 - L2 LINE L2 0 3272 3148 221 330 0 32 chr15 45971913 45972007 -55408514 - MIR3 SINE MIR -15 193 103 307 304 40 8 chr15 45973546 45973671 -55406850 - MIR3 SINE MIR -79 129 1 390 277 0 0 chr15 45976807 45976890 -55403631 + L2 LINE L2 3188 3270 -2 218 266 31 0 chr15 45976973 45977037 -55403484 - MIR SINE MIR -1 261 196 811 148 40 6 chr15 45977042 45977218 -55403303 - MER53 DNA DNA -5 184 3 489 209 9 18 chr15 45977224 45977334 -55403187 - MIR SINE MIR -60 202 94 484 215 50 115 chr15 45977336 45977643 -55402878 + L1MC4a LINE L1 5575 5819 -302 413 195 49 65 chr15 45977851 45977974 -55402547 - MIR SINE MIR -141 121 1 1304 271 43 29 chr15 45978901 45979322 -55401199 - LTR16A LTR ERVL -6 444 18 678 152 0 0 chr15 45979417 45979516 -55401005 - FLAM_C SINE Alu -32 111 13 2203 133 0 0 chr15 45980460 45980769 -55399752 - AluSx SINE Alu -3 309 1 1085 259 218 19 chr15 45982075 45982450 -55398071 + L2 LINE L2 1774 2073 -1241 1543 189 31 3 chr15 45982450 45982736 -55397785 - AluJb SINE Alu -18 294 1 1961 95 7 22 chr15 45982745 45983019 -55397502 - AluSq SINE Alu -9 304 35 1085 259 218 19 chr15 45983019 45983274 -55397247 + L2 LINE L2 2079 2542 -772 397 231 27 41 chr15 45983296 45983443 -55397078 + L1MC5 LINE L1 7641 7785 -176 468 0 0 0 chr15 45983600 45983652 -55396869 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 1134 294 137 16 chr15 45983652 45984337 -55396184 + L2 LINE L2 2544 3309 -4 300 53 0 0 chr15 45986261 45986299 -55394222 + (A)n Simple_repeat Simple_repeat 1 38 0 474 303 37 120 chr15 45987756 45988345 -55392176 + L2 LINE L2 2735 3271 -1 497 287 81 0 chr15 45988790 45988964 -55391557 - MER5A DNA MER1_type -1 188 1 280 333 141 15 chr15 45989121 45989256 -55391265 - MIR3 SINE MIR -54 154 3 342 344 39 8 chr15 45989721 45989849 -55390672 + L2 LINE L2 3124 3255 -17 366 23 0 0 chr15 45989850 45989893 -55390628 + (TGGA)n Simple_repeat Simple_repeat 2 44 0 1234 186 0 0 chr15 45990239 45990449 -55390072 - MER6B DNA MER2_type 0 210 1 224 286 0 0 chr15 45991234 45991290 -55389231 + L2 LINE L2 3216 3271 -1 982 224 46 124 chr15 45991343 45991434 -55389087 - MLT1C LTR MaLR -2 465 368 2330 83 3 26 chr15 45991434 45991747 -55388774 + AluSc SINE Alu 1 306 -3 982 224 46 124 chr15 45991747 45992089 -55388432 - MLT1C LTR MaLR -99 368 66 217 231 0 19 chr15 45992184 45992236 -55388285 + GA-rich Low_complexity Low_complexity 1 51 0 4521 49 16 0 chr15 45994520 45995075 -55385446 - L1PA8 LINE L1 -13 6159 5596 402 260 191 9 chr15 45995100 45995435 -55385086 + L1ME4a LINE L1 5726 6121 0 4130 136 2 0 chr15 45996043 45996670 -55383851 - L1PA16 LINE L1 -10 6156 5529 2096 140 7 0 chr15 45996702 45997010 -55383511 - AluSq SINE Alu -3 310 1 623 251 55 6 chr15 45997085 45997248 -55383273 - MER5B DNA MER1_type -1 177 7 422 271 155 0 chr15 45997965 45998120 -55382401 + MIR SINE MIR 73 251 -11 203 156 44 44 chr15 45998089 45998134 -55382387 + L2 LINE L2 3266 3310 -3 * 287 227 159 0 chr15 45998167 45998255 -55382266 - MIR SINE MIR -73 135 34 723 265 27 5 chr15 45998605 45998828 -55381693 - LTR16A1 LTR ERVL -14 443 216 189 329 51 0 chr15 45999186 45999265 -55381256 - L2 LINE L2 -43 3229 3147 420 339 52 22 chr15 45999899 46000129 -55380392 - MIR SINE MIR -20 242 6 835 231 189 14 chr15 46002631 46002981 -55377540 + LTR33 LTR ERVL 106 516 -5 410 342 91 13 chr15 46003359 46003590 -55376931 - MIR SINE MIR -8 254 6 520 299 63 76 chr15 46003600 46004142 -55376379 - MARNA DNA Mariner -11 575 41 2212 106 10 7 chr15 46004145 46004446 -55376075 + AluSc SINE Alu 1 302 -7 1397 141 5 5 chr15 46004449 46004655 -55375866 + AluSg/x SINE Alu 94 299 -13 873 238 56 10 chr15 46005269 46005571 -55374950 + L1MEc LINE L1 2070 2385 -4011 270 303 13 0 chr15 46005571 46005647 -55374874 - L2 LINE L2 -1018 2296 2220 437 129 0 0 chr15 46005840 46005902 -55374619 - MER8 DNA MER2_type 0 239 178 * 2500 130 46 28 chr15 46005900 46006155 -55374366 + Tigger2 DNA MER2_type 2273 2541 -177 2802 16 0 0 chr15 46006155 46006464 -55374057 + AluYb8 SINE Alu 1 309 -9 2500 130 46 28 chr15 46006464 46006645 -55373876 + Tigger2 DNA MER2_type 2541 2717 -1 372 324 69 14 chr15 46006774 46006919 -55373602 + MIR3 SINE MIR 50 202 -6 297 330 0 0 chr15 46007544 46007632 -55372889 - MIR SINE MIR -18 244 157 220 295 205 18 chr15 46007768 46007880 -55372641 - MIR3 SINE MIR -62 146 14 498 331 39 17 chr15 46008116 46008294 -55372227 + MIR3 SINE MIR 16 197 -11 443 310 90 28 chr15 46008466 46008721 -55371800 + MLT1K LTR MaLR 13 283 -305 369 149 0 0 chr15 46008739 46008806 -55371715 + (TC)n Simple_repeat Simple_repeat 2 68 0 226 0 59 0 chr15 46008877 46008911 -55371610 + (CAAAAA)n Simple_repeat Simple_repeat 3 38 0 604 311 43 10 chr15 46010289 46010498 -55370023 - L3 LINE CR1 -25 1552 1337 490 226 17 0 chr15 46010515 46010630 -55369891 - L1PA16 LINE L1 -5 6161 6045 472 211 10 0 chr15 46010630 46010734 -55369787 + LTR60 LTR ERV1 2 106 -480 1310 146 51 152 chr15 46010821 46010911 -55369610 + LTR60 LTR ERV1 147 245 -341 2183 120 7 0 chr15 46010911 46011211 -55369310 + AluSx SINE Alu 1 302 -10 1310 146 51 152 chr15 46011211 46011553 -55368968 + LTR60 LTR ERV1 245 535 -51 1118 173 30 94 chr15 46011410 46011739 -55368782 + TAR1 Satellite telomeric 4 311 -1800 * 4415 107 8 19 chr15 46011741 46012458 -55368063 - L1PA16 LINE L1 -117 6049 5341 1679 311 92 61 chr15 46012483 46013504 -55367017 - L3 LINE CR1 -266 1311 256 2723 106 0 11 chr15 46013504 46013883 -55366638 + THE1C LTR MaLR 1 375 0 1679 311 92 61 chr15 46013883 46013904 -55366617 - L3 LINE CR1 -1321 256 237 509 320 58 79 chr15 46015190 46015571 -55364950 - L2 LINE L2 -373 2941 2569 883 207 58 81 chr15 46015591 46015852 -55364669 - MIR SINE MIR 0 262 8 213 326 56 34 chr15 46016425 46016514 -55364007 + MIR SINE MIR 116 206 -56 377 248 228 0 chr15 46016600 46016745 -55363776 - MLT1I LTR MaLR 0 409 232 240 279 16 0 chr15 46016852 46016913 -55363608 - MLT1I LTR MaLR -347 62 1 2469 77 0 3 chr15 46016987 46017299 -55363222 + AluY SINE Alu 1 311 0 336 299 142 35 chr15 46017565 46017819 -55362702 + MLT1K LTR MaLR 289 569 -19 198 103 0 0 chr15 46018577 46018606 -55361915 + (CCA)n Simple_repeat Simple_repeat 1 29 0 198 0 0 0 chr15 46018693 46018715 -55361806 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 231 266 27 131 chr15 46018715 46018937 -55361584 - L2 LINE L2 -13 3300 3102 182 205 0 77 chr15 46018955 46018994 -55361527 + L2 LINE L2 3031 3066 -206 252 86 0 0 chr15 46019167 46019202 -55361319 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 198 0 0 0 chr15 46019202 46019224 -55361297 + (CA)n Simple_repeat Simple_repeat 2 23 0 251 252 31 24 chr15 46019238 46019365 -55361156 + (TA)n Simple_repeat Simple_repeat 2 129 0 767 191 0 14 chr15 46019368 46019509 -55361012 - FLAM_C SINE Alu -2 141 3 373 278 71 0 chr15 46019727 46019853 -55360668 - MIR SINE MIR -36 226 92 291 54 0 0 chr15 46022005 46022042 -55358479 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 490 282 106 35 chr15 46022932 46023102 -55357419 + MIR SINE MIR 47 228 -34 556 209 165 25 chr15 46023202 46023360 -55357161 - MER5A DNA MER1_type -6 183 4 2448 136 44 5 chr15 46024602 46025014 -55355507 + MSTA LTR MaLR 1 428 0 485 331 154 47 chr15 46025691 46026607 -55353914 + L3 LINE CR1 552 1565 -12 1006 109 10 36 chr15 46027121 46027134 -55353387 + L1MA8 LINE L1 6104 6116 -175 2574 141 29 9 chr15 46027134 46027554 -55352967 - MSTA LTR MaLR 0 428 1 1006 109 10 36 chr15 46027554 46027733 -55352788 + L1MA8 LINE L1 6116 6291 0 23 0 0 0 chr15 46028272 46028295 -55352226 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr15 46028686 46028715 -55351806 + AT_rich Low_complexity Low_complexity 1 29 0 423 258 53 33 chr15 46029505 46029822 -55350699 - L1M1 LINE L1 -4073 3033 2702 * 8061 138 14 13 chr15 46029814 46032367 -55348154 - L1MA2 LINE L1 0 6304 3752 1937 238 95 30 chr15 46032375 46034265 -55346256 - L1M1 LINE L1 -4393 2713 1044 1030 162 88 81 chr15 46034279 46034575 -55345946 - L1M1 LINE L1 -6732 298 1 674 171 79 7 chr15 46034605 46034757 -55345764 - L1MC4 LINE L1 -1422 6620 6458 261 163 0 0 chr15 46036904 46036953 -55343568 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 374 310 35 9 chr15 46037312 46037428 -55343093 + L2 LINE L2 3195 3313 0 29 28 0 0 chr15 46037484 46037520 -55343001 + AT_rich Low_complexity Low_complexity 1 36 0 563 175 44 18 chr15 46037849 46037963 -55342558 + L2 LINE L2 3193 3309 -4 189 0 0 0 chr15 46038736 46038757 -55341764 + (A)n Simple_repeat Simple_repeat 1 21 0 258 301 13 77 chr15 46040116 46040272 -55340249 + L2 LINE L2 2915 3060 -212 3116 24 3 0 chr15 46040411 46040780 -55339741 - L1PA4 LINE L1 -4 6151 5782 748 102 7 29 chr15 46041245 46041382 -55339139 + L1MA3 LINE L1 5922 6055 -250 720 180 0 16 chr15 46041382 46041510 -55339011 + FLAM_C SINE Alu 1 126 -17 189 0 0 0 chr15 46041523 46041544 -55338977 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1690 123 69 18 chr15 46041548 46041825 -55338696 + AluSx SINE Alu 1 291 -21 1407 145 15 15 chr15 46041834 46042096 -55338425 + L1MA3 LINE L1 6044 6305 0 561 258 31 0 chr15 46042712 46042840 -55337681 - MER45A DNA AcHobo -38 140 9 3358 110 6 18 chr15 46042843 46043344 -55337177 + LOR1a LTR ERV1 3 497 0 2415 98 86 15 chr15 46043659 46044055 -55336466 + MSTA LTR MaLR 5 428 0 412 232 39 88 chr15 46044181 46044362 -55336159 - L1M4 LINE L1 -2424 3722 3551 637 227 46 31 chr15 46044429 46044642 -55335879 + MLT1B LTR MaLR 1 205 -169 497 126 0 23 chr15 46044662 46044749 -55335772 + MLT1D LTR MaLR 419 503 -2 960 255 0 0 chr15 46044831 46045027 -55335494 + MLT1B LTR MaLR 195 390 0 679 223 66 12 chr15 46045115 46045371 -55335150 - L1M4 LINE L1 -2764 3382 3113 469 305 57 46 chr15 46045404 46045963 -55334558 + HAL1 LINE L1 747 1671 -836 962 195 104 133 chr15 46045963 46046094 -55334427 - MLT1D LTR MaLR -2 503 370 270 0 0 0 chr15 46046094 46046124 -55334397 + (TG)n Simple_repeat Simple_repeat 1 30 0 962 195 104 133 chr15 46046124 46046510 -55334011 - MLT1D LTR MaLR -135 370 1 469 305 57 46 chr15 46046510 46046612 -55333909 + HAL1 LINE L1 1671 1770 -737 873 260 106 54 chr15 46046661 46047181 -55333340 + HAL1 LINE L1 1888 2434 -73 406 259 99 15 chr15 46047243 46047374 -55333147 + MLT1J2 LTR MaLR 67 208 -242 227 191 0 0 chr15 46047496 46047538 -55332983 + MLT1J2 LTR MaLR 386 427 -23 953 242 53 23 chr15 46047555 46047819 -55332702 + MLT1G LTR MaLR 10 281 -309 329 171 77 3 chr15 46047886 46047980 -55332541 + MLT1G3 LTR MaLR 470 549 0 450 208 45 93 chr15 46048150 46048419 -55332102 + MER112 DNA MER1_type 1 256 0 724 204 8 0 chr15 46051748 46051880 -55328641 - FLAM_C SINE Alu 0 133 1 1499 198 61 71 chr15 46053852 46054300 -55326221 - LTR10B LTR ERV1 0 547 16 5786 128 78 20 chr15 46055776 46056859 -55323662 - Tigger3b DNA MER2_type -1 1230 85 1877 65 38 0 chr15 46057164 46057425 -55323096 - L1PA7 LINE L1 0 6154 5884 737 242 58 42 chr15 46058333 46058638 -55321883 + L1ME1 LINE L1 5821 6276 -36 3638 106 19 8 chr15 46059030 46059547 -55320974 + MER1A DNA MER1_type 1 523 -6 21 36 0 0 chr15 46059617 46059645 -55320876 + AT_rich Low_complexity Low_complexity 1 28 0 1915 134 20 7 chr15 46059800 46060106 -55320415 + AluSx SINE Alu 1 310 -2 31 44 0 0 chr15 46060412 46060457 -55320064 + AT_rich Low_complexity Low_complexity 1 45 0 249 98 0 0 chr15 46061351 46061392 -55319129 + (TA)n Simple_repeat Simple_repeat 1 41 0 1693 176 17 3 chr15 46061662 46061952 -55318569 - AluJo SINE Alu -18 294 1 23 78 0 0 chr15 46061967 46062018 -55318503 + AT_rich Low_complexity Low_complexity 1 51 0 337 203 16 0 chr15 46062087 46062151 -55318370 - L2 LINE L2 0 3272 3208 344 276 148 28 chr15 46062255 46062505 -55318016 - L1ME LINE L1 -413 5708 5429 26 64 0 0 chr15 46062630 46062677 -55317844 + AT_rich Low_complexity Low_complexity 1 47 0 419 202 123 136 chr15 46063153 46063355 -55317166 - L1MC4 LINE L1 -3 8039 7839 2074 125 7 0 chr15 46063355 46063652 -55316869 - AluSx SINE Alu -13 299 1 419 202 123 136 chr15 46063652 46063692 -55316829 - L1MC4 LINE L1 -203 7839 7800 1936 112 20 10 chr15 46063815 46064111 -55316410 - AluSx SINE Alu -13 299 1 1052 234 40 99 chr15 46064135 46064640 -55315881 - L1MD2 LINE L1 0 6162 5688 683 241 96 35 chr15 46064646 46064928 -55315593 - L1MC4 LINE L1 -219 7823 7525 1726 224 99 73 chr15 46065100 46065850 -55314671 - L1MD3 LINE L1 -447 7548 6687 323 260 42 21 chr15 46067426 46067522 -55312999 - MIR SINE MIR -49 213 116 1739 185 0 3 chr15 46067596 46067888 -55312633 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr15 46068252 46068273 -55312248 + AT_rich Low_complexity Low_complexity 1 21 0 1221 265 138 11 chr15 46068559 46069205 -55311316 - L1ME3 LINE L1 -290 6266 5549 246 245 22 39 chr15 46069431 46069593 -55310928 - L1ME3 LINE L1 -3928 2612 2452 429 291 85 33 chr15 46069990 46070034 -55310487 - L1MCa LINE L1 -894 1893 1853 201 39 0 0 chr15 46070034 46070060 -55310461 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 429 291 85 33 chr15 46070060 46070448 -55310073 - L1MCa LINE L1 -934 1853 1253 1602 168 10 48 chr15 46070948 46071257 -55309264 + AluJo SINE Alu 1 297 -15 258 105 0 0 chr15 46071605 46071643 -55308878 + (T)n Simple_repeat Simple_repeat 1 38 0 508 269 249 10 chr15 46072390 46072583 -55307938 + MIR SINE MIR 14 252 -10 633 250 42 12 chr15 46072601 46072769 -55307752 + MLT1K LTR MaLR 301 473 -115 1284 267 111 34 chr15 46072784 46073260 -55307261 + LTR33 LTR ERVL 1 513 -8 465 243 101 14 chr15 46073341 46073489 -55307032 - MER103 DNA DNA 0 166 6 368 268 11 20 chr15 46073546 46073658 -55306863 - MIR SINE MIR -70 138 38 206 118 0 0 chr15 46074180 46074214 -55306307 + (T)n Simple_repeat Simple_repeat 1 34 0 319 320 146 22 chr15 46074362 46074540 -55305981 + MLT1H LTR MaLR 240 439 -110 371 314 0 40 chr15 46075235 46075410 -55305111 - MLT2E LTR ERVL 0 628 461 347 230 93 7 chr15 46076133 46076272 -55304249 + HAL1 LINE L1 975 1125 -1382 1789 143 11 11 chr15 46076631 46076918 -55303603 - AluSx SINE Alu -25 287 1 1133 245 212 27 chr15 46077225 46077743 -55302778 + HAL1 LINE L1 1125 1738 -769 2273 113 0 3 chr15 46077772 46078081 -55302440 + AluSx SINE Alu 1 308 -4 1527 246 54 56 chr15 46078115 46078837 -55301684 - L2 LINE L2 0 3313 2494 336 301 64 35 chr15 46078840 46079013 -55301508 + LTR16A LTR ERVL 1 178 -272 402 275 107 0 chr15 46079084 46079215 -55301306 + LTR16A LTR ERVL 301 445 -5 270 234 47 0 chr15 46079241 46079305 -55301216 + HERV16 LTR ERVL 74 140 -4856 1466 343 68 48 chr15 46079540 46080901 -55299620 + ERVL LTR ERVL 3935 5323 -441 368 353 65 0 chr15 46081089 46081242 -55299279 + LTR16A LTR ERVL 1 163 -287 266 256 23 12 chr15 46081325 46081411 -55299110 + MLT1H LTR MaLR 467 553 -2 1329 231 72 24 chr15 46081451 46081827 -55298694 + MLT1D LTR MaLR 69 462 -43 284 272 98 47 chr15 46081920 46082174 -55298347 + MLT1D-int LTR MaLR 322 588 -783 524 254 69 61 chr15 46082622 46082923 -55297598 + MLT1H LTR MaLR 1 335 -260 279 189 0 19 chr15 46082925 46082978 -55297543 - MLT1A2 LTR MaLR 0 374 323 1433 208 22 56 chr15 46083082 46083438 -55297083 - MLT1A2 LTR MaLR 0 374 31 520 249 161 19 chr15 46083452 46083657 -55296864 + MLT1H LTR MaLR 322 555 0 25 65 0 0 chr15 46084693 46084739 -55295782 + AT_rich Low_complexity Low_complexity 1 46 0 441 236 6 28 chr15 46085083 46085265 -55295256 + GA-rich Low_complexity Low_complexity 2 179 0 3048 239 67 14 chr15 46085897 46086926 -55293595 - L1M4 LINE L1 -2090 4056 2973 22 0 0 0 chr15 46087200 46087222 -55293299 + AT_rich Low_complexity Low_complexity 1 22 0 1981 139 14 0 chr15 46087228 46087523 -55292998 + AluSx SINE Alu 6 304 -8 23 54 0 0 chr15 46088038 46088075 -55292446 + AT_rich Low_complexity Low_complexity 1 37 0 270 224 0 0 chr15 46088404 46088453 -55292068 - L2 LINE L2 0 3313 3265 4222 231 84 45 chr15 46088486 46088514 -55292007 - L1M4 LINE L1 -1780 4366 4341 2400 158 30 2 chr15 46088514 46088920 -55291601 - MER47B DNA MER2_type 0 418 2 4222 231 84 45 chr15 46088920 46090590 -55289931 - L1M4 LINE L1 -1805 4341 2603 21 0 0 0 chr15 46090887 46090908 -55289613 + AT_rich Low_complexity Low_complexity 1 21 0 387 353 101 55 chr15 46092312 46092748 -55287773 + L2 LINE L2 2807 3262 -10 956 196 48 0 chr15 46093802 46094011 -55286510 + L1ME3A LINE L1 5944 6162 -8 259 292 76 69 chr15 46094346 46094408 -55286113 - MIR3 SINE MIR -28 180 120 4696 80 26 0 chr15 46094408 46095049 -55285472 - L1PA13 LINE L1 -3 6160 5503 259 292 76 69 chr15 46095049 46095130 -55285391 - MIR3 SINE MIR -88 120 36 643 176 0 66 chr15 46095514 46095650 -55284871 + MER97a DNA MER1_type? 14 140 -754 682 219 124 39 chr15 46097157 46097390 -55283131 + L1ME2 LINE L1 5902 6154 -10 196 29 0 57 chr15 46099334 46099369 -55281152 + (TTTTTA)n Simple_repeat Simple_repeat 2 34 0 282 284 126 21 chr15 46099694 46099789 -55280732 + MIR3 SINE MIR 83 187 -21 1262 283 88 54 chr15 46099854 46100597 -55279924 + HAL1 LINE L1 1664 2431 -76 21 36 0 0 chr15 46100716 46100744 -55279777 + AT_rich Low_complexity Low_complexity 1 28 0 452 121 141 30 chr15 46101043 46101142 -55279379 + MER53 DNA DNA 2 111 -78 195 244 0 0 chr15 46105429 46105470 -55275051 - L2 LINE L2 -217 3055 3015 1665 164 29 25 chr15 46105472 46105772 -55274749 - AluJb SINE Alu 0 301 1 639 333 81 55 chr15 46106329 46106872 -55273649 - L2 LINE L2 -490 2824 2268 297 290 8 69 chr15 46108151 46108282 -55272239 + L2 LINE L2 2325 2447 -867 858 267 27 35 chr15 46108313 46108571 -55271950 + MIR SINE MIR 2 257 -5 6297 136 13 7 chr15 46109354 46110835 -55269686 + L1MA4A LINE L1 4802 6292 -11 537 293 136 5 chr15 46113058 46113256 -55267265 + MIR SINE MIR 2 225 -37 249 139 0 0 chr15 46113269 46113312 -55267209 + (CA)n Simple_repeat Simple_repeat 2 44 0 382 195 39 0 chr15 46113312 46113389 -55267132 - MER82 DNA MER2_type -4 649 570 594 283 85 6 chr15 46113415 46113592 -55266929 + MIR3 SINE MIR 8 198 -10 479 257 11 57 chr15 46114185 46114344 -55266177 - LTR33A LTR ERVL -24 499 347 1114 180 6 80 chr15 46114344 46114612 -55265909 + MER33 DNA MER1_type 1 239 -2346 2102 129 3 0 chr15 46114612 46114907 -55265614 - AluSx SINE Alu -16 296 1 1114 180 6 80 chr15 46114907 46114988 -55265533 + MER33 DNA MER1_type 239 324 0 479 257 11 57 chr15 46114988 46115003 -55265518 - LTR33A LTR ERVL -176 347 333 219 359 134 47 chr15 46115593 46115913 -55264608 - L2 LINE L2 -6 3266 2919 336 257 177 0 chr15 46116132 46116245 -55264276 + L2 LINE L2 3140 3272 0 415 304 0 0 chr15 46116958 46117073 -55263448 + MIR SINE MIR 140 254 -8 2334 74 0 0 chr15 46118093 46118416 -55262105 + AluY SINE Alu 1 323 0 2984 262 71 38 chr15 46118852 46119379 -55261142 - L2 LINE L2 -149 3164 2656 2235 117 7 0 chr15 46119379 46119678 -55260843 - AluSx SINE Alu -11 301 1 2984 262 71 38 chr15 46119678 46120346 -55260175 - L2 LINE L2 -657 2656 1925 219 323 55 51 chr15 46121073 46121290 -55259231 - L2 LINE L2 -967 2347 2130 504 157 0 0 chr15 46122608 46122691 -55257830 - FLAM_A SINE Alu -13 129 47 880 297 135 14 chr15 46123936 46124283 -55256238 - MLT1J2 LTR MaLR 0 450 62 6520 122 56 0 chr15 46124841 46125903 -55254618 + Tigger3b DNA MER2_type 21 1141 -90 857 136 21 0 chr15 46125910 46126050 -55254471 + Tigger3b DNA MER2_type 277 419 -812 598 175 31 0 chr15 46126050 46126147 -55254374 + Tigger3b DNA MER2_type 1132 1231 0 2925 75 90 2 chr15 46126835 46127247 -55253274 - LTR7 LTR ERV1 -2 448 1 7704 94 26 4 chr15 46127247 46128971 -55251550 - HERVH LTR ERV1 0 7713 5769 1236 126 16 0 chr15 46128957 46129147 -55251374 - HERVH LTR ERV1 -3033 4680 4488 * 3338 117 4 6 chr15 46129149 46129652 -55250869 - HERVH LTR ERV1 -3720 3993 3492 970 133 7 0 chr15 46129642 46129792 -55250729 - HERVH LTR ERV1 -4423 3290 3140 * 15694 104 16 26 chr15 46129771 46132660 -55247861 - HERVH LTR ERV1 -4718 2995 1 2951 70 90 2 chr15 46132662 46133074 -55247447 - LTR7 LTR ERV1 -2 448 1 836 280 156 24 chr15 46133341 46134151 -55246370 - L1ME LINE L1 -393 6731 5751 327 104 0 0 chr15 46134151 46134199 -55246322 + (TA)n Simple_repeat Simple_repeat 1 48 0 836 280 156 24 chr15 46134199 46134407 -55246114 - L1ME LINE L1 -1373 5751 5572 5096 117 10 9 chr15 46135968 46137286 -55243235 - L1PA14 LINE L1 -190 5971 4655 2559 241 91 25 chr15 46137273 46139299 -55241222 - L1ME LINE L1 -4084 3024 1243 * 269 213 16 16 chr15 46139299 46139360 -55241161 + L2 LINE L2 2701 2761 -553 288 130 0 0 chr15 46139360 46139406 -55241115 + (TC)n Simple_repeat Simple_repeat 1 46 0 501 343 68 13 chr15 46139486 46139722 -55240799 + L2 LINE L2 2853 3101 -212 413 236 27 27 chr15 46140319 46140429 -55240092 + L2 LINE L2 3163 3272 0 199 268 0 0 chr15 46141057 46141098 -55239423 - MIR3 SINE MIR -10 198 158 251 338 58 7 chr15 46141223 46141362 -55239159 - MIR3 SINE MIR -56 152 7 2058 82 28 0 chr15 46141999 46142317 -55238204 - L1PA7 LINE L1 -752 5394 5068 1336 42 0 0 chr15 46142315 46142482 -55238039 + L1PA7 LINE L1 5395 5561 -593 * 2084 60 11 0 chr15 46142482 46142749 -55237772 + L1PA7 LINE L1 5884 6154 0 1047 267 166 52 chr15 46142762 46143316 -55237205 - MLT1E1 LTR MaLR -36 618 1 216 337 84 11 chr15 46143330 46143425 -55237096 - MIR SINE MIR -152 110 9 295 362 63 30 chr15 46143832 46144100 -55236421 - L2 LINE L2 -565 2749 2473 595 274 98 0 chr15 46144326 46144479 -55236042 + MER5A DNA MER1_type 22 189 0 212 281 8 15 chr15 46145131 46145198 -55235323 + MIR SINE MIR 102 168 -57 238 255 0 0 chr15 46146902 46146953 -55233568 - MIR3 SINE MIR -7 201 151 2256 192 31 41 chr15 46146980 46147491 -55233030 - MER74A LTR ERVL 0 558 53 2422 65 3 0 chr15 46147606 46147913 -55232608 - AluY SINE Alu -3 308 1 818 162 33 17 chr15 46149742 46149956 -55230565 + MLT1D LTR MaLR 1 168 -337 2958 206 109 16 chr15 46150269 46151203 -55229318 - Charlie1 DNA MER1_type -4 2757 1737 353 276 73 0 chr15 46151549 46151672 -55228849 + MIR SINE MIR 131 262 0 258 32 0 0 chr15 46152080 46152111 -55228410 + (CA)n Simple_repeat Simple_repeat 2 32 0 352 333 42 50 chr15 46152682 46152922 -55227599 + MIR SINE MIR 20 257 -5 1725 269 22 50 chr15 46152947 46153643 -55226878 + L1M2a LINE L1 49 724 -6485 4478 223 29 12 chr15 46153952 46155210 -55225311 + L1M2a LINE L1 1750 3049 -4160 2496 101 31 3 chr15 46155296 46155682 -55224839 + L1PA11 LINE L1 5693 6089 -85 1925 148 40 28 chr15 46155686 46156038 -55224483 + THE1B LTR MaLR 7 362 -2 536 56 14 0 chr15 46156038 46156109 -55224412 + L1PA10 LINE L1 6081 6152 -16 214 254 0 17 chr15 46156278 46156337 -55224184 + L2 LINE L2 3161 3218 -95 809 234 61 17 chr15 46156700 46157111 -55223410 + L1M1 LINE L1 3163 3602 -3963 5534 195 68 7 chr15 46157182 46158066 -55222455 + L1M1 LINE L1 3620 4632 -2933 1498 199 3 62 chr15 46158066 46158387 -55222134 + AluJo SINE Alu 1 302 -10 5534 195 68 7 chr15 46158387 46158998 -55221523 + L1M1 LINE L1 4632 5205 -2360 413 303 17 52 chr15 46159004 46159294 -55221227 + L1PA16 LINE L1 2 281 -7300 1563 148 31 34 chr15 46160050 46160375 -55220146 - THE1C LTR MaLR 0 375 52 1926 157 77 32 chr15 46160375 46160814 -55219707 - LTR2B LTR ERV1 0 490 32 382 136 0 0 chr15 46160824 46160890 -55219631 - THE1C LTR MaLR -362 66 1 9378 118 46 13 chr15 46160890 46162113 -55218408 - THE1C-int LTR MaLR 0 1580 296 850 135 142 176 chr15 46162113 46162579 -55217942 - LTR7 LTR ERV1 0 450 1 9378 118 46 13 chr15 46162579 46162885 -55217636 - THE1C-int LTR MaLR -1284 296 1 1834 168 21 24 chr15 46162885 46163261 -55217260 - THE1C LTR MaLR 0 375 1 13857 212 16 17 chr15 46163821 46166300 -55214221 + L1PA16 LINE L1 2319 4800 -2804 216 0 0 0 chr15 46166300 46166324 -55214197 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 13857 212 16 17 chr15 46166324 46169102 -55211419 + L1PA16 LINE L1 4800 7604 0 2696 150 28 4 chr15 46169102 46169603 -55210918 + L1MA6 LINE L1 5769 6288 -12 8839 193 18 5 chr15 46169661 46171352 -55209169 + L1MA3 LINE L1 13 1725 -5840 1123 75 19 47 chr15 46171349 46171562 -55208959 + L1MA3 LINE L1 3366 3572 -3993 * 12918 162 23 10 chr15 46171567 46174232 -55206289 + L1MA3 LINE L1 4027 6756 -968 2270 128 0 0 chr15 46174232 46174537 -55205984 - AluSq SINE Alu -8 305 1 12918 162 23 10 chr15 46174537 46175179 -55205342 + L1MA3 LINE L1 6756 7388 -336 216 313 188 0 chr15 46175273 46175369 -55205152 + L2 LINE L2 3180 3293 -20 190 310 56 0 chr15 46175410 46175481 -55205040 - MIR SINE MIR -3 259 185 1878 275 106 30 chr15 46175498 46176530 -55203991 - L2 LINE L2 0 3313 2187 697 178 8 16 chr15 46176619 46176748 -55203773 - FLAM_C SINE Alu -5 128 1 23 0 0 0 chr15 46176753 46176776 -55203745 + AT_rich Low_complexity Low_complexity 1 23 0 711 318 58 18 chr15 46176834 46177108 -55203413 - L2 LINE L2 -1108 2206 1922 395 331 24 0 chr15 46177139 46177266 -55203255 - MIR SINE MIR -113 149 20 478 328 53 12 chr15 46177280 46177451 -55203070 + MER91A DNA MER1_type 14 191 -5 368 308 19 0 chr15 46177510 46177614 -55202907 + MER5B DNA MER1_type 2 107 -71 297 268 63 31 chr15 46178399 46178526 -55201995 - MIR3 SINE MIR -47 161 31 211 325 171 0 chr15 46178594 46178717 -55201804 - MER5B DNA MER1_type -30 148 5 2618 219 19 55 chr15 46184777 46185520 -55195001 + L1MB7 LINE L1 13 728 -5814 3547 204 28 10 chr15 46185520 46186889 -55193632 + L1MB7 LINE L1 5228 6666 -16 236 358 97 55 chr15 46186914 46187244 -55193277 - L2 LINE L2 -15 3257 2914 39 80 0 0 chr15 46187841 46187929 -55192592 + AT_rich Low_complexity Low_complexity 1 88 0 887 279 96 38 chr15 46189078 46190131 -55190390 + L1M4 LINE L1 1301 2484 -4341 10740 202 45 46 chr15 46190331 46190577 -55189944 - L1MB1 LINE L1 -115 6257 6012 345 47 0 0 chr15 46190577 46190620 -55189901 + (TG)n Simple_repeat Simple_repeat 1 43 0 189 74 0 0 chr15 46190621 46190648 -55189873 + (TA)n Simple_repeat Simple_repeat 1 27 0 10740 202 45 46 chr15 46190648 46191573 -55188948 - L1MB1 LINE L1 -360 6012 5088 2575 176 65 6 chr15 46191573 46192062 -55188459 + MLT2B1 LTR ERVL 1 518 -2 10740 202 45 46 chr15 46192062 46192290 -55188231 - L1MB1 LINE L1 -1284 5088 4861 2731 148 18 12 chr15 46192290 46192790 -55187731 - L1PA15 LINE L1 -9 6156 5654 10740 202 45 46 chr15 46192790 46195059 -55185462 - L1MB1 LINE L1 -1511 4861 2594 1431 234 62 31 chr15 46195056 46195606 -55184915 - L1MB1 LINE L1 -4523 1748 1157 * 529 291 136 48 chr15 46195622 46195917 -55184604 - L1MB1 LINE L1 -5920 361 1 438 279 84 13 chr15 46198198 46198352 -55182169 + MIR SINE MIR 86 250 -12 201 226 0 0 chr15 46198748 46198801 -55181720 + (CA)n Simple_repeat Simple_repeat 2 54 0 375 296 122 15 chr15 46198858 46199054 -55181467 + MIR SINE MIR 15 231 -31 1020 80 0 0 chr15 46199058 46199195 -55181326 - AluY SINE Alu 0 311 175 25 31 0 0 chr15 46199232 46199264 -55181257 + AT_rich Low_complexity Low_complexity 1 32 0 329 275 72 0 chr15 46199398 46199536 -55180985 + L1ME4a LINE L1 5971 6118 -3 345 109 0 0 chr15 46199698 46199753 -55180768 + (TC)n Simple_repeat Simple_repeat 2 56 0 665 176 7 0 chr15 46200167 46200309 -55180212 - Charlie5 DNA MER1_type 0 2624 2482 435 167 0 0 chr15 46200320 46200386 -55180135 - Charlie5 DNA MER1_type -2545 67 2 216 130 43 0 chr15 46200430 46200499 -55180022 + (TA)n Simple_repeat Simple_repeat 2 73 0 236 320 17 61 chr15 46200499 46200680 -55179841 - L1ME LINE L1 -383 5787 5615 557 212 143 44 chr15 46200845 46201048 -55179473 + MIR SINE MIR 40 262 0 234 302 138 31 chr15 46201157 46201316 -55179205 - MIR3 SINE MIR 0 208 33 558 251 49 34 chr15 46201716 46201979 -55178542 - L1ME LINE L1 -5245 825 559 2236 113 3 0 chr15 46202001 46202294 -55178227 - AluSx SINE Alu -18 294 1 524 221 30 23 chr15 46202315 46202446 -55178075 + MIR SINE MIR 87 218 -44 1545 184 48 0 chr15 46202628 46202900 -55177621 - AluJb SINE Alu -21 291 7 1174 164 0 0 chr15 46203243 46203414 -55177107 + AluSg/x SINE Alu 109 279 -33 369 0 0 0 chr15 46203414 46203455 -55177066 + (CA)n Simple_repeat Simple_repeat 1 41 0 809 288 122 36 chr15 46203456 46204089 -55176432 + L2 LINE L2 2531 3222 -91 811 295 95 16 chr15 46204089 46204519 -55176002 - LTR16B LTR ERVL 0 464 1 809 288 122 36 chr15 46204519 46204620 -55175901 + L2 LINE L2 3222 3313 0 248 284 110 29 chr15 46204614 46204736 -55175785 - MIR3 SINE MIR -109 99 4 * 2207 100 10 0 chr15 46205054 46205343 -55175178 - AluSq SINE Alu -21 292 1 188 333 0 0 chr15 46206219 46206267 -55174254 + MER5B DNA MER1_type 54 101 -77 2310 164 11 34 chr15 46206290 46206735 -55173786 - L1MC1 LINE L1 -85 6248 5814 252 161 0 0 chr15 46206735 46206797 -55173724 + T-rich Low_complexity Low_complexity 1 62 0 42535 35 24 0 chr15 46206842 46212851 -55167670 - L1PA2 LINE L1 0 6155 1 6483 199 44 8 chr15 46212851 46214907 -55165614 - L1MC1 LINE L1 -507 5826 3695 2230 251 42 27 chr15 46214925 46215590 -55164931 - L1ME1 LINE L1 -4 6231 5557 * 5131 236 60 36 chr15 46215576 46218272 -55162249 - L1ME1 LINE L1 -2339 3876 1246 186 43 0 0 chr15 46218272 46218295 -55162226 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 3760 39 0 13 chr15 46218305 46218769 -55161752 - L1PA4 LINE L1 0 6155 5698 5131 236 60 36 chr15 46218769 46219299 -55161222 - L1ME1 LINE L1 -4977 1238 615 528 215 8 23 chr15 46219303 46219433 -55161088 - L1ME1 LINE L1 -5842 554 427 427 117 0 0 chr15 46220094 46220154 -55160367 + FLAM_A SINE Alu 41 100 -42 1157 301 100 19 chr15 46220176 46220744 -55159777 + HAL1 LINE L1 403 1016 -1491 546 254 119 53 chr15 46221336 46221587 -55158934 + HAL1 LINE L1 1012 1245 -1262 1926 158 3 10 chr15 46221587 46221890 -55158631 - AluJo SINE Alu -9 303 3 546 254 119 53 chr15 46221890 46222169 -55158352 + HAL1 LINE L1 1245 1577 -930 281 232 24 61 chr15 46222229 46222311 -55158210 + HAL1 LINE L1 1695 1773 -734 276 302 0 0 chr15 46223959 46224045 -55156476 + (TTCGGG)n Simple_repeat Simple_repeat 6 91 0 7760 16 8 0 chr15 46225208 46226195 -55154326 - L1PA3 LINE L1 0 6155 5163 22 0 0 0 chr15 46227464 46227486 -55153035 + AT_rich Low_complexity Low_complexity 1 22 0 748 268 87 44 chr15 46227716 46228197 -55152324 + HAL1 LINE L1 2006 2507 0 1756 244 53 62 chr15 46228340 46228888 -55151633 - MLT1H LTR MaLR 0 549 7 368 217 42 83 chr15 46229346 46229490 -55151031 + L1MD2 LINE L1 6006 6142 -24 2750 19 3 0 chr15 46230879 46231189 -55149332 - AluY SINE Alu 0 311 1 450 282 67 7 chr15 46231450 46231599 -55148922 + MER69A DNA AcHobo 20 177 0 2244 137 39 20 chr15 46231733 46232090 -55148431 - THE1B LTR MaLR 0 364 1 10477 88 93 1 chr15 46232090 46233537 -55146984 - THE1B-int LTR MaLR 0 1580 1 2010 142 60 31 chr15 46233537 46233889 -55146632 - THE1B LTR MaLR 0 364 3 2002 143 7 0 chr15 46234290 46234576 -55145945 - AluSx SINE Alu -24 288 1 356 261 217 25 chr15 46234992 46235195 -55145326 + MIR SINE MIR 20 261 -1 372 315 37 0 chr15 46235786 46235894 -55144627 - MIR3 SINE MIR -21 187 76 22 35 0 0 chr15 46236165 46236194 -55144327 + AT_rich Low_complexity Low_complexity 1 29 0 1039 165 63 44 chr15 46236667 46236873 -55143648 - MER63A DNA MER1_type 0 210 1 914 280 27 27 chr15 46237440 46237769 -55142752 - MARNA DNA Mariner -149 437 109 332 225 27 128 chr15 46237688 46237875 -55142646 + MARNA DNA Mariner 396 563 -23 * 415 319 118 0 chr15 46237895 46238030 -55142491 - MIR SINE MIR -11 251 101 356 288 8 96 chr15 46238598 46238723 -55141798 + MER5B DNA MER1_type 65 178 0 466 254 0 9 chr15 46239010 46239120 -55141401 + MIR SINE MIR 63 171 -91 266 251 121 42 chr15 46239306 46239554 -55140967 + L1M4 LINE L1 5539 5804 -374 236 239 0 30 chr15 46239758 46239825 -55140696 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 514 266 157 56 chr15 46239904 46240419 -55140102 - L1MC4a LINE L1 -1926 5882 5316 289 325 20 33 chr15 46240666 46240871 -55139650 - MIR SINE MIR -6 256 3 336 238 0 0 chr15 46240893 46240977 -55139544 + CT-rich Low_complexity Low_complexity 2 85 0 659 234 102 36 chr15 46242252 46242419 -55138102 + MER45A DNA AcHobo 1 178 0 337 330 28 0 chr15 46243644 46243780 -55136741 + MIR SINE MIR 5 151 -62 667 205 0 16 chr15 46243966 46244093 -55136428 + MER5B DNA MER1_type 44 168 -10 194 313 0 31 chr15 46244185 46244249 -55136272 + L2 LINE L2 3242 3303 -10 530 244 71 41 chr15 46244877 46245074 -55135447 - MIR SINE MIR -40 222 20 390 211 0 0 chr15 46245273 46245349 -55135172 + MER5A DNA MER1_type 34 109 -80 423 270 27 40 chr15 46245440 46245588 -55134933 - MER5A DNA MER1_type -1 188 43 231 158 250 13 chr15 46246060 46246136 -55134385 - MIR SINE MIR -47 215 122 317 335 168 0 chr15 46246471 46246638 -55133883 + MIR SINE MIR 51 245 -17 4920 142 63 3 chr15 46246759 46247655 -55132866 + L1PA16 LINE L1 3068 6157 -9 449 277 61 0 chr15 46248010 46248158 -55132363 - L1MC4 LINE L1 -525 7517 7361 3917 250 66 63 chr15 46248164 46249669 -55130852 - L1MC4 LINE L1 -11 8031 6532 324 0 0 0 chr15 46249669 46249705 -55130816 + (TG)n Simple_repeat Simple_repeat 1 36 0 3917 250 66 63 chr15 46249705 46249783 -55130738 - L1MC4 LINE L1 -1510 6532 6456 3206 112 48 4 chr15 46249783 46250285 -55130236 - L1PB1 LINE L1 -3 6148 5625 3917 250 66 63 chr15 46250285 46251364 -55129157 - L1MC4 LINE L1 -1586 6456 5263 684 180 66 38 chr15 46251659 46251842 -55128679 + MER53 DNA DNA 1 188 -1 186 200 0 0 chr15 46252344 46252379 -55128142 - MIR SINE MIR -114 148 114 395 291 16 59 chr15 46252834 46253015 -55127506 - MIR SINE MIR -63 145 19 210 37 0 0 chr15 46253191 46253218 -55127303 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1823 151 25 50 chr15 46253774 46254132 -55126389 + MLT1A1 LTR MaLR 16 364 -1 3597 128 7 14 chr15 46254155 46254492 -55126029 - Tigger1 DNA MER2_type 0 2418 2080 378 0 0 0 chr15 46254492 46254534 -55125987 + (TTA)n Simple_repeat Simple_repeat 3 44 0 2299 57 3 14 chr15 46254534 46254831 -55125690 - L1PA6 LINE L1 -18 6136 5843 3597 128 7 14 chr15 46254831 46255049 -55125472 - Tigger1 DNA MER2_type -336 2082 1866 21 0 0 0 chr15 46255347 46255368 -55125153 + AT_rich Low_complexity Low_complexity 1 21 0 180 121 15 45 chr15 46258175 46258241 -55122280 + (TTTG)n Simple_repeat Simple_repeat 2 65 0 286 372 74 8 chr15 46258265 46258386 -55122135 + MIR SINE MIR 6 134 -128 436 244 17 89 chr15 46258463 46258643 -55121878 + MIR SINE MIR 75 241 -21 212 282 42 42 chr15 46258815 46258886 -55121635 + MIR SINE MIR 12 82 -180 338 265 0 0 chr15 46258912 46258995 -55121526 - MIR SINE MIR -74 188 106 2063 130 3 10 chr15 46259251 46259558 -55120963 - AluSg SINE Alu -5 305 1 196 66 131 0 chr15 46260535 46260596 -55119925 + (TTAA)n Simple_repeat Simple_repeat 1 69 0 292 230 108 0 chr15 46260970 46261044 -55119477 + L2 LINE L2 3231 3312 -1 2081 114 13 23 chr15 46261131 46261439 -55119082 - AluSg SINE Alu -4 306 2 540 0 0 0 chr15 46261439 46261499 -55119022 + (TC)n Simple_repeat Simple_repeat 2 61 0 443 221 0 9 chr15 46261499 46261612 -55118909 + (TA)n Simple_repeat Simple_repeat 2 113 0 4385 71 3 7 chr15 46261625 46262200 -55118321 - L1PA7 LINE L1 -20 6134 5562 265 337 0 11 chr15 46263721 46263816 -55116705 + GA-rich Low_complexity Low_complexity 1 94 0 22 0 0 0 chr15 46264549 46264571 -55115950 + AT_rich Low_complexity Low_complexity 1 22 0 2461 94 0 0 chr15 46264730 46265039 -55115482 + AluSc SINE Alu 1 309 0 448 243 10 0 chr15 46266098 46266201 -55114320 - MER94 DNA DNA -30 104 1 790 212 0 48 chr15 46266698 46266863 -55113658 - AluJo SINE Alu -9 293 137 929 247 150 32 chr15 46266864 46267456 -55113065 + HAL1 LINE L1 978 1639 -868 1434 104 16 32 chr15 46267502 46267751 -55112770 + L1MA2 LINE L1 6060 6304 0 875 133 0 44 chr15 46269116 46269251 -55111270 - AluJo SINE Alu -183 129 1 2460 57 0 0 chr15 46269350 46269649 -55110872 + AluY SINE Alu 1 299 -12 599 306 6 0 chr15 46271266 46271423 -55109098 - MIR SINE MIR 0 262 105 784 225 61 39 chr15 46272909 46273078 -55107443 + L2 LINE L2 2535 2716 -598 2301 167 94 15 chr15 46273078 46273544 -55106977 - MLT1D LTR MaLR -2 503 1 784 225 61 39 chr15 46273544 46273685 -55106836 + L2 LINE L2 2716 2852 -462 1757 272 147 0 chr15 46273685 46274255 -55106266 + MER69 DNA AcHobo 1 654 -1872 209 73 0 49 chr15 46274266 46274307 -55106214 + (TATATG)n Simple_repeat Simple_repeat 5 43 0 39 38 0 0 chr15 46274328 46274381 -55106140 + AT_rich Low_complexity Low_complexity 1 53 0 658 153 47 19 chr15 46274387 46275168 -55105353 + (TA)n Simple_repeat Simple_repeat 1 803 0 325 188 10 78 chr15 46275191 46275383 -55105138 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 28 0 0 0 chr15 46275389 46275417 -55105104 + AT_rich Low_complexity Low_complexity 1 28 0 291 119 119 0 chr15 46275423 46275582 -55104939 + (TA)n Simple_repeat Simple_repeat 1 178 0 280 114 89 0 chr15 46275601 46275759 -55104762 + (TA)n Simple_repeat Simple_repeat 1 172 0 406 97 67 18 chr15 46275803 46275968 -55104553 + (TA)n Simple_repeat Simple_repeat 2 174 0 234 174 0 0 chr15 46275976 46276022 -55104499 - MER69 DNA AcHobo -1873 653 608 407 236 9 38 chr15 46276074 46276180 -55104341 + MER69 DNA AcHobo 699 801 -425 1194 232 75 7 chr15 46276181 46276595 -55103926 + MER69 DNA AcHobo 2017 2458 -68 1172 161 177 4 chr15 46276624 46276872 -55103649 + AluSx SINE Alu 1 291 -11 638 68 78 0 chr15 46277029 46277132 -55103389 + L1PA8 LINE L1 6062 6172 0 1374 186 15 22 chr15 46277133 46277402 -55103119 + MLT1A1 LTR MaLR 49 315 -50 774 194 0 0 chr15 46277508 46277637 -55102884 - FLAM_C SINE Alu -4 129 1 30 0 0 0 chr15 46277875 46277905 -55102616 + AT_rich Low_complexity Low_complexity 1 30 0 342 312 64 6 chr15 46278581 46278738 -55101783 + L1ME LINE L1 138 303 -5902 932 297 103 24 chr15 46279080 46280032 -55100489 + L1ME LINE L1 786 1812 -4584 860 270 97 33 chr15 46280221 46280783 -55099738 + L1ME LINE L1 2047 2603 -3612 1652 196 120 17 chr15 46280804 46281212 -55099309 + MLT2B1 LTR ERVL 1 450 -70 266 243 10 0 chr15 46281217 46281320 -55099201 + (TA)n Simple_repeat Simple_repeat 1 104 0 324 151 9 160 chr15 46281324 46281430 -55099091 - L1MC4 LINE L1 -1340 6702 6613 238 175 0 32 chr15 46281432 46281495 -55099026 + (TA)n Simple_repeat Simple_repeat 2 62 0 259 315 133 14 chr15 46281598 46281741 -55098780 + L3 LINE CR1 922 1081 -496 183 341 91 11 chr15 46281862 46281950 -55098571 - L2 LINE L2 -39 3233 3139 234 373 101 30 chr15 46282022 46282230 -55098291 + L3 LINE CR1 1186 1378 -199 1582 205 13 3 chr15 46282230 46282528 -55097993 + AluJo SINE Alu 8 308 -4 234 373 101 30 chr15 46282528 46282684 -55097837 + L3 LINE CR1 1378 1576 -1 201 330 146 15 chr15 46282730 46282991 -55097530 - L2 LINE L2 -1021 2293 1999 337 202 87 58 chr15 46284633 46284737 -55095784 - MIR SINE MIR -55 207 101 1953 149 26 0 chr15 46285029 46285331 -55095190 - AluJo SINE Alu 0 312 3 669 129 9 52 chr15 46285523 46285639 -55094882 - ORSL DNA AcHobo 0 275 165 560 186 10 0 chr15 46285785 46285887 -55094634 - ORSL DNA AcHobo -172 103 1 1739 186 0 3 chr15 46286110 46286416 -55094105 - AluJo SINE Alu -3 309 5 2179 83 33 20 chr15 46286597 46286897 -55093624 + AluSp SINE Alu 2 305 -8 205 200 0 0 chr15 46287730 46287770 -55092751 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 457 299 124 24 chr15 46287788 46288166 -55092355 + L1MC4 LINE L1 7459 7874 -168 13310 196 7 2 chr15 46288197 46290960 -55089561 + L1 LINE L1 2252 5028 -1118 1323 225 37 50 chr15 46291406 46291788 -55088733 + L1ME2 LINE L1 5779 6155 -9 29 0 0 0 chr15 46291789 46291818 -55088703 + AT_rich Low_complexity Low_complexity 1 29 0 278 295 19 29 chr15 46292191 46292296 -55088225 + MER5A DNA MER1_type 84 187 -2 206 287 16 107 chr15 46292193 46292315 -55088206 - MER5A DNA MER1_type -75 114 4 * 210 312 97 48 chr15 46293031 46293444 -55087077 + L2 LINE L2 2459 2891 -423 190 365 58 10 chr15 46295972 46296076 -55084445 + MIR SINE MIR 15 123 -139 189 302 63 0 chr15 46296193 46296256 -55084265 - L2 LINE L2 -1497 1817 1751 836 163 7 0 chr15 46296257 46296392 -55084129 + FLAM_C SINE Alu 1 136 -7 405 294 77 12 chr15 46296932 46297102 -55083419 + MIR SINE MIR 9 189 -73 195 162 0 0 chr15 46297874 46297911 -55082610 + (TG)n Simple_repeat Simple_repeat 2 38 0 2538 74 3 0 chr15 46297928 46298237 -55082284 + AluSp SINE Alu 1 310 -3 1850 104 21 11 chr15 46298492 46298771 -55081750 - L1PB1 LINE L1 0 6151 5870 236 285 7 51 chr15 46298813 46298950 -55081571 + CT-rich Low_complexity Low_complexity 2 132 0 294 354 73 17 chr15 46298980 46299158 -55081363 + MIR SINE MIR 60 247 -15 21 57 0 0 chr15 46299170 46299205 -55081316 + AT_rich Low_complexity Low_complexity 1 35 0 221 310 80 121 chr15 46299263 46299420 -55081101 - L2 LINE L2 -3 3269 3107 1710 151 31 57 chr15 46299420 46299738 -55080783 + AluJb SINE Alu 1 310 -2 221 310 80 121 chr15 46299738 46300044 -55080477 - L2 LINE L2 -165 3107 2825 422 298 8 8 chr15 46300103 46300227 -55080294 - MIR SINE MIR -23 239 116 884 163 0 0 chr15 46300507 46300648 -55079873 + FLAM_C SINE Alu 1 141 -2 214 271 110 127 chr15 46300662 46301072 -55079449 - L2 LINE L2 -825 2489 2087 217 234 78 47 chr15 46301112 46301176 -55079345 + L2 LINE L2 3247 3312 -1 36 40 0 0 chr15 46301241 46301291 -55079230 + AT_rich Low_complexity Low_complexity 1 50 0 2132 135 3 0 chr15 46301410 46301721 -55078800 - AluSx SINE Alu 0 312 1 3378 121 40 95 chr15 46301966 46302724 -55077797 + L1MA4 LINE L1 5585 6300 0 23 0 0 0 chr15 46304742 46304765 -55075756 + AT_rich Low_complexity Low_complexity 1 23 0 422 289 83 62 chr15 46304802 46305175 -55075346 + L1MC4a LINE L1 5439 5819 -1989 427 286 257 0 chr15 46305192 46305363 -55075158 + MIR SINE MIR 35 249 -13 269 243 10 48 chr15 46305365 46305468 -55075053 + L1MC4a LINE L1 5806 5904 -1904 22 0 0 0 chr15 46305478 46305500 -55075021 + AT_rich Low_complexity Low_complexity 1 22 0 399 182 215 66 chr15 46305508 46305629 -55074892 + L2 LINE L2 3173 3311 -2 1241 161 18 0 chr15 46305653 46305877 -55074644 + L1MB4 LINE L1 5935 6162 -18 199 307 50 79 chr15 46306634 46306735 -55073786 - L2 LINE L2 -43 3229 3132 21 57 0 0 chr15 46306818 46306853 -55073668 + AT_rich Low_complexity Low_complexity 1 35 0 191 111 0 28 chr15 46306890 46306926 -55073595 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 219 266 18 62 chr15 46307217 46307330 -55073191 + MIR SINE MIR 88 195 -67 1631 147 13 43 chr15 46307529 46308155 -55072366 + LTR8 LTR ERV1 1 689 -2 247 136 0 0 chr15 46308310 46308354 -55072167 - Charlie7 DNA MER1_type -2513 99 56 2315 134 35 7 chr15 46309948 46310373 -55070148 + LTR23 LTR ERV1 1 437 0 450 152 72 3 chr15 46310664 46310801 -55069720 + MER41C LTR ERV1 2 188 -366 450 130 0 0 chr15 46310801 46310870 -55069651 - MER41A LTR ERV1 0 554 486 * 1662 126 4 11 chr15 46310868 46311137 -55069384 - LTR39 LTR ERV1 -501 282 16 * 2938 152 71 63 chr15 46311115 46311765 -55068756 + LTR39 LTR ERV1 129 783 0 2362 86 0 32 chr15 46313161 46313475 -55067046 + AluSg SINE Alu 1 304 -6 1714 197 61 23 chr15 46313613 46314054 -55066467 - MLT1C LTR MaLR 0 467 10 1912 93 0 0 chr15 46314113 46314360 -55066161 + AluSc SINE Alu 63 309 0 301 303 113 44 chr15 46314481 46314755 -55065766 + L2 LINE L2 2931 3223 -49 * 375 281 16 87 chr15 46314748 46314878 -55065643 + MIR3 SINE MIR 25 140 -68 2222 104 3 7 chr15 46314878 46315185 -55065336 + AluY SINE Alu 1 306 -5 375 281 16 87 chr15 46315185 46315239 -55065282 + MIR3 SINE MIR 140 196 -12 2309 119 8 41 chr15 46315247 46315635 -55064886 - THE1C LTR MaLR 0 375 1 697 258 140 0 chr15 46315679 46315865 -55064656 - MIR SINE MIR -45 217 6 187 89 0 44 chr15 46316111 46316156 -55064365 + (TTATA)n Simple_repeat Simple_repeat 3 45 0 45 69 0 0 chr15 46316160 46316247 -55064274 + AT_rich Low_complexity Low_complexity 1 87 0 6491 63 4 1 chr15 46316665 46317503 -55063018 + L1PA7 LINE L1 5312 6151 -3 2044 137 10 51 chr15 46317515 46317682 -55062839 + L1MA9 LINE L1 5786 5958 -354 1888 139 0 50 chr15 46317682 46318005 -55062516 + AluJb SINE Alu 3 309 -3 2044 137 10 51 chr15 46318005 46318232 -55062289 + L1MA9 LINE L1 5958 6164 -148 782 159 23 0 chr15 46318237 46318369 -55062152 + AluJo SINE Alu 1 135 -177 906 102 13 19 chr15 46318373 46318530 -55061991 + L1MA9 LINE L1 6157 6312 0 22 0 0 0 chr15 46318603 46318625 -55061896 + AT_rich Low_complexity Low_complexity 1 22 0 221 355 64 63 chr15 46318761 46319241 -55061280 - L2 LINE L2 -219 3053 2377 572 249 72 28 chr15 46321094 46321275 -55059246 + MIR SINE MIR 9 197 -65 464 307 18 0 chr15 46322482 46322648 -55057873 + L1ME LINE L1 5523 5691 -430 1015 84 22 17 chr15 46322694 46322873 -55057648 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 5304 58 5 0 chr15 46323326 46324000 -55056521 + L1PA8 LINE L1 5496 6172 0 1401 141 12 28 chr15 46324307 46324562 -55055959 + L1PB3 LINE L1 5903 6153 -1 295 355 37 42 chr15 46325113 46325302 -55055219 + MER5A DNA MER1_type 1 188 -1 284 370 111 0 chr15 46325866 46326001 -55054520 - L2 LINE L2 -2 3270 3121 226 71 0 0 chr15 46326045 46326087 -55054434 - MER3 DNA MER1_type -29 180 139 302 125 0 0 chr15 46326096 46326144 -55054377 + L1MB7 LINE L1 6127 6174 -10 310 231 231 8 chr15 46326155 46326285 -55054236 - MER3 DNA MER1_type -50 159 1 247 296 95 39 chr15 46326306 46326485 -55054036 - L2 LINE L2 -187 3085 2897 428 240 34 29 chr15 46326673 46326848 -55053673 - L1ME3A LINE L1 -6 6164 5989 1903 241 65 20 chr15 46327554 46328065 -55052456 - MLT1F LTR MaLR -8 534 1 1631 144 11 58 chr15 46328482 46328663 -55051858 + MER65A LTR ERV1 115 274 -171 2318 98 0 0 chr15 46328663 46328959 -55051562 - AluSx SINE Alu -16 296 1 1631 144 11 58 chr15 46328959 46329124 -55051397 + MER65A LTR ERV1 274 445 0 195 162 0 0 chr15 46329190 46329227 -55051294 + (TTA)n Simple_repeat Simple_repeat 2 38 0 293 318 26 13 chr15 46329546 46329697 -55050824 - MER117 DNA MER1_type -44 153 1 185 189 0 0 chr15 46329710 46329747 -55050774 - MER5B DNA MER1_type -16 162 126 241 147 29 15 chr15 46329757 46329825 -55050696 + L1MC5 LINE L1 7682 7750 -211 2819 236 128 59 chr15 46329827 46330045 -55050476 - L1MC4 LINE L1 -150 7892 7690 1250 193 81 59 chr15 46330045 46330402 -55050119 - MLT1A1 LTR MaLR 0 365 1 2819 236 128 59 chr15 46330402 46331336 -55049185 - L1MC4 LINE L1 -352 7690 6822 2172 114 0 13 chr15 46331336 46331644 -55048877 - AluSx SINE Alu -8 304 1 2819 236 128 59 chr15 46331644 46331791 -55048730 - L1MC4 LINE L1 -1220 6822 6687 1764 133 48 79 chr15 46331791 46332145 -55048376 + MER61A LTR ERV1 1 343 0 2819 236 128 59 chr15 46332145 46332467 -55048054 - L1MC4 LINE L1 -1355 6687 6389 2147 108 3 3 chr15 46332467 46332763 -55047758 + AluSg SINE Alu 1 296 -14 2819 236 128 59 chr15 46332763 46332947 -55047574 - L1MC4 LINE L1 -1653 6389 5943 248 77 26 0 chr15 46333074 46333113 -55047408 + (GAAA)n Simple_repeat Simple_repeat 3 42 0 813 93 187 13 chr15 46334106 46334256 -55046265 + THE1C LTR MaLR 1 176 -199 1475 120 0 0 chr15 46334358 46334566 -55045955 - AluSc SINE Alu -101 208 1 7060 189 82 70 chr15 46334808 46335611 -55044910 - MER65-int LTR ERV1 -2363 2508 1716 1531 119 0 5 chr15 46335611 46335821 -55044700 - AluSg/x SINE Alu -19 293 85 7060 189 82 70 chr15 46335821 46336987 -55043534 - MER65-int LTR ERV1 -3155 1716 1295 585 92 0 0 chr15 46336987 46337085 -55043436 + (TA)n Simple_repeat Simple_repeat 2 99 0 7060 189 82 70 chr15 46337085 46338315 -55042206 - MER65-int LTR ERV1 -3576 1295 81 617 106 21 0 chr15 46338389 46338483 -55042038 - L1PB3 LINE L1 -1 6153 6058 21885 189 46 25 chr15 46338508 46338657 -55041864 - L1M4 LINE L1 -1459 6106 5962 11125 47 7 14 chr15 46338657 46340041 -55040480 + SVA Other Other 2 1376 -10 21885 189 46 25 chr15 46340041 46343430 -55037091 - L1M4 LINE L1 -1603 5962 2646 2662 52 0 0 chr15 46343430 46343739 -55036782 - AluY SINE Alu -2 309 1 21885 189 46 25 chr15 46343739 46345974 -55034547 - L1M4 LINE L1 -4919 2646 193 2121 131 0 19 chr15 46345974 46346286 -55034235 - AluSx SINE Alu -6 306 1 21885 189 46 25 chr15 46346286 46346474 -55034047 - L1M4 LINE L1 -7372 193 10 767 271 139 15 chr15 46346487 46346904 -55033617 + L1MCa LINE L1 949 1313 -5294 360 0 0 0 chr15 46346904 46346944 -55033577 + (CA)n Simple_repeat Simple_repeat 2 41 0 767 271 139 15 chr15 46346944 46347265 -55033256 + L1MCa LINE L1 1313 1983 -4624 1861 198 51 30 chr15 46348138 46348568 -55031953 - MLT1C LTR MaLR -2 465 17 407 309 8 24 chr15 46348606 46348729 -55031792 + MIR SINE MIR 25 145 -63 14871 199 43 22 chr15 46349129 46351569 -55028952 + L1PB1 LINE L1 27 2415 -4452 219 36 0 0 chr15 46351569 46351597 -55028924 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 14871 199 43 22 chr15 46351597 46353074 -55027447 + L1PB1 LINE L1 2415 3860 -3007 9683 50 4 144 chr15 46353074 46354662 -55025859 + SVA Other Other 20 1386 0 14871 199 43 22 chr15 46354662 46356934 -55023587 + L1PB1 LINE L1 3860 6505 -362 240 119 0 71 chr15 46357002 46357086 -55023435 + (TA)n Simple_repeat Simple_repeat 1 78 0 2313 142 8 6 chr15 46357099 46357465 -55023056 + L1PB1 LINE L1 6498 6864 -3 42 20 0 0 chr15 46357465 46357514 -55023007 + AT_rich Low_complexity Low_complexity 1 49 0 187 308 33 22 chr15 46358201 46358292 -55022229 - MIR SINE MIR -142 120 29 692 235 130 0 chr15 46358635 46358797 -55021724 + MER5A DNA MER1_type 1 183 -6 22 35 0 0 chr15 46359413 46359442 -55021079 + AT_rich Low_complexity Low_complexity 1 29 0 754 179 0 22 chr15 46359467 46359601 -55020920 - FLAM_A SINE Alu -1 132 2 466 45 0 15 chr15 46359688 46359754 -55020767 - L1MB3 LINE L1 -7 6176 6112 203 293 35 0 chr15 46360112 46360170 -55020351 + L2 LINE L2 3251 3310 -3 2175 154 28 6 chr15 46360481 46360838 -55019683 + MLT1A1 LTR MaLR 1 365 0 589 278 162 53 chr15 46360996 46361410 -55019111 + MLT1K LTR MaLR 108 566 -22 305 289 89 0 chr15 46364028 46364163 -55016358 - MIR SINE MIR -24 238 92 330 221 152 35 chr15 46364233 46364378 -55016143 + MIR3 SINE MIR 24 185 -23 2023 131 13 7 chr15 46364935 46365233 -55015288 - AluJb SINE Alu -12 300 1 226 222 48 16 chr15 46365285 46365348 -55015173 - MIR3 SINE MIR -26 182 118 2239 112 0 3 chr15 46365494 46365797 -55014724 + AluSx SINE Alu 1 302 -10 338 244 10 156 chr15 46366524 46366562 -55013959 - MER5A DNA MER1_type -11 178 136 2480 78 0 0 chr15 46366562 46366869 -55013652 - AluY SINE Alu -4 307 1 338 244 10 156 chr15 46366869 46366896 -55013625 - MER5A DNA MER1_type -53 136 107 2026 144 0 20 chr15 46366896 46367201 -55013320 + AluJb SINE Alu 1 299 -13 338 244 10 156 chr15 46367201 46367339 -55013182 - MER5A DNA MER1_type -82 107 4 1979 103 7 11 chr15 46367365 46367669 -55012852 - AluSc SINE Alu 0 303 1 261 298 0 48 chr15 46367671 46367775 -55012746 - MIR SINE MIR -63 145 47 204 140 40 80 chr15 46369560 46369610 -55010911 + L2 LINE L2 3255 3302 -11 2056 124 0 0 chr15 46369610 46369885 -55010636 + AluSx SINE Alu 1 275 -37 668 107 8 0 chr15 46369888 46370009 -55010512 + (TAGA)n Simple_repeat Simple_repeat 1 122 0 256 316 81 0 chr15 46372042 46372178 -55008343 + MIR SINE MIR 114 260 -2 989 225 142 56 chr15 46372205 46372600 -55007921 + LTR16A LTR ERVL 16 444 -6 2338 103 0 0 chr15 46372722 46373022 -55007499 + AluSx SINE Alu 9 308 -4 1464 98 13 60 chr15 46373471 46373705 -55006816 - AluJb SINE Alu -5 307 85 203 189 0 0 chr15 46373724 46373761 -55006760 + A-rich Low_complexity Low_complexity 1 37 0 481 314 69 48 chr15 46373951 46374384 -55006137 + L2 LINE L2 2828 3269 -3 1752 161 45 7 chr15 46374817 46375103 -55005418 + AluJo SINE Alu 2 298 -14 254 352 96 21 chr15 46375160 46375647 -55004874 - L2 LINE L2 -181 3091 2564 369 295 37 98 chr15 46375779 46376124 -55004397 + HAL1 LINE L1 2053 2362 -145 2324 69 0 75 chr15 46376124 46376458 -55004063 + AluY SINE Alu 1 309 -2 369 295 37 98 chr15 46376458 46376593 -55003928 + HAL1 LINE L1 2362 2504 -3 2316 51 4 0 chr15 46376742 46377017 -55003504 + AluY SINE Alu 30 305 -6 459 52 0 0 chr15 46377017 46377075 -55003446 + (TA)n Simple_repeat Simple_repeat 2 59 0 393 158 95 11 chr15 46377186 46377281 -55003240 + MER112 DNA MER1_type 1 103 -157 354 278 53 0 chr15 46377360 46377511 -55003010 - MIR SINE MIR -16 246 88 758 159 29 22 chr15 46378156 46378294 -55002227 + FLAM_C SINE Alu 2 140 -3 406 163 113 0 chr15 46379154 46379234 -55001287 - HsTC2 DNA Tc2 -3 1895 1807 387 286 88 0 chr15 46379284 46379476 -55001045 - MIR SINE MIR -30 232 24 23 0 0 0 chr15 46379680 46379703 -55000818 + AT_rich Low_complexity Low_complexity 1 23 0 2189 72 0 14 chr15 46380170 46380446 -55000075 + AluY SINE Alu 39 310 -1 1662 173 35 3 chr15 46380586 46380870 -54999651 + AluJo SINE Alu 1 293 -19 1418 199 48 17 chr15 46381086 46381402 -54999119 + AluJo SINE Alu 1 312 0 1163 275 60 63 chr15 46381655 46381942 -54998579 + L1MC4a LINE L1 5322 5609 -553 1685 146 35 4 chr15 46381942 46382202 -54998319 - AluJo SINE Alu -23 289 22 1163 275 60 63 chr15 46382202 46382497 -54998024 + L1MC4a LINE L1 5609 5544 -618 2492 77 0 0 chr15 46382497 46382794 -54997727 - AluY SINE Alu -14 297 1 1163 275 60 63 chr15 46382794 46382868 -54997653 + L1MC4a LINE L1 5543 5616 -546 1245 184 28 0 chr15 46383073 46383291 -54997230 + MER58A DNA MER1_type 1 224 0 1829 153 43 0 chr15 46383837 46383960 -54996561 + AluJo SINE Alu 1 117 -195 189 0 0 0 chr15 46383960 46383981 -54996540 + (TA)n Simple_repeat Simple_repeat 2 22 0 1829 153 43 0 chr15 46383981 46384139 -54996382 + AluJo SINE Alu 117 294 -18 234 192 0 0 chr15 46384537 46384589 -54995932 + (TA)n Simple_repeat Simple_repeat 2 53 0 1588 158 67 38 chr15 46384610 46384952 -54995569 + MLT1A1 LTR MaLR 1 352 -13 240 35 0 0 chr15 46384952 46384981 -54995540 + (CA)n Simple_repeat Simple_repeat 2 30 0 613 160 173 7 chr15 46384981 46385120 -54995401 + MER46B DNA MER2_type 15 57 -179 1702 157 37 8 chr15 46385122 46385390 -54995131 + AluSx SINE Alu 1 276 -36 2249 111 0 0 chr15 46385391 46385689 -54994832 + AluY SINE Alu 1 298 -13 442 172 20 0 chr15 46385710 46385809 -54994712 + (TA)n Simple_repeat Simple_repeat 2 102 0 216 62 42 21 chr15 46385829 46385877 -54994644 + (TA)n Simple_repeat Simple_repeat 2 50 0 23 0 0 0 chr15 46386068 46386091 -54994430 + AT_rich Low_complexity Low_complexity 1 23 0 870 215 27 32 chr15 46387031 46387250 -54993271 - MER20 DNA MER1_type -1 218 1 451 278 152 36 chr15 46387423 46387732 -54992789 + L2 LINE L2 2964 3308 -5 238 255 0 0 chr15 46388151 46388198 -54992323 + (CA)n Simple_repeat Simple_repeat 1 47 0 2138 136 0 0 chr15 46388449 46388758 -54991763 + AluSx SINE Alu 3 311 -1 498 250 157 23 chr15 46389284 46389500 -54991021 + MIR SINE MIR 17 261 -1 256 231 46 0 chr15 46389509 46389574 -54990947 + L2 LINE L2 3246 3313 0 189 204 23 23 chr15 46390151 46390195 -54990326 + L3 LINE CR1 1525 1568 -9 287 241 162 31 chr15 46390865 46391056 -54989465 + HAL1 LINE L1 154 369 -2138 14967 202 34 10 chr15 46391075 46392729 -54987792 + L1PB1 LINE L1 6 1619 -5248 2402 76 3 16 chr15 46392729 46393044 -54987477 + AluY SINE Alu 1 311 0 14967 202 34 10 chr15 46393044 46397545 -54982976 + L1PB1 LINE L1 1619 6506 -361 306 0 0 0 chr15 46397552 46397586 -54982935 + (TA)n Simple_repeat Simple_repeat 1 34 0 561 125 0 10 chr15 46397586 46397682 -54982839 - L1P LINE L1 -1403 4743 4649 264 165 41 8 chr15 46397682 46397803 -54982718 + (TA)n Simple_repeat Simple_repeat 2 126 0 2245 139 8 21 chr15 46397813 46398186 -54982335 + L1PB1 LINE L1 6498 6865 -2 2831 242 203 50 chr15 46398229 46398703 -54981818 + HAL1 LINE L1 418 818 -1689 2437 80 0 22 chr15 46398703 46399017 -54981504 + AluSg SINE Alu 1 307 -3 2831 242 203 50 chr15 46399017 46400336 -54980185 + HAL1 LINE L1 818 2485 -22 209 189 0 0 chr15 46400340 46400377 -54980144 + CT-rich Low_complexity Low_complexity 2 38 0 347 274 0 70 chr15 46400478 46400635 -54979886 + MIR SINE MIR 31 176 -86 204 299 82 21 chr15 46401275 46401372 -54979149 - L2 LINE L2 -33 3239 3137 369 225 67 8 chr15 46401654 46401774 -54978747 + MER94 DNA DNA 2 128 -6 1764 158 37 10 chr15 46401851 46402149 -54978372 + AluJo SINE Alu 1 306 -6 835 65 37 0 chr15 46402818 46402926 -54977595 + HY1 scRNA scRNA 1 112 0 31 0 0 0 chr15 46402932 46402963 -54977558 + AT_rich Low_complexity Low_complexity 1 31 0 287 262 10 29 chr15 46404445 46404548 -54975973 - MER5A DNA MER1_type -20 169 69 418 264 107 0 chr15 46404884 46405024 -54975497 + MIR SINE MIR 1 155 -107 2534 55 0 0 chr15 46405089 46405382 -54975139 + AluY SINE Alu 1 293 -18 1192 150 50 5 chr15 46405589 46405789 -54974732 - MER3 DNA MER1_type 0 209 1 1504 215 159 2 chr15 46406441 46406869 -54973652 + L1ME3 LINE L1 5667 6161 -1 2083 154 0 0 chr15 46407380 46407686 -54972835 + AluSx SINE Alu 1 306 -6 244 235 74 0 chr15 46407706 46407787 -54972734 + (TATATG)n Simple_repeat Simple_repeat 1 87 0 256 195 156 0 chr15 46408661 46408738 -54971783 + L2 LINE L2 3142 3230 -42 245 328 130 6 chr15 46408782 46408959 -54971562 + MIR3 SINE MIR 10 208 0 2330 114 3 0 chr15 46409026 46409334 -54971187 + AluSx SINE Alu 1 309 -3 232 309 25 25 chr15 46410484 46410565 -54969956 + MIR SINE MIR 27 107 -155 2409 86 0 3 chr15 46410885 46411188 -54969333 + AluSc SINE Alu 1 302 -7 2203 122 0 0 chr15 46411194 46411490 -54969031 + AluSx SINE Alu 3 298 -14 629 236 35 6 chr15 46411810 46411984 -54968537 + MER5A DNA MER1_type 2 180 -9 530 169 19 104 chr15 46411989 46412073 -54968448 + L1MB4 LINE L1 6040 6107 -73 2292 81 3 23 chr15 46412073 46412381 -54968140 - AluSq SINE Alu -10 303 2 530 169 19 104 chr15 46412381 46412450 -54968071 + L1MB4 LINE L1 6107 6180 0 311 265 148 49 chr15 46412486 46412648 -54967873 + MER5B DNA MER1_type 1 178 0 628 308 88 13 chr15 46412664 46412982 -54967539 + L3 LINE CR1 1232 1573 -4 1171 168 0 5 chr15 46413209 46413406 -54967115 + MER3 DNA MER1_type 14 209 0 931 263 12 8 chr15 46414375 46414626 -54965895 + MIR SINE MIR 8 259 -3 1795 160 0 33 chr15 46415095 46415237 -54965284 + AluJo SINE Alu 1 129 -183 2190 128 3 0 chr15 46415237 46415541 -54964980 + AluSx SINE Alu 1 305 -7 1795 160 0 33 chr15 46415541 46415698 -54964823 + AluJo SINE Alu 129 290 -22 536 247 51 0 chr15 46416532 46416690 -54963831 + L1MA8 LINE L1 6126 6291 0 2017 125 0 4 chr15 46417683 46417991 -54962530 + AluSg SINE Alu 1 307 0 264 315 11 11 chr15 46418017 46418106 -54962415 - MER102a DNA MER1_type -1 329 241 385 60 0 0 chr15 46418182 46418232 -54962289 + HY4 scRNA scRNA 23 72 -21 335 299 76 7 chr15 46418277 46418421 -54962100 - MER102a DNA MER1_type -172 158 5 912 143 0 0 chr15 46419973 46420106 -54960415 + FLAM_A SINE Alu 1 133 0 200 258 0 61 chr15 46420166 46420232 -54960289 - L2 LINE L2 0 3272 3211 372 178 14 0 chr15 46420268 46420341 -54960180 - MER5A DNA MER1_type -115 74 1 414 267 30 0 chr15 46420596 46420697 -54959824 - MIR3 SINE MIR -31 177 74 855 163 31 66 chr15 46420748 46420944 -54959577 + MER5A DNA MER1_type 1 189 0 833 203 11 11 chr15 46421070 46421247 -54959274 + MER5B DNA MER1_type 1 177 -1 1444 176 87 7 chr15 46421279 46421421 -54959100 + AluJo SINE Alu 1 130 -182 1676 178 39 4 chr15 46421421 46421702 -54958819 + AluJb SINE Alu 1 291 -21 1444 176 87 7 chr15 46421702 46421848 -54958673 + AluJo SINE Alu 130 312 0 3102 169 13 2 chr15 46421875 46422412 -54958109 + MER67A LTR ERV1 1 543 0 594 267 14 0 chr15 46424504 46424650 -54955871 + MER91A DNA MER1_type 49 196 0 983 138 25 0 chr15 46424797 46424956 -54955565 + L1MB4 LINE L1 6012 6174 -6 1817 159 3 34 chr15 46425220 46425540 -54954981 - AluJo SINE Alu -2 310 1 1541 116 0 58 chr15 46425625 46425866 -54954655 - 7SLRNA srpRNA srpRNA -93 227 1 817 205 115 0 chr15 46426108 46426308 -54954213 + MER58A DNA MER1_type 1 223 -1 288 53 0 0 chr15 46426324 46426362 -54954159 + (ATG)n Simple_repeat Simple_repeat 3 40 0 200 149 21 0 chr15 46426377 46426424 -54954097 + GA-rich Low_complexity Low_complexity 3 50 0 374 256 82 87 chr15 46426427 46426547 -54953974 - MIR SINE MIR -13 249 129 1806 176 13 3 chr15 46426547 46426849 -54953672 + AluJb SINE Alu 1 305 -7 374 256 82 87 chr15 46426849 46426923 -54953598 - MIR SINE MIR -133 129 56 2120 188 27 11 chr15 46427884 46428326 -54952195 + L1MA3 LINE L1 5853 6301 -4 201 328 33 0 chr15 46428586 46428647 -54951874 + L2 LINE L2 3170 3232 -40 399 226 9 13 chr15 46429685 46429791 -54950730 + MIR SINE MIR 4 109 -99 731 273 22 17 chr15 46431972 46432203 -54948318 - MIR SINE MIR -24 238 7 466 292 60 0 chr15 46432248 46432416 -54948105 - MIR SINE MIR -8 254 77 1256 120 0 0 chr15 46432620 46432795 -54947726 + AluSg/x SINE Alu 137 311 -1 746 259 88 4 chr15 46434720 46434948 -54945573 + MER112 DNA MER1_type 8 254 -6 351 0 0 0 chr15 46435673 46435712 -54944809 + (TC)n Simple_repeat Simple_repeat 2 40 0 204 97 0 0 chr15 46435711 46435742 -54944779 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 184 272 136 19 chr15 46436015 46436118 -54944403 + MIR SINE MIR 34 148 -60 198 135 0 0 chr15 46436443 46436461 -54944060 + (TAA)n Simple_repeat Simple_repeat 3 20 -19 1757 136 47 14 chr15 46436461 46436740 -54943781 + AluJo SINE Alu 1 288 -24 198 135 0 0 chr15 46436740 46436758 -54943763 + (TAA)n Simple_repeat Simple_repeat 19 39 0 320 267 40 0 chr15 46436817 46436918 -54943603 - MIR SINE MIR -79 183 79 * 488 287 33 25 chr15 46436913 46437100 -54943421 + MIR SINE MIR 10 191 -32 1914 154 10 0 chr15 46437327 46437620 -54942901 - AluJb SINE Alu -16 296 1 229 333 0 0 chr15 46437641 46437722 -54942799 - MIR SINE MIR -68 194 114 344 290 109 44 chr15 46439019 46439202 -54941319 + MIR SINE MIR 15 209 -53 2410 71 0 10 chr15 46439813 46440109 -54940412 + AluY SINE Alu 1 293 -18 304 287 160 13 chr15 46440886 46440956 -54939565 + MER69A DNA AcHobo 6 64 -2462 2152 121 0 3 chr15 46440956 46441254 -54939267 - AluSg SINE Alu -13 297 1 304 287 160 13 chr15 46441254 46441333 -54939188 + MER69A DNA AcHobo 64 177 0 206 156 219 0 chr15 46441334 46441398 -54939123 + MIR SINE MIR 107 184 -78 300 250 56 28 chr15 46441580 46441688 -54938833 - MIR SINE MIR -70 192 82 890 114 0 50 chr15 46442432 46442572 -54937949 + FLAM_C SINE Alu 1 133 0 2526 61 3 0 chr15 46442647 46442943 -54937578 - AluSp SINE Alu -16 297 1 520 233 5 45 chr15 46443155 46443325 -54937196 + MIR SINE MIR 2 160 -48 2063 81 4 0 chr15 46444454 46444713 -54935808 + AluY SINE Alu 1 260 -51 190 284 54 40 chr15 46445344 46445418 -54935103 + L2 LINE L2 3238 3312 -1 257 213 0 0 chr15 46446043 46446090 -54934431 + L2 LINE L2 3265 3311 -2 405 222 62 211 chr15 46447405 46447571 -54932950 + L2 LINE L2 2035 2224 -1090 2228 119 0 0 chr15 46447571 46447873 -54932648 - AluSx SINE Alu -10 302 1 405 222 62 211 chr15 46447873 46448414 -54932107 + L2 LINE L2 2224 2637 -677 795 173 45 6 chr15 46448414 46448570 -54931951 - LTR35 LTR ERV1 0 618 457 2635 182 62 11 chr15 46448621 46449231 -54931290 + L1MB8 LINE L1 5428 6068 -110 1024 120 0 0 chr15 46449232 46449431 -54931090 - AluSg/x SINE Alu 0 336 138 671 186 7 0 chr15 46449431 46449571 -54930950 + L1MB7 LINE L1 6044 6184 0 1809 117 68 31 chr15 46449697 46450049 -54930472 + L1MA4 LINE L1 5925 6289 -11 1621 190 6 49 chr15 46450079 46450405 -54930116 - AluJb SINE Alu 0 312 1 345 310 107 57 chr15 46450422 46450703 -54929818 - L1MEd LINE L1 -4921 1198 904 700 310 90 72 chr15 46450833 46451411 -54929110 + L1ME3 LINE L1 4475 5074 -1072 529 134 52 0 chr15 46451411 46451508 -54929013 + L1MA10 LINE L1 6226 6327 -7 700 310 90 72 chr15 46451508 46451739 -54928782 + L1ME3 LINE L1 5074 5299 -847 2076 119 0 20 chr15 46451741 46452043 -54928478 + AluJb SINE Alu 1 296 -16 502 231 249 37 chr15 46452052 46452377 -54928144 - L1MC4a LINE L1 -1828 5980 5587 475 314 61 33 chr15 46452402 46452647 -54927874 - MIR SINE MIR -9 253 2 2411 93 0 6 chr15 46453091 46453404 -54927117 + AluSq SINE Alu 1 311 -2 415 276 142 46 chr15 46453516 46453707 -54926814 + L1ME3 LINE L1 5260 5431 -731 2308 98 3 0 chr15 46453707 46454003 -54926518 - AluSp SINE Alu -16 297 1 415 276 142 46 chr15 46454003 46454441 -54926080 + L1ME3 LINE L1 5431 5949 -213 2119 105 7 0 chr15 46455049 46455334 -54925187 + AluSx SINE Alu 1 287 -25 490 184 0 0 chr15 46456356 46456443 -54924078 - Tigger5 DNA MER2_type 0 2323 2237 307 200 0 0 chr15 46456453 46456508 -54924013 - Tigger5 DNA MER2_type -2268 55 1 22 70 0 0 chr15 46456713 46456756 -54923765 + AT_rich Low_complexity Low_complexity 1 43 0 365 189 160 19 chr15 46456926 46457032 -54923489 - MER105 DNA DNA -83 121 1 265 246 56 0 chr15 46460158 46460256 -54920265 - MIR SINE MIR -69 139 72 1977 134 40 0 chr15 46461401 46461700 -54918821 + AluJb SINE Alu 1 311 -1 2399 84 0 0 chr15 46462146 46462442 -54918079 - AluY SINE Alu -15 296 1 879 152 36 12 chr15 46462549 46462714 -54917807 + MER58A DNA MER1_type 48 216 -8 702 182 0 16 chr15 46462750 46462871 -54917650 + AluJ SINE Alu 2 120 -192 539 179 0 0 chr15 46462863 46462947 -54917574 - AluS SINE Alu -228 84 1 * 1263 126 5 21 chr15 46462950 46463136 -54917385 + AluJ SINE Alu 105 288 -20 183 114 0 0 chr15 46463136 46463171 -54917350 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1671 172 44 27 chr15 46463210 46463507 -54917014 + AluJo SINE Alu 3 304 -8 2043 139 14 0 chr15 46463704 46463998 -54916523 + AluSx SINE Alu 1 298 -14 2197 103 27 3 chr15 46464451 46464743 -54915778 - AluSx SINE Alu -13 299 1 691 204 83 6 chr15 46464854 46465011 -54915510 - MER20 DNA MER1_type -4 215 47 253 302 219 0 chr15 46465236 46465332 -54915189 - L3 LINE CR1 -80 1497 1381 21 71 0 0 chr15 46465614 46465656 -54914865 + AT_rich Low_complexity Low_complexity 1 42 0 355 320 51 46 chr15 46466134 46466309 -54914212 - MIR SINE MIR -62 200 25 221 167 0 0 chr15 46466810 46466852 -54913669 - L2 LINE L2 0 3313 3272 25 31 0 0 chr15 46467330 46467362 -54913159 + AT_rich Low_complexity Low_complexity 1 32 0 340 229 125 42 chr15 46467418 46467658 -54912863 - L1MC4a LINE L1 -1773 6035 5776 1431 141 8 8 chr15 46467760 46468022 -54912499 - Tigger6 DNA MER2_type -1 1596 1335 1726 113 41 38 chr15 46468278 46468598 -54911923 + MLT1B LTR MaLR 1 321 -69 1816 166 7 20 chr15 46468976 46469277 -54911244 - AluJo SINE Alu -5 307 11 1234 194 0 5 chr15 46469756 46469972 -54910549 - AluJo SINE Alu -11 301 87 24 0 0 0 chr15 46470357 46470381 -54910140 + AT_rich Low_complexity Low_complexity 1 24 0 1739 181 13 19 chr15 46470692 46471001 -54909520 - AluJo SINE Alu -5 307 1 2065 141 0 3 chr15 46471239 46471537 -54908984 + AluSx SINE Alu 1 297 -15 475 194 194 24 chr15 46471878 46472089 -54908432 + L1ME3A LINE L1 5678 5924 -240 300 253 0 13 chr15 46472137 46472212 -54908309 + L1ME3A LINE L1 6089 6162 -8 696 264 91 46 chr15 46472212 46472254 -54908267 + L1MC4 LINE L1 6993 7032 -1010 2192 92 7 36 chr15 46472254 46472557 -54907964 - AluSg SINE Alu -16 294 1 696 264 91 46 chr15 46472557 46472581 -54907940 + L1MC4 LINE L1 7032 7053 -989 1953 150 7 0 chr15 46472581 46472867 -54907654 + AluJb SINE Alu 13 300 -12 696 264 91 46 chr15 46472867 46472984 -54907537 + L1MC4 LINE L1 7053 7163 -879 2225 58 69 3 chr15 46472984 46473275 -54907246 + AluY SINE Alu 1 310 -1 696 264 91 46 chr15 46473275 46473571 -54906950 + L1MC4 LINE L1 7163 7496 -546 427 289 75 36 chr15 46473575 46473769 -54906752 + L1MC4 LINE L1 7709 7921 -121 246 62 0 0 chr15 46473769 46473801 -54906720 + (TG)n Simple_repeat Simple_repeat 2 33 0 427 289 75 36 chr15 46473801 46473911 -54906610 + L1MC4 LINE L1 7921 8025 -17 2145 119 3 3 chr15 46475166 46475468 -54905053 + AluSc SINE Alu 1 302 -7 440 302 93 33 chr15 46476211 46476426 -54904095 + L2 LINE L2 2827 3054 -218 255 314 39 98 chr15 46477465 46477618 -54902903 + MIR SINE MIR 4 147 -115 2351 109 0 0 chr15 46477831 46478135 -54902386 - AluSx SINE Alu -4 308 5 2160 108 0 10 chr15 46478144 46478441 -54902080 - AluSg SINE Alu -15 295 2 292 98 0 158 chr15 46478460 46478491 -54902030 + HsTC2 DNA Tc2 231 243 -1655 2000 117 29 4 chr15 46478491 46478772 -54901749 + AluSg SINE Alu 1 288 -22 292 98 0 158 chr15 46478772 46478822 -54901699 + HsTC2 DNA Tc2 243 299 -1599 598 240 142 71 chr15 46478853 46479008 -54901513 + HsTC2 DNA Tc2 531 674 -1224 1839 183 20 0 chr15 46479008 46479314 -54901207 - AluJb SINE Alu 0 312 1 598 240 142 71 chr15 46479314 46479495 -54901026 + HsTC2 DNA Tc2 674 891 -1007 2168 138 3 0 chr15 46479599 46479910 -54900611 + AluSx SINE Alu 1 312 0 358 248 26 26 chr15 46479964 46480081 -54900440 + MIR SINE MIR 146 262 0 2333 79 3 0 chr15 46480336 46480627 -54899894 - AluSp SINE Alu -21 292 1 1719 175 37 14 chr15 46480738 46481035 -54899486 - AluJb SINE Alu -8 304 1 2339 108 0 6 chr15 46481359 46481673 -54898848 - AluSx SINE Alu 0 312 1 737 179 0 8 chr15 46482575 46482709 -54897812 + FLAM_A SINE Alu 1 133 0 22 35 0 0 chr15 46483188 46483217 -54897304 + AT_rich Low_complexity Low_complexity 1 29 0 2182 126 0 3 chr15 46483289 46483598 -54896923 + AluSx SINE Alu 1 308 -4 898 124 31 0 chr15 46484195 46484324 -54896197 + AluJb SINE Alu 1 133 -179 2359 95 13 0 chr15 46484330 46484635 -54895886 + AluSg SINE Alu 1 309 -1 2419 92 0 3 chr15 46485357 46485663 -54894858 + AluSx SINE Alu 1 305 -7 183 42 0 0 chr15 46486202 46486226 -54894295 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 212 59 29 0 chr15 46486248 46486282 -54894239 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 943 196 0 0 chr15 46486286 46486444 -54894077 - FAM SINE Alu -17 158 1 1046 180 28 0 chr15 46486712 46486890 -54893631 - AluJo SINE Alu -14 298 116 1745 171 20 0 chr15 46486899 46487197 -54893324 - AluJo SINE Alu -8 304 1 339 285 6 95 chr15 46487218 46487276 -54893245 - L1ME2 LINE L1 -83 6064 6002 2217 97 13 0 chr15 46487276 46487574 -54892947 + AluSq SINE Alu 1 302 -11 339 285 6 95 chr15 46487574 46487673 -54892848 - L1ME2 LINE L1 -145 6002 5921 1505 264 75 29 chr15 46487698 46488362 -54892159 - L1ME2 LINE L1 -219 5934 5240 1925 100 4 4 chr15 46488386 46488645 -54891876 + AluSg SINE Alu 37 295 -15 726 275 40 14 chr15 46488647 46488998 -54891523 - L1ME2 LINE L1 -4863 1256 971 484 316 58 11 chr15 46489075 46489265 -54891256 - L1ME2 LINE L1 -5401 718 520 593 205 0 79 chr15 46489711 46489901 -54890620 + L1MC5 LINE L1 7688 7862 -99 21 57 0 0 chr15 46489917 46489952 -54890569 + AT_rich Low_complexity Low_complexity 1 35 0 2227 121 0 0 chr15 46491015 46491321 -54889200 - AluSx SINE Alu -6 306 1 2001 135 10 0 chr15 46491625 46491921 -54888600 + AluSx SINE Alu 1 299 -13 1167 121 145 5 chr15 46492416 46492623 -54887898 + MER46A DNA MER2_type 1 236 0 894 138 0 0 chr15 46492991 46493121 -54887400 + AluSq/x SINE Alu 1 130 -182 281 70 47 0 chr15 46493121 46493164 -54887357 + Alu SINE Alu 249 293 -8 410 232 22 22 chr15 46493719 46493857 -54886664 - L1M4 LINE L1 -771 5375 5238 275 286 60 30 chr15 46494304 46494472 -54886049 + L1ME LINE L1 5524 5696 -425 253 0 0 0 chr15 46495099 46495127 -54885394 + (TTTA)n Simple_repeat Simple_repeat 2 176 0 2484 39 0 0 chr15 46495127 46495411 -54885110 - AluY SINE Alu -27 284 1 2262 237 126 16 chr15 46495449 46496060 -54884461 + MER20B DNA MER1_type 1 702 -81 1886 177 0 0 chr15 46496060 46496359 -54884162 - AluJb SINE Alu -12 300 2 2262 237 126 16 chr15 46496359 46496452 -54884069 + MER20B DNA MER1_type 702 783 0 1789 113 67 18 chr15 46496721 46497004 -54883517 + AluSx SINE Alu 1 297 -15 302 238 238 12 chr15 46497544 46497716 -54882805 + L1ME LINE L1 5595 5805 -316 501 191 153 25 chr15 46497721 46497962 -54882559 - L1MC5 LINE L1 -32 7929 7658 2332 91 3 28 chr15 46498042 46498361 -54882160 + AluSq SINE Alu 1 311 -2 24 53 0 0 chr15 46498451 46498489 -54882032 + AT_rich Low_complexity Low_complexity 1 38 0 2535 54 0 0 chr15 46498556 46498853 -54881668 + AluY SINE Alu 1 297 -14 1289 249 111 70 chr15 46499359 46500196 -54880325 + HAL1 LINE L1 1624 2494 -13 1515 163 16 8 chr15 46500213 46500471 -54880050 - L1PB4 LINE L1 -2 6154 5895 2234 88 0 7 chr15 46500484 46500791 -54879730 + AluSg SINE Alu 1 305 0 26 0 0 0 chr15 46500998 46501024 -54879497 + AT_rich Low_complexity Low_complexity 1 26 0 2301 101 0 0 chr15 46501092 46501388 -54879133 - AluSp SINE Alu -9 304 9 2441 150 65 96 chr15 46501473 46501994 -54878527 + MLT1D LTR MaLR 1 505 0 411 234 107 42 chr15 46502043 46502253 -54878268 - L1P3 LINE L1 -436 5736 5500 1243 114 0 0 chr15 46502481 46502647 -54877874 + AluSg/x SINE Alu 134 299 -13 1833 150 28 0 chr15 46503200 46503486 -54877035 + AluSx SINE Alu 1 294 -18 1004 162 50 0 chr15 46503492 46503671 -54876850 + MER33 DNA MER1_type 7 194 -130 1808 168 0 10 chr15 46503673 46503964 -54876557 + AluJb SINE Alu 1 288 -24 575 206 0 47 chr15 46504002 46504109 -54876412 + AluJo SINE Alu 126 227 -85 457 250 0 0 chr15 46504415 46504511 -54876010 + MIR SINE MIR 93 188 -74 1337 167 4 49 chr15 46504534 46504798 -54875723 + AluJo SINE Alu 29 280 -32 45 16 0 16 chr15 46504798 46504849 -54875672 + AT_rich Low_complexity Low_complexity 1 52 -10 1810 172 7 10 chr15 46504849 46505146 -54875375 + AluJb SINE Alu 1 296 -16 45 16 0 16 chr15 46505146 46505157 -54875364 + AT_rich Low_complexity Low_complexity 52 62 0 215 222 0 0 chr15 46505173 46505218 -54875303 + MIR SINE MIR 218 262 0 317 311 50 17 chr15 46505273 46505392 -54875129 - MIR SINE MIR -79 183 61 2475 78 0 7 chr15 46505469 46505775 -54874746 - AluSx SINE Alu -8 304 1 302 287 82 33 chr15 46506245 46506367 -54874154 + MIR SINE MIR 19 146 -62 2500 72 0 0 chr15 46506455 46506759 -54873762 - AluY SINE Alu -7 304 1 2243 107 17 0 chr15 46506832 46507131 -54873390 - AluSx SINE Alu -8 304 1 1580 184 6 44 chr15 46507161 46507305 -54873216 + AluJb SINE Alu 1 149 -163 2308 93 0 13 chr15 46507305 46507615 -54872906 + AluSx SINE Alu 1 306 -6 1580 184 6 44 chr15 46507615 46507791 -54872730 + AluJb SINE Alu 149 309 -3 235 314 0 0 chr15 46508415 46508466 -54872055 - L2 LINE L2 -88 3184 3134 1961 264 111 71 chr15 46509019 46510435 -54870086 - L1MC4a LINE L1 -393 7415 5927 1957 152 10 3 chr15 46510435 46510732 -54869789 - AluJb SINE Alu -13 299 1 1961 264 111 71 chr15 46510732 46510899 -54869622 - L1MC4a LINE L1 -1881 5927 5768 500 292 16 52 chr15 46511344 46511594 -54868927 - L2 LINE L2 -104 3209 2969 451 307 85 64 chr15 46511609 46511892 -54868629 + LTR67 LTR ERVL 12 300 -257 334 216 27 0 chr15 46511893 46511967 -54868554 + LTR67 LTR ERVL 478 553 -4 553 375 68 18 chr15 46512021 46512301 -54868220 - L2 LINE L2 -454 2860 2567 391 275 52 64 chr15 46512307 46512391 -54868130 - L1MEd LINE L1 -4123 2273 2189 2316 122 0 0 chr15 46512391 46512703 -54867818 - AluSx SINE Alu 0 312 1 391 275 52 64 chr15 46512703 46512851 -54867670 - L1MEd LINE L1 -4207 2189 2044 885 251 128 26 chr15 46512889 46513272 -54867249 + L1MC5 LINE L1 7492 7913 -48 494 175 84 84 chr15 46513612 46513712 -54866809 - MER3 DNA MER1_type -19 143 41 1287 173 30 133 chr15 46513712 46514042 -54866479 + AluJo SINE Alu 1 296 -6 494 175 84 84 chr15 46514042 46514084 -54866437 - MER3 DNA MER1_type -120 42 1 1065 269 80 53 chr15 46514098 46514275 -54866246 - L1MEd LINE L1 -755 1662 1491 2338 109 0 3 chr15 46514275 46514587 -54865934 + AluSq SINE Alu 1 311 -2 1065 269 80 53 chr15 46514587 46515026 -54865495 - L1MEd LINE L1 -926 1491 1065 1466 173 8 8 chr15 46515026 46515269 -54865252 - AluJb SINE Alu 0 312 70 1065 269 80 53 chr15 46515269 46515625 -54864896 - L1MEd LINE L1 -1352 1065 487 2339 102 3 0 chr15 46516145 46516449 -54864072 + AluSg SINE Alu 1 305 -5 1106 133 78 66 chr15 46516516 46516597 -54863924 + Tigger2 DNA MER2_type 1 80 -2638 2137 122 0 10 chr15 46516597 46516901 -54863620 + AluSx SINE Alu 1 301 -11 1106 133 78 66 chr15 46516901 46516942 -54863579 + Tigger2 DNA MER2_type 80 119 -2599 1562 154 82 43 chr15 46516942 46517221 -54863300 + AluJo SINE Alu 3 292 -10 1106 133 78 66 chr15 46517221 46517353 -54863168 + Tigger2 DNA MER2_type 119 259 -2459 232 200 0 0 chr15 46517380 46517425 -54863096 + Alu SINE Alu 176 220 -82 1085 157 0 0 chr15 46517426 46517585 -54862936 + AluJb SINE Alu 136 294 -18 522 83 0 0 chr15 46517586 46517658 -54862863 + (TA)n Simple_repeat Simple_repeat 1 72 0 1747 158 0 29 chr15 46518007 46518318 -54862203 + AluJb SINE Alu 1 302 -10 2330 106 0 0 chr15 46518565 46518868 -54861653 - AluSx SINE Alu -9 303 1 1773 140 15 0 chr15 46519033 46519298 -54861223 - AluJb SINE Alu -43 269 1 1762 146 32 65 chr15 46519417 46519549 -54860972 + AluSx SINE Alu 1 136 -176 1890 144 3 50 chr15 46519549 46519868 -54860653 + AluSx SINE Alu 1 304 -8 1762 146 32 65 chr15 46519868 46520044 -54860477 + AluSx SINE Alu 136 299 -13 1790 191 25 14 chr15 46520493 46520849 -54859672 + MLT1A1 LTR MaLR 6 365 0 446 203 62 31 chr15 46521091 46521219 -54859302 - L1MC4a LINE L1 -1888 5920 5789 350 258 33 17 chr15 46521215 46521335 -54859186 - L1P4 LINE L1 -725 5440 5319 * 27 62 0 0 chr15 46521511 46521559 -54858962 + AT_rich Low_complexity Low_complexity 1 48 0 2322 84 7 3 chr15 46521708 46522006 -54858515 + AluSp SINE Alu 1 299 -14 251 336 88 35 chr15 46522409 46522635 -54857886 + L2 LINE L2 2820 3057 -215 409 292 0 0 chr15 46523058 46523147 -54857374 - MER112 DNA MER1_type -1 259 171 2443 39 4 0 chr15 46523351 46523654 -54856867 - AluY SINE Alu 0 305 2 215 127 36 18 chr15 46523689 46523744 -54856777 + (CATCT)n Simple_repeat Simple_repeat 5 60 0 461 250 59 166 chr15 46523752 46524004 -54856517 + L2 LINE L2 2819 2990 -323 2282 90 0 3 chr15 46524004 46524293 -54856228 - AluSc SINE Alu -21 288 1 461 250 59 166 chr15 46524293 46524552 -54855969 + L2 LINE L2 2990 3275 -38 2185 98 10 0 chr15 46525029 46525324 -54855197 + AluSp SINE Alu 15 312 -1 206 135 27 0 chr15 46525486 46525523 -54854998 - L2 LINE L2 -1061 2253 2216 1281 151 49 18 chr15 46525808 46526033 -54854488 + AluJb SINE Alu 67 298 -14 2462 64 0 0 chr15 46526167 46526465 -54854056 - AluY SINE Alu -11 300 3 504 179 17 14 chr15 46526978 46527100 -54853421 - MLT1A1 LTR MaLR -1 380 267 311 136 0 17 chr15 46527048 46527107 -54853414 - FLAM_A SINE Alu 0 133 76 * 1399 181 38 41 chr15 46527110 46527247 -54853274 - MLT1A1 LTR MaLR -73 292 156 2223 101 0 7 chr15 46527247 46527544 -54852977 - AluSg SINE Alu -15 295 1 1399 181 38 41 chr15 46527544 46527699 -54852822 - MLT1A1 LTR MaLR -209 156 1 36 0 0 0 chr15 46527845 46527881 -54852640 + AT_rich Low_complexity Low_complexity 1 36 0 799 124 0 0 chr15 46527881 46527986 -54852535 - U6 snRNA snRNA -2 105 1 2005 129 45 0 chr15 46528230 46528516 -54852005 + AluSx SINE Alu 1 299 -13 1979 128 14 10 chr15 46528711 46529007 -54851514 - AluSx SINE Alu -15 297 1 2254 104 0 0 chr15 46529038 46529327 -54851194 + AluSc SINE Alu 1 289 -20 711 220 147 16 chr15 46529508 46529699 -54850822 + MER46C DNA MER2_type 12 227 -111 799 231 25 20 chr15 46529792 46529995 -54850526 - MIR SINE MIR -1 261 58 361 204 124 0 chr15 46530292 46530405 -54850116 - L1ME4a LINE L1 -21 6100 5974 307 217 133 56 chr15 46530446 46530626 -54849895 - L1ME4a LINE L1 -223 5898 5705 646 276 51 28 chr15 46530627 46530844 -54849677 + MIR SINE MIR 31 252 -10 750 282 165 12 chr15 46531091 46531431 -54849090 - L3 LINE CR1 -9 1568 1177 194 137 137 78 chr15 46531558 46531609 -54848912 + MER5A DNA MER1_type 130 183 -6 248 286 10 51 chr15 46531615 46531713 -54848808 - L3 LINE CR1 -464 1113 1020 1641 165 14 24 chr15 46531756 46532047 -54848474 + AluJb SINE Alu 5 292 -20 413 157 0 12 chr15 46532066 46532149 -54848372 + GA-rich Low_complexity Low_complexity 4 85 0 2207 113 0 3 chr15 46532793 46533093 -54847428 - AluSq SINE Alu -14 299 1 642 145 153 8 chr15 46533866 46533997 -54846524 + Charlie1b DNA MER1_type 130 279 -244 22 70 0 0 chr15 46535236 46535279 -54845242 + GC_rich Low_complexity Low_complexity 1 43 0 305 321 197 21 chr15 46537165 46537694 -54842827 - L2 LINE L2 -410 2904 2283 * 508 294 158 49 chr15 46537692 46537869 -54842652 - L2 LINE L2 -4 3309 3153 2034 112 18 0 chr15 46537869 46538155 -54842366 + AluSx SINE Alu 1 291 -21 508 294 158 49 chr15 46538155 46538406 -54842115 - L2 LINE L2 -160 3153 2834 2523 47 0 31 chr15 46538471 46538788 -54841733 + AluY SINE Alu 1 307 -4 234 295 221 0 chr15 46538798 46538920 -54841601 - L2 LINE L2 -727 2587 2439 1079 136 182 34 chr15 46538926 46539190 -54841331 - Charlie5 DNA MER1_type -74 2538 2236 268 246 97 18 chr15 46539191 46539305 -54841216 - Charlie5 DNA MER1_type -2489 123 1 253 324 47 41 chr15 46539308 46539478 -54841043 - L2 LINE L2 -449 2865 2695 725 189 120 47 chr15 46539575 46539759 -54840762 + MER5C DNA MER1_type 1 170 -154 2235 112 0 3 chr15 46539759 46540063 -54840458 - AluSc SINE Alu -6 303 1 2337 99 6 6 chr15 46540065 46540378 -54840143 - AluSp SINE Alu 0 313 1 725 189 120 47 chr15 46540378 46540423 -54840098 + MER5C DNA MER1_type 170 250 -74 727 286 33 6 chr15 46540596 46540817 -54839704 - MIR SINE MIR -1 261 36 1784 146 11 14 chr15 46541046 46541326 -54839195 - AluJb SINE Alu -33 279 1 876 199 51 93 chr15 46541368 46541434 -54839087 + L1ME LINE L1 5258 5325 -855 2232 116 7 0 chr15 46541434 46541735 -54838786 + AluSx SINE Alu 1 303 -9 876 199 51 93 chr15 46541735 46542042 -54838479 + L1ME LINE L1 5325 5604 -576 1306 163 218 23 chr15 46542175 46542482 -54838039 + MSTB1 LTR MaLR 1 367 -65 249 361 63 11 chr15 46543099 46543290 -54837231 - L2 LINE L2 -960 2354 2154 202 252 153 27 chr15 46543329 46543440 -54837081 - MIR SINE MIR -6 256 132 196 163 0 23 chr15 46543570 46543613 -54836908 - L2 LINE L2 -1356 1958 1917 600 208 33 33 chr15 46543736 46543847 -54836674 + MER113 DNA MER1_type? 192 302 -219 1751 180 3 3 chr15 46543847 46544142 -54836379 - AluJb SINE Alu -17 295 1 600 208 33 33 chr15 46544142 46544257 -54836264 + MER113 DNA MER1_type? 302 521 0 23 152 0 0 chr15 46545119 46545152 -54835369 + GC_rich Low_complexity Low_complexity 1 33 0 777 93 0 34 chr15 46545182 46545300 -54835221 - AluY SINE Alu -196 115 2 809 162 0 74 chr15 46545899 46546047 -54834474 + FLAM_C SINE Alu 2 138 -5 210 143 0 0 chr15 46546141 46546176 -54834345 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 269 250 23 0 chr15 46546176 46546264 -54834257 + L1MC4 LINE L1 6614 6703 -1339 1834 144 3 39 chr15 46546462 46546767 -54833754 - AluSx SINE Alu -18 294 1 1722 166 32 14 chr15 46547746 46548029 -54832492 - AluJb SINE Alu -24 288 1 856 182 182 84 chr15 46548218 46548526 -54831995 + MSTD LTR MaLR 28 396 0 186 43 0 0 chr15 46549196 46549219 -54831302 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 460 185 160 42 chr15 46549328 46549341 -54831180 - MER3 DNA MER1_type -29 133 123 2085 115 28 0 chr15 46549341 46549627 -54830894 + AluSx SINE Alu 1 294 -18 460 185 160 42 chr15 46549627 46549732 -54830789 - MER3 DNA MER1_type -39 123 1 180 97 0 0 chr15 46551704 46551735 -54828786 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 975 158 25 116 chr15 46552394 46552537 -54827984 + AluJo SINE Alu 1 107 -205 2236 103 3 28 chr15 46552537 46552857 -54827664 + AluSx SINE Alu 1 312 0 975 158 25 116 chr15 46552857 46552998 -54827523 + AluJo SINE Alu 107 259 -53 1160 190 87 30 chr15 46553077 46553377 -54827144 + L1M4 LINE L1 4918 5234 -912 621 239 8 0 chr15 46553393 46553510 -54827011 - FLAM_A SINE Alu -14 119 2 242 273 18 0 chr15 46553551 46553606 -54826915 + L2 LINE L2 3198 3253 -19 189 0 0 0 chr15 46554026 46554047 -54826474 + (TC)n Simple_repeat Simple_repeat 2 22 0 1045 95 89 68 chr15 46554212 46554271 -54826250 - L1PB1 LINE L1 0 6151 6095 2057 122 31 0 chr15 46554271 46554559 -54825962 - AluSx SINE Alu -15 297 1 1045 95 89 68 chr15 46554559 46554689 -54825832 - L1PB1 LINE L1 -56 6095 5958 1783 156 0 20 chr15 46554903 46555205 -54825316 - AluJb SINE Alu -12 300 5 276 185 0 37 chr15 46555218 46555272 -54825249 - FLAM SINE Alu -9 124 73 1918 167 62 0 chr15 46555348 46555671 -54824850 - MER2 DNA MER2_type -1 343 1 562 175 113 127 chr15 46555671 46555916 -54824605 + L1MB7 LINE L1 5922 6164 -20 2137 68 60 18 chr15 46555947 46556228 -54824293 - AluY SINE Alu -17 294 2 3360 134 47 2 chr15 46556262 46556791 -54823730 - L1MB2 LINE L1 -7 6164 5612 2209 111 0 0 chr15 46557599 46557897 -54822624 - AluY SINE Alu -13 298 1 284 295 0 60 chr15 46559231 46559414 -54821107 + T-rich Low_complexity Low_complexity 4 175 0 * 316 335 0 19 chr15 46559282 46559440 -54821081 + CT-rich Low_complexity Low_complexity 2 156 0 363 285 217 35 chr15 46560123 46560492 -54820029 + L2 LINE L2 2398 2833 -481 313 374 10 87 chr15 46560606 46560801 -54819720 + L2 LINE L2 3008 3187 -85 2171 121 3 7 chr15 46561113 46561420 -54819101 + AluJb SINE Alu 2 307 -5 209 336 142 26 chr15 46561630 46561980 -54818541 + L2 LINE L2 2698 3090 -182 2132 120 10 0 chr15 46562100 46562400 -54818121 - AluSx SINE Alu -9 303 1 2115 124 7 3 chr15 46563317 46563615 -54816906 - AluSx SINE Alu -13 299 1 1662 162 14 7 chr15 46564745 46565023 -54815498 - AluJb SINE Alu -32 280 1 370 269 108 54 chr15 46565064 46565231 -54815290 - L1ME LINE L1 -369 5752 5577 23 0 0 0 chr15 46565247 46565270 -54815251 + AT_rich Low_complexity Low_complexity 1 23 0 2365 73 0 3 chr15 46565270 46565557 -54814964 + AluSc SINE Alu 1 286 -23 248 289 16 58 chr15 46565557 46565678 -54814843 - AluJo/FLAM SINE Alu -170 132 17 1847 144 10 7 chr15 46566211 46566503 -54814018 + AluSq SINE Alu 1 293 -20 261 207 0 0 chr15 46566508 46566566 -54813955 + L1MC4 LINE L1 6646 6703 -1339 * 382 269 121 33 chr15 46566547 46566977 -54813544 - L1MC/D LINE L1 -500 5670 5189 2094 116 3 0 chr15 46566994 46567286 -54813235 - AluSq SINE Alu -20 293 1 291 335 48 5 chr15 46567348 46567554 -54812967 - L1MC/D LINE L1 -1092 5054 4840 283 205 0 77 chr15 46567555 46567633 -54812888 - MER116 DNA Mariner 0 80 9 266 207 62 0 chr15 46567730 46567802 -54812719 - L1ME LINE L1 -787 5546 5471 1290 184 86 8 chr15 46567810 46567930 -54812591 + AluJb SINE Alu 1 110 -202 180 0 0 0 chr15 46567930 46567950 -54812571 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1290 184 86 8 chr15 46567950 46568096 -54812425 + AluJb SINE Alu 110 288 -24 1119 134 0 6 chr15 46568105 46568264 -54812257 + AluSg/x SINE Alu 129 287 -21 183 42 0 0 chr15 46568264 46568288 -54812233 + (TTAAA)n Simple_repeat Simple_repeat 2 25 0 1805 143 13 29 chr15 46568315 46568630 -54811891 + AluJo SINE Alu 2 311 -1 1604 171 8 0 chr15 46568656 46568919 -54811602 - MER2 DNA MER2_type -80 265 1 2084 124 3 0 chr15 46569377 46569660 -54810861 - AluSp SINE Alu -29 284 1 2350 73 0 7 chr15 46569673 46569975 -54810546 - AluY SINE Alu -11 300 1 2307 97 0 0 chr15 46570088 46570386 -54810135 + AluSx SINE Alu 1 298 -14 861 219 142 5 chr15 46571081 46571300 -54809221 - MIR SINE MIR -6 256 8 2377 78 17 0 chr15 46571391 46571686 -54808835 + AluSx SINE Alu 1 300 -12 693 246 143 21 chr15 46571686 46572155 -54808366 + L2 LINE L2 2775 3305 -8 2247 100 3 3 chr15 46572156 46572457 -54808064 + AluSx SINE Alu 1 301 -11 377 271 63 5 chr15 46572903 46573110 -54807411 + MER113 DNA MER1_type? 1 219 -302 1461 237 46 20 chr15 46573113 46573506 -54807015 + L1ME3A LINE L1 5768 6170 0 1831 65 4 4 chr15 46573508 46573740 -54806781 + L1PA14 LINE L1 5928 6159 -2 2115 124 0 23 chr15 46573746 46574053 -54806468 + AluSx SINE Alu 1 300 -12 2168 126 0 3 chr15 46574053 46574408 -54806113 + AluSx SINE Alu 1 354 0 1840 179 3 3 chr15 46574432 46574733 -54805788 + AluJb SINE Alu 1 301 -11 790 217 145 4 chr15 46574773 46575008 -54805513 + MER113 DNA MER1_type? 250 517 -4 934 87 0 0 chr15 46575679 46575806 -54804715 - AluY SINE Alu -11 300 174 492 189 82 113 chr15 46576177 46576336 -54804185 + MER58B DNA MER1_type 182 335 -6 479 90 154 0 chr15 46576923 46577001 -54803520 - 5S rRNA rRNA -31 90 1 1860 145 14 3 chr15 46577134 46577416 -54803105 - AluJb SINE Alu -27 285 1 917 240 14 14 chr15 46577552 46577769 -54802752 - MIR SINE MIR -44 218 2 1825 147 23 42 chr15 46578168 46578351 -54802170 - AluJb SINE Alu -11 301 125 2192 116 3 0 chr15 46578351 46578645 -54801876 + AluSp SINE Alu 1 295 -18 1825 147 23 42 chr15 46578645 46578768 -54801753 - AluJb SINE Alu -187 125 1 2193 132 0 7 chr15 46579034 46579344 -54801177 + AluSx SINE Alu 1 308 -4 2506 80 0 0 chr15 46579345 46579646 -54800875 + AluSq SINE Alu 1 301 -12 210 315 14 0 chr15 46579785 46579858 -54800663 - MIR3 SINE MIR -30 178 105 2151 127 0 3 chr15 46580041 46580341 -54800180 - AluSx SINE Alu -13 299 1 626 266 86 26 chr15 46581337 46581798 -54798723 - L1ME LINE L1 -5511 559 2 2067 116 0 13 chr15 46581949 46582250 -54798271 + AluSg SINE Alu 1 297 -13 2189 126 7 0 chr15 46582263 46582573 -54797948 + AluSx SINE Alu 1 312 0 2242 115 0 7 chr15 46582934 46583238 -54797283 + AluSx SINE Alu 3 304 -8 2215 126 7 0 chr15 46583239 46583549 -54796972 + AluSx SINE Alu 1 312 0 1768 158 10 7 chr15 46583812 46584109 -54796412 - AluSx SINE Alu -14 298 1 732 200 0 0 chr15 46584371 46584491 -54796030 + AluJb SINE Alu 178 297 -15 312 126 207 11 chr15 46584491 46584578 -54795943 + L1ME LINE L1 1319 1422 -5108 1244 161 29 0 chr15 46584578 46584783 -54795738 + AluJo SINE Alu 84 294 -18 2150 123 3 13 chr15 46584815 46585124 -54795397 + AluSx SINE Alu 1 306 -6 206 62 31 0 chr15 46585157 46585189 -54795332 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 394 197 34 51 chr15 46585284 46585401 -54795120 + L1ME LINE L1 1806 1920 -4620 2099 121 10 7 chr15 46585406 46585712 -54794809 + AluSx SINE Alu 1 307 -5 908 181 165 42 chr15 46585712 46586021 -54794500 + L1ME LINE L1 2767 3113 -3427 905 216 114 13 chr15 46586189 46586425 -54794096 - MIR SINE MIR 0 262 3 1968 135 0 10 chr15 46587617 46587914 -54792607 - AluSx SINE Alu -18 294 1 2210 116 3 3 chr15 46588269 46588580 -54791941 + AluSp SINE Alu 1 311 -2 2076 79 10 14 chr15 46588849 46589140 -54791381 + AluY SINE Alu 5 294 -17 2264 81 0 17 chr15 46589328 46589623 -54790898 + AluY SINE Alu 1 290 -21 26 74 0 0 chr15 46589664 46589718 -54790803 + AT_rich Low_complexity Low_complexity 1 54 0 2025 114 7 10 chr15 46590525 46590824 -54789697 + AluSx SINE Alu 1 298 -14 1222 314 0 119 chr15 46591303 46591647 -54788874 + AluSq SINE Alu 1 303 0 1992 148 0 0 chr15 46591659 46591957 -54788564 + AluSx SINE Alu 1 298 -14 854 203 0 0 chr15 46592270 46592423 -54788098 + AluJb SINE Alu 137 289 -23 2294 93 0 23 chr15 46593326 46593628 -54786893 - AluSg SINE Alu -13 297 3 2494 85 0 0 chr15 46593630 46593936 -54786585 - AluSx SINE Alu -6 306 1 1773 175 0 7 chr15 46594144 46594441 -54786080 + AluJb SINE Alu 3 297 -15 2229 124 0 7 chr15 46594795 46595102 -54785419 + AluSx SINE Alu 1 305 -7 2267 112 0 0 chr15 46595418 46595722 -54784799 + AluSg SINE Alu 1 304 -6 1982 110 7 39 chr15 46595853 46596162 -54784359 + AluSg SINE Alu 1 299 -11 2014 106 19 53 chr15 46596416 46596738 -54783783 - AluSx SINE Alu 0 312 2 2289 102 10 0 chr15 46596926 46597230 -54783291 + AluSp SINE Alu 1 307 -6 3749 125 2 33 chr15 46597939 46598184 -54782337 + MER1A DNA MER1_type 1 252 -2448 2171 112 7 0 chr15 46598184 46598479 -54782042 - AluSq SINE Alu -16 297 1 3749 125 2 33 chr15 46598479 46598777 -54781744 + MER1A DNA MER1_type 252 527 0 1645 133 31 8 chr15 46599104 46599360 -54781161 - AluSx SINE Alu -16 296 35 2237 92 0 3 chr15 46599370 46599693 -54780828 - AluSq SINE Alu 0 322 1 1856 164 3 7 chr15 46600696 46600994 -54779527 - AluSx SINE Alu -15 297 1 21 0 0 0 chr15 46601176 46601197 -54779324 + AT_rich Low_complexity Low_complexity 1 21 0 1541 122 14 0 chr15 46602321 46602542 -54777979 + AluSg/x SINE Alu 83 306 -4 1196 108 12 0 chr15 46602542 46602708 -54777813 + AluSq SINE Alu 134 301 -12 183 383 41 20 chr15 46603159 46603355 -54777166 - L2 LINE L2 -672 2642 2443 1600 161 84 13 chr15 46603670 46603969 -54776552 + MER2 DNA MER2_type 2 321 -24 1984 137 0 14 chr15 46604287 46604572 -54775949 + AluSx SINE Alu 1 281 -31 204 40 0 0 chr15 46604575 46604600 -54775921 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1868 115 77 0 chr15 46604804 46605065 -54775456 + AluSx SINE Alu 1 281 -31 306 0 0 0 chr15 46605068 46605102 -54775419 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2503 70 0 0 chr15 46605302 46605603 -54774918 + AluY SINE Alu 1 301 -10 395 345 58 54 chr15 46605910 46606133 -54774388 + L2 LINE L2 3023 3246 -26 1760 160 0 47 chr15 46609416 46609716 -54770805 + AluJb SINE Alu 1 286 -26 1560 224 43 0 chr15 46609990 46610316 -54770205 + MER58B DNA MER1_type 2 341 0 1927 85 8 15 chr15 46610351 46610610 -54769911 - AluY SINE Alu -19 292 36 2205 115 0 3 chr15 46610612 46610908 -54769613 - AluSx SINE Alu -17 295 1 670 250 0 0 chr15 46610910 46611034 -54769487 - FLAM_A SINE Alu -8 125 2 256 217 17 17 chr15 46611090 46611150 -54769371 + MIR SINE MIR 84 143 -119 1960 112 12 0 chr15 46611305 46611563 -54768958 + AluSx SINE Alu 2 262 -50 1552 293 110 24 chr15 46611586 46612179 -54768342 + L1MEd LINE L1 177 820 -5299 1144 157 5 81 chr15 46612617 46612735 -54767786 - MER2 DNA MER2_type -139 206 111 1759 177 10 3 chr15 46612735 46613034 -54767487 + AluJb SINE Alu 1 301 -11 1144 157 5 81 chr15 46613034 46613138 -54767383 - MER2 DNA MER2_type -234 111 1 553 275 140 24 chr15 46613141 46613190 -54767331 + L1MEd LINE L1 996 1038 -1452 2235 111 0 13 chr15 46613190 46613497 -54767024 + AluSg SINE Alu 1 303 -7 553 275 140 24 chr15 46613497 46613968 -54766553 + L1MEd LINE L1 1038 1627 -863 1901 143 10 14 chr15 46614169 46614462 -54766059 + AluJo SINE Alu 1 292 -20 1736 119 61 73 chr15 46614696 46615039 -54765482 + MER1B DNA MER1_type 1 339 0 856 66 0 0 chr15 46615318 46615424 -54765097 + AluY SINE Alu 206 311 0 2135 136 0 0 chr15 46615437 46615745 -54764776 + AluSx SINE Alu 1 308 -4 555 128 81 0 chr15 46615788 46615874 -54764647 - MER46A DNA MER2_type -143 93 1 314 295 171 12 chr15 46615887 46616138 -54764383 + L1ME3 LINE L1 2546 2836 -3546 2326 92 0 3 chr15 46616225 46616531 -54763990 + AluSg SINE Alu 1 305 -5 322 183 166 35 chr15 46616554 46616723 -54763798 + L1ME3 LINE L1 3025 3215 -3167 347 293 68 54 chr15 46616921 46617152 -54763369 + L1ME3 LINE L1 3231 3457 -2925 1714 151 7 47 chr15 46617152 46617289 -54763232 + AluJb SINE Alu 1 142 -170 2636 45 3 0 chr15 46617289 46617597 -54762924 + AluY SINE Alu 1 309 -2 1714 151 7 47 chr15 46617597 46617758 -54762763 + AluJb SINE Alu 142 287 -25 347 293 68 54 chr15 46617758 46617806 -54762715 + L1ME3 LINE L1 3457 3503 -2879 2257 64 14 4 chr15 46617806 46618115 -54762406 + AluY SINE Alu 1 312 0 347 293 68 54 chr15 46618115 46618317 -54762204 + L1ME3 LINE L1 3503 3721 -2661 35 41 0 0 chr15 46618459 46618508 -54762013 + AT_rich Low_complexity Low_complexity 1 49 0 309 260 146 7 chr15 46618614 46618819 -54761702 + L1ME3 LINE L1 5152 5397 -985 2550 46 0 7 chr15 46619207 46619514 -54761007 - AluY SINE Alu -6 305 1 3679 147 29 78 chr15 46619594 46620151 -54760370 + L1MB7 LINE L1 5378 5961 -223 1691 166 13 10 chr15 46620151 46620452 -54760069 + AluJb SINE Alu 1 302 -10 3679 147 29 78 chr15 46620452 46620501 -54760020 + L1MB7 LINE L1 5961 6011 -173 1847 127 76 0 chr15 46620501 46620776 -54759745 + AluSx SINE Alu 1 296 -16 3679 147 29 78 chr15 46620776 46620942 -54759579 + L1MB7 LINE L1 6011 6111 -73 2150 114 6 19 chr15 46620942 46621258 -54759263 + AluSx SINE Alu 1 312 0 3679 147 29 78 chr15 46621258 46621307 -54759214 + L1MB7 LINE L1 6111 6161 -23 252 173 101 59 chr15 46621353 46621500 -54759021 + L1ME3 LINE L1 5438 5596 -797 503 274 139 20 chr15 46621596 46621841 -54758680 + L1ME3 LINE L1 5831 6104 -294 649 147 138 0 chr15 46621855 46621971 -54758550 + FLAM_C SINE Alu 2 133 0 2842 228 68 22 chr15 46622019 46622842 -54757679 + L1ME3A LINE L1 5262 6160 -10 1373 198 10 32 chr15 46622852 46622972 -54757549 + AluJb SINE Alu 1 122 -190 2210 89 10 7 chr15 46622972 46623264 -54757257 - AluSc SINE Alu -16 293 1 1373 198 10 32 chr15 46623264 46623451 -54757070 + AluJb SINE Alu 122 301 -11 454 228 68 117 chr15 46623470 46623673 -54756848 + L1M4 LINE L1 3440 3626 -2520 2277 82 0 0 chr15 46623673 46623976 -54756545 - AluSx SINE Alu 0 305 3 454 228 68 117 chr15 46623976 46624078 -54756443 + L1M4 LINE L1 3626 3731 -2415 246 62 0 0 chr15 46624078 46624110 -54756411 + (TA)n Simple_repeat Simple_repeat 2 33 0 277 239 64 45 chr15 46624227 46624399 -54756122 + L1MC/D LINE L1 5659 5835 -335 633 229 149 16 chr15 46624419 46624734 -54755787 + L1M4c LINE L1 2041 2397 -3987 189 0 0 0 chr15 46624735 46624756 -54755765 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2069 96 3 58 chr15 46624757 46625069 -54755452 + AluSg SINE Alu 2 296 -14 3106 216 41 35 chr15 46625072 46625186 -54755335 + L1M4c LINE L1 2449 2561 -3821 216 0 0 0 chr15 46625186 46625210 -54755311 + (TA)n Simple_repeat Simple_repeat 1 24 0 3106 216 41 35 chr15 46625210 46625625 -54754896 + L1M4c LINE L1 2561 2972 -3410 2191 125 0 3 chr15 46625625 46625922 -54754599 + AluSq SINE Alu 1 296 -17 3106 216 41 35 chr15 46625922 46626151 -54754370 + L1M4c LINE L1 2972 3216 -3166 1558 183 74 0 chr15 46626151 46626436 -54754085 - AluJb SINE Alu -6 306 1 3106 216 41 35 chr15 46626436 46626499 -54754022 + L1M4c LINE L1 3216 3277 -3105 * 3692 124 23 69 chr15 46626487 46626646 -54753875 + L1MA4 LINE L1 4697 4862 -1441 2299 73 40 10 chr15 46626646 46626947 -54753574 - AluY SINE Alu -1 310 1 3692 124 23 69 chr15 46626947 46627441 -54753080 + L1MA4 LINE L1 4862 5377 -926 2006 145 0 0 chr15 46627441 46627730 -54752791 + AluSx SINE Alu 1 289 -23 3692 124 23 69 chr15 46627730 46627869 -54752652 + L1MA4 LINE L1 5377 5430 -873 2368 58 0 10 chr15 46627869 46628164 -54752357 + AluY SINE Alu 1 292 -19 3692 124 23 69 chr15 46628164 46628345 -54752176 + L1MA4 LINE L1 5430 5618 -685 681 103 37 9 chr15 46628446 46628553 -54751968 + L1MA4 LINE L1 5623 5732 -571 1397 181 0 30 chr15 46628570 46628840 -54751681 + AluJo SINE Alu 15 276 -36 2012 136 7 3 chr15 46628840 46629134 -54751387 - AluJb SINE Alu -17 295 1 2641 127 58 62 chr15 46629168 46629574 -54750947 + L1MA4 LINE L1 5796 6201 -99 2089 133 3 0 chr15 46629574 46629876 -54750645 - AluSq SINE Alu -10 303 1 2641 127 58 62 chr15 46629876 46629973 -54750548 + L1MA4 LINE L1 6201 6297 -3 1688 166 93 2 chr15 46629979 46630215 -54750306 + L1M4c LINE L1 3264 3477 -2905 2060 148 0 3 chr15 46630215 46630518 -54750003 + AluSx SINE Alu 1 302 -10 1688 166 93 2 chr15 46630518 46630679 -54749842 + L1M4c LINE L1 3477 3697 -2685 816 173 8 0 chr15 46630679 46630806 -54749715 + AluJo SINE Alu 2 129 -183 2160 87 31 3 chr15 46631787 46632075 -54748446 - AluSx SINE Alu -16 296 1 234 273 18 0 chr15 46632158 46632213 -54748308 - L2 LINE L2 -19 3253 3198 561 219 130 47 chr15 46632217 46632409 -54748112 - MER112 DNA MER1_type -48 212 5 384 237 0 0 chr15 46632420 46632496 -54748025 + MER5C DNA MER1_type 1 76 -248 582 163 0 0 chr15 46632585 46632671 -54747850 + AluJb SINE Alu 3 88 -224 365 203 0 0 chr15 46632766 46632825 -54747696 + AluJo SINE Alu 115 173 -129 2206 107 3 0 chr15 46633079 46633369 -54747152 + AluSq SINE Alu 1 291 -22 255 79 0 0 chr15 46633845 46633883 -54746638 + (CA)n Simple_repeat Simple_repeat 2 39 0 1166 177 22 53 chr15 46633963 46634189 -54746332 - MER20 DNA MER1_type 0 219 1 1005 162 35 61 chr15 46634416 46634613 -54745908 + AluJb SINE Alu 90 281 -31 856 146 0 0 chr15 46634675 46634805 -54745716 - AluSg/x SINE Alu -16 296 167 504 239 0 44 chr15 46635212 46635325 -54745196 + MER5B DNA MER1_type 4 111 -67 832 167 0 35 chr15 46635338 46635482 -54745039 - FLAM_C SINE Alu -3 140 2 254 200 17 33 chr15 46635485 46635545 -54744976 - MER5B DNA MER1_type -116 62 4 3445 173 67 72 chr15 46635861 46636597 -54743924 + MER44D DNA MER2_type 2 605 0 2017 126 7 3 chr15 46636619 46636920 -54743601 + AluSx SINE Alu 1 302 -10 1083 145 0 24 chr15 46637010 46637176 -54743345 + AluJb SINE Alu 133 294 -18 2203 107 13 0 chr15 46637177 46637477 -54743044 + AluSx SINE Alu 1 304 -8 217 289 6 121 chr15 46637580 46637746 -54742775 + MIR SINE MIR 70 216 -46 2019 113 58 0 chr15 46637800 46638092 -54742429 + AluSc SINE Alu 1 309 0 929 268 137 33 chr15 46638186 46638671 -54741850 + MLT1H1 LTR MaLR 14 555 0 2308 93 7 0 chr15 46638895 46639195 -54741326 - AluSq SINE Alu -11 302 1 200 267 100 0 chr15 46639847 46639907 -54740614 - MIR SINE MIR -95 113 48 2137 92 0 7 chr15 46641127 46641408 -54739113 + AluSg SINE Alu 1 279 -31 779 57 105 0 chr15 46641652 46641757 -54738764 + L1PB2 LINE L1 6034 6149 -2 794 136 30 15 chr15 46641816 46641948 -54738573 + AluJo SINE Alu 2 135 -177 2224 99 3 0 chr15 46641957 46642249 -54738272 + AluSx SINE Alu 1 293 -19 190 107 0 0 chr15 46642391 46642419 -54738102 - MIR SINE MIR -151 57 30 2504 61 0 0 chr15 46642534 46642830 -54737691 + AluY SINE Alu 1 296 -15 189 0 0 0 chr15 46643183 46643204 -54737317 + (TA)n Simple_repeat Simple_repeat 2 22 0 1704 163 0 20 chr15 46643592 46643887 -54736634 + AluJo SINE Alu 1 289 -23 24 32 0 0 chr15 46644254 46644285 -54736236 + AT_rich Low_complexity Low_complexity 1 31 0 640 213 37 0 chr15 46644647 46644783 -54735738 - MER3 DNA MER1_type -68 141 1 573 189 133 66 chr15 46645017 46645213 -54735308 - L2 LINE L2 -1 3312 3104 1849 163 3 17 chr15 46645233 46645563 -54734958 - AluJb SINE Alu 0 312 1 225 0 0 0 chr15 46645572 46645597 -54734924 + (TG)n Simple_repeat Simple_repeat 2 26 0 205 162 95 95 chr15 46645784 46645858 -54734663 + MIR SINE MIR 114 187 -75 614 252 30 88 chr15 46647131 46647211 -54733310 - MER93a LTR ERV1 -20 382 299 1793 175 10 23 chr15 46647211 46647520 -54733001 + AluJb SINE Alu 1 305 -7 614 252 30 88 chr15 46647520 46647701 -54732820 - MER93a LTR ERV1 -103 299 136 321 26 0 0 chr15 46647738 46647776 -54732745 + (TG)n Simple_repeat Simple_repeat 2 39 0 234 91 0 0 chr15 46648142 46648175 -54732346 + (T)n Simple_repeat Simple_repeat 1 33 0 1365 151 50 0 chr15 46648560 46648779 -54731742 - AluSx SINE Alu -82 230 1 740 221 7 0 chr15 46648811 46648960 -54731561 - FRAM SINE Alu -18 158 9 180 0 0 0 chr15 46648978 46648998 -54731523 + (T)n Simple_repeat Simple_repeat 1 20 0 350 327 0 9 chr15 46649244 46649354 -54731167 - MER93a LTR ERV1 -293 109 1 2109 111 4 0 chr15 46649569 46649882 -54730639 - AluSx SINE Alu 0 316 3 1701 156 20 43 chr15 46649896 46650198 -54730323 - AluJo SINE Alu -9 303 9 2206 119 0 10 chr15 46650208 46650518 -54730003 - AluSx SINE Alu -5 307 1 2272 118 0 3 chr15 46650961 46651274 -54729247 - AluSx SINE Alu 0 312 1 2310 103 17 29 chr15 46651297 46651647 -54728874 + L1PB2 LINE L1 5804 6149 -2 1495 214 0 22 chr15 46651905 46652218 -54728303 + AluJo SINE Alu 1 306 -6 2318 71 54 0 chr15 46652688 46652982 -54727539 - AluSp SINE Alu -3 310 1 2104 140 0 0 chr15 46653197 46653490 -54727031 - AluSx SINE Alu -19 293 1 323 163 0 0 chr15 46654832 46654881 -54725640 + FLAM SINE Alu 61 109 -24 258 32 0 0 chr15 46654888 46654919 -54725602 + (GAAAA)n Simple_repeat Simple_repeat 1 31 0 2571 65 0 7 chr15 46655408 46655716 -54724805 - AluY SINE Alu -5 306 1 2118 129 0 0 chr15 46655716 46656010 -54724511 - AluJb SINE Alu -18 294 1 1939 96 74 0 chr15 46656123 46656393 -54724128 - AluSc SINE Alu -19 290 1 2334 75 3 3 chr15 46657609 46657902 -54722619 + AluSc SINE Alu 1 293 -16 862 258 5 14 chr15 46658687 46658908 -54721613 + MIR SINE MIR 1 219 -43 738 308 40 73 chr15 46659068 46659415 -54721106 - L2 LINE L2 -455 2859 2539 2262 94 0 3 chr15 46659415 46659701 -54720820 - AluSg SINE Alu -24 286 2 738 308 40 73 chr15 46659701 46659957 -54720564 - L2 LINE L2 -775 2539 2276 2254 116 3 0 chr15 46660055 46660358 -54720163 + AluSp SINE Alu 1 304 -9 2528 61 0 0 chr15 46660526 46660823 -54719698 + AluY SINE Alu 1 297 -14 2272 111 0 3 chr15 46661283 46661590 -54718931 + AluSq SINE Alu 1 306 -7 262 270 54 0 chr15 46661590 46661664 -54718857 - L1MC5 LINE L1 -54 7907 7830 493 372 21 5 chr15 46661806 46661997 -54718524 - MER91A DNA MER1_type -2 194 1 238 237 212 8 chr15 46661997 46662115 -54718406 - L1ME4a LINE L1 -140 5981 5840 2076 114 30 3 chr15 46662576 46662875 -54717646 + AluSq SINE Alu 1 307 -6 2189 108 14 0 chr15 46662876 46663173 -54717348 + AluSc SINE Alu 1 301 -8 213 39 0 0 chr15 46663330 46663356 -54717165 + (T)n Simple_repeat Simple_repeat 1 26 0 1728 79 19 0 chr15 46663372 46663588 -54716933 - AluY SINE Alu -91 220 1 1626 199 16 48 chr15 46663710 46664087 -54716434 - MLT1A1 LTR MaLR 0 365 1 1243 92 92 6 chr15 46664142 46664316 -54716205 + AluSx SINE Alu 1 189 -123 2358 81 0 0 chr15 46664328 46664613 -54715908 - AluSc SINE Alu -24 285 1 392 160 40 0 chr15 46664672 46664747 -54715774 + MER116 DNA Mariner 1 78 -2 1989 144 3 10 chr15 46664894 46665199 -54715322 - AluSx SINE Alu -9 303 1 207 0 0 0 chr15 46665654 46665677 -54714844 + (TA)n Simple_repeat Simple_repeat 1 23 0 2265 113 0 3 chr15 46665677 46665979 -54714542 - AluSx SINE Alu -11 301 1 837 127 0 0 chr15 46666000 46666118 -54714403 - FLAM_C SINE Alu -25 118 1 338 295 0 0 chr15 46666663 46666741 -54713780 - Zaphod DNA AcHobo 0 4031 3954 2075 132 0 16 chr15 46666781 46667085 -54713436 - AluSx SINE Alu -13 299 1 1257 205 28 64 chr15 46667085 46667144 -54713377 - Zaphod DNA AcHobo -60 3971 3911 2515 58 0 3 chr15 46667144 46667439 -54713082 - AluY SINE Alu -17 294 1 1257 205 28 64 chr15 46667439 46667504 -54713017 - Zaphod DNA AcHobo -120 3911 3845 2119 119 3 22 chr15 46667504 46667816 -54712705 + AluSx SINE Alu 1 306 -6 1257 205 28 64 chr15 46667816 46668081 -54712440 - Zaphod DNA AcHobo -186 3845 3595 2398 72 0 7 chr15 46668106 46668410 -54712111 + AluY SINE Alu 1 302 -9 1019 206 57 24 chr15 46668455 46668702 -54711819 + MER50 LTR ERV1 10 264 -470 2315 78 7 7 chr15 46668702 46669050 -54711471 + AluSq SINE Alu 1 313 0 364 176 55 44 chr15 46669054 46669134 -54711387 + MER50 LTR ERV1 489 572 -162 1863 109 102 11 chr15 46669134 46669418 -54711103 - AluSq SINE Alu -3 310 1 628 119 88 126 chr15 46669436 46669552 -54710969 + MER46A DNA MER2_type 83 193 -2538 2091 97 4 7 chr15 46669552 46669830 -54710691 - AluSq SINE Alu -17 296 20 628 119 88 126 chr15 46669830 46669872 -54710649 + MER46A DNA MER2_type 193 235 -1 333 307 11 0 chr15 46669873 46669961 -54710560 - Charlie1 DNA MER1_type -2672 89 1 2091 121 0 0 chr15 46669974 46670247 -54710274 - AluSx SINE Alu -24 288 16 2256 48 0 8 chr15 46670423 46670691 -54709830 + AluY SINE Alu 37 302 -9 357 267 0 0 chr15 46670694 46670784 -54709737 - L1MC4 LINE L1 -1339 6703 6614 307 267 47 0 chr15 46670732 46670818 -54709703 + L1MC4 LINE L1 6614 6703 -1339 * 558 138 153 43 chr15 46670818 46671072 -54709449 + Zaphod DNA AcHobo 684 965 -3066 531 147 128 29 chr15 46671072 46671174 -54709347 - FLAM_A SINE Alu -10 132 21 1046 105 46 0 chr15 46671174 46671327 -54709194 - MER50 LTR ERV1 -9 725 566 2053 88 39 59 chr15 46671327 46671633 -54708888 + AluSx SINE Alu 1 300 -12 2242 96 0 0 chr15 46671633 46671913 -54708608 + AluSx SINE Alu 1 280 -32 225 0 0 0 chr15 46671913 46671938 -54708583 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 816 133 126 0 chr15 46671938 46672081 -54708440 + Charlie1b DNA MER1_type 135 295 -228 * 946 189 97 0 chr15 46672074 46672249 -54708272 - MER21B LTR ERV1 -364 499 308 827 95 0 0 chr15 46672249 46672354 -54708167 - AluSx SINE Alu -14 298 194 1125 106 0 0 chr15 46672355 46672496 -54708025 - AluSx SINE Alu -171 141 1 1151 139 166 5 chr15 46672528 46672751 -54707770 - MER21A LTR ERV1 -667 264 6 13281 152 30 36 chr15 46672756 46673881 -54706640 - MER21A-int LTR ERV1 0 4191 3061 240 35 0 0 chr15 46673881 46673910 -54706611 + (TA)n Simple_repeat Simple_repeat 2 30 0 2425 79 0 0 chr15 46673910 46674201 -54706320 - AluSg SINE Alu -19 291 1 13281 152 30 36 chr15 46674201 46674482 -54706039 - MER21A-int LTR ERV1 -1129 3062 2781 2273 57 7 57 chr15 46674482 46674783 -54705738 + AluY SINE Alu 1 286 -25 13281 152 30 36 chr15 46674783 46674795 -54705726 - MER21A-int LTR ERV1 -1410 2781 2770 207 0 0 0 chr15 46674795 46674818 -54705703 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 13281 152 30 36 chr15 46674818 46675763 -54704758 - MER21A-int LTR ERV1 -1421 2770 1838 1056 195 31 5 chr15 46675767 46675962 -54704559 - MER21A-int LTR ERV1 -2471 1720 1521 1741 169 0 29 chr15 46675962 46676275 -54704246 - AluJb SINE Alu -8 304 1 2195 86 31 14 chr15 46676299 46676619 -54703902 + AluSc SINE Alu 1 325 0 2289 89 3 0 chr15 46676625 46676939 -54703582 + AluSp SINE Alu 2 313 0 285 129 0 0 chr15 46676978 46677040 -54703481 - Charlie1 DNA MER1_type -177 2584 2523 300 180 0 0 chr15 46677085 46677135 -54703386 + L1MC1 LINE L1 6257 6306 -27 252 156 0 0 chr15 46677135 46677180 -54703341 + Charlie1 DNA MER1_type 2661 2705 -56 3087 120 95 51 chr15 46677188 46677548 -54702973 - L1MC1 LINE L1 0 6333 5990 1769 92 134 8 chr15 46677548 46677810 -54702711 - AluSc SINE Alu -14 295 1 3087 120 95 51 chr15 46677810 46677910 -54702611 - L1MC1 LINE L1 -343 5990 5896 2457 90 0 3 chr15 46677910 46678221 -54702300 - AluSq SINE Alu -3 310 1 3087 120 95 51 chr15 46678221 46678349 -54702172 - L1MC1 LINE L1 -437 5896 5718 435 216 39 39 chr15 46678501 46678654 -54701867 + AluSq SINE Alu 74 226 -87 2150 92 13 28 chr15 46678828 46679145 -54701376 + AluSp SINE Alu 1 312 -1 1753 135 5 158 chr15 46679153 46679584 -54700937 - L1MC1 LINE L1 -2263 5732 5368 585 124 0 34 chr15 46679585 46679674 -54700847 - AluS SINE Alu -225 87 2 2103 127 6 19 chr15 46679704 46680020 -54700501 - AluSx SINE Alu 0 312 1 2392 92 0 10 chr15 46680039 46680353 -54700168 - AluY SINE Alu 0 311 1 291 158 99 59 chr15 46680354 46680455 -54700066 - L1MC1 LINE L1 -966 5367 5263 997 120 8 0 chr15 46680456 46680589 -54699932 - AluSq/x SINE Alu -179 134 1 492 160 21 0 chr15 46680590 46680684 -54699837 - L1MC1 LINE L1 -864 5282 5187 2085 147 0 7 chr15 46680694 46681001 -54699520 - AluSx SINE Alu -7 305 1 1629 179 6 26 chr15 46681007 46681319 -54699202 - AluJo SINE Alu 0 312 7 1632 120 0 24 chr15 46681335 46681585 -54698936 - AluSq SINE Alu -2 311 68 1264 222 3 11 chr15 46681622 46681906 -54698615 + AluY SINE Alu 20 301 -10 1111 153 59 5 chr15 46682921 46683123 -54697398 + AluJo SINE Alu 83 295 -17 372 196 170 0 chr15 46683382 46683494 -54697027 + MIR SINE MIR 90 220 -42 1942 143 4 0 chr15 46683604 46683883 -54696638 - AluSx SINE Alu -24 288 9 1378 185 10 53 chr15 46683950 46684253 -54696268 - AluJo SINE Alu -22 290 1 2203 85 0 4 chr15 46684417 46684698 -54695823 + AluSx SINE Alu 28 307 -5 1698 141 81 25 chr15 46685210 46685493 -54695028 + AluJo SINE Alu 1 299 -13 2006 109 18 3 chr15 46685502 46685786 -54694735 + AluSq SINE Alu 9 296 -17 2166 103 14 3 chr15 46685793 46686085 -54694436 + AluSg SINE Alu 1 295 -15 1313 175 78 45 chr15 46686120 46686428 -54694093 + MLT1A2 LTR MaLR 57 374 0 2160 124 3 0 chr15 46686696 46686995 -54693526 + AluSx SINE Alu 2 301 -11 2083 135 0 13 chr15 46687000 46687304 -54693217 + AluSx SINE Alu 1 300 -12 2064 135 14 3 chr15 46687518 46687814 -54692707 + AluSx SINE Alu 3 301 -11 1713 156 21 17 chr15 46687900 46688188 -54692333 + AluSx SINE Alu 1 289 -23 401 198 130 51 chr15 46688216 46688393 -54692128 + L1MC5 LINE L1 7722 7912 -49 194 191 257 38 chr15 46688576 46688681 -54691840 - MIR SINE MIR -49 213 86 2115 136 0 0 chr15 46688695 46688990 -54691531 + AluSx SINE Alu 1 295 -17 2113 103 10 7 chr15 46690048 46690339 -54690182 + AluSg SINE Alu 1 292 -18 2236 98 0 14 chr15 46690430 46690727 -54689794 + AluSc SINE Alu 1 293 -16 486 319 87 9 chr15 46691589 46691818 -54688703 + MIR SINE MIR 4 250 -12 2353 80 13 3 chr15 46691930 46692230 -54688291 + AluY SINE Alu 1 303 -8 2310 114 0 0 chr15 46692591 46692889 -54687632 - AluSx SINE Alu -14 298 1 2270 108 3 10 chr15 46692963 46693277 -54687244 - AluSq SINE Alu -1 312 1 889 216 0 70 chr15 46693411 46693491 -54687030 - AluJo SINE Alu -99 213 129 2151 119 3 7 chr15 46693491 46693820 -54686701 - AluSx SINE Alu 0 312 1 889 216 0 70 chr15 46693820 46693966 -54686555 - AluJo SINE Alu -183 129 3 238 270 78 26 chr15 46694644 46694759 -54685762 - L2 LINE L2 -864 2450 2330 295 246 59 25 chr15 46695425 46695543 -54684978 + L1M4 LINE L1 5022 5143 -1003 1638 166 42 7 chr15 46695561 46695850 -54684671 + AluJo SINE Alu 1 299 -13 1912 127 0 0 chr15 46695904 46696157 -54684364 + AluSq SINE Alu 1 253 -60 337 139 0 14 chr15 46696551 46696623 -54683898 - L1MA7 LINE L1 -2 6289 6219 1058 135 6 0 chr15 46696623 46696801 -54683720 + (TA)n Simple_repeat Simple_repeat 1 179 0 471 185 0 0 chr15 46696801 46696893 -54683628 + (CATATA)n Simple_repeat Simple_repeat 1 92 0 3172 134 93 5 chr15 46696894 46697453 -54683068 - L1MA7 LINE L1 -73 6218 5611 1067 186 0 0 chr15 46697455 46697638 -54682883 - FRAM SINE Alu -1 175 1 5566 146 34 16 chr15 46697647 46698885 -54681636 - L1MA7 LINE L1 -703 5588 4319 1900 145 30 10 chr15 46698885 46699182 -54681339 + AluJo SINE Alu 1 303 -9 5566 146 34 16 chr15 46699182 46699409 -54681112 - L1MA7 LINE L1 -1972 4319 4098 1977 122 56 11 chr15 46699410 46699697 -54680824 + AluSx SINE Alu 1 300 -12 1433 165 60 1 chr15 46699697 46700010 -54680511 - L1 LINE L1 -2374 3772 3435 852 111 0 0 chr15 46700128 46700245 -54680276 + AluSg/x SINE Alu 183 299 -11 1392 219 61 39 chr15 46700250 46700793 -54679728 - L1 LINE L1 -3418 2728 2174 1903 111 63 0 chr15 46700797 46701067 -54679454 + AluSx SINE Alu 7 293 -19 24 32 0 0 chr15 46701251 46701282 -54679239 + AT_rich Low_complexity Low_complexity 1 31 0 30 0 0 0 chr15 46701358 46701388 -54679133 + AT_rich Low_complexity Low_complexity 1 30 0 405 197 13 0 chr15 46701444 46701520 -54679001 + L1PA8A LINE L1 6048 6124 -7 526 291 174 80 chr15 46701586 46701753 -54678768 + L2 LINE L2 2137 2287 -1027 226 88 59 0 chr15 46701753 46701853 -54678668 - Alu SINE Alu 0 350 249 1040 124 159 15 chr15 46701853 46701906 -54678615 + MER30 DNA MER1_type 1 45 -185 1794 171 7 7 chr15 46701906 46702204 -54678317 + AluSx SINE Alu 1 298 -14 1040 124 159 15 chr15 46702204 46702351 -54678170 + MER30 DNA MER1_type 45 230 0 526 291 174 80 chr15 46702351 46702712 -54677809 + L2 LINE L2 2286 2753 -561 917 228 56 0 chr15 46702765 46702962 -54677559 - MER58A DNA MER1_type -4 220 13 251 349 9 28 chr15 46702974 46703080 -54677441 + L2 LINE L2 2822 2925 -389 261 233 22 22 chr15 46703331 46703421 -54677100 + L1MEd LINE L1 636 725 -5394 1051 296 94 19 chr15 46703451 46703921 -54676600 + LTR33 LTR ERVL 9 513 -8 425 266 98 80 chr15 46703953 46704068 -54676453 + L1MEd LINE L1 993 1104 -1386 2133 122 3 0 chr15 46704068 46704362 -54676159 - AluSq SINE Alu -18 295 1 425 266 98 80 chr15 46704362 46704396 -54676125 + L1MEd LINE L1 1104 1136 -1354 1776 141 36 36 chr15 46704396 46704701 -54675820 + AluJb SINE Alu 1 305 -7 425 266 98 80 chr15 46704701 46704877 -54675644 + L1MEd LINE L1 1136 1322 -1168 1583 195 122 3 chr15 46704878 46705262 -54675259 - MER63B DNA MER1_type -6 430 1 3747 237 48 20 chr15 46705418 46706643 -54673878 + L1M4 LINE L1 3144 4403 -1743 1778 112 0 8 chr15 46706670 46706919 -54673602 - AluSq SINE Alu 0 313 67 1838 194 72 16 chr15 46706923 46707309 -54673212 + MLT2B1 LTR ERVL 63 470 -50 1568 220 3 0 chr15 46707324 46707656 -54672865 + MLT-int LTR MaLR 1 333 -1402 5775 142 10 36 chr15 46707659 46708763 -54671758 - L1PB2 LINE L1 -3 6148 5017 2382 64 0 0 chr15 46708763 46709066 -54671455 - AluY SINE Alu 0 303 1 5775 142 10 36 chr15 46709066 46709673 -54670848 - L1PB2 LINE L1 -1134 5017 4493 2063 98 8 0 chr15 46709673 46709939 -54670582 - AluSq SINE Alu -45 268 1 5775 142 10 36 chr15 46709939 46710035 -54670486 - L1PB2 LINE L1 -1658 4493 4396 1412 116 0 20 chr15 46710042 46710280 -54670241 - AluSg/x SINE Alu 0 319 86 4104 177 15 47 chr15 46710280 46710825 -54669696 - L1PB2 LINE L1 -1729 4417 3919 2182 107 31 0 chr15 46710825 46711115 -54669406 - AluSx SINE Alu -13 299 1 4104 177 15 47 chr15 46711115 46711584 -54668937 - L1PB2 LINE L1 -2227 3919 3436 527 221 0 0 chr15 46711585 46711689 -54668832 + MLT-int LTR MaLR 320 423 -1312 2172 129 0 0 chr15 46711702 46712004 -54668517 + AluSx SINE Alu 11 312 0 250 62 62 21 chr15 46712015 46712063 -54668458 + GA-rich Low_complexity Low_complexity 5 54 0 2012 115 10 23 chr15 46712088 46712392 -54668129 - AluSq SINE Alu -13 300 1 1231 212 7 33 chr15 46712392 46712698 -54667823 + MLT1A1-int LTR MaLR 435 732 -639 2333 73 3 16 chr15 46712707 46713022 -54667499 + AluY SINE Alu 1 311 0 234 132 0 0 chr15 46713026 46713064 -54667457 + MLT1A1-int LTR MaLR 819 856 -515 2072 216 30 17 chr15 46713354 46713822 -54666699 + MLT1A1-int LTR MaLR 1262 1735 0 1732 175 8 38 chr15 46713822 46714187 -54666334 + MLT1A1 LTR MaLR 1 354 -11 5154 185 47 24 chr15 46714192 46714520 -54666001 + L1MC1 LINE L1 4415 4734 -1599 2418 77 7 0 chr15 46714520 46714818 -54665703 + AluSx SINE Alu 1 300 -12 5154 185 47 24 chr15 46714818 46715222 -54665299 + L1MC1 LINE L1 4734 5127 -1206 2116 125 0 3 chr15 46715222 46715507 -54665014 + AluSx SINE Alu 1 286 -26 230 0 0 32 chr15 46715507 46715538 -54664983 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 5154 185 47 24 chr15 46715548 46716240 -54664281 + L1MC1 LINE L1 5127 5890 -443 9161 97 11 9 chr15 46716240 46717525 -54662996 + HSMAR1 DNA Mariner 1 1287 0 5154 185 47 24 chr15 46717525 46717889 -54662632 + L1MC1 LINE L1 5890 6244 -89 2289 114 0 0 chr15 46717910 46718207 -54662314 - AluSq SINE Alu -16 297 1 423 0 0 0 chr15 46718258 46718305 -54662216 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 364 259 6 82 chr15 46718418 46718479 -54662042 + L1MC4 LINE L1 6952 7016 -1026 1836 162 10 7 chr15 46718479 46718782 -54661739 + AluJb SINE Alu 1 304 -8 364 259 6 82 chr15 46718782 46718878 -54661643 + L1MC4 LINE L1 7016 7097 -945 569 223 54 22 chr15 46718918 46719142 -54661379 + L1MC5 LINE L1 6993 7223 -738 245 314 33 33 chr15 46719166 46719319 -54661202 + L1MC4a LINE L1 7244 7396 -412 1990 127 40 0 chr15 46719494 46719794 -54660727 - AluSx SINE Alu 0 312 1 229 261 0 22 chr15 46719804 46719896 -54660625 - L1MC4 LINE L1 -1339 6703 6614 240 167 0 0 chr15 46719896 46719944 -54660577 + (TA)n Simple_repeat Simple_repeat 2 49 0 242 267 12 0 chr15 46719947 46720033 -54660488 + L1MC4 LINE L1 6615 6701 -1341 230 264 23 0 chr15 46719994 46720081 -54660440 - L1MC4 LINE L1 -1340 6702 6614 * 306 245 0 82 chr15 46720097 46720195 -54660326 + L1MC4 LINE L1 6614 6703 -1339 240 234 130 0 chr15 46720234 46720311 -54660210 - L1MC4 LINE L1 -1342 6700 6614 * 263 181 83 0 chr15 46720242 46720314 -54660207 + L1MC4 LINE L1 6615 6692 -1350 226 167 48 0 chr15 46720348 46720390 -54660131 + MER20 DNA MER1_type 1 44 -175 508 268 47 22 chr15 46720481 46720757 -54659764 + L1MC5 LINE L1 7501 7783 -178 1262 119 0 0 chr15 46720759 46720919 -54659602 + AluSx SINE Alu 1 160 -152 874 279 24 34 chr15 46721566 46721774 -54658747 + AluY SINE Alu 94 299 -12 1559 185 35 78 chr15 46722528 46722622 -54657899 + MLT1C LTR MaLR 1 98 -369 1701 94 75 130 chr15 46722622 46722953 -54657568 + AluSp SINE Alu 1 313 0 1559 185 35 78 chr15 46722953 46723171 -54657350 + MLT1C LTR MaLR 98 287 -180 2179 115 7 0 chr15 46723171 46723476 -54657045 + AluSx SINE Alu 2 308 -4 1559 185 35 78 chr15 46723476 46723649 -54656872 + MLT1C LTR MaLR 287 466 -1 2238 101 0 3 chr15 46723958 46724254 -54656267 - AluSc SINE Alu -8 301 7 1299 119 0 0 chr15 46725316 46725501 -54655020 + AluSg/x SINE Alu 115 299 -11 1942 95 7 3 chr15 46725669 46725952 -54654569 - L1PB2 LINE L1 -3 6148 5865 313 306 110 58 chr15 46726234 46726407 -54654114 + MIR SINE MIR 10 191 -71 2333 91 7 0 chr15 46726675 46726972 -54653549 + AluSq SINE Alu 1 299 -14 332 247 105 40 chr15 46727002 46727249 -54653272 + L1ME4a LINE L1 5855 6117 -4 1951 150 3 3 chr15 46727329 46727615 -54652906 + AluJo SINE Alu 3 288 -24 1187 321 116 30 chr15 46727742 46728207 -54652314 + L3 LINE CR1 117 650 -927 2360 96 0 3 chr15 46728207 46728508 -54652013 - AluSg SINE Alu -10 300 1 1187 321 116 30 chr15 46728508 46728665 -54651856 + L3 LINE CR1 650 792 -785 237 247 130 0 chr15 46728679 46728756 -54651765 + L3 LINE CR1 1329 1415 -162 298 274 57 8 chr15 46729132 46729256 -54651265 - LTR67 LTR ERVL -3 554 425 249 209 0 0 chr15 46730359 46730426 -54650095 + (TA)n Simple_repeat Simple_repeat 1 67 0 383 275 55 0 chr15 46730559 46730701 -54649820 - L1ME LINE L1 -540 5581 5434 1070 166 50 55 chr15 46730837 46731156 -54649365 + MER33 DNA MER1_type 1 308 -16 262 220 85 0 chr15 46731330 46731389 -54649132 + MER91 DNA MER1_type 77 140 0 22 0 0 0 chr15 46731468 46731490 -54649031 + AT_rich Low_complexity Low_complexity 1 22 0 383 305 122 89 chr15 46732860 46733254 -54647267 - HAL1 LINE L1 -763 1744 1338 204 40 0 0 chr15 46733861 46733886 -54646635 + (TTTTTG)n Simple_repeat Simple_repeat 5 29 0 2125 112 0 14 chr15 46734481 46734801 -54645720 - AluSx SINE Alu 0 316 1 282 234 144 58 chr15 46734932 46735120 -54645401 + L1ME LINE L1 5546 5749 -372 2457 74 3 6 chr15 46736246 46736558 -54643963 + AluSp SINE Alu 1 311 -2 1858 237 131 27 chr15 46736598 46737294 -54643227 - LTR50 LTR ERVL -24 771 4 234 257 0 14 chr15 46737354 46737424 -54643097 + GA-rich Low_complexity Low_complexity 2 70 0 2225 102 7 0 chr15 46737778 46738073 -54642448 + AluSx SINE Alu 1 297 -15 315 0 0 0 chr15 46738242 46738277 -54642244 + (TG)n Simple_repeat Simple_repeat 1 35 0 2230 109 6 3 chr15 46739260 46739571 -54640950 - AluSx SINE Alu 0 312 1 180 0 0 0 chr15 46739836 46739856 -54640665 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 529 152 0 0 chr15 46739926 46740018 -54640503 + L1MB3 LINE L1 5570 5661 -522 3113 133 9 11 chr15 46740058 46740370 -54640151 + L1MB3 LINE L1 5652 5964 -219 1681 147 10 38 chr15 46740370 46740683 -54639838 + AluJo SINE Alu 1 304 -8 3113 133 9 11 chr15 46740683 46740896 -54639625 + L1MB3 LINE L1 5964 6176 -7 1491 179 16 82 chr15 46741014 46741454 -54639067 + Charlie1b DNA MER1_type 1 411 -112 1966 141 70 27 chr15 46741788 46742200 -54638321 + MER50 LTR ERV1 10 439 -295 4152 118 188 88 chr15 46742214 46743504 -54637017 - pTR5 LTR ERV1 -143 2295 742 618 171 7 36 chr15 46743508 46743648 -54636873 + MER50 LTR ERV1 443 578 -156 2427 78 15 0 chr15 46744531 46744866 -54635655 - L1PA14 LINE L1 -18 6143 5804 529 179 98 0 chr15 46744869 46744981 -54635540 + Charlie1b DNA MER1_type 401 523 0 629 349 24 8 chr15 46745641 46745893 -54634628 + MIR SINE MIR 7 262 0 938 128 0 0 chr15 46745952 46746077 -54634444 + AluSq/x SINE Alu 1 125 -187 1851 114 12 4 chr15 46746200 46746455 -54634066 - AluSg SINE Alu -53 257 1 1994 129 3 10 chr15 46746808 46747121 -54633400 + AluSx SINE Alu 1 312 0 359 327 39 18 chr15 46747142 46747270 -54633251 + MIR SINE MIR 2 127 -81 2382 102 0 6 chr15 46747306 46747619 -54632902 + AluSx SINE Alu 1 311 -1 553 132 0 0 chr15 46747622 46747698 -54632823 + AluSx SINE Alu 1 76 -237 1365 158 27 5 chr15 46747839 46748061 -54632460 + AluSx SINE Alu 85 311 -1 2211 114 0 3 chr15 46748569 46748868 -54631653 + AluSg SINE Alu 2 299 -11 1193 312 37 24 chr15 46748897 46749332 -54631189 + MER115 DNA AcHobo 1 437 -256 3406 219 76 12 chr15 46749364 46750163 -54630358 - MER21B LTR ERV1 -11 852 3 887 279 29 16 chr15 46750191 46750354 -54630167 + MER115 DNA AcHobo 445 613 -80 2562 56 0 0 chr15 46750354 46750657 -54629864 - AluY SINE Alu -8 303 1 887 279 29 16 chr15 46750657 46750737 -54629784 + MER115 DNA AcHobo 613 691 -2 265 175 0 79 chr15 46750964 46751027 -54629494 + L2 LINE L2 3211 3268 -45 833 165 0 0 chr15 46751047 46751180 -54629341 - FLAM_C SINE Alu 0 133 1 2302 119 0 3 chr15 46751189 46751491 -54629030 - AluSx SINE Alu -11 301 1 2326 112 0 0 chr15 46751576 46751888 -54628633 - AluSx SINE Alu 0 312 1 747 139 0 0 chr15 46751933 46752076 -54628445 - FLAM_A SINE Alu 0 150 8 878 146 18 30 chr15 46752678 46752843 -54627678 + AluSp SINE Alu 1 163 -150 1062 77 0 0 chr15 46753249 46753379 -54627142 + AluSp SINE Alu 167 296 -17 1068 224 110 27 chr15 46753699 46753962 -54626559 - LTR40a LTR ERVL 0 519 235 2007 144 7 0 chr15 46754079 46754384 -54626137 - AluSx SINE Alu -5 307 1 709 220 112 58 chr15 46754385 46754704 -54625817 - LTR54 LTR ERV1 -28 482 78 1899 158 3 0 chr15 46755781 46756079 -54624442 + AluSp SINE Alu 1 299 -14 21 0 0 0 chr15 46756316 46756337 -54624184 + AT_rich Low_complexity Low_complexity 1 21 0 630 125 0 0 chr15 46756526 46756614 -54623907 - AluS SINE Alu -223 89 2 411 284 65 48 chr15 46756690 46756772 -54623749 + MIR SINE MIR 20 99 -163 1967 126 7 0 chr15 46756772 46757049 -54623472 - AluSg SINE Alu -21 289 11 411 284 65 48 chr15 46757049 46757195 -54623326 + MIR SINE MIR 99 252 -10 2295 109 3 0 chr15 46757617 46757920 -54622601 + AluSq SINE Alu 9 312 -1 909 137 8 0 chr15 46757920 46758051 -54622470 + FLAM_C SINE Alu 1 132 -11 4081 183 83 15 chr15 46758059 46758536 -54621985 - MER21B LTR ERV1 -3 860 306 2296 95 3 0 chr15 46758536 46758830 -54621691 - AluSg SINE Alu -15 295 1 4081 183 83 15 chr15 46758830 46759143 -54621378 - MER21B LTR ERV1 -557 306 16 2016 124 13 0 chr15 46759143 46759450 -54621071 + MER2 DNA MER2_type 1 311 -34 947 96 0 0 chr15 46760094 46760219 -54620302 + FLAM_C SINE Alu 1 125 -8 2319 78 3 0 chr15 46760243 46760555 -54619966 + AluSx SINE Alu 1 313 0 745 293 61 56 chr15 46760653 46761049 -54619472 + MLT1J2 LTR MaLR 9 406 -44 2080 137 0 13 chr15 46761081 46761394 -54619127 + AluSx SINE Alu 1 309 -3 2099 108 0 30 chr15 46761638 46761943 -54618578 - AluSx SINE Alu -16 296 1 2007 104 73 0 chr15 46763191 46763479 -54617042 - AluSx SINE Alu -3 309 1 278 323 58 26 chr15 46763482 46763576 -54616945 - MIR SINE MIR -17 245 143 5002 76 19 29 chr15 46763576 46764021 -54616500 + LTR8 LTR ERV1 1 438 -253 2101 116 3 7 chr15 46764021 46764322 -54616199 + AluSg SINE Alu 1 300 -10 5002 76 19 29 chr15 46764322 46764572 -54615949 + LTR8 LTR ERV1 438 689 -2 278 323 58 26 chr15 46764572 46764632 -54615889 - MIR SINE MIR -119 143 86 365 211 199 81 chr15 46764693 46764729 -54615792 - MER5A DNA MER1_type 0 189 159 2452 65 0 0 chr15 46764729 46765023 -54615498 + AluY SINE Alu 1 294 -17 2075 142 0 3 chr15 46765031 46765327 -54615194 + AluJb SINE Alu 1 295 -17 365 211 199 81 chr15 46765327 46765442 -54615079 - MER5A DNA MER1_type -36 153 10 268 289 70 9 chr15 46765447 46765561 -54614960 - MLT1L LTR MaLR -49 566 446 2219 120 3 0 chr15 46765567 46765875 -54614646 - AluSp SINE Alu -4 309 1 1006 126 0 0 chr15 46765875 46766010 -54614511 - AluSq/x SINE Alu -178 135 1 300 261 0 108 chr15 46766011 46766066 -54614455 - MLT1L LTR MaLR -168 447 408 2191 105 30 0 chr15 46766066 46766361 -54614160 + AluSq SINE Alu 1 304 -9 300 261 0 108 chr15 46766361 46766416 -54614105 - MLT1L LTR MaLR -207 408 349 2298 98 0 0 chr15 46766505 46766800 -54613721 + AluSc SINE Alu 2 296 -13 243 287 85 18 chr15 46767497 46767661 -54612860 + L1M4 LINE L1 4913 5087 -1059 2212 126 10 0 chr15 46767827 46768128 -54612393 + AluSx SINE Alu 1 304 -8 207 301 12 0 chr15 46768397 46768480 -54612041 + (CATA)n Simple_repeat Simple_repeat 3 86 0 2483 77 0 0 chr15 46768529 46768826 -54611695 - AluY SINE Alu -14 297 1 2163 130 0 7 chr15 46768867 46769175 -54611346 - AluSx SINE Alu -2 310 5 2309 115 0 3 chr15 46769314 46769618 -54610903 - AluSx SINE Alu -9 303 1 645 146 64 0 chr15 46771033 46771143 -54609378 + MER94 DNA DNA 1 117 -17 2172 91 40 13 chr15 46771224 46771522 -54608999 - AluSq SINE Alu -7 306 1 252 0 0 0 chr15 46771592 46771620 -54608901 + (TA)n Simple_repeat Simple_repeat 1 28 0 1466 194 0 32 chr15 46771621 46771905 -54608616 - AluJo SINE Alu -27 285 11 1060 200 31 0 chr15 46772918 46773113 -54607408 + MER3 DNA MER1_type 8 208 -1 2331 105 3 3 chr15 46773150 46773463 -54607058 + AluSq SINE Alu 1 313 0 2203 121 3 0 chr15 46773591 46773880 -54606641 + AluSg SINE Alu 3 292 -18 775 263 72 90 chr15 46773884 46774274 -54606247 + L2 LINE L2 2779 3135 -178 1708 168 70 3 chr15 46774274 46774560 -54605961 - AluJo SINE Alu -7 305 1 775 263 72 90 chr15 46774560 46774670 -54605851 + L2 LINE L2 3135 3245 -68 635 190 109 22 chr15 46774672 46774809 -54605712 + MER63 DNA MER1_type 1 775 -287 810 253 29 17 chr15 46774810 46775051 -54605470 + L1ME3A LINE L1 5925 6168 -2 2193 121 16 0 chr15 46775067 46775372 -54605149 + AluSx SINE Alu 1 310 -2 742 269 0 0 chr15 46775390 46775546 -54604975 + AluSg/x SINE Alu 134 289 -23 21 0 0 0 chr15 46775546 46775567 -54604954 + AT_rich Low_complexity Low_complexity 1 21 0 1139 89 7 0 chr15 46776072 46776218 -54604303 + AluSq/x SINE Alu 3 149 -163 555 104 0 0 chr15 46777164 46777241 -54603280 - AluS SINE Alu -236 77 1 1820 152 11 3 chr15 46777566 46777849 -54602672 + AluJb SINE Alu 1 285 -27 2207 132 0 0 chr15 46778154 46778464 -54602057 - AluSx SINE Alu -2 310 1 2266 101 0 0 chr15 46778645 46778933 -54601588 - AluSg SINE Alu -22 288 1 2257 109 0 6 chr15 46779353 46779664 -54600857 + AluSq SINE Alu 1 309 -4 2197 92 3 3 chr15 46780189 46780493 -54600028 - AluSq SINE Alu 0 305 2 2736 107 9 27 chr15 46780594 46781180 -54599341 + L1MA7 LINE L1 5620 6290 -1 676 117 0 0 chr15 46781326 46781420 -54599101 + AluSg/x SINE Alu 195 288 -21 934 181 77 22 chr15 46781460 46781740 -54598781 - L1M LINE L1 -737 5429 5140 180 0 0 0 chr15 46781741 46781761 -54598760 + (TA)n Simple_repeat Simple_repeat 2 21 0 2304 112 3 0 chr15 46781761 46782066 -54598455 - AluSg SINE Alu -4 306 1 676 234 70 0 chr15 46782077 46782235 -54598286 - FRAM SINE Alu -14 162 1 388 197 0 13 chr15 46782346 46782422 -54598099 - AluSc SINE Alu -109 190 116 638 214 19 31 chr15 46783116 46783275 -54597246 - AluSq SINE Alu -104 209 53 972 156 81 6 chr15 46783275 46783448 -54597073 - AluSg SINE Alu -124 186 1 214 329 119 19 chr15 46784152 46784362 -54596159 + L2 LINE L2 2557 2787 -527 2208 89 10 0 chr15 46784464 46784757 -54595764 + AluSp SINE Alu 3 298 -15 593 125 188 18 chr15 46784778 46784890 -54595631 + FLAM_C SINE Alu 11 141 -2 1596 97 5 5 chr15 46784895 46785111 -54595410 + AluSq SINE Alu 1 216 -97 26 0 0 0 chr15 46785380 46785406 -54595115 + AT_rich Low_complexity Low_complexity 1 26 0 754 186 0 8 chr15 46785819 46785948 -54594573 - FLAM_C SINE Alu -5 128 1 2135 127 7 0 chr15 46785976 46786275 -54594246 + AluSx SINE Alu 1 301 -11 2054 99 7 4 chr15 46786357 46786630 -54593891 - AluSp SINE Alu -17 296 23 535 180 180 0 chr15 46786652 46786763 -54593758 - FLAM_C SINE Alu -1 132 2 2255 119 0 3 chr15 46786845 46787148 -54593373 + AluSx SINE Alu 1 302 -10 695 163 21 146 chr15 46787173 46787276 -54593245 - L1M4 LINE L1 -774 5372 5314 1788 133 7 0 chr15 46787276 46787546 -54592975 - AluSq SINE Alu 0 313 42 695 163 21 146 chr15 46787546 46787682 -54592839 - L1M4 LINE L1 -832 5314 5163 1208 128 10 15 chr15 46787686 46787882 -54592639 - AluSg/x SINE Alu 0 310 116 1749 193 0 0 chr15 46787899 46788194 -54592327 - AluSx SINE Alu -17 295 1 1068 150 0 0 chr15 46788210 46788377 -54592144 - AluSq SINE Alu -12 301 135 221 0 0 33 chr15 46788377 46788407 -54592114 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 1847 117 19 11 chr15 46788408 46788673 -54591848 - AluSx SINE Alu -23 289 23 854 164 7 0 chr15 46789824 46789964 -54590557 - AluY SINE Alu -161 150 10 688 178 0 0 chr15 46790003 46790110 -54590411 - FLAM_C SINE Alu -34 109 3 448 164 0 0 chr15 46790135 46790208 -54590313 + AluJ/FLAM SINE Alu 1 73 -239 1760 131 11 8 chr15 46790208 46790468 -54590053 + AluSx SINE Alu 42 302 -10 2341 99 0 3 chr15 46790468 46790770 -54589751 + AluSq SINE Alu 1 301 -12 1910 122 0 7 chr15 46790813 46791083 -54589438 - AluSq SINE Alu -45 268 1 249 174 22 0 chr15 46791120 46791166 -54589355 - MER5A DNA MER1_type -121 68 22 358 172 0 0 chr15 46791381 46791439 -54589082 - AluS SINE Alu -244 59 2 1271 207 66 47 chr15 46791444 46791554 -54588967 - L1M4 LINE L1 -3277 2869 2763 2596 71 0 0 chr15 46791554 46791864 -54588657 + AluY SINE Alu 1 310 -1 1271 207 66 47 chr15 46791864 46792115 -54588406 - L1M4 LINE L1 -3383 2763 2501 187 301 96 14 chr15 46792125 46792198 -54588323 + MER5B DNA MER1_type 100 178 0 509 193 118 34 chr15 46792206 46792325 -54588196 - MER5A DNA MER1_type 0 189 61 1106 61 0 0 chr15 46792338 46792470 -54588051 - AluY SINE Alu -179 132 1 351 197 28 0 chr15 46792471 46792542 -54587979 - MER5A DNA MER1_type -114 75 3 379 132 53 13 chr15 46792557 46792633 -54587888 + MER5B DNA MER1_type 7 85 -93 665 96 10 19 chr15 46792639 46792743 -54587778 - MER4A LTR ERV1 -561 103 1 1549 151 33 15 chr15 46792745 46793016 -54587505 + AluJb SINE Alu 29 304 -8 2335 111 0 0 chr15 46793145 46793443 -54587078 + AluSq SINE Alu 1 298 -15 360 335 124 28 chr15 46793542 46794082 -54586439 + L2 LINE L2 2263 2854 -460 200 346 90 38 chr15 46794122 46794388 -54586133 + L2 LINE L2 2922 3201 -71 429 287 173 32 chr15 46794399 46794589 -54585932 - L2 LINE L2 -4 3309 3147 2520 77 3 0 chr15 46794589 46794899 -54585622 + AluSp SINE Alu 1 311 -2 429 287 173 32 chr15 46794899 46795195 -54585326 - L2 LINE L2 -166 3147 2894 2228 89 3 7 chr15 46795195 46795497 -54585024 - AluSc SINE Alu -8 301 1 429 287 173 32 chr15 46795497 46795717 -54584804 - L2 LINE L2 -419 2894 2511 280 321 0 38 chr15 46796323 46796482 -54584039 + C-rich Low_complexity Low_complexity 4 156 0 2534 68 0 3 chr15 46797801 46798109 -54582412 - AluSg SINE Alu -2 308 2 2381 82 0 38 chr15 46798686 46799004 -54581517 + AluSg SINE Alu 3 308 -2 218 274 32 0 chr15 46799110 46799172 -54581349 - MIR3 SINE MIR -7 201 138 2377 96 0 10 chr15 46799329 46799641 -54580880 - AluSx SINE Alu -3 309 1 1990 123 17 3 chr15 46799781 46800073 -54580448 - AluSx SINE Alu -16 296 1 2138 125 6 3 chr15 46800080 46800391 -54580130 - AluSp SINE Alu 0 313 2 1544 161 4 0 chr15 46800471 46800703 -54579818 + AluJo SINE Alu 55 290 -22 189 0 0 0 chr15 46800703 46800724 -54579797 + (CA)n Simple_repeat Simple_repeat 2 22 0 1634 189 55 32 chr15 46801023 46801168 -54579353 + MLT1A2 LTR MaLR 24 164 -210 2111 123 13 0 chr15 46801168 46801468 -54579053 + AluSx SINE Alu 1 304 -8 1634 189 55 32 chr15 46801468 46801665 -54578856 + MLT1A2 LTR MaLR 164 374 0 257 289 66 0 chr15 46801850 46801926 -54578595 - MIR SINE MIR -87 121 41 2481 81 0 0 chr15 46801956 46802265 -54578256 - AluY SINE Alu -2 309 1 793 208 0 8 chr15 46802298 46802428 -54578093 - FLAM_C SINE Alu -14 129 1 1263 203 48 22 chr15 46802523 46802794 -54577727 + AluJo SINE Alu 1 278 -34 414 0 0 0 chr15 46802794 46802840 -54577681 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 310 91 23 0 chr15 46803034 46803078 -54577443 + Charlie8 DNA MER1_type 1378 1422 -995 507 197 142 21 chr15 46803100 46803333 -54577188 + AluY SINE Alu 2 262 -49 180 0 0 0 chr15 46803561 46803581 -54576940 + (GGGAA)n Simple_repeat Simple_repeat 4 23 0 2104 124 10 10 chr15 46803615 46803921 -54576600 + AluSc SINE Alu 1 306 -3 298 164 16 16 chr15 46803939 46804000 -54576521 + L1MB4 LINE L1 5296 5356 -977 794 150 65 40 chr15 46804004 46804204 -54576317 + L1MB4 LINE L1 5975 6179 -1 485 153 12 0 chr15 46804213 46804298 -54576223 + L1MB8 LINE L1 6093 6178 0 1513 108 5 0 chr15 46804719 46804923 -54575598 - AluSg/x SINE Alu -1 311 107 416 161 0 16 chr15 46804923 46804985 -54575536 - AluS SINE Alu -250 62 2 2267 87 7 0 chr15 46805048 46805337 -54575184 - AluSx SINE Alu -21 291 1 26 50 0 0 chr15 46805841 46805881 -54574640 + AT_rich Low_complexity Low_complexity 1 40 0 1607 145 84 30 chr15 46806480 46806776 -54573745 + AluJo SINE Alu 1 312 0 186 318 94 12 chr15 46807244 46807329 -54573192 - MIR3 SINE MIR -114 94 3 237 119 0 0 chr15 46807680 46807722 -54572799 + (TA)n Simple_repeat Simple_repeat 2 43 0 34 42 0 0 chr15 46807783 46807831 -54572690 + AT_rich Low_complexity Low_complexity 1 48 0 1562 279 64 20 chr15 46808339 46808933 -54571588 - L1ME3A LINE L1 0 6170 5551 2019 112 3 24 chr15 46808999 46809286 -54571235 - AluSg SINE Alu -29 281 1 1340 204 11 21 chr15 46809446 46809730 -54570791 - AluJo SINE Alu -31 281 1 2154 101 7 0 chr15 46812498 46812775 -54567746 - AluSg SINE Alu -31 279 1 612 247 111 104 chr15 46812929 46813390 -54567131 - MLT1H LTR MaLR -7 542 79 3285 157 54 2 chr15 46813916 46814240 -54566281 - Tigger1 DNA MER2_type 0 2418 2052 1471 163 45 38 chr15 46814240 46814529 -54565992 - AluJo SINE Alu -10 302 12 3285 157 54 2 chr15 46814529 46814758 -54565763 - Tigger1 DNA MER2_type -366 2052 1836 361 305 141 15 chr15 46815036 46815423 -54565098 - L1ME LINE L1 -359 5807 5375 2109 106 6 37 chr15 46815671 46815993 -54564528 - AluSq SINE Alu -1 312 1 22 0 0 0 chr15 46816351 46816373 -54564148 + AT_rich Low_complexity Low_complexity 1 22 0 376 299 59 107 chr15 46816856 46817210 -54563311 - L2 LINE L2 -1 3271 2935 197 214 0 169 chr15 46817293 46817356 -54563165 - MER5B DNA MER1_type -2 176 131 787 137 183 46 chr15 46817356 46817509 -54563012 + FAM SINE Alu 2 175 0 197 214 0 169 chr15 46817509 46817534 -54562987 - MER5B DNA MER1_type -47 131 103 2013 116 0 27 chr15 46817540 46817861 -54562660 - AluJb SINE Alu 0 313 1 212 226 32 48 chr15 46817895 46817957 -54562564 + MIR SINE MIR 2 62 -200 3082 220 75 82 chr15 46818042 46818422 -54562099 - L1M4 LINE L1 -1757 4389 4008 257 27 0 0 chr15 46818422 46818459 -54562062 - AluY SINE Alu 0 302 266 2270 56 42 10 chr15 46818459 46818747 -54561774 - AluY SINE Alu -14 297 1 3082 220 75 82 chr15 46818747 46819221 -54561300 - L1M4 LINE L1 -2137 4009 3533 1307 53 0 0 chr15 46819221 46819373 -54561148 + L1PA4 LINE L1 6000 6151 -4 3082 220 75 82 chr15 46819373 46819838 -54560683 - L1M4 LINE L1 -2613 3533 3041 450 109 0 0 chr15 46819838 46819902 -54560619 - AluSc SINE Alu -9 300 237 2315 75 3 14 chr15 46820207 46820502 -54560019 + AluSc SINE Alu 2 293 -16 21 0 0 0 chr15 46820507 46820528 -54559993 + AT_rich Low_complexity Low_complexity 1 21 0 325 250 0 34 chr15 46820597 46820685 -54559836 - L2 LINE L2 -2 3311 3227 832 175 11 73 chr15 46820998 46821175 -54559346 - AluJo SINE Alu 0 302 137 25 31 0 0 chr15 46821188 46821220 -54559301 + AT_rich Low_complexity Low_complexity 1 32 0 1497 181 25 7 chr15 46821220 46821496 -54559025 - AluJb SINE Alu -26 286 6 2463 41 3 3 chr15 46821673 46821966 -54558555 + AluY SINE Alu 1 293 -18 623 273 204 14 chr15 46822088 46822304 -54558217 + MIR SINE MIR 3 259 -3 818 187 0 8 chr15 46822381 46822515 -54558006 - AluJo SINE Alu -169 133 1 2228 114 7 0 chr15 46822543 46822842 -54557679 + AluSx SINE Alu 1 301 -11 1811 119 8 0 chr15 46822924 46823177 -54557344 - AluSq SINE Alu -17 296 42 596 213 0 29 chr15 46823177 46823313 -54557208 - L1M4 LINE L1 -852 5294 5163 1201 128 10 15 chr15 46823317 46823513 -54557008 - AluSg/x SINE Alu 0 310 116 1735 193 0 0 chr15 46823530 46823825 -54556696 - AluSx SINE Alu -17 295 1 1870 127 30 23 chr15 46823841 46824008 -54556513 - AluSq SINE Alu -12 301 137 212 0 0 35 chr15 46824008 46824037 -54556484 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 2347 76 0 0 chr15 46824038 46824326 -54556195 - AluSg SINE Alu -22 288 1 2306 108 0 0 chr15 46824326 46824622 -54555899 - AluSg SINE Alu -14 296 1 1870 127 30 23 chr15 46824622 46824750 -54555771 - AluSq SINE Alu -175 138 1 2420 57 0 0 chr15 46824761 46825062 -54555459 - AluY SINE Alu 0 301 1 2915 206 58 16 chr15 46825062 46825852 -54554669 - L1M4 LINE L1 -979 5167 4345 607 204 88 0 chr15 46825865 46825978 -54554543 - FLAM_A SINE Alu -10 123 1 1994 146 0 10 chr15 46825988 46826290 -54554231 - AluJb SINE Alu -13 299 1 295 262 107 0 chr15 46826413 46826497 -54554024 + Charlie2 DNA MER1_type 1 93 -2689 2303 109 6 3 chr15 46826554 46826866 -54553655 - AluSq SINE Alu 0 313 1 1149 183 9 14 chr15 46827504 46827723 -54552798 - AluJb SINE Alu -9 303 86 2328 66 0 0 chr15 46828020 46828309 -54552212 - AluY SINE Alu -6 305 17 1746 185 17 0 chr15 46828311 46828613 -54551908 - 7SLRNA srpRNA srpRNA -13 307 1 2468 81 0 0 chr15 46828767 46829076 -54551445 - AluSq SINE Alu 0 313 5 188 320 0 20 chr15 46829276 46829326 -54551195 + L2 LINE L2 3136 3184 -88 593 233 82 24 chr15 46829593 46829899 -54550622 + L1ME1 LINE L1 5863 6333 -1 22 56 0 0 chr15 46830668 46830704 -54549817 + GC_rich Low_complexity Low_complexity 1 36 0 2098 94 24 3 chr15 46832034 46832332 -54548189 - AluSx SINE Alu -8 304 1 1515 194 110 59 chr15 46832340 46832847 -54547674 - L1MC5 LINE L1 -51 7910 7370 2010 131 7 0 chr15 46832847 46833153 -54547368 - AluSx SINE Alu -4 308 1 1515 194 110 59 chr15 46833153 46833207 -54547314 - L1MC5 LINE L1 -591 7370 7320 1058 102 0 0 chr15 46833219 46833356 -54547165 + AluSg/x SINE Alu 158 294 -16 1543 117 74 27 chr15 46833378 46833635 -54546886 + AluSq SINE Alu 25 293 -20 1939 103 53 13 chr15 46833759 46834060 -54546461 - AluSq SINE Alu 0 313 1 1839 127 49 18 chr15 46834329 46834613 -54545908 + AluJb SINE Alu 5 297 -15 1819 86 9 0 chr15 46834920 46835152 -54545369 - AluSq SINE Alu -14 299 66 2126 91 31 0 chr15 46835321 46835607 -54544914 - AluSq SINE Alu -12 301 7 261 0 0 0 chr15 46836219 46836248 -54544273 + (TG)n Simple_repeat Simple_repeat 2 30 0 2358 89 0 0 chr15 46836249 46836541 -54543980 - AluSg SINE Alu -17 293 2 311 239 161 31 chr15 46836542 46836672 -54543849 - MIR SINE MIR -55 207 61 1406 170 3 95 chr15 46836924 46837241 -54543280 - AluSx SINE Alu -11 301 14 2262 113 7 0 chr15 46837249 46837559 -54542962 - AluSx SINE Alu 0 312 1 1846 182 0 0 chr15 46837678 46837974 -54542547 + AluSx SINE Alu 1 296 -16 463 31 31 0 chr15 46837974 46838039 -54542482 + (TA)n Simple_repeat Simple_repeat 1 67 0 1363 209 6 62 chr15 46838160 46838342 -54542179 - AluJb SINE Alu -10 302 144 2352 77 0 3 chr15 46838342 46838629 -54541892 + AluSc SINE Alu 1 286 -23 1363 209 6 62 chr15 46838629 46838766 -54541755 - AluJb SINE Alu -168 144 1 258 156 0 0 chr15 46838949 46838994 -54541527 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 2338 93 3 6 chr15 46839244 46839556 -54540965 - AluY SINE Alu 0 311 1 1578 252 45 49 chr15 46839643 46839748 -54540773 - L1ME LINE L1 -5386 684 580 2310 114 0 0 chr15 46839748 46840055 -54540466 - AluSg SINE Alu -3 307 1 1578 252 45 49 chr15 46840055 46840106 -54540415 - L1ME LINE L1 -5490 580 530 1480 202 39 58 chr15 46840106 46840487 -54540034 + MLT1A2 LTR MaLR 1 374 0 1578 252 45 49 chr15 46840487 46840936 -54539585 - L1ME LINE L1 -5540 530 81 827 153 0 0 chr15 46840959 46841077 -54539444 - FLAM_C SINE Alu -25 118 1 372 235 12 0 chr15 46841079 46841160 -54539361 - L1ME LINE L1 -5977 93 12 902 258 37 12 chr15 46841414 46841658 -54538863 - MIR SINE MIR 0 262 13 2259 120 0 0 chr15 46842152 46842453 -54538068 - AluSq SINE Alu -12 301 1 1087 243 53 48 chr15 46842651 46843066 -54537455 + L1M1 LINE L1 2822 3238 -4327 1091 112 0 0 chr15 46843082 46843225 -54537296 + AluSq/x SINE Alu 1 143 -170 2242 121 0 0 chr15 46843227 46843525 -54536996 + AluSx SINE Alu 3 300 -12 4880 100 25 21 chr15 46843525 46844242 -54536279 + L1PB1 LINE L1 5432 6151 0 5027 127 58 57 chr15 46844245 46844588 -54535933 - Tigger3b DNA MER2_type -2070 958 617 2208 101 37 0 chr15 46844588 46844886 -54535635 - AluSx SINE Alu -3 309 1 5027 127 58 57 chr15 46844886 46845158 -54535363 - Tigger3b DNA MER2_type -2411 617 347 2173 84 17 17 chr15 46845158 46845457 -54535064 + AluY SINE Alu 1 299 -12 5027 127 58 57 chr15 46845457 46845698 -54534823 - Tigger3b DNA MER2_type -2681 347 97 1565 174 37 37 chr15 46845698 46845992 -54534529 - AluJo SINE Alu -18 294 1 5027 127 58 57 chr15 46845992 46846088 -54534433 - Tigger3b DNA MER2_type -2931 97 3 2371 119 54 33 chr15 46846090 46846519 -54534002 + L1MA8 LINE L1 5786 6223 -68 478 230 0 0 chr15 46846534 46846621 -54533900 - AluJ/FLAM SINE Alu -224 88 2 234 128 0 0 chr15 46846679 46846718 -54533803 + (T)n Simple_repeat Simple_repeat 1 39 0 3830 114 13 2 chr15 46846720 46847264 -54533257 - MER41B LTR ERV1 -84 551 2 12122 98 37 26 chr15 46847265 46848057 -54532464 - MER41B-int LTR ERV1 -2 5944 5162 1992 138 27 3 chr15 46848057 46848354 -54532167 - AluSx SINE Alu -8 304 1 12122 98 37 26 chr15 46848354 46848706 -54531815 - MER41B-int LTR ERV1 -784 5162 4815 2095 134 3 7 chr15 46848706 46849013 -54531508 + AluSq SINE Alu 1 306 -7 12122 98 37 26 chr15 46849013 46849769 -54530752 - MER41B-int LTR ERV1 -1131 4815 2393 1968 119 3 20 chr15 46849795 46850090 -54530431 - AluSx SINE Alu -22 290 1 1336 105 90 0 chr15 46850098 46850298 -54530223 - MER41A-int LTR ERV1 -3098 2848 2631 559 152 0 11 chr15 46850291 46850383 -54530138 - MER41A-int LTR ERV1 -3442 2504 2414 * 632 115 23 0 chr15 46850377 46850464 -54530057 - MER41A-int LTR ERV1 -5857 89 1 1037 136 0 0 chr15 46850464 46850619 -54529902 - MER41A LTR ERV1 0 554 400 2186 109 10 0 chr15 46850699 46850992 -54529529 - AluSp SINE Alu -17 296 1 361 167 12 12 chr15 46850992 46851076 -54529445 + CT-rich Low_complexity Low_complexity 3 86 0 1403 153 0 18 chr15 46851082 46851310 -54529211 - AluJb SINE Alu -39 273 50 829 270 104 48 chr15 46851310 46851498 -54529023 - L1M4 LINE L1 -2890 3256 3080 2093 116 7 10 chr15 46851498 46851801 -54528720 - AluSx SINE Alu -10 302 1 829 270 104 48 chr15 46851801 46852103 -54528418 - L1M4 LINE L1 -3066 3080 2796 1797 152 35 0 chr15 46852103 46852392 -54528129 - AluSq SINE Alu -14 299 1 829 270 104 48 chr15 46852392 46852536 -54527985 - L1M4 LINE L1 -3350 2796 2662 1618 174 24 17 chr15 46852536 46852829 -54527692 - AluJb SINE Alu -17 295 1 829 270 104 48 chr15 46852829 46853030 -54527491 - L1M4 LINE L1 -3484 2662 2372 2335 77 0 39 chr15 46853185 46853496 -54527025 - AluSc SINE Alu -10 299 1 1578 192 10 19 chr15 46853518 46853830 -54526691 - AluJb SINE Alu -3 309 1 2178 98 14 3 chr15 46854088 46854383 -54526138 + AluSp SINE Alu 1 298 -15 1907 104 97 0 chr15 46855162 46855441 -54525080 - AluY SINE Alu -5 306 1 1010 125 0 0 chr15 46855441 46855577 -54524944 - AluSq/x SINE Alu -175 137 2 2226 105 7 3 chr15 46856239 46856535 -54523986 + AluSq SINE Alu 1 297 -16 291 276 35 47 chr15 46856537 46856707 -54523814 - L1ME LINE L1 -307 5814 5647 374 148 0 0 chr15 46856863 46856917 -54523604 + Alu SINE Alu 1 54 -246 1326 120 0 11 chr15 46856918 46857109 -54523412 - AluSx SINE Alu -89 223 35 30 83 0 0 chr15 46857152 46857224 -54523297 + AT_rich Low_complexity Low_complexity 1 72 0 214 272 99 12 chr15 46857394 46857475 -54523046 - MIR SINE MIR -95 113 26 2231 108 10 0 chr15 46857549 46857845 -54522676 + AluSx SINE Alu 1 299 -13 2243 99 17 0 chr15 46858295 46858597 -54521924 - AluY SINE Alu -4 307 1 529 279 80 42 chr15 46858606 46858918 -54521603 - L1ME LINE L1 -302 5819 5496 1645 156 25 7 chr15 46858927 46859202 -54521319 - AluJb SINE Alu -15 297 18 2413 77 0 3 chr15 46859210 46859508 -54521013 + AluY SINE Alu 2 298 -13 22 80 0 0 chr15 46859594 46859644 -54520877 + AT_rich Low_complexity Low_complexity 1 50 0 2336 81 3 0 chr15 46860000 46860285 -54520236 - AluSx SINE Alu -26 286 1 1541 162 9 115 chr15 46860691 46861031 -54519490 + AluJb SINE Alu 1 304 -8 997 230 32 81 chr15 46861041 46861305 -54519216 - L1M2 LINE L1 -4250 1966 1691 2017 134 20 13 chr15 46861305 46861611 -54518910 - AluSg SINE Alu -2 308 1 997 230 32 81 chr15 46861611 46861863 -54518658 - L1M2 LINE L1 -4525 1691 1371 2138 133 3 0 chr15 46861864 46862173 -54518348 - AluSg SINE Alu 0 310 1 783 274 91 58 chr15 46862179 46862299 -54518222 - L1ME LINE L1 -5054 1151 1036 2233 100 3 13 chr15 46862299 46862610 -54517911 - AluY SINE Alu -3 308 1 783 274 91 58 chr15 46862610 46862865 -54517656 - L1ME LINE L1 -5169 1036 791 2254 92 14 3 chr15 46862865 46863159 -54517362 - AluSx SINE Alu -15 297 1 783 274 91 58 chr15 46863159 46863838 -54516683 - L1ME LINE L1 -5414 791 102 310 273 0 0 chr15 46863838 46863904 -54516617 - MER77 LTR ERV1 0 605 540 356 213 13 0 chr15 46863951 46864026 -54516495 - L1MEc LINE L1 -2154 4061 3986 848 141 16 0 chr15 46864027 46864155 -54516366 - BC200 scRNA scRNA -67 133 4 1556 154 62 41 chr15 46864155 46864447 -54516074 - AluJb SINE Alu -14 298 1 628 200 9 0 chr15 46864478 46864588 -54515933 - FLAM_A SINE Alu -12 130 20 547 249 37 6 chr15 46864591 46864784 -54515737 - L1MEc LINE L1 -2459 3756 3556 343 121 0 0 chr15 46864784 46864843 -54515678 - Alu SINE Alu -3 299 247 560 189 60 31 chr15 46864858 46864968 -54515553 - L1MEc LINE L1 -2886 3329 3224 2274 107 13 0 chr15 46864968 46865276 -54515245 - AluSx SINE Alu 0 312 1 560 189 60 31 chr15 46865276 46865409 -54515112 - L1MEc LINE L1 -2991 3224 3081 203 0 0 36 chr15 46865411 46865439 -54515082 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1292 103 16 11 chr15 46865446 46865630 -54514891 - AluSc SINE Alu -35 274 90 1241 154 107 74 chr15 46865664 46865963 -54514558 - AluSg SINE Alu 0 310 2 1125 296 44 52 chr15 46865994 46866120 -54514401 - L1MEc LINE L1 -5453 943 817 1704 186 7 0 chr15 46866120 46866421 -54514100 - AluJb SINE Alu -9 303 1 1125 296 44 52 chr15 46866421 46866607 -54513914 - L1MEc LINE L1 -5579 817 631 2159 140 0 0 chr15 46866607 46866915 -54513606 - AluSx SINE Alu -4 308 1 1125 296 44 52 chr15 46866915 46867106 -54513415 - L1MEc LINE L1 -5765 631 440 2355 94 10 3 chr15 46867106 46867415 -54513106 - AluSx SINE Alu -1 311 1 1125 296 44 52 chr15 46867415 46867643 -54512878 - L1MEc LINE L1 -5956 440 216 732 213 10 55 chr15 46867657 46867859 -54512662 - L1ME1 LINE L1 -179 5987 5795 1325 211 23 20 chr15 46867860 46868163 -54512358 - AluJo SINE Alu 0 312 9 30 27 0 0 chr15 46868313 46868350 -54512171 + AT_rich Low_complexity Low_complexity 1 37 0 386 260 65 7 chr15 46868728 46868912 -54511609 - L1MEc LINE L1 -3643 2572 2379 352 190 66 7 chr15 46868973 46869110 -54511411 - L1MEc LINE L1 -4159 2237 2093 704 176 197 0 chr15 46869110 46869252 -54511269 + MER2 DNA MER2_type 1 170 -175 816 153 38 8 chr15 46869253 46869384 -54511137 + AluJo SINE Alu 2 136 -176 768 210 49 6 chr15 46869395 46869557 -54510964 + MER2 DNA MER2_type 176 344 -1 2104 113 13 3 chr15 46869562 46869864 -54510657 - AluY SINE Alu -6 305 1 2162 121 20 0 chr15 46870020 46870326 -54510195 - AluSq SINE Alu -1 312 1 21 36 0 0 chr15 46870755 46870783 -54509738 + AT_rich Low_complexity Low_complexity 1 28 0 2181 100 7 0 chr15 46871548 46871837 -54508684 - AluSg SINE Alu -19 291 1 818 236 103 15 chr15 46872002 46872084 -54508437 + MER58A DNA MER1_type 1 74 -2346 2411 127 16 26 chr15 46872084 46872463 -54508058 - THE1C LTR MaLR 0 375 1 818 236 103 15 chr15 46872463 46872583 -54507938 + MER58A DNA MER1_type 74 221 -3 2229 111 7 0 chr15 46872831 46873129 -54507392 - AluSx SINE Alu -12 300 1 688 251 145 60 chr15 46873192 46873790 -54506731 - L2 LINE L2 -82 3231 2596 1330 212 26 55 chr15 46873823 46874168 -54506353 - MLT1B LTR MaLR 0 390 56 286 235 284 0 chr15 46874168 46874249 -54506272 - MLT1B LTR MaLR -361 106 3 1754 137 6 76 chr15 46874261 46874576 -54505945 + AluJb SINE Alu 1 293 -19 1150 154 166 24 chr15 46875027 46875274 -54505247 + AluJo SINE Alu 23 304 -8 23 78 0 0 chr15 46875582 46875633 -54504888 + AT_rich Low_complexity Low_complexity 1 51 0 1916 128 25 0 chr15 46875867 46876141 -54504380 + AluSx SINE Alu 1 281 -31 270 0 0 0 chr15 46876141 46876171 -54504350 + (CATA)n Simple_repeat Simple_repeat 1 30 0 305 264 212 35 chr15 46876353 46876529 -54503992 - L2 LINE L2 -337 2977 2833 2209 89 3 7 chr15 46876529 46876831 -54503690 - AluSc SINE Alu -8 301 1 305 264 212 35 chr15 46876831 46877051 -54503470 - L2 LINE L2 -481 2833 2511 305 314 0 38 chr15 46877651 46877810 -54502711 + C-rich Low_complexity Low_complexity 4 156 0 2511 71 0 3 chr15 46879129 46879438 -54501083 - AluSg SINE Alu -2 308 1 932 102 8 0 chr15 46879479 46879606 -54500915 + L1MA1 LINE L1 6166 6293 -9 2399 89 3 0 chr15 46879839 46880141 -54500380 + AluSp SINE Alu 2 304 -9 2194 114 3 0 chr15 46880839 46881136 -54499385 + AluSg SINE Alu 2 299 -11 21 0 0 0 chr15 46881266 46881287 -54499234 + AT_rich Low_complexity Low_complexity 1 21 0 336 203 0 0 chr15 46881819 46881883 -54498638 - MIR3 SINE MIR -25 183 120 2859 3 0 3 chr15 46881887 46882196 -54498325 + AluYa8 SINE Alu 1 308 -2 23 68 0 0 chr15 46882453 46882497 -54498024 + AT_rich Low_complexity Low_complexity 1 44 0 2420 59 3 0 chr15 46882906 46883195 -54497326 - AluY SINE Alu -21 290 1 2343 75 10 0 chr15 46884204 46884496 -54496025 + AluSg SINE Alu 1 295 -15 2166 103 3 13 chr15 46884530 46884831 -54495690 + AluY SINE Alu 1 298 -13 2228 90 13 19 chr15 46885288 46885600 -54494921 + AluSg SINE Alu 1 310 0 259 114 0 0 chr15 46886042 46886077 -54494444 + tRNA-Met-e tRNA tRNA 1 35 -40 2415 72 0 7 chr15 46886985 46887290 -54493231 - AluSq SINE Alu -10 303 1 232 87 0 43 chr15 46888406 46888452 -54492069 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 2218 92 3 23 chr15 46888458 46888762 -54491759 - AluSg SINE Alu -12 298 1 2476 68 0 0 chr15 46889047 46889343 -54491178 - AluSg SINE Alu -14 296 1 1074 113 0 0 chr15 46889344 46889486 -54491035 - AluSq/x SINE Alu -171 142 1 2256 110 10 0 chr15 46890273 46890573 -54489948 - AluY SINE Alu -8 303 1 1503 114 82 28 chr15 46891018 46891273 -54489248 - AluSq SINE Alu -20 293 25 2159 108 3 3 chr15 46891295 46891591 -54488930 - AluSx SINE Alu -16 296 1 634 118 191 18 chr15 46891598 46891708 -54488813 - FLAM_C SINE Alu -4 139 11 2186 89 10 0 chr15 46891729 46892022 -54488499 - AluSp SINE Alu -15 298 3 273 329 119 19 chr15 46892124 46892334 -54488187 - L2 LINE L2 -527 2787 2557 749 130 113 0 chr15 46893039 46893154 -54487367 + AluSg1 SINE Alu 2 129 -180 1605 151 16 30 chr15 46893158 46893462 -54487059 + AluSx SINE Alu 1 300 -12 849 132 35 0 chr15 46893653 46893767 -54486754 + FLAM_C SINE Alu 1 118 -15 2311 63 3 72 chr15 46894174 46894492 -54486029 - AluSc SINE Alu -13 296 1 22 70 0 0 chr15 46894629 46894672 -54485849 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr15 46895145 46895175 -54485346 + AT_rich Low_complexity Low_complexity 1 30 0 769 174 16 0 chr15 46895448 46895569 -54484952 - FAM SINE Alu -19 166 44 318 50 0 0 chr15 46895700 46895740 -54484781 + (TA)n Simple_repeat Simple_repeat 2 41 0 2581 66 0 0 chr15 46895740 46896043 -54484478 - AluSg SINE Alu -7 303 1 1102 60 8 0 chr15 46896077 46896211 -54484310 + L1MA1 LINE L1 6159 6293 -9 2399 89 3 0 chr15 46896444 46896746 -54483775 + AluSp SINE Alu 2 304 -9 2194 114 3 0 chr15 46897444 46897741 -54482780 + AluSg SINE Alu 2 299 -11 21 0 0 0 chr15 46897871 46897892 -54482629 + AT_rich Low_complexity Low_complexity 1 21 0 336 203 0 0 chr15 46898424 46898488 -54482033 - MIR3 SINE MIR -25 183 120 2894 3 0 0 chr15 46898492 46898800 -54481721 + AluYa8 SINE Alu 1 308 -2 23 68 0 0 chr15 46899057 46899101 -54481420 + AT_rich Low_complexity Low_complexity 1 44 0 2420 59 3 0 chr15 46899510 46899799 -54480722 - AluY SINE Alu -21 290 1 2343 75 10 0 chr15 46900808 46901100 -54479421 + AluSg SINE Alu 1 295 -15 2166 103 3 13 chr15 46901134 46901435 -54479086 + AluY SINE Alu 1 298 -13 2228 90 13 19 chr15 46901892 46902204 -54478317 + AluSg SINE Alu 1 310 0 259 114 0 0 chr15 46902646 46902681 -54477840 + tRNA-Met-e tRNA tRNA 1 35 -40 1444 157 0 39 chr15 46903705 46904010 -54476511 - AluY SINE Alu -18 293 1 1665 81 0 18 chr15 46904010 46904231 -54476290 - AluSg/x SINE Alu -11 299 83 2526 51 0 0 chr15 46904635 46904931 -54475590 + AluY SINE Alu 1 296 -15 197 279 47 81 chr15 46905192 46905278 -54475243 + MIR3 SINE MIR 103 185 -23 718 164 0 0 chr15 46905297 46905413 -54475108 - FLAM_C SINE Alu -17 116 1 2386 77 13 3 chr15 46905638 46905938 -54474583 - AluY SINE Alu -8 303 1 324 140 105 0 chr15 46906034 46906091 -54474430 + MER5A DNA MER1_type 9 71 -118 734 181 0 0 chr15 46906097 46906213 -54474308 + FLAM_C SINE Alu 1 116 -17 647 179 103 0 chr15 46906234 46906351 -54474170 - MER5A DNA MER1_type 0 189 61 1798 162 3 25 chr15 46906360 46906674 -54473847 - AluJb SINE Alu -1 311 5 2218 102 0 3 chr15 46906686 46906979 -54473542 - AluSc SINE Alu -17 292 1 2091 90 4 0 chr15 46907005 46907283 -54473238 - AluSp SINE Alu -1 312 34 690 181 0 7 chr15 46907443 46907592 -54472929 - L1MB8 LINE L1 0 6178 6031 1704 179 25 0 chr15 46907594 46907912 -54472609 + L1MC1 LINE L1 6008 6333 0 2407 100 0 0 chr15 46907922 46908231 -54472290 + AluSx SINE Alu 3 311 -1 342 327 157 18 chr15 46908357 46908574 -54471947 - MIR SINE MIR -11 251 5 248 204 133 10 chr15 46908931 46909029 -54471492 - L1MB8 LINE L1 -2051 5757 5648 262 342 93 0 chr15 46909101 46909262 -54471259 + L1MC4 LINE L1 6743 6918 -1124 2238 124 0 9 chr15 46909266 46909581 -54470940 - AluSx SINE Alu 0 312 1 975 98 0 0 chr15 46909581 46909704 -54470817 - AluSq/x SINE Alu -177 136 14 716 252 93 70 chr15 46909710 46909887 -54470634 + L1MC4 LINE L1 6936 7107 -935 2191 105 6 16 chr15 46909887 46910201 -54470320 + AluSq SINE Alu 1 311 -2 716 252 93 70 chr15 46910201 46910570 -54469951 + L1MC4 LINE L1 7107 7495 -547 239 313 0 60 chr15 46910626 46910709 -54469812 + MIR3 SINE MIR 82 159 -49 362 225 0 0 chr15 46911026 46911106 -54469415 - MER116 DNA Mariner 0 80 1 1909 123 82 0 chr15 46911638 46911906 -54468615 + AluSg SINE Alu 1 290 -20 2371 82 3 0 chr15 46912432 46912725 -54467796 + AluY SINE Alu 1 294 -17 643 235 0 22 chr15 46912735 46912871 -54467650 + FLAM_C SINE Alu 1 133 0 226 120 0 20 chr15 46913539 46913589 -54466932 - LTR66 LTR ERVL -164 446 398 2335 106 0 3 chr15 46915050 46915353 -54465168 + AluSx SINE Alu 1 302 -10 1898 148 13 0 chr15 46915551 46915856 -54464665 - AluSc SINE Alu 0 309 1 30 0 0 24 chr15 46915928 46915953 -54464568 + AT_rich Low_complexity Low_complexity 1 26 -14 2131 125 0 0 chr15 46915953 46916242 -54464279 - AluSx SINE Alu -23 289 1 30 0 0 24 chr15 46916242 46916257 -54464264 + AT_rich Low_complexity Low_complexity 26 40 0 1084 176 68 15 chr15 46916257 46916462 -54464059 + AluJo SINE Alu 85 300 -12 575 76 19 95 chr15 46916483 46916561 -54463960 + AluJb SINE Alu 38 108 -204 1996 142 3 0 chr15 46916561 46916856 -54463665 + AluSx SINE Alu 1 296 -16 575 76 19 95 chr15 46916856 46916882 -54463639 + AluJb SINE Alu 108 134 -178 2278 103 0 13 chr15 46917817 46918117 -54462404 - AluSx SINE Alu -15 297 2 491 176 90 95 chr15 46918302 46918364 -54462157 - MER5A DNA MER1_type -1 188 127 1862 181 3 7 chr15 46918364 46918673 -54461848 + AluJo SINE Alu 1 308 -4 491 176 90 95 chr15 46918673 46918728 -54461793 - MER5A DNA MER1_type -62 127 73 2117 119 3 0 chr15 46918728 46919021 -54461500 - AluSx SINE Alu -18 294 1 491 176 90 95 chr15 46919021 46919088 -54461433 - MER5A DNA MER1_type -116 73 4 1978 109 72 0 chr15 46919607 46919883 -54460638 - AluSq SINE Alu -17 296 1 2136 114 10 7 chr15 46920026 46920325 -54460196 - AluSx SINE Alu -11 301 2 59 38 0 0 chr15 46920637 46920717 -54459804 + AT_rich Low_complexity Low_complexity 1 80 0 2006 112 14 3 chr15 46921103 46921388 -54459133 + AluSx SINE Alu 1 288 -24 2525 81 7 0 chr15 46921554 46921864 -54458657 - AluSp SINE Alu -1 312 1 39 0 0 0 chr15 46922041 46922080 -54458441 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr15 46922448 46922473 -54458048 + AT_rich Low_complexity Low_complexity 1 25 0 2391 108 0 0 chr15 46922533 46922840 -54457681 + AluSp SINE Alu 2 308 -5 2312 111 0 0 chr15 46923446 46923744 -54456777 - AluSx SINE Alu -14 298 1 1020 110 12 61 chr15 46923810 46923973 -54456548 - AluSg/x SINE Alu -21 291 137 294 246 82 62 chr15 46924021 46924216 -54456305 - AluSq SINE Alu -103 200 2 506 173 75 8 chr15 46924252 46924385 -54456136 + AluSq/x SINE Alu 2 143 -170 1941 124 3 13 chr15 46924619 46924925 -54455596 - AluSg SINE Alu -7 303 1 2348 84 0 0 chr15 46924931 46925229 -54455292 - AluY SINE Alu -1 310 13 2275 107 3 3 chr15 46925277 46925587 -54454934 - AluY SINE Alu -1 310 1 22 35 0 0 chr15 46925631 46925660 -54454861 + AT_rich Low_complexity Low_complexity 1 29 0 2031 121 0 21 chr15 46926269 46926586 -54453935 - AluSx SINE Alu 0 311 1 359 365 84 0 chr15 46926672 46926910 -54453611 + L1MC4a LINE L1 5476 5733 -2075 308 295 67 0 chr15 46926996 46927101 -54453420 + L1MC4a LINE L1 5852 5963 -1845 1946 139 36 0 chr15 46928300 46928601 -54451920 - AluSx SINE Alu 0 312 1 205 208 26 0 chr15 46928963 46929040 -54451481 + (TA)n Simple_repeat Simple_repeat 2 80 0 267 152 0 0 chr15 46929248 46929294 -54451227 + (TATG)n Simple_repeat Simple_repeat 3 48 0 1757 171 31 0 chr15 46929496 46929783 -54450738 + AluJb SINE Alu 1 296 -16 977 153 19 6 chr15 46929783 46929940 -54450581 + AluJo/FRAM SINE Alu 134 292 -20 2154 126 7 0 chr15 46930461 46930763 -54449758 + AluSx SINE Alu 1 304 -8 338 264 80 16 chr15 46930808 46930933 -54449588 - MIR SINE MIR -26 236 104 301 286 43 36 chr15 46930945 46931085 -54449436 + L1ME4a LINE L1 5270 5410 -2398 1526 204 0 0 chr15 46931085 46931354 -54449167 + AluJb SINE Alu 36 304 -8 290 245 41 10 chr15 46931440 46931538 -54448983 + L1ME4a LINE L1 5586 5686 -435 482 298 128 25 chr15 46931540 46931899 -54448622 + L1ME4a LINE L1 5721 6116 -5 1646 168 20 14 chr15 46932018 46932310 -54448211 + AluJo SINE Alu 2 295 -17 1068 297 202 9 chr15 46932753 46933506 -54447015 + L2 LINE L2 2367 3306 -7 317 295 31 61 chr15 46933602 46933863 -54446658 + L1ME4a LINE L1 5869 6121 0 645 228 148 10 chr15 46934252 46934555 -54445966 - MER20B DNA MER1_type 0 783 439 1024 200 120 47 chr15 46934922 46935197 -54445324 + AluJo SINE Alu 1 295 -7 945 295 97 8 chr15 46935588 46935978 -54444543 - MER20B DNA MER1_type -291 492 68 189 107 0 0 chr15 46936805 46936833 -54443688 + (T)n Simple_repeat Simple_repeat 1 28 0 2293 96 7 0 chr15 46937189 46937491 -54443030 - AluSc SINE Alu -5 304 1 2276 124 0 0 chr15 46937712 46938019 -54442502 - AluSx SINE Alu -5 307 1 22 0 0 0 chr15 46938160 46938182 -54442339 + AT_rich Low_complexity Low_complexity 1 22 0 1265 174 71 123 chr15 46938312 46938565 -54441956 - Charlie1b DNA MER1_type -2238 523 312 2091 123 3 0 chr15 46938565 46938874 -54441647 - AluSq SINE Alu 0 310 1 1265 174 71 123 chr15 46938874 46939171 -54441350 - Charlie1b DNA MER1_type -2449 312 1 24 32 0 0 chr15 46939182 46939213 -54441308 + AT_rich Low_complexity Low_complexity 1 31 0 1899 31 9 4 chr15 46939440 46939666 -54440855 - AluY SINE Alu -2 309 83 2219 101 0 13 chr15 46939668 46939976 -54440545 - AluSp SINE Alu -9 304 1 1544 94 21 39 chr15 46940200 46940434 -54440087 + MER30 DNA MER1_type 1 230 0 28 71 0 0 chr15 46940912 46940968 -54439553 + AT_rich Low_complexity Low_complexity 1 56 0 1967 153 0 7 chr15 46941103 46941410 -54439111 + AluJb SINE Alu 1 305 -7 1787 160 44 15 chr15 46941657 46941995 -54438526 + L1PB4 LINE L1 5802 6149 -7 2304 60 0 0 chr15 46942009 46942306 -54438215 - AluY SINE Alu 0 311 15 1340 185 10 36 chr15 46942650 46942952 -54437569 + AluJo SINE Alu 1 294 -18 1132 119 0 6 chr15 46943093 46943253 -54437268 - AluSq SINE Alu -19 294 136 1848 129 56 3 chr15 46943255 46943421 -54437100 - AluSx SINE Alu -11 301 112 287 24 0 24 chr15 46943421 46943462 -54437059 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1848 129 56 3 chr15 46943462 46943581 -54436940 - AluSx SINE Alu -200 112 1 685 166 53 152 chr15 46943598 46943672 -54436849 - L1MB7 LINE L1 -11 6173 6093 1595 151 0 9 chr15 46943672 46943904 -54436617 + AluSx SINE Alu 64 293 -19 685 166 53 152 chr15 46943904 46944112 -54436409 - L1MB7 LINE L1 -91 6093 5919 1760 119 0 0 chr15 46944685 46944921 -54435600 - AluSq SINE Alu -23 290 55 1492 137 26 36 chr15 46945398 46945704 -54434817 - AluSq SINE Alu -10 303 1 2232 117 7 7 chr15 46945901 46946209 -54434312 - AluSx SINE Alu -4 308 1 21 0 0 0 chr15 46946886 46946907 -54433614 + AT_rich Low_complexity Low_complexity 1 21 0 2270 93 3 7 chr15 46947068 46947370 -54433151 - AluSc SINE Alu -7 302 2 27 29 0 0 chr15 46948173 46948207 -54432314 + AT_rich Low_complexity Low_complexity 1 34 0 1320 184 0 0 chr15 46948287 46948499 -54432022 + AluJb SINE Alu 86 297 -15 22 0 0 0 chr15 46950949 46950971 -54429550 + AT_rich Low_complexity Low_complexity 1 22 0 2305 108 16 0 chr15 46952614 46952921 -54427600 - AluSx SINE Alu 0 312 1 221 272 99 12 chr15 46952995 46953076 -54427445 + MIR SINE MIR 26 113 -95 30 83 0 0 chr15 46953251 46953323 -54427198 + AT_rich Low_complexity Low_complexity 1 72 0 1330 120 0 11 chr15 46953366 46953557 -54426964 + AluSx SINE Alu 35 223 -89 356 148 0 0 chr15 46953558 46953612 -54426909 - Alu SINE Alu -248 54 1 271 259 32 51 chr15 46953771 46953929 -54426592 + L1ME4a LINE L1 5650 5804 -317 2044 125 7 7 chr15 46953940 46954237 -54426284 - AluSq SINE Alu -16 297 1 21 0 0 0 chr15 46954608 46954629 -54425892 + AT_rich Low_complexity Low_complexity 1 21 0 1613 129 0 21 chr15 46954681 46954921 -54425600 - AluSx SINE Alu -77 235 1 259 261 68 0 chr15 46955453 46955541 -54424980 - L1ME LINE L1 -412 5709 5616 28 48 0 0 chr15 46955588 46955630 -54424891 + AT_rich Low_complexity Low_complexity 1 42 0 347 181 105 38 chr15 46955700 46955805 -54424716 + L1ME4a LINE L1 5977 6088 -33 2250 134 0 0 chr15 46955811 46956118 -54424403 - AluSx SINE Alu -5 307 1 23 33 0 0 chr15 46956125 46956155 -54424366 + AT_rich Low_complexity Low_complexity 1 30 0 516 313 138 67 chr15 46956446 46956787 -54423734 + L2 LINE L2 2216 2531 -741 1723 162 13 16 chr15 46956787 46957096 -54423425 - AluJb SINE Alu -4 308 1 516 313 138 67 chr15 46957096 46957592 -54422929 + L2 LINE L2 2531 3158 -114 2490 45 0 19 chr15 46957592 46957900 -54422621 - AluY SINE Alu -9 302 1 516 313 138 67 chr15 46957900 46958024 -54422497 + L2 LINE L2 3158 3272 0 2407 65 3 3 chr15 46958876 46959168 -54421353 - AluSq SINE Alu -21 292 1 2365 88 7 3 chr15 46960136 46960442 -54420079 - AluSp SINE Alu -6 307 1 256 275 69 4 chr15 46960472 46960595 -54419926 - MIR SINE MIR -6 202 72 2006 130 14 0 chr15 46960672 46960957 -54419564 - AluSx SINE Alu -23 289 1 1624 186 6 38 chr15 46961042 46961231 -54419290 - AluJo SINE Alu 0 312 135 2305 91 0 10 chr15 46961231 46961529 -54418992 - AluSc SINE Alu -14 295 1 1624 186 6 38 chr15 46961529 46961657 -54418864 - AluJo SINE Alu -177 135 5 315 313 17 26 chr15 46961965 46962080 -54418441 - L1ME4a LINE L1 -222 5899 5786 2215 96 3 3 chr15 46962086 46962378 -54418143 - AluSg SINE Alu -18 292 1 22 35 0 0 chr15 46962389 46962418 -54418103 + AT_rich Low_complexity Low_complexity 1 29 0 3168 129 17 15 chr15 46962419 46963096 -54417425 + L1M2 LINE L1 5130 5809 -482 2115 138 7 0 chr15 46963101 46963399 -54417122 - AluSx SINE Alu -12 300 1 747 188 83 0 chr15 46963410 46963543 -54416978 - FRAM SINE Alu -14 162 19 2354 83 3 13 chr15 46963919 46964233 -54416288 + AluY SINE Alu 1 311 0 317 0 70 0 chr15 46964954 46964997 -54415524 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2232 82 3 40 chr15 46965050 46965354 -54415167 - AluSx SINE Alu -19 293 1 2417 83 0 10 chr15 46967957 46968269 -54412252 - AluY SINE Alu -2 309 1 2076 111 3 49 chr15 46968274 46968441 -54412080 - AluSx SINE Alu -19 293 145 2373 84 3 0 chr15 46968441 46968737 -54411784 - AluSx SINE Alu -15 297 1 2076 111 3 49 chr15 46968737 46968876 -54411645 - AluSx SINE Alu -167 145 1 1316 191 0 4 chr15 46969045 46969270 -54411251 + AluJb SINE Alu 85 308 -4 654 182 78 52 chr15 46969478 46969632 -54410889 + FRAM SINE Alu 1 158 -8 281 260 154 16 chr15 46970140 46970263 -54410258 - MIR3 SINE MIR -58 150 11 21 71 0 0 chr15 46970739 46970781 -54409740 + AT_rich Low_complexity Low_complexity 1 42 0 2306 100 0 3 chr15 46970888 46971189 -54409332 + AluSg SINE Alu 1 300 -10 2275 113 0 19 chr15 46971269 46971587 -54408934 + AluSx SINE Alu 1 312 0 719 186 0 8 chr15 46971595 46971719 -54408802 + FLAM_C SINE Alu 1 123 -20 1021 169 46 18 chr15 46971736 46971955 -54408566 + L1PB4 LINE L1 5932 6156 0 534 246 56 15 chr15 46971980 46972175 -54408346 + L1ME1 LINE L1 5959 6161 -5 1143 148 0 12 chr15 46972419 46972588 -54407933 - AluSg/x SINE Alu -18 292 126 560 199 15 0 chr15 46972996 46973127 -54407394 - L1MC4a LINE L1 -1813 5995 5863 * 4877 139 50 48 chr15 46973124 46974454 -54406067 + L1MA3 LINE L1 4976 6305 0 2152 110 10 7 chr15 46974528 46974829 -54405692 - AluSp SINE Alu -10 303 2 592 231 47 6 chr15 46974830 46974999 -54405522 - L1ME1 LINE L1 -261 5905 5730 186 43 0 0 chr15 46975003 46975026 -54405495 + (TC)n Simple_repeat Simple_repeat 1 23 0 283 241 72 0 chr15 46975026 46975109 -54405412 - L1MC4a LINE L1 -1948 5860 5772 435 119 0 0 chr15 46975125 46975192 -54405329 + (CA)n Simple_repeat Simple_repeat 2 68 0 2288 41 0 58 chr15 46975194 46975485 -54405036 - AluSp SINE Alu -23 290 17 949 123 0 12 chr15 46975990 46976153 -54404368 + MER3 DNA MER1_type 8 168 -41 1889 135 20 33 chr15 46976532 46976836 -54403685 - AluSx SINE Alu -12 300 1 2108 137 0 0 chr15 46977085 46977377 -54403144 - AluSx SINE Alu -20 292 1 232 87 0 43 chr15 46977844 46977890 -54402631 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 2217 92 3 23 chr15 46977896 46978200 -54402321 - AluSg SINE Alu -12 298 1 182 278 111 0 chr15 46978237 46978291 -54402230 - MIR3 SINE MIR -54 154 95 2356 95 7 0 chr15 46978485 46978780 -54401741 - AluSx SINE Alu -14 298 2 816 267 51 5 chr15 46979107 46979302 -54401219 - MIR SINE MIR -49 213 10 2163 131 3 6 chr15 46979566 46979879 -54400642 + AluSx SINE Alu 1 312 0 317 0 70 0 chr15 46980600 46980643 -54399878 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2232 82 3 40 chr15 46980696 46981000 -54399521 - AluSx SINE Alu -19 293 1 2417 83 0 10 chr15 46983602 46983914 -54396607 - AluY SINE Alu -2 309 1 2076 111 3 49 chr15 46983919 46984086 -54396435 - AluSx SINE Alu -19 293 145 2373 84 3 0 chr15 46984086 46984382 -54396139 - AluSx SINE Alu -15 297 1 2076 111 3 49 chr15 46984382 46984521 -54396000 - AluSx SINE Alu -167 145 1 1316 191 0 4 chr15 46984689 46984914 -54395607 + AluJb SINE Alu 85 308 -4 654 182 78 52 chr15 46985122 46985276 -54395245 + FRAM SINE Alu 1 158 -8 281 260 154 16 chr15 46985784 46985907 -54394614 - MIR3 SINE MIR -58 150 11 21 71 0 0 chr15 46986383 46986425 -54394096 + AT_rich Low_complexity Low_complexity 1 42 0 2306 100 0 3 chr15 46986532 46986833 -54393688 + AluSg SINE Alu 1 300 -10 2275 113 0 19 chr15 46986913 46987231 -54393290 + AluSx SINE Alu 1 312 0 719 186 0 8 chr15 46987239 46987363 -54393158 + FLAM_C SINE Alu 1 123 -20 1021 169 46 18 chr15 46987380 46987599 -54392922 + L1PB4 LINE L1 5932 6156 0 534 246 56 15 chr15 46987623 46987818 -54392703 + L1ME1 LINE L1 5959 6161 -5 1143 148 0 12 chr15 46988062 46988231 -54392290 - AluSg/x SINE Alu -18 294 128 560 199 15 0 chr15 46988639 46988770 -54391751 - L1MC4a LINE L1 -1813 5995 5863 * 4877 139 50 48 chr15 46988767 46990097 -54390424 + L1MA3 LINE L1 4976 6305 0 2152 110 10 7 chr15 46990171 46990472 -54390049 - AluSp SINE Alu -10 303 2 592 231 47 6 chr15 46990473 46990642 -54389879 - L1ME1 LINE L1 -261 5905 5730 186 43 0 0 chr15 46990646 46990669 -54389852 + (TC)n Simple_repeat Simple_repeat 1 23 0 283 241 72 0 chr15 46990669 46990752 -54389769 - L1MC4a LINE L1 -1948 5860 5772 435 119 0 0 chr15 46990768 46990835 -54389686 + (CA)n Simple_repeat Simple_repeat 2 68 0 2288 41 0 58 chr15 46990837 46991128 -54389393 - AluSp SINE Alu -23 290 17 949 123 0 12 chr15 46991633 46991796 -54388725 + MER3 DNA MER1_type 8 168 -41 1889 135 20 33 chr15 46992175 46992479 -54388042 - AluSx SINE Alu -12 300 1 1377 132 0 0 chr15 46992728 46992917 -54387604 - AluSg/x SINE Alu -20 292 104 2068 87 11 4 chr15 46993028 46993303 -54387218 + AluSx SINE Alu 22 298 -14 316 330 28 17 chr15 46993327 46993355 -54387166 - L1MEc LINE L1 -4343 2053 2027 1603 172 72 24 chr15 46993355 46993687 -54386834 - MER7A DNA MER2_type 0 346 1 316 330 28 17 chr15 46993687 46993834 -54386687 - L1MEc LINE L1 -4369 2027 1876 876 136 0 0 chr15 46993859 46993977 -54386544 + FLAM_C SINE Alu 6 123 -20 1806 141 4 0 chr15 46994224 46994493 -54386028 - AluSx SINE Alu -42 270 1 252 174 22 0 chr15 46994530 46994576 -54385945 - MER5A DNA MER1_type -121 68 22 333 172 0 0 chr15 46994790 46994848 -54385673 - AluS SINE Alu -249 59 2 370 211 59 0 chr15 46994865 46994964 -54385557 - L1M4 LINE L1 -3288 2858 2755 277 263 8 8 chr15 46994964 46995082 -54385439 + AluSc SINE Alu 1 118 -181 2133 106 6 44 chr15 46995459 46995819 -54384702 + L1MA7 LINE L1 5945 6290 -1 673 117 0 0 chr15 46995965 46996059 -54384462 + AluSg/x SINE Alu 196 289 -21 811 188 77 22 chr15 46996099 46996379 -54384142 - L1M LINE L1 -737 5429 5140 2306 114 3 0 chr15 46996400 46996706 -54383815 - AluSg SINE Alu -3 307 1 1554 147 41 75 chr15 46996717 46996878 -54383643 - AluJo SINE Alu -14 298 133 2195 101 7 0 chr15 46996878 46997176 -54383345 - AluSg SINE Alu -10 300 1 2292 96 0 3 chr15 46997183 46997484 -54383037 - AluSg SINE Alu -10 300 1 1554 147 41 75 chr15 46997484 46997607 -54382914 - AluJo SINE Alu -185 127 16 1283 221 68 46 chr15 46998174 46998717 -54381804 - L1M4 LINE L1 -3418 2728 2174 1420 152 70 0 chr15 46998728 46998985 -54381536 + AluSx SINE Alu 19 293 -19 260 267 40 0 chr15 46999144 46999294 -54381227 + (TA)n Simple_repeat Simple_repeat 2 157 0 209 238 0 0 chr15 46999315 46999357 -54381164 + T-rich Low_complexity Low_complexity 1 42 0 646 255 43 0 chr15 46999491 46999675 -54380846 + L2 LINE L2 3122 3313 0 2399 84 0 3 chr15 46999784 47000083 -54380438 + AluSp SINE Alu 1 298 -15 186 133 0 0 chr15 47000117 47000147 -54380374 + (T)n Simple_repeat Simple_repeat 1 30 0 201 121 0 0 chr15 47001423 47001456 -54379065 + (T)n Simple_repeat Simple_repeat 1 33 0 1874 114 0 4 chr15 47001944 47002199 -54378322 - AluSg SINE Alu -7 303 50 782 274 18 53 chr15 47002204 47002430 -54378091 - MIR SINE MIR -8 254 37 342 0 0 0 chr15 47002444 47002482 -54378039 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1961 153 0 29 chr15 47002491 47002629 -54377892 + AluJb SINE Alu 5 146 -166 2287 89 7 3 chr15 47002629 47002921 -54377600 + AluSg SINE Alu 1 293 -17 1961 153 0 29 chr15 47002921 47003089 -54377432 + AluJb SINE Alu 146 302 -10 947 164 0 31 chr15 47003096 47003255 -54377266 - AluJo SINE Alu -39 273 120 2002 171 0 0 chr15 47003257 47003567 -54376954 - AluSx SINE Alu 0 312 3 838 196 0 20 chr15 47003570 47003718 -54376803 - AluJo SINE Alu -167 145 1 2229 97 7 3 chr15 47004036 47004325 -54376196 + AluSx SINE Alu 1 290 -22 189 264 9 142 chr15 47004500 47004606 -54375915 + L2 LINE L2 3088 3179 -93 524 210 192 58 chr15 47005393 47005438 -54375083 - L1MC5 LINE L1 -390 7571 7533 1822 137 48 20 chr15 47005438 47005731 -54374790 - AluSx SINE Alu -11 301 1 524 210 192 58 chr15 47005731 47006028 -54374493 - L1MC5 LINE L1 -428 7533 7183 708 210 54 38 chr15 47006029 47006215 -54374306 + Charlie1a DNA MER1_type 1 189 -1266 363 204 82 31 chr15 47006210 47006308 -54374213 + Charlie1a DNA MER1_type 632 734 -721 * 2312 88 3 0 chr15 47006314 47006619 -54373902 - AluSq SINE Alu -7 306 1 253 27 0 27 chr15 47007559 47007596 -54372925 + AluYa5 SINE Alu 163 198 -103 259 227 0 0 chr15 47007604 47007679 -54372842 + L1M4 LINE L1 5279 5353 -821 271 137 0 20 chr15 47007700 47007751 -54372770 + L1M4 LINE L1 5783 5832 -346 795 132 0 76 chr15 47008349 47008493 -54372028 + FLAM_C SINE Alu 1 133 0 226 315 157 0 chr15 47008561 47008669 -54371852 + L2 LINE L2 3189 3313 0 1681 153 45 11 chr15 47008699 47008986 -54371535 - AluJb SINE Alu -15 297 1 2194 124 10 0 chr15 47009129 47009435 -54371086 + AluJb SINE Alu 1 309 -3 212 130 43 0 chr15 47009668 47009714 -54370807 + T-rich Low_complexity Low_complexity 2 49 0 657 208 23 8 chr15 47009716 47009846 -54370675 - FLAM_C SINE Alu -1 132 1 25 0 0 0 chr15 47010171 47010196 -54370325 + AT_rich Low_complexity Low_complexity 1 25 0 577 244 8 0 chr15 47010297 47010416 -54370105 + FLAM_A SINE Alu 1 120 -13 3194 200 66 101 chr15 47010648 47011160 -54369361 + L1MC4 LINE L1 6459 6988 -1054 1666 157 30 13 chr15 47011160 47011459 -54369062 + AluJb SINE Alu 1 304 -8 3194 200 66 101 chr15 47011459 47011477 -54369044 + L1MC4 LINE L1 6988 7005 -1037 2082 60 152 0 chr15 47011477 47011779 -54368742 + L1PA7 LINE L1 5806 6153 -1 3194 200 66 101 chr15 47011779 47011863 -54368658 + L1MC4 LINE L1 7005 7090 -952 1841 141 20 10 chr15 47011863 47012160 -54368361 + AluJb SINE Alu 1 300 -12 3194 200 66 101 chr15 47012160 47012786 -54367735 + L1MC4 LINE L1 7090 7657 -385 1896 146 7 14 chr15 47012804 47013119 -54367402 - AluSx SINE Alu 0 312 1 1031 174 22 27 chr15 47013126 47013310 -54367211 - AluJ SINE Alu -22 290 108 191 62 62 0 chr15 47013320 47013352 -54367169 + G-rich Low_complexity Low_complexity 3 36 0 744 140 0 0 chr15 47013356 47013463 -54367058 - AluJ SINE Alu -205 107 1 335 271 75 21 chr15 47013534 47013774 -54366747 + L1M4 LINE L1 3712 3964 -2182 348 285 82 59 chr15 47013782 47014038 -54366483 + L1M4 LINE L1 4024 4285 -1861 889 121 7 43 chr15 47014038 47014179 -54366342 + AluJo SINE Alu 1 136 -176 2352 68 13 10 chr15 47014650 47014960 -54365561 - AluY SINE Alu 0 311 1 878 210 42 92 chr15 47014971 47015328 -54365193 - L1MC4 LINE L1 -17 8025 7687 478 299 136 6 chr15 47016528 47016705 -54363816 - MIR SINE MIR -43 219 20 267 298 12 0 chr15 47016716 47016800 -54363721 + (TA)n Simple_repeat Simple_repeat 1 85 0 235 140 0 35 chr15 47016833 47016890 -54363631 + (TA)n Simple_repeat Simple_repeat 1 55 0 393 246 62 39 chr15 47017060 47017190 -54363331 + MIR SINE MIR 128 260 -2 29 0 0 0 chr15 47017192 47017221 -54363300 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr15 47017325 47017354 -54363167 + AT_rich Low_complexity Low_complexity 1 29 0 823 144 0 0 chr15 47017358 47017476 -54363045 - FLAM_C SINE Alu -25 118 1 1968 97 0 117 chr15 47018033 47018385 -54362136 - AluSx SINE Alu 0 312 2 795 190 13 32 chr15 47018389 47018547 -54361974 - AluJb SINE Alu -18 294 140 227 211 154 0 chr15 47018904 47018956 -54361565 - L2 LINE L2 -1 3312 3253 229 309 31 10 chr15 47018997 47019094 -54361427 - MER5A DNA MER1_type -2 187 89 2313 115 0 0 chr15 47019643 47019955 -54360566 + AluSx SINE Alu 1 312 0 517 180 125 47 chr15 47020369 47020497 -54360024 - FLAM_C SINE Alu -5 138 1 1295 169 0 5 chr15 47020901 47021108 -54359413 - AluJb SINE Alu -14 298 93 2079 131 0 0 chr15 47021506 47021811 -54358710 + AluSx SINE Alu 1 305 0 2193 90 7 0 chr15 47022716 47023005 -54357516 + AluSc SINE Alu 1 291 -18 365 175 0 16 chr15 47023064 47023127 -54357394 + AluS SINE Alu 1 62 -237 1513 112 5 0 chr15 47023127 47023332 -54357189 + AluSg/x SINE Alu 107 312 0 439 153 12 0 chr15 47023753 47023838 -54356683 - L1MB8 LINE L1 0 6178 6093 707 150 65 40 chr15 47023847 47024047 -54356474 - L1MB4 LINE L1 -1 6179 5975 270 164 16 16 chr15 47024051 47024112 -54356409 - L1MB4 LINE L1 -977 5356 5296 2260 102 13 0 chr15 47024130 47024433 -54356088 - AluSg SINE Alu -3 307 1 697 112 0 0 chr15 47025173 47025271 -54355250 + AluSg/x SINE Alu 193 290 -22 2348 96 7 0 chr15 47025938 47026241 -54354280 - AluSx SINE Alu -7 305 1 3292 40 26 17 chr15 47026793 47027215 -54353306 + L1PA5 LINE L1 5729 6154 0 21 0 0 0 chr15 47027306 47027327 -54353194 + AT_rich Low_complexity Low_complexity 1 21 0 281 392 48 16 chr15 47027798 47027923 -54352598 - L2 LINE L2 -21 3251 3123 3849 55 0 0 chr15 47028045 47028534 -54351987 - L1PA6 LINE L1 -59 6095 5607 616 63 0 0 chr15 47028688 47028767 -54351754 - MADE1 DNA Mariner -1 79 1 2213 89 0 0 chr15 47028863 47029168 -54351353 - AluSg SINE Alu 0 307 3 21 0 0 0 chr15 47029218 47029239 -54351282 + AT_rich Low_complexity Low_complexity 1 21 0 836 214 42 78 chr15 47029958 47030079 -54350442 - Charlie2 DNA MER1_type -596 2266 2142 2295 104 0 0 chr15 47030079 47030377 -54350144 - AluSx SINE Alu -14 298 1 836 214 42 78 chr15 47030377 47030681 -54349840 - Charlie2 DNA MER1_type -720 2142 1856 796 240 103 33 chr15 47030673 47030973 -54349548 - Charlie2 DNA MER1_type -2453 329 9 * 243 244 47 63 chr15 47031586 47031713 -54348808 - MLT1L LTR MaLR -8 607 483 362 258 13 66 chr15 47031831 47031982 -54348539 - MLT1L LTR MaLR -337 278 136 1935 150 0 26 chr15 47032596 47032903 -54347618 - AluSx SINE Alu -13 299 1 2070 105 4 0 chr15 47033500 47033777 -54346744 + AluSg SINE Alu 17 294 -16 228 282 113 20 chr15 47034567 47034649 -54345872 - L1ME4a LINE L1 -115 6006 5933 1874 151 16 16 chr15 47034649 47034953 -54345568 - AluSx SINE Alu -8 304 1 228 282 113 20 chr15 47034953 47035118 -54345403 - L1ME4a LINE L1 -188 5933 5736 352 259 65 43 chr15 47035247 47035321 -54345200 - L1ME4a LINE L1 -601 5520 5440 1568 175 34 10 chr15 47035321 47035612 -54344909 - AluJo SINE Alu -14 298 1 352 259 65 43 chr15 47035612 47035676 -54344845 - L1ME4a LINE L1 -681 5440 5379 31 0 0 0 chr15 47035693 47035724 -54344797 + AT_rich Low_complexity Low_complexity 1 31 0 2205 120 3 0 chr15 47037222 47037523 -54342998 - AluSg SINE Alu -8 302 1 23 33 0 0 chr15 47038418 47038448 -54342073 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr15 47038721 47038744 -54341777 + AT_rich Low_complexity Low_complexity 1 23 0 1589 205 0 3 chr15 47038751 47039044 -54341477 + AluJo SINE Alu 19 310 -2 427 266 8 8 chr15 47039255 47039379 -54341142 + MER94 DNA DNA 4 127 -7 853 161 6 29 chr15 47039690 47039864 -54340657 - AluSg/x SINE Alu -13 299 130 300 143 0 54 chr15 47040160 47040216 -54340305 - AluSg/x SINE Alu -130 170 118 2195 119 23 0 chr15 47040718 47041021 -54339500 + AluSg SINE Alu 1 310 0 1920 119 16 16 chr15 47041518 47041828 -54338693 - AluSx SINE Alu 0 312 3 2289 107 3 0 chr15 47043824 47044132 -54336389 - AluSc SINE Alu 0 309 1 21 0 0 0 chr15 47044136 47044157 -54336364 + AT_rich Low_complexity Low_complexity 1 21 0 647 235 268 9 chr15 47045174 47045502 -54335019 + L1M4 LINE L1 3751 4163 -1983 2690 38 0 6 chr15 47045510 47045826 -54334695 + AluYb8 SINE Alu 5 318 0 1144 132 0 39 chr15 47045826 47046008 -54334513 + AluSg/x SINE Alu 134 308 -4 895 139 77 52 chr15 47046104 47046298 -54334223 + MER46A DNA MER2_type 28 226 -10 365 257 27 60 chr15 47046313 47046496 -54334025 - HAL1 LINE L1 -178 2329 2153 279 356 41 0 chr15 47046530 47046676 -54333845 - HAL1 LINE L1 -556 1951 1800 384 240 0 10 chr15 47046826 47046926 -54333595 + L1MC/D LINE L1 5689 5787 -2021 2220 111 10 0 chr15 47046995 47047293 -54333228 + AluSp SINE Alu 1 301 -12 21 0 0 0 chr15 47047681 47047702 -54332819 + AT_rich Low_complexity Low_complexity 1 21 0 462 238 143 75 chr15 47048307 47048610 -54331911 + L1MEd LINE L1 613 959 -5160 2000 126 14 0 chr15 47048610 47048895 -54331626 + AluSx SINE Alu 1 289 -23 462 238 143 75 chr15 47048895 47049045 -54331476 + L1MEd LINE L1 959 1097 -5022 312 228 43 54 chr15 47049070 47049162 -54331359 + L1MEd LINE L1 1161 1251 -4868 2301 103 0 3 chr15 47049352 47049653 -54330868 - AluSx SINE Alu -12 300 1 4763 211 32 44 chr15 47049654 47050582 -54329939 - L1M4 LINE L1 -867 5559 4653 2240 118 0 0 chr15 47050582 47050871 -54329650 - AluSx SINE Alu -23 289 1 4763 211 32 44 chr15 47050871 47051434 -54329087 - L1M4 LINE L1 -1773 4653 4085 1048 133 0 13 chr15 47051448 47051598 -54328923 - AluJo SINE Alu -164 148 1 9167 154 92 77 chr15 47051599 47052064 -54328457 - L1MCa LINE L1 -3220 3206 2749 270 0 0 0 chr15 47052064 47052094 -54328427 + (TG)n Simple_repeat Simple_repeat 1 30 0 1941 137 7 0 chr15 47052094 47052371 -54328150 - AluSx SINE Alu -33 279 1 9167 154 92 77 chr15 47052371 47053215 -54327306 - L1MCa LINE L1 -3677 2749 1919 2102 111 3 10 chr15 47053215 47053512 -54327009 - AluSx SINE Alu -17 295 1 9167 154 92 77 chr15 47053512 47054091 -54326430 - L1MCa LINE L1 -4507 1919 1350 751 139 9 0 chr15 47054091 47054206 -54326315 - FLAM_C SINE Alu -17 116 1 9167 154 92 77 chr15 47054206 47055456 -54325065 - L1MCa LINE L1 -5076 1350 19 376 169 14 0 chr15 47055454 47055525 -54324996 - L1MC4 LINE L1 -1027 7015 6944 * 1675 223 95 6 chr15 47055537 47056043 -54324478 - L1ME1 LINE L1 -5 6161 5611 235 203 95 0 chr15 47056073 47056147 -54324374 - L1MC4 LINE L1 -1138 6904 6824 193 191 48 0 chr15 47056162 47056204 -54324317 - MER5B DNA MER1_type -123 55 12 2298 101 3 7 chr15 47056621 47056928 -54323593 - AluSx SINE Alu -6 306 1 1666 146 94 4 chr15 47056937 47057204 -54323317 - AluJb SINE Alu -21 291 1 1359 149 112 45 chr15 47057732 47058001 -54322520 - AluJb SINE Alu -25 287 1 21 0 0 0 chr15 47058761 47058782 -54321739 + AT_rich Low_complexity Low_complexity 1 21 0 777 205 0 48 chr15 47058782 47058948 -54321573 + FRAM SINE Alu 1 158 -8 893 133 0 15 chr15 47059022 47059157 -54321364 + FLAM_C SINE Alu 1 133 0 2187 112 16 7 chr15 47059292 47059597 -54320924 + AluSx SINE Alu 1 308 -4 387 192 224 83 chr15 47059658 47059722 -54320799 + MER5A DNA MER1_type 9 63 -126 2374 86 0 16 chr15 47059722 47060026 -54320495 + AluSc SINE Alu 1 299 -10 387 192 224 83 chr15 47060026 47060117 -54320404 + MER5A DNA MER1_type 63 186 -3 257 216 162 27 chr15 47060139 47060250 -54320271 - L3 LINE CR1 -70 1507 1382 1117 204 21 16 chr15 47060258 47060509 -54320012 - MIR SINE MIR -7 255 4 334 211 56 44 chr15 47060512 47060602 -54319919 - L3 LINE CR1 -182 1395 1305 199 268 295 0 chr15 47060659 47060771 -54319750 - L3 LINE CR1 -273 1304 1160 1811 165 0 3 chr15 47060869 47061160 -54319361 + AluJb SINE Alu 1 290 -22 21 0 0 0 chr15 47061704 47061725 -54318796 + AT_rich Low_complexity Low_complexity 1 21 0 1955 116 4 0 chr15 47061734 47062010 -54318511 - AluSg SINE Alu -17 293 17 1963 147 0 26 chr15 47062607 47062914 -54317607 + AluSx SINE Alu 1 299 -13 233 319 14 49 chr15 47063535 47063679 -54316842 + MLT1L LTR MaLR 140 278 -337 226 252 47 63 chr15 47063797 47063924 -54316597 + MLT1L LTR MaLR 483 607 -8 796 240 103 33 chr15 47064537 47064837 -54315684 + Charlie2 DNA MER1_type 9 329 -2533 * 893 207 42 78 chr15 47064829 47065133 -54315388 + Charlie2 DNA MER1_type 1856 2142 -720 2295 104 0 0 chr15 47065133 47065431 -54315090 + AluSx SINE Alu 1 298 -14 893 207 42 78 chr15 47065431 47065552 -54314969 + Charlie2 DNA MER1_type 2142 2266 -596 21 0 0 0 chr15 47066271 47066292 -54314229 + AT_rich Low_complexity Low_complexity 1 21 0 2214 89 0 0 chr15 47066342 47066647 -54313874 + AluSg SINE Alu 3 307 0 616 63 0 0 chr15 47066743 47066822 -54313699 + MADE1 DNA Mariner 1 79 -1 4257 44 22 13 chr15 47066976 47067519 -54313002 + L1PA5 LINE L1 5607 6154 0 21 0 0 0 chr15 47067609 47067630 -54312891 + AT_rich Low_complexity Low_complexity 1 21 0 281 392 48 16 chr15 47068101 47068226 -54312295 - L2 LINE L2 -21 3251 3123 527 130 57 16 chr15 47068346 47068469 -54312052 - L1PA6 LINE L1 -59 6095 5968 632 268 103 65 chr15 47168490 47168823 -54211698 - L2 LINE L2 -197 3116 2779 2220 120 3 0 chr15 47168827 47169118 -54211403 - AluSg SINE Alu -18 292 1 1612 123 4 0 chr15 47169243 47169471 -54211050 - AluSq SINE Alu 0 313 85 207 301 12 0 chr15 47169652 47169735 -54210786 + (TATG)n Simple_repeat Simple_repeat 3 86 0 2187 130 10 0 chr15 47170004 47170305 -54210216 - AluSx SINE Alu -8 304 1 238 301 62 0 chr15 47170522 47170635 -54209886 - L1M4 LINE L1 -1114 5032 4913 1214 129 0 0 chr15 47171332 47171503 -54209018 - AluSc SINE Alu -13 296 126 1070 161 0 0 chr15 47171604 47171765 -54208756 - AluSq SINE Alu -152 161 1 709 220 112 58 chr15 47171766 47172085 -54208436 - LTR54 LTR ERV1 -28 482 78 2418 90 3 0 chr15 47173162 47173463 -54207058 + AluSp SINE Alu 1 302 -11 555 163 0 0 chr15 47173563 47173649 -54206872 - AluS SINE Alu -224 88 3 21 0 0 0 chr15 47174154 47174175 -54206346 + AT_rich Low_complexity Low_complexity 1 21 0 742 269 0 0 chr15 47174175 47174331 -54206190 - AluSg/x SINE Alu -23 287 132 2193 121 16 0 chr15 47174350 47174655 -54205866 - AluSx SINE Alu -2 310 1 810 253 29 17 chr15 47174671 47174912 -54205609 - L1ME3A LINE L1 -2 6168 5925 624 196 101 22 chr15 47174913 47175051 -54205470 - MER63 DNA MER1_type -287 775 1 277 179 0 18 chr15 47175053 47175109 -54205412 - L2 LINE L2 -68 3245 3191 2197 101 0 3 chr15 47175268 47175555 -54204966 - AluSq SINE Alu -26 287 2 1025 107 13 0 chr15 47175656 47175888 -54204633 + L1MA8 LINE L1 5620 5950 -341 2318 78 3 0 chr15 47176113 47176425 -54204096 - AluSx SINE Alu 0 313 1 947 96 0 0 chr15 47176449 47176574 -54203947 - FLAM_C SINE Alu -8 125 1 2016 124 13 0 chr15 47177218 47177525 -54202996 - MER2 DNA MER2_type -34 311 1 4058 185 83 15 chr15 47177525 47177838 -54202683 + MER21B LTR ERV1 16 306 -557 2296 95 3 0 chr15 47177838 47178132 -54202389 + AluSg SINE Alu 1 295 -15 4058 185 83 15 chr15 47178132 47178609 -54201912 + MER21B LTR ERV1 306 860 -3 909 137 8 0 chr15 47178617 47178748 -54201773 - FLAM_C SINE Alu -11 132 1 2287 109 3 0 chr15 47178748 47179050 -54201471 - AluSq SINE Alu -2 311 9 1606 145 0 4 chr15 47179531 47179773 -54200748 - AluSx SINE Alu -71 241 1 1973 108 73 0 chr15 47181021 47181309 -54199212 - AluSx SINE Alu -3 309 1 278 323 58 26 chr15 47181312 47181406 -54199115 - MIR SINE MIR -17 245 143 5002 76 19 29 chr15 47181406 47181851 -54198670 + LTR8 LTR ERV1 1 438 -253 2101 116 3 7 chr15 47181851 47182152 -54198369 + AluSg SINE Alu 1 300 -10 5002 76 19 29 chr15 47182152 47182402 -54198119 + LTR8 LTR ERV1 438 689 -2 278 323 58 26 chr15 47182402 47182462 -54198059 - MIR SINE MIR -119 143 86 371 222 192 78 chr15 47182523 47182559 -54197962 - MER5A DNA MER1_type 0 189 158 2452 65 0 0 chr15 47182559 47182853 -54197668 + AluY SINE Alu 1 294 -17 2075 142 0 3 chr15 47182861 47183157 -54197364 + AluJb SINE Alu 1 295 -17 371 222 192 78 chr15 47183157 47183278 -54197243 - MER5A DNA MER1_type -37 152 4 1112 131 0 0 chr15 47183412 47183565 -54196956 - AluSx SINE Alu -155 157 5 2309 115 0 3 chr15 47183704 47184008 -54196513 - AluSx SINE Alu -9 303 1 645 146 64 0 chr15 47185423 47185533 -54194988 + MER94 DNA DNA 1 117 -17 2172 91 40 13 chr15 47185614 47185912 -54194609 - AluSq SINE Alu -7 306 1 288 0 0 0 chr15 47185982 47186014 -54194507 + (TA)n Simple_repeat Simple_repeat 1 32 0 1466 194 0 32 chr15 47186015 47186299 -54194222 - AluJo SINE Alu -27 285 11 1060 200 31 0 chr15 47187312 47187507 -54193014 + MER3 DNA MER1_type 8 208 -1 525 73 0 0 chr15 47187545 47187613 -54192908 + AluS SINE Alu 2 69 -244 2008 129 3 10 chr15 47187952 47188265 -54192256 + AluSx SINE Alu 1 312 0 321 330 39 10 chr15 47188298 47188414 -54192107 + MIR SINE MIR 9 127 -81 2400 102 0 6 chr15 47188450 47188763 -54191758 + AluSx SINE Alu 1 311 -1 2323 101 0 10 chr15 47188766 47189063 -54191458 + AluSq SINE Alu 1 294 -19 1244 146 0 0 chr15 47189063 47189241 -54191280 + AluSg/x SINE Alu 134 311 -1 2281 107 0 3 chr15 47189750 47190050 -54190471 + AluSg SINE Alu 2 300 -10 1308 299 37 32 chr15 47190079 47190514 -54190007 + MER115 DNA AcHobo 1 437 -256 3406 219 76 12 chr15 47190546 47191345 -54189176 - MER21B LTR ERV1 -11 852 3 887 279 29 16 chr15 47191373 47191536 -54188985 + MER115 DNA AcHobo 445 613 -80 2562 56 0 0 chr15 47191536 47191839 -54188682 - AluY SINE Alu -8 303 1 887 279 29 16 chr15 47191839 47191919 -54188602 + MER115 DNA AcHobo 613 691 -2 265 175 0 79 chr15 47192147 47192210 -54188311 + L2 LINE L2 3211 3268 -45 818 168 0 0 chr15 47192230 47192361 -54188160 - FLAM_C SINE Alu 0 133 3 2302 119 0 3 chr15 47192373 47192675 -54187846 - AluSx SINE Alu -11 301 1 2326 112 0 0 chr15 47192760 47193072 -54187449 - AluSx SINE Alu 0 312 1 686 148 0 9 chr15 47193117 47193261 -54187260 - FLAM_A SINE Alu 0 150 8 376 182 26 0 chr15 47193872 47193949 -54186572 + Tigger5 DNA MER2_type 2245 2323 0 641 217 11 33 chr15 47194362 47194542 -54185979 - MER104 DNA Tc2 -4 176 1 2097 130 0 34 chr15 47194585 47194619 -54185902 - AluSx SINE Alu 0 312 278 219 69 0 0 chr15 47194619 47194648 -54185873 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2097 130 0 34 chr15 47194648 47194936 -54185585 - AluSx SINE Alu -34 278 1 545 349 24 8 chr15 47194995 47195247 -54185274 - MIR SINE MIR 0 262 7 575 179 98 0 chr15 47195907 47196019 -54184502 - Charlie1b DNA MER1_type 0 523 401 2504 82 14 11 chr15 47196022 47196376 -54184145 + L1PA14 LINE L1 5804 6158 -3 1715 101 18 50 chr15 47196428 47196572 -54183949 - MER50 LTR ERV1 -23 711 579 2063 119 44 0 chr15 47196572 47196865 -54183656 + AluSq SINE Alu 1 306 -7 1715 101 18 50 chr15 47196865 47196998 -54183523 - MER50 LTR ERV1 -155 579 443 4763 113 188 89 chr15 47197002 47198293 -54182228 + pTR5 LTR ERV1 742 2295 -143 2160 141 70 27 chr15 47198307 47198719 -54181802 - MER50 LTR ERV1 -295 439 10 1614 173 16 90 chr15 47199053 47199497 -54181024 - Charlie1b DNA MER1_type -112 411 1 3191 133 9 11 chr15 47199615 47199828 -54180693 - L1MB3 LINE L1 -7 6176 5964 1750 141 10 35 chr15 47199828 47200140 -54180381 - AluJo SINE Alu -8 304 1 3191 133 9 11 chr15 47200140 47200452 -54180069 - L1MB3 LINE L1 -219 5964 5652 567 152 0 0 chr15 47200492 47200584 -54179937 - L1MB3 LINE L1 -522 5661 5570 180 0 0 0 chr15 47200654 47200674 -54179847 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 2250 109 6 3 chr15 47200939 47201250 -54179271 + AluSx SINE Alu 1 312 0 351 0 0 0 chr15 47202233 47202272 -54178249 + (CA)n Simple_repeat Simple_repeat 1 39 0 2251 102 7 0 chr15 47202438 47202733 -54177788 - AluSx SINE Alu -15 297 1 234 257 0 14 chr15 47203087 47203157 -54177364 + CT-rich Low_complexity Low_complexity 2 70 0 2108 236 131 27 chr15 47203217 47203913 -54176608 + LTR50 LTR ERVL 4 771 -24 2489 74 3 6 chr15 47203953 47204265 -54176256 - AluSp SINE Alu -2 311 1 360 233 168 50 chr15 47205391 47205593 -54174928 - L1ME LINE L1 -372 5749 5524 2148 112 0 14 chr15 47205710 47206030 -54174491 + AluSx SINE Alu 1 316 0 204 40 0 0 chr15 47206625 47206650 -54173871 + (CAAAAA)n Simple_repeat Simple_repeat 5 29 0 367 273 153 88 chr15 47207236 47207668 -54172853 + L1MDa LINE L1 1601 2060 -4480 22 0 0 0 chr15 47209021 47209043 -54171478 + AT_rich Low_complexity Low_complexity 1 22 0 262 220 85 0 chr15 47209122 47209181 -54171340 - MER91 DNA MER1_type 0 140 77 1077 166 50 55 chr15 47209355 47209674 -54170847 - MER33 DNA MER1_type -16 308 1 383 275 55 0 chr15 47209810 47209952 -54170569 + L1ME LINE L1 5434 5581 -540 249 209 0 0 chr15 47210085 47210152 -54170369 + (TA)n Simple_repeat Simple_repeat 1 67 0 298 274 57 8 chr15 47211150 47211274 -54169247 + LTR67 LTR ERVL 425 554 -3 237 247 130 0 chr15 47211650 47211727 -54168794 - L3 LINE CR1 -162 1415 1329 1202 316 116 30 chr15 47211741 47211898 -54168623 - L3 LINE CR1 -785 792 650 2381 93 0 3 chr15 47211898 47212199 -54168322 + AluSg SINE Alu 1 300 -10 1202 316 116 30 chr15 47212199 47212664 -54167857 - L3 LINE CR1 -927 650 117 1951 154 3 3 chr15 47212791 47213077 -54167444 - AluJb SINE Alu -24 288 3 332 247 105 40 chr15 47213157 47213404 -54167117 - L1ME4a LINE L1 -4 6117 5855 2333 91 7 0 chr15 47213434 47213731 -54166790 - AluSq SINE Alu -14 299 1 313 306 110 58 chr15 47213999 47214172 -54166349 - MIR SINE MIR -71 191 10 1942 95 7 3 chr15 47214454 47214737 -54165784 + L1PB2 LINE L1 5865 6148 -3 2244 94 0 29 chr15 47214905 47215214 -54165307 - AluSx SINE Alu -12 300 1 356 148 0 0 chr15 47215218 47215272 -54165249 + MER5B DNA MER1_type 1 54 -124 2325 88 0 3 chr15 47215282 47215578 -54164943 + AluSc SINE Alu 7 301 -8 1559 185 35 78 chr15 47215887 47216060 -54164461 - MLT1C LTR MaLR -1 466 287 2179 115 7 0 chr15 47216060 47216365 -54164156 - AluSx SINE Alu -4 308 2 1559 185 35 78 chr15 47216365 47216583 -54163938 - MLT1C LTR MaLR -180 287 98 1701 94 75 130 chr15 47216583 47216914 -54163607 - AluSp SINE Alu 0 313 1 1559 185 35 78 chr15 47216914 47217008 -54163513 - MLT1C LTR MaLR -369 98 1 2445 25 0 7 chr15 47217762 47218042 -54162479 - AluY SINE Alu -12 299 22 489 254 105 49 chr15 47218074 47218185 -54162336 - L1MC5 LINE L1 -49 7912 7809 2234 121 0 0 chr15 47218185 47218482 -54162039 - AluSx SINE Alu -15 297 1 489 254 105 49 chr15 47218482 47218760 -54161761 - L1MC5 LINE L1 -152 7809 7501 226 167 48 0 chr15 47218851 47218893 -54161628 - MER20 DNA MER1_type -175 44 1 263 181 83 0 chr15 47218927 47218999 -54161522 - L1MC4 LINE L1 -1350 6692 6615 240 234 130 0 chr15 47218930 47219007 -54161514 + L1MC4 LINE L1 6614 6700 -1342 * 306 245 0 82 chr15 47219046 47219144 -54161377 - L1MC4 LINE L1 -1339 6703 6614 230 264 23 0 chr15 47219160 47219247 -54161274 + L1MC4 LINE L1 6614 6702 -1340 * 242 267 12 0 chr15 47219208 47219294 -54161227 - L1MC4 LINE L1 -1341 6701 6615 240 167 0 0 chr15 47219297 47219345 -54161176 + (TA)n Simple_repeat Simple_repeat 2 49 0 229 261 0 22 chr15 47219345 47219437 -54161084 + L1MC4 LINE L1 6614 6703 -1339 1990 127 40 0 chr15 47219447 47219747 -54160774 + AluSx SINE Alu 1 312 0 245 314 33 33 chr15 47219922 47220075 -54160446 - L1MC4a LINE L1 -412 7396 7244 569 223 54 22 chr15 47220099 47220323 -54160198 - L1MC5 LINE L1 -738 7223 6993 364 259 6 82 chr15 47220363 47220459 -54160062 - L1MC4 LINE L1 -945 7097 7016 1836 162 10 7 chr15 47220459 47220762 -54159759 - AluJb SINE Alu -8 304 1 364 259 6 82 chr15 47220762 47220823 -54159698 - L1MC4 LINE L1 -1026 7016 6952 423 0 0 0 chr15 47220936 47220983 -54159538 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 2289 114 0 0 chr15 47221034 47221331 -54159190 + AluSq SINE Alu 1 297 -16 5154 185 47 24 chr15 47221352 47221716 -54158805 - L1MC1 LINE L1 -89 6244 5890 9191 97 11 9 chr15 47221716 47223000 -54157521 - HSMAR1 DNA Mariner 0 1287 1 5154 185 47 24 chr15 47223000 47223692 -54156829 - L1MC1 LINE L1 -443 5890 5216 230 0 0 32 chr15 47223702 47223733 -54156788 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2116 125 0 3 chr15 47223733 47224018 -54156503 - AluSx SINE Alu -26 286 1 5154 185 47 24 chr15 47224018 47224422 -54156099 - L1MC1 LINE L1 -1117 5216 4823 2418 77 7 0 chr15 47224422 47224720 -54155801 - AluSx SINE Alu -12 300 1 5154 185 47 24 chr15 47224720 47225048 -54155473 - L1MC1 LINE L1 -1510 4823 4415 1732 175 8 38 chr15 47225053 47225418 -54155103 - MLT1A1 LTR MaLR -11 354 1 2072 216 30 17 chr15 47225418 47225886 -54154635 - MLT1A1-int LTR MaLR 0 1735 1262 234 132 0 0 chr15 47226176 47226214 -54154307 - MLT1A1-int LTR MaLR -515 856 819 2333 73 3 16 chr15 47226218 47226533 -54153988 - AluY SINE Alu 0 311 1 1231 212 7 33 chr15 47226542 47226848 -54153673 - MLT1A1-int LTR MaLR -639 732 435 2012 115 10 23 chr15 47226848 47227152 -54153369 + AluSq SINE Alu 1 300 -13 250 62 62 21 chr15 47227177 47227225 -54153296 + CT-rich Low_complexity Low_complexity 5 54 0 2172 129 0 0 chr15 47227236 47227538 -54152983 - AluSx SINE Alu 0 312 11 527 221 0 0 chr15 47227551 47227655 -54152866 - MLT1A1-int LTR MaLR -1312 423 320 4104 177 15 47 chr15 47227656 47228125 -54152396 + L1PB2 LINE L1 3436 3919 -2227 2182 107 31 0 chr15 47228125 47228415 -54152106 + AluSx SINE Alu 1 299 -13 4104 177 15 47 chr15 47228415 47228960 -54151561 + L1PB2 LINE L1 3919 4417 -1729 1413 116 0 20 chr15 47228960 47229198 -54151323 + AluSg/x SINE Alu 88 321 0 5775 142 10 36 chr15 47229205 47229301 -54151220 + L1PB2 LINE L1 4396 4493 -1658 2063 98 8 0 chr15 47229301 47229567 -54150954 + AluSq SINE Alu 1 268 -45 5775 142 10 36 chr15 47229567 47230174 -54150347 + L1PB2 LINE L1 4493 5114 -1037 2383 64 0 0 chr15 47230174 47230477 -54150044 + AluY SINE Alu 1 303 0 5775 142 10 36 chr15 47230477 47231581 -54148940 + L1PB2 LINE L1 5114 6148 -3 1568 220 3 0 chr15 47231584 47231916 -54148605 - MLT1A1-int LTR MaLR -1402 333 1 1838 194 72 16 chr15 47231931 47232317 -54148204 - MLT2B1 LTR ERVL -50 470 63 1778 112 0 8 chr15 47232321 47232570 -54147951 + AluSq SINE Alu 67 313 0 3747 237 48 20 chr15 47232597 47233822 -54146699 - L1M4 LINE L1 -1743 4403 3144 1583 195 122 3 chr15 47233978 47234362 -54146159 + MER63B DNA MER1_type 1 430 -6 425 266 98 80 chr15 47234363 47234539 -54145982 - L1MEd LINE L1 -1168 1322 1151 1776 141 36 36 chr15 47234539 47234844 -54145677 - AluJb SINE Alu -7 305 1 425 266 98 80 chr15 47234844 47234878 -54145643 - L1MEd LINE L1 -1339 1151 1119 2200 112 3 0 chr15 47234878 47235172 -54145349 + AluSq SINE Alu 1 295 -18 425 266 98 80 chr15 47235172 47235287 -54145234 - L1MEd LINE L1 -1371 1119 993 1051 296 94 19 chr15 47235319 47235789 -54144732 - LTR33 LTR ERVL -8 513 9 284 222 22 22 chr15 47235819 47235909 -54144612 - L1MEd LINE L1 -5394 725 636 29 47 0 0 chr15 47236238 47236281 -54144240 + AT_rich Low_complexity Low_complexity 1 43 0 2267 103 0 3 chr15 47236286 47236588 -54143933 + AluSg SINE Alu 1 301 -9 2588 151 31 19 chr15 47236590 47237073 -54143448 - L1MB3 LINE L1 -10 6173 5685 386 346 45 39 chr15 47237210 47237389 -54143132 + MER91A DNA MER1_type 1 180 -16 343 295 11 0 chr15 47237423 47237518 -54143003 - L1MEd LINE L1 -5944 175 80 1569 145 44 98 chr15 47237588 47237974 -54142547 - MLT1A1 LTR MaLR 0 365 1 2079 83 4 0 chr15 47238023 47238275 -54142246 - AluSp SINE Alu -60 253 1 1064 184 11 0 chr15 47238314 47238499 -54142022 + AluSg/x SINE Alu 126 312 0 2172 100 0 4 chr15 47238501 47238782 -54141739 + AluSx SINE Alu 1 280 -32 255 93 0 0 chr15 47238782 47238825 -54141696 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 753 154 43 0 chr15 47239137 47239254 -54141267 - FLAM_A SINE Alu -11 122 1 2248 104 0 7 chr15 47239476 47239783 -54140738 - AluSx SINE Alu -7 305 1 225 0 0 0 chr15 47241156 47241181 -54139340 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 723 87 0 0 chr15 47241180 47241284 -54139237 + (TA)n Simple_repeat Simple_repeat 1 104 0 2591 72 0 0 chr15 47241286 47241593 -54138928 - AluY SINE Alu -4 307 1 319 295 125 30 chr15 47242329 47242529 -54137992 - MIR SINE MIR -42 220 2 2158 92 11 3 chr15 47243717 47243999 -54136522 + AluSc SINE Alu 24 307 -2 813 269 113 45 chr15 47244017 47244344 -54136177 + L2 LINE L2 916 1276 -2038 2203 100 0 19 chr15 47244344 47244653 -54135868 - AluSx SINE Alu -9 303 1 813 269 113 45 chr15 47244653 47244722 -54135799 + L2 LINE L2 1276 1339 -1975 675 280 119 19 chr15 47245331 47245567 -54134954 - MIR SINE MIR -1 261 3 1507 268 62 72 chr15 47245758 47246517 -54134004 + L2 LINE L2 2303 3052 -261 896 249 42 117 chr15 47246525 47246982 -54133539 + MLT1G LTR MaLR 1 437 -131 1205 144 0 11 chr15 47247019 47247199 -54133322 - FRAM SINE Alu -6 170 1 692 220 82 69 chr15 47247267 47247499 -54133022 + L2 LINE L2 3074 3308 -5 2131 150 19 11 chr15 47247742 47248101 -54132420 + MLT1A1 LTR MaLR 4 365 0 2305 97 13 0 chr15 47249301 47249609 -54130912 - AluSx SINE Alu 0 312 1 206 271 29 57 chr15 47249770 47249840 -54130681 - L3 LINE CR1 -7 1570 1503 373 327 71 0 chr15 47250427 47250540 -54129981 + MIR3 SINE MIR 43 163 -45 262 348 30 30 chr15 47250574 47250738 -54129783 - MIR SINE MIR -50 212 49 28 48 0 0 chr15 47251773 47251815 -54128706 + AT_rich Low_complexity Low_complexity 1 42 0 5651 57 19 27 chr15 47251889 47252074 -54128447 - MER4E LTR ERV1 0 766 581 2181 107 4 0 chr15 47252074 47252377 -54128144 + AluSx SINE Alu 1 304 0 5651 57 19 27 chr15 47252377 47252961 -54127560 - MER4E LTR ERV1 -185 581 2 380 304 57 58 chr15 47255656 47256271 -54124250 - MER89-int LTR ERV1 -3070 3731 3118 1944 204 37 20 chr15 47256667 47257154 -54123367 - MER89-int LTR ERV1 -4062 4113 129 187 298 0 18 chr15 47258234 47258291 -54122230 + L3 LINE CR1 561 616 -961 4969 124 15 58 chr15 47259073 47259920 -54120601 - MER4E-int LTR ERV1 -5947 811 1 5550 78 38 28 chr15 47259920 47260264 -54120257 - MER4E LTR ERV1 0 766 427 2516 74 3 3 chr15 47260264 47260574 -54119947 + AluSp SINE Alu 1 310 -3 5550 78 38 28 chr15 47260574 47260987 -54119534 - MER4E LTR ERV1 -339 427 1 2267 93 33 3 chr15 47261097 47261397 -54119124 + AluSc SINE Alu 1 309 0 1937 112 45 0 chr15 47261659 47261963 -54118558 + AluSx SINE Alu 1 316 0 372 245 29 0 chr15 47262655 47262757 -54117764 - MIR3 SINE MIR -3 205 101 2240 97 0 20 chr15 47263019 47263318 -54117203 + AluSx SINE Alu 5 297 -15 2648 140 7 5 chr15 47263329 47263743 -54116778 + L1MB3 LINE L1 5769 6183 0 1157 195 178 10 chr15 47263753 47264051 -54116470 + L1ME3A LINE L1 5808 6155 -15 317 290 232 5 chr15 47264072 47264296 -54116225 + L3 LINE CR1 1097 1371 -206 424 306 101 5 chr15 47264353 47264552 -54115969 + MIR SINE MIR 30 247 -15 253 128 0 0 chr15 47264647 47264686 -54115835 - MIR SINE MIR -150 112 74 374 0 22 0 chr15 47264931 47264977 -54115544 + (TG)n Simple_repeat Simple_repeat 1 47 0 24 0 0 0 chr15 47264990 47265014 -54115507 + AT_rich Low_complexity Low_complexity 1 24 0 2433 97 3 0 chr15 47265142 47265451 -54115070 + AluSx SINE Alu 1 310 -2 336 239 37 18 chr15 47266366 47266475 -54114046 - LTR33 LTR ERVL -41 480 370 918 234 6 0 chr15 47266507 47266674 -54113847 - MER5A DNA MER1_type -1 188 21 1548 157 93 11 chr15 47266711 47266979 -54113542 + AluJo SINE Alu 12 301 -11 538 266 145 25 chr15 47266995 47267236 -54113285 - LTR33 LTR ERVL -250 271 2 216 249 130 43 chr15 47267332 47267485 -54113036 - MIR SINE MIR -58 204 32 1656 144 23 52 chr15 47267935 47267959 -54112562 + MER7A DNA MER2_type 1 24 -3014 2518 72 3 0 chr15 47267959 47268266 -54112255 - AluSp SINE Alu -5 308 1 1656 144 23 52 chr15 47268266 47268490 -54112031 + MER7A DNA MER2_type 24 240 -2798 2323 61 4 0 chr15 47268490 47268808 -54111713 - AluY SINE Alu 0 319 1 1656 144 23 52 chr15 47268808 47268863 -54111658 + MER7A DNA MER2_type 240 295 -51 1996 133 6 47 chr15 47268871 47269193 -54111328 + MER1B DNA MER1_type 31 339 0 300 208 0 0 chr15 47269194 47269247 -54111274 + MER7A DNA MER2_type 294 346 0 1816 129 116 6 chr15 47269570 47269881 -54110640 + MER47A DNA MER2_type 20 364 -2 2410 81 0 0 chr15 47270855 47271153 -54109368 + AluSc SINE Alu 1 298 -11 4322 187 40 57 chr15 47271628 47272800 -54107721 - L1MB8 LINE L1 -1 6177 4987 2443 67 3 7 chr15 47272800 47273100 -54107421 - AluY SINE Alu -12 299 1 4322 187 40 57 chr15 47273100 47273520 -54107001 - L1MB8 LINE L1 -1191 4987 4616 1449 223 3 26 chr15 47273520 47273829 -54106692 - AluJo SINE Alu -10 302 1 4322 187 40 57 chr15 47273829 47273954 -54106567 - L1MB8 LINE L1 -1562 4616 4490 261 57 0 0 chr15 47273963 47273998 -54106523 + (A)n Simple_repeat Simple_repeat 1 35 0 2082 119 11 0 chr15 47274014 47274299 -54106222 + AluSx SINE Alu 2 289 -23 4443 204 71 40 chr15 47274314 47274852 -54105669 + L1M4 LINE L1 2489 3009 -3137 1982 141 6 10 chr15 47274852 47275164 -54105357 + AluSq SINE Alu 1 311 -2 2126 100 0 37 chr15 47275167 47275467 -54105054 + AluSg SINE Alu 2 290 -20 4443 204 71 40 chr15 47275467 47275524 -54104997 + L1M4 LINE L1 3010 3064 -3082 2450 68 3 0 chr15 47275524 47275818 -54104703 + AluY SINE Alu 3 297 -14 4443 204 71 40 chr15 47275818 47276240 -54104281 + L1M4 LINE L1 3064 3471 -2675 911 165 0 0 chr15 47276240 47276373 -54104148 + FLAM_C SINE Alu 1 133 0 4443 204 71 40 chr15 47276373 47276710 -54103811 + L1M4 LINE L1 3471 3891 -2255 1848 153 3 20 chr15 47276716 47277017 -54103504 - AluJo SINE Alu -16 296 1 954 279 60 28 chr15 47277017 47277577 -54102944 - L1MEc LINE L1 -4127 2269 1689 1439 115 99 12 chr15 47277577 47277829 -54102692 + LTR65 LTR ERV1 391 664 -5 2388 98 3 0 chr15 47277881 47278186 -54102335 + AluSq SINE Alu 1 306 -7 1026 113 0 0 chr15 47278193 47278326 -54102195 + AluSg/x SINE Alu 144 276 -34 186 43 0 0 chr15 47278330 47278353 -54102168 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 273 277 160 0 chr15 47278353 47278447 -54102074 + L2 LINE L2 3162 3270 -2 2352 113 51 25 chr15 47278447 47278802 -54101719 + THE1B LTR MaLR 1 364 0 7163 114 23 39 chr15 47278802 47280210 -54100311 + THE1B-int LTR MaLR 1 1329 -322 2464 57 7 3 chr15 47280374 47280671 -54099850 + AluY SINE Alu 1 298 -13 446 255 43 12 chr15 47280929 47281090 -54099431 - L1ME4a LINE L1 0 6121 5956 424 228 73 37 chr15 47281100 47281236 -54099285 - L2 LINE L2 -12 3301 3161 326 193 42 84 chr15 47281264 47281383 -54099138 - L1ME4a LINE L1 -172 5949 5836 259 370 35 53 chr15 47281540 47281739 -54098782 - L2 LINE L2 -225 3047 2846 2315 104 3 0 chr15 47281739 47282037 -54098484 + AluSx SINE Alu 1 299 -13 2273 103 0 10 chr15 47282037 47282349 -54098172 + AluSq SINE Alu 1 309 -4 259 370 35 53 chr15 47282349 47282375 -54098146 - L2 LINE L2 -424 2848 2825 2327 91 7 0 chr15 47283500 47283809 -54096712 - AluSp SINE Alu -2 311 1 2142 130 0 7 chr15 47283817 47284125 -54096396 - AluSx SINE Alu -6 306 1 343 357 13 26 chr15 47284470 47284624 -54095897 + MIR3 SINE MIR 51 202 -6 719 193 25 97 chr15 47285063 47285231 -54095290 - Charlie1 DNA MER1_type -1 2760 2612 2030 127 23 3 chr15 47285231 47285531 -54094990 + AluSq SINE Alu 1 306 -7 719 193 25 97 chr15 47285531 47285600 -54094921 - Charlie1 DNA MER1_type -149 2612 2540 428 228 13 0 chr15 47285600 47285679 -54094842 + MER2 DNA MER2_type 2 81 -264 1185 176 105 40 chr15 47285791 47285915 -54094606 - Charlie1 DNA MER1_type -223 2538 2424 1805 209 118 32 chr15 47285915 47286380 -54094141 - MLT1D LTR MaLR 0 505 1 1185 176 105 40 chr15 47286380 47286578 -54093943 - Charlie1 DNA MER1_type -337 2424 2195 1209 112 0 0 chr15 47286588 47286757 -54093764 + LTR26B LTR ERV1 1 169 -362 2395 90 10 0 chr15 47286759 47287059 -54093462 - AluSx SINE Alu -9 303 1 1025 121 0 34 chr15 47287059 47287208 -54093313 - AluSq/x SINE Alu -168 144 1 2241 124 87 3 chr15 47287220 47287575 -54092946 + LTR26B LTR ERV1 147 531 0 1442 194 39 0 chr15 47287582 47287863 -54092658 - Charlie1 DNA MER1_type -584 2177 1886 1146 173 97 59 chr15 47287863 47288357 -54092164 + MER34B LTR ERV1 1 565 0 * 4313 174 156 104 chr15 47288357 47288449 -54092072 - Charlie1 DNA MER1_type -874 1887 1802 2622 42 3 0 chr15 47288449 47288758 -54091763 - AluY SINE Alu -1 310 1 2318 84 0 3 chr15 47288758 47289057 -54091464 - AluY SINE Alu -13 298 1 4313 174 156 104 chr15 47289057 47289134 -54091387 - Charlie1 DNA MER1_type -959 1802 1730 2412 91 3 0 chr15 47289134 47289443 -54091078 - AluSq SINE Alu -3 310 1 4313 174 156 104 chr15 47289443 47289867 -54090654 - Charlie1 DNA MER1_type -1031 1730 1329 2081 122 7 23 chr15 47289867 47290170 -54090351 - AluSx SINE Alu -14 298 1 4313 174 156 104 chr15 47290170 47290792 -54089729 - Charlie1 DNA MER1_type -1432 1329 740 2131 108 7 20 chr15 47290792 47290951 -54089570 - AluSx SINE Alu -19 293 138 1939 115 30 7 chr15 47290951 47291246 -54089275 - AluSg SINE Alu -8 302 1 2131 108 7 20 chr15 47291246 47291381 -54089140 - AluSx SINE Alu -174 138 3 4313 174 156 104 chr15 47291381 47291402 -54089119 - Charlie1 DNA MER1_type -2021 740 722 2203 108 0 3 chr15 47291402 47291708 -54088813 + AluSg SINE Alu 1 305 -5 4313 174 156 104 chr15 47291708 47291735 -54088786 - Charlie1 DNA MER1_type -2039 722 698 2245 93 14 0 chr15 47291735 47292025 -54088496 + AluSx SINE Alu 1 294 -18 4313 174 156 104 chr15 47292025 47292258 -54088263 - Charlie1 DNA MER1_type -2063 698 307 1122 185 33 65 chr15 47292347 47292623 -54087898 - LTR43 LTR ERV1 -141 461 195 1331 234 70 0 chr15 47292830 47293129 -54087392 - Charlie1 DNA MER1_type -2441 320 1 219 239 23 11 chr15 47293978 47294066 -54086455 + (CGG)n Simple_repeat Simple_repeat 1 89 0 235 233 105 83 chr15 47294389 47294586 -54085935 + MIR SINE MIR 30 229 -33 433 81 23 105 chr15 47294872 47294958 -54085563 - AluSg/x SINE Alu -17 295 217 2287 75 7 0 chr15 47294978 47295272 -54085249 - AluY SINE Alu -15 296 1 2152 92 14 3 chr15 47295286 47295570 -54084951 - AluSx SINE Alu -25 287 1 2259 106 0 20 chr15 47295946 47296249 -54084272 - AluSx SINE Alu -15 297 1 2026 107 37 23 chr15 47296767 47297066 -54083455 - AluSx SINE Alu -9 303 1 21 82 0 0 chr15 47297246 47297295 -54083226 + AT_rich Low_complexity Low_complexity 1 49 0 2173 103 0 35 chr15 47297946 47298257 -54082264 - AluSx SINE Alu -12 300 1 215 143 41 0 chr15 47298517 47298566 -54081955 + (TATG)n Simple_repeat Simple_repeat 4 54 0 411 276 188 0 chr15 47298705 47298875 -54081646 + L3 LINE CR1 1313 1514 -63 2100 98 0 21 chr15 47299122 47299408 -54081113 - AluSx SINE Alu -32 280 1 2127 139 0 0 chr15 47299657 47299960 -54080561 + AluSx SINE Alu 1 303 -9 317 201 120 19 chr15 47301075 47301179 -54079342 + L1MA10 LINE L1 6049 6324 -4 1896 139 7 13 chr15 47301217 47301518 -54079003 - AluJb SINE Alu -13 299 1 205 182 11 80 chr15 47302628 47302716 -54077805 + T-rich Low_complexity Low_complexity 3 84 0 2010 148 0 0 chr15 47303106 47303404 -54077117 + AluJb SINE Alu 1 298 -14 37 23 0 0 chr15 47303813 47303857 -54076664 + AT_rich Low_complexity Low_complexity 1 44 0 598 254 80 107 chr15 47303871 47304235 -54076286 - L1MC4a LINE L1 -1737 6071 5699 2324 94 0 3 chr15 47304235 47304533 -54075988 + AluSx SINE Alu 1 297 -15 2240 98 3 0 chr15 47304539 47304868 -54075653 + AluSp SINE Alu 1 330 0 598 254 80 107 chr15 47304868 47304908 -54075613 - L1MC4a LINE L1 -2114 5694 5670 1968 169 0 0 chr15 47305075 47305383 -54075138 + AluSx SINE Alu 1 308 -4 2591 56 0 0 chr15 47305391 47305693 -54074828 - AluY SINE Alu -9 302 1 1962 122 39 0 chr15 47305693 47305979 -54074542 - AluSg SINE Alu -13 297 1 2096 136 0 13 chr15 47306076 47306384 -54074137 - AluSq SINE Alu -9 304 1 774 165 0 24 chr15 47306428 47306555 -54073966 - FLAM_C SINE Alu -3 140 17 1870 135 0 8 chr15 47306632 47306899 -54073622 - AluSx SINE Alu -14 298 34 319 204 0 139 chr15 47306907 47307015 -54073506 - MIR SINE MIR -113 149 57 1663 175 7 29 chr15 47307324 47307633 -54072888 + AluJo SINE Alu 1 302 -10 543 253 186 9 chr15 47307953 47308050 -54072471 + MIR SINE MIR 2 81 -181 2454 75 0 10 chr15 47308050 47308358 -54072163 - AluY SINE Alu -6 305 1 543 253 186 9 chr15 47308358 47308481 -54072040 + MIR SINE MIR 81 261 -1 314 127 139 25 chr15 47309419 47309498 -54071023 + MIR SINE MIR 120 207 -55 182 353 0 0 chr15 47310701 47310769 -54069752 + MIR SINE MIR 19 86 -122 2079 106 31 14 chr15 47310914 47311206 -54069315 - AluSx SINE Alu -15 297 1 198 0 0 0 chr15 47311410 47311432 -54069089 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2019 130 0 3 chr15 47311432 47311717 -54068804 - AluSg1 SINE Alu -25 284 1 2106 108 24 0 chr15 47311883 47312171 -54068350 - AluSg SINE Alu -15 295 1 186 43 0 0 chr15 47312939 47312962 -54067559 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 279 309 209 22 chr15 47312981 47313120 -54067401 + L3 LINE CR1 1406 1570 -7 2037 128 3 7 chr15 47313559 47313849 -54066672 - AluSx SINE Alu -3 309 21 26 30 0 0 chr15 47313854 47313887 -54066634 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chr15 47315080 47315115 -54065406 + AT_rich Low_complexity Low_complexity 1 35 0 2233 95 3 0 chr15 47315354 47315648 -54064873 - AluSp SINE Alu -18 295 1 1189 192 126 53 chr15 47316519 47316569 -54063952 - MER58B DNA MER1_type -2079 341 296 2318 84 3 0 chr15 47316569 47316854 -54063667 + AluSg SINE Alu 1 286 -24 180 0 0 0 chr15 47316861 47316881 -54063640 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1189 192 126 53 chr15 47316881 47317140 -54063381 - MER58B DNA MER1_type -2129 291 1 2213 105 7 0 chr15 47317264 47317560 -54062961 - AluSx SINE Alu -14 298 1 363 188 70 102 chr15 47317577 47317705 -54062816 - L1MC4 LINE L1 -17 8025 7902 21 0 0 0 chr15 47317725 47317746 -54062775 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr15 47318149 47318171 -54062350 + AT_rich Low_complexity Low_complexity 1 22 0 335 352 116 44 chr15 47320357 47320607 -54059914 - L2 LINE L2 -20 3252 2985 197 391 14 0 chr15 47321341 47321410 -54059111 - L2 LINE L2 -49 3223 3154 25 0 0 0 chr15 47321666 47321691 -54058830 + AT_rich Low_complexity Low_complexity 1 25 0 277 253 47 30 chr15 47321710 47321845 -54058676 - L1MC4a LINE L1 0 6174 2380 2185 107 0 20 chr15 47321936 47322234 -54058287 + AluSg SINE Alu 1 292 -18 332 268 14 0 chr15 47322474 47322545 -54057976 + L2 LINE L2 3154 3225 -47 298 330 55 86 chr15 47322703 47323051 -54057470 - L2 LINE L2 -15 3257 2921 3061 223 101 47 chr15 47323299 47324212 -54056309 + L1MDa LINE L1 35 985 -5555 21 36 0 0 chr15 47324346 47324374 -54056147 + AT_rich Low_complexity Low_complexity 1 28 0 1664 124 0 0 chr15 47324473 47324698 -54055823 + AluSx SINE Alu 1 225 -87 885 179 28 17 chr15 47325148 47325327 -54055194 - MER58C DNA MER1_type -6 209 29 592 231 7 42 chr15 47326352 47326495 -54054026 + L2 LINE L2 3176 3313 0 2184 133 0 0 chr15 47327198 47327499 -54053022 - AluSx SINE Alu -11 301 1 251 176 59 20 chr15 47327874 47327976 -54052545 + (TA)n Simple_repeat Simple_repeat 2 107 0 2010 139 14 23 chr15 47328173 47328519 -54052002 - L1PA16 LINE L1 -6 6160 5818 21 36 0 0 chr15 47328693 47328721 -54051800 + AT_rich Low_complexity Low_complexity 1 28 0 462 227 10 10 chr15 47328943 47329040 -54051481 - Tigger7 DNA MER2_type -2 2585 2489 * 1381 169 89 0 chr15 47329038 47329275 -54051246 - Tigger7 DNA MER2_type -466 267 10 27 29 0 0 chr15 47331774 47331808 -54048713 + AT_rich Low_complexity Low_complexity 1 34 0 1296 65 0 0 chr15 47332171 47332326 -54048195 + AluSx SINE Alu 1 155 -157 390 98 0 0 chr15 47332327 47332403 -54048118 + Alu SINE Alu 230 305 0 2112 126 7 7 chr15 47332416 47332717 -54047804 + AluJb SINE Alu 1 301 -11 2497 64 3 0 chr15 47333973 47334271 -54046250 + AluSp SINE Alu 1 299 -14 1960 125 3 10 chr15 47334429 47334725 -54045796 + AluSx SINE Alu 19 312 0 191 241 69 0 chr15 47335827 47335885 -54044636 - MIR SINE MIR -22 240 179 2894 98 9 5 chr15 47335891 47336311 -54044210 - L1PA10 LINE L1 0 6168 5747 1822 232 45 26 chr15 47336320 47336789 -54043732 - MLT1E LTR MaLR 0 593 116 2209 129 0 0 chr15 47337000 47337309 -54043212 - AluSx SINE Alu -3 309 1 714 289 79 65 chr15 47337368 47337513 -54043008 - L1MC4 LINE L1 -125 7917 7776 2339 84 0 7 chr15 47337513 47337812 -54042709 + AluSc SINE Alu 3 299 -10 714 289 79 65 chr15 47337812 47338224 -54042297 - L1MC4 LINE L1 -266 7776 7352 668 178 54 0 chr15 47338224 47338353 -54042168 + FLAM_C SINE Alu 1 136 -7 427 252 84 0 chr15 47338353 47338508 -54042013 - L1MC4 LINE L1 -685 7357 7190 4251 173 7 18 chr15 47338610 47339340 -54041181 + MER44D DNA MER2_type 5 598 -7 269 279 0 0 chr15 47339286 47339347 -54041174 - MER2 DNA MER2_type -284 61 1 * 413 240 10 0 chr15 47339347 47339451 -54041070 - L1M2 LINE L1 -1807 5041 4937 * 1009 197 71 0 chr15 47339448 47339702 -54040819 - L1M2 LINE L1 -2402 4446 4175 207 0 0 0 chr15 47339740 47339763 -54040758 + (TTG)n Simple_repeat Simple_repeat 2 24 0 878 247 18 0 chr15 47339770 47339993 -54040528 - L1M2 LINE L1 -3232 3616 3390 6000 40 18 0 chr15 47339994 47340272 -54040249 - L1PA5 LINE L1 -17 6137 5860 1194 255 69 18 chr15 47340272 47340851 -54039670 - L1MC2 LINE L1 -486 6252 2932 2206 210 238 3 chr15 47340856 47341460 -54039061 - L1MC2 LINE L1 -5773 767 22 1951 128 80 14 chr15 47341721 47342073 -54038448 - THE1C LTR MaLR 0 375 1 1671 223 141 76 chr15 47342116 47342891 -54037630 - LTR1B LTR ERV1 0 826 2 2163 122 16 0 chr15 47342950 47343254 -54037267 - AluSx SINE Alu -3 309 1 523 275 51 11 chr15 47343258 47343436 -54037085 + MER5A DNA MER1_type 2 186 -3 2103 104 4 0 chr15 47344240 47344508 -54036013 + AluSp SINE Alu 29 297 -16 14832 188 36 15 chr15 47344508 47347300 -54033221 + L1MA4A LINE L1 2203 5166 -1779 225 0 0 0 chr15 47347300 47347325 -54033196 + (CAATA)n Simple_repeat Simple_repeat 2 26 0 14832 188 36 15 chr15 47347325 47349114 -54031407 + L1MA4A LINE L1 5166 6916 -29 243 108 27 0 chr15 47349239 47349276 -54031245 - Alu SINE Alu -263 38 1 4049 219 47 11 chr15 47349277 47350054 -54030467 - L1M2 LINE L1 -4581 2268 1445 2154 149 68 29 chr15 47350054 47350238 -54030283 + MSTA LTR MaLR 1 176 -252 333 0 0 0 chr15 47350238 47350275 -54030246 + (CA)n Simple_repeat Simple_repeat 1 37 0 2154 149 68 29 chr15 47350275 47350500 -54030021 + MSTA LTR MaLR 176 426 -2 4049 219 47 11 chr15 47350500 47350729 -54029792 - L1M2 LINE L1 -5404 1445 1226 240 204 0 0 chr15 47350738 47350782 -54029739 - LTR54B LTR ERV1 -46 452 409 609 250 93 0 chr15 47350817 47350957 -54029564 - MER21B LTR ERV1 -373 490 338 2223 105 0 10 chr15 47351203 47351499 -54029022 - AluSg SINE Alu -15 295 3 2378 85 3 3 chr15 47351814 47352119 -54028402 - AluSq SINE Alu -8 305 1 1026 231 22 6 chr15 47352469 47352825 -54027696 + MLT1D LTR MaLR 1 391 -114 246 367 75 8 chr15 47352863 47352983 -54027538 + L2 LINE L2 3128 3255 -17 1774 153 10 34 chr15 47353107 47353402 -54027119 - AluSx SINE Alu -24 288 1 1738 141 36 4 chr15 47353904 47354200 -54026321 - AluSx SINE Alu 0 305 1 21 36 0 0 chr15 47354223 47354251 -54026270 + AT_rich Low_complexity Low_complexity 1 28 0 2585 74 20 3 chr15 47354288 47354640 -54025881 - L1PA13 LINE L1 -2 6161 5804 3395 102 44 58 chr15 47354796 47354939 -54025582 - L1MA5A LINE L1 -3 6294 6150 2426 70 0 3 chr15 47354939 47355241 -54025280 - AluY SINE Alu -10 301 1 3395 102 44 58 chr15 47355241 47355736 -54024785 - L1MA5A LINE L1 -147 6150 5665 6572 185 21 26 chr15 47355737 47357481 -54023040 - L1 LINE L1 -3588 3200 1468 2219 109 0 0 chr15 47357481 47357794 -54022727 - AluSx SINE Alu 0 313 1 6572 185 21 26 chr15 47357794 47358191 -54022330 - L1 LINE L1 -5320 1468 1071 4573 175 25 24 chr15 47358691 47359252 -54021269 - L1MB1 LINE L1 -1 6167 5608 2173 132 0 0 chr15 47359252 47359548 -54020973 - AluSx SINE Alu -16 296 1 1872 167 3 3 chr15 47359549 47359842 -54020679 - AluJo SINE Alu -12 300 8 4573 175 25 24 chr15 47359842 47360406 -54020115 - L1MB1 LINE L1 -560 5608 5034 2152 113 3 0 chr15 47360406 47360688 -54019833 + AluSp SINE Alu 1 283 -30 4573 175 25 24 chr15 47360688 47361068 -54019453 - L1MB1 LINE L1 -1134 5034 4656 803 171 0 0 chr15 47361111 47361234 -54019287 + FLAM_C SINE Alu 1 123 -20 321 26 0 0 chr15 47361239 47361277 -54019244 + (GA)n Simple_repeat Simple_repeat 2 39 0 3897 186 51 16 chr15 47361277 47362199 -54018322 + L1 LINE L1 3581 4534 -1612 1143 117 0 0 chr15 47362545 47362678 -54017843 + (C)n Simple_repeat Simple_repeat 1 313 0 1143 117 0 0 chr15 47362678 47362858 -54017663 + (C)n Simple_repeat Simple_repeat 1 180 0 351 247 0 17 chr15 47362897 47363075 -54017446 + C-rich Low_complexity Low_complexity 3 177 0 36 70 0 0 chr15 47363248 47363319 -54017202 + AT_rich Low_complexity Low_complexity 1 71 0 276 267 22 22 chr15 47364026 47364116 -54016405 + L3 LINE CR1 1429 1518 -59 1390 219 102 43 chr15 47364120 47364412 -54016109 + MSTD LTR MaLR 1 321 -75 2119 125 0 0 chr15 47364412 47364693 -54015828 - AluSx SINE Alu -7 305 25 1390 219 102 43 chr15 47364693 47364774 -54015747 + MSTD LTR MaLR 321 396 0 3958 229 36 72 chr15 47364776 47366101 -54014420 + MSTD-int LTR MaLR 2 1279 -456 1852 208 97 34 chr15 47366251 47366727 -54013794 + MSTD-int LTR MaLR 1230 1735 0 2037 169 53 11 chr15 47366727 47366896 -54013625 + MSTD LTR MaLR 1 161 -235 2257 111 3 3 chr15 47366896 47367202 -54013319 + AluSp SINE Alu 1 306 -7 2037 169 53 11 chr15 47367202 47367410 -54013111 + MSTD LTR MaLR 161 394 -2 210 296 54 65 chr15 47367483 47367641 -54012880 + MER5B DNA MER1_type 2 174 -15 300 299 215 0 chr15 47367678 47367785 -54012736 - MIR3 SINE MIR -51 157 28 503 270 95 7 chr15 47367895 47368032 -54012489 + MIR SINE MIR 5 153 -109 1096 266 83 31 chr15 47368116 47368574 -54011947 - MLT1J LTR MaLR -4 507 26 21311 38 5 1 chr15 47369398 47372819 -54007702 - L1PA5 LINE L1 0 6154 2726 791 246 75 24 chr15 47373253 47373398 -54007123 - Tigger5 DNA MER2_type 0 2323 2187 2185 126 3 3 chr15 47373398 47373707 -54006814 - AluSq SINE Alu -4 309 1 791 246 75 24 chr15 47373707 47373895 -54006626 - Tigger5 DNA MER2_type -136 2187 1 220 304 38 0 chr15 47374071 47374150 -54006371 + MIR SINE MIR 181 262 0 422 276 129 9 chr15 47374218 47374450 -54006071 - MARNA DNA Mariner -307 279 20 1457 156 15 95 chr15 47375417 47375774 -54004747 - AluSx SINE Alu 0 312 1 1641 209 88 19 chr15 47375937 47376357 -54004164 - LTR16A LTR ERVL -1 449 1 254 116 0 0 chr15 47377076 47377119 -54003402 - L1MA9 LINE L1 -4 6308 6266 1020 153 20 7 chr15 47377119 47377469 -54003052 + Tigger2 DNA MER2_type 4 2704 -14 461 68 82 0 chr15 47377472 47377545 -54002976 - L1MA9 LINE L1 -41 6271 6193 279 128 0 21 chr15 47377917 47377964 -54002557 + LTR56 LTR ERV1 349 394 -51 236 102 20 0 chr15 47380387 47380436 -54000085 - L1M4 LINE L1 -1123 5023 4974 1999 135 42 0 chr15 47380489 47380778 -53999743 - AluSx SINE Alu -11 301 1 400 199 11 105 chr15 47380891 47381072 -53999449 + L1MEc LINE L1 1079 1242 -5154 2266 117 0 28 chr15 47381073 47381390 -53999131 - AluSx SINE Alu -4 308 1 194 289 141 27 chr15 47381544 47381693 -53998828 - L2 LINE L2 -1914 1400 1235 2376 99 0 0 chr15 47383442 47383734 -53996787 + AluSg SINE Alu 1 292 -18 31 26 0 0 chr15 47383838 47383876 -53996645 + AT_rich Low_complexity Low_complexity 1 38 0 413 333 64 25 chr15 47384387 47384669 -53995852 - L2 LINE L2 -5 3308 3016 1510 54 0 0 chr15 47384796 47384981 -53995540 - L1PA3 LINE L1 -2 6153 5969 1913 168 7 0 chr15 47385231 47385534 -53994987 - AluJb SINE Alu -7 305 1 22 0 0 0 chr15 47385905 47385927 -53994594 + AT_rich Low_complexity Low_complexity 1 22 0 4183 150 50 25 chr15 47386432 47386979 -53993542 - L1MB3 LINE L1 -2 6181 5604 2025 139 0 7 chr15 47386979 47387274 -53993247 - AluSx SINE Alu -19 293 1 4183 150 50 25 chr15 47387274 47387559 -53992962 - L1MB3 LINE L1 -579 5604 5328 25 31 0 0 chr15 47388040 47388072 -53992449 + AT_rich Low_complexity Low_complexity 1 32 0 26 82 0 0 chr15 47389112 47389173 -53991348 + AT_rich Low_complexity Low_complexity 1 61 0 2426 74 0 7 chr15 47389983 47390279 -53990242 - AluSp SINE Alu -19 294 1 4928 165 71 27 chr15 47391767 47392678 -53987843 - L1MC1 LINE L1 -19 6383 5514 183 100 0 0 chr15 47392678 47392708 -53987813 + (TG)n Simple_repeat Simple_repeat 1 30 0 4928 165 71 27 chr15 47392708 47393204 -53987317 - L1MC1 LINE L1 -888 5514 4915 2807 121 29 2 chr15 47393204 47393619 -53986902 - MSTB LTR MaLR 0 426 1 4928 165 71 27 chr15 47393619 47393931 -53986590 - L1MC1 LINE L1 -1487 4915 4618 3111 234 34 22 chr15 47393925 47394218 -53986303 - L1MC1 LINE L1 -1930 4285 3997 * 2406 97 3 0 chr15 47394218 47394527 -53985994 - AluSg SINE Alu 0 310 1 3111 234 34 22 chr15 47394527 47394615 -53985906 - L1MC1 LINE L1 -2218 3997 3912 2133 130 3 17 chr15 47394615 47394915 -53985606 - AluSx SINE Alu -16 296 1 3111 234 34 22 chr15 47394915 47395494 -53985027 - L1MC1 LINE L1 -2303 3912 3312 263 211 106 21 chr15 47397114 47397256 -53983265 - L1MC5 LINE L1 -36 7925 7772 697 221 43 75 chr15 47397269 47397522 -53982999 - L1ME2 LINE L1 -20 6144 5900 2352 109 0 0 chr15 47397522 47397824 -53982697 - AluSq SINE Alu -11 302 1 1730 192 21 0 chr15 47398290 47398581 -53981940 - AluJb SINE Alu -15 297 1 760 224 33 19 chr15 47398599 47398813 -53981708 + MER112 DNA MER1_type 5 221 -39 240 255 19 47 chr15 47398827 47398933 -53981588 + MLT1H LTR MaLR 431 533 -16 340 266 28 55 chr15 47399050 47399159 -53981362 + MIR3 SINE MIR 87 192 -16 907 262 104 37 chr15 47399545 47399900 -53980621 + MLT1J2 LTR MaLR 72 450 0 1286 160 101 0 chr15 47399919 47400206 -53980315 + MER33 DNA MER1_type 9 324 0 1400 217 34 118 chr15 47400452 47400607 -53979914 - L1MC1 LINE L1 -5298 1098 932 2342 80 3 3 chr15 47400607 47400906 -53979615 - AluY SINE Alu -12 299 1 1400 217 34 118 chr15 47400906 47401237 -53979284 - L1MC1 LINE L1 -5464 932 677 3274 102 4 4 chr15 47401237 47401716 -53978805 + L1PA14 LINE L1 5683 6161 0 1400 217 34 118 chr15 47401716 47401874 -53978647 - L1MC1 LINE L1 -5719 677 507 841 198 31 27 chr15 47401899 47402121 -53978400 - L1MC1 LINE L1 -6130 266 44 23 0 0 0 chr15 47402642 47402665 -53977856 + AT_rich Low_complexity Low_complexity 1 23 0 245 136 0 0 chr15 47402896 47402940 -53977581 - LTR54 LTR ERV1 -25 485 442 5620 131 23 57 chr15 47402967 47404926 -53975595 - L1MA5 LINE L1 -2 6298 4403 6848 169 90 24 chr15 47404990 47405603 -53974918 - L1PA16 LINE L1 -39 6127 5556 1857 105 3 114 chr15 47405603 47405937 -53974584 - AluSp SINE Alu -16 297 1 6848 169 90 24 chr15 47405937 47406102 -53974419 - L1PA16 LINE L1 -610 5556 5403 2556 54 0 0 chr15 47406102 47406400 -53974121 - AluY SINE Alu -13 298 1 6848 169 90 24 chr15 47406400 47408061 -53972460 - L1PA16 LINE L1 -763 5403 3492 183 42 0 0 chr15 47408061 47408085 -53972436 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6848 169 90 24 chr15 47408085 47408143 -53972378 - L1PA16 LINE L1 -2674 3492 3439 2515 265 25 15 chr15 47408135 47408890 -53971631 - L1M2 LINE L1 -5033 1816 1054 * 404 322 13 0 chr15 47409063 47409212 -53971309 - MER117 DNA MER1_type -36 161 11 2215 107 14 0 chr15 47409235 47409526 -53970995 + AluSq SINE Alu 1 295 -18 436 295 113 8 chr15 47409708 47409929 -53970592 - MIR SINE MIR -10 252 14 214 182 0 23 chr15 47410921 47410965 -53969556 + CT-rich Low_complexity Low_complexity 3 45 0 2226 105 3 16 chr15 47410969 47411274 -53969247 - AluSx SINE Alu -11 301 1 316 167 15 15 chr15 47411274 47411340 -53969181 - L1 LINE L1 -1777 5071 5006 2744 138 30 56 chr15 47411346 47411416 -53969105 - L1 LINE L1 -4399 2450 2380 2347 93 0 13 chr15 47411416 47411718 -53968803 - AluY SINE Alu -13 298 1 2744 138 30 56 chr15 47411718 47412143 -53968378 - L1 LINE L1 -4469 2380 1968 2348 108 0 0 chr15 47412143 47412439 -53968082 - AluSx SINE Alu -16 296 1 2744 138 30 56 chr15 47412439 47412500 -53968021 - L1 LINE L1 -4881 1968 1907 1946 133 53 0 chr15 47412508 47412793 -53967728 - AluSx SINE Alu -10 302 3 21983 134 24 19 chr15 47412793 47413620 -53966901 - L1 LINE L1 -3723 3842 3020 2102 59 12 4 chr15 47413620 47413873 -53966648 - AluSc SINE Alu -2 307 53 21983 134 24 19 chr15 47413873 47416699 -53963822 - L1 LINE L1 -4545 3020 173 43858 31 22 2 chr15 47416715 47422743 -53957778 - L1PA3 LINE L1 0 6155 4 1004 133 24 0 chr15 47422743 47422908 -53957613 - L1 LINE L1 -7383 182 14 11198 164 23 20 chr15 47422909 47424824 -53955697 - L1 LINE L1 -4929 1920 1 4013 211 104 17 chr15 47424823 47425054 -53955467 - L1M4 LINE L1 -1089 5057 4848 * 2110 125 33 27 chr15 47425054 47425389 -53955132 + MER1B DNA MER1_type 1 337 0 4013 211 104 17 chr15 47425389 47426221 -53954300 - L1M4 LINE L1 -1298 4848 3901 25 31 0 0 chr15 47427214 47427246 -53953275 + AT_rich Low_complexity Low_complexity 1 32 0 312 254 0 0 chr15 47427887 47427950 -53952571 + MER94 DNA DNA 72 134 0 730 215 46 76 chr15 47428236 47428434 -53952087 + LTR33A LTR ERVL 294 485 -38 1444 51 0 0 chr15 47428434 47428609 -53951912 - L1PA8 LINE L1 -7 6165 5991 730 215 46 76 chr15 47428609 47428647 -53951874 + LTR33A LTR ERVL 485 523 0 2659 95 62 61 chr15 47429956 47430312 -53950209 + MER4E LTR ERV1 1 355 -411 2451 89 0 0 chr15 47430312 47430625 -53949896 + AluSq SINE Alu 1 313 0 2659 95 62 61 chr15 47430625 47430878 -53949643 + MER4E LTR ERV1 355 766 0 204 67 0 0 chr15 47430972 47431002 -53949519 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 401 320 8 8 chr15 47434548 47434673 -53945848 - MER5A DNA MER1_type -10 179 55 286 253 30 10 chr15 47435120 47435219 -53945302 + L1MB8 LINE L1 5996 6096 -82 4614 98 45 6 chr15 47435229 47435933 -53944588 - Tigger3(Golem) DNA MER2_type -20 3009 2278 677 179 0 0 chr15 47435925 47436031 -53944490 - Tigger3(Golem) DNA MER2_type -2921 108 3 * 373 125 12 38 chr15 47436044 47436124 -53944397 + L1MB8 LINE L1 6101 6178 0 22 0 0 0 chr15 47436171 47436193 -53944328 + AT_rich Low_complexity Low_complexity 1 22 0 388 243 128 34 chr15 47436644 47436792 -53943729 - MIR3 SINE MIR -24 184 23 2397 158 21 32 chr15 47437747 47438178 -53942343 + MSTB LTR MaLR 1 426 0 1907 134 3 35 chr15 47439096 47439410 -53941111 + AluJo SINE Alu 1 304 -8 2248 115 0 0 chr15 47441996 47442304 -53938217 - AluSx SINE Alu 0 308 1 226 229 0 0 chr15 47442533 47442581 -53937940 - MIR SINE MIR -59 203 156 21 57 0 0 chr15 47443544 47443579 -53936942 + AT_rich Low_complexity Low_complexity 1 35 0 1292 225 73 31 chr15 47444147 47444569 -53935952 + HsTC2 DNA Tc2 1283 1898 0 691 297 48 23 chr15 47445253 47445563 -53934958 + MARNA DNA Mariner 255 572 -14 189 203 130 29 chr15 47445675 47445744 -53934777 + L2 LINE L2 3168 3243 -29 26 23 0 23 chr15 47445925 47445948 -53934573 + AT_rich Low_complexity Low_complexity 1 24 -19 1956 150 7 0 chr15 47445948 47446235 -53934286 + AluSx SINE Alu 1 289 -23 26 23 0 23 chr15 47446235 47446255 -53934266 + AT_rich Low_complexity Low_complexity 24 43 0 650 174 23 30 chr15 47446264 47446396 -53934125 - FLAM_A SINE Alu -2 131 1 1957 210 57 21 chr15 47446396 47446976 -53933545 - Charlie2 DNA MER1_type -32 2830 2230 1848 148 0 0 chr15 47447107 47447403 -53933118 + AluJb SINE Alu 22 317 0 546 159 91 0 chr15 47447408 47447496 -53933025 + AluJb SINE Alu 129 224 -88 23 0 0 0 chr15 47447829 47447852 -53932669 + AT_rich Low_complexity Low_complexity 1 23 0 1576 189 32 20 chr15 47447889 47448321 -53932200 + MLT1D LTR MaLR 1 497 -8 427 245 28 0 chr15 47448392 47448498 -53932023 + MER81 DNA DNA 3 111 -3 475 294 14 0 chr15 47449408 47449554 -53930967 - MER103 DNA DNA -9 157 10 272 118 0 20 chr15 47449554 47449605 -53930916 + (TA)n Simple_repeat Simple_repeat 2 51 0 2345 98 0 7 chr15 47451250 47451557 -53928964 - AluSg SINE Alu -5 305 1 1409 233 142 57 chr15 47452557 47453170 -53927351 + Charlie7 DNA MER1_type 56 720 -1892 236 270 81 86 chr15 47453281 47453455 -53927066 - L2 LINE L2 -838 2476 2304 180 313 0 12 chr15 47453468 47453548 -53926973 + L2 LINE L2 2317 2395 -919 2491 62 3 10 chr15 47453755 47454059 -53926462 - AluSg SINE Alu -8 302 1 476 311 25 0 chr15 47454783 47454953 -53925568 - MIR SINE MIR -65 143 17 422 250 45 80 chr15 47455516 47455716 -53924805 - MIR SINE MIR -43 219 27 2832 10 0 16 chr15 47455859 47456171 -53924350 + AluYa5 SINE Alu 1 307 -4 1833 299 92 27 chr15 47456683 47457243 -53923278 - L1ME LINE L1 -368 5794 5272 2193 113 3 3 chr15 47457243 47457535 -53922986 - AluSp SINE Alu -21 292 1 1833 299 92 27 chr15 47457535 47458085 -53922436 - L1ME LINE L1 -890 5272 4759 2537 75 3 0 chr15 47458085 47458390 -53922131 - AluSp SINE Alu -7 306 1 1833 299 92 27 chr15 47458390 47459354 -53921167 - L1ME LINE L1 -1403 4759 3545 249 264 78 90 chr15 47461801 47461968 -53918553 + MIR3 SINE MIR 25 189 -19 1859 149 47 90 chr15 47462666 47463110 -53917411 + MER61B LTR ERV1 1 425 0 239 208 21 0 chr15 47463335 47463383 -53917138 + MER20B DNA MER1_type 30 78 -705 200 310 113 55 chr15 47464180 47464509 -53916012 + L2 LINE L2 2832 3179 -93 1017 144 5 43 chr15 47464791 47464978 -53915543 + FRAM SINE Alu 1 174 -2 1589 236 106 35 chr15 47465076 47465706 -53914815 - HAL1 LINE L1 -127 2380 1706 256 190 228 0 chr15 47465723 47465802 -53914719 - MER58 DNA MER1_type -6 2414 2318 303 196 0 0 chr15 47465849 47465905 -53914616 - MER58 DNA MER1_type -168 56 1 782 254 70 12 chr15 47465909 47466165 -53914356 - HAL1 LINE L1 -809 1698 1428 22 0 0 0 chr15 47467137 47467159 -53913362 + AT_rich Low_complexity Low_complexity 1 22 0 4467 118 45 1 chr15 47467202 47467915 -53912606 - Tigger3(Golem) DNA MER2_type -2 3027 2284 309 227 216 0 chr15 47467916 47468004 -53912517 - Tigger3(Golem) DNA MER2_type -2922 107 1 186 43 0 0 chr15 47469278 47469301 -53911220 + (TG)n Simple_repeat Simple_repeat 1 23 0 313 284 39 58 chr15 47469355 47469510 -53911011 - L1MB8 LINE L1 -293 5885 5734 350 204 97 53 chr15 47469559 47469672 -53910849 + MIR SINE MIR 66 183 -79 228 355 139 33 chr15 47469699 47470153 -53910368 - L2 LINE L2 -853 2461 1960 21 0 0 0 chr15 47470716 47470737 -53909784 + AT_rich Low_complexity Low_complexity 1 21 0 692 271 104 5 chr15 47471654 47471875 -53908646 + MIR SINE MIR 15 257 -5 1909 98 83 0 chr15 47471986 47472262 -53908259 - AluSx SINE Alu -13 299 1 207 0 0 0 chr15 47473014 47473037 -53907484 + (TA)n Simple_repeat Simple_repeat 2 24 0 1316 239 92 66 chr15 47473887 47474309 -53906212 + LTR16A LTR ERVL 18 450 0 252 200 0 0 chr15 47474309 47474364 -53906157 + (TCCA)n Simple_repeat Simple_repeat 1 55 0 182 191 88 88 chr15 47474400 47474468 -53906053 - L2 LINE L2 -62 3210 3143 182 348 42 59 chr15 47474568 47474686 -53905835 + L2 LINE L2 3112 3227 -45 396 59 0 0 chr15 47476771 47476822 -53903699 + (CA)n Simple_repeat Simple_repeat 1 51 0 502 245 260 10 chr15 47477007 47477207 -53903314 - MIR SINE MIR 0 262 13 211 258 200 17 chr15 47478425 47478545 -53901976 + MIR SINE MIR 63 204 -58 202 194 28 46 chr15 47479765 47479873 -53900648 + (CGG)n Simple_repeat Simple_repeat 2 107 0 272 263 21 32 chr15 47480298 47480393 -53900128 + G-rich Low_complexity Low_complexity 5 98 0 397 270 68 33 chr15 47481096 47481285 -53899236 - MIR SINE MIR -14 194 1 420 257 181 7 chr15 47481470 47481614 -53898907 + MIR SINE MIR 82 250 -12 2342 87 3 0 chr15 47481705 47482016 -53898505 + AluSp SINE Alu 1 312 -1 370 248 101 31 chr15 47483712 47483841 -53896680 - L1ME4a LINE L1 -7 6114 5977 826 244 65 0 chr15 47483862 47484091 -53896430 - L1ME4a LINE L1 -224 5897 5654 194 192 19 0 chr15 47484519 47484571 -53895950 + GA-rich Low_complexity Low_complexity 2 54 0 521 291 271 63 chr15 47485006 47485978 -53894543 + L3 LINE CR1 191 1364 -213 1336 231 134 26 chr15 47486007 47486436 -53894085 + LTR33A LTR ERVL 44 490 -33 2198 107 3 0 chr15 47486436 47486745 -53893776 + AluSp SINE Alu 2 311 -2 2432 74 0 0 chr15 47486760 47487071 -53893450 + AluY SINE Alu 1 311 0 372 217 94 38 chr15 47487231 47487337 -53893184 - MIR SINE MIR -79 129 18 493 282 127 0 chr15 47487674 47487816 -53892705 - MIR3 SINE MIR -29 179 20 216 273 0 0 chr15 47488074 47488151 -53892370 + CT-rich Low_complexity Low_complexity 3 79 0 222 323 68 53 chr15 47489122 47489459 -53891062 + L2 LINE L2 2367 2708 -606 393 214 48 0 chr15 47490947 47491031 -53889490 + LTR16C LTR ERVL 404 491 0 270 0 0 0 chr15 47491513 47491543 -53888978 + (T)n Simple_repeat Simple_repeat 1 30 0 1492 224 21 45 chr15 47492021 47492400 -53888121 + MLT1A2 LTR MaLR 1 370 -4 1268 256 96 54 chr15 47492597 47493168 -53887353 + MLT1G1 LTR MaLR 1 595 0 234 293 9 69 chr15 47493821 47493937 -53886584 - MIR SINE MIR -6 256 148 947 291 76 20 chr15 47495072 47495532 -53884989 - L2 LINE L2 -2 3311 2826 769 210 117 37 chr15 47496024 47496238 -53884283 - MIR SINE MIR -13 249 19 239 313 0 30 chr15 47496737 47496804 -53883717 - L2 LINE L2 -21 3251 3187 1913 100 25 62 chr15 47497777 47498097 -53882424 - AluSg SINE Alu -2 308 1 261 335 148 29 chr15 47498675 47499054 -53881467 + L2 LINE L2 2548 2971 -343 238 329 14 0 chr15 47499261 47499334 -53881187 + L2 LINE L2 3226 3299 -14 210 71 0 0 chr15 47499335 47499363 -53881158 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 193 285 215 38 chr15 47499633 47499819 -53880702 + L3 LINE CR1 1344 1562 -15 1181 167 29 9 chr15 47500238 47500448 -53880073 - MER20 DNA MER1_type -5 214 1 506 288 151 14 chr15 47500573 47500792 -53879729 + MIR SINE MIR 14 262 0 701 234 20 50 chr15 47500870 47501071 -53879450 - MLT1J2 LTR MaLR -2 448 254 651 191 22 7 chr15 47501115 47501251 -53879270 - MER103 DNA DNA -9 157 20 1961 142 0 7 chr15 47501265 47501561 -53878960 + AluSx SINE Alu 1 294 -18 260 143 0 41 chr15 47501665 47501714 -53878807 - L2 LINE L2 -573 2741 2695 268 257 80 9 chr15 47501819 47501932 -53878589 - L1ME LINE L1 -225 5896 5776 584 212 58 0 chr15 47502235 47502372 -53878149 + L1MC4 LINE L1 7414 7558 -484 294 85 0 21 chr15 47502365 47502412 -53878109 + L1MC4 LINE L1 7996 8041 -1 * 5032 11 0 0 chr15 47503641 47504198 -53876323 + L1PA2 LINE L1 5599 6155 0 184 188 118 71 chr15 47504548 47504633 -53875888 - L3 LINE CR1 -144 1433 1345 229 330 62 0 chr15 47505352 47505449 -53875072 + MIR SINE MIR 99 201 -61 1728 215 92 10 chr15 47505535 47505949 -53874572 - MER39 LTR ERV1 0 707 260 352 228 30 40 chr15 47505923 47506024 -53874497 - LTR48B LTR ERV1 -544 100 1 * 436 282 72 28 chr15 47506057 47506238 -53874283 - MER5A DNA MER1_type 0 189 1 500 246 78 24 chr15 47506243 47506410 -53874111 - MIR3 SINE MIR 0 208 33 400 284 47 62 chr15 47506757 47506968 -53873553 - L1ME3A LINE L1 -1 6169 5962 2164 233 72 65 chr15 47507060 47507959 -53872562 - L1MC5 LINE L1 -431 7530 6625 264 30 0 0 chr15 47507963 47507996 -53872525 + (CA)n Simple_repeat Simple_repeat 1 33 0 241 151 19 0 chr15 47508063 47508116 -53872405 - L1MD3 LINE L1 -2 7993 7940 325 326 16 64 chr15 47508263 47508450 -53872071 - HAL1b LINE L1 -1158 190 13 24 0 0 0 chr15 47508467 47508491 -53872030 + AT_rich Low_complexity Low_complexity 1 24 0 3104 86 17 0 chr15 47508528 47508947 -53871574 - L1PA10 LINE L1 0 6168 5743 263 212 61 8 chr15 47508947 47509079 -53871442 + (TA)n Simple_repeat Simple_repeat 2 140 0 802 170 14 0 chr15 47509121 47509268 -53871253 - FRAM SINE Alu -15 161 13 546 229 0 76 chr15 47510429 47510495 -53870026 - MIR SINE MIR 0 262 193 198 0 0 0 chr15 47510495 47510517 -53870004 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1953 121 11 4 chr15 47510519 47510799 -53869722 - AluSx SINE Alu -30 282 1 546 229 0 76 chr15 47510799 47510886 -53869635 - MIR SINE MIR -70 192 118 791 258 176 34 chr15 47511125 47511482 -53869039 + MLT1J LTR MaLR 100 507 -4 445 309 102 71 chr15 47511548 47512217 -53868304 - L2 LINE L2 -257 3056 2311 1971 223 31 4 chr15 47512217 47512671 -53867850 - MLT1C LTR MaLR -1 466 1 445 309 102 71 chr15 47512671 47512775 -53867746 - L2 LINE L2 -1002 2311 2212 672 181 58 7 chr15 47513530 47513685 -53866836 - L1MB7 LINE L1 0 6184 6022 416 259 42 62 chr15 47513694 47513887 -53866634 + MIR SINE MIR 58 246 -16 224 182 36 0 chr15 47514021 47514076 -53866445 + (CA)n Simple_repeat Simple_repeat 2 58 0 300 296 17 17 chr15 47514478 47514593 -53865928 - MIR SINE MIR -100 162 48 316 329 14 21 chr15 47514736 47514879 -53865642 + MER5B DNA MER1_type 1 142 -36 1012 265 102 17 chr15 47515029 47515441 -53865080 - MLT1J2 LTR MaLR 0 450 4 765 303 70 24 chr15 47515456 47516041 -53864480 + L1ME4a LINE L1 5279 5905 -216 192 40 0 0 chr15 47516101 47516126 -53864395 + (CAT)n Simple_repeat Simple_repeat 3 27 0 603 40 0 0 chr15 47516326 47516400 -53864121 + (TA)n Simple_repeat Simple_repeat 1 74 0 182 200 0 0 chr15 47516401 47516441 -53864080 + MIR SINE MIR 82 121 -87 330 200 61 128 chr15 47516486 47516666 -53863855 + L1ME4a LINE L1 5927 6094 -27 302 225 0 0 chr15 47517036 47517107 -53863414 + MIR SINE MIR 50 120 -142 1656 191 26 59 chr15 47517417 47517804 -53862717 + MLT1A2 LTR MaLR 1 374 0 653 245 27 21 chr15 47518061 47518249 -53862272 + Charlie8 DNA MER1_type 97 285 -2132 581 247 22 28 chr15 47518474 47518652 -53861869 - MIR3 SINE MIR -17 191 15 438 301 66 18 chr15 47519268 47519434 -53861087 + MIR SINE MIR 12 185 -77 1911 161 133 26 chr15 47519492 47519913 -53860608 + MER31B LTR ERV1 1 466 0 807 166 18 71 chr15 47520825 47520994 -53859527 + LTR16C LTR ERVL 310 469 -22 239 329 79 0 chr15 47521559 47521699 -53858822 - MIR SINE MIR -72 190 40 507 152 0 0 chr15 47521713 47521792 -53858729 - AluJ/FLAM SINE Alu -232 80 2 252 286 0 0 chr15 47522727 47522790 -53857731 + L2 LINE L2 3208 3270 -2 205 264 0 0 chr15 47523506 47523559 -53856962 - MIR3 SINE MIR -15 193 141 230 235 143 0 chr15 47523559 47523610 -53856911 - L1M4 LINE L1 -3264 2882 2840 432 116 0 35 chr15 47523610 47523696 -53856825 - L1MB8 LINE L1 0 6178 6096 230 235 143 0 chr15 47523696 47523742 -53856779 - L1M4 LINE L1 -3306 2840 2771 * 4410 150 18 23 chr15 47523713 47524507 -53856014 - L1MB4 LINE L1 -6 6174 5385 6255 70 8 11 chr15 47524548 47525353 -53855168 - L1PA10 LINE L1 0 6168 5367 4598 116 17 16 chr15 47525359 47526065 -53854456 + L1P LINE L1 4491 5197 -949 9636 136 10 20 chr15 47526068 47527697 -53852824 - L1P LINE L1 -2540 3606 1994 513 144 0 11 chr15 47527674 47527764 -53852757 - L1MB4 LINE L1 -775 5403 5315 * 1083 108 40 6 chr15 47527770 47527946 -53852575 - L1MA8 LINE L1 -4 6287 6106 864 133 0 0 chr15 47527949 47528069 -53852452 + AluJb SINE Alu 178 297 -15 435 85 0 0 chr15 47528070 47528129 -53852392 - L1MA8 LINE L1 -182 6109 6051 1793 249 65 26 chr15 47528134 47528922 -53851599 - L1MEc LINE L1 -3311 2904 2134 21 0 0 0 chr15 47528925 47528946 -53851575 + AT_rich Low_complexity Low_complexity 1 21 0 1133 175 47 5 chr15 47528947 47529158 -53851363 - L1MB5 LINE L1 -9 6165 5946 2260 108 0 10 chr15 47529643 47529949 -53850572 - AluSx SINE Alu -5 307 5 412 319 15 7 chr15 47529976 47530111 -53850410 - MIR3 SINE MIR -52 156 21 211 309 0 0 chr15 47530170 47530225 -53850296 - L2 LINE L2 0 3272 3218 617 238 33 41 chr15 47530243 47530487 -53850034 - L1MEc LINE L1 -4920 1476 1235 367 246 46 15 chr15 47530538 47530668 -53849853 - MLT1J LTR MaLR 0 511 378 406 299 28 35 chr15 47530739 47530883 -53849638 - MLT1J LTR MaLR -260 251 109 1116 212 0 5 chr15 47530889 47531101 -53849420 - AluJo SINE Alu -17 295 85 2404 48 38 3 chr15 47531113 47531403 -53849118 - AluY SINE Alu -11 300 1 465 272 0 9 chr15 47531403 47531517 -53849004 - MLT1J LTR MaLR -398 113 1 207 412 17 0 chr15 47531569 47531688 -53848833 - L2 LINE L2 -215 3057 2937 1876 164 3 7 chr15 47532392 47532696 -53847825 - AluJb SINE Alu -6 306 4 360 212 93 8 chr15 47532709 47532827 -53847694 - L1ME4a LINE L1 -6 6115 5988 611 274 17 0 chr15 47532878 47533053 -53847468 - MIR SINE MIR -3 259 82 800 208 81 60 chr15 47533086 47533456 -53847065 - L1MC5 LINE L1 -25 7936 7559 280 275 186 21 chr15 47533869 47534062 -53846459 - L2 LINE L2 -3 3310 3086 891 309 72 33 chr15 47535186 47535548 -53844973 - L1MC4a LINE L1 -1902 5906 5508 5705 111 40 8 chr15 47535548 47537007 -53843514 + L1PA16 LINE L1 4678 6166 0 891 309 72 33 chr15 47537007 47537272 -53843249 - L1MC4a LINE L1 -2300 5508 5255 1377 245 81 7 chr15 47537874 47538306 -53842215 - MER113 DNA MER1_type? -19 502 39 645 159 0 0 chr15 47538525 47538632 -53841889 - FRAM SINE Alu 0 176 70 1606 239 37 26 chr15 47539072 47539153 -53841368 + L1ME3A LINE L1 5700 5779 -391 2168 181 62 2 chr15 47539153 47539557 -53840964 - MSTA LTR MaLR 0 428 1 1606 239 37 26 chr15 47539557 47539936 -53840585 + L1ME3A LINE L1 5779 6165 -5 1561 204 22 20 chr15 47542012 47542333 -53838188 + MLT1A2 LTR MaLR 21 534 -33 446 278 92 9 chr15 47542435 47542662 -53837859 - MIR SINE MIR -14 248 3 270 172 69 0 chr15 47543670 47543728 -53836793 - MIR SINE MIR -88 174 113 304 210 25 0 chr15 47543950 47544031 -53836490 + MIR3 SINE MIR 107 189 -19 301 258 43 32 chr15 47544515 47544608 -53835913 + MIR3 SINE MIR 70 163 -45 1018 203 6 0 chr15 47544662 47544839 -53835682 + MER45A DNA AcHobo 1 178 0 512 285 44 18 chr15 47546216 47546502 -53834019 - LTR16A LTR ERVL -14 436 114 287 309 0 86 chr15 47546928 47547090 -53833431 + L2 LINE L2 2907 3054 -218 345 325 40 0 chr15 47548746 47548872 -53831649 + MIR SINE MIR 62 192 -70 311 220 0 0 chr15 47549434 47549493 -53831028 - AluS SINE Alu -244 59 1 2139 131 0 3 chr15 47550121 47550419 -53830102 - AluSq SINE Alu -16 297 1 289 260 10 62 chr15 47550623 47550719 -53829802 + L1ME LINE L1 4487 4577 -1569 496 319 110 42 chr15 47550745 47551335 -53829186 + L1ME LINE L1 4642 5271 -875 403 206 75 34 chr15 47551394 47551540 -53828981 + L1ME LINE L1 5319 5470 -2338 656 214 0 7 chr15 47551703 47551843 -53828678 + L1MC4a LINE L1 7141 7279 -529 919 214 116 10 chr15 47551880 47552121 -53828400 + MLT1G LTR MaLR 343 590 0 791 140 30 35 chr15 47552121 47552310 -53828211 - L1MC4 LINE L1 -685 7357 7125 2101 128 0 19 chr15 47552310 47552622 -53827899 - AluSx SINE Alu -6 306 1 2922 262 112 42 chr15 47552629 47554177 -53826344 - L1MD3 LINE L1 -948 7047 5391 419 213 107 40 chr15 47554677 47554827 -53825694 - MIR SINE MIR -69 193 34 407 215 243 23 chr15 47557582 47557759 -53822762 + L1ME LINE L1 5550 5765 -356 1625 82 4 35 chr15 47557846 47558078 -53822443 + AluY SINE Alu 84 308 -3 604 246 14 0 chr15 47558142 47558280 -53822241 - MER46C DNA MER2_type -114 224 85 639 35 0 0 chr15 47558595 47558693 -53821828 + L1PA2 LINE L1 10 380 -6081 * 38243 35 25 2 chr15 47558660 47564104 -53816417 + L1PA2 LINE L1 893 6468 -2 24 0 0 0 chr15 47564104 47564128 -53816393 + AT_rich Low_complexity Low_complexity 1 24 0 238 291 23 0 chr15 47564450 47564536 -53815985 + LTR37B LTR ERV1 111 198 -270 1020 233 15 22 chr15 47564584 47564855 -53815666 + LTR37B LTR ERV1 200 468 0 269 241 0 0 chr15 47565129 47565187 -53815334 - L2 LINE L2 0 3313 3256 2178 212 33 26 chr15 47565514 47565972 -53814549 - MLT1F LTR MaLR -79 463 3 848 241 133 60 chr15 47565981 47566395 -53814126 - MLT1J LTR MaLR -46 465 22 373 206 272 7 chr15 47566633 47566769 -53813752 - MIR SINE MIR -71 191 20 435 236 161 12 chr15 47568290 47568451 -53812070 - MIR SINE MIR 0 262 78 1411 278 62 24 chr15 47569827 47570294 -53810227 - LTR16C LTR ERVL 0 491 7 495 201 67 22 chr15 47570701 47570835 -53809686 - MLT1L LTR MaLR 0 615 476 1179 201 138 56 chr15 47570959 47571303 -53809218 + MLT1G LTR MaLR 178 590 0 1393 276 81 16 chr15 47571612 47572323 -53808198 + L2 LINE L2 2539 3311 -2 1902 139 48 0 chr15 47572701 47573027 -53807494 + AluJo SINE Alu 4 343 0 288 282 26 77 chr15 47573323 47573479 -53807042 - MIR SINE MIR -45 217 70 187 154 0 51 chr15 47573689 47573728 -53806793 + MIR SINE MIR 46 82 -180 708 214 29 29 chr15 47574336 47574546 -53805975 - LTR37A LTR ERV1 0 426 217 437 214 159 8 chr15 47574573 47574699 -53805822 - L1ME3A LINE L1 -297 5873 5729 252 0 0 0 chr15 47575474 47575502 -53805019 + (T)n Simple_repeat Simple_repeat 1 28 0 228 231 0 0 chr15 47575957 47576009 -53804512 + L2 LINE L2 3262 3313 0 341 272 231 0 chr15 47576037 47576206 -53804315 - MIR SINE MIR -8 254 47 226 232 61 12 chr15 47576805 47576887 -53803634 + MIR3 SINE MIR 109 194 -14 322 200 74 0 chr15 47577567 47577662 -53802859 - MER5C DNA MER1_type -18 306 205 1983 146 3 13 chr15 47577687 47578165 -53802356 - AluSx SINE Alu 0 475 1 369 259 62 0 chr15 47578220 47578332 -53802189 - MER5C DNA MER1_type -200 124 6 314 244 184 95 chr15 47578989 47579157 -53801364 - MARNA DNA Mariner -4 582 400 1085 198 14 9 chr15 47581337 47581554 -53798967 + AluJo SINE Alu 79 296 -16 3453 152 109 8 chr15 47581565 47582235 -53798286 + L1MB3 LINE L1 5444 6181 -2 236 306 51 20 chr15 47582762 47582860 -53797661 + MIR3 SINE MIR 13 113 -95 360 304 40 0 chr15 47583276 47583401 -53797120 + L2 LINE L2 2639 2768 -546 850 230 14 48 chr15 47583413 47583622 -53796899 + MER63A DNA MER1_type 1 202 -8 620 295 159 6 chr15 47583773 47584132 -53796389 + L2 LINE L2 2900 3313 0 329 213 13 13 chr15 47584557 47584632 -53795889 - MIR SINE MIR -122 140 66 2236 91 31 0 chr15 47584901 47585187 -53795334 - AluSq SINE Alu -18 295 1 198 0 0 0 chr15 47585218 47585240 -53795281 + (A)n Simple_repeat Simple_repeat 1 22 0 338 280 173 7 chr15 47585599 47585749 -53794772 - MER5A DNA MER1_type 0 189 15 374 202 43 0 chr15 47585776 47585870 -53794651 + MER5A DNA MER1_type 9 106 -83 324 247 31 31 chr15 47585962 47586059 -53794462 + MLT1C LTR MaLR 1 97 -408 1211 196 29 82 chr15 47586160 47586537 -53793984 + MLT1C LTR MaLR 111 467 0 236 163 0 0 chr15 47587603 47587646 -53792875 - L2 LINE L2 -6 3266 3224 182 267 83 0 chr15 47588075 47588135 -53792386 + MIR SINE MIR 134 198 -64 336 223 36 62 chr15 47589226 47589338 -53791183 + MER102b DNA MER1_type 232 340 -1 297 68 0 0 chr15 47589581 47589625 -53790896 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 719 195 0 0 chr15 47589625 47589743 -53790778 - FRAM SINE Alu -27 149 32 189 167 62 0 chr15 47589872 47589920 -53790601 + MIR SINE MIR 141 191 -71 214 284 62 57 chr15 47590749 47590925 -53789596 + MIR SINE MIR 22 198 -64 504 282 46 11 chr15 47591033 47591207 -53789314 - MIR SINE MIR -19 243 64 191 279 0 0 chr15 47591223 47591266 -53789255 - MIR3 SINE MIR -11 197 155 260 122 0 0 chr15 47595223 47595264 -53785257 + L2 LINE L2 3263 3303 -10 518 286 101 29 chr15 47596368 47596667 -53783854 + Charlie8 DNA MER1_type 9 1427 -990 347 263 17 34 chr15 47597487 47597605 -53782916 + L2 LINE L2 3137 3252 -20 2258 112 0 13 chr15 47599925 47600230 -53780291 - AluSx SINE Alu -11 301 1 185 265 235 15 chr15 47600419 47600551 -53779970 + MIR3 SINE MIR 2 162 -46 234 309 31 0 chr15 47601367 47601464 -53779057 - MIR SINE MIR -6 256 157 246 335 67 30 chr15 47602896 47603060 -53777461 - MIR SINE MIR -27 235 66 1061 259 26 47 chr15 47603610 47603993 -53776528 + L2 LINE L2 2939 3313 0 1555 188 15 3 chr15 47604091 47604421 -53776100 - L1MA4 LINE L1 -5 6295 5962 245 106 0 43 chr15 47605474 47605521 -53775000 + (TATG)n Simple_repeat Simple_repeat 2 46 0 21 71 0 0 chr15 47606283 47606325 -53774196 + AT_rich Low_complexity Low_complexity 1 42 0 197 309 55 0 chr15 47606666 47606721 -53773800 + L2 LINE L2 3122 3179 -93 243 0 0 0 chr15 47606791 47606818 -53773703 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 315 49 0 0 chr15 47607086 47607127 -53773394 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 387 0 0 0 chr15 47607126 47607169 -53773352 + (CA)n Simple_repeat Simple_repeat 1 43 0 387 339 57 13 chr15 47608139 47608369 -53772152 + L2 LINE L2 2606 2845 -469 217 316 132 0 chr15 47608678 47608754 -53771767 + L2 LINE L2 3133 3218 -54 582 237 28 28 chr15 47608926 47609103 -53771418 - MIR SINE MIR -46 216 40 1944 179 44 71 chr15 47609184 47609353 -53771168 + MLT1D LTR MaLR 2 174 -331 2429 81 0 0 chr15 47609353 47609649 -53770872 + AluY SINE Alu 14 309 -2 1944 179 44 71 chr15 47609649 47609997 -53770524 + MLT1D LTR MaLR 174 505 0 289 297 65 14 chr15 47610357 47610495 -53770026 + MIR3 SINE MIR 59 203 -5 337 247 186 10 chr15 47610712 47610880 -53769641 + MIR SINE MIR 51 259 -3 1554 173 0 22 chr15 47610927 47611235 -53769286 + AluJb SINE Alu 11 312 0 25 31 0 0 chr15 47612748 47612780 -53767741 + AT_rich Low_complexity Low_complexity 1 32 0 1101 152 0 0 chr15 47612780 47612938 -53767583 + AluJb SINE Alu 141 298 -14 207 0 0 0 chr15 47613092 47613115 -53767406 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2224 121 0 10 chr15 47614147 47614454 -53766067 - AluSx SINE Alu -8 304 1 352 141 113 0 chr15 47614495 47614566 -53765955 + L2 LINE L2 951 1029 -2285 508 272 66 3 chr15 47614568 47614892 -53765629 + L1MC4 LINE L1 7281 7575 -467 4209 231 186 41 chr15 47614973 47616768 -53763753 + L2 LINE L2 1022 3168 -145 687 170 9 0 chr15 47616768 47616880 -53763641 - MER81 DNA DNA -1 113 1 4209 231 186 41 chr15 47616880 47617045 -53763476 + L2 LINE L2 3168 3308 -5 191 236 0 73 chr15 47617079 47617134 -53763387 + L2 LINE L2 3221 3271 -1 672 225 24 6 chr15 47618277 47618432 -53762089 - MER5B DNA MER1_type -26 163 3 1068 162 22 0 chr15 47618790 47618975 -53761546 - MER5A DNA MER1_type 0 189 1 324 213 0 0 chr15 47619903 47619964 -53760557 - AluJ/monomer SINE Alu -3 299 239 207 0 0 0 chr15 47620685 47620708 -53759813 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 243 227 0 0 chr15 47621928 47621972 -53758549 + L2 LINE L2 3266 3309 -4 1131 104 0 0 chr15 47622031 47622185 -53758336 - AluSg/x SINE Alu -22 290 137 895 279 20 24 chr15 47622838 47623132 -53757389 + L1ME3A LINE L1 5664 5956 -214 196 320 247 0 chr15 47623825 47623922 -53756599 + MIR SINE MIR 46 166 -96 220 306 42 28 chr15 47624338 47624410 -53756111 + MIR3 SINE MIR 95 167 -41 348 203 0 0 chr15 47624433 47624497 -53756024 + MIR3 SINE MIR 93 156 -52 253 185 0 141 chr15 47624504 47624596 -53755925 + MER5B DNA MER1_type 3 81 -97 335 285 60 53 chr15 47624794 47624945 -53755576 + MER5A DNA MER1_type 34 185 -4 21 0 0 0 chr15 47627038 47627059 -53753462 + AT_rich Low_complexity Low_complexity 1 21 0 2824 143 32 23 chr15 47627258 47627783 -53752738 + Tigger6 DNA MER2_type 1068 1597 0 957 34 8 0 chr15 47627913 47628031 -53752490 - L1PA2 LINE L1 0 6155 6037 1971 12 17 0 chr15 47628031 47628271 -53752250 + L1P LINE L1 5079 5322 -824 1075 258 29 0 chr15 47628281 47628525 -53751996 - MIR SINE MIR -10 252 2 196 194 0 0 chr15 47628636 47628672 -53751849 - MIR3 SINE MIR -16 192 157 331 235 113 35 chr15 47630577 47630692 -53749829 + L2 LINE L2 3137 3260 -12 2095 104 0 29 chr15 47630906 47631213 -53749308 - AluSx SINE Alu -14 298 1 221 339 32 57 chr15 47631679 47631803 -53748718 - MIR3 SINE MIR -2 206 86 180 326 43 22 chr15 47632233 47632325 -53748196 + L2 LINE L2 3171 3264 -8 335 275 51 51 chr15 47633425 47633563 -53746958 + L2 LINE L2 3134 3271 -1 318 250 114 11 chr15 47633855 47633943 -53746578 + MIR3 SINE MIR 100 196 -12 406 290 48 14 chr15 47635099 47635244 -53745277 + MIR SINE MIR 112 261 -1 349 264 88 31 chr15 47636234 47636393 -53744128 + MARNA DNA Mariner 210 377 -209 305 255 60 65 chr15 47636473 47636747 -53743774 - L1MEd LINE L1 -1242 1265 984 317 223 18 62 chr15 47637029 47637141 -53743380 - L2 LINE L2 -249 3023 2917 452 337 39 24 chr15 47638558 47638763 -53741758 + MIR SINE MIR 55 262 0 549 194 28 0 chr15 47638917 47639025 -53741496 - MER94 DNA DNA -20 114 4 351 197 102 47 chr15 47639152 47639279 -53741242 - MIR SINE MIR -55 207 74 639 259 161 5 chr15 47639898 47640091 -53740430 - MIR SINE MIR 0 262 40 205 357 0 20 chr15 47640965 47641063 -53739458 + MIR SINE MIR 58 153 -109 457 301 57 46 chr15 47643107 47643389 -53737132 + MER102a DNA MER1_type 36 320 -10 366 247 54 21 chr15 47643782 47643875 -53736646 - MIR SINE MIR -83 125 30 733 223 147 5 chr15 47644787 47644984 -53735537 - MER45C DNA AcHobo -4 949 725 840 202 122 53 chr15 47645053 47645315 -53735206 - MER45C DNA AcHobo -673 280 1 374 259 14 29 chr15 47645595 47645612 -53734909 - L1MA10 LINE L1 -4 6330 6314 2441 208 105 45 chr15 47645612 47647003 -53733518 - L1ME1 LINE L1 -12 6154 4681 1323 283 60 8 chr15 47647075 47647475 -53733046 + LTR16B LTR ERVL 44 464 0 973 229 96 42 chr15 47647480 47647833 -53732688 - L1ME1 LINE L1 -1517 4629 4258 306 319 97 7 chr15 47648119 47648263 -53732258 - MIR SINE MIR -86 176 20 306 365 39 0 chr15 47649817 47649921 -53730600 + L2 LINE L2 3145 3252 -20 340 227 82 18 chr15 47649976 47650086 -53730435 + MIR SINE MIR 117 233 -29 1948 113 32 3 chr15 47650462 47650744 -53729777 - AluSg SINE Alu -20 290 1 199 258 11 90 chr15 47650911 47651000 -53729521 + MIR SINE MIR 72 153 -109 374 248 159 15 chr15 47651034 47651185 -53729336 + MIR3 SINE MIR 5 179 -29 1924 125 4 4 chr15 47651219 47651499 -53729022 + AluSq SINE Alu 1 280 -33 216 0 0 0 chr15 47651499 47651523 -53728998 + (CA)n Simple_repeat Simple_repeat 1 24 0 184 338 95 0 chr15 47652098 47652172 -53728349 + MIR SINE MIR 38 118 -90 404 317 106 22 chr15 47652962 47653142 -53727379 + MIR SINE MIR 20 214 -48 310 123 46 0 chr15 47654513 47654578 -53725943 + GA-rich Low_complexity Low_complexity 2 69 0 198 0 0 0 chr15 47655450 47655472 -53725049 + (T)n Simple_repeat Simple_repeat 1 22 0 2022 57 92 11 chr15 47657610 47657893 -53722628 - AluY SINE Alu -5 306 1 2580 74 9 236 chr15 47659739 47660184 -53720337 + LTR14B LTR ERVK 1 608 0 6201 65 10 0 chr15 47660184 47660957 -53719564 + HERVK14 LTR ERVK 1 781 -5164 9029 77 11 0 chr15 47660982 47662115 -53718406 + HERVK14 LTR ERVK 1384 2528 -3417 3445 80 20 3 chr15 47662099 47662611 -53717910 + HERVK14 LTR ERVK 4847 5429 -1814 * 1350 48 116 21 chr15 47662599 47662788 -53717733 + HERVK14 LTR ERVK 5558 5764 -181 * 374 157 0 20 chr15 47662788 47662858 -53717663 + MER41C LTR ERV1 6 61 -493 750 42 0 93 chr15 47662858 47662976 -53717545 + HERVK14 LTR ERVK 5835 5941 -4 2420 82 25 238 chr15 47662983 47663420 -53717101 + LTR14B LTR ERVK 1 608 0 229 346 94 24 chr15 47665544 47665671 -53714850 + L2 LINE L2 3136 3271 -1 348 137 0 0 chr15 47667660 47667711 -53712810 + MIR SINE MIR 210 260 -2 222 220 85 0 chr15 47669014 47669073 -53711448 - MIR SINE MIR -170 92 29 192 40 0 0 chr15 47669508 47669533 -53710988 + (CAGT)n Simple_repeat Simple_repeat 3 27 0 188 280 19 75 chr15 47669533 47669640 -53710881 - L2 LINE L2 -1488 1826 1726 274 272 228 0 chr15 47670142 47670256 -53710265 + MER91A DNA MER1_type 57 196 0 1345 84 6 0 chr15 47670582 47670760 -53709761 + L1PB1 LINE L1 5967 6145 -6 5501 80 20 33 chr15 47671030 47672494 -53708027 + SVA Other Other 7 1046 -340 28 0 0 0 chr15 47672632 47672660 -53707861 + AT_rich Low_complexity Low_complexity 1 28 0 335 280 45 53 chr15 47672951 47673083 -53707438 + L2 LINE L2 3134 3264 -8 275 278 225 7 chr15 47674631 47674782 -53705739 - MIR3 SINE MIR -6 202 19 468 0 0 0 chr15 47675313 47675365 -53705156 + (CA)n Simple_repeat Simple_repeat 2 53 0 302 246 117 95 chr15 47675931 47676110 -53704411 + MIR3 SINE MIR 17 199 -9 402 268 38 81 chr15 47677255 47677464 -53703057 - L2 LINE L2 -110 3162 2963 403 340 85 10 chr15 47680198 47680398 -53700123 + L2 LINE L2 2994 3208 -64 250 241 89 0 chr15 47682009 47682088 -53698433 + L1ME4a LINE L1 5996 6081 -40 22 0 0 0 chr15 47682269 47682291 -53698230 + AT_rich Low_complexity Low_complexity 1 22 0 2389 84 0 0 chr15 47682385 47682694 -53697827 - AluSq SINE Alu -4 309 1 355 135 233 135 chr15 47682987 47683055 -53697466 + MLT1E2 LTR MaLR 481 541 -85 2113 119 0 0 chr15 47683055 47683349 -53697172 - AluSx SINE Alu -12 300 7 355 135 233 135 chr15 47683349 47683413 -53697108 + MLT1E2 LTR MaLR 541 626 0 181 143 0 0 chr15 47684594 47684622 -53695899 - L2 LINE L2 -552 2762 2735 207 306 0 0 chr15 47685391 47685440 -53695081 - MIR SINE MIR -2 260 212 181 214 125 0 chr15 47685441 47685497 -53695024 + MIR SINE MIR 186 248 -14 335 265 129 26 chr15 47686168 47686332 -53694189 + MIR3 SINE MIR 1 177 -73 1570 203 60 14 chr15 47686541 47686890 -53693631 + MLT1A1 LTR MaLR 1 365 0 281 350 137 0 chr15 47687415 47687532 -53692989 + L2 LINE L2 3134 3266 -6 327 305 63 63 chr15 47687713 47688044 -53692477 + L1MDa LINE L1 19 349 -6191 673 229 41 88 chr15 47688376 47688731 -53691790 + L1MDa LINE L1 794 1156 -5374 429 260 68 45 chr15 47688929 47689106 -53691415 + MIR3 SINE MIR 25 205 -3 2236 101 0 0 chr15 47690705 47691002 -53689519 + AluSx SINE Alu 1 297 -15 360 302 133 7 chr15 47691152 47691295 -53689226 + MIR SINE MIR 13 173 -35 230 300 43 0 chr15 47691268 47691338 -53689183 - MIR SINE MIR -149 113 41 * 447 323 131 17 chr15 47692043 47692455 -53688066 + L2 LINE L2 2469 2927 -387 386 202 0 175 chr15 47692645 47692828 -53687693 + L2 LINE L2 3163 3313 0 482 289 53 59 chr15 47693199 47693386 -53687135 + MIR3 SINE MIR 20 205 -3 891 138 7 0 chr15 47693398 47693536 -53686985 + FLAM_C SINE Alu 1 139 -4 826 144 0 8 chr15 47693787 47693919 -53686602 + FLAM_C SINE Alu 1 131 -2 1296 253 62 50 chr15 47693963 47694292 -53686229 + MLT1J LTR MaLR 99 435 -76 2191 85 7 26 chr15 47694292 47694598 -53685923 - AluY SINE Alu -10 301 2 1296 253 62 50 chr15 47694598 47694672 -53685849 + MLT1J LTR MaLR 435 507 -4 415 244 112 16 chr15 47694935 47695083 -53685438 - MIR3 SINE MIR -43 165 19 325 345 72 36 chr15 47695338 47695532 -53684989 - MIR SINE MIR -31 231 31 421 331 74 0 chr15 47696994 47697142 -53683379 + MIR SINE MIR 48 206 -56 260 283 163 0 chr15 47697174 47697266 -53683255 - MIR SINE MIR -34 228 122 1423 177 72 10 chr15 47697911 47698216 -53682305 - MER33 DNA MER1_type 0 324 1 22 35 0 0 chr15 47699140 47699169 -53681352 + AT_rich Low_complexity Low_complexity 1 29 0 185 260 40 0 chr15 47699925 47699975 -53680546 + MIR SINE MIR 72 123 -85 239 329 0 0 chr15 47700697 47700767 -53679754 + MIR SINE MIR 74 143 -119 501 162 71 20 chr15 47702280 47702379 -53678142 + FLAM_A SINE Alu 18 121 -21 2063 148 37 20 chr15 47702668 47702748 -53677773 - MER47A DNA MER2_type -1957 366 289 2392 81 0 0 chr15 47702748 47703055 -53677466 + AluSc SINE Alu 1 307 -2 2063 148 37 20 chr15 47703055 47703326 -53677195 - MER47A DNA MER2_type -2034 289 9 327 291 12 0 chr15 47703948 47704034 -53676487 - MER69A DNA AcHobo -85 92 6 287 322 35 43 chr15 47704102 47704217 -53676304 - MIR3 SINE MIR -87 121 8 189 178 0 0 chr15 47704627 47704672 -53675849 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 594 152 105 0 chr15 47704677 47704782 -53675739 - AluSc SINE Alu -5 304 189 240 204 0 0 chr15 47704886 47704930 -53675591 - MER20B DNA MER1_type -1 782 739 2230 229 52 62 chr15 47704973 47705720 -53674801 - MER20B DNA MER1_type -39 744 5 387 60 0 0 chr15 47705738 47705788 -53674733 + (TG)n Simple_repeat Simple_repeat 2 51 0 1617 206 104 43 chr15 47705848 47706338 -53674183 + MLT2B1 LTR ERVL 1 520 0 429 316 89 61 chr15 47706928 47707368 -53673153 - L2 LINE L2 -1 3271 2820 888 320 69 17 chr15 47707715 47708196 -53672325 - L2 LINE L2 -1019 2295 1790 401 225 45 157 chr15 47709089 47709356 -53671165 - L1MCa LINE L1 -4351 2075 1839 420 333 41 11 chr15 47709848 47710115 -53670406 - HAL1 LINE L1 -832 1675 1401 416 226 65 71 chr15 47711482 47711637 -53668884 + MIR SINE MIR 84 237 -25 993 221 106 39 chr15 47712013 47712325 -53668196 + LTR16A LTR ERVL 118 450 0 786 276 75 58 chr15 47712965 47713531 -53666990 + L2 LINE L2 2736 3313 0 22 0 0 0 chr15 47714100 47714122 -53666399 + AT_rich Low_complexity Low_complexity 1 22 0 354 297 297 0 chr15 47714558 47714750 -53665771 - MIR SINE MIR 0 262 14 1495 98 15 0 chr15 47715463 47715667 -53664854 - MER21A LTR ERV1 0 931 725 * 2595 183 64 21 chr15 47715666 47716181 -53664340 - MER21A LTR ERV1 -394 537 1 240 111 0 0 chr15 47716235 47716271 -53664250 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 359 260 20 30 chr15 47716459 47716559 -53663962 + L2 LINE L2 3173 3271 -1 180 320 120 24 chr15 47716545 47716670 -53663851 - L3 LINE CR1 -184 1393 1257 * 188 338 27 0 chr15 47716784 47716858 -53663663 - L3 LINE CR1 -405 1172 1097 2511 138 41 5 chr15 47717030 47717443 -53663078 - MSTA LTR MaLR 0 428 1 288 290 86 0 chr15 47718046 47718139 -53662382 - MIR3 SINE MIR -106 102 2 279 235 109 34 chr15 47719368 47719487 -53661034 + MIR3 SINE MIR 75 202 -6 256 311 41 87 chr15 47720970 47721166 -53659355 - MER5A DNA MER1_type -1 188 2 528 259 168 0 chr15 47721187 47721330 -53659191 - MER5A DNA MER1_type -14 175 9 532 244 50 0 chr15 47721336 47721455 -53659066 - MER5B DNA MER1_type -17 161 37 330 283 115 68 chr15 47722684 47723971 -53656550 + L1P LINE L1 3890 5237 -909 2107 117 3 0 chr15 47723974 47724281 -53656240 + AluSx SINE Alu 1 308 -4 253 217 103 98 chr15 47724311 47724514 -53656007 + L1MC4a LINE L1 5255 5458 -2350 1503 77 10 0 chr15 47724529 47724723 -53655798 - MER30 DNA MER1_type -33 197 2 1505 232 107 17 chr15 47724724 47725228 -53655293 + L1MC4a LINE L1 5451 6004 -287 255 214 43 29 chr15 47725218 47725288 -53655233 + L1MC4a LINE L1 6084 6154 -1654 * 201 94 0 0 chr15 47725475 47725507 -53655014 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 1493 182 26 29 chr15 47725511 47725824 -53654697 - AluJo SINE Alu 0 312 1 336 179 13 26 chr15 47725831 47725909 -53654612 - Charlie8 DNA MER1_type -2270 147 71 503 328 43 8 chr15 47726193 47726449 -53654072 + MARNA DNA Mariner 313 577 -9 1710 201 15 18 chr15 47726556 47726894 -53653627 + MER58B DNA MER1_type 3 339 -2 2178 90 0 13 chr15 47726933 47727233 -53653288 - AluY SINE Alu -15 296 1 793 138 0 0 chr15 47728381 47728497 -53652024 - FLAM_C SINE Alu -13 120 5 788 270 75 8 chr15 47728955 47729196 -53651325 + MIR SINE MIR 3 259 -3 1820 151 12 112 chr15 47729219 47729622 -53650899 - MLT1A1 LTR MaLR -2 363 1 2992 199 19 72 chr15 47729896 47730623 -53649898 + LTR8 LTR ERV1 1 689 -2 180 0 0 0 chr15 47730905 47730925 -53649596 + (A)n Simple_repeat Simple_repeat 1 20 0 189 0 0 0 chr15 47730985 47731006 -53649515 + (CCA)n Simple_repeat Simple_repeat 3 23 0 360 375 63 30 chr15 47731754 47732229 -53648292 - L2 LINE L2 -337 2977 2487 3020 128 21 6 chr15 47732234 47732701 -53647820 - MER41B LTR ERV1 0 635 162 2260 105 0 3 chr15 47732702 47733015 -53647506 - AluSx SINE Alu 0 312 1 657 98 0 107 chr15 47733602 47733624 -53646897 - MER41B LTR ERV1 -526 109 86 2103 104 0 3 chr15 47733624 47733922 -53646599 + AluSc SINE Alu 1 297 -12 657 98 0 107 chr15 47733922 47734021 -53646500 - MER41B LTR ERV1 -549 86 1 716 313 41 16 chr15 47734297 47734543 -53645978 + MIR SINE MIR 11 262 0 670 181 0 112 chr15 47734831 47735019 -53645502 + LTR12 LTR ERV1 286 452 -262 11640 223 23 31 chr15 47735064 47737393 -53643128 + LTR8-int LTR ERV1 1 2926 -5700 2334 78 0 10 chr15 47737393 47737701 -53642820 + AluY SINE Alu 1 305 -6 11640 223 23 31 chr15 47737701 47738507 -53642014 + LTR8-int LTR ERV1 2926 3737 -4889 784 239 5 25 chr15 47739274 47739471 -53641050 - L2 LINE L2 0 3313 3121 1036 156 0 11 chr15 47739471 47739650 -53640871 + AluSg/x SINE Alu 125 301 -9 1752 214 72 123 chr15 47739652 47739901 -53640620 - L2 LINE L2 -211 3102 2842 2123 122 0 0 chr15 47739901 47740212 -53640309 + AluSx SINE Alu 1 311 -1 1752 214 72 123 chr15 47740212 47740902 -53639619 - L2 LINE L2 -471 2842 2227 277 317 140 49 chr15 47741202 47741445 -53639076 - L2 LINE L2 -8 3264 3000 1167 262 88 25 chr15 47741513 47742067 -53638454 - L1MEc LINE L1 -4736 1660 1072 939 178 0 0 chr15 47742085 47742242 -53638279 - FRAM SINE Alu -19 157 1 1035 211 23 20 chr15 47742245 47742548 -53637973 - L1MEc LINE L1 -5325 1071 768 334 306 46 53 chr15 47742890 47743095 -53637426 - L1M LINE L1 -701 5420 5219 632 276 76 60 chr15 47743097 47743216 -53637305 - MIR SINE MIR 0 262 146 207 100 0 0 chr15 47743216 47743246 -53637275 + (TTA)n Simple_repeat Simple_repeat 2 31 0 632 276 76 60 chr15 47743246 47743376 -53637145 - MIR SINE MIR -116 146 9 317 333 15 56 chr15 47743391 47743586 -53636935 - L1M4 LINE L1 -941 5205 5019 1266 158 134 4 chr15 47744335 47744589 -53635932 + AluJb SINE Alu 7 293 -19 189 305 102 55 chr15 47744688 47744816 -53635705 - MIR SINE MIR -56 206 73 212 250 11 114 chr15 47745864 47745952 -53634569 - L2 LINE L2 -15 3298 3220 1670 170 70 28 chr15 47746291 47746691 -53633830 - MER95 LTR ERV -10 421 5 1696 186 0 0 chr15 47747540 47747835 -53632686 + AluJb SINE Alu 9 303 -9 239 282 39 39 chr15 47747851 47747929 -53632592 + MIR SINE MIR 57 134 -74 225 200 18 73 chr15 47747998 47748053 -53632468 - MIR3 SINE MIR -40 168 117 2045 136 0 10 chr15 47748409 47748719 -53631802 + AluSx SINE Alu 2 308 -4 2458 138 53 15 chr15 47749323 47749389 -53631132 - MSTC LTR MaLR 0 428 366 1999 126 0 7 chr15 47749389 47749683 -53630838 - AluSx SINE Alu -20 292 1 2458 138 53 15 chr15 47749683 47750028 -53630493 - MSTC LTR MaLR -62 366 1 1151 192 57 7 chr15 47750488 47750819 -53629702 - MSTD LTR MaLR -3 393 1 996 214 0 6 chr15 47750917 47751095 -53629426 + MER8 DNA MER2_type 1 177 -62 248 246 105 0 chr15 47751072 47751129 -53629392 + MER2 DNA MER2_type 282 344 -1 * 427 181 14 0 chr15 47751129 47751200 -53629321 - Tigger2 DNA MER2_type -2646 72 1 197 223 27 107 chr15 47751323 47751435 -53629086 - L2 LINE L2 -372 2942 2840 198 200 50 0 chr15 47751492 47751532 -53628989 + MIR3 SINE MIR 152 193 -15 512 300 9 23 chr15 47752146 47752311 -53628210 + MIR SINE MIR 10 143 -65 1584 195 33 3 chr15 47752425 47752727 -53627794 - AluJb SINE Alu -1 311 1 217 366 0 0 chr15 47753482 47753553 -53626968 - MIR SINE MIR -121 141 71 6487 123 62 50 chr15 47753794 47755010 -53625511 - Tigger3b DNA MER2_type 0 1231 1 1072 170 174 30 chr15 47757478 47757713 -53622808 - MER45C DNA AcHobo -8 945 677 805 240 103 10 chr15 47757832 47758036 -53622485 - MER45C DNA AcHobo -730 223 1 400 276 35 41 chr15 47758616 47758761 -53621760 + MER5A DNA MER1_type 19 162 -27 1971 70 0 33 chr15 47760182 47760453 -53620068 + AluY SINE Alu 49 310 -1 21 0 0 0 chr15 47761429 47761450 -53619071 + AT_rich Low_complexity Low_complexity 1 21 0 1095 272 105 29 chr15 47763115 47763726 -53616795 - L2 LINE L2 -18 3295 2640 550 319 119 45 chr15 47764202 47764916 -53615605 - L2 LINE L2 -519 2795 2029 189 236 283 19 chr15 47764919 47765025 -53615496 - L2 LINE L2 -3 3310 3177 223 296 22 82 chr15 47765322 47765457 -53615064 - L2 LINE L2 -235 3037 2911 312 274 60 34 chr15 47765534 47765651 -53614870 - MIR SINE MIR -21 241 122 225 226 38 0 chr15 47765649 47765702 -53614819 + L2 LINE L2 2889 2943 -371 * 210 321 110 0 chr15 47765754 47765863 -53614658 + L2 LINE L2 2946 3066 -247 365 222 111 40 chr15 47766211 47766337 -53614184 + L2 LINE L2 3138 3272 0 366 258 11 11 chr15 47766338 47766427 -53614094 - MIR SINE MIR -160 102 14 323 316 29 43 chr15 47766759 47766898 -53613623 + MIR3 SINE MIR 51 187 -21 201 231 144 48 chr15 47766901 47767005 -53613516 + L2 LINE L2 3186 3299 -14 260 65 43 0 chr15 47767005 47767051 -53613470 + (TGAA)n Simple_repeat Simple_repeat 4 51 0 1175 206 62 8 chr15 47767729 47767972 -53612549 + MIR SINE MIR 7 262 0 191 349 0 35 chr15 47768022 47768108 -53612413 - L2 LINE L2 -994 2320 2238 3311 104 123 8 chr15 47769889 47770361 -53610160 + MER1A DNA MER1_type 2 527 0 2060 201 37 9 chr15 47770511 47770943 -53609578 - L1M4 LINE L1 -1875 4271 3828 1148 307 56 18 chr15 47770964 47771466 -53609055 - L1MEc LINE L1 -5676 720 200 255 233 23 75 chr15 47771728 47771861 -53608660 + MIR SINE MIR 80 205 -57 2165 103 0 0 chr15 47772029 47772340 -53608181 + AluSx SINE Alu 1 311 0 839 162 13 7 chr15 47773118 47773272 -53607249 - LTR32 LTR ERVL 0 471 317 1541 194 59 19 chr15 47773328 47773401 -53607120 - LTR32 LTR ERVL -120 351 282 2634 129 58 31 chr15 47773401 47773818 -53606703 - MSTA LTR MaLR 0 428 1 1541 194 59 19 chr15 47773818 47774068 -53606453 - LTR32 LTR ERVL -189 282 15 235 173 96 19 chr15 47774444 47774496 -53606025 - L2 LINE L2 0 3313 3258 539 218 17 17 chr15 47774987 47775166 -53605355 + CT-rich Low_complexity Low_complexity 2 180 0 663 272 77 5 chr15 47775723 47775918 -53604603 - MIR SINE MIR -35 227 19 252 242 0 32 chr15 47776931 47776993 -53603528 - MIR3 SINE MIR -25 183 124 203 207 256 0 chr15 47779515 47779597 -53600924 + L2 LINE L2 3170 3272 0 413 275 84 24 chr15 47780104 47780271 -53600250 + MIR3 SINE MIR 21 197 -11 353 291 135 14 chr15 47781473 47781621 -53598900 + MIR3 SINE MIR 32 197 -11 419 265 43 8 chr15 47781800 47781917 -53598604 + MER5A DNA MER1_type 9 129 -60 262 289 141 15 chr15 47782592 47782727 -53597794 + MIR3 SINE MIR 12 163 -45 189 0 0 0 chr15 47783076 47783097 -53597424 + (T)n Simple_repeat Simple_repeat 1 21 0 769 131 54 31 chr15 47783113 47783243 -53597278 - FLAM_C SINE Alu 0 133 1 937 233 5 20 chr15 47783487 47783689 -53596832 + MER58A DNA MER1_type 26 224 0 602 222 77 0 chr15 47784225 47784342 -53596179 + FLAM_A SINE Alu 2 127 -6 183 80 0 0 chr15 47784847 47784872 -53595649 + (T)n Simple_repeat Simple_repeat 1 25 0 249 247 52 72 chr15 47786041 47786138 -53594383 + MIR SINE MIR 82 176 -86 3920 50 15 0 chr15 47786237 47786698 -53593823 - L1PA5 LINE L1 0 6154 5687 1431 150 4 11 chr15 47787677 47787944 -53592577 - L1PA5 LINE L1 -174 5980 5716 242 305 79 43 chr15 47788487 47788651 -53591870 - MIR3 SINE MIR -1 207 38 1442 251 78 0 chr15 47789118 47789505 -53591016 + LTR16A LTR ERVL 29 445 -5 725 153 90 23 chr15 47789510 47789687 -53590834 - MER53 DNA DNA 0 189 1 1763 270 33 36 chr15 47789689 47790264 -53590257 + HERV16 LTR ERVL 7 579 -4417 1397 179 48 96 chr15 47790347 47790700 -53589821 - MER58B DNA MER1_type -5 336 1 814 273 84 4 chr15 47790888 47791115 -53589406 - MIR SINE MIR -15 247 3 701 227 34 34 chr15 47791373 47791580 -53588941 - L1MEc LINE L1 -3922 2474 2268 641 292 99 5 chr15 47791580 47791782 -53588739 + MER58A DNA MER1_type 1 221 -3 592 182 76 72 chr15 47791825 47792061 -53588460 - L1MEc LINE L1 -4121 2275 2039 12128 152 38 7 chr15 47792089 47794064 -53586457 + L1M1 LINE L1 10 2044 -5521 2675 95 11 48 chr15 47794064 47794442 -53586079 - THE1B LTR MaLR 0 364 1 3021 75 40 0 chr15 47794442 47794842 -53585679 - THE1B-int LTR MaLR 0 1580 1165 1652 146 5 75 chr15 47794842 47795211 -53585310 - MER4A LTR ERV1 0 664 263 511 135 31 10 chr15 47795211 47795307 -53585214 - MER4A LTR ERV1 -566 98 1 4118 106 70 21 chr15 47795309 47795979 -53584542 - MER4A-int LTR ERV1 0 6598 5896 270 21 64 0 chr15 47796007 47796054 -53584467 + (TTG)n Simple_repeat Simple_repeat 2 51 0 44064 29 21 1 chr15 47796058 47802088 -53578433 - L1HS LINE L1 -3 6152 2 11461 124 90 62 chr15 47802088 47805558 -53574963 - MER4A-int LTR ERV1 -615 5912 1203 2387 77 3 10 chr15 47805558 47805871 -53574650 - AluY SINE Alu 0 311 1 11461 124 90 62 chr15 47805871 47806394 -53574127 - MER4A-int LTR ERV1 -5324 1203 696 387 0 0 0 chr15 47806394 47806437 -53574084 + (CA)n Simple_repeat Simple_repeat 2 44 0 1295 107 42 32 chr15 47806438 47806654 -53573867 - MER4A-int LTR ERV1 -5486 1112 895 * 2658 73 71 73 chr15 47806653 47807090 -53573431 - MER4A-int LTR ERV1 -6162 436 1 1983 113 158 75 chr15 47807093 47807466 -53573055 - MER4A LTR ERV1 0 664 261 379 129 0 141 chr15 47807472 47807523 -53572998 - THE1B-int LTR MaLR -1492 88 52 2411 78 0 13 chr15 47807523 47807831 -53572690 - AluY SINE Alu -7 304 1 379 129 0 141 chr15 47807831 47807864 -53572657 - THE1B-int LTR MaLR -1528 52 16 569 153 10 10 chr15 47807867 47807965 -53572556 + MER4A LTR ERV1 1 98 -566 1529 129 19 101 chr15 47807965 47808337 -53572184 + MER4A LTR ERV1 263 662 -2 2508 142 6 3 chr15 47808359 47808718 -53571803 - THE1B LTR MaLR -4 360 1 8541 134 76 23 chr15 47808718 47809004 -53571517 + L1M1 LINE L1 2040 2309 -5256 1837 170 13 0 chr15 47809004 47809304 -53571217 - AluSx SINE Alu -8 304 1 8541 134 76 23 chr15 47809304 47810698 -53569823 + L1M1 LINE L1 2309 3628 -3937 1509 164 160 11 chr15 47810698 47810961 -53569560 + AluJb SINE Alu 1 302 0 8541 134 76 23 chr15 47810961 47811007 -53569514 + L1M1 LINE L1 3628 3670 -3895 2204 117 0 0 chr15 47811007 47811298 -53569223 + AluSx SINE Alu 1 291 -21 8541 134 76 23 chr15 47811298 47811557 -53568964 + L1M1 LINE L1 3670 4132 -3433 3433 209 90 37 chr15 47811555 47812857 -53567664 - L1 LINE L1 -3136 4429 3065 * 16075 146 31 8 chr15 47812865 47815096 -53565425 - L1MA1 LINE L1 -6 7715 5538 201 39 0 0 chr15 47815096 47815122 -53565399 + (TG)n Simple_repeat Simple_repeat 1 26 0 16075 146 31 8 chr15 47815122 47815816 -53564705 - L1MA1 LINE L1 -2183 5538 4862 2169 98 6 46 chr15 47815816 47815852 -53564669 - AluSq SINE Alu 0 313 277 216 0 0 0 chr15 47815852 47815876 -53564645 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2169 98 6 46 chr15 47815876 47816165 -53564356 - AluSq SINE Alu -36 277 1 16075 146 31 8 chr15 47816165 47816367 -53564154 - L1MA1 LINE L1 -2859 4862 4666 2198 133 0 0 chr15 47816367 47816669 -53563852 + AluSx SINE Alu 1 302 -10 16075 146 31 8 chr15 47816669 47820798 -53559723 - L1MA1 LINE L1 -3055 4666 270 1182 208 59 0 chr15 47820802 47821057 -53559464 - L1MA7 LINE L1 -401 5890 5621 4439 219 70 107 chr15 47821059 47823158 -53557363 - L1 LINE L1 -5007 2482 460 2490 247 119 22 chr15 47823190 47823289 -53557232 - L1MEc LINE L1 -4370 2026 1938 1467 123 5 5 chr15 47823289 47823493 -53557028 - AluSq SINE Alu -109 204 1 2490 247 119 22 chr15 47823493 47824384 -53556137 - L1MEc LINE L1 -4458 1938 940 2514 243 89 29 chr15 47824385 47824743 -53555778 - L1MEc LINE L1 -5480 916 581 1546 158 73 43 chr15 47824743 47824874 -53555647 - MER44D DNA MER2_type -1882 609 483 2210 115 0 0 chr15 47824874 47825161 -53555360 + AluSx SINE Alu 1 287 -25 1546 158 73 43 chr15 47825161 47825358 -53555163 - MER44D DNA MER2_type -2008 483 1 2514 243 89 29 chr15 47825358 47825487 -53555034 - L1MEc LINE L1 -5815 581 461 2564 110 6 3 chr15 47825487 47825850 -53554671 + THE1B LTR MaLR 1 364 0 2514 243 89 29 chr15 47825850 47826196 -53554325 - L1MEc LINE L1 -5935 461 32 299 278 44 0 chr15 47826451 47826541 -53553980 + L2 LINE L2 3179 3272 0 492 156 26 0 chr15 47828367 47828444 -53552077 + Tigger5 DNA MER2_type 1 79 -2244 358 203 40 0 chr15 47828445 47828519 -53552002 - Tigger5 DNA MER2_type -5 2318 2242 * 449 154 0 39 chr15 47828517 47828595 -53551926 + Tigger5 DNA MER2_type 2249 2323 0 715 201 0 8 chr15 47829987 47830121 -53550400 + FLAM_C SINE Alu 1 133 0 5669 119 67 5 chr15 47830950 47832082 -53548439 + L1PB2 LINE L1 4954 6148 -3 180 310 69 35 chr15 47832876 47832963 -53547558 + L3b LINE CR1 1456 1545 -38 2332 89 0 0 chr15 47833342 47833635 -53546886 - AluSg SINE Alu -16 294 2 1408 204 37 20 chr15 47834238 47834532 -53545989 - AluJo SINE Alu -13 299 1 23 33 0 0 chr15 47835212 47835242 -53545279 + AT_rich Low_complexity Low_complexity 1 30 0 371 180 22 79 chr15 47835609 47835698 -53544823 + MIR SINE MIR 100 183 -79 1984 139 0 0 chr15 47835737 47836024 -53544497 + AluJb SINE Alu 7 293 -19 225 0 0 0 chr15 47837736 47837761 -53542760 + (CAG)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr15 47838871 47838900 -53541621 + AT_rich Low_complexity Low_complexity 1 29 0 1082 179 72 0 chr15 47839693 47839888 -53540633 - MER3 DNA MER1_type 0 209 1 1638 156 47 14 chr15 47840406 47840681 -53539840 - AluJb SINE Alu -28 284 1 2381 84 0 3 chr15 47841182 47841478 -53539043 - AluSp SINE Alu -18 295 1 1692 148 25 14 chr15 47842963 47843241 -53537280 + AluJb SINE Alu 2 282 -30 185 0 40 0 chr15 47843247 47843272 -53537249 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 349 293 45 19 chr15 47843350 47843507 -53537014 - L1ME LINE L1 -437 5684 5524 23 0 0 0 chr15 47843738 47843761 -53536760 + AT_rich Low_complexity Low_complexity 1 23 0 1839 172 7 3 chr15 47843955 47844252 -53536269 + AluJb SINE Alu 1 298 -14 21 57 0 0 chr15 47844362 47844397 -53536124 + AT_rich Low_complexity Low_complexity 1 35 0 60 64 0 0 chr15 47845166 47845275 -53535246 + AT_rich Low_complexity Low_complexity 1 109 0 23 0 0 0 chr15 47845719 47845742 -53534779 + AT_rich Low_complexity Low_complexity 1 23 0 201 289 0 0 chr15 47845997 47846042 -53534479 + polypurine Low_complexity Low_complexity 3 47 0 410 296 87 15 chr15 47846401 47846568 -53533953 + L1MC4 LINE L1 5455 5639 -482 2537 60 0 0 chr15 47846568 47846867 -53533654 - AluY SINE Alu -12 299 1 410 296 87 15 chr15 47846867 47846895 -53533626 + L1MC4 LINE L1 5639 5664 -457 2824 220 99 59 chr15 47846999 47847801 -53532720 + L1MC5 LINE L1 6650 7519 -442 198 0 0 0 chr15 47847801 47847823 -53532698 + (GA)n Simple_repeat Simple_repeat 2 23 0 2824 220 99 59 chr15 47847823 47848237 -53532284 + L1MC5 LINE L1 7519 7915 -46 247 254 153 0 chr15 47848360 47848478 -53532043 + L1ME4a LINE L1 5965 6100 -21 1144 178 5 0 chr15 47848788 47848973 -53531548 - MER5A DNA MER1_type -3 186 1 1387 210 31 14 chr15 47848987 47849273 -53531248 - AluJo SINE Alu -21 291 1 994 276 117 30 chr15 47851063 47851200 -53529321 + L2 LINE L2 2463 2587 -726 2407 153 19 0 chr15 47851200 47851618 -53528903 - L1MB5 LINE L1 0 6174 5749 994 276 117 30 chr15 47851618 47852114 -53528407 + L2 LINE L2 2587 3150 -163 3575 166 112 59 chr15 47853550 47854052 -53526469 + L1MC4 LINE L1 6985 7459 -583 2335 104 0 7 chr15 47854052 47854360 -53526161 + AluSx SINE Alu 1 306 -6 3575 166 112 59 chr15 47854360 47854859 -53525662 + L1MC4 LINE L1 7459 8039 -3 23 0 0 0 chr15 47856053 47856076 -53524445 + AT_rich Low_complexity Low_complexity 1 23 0 209 189 0 0 chr15 47857812 47857849 -53522672 - L3 LINE CR1 -3 1574 1538 351 306 0 0 chr15 47859087 47859172 -53521349 - L2 LINE L2 -2 3270 3186 1081 268 134 38 chr15 47860673 47861646 -53518875 + L1MC4 LINE L1 5844 7020 -873 * 7070 194 33 39 chr15 47861636 47864173 -53516348 + L1M2c LINE L1 2 2270 -4519 268 292 130 21 chr15 47864342 47864534 -53515987 - L1MC4a LINE L1 -1907 5901 5689 22 56 0 0 chr15 47866042 47866078 -53514443 + AT_rich Low_complexity Low_complexity 1 36 0 2249 123 0 0 chr15 47866299 47866600 -53513921 - AluSx SINE Alu -11 301 1 21 0 0 0 chr15 47867021 47867042 -53513479 + AT_rich Low_complexity Low_complexity 1 21 0 660 264 90 0 chr15 47867699 47867900 -53512621 - MIR SINE MIR 0 262 44 2116 132 7 0 chr15 47868217 47868527 -53511994 + AluSx SINE Alu 1 312 0 239 320 66 8 chr15 47869090 47869212 -53511309 + MER5B DNA MER1_type 21 149 -29 323 314 90 13 chr15 47869401 47869557 -53510964 + MIR SINE MIR 66 233 -29 2204 119 0 0 chr15 47870003 47870298 -53510223 + AluSq SINE Alu 3 297 -16 196 276 46 35 chr15 47870919 47871006 -53509515 - MIR SINE MIR -150 112 25 27 29 0 0 chr15 47871956 47871990 -53508531 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr15 47872117 47872140 -53508381 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr15 47872742 47872772 -53507749 + AT_rich Low_complexity Low_complexity 1 30 0 719 247 68 44 chr15 47872815 47873111 -53507410 + L1ME4a LINE L1 5539 5841 -280 308 304 20 20 chr15 47873255 47873357 -53507164 + MIR SINE MIR 46 147 -61 257 56 481 0 chr15 47874793 47874847 -53505674 - MADE1 DNA Mariner 0 80 1 684 202 0 8 chr15 47874859 47874983 -53505538 - FLAM_C SINE Alu -16 127 5 1038 268 100 6 chr15 47874992 47875321 -53505200 - L2 LINE L2 -1 3312 2953 1161 244 133 37 chr15 47875334 47875716 -53504805 - L2 LINE L2 -499 2815 2397 257 181 193 12 chr15 47875696 47875779 -53504742 + MIR SINE MIR 70 167 -95 * 443 335 80 24 chr15 47876176 47876388 -53504133 + MIR SINE MIR 13 236 -26 189 196 0 107 chr15 47876369 47876425 -53504096 + L2 LINE L2 3222 3271 -1 * 1629 189 0 24 chr15 47876803 47877100 -53503421 + AluJo SINE Alu 11 300 -12 237 325 99 8 chr15 47879711 47879829 -53500692 + MIR SINE MIR 21 147 -87 2500 61 3 0 chr15 47880482 47880779 -53499742 + AluY SINE Alu 1 298 -13 2419 73 0 10 chr15 47880791 47881094 -53499427 + AluY SINE Alu 1 300 -11 309 68 0 0 chr15 47881141 47881185 -53499336 + (TG)n Simple_repeat Simple_repeat 1 44 0 1907 132 0 14 chr15 47881185 47881465 -53499056 - AluSx SINE Alu -36 276 1 23 0 0 0 chr15 47881877 47881900 -53498621 + AT_rich Low_complexity Low_complexity 1 23 0 3992 134 30 4 chr15 47882022 47882699 -53497822 + L1MA4A LINE L1 5602 6295 -8 312 364 109 0 chr15 47882878 47883043 -53497478 - MER5A DNA MER1_type 0 189 7 315 318 37 19 chr15 47883053 47883160 -53497361 - MIR SINE MIR -58 150 42 230 220 132 22 chr15 47883337 47883428 -53497093 + L2 LINE L2 3145 3245 -68 367 276 60 30 chr15 47883571 47883705 -53496816 + MIR3 SINE MIR 30 167 -41 278 295 117 20 chr15 47883761 47883890 -53496631 + MIR SINE MIR 15 151 -104 185 217 43 0 chr15 47883907 47883953 -53496568 + L2 LINE L2 3210 3257 -15 1457 198 42 4 chr15 47884938 47885201 -53495320 - AluJo SINE Alu -35 277 5 2640 43 0 0 chr15 47885293 47885595 -53494926 - AluY SINE Alu -9 302 1 369 314 18 14 chr15 47886241 47886461 -53494060 + L1MC4 LINE L1 6885 7105 -937 317 250 21 42 chr15 47886549 47886645 -53493876 + L1MC5 LINE L1 6979 7072 -889 448 248 31 108 chr15 47886850 47886932 -53493589 + L1MC5 LINE L1 6656 6743 -1218 1818 83 0 0 chr15 47886932 47887174 -53493347 + L1PA7 LINE L1 5905 6146 -8 448 248 31 108 chr15 47887174 47887414 -53493107 + L1MC5 LINE L1 6743 6953 -1008 236 194 177 0 chr15 47887397 47887459 -53493062 + L1ME3A LINE L1 6093 6165 -5 * 578 250 22 49 chr15 47887554 47887778 -53492743 + L1MC5 LINE L1 7004 7221 -740 355 265 95 74 chr15 47887928 47888056 -53492465 + L1MC5 LINE L1 7311 7435 -526 15723 88 5 1 chr15 47888056 47891039 -53489482 + L1PA7 LINE L1 3144 6147 -7 355 265 95 74 chr15 47891039 47891371 -53489150 + L1MC5 LINE L1 7435 7788 -173 1876 135 10 20 chr15 47891371 47891675 -53488846 + AluSq SINE Alu 1 301 -12 355 265 95 74 chr15 47891675 47891805 -53488716 + L1MC5 LINE L1 7788 7914 -47 1490 148 19 12 chr15 47895489 47895746 -53484775 - L1PB3 LINE L1 -3 6151 5893 450 345 32 53 chr15 47896675 47897035 -53483486 + ERVL LTR ERVL 772 1123 -4531 2128 113 7 3 chr15 47897035 47897336 -53483185 + AluSx SINE Alu 1 302 -10 450 345 32 53 chr15 47897336 47897410 -53483111 + ERVL LTR ERVL 1123 1197 -4457 254 200 291 18 chr15 47897442 47897583 -53482938 + MER5A DNA MER1_type 4 189 0 525 131 12 0 chr15 47897591 47897675 -53482846 - MER5B DNA MER1_type 0 178 94 249 81 0 0 chr15 47897676 47897713 -53482808 + MER5B DNA MER1_type 141 177 -1 325 305 6 67 chr15 47897718 47897882 -53482639 + ERVL LTR ERVL 4396 4549 -1215 788 212 48 0 chr15 47897890 47898079 -53482442 - MER96B DNA MER1_type? -7 410 213 1430 158 5 9 chr15 47898181 47898402 -53482119 - AluJo SINE Alu -92 220 1 2286 118 0 0 chr15 47898621 47898927 -53481594 - AluSq SINE Alu -7 306 1 1834 28 0 0 chr15 47898959 47899170 -53481351 - AluYb8 SINE Alu 0 318 108 235 329 40 0 chr15 47899345 47899421 -53481100 - L2 LINE L2 -600 2714 2636 370 399 45 11 chr15 47899439 47899705 -53480816 + L2 LINE L2 2807 3081 -191 2089 122 0 0 chr15 47899983 47900297 -53480224 + AluSx SINE Alu 6 319 0 22 0 0 0 chr15 47900475 47900497 -53480024 + AT_rich Low_complexity Low_complexity 1 22 0 984 291 8 0 chr15 47900574 47900815 -53479706 + MIR SINE MIR 10 252 -10 639 39 0 0 chr15 47900818 47900896 -53479625 + (TAG)n Simple_repeat Simple_repeat 1 78 0 186 303 204 0 chr15 47901099 47901231 -53479290 + L2 LINE L2 3118 3276 -37 2051 126 7 3 chr15 47901767 47902076 -53478445 + AluSx SINE Alu 1 310 -2 1022 224 141 9 chr15 47902867 47903193 -53477328 + MLT1C LTR MaLR 6 374 -93 1711 216 61 13 chr15 47903193 47903655 -53476866 + L1M4 LINE L1 2445 2928 -3218 20356 153 34 36 chr15 47903735 47904772 -53475749 + L1MA2 LINE L1 13 1051 -6672 307 130 0 0 chr15 47904772 47904818 -53475703 + U6 snRNA snRNA 1 46 -61 20356 153 34 36 chr15 47904818 47906849 -53473672 + L1MA2 LINE L1 1051 3085 -4638 1932 123 27 3 chr15 47906849 47907142 -53473379 + AluSx SINE Alu 1 300 -12 20356 153 34 36 chr15 47907142 47909872 -53470649 + L1MA2 LINE L1 3085 5834 -1889 2047 115 13 13 chr15 47909872 47910176 -53470345 + AluY SINE Alu 1 304 -7 20356 153 34 36 chr15 47910176 47911968 -53468553 + L1MA2 LINE L1 5834 7629 -94 1614 95 32 0 chr15 47912107 47912359 -53468162 + L1MA2 LINE L1 6041 6300 -4 1387 247 22 43 chr15 47912374 47912835 -53467686 + L1M4 LINE L1 4015 4465 -1681 754 132 16 25 chr15 47912881 47913002 -53467519 - FLAM_C SINE Alu -23 120 1 436 182 159 0 chr15 47913015 47913147 -53467374 + L1ME LINE L1 2000 2152 -4244 257 299 52 24 chr15 47913374 47913586 -53466935 + L3 LINE CR1 417 707 -870 822 281 163 17 chr15 47914047 47914452 -53466069 + L3 LINE CR1 1113 1576 -1 201 248 209 57 chr15 47914804 47914909 -53465612 + L2 LINE L2 3182 3302 -11 223 300 0 0 chr15 47917852 47917912 -53462609 + L2 LINE L2 3209 3268 -4 316 273 50 50 chr15 48018996 48019117 -53361404 + MIR SINE MIR 84 204 -58 340 252 223 0 chr15 48019798 48019937 -53360584 - MIR SINE MIR -10 252 83 31 0 0 0 chr15 48020397 48020428 -53360093 + GC_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr15 48020759 48020787 -53359734 + GC_rich Low_complexity Low_complexity 1 28 0 311 305 102 70 chr15 48021981 48022168 -53358353 + L1MC4 LINE L1 7437 7629 -413 453 240 16 156 chr15 48022196 48022567 -53357954 + L1MC4 LINE L1 7722 8040 -2 1444 148 33 60 chr15 48023119 48023450 -53357071 - MER33 DNA MER1_type -1 323 2 25 0 0 0 chr15 48025666 48025691 -53354830 + AT_rich Low_complexity Low_complexity 1 25 0 2006 203 57 0 chr15 48026049 48026454 -53354067 + MSTA LTR MaLR 1 428 0 25 0 0 0 chr15 48026962 48026987 -53353534 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chr15 48027252 48027291 -53353230 + AT_rich Low_complexity Low_complexity 1 39 0 734 256 49 49 chr15 48028819 48029065 -53351456 - MIR SINE MIR -7 255 10 683 164 121 0 chr15 48029768 48029908 -53350613 - MER58C DNA MER1_type 0 215 59 570 175 191 26 chr15 48030647 48030836 -53349685 + L1ME LINE L1 2864 3083 -3132 6647 82 7 6 chr15 48030882 48031869 -53348652 - L1PB1 LINE L1 -3 6148 5161 1630 199 3 0 chr15 48031869 48032186 -53348335 + L1MEc LINE L1 3736 4053 -2162 857 193 28 5 chr15 48032280 48032493 -53348028 - L1MA7 LINE L1 0 6291 6074 570 312 91 85 chr15 48033607 48034323 -53346198 - L2 LINE L2 0 3272 2550 822 306 119 32 chr15 48034467 48035219 -53345302 + L2 LINE L2 1968 3312 -1 2041 146 12 107 chr15 48035425 48035904 -53344617 + Tigger2a DNA MER2_type 1 434 0 1006 269 56 69 chr15 48036576 48036791 -53343730 - L2 LINE L2 -414 2900 2684 2073 128 0 0 chr15 48036791 48037080 -53343441 + AluSx SINE Alu 1 289 -23 1006 269 56 69 chr15 48037080 48037313 -53343208 - L2 LINE L2 -630 2684 2458 237 259 84 45 chr15 48037313 48037463 -53343058 - L2 LINE L2 -1055 2259 2059 230 162 0 0 chr15 48037470 48037507 -53343014 + L1MC1 LINE L1 6005 6041 -292 * 3688 272 84 21 chr15 48037502 48037977 -53342544 + L1ME LINE L1 3279 3723 -2492 2676 39 0 0 chr15 48037977 48038288 -53342233 + AluY SINE Alu 1 311 0 3688 272 84 21 chr15 48038288 48038406 -53342115 + L1ME LINE L1 3723 3832 -2383 1992 147 3 0 chr15 48038406 48038706 -53341815 + AluSx SINE Alu 1 301 -11 3688 272 84 21 chr15 48038706 48039828 -53340693 + L1ME LINE L1 3832 5103 -1112 259 260 110 0 chr15 48039931 48040004 -53340517 + LTR16C LTR ERVL 33 113 -378 504 193 0 44 chr15 48040174 48040288 -53340233 + LTR16C LTR ERVL 382 490 -1 691 216 27 6 chr15 48040298 48040517 -53340004 + Charlie4 DNA MER1_type 45 302 -1659 806 197 44 15 chr15 48040759 48040962 -53339559 + Charlie4 DNA MER1_type 1744 1952 -9 1201 254 53 25 chr15 48041043 48041348 -53339173 + L1ME LINE L1 5193 5488 -751 1853 154 3 19 chr15 48041348 48041659 -53338862 + AluJo SINE Alu 1 306 -6 1201 254 53 25 chr15 48041659 48041932 -53338589 + L1ME LINE L1 5488 5790 -449 560 247 114 14 chr15 48042137 48042356 -53338165 + L1MC5 LINE L1 7679 7919 -42 1060 172 52 60 chr15 48042380 48042612 -53337909 + AluJb SINE Alu 81 310 -2 21 0 0 0 chr15 48042690 48042711 -53337810 + AT_rich Low_complexity Low_complexity 1 21 0 23 86 0 0 chr15 48042844 48042902 -53337619 + AT_rich Low_complexity Low_complexity 1 58 0 545 259 150 11 chr15 48042908 48043194 -53337327 + HAL1 LINE L1 1031 1356 -1151 1577 221 6 0 chr15 48043195 48043521 -53337000 - L1M2b LINE L1 -5296 1913 1586 1418 152 38 9 chr15 48043514 48044165 -53336356 + L1MA4 LINE L1 5560 6295 -5 * 1192 273 164 64 chr15 48044185 48045046 -53335475 + HAL1 LINE L1 1561 2507 0 268 338 101 0 chr15 48045092 48045240 -53335281 - MIR SINE MIR 0 262 100 22 0 0 0 chr15 48045490 48045512 -53335009 + AT_rich Low_complexity Low_complexity 1 22 0 218 311 126 11 chr15 48045595 48045778 -53334743 + L2 LINE L2 2302 2505 -809 30 27 0 0 chr15 48046953 48046990 -53333531 + AT_rich Low_complexity Low_complexity 1 37 0 489 350 79 35 chr15 48047277 48047617 -53332904 + L2 LINE L2 2877 3231 -41 23 54 0 0 chr15 48047783 48047820 -53332701 + AT_rich Low_complexity Low_complexity 1 37 0 1540 179 0 15 chr15 48047871 48048139 -53332382 + AluJo SINE Alu 28 291 -21 458 17 17 0 chr15 48048139 48048198 -53332323 + (TG)n Simple_repeat Simple_repeat 1 60 0 23 54 0 0 chr15 48048652 48048689 -53331832 + AT_rich Low_complexity Low_complexity 1 37 0 851 281 164 52 chr15 48048917 48048961 -53331560 - L2 LINE L2 -5 3308 3270 2109 128 0 0 chr15 48048961 48049259 -53331262 - AluSg SINE Alu -12 298 1 851 281 164 52 chr15 48049259 48049720 -53330801 - L2 LINE L2 -43 3270 2705 1658 193 23 0 chr15 48049720 48050021 -53330500 + AluJb SINE Alu 1 308 -4 851 281 164 52 chr15 48050021 48050169 -53330352 - L2 LINE L2 -608 2705 2575 26508 114 23 21 chr15 48050732 48054996 -53325525 + L1P LINE L1 10 4281 -1865 6089 50 5 5 chr15 48054996 48055767 -53324754 + L1PA7 LINE L1 5373 6147 -7 31 68 0 0 chr15 48055785 48055844 -53324677 + AT_rich Low_complexity Low_complexity 1 59 0 181 268 36 18 chr15 48057527 48057583 -53322938 - L2 LINE L2 -1 3271 3215 180 0 0 0 chr15 48058103 48058123 -53322398 + (A)n Simple_repeat Simple_repeat 1 20 0 386 305 92 46 chr15 48059648 48059867 -53320654 + MIR SINE MIR 4 222 -40 231 297 237 0 chr15 48060048 48060166 -53320355 - MIR SINE MIR -70 192 47 286 233 68 14 chr15 48060407 48060480 -53320041 - MER5A DNA MER1_type 0 189 113 257 194 69 28 chr15 48060425 48060497 -53320024 + MER5A DNA MER1_type 35 109 -80 * 445 280 93 18 chr15 48060510 48060735 -53319786 + L1MC/D LINE L1 5574 5815 -1993 1914 171 0 0 chr15 48060742 48061040 -53319481 + AluJb SINE Alu 1 298 -14 325 308 100 15 chr15 48061389 48061519 -53319002 + L2 LINE L2 3173 3313 0 331 231 259 21 chr15 48061745 48061888 -53318633 - MIR SINE MIR -1 261 85 1750 142 71 34 chr15 48062986 48063311 -53317210 + MER1B DNA MER1_type 1 337 0 26 0 0 0 chr15 48064752 48064778 -53315743 + AT_rich Low_complexity Low_complexity 1 26 0 328 233 104 75 chr15 48064795 48065035 -53315486 - L1MC4a LINE L1 -1750 6058 5812 6224 8 0 0 chr15 48065051 48065755 -53314766 - L1HS LINE L1 0 6155 5452 558 169 0 0 chr15 48065855 48065944 -53314577 - AluJ/FLAM SINE Alu -223 89 1 557 216 96 112 chr15 48066072 48066233 -53314288 - L1MC4 LINE L1 -4 8038 7876 1923 148 3 3 chr15 48066233 48066537 -53313984 - AluSx SINE Alu -2 310 7 557 216 96 112 chr15 48066537 48066731 -53313790 - L1MC4 LINE L1 -166 7876 7689 21 36 0 0 chr15 48066968 48066996 -53313525 + AT_rich Low_complexity Low_complexity 1 28 0 223 300 0 0 chr15 48067367 48067427 -53313094 - L2 LINE L2 -4 3268 3209 5290 24 0 0 chr15 48070009 48070633 -53309888 - L1P LINE L1 -1660 4486 3863 849 265 154 24 chr15 48070633 48071093 -53309428 - L1MC4a LINE L1 -1985 5823 5304 7518 30 0 0 chr15 48072388 48073354 -53307167 - L1PA4 LINE L1 -6 6149 5185 1673 161 3 67 chr15 48073377 48073693 -53306828 - AluJb SINE Alu -16 296 1 395 289 14 50 chr15 48074975 48075193 -53305328 + L1ME LINE L1 5555 5764 -357 725 172 57 0 chr15 48075783 48075905 -53304616 - FLAM_A SINE Alu -4 129 1 256 254 107 49 chr15 48075957 48076079 -53304442 - L2 LINE L2 -3 3310 3182 40037 45 5 2 chr15 48076162 48081397 -53299124 + L1P LINE L1 1 5251 -895 4524 164 43 52 chr15 48081526 48082435 -53298086 + MER54A LTR ERVL 1 901 0 492 256 40 54 chr15 48082461 48082533 -53297988 + L1MC4 LINE L1 6480 6551 -1491 2202 116 0 0 chr15 48082533 48082827 -53297694 + AluY SINE Alu 1 294 -17 492 256 40 54 chr15 48082827 48082977 -53297544 + L1MC4 LINE L1 6551 6699 -1343 280 204 31 82 chr15 48083040 48083138 -53297383 - L1MC4 LINE L1 -1290 6752 6660 * 4861 189 110 19 chr15 48083086 48084359 -53296162 + L1MC4 LINE L1 6654 8042 0 1467 251 118 14 chr15 48084385 48085157 -53295364 + L1ME3A LINE L1 5119 5962 -208 233 261 76 50 chr15 48085217 48085336 -53295185 + L1ME3A LINE L1 5970 6091 -79 3304 35 0 0 chr15 48085447 48085841 -53294680 - L1PA4 LINE L1 0 6155 5762 596 231 84 74 chr15 48086440 48086751 -53293770 + L1MEd LINE L1 785 1098 -5311 3496 238 131 18 chr15 48086763 48087310 -53293211 + L1MDb LINE L1 3304 3788 -2618 2082 131 0 3 chr15 48087310 48087615 -53292906 + AluSg SINE Alu 1 304 -6 3496 238 131 18 chr15 48087615 48088843 -53291678 + L1MDb LINE L1 3788 5286 -1120 1986 156 0 0 chr15 48088935 48089224 -53291297 - AluSx SINE Alu -23 289 1 2772 28 0 0 chr15 48089248 48089566 -53290955 - AluYb8 SINE Alu 0 318 1 1953 92 48 4 chr15 48089946 48090218 -53290303 - AluSq SINE Alu -29 284 1 502 265 105 56 chr15 48090476 48090600 -53289921 + L1MEd LINE L1 1218 1334 -5253 2066 124 3 7 chr15 48090600 48090898 -53289623 + AluSx SINE Alu 1 297 -15 2515 69 0 0 chr15 48090898 48091203 -53289318 + AluY SINE Alu 1 305 -6 502 265 105 56 chr15 48091203 48091640 -53288881 + L1MEd LINE L1 1334 1748 -4839 2186 114 3 0 chr15 48091640 48091937 -53288584 + AluSx SINE Alu 14 311 -1 3502 129 9 5 chr15 48091937 48092495 -53288026 + L1PA15 LINE L1 5606 6165 0 502 265 105 56 chr15 48092495 48092654 -53287867 + L1MEd LINE L1 1747 2007 -4580 737 275 108 30 chr15 48092816 48093105 -53287416 + L1MEd LINE L1 2223 2488 -3918 1721 158 25 76 chr15 48093105 48093370 -53287151 + MER7A DNA MER2_type 1 241 -2797 2303 106 0 3 chr15 48093370 48093671 -53286850 + AluSq SINE Alu 1 300 -13 1721 158 25 76 chr15 48093671 48093772 -53286749 + MER7A DNA MER2_type 241 346 0 737 275 108 30 chr15 48093772 48094210 -53286311 + L1MEd LINE L1 2488 3004 -3402 2492 61 0 0 chr15 48094210 48094506 -53286015 + AluY SINE Alu 1 296 -15 737 275 108 30 chr15 48094506 48094670 -53285851 + L1MEd LINE L1 3004 3154 -3252 566 271 90 18 chr15 48094690 48095136 -53285385 + L1MEd LINE L1 3228 3705 -2701 258 227 0 0 chr15 48095197 48095263 -53285258 + L1ME4a LINE L1 5983 6048 -73 313 374 0 17 chr15 48095320 48095435 -53285086 + MIR SINE MIR 30 142 -66 235 250 0 0 chr15 48095435 48095487 -53285034 + LTR30 LTR ERV1 1 52 -670 403 179 28 117 chr15 48095491 48095670 -53284851 + LTR12 LTR ERV1 123 285 -429 329 178 44 33 chr15 48095670 48095760 -53284761 + LTR30 LTR ERV1 552 642 -80 661 120 0 0 chr15 48095763 48095863 -53284658 + LTR12 LTR ERV1 615 714 0 6759 112 27 16 chr15 48096106 48097165 -53283356 - MER11C LTR ERVK 0 1071 1 21 0 0 0 chr15 48097366 48097387 -53283134 + AT_rich Low_complexity Low_complexity 1 21 0 1582 183 61 26 chr15 48097690 48098067 -53282454 + MLT1B LTR MaLR 1 390 0 196 333 18 0 chr15 48098417 48098474 -53282047 - L2 LINE L2 -19 3294 3237 1454 274 111 26 chr15 48098476 48098973 -53281548 - L2 LINE L2 -518 2796 2258 316 277 40 79 chr15 48099013 48099124 -53281397 - L2 LINE L2 -1650 1664 1563 1071 206 0 18 chr15 48099124 48099343 -53281178 - MER20 DNA MER1_type 0 219 5 316 277 40 79 chr15 48099343 48099433 -53281088 - L2 LINE L2 -1751 1563 1471 2296 118 3 0 chr15 48100379 48100684 -53279837 + AluSx SINE Alu 1 306 -6 357 315 102 32 chr15 48100712 48100928 -53279593 - L3 LINE CR1 -1135 442 212 23 0 0 0 chr15 48102269 48102292 -53278229 + AT_rich Low_complexity Low_complexity 1 23 0 211 184 0 0 chr15 48103531 48103569 -53276952 + (CCCA)n Simple_repeat Simple_repeat 2 39 0 237 125 62 16 chr15 48103755 48103819 -53276702 + (TTA)n Simple_repeat Simple_repeat 3 69 0 259 370 55 11 chr15 48107715 48107896 -53272625 - L2 LINE L2 -498 2816 2628 2253 224 13 40 chr15 48109500 48109671 -53270850 - MLT1F LTR MaLR 0 542 368 1411 171 16 32 chr15 48109671 48109986 -53270535 + L1MB8 LINE L1 5869 6178 0 2253 224 13 40 chr15 48109986 48110371 -53270150 - MLT1F LTR MaLR -174 368 1 2053 116 3 3 chr15 48110411 48110703 -53269818 + AluSp SINE Alu 1 292 -21 22 0 0 0 chr15 48110832 48110854 -53269667 + AT_rich Low_complexity Low_complexity 1 22 0 606 255 247 27 chr15 48111149 48111568 -53268953 - MLT1H LTR MaLR -23 526 6 2060 92 48 27 chr15 48112313 48112605 -53267916 + AluSq SINE Alu 1 298 -15 695 278 75 53 chr15 48112797 48113117 -53267404 + MLT1J LTR MaLR 25 351 -160 1898 152 13 13 chr15 48113119 48113471 -53267050 + AluJb SINE Alu 2 353 0 494 226 62 0 chr15 48113498 48113644 -53266877 + MLT1J LTR MaLR 356 510 -1 396 59 0 0 chr15 48113651 48113702 -53266819 + (TG)n Simple_repeat Simple_repeat 2 52 0 229 283 0 0 chr15 48113705 48113758 -53266763 + L2 LINE L2 3204 3256 -16 1988 147 78 13 chr15 48114634 48115029 -53265492 + L1MB5 LINE L1 5746 6166 -8 239 289 109 26 chr15 48115069 48115225 -53265296 + L1ME4a LINE L1 5952 6120 -1 444 214 7 43 chr15 48115861 48116001 -53264520 - LTR37B LTR ERV1 0 468 334 198 255 99 57 chr15 48116338 48116479 -53264042 - L2 LINE L2 -15 3298 3152 334 268 0 0 chr15 48116718 48116800 -53263721 - MIR SINE MIR -74 188 107 1562 179 19 51 chr15 48118034 48118204 -53262317 - AluJo SINE Alu -10 302 128 228 35 0 0 chr15 48118204 48118233 -53262288 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2117 102 3 0 chr15 48118233 48118516 -53262005 - AluSp SINE Alu -29 284 1 1562 179 19 51 chr15 48118516 48118656 -53261865 - AluJo SINE Alu -182 130 1 3281 124 36 2 chr15 48118947 48119472 -53261049 - MER41B LTR ERV1 -88 547 5 3682 85 34 6 chr15 48119475 48120004 -53260517 - MER41B-int LTR ERV1 0 5946 5403 * 10262 121 21 11 chr15 48120001 48121584 -53258937 - MER41A-int LTR ERV1 -4347 1599 1 824 138 0 72 chr15 48121584 48121708 -53258813 - MER41A LTR ERV1 0 554 443 2443 60 0 7 chr15 48121708 48122008 -53258513 + AluY SINE Alu 1 298 -13 824 138 0 72 chr15 48122008 48122050 -53258471 - MER41A LTR ERV1 -111 443 400 1211 174 41 9 chr15 48122484 48122702 -53257819 - AluJb SINE Alu -3 309 85 813 183 0 0 chr15 48122857 48122988 -53257533 - FLAM_C SINE Alu -2 131 1 2417 93 0 3 chr15 48123029 48123341 -53257180 - AluSx SINE Alu -1 311 1 1369 202 62 35 chr15 48123350 48123785 -53256736 - HsTC2 DNA Tc2 0 1898 1276 272 203 39 148 chr15 48123872 48123907 -53256614 - MER5A DNA MER1_type -31 158 121 2411 86 0 0 chr15 48123907 48124211 -53256310 + AluSc SINE Alu 1 304 -5 272 203 39 148 chr15 48124211 48124303 -53256218 - MER5A DNA MER1_type -68 121 45 872 270 45 9 chr15 48124314 48124536 -53255985 + MIR SINE MIR 23 252 -10 32 26 0 0 chr15 48124543 48124582 -53255939 + AT_rich Low_complexity Low_complexity 1 39 0 1947 154 3 7 chr15 48124749 48125041 -53255480 + AluSx SINE Alu 1 291 -21 2406 84 0 7 chr15 48125043 48125352 -53255169 + AluSg SINE Alu 1 307 -3 2316 103 0 0 chr15 48125359 48125670 -53254851 + AluY SINE Alu 1 311 0 22 35 0 0 chr15 48125675 48125704 -53254817 + AT_rich Low_complexity Low_complexity 1 29 0 211 226 226 20 chr15 48126113 48126215 -53254306 - L2 LINE L2 -3 3269 3147 559 287 130 9 chr15 48127303 48127519 -53253002 + MIR SINE MIR 20 261 -1 2385 90 0 0 chr15 48127519 48127818 -53252703 + AluSx SINE Alu 1 299 -13 2163 130 0 0 chr15 48127840 48128139 -53252382 - AluSq SINE Alu -14 299 1 21 0 0 0 chr15 48128188 48128209 -53252312 + AT_rich Low_complexity Low_complexity 1 21 0 2086 121 29 13 chr15 48128234 48128541 -53251980 - AluSx SINE Alu 0 312 1 410 260 240 7 chr15 48129252 48129402 -53251119 - MIR SINE MIR -27 235 51 282 364 164 14 chr15 48129560 48129846 -53250675 + L3 LINE CR1 142 470 -1107 898 240 61 43 chr15 48130039 48130424 -53250097 - L1ME2 LINE L1 -7 6159 5741 475 288 212 17 chr15 48130613 48130905 -53249616 + L3 LINE CR1 548 896 -681 278 324 28 37 chr15 48130961 48131069 -53249452 + L3 LINE CR1 1041 1147 -430 1494 236 68 47 chr15 48131074 48131369 -53249152 - L2 LINE L2 0 3313 3025 1600 195 46 6 chr15 48131369 48131697 -53248824 + MER58B DNA MER1_type 1 341 0 1494 236 68 47 chr15 48131697 48131982 -53248539 - L2 LINE L2 -288 3025 2711 1190 208 57 59 chr15 48132000 48132130 -53248391 + Charlie4a DNA MER1_type 53 182 -1779 2243 96 0 7 chr15 48132130 48132423 -53248098 - AluSx SINE Alu -15 297 7 1190 208 57 59 chr15 48132423 48132554 -53247967 + Charlie4a DNA MER1_type 182 312 -1649 6822 40 9 75 chr15 48132554 48133579 -53246942 + L1PA6 LINE L1 5189 6151 -3 1190 208 57 59 chr15 48133579 48133754 -53246767 + Charlie4a DNA MER1_type 312 489 -19 248 150 0 0 chr15 48133846 48133886 -53246635 + MIR SINE MIR 223 262 0 390 251 59 87 chr15 48133937 48134224 -53246297 - L1ME4a LINE L1 -214 5907 5629 222 37 0 0 chr15 48134388 48134415 -53246106 + (CA)n Simple_repeat Simple_repeat 2 28 0 30 59 0 0 chr15 48134982 48135033 -53245488 + AT_rich Low_complexity Low_complexity 1 51 0 239 132 26 0 chr15 48135298 48135336 -53245185 + L2 LINE L2 1370 1408 -1906 1076 256 81 77 chr15 48135342 48135849 -53244672 + L2 LINE L2 2804 3312 -1 182 243 147 22 chr15 48136006 48136142 -53244379 - L2 LINE L2 -923 2391 2239 3476 104 24 4 chr15 48136697 48137199 -53243322 + MER41E LTR ERV1 1 512 0 273 57 0 0 chr15 48137218 48137253 -53243268 + (TA)n Simple_repeat Simple_repeat 2 36 0 246 193 23 45 chr15 48137257 48137345 -53243176 + L1MC4 LINE L1 6617 6702 -1340 235 286 226 0 chr15 48137523 48137607 -53242914 + L2 LINE L2 3154 3256 -16 1296 183 58 4 chr15 48137721 48137978 -53242543 - L1MC3 LINE L1 -842 6943 6673 875 163 132 36 chr15 48137983 48138234 -53242287 - MER33 DNA MER1_type -32 292 18 1324 234 98 44 chr15 48138250 48138402 -53242119 - L1ME4a LINE L1 -1103 5043 4901 1957 150 3 3 chr15 48138402 48138709 -53241812 + AluSx SINE Alu 1 307 -5 1324 234 98 44 chr15 48138709 48139152 -53241369 - L1ME4a LINE L1 -1245 4901 4410 2018 147 0 13 chr15 48139152 48139493 -53241028 - AluSx SINE Alu 0 312 1 1324 234 98 44 chr15 48139493 48139529 -53240992 - L1ME4a LINE L1 -1736 4410 4377 22 0 0 0 chr15 48139541 48139563 -53240958 + AT_rich Low_complexity Low_complexity 1 22 0 892 151 0 70 chr15 48139580 48139676 -53240845 + MER2 DNA MER2_type 2 80 -265 5885 58 30 16 chr15 48139676 48140445 -53240076 - LTR17 LTR ERV1 0 780 1 892 151 0 70 chr15 48140445 48140533 -53239988 + MER2 DNA MER2_type 80 173 -172 267 312 0 0 chr15 48140616 48140693 -53239828 + MER2 DNA MER2_type 269 345 0 339 306 11 94 chr15 48140697 48140782 -53239739 - L1ME4a LINE L1 -1811 4335 4245 2324 82 0 23 chr15 48140782 48141087 -53239434 + AluY SINE Alu 1 298 -13 339 306 11 94 chr15 48141087 48141129 -53239392 - L1ME4a LINE L1 -1901 4245 4201 3179 120 17 77 chr15 48141129 48141215 -53239306 - MER34B LTR ERV1 0 565 475 2147 108 0 14 chr15 48141215 48141525 -53238996 + AluSx SINE Alu 1 306 0 3179 120 17 77 chr15 48141525 48141761 -53238760 - MER34B LTR ERV1 -90 475 292 2353 74 7 3 chr15 48141761 48142057 -53238464 - AluY SINE Alu -14 297 1 3179 120 17 77 chr15 48142057 48142333 -53238188 - MER34B LTR ERV1 -273 292 1 339 306 11 94 chr15 48142333 48142384 -53238137 - L1ME4a LINE L1 -1945 4201 4171 333 264 28 0 chr15 48142431 48142537 -53237984 + L1ME LINE L1 5551 5659 -462 1877 153 10 3 chr15 48142715 48143022 -53237499 + AluJb SINE Alu 3 311 -1 243 111 0 0 chr15 48143101 48143137 -53237384 + MER51A LTR ERV1 1 36 -598 * 1334 140 149 69 chr15 48143135 48143485 -53237036 + MER51A LTR ERV1 257 634 0 191 225 0 0 chr15 48143569 48143609 -53236912 - MER5B DNA MER1_type -1 177 138 637 169 58 0 chr15 48143609 48143763 -53236758 - L1M4 LINE L1 -1055 5091 4929 433 197 95 7 chr15 48143762 48143909 -53236612 + L1M4 LINE L1 5091 5250 -896 * 941 112 0 0 chr15 48143984 48144127 -53236394 - L1MA5A LINE L1 -19 6278 6136 816 244 111 11 chr15 48144300 48144570 -53235951 - MER5C DNA MER1_type 0 324 28 195 186 0 0 chr15 48144738 48144781 -53235740 + (TA)n Simple_repeat Simple_repeat 2 44 0 3260 178 15 0 chr15 48144809 48145395 -53235126 - L1PB4 LINE L1 -14 6142 5548 334 259 99 23 chr15 48145911 48146042 -53234479 - L2 LINE L2 -212 3060 2920 756 235 0 32 chr15 48146052 48146255 -53234266 - L1PA16 LINE L1 -303 5863 5666 2074 124 10 0 chr15 48146255 48146416 -53234105 - AluSx SINE Alu -18 294 127 2290 97 0 7 chr15 48146416 48146714 -53233807 - AluSg SINE Alu -14 296 1 2074 124 10 0 chr15 48146714 48146843 -53233678 - AluSx SINE Alu -185 127 1 756 235 0 32 chr15 48146843 48146860 -53233661 - L1PA16 LINE L1 -500 5666 5650 1910 194 90 11 chr15 48146860 48147413 -53233108 - MER69B DNA AcHobo -99 1127 531 414 238 40 0 chr15 48147422 48147548 -53232973 - L1M4 LINE L1 -3866 2280 2150 1845 244 73 4 chr15 48147611 48148091 -53232430 - MER69B DNA AcHobo -707 519 7 2109 143 10 0 chr15 48148606 48148913 -53231608 - AluSx SINE Alu -2 310 1 638 256 120 47 chr15 48149081 48149758 -53230763 - L1MC5 LINE L1 -67 7894 7289 1323 163 7 58 chr15 48149762 48150057 -53230464 - L1MB7 LINE L1 -5 6179 5900 1242 137 0 9 chr15 48150223 48150442 -53230079 - L1MB3 LINE L1 -7 6176 5960 22 0 0 0 chr15 48150453 48150475 -53230046 + AT_rich Low_complexity Low_complexity 1 22 0 2043 128 3 3 chr15 48150484 48150781 -53229740 - AluSq SINE Alu -16 297 1 225 326 0 76 chr15 48151089 48151181 -53229340 + MER5B DNA MER1_type 8 92 -86 907 246 55 64 chr15 48151181 48151726 -53228795 - L1MC4 LINE L1 -565 7477 6938 1299 210 55 18 chr15 48151753 48152096 -53228425 - L1ME3 LINE L1 0 6162 5807 310 287 16 16 chr15 48152165 48152294 -53228227 - L1ME3 LINE L1 -515 5606 5478 2057 173 26 62 chr15 48152893 48153395 -53227126 + MLT1D LTR MaLR 22 505 0 423 284 163 5 chr15 48153395 48153610 -53226911 - L1ME3 LINE L1 -2305 5503 5255 1369 223 23 7 chr15 48153692 48154014 -53226507 - AluJo SINE Alu 0 312 1 1771 208 0 0 chr15 48154075 48154378 -53226143 + AluJb SINE Alu 1 303 -9 1595 184 4 4 chr15 48154475 48154747 -53225774 - AluJb SINE Alu -3 309 38 1629 179 71 22 chr15 48154787 48155151 -53225370 + MSTD LTR MaLR 9 390 -6 191 250 0 0 chr15 48155193 48155229 -53225292 - L2 LINE L2 -670 2644 2609 563 283 70 46 chr15 48155364 48155722 -53224799 - L2 LINE L2 -1 3312 2853 900 264 37 7 chr15 48155724 48156090 -53224431 + LTR33 LTR ERVL 6 439 -82 238 174 43 152 chr15 48156090 48156182 -53224339 - L2 LINE L2 -597 2717 2636 713 291 167 34 chr15 48156267 48156710 -53223811 - L2 LINE L2 0 3313 2812 312 245 14 82 chr15 48157237 48157384 -53223137 - L1MC5 LINE L1 -73 7888 7752 729 250 27 59 chr15 48157384 48157640 -53222881 - L2 LINE L2 -17 3296 3049 1342 244 28 19 chr15 48157644 48158032 -53222489 + LTR16A LTR ERVL 1 450 0 801 301 7 14 chr15 48158034 48158321 -53222200 - L2 LINE L2 -266 3047 2763 1862 155 14 0 chr15 48158869 48159174 -53221347 + AluJb SINE Alu 1 309 0 264 253 152 0 chr15 48160588 48160687 -53219834 - L2 LINE L2 -5 3267 3154 1530 188 44 0 chr15 48161105 48161273 -53219248 - AluJo SINE Alu -1 311 123 285 29 0 0 chr15 48161273 48161307 -53219214 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1530 188 44 0 chr15 48161307 48161436 -53219085 - AluJo SINE Alu -189 123 1 249 372 44 35 chr15 48162261 48162374 -53218147 - L2 LINE L2 -42 3230 3117 597 226 28 94 chr15 48162717 48162939 -53217582 + L1MC5 LINE L1 7560 7746 -215 1717 116 0 8 chr15 48162939 48163190 -53217331 - AluSc SINE Alu -1 308 60 597 226 28 94 chr15 48163190 48163361 -53217160 + L1MC5 LINE L1 7746 7927 -34 22 0 0 0 chr15 48163362 48163384 -53217137 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr15 48163643 48163674 -53216847 + AT_rich Low_complexity Low_complexity 1 31 0 328 268 98 16 chr15 48163862 48163985 -53216536 + L2 LINE L2 3177 3309 -4 251 241 84 48 chr15 48164482 48164565 -53215956 - MIR SINE MIR -59 203 118 25 0 0 0 chr15 48166836 48166861 -53213660 + AT_rich Low_complexity Low_complexity 1 25 0 391 318 95 0 chr15 48167320 48167468 -53213053 - MIR SINE MIR -66 196 35 756 331 79 26 chr15 48168255 48168751 -53211770 + L2 LINE L2 2174 2695 -619 1689 134 0 0 chr15 48168758 48169004 -53211517 + AluSx SINE Alu 61 306 -6 214 353 0 0 chr15 48169004 48169072 -53211449 + L2 LINE L2 2776 2843 -471 196 283 178 56 chr15 48169095 48169275 -53211246 + L2 LINE L2 3112 3313 0 258 373 109 0 chr15 48170310 48170420 -53210101 + L2 LINE L2 3151 3272 0 336 24 0 0 chr15 48171085 48171126 -53209395 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 409 38 0 0 chr15 48171578 48171631 -53208890 + MADE1 DNA Mariner 1 53 -27 236 386 75 35 chr15 48172936 48173190 -53207331 - L2 LINE L2 -77 3195 2932 300 188 0 0 chr15 48173771 48173835 -53206686 + (TG)n Simple_repeat Simple_repeat 2 65 0 1669 155 39 14 chr15 48173916 48174193 -53206328 + AluJo SINE Alu 1 287 -25 180 0 0 0 chr15 48174193 48174213 -53206308 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1053 305 120 41 chr15 48175245 48176078 -53204443 - L2 LINE L2 -9 3263 2364 308 319 35 18 chr15 48176977 48177090 -53203431 - L2 LINE L2 0 3272 3158 2769 115 15 58 chr15 48177114 48177583 -53202938 - L1MA9 LINE L1 0 6312 5864 189 0 0 0 chr15 48177829 48177850 -53202671 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 24 0 0 0 chr15 48178542 48178566 -53201955 + AT_rich Low_complexity Low_complexity 1 24 0 2411 86 0 0 chr15 48179152 48179456 -53201065 + AluSx SINE Alu 1 304 -8 811 200 79 30 chr15 48180015 48180180 -53200341 + FAM SINE Alu 1 173 -2 1917 158 0 16 chr15 48180671 48180987 -53199534 + AluSx SINE Alu 1 311 -1 2009 139 81 0 chr15 48180989 48181333 -53199188 - MSTA LTR MaLR -56 372 1 284 274 125 53 chr15 48181446 48181536 -53198985 - L1ME4a LINE L1 -60 6061 5979 297 0 0 0 chr15 48181536 48181569 -53198952 + (TG)n Simple_repeat Simple_repeat 2 34 0 284 274 125 53 chr15 48181569 48181686 -53198835 - L1ME4a LINE L1 -142 5979 5839 * 364 264 51 76 chr15 48181677 48181808 -53198713 + L1ME4a LINE L1 5588 5714 -407 1043 210 35 0 chr15 48181808 48182008 -53198513 - MER3 DNA MER1_type -2 207 1 364 264 51 76 chr15 48182008 48182073 -53198448 + L1ME4a LINE L1 5714 5779 -342 196 140 60 0 chr15 48182194 48182244 -53198277 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 212 264 68 135 chr15 48182775 48182938 -53197583 + L3 LINE CR1 1291 1442 -135 723 284 96 39 chr15 48182941 48183275 -53197246 - MLT1K LTR MaLR -31 557 205 319 258 129 61 chr15 48183436 48183568 -53196953 + L3 LINE CR1 1434 1574 -3 306 222 63 32 chr15 48184487 48184613 -53195908 + L1ME4a LINE L1 5773 5902 -219 521 293 50 39 chr15 48185197 48185247 -53195274 + MIR3 SINE MIR 2 50 -158 180 0 0 0 chr15 48185247 48185267 -53195254 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 521 293 50 39 chr15 48185267 48185397 -53195124 + MIR3 SINE MIR 50 184 -24 1235 185 143 0 chr15 48186045 48186283 -53194238 + AluJb SINE Alu 1 272 -40 1782 52 5 0 chr15 48186285 48186495 -53194026 + L1PA5 LINE L1 5939 6149 -5 180 0 0 0 chr15 48186656 48186676 -53193845 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1999 112 4 4 chr15 48186683 48186960 -53193561 - AluSx SINE Alu -35 277 1 356 162 216 14 chr15 48187282 48187356 -53193165 + AluJb SINE Alu 195 283 -19 463 282 108 33 chr15 48187880 48188093 -53192428 - L1MC4 LINE L1 -1042 7000 6772 440 281 72 26 chr15 48188373 48188526 -53191995 + MER117 DNA MER1_type 24 183 -14 492 99 0 0 chr15 48188612 48188683 -53191838 + (TA)n Simple_repeat Simple_repeat 1 71 0 4038 141 61 13 chr15 48188692 48189164 -53191357 - L1MB3 LINE L1 -1 6182 5663 300 53 0 0 chr15 48189164 48189202 -53191319 + (TA)n Simple_repeat Simple_repeat 2 39 0 4038 141 61 13 chr15 48189202 48189433 -53191088 - L1MB3 LINE L1 -520 5663 5445 1985 147 0 13 chr15 48189923 48190229 -53190292 - AluSx SINE Alu -10 302 1 240 35 0 0 chr15 48191082 48191111 -53189410 + (TAA)n Simple_repeat Simple_repeat 1 29 0 183 262 66 0 chr15 48191612 48191673 -53188848 + MIR3 SINE MIR 137 201 -7 483 264 43 7 chr15 48191981 48192121 -53188400 - MIR3 SINE MIR -60 148 4 841 232 17 11 chr15 48192797 48192974 -53187547 - MER5B DNA MER1_type 0 178 1 2145 90 0 13 chr15 48192978 48193277 -53187244 + AluY SINE Alu 2 296 -15 568 194 35 56 chr15 48193384 48193407 -53187114 + MIR SINE MIR 51 73 -189 2934 98 0 8 chr15 48193407 48193785 -53186736 - THE1C LTR MaLR 0 375 1 568 194 35 56 chr15 48193785 48193905 -53186616 + MIR SINE MIR 73 191 -71 360 0 0 0 chr15 48194066 48194106 -53186415 + (TA)n Simple_repeat Simple_repeat 2 41 0 2604 40 0 49 chr15 48194111 48194438 -53186083 - AluY SINE Alu 0 311 1 390 232 212 50 chr15 48194540 48194738 -53185783 - L2 LINE L2 0 3313 3084 1753 167 3 33 chr15 48194993 48195298 -53185223 - AluJb SINE Alu -16 296 1 949 262 93 4 chr15 48195316 48195595 -53184926 - LTR16C LTR ERVL 0 491 188 620 171 8 43 chr15 48196048 48196165 -53184356 - AluJo SINE Alu -178 134 22 790 257 67 9 chr15 48196406 48196616 -53183905 + MIR SINE MIR 25 246 -16 370 281 56 9 chr15 48196903 48197034 -53183487 + MIR SINE MIR 17 154 -73 443 204 150 20 chr15 48198027 48198174 -53182347 - L1MC5 LINE L1 -32 7929 7764 811 220 11 11 chr15 48198947 48199124 -53181397 + MER5B DNA MER1_type 2 178 0 435 163 380 0 chr15 48199286 48199415 -53181106 - MER104 DNA MER2_type 0 180 3 203 211 14 84 chr15 48200175 48200246 -53180275 - L3 LINE CR1 -1377 200 135 2247 92 0 0 chr15 48200264 48200558 -53179963 - AluY SINE Alu -16 295 2 246 152 0 43 chr15 48200562 48200608 -53179913 + MER5B DNA MER1_type 1 44 -134 275 221 242 0 chr15 48200912 48201007 -53179514 + MIR SINE MIR 53 170 -92 4264 156 38 79 chr15 48201029 48201346 -53179175 - MER21A LTR ERV1 -30 901 573 1991 128 9 41 chr15 48201346 48201490 -53179031 + AluJo SINE Alu 1 148 -164 2303 98 3 0 chr15 48201490 48201786 -53178735 + AluY SINE Alu 1 297 -14 1991 128 9 41 chr15 48201786 48201960 -53178561 + AluJo SINE Alu 148 309 -3 4264 156 38 79 chr15 48201960 48202568 -53177953 - MER21A LTR ERV1 -358 573 14 402 74 0 0 chr15 48202587 48202641 -53177880 + (CAGA)n Simple_repeat Simple_repeat 3 56 0 262 239 99 0 chr15 48203307 48203378 -53177143 + MIR SINE MIR 35 112 -96 * 474 218 30 0 chr15 48203375 48203476 -53177045 + MER5A DNA MER1_type 9 112 -77 271 240 21 52 chr15 48203536 48203632 -53176889 + MIR SINE MIR 114 206 -56 259 211 0 0 chr15 48205027 48205079 -53175442 + LTR30 LTR ERV1 1 52 -670 1062 106 15 164 chr15 48205079 48205353 -53175168 + LTR12 LTR ERV1 53 285 -429 247 227 57 23 chr15 48205354 48205442 -53175079 + LTR30 LTR ERV1 553 643 -79 651 141 10 0 chr15 48205444 48205543 -53174978 + LTR12 LTR ERV1 615 714 0 198 313 153 56 chr15 48206048 48206192 -53174329 - MIR3 SINE MIR -21 187 30 25 75 0 0 chr15 48208288 48208341 -53172180 + AT_rich Low_complexity Low_complexity 1 53 0 506 183 0 8 chr15 48208996 48209122 -53171399 + GA-rich Low_complexity Low_complexity 2 126 0 345 223 107 19 chr15 48209958 48210061 -53170460 + MIR SINE MIR 81 192 -70 251 239 14 0 chr15 48210089 48210160 -53170361 + (TA)n Simple_repeat Simple_repeat 2 73 0 277 294 111 32 chr15 48210205 48210331 -53170190 - MIR SINE MIR -103 159 24 249 307 13 0 chr15 48210810 48210885 -53169636 + MLT1K LTR MaLR 95 170 -418 415 186 97 97 chr15 48211081 48211226 -53169295 + MLT1K LTR MaLR 444 588 0 279 114 0 0 chr15 48211444 48211488 -53169033 + (TGGA)n Simple_repeat Simple_repeat 2 45 0 356 298 0 26 chr15 48211585 48211699 -53168822 + LTR33 LTR ERVL 23 133 -388 854 214 136 8 chr15 48211729 48211986 -53168535 + LTR33 LTR ERVL 232 521 0 547 253 180 64 chr15 48212363 48212548 -53167973 + MIR SINE MIR 3 165 -97 1551 128 66 29 chr15 48212548 48212791 -53167730 + AluSg SINE Alu 1 252 -58 333 0 0 0 chr15 48212797 48212834 -53167687 + (CA)n Simple_repeat Simple_repeat 2 38 0 547 253 180 64 chr15 48212834 48212874 -53167647 + MIR SINE MIR 169 262 0 2310 104 0 0 chr15 48212988 48213285 -53167236 + AluSx SINE Alu 1 297 -15 458 233 55 49 chr15 48213615 48213778 -53166743 - L2 LINE L2 -497 2817 2654 2255 117 0 0 chr15 48213849 48214158 -53166363 - AluY SINE Alu -2 309 1 1235 153 0 38 chr15 48214626 48214835 -53165686 + AluJb SINE Alu 1 201 -111 2204 117 0 0 chr15 48215407 48215706 -53164815 - AluY SINE Alu -12 299 1 1802 158 0 27 chr15 48216174 48216472 -53164049 + AluJb SINE Alu 1 290 -22 22 0 0 0 chr15 48216472 48216494 -53164027 + AT_rich Low_complexity Low_complexity 1 22 0 885 242 47 19 chr15 48216930 48217206 -53163315 + L1MB8 LINE L1 5889 6178 0 1384 246 123 24 chr15 48218722 48219364 -53161157 + L2 LINE L2 2537 3252 -61 457 281 91 63 chr15 48219396 48219561 -53160960 - L2 LINE L2 -170 3143 2967 1024 178 17 28 chr15 48219561 48219741 -53160780 - MER45A DNA AcHobo 0 178 1 457 281 91 63 chr15 48219741 48219828 -53160693 - L2 LINE L2 -346 2967 2884 2171 130 0 0 chr15 48219851 48220159 -53160362 + AluSg SINE Alu 1 308 -2 1928 132 7 3 chr15 48220847 48221135 -53159386 + AluJo SINE Alu 7 295 -17 1178 186 101 0 chr15 48221283 48221482 -53159039 + MER20 DNA MER1_type 1 219 0 374 310 76 0 chr15 48222010 48222168 -53158353 + MIR SINE MIR 90 259 -3 210 91 0 0 chr15 48223195 48223228 -53157293 + (CCCCCA)n Simple_repeat Simple_repeat 5 37 0 23 0 0 0 chr15 48223267 48223290 -53157231 + GC_rich Low_complexity Low_complexity 1 23 0 34 42 0 0 chr15 48223486 48223534 -53156987 + GC_rich Low_complexity Low_complexity 1 48 0 207 175 0 0 chr15 48223618 48223658 -53156863 + CT-rich Low_complexity Low_complexity 2 41 0 185 295 63 42 chr15 48225188 48225283 -53155238 + L2 LINE L2 3129 3225 -47 21 36 0 0 chr15 48225284 48225312 -53155209 + AT_rich Low_complexity Low_complexity 1 28 0 189 274 78 0 chr15 48225481 48225532 -53154989 - L2 LINE L2 -80 3192 3138 1454 184 41 0 chr15 48225603 48225870 -53154651 + AluJo SINE Alu 1 278 -34 2025 143 3 3 chr15 48225899 48226206 -53154315 - AluSx SINE Alu -5 307 1 905 285 87 76 chr15 48226343 48227418 -53153103 + L1M4 LINE L1 4029 5114 -1032 380 174 0 0 chr15 48227415 48227484 -53153037 - L1MB8 LINE L1 -21 6157 6089 * 6699 217 24 51 chr15 48227459 48227504 -53153017 - L1M4 LINE L1 -807 5339 5294 1670 146 25 77 chr15 48227504 48227586 -53152935 - L1MB4 LINE L1 -6 6174 6089 1944 142 3 0 chr15 48227586 48227874 -53152647 + AluSx SINE Alu 1 289 -23 208 53 53 0 chr15 48227884 48227922 -53152599 + (TA)n Simple_repeat Simple_repeat 2 41 0 1670 146 25 77 chr15 48227922 48227987 -53152534 - L1MB4 LINE L1 -100 6080 6013 2012 102 0 18 chr15 48227987 48228261 -53152260 - AluSx SINE Alu -17 295 27 1670 146 25 77 chr15 48228261 48228465 -53152056 - L1MB4 LINE L1 -167 6013 5830 6699 217 24 51 chr15 48228465 48228624 -53151897 - L1M4 LINE L1 -852 5294 5132 1551 194 0 14 chr15 48228624 48228913 -53151608 + AluJo SINE Alu 2 286 -26 222 37 0 0 chr15 48228913 48228940 -53151581 + (CATA)n Simple_repeat Simple_repeat 2 28 0 6699 217 24 51 chr15 48228940 48229099 -53151422 - L1M4 LINE L1 -1013 5133 4971 739 205 0 8 chr15 48229099 48229221 -53151300 - FLAM_A SINE Alu -11 122 2 6699 217 24 51 chr15 48229221 48230719 -53149802 - L1M4 LINE L1 -1175 4971 3525 3392 225 30 6 chr15 48230724 48231568 -53148953 + L1MB7 LINE L1 3148 4011 -2135 5021 167 25 16 chr15 48231574 48231595 -53148926 + L1MB7 LINE L1 5180 5199 -985 194 0 39 0 chr15 48231595 48231621 -53148900 + (CA)n Simple_repeat Simple_repeat 2 28 0 5021 167 25 16 chr15 48231621 48232585 -53147936 + L1MB7 LINE L1 5199 6178 -6 1248 176 76 113 chr15 48232595 48232847 -53147674 - L1MC5 LINE L1 -67 7894 7634 1986 115 0 66 chr15 48232847 48233180 -53147341 + AluSx SINE Alu 3 315 0 2114 88 4 0 chr15 48233180 48233443 -53147078 + AluSp SINE Alu 24 287 -26 1248 176 76 113 chr15 48233443 48233728 -53146793 - L1MC5 LINE L1 -325 7636 7374 426 267 74 78 chr15 48233846 48233938 -53146583 - MIR SINE MIR -46 216 125 2160 94 27 3 chr15 48233938 48234236 -53146285 + AluSc SINE Alu 1 305 -4 426 267 74 78 chr15 48234236 48234360 -53146161 - MIR SINE MIR -137 125 1 657 247 18 6 chr15 48234461 48234631 -53145890 - MLT1L LTR MaLR -5 610 439 237 135 0 0 chr15 48234634 48234671 -53145850 - MLT1L LTR MaLR -387 228 192 288 266 0 0 chr15 48234957 48235021 -53145500 + MIR3 SINE MIR 121 184 -24 197 250 54 65 chr15 48236217 48236309 -53144212 + MIR SINE MIR 110 200 -62 329 296 17 108 chr15 48238033 48238330 -53142191 + L1M2 LINE L1 673 942 -5907 21 36 0 0 chr15 48238459 48238487 -53142034 + GC_rich Low_complexity Low_complexity 1 28 0 384 237 163 0 chr15 48239090 48239225 -53141296 + MIR3 SINE MIR 45 201 -7 630 293 117 3 chr15 48239683 48239983 -53140538 + L1MC4 LINE L1 7140 7473 -569 567 286 63 49 chr15 48240010 48240437 -53140084 + L1MC4 LINE L1 7595 8027 -15 247 256 77 0 chr15 48241248 48241326 -53139195 + MER103 DNA DNA 22 105 -61 278 327 158 5 chr15 48242931 48243133 -53137388 - MIR SINE MIR -14 248 16 2417 79 0 0 chr15 48243659 48243964 -53136557 + AluSx SINE Alu 1 305 -7 1087 174 0 71 chr15 48244409 48244648 -53135873 + AluJo SINE Alu 86 309 0 912 294 168 34 chr15 48245075 48246118 -53134403 - L2 LINE L2 -3 3269 2040 264 264 0 0 chr15 48246126 48246179 -53134342 + MIR3 SINE MIR 149 201 -7 287 256 122 29 chr15 48246265 48246437 -53134084 - LTR33 LTR ERVL 0 521 334 463 205 94 0 chr15 48246545 48246662 -53133859 - LTR33 LTR ERVL -392 129 2 2069 187 85 35 chr15 48246699 48247067 -53133454 - MLT1D LTR MaLR 0 505 106 2259 113 0 3 chr15 48247067 48247368 -53133153 + AluSq SINE Alu 1 300 -13 2069 187 85 35 chr15 48247368 48247480 -53133041 - MLT1D LTR MaLR -399 106 1 1856 146 34 24 chr15 48247989 48248284 -53132237 + AluJo SINE Alu 1 298 -14 491 173 54 113 chr15 48248294 48248410 -53132111 - HsTC2 DNA Tc2 -2 1896 1775 2420 70 0 7 chr15 48248410 48248708 -53131813 + AluY SINE Alu 1 296 -15 491 173 54 113 chr15 48248708 48248719 -53131802 - HsTC2 DNA Tc2 -123 1775 1765 1508 186 7 17 chr15 48248719 48249010 -53131511 + AluJo SINE Alu 1 288 -24 491 173 54 113 chr15 48249010 48249066 -53131455 - HsTC2 DNA Tc2 -133 1765 1723 1725 200 35 52 chr15 48249071 48249473 -53131048 - L1ME1 LINE L1 0 6166 5772 1847 158 16 26 chr15 48249473 48249784 -53130737 - AluJo SINE Alu -4 308 1 1725 200 35 52 chr15 48249784 48249861 -53130660 - L1ME1 LINE L1 -394 5772 5695 1413 237 101 126 chr15 48249861 48250457 -53130064 - HsTC2 DNA Tc2 -163 1735 1 188 300 133 0 chr15 48250460 48250550 -53129971 - MIR3 SINE MIR -54 154 53 929 146 0 141 chr15 48250656 48250869 -53129652 + AluJb SINE Alu 104 286 -26 2095 104 14 0 chr15 48251561 48251841 -53128680 - AluSx SINE Alu -20 292 9 735 184 31 31 chr15 48252298 48252383 -53128138 - L1ME1 LINE L1 -309 5857 5770 1847 158 16 26 chr15 48252383 48252694 -53127827 - AluJo SINE Alu -4 308 1 735 184 31 31 chr15 48252694 48252771 -53127750 - L1ME1 LINE L1 -395 5771 5695 1592 228 103 123 chr15 48252771 48253364 -53127157 - HsTC2 DNA Tc2 -163 1735 1 217 300 133 0 chr15 48253367 48253457 -53127064 - MIR3 SINE MIR -54 154 53 929 146 0 141 chr15 48253563 48253776 -53126745 + AluJo SINE Alu 104 286 -26 185 323 93 57 chr15 48253896 48254249 -53126272 + L2 LINE L2 2611 2976 -338 2243 94 14 0 chr15 48254468 48254756 -53125765 - AluSx SINE Alu -20 292 1 342 348 67 0 chr15 48254807 48254942 -53125579 + L2 LINE L2 3118 3261 -11 485 221 103 69 chr15 48255460 48255664 -53124857 + MIR SINE MIR 2 212 -50 218 269 104 0 chr15 48256399 48256466 -53124055 - MIR SINE MIR -142 120 47 2172 122 7 0 chr15 48256487 48256781 -53123740 - AluSx SINE Alu -16 296 1 706 226 53 11 chr15 48258376 48258566 -53121955 + L1MC1 LINE L1 6066 6263 -70 319 262 107 16 chr15 48258834 48258956 -53121565 - L2 LINE L2 -2 3270 3138 239 243 216 43 chr15 48259165 48259208 -53121313 + L2 LINE L2 2678 2712 -602 1911 154 13 0 chr15 48259208 48259506 -53121015 + AluJb SINE Alu 1 302 -10 239 243 216 43 chr15 48259506 48259717 -53120804 + L2 LINE L2 2712 2976 -338 905 226 6 0 chr15 48260114 48260278 -53120243 + FRAM SINE Alu 1 165 -1 936 196 0 0 chr15 48260983 48261146 -53119375 + FRAM SINE Alu 10 172 -4 1499 234 123 10 chr15 48262322 48262888 -53117633 - MER115 DNA AcHobo -4 689 1 24 0 0 0 chr15 48263734 48263758 -53116763 + AT_rich Low_complexity Low_complexity 1 24 0 2298 96 0 19 chr15 48265020 48265333 -53115188 - AluSc SINE Alu -2 307 1 270 164 55 0 chr15 48265368 48265423 -53115098 + MIR SINE MIR 201 258 -4 * 480 217 116 32 chr15 48265385 48265582 -53114939 - MIR SINE MIR -51 211 3 291 162 95 27 chr15 48266002 48266076 -53114445 - MIR3 SINE MIR -9 199 121 336 233 144 0 chr15 48267052 48267142 -53113379 - L2 LINE L2 0 3272 3170 1274 20 0 0 chr15 48267142 48267289 -53113232 + L1PA3 LINE L1 3678 3824 -2322 6153 24 1 0 chr15 48267289 48267956 -53112565 + L1PA3 LINE L1 5484 6154 -1 22 0 0 0 chr15 48267956 48267978 -53112543 + AT_rich Low_complexity Low_complexity 1 22 0 1102 186 0 0 chr15 48268101 48268284 -53112237 - AluSg/x SINE Alu -1 311 129 21 0 0 0 chr15 48268365 48268386 -53112135 + AT_rich Low_complexity Low_complexity 1 21 0 2670 100 3 3 chr15 48268575 48268934 -53111587 + L1PA3 LINE L1 5796 6154 -1 22 0 0 0 chr15 48268934 48268956 -53111565 + AT_rich Low_complexity Low_complexity 1 22 0 1460 93 0 0 chr15 48269080 48269262 -53111259 - AluSg/x SINE Alu -2 308 127 1286 166 5 23 chr15 48269398 48269615 -53110906 - AluJo SINE Alu -18 294 82 2116 72 0 11 chr15 48269821 48270084 -53110437 - AluY SINE Alu -17 294 35 1685 197 0 3 chr15 48270122 48270417 -53110104 - AluJo SINE Alu -18 294 1 828 282 66 43 chr15 48270460 48270807 -53109714 - L1ME LINE L1 -334 5787 5433 1326 161 113 26 chr15 48271824 48272234 -53108287 - MLT1F LTR MaLR -3 539 69 243 0 0 0 chr15 48272239 48272266 -53108255 + (GA)n Simple_repeat Simple_repeat 1 27 0 198 0 0 0 chr15 48272265 48272287 -53108234 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 357 200 0 0 chr15 48272342 48272422 -53108099 - MIR SINE MIR 0 262 183 309 363 102 64 chr15 48272534 48272895 -53107626 - L2 LINE L2 -48 3224 2850 2301 98 7 0 chr15 48273645 48273940 -53106581 + AluSg SINE Alu 1 297 -13 827 196 0 0 chr15 48274049 48274187 -53106334 + FRAM SINE Alu 1 137 -39 432 0 0 0 chr15 48274188 48274236 -53106285 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 872 272 12 12 chr15 48274399 48274645 -53105876 - MIR SINE MIR -14 248 3 257 276 17 0 chr15 48274864 48274922 -53105599 + L2 LINE L2 3255 3313 0 234 317 0 0 chr15 48275443 48275503 -53105018 - L2 LINE L2 -5 3267 3208 2661 40 0 0 chr15 48275573 48275876 -53104645 + AluY SINE Alu 1 303 -8 3150 110 75 20 chr15 48275876 48276384 -53104137 + L1MA4 LINE L1 5758 6293 -7 28 48 0 0 chr15 48276385 48276427 -53104094 + AT_rich Low_complexity Low_complexity 1 42 0 214 195 0 0 chr15 48276474 48276515 -53104006 + (TA)n Simple_repeat Simple_repeat 1 41 0 361 293 50 0 chr15 48276996 48277095 -53103426 - MIR SINE MIR -119 143 40 36795 96 12 16 chr15 48277303 48283470 -53097051 + L1PA7 LINE L1 11 6153 -1 350 207 35 0 chr15 48283486 48283573 -53096948 - MER33 DNA MER1_type -22 341 252 401 153 0 0 chr15 48283573 48283632 -53096889 - Tigger5 DNA MER2_type -1 2322 2264 247 184 0 0 chr15 48283633 48283671 -53096850 + Tigger5 DNA MER2_type 2283 2320 -3 * 464 177 0 0 chr15 48283671 48283749 -53096772 - Tigger5 DNA MER2_type -2245 78 1 903 163 130 3 chr15 48283749 48283977 -53096544 - MER33 DNA MER1_type -255 69 1 1356 174 18 14 chr15 48284499 48284717 -53095804 + MER20 DNA MER1_type 1 219 0 861 107 8 0 chr15 48284889 48285010 -53095511 + FLAM_C SINE Alu 13 134 -9 649 185 134 25 chr15 48285010 48285167 -53095354 - MER5B DNA MER1_type -1 177 4 227 212 106 59 chr15 48285182 48285352 -53095169 - HAL1b LINE L1 -415 933 756 266 222 32 0 chr15 48285469 48285532 -53094989 - HAL1 LINE L1 -1016 1474 1410 1195 146 3 90 chr15 48285677 48285999 -53094522 + AluSx SINE Alu 6 299 -13 404 280 87 43 chr15 48286000 48286120 -53094401 - L1MEd LINE L1 -1130 1360 1247 567 40 0 0 chr15 48286120 48286194 -53094327 + (TTTC)n Simple_repeat Simple_repeat 4 77 0 404 280 87 43 chr15 48286194 48286426 -53094095 - L1MEd LINE L1 -1243 1247 908 186 133 0 0 chr15 48286472 48286502 -53094019 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 450 236 108 19 chr15 48286744 48286901 -53093620 + L2 LINE L2 3109 3279 -34 3666 145 71 9 chr15 48287064 48287698 -53092823 - MER44D DNA MER2_type -1 704 32 861 141 96 34 chr15 48290546 48290723 -53089798 - MER53 DNA DNA -1 188 1 1875 140 0 4 chr15 48290827 48291105 -53089416 + AluSx SINE Alu 21 297 -15 1682 194 3 7 chr15 48291233 48291561 -53088960 - AluJb SINE Alu 0 312 1 753 231 7 7 chr15 48291612 48291755 -53088766 + FRAM SINE Alu 1 143 -33 249 33 0 0 chr15 48291763 48291793 -53088728 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 423 0 0 0 chr15 48291792 48291839 -53088682 + (CA)n Simple_repeat Simple_repeat 1 47 0 243 0 0 0 chr15 48291843 48291870 -53088651 + (TC)n Simple_repeat Simple_repeat 2 28 0 255 189 0 19 chr15 48291995 48292048 -53088473 + MIR3 SINE MIR 119 170 -38 795 109 0 0 chr15 48292385 48292486 -53088035 + FLAM_A SINE Alu 20 120 -22 33 43 0 0 chr15 48292486 48292533 -53087988 + AT_rich Low_complexity Low_complexity 1 47 0 237 257 86 0 chr15 48293568 48293638 -53086883 + L1MC4a LINE L1 4737 4812 -1334 243 224 19 109 chr15 48293658 48293724 -53086797 + L1P LINE L1 4906 4976 -1170 2383 103 0 0 chr15 48293724 48294036 -53086485 - AluSq SINE Alu -1 312 1 243 224 19 109 chr15 48294036 48294125 -53086396 + L1P LINE L1 4976 5047 -1099 632 315 88 55 chr15 48294335 48294941 -53085580 + L1MC4a LINE L1 5307 5932 -1876 2100 109 3 7 chr15 48295110 48295428 -53085093 - AluSg SINE Alu 0 317 1 2132 120 0 3 chr15 48295516 48295815 -53084706 - AluSx SINE Alu -14 298 1 1396 100 43 5 chr15 48296136 48296346 -53084175 + L1MA3 LINE L1 6087 6304 -1 603 143 109 0 chr15 48296367 48296486 -53084035 + L1MB4 LINE L1 6045 6176 -4 22 0 0 0 chr15 48296513 48296535 -53083986 + AT_rich Low_complexity Low_complexity 1 22 0 230 146 83 21 chr15 48297766 48297814 -53082707 + L1P3 LINE L1 730 780 -5095 1716 210 80 34 chr15 48300737 48301152 -53079369 - MER63B DNA MER1_type -2 434 1 180 111 0 0 chr15 48301300 48301327 -53079194 + (T)n Simple_repeat Simple_repeat 1 27 0 1597 181 10 10 chr15 48301686 48301984 -53078537 + AluSg SINE Alu 11 308 -2 1938 132 7 3 chr15 48302672 48302961 -53077560 + AluJo SINE Alu 7 296 -16 899 216 108 5 chr15 48303109 48303294 -53077227 + MER20 DNA MER1_type 1 204 -15 5021 168 13 16 chr15 48306118 48307088 -53073433 + L1MB7 LINE L1 5208 6178 -6 659 194 71 68 chr15 48307098 48307350 -53073171 - L1MC5 LINE L1 -67 7894 7642 1868 122 0 72 chr15 48307350 48307654 -53072867 + AluSx SINE Alu 3 284 -28 186 71 0 0 chr15 48307657 48307685 -53072836 + (CAA)n Simple_repeat Simple_repeat 1 28 0 1901 108 8 0 chr15 48307685 48307944 -53072577 + AluSp SINE Alu 24 284 -29 258 247 32 21 chr15 48308138 48308231 -53072290 - L1MC5 LINE L1 -491 7470 7377 2229 121 0 0 chr15 48309149 48309447 -53071074 + AluSg SINE Alu 1 298 -12 827 196 0 0 chr15 48309556 48309694 -53070827 + FRAM SINE Alu 1 137 -39 432 0 0 0 chr15 48309695 48309743 -53070778 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 872 272 12 12 chr15 48309906 48310152 -53070369 - MIR SINE MIR -14 248 3 257 276 17 0 chr15 48310371 48310429 -53070092 + L2 LINE L2 3255 3313 0 234 317 0 0 chr15 48310949 48311009 -53069512 - L2 LINE L2 -5 3267 3208 1954 23 0 0 chr15 48311079 48311295 -53069226 + AluYb8 SINE Alu 1 216 -102 21 0 0 0 chr15 48311561 48311582 -53068939 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 48311589 48311610 -53068911 + AT_rich Low_complexity Low_complexity 1 21 0 876 151 6 19 chr15 48311803 48311962 -53068559 - AluSx SINE Alu -155 157 1 1396 100 43 5 chr15 48312283 48312493 -53068028 + L1MA3 LINE L1 6087 6304 -1 603 143 109 0 chr15 48312514 48312633 -53067888 + L1MB4 LINE L1 6045 6176 -4 22 0 0 0 chr15 48312660 48312682 -53067839 + AT_rich Low_complexity Low_complexity 1 22 0 2453 62 0 7 chr15 48314453 48314757 -53065764 - AluY SINE Alu -9 302 1 202 167 0 69 chr15 48314779 48314851 -53065670 + (CACCC)n Simple_repeat Simple_repeat 2 68 0 290 224 0 72 chr15 48315304 48315429 -53065092 - AluSc SINE Alu -165 134 19 1386 145 5 10 chr15 48315429 48315636 -53064885 - AluSx SINE Alu -105 207 2 500 267 48 29 chr15 48315694 48315900 -53064621 - L1MC5 LINE L1 -21 7940 7731 283 284 92 35 chr15 48316133 48316274 -53064247 - HAL1 LINE L1 -2358 149 1 872 250 13 22 chr15 48316603 48316827 -53063694 + AluJo SINE Alu 87 308 -4 488 189 7 88 chr15 48317247 48317395 -53063126 + MER96B DNA MER1_type? 1 136 -281 251 329 51 15 chr15 48317923 48318060 -53062461 + L2 LINE L2 2910 3051 -221 811 161 0 8 chr15 48318947 48319065 -53061456 - AluJo SINE Alu -70 242 126 325 265 147 0 chr15 48319345 48319447 -53061074 - L2 LINE L2 -17 3296 3180 667 245 21 42 chr15 48319738 48319930 -53060591 - MIR SINE MIR -2 260 73 472 296 190 14 chr15 48320327 48320543 -53059978 + MIR SINE MIR 3 256 -6 2166 108 0 26 chr15 48321111 48321418 -53059103 - AluSx SINE Alu -13 299 1 396 219 168 15 chr15 48324516 48324653 -53055868 + MER117 DNA MER1_type 1 158 -39 1740 160 41 3 chr15 48324819 48325112 -53055409 + AluJo SINE Alu 1 304 -8 1603 164 0 53 chr15 48325377 48325658 -53054863 + AluJb SINE Alu 1 266 -46 270 0 0 0 chr15 48325661 48325691 -53054830 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 636 189 85 0 chr15 48326983 48327089 -53053432 + FLAM_C SINE Alu 4 118 -15 2190 175 34 3 chr15 48327202 48327556 -53052965 + MLT1A1 LTR MaLR 1 365 0 193 198 116 70 chr15 48327616 48327702 -53052819 - L3 LINE CR1 -25 1552 1463 295 146 10 15 chr15 48328151 48328214 -53052307 - MER110A LTR ERV1 -4 464 383 4567 230 103 39 chr15 48328383 48329002 -53051519 - L2 LINE L2 -681 2633 2055 2153 113 0 10 chr15 48329002 48329295 -53051226 + AluSx SINE Alu 11 300 -12 4567 230 103 39 chr15 48329295 48330075 -53050446 - L2 LINE L2 -1259 2055 1130 1989 100 37 4 chr15 48330075 48330369 -53050152 - AluSg SINE Alu 0 303 1 4567 230 103 39 chr15 48330369 48330455 -53050066 - L2 LINE L2 -2184 1130 1051 322 228 89 49 chr15 48330457 48330580 -53049941 - L2 LINE L2 -2485 829 702 387 306 127 6 chr15 48331073 48331230 -53049291 + L2 LINE L2 2449 2624 -690 516 257 127 40 chr15 48331263 48331539 -53048982 + L2 LINE L2 3009 3308 -5 249 310 0 60 chr15 48332098 48332198 -53048323 - L2 LINE L2 -41 3231 3138 1857 149 10 7 chr15 48332540 48332842 -53047679 - AluJo SINE Alu -7 305 3 770 145 145 21 chr15 48333009 48333154 -53047367 + FRAM SINE Alu 4 166 -10 193 340 21 21 chr15 48335965 48336062 -53044459 + MIR SINE MIR 20 116 -92 567 271 44 17 chr15 48336077 48336258 -53044263 + MIR SINE MIR 11 196 -66 333 242 57 81 chr15 48336903 48337027 -53043494 + L2 LINE L2 3144 3264 -8 513 276 32 0 chr15 48337113 48337236 -53043285 + MIR3 SINE MIR 82 208 0 2270 107 0 0 chr15 48337436 48337735 -53042786 + AluSq SINE Alu 1 299 -14 222 37 0 0 chr15 48337840 48337867 -53042654 + (TG)n Simple_repeat Simple_repeat 2 28 0 452 290 165 10 chr15 48339422 48339622 -53040899 + MIR SINE MIR 13 243 -19 4027 123 66 83 chr15 48339656 48340454 -53040067 - LTR1 LTR ERV1 0 785 1 298 310 259 25 chr15 48341142 48341381 -53039140 + L3 LINE CR1 208 502 -1075 240 59 0 0 chr15 48341413 48341447 -53039074 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 2202 109 0 10 chr15 48341511 48341813 -53038708 - AluSx SINE Alu -13 299 1 562 349 86 10 chr15 48341833 48342217 -53038304 + L3 LINE CR1 529 941 -636 9475 158 17 121 chr15 48342217 48344111 -53036410 + L1M1 LINE L1 3399 5489 -2076 1112 216 17 4 chr15 48344111 48344347 -53036174 + AluJb SINE Alu 70 308 -4 9475 158 17 121 chr15 48344347 48344489 -53036032 + L1M1 LINE L1 5489 5644 -1921 2000 84 0 15 chr15 48344489 48344750 -53035771 + AluY SINE Alu 36 292 -19 9475 158 17 121 chr15 48344750 48345165 -53035356 + L1M1 LINE L1 5644 5801 -1764 2019 131 0 7 chr15 48345362 48345670 -53034851 + AluSx SINE Alu 1 306 0 1674 123 69 7 chr15 48345682 48345959 -53034562 + L1MA4 LINE L1 6001 6294 -6 2352 110 0 0 chr15 48346131 48346441 -53034080 + AluSx SINE Alu 1 310 -2 26 30 0 0 chr15 48346708 48346741 -53033780 + AT_rich Low_complexity Low_complexity 1 33 0 2369 93 0 0 chr15 48347093 48347394 -53033127 + AluSx SINE Alu 4 304 -8 696 273 98 45 chr15 48347978 48348264 -53032257 - MLT1I LTR MaLR 0 409 109 719 281 208 19 chr15 48348759 48349270 -53031251 - L2 LINE L2 0 3313 2682 2165 93 0 20 chr15 48349270 48349570 -53030951 + AluSx SINE Alu 1 294 -18 719 281 208 19 chr15 48349570 48349627 -53030894 - L2 LINE L2 -631 2682 2637 1745 152 7 55 chr15 48350025 48350335 -53030186 + AluJo SINE Alu 1 295 -17 473 265 20 77 chr15 48350393 48350605 -53029916 + MIR SINE MIR 37 235 -27 2168 132 0 0 chr15 48350772 48351068 -53029453 + AluSg SINE Alu 1 296 -14 21 0 0 0 chr15 48352778 48352799 -53027722 + GC_rich Low_complexity Low_complexity 1 21 0 241 269 0 15 chr15 48353676 48353743 -53026778 + MIR3 SINE MIR 107 172 -36 205 243 314 0 chr15 48354134 48354204 -53026317 - MER5A DNA MER1_type -88 101 10 206 244 0 13 chr15 48354377 48354455 -53026066 + T-rich Low_complexity Low_complexity 4 80 0 2032 119 10 23 chr15 48354586 48354888 -53025633 + AluJo SINE Alu 1 298 -14 261 0 0 0 chr15 48354889 48354918 -53025603 + (TA)n Simple_repeat Simple_repeat 1 29 0 754 208 0 0 chr15 48355237 48355367 -53025154 + FLAM_A SINE Alu 2 131 -2 2947 200 132 36 chr15 48356063 48357234 -53023287 - L1ME2 LINE L1 -1 6163 4887 1832 167 14 0 chr15 48357234 48357521 -53023000 + AluJb SINE Alu 1 291 -21 1845 171 0 19 chr15 48357984 48358294 -53022227 - AluJb SINE Alu -8 304 1 1677 104 33 62 chr15 48358812 48359119 -53021402 - L1MB8 LINE L1 -5 6173 5876 2385 82 0 0 chr15 48359146 48359439 -53021082 + AluSc SINE Alu 17 309 0 883 171 48 0 chr15 48359919 48360065 -53020456 - MER58A DNA MER1_type 0 153 1 1118 140 21 5 chr15 48360934 48361120 -53019401 + MER5A DNA MER1_type 1 189 0 2025 154 0 13 chr15 48361679 48361991 -53018530 + AluJb SINE Alu 1 308 -4 1164 272 134 25 chr15 48362321 48362890 -53017631 + L1ME3 LINE L1 5321 5951 -211 21 71 0 0 chr15 48363338 48363380 -53017141 + AT_rich Low_complexity Low_complexity 1 42 0 235 235 0 15 chr15 48363662 48363730 -53016791 + MER114 LTR ERV 2 68 -580 1972 163 0 3 chr15 48363755 48364056 -53016465 - AluJo SINE Alu -12 300 1 644 187 75 0 chr15 48364593 48364700 -53015821 + FLAM_A SINE Alu 1 115 -18 33 56 0 0 chr15 48364704 48364758 -53015763 + AT_rich Low_complexity Low_complexity 1 54 0 2319 91 0 0 chr15 48366357 48366655 -53013866 + AluSx SINE Alu 1 298 -14 1673 168 56 3 chr15 48367361 48367646 -53012875 - AluJb SINE Alu -12 300 1 2016 122 7 3 chr15 48369699 48369985 -53010536 + AluSx SINE Alu 15 301 -11 471 182 30 20 chr15 48370023 48370122 -53010399 - MER20 DNA MER1_type -3 216 117 2218 215 43 41 chr15 48370138 48370695 -53009826 - MER74B LTR ERVL 0 622 65 1179 175 0 24 chr15 48370697 48370908 -53009613 - AluJo SINE Alu -21 291 86 504 191 22 0 chr15 48370920 48371009 -53009512 - MER20 DNA MER1_type -128 91 1 334 258 106 73 chr15 48371009 48371160 -53009361 - MIR3 SINE MIR -48 160 5 21 0 0 0 chr15 48371596 48371617 -53008904 + AT_rich Low_complexity Low_complexity 1 21 0 1815 161 0 41 chr15 48371874 48372190 -53008331 + AluJo SINE Alu 1 303 -9 530 367 126 25 chr15 48372440 48372846 -53007675 - L2 LINE L2 -5 3267 2821 225 355 78 35 chr15 48372891 48373032 -53007489 - L2 LINE L2 -679 2635 2489 1260 81 55 150 chr15 48374018 48374291 -53006230 - L1PA13 LINE L1 -19 6144 5898 1979 143 7 0 chr15 48374392 48374686 -53005835 + AluSx SINE Alu 2 297 -15 2134 114 0 0 chr15 48375627 48375939 -53004582 - AluSx SINE Alu 0 312 1 302 215 0 15 chr15 48376225 48376290 -53004231 - MLT1J2 LTR MaLR -326 124 61 1891 161 97 49 chr15 48376461 48376851 -53003670 - MLT2D LTR ERVL -4 410 2 652 213 50 69 chr15 48377693 48377812 -53002709 - L1ME3A LINE L1 0 6162 6042 2219 92 7 7 chr15 48377812 48378105 -53002416 + AluSx SINE Alu 1 293 -19 652 213 50 69 chr15 48378105 48378248 -53002273 - L1ME3A LINE L1 -120 6042 5908 863 150 81 62 chr15 48378301 48378461 -53002060 - FRAM SINE Alu 0 166 4 617 144 8 34 chr15 48379295 48379413 -53001108 - Charlie2b DNA MER1_type -795 1987 1873 289 136 0 0 chr15 48379411 48379455 -53001066 - AluSq SINE Alu -5 295 252 * 1281 97 6 0 chr15 48379456 48379621 -53000900 - AluSq SINE Alu -147 166 1 1009 209 193 54 chr15 48379627 48380129 -53000392 - Charlie2b DNA MER1_type -920 1862 1291 763 273 61 34 chr15 48380124 48380417 -53000104 - Charlie2b DNA MER1_type -1910 872 572 * 545 85 24 0 chr15 48381138 48381220 -52999301 - AluS SINE Alu -227 85 2 1999 133 0 14 chr15 48381574 48381886 -52998635 + AluSx SINE Alu 1 308 0 218 209 0 0 chr15 48381915 48381958 -52998563 + A-rich Low_complexity Low_complexity 2 44 0 1839 146 34 0 chr15 48381974 48382269 -52998252 + AluSx SINE Alu 5 309 -3 2255 101 3 22 chr15 48382293 48382610 -52997911 + AluSq SINE Alu 3 313 0 314 301 20 20 chr15 48382613 48382759 -52997762 + L1MEc LINE L1 1455 1600 -4796 2164 203 20 81 chr15 48382807 48383397 -52997124 - MLT2B3 LTR ERVL 0 554 1 410 223 33 107 chr15 48383397 48383467 -52997054 + L1MEc LINE L1 1595 1669 -4727 577 165 74 50 chr15 48383467 48383588 -52996933 + FLAM_A SINE Alu 1 124 -9 2369 89 3 3 chr15 48383591 48383895 -52996626 + AluSp SINE Alu 1 304 -9 410 223 33 107 chr15 48383895 48384062 -52996459 + L1MEc LINE L1 1671 1818 -4578 2268 103 7 7 chr15 48384086 48384396 -52996125 + AluSx SINE Alu 1 310 -2 2057 109 41 7 chr15 48384402 48384695 -52995826 + AluSg SINE Alu 1 303 -7 500 156 10 0 chr15 48384709 48384805 -52995716 - L1 LINE L1 -847 5299 5203 2420 98 0 0 chr15 48384805 48385110 -52995411 - AluSg SINE Alu -5 305 1 1830 133 54 0 chr15 48385119 48385398 -52995123 - AluSx SINE Alu -18 294 1 314 148 0 0 chr15 48385404 48385458 -52995063 + LTR37B LTR ERV1 237 290 -178 2124 121 3 3 chr15 48385461 48385758 -52994763 - AluSx SINE Alu -15 297 1 280 206 55 0 chr15 48385759 48385832 -52994689 - L1 LINE L1 -951 5195 5119 * 1961 234 44 31 chr15 48385829 48386172 -52994349 - L1M4c LINE L1 -4606 2038 1701 2205 131 0 0 chr15 48386172 48386469 -52994052 - AluSx SINE Alu -15 297 1 1961 234 44 31 chr15 48386469 48386719 -52993802 - L1M4c LINE L1 -4943 1701 1456 2420 103 0 0 chr15 48386719 48387031 -52993490 - AluSx SINE Alu 0 312 1 1961 234 44 31 chr15 48387031 48387133 -52993388 - L1M4c LINE L1 -5188 1456 1 2735 38 6 26 chr15 48389098 48389440 -52991081 - L1PA6 LINE L1 0 6154 5820 2658 37 0 0 chr15 48389440 48389734 -52990787 - AluY SINE Alu -17 294 1 2207 120 13 0 chr15 48389739 48390039 -52990482 - AluSx SINE Alu -8 304 1 2125 118 10 0 chr15 48390374 48390663 -52989858 - AluSx SINE Alu -19 293 2 1377 220 46 21 chr15 48390688 48391090 -52989431 - L1ME1 LINE L1 -51 6115 5763 2037 137 3 13 chr15 48391477 48391777 -52988744 - AluSx SINE Alu -13 299 3 190 302 32 0 chr15 48392764 48392827 -52987694 + MIR3 SINE MIR 137 201 -7 2482 72 3 7 chr15 48393576 48393882 -52986639 + AluSp SINE Alu 1 305 -8 21 57 0 0 chr15 48393932 48393967 -52986554 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr15 48394634 48394665 -52985856 + AT_rich Low_complexity Low_complexity 1 31 0 803 168 8 0 chr15 48394685 48394816 -52985705 - FLAM_A SINE Alu -1 132 1 258 315 46 0 chr15 48395061 48395169 -52985352 - L1MEd LINE L1 -5737 382 270 244 210 49 12 chr15 48395250 48395331 -52985190 - L1MEd LINE L1 -6000 119 36 2195 122 0 13 chr15 48395659 48395970 -52984551 - AluSx SINE Alu -5 307 1 252 279 73 67 chr15 48397279 48397444 -52983077 + MIR SINE MIR 80 245 -17 1989 125 10 7 chr15 48398952 48399241 -52981280 - AluSx SINE Alu -22 290 1 2386 94 3 0 chr15 48399797 48400106 -52980415 + AluSq SINE Alu 1 310 -3 206 313 45 34 chr15 48400692 48400871 -52979650 - L2 LINE L2 -166 3106 2926 2193 106 0 13 chr15 48400975 48401277 -52979244 - AluSx SINE Alu -14 298 1 1843 164 0 7 chr15 48401282 48401581 -52978940 - AluJo SINE Alu -15 297 1 1843 136 9 67 chr15 48401696 48402026 -52978495 - AluSx SINE Alu -1 311 1 666 185 138 0 chr15 48402206 48402336 -52978185 + MER2 DNA MER2_type 1 148 -197 1010 178 178 4 chr15 48402353 48402427 -52978094 + AluJb SINE Alu 30 90 -222 225 0 0 0 chr15 48402427 48402452 -52978069 + (CAA)n Simple_repeat Simple_repeat 3 27 0 * 261 0 0 0 chr15 48402451 48402480 -52978041 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1010 178 178 4 chr15 48402452 48402630 -52977891 + AluJb SINE Alu 90 293 -19 242 26 184 0 chr15 48402633 48402671 -52977850 + MER2 DNA MER2_type 142 186 -159 2139 96 3 55 chr15 48402671 48402983 -52977538 + AluSx SINE Alu 1 296 -16 251 224 60 0 chr15 48403687 48403754 -52976767 - MIR SINE MIR -89 173 103 2178 107 13 3 chr15 48404930 48405228 -52975293 - AluSx SINE Alu -11 301 1 2262 123 7 0 chr15 48405228 48405536 -52974985 - AluSx SINE Alu -2 310 1 2061 109 0 0 chr15 48405672 48405939 -52974582 - AluSx SINE Alu -5 307 41 695 150 8 33 chr15 48406642 48406762 -52973759 - FLAM_A SINE Alu -8 134 18 243 104 62 21 chr15 48406840 48406888 -52973633 - L1M4c LINE L1 -3900 2484 2435 * 1369 173 146 9 chr15 48406859 48407201 -52973320 - L1MB5 LINE L1 -96 6314 5926 852 236 20 39 chr15 48407206 48407460 -52973061 + AluSq SINE Alu 51 299 -14 447 292 30 39 chr15 48407971 48408204 -52972317 - L1ME4a LINE L1 -2 6119 5889 1953 111 251 0 chr15 48408204 48408546 -52971975 + MSTA LTR MaLR 1 428 0 2507 77 0 0 chr15 48408558 48408869 -52971652 - AluY SINE Alu 0 311 1 2277 120 7 0 chr15 48408872 48409173 -52971348 - AluSx SINE Alu -9 303 1 1488 193 0 0 chr15 48409186 48409450 -52971071 - AluJo SINE Alu -13 299 36 933 245 20 0 chr15 48409696 48409896 -52970625 - MER63A DNA MER1_type -6 204 1 1947 78 28 100 chr15 48409942 48410263 -52970258 + AluYb8 SINE Alu 1 298 -20 481 282 57 30 chr15 48410285 48410547 -52969974 - L1ME4a LINE L1 -216 5905 5637 542 146 0 22 chr15 48410552 48410641 -52969880 - FRAM SINE Alu -15 161 75 251 305 37 0 chr15 48410641 48410723 -52969798 - L1ME4a LINE L1 -481 5640 5556 26 30 0 0 chr15 48410724 48410757 -52969764 + AT_rich Low_complexity Low_complexity 1 33 0 1648 157 15 4 chr15 48410757 48411019 -52969502 - AluJo SINE Alu -39 273 9 2200 85 27 0 chr15 48411057 48411351 -52969170 - AluSp SINE Alu -11 302 1 204 114 0 29 chr15 48412029 48412064 -52968457 + (TG)n Simple_repeat Simple_repeat 2 35 0 317 220 44 90 chr15 48413042 48413054 -52967467 - L1 LINE L1 -1123 5023 5012 2456 74 7 3 chr15 48413054 48413364 -52967157 - AluY SINE Alu 0 311 1 317 220 44 90 chr15 48413364 48413500 -52967021 - L1 LINE L1 -1134 5012 4882 1416 214 22 26 chr15 48413601 48413914 -52966607 - AluJo SINE Alu 0 312 1 2196 151 19 3 chr15 48414903 48415273 -52965248 - L1MB7 LINE L1 -16 6168 5793 1674 190 51 3 chr15 48415274 48415606 -52964915 - L1MB7 LINE L1 -437 5747 5400 360 0 0 0 chr15 48415632 48415672 -52964849 + (TG)n Simple_repeat Simple_repeat 2 41 0 1126 118 6 0 chr15 48416527 48416696 -52963825 - AluSc SINE Alu -8 301 132 2343 86 0 10 chr15 48416696 48416997 -52963524 - AluY SINE Alu -13 298 1 611 224 68 5 chr15 48417025 48417217 -52963304 - L1MEc LINE L1 -3661 2554 2351 228 35 0 0 chr15 48417232 48417261 -52963260 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1420 185 40 22 chr15 48417266 48417542 -52962979 - AluJo SINE Alu -30 282 2 2527 64 0 0 chr15 48417544 48417840 -52962681 - AluY SINE Alu -15 296 1 1554 185 45 7 chr15 48417873 48418160 -52962361 + AluJo SINE Alu 3 300 -12 3418 212 30 33 chr15 48418177 48418477 -52962044 - L1MEc LINE L1 -5426 970 671 2379 80 7 7 chr15 48418477 48418776 -52961745 + AluSq SINE Alu 1 299 -14 3418 212 30 33 chr15 48418776 48419328 -52961193 - L1MEc LINE L1 -5725 671 120 702 194 8 8 chr15 48419330 48419456 -52961065 + AluJo SINE Alu 2 130 -182 459 0 0 0 chr15 48419456 48419507 -52961014 + (TG)n Simple_repeat Simple_repeat 2 52 0 413 137 27 0 chr15 48419514 48419587 -52960934 - L1MEc LINE L1 -6272 124 50 205 203 0 72 chr15 48420767 48420836 -52959685 - MER5B DNA MER1_type -1 177 114 405 0 0 0 chr15 48420957 48421002 -52959519 + (CA)n Simple_repeat Simple_repeat 1 45 0 4385 195 46 66 chr15 48421425 48422216 -52958305 - L1MB7 LINE L1 -10 6174 5368 695 239 0 0 chr15 48422216 48422346 -52958175 - FLAM_A SINE Alu -3 130 1 4385 195 46 66 chr15 48422346 48422659 -52957862 - L1MB7 LINE L1 -816 5368 5050 2165 90 0 7 chr15 48422659 48422936 -52957585 - AluSp SINE Alu 0 313 39 4385 195 46 66 chr15 48422936 48422995 -52957526 - L1MB7 LINE L1 -1134 5050 4991 2390 97 0 0 chr15 48422995 48423305 -52957216 - AluSx SINE Alu -2 310 1 4385 195 46 66 chr15 48423305 48423442 -52957079 - L1MB7 LINE L1 -1193 4991 4853 1540 124 154 11 chr15 48423442 48423709 -52956812 + AluSg1 SINE Alu 1 305 -4 4385 195 46 66 chr15 48423709 48424058 -52956463 - L1MB7 LINE L1 -1331 4853 4566 573 185 67 0 chr15 48424639 48424774 -52955747 - L1MA8 LINE L1 -1 6290 6147 656 251 11 17 chr15 48424814 48424993 -52955528 + MER5B DNA MER1_type 1 178 0 798 251 116 43 chr15 48425678 48425740 -52954781 + MLT1L LTR MaLR 219 275 -340 767 42 42 0 chr15 48425740 48425836 -52954685 + HY3 scRNA scRNA 1 100 -1 798 251 116 43 chr15 48425836 48426100 -52954421 + MLT1L LTR MaLR 275 569 -46 311 176 15 15 chr15 48426122 48426190 -52954331 + MER5A DNA MER1_type 37 104 -85 10391 66 11 37 chr15 48426470 48427892 -52952629 - SVA Other Other 0 1386 2 225 0 0 0 chr15 48427899 48427924 -52952597 + (GGGAGA)n Simple_repeat Simple_repeat 3 27 0 2345 106 0 7 chr15 48428121 48428423 -52952098 + AluSx SINE Alu 1 300 -12 1621 173 32 0 chr15 48430775 48431058 -52949463 + AluJo SINE Alu 1 292 -20 256 238 41 115 chr15 48431080 48431349 -52949172 - L1ME4a LINE L1 -11 6110 5862 1943 131 3 26 chr15 48431354 48431660 -52948861 - AluSx SINE Alu -13 299 1 288 303 90 37 chr15 48431665 48431853 -52948668 - MIR SINE MIR -15 247 50 1172 220 84 85 chr15 48431978 48432636 -52947885 - L1MC5 LINE L1 -33 7928 7272 466 342 161 6 chr15 48432907 48433255 -52947266 - L3 LINE CR1 -50 1527 1126 2225 126 3 0 chr15 48434196 48434506 -52946015 + AluSx SINE Alu 1 311 -1 2401 68 3 0 chr15 48434667 48434960 -52945561 + AluY SINE Alu 1 294 -17 862 142 0 57 chr15 48435452 48435593 -52944928 + FLAM_A SINE Alu 1 133 0 2170 206 113 8 chr15 48435597 48436103 -52944418 - L1ME1 LINE L1 -4 6162 5604 2311 102 0 10 chr15 48436399 48436702 -52943819 - AluSx SINE Alu -12 300 1 21 0 0 0 chr15 48436702 48436723 -52943798 + AT_rich Low_complexity Low_complexity 1 21 0 2137 135 3 0 chr15 48437009 48437312 -52943209 + AluSq SINE Alu 1 304 -9 236 248 165 9 chr15 48437902 48437932 -52942589 - L1MB1 LINE L1 -201 5967 5938 366 295 22 0 chr15 48437932 48438071 -52942450 - L1MC4a LINE L1 -1884 5924 5783 815 160 45 0 chr15 48438079 48438235 -52942286 - L1 LINE L1 -2209 3937 3775 2672 252 102 45 chr15 48438237 48438665 -52941856 + L2 LINE L2 2009 2411 -902 2467 77 0 0 chr15 48438665 48438964 -52941557 - AluSg SINE Alu -10 300 2 2672 252 102 45 chr15 48438964 48439760 -52940761 + L2 LINE L2 2411 3299 -14 321 313 20 0 chr15 48439980 48440079 -52940442 + CT-rich Low_complexity Low_complexity 2 102 0 2238 125 0 0 chr15 48440566 48440871 -52939650 + AluJb SINE Alu 1 305 -7 285 146 42 0 chr15 48440882 48440930 -52939591 - MER2 DNA MER2_type -29 316 267 1103 162 0 0 chr15 48441013 48441186 -52939335 - MER2 DNA MER2_type -172 173 1 1688 116 4 4 chr15 48441450 48441682 -52938839 + AluSx SINE Alu 58 289 -23 374 161 145 57 chr15 48441839 48441963 -52938558 - L1ME4a LINE L1 -1 6120 5986 2315 103 7 0 chr15 48441968 48442269 -52938252 - AluSq SINE Alu -10 303 1 1873 181 0 3 chr15 48442467 48442771 -52937750 - AluJb SINE Alu -9 303 1 550 147 32 26 chr15 48443001 48443157 -52937364 + CT-rich Low_complexity Low_complexity 1 157 0 1701 169 48 0 chr15 48443157 48443447 -52937074 - AluJb SINE Alu -8 304 1 243 281 0 24 chr15 48443448 48443530 -52936991 + MIR SINE MIR 118 197 -65 293 128 0 0 chr15 48443534 48443581 -52936940 + MER46C DNA MER2_type 4 50 -288 670 219 143 9 chr15 48443644 48443854 -52936667 + MER46C DNA MER2_type 35 272 -66 2046 136 0 3 chr15 48443854 48444149 -52936372 + AluSx SINE Alu 3 296 -16 315 240 90 50 chr15 48444153 48444253 -52936268 - HAL1 LINE L1 -694 1813 1710 419 235 143 37 chr15 48444286 48444450 -52936071 - MLT1F LTR MaLR -2 591 446 1783 184 3 7 chr15 48444450 48444760 -52935761 + AluJo SINE Alu 1 309 -3 419 235 143 37 chr15 48444760 48444910 -52935611 - MLT1F LTR MaLR -147 446 216 2006 111 7 4 chr15 48444984 48445263 -52935258 + AluSx SINE Alu 1 280 -32 682 209 36 61 chr15 48445289 48445319 -52935202 - HAL1 LINE L1 -919 1588 1559 2080 118 3 10 chr15 48445319 48445624 -52934897 - AluSg SINE Alu -7 303 1 682 209 36 61 chr15 48445624 48445789 -52934732 - HAL1 LINE L1 -948 1559 1398 2399 82 0 3 chr15 48445997 48446302 -52934219 - AluY SINE Alu -7 304 1 2429 66 0 0 chr15 48446737 48447026 -52933495 - AluSc SINE Alu -20 289 1 2100 114 4 0 chr15 48447270 48447550 -52932971 + AluSx SINE Alu 1 281 -31 2328 62 10 20 chr15 48447606 48447912 -52932609 - AluY SINE Alu -8 303 1 795 203 0 0 chr15 48448027 48448145 -52932376 + FLAM_C SINE Alu 3 120 -23 28 48 0 0 chr15 48448145 48448187 -52932334 + AT_rich Low_complexity Low_complexity 1 42 0 2234 113 3 25 chr15 48448335 48448653 -52931868 + AluSq SINE Alu 1 311 -2 832 190 25 0 chr15 48448778 48448936 -52931585 + FRAM SINE Alu 1 159 -17 259 247 0 0 chr15 48449301 48449358 -52931163 - FAM SINE Alu -7 168 123 781 221 51 41 chr15 48449549 48449825 -52930696 - L1MC/D LINE L1 -535 5639 5400 360 0 0 0 chr15 48449851 48449891 -52930630 + (TG)n Simple_repeat Simple_repeat 2 41 0 2180 93 3 13 chr15 48450746 48450916 -52929605 - AluSc SINE Alu -8 301 134 2679 42 0 6 chr15 48450916 48451229 -52929292 - AluY SINE Alu 0 311 1 2180 93 3 13 chr15 48451229 48451360 -52929161 - AluSc SINE Alu -175 134 3 391 278 107 21 chr15 48452176 48452363 -52928158 - MIR SINE MIR -35 227 25 326 228 28 110 chr15 48452558 48452703 -52927818 + L2 LINE L2 3181 3313 0 2103 106 39 0 chr15 48453494 48453777 -52926744 + AluSx SINE Alu 1 294 -18 1997 17 0 30 chr15 48454033 48454266 -52926255 + AluYb8 SINE Alu 93 318 0 2448 60 13 10 chr15 48455020 48455322 -52925199 + AluSp SINE Alu 1 303 -10 731 133 9 0 chr15 48455482 48455587 -52924934 + U6 snRNA snRNA 2 107 0 801 146 0 51 chr15 48456574 48456711 -52923810 + AluSq/x SINE Alu 2 131 -182 2201 108 0 3 chr15 48458573 48458879 -52921642 + AluSx SINE Alu 1 305 0 211 65 43 22 chr15 48459033 48459079 -52921442 + (GTTTG)n Simple_repeat Simple_repeat 2 48 0 266 313 10 10 chr15 48459180 48459279 -52921242 + CT-rich Low_complexity Low_complexity 3 101 0 198 0 0 0 chr15 48459478 48459500 -52921021 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 29 20 0 39 chr15 48460397 48460427 -52920094 + AT_rich Low_complexity Low_complexity 1 30 -19 2452 68 3 0 chr15 48460427 48460722 -52919799 + AluSp SINE Alu 1 296 -17 29 20 0 39 chr15 48460722 48460742 -52919779 + AT_rich Low_complexity Low_complexity 30 49 0 2179 108 10 3 chr15 48461256 48461553 -52918968 - AluSx SINE Alu -13 299 1 1082 157 27 11 chr15 48461606 48461791 -52918730 + MER46A DNA MER2_type 49 236 0 22 35 0 0 chr15 48461863 48461892 -52918629 + AT_rich Low_complexity Low_complexity 1 29 0 1890 172 0 7 chr15 48462012 48462314 -52918207 + AluJb SINE Alu 1 300 -12 1409 192 52 4 chr15 48462317 48462588 -52917933 + AluJo SINE Alu 23 306 -6 2149 118 3 3 chr15 48462663 48462952 -52917569 + AluSx SINE Alu 1 289 -23 1547 121 152 4 chr15 48463014 48463278 -52917243 - AluYb8 SINE Alu -15 303 1 1748 197 58 44 chr15 48464089 48464454 -52916067 + MLT1A2 LTR MaLR 1 370 -4 330 183 12 37 chr15 48464465 48464547 -52915974 + MER116 DNA Mariner 1 80 0 2383 108 0 0 chr15 48464617 48464924 -52915597 + AluSx SINE Alu 1 307 -5 2179 130 7 0 chr15 48465060 48465361 -52915160 + AluSx SINE Alu 1 303 -9 2164 107 13 3 chr15 48465361 48465660 -52914861 + AluSx SINE Alu 1 302 -10 271 224 60 0 chr15 48466836 48466903 -52913618 + MIR SINE MIR 103 173 -89 2153 97 3 51 chr15 48467609 48467920 -52912601 - AluSx SINE Alu -16 296 1 247 26 184 0 chr15 48467920 48467958 -52912563 - MER2 DNA MER2_type -159 186 142 1135 167 117 13 chr15 48467961 48468110 -52912411 - AluJb SINE Alu -19 293 108 486 0 0 0 chr15 48468110 48468164 -52912357 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 1135 167 117 13 chr15 48468164 48468253 -52912268 - AluJb SINE Alu -204 108 30 671 185 138 0 chr15 48468270 48468400 -52912121 - MER2 DNA MER2_type -197 148 1 195 214 314 0 chr15 48468460 48468530 -52911991 + L2 LINE L2 3181 3272 0 1823 140 9 61 chr15 48468580 48468908 -52911613 + AluSx SINE Alu 1 311 -1 1807 160 0 10 chr15 48469023 48469323 -52911198 + AluJo SINE Alu 1 297 -15 2189 103 0 13 chr15 48469328 48469630 -52910891 + AluSx SINE Alu 1 298 -14 285 298 44 73 chr15 48469734 48469982 -52910539 + L2 LINE L2 2926 3166 -106 2342 97 3 0 chr15 48470498 48470807 -52909714 - AluSq SINE Alu -3 310 1 1961 125 10 7 chr15 48471363 48471652 -52908869 + AluSx SINE Alu 1 290 -22 294 279 73 67 chr15 48473159 48473324 -52907197 - MIR SINE MIR -17 245 80 2188 122 0 13 chr15 48474633 48474945 -52905576 + AluSx SINE Alu 1 308 -4 249 210 49 12 chr15 48475273 48475354 -52905167 + L1MEd LINE L1 36 119 -6000 244 324 46 0 chr15 48475435 48475543 -52904978 + L1MEd LINE L1 270 382 -5737 853 168 8 0 chr15 48475788 48475919 -52904602 + FLAM_A SINE Alu 1 132 -1 25 31 0 0 chr15 48475939 48475971 -52904550 + AT_rich Low_complexity Low_complexity 1 32 0 2201 125 0 0 chr15 48476976 48477273 -52903248 - AluSx SINE Alu -15 297 1 2210 107 0 3 chr15 48477835 48478126 -52902395 - AluSx SINE Alu -20 292 3 201 159 0 0 chr15 48478278 48478322 -52902199 + A-rich Low_complexity Low_complexity 1 44 0 38 22 0 0 chr15 48478520 48478565 -52901956 + AT_rich Low_complexity Low_complexity 1 45 0 1906 211 97 33 chr15 48479104 48479591 -52900930 + MLT1F LTR MaLR 1 518 -24 2238 138 0 0 chr15 48479599 48479911 -52900610 - AluSx SINE Alu 0 312 1 1878 110 99 0 chr15 48480140 48480412 -52900109 + AluSx SINE Alu 1 299 -13 2142 122 0 0 chr15 48480798 48481110 -52899411 - AluSx SINE Alu 0 312 1 314 216 0 68 chr15 48481351 48481439 -52899082 + L1MC4 LINE L1 6443 6524 -1518 2161 309 79 18 chr15 48481439 48481675 -52898846 - ERVL LTR ERVL -2154 3610 3390 2323 69 3 10 chr15 48481675 48481980 -52898541 + AluY SINE Alu 1 303 -8 2161 309 79 18 chr15 48481980 48482641 -52897880 - ERVL LTR ERVL -2374 3390 2658 755 83 0 0 chr15 48482776 48482872 -52897649 - AluS SINE Alu -215 97 2 293 42 83 0 chr15 48482939 48482987 -52897534 + AluY SINE Alu 251 302 0 324 240 87 10 chr15 48483005 48483109 -52897412 - ERVL LTR ERVL -3263 2501 2390 589 115 0 0 chr15 48483109 48483187 -52897334 + AluS SINE Alu 2 79 -233 293 42 83 0 chr15 48483332 48483380 -52897141 + AluY SINE Alu 249 300 0 1676 251 53 69 chr15 48483380 48483483 -52897038 - ERVL LTR ERVL -3263 2501 2398 1972 134 0 7 chr15 48483483 48483781 -52896740 + AluSx SINE Alu 1 296 -16 1676 251 53 69 chr15 48483781 48483802 -52896719 - ERVL LTR ERVL -3366 2398 2378 186 118 0 0 chr15 48483802 48483836 -52896685 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 1676 251 53 69 chr15 48483836 48484292 -52896229 - ERVL LTR ERVL -3386 2378 1929 1061 225 152 23 chr15 48484434 48485063 -52895458 - LTR50 LTR ERVL -6 789 1 299 263 40 0 chr15 48485419 48485495 -52895026 + MLT1C LTR MaLR 1 79 -488 2084 99 10 3 chr15 48485497 48485790 -52894731 - AluSx SINE Alu -17 295 1 351 93 19 130 chr15 48485792 48485900 -52894621 - MER96B DNA MER1_type? -238 179 84 984 220 83 42 chr15 48485952 48486289 -52894232 + MLT1C LTR MaLR 50 400 -67 1167 86 0 3 chr15 48486423 48486645 -52893876 - AluSc SINE Alu -15 294 2 2165 114 0 13 chr15 48487553 48487869 -52892652 + AluSx SINE Alu 1 312 0 2308 79 0 3 chr15 48488624 48488929 -52891592 + AluSg SINE Alu 1 304 -6 2203 92 0 7 chr15 48488929 48489224 -52891297 + AluSg SINE Alu 1 293 -17 248 315 94 31 chr15 48489872 48489999 -52890522 - MIR SINE MIR -74 188 54 2171 111 0 13 chr15 48490687 48491003 -52889518 + AluSx SINE Alu 1 312 0 807 151 0 0 chr15 48491019 48491145 -52889376 + AluJo/FLAM SINE Alu 2 127 -185 1659 128 0 44 chr15 48491145 48491466 -52889055 + AluSg SINE Alu 1 307 -3 2167 112 0 3 chr15 48491480 48491785 -52888736 + AluSg SINE Alu 1 304 -6 1594 250 69 22 chr15 48491787 48492382 -52888139 + L1M4c LINE L1 976 1598 -4786 32 0 0 0 chr15 48492584 48492616 -52887905 + AT_rich Low_complexity Low_complexity 1 32 0 292 282 81 48 chr15 48492902 48493026 -52887495 - MIR SINE MIR -132 130 3 302 221 106 10 chr15 48493087 48493191 -52887330 + L2 LINE L2 2669 2782 -532 835 143 0 0 chr15 48493203 48493329 -52887192 + AluJb SINE Alu 8 133 -179 764 267 90 33 chr15 48493337 48493755 -52886766 + L2 LINE L2 2771 3207 -106 2256 99 0 0 chr15 48493821 48494123 -52886398 + AluY SINE Alu 1 302 -9 38 81 0 0 chr15 48494163 48494250 -52886271 + AT_rich Low_complexity Low_complexity 1 87 0 2037 92 7 30 chr15 48494270 48494565 -52885956 - AluSp SINE Alu -25 288 1 1561 168 56 7 chr15 48494624 48494910 -52885611 - AluJo SINE Alu -12 300 1 205 307 37 90 chr15 48495105 48495294 -52885227 + L2 LINE L2 2986 3164 -108 1690 157 0 30 chr15 48495489 48495789 -52884732 - AluJo SINE Alu -17 295 5 26 0 0 0 chr15 48496421 48496447 -52884074 + AT_rich Low_complexity Low_complexity 1 26 0 185 195 171 0 chr15 48496648 48496689 -52883832 - L2 LINE L2 -15 3257 3210 * 578 294 15 30 chr15 48496657 48496854 -52883667 - MIR SINE MIR -25 237 44 597 321 67 22 chr15 48496947 48497190 -52883331 + MIR SINE MIR 4 260 -2 2474 63 0 0 chr15 48497486 48497785 -52882736 + AluSx SINE Alu 1 299 -13 382 0 0 0 chr15 48500351 48500395 -52880126 + MADE1 DNA Mariner 3 46 -34 432 256 80 7 chr15 48500415 48500552 -52879969 - MIR SINE MIR -105 157 11 1886 151 3 0 chr15 48501410 48501714 -52878807 + AluSg SINE Alu 1 305 -5 1550 145 24 24 chr15 48502202 48502491 -52878030 - AluJo SINE Alu -23 289 1 226 318 16 0 chr15 48502854 48502917 -52877604 + MIR SINE MIR 72 135 -127 2176 97 0 0 chr15 48503107 48503397 -52877124 + AluSx SINE Alu 1 290 -22 1457 204 3 10 chr15 48503539 48503833 -52876688 + AluJo SINE Alu 1 292 -20 21 57 0 0 chr15 48504281 48504316 -52876205 + AT_rich Low_complexity Low_complexity 1 35 0 2323 75 3 7 chr15 48504366 48504672 -52875849 - AluSp SINE Alu -8 305 1 219 302 32 0 chr15 48505421 48505484 -52875037 - MIR3 SINE MIR -7 201 137 1472 104 0 0 chr15 48506471 48506664 -52873857 + AluSq SINE Alu 3 195 -118 297 0 0 0 chr15 48506721 48506754 -52873767 + (TGG)n Simple_repeat Simple_repeat 2 34 0 1656 78 118 16 chr15 48507090 48507345 -52873176 + AluSx SINE Alu 18 298 -14 971 110 0 0 chr15 48507378 48507514 -52873007 + AluSq/x SINE Alu 1 136 -177 544 307 63 44 chr15 48507549 48507819 -52872702 + L3 LINE CR1 1302 1576 -1 401 202 30 109 chr15 48507976 48508243 -52872278 + MER82 DNA MER2_type 23 268 -385 1469 167 18 25 chr15 48508407 48508709 -52871812 + AluJo SINE Alu 12 311 0 746 211 51 12 chr15 48508715 48509047 -52871474 + L1M4 LINE L1 3359 3793 -2353 609 143 107 8 chr15 48509018 48509165 -52871356 + L1MB8 LINE L1 5751 5895 -283 * 201 74 0 0 chr15 48509693 48509720 -52870801 + (T)n Simple_repeat Simple_repeat 1 27 0 344 248 57 45 chr15 48509843 48510000 -52870521 - L1ME LINE L1 -508 5662 5504 1545 157 150 30 chr15 48510885 48511218 -52869303 - L1M4 LINE L1 -362 5822 5530 2137 108 0 10 chr15 48511218 48511523 -52868998 - AluSx SINE Alu -10 302 1 1545 157 150 30 chr15 48511523 48511733 -52868788 - L1M4 LINE L1 -654 5530 5172 339 25 0 0 chr15 48511737 48511777 -52868744 + (ATTG)n Simple_repeat Simple_repeat 2 41 0 554 203 28 14 chr15 48512375 48512518 -52868003 + L1MB8 LINE L1 6034 6178 0 1750 190 88 14 chr15 48512518 48512870 -52867651 + MLT1F LTR MaLR 156 533 -9 948 131 25 6 chr15 48513022 48513182 -52867339 - AluSg/x SINE Alu -12 300 138 241 296 18 59 chr15 48513479 48513648 -52866873 + GA-rich Low_complexity Low_complexity 3 164 0 342 247 105 27 chr15 48514117 48514336 -52866185 + L1ME4a LINE L1 5885 6120 -1 1965 117 3 45 chr15 48514441 48514749 -52865772 + AluSx SINE Alu 1 295 -17 372 111 0 0 chr15 48514961 48515024 -52865497 + (C)n Simple_repeat Simple_repeat 1 63 0 568 184 0 10 chr15 48515781 48515879 -52864642 + AluSg/x SINE Alu 199 295 -14 1397 166 58 98 chr15 48515879 48516175 -52864346 - L1M4 LINE L1 -479 5695 5389 1828 121 11 0 chr15 48516175 48516448 -52864073 - AluSx SINE Alu -7 305 30 1397 166 58 98 chr15 48516448 48516465 -52864056 - L1M4 LINE L1 -785 5389 5373 1540 119 0 0 chr15 48516465 48516684 -52863837 - AluSq SINE Alu -94 219 1 1397 166 58 98 chr15 48516684 48516766 -52863755 - L1M4 LINE L1 -801 5373 5315 181 351 26 0 chr15 48516972 48517049 -52863472 + MIR SINE MIR 94 172 -90 29 70 0 0 chr15 48517092 48517149 -52863372 + AT_rich Low_complexity Low_complexity 1 57 0 673 197 56 60 chr15 48517317 48517405 -52863116 - Charlie1 DNA MER1_type -135 2626 2539 2624 29 0 0 chr15 48517405 48517715 -52862806 + AluYa5 SINE Alu 1 310 -1 673 197 56 60 chr15 48517715 48517741 -52862780 - Charlie1 DNA MER1_type -222 2539 2514 2128 96 3 3 chr15 48517741 48518033 -52862488 + AluSx SINE Alu 1 292 -20 673 197 56 60 chr15 48518033 48518201 -52862320 - Charlie1 DNA MER1_type -247 2514 2344 914 179 32 21 chr15 48518293 48518483 -52862038 + MSTD LTR MaLR 1 192 -204 2322 50 23 0 chr15 48518483 48518783 -52861738 + AluY SINE Alu 1 307 -4 555 254 15 0 chr15 48518788 48518922 -52861599 + AluJb SINE Alu 121 256 -56 24 0 0 0 chr15 48519979 48520003 -52860518 + AT_rich Low_complexity Low_complexity 1 24 0 246 217 29 43 chr15 48520518 48520587 -52859934 + MIR SINE MIR 185 252 -10 215 211 0 0 chr15 48522870 48522908 -52857613 - MIR SINE MIR -8 254 217 2056 89 10 3 chr15 48523486 48523777 -52856744 + AluSx SINE Alu 1 293 -19 23 0 0 0 chr15 48523820 48523843 -52856678 + AT_rich Low_complexity Low_complexity 1 23 0 648 220 48 100 chr15 48524143 48524223 -52856298 - MER110A LTR ERV1 -38 453 370 1235 166 91 119 chr15 48524223 48524686 -52855835 + LTR7 LTR ERV1 1 450 0 648 220 48 100 chr15 48524686 48524734 -52855787 - MER110A LTR ERV1 -121 370 321 1843 110 0 31 chr15 48524734 48525051 -52855470 - AluSc SINE Alu 0 308 1 648 220 48 100 chr15 48525051 48525385 -52855136 - MER110A LTR ERV1 -170 321 44 2081 100 40 0 chr15 48525395 48525695 -52854826 - AluSq SINE Alu -1 312 1 378 0 0 0 chr15 48525705 48525747 -52854774 + (TG)n Simple_repeat Simple_repeat 1 42 0 2022 93 7 0 chr15 48525764 48526042 -52854479 - AluSx SINE Alu -32 280 1 319 195 2 68 chr15 48526071 48526177 -52854344 + AluS SINE Alu 3 83 -220 219 335 11 17 chr15 48526401 48526577 -52853944 + CT-rich Low_complexity Low_complexity 2 176 0 300 320 9 34 chr15 48526719 48526985 -52853536 + CT-rich Low_complexity Low_complexity 1 259 0 221 287 0 46 chr15 48527058 48527166 -52853355 + C-rich Low_complexity Low_complexity 1 103 0 609 91 0 0 chr15 48527312 48527389 -52853132 - Alu SINE Alu -232 78 2 2097 119 3 3 chr15 48527568 48527880 -52852641 + AluSq SINE Alu 1 312 -1 726 233 78 10 chr15 48528320 48528357 -52852164 - MER3 DNA MER1_type 0 209 176 2172 57 50 0 chr15 48528357 48528639 -52851882 - AluY SINE Alu -15 296 1 726 233 78 10 chr15 48528639 48528794 -52851727 - MER3 DNA MER1_type -33 176 4 1195 170 0 14 chr15 48528895 48529113 -52851408 - AluJb SINE Alu -9 303 89 260 250 33 0 chr15 48529129 48529189 -52851332 - MER5A DNA MER1_type 0 189 128 876 203 38 76 chr15 48529205 48529442 -52851079 + AluJo SINE Alu 67 294 -18 2250 67 3 58 chr15 48529442 48529769 -52850752 + AluY SINE Alu 1 309 -2 468 196 18 71 chr15 48529779 48529891 -52850630 - MER5A DNA MER1_type -80 109 4 263 340 0 57 chr15 48529900 48530006 -52850515 + MIR3 SINE MIR 108 207 -1 2055 107 3 10 chr15 48530248 48530557 -52849964 + AluSc SINE Alu 1 307 -2 2443 70 7 0 chr15 48531031 48531332 -52849189 - AluSg SINE Alu -7 303 1 1813 165 0 3 chr15 48531599 48531896 -52848625 + AluJb SINE Alu 1 296 -16 21 36 0 0 chr15 48532443 48532471 -52848050 + AT_rich Low_complexity Low_complexity 1 28 0 1860 141 0 40 chr15 48532477 48532637 -52847884 - AluSx SINE Alu -27 285 141 2684 43 3 0 chr15 48532637 48532940 -52847581 - AluY SINE Alu -6 305 2 1860 141 0 40 chr15 48532940 48533076 -52847445 - AluSx SINE Alu -171 141 1 1714 299 134 44 chr15 48533101 48533174 -52847347 + L2 LINE L2 1610 1675 -1597 777 254 5 28 chr15 48533174 48533387 -52847134 - MER3 DNA MER1_type 0 209 2 1714 299 134 44 chr15 48533387 48533733 -52846788 + L2 LINE L2 1675 1989 -1283 1822 101 112 4 chr15 48533733 48534000 -52846521 - AluSx SINE Alu -16 296 1 1714 299 134 44 chr15 48534000 48535087 -52845434 + L2 LINE L2 1989 3271 -1 542 225 124 64 chr15 48535145 48535301 -52845220 + L1MC4 LINE L1 7641 7819 -223 2104 118 0 31 chr15 48535301 48535483 -52845038 - AluSx SINE Alu 0 312 143 2122 133 0 7 chr15 48535483 48535783 -52844738 - AluSx SINE Alu -14 298 1 2104 118 0 31 chr15 48535783 48535922 -52844599 - AluSx SINE Alu -169 143 1 542 225 124 64 chr15 48535922 48536014 -52844507 + L1MC4 LINE L1 7819 7904 -138 184 264 270 25 chr15 48536054 48536213 -52844308 + MIR SINE MIR 51 248 -14 1004 155 21 27 chr15 48536240 48536427 -52844094 + AluJo SINE Alu 1 186 -126 1073 138 0 46 chr15 48536605 48536779 -52843742 - AluJb SINE Alu -64 248 83 252 289 41 21 chr15 48537688 48537785 -52842736 - L2 LINE L2 -38 3234 3136 2455 87 3 0 chr15 48538207 48538517 -52842004 + AluSp SINE Alu 1 311 -2 2239 118 0 6 chr15 48539886 48540200 -52840321 + AluSx SINE Alu 1 312 0 1681 107 119 0 chr15 48540420 48540672 -52839849 + AluSx SINE Alu 1 282 -30 23 0 0 0 chr15 48540907 48540930 -52839591 + AT_rich Low_complexity Low_complexity 1 23 0 514 270 69 19 chr15 48541181 48541392 -52839129 - MLT1I LTR MaLR -152 257 34 307 209 60 0 chr15 48541457 48541524 -52838997 - L2 LINE L2 -5 3308 3238 208 254 18 0 chr15 48541814 48541869 -52838652 + L2 LINE L2 3258 3313 0 1018 185 35 15 chr15 48542485 48542685 -52837836 - AluJo SINE Alu -108 204 1 524 46 0 0 chr15 48542791 48542856 -52837665 + MER41B LTR ERV1 481 545 -90 240 35 0 0 chr15 48542862 48542891 -52837630 + (GGGGA)n Simple_repeat Simple_repeat 5 33 0 282 186 0 0 chr15 48542891 48542943 -52837578 + GA-rich Low_complexity Low_complexity 7 61 0 1809 105 0 0 chr15 48543760 48543989 -52836532 - AluSx SINE Alu -66 246 18 1285 205 86 100 chr15 48544312 48544392 -52836129 - MLT1D LTR MaLR 0 505 425 2010 135 3 0 chr15 48544392 48544681 -52835840 + AluSg SINE Alu 1 290 -20 279 0 0 0 chr15 48544682 48544713 -52835808 + (CA)n Simple_repeat Simple_repeat 2 32 0 1285 205 86 100 chr15 48544713 48545026 -52835495 - MLT1D LTR MaLR -80 425 116 2048 123 4 0 chr15 48545026 48545303 -52835218 - AluSx SINE Alu -14 298 21 1285 205 86 100 chr15 48545303 48545418 -52835103 - MLT1D LTR MaLR -389 116 1 1835 173 0 13 chr15 48545540 48545846 -52834675 - AluJo SINE Alu -8 304 3 2143 107 0 20 chr15 48546477 48546612 -52833909 + AluSp SINE Alu 1 137 -176 2204 87 0 14 chr15 48546612 48546921 -52833600 + AluY SINE Alu 1 305 0 2143 107 0 20 chr15 48546921 48547082 -52833439 + AluSp SINE Alu 137 292 -21 299 264 0 0 chr15 48547082 48547169 -52833352 - L1MC4 LINE L1 -1342 6700 6614 1980 138 0 3 chr15 48547908 48548198 -52832323 - AluJb SINE Alu -23 289 1 504 32 0 0 chr15 48548205 48548267 -52832254 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 2281 92 0 10 chr15 48548268 48548562 -52831959 - AluY SINE Alu -20 291 1 3176 198 15 26 chr15 48548565 48549171 -52831350 - MER21B LTR ERV1 -221 642 44 365 246 0 0 chr15 48549177 48549246 -52831275 - MER21B LTR ERV1 -776 87 19 336 233 9 95 chr15 48549244 48549360 -52831161 - MER21B LTR ERV1 -757 106 1 * 1249 206 32 72 chr15 48549390 48549735 -52830786 + L1MC4 LINE L1 6458 6788 -1254 682 206 15 0 chr15 48549758 48549889 -52830632 - FLAM_A SINE Alu 0 133 1 189 0 0 0 chr15 48549906 48549927 -52830594 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2311 93 3 0 chr15 48549929 48550218 -52830303 - AluSp SINE Alu -23 290 1 629 62 12 0 chr15 48550218 48550299 -52830222 + L1MC4 LINE L1 6775 6856 -1186 289 206 279 0 chr15 48550301 48550369 -52830152 + AluJ/FLAM SINE Alu 2 88 -214 372 138 0 15 chr15 48550371 48550436 -52830085 - L1MC4 LINE L1 -489 7553 7490 458 162 0 0 chr15 48550439 48550513 -52830008 + AluJ/FRAM SINE Alu 220 293 -19 1702 203 74 3 chr15 48550526 48550916 -52829605 + L1MC4 LINE L1 7238 7655 -387 1201 271 72 24 chr15 48551023 48551399 -52829122 - LTR16A LTR ERVL -23 427 34 274 340 21 14 chr15 48551442 48551583 -52828938 - HERV16 LTR ERVL -18 4978 4837 2226 135 0 0 chr15 48551604 48551915 -52828606 + AluSx SINE Alu 1 311 -1 552 333 29 47 chr15 48551937 48552345 -52828176 - ERVL LTR ERVL -455 5309 4909 2143 142 0 0 chr15 48552359 48552655 -52827866 - AluSx SINE Alu -16 296 1 1453 194 45 8 chr15 48552672 48552940 -52827581 - AluJo SINE Alu -32 280 3 2246 86 10 10 chr15 48552943 48553233 -52827288 - AluSg SINE Alu -16 294 5 2099 151 7 0 chr15 48553239 48553538 -52826983 - AluSx SINE Alu -11 301 1 2364 95 0 9 chr15 48553558 48553874 -52826647 - AluSq SINE Alu 0 313 1 2327 114 0 0 chr15 48553912 48554220 -52826301 - AluSc SINE Alu -1 308 1 1865 119 0 0 chr15 48554239 48554483 -52826038 - AluSq SINE Alu -69 244 1 1183 130 5 33 chr15 48554484 48554668 -52825853 - AluSg/x SINE Alu 0 310 132 2576 60 0 0 chr15 48554668 48554970 -52825551 - AluY SINE Alu -9 302 1 2079 110 0 32 chr15 48554970 48555279 -52825242 - AluSx SINE Alu -13 299 1 1496 146 55 103 chr15 48555291 48555628 -52824893 - L1M4 LINE L1 -710 5474 5122 2013 159 0 0 chr15 48555628 48555924 -52824597 - AluJb SINE Alu -16 296 1 1481 199 10 7 chr15 48555928 48556219 -52824302 - AluJo SINE Alu -20 292 1 1496 146 55 103 chr15 48556219 48556503 -52824018 - L1M4 LINE L1 -1065 5119 4893 563 145 0 0 chr15 48556506 48556589 -52823932 + AluSg SINE Alu 1 83 -227 1940 147 7 7 chr15 48556936 48557228 -52823293 - AluSx SINE Alu -20 292 1 756 181 0 23 chr15 48557233 48557366 -52823155 - FLAM_A SINE Alu 0 133 4 1256 121 0 0 chr15 48557722 48557896 -52822625 - AluSq SINE Alu -3 310 137 1972 124 39 0 chr15 48557919 48558202 -52822319 + AluSq SINE Alu 1 294 -19 613 122 0 0 chr15 48558235 48558325 -52822196 + AluJ/FLAM SINE Alu 7 96 -216 * 711 183 8 15 chr15 48558320 48558451 -52822070 + FLAM_C SINE Alu 7 136 -7 319 328 57 26 chr15 48558507 48558736 -52821785 + MIR SINE MIR 1 236 -26 216 0 0 0 chr15 48558933 48558957 -52821564 + (T)n Simple_repeat Simple_repeat 1 24 0 1403 160 5 0 chr15 48558974 48559186 -52821335 - AluSx SINE Alu -77 235 23 2277 104 7 0 chr15 48559193 48559492 -52821029 - AluSp SINE Alu -11 302 2 2382 82 0 0 chr15 48560644 48560937 -52819584 - AluY SINE Alu -18 293 1 828 86 0 132 chr15 48561174 48561326 -52819195 + AluSq/x SINE Alu 3 134 -178 3235 129 168 22 chr15 48561443 48561967 -52818554 - L1MB7 LINE L1 -165 6019 5350 2267 108 0 10 chr15 48561967 48562272 -52818249 - AluSx SINE Alu -10 302 1 3235 129 168 22 chr15 48562272 48562482 -52818039 - L1MB7 LINE L1 -834 5350 5172 534 31 0 0 chr15 48562486 48562550 -52817971 + (ATTG)n Simple_repeat Simple_repeat 2 65 0 1072 197 0 0 chr15 48562550 48562728 -52817793 - AluSg/x SINE Alu -26 284 107 263 229 72 0 chr15 48562807 48562890 -52817631 + (TTGGGG)n Simple_repeat Simple_repeat 5 93 0 801 181 154 36 chr15 48563310 48563381 -52817140 - L1MB7 LINE L1 -1062 5084 5023 2255 90 0 0 chr15 48563381 48563659 -52816862 + AluSx SINE Alu 2 279 -33 801 181 154 36 chr15 48563659 48563808 -52816713 - L1MB7 LINE L1 -1123 5023 4838 632 242 33 13 chr15 48563815 48563968 -52816553 - MLT1F1 LTR MaLR -399 168 13 332 171 26 0 chr15 48564007 48564083 -52816438 + (CATA)n Simple_repeat Simple_repeat 3 80 0 1272 201 31 24 chr15 48564084 48564377 -52816144 - AluSq SINE Alu -18 295 1 1841 163 10 3 chr15 48564423 48564717 -52815804 + AluJb SINE Alu 1 296 -16 183 42 0 0 chr15 48564808 48564832 -52815689 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1955 130 4 0 chr15 48564836 48565112 -52815409 - AluSx SINE Alu -35 277 1 2358 252 159 30 chr15 48565498 48566785 -52813736 + L2 LINE L2 1524 2977 -337 1353 147 15 0 chr15 48566878 48567075 -52813446 - AluSg/x SINE Alu -47 265 66 522 212 134 37 chr15 48567089 48567306 -52813215 + L2 LINE L2 3076 3313 0 379 123 0 0 chr15 48567336 48567393 -52813128 - Alu SINE Alu -2 300 244 314 297 36 36 chr15 48567523 48567661 -52812860 - MIR3 SINE MIR -49 159 22 604 194 60 45 chr15 48568593 48568727 -52811794 - FLAM_C SINE Alu -6 137 2 810 139 0 0 chr15 48569414 48569522 -52810999 + FRAM SINE Alu 21 128 -48 200 360 0 11 chr15 48570187 48570276 -52810245 - MIR SINE MIR -114 148 61 232 143 0 0 chr15 48570312 48570347 -52810174 - Alu SINE Alu -268 35 1 1030 158 49 0 chr15 48570920 48571084 -52809437 + AluSg/x SINE Alu 118 289 -21 1458 108 205 46 chr15 48571370 48571629 -52808892 - AluSx SINE Alu -12 300 1 483 223 8 39 chr15 48572194 48572324 -52808197 + AluSg/x SINE Alu 170 295 -15 214 254 18 0 chr15 48572418 48572473 -52808048 + MER5B DNA MER1_type 122 177 -1 1759 144 31 14 chr15 48572617 48572908 -52807613 - AluSx SINE Alu -16 296 1 222 109 141 62 chr15 48573340 48573404 -52807117 + L2 LINE L2 3203 3271 -1 28 48 0 0 chr15 48575238 48575280 -52805241 + AT_rich Low_complexity Low_complexity 1 42 0 270 0 0 0 chr15 48576308 48576338 -52804183 + (TG)n Simple_repeat Simple_repeat 2 31 0 688 171 18 0 chr15 48576992 48577103 -52803418 - FRAM SINE Alu -39 137 25 404 167 0 0 chr15 48577105 48577171 -52803350 - L1M4 LINE L1 -1273 4873 4808 262 214 71 41 chr15 48577165 48577193 -52803328 - L1M4 LINE L1 -3757 2389 2363 * 1528 168 23 74 chr15 48577193 48577502 -52803019 - AluJo SINE Alu -18 294 2 262 214 71 41 chr15 48577502 48577571 -52802950 - L1M4 LINE L1 -3783 2363 2289 437 302 83 16 chr15 48577625 48577817 -52802704 - L1ME LINE L1 -456 5708 5504 346 259 71 9 chr15 48578453 48578565 -52801956 + MIR3 SINE MIR 15 133 -75 538 321 67 18 chr15 48579412 48579636 -52800885 + MIR SINE MIR 2 236 -26 938 233 155 13 chr15 48579968 48580285 -52800236 + L2 LINE L2 2440 2801 -513 794 257 119 41 chr15 48580343 48580445 -52800076 + L2 LINE L2 2919 3012 -301 1910 60 34 0 chr15 48580445 48580678 -52799843 + AluY SINE Alu 64 304 -7 794 257 119 41 chr15 48580678 48580937 -52799584 + L2 LINE L2 3012 3308 -5 2147 109 21 0 chr15 48582079 48582363 -52798158 - AluSx SINE Alu -22 290 1 1414 151 49 99 chr15 48582383 48582687 -52797834 - AluJo SINE Alu -12 290 2 2020 78 10 30 chr15 48582695 48582991 -52797530 - AluY SINE Alu -21 290 1 900 164 0 13 chr15 48583201 48583353 -52797168 - AluSq/x SINE Alu -163 150 1 201 279 0 0 chr15 48583432 48583475 -52797046 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 2127 116 7 3 chr15 48584000 48584310 -52796211 + AluSq SINE Alu 1 311 -2 278 238 87 79 chr15 48584312 48584438 -52796083 - L1ME4a LINE L1 -16 6105 5979 242 282 163 26 chr15 48584530 48584936 -52795585 - L1MC4a LINE L1 -105 6016 5603 345 261 72 18 chr15 48585158 48585269 -52795252 + L1MC4 LINE L1 6589 6705 -1337 1857 69 80 15 chr15 48585288 48585550 -52794971 - AluSg SINE Alu -31 279 1 1967 141 0 0 chr15 48585787 48586078 -52794443 - AluSx SINE Alu -21 291 1 797 179 11 27 chr15 48586091 48586275 -52794246 - L1MB8 LINE L1 -3 6175 5995 714 355 34 6 chr15 48586681 48587008 -52793513 - L2 LINE L2 -1094 2220 1885 1309 368 3 26 chr15 48587103 48587413 -52793108 - AluY SINE Alu -8 303 1 475 281 143 17 chr15 48587418 48587656 -52792865 + L2 LINE L2 2838 3105 -167 375 219 90 39 chr15 48588632 48588810 -52791711 - L1ME4a LINE L1 -1 6120 5934 477 254 9 86 chr15 48588949 48589169 -52791352 + L2 LINE L2 3079 3281 -32 248 229 16 0 chr15 48589169 48589230 -52791291 - L1MC4a LINE L1 -580 7228 7167 362 278 23 38 chr15 48589231 48589364 -52791157 - L1ME4a LINE L1 -279 5842 5712 326 183 0 0 chr15 48589974 48590034 -52790487 + MER53 DNA DNA 130 189 0 2009 120 3 3 chr15 48590124 48590415 -52790106 + AluSq SINE Alu 1 291 -22 705 231 106 10 chr15 48590502 48590701 -52789820 + L1MC5 LINE L1 6649 6866 -1095 436 241 8 15 chr15 48590735 48590868 -52789653 + L1MC5 LINE L1 7782 7913 -48 210 154 0 0 chr15 48590998 48591037 -52789484 + (TA)n Simple_repeat Simple_repeat 1 39 0 1790 117 4 0 chr15 48591039 48591296 -52789225 - AluSx SINE Alu -31 281 24 386 392 83 15 chr15 48591460 48591825 -52788696 + HAL1 LINE L1 921 1302 -1205 2220 78 6 34 chr15 48592118 48592440 -52788081 + AluSp SINE Alu 1 313 0 1993 135 3 0 chr15 48593245 48593548 -52786973 - AluSx SINE Alu -8 304 1 2167 94 0 7 chr15 48594524 48594821 -52785700 + AluSp SINE Alu 1 295 -18 2138 85 27 0 chr15 48594826 48595120 -52785401 + AluSp SINE Alu 1 302 -11 348 261 42 25 chr15 48595345 48595505 -52785016 - MLT1J LTR MaLR -279 336 111 343 339 63 19 chr15 48595794 48596030 -52784491 + MIR SINE MIR 15 256 -6 3431 135 47 27 chr15 48596055 48596085 -52784436 + LTR26 LTR ERV1 1 29 -574 2151 86 0 0 chr15 48596085 48596393 -52784128 + AluY SINE Alu 1 308 0 3431 135 47 27 chr15 48596393 48596952 -52783569 + LTR26 LTR ERV1 29 603 0 303 281 151 69 chr15 48596957 48597274 -52783247 + MLT1K LTR MaLR 7 349 -239 389 214 0 0 chr15 48597569 48597639 -52782882 + MER8 DNA MER2_type 160 229 -10 315 270 32 24 chr15 48597736 48597862 -52782659 + L2 LINE L2 2004 2130 -1184 2001 119 24 0 chr15 48597925 48598218 -52782303 - AluSx SINE Alu -12 300 1 1264 275 172 22 chr15 48598242 48599021 -52781500 + L2 LINE L2 2346 3235 -78 4087 237 69 74 chr15 48599810 48600719 -52779802 + HAL1 LINE L1 656 1568 -939 652 55 44 0 chr15 48600719 48600810 -52779711 + L1PB1 LINE L1 6056 6150 -1 4087 237 69 74 chr15 48600810 48601616 -52778905 + HAL1 LINE L1 1568 2364 -143 1881 116 4 0 chr15 48601616 48601893 -52778628 + AluY SINE Alu 33 310 -1 4087 237 69 74 chr15 48601893 48601983 -52778538 + HAL1 LINE L1 2364 2453 -54 280 282 45 9 chr15 48602245 48602355 -52778166 + MER5B DNA MER1_type 11 124 -54 2160 121 0 0 chr15 48602356 48602663 -52777858 - AluSx SINE Alu -5 307 1 1696 94 12 16 chr15 48602672 48602927 -52777594 - AluY SINE Alu -3 308 55 856 201 0 66 chr15 48602933 48603206 -52777315 - AluY SINE Alu -12 299 45 520 213 43 111 chr15 48604395 48604630 -52775891 - AluY SINE Alu -91 220 2 184 156 16 219 chr15 48604685 48604704 -52775817 - MER5B DNA MER1_type -125 53 32 1910 123 0 66 chr15 48604704 48605036 -52775485 + AluSx SINE Alu 1 310 -2 184 156 16 219 chr15 48605036 48605080 -52775441 - MER5B DNA MER1_type -146 32 3 215 241 103 0 chr15 48605958 48606016 -52774505 - MIR SINE MIR -4 258 195 233 273 0 0 chr15 48607222 48607277 -52773244 + L1MB7 LINE L1 5512 5566 -618 2936 180 55 2 chr15 48607813 48608395 -52772126 + L1MB7 LINE L1 5553 6165 -19 2076 125 0 3 chr15 48608442 48608745 -52771776 - AluSx SINE Alu -10 302 1 1789 113 132 0 chr15 48608787 48609053 -52771468 + AluSx SINE Alu 1 301 -1 332 136 136 0 chr15 48609884 48609943 -52770578 + L1MC4 LINE L1 6771 6837 -1205 * 422 171 57 26 chr15 48609942 48610072 -52770449 - L1MC4 LINE L1 -806 7036 6873 2317 36 0 4 chr15 48611001 48611321 -52769200 + AluY SINE Alu 1 319 0 196 315 0 0 chr15 48611795 48611849 -52768672 - MIR SINE MIR -63 145 92 611 241 49 38 chr15 48611948 48612214 -52768307 - AluSc SINE Alu -7 302 34 587 147 0 92 chr15 48613428 48613504 -52767017 - AluY SINE Alu -111 200 135 2108 107 0 3 chr15 48613504 48613802 -52766719 - AluSg SINE Alu -13 297 1 587 147 0 92 chr15 48613802 48613834 -52766687 - AluY SINE Alu -176 135 102 1685 184 19 0 chr15 48614108 48614423 -52766098 + MER73 LTR ERVL 324 644 0 1757 158 20 13 chr15 48614590 48614894 -52765627 + AluJb SINE Alu 1 306 -6 289 317 118 0 chr15 48614895 48615057 -52765464 + MIR SINE MIR 8 197 -65 983 92 0 0 chr15 48615239 48615369 -52765152 - AluSg SINE Alu -180 130 1 767 235 235 22 chr15 48615731 48615887 -52764634 + L2 LINE L2 1317 1438 -1876 939 189 44 84 chr15 48615887 48616136 -52764385 + MER8 DNA MER2_type 1 239 0 767 235 235 22 chr15 48616136 48616302 -52764219 + L2 LINE L2 1438 1708 -1606 1093 133 0 12 chr15 48616316 48616489 -52764032 + AluJo SINE Alu 1 171 -141 1575 151 4 11 chr15 48616804 48617082 -52763439 + AluSx SINE Alu 28 303 -9 235 210 0 32 chr15 48617082 48617144 -52763377 + L1MC5 LINE L1 7848 7907 -54 1058 246 47 19 chr15 48617153 48617474 -52763047 + L2 LINE L2 1698 2027 -1287 1650 132 0 83 chr15 48617825 48617995 -52762526 - AluJb SINE Alu -12 300 168 1783 148 10 3 chr15 48617995 48618286 -52762235 - AluJb SINE Alu -19 293 1 1650 132 0 83 chr15 48618286 48618442 -52762079 - AluJb SINE Alu -144 168 1 297 228 54 33 chr15 48618503 48618595 -52761926 - L2 LINE L2 -40 3232 3139 458 120 13 13 chr15 48618758 48618833 -52761688 - AluSg/x SINE Alu -30 280 206 574 117 0 0 chr15 48619164 48619241 -52761280 - AluSg/x SINE Alu -30 279 203 810 83 9 0 chr15 48619317 48619426 -52761095 + L1PA8A LINE L1 5994 6103 -28 2190 93 0 16 chr15 48619566 48619879 -52760642 + AluSx SINE Alu 1 308 -4 402 309 40 13 chr15 48621247 48621396 -52759125 - MLT1K LTR MaLR -418 170 18 873 110 39 0 chr15 48621538 48621665 -52758856 + AluJb SINE Alu 1 132 -180 836 193 20 0 chr15 48621733 48621883 -52758638 - AluSg/x SINE Alu -39 273 121 731 180 16 0 chr15 48621937 48622059 -52758462 - AluJb SINE Alu -187 125 2 1930 116 0 0 chr15 48622068 48622336 -52758185 - AluSx SINE Alu -24 288 21 454 318 127 45 chr15 48622740 48622761 -52757760 + L1MC4a LINE L1 5463 5481 -2327 1938 125 28 0 chr15 48622761 48623050 -52757471 + AluSx SINE Alu 1 297 -15 454 318 127 45 chr15 48623050 48623468 -52757053 + L1MC4a LINE L1 5481 5938 -1870 2102 110 3 0 chr15 48624870 48625162 -52755359 - AluSq SINE Alu -20 293 1 1822 109 42 0 chr15 48625484 48625603 -52754918 + AluSc SINE Alu 1 114 -195 405 0 0 0 chr15 48625603 48625648 -52754873 + (CA)n Simple_repeat Simple_repeat 2 46 0 1822 109 42 0 chr15 48625648 48625812 -52754709 + AluSc SINE Alu 114 296 -13 33 0 0 0 chr15 48627235 48627268 -52753253 + GC_rich Low_complexity Low_complexity 1 33 0 1911 57 0 8 chr15 48627409 48627656 -52752865 - AluY SINE Alu -66 245 1 422 143 4 0 chr15 48627659 48627734 -52752787 + LTR41 LTR ERVL 453 523 0 427 254 64 0 chr15 48627747 48627857 -52752664 + HERVL LTR ERVL 2854 2970 -2684 2041 173 9 6 chr15 48627861 48628207 -52752314 - MLT1A1 LTR MaLR 0 365 19 4459 264 68 6 chr15 48628216 48629410 -52751111 + HERVL LTR ERVL 3008 4275 -1489 596 204 46 0 chr15 48629447 48629599 -52750922 + LTR37A LTR ERV1 268 426 0 669 263 105 0 chr15 48629770 48629941 -52750580 + MIR SINE MIR 48 236 -26 2388 181 99 0 chr15 48630114 48630600 -52749921 - L1MB7 LINE L1 -2 6182 5649 1586 113 77 18 chr15 48630885 48631015 -52749506 - L1MA5 LINE L1 -4 6296 6175 2554 133 24 42 chr15 48631015 48631342 -52749179 + MER65A LTR ERV1 1 319 -126 2219 88 0 22 chr15 48631342 48631659 -52748862 - AluY SINE Alu -1 310 1 2554 133 24 42 chr15 48631659 48631784 -52748737 + MER65A LTR ERV1 319 445 0 1586 113 77 18 chr15 48631784 48631927 -52748594 - L1MA5 LINE L1 -125 6175 6007 1042 172 67 50 chr15 48632692 48632930 -52747591 + Charlie1 DNA MER1_type 1 242 -2519 736 133 15 52 chr15 48632922 48633016 -52747505 + Charlie1 DNA MER1_type 2631 2720 -41 * 2224 79 3 7 chr15 48633016 48633320 -52747201 + AluSp SINE Alu 1 303 -10 736 133 15 52 chr15 48633320 48633360 -52747161 + Charlie1 DNA MER1_type 2720 2760 -1 426 305 0 58 chr15 48633427 48633617 -52746904 + G-rich Low_complexity Low_complexity 1 179 0 305 258 0 43 chr15 48633624 48633749 -52746772 + G-rich Low_complexity Low_complexity 1 119 0 1986 82 27 14 chr15 48635443 48635735 -52744786 - AluY SINE Alu -15 296 1 277 252 36 108 chr15 48636695 48636787 -52743734 + MER110 LTR ERV1 363 443 -48 2164 110 0 0 chr15 48636787 48637086 -52743435 - AluSx SINE Alu -13 299 1 277 252 36 108 chr15 48637086 48637132 -52743389 + MER110 LTR ERV1 443 491 0 234 91 0 0 chr15 48637249 48637282 -52743239 + (A)n Simple_repeat Simple_repeat 1 33 0 376 279 121 55 chr15 48637406 48637571 -52742950 - L3 LINE CR1 -2 1575 1400 233 290 65 28 chr15 48637952 48638059 -52742462 - L2 LINE L2 0 3272 3162 294 280 0 40 chr15 48638253 48638353 -52742168 - L2 LINE L2 -240 3032 2937 2095 105 3 0 chr15 48638529 48638815 -52741706 - AluSx SINE Alu -14 298 12 514 249 226 20 chr15 48639567 48639969 -52740552 - L1ME4a LINE L1 0 6121 5637 2256 62 3 7 chr15 48640050 48640341 -52740180 - AluY SINE Alu -21 290 1 2107 100 7 10 chr15 48641433 48641734 -52738787 - AluSq SINE Alu -13 300 1 256 236 87 31 chr15 48641908 48642035 -52738486 - L1ME4a LINE L1 -2362 5423 5290 301 301 7 52 chr15 48642089 48642242 -52738279 - L1ME4a LINE L1 -889 5257 5112 456 281 148 36 chr15 48642318 48642621 -52737900 + L1ME4a LINE L1 5562 5898 -223 637 274 73 36 chr15 48643202 48643450 -52737071 + MIR SINE MIR 6 262 0 2218 114 0 0 chr15 48643582 48643889 -52736632 - AluSx SINE Alu -1 311 5 389 206 116 48 chr15 48644398 48644544 -52735977 + MER20 DNA MER1_type 63 218 -1 582 198 60 0 chr15 48644560 48644676 -52735845 + MLT1J LTR MaLR 71 193 -318 287 244 154 8 chr15 48645321 48645444 -52735077 - L2 LINE L2 -188 3084 2944 2137 113 0 0 chr15 48645463 48645763 -52734758 - AluSx SINE Alu -12 300 1 1554 144 29 122 chr15 48645789 48646165 -52734356 - MER2 DNA MER2_type -3 341 1 293 247 58 98 chr15 48646505 48646679 -52733842 + L2 LINE L2 2250 2416 -898 1192 217 44 20 chr15 48646684 48646979 -52733542 + LTR40b LTR ERVL 161 462 0 336 333 52 0 chr15 48646979 48647114 -52733407 + L2 LINE L2 2555 2696 -618 1256 152 68 27 chr15 48647115 48647378 -52733143 - AluJb SINE Alu 0 312 39 207 145 26 171 chr15 48647378 48647454 -52733067 + L2 LINE L2 2687 2751 -563 898 232 201 14 chr15 48647495 48647788 -52732733 + L2 LINE L2 2966 3313 0 217 321 66 0 chr15 48648657 48648763 -52731758 + MIR SINE MIR 30 142 -66 181 186 169 17 chr15 48649633 48649692 -52730829 - MIR SINE MIR -123 85 18 378 0 0 0 chr15 48650496 48650538 -52729983 + (CA)n Simple_repeat Simple_repeat 2 43 0 827 65 8 0 chr15 48650708 48650831 -52729690 + (CA)n Simple_repeat Simple_repeat 2 125 0 350 205 60 25 chr15 48651099 48651224 -52729297 - MER5A DNA MER1_type -53 125 4 247 296 70 43 chr15 48651342 48651457 -52729064 - L2 LINE L2 -9 3263 3146 1456 171 32 3 chr15 48651465 48651903 -52728618 + MER110 LTR ERV1 1 484 -7 241 177 65 0 chr15 48651987 48652049 -52728472 - L2 LINE L2 -241 3031 2966 197 288 68 0 chr15 48652141 48652200 -52728321 - L2 LINE L2 -567 2747 2685 1980 107 0 0 chr15 48652788 48653059 -52727462 + AluSx SINE Alu 29 299 -13 603 224 69 65 chr15 48653803 48653818 -52726703 - MIR SINE MIR 0 262 249 1603 161 0 47 chr15 48653818 48654143 -52726378 + AluJo SINE Alu 1 311 0 603 224 69 65 chr15 48654143 48654372 -52726149 - MIR SINE MIR -13 249 16 718 116 20 116 chr15 48656090 48656237 -52724284 - FLAM_C SINE Alu 0 133 1 2112 281 120 30 chr15 48656239 48657387 -52723134 - L1MC4 LINE L1 -7 8035 6785 2112 124 0 0 chr15 48657531 48657837 -52722684 + AluSx SINE Alu 1 306 -6 187 333 12 48 chr15 48658081 48658165 -52722356 + L2 LINE L2 3191 3271 -1 1520 253 61 74 chr15 48659163 48659738 -52720783 + MER77 LTR ERV1 60 601 -4 23 54 0 0 chr15 48659862 48659899 -52720622 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr15 48659992 48660014 -52720507 + AT_rich Low_complexity Low_complexity 1 22 0 352 265 52 73 chr15 48660015 48660287 -52720234 + AluJb SINE Alu 1 266 -36 2398 52 0 10 chr15 48661235 48661540 -52718981 - AluY SINE Alu -9 302 1 364 154 7 13 chr15 48661588 48661660 -52718861 - MER110 LTR ERV1 -388 103 1 707 293 27 23 chr15 48661752 48661839 -52718682 - L1ME LINE L1 -302 5819 5734 1591 170 6 56 chr15 48661839 48662162 -52718359 - AluJb SINE Alu -3 309 3 707 293 27 23 chr15 48662162 48662374 -52718147 - L1ME LINE L1 -387 5734 5519 809 148 7 0 chr15 48662443 48662578 -52717943 - FLAM_A SINE Alu -1 141 6 2090 120 13 0 chr15 48662864 48663164 -52717357 - AluSx SINE Alu -8 304 1 199 327 20 50 chr15 48663708 48663809 -52716712 - MIR SINE MIR -68 140 43 233 290 43 11 chr15 48666127 48666220 -52714301 - MARNA DNA Mariner -211 375 280 822 204 80 6 chr15 48667093 48667269 -52713252 + AluJb SINE Alu 122 310 -2 2110 96 0 23 chr15 48667608 48667909 -52712612 - AluSx SINE Alu -18 294 1 1654 144 40 18 chr15 48667920 48668198 -52712323 - AluJb SINE Alu -17 295 12 1661 217 137 19 chr15 48668291 48668774 -52711747 + MLT1F LTR MaLR 1 540 -2 353 252 113 17 chr15 48669743 48669858 -52710663 - MIR SINE MIR -63 145 20 186 343 27 0 chr15 48670278 48670351 -52710170 - MIR3 SINE MIR -26 182 108 3139 226 139 12 chr15 48670713 48671644 -52708877 - L1MC4 LINE L1 -191 7851 6803 1710 149 6 50 chr15 48671734 48672055 -52708466 + AluJb SINE Alu 1 307 -5 2379 60 0 3 chr15 48672219 48672520 -52708001 - AluY SINE Alu -11 300 1 2096 106 3 0 chr15 48672535 48672828 -52707693 - AluSg SINE Alu -16 294 1 339 353 43 22 chr15 48673446 48673585 -52706936 + MIR SINE MIR 8 149 -113 187 298 21 0 chr15 48673642 48673689 -52706832 + L2 LINE L2 3266 3313 0 219 313 101 76 chr15 48674083 48674371 -52706150 - L2 LINE L2 -49 3223 2929 233 318 27 18 chr15 48674525 48674635 -52705886 - L2 LINE L2 -582 2732 2622 505 302 23 23 chr15 48674962 48675227 -52705294 - L1 LINE L1 -2015 4131 3867 1016 185 70 70 chr15 48675233 48675535 -52704986 - AluSx SINE Alu 0 302 1 190 298 124 41 chr15 48675790 48675911 -52704610 + MIR SINE MIR 98 228 -34 280 245 185 20 chr15 48676113 48676264 -52704257 - L1ME4a LINE L1 -11 6110 5935 297 253 60 0 chr15 48676341 48676424 -52704097 - L1ME4a LINE L1 -298 5823 5736 387 195 11 11 chr15 48676454 48676541 -52703980 - L1ME4a LINE L1 -458 5663 5577 362 219 171 11 chr15 48676541 48676683 -52703838 - MIR SINE MIR -5 257 83 834 244 0 30 chr15 48677038 48677268 -52703253 - AluSx SINE Alu -89 223 1 831 50 0 0 chr15 48678423 48678523 -52701998 + HY3 scRNA scRNA 1 100 -1 20110 163 30 33 chr15 48678564 48679608 -52700913 + L1PA11 LINE L1 7 1053 -6559 2087 102 0 22 chr15 48679608 48679923 -52700598 + AluSg SINE Alu 1 308 -2 2107 92 0 31 chr15 48679924 48680241 -52700280 + AluY SINE Alu 2 308 -3 20110 163 30 33 chr15 48680241 48683067 -52697454 + L1PA11 LINE L1 1053 3886 -3726 2223 112 0 3 chr15 48683067 48683379 -52697142 + AluSq SINE Alu 1 311 -2 20110 163 30 33 chr15 48683379 48684721 -52695800 + L1PA11 LINE L1 3886 5230 -2382 1910 129 58 0 chr15 48684721 48684973 -52695548 + AluSx SINE Alu 1 274 -38 2090 98 0 4 chr15 48684973 48685248 -52695273 + AluSq SINE Alu 40 313 0 1910 129 58 0 chr15 48685248 48685290 -52695231 + AluSx SINE Alu 274 312 0 20110 163 30 33 chr15 48685290 48686401 -52694120 + L1PA11 LINE L1 5230 7612 0 1920 133 44 0 chr15 48686503 48686796 -52693725 + AluSx SINE Alu 1 306 -6 295 269 118 54 chr15 48686807 48687138 -52693383 + L1ME4a LINE L1 5723 6074 -47 1670 162 56 40 chr15 48687806 48688108 -52692413 - AluJo SINE Alu -5 307 1 1835 125 55 4 chr15 48688178 48688450 -52692071 + AluJo SINE Alu 2 287 -25 604 264 92 75 chr15 48688698 48688934 -52691587 - L2 LINE L2 -5 3308 3077 759 118 17 8 chr15 48688934 48689053 -52691468 - FLAM_C SINE Alu -12 121 2 604 264 92 75 chr15 48689053 48689308 -52691213 - L2 LINE L2 -236 3077 2809 207 304 20 59 chr15 48689395 48689497 -52691024 + MIR SINE MIR 55 152 -56 1764 151 133 3 chr15 48689571 48689916 -52690605 + MLT1D LTR MaLR 1 390 -115 336 241 18 107 chr15 48690071 48690139 -52690382 + MER81 DNA DNA 13 70 -44 1902 134 33 0 chr15 48690139 48690439 -52690082 + AluSx SINE Alu 1 309 0 336 241 18 107 chr15 48690439 48690481 -52690040 + MER81 DNA DNA 70 114 0 561 71 0 24 chr15 48691458 48691543 -52688978 - AluSg1 SINE Alu -216 93 11 2173 123 23 0 chr15 48691596 48691897 -52688624 + AluSx SINE Alu 1 308 -4 403 221 62 0 chr15 48692402 48692515 -52688006 + MIR SINE MIR 42 161 -101 284 31 0 0 chr15 48692523 48692555 -52687966 - AluSq/x SINE Alu -195 107 76 * 409 261 140 76 chr15 48692553 48692862 -52687659 + MLT1J LTR MaLR 240 473 -38 212 227 0 0 chr15 48693889 48693933 -52686588 + (CCG)n Simple_repeat Simple_repeat 2 45 0 21 95 0 0 chr15 48694151 48694214 -52686307 + GC_rich Low_complexity Low_complexity 1 63 0 264 316 0 0 chr15 48694355 48694453 -52686068 - MIR SINE MIR -118 144 47 658 229 45 15 chr15 48694984 48695185 -52685336 - MIR SINE MIR -21 241 35 281 236 42 0 chr15 48695474 48695546 -52684975 + MIR SINE MIR 118 192 -70 2290 105 20 0 chr15 48695554 48695860 -52684661 + AluSx SINE Alu 1 312 0 210 200 17 67 chr15 48696005 48696065 -52684456 + L2 LINE L2 3216 3272 0 24 0 0 0 chr15 48696065 48696089 -52684432 + AT_rich Low_complexity Low_complexity 1 24 0 205 235 12 24 chr15 48696104 48696189 -52684332 + (TAAA)n Simple_repeat Simple_repeat 1 84 0 352 235 144 23 chr15 48696219 48696351 -52684170 + MIR SINE MIR 4 151 -111 1813 125 0 4 chr15 48697471 48697719 -52682802 + AluSx SINE Alu 1 247 -65 362 43 0 0 chr15 48697723 48697769 -52682752 - MADE1 DNA Mariner -34 46 1 577 287 57 29 chr15 48698780 48699024 -52681497 - MIR SINE MIR -10 252 2 347 230 213 23 chr15 48699869 48700043 -52680478 + MIR SINE MIR 8 214 -48 2257 138 27 41 chr15 48700343 48700453 -52680068 + LTR56 LTR ERV1 17 127 -310 1982 135 7 0 chr15 48700453 48700778 -52679743 - AluSx SINE Alu 0 327 1 2257 138 27 41 chr15 48700778 48701114 -52679407 + LTR56 LTR ERV1 127 431 -6 258 232 71 10 chr15 48702520 48702619 -52677902 - L1MC/D LINE L1 -2003 5805 5701 768 159 16 104 chr15 48702635 48702817 -52677704 + L1MC/D LINE L1 5511 5676 -508 2012 118 62 0 chr15 48702818 48703106 -52677415 + AluSx SINE Alu 1 306 -6 470 238 107 42 chr15 48703106 48703367 -52677154 - L2 LINE L2 -361 2953 2676 297 316 60 8 chr15 48703759 48703876 -52676645 - MIR SINE MIR -111 151 29 1614 183 25 82 chr15 48703979 48704409 -52676112 + L1MB7 LINE L1 5762 6167 -17 2460 80 0 0 chr15 48704409 48704708 -52675813 - AluY SINE Alu -12 299 1 1614 183 25 82 chr15 48704708 48704726 -52675795 + L1MB7 LINE L1 6167 6184 0 1289 231 106 60 chr15 48704722 48705242 -52675279 + L1ME3 LINE L1 5319 5862 -300 * 21 100 0 0 chr15 48705371 48705441 -52675080 + AT_rich Low_complexity Low_complexity 1 70 0 22 0 0 0 chr15 48707144 48707166 -52673355 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr15 48707232 48707274 -52673247 + AT_rich Low_complexity Low_complexity 1 42 0 2431 73 3 10 chr15 48707324 48707626 -52672895 + AluSc SINE Alu 1 300 -9 856 108 129 217 chr15 48708709 48709280 -52671241 - Charlie1 DNA MER1_type -4 2757 1 1721 138 17 54 chr15 48710102 48710400 -52670121 - AluJo SINE Alu -25 287 1 250 87 22 43 chr15 48710880 48710926 -52669595 + MIR3 SINE MIR 120 164 -44 275 206 137 0 chr15 48711219 48711292 -52669229 + MIR SINE MIR 37 119 -89 3355 151 27 63 chr15 48711297 48711927 -52668594 + L1MB8 LINE L1 5504 6108 -70 2085 124 3 13 chr15 48711927 48712225 -52668296 - AluSx SINE Alu -17 295 1 3355 151 27 63 chr15 48712225 48712294 -52668227 + L1MB8 LINE L1 6108 6178 0 199 238 0 0 chr15 48712298 48712340 -52668181 + MIR3 SINE MIR 145 186 -22 2173 115 7 7 chr15 48712340 48712636 -52667885 + AluSq SINE Alu 1 296 -17 2248 112 0 0 chr15 48712842 48713169 -52667352 - AluSg SINE Alu 0 310 1 2394 69 3 7 chr15 48713178 48713483 -52667038 - AluY SINE Alu -7 304 1 1964 123 11 0 chr15 48714575 48714836 -52665685 + AluSq SINE Alu 1 264 -49 207 0 0 0 chr15 48714838 48714861 -52665660 + (TAA)n Simple_repeat Simple_repeat 2 24 0 4894 210 63 33 chr15 48714875 48716378 -52664143 + L1MDa LINE L1 1012 2559 -3981 316 100 0 0 chr15 48716402 48716442 -52664079 + FLAM SINE Alu 85 124 -9 1755 101 0 4 chr15 48716456 48716684 -52663837 + AluSg/x SINE Alu 73 299 -13 3085 69 13 38 chr15 48717159 48717208 -52663313 - L1MA1 LINE L1 -4 6298 6249 2080 128 0 10 chr15 48717208 48717513 -52663008 - AluSx SINE Alu -10 302 1 3085 69 13 38 chr15 48717513 48717627 -52662894 - L1MA1 LINE L1 -53 6249 6134 2395 97 7 0 chr15 48717627 48717935 -52662586 - AluSx SINE Alu -2 310 1 3085 69 13 38 chr15 48717935 48718217 -52662304 - L1MA1 LINE L1 -168 6134 5863 1498 187 34 83 chr15 48720669 48721076 -52659445 + MLT1B LTR MaLR 1 387 -3 2352 107 3 3 chr15 48721141 48721451 -52659070 + AluSx SINE Alu 1 310 -2 904 260 163 7 chr15 48721889 48722346 -52658175 + L1ME LINE L1 5051 5576 -588 186 289 70 61 chr15 48722560 48722674 -52657847 - MIR3 SINE MIR -6 202 88 2024 156 0 0 chr15 48724258 48724553 -52655968 - AluJb SINE Alu -17 295 1 287 259 52 21 chr15 48725361 48725521 -52655000 + MLT1J LTR MaLR 245 470 -41 750 220 147 0 chr15 48727161 48727352 -52653169 + MER20 DNA MER1_type 1 219 0 641 126 19 3 chr15 48727967 48728083 -52652438 - MLT1D LTR MaLR 0 505 403 2034 159 27 22 chr15 48729038 48729447 -52651074 - L1MB7 LINE L1 0 6184 5774 1106 250 91 77 chr15 48729951 48730516 -52650005 - L1ME4a LINE L1 -78 6043 5466 1620 171 28 21 chr15 48730516 48730802 -52649719 - AluJo SINE Alu -24 288 1 1106 250 91 77 chr15 48730802 48730876 -52649645 - L1ME4a LINE L1 -655 5466 5395 1434 206 99 32 chr15 48730974 48731407 -52649114 + MLT1C LTR MaLR 6 467 0 180 0 0 0 chr15 48731788 48731808 -52648713 + (CAAGG)n Simple_repeat Simple_repeat 3 22 0 1460 119 50 0 chr15 48734209 48734427 -52646094 + MER30 DNA MER1_type 2 230 0 864 214 69 62 chr15 48734456 48734636 -52645885 + MER102a DNA MER1_type 40 224 -1193 1625 170 0 58 chr15 48734636 48734826 -52645695 - AluJb SINE Alu -6 306 152 1969 134 10 26 chr15 48734826 48735131 -52645390 + AluSq SINE Alu 1 300 -13 1625 170 0 58 chr15 48735131 48735264 -52645257 - AluJb SINE Alu -160 152 13 864 214 69 62 chr15 48735264 48735372 -52645149 + MER102a DNA MER1_type 224 330 0 2514 124 0 16 chr15 48736153 48736525 -52643996 + MER47A DNA MER2_type 1 366 0 375 342 120 25 chr15 48736656 48737171 -52643350 - L2 LINE L2 -1178 2136 1564 2053 95 46 0 chr15 48737171 48737456 -52643065 + AluSg SINE Alu 1 298 -12 375 342 120 25 chr15 48737456 48737489 -52643032 - L2 LINE L2 -1750 1564 1536 2040 117 0 0 chr15 48738320 48738624 -52641897 + AluSx SINE Alu 1 304 0 1578 170 18 0 chr15 48738627 48738904 -52641617 + L1MC1 LINE L1 6046 6327 -6 354 313 0 0 chr15 48739554 48739666 -52640855 + (CCAA)n Simple_repeat Simple_repeat 4 115 0 2215 108 0 0 chr15 48740088 48740385 -52640136 + AluSq SINE Alu 1 297 -16 228 241 86 0 chr15 48740881 48740939 -52639582 - MIR SINE MIR -44 218 156 1994 101 11 14 chr15 48741181 48741468 -52639053 + AluSq SINE Alu 1 286 -27 803 87 0 0 chr15 48741582 48741686 -52638835 - AluY SINE Alu -207 104 1 211 308 13 13 chr15 48741893 48741971 -52638550 - MIR3 SINE MIR -22 186 109 2347 68 0 0 chr15 48742337 48742630 -52637891 - AluSg SINE Alu -16 294 2 825 168 68 6 chr15 48742688 48742915 -52637606 - L1MA7 LINE L1 -2 6310 6064 1754 141 4 0 chr15 48743532 48743808 -52636713 + AluJo SINE Alu 1 277 -35 2078 91 7 29 chr15 48744583 48744892 -52635629 - AluSq SINE Alu -5 308 7 2203 103 0 0 chr15 48745016 48745317 -52635204 - AluSx SINE Alu -11 301 1 692 145 11 34 chr15 48746296 48746475 -52634046 + GA-rich Low_complexity Low_complexity 3 177 0 211 218 13 39 chr15 48746499 48746577 -52633944 + A-rich Low_complexity Low_complexity 3 78 0 23 24 0 24 chr15 48747171 48747193 -52633328 + AT_rich Low_complexity Low_complexity 1 23 -17 2764 6 0 6 chr15 48747193 48747506 -52633015 + AluYa5 SINE Alu 1 311 0 23 24 0 24 chr15 48747506 48747524 -52632997 + AT_rich Low_complexity Low_complexity 23 40 0 1096 180 23 18 chr15 48747558 48747775 -52632746 - MER20 DNA MER1_type 0 219 2 194 389 0 14 chr15 48749454 48749526 -52630995 + MER5B DNA MER1_type 13 83 -95 189 329 49 0 chr15 48749559 48749641 -52630880 + MER5A DNA MER1_type 83 168 -21 2158 98 0 7 chr15 48750587 48750893 -52629628 + AluSx SINE Alu 1 304 -8 221 265 44 0 chr15 48750996 48751064 -52629457 - MIR SINE MIR -72 190 120 451 301 83 23 chr15 48751071 48751277 -52629244 - MIR SINE MIR -32 230 16 2349 144 8 11 chr15 48752104 48752485 -52628036 + MLT1B LTR MaLR 11 390 0 207 0 0 0 chr15 48752815 48752838 -52627683 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 390 46 2 37 chr15 48752845 48752906 -52627615 - AluY SINE Alu -14 286 235 207 0 0 0 chr15 48753365 48753388 -52627133 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1865 118 0 7 chr15 48753395 48753684 -52626837 - AluY SINE Alu -24 287 1 2135 108 3 0 chr15 48753689 48753994 -52626527 - AluSp SINE Alu -7 306 1 259 258 103 10 chr15 48754050 48754147 -52626374 - MER91A DNA MER1_type 0 196 91 620 272 40 29 chr15 48754147 48754320 -52626201 - MER91A DNA MER1_type -20 176 2 219 139 0 0 chr15 48754935 48754971 -52625550 + (T)n Simple_repeat Simple_repeat 1 36 0 814 134 15 15 chr15 48755033 48755167 -52625354 + AluJo SINE Alu 2 135 -177 1404 179 6 85 chr15 48755167 48755497 -52625024 + AluJb SINE Alu 1 304 -8 207 0 0 0 chr15 48755915 48755938 -52624583 + (TG)n Simple_repeat Simple_repeat 1 23 0 863 154 0 27 chr15 48755945 48756094 -52624427 - FRAM SINE Alu -30 146 2 436 221 159 0 chr15 48756706 48756819 -52623702 + MER58B DNA MER1_type 211 341 0 230 304 70 97 chr15 48756921 48757178 -52623343 - L2 LINE L2 -198 3074 2825 397 267 67 8 chr15 48757188 48757308 -52623213 - L2 LINE L2 0 3313 3187 279 355 121 27 chr15 48760563 48760901 -52619620 - L3 LINE CR1 -22 1555 1186 1495 161 7 21 chr15 48762481 48762791 -52617730 - AluJo SINE Alu 0 306 1 186 224 155 0 chr15 48762792 48762850 -52617671 - L3 LINE CR1 -824 753 687 32 57 0 0 chr15 48763150 48763203 -52617318 + AT_rich Low_complexity Low_complexity 1 53 0 684 189 14 14 chr15 48763942 48764090 -52616431 - AluSg/x SINE Alu 0 312 165 1997 119 0 3 chr15 48765317 48765641 -52614880 - AluSx SINE Alu 0 323 1 297 169 0 28 chr15 48765713 48765784 -52614737 - L1MA7 LINE L1 -2 6289 6221 229 31 0 0 chr15 48766137 48766169 -52614352 + Alu SINE Alu 104 135 -168 2200 92 0 3 chr15 48766169 48766464 -52614057 + AluSg SINE Alu 1 294 -16 246 62 0 0 chr15 48767657 48767689 -52612832 + (GGGTG)n Simple_repeat Simple_repeat 3 34 0 218 203 0 17 chr15 48768309 48768368 -52612153 + GA-rich Low_complexity Low_complexity 3 60 0 393 267 161 37 chr15 48768733 48768763 -52611758 - MIR SINE MIR -79 183 158 503 96 0 24 chr15 48768763 48768846 -52611675 - L1MA4 LINE L1 -4 6296 6216 393 267 161 37 chr15 48768846 48768976 -52611545 - MIR SINE MIR -104 158 3 265 310 23 23 chr15 48769461 48769548 -52610973 + L2 LINE L2 3186 3272 0 326 294 118 87 chr15 48769671 48770062 -52610459 - L2 LINE L2 -4 3268 2866 234 0 0 0 chr15 48770238 48770264 -52610257 + (CA)n Simple_repeat Simple_repeat 2 27 0 469 304 114 5 chr15 48770607 48770808 -52609713 - MIR SINE MIR -16 246 24 470 205 27 9 chr15 48771071 48771183 -52609338 - Charlie8 DNA MER1_type -2184 233 120 292 281 157 38 chr15 48771269 48771479 -52609042 - MIR SINE MIR -15 247 13 372 336 130 0 chr15 48771962 48772108 -52608413 - MIR SINE MIR -78 184 20 215 278 113 31 chr15 48772687 48772784 -52607737 + L2 LINE L2 3132 3236 -36 2287 97 0 0 chr15 48772814 48773125 -52607396 + AluY SINE Alu 1 311 0 328 291 166 40 chr15 48774158 48774333 -52606188 + MIR SINE MIR 63 259 -3 1528 234 30 8 chr15 48775826 48776189 -52604332 + MLT1A2 LTR MaLR 4 374 0 981 251 146 24 chr15 48776497 48776961 -52603560 + L2 LINE L2 2788 3312 -1 675 295 126 44 chr15 48777673 48778148 -52602373 + LTR33 LTR ERVL 3 516 -5 1928 136 27 0 chr15 48778531 48778825 -52601696 - AluJb SINE Alu -10 302 1 588 289 100 0 chr15 48779531 48779711 -52600810 - MIR SINE MIR -37 225 28 245 125 0 0 chr15 48780025 48780065 -52600456 - MER96 DNA MER1_type? -82 93 54 185 277 0 0 chr15 48780278 48780325 -52600196 - L2 LINE L2 -16 3256 3210 2063 118 0 0 chr15 48780400 48780689 -52599832 + AluSx SINE Alu 1 289 -23 1892 108 57 20 chr15 48781279 48781576 -52598945 + AluSc SINE Alu 1 308 -1 754 303 14 23 chr15 48781843 48782064 -52598457 + MIR SINE MIR 41 259 -3 1883 142 3 7 chr15 48782384 48782687 -52597834 - AluSc SINE Alu -7 302 1 22 0 0 0 chr15 48782687 48782709 -52597812 + AT_rich Low_complexity Low_complexity 1 22 0 341 355 120 0 chr15 48782947 48783008 -52597513 - MIR SINE MIR -38 224 172 1563 167 61 0 chr15 48783008 48783302 -52597219 + AluJo SINE Alu 1 312 0 341 355 120 0 chr15 48783302 48783423 -52597098 - MIR SINE MIR -90 172 20 470 258 0 8 chr15 48783440 48783564 -52596957 - L1MA10 LINE L1 -2 6332 6210 378 272 0 22 chr15 48783582 48783674 -52596847 + L1MC4 LINE L1 6614 6703 -1339 * 393 289 0 0 chr15 48783618 48783708 -52596813 - L1MC4 LINE L1 -1339 6703 6614 2330 81 0 0 chr15 48784233 48784529 -52595992 - AluSx SINE Alu -16 296 1 189 196 157 88 chr15 48785935 48786037 -52594484 + MIR3 SINE MIR 1 109 -99 1597 196 3 17 chr15 48786038 48786329 -52594192 + AluJo SINE Alu 1 287 -25 1509 207 15 21 chr15 48786410 48786739 -52593782 + MLT1A1 LTR MaLR 4 330 -35 21 0 0 0 chr15 48786766 48786787 -52593734 + AT_rich Low_complexity Low_complexity 1 21 0 349 180 150 0 chr15 48787124 48787224 -52593297 - L2 LINE L2 -20 3293 3179 1926 155 7 3 chr15 48787286 48787576 -52592945 - AluJb SINE Alu -21 291 1 277 266 16 0 chr15 48787615 48787679 -52592842 - L1MCa LINE L1 -5731 695 631 334 274 86 26 chr15 48788060 48788177 -52592344 + MER63 DNA MER1_type 1 750 -86 330 259 0 12 chr15 48788179 48788264 -52592257 + MER63 DNA MER1_type 979 1062 0 2644 175 91 12 chr15 48789165 48789684 -52590837 - MER68 LTR ERV1 -2 560 1 280 252 117 0 chr15 48789914 48790017 -52590504 - MIR SINE MIR -70 192 78 271 315 18 36 chr15 48790026 48790137 -52590384 - MIR3 SINE MIR -18 190 82 280 282 10 39 chr15 48791068 48791171 -52589350 + MIR SINE MIR 113 212 -50 194 260 20 0 chr15 48791198 48791248 -52589273 - MIR SINE MIR -95 167 117 264 158 0 88 chr15 48792151 48792208 -52588313 + MIR SINE MIR 57 108 -154 286 214 29 0 chr15 48792930 48793000 -52587521 + MIR SINE MIR 77 148 -60 185 267 67 13 chr15 48793542 48793617 -52586904 - MIR3 SINE MIR -49 159 81 289 297 73 24 chr15 48793730 48793895 -52586626 - MIR SINE MIR -14 248 76 269 320 163 7 chr15 48794675 48794822 -52585699 - MIR SINE MIR -85 177 8 301 278 40 26 chr15 48796279 48796430 -52584091 + MIR SINE MIR 70 222 -40 667 150 84 84 chr15 48796603 48796740 -52583781 + MLT1B LTR MaLR 1 140 -250 2326 99 3 0 chr15 48796740 48797034 -52583487 - AluSq SINE Alu -17 296 2 667 150 84 84 chr15 48797034 48797063 -52583458 + MLT1B LTR MaLR 139 167 -223 1713 210 19 43 chr15 48797206 48797667 -52582854 + L1ME2 LINE L1 5700 6149 -15 1030 185 0 11 chr15 48797886 48798064 -52582457 - FRAM SINE Alu 0 176 1 1998 119 0 0 chr15 48798146 48798407 -52582114 + AluSx SINE Alu 1 261 -51 7163 63 2 17 chr15 48798551 48799468 -52581053 + SVA Other Other 483 1385 -1 234 0 0 0 chr15 48799489 48799515 -52581006 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1867 107 4 0 chr15 48800206 48800459 -52580062 + AluSp SINE Alu 1 254 -59 185 222 0 0 chr15 48800966 48801002 -52579519 + L2 LINE L2 3264 3299 -14 22 65 0 0 chr15 48802412 48802443 -52578078 + AT_rich Low_complexity Low_complexity 1 31 0 27 49 0 0 chr15 48802587 48802628 -52577893 + GC_rich Low_complexity Low_complexity 1 41 0 537 332 109 12 chr15 48803125 48803862 -52576659 + L1ME LINE L1 4210 5028 -1118 554 258 69 74 chr15 48803924 48804175 -52576346 + L1ME LINE L1 5268 5522 -744 2770 22 0 3 chr15 48804175 48804486 -52576035 + AluY SINE Alu 1 310 -1 554 258 69 74 chr15 48804486 48804571 -52575950 + L1ME LINE L1 5522 5606 -660 259 153 188 35 chr15 48804612 48804697 -52575824 + L1ME LINE L1 5693 5790 -331 26 64 0 0 chr15 48805061 48805108 -52575413 + AT_rich Low_complexity Low_complexity 1 47 0 2496 224 95 27 chr15 48805222 48806003 -52574518 - L1ME3A LINE L1 -5 6165 5332 881 267 118 18 chr15 48806009 48806339 -52574182 - HAL1 LINE L1 -2135 372 10 * 1031 221 50 4 chr15 48806332 48806590 -52573931 - L1ME3A LINE L1 -870 5276 5007 623 141 99 8 chr15 48806601 48806722 -52573799 - FLAM_C SINE Alu 0 133 2 852 151 0 41 chr15 48806751 48806801 -52573720 - FLAM_A SINE Alu -169 142 91 3987 75 87 5 chr15 48806801 48807365 -52573156 + LTR66 LTR ERVL 1 610 0 852 151 0 41 chr15 48807365 48807460 -52573061 - FLAM_A SINE Alu -220 91 3 517 192 32 26 chr15 48807477 48807688 -52572833 - L1M4c LINE L1 -3927 2489 2237 2213 153 23 8 chr15 48807757 48808149 -52572372 - L1M4 LINE L1 -414 6581 6184 2104 212 33 25 chr15 48808250 48808408 -52572113 - L1M4 LINE L1 -994 5963 5808 1539 217 27 0 chr15 48808408 48808703 -52571818 - AluJo SINE Alu -8 304 2 2104 212 33 25 chr15 48808703 48809062 -52571459 - L1M4 LINE L1 -1149 5808 5442 * 2130 136 33 32 chr15 48809057 48809502 -52571019 - L1MCa LINE L1 -3908 3049 2602 5140 247 87 27 chr15 48809510 48810971 -52569550 - L1MCa LINE L1 -5310 1549 2 1469 133 41 7 chr15 48811568 48811839 -52568682 - AluY SINE Alu -11 300 21 576 298 144 14 chr15 48812450 48812902 -52567619 + MLT1K LTR MaLR 44 580 -8 2361 77 20 0 chr15 48812994 48813291 -52567230 + AluSc SINE Alu 1 303 -6 1822 144 82 3 chr15 48813496 48813815 -52566706 - MER7A DNA MER2_type -1 345 4 192 223 85 77 chr15 48816628 48816758 -52563763 + MIR SINE MIR 80 210 -52 285 29 0 0 chr15 48816910 48816944 -52563577 + (TG)n Simple_repeat Simple_repeat 2 35 0 297 286 26 0 chr15 48818836 48818913 -52561608 - MIR3 SINE MIR -15 193 115 2182 103 17 0 chr15 48819437 48819728 -52560793 - AluSx SINE Alu -16 296 1 180 111 0 0 chr15 48820480 48820507 -52560014 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 334 104 45 90 chr15 48821942 48822009 -52558512 + MER3 DNA MER1_type 41 104 -105 1991 98 76 0 chr15 48822469 48822744 -52557777 - AluSq SINE Alu -17 296 1 1554 84 0 0 chr15 48822757 48822948 -52557573 - AluSq SINE Alu -48 265 75 2493 87 0 0 chr15 48823025 48823335 -52557186 + AluY SINE Alu 1 310 -1 304 276 65 32 chr15 48823580 48823703 -52556818 + L2 LINE L2 3137 3263 -9 400 266 46 0 chr15 48823802 48823911 -52556610 + L2 LINE L2 3192 3305 -8 2474 85 0 16 chr15 48825246 48825564 -52554957 + AluSq SINE Alu 1 313 0 25 51 0 0 chr15 48825756 48825795 -52554726 + AT_rich Low_complexity Low_complexity 1 39 0 2017 144 0 10 chr15 48826518 48826817 -52553704 + AluSx SINE Alu 1 296 -16 2496 68 0 0 chr15 48827804 48828099 -52552422 + AluY SINE Alu 1 295 -16 216 0 0 0 chr15 48828865 48828889 -52551632 + (A)n Simple_repeat Simple_repeat 1 24 0 471 246 110 59 chr15 48829483 48829719 -52550802 + MIR SINE MIR 15 262 0 1154 73 0 0 chr15 48829903 48830054 -52550467 - L1PA4 LINE L1 0 6155 6005 2384 109 3 0 chr15 48830794 48831105 -52549416 + AluSx SINE Alu 1 312 0 27 0 0 0 chr15 48832041 48832068 -52548453 + AT_rich Low_complexity Low_complexity 1 27 0 2007 140 20 0 chr15 48832481 48832774 -52547747 - AluJo SINE Alu -13 299 1 22 0 0 0 chr15 48832890 48832912 -52547609 + AT_rich Low_complexity Low_complexity 1 22 0 1232 120 10 0 chr15 48833614 48833806 -52546715 + L1MB3 LINE L1 5983 6176 -7 1669 188 3 10 chr15 48834498 48834786 -52545735 + AluJo SINE Alu 1 286 -26 23 33 0 0 chr15 48835080 48835110 -52545411 + AT_rich Low_complexity Low_complexity 1 30 0 2039 261 114 19 chr15 48835255 48836242 -52544279 + L2 LINE L2 2216 3313 0 193 289 0 0 chr15 48836770 48836815 -52543706 + MER5B DNA MER1_type 1 45 -133 1051 204 0 52 chr15 48836815 48837045 -52543476 - AluJo SINE Alu -16 296 79 201 74 0 0 chr15 48837048 48837075 -52543446 + (T)n Simple_repeat Simple_repeat 1 27 0 451 256 8 32 chr15 48837075 48837200 -52543321 - MER5B DNA MER1_type -50 128 7 26 50 0 0 chr15 48838258 48838298 -52542223 + AT_rich Low_complexity Low_complexity 1 40 0 658 189 82 0 chr15 48839333 48839492 -52541029 - MER104 DNA Tc2 -6 174 3 2129 129 0 3 chr15 48839754 48840056 -52540465 + AluSp SINE Alu 1 301 -12 517 170 80 6 chr15 48840125 48840284 -52540237 + MSTD LTR MaLR 185 393 -3 308 252 213 13 chr15 48840511 48840666 -52539855 + MIR3 SINE MIR 20 205 -3 329 269 0 0 chr15 48841597 48841690 -52538831 - MARNA DNA Mariner -8 578 486 633 284 53 82 chr15 48841729 48842084 -52538437 - L2 LINE L2 0 3272 2928 235 182 0 0 chr15 48842128 48842172 -52538349 - MARNA DNA Mariner -199 387 344 2415 89 7 0 chr15 48842310 48842614 -52537907 + AluSg SINE Alu 1 306 -4 252 342 76 0 chr15 48842856 48842935 -52537586 + L2 LINE L2 3141 3225 -47 285 154 231 0 chr15 48843009 48843074 -52537447 - MADE1 DNA Mariner 0 80 1 895 266 10 0 chr15 48843074 48843266 -52537255 - MIR SINE MIR -67 195 2 251 291 0 0 chr15 48843266 48843320 -52537201 + L2 LINE L2 3214 3267 -5 22 0 0 0 chr15 48845030 48845052 -52535469 + AT_rich Low_complexity Low_complexity 1 22 0 183 204 0 0 chr15 48846591 48846635 -52533886 + A-rich Low_complexity Low_complexity 1 44 0 2143 116 0 17 chr15 48847737 48848038 -52532483 + AluSq SINE Alu 1 296 -17 1974 142 10 13 chr15 48849149 48849451 -52531070 + AluJb SINE Alu 1 301 -11 2344 96 0 3 chr15 48849706 48850007 -52530514 + AluSx SINE Alu 1 300 -12 526 246 188 22 chr15 48850963 48851187 -52529334 - MIR SINE MIR -1 261 1 1027 303 71 36 chr15 48851203 48851849 -52528672 + L2 LINE L2 2128 2796 -518 450 321 9 0 chr15 48851843 48851949 -52528572 + L2 LINE L2 3138 3244 -28 * 1403 157 53 90 chr15 48852131 48852373 -52528148 + MER2 DNA MER2_type 1 227 -117 2235 108 3 10 chr15 48852373 48852687 -52527834 + AluSq SINE Alu 1 312 -1 1403 157 53 90 chr15 48852687 48852801 -52527720 + MER2 DNA MER2_type 227 344 0 32 26 0 0 chr15 48853842 48853881 -52526640 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr15 48854161 48854183 -52526338 + AT_rich Low_complexity Low_complexity 1 22 0 358 126 0 105 chr15 48854329 48854424 -52526097 + L1PA8 LINE L1 6081 6165 -7 308 22 0 22 chr15 48856730 48856776 -52523745 + L1MA7 LINE L1 6239 6283 -8 2383 67 0 0 chr15 48857021 48857305 -52523216 - AluY SINE Alu -27 284 1 256 273 49 49 chr15 48857778 48857921 -52522600 - L3 LINE CR1 -122 1455 1313 29 28 0 0 chr15 48858022 48858058 -52522463 + AT_rich Low_complexity Low_complexity 1 36 0 2497 77 0 6 chr15 48859573 48859885 -52520636 + AluY SINE Alu 1 310 -1 1038 180 5 16 chr15 48860074 48860263 -52520258 - MER5A DNA MER1_type -1 188 2 1055 256 95 50 chr15 48861142 48861647 -52518874 + L1ME4a LINE L1 5285 5857 -264 2238 113 0 0 chr15 48861647 48861947 -52518574 + AluSg SINE Alu 1 300 -10 1055 256 95 50 chr15 48861947 48862223 -52518298 + L1ME4a LINE L1 5857 6119 -2 338 153 0 34 chr15 48862330 48862389 -52518132 - MER2 DNA MER2_type -10 335 279 21 36 0 0 chr15 48862710 48862738 -52517783 + AT_rich Low_complexity Low_complexity 1 28 0 1112 126 44 0 chr15 48862761 48862943 -52517578 - MER2 DNA MER2_type -155 190 1 337 240 212 14 chr15 48863345 48863491 -52517030 - L1ME4a LINE L1 -4 6117 5943 264 320 8 31 chr15 48863570 48863698 -52516823 - L1ME4a LINE L1 -316 5805 5681 26 0 0 0 chr15 48863789 48863815 -52516706 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr15 48863874 48863897 -52516624 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr15 48864526 48864549 -52515972 + (A)n Simple_repeat Simple_repeat 1 23 0 671 214 94 14 chr15 48865496 48865740 -52514781 + MLT1H LTR MaLR 12 302 -293 318 212 161 63 chr15 48865778 48865922 -52514599 + MLT1H1 LTR MaLR 415 553 -2 428 257 35 18 chr15 48866038 48866151 -52514370 + MIR SINE MIR 2 116 -146 21 0 0 0 chr15 48866325 48866346 -52514175 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr15 48866677 48866718 -52513803 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr15 48866802 48866825 -52513696 + AT_rich Low_complexity Low_complexity 1 23 0 342 256 103 0 chr15 48868638 48868755 -52511766 + MIR SINE MIR 124 252 -10 180 349 53 30 chr15 48869063 48869195 -52511326 + L2 LINE L2 1057 1191 -2123 296 245 39 20 chr15 48869997 48870099 -52510422 - MER103 DNA DNA -54 112 9 2437 87 0 3 chr15 48871030 48871339 -52509182 + AluSc SINE Alu 1 308 -1 523 215 44 70 chr15 48871395 48871623 -52508898 + L1MC5 LINE L1 7724 7945 -16 21 36 0 0 chr15 48871940 48871968 -52508553 + AT_rich Low_complexity Low_complexity 1 28 0 322 297 63 0 chr15 48872676 48872787 -52507734 + L2 LINE L2 3155 3272 0 198 0 0 0 chr15 48873703 48873725 -52506796 + (A)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chr15 48873829 48873852 -52506669 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr15 48873992 48874020 -52506501 + AT_rich Low_complexity Low_complexity 1 28 0 602 60 0 0 chr15 48874858 48874942 -52505579 + L1MB3 LINE L1 6085 6168 -15 405 0 0 0 chr15 48874944 48874989 -52505532 + (CA)n Simple_repeat Simple_repeat 2 46 0 180 235 59 15 chr15 48875430 48875498 -52505023 - MER5B DNA MER1_type -17 161 91 644 172 8 25 chr15 48875696 48875818 -52504703 + FLAM_C SINE Alu 1 120 -13 878 73 89 0 chr15 48876733 48876857 -52503664 - MER85 DNA T2_type -4 135 1 207 0 0 0 chr15 48876943 48876966 -52503555 + (T)n Simple_repeat Simple_repeat 1 23 0 1963 173 3 3 chr15 48877904 48878210 -52502311 + AluJo SINE Alu 1 306 -6 1625 152 68 0 chr15 48878680 48878997 -52501524 + AluJo SINE Alu 2 336 0 181 376 43 11 chr15 48880287 48880380 -52500141 + L3 LINE CR1 1417 1512 -65 297 0 0 0 chr15 48881028 48881061 -52499460 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1679 218 75 27 chr15 48881473 48881955 -52498566 + MLT1D LTR MaLR 1 505 0 752 258 0 0 chr15 48882077 48882228 -52498293 + FRAM SINE Alu 6 156 -20 21 0 0 0 chr15 48882228 48882249 -52498272 + AT_rich Low_complexity Low_complexity 1 21 0 2191 107 3 3 chr15 48884215 48884506 -52496015 + AluSc SINE Alu 1 291 -18 1974 154 3 0 chr15 48884645 48884944 -52495577 - AluSx SINE Alu -12 300 1 2296 85 17 0 chr15 48885314 48885608 -52494913 + AluSg SINE Alu 1 299 -11 903 150 150 0 chr15 48885851 48886011 -52494510 + MER5A DNA MER1_type 1 184 -5 2205 127 0 0 chr15 48887228 48887527 -52492994 + AluSx SINE Alu 2 300 -12 2261 77 0 3 chr15 48887559 48887845 -52492676 + AluSg SINE Alu 1 285 -25 493 208 135 45 chr15 48888547 48888792 -52491729 + L1ME4a LINE L1 5616 5882 -239 180 0 0 0 chr15 48888837 48888857 -52491664 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 243 0 0 0 chr15 48888856 48888883 -52491638 + (CA)n Simple_repeat Simple_repeat 1 27 0 287 163 47 93 chr15 48888931 48888967 -52491554 + L1ME4a LINE L1 5996 6032 -89 2287 107 3 0 chr15 48888967 48889275 -52491246 - AluSq SINE Alu -4 309 1 287 163 47 93 chr15 48889275 48889367 -52491154 + L1ME4a LINE L1 6032 6118 -3 1936 125 28 3 chr15 48889369 48889657 -52490864 + AluSq SINE Alu 1 295 -18 364 268 12 0 chr15 48892339 48892421 -52488100 - MIR SINE MIR -68 194 112 23 0 0 0 chr15 48892637 48892660 -52487861 + AT_rich Low_complexity Low_complexity 1 23 0 1807 129 36 18 chr15 48893108 48893416 -52487105 + AluJb SINE Alu 1 313 0 1859 164 10 3 chr15 48893628 48893921 -52486600 - AluJb SINE Alu -17 295 1 311 255 161 0 chr15 48894587 48894714 -52485807 + MIR SINE MIR 6 162 -46 827 263 68 29 chr15 48895809 48896117 -52484404 - MER46C DNA MER2_type 0 338 19 2163 128 0 3 chr15 48896745 48897049 -52483472 + AluSp SINE Alu 1 303 -10 2272 77 114 19 chr15 48897109 48897486 -52483035 + L1MA2 LINE L1 5892 6304 0 2085 132 6 10 chr15 48897623 48897934 -52482587 - AluJb SINE Alu -2 310 1 569 331 60 33 chr15 48898029 48898395 -52482126 - L1MC/D LINE L1 -2053 5755 5380 450 286 155 36 chr15 48899788 48900040 -52480481 - L2 LINE L2 -1 3312 3031 2357 104 0 0 chr15 48900460 48900768 -52479753 - AluY SINE Alu -3 308 1 551 215 60 35 chr15 48902090 48902290 -52478231 - HAL1 LINE L1 -6 2501 2297 867 252 34 13 chr15 48902611 48902845 -52477676 - MIR SINE MIR -22 240 2 426 352 114 39 chr15 48904818 48905150 -52475371 - L2 LINE L2 0 3272 2916 313 317 28 31 chr15 48905501 48905647 -52474874 - MIR3 SINE MIR -76 132 7 2332 90 0 37 chr15 48905783 48906105 -52474416 + AluSx SINE Alu 1 310 -2 299 303 69 16 chr15 48906187 48906375 -52474146 - L1MEd LINE L1 -3530 2599 2402 738 205 63 0 chr15 48906392 48906519 -52474002 - FRAM SINE Alu -30 146 12 234 330 73 0 chr15 48906537 48906716 -52473805 - L1MEd LINE L1 -3735 2394 2203 1983 123 70 35 chr15 48906727 48907124 -52473397 - L1PA16 LINE L1 0 6166 5756 1506 214 135 12 chr15 48907440 48907940 -52472581 - L1MC4 LINE L1 -8 7987 7284 575 298 43 44 chr15 48908027 48908151 -52472370 - L1MEd LINE L1 -4616 1694 1571 2061 136 10 0 chr15 48908151 48908446 -52472075 - AluSx SINE Alu -14 298 1 575 298 43 44 chr15 48908446 48909015 -52471506 - L1MEd LINE L1 -4739 1571 967 606 307 82 45 chr15 48909046 48909583 -52470938 - L1MEd LINE L1 -5353 766 210 2293 100 0 0 chr15 48909639 48909969 -52470552 + AluSx SINE Alu 1 330 0 2205 197 56 0 chr15 48910334 48910796 -52469725 + L1MB8 LINE L1 5685 6172 -6 2223 102 3 29 chr15 48911053 48911367 -52469154 + AluSq SINE Alu 1 306 -7 342 0 0 0 chr15 48912128 48912166 -52468355 + (CA)n Simple_repeat Simple_repeat 1 38 0 548 310 59 35 chr15 48912641 48912896 -52467625 + MIR SINE MIR 2 262 0 577 146 0 0 chr15 48913339 48913428 -52467093 - AluY SINE Alu -10 301 213 409 282 176 8 chr15 48913489 48913620 -52466901 - MER5A DNA MER1_type 0 189 37 702 180 93 0 chr15 48914080 48914230 -52466291 - L1MB7 LINE L1 -10 6174 6011 47 0 0 0 chr15 48914615 48914662 -52465859 + AT_rich Low_complexity Low_complexity 1 47 0 509 236 0 69 chr15 48914842 48915045 -52465476 - L1MC5 LINE L1 -51 7910 7722 21 36 0 0 chr15 48915278 48915306 -52465215 + AT_rich Low_complexity Low_complexity 1 28 0 2258 80 35 0 chr15 48917665 48917952 -52462569 - AluSg SINE Alu -13 297 1 221 329 150 36 chr15 48919495 48919662 -52460859 + MIR3 SINE MIR 17 202 -6 2336 108 3 0 chr15 48919943 48920248 -52460273 + AluSq SINE Alu 1 306 -7 738 134 0 84 chr15 48920258 48920400 -52460121 + FLAM_C SINE Alu 1 130 -3 2210 139 55 44 chr15 48921023 48921475 -52459046 + MSTB2 LTR MaLR 1 457 0 22 0 0 0 chr15 48923383 48923405 -52457116 + AT_rich Low_complexity Low_complexity 1 22 0 361 70 70 0 chr15 48923441 48923498 -52457023 + HERV15 LTR ERV1 2687 2747 -5988 307 160 0 0 chr15 48923498 48923548 -52456973 + tRNA-Ile-ATT tRNA tRNA 28 77 0 3297 70 23 13 chr15 48923581 48924053 -52456468 - LTR15 LTR ERV1 -16 477 1 1690 213 61 5 chr15 48924619 48924994 -52455527 + MSTD LTR MaLR 1 396 0 327 301 98 55 chr15 48925072 48925255 -52455266 - L2 LINE L2 -219 3053 2863 214 255 0 0 chr15 48925415 48925466 -52455055 - L2 LINE L2 0 3313 3263 342 80 0 0 chr15 48925799 48925849 -52454672 + (GA)n Simple_repeat Simple_repeat 2 51 0 236 393 88 4 chr15 48925958 48926230 -52454291 - L3 LINE CR1 -742 835 541 24 0 0 0 chr15 48926631 48926655 -52453866 + AT_rich Low_complexity Low_complexity 1 24 0 1849 196 15 35 chr15 48927008 48927102 -52453419 + MSTD LTR MaLR 1 95 -301 1955 174 3 0 chr15 48927102 48927401 -52453120 + AluJb SINE Alu 1 300 -12 1849 196 15 35 chr15 48927401 48927710 -52452811 + MSTD LTR MaLR 95 396 0 300 293 273 25 chr15 48927938 48928136 -52452385 + MIR SINE MIR 13 259 -3 238 357 31 19 chr15 48928515 48928702 -52451819 - MIR SINE MIR -40 222 33 304 353 42 0 chr15 48928844 48928963 -52451558 - MIR3 SINE MIR -43 165 42 933 225 81 75 chr15 48929415 48929775 -52450746 + L2 LINE L2 2313 2674 -640 1361 181 16 40 chr15 48929797 48930100 -52450421 - AluJo SINE Alu -5 297 2 379 272 68 10 chr15 48930128 48930231 -52450290 + L2 LINE L2 3203 3311 -2 2499 66 0 0 chr15 48930349 48930650 -52449871 + AluY SINE Alu 1 301 -10 700 267 92 0 chr15 48931395 48931601 -52448920 + MIR SINE MIR 38 262 0 26 0 0 0 chr15 48931611 48931637 -52448884 + AT_rich Low_complexity Low_complexity 1 26 0 784 189 0 0 chr15 48932052 48932179 -52448342 + FLAM_A SINE Alu 1 127 -6 270 323 32 21 chr15 48932237 48932330 -52448191 + MIR SINE MIR 48 141 -67 2186 113 0 0 chr15 48932426 48932738 -52447783 - AluSx SINE Alu 0 312 1 486 248 52 64 chr15 48933281 48933531 -52446990 + L1ME4a LINE L1 5569 5815 -306 1713 163 21 14 chr15 48933543 48933831 -52446690 - AluJb SINE Alu -16 296 7 239 222 111 28 chr15 48933943 48934051 -52446470 - L2 LINE L2 -167 3146 3030 230 204 333 15 chr15 48934053 48934254 -52446267 + L1ME4a LINE L1 5817 6081 -40 712 229 45 96 chr15 48934282 48934596 -52445925 - L2 LINE L2 -2 3311 3014 219 267 27 0 chr15 48934840 48934915 -52445606 + A-rich Low_complexity Low_complexity 5 81 0 189 200 0 0 chr15 48935129 48935164 -52445357 + L2 LINE L2 2125 2159 -1155 442 272 149 41 chr15 48935979 48936174 -52444347 + MIR SINE MIR 1 216 -46 1090 104 0 0 chr15 48936350 48936485 -52444036 + AluSq/x SINE Alu 1 135 -178 1991 77 7 64 chr15 48936485 48936783 -52443738 + AluSx SINE Alu 1 281 -31 2186 100 0 0 chr15 48936926 48937248 -52443273 - AluSx SINE Alu 0 322 1 843 120 8 8 chr15 48937248 48937373 -52443148 - AluJo SINE Alu -177 135 11 639 254 136 30 chr15 48938173 48938409 -52442112 + L1MC4a LINE L1 6336 6596 -1212 2275 121 0 0 chr15 48938429 48938726 -52441795 + AluSx SINE Alu 1 297 -15 730 179 0 8 chr15 48938731 48938848 -52441673 + FLAM_C SINE Alu 7 122 -21 236 175 35 18 chr15 48938853 48938910 -52441611 + (CATA)n Simple_repeat Simple_repeat 3 60 0 1901 208 96 61 chr15 48938940 48939183 -52441338 + L1MC4a LINE L1 6571 6804 -1188 1567 141 115 7 chr15 48939183 48939452 -52441069 + AluJo SINE Alu 1 298 -14 1901 208 96 61 chr15 48939452 48939914 -52440607 + L1MC4a LINE L1 6804 7476 -516 555 277 43 62 chr15 48939927 48940183 -52440338 + MIR SINE MIR 2 252 -10 2364 107 0 3 chr15 48940897 48941205 -52439316 - AluSq SINE Alu -6 307 1 2427 91 0 0 chr15 48941473 48941781 -52438740 - AluSg SINE Alu -2 308 1 894 244 127 13 chr15 48941930 48942237 -52438284 + Tigger8 DNA MER2_type 241 582 -84 2308 87 0 35 chr15 48942749 48943060 -52437461 - AluSc SINE Alu -9 300 1 2099 107 3 41 chr15 48943396 48943713 -52436808 - AluSq SINE Alu -8 305 1 774 304 93 48 chr15 48943733 48944217 -52436304 + L2 LINE L2 2777 3308 -5 2281 118 0 0 chr15 48944796 48945100 -52435421 + AluSx SINE Alu 1 304 -8 6515 57 13 8 chr15 48945976 48946752 -52433769 + LTR17 LTR ERV1 1 780 0 2351 115 0 0 chr15 48947739 48948051 -52432470 - AluSx SINE Alu 0 312 1 186 103 0 0 chr15 48948797 48948826 -52431695 + (TG)n Simple_repeat Simple_repeat 2 30 0 249 239 0 0 chr15 48948848 48948894 -52431627 - L1MC5 LINE L1 -73 7888 7843 529 316 18 37 chr15 48948963 48949181 -52431340 + L2 LINE L2 2844 3057 -215 294 279 12 12 chr15 48950016 48950102 -52430419 - MIR SINE MIR -6 256 171 2120 103 30 17 chr15 48950234 48950534 -52429987 - AluY SINE Alu -7 304 1 1964 104 11 0 chr15 48950948 48951208 -52429313 + AluSg SINE Alu 35 297 -13 1826 124 4 11 chr15 48951216 48951483 -52429038 + AluSx SINE Alu 35 299 -13 21 57 0 0 chr15 48951589 48951624 -52428897 + AT_rich Low_complexity Low_complexity 1 35 0 393 225 0 45 chr15 48951974 48952063 -52428458 - MIR SINE MIR -148 114 30 2284 148 88 15 chr15 48952559 48952958 -52427563 + MSTA LTR MaLR 1 428 0 9694 166 24 10 chr15 48952959 48954587 -52425934 + MSTA-int LTR MaLR 2 1651 0 2037 156 130 16 chr15 48954587 48954971 -52425550 + MSTA LTR MaLR 1 428 0 2655 139 0 5 chr15 48954971 48955387 -52425134 + MSTA-int LTR MaLR 1 414 -1237 * 3934 143 62 41 chr15 48955363 48956069 -52424452 + MSTA-int LTR MaLR 860 1580 0 1794 167 152 0 chr15 48956069 48956417 -52424104 + MSTA LTR MaLR 1 401 -27 2591 77 0 0 chr15 48956441 48956752 -52423769 - AluSx SINE Alu -1 311 1 280 93 0 47 chr15 48956752 48956795 -52423726 + MSTA LTR MaLR 388 428 0 201 348 14 51 chr15 48957040 48957178 -52423343 + L2 LINE L2 2031 2163 -1151 1799 180 0 7 chr15 48957202 48957496 -52423025 + AluJb SINE Alu 2 293 -19 731 165 8 16 chr15 48957520 48957641 -52422880 + FLAM_A SINE Alu 1 120 -13 475 234 37 0 chr15 48957710 48957817 -52422704 + MIR SINE MIR 136 246 -16 23 33 0 0 chr15 48957831 48957861 -52422660 + AT_rich Low_complexity Low_complexity 1 30 0 1999 140 10 7 chr15 48957868 48958168 -52422353 + AluSx SINE Alu 1 301 -11 761 195 17 0 chr15 48958168 48958286 -52422235 - AluJo/FLAM SINE Alu -182 120 1 694 120 0 0 chr15 48958327 48958427 -52422094 - AluJb SINE Alu -8 304 205 952 291 119 63 chr15 48958450 48959475 -52421046 + L2 LINE L2 2185 3272 0 3653 161 32 11 chr15 48959569 48960184 -52420337 + L1MA4A LINE L1 1250 1877 -4688 1141 142 0 0 chr15 48960184 48960346 -52420175 + AluSg/x SINE Alu 134 295 -15 15846 173 29 22 chr15 48960347 48964591 -52415930 + L1MA4A LINE L1 2428 6640 -1082 180 0 0 0 chr15 48964591 48964611 -52415910 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 15846 173 29 22 chr15 48964611 48964643 -52415878 + L1MA4A LINE L1 6640 6670 -1052 1734 136 79 4 chr15 48964643 48964923 -52415598 + AluJb SINE Alu 1 301 -11 15846 173 29 22 chr15 48964923 48965777 -52414744 + L1MA4A LINE L1 6670 7599 -123 1318 164 25 127 chr15 48965777 48966131 -52414390 + AluYb8 SINE Alu 1 318 0 15846 173 29 22 chr15 48966131 48966256 -52414265 + L1MA4A LINE L1 7599 7722 0 230 322 17 25 chr15 48966357 48966475 -52414046 + L1ME LINE L1 5492 5608 -513 892 107 0 8 chr15 48966501 48966622 -52413899 - AluSg/x SINE Alu -30 279 160 9715 65 3 101 chr15 48966641 48968164 -52412357 - SVA Other Other 0 1386 12 28 61 0 0 chr15 48968324 48968373 -52412148 + AT_rich Low_complexity Low_complexity 1 49 0 1933 152 7 3 chr15 48968439 48968736 -52411785 - AluJb SINE Alu -14 298 1 2221 105 0 14 chr15 48969164 48969460 -52411061 + AluSg SINE Alu 1 292 -18 2423 64 0 10 chr15 48969465 48969763 -52410758 + AluY SINE Alu 1 295 -16 21 0 0 0 chr15 48969798 48969819 -52410702 + AT_rich Low_complexity Low_complexity 1 21 0 2160 115 7 0 chr15 48970049 48970345 -52410176 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr15 48970951 48970973 -52409548 + AT_rich Low_complexity Low_complexity 1 22 0 537 287 92 0 chr15 48971456 48971620 -52408901 + MIR SINE MIR 18 196 -66 428 323 210 32 chr15 48971707 48972121 -52408400 + L2 LINE L2 2783 3267 -5 302 339 79 0 chr15 48972162 48972289 -52408232 - L2 LINE L2 -494 2820 2684 943 170 0 0 chr15 48973013 48973160 -52407361 + FRAM SINE Alu 20 166 -10 1039 271 61 80 chr15 48973221 48973887 -52406634 + L1PA15-16 LINE L1 1 631 -6218 3502 212 33 12 chr15 48974298 48975428 -52405093 + L1M2 LINE L1 1081 2515 -4334 676 169 51 9 chr15 48975551 48975806 -52404715 + AluJ SINE Alu 1 301 -11 415 281 27 45 chr15 48975806 48975859 -52404662 + L1MC4a LINE L1 5387 5439 -2369 1669 185 0 38 chr15 48975859 48976173 -52404348 + AluJo SINE Alu 1 302 -10 415 281 27 45 chr15 48976173 48976340 -52404181 + L1MC4a LINE L1 5439 5603 -2205 309 281 62 0 chr15 48976435 48976595 -52403926 + L1MC4a LINE L1 5576 5745 -376 10290 128 14 27 chr15 48976644 48977853 -52402668 - Tigger2 DNA MER2_type 0 2718 1495 2117 89 7 17 chr15 48977853 48978146 -52402375 + AluSp SINE Alu 1 290 -23 10290 128 14 27 chr15 48978146 48978224 -52402297 - Tigger2 DNA MER2_type -1223 1495 1418 2323 106 0 0 chr15 48978224 48978535 -52401986 + AluSx SINE Alu 1 311 -1 10290 128 14 27 chr15 48978535 48978805 -52401716 - Tigger2 DNA MER2_type -1300 1418 1178 1473 141 104 63 chr15 48978805 48979076 -52401445 + AluJo SINE Alu 1 287 -25 396 0 0 0 chr15 48979076 48979120 -52401401 + (CA)n Simple_repeat Simple_repeat 2 45 0 1473 141 104 63 chr15 48979120 48979147 -52401374 + AluJo SINE Alu 287 311 -1 10290 128 14 27 chr15 48979147 48979192 -52401329 - Tigger2 DNA MER2_type -1540 1178 1134 1615 188 0 4 chr15 48979216 48979488 -52401033 - AluJb SINE Alu -32 280 10 622 71 0 0 chr15 48979495 48979579 -52400942 - Tigger2 DNA MER2_type -1568 1150 1067 2324 77 0 7 chr15 48979579 48979877 -52400644 - AluY SINE Alu -15 296 1 42556 62 2 4 chr15 48979897 48986059 -52394462 - L1PA5 LINE L1 -4 6150 1 718 111 0 19 chr15 48986065 48986173 -52394348 - Tigger2 DNA MER2_type -1648 1070 965 * 3355 131 46 38 chr15 48986172 48986500 -52394021 - Tigger2 DNA MER2_type -2127 591 254 1964 116 65 0 chr15 48986500 48986776 -52393745 - AluSx SINE Alu -18 294 1 3355 131 46 38 chr15 48986776 48987033 -52393488 - Tigger2 DNA MER2_type -2464 254 1 315 211 194 29 chr15 48987046 48987213 -52393308 + L1MC4a LINE L1 5775 5967 -154 380 111 63 0 chr15 48987574 48987637 -52392884 + L1MA9 LINE L1 6244 6310 -2 255 253 194 29 chr15 48987891 48988061 -52392460 - MIR3 SINE MIR -8 200 3 271 188 145 0 chr15 48988380 48988449 -52392072 - L2 LINE L2 -2 3311 3233 329 323 122 93 chr15 48988861 48989304 -52391217 - L2 LINE L2 -9 3263 2808 215 235 15 59 chr15 48989284 48989352 -52391169 + L2 LINE L2 3245 3309 -4 * 22 0 0 0 chr15 48990139 48990161 -52390360 + AT_rich Low_complexity Low_complexity 1 22 0 300 122 0 0 chr15 48990184 48990225 -52390296 + L1MC1 LINE L1 6276 6316 -17 1138 108 6 0 chr15 48992145 48992302 -52388219 - AluSx SINE Alu -13 297 140 432 21 0 0 chr15 48992307 48992355 -52388166 + AluSq/x SINE Alu 84 131 -181 1097 75 0 0 chr15 48992388 48992521 -52388000 - AluSx SINE Alu -180 133 1 207 0 0 0 chr15 48992759 48992782 -52387739 + (A)n Simple_repeat Simple_repeat 1 23 0 204 287 19 83 chr15 48993596 48993704 -52386817 - L2 LINE L2 -4 3268 3168 546 266 57 17 chr15 48993769 48993946 -52386575 - MIR SINE MIR -74 188 5 284 186 0 0 chr15 48993950 48993993 -52386528 + L2 LINE L2 3003 3045 -268 1771 162 7 13 chr15 48994634 48994937 -52385584 + AluJo SINE Alu 1 301 -11 2192 130 0 0 chr15 48994941 48995241 -52385280 + AluSx SINE Alu 1 300 -12 277 262 96 48 chr15 48996125 48996312 -52384209 + L1MC5 LINE L1 7736 7931 -30 1415 228 11 11 chr15 48996566 48996782 -52383739 + L1MB1 LINE L1 4943 5161 -985 2314 88 0 3 chr15 48996782 48997078 -52383443 + AluSc SINE Alu 1 295 -14 1415 228 11 11 chr15 48997078 48997208 -52383313 + L1MB1 LINE L1 5160 5289 -857 866 146 7 21 chr15 48997208 48997352 -52383169 + FLAM_C SINE Alu 1 142 -1 4144 173 5 84 chr15 48997352 48998213 -52382308 + L1MB1 LINE L1 5279 6060 -108 1899 141 7 11 chr15 48998213 48998519 -52382002 - AluJo SINE Alu 0 305 1 4144 173 5 84 chr15 48998519 48998610 -52381911 + L1MB1 LINE L1 6060 6157 -11 25 75 0 0 chr15 48998610 48998663 -52381858 + AT_rich Low_complexity Low_complexity 1 53 0 1685 218 63 66 chr15 48999273 48999668 -52380853 + L1MC5 LINE L1 7326 7720 -241 3165 177 47 2 chr15 48999668 49000204 -52380317 - MER68 LTR ERV1 -2 560 1 1685 218 63 66 chr15 49000204 49000410 -52380111 + L1MC5 LINE L1 7720 7925 -36 2248 110 3 0 chr15 49000880 49001180 -52379341 + AluSx SINE Alu 1 301 -11 1974 147 7 0 chr15 49001986 49002292 -52378229 - AluSx SINE Alu -4 308 1 3114 148 37 13 chr15 49002643 49003178 -52377343 + L1MA8 LINE L1 5738 6285 -6 1447 62 42 21 chr15 49003396 49003589 -52376932 + L1PA6 LINE L1 5958 6154 0 519 259 6 56 chr15 49004304 49004466 -52376055 - LTR16A LTR ERVL -162 288 135 1938 153 0 10 chr15 49004466 49004760 -52375761 - AluJb SINE Alu -21 291 1 241 269 103 0 chr15 49004815 49004893 -52375628 + L1M4 LINE L1 2744 2829 -3317 2269 108 3 3 chr15 49004973 49005279 -52375242 + AluSx SINE Alu 1 306 -6 1087 259 49 2 chr15 49005287 49005696 -52374825 + L1M4 LINE L1 2814 3241 -2905 709 300 119 18 chr15 49005697 49006150 -52374371 - L1ME LINE L1 -327 5794 5296 4849 140 33 56 chr15 49006817 49007400 -52373121 - L1MB3 LINE L1 -2 6181 5586 654 268 0 30 chr15 49007400 49007568 -52372953 + FRAM SINE Alu 1 163 -3 4849 140 33 56 chr15 49007568 49007842 -52372679 - L1MB3 LINE L1 -597 5586 5345 2384 90 0 3 chr15 49007842 49008142 -52372379 - AluSq SINE Alu -14 299 1 4849 140 33 56 chr15 49008142 49008224 -52372297 - L1MB3 LINE L1 -838 5345 5263 32 0 0 0 chr15 49008406 49008438 -52372083 + AT_rich Low_complexity Low_complexity 1 32 0 2389 54 0 10 chr15 49008472 49008767 -52371754 - AluY SINE Alu -19 292 1 1866 171 7 3 chr15 49008814 49009124 -52371397 + AluJo SINE Alu 1 311 -1 303 200 35 43 chr15 49009174 49009289 -52371232 - L1ME4a LINE L1 -1 6120 6007 392 81 0 16 chr15 49009339 49009401 -52371120 + (CA)n Simple_repeat Simple_repeat 1 61 0 25 31 0 0 chr15 49009500 49009532 -52370989 + AT_rich Low_complexity Low_complexity 1 32 0 1768 116 21 0 chr15 49009533 49009774 -52370747 + AluSx SINE Alu 38 283 -29 294 29 0 0 chr15 49009774 49009809 -52370712 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2730 148 8 17 chr15 49010349 49010830 -52369691 + L1MA4 LINE L1 5823 6299 -1 1613 165 10 37 chr15 49010834 49011131 -52369390 + AluJo SINE Alu 1 289 -23 22 35 0 0 chr15 49011131 49011160 -52369361 + AT_rich Low_complexity Low_complexity 1 29 0 212 189 0 0 chr15 49011538 49011575 -52368946 + T-rich Low_complexity Low_complexity 1 37 0 349 228 82 82 chr15 49012069 49012114 -52368407 - MLT1L LTR MaLR -8 607 563 2132 103 34 0 chr15 49012114 49012406 -52368115 + AluSg1 SINE Alu 2 303 -6 349 228 82 82 chr15 49012406 49012518 -52368003 - MLT1L LTR MaLR -51 564 450 2069 131 0 20 chr15 49013425 49013563 -52366958 + AluSx SINE Alu 1 140 -172 2410 91 0 0 chr15 49013563 49013871 -52366650 + AluY SINE Alu 1 308 -3 2069 131 0 20 chr15 49013871 49014038 -52366483 + AluSx SINE Alu 140 300 -12 1853 146 10 0 chr15 49014049 49014344 -52366177 + AluSx SINE Alu 1 298 -14 483 253 61 72 chr15 49014350 49014628 -52365893 - MLT1L LTR MaLR -167 448 110 1816 143 51 3 chr15 49015029 49015322 -52365199 + AluJb SINE Alu 1 307 -5 30 45 0 0 chr15 49015357 49015401 -52365120 + AT_rich Low_complexity Low_complexity 1 44 0 216 224 105 26 chr15 49015446 49015522 -52364999 - MIR SINE MIR -26 236 155 1944 163 0 7 chr15 49016467 49016773 -52363748 - AluJb SINE Alu -8 304 1 22 35 0 0 chr15 49017787 49017816 -52362705 + AT_rich Low_complexity Low_complexity 1 29 0 2303 128 0 59 chr15 49017955 49018313 -52362208 + MER1B DNA MER1_type 1 337 0 2497 57 7 0 chr15 49019383 49019680 -52360841 + AluY SINE Alu 1 299 -12 21 0 0 0 chr15 49020015 49020036 -52360485 + AT_rich Low_complexity Low_complexity 1 21 0 833 174 15 92 chr15 49020331 49020527 -52359994 + AluSg/x SINE Alu 120 300 -12 2287 98 0 0 chr15 49020650 49020945 -52359576 + AluSq SINE Alu 1 295 -18 2109 96 0 21 chr15 49020950 49021232 -52359289 - AluSq SINE Alu -37 276 1 212 320 27 95 chr15 49021662 49021741 -52358780 - L2 LINE L2 0 3272 3206 372 171 14 0 chr15 49021741 49021811 -52358710 + L1MB8 LINE L1 6104 6174 -4 212 320 27 95 chr15 49021811 49021878 -52358643 - L2 LINE L2 -66 3206 3136 522 227 200 0 chr15 49022154 49022304 -52358217 + MER5A DNA MER1_type 9 188 -1 183 365 77 13 chr15 49022337 49022493 -52358028 - L2 LINE L2 -556 2758 2593 1926 151 13 10 chr15 49022497 49022808 -52357713 + AluJo SINE Alu 1 312 0 225 312 46 18 chr15 49022857 49022966 -52357555 - L2 LINE L2 -808 2506 2395 715 199 96 0 chr15 49022984 49023130 -52357391 - MIR SINE MIR -1 261 102 423 299 173 13 chr15 49023123 49023441 -52357080 - L2 LINE L2 -900 2414 2046 * 841 255 27 27 chr15 49023465 49023724 -52356797 - MIR SINE MIR -2 260 2 251 288 0 0 chr15 49023779 49023838 -52356683 + MIR SINE MIR 204 262 0 399 223 228 80 chr15 49024778 49024904 -52355617 + L1ME4a LINE L1 5679 5785 -336 1986 105 0 82 chr15 49024904 49025219 -52355302 + AluSq SINE Alu 1 289 -24 399 223 228 80 chr15 49025219 49025478 -52355043 + L1ME4a LINE L1 5785 6121 0 817 189 15 102 chr15 49025628 49025834 -52354687 + MER20 DNA MER1_type 32 219 0 1655 189 7 3 chr15 49026832 49027146 -52353375 + AluJo SINE Alu 1 315 0 2309 89 0 3 chr15 49027240 49027531 -52352990 - AluSg SINE Alu -20 290 1 491 274 162 25 chr15 49027931 49028172 -52352349 + MLT1K LTR MaLR 313 586 -2 2242 107 0 0 chr15 49028449 49028747 -52351774 + AluSg SINE Alu 1 298 -12 815 152 62 0 chr15 49029693 49029854 -52350667 + L1ME1 LINE L1 6000 6161 -5 24 0 0 0 chr15 49030336 49030360 -52350161 + AT_rich Low_complexity Low_complexity 1 24 0 364 211 172 8 chr15 49030937 49031065 -52349456 - L2 LINE L2 -4 3309 3161 26 30 0 0 chr15 49031740 49031773 -52348748 + AT_rich Low_complexity Low_complexity 1 33 0 1576 216 0 0 chr15 49031773 49032051 -52348470 + AluJb SINE Alu 1 278 -34 360 0 0 0 chr15 49032055 49032095 -52348426 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1787 156 36 7 chr15 49032098 49032399 -52348122 + AluJo SINE Alu 1 310 -2 567 130 10 0 chr15 49032721 49032821 -52347700 + L1MB7 LINE L1 6084 6184 0 327 317 59 20 chr15 49033416 49033517 -52347004 + L2 LINE L2 3153 3257 -15 1031 148 4 109 chr15 49033690 49033866 -52346655 - AluJb SINE Alu -21 291 98 207 0 0 0 chr15 49033866 49033889 -52346632 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1981 93 67 0 chr15 49033889 49034157 -52346364 - AluSp SINE Alu -27 286 1 1031 148 4 109 chr15 49034157 49034209 -52346312 - AluJb SINE Alu -212 100 86 1486 83 69 28 chr15 49034427 49034645 -52345876 + MER30 DNA MER1_type 4 230 0 448 231 21 49 chr15 49034705 49034848 -52345673 + MIR SINE MIR 124 262 0 426 205 114 27 chr15 49035073 49035256 -52345265 - MIR3 SINE MIR -64 198 4 363 282 144 81 chr15 49036064 49036660 -52343861 - L1M2 LINE L1 -5562 1287 654 336 305 79 94 chr15 49036274 49036883 -52343638 + L1M2 LINE L1 760 1359 -5490 * 219 114 0 0 chr15 49037580 49037615 -52342906 + (TTG)n Simple_repeat Simple_repeat 2 36 0 193 229 0 21 chr15 49038008 49038056 -52342465 + MIR3 SINE MIR 12 58 -150 2041 130 0 0 chr15 49038388 49038672 -52341849 - AluSx SINE Alu -28 284 1 505 270 104 4 chr15 49039006 49039164 -52341357 - L2 LINE L2 -9 3304 3114 2255 167 45 55 chr15 49039164 49039636 -52340885 - MLT1C LTR MaLR 0 467 1 505 270 104 4 chr15 49039636 49039707 -52340814 - L2 LINE L2 -198 3115 3052 211 341 91 0 chr15 49039729 49039817 -52340704 - L2 LINE L2 -20 3252 3157 2035 144 0 16 chr15 49040414 49040719 -52339802 - AluSx SINE Alu -12 300 1 188 327 58 0 chr15 49041082 49041134 -52339387 + MIR3 SINE MIR 14 68 -140 288 0 0 0 chr15 49041165 49041197 -52339324 + (TAA)n Simple_repeat Simple_repeat 2 33 0 5022 130 115 127 chr15 49041197 49041649 -52338872 - L1MC3 LINE L1 -13 7772 7316 1712 196 0 3 chr15 49041649 49041950 -52338571 - AluJb SINE Alu -1 311 12 5022 130 115 127 chr15 49041950 49042094 -52338427 - L1MC3 LINE L1 -469 7316 7172 2275 128 98 14 chr15 49042094 49042453 -52338068 + MLT1B LTR MaLR 1 389 -1 5022 130 115 127 chr15 49042453 49042482 -52338039 - L1MC3 LINE L1 -613 7172 7144 236 277 12 12 chr15 49042482 49042565 -52337956 - MLT1F1 LTR MaLR -459 108 26 5022 130 115 127 chr15 49042565 49043189 -52337332 - L1MC3 LINE L1 -641 7144 6455 2324 98 0 25 chr15 49043221 49043539 -52336982 + AluSg SINE Alu 1 310 0 2151 110 0 26 chr15 49043670 49043980 -52336541 - AluSg SINE Alu -8 302 1 2628 33 3 3 chr15 49044277 49044577 -52335944 - AluY SINE Alu -11 300 1 315 336 102 72 chr15 49044707 49045139 -52335382 + LTR67 LTR ERVL 42 486 -71 1791 135 4 8 chr15 49045193 49045459 -52335062 - AluJb SINE Alu -38 274 10 226 306 82 0 chr15 49045873 49045958 -52334563 + L1M4 LINE L1 5199 5290 -856 2232 127 37 45 chr15 49045971 49046349 -52334172 + THE1C LTR MaLR 1 375 0 2377 99 7 0 chr15 49046510 49046813 -52333708 + AluSp SINE Alu 1 305 -8 2133 135 58 25 chr15 49046870 49047233 -52333288 - THE1C LTR MaLR 0 375 1 10804 102 46 44 chr15 49047233 49048760 -52331761 - THE1C-int LTR MaLR 0 1580 48 2325 60 10 23 chr15 49048760 49049060 -52331461 - AluY SINE Alu -15 296 1 10804 102 46 44 chr15 49049060 49049109 -52331412 - THE1C-int LTR MaLR -1532 48 1 913 141 109 16 chr15 49049109 49049293 -52331228 - THE1C LTR MaLR 0 375 175 337 289 64 45 chr15 49049350 49049506 -52331015 + HAL1b LINE L1 746 904 -444 29 0 0 0 chr15 49049668 49049697 -52330824 + AT_rich Low_complexity Low_complexity 1 29 0 1445 177 10 47 chr15 49049703 49050003 -52330518 - AluJo SINE Alu -23 289 1 247 234 26 0 chr15 49050026 49050103 -52330418 + HAL1 LINE L1 2293 2371 -136 1730 158 0 103 chr15 49050819 49050981 -52329540 - AluJb SINE Alu -7 295 183 2188 108 0 3 chr15 49050981 49051276 -52329245 - AluSx SINE Alu -3 309 16 1730 158 0 103 chr15 49051276 49051442 -52329079 - AluJb SINE Alu -119 183 1 3327 193 50 88 chr15 49051442 49051677 -52328844 - L1 LINE L1 -3026 4539 4296 2210 90 7 35 chr15 49051677 49051987 -52328534 - AluSq SINE Alu -1 312 12 1738 166 0 14 chr15 49051988 49052284 -52328237 - AluJb SINE Alu -20 292 1 3327 193 50 88 chr15 49052284 49052625 -52327896 - L1 LINE L1 -3269 4296 3943 2016 138 7 0 chr15 49052625 49052921 -52327600 - AluSx SINE Alu -4 308 11 3327 193 50 88 chr15 49052921 49053418 -52327103 - L1 LINE L1 -3622 3943 3501 5288 205 45 11 chr15 49053424 49054514 -52326007 - L1 LINE L1 -5722 1844 718 239 29 57 0 chr15 49054845 49054880 -52325641 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1375 155 49 38 chr15 49055586 49055706 -52324815 + Tigger7 DNA MER2_type 1 118 -615 2421 87 10 0 chr15 49055706 49056015 -52324506 + AluSq SINE Alu 1 312 -1 1375 155 49 38 chr15 49056015 49056158 -52324363 + Tigger7 DNA MER2_type 118 267 -466 688 141 0 0 chr15 49056156 49056255 -52324266 + Tigger7 DNA MER2_type 2489 2587 0 * 577 208 20 0 chr15 49058036 49058137 -52322384 + FRAM SINE Alu 63 165 -11 1775 149 19 56 chr15 49059789 49060112 -52320409 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr15 49060255 49060277 -52320244 + AT_rich Low_complexity Low_complexity 1 22 0 2058 119 0 26 chr15 49060287 49060590 -52319931 + AluSx SINE Alu 1 295 -17 262 194 15 75 chr15 49060990 49061057 -52319464 - L2 LINE L2 -20 3252 3190 22 0 0 0 chr15 49062036 49062058 -52318463 + AT_rich Low_complexity Low_complexity 1 22 0 194 299 139 73 chr15 49062411 49062548 -52317973 - MIR3 SINE MIR -30 178 33 23 0 0 0 chr15 49065219 49065242 -52315279 + AT_rich Low_complexity Low_complexity 1 23 0 853 142 22 30 chr15 49065242 49065376 -52315145 - AluJo SINE Alu -178 134 2 1597 191 12 35 chr15 49065670 49065989 -52314532 + AluJb SINE Alu 1 312 0 21 57 0 0 chr15 49066266 49066301 -52314220 + AT_rich Low_complexity Low_complexity 1 35 0 635 191 0 9 chr15 49066354 49066464 -52314057 - FLAM_C SINE Alu -34 109 1 771 95 9 0 chr15 49067690 49067795 -52312726 - AluSq/x SINE Alu -206 107 2 23 0 0 0 chr15 49069150 49069173 -52311348 + AT_rich Low_complexity Low_complexity 1 23 0 954 117 0 0 chr15 49069435 49069572 -52310949 - FLAM_C SINE Alu -1 142 6 492 255 244 11 chr15 49069573 49069954 -52310567 + L1M4 LINE L1 2459 2928 -3218 230 189 0 74 chr15 49069954 49070151 -52310370 + AluJo SINE Alu 73 300 -2 2193 90 0 27 chr15 49070365 49070666 -52309855 - AluSg SINE Alu -10 300 8 822 179 13 0 chr15 49071774 49071925 -52308596 + FRAM SINE Alu 8 160 -16 1341 134 94 43 chr15 49072538 49072814 -52307707 - AluJo SINE Alu -12 300 11 2271 94 0 3 chr15 49073355 49073653 -52306868 - AluSg SINE Alu -13 297 1 1974 159 0 0 chr15 49073656 49073952 -52306569 - AluSx SINE Alu -10 302 7 28 0 0 0 chr15 49073957 49073985 -52306536 + AT_rich Low_complexity Low_complexity 1 28 0 1380 137 53 26 chr15 49073986 49074092 -52306429 - AluJo SINE Alu -80 232 130 216 0 0 0 chr15 49074092 49074116 -52306405 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1380 137 53 26 chr15 49074116 49074235 -52306286 - AluJo SINE Alu -182 130 1 235 314 33 25 chr15 49077188 49077309 -52303212 + L2 LINE L2 1839 1960 -1354 871 153 15 0 chr15 49077956 49078087 -52302434 + AluJo/FLAM SINE Alu 1 133 -169 2147 122 0 7 chr15 49078088 49078392 -52302129 - AluSx SINE Alu -10 302 1 309 252 213 26 chr15 49078623 49078778 -52301743 + L2 LINE L2 1987 2170 -1144 1863 125 6 87 chr15 49078809 49078994 -52301527 - AluSx SINE Alu -15 297 147 2179 103 14 0 chr15 49078994 49079276 -52301245 + AluSq SINE Alu 1 286 -27 1863 125 6 87 chr15 49079276 49079411 -52301110 - AluSx SINE Alu -165 147 3 3034 133 29 6 chr15 49079439 49079919 -52300602 + Tigger1 DNA MER2_type 2 492 -1926 978 136 7 0 chr15 49079919 49080059 -52300462 + AluJb SINE Alu 1 141 -171 9487 123 34 3 chr15 49080063 49081062 -52299459 + Tigger1 DNA MER2_type 414 1473 -945 1801 132 0 8 chr15 49081062 49081327 -52299194 - AluSx SINE Alu -17 295 33 9487 123 34 3 chr15 49081327 49081762 -52298759 + Tigger1 DNA MER2_type 1473 1893 -525 2445 111 19 3 chr15 49081769 49082139 -52298382 - L1MA4 LINE L1 -260 6040 5665 1757 127 88 14 chr15 49082139 49082422 -52298099 - AluSx SINE Alu -8 304 1 1797 152 23 23 chr15 49082433 49082743 -52297778 - AluSx SINE Alu -2 310 1 2651 167 60 30 chr15 49082744 49082979 -52297542 - L1MA4 LINE L1 -782 5364 5138 2354 108 0 0 chr15 49082979 49083285 -52297236 - AluSx SINE Alu -6 306 1 2651 167 60 30 chr15 49083285 49083876 -52296645 - L1MA4 LINE L1 -1008 5138 4345 2360 116 6 14 chr15 49083876 49084222 -52296299 + Tigger1 DNA MER2_type 1886 2228 -190 919 196 196 87 chr15 49084224 49084489 -52296032 - AluJo SINE Alu -17 295 2 585 158 93 163 chr15 49084492 49084594 -52295927 + Tigger1 DNA MER2_type 2219 2300 -118 1844 112 27 4 chr15 49084594 49084854 -52295667 - AluSq SINE Alu -26 287 22 585 158 93 163 chr15 49084854 49084966 -52295555 + Tigger1 DNA MER2_type 2300 2418 0 777 164 30 8 chr15 49084977 49085111 -52295410 + MER3 DNA MER1_type 2 138 -71 259 187 80 40 chr15 49085157 49085232 -52295289 - MER5A DNA MER1_type -77 112 35 2118 108 29 10 chr15 49085704 49086010 -52294511 + AluSx SINE Alu 1 312 0 294 309 166 40 chr15 49086329 49086504 -52294017 + MIR SINE MIR 47 243 -19 2096 58 0 15 chr15 49087113 49087374 -52293147 - AluY SINE Alu -16 295 39 184 348 97 7 chr15 49088058 49088213 -52292308 - MIR3 SINE MIR -10 198 30 293 130 19 19 chr15 49090544 49090598 -52289923 + AluSc SINE Alu 246 299 0 2163 106 24 3 chr15 49090639 49090932 -52289589 - AluSq SINE Alu -14 299 1 21 0 0 0 chr15 49091601 49091622 -52288899 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 49091948 49091969 -52288552 + AT_rich Low_complexity Low_complexity 1 21 0 227 261 29 0 chr15 49092724 49092793 -52287728 + L1MC4 LINE L1 6648 6718 -1324 443 281 150 12 chr15 49094584 49094744 -52285777 + MER5A DNA MER1_type 4 185 -4 1808 119 14 58 chr15 49094928 49095244 -52285277 - AluSx SINE Alu 0 305 3 2246 109 0 0 chr15 49096288 49096582 -52283939 - AluSx SINE Alu -18 294 1 2020 110 3 60 chr15 49097724 49098043 -52282478 - AluSq SINE Alu -12 301 1 1471 92 64 9 chr15 49099056 49099274 -52281247 + MER30 DNA MER1_type 1 230 0 1642 184 17 3 chr15 49099360 49099653 -52280868 + AluJo SINE Alu 1 297 -15 438 297 150 65 chr15 49101100 49101853 -52278668 + L2 LINE L2 2440 3236 -36 1440 222 71 40 chr15 49102022 49102322 -52278199 + L1ME2 LINE L1 4137 4426 -1720 1403 214 0 23 chr15 49102322 49102625 -52277896 + AluJo SINE Alu 1 296 -6 1440 222 71 40 chr15 49102625 49103069 -52277452 + L1ME2 LINE L1 4426 5082 -1064 881 221 39 0 chr15 49103081 49103262 -52277259 + MER20 DNA MER1_type 32 219 0 502 236 70 0 chr15 49103262 49103419 -52277102 + L1ME2 LINE L1 5075 5242 -904 1847 205 147 15 chr15 49103426 49103632 -52276889 + L1ME2 LINE L1 5369 5547 -617 1040 37 22 0 chr15 49103632 49103767 -52276754 + (CTATT)n Simple_repeat Simple_repeat 1 138 0 1847 205 147 15 chr15 49103767 49104092 -52276429 + L1ME2 LINE L1 5547 5970 -194 940 54 93 266 chr15 49104227 49104337 -52276184 + MER30 DNA MER1_type 1 37 -193 2085 121 3 0 chr15 49104337 49104646 -52275875 + AluSx SINE Alu 1 310 0 940 54 93 266 chr15 49104646 49104812 -52275709 + MER30 DNA MER1_type 37 230 0 2287 170 62 0 chr15 49105232 49105633 -52274888 + MSTB LTR MaLR 1 426 0 28 29 0 0 chr15 49105966 49106001 -52274520 + AT_rich Low_complexity Low_complexity 1 35 0 313 197 0 0 chr15 49106164 49106235 -52274286 - L1MC3 LINE L1 0 7785 7715 906 140 13 19 chr15 49106775 49106932 -52273589 - FRAM SINE Alu -16 160 5 26 50 0 0 chr15 49106994 49107034 -52273487 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr15 49107064 49107086 -52273435 + AT_rich Low_complexity Low_complexity 1 22 0 189 107 0 0 chr15 49108017 49108045 -52272476 + (A)n Simple_repeat Simple_repeat 1 28 0 422 297 65 44 chr15 49108432 49108772 -52271749 - L1MEd LINE L1 -4873 1246 900 314 329 134 49 chr15 49108827 49109192 -52271329 - L1MEd LINE L1 -5279 840 445 5614 143 20 14 chr15 49109649 49110630 -52269891 + L1MA3 LINE L1 5319 6305 0 1121 38 0 0 chr15 49110634 49110766 -52269755 + AluY SINE Alu 1 132 -179 352 176 351 0 chr15 49111071 49111202 -52269319 - MIR SINE MIR -78 184 8 24 53 0 0 chr15 49111518 49111556 -52268965 + AT_rich Low_complexity Low_complexity 1 38 0 1087 178 0 36 chr15 49111868 49112087 -52268434 - MER46A DNA MER2_type 0 236 26 1886 119 66 6 chr15 49112301 49112619 -52267902 - MER44D DNA MER2_type -2 607 1 22 0 0 0 chr15 49112734 49112756 -52267765 + AT_rich Low_complexity Low_complexity 1 22 0 566 251 98 27 chr15 49112874 49113057 -52267464 + MIR SINE MIR 41 236 -26 247 360 56 32 chr15 49113615 49113740 -52266781 - MIR3 SINE MIR -76 132 5 290 303 49 49 chr15 49113985 49114107 -52266414 + MIR SINE MIR 16 137 -71 518 90 26 0 chr15 49114154 49114232 -52266289 + MADE1 DNA Mariner 1 80 0 1847 168 0 32 chr15 49114370 49114685 -52265836 - AluJo SINE Alu -7 305 1 2124 122 0 0 chr15 49118274 49118569 -52261952 - AluSx SINE Alu -13 299 5 2214 110 0 3 chr15 49118792 49119091 -52261430 - AluSg SINE Alu -12 298 1 2187 100 0 0 chr15 49119378 49119657 -52260864 + AluSg SINE Alu 5 283 -27 34 24 0 0 chr15 49120359 49120400 -52260121 + AT_rich Low_complexity Low_complexity 1 41 0 2243 97 0 0 chr15 49120406 49120694 -52259827 - AluSp SINE Alu -25 288 1 2301 102 0 0 chr15 49120854 49121148 -52259373 + AluSx SINE Alu 1 294 -18 870 284 82 3 chr15 49122069 49122320 -52258201 - MIR SINE MIR 0 262 1 771 169 0 0 chr15 49122740 49122858 -52257663 + FLAM_C SINE Alu 1 118 -15 1066 165 91 135 chr15 49123363 49123770 -52256751 + MLT1B LTR MaLR 2 390 0 81 21 0 0 chr15 49124024 49124119 -52256402 + AT_rich Low_complexity Low_complexity 1 95 0 2284 94 0 3 chr15 49124329 49124627 -52255894 - AluY SINE Alu -14 297 1 186 43 0 0 chr15 49124966 49124989 -52255532 + (TTC)n Simple_repeat Simple_repeat 2 24 0 877 162 7 7 chr15 49124991 49125133 -52255388 - FRAM SINE Alu -30 146 5 1578 144 76 4 chr15 49125852 49126150 -52254371 + AluSx SINE Alu 1 317 0 477 355 77 0 chr15 49126436 49126619 -52253902 + L3 LINE CR1 1372 1568 -9 1728 167 41 0 chr15 49126955 49127249 -52253272 + AluJb SINE Alu 1 306 -6 429 285 19 19 chr15 49127294 49127452 -52253069 + L1ME LINE L1 5628 5785 -336 2221 108 47 36 chr15 49127772 49128132 -52252389 + THE1B LTR MaLR 1 364 0 2040 138 14 0 chr15 49128137 49128434 -52252087 - AluSx SINE Alu -11 301 1 816 268 175 39 chr15 49128730 49129129 -52251392 - L2 LINE L2 -1 3312 2968 1621 181 58 0 chr15 49129129 49129249 -52251272 + AluJo SINE Alu 1 113 -199 477 0 0 0 chr15 49129249 49129302 -52251219 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 1621 181 58 0 chr15 49129302 49129457 -52251064 + AluJo SINE Alu 113 292 -20 816 268 175 39 chr15 49129457 49129692 -52250829 - L2 LINE L2 -345 2968 2606 711 279 185 9 chr15 49129692 49130032 -52250489 - L2 LINE L2 -1062 2252 1853 216 0 0 0 chr15 49130515 49130539 -52249982 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 2235 114 0 3 chr15 49131069 49131367 -52249154 - AluSx SINE Alu -15 297 1 351 333 32 26 chr15 49131384 49131540 -52248981 - MIR3 SINE MIR -20 188 32 615 266 109 13 chr15 49132135 49132364 -52248157 + MIR SINE MIR 2 252 -10 181 163 0 93 chr15 49132442 49132485 -52248036 - MIR SINE MIR -154 108 70 448 272 1 1 chr15 49132880 49132992 -52247529 - MIR SINE MIR -68 140 41 437 319 8 17 chr15 49133642 49133761 -52246760 + L2 LINE L2 3138 3255 -17 1355 156 5 18 chr15 49135711 49135929 -52244592 - AluJo SINE Alu -83 229 15 759 263 95 0 chr15 49137185 49137417 -52243104 + L1MEc LINE L1 41 294 -6102 2150 223 72 57 chr15 49137544 49138053 -52242468 + L1MEc LINE L1 1623 2123 -4092 1618 111 123 4 chr15 49138053 49138296 -52242225 + AluSx SINE Alu 1 272 -40 2150 223 72 57 chr15 49138296 49138496 -52242025 + L1MEc LINE L1 2123 2318 -3897 2353 104 0 0 chr15 49138496 49138803 -52241718 - AluSx SINE Alu -5 307 1 2150 223 72 57 chr15 49138803 49139307 -52241214 + L1MEc LINE L1 2318 2836 -3379 1716 175 0 10 chr15 49139317 49139609 -52240912 + AluJo SINE Alu 6 294 -18 2066 113 0 11 chr15 49139617 49139901 -52240620 + AluSg SINE Alu 1 281 -29 209 85 43 21 chr15 49139908 49139955 -52240566 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 243 81 103 11 chr15 49139957 49140044 -52240477 + (TTAAA)n Simple_repeat Simple_repeat 5 99 0 214 83 0 28 chr15 49140044 49140080 -52240441 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 420 178 63 1 chr15 49140080 49140192 -52240329 + L1MEc LINE L1 2821 2940 -3275 1144 214 96 33 chr15 49140246 49140611 -52239910 + MLT1B LTR MaLR 1 388 -2 480 263 136 10 chr15 49141829 49142027 -52238494 - L1M4 LINE L1 -1942 4204 3982 573 246 121 3 chr15 49142258 49142326 -52238195 + L1MC1 LINE L1 6112 6171 -173 1983 92 51 24 chr15 49142326 49142619 -52237902 + AluSx SINE Alu 1 301 -11 573 246 121 3 chr15 49142619 49142758 -52237763 + L1MC1 LINE L1 6171 6344 0 225 316 31 20 chr15 49143602 49143657 -52236864 - MIR SINE MIR 0 262 204 2092 110 7 30 chr15 49143657 49143958 -52236563 - AluSq SINE Alu -19 294 1 225 316 31 20 chr15 49143958 49144000 -52236521 - MIR SINE MIR -58 204 164 1903 111 61 20 chr15 49144202 49144499 -52236022 + AluSx SINE Alu 1 309 -3 455 115 58 11 chr15 49144673 49144760 -52235761 - L1MA6 LINE L1 0 6300 6210 1050 108 6 0 chr15 49144760 49144911 -52235610 + L1M2 LINE L1 5556 5707 -593 501 269 88 19 chr15 49146198 49146358 -52234163 + MIR3 SINE MIR 32 202 -6 704 247 19 0 chr15 49146714 49146868 -52233653 - FRAM SINE Alu -19 157 1 1682 152 34 0 chr15 49147215 49147484 -52233037 - AluJo SINE Alu -34 278 1 2363 91 3 0 chr15 49147535 49147844 -52232677 + AluSg SINE Alu 1 310 0 774 148 7 15 chr15 49147989 49148124 -52232397 - FLAM_C SINE Alu -9 134 1 189 241 52 52 chr15 49148411 49148469 -52232052 + L2 LINE L2 3208 3265 -7 1956 129 0 17 chr15 49149058 49149367 -52231154 + AluSx SINE Alu 1 304 0 269 229 117 12 chr15 49152072 49152194 -52228327 - MIR SINE MIR -47 215 73 1395 150 38 4 chr15 49152230 49152497 -52228024 - L1MA4 LINE L1 -2 6298 6023 387 316 7 14 chr15 49157440 49157579 -52222942 + MIR SINE MIR 3 140 -122 25 65 0 0 chr15 49157906 49157952 -52222569 + AT_rich Low_complexity Low_complexity 1 46 0 239 261 65 65 chr15 49159560 49159652 -52220869 - MIR SINE MIR -159 103 12 202 354 115 35 chr15 49159984 49160097 -52220424 + MIR SINE MIR 18 139 -69 303 261 87 11 chr15 49160306 49160398 -52220123 + MIR SINE MIR 55 153 -109 23 33 0 0 chr15 49161471 49161501 -52219020 + AT_rich Low_complexity Low_complexity 1 30 0 221 261 216 27 chr15 49161966 49162077 -52218444 + L2 LINE L2 2326 2457 -857 271 297 132 39 chr15 49162087 49162269 -52218252 - MIR SINE MIR -12 250 52 1533 171 6 89 chr15 49163179 49163506 -52217015 + AluJo SINE Alu 1 300 -12 310 308 77 8 chr15 49163664 49163794 -52216727 + L2 LINE L2 3163 3301 -12 520 115 10 77 chr15 49164274 49164378 -52216143 + FLAM_A SINE Alu 46 142 0 279 154 48 115 chr15 49164383 49164487 -52216034 + MER94 DNA DNA 15 111 -23 284 403 16 0 chr15 49164679 49164803 -52215718 - L2 LINE L2 -9 3263 3138 341 315 74 31 chr15 49164847 49165009 -52215512 + L2 LINE L2 2882 3050 -222 374 234 25 108 chr15 49165108 49165156 -52215365 - MIR SINE MIR 0 262 212 2146 120 0 7 chr15 49165156 49165457 -52215064 - AluSp SINE Alu -14 299 1 374 234 25 108 chr15 49165457 49165566 -52214955 - MIR SINE MIR -50 212 118 262 260 104 31 chr15 49165951 49166047 -52214474 + MIR3 SINE MIR 92 194 -14 219 88 0 0 chr15 49166435 49166469 -52214052 + (A)n Simple_repeat Simple_repeat 1 34 0 361 254 216 16 chr15 49166477 49166645 -52213876 - MIR3 SINE MIR -8 200 2 2546 47 0 0 chr15 49166993 49167292 -52213229 + AluY SINE Alu 1 299 -12 1408 161 12 28 chr15 49168136 49168384 -52212137 - AluJo SINE Alu -22 290 47 478 304 71 27 chr15 49168893 49169117 -52211404 - MIR SINE MIR -22 240 7 1555 185 22 0 chr15 49169171 49169441 -52211080 + AluJo SINE Alu 7 282 -30 1548 146 19 4 chr15 49169515 49169776 -52210745 + L1PA16 LINE L1 5893 6157 -9 474 267 108 59 chr15 49170099 49170255 -52210266 + L1ME4a LINE L1 5601 5748 -373 345 156 0 0 chr15 49170255 49170319 -52210202 + L1MB3 LINE L1 6118 6181 -2 474 267 108 59 chr15 49170319 49170533 -52209988 + L1ME4a LINE L1 5748 5989 -132 224 320 107 0 chr15 49170857 49170932 -52209589 + L2 LINE L2 3185 3267 -5 231 309 111 24 chr15 49170978 49171104 -52209417 - MIR SINE MIR -60 202 66 707 313 129 30 chr15 49171178 49171612 -52208909 - L2 LINE L2 -5 3308 2832 387 321 16 32 chr15 49171903 49172041 -52208480 + L1MC4 LINE L1 7695 7831 -211 859 226 77 0 chr15 49172041 49172236 -52208285 + MER63A DNA MER1_type 1 210 0 387 321 16 32 chr15 49172236 49172284 -52208237 + L1MC4 LINE L1 7831 7878 -164 * 5121 140 32 24 chr15 49172282 49173208 -52207313 + L1MA6 LINE L1 5362 6295 -5 233 247 86 0 chr15 49173319 49173412 -52207109 + L1MC4 LINE L1 7925 8025 -17 2252 61 0 51 chr15 49173412 49173725 -52206796 - AluY SINE Alu -14 297 1 21 0 0 0 chr15 49173727 49173748 -52206773 + AT_rich Low_complexity Low_complexity 1 21 0 287 369 92 14 chr15 49174793 49175010 -52205511 - MIR SINE MIR -12 250 17 663 292 79 86 chr15 49175937 49176403 -52204118 - L2 LINE L2 0 3313 2851 1629 178 0 59 chr15 49176559 49176880 -52203641 + AluJo SINE Alu 1 302 -10 675 186 55 7 chr15 49177636 49177781 -52202740 - MIR SINE MIR -27 235 84 908 253 30 5 chr15 49177912 49178114 -52202407 + MIR SINE MIR 53 259 -3 765 147 0 29 chr15 49178726 49178862 -52201659 - FLAM_C SINE Alu -11 132 1 22 0 0 0 chr15 49179160 49179182 -52201339 + AT_rich Low_complexity Low_complexity 1 22 0 352 270 225 17 chr15 49179416 49179594 -52200927 - MIR SINE MIR -1 261 47 2527 46 7 0 chr15 49180138 49180445 -52200076 + AluY SINE Alu 1 309 -2 493 230 128 22 chr15 49180816 49181042 -52199479 - MER112 DNA MER1_type -3 253 4 26 0 0 0 chr15 49181636 49181662 -52198859 + AT_rich Low_complexity Low_complexity 1 26 0 242 310 46 23 chr15 49181694 49181781 -52198740 - L3 LINE CR1 -5 1572 1484 431 278 166 71 chr15 49183585 49184038 -52196483 + L1M2 LINE L1 658 1153 -5696 620 58 0 12 chr15 49184267 49184353 -52196168 + (TCC)n Simple_repeat Simple_repeat 1 85 0 313 301 44 35 chr15 49185787 49185900 -52194621 - L2 LINE L2 -5 3267 3154 385 276 48 0 chr15 49186456 49186561 -52193960 + L2 LINE L2 3188 3297 -16 477 169 89 103 chr15 49186765 49186978 -52193543 + MLT1B LTR MaLR 3 212 -178 352 252 230 14 chr15 49187694 49187833 -52192688 - MIR SINE MIR -32 230 62 270 301 39 0 chr15 49187831 49187934 -52192587 - MIR SINE MIR -53 209 103 * 703 284 105 13 chr15 49188070 49188309 -52192212 - MIR SINE MIR 0 262 2 596 161 93 0 chr15 49188642 49188760 -52191761 + MER3 DNA MER1_type 41 122 -87 1646 181 4 11 chr15 49188764 49189045 -52191476 + AluJo SINE Alu 1 279 -33 270 143 91 13 chr15 49189059 49189136 -52191385 + MER3 DNA MER1_type 2223 2305 0 282 59 0 0 chr15 49189138 49189172 -52191349 - U2 snRNA snRNA -153 35 2 * 325 132 0 0 chr15 49189168 49189221 -52191300 + MER3 DNA MER1_type 2291 2343 0 195 42 0 0 chr15 49189221 49189245 -52191276 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 575 218 7 56 chr15 49189246 49189388 -52191133 - AluJo SINE Alu -177 135 1 801 160 194 13 chr15 49189389 49189626 -52190895 + MER3 DNA MER1_type 2334 2613 0 228 35 0 0 chr15 49189931 49189960 -52190561 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1696 169 0 4 chr15 49189962 49190228 -52190293 - AluJb SINE Alu -29 283 19 1330 160 20 75 chr15 49190228 49190533 -52189988 - AluJo SINE Alu -19 293 5 591 207 0 17 chr15 49191236 49191352 -52189169 - FLAM_A SINE Alu -19 114 1 311 320 88 16 chr15 49191507 49191632 -52188889 - L2 LINE L2 -18 3254 3121 2173 78 0 0 chr15 49191635 49191939 -52188582 + AluY SINE Alu 1 304 0 704 270 67 41 chr15 49192271 49192541 -52187980 + MLT1H LTR MaLR 23 299 -250 305 219 96 0 chr15 49192596 49192669 -52187852 + MLT1H LTR MaLR 454 533 -16 388 315 116 68 chr15 49192801 49193268 -52187253 - L2 LINE L2 -638 2676 2188 298 312 0 11 chr15 49193289 49193382 -52187139 - L2 LINE L2 -1315 1999 1908 398 273 30 0 chr15 49194713 49194812 -52185709 - L2 LINE L2 0 3272 3171 1001 247 110 77 chr15 49195316 49196011 -52184510 + L2 LINE L2 2585 3309 -4 191 326 98 23 chr15 49196093 49196225 -52184296 - L2 LINE L2 -970 2344 2203 1994 161 0 13 chr15 49196295 49196611 -52183910 + AluSx SINE Alu 1 312 0 24 0 0 0 chr15 49196667 49196691 -52183830 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr15 49196842 49196864 -52183657 + AT_rich Low_complexity Low_complexity 1 22 0 630 165 136 0 chr15 49196864 49196967 -52183554 - FLAM_C SINE Alu -25 118 2 2265 105 7 0 chr15 49197055 49197351 -52183170 + AluSp SINE Alu 1 298 -15 210 71 0 0 chr15 49197370 49197398 -52183123 + (CA)n Simple_repeat Simple_repeat 2 29 0 390 254 235 19 chr15 49197742 49198065 -52182456 - L1M4 LINE L1 -1488 4658 4266 2173 125 0 0 chr15 49198093 49198382 -52182139 - AluSx SINE Alu -23 289 1 556 301 81 71 chr15 49198395 49198570 -52181951 - L1M4 LINE L1 -1963 4183 4011 1430 201 35 0 chr15 49198570 49198853 -52181668 + AluJo SINE Alu 2 294 -18 556 301 81 71 chr15 49198853 49198866 -52181655 - L1M4 LINE L1 -2135 4011 4000 1775 177 11 0 chr15 49198866 49199149 -52181372 + AluJb SINE Alu 1 286 -26 556 301 81 71 chr15 49199149 49199646 -52180875 - L1M4 LINE L1 -2146 4000 3485 1646 160 4 8 chr15 49199646 49199930 -52180591 - AluJb SINE Alu 0 312 38 556 301 81 71 chr15 49199930 49200046 -52180475 - L1M4 LINE L1 -2661 3485 3372 1206 232 53 44 chr15 49201158 49201386 -52179135 - L1ME LINE L1 -413 5751 5527 2267 103 0 10 chr15 49201386 49201697 -52178824 + AluY SINE Alu 4 311 0 1206 232 53 44 chr15 49201697 49202010 -52178511 - L1ME LINE L1 -637 5527 5210 440 286 86 84 chr15 49202427 49202706 -52177815 - L2 LINE L2 -346 2968 2686 1528 178 129 75 chr15 49202706 49203188 -52177333 - Charlie4a DNA MER1_type 0 508 1 440 286 86 84 chr15 49203188 49203338 -52177183 - L2 LINE L2 -628 2686 2538 902 264 104 47 chr15 49203544 49204260 -52176261 - L1ME3A LINE L1 -149 6021 5176 2247 113 0 7 chr15 49204753 49205063 -52175458 - AluSg SINE Alu -2 308 1 1661 160 42 0 chr15 49205093 49205381 -52175140 + L1MC1 LINE L1 6016 6315 -18 2873 115 24 5 chr15 49205966 49206384 -52174137 + L1PA16 LINE L1 5738 6163 -3 1559 234 42 26 chr15 49206388 49206934 -52173587 + L1ME1 LINE L1 5287 6062 -104 479 209 157 0 chr15 49206996 49207111 -52173410 + L1MC4a LINE L1 5383 5515 -2293 1255 231 88 30 chr15 49207113 49207289 -52173232 + L1MC4a LINE L1 5557 5721 -2087 1502 49 0 27 chr15 49207289 49207474 -52173047 + L1PA6 LINE L1 5973 6152 -2 1255 231 88 30 chr15 49207474 49207738 -52172783 + L1MC4a LINE L1 5721 6023 -1785 7791 43 3 1 chr15 49207739 49209134 -52171387 + L1PA6 LINE L1 4757 6154 0 1083 230 98 62 chr15 49209204 49209652 -52170869 - L1ME3 LINE L1 -1 6161 5698 1834 250 107 63 chr15 49209665 49211276 -52169245 + L1MB8 LINE L1 5782 6178 0 * 1953 233 174 18 chr15 49210658 49211382 -52169139 + L1MC4 LINE L1 7064 7900 -142 258 211 0 0 chr15 49212542 49212599 -52167922 - MER102b DNA MER1_type -6 335 279 203 189 0 0 chr15 49212687 49212724 -52167797 + A-rich Low_complexity Low_complexity 1 37 0 744 253 95 55 chr15 49214034 49214522 -52165999 + L2 LINE L2 2795 3313 0 320 292 78 32 chr15 49214529 49214683 -52165838 - L2 LINE L2 0 3313 3153 352 180 34 34 chr15 49215185 49215274 -52165247 + MER102b DNA MER1_type 253 341 0 559 139 13 0 chr15 49215536 49215615 -52164906 - AluSg/x SINE Alu -15 294 215 1305 202 112 16 chr15 49215649 49216102 -52164419 - MLT1G3 LTR MaLR -4 526 1 539 261 92 16 chr15 49216106 49216290 -52164231 - MARNA DNA Mariner -246 340 143 388 214 29 0 chr15 49217020 49217090 -52163431 - MIR3 SINE MIR -22 186 115 472 262 55 69 chr15 49217232 49217434 -52163087 + MIR SINE MIR 18 216 -46 2341 89 0 49 chr15 49217702 49218028 -52162493 + AluY SINE Alu 1 310 -1 1068 256 85 98 chr15 49218152 49218272 -52162249 - MER115 DNA AcHobo 0 4031 3911 2001 125 7 33 chr15 49218272 49218576 -52161945 - AluSx SINE Alu -14 298 3 1068 256 85 98 chr15 49218576 49219162 -52161359 - MER115 DNA AcHobo -120 3911 3 848 188 0 0 chr15 49219545 49219678 -52160843 + FLAM_C SINE Alu 1 133 0 2048 146 7 0 chr15 49219863 49220172 -52160349 - AluSx SINE Alu -1 311 1 1865 120 78 0 chr15 49220941 49221225 -52159296 + AluSx SINE Alu 1 306 -6 2290 104 3 0 chr15 49222519 49222828 -52157693 - AluY SINE Alu -1 310 1 200 227 30 15 chr15 49223018 49223084 -52157437 - L2 LINE L2 -1357 1957 1891 1063 184 5 10 chr15 49223892 49224088 -52156433 + AluJo SINE Alu 118 312 0 2233 118 42 27 chr15 49224974 49225370 -52155151 - L1P4 LINE L1 -432 5734 5328 557 172 0 0 chr15 49225376 49225463 -52155058 - FLAM SINE Alu -12 131 45 350 300 97 6 chr15 49225481 49225811 -52154710 - L1M4 LINE L1 -865 5281 4922 1133 182 161 4 chr15 49225886 49226128 -52154393 - AluSg SINE Alu -30 280 1 524 300 38 9 chr15 49226281 49226491 -52154030 - L1M4 LINE L1 -1444 4702 4487 231 294 134 41 chr15 49227609 49227803 -52152718 - L2 LINE L2 -468 2846 2635 1111 237 12 8 chr15 49229644 49229889 -52150632 - MIR SINE MIR -3 259 14 222 37 0 0 chr15 49230729 49230756 -52149765 + (T)n Simple_repeat Simple_repeat 1 27 0 981 217 219 19 chr15 49230955 49231522 -52148999 + Charlie7 DNA MER1_type 1918 2597 -15 2941 94 3 0 chr15 49231765 49232128 -52148393 + THE1B LTR MaLR 1 364 0 1355 249 60 30 chr15 49232390 49232586 -52147935 + LTR16C LTR ERVL 2 191 -300 3956 102 0 4 chr15 49232586 49233097 -52147424 - MER9 LTR ERVK 0 511 3 1355 249 60 30 chr15 49233097 49233330 -52147191 + LTR16C LTR ERVL 191 444 -47 580 282 68 70 chr15 49233362 49234026 -52146495 - L1MEd LINE L1 -4668 1463 799 945 150 0 0 chr15 49234026 49234159 -52146362 - FLAM_C SINE Alu 0 133 1 580 282 68 70 chr15 49234159 49234340 -52146181 - L1MEd LINE L1 -5332 799 717 1887 121 54 0 chr15 49234340 49234620 -52145901 - AluJo SINE Alu -15 297 3 580 282 68 70 chr15 49234620 49234780 -52145741 - L1MEd LINE L1 -5414 717 558 1852 215 26 16 chr15 49234856 49235242 -52145279 + MLT1B LTR MaLR 1 390 0 379 285 85 35 chr15 49235268 49235468 -52145053 - L1MEd LINE L1 -5898 221 12 2197 107 20 0 chr15 49235630 49235930 -52144591 + AluSx SINE Alu 1 306 -6 838 99 0 0 chr15 49236724 49236835 -52143686 - AluSc SINE Alu -9 300 190 730 197 0 0 chr15 49238393 49238510 -52142011 - FLAM_C SINE Alu -16 117 1 1304 178 171 4 chr15 49238687 49238945 -52141576 + AluJo SINE Alu 2 302 0 340 318 82 15 chr15 49239941 49240271 -52140250 + L1MC5 LINE L1 7312 7663 -298 198 0 0 0 chr15 49240760 49240782 -52139739 + (A)n Simple_repeat Simple_repeat 1 22 0 1480 168 93 4 chr15 49241876 49242156 -52138365 + AluJo SINE Alu 4 308 -4 952 165 18 24 chr15 49242309 49242479 -52138042 + AluJo SINE Alu 118 286 -26 1190 250 37 18 chr15 49243177 49243505 -52137016 - L1MD3 LINE L1 -9 7986 7653 1002 117 62 19 chr15 49243506 49243668 -52136853 - AluJb SINE Alu -3 309 141 2458 120 30 8 chr15 49243671 49244038 -52136483 + THE1C LTR MaLR 1 375 0 252 122 0 0 chr15 49244039 49244088 -52136433 + LTR66 LTR ERVL 391 439 -171 280 72 14 58 chr15 49244111 49244180 -52136341 + (TA)n Simple_repeat Simple_repeat 1 66 0 643 120 0 74 chr15 49244218 49244326 -52136195 - AluJ/FLAM SINE Alu -211 101 2 2704 192 51 29 chr15 49244326 49244976 -52135545 - L1MC4a LINE L1 -315 7493 6830 295 183 113 0 chr15 49244982 49245053 -52135468 - L1MA9 LINE L1 -6 6306 6228 2109 129 0 3 chr15 49245291 49245578 -52134943 + AluSx SINE Alu 5 290 -22 978 160 33 6 chr15 49245688 49245869 -52134652 + L1M4 LINE L1 16 201 -6341 2612 109 51 9 chr15 49245869 49246299 -52134222 + LTR7 LTR ERV1 1 448 -2 7318 93 26 27 chr15 49246301 49247391 -52133130 + HERVH LTR ERV1 1 1089 -6624 14697 136 10 22 chr15 49247499 49249802 -52130719 + HERVH LTR ERV1 1719 3993 -3720 1854 116 9 14 chr15 49249785 49250095 -52130426 + HERVH LTR ERV1 3954 5144 -1947 * 5708 145 33 1 chr15 49250264 49251153 -52129368 + HERVH LTR ERV1 4233 5149 -2564 1389 129 18 5 chr15 49251154 49251371 -52129150 + HERVH LTR ERV1 5600 5819 -1894 * 2387 98 50 13 chr15 49251369 49251747 -52128774 + HERVH LTR ERV1 7322 7713 0 2691 74 93 29 chr15 49251747 49252168 -52128353 + LTR7 LTR ERV1 1 448 -2 547 197 79 118 chr15 49252170 49252207 -52128314 + L1M4 LINE L1 197 234 -6308 1859 241 14 81 chr15 49252207 49252863 -52127658 + LTR9 LTR ERV1 1 612 0 2289 117 16 29 chr15 49252863 49253239 -52127282 + THE1C LTR MaLR 5 375 0 547 197 79 118 chr15 49253239 49253428 -52127093 + L1M4 LINE L1 232 415 -6127 2936 135 28 7 chr15 49253428 49253886 -52126635 - MER41E LTR ERV1 0 512 45 925 136 0 0 chr15 49254028 49254153 -52126368 + FLAM_C SINE Alu 1 125 -18 770 214 11 45 chr15 49254164 49254282 -52126239 + L1M4 LINE L1 462 574 -5968 3218 99 24 2 chr15 49254282 49254736 -52125785 + MER4C LTR ERV1 1 464 -1 770 214 11 45 chr15 49254736 49254795 -52125726 + L1M4 LINE L1 574 633 -5909 771 186 36 0 chr15 49254804 49254944 -52125577 - MLT2C1 LTR ERVL -252 145 1 902 214 9 19 chr15 49255072 49255287 -52125234 + L1MC4 LINE L1 7829 8041 -1 254 207 0 0 chr15 49255298 49255356 -52125165 + L1ME LINE L1 5669 5726 -438 1148 166 81 122 chr15 49255356 49255674 -52124847 + AluJb SINE Alu 1 306 0 2291 104 0 10 chr15 49255736 49256044 -52124477 - AluSc SINE Alu -2 307 3 650 147 0 20 chr15 49256097 49256199 -52124322 + FLAM_A SINE Alu 20 119 -23 697 249 89 0 chr15 49256251 49256488 -52124033 - MIR SINE MIR -4 258 1 222 37 0 0 chr15 49256969 49256996 -52123525 + (T)n Simple_repeat Simple_repeat 1 27 0 204 40 0 0 chr15 49257451 49257476 -52123045 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 186 43 0 0 chr15 49258839 49258862 -52121659 + (A)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr15 49258957 49258980 -52121541 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr15 49259278 49259307 -52121214 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr15 49259354 49259378 -52121143 + AT_rich Low_complexity Low_complexity 1 24 0 252 86 0 0 chr15 49260351 49260386 -52120135 + (T)n Simple_repeat Simple_repeat 1 35 0 396 0 0 0 chr15 49261068 49261112 -52119409 + (A)n Simple_repeat Simple_repeat 1 44 0 2483 70 20 0 chr15 49261693 49261994 -52118527 + AluSx SINE Alu 1 307 -5 25 0 0 0 chr15 49264457 49264482 -52116039 + AT_rich Low_complexity Low_complexity 1 25 0 258 336 8 8 chr15 49265007 49265129 -52115392 + MIR3 SINE MIR 44 165 -43 184 313 131 0 chr15 49265126 49265225 -52115296 + MIR SINE MIR 102 213 -49 * 461 147 31 110 chr15 49266458 49266574 -52113947 - Charlie7 DNA MER1_type -36 2576 2475 1503 164 42 35 chr15 49266574 49266861 -52113660 - AluJb SINE Alu -23 289 1 461 147 31 110 chr15 49266861 49266907 -52113614 - Charlie7 DNA MER1_type -137 2475 2427 248 281 70 9 chr15 49267499 49267613 -52112908 - L2 LINE L2 -219 3053 2933 534 325 30 17 chr15 49269120 49269357 -52111164 + LTR16A LTR ERVL 211 450 0 2016 154 0 0 chr15 49269378 49269677 -52110844 + AluSx SINE Alu 1 299 -13 425 187 0 22 chr15 49269949 49270040 -52110481 - L2 LINE L2 -1015 2299 2211 207 167 0 0 chr15 49270959 49270995 -52109526 + GA-rich Low_complexity Low_complexity 2 37 0 541 222 104 7 chr15 49271536 49271680 -52108841 + MER103 DNA DNA 9 166 0 481 238 254 19 chr15 49271728 49271984 -52108537 + MER5C DNA MER1_type 9 324 0 440 69 21 41 chr15 49272281 49272365 -52108156 - MSTD LTR MaLR -286 79 1 327 260 48 55 chr15 49272366 49272512 -52108009 - MIR SINE MIR -61 201 57 830 156 112 49 chr15 49273106 49273330 -52107191 + L1MB8 LINE L1 5934 6171 -7 332 291 45 34 chr15 49275002 49275181 -52105340 - MIR SINE MIR -48 214 34 4049 122 6 6 chr15 49275701 49276334 -52104187 + L1MA4 LINE L1 5664 6296 -4 755 231 23 0 chr15 49278181 49278354 -52102167 - MER5B DNA MER1_type 0 178 2 412 212 277 0 chr15 49278368 49278505 -52102016 - MER5A DNA MER1_type -6 183 9 246 230 127 111 chr15 49278542 49278668 -52101853 + MER5A DNA MER1_type 12 139 -50 528 270 64 14 chr15 49278882 49279147 -52101374 + L1ME4a LINE L1 5444 5728 -393 181 231 0 77 chr15 49279195 49279247 -52101274 + L2 LINE L2 3189 3236 -36 520 274 89 25 chr15 49279259 49279427 -52101094 + L1ME4a LINE L1 5767 5923 -198 345 24 0 0 chr15 49279427 49279469 -52101052 + (TG)n Simple_repeat Simple_repeat 2 43 0 520 274 89 25 chr15 49279469 49279614 -52100907 + L1ME4a LINE L1 5923 6100 -21 647 75 11 0 chr15 49279654 49279748 -52100773 - L1PB1 LINE L1 -2 6149 6055 231 274 48 0 chr15 49279876 49279960 -52100561 + MER5A DNA MER1_type 77 166 -12 2494 67 0 0 chr15 49280103 49280400 -52100121 + AluY SINE Alu 1 297 -14 394 218 226 24 chr15 49280930 49281054 -52099467 - MER5A DNA MER1_type -2 187 39 1621 236 31 104 chr15 49281121 49281888 -52098633 + L1MC4 LINE L1 6379 7110 -932 387 0 0 0 chr15 49282113 49282156 -52098365 + (CA)n Simple_repeat Simple_repeat 2 44 0 2174 102 3 0 chr15 49282279 49282590 -52097931 - AluSq SINE Alu 0 312 1 1881 115 8 0 chr15 49282940 49283192 -52097329 + AluSx SINE Alu 43 296 -16 360 0 0 0 chr15 49283443 49283483 -52097038 + (CA)n Simple_repeat Simple_repeat 2 41 0 22 56 0 0 chr15 49283661 49283697 -52096824 + AT_rich Low_complexity Low_complexity 1 36 0 252 254 0 15 chr15 49284767 49284834 -52095687 + L2 LINE L2 3206 3271 -1 587 231 147 0 chr15 49284871 49285027 -52095494 - MER5A DNA MER1_type -2 187 9 183 204 107 68 chr15 49285558 49285661 -52094860 + L2 LINE L2 2930 3036 -236 369 0 0 0 chr15 49285688 49285729 -52094792 + (CA)n Simple_repeat Simple_repeat 2 42 0 221 304 163 0 chr15 49285754 49285846 -52094675 + L2 LINE L2 3141 3247 -25 665 280 49 49 chr15 49286293 49286597 -52093924 - L1ME LINE L1 -376 5786 5483 395 228 97 0 chr15 49286820 49286934 -52093587 - MIR3 SINE MIR -9 199 75 2119 79 10 27 chr15 49287086 49287378 -52093143 - AluSc SINE Alu -22 287 1 838 208 23 0 chr15 49289661 49289834 -52090687 + MER5B DNA MER1_type 2 178 0 1057 103 0 0 chr15 49290024 49290170 -52090351 - L1PA11 LINE L1 0 6174 6029 324 83 0 0 chr15 49297459 49297507 -52083014 + (TGG)n Simple_repeat Simple_repeat 1 48 0 192 40 0 0 chr15 49298003 49298028 -52082493 + (TC)n Simple_repeat Simple_repeat 1 25 0 336 83 0 0 chr15 49298029 49298077 -52082444 + (TG)n Simple_repeat Simple_repeat 2 49 0 23 0 0 0 chr15 49298122 49298145 -52082376 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr15 49298353 49298373 -52082148 + (CCG)n Simple_repeat Simple_repeat 3 22 0 232 237 37 118 chr15 49301085 49301220 -52079301 + L2 LINE L2 3189 3312 -1 243 0 0 0 chr15 49302360 49302387 -52078134 + (T)n Simple_repeat Simple_repeat 1 27 0 312 261 46 46 chr15 49305707 49305837 -52074684 - L1M4 LINE L1 -2944 3202 3073 204 265 19 19 chr15 49307988 49308150 -52072371 + CT-rich Low_complexity Low_complexity 3 164 0 22 35 0 0 chr15 49308564 49308593 -52071928 + AT_rich Low_complexity Low_complexity 1 29 0 468 0 0 0 chr15 49309407 49309459 -52071062 + (TG)n Simple_repeat Simple_repeat 2 53 0 189 0 0 0 chr15 49309756 49309777 -52070744 + (CTG)n Simple_repeat Simple_repeat 2 22 0 25 31 0 0 chr15 49313912 49313944 -52066577 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr15 49314114 49314134 -52066387 + (CGG)n Simple_repeat Simple_repeat 2 21 0 598 248 158 13 chr15 49316860 49317075 -52063446 + MIR SINE MIR 17 257 -5 1406 160 46 36 chr15 49319194 49319500 -52061021 - AluJo SINE Alu -3 309 1 182 130 109 43 chr15 49320120 49320166 -52060355 - L3b LINE CR1 -3 1580 1532 909 271 79 75 chr15 49320298 49320781 -52059740 + MLT1J LTR MaLR 27 511 0 2040 111 21 0 chr15 49320932 49321221 -52059300 + AluSx SINE Alu 1 295 -17 1475 197 4 11 chr15 49321235 49321514 -52059007 - AluJo SINE Alu -35 277 1 1860 194 66 16 chr15 49321516 49321893 -52058628 + MSTD LTR MaLR 1 396 0 298 216 68 0 chr15 49321893 49321981 -52058540 + MER20B DNA MER1_type 558 651 -132 2148 82 10 13 chr15 49322282 49322585 -52057936 - AluSg SINE Alu -7 303 2 234 428 14 7 chr15 49324248 49324393 -52056128 - L2 LINE L2 -433 2881 2736 14889 81 15 1 chr15 49324504 49325138 -52055383 - L1PA7 LINE L1 0 6154 5530 1975 101 31 7 chr15 49325138 49325424 -52055097 + AluSp SINE Alu 3 295 -18 14889 81 15 1 chr15 49325424 49327602 -52052919 - L1PA7 LINE L1 -624 5530 3322 649 297 59 59 chr15 49327602 49327992 -52052529 - L2 LINE L2 -611 2703 2314 248 89 0 22 chr15 49328790 49328835 -52051686 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 536 246 0 9 chr15 49328845 49328959 -52051562 - MER81 DNA DNA 0 114 2 200 176 0 0 chr15 49328963 49328997 -52051524 + (TG)n Simple_repeat Simple_repeat 1 34 0 2129 92 0 22 chr15 49329596 49329912 -52050609 + AluSc SINE Alu 1 309 0 204 188 43 0 chr15 49330132 49330201 -52050320 + (TA)n Simple_repeat Simple_repeat 2 73 0 1732 153 21 0 chr15 49330311 49330593 -52049928 + AluSx SINE Alu 7 294 -18 489 301 116 44 chr15 49330784 49331173 -52049348 - L1MC4a LINE L1 -1882 5926 5510 740 297 93 13 chr15 49331666 49331902 -52048619 + MIR SINE MIR 2 256 -6 193 174 65 0 chr15 49332397 49332443 -52048078 + L2 LINE L2 3264 3312 -1 180 0 0 0 chr15 49332768 49332788 -52047733 + (CATTC)n Simple_repeat Simple_repeat 2 21 0 38939 75 3 8 chr15 49332925 49338876 -52041645 + L1PA6 LINE L1 239 6152 -2 484 276 78 58 chr15 49339090 49339168 -52041353 - L1ME3A LINE L1 -293 5877 5802 2376 42 0 0 chr15 49339168 49339452 -52041069 - AluY SINE Alu -14 297 14 484 276 78 58 chr15 49339452 49339616 -52040905 - L1ME3A LINE L1 -368 5802 5630 367 233 135 8 chr15 49339655 49339788 -52040733 - L1ME3A LINE L1 -643 5523 5374 609 273 49 72 chr15 49339790 49339914 -52040607 - L1ME4a LINE L1 -187 5934 5809 1841 170 3 10 chr15 49339914 49340225 -52040296 - AluSx SINE Alu -3 309 1 609 273 49 72 chr15 49340225 49340489 -52040032 - L1ME4a LINE L1 -312 5809 5555 186 324 162 0 chr15 49340975 49341043 -52039478 - L2 LINE L2 -8 3305 3227 309 271 130 78 chr15 49342519 49342803 -52037718 - L1MC4a LINE L1 -1667 6141 5843 206 346 159 0 chr15 49342820 49342927 -52037594 - L2 LINE L2 -8 3305 3182 365 103 15 0 chr15 49343301 49343369 -52037152 + (TG)n Simple_repeat Simple_repeat 2 70 0 204 231 261 0 chr15 49344042 49344107 -52036414 - L3 LINE CR1 -183 1394 1313 743 260 73 62 chr15 49344173 49344834 -52035687 - L1MC5 LINE L1 -34 7927 7260 206 215 92 100 chr15 49344908 49345038 -52035483 + MER5A DNA MER1_type 60 188 -1 473 251 36 2 chr15 49345070 49345264 -52035257 + MLT2B1 LTR ERVL 1 202 -212 718 206 13 27 chr15 49345515 49345692 -52034829 + MLT2B1 LTR ERVL 321 493 -22 256 111 37 74 chr15 49345709 49345763 -52034758 + MLT2B1 LTR ERVL 466 517 -3 461 191 19 19 chr15 49345794 49345899 -52034622 + MER103 DNA DNA 55 159 -7 2588 125 20 20 chr15 49345901 49346272 -52034249 + MSTB LTR MaLR 1 374 -52 2511 99 57 8 chr15 49346272 49346655 -52033866 - L1PA10 LINE L1 0 6168 5767 2588 125 20 20 chr15 49346655 49346684 -52033837 + MSTB LTR MaLR 373 401 -25 307 311 58 24 chr15 49346768 49346974 -52033547 - L3 LINE CR1 -264 1313 1101 483 227 176 11 chr15 49347180 49347356 -52033165 - MLT1K LTR MaLR -65 523 319 241 266 0 0 chr15 49347656 49347720 -52032801 - MIR SINE MIR -82 126 63 362 315 9 9 chr15 49349557 49349668 -52030853 + CT-rich Low_complexity Low_complexity 2 112 0 7440 47 0 1 chr15 49350172 49350597 -52029924 + L1PA5 LINE L1 4584 5008 -1146 2332 56 0 21 chr15 49350597 49350907 -52029614 - AluY SINE Alu 0 305 2 7440 47 0 1 chr15 49350907 49352065 -52028456 + L1PA5 LINE L1 5008 6149 -5 227 313 0 24 chr15 49352105 49352188 -52028333 - MIR SINE MIR -2 260 180 1867 142 76 33 chr15 49352212 49352579 -52027942 + MLT1B LTR MaLR 1 383 -7 603 250 0 8 chr15 49353696 49353828 -52026693 + MIR3 SINE MIR 39 169 -39 371 299 24 31 chr15 49354212 49354289 -52026232 - L2 LINE L2 -11 3261 3184 1956 153 3 7 chr15 49354289 49354583 -52025938 + AluJb SINE Alu 1 293 -19 371 299 24 31 chr15 49354583 49354632 -52025889 - L2 LINE L2 -88 3184 3136 2016 139 18 52 chr15 49355470 49355858 -52024663 - THE1C LTR MaLR 0 375 1 491 261 27 17 chr15 49357412 49357594 -52022927 + MIR SINE MIR 31 206 -56 1369 176 0 8 chr15 49359269 49359507 -52021014 + MER46A DNA MER2_type 1 236 0 297 0 0 0 chr15 49359577 49359610 -52020911 + (TG)n Simple_repeat Simple_repeat 2 34 0 29 0 0 0 chr15 49359733 49359762 -52020759 + AT_rich Low_complexity Low_complexity 1 29 0 602 244 65 83 chr15 49360072 49360223 -52020298 - L1MC5 LINE L1 -35 7926 7774 935 168 6 0 chr15 49360223 49360384 -52020137 - FRAM SINE Alu 0 166 5 602 244 65 83 chr15 49360384 49360666 -52019855 - L1MC5 LINE L1 -187 7774 7501 1211 214 82 20 chr15 49360666 49360969 -52019552 - MER2 DNA MER2_type 0 345 24 504 293 7 7 chr15 49361026 49361176 -52019345 + MIR3 SINE MIR 30 179 -29 594 313 179 27 chr15 49361519 49361995 -52018526 - L3 LINE CR1 -3 1574 1027 1990 140 31 0 chr15 49365174 49365467 -52015054 + AluSx SINE Alu 11 312 0 347 137 36 129 chr15 49365467 49365606 -52014915 + L1MC5 LINE L1 7819 7944 -17 404 250 18 18 chr15 49367675 49367787 -52012734 + MIR3 SINE MIR 90 201 -7 241 244 26 13 chr15 49368933 49369011 -52011510 - LTR67 LTR ERVL -5 552 474 412 331 63 0 chr15 49369297 49369439 -52011082 - LTR67 LTR ERVL -368 189 39 2387 106 23 17 chr15 49369605 49369955 -52010566 + THE1C LTR MaLR 1 352 -23 940 208 66 0 chr15 49370095 49370321 -52010200 + LTR16C LTR ERVL 241 481 -10 207 0 0 0 chr15 49370454 49370477 -52010044 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 361 233 33 92 chr15 49371585 49371630 -52008891 - L2 LINE L2 -16 3297 3251 836 240 36 44 chr15 49371630 49371804 -52008717 - MER58A DNA MER1_type -2197 223 50 1771 183 0 3 chr15 49371804 49372094 -52008427 + AluJo SINE Alu 3 291 -21 836 240 36 44 chr15 49372094 49372144 -52008377 - MER58A DNA MER1_type -2370 50 1 361 233 33 92 chr15 49372144 49372218 -52008303 - L2 LINE L2 -62 3251 3185 1116 250 105 33 chr15 49372651 49372756 -52007765 + L2 LINE L2 2584 2680 -633 2240 116 0 10 chr15 49372756 49373050 -52007471 + AluSx SINE Alu 1 291 -21 1116 250 105 33 chr15 49373050 49373608 -52006913 + L2 LINE L2 2680 3288 -25 1343 164 131 40 chr15 49373609 49373907 -52006614 - THE1A LTR MaLR 0 355 31 2368 86 3 32 chr15 49374008 49374323 -52006198 - AluSg SINE Alu -4 306 1 236 216 111 92 chr15 49375977 49376130 -52004391 - L1ME4a LINE L1 -2 6119 5964 404 226 75 0 chr15 49377514 49377620 -52002901 - L2 LINE L2 -8 3305 3192 958 216 15 0 chr15 49378111 49378315 -52002206 - LTR16A1 LTR ERVL -5 452 246 446 273 7 53 chr15 49378360 49378510 -52002011 - LTR16A1 LTR ERVL -306 151 9 256 367 36 28 chr15 49378588 49378980 -52001541 - L2 LINE L2 -746 2568 2174 531 254 82 26 chr15 49379978 49380254 -52000267 - L1ME1 LINE L1 -9 6155 5912 2064 108 0 0 chr15 49380260 49380529 -51999992 + AluSq SINE Alu 27 295 -18 210 221 59 44 chr15 49381558 49381626 -51998895 - MIR SINE MIR -123 139 71 707 253 52 0 chr15 49382805 49382959 -51997562 + MER96 DNA MER1_type? 14 175 0 681 243 44 34 chr15 49383636 49383842 -51996679 + MIR SINE MIR 52 259 -3 259 307 88 18 chr15 49384663 49384777 -51995744 + MIR SINE MIR 30 151 -57 312 151 0 54 chr15 49385829 49385922 -51994599 + CT-rich Low_complexity Low_complexity 2 89 0 216 67 0 0 chr15 49386204 49386234 -51994287 + (T)n Simple_repeat Simple_repeat 1 30 0 180 125 0 0 chr15 49386917 49386949 -51993572 + (TG)n Simple_repeat Simple_repeat 1 32 0 505 333 33 29 chr15 49388657 49388900 -51991621 + MIR SINE MIR 9 252 -10 406 262 56 0 chr15 49390545 49390652 -51989869 + MIR SINE MIR 34 146 -62 340 330 89 8 chr15 49391156 49391392 -51989129 + L2 LINE L2 2404 2658 -656 205 262 0 33 chr15 49391710 49391771 -51988750 + L2 LINE L2 3010 3068 -245 287 322 0 22 chr15 49391828 49391918 -51988603 - MIR SINE MIR -128 134 47 191 286 63 16 chr15 49391924 49391987 -51988534 - MIR SINE MIR -188 74 9 567 236 30 42 chr15 49391987 49392152 -51988369 + MER117 DNA MER1_type 1 163 -34 2272 102 0 10 chr15 49392364 49392669 -51987852 - AluSx SINE Alu -10 302 1 396 312 151 19 chr15 49393525 49393849 -51986672 + L2 LINE L2 2343 2709 -605 237 67 0 0 chr15 49393943 49393973 -51986548 - LTR6A LTR ERV1 -462 102 73 4894 144 5 14 chr15 49394894 49395702 -51984819 - L1MC1 LINE L1 -14 6319 5519 3313 160 93 152 chr15 49395741 49396003 -51984518 + L1MA10 LINE L1 3313 3589 -2557 1039 175 0 11 chr15 49396003 49396180 -51984341 - FRAM SINE Alu -1 175 1 3313 160 93 152 chr15 49396180 49396965 -51983556 + L1MA10 LINE L1 3589 4464 -1682 * 5012 187 10 18 chr15 49396954 49398122 -51982399 + L1MA10 LINE L1 5176 6334 0 565 327 138 4 chr15 49398128 49398547 -51981974 + L2 LINE L2 2713 3280 -33 270 307 34 0 chr15 49398583 49398671 -51981850 + MIR3 SINE MIR 97 187 -21 791 131 7 7 chr15 49398705 49398850 -51981671 - L1PA13 LINE L1 0 6163 6019 187 320 0 0 chr15 49399325 49399375 -51981146 + L2 LINE L2 3258 3307 -6 260 277 141 96 chr15 49400022 49400242 -51980279 + MIR SINE MIR 32 261 -1 298 267 158 42 chr15 49400477 49400597 -51979924 + L2 LINE L2 3180 3313 0 441 343 59 31 chr15 49400862 49401148 -51979373 - L1MC4a LINE L1 -1926 5882 5589 378 285 151 52 chr15 49402716 49403062 -51977459 - L1ME4a LINE L1 -103 6018 5610 240 317 16 73 chr15 49403700 49403934 -51976587 - L2 LINE L2 -5 3308 3005 420 267 92 34 chr15 49403950 49404242 -51976279 + L1ME2 LINE L1 5621 5929 -235 11826 154 19 17 chr15 49405899 49409410 -51971111 - L1MA3 LINE L1 0 6305 2785 2020 194 47 0 chr15 49410105 49410548 -51969973 - L1ME1 LINE L1 -4 6957 6494 11849 133 15 85 chr15 49410560 49413058 -51967463 + L1PA2 LINE L1 13 2334 -3812 20231 58 0 2 chr15 49413058 49416494 -51964027 + L1PA2 LINE L1 2711 6155 0 2985 70 0 0 chr15 49416494 49416872 -51963649 + L1PA6 LINE L1 5770 6153 -1 3428 225 45 28 chr15 49416873 49418308 -51962213 - L1ME1 LINE L1 -458 6503 5052 316 138 86 0 chr15 49418325 49418383 -51962138 - L1MC1 LINE L1 -1 6332 6270 1860 223 13 22 chr15 49418386 49418924 -51961597 + L1MC/D LINE L1 4243 4775 -1371 2677 190 12 13 chr15 49418927 49419672 -51960849 + L1MC/D LINE L1 5006 5749 -584 1766 244 29 24 chr15 49419670 49420253 -51960268 - L1ME1 LINE L1 -1878 5063 4478 * 1391 272 159 57 chr15 49420250 49421531 -51958990 - L1ME1 LINE L1 -4902 1521 110 * 26 30 0 0 chr15 49421564 49421597 -51958924 + AT_rich Low_complexity Low_complexity 1 33 0 2213 97 3 24 chr15 49421756 49422054 -51958467 - AluSx SINE Alu -20 292 1 263 227 154 27 chr15 49422194 49422304 -51958217 + MER117 DNA MER1_type 44 167 -30 354 74 0 0 chr15 49423040 49423094 -51957427 + (TG)n Simple_repeat Simple_repeat 2 55 0 335 364 61 17 chr15 49423775 49424069 -51956452 + L2 LINE L2 1510 1816 -1498 265 208 151 0 chr15 49424953 49425006 -51955515 + MER91A DNA MER1_type 1 61 -135 187 261 0 92 chr15 49425316 49425381 -51955140 - L2 LINE L2 -20 3293 3235 589 118 0 132 chr15 49425477 49425613 -51954908 + AluJ SINE Alu 16 133 -179 180 111 0 0 chr15 49425613 49425640 -51954881 + (A)n Simple_repeat Simple_repeat 1 27 0 917 184 89 0 chr15 49425641 49425809 -51954712 + AluJ SINE Alu 120 302 -10 186 364 26 13 chr15 49426379 49426456 -51954065 + MIR SINE MIR 11 88 -174 407 255 62 28 chr15 49426478 49426623 -51953898 - MIR SINE MIR 0 262 113 779 264 71 29 chr15 49426705 49426944 -51953577 + MIR SINE MIR 6 254 -8 5097 117 27 1 chr15 49427144 49427951 -51952570 + L1MA5A LINE L1 5468 6295 -2 1164 127 17 89 chr15 49428674 49428910 -51951611 - MER20 DNA MER1_type 0 219 1 197 203 0 94 chr15 49429261 49429325 -51951196 + L3 LINE CR1 1040 1097 -480 2753 97 17 52 chr15 49430033 49430509 -51950012 - L1PA8A LINE L1 -1 6130 5672 229 326 122 39 chr15 49430567 49430748 -51949773 - L2 LINE L2 -2 3270 3075 23 54 0 0 chr15 49430792 49430829 -51949692 + AT_rich Low_complexity Low_complexity 1 37 0 1820 183 0 3 chr15 49430829 49431119 -51949402 - AluJo SINE Alu -23 289 1 205 192 56 176 chr15 49433875 49434000 -51946521 - MIR SINE MIR 0 262 153 457 279 36 7 chr15 49434051 49434191 -51946330 + MIR SINE MIR 49 192 -70 234 199 133 73 chr15 49434712 49434863 -51945658 - L1ME4a LINE L1 -1 6120 5961 348 24 0 0 chr15 49434863 49434904 -51945617 + (CA)n Simple_repeat Simple_repeat 1 41 0 802 72 0 0 chr15 49434936 49435047 -51945474 - L1PA13 LINE L1 -1 6162 6052 454 224 80 35 chr15 49435055 49435229 -51945292 - MLT1B LTR MaLR -30 525 330 940 115 19 6 chr15 49435338 49435495 -51945026 - L1PA12 LINE L1 -118 6050 5892 778 267 93 68 chr15 49435542 49436025 -51944496 - MLT1H1 LTR MaLR 0 555 61 1298 167 49 4 chr15 49436058 49436303 -51944218 - MLT1D LTR MaLR 0 505 250 255 235 111 0 chr15 49436356 49436437 -51944084 - MLT1D LTR MaLR -505 90 1 228 333 156 22 chr15 49436543 49436774 -51943747 - L1ME LINE L1 -374 5747 5486 6305 190 47 22 chr15 49436821 49439331 -51941190 - L1MA9 LINE L1 0 6312 3734 319 281 122 7 chr15 49439348 49439487 -51941034 - L1ME LINE L1 -701 5420 5266 955 287 47 32 chr15 49440619 49440999 -51939522 - L2 LINE L2 -18 3295 2910 260 206 0 79 chr15 49441939 49442002 -51938519 + L2 LINE L2 3214 3271 -1 197 262 71 48 chr15 49442167 49442251 -51938270 + MIR SINE MIR 8 93 -169 378 206 29 66 chr15 49442589 49442725 -51937796 + MLT1H LTR MaLR 401 531 -18 1470 209 43 29 chr15 49443494 49443868 -51936653 - MLT1B LTR MaLR -11 379 1 428 309 50 0 chr15 49444476 49444615 -51935906 + L2 LINE L2 3126 3271 -1 211 370 40 0 chr15 49444882 49444982 -51935539 + MIR SINE MIR 20 123 -139 255 268 98 32 chr15 49447353 49447476 -51933045 + MIR SINE MIR 84 214 -48 1397 53 5 7 chr15 49447486 49447737 -51932784 + (TTTC)n Simple_repeat Simple_repeat 1 428 0 891 157 182 0 chr15 49450054 49450213 -51930308 + MER5A DNA MER1_type 1 188 -1 250 167 0 0 chr15 49450860 49450902 -51929619 + MIR SINE MIR 162 203 -59 2241 135 30 30 chr15 49453072 49453436 -51927085 - THE1B LTR MaLR 0 364 1 1055 147 45 0 chr15 49455844 49456021 -51924500 - L1PB1 LINE L1 -8 6143 5959 315 149 257 0 chr15 49457378 49457452 -51923069 - MIR SINE MIR -62 146 54 1647 185 7 26 chr15 49457728 49458036 -51922485 + AluJo SINE Alu 1 302 -10 661 239 57 6 chr15 49458243 49458402 -51922119 + L2 LINE L2 2651 2817 -497 774 284 166 15 chr15 49458413 49458613 -51921908 + L2 LINE L2 2933 3101 -212 549 80 0 0 chr15 49458613 49458688 -51921833 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 774 284 166 15 chr15 49458688 49458818 -51921703 + L2 LINE L2 3101 3313 0 2647 142 42 2 chr15 49458868 49459276 -51921245 - MSTB LTR MaLR -2 424 1 711 287 24 36 chr15 49463904 49464155 -51916366 - MIR SINE MIR -3 259 12 1377 66 0 39 chr15 49464288 49464470 -51916051 + AluY SINE Alu 107 281 -30 397 0 19 19 chr15 49464473 49464527 -51915994 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 692 229 70 48 chr15 49464536 49464763 -51915758 + MIR SINE MIR 31 262 0 587 201 215 0 chr15 49464939 49465083 -51915438 + MER5B DNA MER1_type 3 177 -1 210 217 65 0 chr15 49465391 49465437 -51915084 + MIR SINE MIR 105 153 -109 3417 61 5 0 chr15 49465878 49466285 -51914236 + L1PA8 LINE L1 5764 6172 0 264 59 0 0 chr15 49466382 49466416 -51914105 + (TC)n Simple_repeat Simple_repeat 2 35 0 650 290 37 20 chr15 49466761 49467006 -51913515 - MER102b DNA MER1_type -6 335 87 213 286 0 0 chr15 49468344 49468400 -51912121 + L3 LINE CR1 1520 1575 -2 603 232 8 0 chr15 49468501 49468626 -51911895 - L2 LINE L2 0 3313 3188 232 243 15 22 chr15 49469223 49469359 -51911162 + CT-rich Low_complexity Low_complexity 1 135 0 303 146 0 0 chr15 49469689 49469744 -51910777 + (CAA)n Simple_repeat Simple_repeat 3 57 0 210 242 48 16 chr15 49470228 49470290 -51910231 - MIR SINE MIR -4 258 195 25 0 0 0 chr15 49470295 49470320 -51910201 + AT_rich Low_complexity Low_complexity 1 25 0 3232 30 0 3 chr15 49470320 49470681 -51909840 - L1PA3 LINE L1 0 6155 5796 199 343 57 71 chr15 49470817 49471027 -51909494 + L2 LINE L2 2555 2761 -553 188 338 65 0 chr15 49471708 49471785 -51908736 + MIR3 SINE MIR 113 194 -14 267 307 40 60 chr15 49471831 49471981 -51908540 - L2 LINE L2 0 3272 3126 302 294 287 0 chr15 49472077 49472213 -51908308 + MER5A DNA MER1_type 8 182 -7 436 254 136 0 chr15 49472223 49472333 -51908188 - MIR3 SINE MIR -52 156 32 252 0 0 0 chr15 49472977 49473005 -51907516 + (T)n Simple_repeat Simple_repeat 1 28 0 184 339 15 0 chr15 49473618 49473683 -51906838 - L2 LINE L2 -13 3259 3194 5891 134 23 33 chr15 49473837 49474876 -51905645 + L1MA4 LINE L1 5269 6297 -3 3030 159 26 25 chr15 49474881 49475448 -51905073 + L1MB7 LINE L1 5598 6165 -19 430 284 40 103 chr15 49475875 49476252 -51904269 + MLT1I LTR MaLR 47 399 -10 296 355 32 16 chr15 49477044 49477168 -51903353 - MIR SINE MIR -109 153 28 670 275 77 67 chr15 49477638 49477799 -51902722 - L2 LINE L2 -1 3312 3154 2645 164 32 32 chr15 49477799 49478304 -51902217 + MLT1D LTR MaLR 1 505 0 670 275 77 67 chr15 49478304 49478546 -51901975 - L2 LINE L2 -159 3154 2905 309 109 0 0 chr15 49478599 49478645 -51901876 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 408 276 0 0 chr15 49478663 49478750 -51901771 - L2 LINE L2 0 3313 3227 2039 120 23 23 chr15 49478831 49479140 -51901381 - AluSg SINE Alu -1 309 1 182 275 0 0 chr15 49480581 49480621 -51899900 + L2 LINE L2 3226 3265 -7 213 277 46 0 chr15 49481821 49481886 -51898635 - MIR3 SINE MIR -2 206 139 308 354 62 0 chr15 49481960 49482056 -51898465 + L2 LINE L2 3147 3248 -24 348 335 80 25 chr15 49482082 49482282 -51898239 - MIR SINE MIR -31 231 21 1530 160 38 0 chr15 49483362 49483625 -51896896 + AluSx SINE Alu 3 275 -37 214 167 0 0 chr15 49485117 49485153 -51895368 + (CA)n Simple_repeat Simple_repeat 1 36 0 427 268 41 8 chr15 49486554 49486677 -51893844 + MIR SINE MIR 82 208 -54 214 330 110 8 chr15 49486769 49486887 -51893634 - MIR SINE MIR -5 257 128 344 286 57 21 chr15 49488144 49488284 -51892237 + MIR SINE MIR 118 262 0 292 271 35 0 chr15 49488292 49488377 -51892144 + MIR SINE MIR 167 254 -8 1162 282 79 13 chr15 49489367 49489821 -51890700 + LTR16C LTR ERVL 1 484 -7 186 43 0 0 chr15 49489850 49489873 -51890648 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 224 315 14 0 chr15 49489981 49490054 -51890467 + L2 LINE L2 3235 3308 -5 341 294 14 56 chr15 49490095 49490255 -51890266 + MIR3 SINE MIR 28 181 -27 216 216 0 0 chr15 49491193 49491244 -51889277 + CT-rich Low_complexity Low_complexity 3 53 0 288 0 0 0 chr15 49493843 49493875 -51886646 + (TG)n Simple_repeat Simple_repeat 2 33 0 946 234 113 0 chr15 49494402 49494633 -51885888 - MIR SINE MIR 0 262 6 203 183 33 17 chr15 49494964 49495024 -51885497 + A-rich Low_complexity Low_complexity 5 65 0 28 29 0 0 chr15 49495925 49495960 -51884561 + AT_rich Low_complexity Low_complexity 1 35 0 1395 171 8 0 chr15 49495966 49496205 -51884316 - L1MA6 LINE L1 -4 6296 6056 2630 144 44 22 chr15 49496205 49496695 -51883826 - L1 LINE L1 -897 5249 4746 204 40 0 0 chr15 49496695 49496720 -51883801 + (TG)n Simple_repeat Simple_repeat 2 26 0 580 171 23 6 chr15 49496730 49496905 -51883616 + (TA)n Simple_repeat Simple_repeat 2 179 0 1752 171 0 27 chr15 49496908 49497206 -51883315 - AluJb SINE Alu -22 290 1 1830 122 0 0 chr15 49497206 49497477 -51883044 - L1 LINE L1 -1399 4747 4477 722 213 41 35 chr15 49497483 49497680 -51882841 + L1M4 LINE L1 3633 3830 -2316 * 20247 165 17 4 chr15 49497679 49498204 -51882317 - L1PA13 LINE L1 0 6814 6297 2056 165 44 14 chr15 49498204 49498568 -51881953 + THE1C LTR MaLR 1 375 0 20247 165 17 4 chr15 49498568 49503025 -51877496 - L1PA13 LINE L1 -517 6297 1768 338 188 14 0 chr15 49503070 49503139 -51877382 + L1M2 LINE L1 5432 5501 -799 824 151 70 0 chr15 49503151 49503350 -51877171 - L1 LINE L1 -2982 3164 2952 216 0 0 0 chr15 49503765 49503789 -51876732 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 420 360 81 9 chr15 49504340 49504562 -51875959 + MIR SINE MIR 17 254 -8 1294 251 55 49 chr15 49505164 49505635 -51874886 + LTR33 LTR ERVL 1 474 -47 22 0 0 0 chr15 49506245 49506267 -51874254 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr15 49506377 49506419 -51874102 + AT_rich Low_complexity Low_complexity 1 42 0 6282 91 9 3 chr15 49506428 49508134 -51872387 + L1PA13 LINE L1 4459 6161 -2 585 258 122 14 chr15 49508313 49508526 -51871995 - MIR SINE MIR -10 252 17 2379 109 0 0 chr15 49510081 49510442 -51870079 - AluY SINE Alu 0 361 1 412 313 94 78 chr15 49510695 49511203 -51869318 + L2 LINE L2 2543 3073 -199 578 261 4 41 chr15 49512271 49512516 -51868005 - L1ME LINE L1 -303 5818 5583 231 146 0 0 chr15 49513800 49513841 -51866680 + (TTTTC)n Simple_repeat Simple_repeat 3 43 0 324 324 183 29 chr15 49514450 49515067 -51865454 + L2 LINE L2 1912 2623 -691 1555 222 57 26 chr15 49515906 49516361 -51864160 - Charlie4a DNA MER1_type -19 489 21 449 286 15 0 chr15 49516489 49516622 -51863899 - MLT1J LTR MaLR -316 195 61 2111 112 20 13 chr15 49516623 49516927 -51863594 + AluSq SINE Alu 1 306 -7 21 0 0 0 chr15 49517230 49517251 -51863270 + AT_rich Low_complexity Low_complexity 1 21 0 904 252 109 28 chr15 49517260 49517473 -51863048 - L2 LINE L2 0 3313 3064 2037 201 59 97 chr15 49517473 49518153 -51862368 + MLT1E1 LTR MaLR 1 654 0 904 252 109 28 chr15 49518153 49518261 -51862260 - L2 LINE L2 -249 3064 2966 1039 265 135 17 chr15 49518269 49518737 -51861784 - L2 LINE L2 -618 2696 2174 2708 90 0 0 chr15 49518815 49519170 -51861351 - THE1A LTR MaLR 0 355 1 10694 94 6 8 chr15 49519183 49520739 -51859782 - THE1A-int LTR MaLR -27 1553 1 2634 101 0 3 chr15 49520739 49521095 -51859426 - THE1A LTR MaLR 0 355 1 269 204 23 114 chr15 49521095 49521183 -51859338 - MIR SINE MIR -95 113 34 1392 201 19 29 chr15 49522223 49522531 -51857990 - AluJo SINE Alu -7 305 1 281 260 135 19 chr15 49523303 49523407 -51857114 + L2 LINE L2 3153 3268 -4 206 380 10 10 chr15 49523496 49523596 -51856925 - L2 LINE L2 0 3272 3173 412 244 75 12 chr15 49523643 49523803 -51856718 - L1MC/D LINE L1 -1999 5809 5640 190 194 90 30 chr15 49524014 49524081 -51856440 + MER5C DNA MER1_type 9 79 -245 9308 207 64 15 chr15 49524515 49526317 -51854204 - L1PA16 LINE L1 -5 6864 5151 2061 123 3 3 chr15 49526317 49526617 -51853904 + AluSx SINE Alu 5 304 -8 9308 207 64 15 chr15 49526617 49528368 -51852153 - L1PA16 LINE L1 -1718 5151 3139 2939 165 13 6 chr15 49528370 49528897 -51851624 - L1PA16 LINE L1 -6318 531 1 289 333 83 30 chr15 49529196 49529328 -51851193 - L2 LINE L2 -1 3271 3133 2143 265 139 35 chr15 49529797 49530246 -51850275 + L1ME3A LINE L1 2814 3215 -2955 261 98 0 0 chr15 49530246 49530287 -51850234 + (CA)n Simple_repeat Simple_repeat 2 42 0 2143 265 139 35 chr15 49530287 49531299 -51849222 + L1ME3A LINE L1 3215 4120 -2050 2610 99 6 0 chr15 49531299 49531652 -51848869 + THE1A LTR MaLR 1 355 0 2143 265 139 35 chr15 49531652 49533037 -51847484 + L1ME3A LINE L1 4120 5962 -208 2024 156 55 31 chr15 49533191 49533732 -51846789 - MLT2A2 LTR ERVL 0 554 1 6554 125 8 15 chr15 49533772 49535076 -51845445 - L1MA2 LINE L1 0 7723 6427 2824 115 34 13 chr15 49535095 49535676 -51844845 - L1MA2 LINE L1 -3822 3743 3157 448 162 36 27 chr15 49535670 49535781 -51844740 - L1MA2 LINE L1 -7438 127 16 * 273 267 115 51 chr15 49535839 49536135 -51844386 + L1MC4a LINE L1 5592 5906 -1902 401 295 16 16 chr15 49536385 49536507 -51844014 - MIR SINE MIR -94 168 47 303 28 0 0 chr15 49536549 49536585 -51843936 + (GA)n Simple_repeat Simple_repeat 2 37 0 257 298 44 55 chr15 49536997 49537178 -51843343 + L2 LINE L2 2474 2652 -662 352 344 72 77 chr15 49537193 49537556 -51842965 - L2 LINE L2 0 3272 2912 1837 268 95 9 chr15 49537751 49538310 -51842211 + MLT2E LTR ERVL 22 628 0 198 321 18 80 chr15 49538339 49538451 -51842070 + L2 LINE L2 2955 3059 -213 942 205 22 0 chr15 49540426 49540611 -51839910 + MER5A DNA MER1_type 1 189 0 306 291 34 26 chr15 49542102 49542219 -51838302 + MIR3 SINE MIR 81 198 -10 190 387 189 0 chr15 49542932 49543038 -51837483 + L2 LINE L2 3147 3272 0 188 257 0 0 chr15 49543869 49543904 -51836617 - MIR SINE MIR -124 84 50 2140 121 0 10 chr15 49543929 49544234 -51836287 - AluSg SINE Alu -8 302 1 252 0 0 0 chr15 49544241 49544269 -51836252 + (T)n Simple_repeat Simple_repeat 1 28 0 28 0 0 0 chr15 49544952 49544980 -51835541 + AT_rich Low_complexity Low_complexity 1 28 0 301 277 0 12 chr15 49545014 49545097 -51835424 - L1ME LINE L1 -513 5608 5527 224 130 19 37 chr15 49545104 49545158 -51835363 + T-rich Low_complexity Low_complexity 2 54 0 204 225 0 0 chr15 49546321 49546361 -51834160 + A-rich Low_complexity Low_complexity 2 41 0 435 78 0 0 chr15 49547968 49548032 -51832489 + (TTCA)n Simple_repeat Simple_repeat 2 65 0 362 309 34 68 chr15 49548210 49548417 -51832104 + MIR3 SINE MIR 1 200 -8 1087 147 0 0 chr15 49548727 49548890 -51831631 + FRAM SINE Alu 4 166 0 216 351 9 45 chr15 49548953 49549064 -51831457 - L2 LINE L2 -6 3266 3160 248 306 71 12 chr15 49550102 49550284 -51830237 + MIR SINE MIR 44 262 0 5484 172 29 35 chr15 49550319 49550500 -51830021 + L1MA10 LINE L1 4208 4389 -1945 1787 155 36 26 chr15 49550500 49550809 -51829712 + AluJb SINE Alu 1 312 0 5484 172 29 35 chr15 49550809 49552738 -51827783 + L1MA10 LINE L1 4389 6323 -11 1397 189 10 50 chr15 49554184 49554485 -51826036 - AluJb SINE Alu -23 289 1 195 363 159 5 chr15 49554681 49554882 -51825639 + L2 LINE L2 2572 2803 -511 260 203 13 38 chr15 49555385 49555464 -51825057 - L1ME4a LINE L1 -103 6018 5942 239 194 30 0 chr15 49555602 49555669 -51824852 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 5371 232 49 15 chr15 49555769 49558726 -51821795 - L1MB2 LINE L1 -19 6152 3067 355 359 38 23 chr15 49559262 49559393 -51821128 - L2 LINE L2 -18 3254 3122 21713 137 13 5 chr15 49559496 49564280 -51816241 + L1PA10 LINE L1 1998 6831 0 262 198 121 33 chr15 49564489 49564580 -51815941 - L2 LINE L2 -262 3010 2912 188 313 48 72 chr15 49564782 49564865 -51815656 - L2 LINE L2 0 3272 3192 331 287 14 63 chr15 49564943 49565086 -51815435 - L2 LINE L2 -253 3060 2925 494 265 55 31 chr15 49566217 49566447 -51814074 + MIR SINE MIR 16 248 -14 685 310 27 19 chr15 49568525 49568783 -51811738 + MIR SINE MIR 3 262 0 288 257 143 9 chr15 49569192 49569297 -51811224 - MER5A DNA MER1_type -70 119 1 294 223 205 27 chr15 49569308 49569420 -51811101 + MIR SINE MIR 21 152 -110 421 107 0 27 chr15 49570065 49570140 -51810381 - L1PA11 LINE L1 -1 6173 6101 2571 57 0 0 chr15 49570151 49570447 -51810074 - AluY SINE Alu -15 296 1 23 54 0 0 chr15 49570872 49570909 -51809612 + AT_rich Low_complexity Low_complexity 1 37 0 477 170 95 82 chr15 49570937 49571084 -51809437 - MLT1C LTR MaLR -314 153 5 7601 25 2 0 chr15 49571506 49572762 -51807759 + L1PA4 LINE L1 4895 6152 -3 1551 211 102 20 chr15 49573265 49573447 -51807074 + MLT1D LTR MaLR 1 167 -338 342 0 0 0 chr15 49573447 49573485 -51807036 + (CA)n Simple_repeat Simple_repeat 2 39 0 1551 211 102 20 chr15 49573485 49573762 -51806759 + MLT1D LTR MaLR 167 498 -7 674 196 31 141 chr15 49574141 49574467 -51806054 - MLT2B1 LTR ERVL -186 334 45 780 250 32 23 chr15 49574753 49574969 -51805552 - MIR SINE MIR -12 250 33 839 281 56 0 chr15 49575650 49575917 -51804604 + LTR16A LTR ERVL 169 450 0 565 314 122 37 chr15 49575928 49576501 -51804020 - HAL1 LINE L1 -1881 626 5 24 32 0 0 chr15 49580115 49580146 -51800375 + AT_rich Low_complexity Low_complexity 1 31 0 441 298 39 120 chr15 49581063 49581472 -51799049 - L2 LINE L2 0 3272 2897 347 83 0 0 chr15 49582410 49582458 -51798063 + MLT1A1 LTR MaLR 103 150 -215 899 123 0 0 chr15 49582466 49582588 -51797933 + FLAM_C SINE Alu 3 124 -9 405 311 197 6 chr15 49582745 49582928 -51797593 + MIR SINE MIR 42 259 -3 216 67 0 0 chr15 49584303 49584333 -51796188 + (TG)n Simple_repeat Simple_repeat 2 31 0 195 341 98 0 chr15 49585173 49585305 -51795216 + L2 LINE L2 2837 2981 -291 335 320 85 0 chr15 49586702 49586855 -51793666 + MIR3 SINE MIR 33 198 -10 268 346 131 0 chr15 49587119 49587226 -51793295 - L2 LINE L2 -56 3216 3096 247 260 19 15 chr15 49587316 49587421 -51793100 - MIR SINE MIR -71 137 33 630 242 27 7 chr15 49589317 49589466 -51791055 - MIR3 SINE MIR -3 205 54 306 277 71 27 chr15 49589882 49589994 -51790527 + L2 LINE L2 3149 3265 -7 612 227 162 13 chr15 49590032 49590186 -51790335 + MER5A DNA MER1_type 6 182 -7 2125 142 7 0 chr15 49590334 49590644 -51789877 + AluSx SINE Alu 1 312 0 216 0 0 0 chr15 49592192 49592216 -51788305 + (TTA)n Simple_repeat Simple_repeat 2 25 0 384 309 209 0 chr15 49593165 49593366 -51787155 - MIR SINE MIR -5 257 15 9164 219 16 9 chr15 49593505 49593839 -51786682 - L1PA16 LINE L1 -10 6156 5826 2030 131 7 0 chr15 49593839 49594129 -51786392 - AluSx SINE Alu -20 292 1 9164 219 16 9 chr15 49594129 49596932 -51783589 - L1PA16 LINE L1 -340 5826 3031 494 157 10 0 chr15 49596952 49597054 -51783467 + CT-rich Low_complexity Low_complexity 3 105 0 1884 190 0 6 chr15 49597056 49597367 -51783154 - AluSx SINE Alu -3 309 1 3124 249 20 60 chr15 49597371 49598365 -51782156 - L1PA16 LINE L1 -3113 3033 2042 330 113 0 0 chr15 49598365 49598418 -51782103 + Alu SINE Alu 245 297 -5 3124 249 20 60 chr15 49598418 49598594 -51781927 - L1PA16 LINE L1 -4104 2042 1860 708 20 0 30 chr15 49598697 49598798 -51781723 + (TTC)n Simple_repeat Simple_repeat 3 100 0 591 281 55 5 chr15 49598943 49599142 -51781379 + MER3 DNA MER1_type 1 209 0 2774 189 57 37 chr15 49599568 49600680 -51779841 + L1M4 LINE L1 4627 5755 -429 762 237 65 0 chr15 49600758 49600944 -51779577 + MIR SINE MIR 58 255 -7 391 314 83 7 chr15 49600974 49601160 -51779361 + MIR3 SINE MIR 8 206 -2 1412 131 0 0 chr15 49601219 49601410 -51779111 + AluSq SINE Alu 24 214 -99 22 35 0 0 chr15 49601776 49601805 -51778716 + AT_rich Low_complexity Low_complexity 1 29 0 6469 145 21 20 chr15 49602919 49603738 -51776783 - L1MA8 LINE L1 0 6291 5475 1853 157 14 7 chr15 49603738 49604025 -51776496 - AluJo SINE Alu -23 289 1 6469 145 21 20 chr15 49604025 49604135 -51776386 - L1MA8 LINE L1 -816 5475 5367 6040 120 74 62 chr15 49604135 49604925 -51775596 + Tigger3b DNA MER2_type 2 812 -2216 1714 152 6 76 chr15 49604925 49605254 -51775267 + AluSx SINE Alu 5 310 -2 6040 120 74 62 chr15 49605254 49605679 -51774842 + Tigger3b DNA MER2_type 812 1231 0 6469 145 21 20 chr15 49605679 49606982 -51773539 - L1MA8 LINE L1 -924 5367 4045 404 229 0 21 chr15 49607076 49607172 -51773349 - MLT2E LTR ERVL -519 109 16 200 274 0 48 chr15 49607520 49607582 -51772939 + L2 LINE L2 3242 3300 -13 730 165 135 0 chr15 49607585 49607718 -51772803 + FAM SINE Alu 18 168 -17 184 276 10 102 chr15 49608809 49608907 -51771614 - L3 LINE CR1 -590 987 899 628 321 210 32 chr15 49609416 49610036 -51770485 - L3 LINE CR1 -419 1158 429 1868 198 61 2 chr15 49610048 49610473 -51770048 + L1ME2 LINE L1 5609 6058 -106 1130 244 55 37 chr15 49610494 49610876 -51769645 + MLT1B LTR MaLR 2 390 0 307 291 39 47 chr15 49610926 49611053 -51769468 - L1ME2 LINE L1 -132 6032 5907 271 257 80 18 chr15 49611054 49611167 -51769354 + MIR SINE MIR 137 256 -6 2015 134 0 0 chr15 49612279 49612563 -51767958 + AluSq SINE Alu 1 284 -29 293 82 20 0 chr15 49612566 49612615 -51767906 + (CAA)n Simple_repeat Simple_repeat 2 51 0 279 0 0 0 chr15 49613044 49613075 -51767446 + (T)n Simple_repeat Simple_repeat 1 31 0 22 0 0 0 chr15 49613516 49613538 -51766983 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr15 49613802 49613831 -51766690 + AT_rich Low_complexity Low_complexity 1 29 0 480 77 0 0 chr15 49613831 49613896 -51766625 + (TG)n Simple_repeat Simple_repeat 2 66 0 278 304 88 64 chr15 49614014 49614139 -51766382 + MER5A DNA MER1_type 59 186 -3 495 267 176 11 chr15 49614696 49614883 -51765638 + MIR SINE MIR 12 229 -33 1857 123 68 41 chr15 49618860 49619225 -51761296 + THE1C LTR MaLR 1 375 0 531 239 67 81 chr15 49619397 49619606 -51760915 - MIR SINE MIR -10 252 47 365 261 314 11 chr15 49620934 49621122 -51759399 + MIR SINE MIR 13 257 -5 340 250 0 46 chr15 49621459 49621567 -51758954 - MER103 DNA DNA -54 112 10 1594 187 16 29 chr15 49621673 49621989 -51758532 + AluJb SINE Alu 1 312 0 216 0 0 0 chr15 49622018 49622042 -51758479 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 299 364 65 26 chr15 49623670 49623824 -51756697 - L2 LINE L2 -16 3256 3097 374 265 28 81 chr15 49624045 49624256 -51756265 - LTR67 LTR ERVL -2 555 356 1104 202 206 0 chr15 49624682 49624964 -51755557 + MSTD LTR MaLR 5 344 -52 191 167 0 21 chr15 49625343 49625391 -51755130 + CT-rich Low_complexity Low_complexity 2 48 0 979 128 0 27 chr15 49625414 49625739 -51754782 + (TTTC)n Simple_repeat Simple_repeat 1 496 -44 243 0 0 0 chr15 49625739 49625766 -51754755 + (CCTG)n Simple_repeat Simple_repeat 4 30 0 979 128 0 27 chr15 49625766 49625810 -51754711 + (TTTC)n Simple_repeat Simple_repeat 496 540 0 1489 11 0 11 chr15 49625810 49625991 -51754530 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 627 14 0 0 chr15 49625991 49626063 -51754458 + (TTTC)n Simple_repeat Simple_repeat 1 72 0 997 174 18 59 chr15 49626123 49626342 -51754179 + MER20 DNA MER1_type 7 216 -3 320 155 0 0 chr15 49626561 49626619 -51753902 - MER81 DNA DNA 0 114 57 22 70 0 0 chr15 49628027 49628070 -51752451 + AT_rich Low_complexity Low_complexity 1 43 0 290 275 7 94 chr15 49629495 49629633 -51750888 + L2 LINE L2 2921 3046 -226 243 316 11 53 chr15 49632359 49632454 -51748067 - MER5A DNA MER1_type 0 189 99 213 288 89 41 chr15 49632696 49632842 -51747679 - L3b LINE CR1 -9 1574 1422 1033 252 22 14 chr15 49633130 49633408 -51747113 - L3b LINE CR1 -200 1383 1104 842 252 93 5 chr15 49633493 49633707 -51746814 + MIR SINE MIR 1 233 -29 285 349 9 11 chr15 49633889 49634017 -51746504 + MIR SINE MIR 27 151 -66 504 330 63 17 chr15 49634275 49634514 -51746007 + MIR SINE MIR 1 250 -12 366 236 87 72 chr15 49635076 49635284 -51745237 - L1ME4a LINE L1 -11 6110 5900 189 196 0 0 chr15 49635300 49635346 -51745175 + (TA)n Simple_repeat Simple_repeat 1 46 0 256 285 76 6 chr15 49635415 49635573 -51744948 - L1ME4a LINE L1 -313 5808 5640 186 43 0 0 chr15 49636546 49636569 -51743952 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 351 262 63 40 chr15 49638908 49639034 -51741487 + MIR SINE MIR 86 214 -48 739 236 144 31 chr15 49639085 49639314 -51741207 - MIR SINE MIR -3 259 5 359 303 61 57 chr15 49640346 49640574 -51739947 - MIR SINE MIR 0 262 34 279 303 112 3 chr15 49640816 49641005 -51739516 + MIR SINE MIR 3 262 0 198 372 0 26 chr15 49641171 49641249 -51739272 - MIR SINE MIR -116 92 17 371 275 191 6 chr15 49641296 49641474 -51739047 - MIR SINE MIR 0 262 52 385 333 80 22 chr15 49642492 49642768 -51737753 + L3 LINE CR1 1179 1470 -107 240 35 0 0 chr15 49642770 49642799 -51737722 + (GA)n Simple_repeat Simple_repeat 2 30 0 40745 35 21 1 chr15 49643917 49649949 -51730572 - L1PA2 LINE L1 -1 6154 1 1936 133 66 36 chr15 49650029 49650391 -51730130 + THE1C LTR MaLR 3 375 0 217 246 46 15 chr15 49651708 49651773 -51728748 - L2 LINE L2 0 3313 3247 8292 111 9 31 chr15 49651813 49652791 -51727730 - HSMAR1 DNA Mariner -9 1278 335 2046 131 3 3 chr15 49652791 49653089 -51727432 + AluSx SINE Alu 1 298 -14 8292 111 9 31 chr15 49653089 49653416 -51727105 - HSMAR1 DNA Mariner -952 335 2 194 356 130 32 chr15 49653541 49653788 -51726733 - L2 LINE L2 -190 3082 2812 258 266 16 16 chr15 49654065 49654129 -51726392 + L2 LINE L2 3246 3309 -4 890 252 57 0 chr15 49654404 49654614 -51725907 - MIR SINE MIR 0 262 41 231 366 48 43 chr15 49655310 49655496 -51725025 + L3 LINE CR1 1249 1435 -142 304 308 0 0 chr15 49655583 49655661 -51724860 - MIR SINE MIR -183 79 2 1986 259 292 5 chr15 49655997 49657123 -51723398 - L2 LINE L2 -1 3312 1838 207 327 0 0 chr15 49657213 49657265 -51723256 - L2 LINE L2 -12 3301 3250 768 275 64 21 chr15 49657835 49658068 -51722453 - MIR SINE MIR -17 245 3 2077 186 7 24 chr15 49658156 49658551 -51721970 + Tigger1 DNA MER2_type 1 390 -2028 2574 207 14 53 chr15 49658551 49659188 -51721333 + LTR9 LTR ERV1 1 612 0 2077 186 7 24 chr15 49659188 49659211 -51721310 + Tigger1 DNA MER2_type 390 412 -2006 485 306 126 0 chr15 49659272 49659527 -51720994 - L1ME LINE L1 -363 5758 5472 11050 128 59 10 chr15 49659621 49661060 -51719461 + Tigger1 DNA MER2_type 398 1956 -462 7463 32 4 3 chr15 49661060 49662048 -51718473 + L1PA4 LINE L1 5167 6155 0 11050 128 59 10 chr15 49662048 49662527 -51717994 + Tigger1 DNA MER2_type 1956 2410 -8 265 275 11 55 chr15 49662572 49662663 -51717858 - MIR SINE MIR -151 111 25 321 311 51 45 chr15 49662767 49662944 -51717577 + MIR SINE MIR 26 203 -59 269 260 0 3 chr15 49663706 49663773 -51716748 + MIR SINE MIR 78 141 -67 332 281 88 0 chr15 49663786 49663900 -51716621 - MIR SINE MIR -2 260 137 7658 11 0 0 chr15 49664323 49665674 -51714847 - L1HS LINE L1 0 6155 4805 532 283 33 28 chr15 49665893 49666073 -51714448 - MIR SINE MIR 0 262 82 426 229 0 0 chr15 49666758 49666880 -51713641 + GA-rich Low_complexity Low_complexity 3 124 0 404 228 61 18 chr15 49666895 49667009 -51713512 - MIR SINE MIR -52 210 92 237 313 0 0 chr15 49667076 49667143 -51713378 + L2 LINE L2 3246 3312 -1 408 289 146 39 chr15 49667276 49667632 -51712889 + MLT1J2 LTR MaLR 55 448 -2 2037 148 48 0 chr15 49669257 49669588 -51710933 + MER7A DNA MER2_type 1 345 -1 657 271 5 21 chr15 49670844 49671032 -51709489 - MIR SINE MIR 0 262 78 209 325 0 25 chr15 49671074 49671154 -51709367 + CT-rich Low_complexity Low_complexity 2 79 0 181 309 0 15 chr15 49671154 49671222 -51709299 - L2 LINE L2 -20 3252 3186 266 321 30 15 chr15 49672065 49672236 -51708285 - MIR SINE MIR -38 224 52 253 372 146 0 chr15 49672377 49672576 -51707945 - L2 LINE L2 -537 2777 2550 420 321 0 0 chr15 49672986 49673092 -51707429 + L2 LINE L2 3208 3313 0 28 29 0 0 chr15 49674048 49674083 -51706438 + AT_rich Low_complexity Low_complexity 1 35 0 213 205 0 0 chr15 49674110 49674149 -51706372 + A-rich Low_complexity Low_complexity 5 43 0 320 276 222 11 chr15 49674455 49674640 -51705881 - MIR SINE MIR -19 243 20 957 39 77 23 chr15 49676028 49676158 -51704363 + MER85 DNA T2_type 1 137 -2 264 250 135 0 chr15 49677038 49677142 -51703379 - L1M3 LINE L1 -673 5498 5381 400 297 126 48 chr15 49677379 49679615 -51700906 - L1M3 LINE L1 -1088 5058 2998 2421 92 0 3 chr15 49679615 49679929 -51700592 - AluSq SINE Alu 0 313 1 400 297 126 48 chr15 49679929 49680096 -51700425 - L1M3 LINE L1 -3148 2998 2845 2037 167 0 34 chr15 49680096 49680474 -51700047 + MLT1A1 LTR MaLR 1 365 0 400 297 126 48 chr15 49680474 49680701 -51699820 - L1M3 LINE L1 -3301 2845 2221 22 0 0 0 chr15 49681571 49681593 -51698928 + AT_rich Low_complexity Low_complexity 1 22 0 272 259 224 12 chr15 49681638 49681723 -51698798 + MIR3 SINE MIR 15 117 -91 346 211 126 0 chr15 49681810 49681905 -51698616 - MER103 DNA DNA -57 109 3 492 297 141 7 chr15 49683326 49683616 -51696905 - LTR16A LTR ERVL -3 447 119 317 261 40 102 chr15 49683688 49683864 -51696657 + MIR SINE MIR 97 261 -1 292 267 44 11 chr15 49685075 49685165 -51695356 - MIR SINE MIR -86 176 84 537 358 58 9 chr15 49685264 49685490 -51695031 - MIR SINE MIR -10 252 16 240 299 13 0 chr15 49685575 49685652 -51694869 + MLT1L LTR MaLR 122 199 -416 200 176 0 0 chr15 49686597 49686631 -51693890 + GA-rich Low_complexity Low_complexity 1 34 0 2261 181 50 37 chr15 49686689 49687263 -51693258 - L1MD3 LINE L1 -10 7985 7404 611 202 8 0 chr15 49687263 49687387 -51693134 - MLT1F1 LTR MaLR -442 125 1 244 73 109 36 chr15 49687388 49687443 -51693078 - L1MD3 LINE L1 -718 7277 7219 498 258 116 5 chr15 49687500 49687690 -51692831 + LTR33 LTR ERVL 1 211 -310 3937 117 15 28 chr15 49687742 49688559 -51691962 + L1PA13 LINE L1 4883 5832 -331 2169 125 7 0 chr15 49688559 49688856 -51691665 + AluSx SINE Alu 1 299 -13 3937 117 15 28 chr15 49688856 49689182 -51691339 + L1PA13 LINE L1 5832 6161 -2 378 203 80 68 chr15 49689241 49689404 -51691117 + LTR33 LTR ERVL 357 521 0 22 0 0 0 chr15 49689441 49689463 -51691058 + AT_rich Low_complexity Low_complexity 1 22 0 40 0 0 0 chr15 49689574 49689614 -51690907 + AT_rich Low_complexity Low_complexity 1 40 0 1023 134 0 5 chr15 49689616 49689802 -51690719 - L1MA8 LINE L1 -6 6285 6101 2235 125 0 0 chr15 49689812 49690117 -51690404 - AluSx SINE Alu -7 305 1 359 355 0 0 chr15 49690213 49690323 -51690198 - MIR SINE MIR -113 149 40 244 282 10 19 chr15 49690622 49690725 -51689796 - MER103 DNA DNA -52 114 13 21 36 0 0 chr15 49690787 49690815 -51689706 + AT_rich Low_complexity Low_complexity 1 28 0 359 118 0 0 chr15 49691483 49691534 -51688987 + THE1B LTR MaLR 314 364 0 365 195 23 0 chr15 49691543 49691630 -51688891 + MER20 DNA MER1_type 130 218 -1 38607 53 30 1 chr15 49691724 49697673 -51682848 + L1PA5 LINE L1 11 6139 -15 264 30 0 0 chr15 49697673 49697706 -51682815 + (TA)n Simple_repeat Simple_repeat 2 34 0 210 143 0 0 chr15 49698533 49698568 -51681953 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 231 381 30 30 chr15 49699897 49700031 -51680490 + MIR3 SINE MIR 7 140 -68 2391 109 0 0 chr15 49700446 49700758 -51679763 + AluSx SINE Alu 1 312 0 1262 216 111 33 chr15 49700996 49701210 -51679311 - MSTD LTR MaLR -6 390 135 2442 57 3 0 chr15 49701210 49701507 -51679014 - AluY SINE Alu -13 298 1 1262 216 111 33 chr15 49701507 49701654 -51678867 - MSTD LTR MaLR -261 135 1 21 82 0 0 chr15 49702014 49702063 -51678458 + AT_rich Low_complexity Low_complexity 1 49 0 438 20 0 0 chr15 49703280 49703331 -51677190 + (CA)n Simple_repeat Simple_repeat 2 52 0 24 0 0 0 chr15 49705795 49705819 -51674702 + AT_rich Low_complexity Low_complexity 1 24 0 418 342 13 20 chr15 49706452 49706601 -51673920 + MIR3 SINE MIR 19 166 -42 1956 116 53 0 chr15 49709142 49709427 -51671094 + AluSx SINE Alu 1 300 -12 200 339 31 32 chr15 49709567 49709718 -51670803 - MIR SINE MIR -18 190 37 625 251 39 17 chr15 49710518 49710697 -51669824 + MIR SINE MIR 66 248 -14 185 180 20 0 chr15 49710816 49710866 -51669655 + GA-rich Low_complexity Low_complexity 2 52 0 198 278 69 28 chr15 49712520 49712592 -51667929 - L2 LINE L2 -50 3222 3148 195 129 0 0 chr15 49712894 49712925 -51667596 + L2 LINE L2 3276 3306 -7 344 260 159 18 chr15 49713573 49713750 -51666771 + MIR SINE MIR 34 225 -37 201 119 51 34 chr15 49713924 49713945 -51666576 + T-rich Low_complexity Low_complexity 6 25 -40 3572 75 9 45 chr15 49713945 49714481 -51666040 - L1PA8 LINE L1 -8 6164 5648 201 119 51 34 chr15 49714481 49714518 -51666003 + T-rich Low_complexity Low_complexity 25 65 0 272 226 157 0 chr15 49714523 49714625 -51665896 + MLT1C LTR MaLR 1 118 -349 1703 207 66 5 chr15 49714650 49715075 -51665446 - MLT1C LTR MaLR 0 467 17 949 67 28 28 chr15 49718501 49718681 -51661840 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 311 285 80 46 chr15 49720117 49720268 -51660253 + MIR3 SINE MIR 36 191 -17 737 268 16 5 chr15 49720375 49720565 -51659956 - MIR SINE MIR -42 220 29 217 246 18 18 chr15 49720614 49720671 -51659850 + (CA)n Simple_repeat Simple_repeat 2 58 0 370 264 86 22 chr15 49722391 49722517 -51658004 + L1M4 LINE L1 4883 5000 -1194 288 53 0 0 chr15 49722517 49722555 -51657966 + (CA)n Simple_repeat Simple_repeat 1 38 0 370 264 86 22 chr15 49722555 49722933 -51657588 + L1M4 LINE L1 5000 5426 -768 188 186 17 0 chr15 49723007 49723066 -51657455 + (TA)n Simple_repeat Simple_repeat 1 60 0 419 228 60 11 chr15 49723069 49723214 -51657307 - L1MC4 LINE L1 -232 7763 7521 771 256 82 41 chr15 49723237 49723651 -51656870 - L1MC4a LINE L1 -1736 6072 5642 330 242 63 0 chr15 49725178 49725273 -51655248 + MIR SINE MIR 119 219 -43 426 286 31 52 chr15 49726282 49726474 -51654047 + MIR SINE MIR 8 195 -67 758 261 33 53 chr15 49726532 49726835 -51653686 - LTR16A1 LTR ERVL -3 454 158 546 309 68 62 chr15 49726965 49727334 -51653187 - L2 LINE L2 -64 3208 2838 216 218 0 36 chr15 49727497 49727552 -51652969 + (CTA)n Simple_repeat Simple_repeat 1 53 0 198 329 47 35 chr15 49727577 49727662 -51652859 + L2 LINE L2 3111 3196 -76 319 240 154 10 chr15 49727822 49727926 -51652595 - L2 LINE L2 -4 3268 3150 939 275 36 7 chr15 49727931 49728240 -51652281 + MER20B DNA MER1_type 4 321 -462 2596 184 19 4 chr15 49728306 49728833 -51651688 - L1MB2 LINE L1 -42 6129 5595 1296 227 42 26 chr15 49728862 49729290 -51651231 + MER20B DNA MER1_type 340 774 -9 2556 57 0 0 chr15 49729448 49729749 -51650772 + AluY SINE Alu 1 301 -10 1619 207 25 15 chr15 49729915 49730320 -51650201 + MER20B DNA MER1_type 373 781 -2 950 253 37 30 chr15 49730717 49731013 -51649508 - L2 LINE L2 0 3313 3016 2082 104 38 0 chr15 49731289 49731577 -51648944 + AluSx SINE Alu 1 299 -13 294 320 47 31 chr15 49732151 49732279 -51648242 + MIR SINE MIR 22 151 -111 190 288 75 38 chr15 49732346 49732426 -51648095 + L2 LINE L2 3182 3264 -8 225 0 0 0 chr15 49732838 49732863 -51647658 + (TG)n Simple_repeat Simple_repeat 2 26 0 250 239 15 15 chr15 49733231 49733298 -51647223 + (TA)n Simple_repeat Simple_repeat 2 68 0 2878 3 0 0 chr15 49733584 49733895 -51646626 + AluY SINE Alu 1 311 0 194 0 39 0 chr15 49735044 49735070 -51645451 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 326 296 70 0 chr15 49735221 49735336 -51645185 + MIR SINE MIR 90 212 -50 230 268 42 0 chr15 49735803 49735874 -51644647 - L2 LINE L2 -193 3079 3006 351 262 63 40 chr15 49737834 49737960 -51642561 + MIR SINE MIR 86 214 -48 739 236 144 31 chr15 49738011 49738240 -51642281 - MIR SINE MIR -3 259 5 359 303 61 57 chr15 49739272 49739500 -51641021 - MIR SINE MIR 0 262 34 279 303 112 3 chr15 49739742 49739931 -51640590 + MIR SINE MIR 3 262 0 198 372 0 26 chr15 49740097 49740175 -51640346 - MIR SINE MIR -116 92 17 371 275 191 6 chr15 49740222 49740400 -51640121 - MIR SINE MIR 0 262 52 384 336 54 36 chr15 49741414 49741694 -51638827 + L3 LINE CR1 1186 1470 -107 240 35 0 0 chr15 49741696 49741725 -51638796 + (GA)n Simple_repeat Simple_repeat 2 30 0 39615 43 27 0 chr15 49742844 49748823 -51631698 - L1PA2 LINE L1 0 6155 11 365 195 23 0 chr15 49748917 49749004 -51631517 - MER20 DNA MER1_type -1 218 130 359 118 0 0 chr15 49749013 49749064 -51631457 - THE1B LTR MaLR 0 364 314 21 36 0 0 chr15 49749732 49749760 -51630761 + AT_rich Low_complexity Low_complexity 1 28 0 2922 210 112 38 chr15 49750206 49751196 -51629325 + Charlie1 DNA MER1_type 14 1076 -1685 1078 257 83 6 chr15 49751238 49751577 -51628944 + Charlie1 DNA MER1_type 1228 1592 -1169 2481 74 0 3 chr15 49752316 49752628 -51627893 + AluY SINE Alu 1 311 0 1186 199 9 38 chr15 49752628 49752945 -51627576 + Charlie1 DNA MER1_type 1583 1890 -871 304 218 55 55 chr15 49753524 49753634 -51626887 + L1M4 LINE L1 3084 3193 -2953 254 364 0 0 chr15 49753690 49753866 -51626655 + A-rich Low_complexity Low_complexity 1 176 0 304 209 114 85 chr15 49753880 49754081 -51626440 + L1M4 LINE L1 3074 3280 -2866 604 175 79 8 chr15 49754108 49754234 -51626287 + Charlie1 DNA MER1_type 1923 2057 -704 272 279 108 0 chr15 49754249 49754299 -51626222 - L1ME1 LINE L1 -22 6144 6101 198 0 0 0 chr15 49754299 49754321 -51626200 + (TA)n Simple_repeat Simple_repeat 1 22 0 272 279 108 0 chr15 49754321 49754381 -51626140 - L1ME1 LINE L1 -65 6101 6022 27 0 0 0 chr15 49754383 49754410 -51626111 + AT_rich Low_complexity Low_complexity 1 27 0 2104 174 12 2 chr15 49754418 49754820 -51625701 + L1MA7 LINE L1 5458 5863 -428 612 251 18 6 chr15 49754820 49754983 -51625538 - L1ME1 LINE L1 -148 6018 5854 2421 193 98 12 chr15 49754986 49755648 -51624873 + Charlie1 DNA MER1_type 2043 2761 0 321 26 0 0 chr15 49757515 49757553 -51622968 + (TG)n Simple_repeat Simple_repeat 2 39 0 645 230 19 8 chr15 49758084 49758292 -51622229 - L1MC3 LINE L1 -1 7784 6117 303 325 157 15 chr15 49758769 49759043 -51621478 + HAL1 LINE L1 878 1190 -1317 294 331 6 18 chr15 49759046 49759225 -51621296 + L1PA15 LINE L1 5935 6111 -50 207 204 45 0 chr15 49759830 49759874 -51620647 + L3 LINE CR1 1275 1320 -257 645 291 87 30 chr15 49760090 49760389 -51620132 - L2 LINE L2 -1 3312 2997 22 0 0 0 chr15 49760716 49760738 -51619783 + AT_rich Low_complexity Low_complexity 1 22 0 588 294 66 5 chr15 49761536 49761747 -51618774 - MIR SINE MIR -6 256 33 2190 194 71 12 chr15 49762730 49762772 -51617749 - MLT2B1 LTR ERVL 0 520 482 456 35 0 0 chr15 49762772 49762830 -51617691 + (CA)n Simple_repeat Simple_repeat 2 59 0 2190 194 71 12 chr15 49762830 49763278 -51617243 - MLT2B1 LTR ERVL -38 482 1 267 259 25 12 chr15 49763289 49763370 -51617151 + HsTC2 DNA Tc2 1311 1392 -506 235 268 12 12 chr15 49764910 49764992 -51615529 + (TA)n Simple_repeat Simple_repeat 2 83 0 2429 84 0 3 chr15 49765607 49765916 -51614605 + AluY SINE Alu 1 308 -3 5154 132 13 50 chr15 49766475 49767416 -51613105 - L1MC1 LINE L1 0 6333 5428 2180 138 28 25 chr15 49767788 49768151 -51612370 + THE1B LTR MaLR 1 364 0 333 0 0 0 chr15 49768288 49768325 -51612196 + (CA)n Simple_repeat Simple_repeat 1 37 0 328 278 63 31 chr15 49768342 49768509 -51612012 + MIR SINE MIR 36 206 -56 346 326 16 49 chr15 49768515 49768699 -51611822 + MER5B DNA MER1_type 1 178 0 2466 68 0 13 chr15 49770559 49770869 -51609652 - AluY SINE Alu -5 306 1 30 0 0 0 chr15 49771282 49771312 -51609209 + AT_rich Low_complexity Low_complexity 1 30 0 240 354 0 0 chr15 49771370 49771449 -51609072 - MER91 DNA MER1_type -62 128 50 421 313 27 38 chr15 49771558 49771743 -51608778 + MIR SINE MIR 38 218 -44 1985 135 0 26 chr15 49771815 49772119 -51608402 + AluSx SINE Alu 1 296 -16 189 0 0 0 chr15 49772119 49772140 -51608381 + (TA)n Simple_repeat Simple_repeat 1 21 0 2239 115 0 7 chr15 49772168 49772472 -51608049 + AluSq SINE Alu 1 302 -11 340 333 80 6 chr15 49773302 49773464 -51607057 + MIR SINE MIR 77 250 -12 396 323 0 8 chr15 49773479 49773603 -51606918 + MIR SINE MIR 20 142 -66 191 382 13 13 chr15 49775134 49775210 -51605311 - L2 LINE L2 -96 3176 3101 228 61 20 41 chr15 49776021 49776070 -51604451 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 747 264 6 0 chr15 49776499 49776673 -51603848 + MER45A DNA AcHobo 3 177 -1 705 318 29 16 chr15 49777338 49777583 -51602938 + MIR SINE MIR 14 261 -1 405 0 0 0 chr15 49777596 49777641 -51602880 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 449 244 57 88 chr15 49778485 49778678 -51601843 + MIR SINE MIR 76 262 0 333 289 101 19 chr15 49778943 49779102 -51601419 + MIR SINE MIR 36 207 -55 306 313 102 17 chr15 49779102 49779278 -51601243 - MIR SINE MIR -22 240 50 226 314 59 0 chr15 49780626 49780728 -51599793 - MER96 DNA MER1_type? 0 175 68 375 345 68 29 chr15 49781231 49781437 -51599084 + MIR SINE MIR 46 259 -3 388 231 29 0 chr15 49784766 49784870 -51595651 - MER103 DNA DNA -57 109 3 653 301 69 0 chr15 49785221 49785437 -51595084 - MIR SINE MIR -30 232 2 515 345 46 6 chr15 49785736 49785910 -51594611 + MIR3 SINE MIR 3 183 -25 2059 252 89 41 chr15 49786063 49786797 -51593724 - MER21B LTR ERV1 -51 812 44 273 294 98 33 chr15 49787016 49787108 -51593413 + L2 LINE L2 3144 3241 -31 1291 269 158 8 chr15 49788807 49789461 -51591060 + L2 LINE L2 2559 3313 0 1937 163 31 0 chr15 49789498 49789853 -51590668 + MER47A DNA MER2_type 1 366 0 2564 160 5 5 chr15 49789853 49790297 -51590224 - MLT1C LTR MaLR -2 465 22 1980 161 3 176 chr15 49790296 49790910 -51589611 - MLT2B3 LTR ERVL -7 508 1 * 225 215 46 62 chr15 49791697 49791762 -51588759 + L2 LINE L2 3249 3312 -1 3149 262 93 27 chr15 49792098 49792266 -51588255 - L1MCc LINE L1 -4080 3042 2886 189 0 0 0 chr15 49792266 49792287 -51588234 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 3149 262 93 27 chr15 49792287 49793623 -51586898 - L1MCc LINE L1 -4236 2886 1639 231 36 0 0 chr15 49793623 49793651 -51586870 + (TG)n Simple_repeat Simple_repeat 2 29 0 3149 262 93 27 chr15 49793651 49794788 -51585733 - L1MCc LINE L1 -5483 1639 17 231 269 19 0 chr15 49794854 49794906 -51585615 - MIR SINE MIR -133 75 23 571 166 18 24 chr15 49796995 49797164 -51583357 + CT-rich Low_complexity Low_complexity 3 170 0 24 0 0 0 chr15 49797610 49797634 -51582887 + AT_rich Low_complexity Low_complexity 1 24 0 16736 149 6 12 chr15 49798007 49798151 -51582370 + L1PA11 LINE L1 2264 2407 -3754 2106 112 0 14 chr15 49798151 49798467 -51582054 + AluSq SINE Alu 1 312 0 16736 149 6 12 chr15 49798467 49801555 -51578966 + L1PA11 LINE L1 2407 5476 -685 3859 68 2 2 chr15 49801555 49802055 -51578466 - L1PA8 LINE L1 -11 6161 5662 4930 92 11 11 chr15 49802172 49802886 -51577635 + L1PA11 LINE L1 5460 6173 -1 367 235 0 12 chr15 49802895 49802980 -51577541 - MER96B DNA MER1_type? -332 85 2 1547 173 111 4 chr15 49803116 49803387 -51577134 - AluSx SINE Alu -11 301 2 370 311 47 42 chr15 49803476 49803666 -51576855 - MIR SINE MIR -51 211 21 235 263 84 24 chr15 49803670 49803921 -51576600 + L1ME LINE L1 5068 5333 -813 598 295 47 7 chr15 49803924 49804236 -51576285 + L1ME LINE L1 5374 5696 -474 203 250 0 0 chr15 49804236 49804276 -51576245 + (CA)n Simple_repeat Simple_repeat 1 40 0 885 220 26 0 chr15 49804740 49804931 -51575590 + MLT1D LTR MaLR 304 499 -6 558 241 64 99 chr15 49804953 49805550 -51574971 + L1MEd LINE L1 682 1257 -4862 335 227 45 64 chr15 49805724 49805834 -51574687 + L1MEd LINE L1 1373 1480 -4651 215 220 33 88 chr15 49806854 49806945 -51573576 + MIR SINE MIR 126 211 -51 185 0 0 39 chr15 49806995 49807021 -51573500 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1953 114 93 0 chr15 49807443 49807723 -51572798 - AluSg SINE Alu -4 306 1 1942 208 11 57 chr15 49807806 49808422 -51572099 + L1M4 LINE L1 4809 5396 -750 1874 106 3 48 chr15 49808422 49808714 -51571807 + AluY SINE Alu 1 279 -32 996 177 103 29 chr15 49810364 49810607 -51569914 + MIR SINE MIR 2 262 0 350 275 126 22 chr15 49810698 49810880 -51569641 - L1ME3A LINE L1 -2 6168 5968 342 267 92 17 chr15 49810932 49811052 -51569469 - L1MC5 LINE L1 -50 7911 7783 202 271 51 0 chr15 49811233 49811292 -51569229 - MER5A DNA MER1_type -72 117 56 22 0 0 0 chr15 49811717 49811739 -51568782 + AT_rich Low_complexity Low_complexity 1 22 0 722 193 83 0 chr15 49813008 49813153 -51567368 - MER21B LTR ERV1 -379 484 328 828 217 11 21 chr15 49813654 49813843 -51566678 + MER5A DNA MER1_type 1 187 -2 528 309 100 13 chr15 49813952 49814182 -51566339 - MIR SINE MIR -6 256 7 230 296 84 0 chr15 49814349 49814420 -51566101 - L2 LINE L2 -1 3312 3236 248 323 31 31 chr15 49814714 49814810 -51565711 - L2 LINE L2 -17 3255 3160 330 375 62 0 chr15 49815212 49815388 -51565133 - L2 LINE L2 -189 3083 2897 508 284 80 17 chr15 49816510 49816686 -51563835 + MIR3 SINE MIR 20 206 -2 22 0 0 0 chr15 49816786 49816808 -51563713 + AT_rich Low_complexity Low_complexity 1 22 0 429 340 27 2 chr15 49817469 49817621 -51562900 + MIR3 SINE MIR 3 159 -49 339 234 110 55 chr15 49817837 49817982 -51562539 - L2 LINE L2 -5 3308 3156 281 301 12 36 chr15 49819079 49819162 -51561359 + L2 LINE L2 3149 3229 -43 2113 122 0 20 chr15 49819229 49819533 -51560988 + AluSc SINE Alu 1 298 -11 392 308 56 28 chr15 49819765 49819908 -51560613 + MIR3 SINE MIR 37 183 -25 638 285 124 34 chr15 49820870 49821091 -51559430 - MLT1H1 LTR MaLR -4 551 351 198 0 0 0 chr15 49821091 49821113 -51559408 + (TC)n Simple_repeat Simple_repeat 1 22 0 638 285 124 34 chr15 49821113 49821368 -51559153 - MLT1H1 LTR MaLR -204 351 32 24 0 0 0 chr15 49821429 49821453 -51559068 + AT_rich Low_complexity Low_complexity 1 24 0 372 205 197 0 chr15 49822048 49822175 -51558346 - MIR SINE MIR -60 202 51 231 170 0 0 chr15 49822433 49822480 -51558041 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 2009 137 11 29 chr15 49823557 49823907 -51556614 + MER2 DNA MER2_type 1 344 0 984 167 56 14 chr15 49824733 49824948 -51555573 + Charlie4 DNA MER1_type 60 283 -1678 599 207 32 27 chr15 49824949 49825137 -51555384 + Charlie4 DNA MER1_type 1773 1961 0 2023 132 17 3 chr15 49825157 49825453 -51555068 + AluSx SINE Alu 1 300 -12 233 317 97 23 chr15 49825795 49826414 -51554107 - L1MEd LINE L1 -3333 2796 2132 1216 249 32 46 chr15 49826716 49827154 -51553367 - MLT1D LTR MaLR -69 436 5 225 350 49 41 chr15 49827340 49827586 -51552935 - L1MEd LINE L1 -5664 455 208 484 161 46 0 chr15 49827889 49827976 -51552545 + MER58B DNA MER1_type 250 340 -1 197 354 38 0 chr15 49828398 49828477 -51552044 + MIR3 SINE MIR 121 202 -6 423 205 0 0 chr15 49828532 49828615 -51551906 + MIR SINE MIR 178 260 -2 419 286 106 89 chr15 49829068 49829463 -51551058 - LTR33 LTR ERVL 0 521 120 * 1464 200 75 52 chr15 49829461 49829650 -51550871 - MER31B LTR ERV1 -31 435 252 2153 124 124 18 chr15 49829650 49830037 -51550484 + MSTA LTR MaLR 1 428 0 1464 200 75 52 chr15 49830037 49830272 -51550249 - MER31B LTR ERV1 -214 252 1 208 191 95 0 chr15 49830273 49830315 -51550206 + MIR SINE MIR 59 104 -104 567 242 92 40 chr15 49830514 49830817 -51549704 + MLT1J LTR MaLR 1 302 -144 214 327 36 0 chr15 49831017 49831072 -51549449 - L2 LINE L2 -10 3303 3247 560 291 89 0 chr15 49832168 49832381 -51548140 - MIR SINE MIR -11 251 20 388 233 26 35 chr15 49832626 49832742 -51547779 - MIR SINE MIR -90 172 58 484 170 19 0 chr15 49833246 49833352 -51547169 - L1MA8 LINE L1 -5 6286 6179 243 257 29 29 chr15 49834165 49834268 -51546253 + MLT1I LTR MaLR 3 105 -304 241 239 80 0 chr15 49834268 49834356 -51546165 + LTR33 LTR ERVL 1 95 -426 2751 147 14 0 chr15 49834384 49834806 -51545715 - MSTA LTR MaLR 0 428 1 425 248 62 57 chr15 49836032 49836490 -51544031 - L1MC4a LINE L1 -7 6114 5660 773 154 0 0 chr15 49836547 49836664 -51543857 + AluJb SINE Alu 180 296 -16 310 316 0 29 chr15 49836666 49836805 -51543716 - HAL1 LINE L1 -11 2496 2362 * 455 241 51 99 chr15 49836803 49837021 -51543500 - HAL1 LINE L1 -409 2098 1906 2247 125 0 0 chr15 49837021 49837325 -51543196 - AluSx SINE Alu -8 304 1 455 241 51 99 chr15 49837325 49837501 -51543020 - HAL1 LINE L1 -601 1906 1723 367 258 117 8 chr15 49838684 49838804 -51541717 - MIR SINE MIR -107 155 23 405 264 28 0 chr15 49839065 49839171 -51541350 + MER81 DNA DNA 1 109 -5 270 322 21 56 chr15 49839177 49839320 -51541201 + LTR16A LTR ERVL 235 372 -78 1671 178 39 3 chr15 49839794 49840126 -51540395 + L1MD3 LINE L1 5517 5860 -1925 276 102 322 0 chr15 49840131 49840190 -51540331 + MADE1 DNA Mariner 1 78 -2 371 132 0 77 chr15 49840192 49840238 -51540283 + L1MD3 LINE L1 5859 5896 -2099 2710 167 5 72 chr15 49840238 49840790 -51539731 - MLT2B2 LTR ERVL 0 515 1 371 132 0 77 chr15 49840790 49840834 -51539687 + L1MD3 LINE L1 5896 5942 -2053 466 239 18 28 chr15 49840836 49840945 -51539576 - MIR SINE MIR -147 115 8 216 362 53 14 chr15 49842010 49842217 -51538304 + L2 LINE L2 1883 2097 -1217 2567 150 44 2 chr15 49843651 49844103 -51536418 + MER31A LTR ERV1 1 471 -14 2211 102 3 3 chr15 49844104 49844397 -51536124 - AluSq SINE Alu -20 293 1 288 296 69 28 chr15 49844761 49844887 -51535634 + MIR3 SINE MIR 63 198 -10 632 296 76 6 chr15 49845122 49845349 -51535172 - MIR SINE MIR -6 256 20 707 260 17 6 chr15 49847067 49847240 -51533281 - MIR SINE MIR -86 176 2 340 354 113 50 chr15 49849031 49849853 -51530668 - L2 LINE L2 -410 2904 2031 324 276 112 60 chr15 49851326 49851460 -51529061 - MIR SINE MIR -120 142 2 307 310 186 0 chr15 49851628 49851741 -51528780 + L3 LINE CR1 1269 1402 -175 304 254 14 0 chr15 49851814 49851885 -51528636 - MIR SINE MIR -101 161 90 1172 106 6 0 chr15 49852084 49852263 -51528258 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2126 126 13 3 chr15 49852278 49852587 -51527934 - AluSx SINE Alu 0 312 1 398 338 44 38 chr15 49852697 49852857 -51527664 - L2 LINE L2 -2 3270 3110 421 301 175 0 chr15 49853306 49853512 -51527009 + MIR SINE MIR 13 254 -8 1686 187 17 0 chr15 49854733 49855022 -51525499 - AluJo SINE Alu -18 294 1 324 317 143 30 chr15 49855746 49855976 -51524545 + MIR SINE MIR 7 262 0 1671 191 10 7 chr15 49856376 49856664 -51523857 - AluJo SINE Alu -23 289 1 281 341 36 43 chr15 49858087 49858225 -51522296 - MIR3 SINE MIR -62 146 10 2395 241 52 69 chr15 49858507 49859647 -51520874 - MLT1B-int LTR MaLR -134 1237 1 1315 220 71 40 chr15 49859647 49860025 -51520496 - MLT1B LTR MaLR 0 390 1 431 310 0 0 chr15 49860265 49860378 -51520143 - MIR SINE MIR -85 177 65 440 219 133 0 chr15 49860392 49860497 -51520024 - L2 LINE L2 0 3313 3195 205 321 174 0 chr15 49860742 49860851 -51519670 - MIR SINE MIR -58 204 77 448 313 159 9 chr15 49862335 49862416 -51518105 - MIR SINE MIR -16 246 178 7098 42 16 5 chr15 49862416 49863353 -51517168 - L1PA7 LINE L1 0 6154 5212 448 313 159 9 chr15 49863353 49863485 -51517036 - MIR SINE MIR -84 178 1 268 186 42 24 chr15 49863805 49863972 -51516549 + (TA)n Simple_repeat Simple_repeat 1 170 0 395 165 5 77 chr15 49863998 49864192 -51516329 + (TA)n Simple_repeat Simple_repeat 1 180 0 216 239 0 60 chr15 49864203 49864337 -51516184 + (TA)n Simple_repeat Simple_repeat 1 126 0 2380 72 0 25 chr15 49864535 49864854 -51515667 - AluY SINE Alu 0 311 1 659 265 136 20 chr15 49865444 49865738 -51514783 + MLT1J LTR MaLR 9 336 -175 909 251 66 57 chr15 49866001 49866524 -51513997 - LTR38 LTR ERV1 0 541 31 1185 223 45 6 chr15 49867272 49867609 -51512912 + L1MC3 LINE L1 7436 7785 0 21 36 0 0 chr15 49867609 49867637 -51512884 + AT_rich Low_complexity Low_complexity 1 28 0 419 365 81 0 chr15 49868908 49869056 -51511465 - L2 LINE L2 -9 3263 3104 404 82 16 0 chr15 49870388 49870449 -51510072 + (CA)n Simple_repeat Simple_repeat 1 62 0 203 103 26 26 chr15 49870521 49870560 -51509961 + CT-rich Low_complexity Low_complexity 2 40 0 4415 154 21 59 chr15 49871767 49872788 -51507733 + L1MC3 LINE L1 6816 7774 -11 2422 93 0 3 chr15 49872791 49873101 -51507420 + AluSg SINE Alu 2 310 0 263 217 0 67 chr15 49874281 49874341 -51506180 + L3 LINE CR1 1500 1555 -22 2440 183 8 92 chr15 49874405 49874440 -51506081 - MLT2B3 LTR ERVL -6 548 512 195 100 0 0 chr15 49874440 49874470 -51506051 + (TA)n Simple_repeat Simple_repeat 1 30 0 2440 183 8 92 chr15 49874470 49875030 -51505491 - MLT2B3 LTR ERVL -42 512 3 5121 110 30 7 chr15 49875886 49876725 -51503796 - L1MA3 LINE L1 0 6305 5448 418 61 30 0 chr15 49876914 49876980 -51503541 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 732 304 62 4 chr15 49877736 49877963 -51502558 - MIR SINE MIR -19 243 4 1613 249 73 9 chr15 49878181 49878731 -51501790 - HsTC2 DNA Tc2 -3 1895 1311 1400 193 141 19 chr15 49878736 49879061 -51501460 + MLT2B1 LTR ERVL 114 489 -31 207 69 0 0 chr15 49879061 49879090 -51501431 + (CA)n Simple_repeat Simple_repeat 1 29 0 1400 193 141 19 chr15 49879090 49879126 -51501395 + MLT2B1 LTR ERVL 489 519 -1 743 238 43 22 chr15 49879180 49879365 -51501156 - MER5A DNA MER1_type 0 189 1 295 280 104 8 chr15 49879365 49879490 -51501031 - HsTC2 DNA Tc2 -1760 138 2 26 0 0 0 chr15 49879541 49879567 -51500954 + AT_rich Low_complexity Low_complexity 1 26 0 5447 15 0 0 chr15 49879567 49880181 -51500340 - L1PA3 LINE L1 0 6155 5542 327 77 31 15 chr15 49880327 49880392 -51500129 + (TA)n Simple_repeat Simple_repeat 2 67 0 220 262 167 0 chr15 49880462 49880546 -51499975 - L3 LINE CR1 -123 1454 1357 333 345 104 12 chr15 49881203 49881452 -51499069 + L2 LINE L2 201 472 -2842 1871 154 30 25 chr15 49881529 49881892 -51498629 - MLT1A1 LTR MaLR 0 365 1 314 358 14 39 chr15 49881921 49882128 -51498393 + L2 LINE L2 2467 2668 -646 181 293 102 18 chr15 49882333 49882471 -51498050 - MIR3 SINE MIR -6 202 50 490 265 136 12 chr15 49884559 49884721 -51495800 + MIR3 SINE MIR 23 204 -4 21 89 0 0 chr15 49885854 49885910 -51494611 + AT_rich Low_complexity Low_complexity 1 56 0 602 196 52 152 chr15 49885913 49886321 -51494200 + L1MC4a LINE L1 5402 5768 -394 * 807 158 87 11 chr15 49886316 49886387 -51494134 + L1MA9 LINE L1 6115 6179 -133 228 86 0 0 chr15 49886387 49886422 -51494099 + (TA)n Simple_repeat Simple_repeat 2 36 0 807 158 87 11 chr15 49886422 49886533 -51493988 + L1MA9 LINE L1 6179 6311 -1 731 314 20 0 chr15 49886610 49886865 -51493656 + L1ME3 LINE L1 5522 5781 -2027 1228 244 43 11 chr15 49886893 49887242 -51493279 + L1ME3 LINE L1 5775 6134 -28 234 344 76 66 chr15 49887621 49887923 -51492598 - L2 LINE L2 -2 3270 2966 318 26 0 0 chr15 49889303 49889342 -51491179 + (CA)n Simple_repeat Simple_repeat 2 40 0 1384 263 50 28 chr15 49889376 49890138 -51490383 - HERVL LTR ERVL -3591 2063 1275 369 261 39 15 chr15 49890145 49890275 -51490246 + L1M4 LINE L1 3043 3175 -2971 320 221 26 0 chr15 49890455 49890532 -51489989 - Tigger5 DNA MER2_type -2244 79 1 265 277 69 19 chr15 49890532 49890691 -51489830 + L1MC4a LINE L1 5834 6000 -1808 342 361 34 24 chr15 49890902 49891110 -51489411 + L1MC4a LINE L1 6429 6638 -1170 * 386 335 62 41 chr15 49891100 49891294 -51489227 + L1ME LINE L1 146 343 -5862 312 310 124 16 chr15 49891685 49891927 -51488594 + L1ME LINE L1 793 1060 -5336 644 285 72 29 chr15 49891958 49892544 -51487977 + L1ME LINE L1 1072 1682 -4714 263 328 0 8 chr15 49892623 49892742 -51487779 + L1ME LINE L1 1703 1820 -4576 21 36 0 0 chr15 49892866 49892894 -51487627 + AT_rich Low_complexity Low_complexity 1 28 0 971 294 125 13 chr15 49892911 49893673 -51486848 - L1M4 LINE L1 -1712 4434 3588 300 355 100 17 chr15 49893941 49894172 -51486349 - L1MEd LINE L1 -5700 419 170 312 210 0 58 chr15 49894341 49894419 -51486102 + MIR SINE MIR 88 102 -106 1745 151 51 43 chr15 49894419 49894791 -51485730 + THE1C LTR MaLR 1 375 0 312 210 0 58 chr15 49894791 49894831 -51485690 + MIR SINE MIR 102 143 -65 325 255 21 53 chr15 49895245 49895339 -51485182 - MIR SINE MIR -70 192 102 201 277 205 0 chr15 49897153 49897236 -51483285 - MER5B DNA MER1_type -78 100 1 719 247 71 6 chr15 49897256 49897426 -51483095 - MER5A DNA MER1_type 0 189 9 275 259 214 27 chr15 49897438 49897550 -51482971 + L2 LINE L2 3127 3259 -13 2216 95 0 7 chr15 49897693 49898010 -51482511 + AluSp SINE Alu 1 315 0 381 226 70 0 chr15 49899945 49900060 -51480461 + MIR SINE MIR 134 256 -6 701 340 21 4 chr15 49901037 49901278 -51479243 + MIR SINE MIR 10 254 -8 506 216 61 78 chr15 49901564 49901795 -51478726 - MER102b DNA MER1_type -11 330 104 966 219 17 9 chr15 49901832 49902065 -51478456 + MER96B DNA MER1_type? 1 235 -182 465 228 228 30 chr15 49902550 49902717 -51477804 + MIR SINE MIR 2 201 -61 7838 20 1 1 chr15 49902900 49904584 -51475937 - L1PA3 LINE L1 0 6155 4459 207 200 0 0 chr15 49904703 49904748 -51475773 + A-rich Low_complexity Low_complexity 1 45 0 316 197 98 66 chr15 49904948 49905070 -51475451 + MIR SINE MIR 14 140 -68 2416 180 34 10 chr15 49905653 49906069 -51474452 - MSTB LTR MaLR 0 426 1 281 265 0 41 chr15 49906486 49906584 -51473937 + CT-rich Low_complexity Low_complexity 2 95 0 262 284 14 0 chr15 49906597 49906671 -51473850 - L2 LINE L2 -5 3308 3234 546 274 122 39 chr15 49907077 49907332 -51473189 - L2 LINE L2 -13 3300 3025 231 280 27 13 chr15 49907350 49907425 -51473096 - MER5B DNA MER1_type -83 95 20 1205 220 5 0 chr15 49907863 49908077 -51472444 - MER58A DNA MER1_type -6 218 4 377 293 20 0 chr15 49908370 49908469 -51472052 + MIR3 SINE MIR 104 204 -4 252 140 20 20 chr15 49910037 49910087 -51470434 - L1MB3 LINE L1 -28 6155 6106 597 270 10 29 chr15 49910215 49910419 -51470102 - MIR SINE MIR -4 258 59 361 315 121 6 chr15 49910763 49910928 -51469593 + MIR SINE MIR 4 187 -75 230 315 54 0 chr15 49910970 49911062 -51469459 - L2 LINE L2 -2 3270 3174 562 271 47 12 chr15 49915262 49915440 -51465081 + MIR SINE MIR 37 218 -44 511 289 24 62 chr15 49916948 49917159 -51463362 + L2 LINE L2 3111 3313 0 884 329 58 22 chr15 49917353 49917901 -51462620 - L1MC4a LINE L1 -1927 5881 5314 22 56 0 0 chr15 49919363 49919399 -51461122 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chr15 49919725 49919753 -51460768 + AT_rich Low_complexity Low_complexity 1 28 0 228 283 211 33 chr15 49920433 49920585 -51459936 + MIR SINE MIR 20 198 -64 1642 210 34 41 chr15 49921601 49921694 -51458827 + LTR52 LTR ERVL 1 93 -328 2380 123 53 14 chr15 49921694 49922053 -51458468 - THE1C LTR MaLR 0 375 3 1642 210 34 41 chr15 49922053 49922373 -51458148 + LTR52 LTR ERVL 93 411 -10 882 245 69 0 chr15 49922487 49922691 -51457830 - MER58A DNA MER1_type -6 218 1 910 280 81 37 chr15 49924359 49924809 -51455712 - MLT1J2 LTR MaLR 0 450 10 1832 163 0 7 chr15 49925257 49925564 -51454957 + AluJb SINE Alu 1 305 -7 21 0 0 0 chr15 49925735 49925756 -51454765 + AT_rich Low_complexity Low_complexity 1 21 0 436 218 0 0 chr15 49926081 49926159 -51454362 + MER21B LTR ERV1 12 89 -774 709 234 26 13 chr15 49926214 49926368 -51454153 + MER21B LTR ERV1 98 253 -610 1132 207 25 54 chr15 49926373 49926653 -51453868 + MER21B LTR ERV1 479 750 -113 611 286 50 54 chr15 49927111 49927352 -51453169 + MIR SINE MIR 2 241 -21 21 0 0 0 chr15 49927844 49927865 -51452656 + AT_rich Low_complexity Low_complexity 1 21 0 294 256 165 16 chr15 49927887 49928008 -51452513 - MIR SINE MIR -50 212 74 331 182 190 66 chr15 49928389 49928510 -51452011 + MIR SINE MIR 124 259 -3 328 314 86 0 chr15 49928709 49928849 -51451672 + ERVL-F LTR ERVL 1624 1775 -3989 288 323 31 0 chr15 49928824 49928954 -51451567 + ERVL-F LTR ERVL 1704 1837 -3159 * 1474 254 80 41 chr15 49928969 49929533 -51450988 + ERVL-F LTR ERVL 5156 5741 -23 1496 268 154 3 chr15 49929551 49930123 -51450398 + MLT2F LTR ERVL 6 663 0 238 338 115 14 chr15 49930413 49930552 -51449969 - MIR3 SINE MIR -48 160 8 206 250 0 0 chr15 49932839 49932883 -51447638 + (CAT)n Simple_repeat Simple_repeat 3 46 0 392 267 75 41 chr15 49933534 49933680 -51446841 + MER69A DNA AcHobo 26 176 -1 317 233 57 0 chr15 49933691 49933800 -51446721 - MIR SINE MIR -71 191 73 279 374 98 5 chr15 49934836 49935050 -51445471 + L2 LINE L2 2819 3052 -261 496 254 56 35 chr15 49935651 49935793 -51444728 + L2 LINE L2 3128 3272 0 418 301 49 14 chr15 49935912 49936055 -51444466 - MIR SINE MIR -107 155 8 335 335 37 19 chr15 49936102 49936263 -51444258 - MIR SINE MIR 0 262 99 346 183 14 14 chr15 49936782 49936853 -51443668 - MLT1C LTR MaLR 0 505 435 181 111 0 28 chr15 49936914 49936950 -51443571 - L2 LINE L2 0 3313 3279 1004 225 119 85 chr15 49936960 49937231 -51443290 - MLT1C LTR MaLR -76 391 131 2036 99 27 24 chr15 49937231 49937554 -51442967 - AluSg1 SINE Alu 0 309 2 1008 61 27 0 chr15 49937554 49937702 -51442819 + (TTTC)n Simple_repeat Simple_repeat 2 153 0 2019 112 0 21 chr15 49937703 49937990 -51442531 - AluSq SINE Alu -32 281 1 2578 55 3 3 chr15 49937999 49938309 -51442212 - AluY SINE Alu -1 310 1 1004 225 119 85 chr15 49938309 49938402 -51442119 - MLT1C LTR MaLR -343 124 1 2233 165 11 22 chr15 49938491 49938860 -51441661 + MLT1A1 LTR MaLR 1 365 0 266 312 138 7 chr15 49938907 49939045 -51441476 - L2 LINE L2 -13 3259 3104 228 339 80 27 chr15 49939119 49939231 -51441290 - MIR3 SINE MIR -52 156 39 365 244 98 0 chr15 49940229 49940352 -51440169 - MER103 DNA DNA -24 142 8 550 345 25 8 chr15 49940619 49940854 -51439667 - MIR SINE MIR -17 245 7 23 0 0 0 chr15 49941011 49941034 -51439487 + AT_rich Low_complexity Low_complexity 1 23 0 1654 115 33 29 chr15 49941048 49941290 -51439231 - THE1C LTR MaLR 0 375 151 2409 128 16 25 chr15 49941290 49941657 -51438864 - THE1B LTR MaLR 0 364 1 1654 115 33 29 chr15 49941657 49941691 -51438830 - THE1C LTR MaLR -224 151 119 219 333 0 14 chr15 49941823 49941895 -51438626 + L2 LINE L2 3203 3273 -40 23 54 0 0 chr15 49942245 49942282 -51438239 + AT_rich Low_complexity Low_complexity 1 37 0 207 302 32 0 chr15 49942880 49942943 -51437578 + L2 LINE L2 2267 2331 -983 1590 274 81 35 chr15 49943627 49944284 -51436237 + L2 LINE L2 2127 2813 -501 2219 121 38 0 chr15 49944297 49944612 -51435909 + MER1B DNA MER1_type 1 327 -12 2159 174 29 3 chr15 49944612 49944996 -51435525 + L1MC2 LINE L1 5940 6333 -11 345 294 52 43 chr15 49945010 49945247 -51435274 + L2 LINE L2 2782 3035 -278 311 364 7 58 chr15 49945512 49945666 -51434855 + L2 LINE L2 3127 3272 0 246 62 0 0 chr15 49947281 49947313 -51433208 + (TCCA)n Simple_repeat Simple_repeat 4 35 0 237 108 0 0 chr15 49947315 49947352 -51433169 + (CA)n Simple_repeat Simple_repeat 2 38 0 228 293 8 73 chr15 49948663 49948786 -51431735 + MIR3 SINE MIR 55 169 -39 782 259 74 4 chr15 49948920 49949163 -51431358 + L1ME3A LINE L1 5807 6066 -104 2677 111 58 23 chr15 49949170 49949603 -51430918 - LTR7 LTR ERV1 -2 448 1 2496 107 45 35 chr15 49949603 49950197 -51430324 - HERVH LTR ERV1 0 7713 5600 4401 142 3 1 chr15 49950198 49950859 -51429662 - HERVH LTR ERV1 -2564 5149 4488 3344 120 6 2 chr15 49950861 49951361 -51429160 - HERVH LTR ERV1 -3720 3993 3492 897 143 20 0 chr15 49951351 49951498 -51429023 - HERVH LTR ERV1 -4423 3290 3141 * 15528 100 48 48 chr15 49951493 49954426 -51426095 - HERVH LTR ERV1 -4726 2987 1 2753 107 58 21 chr15 49954428 49954860 -51425661 - LTR7 LTR ERV1 -2 448 1 306 203 14 27 chr15 49954877 49954951 -51425570 + L1ME3A LINE L1 6084 6156 -14 750 250 44 32 chr15 49955011 49955263 -51425258 - MIR SINE MIR -3 259 5 2255 109 0 16 chr15 49957957 49958270 -51422251 + AluSg SINE Alu 1 308 -2 946 263 203 32 chr15 49959010 49959525 -51420996 - MLT1G1 LTR MaLR 0 555 1 1130 258 118 47 chr15 49959733 49960199 -51420322 - MLT1G1 LTR MaLR -94 501 3 732 250 12 12 chr15 49960199 49960367 -51420154 + L3 LINE CR1 1409 1576 -1 6254 97 13 0 chr15 49961896 49963027 -51417494 - L1PA8 LINE L1 -2 6170 5024 556 308 72 28 chr15 49963149 49963399 -51417122 - MIR SINE MIR 0 262 2 290 299 64 37 chr15 49964777 49964964 -51415557 + L2 LINE L2 2076 2267 -1047 2012 196 58 23 chr15 49965628 49966112 -51414409 + MLT1D LTR MaLR 1 501 -4 538 366 100 30 chr15 49966158 49966820 -51413701 + L2 LINE L2 156 863 -2451 498 313 109 47 chr15 49966902 49967369 -51413152 + L2 LINE L2 2378 2873 -441 1343 217 16 13 chr15 49968656 49968974 -51411547 - MER58B DNA MER1_type -22 319 1 259 191 183 38 chr15 49971430 49971561 -51408960 + L1ME4a LINE L1 5685 5834 -287 237 276 46 0 chr15 49971653 49971740 -51408781 + L1ME4a LINE L1 5965 6055 -66 21 0 0 0 chr15 49972801 49972822 -51407699 + AT_rich Low_complexity Low_complexity 1 21 0 260 324 20 0 chr15 49973151 49973253 -51407268 - MER117 DNA MER1_type -56 141 38 553 318 33 21 chr15 49974707 49974949 -51405572 - MIR SINE MIR 0 262 18 333 285 15 0 chr15 49975399 49975536 -51404985 - MER117 DNA MER1_type -55 142 4 317 240 0 135 chr15 49975542 49975646 -51404875 + MIR SINE MIR 37 126 -82 321 292 67 28 chr15 49975798 49975951 -51404570 + MIR SINE MIR 30 188 -74 186 196 304 11 chr15 49976374 49976466 -51404055 - L2 LINE L2 -6 3266 3148 26 30 0 0 chr15 49976750 49976783 -51403738 + AT_rich Low_complexity Low_complexity 1 33 0 516 291 77 5 chr15 49976784 49976980 -51403541 - L1ME3A LINE L1 -58 6112 5903 200 206 0 0 chr15 49978672 49978706 -51401815 + (TATATG)n Simple_repeat Simple_repeat 6 39 0 1474 186 40 93 chr15 49980455 49980981 -51399540 + LTR54B LTR ERV1 1 498 0 395 300 118 61 chr15 49981114 49981658 -51398863 - L2 LINE L2 -4 3309 2720 318 106 0 0 chr15 49981658 49981705 -51398816 + (ATATG)n Simple_repeat Simple_repeat 2 48 0 395 300 118 61 chr15 49981705 49981817 -51398704 - L2 LINE L2 -593 2720 2616 230 254 66 77 chr15 49981973 49982154 -51398367 + MIR SINE MIR 84 262 0 222 37 0 0 chr15 49983317 49983344 -51397177 + (TC)n Simple_repeat Simple_repeat 1 27 0 360 0 0 0 chr15 49983346 49983386 -51397135 + (TG)n Simple_repeat Simple_repeat 1 40 0 249 296 111 12 chr15 49983690 49983771 -51396750 - L2 LINE L2 -34 3279 3191 525 283 19 13 chr15 49983800 49983959 -51396562 - MIR SINE MIR -52 210 51 1337 217 119 12 chr15 49984064 49984401 -51396120 - MLT1A2 LTR MaLR -1 373 1 265 305 74 0 chr15 49985577 49985672 -51394849 - MIR SINE MIR -57 205 104 230 315 41 14 chr15 49985707 49985780 -51394741 + L2 LINE L2 3176 3250 -22 236 275 22 22 chr15 49986446 49986537 -51393984 + MIR3 SINE MIR 106 196 -12 264 308 75 19 chr15 49988200 49988307 -51392214 - L2 LINE L2 -24 3289 3177 746 279 70 45 chr15 49988487 49989045 -51391476 - MER115 DNA AcHobo -26 667 3 3722 284 94 19 chr15 49989068 49990398 -51390123 + L2 LINE L2 368 1825 -1489 2346 35 74 0 chr15 49990398 49990681 -51389840 - AluY SINE Alu -7 304 1 3722 284 94 19 chr15 49990681 49990844 -51389677 + L2 LINE L2 1825 1974 -1340 212 184 0 20 chr15 49991012 49991061 -51389460 + CT-rich Low_complexity Low_complexity 1 48 0 251 28 28 0 chr15 49991427 49991463 -51389058 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 3841 7 0 0 chr15 49991463 49991893 -51388628 - L1PA2 LINE L1 -18 6137 5708 203 147 0 0 chr15 49993229 49993263 -51387258 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 288 278 38 53 chr15 49993309 49993442 -51387079 + MIR SINE MIR 85 215 -47 183 194 0 0 chr15 49994064 49994095 -51386426 - L3 LINE CR1 -1429 148 118 886 179 92 15 chr15 49994243 49994438 -51386083 - MER6B DNA MER2_type 0 210 1 1053 324 147 9 chr15 49995049 49995595 -51384926 + L3 LINE CR1 946 1566 -11 748 156 47 8 chr15 49995871 49995999 -51384522 + L1MC1 LINE L1 6193 6325 -8 822 317 95 4 chr15 49996101 49996562 -51383959 - LTR33 LTR ERVL -17 504 2 2188 105 0 0 chr15 49997800 49998076 -51382445 + AluSx SINE Alu 7 282 -30 211 315 62 69 chr15 49999355 49999485 -51381036 + L2 LINE L2 2726 2854 -460 238 381 144 0 chr15 49999571 49999689 -51380832 - L2 LINE L2 -1 3271 3137 873 339 53 18 chr15 49999814 50000249 -51380272 - L2 LINE L2 -303 3010 2565 506 277 65 82 chr15 50000278 50000570 -51379951 + L2 LINE L2 2986 3272 0 203 152 0 0 chr15 50001147 50001180 -51379341 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 695 194 0 23 chr15 50001189 50001318 -51379203 + Tigger3(Golem) DNA MER2_type 27 152 -2877 * 1241 145 77 5 chr15 50001313 50001534 -51378987 + Tigger3(Golem) DNA MER2_type 2792 3028 -1 180 200 0 0 chr15 50001534 50001574 -51378947 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 252 0 0 0 chr15 50001589 50001617 -51378904 + (CA)n Simple_repeat Simple_repeat 2 29 0 480 226 35 0 chr15 50001823 50001938 -51378583 + MIR SINE MIR 98 216 -46 427 338 88 48 chr15 50001934 50002334 -51378187 - L2 LINE L2 -339 2975 2560 * 546 248 186 0 chr15 50002856 50002881 -51377640 - MIR SINE MIR -32 230 211 351 0 0 0 chr15 50002881 50002920 -51377601 + (CA)n Simple_repeat Simple_repeat 2 40 0 546 248 186 0 chr15 50002920 50003039 -51377482 - MIR SINE MIR -51 211 59 283 234 70 67 chr15 50005044 50005175 -51375346 + MIR SINE MIR 30 166 -42 455 200 240 17 chr15 50005681 50005856 -51374665 - LTR50 LTR ERVL -27 768 555 * 673 252 219 8 chr15 50005850 50006207 -51374314 - LTR50 LTR ERVL -353 442 11 2373 52 0 7 chr15 50006454 50006741 -51373780 + AluY SINE Alu 21 305 -6 2222 98 10 3 chr15 50006743 50007049 -51373472 + AluSx SINE Alu 1 308 -4 1241 78 0 18 chr15 50007066 50007211 -51373310 + MER107 DNA MER1_type 1 144 -53 182 36 0 36 chr15 50007211 50007239 -51373282 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1241 78 0 18 chr15 50007239 50007259 -51373262 + MER107 DNA MER1_type 144 163 -34 269 336 72 8 chr15 50007327 50007452 -51373069 - L2 LINE L2 -495 2819 2687 750 242 63 83 chr15 50007741 50008104 -51372417 - L1MC/D LINE L1 -2174 5634 5279 277 282 107 0 chr15 50008217 50008366 -51372155 - L1MC/D LINE L1 -1097 5049 4885 36 40 0 0 chr15 50008402 50008452 -51372069 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr15 50008725 50008746 -51371775 + AT_rich Low_complexity Low_complexity 1 21 0 249 190 35 0 chr15 50010399 50010457 -51370064 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 1004 212 23 18 chr15 50010471 50010688 -51369833 - MER20 DNA MER1_type -1 218 1 283 323 251 10 chr15 50010762 50010957 -51369564 - MIR SINE MIR -17 245 4 182 326 0 0 chr15 50011164 50011210 -51369311 + L2 LINE L2 3223 3268 -4 313 268 114 16 chr15 50011827 50011950 -51368571 - MIR SINE MIR -97 165 31 2560 105 31 0 chr15 50011991 50012344 -51368177 + THE1B LTR MaLR 1 364 0 284 329 75 25 chr15 50013599 50013760 -51366761 - MIR SINE MIR -65 197 29 924 169 106 29 chr15 50013780 50013987 -51366534 - MER58A DNA MER1_type -1 223 1 306 288 93 60 chr15 50014177 50014392 -51366129 + MIR SINE MIR 20 241 -21 978 184 25 1 chr15 50014392 50014705 -51365816 - MLT1A1 LTR MaLR 0 365 10 1087 249 123 37 chr15 50014921 50015351 -51365170 + MLT1L LTR MaLR 142 608 -7 234 418 9 18 chr15 50015352 50015462 -51365059 + MIR3 SINE MIR 51 159 -49 1113 192 86 13 chr15 50015568 50015870 -51364651 + MER33 DNA MER1_type 1 324 0 236 326 0 0 chr15 50016517 50016566 -51363955 + MER58 DNA MER1_type 1 49 -292 * 320 215 0 0 chr15 50016562 50016627 -51363894 + MER58 DNA MER1_type 2356 2420 0 253 226 16 0 chr15 50016645 50016707 -51363814 + GA-rich Low_complexity Low_complexity 1 63 0 321 157 24 24 chr15 50016707 50016790 -51363731 + A-rich Low_complexity Low_complexity 5 87 0 207 0 0 0 chr15 50017074 50017097 -51363424 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 5660 53 21 1 chr15 50017099 50017860 -51362661 - L1PA2 LINE L1 -2 6153 5378 6466 24 0 0 chr15 50018024 50019121 -51361400 - L1P1 LINE L1 -448 5707 4611 * 11026 26 0 0 chr15 50019120 50020419 -51360102 + L1P LINE L1 3583 4881 -1265 801 119 19 127 chr15 50020519 50020888 -51359633 + L1P LINE L1 4289 4617 -1529 319 286 52 26 chr15 50020958 50021112 -51359409 - L1M4 LINE L1 -3153 2993 2836 29 28 0 0 chr15 50021242 50021278 -51359243 + AT_rich Low_complexity Low_complexity 1 36 0 1211 170 18 31 chr15 50021672 50021896 -51358625 + AluJb SINE Alu 88 308 -4 429 286 75 57 chr15 50022038 50022370 -51358151 - L1 LINE L1 -1542 4604 4267 2567 115 0 3 chr15 50022557 50022922 -51357599 - THE1B LTR MaLR 0 364 1 896 138 33 7 chr15 50023227 50023379 -51357142 - MLT2C2 LTR ERVL -213 251 96 2473 94 5 27 chr15 50023389 50023762 -51356759 - L1PB1 LINE L1 -7 6144 5780 457 167 16 0 chr15 50023765 50023891 -51356630 + (TA)n Simple_repeat Simple_repeat 2 129 0 6189 179 11 6 chr15 50023892 50025719 -51354802 - L1PB1 LINE L1 -353 5798 3970 673 132 9 0 chr15 50025719 50025825 -51354696 - MLT2C2 LTR ERVL -357 107 1 3310 58 2 0 chr15 50026407 50026862 -51353659 + L1PA8 LINE L1 5737 6192 0 365 276 0 16 chr15 50027180 50027303 -51353218 - MER94 DNA DNA -9 125 5 1002 136 36 54 chr15 50028321 50028542 -51351979 + MER20 DNA MER1_type 1 217 -2 606 307 67 11 chr15 50029394 50029627 -51350894 + MIR SINE MIR 21 260 -2 1742 131 0 4 chr15 50030384 50030628 -51349893 - AluSq SINE Alu -70 243 1 1580 266 174 33 chr15 50030641 50031647 -51348874 - HAL1 LINE L1 -240 2267 1120 861 125 132 0 chr15 50031648 50031784 -51348737 - AluSg/x SINE Alu -22 288 135 279 241 0 0 chr15 50031841 50031895 -51348626 + L2 LINE L2 3223 3276 -37 252 0 0 0 chr15 50031903 50031931 -51348590 + (A)n Simple_repeat Simple_repeat 1 28 0 2461 158 16 5 chr15 50031986 50032026 -51348495 - L1MB2 LINE L1 -119 6052 6013 1357 234 112 30 chr15 50032026 50032632 -51347889 - L1MD2 LINE L1 -355 6004 5338 962 304 177 10 chr15 50032656 50033147 -51347374 - HAL1 LINE L1 -1886 621 49 1911 131 32 0 chr15 50033597 50033967 -51346554 - AluSx SINE Alu 0 379 1 264 256 25 76 chr15 50034500 50034636 -51345885 - MIR SINE MIR -63 145 24 368 136 117 0 chr15 50037240 50037343 -51343178 + MER96B DNA MER1_type? 65 179 -238 22 56 0 0 chr15 50037945 50037981 -51342540 + AT_rich Low_complexity Low_complexity 1 36 0 257 203 0 0 chr15 50038558 50038622 -51341899 + L1MC4 LINE L1 6640 6703 -1339 189 0 0 0 chr15 50038632 50038653 -51341868 + (CA)n Simple_repeat Simple_repeat 2 22 0 26 0 0 0 chr15 50038704 50038730 -51341791 + AT_rich Low_complexity Low_complexity 1 26 0 300 342 56 12 chr15 50039381 50039542 -51340979 + MARNA DNA Mariner 16 183 -403 207 220 0 0 chr15 50041517 50041567 -51338954 + GA-rich Low_complexity Low_complexity 4 53 0 21 36 0 0 chr15 50045616 50045644 -51334877 + AT_rich Low_complexity Low_complexity 1 28 0 242 29 29 0 chr15 50047090 50047125 -51333396 + (GA)n Simple_repeat Simple_repeat 2 37 0 183 246 0 66 chr15 50049224 50049285 -51331236 - L2 LINE L2 0 3313 3257 211 365 43 9 chr15 50049848 50049963 -51330558 - L2 LINE L2 -10 3303 3185 183 183 0 100 chr15 50051596 50051656 -51328865 + L3 LINE CR1 898 951 -626 180 0 0 0 chr15 50052907 50052927 -51327594 + (TA)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr15 50052934 50052962 -51327559 + AT_rich Low_complexity Low_complexity 1 28 0 404 234 73 36 chr15 50053050 50053187 -51327334 + MIR3 SINE MIR 51 192 -16 4974 150 28 3 chr15 50055816 50056685 -51323836 + L1MA4 LINE L1 5402 6291 -9 213 392 42 39 chr15 50057402 50057662 -51322859 + L2 LINE L2 2823 3083 -189 637 265 39 29 chr15 50061005 50061209 -51319312 + MIR SINE MIR 57 262 0 22 0 0 0 chr15 50061621 50061643 -51318878 + AT_rich Low_complexity Low_complexity 1 22 0 316 322 60 38 chr15 50062490 50062673 -51317848 + L1M2 LINE L1 2325 2511 -4338 498 344 122 33 chr15 50063315 50064143 -51316378 + L1M2 LINE L1 2843 3744 -3104 42070 35 21 5 chr15 50064149 50070198 -51310323 + L1PA2 LINE L1 4 6155 0 469 305 29 42 chr15 50070198 50070437 -51310084 + L1M2 LINE L1 3879 4114 -2734 381 293 44 40 chr15 50070479 50070728 -51309793 + L1M2 LINE L1 4605 4854 -1994 1605 86 10 0 chr15 50070742 50070951 -51309570 - AluSp SINE Alu -102 211 1 288 323 116 26 chr15 50070967 50071122 -51309399 - L2 LINE L2 -2 3270 3102 209 33 33 0 chr15 50071454 50071484 -51309037 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 286 304 40 54 chr15 50072623 50072771 -51307750 - L2 LINE L2 0 3313 3168 260 345 42 14 chr15 50072942 50073084 -51307437 - MIR SINE MIR -55 207 62 235 276 103 35 chr15 50073580 50073667 -51306854 - L2 LINE L2 -11 3261 3169 1099 205 42 5 chr15 50073698 50073913 -51306608 - MER58A DNA MER1_type 0 224 2 638 298 69 67 chr15 50074280 50074912 -51305609 - L2 LINE L2 -2 3311 2679 264 77 0 0 chr15 50075370 50075409 -51305112 + (CA)n Simple_repeat Simple_repeat 2 40 0 240 86 0 0 chr15 50075649 50075684 -51304837 + (TG)n Simple_repeat Simple_repeat 2 36 0 937 241 51 5 chr15 50078372 50078567 -51301954 + MER63A DNA MER1_type 7 210 0 233 360 65 20 chr15 50078574 50078727 -51301794 - MIR SINE MIR -102 160 1 213 174 22 22 chr15 50080346 50080392 -51300129 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 347 341 12 17 chr15 50080890 50081063 -51299458 + MER117 DNA MER1_type 6 177 -20 182 296 136 34 chr15 50081119 50081207 -51299314 + MIR3 SINE MIR 86 182 -26 25 65 0 0 chr15 50084814 50084860 -51295661 + AT_rich Low_complexity Low_complexity 1 46 0 309 268 304 0 chr15 50085040 50085152 -51295369 + MER5A DNA MER1_type 44 189 0 683 258 0 22 chr15 50085160 50085342 -51295179 + MER5B DNA MER1_type 1 178 0 23 0 0 0 chr15 50086136 50086159 -51294362 + AT_rich Low_complexity Low_complexity 1 23 0 24 41 0 20 chr15 50086276 50086304 -51294217 + AT_rich Low_complexity Low_complexity 1 29 -19 910 44 0 0 chr15 50086304 50086418 -51294103 - L1PA14 LINE L1 -3 6158 6045 24 41 0 20 chr15 50086418 50086438 -51294083 + AT_rich Low_complexity Low_complexity 29 48 0 23 54 0 0 chr15 50087163 50087200 -51293321 + AT_rich Low_complexity Low_complexity 1 37 0 195 424 0 17 chr15 50087398 50087516 -51293005 + MIR SINE MIR 21 136 -72 269 347 100 13 chr15 50087688 50087838 -51292683 - MER5A DNA MER1_type -11 178 16 817 323 81 0 chr15 50088371 50088743 -51291778 - L1MC4a LINE L1 -1896 5912 5511 529 245 80 80 chr15 50088920 50089157 -51291364 - MIR SINE MIR -14 248 12 185 359 28 69 chr15 50089141 50089358 -51291163 - L2 LINE L2 -721 2593 2386 * 22 88 0 0 chr15 50090660 50090717 -51289804 + AT_rich Low_complexity Low_complexity 1 57 0 206 121 0 0 chr15 50090904 50090937 -51289584 + (T)n Simple_repeat Simple_repeat 1 33 0 21 89 0 0 chr15 50090981 50091037 -51289484 + AT_rich Low_complexity Low_complexity 1 56 0 398 314 108 36 chr15 50091248 50091554 -51288967 - L3 LINE CR1 -108 1469 1142 1317 118 4 13 chr15 50092534 50092762 -51287759 - L1MA8 LINE L1 0 6291 6066 3759 127 26 17 chr15 50092771 50093686 -51286835 + L1PA12 LINE L1 5275 6145 -21 4458 144 17 17 chr15 50093698 50094809 -51285712 - L1MA8 LINE L1 -219 6072 4963 416 229 25 0 chr15 50094883 50095001 -51285520 + L1M4 LINE L1 5042 5162 -984 2255 105 0 0 chr15 50096312 50096607 -51283914 - AluSx SINE Alu -17 295 1 273 248 0 74 chr15 50096617 50096738 -51283783 - HsTC2 DNA Tc2 -1141 757 646 266 233 0 0 chr15 50096883 50096943 -51283578 - HsTC2 DNA Tc2 -1619 279 220 386 297 25 0 chr15 50097112 50097230 -51283291 - L2 LINE L2 0 3313 3193 251 236 0 0 chr15 50097230 50097285 -51283236 - HsTC2 DNA Tc2 -1821 77 23 21 0 0 0 chr15 50098009 50098030 -51282491 + AT_rich Low_complexity Low_complexity 1 21 0 320 0 25 0 chr15 50098476 50098516 -51282005 + (CA)n Simple_repeat Simple_repeat 2 42 0 250 235 29 0 chr15 50098522 50098590 -51281931 + (TA)n Simple_repeat Simple_repeat 2 71 0 334 189 111 22 chr15 50099092 50099182 -51281339 + MIR SINE MIR 119 216 -46 398 300 58 58 chr15 50100145 50100385 -51280136 - MER102b DNA MER1_type -10 331 92 588 349 34 13 chr15 50101574 50101809 -51278712 - L2 LINE L2 0 3272 3033 278 268 56 0 chr15 50101898 50101969 -51278552 + L2 LINE L2 3198 3272 0 285 379 19 28 chr15 50101977 50102188 -51278333 - L2 LINE L2 -358 2956 2748 243 0 0 0 chr15 50102213 50102240 -51278281 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 200 328 94 0 chr15 50102681 50102745 -51277776 - L2 LINE L2 -565 2749 2680 445 314 54 32 chr15 50103047 50103232 -51277289 + MIR3 SINE MIR 18 206 -2 27 49 0 0 chr15 50105376 50105417 -51275104 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr15 50106467 50106495 -51274026 + AT_rich Low_complexity Low_complexity 1 28 0 186 301 11 65 chr15 50106595 50106688 -51273833 + MIR SINE MIR 57 144 -118 26 50 0 0 chr15 50107971 50108011 -51272510 + AT_rich Low_complexity Low_complexity 1 40 0 793 210 60 86 chr15 50108483 50108592 -51271929 + LTR48B LTR ERV1 385 495 -149 1963 108 44 80 chr15 50108592 50108979 -51271542 - THE1C LTR MaLR 0 375 3 793 210 60 86 chr15 50108979 50109136 -51271385 + LTR48B LTR ERV1 495 644 0 1053 287 36 25 chr15 50110449 50110808 -51269713 + MER20B DNA MER1_type 6 368 -415 390 189 61 1 chr15 50110935 50111109 -51269412 + MER20B DNA MER1_type 537 743 -40 335 363 96 6 chr15 50111687 50111844 -51268677 - L2 LINE L2 0 3272 3102 194 269 0 58 chr15 50111905 50111957 -51268564 + L2 LINE L2 3209 3257 -15 206 323 101 10 chr15 50113196 50113295 -51267226 - L2 LINE L2 -3 3310 3203 226 255 21 96 chr15 50114257 50114351 -51266170 + L2 LINE L2 3186 3272 0 779 293 11 5 chr15 50114381 50114572 -51265949 + MIR SINE MIR 2 193 -69 302 360 7 39 chr15 50114824 50114977 -51265544 + L2 LINE L2 2966 3113 -159 310 221 26 26 chr15 50115488 50115601 -51264920 - Charlie7 DNA MER1_type -57 2555 2443 526 63 25 0 chr15 50115603 50115682 -51264839 + (CA)n Simple_repeat Simple_repeat 2 82 0 565 299 149 10 chr15 50115720 50116008 -51264513 - Charlie7 DNA MER1_type -2135 477 150 261 290 93 9 chr15 50116063 50116170 -51264351 + L2 LINE L2 2720 2835 -479 320 321 69 8 chr15 50117285 50117416 -51263105 + MIR SINE MIR 7 145 -117 1564 180 0 0 chr15 50117484 50117739 -51262782 + AluJb SINE Alu 48 302 -10 25 51 0 0 chr15 50117801 50117840 -51262681 + AT_rich Low_complexity Low_complexity 1 39 0 937 189 0 75 chr15 50118537 50118738 -51261783 + AluJb SINE Alu 84 269 -43 546 187 0 9 chr15 50119250 50119357 -51261164 - FLAM_A SINE Alu -16 126 21 353 210 0 0 chr15 50120847 50120909 -51259612 + Tigger5 DNA MER2_type 2256 2317 -6 326 241 13 13 chr15 50120910 50120989 -51259532 - Tigger5 DNA MER2_type -2243 80 2 256 135 0 0 chr15 50121474 50121511 -51259010 - tRNA-Gln-CAA tRNA tRNA -37 38 2 187 240 164 48 chr15 50121823 50121927 -51258594 - MIR3 SINE MIR -29 179 64 1226 155 0 0 chr15 50122882 50123069 -51257452 + AluSg/x SINE Alu 81 267 -45 22 56 0 0 chr15 50123759 50123795 -51256726 + AT_rich Low_complexity Low_complexity 1 36 0 19277 166 18 6 chr15 50125023 50126521 -51254000 + L1PA12 LINE L1 1690 3170 -2998 189 0 0 0 chr15 50126521 50126542 -51253979 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 19277 166 18 6 chr15 50126542 50129332 -51251189 + L1PA12 LINE L1 3170 6023 -145 2021 114 0 0 chr15 50129842 50130106 -51250415 + AluSx SINE Alu 4 267 -45 258 366 9 9 chr15 50130208 50130320 -51250201 - MIR SINE MIR -65 143 32 747 320 87 41 chr15 50130671 50131180 -51249341 - L2 LINE L2 0 3313 2778 6739 132 19 16 chr15 50131780 50132972 -51247549 + L1MA2 LINE L1 4746 5949 -355 1802 161 7 11 chr15 50132972 50133296 -51247225 + AluJb SINE Alu 1 323 0 6739 132 19 16 chr15 50133296 50133653 -51246868 + L1MA2 LINE L1 5949 6304 0 481 254 11 79 chr15 50134141 50134330 -51246191 - MER5B DNA MER1_type -1 177 2 225 0 0 0 chr15 50134343 50134368 -51246153 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr15 50135072 50135100 -51245421 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr15 50135997 50136017 -51244504 + (CAA)n Simple_repeat Simple_repeat 2 21 0 494 305 63 27 chr15 50136133 50136356 -51244165 + MIR SINE MIR 10 240 -22 331 297 21 76 chr15 50136511 50136656 -51243865 - MIR SINE MIR -115 147 11 1614 271 62 75 chr15 50136692 50137642 -51242879 - L2 LINE L2 0 3313 2371 405 303 52 32 chr15 50137903 50138058 -51242463 - MIR3 SINE MIR -6 202 45 444 207 0 0 chr15 50139250 50139337 -51241184 - MIR3 SINE MIR -45 163 77 297 118 0 0 chr15 50139584 50139635 -51240886 + (TATG)n Simple_repeat Simple_repeat 2 52 0 217 191 0 0 chr15 50139666 50139713 -51240808 + L2 LINE L2 3267 3313 0 404 243 104 58 chr15 50141319 50141578 -51238943 + L2 LINE L2 3041 3311 -2 230 260 0 13 chr15 50141696 50141773 -51238748 + (TA)n Simple_repeat Simple_repeat 1 76 0 28 0 0 0 chr15 50142069 50142097 -51238424 + AT_rich Low_complexity Low_complexity 1 28 0 465 236 68 94 chr15 50142249 50142558 -51237963 + L1ME3A LINE L1 5851 6151 -19 264 232 0 0 chr15 50142960 50143029 -51237492 - L1M4 LINE L1 -2900 3246 3178 306 332 107 21 chr15 50143066 50143253 -51237268 - HAL1 LINE L1 -924 1583 1381 655 317 116 49 chr15 50143401 50143769 -51236752 - L1MEd LINE L1 -5042 1077 735 267 31 0 0 chr15 50143769 50143801 -51236720 + (TG)n Simple_repeat Simple_repeat 1 32 0 655 317 116 49 chr15 50143801 50144346 -51236175 - L1MEd LINE L1 -5384 735 103 677 293 40 7 chr15 50144469 50144766 -51235755 + L1ME LINE L1 5485 5791 -330 28 0 0 0 chr15 50144824 50144852 -51235669 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr15 50144879 50144914 -51235607 + AT_rich Low_complexity Low_complexity 1 35 0 4833 135 34 23 chr15 50144982 50146300 -51234221 + L1PB1 LINE L1 4821 6147 -4 6022 99 8 9 chr15 50146311 50147281 -51233240 + L1PA10 LINE L1 5175 6143 -25 255 31 0 0 chr15 50147281 50147313 -51233208 + (CTAAA)n Simple_repeat Simple_repeat 4 35 0 4679 119 54 84 chr15 50147641 50148607 -51231914 - L1PA16 LINE L1 -4 6162 5224 5943 75 5 3 chr15 50150588 50151366 -51229155 - LTR17 LTR ERV1 0 780 1 206 307 102 11 chr15 50151581 50151669 -51228852 - MIR SINE MIR -131 131 36 31 0 0 0 chr15 50151709 50151740 -51228781 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr15 50152375 50152418 -51228103 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr15 50153317 50153347 -51227174 + AT_rich Low_complexity Low_complexity 1 30 0 369 58 0 0 chr15 50153690 50153742 -51226779 + (GA)n Simple_repeat Simple_repeat 1 52 0 25 0 0 0 chr15 50154051 50154076 -51226445 + AT_rich Low_complexity Low_complexity 1 25 0 777 257 35 63 chr15 50154144 50154459 -51226062 + L1M4 LINE L1 101 406 -6136 308 169 0 0 chr15 50154454 50154513 -51226008 + L1M4 LINE L1 3333 3391 -3253 * 3703 244 15 14 chr15 50154515 50155551 -51224970 + L1M4 LINE L1 3781 4817 -1827 2254 134 69 27 chr15 50155552 50155956 -51224565 + MSTA LTR MaLR 1 421 -7 8864 181 17 10 chr15 50155959 50157599 -51222922 + MSTA-int LTR MaLR 1 1651 0 1950 160 70 13 chr15 50157599 50157987 -51222534 + MSTA LTR MaLR 1 410 -18 754 259 45 28 chr15 50158661 50158908 -51221613 + L1MDa LINE L1 62 312 -6228 1347 145 47 0 chr15 50158908 50159122 -51221399 + MER30 DNA MER1_type 1 224 -6 449 294 38 68 chr15 50159342 50159577 -51220944 + L1MDa LINE L1 306 533 -6007 1161 232 36 17 chr15 50160284 50160586 -51219935 + L1PA16 LINE L1 5858 6165 -1 855 131 0 0 chr15 50161126 50161256 -51219265 + L1PA16 LINE L1 6036 6165 -1 26 0 0 0 chr15 50161836 50161862 -51218659 + AT_rich Low_complexity Low_complexity 1 26 0 306 299 72 54 chr15 50162019 50162240 -51218281 - MIR SINE MIR -17 245 21 1245 206 112 9 chr15 50162254 50162594 -51217927 - L1MB8 LINE L1 0 6178 5804 186 43 0 0 chr15 50163973 50163996 -51216525 + (T)n Simple_repeat Simple_repeat 1 23 0 1878 106 23 0 chr15 50164117 50164373 -51216148 + AluSq SINE Alu 1 262 -51 256 337 31 41 chr15 50164623 50164721 -51215800 - L2 LINE L2 -27 3245 3149 674 130 165 0 chr15 50164746 50164861 -51215660 + AluJo SINE Alu 3 136 -176 281 209 0 22 chr15 50164874 50164965 -51215556 + (TTTA)n Simple_repeat Simple_repeat 4 92 0 34 0 0 0 chr15 50164969 50165003 -51215518 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr15 50166118 50166139 -51214382 + AT_rich Low_complexity Low_complexity 1 21 0 474 305 120 78 chr15 50166179 50167369 -51213152 - L1 LINE L1 -773 5373 4134 277 289 19 0 chr15 50167713 50167817 -51212704 + L1MC4a LINE L1 5824 5929 -1879 246 265 34 86 chr15 50168573 50168690 -51211831 + L3b LINE CR1 1198 1308 -275 180 111 0 0 chr15 50168696 50168723 -51211798 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 207 139 0 0 chr15 50169115 50169151 -51211370 + (TG)n Simple_repeat Simple_repeat 2 37 0 182 213 43 0 chr15 50169190 50169237 -51211284 - L3 LINE CR1 -1163 414 366 630 233 8 0 chr15 50171281 50171414 -51209107 + MER94 DNA DNA 1 134 0 498 242 37 37 chr15 50173030 50173191 -51207330 + MLT1I LTR MaLR 241 401 -8 234 283 17 17 chr15 50173308 50173368 -51207153 - MIR SINE MIR -133 75 16 937 249 4 9 chr15 50174518 50174743 -51205778 + MER58A DNA MER1_type 1 224 0 4546 158 39 18 chr15 50174961 50175838 -51204683 + L1MB1 LINE L1 5273 6167 -1 184 327 0 0 chr15 50176015 50176067 -51204454 + L2 LINE L2 2987 3038 -234 197 0 0 67 chr15 50176180 50176210 -51204311 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 714 338 94 25 chr15 50176229 50176900 -51203621 + L2 LINE L2 2599 3312 -1 2037 117 4 4 chr15 50177038 50177346 -51203175 - AluSx SINE Alu 0 310 3 461 83 0 0 chr15 50177372 50177432 -51203089 + U2 snRNA snRNA 1 60 -128 290 309 29 86 chr15 50178611 50178750 -51201771 - L2 LINE L2 -5 3267 3137 23 0 0 0 chr15 50179277 50179300 -51201221 + AT_rich Low_complexity Low_complexity 1 23 0 2259 119 0 0 chr15 50180344 50180656 -51199865 + AluSx SINE Alu 1 312 0 2153 102 28 0 chr15 50181103 50181386 -51199135 - AluSg SINE Alu -19 291 1 2343 103 0 0 chr15 50182378 50182689 -51197832 + AluY SINE Alu 1 311 0 31 68 0 0 chr15 50185408 50185467 -51195054 + AT_rich Low_complexity Low_complexity 1 59 0 32 86 0 0 chr15 50185584 50185665 -51194856 + AT_rich Low_complexity Low_complexity 1 81 0 746 246 37 21 chr15 50186383 50186574 -51193947 + MER58A DNA MER1_type 7 200 -24 1878 179 99 8 chr15 50186585 50186970 -51193551 - MSTB1 LTR MaLR -12 420 1 693 187 26 0 chr15 50187012 50187167 -51193354 - MER3 DNA MER1_type 0 2585 2427 383 244 0 0 chr15 50187162 50187240 -51193281 - MER3 DNA MER1_type -92 117 40 * 208 370 29 59 chr15 50187494 50187767 -51192754 - L3b LINE CR1 -205 1378 1114 1039 247 4 20 chr15 50188179 50188430 -51192091 + AluJo SINE Alu 4 250 -62 243 0 0 0 chr15 50188485 50188512 -51192009 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 203 233 0 0 chr15 50188661 50188704 -51191817 + L3 LINE CR1 995 1037 -540 243 317 97 9 chr15 50190046 50190273 -51190248 + L1ME LINE L1 5616 5862 -259 1910 152 0 7 chr15 50192463 50192760 -51187761 + AluJb SINE Alu 1 295 -17 225 268 24 114 chr15 50193328 50193451 -51187070 - L2 LINE L2 -1 3271 3160 16013 48 0 7 chr15 50193970 50196464 -51184057 - L1PA3 LINE L1 -215 5940 3475 1035 220 110 9 chr15 50196606 50196933 -51183588 + L1MC3 LINE L1 7039 7398 -387 * 1289 164 4 28 chr15 50196920 50197189 -51183332 + L1MC1 LINE L1 5672 5824 -332 418 324 0 0 chr15 50198062 50198235 -51182286 + T-rich Low_complexity Low_complexity 1 173 0 757 233 0 12 chr15 50198339 50198502 -51182019 + LTR41 LTR ERVL 1 161 -612 1712 158 4 11 chr15 50198536 50198815 -51181706 + AluJb SINE Alu 23 299 -13 722 129 41 0 chr15 50198818 50198965 -51181556 + GA-rich Low_complexity Low_complexity 4 156 0 950 262 82 77 chr15 50199060 50199488 -51181033 + LTR41 LTR ERVL 337 766 -7 33 66 0 0 chr15 50200036 50200097 -51180424 + AT_rich Low_complexity Low_complexity 1 61 0 1031 210 39 9 chr15 50200447 50200676 -51179845 + MIR SINE MIR 6 241 -21 378 245 170 13 chr15 50201179 50201338 -51179183 + L2 LINE L2 2990 3173 -140 312 240 25 0 chr15 50201784 50201905 -51178616 + GA-rich Low_complexity Low_complexity 2 125 0 193 276 13 40 chr15 50202126 50202202 -51178319 - L2 LINE L2 -1039 2275 2202 1632 160 40 14 chr15 50202743 50203044 -51177477 + AluJb SINE Alu 1 308 0 2289 91 0 3 chr15 50203598 50203895 -51176626 + AluSq SINE Alu 1 296 -17 2031 85 4 4 chr15 50204988 50205247 -51175274 + AluSc SINE Alu 36 294 -15 24 0 0 0 chr15 50205481 50205505 -51175016 + AT_rich Low_complexity Low_complexity 1 24 0 2041 212 85 30 chr15 50206190 50206719 -51173802 + MLT1E2 LTR MaLR 69 626 0 2317 78 7 0 chr15 50206813 50207106 -51173415 - AluY SINE Alu -16 295 1 2095 114 99 6 chr15 50207329 50207662 -51172859 + THE1B LTR MaLR 1 364 0 224 213 0 0 chr15 50207694 50207741 -51172780 + (CAT)n Simple_repeat Simple_repeat 3 49 0 3084 158 6 9 chr15 50208682 50209212 -51171309 + L1MB3 LINE L1 5634 6161 -22 712 256 87 40 chr15 50209667 50209988 -51170533 - MER46C DNA MER2_type -1 337 2 1307 143 390 3 chr15 50212434 50212742 -51167779 - THE1C-int LTR MaLR -1150 430 4 1617 189 48 38 chr15 50212745 50213116 -51167405 - THE1C LTR MaLR 0 375 1 1283 171 27 0 chr15 50213116 50213373 -51167148 + L1MA4A LINE L1 6035 6298 -5 418 242 59 20 chr15 50213795 50213948 -51166573 - Charlie4 DNA MER1_type 0 1961 1803 42185 38 21 1 chr15 50214087 50220117 -51160404 + L1PA3 LINE L1 4 6155 0 3478 187 29 43 chr15 50220162 50220958 -51159563 - L1MB5 LINE L1 -3 6171 5387 1735 182 0 4 chr15 50220958 50221238 -51159283 - AluJb SINE Alu -33 279 1 620 264 25 0 chr15 50221253 50221450 -51159071 - L1MB5 LINE L1 -830 5316 5115 441 95 0 0 chr15 50221485 50221548 -51158973 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 209 362 78 21 chr15 50221567 50221708 -51158813 - MIR SINE MIR -51 211 63 518 321 0 0 chr15 50221802 50221936 -51158585 - L2 LINE L2 0 3313 3180 224 350 29 19 chr15 50222363 50222466 -51158055 - MIR SINE MIR -149 113 10 258 239 79 14 chr15 50225010 50225146 -51155375 + MIR3 SINE MIR 14 154 -63 1087 207 9 14 chr15 50225251 50225473 -51155048 + MER58A DNA MER1_type 1 221 -3 229 274 94 43 chr15 50227641 50227758 -51152763 + LTR33 LTR ERVL 37 159 -362 832 205 13 64 chr15 50227858 50228092 -51152429 + LTR33 LTR ERVL 296 517 -4 1503 50 0 6 chr15 50228192 50228373 -51152148 - AluY SINE Alu -19 292 113 537 259 135 10 chr15 50228811 50229004 -51151517 - MIR SINE MIR 0 262 46 313 272 88 32 chr15 50229110 50229235 -51151286 + MIR SINE MIR 61 192 -70 1402 185 29 22 chr15 50231902 50232178 -51148343 + AluJo SINE Alu 2 279 -33 303 28 0 0 chr15 50232200 50232236 -51148285 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr15 50233513 50233534 -51146987 + AT_rich Low_complexity Low_complexity 1 21 0 956 298 109 65 chr15 50233567 50234785 -51145736 - L1M4 LINE L1 -766 5380 4109 277 289 19 0 chr15 50235108 50235212 -51145309 + L1MC4a LINE L1 5824 5929 -1879 246 265 34 86 chr15 50235968 50236085 -51144436 + L3b LINE CR1 1198 1308 -275 180 111 0 0 chr15 50236091 50236118 -51144403 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 182 213 43 0 chr15 50236571 50236618 -51143903 - L3 LINE CR1 -1163 414 366 630 233 8 0 chr15 50238664 50238797 -51141724 + MER94 DNA DNA 1 134 0 496 242 37 37 chr15 50240413 50240574 -51139947 + MLT1I LTR MaLR 241 401 -8 207 279 16 33 chr15 50240691 50240752 -51139769 - MIR SINE MIR -133 75 16 1192 15 0 15 chr15 50241679 50241816 -51138705 + AluYa5 SINE Alu 1 135 -176 980 240 4 9 chr15 50242039 50242264 -51138257 + MER58A DNA MER1_type 1 224 0 4516 160 39 18 chr15 50242482 50243359 -51137162 + L1MB1 LINE L1 5273 6167 -1 197 0 0 67 chr15 50243702 50243732 -51136789 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 207 0 0 0 chr15 50243812 50243835 -51136686 + (T)n Simple_repeat Simple_repeat 1 23 0 713 333 101 19 chr15 50243835 50244429 -51136092 + L2 LINE L2 2671 3312 -1 2037 117 4 4 chr15 50244567 50244875 -51135646 - AluSx SINE Alu 0 310 3 461 83 0 0 chr15 50244901 50244961 -51135560 + U2 snRNA snRNA 1 60 -128 290 309 29 86 chr15 50246140 50246279 -51134242 - L2 LINE L2 -5 3267 3137 23 0 0 0 chr15 50246806 50246829 -51133692 + AT_rich Low_complexity Low_complexity 1 23 0 2186 128 0 0 chr15 50247873 50248179 -51132342 + AluSx SINE Alu 1 306 -6 2133 109 28 0 chr15 50248627 50248912 -51131609 - AluSx SINE Alu -19 293 1 2212 51 44 4 chr15 50250313 50250587 -51129934 - AluY SINE Alu -15 296 12 227 229 36 60 chr15 50250646 50250729 -51129792 + L2 LINE L2 3229 3309 -4 454 222 40 0 chr15 50250818 50250917 -51129604 + MIR SINE MIR 98 200 -62 332 310 0 20 chr15 50251061 50251161 -51129360 + L2 LINE L2 3182 3279 -34 224 204 140 65 chr15 50251635 50251728 -51128793 - MIR3 SINE MIR -3 205 106 2072 118 10 7 chr15 50251734 50252030 -51128491 - AluSx SINE Alu -15 297 1 217 277 0 0 chr15 50252030 50252077 -51128444 + L3 LINE CR1 1524 1570 -7 2532 50 3 0 chr15 50253697 50253997 -51126524 + AluY SINE Alu 1 301 -10 309 282 24 0 chr15 50254652 50254737 -51125784 + L2 LINE L2 3180 3266 -6 295 341 68 0 chr15 50255129 50255261 -51125260 + MIR SINE MIR 110 250 -12 625 117 51 44 chr15 50255519 50255656 -51124865 + MER53 DNA DNA 1 138 -51 301 143 86 0 chr15 50255650 50255720 -51124801 + MER53 DNA DNA 98 173 -16 * 377 303 28 7 chr15 50255760 50255905 -51124616 - MIR3 SINE MIR -31 177 30 367 258 22 22 chr15 50256507 50256596 -51123925 + MIR SINE MIR 3 91 -171 209 250 0 0 chr15 50256897 50256941 -51123580 - MIR SINE MIR -92 116 73 277 277 53 11 chr15 50258059 50258153 -51122368 - L2 LINE L2 -8 3305 3208 297 266 89 40 chr15 50258891 50259015 -51121506 - L2 LINE L2 -4 3309 3180 13586 125 29 69 chr15 50259146 50261132 -51119389 + Tigger1 DNA MER2_type 24 2020 -398 728 175 24 16 chr15 50261132 50261258 -51119263 + FLAM_A SINE Alu 2 128 -14 13586 125 29 69 chr15 50261258 50261642 -51118879 + Tigger1 DNA MER2_type 2020 2418 0 532 245 172 20 chr15 50261783 50261987 -51118534 + MIR SINE MIR 27 261 -1 2417 176 17 11 chr15 50262237 50262698 -51117823 + MLT1C LTR MaLR 4 467 0 230 291 0 0 chr15 50263765 50263820 -51116701 - L2 LINE L2 -8 3264 3210 258 81 0 0 chr15 50264056 50264093 -51116428 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 28 29 0 0 chr15 50265389 50265424 -51115097 + AT_rich Low_complexity Low_complexity 1 35 0 284 353 68 34 chr15 50265587 50265822 -51114699 - L2 LINE L2 -1 3271 3029 362 266 84 59 chr15 50266048 50266086 -51114435 - L3 LINE CR1 -578 999 963 2103 110 73 17 chr15 50266086 50266441 -51114080 + THE1C LTR MaLR 1 375 0 362 266 84 59 chr15 50266441 50266605 -51113916 - L3 LINE CR1 -614 963 792 398 326 137 17 chr15 50266650 50266883 -51113638 - MIR SINE MIR 0 262 2 2062 124 0 13 chr15 50267343 50267669 -51112852 + AluSx SINE Alu 1 312 0 270 0 0 0 chr15 50267980 50268010 -51112511 + (TC)n Simple_repeat Simple_repeat 1 30 0 1596 171 31 27 chr15 50268010 50268303 -51112218 - AluJb SINE Alu -18 294 1 21 0 0 0 chr15 50268378 50268399 -51112122 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr15 50268769 50268800 -51111721 + GC_rich Low_complexity Low_complexity 1 31 0 36 23 0 0 chr15 50269183 50269226 -51111295 + AT_rich Low_complexity Low_complexity 1 43 0 254 29 29 0 chr15 50269707 50269742 -51110779 + (CCCCG)n Simple_repeat Simple_repeat 5 40 0 210 71 0 0 chr15 50269838 50269866 -51110655 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 4902 94 15 17 chr15 50270031 50270785 -51109736 - L1MA3 LINE L1 0 6305 5554 2518 108 0 24 chr15 50270786 50270843 -51109678 + L1M1 LINE L1 5275 5332 -972 1925 180 0 0 chr15 50270843 50271149 -51109372 + AluSx SINE Alu 1 306 -6 2518 108 0 24 chr15 50271149 50271506 -51109015 + L1M1 LINE L1 5332 5679 -625 1579 185 26 13 chr15 50271550 50271853 -51108668 + AluJo SINE Alu 6 312 0 246 222 202 20 chr15 50272377 50272476 -51108045 + L2 LINE L2 3104 3220 -93 212 269 51 26 chr15 50272722 50272800 -51107721 + MIR SINE MIR 45 124 -84 422 221 171 0 chr15 50272802 50272960 -51107561 - ORSL DNA AcHobo 0 275 91 2307 219 11 48 chr15 50272961 50273622 -51106899 + MER92B LTR ERV1 1 636 0 248 217 96 12 chr15 50273625 50273708 -51106813 - ORSL DNA AcHobo -185 90 1 204 232 71 18 chr15 50273708 50273764 -51106757 + MIR3 SINE MIR 119 177 -31 620 171 0 0 chr15 50274220 50274325 -51106196 + U6 snRNA snRNA 1 105 -2 25 31 0 0 chr15 50274395 50274427 -51106094 + AT_rich Low_complexity Low_complexity 1 32 0 265 257 62 9 chr15 50274558 50274671 -51105850 - L1ME4a LINE L1 -219 5902 5784 353 280 67 7 chr15 50274748 50274898 -51105623 - L1ME4a LINE L1 -456 5665 5507 223 254 104 15 chr15 50274940 50275007 -51105514 + L2 LINE L2 3127 3199 -73 1678 237 102 29 chr15 50276339 50276866 -51103655 + MLT1F1 LTR MaLR 2 567 0 553 272 83 58 chr15 50277210 50277523 -51102998 + LTR67 LTR ERVL 237 557 0 233 337 47 23 chr15 50277528 50277614 -51102907 - MIR SINE MIR -117 145 58 607 307 86 54 chr15 50278125 50278532 -51101989 + HAL1 LINE L1 534 953 -1554 4738 161 34 13 chr15 50278568 50279403 -51101118 + L1MA8 LINE L1 5184 6040 -251 4325 110 13 0 chr15 50279403 50280030 -51100491 - MER41B LTR ERV1 0 635 1 4738 161 34 13 chr15 50280030 50280284 -51100237 + L1MA8 LINE L1 6040 6287 -4 1985 242 70 23 chr15 50280296 50280531 -51099990 + L1ME1 LINE L1 4623 4846 -1320 469 16 0 0 chr15 50280531 50280593 -51099928 - L1PA3 LINE L1 0 6155 6094 1985 242 70 23 chr15 50280593 50281581 -51098940 + L1ME1 LINE L1 4846 5908 -258 347 281 9 0 chr15 50281608 50281722 -51098799 + L1ME1 LINE L1 6030 6144 -22 388 35 35 0 chr15 50282283 50282341 -51098180 + (TC)n Simple_repeat Simple_repeat 1 60 0 870 278 104 35 chr15 50282740 50283259 -51097262 + HAL1 LINE L1 1397 1951 -556 2306 96 0 0 chr15 50283431 50283733 -51096788 + AluSx SINE Alu 1 302 -10 219 69 0 0 chr15 50283735 50283764 -51096757 + (TA)n Simple_repeat Simple_repeat 2 30 0 659 280 102 36 chr15 50283804 50284168 -51096353 + LTR67 LTR ERVL 3 390 -167 235 210 16 0 chr15 50284205 50284267 -51096254 + LTR67 LTR ERVL 480 542 -15 241 329 92 24 chr15 50284504 50284668 -51095853 - MIR3 SINE MIR -31 177 3 355 322 41 20 chr15 50286660 50286806 -51093715 + L2 LINE L2 3164 3312 -1 23 33 0 0 chr15 50286945 50286975 -51093546 + AT_rich Low_complexity Low_complexity 1 30 0 202 329 27 0 chr15 50286989 50287062 -51093459 + CT-rich Low_complexity Low_complexity 3 77 0 * 213 250 0 0 chr15 50287023 50287071 -51093450 + T-rich Low_complexity Low_complexity 1 48 0 407 204 12 1 chr15 50287387 50287486 -51093035 + MLT1H1 LTR MaLR 1 103 -465 323 164 0 0 chr15 50287689 50287756 -51092765 + L1MA3 LINE L1 6239 6305 0 226 247 0 27 chr15 50287764 50287837 -51092684 + MLT-int LTR MaLR 22 92 -1643 216 306 56 28 chr15 50287879 50287951 -51092570 + L2 LINE L2 3199 3272 0 1293 134 5 0 chr15 50288030 50288232 -51092289 - THE1B LTR MaLR 0 364 162 7528 129 11 39 chr15 50288232 50289537 -51090984 - THE1B-int LTR MaLR -312 1268 1 2589 89 3 16 chr15 50289537 50289607 -51090914 - THE1B LTR MaLR 0 364 295 2351 130 5 19 chr15 50289607 50289976 -51090545 + THE1B LTR MaLR 1 364 0 2589 89 3 16 chr15 50289976 50290274 -51090247 - THE1B LTR MaLR -69 295 1 1610 112 23 8 chr15 50290274 50290532 -51089989 - THE1C LTR MaLR -113 262 1 9318 129 37 38 chr15 50290532 50292112 -51088409 - THE1C-int LTR MaLR 0 1580 3 2780 93 3 5 chr15 50292114 50292490 -51088031 - THE1C LTR MaLR 0 375 1 359 336 35 13 chr15 50292653 50292882 -51087639 + L1ME LINE L1 5482 5715 -406 1674 181 25 3 chr15 50292920 50293246 -51087275 - L1PA16 LINE L1 -24 6142 5810 21 0 0 0 chr15 50293259 50293280 -51087241 + AT_rich Low_complexity Low_complexity 1 21 0 342 336 83 31 chr15 50293637 50293778 -51086743 - L2 LINE L2 -469 2845 2713 2271 133 14 8 chr15 50293778 50294140 -51086381 - THE1B LTR MaLR 0 364 1 9984 119 47 3 chr15 50294140 50295653 -51084868 - THE1B-int LTR MaLR 0 1580 1 2676 113 3 0 chr15 50295653 50296016 -51084505 - THE1B LTR MaLR 0 364 1 342 336 83 31 chr15 50296016 50296101 -51084420 - L2 LINE L2 -600 2714 2605 463 314 41 35 chr15 50296336 50296532 -51083989 - MIR SINE MIR -58 150 6 748 301 35 13 chr15 50296662 50296891 -51083630 + MIR SINE MIR 5 238 -24 342 199 22 88 chr15 50296900 50297002 -51083519 - MIR SINE MIR -63 145 61 189 0 0 0 chr15 50297154 50297175 -51083346 + (TAA)n Simple_repeat Simple_repeat 3 23 0 183 250 191 15 chr15 50297834 50297902 -51082619 - L2 LINE L2 -2 3311 3232 191 341 65 72 chr15 50299191 50299484 -51081037 - L2 LINE L2 -6 3266 2976 751 62 0 54 chr15 50299490 50299602 -51080919 + AluY SINE Alu 206 311 0 637 254 142 37 chr15 50300855 50301334 -51079187 - MLT1F1 LTR MaLR -9 533 11 181 269 0 97 chr15 50301395 50301488 -51079033 - L2 LINE L2 -1876 1438 1355 419 262 171 37 chr15 50301557 50301631 -51078890 + MER5A DNA MER1_type 4 67 -122 4535 70 10 3 chr15 50301631 50302214 -51078307 - LTR14C LTR ERVK 0 587 1 419 262 171 37 chr15 50302214 50302303 -51078218 + MER5A DNA MER1_type 67 189 0 1358 175 3 95 chr15 50302568 50302883 -51077638 + AluJo SINE Alu 1 286 -26 1012 262 17 60 chr15 50303290 50303809 -51076712 + L1MC5 LINE L1 6737 7233 -728 279 264 115 16 chr15 50303899 50304081 -51076440 + L1MC5 LINE L1 7235 7434 -527 2006 156 3 10 chr15 50304107 50304421 -51076100 - AluJb SINE Alu 0 312 1 1612 261 33 65 chr15 50304519 50305212 -51075309 + L1MCb LINE L1 3 673 -5372 3176 273 32 27 chr15 50305260 50307343 -51073178 + L1MCb LINE L1 1710 3761 -2803 510 171 111 0 chr15 50307362 50307441 -51073080 + L1MA9 LINE L1 18 115 -7450 248 0 31 0 chr15 50307441 50307473 -51073048 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 510 171 111 0 chr15 50307473 50307510 -51073011 + L1MA9 LINE L1 115 147 -7418 1475 227 26 26 chr15 50307514 50307901 -51072620 + L1MA9 LINE L1 364 750 -6815 4988 184 18 1 chr15 50307905 50308967 -51071554 + L1MA9 LINE L1 4227 5306 -2259 482 127 0 0 chr15 50309081 50309160 -51071361 - L1MA1 LINE L1 -105 6197 6119 2431 137 2 14 chr15 50309171 50309601 -51070920 + L1MCb LINE L1 4313 4737 -1827 1707 78 30 7 chr15 50309600 50309869 -51070652 + L1MA1 LINE L1 5923 6197 -105 * 2251 245 46 39 chr15 50309867 50310773 -51069748 + L1M4 LINE L1 3328 4240 -1906 4937 141 22 13 chr15 50310888 50311810 -51068711 + L1MA9 LINE L1 6801 7730 -1 332 250 76 62 chr15 50311932 50312076 -51068445 + MLT1D LTR MaLR 265 410 -95 1793 131 3 62 chr15 50312200 50312491 -51068030 - AluSp SINE Alu -39 274 1 5051 179 38 44 chr15 50312492 50313610 -51066911 + L1MC3 LINE L1 5790 6900 -885 1057 235 103 62 chr15 50313610 50313772 -51066749 + MLT1D LTR MaLR 1 155 -350 2091 134 3 0 chr15 50313772 50314079 -51066442 - AluSx SINE Alu -4 308 1 1057 235 103 62 chr15 50314079 50314401 -51066120 + MLT1D LTR MaLR 155 505 0 1285 126 198 159 chr15 50314401 50314601 -51065920 + L1MC3 LINE L1 6896 7087 -698 259 263 26 13 chr15 50314601 50314677 -51065844 + MLT1F1 LTR MaLR 35 111 -456 1285 126 198 159 chr15 50314677 50314885 -51065636 + L1MC3 LINE L1 7087 7398 -387 * 1289 164 4 28 chr15 50314872 50315141 -51065380 + L1MC1 LINE L1 5672 5824 -332 7609 32 0 0 chr15 50315845 50317194 -51063327 + L1PA3 LINE L1 4806 6154 -1 25 0 0 0 chr15 50317195 50317220 -51063301 + AT_rich Low_complexity Low_complexity 1 25 0 591 146 27 27 chr15 50317238 50317348 -51063173 + L1MC3 LINE L1 7393 7502 -283 393 342 115 33 chr15 50317545 50317875 -51062646 - L1ME LINE L1 -5520 550 194 281 303 15 0 chr15 50317925 50317991 -51062530 - MIR SINE MIR -184 78 12 376 340 7 43 chr15 50318175 50318316 -51062205 + MIR3 SINE MIR 20 155 -53 266 274 0 27 chr15 50318621 50318694 -51061827 + LTR67 LTR ERVL 95 165 -392 271 330 120 31 chr15 50319321 50319512 -51061009 + L2 LINE L2 2293 2500 -814 461 293 33 33 chr15 50319811 50319992 -51060529 + MIR SINE MIR 58 238 -24 277 239 18 62 chr15 50320475 50320588 -51059933 + L1MC/D LINE L1 5650 5757 -2051 2114 76 3 40 chr15 50320882 50321183 -51059338 - AluY SINE Alu 0 311 22 22 0 0 0 chr15 50321186 50321208 -51059313 + AT_rich Low_complexity Low_complexity 1 22 0 2006 130 3 3 chr15 50321846 50322138 -51058383 - AluSx SINE Alu -20 292 1 564 300 108 9 chr15 50322670 50322702 -51057819 - MIR SINE MIR 0 262 235 186 43 0 0 chr15 50322702 50322725 -51057796 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 423 0 0 0 chr15 50322724 50322771 -51057750 + (TA)n Simple_repeat Simple_repeat 2 48 0 564 300 108 9 chr15 50322725 50322961 -51057560 - MIR SINE MIR -27 235 18 326 259 45 36 chr15 50323622 50323734 -51056787 - MIR SINE MIR -72 190 78 2514 51 0 0 chr15 50323816 50324108 -51056413 - AluY SINE Alu -19 292 1 691 266 27 76 chr15 50324575 50324838 -51055683 + MIR SINE MIR 3 252 -10 237 65 0 0 chr15 50325041 50325072 -51055449 + (CAT)n Simple_repeat Simple_repeat 3 33 0 423 237 88 0 chr15 50326747 50326861 -51053660 + L1MC4 LINE L1 7914 8037 -5 1986 114 4 0 chr15 50328676 50328948 -51051573 + AluSg SINE Alu 1 273 -37 630 26 0 0 chr15 50329441 50329517 -51051004 + (TTTTA)n Simple_repeat Simple_repeat 2 77 0 2093 100 0 24 chr15 50329521 50329812 -51050709 - AluSx SINE Alu -28 284 1 207 0 0 0 chr15 50330236 50330259 -51050262 + (TG)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr15 50330418 50330439 -51050082 + AT_rich Low_complexity Low_complexity 1 21 0 189 427 0 0 chr15 50331492 50331588 -51048933 + MIR3 SINE MIR 108 203 -5 664 209 65 39 chr15 50331732 50331885 -51048636 + FRAM SINE Alu 2 158 -18 21 36 0 0 chr15 50333254 50333282 -51047239 + AT_rich Low_complexity Low_complexity 1 28 0 1046 177 22 80 chr15 50333609 50333835 -51046686 + MER20 DNA MER1_type 2 214 -5 257 333 133 17 chr15 50334161 50334281 -51046240 - MER5B DNA MER1_type -4 174 41 321 293 70 83 chr15 50334316 50334473 -51046048 - MER5B DNA MER1_type 0 178 24 61 88 0 0 chr15 50334776 50334935 -51045586 + AT_rich Low_complexity Low_complexity 1 159 0 306 376 59 27 chr15 50335094 50335280 -51045241 - HAL1 LINE L1 -2315 192 1 219 328 166 15 chr15 50335287 50335619 -51044902 + L2 LINE L2 1993 2374 -940 738 294 0 0 chr15 50335718 50335898 -51044623 + MER5A DNA MER1_type 9 188 -1 25 51 0 0 chr15 50336012 50336051 -51044470 + AT_rich Low_complexity Low_complexity 1 39 0 23 78 0 0 chr15 50336155 50336206 -51044315 + AT_rich Low_complexity Low_complexity 1 51 0 461 290 83 44 chr15 50336497 50336904 -51043617 - L1MEc LINE L1 -4641 1755 1333 309 0 98 0 chr15 50338067 50338118 -51042403 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1943 112 0 4 chr15 50338123 50338390 -51042131 - AluSx SINE Alu -46 266 1 180 356 100 0 chr15 50338702 50338792 -51041729 + MIR3 SINE MIR 97 195 -13 3608 143 35 20 chr15 50339390 50339643 -51040878 + L1MA9 LINE L1 5536 5784 -528 1708 145 31 72 chr15 50339643 50340002 -51040519 + MER2 DNA MER2_type 1 344 0 3608 143 35 20 chr15 50340002 50340412 -51040109 + L1MA9 LINE L1 5784 6209 -103 316 137 20 0 chr15 50340412 50340463 -51040058 - MSTA LTR MaLR 0 428 377 1566 124 159 19 chr15 50340623 50340938 -51039583 - MSTA LTR MaLR -69 359 1 465 172 10 0 chr15 50340939 50341038 -51039483 + L1MA9 LINE L1 6206 6305 -7 4696 162 17 4 chr15 50341200 50342076 -51038445 + L1MC1 LINE L1 5185 6072 -261 1343 161 9 0 chr15 50342076 50342287 -51038234 + AluSg/x SINE Alu 82 294 -16 416 118 3 20 chr15 50342287 50342368 -51038153 + L1MC1 LINE L1 6068 6126 -207 321 154 0 0 chr15 50342381 50342433 -51038088 + L1MC4 LINE L1 6652 6703 -1339 229 95 0 0 chr15 50342449 50342491 -51038030 - LTR66 LTR ERVL -171 439 398 593 136 13 129 chr15 50342491 50342646 -51037875 + L1MC1 LINE L1 6195 6331 -2 1688 209 0 7 chr15 50342755 50343052 -51037469 + AluJb SINE Alu 1 295 -17 1098 113 0 0 chr15 50343237 50343378 -51037143 + AluSq/x SINE Alu 10 150 -163 456 114 0 25 chr15 50343378 50343457 -51037064 + Alu SINE Alu 233 309 -1 2271 125 11 19 chr15 50344251 50344618 -51035903 - THE1B LTR MaLR 0 364 1 444 275 7 0 chr15 50344664 50344785 -51035736 - MIR SINE MIR -53 155 31 227 339 29 98 chr15 50345224 50345634 -51034887 + L2 LINE L2 2365 2746 -568 2233 175 14 34 chr15 50345923 50346541 -51033980 + L1MB3 LINE L1 5393 5966 -217 225 279 16 16 chr15 50346561 50346622 -51033899 + L2 LINE L2 3126 3186 -86 729 260 59 0 chr15 50347598 50347802 -51032719 - MER20 DNA MER1_type -2 217 2 183 381 14 54 chr15 50347921 50348068 -51032453 + L2 LINE L2 3132 3272 0 26 0 0 0 chr15 50349893 50349919 -51030602 + AT_rich Low_complexity Low_complexity 1 26 0 229 355 159 0 chr15 50350752 50350890 -51029631 + L1MEd LINE L1 126 285 -5834 33 0 0 0 chr15 50351012 50351045 -51029476 + AT_rich Low_complexity Low_complexity 1 33 0 28 29 0 0 chr15 50351084 50351119 -51029402 + AT_rich Low_complexity Low_complexity 1 35 0 1786 151 11 0 chr15 50351216 50351487 -51029034 + AluSx SINE Alu 1 274 -38 317 202 170 0 chr15 50351494 50351588 -51028933 + L1M4 LINE L1 5477 5586 -598 * 571 195 14 87 chr15 50351583 50351815 -51028706 + L1MA10 LINE L1 5952 6329 -5 710 243 82 127 chr15 50351832 50352384 -51028137 + L1MEd LINE L1 622 1148 -4971 1408 245 90 26 chr15 50353041 50353204 -51027317 + L1MC4a LINE L1 6443 6594 -1214 405 0 0 0 chr15 50353204 50353249 -51027272 + (CA)n Simple_repeat Simple_repeat 2 46 0 1408 245 90 26 chr15 50353249 50353550 -51026971 + L1MC4a LINE L1 6594 6937 -871 418 298 92 51 chr15 50353555 50354751 -51025770 + L1MEd LINE L1 2136 3380 -2749 1525 140 7 55 chr15 50354779 50355099 -51025422 - AluSq SINE Alu 0 313 16 2269 43 43 4 chr15 50355810 50356087 -51024434 - AluY SINE Alu -12 299 12 193 276 13 40 chr15 50356637 50356713 -51023808 + L2 LINE L2 2202 2275 -1039 1402 119 78 11 chr15 50356924 50357192 -51023329 - AluY SINE Alu -14 297 12 188 253 36 60 chr15 50357251 50357334 -51023187 + L2 LINE L2 3229 3309 -4 454 222 40 0 chr15 50357423 50357522 -51022999 + MIR SINE MIR 98 200 -62 318 320 0 20 chr15 50357666 50357766 -51022755 + L2 LINE L2 3182 3279 -34 312 240 25 0 chr15 50358039 50358160 -51022361 + CT-rich Low_complexity Low_complexity 2 125 0 294 252 176 19 chr15 50358606 50358765 -51021756 - L2 LINE L2 -140 3173 2990 224 204 140 65 chr15 50359887 50359980 -51020541 - MIR3 SINE MIR -3 205 106 2072 118 10 7 chr15 50359986 50360282 -51020239 - AluSx SINE Alu -15 297 1 217 277 0 0 chr15 50360282 50360329 -51020192 + L3 LINE CR1 1524 1570 -7 548 188 0 21 chr15 50361874 50361970 -51018551 + FRAM SINE Alu 21 114 -62 315 0 0 0 chr15 50362025 50362060 -51018461 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 203 233 0 0 chr15 50362209 50362252 -51018269 + L3 LINE CR1 995 1037 -540 6292 29 0 0 chr15 50362855 50363619 -51016902 - L1HS LINE L1 -2303 3843 3080 * 13285 15 0 0 chr15 50363618 50365939 -51014582 + L1HS LINE L1 3835 6155 0 252 307 111 13 chr15 50366694 50366919 -51013602 + L1ME LINE L1 5616 5862 -259 1926 148 0 7 chr15 50369108 50369405 -51011116 + AluJb SINE Alu 1 295 -17 237 260 24 114 chr15 50369973 50370096 -51010425 - L2 LINE L2 -1 3271 3160 68 91 0 0 chr15 50370455 50370587 -51009934 + AT_rich Low_complexity Low_complexity 1 132 0 37 127 0 0 chr15 50370631 50370781 -51009740 + AT_rich Low_complexity Low_complexity 1 150 0 4086 31 90 4 chr15 50371556 50372068 -51008453 + LTR6B LTR ERV1 3 558 0 454 331 74 35 chr15 50372227 50372565 -51007956 + L2 LINE L2 2550 2900 -414 2037 100 18 4 chr15 50373150 50373430 -51007091 - AluSq SINE Alu -29 284 1 1034 151 73 19 chr15 50373452 50373658 -51006863 - L1PA16 LINE L1 -10 6156 5940 861 157 0 8 chr15 50374223 50374357 -51006164 + AluSg/x SINE Alu 134 266 -44 244 119 95 0 chr15 50374359 50374401 -51006120 + AluSg/x SINE Alu 241 286 -16 858 164 0 8 chr15 50374541 50374675 -51005846 + FLAM_C SINE Alu 1 133 0 1982 157 3 3 chr15 50374724 50375036 -51005485 - AluSx SINE Alu 0 312 1 1826 159 14 3 chr15 50375046 50375342 -51005179 - AluJo SINE Alu -13 299 1 252 0 0 0 chr15 50375390 50375418 -51005103 + (CTTG)n Simple_repeat Simple_repeat 1 28 0 4104 173 59 31 chr15 50375513 50376417 -51004104 - L1MA10 LINE L1 -38 6296 5368 1360 179 143 48 chr15 50376414 50376799 -51003722 + L1 LINE L1 4878 5312 -834 * 246 32 0 0 chr15 50376799 50376830 -51003691 + (CAA)n Simple_repeat Simple_repeat 1 31 0 1360 179 143 48 chr15 50376830 50376884 -51003637 + L1 LINE L1 5312 5359 -787 1110 146 0 0 chr15 50377412 50377583 -51002938 - AluSg/x SINE Alu -4 306 136 263 146 73 0 chr15 50377586 50377641 -51002880 + Charlie1 DNA MER1_type 2702 2760 -1 507 120 0 0 chr15 50378606 50378681 -51001840 - AluS SINE Alu -237 76 2 2932 202 59 10 chr15 50379068 50379745 -51000776 - MER67C LTR ERV1 0 710 1 4277 157 42 57 chr15 50380102 50381015 -50999506 - MER4D LTR ERV1 0 903 5 1652 304 57 48 chr15 50381192 50381986 -50998535 + L2 LINE L2 1994 2794 -520 29 0 0 0 chr15 50382068 50382097 -50998424 + AT_rich Low_complexity Low_complexity 1 29 0 438 216 39 52 chr15 50382125 50382278 -50998243 - Charlie2 DNA MER1_type -570 2292 2142 1026 239 123 28 chr15 50382309 50382707 -50997814 - Charlie2b DNA MER1_type -1196 1586 1151 3153 107 29 68 chr15 50382712 50383328 -50997193 + MER4B LTR ERV1 1 755 -24 2032 140 59 8 chr15 50383328 50383685 -50996836 - THE1C LTR MaLR 0 375 1 3153 107 29 68 chr15 50383685 50383706 -50996815 + MER4B LTR ERV1 755 775 -4 722 257 53 50 chr15 50383729 50384052 -50996469 - Charlie2b DNA MER1_type -1643 1139 816 1976 119 3 22 chr15 50384124 50384476 -50996045 - MER4A LTR ERV1 0 664 261 610 124 0 10 chr15 50384476 50384573 -50995948 - MER4A LTR ERV1 -566 98 3 15759 103 61 14 chr15 50384581 50387219 -50993302 - MER4A-int LTR ERV1 -2 6596 3837 607 141 37 61 chr15 50387201 50387364 -50993157 - MER4A-int LTR ERV1 -2905 3693 3535 * 28 48 0 0 chr15 50387601 50387643 -50992878 + AT_rich Low_complexity Low_complexity 1 42 0 683 283 20 20 chr15 50388072 50388270 -50992251 + MIR SINE MIR 8 205 -57 815 112 0 2 chr15 50388945 50389206 -50991315 + AluSx SINE Alu 1 310 0 242 231 0 0 chr15 50389307 50389359 -50991162 - L2 LINE L2 -15 3257 3206 1086 312 69 32 chr15 50389502 50390052 -50990469 - L2 LINE L2 -1 3312 2744 21 36 0 0 chr15 50390540 50390568 -50989953 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr15 50391212 50391232 -50989289 + (T)n Simple_repeat Simple_repeat 1 20 0 250 284 140 72 chr15 50391997 50392207 -50988314 + MER115 DNA AcHobo 302 526 -167 1815 175 101 45 chr15 50392207 50392671 -50987850 - LTR2B LTR ERV1 0 490 1 440 144 19 39 chr15 50392671 50392775 -50987746 + MER115 DNA AcHobo 523 624 -69 1208 241 7 13 chr15 50392781 50393080 -50987441 - L1MD2 LINE L1 -23 6336 6040 1278 162 45 121 chr15 50393107 50393746 -50986775 + MER4C LTR ERV1 2 465 0 31 44 0 0 chr15 50395060 50395105 -50985416 + AT_rich Low_complexity Low_complexity 1 45 0 487 281 115 31 chr15 50395197 50395546 -50984975 - L1ME4a LINE L1 -17 6173 5796 364 330 19 0 chr15 50395911 50396014 -50984507 - L2 LINE L2 -19 3253 3149 201 328 17 0 chr15 50396472 50396530 -50983991 + L2 LINE L2 3189 3247 -25 25 31 0 0 chr15 50397279 50397311 -50983210 + AT_rich Low_complexity Low_complexity 1 32 0 999 160 123 11 chr15 50397916 50398303 -50982218 + LTR54 LTR ERV1 1 504 -6 410 268 73 68 chr15 50398920 50399512 -50981009 - L1ME4a LINE L1 -1101 5114 4525 492 310 151 11 chr15 50399638 50400267 -50980254 - L1ME4a LINE L1 -2096 4119 3403 25 0 0 0 chr15 50400639 50400664 -50979857 + AT_rich Low_complexity Low_complexity 1 25 0 296 250 72 20 chr15 50400773 50400967 -50979554 - L1ME4a LINE L1 -3857 2358 2198 456 330 96 10 chr15 50402337 50402546 -50977975 - MIR SINE MIR -15 247 21 1053 329 70 21 chr15 50403592 50404103 -50976418 + MLT1K LTR MaLR 45 580 -8 22 85 0 12 chr15 50404124 50404148 -50976373 + AT_rich Low_complexity Low_complexity 1 24 -57 180 0 0 0 chr15 50404148 50404168 -50976353 + (TA)n Simple_repeat Simple_repeat 1 20 0 22 85 0 12 chr15 50404168 50404225 -50976296 + AT_rich Low_complexity Low_complexity 24 81 0 1541 172 0 76 chr15 50404412 50404714 -50975807 + AluJb SINE Alu 7 285 -27 1620 262 72 38 chr15 50405547 50406130 -50974391 - MER67B LTR ERV1 0 661 59 2199 107 7 3 chr15 50406293 50406591 -50973930 + AluSg SINE Alu 1 299 -11 228 235 39 0 chr15 50406813 50406864 -50973657 - L2 LINE L2 -6 3307 3255 2089 144 39 14 chr15 50407128 50407483 -50973038 + MER47A DNA MER2_type 2 365 -1 237 250 36 129 chr15 50407692 50407832 -50972689 + MIR SINE MIR 68 194 -68 2150 114 0 29 chr15 50408609 50408917 -50971604 - AluSq SINE Alu -14 299 1 228 336 92 38 chr15 50409092 50409223 -50971298 + MLT1K LTR MaLR 90 227 -361 2040 249 117 28 chr15 50409223 50410297 -50970224 - L1MEc LINE L1 -2751 3464 2295 953 288 57 20 chr15 50410338 50410845 -50969676 - L1MEc LINE L1 -4021 2375 1850 1421 256 83 61 chr15 50411163 50411386 -50969135 - L1MEc LINE L1 -4544 1852 1635 1755 172 7 3 chr15 50411386 50411671 -50968850 + AluJo SINE Alu 2 287 -25 1421 256 83 61 chr15 50411671 50412605 -50967916 - L1MEc LINE L1 -4761 1635 670 3732 175 53 28 chr15 50412706 50412766 -50967755 + MER21A LTR ERV1 23 80 -851 222 37 0 0 chr15 50412766 50412793 -50967728 + (TC)n Simple_repeat Simple_repeat 2 28 0 3732 175 53 28 chr15 50412793 50413563 -50966958 + MER21A LTR ERV1 80 921 -10 562 299 84 72 chr15 50413578 50414103 -50966418 - L1MEc LINE L1 -5831 565 35 16874 142 16 12 chr15 50414256 50415374 -50965147 - L1PA11 LINE L1 0 6174 5062 2270 115 0 0 chr15 50415374 50415670 -50964851 - AluSg SINE Alu -14 296 1 16874 142 16 12 chr15 50415670 50418276 -50962245 - L1PA11 LINE L1 -1112 5062 2406 493 101 0 0 chr15 50418279 50418348 -50962173 - Alu SINE Alu -240 69 1 1083 166 42 0 chr15 50418348 50418541 -50961980 + MER57A LTR ERV1 203 403 0 21 0 0 0 chr15 50419588 50419609 -50960912 + AT_rich Low_complexity Low_complexity 1 21 0 1985 135 0 0 chr15 50419655 50419971 -50960550 - AluSg SINE Alu 0 316 1 23 0 0 0 chr15 50420196 50420219 -50960302 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr15 50420429 50420462 -50960059 + AT_rich Low_complexity Low_complexity 1 33 0 1289 318 162 38 chr15 50421619 50422620 -50957901 - L3 LINE CR1 -16 1561 437 242 143 0 0 chr15 50422747 50422782 -50957739 - U2 snRNA snRNA -150 38 4 1078 167 6 6 chr15 50423256 50423436 -50957085 - MLT1A2 LTR MaLR 0 374 195 986 226 29 39 chr15 50423454 50423733 -50956788 - PABL_B LTR ERV1 -20 647 372 281 293 75 15 chr15 50423758 50423891 -50956630 - PABL_A LTR ERV1 -462 198 58 265 174 0 0 chr15 50424073 50424119 -50956402 + T-rich Low_complexity Low_complexity 1 46 0 440 206 50 14 chr15 50424704 50424845 -50955676 + PABL_B LTR ERV1 520 665 -2 1051 172 6 6 chr15 50424847 50425027 -50955494 + MLT1A2 LTR MaLR 195 374 0 242 143 0 0 chr15 50425501 50425536 -50954985 + U2 snRNA snRNA 4 38 -150 615 333 87 55 chr15 50425663 50426156 -50954365 + L3 LINE CR1 437 945 -632 1445 114 31 9 chr15 50426549 50426777 -50953744 - AluSc SINE Alu -76 233 1 191 264 57 0 chr15 50426789 50426842 -50953679 + MIR3 SINE MIR 101 156 -52 275 149 45 45 chr15 50426926 50426993 -50953528 + L1MC4a LINE L1 5834 5900 -1908 1242 175 128 8 chr15 50427478 50427629 -50952892 - AluJb SINE Alu -14 298 166 189 0 0 0 chr15 50427629 50427650 -50952871 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1242 175 128 8 chr15 50427650 50427749 -50952772 - AluJb SINE Alu -146 166 18 402 301 19 0 chr15 50428368 50428471 -50952050 - L2 LINE L2 0 3272 3168 184 139 0 70 chr15 50429180 50429223 -50951298 + (T)n Simple_repeat Simple_repeat 1 40 0 477 244 25 8 chr15 50429425 50429544 -50950977 - MLT1A2 LTR MaLR -253 121 1 2391 167 28 9 chr15 50429544 50429974 -50950547 - MLT1A2-int LTR MaLR 0 1735 1298 435 306 32 9 chr15 50430047 50430266 -50950255 + L1ME LINE L1 5544 5767 -354 851 290 79 29 chr15 50430513 50430854 -50949667 + LTR16C LTR ERVL 134 491 0 1811 173 51 13 chr15 50431937 50432312 -50948209 - MLT1B LTR MaLR -1 389 1 23 0 0 0 chr15 50432453 50432476 -50948045 + AT_rich Low_complexity Low_complexity 1 23 0 563 319 86 25 chr15 50433468 50433900 -50946621 + L1M4 LINE L1 3673 4130 -2016 1766 158 10 29 chr15 50434494 50434804 -50945717 - AluJo SINE Alu -8 304 1 1573 166 49 0 chr15 50435517 50435782 -50944739 + AluJb SINE Alu 13 290 -22 24 0 0 0 chr15 50436199 50436223 -50944298 + AT_rich Low_complexity Low_complexity 1 24 0 2392 149 20 46 chr15 50436257 50436761 -50943760 - LTR22B LTR ERVK 0 492 2 459 269 144 10 chr15 50437111 50437319 -50943202 + MLT1J LTR MaLR 274 509 -2 447 301 136 14 chr15 50437321 50437534 -50942987 - MIR SINE MIR -21 241 3 445 346 97 48 chr15 50437865 50438299 -50942222 + L2 LINE L2 2818 3272 0 321 235 78 69 chr15 50440411 50440513 -50940008 - AluJb SINE Alu -199 103 1 186 143 0 0 chr15 50440517 50440552 -50939969 + (TC)n Simple_repeat Simple_repeat 2 36 0 701 52 21 0 chr15 50440555 50440652 -50939869 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 1143 203 5 0 chr15 50440668 50440860 -50939661 - AluJb SINE Alu -34 278 86 620 309 5 19 chr15 50440881 50441088 -50939433 - MIR SINE MIR 0 262 59 246 298 67 29 chr15 50441165 50441269 -50939252 - MIR3 SINE MIR -18 190 83 2235 85 7 7 chr15 50441483 50441777 -50938744 + AluSg SINE Alu 1 294 -16 183 80 0 0 chr15 50444237 50444262 -50936259 + (GA)n Simple_repeat Simple_repeat 2 26 0 1112 214 39 75 chr15 50444361 50444749 -50935772 - L1ME2 LINE L1 -28 6136 5763 192 97 0 0 chr15 50445812 50445843 -50934678 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 1573 199 3 7 chr15 50445843 50446130 -50934391 - AluJo SINE Alu -26 286 1 979 93 0 0 chr15 50446253 50446382 -50934139 - AluSg/x SINE Alu -9 300 172 307 267 198 10 chr15 50446482 50446583 -50933938 + L2 LINE L2 3194 3313 0 250 260 52 0 chr15 50446606 50446683 -50933838 - MIR SINE MIR 0 262 182 2091 169 37 27 chr15 50446684 50447101 -50933420 + MSTB LTR MaLR 1 374 0 597 289 17 12 chr15 50447101 50447274 -50933247 - MIR SINE MIR -77 185 12 889 221 94 85 chr15 50447570 50447877 -50932644 - MSTB1 LTR MaLR -114 318 9 399 41 0 0 chr15 50447885 50447934 -50932587 + (CAT)n Simple_repeat Simple_repeat 2 50 0 3347 136 15 9 chr15 50449472 50450480 -50930041 - L1PBa LINE L1 -5067 1796 634 1081 175 5 0 chr15 50450481 50450675 -50929846 - L1PBa LINE L1 -6666 197 3 1230 271 70 50 chr15 50450825 50450883 -50929638 - L1M4 LINE L1 -1816 4330 4275 2063 101 49 0 chr15 50450883 50451170 -50929351 - AluSx SINE Alu -11 301 1 1230 271 70 50 chr15 50451170 50451292 -50929229 - L1M4 LINE L1 -1871 4275 4157 709 32 0 21 chr15 50451292 50451387 -50929134 - L1PA4 LINE L1 0 6155 6063 1230 271 70 50 chr15 50451387 50451928 -50928593 - L1M4 LINE L1 -1989 4157 3593 341 319 80 42 chr15 50451946 50452209 -50928312 - L1MEd LINE L1 -5773 346 74 25 0 0 0 chr15 50452468 50452493 -50928028 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr15 50453514 50453537 -50926984 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 50453886 50453908 -50926613 + AT_rich Low_complexity Low_complexity 1 22 0 392 331 278 6 chr15 50454099 50454419 -50926102 + L2 LINE L2 2524 2930 -384 222 62 0 0 chr15 50455433 50455465 -50925056 + (TG)n Simple_repeat Simple_repeat 1 32 0 7009 51 5 2 chr15 50456225 50457300 -50923221 + L1PA7 LINE L1 5055 6141 -13 242 281 148 0 chr15 50457671 50457867 -50922654 + L1MC4a LINE L1 5701 5925 -1883 230 257 177 26 chr15 50458120 50458233 -50922288 + MIR SINE MIR 45 174 -88 22 35 0 0 chr15 50458969 50458998 -50921523 + AT_rich Low_complexity Low_complexity 1 29 0 297 230 168 9 chr15 50459583 50459696 -50920825 + MIR SINE MIR 131 261 -1 37 62 0 0 chr15 50459918 50459983 -50920538 + AT_rich Low_complexity Low_complexity 1 65 0 1903 128 3 28 chr15 50460246 50460565 -50919956 + AluSq SINE Alu 1 312 0 404 358 112 12 chr15 50460714 50461162 -50919359 - L2 LINE L2 -215 3057 2532 1824 116 4 0 chr15 50461258 50461508 -50919013 + AluSx SINE Alu 43 293 -19 11162 27 0 2 chr15 50461999 50464095 -50916426 + L1PA4 LINE L1 4058 6152 -3 22 0 0 0 chr15 50464095 50464117 -50916404 + AT_rich Low_complexity Low_complexity 1 22 0 229 281 0 0 chr15 50464624 50464681 -50915840 + L2 LINE L2 3254 3310 -3 339 228 76 44 chr15 50465035 50465193 -50915328 + MER113 DNA MER1_type? 19 181 -340 295 305 79 6 chr15 50465516 50465680 -50914841 - L1MEc LINE L1 -4576 2562 2387 7432 197 28 7 chr15 50465710 50466864 -50913657 + L1PA16 LINE L1 3510 4638 -1528 230 20 41 41 chr15 50466864 50466913 -50913608 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 7432 197 28 7 chr15 50466913 50468354 -50912167 + L1PA16 LINE L1 4638 6160 -6 295 305 80 52 chr15 50468361 50468935 -50911586 - L1MEc LINE L1 -4813 2325 1736 314 302 101 38 chr15 50468967 50469126 -50911395 - L1MEc LINE L1 -5318 1541 1373 23 33 0 0 chr15 50470332 50470362 -50910159 + AT_rich Low_complexity Low_complexity 1 30 0 229 146 36 36 chr15 50472589 50472644 -50907877 - MER5C DNA MER1_type -200 124 70 1637 40 15 0 chr15 50472652 50472853 -50907668 + AluY SINE Alu 100 303 -8 3768 274 45 22 chr15 50474103 50475583 -50904938 + L1MC/D LINE L1 3595 5108 -1038 522 0 0 0 chr15 50475600 50475658 -50904863 + (TA)n Simple_repeat Simple_repeat 2 59 0 714 237 136 4 chr15 50475725 50475953 -50904568 + L1ME2 LINE L1 5688 5945 -217 7004 112 8 3 chr15 50475962 50477137 -50903384 - L1MA3 LINE L1 -10 6295 5115 579 285 14 42 chr15 50477138 50477352 -50903169 + L1ME2 LINE L1 5935 6142 -22 255 207 46 46 chr15 50477389 50477476 -50903045 + LTR33 LTR ERVL 435 521 0 417 305 46 101 chr15 50478268 50478832 -50901689 - L2 LINE L2 -3 3310 2763 873 236 76 53 chr15 50480318 50480831 -50899690 - L1ME LINE L1 -581 5583 5083 2573 45 3 0 chr15 50480831 50481141 -50899380 - AluY SINE Alu 0 311 1 873 236 76 53 chr15 50481141 50481845 -50898676 - L1ME LINE L1 -1081 5083 4141 24 67 0 0 chr15 50481932 50481977 -50898544 + AT_rich Low_complexity Low_complexity 1 45 0 373 219 107 58 chr15 50482287 50482492 -50898029 + L1MC/D LINE L1 5256 5470 -2338 198 275 0 0 chr15 50482492 50482561 -50897960 + GA-rich Low_complexity Low_complexity 2 70 0 557 261 138 11 chr15 50482818 50483006 -50897515 + MIR SINE MIR 32 243 -19 203 77 0 51 chr15 50483845 50483884 -50896637 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 704 262 39 0 chr15 50484213 50484442 -50896079 - L1MA9 LINE L1 -37 6275 6038 202 313 0 47 chr15 50484639 50484703 -50895818 + L2 LINE L2 3210 3270 -2 2082 184 127 22 chr15 50484891 50485348 -50895173 - MLT1D LTR MaLR 0 505 1 239 315 7 68 chr15 50485757 50485903 -50894618 + L3b LINE CR1 1323 1459 -124 1831 139 21 11 chr15 50486406 50486693 -50893828 - AluSx SINE Alu -22 290 1 38 0 0 0 chr15 50486859 50486897 -50893624 + AT_rich Low_complexity Low_complexity 1 38 0 814 212 0 30 chr15 50487110 50487275 -50893246 + AluJb SINE Alu 148 307 -5 300 322 63 40 chr15 50487555 50487729 -50892792 - MIR SINE MIR -2 260 83 1573 173 39 45 chr15 50489412 50489724 -50890797 + AluJb SINE Alu 1 310 -2 2032 96 34 14 chr15 50489743 50490036 -50890485 + AluY SINE Alu 1 299 -12 1490 62 1 2 chr15 50490433 50490642 -50889879 - L1P LINE L1 -1179 4967 4761 428 287 11 0 chr15 50490761 50490855 -50889666 - MER81 DNA DNA 0 114 20 382 343 29 0 chr15 50490972 50491109 -50889412 - MIR SINE MIR -94 168 28 888 268 85 18 chr15 50492876 50493281 -50887240 + MLT1H LTR MaLR 10 549 0 613 336 128 30 chr15 50493294 50493630 -50886891 - L3 LINE CR1 0 1577 1209 243 243 68 14 chr15 50493633 50493707 -50886814 + MLT1J1 LTR MaLR 259 336 -110 354 293 0 0 chr15 50493753 50493859 -50886662 + MLT1I LTR MaLR 304 409 0 427 336 21 0 chr15 50493863 50494006 -50886515 - L3 LINE CR1 -769 808 663 668 94 0 0 chr15 50494030 50494126 -50886395 + L1 LINE L1 4515 4610 -1536 1451 192 34 6 chr15 50494126 50494448 -50886073 + L1MA4 LINE L1 5958 6289 -11 320 321 172 14 chr15 50494464 50494679 -50885842 - L3 LINE CR1 -951 626 378 506 331 56 32 chr15 50494784 50495035 -50885486 + MIR SINE MIR 2 258 -4 21 0 0 0 chr15 50495092 50495113 -50885408 + AT_rich Low_complexity Low_complexity 1 21 0 1777 151 10 7 chr15 50496659 50496958 -50883563 + AluSx SINE Alu 2 301 -11 1225 234 87 19 chr15 50498317 50498638 -50881883 + MER2 DNA MER2_type 2 344 0 1599 145 70 36 chr15 50499072 50499431 -50881090 - THE1C LTR MaLR -2 373 3 318 50 0 0 chr15 50500540 50500580 -50879941 + (CA)n Simple_repeat Simple_repeat 2 41 0 2460 64 0 0 chr15 50500843 50501141 -50879380 + AluY SINE Alu 1 298 -13 821 317 33 64 chr15 50501166 50501620 -50878901 + LTR16B LTR ERVL 2 441 -23 33 73 0 0 chr15 50502158 50502226 -50878295 + AT_rich Low_complexity Low_complexity 1 68 0 22 35 0 0 chr15 50503242 50503271 -50877250 + AT_rich Low_complexity Low_complexity 1 29 0 737 167 23 15 chr15 50503271 50503403 -50877118 + AluSq/x SINE Alu 2 134 -178 236 250 0 0 chr15 50503404 50503480 -50877041 + (TA)n Simple_repeat Simple_repeat 1 76 0 814 336 16 8 chr15 50503731 50503987 -50876534 + MIR SINE MIR 2 259 -3 250 301 51 68 chr15 50505653 50505829 -50874692 + MIR SINE MIR 20 192 -70 590 234 0 8 chr15 50505950 50506074 -50874447 - MIR SINE MIR -65 143 21 317 274 118 10 chr15 50506371 50506473 -50874048 - MIR3 SINE MIR -15 193 81 537 315 98 56 chr15 50506607 50507289 -50873232 + L1ME4a LINE L1 3662 4372 -1774 234 258 41 52 chr15 50507349 50507446 -50873075 + L2 LINE L2 1847 1942 -1372 232 349 140 36 chr15 50507518 50508080 -50872441 + L2 LINE L2 2652 3271 -1 387 292 137 31 chr15 50508090 50508585 -50871936 + L1ME4a LINE L1 4458 5019 -1127 536 324 92 36 chr15 50508784 50508967 -50871554 + L1ME4a LINE L1 5472 5643 -478 1489 214 93 38 chr15 50508967 50509156 -50871365 + MLT1C LTR MaLR 1 178 -289 2372 86 3 0 chr15 50509156 50509460 -50871061 + AluSg SINE Alu 1 305 -5 1489 214 93 38 chr15 50509460 50509713 -50870808 + MLT1C LTR MaLR 178 467 0 536 324 92 36 chr15 50509713 50510029 -50870492 + L1ME4a LINE L1 5643 5999 -122 8847 194 53 99 chr15 50510128 50511274 -50869247 + L1MA9 LINE L1 2651 3848 -2464 1388 174 44 34 chr15 50511274 50511568 -50868953 + AluJb SINE Alu 1 297 -15 8847 194 53 99 chr15 50511568 50512062 -50868459 + L1MA9 LINE L1 3848 4363 -1949 1090 189 5 24 chr15 50512062 50512268 -50868253 + AluJb SINE Alu 91 292 -20 8847 194 53 99 chr15 50512268 50513736 -50866785 + L1MA9 LINE L1 4363 5897 -415 1495 53 0 80 chr15 50513736 50513962 -50866559 + AluY SINE Alu 99 306 -5 8847 194 53 99 chr15 50513962 50514009 -50866512 + L1MA9 LINE L1 5897 5945 -367 225 65 0 0 chr15 50514009 50514040 -50866481 + (CA)n Simple_repeat Simple_repeat 2 32 0 8847 194 53 99 chr15 50514040 50514386 -50866135 + L1MA9 LINE L1 5945 6164 -148 225 0 0 0 chr15 50514386 50514411 -50866110 + (CA)n Simple_repeat Simple_repeat 1 25 0 8847 194 53 99 chr15 50514411 50514554 -50865967 + L1MA9 LINE L1 6164 6312 0 307 255 20 10 chr15 50514616 50514718 -50865803 + (TA)n Simple_repeat Simple_repeat 2 104 0 251 239 71 71 chr15 50515206 50515319 -50865202 + MIR3 SINE MIR 86 198 -10 2310 87 7 13 chr15 50516091 50516400 -50864121 + AluY SINE Alu 1 307 -4 445 235 0 10 chr15 50516717 50516815 -50863706 - Tigger7 DNA MER2_type -1 2490 2394 1242 215 23 4 chr15 50516820 50517076 -50863445 - Tigger7 DNA MER2_type -2226 261 1 294 320 23 39 chr15 50517436 50517564 -50862957 - L2 LINE L2 0 3272 3147 2566 53 0 0 chr15 50517869 50518173 -50862348 + AluY SINE Alu 1 304 -7 962 270 106 82 chr15 50518343 50519277 -50861244 + L1M4 LINE L1 2898 3853 -2293 643 224 68 0 chr15 50519279 50519426 -50861095 + L1MD2 LINE L1 19 175 -6365 * 1295 251 60 102 chr15 50519424 50519926 -50860595 + L1MD2 LINE L1 606 1086 -5454 493 236 74 30 chr15 50520062 50520265 -50860256 + L1MD2 LINE L1 1089 1300 -5240 2080 215 21 0 chr15 50520279 50520744 -50859777 - L1 LINE L1 -1602 4938 4464 284 76 86 9 chr15 50520778 50520883 -50859638 + (TA)n Simple_repeat Simple_repeat 2 114 0 8118 26 7 0 chr15 50520894 50522620 -50857901 - L1PA7 LINE L1 -18 6136 4405 5426 120 0 2 chr15 50523131 50524297 -50856224 - L1PA11 LINE L1 0 6174 4982 1198 203 94 14 chr15 50524311 50524889 -50855632 - L1MDa LINE L1 -3592 2948 2326 717 223 91 4 chr15 50524940 50525205 -50855316 + L1MD2 LINE L1 2662 2949 -3591 2944 242 68 29 chr15 50525221 50525380 -50855141 + L1MD2 LINE L1 4862 5013 -1740 1915 154 0 3 chr15 50525380 50525665 -50854856 - AluSg SINE Alu -26 284 1 2944 242 68 29 chr15 50525665 50527282 -50853239 + L1MD2 LINE L1 5013 6751 -2 275 218 23 11 chr15 50527425 50527512 -50853009 + (TA)n Simple_repeat Simple_repeat 2 89 0 2396 268 55 7 chr15 50527552 50528369 -50852152 + L1ME2 LINE L1 5299 6154 -10 252 303 51 34 chr15 50528626 50529057 -50851464 + L1 LINE L1 4067 4503 -1643 13533 145 42 8 chr15 50529350 50531646 -50848875 - Tigger1 DNA MER2_type 0 2418 45 5619 183 26 23 chr15 50531664 50532966 -50847555 + L1MA4 LINE L1 3866 5162 -1532 1628 182 7 4 chr15 50532966 50533246 -50847275 + AluJb SINE Alu 1 281 -31 5619 183 26 23 chr15 50533246 50533706 -50846815 + L1MA4 LINE L1 5162 5619 -1075 198 71 0 0 chr15 50533706 50533734 -50846787 + (CAA)n Simple_repeat Simple_repeat 1 28 0 5619 183 26 23 chr15 50533734 50534709 -50845812 + L1MA4 LINE L1 5619 6687 -7 311 181 43 11 chr15 50534757 50534851 -50845670 + L1MB3 LINE L1 6087 6183 0 224 330 117 67 chr15 50534880 50535119 -50845402 + L2 LINE L2 3022 3272 0 26 0 0 0 chr15 50535205 50535231 -50845290 + AT_rich Low_complexity Low_complexity 1 26 0 697 111 16 24 chr15 50535231 50535357 -50845164 + L1MA4 LINE L1 6176 6300 0 238 200 0 0 chr15 50535376 50535421 -50845100 - Tigger1 DNA MER2_type -2373 45 1 24 32 0 0 chr15 50535730 50535761 -50844760 + AT_rich Low_complexity Low_complexity 1 31 0 335 317 98 40 chr15 50535806 50536413 -50844108 + L1MC4a LINE L1 5288 5889 -273 2021 116 0 0 chr15 50537005 50537281 -50843240 - AluY SINE Alu -13 298 23 224 229 21 0 chr15 50537593 50537641 -50842880 + CT-rich Low_complexity Low_complexity 2 50 0 2579 190 29 59 chr15 50538058 50538689 -50841832 + LTR9 LTR ERV1 1 612 0 1999 144 0 10 chr15 50540036 50540335 -50840186 - AluSx SINE Alu -16 296 1 2069 146 13 0 chr15 50540689 50540997 -50839524 + AluSx SINE Alu 1 312 0 483 130 0 0 chr15 50541000 50541077 -50839444 + (GGGGA)n Simple_repeat Simple_repeat 2 78 0 2380 65 0 3 chr15 50541844 50542137 -50838384 + AluY SINE Alu 1 292 -19 556 332 79 53 chr15 50544994 50545906 -50834615 + HAL1 LINE L1 327 1262 -1245 306 301 173 0 chr15 50546035 50546191 -50834330 + HAL1 LINE L1 1682 1864 -643 2282 91 3 7 chr15 50546288 50546596 -50833925 + AluSc SINE Alu 1 307 -2 218 250 0 16 chr15 50547095 50547159 -50833362 + (TG)n Simple_repeat Simple_repeat 2 64 0 2104 115 0 17 chr15 50548447 50548742 -50831779 + AluSg SINE Alu 1 290 -20 209 309 24 71 chr15 50549018 50549102 -50831419 + MIR3 SINE MIR 4 83 -125 358 262 173 47 chr15 50549112 50549326 -50831195 + L1ME LINE L1 679 919 -5151 238 136 0 119 chr15 50549353 50549412 -50831109 + L1ME3 LINE L1 6107 6158 -4 200 266 128 75 chr15 50549424 50549612 -50830909 - L2 LINE L2 -620 2694 2497 1448 316 175 27 chr15 50549636 50550201 -50830320 - L2 LINE L2 -962 2352 1872 2122 117 3 35 chr15 50550201 50550518 -50830003 - AluSq SINE Alu -6 307 1 1448 316 175 27 chr15 50550518 50551064 -50829457 - L2 LINE L2 -1442 1872 1076 2046 124 0 0 chr15 50551856 50552162 -50828359 + AluSx SINE Alu 1 306 0 302 253 46 0 chr15 50553794 50553881 -50826640 - L2 LINE L2 -1477 1837 1747 465 233 185 0 chr15 50554638 50554784 -50825737 - MER5A DNA MER1_type -1 188 16 788 268 49 100 chr15 50555929 50556417 -50824104 - LTR16B LTR ERVL -1 463 1 323 263 207 20 chr15 50557729 50557927 -50822594 + MIR SINE MIR 28 262 0 551 288 128 55 chr15 50558464 50558957 -50821564 + L1M4 LINE L1 4127 4655 -1491 191 333 69 0 chr15 50560755 50560857 -50819664 - MIR SINE MIR -20 242 134 665 336 40 8 chr15 50562010 50562263 -50818258 + L3 LINE CR1 1312 1572 -5 2104 118 10 3 chr15 50562464 50562769 -50817752 + AluSg SINE Alu 1 307 -3 1427 200 64 0 chr15 50563232 50563562 -50816959 + L1MA5 LINE L1 5950 6300 0 526 190 10 0 chr15 50563784 50563884 -50816637 + AluJo SINE Alu 34 134 -178 22 70 0 0 chr15 50564473 50564516 -50816005 + AT_rich Low_complexity Low_complexity 1 43 0 322 323 45 76 chr15 50564769 50564992 -50815529 - MIR SINE MIR -10 252 37 369 338 102 47 chr15 50565252 50565595 -50814926 + L1PB4 LINE L1 58 419 -6431 230 301 0 0 chr15 50566420 50566493 -50814028 + L1PA15-16 LINE L1 1473 1545 -5304 12530 218 28 14 chr15 50566513 50571664 -50808857 + L1PB4 LINE L1 1355 6848 -11 2092 122 26 0 chr15 50571828 50572132 -50808389 + AluSx SINE Alu 1 312 0 234 368 35 9 chr15 50572407 50572521 -50808000 + MIR SINE MIR 30 146 -62 3183 14 0 0 chr15 50573023 50573387 -50807134 + L1PA2 LINE L1 5788 6151 -4 467 261 140 19 chr15 50573442 50573599 -50806922 + MIR3 SINE MIR 8 183 -25 328 143 0 143 chr15 50573885 50573920 -50806601 + MADE1 DNA Mariner 5 23 -57 1978 48 0 183 chr15 50573920 50574297 -50806224 - AluY SINE Alu -3 308 1 328 143 0 143 chr15 50574297 50574345 -50806176 + MADE1 DNA Mariner 23 76 -4 8875 92 6 0 chr15 50574578 50576617 -50803904 + L1PA7 LINE L1 4106 6153 -1 1358 212 67 3 chr15 50577617 50577933 -50802588 - MER58B DNA MER1_type 0 341 6 236 280 208 0 chr15 50578105 50578230 -50802291 - MIR SINE MIR 0 262 112 643 291 114 0 chr15 50578256 50578555 -50801966 + MER46C DNA MER2_type 5 337 -1 224 354 46 15 chr15 50578587 50578717 -50801804 + MIR3 SINE MIR 2 135 -73 239 348 30 49 chr15 50579132 50579296 -50801225 + L2 LINE L2 3102 3262 -10 321 309 143 17 chr15 50579399 50579574 -50800947 + MIR SINE MIR 23 219 -43 990 226 15 5 chr15 50580895 50581099 -50799422 - MER58A DNA MER1_type 0 224 19 413 316 79 7 chr15 50581099 50581251 -50799270 + MIR3 SINE MIR 5 167 -41 355 115 16 0 chr15 50581526 50581587 -50798934 + MER53 DNA DNA 125 186 -3 472 234 48 8 chr15 50583659 50583783 -50796738 + MLT1J2 LTR MaLR 3 131 -319 523 305 138 0 chr15 50583836 50584003 -50796518 + MLT1J2 LTR MaLR 240 429 -21 624 266 11 11 chr15 50586686 50586874 -50793647 - MER5A DNA MER1_type -1 188 1 34833 38 0 1 chr15 50587637 50592702 -50787819 - L1PA4 LINE L1 0 6155 1094 22 35 0 0 chr15 50593312 50593341 -50787180 + AT_rich Low_complexity Low_complexity 1 29 0 203 175 0 0 chr15 50593935 50593975 -50786546 + A-rich Low_complexity Low_complexity 1 40 0 220 321 92 9 chr15 50594340 50594449 -50786072 - L2 LINE L2 -19 3253 3136 4823 97 35 17 chr15 50594532 50595285 -50785236 + L1MA3 LINE L1 5540 6305 0 1484 151 3 120 chr15 50595437 50595761 -50784760 + AluSx SINE Alu 1 286 -26 243 51 26 26 chr15 50595812 50595851 -50784670 + MADE1 DNA Mariner 1 39 -41 6682 8 0 0 chr15 50596256 50597006 -50783515 + L1PA2 LINE L1 5404 6153 -2 279 0 0 0 chr15 50597101 50597132 -50783389 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 414 282 80 36 chr15 50597262 50597764 -50782757 + L1P LINE L1 4762 5275 -871 2179 88 3 7 chr15 50598498 50598792 -50781729 + AluSx SINE Alu 1 293 -19 2341 145 57 15 chr15 50601046 50601523 -50778998 + L1MB4 LINE L1 5678 6174 -6 239 61 122 0 chr15 50602062 50602111 -50778410 + L1MB4 LINE L1 6126 6180 0 1276 269 131 12 chr15 50602153 50602718 -50777803 + L1MC4 LINE L1 5254 5885 -1923 1092 232 21 21 chr15 50602719 50603055 -50777466 + L1MC4 LINE L1 6975 7310 -732 2288 179 42 11 chr15 50603415 50603970 -50776551 + L1MB7 LINE L1 4854 5434 -744 483 248 0 0 chr15 50603964 50604077 -50776444 + L1MA9 LINE L1 6162 6274 -38 * 3312 182 20 46 chr15 50604096 50604859 -50775662 + L1MB7 LINE L1 5431 6173 -11 2450 81 0 0 chr15 50605888 50606197 -50774324 - AluY SINE Alu -2 309 1 310 360 0 0 chr15 50606293 50606393 -50774128 - L1MC4a LINE L1 -1268 6540 6441 496 186 157 2 chr15 50606591 50606766 -50773755 - MER46A DNA MER2_type -1 235 1 886 236 66 12 chr15 50606954 50607196 -50773325 - MIR SINE MIR -2 260 6 314 350 118 43 chr15 50607231 50607622 -50772899 + L1MC4a LINE L1 5517 5936 -1872 701 287 43 55 chr15 50607659 50607987 -50772534 - L2 LINE L2 -67 3246 2923 586 243 82 29 chr15 50608047 50608253 -50772268 + LTR16C LTR ERVL 79 295 -196 586 189 151 19 chr15 50608253 50608412 -50772109 - MER5A DNA MER1_type -1 188 9 328 217 52 61 chr15 50608480 50608595 -50771926 + LTR16C LTR ERVL 367 480 -11 560 236 104 91 chr15 50608602 50608987 -50771534 - L2 LINE L2 -389 2925 2536 529 295 4 97 chr15 50608988 50609225 -50771296 - L2 LINE L2 -999 2315 2101 1758 153 13 36 chr15 50610336 50610644 -50769877 + AluSx SINE Alu 1 301 -11 227 111 0 0 chr15 50610644 50610689 -50769832 - LTR66 LTR ERVL -172 438 394 27 0 0 0 chr15 50610746 50610773 -50769748 + AT_rich Low_complexity Low_complexity 1 27 0 24 67 0 0 chr15 50610889 50610934 -50769587 + AT_rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr15 50611183 50611208 -50769313 + AT_rich Low_complexity Low_complexity 1 25 0 399 306 38 19 chr15 50611276 50611433 -50769088 - MIR SINE MIR -19 243 84 194 289 19 0 chr15 50611909 50611961 -50768560 - MIR3 SINE MIR -3 205 153 278 256 24 37 chr15 50612319 50612401 -50768120 + MIR3 SINE MIR 87 167 -41 419 213 43 0 chr15 50612406 50612500 -50768021 - MER20 DNA MER1_type -33 186 89 230 330 184 0 chr15 50613561 50613773 -50766748 - L1MC/D LINE L1 -2014 5794 5544 279 289 0 11 chr15 50614607 50614697 -50765824 - LTR33 LTR ERVL -387 134 46 252 255 0 20 chr15 50615065 50615116 -50765405 + MIR3 SINE MIR 111 160 -48 264 313 99 30 chr15 50615154 50615285 -50765236 + MER5A DNA MER1_type 50 189 0 2337 93 0 3 chr15 50615625 50615957 -50764564 - L1PB1 LINE L1 0 6151 5821 339 293 55 55 chr15 50616016 50616180 -50764341 + MIR3 SINE MIR 42 205 -3 1889 62 0 0 chr15 50617283 50617507 -50763014 + AluY SINE Alu 37 260 -51 977 187 80 126 chr15 50617790 50618164 -50762357 + MLT1A1 LTR MaLR 1 357 -8 187 274 77 51 chr15 50618419 50618534 -50761987 + MIR SINE MIR 53 170 -92 414 314 53 53 chr15 50618534 50618837 -50761684 - LTR16C LTR ERVL -1 490 188 294 200 29 14 chr15 50619838 50619908 -50760613 - MIR SINE MIR -101 161 91 1206 64 0 19 chr15 50619928 50620085 -50760436 + AluY SINE Alu 149 302 -9 2101 128 0 3 chr15 50621099 50621397 -50759124 + AluSx SINE Alu 1 297 -15 205 196 0 22 chr15 50621552 50621598 -50758923 + T-rich Low_complexity Low_complexity 5 49 0 633 311 73 76 chr15 50621601 50621929 -50758592 + L2 LINE L2 2897 3223 -49 207 207 17 0 chr15 50621931 50621989 -50758532 + (TGAA)n Simple_repeat Simple_repeat 3 61 0 272 288 34 51 chr15 50621991 50622109 -50758412 - L2 LINE L2 -1028 2286 2171 235 294 165 18 chr15 50622158 50622267 -50758254 + MER5A DNA MER1_type 64 188 -1 556 297 89 38 chr15 50623173 50623409 -50757112 + MIR SINE MIR 15 262 0 331 283 56 56 chr15 50623606 50623804 -50756717 - MARNA DNA Mariner -109 477 280 2335 62 13 3 chr15 50623824 50624131 -50756390 - AluY SINE Alu 0 311 2 306 327 96 45 chr15 50625477 50625676 -50754845 + MIR SINE MIR 20 228 -34 1426 192 20 9 chr15 50625963 50626282 -50754239 + L1MA7 LINE L1 5099 5427 -744 785 174 48 18 chr15 50626282 50626449 -50754072 + AluJo SINE Alu 121 292 -20 4243 168 22 27 chr15 50626460 50626680 -50753841 + L1MA7 LINE L1 5428 5648 -643 1741 151 0 108 chr15 50626680 50627070 -50753451 - MER7A DNA MER2_type 0 346 1 4243 168 22 27 chr15 50627070 50627713 -50752808 + L1MA7 LINE L1 5648 6287 -4 2280 103 0 31 chr15 50628186 50628506 -50752015 + AluSg SINE Alu 1 310 0 234 213 21 0 chr15 50628930 50628977 -50751544 - MER5B DNA MER1_type -129 49 2 511 283 46 6 chr15 50629551 50629724 -50750797 + MIR SINE MIR 57 236 -26 185 271 107 36 chr15 50629871 50630011 -50750510 - L2 LINE L2 -3 3310 3161 270 0 0 0 chr15 50631341 50631371 -50749150 + (CA)n Simple_repeat Simple_repeat 1 30 0 196 308 0 0 chr15 50638086 50638138 -50742383 + L2 LINE L2 2591 2642 -672 183 367 60 33 chr15 50638217 50638367 -50742154 + L2 LINE L2 2823 2976 -338 785 288 12 33 chr15 50638966 50639049 -50741472 + MIR SINE MIR 23 106 -156 1829 143 4 0 chr15 50639049 50639321 -50741200 + AluSc SINE Alu 37 309 0 785 288 12 33 chr15 50639321 50639480 -50741041 + MIR SINE MIR 106 260 -2 233 305 166 13 chr15 50639853 50640004 -50740517 - MIR SINE MIR -11 251 78 387 295 85 30 chr15 50640406 50640606 -50739915 - MIR SINE MIR -2 260 50 3009 109 2 2 chr15 50641083 50641522 -50738999 - L1PA10 LINE L1 -13 6155 5717 192 259 92 97 chr15 50642631 50642816 -50737705 - MIR SINE MIR 0 262 79 727 279 73 9 chr15 50643289 50643522 -50736999 - MIR SINE MIR -12 250 3 6699 117 17 21 chr15 50643799 50644805 -50735716 + L1MA2 LINE L1 5105 6109 -195 2179 86 4 0 chr15 50644805 50645126 -50735395 - AluY SINE Alu 0 322 1 6699 117 17 21 chr15 50645126 50645318 -50735203 + L1MA2 LINE L1 6109 6300 -4 271 350 86 7 chr15 50645826 50645966 -50734555 - MIR3 SINE MIR -55 153 3 223 263 76 93 chr15 50646394 50646512 -50734009 - MIR SINE MIR -57 205 90 2375 78 3 3 chr15 50646545 50646852 -50733669 - AluY SINE Alu -4 307 1 564 311 99 9 chr15 50647019 50647241 -50733280 + MIR SINE MIR 21 262 0 181 222 0 0 chr15 50648538 50648574 -50731947 - MIR SINE MIR -149 113 78 4280 243 115 34 chr15 50648836 50650754 -50729767 + L1ME2 LINE L1 2666 4955 -1209 1901 165 7 0 chr15 50650754 50651063 -50729458 + AluJb SINE Alu 1 311 -1 4280 243 115 34 chr15 50651063 50652370 -50728151 + L1ME2 LINE L1 4955 6155 -9 201 349 64 60 chr15 50653720 50654001 -50726520 + L2 LINE L2 2328 2609 -705 32 43 0 0 chr15 50654015 50654061 -50726460 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr15 50654430 50654453 -50726068 + AT_rich Low_complexity Low_complexity 1 23 0 525 322 81 0 chr15 50655510 50655659 -50724862 + LTR16A LTR ERVL 176 336 -114 2119 326 40 25 chr15 50655791 50656800 -50723721 + HERV16 LTR ERVL 76 1099 -3897 659 321 48 11 chr15 50657015 50657255 -50723266 + HERV16 LTR ERVL 1357 1675 -3433 662 330 34 0 chr15 50657300 50657509 -50723012 + ERVL LTR ERVL 4217 4432 -1332 644 329 25 25 chr15 50657737 50658020 -50722501 + ERVL LTR ERVL 4708 4990 -774 21 71 0 0 chr15 50658308 50658350 -50722171 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr15 50659427 50659456 -50721065 + AT_rich Low_complexity Low_complexity 1 29 0 400 324 0 0 chr15 50659944 50660049 -50720472 - L2 LINE L2 0 3272 3168 209 241 37 0 chr15 50663363 50663417 -50717104 + (CATA)n Simple_repeat Simple_repeat 1 56 0 594 51 0 0 chr15 50663418 50663496 -50717025 + L1PA3 LINE L1 6075 6152 -3 2723 57 3 19 chr15 50663523 50663892 -50716629 + L1PA8A LINE L1 5769 6131 0 343 322 14 27 chr15 50664223 50664369 -50716152 - MIR SINE MIR -37 225 82 325 338 94 38 chr15 50664672 50665012 -50715509 - L2 LINE L2 -527 2787 2429 26 0 0 0 chr15 50665242 50665268 -50715253 + AT_rich Low_complexity Low_complexity 1 26 0 271 321 127 0 chr15 50666012 50666146 -50714375 - MIR3 SINE MIR -3 205 55 21 36 0 0 chr15 50668838 50668866 -50711655 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr15 50669022 50669050 -50711471 + AT_rich Low_complexity Low_complexity 1 28 0 1228 91 42 0 chr15 50672214 50672379 -50708142 + AluSg/x SINE Alu 128 299 -11 195 42 0 0 chr15 50672379 50672403 -50708118 + (GA)n Simple_repeat Simple_repeat 1 24 0 2114 210 10 0 chr15 50673713 50674099 -50706422 + MLT1F1 LTR MaLR 125 514 -53 340 314 113 8 chr15 50674345 50674469 -50706052 + L2 LINE L2 3136 3272 0 265 249 64 98 chr15 50674691 50674864 -50705657 - MIR SINE MIR -50 212 46 23 33 0 0 chr15 50674946 50674976 -50705545 + AT_rich Low_complexity Low_complexity 1 30 0 741 288 36 24 chr15 50675303 50675553 -50704968 + MIR SINE MIR 5 257 -5 237 318 0 12 chr15 50675693 50675778 -50704743 + MIR SINE MIR 53 136 -126 1287 233 41 6 chr15 50677328 50677671 -50702850 - L1 LINE L1 -914 5232 4878 1808 156 18 9 chr15 50677678 50678004 -50702517 + L1MB2 LINE L1 5332 5660 -511 1920 118 38 13 chr15 50678008 50678322 -50702199 - L1PA11 LINE L1 -5 6169 5848 2225 181 35 27 chr15 50678322 50678488 -50702033 + L1PA11 LINE L1 5662 5825 -346 1902 127 6 62 chr15 50678488 50678810 -50701711 + AluSq SINE Alu 1 304 -9 2225 181 35 27 chr15 50678810 50679129 -50701392 + L1MB2 LINE L1 5825 6152 -19 1621 170 4 11 chr15 50679151 50679422 -50701099 - AluJo SINE Alu -9 303 35 228 191 0 0 chr15 50679905 50679947 -50700574 - Charlie8 DNA MER1_type -2153 264 223 201 39 0 0 chr15 50681502 50681528 -50698993 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 905 239 101 80 chr15 50682516 50682841 -50697680 + L1MC5 LINE L1 7213 7530 -431 3862 24 0 9 chr15 50682841 50683330 -50697191 + L1PA3 LINE L1 5703 6155 0 905 239 101 80 chr15 50683330 50683689 -50696832 + L1MC5 LINE L1 7530 7911 -50 334 26 0 0 chr15 50684271 50684310 -50696211 + MADE1 DNA Mariner 1 39 -41 679 297 57 9 chr15 50685265 50685477 -50695044 - MIR SINE MIR 0 262 41 221 318 142 34 chr15 50687192 50687368 -50693153 - MIR SINE MIR -59 203 9 201 154 0 0 chr15 50687844 50687883 -50692638 + (CA)n Simple_repeat Simple_repeat 2 40 0 273 267 242 0 chr15 50688588 50688708 -50691813 - MIR SINE MIR -81 181 33 4651 144 24 1 chr15 50689370 50690192 -50690329 + L1MA4 LINE L1 5455 6295 -5 290 331 59 29 chr15 50690953 50691089 -50689432 + L2 LINE L2 3123 3262 -10 1997 141 30 0 chr15 50691431 50691730 -50688791 + AluSx SINE Alu 5 312 0 279 0 0 0 chr15 50691953 50691984 -50688537 + (CA)n Simple_repeat Simple_repeat 1 31 0 2969 140 16 6 chr15 50692522 50693023 -50687498 - L1PA16 LINE L1 -9 6157 5652 315 0 0 0 chr15 50693558 50693593 -50686928 + (TG)n Simple_repeat Simple_repeat 2 36 0 196 214 54 54 chr15 50694362 50694418 -50686103 + MIR SINE MIR 75 130 -78 27 0 0 0 chr15 50694459 50694486 -50686035 + AT_rich Low_complexity Low_complexity 1 27 0 510 217 27 65 chr15 50696038 50696222 -50684299 + MER5B DNA MER1_type 1 177 -1 242 364 45 0 chr15 50696330 50696440 -50684081 + MIR SINE MIR 37 151 -111 317 270 54 9 chr15 50696825 50696936 -50683585 + L3b LINE CR1 1286 1401 -182 449 276 86 31 chr15 50697036 50697199 -50683322 + MIR SINE MIR 12 183 -79 416 169 14 0 chr15 50697200 50697271 -50683250 + MER94 DNA DNA 1 72 -62 412 296 37 0 chr15 50698406 50698514 -50682007 + MIR SINE MIR 89 200 -62 352 270 178 33 chr15 50698906 50699058 -50681463 - MER5A DNA MER1_type -9 180 7 442 256 58 8 chr15 50699626 50699747 -50680774 + L2 LINE L2 3149 3275 -38 1963 135 10 0 chr15 50700112 50700400 -50680121 - AluSg SINE Alu -14 296 6 292 309 45 0 chr15 50701367 50701477 -50679044 - L2 LINE L2 0 3313 3199 1437 175 4 0 chr15 50701796 50702047 -50678474 + L1PA13 LINE L1 3704 3955 -2191 1376 107 0 0 chr15 50702064 50702241 -50678280 - AluSx SINE Alu -78 234 58 253 140 0 0 chr15 50702241 50702291 -50678230 + Alu SINE Alu 251 300 0 6862 171 23 14 chr15 50702298 50704485 -50676036 + L1PA13 LINE L1 3958 6163 0 31 0 0 0 chr15 50704492 50704523 -50675998 + AT_rich Low_complexity Low_complexity 1 31 0 1138 243 36 45 chr15 50704578 50704998 -50675523 + L1M4 LINE L1 2110 2525 -3621 235 211 13 26 chr15 50705012 50705088 -50675433 + L1M4 LINE L1 4975 5049 -1097 23 0 0 0 chr15 50705130 50705153 -50675368 + AT_rich Low_complexity Low_complexity 1 23 0 491 317 102 44 chr15 50705293 50705766 -50674755 + L1M4 LINE L1 4622 5121 -1025 1979 156 3 0 chr15 50705771 50706073 -50674448 + AluSx SINE Alu 1 303 -9 6057 111 39 0 chr15 50706155 50707098 -50673423 - L1PA11 LINE L1 0 6174 5215 19959 177 22 101 chr15 50707102 50708473 -50672048 - L1P3 LINE L1 -813 5648 4171 2435 112 89 63 chr15 50708473 50708946 -50671575 + LTR21A LTR ERV1 2 486 -19 19959 177 22 101 chr15 50708946 50713210 -50667311 - L1P3 LINE L1 -2290 4171 3 209 306 65 37 chr15 50713660 50713743 -50666778 + MIR SINE MIR 72 160 -102 1698 215 5 11 chr15 50713743 50714110 -50666411 + MLT1A1 LTR MaLR 1 365 0 209 306 65 37 chr15 50714110 50714134 -50666387 + MIR SINE MIR 160 182 -80 2221 143 29 61 chr15 50714429 50714871 -50665650 + MSTA LTR MaLR 1 428 0 248 459 4 0 chr15 50714917 50715163 -50665358 - L2 LINE L2 -221 3051 2805 207 100 0 0 chr15 50715362 50715392 -50665129 + (TATATG)n Simple_repeat Simple_repeat 6 35 0 644 346 77 35 chr15 50715538 50716173 -50664348 - L2 LINE L2 -663 2651 1990 261 0 0 0 chr15 50716391 50716420 -50664101 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2181 93 7 0 chr15 50716424 50716704 -50663817 - AluSc SINE Alu -25 284 3 2196 113 0 0 chr15 50717266 50717599 -50662922 + AluSx SINE Alu 1 333 0 264 234 195 0 chr15 50717899 50717976 -50662545 + L2 LINE L2 3190 3281 -32 830 256 177 67 chr15 50718268 50718804 -50661717 + MLT1H1 LTR MaLR 1 555 0 2698 94 6 0 chr15 50719372 50719734 -50660787 + THE1B LTR MaLR 1 364 0 3723 102 2 4 chr15 50720164 50720676 -50659845 + MER9 LTR ERVK 1 511 0 497 297 174 27 chr15 50721030 50721444 -50659077 + L2 LINE L2 2222 2696 -618 907 247 57 4 chr15 50721467 50721694 -50658827 + MIR SINE MIR 2 240 -22 184 336 100 74 chr15 50721880 50722219 -50658302 + L2 LINE L2 2910 3257 -15 207 323 182 20 chr15 50722355 50722454 -50658067 - MIR SINE MIR -64 144 30 433 325 15 45 chr15 50724282 50724482 -50656039 - MIR SINE MIR -46 216 23 2198 107 13 13 chr15 50724501 50724810 -50655711 - AluSx SINE Alu -3 309 1 321 292 0 0 chr15 50725385 50725457 -50655064 - L2 LINE L2 -5 3308 3237 272 352 62 31 chr15 50726196 50726324 -50654197 + MIR3 SINE MIR 15 146 -62 278 341 0 0 chr15 50726483 50726568 -50653953 - MIR SINE MIR -130 132 48 483 329 58 75 chr15 50727645 50728004 -50652517 + L2 LINE L2 2920 3272 0 1819 139 80 0 chr15 50728156 50728443 -50652078 - AluSq SINE Alu -3 310 1 289 300 62 12 chr15 50728468 50728628 -50651893 + L1ME LINE L1 5651 5818 -303 26 0 0 0 chr15 50728805 50728831 -50651690 + AT_rich Low_complexity Low_complexity 1 26 0 530 297 138 22 chr15 50729393 50729625 -50650896 - MIR SINE MIR -3 259 1 356 331 27 49 chr15 50731782 50731966 -50648555 + MER5A DNA MER1_type 1 180 -9 319 304 161 19 chr15 50731968 50732129 -50648392 - MER5A DNA MER1_type -5 184 1 3177 113 64 23 chr15 50733962 50734526 -50645995 - LTR18B LTR ERVL -27 587 1 2970 207 4 2 chr15 50734714 50735264 -50645257 - HERVL18 LTR ERVL -2556 3491 2941 1448 161 4 4 chr15 50735300 50735542 -50644979 - HERVL18 LTR ERVL -3086 2961 2720 * 8733 195 37 10 chr15 50735541 50737830 -50642691 - HERVL18 LTR ERVL -3595 2452 4 3423 110 45 23 chr15 50737865 50738439 -50642082 - LTR18B LTR ERVL -27 587 1 1783 84 26 0 chr15 50739037 50739264 -50641257 - AluSc SINE Alu -76 233 1 193 264 57 0 chr15 50739276 50739329 -50641192 + MIR3 SINE MIR 101 156 -52 256 149 45 45 chr15 50739413 50739480 -50641041 + L1MC/D LINE L1 5834 5900 -1908 1453 180 88 0 chr15 50739965 50740126 -50640395 - AluJb SINE Alu -11 301 107 227 54 27 0 chr15 50740126 50740163 -50640358 + (TTTG)n Simple_repeat Simple_repeat 4 41 0 1453 180 88 0 chr15 50740163 50740262 -50640259 - AluJb SINE Alu -205 107 18 397 301 19 0 chr15 50740881 50740984 -50639537 - L2 LINE L2 0 3272 3168 420 272 78 42 chr15 50741019 50741210 -50639311 - MIR SINE MIR 0 262 65 27 29 0 0 chr15 50741335 50741369 -50639152 + AT_rich Low_complexity Low_complexity 1 34 0 1855 118 62 54 chr15 50741664 50742036 -50638485 + THE1C LTR MaLR 1 375 0 1716 156 58 0 chr15 50742408 50742684 -50637837 - AluJb SINE Alu -20 292 1 3489 133 35 68 chr15 50742852 50743303 -50637218 - L1MA9 LINE L1 -48 6264 5845 297 0 0 0 chr15 50743303 50743336 -50637185 + (TG)n Simple_repeat Simple_repeat 2 34 0 3489 133 35 68 chr15 50743336 50743618 -50636903 - L1MA9 LINE L1 -467 5845 5555 698 247 91 5 chr15 50743778 50743997 -50636524 - MIR SINE MIR -10 252 15 234 334 194 22 chr15 50746532 50746897 -50633624 - L2 LINE L2 -1576 1738 1311 636 244 110 34 chr15 50746941 50747210 -50633311 + L1ME4a LINE L1 5507 5807 -314 2249 97 0 22 chr15 50747210 50747521 -50633000 + AluY SINE Alu 1 304 -7 636 244 110 34 chr15 50747521 50747579 -50632942 + L1ME4a LINE L1 5807 5859 -262 282 284 29 0 chr15 50748301 50748403 -50632118 + Charlie8 DNA MER1_type 387 491 -1926 21 36 0 0 chr15 50748515 50748543 -50631978 + AT_rich Low_complexity Low_complexity 1 28 0 1761 75 83 0 chr15 50748903 50749144 -50631377 + AluSp SINE Alu 31 291 -22 461 282 245 28 chr15 50749443 50749766 -50630755 - L2 LINE L2 -26 3287 2895 1273 167 46 49 chr15 50749768 50750097 -50630424 + L1MA9 LINE L1 5982 6309 -3 252 130 0 0 chr15 50750284 50750330 -50630191 + (TG)n Simple_repeat Simple_repeat 2 47 0 270 81 0 0 chr15 50750501 50750538 -50629983 + (ATG)n Simple_repeat Simple_repeat 1 37 0 258 302 38 9 chr15 50750883 50750989 -50629532 + MER103 DNA DNA 13 121 -45 677 227 0 8 chr15 50751157 50751289 -50629232 + FLAM_A SINE Alu 1 131 -2 633 255 82 25 chr15 50751471 50751667 -50628854 - L2 LINE L2 -1 3312 3106 206 229 16 82 chr15 50751663 50751724 -50628797 + MIR3 SINE MIR 117 173 -35 * 330 267 51 56 chr15 50751734 50751929 -50628592 - MLT1J LTR MaLR -25 486 293 28 48 0 0 chr15 50753213 50753255 -50627266 + AT_rich Low_complexity Low_complexity 1 42 0 2154 109 61 0 chr15 50753361 50753654 -50626867 - AluSx SINE Alu -1 311 1 260 234 9 27 chr15 50753819 50753930 -50626591 + L1MC5 LINE L1 7807 7915 -46 30685 103 13 55 chr15 50754438 50758295 -50622226 + L1PA7 LINE L1 9 3485 -2669 2329 103 0 0 chr15 50758295 50758595 -50621926 + AluY SINE Alu 1 300 -11 30685 103 13 55 chr15 50758595 50761158 -50619363 + L1PA7 LINE L1 3485 6152 -2 6686 177 59 22 chr15 50761475 50762986 -50617535 - L1MC3 LINE L1 -8 7777 6212 2105 140 31 3 chr15 50762996 50763354 -50617167 - MER39 LTR ERV1 0 707 340 895 210 73 5 chr15 50763387 50763606 -50616915 - MER39 LTR ERV1 -455 252 19 811 207 44 16 chr15 50763615 50763886 -50616635 - L1MC2 LINE L1 -189 6155 5916 1563 186 7 28 chr15 50764100 50764385 -50616136 + AluJo SINE Alu 1 279 -33 328 329 45 26 chr15 50764456 50764611 -50615910 + MIR3 SINE MIR 43 200 -8 1453 86 5 0 chr15 50765668 50765866 -50614655 - L1PA12 LINE L1 -4 6164 5966 21 0 0 0 chr15 50766354 50766375 -50614146 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr15 50818777 50818802 -50561719 + AT_rich Low_complexity Low_complexity 1 25 0 6709 194 17 23 chr15 50819265 50822429 -50558092 - L1MA3 LINE L1 0 7724 4585 * 6729 133 19 130 chr15 50822397 50823962 -50556559 - L1P LINE L1 -1252 6313 4922 2883 221 77 29 chr15 50823963 50825281 -50555240 - MER52A LTR ERV1 0 1755 235 9955 167 21 11 chr15 50825281 50826955 -50553566 - L1MA3 LINE L1 -5862 1703 14 3976 183 55 11 chr15 50827025 50827879 -50552642 - L1MA8 LINE L1 -24 6267 5376 775 144 72 0 chr15 50828244 50828397 -50552124 + L1MA7 LINE L1 6122 6285 -6 612 248 115 32 chr15 50828918 50829136 -50551385 + MIR SINE MIR 22 257 -5 416 319 98 49 chr15 50831717 50832146 -50548375 - L1MC4a LINE L1 -1755 6053 5604 2149 73 7 0 chr15 50833348 50833623 -50546898 + AluY SINE Alu 35 311 0 21 0 0 0 chr15 50834192 50834213 -50546308 + AT_rich Low_complexity Low_complexity 1 21 0 457 262 24 8 chr15 50835083 50835209 -50545312 + MIR3 SINE MIR 81 208 0 2365 84 3 0 chr15 50835820 50836116 -50544405 - AluSc SINE Alu -12 297 1 279 377 115 6 chr15 50836161 50836344 -50544177 + MIR SINE MIR 36 238 -24 22 56 0 0 chr15 50836362 50836398 -50544123 + AT_rich Low_complexity Low_complexity 1 36 0 247 326 14 72 chr15 50836406 50836544 -50543977 + L2 LINE L2 3142 3271 -1 462 254 51 37 chr15 50836587 50836756 -50543765 - MER5B DNA MER1_type 0 178 24 1699 187 0 7 chr15 50837191 50837491 -50543030 - AluJo SINE Alu -10 302 5 455 323 15 8 chr15 50838640 50838770 -50541751 - L2 LINE L2 0 3313 3183 381 244 60 65 chr15 50839263 50839431 -50541090 + MIR SINE MIR 46 212 -50 258 324 65 9 chr15 50839691 50839799 -50540722 + MIR SINE MIR 23 136 -126 275 305 78 43 chr15 50839815 50840185 -50540336 - L1M4 LINE L1 -2412 3734 3352 333 282 70 6 chr15 50840293 50840449 -50540072 - L1M4 LINE L1 -2949 3197 3032 4161 169 13 3 chr15 50840714 50841473 -50539048 - L1P LINE L1 -1311 4835 4069 1628 81 22 0 chr15 50843123 50843346 -50537175 + L1PA11 LINE L1 5939 6166 -8 26 30 0 0 chr15 50844618 50844651 -50535870 + AT_rich Low_complexity Low_complexity 1 33 0 186 284 95 42 chr15 50845856 50845951 -50534570 - L2 LINE L2 -1 3271 3172 2419 83 0 6 chr15 50847171 50847483 -50533038 - AluY SINE Alu -1 310 1 550 314 67 27 chr15 50847659 50847882 -50532639 + MIR SINE MIR 24 255 -7 25 31 0 0 chr15 50848756 50848788 -50531733 + AT_rich Low_complexity Low_complexity 1 32 0 312 316 148 32 chr15 50849162 50849472 -50531049 - L3 LINE CR1 -11 1566 1221 22 0 0 0 chr15 50850047 50850069 -50530452 + AT_rich Low_complexity Low_complexity 1 22 0 215 308 103 20 chr15 50851022 50851168 -50529353 - MIR3 SINE MIR -31 177 20 3419 130 54 129 chr15 50851396 50852243 -50528278 - LTR1 LTR ERV1 0 785 2 215 208 21 0 chr15 50852534 50852582 -50527939 + MIR SINE MIR 106 154 -108 665 249 8 10 chr15 50852584 50852832 -50527689 - MER90 LTR ERV1 0 614 311 1227 198 86 0 chr15 50852832 50853075 -50527446 + Tigger7 DNA MER2_type 1 264 -469 427 240 10 31 chr15 50853112 50853208 -50527313 + Tigger7 DNA MER2_type 2389 2482 -5 895 300 36 4 chr15 50853220 50853500 -50527021 - MER90 LTR ERV1 -309 305 17 2036 126 0 17 chr15 50854800 50855094 -50525427 - AluSx SINE Alu -23 289 1 384 291 50 28 chr15 50855163 50855304 -50525217 - MIR SINE MIR -42 220 77 1638 234 23 3 chr15 50855306 50855657 -50524864 - MLT1A1 LTR MaLR -2 363 6 2151 129 36 33 chr15 50855714 50856077 -50524444 - THE1B LTR MaLR 0 364 1 228 303 15 0 chr15 50856494 50856560 -50523961 - L2 LINE L2 -18 3295 3229 357 181 143 9 chr15 50856655 50856760 -50523761 - MER63 DNA MER1_type -318 743 625 324 232 11 42 chr15 50856955 50857050 -50523471 - L1MC4 LINE L1 -1337 6705 6614 299 228 35 0 chr15 50857075 50857189 -50523332 + (TA)n Simple_repeat Simple_repeat 1 118 0 2161 71 4 7 chr15 50857939 50858268 -50522253 - AluY SINE Alu 0 328 1 226 215 31 15 chr15 50861495 50861560 -50518961 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 29 0 0 0 chr15 50861608 50861637 -50518884 + AT_rich Low_complexity Low_complexity 1 29 0 1648 215 28 85 chr15 50863067 50863667 -50516854 - L1ME1 LINE L1 -4 6231 5666 198 0 0 0 chr15 50863703 50863725 -50516796 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1073 218 31 8 chr15 50863745 50864006 -50516515 - L1ME1 LINE L1 -1994 4221 3955 367 349 62 25 chr15 50864034 50864275 -50516246 - L1ME1 LINE L1 -4727 1488 1239 1747 109 69 0 chr15 50864419 50864693 -50515828 - L1P4 LINE L1 -557 5609 5317 1057 160 0 36 chr15 50864696 50864890 -50515631 - L1PA11 LINE L1 0 6174 5988 3025 260 35 52 chr15 50864890 50865818 -50514703 - L1ME1 LINE L1 -5198 1198 293 404 39 0 0 chr15 50865818 50865869 -50514652 - L1PA3 LINE L1 -3 6152 6102 3025 260 35 52 chr15 50865869 50866124 -50514397 - L1ME1 LINE L1 -6103 293 35 23 54 0 0 chr15 50866237 50866274 -50514247 + AT_rich Low_complexity Low_complexity 1 37 0 428 245 117 61 chr15 50866275 50866471 -50514050 + L1ME1 LINE L1 395 601 -5795 329 255 21 21 chr15 50867413 50867507 -50513014 - MIR3 SINE MIR -7 201 108 22 35 0 0 chr15 50867765 50867794 -50512727 + AT_rich Low_complexity Low_complexity 1 29 0 192 304 14 29 chr15 50868616 50868685 -50511836 - L2 LINE L2 0 3272 3205 202 307 125 0 chr15 50868746 50868834 -50511687 + MIR SINE MIR 45 143 -65 180 0 0 0 chr15 50869324 50869344 -50511177 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 229 220 0 0 chr15 50871301 50871351 -50509170 + L1ME1 LINE L1 2037 2086 -4310 251 180 20 0 chr15 50871478 50871528 -50508993 - Alu SINE Alu -251 51 1 753 216 11 5 chr15 50871583 50871773 -50508748 + L1ME1 LINE L1 2186 2376 -4020 480 207 17 17 chr15 50871848 50871964 -50508557 + L1ME1 LINE L1 5418 5533 -702 305 287 33 40 chr15 50871988 50872235 -50508286 - L1MEc LINE L1 -4225 2171 1926 * 1407 247 117 70 chr15 50872231 50872875 -50507646 + L1ME1 LINE L1 5557 6230 -5 406 176 14 0 chr15 50874466 50874540 -50505981 + MER116 DNA Mariner 6 80 0 457 279 26 64 chr15 50875778 50876011 -50504510 + L1MC4 LINE L1 5600 5823 -1985 198 71 0 0 chr15 50876298 50876326 -50504195 + (TC)n Simple_repeat Simple_repeat 1 28 0 327 233 58 10 chr15 50876346 50876449 -50504072 - L1MC4 LINE L1 -1321 6721 6614 327 277 0 43 chr15 50876375 50876469 -50504052 + L1MC4 LINE L1 6614 6703 -1339 315 167 0 17 chr15 50876463 50876523 -50503998 - L1MC4 LINE L1 -1339 6703 6645 * 949 193 0 6 chr15 50876529 50876700 -50503821 - AluSg/x SINE Alu -28 284 115 1623 173 14 17 chr15 50879004 50879299 -50501222 + AluJo SINE Alu 3 296 -16 1996 103 0 61 chr15 50879826 50880156 -50500365 - AluY SINE Alu -1 310 1 515 256 83 42 chr15 50880744 50880912 -50499609 - MIR SINE MIR -38 224 50 623 259 45 8 chr15 50880916 50881178 -50499343 - L1MB7 LINE L1 -212 5968 5697 4776 183 107 2 chr15 50881379 50882302 -50498219 - LTR28 LTR ERV1 0 1020 1 216 318 0 0 chr15 50882323 50882408 -50498113 + (TA)n Simple_repeat Simple_repeat 1 85 0 315 122 0 0 chr15 50882755 50882804 -50497717 + (TG)n Simple_repeat Simple_repeat 2 50 0 183 315 62 62 chr15 50882816 50882946 -50497575 - MIR3 SINE MIR -37 171 42 196 264 27 82 chr15 50883085 50883195 -50497326 - MIR SINE MIR -37 225 122 37 62 0 0 chr15 50883814 50883879 -50496642 + AT_rich Low_complexity Low_complexity 1 65 0 23 0 0 0 chr15 50884787 50884810 -50495711 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr15 50884867 50884913 -50495608 + AT_rich Low_complexity Low_complexity 1 46 0 2048 135 0 10 chr15 50884936 50885240 -50495281 - AluSx SINE Alu -9 303 3 301 273 13 0 chr15 50886726 50886803 -50493718 - MLT1J LTR MaLR -325 186 109 324 336 38 0 chr15 50888605 50888736 -50491785 - LTR67 LTR ERVL 0 557 422 485 220 57 21 chr15 50889330 50889471 -50491050 + L1MC3 LINE L1 7640 7785 0 388 234 73 48 chr15 50890660 50890784 -50489737 - MIR SINE MIR -34 228 102 1519 258 107 43 chr15 50890795 50891496 -50489025 - MER20B DNA MER1_type -1 782 37 455 257 66 7 chr15 50891628 50891764 -50488757 - Charlie4 DNA MER1_type 0 1961 1818 469 190 149 0 chr15 50891770 50891891 -50488630 - Charlie4 DNA MER1_type -1708 253 115 277 183 52 0 chr15 50891939 50892092 -50488429 + (TA)n Simple_repeat Simple_repeat 2 162 0 983 252 78 90 chr15 50892434 50893061 -50487460 - HsTC2a DNA Tc2 -1239 661 41 8107 26 7 0 chr15 50893061 50894804 -50485717 - L1PA3 LINE L1 -2 6153 4405 983 252 78 90 chr15 50894804 50894842 -50485679 - HsTC2a DNA Tc2 -1859 41 4 205 364 27 32 chr15 50895072 50895259 -50485262 + L2 LINE L2 2827 3012 -260 272 293 50 66 chr15 50897534 50897715 -50482806 - MIR3 SINE MIR -23 185 8 212 407 21 7 chr15 50897950 50898090 -50482431 - L2 LINE L2 -567 2747 2606 187 394 92 35 chr15 50900255 50900397 -50480124 + L2 LINE L2 3123 3272 0 363 192 0 0 chr15 50900423 50900501 -50480020 - L1MA8 LINE L1 -5 6286 6209 637 244 23 60 chr15 50902061 50902278 -50478243 - MER63A DNA MER1_type 0 210 2 858 257 16 23 chr15 50902900 50903207 -50477314 + AluJb SINE Alu 6 310 -2 477 270 67 113 chr15 50903851 50904151 -50476370 + L2 LINE L2 3028 3313 0 255 260 52 0 chr15 50904174 50904251 -50476270 - MIR SINE MIR 0 262 182 2060 169 37 27 chr15 50904252 50904669 -50475852 + MSTB LTR MaLR 1 374 0 1270 219 39 42 chr15 50905750 50906033 -50474488 - AluJo SINE Alu -30 282 1 428 263 0 0 chr15 50908160 50908240 -50472281 + MER5A DNA MER1_type 106 185 -4 205 231 246 0 chr15 50908244 50908309 -50472212 - MIR SINE MIR -62 146 66 998 194 22 0 chr15 50908962 50909142 -50471379 + MER5A DNA MER1_type 6 189 0 259 313 94 62 chr15 50909143 50909271 -50471250 - MIR3 SINE MIR -63 145 14 6815 69 28 9 chr15 50909669 50911215 -50469306 - L1PA7 LINE L1 0 6154 4593 254 108 0 0 chr15 50911215 50911252 -50469269 + L1PA7 LINE L1 4557 4593 -1553 434 356 19 6 chr15 50911433 50911593 -50468928 - L3 LINE CR1 -27 1550 1389 1628 117 19 30 chr15 50912024 50912290 -50468231 - MER4A LTR ERV1 -29 635 373 767 185 58 58 chr15 50912424 50912629 -50467892 - MER58A DNA MER1_type 0 224 20 22 0 0 0 chr15 50912778 50912800 -50467721 + AT_rich Low_complexity Low_complexity 1 22 0 301 279 0 0 chr15 50912828 50912914 -50467607 + MER67D LTR ERV1 3 88 -426 646 102 0 0 chr15 50912946 50913034 -50467487 + MER67D LTR ERV1 63 150 -364 432 254 82 0 chr15 50915336 50915458 -50465063 - L2 LINE L2 0 3313 3182 1815 179 14 24 chr15 50915511 50915880 -50464641 - MLT1A1 LTR MaLR 0 365 1 5413 157 22 12 chr15 50916754 50918266 -50462255 - L1MA8 LINE L1 0 6291 4767 391 254 70 9 chr15 50918916 50919030 -50461491 - MIR3 SINE MIR -3 205 85 246 148 0 0 chr15 50919122 50919176 -50461345 + (TA)n Simple_repeat Simple_repeat 1 54 0 189 107 0 0 chr15 50919171 50919199 -50461322 + (CA)n Simple_repeat Simple_repeat 2 29 0 * 201 325 12 0 chr15 50920543 50920623 -50459898 + (TG)n Simple_repeat Simple_repeat 2 82 0 3422 151 6 32 chr15 50922169 50922827 -50457694 + L1MA8 LINE L1 5650 6290 -1 184 206 87 130 chr15 50922872 50922964 -50457557 + MIR SINE MIR 5 92 -170 265 361 44 13 chr15 50923412 50923570 -50456951 + L2 LINE L2 2624 2786 -528 555 348 138 33 chr15 50923634 50924459 -50456062 + L2 LINE L2 1817 2728 -586 261 275 43 14 chr15 50924992 50925061 -50455460 + L2 LINE L2 3193 3263 -9 5285 169 18 33 chr15 50925986 50927205 -50453316 - L1MA8 LINE L1 -1 6290 5088 30 59 0 0 chr15 50927715 50927766 -50452755 + AT_rich Low_complexity Low_complexity 1 51 0 188 306 28 14 chr15 50931779 50931851 -50448670 + MIR SINE MIR 77 149 -59 419 103 0 0 chr15 50932986 50933044 -50447477 + Alu SINE Alu 235 292 -20 212 320 143 40 chr15 50933058 50933233 -50447288 - L2 LINE L2 -1299 2015 1823 1467 143 27 0 chr15 50933240 50933464 -50447057 - MER30 DNA MER1_type 0 230 1 404 269 25 70 chr15 50933466 50933708 -50446813 + L1ME4a LINE L1 5755 5985 -136 2020 94 0 0 chr15 50933797 50934085 -50446436 - L1PA6 LINE L1 -2 6152 5865 214 271 14 14 chr15 50935012 50935082 -50445439 + GA-rich Low_complexity Low_complexity 2 71 0 525 250 120 26 chr15 50935191 50935383 -50445138 - MER63A DNA MER1_type 0 210 1 1455 219 133 27 chr15 50935662 50935913 -50444608 - MER69 DNA AcHobo -202 2324 2101 1647 179 58 128 chr15 50935913 50936466 -50444055 - MER67D LTR ERV1 0 514 1 1455 219 133 27 chr15 50936466 50936816 -50443705 - MER69 DNA AcHobo -425 2101 1659 440 229 107 15 chr15 50936813 50936944 -50443577 - MER69 DNA AcHobo -1083 143 1 * 1204 225 51 29 chr15 50937117 50937432 -50443089 + MER58B DNA MER1_type 20 341 0 180 0 0 0 chr15 50937465 50937485 -50443036 + (T)n Simple_repeat Simple_repeat 1 20 0 36 31 0 31 chr15 50937498 50937536 -50442985 + AT_rich Low_complexity Low_complexity 1 38 -25 1472 149 16 0 chr15 50937536 50937791 -50442730 - L1MA4 LINE L1 -14 6286 6028 36 31 0 31 chr15 50937791 50937817 -50442704 + AT_rich Low_complexity Low_complexity 38 63 0 228 148 0 93 chr15 50938319 50938373 -50442148 - MLT1J LTR MaLR -85 426 378 327 303 79 12 chr15 50938693 50938858 -50441663 - MLT1J LTR MaLR -335 176 1 294 317 0 48 chr15 50939548 50939652 -50440869 - MIR3 SINE MIR -11 197 99 400 283 138 6 chr15 50940215 50940374 -50440147 + MIR SINE MIR 3 182 -80 324 48 0 0 chr15 50940691 50940733 -50439788 + (TG)n Simple_repeat Simple_repeat 1 42 0 219 267 0 17 chr15 50941008 50941068 -50439453 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 1101 281 107 42 chr15 50943292 50943769 -50436752 + L2 LINE L2 1331 1838 -1476 1469 222 132 66 chr15 50943801 50944330 -50436191 - L1ME1 LINE L1 -21 6145 5653 186 43 0 0 chr15 50944330 50944353 -50436168 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1469 222 132 66 chr15 50944353 50944545 -50435976 - L1ME1 LINE L1 -513 5653 5475 979 144 22 0 chr15 50944545 50944725 -50435796 - L1MA8 LINE L1 -5 6286 6103 1469 222 132 66 chr15 50944725 50945418 -50435103 - L1ME1 LINE L1 -691 5475 4532 1478 286 127 23 chr15 50945619 50946224 -50434297 + L2 LINE L2 2132 2799 -515 511 232 221 6 chr15 50946305 50946486 -50434035 + L2 LINE L2 3094 3313 0 373 320 49 25 chr15 50947031 50947234 -50433287 - MIR SINE MIR -53 209 2 2272 91 0 3 chr15 50947246 50947553 -50432968 - AluSx SINE Alu -6 306 1 365 119 0 0 chr15 50947589 50947648 -50432873 + L1PA16 LINE L1 5418 5476 -692 5991 155 10 4 chr15 50947658 50948026 -50432495 - L1PB1 LINE L1 -2 6149 5785 216 0 0 0 chr15 50948026 50948050 -50432471 + (TA)n Simple_repeat Simple_repeat 2 25 0 5991 155 10 4 chr15 50948050 50949307 -50431214 - L1PB1 LINE L1 -366 5785 4518 3937 140 56 1 chr15 50949307 50949970 -50430551 + L1PA16 LINE L1 5456 6157 -9 2132 70 0 0 chr15 50950119 50950378 -50430143 + AluY SINE Alu 39 297 -14 414 318 23 28 chr15 50950462 50950676 -50429845 - L1M4 LINE L1 -748 5398 5186 838 224 33 38 chr15 50950754 50950964 -50429557 + AluJo SINE Alu 86 294 -18 810 288 97 46 chr15 50951267 50951618 -50428903 + L2 LINE L2 2431 2799 -515 511 232 221 6 chr15 50951699 50951880 -50428641 + L2 LINE L2 3094 3313 0 373 320 49 25 chr15 50952425 50952628 -50427893 - MIR SINE MIR -53 209 2 1883 108 0 4 chr15 50952640 50952917 -50427604 - AluSx SINE Alu -6 306 31 244 125 0 89 chr15 50952994 50953050 -50427471 + L1P4 LINE L1 5429 5479 -686 558 182 88 0 chr15 50953050 50953231 -50427290 - L1PB1 LINE L1 -2 6149 5953 24 53 0 0 chr15 50953502 50953540 -50426981 + AT_rich Low_complexity Low_complexity 1 38 0 2068 73 0 4 chr15 50953675 50953935 -50426586 + AluY SINE Alu 39 297 -14 414 318 23 28 chr15 50954019 50954233 -50426288 - L1M4 LINE L1 -748 5398 5186 838 224 33 38 chr15 50954311 50954521 -50426000 + AluJo SINE Alu 86 294 -18 209 0 97 0 chr15 50954716 50954747 -50425774 + T-rich Low_complexity Low_complexity 3 36 0 2171 95 10 0 chr15 50955082 50955376 -50425145 - AluSx SINE Alu -15 297 1 1729 194 25 73 chr15 50955603 50956112 -50424409 - MER31A LTR ERV1 0 485 1 1098 301 77 20 chr15 50956610 50957049 -50423472 + L2 LINE L2 2398 2861 -453 200 169 119 34 chr15 50957143 50957202 -50423319 + L2 LINE L2 3250 3313 0 254 307 30 10 chr15 50957322 50957423 -50423098 + MLT1J2 LTR MaLR 78 180 -270 340 243 19 58 chr15 50957507 50957610 -50422911 + MLT1I LTR MaLR 323 407 -2 229 342 62 26 chr15 50957650 50957843 -50422678 + L2 LINE L2 2699 2898 -416 350 344 39 0 chr15 50958235 50958363 -50422158 + MIR SINE MIR 1 133 -129 315 266 13 0 chr15 50958781 50958860 -50421661 - L2 LINE L2 -4 3309 3230 22 0 0 0 chr15 50958870 50958892 -50421629 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr15 50959340 50959361 -50421160 + AT_rich Low_complexity Low_complexity 1 21 0 238 229 0 0 chr15 50960110 50960158 -50420363 - L1ME LINE L1 -386 5735 5688 330 273 94 31 chr15 50960161 50960289 -50420232 + MLT1J LTR MaLR 181 316 -195 61 58 0 0 chr15 50960999 50961102 -50419419 + AT_rich Low_complexity Low_complexity 1 103 0 313 322 150 11 chr15 50961391 50961571 -50418950 + L1ME3A LINE L1 3639 3843 -2303 318 313 85 20 chr15 50961647 50961893 -50418628 + L1ME3A LINE L1 5620 5881 -290 2196 76 3 13 chr15 50961935 50962237 -50418284 - AluY SINE Alu -12 299 1 229 400 33 0 chr15 50963606 50963696 -50416825 + L2 LINE L2 3203 3295 -18 288 168 30 0 chr15 50964201 50964302 -50416219 + (TA)n Simple_repeat Simple_repeat 1 104 0 356 266 77 65 chr15 50965028 50965197 -50415324 - L2 LINE L2 -3 3310 3140 180 0 0 0 chr15 50965372 50965392 -50415129 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 615 283 80 12 chr15 50965550 50965801 -50414720 + L2 LINE L2 1910 2177 -1137 513 308 25 43 chr15 50965983 50966203 -50414318 + MIR SINE MIR 2 213 -49 2439 168 27 0 chr15 50966767 50967171 -50413350 + MSTC LTR MaLR 1 415 -13 2089 110 0 3 chr15 50967313 50967605 -50412916 - AluSx SINE Alu -21 291 1 25 31 0 0 chr15 50967627 50967659 -50412862 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr15 50967668 50967711 -50412810 + AT_rich Low_complexity Low_complexity 1 43 0 427 284 55 46 chr15 50967873 50968352 -50412169 - L1ME4a LINE L1 -157 5964 5481 1244 246 13 43 chr15 50968352 50968726 -50411795 - MLT1A1 LTR MaLR 0 365 3 427 284 55 46 chr15 50968726 50968847 -50411674 - L1ME4a LINE L1 -640 5481 5363 27 62 0 0 chr15 50969419 50969467 -50411054 + AT_rich Low_complexity Low_complexity 1 48 0 219 242 0 16 chr15 50969795 50969857 -50410664 + (TATG)n Simple_repeat Simple_repeat 3 63 0 10994 194 39 25 chr15 50969990 50972558 -50407963 - L1 LINE L1 -1215 5633 3030 1768 250 70 68 chr15 50972556 50973580 -50406941 - L1 LINE L1 -4230 2619 1594 * 477 346 76 39 chr15 50974074 50974508 -50406013 - L1 LINE L1 -5830 949 500 537 212 9 18 chr15 50974567 50974680 -50405841 + MER5A DNA MER1_type 54 165 -24 2121 129 0 0 chr15 50975050 50975353 -50405168 - AluSq SINE Alu -8 305 3 416 320 103 5 chr15 50975450 50975653 -50404868 - L2 LINE L2 -463 2851 2629 814 165 0 19 chr15 50977321 50977479 -50403042 - L1MA10 LINE L1 -1 6333 6179 201 74 0 0 chr15 50977695 50977722 -50402799 + (A)n Simple_repeat Simple_repeat 1 27 0 21 57 0 0 chr15 50979024 50979059 -50401462 + AT_rich Low_complexity Low_complexity 1 35 0 271 379 11 52 chr15 50979377 50979551 -50400970 + L2 LINE L2 3106 3272 0 956 219 20 0 chr15 50979699 50979900 -50400621 + MER3 DNA MER1_type 1 205 -4 270 233 326 12 chr15 50979987 50980073 -50400448 + MER96 DNA MER1_type? 63 175 0 31 88 0 0 chr15 50982756 50982836 -50397685 + AT_rich Low_complexity Low_complexity 1 80 0 1954 149 33 54 chr15 50982837 50983266 -50397255 - L1MA8 LINE L1 -5 6286 5867 2798 129 20 22 chr15 50983679 50984184 -50396337 + L1MA8 LINE L1 5783 6286 -5 275 266 26 18 chr15 50984532 50984645 -50395876 - L1ME3A LINE L1 -228 5942 5829 436 212 0 61 chr15 50984726 50984825 -50395696 + MER3 DNA MER1_type 1 93 -116 25 0 0 0 chr15 50984831 50984856 -50395665 + AT_rich Low_complexity Low_complexity 1 25 0 433 290 84 55 chr15 50984897 50985189 -50395332 - LTR16A LTR ERVL -69 381 59 7357 188 112 22 chr15 50985189 50986799 -50393722 - MER52A LTR ERV1 0 1755 1 433 290 84 55 chr15 50986799 50986855 -50393666 - LTR16A LTR ERVL -391 59 6 601 302 1 42 chr15 50986867 50987154 -50393367 - L1ME3A LINE L1 -337 5825 5547 356 263 0 0 chr15 50987335 50987411 -50393110 + MLT1E1 LTR MaLR 53 128 -465 637 258 24 0 chr15 50987446 50987613 -50392908 + MLT1E1 LTR MaLR 125 295 -359 1037 237 16 16 chr15 50987642 50987895 -50392626 + MLT1E1 LTR MaLR 401 653 -1 23 0 0 0 chr15 50988182 50988205 -50392316 + AT_rich Low_complexity Low_complexity 1 23 0 396 163 62 0 chr15 50988519 50988599 -50391922 - LTR16C LTR ERVL 0 491 407 852 263 40 43 chr15 50988797 50989101 -50391420 + MLT1C LTR MaLR 53 355 -112 605 217 109 59 chr15 50989096 50989339 -50391182 - MLT1G1 LTR MaLR -297 298 1 * 322 217 0 0 chr15 50989345 50989405 -50391116 - MLT1J1 LTR MaLR -384 62 3 1650 194 45 20 chr15 50989486 50989842 -50390679 - MLT1A1 LTR MaLR 0 365 1 381 311 37 70 chr15 50990020 50990261 -50390260 - L3 LINE CR1 -157 1420 1188 27 0 0 0 chr15 50990498 50990525 -50389996 + AT_rich Low_complexity Low_complexity 1 27 0 210 330 57 9 chr15 50990581 50990687 -50389834 - MIR SINE MIR -64 144 34 25 0 0 0 chr15 50990721 50990746 -50389775 + AT_rich Low_complexity Low_complexity 1 25 0 370 319 0 36 chr15 50991541 50991679 -50388842 - MER5A DNA MER1_type -56 133 1 4510 188 34 17 chr15 50991801 50993647 -50386874 - L1MA8 LINE L1 -4 6287 4407 12300 194 34 28 chr15 50993729 50994248 -50386273 + L1MA4A LINE L1 2510 3025 -3278 1448 193 39 35 chr15 50994248 50994559 -50385962 + AluJb SINE Alu 1 312 0 12300 194 34 28 chr15 50994559 50997811 -50382710 + L1MA4A LINE L1 3025 6303 0 203 189 0 0 chr15 50998167 50998204 -50382317 + MIR SINE MIR 118 154 -108 1831 236 10 2 chr15 50998219 50998669 -50381852 - MER89 LTR ERV1 -2 557 5 1529 179 90 75 chr15 50999039 50999504 -50381017 - MER41B LTR ERV1 -23 612 141 188 368 81 29 chr15 51000687 51000861 -50379660 + L2 LINE L2 2127 2309 -1005 247 329 33 46 chr15 51000945 51001097 -50379424 + L2 LINE L2 2699 2848 -466 586 283 21 27 chr15 51001230 51001417 -50379104 + MER5A DNA MER1_type 2 187 -2 400 200 70 0 chr15 51001419 51001519 -50379002 - MER103 DNA DNA -49 117 11 2136 136 0 0 chr15 51001677 51001979 -50378542 - AluSx SINE Alu -10 302 1 28 0 0 0 chr15 51003367 51003395 -50377126 + AT_rich Low_complexity Low_complexity 1 28 0 221 274 49 49 chr15 51004462 51004564 -50375957 + MIR SINE MIR 5 106 -156 186 103 0 0 chr15 51004582 51004611 -50375910 + (CA)n Simple_repeat Simple_repeat 1 29 0 530 261 0 45 chr15 51005708 51005842 -50374679 + MIR3 SINE MIR 76 203 -5 325 331 26 13 chr15 51007320 51007474 -50373047 + MER5A DNA MER1_type 7 162 -27 191 236 109 0 chr15 51007727 51007782 -50372739 + L2 LINE L2 3192 3252 -61 23 33 0 0 chr15 51007908 51007938 -50372583 + AT_rich Low_complexity Low_complexity 1 30 0 5282 255 84 38 chr15 51008049 51010936 -50369585 - L1ME1 LINE L1 -5 6161 3112 535 282 57 61 chr15 51011915 51012440 -50368081 - L1MC5 LINE L1 -67 7894 7372 256 306 116 0 chr15 51012470 51012617 -50367904 - L1MC4 LINE L1 -555 7487 7324 1071 45 0 0 chr15 51012710 51012843 -50367678 - L1PA5 LINE L1 -6 6148 6016 950 18 0 0 chr15 51012843 51012953 -50367568 + L1PA4 LINE L1 5771 5880 -275 361 250 6 81 chr15 51012948 51013108 -50367413 - L1MC5 LINE L1 -783 7178 7031 * 235 200 0 92 chr15 51013178 51013243 -50367278 - L2 LINE L2 -1 3312 3254 543 253 49 12 chr15 51014554 51014716 -50365805 - MIR SINE MIR -37 225 58 796 203 0 0 chr15 51015225 51015378 -50365143 + FRAM SINE Alu 13 165 -11 1634 140 40 20 chr15 51015393 51015693 -50364828 + AluJo SINE Alu 1 306 -6 624 264 47 59 chr15 51017032 51017286 -50363235 - MIR SINE MIR -10 252 2 718 233 79 82 chr15 51017945 51018348 -50362173 - MER39 LTR ERV1 0 707 306 377 300 9 0 chr15 51018374 51018484 -50362037 - MER34 LTR ERV1 -428 114 4 2488 65 3 0 chr15 51019873 51020182 -50360339 + AluY SINE Alu 1 310 -1 1902 158 3 0 chr15 51020692 51021002 -50359519 + AluY SINE Alu 1 311 0 314 280 24 24 chr15 51021589 51021714 -50358807 - L1MC5 LINE L1 -1897 5911 5787 323 217 221 60 chr15 51021851 51022068 -50358453 - L1MC5 LINE L1 -2301 5507 5256 5171 158 33 3 chr15 51022143 51023672 -50356849 - L1PA15 LINE L1 -2 6163 4608 2627 245 62 27 chr15 51023672 51024816 -50355705 - L1ME LINE L1 -584 5582 4392 1128 112 0 0 chr15 51024844 51024996 -50355525 + AluSg/x SINE Alu 149 300 -12 1472 148 89 43 chr15 51024997 51025322 -50355199 - THE1C LTR MaLR -35 340 1 1930 227 68 25 chr15 51025322 51026001 -50354520 - L1ME LINE L1 -1749 4397 3690 2082 121 10 7 chr15 51027137 51027434 -50353087 + AluSx SINE Alu 1 298 -14 450 325 128 68 chr15 51028447 51029030 -50351491 - L2 LINE L2 -4 3268 2658 289 333 44 49 chr15 51029462 51029645 -50350876 + L2 LINE L2 2296 2477 -837 * 453 343 166 24 chr15 51029629 51030008 -50350513 + L2 LINE L2 2881 3313 0 302 222 69 0 chr15 51030490 51030562 -50349959 + L2 LINE L2 3191 3267 -5 806 123 0 0 chr15 51030690 51030830 -50349691 - AluSc SINE Alu 0 304 165 263 235 0 0 chr15 51032917 51032968 -50347553 - MLT1F LTR MaLR 0 542 492 1192 281 37 3 chr15 51032996 51033345 -50347176 - MLT1F LTR MaLR -181 361 1 23 0 0 0 chr15 51033539 51033562 -50346959 + AT_rich Low_complexity Low_complexity 1 23 0 199 187 0 173 chr15 51033710 51033785 -50346736 - MER5A DNA MER1_type 0 189 128 559 247 209 0 chr15 51033808 51033966 -50346555 - MIR SINE MIR -16 246 56 806 218 41 6 chr15 51034232 51034402 -50346119 + MER5A DNA MER1_type 14 189 0 329 273 143 37 chr15 51034614 51034775 -50345746 - L2 LINE L2 -2 3311 3134 899 342 71 42 chr15 51034787 51035633 -50344888 + L2 LINE L2 2316 3193 -120 225 0 0 0 chr15 51035732 51035757 -50344764 + (CA)n Simple_repeat Simple_repeat 2 26 0 292 202 48 19 chr15 51035831 51035935 -50344586 + (TA)n Simple_repeat Simple_repeat 2 108 0 390 205 13 0 chr15 51035937 51036015 -50344506 + MER112 DNA MER1_type 180 258 -2 22 56 0 0 chr15 51036078 51036114 -50344407 + AT_rich Low_complexity Low_complexity 1 36 0 1078 195 72 81 chr15 51038522 51038967 -50341554 - MLT1D LTR MaLR -2 565 57 1236 297 63 41 chr15 51038968 51039459 -50341062 - MLT1E LTR MaLR -89 504 3 493 301 142 18 chr15 51039462 51039688 -50340833 + MIR SINE MIR 3 256 -6 2641 96 3 3 chr15 51039922 51040277 -50340244 + THE1A LTR MaLR 1 355 0 27 73 0 0 chr15 51040403 51040458 -50340063 + AT_rich Low_complexity Low_complexity 1 55 0 516 279 58 42 chr15 51040551 51040845 -50339676 - HAL1b LINE L1 -732 616 343 577 310 130 11 chr15 51040981 51041471 -50339050 + L2 LINE L2 2705 3272 0 407 219 76 0 chr15 51041864 51041969 -50338552 - L1MB7 LINE L1 -79 6105 5993 323 167 0 0 chr15 51041970 51042030 -50338491 + L1MB8 LINE L1 6107 6166 -12 206 256 156 0 chr15 51043310 51043400 -50337121 - MIR SINE MIR -75 187 84 676 221 58 5 chr15 51044582 51044806 -50335715 + L1MA4 LINE L1 6056 6300 0 374 284 138 0 chr15 51044881 51044997 -50335524 - L2 LINE L2 -3 3269 3138 223 371 62 0 chr15 51045085 51045182 -50335339 - L2 LINE L2 -190 3082 2980 17122 95 12 3 chr15 51045190 51048254 -50332267 + L1PA7 LINE L1 2801 5888 -266 10104 179 39 21 chr15 51048363 51049371 -50331150 + L1MA7 LINE L1 3103 4091 -2200 801 262 66 30 chr15 51049371 51049703 -50330818 - MER2 DNA MER2_type 0 344 1 10104 179 39 21 chr15 51049703 51051735 -50328786 + L1MA7 LINE L1 4091 6202 -89 362 244 22 22 chr15 51051939 51052029 -50328492 + L2 LINE L2 3168 3257 -56 359 289 22 30 chr15 51052026 51052161 -50328360 + MER5A DNA MER1_type 55 188 -1 * 3032 135 36 2 chr15 51052691 51053217 -50327304 - L1MA4 LINE L1 -11 6289 5746 305 287 134 42 chr15 51054855 51055071 -50325450 + L1MB4 LINE L1 5310 5545 -2263 754 297 20 8 chr15 51055125 51055374 -50325147 + L2 LINE L2 638 889 -2425 4708 113 24 82 chr15 51055391 51056264 -50324257 - LTR12 LTR ERV1 0 826 5 2364 193 38 34 chr15 51056280 51056891 -50323630 - pTR5 LTR ERV1 -1094 1344 732 1474 289 98 41 chr15 51056965 51057599 -50322922 + L2 LINE L2 1030 1699 -1615 1281 170 49 0 chr15 51057743 51057967 -50322554 - MER46A DNA MER2_type 0 236 2 33 0 0 0 chr15 51058039 51058072 -50322449 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr15 51058192 51058216 -50322305 + AT_rich Low_complexity Low_complexity 1 24 0 1264 152 0 0 chr15 51058290 51058488 -50322033 + L1PB1 LINE L1 1 198 -6665 * 13074 169 34 12 chr15 51058485 51062523 -50317998 + L1PB1 LINE L1 996 4945 -1922 405 0 0 0 chr15 51062523 51062568 -50317953 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 13074 169 34 12 chr15 51062568 51063920 -50316601 + L1PB1 LINE L1 4945 6266 -601 297 0 0 0 chr15 51063920 51063953 -50316568 + (TA)n Simple_repeat Simple_repeat 2 34 0 * 378 0 0 0 chr15 51063952 51063994 -50316527 + (GA)n Simple_repeat Simple_repeat 2 43 0 13074 169 34 12 chr15 51063953 51064321 -50316200 + L1PB1 LINE L1 6266 6850 -17 318 50 0 0 chr15 51064324 51064364 -50316157 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 1418 157 15 110 chr15 51064366 51064592 -50315929 + L1MB4 LINE L1 5811 5982 -198 2000 110 0 4 chr15 51064592 51064864 -50315657 - AluSq SINE Alu -42 271 1 1418 157 15 110 chr15 51064864 51065045 -50315476 + L1MB4 LINE L1 5982 6179 -1 1048 137 78 4 chr15 51065047 51065351 -50315170 + L1MB5 LINE L1 5812 6169 -2 385 321 41 7 chr15 51065429 51065700 -50314821 + L1ME LINE L1 5534 5813 -308 10332 216 54 39 chr15 51065703 51068220 -50312301 + L1M2 LINE L1 1 2556 -4293 41526 62 9 1 chr15 51068241 51074337 -50306184 + L1PA5 LINE L1 3 6147 -7 22 35 0 0 chr15 51074340 51074369 -50306152 + AT_rich Low_complexity Low_complexity 1 29 0 1577 196 9 11 chr15 51074369 51074792 -50305729 + L1M2 LINE L1 2587 3010 -3838 285 152 13 25 chr15 51074794 51074873 -50305648 + (TA)n Simple_repeat Simple_repeat 2 79 0 7264 210 52 8 chr15 51074873 51076637 -50303884 + L1M2 LINE L1 2960 4814 -2034 1780 124 106 4 chr15 51076637 51076912 -50303609 + AluSx SINE Alu 1 303 -9 7264 210 52 8 chr15 51076912 51077250 -50303271 + L1M2 LINE L1 4814 5136 -1712 6281 169 14 21 chr15 51077375 51079075 -50301446 + L1MA4A LINE L1 4277 5960 -343 1723 163 38 33 chr15 51079075 51079443 -50301078 - THE1C LTR MaLR -1 374 5 6281 169 14 21 chr15 51079443 51079781 -50300740 + L1MA4A LINE L1 5960 6299 -4 28 29 0 0 chr15 51079914 51079949 -50300572 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr15 51080466 51080487 -50300034 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr15 51082494 51082522 -50297999 + AT_rich Low_complexity Low_complexity 1 28 0 4339 72 0 5 chr15 51082581 51083152 -50297369 - L1PA8 LINE L1 0 6172 5605 2404 106 0 21 chr15 51083221 51083652 -50296869 - L1PA8 LINE L1 -543 5611 5194 516 273 0 0 chr15 51083780 51083919 -50296602 - L1M4c LINE L1 -4800 1584 1446 1705 130 17 23 chr15 51083939 51084238 -50296283 - L1PA16 LINE L1 -9 6157 5861 256 0 24 49 chr15 51084269 51084310 -50296211 + (TTTTA)n Simple_repeat Simple_repeat 4 43 0 2541 141 70 12 chr15 51084310 51084798 -50295723 - L1MA4 LINE L1 -14 6286 5771 292 179 104 28 chr15 51084802 51084815 -50295706 - L1MA4A LINE L1 0 6303 6291 3350 157 108 49 chr15 51084815 51085780 -50294741 - L1MA4A LINE L1 0 6163 5256 2000 188 72 7 chr15 51085780 51086185 -50294336 - MSTB1 LTR MaLR -1 431 1 3350 157 108 49 chr15 51086185 51086361 -50294160 - L1MA4A LINE L1 -907 5256 5092 387 0 0 0 chr15 51086361 51086404 -50294117 + (TTA)n Simple_repeat Simple_repeat 3 45 0 24409 30 1 0 chr15 51086404 51090113 -50290408 - L1PA3 LINE L1 -18 6137 2427 3350 157 108 49 chr15 51090113 51090203 -50290318 - L1MA4A LINE L1 -1070 5093 4828 7382 226 28 116 chr15 51090254 51093814 -50286707 - L1 LINE L1 -3595 3253 5 25 75 0 0 chr15 51094013 51094066 -50286455 + AT_rich Low_complexity Low_complexity 1 53 0 289 328 127 22 chr15 51094340 51094474 -50286047 + MER5A DNA MER1_type 1 148 -41 1296 149 0 1 chr15 51094567 51094835 -50285686 - AluSc SINE Alu 0 307 1 257 132 0 19 chr15 51095005 51095058 -50285463 + (CA)n Simple_repeat Simple_repeat 2 53 0 236 233 0 0 chr15 51096333 51096376 -50284145 + (TCCA)n Simple_repeat Simple_repeat 4 46 0 1081 271 57 62 chr15 51096518 51097208 -50283313 + L2 LINE L2 2549 3244 -69 1773 156 36 7 chr15 51097208 51097331 -50283190 + AluSx SINE Alu 1 119 -193 351 0 0 0 chr15 51097331 51097370 -50283151 + (CA)n Simple_repeat Simple_repeat 2 40 0 1773 156 36 7 chr15 51097370 51097547 -50282974 + AluSx SINE Alu 119 310 -2 1081 271 57 62 chr15 51097547 51097617 -50282904 + L2 LINE L2 3244 3313 0 2092 154 0 0 chr15 51098565 51098877 -50281644 + AluSx SINE Alu 1 312 0 198 191 0 0 chr15 51100559 51100601 -50279920 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 425 225 22 0 chr15 51100716 51100805 -50279716 - MLT1J1 LTR MaLR -355 91 1 200 385 0 24 chr15 51102154 51102237 -50278284 + L2 LINE L2 3191 3271 -1 1205 253 68 18 chr15 51102306 51102748 -50277773 - Zaphod DNA AcHobo 0 4031 3568 2761 238 63 86 chr15 51102755 51102801 -50277720 - Zaphod DNA AcHobo -2889 1142 1096 2209 53 42 7 chr15 51102801 51103085 -50277436 + AluY SINE Alu 1 294 -17 2761 238 63 86 chr15 51103085 51104207 -50276314 - Zaphod DNA AcHobo -2935 1096 1 221 146 21 0 chr15 51104443 51104491 -50276030 + CT-rich Low_complexity Low_complexity 3 51 0 404 206 0 28 chr15 51105219 51105326 -50275195 + L1PA11 LINE L1 6069 6172 -2 22 0 0 0 chr15 51105657 51105679 -50274842 + AT_rich Low_complexity Low_complexity 1 22 0 238 285 97 59 chr15 51106329 51106515 -50274006 - L2 LINE L2 -18 3295 3103 29 47 0 0 chr15 51106723 51106766 -50273755 + AT_rich Low_complexity Low_complexity 1 43 0 1491 149 42 7 chr15 51106999 51107288 -50273233 + L1MA8 LINE L1 5987 6285 -6 4075 71 3 39 chr15 51107465 51108058 -50272463 + L1PB1 LINE L1 5580 6151 0 316 325 19 122 chr15 51108323 51108594 -50271927 + L1MEc LINE L1 167 409 -5987 395 239 15 54 chr15 51108749 51108879 -50271642 - L1ME3A LINE L1 -146 6024 5900 648 248 61 14 chr15 51109329 51109624 -50270897 + L1MEc LINE L1 2768 3076 -3139 644 271 122 5 chr15 51109659 51110036 -50270485 + L1M4 LINE L1 4305 4725 -1421 2493 148 34 2 chr15 51110089 51110500 -50270021 - MSTA LTR MaLR -4 424 1 374 294 37 25 chr15 51110507 51110670 -50269851 + L1M4 LINE L1 4791 4955 -1191 22 0 0 0 chr15 51111427 51111449 -50269072 + AT_rich Low_complexity Low_complexity 1 22 0 205 316 175 70 chr15 51113218 51113389 -50267132 - L2 LINE L2 -5 3267 3079 207 154 19 19 chr15 51114421 51114473 -50266048 + A-rich Low_complexity Low_complexity 3 54 0 1583 100 26 13 chr15 51114506 51114736 -50265785 - AluSg/x SINE Alu -5 305 73 239 346 0 0 chr15 51115271 51115352 -50265169 - L2 LINE L2 -12 3260 3180 311 267 144 14 chr15 51115399 51115545 -50264976 - MIR SINE MIR 0 262 98 776 241 21 16 chr15 51116419 51116606 -50263915 - MER5A DNA MER1_type -1 188 1 351 39 39 0 chr15 51116819 51116870 -50263651 - AluY SINE Alu 0 300 248 22 0 0 0 chr15 51119841 51119863 -50260658 + AT_rich Low_complexity Low_complexity 1 22 0 2181 109 3 3 chr15 51119994 51120297 -50260224 + AluSq SINE Alu 1 303 -10 24 0 0 0 chr15 51120413 51120437 -50260084 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr15 51120483 51120517 -50260004 + AT_rich Low_complexity Low_complexity 1 34 0 257 291 223 10 chr15 51121505 51121608 -50258913 + MER5B DNA MER1_type 2 126 -52 21 36 0 0 chr15 51122393 51122421 -50258100 + AT_rich Low_complexity Low_complexity 1 28 0 286 283 0 11 chr15 51124857 51124949 -50255572 + T-rich Low_complexity Low_complexity 2 92 0 209 329 12 24 chr15 51126195 51126280 -50254241 + MER5A DNA MER1_type 105 188 -1 883 244 0 21 chr15 51127380 51127573 -50252948 - MER5A DNA MER1_type 0 189 1 2047 134 13 3 chr15 51127598 51127897 -50252624 + AluSx SINE Alu 1 302 -10 413 318 30 30 chr15 51128743 51128875 -50251646 - L2 LINE L2 -4 3268 3137 211 344 0 32 chr15 51130167 51130260 -50250261 + MIR3 SINE MIR 113 202 -6 590 351 123 20 chr15 51131120 51131769 -50248752 - L2 LINE L2 -555 2759 2044 2163 87 0 24 chr15 51133273 51133598 -50246923 + AluSx SINE Alu 1 318 0 180 111 0 0 chr15 51136497 51136524 -50243997 + (A)n Simple_repeat Simple_repeat 1 27 0 2344 67 13 41 chr15 51137534 51137849 -50242672 + AluY SINE Alu 1 306 -5 24 0 0 0 chr15 51138914 51138938 -50241583 + AT_rich Low_complexity Low_complexity 1 24 0 216 255 0 0 chr15 51139595 51139646 -50240875 + T-rich Low_complexity Low_complexity 1 51 0 448 250 46 9 chr15 51140569 51140677 -50239844 + L2 LINE L2 3202 3313 0 956 155 13 80 chr15 51141232 51141471 -50239050 - L1MA9 LINE L1 -7 6305 6083 1210 271 259 31 chr15 51141473 51142420 -50238101 - L2 LINE L2 -16 3297 2075 678 209 44 11 chr15 51142420 51142602 -50237919 - MER53 DNA DNA 0 189 2 1210 271 259 31 chr15 51142602 51142723 -50237798 - L2 LINE L2 -1238 2075 1983 1772 168 8 37 chr15 51142734 51143109 -50237412 - L1MB8 LINE L1 0 6178 5815 1550 98 4 8 chr15 51143109 51143335 -50237186 - L1PA13 LINE L1 -1 6162 5930 2522 87 3 0 chr15 51143335 51143681 -50236840 + L1PA13 LINE L1 5565 5911 -257 353 330 43 0 chr15 51144611 51144726 -50235795 - L2 LINE L2 -9 3304 3185 220 372 0 13 chr15 51144828 51144906 -50235615 - MER5B DNA MER1_type -68 110 34 3196 208 23 33 chr15 51145152 51145886 -50234635 + L1PA7 LINE L1 1268 1994 -4793 2486 244 92 4 chr15 51145887 51146622 -50233899 + L1PA7 LINE L1 2531 3330 -3467 9249 200 2 19 chr15 51146768 51149593 -50230928 + L1PA7 LINE L1 3988 6801 -4 23 0 0 0 chr15 51149811 51149834 -50230687 + AT_rich Low_complexity Low_complexity 1 23 0 1948 40 0 4 chr15 51151325 51151553 -50228968 - AluY SINE Alu 0 311 85 480 239 43 8 chr15 51151930 51152047 -50228474 - L2 LINE L2 0 3313 3193 414 335 31 11 chr15 51153328 51153519 -50227002 + MIR SINE MIR 7 201 -61 211 288 27 14 chr15 51154030 51154103 -50226418 + MIR SINE MIR 57 130 -78 549 329 77 52 chr15 51154116 51154620 -50225901 - MLT1K LTR MaLR -2 586 70 24 0 0 0 chr15 51155068 51155092 -50225429 + AT_rich Low_complexity Low_complexity 1 24 0 307 172 61 10 chr15 51155340 51155439 -50225082 + (TATAA)n Simple_repeat Simple_repeat 1 104 0 302 199 29 6 chr15 51155445 51155616 -50224905 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 395 152 29 47 chr15 51155798 51156244 -50224277 + (TTATA)n Simple_repeat Simple_repeat 1 437 0 22 0 0 0 chr15 51156270 51156292 -50224229 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr15 51156629 51156662 -50223859 + AT_rich Low_complexity Low_complexity 1 33 0 482 414 18 6 chr15 51157090 51157259 -50223262 + MER91A DNA MER1_type 5 175 -21 354 308 50 0 chr15 51157329 51157449 -50223072 + L2 LINE L2 3181 3306 -7 24 53 0 0 chr15 51157664 51157702 -50222819 + AT_rich Low_complexity Low_complexity 1 38 0 306 53 386 0 chr15 51158569 51158626 -50221895 - MADE1 DNA Mariner -1 79 1 23 68 0 0 chr15 51159561 51159605 -50220916 + AT_rich Low_complexity Low_complexity 1 44 0 3306 31 0 0 chr15 51160800 51161190 -50219331 + L1PA3 LINE L1 5766 6155 0 284 331 23 30 chr15 51161192 51161325 -50219196 - MIR SINE MIR -112 150 19 297 283 116 36 chr15 51163710 51163848 -50216673 + MIR SINE MIR 114 262 0 1310 340 90 28 chr15 51165342 51166244 -50214277 - L3 LINE CR1 -3 1574 617 314 311 0 17 chr15 51167615 51167734 -50212787 + MER103 DNA DNA 2 118 -48 429 349 119 11 chr15 51168017 51168278 -50212243 + L2 LINE L2 3023 3311 -2 747 255 119 20 chr15 51168427 51168780 -50211741 - LTR37A LTR ERV1 0 426 39 219 146 0 0 chr15 51168855 51168896 -50211625 + (TCC)n Simple_repeat Simple_repeat 2 42 0 29 0 0 0 chr15 51171087 51171116 -50209405 + AT_rich Low_complexity Low_complexity 1 29 0 1769 159 75 0 chr15 51172209 51172529 -50207992 + MER2 DNA MER2_type 1 344 0 228 232 18 0 chr15 51172529 51172585 -50207936 + (TG)n Simple_repeat Simple_repeat 2 58 0 289 318 9 0 chr15 51173738 51173845 -50206676 - ERVL LTR ERVL -384 5380 5273 2600 113 3 0 chr15 51174106 51174469 -50206052 - THE1B LTR MaLR 0 364 1 876 257 49 93 chr15 51174647 51175079 -50205442 + LTR16C LTR ERVL 72 484 -7 1250 116 21 0 chr15 51176256 51176445 -50204076 - L1MA1 LINE L1 -41 6261 6069 327 338 0 0 chr15 51177069 51177149 -50203372 + MIR3 SINE MIR 114 193 -15 2077 120 10 10 chr15 51177568 51177869 -50202652 - AluSx SINE Alu -11 301 1 205 319 0 22 chr15 51178024 51178115 -50202406 + T-rich Low_complexity Low_complexity 2 90 0 232 227 0 0 chr15 51178689 51178733 -50201788 - L2 LINE L2 -3 3269 3226 987 208 19 19 chr15 51178799 51179015 -50201506 + MER20 DNA MER1_type 3 218 -1 1795 110 0 0 chr15 51180172 51180432 -50200089 - AluSx SINE Alu 0 307 48 21 0 0 0 chr15 51180704 51180725 -50199796 + AT_rich Low_complexity Low_complexity 1 21 0 296 358 73 30 chr15 51181904 51182069 -50198452 + L2 LINE L2 3101 3272 0 180 242 0 0 chr15 51182498 51182531 -50197990 - L2 LINE L2 -26 3246 3214 883 126 0 101 chr15 51183857 51184016 -50196505 + AluSq/x SINE Alu 7 149 -164 291 337 77 12 chr15 51184122 51184291 -50196230 - L2 LINE L2 -642 2672 2493 34 0 0 0 chr15 51184454 51184488 -50196033 + AT_rich Low_complexity Low_complexity 1 34 0 2203 105 3 7 chr15 51184621 51184926 -50195595 + AluY SINE Alu 1 304 -7 555 279 109 6 chr15 51185655 51185838 -50194683 + MIR SINE MIR 61 262 0 215 300 0 17 chr15 51186083 51186143 -50194378 - MIR SINE MIR -3 259 201 205 254 0 111 chr15 51186089 51186152 -50194369 - L2 LINE L2 -14 3258 3203 * 202 195 24 0 chr15 51186450 51186491 -50194030 + MER5A DNA MER1_type 6 47 -142 1704 197 22 25 chr15 51186491 51186857 -50193664 - MLT1A2 LTR MaLR -9 365 1 516 244 102 0 chr15 51186859 51186986 -50193535 + MER5A DNA MER1_type 49 188 -1 280 196 0 33 chr15 51187168 51187260 -50193261 + GA-rich Low_complexity Low_complexity 1 89 0 216 277 175 42 chr15 51187434 51187600 -50192921 - L2 LINE L2 -896 2418 2231 821 199 18 12 chr15 51188110 51188276 -50192245 - MER5A DNA MER1_type -22 167 1 2475 173 118 2 chr15 51188787 51189364 -50191157 - MER73 LTR ERVL 0 644 1 292 309 124 21 chr15 51189868 51190037 -50190484 - MIR SINE MIR -41 221 38 2401 161 24 0 chr15 51190268 51190684 -50189837 + MSTB LTR MaLR 1 426 0 3340 172 39 0 chr15 51190754 51191364 -50189157 - MER67C LTR ERV1 0 710 77 1264 236 38 54 chr15 51191397 51191792 -50188729 - MLT1B LTR MaLR -2 591 1 802 262 37 0 chr15 51193456 51193643 -50186878 + MIR SINE MIR 53 246 -16 13861 186 30 14 chr15 51193648 51194434 -50186087 - L1PB1 LINE L1 0 6867 6096 2460 94 0 0 chr15 51194434 51194742 -50185779 - AluSg SINE Alu -2 308 1 13861 186 30 14 chr15 51194742 51195673 -50184848 - L1PB1 LINE L1 -771 6096 5182 189 0 0 0 chr15 51195673 51195694 -50184827 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 13861 186 30 14 chr15 51195694 51199416 -50181105 - L1PB1 LINE L1 -1685 5182 1332 2147 179 102 9 chr15 51199440 51199892 -50180629 - L1PB1 LINE L1 -5707 1156 663 536 254 74 33 chr15 51199906 51199944 -50180577 - L1PB1 LINE L1 -6593 270 235 4735 45 21 0 chr15 51199944 51200519 -50180002 - LTR14C LTR ERVK 0 587 1 536 254 74 33 chr15 51200519 51200724 -50179797 - L1PB1 LINE L1 -6628 235 17 2056 187 65 5 chr15 51201739 51202140 -50178381 + MSTB LTR MaLR 2 426 0 260 175 0 0 chr15 51202165 51202205 -50178316 - MER1B DNA MER1_type -1 332 293 1477 142 9 0 chr15 51202227 51202438 -50178083 - MER1B DNA MER1_type -84 213 1 360 281 105 97 chr15 51203057 51203250 -50177271 + L3 LINE CR1 1341 1538 -39 1976 117 28 7 chr15 51203250 51203540 -50176981 - AluSx SINE Alu -16 296 1 360 281 105 97 chr15 51203540 51203574 -50176947 + L3 LINE CR1 1538 1570 -7 295 176 0 44 chr15 51204310 51204378 -50176143 - MIR SINE MIR -98 164 100 208 320 90 30 chr15 51204820 51205020 -50175501 - L3b LINE CR1 -153 1430 1219 195 352 39 8 chr15 51205507 51205635 -50174886 - L2 LINE L2 -309 2963 2832 318 325 57 41 chr15 51205909 51206032 -50174489 - L2 LINE L2 0 3313 3189 1430 118 50 5 chr15 51206032 51206252 -50174269 + MER30 DNA MER1_type 1 230 0 286 249 160 28 chr15 51208009 51208222 -50172299 - L1MC5 LINE L1 -435 7526 7286 1803 138 21 7 chr15 51208826 51209115 -50171406 + AluSx SINE Alu 1 293 -19 297 143 0 4 chr15 51210139 51210208 -50170313 + L1PA10 LINE L1 6093 6160 -8 404 310 41 29 chr15 51210725 51210896 -50169625 - MER5B DNA MER1_type -2 176 4 398 324 146 0 chr15 51211856 51212041 -50168480 - MIR SINE MIR -48 214 3 184 392 54 0 chr15 51212070 51212144 -50168377 - L2 LINE L2 -44 3228 3151 26 64 0 0 chr15 51212315 51212362 -50168159 + AT_rich Low_complexity Low_complexity 1 47 0 1994 126 133 16 chr15 51212798 51213180 -50167341 - MSTA LTR MaLR -1 427 1 344 283 152 22 chr15 51213496 51213680 -50166841 - MIR SINE MIR -6 256 49 2609 108 11 0 chr15 51214972 51215343 -50165178 - THE1C LTR MaLR 0 375 1 1655 128 4 4 chr15 51215491 51215734 -50164787 - AluSx SINE Alu -21 291 49 837 233 107 5 chr15 51215845 51216060 -50164461 - MIR SINE MIR 0 262 26 24 0 0 0 chr15 51216993 51217017 -50163504 + AT_rich Low_complexity Low_complexity 1 24 0 310 284 79 24 chr15 51218620 51218747 -50161774 + L1ME3A LINE L1 5751 5884 -286 412 238 238 18 chr15 51219055 51219223 -50161298 - L2 LINE L2 -8 3305 3101 1266 111 21 0 chr15 51220363 51220552 -50159969 - L1MA1 LINE L1 -41 6261 6069 327 338 0 0 chr15 51221176 51221256 -50159265 + MIR3 SINE MIR 114 193 -15 325 257 14 0 chr15 51221559 51221633 -50158888 + MER7A DNA MER2_type 7 79 -267 * 511 167 62 0 chr15 51221625 51221721 -50158800 + Tigger3(Golem) DNA MER2_type 126 227 -2802 3191 150 135 9 chr15 51221751 51222419 -50158102 + Tigger3(Golem) DNA MER2_type 2278 3029 0 229 209 47 23 chr15 51222611 51222697 -50157824 + L1MB1 LINE L1 5981 6068 -100 257 301 282 0 chr15 51222700 51222863 -50157658 + MIR SINE MIR 54 262 0 2990 212 138 18 chr15 51224053 51224965 -50155556 - Tigger6a DNA MER2_type -13 1070 49 954 197 0 4 chr15 51225850 51226058 -50154463 + AluJb SINE Alu 1 298 -14 231 277 0 0 chr15 51226747 51226812 -50153709 + L1MC/D LINE L1 5824 5888 -1920 206 307 173 5 chr15 51226906 51227025 -50153496 - MIR SINE MIR -62 146 20 180 384 101 0 chr15 51227121 51227220 -50153301 + L2 LINE L2 3127 3235 -37 433 289 98 38 chr15 51228413 51228679 -50151842 + L1ME4a LINE L1 5672 5953 -168 679 305 174 28 chr15 51229333 51230047 -50150474 - L2 LINE L2 -1 3312 2478 408 326 44 37 chr15 51230368 51230641 -50149880 - LTR33 LTR ERVL -245 276 2 279 271 271 0 chr15 51230648 51230781 -50149740 - L2 LINE L2 -845 2469 2301 181 228 105 0 chr15 51231979 51232036 -50148485 + L3 LINE CR1 419 481 -1096 4025 135 14 25 chr15 51233994 51234705 -50145816 + L1PA15 LINE L1 5458 6160 -5 21 0 0 0 chr15 51236076 51236097 -50144424 + AT_rich Low_complexity Low_complexity 1 21 0 373 244 79 8 chr15 51236102 51236229 -50144292 + MER104 DNA Tc2 25 160 -20 1701 176 3 7 chr15 51236317 51236606 -50143915 + AluJb SINE Alu 1 288 -24 4016 250 63 48 chr15 51236619 51238138 -50142383 - L1ME1 LINE L1 -17 6149 4579 2268 96 3 0 chr15 51238138 51238431 -50142090 + AluSp SINE Alu 1 294 -19 4016 250 63 48 chr15 51238431 51239562 -50140959 - L1ME1 LINE L1 -1587 4579 3466 768 225 11 47 chr15 51239675 51239866 -50140655 - MER20 DNA MER1_type -34 185 2 511 326 96 9 chr15 51239869 51240087 -50140434 + MIR SINE MIR 24 260 -2 928 342 54 32 chr15 51241800 51242452 -50138069 + L1M2a LINE L1 1548 2213 -4955 613 254 0 0 chr15 51242454 51242576 -50137945 - FLAM_A SINE Alu -19 123 2 2890 262 63 22 chr15 51242598 51244001 -50136520 + L1MA8 LINE L1 2314 3780 -3785 1164 103 0 7 chr15 51244001 51244271 -50136250 + THE1B LTR MaLR 1 364 0 1183 240 10 6 chr15 51244273 51244586 -50135935 + L1MA8 LINE L1 3776 4089 -3476 4553 192 36 21 chr15 51244593 51245994 -50134527 + L1MA8 LINE L1 6225 7655 -55 3036 170 21 40 chr15 51245994 51246618 -50133903 + LTR9 LTR ERV1 1 612 0 4553 192 36 21 chr15 51246618 51246675 -50133846 + L1MA8 LINE L1 7655 7710 0 3470 253 62 68 chr15 51246950 51247265 -50133256 + L1PA12 LINE L1 42 357 -7224 2349 88 3 0 chr15 51247265 51247570 -50132951 - AluSp SINE Alu -7 306 1 3470 253 62 68 chr15 51247570 51248422 -50132099 + L1PA12 LINE L1 357 1202 -6379 22 0 0 0 chr15 51248643 51248665 -50131856 + AT_rich Low_complexity Low_complexity 1 22 0 19037 180 32 22 chr15 51248714 51249013 -50131508 + L1M1 LINE L1 15 309 -7412 1714 163 7 27 chr15 51249013 51249307 -50131214 + AluJb SINE Alu 1 288 -24 19037 180 32 22 chr15 51249307 51253817 -50126704 + L1M1 LINE L1 309 4771 -2950 2104 151 122 8 chr15 51253817 51254201 -50126320 - MSTA LTR MaLR 0 428 1 8607 178 29 10 chr15 51254201 51255821 -50124700 - MSTA-int LTR MaLR 0 1651 1 1944 144 163 5 chr15 51255821 51256189 -50124332 - MSTA LTR MaLR 0 428 3 19037 180 32 22 chr15 51256189 51256515 -50124006 + L1M1 LINE L1 4771 5092 -2629 1718 185 0 17 chr15 51256515 51256817 -50123704 + AluJb SINE Alu 1 297 -15 19037 180 32 22 chr15 51256817 51258791 -50121730 + L1M1 LINE L1 5092 7195 -526 198 0 0 0 chr15 51258988 51259010 -50121511 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 239 289 134 43 chr15 51259271 51259458 -50121063 + MLT1J LTR MaLR 261 464 -47 1452 180 30 23 chr15 51259743 51260285 -50120236 + L1PB4 LINE L1 4983 5535 -743 2111 177 3 5 chr15 51260285 51260656 -50119865 + L1PB4 LINE L1 5769 6156 0 241 217 24 12 chr15 51260658 51260741 -50119780 + GA-rich Low_complexity Low_complexity 2 85 0 906 341 64 40 chr15 51260760 51261600 -50118921 + L2 LINE L2 2186 3047 -225 1919 128 30 17 chr15 51261670 51261966 -50118555 - AluSx SINE Alu -12 300 1 232 216 27 0 chr15 51262146 51262220 -50118301 + (TA)n Simple_repeat Simple_repeat 2 77 0 357 225 0 0 chr15 51262631 51262720 -50117801 + A-rich Low_complexity Low_complexity 1 89 0 384 312 70 25 chr15 51263578 51263777 -50116744 + MIR SINE MIR 1 208 -54 234 212 15 45 chr15 51266622 51266688 -50113833 + MIR SINE MIR 79 142 -120 357 24 0 0 chr15 51267603 51267645 -50112876 + (CA)n Simple_repeat Simple_repeat 2 43 0 456 258 8 31 chr15 51268060 51268188 -50112333 - L2 LINE L2 0 3313 3189 185 339 157 16 chr15 51268252 51268373 -50112148 + MER5A DNA MER1_type 2 139 -50 346 309 69 63 chr15 51268480 51268797 -50111724 + L1ME4a LINE L1 5645 5963 -158 30 59 0 0 chr15 51268869 51268920 -50111601 + AT_rich Low_complexity Low_complexity 1 51 0 849 307 110 7 chr15 51269465 51269774 -50110747 - LTR33 LTR ERVL -178 343 3 1808 137 4 36 chr15 51270695 51271080 -50109441 - MER1B DNA MER1_type 0 333 1 491 347 57 20 chr15 51271113 51271361 -50109160 - MIR SINE MIR 0 262 6 259 307 0 13 chr15 51272837 51272912 -50107609 - MIR SINE MIR -181 81 8 26 30 0 0 chr15 51272929 51272962 -50107559 + AT_rich Low_complexity Low_complexity 1 33 0 975 197 5 0 chr15 51273696 51273889 -50106632 + L1PB1 LINE L1 1 194 -6669 14054 190 29 18 chr15 51273889 51274798 -50105723 + L1PB1 LINE L1 995 1892 -4975 1798 133 4 0 chr15 51274798 51275054 -50105467 + AluSc SINE Alu 39 295 -14 14054 190 29 18 chr15 51275054 51279750 -50100771 + L1PB1 LINE L1 1892 6866 -1 645 108 18 9 chr15 51279766 51279877 -50100644 + L1MB3 LINE L1 6065 6176 -7 195 299 30 15 chr15 51280022 51280089 -50100432 - L2 LINE L2 -6 3307 3240 465 328 70 84 chr15 51280903 51281448 -50099073 - L2 LINE L2 -489 2825 2289 1167 237 40 18 chr15 51281845 51282174 -50098347 - L1MA9 LINE L1 -38 6274 5939 298 314 78 6 chr15 51282324 51282681 -50097840 + L1M4 LINE L1 2239 2621 -3525 * 783 128 0 70 chr15 51282679 51282706 -50097815 + L1 LINE L1 4895 4922 -1224 2392 55 3 3 chr15 51282706 51282997 -50097524 + AluY SINE Alu 1 291 -20 783 128 0 70 chr15 51282997 51283125 -50097396 + L1 LINE L1 4922 5039 -1107 254 344 16 0 chr15 51283184 51283309 -50097212 + L1M4 LINE L1 2676 2802 -3344 607 320 21 51 chr15 51283313 51283644 -50096877 - MLT1I LTR MaLR -19 390 70 526 289 66 44 chr15 51283935 51284664 -50095857 + L1M4 LINE L1 4617 5361 -785 2608 255 14 49 chr15 51284680 51285666 -50094855 + L1MC4a LINE L1 6853 7804 -4 656 209 23 91 chr15 51285652 51285915 -50094606 + L1MEc LINE L1 1832 2076 -4320 * 1452 210 3 0 chr15 51286432 51286723 -50093798 - L1MA9 LINE L1 -403 5888 5597 901 207 23 5 chr15 51286728 51286945 -50093576 - L1MA9 LINE L1 -826 5320 5100 1460 180 77 25 chr15 51286947 51287254 -50093267 + L1MA7 LINE L1 5905 6235 -56 315 0 0 0 chr15 51287254 51287289 -50093232 + (TG)n Simple_repeat Simple_repeat 2 36 0 1460 180 77 25 chr15 51287289 51287343 -50093178 + L1MA7 LINE L1 6235 6285 -6 72 32 0 0 chr15 51287779 51287872 -50092649 + AT_rich Low_complexity Low_complexity 1 93 0 1769 149 152 11 chr15 51288006 51288381 -50092140 - MSTA LTR MaLR 0 428 1 543 274 66 47 chr15 51288433 51288860 -50091661 + L1MEc LINE L1 1262 1696 -4700 2187 113 0 31 chr15 51289221 51289540 -50090981 + AluSg SINE Alu 1 309 -1 261 243 117 18 chr15 51289738 51289849 -50090672 + L1ME1 LINE L1 5980 6101 -65 1980 255 114 13 chr15 51289913 51290696 -50089825 + L1MC4 LINE L1 6935 7796 -246 304 220 33 22 chr15 51290917 51291008 -50089513 + L1MC4a LINE L1 5812 5903 -1905 638 254 48 59 chr15 51291152 51291424 -50089097 + L1MC4a LINE L1 6591 6859 -949 231 36 0 0 chr15 51291425 51291453 -50089068 + (A)n Simple_repeat Simple_repeat 1 28 0 371 319 38 13 chr15 51291736 51291893 -50088628 + MIR SINE MIR 64 224 -38 214 255 88 69 chr15 51291978 51292080 -50088441 - L2 LINE L2 -1 3271 3168 2390 90 3 0 chr15 51292087 51292397 -50088124 - AluY SINE Alu 0 311 1 324 0 0 0 chr15 51292523 51292559 -50087962 + (A)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr15 51293745 51293767 -50086754 + AT_rich Low_complexity Low_complexity 1 22 0 630 243 40 17 chr15 51293797 51293970 -50086551 - MER5B DNA MER1_type 0 178 2 1830 135 71 0 chr15 51295650 51295931 -50084590 + AluSx SINE Alu 1 301 -11 428 269 47 40 chr15 51295989 51296138 -50084383 + L1ME1 LINE L1 6012 6161 -5 1748 140 11 0 chr15 51297800 51298064 -50082457 + AluSx SINE Alu 14 280 -32 227 319 28 0 chr15 51298071 51298143 -50082378 + GA-rich Low_complexity Low_complexity 3 76 0 415 143 0 0 chr15 51298353 51298423 -50082098 + L1MA2 LINE L1 6235 6304 0 2033 124 7 0 chr15 51299000 51299282 -50081239 + AluSg SINE Alu 1 284 -26 205 300 0 0 chr15 51299476 51299526 -50080995 + L2 LINE L2 3221 3270 -43 26 50 0 0 chr15 51299607 51299647 -50080874 + AT_rich Low_complexity Low_complexity 1 40 0 2271 145 56 0 chr15 51300385 51300758 -50079763 + MER61B LTR ERV1 1 394 -31 574 320 99 56 chr15 51301356 51301840 -50078681 + L2 LINE L2 2804 3308 -5 203 229 161 25 chr15 51301843 51301961 -50078560 - MIR SINE MIR -63 199 66 1396 235 66 41 chr15 51302203 51302645 -50077876 + L1MCc LINE L1 18 470 -5953 1741 253 92 5 chr15 51302755 51303312 -50077209 + L1MCc LINE L1 963 1566 -4856 215 329 14 14 chr15 51303631 51303704 -50076817 + MIR SINE MIR 67 139 -69 287 333 52 0 chr15 51303970 51304066 -50076455 + MIR3 SINE MIR 92 192 -16 43748 41 3 3 chr15 51304070 51310224 -50070297 + L1PA4 LINE L1 2 6152 -3 2951 184 45 5 chr15 51311011 51311367 -50069154 - MER6A DNA MER2_type -260 605 216 315 0 0 0 chr15 51311367 51311402 -50069119 + (CA)n Simple_repeat Simple_repeat 1 35 0 2951 184 45 5 chr15 51311402 51311627 -50068894 - MER6A DNA MER2_type -649 216 1 190 154 0 39 chr15 51312743 51312795 -50067726 + CT-rich Low_complexity Low_complexity 1 50 0 6132 136 46 18 chr15 51312880 51313971 -50066550 - MER52C LTR ERV1 0 1278 158 837 183 0 17 chr15 51315755 51315930 -50064591 - L1MA3 LINE L1 0 6305 6134 496 316 96 0 chr15 51316161 51316338 -50064183 - LTR16B LTR ERVL -270 194 1 233 314 143 19 chr15 51317341 51317551 -50062970 + Charlie7 DNA MER1_type 138 373 -2239 1849 227 62 72 chr15 51317564 51318211 -50062310 + Charlie7 DNA MER1_type 499 1138 -1474 1995 101 3 65 chr15 51318211 51318518 -50062003 - AluSp SINE Alu -25 288 1 1849 227 62 72 chr15 51318518 51318691 -50061830 + Charlie7 DNA MER1_type 1138 1311 -1301 228 200 0 0 chr15 51319416 51319461 -50061060 - L2 LINE L2 -1 3312 3268 256 277 32 11 chr15 51319508 51319602 -50060919 + L1MC/D LINE L1 5665 5760 -2048 25 0 0 0 chr15 51319707 51319732 -50060789 + AT_rich Low_complexity Low_complexity 1 25 0 1597 254 91 26 chr15 51319732 51320421 -50060100 + Charlie7 DNA MER1_type 1399 2132 -480 471 284 44 16 chr15 51323033 51323216 -50057305 - LTR33 LTR ERVL -8 513 326 281 341 8 8 chr15 51323338 51323461 -50057060 - LTR33 LTR ERVL -373 148 26 26 0 0 0 chr15 51323539 51323565 -50056956 + AT_rich Low_complexity Low_complexity 1 26 0 726 321 54 50 chr15 51323757 51324261 -50056260 - HAL1b LINE L1 -839 509 4 23 33 0 0 chr15 51325561 51325591 -50054930 + AT_rich Low_complexity Low_complexity 1 30 0 580 317 227 26 chr15 51325591 51326326 -50054195 - L1MEc LINE L1 -4128 2268 1386 240 303 22 0 chr15 51326523 51326612 -50053909 - L1MEc LINE L1 -5091 1114 1024 5695 123 21 4 chr15 51326970 51327879 -50052642 - L1MA2 LINE L1 0 7723 6800 2683 101 14 17 chr15 51327879 51328297 -50052224 + MER11A LTR ERVK 850 1266 0 6912 175 22 5 chr15 51328328 51329692 -50050829 - L1MA2 LINE L1 -862 6703 5317 * 12220 159 32 7 chr15 51329684 51332524 -50047997 - L1MA2 LINE L1 -3116 4449 1540 1351 185 21 4 chr15 51332526 51332841 -50047680 + MER52A LTR ERV1 1391 1755 0 769 217 13 7 chr15 51332842 51332994 -50047527 - L1MA2 LINE L1 -7229 336 184 372 80 0 0 chr15 51332996 51333082 -50047439 + L1PA8 LINE L1 6110 6195 0 3095 305 237 27 chr15 51333162 51334258 -50046263 - L2 LINE L2 -6 3307 2442 1762 199 17 6 chr15 51334258 51334619 -50045902 + MLT1A1 LTR MaLR 1 365 0 3095 305 237 27 chr15 51334619 51336174 -50044347 - L2 LINE L2 -871 2442 80 2215 102 0 10 chr15 51336597 51336902 -50043619 - AluSg1 SINE Alu -7 302 1 296 230 54 0 chr15 51337084 51337158 -50043363 - MIR SINE MIR -113 149 72 721 221 123 6 chr15 51337231 51337394 -50043127 + MER5A DNA MER1_type 2 183 -6 238 308 51 51 chr15 51338437 51338554 -50041967 - MIR3 SINE MIR -53 155 39 923 192 206 9 chr15 51338688 51339082 -50041439 + Charlie1b DNA MER1_type 44 523 0 342 340 156 35 chr15 51339145 51339680 -50040841 - L2 LINE L2 -1 3312 2716 842 310 65 49 chr15 51340301 51340827 -50039694 - L2 LINE L2 -587 2727 2194 1231 220 50 73 chr15 51340831 51341313 -50039208 + LTR53 LTR ERVL 37 507 -12 649 323 201 29 chr15 51341409 51341839 -50038682 - L2 LINE L2 -1219 2095 1740 1950 150 29 47 chr15 51341839 51342219 -50038302 - THE1C LTR MaLR -2 373 1 649 323 201 29 chr15 51342219 51342473 -50038048 - L2 LINE L2 -1574 1740 1293 211 342 38 0 chr15 51342662 51342741 -50037780 - MIR SINE MIR -63 145 64 1394 300 89 32 chr15 51343278 51343325 -50037196 + L1M2c LINE L1 785 828 -6738 261 0 0 0 chr15 51343325 51343354 -50037167 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1394 300 89 32 chr15 51343354 51343903 -50036618 + L1M2c LINE L1 828 1415 -6151 4248 229 65 49 chr15 51343999 51344893 -50035628 + L1M2c LINE L1 2097 2975 -4590 2001 189 65 5 chr15 51344893 51345295 -50035226 - MSTB LTR MaLR 0 426 1 4248 229 65 49 chr15 51345295 51347297 -50033224 + L1M2c LINE L1 2975 4768 -2797 324 221 13 0 chr15 51347289 51347366 -50033155 + L1M2c LINE L1 5464 5541 -2024 * 772 232 30 5 chr15 51347414 51347612 -50032909 + L1M2c LINE L1 5536 5738 -1827 493 204 10 10 chr15 51347608 51347771 -50032750 + L1MA6 LINE L1 12 314 -6535 * 11302 195 25 60 chr15 51347762 51350852 -50029669 + L1MA6 LINE L1 3126 6105 -743 1488 182 69 90 chr15 51350857 51351419 -50029102 + MLT2A2 LTR ERVL 1 554 0 4292 170 30 19 chr15 51351419 51352306 -50028215 + L1MA6 LINE L1 6106 7002 0 28 29 0 0 chr15 51352306 51352341 -50028180 + AT_rich Low_complexity Low_complexity 1 35 0 2132 121 0 0 chr15 51352658 51352938 -50027583 + AluSg SINE Alu 1 280 -30 539 333 42 42 chr15 51354116 51354470 -50026051 + L1M4 LINE L1 2182 2535 -3611 40012 72 4 4 chr15 51354528 51360666 -50019855 + L1PA5 LINE L1 11 6149 -5 247 65 43 0 chr15 51360699 51360745 -50019776 + (TA)n Simple_repeat Simple_repeat 1 48 0 267 197 33 0 chr15 51360774 51360835 -50019686 - L1MA9 LINE L1 -21 6291 6229 1129 125 0 24 chr15 51360838 51361006 -50019515 - AluSg/x SINE Alu -14 298 135 1039 233 44 25 chr15 51361060 51361169 -50019352 + AluJo SINE Alu 17 123 -189 239 0 32 0 chr15 51361169 51361200 -50019321 + (TAAAA)n Simple_repeat Simple_repeat 5 36 0 1039 233 44 25 chr15 51361200 51361365 -50019156 + AluJo SINE Alu 123 296 -16 2489 241 38 43 chr15 51361384 51361995 -50018526 + L1PA15 LINE L1 3 610 -6177 3632 207 17 7 chr15 51362013 51363016 -50017505 + L1PA15 LINE L1 1551 2574 -4223 7948 214 10 4 chr15 51363067 51364791 -50015730 + L1PA15 LINE L1 4106 5839 -958 1955 245 24 39 chr15 51364794 51365329 -50015192 + L1MA1 LINE L1 8 534 -7031 1021 186 0 0 chr15 51365329 51365496 -50015025 - AluJb SINE Alu -13 299 133 6350 191 108 5 chr15 51365496 51366891 -50013630 + L1MA1 LINE L1 521 2421 -5144 6194 158 19 6 chr15 51366888 51368733 -50011788 + L1PB1 LINE L1 4275 6145 -6 * 14406 163 41 9 chr15 51368756 51373876 -50006645 + L1MA1 LINE L1 2418 7717 -4 24 0 0 0 chr15 51373885 51373909 -50006612 + AT_rich Low_complexity Low_complexity 1 24 0 5578 134 28 3 chr15 51373909 51374841 -50005680 + L1PA15 LINE L1 5831 6812 -4 957 197 14 34 chr15 51375075 51375283 -50005238 + MER3 DNA MER1_type 6 209 0 258 32 0 0 chr15 51375426 51375457 -50005064 + (CA)n Simple_repeat Simple_repeat 2 32 0 879 238 146 100 chr15 51375468 51375500 -50005021 + L1MC4 LINE L1 7093 7122 -920 623 250 102 5 chr15 51375500 51375696 -50004825 + MER58C DNA MER1_type 1 215 0 879 238 146 100 chr15 51375696 51376565 -50003956 + L1MC4 LINE L1 7122 8036 -6 466 329 0 8 chr15 51377135 51377283 -50003238 + MIR3 SINE MIR 13 160 -48 3847 149 24 28 chr15 51377806 51378526 -50001995 + LTR62 LTR ERVK 1 717 -2 672 361 26 13 chr15 51380048 51380621 -49999900 + ERVL LTR ERVL 4399 4999 -765 817 271 60 11 chr15 51381209 51381490 -49999031 + LTR16A LTR ERVL 156 450 0 4905 151 34 16 chr15 51382597 51383512 -49997009 - L1MA4A LINE L1 -5 6298 5368 23 33 0 0 chr15 51384563 51384593 -49995928 + AT_rich Low_complexity Low_complexity 1 30 0 407 242 78 31 chr15 51384842 51384970 -49995551 - MIR SINE MIR -50 212 79 254 250 60 24 chr15 51385042 51385126 -49995395 + L2 LINE L2 3227 3313 0 1693 234 46 14 chr15 51385346 51386026 -49994495 + L1MA9 LINE L1 3344 4043 -3522 9949 70 48 11 chr15 51386063 51387398 -49993123 - SVA Other Other 0 1386 2 198 70 0 88 chr15 51387399 51387456 -49993065 + (GGGAGA)n Simple_repeat Simple_repeat 2 53 0 412 225 144 0 chr15 51387463 51387574 -49992947 + L1MA9 LINE L1 4035 4161 -3404 1112 204 40 9 chr15 51387597 51387925 -49992596 + L1MA9 LINE L1 4558 4895 -2670 5924 138 12 0 chr15 51387938 51388866 -49991655 - L1P LINE L1 -1231 4915 3977 10253 127 24 8 chr15 51388872 51390560 -49989961 + L1P LINE L1 2239 3957 -2189 2579 68 0 0 chr15 51390560 51390870 -49989651 + AluY SINE Alu 1 310 -1 10253 127 24 8 chr15 51390870 51390908 -49989613 + L1P LINE L1 3957 3993 -2153 1529 205 57 3 chr15 51390906 51391272 -49989249 + L1MA9 LINE L1 4998 5383 -2182 * 4429 188 24 35 chr15 51391298 51392393 -49988128 + L1MA9 LINE L1 6610 7693 -38 313 117 242 8 chr15 51392414 51392542 -49987979 + Charlie1 DNA MER1_type 2533 2690 -71 425 272 169 10 chr15 51393476 51393671 -49986850 - MIR SINE MIR -9 253 28 484 205 172 33 chr15 51394648 51394799 -49985722 - FAM SINE Alu -3 172 1 433 239 218 0 chr15 51395961 51396158 -49984363 + L1ME LINE L1 5573 5812 -309 2307 172 62 22 chr15 51396448 51396718 -49983803 + L1MB8 LINE L1 5616 5874 -304 2356 126 16 8 chr15 51396718 51397090 -49983431 + THE1C LTR MaLR 1 375 0 2307 172 62 22 chr15 51397090 51397355 -49983166 + L1MB8 LINE L1 5874 6172 -6 317 65 0 0 chr15 51398476 51398522 -49981999 + L1PA8 LINE L1 6127 6172 0 1805 153 0 49 chr15 51399017 51399344 -49981177 - AluJb SINE Alu -1 311 1 291 313 203 9 chr15 51399526 51399753 -49980768 - L3 LINE CR1 -155 1422 1152 735 333 91 38 chr15 51400158 51400761 -49979760 + HAL1 LINE L1 36 670 -1837 1177 256 151 28 chr15 51400766 51401269 -49979252 + L1ME1 LINE L1 5536 6100 -66 300 286 38 8 chr15 51401187 51401320 -49979201 + L1MA10 LINE L1 6175 6311 -23 * 530 239 134 0 chr15 51402125 51402267 -49978254 - MER5B DNA MER1_type -16 162 2 394 333 98 51 chr15 51402533 51403054 -49977467 + L2 LINE L2 2480 3018 -254 660 266 87 5 chr15 51403237 51403421 -49977100 + MIR SINE MIR 31 229 -33 216 135 0 0 chr15 51403424 51403461 -49977060 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1261 251 98 21 chr15 51403511 51403889 -49976632 + MLT1E2 LTR MaLR 38 444 -182 2111 132 3 0 chr15 51404112 51404408 -49976113 + AluSx SINE Alu 2 298 -14 320 306 24 24 chr15 51404433 51404557 -49975964 - MIR SINE MIR 0 262 139 298 226 0 0 chr15 51405073 51405135 -49975386 - L1MA5 LINE L1 -4 6296 6235 2620 179 32 54 chr15 51405147 51405707 -49974814 + Tigger1 DNA MER2_type 7 554 -1864 841 88 0 0 chr15 51405711 51405824 -49974697 - L1MA1 LINE L1 -6 6296 6184 274 95 0 0 chr15 51405824 51405866 -49974655 + L1MA3 LINE L1 6132 6173 -132 717 124 8 47 chr15 51405880 51406009 -49974512 + MSTA LTR MaLR 305 428 0 254 114 0 0 chr15 51406009 51406044 -49974477 - MLT2B2 LTR ERVL -480 35 1 1471 169 14 2 chr15 51406262 51406627 -49973894 - MSTB LTR MaLR -2 424 1 23 0 0 0 chr15 51406792 51406815 -49973706 + AT_rich Low_complexity Low_complexity 1 23 0 206 167 93 37 chr15 51407541 51407595 -49972926 + MIR3 SINE MIR 142 198 -10 252 177 16 32 chr15 51407596 51407658 -49972863 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 526 359 43 17 chr15 51407909 51408143 -49972378 + MIR SINE MIR 16 255 -7 313 377 51 75 chr15 51408293 51408747 -49971774 + L2 LINE L2 2808 3250 -22 690 258 81 54 chr15 51408805 51409098 -49971423 - MLT1J LTR MaLR -23 488 146 1386 159 95 55 chr15 51409098 51409424 -49971097 - MER44D DNA MER2_type 0 609 1 690 258 81 54 chr15 51409424 51409482 -49971039 - MLT1J LTR MaLR -365 146 91 190 175 25 25 chr15 51409637 51409677 -49970844 + L3 LINE CR1 1519 1558 -19 22 35 0 0 chr15 51409685 51409714 -49970807 + AT_rich Low_complexity Low_complexity 1 29 0 265 313 21 95 chr15 51411638 51411881 -49968640 + L1MEd LINE L1 301 525 -5594 371 232 116 18 chr15 51412008 51412120 -49968401 - MER67D LTR ERV1 -8 506 384 1028 183 14 124 chr15 51412126 51412416 -49968105 - MER67D LTR ERV1 -256 258 1 303 296 98 0 chr15 51412573 51412705 -49967816 + L1MEd LINE L1 2661 2805 -3324 25 31 0 0 chr15 51412705 51412737 -49967784 + AT_rich Low_complexity Low_complexity 1 32 0 483 276 83 26 chr15 51413240 51413299 -49967222 + MLT1J2 LTR MaLR 37 91 -359 3955 103 5 0 chr15 51413299 51413850 -49966671 - MER41A LTR ERV1 0 554 1 483 276 83 26 chr15 51413850 51413982 -49966539 + MLT1J2 LTR MaLR 91 239 -211 771 139 57 13 chr15 51414012 51414170 -49966351 + L1MA7 LINE L1 6127 6291 0 324 102 0 0 chr15 51415193 51415242 -49965279 + (T)n Simple_repeat Simple_repeat 1 49 0 460 332 75 22 chr15 51415276 51415502 -49965019 + MIR SINE MIR 9 246 -16 2384 94 0 0 chr15 51416270 51416567 -49963954 + AluSg SINE Alu 1 297 -13 2699 111 12 16 chr15 51417114 51417545 -49962976 + L1MA3 LINE L1 5877 6305 0 37 0 0 0 chr15 51417738 51417775 -49962746 + AT_rich Low_complexity Low_complexity 1 37 0 317 165 25 25 chr15 51417922 51418001 -49962520 + L1MC2 LINE L1 6255 6333 -11 1735 202 8 16 chr15 51418607 51418836 -49961685 - MLT1A1 LTR MaLR -2 363 134 1572 153 191 25 chr15 51418836 51419203 -49961318 + MSTA LTR MaLR 1 428 0 8968 143 24 41 chr15 51419205 51420808 -49959713 + MSTA-int LTR MaLR 3 1578 -2 1473 182 168 32 chr15 51420810 51421184 -49959337 + MSTA LTR MaLR 1 425 -3 1735 202 8 16 chr15 51421184 51421314 -49959207 - MLT1A1 LTR MaLR -233 132 1 458 218 0 27 chr15 51421943 51422053 -49958468 + MLT1I LTR MaLR 303 409 0 22 56 0 0 chr15 51422680 51422716 -49957805 + AT_rich Low_complexity Low_complexity 1 36 0 283 250 120 0 chr15 51422823 51422931 -49957590 - MIR SINE MIR -50 212 92 302 253 13 0 chr15 51424258 51424337 -49956184 + MIR3 SINE MIR 109 188 -20 2166 133 0 0 chr15 51425024 51425324 -49955197 - AluSx SINE Alu -12 300 1 223 348 82 70 chr15 51425391 51425831 -49954690 + L2 LINE L2 2376 2820 -494 1886 181 39 13 chr15 51425884 51425970 -49954551 + MLT2D LTR ERVL 3 85 -430 663 169 0 23 chr15 51425970 51426100 -49954421 + L1PB4 LINE L1 6028 6154 -2 1886 181 39 13 chr15 51426100 51426417 -49954104 + MLT2D LTR ERVL 85 515 0 371 275 83 0 chr15 51427014 51427123 -49953398 - MIR SINE MIR -66 142 25 564 258 50 6 chr15 51427617 51427776 -49952745 - MIR SINE MIR -13 249 84 2013 203 18 24 chr15 51428449 51428907 -49951614 - L1MA6 LINE L1 -5 7316 6862 4864 161 48 2 chr15 51428911 51429842 -49950679 - L1MA6 LINE L1 -1197 5970 4997 3613 168 42 57 chr15 51429842 51430629 -49949892 - LTR1 LTR ERV1 0 785 11 6554 233 57 14 chr15 51430643 51432700 -49947821 - L1MA6 LINE L1 -2168 4999 2851 304 347 28 7 chr15 51432857 51433001 -49947520 - L1MA6 LINE L1 -7018 150 4 1239 174 16 8 chr15 51433564 51433822 -49946699 + L1MD3 LINE L1 7736 7995 0 322 242 11 11 chr15 51433830 51433925 -49946596 + L1MC4 LINE L1 6494 6588 -1454 387 344 25 19 chr15 51434570 51434730 -49945791 + MIR3 SINE MIR 40 200 -8 516 296 68 0 chr15 51434793 51434969 -49945552 - MIR SINE MIR -34 228 41 363 266 18 18 chr15 51434971 51435084 -49945437 - L2 LINE L2 -749 2565 2453 264 238 16 0 chr15 51435699 51435762 -49944759 + MER117 DNA MER1_type 1 64 -133 262 297 33 44 chr15 51435860 51435951 -49944570 + L3 LINE CR1 1371 1460 -117 261 242 50 17 chr15 51436002 51436122 -49944399 + L1ME4a LINE L1 5994 6117 -4 768 217 24 6 chr15 51436580 51436746 -49943775 + MIR SINE MIR 69 237 -25 210 283 38 0 chr15 51436714 51436767 -49943754 + L2 LINE L2 3210 3264 -8 * 2226 105 0 3 chr15 51437141 51437435 -49943086 - AluSg SINE Alu -17 293 1 29 0 0 0 chr15 51437680 51437709 -49942812 + AT_rich Low_complexity Low_complexity 1 29 0 2163 89 3 80 chr15 51439381 51439708 -49940813 - AluSp SINE Alu -11 302 1 364 293 167 32 chr15 51439806 51440052 -49940469 + L2 LINE L2 2633 2911 -403 831 231 18 83 chr15 51440071 51440408 -49940113 + MLT2C1 LTR ERVL 17 331 -66 1826 197 47 5 chr15 51440521 51440907 -49939614 + MSTB LTR MaLR 1 402 -24 778 277 136 19 chr15 51440928 51441238 -49939283 + L2 LINE L2 2967 3312 -1 1785 201 0 0 chr15 51441964 51442273 -49938248 + AluJb SINE Alu 1 309 -3 380 300 88 6 chr15 51442669 51442829 -49937692 + L1MC/D LINE L1 5069 5241 -905 400 330 83 16 chr15 51442893 51443205 -49937316 + L1MC/D LINE L1 5313 5645 -2163 376 293 133 48 chr15 51444629 51444817 -49935704 + MIR SINE MIR 26 229 -33 889 149 60 30 chr15 51445703 51445871 -49934650 + FRAM SINE Alu 1 166 -10 382 244 118 0 chr15 51446640 51446759 -49933762 - MIR SINE MIR -6 256 124 630 270 42 5 chr15 51446832 51447021 -49933500 + MIR SINE MIR 12 207 -55 252 284 48 25 chr15 51447254 51447346 -49933175 - MIR SINE MIR -71 137 45 1976 159 108 16 chr15 51447391 51447648 -49932873 - MLT1C LTR MaLR 0 467 235 414 0 0 0 chr15 51447648 51447694 -49932827 + (TG)n Simple_repeat Simple_repeat 2 47 0 1976 159 108 16 chr15 51447694 51447864 -49932657 - MLT1C LTR MaLR -232 235 1 1847 215 20 16 chr15 51448495 51448941 -49931580 + L1MA10 LINE L1 5874 6321 -13 617 291 48 65 chr15 51448961 51449191 -49931330 - MIR SINE MIR -19 243 18 367 364 120 7 chr15 51449612 51449903 -49930618 - L1 LINE L1 -1127 5019 4696 3149 184 45 106 chr15 51449929 51450896 -49929625 - MER21A LTR ERV1 -6 925 17 2131 135 3 3 chr15 51451041 51451352 -49929169 + AluSq SINE Alu 3 313 0 440 285 37 48 chr15 51451498 51451768 -49928753 - L1 LINE L1 -2800 3346 3080 21 71 0 0 chr15 51451799 51451841 -49928680 + AT_rich Low_complexity Low_complexity 1 42 0 2219 130 0 0 chr15 51452012 51452320 -49928201 - AluSg SINE Alu -2 308 1 348 24 0 0 chr15 51453315 51453356 -49927165 + (CA)n Simple_repeat Simple_repeat 1 41 0 477 339 76 5 chr15 51454144 51454368 -49926153 + MIR SINE MIR 13 252 -10 2458 76 0 3 chr15 51455018 51455322 -49925199 - AluY SINE Alu -8 303 1 28608 113 11 68 chr15 51455983 51461133 -49919388 + L1PA7 LINE L1 1 4687 -1467 2399 90 0 6 chr15 51461133 51461444 -49919077 + AluSg SINE Alu 1 309 -1 28608 113 11 68 chr15 51461444 51462832 -49917689 + L1PA7 LINE L1 4687 6153 -1 188 57 0 57 chr15 51463135 51463170 -49917351 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 311 220 192 10 chr15 51463339 51463539 -49916982 - MER5C DNA MER1_type -2 322 14 433 238 112 24 chr15 51463558 51463860 -49916661 + L1MEd LINE L1 1016 1381 -4865 1535 155 48 16 chr15 51463879 51464189 -49916332 + L1MC/D LINE L1 5290 5609 -724 825 281 98 39 chr15 51464202 51464643 -49915878 + L1M3b LINE L1 1219 1685 -5811 6365 225 57 16 chr15 51465060 51468318 -49912203 + L1M3b LINE L1 2078 5409 -2156 1094 293 48 9 chr15 51468331 51468856 -49911665 + L1PBa LINE L1 7 551 -6312 225 287 85 57 chr15 51468887 51469169 -49911352 - HAL1 LINE L1 -963 1544 1255 226 269 192 13 chr15 51470753 51470831 -49909690 - MIR SINE MIR -75 133 42 651 238 122 0 chr15 51471072 51471219 -49909302 - FAM SINE Alu -8 41 1 1118 162 0 0 chr15 51472290 51472463 -49908058 + AluJo SINE Alu 127 299 -13 8482 179 43 30 chr15 51472582 51475551 -49904970 + L1MA7 LINE L1 3287 6289 -2 2489 74 0 0 chr15 51476032 51476342 -49904179 + AluY SINE Alu 1 310 -1 1343 229 56 20 chr15 51476517 51476949 -49903572 + L1MC4a LINE L1 6604 6999 -809 21872 59 2 2 chr15 51476961 51479879 -49900642 + L1PA3 LINE L1 9 2926 -3220 309 238 0 0 chr15 51480042 51480143 -49900378 + A-rich Low_complexity Low_complexity 1 101 0 210 136 34 17 chr15 51480245 51480304 -49900217 + GA-rich Low_complexity Low_complexity 1 60 0 19685 33 5 0 chr15 51480307 51483470 -49897051 + L1PA3 LINE L1 2986 6152 -3 1989 248 60 41 chr15 51483481 51484291 -49896230 + L1MC4a LINE L1 6983 7808 0 275 270 40 0 chr15 51484394 51484468 -49896053 - L2 LINE L2 -12 3260 3184 214 286 0 0 chr15 51484583 51484632 -49895889 - L2 LINE L2 -352 2961 2913 2155 101 34 0 chr15 51485793 51486090 -49894431 - AluSx SINE Alu -5 307 1 4407 217 22 0 chr15 51486166 51487046 -49893475 + MER54A LTR ERVL 3 901 0 28 0 0 0 chr15 51487143 51487171 -49893350 + AT_rich Low_complexity Low_complexity 1 28 0 1862 144 7 17 chr15 51487625 51487917 -49892604 + AluJb SINE Alu 1 289 -23 294 247 97 11 chr15 51487965 51488058 -49892463 + Charlie8 DNA MER1_type 127 227 -2190 204 339 118 16 chr15 51488759 51488886 -49891635 - MIR3 SINE MIR -31 177 38 211 263 232 0 chr15 51489495 51489594 -49890927 + MIR SINE MIR 63 184 -78 303 202 8 143 chr15 51489682 51489801 -49890720 + MIR3 SINE MIR 94 196 -12 252 59 0 0 chr15 51491080 51491114 -49889407 + (TG)n Simple_repeat Simple_repeat 1 34 0 1978 122 29 35 chr15 51491116 51491493 -49889028 - L1MA3 LINE L1 -44 6261 5887 * 2559 158 39 54 chr15 51491477 51491792 -49888729 - L1 LINE L1 -1509 6056 5753 2898 26 0 6 chr15 51491792 51492134 -49888387 + L1PA5 LINE L1 5809 6148 -6 2559 158 39 54 chr15 51492134 51492431 -49888090 - L1 LINE L1 -1812 5753 5453 2279 178 97 21 chr15 51492432 51492905 -49887616 + LTR22 LTR ERVK 1 509 0 4447 134 17 0 chr15 51492905 51493642 -49886879 + HERVK22 LTR ERVK 1 786 -6051 * 19689 101 9 10 chr15 51493635 51496793 -49883728 + HERVK22 LTR ERVK 2314 6837 0 1207 226 96 12 chr15 51496793 51497199 -49883322 + LTR22 LTR ERVK 1 509 0 19228 169 85 14 chr15 51497200 51502263 -49878258 - L1 LINE L1 -2109 5456 12 235 352 72 51 chr15 51502542 51502874 -49877647 + L2 LINE L2 2914 3252 -20 246 353 52 60 chr15 51503060 51503312 -49877209 + L2 LINE L2 1042 1291 -2023 235 323 91 55 chr15 51503641 51503861 -49876660 - MLT1L LTR MaLR -11 604 377 370 218 139 0 chr15 51503936 51504037 -49876484 - MLT1L LTR MaLR -337 278 164 332 310 90 7 chr15 51504855 51505010 -49875511 + MIR SINE MIR 85 252 -10 562 268 138 18 chr15 51505065 51505289 -49875232 - MIR SINE MIR 0 262 12 287 281 153 36 chr15 51505511 51505707 -49874814 + MIR SINE MIR 44 262 0 303 28 0 0 chr15 51506003 51506039 -49874482 + (CA)n Simple_repeat Simple_repeat 1 36 0 5047 81 17 1 chr15 51506112 51506800 -49873721 + L1PA8 LINE L1 5474 6172 0 1245 108 18 0 chr15 51507592 51507758 -49872763 + AluSg/x SINE Alu 131 299 -13 2280 177 31 15 chr15 51508504 51509045 -49871476 - L1PB4 LINE L1 -1278 4868 4319 1930 183 39 22 chr15 51509045 51509619 -49870902 + L1PB4 LINE L1 4881 5463 -693 4165 118 67 1 chr15 51509619 51510280 -49870241 - L1PA11 LINE L1 -4 6170 5467 1930 183 39 22 chr15 51510280 51510322 -49870199 + L1PB4 LINE L1 5463 5503 -653 1982 171 55 17 chr15 51510322 51510726 -49869795 + L1PB4 LINE L1 5731 6149 -7 2437 62 0 10 chr15 51510915 51511220 -49869301 + AluY SINE Alu 1 302 -9 28 0 0 0 chr15 51512012 51512040 -49868481 + AT_rich Low_complexity Low_complexity 1 28 0 1540 192 10 24 chr15 51512235 51512527 -49867994 + AluJo SINE Alu 1 288 -24 2122 116 7 3 chr15 51513267 51513569 -49866952 + AluSp SINE Alu 7 309 -4 13986 161 29 7 chr15 51514114 51520558 -49859963 + L1MA1 LINE L1 1136 7721 0 29 47 0 0 chr15 51520558 51520601 -49859920 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr15 51520939 51520961 -49859560 + AT_rich Low_complexity Low_complexity 1 22 0 315 308 63 20 chr15 51521949 51522202 -49858319 + L1ME4a LINE L1 5602 5865 -256 272 204 133 9 chr15 51522286 51522399 -49858122 + L1ME4a LINE L1 5969 6095 -26 2236 92 7 0 chr15 51523381 51523663 -49856858 + AluSx SINE Alu 11 294 -18 225 281 44 9 chr15 51524050 51524164 -49856357 - MER103 DNA DNA -3 163 46 2585 181 64 10 chr15 51524334 51525014 -49855507 - L1MA8 LINE L1 -1 7015 6275 9773 188 103 16 chr15 51525014 51525235 -49855286 - L1MA8 LINE L1 -1756 5106 4906 2321 88 0 3 chr15 51525235 51525529 -49854992 - AluY SINE Alu -18 293 1 9773 188 103 16 chr15 51525529 51525710 -49854811 - L1MA8 LINE L1 -1956 4906 4742 2427 96 6 11 chr15 51525710 51526073 -49854448 - L1PB1 LINE L1 0 6151 5791 9773 188 103 16 chr15 51526073 51527819 -49852702 - L1MA8 LINE L1 -2120 4742 3150 360 0 0 0 chr15 51527819 51527859 -49852662 + (TG)n Simple_repeat Simple_repeat 2 41 0 9773 188 103 16 chr15 51527859 51529595 -49850926 - L1MA8 LINE L1 -3712 3150 764 3311 238 60 21 chr15 51529596 51530443 -49850078 - L1 LINE L1 -3124 3982 3170 1778 175 3 10 chr15 51530443 51530751 -49849770 - AluSx SINE Alu 0 312 7 3311 238 60 21 chr15 51530751 51531655 -49848866 - L1 LINE L1 -3936 3170 2187 306 0 0 0 chr15 51531655 51531689 -49848832 + (T)n Simple_repeat Simple_repeat 1 34 0 2770 22 11 8 chr15 51531691 51532053 -49848468 - L1HS LINE L1 0 6155 5793 30728 35 22 1 chr15 51532314 51537631 -49842890 - L1P1 LINE L1 -687 5468 2 346 276 46 7 chr15 51537631 51537773 -49842748 + L1ME3 LINE L1 5699 5837 -324 * 1455 256 92 39 chr15 51537768 51537798 -49842723 - L1 LINE L1 -4732 2305 2278 1838 84 8 42 chr15 51537798 51538060 -49842461 - AluY SINE Alu -10 301 49 1455 256 92 39 chr15 51538060 51539019 -49841502 - L1 LINE L1 -4759 2278 1371 2231 156 43 14 chr15 51539019 51539435 -49841086 - MSTA LTR MaLR 0 428 1 1455 256 92 39 chr15 51539435 51539632 -49840889 - L1 LINE L1 -5666 1371 9 427 261 173 13 chr15 51539665 51539972 -49840549 - LTR37A LTR ERV1 -33 393 38 3948 229 99 23 chr15 51540223 51541606 -49838915 - L1PBa LINE L1 -3717 3145 1653 1647 149 21 14 chr15 51541606 51541894 -49838627 + L1PB3 LINE L1 5855 6144 -10 2229 60 3 0 chr15 51542384 51542666 -49837855 - L1PA7 LINE L1 -5 6149 5867 380 312 24 8 chr15 51543250 51543375 -49837146 + L2 LINE L2 3187 3313 0 333 344 115 34 chr15 51544079 51544229 -49836292 - L1M4 LINE L1 -3381 2765 2629 1138 249 8 0 chr15 51544229 51544466 -49836055 - MER8 DNA MER2_type 0 239 1 333 344 115 34 chr15 51544466 51544731 -49835790 - L1M4 LINE L1 -3517 2629 2316 2044 176 102 127 chr15 51544783 51545499 -49835022 - L1ME1 LINE L1 -12 6154 5457 998 278 41 17 chr15 51546282 51546627 -49833894 - L3 LINE CR1 -439 1138 786 730 166 199 0 chr15 51547589 51547740 -49832781 - L1PB4 LINE L1 -12 6144 5964 2174 140 84 15 chr15 51547740 51547946 -49832575 + L1PB4 LINE L1 5519 5709 -447 2586 139 64 2 chr15 51547946 51548384 -49832137 + MER4C LTR ERV1 1 465 0 2174 140 84 15 chr15 51548384 51548436 -49832085 + L1PB4 LINE L1 5709 5756 -400 270 0 0 0 chr15 51548436 51548466 -49832055 + (CA)n Simple_repeat Simple_repeat 2 31 0 2174 140 84 15 chr15 51548466 51548612 -49831909 + L1PB4 LINE L1 5756 5952 -204 817 298 84 14 chr15 51548726 51549095 -49831426 - L1ME LINE L1 -358 5804 5410 1614 171 46 140 chr15 51549137 51549657 -49830864 - MER67D LTR ERV1 -43 471 1 373 266 98 23 chr15 51549662 51549876 -49830645 - L1ME LINE L1 -769 5377 5148 279 207 49 12 chr15 51550056 51550138 -49830383 - L1ME LINE L1 -1299 4847 4763 33898 72 6 11 chr15 51550293 51555749 -49824772 + L1PA6 LINE L1 727 6153 -1 1229 163 50 10 chr15 51555768 51556147 -49824374 - L1P4 LINE L1 -694 5472 5082 1249 315 157 22 chr15 51556202 51556984 -49823537 + L3 LINE CR1 637 1524 -53 317 331 46 26 chr15 51557080 51557231 -49823290 - MIR3 SINE MIR -10 198 45 242 330 45 28 chr15 51558237 51558413 -49822108 - L1ME LINE L1 -583 5583 5405 208 268 71 18 chr15 51559279 51559335 -49821186 - MIR SINE MIR -58 150 92 393 258 21 0 chr15 51560117 51560210 -49820311 - MER5A DNA MER1_type -85 104 10 26 0 0 0 chr15 51563322 51563348 -49817173 + AT_rich Low_complexity Low_complexity 1 26 0 236 328 74 8 chr15 51563686 51563808 -49816713 + L2 LINE L2 3173 3302 -11 432 294 75 19 chr15 51565368 51565528 -49814993 + MIR SINE MIR 13 181 -81 220 329 24 0 chr15 51566313 51566395 -49814126 + MIR3 SINE MIR 115 198 -10 184 286 0 0 chr15 51566721 51566770 -49813751 - MIR3 SINE MIR 0 208 160 206 160 0 120 chr15 51567199 51567249 -49813272 + L2 LINE L2 3234 3277 -36 205 143 86 0 chr15 51567223 51567258 -49813263 + MIR SINE MIR 207 244 -18 * 480 280 69 15 chr15 51570027 51570370 -49810151 + L1ME LINE L1 1357 1844 -5145 316 346 0 39 chr15 51570394 51570547 -49809974 + MLT1H LTR MaLR 57 203 -346 237 189 0 19 chr15 51570795 51570848 -49809673 + MLT1D LTR MaLR 447 498 -7 331 276 79 33 chr15 51570848 51571000 -49809521 + L1ME LINE L1 2104 2262 -4695 317 200 67 38 chr15 51571100 51571204 -49809317 - L1MB7 LINE L1 0 6184 6071 232 286 27 45 chr15 51571216 51571328 -49809193 - L1MEc LINE L1 -4403 1993 1884 630 236 51 0 chr15 51571361 51571518 -49809003 - L1ME1 LINE L1 -98 6068 5904 1252 185 78 4 chr15 51571518 51571750 -49808771 - MLT1A1 LTR MaLR 0 365 117 1786 194 97 25 chr15 51572926 51573358 -49807163 + L1MB1 LINE L1 4557 5019 -1127 1332 172 76 31 chr15 51573358 51573731 -49806790 + L1MB1 LINE L1 5221 5608 -560 * 6422 95 8 0 chr15 51573726 51574794 -49805727 - L1PA7 LINE L1 -615 5539 4467 4551 68 12 2 chr15 51574794 51575389 -49805132 + L1PA7 LINE L1 5539 6143 -11 1229 139 0 5 chr15 51575443 51575644 -49804877 + L1MB1 LINE L1 5593 5792 -542 2524 221 31 40 chr15 51575647 51576198 -49804323 - MLT2B3 LTR ERVL -7 547 2 2057 136 38 22 chr15 51576198 51576566 -49803955 + L1MB1 LINE L1 5787 6160 -8 266 281 24 54 chr15 51576737 51576904 -49803617 + L1 LINE L1 3863 4024 -2122 237 31 0 0 chr15 51576982 51577014 -49803507 + L1 LINE L1 4677 4708 -1438 2551 156 64 2 chr15 51577029 51577543 -49802978 + L1MA8 LINE L1 5734 6279 -12 264 221 76 38 chr15 51577561 51577719 -49802802 + L1 LINE L1 4255 4418 -1728 346 287 64 25 chr15 51577932 51578161 -49802360 + L1MC/D LINE L1 5272 5514 -650 343 250 33 76 chr15 51578906 51579090 -49801431 + L1MC5 LINE L1 7752 7927 -34 647 213 18 30 chr15 51580084 51580253 -49800268 - MER5A DNA MER1_type -1 188 22 297 303 83 9 chr15 51580501 51580610 -49799911 - L2 LINE L2 -1 3312 3196 294 261 321 0 chr15 51580657 51580791 -49799730 - MER91A DNA MER1_type -1 195 19 2152 58 0 0 chr15 51580799 51581058 -49799463 - AluY SINE Alu -52 259 1 233 243 153 9 chr15 51581493 51581604 -49798917 - L1ME LINE L1 -281 5883 5757 349 333 53 12 chr15 51582114 51582285 -49798236 + MER5B DNA MER1_type 1 178 0 275 262 12 12 chr15 51582321 51582405 -49798116 - MLT1L LTR MaLR -2 613 530 787 172 141 6 chr15 51582695 51582858 -49797663 - MER5A DNA MER1_type -3 186 2 1378 69 53 0 chr15 51582902 51583091 -49797430 - L1PA8 LINE L1 -1 6171 5973 1599 212 158 19 chr15 51583189 51583666 -49796855 + MLT1F LTR MaLR 1 542 0 391 233 0 86 chr15 51584046 51584114 -49796407 + MER5A DNA MER1_type 1 57 -132 1235 92 0 6 chr15 51584114 51584287 -49796234 + L1PB1 LINE L1 5978 6149 -2 391 233 0 86 chr15 51584287 51584334 -49796187 + MER5A DNA MER1_type 57 106 -83 471 257 46 26 chr15 51584407 51584559 -49795962 - MER5B DNA MER1_type 0 178 24 663 220 40 17 chr15 51584821 51584994 -49795527 + MER5B DNA MER1_type 1 177 -1 180 260 55 55 chr15 51585190 51585263 -49795258 + MIR SINE MIR 77 149 -113 265 335 162 17 chr15 51585344 51585517 -49795004 - MIR SINE MIR -63 199 2 2379 295 63 45 chr15 51586358 51587570 -49792951 + L2 LINE L2 1612 2846 -468 1667 181 84 14 chr15 51587621 51588342 -49792179 + L1MC3 LINE L1 6765 7641 -144 22 56 0 0 chr15 51588353 51588389 -49792132 + AT_rich Low_complexity Low_complexity 1 36 0 648 228 188 0 chr15 51588749 51588898 -49791623 - MER5A DNA MER1_type -11 178 2 297 0 0 0 chr15 51589027 51589060 -49791461 + (A)n Simple_repeat Simple_repeat 1 33 0 560 267 33 22 chr15 51589150 51589330 -49791191 + MLT1L LTR MaLR 424 605 -10 1100 291 25 65 chr15 51589333 51589842 -49790679 + L2 LINE L2 2823 3311 -2 2464 76 0 0 chr15 51590133 51590436 -49790085 - AluY SINE Alu -8 303 1 23 68 0 0 chr15 51591188 51591232 -49789289 + AT_rich Low_complexity Low_complexity 1 44 0 230 156 0 0 chr15 51591438 51591483 -49789038 + A-rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr15 51592806 51592830 -49787691 + AT_rich Low_complexity Low_complexity 1 24 0 2024 206 41 95 chr15 51592934 51593668 -49786853 - LTR8A LTR ERV1 0 727 34 2966 175 78 34 chr15 51594264 51594944 -49785577 + MER67C LTR ERV1 1 710 0 213 108 0 0 chr15 51595157 51595194 -49785327 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 286 241 51 0 chr15 51595753 51595832 -49784689 + MER117 DNA MER1_type 17 99 -98 2435 183 22 10 chr15 51596048 51596546 -49783975 + L1P3 LINE L1 1 504 -5371 23642 148 20 19 chr15 51596563 51598611 -49781910 + L1P3 LINE L1 797 2843 -3626 1714 113 0 4 chr15 51598611 51598841 -49781680 - AluY SINE Alu -22 289 61 23642 148 20 19 chr15 51598841 51600012 -49780509 + L1P3 LINE L1 2843 4012 -2457 369 0 0 0 chr15 51600012 51600053 -49780468 + (CA)n Simple_repeat Simple_repeat 2 42 0 23642 148 20 19 chr15 51600053 51601795 -49778726 + L1P3 LINE L1 4012 5755 -714 196 230 18 26 chr15 51601908 51602021 -49778500 + GA-rich Low_complexity Low_complexity 1 112 0 192 163 0 0 chr15 51602049 51602092 -49778429 + G-rich Low_complexity Low_complexity 1 43 0 6641 74 7 1 chr15 51602176 51603336 -49777185 + L1PA6 LINE L1 4990 6153 -1 1145 163 50 10 chr15 51603355 51603734 -49776787 - L1P4 LINE L1 -694 5472 5082 1225 318 156 20 chr15 51603789 51604571 -49775950 + L3 LINE CR1 637 1524 -53 321 331 46 26 chr15 51604667 51604818 -49775703 - MIR3 SINE MIR -10 198 45 366 368 53 10 chr15 51605825 51606034 -49774487 - L1ME LINE L1 -583 5583 5366 206 268 71 18 chr15 51606867 51606923 -49773598 - MIR SINE MIR -58 150 92 396 258 21 0 chr15 51607705 51607798 -49772723 - MER5A DNA MER1_type -85 104 10 26 0 0 0 chr15 51610911 51610937 -49769584 + AT_rich Low_complexity Low_complexity 1 26 0 239 328 74 8 chr15 51611275 51611397 -49769124 + L2 LINE L2 3173 3302 -11 432 294 75 19 chr15 51612957 51613117 -49767404 + MIR SINE MIR 13 181 -81 214 329 24 0 chr15 51613903 51613985 -49766536 + MIR3 SINE MIR 115 198 -10 183 286 0 0 chr15 51614311 51614360 -49766161 - MIR3 SINE MIR 0 208 160 210 160 0 120 chr15 51614789 51614839 -49765682 + L2 LINE L2 3234 3277 -36 207 143 86 0 chr15 51614813 51614848 -49765673 + MIR SINE MIR 207 244 -18 * 432 281 50 19 chr15 51617659 51617960 -49762561 + L1M4b LINE L1 940 1427 -5294 349 275 74 34 chr15 51618420 51618591 -49761930 + L1M4b LINE L1 1685 1845 -4695 294 195 81 46 chr15 51618708 51618795 -49761726 - L1ME1 LINE L1 -6 6160 6071 319 298 24 40 chr15 51618807 51618931 -49761590 - L1MEc LINE L1 -4403 1993 1872 583 236 51 0 chr15 51618952 51619109 -49761412 - L1ME1 LINE L1 -98 6068 5904 1170 185 78 4 chr15 51619109 51619341 -49761180 - MLT1A1 LTR MaLR 0 365 117 1660 194 97 25 chr15 51620512 51620944 -49759577 + L1M3 LINE L1 4557 5019 -1127 1240 171 76 31 chr15 51620944 51621317 -49759204 + L1M3 LINE L1 5221 5608 -560 * 16898 31 1 0 chr15 51621312 51623566 -49756955 - L1P1 LINE L1 -616 5539 3284 191 213 81 125 chr15 51623697 51623833 -49756688 - L2 LINE L2 -1076 2238 2109 774 278 50 21 chr15 51624315 51624556 -49755965 + MIR SINE MIR 1 248 -14 313 356 106 15 chr15 51624927 51625059 -49755462 - MIR3 SINE MIR -54 154 11 1017 181 25 0 chr15 51625672 51625876 -49754645 + L1MD2 LINE L1 6150 6358 -1 297 217 72 12 chr15 51626002 51626085 -49754436 - MIR SINE MIR -93 169 82 450 295 125 36 chr15 51626090 51626314 -49754207 + LTR67 LTR ERVL 2 245 -312 315 266 38 25 chr15 51626429 51626587 -49753934 + LTR67 LTR ERVL 394 553 -4 1931 183 19 22 chr15 51628831 51629197 -49751324 + MLT1A1 LTR MaLR 1 365 0 443 286 29 29 chr15 51629897 51630072 -49750449 - MIR3 SINE MIR -9 199 25 195 255 20 0 chr15 51630358 51630409 -49750112 - MER5A DNA MER1_type 0 189 138 195 42 0 0 chr15 51630654 51630678 -49749843 + (TCTA)n Simple_repeat Simple_repeat 1 24 0 5664 109 30 24 chr15 51630707 51631780 -49748741 - L1PA13 LINE L1 -4 6159 5070 318 304 0 22 chr15 51631911 51632003 -49748518 + L1MC4 LINE L1 6614 6703 -1339 * 327 227 45 23 chr15 51631945 51632033 -49748488 - L1MC4 LINE L1 -1339 6703 6614 2034 107 17 10 chr15 51632037 51632326 -49748195 - AluSc SINE Alu -18 291 1 1252 150 41 59 chr15 51632593 51632932 -49747589 - L1MA4A LINE L1 -245 6760 6428 * 3484 178 36 1 chr15 51632931 51633677 -49746844 - L1MA4A LINE L1 -780 6068 5297 * 10661 207 66 17 chr15 51633660 51634300 -49746221 - L1MA4A LINE L1 -4102 2747 2139 1674 201 7 3 chr15 51634300 51634594 -49745927 - AluJb SINE Alu -17 295 1 10661 207 66 17 chr15 51634594 51636570 -49743951 - L1MA4A LINE L1 -4710 2139 4 271 266 156 23 chr15 51636704 51636877 -49743644 - MIR3 SINE MIR -5 203 8 726 340 84 60 chr15 51637411 51637814 -49742707 - L2 LINE L2 0 3272 2860 828 335 118 30 chr15 51638551 51639384 -49741137 + L2 LINE L2 2374 3272 0 3590 182 67 8 chr15 51639527 51640301 -49740220 - L1MB8 LINE L1 -6 6172 5353 1290 156 26 136 chr15 51641083 51641422 -49739099 + AluJo SINE Alu 11 312 0 221 308 217 0 chr15 51642046 51642166 -49738355 + MIR SINE MIR 61 206 -56 201 374 116 13 chr15 51642964 51643119 -49737402 - L2 LINE L2 -5 3267 3097 182 304 72 0 chr15 51643519 51643588 -49736933 - MIR SINE MIR -13 249 176 2198 115 0 3 chr15 51643736 51644031 -49736490 - AluSx SINE Alu -18 294 1 2782 246 123 0 chr15 51644752 51645543 -49734978 + L2 LINE L2 1880 2767 -547 1092 229 110 48 chr15 51645641 51646205 -49734316 - L1MC4 LINE L1 0 8042 7444 445 269 113 60 chr15 51646856 51647306 -49733215 - L1ME LINE L1 -330 5791 5318 792 223 141 61 chr15 51647984 51648311 -49732210 + MLT1A1 LTR MaLR 13 365 0 391 294 88 22 chr15 51648354 51648490 -49732031 + L2 LINE L2 3127 3271 -1 224 242 132 33 chr15 51649285 51649376 -49731145 - MIR3 SINE MIR -2 206 107 2045 192 129 2 chr15 51649740 51650188 -49730333 + MLT1D LTR MaLR 1 505 0 254 312 56 68 chr15 51650288 51650538 -49729983 + L2 LINE L2 2882 3128 -144 4318 180 40 21 chr15 51650677 51651379 -49729142 - L1MB3 LINE L1 0 6183 5440 486 96 0 0 chr15 51651379 51651452 -49729069 + (TAG)n Simple_repeat Simple_repeat 3 75 0 4318 180 40 21 chr15 51651452 51652001 -49728520 - L1MB3 LINE L1 -743 5440 4903 2144 81 36 36 chr15 51652775 51653082 -49727439 - AluSg SINE Alu -3 307 1 229 89 44 0 chr15 51654218 51654263 -49726258 + (TA)n Simple_repeat Simple_repeat 1 47 0 243 0 0 0 chr15 51654264 51654291 -49726230 + (GA)n Simple_repeat Simple_repeat 2 28 0 345 289 21 42 chr15 51654441 51654583 -49725938 + MIR SINE MIR 2 140 -122 3329 260 58 53 chr15 51654777 51655419 -49725102 + L1MEc LINE L1 41 678 -5718 393 84 0 0 chr15 51655419 51655490 -49725031 + L1MA7 LINE L1 6221 6291 0 3329 260 58 53 chr15 51655490 51656435 -49724086 + L1MEc LINE L1 678 1636 -4760 22503 46 44 2 chr15 51656442 51659443 -49721078 + L1P LINE L1 2 3126 -3020 2186 149 26 11 chr15 51659556 51660013 -49720508 + L1PA8 LINE L1 5704 6167 -5 34 24 0 0 chr15 51660013 51660054 -49720467 + AT_rich Low_complexity Low_complexity 1 41 0 466 292 35 28 chr15 51660334 51660478 -49720043 - MIR3 SINE MIR -13 195 51 234 62 0 0 chr15 51662242 51662274 -49718247 + (GA)n Simple_repeat Simple_repeat 1 32 0 619 239 0 22 chr15 51662847 51662985 -49717536 + MER58A DNA MER1_type 1 135 0 21 0 0 0 chr15 51663348 51663369 -49717152 + AT_rich Low_complexity Low_complexity 1 21 0 290 242 30 0 chr15 51663419 51663485 -49717036 - L2 LINE L2 0 3313 3246 2155 163 25 50 chr15 51663731 51664168 -49716353 - MSTB LTR MaLR 0 426 1 4521 190 35 3 chr15 51664168 51665047 -49715474 - MSTB-int LTR MaLR 0 1651 745 2536 117 3 16 chr15 51665066 51665433 -49715088 - THE1B LTR MaLR 0 364 3 5077 122 5 5 chr15 51665435 51666196 -49714325 - THE1B-int LTR MaLR 0 1580 820 1697 218 45 16 chr15 51666224 51666670 -49713851 + MLT1C LTR MaLR 9 467 0 233 168 84 11 chr15 51667459 51667554 -49712967 + (TG)n Simple_repeat Simple_repeat 1 102 0 21 0 0 0 chr15 51668183 51668204 -49712317 + AT_rich Low_complexity Low_complexity 1 21 0 365 153 45 6 chr15 51668220 51668377 -49712144 + (TTATA)n Simple_repeat Simple_repeat 5 167 0 323 326 80 17 chr15 51668654 51668829 -49711692 - MIR3 SINE MIR -7 201 16 209 191 11 146 chr15 51670034 51670083 -49710438 - MIR3 SINE MIR -46 162 129 2408 43 7 7 chr15 51670083 51670383 -49710138 + AluY SINE Alu 1 300 -11 209 191 11 146 chr15 51670383 51670422 -49710099 - MIR3 SINE MIR -79 129 86 710 265 90 37 chr15 51670432 51670809 -49709712 - MLT1I LTR MaLR -10 399 3 224 342 13 26 chr15 51670811 51670887 -49709634 - MIR SINE MIR -118 90 16 239 88 0 0 chr15 51672025 51672059 -49708462 + LTR33A LTR ERVL 490 523 0 1688 251 117 41 chr15 51672177 51673010 -49707511 + L2 LINE L2 639 3304 -9 1158 250 128 16 chr15 51673217 51673593 -49706928 + LTR16C LTR ERVL 74 491 0 2978 252 308 66 chr15 51674421 51676001 -49704520 + L2 LINE L2 41 1237 -2076 316 180 33 77 chr15 51676001 51676105 -49704416 - MLT1E1 LTR MaLR -456 198 52 2978 252 308 66 chr15 51676105 51676128 -49704393 + L2 LINE L2 1237 1253 -2060 2493 129 3 3 chr15 51676128 51676492 -49704029 + THE1B LTR MaLR 1 364 0 2978 252 308 66 chr15 51676492 51677196 -49703325 + L2 LINE L2 1253 3038 -275 224 317 0 0 chr15 51677470 51677530 -49702991 - L2 LINE L2 0 3272 3213 285 370 20 14 chr15 51677555 51677701 -49702820 - MIR3 SINE MIR -58 150 4 283 203 0 62 chr15 51678078 51678142 -49702379 - MIR SINE MIR -14 248 189 233 333 177 0 chr15 51679797 51679893 -49700628 - L3 LINE CR1 -2 1575 1463 2700 19 0 3 chr15 51680412 51680719 -49699802 - AluY SINE Alu -5 306 1 24 0 0 0 chr15 51681221 51681245 -49699276 + AT_rich Low_complexity Low_complexity 1 24 0 1793 152 3 28 chr15 51681331 51681621 -49698900 - AluJo SINE Alu -21 291 9 183 278 134 10 chr15 51681709 51681806 -49698715 + MIR SINE MIR 8 116 -146 617 302 94 0 chr15 51682325 51682517 -49698004 - MIR SINE MIR -51 211 2 282 371 30 23 chr15 51682530 51682662 -49697859 - L2 LINE L2 -1 3312 3180 727 212 46 131 chr15 51682692 51682975 -49697546 - MIR SINE MIR 0 262 4 326 347 116 16 chr15 51683048 51683290 -49697231 - L2 LINE L2 -189 3083 2818 703 258 70 8 chr15 51683474 51683718 -49696803 + MIR SINE MIR 2 260 -2 2276 57 0 0 chr15 51684755 51685081 -49695440 + AluY SINE Alu 1 326 0 1193 91 13 0 chr15 51685081 51685258 -49695263 + AluSg/x SINE Alu 126 304 0 225 94 0 0 chr15 51685581 51685613 -49694908 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1112 88 13 19 chr15 51685613 51685795 -49694726 + AluSg/x SINE Alu 126 306 0 474 216 24 8 chr15 51686048 51686173 -49694348 - MER20 DNA MER1_type -2 217 91 475 159 21 97 chr15 51686178 51686323 -49694198 + MLT1C LTR MaLR 6 139 -328 2462 134 29 2 chr15 51686337 51686826 -49693695 - L1MA9 LINE L1 -609 5682 5184 2021 150 13 24 chr15 51686836 51686920 -49693601 + L1MA9 LINE L1 5706 5789 -523 351 0 0 0 chr15 51686920 51686959 -49693562 + (CA)n Simple_repeat Simple_repeat 2 40 0 2021 150 13 24 chr15 51686959 51687254 -49693267 + L1MA9 LINE L1 5789 6081 -231 385 202 11 0 chr15 51687260 51687349 -49693172 + L1MA9 LINE L1 6184 6273 -39 957 174 128 114 chr15 51687377 51687728 -49692793 + MLT1C LTR MaLR 112 467 0 541 143 0 0 chr15 51687733 51687817 -49692704 - MER20 DNA MER1_type -135 84 1 387 300 50 38 chr15 51688407 51688804 -49691717 - L1M4 LINE L1 -1258 4888 4487 1424 150 66 51 chr15 51688882 51689156 -49691365 + AluSx SINE Alu 14 291 -21 370 249 81 69 chr15 51689864 51690037 -49690484 + L2 LINE L2 2886 3060 -212 25 31 0 0 chr15 51690121 51690153 -49690368 + AT_rich Low_complexity Low_complexity 1 32 0 320 336 32 24 chr15 51690222 51690347 -49690174 + L2 LINE L2 3116 3241 -31 1811 153 0 49 chr15 51690368 51690676 -49689845 + AluJb SINE Alu 1 293 -19 266 73 24 0 chr15 51690716 51690757 -49689764 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 22 103 0 0 chr15 51691401 51691479 -49689042 + AT_rich Low_complexity Low_complexity 1 78 0 309 109 0 0 chr15 51692388 51692434 -49688087 + (CA)n Simple_repeat Simple_repeat 2 47 0 1258 163 19 116 chr15 51692970 51693289 -49687232 + AluJo SINE Alu 5 292 -20 49 18 0 0 chr15 51693313 51693369 -49687152 + AT_rich Low_complexity Low_complexity 1 56 0 30205 49 14 2 chr15 51694814 51694904 -49685617 + L1PA8A LINE L1 1310 1397 -4734 180 0 0 0 chr15 51694904 51694924 -49685597 + (AAATG)n Simple_repeat Simple_repeat 5 24 0 30205 49 14 2 chr15 51694924 51699241 -49681280 + L1PA8A LINE L1 1397 5766 -365 4526 12 2 0 chr15 51699341 51699859 -49680662 + L1PA2 LINE L1 5634 6152 -3 1812 224 63 73 chr15 51699862 51700773 -49679748 + L1ME1 LINE L1 1621 2521 -3875 2288 223 43 21 chr15 51700917 51701326 -49679195 + L1ME1 LINE L1 2480 2913 -3302 1378 220 10 20 chr15 51701326 51701630 -49678891 + AluJo SINE Alu 1 301 -11 2288 223 43 21 chr15 51701630 51701948 -49678573 + L1ME1 LINE L1 2913 3223 -2992 * 2862 192 27 95 chr15 51701943 51702881 -49677640 + L1MA9 LINE L1 5396 6269 -43 22 0 0 0 chr15 51702888 51702910 -49677611 + AT_rich Low_complexity Low_complexity 1 22 0 1106 251 64 6 chr15 51702919 51703389 -49677132 + L1ME1 LINE L1 3210 3706 -2509 366 98 0 0 chr15 51703402 51703463 -49677058 - L1PA16 LINE L1 -9 6157 6097 295 98 0 0 chr15 51703464 51703505 -49677016 - L1PA16 LINE L1 -107 6059 6019 3012 229 105 40 chr15 51703611 51704319 -49676202 + L1ME1 LINE L1 4355 5016 -1219 1622 195 3 3 chr15 51704319 51704617 -49675904 + AluJo SINE Alu 1 298 -14 3012 229 105 40 chr15 51704617 51705627 -49674894 + L1ME1 LINE L1 5016 6191 -44 1353 203 37 69 chr15 51706354 51706729 -49673792 + L1MDa LINE L1 19 381 -6159 9624 177 20 43 chr15 51706753 51709484 -49671037 + L1PB1 LINE L1 2703 5495 -656 5137 36 2 2 chr15 51709484 51710097 -49670424 + L1PA3 LINE L1 5540 6152 -3 9624 177 20 43 chr15 51710097 51710530 -49669991 + L1PB1 LINE L1 5495 5795 -356 183 80 0 0 chr15 51710530 51710555 -49669966 + (TA)n Simple_repeat Simple_repeat 1 25 0 9624 177 20 43 chr15 51710555 51710904 -49669617 + L1PB1 LINE L1 5795 6151 0 1308 253 107 24 chr15 51710914 51711528 -49668993 + L1MDa LINE L1 393 1121 -5419 * 4253 171 47 23 chr15 51711506 51712775 -49667746 + L1MB2 LINE L1 5269 6563 -2 1342 148 22 30 chr15 51712852 51712927 -49667594 - L1MC/D LINE L1 -681 5561 5487 1360 84 59 5 chr15 51712927 51713129 -49667392 - L1PA8 LINE L1 -3 6169 5957 1342 148 22 30 chr15 51713129 51713323 -49667198 - L1MC/D LINE L1 -755 5487 5294 4304 97 29 5 chr15 51714552 51715180 -49665341 + THE1B-int LTR MaLR 938 1580 0 2825 85 0 0 chr15 51715180 51715544 -49664977 + THE1B LTR MaLR 1 364 0 206 279 98 16 chr15 51715702 51715763 -49664758 - L2 LINE L2 -86 3186 3121 187 359 109 16 chr15 51715932 51716124 -49664397 - L2 LINE L2 -21 3292 3083 774 110 37 22 chr15 51716456 51716592 -49663929 - L1PA7 LINE L1 0 6154 6017 3975 47 0 0 chr15 51716632 51717117 -49663404 - L1PA4 LINE L1 -3 6152 5668 623 148 0 16 chr15 51717117 51717239 -49663282 - L1PA8 LINE L1 -106 6066 5947 312 283 108 18 chr15 51717391 51717557 -49662964 - L1MC4a LINE L1 -1894 5914 5734 1128 279 73 22 chr15 51717560 51717969 -49662552 + MLT1J2 LTR MaLR 7 436 -14 620 178 126 13 chr15 51718012 51718281 -49662240 + MER92B LTR ERV1 7 347 -289 288 260 0 14 chr15 51718819 51718892 -49661629 + L2 LINE L2 3241 3312 -1 213 182 26 156 chr15 51719371 51719448 -49661073 + MIR3 SINE MIR 131 197 -11 786 283 85 20 chr15 51719545 51719945 -49660576 + LTR16A LTR ERVL 25 450 0 225 295 26 0 chr15 51719981 51720059 -49660462 + MARNA DNA Mariner 455 534 -52 473 265 33 105 chr15 51720861 51721076 -49659445 + LTR16A1 LTR ERVL 155 301 -156 2958 3 0 0 chr15 51721076 51721394 -49659127 - AluYb8 SINE Alu 0 318 1 473 265 33 105 chr15 51721394 51721540 -49658981 + LTR16A1 LTR ERVL 301 456 -1 268 288 113 12 chr15 51721664 51721744 -49658777 - L2 LINE L2 -48 3224 3137 21 57 0 0 chr15 51721994 51722029 -49658492 + AT_rich Low_complexity Low_complexity 1 35 0 184 172 35 0 chr15 51722038 51722096 -49658425 + (TA)n Simple_repeat Simple_repeat 2 61 0 397 265 39 6 chr15 51722138 51722319 -49658202 + L1MC4a LINE L1 6073 6259 -1549 1904 249 109 73 chr15 51722569 51723858 -49656663 + L1MC4 LINE L1 6705 8040 -2 233 333 108 0 chr15 51724420 51724522 -49655999 - MIR3 SINE MIR -32 176 64 337 217 0 0 chr15 51724563 51724623 -49655898 + MIR SINE MIR 64 123 -139 737 212 39 13 chr15 51725233 51725464 -49655057 + L1ME1 LINE L1 5724 5960 -206 245 54 27 0 chr15 51725490 51725527 -49654994 + MSTB1 LTR MaLR 395 432 0 273 197 127 0 chr15 51725536 51725607 -49654914 - L1ME1 LINE L1 -133 6033 5954 2030 144 45 0 chr15 51725607 51725960 -49654561 - MSTB1 LTR MaLR -63 369 1 416 242 17 8 chr15 51725962 51726082 -49654439 + L1ME1 LINE L1 6040 6160 -6 8678 35 1 0 chr15 51726106 51727354 -49653167 - L1PA5 LINE L1 -629 5525 4276 5113 39 0 2 chr15 51727354 51727959 -49652562 + L1PA5 LINE L1 5536 6143 -11 2177 114 7 0 chr15 51728502 51728799 -49651722 + AluSx SINE Alu 1 299 -13 288 53 0 0 chr15 51728906 51728944 -49651577 + (GA)n Simple_repeat Simple_repeat 2 39 0 310 297 167 16 chr15 51728997 51729070 -49651451 - L1M4 LINE L1 -2411 3735 3674 1218 160 0 9 chr15 51729070 51729289 -49651232 + L1PB4 LINE L1 5940 6156 0 310 297 167 16 chr15 51729289 51729407 -49651114 - L1M4 LINE L1 -2472 3674 3515 31 44 0 0 chr15 51729520 51729565 -49650956 + AT_rich Low_complexity Low_complexity 1 45 0 719 300 71 62 chr15 51731512 51731992 -49648529 + L2 LINE L2 2829 3312 -1 280 279 29 10 chr15 51732080 51732184 -49648337 + GA-rich Low_complexity Low_complexity 2 107 0 765 273 88 4 chr15 51732832 51733070 -49647451 + MIR SINE MIR 1 258 -4 2362 71 122 6 chr15 51735547 51735883 -49644638 - THE1C LTR MaLR 0 375 1 2193 157 86 0 chr15 51736098 51736492 -49644029 + MSTA LTR MaLR 1 428 0 3821 176 8 3 chr15 51736492 51737221 -49643300 + MSTA-int LTR MaLR 1 733 -918 225 171 0 0 chr15 51737221 51737256 -49643265 + Alu SINE Alu 248 282 -20 213 65 0 0 chr15 51737259 51737290 -49643231 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 210 118 0 0 chr15 51738792 51738826 -49641695 + (T)n Simple_repeat Simple_repeat 1 34 0 274 280 67 0 chr15 51739868 51739943 -49640578 - L2 LINE L2 -36 3236 3157 266 329 114 26 chr15 51740209 51740437 -49640084 - L2 LINE L2 -1275 2039 1792 435 202 211 0 chr15 51740756 51740870 -49639651 + MER104 DNA Tc2 38 175 -5 2292 80 7 13 chr15 51740997 51741298 -49639223 + AluSx SINE Alu 1 299 -13 489 296 34 34 chr15 51741318 51741438 -49639083 + MER5A DNA MER1_type 10 132 -57 1561 191 3 26 chr15 51741438 51741741 -49638780 + AluJo SINE Alu 1 296 -16 489 296 34 34 chr15 51741741 51741799 -49638722 + MER5A DNA MER1_type 131 188 -1 368 273 34 0 chr15 51743035 51743123 -49637398 - LTR16C LTR ERVL -14 477 387 1349 224 84 6 chr15 51743195 51743530 -49636991 + LTR16A LTR ERVL 89 449 -1 964 259 148 14 chr15 51743531 51743821 -49636700 - LTR16C LTR ERVL -111 380 52 289 256 136 24 chr15 51744021 51744146 -49636375 - MIR SINE MIR -4 258 120 4447 86 22 5 chr15 51744240 51744822 -49635699 - L1PA11 LINE L1 -1 6173 5582 606 88 0 0 chr15 51744823 51744903 -49635618 - L1PA11 LINE L1 -644 5524 5445 1483 163 23 47 chr15 51746198 51746499 -49634022 - AluJo SINE Alu -18 294 1 192 152 0 0 chr15 51747223 51747256 -49633265 + A-rich Low_complexity Low_complexity 1 33 0 5228 18 0 0 chr15 51747343 51747903 -49632618 + L1PA3 LINE L1 5593 6152 -3 2095 122 0 29 chr15 51748887 51749199 -49631322 - AluSx SINE Alu -9 303 1 290 25 0 25 chr15 51749221 51749238 -49631283 + (CA)n Simple_repeat Simple_repeat 1 55 0 290 25 0 25 chr15 51749238 51749278 -49631243 + (CA)n Simple_repeat Simple_repeat 2 40 0 1984 127 3 17 chr15 51749723 51750023 -49630498 + AluJo SINE Alu 1 296 -16 325 353 104 30 chr15 51750242 51750636 -49629885 + L2 LINE L2 1698 2120 -1194 565 300 89 4 chr15 51750756 51751003 -49629518 + LTR16C LTR ERVL 224 491 0 494 354 49 30 chr15 51751007 51751479 -49629042 + L2 LINE L2 2143 2623 -691 683 216 8 93 chr15 51751483 51751639 -49628882 + MIR SINE MIR 6 137 -125 2346 84 10 16 chr15 51751639 51751950 -49628571 + AluY SINE Alu 1 309 -2 683 216 8 93 chr15 51751950 51752029 -49628492 + MIR SINE MIR 137 221 -41 6345 118 5 2 chr15 51752030 51752529 -49627992 + L1PA13 LINE L1 4776 5272 -891 2006 132 7 3 chr15 51752529 51752816 -49627705 + AluSx SINE Alu 1 288 -24 6345 118 5 2 chr15 51752816 51753714 -49626807 + L1PA13 LINE L1 5272 6163 0 270 194 42 28 chr15 51753953 51754025 -49626496 - MER116 DNA Mariner -7 73 1 1745 173 3 13 chr15 51755320 51755620 -49624901 - AluJo SINE Alu -15 297 1 318 169 292 11 chr15 51755840 51755929 -49624592 - MER81 DNA DNA 0 114 1 1371 164 14 5 chr15 51756900 51757114 -49623407 + MER20 DNA MER1_type 4 219 0 1988 66 8 0 chr15 51757337 51757578 -49622943 + L1PA7 LINE L1 5912 6154 0 378 74 0 0 chr15 51759481 51759535 -49620986 + (TA)n Simple_repeat Simple_repeat 1 54 0 225 258 237 41 chr15 51759706 51759803 -49620718 + MIR SINE MIR 31 146 -62 568 254 12 17 chr15 51759805 51759978 -49620543 + MER117 DNA MER1_type 4 175 -22 358 234 21 76 chr15 51760040 51760074 -49620447 - L1M4c LINE L1 -4791 2168 2134 213 65 0 0 chr15 51760074 51760105 -49620416 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 1849 122 42 0 chr15 51760111 51760374 -49620147 - AluSx SINE Alu -38 274 1 358 234 21 76 chr15 51760374 51760477 -49620044 - L1M4c LINE L1 -4830 2129 2032 2963 127 97 25 chr15 51760477 51760609 -49619912 - L1MA9 LINE L1 0 6312 6191 246 62 0 0 chr15 51760609 51760641 -49619880 + (TG)n Simple_repeat Simple_repeat 1 32 0 2963 127 97 25 chr15 51760641 51761067 -49619454 - L1MA9 LINE L1 -121 6191 5714 2679 214 62 56 chr15 51761092 51762040 -49618481 + MER21B LTR ERV1 9 862 -1 1517 145 17 0 chr15 51762048 51762289 -49618232 - L1MA9 LINE L1 -586 5726 5482 712 218 34 0 chr15 51762278 51762457 -49618064 - L1M4c LINE L1 -4896 2063 1879 * 6296 204 101 53 chr15 51762564 51764344 -49616177 - L1M4c LINE L1 -4985 1870 11 687 97 10 19 chr15 51765105 51765208 -49615313 + L1PA7 LINE L1 3 104 -6357 * 31657 102 12 26 chr15 51765196 51767567 -49612954 + L1PA7 LINE L1 427 2829 -3640 2745 22 0 10 chr15 51767567 51767879 -49612642 - AluYb8 SINE Alu -9 309 1 31657 102 12 26 chr15 51767879 51770871 -49609650 + L1PA7 LINE L1 2829 5795 -674 2247 112 3 0 chr15 51770871 51771165 -49609356 + AluSg SINE Alu 1 295 -15 31657 102 12 26 chr15 51771165 51771829 -49608692 + L1PA7 LINE L1 5795 6467 -2 2032 191 8 14 chr15 51772055 51772422 -49608099 + MLT1A1 LTR MaLR 1 365 0 240 333 69 0 chr15 51772948 51773020 -49607501 - L2 LINE L2 -43 3229 3153 42037 61 5 2 chr15 51773050 51779179 -49601342 + L1PA5 LINE L1 11 6154 0 180 152 0 0 chr15 51779226 51779259 -49601262 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 2405 183 38 32 chr15 51780268 51780770 -49599751 + MLT1D LTR MaLR 1 505 0 203 207 118 96 chr15 51781448 51781583 -49598938 - MIR SINE MIR -60 202 65 486 88 0 0 chr15 51782187 51782255 -49598266 + (CATATA)n Simple_repeat Simple_repeat 4 71 0 888 130 37 74 chr15 51782255 51782394 -49598127 + MER20 DNA MER1_type 64 198 -21 1777 163 7 17 chr15 51782394 51782694 -49597827 + AluJb SINE Alu 1 297 -15 888 130 37 74 chr15 51782694 51782716 -49597805 + MER20 DNA MER1_type 198 219 0 728 235 59 110 chr15 51782846 51782997 -49597524 - MIR SINE MIR -1 261 129 2306 128 0 0 chr15 51782997 51783310 -49597211 + AluSq SINE Alu 1 313 0 728 235 59 110 chr15 51783310 51783430 -49597091 - MIR SINE MIR -133 129 4 267 258 91 76 chr15 51783746 51783772 -49596749 + MLT1J LTR MaLR 378 402 -109 615 229 34 50 chr15 51783772 51783951 -49596570 - MER69A DNA AcHobo -1 176 1 267 258 91 76 chr15 51783951 51784056 -49596465 + MLT1J LTR MaLR 402 511 0 362 156 0 16 chr15 51784595 51784659 -49595862 + HAL1 LINE L1 1598 1660 -847 6150 124 9 9 chr15 51785472 51785755 -49594766 + L1PA15 LINE L1 4374 4656 -1509 2109 122 3 3 chr15 51785755 51786043 -49594478 + AluSx SINE Alu 1 288 -24 6150 124 9 9 chr15 51786043 51787563 -49592958 + L1PA15 LINE L1 4655 6165 0 458 269 131 7 chr15 51787623 51787768 -49592753 + MIR3 SINE MIR 36 198 -10 9028 167 31 35 chr15 51788346 51790345 -49590176 + L1MA7 LINE L1 3313 5320 -971 2373 71 10 7 chr15 51790345 51790655 -49589866 - AluY SINE Alu 0 311 1 9028 167 31 35 chr15 51790655 51790903 -49589618 + L1MA7 LINE L1 5316 5564 -723 1525 142 61 45 chr15 51790903 51791233 -49589288 + L1MA7 LINE L1 5946 6280 -11 4360 43 2 2 chr15 51792062 51792599 -49587922 + L1PA4 LINE L1 5617 6153 -2 385 308 8 22 chr15 51793239 51793428 -49587093 + MIR SINE MIR 24 206 -56 266 152 22 0 chr15 51795129 51795175 -49585346 - L2 LINE L2 0 3313 3267 182 206 29 0 chr15 51795147 51795181 -49585340 - MIR SINE MIR -13 249 215 * 288 330 0 18 chr15 51795360 51795469 -49585052 - MIR SINE MIR -125 137 31 1987 103 80 20 chr15 51795887 51796237 -49584284 - THE1C LTR MaLR -2 373 3 350 281 165 6 chr15 51796272 51796436 -49584085 + MLT1K LTR MaLR 171 360 -228 351 214 34 43 chr15 51796496 51796613 -49583908 + MLT1K LTR MaLR 466 581 -7 375 224 132 17 chr15 51796627 51796801 -49583720 - Charlie7 DNA MER1_type -1 2611 2418 310 230 30 20 chr15 51796773 51796873 -49583648 - Charlie7 DNA MER1_type -2510 102 2 * 21 0 0 0 chr15 51797029 51797050 -49583471 + AT_rich Low_complexity Low_complexity 1 21 0 361 279 139 24 chr15 51798042 51798207 -49582314 - MIR SINE MIR -58 204 21 546 167 107 130 chr15 51798487 51798565 -49581956 - MER33 DNA MER1_type -2289 296 218 1857 120 10 17 chr15 51798565 51798856 -49581665 - AluJb SINE Alu -23 289 1 546 167 107 130 chr15 51798856 51799076 -49581445 - MER33 DNA MER1_type -2367 218 5 231 267 50 25 chr15 51799375 51799495 -49581026 + L1ME LINE L1 5762 5884 -286 1925 112 0 32 chr15 51799810 51800095 -49580426 - AluSx SINE Alu 0 312 37 342 181 6 17 chr15 51800561 51800648 -49579873 + L1MC4 LINE L1 7909 8040 0 2420 81 3 3 chr15 51800919 51801226 -49579295 - AluSp SINE Alu -6 307 1 1084 213 0 14 chr15 51802957 51803178 -49577343 - MER20 DNA MER1_type 0 219 2 273 229 119 0 chr15 51803324 51803433 -49577088 - L1ME LINE L1 -382 5739 5618 440 238 95 24 chr15 51803526 51803652 -49576869 + L2 LINE L2 3179 3313 0 1971 138 10 14 chr15 51803845 51804141 -49576380 + AluSq SINE Alu 6 300 -13 1041 238 147 25 chr15 51804524 51804877 -49575644 - MSTD LTR MaLR 0 396 1 748 272 6 0 chr15 51805502 51805671 -49574850 - MER5B DNA MER1_type 0 178 9 673 172 43 0 chr15 51805924 51806040 -49574481 + AluJb SINE Alu 171 291 -21 182 269 0 0 chr15 51806335 51806387 -49574134 + L2 LINE L2 3262 3313 0 239 222 0 122 chr15 51806736 51806826 -49573695 - L2 LINE L2 -12 3260 3182 * 346 342 118 0 chr15 51806815 51806976 -49573545 + MIR SINE MIR 35 214 -48 195 253 114 25 chr15 51806993 51807072 -49573449 - MIR SINE MIR -71 191 106 1584 189 4 4 chr15 51807138 51807413 -49573108 - AluJo SINE Alu -31 281 7 223 270 130 30 chr15 51808387 51808487 -49572034 - L2 LINE L2 0 3272 3163 511 226 58 32 chr15 51809451 51809606 -49570915 - MIR SINE MIR -2 260 102 212 194 143 82 chr15 51809727 51809825 -49570696 + MIR SINE MIR 77 180 -82 1078 172 5 54 chr15 51810060 51810281 -49570240 + AluJb SINE Alu 85 294 -18 589 214 166 70 chr15 51812174 51812403 -49568118 - MIR SINE MIR -6 256 6 268 179 317 57 chr15 51812701 51812824 -49567697 + MER5A DNA MER1_type 34 188 -1 249 307 93 0 chr15 51813630 51813705 -49566816 + L2 LINE L2 3231 3312 -1 3729 192 96 24 chr15 51814003 51815109 -49565412 + L1MC4 LINE L1 6828 7995 0 981 184 60 0 chr15 51815786 51816036 -49564485 - MER33 DNA MER1_type 0 324 60 2534 212 81 23 chr15 51816097 51816846 -49563675 + L1MC4 LINE L1 7250 8042 0 462 250 20 0 chr15 51816847 51816947 -49563574 + MER5A DNA MER1_type 8 109 -80 2721 126 14 5 chr15 51817273 51817717 -49562804 + L1PB3 LINE L1 5707 6154 0 26 50 0 0 chr15 51817726 51817766 -49562755 + AT_rich Low_complexity Low_complexity 1 40 0 215 224 0 92 chr15 51818338 51818414 -49562107 + L2 LINE L2 3161 3229 -43 2223 104 0 7 chr15 51818724 51819032 -49561489 + AluSx SINE Alu 1 306 -6 1086 77 36 6 chr15 51819367 51819535 -49560986 - MER30 DNA MER1_type -57 173 1 2278 108 0 7 chr15 51819781 51820088 -49560433 + AluSx SINE Alu 2 306 -6 242 29 29 0 chr15 51820205 51820240 -49560281 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 269 182 15 15 chr15 51821201 51821267 -49559254 - MER116 DNA Mariner 0 80 15 224 305 143 9 chr15 51824024 51824129 -49556392 - L2 LINE L2 -4 3268 3150 315 0 0 0 chr15 51824618 51824653 -49555868 + (CA)n Simple_repeat Simple_repeat 2 36 0 1083 162 20 25 chr15 51824663 51824860 -49555661 + AluJb SINE Alu 108 303 -9 243 299 104 52 chr15 51825699 51825833 -49554688 - MER5A DNA MER1_type -48 141 1 562 244 50 44 chr15 51827456 51827636 -49552885 + L2 LINE L2 3118 3298 -15 307 226 53 83 chr15 51827779 51827912 -49552609 - L1ME LINE L1 -486 5618 5490 364 277 129 7 chr15 51827928 51828083 -49552438 - L1ME LINE L1 -2337 5454 5281 1883 113 42 42 chr15 51828562 51828915 -49551606 - THE1B LTR MaLR -11 353 1 877 295 60 64 chr15 51829557 51830364 -49550157 - L1ME LINE L1 -4862 1257 455 2347 91 0 7 chr15 51830382 51830691 -49549830 + AluSg1 SINE Alu 1 307 -2 397 259 71 94 chr15 51830763 51831060 -49549461 - L1ME LINE L1 -5825 294 5 2048 132 7 0 chr15 51831186 51831481 -49549040 - AluSx SINE Alu -15 297 1 998 230 72 122 chr15 51831649 51832175 -49548346 - L2 LINE L2 0 3313 2814 2118 70 92 0 chr15 51832352 51832625 -49547896 - AluSp SINE Alu -15 298 1 2428 52 3 26 chr15 51833230 51833539 -49546982 - AluY SINE Alu -9 302 1 600 130 0 46 chr15 51833744 51833852 -49546669 - L1PB4 LINE L1 -1 6155 6053 1934 131 25 0 chr15 51835751 51836034 -49544487 + AluSx SINE Alu 1 290 -22 1730 139 46 4 chr15 51836178 51836459 -49544062 - AluJb SINE Alu -19 293 1 658 299 55 10 chr15 51836516 51837123 -49543398 + L1ME LINE L1 5014 5655 -496 774 254 34 34 chr15 51837353 51837489 -49543032 + MER3 DNA MER1_type 1 139 -70 1752 148 95 0 chr15 51837489 51837773 -49542748 - AluSx SINE Alu -1 311 1 774 254 34 34 chr15 51837773 51837845 -49542676 + MER3 DNA MER1_type 138 209 0 225 256 151 0 chr15 51837896 51837982 -49542539 + L1M2 LINE L1 5700 5798 -502 1151 288 69 33 chr15 51838150 51838730 -49541791 - MLT1L LTR MaLR -14 601 1 2489 187 36 4 chr15 51838827 51839382 -49541139 - L1MA4 LINE L1 0 6300 5728 287 244 0 11 chr15 51839596 51839686 -49540835 + (TA)n Simple_repeat Simple_repeat 2 90 0 235 264 0 22 chr15 51839698 51839789 -49540732 + L1MC4 LINE L1 6615 6703 -1339 495 293 0 0 chr15 51839796 51839970 -49540551 + (TA)n Simple_repeat Simple_repeat 1 174 0 228 247 59 0 chr15 51839973 51840058 -49540463 + L1MC4 LINE L1 6614 6703 -1339 183 239 0 0 chr15 51840068 51840114 -49540407 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 5828 144 22 38 chr15 51840118 51841552 -49538969 - L1MA4 LINE L1 -653 5647 4240 242 304 0 0 chr15 51841588 51841644 -49538877 - MIR SINE MIR -142 120 65 180 0 0 0 chr15 51841844 51841864 -49538657 + (T)n Simple_repeat Simple_repeat 1 20 0 491 262 131 30 chr15 51841975 51842212 -49538309 - MIR SINE MIR 0 262 2 2348 67 7 3 chr15 51842418 51842715 -49537806 - AluY SINE Alu -13 298 1 3657 126 2 11 chr15 51843349 51843881 -49536640 + MER1A DNA MER1_type 1 527 0 2365 64 0 0 chr15 51844041 51844348 -49536173 + AluY SINE Alu 1 307 0 2666 14 0 0 chr15 51845257 51845552 -49534969 + AluY SINE Alu 1 295 -16 2221 79 55 0 chr15 51845566 51845858 -49534663 + AluSx SINE Alu 1 308 -4 663 229 122 5 chr15 51845866 51846071 -49534450 + MIR SINE MIR 31 259 -3 2006 124 13 7 chr15 51846138 51846436 -49534085 + AluSx SINE Alu 1 300 -12 25 31 0 0 chr15 51846514 51846546 -49533975 + AT_rich Low_complexity Low_complexity 1 32 0 2145 124 10 16 chr15 51847266 51847580 -49532941 + AluSx SINE Alu 1 312 0 23 0 0 0 chr15 51847807 51847830 -49532691 + AT_rich Low_complexity Low_complexity 1 23 0 589 217 171 0 chr15 51848842 51848994 -49531527 + MER5A DNA MER1_type 9 186 -3 290 24 48 0 chr15 51849613 51849655 -49530866 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2254 86 0 10 chr15 51849657 51849947 -49530574 - AluSq SINE Alu -26 287 1 1047 194 103 15 chr15 51850239 51850568 -49529953 + MLT2F LTR ERVL 302 659 -4 256 298 24 36 chr15 51850574 51850658 -49529863 - MER5B DNA MER1_type -73 105 23 225 0 0 0 chr15 51851428 51851453 -49529068 + (CTG)n Simple_repeat Simple_repeat 2 26 0 2177 120 0 22 chr15 51851664 51851980 -49528541 + AluSg SINE Alu 1 309 -1 183 156 0 0 chr15 51852726 51852758 -49527763 + (CA)n Simple_repeat Simple_repeat 1 32 0 211 351 14 0 chr15 51853475 51853549 -49526972 + L2 LINE L2 2878 2952 -320 851 209 45 6 chr15 51853684 51853859 -49526662 + MIR SINE MIR 17 198 -64 860 249 16 0 chr15 51853859 51854044 -49526477 + MER5A DNA MER1_type 1 188 -1 300 70 0 0 chr15 51854952 51854995 -49525526 + (TG)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr15 51855002 51855024 -49525497 + AT_rich Low_complexity Low_complexity 1 22 0 2078 94 19 16 chr15 51855030 51855337 -49525184 + AluSq SINE Alu 1 308 -5 204 310 35 53 chr15 51856038 51856151 -49524370 + MIR SINE MIR 79 189 -73 305 331 113 0 chr15 51856724 51856857 -49523664 + MIR SINE MIR 102 249 -13 1946 125 42 0 chr15 51857836 51858124 -49522397 + AluSp SINE Alu 1 300 -13 586 213 29 66 chr15 51858125 51858369 -49522152 + L1MC5 LINE L1 7701 7935 -26 21 82 0 0 chr15 51859104 51859153 -49521368 + AT_rich Low_complexity Low_complexity 1 49 0 2759 150 21 6 chr15 51859283 51859762 -49520759 - L1PA16 LINE L1 -30 6136 5651 4407 210 38 38 chr15 51859818 51861023 -49519498 + L1M4 LINE L1 16 1220 -5322 387 290 83 16 chr15 51861034 51861227 -49519294 + L1M4 LINE L1 1898 2103 -4543 2144 134 0 10 chr15 51861282 51861589 -49518932 + AluSx SINE Alu 1 304 -8 285 261 75 35 chr15 51861630 51861856 -49518665 + L1M4 LINE L1 2289 2523 -4123 * 1745 176 94 2 chr15 51861854 51862279 -49518242 + L1MB7 LINE L1 5718 6181 -3 21 0 0 0 chr15 51862678 51862699 -49517822 + AT_rich Low_complexity Low_complexity 1 21 0 2285 102 0 0 chr15 51863625 51863919 -49516602 + AluSp SINE Alu 18 311 -2 3153 62 0 62 chr15 51864144 51864614 -49515907 + L1PB1 LINE L1 5711 6151 0 1905 113 7 0 chr15 51865157 51865448 -49515073 - L1MA4A LINE L1 -7 6296 6004 417 275 129 34 chr15 51866847 51867048 -49513473 + MIR SINE MIR 38 256 -6 22 0 0 0 chr15 51867849 51867871 -49512650 + AT_rich Low_complexity Low_complexity 1 22 0 380 322 153 0 chr15 51869063 51869181 -49511340 + MIR SINE MIR 11 146 -116 298 165 58 126 chr15 51869188 51869291 -49511230 + HsTC2 DNA Tc2 4 99 -1799 376 295 25 8 chr15 51869383 51869505 -49511016 + MIR SINE MIR 139 262 0 22 0 0 0 chr15 51869603 51869625 -49510896 + AT_rich Low_complexity Low_complexity 1 22 0 1255 234 26 4 chr15 51869950 51870039 -49510482 + AluJo SINE Alu 20 106 -206 507 60 0 0 chr15 51870039 51870106 -49510415 + (TA)n Simple_repeat Simple_repeat 2 68 0 1255 234 26 4 chr15 51870106 51870281 -49510240 + AluJo SINE Alu 106 290 -22 22 0 0 0 chr15 51870281 51870303 -49510218 + AT_rich Low_complexity Low_complexity 1 22 0 230 53 184 0 chr15 51870303 51870341 -49510180 + L1PA11 LINE L1 6128 6172 -2 22 0 0 0 chr15 51870617 51870639 -49509882 + AT_rich Low_complexity Low_complexity 1 22 0 591 314 54 0 chr15 51870825 51871029 -49509492 + MIR SINE MIR 46 260 -2 413 309 81 0 chr15 51871240 51871389 -49509132 - MIR3 SINE MIR -17 191 31 1781 112 109 4 chr15 51871854 51872121 -49508400 + AluSx SINE Alu 1 295 -17 288 225 70 42 chr15 51872176 51872247 -49508274 - L2 LINE L2 -1 3312 3240 1971 116 0 52 chr15 51872500 51872833 -49507688 + AluSx SINE Alu 1 312 0 730 173 0 81 chr15 51872862 51873035 -49507486 - AluJo SINE Alu -90 222 64 1346 135 160 8 chr15 51874309 51874553 -49505968 + AluSx SINE Alu 1 281 -31 262 105 18 18 chr15 51874556 51874613 -49505908 + (TA)n Simple_repeat Simple_repeat 1 57 0 1063 113 25 0 chr15 51876419 51876578 -49503943 - AluY SINE Alu -12 299 137 1661 184 0 20 chr15 51877765 51878059 -49502462 - AluJb SINE Alu -22 290 3 2061 131 0 16 chr15 51878428 51878742 -49501779 - AluSx SINE Alu -1 311 3 694 111 0 9 chr15 51880694 51880802 -49499719 + L1PB3 LINE L1 6004 6110 -44 2038 129 11 3 chr15 51880802 51881089 -49499432 + AluSx SINE Alu 1 289 -23 2339 93 3 0 chr15 51881333 51881635 -49498886 + AluSg SINE Alu 1 303 -7 2260 106 3 0 chr15 51881646 51881947 -49498574 + AluSx SINE Alu 1 302 -10 38 39 0 0 chr15 51882948 51883000 -49497521 + AT_rich Low_complexity Low_complexity 1 52 0 187 300 55 55 chr15 51884135 51884245 -49496276 - L2 LINE L2 -3 3310 3201 242 292 154 31 chr15 51884395 51884525 -49495996 + MIR SINE MIR 65 210 -52 1520 224 3 0 chr15 51884616 51884911 -49495610 + AluJo SINE Alu 2 297 -15 355 239 123 23 chr15 51885216 51885346 -49495175 + MIR3 SINE MIR 66 208 0 1915 131 0 0 chr15 51886193 51886461 -49494060 + AluSq SINE Alu 1 268 -45 652 96 0 11 chr15 51886461 51886555 -49493966 + AluSg/x SINE Alu 193 285 -25 530 225 44 33 chr15 51887155 51887337 -49493184 + AluY SINE Alu 119 302 -9 1735 184 7 3 chr15 51887940 51888222 -49492299 + AluJo SINE Alu 1 283 -29 33 90 0 0 chr15 51888506 51888595 -49491926 + AT_rich Low_complexity Low_complexity 1 89 0 621 194 30 37 chr15 51888871 51889005 -49491516 + FLAM_A SINE Alu 1 133 0 1822 146 3 7 chr15 51889265 51889552 -49490969 - AluSx SINE Alu -26 286 1 500 222 131 50 chr15 51890603 51890801 -49489720 - Charlie8 DNA MER1_type -2143 274 61 811 203 69 43 chr15 51890835 51891067 -49489454 + MIR SINE MIR 14 251 -11 22 35 0 0 chr15 51891203 51891232 -49489289 + AT_rich Low_complexity Low_complexity 1 29 0 1342 148 108 68 chr15 51891687 51892011 -49488510 - MER44D DNA MER2_type -1 608 2 467 136 262 0 chr15 51892323 51892426 -49488095 + FLAM_A SINE Alu 1 130 -12 237 65 0 0 chr15 51892844 51892875 -49487646 + (T)n Simple_repeat Simple_repeat 1 31 0 187 547 0 0 chr15 51892896 51892949 -49487572 + G-rich Low_complexity Low_complexity 1 53 0 344 266 21 11 chr15 51894067 51894161 -49486360 - MIR SINE MIR -94 114 20 887 151 0 0 chr15 51894199 51894325 -49486196 + FLAM_C SINE Alu 1 126 -17 1318 160 53 63 chr15 51894351 51894669 -49485852 + MER33 DNA MER1_type 1 315 -9 1878 116 56 0 chr15 51894751 51895019 -49485502 - AluSg SINE Alu -17 293 11 511 311 149 0 chr15 51895398 51895633 -49484888 - L3 LINE CR1 -420 1157 888 2165 116 7 0 chr15 51895904 51896214 -49484307 + AluSx SINE Alu 1 312 0 2077 114 0 7 chr15 51896493 51896774 -49483747 + AluSc SINE Alu 1 279 -30 2208 98 3 31 chr15 51896774 51897091 -49483430 + AluSx SINE Alu 2 309 -3 205 121 0 69 chr15 51897099 51897157 -49483364 + (TTATA)n Simple_repeat Simple_repeat 4 57 0 692 224 109 11 chr15 51897188 51897371 -49483150 + MIR SINE MIR 34 234 -28 1949 69 120 4 chr15 51897443 51897718 -49482803 + AluY SINE Alu 1 307 -4 484 147 0 0 chr15 51897766 51897834 -49482687 + AluJ/FLAM SINE Alu 2 69 -243 518 208 195 32 chr15 51897836 51897990 -49482531 + AluJo/FRAM SINE Alu 130 308 -4 204 211 19 19 chr15 51897990 51898042 -49482479 + (TA)n Simple_repeat Simple_repeat 1 52 0 281 149 35 11 chr15 51898064 51898151 -49482370 + (TA)n Simple_repeat Simple_repeat 2 90 0 250 86 0 0 chr15 51898951 51898986 -49481535 + MADE1 DNA Mariner 1 35 -45 23 0 0 0 chr15 51899312 51899335 -49481186 + AT_rich Low_complexity Low_complexity 1 23 0 1997 102 57 21 chr15 51899544 51899827 -49480694 + AluSg SINE Alu 1 293 -17 356 653 0 0 chr15 51900854 51900998 -49479523 + G-rich Low_complexity Low_complexity 1 144 0 2306 103 0 0 chr15 51901431 51901732 -49478789 + AluSg SINE Alu 1 301 -9 2664 57 3 20 chr15 51902436 51902787 -49477734 - L1PA8 LINE L1 -1 6171 5827 2038 121 10 23 chr15 51902787 51903092 -49477429 - AluSc SINE Alu -8 301 1 9340 75 19 1 chr15 51903092 51904703 -49475818 - L1P3 LINE L1 -482 5690 4052 2070 130 0 0 chr15 51904861 51905025 -49475496 - AluSx SINE Alu -11 301 138 414 0 0 0 chr15 51905025 51905071 -49475450 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1923 102 0 0 chr15 51905071 51905317 -49475204 - AluY SINE Alu -30 281 36 2070 130 0 0 chr15 51905317 51905451 -49475070 - AluSx SINE Alu -172 140 2 1117 226 62 31 chr15 51905617 51905909 -49474612 - AluJo SINE Alu 0 302 2 23 0 0 0 chr15 51905938 51905961 -49474560 + AT_rich Low_complexity Low_complexity 1 23 0 401 290 100 35 chr15 51906004 51906204 -49474317 - MLT1I LTR MaLR -114 295 83 1397 199 8 0 chr15 51906415 51906666 -49473855 + L1MB7 LINE L1 5423 5675 -509 3965 50 50 0 chr15 51906667 51907167 -49473354 + LTR17 LTR ERV1 256 780 0 259 191 0 0 chr15 51907167 51907209 -49473312 + HERV17 LTR ERV1 2 43 -8583 * 57059 43 5 1 chr15 51907197 51913834 -49466687 + HERV17 LTR ERV1 1953 8621 -5 2723 58 0 0 chr15 51913836 51914162 -49466359 + LTR17 LTR ERV1 1 326 -454 1694 183 56 3 chr15 51914205 51914561 -49465960 + L1MB7 LINE L1 5665 6039 -145 8447 25 7 228 chr15 51914562 51916114 -49464407 - SVA Other Other -1 1385 177 1503 124 10 0 chr15 51916153 51916362 -49464159 - AluSg/x SINE Alu -14 298 88 2065 134 7 3 chr15 51916402 51916700 -49463821 + AluSx SINE Alu 3 301 -11 851 137 22 0 chr15 51916702 51916841 -49463680 + L1MB7 LINE L1 6035 6176 -8 457 95 68 0 chr15 51916856 51916930 -49463591 + L1MB7 LINE L1 6105 6183 -1 819 142 17 0 chr15 51917045 51917165 -49463356 + AluSg/x SINE Alu 91 212 -100 810 314 37 37 chr15 51917188 51917592 -49462929 - ERVL LTR ERVL -3652 2112 1709 2289 105 3 0 chr15 51917654 51917948 -49462573 - AluSp SINE Alu -18 295 1 1164 216 63 92 chr15 51918093 51918226 -49462295 - L1MC4 LINE L1 -136 7906 7771 2537 78 0 0 chr15 51918226 51918533 -49461988 + AluY SINE Alu 1 307 -4 1164 216 63 92 chr15 51918533 51918734 -49461787 - L1MC4 LINE L1 -271 7771 7566 2234 110 3 0 chr15 51918734 51919034 -49461487 - AluSx SINE Alu -11 301 1 8732 61 3 4 chr15 51919035 51920107 -49460414 + MER11C LTR ERVK 1 1071 0 1164 216 63 92 chr15 51920107 51920122 -49460399 - L1MC4 LINE L1 -476 7566 7552 2361 92 0 10 chr15 51920122 51920425 -49460096 - AluY SINE Alu -11 300 1 1164 216 63 92 chr15 51920425 51920547 -49459974 - L1MC4 LINE L1 -490 7552 7445 261 179 107 0 chr15 51920544 51920600 -49459921 - L1MC4 LINE L1 -972 7070 7009 * 345 132 19 0 chr15 51920600 51920653 -49459868 - MER45C DNA AcHobo 0 953 900 * 499 348 54 5 chr15 51920648 51920872 -49459649 - MER45C DNA AcHobo -325 628 394 24 32 0 0 chr15 51921352 51921383 -49459138 + AT_rich Low_complexity Low_complexity 1 31 0 345 186 29 0 chr15 51921719 51921789 -49458732 - L1MC4a LINE L1 -930 6878 6807 2067 111 29 26 chr15 51921814 51922121 -49458400 - AluSg SINE Alu -2 308 1 2199 112 3 0 chr15 51922152 51922446 -49458075 + AluSg SINE Alu 1 295 -15 4185 182 63 55 chr15 51922469 51923732 -49456789 - L1MB5 LINE L1 -6 6168 4917 1986 162 0 0 chr15 51923732 51924040 -49456481 - AluJb SINE Alu -4 308 1 4185 182 63 55 chr15 51924040 51924422 -49456099 - L1MB5 LINE L1 -1257 4917 4497 2227 96 20 3 chr15 51924422 51924724 -49455797 - AluSq SINE Alu -6 307 1 4185 182 63 55 chr15 51924724 51925011 -49455510 - L1MB5 LINE L1 -1677 4497 4214 746 186 0 101 chr15 51925011 51925199 -49455322 - L1MC4a LINE L1 -1077 6731 6563 500 333 122 28 chr15 51925364 51925940 -49454581 + L2 LINE L2 2012 2641 -673 810 285 0 0 chr15 51925974 51926188 -49454333 + MIR SINE MIR 48 261 -1 2448 77 0 3 chr15 51926819 51927131 -49453390 - AluY SINE Alu 0 311 1 24 32 0 0 chr15 51928425 51928456 -49452065 + GC_rich Low_complexity Low_complexity 1 31 0 233 197 16 0 chr15 51929708 51929769 -49450752 + CT-rich Low_complexity Low_complexity 3 64 0 2481 178 22 31 chr15 51929790 51929821 -49450700 - L1M4 LINE L1 -984 5162 5132 2054 156 0 0 chr15 51929821 51930123 -49450398 - AluSx SINE Alu -10 302 1 2481 178 22 31 chr15 51930123 51930599 -49449922 - L1M4 LINE L1 -1014 5132 4658 2237 114 3 0 chr15 51930599 51930896 -49449625 - AluSp SINE Alu -15 298 1 2481 178 22 31 chr15 51930896 51930933 -49449588 - L1M4 LINE L1 -1488 4658 4622 1533 230 224 23 chr15 51930994 51931142 -49449379 + L2 LINE L2 2357 2474 -839 2390 85 3 0 chr15 51931142 51931447 -49449074 + AluSx SINE Alu 1 306 -6 1533 230 224 23 chr15 51931447 51932122 -49448399 + L2 LINE L2 2474 3312 -1 668 112 0 0 chr15 51932164 51932253 -49448268 - 5S rRNA rRNA -31 90 2 302 136 0 0 chr15 51932583 51932627 -49447894 - AluSq/x SINE Alu -172 131 88 637 200 118 6 chr15 51933169 51933339 -49447182 + MER53 DNA DNA 1 189 0 412 325 25 0 chr15 51933448 51933605 -49446916 - MIR3 SINE MIR 0 208 48 21 36 0 0 chr15 51934154 51934182 -49446339 + AT_rich Low_complexity Low_complexity 1 28 0 1114 153 40 54 chr15 51935042 51935264 -49445257 + MER20 DNA MER1_type 1 219 0 192 77 0 0 chr15 51935422 51935448 -49445073 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 309 303 170 12 chr15 51935943 51936108 -49444413 - MIR3 SINE MIR -3 205 15 190 304 82 64 chr15 51936460 51936631 -49443890 + L2 LINE L2 2698 2871 -443 280 74 0 56 chr15 51936631 51936685 -49443836 + (TTCCC)n Simple_repeat Simple_repeat 3 53 0 1578 153 0 4 chr15 51936703 51936931 -49443590 - AluSx SINE Alu -80 232 6 4894 52 2 0 chr15 51937248 51937838 -49442683 + L1PA6 LINE L1 5545 6135 -19 216 0 0 0 chr15 51937838 51937862 -49442659 + (TA)n Simple_repeat Simple_repeat 1 24 0 204 316 0 51 chr15 51937897 51938014 -49442507 - MER5B DNA MER1_type -67 111 1 237 277 84 0 chr15 51938038 51938121 -49442400 - MIR SINE MIR -76 132 43 889 148 59 0 chr15 51938288 51938457 -49442064 + MER5A DNA MER1_type 11 189 0 466 208 69 21 chr15 51938658 51938802 -49441719 - MIR SINE MIR -11 251 101 467 270 29 40 chr15 51938871 51939045 -49441476 - MER5A DNA MER1_type 0 189 18 208 193 18 70 chr15 51939505 51939562 -49440959 + MER5A DNA MER1_type 48 101 -88 2578 63 0 0 chr15 51939584 51939883 -49440638 + AluY SINE Alu 1 299 -12 303 28 0 0 chr15 51940256 51940292 -49440229 + (TA)n Simple_repeat Simple_repeat 1 36 0 450 214 56 0 chr15 51940302 51940428 -49440093 + L1MA10 LINE L1 3229 3361 -2785 2211 128 0 3 chr15 51940430 51940743 -49439778 + AluSx SINE Alu 1 312 0 3485 142 22 69 chr15 51940745 51940806 -49439715 + L1MA10 LINE L1 5141 5203 -1109 1934 159 7 0 chr15 51940806 51941108 -49439413 + AluSx SINE Alu 1 304 -8 3485 142 22 69 chr15 51941108 51941887 -49438634 + L1MA10 LINE L1 5203 5950 -362 918 192 6 0 chr15 51941888 51942044 -49438477 + FRAM SINE Alu 2 158 -18 1696 181 7 52 chr15 51942066 51942469 -49438052 + L1MA10 LINE L1 5943 6327 -7 379 325 76 12 chr15 51942546 51942795 -49437726 + HAL1 LINE L1 2194 2458 -49 618 130 0 0 chr15 51942823 51942915 -49437606 + AluS SINE Alu 1 92 -220 239 250 60 36 chr15 51943286 51943370 -49437151 - MER81 DNA DNA -6 108 23 330 279 81 0 chr15 51943370 51943481 -49437040 + MIR SINE MIR 99 218 -44 36 0 0 0 chr15 51943982 51944018 -49436503 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr15 51944333 51944366 -49436155 + AT_rich Low_complexity Low_complexity 1 33 0 1958 137 3 31 chr15 51944601 51944922 -49435599 + AluSx SINE Alu 1 312 0 374 254 62 23 chr15 51945896 51946073 -49434448 + L1M4 LINE L1 3865 4048 -2098 426 247 10 10 chr15 51946100 51946197 -49434324 + AluJ/FLAM SINE Alu 1 97 -215 1572 178 35 0 chr15 51946362 51946621 -49433900 - AluSx SINE Alu -44 268 1 398 264 156 32 chr15 51946644 51946809 -49433712 - L1M4 LINE L1 -867 5279 5136 1459 171 56 28 chr15 51946809 51947095 -49433426 - AluJo SINE Alu -18 294 1 398 264 156 32 chr15 51947095 51947400 -49433121 - L1M4 LINE L1 -1010 5136 4739 304 266 28 0 chr15 51947515 51947624 -49432897 - L1M4 LINE L1 -1548 4598 4487 5651 118 30 24 chr15 51947647 51948617 -49431904 + L1MC1 LINE L1 5345 6320 -13 2021 132 10 13 chr15 51948621 51948932 -49431589 + AluSg SINE Alu 1 310 0 2192 117 7 0 chr15 51949130 51949437 -49431084 + AluSp SINE Alu 1 309 -4 1715 199 31 6 chr15 51950211 51950567 -49429954 + MLT1A1 LTR MaLR 1 365 0 252 335 145 20 chr15 51950570 51950770 -49429751 - L2 LINE L2 -707 2607 2383 682 228 176 5 chr15 51950792 51950985 -49429536 - MIR SINE MIR -36 226 1 198 309 115 30 chr15 51951013 51951178 -49429343 - L2 LINE L2 -984 2330 2152 407 226 29 10 chr15 51952537 51952639 -49427882 + MIR3 SINE MIR 96 199 -9 1901 144 9 103 chr15 51952966 51953395 -49427126 + MLT1B LTR MaLR 2 390 0 322 306 33 8 chr15 51953450 51953571 -49426950 - L1MC4 LINE L1 -185 7857 7734 2026 111 21 0 chr15 51953634 51953913 -49426608 + AluSx SINE Alu 1 285 -27 216 0 0 0 chr15 51953918 51953942 -49426579 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 435 327 164 21 chr15 51954924 51955392 -49425129 + L2 LINE L2 2253 2787 -527 922 189 44 0 chr15 51955475 51955655 -49424866 + MER5A DNA MER1_type 2 189 0 291 287 98 98 chr15 51956280 51956357 -49424164 - MER5A DNA MER1_type -6 183 107 1925 55 0 4 chr15 51956357 51956594 -49423927 + AluY SINE Alu 72 307 -4 291 287 98 98 chr15 51956594 51956690 -49423831 - MER5A DNA MER1_type -81 108 10 982 238 64 39 chr15 51956793 51957154 -49423367 + HAL1 LINE L1 1 370 -2137 3656 223 30 47 chr15 51957165 51957294 -49423227 + L1M1 LINE L1 3466 3596 -3969 2392 96 0 6 chr15 51957294 51957608 -49422913 + AluSx SINE Alu 1 312 0 3656 223 30 47 chr15 51957608 51958665 -49421856 + L1M1 LINE L1 3596 4656 -2909 1650 115 0 0 chr15 51958665 51958882 -49421639 + AluSq SINE Alu 1 217 -96 396 284 37 0 chr15 51959035 51959169 -49421352 - LTR33 LTR ERVL -373 148 10 292 365 38 13 chr15 51959372 51959531 -49420990 - L2 LINE L2 -531 2783 2621 2136 116 10 0 chr15 51960174 51960466 -49420055 + AluSq SINE Alu 1 295 -18 666 184 16 0 chr15 51960466 51960586 -49419935 - AluJo/FLAM SINE Alu -190 122 1 271 272 0 25 chr15 51960604 51960685 -49419836 + Charlie8 DNA MER1_type 125 203 -2214 2306 90 10 0 chr15 51960715 51961015 -49419506 - AluSg SINE Alu -7 303 1 2320 113 0 7 chr15 51961106 51961415 -49419106 - AluSq SINE Alu -6 307 1 223 270 14 14 chr15 51961978 51962052 -49418469 - MIR SINE MIR -111 151 78 1008 97 0 8 chr15 51962056 51962190 -49418331 + AluSq/x SINE Alu 1 133 -180 1984 121 7 4 chr15 51962193 51962501 -49418020 + AluSx SINE Alu 1 309 0 207 363 71 18 chr15 51963068 51963236 -49417285 - MIR SINE MIR -52 210 34 2005 150 3 52 chr15 51963350 51963469 -49417052 + MER7A DNA MER2_type 1 124 -2914 2116 120 3 0 chr15 51963469 51963761 -49416760 - AluSx SINE Alu -19 293 1 2005 150 3 52 chr15 51963761 51964007 -49416514 + MER7A DNA MER2_type 124 346 0 1562 261 94 24 chr15 51964129 51964639 -49415882 - L2 LINE L2 0 3313 2782 284 298 219 0 chr15 51964679 51964793 -49415728 - L2 LINE L2 0 3272 3134 1745 113 153 43 chr15 51964800 51964866 -49415655 - MER47A DNA MER2_type -1957 366 309 1481 169 83 24 chr15 51964866 51965156 -49415365 + AluJo SINE Alu 1 307 -5 1745 113 153 43 chr15 51965156 51965416 -49415105 - MER47A DNA MER2_type -2014 309 4 2089 136 0 7 chr15 51965448 51965742 -49414779 + AluSx SINE Alu 1 292 -20 1823 233 105 65 chr15 51965743 51966066 -49414455 + L1ME3A LINE L1 5254 5563 -607 1758 144 68 37 chr15 51966066 51966392 -49414129 + MER1B DNA MER1_type 1 336 -1 1823 233 105 65 chr15 51966392 51966928 -49413593 + L1ME3A LINE L1 5563 6147 -23 1424 216 70 99 chr15 51966928 51967106 -49413415 + MLT1F LTR MaLR 1 183 -359 1889 170 3 7 chr15 51967106 51967406 -49413115 + AluJo SINE Alu 1 299 -13 1424 216 70 99 chr15 51967406 51967773 -49412748 + MLT1F LTR MaLR 183 530 -12 24 32 0 0 chr15 51967786 51967817 -49412704 + AT_rich Low_complexity Low_complexity 1 31 0 2047 68 29 42 chr15 51968457 51968767 -49411754 + L1PB2 LINE L1 5844 6149 -2 2621 49 0 0 chr15 51968917 51969222 -49411299 + AluY SINE Alu 1 305 -6 1735 184 7 3 chr15 51969825 51970107 -49410414 + AluJo SINE Alu 1 283 -29 33 90 0 0 chr15 51970391 51970480 -49410041 + AT_rich Low_complexity Low_complexity 1 89 0 621 194 30 37 chr15 51970756 51970890 -49409631 + FLAM_A SINE Alu 1 133 0 2243 80 0 7 chr15 51971150 51971438 -49409083 - AluSx SINE Alu -26 286 1 1346 246 94 12 chr15 51972851 51973278 -49407243 - MLT1H LTR MaLR -4 545 84 233 296 70 0 chr15 51973399 51973470 -49407051 + MIR SINE MIR 76 151 -111 2152 110 20 0 chr15 51973636 51973935 -49406586 - AluSx SINE Alu -7 305 1 471 238 110 26 chr15 51973949 51974176 -49406345 - HAL1 LINE L1 -5 2502 2257 2105 119 0 7 chr15 51974225 51974520 -49406001 + AluSx SINE Alu 1 293 -19 24 0 0 0 chr15 51975109 51975133 -49405388 + AT_rich Low_complexity Low_complexity 1 24 0 2035 92 28 7 chr15 51975901 51976184 -49404337 + AluSx SINE Alu 1 289 -23 2157 102 7 0 chr15 51976729 51977024 -49403497 - AluSc SINE Alu -12 297 1 1971 127 96 35 chr15 51977137 51977532 -49402989 + MSTB1 LTR MaLR 1 419 -13 562 72 24 24 chr15 51977689 51977772 -49402749 - AluSx SINE Alu -16 294 212 1137 87 7 7 chr15 51977773 51977922 -49402599 - AluSx SINE Alu -164 149 1 1391 173 48 0 chr15 51977925 51978173 -49402348 - AluJo SINE Alu -7 305 46 186 138 0 0 chr15 51979065 51979094 -49401427 - L2 LINE L2 -18 3295 3267 2466 69 3 0 chr15 51979842 51980146 -49400375 - AluY SINE Alu -6 305 1 2491 66 0 3 chr15 51980329 51980633 -49399888 + AluY SINE Alu 1 303 -8 2376 83 3 3 chr15 51980688 51980988 -49399533 - AluSp SINE Alu -13 300 1 289 206 0 44 chr15 51981001 51981069 -49399452 + MIR3 SINE MIR 105 169 -39 1445 146 123 19 chr15 51981244 51981512 -49399009 + AluSg SINE Alu 1 296 -14 2152 125 0 7 chr15 51982347 51982644 -49397877 - AluSx SINE Alu -17 295 1 2182 78 24 17 chr15 51982769 51983062 -49397459 + AluSq SINE Alu 1 295 -18 210 279 153 42 chr15 51985848 51986038 -49394483 + L2 LINE L2 2276 2486 -828 2074 162 66 75 chr15 51986192 51986309 -49394212 + Tigger7 DNA MER2_type 1 118 -2369 2046 140 3 7 chr15 51986309 51986609 -49393912 + AluSx SINE Alu 1 299 -13 2074 162 66 75 chr15 51986609 51987022 -49393499 + Tigger7 DNA MER2_type 118 526 -1961 552 163 0 0 chr15 51987016 51987108 -49393413 + Tigger7 DNA MER2_type 2400 2491 0 * 989 162 39 0 chr15 51989912 51990066 -49390455 - AluSg/x SINE Alu -17 293 134 2465 82 0 0 chr15 51990165 51990470 -49390051 + AluSc SINE Alu 1 305 -4 1787 168 10 13 chr15 51991499 51991803 -49388718 + AluJo SINE Alu 1 303 -9 2273 109 0 3 chr15 51991805 51992118 -49388403 + AluSx SINE Alu 1 312 0 562 156 0 0 chr15 51992295 51992385 -49388136 + 5S rRNA rRNA 1 90 -31 1803 165 7 0 chr15 51992539 51992812 -49387709 - AluSx SINE Alu -2 310 36 207 0 0 0 chr15 51993304 51993327 -49387194 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2007 139 13 7 chr15 51993336 51993645 -49386876 + AluSx SINE Alu 1 311 -1 339 314 145 0 chr15 51993645 51993804 -49386717 + MIR SINE MIR 61 242 -20 24 96 0 0 chr15 51994054 51994127 -49386394 + AT_rich Low_complexity Low_complexity 1 73 0 1729 149 66 0 chr15 51994154 51994443 -49386078 - AluSx SINE Alu -4 308 1 1002 100 8 0 chr15 51994540 51994670 -49385851 + AluSq/x SINE Alu 1 131 -182 2311 82 3 3 chr15 51995219 51995512 -49385009 + AluSp SINE Alu 1 293 -20 301 105 0 0 chr15 51996771 51996809 -49383712 + Tigger2 DNA MER2_type 1 38 -2680 * 659 245 43 0 chr15 51996808 51996947 -49383574 - MER8 DNA MER2_type -93 146 2 180 342 112 6 chr15 51996987 51997148 -49383373 + L2 LINE L2 2864 3041 -231 2155 122 0 0 chr15 51997559 51997855 -49382666 + AluSx SINE Alu 1 296 -16 2416 72 7 0 chr15 51997984 51998277 -49382244 + AluSp SINE Alu 2 296 -17 21 0 0 0 chr15 51998842 51998863 -49381658 + AT_rich Low_complexity Low_complexity 1 21 0 606 143 0 0 chr15 51999238 51999322 -49381199 + AluSx SINE Alu 2 85 -227 2388 75 3 7 chr15 51999323 51999629 -49380892 + AluSg SINE Alu 1 305 -5 1535 121 0 9 chr15 51999627 51999850 -49380671 + AluSx SINE Alu 71 291 -19 * 304 262 173 24 chr15 52000318 52000486 -49380035 - MIR SINE MIR -64 198 6 2240 102 7 0 chr15 52001105 52001398 -49379123 + AluSx SINE Alu 1 295 -17 1455 142 24 109 chr15 52003361 52003691 -49376830 - AluYb8 SINE Alu -16 302 1 282 56 0 0 chr15 52003958 52003994 -49376527 - Alu SINE Alu -262 37 2 24 0 0 0 chr15 52004166 52004190 -49376331 + AT_rich Low_complexity Low_complexity 1 24 0 1839 156 17 23 chr15 52004415 52004716 -49375805 - AluJb SINE Alu -13 299 1 295 279 0 0 chr15 52005189 52005257 -49375264 + L2 LINE L2 3240 3307 -6 1268 266 11 43 chr15 52006287 52006655 -49373866 + MLT1A1 LTR MaLR 10 365 0 2123 121 24 0 chr15 52007337 52007627 -49372894 - AluSx SINE Alu -15 297 1 324 120 0 0 chr15 52007874 52007924 -49372597 + (TG)n Simple_repeat Simple_repeat 2 51 0 1711 173 3 20 chr15 52007970 52008265 -49372256 + AluJo SINE Alu 1 290 -22 738 180 16 0 chr15 52008282 52008404 -49372117 + FLAM_C SINE Alu 3 126 -17 2319 105 0 3 chr15 52008547 52008851 -49371670 + AluSq SINE Alu 1 303 -10 25 65 0 0 chr15 52008855 52008901 -49371620 + AT_rich Low_complexity Low_complexity 1 46 0 276 250 120 0 chr15 52008906 52009014 -49371507 + L1ME4a LINE L1 5982 6102 -19 2259 64 0 0 chr15 52009014 52009325 -49371196 - AluY SINE Alu 0 311 1 909 123 0 0 chr15 52009463 52009585 -49370936 + AluSg SINE Alu 1 122 -188 2376 68 3 0 chr15 52009586 52009880 -49370641 + AluY SINE Alu 1 295 -16 1871 104 39 46 chr15 52009883 52010190 -49370331 + AluSg SINE Alu 1 305 -5 237 258 67 34 chr15 52010202 52010291 -49370230 + Charlie4 DNA MER1_type 1869 1960 -1 16196 119 25 20 chr15 52010598 52011256 -49369265 - Tigger1 DNA MER2_type 0 2418 1765 2562 63 0 0 chr15 52011256 52011556 -49368965 - AluY SINE Alu -11 300 1 16196 119 25 20 chr15 52011556 52013125 -49367396 - Tigger1 DNA MER2_type -653 1765 176 1904 136 16 19 chr15 52013125 52013433 -49367088 + AluSq SINE Alu 1 307 -6 16196 119 25 20 chr15 52013433 52013610 -49366911 - Tigger1 DNA MER2_type -2242 176 1 2209 125 0 3 chr15 52013910 52014214 -49366307 - AluSx SINE Alu -9 303 1 196 259 56 19 chr15 52014787 52014841 -49365680 - L2 LINE L2 -16 3256 3201 515 92 0 0 chr15 52014856 52014921 -49365600 + Alu SINE Alu 2 66 -244 2361 65 3 13 chr15 52015361 52015669 -49364852 + AluY SINE Alu 1 305 -6 2252 68 16 16 chr15 52016287 52016594 -49363927 - AluSp SINE Alu -6 307 1 2258 79 3 44 chr15 52016619 52016934 -49363587 + AluSp SINE Alu 1 302 -11 439 232 66 114 chr15 52017231 52017371 -49363150 + MIR SINE MIR 52 197 -65 923 184 82 6 chr15 52017371 52017529 -49362992 + FAM SINE Alu 4 173 -2 2130 133 3 3 chr15 52017538 52017846 -49362675 + AluSg SINE Alu 1 308 -2 439 232 66 114 chr15 52017846 52017906 -49362615 + MIR SINE MIR 205 252 -10 2271 71 3 0 chr15 52018688 52018970 -49361551 - AluSg SINE Alu -26 284 2 504 82 0 118 chr15 52019371 52019456 -49361065 - AluSq/x SINE Alu -180 133 59 653 208 142 96 chr15 52019564 52019869 -49360652 + LTR37B LTR ERV1 12 344 -124 1528 171 27 27 chr15 52019869 52020168 -49360353 - AluJb SINE Alu -13 299 1 653 208 142 96 chr15 52020168 52020299 -49360222 + LTR37B LTR ERV1 344 468 0 941 196 0 22 chr15 52020461 52020640 -49359881 + FAM SINE Alu 1 175 0 617 170 14 109 chr15 52020650 52020797 -49359724 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr15 52020899 52020923 -49359598 + AT_rich Low_complexity Low_complexity 1 24 0 2146 104 0 26 chr15 52020963 52021270 -49359251 - AluSc SINE Alu -10 299 1 1820 157 14 7 chr15 52021274 52021555 -49358966 - AluJb SINE Alu -15 297 15 2129 109 7 3 chr15 52021575 52021869 -49358652 + AluSq SINE Alu 1 295 -18 1688 155 21 28 chr15 52021908 52022199 -49358322 + AluJo SINE Alu 1 289 -23 1445 193 33 17 chr15 52022376 52022458 -49358063 - AluJo SINE Alu -6 306 227 2885 77 41 0 chr15 52022458 52022820 -49357701 + MER51B LTR ERV1 1 377 0 1445 193 33 17 chr15 52022820 52023038 -49357483 - AluJo SINE Alu -85 227 1 3543 99 22 38 chr15 52023400 52023905 -49356616 + LOR1a LTR ERV1 1 497 0 2287 109 0 0 chr15 52024626 52024928 -49355593 + AluSg SINE Alu 1 302 -8 381 113 0 0 chr15 52025375 52025428 -49355093 - MER4E LTR ERV1 0 779 727 1492 263 120 63 chr15 52025436 52025675 -49354846 - L2 LINE L2 -221 3092 2868 2327 54 9 41 chr15 52025675 52025991 -49354530 + AluY SINE Alu 1 306 -5 1492 263 120 63 chr15 52025991 52026447 -49354074 - L2 LINE L2 -445 2868 2350 2159 119 10 10 chr15 52026447 52026757 -49353764 + AluSx SINE Alu 1 310 -2 1492 263 120 63 chr15 52026757 52026868 -49353653 - L2 LINE L2 -963 2350 2247 2377 83 0 0 chr15 52027341 52027631 -49352890 - AluSc SINE Alu -18 291 2 567 256 158 55 chr15 52027720 52027974 -49352547 - L2 LINE L2 0 3313 3034 1365 118 0 94 chr15 52028094 52028339 -49352182 + AluSx SINE Alu 59 280 -32 877 152 0 7 chr15 52028564 52028702 -49351819 + AluSq/x SINE Alu 1 137 -176 1561 112 130 32 chr15 52028704 52028981 -49351540 + AluSq SINE Alu 5 308 -5 2064 119 3 7 chr15 52028981 52029276 -49351245 + AluSg SINE Alu 1 294 -16 518 282 125 33 chr15 52029346 52029633 -49350888 - L1MC/D LINE L1 -615 5547 5269 388 260 97 25 chr15 52029756 52030074 -49350447 - L1MC/D LINE L1 -1038 5108 4751 2267 101 3 3 chr15 52030138 52030434 -49350087 + AluSx SINE Alu 2 297 -15 1909 145 0 17 chr15 52030985 52031282 -49349239 - AluJb SINE Alu -20 292 1 731 158 16 31 chr15 52033404 52033531 -49346990 + FLAM_C SINE Alu 1 125 -8 1201 123 6 0 chr15 52033543 52033714 -49346807 + AluY SINE Alu 1 172 -139 1258 125 44 138 chr15 52033716 52033832 -49346689 + AluSx SINE Alu 21 146 -166 2094 113 3 7 chr15 52033832 52034125 -49346396 + AluSp SINE Alu 1 292 -21 1258 125 44 138 chr15 52034125 52034305 -49346216 + AluSx SINE Alu 146 289 -23 746 223 61 0 chr15 52034318 52034466 -49346055 + FRAM SINE Alu 2 158 -8 2120 116 7 0 chr15 52034633 52034918 -49345603 - AluSx SINE Alu -25 287 1 2026 84 74 7 chr15 52035195 52035480 -49345041 - AluSx SINE Alu 0 312 9 22 65 0 0 chr15 52035833 52035864 -49344657 + GC_rich Low_complexity Low_complexity 1 31 0 1961 119 0 8 chr15 52036091 52036359 -49344162 - AluSx SINE Alu -46 266 1 2189 78 24 17 chr15 52036484 52036777 -49343744 + AluSq SINE Alu 1 295 -18 2139 69 7 52 chr15 52038418 52038723 -49341798 + AluSq SINE Alu 7 297 -16 2213 78 7 7 chr15 52040603 52040898 -49339623 + AluSq SINE Alu 1 295 -18 2205 98 3 44 chr15 52041834 52042151 -49338370 + AluSp SINE Alu 1 304 -9 209 259 19 19 chr15 52042469 52042523 -49337998 + MIR SINE MIR 20 73 -135 1982 154 0 0 chr15 52042667 52042960 -49337561 + AluSx SINE Alu 6 298 -14 2280 114 0 16 chr15 52042984 52043120 -49337401 + AluSx SINE Alu 1 138 -174 2343 96 3 0 chr15 52043120 52043421 -49337100 + AluSp SINE Alu 1 302 -11 2280 114 0 16 chr15 52043421 52043599 -49336922 + AluSx SINE Alu 138 310 -2 264 291 42 4 chr15 52043903 52044002 -49336519 - MIR3 SINE MIR -28 180 79 777 225 30 6 chr15 52044104 52044273 -49336248 + FAM SINE Alu 1 173 -2 1408 148 66 62 chr15 52044338 52044467 -49336054 + AluJo SINE Alu 11 138 -174 2492 68 0 0 chr15 52044467 52044763 -49335758 + AluY SINE Alu 1 296 -15 1408 148 66 62 chr15 52044763 52044890 -49335631 + AluJo SINE Alu 138 268 -44 2509 66 3 7 chr15 52044957 52045260 -49335261 + AluSp SINE Alu 1 302 -11 2414 68 0 0 chr15 52045385 52045678 -49334843 - AluY SINE Alu -18 293 1 1857 97 4 19 chr15 52045681 52045949 -49334572 - AluSq SINE Alu -6 307 44 2274 107 3 0 chr15 52046078 52046378 -49334143 + AluSx SINE Alu 1 301 -11 1665 178 78 84 chr15 52046607 52046667 -49333854 - LTR2B LTR ERV1 0 490 431 2282 80 42 0 chr15 52046667 52046956 -49333565 + AluSq SINE Alu 1 301 -12 1665 178 78 84 chr15 52046956 52047357 -49333164 - LTR2B LTR ERV1 -59 431 32 2125 92 0 18 chr15 52047598 52047880 -49332641 - AluSc SINE Alu -30 279 3 791 338 86 18 chr15 52048005 52048158 -49332363 + L2 LINE L2 2402 2543 -771 2138 112 0 7 chr15 52048158 52048475 -49332046 + AluSx SINE Alu 1 315 0 791 338 86 18 chr15 52048475 52048773 -49331748 + L2 LINE L2 2543 2885 -429 204 305 78 28 chr15 52048795 52048936 -49331585 + L2 LINE L2 2995 3142 -171 2091 78 32 6 chr15 52049216 52049588 -49330933 - LTR7 LTR ERV1 -18 432 1 2084 109 27 10 chr15 52050404 52050697 -49329824 - AluY SINE Alu -13 298 1 1487 180 42 21 chr15 52050709 52050882 -49329639 - AluJo SINE Alu -17 295 112 198 0 0 0 chr15 52050882 52050904 -49329617 + (TG)n Simple_repeat Simple_repeat 2 23 0 1487 180 42 21 chr15 52050904 52051019 -49329502 - AluJo SINE Alu -200 112 1 2148 108 0 19 chr15 52051200 52051507 -49329014 + AluSq SINE Alu 4 304 -9 2274 103 7 3 chr15 52052389 52052689 -49327832 + AluSx SINE Alu 1 301 -11 1788 166 0 10 chr15 52052702 52052998 -49327523 + AluSx SINE Alu 3 295 -17 2236 96 3 10 chr15 52053087 52053379 -49327142 + AluSp SINE Alu 1 290 -23 414 0 0 0 chr15 52053382 52053428 -49327093 + (TAA)n Simple_repeat Simple_repeat 3 48 0 272 272 18 9 chr15 52053518 52053632 -49326889 + (TA)n Simple_repeat Simple_repeat 1 115 0 209 314 172 30 chr15 52053786 52053955 -49326566 - L2 LINE L2 -995 2319 2127 467 268 145 68 chr15 52054063 52054249 -49326272 - L2 LINE L2 -1246 2068 1898 2133 113 7 0 chr15 52054249 52054560 -49325961 + AluSq SINE Alu 1 313 0 467 268 145 68 chr15 52054560 52054738 -49325783 - L2 LINE L2 -1416 1898 1675 1658 156 14 34 chr15 52054739 52055034 -49325487 - AluJb SINE Alu -15 297 9 279 154 0 0 chr15 52055034 52055073 -49325448 - Alu SINE Alu -258 45 7 869 139 0 8 chr15 52055211 52055340 -49325181 + AluSq/x SINE Alu 7 134 -179 2001 135 0 4 chr15 52055341 52055622 -49324899 + AluSx SINE Alu 1 280 -32 1333 226 3 49 chr15 52055632 52055959 -49324562 + MSTD LTR MaLR 85 396 0 1723 150 5 95 chr15 52056059 52056127 -49324394 + MER31A LTR ERV1 11 84 -401 2021 112 4 0 chr15 52056127 52056396 -49324125 - AluSg SINE Alu -40 270 1 2269 95 3 10 chr15 52056405 52056700 -49323821 - AluSp SINE Alu -20 293 1 1723 150 5 95 chr15 52056700 52057021 -49323500 + MER31A LTR ERV1 92 374 -111 337 130 0 19 chr15 52057343 52057397 -49323124 + LTR54B LTR ERV1 1 53 -445 4758 104 7 13 chr15 52057397 52058069 -49322452 - LTR8 LTR ERV1 0 691 24 1352 113 54 0 chr15 52058069 52058255 -49322266 - AluSq SINE Alu -117 196 1 660 183 63 27 chr15 52058257 52058469 -49322052 + LTR54B LTR ERV1 119 322 -176 4033 109 62 73 chr15 52058469 52058592 -49321929 - LTR8 LTR ERV1 0 691 568 2342 78 7 7 chr15 52058592 52058901 -49321620 - AluSg1 SINE Alu 0 309 1 4033 109 62 73 chr15 52058901 52059173 -49321348 - LTR8 LTR ERV1 -123 568 294 2373 74 3 0 chr15 52059173 52059469 -49321052 - AluSp SINE Alu -16 297 1 4033 109 62 73 chr15 52059469 52059496 -49321025 - LTR8 LTR ERV1 -397 294 268 2023 138 0 3 chr15 52059496 52059787 -49320734 - AluSq SINE Alu -22 291 2 4033 109 62 73 chr15 52059787 52060019 -49320502 - LTR8 LTR ERV1 -423 268 41 2444 84 0 3 chr15 52060019 52060329 -49320192 - AluY SINE Alu -2 309 1 4033 109 62 73 chr15 52060329 52060370 -49320151 - LTR8 LTR ERV1 -650 41 1 660 183 63 27 chr15 52060370 52060415 -49320106 + LTR54B LTR ERV1 322 410 -88 554 161 0 97 chr15 52061263 52061449 -49319072 - AluY SINE Alu -142 169 2 289 119 0 0 chr15 52061449 52061491 -49319030 - LTR8 LTR ERV1 -649 42 1 * 405 252 41 8 chr15 52061491 52061594 -49318927 + LTR54B LTR ERV1 369 475 -23 2232 112 0 0 chr15 52061595 52061890 -49318631 + AluSx SINE Alu 1 295 -17 2180 104 13 7 chr15 52061893 52062192 -49318329 + AluSq SINE Alu 1 301 -12 2358 80 3 13 chr15 52062192 52062491 -49318030 + AluY SINE Alu 1 296 -15 21 36 0 0 chr15 52062963 52062991 -49317530 + AT_rich Low_complexity Low_complexity 1 28 0 2365 89 0 0 chr15 52063577 52063868 -49316653 - AluY SINE Alu -20 291 1 228 35 0 0 chr15 52064016 52064045 -49316476 + (CA)n Simple_repeat Simple_repeat 1 29 0 220 149 27 14 chr15 52064408 52064482 -49316039 + (CCCA)n Simple_repeat Simple_repeat 1 75 0 294 220 12 40 chr15 52064528 52064701 -49315820 + A-rich Low_complexity Low_complexity 5 172 0 1369 149 0 5 chr15 52064713 52064921 -49315600 - AluY SINE Alu -104 207 1 324 102 0 0 chr15 52065068 52065117 -49315404 + (CA)n Simple_repeat Simple_repeat 2 50 0 2366 97 0 13 chr15 52065176 52065486 -49315035 - AluY SINE Alu -5 306 1 822 155 0 0 chr15 52065495 52065624 -49314897 - FLAM_C SINE Alu -3 130 2 2282 86 17 0 chr15 52065667 52065959 -49314562 - AluSp SINE Alu -16 297 1 2239 109 0 13 chr15 52066372 52066683 -49313838 + AluSx SINE Alu 1 307 -5 1960 140 4 0 chr15 52066730 52067008 -49313513 + AluSx SINE Alu 5 283 -29 2341 73 0 51 chr15 52067037 52067353 -49313168 + AluY SINE Alu 1 300 -11 628 78 84 0 chr15 52067407 52067759 -49312762 + (TA)n Simple_repeat Simple_repeat 1 381 0 946 28 18 0 chr15 52068260 52068369 -49312152 + BC200 scRNA scRNA 2 112 -88 436 344 58 69 chr15 52068931 52069396 -49311125 + MLT1K LTR MaLR 106 565 -23 2447 85 3 0 chr15 52069490 52069795 -49310726 - AluSp SINE Alu -7 306 1 1650 146 17 7 chr15 52069795 52070083 -49310438 - L1M3 LINE L1 -575 5608 5318 1887 144 13 13 chr15 52070087 52070392 -49310129 - AluSx SINE Alu -7 305 1 914 149 8 0 chr15 52070392 52070526 -49309995 - AluSq/x SINE Alu -177 135 1 2183 106 14 0 chr15 52070531 52070824 -49309697 - AluSx SINE Alu -15 297 1 210 224 86 0 chr15 52070915 52070973 -49309548 + L2 LINE L2 3210 3272 0 2079 185 83 25 chr15 52071190 52071660 -49308861 + MLT1D LTR MaLR 1 497 -8 2031 104 72 0 chr15 52071796 52072074 -49308447 + AluSq SINE Alu 1 298 -15 670 221 0 0 chr15 52072219 52072350 -49308171 + AluSp SINE Alu 14 144 -169 279 0 0 0 chr15 52072684 52072715 -49307806 + (CA)n Simple_repeat Simple_repeat 1 31 0 701 139 9 9 chr15 52072717 52072832 -49307689 - FRAM SINE Alu -11 165 51 3981 58 0 10 chr15 52072845 52073348 -49307173 + L1P LINE L1 3672 4169 -1977 208 0 0 133 chr15 52073352 52073435 -49307086 + (TCTCCC)n Simple_repeat Simple_repeat 4 75 0 1998 190 83 30 chr15 52074191 52074660 -49305861 + MLT1D LTR MaLR 4 497 -8 2007 108 72 0 chr15 52074796 52075075 -49305446 + AluSq SINE Alu 1 299 -14 2001 149 0 10 chr15 52075220 52075515 -49305006 + AluSx SINE Alu 14 305 -7 24 67 0 0 chr15 52075642 52075687 -49304834 + AT_rich Low_complexity Low_complexity 1 45 0 1785 144 0 34 chr15 52075826 52076117 -49304404 - AluJo SINE Alu -31 281 1 1365 171 91 69 chr15 52076390 52076752 -49303769 + MLT1A2 LTR MaLR 1 370 -4 2130 102 28 3 chr15 52076773 52077058 -49303463 - AluSg SINE Alu -18 292 1 2188 76 44 4 chr15 52077099 52077374 -49303147 - AluY SINE Alu -25 286 1 2176 122 0 3 chr15 52077394 52077688 -49302833 - AluSg SINE Alu -17 293 1 2260 100 7 0 chr15 52077786 52078077 -49302444 - AluSg SINE Alu -17 293 1 3359 26 0 0 chr15 52078121 52078506 -49302015 - L1PA5 LINE L1 0 6154 5770 2017 126 0 0 chr15 52078820 52079122 -49301399 - AluSx SINE Alu 0 306 5 10061 41 5 1 chr15 52080126 52081743 -49298778 - L1PA5 LINE L1 -371 5783 4164 6145 106 37 31 chr15 52081744 52084091 -49296430 - SVA Other Other -518 1386 1 249 151 57 0 chr15 52084092 52084145 -49296376 + G-rich Low_complexity Low_complexity 1 56 0 3981 58 0 10 chr15 52084146 52084649 -49295872 - L1P LINE L1 -1977 4169 3672 688 142 9 9 chr15 52084662 52084775 -49295746 + FRAM SINE Alu 51 163 -13 360 0 0 0 chr15 52084777 52084817 -49295704 + (TG)n Simple_repeat Simple_repeat 2 41 0 2237 97 0 3 chr15 52084845 52085133 -49295388 + AluY SINE Alu 1 287 -24 28 102 0 0 chr15 52085133 52085231 -49295290 + AT_rich Low_complexity Low_complexity 1 98 0 2324 102 7 0 chr15 52085242 52085546 -49294975 - AluSq SINE Alu -7 306 1 1186 177 8 20 chr15 52085637 52085886 -49294635 + AluSq SINE Alu 1 246 -67 580 77 0 0 chr15 52086277 52086355 -49294166 - AluS SINE Alu -235 78 1 2121 123 0 10 chr15 52086446 52086756 -49293765 + AluSq SINE Alu 1 307 -6 2132 141 0 0 chr15 52086762 52087066 -49293455 - AluSx SINE Alu -8 304 1 2147 123 7 0 chr15 52087883 52088184 -49292337 + AluSx SINE Alu 1 303 -9 280 302 77 12 chr15 52088444 52088613 -49291908 + HAL1b LINE L1 495 674 -674 1720 166 10 30 chr15 52088687 52088989 -49291532 - AluJo SINE Alu -16 296 1 2177 112 23 3 chr15 52089035 52089339 -49291182 + AluSq SINE Alu 3 312 -1 1665 81 5 9 chr15 52089982 52090192 -49290329 - AluSg SINE Alu -99 211 3 547 254 29 74 chr15 52090394 52090615 -49289906 + L1MEd LINE L1 700 899 -5220 2528 72 0 0 chr15 52090615 52090919 -49289602 - AluY SINE Alu -7 304 1 547 254 29 74 chr15 52090919 52091075 -49289446 + L1MEd LINE L1 899 1060 -5059 870 168 7 0 chr15 52091088 52091225 -49289296 + AluSx SINE Alu 1 138 -175 707 224 0 6 chr15 52091847 52092003 -49288518 + AluSx SINE Alu 140 294 -15 2111 139 0 0 chr15 52092058 52092353 -49288168 - AluSx SINE Alu -5 307 13 345 200 71 0 chr15 52092572 52092642 -49287879 + AluJ/FRAM SINE Alu 222 296 -6 24 0 0 0 chr15 52092648 52092672 -49287849 + AT_rich Low_complexity Low_complexity 1 24 0 234 0 0 0 chr15 52093075 52093101 -49287420 + (TA)n Simple_repeat Simple_repeat 2 27 0 2207 126 0 0 chr15 52093115 52093417 -49287104 - AluSx SINE Alu -8 304 3 307 303 197 14 chr15 52093470 52093688 -49286833 + MIR SINE MIR 5 262 0 2322 86 3 10 chr15 52093766 52094068 -49286453 - AluSp SINE Alu -12 301 2 17838 136 53 26 chr15 52094164 52096479 -49284042 + L1PB1 LINE L1 1 2254 -4608 2350 90 0 13 chr15 52096479 52096780 -49283741 + AluSg SINE Alu 1 297 -13 17838 136 53 26 chr15 52096780 52097379 -49283142 + L1PB1 LINE L1 2254 2836 -4026 2398 103 0 0 chr15 52097379 52097689 -49282832 - AluSg SINE Alu 0 310 1 17838 136 53 26 chr15 52097689 52097842 -49282679 + L1PB1 LINE L1 2836 2983 -3879 2196 78 4 7 chr15 52097842 52098167 -49282354 - AluSg SINE Alu 0 324 1 17838 136 53 26 chr15 52098167 52098455 -49282066 + L1PB1 LINE L1 2983 3262 -3600 2266 111 0 0 chr15 52098455 52098752 -49281769 - AluSx SINE Alu -15 297 1 2208 75 0 87 chr15 52098762 52099083 -49281438 - AluY SINE Alu -18 293 1 17838 136 53 26 chr15 52099083 52099737 -49280784 + L1PB1 LINE L1 3270 4123 -2739 4601 206 17 37 chr15 52099874 52100676 -49279845 + L1 LINE L1 3464 4236 -2626 1917 127 17 7 chr15 52100676 52100967 -49279554 - AluSx SINE Alu -18 294 1 4601 206 17 37 chr15 52100967 52101367 -49279154 + L1 LINE L1 4236 4642 -2220 781 236 5 19 chr15 52101913 52102129 -49278392 + AluY SINE Alu 75 287 -24 28 102 0 0 chr15 52102129 52102227 -49278294 + AT_rich Low_complexity Low_complexity 1 98 0 1980 139 13 0 chr15 52102238 52102539 -49277982 - AluSx SINE Alu -7 305 1 6082 201 17 45 chr15 52102541 52102939 -49277582 + L1PB1 LINE L1 4254 4661 -2206 1944 137 0 11 chr15 52102939 52103223 -49277298 + AluSx SINE Alu 1 281 -31 360 0 0 0 chr15 52103223 52103263 -49277258 + (CA)n Simple_repeat Simple_repeat 1 40 0 6082 201 17 45 chr15 52103263 52104775 -49275746 + L1PB1 LINE L1 4660 6212 -655 2246 96 44 0 chr15 52104775 52105068 -49275453 + AluSp SINE Alu 2 307 -6 6082 201 17 45 chr15 52105068 52105478 -49275043 + L1PB1 LINE L1 6212 6632 -235 351 44 0 0 chr15 52105478 52105523 -49274998 + (CA)n Simple_repeat Simple_repeat 2 46 0 6082 201 17 45 chr15 52105523 52105653 -49274868 + L1PB1 LINE L1 6632 6629 -238 2310 113 3 0 chr15 52105653 52105954 -49274567 - AluSp SINE Alu -11 302 1 6082 201 17 45 chr15 52105954 52106186 -49274335 + L1PB1 LINE L1 6628 6865 -2 1767 163 10 14 chr15 52106229 52106523 -49273998 + AluJb SINE Alu 1 293 -19 232 258 5 70 chr15 52107060 52107246 -49273275 + T-rich Low_complexity Low_complexity 4 177 0 519 245 63 31 chr15 52107411 52107570 -49272951 + MIR3 SINE MIR 8 171 -37 251 35 0 0 chr15 52107633 52107662 -49272859 + (CA)n Simple_repeat Simple_repeat 2 30 0 828 147 43 37 chr15 52108071 52108234 -49272287 + MER3 DNA MER1_type 6 122 -87 2179 100 10 3 chr15 52109141 52109450 -49271071 + AluSq SINE Alu 1 311 -2 2409 235 119 41 chr15 52109473 52109564 -49270957 - MER21B LTR ERV1 -11 852 770 2586 53 0 28 chr15 52109564 52109883 -49270638 - AluY SINE Alu -1 310 1 2409 235 119 41 chr15 52109883 52110148 -49270373 - MER21B LTR ERV1 -93 770 527 2471 74 0 0 chr15 52110148 52110445 -49270076 - AluSx SINE Alu -15 297 1 2409 235 119 41 chr15 52110445 52110638 -49269883 - MER21B LTR ERV1 -336 527 350 1913 133 10 23 chr15 52110638 52110938 -49269583 - AluJb SINE Alu -15 297 2 1849 147 0 29 chr15 52110941 52111253 -49269268 - AluJo SINE Alu -8 304 2 2409 235 119 41 chr15 52111253 52111481 -49269040 - MER21B LTR ERV1 -514 349 8 383 270 0 22 chr15 52111497 52111586 -49268935 - MER21B LTR ERV1 -776 87 1 2556 57 0 0 chr15 52111608 52111906 -49268615 - AluY SINE Alu -13 298 1 2226 108 0 0 chr15 52111947 52112233 -49268288 - AluSx SINE Alu -26 286 1 2068 131 10 0 chr15 52112431 52112729 -49267792 + AluSx SINE Alu 3 303 -9 2083 137 0 9 chr15 52112977 52113292 -49267229 + AluSx SINE Alu 1 312 0 318 219 14 0 chr15 52113306 52113379 -49267142 + L1MCa LINE L1 1995 2068 -4358 * 349 289 0 0 chr15 52113346 52113436 -49267085 + L1MC4 LINE L1 6894 6983 -1339 210 191 0 0 chr15 52113436 52113478 -49267043 + (TA)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr15 52113493 52113514 -49267007 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr15 52113721 52113749 -49266772 + AT_rich Low_complexity Low_complexity 1 28 0 2340 96 0 3 chr15 52113802 52114114 -49266407 + AluSx SINE Alu 1 311 -1 314 254 87 89 chr15 52114205 52114347 -49266174 + L1M4 LINE L1 4151 4292 -1854 2232 119 0 0 chr15 52114347 52114641 -49265880 + AluSg SINE Alu 1 294 -16 314 254 87 89 chr15 52114641 52114790 -49265731 + L1M4 LINE L1 4292 4440 -1706 2171 114 3 3 chr15 52114790 52115097 -49265424 + AluSx SINE Alu 1 307 -5 314 254 87 89 chr15 52115097 52115319 -49265202 + L1M4 LINE L1 4440 4664 -1482 411 302 53 18 chr15 52115332 52115557 -49264964 + L1M4b LINE L1 21 253 -6606 1468 172 4 4 chr15 52115576 52115808 -49264713 - MER46A DNA MER2_type -2 234 3 747 270 63 39 chr15 52116079 52116276 -49264245 + L1M4b LINE L1 2273 2481 -4657 1460 219 51 17 chr15 52116276 52116568 -49263953 + AluJo SINE Alu 1 302 0 747 270 63 39 chr15 52116568 52116655 -49263866 + L1M4b LINE L1 2481 2564 -4574 1847 140 57 86 chr15 52116673 52116982 -49263539 + L1MB3 LINE L1 5774 6069 -114 2405 88 0 3 chr15 52116982 52117288 -49263233 + AluSx SINE Alu 1 305 -7 1847 140 57 86 chr15 52117288 52117399 -49263122 + L1MB3 LINE L1 6069 6182 -1 314 242 95 56 chr15 52117466 52117697 -49262824 + L1M4b LINE L1 2586 2825 -4313 189 74 0 0 chr15 52117715 52117742 -49262779 + (TATG)n Simple_repeat Simple_repeat 1 27 0 248 176 0 0 chr15 52117745 52117796 -49262725 + LTR66 LTR ERVL 394 444 -166 238 303 15 0 chr15 52117809 52117875 -49262646 + L1MCa LINE L1 3 69 -6357 933 170 16 62 chr15 52117876 52118070 -49262451 + AluSq SINE Alu 1 185 -128 6604 57 124 59 chr15 52119342 52120437 -49260084 + MER11A LTR ERVK 1 1266 0 1525 279 37 37 chr15 52120437 52120931 -49259590 + MER51C-int LTR ERV1 5842 6334 -1482 2127 122 67 28 chr15 52120931 52121292 -49259229 + THE1C LTR MaLR 1 375 0 1525 279 37 37 chr15 52121292 52121822 -49258699 + MER51C-int LTR ERV1 6334 7816 0 1241 210 168 76 chr15 52121835 52122306 -49258215 + MER51C LTR ERV1 127 640 0 2969 178 28 72 chr15 52122310 52122487 -49258034 + L1MB7 LINE L1 5494 5677 -507 2014 126 0 7 chr15 52122487 52122796 -49257725 + AluSx SINE Alu 1 307 0 2969 178 28 72 chr15 52122796 52123179 -49257342 + L1MB7 LINE L1 5677 6021 -163 2107 125 0 0 chr15 52123179 52123487 -49257034 - AluSg SINE Alu 0 308 1 2969 178 28 72 chr15 52123487 52123633 -49256888 + L1MB7 LINE L1 6021 6172 -12 1897 135 57 3 chr15 52123636 52123918 -49256603 - AluSx SINE Alu -15 297 1 297 0 0 0 chr15 52123926 52123959 -49256562 + (T)n Simple_repeat Simple_repeat 1 33 0 1891 154 14 43 chr15 52124106 52124294 -49256227 + L1MB8 LINE L1 5416 5608 -575 2494 69 0 7 chr15 52124294 52124597 -49255924 + AluY SINE Alu 1 301 -10 1891 154 14 43 chr15 52124597 52124695 -49255826 + L1MB8 LINE L1 5608 5691 -492 3519 85 2 9 chr15 52124695 52125142 -49255379 - MLT2A1 LTR ERVL 0 444 1 1891 154 14 43 chr15 52125142 52125223 -49255298 + L1MB8 LINE L1 5691 5773 -410 2393 83 0 3 chr15 52125805 52126107 -49254414 + AluY SINE Alu 1 301 -10 201 39 0 0 chr15 52126263 52126289 -49254232 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 2208 125 0 3 chr15 52126289 52126584 -49253937 - AluSq SINE Alu -15 298 3 1196 148 45 20 chr15 52126681 52126883 -49253638 + AluJb SINE Alu 90 296 -16 256 264 107 25 chr15 52126914 52127073 -49253448 + L2 LINE L2 1569 1740 -1574 265 231 0 0 chr15 52127184 52127236 -49253285 + LTR30 LTR ERV1 1 52 -670 1675 95 182 224 chr15 52127241 52127879 -49252642 + LTR12 LTR ERV1 57 590 -124 373 243 85 31 chr15 52127935 52128076 -49252445 + MLT1H LTR MaLR 61 175 -234 183 80 0 0 chr15 52128201 52128226 -49252295 + (T)n Simple_repeat Simple_repeat 1 25 0 272 156 234 13 chr15 52128285 52128362 -49252159 + MLT1H LTR MaLR 296 389 -1 600 265 124 77 chr15 52128778 52128899 -49251622 + Tigger8 DNA MER2_type 15 129 -537 2249 112 0 3 chr15 52128899 52129204 -49251317 + AluY SINE Alu 1 304 -7 600 265 124 77 chr15 52129204 52129444 -49251077 + Tigger8 DNA MER2_type 129 393 -273 2165 129 0 3 chr15 52129484 52129786 -49250735 + AluSx SINE Alu 1 301 -11 2287 91 0 3 chr15 52129967 52130264 -49250257 - AluSg SINE Alu -14 296 1 1293 194 8 4 chr15 52130279 52130531 -49249990 + L1MB8 LINE L1 5920 6172 -6 2350 74 0 3 chr15 52130763 52131059 -49249462 + AluY SINE Alu 1 295 -16 210 261 45 23 chr15 52131550 52131638 -49248883 + GA-rich Low_complexity Low_complexity 4 93 0 332 132 69 7 chr15 52131723 52131867 -49248654 + (TATAA)n Simple_repeat Simple_repeat 5 157 0 41 203 0 0 chr15 52131903 52131972 -49248549 + AT_rich Low_complexity Low_complexity 1 69 0 269 214 0 0 chr15 52131972 52132028 -49248493 + T-rich Low_complexity Low_complexity 1 56 0 171 0 0 0 chr15 52132028 52132199 -49248322 + AT_rich Low_complexity Low_complexity 1 171 0 413 252 19 0 chr15 52132323 52132426 -49248095 + AluSg/x SINE Alu 191 295 -14 1176 181 186 45 chr15 52132564 52132733 -49247788 - Charlie4a DNA MER1_type -1453 508 364 2183 101 0 0 chr15 52132733 52133021 -49247500 - AluSc SINE Alu -19 290 3 1176 181 186 45 chr15 52133021 52133160 -49247361 - Charlie4a DNA MER1_type -1597 364 246 1728 156 150 9 chr15 52133160 52133480 -49247041 + MLT1A1 LTR MaLR 1 365 0 1176 181 186 45 chr15 52133480 52133574 -49246947 - Charlie4a DNA MER1_type -1715 246 48 1721 170 3 14 chr15 52133896 52134184 -49246337 - AluJo SINE Alu -18 294 10 2486 72 3 0 chr15 52134207 52134514 -49246007 - AluSp SINE Alu -4 309 2 2268 107 0 0 chr15 52134594 52134892 -49245629 - AluSx SINE Alu -8 304 7 1125 189 126 0 chr15 52134934 52135215 -49245306 + MER58 DNA MER1_type 1 2408 -12 239 255 66 85 chr15 52135288 52135394 -49245127 + MER5A DNA MER1_type 71 174 -15 1588 173 13 29 chr15 52135644 52135951 -49244570 + AluJo SINE Alu 3 304 -8 1792 153 0 27 chr15 52136131 52136432 -49244089 + AluSx SINE Alu 1 293 -19 223 204 20 0 chr15 52136442 52136491 -49244030 + MER5B DNA MER1_type 5 54 -124 1286 139 5 28 chr15 52136836 52137052 -49243469 + AluSx SINE Alu 8 218 -94 550 245 126 7 chr15 52137140 52137291 -49243230 - MER5B DNA MER1_type -4 174 6 512 275 140 14 chr15 52137281 52137488 -49243033 + MIR SINE MIR 16 248 -14 * 652 247 68 106 chr15 52137640 52138200 -49242321 + MER34 LTR ERV1 1 527 -15 1940 112 27 27 chr15 52138200 52138494 -49242027 + AluSx SINE Alu 1 294 -18 652 247 68 106 chr15 52138494 52138510 -49242011 + MER34 LTR ERV1 527 542 0 180 0 0 0 chr15 52139480 52139500 -49241021 + (A)n Simple_repeat Simple_repeat 1 20 0 817 61 0 0 chr15 52139510 52139609 -49240912 + AluS SINE Alu 1 99 -214 1688 128 12 0 chr15 52139748 52140005 -49240516 + MER101 LTR ERV1 215 474 0 254 301 172 18 chr15 52140208 52140371 -49240150 - MIR3 SINE MIR -6 202 15 2076 119 4 0 chr15 52141153 52141431 -49239090 + AluSp SINE Alu 1 279 -34 429 269 0 0 chr15 52141601 52141705 -49238816 - AluSc SINE Alu -106 203 100 262 233 12 76 chr15 52141710 52141882 -49238639 + A-rich Low_complexity Low_complexity 2 162 0 228 259 0 0 chr15 52141958 52142016 -49238505 + A-rich Low_complexity Low_complexity 1 58 0 209 266 19 45 chr15 52142061 52142215 -49238306 + A-rich Low_complexity Low_complexity 5 154 0 10262 89 4 1 chr15 52142359 52143762 -49236759 + L1PA6 LINE L1 3514 4920 -1226 7255 64 8 3 chr15 52143865 52144926 -49235595 + L1PA6 LINE L1 5087 6151 -3 843 250 42 38 chr15 52144920 52145184 -49235337 - MER90 LTR ERV1 -310 265 1 245 241 72 12 chr15 52145252 52145335 -49235186 + L1ME3 LINE L1 5570 5657 -513 249 62 0 0 chr15 52145335 52145367 -49235154 - MER5A DNA MER1_type -124 65 34 182 159 227 0 chr15 52145336 52145380 -49235141 + MER5A DNA MER1_type 136 189 0 * 804 186 86 95 chr15 52145388 52145609 -49234912 - MER20 DNA MER1_type 0 219 1 346 198 352 6 chr15 52145634 52145799 -49234722 + L1ME3 LINE L1 5674 5892 -272 2178 113 10 7 chr15 52145842 52146151 -49234370 - AluSq SINE Alu -3 310 1 2312 155 14 0 chr15 52146222 52146583 -49233938 - MER47A DNA MER2_type 0 366 1 1017 200 5 37 chr15 52146812 52147002 -49233519 + MER5A DNA MER1_type 5 188 -1 2449 72 0 0 chr15 52147255 52147559 -49232962 - AluY SINE Alu -7 304 1 2658 85 47 14 chr15 52147826 52148189 -49232332 - THE1C LTR MaLR 0 375 1 303 265 83 97 chr15 52148445 52148734 -49231787 - L1MC4 LINE L1 -1015 7027 6658 2199 118 0 7 chr15 52148941 52149238 -49231283 - AluSx SINE Alu -17 295 1 2067 175 95 39 chr15 52149615 52150079 -49230442 - LTR2B LTR ERV1 0 490 1 13553 90 5 9 chr15 52150079 52150606 -49229915 - Harlequin LTR ERV1 0 6896 6368 2526 80 0 0 chr15 52150606 52150917 -49229604 - AluY SINE Alu 0 311 1 13553 90 5 9 chr15 52150917 52152330 -49228191 - Harlequin LTR ERV1 -528 6368 4945 * 17972 163 4 11 chr15 52152326 52155197 -49225324 - HERVE LTR ERV1 -1806 6007 3156 625 247 0 14 chr15 52155258 52155404 -49225117 - MER115 DNA AcHobo -80 613 470 286 321 151 0 chr15 52155420 52155579 -49224942 - MER115 DNA AcHobo -389 304 122 822 176 50 60 chr15 52155790 52155972 -49224549 - FRAM SINE Alu -1 175 1 444 233 101 16 chr15 52155978 52156107 -49224414 + MIR SINE MIR 74 213 -49 768 203 0 22 chr15 52156175 52156313 -49224208 - FLAM_C SINE Alu -7 136 2 2560 157 47 0 chr15 52156443 52156850 -49223671 - MSTB LTR MaLR 0 426 1 1661 181 3 23 chr15 52157283 52157582 -49222939 + AluJo SINE Alu 1 293 -19 2536 63 0 3 chr15 52158340 52158643 -49221878 + AluY SINE Alu 1 302 -9 14630 223 31 49 chr15 52158703 52160194 -49220327 - L1PA15 LINE L1 -223 7380 5864 2329 120 48 31 chr15 52160194 52160552 -49219969 + THE1B LTR MaLR 1 364 0 14630 223 31 49 chr15 52160552 52161962 -49218559 - L1PA15 LINE L1 -1739 5864 4430 1085 92 0 0 chr15 52161962 52162104 -49218417 - AluY SINE Alu -6 305 164 14630 223 31 49 chr15 52162104 52162116 -49218405 - L1PA15 LINE L1 -3173 4430 4419 2033 91 0 11 chr15 52162116 52162381 -49218140 - AluSc SINE Alu -47 262 1 14630 223 31 49 chr15 52162381 52165189 -49215332 - L1PA15 LINE L1 -3184 4419 1607 428 282 0 55 chr15 52165239 52165441 -49215080 - L1PA15 LINE L1 -5770 1811 1621 1669 181 16 10 chr15 52165475 52165784 -49214737 + AluJo SINE Alu 1 311 -1 5096 132 3 3 chr15 52165936 52166685 -49213836 + L1PA15 LINE L1 5416 6164 -1 1752 147 9 61 chr15 52166790 52167116 -49213405 - AluSx SINE Alu -3 309 1 759 200 55 18 chr15 52167356 52167521 -49213000 - MER20 DNA MER1_type -20 199 29 742 35 0 0 chr15 52167804 52167889 -49212632 + THE1A LTR MaLR 271 355 0 1203 253 119 23 chr15 52167889 52168277 -49212244 - L1MC4 LINE L1 -404 7638 7214 2795 229 93 28 chr15 52168629 52168797 -49211724 - L1ME1 LINE L1 -5 6956 6800 2224 217 56 24 chr15 52168797 52169336 -49211185 - LTR38 LTR ERV1 0 556 1 2795 229 93 28 chr15 52169336 52169944 -49210577 - L1ME1 LINE L1 -161 6800 6130 1291 239 65 21 chr15 52169953 52170384 -49210137 - L1ME1 LINE L1 -873 6068 5619 452 242 57 18 chr15 52170415 52170568 -49209953 - L1ME1 LINE L1 -4466 2577 2323 1790 88 25 0 chr15 52170604 52170843 -49209678 - L1PB1 LINE L1 -3 6148 5904 387 174 29 0 chr15 52170843 52170912 -49209609 - L1ME1 LINE L1 -4670 2452 2382 501 231 0 0 chr15 52170914 52171022 -49209499 - L1ME1 LINE L1 -5232 1191 1084 1721 264 73 35 chr15 52171311 52171917 -49208604 - L1ME1 LINE L1 -5764 659 31 1755 97 9 0 chr15 52172017 52172244 -49208277 - AluSc SINE Alu -6 303 75 256 245 0 0 chr15 52172342 52172391 -49208130 + MLT1A1 LTR MaLR 317 365 0 27 0 0 0 chr15 52172391 52172418 -49208103 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr15 52172581 52172602 -49207919 + AT_rich Low_complexity Low_complexity 1 21 0 4323 195 53 11 chr15 52172625 52173714 -49206807 + L1PA13 LINE L1 1 1316 -5471 2503 87 0 0 chr15 52173759 52174070 -49206451 - AluSx SINE Alu -1 311 1 385 282 69 8 chr15 52174184 52174315 -49206206 + L2 LINE L2 3175 3313 0 2425 112 0 0 chr15 52174907 52175219 -49205302 + AluSx SINE Alu 1 312 0 394 218 214 20 chr15 52175221 52175242 -49205279 - L1M4 LINE L1 -2896 3250 3234 1654 164 34 20 chr15 52175242 52175535 -49204986 - AluJo SINE Alu -15 297 1 394 218 214 20 chr15 52175535 52175761 -49204760 - L1M4 LINE L1 -2912 3234 2955 932 145 0 93 chr15 52176239 52176432 -49204089 - AluSg/x SINE Alu -1 311 137 1088 126 0 78 chr15 52177012 52177203 -49203318 - AluSg/x SINE Alu 0 312 137 2129 95 7 0 chr15 52181341 52181614 -49198907 + AluSx SINE Alu 1 275 -37 259 23 45 23 chr15 52181619 52181663 -49198858 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 198 0 0 0 chr15 52181768 52181790 -49198731 + (TG)n Simple_repeat Simple_repeat 2 23 0 273 81 0 0 chr15 52182851 52182888 -49197633 - MER116 DNA Mariner -5 75 39 306 338 56 60 chr15 52183048 52183528 -49196993 - HSMAR1 DNA Mariner -208 1079 602 2106 131 0 0 chr15 52186718 52187009 -49193512 - AluSx SINE Alu -21 291 1 2299 98 0 13 chr15 52187115 52187420 -49193101 + AluSc SINE Alu 1 301 -8 647 252 161 70 chr15 52187927 52188343 -49192178 - L1MC4a LINE L1 -1779 6029 5576 859 215 143 22 chr15 52188465 52188870 -49191651 - L1ME4a LINE L1 -25 7901 6004 587 242 168 27 chr15 52188903 52189433 -49191088 + LTR50 LTR ERVL 1 771 -24 448 168 97 113 chr15 52189453 52189534 -49190987 - L1MC5 LINE L1 -542 7419 7338 2251 127 56 9 chr15 52189534 52189856 -49190665 - MER1B DNA MER1_type 0 337 1 448 168 97 113 chr15 52189856 52189959 -49190562 - L1MC5 LINE L1 -623 7338 7238 385 139 0 56 chr15 52189975 52190047 -49190474 - MLT1E3 LTR MaLR 0 624 557 1479 176 9 52 chr15 52190047 52190181 -49190340 + L1M4 LINE L1 3603 3741 -2405 1588 179 3 36 chr15 52190181 52190483 -49190038 + AluJo SINE Alu 1 292 -20 1479 176 9 52 chr15 52190483 52190695 -49189826 + L1M4 LINE L1 3741 3934 -2212 17235 121 19 73 chr15 52190715 52190739 -49189782 + L1PA4 LINE L1 1 25 -6445 2172 110 3 19 chr15 52190739 52191049 -49189472 + AluSq SINE Alu 1 305 -8 17235 121 19 73 chr15 52191049 52192065 -49188456 + L1PA4 LINE L1 25 1094 -5376 1998 102 6 51 chr15 52192065 52192378 -49188143 - AluSq SINE Alu -14 299 1 17235 121 19 73 chr15 52192378 52192854 -49187667 + L1PA4 LINE L1 1094 1594 -4876 2318 103 0 16 chr15 52192854 52193165 -49187356 + AluY SINE Alu 5 310 -1 17235 121 19 73 chr15 52193165 52194191 -49186330 + L1PA4 LINE L1 1594 2673 -3797 1461 13 0 0 chr15 52194191 52194347 -49186174 + L1PA4 LINE L1 6309 6464 -6 17235 121 19 73 chr15 52194347 52198330 -49182191 + L1PA4 LINE L1 2673 6464 -6 11026 113 23 15 chr15 52198322 52199347 -49181174 + L1PA10 LINE L1 3607 4622 -1546 * 2018 113 33 4 chr15 52199347 52199645 -49180876 + AluSg SINE Alu 1 306 0 11026 113 23 15 chr15 52199645 52199978 -49180543 + L1PA10 LINE L1 4622 4951 -1217 2018 150 49 25 chr15 52199978 52200344 -49180177 - THE1C LTR MaLR 0 375 1 11026 113 23 15 chr15 52200344 52201056 -49179465 + L1PA10 LINE L1 4951 5698 -470 2250 117 3 0 chr15 52201056 52201355 -49179166 + AluSx SINE Alu 1 300 -12 11026 113 23 15 chr15 52201355 52201681 -49178840 + L1PA10 LINE L1 5698 6020 -148 4041 146 38 98 chr15 52201680 52201977 -49178544 + L1MB7 LINE L1 5064 5377 -807 * 1061 72 0 66 chr15 52201977 52202030 -49178491 - L1PB1 LINE L1 -3 6148 6093 2066 112 52 0 chr15 52202030 52202316 -49178205 - AluSg SINE Alu -9 301 1 1061 72 0 66 chr15 52202316 52202414 -49178107 - L1PB1 LINE L1 -58 6093 6007 4041 146 38 98 chr15 52202414 52203150 -49177371 + L1MB7 LINE L1 5377 6073 -111 345 229 0 0 chr15 52203328 52203411 -49177110 + L1MB3 LINE L1 6099 6181 -2 1084 236 183 22 chr15 52203417 52203778 -49176743 - MLT1E2 LTR MaLR -50 576 158 43 81 0 0 chr15 52204180 52204279 -49176242 + GC_rich Low_complexity Low_complexity 1 99 0 337 280 162 50 chr15 52204479 52204818 -49175703 + L1M2 LINE L1 861 1237 -5612 463 219 57 0 chr15 52205238 52205343 -49175178 + MIR3 SINE MIR 81 191 -17 235 0 0 54 chr15 52205376 52205413 -49175108 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 514 205 55 31 chr15 52205785 52205912 -49174609 + L2 LINE L2 3184 3313 0 2650 41 0 19 chr15 52206009 52206326 -49174195 + AluY SINE Alu 1 311 0 1698 138 3 35 chr15 52206408 52206697 -49173824 + AluJo SINE Alu 1 280 -32 417 209 112 75 chr15 52206953 52207087 -49173434 + MER5B DNA MER1_type 21 159 -19 399 325 45 104 chr15 52207145 52207350 -49173171 - L2 LINE L2 -67 3205 2989 2301 95 7 7 chr15 52207350 52207654 -49172867 + AluSg1 SINE Alu 1 304 -5 1105 153 25 20 chr15 52207662 52207865 -49172656 + L1MB4 LINE L1 5970 6173 -7 399 325 45 104 chr15 52207865 52208170 -49172351 - L2 LINE L2 -290 2982 2718 434 153 0 0 chr15 52208309 52208368 -49172153 - AluS SINE Alu -251 60 2 2078 112 30 3 chr15 52208560 52208864 -49171657 + AluSx SINE Alu 1 312 0 672 269 31 40 chr15 52208973 52209200 -49171321 + MIR SINE MIR 1 225 -37 217 200 31 31 chr15 52209203 52209253 -49171268 + (TAA)n Simple_repeat Simple_repeat 3 56 -11 1781 144 0 25 chr15 52209253 52209566 -49170955 + AluSx SINE Alu 5 310 0 217 200 31 31 chr15 52209566 52209579 -49170942 + (TAA)n Simple_repeat Simple_repeat 55 67 0 291 344 90 0 chr15 52209799 52209921 -49170600 + MIR SINE MIR 20 152 -56 187 315 34 45 chr15 52210045 52210134 -49170387 - L2 LINE L2 -177 3095 3008 1688 159 33 20 chr15 52210356 52210657 -49169864 - AluJo SINE Alu -7 305 1 254 217 163 36 chr15 52210717 52210883 -49169638 - L1M4 LINE L1 -3005 3141 2955 2028 125 14 3 chr15 52211435 52211731 -49168790 - AluSg SINE Alu -11 299 1 7738 188 134 26 chr15 52211731 52212395 -49168126 - L1PA16 LINE L1 -4 6865 6274 1750 174 0 7 chr15 52212395 52212683 -49167838 - AluJb SINE Alu -26 286 1 7738 188 134 26 chr15 52212683 52212848 -49167673 - L1PA16 LINE L1 -595 6274 6128 1543 147 4 0 chr15 52212848 52213086 -49167435 - AluJo SINE Alu -1 311 73 7738 188 134 26 chr15 52213086 52213971 -49166550 - L1PA16 LINE L1 -741 6128 5340 390 21 0 0 chr15 52213971 52214018 -49166503 + (TG)n Simple_repeat Simple_repeat 2 48 0 7738 188 134 26 chr15 52214018 52215433 -49165088 - L1PA16 LINE L1 -1529 5340 3364 3556 147 13 0 chr15 52215468 52215992 -49164529 - L1PA16 LINE L1 -6318 531 1 264 159 23 0 chr15 52216059 52216103 -49164418 - MER5B DNA MER1_type -1 177 133 381 194 82 0 chr15 52216250 52216348 -49164173 - L1MC3 LINE L1 -1 7784 7679 27 73 0 0 chr15 52216357 52216412 -49164109 + AT_rich Low_complexity Low_complexity 1 55 0 2904 162 53 9 chr15 52216522 52217046 -49163475 - L1MB2 LINE L1 -3 6168 5622 1967 136 65 26 chr15 52217058 52217397 -49163124 + THE1B LTR MaLR 1 352 -12 231 175 0 0 chr15 52217434 52217474 -49163047 - L1MB2 LINE L1 -569 5611 5572 3490 165 57 32 chr15 52217653 52218538 -49161983 + L1M2 LINE L1 4573 5434 -878 863 173 0 8 chr15 52218538 52218671 -49161850 + AluJo/FLAM SINE Alu 2 133 -169 2324 100 0 3 chr15 52218671 52218971 -49161550 + AluSg SINE Alu 1 299 -11 3490 165 57 32 chr15 52218971 52219261 -49161260 + L1M2 LINE L1 5433 5772 -540 1398 142 36 24 chr15 52219291 52219544 -49160977 - Tigger2 DNA MER2_type -11 2707 2452 4294 136 24 1 chr15 52219593 52220257 -49160264 - Tigger2 DNA MER2_type -1961 757 79 261 83 0 0 chr15 52220289 52220325 -49160196 + (TG)n Simple_repeat Simple_repeat 1 36 0 596 228 123 0 chr15 52220600 52220762 -49159759 - MIR SINE MIR -2 260 79 827 272 0 11 chr15 52220810 52221001 -49159520 - MER5A DNA MER1_type 0 189 1 291 152 51 38 chr15 52221088 52221167 -49159354 - HAL1b LINE L1 0 1348 1269 1343 238 257 13 chr15 52221197 52221738 -49158783 + LTR50 LTR ERVL 120 792 -3 2917 3 0 0 chr15 52221823 52222132 -49158389 + AluYa5 SINE Alu 1 309 -2 2227 67 46 11 chr15 52222138 52222421 -49158100 + AluSx SINE Alu 1 293 -19 4112 100 101 16 chr15 52222532 52223144 -49157377 + MER4A LTR ERV1 1 664 0 4335 171 47 33 chr15 52223264 52223415 -49157106 - L1MB7 LINE L1 -55 6129 5982 1735 124 0 34 chr15 52223415 52223681 -49156840 - AluSx SINE Alu -12 300 44 4335 171 47 33 chr15 52223681 52224533 -49155988 - L1MB7 LINE L1 -202 5982 5113 24 32 0 0 chr15 52225091 52225122 -49155399 + AT_rich Low_complexity Low_complexity 1 31 0 869 213 0 12 chr15 52225165 52225329 -49155192 - FRAM SINE Alu -14 162 1 1024 199 11 5 chr15 52226145 52226336 -49154185 - MIR SINE MIR -38 224 33 359 336 53 60 chr15 52226792 52227182 -49153339 - L2 LINE L2 -198 3074 2686 477 290 95 68 chr15 52227182 52227403 -49153118 + MIR SINE MIR 2 228 -34 2391 80 7 7 chr15 52227574 52227876 -49152645 + AluSx SINE Alu 1 302 -10 571 306 89 32 chr15 52228062 52228431 -49152090 + L2 LINE L2 2004 2393 -921 1820 158 30 0 chr15 52229155 52229458 -49151063 - AluJo SINE Alu 0 312 1 205 335 130 65 chr15 52229621 52229757 -49150764 + L2 LINE L2 3044 3201 -71 1727 148 26 36 chr15 52229757 52230061 -49150460 - AluJb SINE Alu -11 301 1 205 335 130 65 chr15 52230061 52230139 -49150382 + L2 LINE L2 3201 3272 0 489 218 112 82 chr15 52230558 52230728 -49149793 - MER5A DNA MER1_type -1 188 14 708 216 82 26 chr15 52231877 52232071 -49148450 + L2 LINE L2 2602 2806 -508 1328 291 40 36 chr15 52232221 52232692 -49147829 + L2 LINE L2 2836 3308 -5 22 0 0 0 chr15 52233311 52233333 -49147188 + GC_rich Low_complexity Low_complexity 1 22 0 993 169 62 164 chr15 52233952 52234285 -49146236 - MLT1A1 LTR MaLR -3 362 75 2508 61 0 0 chr15 52234285 52234582 -49145939 + AluY SINE Alu 1 297 -14 993 169 62 164 chr15 52234582 52234651 -49145870 - MLT1A1 LTR MaLR -290 75 1 932 76 8 0 chr15 52234654 52234785 -49145736 + L1PA13 LINE L1 5355 5486 -682 376 100 0 0 chr15 52234783 52234833 -49145688 - L1P4 LINE L1 -608 5555 5506 * 4271 84 4 7 chr15 52234834 52235394 -49145127 + L1PA13 LINE L1 5606 6163 0 1417 76 32 0 chr15 52235648 52235833 -49144688 + AluY SINE Alu 110 300 -11 264 265 0 0 chr15 52235833 52235882 -49144639 - MER58 DNA MER1_type -2371 49 1 896 215 15 133 chr15 52236642 52236958 -49143563 - LTR41 LTR ERVL 0 795 497 1109 173 92 28 chr15 52237031 52237280 -49143241 - LTR41 LTR ERVL -508 265 1 280 352 28 59 chr15 52237447 52237482 -49143039 + L2 LINE L2 2449 2484 -830 1973 133 28 0 chr15 52237482 52237768 -49142753 - AluSq SINE Alu -19 294 1 280 352 28 59 chr15 52237768 52237985 -49142536 + L2 LINE L2 2484 2693 -621 2313 201 91 113 chr15 52238001 52238091 -49142430 - L1MD2 LINE L1 -15 6344 6254 1873 163 3 3 chr15 52238091 52238385 -49142136 - AluSx SINE Alu -17 295 2 2313 201 91 113 chr15 52238385 52238985 -49141536 - L1MD2 LINE L1 -105 6254 5671 1406 160 24 101 chr15 52238985 52239322 -49141199 - AluJo SINE Alu -1 311 1 2313 201 91 113 chr15 52239322 52239429 -49141092 - L1MD2 LINE L1 -688 5671 5563 590 336 88 47 chr15 52239429 52239522 -49140999 + L2 LINE L2 2688 2776 -496 2112 98 22 38 chr15 52239522 52239840 -49140681 - AluSp SINE Alu 0 313 1 590 336 88 47 chr15 52239840 52240309 -49140212 + L2 LINE L2 2776 3272 0 1213 145 0 78 chr15 52240596 52240638 -49139883 + AluJo SINE Alu 88 132 -180 1879 143 0 7 chr15 52240638 52240945 -49139576 - AluSx SINE Alu -7 305 1 1213 145 0 78 chr15 52240945 52241144 -49139377 + AluJo SINE Alu 132 310 -2 2394 79 10 0 chr15 52241724 52242029 -49138492 - AluSq SINE Alu -5 308 1 1640 156 44 88 chr15 52242185 52242524 -49137997 - L1MB7 LINE L1 -13 6171 5852 2667 42 0 0 chr15 52242524 52242835 -49137686 - AluY SINE Alu 0 311 1 1640 156 44 88 chr15 52242835 52242906 -49137615 - L1MB7 LINE L1 -332 5852 5779 4426 230 83 38 chr15 52242923 52244401 -49136120 - L1MC4 LINE L1 -5 8037 6493 1313 157 157 43 chr15 52244941 52245126 -49135395 + MER46B DNA MER2_type 1 116 -2615 1912 115 18 11 chr15 52245126 52245425 -49135096 + AluSx SINE Alu 1 301 0 1313 157 157 43 chr15 52245425 52245562 -49134959 + MER46B DNA MER2_type 116 236 0 226 304 124 25 chr15 52245846 52246007 -49134514 - L1M4 LINE L1 -1905 4241 4065 1540 183 25 7 chr15 52246099 52246373 -49134148 + AluJb SINE Alu 1 279 -33 278 135 0 0 chr15 52246373 52246410 -49134111 + Alu SINE Alu 245 281 -21 1979 125 45 3 chr15 52246459 52246747 -49133774 - AluSq SINE Alu -13 300 1 443 286 88 36 chr15 52246769 52247077 -49133444 - L1M4 LINE L1 -2270 3876 3553 661 147 0 0 chr15 52247103 52247198 -49133323 + AluJ/FLAM SINE Alu 2 95 -217 3740 95 3 2 chr15 52247228 52247796 -49132725 + L1P LINE L1 3464 4032 -2114 1724 98 43 120 chr15 52247815 52248140 -49132381 - AluYb8 SINE Alu -18 300 1 4130 198 50 17 chr15 52248140 52248975 -49131546 - L1MA9 LINE L1 -433 5879 5073 1485 165 4 23 chr15 52248975 52249235 -49131286 - AluJo SINE Alu -9 303 49 4130 198 50 17 chr15 52249235 52249615 -49130906 - L1MA9 LINE L1 -1239 5073 4707 2256 90 3 0 chr15 52249615 52249904 -49130617 - AluY SINE Alu -20 291 2 4130 198 50 17 chr15 52249904 52250185 -49130336 - L1MA9 LINE L1 -1605 4707 4280 2207 130 0 10 chr15 52250377 52250685 -49129836 - AluSx SINE Alu -7 305 1 2239 116 0 0 chr15 52250693 52250996 -49129525 - AluSx SINE Alu -9 303 1 2195 178 44 14 chr15 52250996 52251433 -49129088 - L1MB8 LINE L1 -242 5936 5481 2002 157 0 7 chr15 52251433 52251733 -49128788 - AluSx SINE Alu -14 298 1 2195 178 44 14 chr15 52251733 52251794 -49128727 - L1MB8 LINE L1 -697 5481 5423 665 326 101 38 chr15 52251794 52252031 -49128490 - HAL1 LINE L1 -732 1775 1554 2404 101 0 0 chr15 52252031 52252337 -49128184 - AluSg SINE Alu -4 306 1 665 326 101 38 chr15 52252337 52252605 -49127916 - HAL1 LINE L1 -953 1554 1238 234 192 27 14 chr15 52252625 52252698 -49127823 - L1MEd LINE L1 -5041 1078 1005 285 210 93 86 chr15 52252881 52253043 -49127478 - L1MEd LINE L1 -5935 184 22 24 32 0 0 chr15 52253043 52253074 -49127447 + AT_rich Low_complexity Low_complexity 1 31 0 468 0 0 0 chr15 52254530 52254582 -49125939 + (TA)n Simple_repeat Simple_repeat 2 53 0 184 180 120 40 chr15 52254921 52254971 -49125550 - MIR SINE MIR -112 150 97 198 0 0 0 chr15 52255592 52255614 -49124907 + (T)n Simple_repeat Simple_repeat 1 22 0 256 279 221 12 chr15 52255662 52255834 -49124687 + MIR SINE MIR 43 250 -12 1867 199 72 27 chr15 52256703 52257186 -49123335 + MLT1D LTR MaLR 1 505 0 513 178 15 59 chr15 52262708 52262843 -49117678 - L1PA16 LINE L1 -2 6164 6036 2217 113 0 0 chr15 52262907 52263209 -49117312 + AluSg1 SINE Alu 1 302 -7 1963 93 67 8 chr15 52263211 52263520 -49117001 + AluY SINE Alu 1 325 0 2236 96 3 42 chr15 52264052 52264219 -49116302 - AluSp SINE Alu -12 301 150 2347 75 7 26 chr15 52264219 52264525 -49115996 - AluY SINE Alu -11 300 1 2236 96 3 42 chr15 52264525 52264670 -49115851 - AluSp SINE Alu -163 150 1 712 200 54 29 chr15 52264986 52265120 -49115401 - MER58C DNA MER1_type -2205 215 73 2275 94 7 0 chr15 52265120 52265418 -49115103 + AluSq SINE Alu 1 300 -13 712 200 54 29 chr15 52265418 52265488 -49115033 - MER58C DNA MER1_type -2347 73 6 22 0 0 0 chr15 52266749 52266771 -49113750 + AT_rich Low_complexity Low_complexity 1 22 0 1605 189 0 36 chr15 52267285 52267461 -49113060 - AluJo SINE Alu -13 299 137 2275 91 3 0 chr15 52267461 52267757 -49112764 - AluSx SINE Alu -15 297 1 1605 189 0 36 chr15 52267757 52267887 -49112634 - AluJo SINE Alu -175 137 4 2094 125 24 0 chr15 52267968 52268257 -49112264 + AluSx SINE Alu 1 296 -16 2245 95 0 46 chr15 52268296 52268622 -49111899 + AluY SINE Alu 1 311 0 26 0 0 0 chr15 52268999 52269025 -49111496 + AT_rich Low_complexity Low_complexity 1 26 0 2356 45 6 54 chr15 52269161 52269474 -49111047 - AluY SINE Alu -13 298 1 355 266 175 0 chr15 52269659 52269813 -49110708 - MER5A DNA MER1_type 0 189 9 231 127 111 0 chr15 52270930 52270993 -49109528 - L1ME4a LINE L1 -3 6118 6049 549 0 0 0 chr15 52271210 52271271 -49109250 + (TG)n Simple_repeat Simple_repeat 2 62 0 422 174 245 0 chr15 52271395 52271493 -49109028 - FLAM_A SINE Alu -11 122 1 2139 125 3 16 chr15 52271654 52271819 -49108702 - AluSx SINE Alu -13 299 138 2478 70 0 0 chr15 52271819 52272120 -49108401 - AluY SINE Alu -10 301 1 2139 125 3 16 chr15 52272120 52272257 -49108264 - AluSx SINE Alu -174 138 1 263 242 242 0 chr15 52273579 52273670 -49106851 + MIR SINE MIR 86 198 -64 1252 264 260 16 chr15 52273824 52274764 -49105757 + L2 LINE L2 2121 3312 -1 270 214 43 14 chr15 52274835 52274905 -49105616 + MER103 DNA DNA 90 161 -5 946 94 16 0 chr15 52275093 52275220 -49105301 - AluSc SINE Alu -60 249 121 2252 105 3 3 chr15 52275898 52276202 -49104319 - AluSq SINE Alu -9 304 1 2105 105 17 7 chr15 52276393 52276688 -49103833 + AluSx SINE Alu 1 298 -14 270 0 0 0 chr15 52276909 52276939 -49103582 + (TG)n Simple_repeat Simple_repeat 2 31 0 2158 123 0 0 chr15 52276939 52277224 -49103297 - AluSg SINE Alu -25 285 1 456 228 107 8 chr15 52277272 52277412 -49103109 + MLT1H LTR MaLR 413 549 0 403 114 0 43 chr15 52277866 52277936 -49102585 + AluSp SINE Alu 120 186 -127 333 314 55 68 chr15 52278242 52278462 -49102059 + L2 LINE L2 2444 2660 -654 2106 117 3 0 chr15 52278499 52278781 -49101740 - AluSq SINE Alu -30 283 1 285 235 147 0 chr15 52279376 52279478 -49101043 - L1ME LINE L1 -473 5648 5532 230 271 17 0 chr15 52279682 52279741 -49100780 + L3 LINE CR1 904 963 -614 295 338 51 0 chr15 52279868 52279977 -49100544 - MIR3 SINE MIR -43 165 51 324 0 0 0 chr15 52280790 52280826 -49099695 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 1191 203 30 38 chr15 52280831 52281068 -49099453 - AluJo SINE Alu -37 275 41 1471 147 18 139 chr15 52281857 52282252 -49098269 - MER7A DNA MER2_type 0 346 2 1629 68 5 40 chr15 52282562 52282784 -49097737 + AluSq SINE Alu 1 214 -99 2871 3 0 0 chr15 52283727 52284036 -49096485 + AluYb8 SINE Alu 1 309 -9 1951 121 71 3 chr15 52284167 52284449 -49096072 + AluSx SINE Alu 1 301 -11 1361 203 68 18 chr15 52284643 52284924 -49095597 + AluJo SINE Alu 5 299 -13 21 36 0 0 chr15 52284994 52285022 -49095499 + AT_rich Low_complexity Low_complexity 1 28 0 1787 172 34 0 chr15 52285261 52285552 -49094969 - AluJo SINE Alu -11 301 1 1466 183 95 4 chr15 52285693 52285967 -49094554 - AluJb SINE Alu -13 299 1 2616 24 3 0 chr15 52286982 52287279 -49093242 + AluY SINE Alu 1 298 -13 2003 140 0 22 chr15 52287826 52288140 -49092381 - AluSc SINE Alu -2 307 1 2484 63 0 0 chr15 52288151 52288450 -49092071 - AluY SINE Alu -12 299 1 1894 129 54 0 chr15 52288840 52289119 -49091402 + AluSq SINE Alu 1 294 -19 181 262 0 0 chr15 52289169 52289211 -49091310 - L2 LINE L2 -10 3303 3262 430 333 31 5 chr15 52289306 52289498 -49091023 + MIR SINE MIR 66 262 0 2209 99 26 0 chr15 52290645 52290947 -49089574 + AluSg SINE Alu 1 310 0 656 254 39 47 chr15 52291056 52291288 -49089233 + MIR SINE MIR 1 230 -32 1822 140 0 25 chr15 52291335 52291660 -49088861 + AluSx SINE Alu 5 322 0 197 333 83 47 chr15 52292131 52292323 -49088198 - L2 LINE L2 -338 2976 2778 1818 177 0 7 chr15 52292399 52292704 -49087817 + AluJo SINE Alu 1 303 -9 2328 90 0 3 chr15 52295180 52295480 -49085041 - AluSq SINE Alu -14 299 1 753 249 160 50 chr15 52297655 52298117 -49082404 - L1MC4 LINE L1 -94 7948 7436 2269 78 0 3 chr15 52298229 52298511 -49082010 - AluY SINE Alu -17 294 14 21 36 0 0 chr15 52299552 52299580 -49080941 + AT_rich Low_complexity Low_complexity 1 28 0 365 232 30 60 chr15 52299592 52299760 -49080761 - L1ME4a LINE L1 -34 6087 5925 274 167 0 0 chr15 52299839 52299881 -49080640 - 5S rRNA rRNA -79 42 1 250 248 53 68 chr15 52299882 52300015 -49080506 - L1ME4a LINE L1 -319 5802 5672 1937 126 3 17 chr15 52300036 52300330 -49080191 - AluSg SINE Alu -16 294 5 226 344 70 39 chr15 52301102 52301361 -49079160 + L2 LINE L2 2965 3231 -82 1927 112 43 0 chr15 52301362 52301640 -49078881 + AluSx SINE Alu 1 290 -22 279 0 0 0 chr15 52301646 52301677 -49078844 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 320 225 71 47 chr15 52301697 52301866 -49078655 - Charlie7 DNA MER1_type 0 2612 2440 256 289 70 51 chr15 52304623 52304779 -49075742 + L2 LINE L2 2245 2403 -911 329 292 247 6 chr15 52304853 52305031 -49075490 - MIR SINE MIR -10 252 32 1601 219 48 24 chr15 52305032 52305248 -49075273 - L1ME1 LINE L1 -68 6098 5889 2307 96 0 19 chr15 52305248 52305560 -49074961 - AluSq SINE Alu -7 306 1 1601 219 48 24 chr15 52305560 52305829 -49074692 - L1ME1 LINE L1 -277 5889 5676 2239 103 7 3 chr15 52305861 52306161 -49074360 - AluSq SINE Alu -12 301 1 22 0 0 0 chr15 52306174 52306196 -49074325 + AT_rich Low_complexity Low_complexity 1 22 0 1580 188 10 20 chr15 52306300 52306603 -49073918 - AluJb SINE Alu -11 301 2 2328 78 3 10 chr15 52306694 52307001 -49073520 + AluY SINE Alu 1 305 -6 354 230 92 0 chr15 52307045 52307132 -49073389 - MER5A DNA MER1_type -91 98 4 1997 132 0 30 chr15 52307261 52307557 -49072964 - AluSx SINE Alu -10 302 16 1286 173 0 26 chr15 52307596 52307766 -49072755 + MER58B DNA MER1_type 117 281 -2139 1219 234 34 52 chr15 52307766 52308147 -49072374 - MLT1A2 LTR MaLR 0 374 1 1286 173 0 26 chr15 52308147 52308207 -49072314 + MER58B DNA MER1_type 281 341 0 316 228 218 10 chr15 52308235 52308336 -49072185 + MER5A DNA MER1_type 61 182 -7 330 269 60 45 chr15 52308471 52308605 -49071916 - MIR SINE MIR 0 262 127 1727 154 13 13 chr15 52309520 52309818 -49070703 + AluJb SINE Alu 1 298 -14 22 35 0 0 chr15 52309828 52309857 -49070664 + AT_rich Low_complexity Low_complexity 1 29 0 311 354 27 14 chr15 52311361 52311508 -49069013 - L3 LINE CR1 -15 1562 1414 232 283 0 0 chr15 52311831 52311891 -49068630 + (TA)n Simple_repeat Simple_repeat 1 60 0 2176 86 7 4 chr15 52312335 52312614 -49067907 + AluSp SINE Alu 1 280 -33 408 20 0 0 chr15 52312614 52312663 -49067858 + (CA)n Simple_repeat Simple_repeat 1 49 0 2177 109 0 19 chr15 52313198 52313509 -49067012 - AluSx SINE Alu -7 305 1 22 0 0 0 chr15 52314512 52314534 -49065987 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr15 52314968 52315015 -49065506 + AT_rich Low_complexity Low_complexity 1 47 0 464 288 38 38 chr15 52315928 52316088 -49064433 + MIR SINE MIR 14 173 -89 25 31 0 0 chr15 52317012 52317044 -49063477 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr15 52319091 52319126 -49061395 + AT_rich Low_complexity Low_complexity 1 35 0 32 0 0 0 chr15 52319837 52319869 -49060652 + AT_rich Low_complexity Low_complexity 1 32 0 1470 179 32 54 chr15 52319941 52320254 -49060267 - AluJo SINE Alu -6 306 1 288 308 64 32 chr15 52320582 52320738 -49059783 - MIR3 SINE MIR 0 208 48 27 29 0 0 chr15 52322357 52322391 -49058130 + AT_rich Low_complexity Low_complexity 1 34 0 2491 147 7 9 chr15 52322432 52322880 -49057641 - L1MB8 LINE L1 0 6178 5732 30 27 0 0 chr15 52322914 52322951 -49057570 + AT_rich Low_complexity Low_complexity 1 37 0 731 250 93 31 chr15 52322952 52323340 -49057181 + HAL1b LINE L1 902 1313 -35 371 215 0 0 chr15 52323568 52323633 -49056888 - MER2 DNA MER2_type -1 344 280 909 130 19 0 chr15 52323664 52323818 -49056703 - MER2 DNA MER2_type -139 206 50 2025 125 7 0 chr15 52324253 52324571 -49055950 - AluSq SINE Alu 0 320 1 21 0 0 0 chr15 52326843 52326864 -49053657 + AT_rich Low_complexity Low_complexity 1 21 0 1144 194 182 11 chr15 52327179 52327530 -49052991 + Charlie1b DNA MER1_type 112 522 -1 349 392 69 27 chr15 52328414 52328746 -49051775 + L2 LINE L2 2830 3175 -97 188 299 105 62 chr15 52329633 52329957 -49050564 + L2 LINE L2 1542 1879 -1435 336 281 188 60 chr15 52329961 52330269 -49050252 + L2 LINE L2 2020 2287 -1027 2290 98 0 0 chr15 52330269 52330566 -49049955 + AluSc SINE Alu 8 304 -5 336 281 188 60 chr15 52330566 52330852 -49049669 + L2 LINE L2 2287 2690 -624 1159 44 25 13 chr15 52331195 52331354 -49049167 + L1PA6 LINE L1 5993 6153 -1 2357 78 0 3 chr15 52331354 52331650 -49048871 + AluY SINE Alu 1 295 -16 432 265 119 54 chr15 52331989 52332174 -49048347 - L2 LINE L2 0 3313 3117 1140 149 58 10 chr15 52332217 52332425 -49048096 + MER46A DNA MER2_type 17 234 -2 579 284 142 0 chr15 52332499 52332675 -49047846 - MIR SINE MIR -34 228 28 2136 92 46 3 chr15 52332734 52333017 -49047504 + AluSq SINE Alu 1 295 -18 2360 87 0 3 chr15 52333102 52333401 -49047120 + AluSc SINE Alu 1 298 -11 1154 182 4 30 chr15 52333534 52333765 -49046756 + AluJb SINE Alu 83 307 -5 23 54 0 0 chr15 52333820 52333857 -49046664 + AT_rich Low_complexity Low_complexity 1 37 0 2025 118 3 32 chr15 52334538 52334852 -49045669 - AluSx SINE Alu -7 305 1 2102 124 3 0 chr15 52334878 52335176 -49045345 + AluSp SINE Alu 1 299 -14 459 275 74 48 chr15 52335277 52335506 -49045015 + MIR SINE MIR 4 238 -24 26 30 0 0 chr15 52336220 52336253 -49044268 + AT_rich Low_complexity Low_complexity 1 33 0 1731 163 32 3 chr15 52337400 52337683 -49042838 + AluJb SINE Alu 1 291 -21 1472 196 50 7 chr15 52337696 52337976 -49042545 + AluJb SINE Alu 1 292 -20 393 300 55 9 chr15 52338973 52339083 -49041438 + L2 LINE L2 3153 3267 -5 1861 112 77 0 chr15 52339206 52339493 -49041028 - AluSx SINE Alu -3 309 1 281 294 154 7 chr15 52339494 52339637 -49040884 + MIR SINE MIR 96 259 -3 1823 164 0 0 chr15 52340013 52340294 -49040227 - AluJb SINE Alu -31 281 1 227 182 0 0 chr15 52340622 52340666 -49039855 + HY1 scRNA scRNA 67 110 -2 207 0 0 0 chr15 52340668 52340691 -49039830 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3370 205 39 62 chr15 52341637 52342203 -49038318 + L1ME1 LINE L1 4633 5211 -955 1581 189 17 0 chr15 52342203 52342499 -49038022 + AluJb SINE Alu 1 301 -11 3370 205 39 62 chr15 52342499 52342958 -49037563 + L1ME1 LINE L1 5211 5679 -487 2178 93 4 0 chr15 52342958 52343263 -49037258 + AluSg SINE Alu 1 306 0 3370 205 39 62 chr15 52343263 52343792 -49036729 + L1ME1 LINE L1 5679 6148 -18 180 152 0 0 chr15 52344491 52344524 -49035997 + (CA)n Simple_repeat Simple_repeat 2 34 0 289 316 140 15 chr15 52346515 52346651 -49033870 - MIR SINE MIR -57 205 53 1737 118 81 11 chr15 52346968 52347239 -49033282 - AluSx SINE Alu -20 292 3 2081 93 26 58 chr15 52347352 52347664 -49032857 - AluSg SINE Alu -8 302 1 1303 188 26 79 chr15 52347975 52348279 -49032242 + AluJo SINE Alu 1 288 -24 307 222 0 16 chr15 52348224 52348287 -49032234 + AluJ/monomer SINE Alu 237 298 -4 375 236 250 34 chr15 52348400 52348548 -49031973 + MER5A DNA MER1_type 9 188 -1 246 329 12 0 chr15 52348548 52348631 -49031890 - L2 LINE L2 -523 2791 2708 22 0 0 0 chr15 52348836 52348858 -49031663 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr15 52349653 52349682 -49030839 + (A)n Simple_repeat Simple_repeat 1 29 0 2250 95 0 3 chr15 52349831 52350125 -49030396 + AluSg SINE Alu 1 293 -17 2253 119 0 3 chr15 52350367 52350678 -49029843 + AluSx SINE Alu 1 310 -2 203 60 80 0 chr15 52350841 52350891 -49029630 + (TA)n Simple_repeat Simple_repeat 1 54 0 2044 209 86 39 chr15 52350932 52351516 -49029005 + L1ME1 LINE L1 5550 6160 -6 2172 115 0 47 chr15 52352403 52352725 -49027796 - AluSq SINE Alu -6 307 1 518 313 86 58 chr15 52352936 52353368 -49027153 + MLT1H LTR MaLR 106 549 0 660 306 122 14 chr15 52354703 52355490 -49025031 - L1ME3A LINE L1 -222 5948 5073 204 143 0 0 chr15 52355689 52355731 -49024790 + (TC)n Simple_repeat Simple_repeat 1 42 0 1541 179 0 21 chr15 52355742 52356027 -49024494 - AluJo SINE Alu -32 280 2 931 144 72 0 chr15 52357591 52357771 -49022750 + AluSg/x SINE Alu 133 323 0 234 194 42 42 chr15 52358298 52358370 -49022151 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 764 73 3 22 chr15 52359301 52359416 -49021105 + LTR7 LTR ERV1 253 448 -2 1531 83 0 5 chr15 52359419 52359624 -49020897 + HERVH LTR ERV1 2 205 -7508 * 2391 88 0 3 chr15 52359614 52359943 -49020578 + HERVH LTR ERV1 915 1242 -6471 1081 89 11 28 chr15 52359943 52360122 -49020399 + LTR7 LTR ERV1 239 414 -36 2137 127 0 7 chr15 52360242 52360542 -49019979 - AluSx SINE Alu -14 298 1 1971 120 11 11 chr15 52361274 52361587 -49018934 + AluSq SINE Alu 1 313 0 1700 104 104 19 chr15 52361594 52361854 -49018667 + AluSx SINE Alu 1 282 -30 236 75 0 25 chr15 52361857 52361897 -49018624 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1231 117 168 0 chr15 52362201 52362398 -49018123 + MER30 DNA MER1_type 1 230 0 531 377 77 2 chr15 52362398 52362852 -49017669 + L2 LINE L2 2246 2733 -581 2547 120 19 16 chr15 52363129 52363503 -49017018 - THE1C LTR MaLR 0 375 1 527 196 206 22 chr15 52363531 52363715 -49016806 + L1MC4 LINE L1 7825 8042 0 186 222 22 0 chr15 52363862 52363907 -49016614 + L2 LINE L2 3268 3313 0 187 344 54 0 chr15 52363944 52364037 -49016484 - L2 LINE L2 -2 3311 3214 377 279 61 0 chr15 52364687 52364834 -49015687 + L1MEd LINE L1 938 1093 -5279 1532 219 25 12 chr15 52364850 52365238 -49015283 + L1MEd LINE L1 1185 1535 -4849 2396 97 0 3 chr15 52365239 52365549 -49014972 - AluSg SINE Alu -1 309 1 1102 223 41 20 chr15 52365550 52365895 -49014626 - L1M4 LINE L1 -3372 2774 2423 * 1486 226 51 16 chr15 52365892 52365967 -49014554 + L1MEd LINE L1 1521 1592 -4792 1771 179 3 25 chr15 52365967 52366286 -49014235 + AluSx SINE Alu 1 312 0 1486 226 51 16 chr15 52366286 52366896 -49013625 + L1MEd LINE L1 1592 2325 -4059 1171 172 14 14 chr15 52366896 52367105 -49013416 + AluJb SINE Alu 87 295 -17 855 179 26 47 chr15 52367113 52367285 -49013236 + L1MEd LINE L1 2320 2475 -3907 1907 135 0 40 chr15 52367285 52367444 -49013077 - AluSx SINE Alu -27 285 142 2088 126 7 0 chr15 52367444 52367738 -49012783 - AluSc SINE Alu -13 296 1 1907 135 0 40 chr15 52367738 52367875 -49012646 - AluSx SINE Alu -170 142 1 855 179 26 47 chr15 52367875 52368023 -49012498 + L1MEd LINE L1 2475 2625 -3757 771 97 8 81 chr15 52368032 52368156 -49012365 + AluSp/q SINE Alu 185 299 -14 567 206 67 6 chr15 52368157 52368337 -49012184 + L1MEd LINE L1 3001 3191 -3191 837 146 0 22 chr15 52368337 52368474 -49012047 + AluSp/q SINE Alu 175 308 -5 4294 233 55 44 chr15 52368478 52369011 -49011510 + L1MEd LINE L1 3191 3716 -2666 2144 124 0 0 chr15 52369011 52369309 -49011212 + AluSx SINE Alu 1 298 -14 4294 233 55 44 chr15 52369309 52369364 -49011157 + L1MEd LINE L1 3716 3769 -2613 1953 147 13 3 chr15 52369364 52369663 -49010858 - AluSx SINE Alu -10 302 1 4294 233 55 44 chr15 52369663 52370569 -49009952 + L1MEd LINE L1 3769 4703 -1679 1871 168 88 8 chr15 52370608 52370983 -49009538 + L1MB7 LINE L1 5731 6135 -49 491 188 146 0 chr15 52370985 52371081 -49009440 + FLAM_A SINE Alu 2 111 -31 255 31 0 0 chr15 52371086 52371118 -49009403 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 2005 131 3 0 chr15 52371609 52371900 -49008621 - AluSq SINE Alu -21 292 1 2224 92 0 7 chr15 52372017 52372309 -49008212 + AluY SINE Alu 1 290 -21 258 313 0 12 chr15 52372334 52372417 -49008104 + MIR SINE MIR 64 145 -63 2317 112 0 0 chr15 52372862 52373167 -49007354 - AluSg SINE Alu -5 305 1 1965 160 47 21 chr15 52373344 52373682 -49006839 - MER7A DNA MER2_type 0 346 2 2150 124 13 0 chr15 52373685 52373983 -49006538 - AluSx SINE Alu -10 302 1 2375 87 3 0 chr15 52373992 52374292 -49006229 - AluSp SINE Alu -12 301 1 1252 112 6 6 chr15 52374428 52374598 -49005923 + AluSc SINE Alu 1 170 -139 1137 75 0 0 chr15 52374702 52374836 -49005685 + AluSc SINE Alu 152 285 -24 2238 113 3 13 chr15 52374847 52375158 -49005363 + AluSp SINE Alu 1 308 -5 1624 203 0 0 chr15 52375169 52375445 -49005076 + AluJo SINE Alu 3 278 -34 291 71 0 0 chr15 52375448 52375490 -49005031 + (CAA)n Simple_repeat Simple_repeat 1 42 0 882 203 130 5 chr15 52375621 52375813 -49004708 + MER20 DNA MER1_type 1 216 -3 25 51 0 0 chr15 52376205 52376244 -49004277 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr15 52377008 52377031 -49003490 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr15 52377340 52377365 -49003156 + (A)n Simple_repeat Simple_repeat 1 25 0 21 36 0 0 chr15 52378026 52378054 -49002467 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr15 52379601 52379628 -49000893 + (TC)n Simple_repeat Simple_repeat 2 28 0 216 0 0 0 chr15 52379627 52379651 -49000870 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 275 0 29 0 chr15 52379650 52379685 -49000836 + (CA)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr15 52379696 52379718 -49000803 + (TA)n Simple_repeat Simple_repeat 2 23 0 24 32 0 0 chr15 52379786 52379817 -49000704 + AT_rich Low_complexity Low_complexity 1 31 0 326 218 29 23 chr15 52380399 52380573 -48999948 + GA-rich Low_complexity Low_complexity 3 177 0 709 169 39 15 chr15 52380890 52381020 -48999501 - FLAM_A SINE Alu 0 133 1 21 0 0 0 chr15 52384069 52384090 -48996431 + GC_rich Low_complexity Low_complexity 1 21 0 1278 125 59 70 chr15 52385882 52386138 -48994383 + AluJo SINE Alu 6 258 -54 2171 107 20 0 chr15 52386859 52387157 -48993364 + AluSx SINE Alu 2 305 -7 336 262 97 0 chr15 52387258 52387361 -48993160 - MARNA DNA Mariner -206 380 268 225 86 0 0 chr15 52387813 52387848 -48992673 - L2 LINE L2 -5 3308 3274 2259 79 41 0 chr15 52387971 52388262 -48992259 + AluYa5 SINE Alu 1 303 -8 395 80 65 62 chr15 52388501 52388590 -48991931 + L1M3 LINE L1 5516 5607 -561 1972 146 0 10 chr15 52388590 52388892 -48991629 + AluSx SINE Alu 1 299 -13 744 233 0 0 chr15 52388900 52389033 -48991488 + FLAM_A SINE Alu 1 133 0 262 77 58 0 chr15 52389038 52389090 -48991431 + L1MB4 LINE L1 6125 6179 -1 1013 98 15 0 chr15 52389127 52389260 -48991261 + AluSq/x SINE Alu 1 135 -178 2336 72 7 3 chr15 52389260 52389566 -48990955 + AluY SINE Alu 2 308 -3 1287 171 14 110 chr15 52389576 52389922 -48990599 + AluSq SINE Alu 1 313 0 239 279 35 58 chr15 52389947 52390033 -48990488 + L3 LINE CR1 436 519 -1058 293 276 141 54 chr15 52390816 52391001 -48989520 + L3 LINE CR1 538 738 -839 2302 110 0 0 chr15 52391001 52391301 -48989220 + AluSx SINE Alu 1 300 -12 2215 127 0 3 chr15 52391707 52392014 -48988507 + AluSx SINE Alu 1 306 -6 1715 187 112 64 chr15 52392135 52392573 -48987948 - LTR40b LTR ERVL -3 459 1 200 370 80 6 chr15 52392576 52392738 -48987783 - L2 LINE L2 -228 3044 2871 2303 92 10 0 chr15 52392790 52393084 -48987437 - AluY SINE Alu -14 297 1 585 289 53 22 chr15 52393259 52393487 -48987034 - MIR SINE MIR -27 235 1 634 306 80 52 chr15 52393758 52394121 -48986400 + L3 LINE CR1 798 1170 -407 2327 153 9 68 chr15 52394128 52394482 -48986039 + MER47B DNA MER2_type 6 331 -1992 2017 135 20 3 chr15 52394482 52394778 -48985743 - AluSx SINE Alu -11 301 1 2327 153 9 68 chr15 52394778 52394862 -48985659 + MER47B DNA MER2_type 331 418 0 325 247 68 92 chr15 52394894 52394943 -48985578 - MIR SINE MIR -65 143 94 2006 105 11 18 chr15 52394943 52395276 -48985245 + AluSx SINE Alu 1 331 0 325 247 68 92 chr15 52395276 52395353 -48985168 - MIR SINE MIR -114 94 16 2286 101 3 3 chr15 52395797 52396103 -48984418 + AluSq SINE Alu 1 306 -7 198 206 0 0 chr15 52396400 52396434 -48984087 + L2 LINE L2 3210 3243 -29 2392 78 0 13 chr15 52397647 52397954 -48982567 - AluY SINE Alu -8 303 1 2011 108 42 3 chr15 52397955 52398242 -48982279 - AluSx SINE Alu -14 298 1 428 106 12 0 chr15 52398901 52398986 -48981535 + (TA)n Simple_repeat Simple_repeat 2 87 0 2087 98 7 7 chr15 52398986 52399273 -48981248 - AluSq SINE Alu -26 287 1 2210 96 0 37 chr15 52399308 52399630 -48980891 + AluY SINE Alu 1 310 -1 1198 127 0 6 chr15 52399637 52399818 -48980703 + AluSg/x SINE Alu 118 297 -13 2202 78 3 7 chr15 52399818 52400111 -48980410 + AluY SINE Alu 1 292 -19 2573 101 2 55 chr15 52400129 52400527 -48979994 + MER48 LTR ERV1 8 384 -3 2007 97 0 53 chr15 52400593 52400912 -48979609 - AluSc SINE Alu -7 302 1 1546 256 81 16 chr15 52401170 52401677 -48978844 - HAL1 LINE L1 -607 1900 1361 1456 177 27 24 chr15 52401705 52401999 -48978522 - AluJo SINE Alu -17 295 1 23 0 0 0 chr15 52402244 52402267 -48978254 + AT_rich Low_complexity Low_complexity 1 23 0 2255 78 3 19 chr15 52402370 52402678 -48977843 + AluY SINE Alu 3 305 -6 2058 116 3 16 chr15 52402689 52402999 -48977522 - AluSq SINE Alu -7 306 1 216 0 0 0 chr15 52403188 52403212 -48977309 + (CA)n Simple_repeat Simple_repeat 1 24 0 2029 127 0 13 chr15 52403692 52404008 -48976513 + AluSx SINE Alu 1 312 0 1094 116 83 6 chr15 52404147 52404328 -48976193 - AluSg/x SINE Alu -6 304 110 1984 132 0 3 chr15 52404397 52404693 -48975828 + AluSx SINE Alu 1 295 -17 2020 102 7 10 chr15 52404698 52404991 -48975530 + AluSc SINE Alu 3 294 -15 810 248 5 59 chr15 52405007 52405117 -48975404 + MIR SINE MIR 42 136 -126 2106 115 0 0 chr15 52405117 52405413 -48975108 + AluSc SINE Alu 1 296 -13 810 248 5 59 chr15 52405413 52405524 -48974997 + MIR SINE MIR 136 251 -11 287 213 184 64 chr15 52405996 52406137 -48974384 - MLT1J1 LTR MaLR 0 446 289 * 655 242 31 0 chr15 52406135 52406296 -48974225 - MLT1J2 LTR MaLR -247 203 38 1924 151 3 0 chr15 52406298 52406603 -48973918 + AluSq SINE Alu 1 306 -7 1062 153 11 0 chr15 52406603 52406780 -48973741 + AluSg/x SINE Alu 134 312 0 364 227 0 0 chr15 52407066 52407132 -48973389 - Tigger7 DNA MER2_type -520 213 148 687 123 0 0 chr15 52407132 52407238 -48973283 - AluSx SINE Alu -15 295 190 * 776 103 0 0 chr15 52407235 52407342 -48973179 - AluSx SINE Alu -206 107 1 402 147 53 27 chr15 52407342 52407408 -48973113 - Tigger7 DNA MER2_type -2331 156 86 1900 118 14 0 chr15 52407408 52407705 -48972816 - AluSx SINE Alu -11 301 1 1017 201 78 78 chr15 52407707 52408026 -48972495 - MLT1D LTR MaLR -186 319 1 1667 233 95 7 chr15 52408026 52408446 -48972075 - MLT1F LTR MaLR -85 457 1 242 213 49 16 chr15 52408830 52408891 -48971630 + MER41A LTR ERV1 400 462 -92 2199 110 0 0 chr15 52409025 52409325 -48971196 - AluSx SINE Alu -12 300 1 930 132 15 56 chr15 52409325 52409522 -48970999 - AluSp SINE Alu -11 302 114 1900 156 0 0 chr15 52409548 52409849 -48970672 - AluSx SINE Alu -9 303 3 2093 110 0 3 chr15 52410713 52411013 -48969508 + AluSx SINE Alu 1 299 -13 810 184 7 26 chr15 52411081 52411233 -48969288 - FAM SINE Alu -36 149 1 1126 93 0 13 chr15 52411492 52411643 -48968878 + AluSq/x SINE Alu 1 149 -163 391 83 0 0 chr15 52411643 52411691 -48968830 + AluY SINE Alu 202 249 -52 1112 156 18 36 chr15 52411691 52411915 -48968606 + AluSq SINE Alu 85 304 -9 221 309 9 142 chr15 52412867 52413197 -48967324 - L2 LINE L2 -70 3202 2917 2392 67 0 6 chr15 52413204 52413516 -48967005 + AluY SINE Alu 1 310 -1 1236 171 146 25 chr15 52413598 52413664 -48966857 + AluJb SINE Alu 1 58 -254 2208 103 3 0 chr15 52413664 52413966 -48966555 + AluSp SINE Alu 1 303 -10 1236 171 146 25 chr15 52413966 52414174 -48966347 + AluJb SINE Alu 58 308 -4 2311 88 0 3 chr15 52414295 52414603 -48965918 + AluY SINE Alu 1 307 -4 1466 204 6 29 chr15 52414970 52415284 -48965237 + AluJo SINE Alu 6 312 0 190 309 104 55 chr15 52415402 52415622 -48964899 + L2 LINE L2 2926 3156 -116 1964 117 3 0 chr15 52416183 52416465 -48964056 + AluSx SINE Alu 23 305 -7 913 248 4 32 chr15 52416561 52416839 -48963682 - L1MD3 LINE L1 -12 7983 7714 357 323 86 45 chr15 52416964 52417184 -48963337 - L1M4 LINE L1 -1312 4834 4606 1865 179 3 0 chr15 52417186 52417493 -48963028 + AluSx SINE Alu 1 308 -4 443 270 237 50 chr15 52418030 52418393 -48962128 + L2 LINE L2 2840 3270 -2 1898 128 0 4 chr15 52418526 52418807 -48961714 - AluSg SINE Alu -30 280 1 2051 127 0 10 chr15 52418809 52419116 -48961405 - AluSx SINE Alu -8 304 1 552 257 44 7 chr15 52419116 52419252 -48961269 - MIR SINE MIR -37 225 85 299 337 10 0 chr15 52419331 52419432 -48961089 + MIR3 SINE MIR 92 193 -15 811 183 0 0 chr15 52419530 52419667 -48960854 + FRAM SINE Alu 1 136 -40 432 130 0 0 chr15 52419673 52419742 -48960779 + (GA)n Simple_repeat Simple_repeat 1 69 0 342 70 21 4 chr15 52420503 52420562 -48959959 - Alu SINE Alu -256 46 1 557 219 41 41 chr15 52420564 52420580 -48959941 - MIR SINE MIR -98 164 149 2650 164 20 4 chr15 52420580 52420855 -48959666 - MLT1C LTR MaLR 0 467 181 2379 52 10 16 chr15 52420855 52421160 -48959361 - AluY SINE Alu -8 303 1 2650 164 20 4 chr15 52421160 52421341 -48959180 - MLT1C LTR MaLR -286 181 4 557 219 41 41 chr15 52421341 52421470 -48959051 - MIR SINE MIR -112 150 19 237 297 135 8 chr15 52421804 52421961 -48958560 - MIR SINE MIR -62 146 16 194 347 14 0 chr15 52422720 52422792 -48957729 - L2 LINE L2 -1537 1777 1705 481 297 88 17 chr15 52423059 52423298 -48957223 + MIR SINE MIR 5 260 -2 468 0 0 0 chr15 52423637 52423689 -48956832 + (CA)n Simple_repeat Simple_repeat 2 53 0 2096 117 10 3 chr15 52424990 52425299 -48955222 + AluSx SINE Alu 1 311 -1 567 230 96 28 chr15 52425782 52425960 -48954561 - MIR SINE MIR 0 262 73 830 143 0 48 chr15 52425977 52426124 -48954397 + AluJb SINE Alu 11 150 -162 2041 103 0 0 chr15 52426683 52426964 -48953557 + AluSx SINE Alu 1 281 -31 1493 135 17 76 chr15 52427337 52427460 -48953061 + AluJb SINE Alu 7 136 -176 2020 100 25 0 chr15 52427460 52427740 -48952781 + AluSg SINE Alu 1 287 -23 1493 135 17 76 chr15 52427740 52427905 -48952616 + AluJb SINE Alu 136 278 -34 1187 162 0 5 chr15 52428019 52428241 -48952280 + AluJb SINE Alu 86 306 0 2142 107 125 41 chr15 52429355 52429747 -48950774 + MSTA LTR MaLR 3 427 -1 378 292 0 54 chr15 52429879 52429899 -48950622 - L2 LINE L2 -8 3305 3285 1362 218 78 48 chr15 52429899 52429939 -48950582 - MLT2D LTR ERVL 0 414 377 267 103 0 0 chr15 52429939 52429978 -48950543 + (CA)n Simple_repeat Simple_repeat 1 39 0 1362 218 78 48 chr15 52429978 52430249 -48950272 - MLT2D LTR ERVL -37 377 86 2387 71 0 0 chr15 52430249 52430560 -48949961 + AluY SINE Alu 1 311 0 1362 218 78 48 chr15 52430560 52430647 -48949874 - MLT2D LTR ERVL -328 86 3 378 292 0 54 chr15 52430647 52430756 -48949765 - L2 LINE L2 -28 3285 3183 190 231 55 121 chr15 52430971 52431062 -48949459 - MIR SINE MIR -55 153 69 1713 186 23 32 chr15 52431193 52431537 -48948984 - MLT1A1 LTR MaLR -24 341 1 237 211 40 79 chr15 52432573 52432649 -48947872 - MIR SINE MIR -3 259 187 453 273 0 0 chr15 52432655 52432754 -48947767 + L2 LINE L2 3202 3300 -13 1690 159 44 14 chr15 52432780 52433076 -48947445 - AluJo SINE Alu -7 305 1 2239 139 31 19 chr15 52433120 52433480 -48947041 + THE1B LTR MaLR 1 364 0 2276 68 3 0 chr15 52433480 52433772 -48946749 + THE1B-int LTR MaLR 1 293 -1287 * 4193 111 0 0 chr15 52433769 52434329 -48946192 + THE1B-int LTR MaLR 668 1227 -353 514 226 40 32 chr15 52435562 52435686 -48944835 - L2 LINE L2 -2 3311 3187 207 0 0 0 chr15 52435761 52435784 -48944737 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1461 137 17 0 chr15 52435798 52436031 -48944490 + AluSq SINE Alu 72 308 -5 305 287 274 6 chr15 52436158 52436322 -48944199 - MIR SINE MIR -34 228 21 2020 137 0 0 chr15 52436882 52437174 -48943347 - AluSx SINE Alu -20 292 1 253 213 46 9 chr15 52438424 52438532 -48941989 + CT-rich Low_complexity Low_complexity 1 112 0 226 258 79 34 chr15 52439277 52439366 -48941155 - MIR3 SINE MIR -15 193 101 447 233 227 6 chr15 52439396 52439559 -48940962 - MIR SINE MIR 0 262 64 237 65 0 0 chr15 52439966 52439997 -48940524 + (CA)n Simple_repeat Simple_repeat 1 31 0 2306 70 3 3 chr15 52440003 52440304 -48940217 - AluY SINE Alu -10 301 1 273 139 0 0 chr15 52440317 52440360 -48940161 - tRNA-Cys-TGC tRNA tRNA -32 43 1 2073 100 28 0 chr15 52440369 52440659 -48939862 - AluY SINE Alu -13 298 1 290 344 187 8 chr15 52440680 52440921 -48939600 - L3 LINE CR1 -116 1461 1178 230 274 0 16 chr15 52441243 52441305 -48939216 + MIR3 SINE MIR 130 190 -18 1828 150 0 10 chr15 52443020 52443313 -48937208 - AluJb SINE Alu -17 295 6 1031 147 0 0 chr15 52443325 52443488 -48937033 - AluSg/x SINE Alu -13 297 135 522 258 116 21 chr15 52443508 52443807 -48936714 + HAL1 LINE L1 816 1150 -1357 189 74 0 0 chr15 52443807 52443834 -48936687 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 522 258 116 21 chr15 52443834 52443863 -48936658 + HAL1 LINE L1 1150 1175 -1332 1351 138 0 0 chr15 52443865 52444061 -48936460 + AluSx SINE Alu 1 196 -116 1226 267 140 32 chr15 52444091 52444706 -48935815 + HAL1 LINE L1 1237 1917 -590 2018 117 3 0 chr15 52444853 52445160 -48935361 + AluSq SINE Alu 1 308 0 17254 46 1 1 chr15 52445176 52447913 -48932608 + L1PA5 LINE L1 3266 6003 -151 1215 28 0 0 chr15 52448025 52448167 -48932354 + L1PA5 LINE L1 6002 6143 -11 234 0 0 0 chr15 52448174 52448200 -48932321 + (CAA)n Simple_repeat Simple_repeat 2 27 0 332 239 33 22 chr15 52448325 52448417 -48932104 + HAL1b LINE L1 746 838 -510 1680 153 0 0 chr15 52448535 52448790 -48931731 + AluSq SINE Alu 1 255 -58 321 115 0 0 chr15 52448890 52448942 -48931579 + AluSq SINE Alu 250 301 0 267 152 61 0 chr15 52449024 52449090 -48931431 + HAL1 LINE L1 2245 2314 -193 2080 128 3 0 chr15 52449096 52449400 -48931121 + AluSx SINE Alu 1 305 -7 2619 203 92 30 chr15 52449497 52450232 -48930289 - L1MC4a LINE L1 0 7808 7028 730 170 14 41 chr15 52450253 52450400 -48930121 - FRAM SINE Alu -11 165 23 1610 173 23 3 chr15 52450402 52450703 -48929818 - L1MD3 LINE L1 -932 7063 6757 336 48 0 0 chr15 52450704 52450746 -48929775 + (TATG)n Simple_repeat Simple_repeat 2 43 0 1350 228 131 3 chr15 52450749 52451131 -48929390 - L1MC4a LINE L1 -1203 6605 6175 1355 154 3 89 chr15 52451131 52451424 -48929097 - AluJb SINE Alu -17 295 28 1187 148 0 0 chr15 52451433 52451609 -48928912 - MLT1C LTR MaLR -291 176 1 228 136 23 0 chr15 52451619 52451663 -48928858 - L1MC4a LINE L1 -1797 6011 5967 960 168 18 0 chr15 52451669 52451836 -48928685 - MER6 DNA MER2_type 0 865 696 725 143 0 0 chr15 52451945 52452073 -48928448 + AluSp/q SINE Alu 188 315 0 2277 68 0 23 chr15 52452081 52452388 -48928133 - AluY SINE Alu -11 300 1 3672 167 49 13 chr15 52452392 52452470 -48928051 - MER6 DNA MER2_type -171 694 620 1730 154 28 21 chr15 52452470 52452755 -48927766 + AluJo SINE Alu 5 291 -21 3672 167 49 13 chr15 52452755 52453346 -48927175 - MER6 DNA MER2_type -245 620 1 442 200 32 16 chr15 52453346 52453471 -48927050 - L1MC4a LINE L1 -1850 5958 5832 1890 97 0 8 chr15 52453475 52453722 -48926799 - AluSp SINE Alu -12 301 57 1648 198 113 31 chr15 52453851 52454330 -48926191 - L1MC4a LINE L1 -1980 5828 5311 2045 168 67 7 chr15 52454334 52454740 -48925781 - L1MB8 LINE L1 -31 6147 5718 342 287 86 77 chr15 52454830 52455051 -48925470 - L1MC4a LINE L1 -1312 4834 4607 2341 106 3 0 chr15 52455051 52455363 -48925158 + AluSp SINE Alu 1 313 0 342 287 86 77 chr15 52455363 52455479 -48925042 - L1MC4a LINE L1 -1539 4607 4494 2267 71 7 0 chr15 52456996 52457323 -48923198 + AluY SINE Alu 1 329 0 180 363 117 24 chr15 52459233 52459481 -48921040 + L2 LINE L2 2538 2808 -506 743 177 0 57 chr15 52459854 52459995 -48920526 - FLAM_A SINE Alu 0 133 1 21 0 0 0 chr15 52460409 52460430 -48920091 + AT_rich Low_complexity Low_complexity 1 21 0 2182 107 3 26 chr15 52460585 52460893 -48919628 + AluSx SINE Alu 1 301 -11 236 139 0 0 chr15 52461024 52461067 -48919454 - L1P LINE L1 -758 5396 5354 4579 85 33 0 chr15 52461068 52461671 -48918850 - L1PA11 LINE L1 -1 6173 5551 1559 159 71 29 chr15 52461886 52462052 -48918469 + MER33 DNA MER1_type 3 161 -2424 2193 101 3 3 chr15 52462052 52462340 -48918181 - AluSq SINE Alu -22 291 4 1559 159 71 29 chr15 52462340 52462482 -48918039 + MER33 DNA MER1_type 161 324 0 585 124 0 0 chr15 52464015 52464104 -48916417 - AluSp/q SINE Alu -5 308 220 893 184 149 10 chr15 52464204 52464405 -48916116 + MLT1E2 LTR MaLR 398 626 0 306 283 268 0 chr15 52464465 52464603 -48915918 + MIR SINE MIR 74 248 -14 22 0 0 0 chr15 52466818 52466840 -48913681 + AT_rich Low_complexity Low_complexity 1 22 0 360 241 43 34 chr15 52467034 52467172 -48913349 - MIR SINE MIR -61 147 32 316 304 36 18 chr15 52467654 52467766 -48912755 + L2 LINE L2 3156 3269 -3 1380 165 0 28 chr15 52469791 52470040 -48910481 - AluJo SINE Alu -11 301 60 1867 147 0 4 chr15 52470040 52470312 -48910209 - AluSx SINE Alu -41 271 1 442 171 248 16 chr15 52471294 52471423 -48909098 - MER103 DNA DNA -2 164 6 2057 128 3 3 chr15 52471511 52471807 -48908714 - AluSx SINE Alu -16 296 1 2000 111 0 11 chr15 52472399 52472670 -48907851 + AluSx SINE Alu 21 288 -24 1183 149 11 5 chr15 52473514 52473702 -48906819 + AluJb SINE Alu 1 189 -123 207 0 0 0 chr15 52474077 52474100 -48906421 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 418 360 49 17 chr15 52474110 52474457 -48906064 + L2 LINE L2 1752 2109 -1205 413 306 106 73 chr15 52474710 52475150 -48905371 + L2 LINE L2 2560 3009 -263 378 0 0 0 chr15 52475335 52475377 -48905144 + (CA)n Simple_repeat Simple_repeat 2 43 0 1659 166 3 37 chr15 52475377 52475537 -48904984 - AluJo SINE Alu -26 286 139 2115 117 0 7 chr15 52475537 52475827 -48904694 - AluSx SINE Alu -20 292 5 1659 166 3 37 chr15 52475827 52475962 -48904559 - AluJo SINE Alu -173 139 1 2242 107 0 10 chr15 52476151 52476459 -48904062 + AluSx SINE Alu 1 305 -7 23 33 0 0 chr15 52476643 52476673 -48903848 + AT_rich Low_complexity Low_complexity 1 30 0 2131 125 0 13 chr15 52478018 52478331 -48902190 - AluJb SINE Alu -2 310 2 2297 109 3 0 chr15 52478699 52479003 -48901518 + AluSc SINE Alu 1 305 -4 387 0 0 0 chr15 52479003 52479046 -48901475 + (TA)n Simple_repeat Simple_repeat 1 43 0 335 285 72 53 chr15 52479106 52479313 -48901208 + L1MC4 LINE L1 7831 8041 -1 2342 142 46 24 chr15 52479880 52479935 -48900586 + L1MB3 LINE L1 5722 5774 -409 2177 120 7 0 chr15 52479935 52480235 -48900286 - AluSg SINE Alu -8 302 1 2342 142 46 24 chr15 52480235 52480595 -48899926 + L1MB3 LINE L1 5774 6146 -37 2254 54 43 0 chr15 52480596 52480874 -48899647 - AluY SINE Alu -21 290 1 1626 163 58 0 chr15 52481404 52481681 -48898840 - AluJo SINE Alu -19 293 1 2323 138 48 20 chr15 52481905 52482259 -48898262 + THE1B LTR MaLR 1 364 0 322 216 32 21 chr15 52482288 52482424 -48898097 - MIR SINE MIR -66 196 2 212 204 18 142 chr15 52482821 52482934 -48897587 - L2 LINE L2 -15 3298 3200 644 262 91 19 chr15 52483506 52483716 -48896805 + MIR SINE MIR 12 236 -26 1017 203 6 0 chr15 52483811 52483993 -48896528 - AluJo SINE Alu -12 300 118 231 165 134 41 chr15 52484165 52484262 -48896259 - L1MEd LINE L1 -5024 1095 990 835 274 85 0 chr15 52484290 52484513 -48896008 + MIR SINE MIR 10 251 -11 2276 99 26 3 chr15 52484787 52485090 -48895431 - AluSx SINE Alu -2 310 1 2203 116 0 10 chr15 52486668 52486970 -48893551 - AluSx SINE Alu 0 312 14 2042 120 0 0 chr15 52488175 52488451 -48892070 - AluSp SINE Alu -13 300 25 204 195 65 0 chr15 52488605 52488682 -48891839 + (TTTAA)n Simple_repeat Simple_repeat 1 82 0 25 0 0 0 chr15 52488694 52488719 -48891802 + AT_rich Low_complexity Low_complexity 1 25 0 2335 75 3 23 chr15 52488742 52489048 -48891473 - AluY SINE Alu -11 300 1 193 212 59 47 chr15 52489098 52489183 -48891338 + MIR SINE MIR 127 212 -50 373 268 84 78 chr15 52489991 52490170 -48890351 - LTR67 LTR ERVL -376 181 2 272 267 96 37 chr15 52490176 52490311 -48890210 + L1ME LINE L1 5762 5904 -280 278 125 0 0 chr15 52490335 52490375 -48890146 - LTR54 LTR ERV1 -68 442 403 2449 88 0 0 chr15 52490421 52490727 -48889794 - AluSp SINE Alu -7 306 1 2269 112 3 0 chr15 52490964 52491269 -48889252 + AluSq SINE Alu 1 306 -7 483 165 165 0 chr15 52491526 52491641 -48888880 - L1ME1 LINE L1 -105 6061 5928 306 0 0 0 chr15 52491641 52491675 -48888846 + (TA)n Simple_repeat Simple_repeat 2 35 0 222 62 0 0 chr15 52491686 52491718 -48888803 + (GA)n Simple_repeat Simple_repeat 1 32 0 2054 131 0 3 chr15 52491718 52492001 -48888520 - AluSx SINE Alu -30 282 1 255 260 63 39 chr15 52492275 52492402 -48888119 - MIR SINE MIR -37 225 96 286 31 0 0 chr15 52492403 52492435 -48888086 - U2 snRNA snRNA -150 38 7 294 338 26 2 chr15 52492441 52492537 -48887984 - MIR SINE MIR -101 107 10 1977 135 7 7 chr15 52492657 52492953 -48887568 + AluSq SINE Alu 1 296 -17 1012 97 35 14 chr15 52492953 52493097 -48887424 + AluSg/x SINE Alu 134 280 -32 1324 246 101 8 chr15 52493334 52493721 -48886800 + L1ME1 LINE L1 5739 6161 -5 217 333 20 29 chr15 52495455 52495557 -48884964 + L2 LINE L2 2584 2684 -630 184 336 49 35 chr15 52495659 52495802 -48884719 + L2 LINE L2 2825 2969 -303 457 248 79 82 chr15 52495827 52496120 -48884401 + L1ME4a LINE L1 5658 5957 -164 2082 138 20 0 chr15 52496269 52496573 -48883948 - AluSx SINE Alu -2 310 1 22 0 0 0 chr15 52496633 52496655 -48883866 + AT_rich Low_complexity Low_complexity 1 22 0 1150 179 5 27 chr15 52496678 52496902 -48883619 + AluJo SINE Alu 76 294 -18 399 281 26 39 chr15 52497023 52497176 -48883345 - L1MC4a LINE L1 -1882 5926 5776 1993 139 13 13 chr15 52497255 52497557 -48882964 - AluSx SINE Alu -10 302 1 808 250 61 5 chr15 52497739 52497951 -48882570 - MER58A DNA MER1_type 0 224 1 490 244 0 53 chr15 52497951 52498082 -48882439 + L2 LINE L2 3189 3312 -1 1934 128 14 11 chr15 52498362 52498671 -48881850 + AluSx SINE Alu 1 310 0 338 172 17 0 chr15 52498690 52498748 -48881773 + MER90 LTR ERV1 1 59 -516 * 2210 169 90 0 chr15 52498747 52499149 -48881372 + MER90 LTR ERV1 177 614 0 285 258 34 11 chr15 52499951 52500040 -48880481 + L2 LINE L2 3223 3313 0 1888 109 11 0 chr15 52500368 52500642 -48879879 + L1MA2 LINE L1 6028 6304 0 21 0 0 0 chr15 52500741 52500762 -48879759 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr15 52501461 52501496 -48879025 + AT_rich Low_complexity Low_complexity 1 35 0 707 123 39 32 chr15 52502379 52502533 -48877988 + L1MA7 LINE L1 6137 6291 0 465 322 54 24 chr15 52503177 52503350 -48877171 + L1M4 LINE L1 4456 4622 -1524 2325 95 3 3 chr15 52503350 52503654 -48876867 + AluSp SINE Alu 1 304 -9 465 322 54 24 chr15 52503654 52503850 -48876671 + L1M4 LINE L1 4622 4836 -1310 2356 102 0 0 chr15 52503866 52504169 -48876352 + AluSx SINE Alu 1 303 -9 305 324 50 41 chr15 52504236 52504455 -48876066 + L1M4 LINE L1 4924 5144 -1002 247 242 16 81 chr15 52504879 52504903 -48875618 + CT-rich Low_complexity Low_complexity 3 27 -149 1587 165 69 0 chr15 52504903 52505164 -48875357 - AluJo SINE Alu -33 279 1 247 242 16 81 chr15 52505164 52505325 -48875196 + CT-rich Low_complexity Low_complexity 27 176 0 2112 137 0 0 chr15 52506724 52507023 -48873498 + AluSx SINE Alu 1 299 -13 2401 131 8 14 chr15 52507323 52507689 -48872832 + THE1B LTR MaLR 1 364 0 348 309 86 37 chr15 52507776 52507938 -48872583 - MIR3 SINE MIR -9 199 30 21 82 0 0 chr15 52508475 52508524 -48871997 + AT_rich Low_complexity Low_complexity 1 49 0 291 28 0 0 chr15 52508809 52508845 -48871676 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 1819 167 0 3 chr15 52509474 52509762 -48870759 - AluJb SINE Alu -2 310 24 235 196 36 0 chr15 52511151 52511207 -48869314 + L1ME4a LINE L1 6059 6116 -5 225 0 0 0 chr15 52511225 52511250 -48869271 + (TAA)n Simple_repeat Simple_repeat 2 26 0 23 54 0 0 chr15 52511323 52511360 -48869161 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr15 52512834 52512874 -48867647 + AT_rich Low_complexity Low_complexity 1 40 0 1994 257 75 52 chr15 52513114 52513644 -48866877 + L1MD3 LINE L1 11 527 -5734 2150 126 3 0 chr15 52513644 52513945 -48866576 + AluSx SINE Alu 3 304 -8 1994 257 75 52 chr15 52513945 52514252 -48866269 + L1MD3 LINE L1 527 825 -5436 1930 134 0 28 chr15 52514252 52514568 -48865953 - AluSx SINE Alu 0 308 1 1994 257 75 52 chr15 52514568 52515496 -48865025 + L1MD3 LINE L1 825 1875 -4386 352 272 89 0 chr15 52515528 52515757 -48864764 + L1MD3 LINE L1 1921 2176 -3904 23 54 0 0 chr15 52515770 52515807 -48864714 + AT_rich Low_complexity Low_complexity 1 37 0 806 163 0 15 chr15 52515820 52515955 -48864566 - FLAM_C SINE Alu 0 133 1 4424 206 70 24 chr15 52515958 52517050 -48863471 - L1MC4a LINE L1 0 7808 6667 509 263 67 0 chr15 52517059 52517238 -48863283 + L1MD3 LINE L1 2168 2358 -3722 * 1075 227 100 19 chr15 52517223 52517762 -48862759 + L1MD3 LINE L1 5182 5411 -687 2100 128 3 6 chr15 52517762 52518074 -48862447 - AluSq SINE Alu -2 311 1 1075 227 100 19 chr15 52518074 52518138 -48862383 + L1MD3 LINE L1 5411 5468 -630 1652 295 119 26 chr15 52518158 52518958 -48861563 + HAL1 LINE L1 489 1412 -1095 2110 125 0 13 chr15 52518958 52519261 -48861260 + AluSg SINE Alu 1 299 -11 1652 295 119 26 chr15 52519261 52519520 -48861001 + HAL1 LINE L1 1412 1646 -861 743 239 115 0 chr15 52519526 52519735 -48860786 + HAL1 LINE L1 1683 1915 -592 338 289 79 0 chr15 52519736 52519850 -48860671 + MIR SINE MIR 139 261 -1 2297 106 3 0 chr15 52520080 52520391 -48860130 - AluSq SINE Alu -1 312 1 180 0 0 0 chr15 52520585 52520605 -48859916 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 1155 183 18 18 chr15 52520752 52520971 -48859550 - MER20 DNA MER1_type 0 219 1 21607 149 44 17 chr15 52521058 52522629 -48857892 + L1MA3 LINE L1 16 1542 -6023 408 20 0 0 chr15 52522629 52522678 -48857843 + (CA)n Simple_repeat Simple_repeat 2 50 0 21607 149 44 17 chr15 52522678 52522830 -48857691 + L1MA3 LINE L1 1542 1688 -5877 2297 114 0 0 chr15 52522830 52523128 -48857393 - AluSx SINE Alu -12 300 3 21607 149 44 17 chr15 52523128 52525435 -48855086 + L1MA3 LINE L1 1688 3930 -3635 2127 79 28 7 chr15 52525435 52525725 -48854796 + AluSc SINE Alu 1 296 -13 21607 149 44 17 chr15 52525725 52528134 -48852387 + L1MA3 LINE L1 3930 6645 -920 4252 97 36 33 chr15 52528134 52528638 -48851883 + L1MA3 LINE L1 7021 7536 -188 1964 136 0 7 chr15 52528638 52528948 -48851573 - AluSx SINE Alu 0 313 6 4252 97 36 33 chr15 52528948 52529138 -48851383 + L1MA3 LINE L1 7536 7724 0 2883 166 75 9 chr15 52529145 52529871 -48850650 - L1MB8 LINE L1 -9 6169 5373 1942 127 3 3 chr15 52530934 52531280 -48849241 + AluSq SINE Alu 1 346 0 22 35 0 0 chr15 52531521 52531550 -48848971 + AT_rich Low_complexity Low_complexity 1 29 0 347 324 29 12 chr15 52531697 52531867 -48848654 - L1MC4a LINE L1 -1911 5897 5725 225 253 67 0 chr15 52531882 52531957 -48848564 - L1MC4a LINE L1 -2064 5744 5665 1099 171 35 5 chr15 52533224 52533423 -48847098 - MER2 DNA MER2_type -135 210 6 652 267 81 0 chr15 52534521 52534682 -48845839 - MER5A DNA MER1_type -12 177 4 369 280 84 0 chr15 52534767 52534910 -48845611 + MER103 DNA DNA 8 162 -4 1880 156 3 7 chr15 52535131 52535433 -48845088 - AluSx SINE Alu -11 301 1 42 71 0 0 chr15 52535836 52535920 -48844601 + AT_rich Low_complexity Low_complexity 1 84 0 2364 62 3 3 chr15 52535935 52536223 -48844298 - AluY SINE Alu -23 288 1 1793 136 23 36 chr15 52537582 52537891 -48842630 - AluJo SINE Alu -7 305 1 1075 190 5 5 chr15 52538670 52538875 -48841646 + MER3 DNA MER1_type 2 206 -3 929 97 8 0 chr15 52540013 52540147 -48840374 - L1MA2 LINE L1 0 6304 6170 29 0 0 0 chr15 52540858 52540887 -48839634 + AT_rich Low_complexity Low_complexity 1 29 0 289 219 106 32 chr15 52541459 52541582 -48838939 + L1MC5 LINE L1 7782 7913 -48 1010 158 0 0 chr15 52541799 52541977 -48838544 + AluSg/x SINE Alu 131 308 0 269 303 58 10 chr15 52542289 52542413 -48838108 + MIR SINE MIR 43 173 -62 2488 57 0 3 chr15 52542493 52542791 -48837730 + AluY SINE Alu 1 297 -14 207 0 0 0 chr15 52542796 52542819 -48837702 + (TA)n Simple_repeat Simple_repeat 1 23 0 1905 120 20 10 chr15 52542827 52543119 -48837402 + AluSq SINE Alu 1 295 -18 2117 135 0 0 chr15 52543249 52543552 -48836969 - AluSx SINE Alu -8 304 2 2308 87 7 0 chr15 52543774 52544072 -48836449 + AluSp SINE Alu 13 312 -1 382 230 184 70 chr15 52544254 52544641 -48835880 + HAL1 LINE L1 647 1077 -1430 2052 38 15 0 chr15 52544642 52544904 -48835617 - L1PA5 LINE L1 -807 5339 5074 7156 30 0 0 chr15 52544904 52545743 -48834778 + L1PA5 LINE L1 5312 6152 -2 26 23 0 23 chr15 52545743 52545764 -48834757 + AT_rich Low_complexity Low_complexity 1 21 -22 2122 124 10 0 chr15 52545764 52546071 -48834450 + AluSx SINE Alu 1 310 -2 26 23 0 23 chr15 52546071 52546093 -48834428 + AT_rich Low_complexity Low_complexity 21 43 0 525 238 56 12 chr15 52546109 52546269 -48834252 + HAL1 LINE L1 1127 1293 -1214 254 309 0 0 chr15 52547131 52547199 -48833322 - L2 LINE L2 0 3313 3246 466 248 161 25 chr15 52547484 52547645 -48832876 + MER5A DNA MER1_type 7 189 0 629 217 25 0 chr15 52547711 52547831 -48832690 + FLAM_A SINE Alu 1 123 -10 271 313 139 43 chr15 52549187 52549797 -48830724 + L2 LINE L2 1793 2461 -853 412 307 85 112 chr15 52549971 52550083 -48830438 + L2 LINE L2 2838 2951 -321 1191 156 38 5 chr15 52550083 52550295 -48830226 + MER20 DNA MER1_type 1 219 0 412 307 85 112 chr15 52550295 52550485 -48830036 + L2 LINE L2 2951 3127 -145 2509 34 3 0 chr15 52550485 52550778 -48829743 - AluY SINE Alu -17 294 1 412 307 85 112 chr15 52550778 52550920 -48829601 + L2 LINE L2 3127 3271 -1 21 89 0 0 chr15 52551392 52551448 -48829073 + AT_rich Low_complexity Low_complexity 1 56 0 1558 182 23 0 chr15 52558816 52559118 -48821403 + MLT2C2 LTR ERVL 1 309 -155 219 200 47 12 chr15 52559119 52559204 -48821317 + (TA)n Simple_repeat Simple_repeat 1 88 0 306 122 0 0 chr15 52559209 52559258 -48821263 + MLT2C2 LTR ERVL 366 414 0 373 243 40 81 chr15 52560064 52560212 -48820309 - MIR SINE MIR -46 216 75 1864 114 0 88 chr15 52560276 52560584 -48819937 - AluSx SINE Alu -13 299 19 258 320 83 0 chr15 52561005 52561161 -48819360 + L1ME3A LINE L1 5616 5784 -378 2024 155 0 0 chr15 52561316 52561613 -48818908 - AluSq SINE Alu -16 297 1 314 289 89 61 chr15 52561683 52561863 -48818658 + L1ME3A LINE L1 5963 6147 -23 1562 122 9 0 chr15 52561932 52562161 -48818360 + AluSg/x SINE Alu 81 311 -1 2058 129 0 3 chr15 52562316 52562611 -48817910 + AluSc SINE Alu 1 294 -15 2201 131 0 0 chr15 52563736 52564048 -48816473 + AluSx SINE Alu 1 312 0 294 117 44 73 chr15 52564926 52565063 -48815458 + (CATATA)n Simple_repeat Simple_repeat 4 136 0 1658 173 14 0 chr15 52565438 52565716 -48814805 + AluJb SINE Alu 1 282 -30 2149 129 0 7 chr15 52565748 52566058 -48814463 + AluSx SINE Alu 5 312 0 1449 161 66 8 chr15 52566266 52566509 -48814012 - AluJb SINE Alu -17 295 39 2051 102 0 7 chr15 52566987 52567262 -48813259 - AluSx SINE Alu -39 273 1 234 314 85 60 chr15 52567270 52567658 -48812863 + L2 LINE L2 2659 3059 -213 22 35 0 0 chr15 52567859 52567888 -48812633 + AT_rich Low_complexity Low_complexity 1 29 0 1489 165 11 11 chr15 52568275 52568554 -48811967 - L1PA15 LINE L1 0 6165 5887 22 0 0 0 chr15 52568564 52568586 -48811935 + AT_rich Low_complexity Low_complexity 1 22 0 369 272 64 8 chr15 52568755 52568990 -48811531 + HAL1 LINE L1 945 1192 -1315 230 136 45 0 chr15 52568996 52569040 -48811481 + MER105 DNA DNA 6 51 -153 369 240 0 52 chr15 52569052 52569148 -48811373 + MER58 DNA MER1_type 9 99 -242 470 186 10 0 chr15 52569162 52569259 -48811262 + MER58 DNA MER1_type 2320 2417 -3 661 182 34 0 chr15 52569261 52569409 -48811112 + MER105 DNA DNA 45 197 -7 366 289 104 44 chr15 52569413 52569559 -48810962 + HAL1 LINE L1 1198 1334 -1173 2248 141 25 0 chr15 52569559 52569914 -48810607 + THE1B LTR MaLR 1 364 0 366 289 104 44 chr15 52569914 52570151 -48810370 + HAL1 LINE L1 1334 1604 -903 1565 148 32 0 chr15 52570697 52570980 -48809541 - L1MB8 LINE L1 -6 6172 5881 2197 107 0 40 chr15 52570980 52571148 -48809373 + THE1C LTR MaLR 2 150 -225 7106 43 3 20 chr15 52571148 52572643 -48807878 + L1PA5 LINE L1 4670 6149 -5 2197 107 0 40 chr15 52572643 52572821 -48807700 + THE1C LTR MaLR 150 334 -41 2200 101 3 0 chr15 52572822 52573108 -48807413 + AluSq SINE Alu 1 287 -26 335 130 19 0 chr15 52573133 52573187 -48807334 + THE1C LTR MaLR 321 375 0 1121 132 56 0 chr15 52573187 52573400 -48807121 - L1MB8 LINE L1 -298 5886 5662 42 0 0 0 chr15 52573726 52573768 -48806753 + AT_rich Low_complexity Low_complexity 1 42 0 397 225 88 88 chr15 52573772 52573811 -48806710 - L1MC4a LINE L1 -1880 5928 5890 2289 121 3 0 chr15 52573811 52574118 -48806403 - AluSx SINE Alu -4 308 1 397 225 88 88 chr15 52574118 52574260 -48806261 - L1MC4a LINE L1 -1917 5891 5747 588 285 72 13 chr15 52574266 52574501 -48806020 + MLT1L LTR MaLR 39 287 -328 2339 103 0 3 chr15 52574516 52574816 -48805705 + AluSc SINE Alu 1 299 -10 238 302 170 19 chr15 52575192 52575298 -48805223 + L2 LINE L2 3116 3237 -35 2148 144 0 0 chr15 52575737 52576043 -48804478 - AluSq SINE Alu -7 306 1 2930 193 40 30 chr15 52576622 52577029 -48803492 + L1MB1 LINE L1 4490 4891 -1255 1995 131 26 26 chr15 52577029 52577334 -48803187 + AluSc SINE Alu 1 305 -4 2930 193 40 30 chr15 52577334 52577734 -48802787 + L1MB1 LINE L1 4891 5305 -841 1517 201 23 23 chr15 52577776 52578085 -48802436 + AluJb SINE Alu 3 311 -1 1761 168 70 22 chr15 52578099 52578457 -48802064 + THE1C LTR MaLR 1 375 0 2909 174 43 60 chr15 52578457 52579374 -48801147 + L1MB1 LINE L1 5297 6176 -2 366 161 32 0 chr15 52579431 52579524 -48800997 + CT-rich Low_complexity Low_complexity 2 97 0 822 230 62 44 chr15 52579546 52579772 -48800749 - AluJo SINE Alu -82 230 1 33 25 0 0 chr15 52579840 52579880 -48800641 + AT_rich Low_complexity Low_complexity 1 40 0 2309 243 98 20 chr15 52579943 52580514 -48800007 - L1M4 LINE L1 -2739 3407 2882 2038 136 3 29 chr15 52580514 52580823 -48799698 - AluSx SINE Alu -11 301 1 2309 243 98 20 chr15 52580823 52581284 -48799237 - L1M4 LINE L1 -3264 2882 2295 1921 170 120 8 chr15 52581287 52581670 -48798851 + MSTA LTR MaLR 3 428 0 6277 198 42 6 chr15 52581670 52582971 -48797550 + MSTA-int LTR MaLR 1 1348 -303 22649 106 8 13 chr15 52582972 52586537 -48793984 + L1PA5 LINE L1 13 3560 -2586 13075 41 5 0 chr15 52586537 52588913 -48791608 + L1PA5 LINE L1 3774 6153 -1 713 301 178 6 chr15 52589423 52589765 -48790756 - L2 LINE L2 -1279 2035 1635 201 74 0 0 chr15 52590545 52590572 -48789949 + (A)n Simple_repeat Simple_repeat 1 27 0 2244 80 0 21 chr15 52590997 52591313 -48789208 + AluY SINE Alu 1 310 0 482 222 203 57 chr15 52591862 52591934 -48788587 - MIR SINE MIR 0 262 202 2244 105 3 0 chr15 52591934 52592239 -48788282 - AluSx SINE Alu -6 306 1 482 222 203 57 chr15 52592239 52592378 -48788143 - MIR SINE MIR -60 202 20 2288 122 0 0 chr15 52592380 52592692 -48787829 - AluSx SINE Alu 0 312 1 1782 86 0 4 chr15 52592699 52592931 -48787590 - AluSc SINE Alu -39 270 40 254 352 86 32 chr15 52592962 52593368 -48787153 + L2 LINE L2 1798 2225 -1089 2233 116 3 0 chr15 52593481 52593774 -48786747 - AluSp SINE Alu -19 294 1 1476 132 40 158 chr15 52593882 52593926 -48786595 - L1MB1 LINE L1 0 6168 6120 357 82 0 0 chr15 52593926 52593975 -48786546 + (CACTG)n Simple_repeat Simple_repeat 4 52 0 1711 162 0 30 chr15 52593983 52594279 -48786242 - AluJb SINE Alu -24 288 2 1476 132 40 158 chr15 52594279 52594651 -48785870 - L1MB1 LINE L1 -55 6113 5699 522 221 0 0 chr15 52594651 52594755 -48785766 - U13 snRNA snRNA 0 104 1 2047 134 20 13 chr15 52594765 52595064 -48785457 - AluJb SINE Alu -11 301 1 1476 132 40 158 chr15 52595064 52595083 -48785438 - L1MB1 LINE L1 -479 5689 5772 407 18 0 0 chr15 52595083 52595138 -48785383 - L1MA3 LINE L1 0 6305 6251 1476 132 40 158 chr15 52595138 52595180 -48785341 - L1MB1 LINE L1 -395 5773 5728 * 3782 238 55 40 chr15 52595175 52596506 -48784015 - L1M4 LINE L1 -901 5245 3890 4705 44 5 0 chr15 52596506 52597077 -48783444 + L1PA6 LINE L1 5576 6149 -5 3782 238 55 40 chr15 52597077 52597154 -48783367 - L1M4 LINE L1 -2256 3890 3816 3161 240 63 41 chr15 52597144 52598416 -48782105 - L1MEc LINE L1 -2165 3915 2616 * 1393 235 135 5 chr15 52598442 52598842 -48781679 + MLT1E LTR MaLR 1 452 -141 1622 156 3 3 chr15 52598842 52599121 -48781400 - MER54A LTR ERVL 0 901 623 2091 143 42 29 chr15 52599121 52599658 -48780863 + MLT2A2 LTR ERVL 1 546 -8 3294 162 39 20 chr15 52599666 52600278 -48780243 - MER54A LTR ERVL -275 626 3 683 148 19 77 chr15 52600303 52600416 -48780105 + MLT1E LTR MaLR 448 552 -41 2183 85 4 0 chr15 52600416 52600719 -48779802 - AluY SINE Alu 0 304 1 683 148 19 77 chr15 52600719 52600759 -48779762 + MLT1E LTR MaLR 552 593 0 1446 275 70 56 chr15 52600768 52601394 -48779127 - L1MEc LINE L1 -3420 2660 2044 2253 123 0 0 chr15 52601394 52601694 -48778827 - AluSq SINE Alu -13 300 1 1446 275 70 56 chr15 52601694 52601734 -48778787 - L1MEc LINE L1 -4036 2044 2006 2077 123 23 0 chr15 52601734 52602035 -48778486 - AluSx SINE Alu -4 308 1 1446 275 70 56 chr15 52602035 52602079 -48778442 - L1MEc LINE L1 -4074 2006 1964 1518 166 0 0 chr15 52602079 52602320 -48778201 - AluJb SINE Alu -9 303 63 1446 275 70 56 chr15 52602320 52603239 -48777282 - L1MEc LINE L1 -4116 1964 1046 198 0 0 0 chr15 52603239 52603261 -48777260 + (TTG)n Simple_repeat Simple_repeat 2 23 0 1446 275 70 56 chr15 52603261 52603453 -48777068 - L1MEc LINE L1 -5034 1046 858 576 245 69 53 chr15 52603479 52603601 -48776920 - L1MEc LINE L1 -5378 692 573 457 75 12 12 chr15 52603601 52603681 -48776840 + (TG)n Simple_repeat Simple_repeat 2 81 0 576 245 69 53 chr15 52603681 52603693 -48776828 - L1MEc LINE L1 -5497 573 563 1826 184 83 32 chr15 52603693 52604101 -48776420 + MSTB1 LTR MaLR 3 431 -1 576 245 69 53 chr15 52604101 52604147 -48776374 - L1MEc LINE L1 -5507 563 519 1514 172 4 15 chr15 52604147 52604415 -48776106 - AluJb SINE Alu -10 302 38 576 245 69 53 chr15 52604415 52604477 -48776044 - L1MEc LINE L1 -5551 519 444 429 54 0 0 chr15 52604604 52604660 -48775861 + (TATG)n Simple_repeat Simple_repeat 2 57 0 772 111 0 0 chr15 52604660 52604759 -48775762 - AluSx SINE Alu -20 292 194 1060 113 0 7 chr15 52604760 52604902 -48775619 - AluSx SINE Alu -172 141 1 876 235 34 0 chr15 52604988 52605192 -48775329 - L1MEc LINE L1 -5853 217 7 31 92 0 0 chr15 52605553 52605640 -48774881 + AT_rich Low_complexity Low_complexity 1 87 0 2107 118 10 3 chr15 52605847 52606136 -48774385 - AluSx SINE Alu -21 291 1 493 263 44 67 chr15 52606226 52606391 -48774130 + L1MC4 LINE L1 7753 7909 -133 384 22 0 0 chr15 52606391 52606436 -48774085 + (TG)n Simple_repeat Simple_repeat 2 46 0 493 263 44 67 chr15 52606436 52606567 -48773954 + L1MC4 LINE L1 7909 8042 0 22 56 0 0 chr15 52606573 52606609 -48773912 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr15 52606635 52606664 -48773857 + AT_rich Low_complexity Low_complexity 1 29 0 1400 191 70 0 chr15 52606702 52606959 -48773562 + AluJo SINE Alu 14 288 -24 389 279 78 6 chr15 52606961 52607140 -48773381 + L1ME LINE L1 4462 4653 -1493 390 290 92 25 chr15 52607602 52607813 -48772708 + L1ME LINE L1 5514 5714 -456 * 20658 167 35 19 chr15 52607810 52610293 -48770228 + L1M1 LINE L1 12 2452 -5244 2220 118 0 0 chr15 52610293 52610589 -48769932 + AluSx SINE Alu 1 296 -16 20658 167 35 19 chr15 52610589 52610824 -48769697 + L1M1 LINE L1 2452 2682 -5014 216 0 0 0 chr15 52610824 52610848 -48769673 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 20658 167 35 19 chr15 52610848 52612207 -48768314 + L1M1 LINE L1 2682 4017 -3679 1301 185 43 46 chr15 52612207 52612510 -48768011 + AluJo SINE Alu 1 302 -10 20658 167 35 19 chr15 52612510 52613833 -48766688 + L1M1 LINE L1 4017 5316 -2380 2383 100 7 0 chr15 52613833 52614143 -48766378 - AluSx SINE Alu 0 312 1 20658 167 35 19 chr15 52614143 52615565 -48764956 + L1M1 LINE L1 5316 6953 -743 2249 85 3 16 chr15 52615578 52615883 -48764638 - AluY SINE Alu -10 301 1 2029 141 64 0 chr15 52616116 52616442 -48764079 + MER7A DNA MER2_type 2 346 0 418 192 15 92 chr15 52616503 52616633 -48763888 + L1MEd LINE L1 151 270 -5935 23 54 0 0 chr15 52616672 52616709 -48763812 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr15 52618008 52618032 -48762489 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr15 52618140 52618184 -48762337 + AT_rich Low_complexity Low_complexity 1 44 0 2943 3 0 0 chr15 52618290 52618602 -48761919 - AluYb8 SINE Alu -5 313 2 1816 98 35 105 chr15 52618868 52619183 -48761338 - AluSx SINE Alu -19 293 1 317 280 124 42 chr15 52619299 52619492 -48761029 + HAL1 LINE L1 586 794 -1713 * 624 294 5 5 chr15 52619489 52619683 -48760838 + HAL1 LINE L1 1700 1893 -614 237 83 0 0 chr15 52619730 52619766 -48760755 + (TG)n Simple_repeat Simple_repeat 2 37 0 2136 88 0 82 chr15 52619984 52620315 -48760206 - AluSx SINE Alu -8 304 1 738 208 113 0 chr15 52620619 52620787 -48759734 + MER5A DNA MER1_type 1 187 -2 2776 188 97 21 chr15 52621059 52621677 -48758844 + L1ME2 LINE L1 5481 6145 -19 294 269 12 54 chr15 52621696 52621790 -48758731 + L1MEd LINE L1 1623 1709 -4687 2384 81 0 7 chr15 52621790 52622086 -48758435 + AluSq SINE Alu 1 294 -19 294 269 12 54 chr15 52622086 52622158 -48758363 + L1MEd LINE L1 1709 1782 -4614 207 139 56 0 chr15 52622236 52622272 -48758249 + (CGTG)n Simple_repeat Simple_repeat 2 39 0 185 381 52 19 chr15 52622276 52622431 -48758090 + L2 LINE L2 2752 2911 -403 22 0 0 0 chr15 52622535 52622557 -48757964 + AT_rich Low_complexity Low_complexity 1 22 0 2152 135 3 0 chr15 52622564 52622861 -48757660 - AluSx SINE Alu -14 298 1 211 333 162 8 chr15 52622936 52623053 -48757468 + L2 LINE L2 3134 3268 -4 340 275 72 29 chr15 52623307 52623445 -48757076 + MIR SINE MIR 119 262 0 193 173 39 77 chr15 52624086 52624138 -48756383 + MIR3 SINE MIR 155 204 -4 3394 233 107 29 chr15 52624499 52624705 -48755816 + L1MC4 LINE L1 6463 6652 -1390 285 29 0 0 chr15 52624705 52624739 -48755782 + (CA)n Simple_repeat Simple_repeat 2 35 0 3394 233 107 29 chr15 52624739 52625531 -48754990 + L1MC4 LINE L1 6652 7548 -494 2494 70 0 19 chr15 52625531 52625845 -48754676 - AluY SINE Alu -3 308 1 3394 233 107 29 chr15 52625845 52625885 -48754636 + L1MC4 LINE L1 7548 7583 -459 6867 15 0 0 chr15 52625885 52626970 -48753551 - L1P1 LINE L1 -464 5691 4607 4218 19 2 0 chr15 52626960 52627437 -48753084 + L1HS LINE L1 5677 6154 -1 * 282 287 13 13 chr15 52627449 52627905 -48752616 + L1MD3 LINE L1 7578 8019 -19 2194 101 0 0 chr15 52627905 52628191 -48752330 + AluSx SINE Alu 1 286 -26 282 287 13 13 chr15 52628191 52628211 -48752310 + L1MD3 LINE L1 8019 8038 0 324 283 62 0 chr15 52628632 52628745 -48751776 - LTR67 LTR ERVL -4 553 434 3233 127 6 30 chr15 52628770 52629273 -48751248 + MER1A DNA MER1_type 37 527 -2 452 260 0 0 chr15 52630381 52630477 -48750044 + L2 LINE L2 3175 3270 -2 266 138 17 0 chr15 52632564 52632622 -48747899 + GA-rich Low_complexity Low_complexity 1 59 0 241 200 25 58 chr15 52632714 52632834 -48747687 + (CGGGG)n Simple_repeat Simple_repeat 4 119 0 2003 120 3 3 chr15 52633724 52634008 -48746513 + AluSx SINE Alu 1 284 -28 568 321 29 29 chr15 52635785 52636031 -48744490 - MLT1J LTR MaLR -40 471 226 2074 222 113 9 chr15 52636204 52636397 -48744124 + L1MC4 LINE L1 6463 6635 -1407 339 25 0 0 chr15 52636397 52636437 -48744084 + (CA)n Simple_repeat Simple_repeat 1 40 0 2074 222 113 9 chr15 52636437 52636811 -48743710 + L1MC4 LINE L1 6635 7089 -953 754 219 306 0 chr15 52636813 52637110 -48743411 + L1MC4 LINE L1 7240 7627 -415 358 118 118 59 chr15 52637113 52637198 -48743323 - MLT2B1 LTR ERVL 0 520 431 1737 154 0 4 chr15 52637205 52637464 -48743057 - AluSx SINE Alu -52 260 3 266 310 152 15 chr15 52637685 52637882 -48742639 + L2 LINE L2 2241 2464 -850 290 333 56 77 chr15 52638081 52638131 -48742390 - LTR16C LTR ERVL -32 459 409 943 229 50 5 chr15 52638131 52638332 -48742189 - MER63A DNA MER1_type 0 210 1 290 333 56 77 chr15 52638332 52638566 -48741955 - LTR16C LTR ERVL -82 409 181 896 291 67 46 chr15 52638916 52639397 -48741124 - ERVL LTR ERVL -399 5365 4875 881 143 0 0 chr15 52639974 52640100 -48740421 - AluSg/x SINE Alu -16 294 169 667 116 11 0 chr15 52640745 52640840 -48739681 + MSTD LTR MaLR 1 96 -300 1283 156 18 53 chr15 52640842 52641067 -48739454 + AluJo SINE Alu 1 217 -95 264 130 74 19 chr15 52641067 52641121 -48739400 + MSTB2 LTR MaLR 390 446 -11 1922 118 8 0 chr15 52641160 52641422 -48739099 + AluSx SINE Alu 3 266 -46 1307 90 6 6 chr15 52641422 52641589 -48738932 - AluSc SINE Alu -142 167 1 2829 3 0 0 chr15 52641928 52642228 -48738293 - AluYa5 SINE Alu -11 300 1 27 0 0 0 chr15 52642233 52642260 -48738261 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr15 52643070 52643104 -48737417 + AT_rich Low_complexity Low_complexity 1 34 0 185 94 31 0 chr15 52646147 52646179 -48734342 + (CGG)n Simple_repeat Simple_repeat 2 34 0 254 182 0 0 chr15 52646179 52646234 -48734287 + (CTG)n Simple_repeat Simple_repeat 2 56 0 585 110 0 0 chr15 52646234 52646343 -48734178 + (CGG)n Simple_repeat Simple_repeat 3 111 0 2265 92 0 3 chr15 52646707 52646989 -48733532 + AluSg SINE Alu 11 291 -19 2025 136 3 7 chr15 52647268 52647570 -48732951 - AluSx SINE Alu -8 304 4 1129 230 75 0 chr15 52647588 52647866 -48732655 - L1ME3A LINE L1 -13 6157 5859 2597 163 36 13 chr15 52647870 52648317 -48732204 - LTR32 LTR ERVL 0 471 15 1784 215 75 24 chr15 52648324 52648859 -48731662 - L1ME3A LINE L1 -317 5849 5275 1856 147 60 0 chr15 52648888 52649173 -48731348 + AluJb SINE Alu 3 304 -8 2490 91 6 3 chr15 52649436 52649765 -48730756 + THE1C LTR MaLR 1 330 -45 2298 85 7 0 chr15 52649765 52650058 -48730463 + AluSq SINE Alu 1 295 -18 1828 72 0 5 chr15 52650075 52650298 -48730223 - AluSc SINE Alu -87 222 1 27 0 0 0 chr15 52650308 52650335 -48730186 + AT_rich Low_complexity Low_complexity 1 27 0 2517 58 0 13 chr15 52650919 52651227 -48729294 + AluY SINE Alu 1 304 -7 1716 182 17 10 chr15 52651616 52651913 -48728608 + AluJb SINE Alu 1 299 -13 2939 159 116 16 chr15 52652000 52652560 -48727961 - LTR26E LTR ERV1 -2 620 5 2932 73 3 11 chr15 52652560 52652917 -48727604 - THE1A LTR MaLR 0 355 1 12818 77 6 6 chr15 52652917 52654497 -48726024 - THE1A-int LTR MaLR 0 1580 1 2890 82 3 3 chr15 52654497 52654852 -48725669 - THE1A LTR MaLR 0 355 1 2471 161 157 75 chr15 52655067 52655738 -48724783 - LTR8A LTR ERV1 -1 726 1 633 282 71 34 chr15 52655913 52656179 -48724342 - MLT1L LTR MaLR -339 276 1 467 345 80 4 chr15 52656206 52656432 -48724089 + L2 LINE L2 2841 3083 -189 3004 179 34 20 chr15 52656466 52657023 -48723498 + MER82 DNA MER2_type 1 565 -88 1208 227 126 64 chr15 52657023 52657345 -48723176 + LTR48 LTR ERV1 1 302 -342 1574 175 13 20 chr15 52657345 52657648 -48722873 - AluJb SINE Alu -11 301 1 1208 227 126 64 chr15 52657648 52657967 -48722554 + LTR48 LTR ERV1 302 629 -15 422 213 0 0 chr15 52657989 52658064 -48722457 + MER82 DNA MER2_type 570 644 -9 2122 181 84 73 chr15 52658064 52658612 -48721909 + MLT2B3 LTR ERVL 1 554 0 10465 183 40 17 chr15 52659103 52660560 -48719961 - L1PA16 LINE L1 -135 6031 4608 1868 135 85 0 chr15 52660560 52660841 -48719680 - AluSx SINE Alu -5 307 3 10465 183 40 17 chr15 52660841 52662184 -48718337 - L1PA16 LINE L1 -1558 4608 3136 1966 136 0 30 chr15 52662184 52662479 -48718042 - AluSx SINE Alu -17 295 10 10465 183 40 17 chr15 52662479 52662883 -48717638 - L1PA16 LINE L1 -3030 3136 2743 7176 111 32 16 chr15 52663227 52664279 -48716242 + MER11C LTR ERVK 3 1071 0 1241 279 72 65 chr15 52664356 52664614 -48715907 - L1M4 LINE L1 -1371 4775 4520 2213 118 0 7 chr15 52664614 52664911 -48715610 + AluSx SINE Alu 2 296 -16 1241 279 72 65 chr15 52664911 52665458 -48715063 - L1M4 LINE L1 -1626 4520 3964 2391 71 0 14 chr15 52665521 52665818 -48714703 - AluY SINE Alu -18 293 1 21 0 0 0 chr15 52665818 52665839 -48714682 + AT_rich Low_complexity Low_complexity 1 21 0 353 228 118 37 chr15 52665949 52666085 -48714436 - L1M4 LINE L1 -2228 3918 3772 1038 230 161 50 chr15 52666087 52666529 -48713992 + L2 LINE L2 2479 2988 -325 309 311 8 0 chr15 52666556 52666675 -48713846 + (TA)n Simple_repeat Simple_repeat 1 120 0 754 259 85 49 chr15 52666676 52666981 -48713540 + L2 LINE L2 2997 3312 -1 1084 179 0 0 chr15 52667177 52667345 -48713176 - AluJb SINE Alu -13 299 132 1080 187 34 14 chr15 52667883 52668092 -48712429 + AluJo SINE Alu 87 299 -13 1668 181 25 16 chr15 52668618 52668933 -48711588 - 7SLRNA srpRNA srpRNA -2 318 1 435 257 86 0 chr15 52669466 52669571 -48710950 + MER82 DNA MER2_type 540 653 0 638 279 84 37 chr15 52669668 52669966 -48710555 + L2 LINE L2 1465 1776 -1538 23 33 0 0 chr15 52670114 52670144 -48710377 + AT_rich Low_complexity Low_complexity 1 30 0 235 325 113 0 chr15 52670270 52670464 -48710057 - L1MC4a LINE L1 -1731 6077 5862 270 0 0 0 chr15 52670487 52670517 -48710004 + (TG)n Simple_repeat Simple_repeat 2 31 0 2429 167 71 29 chr15 52670558 52670667 -48709854 + LTR64 LTR ERVK 3 106 -407 2143 130 0 0 chr15 52670667 52670974 -48709547 - AluSx SINE Alu -5 307 1 2429 167 71 29 chr15 52670974 52671354 -48709167 + LTR64 LTR ERVK 106 513 0 1950 158 7 0 chr15 52671922 52672220 -48708301 - AluJb SINE Alu -9 303 4 2003 106 33 0 chr15 52672803 52673101 -48707420 + AluSx SINE Alu 1 307 0 415 162 247 19 chr15 52673136 52673290 -48707231 - MER53 DNA DNA 0 189 1 2643 201 36 4 chr15 52673809 52674364 -48706157 + MER90 LTR ERV1 1 614 0 2434 151 34 80 chr15 52674397 52674874 -48705647 - LTR32 LTR ERVL 0 471 17 194 281 18 0 chr15 52676085 52676142 -48704379 + MIR3 SINE MIR 147 204 -4 266 208 135 10 chr15 52676265 52676361 -48704160 + L1ME4a LINE L1 5392 5499 -622 494 238 133 95 chr15 52676381 52676619 -48703902 + L1ME4a LINE L1 5551 5779 -342 684 221 41 17 chr15 52676619 52676791 -48703730 - MER5B DNA MER1_type -1 177 2 494 238 133 95 chr15 52676791 52676894 -48703627 + L1ME4a LINE L1 5779 5912 -209 3041 117 19 0 chr15 52676894 52677320 -48703201 + MER57B LTR ERV1 1 434 0 494 238 133 95 chr15 52677320 52677377 -48703144 + L1ME4a LINE L1 5912 5965 -156 2020 139 180 14 chr15 52677603 52677970 -48702551 - MSTA LTR MaLR 0 428 1 813 199 7 0 chr15 52678257 52678393 -48702128 + AluJo SINE Alu 120 256 -56 342 0 0 0 chr15 52678428 52678466 -48702055 + (TG)n Simple_repeat Simple_repeat 2 39 0 1771 153 7 33 chr15 52678962 52679269 -48701252 - AluJb SINE Alu -12 300 2 352 234 188 16 chr15 52679843 52679971 -48700550 - MIR SINE MIR -32 230 81 1576 159 4 19 chr15 52680433 52680691 -48699830 + AluJo SINE Alu 44 297 -15 268 279 0 0 chr15 52681462 52681523 -48698998 + HAL1 LINE L1 258 318 -2189 237 128 0 0 chr15 52681523 52681570 -48698951 + (TG)n Simple_repeat Simple_repeat 2 48 0 2560 147 10 76 chr15 52681571 52682060 -48698461 + LTR32 LTR ERVL 15 471 0 309 287 69 0 chr15 52682082 52682183 -48698338 + HAL1 LINE L1 341 448 -2059 4330 135 13 5 chr15 52682393 52683021 -48697500 + MER51A LTR ERV1 1 633 -1 727 246 135 30 chr15 52683094 52683456 -48697065 + HAL1 LINE L1 2097 2496 -11 395 183 0 0 chr15 52684698 52684769 -48695752 - MSTD LTR MaLR 0 396 326 11202 111 17 7 chr15 52684825 52686442 -48694079 - Tigger1 DNA MER2_type -32 2386 754 2372 92 3 3 chr15 52687925 52688229 -48692292 + AluSc SINE Alu 1 304 -5 277 134 15 15 chr15 52688299 52688366 -48692155 + (TG)n Simple_repeat Simple_repeat 2 68 0 273 282 59 29 chr15 52689402 52689572 -48690949 + LTR33A LTR ERVL 9 183 -340 438 234 193 0 chr15 52689625 52689796 -48690725 + LTR33A LTR ERVL 317 520 -3 2085 111 14 0 chr15 52689823 52690111 -48690410 - AluSx SINE Alu -20 292 1 717 277 31 71 chr15 52690664 52691018 -48689503 - MER102b DNA MER1_type 0 341 2 284 295 19 29 chr15 52691106 52691211 -48689310 - MARNA DNA Mariner -170 416 313 1060 200 0 0 chr15 52692141 52692316 -48688205 + FAM SINE Alu 1 175 0 2169 146 18 15 chr15 52692341 52692677 -48687844 + MER1B DNA MER1_type 1 337 -2 2473 94 3 0 chr15 52692781 52693090 -48687431 - AluSx SINE Alu -2 310 1 2590 52 0 3 chr15 52693497 52693803 -48686718 - AluY SINE Alu -6 305 1 535 122 14 0 chr15 52693944 52694018 -48686503 - MER1B DNA MER1_type 0 329 255 1775 120 3 35 chr15 52694048 52694331 -48686190 - MER1B DNA MER1_type -65 274 1 759 279 56 89 chr15 52694444 52694822 -48685699 + MLT1H LTR MaLR 14 439 -110 329 275 0 12 chr15 52694844 52694924 -48685597 - MLT1H LTR MaLR -393 156 78 981 245 158 44 chr15 52694971 52695423 -48685098 - MLT1H1 LTR MaLR -8 541 1 371 274 74 122 chr15 52695446 52695782 -48684739 - MLT1H1-int LTR MaLR -24 1347 1028 272 347 53 12 chr15 52696328 52696536 -48683985 - MLT1H1-int LTR MaLR -834 537 314 2266 57 14 10 chr15 52696596 52696892 -48683629 + AluY SINE Alu 1 297 -14 1839 148 0 10 chr15 52697004 52697302 -48683219 - AluSx SINE Alu -17 295 1 213 121 0 0 chr15 52697319 52697352 -48683169 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 556 250 55 47 chr15 52697488 52697724 -48682797 + L1MC5 LINE L1 7713 7950 -11 4358 178 10 48 chr15 52698892 52699639 -48680882 + L1MC1 LINE L1 24 737 -5689 1951 125 13 26 chr15 52699639 52699942 -48680579 - AluY SINE Alu -10 301 3 4358 178 10 48 chr15 52699942 52700026 -48680495 + L1MC1 LINE L1 737 823 -5603 889 174 174 5 chr15 52700026 52700210 -48680311 + AluJb SINE Alu 84 298 -14 2197 126 0 0 chr15 52700210 52700503 -48680018 + AluSx SINE Alu 1 293 -19 7305 191 47 58 chr15 52700503 52701349 -48679172 + L1MC1 LINE L1 820 1674 -4752 2355 103 0 0 chr15 52701349 52701659 -48678862 + AluSg SINE Alu 1 310 0 7305 191 47 58 chr15 52701659 52702069 -48678452 + L1MC1 LINE L1 1674 2087 -4339 1380 203 105 0 chr15 52702069 52702335 -48678186 + AluJb SINE Alu 1 294 -18 7305 191 47 58 chr15 52702335 52703443 -48677078 + L1MC1 LINE L1 2087 3206 -3220 1529 167 62 11 chr15 52703443 52703718 -48676803 + AluJo SINE Alu 1 289 -23 7305 191 47 58 chr15 52703718 52704034 -48676487 + L1MC1 LINE L1 3206 3524 -2902 799 174 8 15 chr15 52704034 52704166 -48676355 - FLAM_C SINE Alu -2 131 1 7305 191 47 58 chr15 52704166 52705117 -48675404 + L1MC1 LINE L1 3524 4415 -2011 3645 43 9 2 chr15 52705089 52705530 -48674991 - L1PA5 LINE L1 0 6154 5711 * 15478 26 2 0 chr15 52705091 52707691 -48672830 - L1PA5 LINE L1 -2 6152 3546 6983 54 13 0 chr15 52707691 52709042 -48671479 - L1P2 LINE L1 -368 5786 4424 3133 223 22 87 chr15 52709042 52710277 -48670244 + L1MC1 LINE L1 4377 5531 -895 2843 7 0 0 chr15 52710588 52710895 -48669626 - AluYa5 SINE Alu -4 307 1 237 179 0 18 chr15 52711475 52711531 -48668990 + A-rich Low_complexity Low_complexity 4 58 0 2042 122 0 7 chr15 52712022 52712338 -48668183 - AluSx SINE Alu 0 314 1 6226 123 10 35 chr15 52713050 52713141 -48667380 + L1MC1 LINE L1 5535 5627 -986 1641 172 31 17 chr15 52713141 52713431 -48667090 + AluJb SINE Alu 1 294 -18 6226 123 10 35 chr15 52713431 52714441 -48666080 + L1MC1 LINE L1 5627 6609 -4 2219 100 7 23 chr15 52714484 52714793 -48665728 - AluSx SINE Alu -8 304 1 249 108 0 0 chr15 52714854 52714891 -48665630 + (A)n Simple_repeat Simple_repeat 1 37 0 24 0 0 0 chr15 52715601 52715625 -48664896 + AT_rich Low_complexity Low_complexity 1 24 0 192 345 129 9 chr15 52716052 52716168 -48664353 - L2 LINE L2 0 3272 3143 183 342 26 35 chr15 52716291 52716405 -48664116 - L2 LINE L2 -327 2986 2874 229 299 0 26 chr15 52716487 52716564 -48663957 + MLT1K LTR MaLR 40 114 -474 558 252 103 79 chr15 52716654 52717420 -48663101 - L1MC5 LINE L1 -36 7925 7179 952 151 27 0 chr15 52717420 52717605 -48662916 - L1MA4 LINE L1 -6 6294 6105 1815 181 0 13 chr15 52717605 52717909 -48662612 - AluJo SINE Alu -12 300 1 558 252 103 79 chr15 52717909 52717991 -48662530 - L1MC5 LINE L1 -781 7180 7055 306 310 62 8 chr15 52718065 52718194 -48662327 - L1ME3A LINE L1 -28 6142 6007 2220 103 0 0 chr15 52718325 52718617 -48661904 - AluY SINE Alu -19 292 1 347 178 136 17 chr15 52718626 52718744 -48661777 - L1MC5 LINE L1 -440 7521 7390 1871 110 4 8 chr15 52718756 52719036 -48661485 - AluSx SINE Alu 0 306 28 1041 171 47 85 chr15 52719036 52719407 -48661114 - L1MC5 LINE L1 -827 7134 6797 999 195 54 36 chr15 52719837 52719996 -48660525 - L1MC5 LINE L1 -2272 5536 5368 2209 167 39 112 chr15 52719996 52720594 -48659927 - MER41C LTR ERV1 0 554 1 999 195 54 36 chr15 52720594 52720711 -48659810 - L1MC5 LINE L1 -2440 5368 5255 234 320 51 0 chr15 52720873 52721029 -48659492 - L1MC5 LINE L1 -1458 4688 4525 2193 119 0 0 chr15 52721087 52721382 -48659139 - AluSx SINE Alu -17 295 1 22 0 0 0 chr15 52721406 52721428 -48659093 + AT_rich Low_complexity Low_complexity 1 22 0 4576 69 0 0 chr15 52721487 52722067 -48658454 + L1PA5 LINE L1 5574 6153 -1 2105 101 49 0 chr15 52722362 52722648 -48657873 - AluSq SINE Alu -13 300 1 275 383 81 11 chr15 52722722 52723007 -48657514 - L2 LINE L2 -1001 2313 2009 1280 179 81 54 chr15 52723733 52723890 -48656631 - MER2 DNA MER2_type 0 344 193 2228 115 0 0 chr15 52723890 52724186 -48656335 - AluSx SINE Alu -16 296 1 1280 179 81 54 chr15 52724186 52724363 -48656158 - MER2 DNA MER2_type -151 193 1 299 293 104 37 chr15 52724854 52725018 -48655503 - L3 LINE CR1 -876 701 527 208 234 79 22 chr15 52725007 52725089 -48655432 - MIR SINE MIR -135 73 7 * 1429 229 93 20 chr15 52725319 52725761 -48654760 - MLT1J LTR MaLR -37 474 1 182 304 209 0 chr15 52726279 52726394 -48654127 + MIR SINE MIR 3 141 -121 26 50 0 0 chr15 52726681 52726721 -48653800 + AT_rich Low_complexity Low_complexity 1 40 0 576 263 127 15 chr15 52727313 52727572 -48652949 + MLT1L LTR MaLR 316 603 -12 192 77 0 0 chr15 52732888 52732914 -48647607 + (TTGGGG)n Simple_repeat Simple_repeat 6 31 0 2029 120 36 17 chr15 52735525 52735826 -48644695 + AluSx SINE Alu 1 307 -5 25 0 0 0 chr15 52737157 52737182 -48643339 + AT_rich Low_complexity Low_complexity 1 25 0 305 289 42 30 chr15 52737688 52737854 -48642667 + MARNA DNA Mariner 327 494 -92 540 283 131 11 chr15 52738136 52738327 -48642194 + MIR SINE MIR 1 214 -48 22 35 0 0 chr15 52739027 52739056 -48641465 + AT_rich Low_complexity Low_complexity 1 29 0 206 266 16 0 chr15 52739068 52739132 -48641389 + (TA)n Simple_repeat Simple_repeat 1 65 0 216 0 0 0 chr15 52741184 52741208 -48639313 + (T)n Simple_repeat Simple_repeat 1 24 0 239 250 135 29 chr15 52742147 52742251 -48638270 - MIR3 SINE MIR -6 202 88 316 352 184 31 chr15 52743158 52743479 -48637042 + L2 LINE L2 2913 3282 -31 1084 207 59 31 chr15 52743777 52744220 -48636301 - LTR56 LTR ERV1 -2 441 9 187 389 80 23 chr15 52744566 52744741 -48635780 - L3 LINE CR1 -13 1564 1380 2474 61 0 0 chr15 52745086 52745380 -48635141 + AluY SINE Alu 17 310 -1 491 216 52 0 chr15 52745632 52745748 -48634773 - MIR SINE MIR -34 228 107 364 95 48 0 chr15 52745817 52745880 -48634641 + L1P LINE L1 3261 3326 -2820 7629 100 17 2 chr15 52745881 52747074 -48633447 + L1P LINE L1 3259 4469 -1677 5846 67 18 43 chr15 52747075 52748141 -48632380 + SVA Other Other 2 866 -520 1204 100 26 112 chr15 52748172 52748592 -48631929 + SVA Other Other 483 866 -520 189 359 0 0 chr15 52748696 52748735 -48631786 + T-rich Low_complexity Low_complexity 1 39 0 3615 174 24 1 chr15 52748851 52749562 -48630959 - L1 LINE L1 -1022 5124 4393 414 39 0 0 chr15 52749562 52749614 -48630907 + (TG)n Simple_repeat Simple_repeat 1 52 0 3615 174 24 1 chr15 52749614 52749661 -48630860 - L1 LINE L1 -1753 4393 4349 22 0 0 0 chr15 52750063 52750085 -48630436 + AT_rich Low_complexity Low_complexity 1 22 0 6560 81 16 8 chr15 52750141 52751407 -48629114 - L1PA10 LINE L1 0 6168 4899 213 39 0 0 chr15 52751414 52751440 -48629081 + (T)n Simple_repeat Simple_repeat 1 26 0 289 252 130 17 chr15 52751443 52751558 -48628963 + MER112 DNA MER1_type 133 260 0 338 266 25 13 chr15 52751599 52751678 -48628843 + MIR3 SINE MIR 81 160 -48 2258 110 0 0 chr15 52751684 52751985 -48628536 - AluSg SINE Alu -8 302 2 434 221 14 131 chr15 52751988 52752133 -48628388 - MER5B DNA MER1_type -1 177 50 6535 72 7 28 chr15 52752146 52753055 -48627466 - SVA Other Other 0 1386 497 21 36 0 0 chr15 52753116 52753144 -48627377 + GC_rich Low_complexity Low_complexity 1 28 0 541 266 164 20 chr15 52753834 52754078 -48626443 + L1M4 LINE L1 105 383 -6159 5239 221 99 23 chr15 52754087 52755147 -48625374 + L1M4 LINE L1 2564 3543 -3101 2506 48 3 0 chr15 52755147 52755442 -48625079 - AluY SINE Alu -15 296 1 5239 221 99 23 chr15 52755442 52756661 -48623860 + L1M4 LINE L1 3543 5034 -1610 1998 138 3 3 chr15 52756693 52756989 -48623532 + AluSx SINE Alu 3 298 -14 613 285 133 51 chr15 52757865 52758458 -48622063 + L1ME4a LINE L1 3204 3845 -2799 767 289 53 31 chr15 52758459 52758869 -48621652 + L1ME4a LINE L1 3914 4335 -2309 1697 153 70 0 chr15 52758869 52759156 -48621365 - AluJo SINE Alu -5 307 1 767 289 53 31 chr15 52759156 52759278 -48621243 + L1ME4a LINE L1 4335 4453 -2191 305 312 52 48 chr15 52759773 52760004 -48620517 + L1ME4a LINE L1 5094 5325 -1319 28 0 0 0 chr15 52760157 52760185 -48620336 + AT_rich Low_complexity Low_complexity 1 28 0 330 289 111 26 chr15 52760528 52760718 -48619803 + L1ME4a LINE L1 6392 6597 -22 1995 136 3 23 chr15 52761363 52761722 -48618799 + AluSx SINE Alu 1 353 0 24 0 0 0 chr15 52761932 52761956 -48618565 + AT_rich Low_complexity Low_complexity 1 24 0 2109 110 3 7 chr15 52762242 52762543 -48617978 - AluSx SINE Alu -3 309 10 545 221 24 0 chr15 52762593 52762720 -48617801 + L1MB5 LINE L1 5905 6034 -140 2325 79 0 16 chr15 52762898 52763201 -48617320 + AluY SINE Alu 1 298 -13 282 284 12 12 chr15 52763456 52763537 -48616984 - MIR3 SINE MIR -31 177 97 498 221 8 8 chr15 52763833 52763955 -48616566 + L1ME3A LINE L1 5318 5439 -731 1031 281 13 50 chr15 52763966 52764430 -48616091 + L1ME3A LINE L1 5741 6166 -4 3330 140 58 3 chr15 52764669 52765255 -48615266 - L1MA5A LINE L1 -70 6227 5610 207 0 0 0 chr15 52765256 52765279 -48615242 + (TCTA)n Simple_repeat Simple_repeat 1 23 0 7470 140 20 11 chr15 52765292 52766736 -48613785 - L1MA3 LINE L1 -5 7719 6244 2215 125 0 0 chr15 52766736 52767048 -48613473 + AluSx SINE Alu 1 312 0 7470 140 20 11 chr15 52767048 52767970 -48612551 - L1MA3 LINE L1 -1480 6244 5332 * 20301 128 35 29 chr15 52767965 52771367 -48609154 - L1MA3 LINE L1 -4134 3431 11 681 133 70 28 chr15 52771350 52771383 -48609138 - L1MA5A LINE L1 -681 5616 5586 * 2398 77 0 0 chr15 52771383 52771680 -48608841 + AluY SINE Alu 2 298 -13 681 133 70 28 chr15 52771680 52771789 -48608732 - L1MA5A LINE L1 -711 5586 5468 42515 35 25 1 chr15 52771916 52777926 -48602595 - L1PA2 LINE L1 0 6155 1 1080 173 41 25 chr15 52778446 52778570 -48601951 + AluJb SINE Alu 86 216 -97 183 80 0 0 chr15 52778570 52778595 -48601926 + (TGGGGG)n Simple_repeat Simple_repeat 1 25 0 1080 173 41 25 chr15 52778595 52778695 -48601826 + AluJb SINE Alu 216 313 0 299 170 150 40 chr15 52778697 52778797 -48601724 - MIR3 SINE MIR -31 177 67 210 71 0 0 chr15 52778954 52778982 -48601539 + (TA)n Simple_repeat Simple_repeat 2 29 0 356 260 83 0 chr15 52778990 52779086 -48601435 + L2 LINE L2 3169 3272 0 194 204 37 37 chr15 52779918 52779972 -48600549 - L3 LINE CR1 -9 1568 1515 230 136 23 0 chr15 52780585 52780629 -48599892 + (TA)n Simple_repeat Simple_repeat 1 45 0 225 179 0 0 chr15 52780632 52780688 -48599833 - L1MC4 LINE L1 -1339 6703 6648 1308 164 47 60 chr15 52783390 52783689 -48596832 - AluJo SINE Alu -8 304 10 1676 145 151 0 chr15 52784548 52784872 -48595649 + L1MB5 LINE L1 5802 6174 0 2282 92 0 0 chr15 52784877 52785171 -48595350 - AluY SINE Alu -17 294 1 233 196 0 22 chr15 52785989 52786035 -48594486 + MLT1J2 LTR MaLR 67 111 -339 1689 70 0 9 chr15 52786098 52786311 -48594210 + AluY SINE Alu 1 211 -100 30820 102 29 62 chr15 52786411 52792748 -48587773 + L1PA7 LINE L1 39 6151 -3 24 53 0 0 chr15 52793241 52793279 -48587242 + AT_rich Low_complexity Low_complexity 1 38 0 526 301 99 37 chr15 52793407 52793823 -48586698 - L1MC/D LINE L1 -2005 5803 5355 964 214 0 5 chr15 52793823 52794010 -48586511 - MER5A DNA MER1_type -1 188 3 526 301 99 37 chr15 52794010 52794048 -48586473 - L1MC/D LINE L1 -2453 5355 5321 633 328 10 0 chr15 52794075 52794386 -48586135 - L1MC/D LINE L1 -881 5265 4952 2291 82 7 0 chr15 52794562 52794853 -48585668 - AluSx SINE Alu -19 293 1 359 322 50 8 chr15 52795147 52795268 -48585253 + MIR SINE MIR 2 127 -135 504 127 0 38 chr15 52795478 52795557 -48584964 - AluJ/FRAM SINE Alu -21 291 216 1170 179 30 5 chr15 52795603 52795804 -48584717 + AluJb SINE Alu 89 294 -18 2397 176 4 26 chr15 52795824 52796285 -48584236 - L1MA7 LINE L1 -152 6139 5689 23 54 0 0 chr15 52799999 52800036 -48580485 + AT_rich Low_complexity Low_complexity 1 37 0 252 271 133 60 chr15 52800493 52800659 -48579862 - L2 LINE L2 -111 3202 3025 665 285 83 32 chr15 52801001 52801254 -48579267 - Charlie8 DNA MER1_type -2141 276 11 1994 133 13 32 chr15 52801903 52802218 -48578303 - MER1B DNA MER1_type 0 339 31 1706 157 25 4 chr15 52802896 52803170 -48577351 - AluJo SINE Alu -32 280 1 632 187 107 20 chr15 52803729 52803879 -48576642 - FRAM SINE Alu -15 161 1 1509 146 4 48 chr15 52804032 52804300 -48576221 + AluJo SINE Alu 40 295 -17 683 268 78 17 chr15 52805015 52805246 -48575275 + MIR SINE MIR 5 249 -13 283 261 176 48 chr15 52805340 52805528 -48574993 - L2 LINE L2 -8 3305 3094 308 265 86 101 chr15 52805631 52806038 -48574483 + MLT1J LTR MaLR 109 509 -2 331 309 47 3 chr15 52806038 52806189 -48574332 - L2 LINE L2 -225 3047 2892 365 316 163 5 chr15 52806455 52806664 -48573857 - MIR SINE MIR -19 243 2 222 37 0 0 chr15 52806672 52806699 -48573822 + (T)n Simple_repeat Simple_repeat 1 27 0 302 304 0 13 chr15 52807251 52807330 -48573191 - L2 LINE L2 -203 3069 2992 801 165 69 69 chr15 52807357 52807575 -48572946 - MER20 DNA MER1_type -1 218 1 1101 185 9 24 chr15 52807583 52807794 -48572727 - MER3 DNA MER1_type 0 209 2 398 354 203 8 chr15 52807851 52808235 -48572286 - L2 LINE L2 -455 2859 2401 1171 241 84 40 chr15 52808287 52808537 -48571984 + MLT1D LTR MaLR 85 361 -144 219 36 0 0 chr15 52808537 52808565 -48571956 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1171 241 84 40 chr15 52808565 52808717 -48571804 + MLT1D LTR MaLR 361 505 0 889 315 111 58 chr15 52808733 52809776 -48570745 - L2 LINE L2 -941 2373 1276 397 332 92 7 chr15 52809831 52810102 -48570419 + L1MEc LINE L1 35 328 -6068 358 272 13 58 chr15 52810310 52810473 -48570048 + L1MEc LINE L1 726 878 -5518 1802 135 3 43 chr15 52810473 52810776 -48569745 + AluSq SINE Alu 1 291 -22 358 272 13 58 chr15 52810776 52810836 -48569685 + L1MEc LINE L1 878 939 -5457 2207 94 0 0 chr15 52810984 52811261 -48569260 + AluSq SINE Alu 15 291 -22 288 238 0 50 chr15 52811261 52811362 -48569159 + L1MEc LINE L1 1018 1113 -5283 1977 126 0 26 chr15 52811434 52811736 -48568785 + AluSc SINE Alu 1 294 -15 2574 231 125 18 chr15 52811762 52812773 -48567748 + L1M4 LINE L1 3951 5069 -1077 241 218 99 10 chr15 52812813 52812914 -48567607 + L1M4 LINE L1 44 153 -6389 759 290 86 43 chr15 52813066 52813679 -48566842 + L1M4 LINE L1 1396 2017 -4629 887 310 67 50 chr15 52813679 52814473 -48566048 + L2 LINE L2 2458 3269 -44 327 330 55 0 chr15 52814702 52814793 -48565728 + L2 LINE L2 3171 3266 -6 239 316 103 69 chr15 52814866 52815040 -48565481 + L2 LINE L2 3088 3267 -5 287 277 0 0 chr15 52815048 52815113 -48565408 + MIR SINE MIR 117 181 -81 405 0 0 0 chr15 52815144 52815189 -48565332 + (CA)n Simple_repeat Simple_repeat 2 46 0 471 160 0 64 chr15 52816799 52816893 -48563628 + Charlie3 DNA MER1_type 2619 2706 -4 829 301 174 35 chr15 52817176 52818627 -48561894 - L1ME3A LINE L1 -231 5922 4196 2021 99 6 64 chr15 52818627 52818940 -48561581 - AluSp SINE Alu -16 297 3 829 301 174 35 chr15 52818940 52819226 -48561295 - L1ME3A LINE L1 -1957 4196 3951 556 255 259 31 chr15 52819238 52819524 -48560997 + L2 LINE L2 2928 3278 -35 299 290 28 52 chr15 52820084 52820332 -48560189 - L1ME3A LINE L1 -3594 2535 2294 348 358 100 52 chr15 52820473 52820931 -48559590 - L1ME3A LINE L1 -5397 722 243 263 242 16 16 chr15 52821198 52821326 -48559195 + (TA)n Simple_repeat Simple_repeat 1 128 0 1933 274 82 42 chr15 52821645 52821815 -48558706 + L1ME3 LINE L1 6 168 -5914 1859 117 4 4 chr15 52821815 52822081 -48558440 - AluSx SINE Alu -13 299 34 1933 274 82 42 chr15 52822081 52823161 -48557360 + L1ME3 LINE L1 168 1203 -4879 355 257 238 0 chr15 52823207 52823413 -48557108 + L1ME3 LINE L1 4775 5029 -1051 2097 95 49 0 chr15 52823433 52823718 -48556803 - AluSx SINE Alu -9 303 5 1291 184 43 16 chr15 52823744 52823999 -48556522 + AluJo SINE Alu 37 298 -14 2071 228 83 21 chr15 52824002 52824819 -48555702 + L1ME3 LINE L1 5077 5951 -145 857 237 109 90 chr15 52824833 52825200 -48555321 + LTR16A LTR ERVL 18 391 -59 400 244 22 33 chr15 52825200 52825290 -48555231 + MER5A DNA MER1_type 3 91 -98 533 228 130 59 chr15 52825290 52825597 -48554924 + HAL1 LINE L1 748 1076 -1431 261 196 167 29 chr15 52825606 52825708 -48554813 + LTR33 LTR ERVL 4 119 -402 21 71 0 0 chr15 52825867 52825909 -48554612 + AT_rich Low_complexity Low_complexity 1 42 0 32 26 0 0 chr15 52829211 52829250 -48551271 + AT_rich Low_complexity Low_complexity 1 39 0 3007 174 55 17 chr15 52829372 52830014 -48550507 + L1MB5 LINE L1 5497 6162 -12 277 292 110 26 chr15 52830219 52830373 -48550148 - MER20 DNA MER1_type -4 215 49 259 130 2 130 chr15 52831137 52831206 -48549315 + MLT1C LTR MaLR 4 67 -307 669 153 146 0 chr15 52831212 52831290 -48549231 + MLT1C LTR MaLR 309 374 -93 207 0 0 0 chr15 52831290 52831313 -48549208 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 669 153 146 0 chr15 52831313 52831371 -48549150 + MLT1C LTR MaLR 374 465 -2 592 305 115 14 chr15 52831389 52832083 -48548438 - L1ME LINE L1 -399 5771 5007 208 299 65 0 chr15 52832185 52832262 -48548259 + L2 LINE L2 3186 3267 -5 750 168 122 10 chr15 52833023 52833220 -48547301 + L1MC5 LINE L1 7250 7468 -493 495 196 135 14 chr15 52833312 52833460 -48547061 + L1MC5 LINE L1 7747 7912 -49 833 144 8 0 chr15 52833483 52833615 -48546906 + FLAM_C SINE Alu 1 133 0 187 216 27 0 chr15 52834317 52834354 -48546167 + MIR SINE MIR 56 93 -169 245 164 279 0 chr15 52834488 52834549 -48545972 - MIR3 SINE MIR -48 160 83 1985 85 29 7 chr15 52835144 52835416 -48545105 + AluSc SINE Alu 23 300 -9 2332 63 0 3 chr15 52836352 52836665 -48543856 + AluY SINE Alu 1 312 0 1206 171 119 0 chr15 52836795 52837081 -48543440 - MER33 DNA MER1_type -3 321 2 1680 186 0 26 chr15 52837125 52837432 -48543089 + AluJo SINE Alu 1 299 -13 4115 77 6 0 chr15 52838069 52838618 -48541903 + MER41A LTR ERV1 3 554 0 2060 124 7 3 chr15 52838623 52838922 -48541599 - AluSx SINE Alu -12 300 1 273 261 166 13 chr15 52839853 52840010 -48540511 - L1ME LINE L1 -687 5477 5297 577 209 30 8 chr15 52840166 52840300 -48540221 + L1MD1 LINE L1 3524 3660 -2486 556 300 16 5 chr15 52840295 52840485 -48540036 + L1MD1 LINE L1 4771 4962 -1184 * 2423 163 17 44 chr15 52840472 52840950 -48539571 + L1MB3 LINE L1 5439 5903 -280 * 4447 124 38 29 chr15 52840940 52841739 -48538782 + L1MA3 LINE L1 5480 6285 -20 1450 171 11 4 chr15 52841784 52842064 -48538457 + L1MB3 LINE L1 5899 6180 -3 617 244 30 10 chr15 52842073 52842274 -48538247 + L1MD1 LINE L1 4943 5147 -999 10572 184 80 25 chr15 52842308 52845500 -48535021 + L1MC1 LINE L1 1 3371 -3055 860 272 47 15 chr15 52845504 52845846 -48534675 + L1MC1 LINE L1 3532 3884 -2542 * 5269 181 49 12 chr15 52845843 52847287 -48533234 + L1MC1 LINE L1 5110 6608 -5 4318 168 40 68 chr15 52847306 52848376 -48532145 + L1MD1 LINE L1 5197 6242 0 776 277 103 40 chr15 52848560 52849037 -48531484 - L1ME LINE L1 -1194 5021 4495 2447 63 0 0 chr15 52849037 52849337 -48531184 + AluY SINE Alu 1 300 -11 776 277 103 40 chr15 52849337 52849480 -48531041 - L1ME LINE L1 -1720 4495 4362 857 205 47 21 chr15 52849640 52849830 -48530691 + MER2 DNA MER2_type 1 195 -150 1305 296 116 21 chr15 52849941 52850317 -48530204 - L1ME LINE L1 -2134 4081 3742 1394 228 221 4 chr15 52850317 52850783 -48529738 - MLT1F1 LTR MaLR 0 567 1 1305 296 116 21 chr15 52850783 52851419 -48529102 - L1ME LINE L1 -2473 3742 2959 665 183 22 51 chr15 52851419 52851556 -48528965 - FLAM_A SINE Alu 0 133 1 1305 296 116 21 chr15 52851556 52851616 -48528905 - L1ME LINE L1 -3256 2959 2906 384 276 94 69 chr15 52851646 52852124 -48528397 - L1MC4 LINE L1 -29 8013 7492 1747 174 26 43 chr15 52852537 52852742 -48527779 - MER2 DNA MER2_type -1 344 146 2142 72 83 3 chr15 52852742 52853032 -48527489 - AluSq SINE Alu 0 313 1 1747 174 26 43 chr15 52853032 52853171 -48527350 - MER2 DNA MER2_type -199 146 6 2592 261 90 41 chr15 52853711 52853970 -48526551 - L1ME LINE L1 -3627 2588 2343 5308 106 32 18 chr15 52853970 52854817 -48525704 - L1PA15 LINE L1 -6 6159 5326 191 36 36 0 chr15 52854817 52854845 -48525676 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2242 84 3 3 chr15 52854845 52855131 -48525390 - AluSq SINE Alu -27 286 1 5308 106 32 18 chr15 52855131 52856029 -48524492 - L1PA15 LINE L1 -838 5327 4403 2592 261 90 41 chr15 52856029 52857550 -48522971 - L1ME LINE L1 -3872 2343 655 353 272 44 57 chr15 52858018 52858176 -48522345 - L1ME LINE L1 -6194 202 47 252 0 0 0 chr15 52859068 52859096 -48521425 + (TG)n Simple_repeat Simple_repeat 1 28 0 212 345 7 29 chr15 52860569 52860708 -48519813 + GA-rich Low_complexity Low_complexity 1 136 0 2624 150 127 22 chr15 52861872 52862950 -48517571 - L1MCa LINE L1 -3912 2516 1228 696 132 16 0 chr15 52863033 52863154 -48517367 + L1MCb LINE L1 991 1113 -4932 1255 161 92 20 chr15 52863359 52863818 -48516703 - MER44D DNA MER2_type -1 604 3 2074 75 0 0 chr15 52863854 52864133 -48516388 - AluY SINE Alu 0 311 33 598 213 69 64 chr15 52864166 52864354 -48516167 - MER5A DNA MER1_type 0 189 1 1335 90 0 23 chr15 52865413 52865590 -48514931 + AluY SINE Alu 1 173 -138 276 379 15 0 chr15 52865737 52865869 -48514652 - L2 LINE L2 -613 2701 2568 2124 131 54 26 chr15 52865871 52866223 -48514298 - THE1B LTR MaLR -2 362 1 10004 95 90 14 chr15 52866223 52867692 -48512829 - THE1B-int LTR MaLR 0 1580 1 2221 121 3 62 chr15 52867692 52868079 -48512442 - THE1B LTR MaLR 0 364 1 197 106 0 43 chr15 52868246 52868293 -48512228 + (AAATG)n Simple_repeat Simple_repeat 3 47 0 1924 104 4 8 chr15 52869773 52870041 -48510480 - AluY SINE Alu -11 300 34 278 299 0 26 chr15 52870275 52870352 -48510169 - MER117 DNA MER1_type -1 196 122 285 290 0 0 chr15 52871750 52871812 -48508709 - MIR3 SINE MIR -32 176 115 1358 145 108 82 chr15 52873365 52873423 -48507098 - MER46B DNA MER2_type -2495 236 181 1966 148 3 0 chr15 52873423 52873728 -48506793 - AluSx SINE Alu -1 311 6 1358 145 108 82 chr15 52873728 52873866 -48506655 - MER46B DNA MER2_type -2550 181 150 1883 109 16 20 chr15 52873866 52874169 -48506352 - AluSq SINE Alu -11 302 1 1358 145 108 82 chr15 52874169 52874323 -48506198 - MER46B DNA MER2_type -2581 150 1 213 39 0 0 chr15 52874583 52874609 -48505912 + (T)n Simple_repeat Simple_repeat 1 26 0 21 36 0 0 chr15 52875385 52875413 -48505108 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr15 52875877 52875900 -48504621 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 52877089 52877111 -48503410 + AT_rich Low_complexity Low_complexity 1 22 0 309 108 31 15 chr15 52877956 52878021 -48502500 + GA-rich Low_complexity Low_complexity 1 66 0 237 290 41 35 chr15 52879041 52879210 -48501311 + L2 LINE L2 2792 2961 -353 23 0 0 0 chr15 52879982 52880005 -48500516 + GC_rich Low_complexity Low_complexity 1 23 0 669 306 78 0 chr15 52880231 52880450 -48500071 - MIR SINE MIR 0 262 27 214 360 140 0 chr15 52881615 52881715 -48498806 + L2 LINE L2 3151 3264 -8 291 382 73 59 chr15 52881840 52882196 -48498325 - L2 LINE L2 -17 3255 2895 182 238 95 71 chr15 52883049 52883133 -48497388 + MIR SINE MIR 64 149 -59 213 373 40 40 chr15 52883574 52883700 -48496821 - L2 LINE L2 -1 3271 3146 218 235 59 44 chr15 52883907 52883975 -48496546 - MER91C DNA MER1_type -39 101 33 342 153 0 0 chr15 52884072 52884131 -48496390 + GA-rich Low_complexity Low_complexity 2 60 0 1912 107 0 22 chr15 52884132 52884403 -48496118 + AluSg1 SINE Alu 41 305 -4 1224 151 56 79 chr15 52885274 52885578 -48494943 - MLT2C1 LTR ERVL -59 338 42 227 67 0 0 chr15 52885576 52885606 -48494915 + MLT2D LTR ERVL 16 45 -369 * 263 337 33 0 chr15 52886904 52886996 -48493525 + L2 LINE L2 3170 3264 -8 655 286 46 18 chr15 52887378 52887595 -48492926 + MIR SINE MIR 27 249 -13 49 71 0 0 chr15 52889341 52889439 -48491082 + AT_rich Low_complexity Low_complexity 1 98 0 881 191 101 0 chr15 52889726 52889894 -48490627 - MER58A DNA MER1_type -1 223 39 234 270 133 19 chr15 52890366 52890577 -48489944 + L1M4 LINE L1 2482 2716 -3430 27 49 0 0 chr15 52890702 52890743 -48489778 + AT_rich Low_complexity Low_complexity 1 41 0 758 313 26 9 chr15 52890763 52890993 -48489528 - MIR SINE MIR -15 247 14 6331 83 10 4 chr15 52891422 52893271 -48487250 - L1PA12 LINE L1 -15 6153 4303 665 202 45 37 chr15 52893273 52893522 -48486999 - L1ME LINE L1 -676 5557 5306 358 157 24 0 chr15 52893526 52893609 -48486912 + (TA)n Simple_repeat Simple_repeat 1 85 0 4171 268 70 35 chr15 52893609 52893785 -48486736 - L1ME LINE L1 -915 5300 5132 1165 193 41 18 chr15 52893785 52894003 -48486518 + MER58A DNA MER1_type 1 223 -1 4171 268 70 35 chr15 52894003 52895996 -48484525 - L1ME LINE L1 -1083 5132 3056 1096 238 97 52 chr15 52896009 52896070 -48484451 - LTR41 LTR ERVL -13 760 703 2056 140 3 0 chr15 52896070 52896363 -48484158 + AluSx SINE Alu 1 294 -18 1096 238 97 52 chr15 52896363 52896704 -48483817 - LTR41 LTR ERVL -70 703 340 745 204 67 53 chr15 52896704 52896929 -48483592 - LTR41 LTR ERVL -545 228 1 277 189 0 0 chr15 52896930 52896983 -48483538 - L1ME LINE L1 -3156 3059 3007 1921 258 61 37 chr15 52896994 52897655 -48482866 - L1MEc LINE L1 -3257 2958 2315 2246 96 7 0 chr15 52897655 52897957 -48482564 - AluSp SINE Alu -9 304 1 1921 258 61 37 chr15 52897957 52898144 -48482377 - L1MEc LINE L1 -3900 2315 2134 3151 227 36 58 chr15 52898185 52899736 -48480785 - L1ME1 LINE L1 -5 6956 5439 1349 222 70 90 chr15 52899732 52899785 -48480736 - L1ME1 LINE L1 -3060 3881 3828 * 1475 176 19 53 chr15 52899785 52900103 -48480418 - AluJo SINE Alu 0 312 6 1349 222 70 90 chr15 52900103 52900725 -48479796 - L1ME1 LINE L1 -3113 3828 3220 1396 128 5 0 chr15 52900762 52900958 -48479563 - AluSx SINE Alu -12 300 104 30939 63 5 3 chr15 52900963 52904276 -48476245 - L1PA6 LINE L1 0 6154 2825 2362 82 0 13 chr15 52904276 52904591 -48475930 - AluY SINE Alu 0 311 1 30939 63 5 3 chr15 52904591 52906118 -48474403 - L1PA6 LINE L1 -3329 2825 1303 832 148 0 0 chr15 52906119 52906234 -48474287 - AluSx SINE Alu -198 115 1 2219 252 70 69 chr15 52906234 52906430 -48474091 - L1ME1 LINE L1 -3748 3193 2999 2876 177 25 31 chr15 52906430 52906494 -48474027 - L1MB5 LINE L1 -3 6171 6108 2131 87 3 17 chr15 52906494 52906792 -48473729 + AluY SINE Alu 1 294 -17 2876 177 25 31 chr15 52906792 52907361 -48473160 - L1MB5 LINE L1 -66 6108 5542 2219 252 70 69 chr15 52907361 52907550 -48472971 - L1ME1 LINE L1 -3942 2999 2812 246 32 0 0 chr15 52907550 52907581 -48472940 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1776 133 29 29 chr15 52907580 52907880 -48472641 - AluSg SINE Alu 0 300 1 2219 252 70 69 chr15 52907880 52909155 -48471366 - L1ME1 LINE L1 -4428 2513 1340 757 119 0 0 chr15 52909171 52909272 -48471249 - U6 snRNA snRNA -6 101 1 1306 259 92 35 chr15 52909277 52909764 -48470757 - L1ME1 LINE L1 -5095 1328 814 602 280 35 17 chr15 52910022 52910254 -48470267 - L1ME1 LINE L1 -5977 446 211 325 214 0 48 chr15 52910254 52910338 -48470183 - L1MEc LINE L1 -4443 2679 2600 558 252 41 56 chr15 52910499 52910769 -48469752 - L1MEc LINE L1 -4756 2366 2101 7003 53 12 10 chr15 52910799 52912325 -48468196 - L1PA8 LINE L1 -2 6170 4631 227 297 98 49 chr15 52912749 52913076 -48467445 - L1MEc LINE L1 -4944 1479 1137 1373 248 40 13 chr15 52913963 52914414 -48466107 - LTR37B LTR ERV1 0 468 6 1551 205 15 15 chr15 52914493 52914861 -48465660 + MER47B DNA MER2_type 1 417 -1 1992 134 20 38 chr15 52915921 52916264 -48464257 + MER1B DNA MER1_type 1 337 0 526 328 26 11 chr15 52916892 52917160 -48463361 + L1ME4a LINE L1 3895 4166 -1980 303 217 29 170 chr15 52917573 52917679 -48462842 + L1ME4a LINE L1 5874 5919 -202 302 0 26 0 chr15 52917679 52917717 -48462804 + (TG)n Simple_repeat Simple_repeat 2 40 0 303 217 29 170 chr15 52917717 52917886 -48462635 + L1ME4a LINE L1 5919 6110 -11 313 269 154 51 chr15 52918132 52918444 -48462077 + L1ME4a LINE L1 4881 5224 -922 623 276 150 42 chr15 52918528 52918795 -48461726 + L1ME4a LINE L1 5358 5595 -526 696 176 7 37 chr15 52918795 52918931 -48461590 - FLAM_C SINE Alu 0 133 2 623 276 150 42 chr15 52918931 52919231 -48461290 + L1ME4a LINE L1 5595 5986 -135 388 275 80 0 chr15 52919481 52919619 -48460902 - L1MEc LINE L1 -3304 3863 3715 250 314 72 14 chr15 52919697 52919920 -48460601 - L1MEc LINE L1 -4576 2772 2537 340 135 0 0 chr15 52919977 52920029 -48460492 - MLT1D LTR MaLR -360 145 94 229 146 0 0 chr15 52920607 52920648 -48459873 + Charlie1 DNA MER1_type 2171 2211 -550 184 301 157 24 chr15 52921417 52921500 -48459021 + L2 LINE L2 2224 2317 -997 652 154 0 0 chr15 52921907 52922011 -48458510 - LTR40a LTR ERVL -16 503 400 4828 141 24 18 chr15 52922030 52922909 -48457612 - L1MA8 LINE L1 -2 6289 5406 2815 296 33 22 chr15 52922950 52924433 -48456088 - L1M4 LINE L1 -4167 3001 1496 1607 184 3 20 chr15 52925095 52925389 -48455132 - AluJb SINE Alu -22 290 2 305 370 37 15 chr15 52925433 52925568 -48454953 - L1M4 LINE L1 -5991 1107 970 391 300 75 17 chr15 52925571 52925691 -48454830 - LTR40a LTR ERVL -108 411 285 1722 97 79 7 chr15 52926067 52926346 -48454175 - L1MA8 LINE L1 -5 6286 5988 720 349 54 20 chr15 52926350 52927253 -48453268 + HERVL LTR ERVL 4320 5287 -367 1334 223 41 74 chr15 52927261 52927678 -48452843 + LTR16A1 LTR ERVL 55 457 0 1587 188 0 7 chr15 52927688 52927970 -48452551 + AluJo SINE Alu 1 280 -32 213 159 0 0 chr15 52928006 52928050 -48452471 + A-rich Low_complexity Low_complexity 1 44 0 1358 233 99 71 chr15 52928094 52928631 -48451890 + MER77 LTR ERV1 52 603 -2 434 265 127 17 chr15 52929786 52929967 -48450554 + MIR SINE MIR 62 262 0 189 121 0 0 chr15 52931452 52931485 -48449036 + (T)n Simple_repeat Simple_repeat 1 33 0 186 43 0 0 chr15 52931658 52931681 -48448840 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2016 122 31 0 chr15 52932152 52932440 -48448081 - AluSx SINE Alu -15 297 1 180 359 28 14 chr15 52932470 52932615 -48447906 + L2 LINE L2 3167 3313 0 253 370 98 16 chr15 52933218 52933464 -48447057 + L2 LINE L2 1713 1978 -1336 19801 161 73 54 chr15 52933589 52935321 -48445200 + L1MA3 LINE L1 24 1721 -6003 528 16 0 0 chr15 52935321 52935382 -48445139 + (GA)n Simple_repeat Simple_repeat 2 62 0 19801 161 73 54 chr15 52935382 52936843 -48443678 + L1MA3 LINE L1 1721 3152 -4572 1658 186 27 0 chr15 52936843 52936956 -48443565 + AluJo SINE Alu 3 111 -201 378 0 0 0 chr15 52936956 52936998 -48443523 + (CA)n Simple_repeat Simple_repeat 2 43 0 1658 186 27 0 chr15 52936998 52937180 -48443341 + AluJo SINE Alu 111 306 -6 19801 161 73 54 chr15 52937180 52939383 -48441138 + L1MA3 LINE L1 3152 5311 -2413 1421 153 0 5 chr15 52939383 52939599 -48440922 - AluJo SINE Alu -37 275 61 19801 161 73 54 chr15 52939599 52941537 -48438984 + L1MA3 LINE L1 5311 7724 0 183 256 0 0 chr15 52942158 52942197 -48438324 - MIR SINE MIR -6 256 218 4618 168 45 10 chr15 52942200 52943804 -48436717 - L1MB7 LINE L1 -5 6248 4599 1870 213 54 22 chr15 52943800 52944336 -48436185 - L1MB7 LINE L1 -2099 4116 3564 * 198 0 0 0 chr15 52944336 52944358 -48436163 + (T)n Simple_repeat Simple_repeat 1 22 0 2359 135 54 92 chr15 52944358 52944785 -48435736 - MER67A LTR ERV1 -29 514 109 2241 125 0 0 chr15 52944785 52945096 -48435425 + AluSq SINE Alu 1 311 -2 2359 135 54 92 chr15 52945096 52945202 -48435319 - MER67A LTR ERV1 -434 109 1 42911 32 21 2 chr15 52945779 52951813 -48428708 - L1PA2 LINE L1 -1 6154 1 4216 229 58 46 chr15 52951793 52953523 -48426998 - L1MB7 LINE L1 -2612 3603 1877 * 1064 189 0 11 chr15 52954905 52955111 -48425410 - MLT1A2 LTR MaLR 0 390 188 218 116 23 0 chr15 52955116 52955159 -48425362 + GA-rich Low_complexity Low_complexity 2 45 0 277 164 27 41 chr15 52955205 52955278 -48425243 - MLT1A2 LTR MaLR -222 168 97 390 220 127 0 chr15 52955337 52955455 -48425066 + MER94 DNA DNA 1 133 -1 582 269 14 33 chr15 52956505 52956717 -48423804 + L1ME1 LINE L1 5941 6148 -18 575 324 106 8 chr15 52956726 52957047 -48423474 - L2 LINE L2 -317 2996 2633 438 339 33 6 chr15 52957227 52957410 -48423111 - L2 LINE L2 -2050 1264 1077 824 158 0 6 chr15 52958275 52958433 -48422088 + GA-rich Low_complexity Low_complexity 3 159 0 312 253 127 40 chr15 52959795 52959945 -48420576 - MIR3 SINE MIR -6 202 40 441 298 75 63 chr15 52960715 52960967 -48419554 - L3 LINE CR1 -87 1490 1236 32 75 0 0 chr15 52961033 52961100 -48419421 + AT_rich Low_complexity Low_complexity 1 67 0 656 298 59 4 chr15 52961162 52961400 -48419121 - LTR16C LTR ERVL 0 491 241 907 83 8 0 chr15 52961561 52961682 -48418839 + L1PB1 LINE L1 6029 6150 -1 259 235 184 28 chr15 52961700 52961955 -48418566 - L1ME4a LINE L1 -121 6000 5706 21010 157 47 9 chr15 52962062 52966401 -48414120 + L1MA3 LINE L1 9 4520 -3045 7678 18 1 0 chr15 52966374 52967266 -48413255 + L1PA2 LINE L1 6680 7572 -2 * 11895 144 22 6 chr15 52967260 52970438 -48410083 + L1MA3 LINE L1 4492 7724 0 229 150 25 0 chr15 52970827 52970867 -48409654 - LTR16A LTR ERVL 0 450 410 1149 195 43 102 chr15 52970867 52971241 -48409280 + MLT1A1 LTR MaLR 1 352 -13 1105 270 73 29 chr15 52971247 52971628 -48408893 - LTR16A LTR ERVL -35 415 18 879 333 32 36 chr15 52971810 52972032 -48408489 - HERV16 LTR ERVL -414 5350 5129 3083 111 150 0 chr15 52972032 52972584 -48407937 + LTR24C LTR ERV1 1 635 0 879 333 32 36 chr15 52972584 52972859 -48407662 - HERV16 LTR ERVL -635 5129 4855 389 283 41 21 chr15 52972995 52973140 -48407381 - HERV16 LTR ERVL -868 4617 4470 1560 314 92 36 chr15 52973207 52973270 -48407251 - HERV16 LTR ERVL -2283 2713 2655 2146 120 0 3 chr15 52973270 52973562 -48406959 + AluSq SINE Alu 1 291 -22 1560 314 92 36 chr15 52973562 52973736 -48406785 - HERV16 LTR ERVL -2341 2655 2492 2432 93 0 0 chr15 52973736 52974048 -48406473 + AluSx SINE Alu 1 312 0 1560 314 92 36 chr15 52974048 52974291 -48406230 - HERV16 LTR ERVL -2504 2492 2264 1815 173 65 6 chr15 52974291 52974632 -48405889 + MLT1A1 LTR MaLR 4 364 -1 1560 314 92 36 chr15 52974632 52975075 -48405446 - HERV16 LTR ERVL -2732 2264 1925 1041 317 89 39 chr15 52975114 52975733 -48404788 - HERV16 LTR ERVL -3886 1110 461 323 222 56 24 chr15 52976155 52976281 -48404240 - LTR16A1 LTR ERVL 0 457 328 22 35 0 0 chr15 52976321 52976350 -48404171 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr15 52976411 52976432 -48404089 + AT_rich Low_complexity Low_complexity 1 21 0 601 217 70 0 chr15 52976834 52976977 -48403544 - MIR SINE MIR -32 230 78 1411 239 42 21 chr15 52977777 52978303 -48402218 + L1M4 LINE L1 2880 3416 -2730 4800 144 20 69 chr15 52978308 52979293 -48401228 + L1MB8 LINE L1 5183 6148 -30 208 286 0 16 chr15 52979609 52979672 -48400849 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 402 115 0 0 chr15 52979674 52979735 -48400786 + (TA)n Simple_repeat Simple_repeat 2 62 0 718 162 0 8 chr15 52980107 52980224 -48400297 - FLAM_A SINE Alu -17 116 1 3538 259 18 37 chr15 52981332 52982616 -48397905 + L1M4 LINE L1 4103 5362 -784 1032 193 19 5 chr15 52982625 52982838 -48397683 + L1MD1 LINE L1 6008 6223 -19 1132 269 82 50 chr15 52983017 52983674 -48396847 - L1MDa LINE L1 -4515 1565 888 2011 249 95 18 chr15 52983689 52984308 -48396213 - L1MDa LINE L1 -5307 763 97 239 296 0 16 chr15 52984315 52984440 -48396081 + (TATATG)n Simple_repeat Simple_repeat 6 128 0 270 197 105 13 chr15 52984451 52984527 -48395994 - L1MDa LINE L1 -5982 88 6 379 321 66 96 chr15 52984539 52984841 -48395680 + L2 LINE L2 2969 3261 -11 2054 120 0 27 chr15 52986888 52987188 -48393333 - AluSx SINE Alu -20 292 1 21 0 0 0 chr15 52987389 52987410 -48393111 + AT_rich Low_complexity Low_complexity 1 21 0 301 253 90 48 chr15 52989043 52989209 -48391312 + L1M4 LINE L1 2244 2416 -3730 710 207 88 72 chr15 52989251 52989585 -48390936 + HsTC2 DNA Tc2 11 1677 -221 1093 246 51 10 chr15 52989593 52989958 -48390563 - L1ME1 LINE L1 -4 6145 5549 * 2029 210 105 88 chr15 52989952 52990963 -48389558 - L1ME1 LINE L1 -1164 4965 3938 298 305 35 30 chr15 52991087 52991290 -48389231 - L1ME1 LINE L1 -4485 1644 1441 869 280 96 47 chr15 52991901 52992718 -48387803 - L1ME1 LINE L1 -4837 1473 573 722 180 54 14 chr15 52993072 52993318 -48387203 - L1MC2 LINE L1 -3 7764 7529 2247 120 27 27 chr15 52993318 52993693 -48386828 + THE1C LTR MaLR 1 375 0 722 180 54 14 chr15 52993693 52993816 -48386705 - L1MC2 LINE L1 -238 7529 6110 2018 147 48 44 chr15 52993826 52994281 -48386240 - L1MB4 LINE L1 -1 6179 5723 3282 242 56 1 chr15 52994296 52995209 -48385312 - L1MEc LINE L1 -1904 4478 3516 1506 266 55 28 chr15 52995221 52995691 -48384830 + MER74B LTR ERVL 66 548 -74 969 247 101 21 chr15 52995740 52996214 -48384307 - L1MEc LINE L1 -2865 3517 3006 1545 188 92 62 chr15 52996215 52996663 -48383858 + MLT1C LTR MaLR 2 462 -5 1688 239 52 4 chr15 52996663 52997141 -48383380 - L1MEc LINE L1 -3368 3014 2514 2781 165 37 78 chr15 52997177 52997903 -48382618 - L1MB8 LINE L1 -2 6176 5481 650 110 0 0 chr15 52997904 52997995 -48382526 - AluSx SINE Alu -16 293 203 871 75 0 0 chr15 52997997 52998104 -48382417 - AluSx SINE Alu -206 107 1 1831 178 53 63 chr15 52998105 52998289 -48382232 - L1MB8 LINE L1 -692 5486 5302 1652 155 6 65 chr15 52998289 52998612 -48381909 - AluJo SINE Alu -3 309 6 1831 178 53 63 chr15 52998612 52998776 -48381745 - L1MB8 LINE L1 -876 5302 5138 2253 112 3 0 chr15 52998776 52999088 -48381433 - AluSp SINE Alu 0 313 1 1831 178 53 63 chr15 52999088 52999427 -48381094 - L1MB8 LINE L1 -1040 5138 4804 702 294 104 5 chr15 52999439 52999660 -48380861 - MIR SINE MIR -15 247 5 249 312 152 60 chr15 53000719 53001068 -48379453 + L2 LINE L2 2553 2933 -381 364 281 129 6 chr15 53001104 53001282 -48379239 + L2 LINE L2 3039 3238 -75 267 289 164 41 chr15 53002249 53002914 -48377607 - L1MB8 LINE L1 -1548 4598 3852 1098 303 119 39 chr15 53002927 53003789 -48376732 - L1MB8 LINE L1 -2360 3786 2856 892 171 7 0 chr15 53003846 53003992 -48376529 - AluJb SINE Alu -32 280 134 1535 139 93 19 chr15 53003992 53004250 -48376271 - AluJb SINE Alu -15 297 21 230 289 59 13 chr15 53004268 53004420 -48376101 - L1MB8 LINE L1 -3338 2808 2650 327 258 98 78 chr15 53004610 53004927 -48375594 - L1MEc LINE L1 -3928 2456 2189 360 309 108 20 chr15 53005014 53005218 -48375303 - L1MEc LINE L1 -4634 1929 1708 492 245 70 77 chr15 53005420 53005490 -48375031 - L1MEc LINE L1 -4900 1472 1403 1922 124 31 3 chr15 53005490 53005781 -48374740 - AluSx SINE Alu -11 301 3 492 245 70 77 chr15 53005781 53006037 -48374484 - L1MEc LINE L1 -4969 1403 1148 21 0 0 0 chr15 53006120 53006141 -48374380 + AT_rich Low_complexity Low_complexity 1 21 0 346 363 53 37 chr15 53006192 53006437 -48374084 - L1MEc LINE L1 -5368 1004 756 233 335 66 16 chr15 53006601 53006783 -48373738 - L1MEc LINE L1 -5919 453 263 225 175 0 0 chr15 53008279 53008319 -48372202 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 47 82 0 0 chr15 53008670 53008780 -48371741 + AT_rich Low_complexity Low_complexity 1 110 0 5763 131 0 0 chr15 53009043 53010361 -48370160 - L1MA2 LINE L1 0 6304 4945 4312 31 0 0 chr15 53010361 53010868 -48369653 + L1PA3 LINE L1 5645 6152 -3 20907 157 39 20 chr15 53010877 53013420 -48367101 - L1M1 LINE L1 -630 7093 4599 1831 171 10 3 chr15 53013420 53013729 -48366792 + AluJb SINE Alu 1 311 -1 20907 157 39 20 chr15 53013729 53018120 -48362401 - L1M1 LINE L1 -3124 4599 16 189 254 131 54 chr15 53018769 53018899 -48361622 - MIR SINE MIR 0 262 123 1503 201 23 23 chr15 53019560 53019903 -48360618 - L1M4 LINE L1 -1062 5084 4742 2249 233 51 8 chr15 53020555 53021087 -48359434 + L1ME1 LINE L1 5612 6166 0 210 299 126 0 chr15 53021089 53021176 -48359345 - L2 LINE L2 -19 3253 3156 705 222 58 1 chr15 53022327 53022501 -48358020 - MER58B DNA MER1_type -2 339 3 383 294 52 44 chr15 53022581 53022717 -48357804 - L2 LINE L2 0 3272 3136 21 36 0 0 chr15 53024709 53024737 -48355784 + AT_rich Low_complexity Low_complexity 1 28 0 1566 71 44 4 chr15 53024907 53025133 -48355388 + L1MA1 LINE L1 6068 6302 0 25 0 0 0 chr15 53025753 53025778 -48354743 + AT_rich Low_complexity Low_complexity 1 25 0 465 209 55 66 chr15 53026153 53026335 -48354186 + L1MC5 LINE L1 7752 7931 -30 355 320 0 8 chr15 53026724 53026815 -48353706 + MIR3 SINE MIR 85 176 -32 2698 100 51 5 chr15 53026815 53027224 -48353297 - MSTA LTR MaLR 0 428 1 355 320 0 8 chr15 53027224 53027254 -48353267 + MIR3 SINE MIR 176 205 -3 315 272 33 0 chr15 53028346 53028438 -48352083 + HsTC2 DNA Tc2 3 97 -1801 438 313 68 6 chr15 53028440 53028603 -48351918 - L1MEd LINE L1 -5472 647 475 298 203 116 0 chr15 53028707 53028776 -48351745 + HsTC2 DNA Tc2 1824 1900 0 4194 159 52 25 chr15 53029611 53030668 -48349853 - L1MB8 LINE L1 -1 6177 5091 967 241 38 8 chr15 53030948 53031213 -48349308 - L1ME1 LINE L1 -18 6148 5876 2042 148 77 0 chr15 53031241 53031579 -48348942 + THE1B LTR MaLR 1 364 0 4889 90 3 1 chr15 53031579 53032243 -48348278 + THE1B-int LTR MaLR 1 665 -915 364 102 0 0 chr15 53032224 53032283 -48348238 + THE1B-int LTR MaLR 1521 1579 -1 * 2228 114 84 0 chr15 53032283 53032617 -48347904 + THE1B LTR MaLR 3 364 0 339 176 14 27 chr15 53032639 53032713 -48347808 - L1MD2 LINE L1 -529 5830 5758 229 250 19 0 chr15 53032740 53032792 -48347729 + MER3 DNA MER1_type 36 88 -121 * 1073 167 115 45 chr15 53032759 53033046 -48347475 + MER33 DNA MER1_type 9 315 -9 1069 77 0 0 chr15 53033493 53033623 -48346898 + AluYb8 SINE Alu 1 130 -188 37485 86 10 11 chr15 53033633 53039785 -48340736 + L1PA6 LINE L1 11 6152 -2 1294 74 26 26 chr15 53039787 53039976 -48340545 + AluYa5 SINE Alu 120 308 -3 355 229 84 0 chr15 53039987 53040070 -48340451 - MIR SINE MIR -153 109 20 2954 236 71 56 chr15 53040590 53041939 -48338582 - L1ME1 LINE L1 -5 6161 4795 860 275 19 28 chr15 53041942 53042262 -48338259 - L1ME1 LINE L1 -2590 3556 3240 3356 270 144 38 chr15 53042318 53043558 -48336963 + L2 LINE L2 1283 2391 -922 2397 68 3 0 chr15 53043558 53043853 -48336668 + AluY SINE Alu 1 296 -15 3356 270 144 38 chr15 53043853 53044148 -48336373 + L2 LINE L2 2391 2653 -660 1728 186 17 3 chr15 53044148 53044439 -48336082 - AluJb SINE Alu -17 295 1 3356 270 144 38 chr15 53044439 53044739 -48335782 + L2 LINE L2 2653 3313 0 188 204 23 23 chr15 53044806 53044850 -48335671 - MIR3 SINE MIR -157 51 8 202 204 23 0 chr15 53045343 53045387 -48335134 - L2 LINE L2 -1893 1421 1377 281 313 79 111 chr15 53045863 53046243 -48334278 - L2 LINE L2 -5 3267 2900 180 0 0 0 chr15 53046816 53046836 -48333685 + (TG)n Simple_repeat Simple_repeat 2 21 0 222 290 14 29 chr15 53047298 53047367 -48333154 - L2 LINE L2 0 3313 3246 202 235 20 39 chr15 53047399 53047450 -48333071 + MIR SINE MIR 97 146 -62 973 139 14 0 chr15 53047465 53047609 -48332912 - MER5A DNA MER1_type 0 189 44 321 250 12 62 chr15 53047621 53047701 -48332820 + L2 LINE L2 3196 3271 -1 21 36 0 0 chr15 53047802 53047830 -48332691 + AT_rich Low_complexity Low_complexity 1 28 0 294 154 21 21 chr15 53047830 53047973 -48332548 + (TTAA)n Simple_repeat Simple_repeat 1 143 0 30 69 0 0 chr15 53047976 53048034 -48332487 + AT_rich Low_complexity Low_complexity 1 58 0 1460 148 34 10 chr15 53048034 53048332 -48332189 - L1MB2 LINE L1 -3 6168 5864 195 304 80 24 chr15 53048357 53048482 -48332039 + L3 LINE CR1 637 768 -809 16678 165 25 7 chr15 53048887 53053140 -48327381 - L1PA14 LINE L1 0 6161 1833 1419 84 0 0 chr15 53053140 53053318 -48327203 + AluY SINE Alu 128 305 -6 969 229 120 27 chr15 53053539 53053914 -48326607 - L1MEc LINE L1 -1465 4750 4341 535 244 62 19 chr15 53053932 53054092 -48326429 - MER58C DNA MER1_type -6 209 43 3483 227 82 59 chr15 53054093 53054935 -48325586 - L1MEc LINE L1 -2178 4037 3143 2212 108 0 19 chr15 53054935 53055251 -48325270 - AluSg SINE Alu 0 310 1 3483 227 82 59 chr15 53055251 53055939 -48324582 - L1MEc LINE L1 -3072 3143 2472 764 156 0 88 chr15 53055971 53056131 -48324390 - MER46A DNA MER2_type -90 146 1 299 206 31 10 chr15 53056137 53056234 -48324287 - L1MEc LINE L1 -3793 2422 2324 4029 26 0 0 chr15 53056276 53056742 -48323779 - L1PA3 LINE L1 -167 5988 5523 1342 35 0 35 chr15 53056742 53056910 -48323611 + L1PA3 LINE L1 5987 6152 -3 816 219 204 3 chr15 53056925 53057282 -48323239 - L1MEc LINE L1 -4086 2310 1882 2412 151 40 11 chr15 53057291 53057767 -48322754 - L1MB2 LINE L1 -2 6169 5680 2064 223 90 57 chr15 53057793 53058164 -48322357 - L1M4 LINE L1 -3064 3318 2961 981 160 34 55 chr15 53058164 53058401 -48322120 - L1MB8 LINE L1 -13 6165 5934 2064 223 90 57 chr15 53058401 53058420 -48322101 - L1M4 LINE L1 -3421 2961 2944 1224 89 58 5 chr15 53058420 53058611 -48321910 - L1PB1 LINE L1 -1 6150 5950 2064 223 90 57 chr15 53058611 53059247 -48321274 - L1M4 LINE L1 -3438 2944 2251 3590 229 103 32 chr15 53059250 53060637 -48319884 - L1M4 LINE L1 -4259 2125 542 489 284 57 83 chr15 53060765 53061188 -48319333 - L1M3d LINE L1 -5479 412 1 219 36 0 0 chr15 53061241 53061269 -48319252 + (CA)n Simple_repeat Simple_repeat 2 29 0 290 213 0 0 chr15 53061335 53061396 -48319125 - L1MEc LINE L1 -4631 1765 1705 363 330 54 15 chr15 53061691 53061894 -48318627 - L1MEc LINE L1 -5772 433 223 22 35 0 0 chr15 53062756 53062785 -48317736 + AT_rich Low_complexity Low_complexity 1 29 0 1791 164 4 0 chr15 53064842 53065122 -48315399 - AluJb SINE Alu -31 281 1 1585 144 68 0 chr15 53065505 53065755 -48314766 + AluSx SINE Alu 1 267 -45 215 326 15 59 chr15 53065810 53065945 -48314576 - MIR SINE MIR -64 144 16 31 0 0 0 chr15 53066248 53066279 -48314242 + AT_rich Low_complexity Low_complexity 1 31 0 211 296 0 0 chr15 53066406 53066450 -48314071 - L2 LINE L2 -8 3305 3262 249 189 176 0 chr15 53066637 53066711 -48313810 + MLT1J LTR MaLR 419 505 -6 438 137 0 27 chr15 53067314 53067387 -48313134 - 5S rRNA rRNA -20 101 31 1664 39 0 43 chr15 53067825 53068055 -48312466 + L1PA8 LINE L1 5947 6166 -6 402 364 96 0 chr15 53068200 53068409 -48312112 + L2 LINE L2 2594 2822 -492 289 245 116 45 chr15 53068447 53068602 -48311919 + L2 LINE L2 3133 3298 -15 219 217 22 0 chr15 53068654 53068700 -48311821 + L2 LINE L2 3220 3266 -6 2921 231 73 41 chr15 53069662 53070687 -48309834 + L1MD1 LINE L1 2873 3930 -2216 * 21617 47 3 14 chr15 53070679 53073502 -48307019 + L1P LINE L1 2591 5381 -765 3242 201 61 74 chr15 53073500 53075378 -48305143 + L1MD1 LINE L1 4073 5937 -305 * 816 167 36 42 chr15 53075405 53075597 -48304924 - L1MB7 LINE L1 -326 5858 5668 2537 232 57 55 chr15 53075600 53076095 -48304426 - L1MDa LINE L1 -3090 3450 2951 5184 140 15 25 chr15 53076095 53076354 -48304167 + L1PA15 LINE L1 5056 5316 -849 2377 72 0 22 chr15 53076354 53076672 -48303849 + AluY SINE Alu 1 311 0 5184 140 15 25 chr15 53076672 53077531 -48302990 + L1PA15 LINE L1 5316 6165 0 2537 232 57 55 chr15 53077531 53077994 -48302527 - L1MDa LINE L1 -3589 2951 2490 26 30 0 0 chr15 53078160 53078193 -48302328 + AT_rich Low_complexity Low_complexity 1 33 0 249 281 35 0 chr15 53078579 53078636 -48301885 - L2 LINE L2 0 3272 3214 384 183 207 0 chr15 53078937 53079019 -48301502 - MIR SINE MIR -4 258 160 268 191 0 0 chr15 53080273 53080315 -48300206 - MIR SINE MIR -56 152 111 21 36 0 0 chr15 53081110 53081138 -48299383 + AT_rich Low_complexity Low_complexity 1 28 0 574 197 53 15 chr15 53081622 53081754 -48298767 - MER105 DNA DNA -41 163 27 1121 248 118 14 chr15 53081769 53082270 -48298251 - L1M4 LINE L1 -1328 5316 4764 585 189 30 15 chr15 53082270 53082402 -48298119 - L1MA10 LINE L1 -10 6324 6191 1460 238 61 16 chr15 53082420 53082865 -48297656 - L1ME2 LINE L1 -142 6022 5558 2868 134 41 6 chr15 53082867 53083352 -48297169 - L1PA16 LINE L1 -3 6163 5662 2135 124 0 3 chr15 53083371 53083677 -48296844 - AluSx SINE Alu -7 305 1 2005 293 126 23 chr15 53083678 53083945 -48296576 - L1M4 LINE L1 -1890 4754 4516 2837 3 0 0 chr15 53083945 53084256 -48296265 - AluYa5 SINE Alu 0 311 1 2005 293 126 23 chr15 53084256 53085159 -48295362 - L1M4 LINE L1 -2128 4516 3463 3813 208 66 10 chr15 53085186 53086089 -48294432 - L1MB4 LINE L1 0 6180 5231 424 250 91 40 chr15 53086254 53086430 -48294091 - L1M4 LINE L1 -6294 248 64 337 178 0 0 chr15 53086514 53086587 -48293934 - L1MB4 LINE L1 -3170 2976 2904 239 200 0 36 chr15 53086600 53086655 -48293866 + Tigger5 DNA MER2_type 28 80 -2243 272 167 0 0 chr15 53086712 53086754 -48293767 + Tigger5 DNA MER2_type 2282 2323 0 460 323 5 5 chr15 53086757 53086955 -48293566 - L1MB4 LINE L1 -3246 2900 2703 2596 168 51 38 chr15 53087064 53087452 -48293069 - MER68 LTR ERV1 0 562 163 2414 78 0 0 chr15 53087452 53087760 -48292761 - AluY SINE Alu -3 308 1 2596 168 51 38 chr15 53087760 53087924 -48292597 - MER68 LTR ERV1 -399 163 3 382 310 39 75 chr15 53089068 53089153 -48291368 - L1MEc LINE L1 -4759 1551 1465 1805 82 11 15 chr15 53089153 53089421 -48291100 - L1MA2 LINE L1 0 6304 6038 382 310 39 75 chr15 53089421 53089590 -48290931 - L1MEc LINE L1 -4845 1465 1306 290 281 53 61 chr15 53089605 53089833 -48290688 - L1MEc LINE L1 -4918 1201 976 281 135 77 0 chr15 53089849 53089901 -48290620 - L1ME3A LINE L1 -11 6159 6104 189 0 0 0 chr15 53090196 53090217 -48290304 + (A)n Simple_repeat Simple_repeat 1 21 0 545 313 156 18 chr15 53090542 53090868 -48289653 + L3 LINE CR1 917 1287 -290 245 352 65 19 chr15 53090947 53091055 -48289466 + L3 LINE CR1 1442 1554 -23 1159 247 36 62 chr15 53091640 53092256 -48288265 - L1MC5 LINE L1 -48 7913 7314 2907 152 44 22 chr15 53092266 53092486 -48288035 + L1MD2 LINE L1 5377 5591 -768 1621 164 35 11 chr15 53092486 53092773 -48287748 + AluJo SINE Alu 1 294 -18 2907 152 44 22 chr15 53092773 53093100 -48287421 + L1MD2 LINE L1 5591 5936 -423 607 138 28 0 chr15 53093120 53093229 -48287292 - L1MB7 LINE L1 -19 6165 6054 3434 150 29 24 chr15 53093237 53093863 -48286658 - L1MC1 LINE L1 -5 6328 5700 2441 149 12 19 chr15 53094006 53094430 -48286091 - L1MB7 LINE L1 -121 6063 5643 726 160 17 0 chr15 53094433 53094552 -48285969 + MLT1E3 LTR MaLR 504 624 0 409 155 36 12 chr15 53094554 53094638 -48285883 + L1MC4 LINE L1 7542 7627 -415 2173 113 3 22 chr15 53094658 53094976 -48285545 + AluSp SINE Alu 1 312 -1 252 0 0 0 chr15 53094976 53095004 -48285517 + (TA)n Simple_repeat Simple_repeat 2 29 0 1875 143 84 62 chr15 53095009 53095379 -48285142 - LTR24 LTR ERV1 -42 425 48 992 198 85 27 chr15 53095379 53095637 -48284884 + L1MD3 LINE L1 7713 7985 -10 653 247 47 12 chr15 53095641 53095811 -48284710 + L1MC4a LINE L1 6609 6784 -1024 1262 234 73 52 chr15 53095847 53096270 -48284251 - MLT2B1 LTR ERVL -88 432 1 548 199 86 59 chr15 53096270 53096347 -48284174 + L1MC4 LINE L1 6872 6945 -1097 2190 115 0 0 chr15 53096347 53096651 -48283870 + AluSx SINE Alu 1 304 -8 548 199 86 59 chr15 53096651 53096759 -48283762 + L1MC4 LINE L1 6945 7062 -980 713 216 0 55 chr15 53096948 53097129 -48283392 - FRAM SINE Alu 0 40 1 269 145 40 57 chr15 53097135 53097225 -48283296 + L1MC5 LINE L1 7097 7191 -770 550 290 85 30 chr15 53097271 53097864 -48282657 + L1MC5 LINE L1 7268 7778 -183 182 278 37 19 chr15 53098317 53098371 -48282150 - L2 LINE L2 -4 3268 3214 * 695 293 63 5 chr15 53098337 53098467 -48282054 - MIR SINE MIR -19 243 93 2282 90 3 0 chr15 53098467 53098766 -48281755 + AluSg SINE Alu 1 300 -10 695 293 63 5 chr15 53098766 53098857 -48281664 - MIR SINE MIR -169 93 9 358 194 148 56 chr15 53099384 53099492 -48281029 - MIR SINE MIR -95 167 50 225 65 0 0 chr15 53099545 53099576 -48280945 + (CCA)n Simple_repeat Simple_repeat 3 33 0 183 42 0 0 chr15 53100550 53100574 -48279947 + (C)n Simple_repeat Simple_repeat 1 24 0 401 242 67 0 chr15 53100920 53101040 -48279481 + L1MCa LINE L1 20 147 -6279 1181 139 49 67 chr15 53101628 53101861 -48278660 - L1MC2 LINE L1 -11 6333 6104 1814 136 68 0 chr15 53101861 53102141 -48278380 - AluSx SINE Alu -11 301 3 1181 139 49 67 chr15 53102141 53102174 -48278347 - L1MC2 LINE L1 -240 6104 6072 438 238 0 0 chr15 53102176 53102260 -48278261 + FRAM/FAM SINE Alu 1 84 -92 1733 148 3 16 chr15 53102260 53102563 -48277958 - L1MC2 LINE L1 -258 6086 5788 26 74 0 0 chr15 53102565 53102619 -48277902 + AT_rich Low_complexity Low_complexity 1 54 0 232 207 0 17 chr15 53104119 53104177 -48276344 + (TA)n Simple_repeat Simple_repeat 2 58 0 189 147 0 0 chr15 53104736 53104770 -48275751 + (GA)n Simple_repeat Simple_repeat 1 34 0 230 329 239 12 chr15 53104929 53105109 -48275412 - MIR SINE MIR -13 249 35 477 203 24 123 chr15 53105140 53105352 -48275169 - MER112 DNA MER1_type -62 198 8 273 57 0 0 chr15 53106252 53106287 -48274234 + (A)n Simple_repeat Simple_repeat 1 35 0 532 247 36 6 chr15 53106574 53106740 -48273781 - MER104 DNA Tc2 -4 176 6 294 303 0 10 chr15 53106968 53107067 -48273454 - LTR16B LTR ERVL 0 464 367 510 318 91 55 chr15 53107093 53107401 -48273120 - LTR16B LTR ERVL -145 319 1 461 264 18 9 chr15 53107987 53108097 -48272424 + MIR3 SINE MIR 87 197 -11 235 359 13 0 chr15 53108159 53108237 -48272284 - L3 LINE CR1 -1175 402 324 2139 94 30 3 chr15 53108734 53109031 -48271490 - AluSq SINE Alu -8 305 1 256 289 106 0 chr15 53109537 53109679 -48270842 - L1M4 LINE L1 -934 5212 5056 260 229 52 52 chr15 53109688 53109784 -48270737 - L1M4 LINE L1 -1141 5005 4910 512 280 99 16 chr15 53109806 53110181 -48270340 - L1M4 LINE L1 -1363 4783 4378 828 326 80 10 chr15 53110232 53110646 -48269875 - LTR33 LTR ERVL -77 444 2 271 274 19 19 chr15 53110671 53110777 -48269744 - L1M4 LINE L1 -1794 4352 4247 7564 27 2 0 chr15 53110785 53112131 -48268390 - L1PA4 LINE L1 -3 6152 4807 230 210 253 43 chr15 53112305 53112491 -48268030 - L1ME4a LINE L1 0 6121 5897 619 250 14 7 chr15 53112597 53112741 -48267780 - MLT1D LTR MaLR -42 463 319 590 249 96 50 chr15 53112968 53113269 -48267252 - L1MEd LINE L1 -5262 857 543 4258 179 49 19 chr15 53113590 53114400 -48266121 + L1MB3 LINE L1 4934 5718 -465 186 43 0 0 chr15 53114400 53114423 -48266098 + (CA)n Simple_repeat Simple_repeat 2 24 0 4258 179 49 19 chr15 53114423 53114640 -48265881 + L1MB3 LINE L1 5718 6005 -178 2152 76 0 28 chr15 53114640 53114996 -48265525 - AluY SINE Alu 0 348 1 4258 179 49 19 chr15 53114996 53115132 -48265389 + L1MB3 LINE L1 6005 6135 -48 2433 64 0 0 chr15 53115138 53115444 -48265077 + AluY SINE Alu 1 306 0 21 0 0 0 chr15 53115444 53115465 -48265056 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr15 53116223 53116259 -48264262 + AT_rich Low_complexity Low_complexity 1 36 0 253 95 95 0 chr15 53116326 53116368 -48264153 + L2 LINE L2 3268 3313 0 24 0 0 0 chr15 53116632 53116656 -48263865 + AT_rich Low_complexity Low_complexity 1 24 0 2240 115 0 0 chr15 53116801 53117105 -48263416 - AluY SINE Alu -7 304 1 2696 25 0 25 chr15 53117125 53117444 -48263077 - AluY SINE Alu 0 311 1 394 305 86 25 chr15 53117739 53117936 -48262585 - MIR SINE MIR 0 262 54 2414 76 0 7 chr15 53118854 53119157 -48261364 + AluY SINE Alu 1 301 -10 677 257 39 12 chr15 53119335 53119620 -48260901 + LTR16A LTR ERVL 52 384 -66 928 169 19 0 chr15 53119620 53119774 -48260747 + THE1C LTR MaLR 1 157 -218 418 243 47 12 chr15 53119775 53119944 -48260577 + (ACATG)n Simple_repeat Simple_repeat 1 175 0 397 143 182 0 chr15 53119944 53120021 -48260500 + THE1C LTR MaLR 136 226 -149 6822 112 53 8 chr15 53120032 53121032 -48259489 + THE1C-int LTR MaLR 1 1045 -535 1180 86 11 11 chr15 53121030 53121205 -48259316 + THE1C-int LTR MaLR 1405 1579 -1 * 2589 131 3 3 chr15 53121207 53121581 -48258940 + THE1C LTR MaLR 2 375 0 306 229 0 0 chr15 53121582 53121643 -48258878 + LTR16A LTR ERVL 381 441 -9 183 42 0 0 chr15 53121988 53122012 -48258509 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1272 281 137 27 chr15 53122499 53123523 -48256998 - L2 LINE L2 -4 3309 2110 514 259 29 11 chr15 53123524 53123698 -48256823 - MER5B DNA MER1_type -1 177 1 630 190 25 16 chr15 53123717 53123838 -48256683 + FRAM SINE Alu 32 153 -23 491 287 117 20 chr15 53123867 53123997 -48256524 - L2 LINE L2 -1235 2079 1963 207 0 0 0 chr15 53123997 53124020 -48256501 + (GA)n Simple_repeat Simple_repeat 1 23 0 491 287 117 20 chr15 53124020 53124136 -48256385 - L2 LINE L2 -1351 1963 1809 337 302 94 50 chr15 53124289 53124448 -48256073 - L2 LINE L2 -3 3269 3104 205 352 0 19 chr15 53124525 53124633 -48255888 + L2 LINE L2 2617 2722 -592 1805 158 3 14 chr15 53124969 53125254 -48255267 + AluJo SINE Alu 1 282 -30 1749 155 0 4 chr15 53125272 53125536 -48254985 + AluJo SINE Alu 40 302 -10 811 219 104 81 chr15 53128441 53128798 -48251723 - MLT1A1 LTR MaLR 0 365 1 250 309 63 78 chr15 53128933 53129202 -48251319 + L2 LINE L2 3004 3268 -4 1487 168 8 37 chr15 53134264 53134532 -48245989 + AluJo SINE Alu 37 296 -16 186 224 0 0 chr15 53134970 53135019 -48245502 + (CA)n Simple_repeat Simple_repeat 2 50 0 11742 181 72 20 chr15 53135366 53138487 -48242034 + L1M3f LINE L1 3 3948 -2380 659 232 8 0 chr15 53138487 53138612 -48241909 + FLAM_A SINE Alu 2 127 -6 11742 181 72 20 chr15 53138612 53139902 -48240619 + L1M3f LINE L1 3948 5170 -1158 8109 219 81 44 chr15 53139909 53140013 -48240508 + L1PA12 LINE L1 1 100 -7484 383 22 0 0 chr15 53140013 53140059 -48240462 - MADE1 DNA Mariner -34 46 1 8109 219 81 44 chr15 53140059 53141564 -48238957 + L1PA12 LINE L1 100 1547 -6037 1954 125 87 32 chr15 53141564 53141909 -48238612 - THE1B LTR MaLR 0 364 1 8109 219 81 44 chr15 53141909 53144537 -48235984 + L1PA12 LINE L1 1547 4159 -3425 27480 35 2 0 chr15 53144556 53148628 -48231893 - L1PA4 LINE L1 -4 6151 2073 1607 83 0 0 chr15 53148625 53148830 -48231691 + L1P LINE L1 1476 1680 -4466 * 736 103 0 9 chr15 53148816 53148923 -48231598 - L1P LINE L1 -4565 1581 1476 * 636 99 0 10 chr15 53148920 53149021 -48231500 + L1P LINE L1 2073 2172 -3974 * 243 327 27 27 chr15 53151002 53151112 -48229409 + MIR3 SINE MIR 91 200 -8 849 228 23 1 chr15 53151644 53151868 -48228653 - L1M LINE L1 -782 5364 5155 1611 175 4 8 chr15 53152793 53153061 -48227460 - AluJo SINE Alu -39 273 7 1503 157 51 8 chr15 53153473 53153728 -48226793 - AluJb SINE Alu -46 266 1 211 342 13 0 chr15 53153880 53153956 -48226565 - L2 LINE L2 -11 3302 3226 619 242 66 77 chr15 53154320 53154684 -48225837 + MLT1A2 LTR MaLR 2 361 -13 2078 130 3 13 chr15 53155401 53155709 -48224812 - AluSx SINE Alu -7 305 1 220 258 61 15 chr15 53156161 53156227 -48224294 - MIR SINE MIR -85 123 55 255 252 0 103 chr15 53156512 53156619 -48223902 + MIR SINE MIR 89 184 -78 361 301 0 0 chr15 53156729 53156822 -48223699 - MIR SINE MIR -57 205 113 313 287 55 27 chr15 53156900 53157140 -48223381 + MIR SINE MIR 12 256 -6 315 296 41 0 chr15 53157605 53157703 -48222818 + MIR SINE MIR 88 189 -73 219 69 0 0 chr15 53158305 53158334 -48222187 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2766 73 0 22 chr15 53158417 53158787 -48221734 + L1PA7 LINE L1 5792 6153 -1 352 276 88 0 chr15 53158866 53159036 -48221485 - MER5A DNA MER1_type 0 189 5 651 159 32 16 chr15 53162047 53162173 -48218348 + L1PA13 LINE L1 5995 6122 -41 269 189 0 38 chr15 53162188 53162241 -48218280 + L1PA13 LINE L1 6072 6122 -41 269 189 0 38 chr15 53162222 53162275 -48218246 + L1PA13 LINE L1 6072 6122 -41 251 208 0 38 chr15 53162256 53162309 -48218212 + L1PA13 LINE L1 6072 6122 -41 * 230 226 0 38 chr15 53162290 53162343 -48218178 + L1PA13 LINE L1 6072 6122 -41 * 248 208 0 38 chr15 53162392 53162445 -48218076 + L1PA13 LINE L1 6072 6122 -41 248 208 0 38 chr15 53162426 53162479 -48218042 + L1PA13 LINE L1 6072 6122 -41 * 289 217 43 29 chr15 53162460 53162529 -48217992 + L1PA13 LINE L1 6072 6141 -22 251 212 0 61 chr15 53162515 53162581 -48217940 + L1PA13 LINE L1 6061 6122 -41 * 248 208 0 38 chr15 53162562 53162615 -48217906 + L1PA13 LINE L1 6072 6122 -41 * 289 217 43 29 chr15 53162596 53162665 -48217856 + L1PA13 LINE L1 6072 6141 -22 231 159 0 45 chr15 53162639 53162683 -48217838 + L1PA13 LINE L1 6081 6122 -41 * 271 197 0 61 chr15 53162651 53162717 -48217804 + L1PA13 LINE L1 6061 6122 -41 230 226 0 38 chr15 53162868 53162921 -48217600 + L1PA13 LINE L1 6072 6122 -41 * 289 217 43 29 chr15 53162902 53162971 -48217550 + L1PA13 LINE L1 6072 6141 -22 271 197 0 61 chr15 53162957 53163023 -48217498 + L1PA13 LINE L1 6061 6122 -41 * 241 211 0 39 chr15 53163004 53163056 -48217465 + L1PA13 LINE L1 6072 6121 -42 * 240 226 0 38 chr15 53163038 53163091 -48217430 + L1PA13 LINE L1 6072 6122 -41 * 251 208 0 38 chr15 53163072 53163125 -48217396 + L1PA13 LINE L1 6072 6122 -41 426 125 62 25 chr15 53163149 53163229 -48217292 + L1PA13 LINE L1 6081 6163 0 2391 133 14 0 chr15 53164141 53164509 -48216012 - MER83C LTR ERV1 0 373 1 1559 94 5 9 chr15 53165438 53165650 -48214871 - THE1B LTR MaLR -153 211 1 2219 205 61 0 chr15 53165650 53166158 -48214363 + L1MB3 LINE L1 5645 6183 0 863 212 86 71 chr15 53169217 53169599 -48210922 - MLT1B LTR MaLR -2 388 1 304 200 55 0 chr15 53169921 53170031 -48210490 + (CACAG)n Simple_repeat Simple_repeat 4 119 0 624 193 6 17 chr15 53170919 53171100 -48209421 + (CAT)n Simple_repeat Simple_repeat 1 179 0 207 114 0 0 chr15 53171117 53171152 -48209369 + (CAT)n Simple_repeat Simple_repeat 2 36 0 659 197 6 0 chr15 53171199 53171377 -48209144 + (CAT)n Simple_repeat Simple_repeat 1 179 0 225 343 9 19 chr15 53171639 53171747 -48208774 + MIR SINE MIR 74 180 -82 272 355 20 13 chr15 53171764 53171916 -48208605 - MIR SINE MIR -108 154 2 315 319 17 0 chr15 53172552 53172668 -48207853 + L1ME LINE L1 5465 5582 -582 800 127 0 0 chr15 53172668 53172778 -48207743 + AluSq/x SINE Alu 1 110 -203 4083 213 56 17 chr15 53172880 53173602 -48206919 - L1 LINE L1 -1022 5124 4351 2340 84 0 14 chr15 53173602 53173899 -48206622 - AluY SINE Alu -18 293 1 4083 213 56 17 chr15 53173899 53174182 -48206339 - L1 LINE L1 -1795 4351 4080 23 33 0 0 chr15 53176688 53176718 -48203803 + AT_rich Low_complexity Low_complexity 1 30 0 3296 17 0 0 chr15 53176725 53177213 -48203308 - L1PA3 LINE L1 -657 5498 5011 4472 16 0 0 chr15 53177213 53177708 -48202813 + L1PA3 LINE L1 5506 6000 -155 190 29 88 0 chr15 53178459 53178493 -48202028 + T-rich Low_complexity Low_complexity 2 38 0 427 240 39 16 chr15 53179471 53179495 -48201026 - L1MC1 LINE L1 -6 6327 6305 3303 110 31 90 chr15 53179495 53179642 -48200879 - MER4A LTR ERV1 0 600 446 2328 75 0 0 chr15 53179642 53179947 -48200574 - AluY SINE Alu 0 307 3 3303 110 31 90 chr15 53179947 53180433 -48200088 - MER4A LTR ERV1 -154 446 3 427 240 39 16 chr15 53180433 53180537 -48199984 - L1MC1 LINE L1 -28 6305 6196 311 334 93 45 chr15 53181014 53181741 -48198780 + L2 LINE L2 649 1410 -1904 411 69 17 0 chr15 53181748 53181806 -48198715 + Alu SINE Alu 2 60 -258 233 284 0 34 chr15 53182669 53182757 -48197764 + L2 LINE L2 3185 3269 -3 419 210 10 0 chr15 53183472 53183572 -48196949 + GA-rich Low_complexity Low_complexity 1 101 0 1265 158 27 0 chr15 53183961 53184182 -48196339 + MER50 LTR ERV1 22 248 -486 * 1747 153 9 38 chr15 53184176 53184496 -48196025 + MER50 LTR ERV1 397 707 -27 1804 151 16 13 chr15 53184527 53184831 -48195690 - AluJb SINE Alu -7 305 1 211 248 69 40 chr15 53185567 53185668 -48194853 + MER5A DNA MER1_type 59 162 -27 574 69 0 0 chr15 53186405 53186477 -48194044 - L1P LINE L1 -4599 1547 1476 * 814 30 0 0 chr15 53186474 53186574 -48193947 + L1P LINE L1 2073 2172 -3974 16064 75 8 0 chr15 53186574 53188642 -48191879 - L1P LINE L1 -4061 2085 1 13014 167 8 9 chr15 53188641 53189105 -48191416 + L1P LINE L1 2714 3177 -2969 * 2334 94 7 7 chr15 53189105 53189414 -48191107 + AluY SINE Alu 1 309 -2 13014 167 8 9 chr15 53189414 53191266 -48189255 + L1P LINE L1 3177 5029 -1117 * 13134 187 18 75 chr15 53191263 53196584 -48183937 + L1P4 LINE L1 1222 6175 -694 499 309 44 31 chr15 53196579 53197224 -48183297 + L1ME LINE L1 4934 5557 -605 * 23 0 0 0 chr15 53199456 53199479 -48181042 + AT_rich Low_complexity Low_complexity 1 23 0 405 296 76 22 chr15 53199977 53200200 -48180321 - MARNA DNA Mariner -166 420 186 943 184 134 20 chr15 53201013 53201214 -48179307 + MER58A DNA MER1_type 1 224 0 228 356 110 7 chr15 53201618 53201764 -48178757 - MIR3 SINE MIR -11 197 37 449 270 100 10 chr15 53201806 53202006 -48178515 - LTR33 LTR ERVL 0 521 304 1642 207 12 18 chr15 53202508 53202846 -48177675 - MLT1E3 LTR MaLR 0 624 289 730 144 19 3 chr15 53202874 53203046 -48177475 - MLT1E1 LTR MaLR -424 230 5 21 0 0 0 chr15 53203144 53203165 -48177356 + AT_rich Low_complexity Low_complexity 1 21 0 268 206 124 84 chr15 53204965 53205107 -48175414 - MLT1L LTR MaLR -304 207 49 1073 229 47 0 chr15 53205107 53205321 -48175200 - MER58A DNA MER1_type 0 224 1 268 206 124 84 chr15 53205321 53205370 -48175151 - MLT1L LTR MaLR -462 49 3 7365 112 67 7 chr15 53207614 53208775 -48171746 + Tigger3b DNA MER2_type 1 1231 0 1769 178 0 32 chr15 53209859 53210174 -48170347 + AluJb SINE Alu 1 305 -7 219 282 109 18 chr15 53211858 53211968 -48168553 + MIR SINE MIR 72 191 -71 234 91 0 0 chr15 53212901 53212934 -48167587 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 8242 102 99 30 chr15 53212949 53214226 -48166295 + SVA Other Other 2 1366 -20 7450 31 0 13 chr15 53214386 53214591 -48165930 + L1PA4 LINE L1 5197 5403 -752 2433 24 0 17 chr15 53214591 53214878 -48165643 + AluY SINE Alu 28 309 -2 7450 31 0 13 chr15 53214878 53215640 -48164881 + L1PA4 LINE L1 5403 6152 -3 23 0 0 0 chr15 53215640 53215663 -48164858 + AT_rich Low_complexity Low_complexity 1 23 0 203 175 0 0 chr15 53215768 53215808 -48164713 + (TA)n Simple_repeat Simple_repeat 2 41 0 235 236 99 94 chr15 53216401 53216592 -48163929 - MLT1J LTR MaLR -112 399 208 5546 206 135 48 chr15 53216598 53218453 -48162068 - L1MCa LINE L1 -4392 2034 18 3337 210 76 40 chr15 53218448 53218543 -48161978 - L1M4 LINE L1 -745 5401 5311 * 2130 110 0 17 chr15 53218543 53218843 -48161678 - AluSx SINE Alu -15 297 3 3337 210 76 40 chr15 53218843 53219856 -48160665 - L1M4 LINE L1 -835 5311 4253 393 301 126 15 chr15 53221782 53221937 -48158584 + MIR SINE MIR 38 221 -41 2245 115 0 0 chr15 53221937 53222242 -48158279 + AluSx SINE Alu 1 305 -7 393 301 126 15 chr15 53222242 53222285 -48158236 + MIR SINE MIR 221 258 -4 207 0 0 0 chr15 53222764 53222787 -48157734 + (TA)n Simple_repeat Simple_repeat 2 24 0 1438 136 12 0 chr15 53223640 53223891 -48156630 - L1MA5A LINE L1 -3 6294 6041 503 309 144 0 chr15 53223998 53224192 -48156329 - MIR SINE MIR -11 251 30 269 231 74 37 chr15 53224261 53224369 -48156152 - L1MA10 LINE L1 0 6334 6223 922 187 7 1 chr15 53224418 53224603 -48155918 - L1ME1 LINE L1 -290 5882 5693 4464 164 38 14 chr15 53224604 53225614 -48154907 + L1MB2 LINE L1 5105 6143 -28 244 169 0 123 chr15 53225628 53225693 -48154828 + L1ME3A LINE L1 5962 6018 -152 391 307 74 52 chr15 53226351 53226582 -48153939 - MIR SINE MIR -6 256 21 200 171 0 0 chr15 53227445 53227480 -48153041 + MER5B DNA MER1_type 1 35 -143 1657 212 80 26 chr15 53227487 53227761 -48152760 + MLT2B1 LTR ERVL 6 311 -209 2418 161 37 37 chr15 53227761 53228222 -48152299 - LOR1b LTR ERV1 0 461 1 1657 212 80 26 chr15 53228222 53228362 -48152159 + MLT2B1 LTR ERVL 311 442 -78 340 302 22 17 chr15 53228382 53228561 -48151960 + (TA)n Simple_repeat Simple_repeat 1 180 0 11015 221 53 21 chr15 53228585 53232232 -48148289 - L1MA9 LINE L1 -234 6078 2300 1772 163 38 20 chr15 53232233 53232577 -48147944 + MER65A LTR ERV1 1 350 -95 8425 119 4 46 chr15 53232579 53233391 -48147130 + HSMAR1 DNA Mariner 27 765 -522 2187 125 3 0 chr15 53233391 53233695 -48146826 - AluSq SINE Alu -8 305 1 8425 119 4 46 chr15 53233695 53234196 -48146325 + HSMAR1 DNA Mariner 765 1285 -2 443 143 12 24 chr15 53234196 53234276 -48146245 + MER65A LTR ERV1 365 443 -2 834 258 22 9 chr15 53234312 53234537 -48145984 + MER65A-int LTR ERV1 36 263 -4608 36731 97 9 12 chr15 53234550 53240217 -48140304 + L1PA6 LINE L1 11 5657 -497 2024 74 4 4 chr15 53240317 53240587 -48139934 + L1PA6 LINE L1 5880 6149 -5 1084 243 30 58 chr15 53240651 53241013 -48139508 + MER65A-int LTR ERV1 357 708 -4163 13324 202 26 8 chr15 53241100 53246424 -48134097 + L1PB1 LINE L1 105 5751 -1111 2219 56 9 4 chr15 53246426 53246734 -48133787 - L1PA4 LINE L1 -44 6124 5793 * 3604 122 20 5 chr15 53246717 53247420 -48133101 + L1PA4 LINE L1 5794 6507 -360 518 165 0 0 chr15 53247474 53247565 -48132956 + L1PB1 LINE L1 6498 6588 -279 629 13 0 0 chr15 53247565 53247644 -48132877 - L1PA2 LINE L1 0 6155 6077 2011 220 84 49 chr15 53247780 53248447 -48132074 + LTR8 LTR ERV1 16 691 0 1499 161 30 13 chr15 53248447 53248897 -48131624 - L1M3 LINE L1 -628 5555 5099 362 253 0 0 chr15 53248904 53248987 -48131534 + L1M4 LINE L1 4851 4933 -1213 841 229 93 0 chr15 53249928 53250133 -48130388 + MER58A DNA MER1_type 1 224 0 1825 159 30 3 chr15 53253016 53253318 -48127203 - AluJo SINE Alu 0 312 3 223 300 14 0 chr15 53253448 53253518 -48127003 + (TA)n Simple_repeat Simple_repeat 2 72 0 2280 93 0 10 chr15 53254018 53254320 -48126201 - AluSg SINE Alu -11 299 1 556 79 0 0 chr15 53254571 53254647 -48125874 - HY3 scRNA scRNA -1 100 25 1004 131 15 45 chr15 53254829 53254976 -48125545 + MER65A LTR ERV1 253 394 -51 2411 63 3 13 chr15 53254976 53255277 -48125244 - AluY SINE Alu -13 298 1 1004 131 15 45 chr15 53255277 53255328 -48125193 + MER65A LTR ERV1 394 445 0 2643 237 73 66 chr15 53255328 53256106 -48124415 - L1 LINE L1 -3844 2366 1594 1916 139 3 14 chr15 53256106 53256400 -48124121 - AluSx SINE Alu -17 295 5 2643 237 73 66 chr15 53256400 53256758 -48123763 - L1 LINE L1 -4616 1594 1240 1451 189 37 37 chr15 53256758 53257054 -48123467 - AluJb SINE Alu -16 296 1 2643 237 73 66 chr15 53257054 53257218 -48123303 - L1 LINE L1 -4970 1240 1079 337 164 0 0 chr15 53257218 53257273 -48123248 + MER87 LTR ERV1 91 145 -396 2643 237 73 66 chr15 53257273 53258298 -48122223 - L1 LINE L1 -5131 1079 4 900 180 31 36 chr15 53258325 53258547 -48121974 - L1M3 LINE L1 -385 5786 5566 438 223 58 0 chr15 53258666 53258769 -48121752 + L1M1 LINE L1 21 129 -7436 14188 173 157 17 chr15 53258773 53259983 -48120538 + L1M1 LINE L1 12 1051 -6514 2326 139 111 5 chr15 53259983 53260370 -48120151 - MSTA LTR MaLR 0 428 1 14188 173 157 17 chr15 53260370 53263589 -48116932 + L1M1 LINE L1 1051 5074 -2491 21 0 0 0 chr15 53263763 53263784 -48116737 + AT_rich Low_complexity Low_complexity 1 21 0 693 228 0 0 chr15 53263785 53263921 -48116600 - FAM SINE Alu -19 166 31 349 241 267 11 chr15 53263923 53264189 -48116332 - L1MEc LINE L1 -4619 1596 1263 2660 237 108 22 chr15 53264198 53264434 -48116087 - L1MEc LINE L1 -5169 1227 1013 1697 169 0 53 chr15 53264434 53264754 -48115767 - AluJb SINE Alu -9 303 1 2660 237 108 22 chr15 53264754 53265615 -48114906 - L1MEc LINE L1 -5383 1013 34 333 256 67 11 chr15 53265791 53265881 -48114640 + MLT1I LTR MaLR 313 407 -2 272 347 78 25 chr15 53266077 53266319 -48114202 - MLT1I LTR MaLR -150 259 5 459 200 33 0 chr15 53267138 53267228 -48113293 + MER99 DNA DNA 2 94 -734 21 0 0 0 chr15 53267617 53267638 -48112883 + AT_rich Low_complexity Low_complexity 1 21 0 3065 193 22 3 chr15 53267861 53268448 -48112073 + MER99 DNA DNA 230 827 -1 2237 68 17 3 chr15 53268484 53268778 -48111743 + AluY SINE Alu 3 300 -11 2102 111 0 36 chr15 53268994 53269300 -48111221 + AluSx SINE Alu 1 295 -17 627 310 77 17 chr15 53269552 53269852 -48110669 - MLT1I LTR MaLR 0 409 92 23 0 0 0 chr15 53269895 53269918 -48110603 + AT_rich Low_complexity Low_complexity 1 23 0 2377 94 0 3 chr15 53270103 53270410 -48110111 + AluSq SINE Alu 1 306 -7 1796 131 28 3 chr15 53270410 53270693 -48109828 + AluSx SINE Alu 1 290 -22 717 204 74 0 chr15 53270882 53271044 -48109477 - MER58A DNA MER1_type -8 216 43 2182 102 10 3 chr15 53271109 53271403 -48109118 + AluSq SINE Alu 1 296 -17 2199 101 3 3 chr15 53271452 53271748 -48108773 + AluSp SINE Alu 1 296 -17 22 0 0 0 chr15 53272067 53272089 -48108432 + AT_rich Low_complexity Low_complexity 1 22 0 3291 131 132 19 chr15 53272341 53272809 -48107712 - Tigger3(Golem) DNA MER2_type -1 3027 2459 1698 174 0 17 chr15 53272809 53273097 -48107424 - AluJb SINE Alu -29 283 1 3291 131 132 19 chr15 53273097 53273302 -48107219 - Tigger3(Golem) DNA MER2_type -569 2459 2278 520 151 161 0 chr15 53273294 53273387 -48107134 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 7945 19 1 1 chr15 53273583 53275130 -48105391 - L1PA3 LINE L1 -151 6004 4458 2117 74 0 7 chr15 53275135 53275431 -48105090 + L1PB1 LINE L1 5858 6151 0 386 234 8 68 chr15 53275459 53275484 -48105037 + MER65A-int LTR ERV1 702 727 -4295 283 254 18 88 chr15 53275484 53275598 -48104923 + LTR57-int LTR ERVL 302 407 -4936 386 234 8 68 chr15 53275598 53275628 -48104893 + MER65A-int LTR ERV1 727 967 -4055 6396 214 67 66 chr15 53275655 53277699 -48102822 + MER65A-int LTR ERV1 867 2908 -1963 2249 71 0 0 chr15 53277699 53278014 -48102507 + AluY SINE Alu 1 315 0 6396 214 67 66 chr15 53278014 53278126 -48102395 + MER65A-int LTR ERV1 2908 3018 -1853 316 153 0 0 chr15 53278126 53278185 -48102336 + L1MA1 LINE L1 6240 6298 -4 6396 214 67 66 chr15 53278185 53278384 -48102137 + MER65A-int LTR ERV1 3018 3215 -1656 2105 112 0 26 chr15 53278384 53278696 -48101825 + AluSp SINE Alu 1 304 -9 6396 214 67 66 chr15 53278696 53281872 -48098649 + MER65A-int LTR ERV1 3215 4869 -2 1716 190 3 7 chr15 53281872 53282162 -48098359 + AluJo SINE Alu 3 291 -21 282 143 0 0 chr15 53282188 53282237 -48098284 + MER65A LTR ERV1 5 53 -392 1637 101 13 8 chr15 53282241 53282478 -48098043 + AluSq SINE Alu 5 242 -71 32 0 0 0 chr15 53283604 53283636 -48096885 + AT_rich Low_complexity Low_complexity 1 32 0 271 274 265 20 chr15 53284066 53284270 -48096251 - MIR SINE MIR -2 260 7 355 300 61 76 chr15 53284297 53284560 -48095961 + HAL1 LINE L1 16 274 -2233 2179 117 7 0 chr15 53284720 53285018 -48095503 - AluSx SINE Alu -12 300 1 949 128 0 0 chr15 53285021 53285154 -48095367 - AluSq/x SINE Alu -179 133 1 354 389 75 13 chr15 53285154 53285393 -48095128 + HAL1 LINE L1 443 696 -1811 1697 164 3 39 chr15 53285404 53285715 -48094806 - AluJo SINE Alu -12 300 1 2475 198 116 21 chr15 53285944 53287014 -48093507 + Charlie1 DNA MER1_type 1444 2668 -93 263 297 0 0 chr15 53287037 53287101 -48093420 - MER91B DNA MER1_type -126 64 1 1593 267 106 72 chr15 53287102 53288397 -48092124 + HAL1 LINE L1 775 2113 -394 328 130 0 0 chr15 53288436 53288482 -48092039 - MER96B DNA MER1_type? -182 235 190 719 182 8 0 chr15 53288525 53288657 -48091864 - FLAM_C SINE Alu 0 133 1 371 282 66 17 chr15 53290030 53290211 -48090310 + L1MEc LINE L1 1748 1937 -4459 * 505 231 48 82 chr15 53290204 53290472 -48090049 + L1MEc LINE L1 3328 3586 -2629 21 36 0 0 chr15 53291810 53291838 -48088683 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr15 53293243 53293265 -48087256 + AT_rich Low_complexity Low_complexity 1 22 0 2353 87 0 3 chr15 53293781 53294081 -48086440 - AluSq SINE Alu -14 299 1 1665 145 10 51 chr15 53294435 53294746 -48085775 + AluJo SINE Alu 3 300 -12 207 343 133 0 chr15 53294910 53295015 -48085506 - L2 LINE L2 -15 3257 3139 293 328 105 51 chr15 53295465 53295761 -48084760 - L2 LINE L2 -701 2613 2302 1754 181 7 3 chr15 53295824 53296122 -48084399 - AluJb SINE Alu -13 299 1 315 318 132 16 chr15 53296234 53296363 -48084158 - MIR3 SINE MIR -10 198 55 208 325 128 20 chr15 53296365 53296568 -48083953 + L2 LINE L2 2514 2738 -576 1029 260 19 8 chr15 53296808 53297066 -48083455 + MIR SINE MIR 2 262 0 22 35 0 0 chr15 53298108 53298137 -48082384 + AT_rich Low_complexity Low_complexity 1 29 0 888 219 123 41 chr15 53299156 53299448 -48081073 + L2 LINE L2 2998 3313 0 234 200 0 60 chr15 53299872 53299922 -48080599 + MER2 DNA MER2_type 1 47 -298 511 246 120 24 chr15 53299989 53300156 -48080365 + MER2 DNA MER2_type 163 345 0 28 0 0 0 chr15 53301222 53301250 -48079271 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr15 53301298 53301321 -48079200 + AT_rich Low_complexity Low_complexity 1 23 0 309 250 110 0 chr15 53303045 53303145 -48077376 + MIR SINE MIR 34 144 -64 311 330 18 18 chr15 53303154 53303266 -48077255 - L2 LINE L2 -4 3268 3157 218 263 168 0 chr15 53303342 53303437 -48077084 - MIR SINE MIR -5 257 147 2059 84 7 4 chr15 53303522 53303796 -48076725 - AluSg SINE Alu -35 275 1 677 237 210 39 chr15 53304978 53305311 -48075210 - L2 LINE L2 0 3313 2924 3355 189 73 6 chr15 53305950 53306658 -48073863 + L1MB7 LINE L1 5429 6184 0 646 211 16 0 chr15 53307316 53307444 -48073077 - FLAM_A SINE Alu -3 130 1 207 0 0 0 chr15 53307468 53307491 -48073030 + (A)n Simple_repeat Simple_repeat 1 23 0 1271 155 148 55 chr15 53307662 53307972 -48072549 + MER44D DNA MER2_type 1 609 0 288 288 27 0 chr15 53308039 53308112 -48072409 + MER5A DNA MER1_type 112 186 -3 23 33 0 0 chr15 53308197 53308227 -48072294 + AT_rich Low_complexity Low_complexity 1 30 0 21 89 0 0 chr15 53308926 53308982 -48071539 + AT_rich Low_complexity Low_complexity 1 56 0 344 258 0 0 chr15 53308990 53309083 -48071438 + L1ME1 LINE L1 6070 6162 -4 211 244 0 0 chr15 53309292 53309337 -48071184 + L2 LINE L2 3269 3313 0 226 316 38 38 chr15 53310199 53310278 -48070243 - MIR SINE MIR -148 114 36 2193 88 7 23 chr15 53310836 53311141 -48069380 + AluSx SINE Alu 1 300 -12 1459 208 13 16 chr15 53311291 53311604 -48068917 + AluJb SINE Alu 1 312 0 254 227 0 0 chr15 53311958 53312024 -48068497 + L1MA6 LINE L1 6090 6155 -145 777 199 63 21 chr15 53312024 53312215 -48068306 + AluJo SINE Alu 109 307 -5 462 138 174 0 chr15 53312218 53312327 -48068194 + L1MA4A LINE L1 6170 6297 -6 251 273 41 41 chr15 53313611 53313732 -48066789 + MARNA DNA Mariner 293 413 -173 383 65 81 0 chr15 53313952 53314014 -48066507 + Alu SINE Alu 232 298 -2 29 28 0 0 chr15 53314041 53314077 -48066444 + AT_rich Low_complexity Low_complexity 1 36 0 2090 113 17 0 chr15 53314146 53314437 -48066084 + AluSx SINE Alu 1 296 -16 29 47 0 0 chr15 53314839 53314882 -48065639 + AT_rich Low_complexity Low_complexity 1 43 0 395 280 38 23 chr15 53316048 53316180 -48064341 + MIR SINE MIR 73 206 -56 189 121 0 0 chr15 53316220 53316253 -48064268 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1080 215 5 0 chr15 53317622 53317827 -48062694 + MER3 DNA MER1_type 1 206 -3 207 222 238 48 chr15 53317887 53318013 -48062508 - MIR3 SINE MIR -46 162 13 981 6 72 0 chr15 53318045 53318211 -48062310 + (TA)n Simple_repeat Simple_repeat 1 178 0 201 196 0 0 chr15 53318253 53318299 -48062222 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 1039 124 77 0 chr15 53318399 53318568 -48061953 - L1PA12 LINE L1 -15 6153 5972 5336 163 49 9 chr15 53318673 53319742 -48060779 + L1MA4 LINE L1 3635 4745 -1401 4663 148 43 19 chr15 53319743 53320949 -48059572 + L1MA4 LINE L1 5114 6305 0 921 216 73 9 chr15 53320953 53321185 -48059336 + L1MB5 LINE L1 5920 6166 -8 481 307 52 89 chr15 53321191 53321673 -48058848 - LTR67 LTR ERVL -68 489 26 371 272 171 27 chr15 53321730 53322098 -48058423 + L1MB4 LINE L1 4124 4544 -1602 211 307 167 0 chr15 53322374 53322488 -48058033 + MIR SINE MIR 104 236 -26 2074 123 0 0 chr15 53322686 53322971 -48057550 - AluSq SINE Alu -22 291 7 2068 190 39 12 chr15 53323841 53324256 -48056265 - MSTB LTR MaLR 0 426 1 35 83 0 0 chr15 53324308 53324392 -48056129 + AT_rich Low_complexity Low_complexity 1 84 0 400 286 138 22 chr15 53324395 53324706 -48055815 - L1M4 LINE L1 -1005 5141 4795 1507 154 55 22 chr15 53324766 53325039 -48055482 + AluJo SINE Alu 1 282 -30 10916 194 53 7 chr15 53325054 53327334 -48053187 - Cheshire DNA MER1_type -33 2387 2 2238 174 45 5 chr15 53328339 53328758 -48051763 + L1MB2 LINE L1 5654 6089 -82 320 191 0 0 chr15 53328741 53328804 -48051717 + L1MB4 LINE L1 4781 4843 -1303 * 441 130 83 56 chr15 53328819 53328927 -48051594 - L1MB4 LINE L1 0 6180 6070 * 5732 217 48 17 chr15 53328896 53329310 -48051211 - L1M4 LINE L1 -1346 4800 4401 2148 136 91 10 chr15 53329310 53329706 -48050815 - MSTA LTR MaLR 0 428 1 5732 217 48 17 chr15 53329706 53329919 -48050602 - L1M4 LINE L1 -1745 4401 4196 513 47 0 0 chr15 53329919 53329983 -48050538 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 5732 217 48 17 chr15 53329983 53330165 -48050356 - L1M4 LINE L1 -1950 4196 4021 1742 78 0 0 chr15 53330165 53330383 -48050138 - AluY SINE Alu -59 252 35 5732 217 48 17 chr15 53330383 53331057 -48049464 - L1M4 LINE L1 -2125 4021 3268 294 284 10 10 chr15 53331383 53331495 -48049026 + L1ME LINE L1 17 556 -5974 3505 237 56 39 chr15 53332132 53332808 -48047713 + L1ME LINE L1 917 1580 -4960 3309 169 40 29 chr15 53332808 53332891 -48047630 + L1MB4 LINE L1 5442 5523 -657 1917 150 142 8 chr15 53332891 53333285 -48047236 + MER83 LTR ERV1 1 447 -1 3309 169 40 29 chr15 53333285 53333931 -48046590 + L1MB4 LINE L1 5523 6179 -1 3505 237 56 39 chr15 53333931 53334054 -48046467 + L1ME LINE L1 1580 1699 -4841 1708 208 46 37 chr15 53334054 53334511 -48046010 + MER65C LTR ERV1 1 461 0 3505 237 56 39 chr15 53334511 53335122 -48045399 + L1ME LINE L1 1699 2316 -4224 1709 180 64 16 chr15 53335120 53335470 -48045051 + L1ME1 LINE L1 5542 5914 -252 * 3389 126 35 6 chr15 53335470 53336008 -48044513 + MER41C LTR ERV1 1 554 0 1709 180 64 16 chr15 53336008 53336045 -48044476 + L1ME1 LINE L1 5914 5948 -218 943 247 43 10 chr15 53336060 53336360 -48044161 + L1ME LINE L1 2880 3189 -3351 1274 201 49 7 chr15 53336362 53336646 -48043875 + L1ME LINE L1 5834 6129 -431 327 143 18 0 chr15 53336649 53336705 -48043816 - MLT1E3 LTR MaLR 0 624 568 2157 112 0 13 chr15 53336768 53337082 -48043439 + AluSx SINE Alu 1 310 -2 537 309 6 12 chr15 53337262 53337424 -48043097 + MIR SINE MIR 98 258 -4 3852 114 42 10 chr15 53338505 53339125 -48041396 + MER51C LTR ERV1 1 640 0 452 343 80 26 chr15 53339172 53339700 -48040821 + L1MEd LINE L1 530 1085 -5120 558 311 120 11 chr15 53339841 53340308 -48040213 + L1MEd LINE L1 1303 1820 -4576 232 214 18 18 chr15 53340449 53340505 -48040016 + L2 LINE L2 3258 3313 0 233 302 9 47 chr15 53340639 53340745 -48039776 + Charlie8 DNA MER1_type 156 257 -2160 329 240 16 62 chr15 53341063 53341192 -48039329 + Charlie8 DNA MER1_type 137 259 -2158 413 257 113 48 chr15 53341229 53341340 -48039181 + L1MEd LINE L1 1963 2065 -4150 2282 136 17 3 chr15 53341340 53341701 -48038820 - MER47A DNA MER2_type 0 366 1 413 257 113 48 chr15 53341701 53341881 -48038640 + L1MEd LINE L1 2065 2273 -3942 365 189 84 0 chr15 53341902 53341997 -48038524 + L1MEd LINE L1 2329 2431 -3784 10356 129 16 6 chr15 53342117 53344054 -48036467 - L1P4 LINE L1 -527 5641 3692 192 40 0 0 chr15 53344073 53344098 -48036423 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 269 312 0 13 chr15 53344115 53344192 -48036329 + MIR SINE MIR 175 250 -12 550 191 0 0 chr15 53344262 53344356 -48036165 - AluJb SINE Alu -17 295 202 1568 269 156 48 chr15 53344490 53345550 -48034971 + L2 LINE L2 2123 3309 -4 613 249 105 6 chr15 53345973 53346154 -48034367 + MIR SINE MIR 54 252 -10 35 24 0 0 chr15 53349111 53349153 -48031368 + AT_rich Low_complexity Low_complexity 1 42 0 518 261 126 55 chr15 53349213 53349412 -48031109 - MIR SINE MIR -24 238 26 2243 112 0 13 chr15 53349414 53349727 -48030794 - AluSx SINE Alu -3 309 1 21 0 0 0 chr15 53350509 53350530 -48029991 + AT_rich Low_complexity Low_complexity 1 21 0 1898 156 7 0 chr15 53351890 53352192 -48028329 - AluJb SINE Alu -8 304 1 26 30 0 0 chr15 53354331 53354364 -48026157 + AT_rich Low_complexity Low_complexity 1 33 0 228 321 50 36 chr15 53356268 53356757 -48023764 + HAL1b LINE L1 247 771 -577 257 0 30 0 chr15 53356757 53356790 -48023731 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 228 321 50 36 chr15 53356790 53356876 -48023645 + HAL1b LINE L1 771 854 -494 496 317 88 49 chr15 53357250 53357560 -48022961 + L1M4 LINE L1 2111 2407 -3739 2083 102 10 3 chr15 53357560 53357854 -48022667 - AluSx SINE Alu -16 296 1 496 317 88 49 chr15 53357854 53358155 -48022366 + L1M4 LINE L1 2407 2746 -3400 258 217 108 12 chr15 53358252 53358335 -48022186 + MIR SINE MIR 161 251 -11 302 269 92 17 chr15 53358808 53358927 -48021594 + L1MC4a LINE L1 5886 6013 -1795 2265 54 7 0 chr15 53359648 53359926 -48020595 + AluY SINE Alu 23 302 -9 30 89 0 0 chr15 53360203 53360282 -48020239 + AT_rich Low_complexity Low_complexity 1 79 0 22 0 0 0 chr15 53360327 53360349 -48020172 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr15 53360908 53360940 -48019581 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr15 53361081 53361104 -48019417 + AT_rich Low_complexity Low_complexity 1 23 0 2392 73 0 0 chr15 53361516 53361817 -48018704 + AluY SINE Alu 1 301 -10 181 343 75 45 chr15 53362238 53362305 -48018216 + MIR SINE MIR 18 86 -176 397 292 60 87 chr15 53362340 53362525 -48017996 + MIR SINE MIR 68 247 -15 43 47 0 0 chr15 53364674 53364738 -48015783 + AT_rich Low_complexity Low_complexity 1 64 0 438 20 0 0 chr15 53365705 53365756 -48014765 + (CA)n Simple_repeat Simple_repeat 2 52 0 948 205 186 16 chr15 53366068 53366375 -48014146 + L1MD3 LINE L1 7625 7983 -12 307 251 177 89 chr15 53366415 53366483 -48014038 + L1ME LINE L1 5551 5612 -509 216 0 0 0 chr15 53366483 53366507 -48014014 + (TG)n Simple_repeat Simple_repeat 1 24 0 1955 149 0 0 chr15 53366507 53366789 -48013732 - AluSq SINE Alu -31 282 1 307 251 177 89 chr15 53366789 53366922 -48013599 + L1ME LINE L1 5611 5771 -350 2319 102 0 0 chr15 53366950 53367244 -48013277 - AluSc SINE Alu -15 294 1 434 355 25 10 chr15 53367758 53367958 -48012563 - MIR SINE MIR -58 204 2 320 286 31 31 chr15 53368158 53368256 -48012265 + MER5B DNA MER1_type 3 100 -78 2347 88 0 0 chr15 53368607 53368901 -48011620 - AluSx SINE Alu -18 294 1 3751 192 65 10 chr15 53369042 53369929 -48010592 - Charlie1a DNA MER1_type 0 1455 520 2207 182 85 74 chr15 53369934 53370512 -48010009 + MLT1E LTR MaLR 1 584 -9 23 33 0 0 chr15 53370535 53370565 -48009956 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr15 53370803 53370825 -48009696 + AT_rich Low_complexity Low_complexity 1 22 0 2003 198 54 40 chr15 53371060 53371561 -48008960 - Charlie1a DNA MER1_type -946 509 2 808 293 7 4 chr15 53371639 53371869 -48008652 + MIR SINE MIR 28 260 -2 22 56 0 0 chr15 53372648 53372684 -48007837 + AT_rich Low_complexity Low_complexity 1 36 0 450 0 0 0 chr15 53374327 53374377 -48006144 + (CA)n Simple_repeat Simple_repeat 2 51 0 1905 156 3 0 chr15 53374988 53375292 -48005229 + AluJb SINE Alu 1 305 0 1977 140 0 10 chr15 53376119 53376412 -48004109 + AluSx SINE Alu 5 294 -18 273 346 126 22 chr15 53376841 53377023 -48003498 + MIR SINE MIR 21 221 -41 2061 135 12 93 chr15 53377381 53377612 -48002909 + MLT1B LTR MaLR 4 187 -203 2064 129 0 10 chr15 53377612 53377921 -48002600 + AluSx SINE Alu 4 309 -3 2061 135 12 93 chr15 53377921 53378110 -48002411 + MLT1B LTR MaLR 187 390 0 25 31 0 0 chr15 53378209 53378241 -48002280 + AT_rich Low_complexity Low_complexity 1 32 0 304 298 50 25 chr15 53379194 53379315 -48001206 - L2 LINE L2 0 3272 3149 7359 45 1 0 chr15 53380007 53381436 -47999085 + L1PA5 LINE L1 4724 6153 -1 2144 81 6 56 chr15 53381540 53381863 -47998658 + AluSx SINE Alu 4 310 -2 546 265 37 90 chr15 53382510 53382755 -47997766 + MIR SINE MIR 21 252 -10 2039 113 13 10 chr15 53382800 53383100 -47997421 + AluSx SINE Alu 1 301 -11 1653 141 100 25 chr15 53383171 53383491 -47997030 - MER7A DNA MER2_type -2 344 3 875 157 94 13 chr15 53383776 53383935 -47996586 + AluJb SINE Alu 1 172 -140 21 0 0 0 chr15 53384048 53384069 -47996452 + AT_rich Low_complexity Low_complexity 1 21 0 2261 108 3 0 chr15 53384117 53384414 -47996107 - AluSx SINE Alu -12 300 3 21 36 0 0 chr15 53387097 53387125 -47993396 + AT_rich Low_complexity Low_complexity 1 28 0 548 371 37 48 chr15 53387172 53387192 -47993329 - L2 LINE L2 -2 3270 3251 1410 171 93 25 chr15 53387192 53387514 -47993007 - MER2 DNA MER2_type 0 344 1 548 371 37 48 chr15 53387514 53388051 -47992470 - L2 LINE L2 -21 3251 2713 966 296 181 18 chr15 53388150 53388653 -47991868 - MLT1K LTR MaLR -2 586 2 278 294 0 81 chr15 53388690 53388826 -47991695 + L3 LINE CR1 1187 1311 -266 30 45 0 0 chr15 53388934 53388978 -47991543 + AT_rich Low_complexity Low_complexity 1 44 0 375 263 34 17 chr15 53389013 53389131 -47991390 - MIR SINE MIR -58 204 85 292 283 113 48 chr15 53389366 53389596 -47990925 + MLT1L LTR MaLR 161 405 -210 477 283 83 45 chr15 53389745 53389983 -47990538 + MIR SINE MIR 17 259 -3 23 0 0 0 chr15 53390075 53390098 -47990423 + AT_rich Low_complexity Low_complexity 1 23 0 440 128 0 13 chr15 53390429 53390507 -47990014 - AluS SINE Alu -233 77 1 1458 251 71 11 chr15 53390508 53390958 -47989563 + L1MC4a LINE L1 5513 5989 -1819 591 182 67 24 chr15 53392065 53392230 -47988291 - Looper DNA T2_type 0 1558 1387 4027 167 40 36 chr15 53393080 53393163 -47987358 - Looper DNA T2_type -172 1386 1305 2160 124 42 17 chr15 53393163 53393519 -47987002 - MER47A DNA MER2_type -1 365 1 4027 167 40 36 chr15 53393519 53393884 -47986637 - Looper DNA T2_type -253 1305 943 1897 123 42 7 chr15 53393884 53394169 -47986352 + AluJo SINE Alu 1 295 -17 4027 167 40 36 chr15 53394169 53394589 -47985932 - Looper DNA T2_type -615 943 513 727 271 75 59 chr15 53394599 53394723 -47985798 + MER34 LTR ERV1 26 147 -395 2155 99 38 0 chr15 53394723 53395016 -47985505 - AluSq SINE Alu -9 304 1 727 271 75 59 chr15 53395016 53395400 -47985121 + MER34 LTR ERV1 147 542 0 1596 187 99 59 chr15 53395401 53395894 -47984627 - Looper DNA T2_type -1043 515 3 1522 23 0 0 chr15 53396055 53396231 -47984290 + L1PA5 LINE L1 5978 6153 -1 309 26 0 0 chr15 53396301 53396339 -47984182 + (CA)n Simple_repeat Simple_repeat 1 38 0 2390 158 11 21 chr15 53396577 53397045 -47983476 - L1MB8 LINE L1 0 6178 5716 222 116 0 0 chr15 53398396 53398439 -47982082 + (TTTTTG)n Simple_repeat Simple_repeat 1 43 0 2013 133 48 0 chr15 53398443 53398736 -47981785 - AluSx SINE Alu -5 307 1 830 158 0 8 chr15 53398790 53398923 -47981598 - FLAM_A SINE Alu -1 132 1 363 183 48 0 chr15 53399937 53400063 -47980458 + (TA)n Simple_repeat Simple_repeat 2 133 0 1960 152 5 76 chr15 53400235 53400283 -47980238 + L1MB3 LINE L1 5782 5832 -351 2581 39 0 7 chr15 53400283 53400590 -47979931 + AluY SINE Alu 1 305 -6 1960 152 5 76 chr15 53400590 53400961 -47979560 + L1MB3 LINE L1 5832 6171 -12 1134 143 0 0 chr15 53401010 53401171 -47979350 + FRAM SINE Alu 1 159 -17 890 268 113 35 chr15 53401308 53401794 -47978727 + HAL1b LINE L1 61 584 -764 450 207 44 30 chr15 53401873 53402008 -47978513 + L1MC/D LINE L1 5299 5435 -2373 275 152 22 0 chr15 53402008 53402054 -47978467 + Alu SINE Alu 1 47 -261 267 276 32 32 chr15 53402220 53402343 -47978178 + L3 LINE CR1 1295 1417 -160 1895 170 49 85 chr15 53403554 53404002 -47976519 + MSTB1 LTR MaLR 1 432 0 14471 122 20 35 chr15 53404089 53405384 -47975137 - Tigger1 DNA MER2_type 0 2418 1176 1822 149 0 28 chr15 53405384 53405673 -47974848 - AluSx SINE Alu -30 282 2 14471 122 20 35 chr15 53405673 53406831 -47973690 - Tigger1 DNA MER2_type -1242 1176 2 603 141 138 100 chr15 53406868 53406950 -47973571 + L1MB5 LINE L1 5694 5771 -403 5902 23 0 0 chr15 53406950 53407633 -47972888 + L1PA3 LINE L1 5461 6143 -12 603 141 138 100 chr15 53407633 53407957 -47972564 + L1MB5 LINE L1 5771 6174 0 2573 164 10 2 chr15 53408202 53408616 -47971905 - MER47B DNA MER2_type -1 417 1 205 299 46 46 chr15 53409025 53409112 -47971409 + MIR SINE MIR 110 196 -66 530 272 65 26 chr15 53410561 53410888 -47969633 + L1MC5 LINE L1 7195 7448 -360 1866 156 0 13 chr15 53410920 53411227 -47969294 + AluJb SINE Alu 2 304 -8 266 286 82 60 chr15 53411308 53411490 -47969031 + L1MC4 LINE L1 7770 7955 -87 612 203 39 0 chr15 53411590 53411718 -47968803 + FLAM_A SINE Alu 1 133 0 284 252 49 65 chr15 53411823 53411946 -47968575 + MIR SINE MIR 24 144 -64 24 0 0 0 chr15 53413128 53413152 -47967369 + GC_rich Low_complexity Low_complexity 1 24 0 240 111 0 0 chr15 53413190 53413226 -47967295 + (GGA)n Simple_repeat Simple_repeat 2 37 0 1803 187 39 39 chr15 53413776 53414237 -47966284 - MER65C LTR ERV1 0 461 1 1261 173 47 4 chr15 53414895 53415150 -47965371 - LTR54 LTR ERV1 -7 503 238 1033 167 0 0 chr15 53415179 53415341 -47965180 + FRAM SINE Alu 1 161 -15 955 132 102 49 chr15 53415345 53415550 -47964971 - LTR54 LTR ERV1 -277 233 18 2337 98 12 0 chr15 53415550 53415885 -47964636 + L1PB1 LINE L1 5811 6149 -2 340 290 40 106 chr15 53416633 53416954 -47963567 + MLT1K LTR MaLR 236 535 -53 253 239 145 83 chr15 53416963 53417493 -47963028 + MER34 LTR ERV1 61 542 0 458 282 103 34 chr15 53417545 53417954 -47962567 + MLT1J2 LTR MaLR 1 448 -2 1414 164 69 21 chr15 53418247 53418582 -47961939 - LTR48 LTR ERV1 0 787 437 844 165 30 4 chr15 53418592 53418781 -47961740 - LTR54 LTR ERV1 -92 418 238 828 182 0 0 chr15 53418798 53418930 -47961591 + FRAM SINE Alu 1 131 -45 1563 152 103 61 chr15 53418932 53419340 -47961181 - LTR48 LTR ERV1 -362 425 1 428 359 47 13 chr15 53419723 53419957 -47960564 + LTR16C LTR ERVL 74 315 -176 872 190 151 13 chr15 53420012 53420244 -47960277 + LTR50 LTR ERVL 12 275 -520 4336 168 37 8 chr15 53420270 53420519 -47960002 - L1 LINE L1 -1224 4922 4682 1769 163 9 35 chr15 53420519 53420838 -47959683 - AluJo SINE Alu 0 312 2 4336 168 37 8 chr15 53420838 53421513 -47959008 - L1 LINE L1 -1464 4682 3971 324 204 91 0 chr15 53421527 53421615 -47958906 + MER5C DNA MER1_type 225 320 -4 2317 103 0 0 chr15 53421619 53421920 -47958601 - AluSq SINE Alu -10 303 3 356 345 54 32 chr15 53421944 53422222 -47958299 + MLT1J2 LTR MaLR 153 436 -14 408 358 96 19 chr15 53422269 53422646 -47957875 + L2 LINE L2 2215 2620 -694 27 0 0 0 chr15 53422873 53422900 -47957621 + AT_rich Low_complexity Low_complexity 1 27 0 2178 115 3 3 chr15 53423352 53423648 -47956873 + AluSq SINE Alu 1 296 -17 1225 297 35 60 chr15 53423933 53424502 -47956019 + LTR67 LTR ERVL 3 557 0 353 357 70 6 chr15 53425021 53425178 -47955343 + L2 LINE L2 3105 3271 -1 22 0 0 0 chr15 53425939 53425961 -47954560 + AT_rich Low_complexity Low_complexity 1 22 0 327 266 106 39 chr15 53426980 53427213 -47953308 - L1MEd LINE L1 -4906 1213 960 743 191 0 8 chr15 53427213 53427339 -47953182 - FLAM_A SINE Alu -8 125 1 327 266 106 39 chr15 53427339 53427361 -47953160 - L1MEd LINE L1 -5159 960 941 204 216 0 0 chr15 53427520 53427557 -47952964 + (TG)n Simple_repeat Simple_repeat 2 38 0 1184 169 94 91 chr15 53427835 53427877 -47952644 - MSTC LTR MaLR -24 404 364 2378 99 0 0 chr15 53427877 53428180 -47952341 - AluSg SINE Alu -7 303 1 1184 169 94 91 chr15 53428180 53428510 -47952011 - MSTC LTR MaLR -64 364 31 258 272 82 54 chr15 53428662 53428846 -47951675 - L1MEd LINE L1 -5887 232 44 202 185 15 62 chr15 53428920 53428985 -47951536 + A-rich Low_complexity Low_complexity 3 64 0 21 57 0 0 chr15 53429020 53429055 -47951466 + AT_rich Low_complexity Low_complexity 1 35 0 2053 148 0 3 chr15 53429197 53429495 -47951026 + AluJb SINE Alu 1 297 -15 317 220 38 91 chr15 53429496 53429628 -47950893 + L1MC4 LINE L1 7914 8038 -4 309 147 44 0 chr15 53429663 53429731 -47950790 + L1M4 LINE L1 3875 3945 -2201 238 206 44 15 chr15 53429938 53430006 -47950515 - MER96 DNA MER1_type? 0 175 106 264 133 0 22 chr15 53430022 53430067 -47950454 - L1ME LINE L1 -543 5623 5580 5233 249 51 47 chr15 53430069 53431497 -47949024 - L1ME LINE L1 -659 5507 4072 2316 93 0 10 chr15 53431497 53431808 -47948713 - AluSg SINE Alu 0 310 3 5233 249 51 47 chr15 53431808 53432463 -47948058 - L1ME LINE L1 -2094 4072 3421 1111 139 41 0 chr15 53432456 53432650 -47947871 - L1MC2 LINE L1 -511 5833 5632 * 370 345 9 0 chr15 53432652 53432762 -47947759 - MIR SINE MIR -150 112 2 562 101 18 55 chr15 53432927 53433036 -47947485 + L1MB4 LINE L1 6065 6169 -11 594 198 16 2 chr15 53433422 53433572 -47946949 - L1ME LINE L1 -2693 3453 3303 558 264 140 11 chr15 53433681 53433907 -47946614 + MIR SINE MIR 7 258 -4 211 191 0 0 chr15 53434861 53434903 -47945618 + CT-rich Low_complexity Low_complexity 2 43 0 2742 172 20 57 chr15 53435248 53436406 -47944115 + L1MB8 LINE L1 4773 5830 -354 1193 158 49 1 chr15 53436408 53436695 -47943826 + MER2 DNA MER2_type 4 340 -5 1544 156 6 52 chr15 53436700 53437047 -47943474 + L1MB8 LINE L1 5828 6158 -20 1984 147 10 0 chr15 53437102 53437409 -47943112 + AluSx SINE Alu 1 310 -2 276 30 0 0 chr15 53437409 53437442 -47943079 + (GGAA)n Simple_repeat Simple_repeat 2 34 0 335 276 112 0 chr15 53437654 53437770 -47942751 - L2 LINE L2 -4 3309 3181 321 285 101 51 chr15 53437770 53437928 -47942593 - L2 LINE L2 -247 3066 2901 875 178 56 6 chr15 53437928 53438108 -47942413 - MER5A DNA MER1_type 0 189 1 768 232 7 0 chr15 53438162 53438317 -47942204 - MER63A DNA MER1_type 0 210 55 614 272 31 11 chr15 53438329 53438520 -47942001 - L2 LINE L2 -462 2852 2658 372 234 23 70 chr15 53438556 53438684 -47941837 + MLT1J LTR MaLR 78 199 -312 314 236 14 14 chr15 53438970 53439042 -47941479 - L2 LINE L2 -664 2650 2579 267 253 115 52 chr15 53439057 53439231 -47941290 + LTR33A LTR ERVL 2 186 -337 528 160 0 0 chr15 53439233 53439333 -47941188 + CT-rich Low_complexity Low_complexity 3 102 0 207 0 0 0 chr15 53439329 53439352 -47941169 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 427 245 112 0 chr15 53439413 53439556 -47940965 + LTR33A LTR ERVL 365 523 0 236 245 41 0 chr15 53439558 53439656 -47940865 - L2 LINE L2 -738 2576 2475 223 327 137 7 chr15 53439690 53439843 -47940678 + L2 LINE L2 2366 2538 -776 379 279 122 17 chr15 53440264 53440436 -47940085 + MIR SINE MIR 63 252 -10 1902 111 32 87 chr15 53441249 53441627 -47938894 + MLT2D LTR ERVL 1 357 -57 387 0 0 0 chr15 53441627 53441670 -47938851 + (TC)n Simple_repeat Simple_repeat 2 44 0 309 230 0 0 chr15 53442008 53442082 -47938439 + (TA)n Simple_repeat Simple_repeat 1 74 0 32 0 0 0 chr15 53442633 53442665 -47937856 + AT_rich Low_complexity Low_complexity 1 32 0 2218 115 0 3 chr15 53442885 53443189 -47937332 + AluSp SINE Alu 1 303 -10 738 208 42 17 chr15 53443455 53443790 -47936731 - MLT1D LTR MaLR -7 498 84 368 153 59 110 chr15 53443791 53443909 -47936612 + L2 LINE L2 2573 2684 -630 * 991 261 63 35 chr15 53443908 53444226 -47936295 - L2 LINE L2 -946 2368 2042 898 237 9 0 chr15 53444227 53444438 -47936083 + LTR16B LTR ERVL 252 464 0 1644 173 14 14 chr15 53444466 53444761 -47935760 + AluJo SINE Alu 1 295 -17 655 262 47 37 chr15 53444809 53445023 -47935498 - L2 LINE L2 -1545 1769 1554 383 329 28 19 chr15 53445126 53445286 -47935235 - MIR SINE MIR -59 203 42 2198 135 0 6 chr15 53447219 53447531 -47932990 - AluSx SINE Alu -2 310 1 231 234 106 32 chr15 53447560 53447654 -47932867 + L2 LINE L2 3204 3304 -9 480 136 0 12 chr15 53448305 53448386 -47932135 + MER39 LTR ERV1 6 85 -622 1294 153 9 0 chr15 53448386 53448609 -47931912 - MER41C LTR ERV1 0 554 330 2145 160 127 55 chr15 53448643 53448788 -47931733 + MER39 LTR ERV1 94 227 -480 1570 191 14 3 chr15 53448788 53449076 -47931445 + AluJo SINE Alu 11 301 -11 2145 160 127 55 chr15 53449076 53449304 -47931217 + MER39 LTR ERV1 227 437 -270 1889 128 59 0 chr15 53449304 53449593 -47930928 + AluSx SINE Alu 1 306 -6 2145 160 127 55 chr15 53449593 53449787 -47930734 + MER39 LTR ERV1 437 703 -4 2589 150 71 4 chr15 53450327 53450820 -47929701 - LTR48B LTR ERV1 0 644 119 4703 115 20 43 chr15 53451409 53452829 -47927692 + pTR5 LTR ERV1 743 2438 0 2103 116 14 7 chr15 53453248 53453541 -47926980 + AluSx SINE Alu 1 295 -17 2182 167 0 31 chr15 53453630 53453999 -47926522 + MER41B LTR ERV1 150 505 -130 1936 145 0 0 chr15 53453999 53454309 -47926212 - AluSx SINE Alu 0 310 1 2182 167 0 31 chr15 53454309 53454382 -47926139 + MER41B LTR ERV1 505 579 -56 466 226 169 16 chr15 53454558 53454748 -47925773 + MIR SINE MIR 32 256 -6 263 347 104 52 chr15 53454974 53455242 -47925279 - L2 LINE L2 -3 3269 2988 4178 129 3 2 chr15 53455300 53455934 -47924587 + MER41B LTR ERV1 1 635 0 254 240 70 30 chr15 53455963 53456063 -47924458 - MLT1J LTR MaLR -22 489 386 3735 109 72 5 chr15 53456187 53456781 -47923740 + MER41B LTR ERV1 1 634 -1 260 261 29 0 chr15 53456806 53456875 -47923646 - MLT1L LTR MaLR -335 280 210 198 0 0 0 chr15 53457180 53457202 -47923319 + (A)n Simple_repeat Simple_repeat 1 22 0 603 150 20 0 chr15 53457205 53457305 -47923216 - FLAM_A SINE Alu -20 122 21 2017 138 0 22 chr15 53457776 53458095 -47922426 - AluJb SINE Alu 0 312 1 285 65 87 11 chr15 53458137 53458229 -47922292 + (TA)n Simple_repeat Simple_repeat 2 100 0 300 134 42 21 chr15 53458332 53458474 -47922047 + (TA)n Simple_repeat Simple_repeat 2 146 0 1747 254 118 51 chr15 53458495 53459435 -47921086 - HAL1 LINE L1 -398 2109 1060 2146 110 34 0 chr15 53459435 53459726 -47920795 - AluSg SINE Alu -7 303 3 1747 254 118 51 chr15 53459726 53460058 -47920463 - HAL1 LINE L1 -1447 1060 752 1484 199 17 10 chr15 53460324 53460621 -47919900 + MER47B DNA MER2_type 2 300 -118 7120 60 3 0 chr15 53460621 53462057 -47918464 + L1PA8 LINE L1 4713 6159 -13 628 139 15 80 chr15 53462382 53462434 -47918087 + MER47B DNA MER2_type 291 345 -1978 1637 214 3 3 chr15 53462434 53462737 -47917784 - AluJo SINE Alu -9 303 1 628 139 15 80 chr15 53462737 53462821 -47917700 + MER47B DNA MER2_type 345 418 0 432 247 26 2 chr15 53462925 53463050 -47917471 - L1MC/D LINE L1 -469 5652 5540 21 36 0 0 chr15 53463185 53463213 -47917308 + AT_rich Low_complexity Low_complexity 1 28 0 5956 116 0 0 chr15 53463318 53464566 -47915955 - L1PA16 LINE L1 0 6166 4925 5707 175 8 8 chr15 53464566 53465720 -47914801 + L1PA16 LINE L1 3796 4949 -1197 302 156 42 73 chr15 53465866 53465962 -47914559 - L1MC/D LINE L1 -322 5799 5724 371 326 79 45 chr15 53466062 53466353 -47914168 - L3 LINE CR1 -353 1224 924 362 324 45 34 chr15 53466373 53466552 -47913969 + L3 LINE CR1 708 888 -689 198 167 83 0 chr15 53466613 53466661 -47913860 - L3 LINE CR1 -581 996 945 354 328 76 0 chr15 53467181 53467300 -47913221 + L3 LINE CR1 980 1107 -470 1538 148 16 4 chr15 53467300 53467550 -47912971 - MLT1B LTR MaLR 0 390 138 2250 113 10 0 chr15 53467752 53468076 -47912445 + AluSq SINE Alu 1 327 0 870 143 0 26 chr15 53468124 53468167 -47912354 - MLT1B LTR MaLR -240 150 107 2339 88 0 16 chr15 53468167 53468474 -47912047 - AluSx SINE Alu -8 304 3 870 143 0 26 chr15 53468474 53468584 -47911937 - MLT1B LTR MaLR -283 107 1 405 227 0 0 chr15 53468873 53468948 -47911573 + MIR3 SINE MIR 127 201 -7 30 27 0 0 chr15 53468959 53468996 -47911525 + AT_rich Low_complexity Low_complexity 1 37 0 345 169 0 0 chr15 53470098 53470157 -47910364 - MLT1G1 LTR MaLR 0 595 537 889 199 17 6 chr15 53470158 53470334 -47910187 - MER58A DNA MER1_type -4 220 43 1554 166 91 11 chr15 53470337 53470602 -47909919 + AluJo SINE Alu 1 286 -26 313 254 207 37 chr15 53470717 53471080 -47909441 - MLT1H LTR MaLR -92 503 72 1640 146 91 11 chr15 53471525 53471799 -47908722 + AluJb SINE Alu 6 301 -11 1896 214 126 10 chr15 53471823 53472401 -47908120 - L1MC4 LINE L1 -674 7368 6724 2097 131 0 0 chr15 53472411 53472701 -47907820 - AluSx SINE Alu -22 290 1 1180 246 62 0 chr15 53473025 53473330 -47907191 + LTR16C LTR ERVL 168 491 0 248 269 134 25 chr15 53473673 53473792 -47906729 + L2 LINE L2 3182 3313 0 23 0 0 0 chr15 53473929 53473952 -47906569 + AT_rich Low_complexity Low_complexity 1 23 0 292 211 40 0 chr15 53474426 53474502 -47906019 + MLT1K LTR MaLR 492 570 -18 1547 178 25 4 chr15 53474635 53474910 -47905611 + AluJo SINE Alu 22 302 -10 270 56 0 0 chr15 53474910 53474946 -47905575 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 465 353 69 30 chr15 53475345 53475679 -47904842 + L2 LINE L2 2319 2665 -649 269 309 117 11 chr15 53475833 53475927 -47904594 + MLT1K LTR MaLR 42 145 -443 286 289 19 10 chr15 53475971 53476075 -47904446 + MLT1K LTR MaLR 142 246 -342 428 147 15 0 chr15 53477548 53477616 -47902905 - Tigger7 DNA MER2_type -8 2579 2511 2869 184 19 2 chr15 53477626 53478142 -47902379 - Tigger7 DNA MER2_type -1961 526 2 1886 147 3 0 chr15 53478503 53478789 -47901732 + AluJo SINE Alu 1 287 -25 2452 132 38 73 chr15 53478803 53479326 -47901195 + L1MB3 LINE L1 5679 6183 0 261 132 0 0 chr15 53479326 53479379 -47901142 + L1MB3 LINE L1 6131 6183 0 375 259 12 12 chr15 53479473 53479558 -47900963 - L2 LINE L2 -37 3276 3192 930 282 80 17 chr15 53479667 53480018 -47900503 - MLT1J LTR MaLR -138 373 1 273 279 53 128 chr15 53480181 53480557 -47899964 - MLT1G1-int LTR MaLR -184 1187 840 502 332 20 0 chr15 53480933 53481183 -47899338 - MLT1G1-int LTR MaLR -832 539 285 249 254 93 8 chr15 53481185 53481303 -47899218 - MLT1G1-int LTR MaLR -1235 136 9 1231 261 156 16 chr15 53481309 53481822 -47898699 - MLT1G1 LTR MaLR 0 595 11 274 246 14 0 chr15 53481834 53481903 -47898618 + LTR16A1 LTR ERVL 380 449 -8 2250 153 57 39 chr15 53481903 53482362 -47898159 - MLT1C LTR MaLR 0 467 1 2278 150 81 25 chr15 53482401 53482622 -47897899 + MER61D LTR ERV1 30 237 -264 2252 116 73 14 chr15 53482622 53482966 -47897555 + THE1B LTR MaLR 1 364 0 2278 150 81 25 chr15 53482966 53483191 -47897330 + MER61D LTR ERV1 237 501 0 2356 110 0 0 chr15 53483219 53483528 -47896993 + AluSx SINE Alu 3 311 -1 217 302 167 10 chr15 53483529 53483625 -47896896 + MIR SINE MIR 151 261 -1 215 255 0 0 chr15 53483627 53483674 -47896847 + L2 LINE L2 3193 3239 -33 229 283 0 0 chr15 53483679 53483739 -47896782 + MLT1K LTR MaLR 3 62 -526 756 317 44 30 chr15 53485516 53485882 -47894639 + MLT1K LTR MaLR 56 426 -162 919 259 73 75 chr15 53485948 53486469 -47894052 + LTR67 LTR ERVL 29 548 -9 331 308 45 30 chr15 53486526 53486658 -47893863 - MIR SINE MIR -88 174 42 284 171 0 53 chr15 53487404 53487480 -47893041 - LTR33 LTR ERVL 0 521 450 1891 119 3 59 chr15 53487489 53487814 -47892707 + AluSx SINE Alu 1 308 0 649 123 160 0 chr15 53487852 53487958 -47892563 - FLAM_C SINE Alu -10 123 1 367 243 97 28 chr15 53488015 53488159 -47892362 - LTR33 LTR ERVL -164 357 204 326 191 155 0 chr15 53488235 53488319 -47892202 - LTR33 LTR ERVL -424 97 1 2391 85 13 0 chr15 53488418 53488724 -47891797 - AluSx SINE Alu -2 310 1 410 371 27 11 chr15 53488801 53488987 -47891534 - MIR3 SINE MIR -4 204 16 823 159 31 45 chr15 53490051 53490247 -47890274 - MER31B LTR ERV1 -302 164 1 282 160 0 0 chr15 53490311 53490361 -47890160 + GA-rich Low_complexity Low_complexity 3 52 0 360 195 187 8 chr15 53490435 53490558 -47889963 - MARNA DNA Mariner -249 337 193 282 267 167 11 chr15 53490558 53490648 -47889873 - MER81 DNA DNA 0 114 11 226 208 0 19 chr15 53490724 53490777 -47889744 + MARNA DNA Mariner 397 448 -138 22 0 0 0 chr15 53491013 53491035 -47889486 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr15 53491142 53491175 -47889346 + (TG)n Simple_repeat Simple_repeat 1 33 0 2482 269 96 27 chr15 53492091 53493132 -47887389 + L2 LINE L2 1383 2495 -819 740 216 41 5 chr15 53495333 53495527 -47884994 - MER3 DNA MER1_type -4 205 5 1895 149 21 0 chr15 53495576 53495864 -47884657 - AluSx SINE Alu -18 294 1 591 259 86 0 chr15 53496011 53496173 -47884348 - MER45A DNA AcHobo -1 177 2 2182 121 7 0 chr15 53496674 53496972 -47883549 + AluSq SINE Alu 11 310 -3 1939 137 38 10 chr15 53497625 53497918 -47882603 + AluSx SINE Alu 1 301 -11 763 155 23 0 chr15 53497977 53498106 -47882415 + AluSg/x SINE Alu 180 311 -1 342 262 157 56 chr15 53498116 53498402 -47882119 + L1ME LINE L1 2128 2442 -3704 411 268 114 87 chr15 53498630 53499703 -47880818 + L1ME LINE L1 2675 3776 -2370 689 298 43 10 chr15 53500192 53500491 -47880030 - MLT1J LTR MaLR -200 311 3 339 344 51 27 chr15 53500501 53500757 -47879764 + L1ME LINE L1 4009 4270 -1876 324 0 0 0 chr15 53500815 53500851 -47879670 + (TG)n Simple_repeat Simple_repeat 1 36 0 2228 120 0 7 chr15 53501239 53501540 -47878981 + AluSx SINE Alu 1 299 -13 234 257 48 9 chr15 53501649 53501754 -47878767 + L1ME LINE L1 4908 5016 -1130 866 275 43 36 chr15 53501975 53502463 -47878058 + L1ME LINE L1 5257 5751 -411 1788 174 3 16 chr15 53502481 53502791 -47877730 + AluJb SINE Alu 5 310 -2 24 53 0 0 chr15 53503316 53503354 -47877167 + AT_rich Low_complexity Low_complexity 1 38 0 2267 113 0 10 chr15 53505081 53505390 -47875131 + AluSg SINE Alu 1 306 -4 345 325 31 55 chr15 53505440 53505603 -47874918 - MIR3 SINE MIR -16 192 34 217 343 14 21 chr15 53505829 53505972 -47874549 + L2 LINE L2 2814 2955 -317 475 355 46 55 chr15 53506052 53506399 -47874122 - L2 LINE L2 -1 3271 2928 215 216 0 0 chr15 53507385 53507422 -47873099 + (TG)n Simple_repeat Simple_repeat 2 38 0 544 276 36 55 chr15 53507960 53508235 -47872286 + MLT1K LTR MaLR 234 503 -85 423 56 0 0 chr15 53508541 53508595 -47871926 + (TA)n Simple_repeat Simple_repeat 2 55 0 298 319 83 35 chr15 53508742 53508886 -47871635 - L2 LINE L2 0 3272 3122 21 0 0 0 chr15 53509240 53509261 -47871260 + AT_rich Low_complexity Low_complexity 1 21 0 373 318 108 0 chr15 53509847 53509976 -47870545 - MIR3 SINE MIR -22 186 44 1745 164 63 0 chr15 53510236 53510522 -47869999 - AluJo SINE Alu -8 304 1 27 0 0 0 chr15 53511105 53511132 -47869389 + AT_rich Low_complexity Low_complexity 1 27 0 1962 150 3 0 chr15 53511209 53511503 -47869018 - AluSx SINE Alu -17 295 1 704 288 88 25 chr15 53512038 53512358 -47868163 + L2 LINE L2 2194 2533 -781 391 281 30 43 chr15 53512384 53512548 -47867973 + L1ME LINE L1 5615 5776 -345 21 57 0 0 chr15 53512609 53512644 -47867877 + AT_rich Low_complexity Low_complexity 1 35 0 963 204 26 48 chr15 53512646 53512960 -47867561 - L1MA9 LINE L1 -42 6270 5971 1047 312 64 35 chr15 53512977 53514026 -47866495 + L1MEd LINE L1 357 1531 -1045 334 286 0 0 chr15 53514087 53514199 -47866322 + L1MEd LINE L1 1583 1694 -4702 24 0 0 0 chr15 53514339 53514363 -47866158 + AT_rich Low_complexity Low_complexity 1 24 0 612 327 46 13 chr15 53514644 53514950 -47865571 - LTR33 LTR ERVL 0 521 206 309 230 46 11 chr15 53514985 53515072 -47865449 - LTR33 LTR ERVL -389 132 43 627 270 38 96 chr15 53515112 53515226 -47865295 + L1MEd LINE L1 2197 2316 -4080 2039 106 3 27 chr15 53515226 53515562 -47864959 - AluSx SINE Alu 0 329 1 627 270 38 96 chr15 53515562 53515791 -47864730 + L1MEd LINE L1 2316 2521 -3875 541 217 54 8 chr15 53515797 53515926 -47864595 + MER63 DNA MER1_type 4 764 -72 296 251 94 21 chr15 53516108 53516299 -47864222 + L1MC4 LINE L1 7703 7907 -135 235 217 0 0 chr15 53516333 53516379 -47864142 + CT-rich Low_complexity Low_complexity 3 48 0 1121 272 80 61 chr15 53516380 53517104 -47863417 + L1ME3 LINE L1 47 784 -5758 299 314 12 0 chr15 53517124 53517210 -47863311 + CT-rich Low_complexity Low_complexity 2 88 0 1471 220 91 37 chr15 53517212 53517774 -47862747 + L1ME3 LINE L1 1866 2463 -4183 1696 59 0 51 chr15 53517774 53518010 -47862511 - AluY SINE Alu -3 308 85 1471 220 91 37 chr15 53518010 53518042 -47862479 + L1ME3 LINE L1 2463 2492 -4154 587 121 0 0 chr15 53518044 53518127 -47862394 + FRAM SINE Alu 72 154 -22 398 161 9 27 chr15 53518131 53518243 -47862278 + L1ME3 LINE L1 2485 2594 -4052 4264 133 3 9 chr15 53518760 53519446 -47861075 - L1PB4 LINE L1 0 6156 5475 689 152 18 88 chr15 53519496 53519614 -47860907 + L1ME3 LINE L1 2582 2707 -4000 214 65 0 0 chr15 53519614 53519645 -47860876 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2326 89 0 0 chr15 53519645 53519927 -47860594 - AluSc SINE Alu -27 282 1 689 152 18 88 chr15 53519927 53520023 -47860498 + L1ME3 LINE L1 2705 2823 -3884 1490 187 57 76 chr15 53520028 53520197 -47860324 + MLT1C LTR MaLR 6 177 -290 1220 163 0 184 chr15 53520197 53520566 -47859955 + AluJo SINE Alu 1 301 -1 1490 187 57 76 chr15 53520566 53520867 -47859654 + MLT1C LTR MaLR 177 467 0 1961 216 31 63 chr15 53520867 53521197 -47859324 + L1MB5 LINE L1 2779 3118 -3526 1510 88 17 58 chr15 53521197 53521437 -47859084 - MER30 DNA MER1_type 0 230 1 1961 216 31 63 chr15 53521437 53521852 -47858669 + L1MB5 LINE L1 3118 3500 -3144 1555 168 90 0 chr15 53521881 53522149 -47858372 + AluJb SINE Alu 5 296 -16 180 0 0 0 chr15 53522178 53522198 -47858323 + (TAA)n Simple_repeat Simple_repeat 2 21 0 6209 196 49 20 chr15 53522200 53523361 -47857160 + L1MB5 LINE L1 4000 5126 -1546 2140 113 10 0 chr15 53523361 53523662 -47856859 + AluSq SINE Alu 1 304 -9 6209 196 49 20 chr15 53523662 53524204 -47856317 + L1MB5 LINE L1 5126 5651 -1021 2086 93 33 37 chr15 53524204 53524504 -47856017 + AluSg SINE Alu 1 299 -11 6209 196 49 20 chr15 53524504 53525397 -47855124 + L1MB5 LINE L1 5651 6672 0 385 333 60 15 chr15 53525596 53525863 -47854658 + L1ME3 LINE L1 2980 3258 -3386 552 178 0 10 chr15 53526105 53526206 -47854315 - FLAM_C SINE Alu -11 132 33 483 279 68 76 chr15 53526313 53526674 -47853847 + L1ME3 LINE L1 3613 3975 -2669 1929 127 34 0 chr15 53526674 53526965 -47853556 + AluSx SINE Alu 1 301 -11 483 279 68 76 chr15 53526965 53527009 -47853512 + L1ME3 LINE L1 3975 4018 -2626 468 48 0 0 chr15 53527009 53527072 -47853449 + (CA)n Simple_repeat Simple_repeat 1 63 0 483 279 68 76 chr15 53527072 53527322 -47853199 + L1ME3 LINE L1 4018 4264 -2380 464 268 22 7 chr15 53527397 53527535 -47852986 + MER63A DNA MER1_type 48 187 -23 595 288 68 3 chr15 53527541 53527852 -47852669 + L1ME3 LINE L1 5358 5698 -946 289 342 83 51 chr15 53528020 53528371 -47852150 + L2 LINE L2 1752 2113 -1201 212 146 49 0 chr15 53528403 53528444 -47852077 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 341 250 26 79 chr15 53528445 53528597 -47851924 - HAL1b LINE L1 -12 1336 1193 476 283 82 45 chr15 53528702 53528943 -47851578 - MIR SINE MIR 0 262 17 439 292 137 35 chr15 53529092 53529458 -47851063 - MLT1L LTR MaLR -210 405 3 668 267 66 18 chr15 53529481 53529754 -47850767 - L1ME LINE L1 -336 5785 5500 250 367 20 0 chr15 53529982 53530080 -47850441 + L2 LINE L2 3160 3259 -13 381 299 101 66 chr15 53530080 53530445 -47850076 - L1ME4a LINE L1 -197 5924 5547 2519 76 0 16 chr15 53530446 53530760 -47849761 - AluSq SINE Alu -4 309 1 225 277 92 29 chr15 53530784 53531022 -47849499 - L1ME4a LINE L1 -723 5519 5267 264 317 30 30 chr15 53531222 53531323 -47849198 + L2 LINE L2 2622 2722 -592 624 273 32 32 chr15 53531584 53531837 -47848684 + L1ME3 LINE L1 6164 6416 -244 1365 187 43 126 chr15 53531858 53532155 -47848366 + L1PB2 LINE L1 5138 5458 -693 2084 124 6 40 chr15 53532155 53532477 -47848044 + AluSq SINE Alu 1 311 -2 1365 187 43 126 chr15 53532477 53532562 -47847959 + L1PB2 LINE L1 5458 5548 -603 2250 109 0 3 chr15 53532562 53532873 -47847648 + AluSg SINE Alu 1 310 0 1365 187 43 126 chr15 53532873 53533689 -47846832 + L1PB2 LINE L1 5548 5937 -214 3529 120 53 61 chr15 53532873 53533200 -47847321 + L1MA8 LINE L1 5432 5760 -531 2296 101 0 10 chr15 53533200 53533506 -47847015 + AluSx SINE Alu 1 303 -9 3529 120 53 61 chr15 53533506 53533913 -47846608 + L1MA8 LINE L1 5760 6160 -131 * 5792 90 24 39 chr15 53533907 53534869 -47845652 + L1MA2 LINE L1 5353 6300 -4 737 114 15 0 chr15 53534889 53535020 -47845501 + L1MA8 LINE L1 6158 6290 -1 1609 246 27 14 chr15 53535034 53535659 -47844862 + L1M4 LINE L1 2148 2780 -3366 * 5272 204 36 69 chr15 53535658 53535784 -47844737 + L1M4 LINE L1 3087 3216 -2930 1989 149 0 0 chr15 53535784 53536073 -47844448 + AluJo SINE Alu 12 300 -12 5272 204 36 69 chr15 53536073 53536358 -47844163 + L1M4 LINE L1 3216 3509 -2637 1656 128 0 16 chr15 53536358 53536601 -47843920 + AluSq SINE Alu 1 239 -74 5272 204 36 69 chr15 53536601 53538095 -47842426 + L1M4 LINE L1 3509 4930 -1216 1922 119 3 33 chr15 53538265 53538568 -47841953 + AluSx SINE Alu 1 294 -18 264 248 30 0 chr15 53538615 53538716 -47841805 + L1M LINE L1 5325 5428 -931 246 268 244 0 chr15 53539056 53539138 -47841383 - MIR SINE MIR -43 219 118 435 149 0 0 chr15 53539148 53539215 -47841306 - Charlie3 DNA MER1_type 0 2711 2645 277 240 45 0 chr15 53539515 53539582 -47840939 + MIR SINE MIR 34 100 -108 214 261 204 23 chr15 53540050 53540138 -47840383 + L2 LINE L2 3169 3272 0 2005 147 17 20 chr15 53541220 53541568 -47838953 - MER7A DNA MER2_type 0 346 2 406 245 49 0 chr15 53541631 53541733 -47838788 - MER91C DNA MER1_type 0 140 34 722 205 9 112 chr15 53541939 53542022 -47838499 - MIR SINE MIR 0 262 172 2334 75 0 32 chr15 53542022 53542330 -47838191 - AluY SINE Alu -13 298 1 722 205 9 112 chr15 53542330 53542461 -47838060 - MIR SINE MIR -90 172 70 1825 159 3 34 chr15 53542648 53542969 -47837552 + AluJb SINE Alu 1 311 -1 206 304 51 25 chr15 53544782 53544861 -47835660 - L2 LINE L2 -8 3305 3225 268 323 43 0 chr15 53544904 53544997 -47835524 - L2 LINE L2 -816 2498 2402 537 266 78 115 chr15 53545004 53545527 -47834994 + MLT1J LTR MaLR 7 510 -1 831 138 24 95 chr15 53545815 53545884 -47834637 - Tigger6 DNA MER2_type -16 1581 1509 2236 91 3 3 chr15 53545884 53546169 -47834352 + AluSc SINE Alu 1 285 -24 831 138 24 95 chr15 53546169 53546308 -47834213 - Tigger6 DNA MER2_type -88 1509 1388 879 137 7 14 chr15 53546308 53546454 -47834067 - Tigger7 DNA MER2_type -1 2490 2346 852 148 0 0 chr15 53546454 53546576 -47833945 + FLAM_C SINE Alu 2 123 -10 257 227 21 165 chr15 53546671 53546865 -47833656 - L2 LINE L2 -36 3277 3112 475 227 32 19 chr15 53546954 53547108 -47833413 + L1MC4 LINE L1 7421 7576 -466 1600 134 0 4 chr15 53547474 53547712 -47832809 + AluSx SINE Alu 59 295 -17 1547 160 69 45 chr15 53547715 53548003 -47832518 + AluJo SINE Alu 1 295 -17 1356 156 46 66 chr15 53548003 53548061 -47832460 - Charlie1a DNA MER1_type -1423 1338 1280 1952 132 3 26 chr15 53548061 53548409 -47832112 + L1MB3 LINE L1 5842 6181 -2 1356 156 46 66 chr15 53548409 53548547 -47831974 - Charlie1a DNA MER1_type -1481 1280 1141 2194 74 78 0 chr15 53548547 53548830 -47831691 + AluSx SINE Alu 1 305 -7 1356 156 46 66 chr15 53548830 53549024 -47831497 - Charlie1a DNA MER1_type -1620 1141 955 2160 125 0 0 chr15 53549039 53549334 -47831187 + AluY SINE Alu 1 295 -16 1822 212 50 13 chr15 53549335 53549798 -47830723 - Charlie1a DNA MER1_type -648 807 328 1543 261 80 33 chr15 53549800 53550043 -47830478 + L1M4 LINE L1 3957 4187 -1959 2294 114 0 0 chr15 53550043 53550349 -47830172 + AluSg SINE Alu 1 306 -4 1543 261 80 33 chr15 53550349 53550809 -47829712 + L1M4 LINE L1 4187 4693 -1453 1532 203 4 4 chr15 53550870 53551175 -47829346 - AluJo SINE Alu 0 306 2 1139 232 43 65 chr15 53551177 53551522 -47828999 + L1ME3 LINE L1 3325 3676 -2470 1864 223 3 8 chr15 53551522 53551912 -47828609 + MLT1B LTR MaLR 3 390 0 1139 232 43 65 chr15 53551912 53553198 -47827323 + L1ME3 LINE L1 3676 5117 -1029 475 194 25 134 chr15 53553213 53553307 -47827214 - Charlie1a DNA MER1_type -2576 185 122 2054 123 0 0 chr15 53553307 53553623 -47826898 + AluSx SINE Alu 1 316 0 475 194 25 134 chr15 53553623 53553728 -47826793 - Charlie1a DNA MER1_type -2639 122 7 695 213 121 56 chr15 53553739 53553988 -47826533 + L1ME3 LINE L1 5807 6071 -91 21 36 0 0 chr15 53554022 53554050 -47826471 + AT_rich Low_complexity Low_complexity 1 28 0 233 274 24 0 chr15 53554050 53554134 -47826387 - Charlie2 DNA MER1_type -335 2527 2442 249 284 54 0 chr15 53554372 53554446 -47826075 - L2 LINE L2 0 3272 3195 277 303 184 0 chr15 53555542 53555651 -47824870 + L2 LINE L2 3143 3271 -1 1405 193 12 72 chr15 53556176 53556298 -47824223 + AluJo SINE Alu 1 129 -183 2369 79 0 0 chr15 53556298 53556588 -47823933 - AluSg SINE Alu -20 290 1 1405 193 12 72 chr15 53556588 53556786 -47823735 + AluJo SINE Alu 129 302 -10 248 130 22 0 chr15 53556809 53556855 -47823666 + G-rich Low_complexity Low_complexity 4 50 0 272 274 85 9 chr15 53557068 53557174 -47823347 + MLT1L LTR MaLR 171 284 -331 321 155 0 0 chr15 53557182 53557240 -47823281 + GA-rich Low_complexity Low_complexity 1 58 0 539 298 37 28 chr15 53557307 53557525 -47822996 + MLT1L LTR MaLR 372 591 -24 27 0 0 0 chr15 53559249 53559276 -47821245 + GC_rich Low_complexity Low_complexity 1 27 0 302 284 103 73 chr15 53559335 53559539 -47820982 - L1M2 LINE L1 -5881 968 759 1065 304 38 56 chr15 53560132 53560635 -47819886 - L2 LINE L2 0 3313 2820 201 358 72 41 chr15 53560892 53561280 -47819241 + L2 LINE L2 2271 2670 -644 1914 126 3 48 chr15 53561394 53561704 -47818817 - AluJb SINE Alu -16 296 1 394 279 38 13 chr15 53561876 53562034 -47818487 - MLT1K LTR MaLR -6 582 421 647 130 30 10 chr15 53562034 53562134 -47818387 + AluSg/x SINE Alu 197 298 -14 369 269 31 31 chr15 53562207 53562337 -47818184 - MLT1K LTR MaLR -323 265 136 578 286 107 18 chr15 53563079 53563415 -47817106 + MLT1J2 LTR MaLR 65 395 -55 2259 120 3 0 chr15 53563477 53563786 -47816735 - AluSq SINE Alu -3 310 1 670 258 104 21 chr15 53564628 53564868 -47815653 - MLT1K LTR MaLR -109 479 220 1395 271 105 0 chr15 53565213 53565659 -47814862 - LTR33 LTR ERVL -28 493 1 235 104 0 62 chr15 53566517 53566565 -47813956 - L2 LINE L2 0 3272 3228 468 256 188 0 chr15 53566602 53566735 -47813786 - MER5A DNA MER1_type -1 188 31 2262 140 14 8 chr15 53566915 53567279 -47813242 - MER47A DNA MER2_type 0 366 1 922 242 43 3 chr15 53567291 53567571 -47812950 + L1MB7 LINE L1 5884 6173 -11 366 286 9 38 chr15 53567618 53567723 -47812798 - MIR SINE MIR -113 149 48 831 270 109 72 chr15 53567960 53568463 -47812058 - LTR67 LTR ERVL -11 546 25 383 281 47 53 chr15 53568522 53568586 -47811935 + MER5A DNA MER1_type 14 77 -112 2534 54 0 16 chr15 53568586 53568902 -47811619 + AluY SINE Alu 1 311 0 383 281 47 53 chr15 53568902 53568957 -47811564 + MER5A DNA MER1_type 77 134 -55 2559 111 3 14 chr15 53568957 53569325 -47811196 + THE1B LTR MaLR 1 364 0 383 281 47 53 chr15 53569325 53569375 -47811146 + MER5A DNA MER1_type 134 183 -6 838 98 55 31 chr15 53569455 53569618 -47810903 - MER53 DNA DNA 0 189 23 6369 93 7 10 chr15 53570083 53571130 -47809391 + L1PA10 LINE L1 5120 6163 -5 1746 163 27 7 chr15 53571282 53571577 -47808944 + AluJb SINE Alu 1 301 -11 2076 93 64 0 chr15 53572052 53572332 -47808189 - AluSx SINE Alu -14 298 1 1652 160 5 97 chr15 53572427 53572809 -47807712 - MER7A DNA MER2_type -1 345 1 982 193 0 0 chr15 53572921 53573092 -47807429 + AluJb SINE Alu 134 304 -8 1522 204 60 73 chr15 53573106 53573733 -47806788 + L1MC5 LINE L1 6805 7424 -533 1826 195 0 0 chr15 53573733 53574040 -47806481 + AluJo SINE Alu 1 307 -5 364 67 33 0 chr15 53574044 53574104 -47806417 + (GGAA)n Simple_repeat Simple_repeat 1 62 0 789 227 80 33 chr15 53574104 53574469 -47806052 + L1MC5 LINE L1 7412 7793 -168 284 155 24 48 chr15 53574476 53574560 -47805961 + L1MC5 LINE L1 7835 7916 -45 255 275 39 51 chr15 53574567 53574745 -47805776 + L1ME4a LINE L1 5887 6062 -59 990 111 0 22 chr15 53575059 53575194 -47805327 + AluSx SINE Alu 1 132 -181 6147 40 8 0 chr15 53575194 53575989 -47804532 - L1PA5 LINE L1 -1620 4526 3726 7375 44 0 0 chr15 53575989 53577624 -47802897 + L1PA5 LINE L1 4515 6153 -1 1139 193 0 0 chr15 53577654 53577846 -47802675 + AluSx SINE Alu 121 312 0 259 265 80 31 chr15 53578542 53578704 -47801817 - L1M2 LINE L1 -743 5557 5388 1572 114 14 0 chr15 53580587 53580798 -47799723 + AluJo SINE Alu 84 297 -15 791 181 0 114 chr15 53580967 53581028 -47799493 - MER5A DNA MER1_type -3 186 120 2211 86 3 20 chr15 53581028 53581332 -47799189 + AluSc SINE Alu 1 299 -10 791 181 0 114 chr15 53581332 53581480 -47799041 - MER5A DNA MER1_type -69 120 1 1241 112 0 0 chr15 53581661 53581830 -47798691 - AluSq SINE Alu 0 313 145 300 268 70 14 chr15 53581830 53581972 -47798549 + HAL1 LINE L1 805 954 -1553 749 184 0 15 chr15 53582146 53582282 -47798239 + AluSq/x SINE Alu 1 134 -179 578 276 83 33 chr15 53582317 53582715 -47797806 + HAL1 LINE L1 1142 1559 -948 996 173 18 0 chr15 53582715 53582883 -47797638 - FAM SINE Alu -1 174 4 2054 128 23 7 chr15 53583007 53583311 -47797210 + AluSx SINE Alu 1 309 -3 442 264 24 24 chr15 53583466 53583591 -47796930 + L2 LINE L2 3188 3312 -1 1695 183 7 7 chr15 53583799 53584084 -47796437 - AluJo SINE Alu -16 296 12 1310 156 10 0 chr15 53584139 53584338 -47796183 - AluJo SINE Alu -107 205 5 2045 134 7 3 chr15 53584646 53584953 -47795568 + AluSx SINE Alu 1 308 -4 2067 140 0 3 chr15 53584962 53585254 -47795267 + AluJb SINE Alu 1 291 -21 384 233 12 0 chr15 53585262 53585348 -47795173 - HAL1 LINE L1 -2419 88 2 243 237 17 17 chr15 53585356 53585415 -47795106 - L2 LINE L2 0 3313 3255 1925 150 7 3 chr15 53586012 53586306 -47794215 - AluJb SINE Alu -17 295 1 1670 193 3 14 chr15 53586737 53587032 -47793489 + AluJb SINE Alu 2 293 -19 208 364 82 0 chr15 53587032 53587142 -47793379 + L2 LINE L2 3187 3305 -8 249 357 92 10 chr15 53587485 53587583 -47792938 - L2 LINE L2 -30 3242 3137 628 176 32 0 chr15 53587830 53587955 -47792566 + MSTD LTR MaLR 1 129 -267 799 176 33 7 chr15 53587978 53588131 -47792390 + MSTD LTR MaLR 240 396 0 2196 100 3 3 chr15 53588338 53588638 -47791883 + AluSx SINE Alu 1 300 -12 251 179 160 38 chr15 53588799 53588905 -47791616 - MLT1L LTR MaLR -331 284 166 736 161 213 14 chr15 53589233 53589444 -47791077 - MER2 DNA MER2_type -92 253 1 28 48 0 0 chr15 53590875 53590917 -47789604 + GC_rich Low_complexity Low_complexity 1 42 0 331 322 81 81 chr15 53591013 53591361 -47789160 - L1M2 LINE L1 -5729 1120 773 30 45 0 0 chr15 53591490 53591534 -47788987 + GC_rich Low_complexity Low_complexity 1 44 0 210 37 0 0 chr15 53591973 53592000 -47788521 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 198 0 0 0 chr15 53592430 53592452 -47788069 + (TG)n Simple_repeat Simple_repeat 2 23 0 21 82 0 0 chr15 53593480 53593529 -47786992 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr15 53593565 53593589 -47786932 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr15 53593826 53593872 -47786649 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr15 53594843 53594875 -47785646 + AT_rich Low_complexity Low_complexity 1 32 0 1054 203 18 5 chr15 53596062 53596279 -47784242 - L1MD1 LINE L1 -14 6228 6009 2086 133 0 10 chr15 53596859 53597160 -47783361 + AluSx SINE Alu 1 298 -14 2093 120 0 3 chr15 53597977 53598268 -47782253 + AluSx SINE Alu 6 295 -17 845 257 10 5 chr15 53598641 53598847 -47781674 + MIR SINE MIR 32 238 -24 362 286 136 0 chr15 53599214 53599368 -47781153 - L1ME4a LINE L1 0 6121 5947 321 249 72 64 chr15 53599393 53599642 -47780879 - L1ME4a LINE L1 -225 5896 5646 587 294 41 5 chr15 53600005 53600202 -47780319 + MIR SINE MIR 1 204 -58 282 303 0 0 chr15 53600314 53600390 -47780131 - MIR SINE MIR -1 261 186 438 225 70 2 chr15 53602707 53602976 -47777545 + MER46C DNA MER2_type 2 334 -4 189 0 0 0 chr15 53604504 53604525 -47775996 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1669 145 72 4 chr15 53604529 53604791 -47775730 - AluSg SINE Alu -30 280 1 394 254 45 27 chr15 53605429 53605591 -47774930 + MIR SINE MIR 20 184 -62 34 89 0 0 chr15 53605810 53605900 -47774621 + AT_rich Low_complexity Low_complexity 1 90 0 934 204 0 0 chr15 53607175 53607356 -47773165 - MLT1B LTR MaLR 0 390 210 6316 150 22 48 chr15 53607423 53609306 -47771215 - L1PB1 LINE L1 -1 6150 4276 494 127 25 0 chr15 53609306 53609385 -47771136 - AluSg/x SINE Alu -17 292 212 6316 150 22 48 chr15 53609385 53609963 -47770558 - L1PB1 LINE L1 -1875 4276 3684 243 125 0 0 chr15 53609963 53610003 -47770518 + (T)n Simple_repeat Simple_repeat 1 40 0 853 187 0 145 chr15 53610013 53610102 -47770419 - L1PB1 LINE L1 -2394 3752 3652 2090 120 30 0 chr15 53610102 53610401 -47770120 - AluSc SINE Alu -1 308 1 853 187 0 145 chr15 53610401 53610643 -47769878 - L1PB1 LINE L1 -2494 3652 3469 592 197 15 36 chr15 53610650 53610787 -47769734 - MLT1B LTR MaLR -240 134 1 203 333 44 11 chr15 53611192 53611282 -47769239 + L3 LINE CR1 1251 1343 -234 216 0 0 0 chr15 53611910 53611934 -47768587 + (T)n Simple_repeat Simple_repeat 1 24 0 974 156 0 6 chr15 53612385 53612564 -47767957 + CT-rich Low_complexity Low_complexity 3 180 0 503 228 18 12 chr15 53612526 53612697 -47767824 + C-rich Low_complexity Low_complexity 5 176 0 * 1462 201 24 41 chr15 53612709 53613003 -47767518 - AluJo SINE Alu -23 289 1 24 0 0 0 chr15 53613003 53613027 -47767494 + AT_rich Low_complexity Low_complexity 1 24 0 1892 156 7 7 chr15 53613027 53613316 -47767205 + AluJb SINE Alu 1 289 -23 2212 103 3 7 chr15 53613316 53613616 -47766905 - AluSq SINE Alu -14 299 1 380 287 108 30 chr15 53615414 53615581 -47764940 - MIR SINE MIR -30 232 53 425 263 25 69 chr15 53615782 53615942 -47764579 - MER5B DNA MER1_type -25 153 1 773 195 84 20 chr15 53616866 53617117 -47763404 - L1MEc LINE L1 -1576 4639 4373 347 313 38 0 chr15 53617118 53617249 -47763272 - L1MEc LINE L1 -2775 3440 3305 2386 291 78 30 chr15 53617251 53617638 -47762883 - L1MEc LINE L1 -4579 1817 1450 1357 236 37 55 chr15 53617638 53618041 -47762480 + MSTD LTR MaLR 1 396 0 2386 291 78 30 chr15 53618041 53618741 -47761780 - L1MEc LINE L1 -4946 1450 785 2038 147 10 0 chr15 53618741 53619040 -47761481 - AluSx SINE Alu -10 302 1 2386 291 78 30 chr15 53619040 53619655 -47760866 - L1MEc LINE L1 -5611 785 32 992 123 0 0 chr15 53620064 53620202 -47760319 - FRAM SINE Alu -12 164 27 21 57 0 0 chr15 53621272 53621307 -47759214 + AT_rich Low_complexity Low_complexity 1 35 0 323 358 75 0 chr15 53621577 53621711 -47758810 - L2 LINE L2 -7 3265 3122 7945 232 72 59 chr15 53621992 53622162 -47758359 - L1ME1 LINE L1 -92 6143 5977 2213 105 0 7 chr15 53622162 53622466 -47758055 - AluSx SINE Alu -8 304 3 7945 232 72 59 chr15 53622466 53622688 -47757833 - L1ME1 LINE L1 -258 5977 5759 2312 110 3 0 chr15 53622688 53622998 -47757523 - AluSp SINE Alu -2 311 1 7945 232 72 59 chr15 53622998 53623603 -47756918 - L1ME1 LINE L1 -476 5759 5163 1641 167 28 21 chr15 53623603 53623890 -47756631 - AluJb SINE Alu -23 289 1 7945 232 72 59 chr15 53623890 53626208 -47754313 - L1ME1 LINE L1 -1072 5163 2876 6679 62 24 1 chr15 53626208 53627507 -47753014 + L1PA6 LINE L1 4837 6154 0 7945 232 72 59 chr15 53627507 53628847 -47751674 - L1ME1 LINE L1 -3359 2876 1554 1214 218 156 34 chr15 53628847 53629200 -47751321 + MSTD LTR MaLR 1 396 0 7945 232 72 59 chr15 53629200 53630405 -47750116 - L1ME1 LINE L1 -4681 1554 37 661 206 97 7 chr15 53630410 53630565 -47749956 - MER3 DNA MER1_type -85 124 3 186 43 0 0 chr15 53630599 53630622 -47749899 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 333 0 0 0 chr15 53630621 53630658 -47749863 + (TG)n Simple_repeat Simple_repeat 1 37 0 726 146 0 66 chr15 53630675 53630812 -47749709 + FLAM_C SINE Alu 4 131 -2 320 207 61 37 chr15 53631055 53631137 -47749384 + L2 LINE L2 3218 3301 -12 479 79 53 0 chr15 53631914 53631990 -47748531 + MADE1 DNA Mariner 1 80 0 2183 127 0 0 chr15 53632373 53632672 -47747849 - AluSx SINE Alu -13 299 1 2180 80 49 0 chr15 53632800 53633088 -47747433 + AluSq SINE Alu 1 302 -11 468 188 59 155 chr15 53633576 53633803 -47746718 - MER112 DNA MER1_type -13 247 49 2402 27 41 10 chr15 53633803 53634098 -47746423 + AluY SINE Alu 1 304 -7 468 188 59 155 chr15 53634098 53634141 -47746380 - MER112 DNA MER1_type -211 49 3 270 265 12 36 chr15 53634581 53634664 -47745857 + MIR3 SINE MIR 99 179 -29 198 0 0 0 chr15 53634970 53634992 -47745529 + (T)n Simple_repeat Simple_repeat 1 22 0 638 265 88 0 chr15 53636917 53637098 -47743423 - MER105 DNA DNA -4 200 4 279 62 125 0 chr15 53638156 53638204 -47742317 + MADE1 DNA Mariner 1 54 -26 442 19 0 0 chr15 53638279 53638332 -47742189 + MADE1 DNA Mariner 28 80 0 2049 110 4 0 chr15 53638783 53639064 -47741457 + AluSx SINE Alu 1 282 -30 1992 121 0 4 chr15 53639892 53640198 -47740323 - AluSx SINE Alu 0 307 3 753 199 115 0 chr15 53640308 53640464 -47740057 - FAM SINE Alu -1 174 1 547 236 341 56 chr15 53640553 53640617 -47739904 - L2 LINE L2 -531 2783 2738 4143 73 42 2 chr15 53640617 53640804 -47739717 - MER4A LTR ERV1 -1 599 421 180 0 0 0 chr15 53640804 53640824 -47739697 + (GTTTG)n Simple_repeat Simple_repeat 4 23 0 4143 73 42 2 chr15 53640824 53641212 -47739309 - MER4A LTR ERV1 -179 421 1 547 236 341 56 chr15 53641212 53641479 -47739042 - L2 LINE L2 -576 2738 2548 853 229 0 0 chr15 53641479 53641645 -47738876 - FRAM SINE Alu 0 166 1 547 236 341 56 chr15 53641645 53641883 -47738638 - L2 LINE L2 -766 2548 2050 2402 92 0 0 chr15 53642143 53642446 -47738075 + AluSg SINE Alu 1 303 -7 1739 159 23 17 chr15 53642711 53643012 -47737509 + AluJo SINE Alu 1 303 -9 1877 136 9 28 chr15 53643085 53643402 -47737119 + AluSx SINE Alu 1 311 -1 750 93 0 0 chr15 53643445 53643553 -47736968 - MER4B LTR ERV1 -499 111 4 662 157 71 79 chr15 53643555 53643695 -47736826 - Tigger7 DNA MER2_type -503 202 64 376 232 0 0 chr15 53643699 53643768 -47736753 + Tigger7 DNA MER2_type 2 70 -269 1205 140 14 79 chr15 53643768 53644047 -47736474 + L1MB8 LINE L1 5918 6178 0 3963 220 96 46 chr15 53644118 53646410 -47734111 + L1MC4 LINE L1 5520 8041 -1 327 332 47 47 chr15 53646526 53646737 -47733784 - MIR SINE MIR -32 230 20 197 33 33 0 chr15 53647577 53647607 -47732914 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2075 221 31 91 chr15 53647722 53648165 -47732356 + L1MC5 LINE L1 6692 7065 -896 2097 83 0 24 chr15 53648165 53648453 -47732068 - AluY SINE Alu -2 309 29 2075 221 31 91 chr15 53648453 53648825 -47731696 + L1MC5 LINE L1 7065 7458 -503 904 128 70 13 chr15 53648865 53649021 -47731500 - MER3 DNA MER1_type -86 123 6 538 217 26 9 chr15 53649025 53649140 -47731381 - MLT1B LTR MaLR -3 387 271 1411 174 23 12 chr15 53649195 53649454 -47731067 + AluJo SINE Alu 1 262 -50 228 67 0 0 chr15 53649490 53649520 -47731001 + (TG)n Simple_repeat Simple_repeat 1 30 0 811 245 27 5 chr15 53649751 53649935 -47730586 - MER5A DNA MER1_type -1 188 1 25 31 0 0 chr15 53649938 53649970 -47730551 + AT_rich Low_complexity Low_complexity 1 32 0 369 109 178 59 chr15 53650840 53650941 -47729580 + MER3 DNA MER1_type 96 208 -1 22 0 0 0 chr15 53651321 53651343 -47729178 + AT_rich Low_complexity Low_complexity 1 22 0 761 178 29 58 chr15 53652021 53652195 -47728326 + AluJo SINE Alu 1 169 -143 912 225 83 77 chr15 53652212 53652537 -47727984 + MLT1A1 LTR MaLR 39 365 0 910 240 47 78 chr15 53653120 53653529 -47726992 - MSTD LTR MaLR 0 396 1 2189 151 91 7 chr15 53653537 53653942 -47726579 - Tigger2 DNA MER2_type 0 2718 2280 412 131 33 0 chr15 53653950 53654011 -47726510 - Tigger2 DNA MER2_type -2655 63 1 318 292 42 10 chr15 53654049 53654145 -47726376 - L2 LINE L2 0 3272 3174 231 114 0 0 chr15 53655258 53655293 -47725228 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 348 175 175 0 chr15 53655573 53655653 -47724868 - MER46C DNA MER2_type -221 117 24 1813 168 7 10 chr15 53655663 53655973 -47724548 + AluJo SINE Alu 1 309 -3 396 0 0 0 chr15 53656194 53656238 -47724283 + (TG)n Simple_repeat Simple_repeat 2 45 0 2173 72 0 36 chr15 53659053 53659359 -47721162 - AluSq SINE Alu -18 295 1 1564 145 105 34 chr15 53660125 53660449 -47720072 - MER7A DNA MER2_type -1 345 1 244 194 139 69 chr15 53660970 53661114 -47719407 - L1ME4a LINE L1 -61 6060 5907 499 144 21 10 chr15 53661212 53661309 -47719212 + MER58 DNA MER1_type 2322 2419 -1 330 67 0 0 chr15 53662173 53662218 -47718303 + (TG)n Simple_repeat Simple_repeat 1 45 0 1810 177 0 10 chr15 53662730 53663041 -47717480 - AluJb SINE Alu -4 308 1 1394 210 3 53 chr15 53663919 53664238 -47716283 + AluJb SINE Alu 2 304 -8 2803 219 70 86 chr15 53665611 53666943 -47713578 + L1MDb LINE L1 782 2048 -4358 274 293 53 8 chr15 53666969 53667102 -47713419 + L1MDb LINE L1 2135 2273 -4133 5147 182 29 24 chr15 53667104 53668239 -47712282 - L1PA16 LINE L1 -1363 4783 3643 * 5294 166 36 5 chr15 53668224 53669582 -47710939 + L1PA16 LINE L1 4766 6159 -7 1579 247 121 52 chr15 53669576 53670122 -47710399 + L1MDb LINE L1 2285 2792 -3614 * 2129 130 0 3 chr15 53670122 53670423 -47710098 + AluSx SINE Alu 3 302 -10 1579 247 121 52 chr15 53670423 53670862 -47709659 + L1MDb LINE L1 2792 3199 -3207 2465 58 0 0 chr15 53670862 53671155 -47709366 + AluY SINE Alu 1 293 -18 1579 247 121 52 chr15 53671155 53671528 -47708993 + L1MDb LINE L1 3199 3736 -2670 1906 146 0 0 chr15 53671537 53671831 -47708690 + AluSx SINE Alu 1 294 -18 549 127 0 0 chr15 53671867 53671946 -47708575 - AluJ/FLAM SINE Alu -233 79 1 746 219 7 7 chr15 53672133 53672284 -47708237 - FRAM SINE Alu -15 151 1 22 35 0 0 chr15 53672294 53672323 -47708198 + AT_rich Low_complexity Low_complexity 1 29 0 971 209 125 6 chr15 53672333 53672644 -47707877 + L1M4 LINE L1 2871 3218 -2928 34 0 0 0 chr15 53672924 53672958 -47707563 + AT_rich Low_complexity Low_complexity 1 34 0 2028 101 7 11 chr15 53672958 53673234 -47707287 - AluSx SINE Alu -11 301 27 323 250 254 11 chr15 53673321 53673601 -47706920 - L1MC4 LINE L1 -197 7845 7498 2693 204 88 3 chr15 53675128 53675730 -47704791 + MER82 DNA MER2_type 1 653 0 221 341 8 16 chr15 53676140 53676171 -47704350 - L3 LINE CR1 -736 841 811 1955 120 3 58 chr15 53676171 53676350 -47704171 - AluSq SINE Alu -5 308 154 2335 89 0 3 chr15 53676350 53676654 -47703867 - AluY SINE Alu -8 303 1 1955 120 3 58 chr15 53676654 53676800 -47703721 - AluSq SINE Alu -159 154 1 221 341 8 16 chr15 53676800 53676891 -47703630 - L3 LINE CR1 -766 811 720 288 204 150 18 chr15 53677152 53677265 -47703256 + MER103 DNA DNA 5 132 -34 284 330 20 0 chr15 53677385 53677485 -47703036 - L3 LINE CR1 -225 1352 1251 1839 164 0 10 chr15 53677509 53677813 -47702708 - AluJo SINE Alu -9 303 3 1612 93 0 0 chr15 53678257 53678462 -47702059 - AluSq SINE Alu -20 293 89 571 115 0 0 chr15 53678462 53678540 -47701981 + AluS SINE Alu 7 84 -228 1771 166 7 3 chr15 53678580 53678864 -47701657 + AluSx SINE Alu 1 285 -27 566 225 42 0 chr15 53679468 53679588 -47700933 + MIR3 SINE MIR 61 185 -23 1002 108 0 32 chr15 53679704 53679889 -47700632 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 234 105 0 0 chr15 53679891 53679929 -47700592 + (TC)n Simple_repeat Simple_repeat 1 38 0 1345 168 7 69 chr15 53679929 53680220 -47700301 - AluJo SINE Alu -39 273 1 766 186 145 0 chr15 53680321 53680466 -47700055 - FRAM SINE Alu -12 164 1 1613 189 3 10 chr15 53681055 53681356 -47699165 - AluJb SINE Alu -13 299 1 465 143 0 0 chr15 53682231 53682301 -47698220 + AluJ/FLAM SINE Alu 21 90 -222 25 51 0 0 chr15 53682364 53682403 -47698118 + AT_rich Low_complexity Low_complexity 1 39 0 2116 166 47 10 chr15 53683088 53683497 -47697024 + MSTB LTR MaLR 1 424 -2 687 269 48 0 chr15 53684458 53684625 -47695896 - LTR16A LTR ERVL -5 445 271 281 200 0 0 chr15 53684660 53684705 -47695816 - LTR16A LTR ERVL -265 185 141 347 203 0 29 chr15 53685134 53685203 -47695318 - L2 LINE L2 -1 3312 3246 1837 165 0 33 chr15 53685263 53685566 -47694955 - AluSx SINE Alu -19 293 1 695 216 32 16 chr15 53685707 53685892 -47694629 - Charlie2 DNA MER1_type -64 2798 2611 3058 246 72 32 chr15 53685922 53686809 -47693712 + HERVL40 LTR ERVL 3517 4446 -1084 465 19 0 0 chr15 53686809 53686863 -47693658 + (TTA)n Simple_repeat Simple_repeat 1 54 0 3058 246 72 32 chr15 53686863 53686923 -47693598 + HERVL40 LTR ERVL 4446 4502 -1028 1811 168 7 0 chr15 53686955 53687235 -47693286 + AluSx SINE Alu 3 284 -28 232 183 0 67 chr15 53687495 53687555 -47692966 + LTR40a LTR ERVL 457 512 -7 256 309 33 88 chr15 53687624 53687805 -47692716 + HERVL40 LTR ERVL 2502 2672 -365 519 363 7 29 chr15 53687965 53688378 -47692143 + MER89-int LTR ERV1 6081 6484 -317 * 1219 256 10 3 chr15 53688270 53688616 -47691905 + HERVL40 LTR ERVL 2785 5530 0 2285 214 42 8 chr15 53688616 53689111 -47691410 + LTR40a LTR ERVL 1 512 -7 853 219 42 14 chr15 53689274 53689489 -47691032 + MER58A DNA MER1_type 4 224 0 192 77 0 0 chr15 53689663 53689689 -47690832 + (T)n Simple_repeat Simple_repeat 1 26 0 2265 91 106 53 chr15 53690043 53690399 -47690122 - LTR56 LTR ERV1 0 445 62 1547 170 78 0 chr15 53690399 53690682 -47689839 - AluJb SINE Alu -3 309 5 2265 91 106 53 chr15 53690682 53690742 -47689779 - LTR56 LTR ERV1 -383 62 7 2220 185 56 116 chr15 53691273 53692047 -47688474 - LTR8A LTR ERV1 0 727 1 546 68 0 0 chr15 53693319 53693392 -47687129 + Alu SINE Alu 4 76 -235 1165 179 51 30 chr15 53693635 53693869 -47686652 - MER8 DNA MER2_type 0 239 1 6070 53 1 8 chr15 53693988 53694000 -47686521 - L1PA6 LINE L1 -3 6151 6140 243 0 0 0 chr15 53694000 53694027 -47686494 + (TATG)n Simple_repeat Simple_repeat 2 28 0 6070 53 1 8 chr15 53694027 53694791 -47685730 - L1PA6 LINE L1 -14 6140 5380 333 296 72 8 chr15 53695202 53695327 -47685194 - MIR SINE MIR -13 249 117 25 0 0 0 chr15 53695508 53695533 -47684988 + AT_rich Low_complexity Low_complexity 1 25 0 1927 184 18 6 chr15 53695730 53696056 -47684465 - MER1B DNA MER1_type -9 330 1 1936 145 30 0 chr15 53696164 53696461 -47684060 - AluSx SINE Alu -6 306 1 1880 131 3 20 chr15 53697029 53697327 -47683194 - AluSx SINE Alu -19 293 1 710 298 144 26 chr15 53697703 53698028 -47682493 + L3 LINE CR1 936 1344 -233 792 200 122 34 chr15 53698028 53698233 -47682288 - MER58A DNA MER1_type 0 224 2 710 298 144 26 chr15 53698233 53698414 -47682107 + L3 LINE CR1 1344 1502 -75 1391 211 53 30 chr15 53698702 53699039 -47681482 + MER2 DNA MER2_type 1 345 0 2151 239 114 42 chr15 53699039 53699621 -47680900 - L1ME2 LINE L1 -23 6141 5602 1997 133 42 36 chr15 53699621 53699909 -47680612 + THE1B LTR MaLR 1 293 -71 2045 121 24 13 chr15 53699909 53700207 -47680314 - AluSx SINE Alu -11 301 1 1997 133 42 36 chr15 53700207 53700278 -47680243 + THE1B LTR MaLR 293 362 -2 2151 239 114 42 chr15 53700278 53700748 -47679773 - L1ME2 LINE L1 -562 5602 5167 1837 139 10 7 chr15 53700748 53701042 -47679479 - AluSx SINE Alu -14 298 4 2151 239 114 42 chr15 53701042 53701427 -47679094 - L1ME2 LINE L1 -997 5167 4583 1653 230 49 37 chr15 53701539 53702074 -47678447 - L1ME1 LINE L1 -18 6148 5608 210 143 0 0 chr15 53702091 53702126 -47678395 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 195 129 0 0 chr15 53702168 53702199 -47678322 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1316 181 69 43 chr15 53702201 53702478 -47678043 - AluJo SINE Alu -28 284 1 23 0 0 0 chr15 53702478 53702501 -47678020 + AT_rich Low_complexity Low_complexity 1 23 0 1176 222 72 71 chr15 53704215 53704387 -47676134 + L1MDb LINE L1 782 952 -5454 1692 145 0 56 chr15 53704387 53704691 -47675830 - AluJb SINE Alu -25 287 1 1176 222 72 71 chr15 53704691 53705263 -47675258 + L1MDb LINE L1 952 1456 -4950 21 0 0 0 chr15 53705290 53705311 -47675210 + AT_rich Low_complexity Low_complexity 1 21 0 320 340 60 32 chr15 53706598 53706783 -47673738 - MIR SINE MIR -71 191 2 331 279 95 51 chr15 53707010 53707168 -47673353 - MIR SINE MIR -46 216 52 1818 159 3 17 chr15 53707218 53707514 -47673007 - AluJo SINE Alu -20 292 1 1358 168 171 17 chr15 53707747 53708039 -47672482 + MER1B DNA MER1_type 1 337 0 1769 169 81 35 chr15 53708299 53708745 -47671776 - L1M4 LINE L1 -523 5661 5184 1906 104 31 4 chr15 53709116 53709375 -47671146 + AluSx SINE Alu 4 269 -43 246 32 0 0 chr15 53709376 53709407 -47671114 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 1479 171 62 4 chr15 53710107 53710382 -47670139 + AluJo SINE Alu 4 294 -18 219 69 0 0 chr15 53710401 53710430 -47670091 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 21 0 0 0 chr15 53713966 53713987 -47666534 + AT_rich Low_complexity Low_complexity 1 21 0 647 78 10 29 chr15 53714054 53714157 -47666364 - AluSp/q SINE Alu -3 310 210 1526 203 4 4 chr15 53714380 53714661 -47665860 - AluJo SINE Alu -31 281 1 3586 161 44 87 chr15 53714709 53715570 -47664951 - L1MB1 LINE L1 0 6168 5345 216 0 0 0 chr15 53716145 53716169 -47664352 + (A)n Simple_repeat Simple_repeat 1 24 0 798 172 0 0 chr15 53767006 53767134 -47613387 - FLAM_C SINE Alu -3 130 3 239 343 0 0 chr15 53767135 53767205 -47613316 - MER5A DNA MER1_type -113 76 7 2651 237 59 52 chr15 53768352 53768768 -47611753 + L1M4 LINE L1 2403 2814 -3332 1104 186 14 0 chr15 53768768 53768988 -47611533 + L1PA14 LINE L1 5939 6161 0 2651 237 59 52 chr15 53768988 53769018 -47611503 + L1M4 LINE L1 2814 2842 -3304 1457 148 89 44 chr15 53769018 53769288 -47611233 + AluJo SINE Alu 6 287 -25 2651 237 59 52 chr15 53769288 53769889 -47610632 + L1M4 LINE L1 2842 3459 -2687 1175 121 6 0 chr15 53769900 53770074 -47610447 - AluSg/x SINE Alu -10 302 128 438 337 29 12 chr15 53771231 53771403 -47609118 + MIR SINE MIR 75 249 -13 949 188 83 0 chr15 53774133 53774325 -47606196 + MER3 DNA MER1_type 2 209 0 200 148 0 66 chr15 53775065 53775098 -47605423 + (TTAA)n Simple_repeat Simple_repeat 4 33 -27 1285 31 0 6 chr15 53775098 53775258 -47605263 + L1PA4 LINE L1 5997 6155 0 200 148 0 66 chr15 53775258 53775285 -47605236 + (TTAA)n Simple_repeat Simple_repeat 33 60 0 2379 77 0 37 chr15 53775573 53775896 -47604625 + AluY SINE Alu 1 311 0 252 0 0 0 chr15 53777446 53777474 -47603047 + (A)n Simple_repeat Simple_repeat 1 28 0 355 293 169 26 chr15 53777848 53778069 -47602452 + MIR SINE MIR 10 256 -6 443 152 0 0 chr15 53778426 53778492 -47602029 - AluSq/x SINE Alu -203 109 44 287 241 153 53 chr15 53778493 53778663 -47601858 - L1ME LINE L1 -294 5827 5641 308 203 14 54 chr15 53778787 53778861 -47601660 - AluJo SINE Alu -128 174 104 2215 120 0 0 chr15 53779643 53779942 -47600579 - AluSx SINE Alu -13 299 1 303 274 20 20 chr15 53780217 53780319 -47600202 + MER58 DNA MER1_type 2318 2419 -1 218 286 36 0 chr15 53780627 53780683 -47599838 + (CGTG)n Simple_repeat Simple_repeat 2 59 0 1743 171 9 22 chr15 53780748 53781063 -47599458 + AluJo SINE Alu 1 311 -1 23 0 0 0 chr15 53781405 53781428 -47599093 + AT_rich Low_complexity Low_complexity 1 23 0 769 180 0 0 chr15 53781706 53781834 -47598687 + FLAM_C SINE Alu 12 139 -4 47 53 0 0 chr15 53782752 53782827 -47597694 + AT_rich Low_complexity Low_complexity 1 75 0 548 277 14 7 chr15 53783398 53783546 -47596975 + MLT1K LTR MaLR 434 582 -6 1999 122 0 80 chr15 53784045 53784382 -47596139 - AluSx SINE Alu -2 310 1 1634 156 52 3 chr15 53784704 53784992 -47595529 - AluJb SINE Alu -4 308 7 1688 143 85 37 chr15 53785463 53785791 -47594730 - MER2 DNA MER2_type 0 344 1 408 340 0 21 chr15 53786209 53786350 -47594171 + MIR3 SINE MIR 5 142 -66 1334 184 121 18 chr15 53788068 53788340 -47592181 + AluJo SINE Alu 1 300 -12 401 80 0 0 chr15 53790876 53790926 -47589595 - AluJ/FLAM SINE Alu -251 61 12 180 0 0 0 chr15 53790960 53790980 -47589541 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 270 233 50 0 chr15 53790984 53791044 -47589477 - L2 LINE L2 -230 3083 3021 640 169 153 0 chr15 53791056 53791180 -47589341 + FRAM SINE Alu 18 160 -16 1523 169 43 22 chr15 53791353 53791631 -47588890 + AluJb SINE Alu 1 284 -28 1946 221 82 126 chr15 53792732 53793627 -47586894 + L1MEc LINE L1 130 1062 -5334 624 27 0 0 chr15 53793627 53793701 -47586820 + (TTCC)n Simple_repeat Simple_repeat 1 74 0 1946 221 82 126 chr15 53793701 53793734 -47586787 + L1MEc LINE L1 1062 1095 -5301 1493 197 17 20 chr15 53793734 53794034 -47586487 - AluJo SINE Alu -13 299 1 1946 221 82 126 chr15 53794034 53794187 -47586334 + L1MEc LINE L1 1095 1165 -5231 2159 94 7 27 chr15 53794238 53794536 -47585985 + AluSc SINE Alu 1 292 -17 1598 250 131 52 chr15 53794579 53795988 -47584533 + L1MCc LINE L1 853 2149 -4973 1168 193 52 0 chr15 53795988 53796201 -47584320 - MER58A DNA MER1_type 0 224 1 1598 250 131 52 chr15 53796201 53796498 -47584023 + L1MCc LINE L1 2149 2421 -4701 1378 168 118 11 chr15 53796498 53796778 -47583743 + AluJo SINE Alu 1 310 -2 1598 250 131 52 chr15 53796778 53796868 -47583653 + L1MCc LINE L1 2421 2976 -4146 692 264 145 4 chr15 53797671 53797898 -47582623 - MIR SINE MIR 0 262 4 222 156 0 0 chr15 53797937 53797982 -47582539 + CT-rich Low_complexity Low_complexity 4 48 0 1436 155 68 22 chr15 53798265 53798543 -47581978 + AluJo SINE Alu 1 291 -11 369 255 43 106 chr15 53799037 53799198 -47581323 - MIR3 SINE MIR -33 175 25 2165 125 0 10 chr15 53800303 53800615 -47579906 - AluSx SINE Alu -3 309 1 1795 157 37 3 chr15 53800937 53801231 -47579290 - AluJb SINE Alu -8 304 1 2555 92 31 3 chr15 53802894 53803254 -47577267 - THE1C LTR MaLR -5 370 1 1803 162 26 16 chr15 53803433 53803742 -47576779 - AluJo SINE Alu 0 312 1 869 198 63 38 chr15 53804352 53804589 -47575932 + Charlie4 DNA MER1_type 3 245 -1716 2248 107 0 0 chr15 53805650 53805948 -47574573 + AluSg SINE Alu 5 302 -8 1535 197 14 24 chr15 53806177 53806467 -47574054 + AluJo SINE Alu 8 294 -18 1076 173 10 43 chr15 53806663 53806871 -47573650 - LTR48B LTR ERV1 -441 203 3 2823 77 11 11 chr15 53807027 53807402 -47573119 - THE1C LTR MaLR 0 375 1 2160 121 3 0 chr15 53807424 53807729 -47572792 - AluSx SINE Alu -2 310 5 269 256 184 56 chr15 53807742 53807879 -47572642 + L1ME LINE L1 5521 5639 -482 294 73 0 0 chr15 53807879 53807920 -47572601 + (TG)n Simple_repeat Simple_repeat 2 42 0 269 256 184 56 chr15 53807920 53808048 -47572473 + L1ME LINE L1 5639 5820 -301 2244 101 0 0 chr15 53808292 53808588 -47571933 - AluY SINE Alu -15 296 1 1094 175 57 0 chr15 53808775 53808969 -47571552 - AluJo SINE Alu -107 205 1 1880 177 7 0 chr15 53810031 53810330 -47570191 + AluJo SINE Alu 1 301 -11 218 152 0 22 chr15 53810330 53810376 -47570145 + GA-rich Low_complexity Low_complexity 1 45 0 461 203 42 157 chr15 53810668 53810783 -47569738 - MER63A DNA MER1_type -1478 210 134 646 256 0 0 chr15 53810783 53810916 -47569605 + FLAM_A SINE Alu 1 133 0 461 203 42 157 chr15 53810916 53811036 -47569485 - MER63A DNA MER1_type -1554 134 2 2173 94 0 11 chr15 53811513 53811822 -47568699 + AluSx SINE Alu 1 306 0 183 296 0 19 chr15 53812094 53812148 -47568373 + L2 LINE L2 3210 3262 -10 * 228 286 26 13 chr15 53812143 53812220 -47568301 + MIR3 SINE MIR 12 89 -119 24 0 0 0 chr15 53812301 53812325 -47568196 + AT_rich Low_complexity Low_complexity 1 24 0 255 158 237 26 chr15 53812336 53812412 -47568109 + Charlie1 DNA MER1_type 2670 2761 0 232 295 246 6 chr15 53812748 53812924 -47567597 - MIR SINE MIR -8 254 38 504 116 186 0 chr15 53813027 53813113 -47567408 - AluJb SINE Alu -16 296 195 224 171 0 0 chr15 53813123 53813158 -47567363 + MIR SINE MIR 37 71 -137 325 73 0 0 chr15 53813301 53813342 -47567179 - Alu SINE Alu -267 41 1 518 282 5 35 chr15 53813344 53813554 -47566967 + L1M4 LINE L1 3465 3665 -2481 1799 259 71 8 chr15 53813557 53814201 -47566320 + L1M4 LINE L1 3796 4480 -1666 287 134 0 104 chr15 53814245 53814312 -47566209 + FLAM SINE Alu 75 117 -16 417 214 16 40 chr15 53814316 53814442 -47566079 + L1M4 LINE L1 5158 5280 -866 1296 171 8 61 chr15 53814443 53814707 -47565814 + AluJo SINE Alu 44 293 -19 248 278 62 72 chr15 53814942 53815039 -47565482 + L3 LINE CR1 965 1060 -517 375 341 37 47 chr15 53815096 53815392 -47565129 + L3 LINE CR1 1252 1544 -33 1008 167 6 0 chr15 53815392 53815548 -47564973 + FRAM SINE Alu 4 160 -16 215 371 10 10 chr15 53815586 53815683 -47564838 - L2 LINE L2 -2030 1284 1188 383 304 0 0 chr15 53815909 53816001 -47564520 - MIR SINE MIR -105 157 66 217 218 0 55 chr15 53816391 53816446 -47564075 + L2 LINE L2 3213 3264 -8 2152 125 0 3 chr15 53816602 53816905 -47563616 - AluSq SINE Alu -9 304 3 270 0 0 0 chr15 53816945 53816975 -47563546 + (GA)n Simple_repeat Simple_repeat 2 31 0 1117 158 62 10 chr15 53817019 53817262 -47563259 - AluJb SINE Alu 0 312 86 309 209 12 23 chr15 53817552 53817638 -47562883 + L1MC5 LINE L1 7832 7916 -45 1753 109 3 136 chr15 53818544 53818874 -47561647 + AluSg SINE Alu 3 288 -22 2592 55 0 0 chr15 53820143 53820450 -47560071 - AluY SINE Alu -4 307 1 593 225 62 0 chr15 53820595 53820724 -47559797 - FLAM_A SINE Alu -4 138 2 21 36 0 0 chr15 53821631 53821659 -47558862 + AT_rich Low_complexity Low_complexity 1 28 0 375 215 47 9 chr15 53822476 53822583 -47557938 - L1MC4 LINE L1 0 8042 7932 260 313 239 17 chr15 53823047 53823223 -47557298 - MIR SINE MIR -28 234 20 650 189 24 65 chr15 53823494 53823663 -47556858 - MER58A DNA MER1_type -18 206 45 22 0 0 0 chr15 53824398 53824420 -47556101 + AT_rich Low_complexity Low_complexity 1 22 0 7684 199 46 47 chr15 53824663 53824951 -47555570 + L1MB5 LINE L1 2936 3223 -2951 1651 181 20 3 chr15 53824951 53825244 -47555277 + AluJb SINE Alu 11 308 -4 7684 199 46 47 chr15 53825244 53825553 -47554968 + L1MB5 LINE L1 3223 3531 -2643 1704 189 7 0 chr15 53825553 53825849 -47554672 + AluJb SINE Alu 1 298 -14 7684 199 46 47 chr15 53825849 53826235 -47554286 + L1MB5 LINE L1 3531 3916 -2258 1819 158 21 0 chr15 53826235 53826526 -47553995 + AluSx SINE Alu 1 297 -15 7684 199 46 47 chr15 53826526 53826747 -47553774 + L1MB5 LINE L1 3916 4136 -2038 1446 121 31 0 chr15 53826747 53826970 -47553551 + MER30 DNA MER1_type 1 230 0 7684 199 46 47 chr15 53826970 53826986 -47553535 + L1MB5 LINE L1 4136 4151 -2023 2163 111 0 26 chr15 53826986 53827292 -47553229 + AluSg SINE Alu 1 298 -12 7684 199 46 47 chr15 53827292 53828139 -47552382 + L1MB5 LINE L1 4151 4997 -1177 1706 175 7 7 chr15 53828139 53828425 -47552096 - AluJo SINE Alu -26 286 1 7684 199 46 47 chr15 53828425 53829598 -47550923 + L1MB5 LINE L1 4997 6174 0 292 300 117 8 chr15 53829977 53830097 -47550424 + L3 LINE CR1 348 480 -1097 511 266 16 33 chr15 53830174 53830358 -47550163 + L3 LINE CR1 712 892 -685 1642 204 10 3 chr15 53830518 53830826 -47549695 + AluJo SINE Alu 1 310 -2 294 301 150 9 chr15 53830853 53830966 -47549555 + L3 LINE CR1 1447 1575 -2 2184 114 13 0 chr15 53830992 53831290 -47549231 + AluSx SINE Alu 1 302 -10 247 113 38 0 chr15 53833777 53833830 -47546691 + (TA)n Simple_repeat Simple_repeat 1 55 0 300 125 25 100 chr15 53833833 53833913 -47546608 + L1MCa LINE L1 1995 2068 -4358 328 305 21 0 chr15 53833931 53834026 -47546495 + L1MC4 LINE L1 6607 6703 -1339 1649 181 0 17 chr15 53834036 53834334 -47546187 - AluJb SINE Alu -19 293 1 1289 179 84 34 chr15 53834336 53834633 -47545888 - AluJb SINE Alu 0 312 1 189 143 0 29 chr15 53835989 53836024 -47544497 + L2 LINE L2 3231 3264 -8 519 206 37 136 chr15 53836101 53836344 -47544177 - MIR SINE MIR -40 222 4 279 79 0 0 chr15 53838006 53838044 -47542477 + (TG)n Simple_repeat Simple_repeat 2 39 0 354 361 81 47 chr15 53839546 53839867 -47540654 - L2 LINE L2 -2 3270 2939 2110 101 7 0 chr15 53839945 53840232 -47540289 + AluSp SINE Alu 18 306 -7 1122 101 63 13 chr15 53840232 53840390 -47540131 + AluSg/x SINE Alu 134 299 -13 348 305 79 45 chr15 53841045 53841222 -47539299 - L2 LINE L2 -23 3290 3108 1063 146 13 0 chr15 53841457 53841615 -47538906 + AluJo SINE Alu 1 160 -152 1926 155 3 0 chr15 53841844 53842135 -47538386 + AluSx SINE Alu 5 296 -16 1579 161 82 4 chr15 53842537 53842804 -47537717 + AluSx SINE Alu 2 289 -23 452 293 78 10 chr15 53843011 53843216 -47537305 - MARNA DNA Mariner -201 385 167 1787 182 0 0 chr15 53844017 53844303 -47536218 - AluJo SINE Alu -21 291 6 2074 118 0 13 chr15 53844589 53844893 -47535628 - AluSx SINE Alu -12 300 1 414 327 6 6 chr15 53847271 53847439 -47533082 + (CCA)n Simple_repeat Simple_repeat 1 168 0 383 271 122 0 chr15 53848265 53848372 -47532149 - MLT1L LTR MaLR -346 269 150 267 236 87 42 chr15 53850378 53850574 -47529947 + L1M1 LINE L1 5576 5785 -377 2052 153 0 0 chr15 53850576 53850877 -47529644 + AluSx SINE Alu 1 301 -11 1221 114 17 0 chr15 53850877 53851053 -47529468 + AluSg/x SINE Alu 134 312 0 21 57 0 0 chr15 53851288 53851323 -47529198 + AT_rich Low_complexity Low_complexity 1 35 0 198 0 0 0 chr15 53853057 53853079 -47527442 + (T)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr15 53853967 53853989 -47526532 + (T)n Simple_repeat Simple_repeat 1 22 0 1786 148 24 14 chr15 53855630 53855927 -47524594 + AluJo SINE Alu 11 310 -2 2301 102 0 0 chr15 53856520 53856823 -47523698 - AluSg SINE Alu -7 303 1 189 0 0 0 chr15 53857585 53857606 -47522915 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 1093 190 0 0 chr15 53857990 53858169 -47522352 - MER58A DNA MER1_type -1 223 45 1607 163 17 30 chr15 53858418 53858718 -47521803 + AluJo SINE Alu 1 296 -16 216 0 0 0 chr15 53858721 53858745 -47521776 + (TA)n Simple_repeat Simple_repeat 1 24 0 1455 177 75 11 chr15 53859069 53859334 -47521187 + AluJo SINE Alu 11 292 -20 27 0 0 0 chr15 53860116 53860143 -47520378 + AT_rich Low_complexity Low_complexity 1 27 0 307 154 0 0 chr15 53861485 53861537 -47518984 + Alu SINE Alu 247 298 -4 292 333 183 0 chr15 53863400 53863553 -47516968 + MER5A DNA MER1_type 9 189 0 334 309 35 82 chr15 53863954 53864166 -47516355 - MIR SINE MIR -44 164 2 1645 203 0 10 chr15 53864519 53864824 -47515697 + AluJb SINE Alu 2 303 -9 341 191 0 3 chr15 53865341 53865415 -47515106 + MER34C LTR ERV1 1 101 -469 371 254 52 10 chr15 53865616 53865782 -47514739 + MER34B LTR ERV1 337 492 -73 610 201 141 37 chr15 53866021 53866267 -47514254 - L1MC4 LINE L1 -116 7879 7660 1200 132 44 18 chr15 53866267 53866495 -47514026 - L1MA3 LINE L1 -14 6291 6058 610 201 141 37 chr15 53866495 53866998 -47513523 - L1MC4 LINE L1 -335 7660 6871 641 256 85 16 chr15 53866999 53867084 -47513437 - L1MD3 LINE L1 -1294 6701 6623 279 0 0 0 chr15 53867084 53867115 -47513406 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 641 256 85 16 chr15 53867115 53867275 -47513246 - L1MD3 LINE L1 -1372 6623 6439 2173 99 3 0 chr15 53867773 53868055 -47512466 + AluSp SINE Alu 3 285 -28 389 346 160 19 chr15 53868143 53868519 -47512002 + L3 LINE CR1 1063 1491 -86 283 310 150 9 chr15 53868573 53868786 -47511735 + MIR SINE MIR 6 248 -14 398 308 9 0 chr15 53868861 53868968 -47511553 + L2 LINE L2 3201 3308 -5 2211 144 20 38 chr15 53869034 53869431 -47511090 - L1MB2 LINE L1 -210 5961 5572 265 260 29 39 chr15 53869484 53869588 -47510933 + L1ME4a LINE L1 5984 6086 -35 2260 109 0 7 chr15 53871369 53871673 -47508848 - AluSg SINE Alu -8 302 1 2328 74 0 10 chr15 53872138 53872434 -47508087 + AluY SINE Alu 1 293 -18 983 234 102 0 chr15 53872479 53872735 -47507786 + AluJb SINE Alu 13 294 -18 861 208 6 0 chr15 53877253 53877412 -47503109 - FRAM SINE Alu -6 160 1 189 388 39 0 chr15 53877546 53877649 -47502872 + MIR SINE MIR 38 144 -64 593 297 59 42 chr15 53878427 53878663 -47501858 + MIR SINE MIR 1 240 -22 24 0 0 0 chr15 53878676 53878700 -47501821 + AT_rich Low_complexity Low_complexity 1 24 0 264 283 26 97 chr15 53879531 53879644 -47500877 + MIR SINE MIR 45 149 -59 220 350 49 28 chr15 53879658 53879801 -47500720 - MIR SINE MIR -6 256 111 4093 155 51 25 chr15 53879802 53879861 -47500660 + L1MB7 LINE L1 5346 5402 -782 1603 173 36 7 chr15 53879861 53880138 -47500383 - AluJb SINE Alu -27 285 1 4093 155 51 25 chr15 53880138 53880895 -47499626 + L1MB7 LINE L1 5402 6184 0 208 372 0 0 chr15 53882028 53882106 -47498415 + L2 LINE L2 3236 3313 0 2049 142 3 10 chr15 53882133 53882444 -47498077 + AluSx SINE Alu 1 309 -3 1678 172 7 40 chr15 53883289 53883591 -47496930 - AluSx SINE Alu -18 294 3 2221 80 30 13 chr15 53884570 53884869 -47495652 + AluY SINE Alu 1 304 -7 270 288 126 35 chr15 53885376 53885429 -47495092 + MER113 DNA MER1_type? 262 309 -212 1246 174 119 82 chr15 53885429 53885559 -47494962 + AluJb SINE Alu 3 127 -185 2206 61 3 61 chr15 53885559 53885872 -47494649 - AluY SINE Alu -16 295 1 1246 174 119 82 chr15 53885872 53886034 -47494487 + AluJb SINE Alu 127 306 -6 270 288 126 35 chr15 53886034 53886178 -47494343 + MER113 DNA MER1_type? 309 477 -44 310 300 163 56 chr15 53886913 53887146 -47493375 + MIR SINE MIR 3 260 -2 646 269 54 88 chr15 53887732 53888175 -47492346 - MLT1A1 LTR MaLR 0 365 1 802 218 13 0 chr15 53888536 53888692 -47491829 - AluJb SINE Alu -3 309 152 186 394 11 43 chr15 53888916 53889010 -47491511 - L2 LINE L2 -67 3205 3115 320 341 118 53 chr15 53889095 53889341 -47491180 - L2 LINE L2 -9 3263 3002 212 405 17 9 chr15 53889320 53889436 -47491085 + L2 LINE L2 3151 3267 -5 * 1477 180 6 68 chr15 53890091 53890235 -47490286 + AluSx SINE Alu 3 118 -194 261 75 0 0 chr15 53890235 53890275 -47490246 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 1477 180 6 68 chr15 53890275 53890452 -47490069 + AluSx SINE Alu 118 304 -8 342 284 65 32 chr15 53891855 53892010 -47488511 - MIR SINE MIR -20 242 83 747 190 87 49 chr15 53892209 53892393 -47488128 + AluJo SINE Alu 1 191 -121 1707 153 33 4 chr15 53892896 53893194 -47487327 + AluJb SINE Alu 2 307 0 425 324 97 5 chr15 53893327 53893543 -47486978 + MIR SINE MIR 2 237 -25 21 0 0 0 chr15 53893843 53893864 -47486657 + AT_rich Low_complexity Low_complexity 1 21 0 226 293 13 53 chr15 53894662 53894737 -47485784 - L2 LINE L2 0 3272 3201 1584 192 0 24 chr15 53894948 53895239 -47485282 + AluJo SINE Alu 5 288 -24 1611 165 0 54 chr15 53895569 53895885 -47484636 - AluJo SINE Alu -13 299 1 183 184 0 0 chr15 53895980 53896018 -47484503 + A-rich Low_complexity Low_complexity 1 38 0 257 338 46 53 chr15 53896031 53896182 -47484339 - L2 LINE L2 -7 3265 3116 263 271 0 43 chr15 53896772 53896842 -47483679 + L2 LINE L2 3186 3252 -20 1890 176 0 3 chr15 53897649 53897961 -47482560 + AluJb SINE Alu 1 311 -1 1502 168 9 75 chr15 53901617 53901938 -47478583 - AluJo SINE Alu -12 300 1 4793 163 35 28 chr15 53901939 53902931 -47477590 - L1MC1 LINE L1 -155 6178 5186 1382 159 31 0 chr15 53903110 53903368 -47477153 - L1MD3 LINE L1 0 7995 7730 312 256 112 24 chr15 53903401 53903526 -47476995 - L1MC4a LINE L1 -1910 5898 5763 227 292 180 0 chr15 53903700 53903789 -47476732 - MIR SINE MIR -74 188 84 1904 138 10 14 chr15 53903830 53904119 -47476402 + AluSx SINE Alu 1 288 -24 2096 128 3 16 chr15 53904368 53904681 -47475840 + AluSx SINE Alu 1 309 -3 2054 134 20 0 chr15 53904807 53905113 -47475408 + AluSx SINE Alu 1 312 0 25 0 0 0 chr15 53905737 53905762 -47474759 + AT_rich Low_complexity Low_complexity 1 25 0 315 0 0 0 chr15 53905905 53905940 -47474581 + (A)n Simple_repeat Simple_repeat 1 35 0 302 80 20 0 chr15 53907286 53907336 -47473185 + (CA)n Simple_repeat Simple_repeat 1 51 0 2443 68 0 16 chr15 53908673 53908982 -47471539 + AluSx SINE Alu 1 304 -8 234 125 0 0 chr15 53911409 53911449 -47469072 + MADE1 DNA Mariner 41 80 0 23 0 0 0 chr15 53911979 53912002 -47468519 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 53912116 53912138 -47468383 + AT_rich Low_complexity Low_complexity 1 22 0 420 286 7 21 chr15 53915813 53915953 -47464568 + MIR3 SINE MIR 20 157 -51 1670 167 28 0 chr15 53916121 53916403 -47464118 + AluJo SINE Alu 1 290 -22 431 35 18 0 chr15 53916690 53916747 -47463774 + (TG)n Simple_repeat Simple_repeat 2 59 0 1964 131 0 0 chr15 53916752 53917027 -47463494 - AluSx SINE Alu -37 275 1 744 148 0 70 chr15 53917273 53917415 -47463106 - FLAM_C SINE Alu 0 133 2 1385 277 127 5 chr15 53918467 53919150 -47461371 - L2 LINE L2 -1 3312 2538 1857 157 0 26 chr15 53919683 53919989 -47460532 + AluJo SINE Alu 1 298 -14 2056 135 0 7 chr15 53920013 53920317 -47460204 + AluJb SINE Alu 1 302 -10 2195 103 3 7 chr15 53920366 53920667 -47459854 + AluSg1 SINE Alu 1 300 -9 219 380 43 0 chr15 53920670 53920762 -47459759 + L2 LINE L2 3208 3303 -10 2178 103 0 32 chr15 53921002 53921313 -47459208 - AluSq SINE Alu -12 301 1 22 0 0 0 chr15 53921313 53921335 -47459186 + AT_rich Low_complexity Low_complexity 1 22 0 1419 183 0 56 chr15 53921576 53921860 -47458661 - AluJo SINE Alu -15 297 30 357 139 0 0 chr15 53921954 53922016 -47458505 - AluSg SINE Alu -84 216 169 695 87 19 0 chr15 53922016 53922120 -47458401 + AluSg/x SINE Alu 205 310 0 1217 119 0 0 chr15 53922317 53922477 -47458044 - AluSg SINE Alu -150 160 1 1750 159 37 3 chr15 53923371 53923667 -47456854 - AluJb SINE Alu -6 306 1 1595 163 12 66 chr15 53924221 53924540 -47455981 - AluJo SINE Alu -10 302 1 982 188 133 9 chr15 53924693 53924911 -47455610 - AluJo SINE Alu -21 291 47 323 226 145 54 chr15 53925786 53925965 -47454556 - MIR SINE MIR 0 262 64 2279 102 0 0 chr15 53925965 53926260 -47454261 + AluY SINE Alu 3 297 -14 281 292 155 19 chr15 53926499 53926660 -47453861 + MIR SINE MIR 49 231 -31 259 336 111 63 chr15 53927181 53927514 -47453007 + L2 LINE L2 2872 3220 -52 199 302 0 0 chr15 53927751 53927794 -47452727 - MIR SINE MIR -105 103 61 1521 180 20 16 chr15 53928518 53928823 -47451698 + AluJb SINE Alu 1 306 -6 2344 88 3 7 chr15 53931241 53931549 -47448972 + AluSq SINE Alu 1 307 -6 184 226 0 0 chr15 53931550 53931581 -47448940 - L2 LINE L2 -32 3240 3210 184 200 0 0 chr15 53931556 53931586 -47448935 - MIR SINE MIR -32 230 201 1915 143 33 27 chr15 53932248 53932583 -47447938 + MER2 DNA MER2_type 1 337 -8 367 100 0 0 chr15 53932583 53932633 -47447888 - AluJ/FLAM SINE Alu -229 73 24 1667 154 27 27 chr15 53932684 53932977 -47447544 - AluJo SINE Alu -19 293 1 2290 98 0 0 chr15 53933496 53933791 -47446730 + AluSq SINE Alu 1 295 -18 474 248 177 30 chr15 53933822 53934020 -47446501 + MIR SINE MIR 36 262 0 368 253 55 0 chr15 53934321 53934412 -47446109 + MIR SINE MIR 89 184 -78 465 274 44 0 chr15 53935289 53935424 -47445097 + L1MB5 LINE L1 6001 6141 -33 21 82 0 0 chr15 53935877 53935926 -47444595 + AT_rich Low_complexity Low_complexity 1 49 0 819 132 0 0 chr15 53936011 53936125 -47444396 + AluSq/x SINE Alu 1 114 -198 1300 128 8 34 chr15 54036125 54036250 -47344271 - MLT1B LTR MaLR -161 229 111 2736 109 65 49 chr15 54036250 54036709 -47343812 + MER75 DNA T2_type 1 470 -44 2022 157 0 7 chr15 54036709 54037008 -47343513 + AluSx SINE Alu 1 297 -15 2736 109 65 49 chr15 54037008 54037054 -47343467 + MER75 DNA T2_type 470 514 0 1300 128 8 34 chr15 54037054 54037163 -47343358 - MLT1B LTR MaLR -279 111 1 1868 142 3 31 chr15 54037571 54037896 -47342625 + AluJb SINE Alu 1 317 0 393 291 127 6 chr15 54038646 54038804 -47341717 + MIR SINE MIR 28 204 -58 198 0 0 0 chr15 54039248 54039270 -47341251 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 2341 134 45 38 chr15 54039326 54039389 -47341132 - MSTA LTR MaLR -6 422 361 2342 112 3 0 chr15 54039389 54039694 -47340827 - AluSp SINE Alu -7 306 1 2341 134 45 38 chr15 54039694 54040049 -47340472 - MSTA LTR MaLR -67 361 1 2360 116 3 0 chr15 54040561 54040872 -47339649 + AluSx SINE Alu 1 312 0 283 256 128 0 chr15 54042253 54042331 -47338190 - MIR SINE MIR -61 147 60 230 240 83 31 chr15 54042420 54042516 -47338005 + MER5B DNA MER1_type 74 174 -4 2185 134 0 3 chr15 54042837 54043142 -47337379 + AluSx SINE Alu 1 304 -8 599 167 15 30 chr15 54044241 54044373 -47336148 + MSTC LTR MaLR 299 428 0 328 273 123 26 chr15 54045645 54045799 -47334722 + MIR SINE MIR 79 247 -15 192 69 0 0 chr15 54046023 54046052 -47334469 - L2 LINE L2 -220 3052 3024 2386 84 0 0 chr15 54046143 54046430 -47334091 + AluSg SINE Alu 10 296 -14 722 206 126 60 chr15 54046565 54046914 -47333607 + L1MC5 LINE L1 7560 7931 -30 236 236 36 0 chr15 54046914 54046969 -47333552 + GA-rich Low_complexity Low_complexity 4 60 0 348 310 10 1 chr15 54048328 54048446 -47332075 + MIR SINE MIR 36 152 -65 2433 64 0 0 chr15 54048459 54048741 -47331780 - AluSg SINE Alu -12 298 17 392 267 78 63 chr15 54049073 54049279 -47331242 + L1MC5 LINE L1 7721 7929 -32 1821 152 0 41 chr15 54049282 54049598 -47330923 + AluSx SINE Alu 1 303 -9 463 153 71 0 chr15 54050215 54050300 -47330221 - MLT1H1 LTR MaLR -60 495 405 1699 150 3 39 chr15 54050492 54050799 -47329722 + MER2 DNA MER2_type 1 296 -49 2057 160 59 26 chr15 54052226 54052430 -47328091 - L1MD3 LINE L1 -122 7873 7677 2246 119 7 0 chr15 54052430 54052732 -47327789 - AluSx SINE Alu -8 304 1 2057 160 59 26 chr15 54052732 54052984 -47327537 - L1MD3 LINE L1 -318 7677 7402 374 214 24 0 chr15 54052986 54053070 -47327451 - MLT1F1 LTR MaLR -446 121 36 269 191 0 0 chr15 54053072 54053119 -47327402 - L1MD3 LINE L1 -880 7115 7069 273 336 60 0 chr15 54053123 54053239 -47327282 + MIR SINE MIR 97 219 -43 208 274 0 0 chr15 54053608 54053659 -47326862 + L2 LINE L2 3258 3308 -5 2169 112 3 34 chr15 54053728 54054050 -47326471 - AluSx SINE Alu 0 312 1 332 148 0 0 chr15 54054085 54054139 -47326382 + MIR SINE MIR 76 129 -79 890 222 63 13 chr15 54055532 54055771 -47324750 - ORSL DNA AcHobo -24 251 1 1698 189 49 14 chr15 54056474 54056761 -47323760 - MLT1B LTR MaLR -4 386 82 2375 96 0 6 chr15 54056761 54057075 -47323446 - AluSx SINE Alu 0 312 1 1698 189 49 14 chr15 54057075 54057157 -47323364 - MLT1B LTR MaLR -308 82 4 476 75 0 0 chr15 54057538 54057605 -47322916 - Alu SINE Alu -9 303 237 3717 124 47 17 chr15 54057707 54058342 -47322179 - L1MC1 LINE L1 -393 5940 5287 1433 149 5 9 chr15 54058342 54058563 -47321958 - AluJo SINE Alu -14 298 79 1403 187 13 27 chr15 54058585 54058884 -47321637 + L1MC1 LINE L1 6037 6331 -2 255 109 0 0 chr15 54059645 54059691 -47320830 - L1MC1 LINE L1 0 6333 6288 198 333 56 0 chr15 54059833 54059905 -47320616 - MIR SINE MIR -76 186 111 1857 192 6 22 chr15 54060319 54060525 -47319996 + MLT1A1 LTR MaLR 1 200 -165 1922 137 17 17 chr15 54060525 54060662 -47319859 + AluJo SINE Alu 1 137 -175 2130 144 0 0 chr15 54060662 54060954 -47319567 + AluSx SINE Alu 1 292 -20 1922 137 17 17 chr15 54060954 54061135 -47319386 + AluJo SINE Alu 136 312 0 1857 192 6 22 chr15 54061135 54061292 -47319229 + MLT1A1 LTR MaLR 200 358 -7 272 104 60 15 chr15 54061332 54061399 -47319122 + GA-rich Low_complexity Low_complexity 2 71 0 586 219 0 12 chr15 54062693 54062857 -47317664 + (CA)n Simple_repeat Simple_repeat 1 162 0 213 184 20 41 chr15 54063033 54063082 -47317439 + GA-rich Low_complexity Low_complexity 4 51 0 2030 168 0 19 chr15 54063691 54064007 -47316514 + AluJb SINE Alu 1 310 -2 374 218 91 36 chr15 54064502 54064612 -47315909 + MIR3 SINE MIR 72 187 -21 275 290 43 0 chr15 54065326 54065419 -47315102 - L2 LINE L2 -557 2757 2661 193 384 110 0 chr15 54065519 54065782 -47314739 - L2 LINE L2 -650 2664 2373 225 193 26 44 chr15 54066447 54066561 -47313960 + GA-rich Low_complexity Low_complexity 1 112 0 366 241 0 97 chr15 54066678 54066873 -47313648 + C-rich Low_complexity Low_complexity 3 178 0 245 231 10 118 chr15 54066898 54067093 -47313428 + C-rich Low_complexity Low_complexity 2 175 0 * 370 221 0 47 chr15 54066965 54067114 -47313407 + CT-rich Low_complexity Low_complexity 3 144 0 336 306 11 71 chr15 54067369 54067547 -47312974 - L1MC4a LINE L1 -1821 5987 5820 1877 175 3 3 chr15 54067547 54067850 -47312671 - AluJb SINE Alu -9 303 1 1135 185 106 83 chr15 54068241 54068674 -47311847 - LTR7 LTR ERV1 -7 443 1 2317 100 3 3 chr15 54069217 54069527 -47310994 + AluSg SINE Alu 1 310 0 190 278 37 0 chr15 54071152 54071206 -47309315 + MIR SINE MIR 109 164 -98 245 264 69 11 chr15 54071723 54071810 -47308711 + MIR SINE MIR 107 198 -64 2133 144 0 0 chr15 54071814 54072119 -47308402 + AluSx SINE Alu 1 305 -7 464 198 0 23 chr15 54075150 54075236 -47305285 - L2 LINE L2 0 3272 3189 2393 101 0 10 chr15 54075641 54075949 -47304572 - AluSx SINE Alu -7 305 1 911 197 46 17 chr15 54076069 54076220 -47304301 + MER33 DNA MER1_type 2 164 -2421 2077 145 0 14 chr15 54076220 54076586 -47303935 - MER46B DNA MER2_type 0 236 1 911 197 46 17 chr15 54076586 54076673 -47303848 + MER33 DNA MER1_type 164 247 -77 273 273 211 40 chr15 54077229 54077504 -47303017 - L2 LINE L2 -6 3307 2986 394 293 68 31 chr15 54077644 54077835 -47302686 + MIR SINE MIR 65 262 0 2230 95 17 3 chr15 54078601 54078897 -47301624 + AluSx SINE Alu 1 300 -12 2268 99 0 3 chr15 54080252 54080566 -47299955 + AluSq SINE Alu 1 313 0 857 191 60 0 chr15 54081444 54081612 -47298909 + MER5B DNA MER1_type 1 178 0 28 79 0 0 chr15 54082428 54082491 -47298030 + GC_rich Low_complexity Low_complexity 1 63 0 220 158 26 0 chr15 54082889 54082927 -47297594 - L2 LINE L2 -13 3300 3262 231 304 43 0 chr15 54082984 54083053 -47297468 - MIR SINE MIR -92 116 45 289 289 36 12 chr15 54083094 54083177 -47297344 + MIR3 SINE MIR 70 154 -54 2213 88 13 0 chr15 54083223 54083528 -47296993 - AluSq SINE Alu -4 309 1 536 115 13 0 chr15 54083625 54083703 -47296818 + MADE1 DNA Mariner 2 80 0 1543 153 12 74 chr15 54084193 54084343 -47296178 + AluJb SINE Alu 3 124 -188 537 16 0 0 chr15 54084343 54084405 -47296116 + (CA)n Simple_repeat Simple_repeat 1 62 0 1543 153 12 74 chr15 54084405 54084580 -47295941 + AluJb SINE Alu 124 308 -4 496 213 6 33 chr15 54084586 54084769 -47295752 + GA-rich Low_complexity Low_complexity 3 180 0 * 662 102 0 82 chr15 54084750 54084946 -47295575 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 2184 118 0 6 chr15 54086001 54086315 -47294206 + AluSx SINE Alu 1 312 0 372 303 71 24 chr15 54086545 54086799 -47293722 - LTR16C LTR ERVL 0 491 226 491 285 124 57 chr15 54086958 54087312 -47293209 + LTR41 LTR ERVL 231 608 -165 348 299 203 32 chr15 54087618 54087869 -47292652 + L2 LINE L2 2977 3270 -2 2043 86 7 0 chr15 54088113 54088416 -47292105 + AluSq SINE Alu 5 309 0 2115 86 7 0 chr15 54088431 54088761 -47291760 + AluSx SINE Alu 1 332 0 1866 162 0 16 chr15 54089481 54089796 -47290725 + AluJb SINE Alu 1 310 -2 2267 102 0 0 chr15 54089991 54090294 -47290227 + AluSx SINE Alu 1 303 -9 1212 177 4 17 chr15 54090642 54090879 -47289642 + AluJb SINE Alu 78 311 -1 217 214 71 0 chr15 54090881 54090937 -47289584 - MIR SINE MIR -82 180 121 1567 162 3 69 chr15 54091716 54092050 -47288471 + AluJo SINE Alu 1 312 0 2236 88 3 3 chr15 54092309 54092614 -47287907 - AluSx SINE Alu -5 307 3 2106 128 3 3 chr15 54092616 54092928 -47287593 - AluSx SINE Alu 0 312 1 376 164 14 41 chr15 54092948 54093021 -47287500 + ORSL DNA AcHobo 2 72 -203 813 167 0 21 chr15 54093026 54093170 -47287351 - FLAM_C SINE Alu -1 142 2 905 159 53 11 chr15 54093176 54093365 -47287156 + ORSL DNA AcHobo 79 275 0 500 219 51 118 chr15 54093375 54093430 -47287091 + MER5B DNA MER1_type 3 60 -118 2562 36 3 0 chr15 54093430 54093736 -47286785 + AluY SINE Alu 1 307 -4 500 219 51 118 chr15 54093736 54093858 -47286663 + MER5B DNA MER1_type 60 168 -10 184 217 29 58 chr15 54094142 54094211 -47286310 - L2 LINE L2 -629 2685 2619 1527 167 31 21 chr15 54094882 54095170 -47285351 + AluJo SINE Alu 5 295 -17 701 147 0 96 chr15 54095310 54095446 -47285075 - FLAM_C SINE Alu -19 124 2 741 221 194 5 chr15 54095805 54096022 -47284499 + L1MA5A LINE L1 5954 6211 -86 405 163 35 12 chr15 54096116 54096202 -47284319 + L1MA5 LINE L1 6213 6300 0 345 231 56 44 chr15 54096883 54097043 -47283478 + L1ME4a LINE L1 5944 6105 -16 2102 117 0 0 chr15 54097089 54097389 -47283132 + AluSg SINE Alu 2 301 -9 184 188 0 0 chr15 54098045 54098077 -47282444 + L2 LINE L2 3014 3045 -227 342 366 69 37 chr15 54098109 54098325 -47282196 + L2 LINE L2 3034 3256 -16 897 206 129 101 chr15 54098389 54098596 -47281925 + L1ME2 LINE L1 5441 5641 -521 1983 130 16 0 chr15 54098596 54098903 -47281618 + AluSx SINE Alu 1 312 0 897 206 129 101 chr15 54098903 54099264 -47281257 + L1ME2 LINE L1 5641 6031 -131 21 57 0 0 chr15 54099276 54099311 -47281210 + AT_rich Low_complexity Low_complexity 1 35 0 691 269 25 35 chr15 54099311 54099512 -47281009 + MIR SINE MIR 48 246 -16 2095 126 3 0 chr15 54100037 54100339 -47280182 - AluSx SINE Alu -9 303 1 377 177 127 0 chr15 54100424 54100503 -47280018 + 5S rRNA rRNA 2 90 -31 2233 71 3 14 chr15 54101132 54101427 -47279094 - AluSg SINE Alu -18 292 1 7485 155 83 32 chr15 54101446 54102950 -47277571 - L1MC3 LINE L1 -2 7783 6203 1801 174 20 64 chr15 54103134 54103525 -47276996 + MLT1A2 LTR MaLR 1 374 0 233 297 0 0 chr15 54104364 54104438 -47276083 + T-rich Low_complexity Low_complexity 1 74 0 551 310 65 31 chr15 54105682 54106005 -47274516 + L2 LINE L2 1810 2143 -1171 334 273 0 11 chr15 54106032 54106120 -47274401 - MER5A DNA MER1_type -86 103 17 225 270 20 40 chr15 54106107 54106207 -47274314 + L2 LINE L2 2118 2215 -1099 * 549 346 135 18 chr15 54106208 54106717 -47273804 + L2 LINE L2 2733 3301 -12 1068 158 0 5 chr15 54107400 54107590 -47272931 + AluJo SINE Alu 122 310 -2 2093 123 7 3 chr15 54107658 54107959 -47272562 + AluSx SINE Alu 1 302 -10 34 0 0 0 chr15 54108122 54108156 -47272365 + AT_rich Low_complexity Low_complexity 1 34 0 255 325 117 40 chr15 54108527 54109004 -47271517 - L2 LINE L2 -350 2964 2451 373 340 196 0 chr15 54109493 54109702 -47270819 + MIR SINE MIR 7 256 -6 2107 119 3 3 chr15 54110778 54111088 -47269433 - AluSx SINE Alu -2 310 1 762 303 26 46 chr15 54111865 54112172 -47268349 - L3 LINE CR1 -63 1514 1214 2161 91 10 3 chr15 54112205 54112502 -47268019 - AluSg SINE Alu -11 299 1 474 204 0 0 chr15 54112528 54112631 -47267890 + CT-rich Low_complexity Low_complexity 2 104 0 1421 147 7 50 chr15 54112631 54112930 -47267591 - AluJo SINE Alu -26 286 1 254 25 0 50 chr15 54114006 54114046 -47266475 + (CAA)n Simple_repeat Simple_repeat 2 39 0 264 330 36 9 chr15 54114128 54114240 -47266281 - L3 LINE CR1 -749 828 714 258 307 11 23 chr15 54114247 54114335 -47266186 + MIR SINE MIR 12 98 -164 1671 185 80 25 chr15 54114536 54114898 -47265623 + MLT1D LTR MaLR 3 384 -121 255 267 15 107 chr15 54114988 54115119 -47265402 + L2 LINE L2 3145 3263 -9 341 297 63 9 chr15 54115145 54115256 -47265265 - L3 LINE CR1 -1127 450 334 312 239 44 71 chr15 54115530 54115643 -47264878 - L1MCa LINE L1 -6312 114 5 180 191 21 43 chr15 54115655 54115702 -47264819 - MIR SINE MIR -152 110 65 717 257 131 5 chr15 54116292 54116514 -47264007 + MIR SINE MIR 13 262 0 1945 134 37 0 chr15 54116586 54116885 -47263636 - AluSx SINE Alu -2 310 1 279 287 156 16 chr15 54117022 54117144 -47263377 - L2 LINE L2 0 3272 3134 888 175 17 79 chr15 54117869 54118109 -47262412 - AluJb SINE Alu -86 226 2 626 267 124 73 chr15 54119003 54119541 -47260980 + L2 LINE L2 2728 3312 -1 957 50 44 12 chr15 54119617 54119777 -47260744 + (GAAA)n Simple_repeat Simple_repeat 4 168 0 588 163 51 0 chr15 54120338 54120436 -47260085 + U6 snRNA snRNA 3 105 -2 489 243 64 69 chr15 54120481 54120654 -47259867 - MIR SINE MIR -75 187 16 228 235 12 86 chr15 54122786 54122867 -47257654 - L2 LINE L2 -14 3299 3225 1179 221 108 84 chr15 54122875 54123039 -47257482 - MLT1J LTR MaLR -1 510 351 2664 129 44 5 chr15 54123039 54123449 -47257072 - MSTB LTR MaLR 0 426 1 1179 221 108 84 chr15 54123449 54123782 -47256739 - MLT1J LTR MaLR -160 351 1 345 310 35 18 chr15 54124027 54124140 -47256381 - MER5A DNA MER1_type -12 177 63 408 305 61 42 chr15 54124274 54124487 -47256034 + L1ME3A LINE L1 5735 5951 -219 2148 127 0 0 chr15 54124600 54124908 -47255613 - AluSx SINE Alu -1 311 4 2082 112 0 10 chr15 54126335 54126640 -47253881 - AluY SINE Alu -1 310 9 1615 148 7 54 chr15 54126646 54126989 -47253532 - AluJb SINE Alu 0 329 1 359 276 159 7 chr15 54127407 54127552 -47252969 - MIR SINE MIR -84 178 12 197 208 21 0 chr15 54127809 54127857 -47252664 + L2 LINE L2 3264 3312 -1 1402 143 98 4 chr15 54128302 54128547 -47251974 + AluSx SINE Alu 1 268 -44 191 204 136 0 chr15 54128691 54128735 -47251786 + MIR SINE MIR 123 172 -90 995 200 27 32 chr15 54128760 54128980 -47251541 + MER20 DNA MER1_type 1 219 0 565 272 6 25 chr15 54129594 54129752 -47250769 + MIR SINE MIR 2 156 -106 1696 194 13 35 chr15 54129962 54130339 -47250182 - L1MB4 LINE L1 0 6180 5812 22 35 0 0 chr15 54132077 54132106 -47248415 + AT_rich Low_complexity Low_complexity 1 29 0 312 123 0 0 chr15 54132303 54132360 -47248161 + AluSp/q SINE Alu 244 300 -3 2227 121 0 3 chr15 54132861 54133166 -47247355 - AluSx SINE Alu -8 304 1 443 291 26 101 chr15 54133212 54133590 -47246931 - MLT1H LTR MaLR -161 388 39 277 342 81 2 chr15 54134065 54134232 -47246289 - MIR3 SINE MIR -54 154 5 256 253 11 58 chr15 54134525 54134612 -47245909 + L1ME4a LINE L1 5502 5584 -537 456 257 128 80 chr15 54134691 54134940 -47245581 - MLT1L LTR MaLR -47 568 308 229 205 68 77 chr15 54135142 54135259 -47245262 + L1ME4a LINE L1 6004 6119 -2 224 184 0 0 chr15 54136943 54136981 -47243540 - MIR SINE MIR -33 229 192 1002 186 27 5 chr15 54136981 54137147 -47243374 - AluJb SINE Alu -10 302 130 2158 68 28 86 chr15 54137147 54137472 -47243049 - AluSp SINE Alu -7 306 1 1002 186 27 5 chr15 54137472 54137493 -47243028 - AluJb SINE Alu -182 130 111 355 274 47 9 chr15 54137494 54137600 -47242921 - MIR SINE MIR -111 151 42 2316 110 0 0 chr15 54139343 54139652 -47240869 + AluSc SINE Alu 1 309 0 424 305 25 40 chr15 54139932 54140132 -47240389 + MER117 DNA MER1_type 1 197 0 211 321 0 0 chr15 54140173 54140229 -47240292 - L2 LINE L2 0 3272 3217 1768 145 7 10 chr15 54140420 54140709 -47239812 - AluJo SINE Alu -24 288 1 2062 125 0 7 chr15 54141328 54141623 -47238898 - AluSx SINE Alu -19 293 1 1684 94 22 0 chr15 54142225 54142448 -47238073 - MER30 DNA MER1_type 0 230 3 227 319 77 11 chr15 54143947 54144038 -47236483 + HAL1 LINE L1 40 136 -2371 329 266 102 50 chr15 54144266 54145862 -47234659 + HAL1 LINE L1 420 2164 -343 189 0 0 0 chr15 54146011 54146032 -47234489 + (T)n Simple_repeat Simple_repeat 1 21 0 26 0 0 0 chr15 54146103 54146129 -47234392 + AT_rich Low_complexity Low_complexity 1 26 0 311 332 59 59 chr15 54146345 54146734 -47233787 + L1M4 LINE L1 2569 2957 -3189 579 319 32 19 chr15 54146734 54146950 -47233571 + MLT1J LTR MaLR 1 219 -292 425 299 41 21 chr15 54147215 54147409 -47233112 + L1M4 LINE L1 3038 3235 -2911 270 0 0 0 chr15 54148223 54148253 -47232268 + (A)n Simple_repeat Simple_repeat 1 30 0 519 220 130 6 chr15 54150732 54150886 -47229635 - MIR SINE MIR -29 233 62 201 317 61 12 chr15 54151571 54151653 -47228868 + MIR SINE MIR 47 132 -76 2112 144 0 0 chr15 54151973 54152272 -47228249 - AluSx SINE Alu -13 299 1 207 0 0 0 chr15 54152786 54152809 -47227712 + (A)n Simple_repeat Simple_repeat 1 23 0 1823 161 14 0 chr15 54153239 54153524 -47226997 - AluJb SINE Alu -23 289 1 1749 241 72 30 chr15 54154550 54155093 -47225428 - L1ME3 LINE L1 0 6162 5597 1728 163 10 7 chr15 54155590 54155885 -47224636 + AluJo SINE Alu 6 301 -11 1503 273 60 53 chr15 54156807 54157473 -47223048 - L1ME3 LINE L1 0 6231 5561 996 268 77 11 chr15 54157474 54157851 -47222670 - L1ME3 LINE L1 -1328 4887 4486 239 300 10 10 chr15 54157849 54157949 -47222572 - L1ME3 LINE L1 -4601 1795 1696 * 706 311 74 13 chr15 54158019 54158411 -47222110 - L1ME3 LINE L1 -4810 1586 1161 377 39 20 0 chr15 54158411 54158462 -47222059 + (TG)n Simple_repeat Simple_repeat 2 53 0 706 311 74 13 chr15 54158462 54158526 -47221995 - L1ME3 LINE L1 -5235 1161 1102 1458 167 4 17 chr15 54158630 54158870 -47221651 + AluJo SINE Alu 1 237 -75 451 274 78 87 chr15 54158870 54158972 -47221549 - L1ME3 LINE L1 -5168 1037 936 2145 139 3 0 chr15 54158972 54159274 -47221247 + AluSx SINE Alu 1 303 -9 451 274 78 87 chr15 54159274 54160000 -47220521 - L1ME3 LINE L1 -5269 936 270 4796 180 24 28 chr15 54160000 54160890 -47219631 - L1MC1 LINE L1 -6 6327 5440 2075 127 3 0 chr15 54160890 54161181 -47219340 - AluSx SINE Alu -20 292 1 4796 180 24 28 chr15 54161181 54161217 -47219304 - L1MC1 LINE L1 -893 5440 5405 451 274 78 87 chr15 54161217 54161451 -47219070 - L1ME3 LINE L1 -5935 270 35 224 320 78 29 chr15 54161451 54161554 -47218967 - L2 LINE L2 -12 3260 3153 308 270 0 56 chr15 54161902 54161991 -47218530 - L2 LINE L2 -182 3090 3007 201 245 0 57 chr15 54162167 54162220 -47218301 + MIR3 SINE MIR 8 57 -151 764 272 73 0 chr15 54163698 54163904 -47216617 - MER58A DNA MER1_type 0 224 4 356 282 166 25 chr15 54165606 54165883 -47214638 - L1ME4a LINE L1 -173 5948 5633 385 81 81 0 chr15 54167033 54167095 -47213426 + MER41A LTR ERV1 400 466 -88 22 56 0 0 chr15 54167095 54167131 -47213390 + AT_rich Low_complexity Low_complexity 1 36 0 2065 152 39 39 chr15 54168108 54168469 -47212052 - THE1B LTR MaLR 0 364 4 254 311 87 50 chr15 54168555 54168716 -47211805 + MIR SINE MIR 10 176 -86 443 344 148 30 chr15 54170193 54171004 -47209517 - L2 LINE L2 -645 2669 1763 2290 136 47 8 chr15 54171067 54171428 -47209093 - THE1C LTR MaLR 0 375 1 221 323 40 24 chr15 54174197 54174321 -47206200 + L2 LINE L2 2662 2787 -527 798 185 11 121 chr15 54174699 54174964 -47205557 - MER102b DNA MER1_type -2 339 104 21 36 0 0 chr15 54174981 54175009 -47205512 + AT_rich Low_complexity Low_complexity 1 28 0 623 56 0 22 chr15 54175272 54175361 -47205160 + (TTTCC)n Simple_repeat Simple_repeat 4 90 0 2079 132 0 7 chr15 54175362 54175658 -47204863 - AluSx SINE Alu -18 294 1 21 0 0 0 chr15 54175871 54175892 -47204629 + AT_rich Low_complexity Low_complexity 1 21 0 1990 124 0 0 chr15 54175990 54176257 -47204264 - AluSx SINE Alu -5 307 41 210 300 276 33 chr15 54177077 54177287 -47203234 + L2 LINE L2 3012 3272 0 247 309 101 118 chr15 54177691 54178057 -47202464 - L2 LINE L2 -13 3259 2900 1020 210 81 66 chr15 54178090 54178293 -47202228 + L1MC5 LINE L1 7498 7697 -264 2174 132 0 0 chr15 54178293 54178596 -47201925 - AluSq SINE Alu -10 303 1 1020 210 81 66 chr15 54178596 54178801 -47201720 + L1MC5 LINE L1 7697 7912 -49 1909 159 30 0 chr15 54178807 54179136 -47201385 - AluSx SINE Alu 0 339 2 294 29 0 0 chr15 54179162 54179197 -47201324 + (TG)n Simple_repeat Simple_repeat 2 36 0 2334 125 22 33 chr15 54179310 54179678 -47200843 + THE1B LTR MaLR 1 364 0 246 105 0 0 chr15 54180846 54180884 -47199637 + (T)n Simple_repeat Simple_repeat 1 38 0 257 340 75 34 chr15 54181250 54181397 -47199124 - L2 LINE L2 -4 3268 3116 218 333 0 0 chr15 54182440 54182518 -47198003 - L2 LINE L2 -2 3270 3193 589 209 16 8 chr15 54182571 54182700 -47197821 + FLAM_A SINE Alu 2 131 -2 218 291 88 51 chr15 54182744 54183034 -47197487 - L2 LINE L2 -214 3058 2758 2295 205 45 66 chr15 54184090 54184509 -47196012 + MLT1F LTR MaLR 22 429 -113 2357 109 0 3 chr15 54184509 54184822 -47195699 - AluSx SINE Alu 0 312 1 2295 205 45 66 chr15 54184822 54184934 -47195587 + MLT1F LTR MaLR 429 542 0 280 191 32 0 chr15 54186016 54186079 -47194442 + MER20 DNA MER1_type 151 215 -4 401 0 20 0 chr15 54186099 54186148 -47194373 + (TG)n Simple_repeat Simple_repeat 2 51 0 198 160 60 20 chr15 54187065 54187115 -47193406 - L2 LINE L2 0 3313 3262 1736 170 14 0 chr15 54189262 54189550 -47190971 - AluJb SINE Alu -20 292 1 2189 138 0 0 chr15 54189993 54190298 -47190223 + AluSx SINE Alu 1 305 -7 2126 129 0 7 chr15 54190861 54191155 -47189366 + AluSx SINE Alu 15 306 -6 198 0 0 0 chr15 54191676 54191698 -47188823 + (T)n Simple_repeat Simple_repeat 1 22 0 2812 172 51 12 chr15 54191724 54192311 -47188210 - L1MD1 LINE L1 0 6242 5633 7598 207 72 54 chr15 54192351 54192830 -47187691 - L1MC/D LINE L1 -564 5678 5209 261 0 0 0 chr15 54192830 54192859 -47187662 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7598 207 72 54 chr15 54192859 54193383 -47187138 - L1MC/D LINE L1 -1033 5209 4696 2262 124 0 6 chr15 54193383 54193698 -47186823 - AluSq SINE Alu 0 313 1 7598 207 72 54 chr15 54193698 54195162 -47185359 - L1MC/D LINE L1 -1546 4696 3132 2770 51 23 3 chr15 54195162 54195512 -47185009 - L1PA8 LINE L1 0 6172 5816 7598 207 72 54 chr15 54195512 54195981 -47184540 - L1MC/D LINE L1 -3110 3132 2673 2272 182 55 0 chr15 54198497 54199109 -47181412 - L1M4 LINE L1 -494 5690 5040 24 0 0 0 chr15 54200010 54200034 -47180487 + AT_rich Low_complexity Low_complexity 1 24 0 936 199 11 0 chr15 54200111 54200310 -47180211 - L1M4 LINE L1 -1078 5068 4868 228 330 119 0 chr15 54200789 54200907 -47179614 + MIR3 SINE MIR 66 197 -11 3738 177 82 58 chr15 54200977 54201898 -47178623 + L1MC3 LINE L1 6824 7767 -18 265 189 0 0 chr15 54202293 54202346 -47178175 + L1MC3 LINE L1 7047 7099 -686 1012 123 11 48 chr15 54202486 54202673 -47177848 + L1MC3 LINE L1 7412 7591 -194 681 261 58 13 chr15 54203961 54204187 -47176334 + L3 LINE CR1 585 820 -757 376 183 0 0 chr15 54206943 54207003 -47173518 + MER1B DNA MER1_type 2 61 -276 * 1239 112 0 78 chr15 54207000 54207205 -47173316 + MER1B DNA MER1_type 151 339 0 396 289 118 20 chr15 54207290 54207494 -47173027 + MIR SINE MIR 4 227 -35 954 134 0 9 chr15 54208861 54209121 -47171400 - AluJb SINE Alu -9 303 1 247 65 43 0 chr15 54209125 54209171 -47171350 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 417 276 81 69 chr15 54209386 54209806 -47170715 - L2 LINE L2 -337 2977 2553 316 203 34 102 chr15 54209818 54209855 -47170666 + MER103 DNA DNA 13 51 -115 2144 120 27 0 chr15 54209855 54210154 -47170367 - AluSx SINE Alu -5 307 1 316 203 34 102 chr15 54210154 54210234 -47170287 + MER103 DNA DNA 51 122 -44 393 203 0 0 chr15 54211045 54211119 -47169402 + MIR3 SINE MIR 82 155 -53 568 266 18 48 chr15 54211817 54212046 -47168475 + MIR SINE MIR 28 249 -13 394 313 128 19 chr15 54212755 54213020 -47167501 + L3 LINE CR1 1190 1483 -94 303 224 75 45 chr15 54213451 54213585 -47166936 - MIR3 SINE MIR -65 143 6 2681 85 6 6 chr15 54214224 54214577 -47165944 - THE1A LTR MaLR -2 353 1 195 42 0 0 chr15 54214734 54214758 -47165763 + (ATG)n Simple_repeat Simple_repeat 3 26 0 495 336 15 39 chr15 54214779 54215019 -47165502 - MIR SINE MIR -14 248 11 1324 230 100 24 chr15 54215129 54215498 -47165023 - MLT1I LTR MaLR -12 397 1 203 206 29 73 chr15 54217373 54217441 -47163080 - MIR SINE MIR -12 250 186 1206 163 58 23 chr15 54217538 54217796 -47162725 - L1MB7 LINE L1 -16 6168 5902 321 357 6 23 chr15 54218470 54218641 -47161880 - MIR3 SINE MIR -2 206 39 562 201 215 0 chr15 54219374 54219518 -47161003 + MER5A DNA MER1_type 9 183 -6 275 293 85 30 chr15 54220860 54221024 -47159497 - MIR SINE MIR -70 192 20 974 259 108 16 chr15 54221932 54222302 -47158219 - L1MC4a LINE L1 -1980 5828 5425 4325 159 70 36 chr15 54223573 54223871 -47156650 - L1MB7 LINE L1 0 6184 5898 426 20 0 0 chr15 54223871 54223922 -47156599 + (TG)n Simple_repeat Simple_repeat 1 51 0 4325 159 70 36 chr15 54223922 54224142 -47156379 - L1MB7 LINE L1 -286 5898 5687 2357 94 0 3 chr15 54224142 54224441 -47156080 - AluSq SINE Alu -15 298 1 4325 159 70 36 chr15 54224441 54224771 -47155750 - L1MB7 LINE L1 -497 5687 5370 1990 157 3 0 chr15 54224771 54225070 -47155451 - AluSx SINE Alu -12 300 1 4325 159 70 36 chr15 54225070 54225629 -47154892 - L1MB7 LINE L1 -814 5370 4745 2587 64 0 3 chr15 54226496 54226808 -47153713 + AluY SINE Alu 1 311 0 493 276 125 5 chr15 54226863 54227044 -47153477 + MIR SINE MIR 16 223 -39 1156 198 0 35 chr15 54227044 54227276 -47153245 - MER58A DNA MER1_type 0 224 1 1325 226 75 47 chr15 54228123 54228508 -47152013 - MSTD LTR MaLR 0 396 1 21 0 0 0 chr15 54228612 54228633 -47151888 + AT_rich Low_complexity Low_complexity 1 21 0 824 140 0 44 chr15 54228638 54228774 -47151747 + FLAM_A SINE Alu 1 130 -3 880 157 131 30 chr15 54229273 54229471 -47151050 + MER20 DNA MER1_type 1 218 -1 318 263 30 40 chr15 54231887 54231986 -47148535 - MER5B DNA MER1_type 0 178 81 386 251 55 55 chr15 54234845 54235008 -47145513 - MIR SINE MIR -76 186 24 302 285 145 36 chr15 54236017 54236210 -47144311 + MIR SINE MIR 43 256 -6 267 206 159 0 chr15 54236672 54236753 -47143768 - MIR3 SINE MIR -10 198 100 401 294 0 0 chr15 54237574 54237676 -47142845 - MIR SINE MIR -55 207 106 335 267 92 62 chr15 54238545 54238598 -47141923 + MER112 DNA MER1_type 2 52 -208 1989 139 7 0 chr15 54238598 54238900 -47141621 + AluSx SINE Alu 1 304 -8 335 267 92 62 chr15 54238900 54239086 -47141435 + MER112 DNA MER1_type 52 248 -12 309 183 33 0 chr15 54239086 54239146 -47141375 - MIR SINE MIR -59 149 88 318 282 38 46 chr15 54239608 54239739 -47140782 - MIR3 SINE MIR -3 205 76 450 0 0 0 chr15 54240181 54240231 -47140290 + (CA)n Simple_repeat Simple_repeat 2 51 0 318 268 134 38 chr15 54244543 54244700 -47135821 + MIR3 SINE MIR 20 191 -17 509 260 81 23 chr15 54245660 54245833 -47134688 - MIR3 SINE MIR -11 197 15 184 324 60 108 chr15 54245840 54246303 -47134218 - L2 LINE L2 -14 3258 2818 2846 94 3 0 chr15 54246592 54246955 -47133566 - THE1B LTR MaLR 0 364 1 209 300 11 67 chr15 54247403 54247493 -47133028 - MIR SINE MIR -97 111 27 246 229 16 0 chr15 54250519 54250580 -47129941 + MIR SINE MIR 138 199 -63 2518 114 22 6 chr15 54250835 54251193 -47129328 - THE1B LTR MaLR 0 364 1 205 262 98 82 chr15 54253331 54253393 -47127128 + MIR SINE MIR 38 98 -159 428 233 78 0 chr15 54253393 54253496 -47127025 - MER81 DNA DNA -2 112 2 205 262 98 82 chr15 54253496 54253572 -47126949 + MIR SINE MIR 98 181 -76 2093 153 35 72 chr15 54253606 54254091 -47126430 - MLT1C LTR MaLR 0 467 1 338 332 14 2 chr15 54255358 54255488 -47125033 - MIR SINE MIR -65 143 27 242 294 59 39 chr15 54255609 54255711 -47124810 + L3 LINE CR1 1452 1555 -22 239 284 11 32 chr15 54255960 54256055 -47124466 + MIR SINE MIR 40 132 -76 686 151 221 23 chr15 54257586 54257758 -47122763 - MER96B DNA MER1_type? -41 376 171 2154 103 7 3 chr15 54258631 54258931 -47121590 - AluSq SINE Alu -12 301 1 614 271 13 7 chr15 54260224 54260375 -47120146 - L2 LINE L2 0 3313 3162 275 309 149 17 chr15 54260815 54260996 -47119525 + MIR3 SINE MIR 3 207 -1 248 183 146 24 chr15 54261817 54261899 -47118622 + LTR33 LTR ERVL 54 145 -376 215 368 11 0 chr15 54263080 54263175 -47117346 - MIR SINE MIR -128 134 39 596 291 108 4 chr15 54263416 54263631 -47116890 - MIR SINE MIR -23 239 11 357 208 115 35 chr15 54264820 54264953 -47115568 - MIR SINE MIR -66 196 45 2218 196 65 34 chr15 54268049 54268553 -47111968 + MLT2B1 LTR ERVL 1 520 0 320 276 145 7 chr15 54269045 54269190 -47111331 - L1ME4a LINE L1 -92 6029 5865 1870 154 168 8 chr15 54269450 54269819 -47110702 + MSTA LTR MaLR 1 428 0 714 124 297 0 chr15 54271614 54271759 -47108762 - MER5A DNA MER1_type -1 188 1 2205 100 3 3 chr15 54272452 54272763 -47107758 - AluSp SINE Alu -2 311 1 231 303 113 21 chr15 54273362 54273504 -47107017 - L3 LINE CR1 -292 1285 1131 2390 62 0 3 chr15 54274889 54275196 -47105325 - AluY SINE Alu -4 307 2 411 325 118 18 chr15 54275362 54275590 -47104931 - L1ME4a LINE L1 -58 6063 5813 519 272 49 6 chr15 54275651 54275813 -47104708 - MIR SINE MIR -2 260 92 272 286 0 0 chr15 54275907 54275970 -47104551 - L2 LINE L2 0 3272 3210 1907 125 14 0 chr15 54276563 54276851 -47103670 + AluSx SINE Alu 6 297 -15 3585 145 18 29 chr15 54276852 54277506 -47103015 - L1MB7 LINE L1 -15 6169 5523 2196 75 0 14 chr15 54278161 54278456 -47102065 - AluY SINE Alu -20 291 1 202 356 113 26 chr15 54279384 54279578 -47100943 - L3b LINE CR1 -31 1552 1342 596 301 11 0 chr15 54279652 54279835 -47100686 - MIR SINE MIR 0 262 78 1797 283 152 78 chr15 54279835 54281134 -47099387 + HAL1 LINE L1 1 1395 -1112 3174 148 43 21 chr15 54281141 54281210 -47099311 - MER44D DNA MER2_type -1886 601 535 2723 138 24 0 chr15 54281210 54281630 -47098891 + MSTB1 LTR MaLR 1 430 -2 3174 148 43 21 chr15 54281630 54282094 -47098427 - MER44D DNA MER2_type -1952 535 1 2770 252 89 38 chr15 54282096 54283139 -47097382 + HAL1 LINE L1 1400 2495 -12 1963 147 0 3 chr15 54283493 54283806 -47096715 + AluJb SINE Alu 1 312 0 214 254 0 18 chr15 54284102 54284157 -47096364 + CT-rich Low_complexity Low_complexity 2 55 0 1037 146 0 12 chr15 54285069 54285240 -47095281 + AluJb SINE Alu 104 272 -40 1028 184 42 35 chr15 54285523 54285806 -47094715 + MER33 DNA MER1_type 18 302 -22 261 0 0 0 chr15 54287222 54287251 -47093270 + (TG)n Simple_repeat Simple_repeat 2 30 0 3543 188 43 31 chr15 54287281 54288079 -47092442 - L1MB8 LINE L1 -22 6156 5350 247 274 0 0 chr15 54288335 54288386 -47092135 + L2 LINE L2 2724 2774 -540 303 304 72 48 chr15 54288545 54288670 -47091851 + L2 LINE L2 3144 3271 -1 180 0 0 0 chr15 54288695 54288715 -47091806 + (GGAA)n Simple_repeat Simple_repeat 2 21 0 465 256 173 16 chr15 54289885 54290076 -47090445 - MIR SINE MIR -14 248 28 1258 232 47 25 chr15 54290316 54290689 -47089832 + LTR16A LTR ERVL 61 457 0 358 245 168 32 chr15 54290976 54291131 -47089390 - MIR3 SINE MIR -16 192 17 285 268 145 14 chr15 54291930 54292068 -47088453 - MER103 DNA DNA -7 159 4 513 209 45 9 chr15 54292284 54292394 -47088127 + MER81 DNA DNA 1 114 0 320 253 55 75 chr15 54293458 54293604 -47086917 - L2 LINE L2 0 3313 3171 1069 220 191 6 chr15 54293610 54293955 -47086566 - L2 LINE L2 -530 2784 2376 367 343 157 24 chr15 54294021 54294096 -47086425 - MER91A DNA MER1_type -8 188 124 3833 139 20 0 chr15 54294096 54294687 -47085834 - LTR26 LTR ERV1 0 603 1 367 343 157 24 chr15 54294687 54294777 -47085744 - MER91A DNA MER1_type -72 124 1 481 281 108 6 chr15 54295327 54295494 -47085027 - MIR SINE MIR -56 206 23 412 302 44 25 chr15 54295702 54295861 -47084660 + MER5B DNA MER1_type 17 178 0 1063 339 102 13 chr15 54295961 54296595 -47083926 - L3 LINE CR1 -174 1403 713 1630 177 10 3 chr15 54296723 54297017 -47083504 - AluJb SINE Alu -16 296 1 972 251 52 19 chr15 54297268 54297539 -47082982 + LTR16A1 LTR ERVL 161 440 -17 188 268 188 18 chr15 54298623 54298735 -47081786 + L2 LINE L2 2951 3081 -191 813 309 4 9 chr15 54298795 54299025 -47081496 + MIR SINE MIR 13 241 -21 378 268 203 0 chr15 54299027 54299165 -47081356 + L2 LINE L2 3103 3268 -4 246 242 155 62 chr15 54299764 54299925 -47080596 + L3b LINE CR1 1104 1279 -304 221 313 130 35 chr15 54300728 54300843 -47079678 - L2 LINE L2 -1 3271 3146 544 221 144 46 chr15 54301001 54301195 -47079326 + MIR SINE MIR 4 218 -44 393 214 98 45 chr15 54301236 54301348 -47079173 + MIR3 SINE MIR 76 193 -15 593 277 44 44 chr15 54301816 54302065 -47078456 + MIR SINE MIR 6 254 -8 250 254 0 0 chr15 54302065 54302120 -47078401 + L2 LINE L2 2982 3036 -236 186 71 0 0 chr15 54302560 54302588 -47077933 + (CCCGG)n Simple_repeat Simple_repeat 3 30 0 22 70 0 0 chr15 54302634 54302677 -47077844 + GC_rich Low_complexity Low_complexity 1 43 0 206 214 0 143 chr15 54304824 54304862 -47075659 - L2 LINE L2 -210 3062 3041 1957 135 0 0 chr15 54304862 54305151 -47075370 - AluSx SINE Alu -23 289 1 206 214 0 143 chr15 54305151 54305196 -47075325 - L2 LINE L2 -231 3041 2991 298 259 0 0 chr15 54305266 54305324 -47075197 + Tigger3(Golem) DNA MER2_type 2 59 -2970 928 184 0 7 chr15 54305325 54305477 -47075044 + Tigger3(Golem) DNA MER2_type 2878 3028 -1 218 273 156 32 chr15 54307288 54307442 -47073079 + L2 LINE L2 2648 2820 -494 694 200 67 24 chr15 54307979 54308144 -47072377 + MER5B DNA MER1_type 1 172 -6 370 148 16 0 chr15 54308437 54308498 -47072023 + MER58 DNA MER1_type 2359 2420 0 197 246 14 101 chr15 54309174 54309243 -47071278 - L2 LINE L2 -16 3256 3194 783 265 36 4 chr15 54309746 54309999 -47070522 - MIR SINE MIR -1 261 1 202 343 19 48 chr15 54310059 54310164 -47070357 + L2 LINE L2 3191 3292 -21 1661 169 19 7 chr15 54311537 54311845 -47068676 + AluJo SINE Alu 1 312 0 317 221 130 0 chr15 54311886 54311963 -47068558 - MIR SINE MIR -113 149 63 266 213 0 13 chr15 54311963 54312038 -47068483 + (TG)n Simple_repeat Simple_repeat 1 74 0 293 294 274 4 chr15 54312430 54312678 -47067843 + L3 LINE CR1 1120 1434 -143 188 284 90 30 chr15 54312785 54312852 -47067669 + MIR3 SINE MIR 124 194 -14 1679 172 22 81 chr15 54312941 54313349 -47067172 - MLT1B LTR MaLR -3 387 4 738 260 117 17 chr15 54313417 54313648 -47066873 + MIR SINE MIR 8 261 -1 2978 142 23 2 chr15 54314053 54314539 -47065982 - L1MB3 LINE L1 0 6183 5688 266 322 220 22 chr15 54315572 54315799 -47064722 - L2 LINE L2 -7 3265 2994 643 218 37 65 chr15 54315839 54316055 -47064466 - L2 LINE L2 -1 3312 3103 2020 252 118 32 chr15 54316451 54317266 -47063255 + L1MC4 LINE L1 6800 7705 -337 1756 43 0 5 chr15 54317266 54317476 -47063045 + L1PA3 LINE L1 5944 6152 -3 2020 252 118 32 chr15 54317476 54317586 -47062935 + L1MC4 LINE L1 7705 7804 -238 260 300 160 10 chr15 54319320 54319420 -47061101 + MIR SINE MIR 121 235 -27 207 370 32 36 chr15 54319525 54319744 -47060777 + L2 LINE L2 2871 3088 -184 280 225 75 25 chr15 54319888 54319968 -47060553 + L2 LINE L2 3224 3307 -6 1251 201 206 5 chr15 54319979 54320368 -47060153 - MLT1C LTR MaLR 0 467 1 290 314 65 16 chr15 54321250 54321374 -47059147 + MIR3 SINE MIR 30 159 -49 378 328 46 46 chr15 54321827 54322022 -47058499 - MIR SINE MIR -21 241 47 1020 195 0 0 chr15 54322472 54322641 -47057880 - FAM SINE Alu -6 169 1 308 295 116 27 chr15 54323229 54323341 -47057180 - L2 LINE L2 -1 3312 3191 2343 73 0 3 chr15 54323666 54323969 -47056552 - AluY SINE Alu -9 302 1 212 0 0 35 chr15 54324093 54324122 -47056399 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 1752 180 0 0 chr15 54324124 54324408 -47056113 - AluJb SINE Alu -28 284 1 310 273 212 4 chr15 54324428 54324659 -47055862 - L1MC5 LINE L1 -39 7922 7644 406 254 139 117 chr15 54324960 54325378 -47055143 - L2 LINE L2 -4 3268 2842 31 26 0 0 chr15 54325623 54325661 -47054860 + AT_rich Low_complexity Low_complexity 1 38 0 1704 141 39 14 chr15 54326970 54327095 -47053426 + AluSx SINE Alu 1 121 -191 2181 99 7 0 chr15 54327095 54327398 -47053123 + AluSc SINE Alu 1 305 -4 1704 141 39 14 chr15 54327398 54327556 -47052965 + AluSx SINE Alu 121 291 -21 225 0 0 0 chr15 54327560 54327585 -47052936 + (T)n Simple_repeat Simple_repeat 1 25 0 452 292 101 36 chr15 54327885 54328053 -47052468 + MIR SINE MIR 78 256 -6 416 353 18 12 chr15 54328534 54328704 -47051817 - MER91A DNA MER1_type -25 171 1 237 306 0 0 chr15 54329235 54329297 -47051224 - MLT1L LTR MaLR -412 203 142 481 141 91 41 chr15 54329400 54329521 -47051000 - L1ME4a LINE L1 -18 6103 5977 285 239 119 50 chr15 54329682 54329841 -47050680 + MIR3 SINE MIR 3 172 -36 1303 152 86 83 chr15 54330087 54330389 -47050132 - AluJb SINE Alu -9 303 1 308 216 45 8 chr15 54331697 54331831 -47048690 + (TA)n Simple_repeat Simple_repeat 2 140 0 2319 80 3 10 chr15 54331937 54332249 -47048272 - AluY SINE Alu -1 310 1 360 298 61 24 chr15 54332645 54332871 -47047650 + L1MC4a LINE L1 4054 4281 -1865 23 0 0 0 chr15 54332923 54332946 -47047575 + AT_rich Low_complexity Low_complexity 1 23 0 1386 286 97 42 chr15 54333022 54334188 -47046333 + L1MC4a LINE L1 4498 5101 -1045 2152 133 0 0 chr15 54334188 54334482 -47046039 + AluSx SINE Alu 1 294 -18 1386 286 97 42 chr15 54334482 54334739 -47045782 + L1MC4a LINE L1 5101 5342 -804 23 0 0 0 chr15 54334788 54334811 -47045710 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr15 54334917 54334943 -47045578 + AT_rich Low_complexity Low_complexity 1 26 0 2005 78 0 68 chr15 54335796 54336091 -47044430 - AluSx SINE Alu -14 298 24 300 324 66 0 chr15 54336178 54336314 -47044207 + MIR SINE MIR 48 192 -70 197 167 0 0 chr15 54338082 54338118 -47042403 + GA-rich Low_complexity Low_complexity 1 36 0 295 251 139 117 chr15 54338461 54338879 -47041642 + L2 LINE L2 2842 3268 -4 304 276 217 0 chr15 54339192 54339409 -47041112 + L1MC5 LINE L1 7659 7922 -39 1868 180 0 0 chr15 54339429 54339713 -47040808 + AluJb SINE Alu 1 284 -28 180 0 0 0 chr15 54339715 54339735 -47040786 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 921 124 149 25 chr15 54339868 54340029 -47040492 + AluSq SINE Alu 1 181 -132 180 0 0 0 chr15 54340858 54340878 -47039643 + (TTCC)n Simple_repeat Simple_repeat 2 21 0 260 304 72 48 chr15 54340903 54341028 -47039493 - L2 LINE L2 -1 3271 3144 226 274 0 0 chr15 54341187 54341238 -47039283 - L2 LINE L2 -540 2774 2724 3587 188 43 31 chr15 54341494 54342292 -47038229 + L1MB8 LINE L1 5350 6156 -22 225 0 0 0 chr15 54342322 54342347 -47038174 + (CA)n Simple_repeat Simple_repeat 2 26 0 1049 184 42 35 chr15 54343763 54344046 -47036475 - MER33 DNA MER1_type -22 302 18 1102 149 0 22 chr15 54344321 54344502 -47036019 - AluJb SINE Alu -34 278 102 214 254 0 18 chr15 54345412 54345467 -47035054 + GA-rich Low_complexity Low_complexity 2 55 0 1920 166 0 6 chr15 54345763 54346076 -47034445 - AluJb SINE Alu 0 312 2 258 32 0 0 chr15 54346102 54346133 -47034388 + (TG)n Simple_repeat Simple_repeat 2 32 0 2211 125 22 33 chr15 54346246 54346614 -47033907 + THE1B LTR MaLR 1 364 0 246 105 0 0 chr15 54347784 54347822 -47032699 + (T)n Simple_repeat Simple_repeat 1 38 0 215 340 75 34 chr15 54348188 54348335 -47032186 - L2 LINE L2 -4 3268 3116 267 103 0 0 chr15 54349140 54349179 -47031342 + (GGAGAA)n Simple_repeat Simple_repeat 5 43 0 343 254 152 22 chr15 54349387 54349525 -47030996 - MIR3 SINE MIR -12 196 41 235 281 0 0 chr15 54349593 54349657 -47030864 + MIR3 SINE MIR 145 208 0 1390 201 68 7 chr15 54349989 54350283 -47030238 - AluJo SINE Alu 0 312 1 2541 74 0 3 chr15 54350533 54350844 -47029677 + AluSg SINE Alu 1 310 0 309 227 128 79 chr15 54350898 54351101 -47029420 - L1ME4a LINE L1 -30 6091 5879 210 353 46 13 chr15 54352524 54352677 -47027844 - MIR SINE MIR -29 233 76 259 290 163 32 chr15 54353872 54354124 -47026397 - L3 LINE CR1 -189 1388 1104 257 182 0 30 chr15 54354519 54354585 -47025936 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 1267 186 24 4 chr15 54356077 54356325 -47024196 + L1PA16 LINE L1 5912 6164 -2 1983 206 75 85 chr15 54357242 54357957 -47022564 - L1ME1 LINE L1 0 6166 5459 323 75 151 0 chr15 54357957 54358010 -47022511 + U7 snRNA snRNA 2 62 -1 934 103 0 109 chr15 54358149 54358323 -47022198 - MER93b LTR ERV1 -216 157 3 193 257 0 43 chr15 54359597 54359667 -47020854 + MER5B DNA MER1_type 106 172 -6 188 375 102 0 chr15 54360431 54360519 -47020002 - L2 LINE L2 -61 3211 3115 853 248 39 17 chr15 54361796 54362030 -47018491 - L1ME4a LINE L1 -391 5730 5492 372 225 93 54 chr15 54362538 54362617 -47017904 + L1ME3A LINE L1 6020 6107 -63 2015 189 150 5 chr15 54362617 54363057 -47017464 + MLT1D LTR MaLR 1 504 -1 372 225 93 54 chr15 54363057 54363106 -47017415 + L1ME3A LINE L1 6107 6153 -17 380 243 29 10 chr15 54363539 54363642 -47016879 - MER97b DNA MER1_type? -930 123 19 195 139 0 0 chr15 54363715 54363751 -47016770 + (A)n Simple_repeat Simple_repeat 1 36 0 434 198 167 24 chr15 54363803 54363929 -47016592 - L1ME3 LINE L1 -1 6161 6018 523 297 63 13 chr15 54364540 54364779 -47015742 - MIR SINE MIR 0 262 12 303 270 11 17 chr15 54365521 54365624 -47014897 + CT-rich Low_complexity Low_complexity 3 177 0 189 247 86 37 chr15 54366699 54366780 -47013741 - L2 LINE L2 -50 3263 3179 224 150 0 0 chr15 54368622 54368662 -47011859 + L2 LINE L2 3272 3311 -2 244 310 0 0 chr15 54368977 54369048 -47011473 - MER94 DNA DNA -63 71 1 264 125 0 54 chr15 54369607 54369663 -47010858 + Alu SINE Alu 1 53 -250 190 294 156 0 chr15 54370469 54370578 -47009943 - L2 LINE L2 0 3272 3147 192 40 0 0 chr15 54370987 54371012 -47009509 + (T)n Simple_repeat Simple_repeat 1 25 0 562 181 163 56 chr15 54371257 54371417 -47009104 - MER5B DNA MER1_type -1 177 1 1707 175 16 3 chr15 54371695 54371874 -47008647 - AluJo SINE Alu -5 307 121 183 80 0 0 chr15 54371874 54371899 -47008622 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1707 175 16 3 chr15 54371899 54372022 -47008499 - AluJo SINE Alu -191 121 1 338 283 58 22 chr15 54372760 54372898 -47007623 + MIR SINE MIR 120 262 0 209 247 70 96 chr15 54375775 54375931 -47004590 - MIR SINE MIR -67 141 6 32 0 0 0 chr15 54376248 54376280 -47004241 + AT_rich Low_complexity Low_complexity 1 32 0 833 283 122 29 chr15 54376363 54377002 -47003519 - L1ME LINE L1 -358 5804 5101 793 188 48 88 chr15 54377066 54377316 -47003205 + L2 LINE L2 3072 3311 -2 536 267 62 29 chr15 54377742 54377952 -47002569 + MIR SINE MIR 12 228 -34 911 163 6 30 chr15 54379801 54379967 -47000554 - MER4B LTR ERV1 -448 162 1 1277 256 156 37 chr15 54381480 54381910 -46998611 + MLT1G1 LTR MaLR 25 505 -90 188 391 0 0 chr15 54381948 54382017 -46998504 + L2 LINE L2 1531 1599 -1715 454 324 137 12 chr15 54382017 54382472 -46998049 - L2 LINE L2 0 3313 2747 430 216 105 13 chr15 54382474 54382618 -46997903 + MLT1F1 LTR MaLR 2 167 -400 2725 207 84 54 chr15 54382618 54382728 -46997793 + L1ME1 LINE L1 5330 5435 -743 781 194 0 0 chr15 54382728 54382857 -46997664 + FLAM_A SINE Alu 1 129 -4 2725 207 84 54 chr15 54382857 54383599 -46996922 + L1ME1 LINE L1 5435 6176 -2 270 281 117 23 chr15 54383671 54383842 -46996679 + L2 LINE L2 1860 2046 -1268 231 288 25 0 chr15 54383906 54383986 -46996535 + L2 LINE L2 2308 2389 -925 1699 164 7 30 chr15 54384003 54384307 -46996214 - AluJb SINE Alu -15 297 1 290 149 7 0 chr15 54384263 54384318 -46996203 - Alu SINE Alu -256 44 1 25 31 0 0 chr15 54384801 54384833 -46995688 + AT_rich Low_complexity Low_complexity 1 32 0 463 279 112 29 chr15 54384840 54385188 -46995333 + L1MC/D LINE L1 4792 5168 -978 323 211 138 53 chr15 54385260 54385412 -46995109 + L1MC/D LINE L1 5267 5431 -690 225 312 42 53 chr15 54385471 54385660 -46994861 + L1MC/D LINE L1 5550 5736 -434 247 204 0 0 chr15 54385710 54385759 -46994762 + L1MC/D LINE L1 5851 5899 -1909 2557 199 93 43 chr15 54385821 54386449 -46994072 - L1ME1 LINE L1 -5 6161 5497 2193 117 0 13 chr15 54386449 54386765 -46993756 - AluSx SINE Alu 0 312 1 2557 199 93 43 chr15 54386765 54386803 -46993718 - L1ME1 LINE L1 -669 5497 5462 1614 178 42 3 chr15 54387070 54387237 -46993284 - AluJo SINE Alu -14 298 114 306 0 0 0 chr15 54387237 54387271 -46993250 + (TG)n Simple_repeat Simple_repeat 1 34 0 1614 178 42 3 chr15 54387271 54387390 -46993131 - AluJo SINE Alu -198 114 1 420 231 51 26 chr15 54389958 54390075 -46990446 + MIR3 SINE MIR 87 206 -2 24 0 0 0 chr15 54391058 54391082 -46989439 + AT_rich Low_complexity Low_complexity 1 24 0 571 207 36 9 chr15 54392070 54392181 -46988340 + MER90 LTR ERV1 1 114 -500 1534 251 30 5 chr15 54392184 54392551 -46987970 + L1MC4a LINE L1 4571 4946 -1200 301 160 0 0 chr15 54392578 54392628 -46987893 - MLT1F1 LTR MaLR 0 567 518 264 291 12 0 chr15 54393063 54393149 -46987372 - MIR SINE MIR -79 129 43 266 349 47 9 chr15 54393175 54393281 -46987240 + MIR SINE MIR 81 190 -72 561 284 69 16 chr15 54394241 54394558 -46985963 + L1MC4a LINE L1 5494 5800 -321 1948 155 5 55 chr15 54395447 54395590 -46984931 + MLT1A1 LTR MaLR 17 165 -200 2244 106 3 0 chr15 54395590 54395883 -46984638 + AluSp SINE Alu 1 294 -19 1948 155 5 55 chr15 54395883 54396106 -46984415 + MLT1A1 LTR MaLR 165 365 0 570 232 99 51 chr15 54396276 54396673 -46983848 + LTR33 LTR ERVL 1 464 -57 343 307 92 71 chr15 54396789 54397272 -46983249 - L2 LINE L2 -252 3020 2513 1119 253 135 25 chr15 54397272 54397636 -46982885 + MLT1J2 LTR MaLR 14 417 -33 2106 122 0 3 chr15 54397888 54398182 -46982339 - AluSx SINE Alu -19 293 1 288 0 0 0 chr15 54399166 54399198 -46981323 + (TG)n Simple_repeat Simple_repeat 1 32 0 326 332 89 25 chr15 54399550 54399752 -46980769 - MIR SINE MIR -35 227 13 591 186 39 39 chr15 54400160 54400289 -46980232 - L2 LINE L2 -5 3308 3180 279 0 0 0 chr15 54400306 54400337 -46980184 + (CA)n Simple_repeat Simple_repeat 2 32 0 205 233 0 0 chr15 54400448 54400491 -46980030 - L2 LINE L2 0 3313 3271 2332 93 3 0 chr15 54400492 54400782 -46979739 - AluSp SINE Alu -21 292 2 2001 128 7 23 chr15 54401291 54401597 -46978924 - AluSx SINE Alu -11 301 1 863 163 0 15 chr15 54401620 54401755 -46978766 - FLAM_C SINE Alu 0 133 1 517 253 11 56 chr15 54401755 54401945 -46978576 - MIR SINE MIR -47 215 38 329 279 162 9 chr15 54402215 54402326 -46978195 + MIR3 SINE MIR 32 159 -49 242 173 0 58 chr15 54402612 54402664 -46977857 + L2 LINE L2 3264 3312 -1 603 74 0 0 chr15 54403198 54403279 -46977242 + (TA)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr15 54403445 54403466 -46977055 + AT_rich Low_complexity Low_complexity 1 21 0 321 322 87 0 chr15 54403488 54403637 -46976884 - MIR3 SINE MIR -14 194 33 313 308 176 6 chr15 54404176 54404335 -46976186 + L2 LINE L2 3086 3271 -1 423 249 52 27 chr15 54404895 54405149 -46975372 - L1ME4a LINE L1 -153 5968 5708 199 333 157 0 chr15 54405626 54405734 -46974787 + L2 LINE L2 3189 3313 0 528 93 0 0 chr15 54406158 54406233 -46974288 + (CA)n Simple_repeat Simple_repeat 1 75 0 185 295 39 128 chr15 54406594 54406852 -46973669 - L2 LINE L2 -4 3268 3034 3610 251 94 32 chr15 54407158 54410241 -46970280 + L1MC5 LINE L1 25 3280 -2800 665 253 65 8 chr15 54410243 54410488 -46970033 + L1MC5 LINE L1 4855 5113 -967 802 141 16 8 chr15 54410491 54410619 -46969902 + AluSq/x SINE Alu 3 131 -182 319 274 38 28 chr15 54410720 54410826 -46969695 - MIR SINE MIR -59 149 43 498 308 48 35 chr15 54410846 54411073 -46969448 - MIR SINE MIR -3 259 30 700 315 30 0 chr15 54411084 54411287 -46969234 + MER63A DNA MER1_type 2 210 0 843 252 23 41 chr15 54411957 54412175 -46968346 - MIR SINE MIR -22 240 27 208 147 0 0 chr15 54412855 54412889 -46967632 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 1309 247 82 16 chr15 54413209 54413586 -46966935 + LTR16C LTR ERVL 87 488 -3 427 270 150 49 chr15 54414131 54414357 -46966164 + MIR SINE MIR 8 256 -6 330 263 289 5 chr15 54414310 54414500 -46966021 - MIR SINE MIR -15 247 4 * 188 286 57 0 chr15 54414500 54414558 -46965963 + L2 LINE L2 3196 3257 -15 459 251 86 38 chr15 54414888 54415124 -46965397 + MIR SINE MIR 12 261 -1 201 74 0 0 chr15 54415578 54415605 -46964916 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 1959 156 0 0 chr15 54416322 54416617 -46963904 + AluJo SINE Alu 1 295 -17 1168 255 156 82 chr15 54416633 54418823 -46961698 + L1MC5 LINE L1 5478 7845 -50 233 325 16 15 chr15 54419370 54419544 -46960977 + GA-rich Low_complexity Low_complexity 1 174 0 825 176 0 8 chr15 54420112 54420243 -46960278 + FLAM_C SINE Alu 2 131 -2 192 133 0 0 chr15 54421113 54421143 -46959378 - MIR SINE MIR -142 120 91 502 136 80 32 chr15 54423582 54423707 -46956814 - Charlie1 DNA MER1_type -12 2749 2619 * 951 147 83 0 chr15 54423700 54423857 -46956664 - Charlie1 DNA MER1_type -2534 227 58 705 190 0 16 chr15 54424923 54425044 -46955477 + FLAM_A SINE Alu 2 120 -13 275 319 197 22 chr15 54426423 54426874 -46953647 + L2 LINE L2 2196 2725 -589 1358 152 30 17 chr15 54428485 54428715 -46951806 + AluJo SINE Alu 72 304 -8 2211 89 9 29 chr15 54429316 54429632 -46950889 - AluY SINE Alu -1 310 1 600 116 0 0 chr15 54430807 54430902 -46949619 - Alu SINE Alu -1 309 215 453 262 164 39 chr15 54431559 54431944 -46948577 - L1ME4a LINE L1 -89 6032 5600 301 276 60 22 chr15 54432075 54432209 -46948312 - L1ME4a LINE L1 -748 5430 5292 843 223 200 53 chr15 54432985 54433428 -46947093 - L1ME3A LINE L1 -207 5963 5422 2125 109 14 0 chr15 54433428 54433722 -46946799 - AluY SINE Alu -13 298 1 843 223 200 53 chr15 54433722 54433829 -46946692 - L1ME3A LINE L1 -748 5422 5332 856 128 14 54 chr15 54433829 54433977 -46946544 - FRAM SINE Alu -15 161 20 681 255 116 90 chr15 54434013 54434177 -46946344 - L1ME3A LINE L1 -824 5322 5164 873 163 31 0 chr15 54434177 54434306 -46946215 - FLAM_C SINE Alu 0 133 1 681 255 116 90 chr15 54434306 54434840 -46945681 - L1ME3A LINE L1 -982 5164 4606 4011 9 0 0 chr15 54435318 54435762 -46944759 - L1HS LINE L1 0 6155 5712 207 327 106 0 chr15 54437526 54437630 -46942891 - MIR3 SINE MIR -18 190 76 1923 280 129 29 chr15 54438295 54438554 -46941967 + L2 LINE L2 1784 2016 -1298 15280 112 14 53 chr15 54438554 54439058 -46941463 + Tigger1 DNA MER2_type 1 523 -1895 2542 75 0 0 chr15 54439058 54439363 -46941158 + AluSx SINE Alu 1 305 -7 15280 112 14 53 chr15 54439363 54439914 -46940607 + Tigger1 DNA MER2_type 523 1094 -1324 2519 72 0 0 chr15 54439914 54440221 -46940300 + AluY SINE Alu 1 307 -4 15280 112 14 53 chr15 54440221 54441156 -46939365 + Tigger1 DNA MER2_type 1094 1874 -544 1618 183 0 24 chr15 54441156 54441451 -46939070 - AluJb SINE Alu -23 289 2 15280 112 14 53 chr15 54441451 54441976 -46938545 + Tigger1 DNA MER2_type 1874 2418 0 1923 280 129 29 chr15 54441976 54442770 -46937751 + L2 LINE L2 2016 2943 -371 1142 103 16 27 chr15 54442778 54442962 -46937559 - Tigger1 DNA MER2_type -776 1642 1461 489 243 290 22 chr15 54442966 54443238 -46937283 + L2 LINE L2 2955 3299 -14 216 0 0 0 chr15 54443243 54443267 -46937254 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 227 238 75 25 chr15 54443445 54443525 -46936996 - MIR SINE MIR -96 166 83 207 311 56 33 chr15 54443975 54444065 -46936456 + MIR SINE MIR 93 184 -78 2351 105 0 3 chr15 54444590 54444895 -46935626 + AluSx SINE Alu 1 304 -8 1547 223 19 45 chr15 54445396 54445613 -46934908 - LTR16A LTR ERVL -25 425 204 1556 216 40 59 chr15 54445613 54446027 -46934494 + MLT1C LTR MaLR 1 406 -61 2284 78 0 29 chr15 54446027 54446039 -46934482 - AluY SINE Alu -13 298 287 462 18 0 0 chr15 54446039 54446094 -46934427 + (TATG)n Simple_repeat Simple_repeat 2 56 0 2284 78 0 29 chr15 54446094 54446388 -46934133 - AluY SINE Alu -24 287 1 1556 216 40 59 chr15 54446388 54446449 -46934072 + MLT1C LTR MaLR 406 467 0 1547 223 19 45 chr15 54446449 54446649 -46933872 - LTR16A LTR ERVL -246 204 19 379 223 19 19 chr15 54446661 54446764 -46933757 + MIR SINE MIR 107 209 -53 272 231 103 13 chr15 54446874 54446952 -46933569 - MIR SINE MIR -106 102 18 226 345 26 35 chr15 54447285 54447398 -46933123 - MIR SINE MIR -64 144 33 1777 160 0 32 chr15 54447621 54447933 -46932588 - AluJo SINE Alu -10 302 1 231 375 21 0 chr15 54449101 54449197 -46931324 + MIR3 SINE MIR 58 155 -53 475 209 19 89 chr15 54449260 54449418 -46931103 - MER103 DNA DNA -8 158 12 2462 249 95 67 chr15 54451772 54453047 -46927474 - HAL1 LINE L1 -10 2497 1187 244 212 141 98 chr15 54453045 54453229 -46927292 - HAL1 LINE L1 -1532 975 784 * 226 289 182 53 chr15 54453255 54453723 -46926798 - HAL1 LINE L1 -1778 729 202 2426 69 0 0 chr15 54453754 54454085 -46926436 - AluY SINE Alu 0 311 1 267 270 226 9 chr15 54454211 54454326 -46926195 - MIR SINE MIR -85 177 38 685 260 12 12 chr15 54454364 54454537 -46925984 + MER5B DNA MER1_type 1 173 -5 660 144 78 50 chr15 54454713 54454741 -46925780 + MER53 DNA DNA 5 31 -158 1884 60 16 12 chr15 54454741 54454991 -46925530 + L1PA8 LINE L1 5918 6168 -4 660 144 78 50 chr15 54454991 54455142 -46925379 + MER53 DNA DNA 31 189 0 626 235 27 0 chr15 54455692 54455841 -46924680 + MER96B DNA MER1_type? 23 175 0 21 0 0 0 chr15 54456566 54456587 -46923934 + AT_rich Low_complexity Low_complexity 1 21 0 445 282 172 0 chr15 54458747 54458923 -46921598 + MIR SINE MIR 57 262 0 257 286 24 0 chr15 54459210 54459294 -46921227 - L2 LINE L2 -62 3251 3166 564 292 62 5 chr15 54459651 54459843 -46920678 - MIR SINE MIR -10 252 50 264 285 123 0 chr15 54460980 54461240 -46919281 + L2 LINE L2 2043 2334 -980 799 248 113 0 chr15 54461813 54462043 -46918478 + MIR SINE MIR 7 262 0 419 203 0 0 chr15 54462249 54462318 -46918203 - MER58A DNA MER1_type -36 71 3 1772 169 19 10 chr15 54464005 54464312 -46916209 - AluJb SINE Alu -2 310 1 225 0 0 0 chr15 54465760 54465785 -46914736 + (TTTTTA)n Simple_repeat Simple_repeat 1 25 0 319 339 36 16 chr15 54466446 54466638 -46913883 + MIR SINE MIR 21 216 -46 901 152 0 0 chr15 54467415 54467560 -46912961 + AluSg/x SINE Alu 168 312 0 593 219 25 6 chr15 54467880 54468040 -46912481 + MER96B DNA MER1_type? 255 417 0 184 106 0 43 chr15 54468399 54468446 -46912075 + (TTTTTA)n Simple_repeat Simple_repeat 2 46 0 259 313 44 50 chr15 54468794 54468976 -46911545 + MIR SINE MIR 27 207 -55 659 204 89 1 chr15 54469568 54469841 -46910680 + MLT1A1 LTR MaLR 25 365 0 280 257 19 38 chr15 54470908 54471013 -46909508 - MIR3 SINE MIR -18 190 88 258 308 115 15 chr15 54471319 54471449 -46909072 - MER103 DNA DNA -21 145 3 243 254 0 0 chr15 54471551 54471610 -46908911 + MER5A DNA MER1_type 131 189 0 319 202 109 50 chr15 54471623 54471742 -46908779 - MER5B DNA MER1_type -5 173 48 742 178 72 0 chr15 54471748 54471900 -46908621 - L1MB4 LINE L1 -8 6172 6010 209 197 33 16 chr15 54471901 54471962 -46908559 - MER5B DNA MER1_type -113 65 4 545 234 145 34 chr15 54472253 54472488 -46908033 + MIR SINE MIR 2 262 0 474 274 113 72 chr15 54473778 54474287 -46906234 - Charlie8 DNA MER1_type -2183 234 11 727 214 0 14 chr15 54474486 54474626 -46905895 + FRAM SINE Alu 1 138 -38 519 217 204 0 chr15 54474661 54474818 -46905703 - MIR SINE MIR -72 190 2 1603 207 72 22 chr15 54475141 54475503 -46905018 - MLT1D LTR MaLR 0 505 126 1661 192 86 9 chr15 54475503 54475842 -46904679 - MLT1B LTR MaLR 0 390 26 575 225 0 17 chr15 54475854 54475974 -46904547 - MLT1D LTR MaLR -380 125 8 968 253 30 4 chr15 54476469 54476734 -46903787 + L1MD3 LINE L1 7714 7985 -10 2012 154 3 3 chr15 54478046 54478358 -46902163 + AluSx SINE Alu 1 312 0 24 0 0 0 chr15 54478358 54478382 -46902139 + AT_rich Low_complexity Low_complexity 1 24 0 2582 131 68 2 chr15 54479472 54479914 -46900607 - L1MB3 LINE L1 -1 6182 5712 1328 161 77 7 chr15 54479914 54480188 -46900333 - MER33 DNA MER1_type -31 293 1 284 216 80 45 chr15 54480633 54480721 -46899800 - L2 LINE L2 -23 3290 3200 927 174 33 16 chr15 54483087 54483271 -46897250 - LTR32 LTR ERVL 0 471 285 * 2125 121 3 34 chr15 54483269 54483592 -46896929 - LTR32 LTR ERVL -144 327 15 1374 203 14 3 chr15 54483885 54484171 -46896350 - L1MB7 LINE L1 -19 6165 5877 232 294 0 0 chr15 54485203 54485296 -46895225 + MIR SINE MIR 51 144 -64 197 268 28 14 chr15 54485325 54485396 -46895125 + MIR3 SINE MIR 130 201 -7 333 205 172 73 chr15 54485541 54485692 -46894829 + L1MC4 LINE L1 7551 7716 -326 872 214 29 6 chr15 54486689 54486862 -46893659 + MER20 DNA MER1_type 42 218 -1 21 0 0 0 chr15 54487100 54487121 -46893400 + AT_rich Low_complexity Low_complexity 1 21 0 747 199 19 25 chr15 54487121 54487282 -46893239 + MER5B DNA MER1_type 19 178 0 583 257 55 102 chr15 54487865 54488656 -46891865 - L1ME3A LINE L1 -204 5966 5223 1411 173 0 54 chr15 54488665 54488942 -46891579 - AluJo SINE Alu -1 311 50 763 163 65 33 chr15 54489056 54489240 -46891281 + L1MD3 LINE L1 7799 7988 -7 289 315 42 13 chr15 54489241 54489425 -46891096 - L1ME3A LINE L1 -1065 5081 4885 287 348 103 26 chr15 54489732 54489887 -46890634 - MIR3 SINE MIR -12 196 30 266 433 19 10 chr15 54489876 54490190 -46890331 + L2 LINE L2 2357 2673 -641 * 899 160 23 29 chr15 54490262 54490437 -46890084 - L1PA12 LINE L1 -5 6163 5990 293 414 38 0 chr15 54490481 54490667 -46889854 + L2 LINE L2 2870 3062 -210 273 57 0 0 chr15 54493066 54493101 -46887420 + (T)n Simple_repeat Simple_repeat 1 35 0 204 247 32 65 chr15 54493131 54493224 -46887297 - MIR SINE MIR -77 131 42 265 285 76 14 chr15 54494263 54494407 -46886114 + L1M3b LINE L1 4 156 -6125 847 154 41 18 chr15 54494422 54494591 -46885930 + L1MA6 LINE L1 6128 6300 0 834 144 52 23 chr15 54494608 54494781 -46885740 + MLT1B LTR MaLR 168 345 -45 432 0 0 0 chr15 54494907 54494955 -46885566 + (T)n Simple_repeat Simple_repeat 1 48 0 312 320 19 10 chr15 54495043 54495146 -46885375 + MER91A DNA MER1_type 12 115 -81 22 0 0 0 chr15 54495224 54495246 -46885275 + AT_rich Low_complexity Low_complexity 1 22 0 2134 116 7 0 chr15 54495253 54495564 -46884957 + AluSq SINE Alu 1 313 0 24 32 0 0 chr15 54496365 54496396 -46884125 + AT_rich Low_complexity Low_complexity 1 31 0 245 229 102 102 chr15 54496665 54496822 -46883699 - MIR SINE MIR 0 262 106 204 321 109 42 chr15 54497789 54497954 -46882567 + L2 LINE L2 2979 3154 -118 225 0 0 0 chr15 54498125 54498150 -46882371 + (CA)n Simple_repeat Simple_repeat 2 26 0 212 269 154 62 chr15 54500054 54500184 -46880337 - MIR SINE MIR -70 192 51 818 210 125 5 chr15 54500701 54500855 -46879666 - MER58A DNA MER1_type -2196 224 39 2127 114 0 3 chr15 54500855 54501144 -46879377 + AluSx SINE Alu 1 288 -24 818 210 125 5 chr15 54501144 54501189 -46879332 - MER58A DNA MER1_type -2381 39 1 266 362 17 9 chr15 54501693 54501809 -46878712 + MIR3 SINE MIR 15 131 -77 4996 158 60 10 chr15 54501826 54503012 -46877509 + L1MB3 LINE L1 4935 6181 -2 201 261 22 0 chr15 54503045 54503091 -46877430 + L3 LINE CR1 1529 1575 -2 247 295 11 53 chr15 54503242 54503337 -46877184 - MIR SINE MIR -108 154 64 241 316 124 49 chr15 54503698 54504109 -46876412 - L2 LINE L2 -10 3262 2821 259 286 33 0 chr15 54504483 54504574 -46875947 + CT-rich Low_complexity Low_complexity 2 95 0 396 258 11 0 chr15 54505200 54505293 -46875228 - L2 LINE L2 -11 3261 3168 282 329 96 84 chr15 54506028 54506372 -46874149 + L2 LINE L2 2921 3268 -4 280 330 62 0 chr15 54506558 54506655 -46873866 + L2 LINE L2 3170 3272 0 614 201 0 83 chr15 54506702 54506814 -46873707 - Zaphod DNA AcHobo 0 4031 3936 2056 115 7 0 chr15 54506814 54507100 -46873421 + AluSx SINE Alu 15 302 -10 614 201 0 83 chr15 54507100 54507156 -46873365 - Zaphod DNA AcHobo -95 3936 3877 1123 256 75 37 chr15 54507259 54507607 -46872914 - MER115 DNA AcHobo -332 361 1 856 168 0 7 chr15 54507635 54507772 -46872749 - L1PB3 LINE L1 -8 6146 6011 452 297 40 11 chr15 54508763 54508938 -46871583 + MIR3 SINE MIR 12 191 -17 315 286 46 32 chr15 54509045 54509232 -46871289 + MIR SINE MIR 1 145 -63 207 207 65 0 chr15 54509779 54509843 -46870678 + MIR SINE MIR 112 180 -82 373 297 50 0 chr15 54510409 54510510 -46870011 - L2 LINE L2 -31 3241 3136 214 290 32 16 chr15 54510743 54510805 -46869716 - MIR SINE MIR -116 146 84 426 231 83 0 chr15 54511169 54511290 -46869231 + MIR SINE MIR 111 241 -21 748 284 31 14 chr15 54512094 54512316 -46868205 - MLT1L LTR MaLR -4 611 386 409 204 129 0 chr15 54512387 54512480 -46868041 - MLT1L LTR MaLR -363 252 148 203 174 0 116 chr15 54514160 54514229 -46866292 - L2 LINE L2 -71 3242 3182 479 263 23 23 chr15 54515319 54515490 -46865031 - L1ME4a LINE L1 -278 5843 5673 5822 161 29 33 chr15 54515598 54517520 -46863001 - L1MA9 LINE L1 0 6312 4397 5696 171 20 15 chr15 54517518 54518644 -46861877 + L1 LINE L1 3315 4446 -1700 * 462 293 16 0 chr15 54518884 54519007 -46861514 + MER94 DNA DNA 6 130 -4 283 274 153 40 chr15 54519813 54520386 -46860135 + L1 LINE L1 3588 4234 -1912 1027 240 42 9 chr15 54520388 54520605 -46859916 + MER58A DNA MER1_type 1 224 0 401 191 21 0 chr15 54520655 54520749 -46859772 + (TATATG)n Simple_repeat Simple_repeat 3 98 0 2168 98 0 48 chr15 54520749 54521064 -46859457 - AluSq SINE Alu -13 300 1 735 232 83 95 chr15 54521342 54521764 -46858757 - MLT1J1 LTR MaLR -29 417 1 383 255 10 0 chr15 54522356 54522458 -46858063 + MIR SINE MIR 105 207 -55 386 258 242 0 chr15 54523201 54523329 -46857192 + MIR SINE MIR 92 250 -12 276 301 115 39 chr15 54524246 54524532 -46855989 + L1ME3A LINE L1 5633 5940 -230 31825 103 22 61 chr15 54524702 54531099 -46849422 - L1PA7 LINE L1 0 6154 12 2172 208 50 6 chr15 54531859 54532360 -46848161 - L1MC3 LINE L1 -6 7779 7257 427 265 65 125 chr15 54533217 54533729 -46846792 + L2 LINE L2 2789 3267 -5 1683 147 55 0 chr15 54533803 54534076 -46846445 - AluJb SINE Alu -24 288 1 1515 170 3 79 chr15 54534623 54534821 -46845700 - AluJo SINE Alu -18 294 127 1869 114 37 47 chr15 54534821 54535118 -46845403 + AluSx SINE Alu 3 296 -16 1515 170 3 79 chr15 54535118 54535237 -46845284 - AluJo SINE Alu -185 127 1 186 320 157 7 chr15 54535252 54535405 -46845116 + L2 LINE L2 2610 2785 -529 485 315 121 24 chr15 54535685 54536015 -46844506 - MLT1J2 LTR MaLR -22 428 67 551 218 9 9 chr15 54536066 54536176 -46844345 - MER81 DNA DNA -1 113 4 2932 91 6 0 chr15 54536902 54537264 -46843257 - THE1B LTR MaLR 0 364 1 410 228 280 21 chr15 54537370 54537559 -46842962 - MIR SINE MIR 0 262 25 592 252 138 44 chr15 54537852 54538396 -46842125 - L1ME4a LINE L1 -17 6104 5510 1198 119 5 30 chr15 54538450 54538651 -46841870 - MER2 DNA MER2_type -149 196 1 194 312 39 0 chr15 54540235 54540312 -46840209 + MIR SINE MIR 29 108 -100 202 298 0 0 chr15 54540631 54540678 -46839843 + L2 LINE L2 3234 3280 -33 241 238 16 0 chr15 54541262 54541325 -46839196 + (CATA)n Simple_repeat Simple_repeat 1 64 0 217 352 9 48 chr15 54543072 54543177 -46837344 - MIR SINE MIR -67 141 41 421 292 211 6 chr15 54543423 54543584 -46836937 - MIR SINE MIR -34 228 35 669 314 230 40 chr15 54543591 54543827 -46836694 - L3 LINE CR1 -206 1371 1181 1038 175 23 0 chr15 54543827 54543998 -46836523 - FAM SINE Alu 0 175 1 669 314 230 40 chr15 54543998 54544196 -46836325 - L3 LINE CR1 -396 1181 1022 183 42 0 0 chr15 54544196 54544220 -46836301 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 669 314 230 40 chr15 54544220 54544605 -46835916 - L3 LINE CR1 -555 1022 395 321 246 108 46 chr15 54544870 54545000 -46835521 - MIR3 SINE MIR -9 199 62 361 248 125 107 chr15 54545773 54546179 -46834342 + L1ME LINE L1 3441 3855 -2291 1279 119 16 103 chr15 54547008 54547260 -46833261 - MER30 DNA MER1_type 0 230 1 9816 205 37 25 chr15 54547944 54551096 -46829425 + L1PA16 LINE L1 2359 5561 -605 1678 146 39 93 chr15 54551096 54551452 -46829069 - MER1B DNA MER1_type 0 337 1 9816 205 37 25 chr15 54551452 54552058 -46828463 + L1PA16 LINE L1 5561 6158 -8 442 314 38 93 chr15 54552060 54552198 -46828323 + L1ME LINE L1 4132 4276 -1870 534 273 17 11 chr15 54552198 54552374 -46828147 - MER5B DNA MER1_type -1 177 1 442 314 38 93 chr15 54552374 54552584 -46827937 + L1ME LINE L1 4276 4456 -1690 571 27 0 0 chr15 54552584 54552659 -46827862 + L1PA2 LINE L1 6081 6155 0 442 314 38 93 chr15 54552659 54552729 -46827792 + L1ME LINE L1 4456 4528 -1618 507 296 181 31 chr15 54552905 54553392 -46827129 + L1ME LINE L1 4763 5322 -824 248 295 146 16 chr15 54553410 54553732 -46826789 + L1ME LINE L1 5366 5729 -392 1994 147 0 13 chr15 54553921 54554235 -46826286 - AluSq SINE Alu 0 313 4 29 28 0 0 chr15 54554240 54554276 -46826245 + AT_rich Low_complexity Low_complexity 1 36 0 1933 156 0 3 chr15 54554491 54554792 -46825729 + AluSx SINE Alu 1 300 -12 306 315 7 14 chr15 54554848 54554991 -46825530 + L1ME LINE L1 5480 5621 -500 47 44 0 0 chr15 54555346 54555414 -46825107 + AT_rich Low_complexity Low_complexity 1 68 0 284 327 47 9 chr15 54555570 54555677 -46824844 - MIR SINE MIR -62 146 36 394 204 43 0 chr15 54555839 54555932 -46824589 - MER94 DNA DNA -36 98 2 1080 233 41 72 chr15 54557064 54557275 -46823246 + Charlie4a DNA MER1_type 38 254 -1707 5375 116 6 19 chr15 54557275 54558514 -46822007 - L1PA15 LINE L1 -19 6146 4936 1080 233 41 72 chr15 54558514 54558788 -46821733 + Charlie4a DNA MER1_type 254 508 0 377 313 101 1 chr15 54559396 54559560 -46820961 - MIR SINE MIR -60 202 23 10980 156 66 16 chr15 54559612 54561729 -46818792 - Tigger7 DNA MER2_type 0 2487 265 204 67 0 0 chr15 54561884 54561914 -46818607 + (CCTG)n Simple_repeat Simple_repeat 2 31 0 1842 192 11 8 chr15 54562032 54562397 -46818124 - MER47A DNA MER2_type 0 366 1 274 237 68 0 chr15 54562479 54562538 -46817983 + L2 LINE L2 3169 3231 -41 2334 71 0 0 chr15 54562732 54563015 -46817506 + AluY SINE Alu 19 301 -10 1538 224 24 22 chr15 54563682 54564053 -46816468 - MLT1A2 LTR MaLR 0 374 3 13277 65 6 1 chr15 54564700 54566625 -46813896 - L1P2 LINE L1 -677 5477 3547 226 333 30 10 chr15 54567007 54567106 -46813415 - MIR3 SINE MIR 0 208 108 187 234 26 13 chr15 54567650 54567727 -46812794 + CT-rich Low_complexity Low_complexity 3 80 0 2934 132 78 15 chr15 54568154 54569405 -46811116 - SVA Other Other -518 868 307 306 315 7 14 chr15 54569480 54569623 -46810898 + L1ME LINE L1 5480 5621 -500 47 44 0 0 chr15 54569978 54570046 -46810475 + AT_rich Low_complexity Low_complexity 1 68 0 284 327 47 9 chr15 54570202 54570309 -46810212 - MIR SINE MIR -62 146 36 357 183 54 11 chr15 54570470 54570563 -46809958 - MER94 DNA DNA -36 98 2 545 261 10 36 chr15 54571695 54571890 -46808631 + Charlie4 DNA MER1_type 38 227 -1734 3590 142 17 57 chr15 54571906 54572603 -46807918 - L1PA15 LINE L1 -19 6146 5478 2951 167 57 53 chr15 54572934 54573652 -46806869 - MER45B DNA AcHobo -95 945 225 521 233 17 0 chr15 54573649 54573769 -46806752 - MER45B DNA AcHobo -917 123 2 * 818 212 113 64 chr15 54575361 54575706 -46804815 - LTR45B LTR ERV1 0 489 128 245 191 0 0 chr15 54575744 54575791 -46804730 - LTR45B LTR ERV1 -361 128 82 917 221 18 36 chr15 54575942 54576164 -46804357 + MER20 DNA MER1_type 1 218 -1 1753 186 40 8 chr15 54576687 54577041 -46803480 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr15 54577635 54577656 -46802865 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr15 54578385 54578410 -46802111 + (T)n Simple_repeat Simple_repeat 1 25 0 1348 247 38 0 chr15 54579236 54579580 -46800941 + MLT1A1 LTR MaLR 1 357 -8 415 173 13 0 chr15 54579644 54579719 -46800802 + MADE1 DNA Mariner 1 76 -4 430 300 14 0 chr15 54579786 54579926 -46800595 - MIR SINE MIR -117 145 4 384 213 93 9 chr15 54580391 54580499 -46800022 - MIR SINE MIR -116 146 30 192 240 60 0 chr15 54582515 54582565 -46797956 + L2 LINE L2 3214 3266 -6 22 0 0 0 chr15 54582576 54582598 -46797923 + AT_rich Low_complexity Low_complexity 1 22 0 185 136 0 23 chr15 54583398 54583442 -46797079 + (GAAAA)n Simple_repeat Simple_repeat 3 45 0 21 36 0 0 chr15 54583531 54583559 -46796962 + AT_rich Low_complexity Low_complexity 1 28 0 3870 196 87 16 chr15 54583829 54584798 -46795723 - L1MC4a LINE L1 -174 7634 6597 375 305 35 35 chr15 54585241 54585382 -46795139 - MIR SINE MIR -70 192 52 230 319 60 0 chr15 54587364 54587480 -46793041 + MER117 DNA MER1_type 73 195 -2 195 318 47 16 chr15 54588958 54589087 -46791434 + L2 LINE L2 3180 3312 -1 908 229 5 29 chr15 54589210 54589415 -46791106 + MER3 DNA MER1_type 10 209 0 793 239 33 5 chr15 54589484 54589668 -46790853 + MER5A DNA MER1_type 1 189 0 209 288 42 76 chr15 54589814 54589932 -46790589 - MER5B DNA MER1_type -63 115 2 413 230 178 0 chr15 54590180 54590315 -46790206 - MER5C DNA MER1_type -3 321 163 260 228 43 65 chr15 54590349 54590441 -46790080 - L1MC4 LINE L1 -31 8011 7922 216 86 0 0 chr15 54590478 54590513 -46790008 + (T)n Simple_repeat Simple_repeat 1 35 0 225 0 0 0 chr15 54590593 54590618 -46789903 + (T)n Simple_repeat Simple_repeat 1 25 0 803 153 0 8 chr15 54590620 54590744 -46789777 - AluSq/x SINE Alu -190 123 1 631 230 30 18 chr15 54590768 54590933 -46789588 - L1ME2 LINE L1 0 6164 5998 506 215 92 25 chr15 54590951 54591114 -46789407 - MER5C DNA MER1_type -144 180 7 347 314 0 0 chr15 54591960 54592046 -46788475 - MIR SINE MIR -120 142 57 2355 93 185 129 chr15 54592048 54592584 -46787937 - LTR12 LTR ERV1 -148 566 1 701 179 179 31 chr15 54593157 54593353 -46787168 + L1MDa LINE L1 1958 2182 -4358 6536 254 60 21 chr15 54593377 54595479 -46785042 + L1MDa LINE L1 2587 4768 -1772 304 303 103 18 chr15 54595500 54595665 -46784856 + MIR3 SINE MIR 24 202 -6 596 240 74 87 chr15 54595686 54596052 -46784469 - L1ME4a LINE L1 -5 6116 5756 214 333 0 0 chr15 54597054 54597116 -46783405 + MIR SINE MIR 42 103 -105 199 340 0 0 chr15 54597118 54597168 -46783353 + MIR SINE MIR 82 131 -131 300 27 0 0 chr15 54597391 54597428 -46783093 + (TG)n Simple_repeat Simple_repeat 1 37 0 2495 160 44 27 chr15 54597483 54597964 -46782557 + L1MB7 LINE L1 5695 6183 -1 417 302 41 29 chr15 54597966 54598211 -46782310 + L1M4 LINE L1 3349 3596 -2550 10510 193 47 22 chr15 54598217 54599721 -46780800 + L1M3f LINE L1 11 1477 -4851 2134 141 0 3 chr15 54599721 54600034 -46780487 + AluSq SINE Alu 1 312 -1 10510 193 47 22 chr15 54600034 54603122 -46777399 + L1M3f LINE L1 1477 4685 -1643 462 276 119 63 chr15 54603225 54603653 -46776868 + L1M4 LINE L1 3597 4048 -2098 352 345 30 18 chr15 54604215 54604380 -46776141 - MIR SINE MIR -79 183 17 304 293 176 14 chr15 54604882 54605104 -46775417 - L1M4 LINE L1 -1836 4310 4053 274 292 0 0 chr15 54605215 54605280 -46775241 + MER45 DNA AcHobo 1517 1581 0 1718 245 122 20 chr15 54606433 54607033 -46773488 - L1ME3A LINE L1 -6 6164 5504 188 230 130 70 chr15 54608124 54608224 -46772297 - L2 LINE L2 -1 3271 3166 289 314 35 0 chr15 54608295 54608381 -46772140 + MER94 DNA DNA 5 93 -41 184 186 0 70 chr15 54609213 54609256 -46771265 + L2 LINE L2 3233 3272 0 1014 305 47 19 chr15 54609550 54609911 -46770610 + MLT1K LTR MaLR 4 374 -214 189 224 310 0 chr15 54610374 54610432 -46770089 + MER5C DNA MER1_type 1 76 -248 198 0 0 0 chr15 54610488 54610510 -46770011 + (CAA)n Simple_repeat Simple_repeat 3 24 0 211 327 0 0 chr15 54610564 54610619 -46769902 - MER5C DNA MER1_type -269 55 1 770 201 119 0 chr15 54610742 54610901 -46769620 - MER5B DNA MER1_type 0 178 1 393 337 67 17 chr15 54610916 54611094 -46769427 - MER5A DNA MER1_type -1 188 2 337 347 25 0 chr15 54612215 54612336 -46768185 - MER94 DNA DNA -10 124 1 2277 98 0 10 chr15 54612370 54612667 -46767854 + AluSg SINE Alu 3 296 -14 2374 93 0 6 chr15 54612715 54613026 -46767495 + AluSc SINE Alu 1 309 0 457 295 28 83 chr15 54613719 54613936 -46766585 - MIR SINE MIR -5 257 53 1897 287 202 16 chr15 54614023 54614911 -46765610 + L2 LINE L2 1711 2763 -551 1785 236 67 50 chr15 54614914 54615503 -46765018 + MLT1G LTR MaLR 2 590 0 704 306 51 0 chr15 54615509 54615739 -46764782 + L2 LINE L2 2770 3010 -303 2204 233 61 8 chr15 54615744 54616251 -46764270 + MLT1F LTR MaLR 1 534 -8 532 289 62 40 chr15 54616283 54616508 -46764013 + L2 LINE L2 3077 3306 -7 554 252 107 0 chr15 54616513 54616672 -46763849 + MER117 DNA MER1_type 22 197 0 233 321 44 31 chr15 54616769 54616928 -46763593 - L3b LINE CR1 -164 1419 1259 313 286 89 0 chr15 54617190 54617302 -46763219 - L2 LINE L2 0 3313 3192 275 268 110 67 chr15 54618020 54618184 -46762337 - MIR SINE MIR -51 211 41 268 319 62 18 chr15 54619145 54619258 -46761263 - MIR SINE MIR -98 164 47 1031 161 39 0 chr15 54619463 54619643 -46760878 + MER53 DNA DNA 2 188 -1 256 219 31 0 chr15 54620012 54620076 -46760445 + C-rich Low_complexity Low_complexity 3 68 0 2129 160 42 34 chr15 54620474 54621021 -46759500 - MLT2A2 LTR ERVL 0 554 1 228 212 257 35 chr15 54621187 54621300 -46759221 + Charlie8 DNA MER1_type 53 190 -2227 322 284 76 40 chr15 54622310 54622469 -46758052 - MIR3 SINE MIR -1 207 43 258 290 30 20 chr15 54622698 54622798 -46757723 + L2 LINE L2 3193 3293 -20 230 256 44 22 chr15 54622798 54622888 -46757633 - MER94 DNA DNA 0 134 43 25 31 0 0 chr15 54622899 54622931 -46757590 + AT_rich Low_complexity Low_complexity 1 32 0 278 215 86 11 chr15 54622932 54623025 -46757496 + L1ME4a LINE L1 6019 6118 -3 16851 80 9 4 chr15 54623030 54626005 -46754516 - L1PA7 LINE L1 -1 6153 3167 1746 180 7 10 chr15 54626163 54626457 -46754064 + AluJo SINE Alu 3 295 -17 346 251 104 71 chr15 54628016 54628199 -46752322 - MIR3 SINE MIR -6 202 14 1243 237 10 30 chr15 54629255 54629683 -46750838 - AluJb SINE Alu 0 423 2 180 254 91 18 chr15 54630282 54630337 -46750184 - L3b LINE CR1 -22 1561 1503 21 0 0 0 chr15 54630450 54630471 -46750050 + AT_rich Low_complexity Low_complexity 1 21 0 1829 152 0 4 chr15 54630948 54631224 -46749297 + AluJb SINE Alu 1 275 -37 822 241 66 19 chr15 54631253 54631465 -46749056 + MIR SINE MIR 24 245 -17 255 309 45 27 chr15 54631459 54631569 -46748952 - MIR SINE MIR -62 146 35 * 249 292 146 0 chr15 54633372 54633468 -46747053 - MIR SINE MIR -70 192 83 201 320 39 39 chr15 54633529 54633657 -46746864 + MIR SINE MIR 71 198 -64 1632 213 97 18 chr15 54633891 54634347 -46746174 + L1ME1 LINE L1 5675 6166 0 257 226 262 0 chr15 54634352 54634436 -46746085 - MIR SINE MIR -147 115 10 524 289 31 6 chr15 54634543 54634702 -46745819 + MLT1I LTR MaLR 245 407 -2 1811 124 88 11 chr15 54635651 54635925 -46744596 - AluSq SINE Alu -18 295 1 230 267 40 13 chr15 54636415 54636490 -46744031 - MIR SINE MIR -109 153 77 475 252 84 7 chr15 54636695 54636838 -46743683 - MIR3 SINE MIR -39 169 16 209 308 115 32 chr15 54636930 54637086 -46743435 - MIR3 SINE MIR -7 201 33 24 32 0 0 chr15 54637971 54638002 -46742519 + AT_rich Low_complexity Low_complexity 1 31 0 24 77 0 0 chr15 54638030 54638082 -46742439 + AT_rich Low_complexity Low_complexity 1 52 0 327 49 0 0 chr15 54639158 54639199 -46741322 + (TC)n Simple_repeat Simple_repeat 1 41 0 223 321 114 8 chr15 54639554 54639685 -46740836 + MIR3 SINE MIR 16 160 -48 249 230 0 46 chr15 54640768 54640855 -46739666 + G-rich Low_complexity Low_complexity 5 87 0 2106 125 0 0 chr15 54641048 54641374 -46739147 + AluSc SINE Alu 1 326 0 527 359 65 3 chr15 54642075 54642446 -46738075 + L2 LINE L2 2553 2946 -368 330 288 97 59 chr15 54643681 54644141 -46736380 - L2 LINE L2 -33 3280 2733 191 296 121 38 chr15 54644172 54644543 -46735978 - L2 LINE L2 -558 2756 2355 278 290 150 0 chr15 54644664 54644764 -46735757 + L2 LINE L2 3154 3268 -4 213 163 0 23 chr15 54645103 54645146 -46735375 + T-rich Low_complexity Low_complexity 2 43 0 620 288 75 0 chr15 54646288 54646500 -46734021 - MIR SINE MIR -25 237 10 2293 110 0 0 chr15 54647958 54648268 -46732253 - AluY SINE Alu -1 310 1 383 313 81 0 chr15 54648511 54648671 -46731850 - MIR SINE MIR -3 259 87 198 351 73 36 chr15 54649520 54649685 -46730836 + L2 LINE L2 2866 3036 -236 21 57 0 0 chr15 54650521 54650556 -46729965 + AT_rich Low_complexity Low_complexity 1 35 0 308 301 59 54 chr15 54650754 54650940 -46729581 + MER5A DNA MER1_type 1 187 -2 12906 95 10 1 chr15 54651724 54654314 -46726207 - L1PA7 LINE L1 -3 6151 3547 197 333 30 10 chr15 54654696 54654795 -46725726 - MIR3 SINE MIR 0 208 108 187 234 26 13 chr15 54655339 54655416 -46725105 + CT-rich Low_complexity Low_complexity 3 80 0 339 287 41 8 chr15 54657423 54657545 -46722976 + MIR SINE MIR 91 216 -46 291 167 19 0 chr15 54657856 54657910 -46722611 + MIR SINE MIR 90 144 -64 620 275 52 10 chr15 54658013 54658206 -46722315 - MIR SINE MIR -48 214 14 4303 110 26 72 chr15 54658410 54659174 -46721347 - L1PA14 LINE L1 -2 7597 6869 313 93 0 0 chr15 54659180 54659223 -46721298 + L1 LINE L1 4700 4742 -1404 17392 196 12 41 chr15 54659249 54661203 -46719318 - L1PA14 LINE L1 -1013 6571 4796 2051 161 119 8 chr15 54661203 54661588 -46718933 - MSTA LTR MaLR 0 428 1 17392 196 12 41 chr15 54661588 54663676 -46716845 - L1PA14 LINE L1 -2788 4796 2648 5981 147 4 8 chr15 54663672 54664595 -46715926 - L1PA14 LINE L1 -6661 920 1 * 439 241 78 36 chr15 54664752 54665013 -46715508 - L1M2 LINE L1 -704 5447 5209 333 246 70 42 chr15 54665088 54665230 -46715291 - MIR SINE MIR -104 158 13 238 296 96 8 chr15 54666501 54666626 -46713895 + L2 LINE L2 3137 3272 0 220 309 82 0 chr15 54666972 54667069 -46713452 - MIR SINE MIR -73 135 31 268 244 109 50 chr15 54668231 54668350 -46712171 + MER5A DNA MER1_type 63 188 -1 237 349 19 0 chr15 54668384 54668490 -46712031 - MIR SINE MIR -58 150 43 259 229 267 8 chr15 54668792 54668923 -46711598 + MIR3 SINE MIR 11 175 -33 2147 162 67 8 chr15 54668927 54669298 -46711223 + MSTD LTR MaLR 4 396 0 1623 150 56 97 chr15 54669899 54670313 -46710208 - L1MB3 LINE L1 -11 6172 5776 224 30 30 0 chr15 54670521 54670554 -46709967 + (TG)n Simple_repeat Simple_repeat 2 35 0 413 137 368 0 chr15 54670716 54670811 -46709710 - L1MB3 LINE L1 -390 5793 5664 517 260 65 8 chr15 54672366 54672554 -46707967 - MIR SINE MIR -12 250 57 218 256 11 67 chr15 54674096 54674186 -46706335 - MIR SINE MIR -75 187 103 223 286 78 13 chr15 54674452 54674529 -46705992 + L2 LINE L2 3151 3232 -40 267 133 0 0 chr15 54674543 54674588 -46705933 + (GGGA)n Simple_repeat Simple_repeat 2 46 0 234 261 43 43 chr15 54675626 54675741 -46704780 + L2 LINE L2 2269 2383 -931 190 114 23 23 chr15 54679927 54679971 -46700550 + GA-rich Low_complexity Low_complexity 3 46 0 195 279 36 36 chr15 54680877 54680988 -46699533 + MIR SINE MIR 21 131 -77 261 300 0 67 chr15 54680990 54681110 -46699411 - MER5A DNA MER1_type 0 189 78 364 230 12 12 chr15 54681781 54681874 -46698647 + MER5A DNA MER1_type 21 124 -65 250 268 36 27 chr15 54681782 54681894 -46698627 - MER5A DNA MER1_type -21 168 56 * 788 209 102 25 chr15 54683293 54683528 -46696993 - MIR SINE MIR -6 256 4 331 192 0 27 chr15 54686028 54686101 -46694420 + MER116 DNA Mariner 10 80 0 2223 77 30 24 chr15 54687078 54687376 -46693145 - AluY SINE Alu -11 300 1 267 262 83 0 chr15 54687948 54688032 -46692489 + MIR SINE MIR 56 146 -62 330 272 178 26 chr15 54688051 54688242 -46692279 - MER102a DNA MER1_type 0 330 111 236 369 29 0 chr15 54688756 54688859 -46691662 + L3b LINE CR1 1410 1515 -68 677 295 34 24 chr15 54690211 54690622 -46689899 + LTR16A LTR ERVL 3 450 0 673 270 26 52 chr15 54690868 54691101 -46689420 + MIR SINE MIR 17 243 -19 423 276 163 15 chr15 54691964 54692167 -46688354 - MIR SINE MIR -6 256 24 259 224 0 0 chr15 54692903 54692961 -46687560 - L2 LINE L2 -2 3311 3254 396 217 75 19 chr15 54693635 54693741 -46686780 + MIR SINE MIR 36 147 -61 22 0 0 0 chr15 54694369 54694391 -46686130 + AT_rich Low_complexity Low_complexity 1 22 0 361 326 105 48 chr15 54694819 54695132 -46685389 + L2 LINE L2 2821 3151 -121 1339 181 46 39 chr15 54695173 54695455 -46685066 - AluJo SINE Alu -26 286 3 1273 200 11 31 chr15 54695503 54695763 -46684758 - AluJo SINE Alu -57 255 1 401 275 106 55 chr15 54695773 54695991 -46684530 - MIR SINE MIR -14 248 20 22 0 0 0 chr15 54696976 54696998 -46683523 + AT_rich Low_complexity Low_complexity 1 22 0 1949 214 87 28 chr15 54697791 54697893 -46682628 + L1ME1 LINE L1 4740 4835 -1331 2394 76 26 0 chr15 54697893 54698195 -46682326 + AluY SINE Alu 1 310 -1 1949 214 87 28 chr15 54698195 54699060 -46681461 + L1ME1 LINE L1 4835 5772 -394 1262 165 8 17 chr15 54699121 54699358 -46681163 - MER46A DNA MER2_type 0 236 2 1106 220 47 45 chr15 54699359 54699741 -46680780 + L1ME1 LINE L1 5779 6161 -5 9625 105 54 2 chr15 54700024 54702296 -46678225 - L1PA7 LINE L1 -4 6150 3775 1873 126 8 0 chr15 54702489 54702752 -46677769 + AluSx SINE Alu 1 265 -47 2728 91 220 8 chr15 54704395 54704909 -46675612 - L1PA7 LINE L1 -2334 3812 3190 420 37 0 0 chr15 54705024 54705078 -46675443 + (CA)n Simple_repeat Simple_repeat 2 55 0 397 310 122 22 chr15 54705214 54705443 -46675078 - MIR SINE MIR -8 254 3 673 254 41 0 chr15 54705569 54705738 -46674783 - MSTD LTR MaLR -2 394 219 439 223 22 50 chr15 54705782 54705921 -46674600 - MSTD LTR MaLR -257 139 5 320 232 85 0 chr15 54705922 54706004 -46674517 - MIR SINE MIR -74 188 100 485 241 259 0 chr15 54707878 54708048 -46672473 + MIR SINE MIR 47 260 -2 2388 160 54 12 chr15 54708098 54708579 -46671942 - L1MB7 LINE L1 -11 6173 5673 995 177 92 8 chr15 54708579 54708839 -46671682 - L1MB7 LINE L1 -2208 3938 3657 21 36 0 0 chr15 54709632 54709660 -46670861 + AT_rich Low_complexity Low_complexity 1 28 0 335 289 78 14 chr15 54709823 54709965 -46670556 + L1MC/D LINE L1 35 185 -6211 1476 268 111 52 chr15 54710132 54710425 -46670096 + L1MC/D LINE L1 660 934 -5462 1627 147 68 8 chr15 54710425 54710690 -46669831 - AluSx SINE Alu -31 281 1 1476 268 111 52 chr15 54710690 54711334 -46669187 + L1MC/D LINE L1 934 1539 -4857 2037 89 20 26 chr15 54711334 54711636 -46668885 + AluY SINE Alu 1 300 -11 1476 268 111 52 chr15 54711636 54712209 -46668312 + L1MC/D LINE L1 1539 2260 -4136 725 179 172 26 chr15 54712200 54712468 -46668053 + L1ME1 LINE L1 5864 6177 -1 * 1843 113 71 4 chr15 54712624 54712890 -46667631 + AluSg SINE Alu 2 285 -25 255 269 19 28 chr15 54713030 54713138 -46667383 + L1MC/D LINE L1 4581 4687 -1528 442 311 80 69 chr15 54713201 54713331 -46667190 + L1MC/D LINE L1 4767 4894 -1321 300 82 262 0 chr15 54713331 54713392 -46667129 + MADE1 DNA Mariner 2 78 -2 442 311 80 69 chr15 54713392 54713611 -46666910 + L1MC/D LINE L1 4894 5120 -1095 885 20 0 0 chr15 54713660 54713758 -46666763 + AluYb8 SINE Alu 213 310 -8 204 217 0 0 chr15 54714023 54714069 -46666452 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 230 258 71 45 chr15 54714110 54714265 -46666256 + L1MC/D LINE L1 5758 5916 -1961 2259 106 3 3 chr15 54714329 54714631 -46665890 + AluSq SINE Alu 1 302 -11 21 36 0 0 chr15 54715168 54715196 -46665325 + AT_rich Low_complexity Low_complexity 1 28 0 1072 169 166 0 chr15 54715260 54715538 -46664983 + MER33 DNA MER1_type 1 324 0 1137 237 72 9 chr15 54715692 54716013 -46664508 + MER58B DNA MER1_type 1 341 0 206 121 0 0 chr15 54718953 54718986 -46661535 + (A)n Simple_repeat Simple_repeat 1 33 0 22 70 0 0 chr15 54719168 54719211 -46661310 + AT_rich Low_complexity Low_complexity 1 43 0 26 0 0 0 chr15 54719993 54720019 -46660502 + AT_rich Low_complexity Low_complexity 1 26 0 207 69 0 0 chr15 54720034 54720063 -46660458 + (TC)n Simple_repeat Simple_repeat 1 29 0 377 284 168 4 chr15 54720330 54720811 -46659710 - L1MC/D LINE L1 -805 5341 5161 8936 123 32 30 chr15 54721698 54723943 -46656578 + L1PA10 LINE L1 3912 6157 -11 236 235 49 12 chr15 54724170 54724251 -46656270 + MER113 DNA MER1_type? 32 115 -406 610 223 130 0 chr15 54724435 54724595 -46655926 - MER5A DNA MER1_type -2 187 4 22 70 0 0 chr15 54724746 54724789 -46655732 + AT_rich Low_complexity Low_complexity 1 43 0 353 295 127 36 chr15 54724839 54725005 -46655516 - MIR SINE MIR -66 196 16 23 33 0 0 chr15 54726113 54726143 -46654378 + AT_rich Low_complexity Low_complexity 1 30 0 189 200 156 0 chr15 54726487 54726532 -46653989 - L3b LINE CR1 -39 1544 1493 352 349 71 8 chr15 54726805 54726931 -46653590 + MIR3 SINE MIR 61 194 -14 1638 196 51 24 chr15 54728064 54728430 -46652091 - L1PB4 LINE L1 -7 6149 5794 189 74 0 0 chr15 54728430 54728457 -46652064 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 204 40 0 0 chr15 54728456 54728481 -46652040 + (TA)n Simple_repeat Simple_repeat 1 25 0 1638 196 51 24 chr15 54728457 54728523 -46651998 - L1PB4 LINE L1 -362 5794 5730 780 212 33 0 chr15 54728539 54728723 -46651798 + L1 LINE L1 4408 4597 -1549 371 299 157 70 chr15 54728867 54729198 -46651323 + L2 LINE L2 2913 3272 0 3089 187 7 64 chr15 54729629 54729765 -46650756 - MER82 DNA MER2_type 0 653 511 4612 101 25 18 chr15 54729765 54730498 -46650023 - L1PB2 LINE L1 0 6151 5414 3089 187 7 64 chr15 54730498 54731051 -46649470 - MER82 DNA MER2_type -142 511 3 368 306 18 6 chr15 54731169 54731309 -46649212 + MIR SINE MIR 14 151 -63 334 210 0 0 chr15 54733004 54733066 -46647455 + MER5A DNA MER1_type 48 109 -80 231 233 0 50 chr15 54733284 54733344 -46647177 + MIR SINE MIR 195 251 -11 320 299 14 76 chr15 54733462 54733606 -46646915 + MIR SINE MIR 46 180 -82 421 202 62 0 chr15 54733861 54733990 -46646531 - L1ME4a LINE L1 -10 6111 5975 1710 93 0 0 chr15 54737306 54737551 -46642970 + AluSg/x SINE Alu 71 315 0 196 356 69 11 chr15 54739576 54739663 -46640858 - MIR3 SINE MIR -111 97 6 1785 180 92 48 chr15 54739879 54739904 -46640617 + Looper DNA T2_type 10 32 -1526 2182 97 20 10 chr15 54739904 54740204 -46640317 - AluSx SINE Alu -9 303 1 1785 180 92 48 chr15 54740204 54740701 -46639820 + Looper DNA T2_type 32 555 -1003 238 211 35 0 chr15 54791471 54791528 -46588993 + MER103 DNA DNA 65 123 -43 1708 93 0 0 chr15 54792500 54792745 -46587776 + AluSg/x SINE Alu 71 315 0 196 356 69 11 chr15 54794770 54794857 -46585664 - MIR3 SINE MIR -111 97 6 6389 174 71 22 chr15 54795073 54795098 -46585423 + Looper DNA T2_type 10 32 -1526 2165 97 20 10 chr15 54795098 54795398 -46585123 - AluSx SINE Alu -9 303 1 6389 174 71 22 chr15 54795398 54796842 -46583679 + Looper DNA T2_type 32 1552 -6 23 54 0 0 chr15 54796843 54796880 -46583641 + AT_rich Low_complexity Low_complexity 1 37 0 4223 222 27 24 chr15 54797035 54798113 -46582408 + L1MC4a LINE L1 6728 7808 0 183 232 161 0 chr15 54798439 54798495 -46582026 + MIR SINE MIR 82 146 -116 24 0 0 0 chr15 54798767 54798791 -46581730 + AT_rich Low_complexity Low_complexity 1 24 0 3451 102 34 4 chr15 54798795 54799323 -46581198 - L1PA10 LINE L1 -15 6153 5610 573 300 96 13 chr15 54799777 54800174 -46580347 - L1M4 LINE L1 -3568 2578 2149 9678 227 41 37 chr15 54800190 54802754 -46577767 + L1M2 LINE L1 15 2588 -4261 6892 186 58 21 chr15 54802902 54802988 -46577533 + L1M2 LINE L1 2525 2606 -4242 1854 137 7 14 chr15 54802988 54803281 -46577240 + AluSp SINE Alu 1 291 -22 6892 186 58 21 chr15 54803281 54804816 -46575705 + L1M2 LINE L1 2606 4326 -2522 2268 184 31 2 chr15 54804816 54805230 -46575291 - MSTB LTR MaLR 0 426 1 6892 186 58 21 chr15 54805230 54805562 -46574959 + L1M2 LINE L1 4326 4644 -2204 35077 94 18 12 chr15 54805580 54811672 -46568849 + L1PA4 LINE L1 11 6129 -26 7089 231 53 56 chr15 54811872 54814170 -46566351 - L1M4 LINE L1 -1198 4948 2659 514 240 156 16 chr15 54814308 54814558 -46565963 + L1M2 LINE L1 4786 5070 -1778 209 204 41 0 chr15 54814562 54814611 -46565910 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 23 33 0 0 chr15 54814680 54814710 -46565811 + AT_rich Low_complexity Low_complexity 1 30 0 213 225 0 0 chr15 54816391 54816431 -46564090 + CT-rich Low_complexity Low_complexity 3 42 0 187 281 70 0 chr15 54816434 54816491 -46564030 - L2 LINE L2 -6 3266 3206 588 251 78 36 chr15 54817999 54818218 -46562303 - MIR SINE MIR 0 262 35 182 344 16 62 chr15 54818289 54818417 -46562104 + L2 LINE L2 2739 2860 -454 1900 174 0 0 chr15 54818818 54819123 -46561398 - MLT1A1 LTR MaLR -3 362 58 1252 139 58 43 chr15 54819128 54819386 -46561135 - Tigger7 DNA MER2_type -1 2486 2225 312 115 0 19 chr15 54819431 54819483 -46561038 - MLT1A1 LTR MaLR -312 53 3 364 382 92 24 chr15 54819524 54819862 -46560659 + L2 LINE L2 2897 3257 -15 233 316 174 0 chr15 54820461 54820559 -46559962 + MIR3 SINE MIR 48 162 -46 383 324 77 6 chr15 54820562 54820744 -46559777 - MER117 DNA MER1_type -1 196 2 5832 78 82 1 chr15 54821760 54822593 -46557928 + L1PA7 LINE L1 5254 6153 -1 385 313 37 11 chr15 54823280 54823465 -46557056 + MIR SINE MIR 37 226 -36 315 155 113 82 chr15 54825607 54825618 -46554903 - L1MA10 LINE L1 -58 6276 6266 1192 194 58 58 chr15 54825618 54825963 -46554558 - L1ME1 LINE L1 -61 6105 5761 423 252 119 7 chr15 54826055 54826206 -46554315 + MIR SINE MIR 74 241 -21 503 229 86 6 chr15 54827109 54827284 -46553237 + MER53 DNA DNA 1 189 0 22 0 0 0 chr15 54828115 54828137 -46552384 + AT_rich Low_complexity Low_complexity 1 22 0 205 189 0 0 chr15 54828152 54828189 -46552332 + A-rich Low_complexity Low_complexity 5 41 0 672 108 0 0 chr15 54829215 54829317 -46551204 - AluSg/x SINE Alu -4 308 207 210 286 10 51 chr15 54829410 54829508 -46551013 - L3 LINE CR1 -868 709 616 * 255 211 70 14 chr15 54829485 54829556 -46550965 - MIR3 SINE MIR -133 75 1 399 319 43 32 chr15 54831950 54832135 -46548386 + MIR SINE MIR 54 240 -22 198 346 25 25 chr15 54832159 54832240 -46548281 - L2 LINE L2 -4 3268 3188 1142 271 41 74 chr15 54833255 54833839 -46546682 + L1ME3A LINE L1 5365 5929 -241 184 371 72 0 chr15 54834256 54834353 -46546168 + L2 LINE L2 3169 3272 0 49 18 0 0 chr15 54834416 54834472 -46546049 + AT_rich Low_complexity Low_complexity 1 56 0 34 42 0 0 chr15 54835029 54835077 -46545444 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr15 54836351 54836379 -46544142 + AT_rich Low_complexity Low_complexity 1 28 0 1998 130 11 3 chr15 54836429 54836714 -46543807 - AluSq SINE Alu -26 287 1 233 279 76 13 chr15 54836852 54836931 -46543590 - MIR SINE MIR -71 191 108 207 0 0 0 chr15 54836957 54836980 -46543541 + (T)n Simple_repeat Simple_repeat 1 23 0 591 232 197 0 chr15 54837153 54837295 -46543226 - MER58A DNA MER1_type -54 170 1 213 65 0 0 chr15 54838089 54838120 -46542401 + (A)n Simple_repeat Simple_repeat 1 31 0 496 123 0 12 chr15 54842792 54842873 -46537648 - MADE1 DNA Mariner 0 80 1 278 159 0 0 chr15 54843352 54843396 -46537125 - L2 LINE L2 -8 3305 3262 418 243 83 35 chr15 54844043 54844212 -46536309 - MER5B DNA MER1_type 0 178 2 192 342 90 18 chr15 54846853 54846964 -46533557 + L2 LINE L2 2605 2723 -591 208 274 55 14 chr15 54847032 54847105 -46533416 + MER5A DNA MER1_type 69 144 -45 22 35 0 0 chr15 54847651 54847680 -46532841 + AT_rich Low_complexity Low_complexity 1 29 0 503 242 7 27 chr15 54847716 54847865 -46532656 - MLT1G LTR MaLR -7 583 438 261 226 140 11 chr15 54847873 54847966 -46532555 - MLT1G1 LTR MaLR -490 105 1 374 331 81 107 chr15 54847983 54848442 -46532079 + L2 LINE L2 2825 3271 -1 4219 83 0 2 chr15 54849211 54849765 -46530756 - MER41A LTR ERV1 -1 553 1 268 357 103 6 chr15 54850141 54850357 -46530164 - MIR SINE MIR -13 249 16 618 305 13 0 chr15 54850615 54850769 -46529752 + MIR SINE MIR 10 165 -97 189 107 0 0 chr15 54850845 54850873 -46529648 + (TTA)n Simple_repeat Simple_repeat 1 28 0 2187 125 0 0 chr15 54850915 54851218 -46529303 + AluSx SINE Alu 1 303 -9 218 184 0 0 chr15 54851272 54851310 -46529211 + (TATG)n Simple_repeat Simple_repeat 2 39 0 1801 165 15 69 chr15 54851445 54851852 -46528669 - MLT1B LTR MaLR 0 390 6 1394 229 20 7 chr15 54852197 54852490 -46528031 - AluJo SINE Alu -15 297 1 547 321 42 46 chr15 54853698 54853935 -46526586 + MIR SINE MIR 14 249 -13 810 258 72 46 chr15 54853998 54854123 -46526398 - L1MC5 LINE L1 -51 7910 7790 2264 88 27 0 chr15 54854123 54854418 -46526103 - AluSg SINE Alu -7 303 1 810 258 72 46 chr15 54854418 54854919 -46525602 - L1MC5 LINE L1 -171 7790 7268 216 333 88 35 chr15 54855457 54855571 -46524950 - L2 LINE L2 -15 3257 3138 1990 168 69 11 chr15 54855997 54856431 -46524090 + L1MB8 LINE L1 5718 6176 -2 245 271 24 12 chr15 54856493 54856578 -46523943 - L2 LINE L2 -1347 1967 1882 1335 237 63 6 chr15 54856911 54857274 -46523247 + L1MC4 LINE L1 7483 7866 -176 * 2865 196 62 7 chr15 54857259 54858144 -46522377 + L1M1 LINE L1 3356 4282 -3283 260 270 60 10 chr15 54858144 54858244 -46522277 - Tigger3(Golem) DNA MER2_type -232 2797 3 183 271 0 0 chr15 54858337 54858407 -46522114 + (TA)n Simple_repeat Simple_repeat 1 70 0 23 78 0 0 chr15 54858454 54858505 -46522016 + AT_rich Low_complexity Low_complexity 1 51 0 283 273 99 43 chr15 54858508 54858812 -46521709 + L1MEd LINE L1 904 1224 -4895 385 288 81 81 chr15 54858843 54859128 -46521393 + L1MEd LINE L1 2295 2579 -3550 240 280 39 9 chr15 54859188 54859420 -46521101 + L1MEd LINE L1 2768 3006 -3123 343 253 123 13 chr15 54859432 54859661 -46520860 + L1ME LINE L1 4733 4991 -1155 947 293 49 17 chr15 54859816 54860488 -46520033 + L1ME LINE L1 5004 5695 -467 475 299 69 13 chr15 54860489 54860732 -46519789 + MLT1H1 LTR MaLR 1 297 -252 1784 273 88 13 chr15 54860821 54861731 -46518790 + L1MEd LINE L1 3077 4054 -2075 1137 260 103 32 chr15 54861887 54862695 -46517826 + L1MEd LINE L1 4284 5148 -981 367 130 29 0 chr15 54862703 54862772 -46517749 + MER69 DNA AcHobo 2447 2517 -9 2368 86 3 3 chr15 54863180 54863483 -46517038 + AluY SINE Alu 1 303 -8 992 264 34 4 chr15 54863718 54863953 -46516568 - MIR SINE MIR 0 262 21 359 276 105 0 chr15 54863971 54864076 -46516445 - MIR3 SINE MIR -26 182 67 3794 188 60 19 chr15 54864696 54865351 -46515170 - L1MB7 LINE L1 -21 6661 6035 2564 116 3 13 chr15 54865351 54865730 -46514791 - THE1C LTR MaLR 0 375 1 3794 188 60 19 chr15 54865730 54866848 -46513673 - L1MB7 LINE L1 -647 6035 4819 1405 91 0 5 chr15 54866848 54867035 -46513486 - AluY SINE Alu -15 296 111 824 48 10 0 chr15 54867135 54867238 -46513283 - AluY SINE Alu -207 104 1 4481 207 65 21 chr15 54867238 54868043 -46512478 - L1MB7 LINE L1 -1818 4826 3933 262 0 53 0 chr15 54868043 54868081 -46512440 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 4481 207 65 21 chr15 54868081 54868679 -46511842 - L1MB7 LINE L1 -2711 3933 3362 1546 145 52 50 chr15 54868672 54869100 -46511421 - L1PA8A LINE L1 -252 5879 5498 * 647 130 17 9 chr15 54869209 54869324 -46511197 + L1PA16 LINE L1 6043 6158 -8 1567 242 36 13 chr15 54869332 54869857 -46510664 - L1MB7 LINE L1 -3267 3377 2841 1686 190 11 25 chr15 54870362 54870705 -46509816 - MLT1A1 LTR MaLR -27 478 1 1134 207 61 23 chr15 54870705 54871227 -46509294 - L1MB7 LINE L1 -3798 2846 2308 3959 209 40 18 chr15 54871327 54872484 -46508037 - L1MB7 LINE L1 -4771 1875 690 1262 238 38 30 chr15 54872479 54872845 -46507676 - L1MB7 LINE L1 -6168 374 6 * 1476 184 10 35 chr15 54872858 54873166 -46507355 - AluJb SINE Alu 0 301 1 670 293 22 0 chr15 54873853 54874034 -46506487 + MIR SINE MIR 28 212 -50 1057 196 0 16 chr15 54874224 54874413 -46506108 + AluJo SINE Alu 2 187 -125 2071 132 4 0 chr15 54875406 54875712 -46504809 - AluSx SINE Alu 0 307 1 403 354 27 42 chr15 54875959 54876219 -46504302 - L2 LINE L2 -213 3059 2804 1079 291 59 18 chr15 54876659 54877048 -46503473 - LTR16C LTR ERVL 0 491 87 259 366 91 7 chr15 54877261 54877548 -46502973 - L2 LINE L2 -639 2675 2365 1676 184 3 3 chr15 54878060 54878396 -46502125 - AluJb SINE Alu 0 336 1 1834 204 148 0 chr15 54879244 54879684 -46500837 + MLT1D LTR MaLR 1 505 0 204 394 31 19 chr15 54880060 54880220 -46500301 - L2 LINE L2 -803 2511 2350 4473 69 41 0 chr15 54880891 54881472 -46499049 - LTR14B LTR ERVK 0 608 4 269 364 62 6 chr15 54881476 54881638 -46498883 + MIR SINE MIR 34 204 -58 1078 249 43 77 chr15 54881646 54882003 -46498518 + MER74B LTR ERVL 67 404 -218 1788 145 3 40 chr15 54882003 54882306 -46498215 + AluJo SINE Alu 5 296 -16 1078 249 43 77 chr15 54882306 54882439 -46498082 + MER74B LTR ERVL 404 540 -82 318 149 0 40 chr15 54882389 54882463 -46498058 - MER88 LTR ERVL -315 149 79 * 183 80 0 0 chr15 54882665 54882690 -46497831 + (CTAAT)n Simple_repeat Simple_repeat 4 28 0 597 294 15 30 chr15 54882867 54883068 -46497453 - MIR SINE MIR -57 205 8 227 342 103 54 chr15 54884314 54884344 -46496177 + MIR3 SINE MIR 16 43 -165 2169 136 0 3 chr15 54884344 54884653 -46495868 + AluSg SINE Alu 1 308 -2 227 342 103 54 chr15 54884653 54884806 -46495715 + MIR3 SINE MIR 43 208 0 273 292 85 46 chr15 54884976 54885106 -46495415 + L2 LINE L2 3138 3272 0 21 0 0 0 chr15 54885113 54885134 -46495387 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr15 54885226 54885257 -46495264 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr15 54885979 54886005 -46494516 + AT_rich Low_complexity Low_complexity 1 26 0 349 348 17 0 chr15 54887140 54887258 -46493263 + MIR SINE MIR 28 147 -61 2090 133 10 0 chr15 54887302 54887595 -46492926 + AluSx SINE Alu 1 296 -16 1347 38 0 0 chr15 54888267 54888427 -46492094 - L1PA3 LINE L1 0 6155 5996 206 371 34 41 chr15 54888691 54888946 -46491575 - L2 LINE L2 -337 2977 2723 2253 114 0 0 chr15 54888946 54889263 -46491258 + AluSq SINE Alu 1 313 0 206 371 34 41 chr15 54889263 54889298 -46491223 - L2 LINE L2 -591 2723 2689 1074 278 82 41 chr15 54889618 54890452 -46490069 - L1ME3A LINE L1 -221 5949 5086 963 123 130 0 chr15 54891136 54891298 -46489223 + AluSg/x SINE Alu 125 307 -3 303 279 86 14 chr15 54891439 54891579 -46488942 + L1MC4a LINE L1 2264 2413 -3733 1691 226 107 48 chr15 54891697 54891907 -46488614 - MLT2F LTR ERVL -43 620 424 1576 189 54 24 chr15 54891907 54892240 -46488281 - MER61A LTR ERV1 0 343 1 1691 226 107 48 chr15 54892240 54892572 -46487949 - MLT2F LTR ERVL -239 424 46 302 293 17 26 chr15 54892618 54892734 -46487787 + L1MC4a LINE L1 3187 3301 -2845 321 273 87 57 chr15 54892970 54893336 -46487185 + L1MC4a LINE L1 3589 3965 -2181 43876 32 21 1 chr15 54893379 54899409 -46481112 + L1PA2 LINE L1 1 6155 0 235 217 70 78 chr15 54899469 54899584 -46480937 - MLT1L LTR MaLR -416 199 86 2293 95 0 7 chr15 54899601 54899895 -46480626 - AluY SINE Alu -19 292 1 379 333 42 42 chr15 54899985 54900297 -46480224 + L1MC4a LINE L1 4249 4560 -1586 331 323 57 53 chr15 54900473 54900755 -46479766 + L1MC4a LINE L1 4939 5221 -925 225 274 153 13 chr15 54900783 54900940 -46479581 + L1P5 LINE L1 5254 5432 -724 447 224 103 8 chr15 54901031 54901227 -46479294 + L1MC4a LINE L1 5597 5827 -294 2219 105 6 19 chr15 54901360 54901674 -46478847 - AluSx SINE Alu -2 310 1 262 174 43 0 chr15 54902281 54902327 -46478194 + MER5A DNA MER1_type 69 116 -73 315 323 8 31 chr15 54903083 54903210 -46477311 + L2 LINE L2 3189 3312 -1 452 334 135 20 chr15 54903591 54904198 -46476323 + L2 LINE L2 2254 2930 -384 395 316 130 46 chr15 54904232 54904555 -46475966 + L2 LINE L2 2964 3313 0 386 236 188 14 chr15 54911064 54911208 -46469313 - MIR SINE MIR -89 173 5 22 70 0 0 chr15 54911258 54911301 -46469220 + AT_rich Low_complexity Low_complexity 1 43 0 623 290 89 32 chr15 54911425 54911827 -46468694 - L1ME LINE L1 -412 5709 5297 21 0 0 0 chr15 54911842 54911863 -46468658 + AT_rich Low_complexity Low_complexity 1 21 0 370 337 58 0 chr15 54911884 54912142 -46468379 - L1ME LINE L1 -1097 5049 4777 2396 99 0 10 chr15 54912383 54912696 -46467825 + AluSg SINE Alu 1 310 0 1996 121 57 0 chr15 54912870 54913152 -46467369 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr15 54913158 54913179 -46467342 + AT_rich Low_complexity Low_complexity 1 21 0 1240 281 83 41 chr15 54913406 54914420 -46466101 - L1MEd LINE L1 -765 1725 574 270 236 137 15 chr15 54915362 54915496 -46465025 + L1ME LINE L1 5740 5889 -232 267 190 0 0 chr15 54915533 54915591 -46464930 + (CA)n Simple_repeat Simple_repeat 2 59 0 561 164 77 0 chr15 54915891 54915995 -46464526 + MER103 DNA DNA 12 123 -43 510 282 153 5 chr15 54917040 54917256 -46463265 + MIR SINE MIR 15 262 0 376 308 8 0 chr15 54917739 54917856 -46462665 - MER102a DNA MER1_type -27 303 186 22 0 0 0 chr15 54919311 54919333 -46461188 + AT_rich Low_complexity Low_complexity 1 22 0 1031 211 0 0 chr15 54924227 54924407 -46456114 - LTR32 LTR ERVL -120 351 172 542 262 30 91 chr15 54925433 54925696 -46454825 + MIR SINE MIR 16 262 0 257 291 0 0 chr15 54926074 54926129 -46454392 - L2 LINE L2 -4 3268 3214 5860 159 27 21 chr15 54926497 54927576 -46452945 - L1MA4 LINE L1 -1 6299 5212 339 145 0 53 chr15 54927688 54927764 -46452757 + LTR49 LTR ERV1 456 527 -68 808 365 78 9 chr15 54929284 54929706 -46450815 + L3 LINE CR1 1067 1517 -60 1006 269 165 3 chr15 54929801 54930110 -46450411 + MLT1G1 LTR MaLR 237 595 0 268 304 36 9 chr15 54932675 54932787 -46447734 - L1MC4a LINE L1 -1882 5926 5812 203 358 29 44 chr15 54932938 54933075 -46447446 - L2 LINE L2 -5 3267 3133 818 220 136 62 chr15 54933254 54933423 -46447098 - MER102b DNA MER1_type -1096 332 177 573 133 11 0 chr15 54933423 54933513 -46447008 + L1MD1 LINE L1 6151 6241 -1 818 220 136 62 chr15 54933513 54933652 -46446869 - MER102b DNA MER1_type -1251 177 1 280 311 67 50 chr15 54933973 54934153 -46446368 - MIR SINE MIR -31 231 49 320 268 93 60 chr15 54934610 54934793 -46445728 - MIR SINE MIR -28 234 46 2114 122 13 10 chr15 54934841 54935152 -46445369 - AluSx SINE Alu 0 312 1 2048 128 0 30 chr15 54935154 54935458 -46445063 - AluJb SINE Alu -17 295 1 450 253 0 0 chr15 54935706 54935789 -46444732 - AluJb SINE Alu -28 284 202 182 319 14 42 chr15 54937202 54937274 -46443247 - MIR3 SINE MIR -136 72 3 2223 116 7 0 chr15 54937537 54937830 -46442691 - AluSc SINE Alu -14 295 1 180 0 0 0 chr15 54938061 54938081 -46442440 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1001 119 0 0 chr15 54938085 54938219 -46442302 - AluSg/x SINE Alu -45 267 134 2238 85 14 3 chr15 54938219 54938514 -46442007 - AluSq SINE Alu -15 298 1 363 44 0 0 chr15 54938962 54939007 -46441514 + (CAT)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr15 54939150 54939178 -46441343 + AT_rich Low_complexity Low_complexity 1 28 0 645 292 116 17 chr15 54939231 54939464 -46441057 + MIR SINE MIR 7 262 0 485 314 38 6 chr15 54940818 54940977 -46439544 + MIR3 SINE MIR 20 183 -25 1861 145 19 22 chr15 54941127 54941438 -46439083 + AluJo SINE Alu 1 310 -2 183 367 0 0 chr15 54943006 54943066 -46437455 - L2 LINE L2 -11 3302 3243 464 304 43 14 chr15 54943081 54943288 -46437233 + MIR SINE MIR 13 225 -37 1594 180 4 0 chr15 54943359 54943626 -46436895 + AluJo SINE Alu 1 268 -44 1812 114 24 4 chr15 54943739 54943994 -46436527 - AluSg SINE Alu -14 296 37 205 273 36 0 chr15 54944362 54944417 -46436104 - L2 LINE L2 0 3313 3257 33 25 0 0 chr15 54944614 54944654 -46435867 + AT_rich Low_complexity Low_complexity 1 40 0 790 300 73 0 chr15 54944667 54944900 -46435621 + MIR SINE MIR 13 262 0 1889 152 110 3 chr15 54945032 54945342 -46435179 - MER2 DNA MER2_type -1 343 1 247 329 58 0 chr15 54945487 54945642 -46434879 - L1ME LINE L1 -384 5737 5574 307 256 51 0 chr15 54945933 54946011 -46434510 + MIR SINE MIR 2 83 -179 252 0 0 0 chr15 54946631 54946659 -46433862 + (TG)n Simple_repeat Simple_repeat 1 28 0 180 77 0 0 chr15 54946661 54946687 -46433834 + (GA)n Simple_repeat Simple_repeat 2 27 0 202 333 0 0 chr15 54946881 54946938 -46433583 - L2 LINE L2 -3 3310 3254 406 259 60 0 chr15 54947553 54947669 -46432852 + L2 LINE L2 3191 3313 0 251 295 63 21 chr15 54947668 54947763 -46432758 - L2 LINE L2 -25 3247 3149 * 1049 156 117 54 chr15 54947776 54947981 -46432540 + MER20 DNA MER1_type 1 218 -1 406 287 23 16 chr15 54952241 54952370 -46428151 - MIR SINE MIR -50 212 83 253 195 0 78 chr15 54953084 54953161 -46427360 - MER5B DNA MER1_type 0 178 108 253 234 62 0 chr15 54953144 54953208 -46427313 + MER5B DNA MER1_type 106 173 -5 1092 160 22 0 chr15 54953345 54953526 -46426995 + MER20 DNA MER1_type 35 219 0 228 35 0 0 chr15 54954259 54954288 -46426233 + (CA)n Simple_repeat Simple_repeat 2 30 0 279 0 0 0 chr15 54954547 54954578 -46425943 + (TG)n Simple_repeat Simple_repeat 2 32 0 182 118 29 0 chr15 54954933 54954967 -46425554 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 258 244 12 49 chr15 54955140 54955222 -46425299 + ORSL DNA AcHobo 1 79 -196 294 271 82 8 chr15 54955761 54955883 -46424638 - MIR SINE MIR -81 181 51 376 224 26 0 chr15 54955894 54955970 -46424551 + MER81 DNA DNA 1 78 -36 800 267 202 23 chr15 54956193 54956839 -46423682 + L2 LINE L2 2508 3310 -3 341 286 152 0 chr15 54956846 54956951 -46423570 + MIR SINE MIR 36 156 -106 1147 188 21 71 chr15 54957241 54957581 -46422940 - L1MC5 LINE L1 -33 7928 7606 476 176 165 0 chr15 54957621 54957712 -46422809 - FLAM_A SINE Alu -36 106 1 478 280 176 5 chr15 54958730 54958923 -46421598 + MIR SINE MIR 1 226 -36 2274 223 74 58 chr15 54959246 54960478 -46420043 + L1ME2 LINE L1 4571 5822 -342 40947 69 3 11 chr15 54960483 54966685 -46413836 + L1PA5 LINE L1 4 6154 0 1197 254 11 37 chr15 54966669 54967020 -46413501 + L1ME2 LINE L1 5808 6149 -15 * 1510 220 17 6 chr15 54967028 54967374 -46413147 + L1MB7 LINE L1 1523 1872 -4512 877 205 30 34 chr15 54967434 54967697 -46412824 + L1MB7 LINE L1 4532 4793 -1589 943 289 9 33 chr15 54968231 54968560 -46411961 + MLT1E2 LTR MaLR 1 321 -305 531 213 37 22 chr15 54968535 54968691 -46411830 + MLT1D LTR MaLR 240 505 0 * 4057 180 22 33 chr15 54968691 54969337 -46411184 + L1MB7 LINE L1 4787 5439 -981 2069 133 7 3 chr15 54969337 54969645 -46410876 + AluSx SINE Alu 1 309 -3 4057 180 22 33 chr15 54969645 54970503 -46410018 + L1MB7 LINE L1 5439 6274 -146 572 237 15 0 chr15 54970597 54970728 -46409793 + L1MB7 LINE L1 6272 6404 -16 232 311 129 0 chr15 54970804 54970936 -46409585 + L1MC/D LINE L1 5612 5760 -2048 23 0 0 0 chr15 54971049 54971072 -46409449 + AT_rich Low_complexity Low_complexity 1 23 0 220 267 0 17 chr15 54971361 54971421 -46409100 + GA-rich Low_complexity Low_complexity 3 61 0 32 43 0 0 chr15 54971502 54971548 -46408973 + AT_rich Low_complexity Low_complexity 1 46 0 724 279 60 17 chr15 54972779 54973012 -46407509 - MIR SINE MIR 0 262 20 593 335 129 49 chr15 54973071 54973515 -46407006 + L3 LINE CR1 326 832 -745 2352 66 0 60 chr15 54973515 54973833 -46406688 + AluY SINE Alu 1 299 -12 593 335 129 49 chr15 54973833 54973983 -46406538 + L3 LINE CR1 832 968 -609 2154 127 56 12 chr15 54974140 54974480 -46406041 + THE1A LTR MaLR 1 355 0 1385 73 0 0 chr15 54974480 54974658 -46405863 + HERVL-A1 LTR ERVL 1 178 -5476 * 16528 66 6 2 chr15 54974635 54977729 -46402792 + HERVL-A1 LTR ERVL 1590 5654 0 2721 90 3 0 chr15 54977729 54978083 -46402438 + MLT2A1 LTR ERVL 1 355 -89 351 0 0 0 chr15 54978215 54978254 -46402267 + (TA)n Simple_repeat Simple_repeat 1 39 0 334 228 103 53 chr15 54978276 54978453 -46402068 + MLT1H1 LTR MaLR 358 542 -13 369 62 0 0 chr15 54978454 54978502 -46402019 - MLT2A2 LTR ERVL 0 453 406 300 146 0 0 chr15 54978496 54978544 -46401977 + MLT2A2 LTR ERVL 406 453 0 * 217 269 15 0 chr15 54978544 54978611 -46401910 + (TA)n Simple_repeat Simple_repeat 1 68 0 356 83 0 0 chr15 54978611 54978659 -46401862 + MLT2A1 LTR ERVL 390 437 -7 410 193 48 105 chr15 54978759 54978794 -46401727 - MLT1H LTR MaLR -257 292 257 2495 94 0 0 chr15 54978794 54979103 -46401418 - AluSg SINE Alu -1 309 1 410 193 48 105 chr15 54979103 54979306 -46401215 - MLT1H LTR MaLR -292 257 19 388 321 48 37 chr15 54979306 54979642 -46400879 + L3 LINE CR1 1119 1575 -2 473 243 41 99 chr15 54979749 54979994 -46400527 + MIR3 SINE MIR 49 251 -11 293 259 30 82 chr15 54980306 54980441 -46400080 - MIR3 SINE MIR -12 196 69 244 310 134 7 chr15 54980600 54980742 -46399779 + MIR SINE MIR 49 208 -54 315 219 110 12 chr15 54980980 54981062 -46399459 - Charlie8 DNA MER1_type -2225 192 103 190 420 15 15 chr15 54982504 54982635 -46397886 + MIR3 SINE MIR 65 195 -13 386 195 73 41 chr15 54982656 54982779 -46397742 - L1MC4 LINE L1 0 8042 7916 354 143 0 0 chr15 54982785 54982848 -46397673 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 7514 206 58 42 chr15 54982872 54983909 -46396612 - L1PA16 LINE L1 -2 6164 5145 2570 68 0 0 chr15 54983909 54984218 -46396303 + AluY SINE Alu 1 309 -2 7514 206 58 42 chr15 54984218 54984315 -46396206 - L1PA16 LINE L1 -1021 5145 5051 2878 118 49 0 chr15 54984315 54984723 -46395798 - MSTA LTR MaLR 0 428 1 7514 206 58 42 chr15 54984723 54984895 -46395626 - L1PA16 LINE L1 -1115 5051 4883 1734 104 133 4 chr15 54984895 54985165 -46395356 - AluSg SINE Alu -5 305 1 7514 206 58 42 chr15 54985165 54987773 -46392748 - L1PA16 LINE L1 -1283 4883 3783 2120 107 24 0 chr15 54987773 54987938 -46392583 - AluSq SINE Alu -15 298 122 225 65 0 0 chr15 54987938 54987969 -46392552 + (TG)n Simple_repeat Simple_repeat 2 32 0 2120 107 24 0 chr15 54987969 54988094 -46392427 - AluSq SINE Alu -191 122 1 7514 206 58 42 chr15 54988094 54988158 -46392363 - L1PA16 LINE L1 -2383 3783 3722 24 0 0 0 chr15 54988220 54988244 -46392277 + AT_rich Low_complexity Low_complexity 1 24 0 405 0 0 0 chr15 54988353 54988398 -46392123 + (CA)n Simple_repeat Simple_repeat 2 46 0 536 233 31 0 chr15 54988398 54988527 -46391994 - L1MC4a LINE L1 -1867 5941 5809 253 339 0 28 chr15 54988609 54988718 -46391803 - MIR3 SINE MIR -10 198 93 957 259 159 5 chr15 54988735 54989106 -46391415 + LTR16A LTR ERVL 18 445 -5 277 271 14 14 chr15 54989520 54989590 -46390931 + L2 LINE L2 3233 3302 -11 381 309 29 59 chr15 54989729 54989933 -46390588 + MLT1K LTR MaLR 198 395 -193 274 261 31 77 chr15 54991281 54991476 -46389045 - LTR67 LTR ERVL -8 549 364 211 265 0 0 chr15 54991815 54991864 -46388657 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 2287 103 0 3 chr15 54992030 54992330 -46388191 - AluSg SINE Alu -11 299 1 21 0 0 0 chr15 54992330 54992351 -46388170 + AT_rich Low_complexity Low_complexity 1 21 0 318 293 138 24 chr15 54994295 54994462 -46386059 - MIR SINE MIR -51 211 26 357 228 22 0 chr15 54995503 54995595 -46384926 - MER81 DNA DNA -1 113 20 871 140 65 48 chr15 54996916 54997102 -46383419 - MER53 DNA DNA 0 189 1 863 264 51 56 chr15 54998246 54998779 -46381742 + HAL1 LINE L1 788 1317 -1190 374 216 284 0 chr15 54998780 54998896 -46381625 - MIR SINE MIR 0 262 114 285 284 34 0 chr15 54998972 54999060 -46381461 - MIR SINE MIR -151 111 21 536 306 102 15 chr15 54999942 55000148 -46380373 - MIR SINE MIR -28 234 11 1023 280 116 7 chr15 55000210 55000674 -46379847 + HAL1 LINE L1 1403 1917 -590 381 284 172 45 chr15 55000740 55001159 -46379362 + HAL1 LINE L1 2036 2507 0 324 267 92 17 chr15 55001526 55001646 -46378875 + MIR3 SINE MIR 71 199 -9 1961 132 54 0 chr15 55001785 55002081 -46378440 + AluSx SINE Alu 1 312 0 219 36 0 0 chr15 55002827 55002855 -46377666 + (CA)n Simple_repeat Simple_repeat 2 29 0 201 299 21 21 chr15 55003091 55003188 -46377333 - MIR SINE MIR 0 262 166 2456 133 37 7 chr15 55003330 55003735 -46376786 + MSTA LTR MaLR 1 417 -11 333 0 0 0 chr15 55004156 55004193 -46376328 + (TG)n Simple_repeat Simple_repeat 1 37 0 3272 118 11 36 chr15 55004451 55004767 -46375754 + MER9 LTR ERVK 1 300 -211 2474 82 0 0 chr15 55004767 55005070 -46375451 + AluY SINE Alu 1 303 -8 3272 118 11 36 chr15 55005070 55005277 -46375244 + MER9 LTR ERVK 300 511 0 228 67 0 0 chr15 55005398 55005428 -46375093 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 812 127 21 7 chr15 55006073 55006215 -46374306 + MER9 LTR ERVK 368 511 0 228 67 0 0 chr15 55006336 55006366 -46374155 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1399 141 7 44 chr15 55007190 55007460 -46373061 + L1MB8 LINE L1 5916 6175 -3 415 267 41 47 chr15 55007479 55007651 -46372870 + MIR SINE MIR 65 235 -27 2157 105 3 20 chr15 55008953 55009259 -46371262 + AluSx SINE Alu 1 301 -11 790 287 13 4 chr15 55009677 55009907 -46370614 - MIR SINE MIR -21 241 10 228 296 16 56 chr15 55010296 55010421 -46370100 - MIR SINE MIR -56 206 87 1806 41 0 0 chr15 55010625 55010843 -46369678 - L1PA4 LINE L1 0 6155 5938 453 273 86 5 chr15 55011652 55011839 -46368682 - MIR SINE MIR -12 250 49 419 308 58 17 chr15 55011877 55012049 -46368472 + MIR SINE MIR 84 262 0 1325 295 131 4 chr15 55013012 55013538 -46366983 + MLT2E LTR ERVL 1 593 -35 280 267 13 0 chr15 55013538 55013613 -46366908 + MLT2E LTR ERVL 552 627 -1 182 259 69 0 chr15 55015273 55015331 -46365190 - MER5A DNA MER1_type -99 90 29 890 177 88 70 chr15 55015930 55016145 -46364376 + MER20 DNA MER1_type 1 219 0 1202 252 101 21 chr15 55016713 55017141 -46363380 - MER74A LTR ERVL -85 473 12 2146 116 0 3 chr15 55017143 55017437 -46363084 + AluSx SINE Alu 1 293 -19 2796 210 0 0 chr15 55018360 55018931 -46361590 - L1 LINE L1 -1142 5004 4434 2178 107 10 3 chr15 55018932 55019241 -46361280 + L1PB1 LINE L1 5829 6139 -12 295 265 29 10 chr15 55019253 55019355 -46361166 + MER5A DNA MER1_type 64 167 -22 217 190 0 114 chr15 55019376 55019455 -46361066 - MIR SINE MIR -128 134 65 250 263 158 0 chr15 55019922 55019998 -46360523 - MIR3 SINE MIR -7 201 114 1144 119 149 5 chr15 55020106 55020307 -46360214 + MER30 DNA MER1_type 1 230 0 350 305 106 0 chr15 55022086 55022227 -46358294 + MIR SINE MIR 99 254 -8 1577 208 49 59 chr15 55022420 55022891 -46357630 - MLT1C LTR MaLR -1 466 1 1900 200 101 24 chr15 55023150 55023614 -46356907 + MLT1D LTR MaLR 6 505 0 1608 269 59 18 chr15 55023689 55024251 -46356270 + HAL1 LINE L1 96 680 -1827 1680 223 120 41 chr15 55024279 55024980 -46355541 + HAL1 LINE L1 843 1598 -909 1122 210 41 24 chr15 55025036 55025331 -46355190 + MLT1D LTR MaLR 206 505 0 1125 169 5 0 chr15 55026169 55026353 -46354168 + AluSg/x SINE Alu 121 305 -7 2464 210 98 23 chr15 55026359 55026815 -46353706 + L1ME1 LINE L1 5310 5849 -335 1476 189 15 109 chr15 55026815 55027218 -46353303 - MLT1A1 LTR MaLR 0 365 1 2464 210 98 23 chr15 55027218 55027495 -46353026 + L1ME1 LINE L1 5849 6104 -80 27 29 0 0 chr15 55027505 55027539 -46352982 + AT_rich Low_complexity Low_complexity 1 34 0 190 241 44 117 chr15 55027960 55027986 -46352535 + MIR SINE MIR 122 148 -114 2758 94 0 0 chr15 55027986 55028338 -46352183 + THE1A LTR MaLR 4 355 0 190 241 44 117 chr15 55028338 55028448 -46352073 + MIR SINE MIR 148 248 -14 425 272 114 0 chr15 55028897 55029011 -46351510 - MER96 DNA MER1_type? 0 175 49 436 197 128 0 chr15 55029012 55029129 -46351392 + MER96 DNA MER1_type? 25 156 -19 211 250 62 38 chr15 55029148 55029228 -46351293 + MIR SINE MIR 20 101 -161 186 292 0 0 chr15 55029334 55029382 -46351139 + L2 LINE L2 3009 3056 -257 680 253 117 36 chr15 55029467 55029748 -46350773 - MLT1I LTR MaLR 0 409 106 257 229 174 21 chr15 55029852 55029996 -46350525 + L2 LINE L2 3142 3307 -6 402 214 175 49 chr15 55030797 55031082 -46349439 + LTR16A1 LTR ERVL 41 361 -96 225 129 0 0 chr15 55031118 55031149 -46349372 + LTR16A1 LTR ERVL 427 457 0 561 225 14 86 chr15 55031152 55031252 -46349269 + MER112 DNA MER1_type 60 139 -121 207 0 0 0 chr15 55031252 55031275 -46349246 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 561 225 14 86 chr15 55031275 55031383 -46349138 + MER112 DNA MER1_type 139 253 -7 394 194 65 0 chr15 55032682 55032837 -46347684 + CT-rich Low_complexity Low_complexity 4 168 0 318 312 47 42 chr15 55033125 55033340 -46347181 + L1ME3A LINE L1 5732 5947 -223 696 251 47 19 chr15 55033468 55033752 -46346769 + L1MD2 LINE L1 5808 6111 -55 2518 49 0 0 chr15 55033764 55034049 -46346472 + AluY SINE Alu 14 298 -13 1010 175 97 5 chr15 55034061 55034278 -46346243 + L1MB3 LINE L1 5945 6181 -2 2147 149 28 50 chr15 55035786 55036183 -46344338 - MLT1B LTR MaLR -2 388 1 1854 175 7 0 chr15 55037262 55037571 -46342950 + AluJo SINE Alu 1 311 -1 787 321 41 6 chr15 55037660 55038003 -46342518 + L1MEd LINE L1 133 487 -5718 716 230 40 6 chr15 55038077 55038251 -46342270 + LTR41 LTR ERVL 6 185 -588 418 219 144 109 chr15 55038460 55038716 -46341805 + LTR41 LTR ERVL 503 767 -6 560 281 87 32 chr15 55039161 55039830 -46340691 + L1MEd LINE L1 1028 1838 -738 508 244 153 16 chr15 55039846 55040088 -46340433 + LTR41 LTR ERVL 1 275 -498 467 222 97 35 chr15 55040266 55040410 -46340111 + LTR41 LTR ERVL 511 663 -110 2062 105 0 21 chr15 55041387 55041673 -46338848 + AluSx SINE Alu 1 280 -32 180 0 0 0 chr15 55041675 55041695 -46338826 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 600 261 130 46 chr15 55041712 55042234 -46338287 + L1MEd LINE L1 1739 2304 -4092 248 246 15 0 chr15 55042238 55042303 -46338218 + L1ME3A LINE L1 6044 6109 -61 1950 120 0 21 chr15 55042574 55042858 -46337663 + AluSx SINE Alu 3 280 -32 180 0 0 0 chr15 55042860 55042880 -46337641 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 600 261 130 46 chr15 55042897 55043419 -46337102 + L1MEc LINE L1 1739 2304 -4092 374 192 16 80 chr15 55043423 55043489 -46337032 + L1ME3A LINE L1 6044 6100 -70 2024 87 0 19 chr15 55043489 55043754 -46336767 - AluSc SINE Alu -6 303 44 374 192 16 80 chr15 55043754 55043812 -46336709 + L1ME3A LINE L1 6100 6160 -10 309 166 29 101 chr15 55043857 55043996 -46336525 + L1MEc LINE L1 2984 3112 -3103 697 191 15 37 chr15 55044767 55044903 -46335618 + FLAM_A SINE Alu 1 133 0 338 245 74 42 chr15 55044961 55045131 -46335390 + MLT1J LTR MaLR 5 148 -298 271 263 72 77 chr15 55045206 55045400 -46335121 + MLT1J LTR MaLR 289 481 -30 504 32 0 0 chr15 55045424 55045486 -46335035 + (TG)n Simple_repeat Simple_repeat 2 63 0 234 194 0 0 chr15 55045494 55045561 -46334960 + (TA)n Simple_repeat Simple_repeat 2 68 0 226 250 0 15 chr15 55045588 55045656 -46334865 + L1MC4 LINE L1 6640 6706 -1336 2090 116 10 0 chr15 55045656 55045949 -46334572 - AluSq SINE Alu -17 296 1 255 61 0 0 chr15 55046663 55046696 -46333825 + (TG)n Simple_repeat Simple_repeat 1 33 0 21 36 0 0 chr15 55047310 55047338 -46333183 + AT_rich Low_complexity Low_complexity 1 28 0 471 304 38 6 chr15 55047782 55047940 -46332581 + L1ME3A LINE L1 3 165 -5954 204 308 0 0 chr15 55047940 55047992 -46332529 + GA-rich Low_complexity Low_complexity 3 54 0 1276 265 112 32 chr15 55049324 55049940 -46330581 + L1ME3A LINE L1 3679 4343 -1786 2404 277 27 9 chr15 55049990 55050733 -46329788 + L1ME3A LINE L1 5393 6148 -5 292 178 0 68 chr15 55050965 55051038 -46329483 + HAL1 LINE L1 2236 2303 -204 2209 112 0 29 chr15 55051053 55051366 -46329155 - AluY SINE Alu -7 304 1 1050 241 78 74 chr15 55051367 55051864 -46328657 - MLT1H LTR MaLR -39 510 12 255 226 103 75 chr15 55051908 55051962 -46328559 + HAL1 LINE L1 2357 2408 -99 2563 190 83 0 chr15 55051962 55052004 -46328517 - MLT2B1 LTR ERVL 0 520 483 901 100 7 0 chr15 55052004 55052144 -46328377 + (TA)n Simple_repeat Simple_repeat 1 141 0 2563 190 83 0 chr15 55052144 55052581 -46327940 - MLT2B1 LTR ERVL -37 483 1 255 226 103 75 chr15 55052581 55052672 -46327849 + HAL1 LINE L1 2408 2506 -1 216 100 0 25 chr15 55052711 55052751 -46327770 + (CAAAAA)n Simple_repeat Simple_repeat 6 44 0 191 358 68 31 chr15 55052978 55053140 -46327381 - L2 LINE L2 -22 3250 3083 * 236 290 121 8 chr15 55053107 55053231 -46327290 + L2 LINE L2 3176 3313 0 253 311 172 0 chr15 55053885 55054007 -46326514 + MIR SINE MIR 89 231 -31 235 297 0 0 chr15 55054137 55054201 -46326320 + HAL1 LINE L1 2246 2309 -198 211 236 73 0 chr15 55055038 55055093 -46325428 + MIR SINE MIR 52 110 -152 714 270 104 77 chr15 55056560 55056602 -46323919 + HAL1 LINE L1 1036 1075 -1432 1947 138 3 7 chr15 55056602 55056899 -46323622 - AluJb SINE Alu -16 296 1 714 270 104 77 chr15 55056899 55057122 -46323399 + HAL1 LINE L1 1075 1290 -1217 306 91 0 0 chr15 55057122 55057166 -46323355 + L1PA10 LINE L1 6124 6167 -1 714 270 104 77 chr15 55057166 55057655 -46322866 + HAL1 LINE L1 1290 1812 -695 229 290 0 0 chr15 55057812 55057874 -46322647 + GA-rich Low_complexity Low_complexity 4 65 0 324 257 59 89 chr15 55058216 55058453 -46322068 + HAL1 LINE L1 2245 2474 -33 218 175 0 0 chr15 55058484 55058524 -46321997 + (TG)n Simple_repeat Simple_repeat 2 41 0 286 289 138 31 chr15 55058618 55058777 -46321744 - MIR SINE MIR -50 212 37 216 0 0 0 chr15 55058798 55058822 -46321699 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 265 208 99 69 chr15 55059440 55059541 -46320980 - Charlie7 DNA MER1_type -2508 104 1 887 236 20 10 chr15 55059616 55059819 -46320702 - MIR SINE MIR 0 262 58 5735 215 60 32 chr15 55059825 55061343 -46319178 - L1MC3 LINE L1 0 7785 6225 244 109 31 141 chr15 55061344 55061408 -46319113 - MLT2B2 LTR ERVL 0 515 459 945 225 51 21 chr15 55061434 55061670 -46318851 - MLT1B LTR MaLR -141 249 7 1243 210 18 15 chr15 55061726 55061998 -46318523 - MLT2C1 LTR ERVL -124 273 1 242 279 244 65 chr15 55062120 55062321 -46318200 - MIR SINE MIR -18 244 8 2030 132 16 7 chr15 55062519 55062822 -46317699 - AluSx SINE Alu -4 308 3 1350 270 48 81 chr15 55064520 55065509 -46315012 - L1ME3A LINE L1 -8 6145 5199 590 274 74 46 chr15 55065514 55066024 -46314497 - L1MEd LINE L1 -4598 1712 1149 621 306 82 44 chr15 55066057 55066620 -46313901 - L1MEd LINE L1 -5040 1079 496 424 273 85 59 chr15 55066783 55067054 -46313467 - L1MEd LINE L1 -5838 281 4 682 267 159 0 chr15 55067328 55067523 -46312998 - MIR SINE MIR -34 228 3 289 184 40 40 chr15 55067670 55067746 -46312775 - MER5B DNA MER1_type -78 100 25 208 260 52 26 chr15 55067690 55067767 -46312754 + MER5A DNA MER1_type 109 187 -2 * 262 182 34 125 chr15 55067894 55067982 -46312539 + MIR SINE MIR 68 143 -65 2376 117 15 63 chr15 55069161 55069555 -46310966 - THE1C LTR MaLR 0 375 1 462 308 65 22 chr15 55069666 55069851 -46310670 - MIR SINE MIR -50 212 20 291 253 155 90 chr15 55071543 55071910 -46308611 - MLT1J LTR MaLR -12 499 109 408 316 75 27 chr15 55072658 55072845 -46307676 + MIR3 SINE MIR 1 196 -12 204 236 174 38 chr15 55073397 55073549 -46306972 + MIR SINE MIR 10 189 -73 2650 13 40 0 chr15 55073598 55073897 -46306624 - AluYa5 SINE Alu 0 311 1 25 31 0 0 chr15 55073903 55073935 -46306586 + AT_rich Low_complexity Low_complexity 1 32 0 314 231 58 19 chr15 55074168 55074272 -46306249 + L1MA10 LINE L1 6225 6332 -2 1052 262 180 28 chr15 55074405 55074871 -46305650 + MER34 LTR ERV1 6 542 0 265 328 157 0 chr15 55074927 55075061 -46305460 - MIR SINE MIR -10 252 98 451 182 169 26 chr15 55075074 55075166 -46305355 - MER5B DNA MER1_type 0 178 100 2604 40 0 0 chr15 55075166 55075464 -46305057 - AluY SINE Alu -13 298 1 451 182 169 26 chr15 55075464 55075525 -46304996 - MER5B DNA MER1_type -78 100 3 465 287 66 89 chr15 55076554 55076812 -46303709 - L2 LINE L2 -1 3271 3020 249 33 0 0 chr15 55076894 55076924 -46303597 + (GA)n Simple_repeat Simple_repeat 2 31 0 2221 150 31 0 chr15 55077817 55078170 -46302351 + MER47A DNA MER2_type 3 366 0 386 265 49 81 chr15 55078520 55078705 -46301816 + MIR3 SINE MIR 1 179 -29 1582 186 27 72 chr15 55079128 55079531 -46300990 + MLT1B LTR MaLR 1 385 -5 1676 244 73 23 chr15 55079556 55080073 -46300448 - REP3 LTR ERV -18 544 2 2149 121 0 0 chr15 55080269 55080559 -46299962 + AluSx SINE Alu 1 290 -22 2571 62 0 10 chr15 55080564 55080872 -46299649 + AluY SINE Alu 1 305 -6 711 231 123 15 chr15 55080927 55081195 -46299326 + L1ME2 LINE L1 5858 6154 -10 818 253 137 22 chr15 55081302 55081862 -46298659 - L1ME4a LINE L1 -198 5923 5287 872 179 42 147 chr15 55082285 55082598 -46297923 + MER33 DNA MER1_type 39 354 -9 538 267 44 32 chr15 55082673 55082890 -46297631 - MIR SINE MIR -20 242 27 322 164 0 0 chr15 55082891 55082946 -46297575 + MIR SINE MIR 93 147 -61 1547 229 53 17 chr15 55082946 55083361 -46297160 - LTR16A LTR ERVL 0 450 21 2436 160 16 40 chr15 55084174 55084388 -46296133 + Tigger2a DNA MER2_type 1 200 -2508 12290 147 20 16 chr15 55084388 55087216 -46293305 - L1PA11 LINE L1 -8 6166 3328 2436 160 16 40 chr15 55087216 55087446 -46293075 + Tigger2a DNA MER2_type 200 434 0 1583 218 58 12 chr15 55088238 55088716 -46291805 + L1ME1 LINE L1 4213 4737 -1409 563 218 68 20 chr15 55088714 55088861 -46291660 + L1MA10 LINE L1 6179 6332 -2 * 319 279 14 95 chr15 55089184 55089280 -46291241 - L2 LINE L2 -1 3312 3230 783 211 79 49 chr15 55089280 55089545 -46290976 + ORSL DNA AcHobo 1 273 -2 319 279 14 95 chr15 55089545 55089595 -46290926 - L2 LINE L2 -83 3230 3178 2174 225 37 77 chr15 55089809 55090696 -46289825 + L1ME1 LINE L1 5175 6001 -165 * 4112 149 18 1 chr15 55090152 55090836 -46289685 + L1MB2 LINE L1 5454 6148 -23 523 329 78 76 chr15 55090846 55091342 -46289179 - L2 LINE L2 -561 2753 2254 1797 86 4 13 chr15 55091342 55091574 -46288947 + MER30 DNA MER1_type 1 230 0 523 329 78 76 chr15 55091574 55091746 -46288775 - L2 LINE L2 -1060 2254 2084 882 199 61 0 chr15 55091753 55091949 -46288572 - L1 LINE L1 -820 5326 5119 14802 213 26 19 chr15 55092025 55096813 -46283708 - L1PA16 LINE L1 0 6882 1992 1249 198 0 0 chr15 55096867 55097079 -46283442 - AluJo SINE Alu -14 298 87 4354 185 30 7 chr15 55097079 55097980 -46282541 - L1 LINE L1 -1013 5133 4212 5702 157 15 3 chr15 55097980 55098435 -46282086 + L1MA5 LINE L1 5329 5777 -523 477 0 0 0 chr15 55098435 55098488 -46282033 + (CA)n Simple_repeat Simple_repeat 2 54 0 5702 157 15 3 chr15 55098488 55098983 -46281538 + L1MA5 LINE L1 5777 6290 -10 186 43 0 0 chr15 55098991 55099014 -46281507 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 304 271 0 12 chr15 55099016 55099101 -46281420 - MIR SINE MIR -123 139 56 339 222 51 91 chr15 55099164 55099340 -46281181 + MIR SINE MIR 33 201 -61 485 222 123 37 chr15 55100755 55100917 -46279604 - MIR SINE MIR -30 232 57 811 243 11 11 chr15 55101924 55102101 -46278420 - MIR3 SINE MIR -31 177 1 239 325 43 26 chr15 55102520 55102637 -46277884 - L3 LINE CR1 -7 1570 1452 684 298 137 12 chr15 55103169 55103511 -46277010 - L2 LINE L2 -1 3312 2928 236 267 310 0 chr15 55103714 55103830 -46276691 - MIR SINE MIR -54 208 57 1131 280 72 10 chr15 55104036 55104440 -46276081 + LTR16B LTR ERVL 36 464 0 4522 135 20 62 chr15 55104908 55105694 -46274827 + Tigger1 DNA MER2_type 1 753 -1665 1904 135 10 23 chr15 55105673 55105977 -46274544 + Tigger1 DNA MER2_type 2119 2418 0 * 1017 128 0 0 chr15 55106003 55106136 -46274385 + FLAM_C SINE Alu 1 133 0 22 0 0 0 chr15 55106136 55106158 -46274363 + AT_rich Low_complexity Low_complexity 1 22 0 710 147 149 18 chr15 55106209 55106412 -46274109 - MER33 DNA MER1_type -92 232 1 21 36 0 0 chr15 55106582 55106610 -46273911 + AT_rich Low_complexity Low_complexity 1 28 0 280 309 111 31 chr15 55106903 55107065 -46273456 - MIR SINE MIR -12 250 76 279 290 97 0 chr15 55107119 55107243 -46273278 + L1ME LINE L1 5528 5663 -458 337 120 0 0 chr15 55107245 55107295 -46273226 + MER2 DNA MER2_type 113 162 -183 337 311 38 0 chr15 55107354 55107460 -46273061 - L2 LINE L2 -1 3312 3203 2547 183 39 50 chr15 55107484 55107885 -46272636 - Charlie5 DNA MER1_type -7 2617 2224 1822 161 20 10 chr15 55107885 55108183 -46272338 - AluSx SINE Alu -9 303 3 2547 183 39 50 chr15 55108183 55108448 -46272073 - Charlie5 DNA MER1_type -400 2224 1958 972 167 6 17 chr15 55108447 55108627 -46271894 + MER2 DNA MER2_type 33 210 -135 * 381 113 0 0 chr15 55108783 55108836 -46271685 - L1MB1 LINE L1 -1 6167 6115 838 192 0 62 chr15 55108854 55109031 -46271490 - AluJo SINE Alu -30 282 117 233 146 55 0 chr15 55109043 55109098 -46271423 + T-rich Low_complexity Low_complexity 3 60 0 733 202 23 0 chr15 55109100 55109229 -46271292 - AluJo SINE Alu -179 133 2 7620 164 55 40 chr15 55109243 55109901 -46270620 - Charlie5 DNA MER1_type -672 1952 1306 2195 78 0 0 chr15 55109901 55110171 -46270350 + L1PA6 LINE L1 5885 6154 0 7620 164 55 40 chr15 55110171 55111366 -46269155 - Charlie5 DNA MER1_type -1318 1306 25 243 0 0 0 chr15 55111776 55111803 -46268718 + (CA)n Simple_repeat Simple_repeat 2 28 0 695 246 174 0 chr15 55112063 55112258 -46268263 + MIR SINE MIR 13 241 -21 182 233 47 0 chr15 55112391 55112434 -46268087 + L2 LINE L2 3228 3272 0 234 266 79 72 chr15 55113407 55113546 -46266975 + L2 LINE L2 3171 3310 -3 1803 223 122 66 chr15 55114174 55114869 -46265652 + MER50 LTR ERV1 1 734 0 292 135 77 0 chr15 55115063 55115115 -46265406 - MLT2B3 LTR ERVL 0 520 465 321 135 0 0 chr15 55115115 55115167 -46265354 + (TG)n Simple_repeat Simple_repeat 2 53 0 2306 147 13 37 chr15 55115179 55115635 -46264886 - MLT2B3 LTR ERVL -46 469 1 4872 39 0 0 chr15 55115927 55116511 -46264010 - L1PA5 LINE L1 -840 5306 4723 7656 33 5 0 chr15 55116511 55117365 -46263156 + L1PA5 LINE L1 5297 6154 0 2229 120 0 0 chr15 55118388 55118696 -46261825 - AluSg SINE Alu 0 310 3 2174 104 16 7 chr15 55118704 55119013 -46261508 - AluSx SINE Alu 0 312 1 378 284 98 44 chr15 55119320 55119545 -46260976 - L1ME LINE L1 -393 5728 5492 1966 139 0 0 chr15 55119728 55120008 -46260513 + AluJb SINE Alu 24 303 -9 317 300 45 24 chr15 55120050 55120281 -46260240 + LTR16A LTR ERVL 25 286 -171 299 258 0 0 chr15 55120313 55120379 -46260142 + LTR16A LTR ERVL 375 440 -10 245 186 207 43 chr15 55120627 55120767 -46259754 - L1ME LINE L1 -2330 5478 5316 415 314 78 4 chr15 55121035 55121280 -46259241 - L1ME4a LINE L1 -207 5914 5652 3331 136 41 9 chr15 55121289 55121820 -46258701 - MER41B LTR ERV1 -87 548 1 1668 80 14 0 chr15 55121820 55122033 -46258488 - MER41B-int LTR ERV1 -2 5944 5729 575 139 58 0 chr15 55122029 55122115 -46258406 - MER41B-int LTR ERV1 -5855 91 1 * 1079 73 26 0 chr15 55122115 55122266 -46258255 - MER41B LTR ERV1 0 635 481 315 313 52 9 chr15 55123145 55123260 -46257261 + MIR SINE MIR 26 145 -117 1605 149 87 7 chr15 55123591 55123866 -46256655 + AluSx SINE Alu 2 298 -14 1966 143 10 0 chr15 55125810 55126110 -46254411 + AluSx SINE Alu 3 305 -7 338 301 103 29 chr15 55127988 55128124 -46252397 + MER5A DNA MER1_type 7 152 -37 284 281 73 0 chr15 55128488 55128570 -46251951 - L2 LINE L2 -1 3271 3184 378 0 0 0 chr15 55129004 55129046 -46251475 + (CA)n Simple_repeat Simple_repeat 2 43 0 547 276 70 13 chr15 55129304 55129532 -46250989 + MIR SINE MIR 19 259 -3 471 258 38 15 chr15 55129579 55129711 -46250810 - L2 LINE L2 0 3313 3179 2152 189 60 25 chr15 55129717 55130166 -46250355 - MLT1C LTR MaLR 0 467 3 2083 161 19 16 chr15 55130938 55131305 -46249216 + L1MC1 LINE L1 5966 6333 0 1212 196 60 105 chr15 55131420 55131802 -46248719 - MLT1A1 LTR MaLR 0 365 1 32522 107 11 59 chr15 55131875 55138333 -46242188 + L1PA7 LINE L1 12 6153 -1 186 103 0 0 chr15 55138880 55138909 -46241612 + (TC)n Simple_repeat Simple_repeat 1 29 0 303 93 0 0 chr15 55138909 55138952 -46241569 + (TG)n Simple_repeat Simple_repeat 2 44 0 249 342 52 52 chr15 55139120 55139275 -46241246 + MIR3 SINE MIR 3 157 -51 1354 203 86 92 chr15 55139564 55140032 -46240489 - MER4C LTR ERV1 0 465 1 694 270 5 25 chr15 55140039 55140239 -46240282 - MER4C-int LTR ERV1 -8 6590 6395 273 245 35 77 chr15 55140245 55140388 -46240133 - MER4C-int LTR ERV1 -171 6427 6291 325 167 26 13 chr15 55140408 55140486 -46240035 + (TATATG)n Simple_repeat Simple_repeat 6 84 0 3710 96 69 22 chr15 55140495 55141077 -46239444 - MER4C-int LTR ERV1 -487 5844 5236 900 99 0 8 chr15 55141077 55141198 -46239323 + AluSg/x SINE Alu 183 302 -10 8275 149 35 45 chr15 55141198 55143044 -46237477 - MER4C-int LTR ERV1 -923 5670 3192 967 167 90 162 chr15 55143130 55143519 -46237002 - MER4C LTR ERV1 -103 362 2 4169 119 49 10 chr15 55144260 55144888 -46235633 - MER39B LTR ERV1 0 653 1 2125 157 52 11 chr15 55145491 55145860 -46234661 + MLT1B LTR MaLR 7 390 0 2719 148 33 86 chr15 55145895 55146497 -46234024 - MER34C LTR ERV1 0 585 16 1834 189 30 11 chr15 55146512 55146878 -46233643 + MLT1D LTR MaLR 133 505 0 241 247 243 95 chr15 55146907 55147060 -46233461 + L2 LINE L2 3033 3162 -151 2181 117 0 7 chr15 55147060 55147369 -46233152 + AluSx SINE Alu 6 312 0 241 247 243 95 chr15 55147369 55147458 -46233063 + L2 LINE L2 3162 3311 -2 299 114 0 0 chr15 55147650 55147694 -46232827 - MLT2B1 LTR ERVL 0 520 477 674 55 11 0 chr15 55147694 55147785 -46232736 + (TAGA)n Simple_repeat Simple_repeat 1 92 0 303 260 0 14 chr15 55147784 55147857 -46232664 - MER7A DNA MER2_type -1 335 264 2860 135 103 10 chr15 55147857 55148354 -46232167 + LTR36 LTR ERV1 1 543 -68 1033 188 138 0 chr15 55148354 55148594 -46231927 + L1 LINE L1 4267 4539 -1607 1858 128 4 0 chr15 55148592 55148866 -46231655 - L1PA13 LINE L1 -3 6160 5886 2061 126 0 36 chr15 55149226 55149535 -46230986 - AluSx SINE Alu -14 298 1 1900 218 35 48 chr15 55149837 55150318 -46230203 + MLT2B1 LTR ERVL 1 475 -45 1595 161 47 4 chr15 55150320 55150587 -46229934 + MER7A DNA MER2_type 3 279 -67 601 154 11 0 chr15 55150587 55150678 -46229843 - LTR36 LTR ERV1 0 611 520 1272 82 6 6 chr15 55150678 55150848 -46229673 + L1PA12 LINE L1 5673 5842 -326 1075 194 128 53 chr15 55151164 55151484 -46229037 + MER2 DNA MER2_type 1 344 0 719 313 68 27 chr15 55151588 55152070 -46228451 - L1MC/D LINE L1 -1997 5811 5310 2106 110 0 58 chr15 55152212 55152539 -46227982 - AluSg SINE Alu -2 308 1 410 322 59 7 chr15 55153265 55153535 -46226986 - L1MC/D LINE L1 -2758 3388 3105 3037 134 54 33 chr15 55153714 55154230 -46226291 - MER1A DNA MER1_type 0 527 1 719 256 71 27 chr15 55154318 55154654 -46225867 - L1MC4 LINE L1 -4 8038 7688 285 232 50 0 chr15 55154654 55154753 -46225768 + (TA)n Simple_repeat Simple_repeat 1 104 0 398 190 140 0 chr15 55155174 55155274 -46225247 - MIR SINE MIR -76 186 73 2546 53 0 7 chr15 55156012 55156314 -46224207 + AluY SINE Alu 1 300 -11 348 232 22 80 chr15 55156372 55156510 -46224011 + MIR SINE MIR 63 192 -70 180 0 0 0 chr15 55157528 55157548 -46222973 + (T)n Simple_repeat Simple_repeat 1 20 0 304 205 60 24 chr15 55157568 55157651 -46222870 - MER5A DNA MER1_type -31 158 73 2235 133 0 0 chr15 55157662 55157971 -46222550 - AluSx SINE Alu -3 309 1 412 251 112 27 chr15 55158039 55158191 -46222330 + MIR SINE MIR 38 199 -63 2142 132 0 0 chr15 55158423 55158719 -46221802 - AluSx SINE Alu -12 300 5 21 57 0 0 chr15 55158870 55158905 -46221616 + AT_rich Low_complexity Low_complexity 1 35 0 4246 160 11 16 chr15 55160939 55161687 -46218834 + MER49 LTR ERV1 180 923 0 251 218 18 18 chr15 55161889 55161944 -46218577 + MLT1E2 LTR MaLR 1 55 -599 2089 223 73 5 chr15 55161981 55162420 -46218101 + MLT1E2 LTR MaLR 156 624 -2 687 299 113 0 chr15 55162701 55162932 -46217589 + MLT1L LTR MaLR 359 615 0 238 255 10 49 chr15 55163252 55163354 -46217167 + MIR SINE MIR 105 202 -60 264 190 0 35 chr15 55163396 55163454 -46217067 + L2 LINE L2 3250 3305 -8 377 381 46 0 chr15 55164161 55164379 -46216142 + MIR SINE MIR 25 252 -10 299 368 14 23 chr15 55164556 55164776 -46215745 - L2 LINE L2 -547 2767 2550 1898 176 27 32 chr15 55166451 55166472 -46214049 - MLT1A2 LTR MaLR 0 374 354 2377 143 87 2 chr15 55166472 55166865 -46213656 + MSTB LTR MaLR 1 426 0 1898 176 27 32 chr15 55166865 55167218 -46213303 - MLT1A2 LTR MaLR -20 354 2 348 291 90 0 chr15 55167541 55167675 -46212846 - L3 LINE CR1 -1 1576 1431 237 311 93 13 chr15 55167807 55167958 -46212563 + MIR SINE MIR 57 219 -43 209 336 97 35 chr15 55168182 55168295 -46212226 + L2 LINE L2 3145 3264 -8 749 154 73 0 chr15 55168579 55168702 -46211819 - AluSq/x SINE Alu -179 133 2 242 291 47 0 chr15 55169307 55169393 -46211128 + L2 LINE L2 3186 3275 -38 1303 264 63 34 chr15 55169684 55170131 -46210390 - LTR40c LTR ERVL -5 460 1 1995 138 53 60 chr15 55170447 55170845 -46209676 + MLT2C1 LTR ERVL 1 395 -2 2107 77 0 0 chr15 55171805 55172065 -46208456 - AluY SINE Alu -21 290 31 462 245 99 19 chr15 55172279 55172508 -46208013 + MIR SINE MIR 8 259 -3 1106 185 19 5 chr15 55173745 55173961 -46206560 + MER20 DNA MER1_type 1 219 0 226 208 0 0 chr15 55174407 55174455 -46206066 - MIR SINE MIR -111 151 104 198 259 52 17 chr15 55174669 55174727 -46205794 + MIR SINE MIR 40 99 -163 3658 111 52 32 chr15 55174945 55175565 -46204956 - MER39B LTR ERV1 -2 651 20 312 83 0 0 chr15 55175787 55175835 -46204686 + (TG)n Simple_repeat Simple_repeat 2 49 0 717 272 144 7 chr15 55176062 55176367 -46204154 + L3 LINE CR1 1149 1495 -82 252 205 241 18 chr15 55176493 55176605 -46203916 + MER117 DNA MER1_type 1 137 -60 375 264 208 0 chr15 55177998 55178142 -46202379 + MER5A DNA MER1_type 9 182 -7 404 237 167 32 chr15 55178151 55178307 -46202214 - MIR SINE MIR -57 205 29 190 278 200 17 chr15 55179168 55179283 -46201238 + MIR3 SINE MIR 58 193 -15 242 200 17 33 chr15 55180348 55180408 -46200113 + MLT1K LTR MaLR 522 580 -8 356 295 77 0 chr15 55181166 55181320 -46199201 - MIR SINE MIR -80 182 17 778 179 17 29 chr15 55181320 55181493 -46199028 + MER5A DNA MER1_type 1 171 -18 509 240 187 0 chr15 55181507 55181657 -46198864 + MER5A DNA MER1_type 9 186 -3 2327 94 0 10 chr15 55181657 55181955 -46198566 + AluSg SINE Alu 1 295 -15 1064 226 48 96 chr15 55182049 55182574 -46197947 - MER34 LTR ERV1 -38 557 1 21 0 0 0 chr15 55185788 55185809 -46194712 + AT_rich Low_complexity Low_complexity 1 21 0 2096 153 21 44 chr15 55186046 55186433 -46194088 + L1PA16 LINE L1 5769 6146 -20 698 264 96 16 chr15 55186455 55186895 -46193626 + L1ME4a LINE L1 5643 6117 -4 2354 98 0 16 chr15 55187455 55187772 -46192749 - AluSp SINE Alu -1 312 1 408 264 9 0 chr15 55187812 55187918 -46192603 + L2 LINE L2 2088 2194 -1120 2312 109 0 0 chr15 55188548 55188859 -46191662 - AluSx SINE Alu -1 311 1 1413 163 4 40 chr15 55190075 55190327 -46190194 - AluJo SINE Alu -4 308 66 330 329 15 0 chr15 55190581 55190718 -46189803 - MIR SINE MIR -30 232 94 1417 166 78 71 chr15 55190901 55191148 -46189373 + LTR37A LTR ERV1 1 254 -172 2552 53 3 0 chr15 55191148 55191451 -46189070 - AluY SINE Alu -7 304 1 1417 166 78 71 chr15 55191451 55191624 -46188897 + LTR37A LTR ERV1 254 424 -2 2043 158 23 27 chr15 55192033 55192551 -46187970 + MLT2A2 LTR ERVL 1 409 -44 370 262 141 7 chr15 55192675 55192824 -46187697 + MIR SINE MIR 24 192 -70 362 200 127 5 chr15 55193813 55193951 -46186570 + MIR SINE MIR 41 192 -62 315 235 24 0 chr15 55194009 55194094 -46186427 - MIR SINE MIR -114 148 62 201 319 111 15 chr15 55194582 55194717 -46185804 + MIR SINE MIR 12 159 -103 1982 127 3 47 chr15 55195168 55195490 -46185031 + AluSx SINE Alu 1 308 -4 321 256 38 62 chr15 55195994 55196154 -46184367 - MER5A DNA MER1_type 0 189 34 398 276 109 43 chr15 55196316 55196526 -46183995 - MIR SINE MIR -17 245 22 1928 148 0 17 chr15 55196526 55196824 -46183697 - AluJo SINE Alu -11 301 9 589 116 12 0 chr15 55197540 55197626 -46182895 + FLAM_C SINE Alu 30 116 -27 287 25 25 0 chr15 55197626 55197666 -46182855 + (TAAAA)n Simple_repeat Simple_repeat 1 41 0 183 255 20 0 chr15 55197801 55197852 -46182669 - MIR SINE MIR -111 151 100 2376 99 0 0 chr15 55198564 55198868 -46181653 + AluSg SINE Alu 5 308 -2 1844 239 176 26 chr15 55199027 55199770 -46180751 + L2 LINE L2 2284 3183 -130 2386 77 3 0 chr15 55199770 55200068 -46180453 - AluSg SINE Alu -11 299 1 1844 239 176 26 chr15 55200068 55200222 -46180299 + L2 LINE L2 3183 3312 -1 757 217 29 10 chr15 55202374 55202581 -46177940 - L1ME3A LINE L1 -213 5957 5747 1280 132 18 53 chr15 55202972 55203199 -46177322 + MER20 DNA MER1_type 1 219 0 276 238 79 56 chr15 55203384 55203510 -46177011 - MIR SINE MIR -113 149 21 1536 166 71 25 chr15 55203953 55204321 -46176200 - Charlie1 DNA MER1_type -34 2727 2343 2893 219 54 35 chr15 55204496 55204593 -46175928 + MER97a DNA MER1_type? 45 139 -755 2172 107 3 3 chr15 55204593 55204884 -46175637 + AluSq SINE Alu 1 291 -22 2893 219 54 35 chr15 55204884 55205620 -46174901 + MER97a DNA MER1_type? 139 894 0 210 213 0 0 chr15 55205725 55205772 -46174749 - L2 LINE L2 -224 3048 3002 596 228 71 49 chr15 55208356 55208403 -46172118 - MER5A DNA MER1_type 0 189 145 2324 105 0 0 chr15 55208403 55208707 -46171814 - AluSg SINE Alu -6 304 1 596 228 71 49 chr15 55208707 55208843 -46171678 - MER5A DNA MER1_type -44 145 2 180 250 0 58 chr15 55209693 55209745 -46170776 - L2 LINE L2 -257 3056 3008 216 275 0 75 chr15 55210405 55210485 -46170036 - MIR SINE MIR -59 203 130 297 193 73 46 chr15 55210580 55210689 -46169832 - MER90 LTR ERV1 -147 467 356 21 36 0 0 chr15 55210704 55210732 -46169789 + AT_rich Low_complexity Low_complexity 1 28 0 445 265 66 0 chr15 55211571 55211707 -46168814 - MIR SINE MIR -44 218 74 2007 127 17 0 chr15 55211885 55212177 -46168344 - AluSx SINE Alu -15 297 1 1226 173 107 69 chr15 55212649 55213070 -46167451 - LTR7 LTR ERV1 -13 437 1 2165 139 35 11 chr15 55213408 55213783 -46166738 - MLT1B LTR MaLR -6 384 1 259 215 15 15 chr15 55213785 55213850 -46166671 - L2 LINE L2 -11 3261 3197 448 362 15 10 chr15 55214613 55214809 -46165712 + MIR SINE MIR 20 216 -46 373 228 114 44 chr15 55214914 55215072 -46165449 - L1MC4 LINE L1 0 8042 7874 1024 118 0 0 chr15 55215170 55215305 -46165216 - AluSg/x SINE Alu -15 295 161 424 228 24 8 chr15 55215319 55215446 -46165075 - L1MC4 LINE L1 -225 7817 7689 432 303 56 0 chr15 55215638 55215780 -46164741 + L2 LINE L2 3123 3272 0 2272 113 3 6 chr15 55215830 55216141 -46164380 + AluSx SINE Alu 1 310 -2 533 265 142 12 chr15 55216606 55216768 -46163753 - MER5A DNA MER1_type 0 189 7 234 222 19 19 chr15 55217122 55217176 -46163345 + MIR SINE MIR 61 114 -94 180 340 148 43 chr15 55217372 55217581 -46162940 - L2 LINE L2 -1 3271 3041 454 298 50 0 chr15 55217584 55217745 -46162776 - MIR SINE MIR -19 243 75 1884 129 44 14 chr15 55218514 55218808 -46161713 - AluSx SINE Alu -9 303 1 964 187 16 16 chr15 55219190 55219377 -46161144 - MER5A DNA MER1_type 0 189 3 248 314 99 0 chr15 55220238 55220359 -46160162 - MLT1K LTR MaLR 0 588 456 256 295 107 33 chr15 55220517 55220639 -46159882 - MLT1K LTR MaLR -360 228 98 1008 195 5 11 chr15 55221106 55221291 -46159230 + MER5A DNA MER1_type 1 184 -5 207 100 0 0 chr15 55221678 55221708 -46158813 + (GGGTG)n Simple_repeat Simple_repeat 4 33 0 1500 140 133 7 chr15 55222588 55222859 -46157662 + AluJb SINE Alu 6 310 -2 447 244 175 6 chr15 55222944 55223104 -46157417 - MIR SINE MIR -55 207 21 2019 195 73 26 chr15 55223797 55224160 -46156361 - MER63C DNA MER1_type -160 900 505 1088 206 28 5 chr15 55224160 55224378 -46156143 - MER58A DNA MER1_type 0 224 2 2019 195 73 26 chr15 55224378 55224521 -46156000 - MER63C DNA MER1_type -555 505 370 1247 230 84 12 chr15 55274523 55274867 -46105654 - MER63C DNA MER1_type -561 369 1 344 244 122 56 chr15 55275233 55275413 -46105108 + L1ME4a LINE L1 5930 6121 0 345 331 46 0 chr15 55275829 55275959 -46104562 - MIR3 SINE MIR -12 196 61 2405 90 0 0 chr15 55276080 55276379 -46104142 - AluSp SINE Alu -13 300 2 209 209 70 0 chr15 55276570 55276613 -46103908 + L2 LINE L2 3020 3065 -207 422 298 16 37 chr15 55279448 55279639 -46100882 - MIR SINE MIR -27 235 49 241 315 131 8 chr15 55279743 55279873 -46100648 + MIR3 SINE MIR 15 160 -48 629 272 127 9 chr15 55280166 55280379 -46100142 - MIR SINE MIR 0 262 25 1992 120 0 42 chr15 55280380 55280688 -46099833 - AluSx SINE Alu -17 295 1 231 331 143 30 chr15 55281134 55281267 -46099254 + L2 LINE L2 3121 3268 -4 2171 132 0 0 chr15 55283660 55283947 -46096574 + AluSx SINE Alu 1 287 -25 360 259 9 46 chr15 55285372 55285480 -46095041 + MIR3 SINE MIR 74 177 -31 384 338 191 0 chr15 55286855 55287065 -46093456 + MIR SINE MIR 9 258 -4 273 313 54 34 chr15 55287089 55287236 -46093285 - MIR3 SINE MIR -43 165 16 1121 129 51 6 chr15 55287277 55287455 -46093066 + MER5A DNA MER1_type 1 186 -3 324 209 116 12 chr15 55287620 55287706 -46092815 + MER5B DNA MER1_type 1 95 -83 369 0 0 0 chr15 55288070 55288111 -46092410 + (TG)n Simple_repeat Simple_repeat 2 42 0 802 211 7 0 chr15 55288120 55288262 -46092259 - FRAM SINE Alu -30 146 4 1900 181 3 0 chr15 55288901 55289199 -46091322 - AluJb SINE Alu -13 299 1 39 0 0 0 chr15 55289383 55289422 -46091099 + AT_rich Low_complexity Low_complexity 1 39 0 1720 112 4 12 chr15 55289565 55289815 -46090706 - AluY SINE Alu -10 301 54 2209 124 0 34 chr15 55290092 55290415 -46090106 - AluSx SINE Alu 0 312 1 2316 119 0 3 chr15 55290955 55291265 -46089256 + AluSx SINE Alu 1 309 -3 1959 145 0 7 chr15 55291273 55291562 -46088959 + AluSx SINE Alu 14 300 -12 40 67 0 0 chr15 55291612 55291687 -46088834 + AT_rich Low_complexity Low_complexity 1 75 0 457 214 179 46 chr15 55291709 55291882 -46088639 - MIR SINE MIR -30 232 37 366 324 18 0 chr15 55292668 55292779 -46087742 - MIR SINE MIR -65 143 31 1658 140 45 21 chr15 55293214 55293500 -46087021 + AluJo SINE Alu 12 304 -8 214 218 103 0 chr15 55293503 55293581 -46086940 - MIR SINE MIR -54 208 123 265 310 143 40 chr15 55294050 55294450 -46086071 + L2 LINE L2 2454 2894 -420 203 273 36 0 chr15 55294809 55294864 -46085657 - MIR SINE MIR 0 262 206 276 305 0 0 chr15 55294870 55294952 -46085569 + MIR SINE MIR 173 254 -8 493 349 38 9 chr15 55294969 55295181 -46085340 - MIR SINE MIR -12 250 33 264 353 92 13 chr15 55295605 55295775 -46084746 + MIR SINE MIR 2 184 -63 666 275 39 43 chr15 55297140 55297198 -46083323 - MIR SINE MIR 0 262 205 2027 161 0 3 chr15 55297198 55297508 -46083013 - AluSx SINE Alu -3 309 1 666 275 39 43 chr15 55297508 55297682 -46082839 - MIR SINE MIR -57 205 31 298 247 229 7 chr15 55298835 55298995 -46081526 + MIR SINE MIR 60 256 -6 221 413 18 0 chr15 55299066 55299175 -46081346 + L2 LINE L2 2940 3050 -222 198 0 0 0 chr15 55299239 55299261 -46081260 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 2128 138 0 7 chr15 55299268 55299565 -46080956 - AluSx SINE Alu -17 295 1 1435 114 50 0 chr15 55299583 55299802 -46080719 - MER30 DNA MER1_type 0 230 1 768 265 62 80 chr15 55300151 55300491 -46080030 + L1MC4a LINE L1 5506 5838 -1970 1924 138 30 10 chr15 55300491 55300795 -46079726 + AluSx SINE Alu 1 310 -2 768 265 62 80 chr15 55300795 55300891 -46079630 + L1MC4a LINE L1 5838 5934 -1874 221 225 150 12 chr15 55301291 55301371 -46079150 + L2 LINE L2 1705 1795 -1519 305 243 87 10 chr15 55301435 55301538 -46078983 + MIR SINE MIR 98 208 -54 244 242 77 33 chr15 55301726 55301817 -46078704 - LTR39 LTR ERV1 -103 680 586 231 304 0 0 chr15 55303418 55303474 -46077047 - L2 LINE L2 -1 3312 3257 * 902 212 20 78 chr15 55303444 55303699 -46076822 - MIR SINE MIR -21 241 2 339 322 117 37 chr15 55303792 55304342 -46076179 - L2 LINE L2 -236 3036 2443 202 330 85 0 chr15 55304451 55304569 -46075952 + L2 LINE L2 2911 3038 -234 245 300 100 0 chr15 55304599 55304679 -46075842 - MIR SINE MIR -69 193 106 365 286 18 0 chr15 55305246 55305358 -46075163 + MER81 DNA DNA 1 114 0 333 241 76 13 chr15 55305483 55305562 -46074959 + L2 LINE L2 3186 3269 -3 583 312 29 19 chr15 55306178 55306383 -46074138 + MIR SINE MIR 56 262 0 455 293 11 69 chr15 55306829 55306958 -46073563 + MIR3 SINE MIR 21 139 -69 1559 171 25 0 chr15 55306958 55307244 -46073277 + AluSq SINE Alu 1 293 -20 455 293 11 69 chr15 55307244 55307288 -46073233 + MIR3 SINE MIR 139 184 -24 270 297 16 0 chr15 55307362 55307426 -46073095 - L2 LINE L2 -3 3269 3205 198 310 69 23 chr15 55307885 55307972 -46072549 + MIR SINE MIR 102 192 -70 2569 186 100 61 chr15 55308248 55308948 -46071573 - LTR8A LTR ERV1 0 727 1 323 308 77 33 chr15 55308985 55309167 -46071354 - MIR SINE MIR -21 241 52 542 313 56 13 chr15 55310238 55310471 -46070050 + MIR SINE MIR 2 244 -18 396 290 161 5 chr15 55311377 55311563 -46068958 - MIR SINE MIR -2 260 46 248 242 57 6 chr15 55312440 55312597 -46067924 + (TA)n Simple_repeat Simple_repeat 2 166 0 272 250 40 7 chr15 55312616 55312768 -46067753 + (TA)n Simple_repeat Simple_repeat 2 158 0 924 210 113 68 chr15 55312986 55313337 -46067184 - MLT1F LTR MaLR -183 384 1 194 295 49 16 chr15 55313394 55313455 -46067066 + MIR SINE MIR 89 151 -111 395 234 32 48 chr15 55314088 55314212 -46066309 + MIR3 SINE MIR 5 126 -82 867 226 116 10 chr15 55314480 55314679 -46065842 - MIR SINE MIR -4 258 39 1121 172 37 28 chr15 55315083 55315298 -46065223 + MER20 DNA MER1_type 1 217 -2 253 308 31 0 chr15 55315376 55315441 -46065080 + L2 LINE L2 3186 3252 -20 204 188 0 0 chr15 55315443 55315475 -46065046 + polypurine Low_complexity Low_complexity 4 35 0 382 132 0 0 chr15 55315730 55315783 -46064738 - AluSx SINE Alu -18 284 232 1229 102 0 0 chr15 55315787 55315954 -46064567 - AluSx SINE Alu -145 167 1 684 223 23 57 chr15 55317098 55317273 -46063248 + MER69A DNA AcHobo 6 174 -3 762 239 13 0 chr15 55317493 55317652 -46062869 - MER5A DNA MER1_type -27 162 2 640 210 41 78 chr15 55317661 55317904 -46062617 + MER106A DNA MER1_type 3 236 0 271 254 16 16 chr15 55317997 55318060 -46062461 + MIR SINE MIR 17 79 -129 184 245 181 21 chr15 55319505 55319599 -46060922 + MIR SINE MIR 111 219 -43 590 332 84 45 chr15 55319632 55320300 -46060221 - L3 LINE CR1 -412 1165 472 267 297 36 36 chr15 55320909 55321020 -46059501 - L3 LINE CR1 -1018 559 449 182 239 0 84 chr15 55323013 55323084 -46057437 - MIR SINE MIR -49 213 149 422 248 128 8 chr15 55323094 55323211 -46057310 - MIR SINE MIR -75 187 57 232 159 0 0 chr15 55323853 55323897 -46056624 + (CA)n Simple_repeat Simple_repeat 2 45 0 776 255 25 25 chr15 55325237 55325441 -46055080 + MIR SINE MIR 59 262 0 320 311 81 0 chr15 55325616 55325764 -46054757 - L3 LINE CR1 -352 1225 1066 2381 118 13 37 chr15 55326750 55327131 -46053390 - THE1C LTR MaLR 0 375 4 431 153 0 12 chr15 55327256 55327341 -46053180 + GA-rich Low_complexity Low_complexity 3 86 0 1551 166 113 98 chr15 55327651 55328109 -46052412 - LTR48B LTR ERV1 0 644 180 327 231 19 67 chr15 55328812 55328916 -46051605 - L2 LINE L2 -1 3271 3173 458 227 173 27 chr15 55329051 55329201 -46051320 + HsTC2c DNA Tc2 167 338 -391 917 250 132 10 chr15 55329248 55329536 -46050985 + HsTC2c DNA Tc2 405 727 -2 453 323 9 10 chr15 55329685 55329891 -46050630 - MIR3 SINE MIR -50 212 9 187 62 0 83 chr15 55330122 55330170 -46050351 + (CATTG)n Simple_repeat Simple_repeat 2 45 0 658 288 106 45 chr15 55330366 55330823 -46049698 + L1ME4a LINE L1 5578 6067 -54 2140 111 0 13 chr15 55330823 55331139 -46049382 - AluSx SINE Alu 0 312 1 658 288 106 45 chr15 55331139 55331164 -46049357 + L1ME4a LINE L1 6067 6089 -32 195 288 100 12 chr15 55331537 55331617 -46048904 - L2 LINE L2 -93 3179 3093 451 305 40 34 chr15 55332883 55333060 -46047461 + MIR SINE MIR 35 212 -50 234 136 0 0 chr15 55333069 55333113 -46047408 + (TAG)n Simple_repeat Simple_repeat 1 44 0 1955 128 0 0 chr15 55333279 55333568 -46046953 + AluSx SINE Alu 1 289 -23 2437 157 107 9 chr15 55333591 55334049 -46046472 - MLT1D LTR MaLR -2 503 1 215 245 20 0 chr15 55334126 55334175 -46046346 - L2 LINE L2 0 3313 3264 204 125 0 0 chr15 55334259 55334291 -46046230 + (TA)n Simple_repeat Simple_repeat 2 33 0 271 310 140 0 chr15 55334321 55334421 -46046100 - MIR3 SINE MIR -23 185 72 194 266 195 9 chr15 55334510 55334623 -46045898 - L2 LINE L2 -829 2485 2352 2934 253 28 22 chr15 55334851 55335811 -46044710 - L1MEc LINE L1 -4811 1585 620 433 299 15 15 chr15 55336605 55336739 -46043782 - MIR3 SINE MIR -71 137 4 189 167 104 21 chr15 55336716 55336764 -46043757 - L3 LINE CR1 -1156 421 370 * 1093 146 4 114 chr15 55336795 55337041 -46043480 - MER20 DNA MER1_type 0 219 1 892 227 79 36 chr15 55337395 55337673 -46042848 + L1ME3 LINE L1 5835 6124 -38 225 94 0 0 chr15 55337680 55337712 -46042809 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 2302 84 0 10 chr15 55337864 55338174 -46042347 + AluY SINE Alu 1 307 -4 231 36 0 0 chr15 55340643 55340671 -46039850 + (TC)n Simple_repeat Simple_repeat 1 28 0 27 0 0 0 chr15 55342345 55342372 -46038149 + AT_rich Low_complexity Low_complexity 1 27 0 1462 189 33 0 chr15 55342374 55342494 -46038027 + AluJo SINE Alu 1 116 -196 198 0 0 0 chr15 55342494 55342516 -46038005 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 1462 189 33 0 chr15 55342516 55342697 -46037824 + AluJo SINE Alu 116 312 0 2118 266 83 38 chr15 55342700 55343920 -46036601 - L1MC4a LINE L1 -743 5403 4885 380 277 339 0 chr15 55344645 55344822 -46035699 - MIR SINE MIR -13 249 13 341 258 52 10 chr15 55344835 55344932 -46035589 + MER5A DNA MER1_type 38 138 -51 408 306 58 12 chr15 55345535 55345724 -46034797 - MIR SINE MIR -65 197 2 438 252 63 24 chr15 55346382 55346509 -46034012 + L2 LINE L2 3168 3299 -14 324 48 0 0 chr15 55346511 55346553 -46033968 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 1089 95 0 0 chr15 55346750 55346897 -46033624 + AluSp/q SINE Alu 156 302 -11 871 161 67 7 chr15 55347103 55347252 -46033269 - MIR SINE MIR -81 181 24 959 142 39 0 chr15 55347253 55347408 -46033113 - AluJb SINE Alu -17 295 135 379 252 0 72 chr15 55348572 55348683 -46031838 + MIR3 SINE MIR 74 176 -32 3231 211 63 3 chr15 55349380 55350108 -46030413 - L1ME1 LINE L1 -74 6092 5321 363 266 32 0 chr15 55352084 55352178 -46028343 + MIR SINE MIR 164 260 -2 447 275 131 29 chr15 55352251 55352625 -46027896 + L1ME4a LINE L1 5629 6040 -81 234 360 67 53 chr15 55352843 55353126 -46027395 - L2 LINE L2 -831 2483 2197 469 273 78 49 chr15 55353706 55353911 -46026610 - L3 LINE CR1 -219 1358 1148 277 303 98 25 chr15 55354032 55354154 -46026367 + L2 LINE L2 3142 3272 0 510 192 30 0 chr15 55354515 55354614 -46025907 - MIR SINE MIR -25 237 136 297 212 172 40 chr15 55355195 55355294 -46025227 - L2 LINE L2 -602 2712 2601 194 319 138 9 chr15 55356278 55356394 -46024127 + L2 LINE L2 2725 2855 -459 211 257 140 73 chr15 55357320 55357456 -46023065 - MIR SINE MIR -10 252 108 821 265 83 73 chr15 55357580 55357889 -46022632 - MLT1J LTR MaLR 0 511 194 411 163 0 23 chr15 55357889 55357975 -46022546 - L1MB8 LINE L1 0 6178 6095 821 265 83 73 chr15 55357975 55358144 -46022377 - MLT1J LTR MaLR -317 194 28 354 309 55 93 chr15 55358364 55358836 -46021685 + L2 LINE L2 2818 3271 -1 1091 193 29 0 chr15 55359000 55359207 -46021314 - MIR SINE MIR -3 259 47 201 256 0 0 chr15 55359216 55359259 -46021262 + L2 LINE L2 3230 3272 0 1868 156 10 0 chr15 55359482 55359790 -46020731 - AluJb SINE Alu -1 311 1 1023 154 11 22 chr15 55360187 55360369 -46020152 + MER20 DNA MER1_type 36 215 -4 326 301 88 30 chr15 55362030 55362238 -46018283 + L2 LINE L2 2798 3019 -253 1965 85 64 7 chr15 55362329 55362610 -46017911 - AluSp SINE Alu -16 297 1 2180 115 0 3 chr15 55363073 55363386 -46017135 - AluSx SINE Alu 0 312 1 1117 184 43 26 chr15 55363929 55364162 -46016359 - AluJo SINE Alu -13 299 63 180 362 0 0 chr15 55365968 55366037 -46014484 + MIR SINE MIR 65 133 -129 365 306 36 9 chr15 55368725 55368836 -46011685 - MIR3 SINE MIR -52 156 43 2388 87 0 0 chr15 55369515 55369826 -46010695 - AluSx SINE Alu -1 311 1 258 185 0 74 chr15 55370036 55370048 -46010473 + MER3 DNA MER1_type 41 48 -161 855 192 62 31 chr15 55370048 55370241 -46010280 - MER3 DNA MER1_type -1 208 10 181 169 31 138 chr15 55370890 55370955 -46009566 - MIR SINE MIR -36 226 169 274 255 9 57 chr15 55371136 55371242 -46009279 + C-rich Low_complexity Low_complexity 2 102 0 200 346 10 30 chr15 55371457 55371558 -46008963 + MIR SINE MIR 21 119 -89 307 315 98 7 chr15 55371714 55371857 -46008664 - MIR SINE MIR -70 192 37 1692 168 11 0 chr15 55372003 55372289 -46008232 + AluJo SINE Alu 1 289 -23 773 157 16 0 chr15 55373304 55373425 -46007096 + FLAM_C SINE Alu 3 125 -18 194 88 0 29 chr15 55373425 55373459 -46007062 + (GGA)n Simple_repeat Simple_repeat 1 33 0 605 216 71 57 chr15 55374413 55374848 -46005673 - LTR33 LTR ERVL 0 521 9 262 289 48 0 chr15 55374902 55374985 -46005536 + MIR SINE MIR 173 259 -3 447 242 180 16 chr15 55375261 55375517 -46005004 - L1ME4a LINE L1 -22 6099 5802 671 280 47 39 chr15 55375518 55375775 -46004746 + MIR SINE MIR 3 261 -1 230 265 103 26 chr15 55375794 55375911 -46004610 - L1ME4a LINE L1 -352 5769 5644 708 242 70 16 chr15 55375939 55376125 -46004396 + MIR SINE MIR 19 214 -48 2379 66 0 3 chr15 55376184 55376489 -46004032 - AluY SINE Alu -7 304 1 2311 89 3 0 chr15 55376871 55377174 -46003347 - AluSc SINE Alu -5 304 1 1584 143 147 23 chr15 55377274 55377574 -46002947 + MER1B DNA MER1_type 1 337 0 335 143 36 0 chr15 55378128 55378184 -46002337 - L2 LINE L2 -1 3312 3255 320 297 130 0 chr15 55378209 55378347 -46002174 - MER117 DNA MER1_type 0 197 42 321 351 27 0 chr15 55378521 55378632 -46001889 - MER5A DNA MER1_type -29 160 47 237 163 0 0 chr15 55379167 55379216 -46001305 + T-rich Low_complexity Low_complexity 1 49 0 2023 117 7 3 chr15 55379272 55379579 -46000942 - AluSq SINE Alu -1 312 5 27 29 0 0 chr15 55379606 55379640 -46000881 + AT_rich Low_complexity Low_complexity 1 34 0 32 43 0 0 chr15 55379801 55379847 -46000674 + AT_rich Low_complexity Low_complexity 1 46 0 1490 186 3 7 chr15 55380232 55380523 -45999998 - AluSc SINE Alu -11 298 9 2133 64 3 41 chr15 55380549 55380844 -45999677 - AluSx SINE Alu -1 311 28 488 277 96 52 chr15 55380844 55381187 -45999334 - L1ME4a LINE L1 -2172 5636 5279 1824 128 7 4 chr15 55381281 55381600 -45998921 - AluSx SINE Alu 0 320 1 314 304 104 0 chr15 55381730 55381950 -45998571 - L1ME4a LINE L1 -1095 5051 4809 198 0 0 0 chr15 55382082 55382104 -45998417 + (A)n Simple_repeat Simple_repeat 1 22 0 552 205 25 33 chr15 55382328 55382450 -45998071 + MIR SINE MIR 80 200 -62 225 65 0 0 chr15 55383210 55383241 -45997280 + (TC)n Simple_repeat Simple_repeat 2 32 0 4920 117 31 54 chr15 55383478 55384355 -45996166 - MER4D LTR ERV1 -4 829 1 200 177 226 0 chr15 55385023 55385085 -45995436 - L2 LINE L2 0 3272 3197 227 254 15 30 chr15 55385594 55385661 -45994860 + MER103 DNA DNA 30 95 -71 463 289 159 0 chr15 55386125 55386332 -45994189 - MIR SINE MIR -7 255 16 207 0 0 0 chr15 55386532 55386555 -45993966 + (TC)n Simple_repeat Simple_repeat 2 24 0 187 252 136 68 chr15 55386566 55386669 -45993852 - MER5A DNA MER1_type -7 182 73 2100 109 3 6 chr15 55386825 55387138 -45993383 + AluSx SINE Alu 1 312 0 236 265 98 20 chr15 55387293 55387395 -45993126 - L3b LINE CR1 -197 1386 1277 237 341 130 0 chr15 55387898 55388021 -45992500 - MIR SINE MIR -70 192 54 581 250 154 0 chr15 55388398 55388554 -45991967 - MER5A DNA MER1_type 0 189 10 227 372 37 14 chr15 55388685 55388849 -45991672 + MIR SINE MIR 4 173 -82 585 276 50 18 chr15 55389116 55389374 -45991147 + L1MC/D LINE L1 5361 5630 -534 1317 80 0 11 chr15 55389418 55389594 -45990927 + AluSc SINE Alu 120 293 -16 960 152 0 0 chr15 55389594 55389759 -45990762 + (TA)n Simple_repeat Simple_repeat 1 165 0 241 167 0 0 chr15 55389762 55389798 -45990723 - L2 LINE L2 -83 3230 3195 299 282 73 8 chr15 55389973 55390097 -45990424 + L1MC/D LINE L1 5716 5847 -1961 474 241 92 29 chr15 55390652 55390826 -45989695 + L3 LINE CR1 1098 1282 -295 21 36 0 0 chr15 55391688 55391716 -45988805 + AT_rich Low_complexity Low_complexity 1 28 0 1959 120 59 45 chr15 55391910 55392268 -45988253 + MLT1A1 LTR MaLR 1 363 -2 277 335 117 5 chr15 55392898 55393086 -45987435 + L1ME LINE L1 5633 5841 -329 316 194 16 0 chr15 55393094 55393156 -45987365 + MER96 DNA MER1_type? 1 63 -112 485 298 141 28 chr15 55393302 55393628 -45986893 - L1M4 LINE L1 -1603 4543 4181 473 137 0 14 chr15 55393658 55393731 -45986790 - AluS SINE Alu -240 73 2 348 292 110 82 chr15 55393732 55393796 -45986725 - L1M4 LINE L1 -2259 3887 3826 2139 88 7 3 chr15 55393796 55394092 -45986429 - AluSc SINE Alu -12 297 1 348 292 110 82 chr15 55394092 55394220 -45986301 - L1M4 LINE L1 -2320 3826 3703 1200 195 75 18 chr15 55394220 55394502 -45986019 - AluSx SINE Alu -4 298 1 348 292 110 82 chr15 55394502 55394664 -45985857 - L1M4 LINE L1 -2443 3703 3522 1383 157 19 88 chr15 55395224 55395405 -45985116 - AluSx SINE Alu -16 296 145 2208 94 13 0 chr15 55395405 55395713 -45984808 - AluSp SINE Alu -1 312 1 1383 157 19 88 chr15 55395713 55395849 -45984672 - AluSx SINE Alu -167 145 1 426 221 16 8 chr15 55396166 55396293 -45984228 + GA-rich Low_complexity Low_complexity 2 129 0 260 222 0 0 chr15 55396339 55396393 -45984128 - MER96 DNA MER1_type? -4 171 118 384 232 122 0 chr15 55396472 55396554 -45983967 + MER96 DNA MER1_type? 84 175 0 464 327 173 25 chr15 55396554 55396958 -45983563 - L1M4 LINE L1 -3010 3136 2673 274 272 9 65 chr15 55397201 55397433 -45983088 - L1M4 LINE L1 -3793 2353 2135 274 288 72 22 chr15 55398178 55398317 -45982204 - HAL1 LINE L1 -933 1574 1429 700 197 0 8 chr15 55398398 55398530 -45981991 - FLAM_C SINE Alu -1 132 2 434 273 100 42 chr15 55399543 55399906 -45980615 - MLT1L LTR MaLR -35 553 165 430 236 164 36 chr15 55400015 55400180 -45980341 - MIR SINE MIR -1 261 76 192 286 32 16 chr15 55400180 55400243 -45980278 - L3 LINE CR1 -542 1035 972 2201 99 0 7 chr15 55400513 55400817 -45979704 + AluSg1 SINE Alu 1 302 -7 309 26 0 0 chr15 55400971 55401009 -45979512 + (TG)n Simple_repeat Simple_repeat 2 39 0 312 165 55 33 chr15 55401159 55401250 -45979271 - L1MC5 LINE L1 -36 7925 7833 470 264 102 89 chr15 55401311 55401626 -45978895 - L1ME4a LINE L1 -11 6110 5792 290 289 72 0 chr15 55401700 55401797 -45978724 + Charlie7 DNA MER1_type 1 104 -2508 241 257 158 13 chr15 55401780 55401932 -45978589 + Charlie7 DNA MER1_type 2434 2607 -5 * 1205 183 119 4 chr15 55401933 55402201 -45978320 + AluJo SINE Alu 1 299 -13 23 0 0 0 chr15 55402687 55402710 -45977811 + AT_rich Low_complexity Low_complexity 1 23 0 212 143 29 0 chr15 55403203 55403238 -45977283 - L2 LINE L2 -12 3301 3266 418 318 76 0 chr15 55404374 55404506 -45976015 + L2 LINE L2 3118 3259 -13 22 56 0 0 chr15 55404805 55404841 -45975680 + AT_rich Low_complexity Low_complexity 1 36 0 891 145 0 0 chr15 55405490 55405621 -45974900 - FLAM_C SINE Alu -2 131 1 2337 214 108 57 chr15 55405639 55406678 -45973843 - L1MC5 LINE L1 -48 7913 6693 180 0 0 0 chr15 55406811 55406831 -45973690 + (TA)n Simple_repeat Simple_repeat 2 21 0 409 262 122 33 chr15 55406837 55407051 -45973470 + L1ME LINE L1 5538 5770 -351 21 0 0 0 chr15 55407205 55407226 -45973295 + AT_rich Low_complexity Low_complexity 1 21 0 1848 122 21 95 chr15 55407226 55407563 -45972958 - AluSx SINE Alu 0 312 1 2073 69 22 100 chr15 55408100 55408420 -45972101 - AluSx SINE Alu -17 295 1 383 270 185 21 chr15 55408469 55408658 -45971863 - HAL1 LINE L1 -2275 232 13 180 77 0 0 chr15 55409595 55409621 -45970900 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 1106 166 83 25 chr15 55412653 55412931 -45967590 - MER33 DNA MER1_type 0 324 31 311 247 193 13 chr15 55412986 55413136 -45967385 + MIR SINE MIR 74 250 -12 614 157 107 8 chr15 55413959 55414080 -45966441 + FLAM_A SINE Alu 1 133 0 231 170 0 0 chr15 55414082 55414129 -45966392 + GA-rich Low_complexity Low_complexity 4 50 0 22 0 0 0 chr15 55414225 55414247 -45966274 + AT_rich Low_complexity Low_complexity 1 22 0 304 306 115 25 chr15 55414809 55414966 -45965555 - L1ME4a LINE L1 -50 6071 5901 538 196 0 0 chr15 55415049 55415151 -45965370 - U13 snRNA snRNA -2 102 1 281 225 28 0 chr15 55416016 55416087 -45964434 - L1MC4 LINE L1 -1 8041 7969 2028 127 7 0 chr15 55416096 55416404 -45964117 + AluSx SINE Alu 1 310 -2 2219 232 98 7 chr15 55416424 55417023 -45963498 - L1MC4 LINE L1 -151 7891 7238 21 0 0 0 chr15 55417056 55417077 -45963444 + AT_rich Low_complexity Low_complexity 1 21 0 822 141 59 0 chr15 55417093 55417228 -45963293 - L1MC4 LINE L1 -1097 6945 6803 185 192 0 39 chr15 55417515 55417567 -45962954 + (CATA)n Simple_repeat Simple_repeat 2 51 0 460 228 44 22 chr15 55417820 55417956 -45962565 - Charlie8 DNA MER1_type -2254 163 25 404 311 74 7 chr15 55418217 55418365 -45962156 - MER20B DNA MER1_type -622 161 4 207 0 0 0 chr15 55418792 55418815 -45961706 + (A)n Simple_repeat Simple_repeat 1 23 0 2101 132 3 0 chr15 55418995 55419298 -45961223 + AluSx SINE Alu 1 304 -8 1258 210 48 28 chr15 55419664 55419955 -45960566 - AluJo SINE Alu -15 297 1 265 296 49 12 chr15 55420537 55420618 -45959903 - L2 LINE L2 -2 3270 3187 249 347 50 0 chr15 55420912 55421033 -45959488 - L3b LINE CR1 -86 1497 1371 566 206 53 38 chr15 55421626 55421757 -45958764 - MER5A DNA MER1_type -55 134 2 1531 197 69 3 chr15 55421763 55422083 -45958438 - MER58B DNA MER1_type 0 341 1 485 229 271 7 chr15 55422092 55422232 -45958289 - MER5B DNA MER1_type -1 177 1 341 179 325 8 chr15 55422300 55422423 -45958098 + MER103 DNA DNA 3 164 -2 180 347 121 32 chr15 55423948 55424072 -45956449 - MIR3 SINE MIR -73 135 1 276 100 0 0 chr15 55424424 55424464 -45956057 + (CA)n Simple_repeat Simple_repeat 2 41 0 224 359 11 11 chr15 55424733 55424825 -45955696 + L3 LINE CR1 594 685 -892 24 32 0 0 chr15 55426444 55426475 -45954046 + AT_rich Low_complexity Low_complexity 1 31 0 8056 186 24 9 chr15 55427078 55428750 -45951771 + L1M2a LINE L1 676 2469 -4699 736 190 0 0 chr15 55428750 55428871 -45951650 + AluJb SINE Alu 1 121 -191 1577 163 87 17 chr15 55428948 55429236 -45951285 + AluSx SINE Alu 5 312 0 2186 149 25 159 chr15 55429277 55429887 -45950634 + L1M2a LINE L1 2593 3283 -3885 216 0 0 0 chr15 55429887 55429911 -45950610 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2438 75 0 0 chr15 55429913 55430218 -45950303 + AluY SINE Alu 1 305 -6 2186 149 25 159 chr15 55430218 55430329 -45950192 + L1M2a LINE L1 3096 3220 -3948 527 136 23 11 chr15 55430380 55430468 -45950053 - FLAM SINE Alu -17 126 38 5287 192 30 29 chr15 55430476 55430647 -45949874 + L1M2a LINE L1 3232 3401 -3766 2205 107 3 0 chr15 55430647 55430938 -45949583 + AluSx SINE Alu 1 292 -20 5287 192 30 29 chr15 55430938 55431747 -45948774 + L1M2a LINE L1 3401 4217 -2950 2340 100 0 3 chr15 55431747 55432056 -45948465 + AluY SINE Alu 1 308 -3 5287 192 30 29 chr15 55432056 55432373 -45948148 + L1M2a LINE L1 4217 4532 -2635 3957 158 68 19 chr15 55432409 55433215 -45947306 + L1M2a LINE L1 5089 5934 -1233 2207 4 0 0 chr15 55433315 55433553 -45946968 - AluYb8 SINE Alu -80 238 1 1574 121 4 4 chr15 55433644 55433875 -45946646 + AluJb SINE Alu 79 309 -3 343 294 217 14 chr15 55434316 55434459 -45946062 + MIR3 SINE MIR 10 181 -27 730 222 58 94 chr15 55434591 55435122 -45945399 - L1MC5 LINE L1 -50 7911 7400 203 406 56 22 chr15 55435390 55435570 -45944951 - MIR3 SINE MIR -2 206 21 3229 100 0 6 chr15 55436113 55436582 -45943939 + L1PA8 LINE L1 5707 6172 0 2242 96 0 10 chr15 55436589 55436901 -45943620 + AluSc SINE Alu 1 309 0 21 36 0 0 chr15 55437043 55437071 -45943450 + AT_rich Low_complexity Low_complexity 1 28 0 1548 160 0 4 chr15 55437194 55437438 -45943083 - AluJo SINE Alu -69 243 1 5100 189 38 18 chr15 55437735 55438949 -45941572 + L1MD2 LINE L1 5113 6357 -2 2168 160 16 30 chr15 55439169 55439606 -45940915 + L1MB4 LINE L1 5750 6180 0 1366 220 113 27 chr15 55439610 55440019 -45940502 + L1ME2 LINE L1 5698 6141 -23 374 298 37 64 chr15 55440067 55440285 -45940236 + L1MC4 LINE L1 7830 8041 -1 300 242 150 39 chr15 55442228 55442381 -45938140 - L1ME4a LINE L1 -56 6065 5896 1823 119 28 32 chr15 55442386 55442671 -45937850 - AluJo SINE Alu -20 292 9 187 255 104 75 chr15 55443163 55443269 -45937252 + L2 LINE L2 3190 3298 -15 2110 137 55 73 chr15 55443453 55443890 -45936631 + MSTB1 LTR MaLR 4 432 0 192 40 0 0 chr15 55444112 55444137 -45936384 + (CAG)n Simple_repeat Simple_repeat 2 26 0 281 234 0 0 chr15 55444142 55444206 -45936315 + MER5A DNA MER1_type 49 112 -77 305 233 33 33 chr15 55444829 55444949 -45935572 + L1MC5 LINE L1 7624 7743 -218 616 242 118 0 chr15 55445050 55445211 -45935310 + MER58C DNA MER1_type 36 215 0 352 203 110 68 chr15 55445480 55445598 -45934923 - L2 LINE L2 0 3313 3191 222 329 0 26 chr15 55446499 55446575 -45933946 + GA-rich Low_complexity Low_complexity 4 77 0 274 243 63 36 chr15 55446581 55446636 -45933885 + L1MC4 LINE L1 7928 7980 -62 2224 105 31 0 chr15 55446636 55446930 -45933591 + AluSx SINE Alu 2 304 -8 274 243 63 36 chr15 55446930 55446985 -45933536 + L1MC4 LINE L1 7980 8041 -1 1771 95 37 0 chr15 55447670 55447911 -45932610 + AluY SINE Alu 62 311 0 2121 128 0 0 chr15 55448601 55448898 -45931623 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr15 55450318 55450339 -45930182 + AT_rich Low_complexity Low_complexity 1 21 0 505 296 65 16 chr15 55450344 55450530 -45929991 + MIR SINE MIR 7 201 -61 2112 62 0 0 chr15 55450988 55451247 -45929274 + AluY SINE Alu 49 307 -4 639 147 0 9 chr15 55451362 55451471 -45929050 + L1MC3 LINE L1 7346 7453 -332 385 172 108 21 chr15 55451459 55451552 -45928969 + L1MC2 LINE L1 6231 6331 -13 * 1000 205 5 0 chr15 55451768 55451953 -45928568 - MER5A DNA MER1_type -2 187 2 2234 91 7 0 chr15 55454791 55455087 -45925434 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr15 55455787 55455809 -45924712 + AT_rich Low_complexity Low_complexity 1 22 0 322 254 191 0 chr15 55455929 55456055 -45924466 + MER103 DNA DNA 1 150 -16 1642 157 7 16 chr15 55456823 55457128 -45923393 - AluSx SINE Alu 0 312 11 1911 128 7 4 chr15 55457320 55457639 -45922882 + AluSx SINE Alu 1 320 0 725 283 64 54 chr15 55457770 55458076 -45922445 + L1MC/D LINE L1 5318 5619 -2189 1858 97 7 57 chr15 55458076 55458376 -45922145 + AluSx SINE Alu 28 312 0 2280 89 0 23 chr15 55458385 55458689 -45921832 + AluSc SINE Alu 1 297 -12 725 283 64 54 chr15 55458689 55458873 -45921648 + L1MC/D LINE L1 5626 5823 -1985 244 184 0 0 chr15 55458873 55458911 -45921610 + Alu SINE Alu 1 38 -263 417 185 46 37 chr15 55458911 55459019 -45921502 + AluJo/FRAM SINE Alu 196 304 -8 2229 103 6 3 chr15 55459340 55459651 -45920870 + AluSq SINE Alu 1 312 -1 279 122 0 0 chr15 55459707 55459756 -45920765 + (A)n Simple_repeat Simple_repeat 1 49 0 323 350 29 7 chr15 55460291 55460431 -45920090 + MER5A DNA MER1_type 47 189 0 288 309 0 0 chr15 55460450 55460544 -45919977 + MER5A DNA MER1_type 14 107 -82 441 301 15 7 chr15 55460937 55461073 -45919448 - L2 LINE L2 0 3272 3136 616 183 44 7 chr15 55461096 55461233 -45919288 + MER96B DNA MER1_type? 1 142 -275 750 219 26 0 chr15 55461233 55461388 -45919133 + AluJb SINE Alu 117 275 -37 1652 189 36 0 chr15 55461389 55461670 -45918851 + AluJb SINE Alu 1 291 -21 451 80 0 80 chr15 55461674 55461749 -45918772 + MER96B DNA MER1_type? 163 231 -186 681 252 7 7 chr15 55461982 55462137 -45918384 + MER5B DNA MER1_type 4 158 -20 1111 191 5 10 chr15 55462142 55462346 -45918175 + AluJo SINE Alu 87 289 -23 31 0 0 0 chr15 55462346 55462377 -45918144 + AT_rich Low_complexity Low_complexity 1 31 0 776 308 75 61 chr15 55462401 55463222 -45917299 - L2 LINE L2 -430 2884 2052 2387 90 0 0 chr15 55464602 55464903 -45915618 - AluSx SINE Alu -11 301 1 208 254 119 0 chr15 55465015 55465074 -45915447 + L2 LINE L2 2997 3062 -210 489 273 36 36 chr15 55465115 55465309 -45915212 - L2 LINE L2 -7 3306 3113 387 321 106 57 chr15 55466863 55467623 -45912898 + L2 LINE L2 2462 3250 -22 2285 78 16 13 chr15 55467623 55467930 -45912591 - AluY SINE Alu 0 311 4 1791 148 17 17 chr15 55467937 55468227 -45912294 - AluJo SINE Alu -22 290 1 500 213 8 8 chr15 55468443 55468565 -45911956 + L1MA9 LINE L1 6153 6274 -38 745 278 94 31 chr15 55469073 55469588 -45910933 - L1MDb LINE L1 -3621 2785 2284 367 302 117 38 chr15 55469904 55470353 -45910168 - L1MDb LINE L1 -4738 1849 1213 328 307 10 10 chr15 55470394 55470495 -45910026 - L1MDb LINE L1 -5180 1229 1129 205 220 20 0 chr15 55471106 55471156 -45909365 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 21 0 0 0 chr15 55471156 55471177 -45909344 + AT_rich Low_complexity Low_complexity 1 21 0 306 197 0 0 chr15 55471422 55471483 -45909038 - L1M LINE L1 -807 5357 5297 14881 152 27 16 chr15 55471485 55474758 -45905763 - L1MA2 LINE L1 0 7723 4486 1572 207 3 0 chr15 55474758 55475053 -45905468 - AluJo SINE Alu -16 296 1 14881 152 27 16 chr15 55475053 55475570 -45904951 - L1MA2 LINE L1 -3237 4486 3976 2018 171 54 20 chr15 55475570 55475979 -45904542 - MSTA LTR MaLR -1 427 5 14881 152 27 16 chr15 55475979 55476050 -45904471 - L1MA2 LINE L1 -3747 3976 3907 459 28 14 28 chr15 55476050 55476121 -45904400 + (TA)n Simple_repeat Simple_repeat 2 71 0 2150 131 0 3 chr15 55476124 55476429 -45904092 - AluSq SINE Alu -9 304 1 14881 152 27 16 chr15 55476429 55478241 -45902280 - L1MA2 LINE L1 -3817 3906 1977 3945 257 75 60 chr15 55478245 55479432 -45901089 - L1M4 LINE L1 -818 5328 4161 405 67 0 0 chr15 55479432 55479492 -45901029 + Alu SINE Alu 241 300 -12 3945 257 75 60 chr15 55479492 55479930 -45900591 - L1M4 LINE L1 -1985 4161 3615 2200 90 13 13 chr15 55479930 55480229 -45900292 - AluY SINE Alu -12 299 1 3945 257 75 60 chr15 55480229 55480257 -45900264 - L1M4 LINE L1 -2531 3615 3589 808 240 0 22 chr15 55480381 55480560 -45899961 - AluJb SINE Alu -2 310 136 303 229 55 0 chr15 55480576 55480685 -45899836 - L1MEc LINE L1 -4025 2371 2257 461 155 0 0 chr15 55480703 55480774 -45899747 - FLAM_A SINE Alu -27 115 45 457 244 85 15 chr15 55480774 55480975 -45899546 - L1MEc LINE L1 -4125 2271 2057 985 194 63 29 chr15 55480990 55481196 -45899325 - MER58A DNA MER1_type -9 215 3 1604 284 68 15 chr15 55481197 55481946 -45898575 - L1MEc LINE L1 -4331 2065 1277 1493 289 101 44 chr15 55481969 55482544 -45897977 - L1MEc LINE L1 -5226 1170 629 1479 184 0 46 chr15 55482544 55482848 -45897673 - AluJo SINE Alu -22 290 1 1493 289 101 44 chr15 55482848 55483347 -45897174 - L1MEc LINE L1 -5767 629 35 611 316 60 35 chr15 55483443 55484121 -45896400 - L1M4 LINE L1 -1172 4974 4280 243 305 9 57 chr15 55484144 55484249 -45896272 + L2 LINE L2 2555 2654 -660 399 359 129 46 chr15 55484283 55484609 -45895912 + L2 LINE L2 2916 3268 -4 250 246 18 0 chr15 55484939 55484996 -45895525 + MER81 DNA DNA 57 114 0 21 36 0 0 chr15 55485006 55485034 -45895487 + AT_rich Low_complexity Low_complexity 1 28 0 183 298 64 0 chr15 55485503 55485550 -45894971 - L2 LINE L2 -13 3300 3251 200 215 8 157 chr15 55485795 55485916 -45894605 + L2 LINE L2 7 109 -3205 1454 270 95 72 chr15 55485940 55486688 -45893833 + L2 LINE L2 550 1314 -2000 1226 149 57 34 chr15 55486690 55486952 -45893569 - Tigger6 DNA MER2_type 0 1597 1330 284 328 69 0 chr15 55488370 55488486 -45892035 + L2 LINE L2 3190 3313 0 208 262 135 64 chr15 55488763 55488904 -45891617 + L2 LINE L2 2997 3147 -166 961 265 82 20 chr15 55489920 55490320 -45890201 + L1ME1 LINE L1 5734 6158 -8 535 237 116 70 chr15 55490500 55490829 -45889692 + L1ME4a LINE L1 5538 5881 -240 22 35 0 0 chr15 55491001 55491030 -45889491 + AT_rich Low_complexity Low_complexity 1 29 0 288 336 33 16 chr15 55491079 55491201 -45889320 - MIR3 SINE MIR -6 202 79 743 171 8 8 chr15 55491793 55491922 -45888599 + AluJo SINE Alu 1 129 -183 216 0 0 0 chr15 55492988 55493012 -45887509 + (A)n Simple_repeat Simple_repeat 1 24 0 331 297 0 0 chr15 55493030 55493121 -45887400 + GA-rich Low_complexity Low_complexity 2 92 0 207 194 0 0 chr15 55493344 55493380 -45887141 + (CAGA)n Simple_repeat Simple_repeat 4 39 0 21 36 0 0 chr15 55493647 55493675 -45886846 + AT_rich Low_complexity Low_complexity 1 28 0 231 170 0 0 chr15 55493732 55493779 -45886742 + (TA)n Simple_repeat Simple_repeat 1 47 0 2471 69 3 0 chr15 55493931 55494234 -45886287 - AluY SINE Alu -7 304 1 1989 65 0 50 chr15 55495109 55495388 -45885133 + AluSc SINE Alu 1 265 -44 23 0 0 0 chr15 55495503 55495526 -45884995 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr15 55496208 55496229 -45884292 + AT_rich Low_complexity Low_complexity 1 21 0 471 278 6 37 chr15 55496457 55496619 -45883902 + MIR SINE MIR 96 252 -10 186 103 0 0 chr15 55496621 55496650 -45883871 + (CTA)n Simple_repeat Simple_repeat 1 29 0 626 229 51 0 chr15 55496716 55496873 -45883648 + MER58B DNA MER1_type 39 203 -138 870 205 0 0 chr15 55496873 55497029 -45883492 + AluJo SINE Alu 135 290 -22 679 226 30 18 chr15 55497036 55497200 -45883321 + MER58B DNA MER1_type 172 337 -4 235 234 16 0 chr15 55499544 55499608 -45880913 - L1MCa LINE L1 -4356 2070 2006 241 244 13 51 chr15 55499745 55499823 -45880698 + L2 LINE L2 3181 3255 -17 1902 155 0 13 chr15 55499841 55500145 -45880376 + AluSx SINE Alu 12 311 -1 1910 159 0 0 chr15 55500413 55500722 -45879799 - AluJo SINE Alu -3 309 1 1547 181 26 16 chr15 55501109 55501412 -45879109 - AluJo SINE Alu -6 306 1 25 31 0 0 chr15 55502661 55502693 -45877828 + AT_rich Low_complexity Low_complexity 1 32 0 272 274 44 53 chr15 55503327 55503440 -45877081 + MIR SINE MIR 119 230 -32 485 266 44 38 chr15 55503664 55503822 -45876699 + L1MD2 LINE L1 5506 5664 -2144 2154 132 7 0 chr15 55503881 55504184 -45876337 + AluSx SINE Alu 1 305 -7 1694 134 46 73 chr15 55504200 55504528 -45875993 + MER2 DNA MER2_type 2 320 -25 1436 241 74 44 chr15 55504535 55505257 -45875264 + MER21B LTR ERV1 17 758 -105 22 0 0 0 chr15 55505402 55505424 -45875097 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr15 55505451 55505481 -45875040 + AT_rich Low_complexity Low_complexity 1 30 0 2197 92 0 7 chr15 55505481 55505790 -45874731 + AluY SINE Alu 1 307 0 426 39 0 0 chr15 55505847 55505899 -45874622 + (TA)n Simple_repeat Simple_repeat 2 53 0 503 362 33 40 chr15 55506191 55506685 -45873836 + L1ME2 LINE L1 5 684 -5712 1919 240 61 7 chr15 55507983 55508538 -45871983 + L1MD2 LINE L1 5773 6357 -2 772 182 0 28 chr15 55508551 55508694 -45871827 + FLAM_C SINE Alu 5 143 0 211 169 0 34 chr15 55508961 55509020 -45871501 + GA-rich Low_complexity Low_complexity 5 61 0 378 261 113 54 chr15 55509020 55509068 -45871453 + L1ME2 LINE L1 879 923 -5473 189 0 0 0 chr15 55509068 55509089 -45871432 + (TA)n Simple_repeat Simple_repeat 2 22 0 378 261 113 54 chr15 55509089 55509505 -45871016 + L1ME2 LINE L1 923 1529 -4867 2058 121 3 3 chr15 55509505 55509795 -45870726 + AluSx SINE Alu 1 290 -22 378 261 113 54 chr15 55509795 55509907 -45870614 + L1ME2 LINE L1 1529 1633 -4763 1869 255 115 5 chr15 55509915 55510669 -45869852 + L1ME2 LINE L1 3355 4191 -2024 2320 93 26 0 chr15 55511975 55512277 -45868244 - AluSx SINE Alu -2 310 1 219 307 7 21 chr15 55512684 55512824 -45867697 + CT-rich Low_complexity Low_complexity 1 138 0 1332 223 115 95 chr15 55513677 55514457 -45866064 + L1ME2 LINE L1 4810 5706 -527 301 153 14 83 chr15 55514457 55514473 -45866048 + Alu SINE Alu 1 17 -282 1698 164 3 10 chr15 55514473 55514778 -45865743 + AluSq SINE Alu 1 303 -10 301 153 14 83 chr15 55514778 55514833 -45865688 + Alu SINE Alu 17 52 -247 1332 223 115 95 chr15 55514833 55515348 -45865173 + L1ME2 LINE L1 5706 6210 -23 1633 151 21 21 chr15 55516031 55516142 -45864379 + AluSx SINE Alu 25 135 -177 1987 140 3 7 chr15 55516142 55516449 -45864072 + AluSq SINE Alu 1 306 -7 1633 151 21 21 chr15 55516449 55516616 -45863905 + AluSx SINE Alu 134 303 -9 1847 177 10 3 chr15 55516760 55517071 -45863450 - AluSq SINE Alu 0 313 1 10689 178 103 51 chr15 55517104 55518609 -45861912 + L1M2 LINE L1 328 1754 -5094 1770 166 0 14 chr15 55518609 55518898 -45861623 + AluJb SINE Alu 14 298 -14 10689 178 103 51 chr15 55518898 55519783 -45860738 + L1M2 LINE L1 1754 2592 -4256 1601 182 6 59 chr15 55519783 55520107 -45860414 + AluJb SINE Alu 1 307 -5 10689 178 103 51 chr15 55520107 55521047 -45859474 + L1M2 LINE L1 2592 3857 -2991 1455 194 44 14 chr15 55521047 55521341 -45859180 + AluJo SINE Alu 10 312 0 10689 178 103 51 chr15 55521341 55521463 -45859058 + L1M2 LINE L1 3857 3971 -2877 2395 205 32 61 chr15 55521459 55522616 -45857905 + L1PA16 LINE L1 5198 6007 -159 5518 124 5 13 chr15 55521656 55522130 -45858391 + L1MA4A LINE L1 5354 5819 -484 2183 124 0 0 chr15 55522130 55522436 -45858085 + AluSx SINE Alu 1 306 -6 5518 124 5 13 chr15 55522436 55522903 -45857618 + L1MA4A LINE L1 5819 6288 -15 29 28 0 0 chr15 55522903 55522939 -45857582 + AT_rich Low_complexity Low_complexity 1 36 0 1322 176 33 46 chr15 55523577 55523906 -45856615 + L1MB4 LINE L1 5570 5894 -286 782 129 153 2 chr15 55523937 55524232 -45856289 + MSTA LTR MaLR 1 406 -22 496 110 0 0 chr15 55524226 55524299 -45856222 - 7SK RNA RNA 0 193 121 * 700 150 0 16 chr15 55524336 55524463 -45856058 - 7SK RNA RNA -68 125 1 293 95 0 0 chr15 55524463 55524505 -45856016 + MSTA LTR MaLR 387 428 0 1097 132 123 5 chr15 55524506 55524725 -45855796 + L1MB4 LINE L1 5872 6116 -64 242 82 204 0 chr15 55524824 55524873 -45855648 + L1MB4 LINE L1 6121 6179 -1 187 333 0 13 chr15 55525040 55525118 -45855403 - MIR SINE MIR -40 222 146 21 0 0 0 chr15 55525490 55525511 -45855010 + AT_rich Low_complexity Low_complexity 1 21 0 1648 166 80 0 chr15 55526057 55526370 -45854151 + MER44D DNA MER2_type 2 609 0 275 265 10 41 chr15 55526889 55526987 -45853534 + GA-rich Low_complexity Low_complexity 5 99 0 2357 108 0 0 chr15 55527038 55527344 -45853177 + AluSg SINE Alu 1 306 -4 2117 129 0 3 chr15 55527410 55527720 -45852801 + AluSx SINE Alu 1 309 -3 2166 136 0 0 chr15 55528104 55528412 -45852109 + AluSx SINE Alu 1 308 -4 1283 171 9 14 chr15 55528698 55528920 -45851601 + AluJo SINE Alu 10 230 -82 2233 114 0 3 chr15 55529766 55530073 -45850448 + AluSx SINE Alu 1 306 -6 1862 106 16 4 chr15 55530310 55530564 -45849957 + AluSc SINE Alu 1 257 -52 187 256 0 0 chr15 55530929 55530968 -45849553 + L2 LINE L2 3259 3297 -16 316 207 37 37 chr15 55531672 55531754 -45848767 - MIR3 SINE MIR -14 194 113 1342 166 136 19 chr15 55532582 55532847 -45847674 + AluJo SINE Alu 1 296 -16 1950 103 0 33 chr15 55532847 55533149 -45847372 + AluY SINE Alu 1 292 -19 1813 161 0 20 chr15 55533419 55533717 -45846804 - AluJb SINE Alu -19 293 2 2185 91 27 3 chr15 55534120 55534416 -45846105 - AluSc SINE Alu -6 303 1 363 44 0 0 chr15 55534596 55534641 -45845880 + (CA)n Simple_repeat Simple_repeat 2 46 0 209 162 18 90 chr15 55535001 55535112 -45845409 + A-rich Low_complexity Low_complexity 1 103 0 2164 117 24 0 chr15 55535453 55535743 -45844778 + AluSx SINE Alu 1 297 -15 425 265 103 15 chr15 55537257 55537393 -45843128 + MIR SINE MIR 92 239 -23 335 216 0 0 chr15 55538242 55538316 -45842205 - L1M4 LINE L1 -2114 4032 3959 789 189 0 0 chr15 55538329 55538509 -45842012 + FLAM_C SINE Alu 1 180 0 1002 252 93 3 chr15 55538511 55538864 -45841657 - L1M4 LINE L1 -2195 3951 3567 * 1926 236 45 26 chr15 55538852 55539357 -45841164 - L1MEc LINE L1 -5749 647 128 2292 111 0 0 chr15 55539357 55539654 -45840867 + AluSq SINE Alu 2 298 -15 1926 236 45 26 chr15 55539654 55539732 -45840789 - L1MEc LINE L1 -6268 128 53 366 314 45 70 chr15 55539887 55539929 -45840592 + MIR SINE MIR 14 56 -206 561 178 8 0 chr15 55539929 55540047 -45840474 + L1MB2 LINE L1 6053 6171 0 366 314 45 70 chr15 55540047 55540246 -45840275 + MIR SINE MIR 56 249 -13 295 192 100 108 chr15 55540359 55540479 -45840042 + MIR SINE MIR 48 166 -96 2240 85 0 3 chr15 55540684 55541015 -45839506 - AluY SINE Alu 0 330 1 1396 149 20 143 chr15 55541917 55542060 -45838461 + AluJo SINE Alu 1 160 -142 2111 133 0 0 chr15 55542060 55542353 -45838168 + AluSq SINE Alu 1 293 -20 1396 149 20 143 chr15 55542353 55542372 -45838149 + AluJo SINE Alu 160 180 -122 2147 124 0 6 chr15 55542372 55542687 -45837834 + AluSq SINE Alu 1 313 0 1396 149 20 143 chr15 55542687 55542866 -45837655 + AluJo SINE Alu 180 301 -1 513 196 60 60 chr15 55542900 55543033 -45837488 - MER63A DNA MER1_type -18 192 60 2110 141 0 3 chr15 55543041 55543347 -45837174 - AluJb SINE Alu -7 305 1 2060 104 0 61 chr15 55543718 55544045 -45836476 + AluSq SINE Alu 1 307 -6 721 172 0 0 chr15 55544264 55544380 -45836141 + AluJo/FLAM SINE Alu 1 116 -186 1040 91 0 0 chr15 55544381 55544513 -45836008 + AluSg/x SINE Alu 172 303 -9 941 292 44 31 chr15 55544764 55545219 -45835302 + L1MEc LINE L1 498 958 -5763 1910 149 7 3 chr15 55545226 55545530 -45834991 + AluJo SINE Alu 3 307 0 23 54 0 0 chr15 55545532 55545569 -45834952 + AT_rich Low_complexity Low_complexity 1 37 0 1443 178 38 55 chr15 55545569 55545862 -45834659 + AluJo SINE Alu 6 293 -19 27 0 0 0 chr15 55545862 55545889 -45834632 + AT_rich Low_complexity Low_complexity 1 27 0 1167 255 77 63 chr15 55545891 55546636 -45833885 + L1MEc LINE L1 1669 2474 -4247 1777 131 0 11 chr15 55546636 55546910 -45833611 + AluSx SINE Alu 39 309 -3 1167 255 77 63 chr15 55546910 55547034 -45833487 + L1MEc LINE L1 2474 2595 -4126 801 231 13 6 chr15 55547036 55547192 -45833329 + FAM SINE Alu 1 157 -18 318 50 0 0 chr15 55547195 55547235 -45833286 + (GGGGA)n Simple_repeat Simple_repeat 5 44 0 237 229 0 0 chr15 55547235 55547283 -45833238 + GA-rich Low_complexity Low_complexity 2 49 0 1317 195 10 55 chr15 55547329 55547494 -45833027 - AluJo SINE Alu -18 294 146 2239 118 3 13 chr15 55547494 55547808 -45832713 - AluSx SINE Alu -1 311 1 1317 195 10 55 chr15 55547808 55547934 -45832587 - AluJo SINE Alu -166 146 16 603 256 143 19 chr15 55547959 55548330 -45832191 + L1MEc LINE L1 2595 3011 -3529 980 176 90 4 chr15 55548352 55548597 -45831924 + L1MEc LINE L1 3070 3335 -3205 593 187 52 19 chr15 55548590 55548745 -45831776 + L1ME1 LINE L1 6002 6161 -5 * 23 0 0 0 chr15 55548754 55548777 -45831744 + AT_rich Low_complexity Low_complexity 1 23 0 692 164 30 45 chr15 55548779 55548913 -45831608 + FLAM_C SINE Alu 1 132 -1 868 130 0 43 chr15 55549394 55549532 -45830989 + FLAM_C SINE Alu 2 133 0 376 254 127 36 chr15 55549699 55549864 -45830657 + MER5A DNA MER1_type 10 189 0 798 154 89 134 chr15 55549911 55549999 -45830522 + MER46A DNA MER2_type 1 91 -2640 2021 125 16 0 chr15 55549999 55550303 -45830218 + AluSx SINE Alu 1 309 -3 798 154 89 134 chr15 55550303 55550461 -45830060 + MER46A DNA MER2_type 91 236 0 461 238 164 0 chr15 55550618 55550740 -45829781 + MER58A DNA MER1_type 2 143 0 1842 180 154 48 chr15 55550943 55551442 -45829079 + MLT2B3 LTR ERVL 1 552 -2 394 249 94 42 chr15 55551443 55551656 -45828865 - MER2 DNA MER2_type -1 344 121 1799 163 0 29 chr15 55551656 55551962 -45828559 + AluJb SINE Alu 1 297 -15 2301 107 0 3 chr15 55552745 55553045 -45827476 + AluSx SINE Alu 1 299 -13 484 136 262 0 chr15 55553863 55553966 -45826555 - MER2 DNA MER2_type -209 136 7 323 310 77 19 chr15 55554077 55554232 -45826289 - L1M4 LINE L1 -1950 4196 4033 21 0 0 0 chr15 55554232 55554253 -45826268 + AT_rich Low_complexity Low_complexity 1 21 0 503 257 170 14 chr15 55554536 55554754 -45825767 - MIR SINE MIR -1 261 10 1414 142 0 22 chr15 55554822 55555054 -45825467 + AluJb SINE Alu 86 312 0 2028 168 30 0 chr15 55555730 55556063 -45824458 + MER2 DNA MER2_type 2 344 0 408 244 131 48 chr15 55556835 55557064 -45823457 + L1MC4 LINE L1 7795 8042 0 602 135 0 87 chr15 55557166 55557270 -45823251 + AluJb SINE Alu 24 118 -194 446 266 101 45 chr15 55557794 55558003 -45822518 + MIR SINE MIR 45 261 -1 2208 72 0 38 chr15 55559544 55559865 -45820656 + AluY SINE Alu 1 310 0 22 35 0 0 chr15 55559870 55559899 -45820622 + AT_rich Low_complexity Low_complexity 1 29 0 186 346 84 0 chr15 55560290 55560397 -45820124 - L2 LINE L2 -12 3301 3186 1916 146 13 0 chr15 55560450 55560751 -45819770 + AluSx SINE Alu 1 305 -7 779 200 0 15 chr15 55560888 55561023 -45819498 - AluJo SINE Alu -178 134 2 23 0 0 0 chr15 55561281 55561304 -45819217 + AT_rich Low_complexity Low_complexity 1 23 0 243 140 80 20 chr15 55562602 55562652 -45817869 + Tigger5 DNA MER2_type 2265 2317 -6 407 247 22 0 chr15 55562658 55562747 -45817774 - Tigger5 DNA MER2_type -2215 108 18 230 91 45 23 chr15 55562760 55562804 -45817717 + Tigger5 DNA MER2_type 2239 2283 -40 1251 179 5 5 chr15 55563177 55563400 -45817121 + AluJb SINE Alu 86 308 -4 2355 80 0 10 chr15 55563924 55564224 -45816297 - AluSq SINE Alu -16 297 1 813 179 0 0 chr15 55565045 55565162 -45815359 + FLAM_C SINE Alu 2 118 -25 2360 88 0 0 chr15 55565217 55565511 -45815010 + AluSx SINE Alu 1 294 -18 702 243 70 84 chr15 55566033 55566317 -45814204 - MER102b DNA MER1_type -18 323 44 722 186 0 50 chr15 55566945 55567085 -45813436 + FLAM_C SINE Alu 1 133 0 27 0 0 0 chr15 55567468 55567495 -45813026 + AT_rich Low_complexity Low_complexity 1 27 0 22 70 0 0 chr15 55569739 55569782 -45810739 + GC_rich Low_complexity Low_complexity 1 43 0 192 77 0 0 chr15 55569857 55569883 -45810638 + (CCG)n Simple_repeat Simple_repeat 2 27 0 285 241 60 0 chr15 55570052 55570135 -45810386 + CT-rich Low_complexity Low_complexity 3 90 0 264 59 0 0 chr15 55570965 55570999 -45809522 + (TG)n Simple_repeat Simple_repeat 2 35 0 511 172 11 11 chr15 55571002 55571095 -45809426 - FRAM SINE Alu -10 166 74 216 0 0 0 chr15 55571112 55571136 -45809385 + (TG)n Simple_repeat Simple_repeat 2 25 0 848 157 63 19 chr15 55571139 55571298 -45809223 - FRAM SINE Alu 0 166 1 2298 85 7 3 chr15 55571391 55571686 -45808835 - AluSp SINE Alu -17 296 1 29 28 0 0 chr15 55572143 55572179 -45808342 + AT_rich Low_complexity Low_complexity 1 36 0 2009 99 35 0 chr15 55572179 55572463 -45808058 + AluSx SINE Alu 1 294 -18 364 113 0 0 chr15 55572463 55572516 -45808005 + AluSg/x SINE Alu 135 187 -113 1050 94 0 0 chr15 55572517 55572645 -45807876 + AluSg/x SINE Alu 160 290 -22 198 0 0 0 chr15 55572645 55572667 -45807854 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 906 205 0 0 chr15 55572687 55572843 -45807678 + FRAM SINE Alu 6 161 -15 483 232 17 90 chr15 55573044 55573132 -45807389 + MIR SINE MIR 40 110 -152 1867 147 6 13 chr15 55573132 55573444 -45807077 - AluJb SINE Alu -2 310 1 483 232 17 90 chr15 55573444 55573532 -45806989 + MIR SINE MIR 110 203 -59 801 171 0 23 chr15 55574030 55574159 -45806362 + FLAM_C SINE Alu 3 128 -5 234 316 80 66 chr15 55574380 55574744 -45805777 + L2 LINE L2 1806 2174 -1140 251 341 47 0 chr15 55574775 55574860 -45805661 + L2 LINE L2 3146 3234 -38 669 280 31 36 chr15 55574899 55575124 -45805397 + MIR SINE MIR 39 262 0 340 259 31 37 chr15 55575126 55575288 -45805233 + L2 LINE L2 2283 2443 -871 2354 85 3 13 chr15 55575490 55575797 -45804724 + AluSp SINE Alu 1 304 -9 2133 108 0 20 chr15 55576093 55576399 -45804122 - AluSx SINE Alu -12 300 1 333 286 41 20 chr15 55576707 55576805 -45803716 - MIR SINE MIR -155 107 8 184 347 40 0 chr15 55576823 55576898 -45803623 + L2 LINE L2 2896 2973 -299 1740 146 0 68 chr15 55577035 55577153 -45803368 + AluJo SINE Alu 1 126 -186 2000 137 3 19 chr15 55577153 55577468 -45803053 - AluSx SINE Alu -2 310 1 2077 147 0 0 chr15 55577468 55577768 -45802753 - AluSx SINE Alu -12 300 1 1740 146 0 68 chr15 55577768 55577969 -45802552 + AluJo SINE Alu 124 299 -13 1483 158 39 49 chr15 55578230 55578514 -45802007 - AluJo SINE Alu -31 281 1 403 311 50 6 chr15 55578524 55578685 -45801836 + Charlie8 DNA MER1_type 71 238 -2179 182 200 0 0 chr15 55578980 55579020 -45801501 - L2 LINE L2 0 3313 3274 316 279 96 0 chr15 55579066 55579170 -45801351 - MIR SINE MIR -33 229 116 2133 108 7 17 chr15 55579876 55580011 -45800510 + AluSq SINE Alu 1 136 -177 2069 117 7 36 chr15 55580011 55580320 -45800201 + AluSq SINE Alu 1 300 -13 2133 108 7 17 chr15 55580320 55580481 -45800040 + AluSq SINE Alu 136 294 -19 25 51 0 0 chr15 55580646 55580685 -45799836 + AT_rich Low_complexity Low_complexity 1 39 0 1423 162 5 0 chr15 55580786 55581002 -45799519 - U3 snRNA snRNA 0 217 1 243 195 58 126 chr15 55581016 55581103 -45799418 - MIR SINE MIR -122 140 60 1208 180 19 0 chr15 55581416 55581627 -45798894 + AluJo SINE Alu 85 299 -13 333 336 33 16 chr15 55581629 55581751 -45798770 + MER5A DNA MER1_type 66 189 0 284 173 0 0 chr15 55581846 55581898 -45798623 - HsTC2 DNA Tc2 -2 1896 1845 1484 164 109 4 chr15 55581983 55582271 -45798250 + AluJo SINE Alu 1 315 0 450 0 0 0 chr15 55582439 55582489 -45798032 + (CA)n Simple_repeat Simple_repeat 2 51 0 669 256 128 0 chr15 55582653 55582817 -45797704 - MER5A DNA MER1_type -1 188 4 2341 110 3 0 chr15 55583841 55584151 -45796370 + AluSp SINE Alu 1 311 -2 1832 263 105 60 chr15 55584652 55585092 -45795429 + HAL1 LINE L1 1243 1661 -846 2138 130 0 0 chr15 55585092 55585384 -45795137 + AluSg1 SINE Alu 1 292 -17 2244 120 0 0 chr15 55585384 55585693 -45794828 + AluSc SINE Alu 1 309 0 1832 263 105 60 chr15 55585693 55585705 -45794816 + HAL1 LINE L1 1661 1671 -836 1486 196 13 36 chr15 55585705 55586006 -45794515 + AluJo SINE Alu 1 294 -18 1832 263 105 60 chr15 55586006 55586560 -45793961 + HAL1 LINE L1 1671 2297 -210 894 207 13 0 chr15 55586599 55586749 -45793772 - FRAM SINE Alu -14 152 1 935 200 29 0 chr15 55586831 55587001 -45793520 + FAM SINE Alu 1 175 0 1638 185 43 0 chr15 55587162 55587443 -45793078 + AluJb SINE Alu 1 293 -19 22 0 0 0 chr15 55587443 55587465 -45793056 + AT_rich Low_complexity Low_complexity 1 22 0 2192 114 3 3 chr15 55587986 55588285 -45792236 - AluSp SINE Alu -14 299 1 4180 168 56 64 chr15 55588532 55589494 -45791027 + LTR13 LTR ERVK 1 954 0 1827 97 0 31 chr15 55589524 55589783 -45790738 + AluSg SINE Alu 56 306 -4 2494 53 3 0 chr15 55589866 55590167 -45790354 + AluY SINE Alu 1 302 -9 1428 68 0 0 chr15 55590167 55590344 -45790177 + AluSg/x SINE Alu 134 310 -2 218 317 125 10 chr15 55590403 55590507 -45790014 + L2 LINE L2 3198 3313 0 30 0 0 0 chr15 55591378 55591408 -45789113 + GC_rich Low_complexity Low_complexity 1 30 0 723 150 7 116 chr15 55593482 55593629 -45786892 + FLAM_A SINE Alu 2 132 -1 384 348 118 45 chr15 55594487 55594529 -45785992 - L2 LINE L2 -25 3247 3210 2492 71 0 3 chr15 55594529 55594839 -45785682 + AluSq SINE Alu 1 309 -4 384 348 118 45 chr15 55594839 55595109 -45785412 - L2 LINE L2 -62 3210 2912 924 139 64 0 chr15 55595378 55595550 -45784971 + Charlie1 DNA MER1_type 57 239 -2522 719 153 29 0 chr15 55595534 55595671 -45784850 + Charlie1 DNA MER1_type 2620 2760 -1 * 1822 96 12 8 chr15 55596188 55596437 -45784084 - AluSx SINE Alu -11 301 52 845 161 0 8 chr15 55597066 55597196 -45783325 + FLAM_C SINE Alu 1 129 -4 904 150 0 0 chr15 55597819 55597952 -45782569 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr15 55597953 55597974 -45782547 + AT_rich Low_complexity Low_complexity 1 21 0 472 167 0 0 chr15 55598108 55598186 -45782335 - FLAM_A SINE Alu -1 141 64 1626 166 13 45 chr15 55598951 55599130 -45781391 - AluJb SINE Alu -9 303 137 1547 127 192 8 chr15 55599130 55599390 -45781131 - AluSg1 SINE Alu -1 308 1 1626 166 13 45 chr15 55599390 55599523 -45780998 - AluJb SINE Alu -175 137 1 274 306 7 69 chr15 55600344 55600451 -45780070 - MIR SINE MIR -40 222 125 2317 80 13 3 chr15 55600451 55600752 -45779769 + AluSp SINE Alu 1 304 -9 274 306 7 69 chr15 55600752 55600788 -45779733 - MIR SINE MIR -137 125 88 325 250 60 0 chr15 55601159 55601243 -45779278 + L2 LINE L2 2565 2653 -661 1078 259 87 82 chr15 55601364 55601384 -45779137 - L1MEc LINE L1 -4233 2163 2145 1908 113 0 0 chr15 55601384 55601640 -45778881 - AluSq SINE Alu -19 294 39 1078 259 87 82 chr15 55601640 55602400 -45778121 - L1MEc LINE L1 -4251 2145 1379 1415 174 38 55 chr15 55602414 55602707 -45777814 - AluJo SINE Alu -19 293 6 23 54 0 0 chr15 55602707 55602744 -45777777 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr15 55602746 55602766 -45777755 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1899 149 7 3 chr15 55602768 55603050 -45777471 - AluJo SINE Alu -27 285 3 1089 288 44 31 chr15 55603057 55603512 -45777009 - L1MEc LINE L1 -5763 633 173 239 322 43 9 chr15 55603645 55603760 -45776761 - L1MC4 LINE L1 -161 7881 7763 1037 91 0 0 chr15 55603763 55603895 -45776626 - AluSg/x SINE Alu -9 301 170 739 181 0 0 chr15 55603896 55604012 -45776509 - AluJo/FLAM SINE Alu -186 116 1 723 150 7 116 chr15 55606575 55606722 -45773799 + FLAM_A SINE Alu 2 132 -1 402 348 118 45 chr15 55607581 55607623 -45772898 - L2 LINE L2 -25 3247 3210 2479 71 0 3 chr15 55607623 55607933 -45772588 + AluSq SINE Alu 1 309 -4 402 348 118 45 chr15 55607933 55608203 -45772318 - L2 LINE L2 -62 3210 2912 839 139 64 0 chr15 55608472 55608644 -45771877 + Charlie1 DNA MER1_type 57 239 -2522 654 148 30 0 chr15 55608630 55608765 -45771756 + Charlie1 DNA MER1_type 2622 2760 -1 * 1826 96 12 8 chr15 55609282 55609531 -45770990 - AluSx SINE Alu -11 301 52 783 163 0 8 chr15 55610162 55610291 -45770230 + FLAM_C SINE Alu 1 128 -5 866 143 0 0 chr15 55610914 55611047 -45769474 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr15 55611048 55611069 -45769452 + AT_rich Low_complexity Low_complexity 1 21 0 435 167 0 0 chr15 55611203 55611281 -45769240 - FLAM_A SINE Alu -1 141 64 1677 166 13 45 chr15 55612046 55612225 -45768296 - AluJb SINE Alu -9 303 137 1545 127 193 8 chr15 55612225 55612484 -45768037 - AluSg1 SINE Alu -2 307 1 1677 166 13 45 chr15 55612484 55612617 -45767904 - AluJb SINE Alu -175 137 1 310 361 10 52 chr15 55613438 55613545 -45766976 - MIR SINE MIR -40 222 125 2327 76 13 3 chr15 55613545 55613846 -45766675 + AluSp SINE Alu 1 304 -9 310 361 10 52 chr15 55613846 55613932 -45766589 - MIR SINE MIR -137 125 37 309 324 29 0 chr15 55614254 55614356 -45766165 + L2 LINE L2 2568 2672 -642 2176 115 0 7 chr15 55614476 55614772 -45765749 - AluSq SINE Alu -19 294 1 2371 92 0 0 chr15 55615043 55615347 -45765174 + AluSg1 SINE Alu 1 304 -5 260 247 153 0 chr15 55616185 55616270 -45764251 + MIR SINE MIR 88 185 -77 2270 115 0 3 chr15 55616335 55616648 -45763873 - AluSx SINE Alu 0 312 1 1283 163 40 83 chr15 55617081 55617358 -45763163 + AluJb SINE Alu 3 267 -45 1825 153 7 10 chr15 55617471 55617759 -45762762 + AluJb SINE Alu 1 287 -25 1819 172 0 46 chr15 55618036 55618362 -45762159 - AluJo SINE Alu -1 311 1 231 36 0 0 chr15 55618563 55618591 -45761930 + (A)n Simple_repeat Simple_repeat 1 28 0 887 201 5 34 chr15 55618808 55619012 -45761509 - MER58A DNA MER1_type 0 224 27 463 75 11 85 chr15 55619037 55619114 -45761407 + L1MC2 LINE L1 6258 6328 -16 1872 131 32 7 chr15 55619114 55619397 -45761124 - AluSx SINE Alu -22 290 1 463 75 11 85 chr15 55619397 55619413 -45761108 + L1MC2 LINE L1 6328 6344 0 346 253 44 98 chr15 55620015 55620240 -45760281 - L1ME3A LINE L1 -1 6169 5957 2080 138 0 0 chr15 55620261 55620557 -45759964 - AluSq SINE Alu -17 296 1 222 91 0 0 chr15 55620559 55620592 -45759929 + (T)n Simple_repeat Simple_repeat 1 33 0 816 117 0 0 chr15 55620610 55620721 -45759800 - AluSq/x SINE Alu -202 111 1 318 40 40 0 chr15 55620802 55620852 -45759669 + MADE1 DNA Mariner 29 80 0 2281 90 3 3 chr15 55620884 55621183 -45759338 + AluY SINE Alu 1 299 -12 364 257 0 0 chr15 55621757 55621831 -45758690 + MER5C DNA MER1_type 1 74 -250 25 0 0 50 chr15 55622138 55622156 -45758365 + AT_rich Low_complexity Low_complexity 1 18 -20 2129 136 0 7 chr15 55622156 55622451 -45758070 + AluSx SINE Alu 1 293 -19 25 0 0 50 chr15 55622451 55622472 -45758049 + AT_rich Low_complexity Low_complexity 18 38 0 2323 75 0 3 chr15 55622484 55622779 -45757742 + AluY SINE Alu 1 294 -17 2014 129 3 39 chr15 55622885 55623061 -45757460 - AluJb SINE Alu -12 300 138 2377 90 3 6 chr15 55623061 55623373 -45757148 - AluSp SINE Alu 0 313 3 2014 129 3 39 chr15 55623373 55623506 -45757015 - AluJb SINE Alu -174 138 2 208 135 0 0 chr15 55623656 55623693 -45756828 + (TTTTTA)n Simple_repeat Simple_repeat 3 39 0 1649 265 120 19 chr15 55623760 55624326 -45756195 - L2 LINE L2 -385 2929 2421 2292 85 0 3 chr15 55624326 55624621 -45755900 + AluY SINE Alu 1 294 -17 1649 265 120 19 chr15 55624621 55624644 -45755877 - L2 LINE L2 -893 2421 2402 207 0 0 0 chr15 55624644 55624667 -45755854 + (TA)n Simple_repeat Simple_repeat 1 23 0 1649 265 120 19 chr15 55624667 55624691 -45755830 - L2 LINE L2 -912 2402 2253 525 222 9 0 chr15 55624693 55624801 -45755720 + MER3 DNA MER1_type 1 109 -100 1356 160 0 9 chr15 55624806 55625031 -45755490 + AluJb SINE Alu 64 286 -26 528 16 0 0 chr15 55625033 55625094 -45755427 + (TG)n Simple_repeat Simple_repeat 2 62 0 438 161 65 0 chr15 55625094 55625187 -45755334 + MER3 DNA MER1_type 110 208 -1 273 216 0 0 chr15 55625143 55625194 -45755327 - MER3 DNA MER1_type -117 92 42 * 1069 260 143 0 chr15 55625195 55625553 -45754968 - L2 LINE L2 -1063 2251 1843 1840 161 46 23 chr15 55625558 55625744 -45754777 + L1MB8 LINE L1 5512 5692 -492 2232 117 0 0 chr15 55625744 55626043 -45754478 + AluSg SINE Alu 1 299 -11 1840 161 46 23 chr15 55626043 55626248 -45754273 + L1MB8 LINE L1 5692 5912 -272 1071 174 25 25 chr15 55626248 55626444 -45754077 + AluJo SINE Alu 106 301 -11 754 124 0 48 chr15 55626444 55626589 -45753932 + L1MB8 LINE L1 5934 6071 -107 1847 127 14 14 chr15 55626593 55626907 -45753614 + AluSx SINE Alu 6 312 0 249 282 183 34 chr15 55627130 55627453 -45753068 - L2 LINE L2 -1234 2080 1710 2090 125 7 0 chr15 55627783 55628079 -45752442 - AluSx SINE Alu -14 298 1 1203 131 88 78 chr15 55628274 55628482 -45752039 + MER33 DNA MER1_type 1 215 -2370 1804 190 0 3 chr15 55628482 55628782 -45751739 + AluJb SINE Alu 2 300 -12 1203 131 88 78 chr15 55628782 55628893 -45751628 + MER33 DNA MER1_type 215 323 -1 209 245 0 3 chr15 55629180 55629231 -45751290 - MIR SINE MIR -57 151 102 2023 142 0 32 chr15 55629363 55629679 -45750842 - AluSg SINE Alu -2 308 3 2245 118 0 0 chr15 55629715 55630011 -45750510 - AluSq SINE Alu -16 297 2 2484 42 0 39 chr15 55630542 55630850 -45749671 + AluY SINE Alu 1 296 -15 21 57 0 0 chr15 55631264 55631299 -45749222 + AT_rich Low_complexity Low_complexity 1 35 0 1194 143 0 6 chr15 55631939 55632107 -45748414 + AluJb SINE Alu 133 299 -13 2215 125 0 0 chr15 55632230 55632527 -45747994 - AluSx SINE Alu -15 297 1 313 156 0 0 chr15 55632554 55632610 -45747911 + Alu SINE Alu 1 49 -253 267 67 0 0 chr15 55632609 55632654 -45747867 + FAM SINE Alu 135 179 0 * 2024 75 86 0 chr15 55632903 55633171 -45747350 - AluSq SINE Alu -22 291 1 342 255 102 0 chr15 55633366 55633523 -45746998 + L1ME4a LINE L1 5949 6121 0 571 188 87 29 chr15 55633702 55633840 -45746681 - MER58C DNA MER1_type -8 207 62 2186 120 0 10 chr15 55634438 55634746 -45745775 + AluSc SINE Alu 1 305 -4 1907 164 3 0 chr15 55634788 55635075 -45745446 + AluSx SINE Alu 1 288 -24 1996 63 0 73 chr15 55635080 55635367 -45745154 + AluY SINE Alu 1 266 -45 2044 140 10 3 chr15 55635781 55636089 -45744432 + AluJb SINE Alu 3 312 0 621 247 0 27 chr15 55636100 55636246 -45744275 + FLAM_A SINE Alu 1 142 0 31 44 0 0 chr15 55636760 55636805 -45743716 + AT_rich Low_complexity Low_complexity 1 45 0 1273 113 16 0 chr15 55637048 55637234 -45743287 + AluY SINE Alu 1 189 -122 475 428 0 0 chr15 55637335 55637515 -45743006 + C-rich Low_complexity Low_complexity 1 180 0 1017 199 80 12 chr15 55637564 55637815 -45742706 - AluSx SINE Alu -39 273 6 886 195 0 0 chr15 55637818 55637977 -45742544 - FRAM SINE Alu -9 167 9 206 359 0 0 chr15 55638654 55638718 -45741803 + L2 LINE L2 3201 3264 -8 2431 48 0 29 chr15 55638817 55639129 -45741392 - AluY SINE Alu -8 303 1 396 309 137 32 chr15 55639196 55639454 -45741067 + L2 LINE L2 2782 3064 -249 240 167 0 0 chr15 55639486 55639534 -45740987 + CT-rich Low_complexity Low_complexity 4 51 0 2390 153 38 25 chr15 55639544 55640021 -45740500 - L1MC1 LINE L1 -37 6296 5814 2459 84 0 0 chr15 55640062 55640370 -45740151 - AluY SINE Alu -3 308 1 1799 162 54 8 chr15 55640372 55640397 -45740124 - L1MB2 LINE L1 -117 6054 6032 1761 176 7 7 chr15 55640397 55640675 -45739846 + AluJo SINE Alu 2 279 -33 1799 162 54 8 chr15 55640675 55641038 -45739483 - L1MB2 LINE L1 -139 6032 5648 477 219 46 46 chr15 55641179 55641238 -45739283 + L2 LINE L2 3159 3217 -96 1781 139 12 0 chr15 55641238 55641496 -45739025 - AluSx SINE Alu -5 307 47 477 219 46 46 chr15 55641496 55641587 -45738934 + L2 LINE L2 3216 3309 -4 1290 272 81 49 chr15 55642126 55642655 -45737866 - MER77 LTR ERV1 -6 599 54 1448 267 81 8 chr15 55642827 55643295 -45737226 - LTR33 LTR ERVL -8 513 12 3941 181 67 47 chr15 55643550 55643623 -45736898 - L1MD1 LINE L1 0 6242 6172 2184 126 0 3 chr15 55643623 55643932 -45736589 + AluSg SINE Alu 3 310 0 3941 181 67 47 chr15 55643932 55644044 -45736477 - L1MD1 LINE L1 -70 6172 6064 1852 171 7 0 chr15 55644044 55644356 -45736165 + AluJb SINE Alu 1 314 0 3941 181 67 47 chr15 55644356 55644680 -45735841 - L1MD1 LINE L1 -178 6064 5748 2044 133 0 3 chr15 55644680 55644965 -45735556 + AluSx SINE Alu 2 285 -27 3941 181 67 47 chr15 55644965 55645049 -45735472 - L1MD1 LINE L1 -494 5748 5667 780 162 0 0 chr15 55645049 55645200 -45735321 - FLAM_A SINE Alu 0 154 4 3941 181 67 47 chr15 55645200 55645394 -45735127 - L1MD1 LINE L1 -575 5667 5478 2133 122 3 13 chr15 55645394 55645705 -45734816 - AluSq SINE Alu -5 308 1 3941 181 67 47 chr15 55645705 55645843 -45734678 - L1MD1 LINE L1 -764 5478 5344 1823 167 30 0 chr15 55645843 55646143 -45734378 - AluJo SINE Alu -3 309 1 3941 181 67 47 chr15 55646143 55646270 -45734251 - L1MD1 LINE L1 -898 5344 5221 698 154 0 84 chr15 55646270 55646413 -45734108 - FLAM_C SINE Alu 0 133 3 3941 181 67 47 chr15 55646413 55646699 -45733822 - L1MD1 LINE L1 -1021 5221 4872 2002 140 10 0 chr15 55646813 55647120 -45733401 - AluJb SINE Alu -2 310 1 2327 95 10 0 chr15 55647146 55647450 -45733071 - AluSc SINE Alu -2 307 1 282 240 306 8 chr15 55647457 55647578 -45732943 + L2 LINE L2 3154 3310 -3 982 192 29 0 chr15 55647871 55648043 -45732478 - FRAM SINE Alu 0 176 1 248 259 59 37 chr15 55648146 55648281 -45732240 + L1ME LINE L1 4882 5019 -1127 915 186 13 0 chr15 55648281 55648437 -45732084 + FAM SINE Alu 1 158 -17 1186 250 78 43 chr15 55648568 55648920 -45731601 + L1ME LINE L1 5123 5461 -701 2386 74 13 0 chr15 55648920 55649219 -45731302 + AluSx SINE Alu 5 307 -5 1186 250 78 43 chr15 55649219 55649541 -45730980 + L1ME LINE L1 5461 5823 -339 349 284 77 39 chr15 55649542 55649697 -45730824 + L2 LINE L2 3121 3281 -32 1667 198 11 0 chr15 55649750 55650028 -45730493 - AluJo SINE Alu -31 281 1 1933 121 48 7 chr15 55650124 55650413 -45730108 - AluSq SINE Alu -12 301 1 1001 183 12 0 chr15 55650454 55650618 -45729903 - AluJo SINE Alu -15 297 132 1728 182 4 0 chr15 55650639 55650914 -45729607 + AluJb SINE Alu 1 276 -36 257 105 0 0 chr15 55650914 55650952 -45729569 + Alu SINE Alu 231 268 -32 681 211 0 8 chr15 55650986 55651119 -45729402 - AluJo SINE Alu -169 133 2 2023 135 3 0 chr15 55651456 55651765 -45728756 + AluSx SINE Alu 1 310 0 1345 89 0 0 chr15 55651765 55651933 -45728588 + AluSg/x SINE Alu 130 297 -13 251 167 0 0 chr15 55652101 55652143 -45728378 - MER5B DNA MER1_type -2 176 135 231 219 14 14 chr15 55652283 55652356 -45728165 + Charlie7 DNA MER1_type 37 109 -2503 41 0 0 0 chr15 55652404 55652445 -45728076 + AT_rich Low_complexity Low_complexity 1 41 0 21 71 0 0 chr15 55653071 55653113 -45727408 + AT_rich Low_complexity Low_complexity 1 42 0 2115 127 7 13 chr15 55653440 55653747 -45726774 + AluSx SINE Alu 1 305 -7 1468 90 76 9 chr15 55654601 55654812 -45725709 - AluSp SINE Alu -4 309 85 1630 150 51 15 chr15 55654864 55655166 -45725355 + AluJo SINE Alu 1 312 0 2312 104 7 0 chr15 55656144 55656442 -45724079 - AluSx SINE Alu -12 300 1 288 65 22 0 chr15 55657043 55657089 -45723432 + (TTTG)n Simple_repeat Simple_repeat 2 180 0 1866 134 3 30 chr15 55657089 55657380 -45723141 - AluSx SINE Alu -27 285 1 244 137 59 39 chr15 55657448 55657499 -45723022 - L2 LINE L2 0 3313 3262 27 0 0 0 chr15 55657515 55657542 -45722979 + AT_rich Low_complexity Low_complexity 1 27 0 935 263 65 54 chr15 55657570 55657700 -45722821 - L1MC4 LINE L1 -1 8041 7914 2337 106 3 0 chr15 55657700 55658003 -45722518 - AluSp SINE Alu -9 304 1 935 263 65 54 chr15 55658003 55658320 -45722201 - L1MC4 LINE L1 -128 7914 7589 438 169 0 0 chr15 55658321 55658410 -45722111 + CT-rich Low_complexity Low_complexity 4 92 0 2452 214 82 40 chr15 55658413 55658959 -45721562 - L1MC4 LINE L1 -442 7600 7014 1998 82 45 4 chr15 55658959 55659226 -45721295 - AluY SINE Alu -33 278 1 2452 214 82 40 chr15 55659226 55659412 -45721109 - L1MC4 LINE L1 -1028 7014 6837 1202 68 0 7 chr15 55659425 55659572 -45720949 + AluSq/x SINE Alu 1 146 -167 484 137 0 0 chr15 55659572 55659645 -45720876 + AluSc SINE Alu 221 293 -16 207 323 0 0 chr15 55659911 55659976 -45720545 + A-rich Low_complexity Low_complexity 1 65 0 219 229 73 42 chr15 55660164 55660209 -45720312 + L2 LINE L2 2142 2184 -1130 2099 55 48 4 chr15 55660209 55660506 -45720015 - AluY SINE Alu 0 309 1 219 229 73 42 chr15 55660506 55660555 -45719966 + L2 LINE L2 2184 2240 -1074 2509 260 157 36 chr15 55660559 55661015 -45719506 + L2 LINE L2 247 646 -2668 342 0 0 0 chr15 55661015 55661053 -45719468 + (CA)n Simple_repeat Simple_repeat 2 39 0 2509 260 157 36 chr15 55661053 55661767 -45718754 + L2 LINE L2 646 1559 -1755 1274 137 11 99 chr15 55661811 55661923 -45718598 - L1MB8 LINE L1 -6 6172 6094 1844 127 14 14 chr15 55661923 55662237 -45718284 - AluSx SINE Alu 0 312 6 1274 137 11 99 chr15 55662237 55662386 -45718135 - L1MB8 LINE L1 -84 6094 5934 1052 174 25 25 chr15 55662386 55662582 -45717939 - AluJo SINE Alu -11 301 106 2026 161 46 23 chr15 55662582 55662787 -45717734 - L1MB8 LINE L1 -272 5912 5713 2231 117 0 0 chr15 55662787 55663086 -45717435 - AluSg SINE Alu -11 299 1 2026 161 46 23 chr15 55663086 55663272 -45717249 - L1MB8 LINE L1 -471 5713 5512 1072 257 143 0 chr15 55663277 55663635 -45716886 + L2 LINE L2 1843 2251 -1063 482 151 65 0 chr15 55663643 55663736 -45716785 - MER3 DNA MER1_type -1 208 110 456 19 0 0 chr15 55663736 55663789 -45716732 + (CA)n Simple_repeat Simple_repeat 2 54 0 1369 138 9 18 chr15 55663791 55664016 -45716505 - AluJb SINE Alu -26 286 64 572 222 9 0 chr15 55664021 55664129 -45716392 - MER3 DNA MER1_type -100 109 1 1601 273 119 18 chr15 55664131 55664155 -45716366 + L2 LINE L2 2253 2273 -1041 369 0 0 0 chr15 55664155 55664196 -45716325 + (TA)n Simple_repeat Simple_repeat 1 41 0 1601 273 119 18 chr15 55664196 55664219 -45716302 + L2 LINE L2 2273 2292 -1022 2302 85 0 3 chr15 55664219 55664514 -45716007 - AluY SINE Alu -17 294 1 1601 273 119 18 chr15 55664514 55665080 -45715441 + L2 LINE L2 2292 2929 -385 208 135 0 0 chr15 55665147 55665184 -45715337 + (TAAAAA)n Simple_repeat Simple_repeat 3 39 0 1209 62 0 7 chr15 55665334 55665480 -45715041 + AluSq/x SINE Alu 2 146 -167 557 96 0 0 chr15 55665480 55665553 -45714968 + AluSc SINE Alu 221 293 -16 2077 78 74 3 chr15 55665954 55666237 -45714284 - AluY SINE Alu -8 303 1 23 0 0 0 chr15 55666570 55666593 -45713928 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 55666736 55666758 -45713763 + AT_rich Low_complexity Low_complexity 1 22 0 361 274 29 0 chr15 55666771 55666873 -45713648 + MIR SINE MIR 48 152 -56 3593 189 20 14 chr15 55667508 55667746 -45712775 + MER82 DNA MER2_type 1 236 -417 1421 151 49 0 chr15 55667746 55667971 -45712550 + MER46A DNA MER2_type 1 236 0 3593 189 20 14 chr15 55667971 55668381 -45712140 + MER82 DNA MER2_type 236 653 0 243 0 0 0 chr15 55668398 55668425 -45712096 + (TG)n Simple_repeat Simple_repeat 2 28 0 24 32 0 0 chr15 55668425 55668456 -45712065 + AT_rich Low_complexity Low_complexity 1 31 0 2348 87 3 7 chr15 55669608 55669908 -45710613 - AluSp SINE Alu -12 301 3 2285 94 13 0 chr15 55669910 55670208 -45710313 - AluSp SINE Alu -11 302 1 23 0 0 0 chr15 55670268 55670291 -45710230 + AT_rich Low_complexity Low_complexity 1 23 0 6664 107 25 11 chr15 55670724 55671680 -45708841 - LTR5 LTR ERVK 0 969 1 688 300 0 17 chr15 55671809 55671989 -45708532 + MER5B DNA MER1_type 1 177 -1 439 304 38 116 chr15 55672436 55672754 -45707767 - L2 LINE L2 0 3313 3055 2251 102 0 0 chr15 55672754 55673038 -45707483 + AluSq SINE Alu 1 284 -29 439 304 38 116 chr15 55673038 55673271 -45707250 - L2 LINE L2 -258 3055 2805 2244 75 7 4 chr15 55673283 55673593 -45706928 - AluY SINE Alu 0 311 1 430 107 0 80 chr15 55673618 55673693 -45706828 - AluJ/FRAM SINE Alu -12 300 232 323 174 112 47 chr15 55673700 55673810 -45706711 - L1MC4 LINE L1 -298 7744 7528 1575 205 10 13 chr15 55673994 55674301 -45706220 - AluJo SINE Alu -4 308 3 21 0 0 0 chr15 55674651 55674672 -45705849 + AT_rich Low_complexity Low_complexity 1 21 0 1247 188 4 32 chr15 55674674 55674924 -45705597 + AluJo SINE Alu 1 243 -69 1681 196 0 10 chr15 55675080 55675381 -45705140 + AluJo SINE Alu 14 311 -1 2328 103 0 0 chr15 55675504 55675796 -45704725 + AluSx SINE Alu 6 297 -15 2011 141 20 0 chr15 55675966 55676264 -45704257 - AluSx SINE Alu -8 304 1 38 0 0 0 chr15 55676469 55676507 -45704014 + AT_rich Low_complexity Low_complexity 1 38 0 2025 139 0 0 chr15 55676700 55677015 -45703506 - AluSx SINE Alu 0 315 1 2181 126 3 3 chr15 55677206 55677516 -45703005 - AluSx SINE Alu -2 310 1 2222 75 0 41 chr15 55678012 55678351 -45702170 - AluY SINE Alu 0 327 1 2184 121 6 10 chr15 55678353 55678666 -45701855 - AluSx SINE Alu 0 312 1 288 217 0 0 chr15 55678704 55678750 -45701771 + AluJ/monomer SINE Alu 1 46 -256 2257 119 3 0 chr15 55678776 55679088 -45701433 - AluSq SINE Alu 0 313 1 470 286 36 7 chr15 55680116 55680256 -45700265 - MIR SINE MIR -40 222 79 2117 134 0 3 chr15 55680543 55680835 -45699686 - AluSx SINE Alu -21 291 1 1789 78 9 0 chr15 55681009 55681240 -45699281 + AluY SINE Alu 72 304 -7 26 0 0 0 chr15 55681293 55681319 -45699202 + AT_rich Low_complexity Low_complexity 1 26 0 2504 41 0 41 chr15 55681650 55681967 -45698554 + AluY SINE Alu 1 304 -7 2219 101 10 19 chr15 55682020 55682328 -45698193 + AluSx SINE Alu 1 305 -7 6460 130 12 23 chr15 55682328 55682508 -45698013 + L1MA2 LINE L1 5195 5376 -928 2165 139 0 0 chr15 55682508 55682810 -45697711 + AluSx SINE Alu 1 302 -10 6460 130 12 23 chr15 55682810 55683696 -45696825 + L1MA2 LINE L1 5376 6252 -52 2329 76 10 20 chr15 55683696 55684000 -45696521 + AluY SINE Alu 1 301 -10 6460 130 12 23 chr15 55684000 55684053 -45696468 + L1MA2 LINE L1 6252 6304 0 549 300 144 19 chr15 55685033 55685303 -45695218 - L2 LINE L2 -490 2824 2521 288 303 131 33 chr15 55685648 55685770 -45694751 - L2 LINE L2 -5 3267 3134 2407 67 0 10 chr15 55685848 55686146 -45694375 + AluY SINE Alu 3 297 -14 2127 127 3 0 chr15 55686311 55686603 -45693918 + AluSx SINE Alu 1 293 -19 2156 97 0 17 chr15 55686603 55686901 -45693620 + AluSc SINE Alu 1 293 -16 2042 128 17 0 chr15 55687129 55687419 -45693102 - AluJb SINE Alu -17 295 1 262 241 166 60 chr15 55687615 55687934 -45692587 + L1ME4a LINE L1 5757 6109 -12 1522 202 14 11 chr15 55687987 55688269 -45692252 - AluJb SINE Alu -29 283 1 2147 134 0 0 chr15 55688357 55688656 -45691865 - AluSx SINE Alu -13 299 1 1397 144 0 30 chr15 55688763 55689041 -45691480 - AluJo SINE Alu 0 354 84 1972 135 7 14 chr15 55689389 55689686 -45690835 + AluSx SINE Alu 6 300 -12 438 305 112 30 chr15 55689924 55690157 -45690364 + MIR SINE MIR 2 253 -9 340 135 0 0 chr15 55690303 55690381 -45690140 - Alu SINE Alu 0 326 249 2143 110 4 4 chr15 55690485 55690766 -45689755 - AluSx SINE Alu -31 281 1 2217 100 13 7 chr15 55691057 55691356 -45689165 + AluSg SINE Alu 6 306 -4 1980 112 0 4 chr15 55691511 55691780 -45688741 + AluSg SINE Alu 36 303 -7 2286 82 7 3 chr15 55693152 55693445 -45687076 + AluSx SINE Alu 1 294 -18 2266 94 0 0 chr15 55694784 55695072 -45685449 + AluSx SINE Alu 17 304 -8 23 0 0 0 chr15 55695417 55695440 -45685081 + AT_rich Low_complexity Low_complexity 1 23 0 2338 88 0 19 chr15 55697808 55698116 -45682405 + AluSx SINE Alu 1 302 -10 21 57 0 0 chr15 55699091 55699126 -45681395 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr15 55699365 55699394 -45681127 + AT_rich Low_complexity Low_complexity 1 29 0 1074 158 0 6 chr15 55699602 55699766 -45680755 + AluJb SINE Alu 129 291 -21 2430 198 38 9 chr15 55699771 55700296 -45680225 + L1MB8 LINE L1 5496 6035 -143 226 73 0 73 chr15 55700296 55700337 -45680184 + Alu SINE Alu 1 38 -263 * 285 151 0 0 chr15 55700332 55700385 -45680136 + AluSp/q SINE Alu 246 298 -5 668 160 42 42 chr15 55700385 55700529 -45679992 + L1MB8 LINE L1 6023 6166 -12 330 26 0 0 chr15 55700539 55700578 -45679943 + (TG)n Simple_repeat Simple_repeat 2 40 0 1917 112 3 44 chr15 55700578 55700873 -45679648 - AluSx SINE Alu -21 291 9 1519 166 101 0 chr15 55700899 55701176 -45679345 - AluJo SINE Alu -7 305 1 1995 250 35 48 chr15 55701207 55701399 -45679122 + L1ME2 LINE L1 3744 3937 -2209 1784 110 47 63 chr15 55701399 55701699 -45678822 - AluSg SINE Alu -15 295 1 1995 250 35 48 chr15 55701699 55702134 -45678387 + L1ME2 LINE L1 3937 4363 -1783 237 224 0 0 chr15 55702254 55702303 -45678218 - MIR SINE MIR -159 103 55 456 244 195 24 chr15 55703008 55703457 -45677064 - MER77 LTR ERV1 -8 597 37 2555 60 0 9 chr15 55703474 55703790 -45676731 - AluSq SINE Alu 0 313 1 245 253 60 80 chr15 55703814 55703964 -45676557 + MER58A DNA MER1_type 1 147 0 484 258 15 0 chr15 55704035 55704099 -45676422 - Charlie5 DNA MER1_type -19 2566 2504 2592 35 0 16 chr15 55704099 55704415 -45676106 + AluY SINE Alu 1 311 0 484 258 15 0 chr15 55704415 55704482 -45676039 - Charlie5 DNA MER1_type -81 2504 2433 233 209 134 75 chr15 55704517 55704704 -45675817 - L2 LINE L2 -296 3017 2820 1415 246 59 30 chr15 55705059 55705530 -45674991 - MLT1D LTR MaLR -20 485 1 348 240 16 50 chr15 55705851 55705972 -45674549 + L1ME2 LINE L1 4432 4548 -1598 1694 125 0 97 chr15 55705972 55706321 -45674200 - AluSx SINE Alu 0 319 1 338 216 26 52 chr15 55706322 55706373 -45674148 + L1ME2 LINE L1 4888 4939 -1207 2672 118 64 10 chr15 55706373 55706779 -45673742 + MSTA LTR MaLR 1 428 0 338 216 26 52 chr15 55706779 55706843 -45673678 + L1ME2 LINE L1 4939 5000 -1146 1755 111 0 0 chr15 55706843 55707087 -45673434 - AluSg/x SINE Alu 0 312 69 2375 87 3 0 chr15 55707713 55708011 -45672510 + AluSp SINE Alu 1 299 -14 501 284 61 52 chr15 55708238 55708307 -45672214 + L1PB1 LINE L1 5285 5352 -799 2172 83 0 28 chr15 55708307 55708596 -45671925 + AluSg SINE Alu 1 281 -29 358 24 0 0 chr15 55708596 55708638 -45671883 + (TAA)n Simple_repeat Simple_repeat 2 180 0 501 284 61 52 chr15 55708638 55709454 -45671067 + L1PB1 LINE L1 5352 5880 -271 2801 198 68 31 chr15 55708638 55708723 -45671798 + L1ME2 LINE L1 5348 5428 -736 2080 114 24 3 chr15 55708723 55709020 -45671501 + AluSq SINE Alu 1 303 -10 2801 198 68 31 chr15 55709020 55709712 -45670809 + L1ME2 LINE L1 5428 6154 -10 293 176 118 10 chr15 55709710 55709812 -45670709 + L1M4 LINE L1 4317 4429 -1717 * 410 93 47 35 chr15 55709826 55709912 -45670609 + MER97b DNA MER1_type? 533 619 -434 2287 112 0 3 chr15 55709912 55710208 -45670313 + AluSc SINE Alu 1 295 -14 269 233 0 0 chr15 55710234 55710307 -45670214 + MER97c DNA MER1_type? 606 678 -412 2257 102 0 0 chr15 55710330 55710623 -45669898 - AluSg1 SINE Alu -16 293 1 784 143 48 0 chr15 55710757 55710883 -45669638 - AluJb SINE Alu -179 133 2 217 236 164 73 chr15 55711102 55711212 -45669309 + MER5B DNA MER1_type 2 121 -57 2209 94 7 0 chr15 55711264 55711552 -45668969 - AluSg SINE Alu -20 290 1 2347 103 0 0 chr15 55711562 55711872 -45668649 - AluSx SINE Alu -2 310 1 211 279 170 20 chr15 55711981 55712128 -45668393 - MIR SINE MIR -44 218 50 1938 164 7 7 chr15 55712576 55712881 -45667640 + AluSx SINE Alu 1 305 -7 954 244 166 24 chr15 55713326 55713512 -45667009 - L2 LINE L2 -2 3311 3153 2073 102 20 10 chr15 55713512 55713806 -45666715 - AluSq SINE Alu -16 297 1 954 244 166 24 chr15 55713806 55714042 -45666479 - L2 LINE L2 -160 3153 2829 1804 104 0 4 chr15 55714938 55715179 -45665342 + AluSg SINE Alu 56 295 -15 2265 98 7 3 chr15 55715189 55715495 -45665026 + AluSg SINE Alu 1 307 -3 358 276 22 37 chr15 55715755 55715889 -45664632 + MIR SINE MIR 121 252 -10 642 308 36 5 chr15 55717690 55717885 -45662636 - MIR SINE MIR -34 228 28 644 146 18 195 chr15 55717928 55718094 -45662427 + MER5A DNA MER1_type 1 118 -71 1615 169 0 30 chr15 55718094 55718389 -45662132 - AluJb SINE Alu -26 286 1 644 146 18 195 chr15 55718389 55718448 -45662073 + MER5A DNA MER1_type 118 186 -3 970 130 0 59 chr15 55718561 55718730 -45661791 + AluSg/x SINE Alu 135 293 -17 1762 149 17 14 chr15 55718765 55719061 -45661460 + AluSx SINE Alu 1 297 -15 740 171 0 0 chr15 55719301 55719418 -45661103 - AluJb SINE Alu -195 117 1 2165 118 7 0 chr15 55719711 55720017 -45660504 + AluSx SINE Alu 3 310 -2 905 80 0 0 chr15 55720490 55720602 -45659919 + AluSq/x SINE Alu 1 112 -200 3261 191 20 14 chr15 55721777 55722015 -45658506 + MER82 DNA MER2_type 1 236 -417 1291 156 49 0 chr15 55722015 55722240 -45658281 + MER46A DNA MER2_type 1 236 0 3261 191 20 14 chr15 55722240 55722650 -45657871 + MER82 DNA MER2_type 236 653 0 279 0 0 0 chr15 55722667 55722698 -45657823 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 297 0 0 0 chr15 55722697 55722730 -45657791 + (TA)n Simple_repeat Simple_repeat 1 33 0 1442 154 101 11 chr15 55723795 55724062 -45656459 + AluSg SINE Alu 1 291 -19 199 333 118 25 chr15 55724317 55724521 -45656000 - L2 LINE L2 -1231 2083 1861 2272 119 0 0 chr15 55724901 55725211 -45655310 + AluSx SINE Alu 1 310 -2 2079 127 0 10 chr15 55725580 55725880 -45654641 + AluSq SINE Alu 1 297 -16 2251 99 0 0 chr15 55726099 55726383 -45654138 - AluSc SINE Alu -25 284 1 1519 189 10 17 chr15 55726405 55726701 -45653820 - AluJo SINE Alu -18 294 1 1817 145 34 0 chr15 55727283 55727586 -45652935 + AluSg SINE Alu 5 316 0 432 0 0 0 chr15 55727985 55728033 -45652488 + (TG)n Simple_repeat Simple_repeat 2 49 0 2064 113 0 39 chr15 55728034 55728345 -45652176 - AluSx SINE Alu -13 299 1 29 0 0 0 chr15 55728589 55728618 -45651903 + AT_rich Low_complexity Low_complexity 1 29 0 1840 168 3 16 chr15 55729637 55729952 -45650569 + AluSx SINE Alu 1 311 -1 182 240 80 20 chr15 55731757 55731807 -45648714 - MIR SINE MIR -132 76 24 1789 207 83 62 chr15 55732911 55733679 -45646842 + MER20B DNA MER1_type 1 784 0 606 230 59 20 chr15 55734313 55734465 -45646056 + MIR SINE MIR 20 177 -85 23 0 0 0 chr15 55735836 55735859 -45644662 + AT_rich Low_complexity Low_complexity 1 23 0 2119 137 0 0 chr15 55736481 55736780 -45643741 - AluSx SINE Alu -13 299 1 1878 163 0 7 chr15 55738057 55738352 -45642169 + AluSx SINE Alu 6 298 -14 180 0 0 0 chr15 55740459 55740479 -45640042 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 192 111 0 0 chr15 55740785 55740821 -45639700 + (A)n Simple_repeat Simple_repeat 1 36 0 25 0 0 0 chr15 55742559 55742584 -45637937 + AT_rich Low_complexity Low_complexity 1 25 0 364 113 42 14 chr15 55743410 55743481 -45637040 + AluJ/FRAM SINE Alu 224 296 -6 688 173 16 16 chr15 55743820 55743947 -45636574 - FLAM_A SINE Alu -6 127 1 1718 142 3 36 chr15 55743966 55744268 -45636253 - AluJo SINE Alu -16 296 5 1111 128 12 103 chr15 55744526 55744631 -45635890 - AluSx SINE Alu -92 220 148 1606 182 7 0 chr15 55744631 55744922 -45635599 - AluSc SINE Alu -16 293 1 1111 128 12 103 chr15 55744922 55745058 -45635463 - AluSx SINE Alu -164 148 1 599 147 165 0 chr15 55745156 55745265 -45635256 - MER5A DNA MER1_type 0 189 63 1250 34 0 0 chr15 55745268 55745416 -45635105 + L1PA4 LINE L1 6000 6147 -8 326 233 27 0 chr15 55745449 55745522 -45634999 - MER5A DNA MER1_type -114 75 1 1873 131 0 28 chr15 55745745 55746035 -45634486 - AluJb SINE Alu -30 282 1 1848 117 55 21 chr15 55746269 55746423 -45634098 - AluSx SINE Alu -12 300 153 2183 119 0 0 chr15 55746423 55746733 -45633788 - AluSg SINE Alu 0 310 1 1848 117 55 21 chr15 55746733 55746868 -45633653 - AluSx SINE Alu -159 153 1 814 153 0 0 chr15 55747145 55747263 -45633258 + FLAM_C SINE Alu 1 118 -25 39 0 0 0 chr15 55747269 55747308 -45633213 + AT_rich Low_complexity Low_complexity 1 39 0 242 159 68 0 chr15 55748368 55748412 -45632109 + L2 LINE L2 3263 3309 -4 1645 175 4 0 chr15 55748977 55749278 -45631243 + AluJb SINE Alu 1 302 0 312 27 0 0 chr15 55749637 55749674 -45630847 + (TG)n Simple_repeat Simple_repeat 2 38 0 2100 147 0 13 chr15 55749686 55749998 -45630523 - AluJb SINE Alu -4 308 1 1874 152 14 21 chr15 55750016 55750306 -45630215 - AluJo SINE Alu -24 288 1 2718 192 79 104 chr15 55750638 55751905 -45628616 + L1MC5 LINE L1 6622 7856 -105 2126 125 3 3 chr15 55752378 55752681 -45627840 - AluSg SINE Alu -7 303 1 28 29 0 0 chr15 55753216 55753251 -45627270 + AT_rich Low_complexity Low_complexity 1 35 0 2400 70 0 13 chr15 55753738 55754040 -45626481 - AluY SINE Alu -13 298 1 22 56 0 0 chr15 55755066 55755102 -45625419 + AT_rich Low_complexity Low_complexity 1 36 0 2124 117 10 0 chr15 55756551 55756858 -45623663 + AluSg SINE Alu 1 310 0 26 0 0 0 chr15 55757598 55757624 -45622897 + AT_rich Low_complexity Low_complexity 1 26 0 2341 95 7 0 chr15 55757816 55758111 -45622410 - AluSx SINE Alu -15 297 1 2182 107 0 38 chr15 55759373 55759692 -45620829 - AluSx SINE Alu -5 307 1 24 0 0 0 chr15 55759855 55759879 -45620642 + AT_rich Low_complexity Low_complexity 1 24 0 2014 114 14 7 chr15 55760550 55760847 -45619674 - AluSx SINE Alu -11 301 3 1327 151 18 127 chr15 55760950 55761281 -45619240 + AluJo SINE Alu 2 296 -16 304 284 116 9 chr15 55761415 55761577 -45618944 - MIR SINE MIR -50 212 39 1670 161 3 20 chr15 55761671 55761976 -45618545 + AluSx SINE Alu 1 300 -12 1978 147 3 0 chr15 55761979 55762303 -45618218 + AluSx SINE Alu 1 325 0 2195 116 3 0 chr15 55762311 55762613 -45617908 + AluSx SINE Alu 1 303 -9 253 236 193 62 chr15 55762788 55762949 -45617572 - MIR SINE MIR -33 229 48 1725 128 4 0 chr15 55763406 55763648 -45616873 - AluSg/x SINE Alu -5 307 65 2193 125 0 3 chr15 55763732 55764037 -45616484 + AluSq SINE Alu 2 305 -8 414 119 86 4 chr15 55764078 55764323 -45616198 + (TA)n Simple_repeat Simple_repeat 1 265 0 2177 121 0 13 chr15 55764347 55764654 -45615867 - AluSx SINE Alu -9 303 1 1363 225 13 7 chr15 55764713 55765015 -45615506 + AluJb SINE Alu 1 304 -8 2274 102 0 16 chr15 55765438 55765753 -45614768 - AluSq SINE Alu -3 310 1 724 212 59 9 chr15 55766030 55766305 -45614216 - MER46C DNA MER2_type -9 329 5 852 199 13 0 chr15 55766466 55766622 -45613899 - AluJb SINE Alu -18 294 137 22 35 0 0 chr15 55766702 55766731 -45613790 + AT_rich Low_complexity Low_complexity 1 29 0 2003 150 0 0 chr15 55766976 55767276 -45613245 - AluSx SINE Alu -12 300 1 480 299 35 35 chr15 55767664 55767838 -45612683 + MER5B DNA MER1_type 4 177 -1 240 233 68 0 chr15 55768178 55768251 -45612270 + HAL1b LINE L1 1232 1309 -39 2231 114 3 0 chr15 55768252 55768550 -45611971 - AluSg SINE Alu -11 299 1 1997 114 3 88 chr15 55768866 55769208 -45611313 - AluSq SINE Alu 0 313 1 434 266 37 0 chr15 55769260 55769369 -45611152 - L2 LINE L2 -4 3309 3197 246 286 45 18 chr15 55770709 55770821 -45609700 - MIR3 SINE MIR -5 203 89 1911 84 76 0 chr15 55770918 55771204 -45609317 + AluSp SINE Alu 1 306 0 803 130 65 32 chr15 55771327 55771450 -45609071 - FLAM_C SINE Alu -6 127 1 29 0 0 0 chr15 55771641 55771670 -45608851 + AT_rich Low_complexity Low_complexity 1 29 0 1792 97 39 81 chr15 55771854 55772162 -45608359 - AluSx SINE Alu -17 295 1 829 150 43 7 chr15 55772306 55772446 -45608075 + FRAM SINE Alu 8 152 -24 320 69 14 42 chr15 55772446 55772518 -45608003 + (TA)n Simple_repeat Simple_repeat 1 70 0 33 0 0 0 chr15 55774929 55774962 -45605559 + GC_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr15 55775376 55775397 -45605124 + GC_rich Low_complexity Low_complexity 1 21 0 495 204 19 19 chr15 55776516 55776624 -45603897 - MIR SINE MIR -85 123 16 1530 107 21 41 chr15 55776687 55776930 -45603591 + AluSx SINE Alu 60 297 -15 2346 102 0 3 chr15 55776932 55777236 -45603285 + AluSx SINE Alu 3 305 -7 1881 120 4 11 chr15 55777301 55777577 -45602944 - AluJb SINE Alu 0 312 39 974 143 0 0 chr15 55777624 55777757 -45602764 - FLAM_C SINE Alu 0 133 1 2405 68 0 3 chr15 55777951 55778246 -45602275 - AluY SINE Alu -17 294 1 1929 116 3 73 chr15 55778521 55778849 -45601672 - AluSx SINE Alu -7 305 1 245 273 36 0 chr15 55778993 55779048 -45601473 + L1ME3A LINE L1 666 722 -5483 2170 113 3 0 chr15 55779107 55779409 -45601112 + AluSx SINE Alu 1 303 -9 645 257 54 21 chr15 55779487 55779772 -45600749 + L1ME3A LINE L1 1182 1512 -4862 2028 99 34 27 chr15 55779779 55780073 -45600448 - AluSc SINE Alu -13 296 1 2317 91 3 0 chr15 55780083 55780380 -45600141 - AluY SINE Alu -11 300 3 2203 113 10 0 chr15 55780383 55780685 -45599836 - AluSg SINE Alu -4 306 2 279 283 169 17 chr15 55780861 55781098 -45599423 + L1ME3A LINE L1 2031 2303 -4093 2377 90 0 3 chr15 55781152 55781463 -45599058 + AluSg SINE Alu 1 310 0 1387 130 12 83 chr15 55781541 55781623 -45598898 - MER46A DNA MER2_type -2495 236 150 2418 154 58 14 chr15 55781623 55782038 -45598483 - Tigger2a DNA MER2_type -1 433 1 1387 130 12 83 chr15 55782038 55782157 -45598364 - MER46A DNA MER2_type -2581 150 54 6352 96 28 3 chr15 55782157 55783207 -45597314 + L1PB1 LINE L1 5078 6148 -3 1387 130 12 83 chr15 55783207 55783257 -45597264 - MER46A DNA MER2_type -2677 54 2 2514 264 155 88 chr15 55783281 55784212 -45596309 + L1ME3A LINE L1 2446 3313 -2902 2377 74 10 3 chr15 55784212 55784508 -45596013 + AluY SINE Alu 1 298 -13 2514 264 155 88 chr15 55784508 55784547 -45595974 + L1ME3A LINE L1 3313 3348 -2867 1532 203 0 10 chr15 55784547 55784837 -45595684 + AluSx SINE Alu 1 287 -25 2514 264 155 88 chr15 55784837 55785025 -45595496 + L1ME3A LINE L1 3348 3522 -2693 1650 183 7 14 chr15 55785025 55785320 -45595201 + AluSx SINE Alu 3 295 -17 2514 264 155 88 chr15 55785320 55785491 -45595030 + L1ME3A LINE L1 3522 3680 -2535 2319 114 0 0 chr15 55785491 55785799 -45594722 + AluSg SINE Alu 1 308 -2 2514 264 155 88 chr15 55785799 55786213 -45594308 + L1ME3A LINE L1 3680 4065 -2150 1491 170 0 102 chr15 55786213 55786537 -45593984 - AluJo SINE Alu -21 291 1 2514 264 155 88 chr15 55786537 55786611 -45593910 + L1ME3A LINE L1 4065 4133 -2082 2168 105 0 3 chr15 55786611 55786928 -45593593 - AluSx SINE Alu 0 316 1 2514 264 155 88 chr15 55786928 55787069 -45593452 + L1ME3A LINE L1 4133 4263 -1952 2354 84 0 26 chr15 55787069 55787378 -45593143 - AluY SINE Alu -10 301 1 2225 118 0 3 chr15 55787379 55787676 -45592845 - AluSx SINE Alu -14 298 3 2514 264 155 88 chr15 55787676 55788120 -45592401 + L1ME3A LINE L1 4262 5018 -1197 421 253 112 24 chr15 55788498 55788747 -45591774 + L1ME3A LINE L1 5120 5390 -825 934 268 10 34 chr15 55788755 55789050 -45591471 + AluSx SINE Alu 1 288 -14 24 0 0 0 chr15 55789050 55789074 -45591447 + AT_rich Low_complexity Low_complexity 1 24 0 1679 173 0 46 chr15 55789343 55789666 -45590855 + AluSg SINE Alu 3 310 0 255 61 0 0 chr15 55789718 55789751 -45590770 + (TG)n Simple_repeat Simple_repeat 1 33 0 533 271 52 22 chr15 55789768 55790045 -45590476 + L1ME3A LINE L1 5429 5701 -538 676 250 12 42 chr15 55790047 55790238 -45590283 - AluJb SINE Alu 0 312 137 691 222 63 6 chr15 55790240 55790415 -45590106 + L1ME3A LINE L1 5696 5900 -339 2150 117 0 0 chr15 55790688 55790998 -45589523 - AluSx SINE Alu 0 310 1 1329 266 7 3 chr15 55791281 55791570 -45588951 + MLT1F LTR MaLR 12 301 -241 1359 176 96 79 chr15 55791689 55791842 -45588679 - L1M4 LINE L1 -449 5735 5586 186 43 0 0 chr15 55791842 55791865 -45588656 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2147 117 0 0 chr15 55791867 55792150 -45588371 - AluSx SINE Alu -29 283 1 1359 176 96 79 chr15 55792150 55792431 -45588090 - L1M4 LINE L1 -598 5586 5292 246 207 0 0 chr15 55792606 55792664 -45587857 - FLAM_A SINE Alu -1 132 75 690 168 0 9 chr15 55792664 55792777 -45587744 + AluJb SINE Alu 199 310 -2 572 158 11 32 chr15 55792775 55792870 -45587651 - AluJo SINE Alu -98 214 122 * 233 271 14 29 chr15 55792870 55792940 -45587581 - L1MC5 LINE L1 -48 7913 7845 2252 119 7 3 chr15 55793305 55793608 -45586913 - AluSq SINE Alu -9 304 1 1783 154 13 13 chr15 55794170 55794482 -45586039 + AluJb SINE Alu 1 312 0 2124 101 4 0 chr15 55794573 55794873 -45585648 - AluSx SINE Alu 0 306 6 1731 131 25 62 chr15 55794893 55795213 -45585308 - AluSx SINE Alu 0 312 5 520 209 0 27 chr15 55795304 55795414 -45585107 - FLAM_C SINE Alu -7 136 30 1651 136 37 83 chr15 55795419 55795567 -45584954 + AluJo SINE Alu 1 154 -158 2105 122 0 0 chr15 55795567 55795855 -45584666 + AluSx SINE Alu 1 288 -24 201 74 0 0 chr15 55795855 55795882 -45584639 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 1651 136 37 83 chr15 55795882 55796056 -45584465 + AluJo SINE Alu 152 309 -3 507 60 0 0 chr15 55796094 55796161 -45584360 + (TG)n Simple_repeat Simple_repeat 2 68 0 1875 165 7 3 chr15 55796162 55796465 -45584056 - AluJb SINE Alu -8 304 1 240 255 149 0 chr15 55796565 55796659 -45583862 + MIR SINE MIR 60 167 -95 371 291 9 9 chr15 55796718 55796828 -45583693 + MIR3 SINE MIR 69 178 -30 1398 190 7 34 chr15 55796865 55797160 -45583361 + AluJb SINE Alu 1 287 -25 518 230 24 24 chr15 55797162 55797288 -45583233 - AluJb SINE Alu -176 136 11 445 243 11 88 chr15 55797585 55797766 -45582755 + AluY SINE Alu 119 285 -26 180 0 0 0 chr15 55797766 55797786 -45582735 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 602 227 9 0 chr15 55797786 55797896 -45582625 - AluJb SINE Alu -191 121 11 771 161 8 15 chr15 55799043 55799173 -45581348 + L1MC3 LINE L1 7425 7553 -232 4778 259 66 65 chr15 55799310 55799523 -45580998 - L1MEc LINE L1 -3007 3208 2997 1927 95 8 0 chr15 55799523 55799775 -45580746 + AluSx SINE Alu 1 254 -58 2271 93 0 17 chr15 55799782 55800082 -45580439 - AluSq SINE Alu -18 295 1 4778 259 66 65 chr15 55800082 55800096 -45580425 - L1MEc LINE L1 -3223 2992 2980 2255 92 3 3 chr15 55800096 55800391 -45580130 - AluSx SINE Alu -17 295 1 4778 259 66 65 chr15 55800391 55800671 -45579850 - L1MEc LINE L1 -3235 2980 2702 2324 103 0 0 chr15 55800671 55800973 -45579548 + AluSx SINE Alu 1 302 -10 4778 259 66 65 chr15 55800973 55801022 -45579499 - L1MEc LINE L1 -3513 2702 2655 2163 88 3 11 chr15 55801022 55801306 -45579215 + AluSx SINE Alu 1 282 -30 180 0 0 0 chr15 55801309 55801329 -45579192 + (TAA)n Simple_repeat Simple_repeat 2 21 0 4778 259 66 65 chr15 55801329 55801570 -45578951 - L1MEc LINE L1 -3561 2654 2415 2251 118 0 0 chr15 55801570 55801875 -45578646 - AluSc SINE Alu -4 305 1 4778 259 66 65 chr15 55801875 55801919 -45578602 - L1MEc LINE L1 -3800 2415 2373 1465 151 0 0 chr15 55801919 55802131 -45578390 - AluJo SINE Alu -100 212 1 4778 259 66 65 chr15 55802131 55802980 -45577541 - L1MEc LINE L1 -3842 2373 1527 1703 172 54 3 chr15 55802980 55803276 -45577245 - AluJb SINE Alu -1 311 1 4778 259 66 65 chr15 55803276 55803379 -45577142 - L1MEc LINE L1 -4688 1527 1426 2081 129 10 3 chr15 55803379 55803681 -45576840 + AluSx SINE Alu 1 304 -8 4778 259 66 65 chr15 55803681 55803920 -45576601 - L1MEc LINE L1 -4789 1426 1189 2299 104 0 3 chr15 55803920 55804218 -45576303 - AluSg SINE Alu -13 297 1 4778 259 66 65 chr15 55804218 55804399 -45576122 - L1MEc LINE L1 -5026 1189 1010 1963 162 0 3 chr15 55804399 55804701 -45575820 - AluJb SINE Alu -11 301 1 4778 259 66 65 chr15 55804701 55805598 -45574923 - L1MEc LINE L1 -5205 1010 75 25 0 0 0 chr15 55805598 55805623 -45574898 + AT_rich Low_complexity Low_complexity 1 25 0 2317 104 0 7 chr15 55805695 55806003 -45574518 - AluSx SINE Alu -6 306 1 229 204 19 0 chr15 55806087 55806141 -45574380 + L1P5 LINE L1 5378 5432 -719 540 258 8 0 chr15 55806218 55806338 -45574183 - L2 LINE L2 -955 2359 2239 2024 134 3 10 chr15 55806715 55807014 -45573507 + AluSx SINE Alu 3 299 -13 328 316 71 49 chr15 55807088 55807677 -45572844 + L1MEd LINE L1 587 1188 -4931 268 263 166 60 chr15 55807687 55807994 -45572527 + L1MEd LINE L1 1265 1538 -4772 2408 81 3 0 chr15 55807994 55808289 -45572232 + AluSp SINE Alu 1 296 -17 348 83 0 0 chr15 55808289 55808337 -45572184 + (TA)n Simple_repeat Simple_repeat 2 49 0 268 263 166 60 chr15 55808337 55808464 -45572057 + L1MEd LINE L1 1538 1650 -4660 2113 105 0 26 chr15 55808464 55808768 -45571753 + AluSg SINE Alu 1 296 -14 268 263 166 60 chr15 55808768 55808867 -45571654 + L1MEd LINE L1 1650 1857 -4453 1825 154 41 3 chr15 55808904 55809197 -45571324 - AluJb SINE Alu -8 304 1 1935 178 16 22 chr15 55809300 55809666 -45570855 + L1M4 LINE L1 5406 5769 -405 331 259 35 0 chr15 55809693 55809708 -45570813 - HAL1 LINE L1 -1190 1317 1304 220 224 0 0 chr15 55809708 55809757 -45570764 + T-rich Low_complexity Low_complexity 1 49 0 331 259 35 0 chr15 55809757 55809778 -45570743 - HAL1 LINE L1 -1203 1304 1230 492 110 0 49 chr15 55809781 55809863 -45570658 - FLAM SINE Alu -11 132 55 527 259 124 24 chr15 55809893 55810183 -45570338 - HAL1 LINE L1 -1269 1238 920 1980 122 6 80 chr15 55810213 55810550 -45569971 + AluSx SINE Alu 1 312 0 2116 144 0 3 chr15 55810569 55810882 -45569639 + AluSx SINE Alu 1 312 0 2210 99 3 0 chr15 55811295 55811589 -45568932 - AluSp SINE Alu -18 295 1 836 171 14 0 chr15 55812369 55812515 -45568006 - FAM SINE Alu -1 48 1 221 269 19 0 chr15 55812801 55812853 -45567668 - MIR3 SINE MIR -7 201 149 1766 189 3 7 chr15 55812871 55813167 -45567354 - AluJb SINE Alu -17 295 1 771 69 0 0 chr15 55813658 55813760 -45566761 + (TTC)n Simple_repeat Simple_repeat 3 104 0 1707 106 34 8 chr15 55813780 55814016 -45566505 - AluSx SINE Alu -70 242 1 1980 133 7 0 chr15 55814341 55814627 -45565894 - AluSx SINE Alu -24 288 1 341 371 14 9 chr15 55815714 55815927 -45564594 - L2 LINE L2 -1639 1675 1462 400 141 41 0 chr15 55815968 55816089 -45564432 + (TA)n Simple_repeat Simple_repeat 2 127 0 297 349 71 18 chr15 55816602 55816883 -45563638 + L2 LINE L2 1380 1675 -1639 559 153 172 61 chr15 55816915 55817078 -45563443 - MER20 DNA MER1_type -2 217 37 558 135 60 0 chr15 55817094 55817227 -45563294 - Charlie5 DNA MER1_type -103 2509 2369 22 0 0 0 chr15 55817227 55817249 -45563272 + AT_rich Low_complexity Low_complexity 1 22 0 191 184 0 20 chr15 55817249 55817298 -45563223 + GA-rich Low_complexity Low_complexity 6 53 0 357 188 0 0 chr15 55817299 55817363 -45563158 - Charlie5 DNA MER1_type -2548 64 1 2172 85 0 3 chr15 55817581 55817916 -45562605 - AluY SINE Alu 0 334 1 2168 101 7 0 chr15 55817916 55818214 -45562307 - AluSx SINE Alu -12 300 1 515 288 117 6 chr15 55818299 55818523 -45561998 - MIR SINE MIR -6 256 19 259 138 15 31 chr15 55819099 55819164 -45561357 + (CGG)n Simple_repeat Simple_repeat 2 65 0 22 35 0 0 chr15 55821199 55821228 -45559293 + AT_rich Low_complexity Low_complexity 1 29 0 197 303 111 62 chr15 55821484 55821646 -45558875 + MIR3 SINE MIR 30 199 -9 1963 112 37 17 chr15 55821777 55822073 -45558448 + AluSx SINE Alu 1 302 -10 1837 123 40 27 chr15 55822413 55822713 -45557808 + AluSg SINE Alu 1 304 -6 654 267 175 35 chr15 55822773 55823088 -45557433 - L2 LINE L2 -17 3296 2938 369 262 39 80 chr15 55823208 55823437 -45557084 + L1MC5 LINE L1 7530 7737 -224 2022 111 7 4 chr15 55823437 55823743 -45556778 - AluSx SINE Alu 0 308 2 369 262 39 80 chr15 55823743 55823924 -45556597 + L1MC5 LINE L1 7737 7924 -37 1802 185 0 6 chr15 55823935 55824249 -45556272 + AluJb SINE Alu 1 312 0 2106 124 0 13 chr15 55824283 55824582 -45555939 + AluSx SINE Alu 1 295 -17 2031 105 0 92 chr15 55824626 55824941 -45555580 + AluSx SINE Alu 1 286 -26 181 298 158 35 chr15 55825038 55825152 -45555369 - L2 LINE L2 -4 3268 3141 2099 125 7 3 chr15 55825433 55825738 -45554783 - AluSx SINE Alu -6 306 1 909 228 76 55 chr15 55825745 55825873 -45554648 - L1MC4 LINE L1 0 8042 7918 2001 139 30 0 chr15 55825873 55826168 -45554353 - AluSx SINE Alu -8 304 1 909 228 76 55 chr15 55826168 55826473 -45554048 - L1MC4 LINE L1 -124 7918 7600 1048 208 88 87 chr15 55826478 55826865 -45553656 - L1MC4 LINE L1 -585 7226 6850 2183 74 7 33 chr15 55826865 55827164 -45553357 - AluSg1 SINE Alu -18 291 1 1048 208 88 87 chr15 55827164 55827299 -45553222 - L1MC4 LINE L1 -961 6850 6717 1944 145 0 32 chr15 55827690 55828001 -45552520 + AluSx SINE Alu 1 301 -11 267 31 0 0 chr15 55828045 55828077 -45552444 + (T)n Simple_repeat Simple_repeat 1 32 0 254 298 53 53 chr15 55828210 55828398 -45552123 - HAL1 LINE L1 -4 2503 2316 4322 186 78 57 chr15 55828658 55828935 -45551586 + Charlie1a DNA MER1_type 2 272 -2489 2208 98 3 13 chr15 55828935 55829240 -45551281 + AluSc SINE Alu 1 302 -7 4322 186 78 57 chr15 55829240 55829287 -45551234 + Charlie1a DNA MER1_type 272 317 -2444 2191 108 0 16 chr15 55829287 55829602 -45550919 - AluSg SINE Alu 0 310 1 4322 186 78 57 chr15 55829602 55829645 -45550876 + Charlie1a DNA MER1_type 317 358 -2403 1358 116 19 0 chr15 55829645 55829861 -45550660 - L1PA13 LINE L1 0 6163 5944 4322 186 78 57 chr15 55829861 55830742 -45549779 + Charlie1a DNA MER1_type 358 1219 -1542 2203 106 7 0 chr15 55830742 55831035 -45549486 - AluSx SINE Alu -17 295 1 4322 186 78 57 chr15 55831035 55831102 -45549419 + Charlie1a DNA MER1_type 1219 1283 -1478 2043 163 89 0 chr15 55831102 55831494 -45549027 - MSTA LTR MaLR -1 427 1 4322 186 78 57 chr15 55831494 55831544 -45548977 + Charlie1a DNA MER1_type 1283 1400 -55 1491 171 4 0 chr15 55831550 55831790 -45548731 - AluJb SINE Alu -3 309 69 2019 129 10 0 chr15 55831825 55832120 -45548401 + AluSx SINE Alu 1 298 -14 243 261 182 11 chr15 55832231 55832319 -45548202 - L2 LINE L2 -8 3305 3203 637 300 91 0 chr15 55832446 55832666 -45547855 - L2 LINE L2 -254 3059 2820 258 240 50 10 chr15 55832667 55832767 -45547754 - HAL1 LINE L1 -1182 1325 1222 981 136 298 15 chr15 55833190 55833455 -45547066 - Tigger7 DNA MER2_type 0 2487 2148 590 209 9 0 chr15 55833472 55833587 -45546934 - Tigger7 DNA MER2_type -589 116 1 21 0 0 0 chr15 55833943 55833964 -45546557 + AT_rich Low_complexity Low_complexity 1 21 0 310 282 153 59 chr15 55834103 55834341 -45546180 + L2 LINE L2 2787 3044 -269 571 194 23 16 chr15 55834376 55834505 -45546016 - FAM SINE Alu -7 42 1 1648 172 38 0 chr15 55834511 55834801 -45545720 - AluJb SINE Alu -11 301 1 1941 152 0 10 chr15 55834801 55835097 -45545424 - AluJb SINE Alu -18 294 2 548 231 130 6 chr15 55835100 55835269 -45545252 + L2 LINE L2 3118 3307 -6 604 141 99 16 chr15 55836593 55836714 -45543807 - FLAM_C SINE Alu -12 131 1 441 276 92 7 chr15 55837217 55837369 -45543152 - MIR SINE MIR -58 204 40 926 233 49 28 chr15 55837603 55837891 -45542630 - L1ME2 LINE L1 -10 6154 5861 265 204 88 26 chr15 55837901 55838014 -45542507 - L1MC4 LINE L1 -1 8041 7922 2079 101 0 7 chr15 55838184 55838461 -45542060 - AluSg1 SINE Alu -14 295 21 1613 238 142 47 chr15 55838473 55839610 -45540911 - L1ME1 LINE L1 -9 6226 4971 1843 151 3 10 chr15 55839610 55839914 -45540607 - AluJo SINE Alu -10 302 1 1613 238 142 47 chr15 55839914 55840022 -45540499 - L1ME1 LINE L1 -1264 4971 4875 793 201 98 49 chr15 55840042 55840344 -45540177 - L1ME1 LINE L1 -4150 2246 1924 2149 102 11 7 chr15 55840344 55840654 -45539867 - AluSx SINE Alu 0 311 1 793 201 98 49 chr15 55840654 55840678 -45539843 - L1ME1 LINE L1 -4472 1924 1903 1904 170 7 3 chr15 55841068 55841368 -45539153 + AluJb SINE Alu 1 301 -11 243 313 35 26 chr15 55841397 55841512 -45539009 - L3 LINE CR1 -816 761 646 458 159 192 0 chr15 55841632 55841783 -45538738 - Charlie1 DNA MER1_type -149 2612 2433 2202 147 0 0 chr15 55841785 55842097 -45538424 - AluSx SINE Alu 0 312 1 2273 116 0 0 chr15 55842990 55843293 -45537228 + AluSx SINE Alu 1 303 -9 2184 130 0 13 chr15 55843710 55844025 -45536496 + AluSx SINE Alu 1 311 -1 608 140 9 18 chr15 55844175 55844289 -45536232 + MLT1B LTR MaLR 1 113 -277 629 150 23 2 chr15 55844394 55844517 -45536004 - L1MB2 LINE L1 -209 5961 5830 216 0 0 0 chr15 55844534 55844558 -45535963 + (T)n Simple_repeat Simple_repeat 1 24 0 2348 93 20 0 chr15 55844909 55845211 -45535310 - AluSg SINE Alu -2 308 1 1322 128 0 0 chr15 55845224 55845412 -45535109 - AluSg/x SINE Alu 0 310 123 225 140 53 0 chr15 55845603 55845660 -45534861 + L1MB7 LINE L1 6125 6184 0 989 235 6 35 chr15 55845760 55846071 -45534450 - L1MA10 LINE L1 -4 6330 6029 2333 87 0 16 chr15 55846344 55846655 -45533866 + AluY SINE Alu 2 307 -4 1900 139 24 10 chr15 55846665 55846953 -45533568 + AluSx SINE Alu 1 292 -20 590 165 0 0 chr15 55847457 55847548 -45532973 - AluJ/FLAM SINE Alu -221 91 1 1414 179 155 18 chr15 55847613 55847722 -45532799 - L1MC3 LINE L1 -646 7139 7046 1946 148 0 10 chr15 55847722 55848026 -45532495 - AluSx SINE Alu -11 301 1 1414 179 155 18 chr15 55848026 55848296 -45532225 - L1MC3 LINE L1 -739 7046 6708 1588 159 27 17 chr15 55848694 55848989 -45531532 - AluJb SINE Alu -14 298 1 1459 185 76 0 chr15 55849796 55850072 -45530449 - AluSx SINE Alu -15 297 1 186 43 0 0 chr15 55850087 55850110 -45530411 + (TA)n Simple_repeat Simple_repeat 1 23 0 1964 104 0 0 chr15 55850111 55850360 -45530161 - AluSc SINE Alu -17 292 44 2711 136 44 0 chr15 55850643 55851071 -45529450 + MER1A DNA MER1_type 1 447 -82 206 278 37 0 chr15 55851348 55851402 -45529119 + MIR3 SINE MIR 147 202 -6 190 247 68 41 chr15 55851975 55852048 -45528473 + L2 LINE L2 3224 3298 -15 785 179 42 47 chr15 55852235 55852425 -45528096 + MER20 DNA MER1_type 31 219 0 435 259 282 6 chr15 55852453 55852627 -45527894 + MIR SINE MIR 38 259 -3 540 211 114 0 chr15 55852631 55852745 -45527776 + L2 LINE L2 3187 3313 0 277 346 19 31 chr15 55852796 55852892 -45527629 - L2 LINE L2 -947 2367 2272 1845 163 48 0 chr15 55852892 55853186 -45527335 + AluJb SINE Alu 1 308 -4 277 346 19 31 chr15 55853186 55853248 -45527273 - L2 LINE L2 -1042 2272 2211 1426 160 56 35 chr15 55854138 55854449 -45526072 + AluJb SINE Alu 1 317 0 192 281 177 0 chr15 55854490 55854586 -45525935 + MIR SINE MIR 54 166 -96 775 250 6 0 chr15 55854590 55854754 -45525767 - AluJb SINE Alu -20 292 128 664 167 8 45 chr15 55854777 55854909 -45525612 - AluSq/x SINE Alu -181 132 6 24 32 0 0 chr15 55854913 55854944 -45525577 + AT_rich Low_complexity Low_complexity 1 31 0 514 247 0 0 chr15 55855064 55855157 -45525364 + FLAM_A SINE Alu 2 94 -48 364 254 84 14 chr15 55855554 55855696 -45524825 + L1M4 LINE L1 5015 5166 -980 1815 156 35 11 chr15 55855698 55856069 -45524452 - L1M3 LINE L1 -509 5671 5292 868 136 0 57 chr15 55856099 55856239 -45524282 - AluJb SINE Alu -180 132 1 733 180 16 36 chr15 55856247 55856441 -45524080 - L1M3 LINE L1 -858 5288 5099 27 29 0 0 chr15 55856956 55856990 -45523531 + AT_rich Low_complexity Low_complexity 1 34 0 490 336 106 0 chr15 55857272 55857489 -45523032 + MIR SINE MIR 23 262 0 1164 175 14 31 chr15 55857748 55857971 -45522550 - MER20 DNA MER1_type 0 219 1 2149 106 0 10 chr15 55860794 55861087 -45519434 + AluSg SINE Alu 1 290 -20 287 262 148 54 chr15 55862159 55862308 -45518213 - MER5B DNA MER1_type -9 169 7 599 237 0 30 chr15 55862321 55862456 -45518065 + FLAM_A SINE Alu 3 133 0 23 0 0 0 chr15 55862546 55862569 -45517952 + AT_rich Low_complexity Low_complexity 1 23 0 789 129 27 142 chr15 55863120 55863287 -45517234 + L1MB2 LINE L1 5934 6070 -101 1433 162 65 47 chr15 55863287 55863565 -45516956 - AluJb SINE Alu -29 283 1 789 129 27 142 chr15 55863565 55863622 -45516899 + L1MB2 LINE L1 6070 6132 -39 2750 208 38 45 chr15 55863778 55864496 -45516025 - L1ME1 LINE L1 -32 6134 5412 1790 176 3 6 chr15 55864496 55864809 -45515712 + AluJb SINE Alu 1 312 0 2750 208 38 45 chr15 55864809 55864857 -45515664 - L1ME1 LINE L1 -754 5412 5365 1735 200 3 0 chr15 55864857 55865157 -45515364 - AluJb SINE Alu -11 301 1 2750 208 38 45 chr15 55865157 55865248 -45515273 - L1ME1 LINE L1 -801 5365 5275 1229 194 171 8 chr15 55865248 55865511 -45515010 + AluSx SINE Alu 1 306 -6 2750 208 38 45 chr15 55865511 55865860 -45514661 - L1ME1 LINE L1 -891 5275 4925 1829 165 3 7 chr15 55865878 55866187 -45514334 + AluJb SINE Alu 1 308 -4 21 57 0 0 chr15 55866254 55866289 -45514232 + AT_rich Low_complexity Low_complexity 1 35 0 2277 91 6 22 chr15 55866882 55867200 -45513321 + AluSq SINE Alu 1 313 0 2152 109 0 26 chr15 55868040 55868342 -45512179 + AluSq SINE Alu 1 294 -19 210 211 0 0 chr15 55868405 55868443 -45512078 - MIR SINE MIR -75 133 96 430 204 19 0 chr15 55868671 55868774 -45511747 + L1ME LINE L1 5638 5742 -424 1981 134 3 7 chr15 55868914 55869213 -45511308 + AluSq SINE Alu 1 298 -15 302 254 82 9 chr15 55869335 55869445 -45511076 + L1MC/D LINE L1 4491 4608 -1538 302 325 63 29 chr15 55869552 55869930 -45510591 + L1MC/D LINE L1 4757 5147 -999 1793 158 3 7 chr15 55869960 55870244 -45510277 + AluJb SINE Alu 17 299 -13 628 203 33 118 chr15 55870322 55870628 -45509893 + L1MC/D LINE L1 5263 5542 -2266 2418 92 0 3 chr15 55871146 55871451 -45509070 - AluSq SINE Alu -9 304 1 1680 141 13 61 chr15 55872306 55872619 -45507902 - AluJb SINE Alu -2 310 13 32 26 0 0 chr15 55872619 55872658 -45507863 + AT_rich Low_complexity Low_complexity 1 39 0 2236 132 0 0 chr15 55873069 55873372 -45507149 + AluSx SINE Alu 1 303 -9 203 211 56 28 chr15 55873441 55873583 -45506938 + (TTATA)n Simple_repeat Simple_repeat 5 150 0 * 312 192 51 40 chr15 55873491 55873668 -45506853 + (TA)n Simple_repeat Simple_repeat 2 180 0 1484 78 37 14 chr15 55874312 55874530 -45505991 - L1PB1 LINE L1 -1 6150 5928 2115 135 0 0 chr15 55874546 55874843 -45505678 - AluSx SINE Alu -15 297 1 455 285 112 11 chr15 55874953 55875132 -45505389 - MIR SINE MIR -37 225 29 2077 114 7 0 chr15 55875263 55875552 -45504969 - AluSx SINE Alu -21 291 1 2372 81 0 3 chr15 55876357 55876655 -45503866 + AluSx SINE Alu 1 297 -15 512 316 84 48 chr15 55876756 55877171 -45503350 - L1 LINE L1 -1680 4466 4037 227 363 0 11 chr15 55877597 55877688 -45502833 + L2 LINE L2 2395 2484 -830 310 282 107 10 chr15 55877713 55877816 -45502705 - L2 LINE L2 -12 3301 3189 299 176 0 0 chr15 55877924 55877975 -45502546 - LTR16B LTR ERVL 0 464 414 2392 132 66 2 chr15 55878077 55878517 -45502004 - L1MB3 LINE L1 -17 6166 5699 310 105 18 0 chr15 55878517 55878574 -45501947 - Alu SINE Alu -239 60 3 2249 102 3 0 chr15 55879227 55879532 -45500989 - AluSp SINE Alu -7 306 1 855 155 72 107 chr15 55880936 55881028 -45499493 - L1MB8 LINE L1 -71 6107 6013 2253 101 3 16 chr15 55881028 55881335 -45499186 - AluSx SINE Alu -9 303 1 1996 85 64 4 chr15 55881339 55881620 -45498901 - AluSq SINE Alu -15 298 1 855 155 72 107 chr15 55881620 55881812 -45498709 - L1MB8 LINE L1 -168 6010 5828 978 152 123 9 chr15 55881814 55882025 -45498496 - Tigger7 DNA MER2_type -2 2585 2351 1549 152 75 50 chr15 55882078 55882284 -45498237 - L1MB8 LINE L1 -348 5830 5610 2149 121 3 3 chr15 55882284 55882582 -45497939 - AluSx SINE Alu -14 298 1 1549 152 75 50 chr15 55882582 55882736 -45497785 - L1MB8 LINE L1 -568 5610 5461 527 211 152 25 chr15 55883194 55883398 -45497123 + L1ME3A LINE L1 5941 6170 0 2201 129 0 0 chr15 55885447 55885741 -45494780 - AluSx SINE Alu -18 294 1 1418 204 4 0 chr15 55885921 55886185 -45494336 - AluJb SINE Alu -9 303 39 348 251 61 20 chr15 55887643 55887889 -45492632 - L1MC4a LINE L1 -1962 5846 5557 469 242 53 23 chr15 55887925 55888057 -45492464 - MIR SINE MIR 0 262 127 203 301 27 55 chr15 55888219 55888292 -45492229 - MIR SINE MIR -97 111 41 2271 112 39 17 chr15 55888415 55888771 -45491750 - THE1B LTR MaLR 0 364 1 1583 88 22 0 chr15 55888771 55888999 -45491522 - THE1B-int LTR MaLR 0 1580 1348 * 2351 122 25 5 chr15 55888997 55889510 -45491011 - THE1B-int LTR MaLR -1017 563 1 1927 140 26 69 chr15 55889510 55889571 -45490950 - THE1B LTR MaLR 0 364 302 1798 120 68 20 chr15 55889571 55889863 -45490658 - AluSx SINE Alu -6 306 1 1927 140 26 69 chr15 55889863 55890180 -45490341 - THE1B LTR MaLR -62 302 2 1600 171 13 23 chr15 55890324 55890633 -45489888 - AluJb SINE Alu 0 312 7 2430 65 3 0 chr15 55891059 55891350 -45489171 + AluSp SINE Alu 2 293 -20 231 275 131 0 chr15 55892013 55892173 -45488348 - L1MC4 LINE L1 -1 8041 7861 226 193 0 70 chr15 55892229 55892286 -45488235 - L1MC5 LINE L1 -603 7358 7306 1382 220 35 77 chr15 55892403 55892475 -45488046 - L1MC5 LINE L1 -722 7239 7166 2279 96 3 0 chr15 55892475 55892767 -45487754 - AluSp SINE Alu -20 293 1 1382 220 35 77 chr15 55892767 55893225 -45487296 - L1MC5 LINE L1 -795 7166 6736 2161 106 3 3 chr15 55893225 55893518 -45487003 - AluSc SINE Alu -16 293 1 1382 220 35 77 chr15 55893518 55893609 -45486912 - L1MC5 LINE L1 -1225 6736 6643 1208 214 3 64 chr15 55893623 55893936 -45486585 - AluJo SINE Alu -17 295 2 272 89 22 0 chr15 55894184 55894229 -45486292 + MADE1 DNA Mariner 35 80 0 380 301 48 38 chr15 55894272 55894458 -45486063 - L1MC4a LINE L1 -1520 6288 6101 549 240 25 99 chr15 55894643 55894783 -45485738 - L1MC4a LINE L1 -1981 5827 5717 2219 88 3 27 chr15 55894783 55895079 -45485442 + AluSg SINE Alu 7 295 -15 549 240 25 99 chr15 55895079 55895221 -45485300 - L1MC4a LINE L1 -2091 5717 5566 2495 63 0 3 chr15 55895428 55895731 -45484790 + AluY SINE Alu 3 304 -7 288 171 158 0 chr15 55895789 55895871 -45484650 - Charlie4 DNA MER1_type -1862 99 5 313 197 57 74 chr15 55896083 55896205 -45484316 + MLT1K LTR MaLR 469 588 0 366 284 167 12 chr15 55896622 55896784 -45483737 - MIR SINE MIR -73 189 3 1332 159 0 19 chr15 55896899 55897106 -45483415 + AluJb SINE Alu 3 205 -107 2205 92 7 3 chr15 55897500 55897795 -45482726 + AluSp SINE Alu 1 296 -17 274 231 17 29 chr15 55898276 55898514 -45482007 + CT-rich Low_complexity Low_complexity 1 235 0 200 206 0 0 chr15 55898516 55898550 -45481971 + polypyrimidine Low_complexity Low_complexity 5 38 0 959 125 0 0 chr15 55899278 55899422 -45481099 + AluSg/x SINE Alu 169 312 0 2092 118 4 0 chr15 55899502 55899774 -45480747 + AluSx SINE Alu 6 278 -34 265 106 0 0 chr15 55899781 55899828 -45480693 - AluSp/q SINE Alu -2 301 255 2287 107 3 0 chr15 55899967 55900266 -45480255 + AluSg SINE Alu 1 300 -10 670 214 15 8 chr15 55901215 55901346 -45479175 - FLAM_A SINE Alu 0 133 2 2455 62 0 7 chr15 55902189 55902494 -45478027 + AluY SINE Alu 1 303 -8 1719 146 16 42 chr15 55902574 55902883 -45477638 + AluJb SINE Alu 1 301 -11 11274 121 33 108 chr15 55902985 55903624 -45476897 - Tigger1 DNA MER2_type 0 2418 1733 2352 63 17 7 chr15 55903624 55903925 -45476596 - AluY SINE Alu -7 304 1 11274 121 33 108 chr15 55903925 55904079 -45476442 - Tigger1 DNA MER2_type -685 1733 1569 1421 210 57 4 chr15 55904079 55904360 -45476161 + AluJb SINE Alu 1 296 -16 1829 149 7 39 chr15 55904364 55904673 -45475848 + AluSx SINE Alu 3 301 -11 11274 121 33 108 chr15 55904673 55906427 -45474094 - Tigger1 DNA MER2_type -852 1566 55 919 124 0 0 chr15 55907751 55907880 -45472641 + FLAM_C SINE Alu 1 129 -4 323 229 131 46 chr15 55908703 55908856 -45471665 - L1MC4a LINE L1 -1911 5897 5732 286 232 99 63 chr15 55908859 55909001 -45471520 - L1MC4a LINE L1 -2142 5666 5520 540 255 55 21 chr15 55909199 55909344 -45471177 + MIR SINE MIR 1 150 -112 926 229 0 0 chr15 55909568 55909743 -45470778 + FAM SINE Alu 1 175 0 2384 91 0 3 chr15 55909749 55910056 -45470465 + AluSx SINE Alu 1 306 -6 356 273 153 0 chr15 55911060 55911210 -45469311 + L1M4 LINE L1 5209 5381 -765 2316 101 0 3 chr15 55911288 55911595 -45468926 - AluSx SINE Alu -6 306 1 680 219 9 0 chr15 55912538 55912652 -45467869 + FLAM_A SINE Alu 2 116 -17 780 199 47 47 chr15 55912720 55912891 -45467630 + AluJo SINE Alu 112 282 -30 1266 175 14 5 chr15 55912926 55913143 -45467378 + AluJo SINE Alu 9 227 -85 297 211 18 0 chr15 55913143 55913200 -45467321 - AluJo/FRAM SINE Alu -56 246 189 * 350 132 0 0 chr15 55913198 55913251 -45467270 + AluJo SINE Alu 230 282 -20 271 248 75 143 chr15 55913705 55913838 -45466683 + MER58A DNA MER1_type 5 128 0 37 39 0 0 chr15 55914007 55914058 -45466463 + AT_rich Low_complexity Low_complexity 1 51 0 1831 194 31 18 chr15 55914528 55914909 -45465612 - L1MA6 LINE L1 0 6300 5915 2287 110 3 0 chr15 55916167 55916468 -45464053 - AluSx SINE Alu -10 302 1 213 337 117 10 chr15 55917085 55917290 -45463231 - L2 LINE L2 -934 2380 2154 1357 134 49 49 chr15 55917520 55917766 -45462755 - Tigger2a DNA MER2_type -188 246 1 2732 181 133 9 chr15 55918587 55919160 -45461361 + MER82 DNA MER2_type 10 653 0 282 29 0 0 chr15 55920149 55920184 -45460337 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 2129 115 3 0 chr15 55920191 55920478 -45460043 - AluSx SINE Alu -24 288 1 776 110 0 0 chr15 55920724 55920824 -45459697 + AluJ/FLAM SINE Alu 1 100 -212 275 278 17 35 chr15 55921443 55921558 -45458963 - L1MC/D LINE L1 -1955 5853 5741 2046 144 72 22 chr15 55921660 55921980 -45458541 - MER1B DNA MER1_type 0 337 2 180 0 0 0 chr15 55922386 55922406 -45458115 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1631 184 3 26 chr15 55922662 55922967 -45457554 + AluJo SINE Alu 3 300 -12 847 180 41 6 chr15 55923287 55923459 -45457062 - AluJb SINE Alu 0 312 135 2215 83 0 4 chr15 55927559 55927836 -45452685 + AluY SINE Alu 15 290 -21 890 167 0 0 chr15 55928043 55928205 -45452316 - AluSg/x SINE Alu 0 303 142 1893 112 45 25 chr15 55928323 55928609 -45451912 + AluSx SINE Alu 5 296 -16 588 193 67 67 chr15 55928664 55928814 -45451707 - MLT1F1 LTR MaLR -32 535 386 2188 121 16 0 chr15 55928816 55929123 -45451398 - AluSx SINE Alu 0 312 1 189 0 0 0 chr15 55929127 55929148 -45451373 + (T)n Simple_repeat Simple_repeat 1 21 0 1617 244 21 10 chr15 55929190 55929575 -45450946 - MLT1F1 LTR MaLR -174 393 5 1486 88 0 10 chr15 55929649 55929843 -45450678 - AluSq SINE Alu -62 251 60 824 277 80 54 chr15 55930176 55930641 -45449880 - MLT1H LTR MaLR 0 549 73 180 0 0 0 chr15 55930641 55930661 -45449860 + (A)n Simple_repeat Simple_repeat 1 20 0 1802 87 87 47 chr15 55930876 55931153 -45449368 - AluY SINE Alu -23 288 1 1640 141 85 4 chr15 55931191 55931461 -45449060 + AluJb SINE Alu 1 292 -20 1646 173 14 0 chr15 55931530 55931813 -45448708 + AluJo SINE Alu 19 305 -7 1252 171 9 5 chr15 55931878 55932095 -45448426 + AluJo SINE Alu 85 302 -10 2255 116 0 0 chr15 55932487 55932788 -45447733 - AluSx SINE Alu -11 301 1 216 267 0 35 chr15 55932835 55932921 -45447600 + CT-rich Low_complexity Low_complexity 2 84 0 5347 129 46 17 chr15 55933074 55933725 -45446796 - L1PB3 LINE L1 -3 6151 5456 1719 119 6 104 chr15 55933725 55934060 -45446461 - AluJo SINE Alu -10 302 1 5347 129 46 17 chr15 55934060 55934448 -45446073 - L1PB3 LINE L1 -698 5456 5081 332 273 0 26 chr15 55934457 55934534 -45445987 - L2 LINE L2 -6 3266 3192 909 207 0 0 chr15 55937798 55937962 -45442559 + FRAM SINE Alu 1 163 -13 267 217 17 0 chr15 55938333 55938393 -45442128 - L2 LINE L2 -670 2644 2584 1694 104 100 0 chr15 55939017 55939266 -45441255 - AluSx SINE Alu -32 280 7 502 223 51 13 chr15 55939408 55939565 -45440956 + L1ME4a LINE L1 5782 5944 -177 2327 68 10 10 chr15 55939650 55939961 -45440560 + AluY SINE Alu 1 311 0 224 255 106 11 chr15 55940835 55940929 -45439592 - L2 LINE L2 -32 3240 3138 699 176 0 0 chr15 55941171 55941279 -45439242 - FLAM_C SINE Alu -34 109 2 1890 173 13 0 chr15 55941791 55942098 -45438423 - AluJo SINE Alu -1 311 1 2310 96 0 7 chr15 55942298 55942591 -45437930 - AluSg SINE Alu -19 291 1 22 56 0 0 chr15 55942599 55942635 -45437886 + AT_rich Low_complexity Low_complexity 1 36 0 2449 65 0 0 chr15 55942699 55942991 -45437530 + AluY SINE Alu 1 292 -19 26 50 0 0 chr15 55943048 55943088 -45437433 + AT_rich Low_complexity Low_complexity 1 40 0 429 288 27 38 chr15 55943320 55943504 -45437017 - L2 LINE L2 -19 3294 3113 1670 138 90 14 chr15 55943659 55943948 -45436573 - AluSx SINE Alu -1 311 1 542 223 95 20 chr15 55944069 55944217 -45436304 - L2 LINE L2 -433 2881 2723 258 291 13 0 chr15 55945188 55945267 -45435254 + MIR3 SINE MIR 112 191 -17 1893 164 0 13 chr15 55945670 55945974 -45434547 - AluJb SINE Alu -8 304 5 273 309 90 27 chr15 55946283 55946471 -45434050 + MIR SINE MIR 46 245 -17 1818 167 10 10 chr15 55947416 55947715 -45432806 - AluJb SINE Alu -13 299 1 596 183 0 58 chr15 55947765 55947885 -45432636 + FLAM_A SINE Alu 4 116 -17 1067 269 103 47 chr15 55947966 55948050 -45432471 + L1MC4 LINE L1 5801 5879 -2014 2449 206 105 18 chr15 55948050 55948354 -45432167 - REP3 LTR ERV 0 562 286 1894 147 23 3 chr15 55948354 55948654 -45431867 + AluSx SINE Alu 1 306 -6 2449 206 105 18 chr15 55948654 55948864 -45431657 - REP3 LTR ERV -276 286 3 1067 269 103 47 chr15 55948864 55949201 -45431320 + L1MC4 LINE L1 5879 6196 -1697 1508 137 4 4 chr15 55949201 55949427 -45431094 + AluJo SINE Alu 79 304 -8 1067 269 103 47 chr15 55949427 55949663 -45430858 + L1MC4 LINE L1 6196 6417 -1476 1754 159 7 7 chr15 55949663 55949953 -45430568 - AluJo SINE Alu -22 290 1 1067 269 103 47 chr15 55949953 55950291 -45430230 + L1MC4 LINE L1 6417 6949 -944 704 151 28 0 chr15 55950291 55950397 -45430124 + FRAM SINE Alu 1 108 -68 1234 269 118 12 chr15 55950421 55950989 -45429532 + L1MC4 LINE L1 6937 7564 -478 488 327 57 8 chr15 55951019 55951267 -45429254 + L1MC4 LINE L1 7781 8040 -2 1612 164 7 46 chr15 55951460 55951595 -45428926 + AluJo SINE Alu 1 140 -172 2345 122 0 0 chr15 55951595 55951907 -45428614 + AluSx SINE Alu 1 312 0 1612 164 7 46 chr15 55951907 55952076 -45428445 + AluJo SINE Alu 140 293 -19 2093 78 92 0 chr15 55952187 55952468 -45428053 - AluSx SINE Alu -5 307 1 1862 179 13 0 chr15 55952471 55952779 -45427742 - AluJo SINE Alu 0 312 1 32357 97 12 30 chr15 55955495 55961337 -45419184 - L1PA7 LINE L1 -1 6153 430 1657 153 7 27 chr15 55961337 55961738 -45418783 + L1P3 LINE L1 67 631 -5830 338 312 109 22 chr15 55962650 55962788 -45417733 + MIR SINE MIR 110 259 -3 1524 183 32 0 chr15 55963046 55963325 -45417196 + AluJo SINE Alu 5 292 -20 207 306 120 0 chr15 55963326 55963434 -45417087 + MIR SINE MIR 24 144 -118 299 244 109 25 chr15 55964023 55964142 -45416379 + MLT1J LTR MaLR 114 242 -269 593 167 0 0 chr15 55964352 55964442 -45416079 + AluJ/FLAM SINE Alu 2 91 -221 1965 140 17 90 chr15 55965866 55966287 -45414234 - MLT1B LTR MaLR 0 390 1 332 344 65 45 chr15 55967663 55967971 -45412550 + MLT1K LTR MaLR 103 416 -172 190 396 28 0 chr15 55968358 55968464 -45412057 + MIR SINE MIR 2 110 -152 389 277 26 45 chr15 55968883 55969038 -45411483 - L1ME3A LINE L1 -320 5850 5699 626 180 81 75 chr15 55969961 55970009 -45410512 - MER20 DNA MER1_type -4 215 169 195 42 0 0 chr15 55970009 55970033 -45410488 + (TG)n Simple_repeat Simple_repeat 1 24 0 626 180 81 75 chr15 55970033 55970145 -45410376 - MER20 DNA MER1_type -50 169 54 1876 128 22 95 chr15 55971214 55971457 -45409064 + MER2 DNA MER2_type 4 263 -81 2140 116 3 0 chr15 55971457 55971759 -45408762 + AluSx SINE Alu 1 303 -9 2265 63 0 23 chr15 55971759 55972060 -45408461 + AluY SINE Alu 1 294 -17 1876 128 22 95 chr15 55972060 55972183 -45408338 + MER2 DNA MER2_type 261 344 0 659 200 12 55 chr15 55972731 55972896 -45407625 + L1M4 LINE L1 4023 4180 -1966 489 169 0 0 chr15 55972898 55972981 -45407540 + MER49 LTR ERV1 182 264 -659 257 294 0 15 chr15 55973564 55973632 -45406889 - MIR SINE MIR -35 227 161 2191 100 0 0 chr15 55974108 55974407 -45406114 - AluSx SINE Alu -13 299 1 923 127 0 0 chr15 55974407 55974533 -45405988 - AluJo/FLAM SINE Alu -174 128 3 2261 91 3 0 chr15 55974786 55975083 -45405438 - AluSp SINE Alu -15 298 1 1732 203 78 5 chr15 55975233 55975398 -45405123 - MER63B DNA MER1_type -632 430 278 1614 78 9 22 chr15 55975398 55975630 -45404891 - AluSx SINE Alu -83 229 1 1732 203 78 5 chr15 55975630 55975863 -45404658 - MER63B DNA MER1_type -784 278 3 778 238 6 0 chr15 55975953 55976113 -45404408 - FRAM SINE Alu -7 169 9 1714 154 7 0 chr15 55976250 55976553 -45403968 - AluSx SINE Alu 0 305 1 193 129 71 0 chr15 55976633 55976703 -45403818 + (TA)n Simple_repeat Simple_repeat 2 76 0 2012 109 26 26 chr15 55977256 55977568 -45402953 + AluSx SINE Alu 1 312 0 340 248 8 112 chr15 55978034 55978159 -45402362 - MIR SINE MIR -70 192 81 2427 77 0 0 chr15 55978983 55979294 -45401227 - AluY SINE Alu 0 311 1 879 164 146 0 chr15 55980685 55980850 -45399671 + MER5A DNA MER1_type 1 189 0 348 83 0 0 chr15 55980949 55980997 -45399524 + (CA)n Simple_repeat Simple_repeat 2 49 0 1946 114 0 17 chr15 55981077 55981375 -45399146 + AluSc SINE Alu 1 293 -16 2076 99 10 14 chr15 55981563 55981699 -45398822 + AluSx SINE Alu 1 136 -176 1955 101 21 3 chr15 55981699 55981822 -45398699 + AluSc SINE Alu 1 120 -189 243 0 0 0 chr15 55981822 55981849 -45398672 + (CA)n Simple_repeat Simple_repeat 2 28 0 1955 101 21 3 chr15 55981849 55982012 -45398509 + AluSc SINE Alu 120 292 -17 2076 99 10 14 chr15 55982012 55982168 -45398353 + AluSx SINE Alu 136 292 -20 210 195 24 0 chr15 55982422 55982463 -45398058 - MIR3 SINE MIR -22 186 145 274 376 47 20 chr15 55982543 55982692 -45397829 - MIR SINE MIR -29 233 81 504 315 92 56 chr15 55982734 55983039 -45397482 - L3 LINE CR1 -85 1492 1177 228 196 43 0 chr15 55983811 55983857 -45396664 + MIR SINE MIR 93 140 -122 349 93 19 0 chr15 55983924 55983978 -45396543 - L1MA9 LINE L1 -8 6304 6250 182 204 0 61 chr15 55984002 55984051 -45396470 + L2 LINE L2 3223 3268 -4 271 293 60 15 chr15 55984596 55984729 -45395792 + MIR3 SINE MIR 51 189 -19 1117 210 81 35 chr15 55985085 55985395 -45395126 + MER5C DNA MER1_type 1 324 0 255 329 0 0 chr15 55985404 55985477 -45395044 - MIR3 SINE MIR -48 160 88 832 220 0 0 chr15 55985819 55985969 -45394552 - AluSg/x SINE Alu -30 282 133 1276 158 95 55 chr15 55985970 55986097 -45394424 - AluJo SINE Alu -28 284 164 183 114 0 0 chr15 55986097 55986132 -45394389 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1990 130 0 0 chr15 55986132 55986416 -45394105 - AluSx SINE Alu -28 284 1 1276 158 95 55 chr15 55986416 55986560 -45393961 - AluJo SINE Alu -147 165 1 1584 178 17 10 chr15 55986872 55987170 -45393351 + AluJo SINE Alu 1 300 -12 791 211 270 12 chr15 55987335 55987819 -45392702 + Tigger7 DNA MER2_type 8 2487 0 296 233 60 60 chr15 55989292 55989425 -45391096 + LTR33 LTR ERVL 44 176 -345 1959 97 36 4 chr15 55989788 55990067 -45390454 - AluSp SINE Alu -25 288 1 417 39 0 0 chr15 55990264 55990315 -45390206 + (TG)n Simple_repeat Simple_repeat 1 51 0 1731 144 0 63 chr15 55990318 55990651 -45389870 - AluJb SINE Alu 0 312 1 206 229 42 0 chr15 55991924 55991972 -45388549 - MIR SINE MIR -114 148 99 800 217 13 44 chr15 55991972 55992198 -45388323 - AluJo SINE Alu -15 297 79 2137 112 3 6 chr15 55992293 55992605 -45387916 + AluSx SINE Alu 1 311 -1 1364 227 7 28 chr15 55994780 55995071 -45385450 + MLT1A1 LTR MaLR 39 323 -42 363 258 75 0 chr15 55996553 55996673 -45383848 - L1ME4a LINE L1 -2 6119 5991 2144 111 0 7 chr15 55997603 55997909 -45382612 - AluSx SINE Alu -8 304 1 1806 147 7 0 chr15 55998195 55998488 -45382033 + AluJb SINE Alu 1 295 -17 1588 165 0 4 chr15 55998592 55998852 -45381669 - AluJo SINE Alu -53 259 1 311 168 40 48 chr15 55998866 55998991 -45381530 - L1MC5 LINE L1 -225 7736 7613 1840 125 7 4 chr15 55999808 56000120 -45380401 + AluSx SINE Alu 1 313 0 2285 80 0 0 chr15 56002002 56002291 -45378230 + AluSx SINE Alu 1 289 -23 232 206 44 15 chr15 56002460 56002528 -45377993 + MER116 DNA Mariner 1 70 -10 658 237 109 63 chr15 56003118 56003578 -45376943 + L1ME4a LINE L1 5613 6093 -28 269 339 51 17 chr15 56004934 56005052 -45375469 - MIR SINE MIR -20 242 121 180 0 0 0 chr15 56005980 56006000 -45374521 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2121 68 4 7 chr15 56006004 56006284 -45374237 - AluY SINE Alu -30 281 3 1688 169 16 13 chr15 56006376 56006683 -45373838 - AluJo SINE Alu -4 308 1 369 354 61 6 chr15 56007276 56007440 -45373081 + MER5B DNA MER1_type 1 173 -5 415 179 217 9 chr15 56008388 56008494 -45372027 + FLAM_C SINE Alu 10 137 -6 214 216 34 23 chr15 56008498 56008554 -45371967 + A-rich Low_complexity Low_complexity 3 62 -29 1782 138 3 46 chr15 56008554 56008880 -45371641 + AluSx SINE Alu 1 312 0 214 216 34 23 chr15 56008880 56008911 -45371610 + A-rich Low_complexity Low_complexity 62 91 0 864 185 0 0 chr15 56008911 56009062 -45371459 + FRAM SINE Alu 1 146 -30 252 0 0 0 chr15 56009065 56009093 -45371428 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1873 218 69 30 chr15 56009364 56009855 -45370666 + L1MC4 LINE L1 6780 7289 -753 593 251 97 11 chr15 56010414 56010589 -45369932 - MIR SINE MIR -14 248 59 208 297 89 20 chr15 56011454 56011555 -45368966 - MIR SINE MIR -50 212 105 303 309 37 68 chr15 56011681 56011877 -45368644 + MIR SINE MIR 16 206 -56 227 266 9 83 chr15 56012427 56012536 -45367985 + L2 LINE L2 2439 2539 -775 22 35 0 0 chr15 56012543 56012572 -45367949 + AT_rich Low_complexity Low_complexity 1 29 0 2175 93 47 17 chr15 56013161 56013461 -45367060 - AluSx SINE Alu -3 309 1 1341 182 0 0 chr15 56014051 56014271 -45366250 + AluJb SINE Alu 81 300 -12 229 307 13 13 chr15 56014451 56014526 -45365995 + MIR SINE MIR 20 94 -168 532 329 87 24 chr15 56016629 56017088 -45363433 + L2 LINE L2 2810 3297 -16 407 290 108 6 chr15 56017103 56017279 -45363242 - MIR SINE MIR -19 243 50 206 286 52 0 chr15 56018503 56018580 -45361941 + L2 LINE L2 2900 2980 -292 2200 120 0 3 chr15 56019807 56020115 -45360406 - AluSq SINE Alu -6 307 1 2308 109 28 0 chr15 56020435 56020756 -45359765 - MER1B DNA MER1_type -9 330 1 630 184 0 71 chr15 56020958 56021099 -45359422 - FLAM_C SINE Alu 0 133 3 6547 116 11 47 chr15 56021121 56021618 -45358903 - L1MA2 LINE L1 -11 6293 5780 2064 134 7 0 chr15 56021618 56021908 -45358613 - AluSx SINE Alu -20 292 1 6547 116 11 47 chr15 56021908 56021963 -45358558 - L1MA2 LINE L1 -524 5780 5725 1912 167 0 13 chr15 56021963 56022262 -45358259 - AluSx SINE Alu -17 295 1 6547 116 11 47 chr15 56022262 56022877 -45357644 - L1MA2 LINE L1 -579 5725 5162 2239 110 3 0 chr15 56022877 56023168 -45357353 - AluSx SINE Alu -20 292 1 817 181 0 0 chr15 56023195 56023333 -45357188 + FLAM_C SINE Alu 1 138 -5 1022 198 10 10 chr15 56023369 56023566 -45356955 + MER20 DNA MER1_type 22 218 -1 1360 192 72 7 chr15 56024090 56024366 -45356155 + AluJo SINE Alu 6 299 -13 4237 173 51 15 chr15 56024821 56025696 -45354825 + L1MB8 LINE L1 5272 6178 0 2283 101 0 0 chr15 56026015 56026333 -45354188 + AluSx SINE Alu 1 318 0 1700 185 14 3 chr15 56026672 56026959 -45353562 - AluJb SINE Alu -21 291 2 257 164 0 18 chr15 56026966 56027021 -45353500 + CT-rich Low_complexity Low_complexity 1 54 0 370 167 0 0 chr15 56027022 56027082 -45353439 - Alu SINE Alu -3 298 239 404 167 0 0 chr15 56027095 56027167 -45353354 - Alu SINE Alu -1 311 240 1674 133 4 11 chr15 56027171 56027434 -45353087 - AluSx SINE Alu -7 305 45 210 155 311 19 chr15 56028187 56028290 -45352231 + MIR SINE MIR 8 140 -122 997 83 0 0 chr15 56028774 56028895 -45351626 + AluSg SINE Alu 1 121 -189 375 73 0 0 chr15 56028919 56028974 -45351547 + (GA)n Simple_repeat Simple_repeat 2 56 0 267 241 0 0 chr15 56030425 56030483 -45350038 + (TG)n Simple_repeat Simple_repeat 1 58 0 199 305 195 0 chr15 56030549 56030667 -45349854 - MIR3 SINE MIR -19 189 49 873 204 16 0 chr15 56030687 56030873 -45349648 + MER5A DNA MER1_type 1 189 0 459 188 0 0 chr15 56030924 56031004 -45349517 - FRAM SINE Alu -35 141 62 436 340 128 11 chr15 56031076 56031458 -45349063 + L3 LINE CR1 1094 1520 -57 2040 129 7 3 chr15 56031494 56031788 -45348733 + AluSg SINE Alu 1 295 -15 2408 95 0 0 chr15 56034585 56034891 -45345630 - AluSx SINE Alu -6 306 1 566 296 20 20 chr15 56035086 56035289 -45345232 - MIR SINE MIR -58 204 2 1683 181 3 24 chr15 56035465 56035763 -45344758 - AluJb SINE Alu -20 292 1 336 322 66 0 chr15 56035967 56036088 -45344433 + MIR3 SINE MIR 41 169 -39 2003 128 6 28 chr15 56036131 56036450 -45344071 + AluSx SINE Alu 1 312 0 875 151 91 82 chr15 56036619 56036707 -45343814 - MER46A DNA MER2_type -2497 234 148 1974 111 50 4 chr15 56036707 56036986 -45343535 - AluSx SINE Alu -20 292 1 875 151 91 82 chr15 56036986 56037129 -45343392 - MER46A DNA MER2_type -2583 148 1 27 62 0 0 chr15 56037187 56037235 -45343286 + AT_rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr15 56037282 56037311 -45343210 + AT_rich Low_complexity Low_complexity 1 29 0 762 178 31 0 chr15 56038110 56038239 -45342282 + FLAM_C SINE Alu 1 133 0 371 228 44 132 chr15 56038323 56038573 -45341948 - MIR SINE MIR -22 240 13 22 0 0 0 chr15 56038608 56038630 -45341891 + AT_rich Low_complexity Low_complexity 1 22 0 1591 162 56 7 chr15 56038713 56038997 -45341524 - AluJb SINE Alu -14 298 1 2464 80 3 0 chr15 56039005 56039307 -45341214 - AluSp SINE Alu -10 303 1 1826 166 0 13 chr15 56040347 56040649 -45339872 - AluJb SINE Alu -14 298 1 598 197 0 73 chr15 56040742 56040879 -45339642 - MER20 DNA MER1_type 0 219 93 2311 92 14 0 chr15 56040984 56041277 -45339244 - AluSc SINE Alu -12 297 1 230 331 118 8 chr15 56041316 56041443 -45339078 + L2 LINE L2 3173 3313 0 22 0 0 0 chr15 56041671 56041693 -45338828 + AT_rich Low_complexity Low_complexity 1 22 0 967 182 6 11 chr15 56042754 56042930 -45337591 - FAM SINE Alu 0 175 1 1963 114 0 109 chr15 56046941 56047291 -45333230 - AluJb SINE Alu 0 312 1 2289 108 0 0 chr15 56048043 56048340 -45332181 + AluSg SINE Alu 1 297 -13 915 265 36 23 chr15 56048411 56048717 -45331804 + L2 LINE L2 2010 2319 -995 519 311 5 24 chr15 56048844 56049050 -45331471 + L2 LINE L2 2684 2885 -429 202 324 7 81 chr15 56049037 56049173 -45331348 - L2 LINE L2 -623 2691 2566 * 954 221 74 135 chr15 56049340 56049530 -45330991 + MLT1C LTR MaLR 1 201 -266 928 160 0 0 chr15 56049530 56049674 -45330847 - U4 snRNA snRNA -1 144 1 954 221 74 135 chr15 56049674 56049971 -45330550 + MLT1C LTR MaLR 201 458 -9 2343 84 0 0 chr15 56050023 56050357 -45330164 - AluSx SINE Alu 0 334 1 1722 164 25 7 chr15 56050361 56050647 -45329874 - AluJo SINE Alu -21 291 1 374 318 117 31 chr15 56052147 56052370 -45328151 - MIR SINE MIR -11 251 10 325 278 24 24 chr15 56052722 56052848 -45327673 + MIR3 SINE MIR 30 155 -53 600 268 23 35 chr15 56053096 56053336 -45327185 + MIR SINE MIR 21 262 0 209 119 24 0 chr15 56053415 56053457 -45327064 + (TA)n Simple_repeat Simple_repeat 1 43 0 261 0 0 0 chr15 56053481 56053510 -45327011 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 195 42 0 0 chr15 56053530 56053554 -45326967 + (TG)n Simple_repeat Simple_repeat 2 25 0 330 26 0 0 chr15 56053572 56053611 -45326910 + (CA)n Simple_repeat Simple_repeat 2 40 0 2265 229 111 0 chr15 56053636 56054133 -45326388 + MLT1F1 LTR MaLR 3 554 -13 2142 130 0 7 chr15 56054406 56054714 -45325807 - AluJb SINE Alu -6 306 1 1033 132 7 0 chr15 56056651 56056862 -45323659 + ALR/Alpha Satellite centromeric 1 212 -17 2212 129 0 0 chr15 56057054 56057363 -45323158 + AluSx SINE Alu 1 309 -3 403 257 82 55 chr15 56057511 56057694 -45322827 + L1MC/D LINE L1 5632 5819 -1989 543 207 9 0 chr15 56057695 56057811 -45322710 + FLAM_C SINE Alu 1 117 -26 279 130 29 14 chr15 56057876 56057945 -45322576 + (TA)n Simple_repeat Simple_repeat 1 70 0 1589 104 5 14 chr15 56057984 56058196 -45322325 - AluSx SINE Alu -102 210 1 2559 71 0 0 chr15 56062523 56062832 -45317689 - AluY SINE Alu -2 309 1 204 135 0 27 chr15 56063225 56063262 -45317259 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 2082 150 0 0 chr15 56063411 56063718 -45316803 + AluJb SINE Alu 1 307 -5 1900 106 53 3 chr15 56065083 56065367 -45315154 + AluSx SINE Alu 1 298 -14 40 49 0 0 chr15 56065373 56065434 -45315087 + AT_rich Low_complexity Low_complexity 1 61 0 510 234 90 24 chr15 56066109 56066276 -45314245 + MER5B DNA MER1_type 1 178 0 22 70 0 0 chr15 56066799 56066842 -45313679 + AT_rich Low_complexity Low_complexity 1 43 0 226 169 143 26 chr15 56067003 56067080 -45313441 - L1P1 LINE L1 -678 5477 5392 324 111 0 0 chr15 56067098 56067152 -45313369 + (TG)n Simple_repeat Simple_repeat 2 55 0 530 219 185 0 chr15 56069164 56069315 -45311206 - MER5A DNA MER1_type -2 187 9 207 100 0 0 chr15 56070132 56070162 -45310359 + (TCCA)n Simple_repeat Simple_repeat 4 33 0 2568 63 0 0 chr15 56070266 56070568 -45309953 + AluSc SINE Alu 1 302 -7 968 166 70 9 chr15 56070731 56070960 -45309561 + Charlie5 DNA MER1_type 2382 2624 0 657 66 0 0 chr15 56071095 56071186 -45309335 + (TGGA)n Simple_repeat Simple_repeat 3 93 0 1904 157 0 10 chr15 56071420 56071725 -45308796 + AluJb SINE Alu 1 302 -10 1988 284 45 22 chr15 56072166 56072944 -45307577 - L1MC4a LINE L1 -1756 6052 5257 2241 64 0 14 chr15 56072967 56073248 -45307273 + AluSx SINE Alu 26 302 -10 495 33 0 0 chr15 56073253 56073314 -45307207 + (CA)n Simple_repeat Simple_repeat 2 62 0 213 65 0 0 chr15 56073630 56073661 -45306860 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 268 262 93 33 chr15 56073803 56073986 -45306535 + L1ME4a LINE L1 5734 5927 -194 2143 125 3 0 chr15 56075463 56075751 -45304770 - AluSx SINE Alu -23 289 1 2222 101 7 0 chr15 56075805 56076091 -45304430 + AluSq SINE Alu 2 289 -24 28 17 0 69 chr15 56076346 56076404 -45304117 + AT_rich Low_complexity Low_complexity 1 54 0 992 171 12 0 chr15 56176639 56176803 -45203718 + FRAM SINE Alu 1 166 0 1616 152 4 11 chr15 56177385 56177661 -45202860 + AluJo SINE Alu 1 274 -38 1787 147 35 3 chr15 56178321 56178607 -45201914 + AluJb SINE Alu 1 295 -17 2110 119 0 0 chr15 56179179 56179473 -45201048 + AluSx SINE Alu 1 294 -18 1127 138 62 97 chr15 56180046 56180174 -45200347 + AluJo SINE Alu 11 142 -170 1997 129 6 26 chr15 56180174 56180485 -45200036 - AluSx SINE Alu -7 305 1 1127 138 62 97 chr15 56180485 56180646 -45199875 + AluJo SINE Alu 142 290 -22 1931 107 13 10 chr15 56181071 56181370 -45199151 + AluSg SINE Alu 1 300 -10 26 0 0 0 chr15 56181436 56181462 -45199059 + AT_rich Low_complexity Low_complexity 1 26 0 454 245 180 29 chr15 56181916 56182194 -45198327 - L1MC4a LINE L1 -1882 5926 5607 2193 104 0 10 chr15 56182205 56182514 -45198007 - AluSc SINE Alu -3 306 1 307 212 121 30 chr15 56184229 56184328 -45196193 + MIR SINE MIR 121 228 -34 269 197 14 0 chr15 56184328 56184399 -45196122 + GA-rich Low_complexity Low_complexity 1 72 0 2279 81 3 7 chr15 56184729 56185037 -45195484 + AluSc SINE Alu 1 307 -2 1393 212 55 41 chr15 56185320 56185683 -45194838 - MLT1B LTR MaLR 0 390 23 1843 129 0 42 chr15 56186058 56186368 -45194153 + AluSx SINE Alu 1 297 -15 24 0 0 0 chr15 56186368 56186392 -45194129 + AT_rich Low_complexity Low_complexity 1 24 0 447 118 13 53 chr15 56187226 56187302 -45193219 + Charlie3 DNA MER1_type 2634 2706 -4 1834 207 56 11 chr15 56187755 56188199 -45192322 - MLT1C LTR MaLR -3 464 1 261 353 52 7 chr15 56189154 56189290 -45191231 + MIR SINE MIR 102 243 -19 1087 149 0 6 chr15 56189338 56189513 -45191008 - FRAM SINE Alu -6 170 1 33 0 0 0 chr15 56189575 56189608 -45190913 + AT_rich Low_complexity Low_complexity 1 33 0 1996 121 3 13 chr15 56189625 56189786 -45190735 - AluSq SINE Alu -18 295 137 2221 97 0 0 chr15 56189786 56190086 -45190435 - AluSx SINE Alu -12 300 1 1996 121 3 13 chr15 56190086 56190222 -45190299 - AluSq SINE Alu -176 137 1 261 0 0 0 chr15 56190224 56190253 -45190268 + (T)n Simple_repeat Simple_repeat 1 29 0 341 281 23 39 chr15 56190844 56190972 -45189549 - MIR SINE MIR -20 242 117 395 257 28 18 chr15 56191381 56191490 -45189031 + MER94 DNA DNA 1 110 -24 274 325 49 8 chr15 56191570 56191693 -45188828 + MIR SINE MIR 65 192 -70 584 196 5 111 chr15 56192327 56192399 -45188122 + MER104 DNA Tc2 3 81 -1817 2073 109 10 0 chr15 56192399 56192693 -45187828 + AluSq SINE Alu 3 299 -14 584 196 5 111 chr15 56192693 56192809 -45187712 + MER104 DNA Tc2 81 171 -9 21 0 0 0 chr15 56192881 56192902 -45187619 + AT_rich Low_complexity Low_complexity 1 21 0 1977 128 0 0 chr15 56193320 56193609 -45186912 - AluSx SINE Alu -2 310 22 396 189 0 133 chr15 56193796 56193821 -45186700 + L1MB5 LINE L1 6051 6078 -96 2210 107 3 0 chr15 56193821 56194131 -45186390 + AluY SINE Alu 1 311 0 396 189 0 133 chr15 56194131 56194183 -45186338 + L1MB5 LINE L1 6078 6103 -71 1737 172 0 3 chr15 56194183 56194491 -45186030 - AluJo SINE Alu -5 307 1 396 189 0 133 chr15 56194491 56194555 -45185966 + L1MB5 LINE L1 6103 6174 0 488 16 16 0 chr15 56194665 56194726 -45185795 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 726 87 0 0 chr15 56194786 56194889 -45185632 + (TAGA)n Simple_repeat Simple_repeat 1 103 0 451 245 199 7 chr15 56195368 56195519 -45185002 + MER5A DNA MER1_type 10 189 0 2631 16 7 3 chr15 56195577 56195887 -45184634 + AluY SINE Alu 1 311 0 754 228 71 47 chr15 56196517 56196940 -45183581 - LTR48B LTR ERV1 0 644 123 471 240 0 0 chr15 56196927 56197023 -45183498 - MER34 LTR ERV1 -446 96 1 * 2296 75 0 3 chr15 56197050 56197344 -45183177 - AluYa5 SINE Alu -18 293 1 2197 104 0 3 chr15 56197346 56197645 -45182876 - AluSg SINE Alu -11 299 2 1189 220 124 23 chr15 56197652 56198004 -45182517 + MLT1D LTR MaLR 123 505 0 489 248 33 0 chr15 56198111 56198232 -45182289 - LTR67 LTR ERVL -52 505 381 229 254 30 0 chr15 56198264 56198331 -45182190 - L1MC4 LINE L1 -2 8040 7972 749 347 37 13 chr15 56198334 56198717 -45181804 - LTR16C LTR ERVL -3 488 97 804 255 51 0 chr15 56198984 56199200 -45181321 + Charlie2 DNA MER1_type 2623 2849 -13 273 29 0 0 chr15 56199611 56199645 -45180876 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2044 117 0 37 chr15 56199653 56199977 -45180544 + AluSx SINE Alu 1 312 0 1657 125 42 0 chr15 56200154 56200394 -45180127 - MER1B DNA MER1_type -89 250 1 1665 159 67 85 chr15 56200557 56200959 -45179562 + MSTD LTR MaLR 2 396 0 183 297 109 0 chr15 56201227 56201355 -45179166 - L2 LINE L2 -217 3055 2914 755 140 52 15 chr15 56201398 56201534 -45178987 - FRAM SINE Alu -17 159 19 410 181 0 0 chr15 56201556 56201628 -45178893 + MER5A DNA MER1_type 4 75 -114 1288 121 103 9 chr15 56201629 56201746 -45178775 + AluY SINE Alu 1 106 -205 228 35 0 0 chr15 56201746 56201775 -45178746 + (TAA)n Simple_repeat Simple_repeat 1 29 0 1288 121 103 9 chr15 56201775 56201889 -45178632 + AluY SINE Alu 106 254 -57 646 144 0 64 chr15 56201890 56202015 -45178506 + MER5A DNA MER1_type 73 189 0 2160 65 0 7 chr15 56202469 56202746 -45177775 - L1PA5 LINE L1 -64 6090 5816 519 296 59 12 chr15 56203323 56203492 -45177029 + MIR SINE MIR 7 183 -79 2005 110 6 25 chr15 56204227 56204545 -45175976 + AluSx SINE Alu 1 312 0 350 25 0 0 chr15 56205333 56205373 -45175148 + (T)n Simple_repeat Simple_repeat 1 40 0 294 245 189 0 chr15 56207028 56207134 -45173387 - MLT1J LTR MaLR -73 438 313 462 250 25 17 chr15 56207224 56207344 -45173177 - MLT1J LTR MaLR -358 153 33 1923 153 0 3 chr15 56207553 56207861 -45172660 + AluSx SINE Alu 1 307 -5 738 277 13 43 chr15 56207921 56208156 -45172365 + MER90 LTR ERV1 1 228 -386 220 264 94 66 chr15 56208686 56208765 -45171756 + MIR SINE MIR 60 144 -118 2117 128 0 0 chr15 56208765 56209078 -45171443 + AluSq SINE Alu 1 313 0 220 264 94 66 chr15 56209078 56209104 -45171417 + MIR SINE MIR 144 168 -94 1760 91 4 4 chr15 56209608 56209850 -45170671 - AluSq SINE Alu -71 242 1 364 270 103 38 chr15 56210032 56210172 -45170349 + MIR3 SINE MIR 33 181 -27 318 281 62 16 chr15 56210215 56210462 -45170059 - MARNA DNA Mariner -16 570 261 2114 104 3 3 chr15 56210512 56210810 -45169711 - AluSq SINE Alu -15 298 1 658 235 78 0 chr15 56210821 56211000 -45169521 - AluJo SINE Alu 0 312 120 225 0 0 0 chr15 56211529 56211554 -45168967 + (A)n Simple_repeat Simple_repeat 1 25 0 326 210 108 68 chr15 56212351 56212370 -45168151 + Charlie8 DNA MER1_type 89 106 -235 2246 93 3 0 chr15 56212370 56212672 -45167849 + AluSq SINE Alu 1 303 -10 326 210 108 68 chr15 56212672 56212802 -45167719 + Charlie8 DNA MER1_type 106 234 -107 880 79 40 8 chr15 56212866 56212992 -45167529 + AluSg SINE Alu 1 130 -180 1946 109 0 7 chr15 56212996 56213289 -45167232 + AluSg SINE Alu 1 291 -19 189 74 0 0 chr15 56214415 56214442 -45166079 + (CA)n Simple_repeat Simple_repeat 2 28 0 195 42 0 0 chr15 56214489 56214513 -45166008 + (TTC)n Simple_repeat Simple_repeat 2 25 0 873 103 0 24 chr15 56214517 56214643 -45165878 - FLAM_C SINE Alu -20 123 1 1323 111 13 60 chr15 56215047 56215282 -45165239 - AluJo SINE Alu -15 297 74 2295 70 0 3 chr15 56215291 56215590 -45164931 - AluY SINE Alu -13 298 1 466 164 0 0 chr15 56215593 56215666 -45164855 - AluJo SINE Alu -219 93 21 2424 44 3 3 chr15 56215791 56216089 -45164432 - AluY SINE Alu -13 298 1 22 70 0 0 chr15 56216200 56216243 -45164278 + AT_rich Low_complexity Low_complexity 1 43 0 1000 311 38 5 chr15 56216464 56216837 -45163684 + Tigger8 DNA MER2_type 14 398 -268 273 295 53 84 chr15 56216837 56217027 -45163494 - MIR SINE MIR 0 262 79 450 367 32 8 chr15 56217027 56217275 -45163246 + Tigger8 DNA MER2_type 404 657 -9 224 288 182 0 chr15 56217317 56217383 -45163138 + L2 LINE L2 3196 3273 -40 1663 137 88 11 chr15 56217516 56217800 -45162721 + AluJo SINE Alu 3 308 -4 2100 151 0 0 chr15 56218624 56218935 -45161586 + AluSx SINE Alu 1 311 -1 2170 126 0 0 chr15 56218944 56219237 -45161284 + AluSx SINE Alu 1 293 -19 738 243 14 0 chr15 56219336 56219534 -45160987 + FRAM SINE Alu 1 197 0 1599 169 39 26 chr15 56219845 56220153 -45160368 + AluJb SINE Alu 1 312 0 2109 113 0 3 chr15 56220667 56220975 -45159546 - AluSx SINE Alu 0 307 1 241 291 133 18 chr15 56221317 56221482 -45159039 + MIR SINE MIR 78 261 -1 2150 131 0 0 chr15 56221582 56221880 -45158641 - AluSx SINE Alu -14 298 1 2146 112 0 16 chr15 56221883 56222196 -45158325 - AluSq SINE Alu 0 313 6 1773 173 14 0 chr15 56222448 56222743 -45157778 - AluJo SINE Alu -13 299 1 799 305 117 5 chr15 56222745 56223240 -45157281 + L2 LINE L2 2669 3225 -88 2043 136 0 0 chr15 56223345 56223639 -45156882 + AluSx SINE Alu 1 294 -18 364 343 29 0 chr15 56224268 56224408 -45156113 - MIR SINE MIR -66 196 53 1057 240 50 0 chr15 56224483 56224741 -45155780 - L1ME1 LINE L1 -5 6161 5891 23 78 0 0 chr15 56224872 56224923 -45155598 + AT_rich Low_complexity Low_complexity 1 51 0 2521 77 0 3 chr15 56225269 56225581 -45154940 - AluY SINE Alu 0 311 1 945 142 8 0 chr15 56226399 56226533 -45153988 + AluSq/x SINE Alu 1 135 -178 2112 123 0 10 chr15 56226533 56226842 -45153679 + AluSg SINE Alu 1 306 -4 711 109 27 9 chr15 56226891 56227001 -45153520 + HY1 scRNA scRNA 1 112 0 35 0 0 0 chr15 56227001 56227036 -45153485 + AT_rich Low_complexity Low_complexity 1 35 0 215 274 177 18 chr15 56227693 56227806 -45152715 - MIR SINE MIR 0 262 132 1937 136 20 0 chr15 56228006 56228308 -45152213 + AluSq SINE Alu 1 308 -5 294 165 32 17 chr15 56228331 56228404 -45152117 - MIR SINE MIR -78 130 49 1862 134 6 54 chr15 56228722 56229036 -45151485 - AluSx SINE Alu -13 299 1 615 144 0 0 chr15 56229621 56229711 -45150810 + AluJ/FLAM SINE Alu 2 91 -221 2109 100 3 10 chr15 56230253 56230543 -45149978 + AluSx SINE Alu 1 288 -24 248 297 178 0 chr15 56230654 56230767 -45149754 - MIR SINE MIR -65 143 21 2464 72 0 7 chr15 56231054 56231358 -45149163 + AluY SINE Alu 1 302 -9 36 0 0 21 chr15 56232174 56232194 -45148327 + AT_rich Low_complexity Low_complexity 1 20 -26 2276 112 0 0 chr15 56232194 56232490 -45148031 + AluSx SINE Alu 1 296 -16 36 0 0 21 chr15 56232490 56232516 -45148005 + AT_rich Low_complexity Low_complexity 20 46 0 582 228 130 91 chr15 56232993 56233401 -45147120 - MLT1H LTR MaLR -7 542 119 392 218 89 8 chr15 56234230 56234354 -45146167 - L1MC5 LINE L1 -105 7856 7723 875 154 0 0 chr15 56234702 56234832 -45145689 - FLAM_C SINE Alu -3 130 1 1363 192 59 39 chr15 56234834 56235003 -45145518 - AluJo SINE Alu -20 292 113 394 88 29 0 chr15 56235003 56235071 -45145450 + (TA)n Simple_repeat Simple_repeat 2 71 0 1363 192 59 39 chr15 56235071 56235187 -45145334 - AluJo SINE Alu -199 113 1 281 274 0 78 chr15 56235370 56235472 -45145049 - MIR SINE MIR -85 123 30 208 191 0 64 chr15 56236421 56236468 -45144053 + L2 LINE L2 3136 3179 -93 1600 189 48 3 chr15 56236592 56236905 -45143616 - L1MB7 LINE L1 -21 6163 5837 2052 132 7 10 chr15 56237027 56237337 -45143184 - AluSx SINE Alu -3 309 1 269 167 0 17 chr15 56237714 56237774 -45142747 + A-rich Low_complexity Low_complexity 2 60 0 23 33 0 0 chr15 56239070 56239100 -45141421 + GC_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr15 56242054 56242081 -45138440 + AT_rich Low_complexity Low_complexity 1 27 0 404 260 40 110 chr15 56243310 56243510 -45137011 - MIR SINE MIR -27 235 50 584 134 168 17 chr15 56243872 56243991 -45136530 + FLAM_C SINE Alu 2 138 -5 1691 133 4 65 chr15 56245183 56245462 -45135059 + AluSx SINE Alu 33 294 -18 416 174 0 0 chr15 56245586 56245655 -45134866 - AluJ/FLAM SINE Alu -242 70 2 848 127 40 0 chr15 56245655 56245805 -45134716 - L1MA7 LINE L1 -47 6244 6089 844 254 42 5 chr15 56245823 56246036 -45134485 + MER58A DNA MER1_type 4 224 0 2123 94 24 17 chr15 56246061 56246349 -45134172 - AluSc SINE Alu -18 291 2 417 245 91 7 chr15 56246545 56246688 -45133833 + MIR SINE MIR 34 188 -74 189 0 0 0 chr15 56247184 56247205 -45133316 + (A)n Simple_repeat Simple_repeat 1 21 0 196 250 145 0 chr15 56248440 56248516 -45132005 + MIR SINE MIR 33 120 -88 2511 79 0 3 chr15 56248601 56248906 -45131615 + AluSc SINE Alu 1 304 -5 2416 83 3 13 chr15 56248965 56249279 -45131242 + AluY SINE Alu 1 311 0 1286 184 38 52 chr15 56249941 56250229 -45130292 - AluJb SINE Alu -6 306 23 2336 85 16 0 chr15 56250989 56251294 -45129227 + AluSg SINE Alu 1 310 0 1250 107 112 13 chr15 56251334 56251567 -45128954 - L1MA2 LINE L1 0 6304 6049 610 141 33 0 chr15 56251572 56251664 -45128857 - U6 snRNA snRNA -11 96 2 4985 129 32 36 chr15 56251666 56252758 -45127763 - L1MA3 LINE L1 -224 7500 6401 15388 110 35 7 chr15 56252758 56255064 -45125457 - L1MA3 LINE L1 -3896 3669 1299 667 193 0 22 chr15 56255632 56255767 -45124754 - AluJo SINE Alu -91 221 90 253 269 102 85 chr15 56256817 56256892 -45123629 + L1M4 LINE L1 4367 4439 -1707 1815 150 44 10 chr15 56256892 56257186 -45123335 + AluJb SINE Alu 1 304 -8 253 269 102 85 chr15 56257186 56257321 -45123200 + L1M4 LINE L1 4439 4570 -1576 1947 165 9 15 chr15 56257321 56257660 -45122861 + MER1B DNA MER1_type 1 337 0 253 269 102 85 chr15 56257660 56258121 -45122400 + L1M4 LINE L1 4570 5051 -1095 273 342 98 22 chr15 56259482 56260023 -45120498 - L2 LINE L2 -426 2888 2307 993 288 52 76 chr15 56260673 56260942 -45119579 + MLT1J LTR MaLR 1 275 -236 2258 123 0 3 chr15 56260942 56261252 -45119269 - AluSg SINE Alu -1 309 1 993 288 52 76 chr15 56261252 56261352 -45119169 + MLT1J LTR MaLR 275 376 -135 2155 145 3 0 chr15 56261352 56261663 -45118858 - AluSx SINE Alu 0 312 1 993 288 52 76 chr15 56261663 56261816 -45118705 + MLT1J LTR MaLR 376 511 0 715 119 0 18 chr15 56262781 56262890 -45117631 - AluSq/x SINE Alu -205 108 2 252 314 39 20 chr15 56262974 56263076 -45117445 + L2 LINE L2 3203 3306 -7 804 162 7 27 chr15 56263202 56263433 -45117088 + AluJb SINE Alu 167 394 0 369 224 0 0 chr15 56263979 56264046 -45116475 + AluJ/FLAM SINE Alu 1 67 -235 1159 176 19 9 chr15 56264433 56264643 -45115878 + AluJo SINE Alu 1 212 -100 1343 86 0 11 chr15 56264750 56264925 -45115596 + AluSq SINE Alu 140 312 -1 1220 189 121 18 chr15 56264947 56265227 -45115294 + AluJb SINE Alu 1 309 -3 1966 148 0 10 chr15 56265799 56266097 -45114424 + AluJb SINE Alu 2 296 -16 21 0 0 0 chr15 56266565 56266586 -45113935 + AT_rich Low_complexity Low_complexity 1 21 0 2327 112 3 3 chr15 56268029 56268342 -45112179 - AluSp SINE Alu 0 313 1 1327 130 0 29 chr15 56268430 56268637 -45111884 - AluJo SINE Alu 0 312 112 384 293 83 8 chr15 56269153 56269286 -45111235 - MIR SINE MIR -93 169 27 383 205 238 8 chr15 56269335 56269457 -45111064 + MER5A DNA MER1_type 19 168 -21 223 352 94 28 chr15 56270114 56270327 -45110194 + L2 LINE L2 2565 2791 -523 368 250 106 0 chr15 56270389 56270493 -45110028 + L2 LINE L2 3199 3313 0 2478 62 0 10 chr15 56270618 56270924 -45109597 + AluY SINE Alu 1 303 -8 2326 98 3 0 chr15 56272886 56273181 -45107340 + AluSx SINE Alu 1 296 -16 1986 146 0 13 chr15 56273699 56274014 -45106507 - AluJo SINE Alu -1 311 1 977 257 54 96 chr15 56274071 56274383 -45106138 + L1MC4a LINE L1 5491 5815 -1993 2057 131 10 0 chr15 56274383 56274674 -45105847 + AluSx SINE Alu 1 294 -18 977 257 54 96 chr15 56274674 56274778 -45105743 + L1MC4a LINE L1 5815 5881 -1927 2261 107 3 0 chr15 56274778 56275076 -45105445 + AluSq SINE Alu 1 299 -14 977 257 54 96 chr15 56275076 56275199 -45105322 + L1MC4a LINE L1 5881 6008 -1800 331 209 0 51 chr15 56275448 56275526 -45104995 + AluS SINE Alu 1 61 -241 1004 135 6 35 chr15 56275526 56275696 -45104825 + AluJo/FRAM SINE Alu 137 301 -1 3333 140 29 24 chr15 56275718 56276269 -45104252 - MER41C LTR ERV1 0 554 1 1628 99 132 12 chr15 56276308 56276551 -45103970 + AluSg SINE Alu 1 272 -38 738 164 8 16 chr15 56276922 56277050 -45103471 - FLAM_A SINE Alu -6 127 1 2086 137 0 3 chr15 56277060 56277359 -45103162 - AluJo SINE Alu -14 298 1 330 87 0 0 chr15 56277776 56277822 -45102699 + (CA)n Simple_repeat Simple_repeat 2 47 0 2164 121 3 13 chr15 56277964 56278277 -45102244 + AluSx SINE Alu 3 312 0 789 138 0 0 chr15 56278290 56278406 -45102115 - FLAM_C SINE Alu -17 116 1 523 118 18 73 chr15 56279060 56279170 -45101351 + U13 snRNA snRNA 1 104 0 2220 124 0 7 chr15 56279219 56279526 -45100995 - AluSx SINE Alu -7 305 1 1731 267 40 25 chr15 56279858 56280333 -45100188 - MER115 DNA AcHobo -31 662 181 2016 95 0 8 chr15 56280804 56281066 -45099455 + AluSq SINE Alu 1 260 -53 189 74 0 0 chr15 56281083 56281110 -45099411 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 303 28 0 0 chr15 56281588 56281624 -45098897 + (CA)n Simple_repeat Simple_repeat 1 36 0 2360 89 10 0 chr15 56282252 56282556 -45097965 - AluSg SINE Alu -3 307 1 536 306 25 10 chr15 56283035 56283234 -45097287 - MIR SINE MIR -3 259 58 180 200 0 0 chr15 56283234 56283274 -45097247 + (ATGGTG)n Simple_repeat Simple_repeat 4 43 0 451 287 0 0 chr15 56283284 56283413 -45097108 - MIR SINE MIR -11 251 123 753 187 0 0 chr15 56283953 56284087 -45096434 - AluSg/x SINE Alu -2 310 177 186 205 84 60 chr15 56284723 56284806 -45095715 + MIR SINE MIR 49 133 -129 1089 218 14 0 chr15 56285185 56285401 -45095120 + MER20 DNA MER1_type 1 219 0 787 216 74 61 chr15 56285435 56285666 -45094855 - Charlie8 DNA MER1_type -2183 234 1 1274 60 18 0 chr15 56285965 56286131 -45094390 + L1PA10 LINE L1 6000 6168 0 526 221 63 0 chr15 56286137 56286288 -45094233 + MIR SINE MIR 55 214 -48 21 0 0 0 chr15 56286364 56286385 -45094136 + AT_rich Low_complexity Low_complexity 1 21 0 434 312 39 13 chr15 56287695 56287849 -45092672 - L2 LINE L2 0 3272 3115 585 223 50 59 chr15 56288385 56288587 -45091934 - MIR SINE MIR -35 227 28 834 216 88 5 chr15 56289258 56289462 -45091059 - MIR SINE MIR -7 255 35 2190 133 0 0 chr15 56289598 56289900 -45090621 + AluSx SINE Alu 1 302 -10 26 0 0 0 chr15 56289966 56289992 -45090529 + AT_rich Low_complexity Low_complexity 1 26 0 5194 171 12 25 chr15 56290044 56290191 -45090330 + L1PA16 LINE L1 4124 4271 -1895 2048 146 7 0 chr15 56290191 56290500 -45090021 + AluSp SINE Alu 1 311 -2 5194 171 12 25 chr15 56290500 56292294 -45088227 + L1PA16 LINE L1 4271 6036 -130 795 152 213 0 chr15 56292294 56292458 -45088063 + AluJb SINE Alu 107 305 -7 1966 142 3 16 chr15 56292460 56292776 -45087745 + AluSx SINE Alu 1 312 0 849 67 75 0 chr15 56292776 56292896 -45087625 + L1PA16 LINE L1 6023 6151 -15 417 229 28 0 chr15 56293335 56293444 -45087077 + MER104 DNA Tc2 29 140 -40 2402 77 0 26 chr15 56293449 56293760 -45086761 + AluY SINE Alu 1 303 -8 2209 106 3 13 chr15 56293941 56294244 -45086277 + AluY SINE Alu 1 300 -11 2233 110 0 7 chr15 56295595 56295904 -45084617 - AluSc SINE Alu -2 307 1 2090 103 3 21 chr15 56296807 56297098 -45083423 + AluSc SINE Alu 1 286 -23 1518 180 64 24 chr15 56297891 56298186 -45082335 - AluJo SINE Alu -5 307 1 348 284 36 62 chr15 56298210 56298435 -45082086 - L2 LINE L2 -635 2679 2461 339 227 146 9 chr15 56299448 56299558 -45080963 - MIR SINE MIR -90 172 48 329 212 253 10 chr15 56299703 56299802 -45080719 - L2 LINE L2 -5 3308 3186 349 241 90 15 chr15 56299817 56299950 -45080571 - MIR SINE MIR -60 202 60 1014 154 130 67 chr15 56301276 56301332 -45079189 + MER58A DNA MER1_type 1 52 -2368 1658 201 0 3 chr15 56301332 56301641 -45078880 - AluJo SINE Alu -4 308 1 1014 154 130 67 chr15 56301641 56301792 -45078729 + MER58A DNA MER1_type 52 221 -3 327 198 19 85 chr15 56302697 56302803 -45077718 - MIR SINE MIR -79 183 85 852 102 0 95 chr15 56303287 56303434 -45077087 - FLAM_C SINE Alu 0 133 1 1760 158 7 14 chr15 56303802 56304099 -45076422 - AluJo SINE Alu -3 309 15 1524 194 48 10 chr15 56304588 56304877 -45075644 + AluJo SINE Alu 5 304 -8 1129 82 13 0 chr15 56304877 56305036 -45075485 + L1MA3 LINE L1 6134 6294 -11 1889 159 7 3 chr15 56306660 56306962 -45073559 + AluSq SINE Alu 1 303 -10 3150 68 22 0 chr15 56307174 56307583 -45072938 - L1PA7 LINE L1 0 6154 5737 2317 104 0 3 chr15 56308120 56308419 -45072102 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr15 56308808 56308830 -45071691 + AT_rich Low_complexity Low_complexity 1 22 0 898 170 0 0 chr15 56309350 56309497 -45071024 - AluSg/x SINE Alu 0 310 164 1163 172 5 15 chr15 56309497 56309695 -45070826 - AluJb SINE Alu -32 280 85 2051 136 27 0 chr15 56311750 56312051 -45068470 + AluSx SINE Alu 2 310 -2 291 93 0 0 chr15 56312575 56312618 -45067903 + (TG)n Simple_repeat Simple_repeat 1 43 0 201 147 0 0 chr15 56313453 56313487 -45067034 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 1215 236 149 8 chr15 56314714 56315042 -45065479 + L1MC4 LINE L1 7240 7521 -521 1629 168 4 7 chr15 56315042 56315316 -45065205 + AluJb SINE Alu 16 288 -24 1215 236 149 8 chr15 56315316 56315332 -45065189 + L1MC4 LINE L1 7521 7533 -509 1896 126 23 40 chr15 56315332 56315633 -45064888 + AluSx SINE Alu 1 296 -16 1215 236 149 8 chr15 56315633 56315757 -45064764 + L1MC4 LINE L1 7533 7775 -267 2408 69 0 41 chr15 56315757 56316076 -45064445 + AluY SINE Alu 1 306 -5 234 351 166 7 chr15 56317766 56318062 -45062459 - L2 LINE L2 -5 3267 2925 2041 157 3 0 chr15 56318842 56319148 -45061373 - AluJb SINE Alu -5 307 1 1918 94 0 0 chr15 56319339 56319583 -45060938 - AluSx SINE Alu -6 306 63 382 257 10 0 chr15 56319583 56319684 -45060837 + MIR SINE MIR 147 248 -14 240 184 0 0 chr15 56321173 56321222 -45059299 + T-rich Low_complexity Low_complexity 1 49 0 1098 90 0 0 chr15 56321222 56321355 -45059166 - AluSq/x SINE Alu -180 133 1 29 0 0 0 chr15 56321379 56321408 -45059113 + AT_rich Low_complexity Low_complexity 1 29 0 324 316 36 22 chr15 56322768 56322907 -45057614 + MIR SINE MIR 111 251 -11 459 287 72 11 chr15 56323375 56323556 -45056965 + Charlie7 DNA MER1_type 2 193 -2419 532 233 40 74 chr15 56323702 56323904 -45056617 + MIR3 SINE MIR 7 201 -7 2088 142 0 3 chr15 56324432 56324735 -45055786 + AluJo SINE Alu 1 302 -10 2940 188 83 5 chr15 56324735 56325325 -45055196 - MER6 DNA MER2_type -228 637 2 289 71 143 0 chr15 56327045 56327087 -45053434 + MADE1 DNA Mariner 31 78 -2 28 102 0 0 chr15 56327152 56327250 -45053271 + AT_rich Low_complexity Low_complexity 1 98 0 1791 114 67 37 chr15 56327260 56327558 -45052963 + AluSx SINE Alu 1 307 -5 437 250 67 0 chr15 56327558 56327662 -45052859 - AluJo/FLAM SINE Alu -196 116 6 1829 148 0 75 chr15 56328134 56328465 -45052056 + AluJo SINE Alu 1 306 -6 585 186 290 0 chr15 56329098 56329281 -45051240 + MIR SINE MIR 2 237 -25 310 241 11 35 chr15 56329315 56329402 -45051119 - L2 LINE L2 -1 3271 3187 218 286 71 0 chr15 56329904 56329988 -45050533 + CT-rich Low_complexity Low_complexity 4 93 0 235 231 46 100 chr15 56430108 56430206 -44950315 + L2 LINE L2 3186 3277 -36 4904 113 32 30 chr15 56430206 56430983 -44949538 - MER4E LTR ERV1 0 779 1 235 231 46 100 chr15 56430983 56431014 -44949507 + L2 LINE L2 3277 3308 -5 586 167 83 8 chr15 56431050 56431157 -44949364 - Tigger7 DNA MER2_type 0 2487 2372 1638 187 60 55 chr15 56431157 56431542 -44948979 + MSTB LTR MaLR 1 387 -39 2124 137 3 10 chr15 56433450 56433764 -44946757 - AluSx SINE Alu 0 312 1 2208 103 6 26 chr15 56434167 56434478 -44946043 - AluSx SINE Alu -7 305 1 2126 95 53 3 chr15 56434610 56434895 -44945626 + AluSx SINE Alu 1 299 -13 810 105 9 9 chr15 56434895 56435009 -44945512 - AluSq/x SINE Alu -199 114 1 253 268 57 81 chr15 56435119 56435242 -44945279 - MIR3 SINE MIR -7 201 82 1828 157 4 0 chr15 56436221 56436501 -44944020 + AluSx SINE Alu 1 281 -31 1992 96 50 7 chr15 56436526 56436808 -44943713 - AluSx SINE Alu -18 294 1 327 259 129 24 chr15 56436809 56436979 -44943542 - L1MC5 LINE L1 -50 7911 7724 2304 107 0 0 chr15 56437059 56437357 -44943164 - AluSg SINE Alu -12 298 1 233 340 26 32 chr15 56437446 56437602 -44942919 + MIR3 SINE MIR 51 205 -3 3950 87 31 0 chr15 56438354 56438904 -44941617 - L1PA10 LINE L1 -17 6151 5585 1833 86 4 8 chr15 56439024 56439281 -44941240 + L1PA14 LINE L1 5599 5854 -307 183 42 0 0 chr15 56440322 56440346 -44940175 + (A)n Simple_repeat Simple_repeat 1 24 0 1890 163 0 10 chr15 56440644 56440950 -44939571 + AluJo SINE Alu 2 304 -8 721 144 0 0 chr15 56441056 56441160 -44939361 + AluSq SINE Alu 151 254 -59 210 306 186 16 chr15 56441187 56441380 -44939141 - L2 LINE L2 -456 2858 2633 372 220 132 55 chr15 56441472 56441532 -44938989 - MIR SINE MIR -38 224 170 2150 110 10 0 chr15 56441532 56441831 -44938690 + AluSq SINE Alu 1 302 -11 372 220 132 55 chr15 56441831 56441962 -44938559 - MIR SINE MIR -92 170 20 495 294 118 50 chr15 56441963 56442461 -44938060 - L2 LINE L2 -746 2568 2023 1703 169 17 7 chr15 56442461 56442579 -44937942 + AluJb SINE Alu 1 116 -196 225 0 0 0 chr15 56442579 56442604 -44937917 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1703 169 17 7 chr15 56442604 56442787 -44937734 + AluJb SINE Alu 116 305 -7 495 294 118 50 chr15 56442787 56442872 -44937649 - L2 LINE L2 -1291 2023 1945 454 102 25 195 chr15 56443008 56443126 -44937395 - FLAM_C SINE Alu -25 118 21 334 0 0 0 chr15 56443155 56443195 -44937326 + L1P3 LINE L1 5646 5685 -469 1519 166 19 19 chr15 56443401 56443672 -44936849 - AluJb SINE Alu -41 271 1 377 226 348 12 chr15 56443814 56443978 -44936543 - MIR SINE MIR 0 262 44 233 250 29 0 chr15 56444501 56444569 -44935952 - L1MC/D LINE L1 -1927 5881 5812 926 164 36 11 chr15 56444901 56445125 -44935396 + AluJb SINE Alu 1 300 -12 373 250 69 31 chr15 56445151 56445311 -44935210 - L1MC/D LINE L1 -2283 5525 5360 1227 173 28 85 chr15 56445311 56445594 -44934927 - AluJo SINE Alu -8 304 38 243 329 34 29 chr15 56445787 56445994 -44934527 - L1MC/D LINE L1 -978 5168 4961 1703 144 9 82 chr15 56446052 56446371 -44934150 + AluJb SINE Alu 5 300 -12 2022 134 7 7 chr15 56446371 56446677 -44933844 + AluSg SINE Alu 1 306 -4 606 207 0 14 chr15 56447600 56447740 -44932781 + AluSc SINE Alu 157 294 -15 34 24 0 0 chr15 56448091 56448132 -44932389 + AT_rich Low_complexity Low_complexity 1 41 0 915 160 0 7 chr15 56448549 56448699 -44931822 - FRAM SINE Alu -12 164 16 597 135 0 31 chr15 56448703 56448799 -44931722 + FRAM SINE Alu 73 165 -11 521 122 0 0 chr15 56448866 56448940 -44931581 + AluJ/FLAM SINE Alu 2 75 -237 574 134 0 0 chr15 56448940 56449022 -44931499 - AluJb SINE Alu -95 217 136 861 208 6 12 chr15 56449136 56449304 -44931217 + FRAM SINE Alu 1 167 -9 747 209 0 0 chr15 56449381 56449510 -44931011 - FLAM_A SINE Alu -2 131 3 2115 114 7 0 chr15 56449546 56449835 -44930686 - AluSq SINE Alu -22 291 1 421 259 123 25 chr15 56449922 56450158 -44930363 - L2 LINE L2 -5 3308 3050 907 185 0 23 chr15 56450158 56450331 -44930190 + FRAM SINE Alu 1 169 -7 222 62 0 0 chr15 56450351 56450383 -44930138 + (CA)n Simple_repeat Simple_repeat 2 33 0 428 262 93 63 chr15 56450387 56450444 -44930077 - L2 LINE L2 -253 3060 3006 1706 172 17 14 chr15 56450444 56450740 -44929781 + AluJo SINE Alu 1 297 -15 428 262 93 63 chr15 56450740 56450919 -44929602 - L2 LINE L2 -307 3006 2817 1925 123 3 48 chr15 56451539 56451849 -44928672 + AluSx SINE Alu 1 296 -16 247 205 51 51 chr15 56451881 56451952 -44928569 + MLT1J LTR MaLR 376 446 -65 2149 174 23 23 chr15 56451952 56452348 -44928173 - MER57A LTR ERV1 0 403 8 2882 180 73 44 chr15 56452501 56453166 -44927355 + LTR8A LTR ERV1 9 727 0 872 205 111 156 chr15 56453271 56453432 -44927089 - LTR8A LTR ERV1 -4 723 556 2019 134 79 18 chr15 56453432 56453775 -44926746 - THE1B LTR MaLR 0 364 1 872 205 111 156 chr15 56453775 56454167 -44926354 - LTR8A LTR ERV1 -171 556 211 4039 109 4 0 chr15 56454167 56454719 -44925802 + MER41A LTR ERV1 1 554 0 872 205 111 156 chr15 56454719 56454921 -44925600 - LTR8A LTR ERV1 -516 211 1 230 75 100 25 chr15 56455253 56455290 -44925231 + LTR29 LTR ERV1 1 40 -582 1837 164 22 11 chr15 56455290 56455650 -44924871 + LTR8A LTR ERV1 1 364 -363 1679 145 11 4 chr15 56455855 56456117 -44924404 + LTR29 LTR ERV1 359 622 0 3459 150 44 68 chr15 56456155 56456861 -44923660 + LTR8 LTR ERV1 2 690 -1 2139 128 0 3 chr15 56457005 56457295 -44923226 + AluSx SINE Alu 1 289 -23 22 0 0 0 chr15 56457336 56457358 -44923163 + AT_rich Low_complexity Low_complexity 1 22 0 977 168 174 90 chr15 56457456 56457653 -44922868 + LTR48 LTR ERV1 1 237 -550 1521 207 3 17 chr15 56457653 56457952 -44922569 + AluJo SINE Alu 1 295 -17 977 168 174 90 chr15 56457952 56458076 -44922445 + LTR48 LTR ERV1 237 349 -438 2536 97 39 3 chr15 56458084 56458557 -44921964 + L1PB1 LINE L1 5151 5641 -510 204 40 0 0 chr15 56458558 56458583 -44921938 + (TG)n Simple_repeat Simple_repeat 2 26 0 2003 154 0 0 chr15 56458606 56458899 -44921622 + AluSx SINE Alu 16 308 -4 2357 102 0 0 chr15 56458899 56459223 -44921298 + L1PB1 LINE L1 5828 6151 0 180 0 0 0 chr15 56459226 56459246 -44921275 + (CAATA)n Simple_repeat Simple_repeat 4 23 0 746 234 27 32 chr15 56459336 56459664 -44920857 + LTR48 LTR ERV1 384 787 0 255 299 26 0 chr15 56460349 56460426 -44920095 - L2 LINE L2 -209 3063 2985 2409 81 10 0 chr15 56460880 56461177 -44919344 - AluSg1 SINE Alu -9 300 1 213 121 0 0 chr15 56461210 56461243 -44919278 + (T)n Simple_repeat Simple_repeat 1 33 0 627 141 0 0 chr15 56461484 56461576 -44918945 - FLAM_C SINE Alu -19 124 33 1321 170 65 29 chr15 56461611 56461887 -44918634 - AluSx SINE Alu -26 286 1 215 280 61 38 chr15 56461890 56462022 -44918499 - L2 LINE L2 -15 3298 3164 435 253 108 32 chr15 56462393 56462551 -44917970 - MARNA DNA Mariner -408 178 9 2299 108 10 3 chr15 56462757 56463062 -44917459 + AluSc SINE Alu 1 307 -2 1889 138 10 16 chr15 56463979 56464283 -44916238 + AluSx SINE Alu 5 306 -6 961 94 123 14 chr15 56465009 56465147 -44915374 + AluSp SINE Alu 1 153 -160 1107 115 0 0 chr15 56465275 56465431 -44915090 + AluSg/x SINE Alu 155 310 -2 1777 137 100 0 chr15 56465645 56465915 -44914606 - AluSx SINE Alu -15 297 1 998 192 16 26 chr15 56465920 56466113 -44914408 - MER20 DNA MER1_type -25 194 4 991 211 26 34 chr15 56466252 56466548 -44913973 - LTR37B LTR ERV1 0 468 146 325 172 76 140 chr15 56466633 56466670 -44913851 - LTR37B LTR ERV1 -316 152 114 1102 180 47 9 chr15 56466670 56466881 -44913640 + MER20 DNA MER1_type 1 219 0 325 172 76 140 chr15 56466881 56466906 -44913615 - LTR37B LTR ERV1 -354 114 89 2260 115 3 0 chr15 56466906 56467211 -44913310 + AluSx SINE Alu 1 306 -6 1864 129 14 4 chr15 56467220 56467498 -44913023 + AluSg SINE Alu 21 301 -9 325 172 76 140 chr15 56467498 56467581 -44912940 - LTR37B LTR ERV1 -387 81 6 1335 127 0 227 chr15 56467679 56468066 -44912455 - AluSx SINE Alu -9 303 5 542 114 136 0 chr15 56468741 56468829 -44911692 + LTR48B LTR ERV1 28 127 -517 492 133 22 44 chr15 56468844 56469024 -44911497 + (TA)n Simple_repeat Simple_repeat 1 176 0 225 0 0 0 chr15 56469044 56469069 -44911452 + (TAGA)n Simple_repeat Simple_repeat 3 27 0 4527 191 96 66 chr15 56469233 56469335 -44911186 + LTR49-int LTR ERV1 3864 3962 -2369 1669 194 0 13 chr15 56469335 56469639 -44910882 - AluJo SINE Alu -12 300 1 4527 191 96 66 chr15 56469639 56470729 -44909792 + LTR49-int LTR ERV1 3962 5109 -1222 1901 163 0 3 chr15 56470729 56471018 -44909503 - AluJo SINE Alu -24 288 1 4527 191 96 66 chr15 56471018 56471284 -44909237 + LTR49-int LTR ERV1 5109 5366 -965 2209 116 0 7 chr15 56471284 56471587 -44908934 - AluSx SINE Alu -9 303 3 280 346 19 0 chr15 56471643 56471750 -44908771 + L1P4 LINE L1 5360 5468 -693 22 35 0 0 chr15 56471947 56471976 -44908545 + AT_rich Low_complexity Low_complexity 1 29 0 2190 102 3 3 chr15 56472482 56472776 -44907745 + AluSx SINE Alu 1 294 -18 715 169 46 39 chr15 56473311 56473441 -44907080 - AluJb SINE Alu -180 132 2 2243 68 20 7 chr15 56474698 56474990 -44905531 - AluY SINE Alu -14 297 2 2131 130 0 0 chr15 56474992 56475284 -44905237 - AluSx SINE Alu -20 292 1 618 160 149 29 chr15 56475691 56475866 -44904655 - MER3 DNA MER1_type 0 209 14 677 173 0 0 chr15 56476311 56476415 -44904106 + FLAM_C SINE Alu 7 110 -33 21 0 0 0 chr15 56476415 56476436 -44904085 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr15 56476778 56476800 -44903721 + AT_rich Low_complexity Low_complexity 1 22 0 2167 111 7 0 chr15 56478001 56478299 -44902222 - AluSx SINE Alu -12 300 1 2030 123 4 0 chr15 56478331 56478607 -44901914 - AluSx SINE Alu -30 282 6 822 140 18 0 chr15 56478633 56478747 -44901774 - FLAM_C SINE Alu -25 118 3 2104 133 3 3 chr15 56478821 56479130 -44901391 - AluSx SINE Alu -3 309 1 2120 125 0 3 chr15 56479132 56479428 -44901093 - AluSx SINE Alu -17 295 1 3815 250 87 35 chr15 56479646 56479919 -44900602 - L2 LINE L2 -508 2806 2549 1657 161 0 8 chr15 56479919 56480179 -44900342 - AluJb SINE Alu -54 258 1 3815 250 87 35 chr15 56480179 56481214 -44899307 - L2 LINE L2 -765 2549 1426 1600 193 11 0 chr15 56481214 56481484 -44899037 - AluJo SINE Alu -39 273 1 1667 202 51 102 chr15 56481495 56482025 -44898496 - L1ME3A LINE L1 -4 6166 5664 9693 114 73 105 chr15 56482027 56482631 -44897890 - Tigger1 DNA MER2_type 0 2418 1796 2048 147 0 0 chr15 56482631 56482931 -44897590 - AluSx SINE Alu -12 300 1 9693 114 73 105 chr15 56482931 56483054 -44897467 - Tigger1 DNA MER2_type -622 1796 1671 2078 138 13 0 chr15 56483054 56483358 -44897163 - AluSx SINE Alu -4 308 1 9693 114 73 105 chr15 56483358 56483557 -44896964 - Tigger1 DNA MER2_type -747 1671 1467 1995 129 14 0 chr15 56483557 56483836 -44896685 - AluSx SINE Alu -29 283 1 2144 134 0 0 chr15 56483845 56484143 -44896378 - AluSx SINE Alu -14 298 1 9693 114 73 105 chr15 56484143 56485203 -44895318 - Tigger1 DNA MER2_type -959 1459 484 1787 167 0 29 chr15 56485203 56485514 -44895007 - AluJb SINE Alu -10 302 1 420 124 0 3 chr15 56485515 56485586 -44894935 - L1ME3A LINE L1 -516 5667 5600 333 0 0 0 chr15 56485586 56485623 -44894898 + (CA)n Simple_repeat Simple_repeat 1 37 0 303 196 0 0 chr15 56485623 56485679 -44894842 - L1MC4 LINE L1 -1339 6703 6648 1735 156 7 17 chr15 56485680 56485969 -44894552 - AluJo SINE Alu -24 288 3 901 173 35 15 chr15 56485970 56486167 -44894354 - L1M3 LINE L1 -567 5616 5416 833 263 199 18 chr15 56486142 56486865 -44893656 - L1MEc LINE L1 -4819 1577 724 * 956 296 82 32 chr15 56487036 56487502 -44893019 - L1MEc LINE L1 -5873 523 35 266 174 49 14 chr15 56488052 56488197 -44892324 + CT-rich Low_complexity Low_complexity 1 150 0 435 340 45 32 chr15 56489903 56490150 -44890371 - MIR SINE MIR -1 261 12 1433 176 124 0 chr15 56490274 56490390 -44890131 + AluJo SINE Alu 1 101 -201 432 51 0 0 chr15 56490390 56490449 -44890072 + (TAAA)n Simple_repeat Simple_repeat 3 61 0 1433 176 124 0 chr15 56490449 56490599 -44889922 + AluJo SINE Alu 101 300 -2 1622 118 100 33 chr15 56490605 56490876 -44889645 + AluJo SINE Alu 1 289 -23 4291 92 9 5 chr15 56491166 56491718 -44888803 - MER41A LTR ERV1 0 554 1 968 233 296 25 chr15 56491882 56492453 -44888068 + LTR50 LTR ERVL 18 743 -52 1856 149 0 17 chr15 56492455 56492756 -44887765 + AluJb SINE Alu 1 296 -16 261 146 0 0 chr15 56493998 56494046 -44886475 + (T)n Simple_repeat Simple_repeat 1 48 0 302 241 194 29 chr15 56494215 56494385 -44886136 + MIR SINE MIR 56 253 -9 2115 131 0 0 chr15 56497030 56497320 -44883201 - AluSg SINE Alu -20 290 1 2215 95 17 0 chr15 56498718 56499013 -44881508 + AluSg SINE Alu 1 300 -10 2448 76 0 0 chr15 56502042 56502343 -44878178 - AluY SINE Alu -10 301 1 2201 106 0 0 chr15 56502646 56502930 -44877591 + AluSg SINE Alu 1 284 -26 1939 155 10 0 chr15 56502992 56503289 -44877232 + AluJb SINE Alu 1 300 -12 29 28 0 0 chr15 56503598 56503634 -44876887 + AT_rich Low_complexity Low_complexity 1 36 0 2211 110 0 0 chr15 56504046 56504338 -44876183 + AluSq SINE Alu 1 292 -21 28 0 0 0 chr15 56504352 56504380 -44876141 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr15 56506141 56506164 -44874357 + AT_rich Low_complexity Low_complexity 1 23 0 969 154 0 0 chr15 56506735 56506891 -44873630 + L1MA5 LINE L1 6144 6299 -1 23 0 0 0 chr15 56506891 56506914 -44873607 + AT_rich Low_complexity Low_complexity 1 23 0 1951 162 0 3 chr15 56507810 56508119 -44872402 + AluJb SINE Alu 3 310 -2 30 0 0 0 chr15 56508399 56508429 -44872092 + AT_rich Low_complexity Low_complexity 1 30 0 2473 58 10 10 chr15 56508452 56508760 -44871761 + AluSp SINE Alu 1 308 -5 505 222 157 27 chr15 56509126 56509311 -44871210 + L1MC5 LINE L1 7705 7913 -48 1397 186 0 0 chr15 56509506 56509742 -44870779 + AluJb SINE Alu 55 290 -22 1419 209 12 0 chr15 56509939 56510198 -44870323 - AluJb SINE Alu -23 289 28 2178 86 21 10 chr15 56510776 56511066 -44869455 - AluSg SINE Alu -16 294 2 1410 177 34 37 chr15 56511077 56511371 -44869150 - AluJo SINE Alu -14 298 6 2149 130 0 9 chr15 56511459 56511774 -44868747 + AluSx SINE Alu 1 312 0 2434 82 0 3 chr15 56512621 56512926 -44867595 + AluSg SINE Alu 1 304 -6 1999 109 14 4 chr15 56512982 56513278 -44867243 + AluSg SINE Alu 1 299 0 1037 188 19 0 chr15 56513292 56513499 -44867022 + L1ME2 LINE L1 5665 5875 -289 264 314 93 86 chr15 56513897 56514177 -44866344 - L2 LINE L2 -25 3247 2966 312 302 311 25 chr15 56514284 56514979 -44865542 - L2 LINE L2 -557 2757 1864 22 0 0 0 chr15 56515035 56515057 -44865464 + AT_rich Low_complexity Low_complexity 1 22 0 2034 119 14 3 chr15 56515181 56515476 -44865045 + AluSx SINE Alu 1 298 -14 2034 147 3 0 chr15 56515489 56515782 -44864739 - AluSx SINE Alu -18 294 1 672 99 40 0 chr15 56515800 56515901 -44864620 - L1PB1 LINE L1 -119 6032 5928 188 65 0 32 chr15 56516409 56516440 -44864081 + (TA)n Simple_repeat Simple_repeat 1 30 0 226 213 16 16 chr15 56516467 56516528 -44863993 + (TA)n Simple_repeat Simple_repeat 1 61 0 1549 190 0 21 chr15 56516529 56516818 -44863703 - AluJb SINE Alu -24 288 6 1977 145 31 0 chr15 56517005 56517294 -44863227 - AluSx SINE Alu -14 298 1 2384 86 20 3 chr15 56517551 56517855 -44862666 + AluSg SINE Alu 1 309 -1 2536 64 0 0 chr15 56518077 56518388 -44862133 + AluY SINE Alu 1 311 0 22 0 0 0 chr15 56519102 56519124 -44861397 + AT_rich Low_complexity Low_complexity 1 22 0 258 247 185 0 chr15 56519131 56519212 -44861309 + L2 LINE L2 3178 3273 -40 210 227 160 13 chr15 56519210 56519285 -44861236 + L2 LINE L2 3180 3265 -7 * 2322 105 3 0 chr15 56520595 56520901 -44859620 - AluSp SINE Alu -6 307 1 1564 177 25 11 chr15 56521117 56521399 -44859122 - AluJo SINE Alu -18 294 9 22 35 0 0 chr15 56521751 56521780 -44858741 + AT_rich Low_complexity Low_complexity 1 29 0 214 369 62 0 chr15 56522145 56522275 -44858246 - L2 LINE L2 -16 3297 3160 196 275 0 0 chr15 56522672 56522712 -44857809 - L2 LINE L2 -7 3265 3226 2810 280 95 17 chr15 56522805 56524079 -44856442 + L2 LINE L2 1923 3308 -5 3503 245 161 29 chr15 56524145 56524216 -44856305 + L2 LINE L2 1396 1456 -1857 1032 141 212 20 chr15 56524216 56524414 -44856107 - MER46A DNA MER2_type 0 236 1 3503 245 161 29 chr15 56524414 56526036 -44854485 + L2 LINE L2 1456 3312 -1 2171 87 23 3 chr15 56527301 56527601 -44852920 + AluSq SINE Alu 1 306 -7 2153 96 17 17 chr15 56527991 56528293 -44852228 + AluSx SINE Alu 1 302 -10 258 246 115 31 chr15 56528434 56528564 -44851957 - Charlie8 DNA MER1_type -2153 264 124 846 146 0 8 chr15 56528565 56528695 -44851826 + FLAM_C SINE Alu 1 129 -14 1487 81 70 4 chr15 56528713 56528971 -44851550 + AluY SINE Alu 1 275 -36 230 241 0 51 chr15 56529284 56529363 -44851158 + L1ME2 LINE L1 6071 6145 -19 21 0 0 0 chr15 56529406 56529427 -44851094 + AT_rich Low_complexity Low_complexity 1 21 0 1338 147 18 85 chr15 56529461 56529733 -44850788 - AluJb SINE Alu -58 254 1 1599 150 87 8 chr15 56533676 56533942 -44846579 - AluJo SINE Alu -25 287 1 906 155 87 19 chr15 56533961 56534122 -44846399 - AluJo SINE Alu -124 188 17 1869 136 20 7 chr15 56534691 56534986 -44845535 - AluSx SINE Alu -13 299 1 201 98 24 24 chr15 56535061 56535102 -44845419 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 2329 91 0 0 chr15 56535292 56535579 -44844942 + AluSg SINE Alu 7 293 -17 2189 83 0 7 chr15 56536774 56537050 -44843471 + AluSx SINE Alu 1 274 -38 262 211 19 0 chr15 56538097 56538149 -44842372 + L2 LINE L2 3190 3242 -30 2163 121 0 3 chr15 56538457 56538770 -44841751 + AluSx SINE Alu 1 312 0 728 202 8 0 chr15 56539508 56539627 -44840894 + FLAM_C SINE Alu 2 121 -22 2213 101 3 10 chr15 56539974 56540281 -44840240 + AluSx SINE Alu 1 305 -7 1808 102 0 74 chr15 56540590 56540875 -44839646 - AluSx SINE Alu -13 299 36 181 125 21 21 chr15 56542599 56542647 -44837874 + (CGG)n Simple_repeat Simple_repeat 3 50 0 1928 119 33 3 chr15 56543051 56543354 -44837167 + AluSx SINE Alu 1 312 0 509 218 309 0 chr15 56543472 56543715 -44836806 - MER5C DNA MER1_type 0 324 7 640 133 168 0 chr15 56543804 56543986 -44836535 + FLAM_C SINE Alu 2 202 0 994 164 12 0 chr15 56543986 56544151 -44836370 + AluSg/x SINE Alu 128 294 -16 330 244 106 8 chr15 56544351 56544474 -44836047 + MIR SINE MIR 128 262 0 180 152 0 0 chr15 56544903 56544936 -44835585 + (TA)n Simple_repeat Simple_repeat 1 33 0 2023 141 3 3 chr15 56545031 56545336 -44835185 + AluSx SINE Alu 1 305 -7 34 0 0 0 chr15 56545387 56545421 -44835100 + AT_rich Low_complexity Low_complexity 1 34 0 1627 169 24 10 chr15 56545521 56545816 -44834705 - AluSx SINE Alu -13 299 1 2075 96 15 0 chr15 56545824 56546095 -44834426 - AluSx SINE Alu -7 305 31 2157 119 7 0 chr15 56546287 56546589 -44833932 + AluSx SINE Alu 1 304 -8 464 125 0 0 chr15 56546758 56546822 -44833699 + AluSp/q SINE Alu 238 301 -12 2322 96 7 0 chr15 56547088 56547389 -44833132 - AluSx SINE Alu -9 303 1 25 31 0 0 chr15 56548205 56548237 -44832284 + AT_rich Low_complexity Low_complexity 1 32 0 230 326 76 0 chr15 56548953 56549045 -44831476 + MIR SINE MIR 36 134 -74 2106 115 0 0 chr15 56549617 56549903 -44830618 - AluSx SINE Alu -26 286 1 22 70 0 0 chr15 56551608 56551651 -44828870 + AT_rich Low_complexity Low_complexity 1 43 0 2098 108 31 7 chr15 56553165 56553453 -44827068 - AluSx SINE Alu -17 295 1 22 0 0 0 chr15 56553602 56553624 -44826897 + AT_rich Low_complexity Low_complexity 1 22 0 2184 125 0 0 chr15 56555063 56555366 -44825155 + AluSx SINE Alu 1 303 -9 27 49 0 0 chr15 56555431 56555472 -44825049 + AT_rich Low_complexity Low_complexity 1 41 0 2327 87 3 7 chr15 56555613 56555922 -44824599 - AluSq SINE Alu -5 308 1 3197 206 61 10 chr15 56555938 56556622 -44823899 - L1ME1 LINE L1 0 6166 5448 197 244 70 43 chr15 56556702 56556817 -44823704 - L2 LINE L2 -97 3216 3099 2438 221 22 19 chr15 56557107 56557646 -44822875 - MLT1E3 LTR MaLR -6 618 47 2109 126 7 3 chr15 56557827 56558129 -44822392 - AluSq SINE Alu -10 303 1 1994 143 19 7 chr15 56558179 56558487 -44822034 - AluSx SINE Alu 0 312 1 480 282 11 109 chr15 56558969 56559257 -44821264 - L2 LINE L2 -564 2750 2397 775 149 18 0 chr15 56559428 56559542 -44820979 + FLAM_A SINE Alu 6 121 -21 26 0 0 0 chr15 56559619 56559645 -44820876 + AT_rich Low_complexity Low_complexity 1 26 0 2104 147 0 0 chr15 56561328 56561634 -44818887 - AluSx SINE Alu -6 306 1 1250 149 77 5 chr15 56561702 56561924 -44818597 - AluJo SINE Alu -27 285 48 807 127 35 12 chr15 56562018 56562191 -44818330 + CT-rich Low_complexity Low_complexity 1 177 0 2225 110 7 3 chr15 56562191 56562492 -44818029 - AluSp SINE Alu -11 302 1 505 147 129 60 chr15 56562764 56562880 -44817641 + L2 LINE L2 3169 3292 -21 2286 89 7 3 chr15 56562987 56563279 -44817242 - AluSp SINE Alu -20 293 1 364 278 63 16 chr15 56563663 56563789 -44816732 + MER5A DNA MER1_type 28 159 -30 2292 111 0 0 chr15 56563823 56564121 -44816400 + AluSx SINE Alu 1 298 -14 180 0 0 0 chr15 56564299 56564319 -44816202 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 2042 117 0 52 chr15 56565030 56565354 -44815167 + AluSg SINE Alu 1 307 -3 249 147 27 120 chr15 56565400 56565475 -44815046 + MLT1L LTR MaLR 5 72 -543 1128 210 40 98 chr15 56565531 56565863 -44814658 + MLT1L LTR MaLR 196 499 -116 2089 112 0 26 chr15 56565863 56566168 -44814353 - AluY SINE Alu -14 297 1 1128 210 40 98 chr15 56566168 56566263 -44814258 + MLT1L LTR MaLR 499 598 -17 1771 141 28 3 chr15 56566450 56566733 -44813788 - AluSx SINE Alu -22 290 1 2138 99 0 0 chr15 56566936 56567258 -44813263 + AluSx SINE Alu 11 332 0 2257 101 0 7 chr15 56567984 56568292 -44812229 + AluY SINE Alu 1 306 -5 1647 123 4 4 chr15 56568566 56568794 -44811727 + AluSx SINE Alu 1 228 -84 227 265 80 84 chr15 56568821 56569059 -44811462 - L1ME4a LINE L1 -11 6110 5874 1699 144 10 41 chr15 56569843 56570135 -44810386 - AluJo SINE Alu -13 299 17 287 304 74 0 chr15 56570656 56570791 -44809730 + MER117 DNA MER1_type 53 197 0 1996 109 7 14 chr15 56571892 56572175 -44808346 - AluSq SINE Alu -14 299 19 683 162 26 0 chr15 56572579 56572692 -44807829 + MSTD LTR MaLR 1 116 -280 1386 159 43 0 chr15 56572692 56572924 -44807597 - MSTB LTR MaLR 0 426 185 453 224 6 146 chr15 56572928 56572945 -44807576 - MIR SINE MIR -59 149 131 1818 112 0 0 chr15 56572945 56573186 -44807335 - AluSq SINE Alu -26 287 47 453 224 6 146 chr15 56573186 56573341 -44807180 - MIR SINE MIR -77 131 2 2190 114 0 0 chr15 56573432 56573721 -44806800 - AluSx SINE Alu -23 289 1 1421 84 0 0 chr15 56575107 56575285 -44805236 + AluSp SINE Alu 1 178 -135 1000 231 77 0 chr15 56575627 56575835 -44804686 + MIR SINE MIR 7 230 -32 374 331 96 0 chr15 56576077 56576243 -44804278 + L2 LINE L2 2872 3053 -219 2378 95 0 13 chr15 56576804 56577121 -44803400 + AluSp SINE Alu 1 313 0 200 98 0 49 chr15 56578985 56579026 -44801495 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 271 283 19 47 chr15 56579038 56579144 -44801377 - MIR SINE MIR -95 167 65 566 264 67 19 chr15 56579863 56580071 -44800450 + L1ME3 LINE L1 5941 6158 -4 546 321 57 12 chr15 56580129 56580375 -44800146 + L2 LINE L2 2997 3253 -60 1244 188 14 31 chr15 56580723 56580946 -44799575 + MER20 DNA MER1_type 1 219 0 1183 49 11 27 chr15 56581062 56581245 -44799276 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2039 123 0 4 chr15 56581252 56581528 -44798993 - AluSx SINE Alu -37 275 1 478 323 41 31 chr15 56582665 56582860 -44797661 + MIR3 SINE MIR 2 198 -10 234 0 0 0 chr15 56583723 56583749 -44796772 + (CA)n Simple_repeat Simple_repeat 2 27 0 677 179 136 0 chr15 56583757 56583897 -44796624 + MER20 DNA MER1_type 1 159 -60 1124 191 18 79 chr15 56583921 56584359 -44796162 + MLT1A1 LTR MaLR 1 396 0 2363 233 157 48 chr15 56584638 56585231 -44795290 - L2 LINE L2 -1153 2161 1434 2624 213 54 6 chr15 56585231 56585772 -44794749 - MLT1F1 LTR MaLR 0 567 1 2363 233 157 48 chr15 56585772 56586084 -44794437 - L2 LINE L2 -1880 1434 1157 2485 87 0 0 chr15 56586100 56586411 -44794110 + AluY SINE Alu 1 311 0 243 0 0 0 chr15 56586482 56586509 -44794012 + (CA)n Simple_repeat Simple_repeat 2 28 0 1759 153 83 0 chr15 56586584 56586872 -44793649 - AluJb SINE Alu 0 312 1 391 333 85 16 chr15 56587076 56587322 -44793199 + L3 LINE CR1 1311 1573 -4 286 146 0 0 chr15 56587338 56587386 -44793135 - L2 LINE L2 -5 3308 3261 1850 154 34 0 chr15 56588407 56588700 -44791821 + AluJb SINE Alu 1 303 -9 682 288 210 23 chr15 56588786 56589258 -44791263 - L1MC4a LINE L1 -1736 6072 5513 3743 88 14 2 chr15 56589299 56589790 -44790731 + L1PA10 LINE L1 5666 6162 -6 738 247 31 0 chr15 56590585 56590747 -44789774 - MIR SINE MIR -48 214 48 944 189 18 0 chr15 56590898 56591090 -44789431 - AluJb SINE Alu 0 307 113 2302 98 3 3 chr15 56591398 56591704 -44788817 + AluSp SINE Alu 1 306 -7 870 338 184 10 chr15 56593325 56594048 -44786473 + L2 LINE L2 1907 2755 -559 1476 215 71 0 chr15 56594086 56594412 -44786109 - MSTC LTR MaLR -12 416 68 1964 156 0 10 chr15 56594412 56594713 -44785808 + AluJo SINE Alu 1 298 -14 926 185 0 0 chr15 56594713 56594884 -44785637 + AluJb SINE Alu 134 304 0 509 152 13 0 chr15 56594884 56594963 -44785558 - MSTC LTR MaLR -348 80 1 456 51 0 0 chr15 56595032 56595091 -44785430 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 1870 96 67 32 chr15 56595103 56595385 -44785136 - AluSx SINE Alu -20 292 1 300 297 84 128 chr15 56595434 56595563 -44784958 + L2 LINE L2 2990 3123 -149 2343 148 31 96 chr15 56595563 56595960 -44784561 - MSTB2 LTR MaLR 0 457 96 2501 77 0 3 chr15 56595960 56596270 -44784251 - AluSg SINE Alu -1 309 1 2343 148 31 96 chr15 56596270 56596360 -44784161 - MSTB2 LTR MaLR -361 96 2 300 297 84 128 chr15 56596360 56596526 -44783995 + L2 LINE L2 3123 3272 0 26 64 0 0 chr15 56597063 56597110 -44783411 + AT_rich Low_complexity Low_complexity 1 47 0 2197 113 3 3 chr15 56597999 56598300 -44782221 + AluSx SINE Alu 3 303 -9 743 281 60 18 chr15 56598522 56598866 -44781655 + MLT1I LTR MaLR 1 390 -19 278 345 58 14 chr15 56598892 56599031 -44781490 - L2 LINE L2 -208 3064 2920 204 40 0 0 chr15 56599059 56599084 -44781437 + (T)n Simple_repeat Simple_repeat 1 25 0 2219 97 38 0 chr15 56599592 56599882 -44780639 + AluSx SINE Alu 1 301 -11 220 321 0 0 chr15 56600235 56600288 -44780233 + MIR SINE MIR 47 99 -163 229 65 0 0 chr15 56600374 56600420 -44780101 + LTR66 LTR ERVL 394 439 -171 399 284 0 75 chr15 56600483 56600617 -44779904 + MIR SINE MIR 31 154 -108 1237 194 0 37 chr15 56600670 56600912 -44779609 + AluJo SINE Alu 5 237 -75 2975 102 16 7 chr15 56600913 56601344 -44779177 + MER41B LTR ERV1 1 435 -200 31 44 0 0 chr15 56601344 56601389 -44779132 + AT_rich Low_complexity Low_complexity 1 45 0 1361 123 9 9 chr15 56601396 56601607 -44778914 + MER41B LTR ERV1 425 635 0 338 211 0 0 chr15 56601607 56601664 -44778857 + AluJo SINE Alu 235 291 -11 40 21 0 0 chr15 56601829 56601876 -44778645 + AT_rich Low_complexity Low_complexity 1 47 0 901 145 12 16 chr15 56602153 56602400 -44778121 + CT-rich Low_complexity Low_complexity 1 246 0 1779 166 20 0 chr15 56602423 56602718 -44777803 - AluJo SINE Alu -11 301 1 306 0 0 0 chr15 56602957 56602991 -44777530 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2045 117 0 14 chr15 56602998 56603288 -44777233 - AluSx SINE Alu -26 286 1 632 179 172 13 chr15 56603304 56603455 -44777066 + MER5A DNA MER1_type 15 189 0 284 273 0 0 chr15 56604133 56604199 -44776322 + L1ME4a LINE L1 5553 5618 -503 2381 232 74 19 chr15 56604266 56605485 -44775036 - L1MC4 LINE L1 -145 7897 6459 585 180 33 0 chr15 56606353 56606475 -44774046 - LTR37A LTR ERV1 0 426 301 258 266 0 16 chr15 56606490 56606554 -44773967 + GA-rich Low_complexity Low_complexity 3 65 0 238 274 14 0 chr15 56606565 56606638 -44773883 + L1ME4a LINE L1 5628 5701 -420 221 279 89 0 chr15 56606863 56606953 -44773568 - MIR SINE MIR -94 114 19 366 203 13 13 chr15 56606974 56607053 -44773468 - LTR67 LTR ERVL -6 551 473 655 243 92 84 chr15 56607054 56607117 -44773404 + L1MC4 LINE L1 7121 7182 -860 2308 101 3 7 chr15 56607117 56607423 -44773098 - AluSp SINE Alu -8 305 1 655 243 92 84 chr15 56607423 56608195 -44772326 + L1MC4 LINE L1 7182 7980 -62 268 281 0 0 chr15 56608536 56608600 -44771921 - LTR67 LTR ERVL -379 178 115 2269 102 3 6 chr15 56608778 56609091 -44771430 + AluSp SINE Alu 2 313 0 22 43 0 21 chr15 56609104 56609130 -44771391 + AT_rich Low_complexity Low_complexity 1 27 -19 1877 130 4 11 chr15 56609130 56609407 -44771114 + AluJb SINE Alu 17 291 -21 22 43 0 21 chr15 56609407 56609427 -44771094 + AT_rich Low_complexity Low_complexity 27 46 0 2174 133 3 0 chr15 56609613 56609922 -44770599 + AluSx SINE Alu 1 310 -2 735 314 64 60 chr15 56610316 56610880 -44769641 + L2 LINE L2 2380 2945 -369 1765 202 106 6 chr15 56610947 56611304 -44769217 - MSTD LTR MaLR -3 393 1 455 286 40 0 chr15 56611397 56611523 -44768998 + L2 LINE L2 3137 3267 -5 2208 123 0 0 chr15 56612536 56612836 -44767685 + AluSx SINE Alu 1 300 -12 258 274 16 0 chr15 56613135 56613197 -44767324 + MIR3 SINE MIR 106 168 -40 367 233 149 52 chr15 56613659 56613853 -44766668 + L1ME4a LINE L1 5766 5998 -123 1604 189 0 43 chr15 56613853 56614176 -44766345 + AluJo SINE Alu 1 309 -3 367 233 149 52 chr15 56614176 56614269 -44766252 + L1ME4a LINE L1 5998 6081 -40 323 246 15 0 chr15 56614396 56614461 -44766060 - MER58 DNA MER1_type 0 2420 2355 1513 164 39 68 chr15 56614474 56614857 -44765664 + THE1C LTR MaLR 1 372 -3 216 304 0 14 chr15 56615343 56615412 -44765109 + (CA)n Simple_repeat Simple_repeat 1 68 0 797 108 16 49 chr15 56617031 56617216 -44763305 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 251 175 18 0 chr15 56617216 56617273 -44763248 + CT-rich Low_complexity Low_complexity 3 60 0 250 388 9 0 chr15 56617345 56617461 -44763060 + MIR SINE MIR 30 146 -62 531 231 37 0 chr15 56617828 56617962 -44762559 + L1ME4a LINE L1 5778 5916 -205 24 32 0 0 chr15 56618111 56618142 -44762379 + AT_rich Low_complexity Low_complexity 1 31 0 346 330 9 17 chr15 56618769 56618884 -44761637 + MIR SINE MIR 23 136 -126 297 299 16 8 chr15 56619121 56619248 -44761273 + AluSp SINE Alu 2 129 -174 575 274 103 55 chr15 56620487 56620779 -44759742 + MER102b DNA MER1_type 14 319 -22 359 358 86 30 chr15 56622031 56622263 -44758258 + MIR SINE MIR 12 256 -6 221 333 78 35 chr15 56623845 56623986 -44756535 - MIR SINE MIR -18 244 98 2199 103 7 10 chr15 56625119 56625419 -44755102 + AluSx SINE Alu 1 299 -13 506 261 56 35 chr15 56625497 56625639 -44754882 + MIR3 SINE MIR 34 178 -30 291 288 9 90 chr15 56625649 56625760 -44754761 + L2 LINE L2 3166 3267 -5 25561 66 3 4 chr15 56626547 56629831 -44750690 + L1PA4 LINE L1 3 3285 -2861 14496 29 7 4 chr15 56629985 56632371 -44748150 + L1PA4 LINE L1 3765 6154 -1 1186 181 84 58 chr15 56632729 56632968 -44747553 - MER33 DNA MER1_type -2267 318 67 1917 118 48 0 chr15 56632968 56633268 -44747253 - AluSx SINE Alu 0 313 1 1186 181 84 58 chr15 56633268 56633337 -44747184 - MER33 DNA MER1_type -2518 67 1 341 285 182 27 chr15 56633403 56633772 -44746749 - L1M4 LINE L1 -1542 4604 4179 673 198 6 38 chr15 56633780 56633937 -44746584 - MLT1F1 LTR MaLR -108 459 308 658 201 0 62 chr15 56634003 56634147 -44746374 - MLT1F1 LTR MaLR -282 285 151 434 207 56 29 chr15 56634132 56634239 -44746282 + MLT1F1 LTR MaLR 21 129 -445 * 308 284 50 30 chr15 56634391 56634592 -44745929 - L1M4 LINE L1 -3789 2357 2153 914 168 0 60 chr15 56634892 56635059 -44745462 - AluJo SINE Alu -30 282 126 857 290 116 52 chr15 56635231 56635470 -44745051 - HAL1b LINE L1 -520 828 606 2176 120 3 0 chr15 56635470 56635762 -44744759 - AluSg SINE Alu -16 294 2 857 290 116 52 chr15 56635762 56635899 -44744622 - HAL1b LINE L1 -742 606 479 2300 73 3 0 chr15 56635899 56636185 -44744336 - AluY SINE Alu -4 307 21 857 290 116 52 chr15 56636185 56636542 -44743979 - HAL1b LINE L1 -869 479 47 327 197 26 40 chr15 56637757 56637833 -44742688 + MIR SINE MIR 80 154 -108 408 109 47 0 chr15 56639788 56639852 -44740669 - AluJ/FLAM SINE Alu -244 68 2 1481 165 92 26 chr15 56640039 56640312 -44740209 - AluJb SINE Alu -21 291 1 243 182 44 133 chr15 56641121 56641302 -44739219 + Charlie7 DNA MER1_type 2448 2612 0 394 294 71 41 chr15 56641486 56641683 -44738838 - MIR SINE MIR 0 262 60 204 125 0 0 chr15 56642284 56642316 -44738205 + (TG)n Simple_repeat Simple_repeat 2 33 0 1982 115 22 26 chr15 56642390 56642702 -44737819 + AluSx SINE Alu 1 311 -1 223 91 23 23 chr15 56642968 56643012 -44737509 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 441 103 0 0 chr15 56643476 56643544 -44736977 + (TC)n Simple_repeat Simple_repeat 2 69 0 207 0 0 0 chr15 56643544 56643567 -44736954 + (CA)n Simple_repeat Simple_repeat 1 23 0 330 324 21 14 chr15 56644077 56644222 -44736299 - L2 LINE L2 -202 3070 2925 248 314 164 29 chr15 56644215 56644422 -44736099 - L2 LINE L2 -527 2787 2553 * 622 258 80 80 chr15 56644972 56645071 -44735450 + MER102b DNA MER1_type 1 99 -1329 2369 100 0 0 chr15 56645071 56645371 -44735150 - AluSx SINE Alu -10 302 3 622 258 80 80 chr15 56645371 56645608 -44734913 + MER102b DNA MER1_type 98 337 -4 204 302 48 15 chr15 56645883 56645965 -44734556 + MIR SINE MIR 67 152 -56 1964 148 16 19 chr15 56647587 56647898 -44732623 + AluJo SINE Alu 1 310 -2 302 264 84 39 chr15 56647909 56648087 -44732434 - L1ME LINE L1 -432 5689 5504 309 302 35 0 chr15 56648282 56648368 -44732153 + MIR SINE MIR 2 90 -172 611 214 60 50 chr15 56648374 56648576 -44731945 - MER20 DNA MER1_type 0 219 16 317 283 33 0 chr15 56648576 56648668 -44731853 + MIR SINE MIR 110 204 -58 229 273 15 0 chr15 56648844 56648910 -44731611 - L1ME4a LINE L1 -78 6043 5977 242 268 36 0 chr15 56648914 56648970 -44731551 + L2 LINE L2 3252 3309 -4 1911 120 0 0 chr15 56649034 56649292 -44731229 - AluSx SINE Alu -46 266 9 21 0 0 0 chr15 56649386 56649407 -44731114 + AT_rich Low_complexity Low_complexity 1 21 0 613 261 7 14 chr15 56649804 56649946 -44730575 + MLT1E LTR MaLR 3 143 -450 1264 223 29 41 chr15 56649972 56650317 -44730204 + MLT2C1 LTR ERVL 57 397 0 1125 219 133 58 chr15 56650319 56650717 -44729804 + MLT1E LTR MaLR 140 593 0 233 182 0 23 chr15 56650898 56650942 -44729579 - MLT1K LTR MaLR -357 231 189 21 0 0 0 chr15 56653001 56653022 -44727499 + AT_rich Low_complexity Low_complexity 1 21 0 234 250 50 0 chr15 56653458 56653518 -44727003 - L2 LINE L2 0 3272 3210 681 212 0 0 chr15 56653615 56653733 -44726788 + FLAM_C SINE Alu 1 118 -15 1936 147 23 13 chr15 56653905 56654212 -44726309 - AluSx SINE Alu 0 312 3 300 289 125 0 chr15 56654271 56654375 -44726146 - MER94 DNA DNA -7 127 11 1349 153 23 14 chr15 56654583 56654799 -44725722 - MER20 DNA MER1_type -1 218 1 30 0 0 0 chr15 56654933 56654963 -44725558 + AT_rich Low_complexity Low_complexity 1 30 0 1431 183 50 37 chr15 56654971 56655271 -44725250 + AluJo SINE Alu 1 304 -8 236 236 112 0 chr15 56655385 56655474 -44725047 - AluS SINE Alu -203 100 2 480 282 11 109 chr15 56655949 56656237 -44724284 - L2 LINE L2 -564 2750 2397 775 149 18 0 chr15 56656408 56656522 -44723999 + FLAM_A SINE Alu 6 121 -21 26 0 0 0 chr15 56656599 56656625 -44723896 + AT_rich Low_complexity Low_complexity 1 26 0 1276 162 0 0 chr15 56658308 56658506 -44722015 - AluSg/x SINE Alu -6 304 107 194 314 0 0 chr15 56659230 56659281 -44721240 - MIR SINE MIR -2 260 210 417 295 101 8 chr15 56659578 56659707 -44720814 - L2 LINE L2 -6 3266 3126 180 365 19 45 chr15 56661687 56661843 -44718678 + L2 LINE L2 2913 3064 -208 195 365 144 10 chr15 56662115 56662219 -44718302 + L2 LINE L2 3150 3267 -5 229 293 95 35 chr15 56662421 56662537 -44717984 - L2 LINE L2 -8 3264 3142 2113 128 0 10 chr15 56662600 56662904 -44717617 + AluSx SINE Alu 12 312 0 746 129 0 0 chr15 56663075 56663176 -44717345 - AluJ/FLAM SINE Alu -210 102 2 222 363 62 9 chr15 56663339 56663452 -44717069 + L2 LINE L2 3154 3272 0 275 287 26 52 chr15 56664669 56664784 -44715737 + L2 LINE L2 3202 3313 0 229 337 69 22 chr15 56665969 56666123 -44714398 - MIR SINE MIR -72 190 32 806 181 23 0 chr15 56666192 56666325 -44714196 + FLAM_C SINE Alu 2 137 -6 1828 174 0 77 chr15 56667393 56667718 -44712803 - MLT1A1 LTR MaLR -2 363 71 2867 97 6 0 chr15 56667718 56668080 -44712441 - THE1B LTR MaLR 0 364 1 1828 174 0 77 chr15 56668080 56668146 -44712375 - MLT1A1 LTR MaLR -294 71 2 3516 122 32 2 chr15 56668927 56669460 -44711061 - L1PB1 LINE L1 -266 5885 5337 * 25723 102 9 10 chr15 56669453 56673141 -44707380 - L1 LINE L1 -2452 3694 11 6294 196 25 13 chr15 56673130 56674474 -44706047 + L1 LINE L1 3701 5059 -1087 * 2223 101 0 14 chr15 56674589 56674886 -44705635 + AluSg SINE Alu 1 293 -17 418 251 251 12 chr15 56674938 56675289 -44705232 + LTR16A1 LTR ERVL 4 450 0 672 281 97 72 chr15 56675592 56676023 -44704498 + MLT1K LTR MaLR 141 582 -6 2225 54 3 44 chr15 56676072 56676402 -44704119 + AluY SINE Alu 1 318 0 183 42 0 0 chr15 56676535 56676559 -44703962 + (A)n Simple_repeat Simple_repeat 1 24 0 1611 232 67 34 chr15 56676913 56677349 -44703172 + MER69 DNA AcHobo 1 450 -2076 2072 114 7 0 chr15 56677359 56677672 -44702849 + AluSx SINE Alu 1 315 0 585 259 142 29 chr15 56677672 56677988 -44702533 + MER69 DNA AcHobo 2067 2418 -108 792 144 8 8 chr15 56677988 56678113 -44702408 + Tigger2 DNA MER2_type 1 125 -2593 2102 110 27 27 chr15 56678120 56678456 -44702065 + Tigger2 DNA MER2_type 2351 2686 -32 253 102 109 219 chr15 56678473 56678601 -44701920 + MER69 DNA AcHobo 2413 2526 0 1740 165 33 0 chr15 56678756 56679028 -44701493 - AluSx SINE Alu -31 281 1 702 278 74 0 chr15 56680699 56680875 -44699646 - MLT1A1 LTR MaLR -3 362 174 7636 49 1 22 chr15 56680886 56681879 -44698642 + L1PA8 LINE L1 5216 6172 0 237 360 48 8 chr15 56681883 56682008 -44698513 - MLT1K LTR MaLR -445 143 14 1314 202 0 0 chr15 56682178 56682436 -44698085 + L1P LINE L1 5069 5326 -820 3056 221 109 12 chr15 56682438 56683339 -44697182 - L1PBa LINE L1 -5870 993 6 1016 189 21 11 chr15 56683401 56683592 -44696929 - MLT1A1 LTR MaLR 0 365 173 214 295 143 9 chr15 56683719 56683824 -44696697 - L2 LINE L2 -17 3296 3178 1900 264 78 50 chr15 56684163 56684966 -44695555 + Zaphod DNA AcHobo 56 881 -3150 1653 218 28 25 chr15 56684934 56685137 -44695384 + Zaphod DNA AcHobo 3595 3796 -235 * 2167 116 0 7 chr15 56685137 56685454 -44695067 + AluSx SINE Alu 1 312 0 1653 218 28 25 chr15 56685454 56685685 -44694836 + Zaphod DNA AcHobo 3796 4030 -1 1588 98 5 0 chr15 56685725 56685940 -44694581 + THE1B-int LTR MaLR 1365 1580 0 2651 103 43 6 chr15 56685940 56686291 -44694230 + THE1B LTR MaLR 1 364 0 1890 144 3 39 chr15 56686342 56686648 -44693873 + AluJb SINE Alu 1 295 -17 307 302 101 18 chr15 56686649 56686818 -44693703 + L1M4 LINE L1 4738 4920 -1226 289 307 183 7 chr15 56686882 56687019 -44693502 - L2 LINE L2 -165 3107 2947 8324 186 53 63 chr15 56687061 56688833 -44691688 - MER52A LTR ERV1 0 1755 1 203 0 37 0 chr15 56689260 56689287 -44691234 + (GA)n Simple_repeat Simple_repeat 2 29 0 240 59 0 0 chr15 56689560 56689594 -44690927 + (CA)n Simple_repeat Simple_repeat 1 34 0 1242 155 35 158 chr15 56691710 56692084 -44688437 - MLT1A1 LTR MaLR -37 328 1 370 272 5 122 chr15 56692263 56692476 -44688045 - MIR SINE MIR 0 262 75 324 259 12 0 chr15 56693562 56693647 -44686874 + MIR SINE MIR 177 262 0 346 333 0 25 chr15 56693655 56693775 -44686746 - MIR SINE MIR -55 153 37 199 350 100 12 chr15 56693787 56693867 -44686654 - L2 LINE L2 0 3272 3186 30 27 0 0 chr15 56694049 56694086 -44686435 + AT_rich Low_complexity Low_complexity 1 37 0 226 204 19 37 chr15 56694310 56694347 -44686174 + CT-rich Low_complexity Low_complexity 2 39 -15 1731 174 55 0 chr15 56694347 56694640 -44685881 - AluJb SINE Alu -1 311 3 226 204 19 37 chr15 56694640 56694656 -44685865 + CT-rich Low_complexity Low_complexity 39 54 0 334 335 132 17 chr15 56696096 56696392 -44684129 - L2 LINE L2 -9 3263 2934 2104 109 10 3 chr15 56696959 56697252 -44683269 - AluSx SINE Alu -15 297 3 640 200 26 74 chr15 56697488 56697678 -44682843 + LTR41 LTR ERVL 1 181 -592 428 163 25 70 chr15 56697975 56698119 -44682402 + LTR50 LTR ERVL 639 795 0 363 78 0 0 chr15 56698190 56698241 -44682280 + (TC)n Simple_repeat Simple_repeat 2 52 0 408 20 0 0 chr15 56698241 56698290 -44682231 + (CA)n Simple_repeat Simple_repeat 1 49 0 299 311 34 20 chr15 56698334 56698482 -44682039 - LTR16C LTR ERVL 0 491 342 24 0 0 0 chr15 56698671 56698695 -44681826 + AT_rich Low_complexity Low_complexity 1 24 0 2051 122 0 3 chr15 56700895 56701189 -44679332 + AluSx SINE Alu 1 293 -19 28 0 0 0 chr15 56701189 56701217 -44679304 + AT_rich Low_complexity Low_complexity 1 28 0 1308 136 99 16 chr15 56701637 56701880 -44678641 + MER21A LTR ERV1 1 263 -668 3248 129 44 30 chr15 56701886 56702428 -44678093 + MER21A LTR ERV1 376 925 -6 352 247 24 24 chr15 56702562 56702647 -44677874 + MIR SINE MIR 15 99 -163 332 259 0 56 chr15 56702696 56702804 -44677717 + MIR SINE MIR 48 149 -113 2093 107 10 10 chr15 56702827 56703118 -44677403 + AluSx SINE Alu 1 291 -21 239 262 54 77 chr15 56704124 56704292 -44676229 - L3 LINE CR1 -1 1576 1413 214 318 16 16 chr15 56704297 56704360 -44676161 + MIR SINE MIR 20 82 -180 790 234 88 0 chr15 56704444 56704649 -44675872 + L1MB7 LINE L1 5953 6175 -9 1389 232 18 6 chr15 56704894 56705222 -44675299 - MER46C DNA MER2_type -1 337 6 2510 71 0 0 chr15 56705797 56706106 -44674415 + AluY SINE Alu 1 309 -2 249 173 0 39 chr15 56706207 56706259 -44674262 + L2 LINE L2 3183 3232 -81 21 0 0 0 chr15 56707995 56708016 -44672505 + AT_rich Low_complexity Low_complexity 1 21 0 2776 159 13 54 chr15 56709601 56710158 -44670363 - L1MA8 LINE L1 -157 6134 5599 25 31 0 0 chr15 56710177 56710209 -44670312 + AT_rich Low_complexity Low_complexity 1 32 0 339 355 5 11 chr15 56710642 56710831 -44669690 + L1ME4a LINE L1 4477 4664 -1482 22 56 0 0 chr15 56711190 56711226 -44669295 + AT_rich Low_complexity Low_complexity 1 36 0 28 29 0 0 chr15 56711502 56711537 -44668984 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr15 56712471 56712492 -44668029 + (A)n Simple_repeat Simple_repeat 1 21 0 323 305 78 7 chr15 56712569 56712710 -44667811 + L1ME4a LINE L1 5754 5904 -217 23 0 0 0 chr15 56712710 56712733 -44667788 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr15 56712776 56712808 -44667713 + AT_rich Low_complexity Low_complexity 1 32 0 490 290 44 41 chr15 56712831 56713172 -44667349 + L1ME4a LINE L1 5563 5904 -217 1083 229 11 105 chr15 56713447 56713685 -44666836 + MLT1A2 LTR MaLR 4 200 -174 2248 93 20 7 chr15 56713685 56713986 -44666535 + AluSc SINE Alu 1 305 -4 1083 229 11 105 chr15 56713986 56714100 -44666421 + MLT1A2 LTR MaLR 200 323 -51 185 297 40 0 chr15 56714113 56714187 -44666334 + L3 LINE CR1 889 965 -612 195 42 0 0 chr15 56715748 56715772 -44664749 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 842 172 41 7 chr15 56715778 56715923 -44664598 - AluJo SINE Alu -44 268 119 216 0 0 0 chr15 56715969 56715993 -44664528 + (CA)n Simple_repeat Simple_repeat 1 24 0 2094 123 10 0 chr15 56716741 56717042 -44663479 + AluSx SINE Alu 5 308 -4 244 269 13 13 chr15 56717453 56717531 -44662990 + MIR SINE MIR 172 249 -13 2201 118 0 0 chr15 56718543 56718840 -44661681 - AluSx SINE Alu -14 298 2 395 241 56 9 chr15 56719134 56719242 -44661279 - MIR SINE MIR -56 206 94 488 266 79 78 chr15 56719429 56719831 -44660690 - L1MC4a LINE L1 -105 6016 5594 2010 133 7 17 chr15 56719831 56720132 -44660389 - AluJb SINE Alu -14 298 1 488 266 79 78 chr15 56720132 56720299 -44660222 - L1MC4a LINE L1 -527 5594 5429 927 278 86 19 chr15 56720686 56721250 -44659271 - L1MC4 LINE L1 -377 7431 7019 51 0 0 0 chr15 56721336 56721387 -44659134 + AT_rich Low_complexity Low_complexity 1 51 0 2152 122 7 0 chr15 56721394 56721689 -44658832 + AluSx SINE Alu 1 297 -15 851 132 0 0 chr15 56721693 56721807 -44658714 - AluJb SINE Alu -198 114 1 731 231 133 8 chr15 56721812 56722068 -44658453 - L1MC4 LINE L1 -964 7078 6791 32 57 0 0 chr15 56722606 56722659 -44657862 + AT_rich Low_complexity Low_complexity 1 53 0 182 143 20 0 chr15 56722802 56722851 -44657670 + (TA)n Simple_repeat Simple_repeat 2 51 0 226 274 0 0 chr15 56722864 56722926 -44657595 - L1MC4a LINE L1 -1355 4791 4730 332 50 0 0 chr15 56723192 56723232 -44657289 + L1MA4A LINE L1 6251 6290 -13 2031 125 30 3 chr15 56723508 56723805 -44656716 - AluSx SINE Alu -7 305 1 248 303 91 20 chr15 56723908 56724084 -44656437 + MIR SINE MIR 2 241 -21 207 0 0 0 chr15 56724894 56724917 -44655604 + (A)n Simple_repeat Simple_repeat 1 23 0 321 120 0 0 chr15 56725358 56725408 -44655113 + L1ME3A LINE L1 6115 6164 -6 755 279 122 30 chr15 56725453 56725814 -44654707 - L2 LINE L2 -359 2955 2562 589 271 33 11 chr15 56725812 56725992 -44654529 - L1M2 LINE L1 -388 5782 5611 * 663 287 87 32 chr15 56726059 56726156 -44654365 + LTR16C LTR ERVL 85 175 -316 1717 178 30 41 chr15 56726156 56726522 -44653999 + MLT1A1 LTR MaLR 4 365 0 663 287 87 32 chr15 56726522 56726734 -44653787 + LTR16C LTR ERVL 175 411 -80 2301 107 3 0 chr15 56727223 56727533 -44652988 + AluY SINE Alu 1 311 0 378 304 88 12 chr15 56727891 56727910 -44652611 - L2 LINE L2 -9 3304 3288 2228 102 0 16 chr15 56727910 56728213 -44652308 + AluSq SINE Alu 1 298 -15 378 304 88 12 chr15 56728213 56728364 -44652157 - L2 LINE L2 -25 3288 3121 336 308 22 65 chr15 56729109 56729294 -44651227 - LTR16A1 LTR ERVL -113 344 168 185 146 21 0 chr15 56729419 56729467 -44651054 + CT-rich Low_complexity Low_complexity 2 50 0 522 207 0 0 chr15 56729480 56729649 -44650872 + CT-rich Low_complexity Low_complexity 1 169 0 263 113 19 0 chr15 56729657 56729710 -44650811 + (CA)n Simple_repeat Simple_repeat 2 55 0 2092 144 0 0 chr15 56731534 56731833 -44648688 - AluSx SINE Alu -13 299 1 273 233 46 93 chr15 56731844 56732007 -44648514 - MIR SINE MIR -56 206 47 2075 121 13 20 chr15 56732127 56732433 -44648088 + AluSx SINE Alu 1 304 -8 732 312 142 77 chr15 56734522 56735051 -44645470 + L1ME3A LINE L1 2 604 -5515 1567 115 29 131 chr15 56735051 56735365 -44645156 + AluJb SINE Alu 3 284 -18 732 312 142 77 chr15 56735365 56735650 -44644871 + L1ME3A LINE L1 604 869 -5250 478 292 78 42 chr15 56735666 56736420 -44644101 + L1ME3A LINE L1 925 1725 -4585 458 183 0 0 chr15 56736498 56736569 -44643952 + FLAM_A SINE Alu 47 117 -25 27 49 0 0 chr15 56736580 56736621 -44643900 + AT_rich Low_complexity Low_complexity 1 41 0 344 262 52 113 chr15 56736700 56736940 -44643581 + L1ME3A LINE L1 1877 2091 -4038 2259 76 3 0 chr15 56736940 56737228 -44643293 + AluY SINE Alu 1 289 -22 344 262 52 113 chr15 56737228 56737331 -44643190 + L1ME3A LINE L1 2091 2199 -3930 335 318 140 25 chr15 56737331 56737567 -44642954 + L1ME3A LINE L1 2413 2675 -3454 2033 250 73 15 chr15 56737567 56738159 -44642362 - MLT1E2 LTR MaLR 0 626 1 1160 265 80 24 chr15 56738219 56738931 -44641590 + L1ME3A LINE L1 2760 3511 -2618 393 301 134 23 chr15 56739011 56739579 -44640942 + L1ME3A LINE L1 3956 4586 -1543 425 283 50 24 chr15 56739591 56739888 -44640633 + L1ME3A LINE L1 4892 5196 -933 617 260 103 62 chr15 56739910 56740050 -44640471 + L1ME3A LINE L1 5411 5544 -609 3942 11 4 2 chr15 56740050 56740502 -44640019 + L1PA3 LINE L1 5698 6150 -5 617 260 103 62 chr15 56740502 56740594 -44639927 + L1ME3A LINE L1 5544 5631 -522 355 284 85 11 chr15 56740594 56740770 -44639751 + MER5A DNA MER1_type 1 189 0 617 260 103 62 chr15 56740770 56741039 -44639482 + L1ME3A LINE L1 5631 5934 -219 24 0 0 0 chr15 56741099 56741123 -44639398 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr15 56741247 56741295 -44639226 + AT_rich Low_complexity Low_complexity 1 48 0 1886 162 3 10 chr15 56741409 56741705 -44638816 + AluJb SINE Alu 5 298 -14 2072 206 34 8 chr15 56742314 56742813 -44637708 + Tigger6 DNA MER2_type 1086 1597 0 572 286 123 22 chr15 56743478 56743754 -44636767 - MLT1K LTR MaLR -40 548 245 2225 93 3 3 chr15 56743760 56744050 -44636471 + AluSq SINE Alu 3 292 -21 1222 105 6 0 chr15 56744050 56744221 -44636300 + AluSg/x SINE Alu 135 306 -6 248 318 151 40 chr15 56744450 56744702 -44635819 - L3 LINE CR1 -4 1573 1294 459 200 0 100 chr15 56744997 56745157 -44635364 + MER69 DNA AcHobo 2383 2526 0 218 380 29 24 chr15 56745236 56745444 -44635077 - L3 LINE CR1 -471 1106 898 2451 85 3 0 chr15 56745780 56746087 -44634434 - AluSp SINE Alu -5 308 1 406 339 44 0 chr15 56746391 56746574 -44633947 + MER117 DNA MER1_type 1 191 -6 319 286 14 79 chr15 56747105 56747245 -44633276 + L2 LINE L2 3142 3272 0 853 143 0 0 chr15 56747402 56747528 -44632993 + FLAM_C SINE Alu 2 127 -6 1656 196 3 20 chr15 56747537 56747838 -44632683 + AluJo SINE Alu 1 296 -16 296 310 26 17 chr15 56747894 56748010 -44632511 + MIR SINE MIR 100 216 -46 471 329 7 0 chr15 56748032 56748175 -44632346 + MIR3 SINE MIR 41 184 -24 321 286 121 62 chr15 56849464 56849688 -44530833 - L1M2a LINE L1 -6369 799 563 310 313 26 31 chr15 56851200 56851395 -44529126 - L1ME LINE L1 -296 5825 5632 253 259 69 61 chr15 56852088 56852219 -44528302 - MIR SINE MIR -57 205 74 663 205 0 0 chr15 56852305 56852422 -44528099 - FLAM_C SINE Alu -16 117 1 356 209 0 15 chr15 56852731 56852798 -44527723 + L2 LINE L2 2678 2743 -571 3004 215 73 44 chr15 56852798 56853669 -44526852 + L1ME1 LINE L1 4606 5450 -884 2355 88 10 0 chr15 56853669 56853966 -44526555 + AluSq SINE Alu 1 300 -13 3004 215 73 44 chr15 56853966 56854602 -44525919 + L1ME1 LINE L1 5450 6333 -1 301 256 137 58 chr15 56854604 56854867 -44525654 + L2 LINE L2 2741 3055 -258 314 241 35 35 chr15 56854882 56854969 -44525552 + MIR3 SINE MIR 115 201 -7 216 0 0 0 chr15 56855135 56855159 -44525362 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2129 108 3 0 chr15 56855162 56855448 -44525073 - AluSp SINE Alu -26 287 1 8214 49 9 1 chr15 56858261 56860075 -44520446 - L1PA5 LINE L1 -3 6151 4329 1910 103 6 29 chr15 56860228 56860539 -44519982 + AluY SINE Alu 1 304 -7 350 286 89 33 chr15 56860540 56860941 -44519580 + L1MEd LINE L1 1378 1839 -4768 333 293 33 88 chr15 56860956 56861137 -44519384 + L1MEd LINE L1 1732 1902 -4524 835 86 86 0 chr15 56861292 56861420 -44519101 + MER85 DNA T2_type 1 139 0 1826 199 25 87 chr15 56861959 56862674 -44517847 + L1MA4 LINE L1 5515 6185 -115 44 0 0 0 chr15 56862709 56862753 -44517768 + AT_rich Low_complexity Low_complexity 1 44 0 494 265 92 114 chr15 56862802 56863214 -44517307 + HAL1 LINE L1 1200 1602 -905 978 242 99 65 chr15 56863233 56863679 -44516842 + MLT1D LTR MaLR 12 472 -33 1993 171 0 0 chr15 56864009 56864314 -44516207 - AluJb SINE Alu -5 307 3 41 0 0 0 chr15 56864870 56864911 -44515610 + AT_rich Low_complexity Low_complexity 1 41 0 205 203 43 43 chr15 56866564 56866633 -44513888 + MIR SINE MIR 100 168 -94 393 209 0 11 chr15 56866637 56866728 -44513793 + MER20 DNA MER1_type 2 91 -128 700 153 24 0 chr15 56866887 56867011 -44513510 + MER20 DNA MER1_type 93 219 0 27 29 0 0 chr15 56867592 56867626 -44512895 + AT_rich Low_complexity Low_complexity 1 34 0 1088 216 100 74 chr15 56867662 56868163 -44512358 + LTR33A LTR ERVL 2 515 -8 268 305 0 0 chr15 56868286 56868345 -44512176 - L2 LINE L2 0 3313 3255 2393 80 0 19 chr15 56870435 56870748 -44509773 - AluY SINE Alu -4 307 1 2085 117 7 0 chr15 56870848 56871139 -44509382 - AluY SINE Alu -18 293 1 4927 248 114 40 chr15 56872069 56874571 -44505950 + L1ME1 LINE L1 148 3038 -3177 1887 169 0 0 chr15 56874571 56874872 -44505649 + AluSx SINE Alu 1 301 -11 4927 248 114 40 chr15 56874872 56876496 -44504025 + L1ME1 LINE L1 3038 4541 -1674 1401 168 7 92 chr15 56876579 56876883 -44503638 + AluJb SINE Alu 1 278 -34 490 165 0 17 chr15 56876883 56876998 -44503523 + GA-rich Low_complexity Low_complexity 4 116 0 1652 218 147 17 chr15 56876998 56877428 -44503093 + L1ME1 LINE L1 4545 5086 -1129 414 0 0 0 chr15 56877428 56877474 -44503047 + (CA)n Simple_repeat Simple_repeat 1 46 0 1652 218 147 17 chr15 56877474 56877682 -44502839 + L1ME1 LINE L1 5086 5266 -949 1820 172 0 7 chr15 56877690 56877987 -44502534 + AluJb SINE Alu 15 309 -3 189 0 0 0 chr15 56877994 56878015 -44502506 + (GA)n Simple_repeat Simple_repeat 2 22 0 1321 209 26 17 chr15 56878015 56878090 -44502431 + L1ME1 LINE L1 5782 5855 -380 2183 133 98 20 chr15 56878090 56878487 -44502034 - MSTA LTR MaLR 0 428 1 1321 209 26 17 chr15 56878487 56878836 -44501685 + L1ME1 LINE L1 5855 6230 -5 185 62 0 31 chr15 56878983 56879015 -44501506 + (CAGC)n Simple_repeat Simple_repeat 4 34 0 691 261 68 11 chr15 56879114 56879290 -44501231 - MIR SINE MIR -43 219 34 1128 189 50 43 chr15 56879293 56879615 -44500906 + MER33 DNA MER1_type 1 324 0 2259 107 3 25 chr15 56879786 56880105 -44500416 + AluSq SINE Alu 1 312 -1 314 308 30 23 chr15 56880120 56880253 -44500268 + MIR SINE MIR 27 160 -102 1194 126 57 34 chr15 56880253 56880516 -44500005 - Charlie1 DNA MER1_type -59 2702 2434 271 253 25 13 chr15 56880856 56880935 -44499586 + GA-rich Low_complexity Low_complexity 3 82 0 1927 143 37 9 chr15 56881206 56881527 -44498994 + MER44D DNA MER2_type 10 609 0 236 216 20 0 chr15 56881604 56881655 -44498866 - MLT1K LTR MaLR -37 551 500 183 204 0 0 chr15 56881679 56881728 -44498793 + CT-rich Low_complexity Low_complexity 1 49 0 285 314 24 65 chr15 56883175 56883344 -44497177 - MIR SINE MIR -66 196 35 319 333 57 14 chr15 56883366 56883507 -44497014 - MER5A DNA MER1_type -3 186 40 943 249 46 0 chr15 56883614 56883831 -44496690 + MIR SINE MIR 12 238 -24 303 271 147 16 chr15 56885336 56885465 -44495056 - MIR SINE MIR -113 149 4 2012 127 0 7 chr15 56885801 56886077 -44494444 - AluSx SINE Alu -37 275 2 2301 83 3 13 chr15 56886485 56886786 -44493735 - AluSx SINE Alu -14 298 1 237 65 0 0 chr15 56887184 56887215 -44493306 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1534 232 128 66 chr15 56887215 56887843 -44492678 + MER21B LTR ERV1 22 794 -137 4299 125 3 22 chr15 56887857 56888504 -44492017 + MER41B LTR ERV1 1 635 0 387 289 103 43 chr15 56888639 56888989 -44491532 - MLT1K LTR MaLR -24 564 194 1565 200 49 15 chr15 56889615 56889871 -44490650 - MER58B DNA MER1_type -2084 336 65 2158 125 0 3 chr15 56889871 56890167 -44490354 + AluSg SINE Alu 1 295 -15 1565 200 49 15 chr15 56890167 56890235 -44490286 - MER58B DNA MER1_type -2355 65 1 383 300 171 0 chr15 56890721 56890861 -44489660 + MLT1K LTR MaLR 116 279 -309 338 156 0 47 chr15 56890842 56890906 -44489615 + MLT1K LTR MaLR 524 584 -4 * 3484 140 39 19 chr15 56891584 56892175 -44488346 + LTR26 LTR ERV1 1 603 0 199 333 36 80 chr15 56892412 56892550 -44487971 + L2 LINE L2 3133 3264 -8 21 0 0 0 chr15 56892643 56892664 -44487857 + AT_rich Low_complexity Low_complexity 1 21 0 909 176 18 18 chr15 56892670 56892835 -44487686 - AluJo SINE Alu -25 287 123 2306 100 3 0 chr15 56892838 56893137 -44487384 + AluSq SINE Alu 1 300 -13 2439 79 0 0 chr15 56893843 56894133 -44486388 + AluSg SINE Alu 1 290 -20 574 237 0 20 chr15 56894577 56894729 -44485792 + MIR SINE MIR 72 220 -42 2202 102 3 0 chr15 56894999 56895284 -44485237 - AluSg SINE Alu -24 286 1 252 270 0 14 chr15 56895934 56896008 -44484513 + MIR3 SINE MIR 136 208 0 268 291 93 17 chr15 56896182 56896354 -44484167 + L1ME LINE L1 5683 5867 -254 24 0 0 0 chr15 56898234 56898258 -44482263 + AT_rich Low_complexity Low_complexity 1 24 0 195 129 0 0 chr15 56899999 56900030 -44480491 + (T)n Simple_repeat Simple_repeat 1 31 0 183 80 0 0 chr15 56902724 56902749 -44477772 + (GGA)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr15 56903358 56903379 -44477142 + AT_rich Low_complexity Low_complexity 1 21 0 243 229 0 0 chr15 56903880 56903941 -44476580 + (CAT)n Simple_repeat Simple_repeat 2 62 0 219 36 0 0 chr15 56904269 56904297 -44476224 + (CA)n Simple_repeat Simple_repeat 1 28 0 242 295 0 54 chr15 56906393 56906522 -44473999 + CT-rich Low_complexity Low_complexity 3 124 0 201 108 0 0 chr15 56907401 56907438 -44473083 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 330 153 0 0 chr15 56909418 56909477 -44471044 + CT-rich Low_complexity Low_complexity 2 60 0 240 324 19 19 chr15 56909921 56910029 -44470492 + CT-rich Low_complexity Low_complexity 2 109 0 263 262 82 16 chr15 56912761 56912883 -44467638 - MIR SINE MIR -56 206 77 544 290 182 34 chr15 56912937 56913382 -44467139 - L3 LINE CR1 -154 1423 913 218 193 18 0 chr15 56913398 56913455 -44467066 + CT-rich Low_complexity Low_complexity 2 59 0 1557 146 77 56 chr15 56913455 56913742 -44466779 - AluSx SINE Alu -15 297 5 474 281 67 29 chr15 56914568 56914778 -44465743 + MIR SINE MIR 18 235 -27 2069 145 7 0 chr15 56914878 56915182 -44465339 + AluSx SINE Alu 1 306 -6 386 180 22 11 chr15 56915234 56915323 -44465198 - MIR SINE MIR -95 167 78 277 349 75 27 chr15 56916633 56916779 -44463742 + MIR SINE MIR 37 189 -73 846 130 0 43 chr15 56916870 56917008 -44463513 - FLAM_C SINE Alu 0 133 2 236 269 117 21 chr15 56917103 56917248 -44463273 + MIR3 SINE MIR 41 199 -9 358 261 30 45 chr15 56917416 56917550 -44462971 - MIR SINE MIR -70 192 61 420 246 84 14 chr15 56917614 56917756 -44462765 + L2 LINE L2 2564 2715 -599 495 143 0 0 chr15 56917757 56917827 -44462694 + AluS SINE Alu 2 71 -242 1187 155 77 10 chr15 56917847 56918054 -44462467 - MSTB LTR MaLR -205 221 1 867 127 0 0 chr15 56918344 56918462 -44462059 + AluSq/x SINE Alu 1 118 -194 182 36 0 36 chr15 56918465 56918493 -44462028 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 427 263 0 0 chr15 56918651 56918757 -44461764 + MER5A DNA MER1_type 4 109 -80 2389 55 17 0 chr15 56918945 56919234 -44461287 + AluY SINE Alu 2 295 -16 302 328 68 34 chr15 56919299 56919476 -44461045 + MER5A DNA MER1_type 7 189 0 619 297 117 8 chr15 56919551 56919807 -44460714 + MLT1K LTR MaLR 31 314 -274 1244 186 0 18 chr15 56920001 56920222 -44460299 + AluSg/x SINE Alu 85 301 -9 234 0 0 0 chr15 56920299 56920325 -44460196 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1824 156 0 0 chr15 56920328 56920598 -44459923 - AluJo SINE Alu -30 282 13 243 227 0 0 chr15 56920610 56920654 -44459867 + MER103 DNA DNA 74 117 -49 251 313 122 8 chr15 56920758 56920889 -44459632 - MIR SINE MIR -50 212 67 325 288 43 29 chr15 56921581 56921720 -44458801 + MIR SINE MIR 51 191 -71 211 155 0 35 chr15 56921792 56921850 -44458671 + (CTA)n Simple_repeat Simple_repeat 1 56 0 1221 118 20 5 chr15 56924170 56924365 -44456156 + L1MD3 LINE L1 7790 7987 -8 368 229 57 9 chr15 56924510 56924615 -44455906 + MIR SINE MIR 42 151 -57 1331 103 16 0 chr15 56924662 56924856 -44455665 - L1P LINE L1 -1316 4830 4634 2724 71 24 5 chr15 56924856 56925233 -44455288 + L1PA8 LINE L1 5788 6172 0 319 291 97 23 chr15 56925351 56925526 -44454995 - MIR3 SINE MIR -5 203 16 1724 93 0 0 chr15 56925778 56925994 -44454527 + AluY SINE Alu 83 298 -13 2209 121 0 6 chr15 56927273 56927617 -44452904 - AluSq SINE Alu 0 342 1 426 173 0 0 chr15 56929885 56929960 -44450561 + MER5A DNA MER1_type 4 78 -111 239 299 0 0 chr15 56929960 56930027 -44450494 + (CA)n Simple_repeat Simple_repeat 1 67 0 265 274 0 0 chr15 56930090 56930152 -44450369 + MER5A DNA MER1_type 128 189 0 1069 216 113 0 chr15 56931688 56931980 -44448541 - MER58B DNA MER1_type -15 326 2 1599 181 20 7 chr15 56932031 56932323 -44448198 + AluSx SINE Alu 2 297 -15 180 97 0 0 chr15 56935113 56935144 -44445377 + (CA)n Simple_repeat Simple_repeat 1 31 0 1815 163 0 10 chr15 56935524 56935831 -44444690 + AluJb SINE Alu 1 304 -8 288 299 68 26 chr15 56935831 56936058 -44444463 + L1ME LINE L1 5595 5834 -287 240 245 20 10 chr15 56936064 56936162 -44444359 + (TA)n Simple_repeat Simple_repeat 1 99 0 2212 117 0 3 chr15 56937752 56938052 -44442469 + AluSx SINE Alu 1 299 -13 21 36 0 0 chr15 56938153 56938181 -44442340 + AT_rich Low_complexity Low_complexity 1 28 0 1050 273 48 35 chr15 56939508 56939962 -44440559 + MLT1K LTR MaLR 117 576 -12 200 318 111 0 chr15 56940152 56940215 -44440306 + L2 LINE L2 3151 3220 -52 419 274 211 5 chr15 56940356 56940546 -44439975 - LTR16C LTR ERVL 0 491 263 323 300 11 11 chr15 56941036 56941126 -44439395 + L2 LINE L2 3200 3289 -24 473 284 64 5 chr15 56941354 56941558 -44438963 + L1MC4a LINE L1 5695 5910 -1898 192 179 0 0 chr15 56941753 56941792 -44438729 + (TGGA)n Simple_repeat Simple_repeat 2 40 0 1809 168 3 3 chr15 56941956 56942260 -44438261 + AluJo SINE Alu 1 304 -8 342 315 9 18 chr15 56942346 56942457 -44438064 - MIR SINE MIR -124 138 29 750 180 12 24 chr15 56944575 56944742 -44435779 + MER103 DNA DNA 2 166 0 2796 198 37 65 chr15 56945274 56947202 -44433319 + L1ME1 LINE L1 4252 6161 -5 265 120 40 180 chr15 56947883 56947983 -44432538 + L1MB7 LINE L1 6099 6184 0 494 309 40 17 chr15 56948104 56948487 -44432034 + L1 LINE L1 3536 3925 -2221 248 204 0 0 chr15 56948538 56948587 -44431934 + MSTB1 LTR MaLR 5 53 -379 1452 186 19 38 chr15 56948588 56948906 -44431615 + AluJo SINE Alu 1 312 0 277 93 37 19 chr15 56948907 56948961 -44431560 + GA-rich Low_complexity Low_complexity 2 56 0 1915 153 50 24 chr15 56948963 56949341 -44431180 + MSTB1 LTR MaLR 45 432 0 267 325 43 37 chr15 56949596 56949759 -44430762 + MIR3 SINE MIR 36 199 -9 198 0 0 0 chr15 56949877 56949899 -44430622 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 2029 120 67 0 chr15 56949988 56950271 -44430250 + AluSq SINE Alu 1 302 -11 1631 181 48 17 chr15 56950456 56950810 -44429711 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr15 56951920 56951941 -44428580 + AT_rich Low_complexity Low_complexity 1 21 0 224 296 14 0 chr15 56952005 56952076 -44428445 - MIR SINE MIR 0 262 191 1738 242 10 37 chr15 56952078 56952570 -44427951 - MLT2B1 LTR ERVL -41 479 1 417 285 125 23 chr15 56952805 56953236 -44427285 + L1MC/D LINE L1 5337 5811 -1997 980 229 18 9 chr15 56953449 56953667 -44426854 + MER69 DNA AcHobo 3 222 -2304 479 241 31 75 chr15 56953777 56954005 -44426516 + MER46C DNA MER2_type 2 219 -119 37 23 0 0 chr15 56954225 56954269 -44426252 + AT_rich Low_complexity Low_complexity 1 44 0 240 337 17 17 chr15 56954688 56954869 -44425652 + L1M4 LINE L1 5406 5586 -588 180 125 0 0 chr15 56955150 56955182 -44425339 + (TAA)n Simple_repeat Simple_repeat 2 33 0 343 233 62 16 chr15 56955357 56955486 -44425035 + L1 LINE L1 3995 4129 -2017 697 249 42 5 chr15 56955491 56955680 -44424841 + MLT1F LTR MaLR 345 540 -2 1394 230 46 9 chr15 56955700 56956134 -44424387 + L1 LINE L1 4261 4710 -1436 1729 125 28 41 chr15 56956148 56956467 -44424054 + MER44D DNA MER2_type 1 585 -24 589 296 26 0 chr15 56956504 56956734 -44423787 + L1 LINE L1 4711 4946 -1200 397 184 10 19 chr15 56956778 56956881 -44423640 + L1ME1 LINE L1 5231 5332 -814 3525 270 96 15 chr15 56956883 56958972 -44421549 + L1M3d LINE L1 6 1925 -4045 2211 126 0 0 chr15 56958976 56959269 -44421252 + AluSx SINE Alu 4 296 -16 1067 192 8 23 chr15 56959321 56959581 -44420940 + L1 LINE L1 5127 5382 -764 509 133 7 126 chr15 56959581 56959724 -44420797 + L1MB1 LINE L1 5307 5432 -736 * 1104 213 0 4 chr15 56959714 56959977 -44420544 + L1ME2 LINE L1 5657 5918 -246 1982 161 0 0 chr15 56959993 56960284 -44420237 + AluSx SINE Alu 3 293 -19 3166 175 29 3 chr15 56960315 56960931 -44419590 + L1MB1 LINE L1 5496 6127 -41 1370 201 46 28 chr15 56960931 56961214 -44419307 + AluJb SINE Alu 1 288 -24 259 55 96 27 chr15 56961220 56961293 -44419228 + (TTTAA)n Simple_repeat Simple_repeat 5 82 0 2300 205 16 44 chr15 56961344 56961461 -44419060 + L1ME1 LINE L1 5318 5437 -729 1805 190 3 0 chr15 56961461 56961771 -44418750 + AluJo SINE Alu 1 311 -1 2300 205 16 44 chr15 56961771 56962268 -44418253 + L1ME1 LINE L1 5437 5915 -251 24 32 0 0 chr15 56962275 56962306 -44418215 + AT_rich Low_complexity Low_complexity 1 31 0 403 299 10 44 chr15 56962306 56962510 -44418011 + L1ME1 LINE L1 5915 6111 -55 435 168 0 74 chr15 56962513 56962608 -44417913 + THE1B LTR MaLR 194 281 -83 2326 106 0 13 chr15 56962851 56963163 -44417358 + AluY SINE Alu 1 308 -3 677 202 0 8 chr15 56964735 56964854 -44415667 + FLAM_A SINE Alu 4 121 -12 2001 125 0 0 chr15 56965297 56965584 -44414937 + AluSc SINE Alu 14 300 -9 1529 185 62 0 chr15 56965606 56965898 -44414623 + AluJb SINE Alu 1 310 -2 246 200 93 0 chr15 56966636 56966711 -44413810 + L1MB7 LINE L1 6103 6184 0 279 239 26 35 chr15 56966740 56966853 -44413668 + L1MEd LINE L1 965 1076 -5043 1409 95 0 43 chr15 56966860 56967092 -44413429 + AluY SINE Alu 1 222 -89 1150 193 3 77 chr15 56967709 56968020 -44412501 + MLT1B LTR MaLR 98 385 -5 1808 157 102 105 chr15 56968435 56968517 -44412004 - MLT2B1 LTR ERVL 0 520 439 195 42 0 0 chr15 56968517 56968541 -44411980 + (TG)n Simple_repeat Simple_repeat 1 24 0 204 40 0 0 chr15 56968544 56968569 -44411952 + (GA)n Simple_repeat Simple_repeat 2 26 0 1808 157 102 105 chr15 56968569 56969004 -44411517 - MLT2B1 LTR ERVL -83 437 1 2270 122 0 3 chr15 56969056 56969360 -44411161 + AluSx SINE Alu 1 303 -9 2599 118 62 5 chr15 56969721 56970126 -44410395 + MSTA LTR MaLR 1 428 0 1729 285 49 31 chr15 56970266 56970915 -44409606 - MLT2F LTR ERVL -2 661 1 24 0 0 0 chr15 56971644 56971668 -44408853 + AT_rich Low_complexity Low_complexity 1 24 0 3772 150 25 4 chr15 56971701 56972393 -44408128 + Tigger3b DNA MER2_type 2 707 -524 419 141 8 164 chr15 56972397 56972525 -44407996 - FLAM_A SINE Alu -6 136 29 1514 95 23 53 chr15 56972527 56972714 -44407807 + Tigger3b DNA MER2_type 708 886 -2142 1836 118 44 4 chr15 56972714 56972984 -44407537 - AluSc SINE Alu -28 281 1 1514 95 23 53 chr15 56972984 56973057 -44407464 + Tigger3b DNA MER2_type 886 960 -271 1691 108 119 0 chr15 56973057 56973335 -44407186 - MER1B DNA MER1_type 0 339 29 1098 117 22 22 chr15 56973343 56973523 -44406998 + Tigger3b DNA MER2_type 1062 1241 0 355 271 25 0 chr15 56973725 56973843 -44406678 - L1MC4a LINE L1 -1922 5886 5766 396 0 0 0 chr15 56974028 56974072 -44406449 + (CA)n Simple_repeat Simple_repeat 2 45 0 333 0 0 0 chr15 56974942 56974979 -44405542 + (TG)n Simple_repeat Simple_repeat 2 38 0 782 246 0 6 chr15 56975122 56975305 -44405216 - MIR SINE MIR -1 261 80 1792 80 4 29 chr15 56976496 56976770 -44403751 - L1MA1 LINE L1 0 6302 6036 371 266 0 44 chr15 56976907 56977020 -44403501 + L2 LINE L2 2981 3088 -184 21 0 0 0 chr15 56977836 56977857 -44402664 + AT_rich Low_complexity Low_complexity 1 21 0 207 245 0 0 chr15 56979198 56979247 -44401274 - L2 LINE L2 -17 3296 3248 2496 69 0 0 chr15 56979284 56979590 -44400931 + AluY SINE Alu 1 306 -5 546 280 0 8 chr15 56980265 56980390 -44400131 - MIR SINE MIR -114 148 25 472 265 85 47 chr15 56980334 56980550 -44399971 + MIR SINE MIR 7 230 -32 * 228 363 82 0 chr15 56980909 56981044 -44399477 - MIR SINE MIR -71 191 46 272 325 58 25 chr15 56981122 56981242 -44399279 + MIR3 SINE MIR 33 156 -52 221 0 35 0 chr15 56981290 56981319 -44399202 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2010 124 62 0 chr15 56981622 56981913 -44398608 - AluSq SINE Alu -4 309 1 288 193 273 11 chr15 56982274 56982362 -44398159 + L2 LINE L2 3193 3303 -10 470 294 111 0 chr15 56982528 56982681 -44397840 + MIR SINE MIR 23 192 -70 11707 166 50 44 chr15 56982760 56985364 -44395157 + Charlie5 DNA MER1_type 2 2621 0 2517 224 88 78 chr15 56985582 56986888 -44393633 - HAL1 LINE L1 0 2507 1062 983 207 65 121 chr15 56986891 56987278 -44393243 + MLT1A1 LTR MaLR 1 365 0 2430 66 0 10 chr15 56987586 56987889 -44392632 + AluY SINE Alu 1 300 -11 1143 289 128 24 chr15 56989942 56990395 -44390126 - HAL1 LINE L1 -1826 681 182 352 218 128 15 chr15 56990396 56990529 -44389992 - LTR16C LTR ERVL 0 491 344 262 222 14 132 chr15 56990746 56990890 -44389631 - L1M4 LINE L1 -1563 4583 4457 660 250 59 51 chr15 56990915 56991276 -44389245 - L1MCc LINE L1 -4887 1536 1280 909 156 0 22 chr15 56991276 56991411 -44389110 + FLAM_C SINE Alu 2 133 0 660 250 59 51 chr15 56991411 56991514 -44389007 - L1MCc LINE L1 -5143 1280 1179 293 242 32 11 chr15 56991912 56991994 -44388527 - HAL1 LINE L1 -2323 184 98 1493 156 0 0 chr15 56991994 56992225 -44388296 - AluSg/x SINE Alu 0 312 82 293 242 32 11 chr15 56992225 56992237 -44388284 - HAL1 LINE L1 -2409 98 88 192 111 0 0 chr15 56992731 56992767 -44387754 + (A)n Simple_repeat Simple_repeat 1 36 0 281 331 73 8 chr15 56993985 56994109 -44386412 - L2 LINE L2 -2 3270 3139 731 299 15 0 chr15 56994200 56994397 -44386124 + MER63A DNA MER1_type 9 208 -2 2278 95 0 0 chr15 56994449 56994758 -44385763 + AluSx SINE Alu 1 309 0 735 262 114 73 chr15 56994963 56995306 -44385215 + MLT1H LTR MaLR 1 357 -192 341 183 12 37 chr15 56995315 56995397 -44385124 + MLT1H LTR MaLR 476 555 0 2830 153 25 5 chr15 56995687 56995724 -44384797 - MLT2B2 LTR ERVL -6 548 513 601 82 18 18 chr15 56995724 56995834 -44384687 + (TAGA)n Simple_repeat Simple_repeat 3 112 0 2830 153 25 5 chr15 56995834 56996272 -44384249 - MLT2B2 LTR ERVL -41 513 7 1878 221 62 61 chr15 56997116 56997863 -44382658 + LTR8A LTR ERV1 1 727 0 2479 174 75 22 chr15 56998514 56999024 -44381497 - MLT1F LTR MaLR -5 537 1 439 260 96 14 chr15 56999030 56999249 -44381272 - L1ME4a LINE L1 -191 5930 5694 2479 174 75 22 chr15 56999858 57000368 -44380153 - MLT1F LTR MaLR -5 537 1 442 265 96 14 chr15 57000374 57000593 -44379928 - L1ME4a LINE L1 -191 5930 5694 760 172 191 6 chr15 57002424 57002581 -44377940 - MER20 DNA MER1_type -28 191 6 2394 84 0 7 chr15 57002648 57002956 -44377565 - AluY SINE Alu -5 306 1 377 154 0 13 chr15 57005070 57005148 -44375373 + (TAGA)n Simple_repeat Simple_repeat 3 79 0 2142 206 49 24 chr15 57005148 57005614 -44374907 - MLT2B1 LTR ERVL -42 478 1 867 167 8 0 chr15 57006479 57006611 -44373910 + FLAM_C SINE Alu 1 133 0 2395 86 0 3 chr15 57007484 57007785 -44372736 + AluY SINE Alu 1 300 -11 247 241 121 12 chr15 57007839 57007922 -44372599 - MIR SINE MIR -71 191 100 2327 101 0 0 chr15 57008159 57008465 -44372056 + AluSx SINE Alu 1 306 -6 222 174 0 0 chr15 57009213 57009259 -44371262 + (TATATG)n Simple_repeat Simple_repeat 6 51 0 1772 178 0 28 chr15 57009263 57009583 -44370938 - AluJb SINE Alu 0 312 2 493 280 30 0 chr15 57009752 57009884 -44370637 - MIR3 SINE MIR -3 205 70 324 289 13 0 chr15 57010085 57010161 -44370360 + L2 LINE L2 3188 3264 -8 192 246 158 44 chr15 57010233 57010347 -44370174 - MIR3 SINE MIR -1 207 81 2100 154 44 26 chr15 57011137 57011520 -44369001 - MLT1B LTR MaLR 0 390 1 22 0 0 0 chr15 57012572 57012594 -44367927 + AT_rich Low_complexity Low_complexity 1 22 0 2402 78 0 3 chr15 57016243 57016551 -44363970 - AluY SINE Alu -4 307 1 460 244 77 89 chr15 57017413 57017454 -44363067 - MER5B DNA MER1_type -4 174 134 2650 33 0 0 chr15 57017454 57017755 -44362766 + AluY SINE Alu 1 301 -10 460 244 77 89 chr15 57017755 57017881 -44362640 - MER5B DNA MER1_type -44 134 9 181 277 21 0 chr15 57018216 57018263 -44362258 - L2 LINE L2 -219 3053 3006 282 271 0 0 chr15 57018422 57018481 -44362040 - MIR SINE MIR 0 262 204 1902 120 33 11 chr15 57018493 57018794 -44361727 - AluSq SINE Alu 0 307 1 611 231 26 19 chr15 57018794 57018950 -44361571 - MIR SINE MIR -36 226 70 21 0 0 0 chr15 57020247 57020268 -44360253 + AT_rich Low_complexity Low_complexity 1 21 0 2217 98 3 7 chr15 57021952 57022249 -44358272 - AluSq SINE Alu -17 296 1 448 254 88 46 chr15 57023169 57023371 -44357150 - MIR SINE MIR -9 253 31 198 0 0 0 chr15 57023725 57023747 -44356774 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 276 30 0 0 chr15 57023746 57023779 -44356742 + (CA)n Simple_repeat Simple_repeat 1 33 0 1809 184 0 29 chr15 57023943 57024259 -44356262 + AluJb SINE Alu 1 307 -5 222 118 0 0 chr15 57024809 57024843 -44355678 + (CA)n Simple_repeat Simple_repeat 1 34 0 180 0 0 0 chr15 57024842 57024862 -44355659 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 228 372 68 34 chr15 57025283 57025469 -44355052 - MIR3 SINE MIR -62 146 1 2536 11 0 0 chr15 57026776 57027049 -44353472 + AluYa5 SINE Alu 36 308 -3 498 240 155 112 chr15 57027560 57028097 -44352424 - MER34 LTR ERV1 0 585 26 367 343 37 0 chr15 57028473 57028581 -44351940 - L2 LINE L2 -14 3258 3147 219 257 59 30 chr15 57028858 57028959 -44351562 - MIR SINE MIR -146 116 13 183 338 27 40 chr15 57029896 57029970 -44350551 - L3b LINE CR1 -13 1570 1498 276 271 0 0 chr15 57030090 57030149 -44350372 - L2 LINE L2 -3 3269 3211 467 211 67 10 chr15 57030335 57030439 -44350082 + L2 LINE L2 3200 3309 -4 481 248 25 0 chr15 57030666 57030787 -44349734 + L1ME4a LINE L1 5989 6112 -9 33 0 0 0 chr15 57031236 57031269 -44349252 + AT_rich Low_complexity Low_complexity 1 33 0 359 268 36 82 chr15 57032024 57032218 -44348303 + MER5A DNA MER1_type 5 189 0 334 273 41 41 chr15 57032260 57032381 -44348140 + MIR SINE MIR 28 148 -114 1904 151 7 10 chr15 57032704 57033002 -44347519 - AluJb SINE Alu -15 297 1 275 0 0 28 chr15 57033013 57033049 -44347472 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 263 276 71 67 chr15 57033201 57033455 -44347066 - L2 LINE L2 -818 2496 2242 790 220 29 0 chr15 57033473 57033646 -44346875 - MER5B DNA MER1_type 0 178 1 1634 244 58 50 chr15 57033804 57034304 -44346217 - MLT1D LTR MaLR -1 504 1 3609 200 120 115 chr15 57034310 57035364 -44345157 - MLT1D-int LTR MaLR -16 1355 291 1636 181 54 4 chr15 57035364 57035641 -44344880 - AluJb SINE Alu -19 293 3 3609 200 120 115 chr15 57035641 57035931 -44344590 - MLT1D-int LTR MaLR -1080 291 4 32 0 0 0 chr15 57035990 57036022 -44344499 + AT_rich Low_complexity Low_complexity 1 32 0 185 309 0 0 chr15 57036160 57036215 -44344306 - MIR SINE MIR -85 123 69 207 343 67 38 chr15 57036391 57036496 -44344025 - L2 LINE L2 0 3313 3206 440 248 26 0 chr15 57036670 57036783 -44343738 - MIR SINE MIR -113 149 34 288 294 78 14 chr15 57036782 57036957 -44343564 - MIR SINE MIR -61 147 3 * 2295 84 0 10 chr15 57037314 57037624 -44342897 + AluY SINE Alu 1 307 -4 703 277 13 55 chr15 57037643 57037878 -44342643 + MIR SINE MIR 28 252 -10 1625 168 0 62 chr15 57037904 57038042 -44342479 + AluJb SINE Alu 13 125 -187 2199 104 0 3 chr15 57038042 57038339 -44342182 + AluSp SINE Alu 5 300 -13 1625 168 0 62 chr15 57038339 57038491 -44342030 + AluJb SINE Alu 125 285 -27 976 254 25 8 chr15 57038581 57038817 -44341704 - MIR SINE MIR 0 262 23 195 69 0 0 chr15 57039955 57039984 -44340537 + (A)n Simple_repeat Simple_repeat 1 29 0 1627 179 11 0 chr15 57040056 57040359 -44340162 - AluJo SINE Alu 0 306 1 329 225 188 0 chr15 57040388 57040468 -44340053 + MER81 DNA DNA 1 95 -19 180 254 104 0 chr15 57042480 57042547 -44337974 - MIR SINE MIR -72 190 117 268 328 84 61 chr15 57042589 57042934 -44337587 + L2 LINE L2 2400 2752 -562 1484 157 108 11 chr15 57042940 57043208 -44337313 + AluJb SINE Alu 12 305 -7 425 253 10 0 chr15 57043361 57043460 -44337061 - L2 LINE L2 -13 3300 3201 216 331 92 8 chr15 57043700 57043830 -44336691 + L2 LINE L2 3162 3302 -11 356 272 106 28 chr15 57043848 57044028 -44336493 - MIR SINE MIR -36 226 33 2190 123 83 14 chr15 57044226 57044577 -44335944 - THE1C LTR MaLR 0 375 1 267 292 0 0 chr15 57045639 57045710 -44334811 + (TGGA)n Simple_repeat Simple_repeat 1 71 0 2278 110 0 7 chr15 57046119 57046428 -44334093 + AluSc SINE Alu 1 307 -2 22 0 0 0 chr15 57046638 57046660 -44333861 + AT_rich Low_complexity Low_complexity 1 22 0 2580 58 0 0 chr15 57046662 57046970 -44333551 + AluY SINE Alu 2 309 -2 798 297 73 3 chr15 57047139 57047442 -44333079 + L2 LINE L2 2215 2538 -776 1805 158 0 3 chr15 57047447 57047760 -44332761 + AluJb SINE Alu 1 312 0 848 141 23 0 chr15 57047762 57047890 -44332631 + AluSq/x SINE Alu 6 136 -177 1084 220 40 99 chr15 57047890 57048444 -44332077 + L2 LINE L2 2674 3312 -1 233 218 0 18 chr15 57048444 57048499 -44332022 + GA-rich Low_complexity Low_complexity 1 54 0 186 43 0 0 chr15 57048662 57048685 -44331836 + (CA)n Simple_repeat Simple_repeat 2 24 0 696 232 115 44 chr15 57049175 57049337 -44331184 + L1ME3A LINE L1 3069 3218 -2928 2431 93 3 0 chr15 57049337 57049649 -44330872 + AluSq SINE Alu 1 313 0 696 232 115 44 chr15 57049649 57049733 -44330788 + L1ME3A LINE L1 3218 3295 -2851 2119 122 17 0 chr15 57049733 57050028 -44330493 + AluSx SINE Alu 1 300 -12 696 232 115 44 chr15 57050028 57050189 -44330332 + L1ME3A LINE L1 3295 3506 -2640 911 93 16 0 chr15 57050193 57050322 -44330199 + AluSg/x SINE Alu 172 302 -8 1516 287 83 29 chr15 57050325 57051342 -44329179 + L1ME3A LINE L1 3504 4464 -1698 398 0 65 0 chr15 57051342 57051404 -44329117 + (TA)n Simple_repeat Simple_repeat 2 67 0 1516 287 83 29 chr15 57051404 57052245 -44328276 + L1ME3A LINE L1 4464 5742 -420 444 258 36 113 chr15 57052277 57052552 -44327969 - MLT1J2 LTR MaLR -57 393 140 246 206 63 0 chr15 57052535 57052598 -44327923 - MLT1J1 LTR MaLR -341 105 39 * 652 199 59 89 chr15 57052648 57052884 -44327637 + L1ME3A LINE L1 5740 5968 -202 1356 190 0 4 chr15 57057099 57057352 -44323169 - L1MB3 LINE L1 0 6183 5932 534 302 36 26 chr15 57057671 57057863 -44322658 - MIR SINE MIR -41 221 28 198 298 0 0 chr15 57058192 57058239 -44322282 - MIR SINE MIR 0 262 216 500 76 0 13 chr15 57058547 57058626 -44321895 + (CA)n Simple_repeat Simple_repeat 1 78 0 689 289 52 20 chr15 57058798 57059047 -44321474 + MIR SINE MIR 6 262 0 336 242 34 34 chr15 57059085 57059234 -44321287 + L1MC5 LINE L1 7294 7442 -519 450 219 59 9 chr15 57059963 57060099 -44320422 + L1MC4 LINE L1 6862 7060 -802 330 270 69 42 chr15 57060104 57060293 -44320228 + L1MC5 LINE L1 6960 7153 -808 325 189 44 67 chr15 57060293 57060383 -44320138 + LTR48B LTR ERV1 1 88 -556 * 2114 205 18 20 chr15 57060370 57060819 -44319702 + MER39 LTR ERV1 260 707 0 275 239 56 0 chr15 57060819 57060922 -44319599 + L1MC5 LINE L1 7146 7213 -748 1982 138 18 0 chr15 57060925 57061046 -44319475 + AluJo SINE Alu 1 118 -197 183 42 0 0 chr15 57061046 57061070 -44319451 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1982 138 18 0 chr15 57061070 57061258 -44319263 + AluJo SINE Alu 118 315 0 324 254 55 109 chr15 57061452 57061498 -44319023 + L1MC5 LINE L1 7262 7309 -652 2197 136 0 0 chr15 57061498 57061799 -44318722 + AluSx SINE Alu 1 301 -11 324 254 55 109 chr15 57061799 57061972 -44318549 + L1MC5 LINE L1 7309 7469 -492 210 307 53 26 chr15 57062190 57062304 -44318217 - MIR SINE MIR -74 134 18 281 219 14 25 chr15 57062344 57062423 -44318098 + L1MC4 LINE L1 7505 7672 -370 1872 130 0 4 chr15 57063228 57063497 -44317024 + AluSx SINE Alu 25 292 -20 1558 138 53 11 chr15 57063497 57063779 -44316742 + L1MA4A LINE L1 6010 6303 0 981 147 0 0 chr15 57064332 57064502 -44316019 + (TCTA)n Simple_repeat Simple_repeat 3 172 0 263 238 0 48 chr15 57064638 57064701 -44315820 - L2 LINE L2 -6 3307 3248 399 21 0 0 chr15 57065215 57065263 -44315258 + (TG)n Simple_repeat Simple_repeat 1 48 0 286 275 108 8 chr15 57065519 57065639 -44314882 - MIR3 SINE MIR -40 168 37 317 256 142 3 chr15 57065985 57066172 -44314349 + MIR SINE MIR 2 261 -1 2194 115 0 3 chr15 57067412 57067699 -44312822 - AluSg SINE Alu -24 286 1 404 286 103 90 chr15 57068498 57068602 -44311919 + L2 LINE L2 3008 3109 -204 1863 152 22 0 chr15 57068602 57068900 -44311621 - AluSx SINE Alu 0 304 1 404 286 103 90 chr15 57068900 57069095 -44311426 + L2 LINE L2 3109 3312 -1 256 264 23 0 chr15 57069736 57069823 -44310698 - MER113 DNA MER1_type? -430 91 3 235 309 114 36 chr15 57069884 57070104 -44310417 - L2 LINE L2 0 3313 3077 513 204 34 7 chr15 57070105 57070407 -44310114 + GA-rich Low_complexity Low_complexity 1 310 0 2080 133 3 0 chr15 57070857 57071143 -44309378 - AluSx SINE Alu -25 287 1 363 281 65 70 chr15 57071728 57071810 -44308711 - MIR SINE MIR -73 189 108 2145 127 13 0 chr15 57071810 57072117 -44308404 + AluSp SINE Alu 2 312 -1 363 281 65 70 chr15 57072117 57072219 -44308302 - MIR SINE MIR -154 108 6 349 279 14 50 chr15 57072673 57072813 -44307708 + MIR SINE MIR 58 192 -70 357 235 71 58 chr15 57072911 57073090 -44307431 - MIR SINE MIR -53 209 30 279 306 14 21 chr15 57073142 57073277 -44307244 - L2 LINE L2 -410 2904 2769 2013 131 32 0 chr15 57073277 57073560 -44306961 + AluSg SINE Alu 1 292 -18 362 286 37 19 chr15 57074112 57074273 -44306248 + MIR SINE MIR 88 251 -11 25 0 0 0 chr15 57074453 57074478 -44306043 + AT_rich Low_complexity Low_complexity 1 25 0 198 71 0 0 chr15 57075407 57075435 -44305086 + (TTTTTA)n Simple_repeat Simple_repeat 4 31 0 195 277 0 0 chr15 57075959 57076006 -44304515 - L2 LINE L2 -4 3309 3263 410 230 50 10 chr15 57076017 57076117 -44304404 + MER5A DNA MER1_type 15 118 -71 448 230 95 92 chr15 57076880 57076969 -44303552 - L1ME4a LINE L1 -7 6114 6027 1668 176 10 36 chr15 57076969 57077270 -44303251 + AluJo SINE Alu 1 293 -19 448 230 95 92 chr15 57077270 57077580 -44302941 - L1ME4a LINE L1 -94 6027 5714 231 167 0 0 chr15 57078469 57078511 -44302010 + CT-rich Low_complexity Low_complexity 1 42 0 326 310 57 0 chr15 57078569 57078727 -44301794 - L1MC5 LINE L1 -519 7442 7276 529 228 133 25 chr15 57078822 57079118 -44301403 - L1MC4 LINE L1 -741 7220 6957 886 276 106 35 chr15 57079134 57079996 -44300525 - L1MC4 LINE L1 -891 6917 6076 1352 224 95 19 chr15 57080053 57080517 -44300004 - L1MEc LINE L1 -1866 4349 3851 2834 275 48 15 chr15 57081067 57082316 -44298205 - L1MEc LINE L1 -2345 3870 2581 588 256 102 50 chr15 57082407 57083176 -44297345 - L1MEc LINE L1 -3980 2416 1602 2063 138 3 0 chr15 57083223 57083520 -44297001 - AluSx SINE Alu -14 298 1 2042 128 20 0 chr15 57083596 57083893 -44296628 - AluSx SINE Alu -9 303 1 961 125 0 7 chr15 57083893 57084029 -44296492 - AluSq/x SINE Alu -177 135 1 391 304 145 7 chr15 57085511 57085649 -44294872 - L2 LINE L2 -1 3271 3115 183 42 0 0 chr15 57086971 57086995 -44293526 + (TGGGGG)n Simple_repeat Simple_repeat 6 29 0 1849 183 0 3 chr15 57087670 57087976 -44292545 - AluSx SINE Alu -7 305 1 2029 138 14 7 chr15 57088830 57089126 -44291395 - AluJb SINE Alu -13 299 2 797 238 41 6 chr15 57089681 57089853 -44290668 + MER5A DNA MER1_type 6 183 -6 577 284 30 24 chr15 57089882 57090077 -44290444 + MIR SINE MIR 5 194 -62 248 312 0 46 chr15 57090167 57090276 -44290245 + MIR SINE MIR 89 192 -70 2256 107 3 3 chr15 57090590 57090899 -44289622 + AluSc SINE Alu 1 309 0 489 325 24 0 chr15 57090991 57091160 -44289361 - MIR SINE MIR -17 245 73 613 184 26 0 chr15 57094211 57094325 -44286196 + L1PA10 LINE L1 6038 6154 -14 474 312 85 15 chr15 57094353 57094552 -44285969 + MIR SINE MIR 8 220 -42 2323 90 3 13 chr15 57095348 57095660 -44284861 + AluSc SINE Alu 1 309 0 316 200 144 11 chr15 57095863 57095953 -44284568 - L2 LINE L2 -96 3217 3116 271 180 0 0 chr15 57095956 57096006 -44284515 + MIR SINE MIR 73 122 -140 990 121 0 12 chr15 57096150 57096316 -44284205 - MER53 DNA DNA 0 189 26 2040 141 0 49 chr15 57096469 57096795 -44283726 + AluSx SINE Alu 1 310 -2 892 287 87 37 chr15 57097073 57097474 -44283047 - L2 LINE L2 0 3313 2893 1140 169 22 40 chr15 57098500 57098725 -44281796 - AluJb SINE Alu -10 302 82 418 303 45 17 chr15 57100372 57100550 -44279971 + MER5A DNA MER1_type 6 188 -1 536 179 66 20 chr15 57101489 57101640 -44278881 - ORSL DNA AcHobo -110 165 8 4177 97 16 3 chr15 57101640 57102248 -44278273 + L1MA3 LINE L1 5683 6298 -7 360 303 94 30 chr15 57102422 57102656 -44277865 - MIR SINE MIR -1 261 13 674 185 101 117 chr15 57102676 57102984 -44277537 - MER5C DNA MER1_type -6 318 16 2443 70 0 0 chr15 57103960 57104258 -44276263 + AluY SINE Alu 1 298 -13 436 285 97 6 chr15 57104764 57104929 -44275592 - MIR SINE MIR -40 222 43 2110 132 20 7 chr15 57105483 57105787 -44274734 + AluSq SINE Alu 6 313 0 1615 196 73 3 chr15 57106970 57107311 -44273210 - MLT1A1 LTR MaLR 0 365 1 32 57 0 0 chr15 57107697 57107750 -44272771 + AT_rich Low_complexity Low_complexity 1 53 0 1674 176 14 10 chr15 57107796 57108091 -44272430 - AluJb SINE Alu -16 296 1 7089 53 8 0 chr15 57110899 57111812 -44268709 + L1PA5 LINE L1 5227 6146 -8 24 0 0 0 chr15 57111812 57111836 -44268685 + AT_rich Low_complexity Low_complexity 1 24 0 572 248 200 5 chr15 57112157 57112367 -44268154 - MIR SINE MIR 0 262 12 951 283 89 63 chr15 57113267 57113960 -44266561 + L1ME2 LINE L1 123 797 -5322 1758 182 0 10 chr15 57113960 57114262 -44266259 + AluJb SINE Alu 1 299 -13 951 283 89 63 chr15 57114262 57114401 -44266120 + L1ME2 LINE L1 797 931 -5188 1642 185 57 66 chr15 57114401 57114872 -44265649 - MLT1C LTR MaLR 0 467 1 951 283 89 63 chr15 57114872 57115126 -44265395 + L1ME2 LINE L1 931 1238 -4881 2504 87 3 0 chr15 57115252 57115564 -44264957 - AluSq SINE Alu 0 313 1 441 263 56 26 chr15 57115582 57115814 -44264707 + L1ME3A LINE L1 5927 6165 -5 368 335 138 23 chr15 57115826 57116044 -44264477 + HAL1 LINE L1 1523 1765 -742 1180 162 8 174 chr15 57116469 57116820 -44263701 - AluJo SINE Alu -9 293 1 316 275 53 58 chr15 57116836 57117178 -44263343 + L1ME2 LINE L1 2196 2535 -3594 620 161 0 32 chr15 57118316 57118440 -44262081 + L1MD3 LINE L1 7876 7995 0 1062 224 54 4 chr15 57119078 57119337 -44261184 + L1ME2 LINE L1 5407 5678 -469 516 204 66 11 chr15 57119334 57119515 -44261006 - L1M4 LINE L1 -972 5174 4984 * 1226 222 45 48 chr15 57119517 57119899 -44260622 + L1ME2 LINE L1 5660 6016 -133 2181 113 0 0 chr15 57119899 57120192 -44260329 - AluSx SINE Alu -19 293 1 1226 222 45 48 chr15 57120192 57120326 -44260195 + L1ME2 LINE L1 6016 6149 0 23 33 0 0 chr15 57120816 57120846 -44259675 + AT_rich Low_complexity Low_complexity 1 30 0 240 111 0 0 chr15 57121760 57121796 -44258725 + (TA)n Simple_repeat Simple_repeat 2 37 0 200 350 161 15 chr15 57121884 57122021 -44258500 + L2 LINE L2 2826 2982 -290 626 226 87 33 chr15 57122032 57122305 -44258216 - LTR16C LTR ERVL -2 489 150 414 337 82 28 chr15 57122400 57122655 -44257866 + L2 LINE L2 2985 3253 -19 * 1044 278 70 78 chr15 57122653 57122945 -44257576 - L2 LINE L2 0 3313 3020 2050 140 22 0 chr15 57122945 57123301 -44257220 + L1MC1 LINE L1 5962 6325 -8 746 195 0 0 chr15 57123302 57123425 -44257096 + FLAM_C SINE Alu 2 124 -9 1044 278 70 78 chr15 57123425 57123644 -44256877 - L2 LINE L2 -292 3021 2804 275 336 86 7 chr15 57123932 57124072 -44256449 + MIR3 SINE MIR 50 200 -8 3464 136 9 15 chr15 57124547 57125077 -44255444 + MER1A DNA MER1_type 1 527 0 184 293 69 0 chr15 57125083 57125141 -44255380 - L2 LINE L2 -64 3208 3147 2508 59 9 3 chr15 57126192 57126515 -44254006 + L1PA5 LINE L1 5826 6150 -4 1140 194 5 37 chr15 57128079 57128134 -44252387 + AluJo SINE Alu 86 141 -171 1131 15 15 0 chr15 57128134 57128271 -44252250 + L1PA4 LINE L1 6016 6154 -1 1140 194 5 37 chr15 57128271 57128431 -44252090 + AluJo SINE Alu 141 294 -18 1914 161 0 3 chr15 57131120 57131419 -44249102 - AluJb SINE Alu -14 298 1 547 318 98 11 chr15 57131835 57132206 -44248315 + L2 LINE L2 2647 3059 -213 408 130 0 0 chr15 57133083 57133152 -44247369 + (GGA)n Simple_repeat Simple_repeat 3 71 0 405 289 113 14 chr15 57133740 57133882 -44246639 - L2 LINE L2 0 3272 3117 1061 69 25 19 chr15 57134068 57134228 -44246293 - L1PA13 LINE L1 -3 6160 6000 522 341 134 3 chr15 57134278 57134583 -44245938 - L2 LINE L2 -339 2975 2631 1562 176 0 8 chr15 57134688 57134943 -44245578 - AluSx SINE Alu -55 257 5 23 33 0 0 chr15 57135144 57135174 -44245347 + AT_rich Low_complexity Low_complexity 1 30 0 347 254 9 9 chr15 57135222 57135336 -44245185 - L1ME4a LINE L1 -70 6051 5938 180 0 0 0 chr15 57135886 57135906 -44244615 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 210 244 0 0 chr15 57136328 57136373 -44244148 + CT-rich Low_complexity Low_complexity 3 47 0 317 268 65 41 chr15 57136565 57136688 -44243833 - L2 LINE L2 0 3313 3188 279 0 0 0 chr15 57136912 57136943 -44243578 + (CA)n Simple_repeat Simple_repeat 2 32 0 243 0 0 0 chr15 57136942 57136969 -44243552 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 476 264 84 62 chr15 57136980 57137266 -44243255 + L1ME3A LINE L1 949 1375 -5041 970 271 48 74 chr15 57137339 57138504 -44242017 + L1ME3A LINE L1 4790 5924 -520 732 239 193 0 chr15 57138529 57138726 -44241795 - MIR SINE MIR -24 238 4 382 295 28 13 chr15 57138731 57138993 -44241528 + L1ME3A LINE L1 5926 6192 -258 2456 226 94 72 chr15 57139054 57139776 -44240745 + MER69B DNA AcHobo 59 811 -1715 703 233 0 0 chr15 57139776 57139909 -44240612 + FLAM_A SINE Alu 1 133 0 2456 226 94 72 chr15 57139909 57140212 -44240309 + MER69B DNA AcHobo 811 1106 -120 367 254 26 18 chr15 57140716 57140830 -44239691 - MIR SINE MIR 0 262 148 240 143 0 0 chr15 57142610 57142652 -44237869 + (CA)n Simple_repeat Simple_repeat 2 43 0 284 267 58 50 chr15 57143433 57143553 -44236968 - MIR SINE MIR -71 137 17 198 263 105 0 chr15 57143755 57143837 -44236684 + MIR SINE MIR 101 192 -70 611 315 35 42 chr15 57144007 57144267 -44236254 - MIR SINE MIR -1 261 4 305 322 141 20 chr15 57146666 57146865 -44233656 + L3 LINE CR1 1268 1490 -87 1931 128 20 7 chr15 57147076 57147372 -44233149 + AluSx SINE Alu 1 300 -12 190 380 42 0 chr15 57147375 57147446 -44233075 + L3 LINE CR1 1489 1562 -15 1852 167 86 23 chr15 57147601 57148317 -44232204 - L1MA10 LINE L1 -440 5728 4963 2809 139 34 52 chr15 57148317 57148876 -44231645 + L1MA10 LINE L1 5725 6280 -54 2027 132 10 3 chr15 57148876 57149164 -44231357 - AluSx SINE Alu -22 290 1 2809 139 34 52 chr15 57149164 57149216 -44231305 + L1MA10 LINE L1 6280 6331 -3 21 0 0 0 chr15 57149362 57149383 -44231138 + AT_rich Low_complexity Low_complexity 1 21 0 659 280 70 37 chr15 57149801 57150044 -44230477 - MIR SINE MIR -3 259 9 3645 65 27 0 chr15 57150577 57151066 -44229455 + L1PA8 LINE L1 5670 6171 -1 360 285 65 18 chr15 57151096 57151265 -44229256 - MIR3 SINE MIR -71 137 10 515 331 23 42 chr15 57151279 57151531 -44228990 + MIR SINE MIR 11 262 0 243 329 136 13 chr15 57151538 57151693 -44228828 - L2 LINE L2 0 3272 3099 2983 106 110 12 chr15 57151757 57152239 -44228282 - MER1A DNA MER1_type 0 529 1 524 302 17 17 chr15 57152397 57152569 -44227952 + MIR SINE MIR 41 212 -50 260 246 29 14 chr15 57152596 57152665 -44227856 + GA-rich Low_complexity Low_complexity 6 75 0 182 263 70 0 chr15 57153769 57153826 -44226695 - MIR SINE MIR -73 135 75 268 314 64 21 chr15 57153859 57153999 -44226522 + MER117 DNA MER1_type 1 146 -51 29 60 0 0 chr15 57154492 57154542 -44225979 + AT_rich Low_complexity Low_complexity 1 50 0 872 264 48 4 chr15 57154886 57155113 -44225408 + MIR SINE MIR 3 239 -23 224 282 0 0 chr15 57156317 57156395 -44224126 + T-rich Low_complexity Low_complexity 1 78 0 303 28 0 0 chr15 57157429 57157465 -44223056 + (CA)n Simple_repeat Simple_repeat 1 36 0 304 216 0 0 chr15 57157964 57158015 -44222506 - MIR SINE MIR -157 105 55 21 0 0 0 chr15 57158042 57158063 -44222458 + AT_rich Low_complexity Low_complexity 1 21 0 498 286 108 22 chr15 57158304 57158489 -44222032 + MIR SINE MIR 47 247 -15 2105 138 0 10 chr15 57159475 57159779 -44220742 + AluSx SINE Alu 1 301 -11 405 39 0 0 chr15 57160646 57160697 -44219824 + (CA)n Simple_repeat Simple_repeat 2 52 0 288 173 0 80 chr15 57161377 57161452 -44219069 - MIR SINE MIR 0 262 194 825 262 110 0 chr15 57161472 57161704 -44218817 - MIR SINE MIR 0 262 6 318 370 90 35 chr15 57161953 57162264 -44218257 - L2 LINE L2 -419 2895 2568 362 319 29 22 chr15 57163112 57163250 -44217271 - MIR3 SINE MIR -66 142 4 218 304 152 0 chr15 57163350 57163429 -44217092 + MIR SINE MIR 40 130 -78 537 316 24 0 chr15 57163624 57163792 -44216729 + MIR SINE MIR 39 210 -52 237 167 0 0 chr15 57163799 57163841 -44216680 - L2 LINE L2 -4 3309 3268 247 326 34 88 chr15 57164328 57164475 -44216046 + L2 LINE L2 3123 3261 -11 200 326 116 20 chr15 57165728 57165875 -44214646 - MIR SINE MIR -70 192 32 201 74 0 0 chr15 57167054 57167081 -44213440 + (A)n Simple_repeat Simple_repeat 1 27 0 332 317 39 19 chr15 57167145 57167404 -44213117 - MER34 LTR ERV1 -278 264 1 930 255 66 29 chr15 57168578 57168927 -44211594 + MER21B LTR ERV1 378 739 -124 248 356 30 8 chr15 57169337 57169469 -44211052 - MIR SINE MIR -56 152 18 504 267 85 23 chr15 57169732 57169908 -44210613 + MIR SINE MIR 58 244 -18 406 268 79 49 chr15 57170234 57170398 -44210123 - MIR SINE MIR 0 262 94 586 208 101 82 chr15 57170643 57170801 -44209720 + MER58C DNA MER1_type 5 158 -2262 2079 99 0 38 chr15 57170801 57171094 -44209427 + AluSx SINE Alu 1 282 -30 288 0 0 0 chr15 57171100 57171132 -44209389 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 586 208 101 82 chr15 57171132 57171173 -44209348 + MER58C DNA MER1_type 162 215 0 2256 129 7 0 chr15 57171319 57171628 -44208893 + AluSx SINE Alu 1 311 -1 296 280 51 77 chr15 57172311 57172466 -44208055 + MIR SINE MIR 32 175 -59 3908 188 31 4 chr15 57173932 57174694 -44205827 + LTR39 LTR ERV1 1 783 0 18870 121 21 23 chr15 57174897 57178178 -44202343 + L1P LINE L1 11 3285 -2861 674 205 51 6 chr15 57178295 57178451 -44202070 - MER96B DNA MER1_type? -2 415 253 197 278 241 9 chr15 57178767 57178875 -44201646 + L2 LINE L2 3138 3270 -2 447 92 0 0 chr15 57180669 57180734 -44199787 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 2005 125 0 4 chr15 57180739 57181019 -44199502 - AluSp SINE Alu -34 279 1 18901 70 11 6 chr15 57181827 57185331 -44195190 + L1PA6 LINE L1 2640 6154 0 5922 204 129 61 chr15 57185658 57188465 -44192056 + L1MCa LINE L1 29 3030 -3396 269 199 88 29 chr15 57188642 57188778 -44191743 + L1ME4a LINE L1 5740 5883 -238 303 226 48 0 chr15 57188850 57188934 -44191587 + L1ME4a LINE L1 6031 6118 -3 378 274 115 58 chr15 57189604 57189812 -44190709 - L1MC4a LINE L1 -1737 6071 5852 1119 271 43 35 chr15 57189894 57190377 -44190144 - L1MC4a LINE L1 -1982 5826 5340 1875 139 0 0 chr15 57190510 57190769 -44189752 - AluSx SINE Alu -30 282 24 475 311 70 25 chr15 57190877 57191192 -44189329 - L1MC4a LINE L1 -1044 5102 4774 228 297 53 24 chr15 57191381 57191590 -44188931 - L1MC4a LINE L1 -1563 4583 4369 2340 96 7 0 chr15 57191746 57192039 -44188482 - AluSc SINE Alu -14 295 1 692 269 144 41 chr15 57192041 57192479 -44188042 + HAL1 LINE L1 332 814 -1693 925 216 70 84 chr15 57192480 57192851 -44187670 - MLT1A2 LTR MaLR -2 372 7 2030 105 40 53 chr15 57195083 57195463 -44185058 - THE1C LTR MaLR 0 375 1 363 232 36 9 chr15 57196065 57196177 -44184344 - MLT1I LTR MaLR -235 174 60 1174 236 41 16 chr15 57196548 57197027 -44183494 - MLT1E LTR MaLR -8 585 1 1459 90 0 5 chr15 57197059 57197260 -44183261 + L1PA7 LINE L1 5942 6141 -13 368 267 33 0 chr15 57197822 57197912 -44182609 - L2 LINE L2 -2 3270 3178 21 0 0 0 chr15 57198786 57198807 -44181714 + AT_rich Low_complexity Low_complexity 1 21 0 1608 108 42 0 chr15 57198821 57199080 -44181441 + L1MA2 LINE L1 6035 6304 0 189 0 0 0 chr15 57199111 57199132 -44181389 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 2076 90 0 60 chr15 57199134 57199435 -44181086 - AluSx SINE Alu -29 283 1 199 333 61 113 chr15 57199472 57199849 -44180672 - L3 LINE CR1 -43 1534 1180 2090 116 41 80 chr15 57199849 57200116 -44180405 + MER57A LTR ERV1 1 248 -155 1892 140 13 32 chr15 57200116 57200431 -44180090 - AluSx SINE Alu -3 309 1 2090 116 41 80 chr15 57200431 57200578 -44179943 + MER57A LTR ERV1 248 399 -4 199 333 61 113 chr15 57200578 57200624 -44179897 - L3 LINE CR1 -397 1180 1133 259 342 0 0 chr15 57200857 57200936 -44179585 - L3 LINE CR1 -453 1124 1046 250 288 45 18 chr15 57201075 57201186 -44179335 + MIR SINE MIR 34 147 -115 448 275 23 0 chr15 57203161 57203292 -44177229 + MIR SINE MIR 14 147 -115 917 290 116 55 chr15 57203528 57203947 -44176574 + L2 LINE L2 1638 2121 -1193 1939 153 3 0 chr15 57203947 57204235 -44176286 - AluSx SINE Alu -23 289 1 917 290 116 55 chr15 57204235 57204542 -44175979 + L2 LINE L2 2121 2408 -906 1506 154 80 25 chr15 57204764 57205050 -44175471 - AluJb SINE Alu 0 312 11 314 286 76 137 chr15 57205059 57205374 -44175147 + L2 LINE L2 2972 3267 -5 365 320 76 26 chr15 57205410 57205586 -44174935 + MIR SINE MIR 20 192 -70 412 301 97 51 chr15 57206865 57207081 -44173440 + MIR SINE MIR 34 259 -3 974 282 19 39 chr15 57207170 57207582 -44172939 + MLT1I LTR MaLR 1 404 -5 1971 134 0 3 chr15 57207931 57208251 -44172270 + AluSx SINE Alu 1 319 0 425 107 24 0 chr15 57208299 57208383 -44172138 + L1MB4 LINE L1 6095 6180 0 813 163 58 41 chr15 57209012 57209184 -44171337 + AluJo SINE Alu 1 175 -137 523 135 208 0 chr15 57209286 57209523 -44170998 + AluJo SINE Alu 181 437 0 302 236 44 31 chr15 57209669 57209808 -44170713 - MIR SINE MIR -62 146 3 15389 168 36 6 chr15 57210684 57213455 -44167066 - L1PBa LINE L1 -1884 4978 2289 2387 100 3 0 chr15 57213455 57213764 -44166757 - AluSp SINE Alu -3 310 1 2359 103 0 0 chr15 57213769 57214079 -44166442 - AluSg SINE Alu 0 310 1 15389 168 36 6 chr15 57214079 57215770 -44164751 - L1PBa LINE L1 -4576 2286 378 1851 141 12 29 chr15 57215770 57216122 -44164399 - MLT2A2 LTR ERVL -144 309 1 275 279 163 41 chr15 57216259 57216431 -44164090 - MIR SINE MIR -57 205 13 2070 109 7 3 chr15 57216517 57216800 -44163721 + AluSx SINE Alu 1 284 -28 487 272 0 40 chr15 57216802 57216927 -44163594 + MER5B DNA MER1_type 56 175 -3 1678 155 20 32 chr15 57217479 57217827 -44162694 - L1MC2 LINE L1 -186 6158 5815 552 262 82 34 chr15 57217838 57218443 -44162078 - L1MDb LINE L1 -4788 1799 1128 440 113 142 9 chr15 57218476 57218582 -44161939 - L1MC3 LINE L1 0 7785 7666 417 291 60 28 chr15 57218582 57218764 -44161757 + L1ME LINE L1 5068 5255 -891 724 85 19 0 chr15 57218809 57218915 -44161606 + L1PB1 LINE L1 6043 6150 -1 3785 143 16 2 chr15 57218932 57219553 -44160968 + L1PA16 LINE L1 5523 6152 -14 28 19 0 56 chr15 57219555 57219609 -44160912 + AT_rich Low_complexity Low_complexity 1 51 0 379 303 141 41 chr15 57219631 57219994 -44160527 + L1ME LINE L1 5366 5764 -398 534 294 28 9 chr15 57220535 57220746 -44159775 - MLT1J LTR MaLR -296 215 1 337 354 94 39 chr15 57221112 57221500 -44159021 - L2 LINE L2 -226 3046 2633 343 275 42 33 chr15 57221513 57221633 -44158888 - L2 LINE L2 -944 2370 2250 798 236 140 36 chr15 57221811 57222146 -44158375 + L3 LINE CR1 504 873 -704 283 280 32 21 chr15 57222624 57222717 -44157804 + L2 LINE L2 3179 3272 0 194 54 0 54 chr15 57224104 57224141 -44156380 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 870 151 8 0 chr15 57224150 57224276 -44156245 + FLAM_C SINE Alu 1 127 -16 357 118 5 12 chr15 57224795 57224999 -44155522 + AluSx SINE Alu 1 248 -52 788 198 117 15 chr15 57224999 57225196 -44155325 + AluJo SINE Alu 85 301 -11 3823 140 34 24 chr15 57226476 57227177 -44153344 - MER50 LTR ERV1 -26 708 1 2666 97 57 102 chr15 57227622 57228259 -44152262 - MER4B LTR ERV1 0 779 1 29 28 0 0 chr15 57229399 57229435 -44151086 + AT_rich Low_complexity Low_complexity 1 36 0 212 312 24 88 chr15 57229506 57229575 -44150946 - L2 LINE L2 -5 3308 3249 2392 74 0 7 chr15 57229575 57229874 -44150647 + AluY SINE Alu 1 297 -14 212 312 24 88 chr15 57229874 57229929 -44150592 - L2 LINE L2 -64 3249 3192 1363 148 0 0 chr15 57230380 57230583 -44149938 + AluSq SINE Alu 96 298 -15 257 275 165 11 chr15 57230599 57230690 -44149831 + MIR SINE MIR 158 262 0 790 241 30 5 chr15 57230822 57231021 -44149500 + MER63A DNA MER1_type 7 210 0 1683 162 3 37 chr15 57231319 57231615 -44148906 + AluJb SINE Alu 15 300 -12 315 274 74 84 chr15 57231802 57231992 -44148529 + L1M2a LINE L1 522 709 -6459 526 207 101 71 chr15 57232985 57233154 -44147367 - MER69A DNA AcHobo 0 177 4 397 295 73 11 chr15 57233177 57233348 -44147173 - MIR SINE MIR -50 212 32 396 0 0 0 chr15 57234119 57234163 -44146358 + (CA)n Simple_repeat Simple_repeat 2 45 0 275 204 0 0 chr15 57234721 57234770 -44145751 - L2 LINE L2 -14 3299 3251 * 363 283 0 54 chr15 57234743 57234864 -44145657 + L2 LINE L2 3137 3251 -21 249 33 0 0 chr15 57234870 57234900 -44145621 + (CAT)n Simple_repeat Simple_repeat 3 32 0 324 256 68 74 chr15 57235259 57235435 -44145086 - MIR SINE MIR -5 257 83 199 344 10 10 chr15 57235793 57235889 -44144632 - MIR SINE MIR -14 248 153 2872 82 8 0 chr15 57236343 57236695 -44143826 - THE1A LTR MaLR 0 355 1 12268 93 6 5 chr15 57236698 57238272 -44142249 - THE1A-int LTR MaLR -4 1576 1 2798 85 6 0 chr15 57238272 57238624 -44141897 - THE1A LTR MaLR 0 355 2 2094 147 0 0 chr15 57238682 57238988 -44141533 + AluSx SINE Alu 1 306 -6 2072 135 0 0 chr15 57239000 57239288 -44141233 + AluSc SINE Alu 1 288 -21 381 322 11 57 chr15 57239450 57239627 -44140894 + L3 LINE CR1 1114 1282 -295 1659 191 10 0 chr15 57239681 57239974 -44140547 - AluJo SINE Alu -16 296 1 265 250 46 28 chr15 57240496 57240604 -44139917 + GA-rich Low_complexity Low_complexity 4 113 0 1801 153 17 10 chr15 57240836 57241131 -44139390 + AluJb SINE Alu 1 297 -15 350 78 94 0 chr15 57242839 57242903 -44137618 + L1MA5 LINE L1 6209 6278 -22 539 291 98 59 chr15 57242972 57243253 -44137268 - MLT1K LTR MaLR -3 585 266 249 33 0 0 chr15 57243253 57243283 -44137238 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 539 291 98 59 chr15 57243283 57243444 -44137077 - MLT1K LTR MaLR -322 266 113 8102 27 22 0 chr15 57243662 57244589 -44135932 - L1PA3 LINE L1 -5 6150 5220 2342 76 0 13 chr15 57244653 57244954 -44135567 - AluY SINE Alu -14 297 1 454 230 142 27 chr15 57245061 57245209 -44135312 - HAL1 LINE L1 0 2507 2343 346 67 0 0 chr15 57245210 57245255 -44135266 - MER54B LTR ERVL 0 793 749 968 213 0 0 chr15 57245288 57245452 -44135069 - FRAM SINE Alu -2 164 1 5163 153 17 22 chr15 57245453 57246336 -44134185 - MER54A LTR ERVL -30 871 6 4785 254 107 48 chr15 57246337 57246952 -44133569 - HAL1 LINE L1 -160 2347 1770 3555 84 0 22 chr15 57246952 57247406 -44133115 - MLT2A1 LTR ERVL 0 444 1 4785 254 107 48 chr15 57247406 57247699 -44132822 - HAL1 LINE L1 -737 1770 1496 2690 133 62 5 chr15 57247699 57248104 -44132417 - MSTA LTR MaLR 0 428 1 4785 254 107 48 chr15 57248104 57248439 -44132082 - HAL1 LINE L1 -1011 1496 1182 2326 92 3 3 chr15 57248439 57248743 -44131778 - AluY SINE Alu -7 304 1 4785 254 107 48 chr15 57248743 57249346 -44131175 - HAL1 LINE L1 -1325 1182 369 1098 171 9 55 chr15 57249346 57249563 -44130958 - MER3 DNA MER1_type 0 209 3 4785 254 107 48 chr15 57249563 57249713 -44130808 - HAL1 LINE L1 -2138 369 229 509 244 24 24 chr15 57249715 57249838 -44130683 + L2 LINE L2 3191 3313 0 585 313 78 9 chr15 57249900 57250130 -44130391 + LTR67 LTR ERVL 2 247 -310 304 148 66 0 chr15 57250868 57250929 -44129592 + L1MD3 LINE L1 7212 7276 -719 710 197 0 0 chr15 57250931 57251053 -44129468 + MLT1F1 LTR MaLR 1 122 -445 2778 168 43 38 chr15 57251055 57251537 -44128984 + L1MD3 LINE L1 7403 7890 -105 2469 80 6 0 chr15 57251537 57251848 -44128673 + AluSp SINE Alu 1 313 0 2778 168 43 38 chr15 57251848 57251943 -44128578 + L1MD3 LINE L1 7890 7983 -12 301 326 11 0 chr15 57252600 57252692 -44127829 - L2 LINE L2 -5 3267 3175 918 277 60 31 chr15 57252692 57253078 -44127443 + L1ME3A LINE L1 5555 5951 -219 2907 86 0 23 chr15 57253461 57253846 -44126675 + L1PA6 LINE L1 5768 6143 -11 2280 87 10 0 chr15 57253861 57254161 -44126360 + AluSp SINE Alu 1 303 -10 390 371 48 0 chr15 57254522 57254732 -44125789 - L2 LINE L2 -656 2658 2439 2640 39 0 3 chr15 57255209 57255543 -44124978 - AluY SINE Alu 0 333 1 1465 169 0 16 chr15 57255982 57256223 -44124298 + MSTA LTR MaLR 1 237 -191 773 93 19 0 chr15 57256223 57256330 -44124191 - MSTA LTR MaLR 0 428 320 439 257 69 40 chr15 57256678 57256853 -44123668 - MIR SINE MIR -43 219 40 2048 148 45 34 chr15 57257283 57257640 -44122881 - THE1B LTR MaLR -3 361 1 216 360 12 8 chr15 57257663 57257774 -44122747 + MIR SINE MIR 10 118 -90 682 171 264 0 chr15 57258099 57258239 -44122282 + MER45A DNA AcHobo 2 178 0 838 186 10 93 chr15 57258599 57258674 -44121847 + MER5A DNA MER1_type 1 81 -108 1898 138 10 10 chr15 57258674 57258964 -44121557 + AluJo SINE Alu 1 290 -22 2659 104 6 8 chr15 57258971 57259327 -44121194 - THE1A LTR MaLR 0 355 1 838 186 10 93 chr15 57259327 57259447 -44121074 + MER5A DNA MER1_type 87 187 -2 24 0 0 0 chr15 57260482 57260506 -44120015 + AT_rich Low_complexity Low_complexity 1 24 0 300 289 0 0 chr15 57260556 57260632 -44119889 + MIR SINE MIR 183 258 -4 280 336 33 25 chr15 57260666 57260788 -44119733 - L2 LINE L2 -33 3239 3117 754 197 0 0 chr15 57260899 57261031 -44119490 + FRAM SINE Alu 35 166 -10 234 0 0 0 chr15 57261031 57261057 -44119464 + (GGGGA)n Simple_repeat Simple_repeat 3 28 0 214 292 152 11 chr15 57261727 57261905 -44118616 + MIR SINE MIR 10 212 -50 434 325 80 18 chr15 57262391 57262554 -44117967 - L2 LINE L2 0 3272 3100 1602 184 17 0 chr15 57262918 57263206 -44117315 + L1PB4 LINE L1 5864 6156 0 1290 181 0 62 chr15 57263255 57263514 -44117007 - AluJo SINE Alu -41 271 29 245 208 83 0 chr15 57263520 57263592 -44116929 + L1M1 LINE L1 17 94 -7471 248 159 0 0 chr15 57263623 57263665 -44116856 - Alu SINE Alu -268 35 1 871 246 66 8 chr15 57263665 57263921 -44116600 - L1ME LINE L1 -298 5823 5553 523 238 245 0 chr15 57264126 57264273 -44116248 - MER5A DNA MER1_type 0 189 7 317 278 11 0 chr15 57264271 57264361 -44116160 + MIR3 SINE MIR 88 178 -30 * 2084 113 0 3 chr15 57264385 57264669 -44115852 - AluSx SINE Alu -29 283 1 191 32 65 0 chr15 57267920 57267951 -44112570 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 224 306 0 0 chr15 57269137 57269199 -44111322 - MIR3 SINE MIR -21 187 126 1982 132 0 0 chr15 57269210 57269483 -44111038 + AluSx SINE Alu 1 273 -39 402 141 40 10 chr15 57269483 57269582 -44110939 + GA-rich Low_complexity Low_complexity 2 103 0 201 250 0 0 chr15 57269600 57269636 -44110885 + A-rich Low_complexity Low_complexity 3 38 0 2853 186 19 45 chr15 57271063 57271161 -44109360 + L1MC2 LINE L1 4900 4999 -1345 1824 144 26 30 chr15 57271161 57271466 -44109055 + AluSx SINE Alu 1 304 -8 2853 186 19 45 chr15 57271466 57271924 -44108597 + L1MC2 LINE L1 4999 5418 -926 2227 125 0 0 chr15 57271924 57272236 -44108285 + AluSx SINE Alu 1 312 0 2853 186 19 45 chr15 57272236 57272660 -44107861 + L1MC2 LINE L1 5418 5851 -493 1684 96 0 8 chr15 57272639 57272661 -44107860 + L1P LINE L1 1804 1825 -4321 * 1886 159 0 0 chr15 57272661 57272944 -44107577 + AluSx SINE Alu 1 283 -29 1684 96 0 8 chr15 57272944 57273161 -44107360 + L1P LINE L1 1825 2041 -4105 2069 123 26 13 chr15 57273935 57274237 -44106284 - AluSx SINE Alu -6 306 1 226 333 19 0 chr15 57275262 57275370 -44105151 + (CATATA)n Simple_repeat Simple_repeat 3 112 0 1116 52 0 15 chr15 57275997 57276133 -44104388 - AluSp/q SINE Alu -16 297 164 1184 115 0 0 chr15 57276646 57276811 -44103710 - AluSg/x SINE Alu -4 306 142 2280 82 0 3 chr15 57276925 57277228 -44103293 - AluY SINE Alu -9 302 1 661 150 10 0 chr15 57278485 57278585 -44101936 + AluSg/x SINE Alu 197 297 -15 1290 227 34 70 chr15 57278593 57278773 -44101748 + L1MC4 LINE L1 6535 6720 -1322 1871 97 71 11 chr15 57278773 57278917 -44101604 - AluSp SINE Alu -30 283 149 234 0 0 0 chr15 57278917 57278943 -44101578 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1871 97 71 11 chr15 57278943 57279065 -44101456 - AluSp SINE Alu -164 149 1 2045 124 7 7 chr15 57279066 57279356 -44101165 - AluSx SINE Alu -22 290 1 1290 227 34 70 chr15 57279356 57279557 -44100964 + L1MC4 LINE L1 6719 6904 -1138 1116 171 0 0 chr15 57279563 57279733 -44100788 + FRAM SINE Alu 2 171 -5 1632 100 0 0 chr15 57279738 57279948 -44100573 + AluSc SINE Alu 87 296 -13 1464 143 0 22 chr15 57279977 57280207 -44100314 + AluJo SINE Alu 12 236 -76 2126 107 3 3 chr15 57280307 57280596 -44099925 - AluSx SINE Alu -23 289 1 515 109 0 65 chr15 57280603 57280695 -44099826 - FLAM_C SINE Alu -3 140 55 682 172 60 0 chr15 57280714 57280830 -44099691 - FLAM_C SINE Alu -19 124 2 2245 83 0 20 chr15 57280912 57281214 -44099307 + AluY SINE Alu 1 296 -15 1260 220 11 7 chr15 57281579 57281852 -44098669 - AluJb SINE Alu -11 301 28 226 276 105 13 chr15 57282617 57282693 -44097828 - MER5B DNA MER1_type -6 172 90 469 292 49 0 chr15 57282982 57283126 -44097395 - MIR3 SINE MIR -24 184 34 1837 156 28 0 chr15 57284332 57284621 -44095900 - AluJb SINE Alu -15 297 1 2180 111 0 13 chr15 57284750 57285048 -44095473 + AluSg SINE Alu 1 294 -16 239 247 5 93 chr15 57286400 57286594 -44093927 + GA-rich Low_complexity Low_complexity 3 179 0 2102 109 10 7 chr15 57286707 57287001 -44093520 - AluSx SINE Alu -17 295 1 1414 159 16 118 chr15 57288362 57288726 -44091795 + MER7A DNA MER2_type 21 345 -1 406 296 89 35 chr15 57290323 57290492 -44090029 - MER5A DNA MER1_type -2 187 10 253 296 37 12 chr15 57291041 57291122 -44089399 + MIR SINE MIR 109 191 -71 716 260 117 36 chr15 57291310 57291695 -44088826 - L1ME4a LINE L1 -27 6094 5679 6434 71 20 33 chr15 57291712 57292700 -44087821 - SVA Other Other 0 1386 433 4034 62 28 2 chr15 57292749 57293281 -44087240 - SVA Other Other -645 741 196 207 270 0 40 chr15 57293599 57293673 -44086848 + MIR3 SINE MIR 121 191 -17 1840 183 0 3 chr15 57294354 57294665 -44085856 + AluJo SINE Alu 1 310 -2 2373 66 7 3 chr15 57295846 57296148 -44084373 + AluSc SINE Alu 1 303 -6 21 36 0 0 chr15 57296317 57296345 -44084176 + AT_rich Low_complexity Low_complexity 1 28 0 2174 119 0 16 chr15 57296491 57296802 -44083719 - AluSx SINE Alu 0 312 7 2106 94 56 14 chr15 57296854 57297142 -44083379 - AluSp SINE Alu -10 303 4 971 123 0 0 chr15 57297495 57297625 -44082896 + FRAM SINE Alu 23 152 -24 468 297 72 10 chr15 57297793 57297988 -44082533 + L2 LINE L2 3107 3313 0 759 151 220 25 chr15 57298737 57298896 -44081625 - MLT1F1 LTR MaLR 0 567 378 356 134 256 12 chr15 57298896 57298978 -44081543 - MLT1F1 LTR MaLR -461 106 5 2425 63 0 0 chr15 57299706 57299993 -44080528 + AluY SINE Alu 1 287 -24 195 342 148 34 chr15 57300254 57300640 -44079881 - L2 LINE L2 -18 3254 2825 237 294 188 12 chr15 57300929 57301014 -44079507 - L2 LINE L2 -39 3233 3134 571 198 0 18 chr15 57301224 57301335 -44079186 + MER47A DNA MER2_type 11 119 -247 422 168 0 192 chr15 57301338 57301406 -44079115 + MER47A DNA MER2_type 266 301 -2022 574 260 31 0 chr15 57301406 57301533 -44078988 - FLAM_C SINE Alu -2 131 1 422 168 0 192 chr15 57301533 57301589 -44078932 + MER47A DNA MER2_type 301 366 0 1459 167 139 57 chr15 57301995 57302361 -44078160 + MSTD LTR MaLR 1 396 0 960 67 8 0 chr15 57302450 57302570 -44077951 + AluSq/x SINE Alu 3 123 -189 1364 208 15 7 chr15 57302721 57302990 -44077531 - AluJo SINE Alu -35 277 7 638 207 129 0 chr15 57304311 57304451 -44076070 - MER5A DNA MER1_type -28 161 4 4133 190 107 16 chr15 57304690 57305326 -44075195 + Tigger6a DNA MER2_type 2 810 -787 2155 125 0 6 chr15 57305326 57305638 -44074883 + AluSx SINE Alu 1 310 -2 4133 190 107 16 chr15 57305638 57305939 -44074582 + Tigger6a DNA MER2_type 810 1082 -1 266 264 28 0 chr15 57305942 57306014 -44074507 + (TATG)n Simple_repeat Simple_repeat 3 76 0 1668 176 0 34 chr15 57307047 57307365 -44073156 + AluSx SINE Alu 1 308 0 1032 85 0 0 chr15 57307376 57307505 -44073016 + AluSq/x SINE Alu 1 129 -184 252 320 88 17 chr15 57307741 57307922 -44072599 + L2 LINE L2 3120 3313 0 1377 167 27 59 chr15 57308205 57308543 -44071978 - MER65A LTR ERV1 0 445 53 2798 86 21 3 chr15 57308543 57308916 -44071605 - L1PA10 LINE L1 0 6168 5789 1377 167 27 59 chr15 57308916 57308968 -44071553 - MER65A LTR ERV1 -392 53 1 21 71 0 0 chr15 57309976 57310018 -44070503 + AT_rich Low_complexity Low_complexity 1 42 0 455 286 57 41 chr15 57310185 57310430 -44070091 - L1ME LINE L1 -327 5794 5546 354 263 31 10 chr15 57310533 57310736 -44069785 - L1ME LINE L1 -660 5506 5293 1734 103 117 32 chr15 57310747 57311028 -44069493 + AluSq SINE Alu 1 305 -8 2288 110 0 3 chr15 57311958 57312266 -44068255 + AluSx SINE Alu 1 307 -5 443 127 0 0 chr15 57312372 57312443 -44068078 + L1MB2 LINE L1 6070 6140 -31 1594 188 37 20 chr15 57312525 57312823 -44067698 + AluJb SINE Alu 3 305 -7 1041 196 71 5 chr15 57313027 57313251 -44067270 - AluJo SINE Alu -51 261 23 437 293 155 55 chr15 57313251 57313751 -44066770 + L2 LINE L2 2754 3309 -4 248 324 17 74 chr15 57313914 57314090 -44066431 - L1ME3A LINE L1 -1 6169 6004 2090 114 13 7 chr15 57314219 57314517 -44066004 - AluSq SINE Alu -13 300 1 828 239 125 11 chr15 57314519 57314791 -44065730 - L1ME3A LINE L1 -223 5947 5645 1018 194 107 0 chr15 57314791 57315007 -44065514 - Tigger5 DNA MER2_type 0 2323 2085 298 222 0 16 chr15 57315028 57315091 -44065430 - Tigger5 DNA MER2_type -2261 62 1 699 157 20 68 chr15 57315091 57315238 -44065283 - L1ME3A LINE L1 -524 5646 5507 201 132 0 0 chr15 57315262 57315300 -44065221 + (GA)n Simple_repeat Simple_repeat 2 39 0 236 256 24 0 chr15 57315352 57315434 -44065087 - L1ME LINE L1 -846 5300 5217 410 191 21 0 chr15 57315456 57315550 -44064971 - L1MA8 LINE L1 -4 6287 6192 233 383 0 12 chr15 57315650 57315731 -44064790 + polypurine Low_complexity Low_complexity 3 82 0 1679 148 88 31 chr15 57316538 57316890 -44063631 + THE1C LTR MaLR 1 372 -3 247 240 173 0 chr15 57317186 57317261 -44063260 - L2 LINE L2 -1 3271 3184 1831 154 14 3 chr15 57317400 57317692 -44062829 - AluJb SINE Alu -2 310 16 260 222 89 11 chr15 57317741 57317831 -44062690 - L1ME4a LINE L1 -4 6117 6021 925 204 0 0 chr15 57318777 57318944 -44061577 - FAM SINE Alu -12 173 7 422 257 29 0 chr15 57320319 57320424 -44060097 + MIR SINE MIR 141 248 -14 21 0 0 0 chr15 57321252 57321273 -44059248 + AT_rich Low_complexity Low_complexity 1 21 0 2341 105 0 7 chr15 57321678 57321982 -44058539 + AluSg SINE Alu 1 302 -8 2260 104 3 0 chr15 57322005 57322304 -44058217 + AluSx SINE Alu 1 300 -12 312 205 193 0 chr15 57322765 57322848 -44057673 - MIR SINE MIR -115 147 49 838 187 13 19 chr15 57322944 57323099 -44057422 - FRAM SINE Alu -30 146 1 3301 169 125 85 chr15 57323100 57323689 -44056832 - L1MC3 LINE L1 -6 7779 7215 295 197 30 15 chr15 57323689 57323755 -44056766 - MLT1F1 LTR MaLR -456 111 45 3301 169 125 85 chr15 57323755 57323983 -44056538 - L1MC3 LINE L1 -570 7215 6998 297 0 0 0 chr15 57323983 57324016 -44056505 + (TG)n Simple_repeat Simple_repeat 1 33 0 * 357 24 0 0 chr15 57324015 57324057 -44056464 + (GA)n Simple_repeat Simple_repeat 1 42 0 3301 169 125 85 chr15 57324016 57324104 -44056417 - L1MC3 LINE L1 -787 6998 6812 240 59 0 0 chr15 57324104 57324138 -44056383 + (GA)n Simple_repeat Simple_repeat 1 34 0 398 115 0 16 chr15 57324139 57324200 -44056321 - L1MC3 LINE L1 -929 6856 6797 16813 66 16 1 chr15 57324211 57326998 -44053523 - L1PA6 LINE L1 -1 6153 3281 481 328 119 4 chr15 57328085 57328320 -44052201 - MIR SINE MIR 0 262 1 1704 185 112 62 chr15 57328882 57329363 -44051158 + MLT1D LTR MaLR 1 505 0 312 306 0 0 chr15 57329471 57329556 -44050965 - MIR3 SINE MIR -3 205 121 2151 92 10 7 chr15 57329759 57330051 -44050470 - AluSg SINE Alu -17 293 1 2175 218 48 28 chr15 57330101 57330596 -44049925 + MLT1D LTR MaLR 1 505 0 23 54 0 0 chr15 57331019 57331056 -44049465 + AT_rich Low_complexity Low_complexity 1 37 0 2221 109 0 19 chr15 57331056 57331369 -44049152 - AluSx SINE Alu -5 307 1 2033 116 3 0 chr15 57331490 57331774 -44048747 + AluY SINE Alu 1 285 -26 2410 57 3 10 chr15 57331966 57332264 -44048257 - AluY SINE Alu -15 296 1 192 77 0 0 chr15 57332345 57332371 -44048150 + (TC)n Simple_repeat Simple_repeat 1 26 0 2203 111 7 0 chr15 57332371 57332669 -44047852 - AluSq SINE Alu -13 300 1 276 225 133 33 chr15 57332952 57333072 -44047449 + MIR SINE MIR 67 198 -64 2380 159 86 49 chr15 57333367 57333399 -44047122 + L1MA4 LINE L1 5748 5777 -523 423 0 0 0 chr15 57333399 57333446 -44047075 + (CA)n Simple_repeat Simple_repeat 2 48 0 2380 159 86 49 chr15 57333446 57333880 -44046641 + L1MA4 LINE L1 5777 6193 -107 2362 53 7 0 chr15 57333880 57334185 -44046336 + AluY SINE Alu 1 307 0 2380 159 86 49 chr15 57334185 57334196 -44046325 + L1MA4 LINE L1 6193 6202 -98 2365 94 3 0 chr15 57334196 57334495 -44046026 + AluSp SINE Alu 1 300 -13 2380 159 86 49 chr15 57334495 57334547 -44045974 + L1MA4 LINE L1 6202 6300 0 1907 156 16 0 chr15 57334572 57334879 -44045642 + AluJb SINE Alu 1 312 0 1327 106 0 30 chr15 57335425 57335623 -44044898 + AluY SINE Alu 114 305 -6 23 0 0 29 chr15 57335832 57335849 -44044672 + AT_rich Low_complexity Low_complexity 1 17 -16 2071 114 3 7 chr15 57335849 57336138 -44044383 + AluSx SINE Alu 1 288 -24 23 0 0 29 chr15 57336138 57336154 -44044367 + AT_rich Low_complexity Low_complexity 17 33 0 264 200 271 14 chr15 57337667 57337737 -44042784 - MER5A DNA MER1_type -93 96 9 1656 178 3 43 chr15 57337905 57338209 -44042312 + AluJo SINE Alu 1 292 -20 193 302 0 0 chr15 57338216 57338259 -44042262 - MIR SINE MIR -161 101 59 28 29 0 0 chr15 57338318 57338353 -44042168 + AT_rich Low_complexity Low_complexity 1 35 0 434 223 48 29 chr15 57339674 57339777 -44040744 - MER91C DNA MER1_type 0 140 36 618 207 195 17 chr15 57341597 57341715 -44038806 + MER3 DNA MER1_type 5 101 -108 195 42 0 0 chr15 57341715 57341739 -44038782 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 618 207 195 17 chr15 57341739 57341794 -44038727 + MER3 DNA MER1_type 101 209 0 2491 59 0 7 chr15 57343025 57343330 -44037191 + AluY SINE Alu 1 303 -8 1831 134 86 3 chr15 57343822 57344135 -44036386 + MER46B DNA MER2_type 1 214 -22 825 124 41 8 chr15 57344136 57344257 -44036264 + L1PB1 LINE L1 6014 6138 -13 471 233 20 0 chr15 57344264 57344414 -44036107 + GA-rich Low_complexity Low_complexity 1 153 0 350 126 92 0 chr15 57344418 57344505 -44036016 + (CAGG)n Simple_repeat Simple_repeat 2 96 0 548 88 7 95 chr15 57344505 57344809 -44035712 + (GGGA)n Simple_repeat Simple_repeat 1 277 0 235 345 160 31 chr15 57345014 57345339 -44035182 - L2 LINE L2 -7 3265 2899 25 65 0 0 chr15 57347853 57347899 -44032622 + AT_rich Low_complexity Low_complexity 1 46 0 1968 201 54 14 chr15 57348299 57348817 -44031704 + MLT1F LTR MaLR 1 537 -5 2068 93 69 3 chr15 57349084 57349374 -44031147 + AluSc SINE Alu 1 309 0 758 112 0 45 chr15 57350612 57350746 -44029775 + L1MA4 LINE L1 6173 6300 0 2436 74 0 3 chr15 57351599 57351895 -44028626 + AluY SINE Alu 1 295 -16 2371 64 7 0 chr15 57354063 57354370 -44026151 + AluSp SINE Alu 1 309 0 243 264 0 0 chr15 57355982 57356035 -44024486 + T-rich Low_complexity Low_complexity 3 55 0 196 279 29 29 chr15 57356137 57356205 -44024316 - MIR3 SINE MIR -3 205 138 865 193 30 0 chr15 57356979 57357145 -44023376 + AluSg/x SINE Alu 138 308 -2 412 236 0 0 chr15 57357972 57358061 -44022460 + MIR SINE MIR 174 262 0 1030 142 0 6 chr15 57358150 57358323 -44022198 + Charlie3 DNA MER1_type 115 279 -2431 28 29 0 0 chr15 57359238 57359273 -44021248 + AT_rich Low_complexity Low_complexity 1 35 0 2125 100 11 0 chr15 57360434 57360738 -44019783 + AluSp SINE Alu 2 308 0 591 276 32 31 chr15 57360741 57360976 -44019545 - MIR SINE MIR -14 248 3 1289 214 119 49 chr15 57360987 57361256 -44019265 + LTR37B LTR ERV1 10 322 -146 1478 149 168 19 chr15 57361256 57361518 -44019003 - AluJo SINE Alu -1 301 1 1289 214 119 49 chr15 57361518 57361677 -44018844 + LTR37B LTR ERV1 322 468 0 275 325 17 26 chr15 57362233 57362350 -44018171 + MIR SINE MIR 81 196 -66 2309 80 7 13 chr15 57364659 57364960 -44015561 + AluSp SINE Alu 1 299 -14 256 144 10 144 chr15 57365907 57366011 -44014510 - L1ME4a LINE L1 -11 6110 6021 1137 102 102 10 chr15 57366015 57366211 -44014310 - Tigger1 DNA MER2_type 0 2418 2205 394 247 12 0 chr15 57366231 57366316 -44014205 - Tigger1 DNA MER2_type -2332 86 1 1990 115 0 47 chr15 57366384 57366680 -44013841 + AluSx SINE Alu 17 298 -14 557 208 0 17 chr15 57366779 57366899 -44013622 + L1MB8 LINE L1 6060 6177 -1 2061 124 3 0 chr15 57367246 57367561 -44012960 + AluSx SINE Alu 1 316 0 2355 100 0 0 chr15 57367561 57367870 -44012651 + AluSg1 SINE Alu 1 309 0 204 200 0 0 chr15 57368687 57368732 -44011789 + (TG)n Simple_repeat Simple_repeat 2 46 0 560 304 138 18 chr15 57368740 57368964 -44011557 - MIR SINE MIR -10 252 2 186 43 0 0 chr15 57369056 57369079 -44011442 + (A)n Simple_repeat Simple_repeat 1 23 0 2221 109 3 3 chr15 57369084 57369388 -44011133 + AluSp SINE Alu 1 304 -9 443 157 112 0 chr15 57369617 57369706 -44010815 + MER94 DNA DNA 2 100 -34 644 168 11 28 chr15 57370571 57370750 -44009771 + GA-rich Low_complexity Low_complexity 1 176 0 1786 148 7 14 chr15 57371681 57371991 -44008530 - AluJb SINE Alu 0 308 1 2288 106 0 6 chr15 57373848 57374159 -44006362 + AluSc SINE Alu 1 309 0 2027 130 7 7 chr15 57376105 57376397 -44004124 - AluSq SINE Alu -21 292 1 2342 87 0 0 chr15 57377818 57378107 -44002414 - AluY SINE Alu -22 289 1 2350 135 22 8 chr15 57378800 57379155 -44001366 - MER46B DNA MER2_type -1 235 1 512 279 17 41 chr15 57382089 57382261 -43998260 + MIR SINE MIR 90 257 -5 255 289 50 25 chr15 57383343 57383464 -43997057 - L1MEd LINE L1 -5984 135 12 21 0 0 0 chr15 57383724 57383745 -43996776 + AT_rich Low_complexity Low_complexity 1 21 0 553 279 146 17 chr15 57383745 57384032 -43996489 + L2 LINE L2 2990 3313 0 783 209 79 0 chr15 57384092 57384269 -43996252 - MIR SINE MIR 0 262 72 2086 132 0 3 chr15 57384361 57384656 -43995865 + AluSx SINE Alu 1 294 -18 502 314 99 0 chr15 57384743 57384934 -43995587 - MIR SINE MIR -45 217 8 2094 82 0 7 chr15 57386098 57386367 -43994154 - L1PA8 LINE L1 0 6172 5906 2062 150 0 0 chr15 57387036 57387330 -43993191 - AluSx SINE Alu -18 294 1 2077 130 16 3 chr15 57387672 57387979 -43992542 + AluSq SINE Alu 1 311 -2 234 0 0 0 chr15 57387996 57388022 -43992499 + (CA)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr15 57389607 57389635 -43990886 + AT_rich Low_complexity Low_complexity 1 28 0 2930 135 36 2 chr15 57390016 57390136 -43990385 + L1MB3 LINE L1 5663 5777 -406 222 91 0 0 chr15 57390136 57390169 -43990352 + (CA)n Simple_repeat Simple_repeat 2 34 0 2930 135 36 2 chr15 57390169 57390544 -43989977 + L1MB3 LINE L1 5777 6175 -8 442 316 154 33 chr15 57390544 57391032 -43989489 + L1MEc LINE L1 1277 1823 -4573 305 335 96 30 chr15 57391073 57391374 -43989147 + L1MEc LINE L1 1914 2234 -4162 322 158 0 0 chr15 57391463 57391520 -43989001 + L1M4 LINE L1 4616 4672 -1474 750 206 61 93 chr15 57391530 57391623 -43988898 + L1M4 LINE L1 4742 4836 -1310 1946 115 7 17 chr15 57391623 57391918 -43988603 + AluSx SINE Alu 1 292 -20 750 206 61 93 chr15 57391918 57391992 -43988529 + L1M4 LINE L1 4836 4911 -1235 941 200 118 0 chr15 57391992 57392187 -43988334 - MER20 DNA MER1_type 0 219 2 750 206 61 93 chr15 57392187 57392329 -43988192 + L1M4 LINE L1 4911 5042 -1104 697 182 44 25 chr15 57392331 57392490 -43988031 - MER20 DNA MER1_type -1 218 57 515 230 132 12 chr15 57392567 57392824 -43987697 + L1M4 LINE L1 5071 5358 -788 23 78 0 0 chr15 57392840 57392891 -43987630 + AT_rich Low_complexity Low_complexity 1 51 0 1011 229 112 35 chr15 57393123 57393685 -43986836 + L1MC5 LINE L1 6633 7224 -737 820 175 103 8 chr15 57393683 57393935 -43986586 + L1MA8 LINE L1 5994 6269 -22 * 1265 177 121 0 chr15 57394042 57394374 -43986147 + L1MC1 LINE L1 5917 6315 -18 2304 75 7 0 chr15 57394385 57394679 -43985842 + AluSq SINE Alu 1 296 -17 743 192 6 1 chr15 57394697 57394855 -43985666 + MER33 DNA MER1_type 1 149 -88 478 132 40 0 chr15 57394857 57394933 -43985588 - AluJo SINE Alu -176 136 58 811 161 0 35 chr15 57395064 57395207 -43985314 - FLAM_C SINE Alu 0 143 6 1343 129 23 14 chr15 57395213 57395430 -43985091 - AluJo SINE Alu -8 304 86 183 129 0 0 chr15 57397213 57397244 -43983277 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 265 315 54 28 chr15 57397611 57397723 -43982798 - MIR3 SINE MIR -108 100 9 461 56 125 14 chr15 57398788 57398860 -43981661 + MADE1 DNA Mariner 1 80 0 189 0 0 0 chr15 57399419 57399440 -43981081 + (A)n Simple_repeat Simple_repeat 1 21 0 236 224 0 35 chr15 57400283 57400341 -43980180 + L2 LINE L2 3235 3290 -23 2154 129 0 0 chr15 57400893 57401202 -43979319 + AluSx SINE Alu 1 309 -3 470 215 31 92 chr15 57401681 57401844 -43978677 + L2 LINE L2 3158 3310 -3 434 191 181 0 chr15 57402590 57402695 -43977826 - FLAM_A SINE Alu -8 125 2 189 0 0 0 chr15 57404520 57404541 -43975980 + (CCCCG)n Simple_repeat Simple_repeat 2 22 0 225 0 0 0 chr15 57404831 57404856 -43975665 + (T)n Simple_repeat Simple_repeat 1 25 0 468 0 0 0 chr15 57405251 57405303 -43975218 + (TG)n Simple_repeat Simple_repeat 2 53 0 326 23 23 0 chr15 57405359 57405402 -43975119 + (TG)n Simple_repeat Simple_repeat 2 45 0 301 40 0 122 chr15 57405461 57405535 -43974986 + (GA)n Simple_repeat Simple_repeat 1 65 0 216 0 0 0 chr15 57405595 57405619 -43974902 + (TG)n Simple_repeat Simple_repeat 2 25 0 306 0 0 0 chr15 57405678 57405712 -43974809 + (TG)n Simple_repeat Simple_repeat 2 35 0 225 247 22 90 chr15 57406778 57406867 -43973654 + L2 LINE L2 3184 3266 -6 266 254 15 0 chr15 57406881 57406948 -43973573 - MIR3 SINE MIR -3 205 138 1498 206 4 11 chr15 57406979 57407256 -43973265 - AluJb SINE Alu -37 275 1 410 263 196 38 chr15 57407344 57407553 -43972968 - MLT1G1 LTR MaLR -5 590 309 397 257 0 0 chr15 57407677 57407751 -43972770 - MER58 DNA MER1_type -312 74 1 2309 88 0 10 chr15 57407846 57408153 -43972368 + AluY SINE Alu 1 304 -7 2370 96 0 7 chr15 57408565 57408868 -43971653 + AluSc SINE Alu 2 302 -7 197 244 0 0 chr15 57408955 57408996 -43971525 + L2 LINE L2 3265 3305 -8 373 313 78 63 chr15 57409125 57409635 -43970886 + L2 LINE L2 2648 3240 -32 575 307 128 25 chr15 57409685 57410082 -43970439 + L1MC4a LINE L1 5464 5901 -220 240 86 0 0 chr15 57411479 57411514 -43969007 + (TA)n Simple_repeat Simple_repeat 2 36 0 222 253 313 0 chr15 57412586 57412669 -43967852 + L2 LINE L2 3199 3307 -6 21 0 0 0 chr15 57413151 57413172 -43967349 + AT_rich Low_complexity Low_complexity 1 21 0 449 226 212 0 chr15 57413492 57413638 -43966883 + MER5A DNA MER1_type 13 189 0 2410 54 14 7 chr15 57413655 57413952 -43966569 - AluSp SINE Alu -14 299 1 2184 114 3 3 chr15 57413952 57414250 -43966271 - AluSg SINE Alu -11 299 1 2203 95 7 7 chr15 57414302 57414598 -43965923 + AluSg SINE Alu 1 296 -14 315 306 25 31 chr15 57414658 57414818 -43965703 + MER117 DNA MER1_type 1 159 -38 331 190 0 0 chr15 57417441 57417499 -43963022 + L1MB8 LINE L1 5550 5607 -571 554 183 29 0 chr15 57417499 57417603 -43962918 + AluSp SINE Alu 1 107 -206 2041 162 63 68 chr15 57417603 57418189 -43962332 + L1MB8 LINE L1 5595 6177 -1 2368 80 7 0 chr15 57418562 57418864 -43961657 - AluSp SINE Alu -9 304 1 680 254 78 41 chr15 57418957 57419201 -43961320 - MIR SINE MIR -2 260 8 1069 243 36 26 chr15 57419256 57419561 -43960960 - MLT1A2 LTR MaLR -4 370 63 488 289 44 50 chr15 57419667 57419847 -43960674 + MIR3 SINE MIR 26 204 -4 2492 87 0 0 chr15 57420147 57420457 -43960064 + AluSg SINE Alu 1 310 0 180 270 34 67 chr15 57420682 57420771 -43959750 + L2 LINE L2 2772 2857 -457 1725 138 72 18 chr15 57420875 57421151 -43959370 + AluSx SINE Alu 1 291 -21 1959 152 96 51 chr15 57421219 57421707 -43958814 + LTR54 LTR ERV1 1 510 0 536 235 33 44 chr15 57422114 57422297 -43958224 - MIR SINE MIR -10 252 72 181 250 19 19 chr15 57424886 57424938 -43955583 - L2 LINE L2 0 3313 3262 348 292 58 98 chr15 57425964 57426241 -43954280 - L1ME4a LINE L1 -158 5963 5698 299 223 97 10 chr15 57426243 57426346 -43954175 - L1ME4a LINE L1 -452 5669 5558 670 187 8 15 chr15 57426700 57426834 -43953687 - FLAM_C SINE Alu 0 133 1 600 162 134 0 chr15 57426973 57427115 -43953406 + L1M4c LINE L1 2295 2455 -3929 246 126 0 0 chr15 57427147 57427195 -43953326 - Alu SINE Alu -265 36 1 259 233 270 5 chr15 57427195 57427384 -43953137 - L1MC/D LINE L1 -2008 5800 5562 1543 187 40 4 chr15 57427478 57427756 -43952765 + AluJo SINE Alu 3 290 -22 1694 148 4 11 chr15 57428080 57428358 -43952163 + AluJb SINE Alu 1 276 -36 183 114 0 0 chr15 57428358 57428393 -43952128 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 1597 199 18 3 chr15 57428430 57428712 -43951809 + AluJb SINE Alu 1 286 -26 676 203 0 16 chr15 57428835 57428963 -43951558 - FLAM_A SINE Alu -3 130 5 225 220 66 44 chr15 57429512 57429603 -43950918 - L1ME4a LINE L1 -33 6088 5996 319 181 9 124 chr15 57430722 57430827 -43949694 - MER20B DNA MER1_type -1 782 690 26 0 0 0 chr15 57430870 57430896 -43949625 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr15 57433092 57433127 -43947394 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr15 57433360 57433391 -43947130 + AT_rich Low_complexity Low_complexity 1 31 0 379 76 0 30 chr15 57434379 57434445 -43946076 + (CA)n Simple_repeat Simple_repeat 2 65 0 228 85 17 34 chr15 57435540 57435599 -43944922 + (CAAAAA)n Simple_repeat Simple_repeat 2 59 0 23 0 0 0 chr15 57436391 57436414 -43944107 + AT_rich Low_complexity Low_complexity 1 23 0 2113 115 3 10 chr15 57438233 57438537 -43941984 + AluSx SINE Alu 1 302 -10 200 272 25 49 chr15 57438631 57438712 -43941809 - MIR3 SINE MIR -115 93 15 224 232 0 0 chr15 57439309 57439365 -43941156 + A-rich Low_complexity Low_complexity 1 56 0 1796 153 0 20 chr15 57439705 57440000 -43940521 + AluJo SINE Alu 1 289 -23 696 286 43 17 chr15 57441811 57442042 -43938479 - MIR SINE MIR -10 252 16 30 43 0 43 chr15 57442408 57442450 -43938071 + AT_rich Low_complexity Low_complexity 1 40 -27 2081 119 3 0 chr15 57442450 57442735 -43937786 - AluSx SINE Alu -26 286 1 30 43 0 43 chr15 57442735 57442762 -43937759 + AT_rich Low_complexity Low_complexity 40 67 0 2057 117 7 0 chr15 57444250 57444556 -43935965 - AluSx SINE Alu 0 308 1 205 175 25 0 chr15 57444634 57444674 -43935847 - L2 LINE L2 -10 3303 3263 1917 123 4 7 chr15 57444720 57444996 -43935525 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr15 57445000 57445020 -43935501 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 216 219 0 24 chr15 57445035 57445076 -43935445 - MIR SINE MIR -195 67 28 968 222 82 16 chr15 57446589 57446832 -43933689 + MIR SINE MIR 4 262 0 1093 90 0 0 chr15 57447026 57447159 -43933362 + AluSq/x SINE Alu 1 133 -179 2127 102 14 14 chr15 57447165 57447460 -43933061 + AluSx SINE Alu 6 300 -12 247 155 24 143 chr15 57448644 57448728 -43931793 + MIR SINE MIR 30 103 -105 272 226 0 0 chr15 57448805 57448858 -43931663 - L3 LINE CR1 -5 1572 1520 772 281 48 43 chr15 57448897 57449244 -43931277 - MIR SINE MIR -1 261 13 576 295 134 34 chr15 57451035 57451333 -43929188 - MER102b DNA MER1_type -3 338 11 1654 172 0 21 chr15 57452753 57453043 -43927478 - AluJo SINE Alu -26 286 3 585 273 6 0 chr15 57456038 57456203 -43924318 - L1M4 LINE L1 -3140 3006 2841 951 136 136 151 chr15 57456219 57456345 -43924176 - AluJb SINE Alu -34 278 152 875 124 6 0 chr15 57456345 57456522 -43923999 + (TA)n Simple_repeat Simple_repeat 2 179 0 951 136 136 151 chr15 57456522 57456537 -43923984 - AluJb SINE Alu -160 152 138 1004 73 17 6 chr15 57456537 57456715 -43923806 + (TA)n Simple_repeat Simple_repeat 1 180 0 951 136 136 151 chr15 57456715 57456844 -43923677 - AluJb SINE Alu -174 138 11 816 263 103 35 chr15 57457095 57457581 -43922940 + L1ME4a LINE L1 5556 6074 -47 198 0 0 0 chr15 57457918 57457940 -43922581 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 233 308 146 0 chr15 57458346 57458476 -43922045 - L3b LINE CR1 -325 1258 1110 811 127 0 40 chr15 57458479 57458605 -43921916 - FLAM_A SINE Alu -9 133 13 2028 214 32 30 chr15 57458858 57459323 -43921198 + MER74A LTR ERVL 1 469 -89 1382 120 184 50 chr15 57459323 57459622 -43920899 + MER44D DNA MER2_type 1 609 0 2028 214 32 30 chr15 57459622 57459713 -43920808 + MER74A LTR ERVL 469 558 0 523 343 29 5 chr15 57459713 57459917 -43920604 - MIR SINE MIR -22 240 32 575 351 67 3 chr15 57460121 57460285 -43920236 + MARNA DNA Mariner 149 301 -285 270 0 0 0 chr15 57460285 57460315 -43920206 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 575 351 67 3 chr15 57460315 57460506 -43920015 + MARNA DNA Mariner 301 527 -59 2055 171 67 11 chr15 57461583 57462028 -43918493 + MER63C DNA MER1_type 45 514 -416 422 200 74 89 chr15 57462028 57462163 -43918358 - FLAM_A SINE Alu 0 133 1 824 168 15 0 chr15 57462166 57462297 -43918224 - AluJo/FLAM SINE Alu -169 133 1 1927 151 17 7 chr15 57462297 57462595 -43917926 - AluJo SINE Alu -11 301 1 376 213 0 0 chr15 57462598 57462659 -43917862 - AluJ/FLAM SINE Alu -241 61 1 * 1100 179 63 50 chr15 57462659 57463041 -43917480 + MER63C DNA MER1_type 505 928 -2 455 287 45 94 chr15 57465882 57466126 -43914395 + MIR SINE MIR 12 243 -19 201 276 197 0 chr15 57466177 57466253 -43914268 - L2 LINE L2 -9 3263 3173 638 314 57 30 chr15 57466525 57466891 -43913630 - L2 LINE L2 -559 2755 2380 946 159 0 20 chr15 57466923 57467074 -43913447 + AluJo SINE Alu 1 148 -164 1735 161 3 35 chr15 57467380 57467691 -43912830 - AluJo SINE Alu -11 301 1 249 327 53 35 chr15 57467771 57467884 -43912637 + L2 LINE L2 3133 3247 -25 768 264 111 5 chr15 57468036 57468252 -43912269 - MIR SINE MIR 0 262 24 250 303 34 25 chr15 57469443 57469562 -43910959 - 7SK RNA RNA -70 123 4 921 198 0 11 chr15 57469607 57469784 -43910737 - FRAM SINE Alu -1 175 1 241 350 50 0 chr15 57470543 57470643 -43909878 - MIR SINE MIR -111 151 47 22 35 0 0 chr15 57475089 57475118 -43905403 + AT_rich Low_complexity Low_complexity 1 29 0 257 235 56 112 chr15 57475474 57475653 -43904868 + MIR SINE MIR 94 262 0 199 327 182 0 chr15 57475656 57475766 -43904755 - L3b LINE CR1 -187 1396 1267 269 266 9 18 chr15 57476191 57476300 -43904221 + HAL1b LINE L1 1234 1341 -7 377 300 113 33 chr15 57476572 57476722 -43903799 + MER91A DNA MER1_type 1 162 -34 370 232 0 32 chr15 57477305 57477400 -43903121 - MIR SINE MIR -74 188 97 224 238 126 97 chr15 57477548 57477738 -43902783 + MIR SINE MIR 19 216 -46 243 0 0 0 chr15 57478330 57478357 -43902164 + (CA)n Simple_repeat Simple_repeat 1 27 0 373 175 36 26 chr15 57480977 57481317 -43899204 + (CA)n Simple_repeat Simple_repeat 1 343 0 371 190 33 54 chr15 57481337 57481521 -43899000 + (CA)n Simple_repeat Simple_repeat 1 180 0 379 192 39 37 chr15 57481541 57481898 -43898623 + (CA)n Simple_repeat Simple_repeat 1 358 0 294 135 48 40 chr15 57481991 57482117 -43898404 + (CA)n Simple_repeat Simple_repeat 1 127 0 663 216 165 16 chr15 57482405 57482599 -43897922 + MIR SINE MIR 39 261 -1 1863 131 0 11 chr15 57482612 57482886 -43897635 - AluJb SINE Alu -17 295 25 271 269 66 71 chr15 57484223 57484420 -43896101 + MARNA DNA Mariner 358 553 -33 696 289 76 55 chr15 57486357 57486457 -43894064 + MARNA DNA Mariner 133 229 -357 2223 100 3 10 chr15 57486457 57486758 -43893763 - AluSx SINE Alu -13 299 1 696 289 76 55 chr15 57486758 57487079 -43893442 + MARNA DNA Mariner 229 563 -23 2215 56 45 0 chr15 57487770 57488060 -43892461 - AluY SINE Alu 0 302 1 2198 109 0 0 chr15 57489146 57489427 -43891094 + AluSg1 SINE Alu 1 281 -28 244 0 0 0 chr15 57489427 57489454 -43891067 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 343 294 68 0 chr15 57490849 57490981 -43889540 - MIR3 SINE MIR -9 199 58 391 253 102 42 chr15 57491541 57491707 -43888814 + L2 LINE L2 3120 3295 -18 756 269 31 18 chr15 57492057 57492284 -43888237 + MIR SINE MIR 29 258 -4 313 270 9 90 chr15 57492602 57492682 -43887839 + MIR SINE MIR 1 68 -140 1184 194 125 109 chr15 57492682 57493234 -43887287 + MER34B LTR ERV1 2 562 -3 313 270 9 90 chr15 57493234 57493280 -43887241 + MIR SINE MIR 68 116 -92 23 0 0 0 chr15 57497122 57497145 -43883376 + AT_rich Low_complexity Low_complexity 1 23 0 21 104 0 0 chr15 57498373 57498450 -43882071 + AT_rich Low_complexity Low_complexity 1 77 0 1319 160 51 68 chr15 57499755 57500049 -43880472 + AluJb SINE Alu 2 290 -12 233 205 68 77 chr15 57500162 57500279 -43880242 - L1ME4a LINE L1 -2 6119 6004 2807 16 0 0 chr15 57500412 57500721 -43879800 - AluY SINE Alu -2 309 1 1827 130 42 88 chr15 57501051 57501283 -43879238 + LTR23 LTR ERV1 1 242 -225 2205 72 41 10 chr15 57501283 57501575 -43878946 - AluSq SINE Alu -12 301 1 1827 130 42 88 chr15 57501575 57501587 -43878934 + LTR23 LTR ERV1 242 253 -214 1749 136 0 124 chr15 57501587 57501785 -43878736 - AluJo SINE Alu -13 289 147 2109 87 0 37 chr15 57501785 57502084 -43878437 - AluSc SINE Alu -21 288 1 1749 136 0 124 chr15 57502084 57502215 -43878306 - AluJo SINE Alu -155 147 1 1827 130 42 88 chr15 57502215 57502425 -43878096 + LTR23 LTR ERV1 253 467 0 268 231 167 26 chr15 57502860 57502938 -43877583 + MIR SINE MIR 59 147 -115 521 283 61 24 chr15 57503472 57503684 -43876837 + MIR SINE MIR 31 250 -12 30 75 0 0 chr15 57506784 57506837 -43873684 + GC_rich Low_complexity Low_complexity 1 53 0 35 24 0 0 chr15 57506869 57506911 -43873610 + GC_rich Low_complexity Low_complexity 1 42 0 221 224 0 0 chr15 57508178 57508227 -43872294 + (CA)n Simple_repeat Simple_repeat 2 50 0 333 0 0 0 chr15 57508831 57508868 -43871653 + (CA)n Simple_repeat Simple_repeat 2 38 0 741 79 0 0 chr15 57508870 57508971 -43871550 + (TA)n Simple_repeat Simple_repeat 1 101 0 395 316 29 35 chr15 57508993 57509164 -43871357 + MIR3 SINE MIR 30 199 -9 287 267 193 27 chr15 57509288 57509438 -43871083 + MIR SINE MIR 26 200 -62 2889 157 2 5 chr15 57509654 57510088 -43870433 + Tigger2a DNA MER2_type 2 434 0 269 349 47 31 chr15 57510215 57510344 -43870177 - L2 LINE L2 -6 3266 3136 180 333 67 42 chr15 57510467 57510587 -43869934 - L2 LINE L2 -221 3051 2929 2356 105 0 0 chr15 57510587 57510893 -43869628 + AluSx SINE Alu 1 306 -6 656 308 54 14 chr15 57512195 57512416 -43868105 - MIR SINE MIR -25 237 8 24 53 0 0 chr15 57513213 57513251 -43867270 + AT_rich Low_complexity Low_complexity 1 38 0 2632 213 62 22 chr15 57514092 57514769 -43865752 - L1ME1 LINE L1 -4 6162 5459 2933 206 37 35 chr15 57514772 57515171 -43865350 + MER82 DNA MER2_type 3 405 -248 2349 73 17 10 chr15 57515171 57515473 -43865048 + AluSx SINE Alu 1 304 -8 2933 206 37 35 chr15 57515473 57515723 -43864798 + MER82 DNA MER2_type 405 653 0 422 310 35 69 chr15 57515819 57515993 -43864528 + L2 LINE L2 3105 3272 0 420 304 68 32 chr15 57516022 57516242 -43864279 + MIR SINE MIR 20 247 -15 199 210 247 37 chr15 57517526 57517607 -43862914 + L2 LINE L2 3175 3272 0 223 254 0 16 chr15 57518150 57518213 -43862308 + GA-rich Low_complexity Low_complexity 1 62 0 345 233 108 25 chr15 57519740 57519860 -43860661 - MIR SINE MIR -58 150 21 284 0 0 27 chr15 57521517 57521554 -43858967 + (CA)n Simple_repeat Simple_repeat 1 36 0 270 0 0 0 chr15 57522878 57522908 -43857613 + (A)n Simple_repeat Simple_repeat 1 30 0 200 138 0 0 chr15 57522944 57522973 -43857548 + L2 LINE L2 3267 3295 -18 216 0 0 0 chr15 57523980 57524004 -43856517 + (T)n Simple_repeat Simple_repeat 1 24 0 361 301 92 52 chr15 57524696 57524928 -43855593 + MIR SINE MIR 13 250 -12 405 0 0 0 chr15 57525015 57525060 -43855461 + (TG)n Simple_repeat Simple_repeat 2 46 0 407 256 76 104 chr15 57525953 57526203 -43854318 + MIR SINE MIR 2 244 -18 390 289 37 44 chr15 57528447 57528582 -43851939 + L2 LINE L2 3139 3272 0 201 121 0 0 chr15 57528946 57528979 -43851542 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 420 55 0 0 chr15 57528974 57529029 -43851492 + (GA)n Simple_repeat Simple_repeat 2 56 0 713 225 7 0 chr15 57531640 57531782 -43848739 + MIR SINE MIR 97 239 -23 201 211 0 0 chr15 57531834 57531872 -43848649 + L2 LINE L2 3256 3293 -20 24 0 0 0 chr15 57532517 57532541 -43847980 + AT_rich Low_complexity Low_complexity 1 24 0 203 347 14 0 chr15 57532598 57532670 -43847851 - L2 LINE L2 0 3272 3200 891 225 17 92 chr15 57532945 57533084 -43847437 + L1MC4 LINE L1 7736 7884 -158 2229 112 0 0 chr15 57533084 57533380 -43847141 + AluSq SINE Alu 1 296 -17 891 225 17 92 chr15 57533380 57533588 -43846933 + L1MC4 LINE L1 7884 8041 -1 1768 150 6 54 chr15 57533650 57533964 -43846557 + AluJb SINE Alu 1 299 -13 2076 132 0 0 chr15 57534047 57534335 -43846186 - AluSx SINE Alu -24 288 1 506 309 164 5 chr15 57534754 57534974 -43845547 - MIR SINE MIR -6 256 2 21 0 0 0 chr15 57535105 57535126 -43845395 + AT_rich Low_complexity Low_complexity 1 21 0 188 222 0 16 chr15 57535530 57535593 -43844928 + CT-rich Low_complexity Low_complexity 3 64 0 235 153 51 0 chr15 57535776 57535835 -43844686 + LTR66 LTR ERVL 380 441 -169 257 150 12 38 chr15 57535839 57535919 -43844602 + (TA)n Simple_repeat Simple_repeat 1 78 0 252 0 0 0 chr15 57536547 57536575 -43843946 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1340 284 30 5 chr15 57536662 57537063 -43843458 + L1MC4a LINE L1 5496 5906 -1902 276 30 0 0 chr15 57537725 57537758 -43842763 + (TTG)n Simple_repeat Simple_repeat 1 33 0 290 319 42 0 chr15 57537898 57538017 -43842504 - MIR SINE MIR -34 228 105 274 258 23 70 chr15 57538464 57538592 -43841929 - L2 LINE L2 -1 3312 3191 326 348 25 103 chr15 57539021 57539303 -43841218 + L2 LINE L2 2927 3186 -86 22 0 0 0 chr15 57539303 57539325 -43841196 + AT_rich Low_complexity Low_complexity 1 22 0 1586 196 119 5 chr15 57539325 57539702 -43840819 - L1MD3 LINE L1 -2 7993 7574 1004 217 9 13 chr15 57539702 57539928 -43840593 - AluJo SINE Alu -1 311 87 218 263 25 50 chr15 57539945 57540025 -43840496 + L2 LINE L2 3195 3272 0 362 235 154 51 chr15 57540377 57540528 -43839993 + L2 LINE L2 2986 3171 -142 1736 99 0 0 chr15 57540528 57540749 -43839772 - AluSc SINE Alu -5 304 84 362 235 154 51 chr15 57540749 57540831 -43839690 + L2 LINE L2 3171 3243 -70 255 273 50 30 chr15 57542132 57542231 -43838290 - MIR3 SINE MIR -53 155 55 2468 70 6 10 chr15 57542232 57542544 -43837977 - AluSx SINE Alu -1 311 1 2296 72 3 7 chr15 57543467 57543759 -43836762 - AluY SINE Alu -20 291 1 471 108 0 14 chr15 57543804 57543878 -43836643 - MER53 DNA DNA -1 188 116 * 532 117 175 0 chr15 57543816 57543919 -43836602 + MER53 DNA DNA 23 143 -46 23 0 0 0 chr15 57543944 57543967 -43836554 + AT_rich Low_complexity Low_complexity 1 23 0 195 42 0 0 chr15 57544223 57544247 -43836274 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr15 57544654 57544675 -43835846 + AT_rich Low_complexity Low_complexity 1 21 0 2284 97 0 0 chr15 57545752 57546052 -43834469 - AluSc SINE Alu -9 300 1 365 96 0 0 chr15 57547742 57547794 -43832727 + MADE1 DNA Mariner 1 52 -28 1082 262 94 37 chr15 57547991 57548533 -43831988 - L1ME4a LINE L1 -10 6111 5539 21 36 0 0 chr15 57548893 57548921 -43831600 + AT_rich Low_complexity Low_complexity 1 28 0 201 74 0 0 chr15 57549156 57549183 -43831338 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 229 214 34 34 chr15 57549658 57549747 -43830774 + L1ME4a LINE L1 5995 6083 -38 555 286 116 5 chr15 57551357 57551556 -43828965 + MIR SINE MIR 34 254 -8 1210 314 91 45 chr15 57551617 57552293 -43828228 + L2 LINE L2 2499 3229 -84 1838 158 7 10 chr15 57552293 57552596 -43827925 - AluJb SINE Alu -8 304 3 1210 314 91 45 chr15 57552596 57552681 -43827840 + L2 LINE L2 3229 3309 -4 203 319 17 59 chr15 57552672 57552761 -43827760 + L3b LINE CR1 1465 1549 -34 * 2332 98 0 3 chr15 57552761 57553057 -43827464 - AluSx SINE Alu -17 295 1 203 319 17 59 chr15 57553057 57553086 -43827435 + L3b LINE CR1 1549 1578 -5 532 337 151 26 chr15 57553381 57553838 -43826683 + L3 LINE CR1 940 1453 -124 1377 191 66 11 chr15 57553960 57554232 -43826289 + AluJo SINE Alu 7 293 -19 1629 154 59 11 chr15 57554236 57554509 -43826012 + AluSx SINE Alu 1 286 -26 192 77 0 0 chr15 57554512 57554538 -43825983 + (CATA)n Simple_repeat Simple_repeat 2 27 0 230 362 19 0 chr15 57556566 57556671 -43823850 + GA-rich Low_complexity Low_complexity 3 109 0 1755 100 116 4 chr15 57556765 57557024 -43823497 - AluSx SINE Alu -12 300 13 23 0 0 0 chr15 57557141 57557164 -43823357 + AT_rich Low_complexity Low_complexity 1 23 0 222 254 34 0 chr15 57557188 57557247 -43823274 + (CATA)n Simple_repeat Simple_repeat 1 61 0 344 363 22 7 chr15 57557578 57557713 -43822808 + L2 LINE L2 2954 3090 -182 256 228 89 44 chr15 57558108 57558252 -43822269 + MIR SINE MIR 34 192 -64 530 283 50 11 chr15 57562183 57562363 -43818158 - MIR SINE MIR -72 190 4 328 253 67 14 chr15 57563497 57563622 -43816899 + MIR SINE MIR 20 142 -66 560 298 95 44 chr15 57563648 57563900 -43816621 + L3 LINE CR1 1312 1576 -1 294 95 0 0 chr15 57564635 57564677 -43815844 + (TG)n Simple_repeat Simple_repeat 2 43 0 338 289 87 10 chr15 57564927 57565031 -43815490 - MIR SINE MIR -108 154 43 183 80 0 0 chr15 57565749 57565774 -43814747 + (CAAG)n Simple_repeat Simple_repeat 2 26 0 2334 168 59 30 chr15 57565891 57566362 -43814159 + MLT1D LTR MaLR 21 505 0 207 0 0 0 chr15 57566514 57566537 -43813984 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 196 318 0 16 chr15 57566881 57566944 -43813577 + L2 LINE L2 3249 3310 -3 321 295 134 7 chr15 57567483 57567632 -43812889 - MIR3 SINE MIR -6 202 35 227 235 29 44 chr15 57567704 57567772 -43812749 + LTR11 LTR ERV 412 478 -206 191 170 0 38 chr15 57568564 57568617 -43811904 + CT-rich Low_complexity Low_complexity 6 56 0 1941 119 91 0 chr15 57569414 57569699 -43810822 - AluSx SINE Alu -1 311 1 22 35 0 0 chr15 57569990 57570019 -43810502 + AT_rich Low_complexity Low_complexity 1 29 0 572 261 48 48 chr15 57571127 57571461 -43809060 - L1MC5 LINE L1 -77 7884 7551 1000 289 60 26 chr15 57574174 57574589 -43805932 + LTR16A LTR ERVL 16 444 -6 2074 138 3 0 chr15 57574801 57575099 -43805422 - AluSq SINE Alu -14 299 1 21 0 0 0 chr15 57576105 57576126 -43804395 + AT_rich Low_complexity Low_complexity 1 21 0 1924 128 62 0 chr15 57577031 57577320 -43803201 - AluSq SINE Alu -6 307 1 1546 172 3 60 chr15 57577513 57577832 -43802689 - AluJo SINE Alu -11 301 1 218 323 107 45 chr15 57577919 57578266 -43802255 - L2 LINE L2 -176 3096 2725 1860 166 3 13 chr15 57578957 57579270 -43801251 - AluJo SINE Alu -2 310 1 24 0 0 0 chr15 57579285 57579309 -43801212 + AT_rich Low_complexity Low_complexity 1 24 0 294 50 0 0 chr15 57580683 57580723 -43799798 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 367 20 82 0 chr15 57581099 57581148 -43799373 - MADE1 DNA Mariner 0 80 28 1995 153 0 0 chr15 57581546 57581841 -43798680 - AluSx SINE Alu -17 295 1 270 0 0 0 chr15 57582399 57582429 -43798092 + (TA)n Simple_repeat Simple_repeat 2 31 0 906 110 0 8 chr15 57582827 57582945 -43797576 + AluJo/FLAM SINE Alu 1 117 -185 995 94 0 0 chr15 57582948 57583075 -43797446 - AluSg/x SINE Alu -16 294 168 254 273 77 82 chr15 57584759 57584953 -43795568 - L2 LINE L2 -362 2952 2760 420 321 75 25 chr15 57585109 57585349 -43795172 + MER102a DNA MER1_type 71 322 -8 1949 137 3 13 chr15 57585377 57585705 -43794816 - AluSx SINE Alu 0 325 1 538 168 37 10 chr15 57585960 57586121 -43794400 - MER20 DNA MER1_type 0 219 1 1332 160 38 53 chr15 57587173 57587436 -43793085 + AluJo SINE Alu 47 305 -7 1661 175 21 3 chr15 57588330 57588485 -43792036 - AluJb SINE Alu -21 291 127 213 39 0 0 chr15 57588485 57588511 -43792010 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1661 175 21 3 chr15 57588511 57588641 -43791880 - AluJb SINE Alu -185 127 1 506 275 68 27 chr15 57588752 57588930 -43791591 + MIR3 SINE MIR 6 190 -18 342 292 156 0 chr15 57589584 57589738 -43790783 + MIR3 SINE MIR 20 197 -11 261 214 135 34 chr15 57590592 57590681 -43789840 - MIR SINE MIR -21 241 144 527 284 32 56 chr15 57591713 57591963 -43788558 + L2 LINE L2 3006 3249 -23 443 283 151 8 chr15 57592113 57592323 -43788198 + MIR SINE MIR 15 254 -8 719 267 40 53 chr15 57592627 57592874 -43787647 - MIR SINE MIR -12 250 7 332 206 176 0 chr15 57593563 57593665 -43786856 - L1ME3A LINE L1 -5 6165 6046 6767 194 36 23 chr15 57595299 57595353 -43785168 - Charlie1a DNA MER1_type -1311 1450 1398 2424 93 0 0 chr15 57595353 57595654 -43784867 + AluSx SINE Alu 1 301 -11 6767 194 36 23 chr15 57595654 57596757 -43783764 - Charlie1a DNA MER1_type -1363 1398 268 2405 74 0 13 chr15 57596757 57597056 -43783465 - AluY SINE Alu -14 297 3 6767 194 36 23 chr15 57597056 57597327 -43783194 - Charlie1a DNA MER1_type -2493 268 2 21 0 0 0 chr15 57600144 57600165 -43780356 + AT_rich Low_complexity Low_complexity 1 21 0 347 316 115 0 chr15 57600382 57600521 -43780000 - MIR3 SINE MIR -11 197 43 345 331 13 53 chr15 57600636 57600787 -43779734 + MER5B DNA MER1_type 29 173 -5 250 309 60 60 chr15 57600914 57601063 -43779458 + L2 LINE L2 3127 3275 -38 255 296 41 10 chr15 57601189 57601287 -43779234 + L2 LINE L2 3190 3290 -23 291 251 73 84 chr15 57601879 57602058 -43778463 + MER5B DNA MER1_type 1 177 -1 462 224 78 56 chr15 57602113 57602292 -43778229 + MER5A DNA MER1_type 7 189 0 196 189 81 0 chr15 57602620 57602657 -43777864 + L2 LINE L2 3265 3304 -9 858 370 71 6 chr15 57604283 57604452 -43776069 + L3 LINE CR1 1054 1211 -366 243 88 0 0 chr15 57604452 57604486 -43776035 + (TG)n Simple_repeat Simple_repeat 2 35 0 858 370 71 6 chr15 57604486 57604795 -43775726 + L3 LINE CR1 1211 1563 -14 208 162 189 27 chr15 57605515 57605589 -43774932 + MIR SINE MIR 106 191 -71 435 38 0 0 chr15 57606438 57606491 -43774030 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 330 87 0 0 chr15 57608164 57608210 -43772311 + (TC)n Simple_repeat Simple_repeat 1 46 0 24 0 0 0 chr15 57609298 57609322 -43771199 + GC_rich Low_complexity Low_complexity 1 24 0 30 59 0 0 chr15 57610338 57610389 -43770132 + GC_rich Low_complexity Low_complexity 1 51 0 242 210 16 0 chr15 57610474 57610536 -43769985 + (CCG)n Simple_repeat Simple_repeat 2 64 0 1563 91 5 0 chr15 57610785 57610984 -43769537 - AluSx SINE Alu -112 200 1 817 164 90 53 chr15 57610984 57611173 -43769348 + AluJo SINE Alu 101 296 -16 661 264 156 0 chr15 57611413 57611625 -43768896 + MIR SINE MIR 18 262 0 381 309 50 70 chr15 57611664 57611865 -43768656 + MIR SINE MIR 35 231 -31 260 277 0 0 chr15 57611890 57611955 -43768566 + (CTA)n Simple_repeat Simple_repeat 2 66 0 212 100 25 0 chr15 57616379 57616419 -43764102 + (CAA)n Simple_repeat Simple_repeat 3 43 0 195 146 0 0 chr15 57616639 57616680 -43763841 + (T)n Simple_repeat Simple_repeat 1 41 0 1997 77 0 18 chr15 57618866 57619213 -43761308 - AluY SINE Alu 0 342 1 36 0 0 0 chr15 57620073 57620109 -43760412 + AT_rich Low_complexity Low_complexity 1 36 0 212 83 83 0 chr15 57621192 57621228 -43759293 + T-rich Low_complexity Low_complexity 2 40 0 424 220 0 11 chr15 57621579 57621670 -43758851 + MER97c DNA MER1_type? 82 171 -919 237 233 0 58 chr15 57622241 57622344 -43758177 - L1M LINE L1 -2443 5365 5269 33 73 0 0 chr15 57622603 57622671 -43757850 + AT_rich Low_complexity Low_complexity 1 68 0 231 345 56 49 chr15 57624007 57624149 -43756372 + L2 LINE L2 2875 3017 -255 466 289 57 6 chr15 57624221 57624380 -43756141 + MER91A DNA MER1_type 6 172 -24 245 286 57 67 chr15 57624506 57624611 -43755910 + L2 LINE L2 3169 3272 0 549 292 62 0 chr15 57625384 57625562 -43754959 + MIR SINE MIR 3 191 -71 2281 77 0 20 chr15 57625564 57625864 -43754657 - AluSx SINE Alu -18 294 1 187 309 144 0 chr15 57625977 57626074 -43754447 + MIR SINE MIR 146 256 -6 333 0 0 0 chr15 57626459 57626496 -43754025 + (CA)n Simple_repeat Simple_repeat 2 38 0 221 136 0 23 chr15 57627192 57627236 -43753285 + (GAAA)n Simple_repeat Simple_repeat 1 43 0 249 263 90 83 chr15 57628037 57628193 -43752328 - L2 LINE L2 -1506 1808 1652 279 0 0 0 chr15 57629085 57629116 -43751405 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 366 136 8 6 chr15 57629833 57629954 -43750567 + MER53 DNA DNA 1 188 -1 268 227 13 0 chr15 57630351 57630409 -43750112 - MIR SINE MIR -56 152 91 412 294 27 59 chr15 57631171 57631358 -43749163 + MIR SINE MIR 32 212 -50 777 175 0 36 chr15 57631664 57631801 -43748720 + FLAM_A SINE Alu 1 132 -1 385 248 9 44 chr15 57632101 57632183 -43748338 + MIR3 SINE MIR 76 154 -54 1621 194 3 3 chr15 57632183 57632477 -43748044 - AluJo SINE Alu -18 294 1 385 248 9 44 chr15 57632477 57632507 -43748014 + MIR3 SINE MIR 154 184 -24 285 29 0 0 chr15 57632808 57632842 -43747679 + (CA)n Simple_repeat Simple_repeat 2 35 0 2153 111 0 10 chr15 57633500 57633798 -43746723 + AluSg SINE Alu 1 295 -15 301 226 24 36 chr15 57634058 57634142 -43746379 + MIR SINE MIR 67 149 -113 279 351 0 0 chr15 57638754 57638828 -43741693 + L2 LINE L2 3158 3231 -41 287 265 27 52 chr15 57639593 57639749 -43740772 + MIR SINE MIR 26 143 -65 8539 111 9 6 chr15 57639798 57641055 -43739466 - L1P LINE L1 -1381 4765 3505 628 237 56 28 chr15 57641125 57641340 -43739181 - L1MC5 LINE L1 -35 7926 7706 769 306 140 11 chr15 57642421 57642964 -43737557 - L2 LINE L2 -6 3307 2684 225 361 62 7 chr15 57643086 57643230 -43737291 + MIR3 SINE MIR 51 202 -6 687 271 78 48 chr15 57643259 57643714 -43736807 - MLT1J LTR MaLR 0 446 15 946 225 54 56 chr15 57643794 57644363 -43736158 - MLT1C LTR MaLR 0 467 1 463 299 43 12 chr15 57644671 57644835 -43735686 - MIR SINE MIR -74 188 20 23 68 0 0 chr15 57645434 57645478 -43735043 + AT_rich Low_complexity Low_complexity 1 44 0 358 250 0 9 chr15 57645490 57645598 -43734923 - L1ME4a LINE L1 -53 6068 5962 505 222 37 0 chr15 57645903 57646011 -43734510 - MIR SINE MIR -60 148 37 1721 139 0 15 chr15 57646098 57646365 -43734156 - AluSx SINE Alu -11 301 39 2494 46 0 0 chr15 57647736 57648078 -43732443 - AluY SINE Alu 0 342 1 1630 101 18 0 chr15 57648641 57648859 -43731662 + AluSg/x SINE Alu 87 308 -4 286 321 197 5 chr15 57649652 57649845 -43730676 - MIR SINE MIR -7 255 26 2839 130 122 17 chr15 57649860 57650337 -43730184 + MER1A DNA MER1_type 1 527 0 2289 95 3 7 chr15 57650622 57650918 -43729603 + AluSp SINE Alu 1 295 -18 240 272 83 41 chr15 57651331 57651500 -43729021 - MIR3 SINE MIR -30 178 3 230 291 76 71 chr15 57652628 57652838 -43727683 + Charlie8 DNA MER1_type 49 259 -2158 305 280 34 17 chr15 57654063 57654181 -43726340 + MIR SINE MIR 40 159 -103 2192 113 0 17 chr15 57654474 57654774 -43725747 - AluSx SINE Alu -17 295 1 2264 112 3 0 chr15 57654776 57655080 -43725441 - AluSx SINE Alu -7 305 1 270 284 83 9 chr15 57655307 57655416 -43725105 - MIR SINE MIR -61 147 31 538 247 146 0 chr15 57656444 57656602 -43723919 - MER5A DNA MER1_type 0 189 9 1449 135 82 4 chr15 57656927 57657172 -43723349 + MER21A LTR ERV1 1 264 -667 3065 172 61 11 chr15 57657177 57657705 -43722816 + MER21A LTR ERV1 376 929 -2 201 286 95 0 chr15 57657711 57657795 -43722726 + MIR SINE MIR 157 248 -14 209 122 20 61 chr15 57658036 57658085 -43722436 - L2 LINE L2 -2 3270 3224 1963 130 21 0 chr15 57658204 57658489 -43722032 - AluSx SINE Alu -1 311 21 205 86 29 0 chr15 57659439 57659474 -43721047 + (TG)n Simple_repeat Simple_repeat 1 36 0 617 245 47 82 chr15 57659537 57659880 -43720641 + L1MC5 LINE L1 7604 7934 -27 23 78 0 0 chr15 57663507 57663558 -43716963 + AT_rich Low_complexity Low_complexity 1 51 0 207 188 0 0 chr15 57664101 57664149 -43716372 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 246 313 40 20 chr15 57664158 57664257 -43716264 - L2 LINE L2 -10 3303 3203 671 256 92 0 chr15 57664678 57664873 -43715648 - MIR SINE MIR -10 252 40 1608 98 47 4 chr15 57665845 57666100 -43714421 - L1MA2 LINE L1 0 6304 6039 183 241 19 19 chr15 57666836 57666890 -43713631 - L2 LINE L2 -22 3291 3238 31 68 0 0 chr15 57669289 57669348 -43711173 + AT_rich Low_complexity Low_complexity 1 59 0 307 272 43 11 chr15 57669828 57669920 -43710601 + MIR SINE MIR 37 131 -77 982 104 31 31 chr15 57671312 57671475 -43709046 - L1PA13 LINE L1 -2 6161 5999 329 340 6 0 chr15 57673098 57673260 -43707261 + (CA)n Simple_repeat Simple_repeat 2 164 0 408 40 0 0 chr15 57674331 57674381 -43706140 + (GA)n Simple_repeat Simple_repeat 2 51 0 212 294 12 12 chr15 57674396 57674481 -43706040 + GA-rich Low_complexity Low_complexity 1 85 0 729 170 182 0 chr15 57674598 57674757 -43705764 + MER5A DNA MER1_type 1 188 -1 662 112 0 0 chr15 57677186 57677275 -43703246 + 5S rRNA rRNA 2 90 -31 1043 162 22 5 chr15 57677838 57678023 -43702498 + MER5A DNA MER1_type 2 189 0 753 184 54 84 chr15 57678877 57679116 -43701405 + ORSL DNA AcHobo 1 232 -43 1917 180 88 28 chr15 57679123 57679556 -43700965 - MLT1C LTR MaLR -7 460 2 1811 164 10 3 chr15 57679707 57679999 -43700522 + AluJb SINE Alu 1 294 -18 201 180 0 0 chr15 57682507 57682557 -43697964 + (TA)n Simple_repeat Simple_repeat 2 51 0 3034 153 31 31 chr15 57682774 57683382 -43697139 - L1MA8 LINE L1 -2 6289 5682 2257 107 24 0 chr15 57683433 57683731 -43696790 - AluSx SINE Alu -7 305 1 372 282 8 8 chr15 57684891 57685015 -43695506 + MIR SINE MIR 35 158 -104 387 273 12 13 chr15 57689396 57689516 -43691005 - MER5A DNA MER1_type -3 178 57 1871 163 0 7 chr15 57690162 57690451 -43690070 + AluJb SINE Alu 1 287 -25 710 268 73 0 chr15 57690455 57690660 -43689861 - MIR SINE MIR -4 258 39 217 191 0 21 chr15 57691808 57691855 -43688666 + (TAA)n Simple_repeat Simple_repeat 3 48 0 365 285 75 70 chr15 57691858 57692086 -43688435 - MIR SINE MIR -21 241 13 272 270 119 22 chr15 57692095 57692255 -43688266 - MIR SINE MIR -54 208 36 216 283 67 67 chr15 57693565 57693685 -43686836 + MIR3 SINE MIR 15 134 -74 337 240 124 31 chr15 57693756 57693885 -43686636 - L2 LINE L2 0 3313 3173 349 346 57 9 chr15 57693897 57694108 -43686413 - MIR SINE MIR -19 243 23 213 271 103 56 chr15 57694289 57694396 -43686125 - MIR SINE MIR -64 198 87 426 245 99 40 chr15 57695105 57695256 -43685265 - MIR3 SINE MIR -12 196 37 5784 26 0 1 chr15 57695399 57696059 -43684462 - L1PA4 LINE L1 0 6155 5497 236 309 12 12 chr15 57696068 57696152 -43684369 + L2 LINE L2 3187 3270 -2 228 67 0 0 chr15 57696316 57696346 -43684175 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 377 250 50 10 chr15 57696349 57696449 -43684072 - L2 LINE L2 -16 3297 3194 332 303 10 0 chr15 57697869 57697968 -43682553 + L2 LINE L2 2923 3022 -291 260 271 14 0 chr15 57698080 57698150 -43682371 + L2 LINE L2 3242 3312 -1 219 315 8 8 chr15 57698169 57698296 -43682225 + L2 LINE L2 2068 2194 -1120 218 264 121 22 chr15 57698492 57698583 -43681938 + L2 LINE L2 2215 2314 -1000 211 259 148 0 chr15 57698580 57698634 -43681887 + L2 LINE L2 3190 3251 -21 * 383 266 39 39 chr15 57699331 57699459 -43681062 - MIR SINE MIR -65 143 16 246 81 0 0 chr15 57701264 57701301 -43679220 + (CA)n Simple_repeat Simple_repeat 2 38 0 258 290 0 0 chr15 57701333 57701402 -43679119 - MER116 DNA Mariner -11 69 1 295 59 20 20 chr15 57702948 57702999 -43677522 + (CA)n Simple_repeat Simple_repeat 2 52 0 261 0 0 0 chr15 57703482 57703511 -43677010 + (T)n Simple_repeat Simple_repeat 1 29 0 577 298 40 10 chr15 57704654 57704852 -43675669 + MIR3 SINE MIR 2 205 -3 23 54 0 0 chr15 57706744 57706781 -43673740 + AT_rich Low_complexity Low_complexity 1 37 0 597 328 31 0 chr15 57707389 57707581 -43672940 + Charlie8 DNA MER1_type 1 198 -2219 275 335 59 0 chr15 57707772 57707924 -43672597 - MIR SINE MIR -50 212 52 338 381 62 30 chr15 57708008 57708410 -43672111 + L2 LINE L2 2831 3245 -27 963 192 0 0 chr15 57711029 57711201 -43669320 - FAM SINE Alu -3 172 1 1126 144 5 0 chr15 57711305 57711492 -43669029 - MER53 DNA DNA -1 188 1 189 357 48 34 chr15 57711688 57711957 -43668564 + L2 LINE L2 3031 3303 -10 199 264 0 0 chr15 57712177 57712230 -43668291 + MIR SINE MIR 92 144 -118 27 0 0 0 chr15 57712445 57712472 -43668049 + AT_rich Low_complexity Low_complexity 1 27 0 1683 80 0 4 chr15 57712472 57712697 -43667824 - L1PA6 LINE L1 0 6154 5931 566 276 29 0 chr15 57713739 57713909 -43666612 - L1MC4 LINE L1 -111 7931 7757 195 326 95 0 chr15 57714033 57714128 -43666393 - MIR SINE MIR -57 151 48 581 268 51 65 chr15 57717216 57717492 -43663029 + L2 LINE L2 3042 3313 0 440 208 42 0 chr15 57717758 57717854 -43662667 + MIR SINE MIR 33 132 -76 243 0 0 0 chr15 57718638 57718665 -43661856 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 227 325 49 8 chr15 57719407 57719530 -43660991 - MIR SINE MIR -45 217 90 379 295 58 35 chr15 57720604 57720777 -43659744 + MER5B DNA MER1_type 2 178 0 214 333 49 0 chr15 57721156 57721237 -43659284 - L2 LINE L2 -16 3256 3172 564 322 5 0 chr15 57721295 57721494 -43659027 - MIR SINE MIR -1 261 62 2353 92 0 0 chr15 57722359 57722662 -43657859 + AluSc SINE Alu 1 303 -6 516 254 101 56 chr15 57723142 57723587 -43656934 + L1ME LINE L1 5374 5834 -317 738 134 63 0 chr15 57723783 57723925 -43656596 - L1MA8 LINE L1 -5 6286 6136 221 250 112 14 chr15 57725094 57725193 -43655328 + MIR SINE MIR 40 146 -66 197 369 28 28 chr15 57725971 57726147 -43654374 + L2 LINE L2 2788 2963 -351 217 286 151 25 chr15 57726298 57726417 -43654104 + L2 LINE L2 3180 3313 0 228 290 0 0 chr15 57726629 57726698 -43653823 + MIR SINE MIR 88 156 -106 191 328 16 0 chr15 57727999 57728063 -43652458 - L2 LINE L2 -22 3250 3186 454 296 80 65 chr15 57728291 57728615 -43651906 - L2 LINE L2 -7 3265 2937 246 232 214 9 chr15 57728615 57728727 -43651794 - L2 LINE L2 -1 3271 3137 190 236 18 0 chr15 57728755 57728810 -43651711 - L2 LINE L2 -286 2986 2931 327 165 38 51 chr15 57730004 57730083 -43650438 - MER69 DNA AcHobo 0 2526 2449 * 747 243 0 0 chr15 57730077 57730225 -43650296 - MER69 DNA AcHobo -2378 148 1 360 326 5 42 chr15 57730569 57730759 -43649762 - MER5A DNA MER1_type 0 189 7 275 201 147 71 chr15 57731529 57731675 -43648846 + MIR SINE MIR 13 175 -66 1938 262 73 46 chr15 57731746 57733264 -43647257 + L1ME LINE L1 43 1659 -4602 444 289 16 0 chr15 57733488 57733609 -43646912 + MIR3 SINE MIR 78 200 -8 275 205 36 116 chr15 57736278 57736390 -43644131 + MIR SINE MIR 86 188 -74 2345 164 29 56 chr15 57736878 57737396 -43643125 + L1MB4 LINE L1 5440 5943 -231 230 156 47 0 chr15 57737404 57737468 -43643053 + (TA)n Simple_repeat Simple_repeat 2 68 0 182 61 0 30 chr15 57737468 57737501 -43643020 + (TTA)n Simple_repeat Simple_repeat 2 33 0 903 198 121 0 chr15 57737505 57737712 -43642809 + L1MB4 LINE L1 5949 6180 0 219 36 0 0 chr15 57738628 57738656 -43641865 + (CA)n Simple_repeat Simple_repeat 2 29 0 375 290 35 41 chr15 57739064 57739209 -43641312 + MIR SINE MIR 8 151 -111 28 0 0 0 chr15 57739926 57739954 -43640567 + AT_rich Low_complexity Low_complexity 1 28 0 734 157 5 110 chr15 57740423 57740614 -43639907 - MER63B DNA MER1_type -265 171 1 190 370 76 66 chr15 57741106 57741395 -43639126 + L2 LINE L2 2976 3267 -5 219 314 9 9 chr15 57742352 57742457 -43638064 - MIR SINE MIR -63 145 41 207 313 68 25 chr15 57742525 57742688 -43637833 + MIR SINE MIR 21 190 -72 310 185 25 0 chr15 57742953 57743034 -43637487 + (TG)n Simple_repeat Simple_repeat 2 84 0 23 0 0 0 chr15 57743338 57743361 -43637160 + AT_rich Low_complexity Low_complexity 1 23 0 253 248 316 0 chr15 57743981 57744098 -43636423 + MIR3 SINE MIR 48 201 -7 2334 92 10 0 chr15 57744394 57744700 -43635821 + AluSp SINE Alu 1 309 -4 446 312 59 14 chr15 57744716 57744937 -43635584 - MIR SINE MIR -24 238 8 470 256 156 6 chr15 57745812 57746024 -43634497 + MIR SINE MIR 17 256 -6 284 347 104 14 chr15 57746104 57746248 -43634273 + MIR3 SINE MIR 29 185 -23 287 255 62 42 chr15 57746997 57747167 -43633354 - MIR SINE MIR -70 192 20 6754 164 29 2 chr15 57747289 57747706 -43632815 + L1PB1 LINE L1 3981 4385 -1766 252 0 0 0 chr15 57747706 57747734 -43632787 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6754 164 29 2 chr15 57747734 57749089 -43631432 + L1PB1 LINE L1 4385 5790 -361 26 50 0 0 chr15 57749090 57749130 -43631391 + AT_rich Low_complexity Low_complexity 1 40 0 2455 86 7 87 chr15 57749146 57749565 -43630956 + L1PB1 LINE L1 5767 6150 -1 3801 249 94 27 chr15 57749745 57751948 -43628573 - HAL1 LINE L1 -1 2506 8 580 284 53 0 chr15 57752439 57752608 -43627913 + MIR SINE MIR 14 191 -71 1734 172 0 20 chr15 57752614 57752911 -43627610 + AluJo SINE Alu 6 296 -16 183 167 0 0 chr15 57752963 57752999 -43627522 + L2 LINE L2 3221 3256 -16 261 236 82 36 chr15 57753546 57753656 -43626865 - MLT1J1 LTR MaLR -308 138 24 227 355 32 8 chr15 57754141 57754265 -43626256 - MIR SINE MIR -50 212 86 242 275 187 0 chr15 57754790 57754881 -43625640 + L2 LINE L2 3201 3308 -5 206 321 0 37 chr15 57755441 57755550 -43624971 + MIR SINE MIR 83 187 -75 22 0 0 0 chr15 57756182 57756204 -43624317 + AT_rich Low_complexity Low_complexity 1 22 0 264 107 0 89 chr15 57756259 57756428 -43624093 + (TA)n Simple_repeat Simple_repeat 1 154 0 295 141 0 73 chr15 57756463 57756929 -43623592 + (TATATG)n Simple_repeat Simple_repeat 1 431 0 845 25 0 2 chr15 57756947 57757091 -43623430 + L1PA4 LINE L1 6028 6169 0 653 263 5 5 chr15 57757116 57757325 -43623196 - L1M4 LINE L1 -3659 2487 2279 905 120 108 6 chr15 57757332 57757499 -43623022 - L1MA7 LINE L1 0 6291 6108 1021 129 25 6 chr15 57757499 57757662 -43622859 - Tigger1 DNA MER2_type -2 2416 2251 831 137 78 13 chr15 57757665 57757818 -43622703 - Tigger1 DNA MER2_type -2255 163 1 410 134 27 130 chr15 57757818 57758008 -43622513 - L1MA6 LINE L1 -175 6122 5953 206 205 0 0 chr15 57758197 57758236 -43622285 + L2 LINE L2 3271 3309 -4 606 88 0 0 chr15 57758511 57758591 -43621930 + MADE1 DNA Mariner 1 80 0 379 234 75 10 chr15 57758697 57758870 -43621651 - MIR SINE MIR -56 206 24 498 33 0 0 chr15 57760076 57760136 -43620385 + (CA)n Simple_repeat Simple_repeat 2 61 0 261 273 124 25 chr15 57761891 57762052 -43618469 + L2 LINE L2 3130 3306 -7 * 627 264 8 73 chr15 57762037 57762283 -43618238 - MIR SINE MIR -10 252 23 201 354 20 0 chr15 57762344 57762443 -43618078 - MIR3 SINE MIR -3 205 105 364 320 33 0 chr15 57762534 57762687 -43617834 - MIR3 SINE MIR -15 193 36 453 158 34 118 chr15 57763036 57763200 -43617321 + MER5B DNA MER1_type 21 164 -14 187 167 28 0 chr15 57763241 57763277 -43617244 + MER5A DNA MER1_type 39 75 -114 599 179 19 13 chr15 57763299 57763455 -43617066 + CT-rich Low_complexity Low_complexity 4 160 0 259 141 31 31 chr15 57763475 57763539 -43616982 + CT-rich Low_complexity Low_complexity 1 64 0 858 194 0 0 chr15 57763539 57763683 -43616838 - FRAM SINE Alu -25 151 8 289 288 98 44 chr15 57763699 57763904 -43616617 + L2 LINE L2 3098 3313 0 735 234 0 23 chr15 57764888 57765063 -43615458 + MIR SINE MIR 37 207 -55 223 286 52 0 chr15 57766050 57766127 -43614394 + MIR3 SINE MIR 127 207 -1 225 171 24 0 chr15 57766572 57766613 -43613908 + GA-rich Low_complexity Low_complexity 2 43 0 378 0 0 0 chr15 57767075 57767117 -43613404 + (TC)n Simple_repeat Simple_repeat 2 43 0 220 242 0 32 chr15 57770249 57770311 -43610210 + L2 LINE L2 3254 3313 0 24 32 0 0 chr15 57770482 57770513 -43610008 + AT_rich Low_complexity Low_complexity 1 31 0 831 231 131 3 chr15 57770534 57770816 -43609705 - L1ME4a LINE L1 -14 6107 5790 198 167 0 0 chr15 57771251 57771287 -43609234 + (TG)n Simple_repeat Simple_repeat 1 36 0 450 304 24 23 chr15 57772390 57772566 -43607955 + MLT1J LTR MaLR 5 222 -271 442 224 31 10 chr15 57772599 57772697 -43607824 - MER81 DNA DNA -11 103 4 334 284 108 54 chr15 57772765 57772913 -43607608 + MLT1J LTR MaLR 318 473 -38 2510 61 3 0 chr15 57773228 57773522 -43606999 - AluY SINE Alu -16 295 1 2177 112 0 0 chr15 57773527 57773813 -43606708 - AluSx SINE Alu -4 308 23 213 343 78 0 chr15 57774096 57774198 -43606323 + MIR3 SINE MIR 3 112 -96 201 267 116 12 chr15 57775891 57775977 -43604544 - MIR SINE MIR -50 212 118 974 116 0 0 chr15 57777357 57777486 -43603035 - FLAM_C SINE Alu -9 134 6 336 48 0 0 chr15 57779163 57779205 -43601316 + (CA)n Simple_repeat Simple_repeat 2 43 0 2286 66 0 33 chr15 57779205 57779508 -43601013 - AluY SINE Alu -18 293 1 201 157 59 20 chr15 57779508 57779548 -43600973 - L2 LINE L2 -6 3307 3261 329 64 0 0 chr15 57779726 57779773 -43600748 + MADE1 DNA Mariner 34 80 0 199 361 0 12 chr15 57779783 57779866 -43600655 - MIR SINE MIR -86 122 41 273 185 0 0 chr15 57781734 57781799 -43598722 + CT-rich Low_complexity Low_complexity 1 65 0 183 352 116 19 chr15 57782740 57782956 -43597565 - MIR SINE MIR -13 249 13 377 266 51 38 chr15 57783632 57783790 -43596731 - MIR3 SINE MIR -29 179 20 244 337 50 70 chr15 57784317 57784617 -43595904 + L2 LINE L2 2944 3237 -35 195 42 0 0 chr15 57784713 57784737 -43595784 + (TTG)n Simple_repeat Simple_repeat 2 25 0 201 39 0 0 chr15 57785339 57785365 -43595156 + (TG)n Simple_repeat Simple_repeat 2 27 0 348 256 61 55 chr15 57785870 57786034 -43594487 + MIR SINE MIR 56 220 -42 2353 77 3 0 chr15 57786058 57786357 -43594164 - AluY SINE Alu -11 300 1 206 176 0 0 chr15 57786412 57786446 -43594075 - MIR SINE MIR -85 123 90 1495 199 16 9 chr15 57787872 57788193 -43592328 + MER33 DNA MER1_type 2 324 0 185 208 0 0 chr15 57788471 57788519 -43592002 + L2 LINE L2 3012 3059 -254 2125 167 136 11 chr15 57788519 57788857 -43591664 + MLT1D LTR MaLR 1 410 -95 2208 141 123 5 chr15 57788857 57789240 -43591281 - MSTA LTR MaLR 0 428 1 2125 167 136 11 chr15 57789240 57789350 -43591171 + MLT1D LTR MaLR 410 505 0 438 258 6 55 chr15 57789463 57789626 -43590895 + L2 LINE L2 3158 3312 -1 667 204 74 49 chr15 57789928 57790090 -43590431 + MER63A DNA MER1_type 1 166 -44 489 281 106 15 chr15 57790721 57790920 -43589601 + MIR SINE MIR 35 251 -11 252 143 0 0 chr15 57792019 57792075 -43588446 + (TG)n Simple_repeat Simple_repeat 1 56 0 377 278 28 61 chr15 57792674 57792854 -43587667 + MIR SINE MIR 79 252 -10 252 286 29 67 chr15 57794067 57794251 -43586270 + MIR SINE MIR 15 190 -72 2183 92 7 0 chr15 57794298 57794601 -43585920 + AluSc SINE Alu 5 309 0 2072 97 14 7 chr15 57795923 57796227 -43584294 - AluSg SINE Alu 0 306 1 241 299 39 47 chr15 57796268 57796395 -43584126 + MER5A DNA MER1_type 52 177 -12 415 171 38 19 chr15 57798125 57798230 -43582291 - MIR3 SINE MIR -1 207 101 233 248 149 33 chr15 57798257 57798378 -43582143 + MIR SINE MIR 1 135 -127 297 0 0 0 chr15 57799005 57799038 -43581483 + (CA)n Simple_repeat Simple_repeat 2 34 0 357 146 0 203 chr15 57799653 57799776 -43580745 + MER5A DNA MER1_type 9 106 -83 780 176 69 25 chr15 57799776 57799935 -43580586 - FRAM SINE Alu -1 175 10 236 122 0 20 chr15 57799940 57800017 -43580504 - FLAM_A SINE Alu 0 160 85 244 250 0 42 chr15 57801067 57801139 -43579382 - L2 LINE L2 -3 3269 3201 226 227 15 15 chr15 57801669 57801735 -43578786 - MIR SINE MIR -38 224 159 708 167 9 0 chr15 57801851 57801965 -43578556 - FLAM_A SINE Alu -18 115 1 306 262 76 44 chr15 57803423 57803567 -43576954 - MIR SINE MIR -67 141 33 455 274 0 0 chr15 57803905 57804022 -43576499 + MIR SINE MIR 112 228 -34 2303 111 0 0 chr15 57804120 57804417 -43576104 - AluSg SINE Alu -13 297 1 487 261 76 6 chr15 57805503 57805660 -43574861 + MIR3 SINE MIR 39 206 -2 2081 143 84 10 chr15 57806268 57806659 -43573862 - L1MA4 LINE L1 -29 6271 5852 2264 201 88 117 chr15 57806682 57807133 -43573388 + MER21B LTR ERV1 12 474 -389 438 69 0 0 chr15 57807133 57807191 -43573330 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 1745 138 0 0 chr15 57807192 57807446 -43573075 - AluSx SINE Alu -26 286 33 2264 201 88 117 chr15 57807446 57807798 -43572723 + MER21B LTR ERV1 473 794 -69 301 252 176 0 chr15 57808473 57808592 -43571929 + L3 LINE CR1 1341 1480 -97 276 289 96 0 chr15 57808608 57808712 -43571809 + MIR SINE MIR 117 230 -32 204 296 34 45 chr15 57810495 57810583 -43569938 - L2 LINE L2 -4 3268 3182 1601 148 4 8 chr15 57812079 57812343 -43568178 + L1MD3 LINE L1 7731 7993 -2 483 60 0 0 chr15 57813537 57813604 -43566917 + (TG)n Simple_repeat Simple_repeat 1 67 0 475 241 56 0 chr15 57814596 57814704 -43565817 - L2 LINE L2 -9 3304 3191 840 255 37 9 chr15 57814707 57814923 -43565598 - MER58A DNA MER1_type -1 223 2 441 315 103 13 chr15 57815065 57815297 -43565224 + MIR SINE MIR 7 259 -3 180 200 0 0 chr15 57815303 57815348 -43565173 + (CAA)n Simple_repeat Simple_repeat 2 46 0 216 229 0 0 chr15 57815348 57815396 -43565125 - MIR SINE MIR -83 125 78 504 269 39 0 chr15 57815419 57815549 -43564972 + L2 LINE L2 3174 3308 -5 1717 84 46 0 chr15 57817168 57817407 -43563114 + L1PA13 LINE L1 5910 6159 -4 220 333 0 23 chr15 57817627 57817714 -43562807 + L2 LINE L2 3188 3272 0 22 0 0 0 chr15 57818042 57818064 -43562457 + AT_rich Low_complexity Low_complexity 1 22 0 2281 78 16 56 chr15 57818347 57818669 -43561852 + AluY SINE Alu 1 309 -2 552 261 37 65 chr15 57819540 57819755 -43560766 + MIR SINE MIR 48 256 -6 2165 96 14 0 chr15 57820658 57820940 -43559581 + AluSc SINE Alu 3 288 -21 230 164 18 0 chr15 57821912 57821967 -43558554 + GA-rich Low_complexity Low_complexity 2 57 0 1232 201 5 9 chr15 57822528 57822742 -43557779 + MER20 DNA MER1_type 7 219 0 399 21 0 0 chr15 57822934 57822982 -43557539 + (CA)n Simple_repeat Simple_repeat 2 49 0 1913 106 0 25 chr15 57823179 57823453 -43557068 + AluSx SINE Alu 41 307 -5 282 56 0 0 chr15 57823453 57823489 -43557032 + (GA)n Simple_repeat Simple_repeat 1 36 0 233 229 0 0 chr15 57823725 57823773 -43556748 + L1ME LINE L1 5782 5829 -292 338 273 83 0 chr15 57823790 57823911 -43556610 + L2 LINE L2 3182 3312 -1 204 40 0 0 chr15 57824492 57824517 -43556004 + (GA)n Simple_repeat Simple_repeat 2 26 0 204 277 0 15 chr15 57824837 57824902 -43555619 + GA-rich Low_complexity Low_complexity 1 64 0 1681 271 71 21 chr15 57825353 57825873 -43554648 + MLT1H1 LTR MaLR 1 546 -9 441 305 37 24 chr15 57826018 57826182 -43554339 + MIR SINE MIR 45 210 -52 294 29 0 0 chr15 57827439 57827474 -43553047 + (GA)n Simple_repeat Simple_repeat 1 35 0 330 169 0 0 chr15 57828754 57828819 -43551702 + (CA)n Simple_repeat Simple_repeat 1 65 0 201 224 61 0 chr15 57829576 57829625 -43550896 - MIR3 SINE MIR -47 161 110 330 273 172 8 chr15 57830460 57830588 -43549933 - MIR3 SINE MIR -6 202 54 257 236 18 0 chr15 57831569 57831624 -43548897 + (TG)n Simple_repeat Simple_repeat 1 56 0 243 333 71 37 chr15 57831961 57832255 -43548266 + L2 LINE L2 2809 3112 -160 399 261 28 35 chr15 57832275 57832417 -43548104 + MER117 DNA MER1_type 5 145 -52 353 309 8 8 chr15 57832453 57832576 -43547945 - MIR3 SINE MIR -52 156 34 22 0 0 0 chr15 57833899 57833921 -43546600 + AT_rich Low_complexity Low_complexity 1 22 0 552 333 5 11 chr15 57834068 57834257 -43546264 - MIR3 SINE MIR -1 207 20 868 165 34 6 chr15 57834897 57835073 -43545448 - MER5A DNA MER1_type -8 181 1 29 0 0 0 chr15 57835921 57835950 -43544571 + AT_rich Low_complexity Low_complexity 1 29 0 1328 191 93 18 chr15 57838527 57838698 -43541823 - AluJo SINE Alu -13 299 98 396 0 0 0 chr15 57838698 57838742 -43541779 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1328 191 93 18 chr15 57838742 57838848 -43541673 - AluJo SINE Alu -214 98 1 266 284 10 29 chr15 57840350 57840452 -43540069 - MIR SINE MIR -117 145 46 2370 231 24 0 chr15 57840615 57841109 -43539412 - MER119 DNA MER1_type -73 510 5 21 36 0 0 chr15 57841362 57841390 -43539131 + AT_rich Low_complexity Low_complexity 1 28 0 543 253 136 0 chr15 57841753 57841907 -43538614 + MER63A DNA MER1_type 9 183 -27 505 278 40 53 chr15 57845951 57846178 -43534343 - MIR SINE MIR -29 233 10 215 158 0 35 chr15 57846188 57846245 -43534276 + (CAT)n Simple_repeat Simple_repeat 2 56 0 274 296 0 0 chr15 57846247 57846318 -43534203 - MIR SINE MIR -112 150 80 306 296 77 18 chr15 57846452 57846621 -43533900 + MIR3 SINE MIR 16 194 -14 209 114 45 23 chr15 57847939 57847983 -43532538 + T-rich Low_complexity Low_complexity 4 48 0 327 312 84 26 chr15 57849631 57849785 -43530736 - MIR SINE MIR -66 196 34 1657 133 24 109 chr15 57849986 57850325 -43530196 - AluYb8 SINE Alu -8 310 1 1698 144 32 58 chr15 57850787 57851100 -43529421 - AluSx SINE Alu -7 305 1 1539 173 3 53 chr15 57851219 57851551 -43528970 + AluJo SINE Alu 1 317 0 2295 98 0 0 chr15 57851564 57851893 -43528628 + AluY SINE Alu 2 330 0 404 234 22 73 chr15 57851958 57852095 -43528426 - L1MB7 LINE L1 0 6184 6055 218 307 105 0 chr15 57853038 57853152 -43527369 + L2 LINE L2 3112 3237 -35 279 315 45 0 chr15 57853591 57853680 -43526841 + L2 LINE L2 3221 3313 0 189 365 10 10 chr15 57853829 57853925 -43526596 - MIR SINE MIR -147 115 20 240 219 55 0 chr15 57854225 57854298 -43526223 + MIR3 SINE MIR 91 167 -41 879 203 21 31 chr15 57854309 57854501 -43526020 + MER3 DNA MER1_type 17 206 -3 530 261 136 10 chr15 57854545 57854744 -43525777 + MIR SINE MIR 19 242 -20 437 168 17 173 chr15 57855395 57855568 -43524953 + MER5B DNA MER1_type 25 170 -8 416 226 8 83 chr15 57856839 57856972 -43523549 - MIR SINE MIR -70 192 70 272 275 1 38 chr15 57858102 57858223 -43522298 - MIR SINE MIR -60 148 30 243 122 0 0 chr15 57858988 57859037 -43521484 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 2063 260 42 2 chr15 57859939 57860485 -43520036 + L1ME3A LINE L1 5603 6170 0 438 271 79 17 chr15 57860492 57860669 -43519852 + MIR SINE MIR 50 237 -25 443 228 108 80 chr15 57860669 57860939 -43519582 - L1MC5 LINE L1 -15 7946 7660 2115 131 65 0 chr15 57860939 57861290 -43519231 + L1MC1 LINE L1 5960 6333 0 443 228 108 80 chr15 57861290 57861418 -43519103 - L1MC5 LINE L1 -301 7660 7537 317 238 24 24 chr15 57862147 57862231 -43518290 + L2 LINE L2 3188 3271 -1 180 217 22 0 chr15 57863370 57863416 -43517105 + MIR SINE MIR 86 132 -130 2245 119 0 0 chr15 57863594 57863942 -43516579 + AluSx SINE Alu 1 348 0 231 326 12 12 chr15 57864473 57864559 -43515962 + MIR3 SINE MIR 102 187 -21 181 322 11 33 chr15 57864570 57864660 -43515861 + L2 LINE L2 3223 3310 -3 474 297 141 15 chr15 57865322 57865777 -43514744 + L1ME4a LINE L1 5552 6063 -58 26 50 0 0 chr15 57865824 57865864 -43514657 + AT_rich Low_complexity Low_complexity 1 40 0 2082 120 0 4 chr15 57866296 57866600 -43513921 + AluSx SINE Alu 9 311 0 204 305 221 0 chr15 57866635 57866766 -43513755 - MIR3 SINE MIR -35 173 14 485 310 8 0 chr15 57867407 57867536 -43512985 - MIR3 SINE MIR -21 187 58 186 189 0 0 chr15 57867724 57867761 -43512760 + T-rich Low_complexity Low_complexity 1 37 0 356 273 7 58 chr15 57868545 57868684 -43511837 - MER5A DNA MER1_type -6 183 52 956 184 11 5 chr15 57868772 57868957 -43511564 + MER3 DNA MER1_type 16 201 -8 196 308 47 28 chr15 57871819 57871926 -43508595 + MIR SINE MIR 25 133 -129 198 333 89 33 chr15 57872061 57872274 -43508247 + L2 LINE L2 2825 3049 -223 494 179 8 119 chr15 57873129 57873263 -43507258 - MER5A DNA MER1_type 0 189 71 288 0 0 0 chr15 57873263 57873295 -43507226 + (TTG)n Simple_repeat Simple_repeat 2 33 0 585 206 0 40 chr15 57873297 57873423 -43507098 - FLAM_C SINE Alu -10 133 13 552 136 0 0 chr15 57873438 57873519 -43507002 - MER5A DNA MER1_type -108 81 1 503 186 26 9 chr15 57873746 57873859 -43506662 - MIR SINE MIR -23 239 125 192 200 0 0 chr15 57873862 57873902 -43506619 + L2 LINE L2 3233 3272 0 21 0 0 0 chr15 57874251 57874272 -43506249 + AT_rich Low_complexity Low_complexity 1 21 0 531 231 210 31 chr15 57875796 57875991 -43504530 - MIR SINE MIR -1 261 32 616 296 14 19 chr15 57976227 57976443 -43404078 + MIR SINE MIR 46 260 -2 261 244 11 44 chr15 57976867 57976957 -43403564 - MIR SINE MIR -85 123 37 192 290 140 45 chr15 57978386 57978607 -43401914 - L2 LINE L2 -219 3053 2812 505 262 16 0 chr15 57980538 57980664 -43399857 - MER94 DNA DNA -3 131 4 8999 201 40 35 chr15 57981043 57981717 -43398804 - L1MB7 LINE L1 -16 6666 5997 363 98 0 0 chr15 57981717 57981778 -43398743 + (CAT)n Simple_repeat Simple_repeat 3 63 0 8999 201 40 35 chr15 57981778 57982547 -43397974 - L1MB7 LINE L1 -685 5997 5233 2391 83 0 10 chr15 57982547 57982849 -43397672 - AluY SINE Alu -12 299 1 8999 201 40 35 chr15 57982849 57983302 -43397219 - L1MB7 LINE L1 -1449 5233 4784 282 116 0 0 chr15 57983302 57983345 -43397176 + (TG)n Simple_repeat Simple_repeat 2 44 0 8999 201 40 35 chr15 57983345 57984567 -43395954 - L1MB7 LINE L1 -1898 4784 3531 6042 217 50 30 chr15 57984561 57986499 -43394022 - L1MB7 LINE L1 -4660 1986 2 * 5891 124 25 34 chr15 57986631 57987542 -43392979 + MER4D LTR ERV1 1 903 0 205 207 0 17 chr15 57987993 57988051 -43392470 + (TTA)n Simple_repeat Simple_repeat 2 58 0 803 221 52 102 chr15 57988190 57988515 -43392006 + MER5C DNA MER1_type 1 309 -15 2315 94 10 0 chr15 57989170 57989467 -43391054 - AluSc SINE Alu -9 300 1 1723 120 0 0 chr15 57989718 57989951 -43390570 - AluSg/x SINE Alu -9 303 71 344 297 138 4 chr15 57991305 57991506 -43389015 - MIR SINE MIR -12 250 22 294 265 131 46 chr15 57992596 57992646 -43387875 - MIR SINE MIR -68 140 96 2820 197 26 0 chr15 57992646 57993175 -43387346 - L1MB5 LINE L1 -8 6166 5624 294 265 131 46 chr15 57993175 57993298 -43387223 - MIR SINE MIR -112 96 16 246 62 0 0 chr15 57994854 57994886 -43385635 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 378 280 142 60 chr15 57995047 57995201 -43385320 + L1ME4a LINE L1 5579 5719 -402 1426 181 24 55 chr15 57995201 57995533 -43384988 + AluJo SINE Alu 1 323 0 378 280 142 60 chr15 57995533 57995659 -43384862 + L1ME4a LINE L1 5719 5883 -238 302 301 55 48 chr15 57996785 57996931 -43383590 - MIR SINE MIR -12 250 104 2259 107 0 19 chr15 57996943 57997253 -43383268 + AluSx SINE Alu 1 304 -8 1422 118 9 5 chr15 57999651 57999862 -43380659 - AluSg/x SINE Alu -6 306 95 498 223 45 0 chr15 58000673 58000785 -43379736 - MIR SINE MIR -60 202 86 490 327 64 28 chr15 58000857 58001108 -43379413 + MIR SINE MIR 3 262 0 273 350 28 33 chr15 58001213 58001393 -43379128 + MIR SINE MIR 14 192 -70 186 43 0 0 chr15 58001419 58001442 -43379079 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 261 237 0 17 chr15 58001456 58001515 -43379006 - L2 LINE L2 -28 3244 3187 355 302 279 16 chr15 58001876 58002134 -43378387 - L2 LINE L2 -5 3267 2942 466 252 39 0 chr15 58002900 58003003 -43377518 - MIR SINE MIR -77 185 79 183 42 0 0 chr15 58004180 58004204 -43376317 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 181 314 0 0 chr15 58004532 58004583 -43375938 + L3 LINE CR1 1526 1576 -1 669 222 83 17 chr15 58005211 58005391 -43375130 - MIR SINE MIR -54 208 17 181 329 27 0 chr15 58005425 58005498 -43375023 + L2 LINE L2 2990 3064 -208 363 264 169 60 chr15 58007432 58007633 -43372888 - MIR SINE MIR -27 235 13 386 300 58 8 chr15 58008415 58008551 -43371970 - MIR SINE MIR -57 151 30 229 286 18 0 chr15 58009400 58009456 -43371065 - L2 LINE L2 -12 3260 3204 1511 166 51 81 chr15 58010280 58010716 -43369805 - MLT1B LTR MaLR 0 467 1 320 260 170 0 chr15 58010852 58010952 -43369569 + L2 LINE L2 3156 3272 0 818 228 70 0 chr15 58012671 58012842 -43367679 - MER5A DNA MER1_type 0 189 7 461 256 17 8 chr15 58012856 58012973 -43367548 - MER5B DNA MER1_type -10 168 51 241 192 39 0 chr15 58012982 58013034 -43367487 - L1MC4 LINE L1 0 8042 7989 2376 223 95 10 chr15 58013041 58013661 -43366860 - L1MC4 LINE L1 -140 7902 7230 335 194 233 0 chr15 58013667 58013770 -43366751 - L1MC4 LINE L1 -969 7073 6947 364 191 0 0 chr15 58013771 58013834 -43366687 - MER5B DNA MER1_type -114 64 2 204 289 0 0 chr15 58014123 58014175 -43366346 + MIR SINE MIR 50 101 -161 533 241 59 29 chr15 58014178 58014348 -43366173 + MLT1B LTR MaLR 1 175 -199 836 169 24 24 chr15 58014410 58014576 -43365945 + MLT1B LTR MaLR 196 361 -29 400 286 48 0 chr15 58014576 58014702 -43365819 + MIR SINE MIR 128 259 -3 281 244 12 61 chr15 58014768 58014850 -43365671 - L2 LINE L2 -8 3264 3187 398 191 52 78 chr15 58016538 58016653 -43363868 - MARNA DNA Mariner -217 369 258 198 308 27 62 chr15 58017181 58017327 -43363194 + L3b LINE CR1 1123 1263 -320 494 333 34 6 chr15 58017409 58017586 -43362935 + MIR3 SINE MIR 12 193 -15 216 320 74 33 chr15 58018082 58018204 -43362317 - MIR SINE MIR -73 189 63 * 440 311 118 30 chr15 58018202 58018533 -43361988 - L2 LINE L2 -2 3311 2952 2054 96 26 42 chr15 58019460 58019772 -43360749 + AluY SINE Alu 1 307 -4 208 229 0 0 chr15 58020536 58020584 -43359937 + CT-rich Low_complexity Low_complexity 2 49 0 295 60 40 0 chr15 58020857 58020907 -43359614 + (GA)n Simple_repeat Simple_repeat 1 52 0 931 269 133 18 chr15 58021408 58021806 -43358715 + L1ME4a LINE L1 5384 5827 -294 2153 130 0 0 chr15 58021806 58022105 -43358416 + AluSx SINE Alu 1 299 -13 208 204 74 0 chr15 58022200 58022254 -43358267 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 357 257 9 35 chr15 58022261 58022374 -43358147 - MIR SINE MIR -44 218 109 258 257 20 81 chr15 58022493 58022555 -43357966 + L1ME4a LINE L1 5982 6046 -75 2299 79 0 0 chr15 58022555 58022875 -43357646 - AluSc SINE Alu 0 320 1 258 257 20 81 chr15 58022875 58022959 -43357562 + L1ME4a LINE L1 6046 6120 -1 839 274 62 49 chr15 58023464 58023832 -43356689 + Charlie2 DNA MER1_type 1 373 -2489 1422 162 56 212 chr15 58023842 58024805 -43355716 + Charlie2 DNA MER1_type 2013 2825 -37 369 0 0 0 chr15 58024812 58024853 -43355668 + (TG)n Simple_repeat Simple_repeat 2 42 0 209 284 71 71 chr15 58025563 58025690 -43354831 + MIR SINE MIR 63 189 -73 1505 71 20 0 chr15 58026258 58026456 -43354065 + AluY SINE Alu 93 294 -17 243 0 0 0 chr15 58026575 58026602 -43353919 + (TG)n Simple_repeat Simple_repeat 2 28 0 258 386 30 8 chr15 58026784 58026916 -43353605 - MIR3 SINE MIR -7 201 67 24 0 0 0 chr15 58027039 58027063 -43353458 + AT_rich Low_complexity Low_complexity 1 24 0 1142 173 19 42 chr15 58027704 58027918 -43352603 - AluJo SINE Alu -17 295 87 2217 113 0 3 chr15 58027930 58028230 -43352291 - AluSx SINE Alu -9 303 5 181 292 0 0 chr15 58028580 58028628 -43351893 - L3 LINE CR1 -2 1575 1528 468 317 40 15 chr15 58028864 58029063 -43351458 - L3 LINE CR1 -129 1448 1245 217 236 18 18 chr15 58031142 58031197 -43349324 + MIR SINE MIR 100 154 -108 221 260 20 0 chr15 58031559 58031609 -43348912 - MIR SINE MIR -136 72 22 2041 139 0 7 chr15 58032986 58033280 -43347241 - AluJb SINE Alu -20 292 1 313 295 0 9 chr15 58033425 58033540 -43346981 + MIR SINE MIR 50 162 -65 1035 189 87 5 chr15 58033542 58033738 -43346783 + MER58A DNA MER1_type 13 224 0 2425 69 3 0 chr15 58034109 58034412 -43346109 - AluY SINE Alu -7 304 1 483 245 42 33 chr15 58034482 58034665 -43345856 + MIR SINE MIR 62 243 -19 187 317 150 33 chr15 58034779 58034899 -43345622 - L3 LINE CR1 -751 826 693 24 53 0 0 chr15 58035753 58035791 -43344730 + AT_rich Low_complexity Low_complexity 1 38 0 349 299 104 18 chr15 58035874 58036038 -43344483 - MIR SINE MIR -1 261 84 465 327 79 18 chr15 58036101 58036379 -43344142 + L3 LINE CR1 932 1226 -351 604 336 8 25 chr15 58036393 58036645 -43343876 + MIR SINE MIR 20 260 -2 206 178 0 22 chr15 58037347 58037392 -43343129 + (TTA)n Simple_repeat Simple_repeat 3 46 0 283 315 6 37 chr15 58038874 58039036 -43341485 + (TATG)n Simple_repeat Simple_repeat 1 157 0 198 309 0 0 chr15 58040343 58040398 -43340123 + L2 LINE L2 2257 2311 -1003 219 306 32 48 chr15 58040701 58040825 -43339696 + MIR SINE MIR 22 143 -65 272 232 81 30 chr15 58041230 58041329 -43339192 - MLT1L LTR MaLR -4 611 508 495 284 27 44 chr15 58041729 58041912 -43338609 - MIR SINE MIR -1 261 82 333 257 177 0 chr15 58042053 58042166 -43338355 + MER94 DNA DNA 2 134 0 454 342 10 20 chr15 58042404 58042606 -43337915 + MIR SINE MIR 13 212 -50 2353 91 0 10 chr15 58043233 58043542 -43336979 + AluSx SINE Alu 1 306 -6 2466 130 8 8 chr15 58043553 58043908 -43336613 - THE1A LTR MaLR 0 355 1 1669 164 3 59 chr15 58044601 58044782 -43335739 - AluJo SINE Alu -6 306 149 2076 131 3 7 chr15 58044782 58045080 -43335441 - AluSx SINE Alu -15 297 1 1669 164 3 59 chr15 58045080 58045222 -43335299 - AluJo SINE Alu -163 149 1 209 345 24 12 chr15 58047411 58047495 -43333026 + L2 LINE L2 3112 3196 -76 428 313 142 8 chr15 58047743 58047958 -43332563 - MIR SINE MIR -18 244 9 380 325 18 30 chr15 58048123 58048292 -43332229 + MIR SINE MIR 93 259 -3 569 265 15 8 chr15 58048749 58048881 -43331640 - L2 LINE L2 0 3272 3140 1610 162 78 90 chr15 58049038 58049477 -43331044 + L1MB7 LINE L1 5724 6156 -28 553 325 96 48 chr15 58049651 58050255 -43330266 - L2 LINE L2 -456 2858 2226 1551 246 67 0 chr15 58050359 58050762 -43329759 + L1MC4 LINE L1 7471 7900 -142 214 338 99 13 chr15 58050874 58051025 -43329496 - L2 LINE L2 -1944 1370 1207 225 279 16 0 chr15 58051242 58051303 -43329218 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 543 285 64 0 chr15 58053239 58053411 -43327110 - MIR SINE MIR -1 261 79 784 211 13 0 chr15 58053977 58054129 -43326392 + MER33 DNA MER1_type 1 154 -170 786 189 8 0 chr15 58054131 58054253 -43326268 + FLAM_A SINE Alu 3 125 -17 873 190 0 11 chr15 58054253 58054437 -43326084 + MER33 DNA MER1_type 143 324 0 198 0 0 0 chr15 58055129 58055151 -43325370 + (A)n Simple_repeat Simple_repeat 1 22 0 260 265 137 10 chr15 58057218 58057320 -43323201 + MER5A DNA MER1_type 53 167 -22 * 303 277 106 11 chr15 58057258 58057352 -43323169 - MER5A DNA MER1_type -85 104 2 702 254 149 0 chr15 58057366 58057594 -43322927 + MIR SINE MIR 1 262 0 477 284 37 122 chr15 58057959 58058230 -43322291 - L2 LINE L2 -1 3271 3024 377 276 62 24 chr15 58059111 58059274 -43321247 - MIR3 SINE MIR -35 173 2 249 61 0 0 chr15 58059811 58059844 -43320677 + Alu SINE Alu 39 71 -228 1971 97 4 8 chr15 58059845 58060103 -43320418 + AluSg SINE Alu 43 299 -11 556 282 34 13 chr15 58060120 58060269 -43320252 - MER5A DNA MER1_type -3 186 35 441 0 0 0 chr15 58060453 58060502 -43320019 + (TA)n Simple_repeat Simple_repeat 1 49 0 308 330 80 0 chr15 58060945 58061057 -43319464 + L2 LINE L2 3151 3271 -1 209 200 22 0 chr15 58061721 58061766 -43318755 + GA-rich Low_complexity Low_complexity 2 47 0 199 396 21 0 chr15 58061768 58061864 -43318657 - MIR SINE MIR -6 256 159 182 36 0 36 chr15 58061885 58061913 -43318608 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 930 157 7 0 chr15 58061915 58062062 -43318459 - FRAM SINE Alu -30 146 1 305 274 71 0 chr15 58062068 58062152 -43318369 - MIR SINE MIR -64 144 55 * 731 286 62 4 chr15 58062151 58062392 -43318129 - MIR SINE MIR 0 262 8 488 202 160 34 chr15 58062583 58062702 -43317819 + MER94 DNA DNA 1 134 0 264 77 0 0 chr15 58062718 58062757 -43317764 + (CA)n Simple_repeat Simple_repeat 2 40 0 421 307 17 28 chr15 58063424 58063600 -43316921 - MIR SINE MIR -50 212 39 1026 213 80 37 chr15 58064715 58065045 -43315476 + MER33 DNA MER1_type 1 324 0 553 204 183 7 chr15 58065080 58065217 -43315304 + MER5A DNA MER1_type 29 189 0 354 239 0 0 chr15 58065217 58065284 -43315237 + L2 LINE L2 3247 3313 0 2525 88 12 9 chr15 58065412 58065755 -43314766 + THE1B LTR MaLR 1 344 -20 243 0 0 0 chr15 58067936 58067963 -43312558 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 333 167 0 125 chr15 58069951 58069987 -43310534 + MER103 DNA DNA 23 62 -104 2297 113 0 3 chr15 58069987 58070296 -43310225 - AluSg SINE Alu -2 308 1 333 167 0 125 chr15 58070296 58070355 -43310166 + MER103 DNA DNA 62 106 -60 793 240 39 5 chr15 58070445 58070649 -43309872 + MER58A DNA MER1_type 1 211 -13 613 241 134 31 chr15 58071068 58071292 -43309229 - MIR SINE MIR -14 248 2 269 303 341 0 chr15 58073168 58073300 -43307221 + MER91A DNA MER1_type 8 184 -12 351 0 0 0 chr15 58074185 58074224 -43306297 + (TA)n Simple_repeat Simple_repeat 2 40 0 2073 127 0 40 chr15 58075173 58075496 -43305025 - AluJb SINE Alu -2 310 1 426 260 99 42 chr15 58076584 58076776 -43303745 - MIR SINE MIR -49 213 11 240 358 33 25 chr15 58079138 58079258 -43301263 + L2 LINE L2 3146 3266 -6 1152 35 0 0 chr15 58080264 58080405 -43300116 + (GAA)n Simple_repeat Simple_repeat 1 141 0 1487 116 70 0 chr15 58081099 58081314 -43299207 + MER30 DNA MER1_type 1 230 0 2071 99 3 0 chr15 58081425 58081757 -43298764 + AluY SINE Alu 1 333 0 206 176 0 0 chr15 58082102 58082136 -43298385 + MIR SINE MIR 222 255 -7 2277 97 0 0 chr15 58082138 58082428 -43298093 + AluSx SINE Alu 1 290 -22 251 280 32 32 chr15 58082791 58082948 -43297573 - L2 LINE L2 -188 3084 2928 368 304 137 25 chr15 58083916 58084120 -43296401 + MIR SINE MIR 34 260 -2 249 308 35 71 chr15 58084245 58084414 -43296107 + MIR3 SINE MIR 32 194 -14 321 316 71 13 chr15 58084838 58084993 -43295528 - MER5A DNA MER1_type 0 189 26 275 125 0 0 chr15 58085445 58085485 -43295036 + L2 LINE L2 3014 3053 -219 2348 90 3 10 chr15 58086774 58087084 -43293437 - AluSp SINE Alu -5 308 1 243 0 0 0 chr15 58087236 58087263 -43293258 + (A)n Simple_repeat Simple_repeat 1 27 0 2212 118 20 0 chr15 58087463 58087760 -43292761 - AluSg SINE Alu -7 303 1 284 327 85 20 chr15 58087896 58088049 -43292472 - MIR SINE MIR -59 203 41 257 49 73 0 chr15 58090078 58090119 -43290402 + A-rich Low_complexity Low_complexity 2 45 0 254 278 0 0 chr15 58090932 58090986 -43289535 - L2 LINE L2 -2 3270 3217 386 331 16 8 chr15 58091033 58091154 -43289367 - MIR SINE MIR -121 141 20 2405 80 0 7 chr15 58091759 58092061 -43288460 - AluY SINE Alu -11 300 1 242 328 129 26 chr15 58092093 58092209 -43288312 - MER5B DNA MER1_type 0 178 51 514 256 8 0 chr15 58092211 58092328 -43288193 - L1ME3 LINE L1 -3 6159 6042 327 143 107 0 chr15 58092330 58092386 -43288135 + MER5B DNA MER1_type 115 176 -2 200 289 39 0 chr15 58092595 58092647 -43287874 + L2 LINE L2 3128 3181 -91 581 211 47 47 chr15 58092876 58093004 -43287517 + FLAM_C SINE Alu 1 128 -5 434 157 0 11 chr15 58093006 58093095 -43287426 + (TA)n Simple_repeat Simple_repeat 1 88 0 987 195 5 5 chr15 58093100 58093285 -43287236 + AluSg/x SINE Alu 121 305 -7 360 332 64 72 chr15 58094217 58094482 -43286039 + L2 LINE L2 3010 3272 0 184 281 53 0 chr15 58094495 58094552 -43285969 - MIR SINE MIR -116 92 33 389 343 47 18 chr15 58095623 58095792 -43284729 - MIR3 SINE MIR -15 193 20 189 107 0 0 chr15 58098780 58098808 -43281713 + (TG)n Simple_repeat Simple_repeat 2 29 0 329 301 0 0 chr15 58099760 58099853 -43280668 + MIR SINE MIR 170 262 0 208 308 37 28 chr15 58099944 58100051 -43280470 + L2 LINE L2 2948 3055 -217 748 266 174 14 chr15 58100140 58100415 -43280106 - MER5C DNA MER1_type 0 324 6 211 164 33 0 chr15 58100541 58100602 -43279919 + (TGAA)n Simple_repeat Simple_repeat 1 63 0 232 263 40 10 chr15 58101661 58101760 -43278761 - L2 LINE L2 -214 3058 2957 2833 157 24 22 chr15 58101783 58102071 -43278450 - Tigger3b DNA MER2_type -2529 499 208 2194 103 7 0 chr15 58102071 58102362 -43278159 - AluSc SINE Alu -16 293 1 2833 157 24 22 chr15 58102362 58102571 -43277950 - Tigger3b DNA MER2_type -2820 208 1 582 252 32 7 chr15 58102645 58102800 -43277721 - MIR SINE MIR -102 160 2 505 241 9 0 chr15 58103094 58103210 -43277311 - L2 LINE L2 -1 3312 3196 2088 132 3 0 chr15 58103273 58103562 -43276959 - AluSc SINE Alu -19 290 1 975 204 60 23 chr15 58103857 58104073 -43276448 - MER58A DNA MER1_type 0 224 1 224 300 107 27 chr15 58104331 58104481 -43276040 + L3b LINE CR1 1301 1462 -121 230 321 146 6 chr15 58106651 58106816 -43273705 - MIR SINE MIR -74 188 1 23 33 0 0 chr15 58107084 58107114 -43273407 + AT_rich Low_complexity Low_complexity 1 30 0 456 270 121 51 chr15 58107148 58107370 -43273151 - L2 LINE L2 -77 3236 3031 1799 124 110 58 chr15 58107370 58107716 -43272805 - THE1B LTR MaLR 0 364 1 456 270 121 51 chr15 58107716 58107942 -43272579 - L2 LINE L2 -282 3031 2756 185 143 29 0 chr15 58109453 58109488 -43271033 + L2 LINE L2 3265 3300 -13 228 316 113 39 chr15 58110627 58110858 -43269663 + L2 LINE L2 2565 2812 -502 278 351 117 52 chr15 58110951 58111276 -43269245 + L2 LINE L2 2853 3198 -74 2253 115 3 3 chr15 58112059 58112371 -43268150 + AluSx SINE Alu 1 312 0 1686 176 24 14 chr15 58113842 58114138 -43266383 + AluJo SINE Alu 1 299 -13 822 171 11 4 chr15 58114150 58114416 -43266105 + GA-rich Low_complexity Low_complexity 1 268 0 307 118 0 20 chr15 58114418 58114469 -43266052 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 219 330 60 10 chr15 58114498 58114598 -43265923 + MIR SINE MIR 38 142 -66 391 252 114 23 chr15 58114861 58114992 -43265529 - L2 LINE L2 0 3313 3171 187 262 33 16 chr15 58115495 58115556 -43264965 + L2 LINE L2 3201 3262 -10 227 153 85 51 chr15 58115868 58115927 -43264594 + MIR SINE MIR 120 180 -82 21 0 0 0 chr15 58117131 58117152 -43263369 + AT_rich Low_complexity Low_complexity 1 21 0 226 303 15 0 chr15 58117409 58117475 -43263046 - L2 LINE L2 -4 3309 3243 244 287 53 11 chr15 58117700 58117794 -43262727 + L2 LINE L2 3160 3257 -15 246 323 52 39 chr15 58122149 58122304 -43258217 - MIR3 SINE MIR -6 202 46 256 273 0 0 chr15 58123010 58123065 -43257456 + (TATG)n Simple_repeat Simple_repeat 4 58 0 249 276 48 38 chr15 58123843 58123948 -43256573 - MIR SINE MIR -68 140 35 257 224 0 0 chr15 58124109 58124167 -43256354 + (CA)n Simple_repeat Simple_repeat 2 59 0 817 190 5 54 chr15 58125241 58125296 -43255225 - MER58A DNA MER1_type -2209 211 155 1541 173 60 0 chr15 58125296 58125588 -43254933 - AluJo SINE Alu 0 308 1 817 190 5 54 chr15 58125588 58125715 -43254806 - MER58A DNA MER1_type -2265 155 37 814 215 21 5 chr15 58126858 58127044 -43253477 + MER5A DNA MER1_type 1 189 0 251 285 153 0 chr15 58127065 58127202 -43253319 - MIR3 SINE MIR -48 160 3 662 204 90 114 chr15 58129814 58129970 -43250551 + MER8 DNA MER2_type 1 150 -89 2280 113 0 0 chr15 58129970 58130272 -43250249 - AluSq SINE Alu -11 302 1 662 204 90 114 chr15 58130272 58130360 -43250161 + MER8 DNA MER2_type 150 239 0 180 224 47 71 chr15 58130389 58130474 -43250047 - MIR SINE MIR -51 211 129 2418 90 0 3 chr15 58130643 58130953 -43249568 - AluY SINE Alu -2 309 1 287 263 90 60 chr15 58131985 58132118 -43248403 - L2 LINE L2 0 3272 3136 435 273 101 19 chr15 58132452 58132661 -43247860 - MIR SINE MIR -25 237 12 191 273 76 15 chr15 58132746 58132812 -43247709 + L2 LINE L2 3238 3307 -6 211 374 54 12 chr15 58133465 58133631 -43246890 + MIR SINE MIR 72 244 -18 321 197 0 0 chr15 58133646 58133712 -43246809 + (TAGG)n Simple_repeat Simple_repeat 2 67 0 341 305 66 23 chr15 58133805 58133976 -43246545 + MIR SINE MIR 38 214 -48 2031 113 43 7 chr15 58133980 58134106 -43246415 + AluSx SINE Alu 1 121 -191 387 0 0 0 chr15 58134106 58134149 -43246372 + (CA)n Simple_repeat Simple_repeat 2 44 0 2031 113 43 7 chr15 58134149 58134304 -43246217 + AluSx SINE Alu 121 292 -20 196 268 36 0 chr15 58134322 58134378 -43246143 + MIR SINE MIR 203 260 -2 706 220 75 6 chr15 58136177 58136350 -43244171 + MER5A DNA MER1_type 3 187 -2 263 202 30 97 chr15 58136739 58136865 -43243656 + MIR SINE MIR 43 163 -63 468 241 62 0 chr15 58137213 58137325 -43243196 - MER119 DNA MER1_type -3 580 462 2224 117 0 0 chr15 58137376 58137674 -43242847 - AluSx SINE Alu -14 298 1 245 227 0 0 chr15 58137682 58137726 -43242795 - MER119 DNA MER1_type -500 83 40 299 182 0 15 chr15 58139582 58139648 -43240873 - MIR SINE MIR -26 236 172 23 33 0 0 chr15 58140912 58140942 -43239579 + AT_rich Low_complexity Low_complexity 1 30 0 2349 89 0 7 chr15 58141409 58141711 -43238810 + AluY SINE Alu 1 300 -11 2409 87 0 7 chr15 58141833 58142142 -43238379 - AluSx SINE Alu -5 307 1 377 269 23 31 chr15 58142156 58142286 -43238235 - MIR SINE MIR -74 188 60 439 290 32 0 chr15 58143383 58143507 -43237014 - MIR3 SINE MIR -25 183 56 273 239 64 55 chr15 58143593 58143702 -43236819 - MIR SINE MIR -114 148 39 651 182 0 91 chr15 58144560 58144736 -43235785 - MER5B DNA MER1_type -16 162 3 318 262 35 48 chr15 58145716 58145861 -43234660 + MIR3 SINE MIR 61 203 -5 1256 155 79 49 chr15 58147199 58147503 -43233018 - L1MA9 LINE L1 -4 6308 5996 252 294 0 0 chr15 58147693 58147761 -43232760 - MIR SINE MIR -108 154 87 303 146 0 0 chr15 58149178 58149233 -43231288 + (TG)n Simple_repeat Simple_repeat 2 56 0 22 35 0 0 chr15 58150000 58150029 -43230492 + AT_rich Low_complexity Low_complexity 1 29 0 1660 167 10 7 chr15 58150301 58150601 -43229920 + L1MB5 LINE L1 5857 6157 -17 196 273 91 26 chr15 58151299 58151376 -43229145 - MIR3 SINE MIR -18 190 109 431 299 65 15 chr15 58151531 58151732 -43228789 + MIR SINE MIR 49 259 -3 243 236 0 0 chr15 58152611 58152666 -43227855 - MIR SINE MIR -25 237 183 281 289 82 22 chr15 58152746 58152885 -43227636 + MIR3 SINE MIR 3 149 -93 207 139 0 0 chr15 58153001 58153037 -43227484 + (TCCC)n Simple_repeat Simple_repeat 3 38 0 278 267 223 44 chr15 58155333 58155539 -43224982 + MIR SINE MIR 20 262 0 1687 152 0 79 chr15 58156026 58156356 -43224165 + AluSx SINE Alu 9 312 0 180 0 0 0 chr15 58156571 58156591 -43223930 + (A)n Simple_repeat Simple_repeat 1 20 0 759 22 0 0 chr15 58158009 58158098 -43222423 + (GAAA)n Simple_repeat Simple_repeat 3 91 0 36 0 0 0 chr15 58159813 58159849 -43220672 + AT_rich Low_complexity Low_complexity 1 36 0 2447 48 3 0 chr15 58159856 58160150 -43220371 + AluY SINE Alu 1 295 -16 339 214 56 48 chr15 58160150 58160268 -43220253 + MER103 DNA DNA 43 164 -2 237 306 41 20 chr15 58161372 58161470 -43219051 + L2 LINE L2 2983 3082 -190 519 311 106 43 chr15 58163476 58165092 -43215429 + L1MC/D LINE L1 3611 5328 -818 1061 256 137 28 chr15 58165109 58165504 -43215017 - LTR16A LTR ERVL -10 440 3 604 280 135 25 chr15 58165509 58165834 -43214687 + L1MC/D LINE L1 5340 5700 -2108 432 214 89 42 chr15 58166253 58166421 -43214100 - MIR SINE MIR -27 235 60 360 64 0 0 chr15 58167438 58167485 -43213036 + (CA)n Simple_repeat Simple_repeat 2 48 0 261 0 0 0 chr15 58168759 58168788 -43211733 + (TG)n Simple_repeat Simple_repeat 1 29 0 417 293 121 6 chr15 58168944 58169118 -43211403 - L2 LINE L2 -556 2758 2565 22 0 0 0 chr15 58171890 58171912 -43208609 + AT_rich Low_complexity Low_complexity 1 22 0 416 238 175 25 chr15 58172016 58172176 -43208345 - MER117 DNA MER1_type -4 193 10 223 345 27 18 chr15 58172626 58172736 -43207785 + MIR3 SINE MIR 67 177 -31 48 72 0 0 chr15 58173527 58173624 -43206897 + AT_rich Low_complexity Low_complexity 1 97 0 427 252 81 9 chr15 58173658 58173769 -43206752 - L2 LINE L2 0 3313 3195 189 354 0 25 chr15 58174083 58174162 -43206359 - L2 LINE L2 -235 3037 2961 203 290 0 16 chr15 58174745 58174807 -43205714 + MIR3 SINE MIR 141 201 -7 1398 141 34 46 chr15 58176080 58176343 -43204178 + L1MA6 LINE L1 6037 6296 -4 22 0 0 0 chr15 58176377 58176399 -43204122 + AT_rich Low_complexity Low_complexity 1 22 0 229 277 10 69 chr15 58177792 58177893 -43202628 - MIR3 SINE MIR -30 178 84 220 213 106 0 chr15 58178196 58178243 -43202278 + L2 LINE L2 3216 3267 -5 208 291 0 0 chr15 58178843 58178898 -43201623 + L2 LINE L2 3214 3268 -4 545 291 6 0 chr15 58179638 58179796 -43200725 - MIR SINE MIR -6 256 98 299 248 38 60 chr15 58181119 58181252 -43199269 + MIR SINE MIR 114 243 -19 594 249 114 0 chr15 58182459 58182653 -43197868 + MIR SINE MIR 36 256 -6 417 244 61 8 chr15 58182962 58183093 -43197428 + L1ME4a LINE L1 5759 5896 -225 28 0 0 0 chr15 58183671 58183699 -43196822 + AT_rich Low_complexity Low_complexity 1 28 0 181 281 49 85 chr15 58183740 58183822 -43196699 - MIR SINE MIR -125 137 59 266 349 142 9 chr15 58184866 58185078 -43195443 - MIR SINE MIR -1 261 22 430 315 73 12 chr15 58186955 58187120 -43193401 - MIR SINE MIR -70 192 18 294 238 32 95 chr15 58187720 58187846 -43192675 - MIR SINE MIR -67 141 24 351 0 0 0 chr15 58189489 58189528 -43190993 + (T)n Simple_repeat Simple_repeat 1 39 0 353 155 31 10 chr15 58190107 58190204 -43190317 + (TA)n Simple_repeat Simple_repeat 1 99 0 240 111 0 0 chr15 58190211 58190247 -43190274 + (TG)n Simple_repeat Simple_repeat 2 37 0 1796 120 3 95 chr15 58190248 58190564 -43189957 - AluSq SINE Alu -26 287 1 336 294 54 0 chr15 58190756 58190848 -43189673 + MIR SINE MIR 30 126 -82 484 316 34 39 chr15 58191987 58192136 -43188385 + MIR SINE MIR 10 159 -103 1977 195 95 50 chr15 58192136 58192619 -43187902 - MLT1D LTR MaLR 0 505 1 484 316 34 39 chr15 58192619 58192703 -43187818 + MIR SINE MIR 159 242 -20 307 357 78 13 chr15 58192944 58193098 -43187423 - MIR SINE MIR -79 183 20 690 186 161 0 chr15 58193339 58193500 -43187021 - MER5A DNA MER1_type 0 189 3 23 0 0 0 chr15 58195047 58195070 -43185451 + AT_rich Low_complexity Low_complexity 1 23 0 749 283 87 4 chr15 58195100 58195330 -43185191 - MIR SINE MIR -10 252 4 1000 142 76 46 chr15 58195678 58195875 -43184646 - AluJb SINE Alu -29 283 81 220 224 86 17 chr15 58195950 58196008 -43184513 - MER5A DNA MER1_type -84 105 44 182 294 129 73 chr15 58196128 58196414 -43184107 + L2 LINE L2 2950 3251 -21 695 289 101 9 chr15 58196783 58197011 -43183510 - MIR SINE MIR -6 256 8 1518 199 0 33 chr15 58197430 58197736 -43182785 + AluJb SINE Alu 1 296 -16 328 320 25 25 chr15 58197739 58197861 -43182660 - MIR3 SINE MIR -73 135 14 807 164 0 57 chr15 58198478 58198618 -43181903 - FLAM_C SINE Alu 0 133 2 399 254 154 30 chr15 58198656 58198825 -43181696 + MIR SINE MIR 73 262 0 213 39 0 0 chr15 58199632 58199658 -43180863 + (TAAAAA)n Simple_repeat Simple_repeat 5 30 0 217 257 0 43 chr15 58199660 58199675 -43180846 + GA-rich Low_complexity Low_complexity 3 17 -52 2075 127 3 34 chr15 58199675 58199997 -43180524 + AluSx SINE Alu 1 312 0 217 257 0 43 chr15 58199997 58200051 -43180470 + GA-rich Low_complexity Low_complexity 17 69 0 2185 173 124 15 chr15 58201185 58201653 -43178868 + Charlie1b DNA MER1_type 1 519 -4 2113 122 3 25 chr15 58201860 58202179 -43178342 + AluSx SINE Alu 1 312 0 481 274 58 98 chr15 58202524 58202801 -43177720 + L2 LINE L2 2980 3245 -27 2274 114 0 16 chr15 58202822 58203130 -43177391 + AluSx SINE Alu 1 303 -9 198 0 0 0 chr15 58203686 58203708 -43176813 + (A)n Simple_repeat Simple_repeat 1 22 0 339 301 66 36 chr15 58204169 58204335 -43176186 - MIR3 SINE MIR -2 206 36 261 139 23 0 chr15 58204625 58204668 -43175853 + L1MD3 LINE L1 7212 7255 -740 2127 221 46 39 chr15 58204677 58205244 -43175277 + L1MD3 LINE L1 7404 7974 -21 2193 121 10 0 chr15 58205259 58205564 -43174957 + AluSq SINE Alu 1 308 -5 225 352 0 19 chr15 58206285 58206393 -43174128 + L2 LINE L2 2945 3050 -222 302 306 40 16 chr15 58206563 58206687 -43173834 + L2 LINE L2 3182 3308 -5 1766 169 16 22 chr15 58206708 58207022 -43173499 + AluJo SINE Alu 1 312 0 180 310 23 11 chr15 58207899 58207986 -43172535 + L2 LINE L2 2943 3030 -242 255 267 0 17 chr15 58208299 58208359 -43172162 - MER5A DNA MER1_type -2 187 129 2333 120 0 0 chr15 58208364 58208673 -43171848 + AluSx SINE Alu 1 309 -3 1045 164 45 41 chr15 58210200 58210420 -43170101 - MER58A DNA MER1_type -2 222 2 38 39 0 0 chr15 58210623 58210675 -43169846 + AT_rich Low_complexity Low_complexity 1 52 0 2504 85 0 0 chr15 58211581 58211888 -43168633 + AluY SINE Alu 1 307 -4 272 206 85 109 chr15 58211904 58212069 -43168452 + L1ME3 LINE L1 5693 5853 -1955 1406 160 66 21 chr15 58212494 58212781 -43167740 + AluJb SINE Alu 11 310 -2 22 35 0 0 chr15 58212854 58212883 -43167638 + AT_rich Low_complexity Low_complexity 1 29 0 212 331 61 34 chr15 58213167 58213315 -43167206 + MIR SINE MIR 111 262 0 320 271 69 64 chr15 58214765 58214953 -43165568 + MIR SINE MIR 47 235 -27 496 257 7 21 chr15 58215512 58215656 -43164865 + MLT1K LTR MaLR 446 587 -1 314 247 49 0 chr15 58215731 58215812 -43164709 - MIR SINE MIR -56 152 68 2016 80 0 19 chr15 58216283 58216546 -43163975 + AluSg SINE Alu 1 258 -52 600 297 46 5 chr15 58216774 58216969 -43163552 + MIR SINE MIR 21 223 -39 190 281 0 53 chr15 58218018 58218075 -43162446 - MIR SINE MIR -76 132 79 273 122 0 0 chr15 58218075 58218116 -43162405 + MADE1 DNA Mariner 40 80 0 870 183 17 6 chr15 58220061 58220241 -43160280 + MER96B DNA MER1_type? 1 182 -235 2304 93 0 13 chr15 58224016 58224316 -43156205 - AluSg SINE Alu -14 296 1 247 276 0 26 chr15 58224336 58224412 -43156109 - MER5A DNA MER1_type -30 159 86 379 345 34 19 chr15 58224572 58224781 -43155740 + L1MEd LINE L1 244 455 -5664 401 295 59 62 chr15 58224895 58225217 -43155304 + L1MEd LINE L1 627 947 -5172 868 216 60 6 chr15 58225229 58225448 -43155073 + L1ME3 LINE L1 5889 6281 -53 445 274 136 33 chr15 58225465 58225880 -43154641 + L1MEd LINE L1 954 1510 -980 188 154 154 0 chr15 58226002 58226041 -43154480 - L2 LINE L2 -1 3271 3227 247 301 14 0 chr15 58226166 58226239 -43154282 - L2 LINE L2 -213 3059 2986 481 267 8 0 chr15 58226242 58226362 -43154159 + L2 LINE L2 3152 3272 0 190 311 140 57 chr15 58226421 58226685 -43153836 - L2 LINE L2 -352 2962 2677 203 161 0 0 chr15 58228250 58228281 -43152240 + polypurine Low_complexity Low_complexity 2 32 0 250 301 44 26 chr15 58228394 58228507 -43152014 - L2 LINE L2 -15 3257 3143 227 167 0 0 chr15 58229066 58229108 -43151413 + L1MC4 LINE L1 6662 6703 -1339 263 196 0 0 chr15 58229132 58229188 -43151333 - MER4-int LTR ERV1 -5436 1162 1107 1844 208 24 10 chr15 58230163 58230576 -43149945 + L1MB8 LINE L1 5747 6165 -13 429 264 98 23 chr15 58230633 58230807 -43149714 - MIR3 SINE MIR -1 207 21 606 163 0 10 chr15 58231526 58231624 -43148897 + MLT1A2 LTR MaLR 1 97 -277 587 124 0 11 chr15 58231608 58231697 -43148824 + MLT1A2 LTR MaLR 287 374 0 * 225 200 0 0 chr15 58233267 58233312 -43147209 + A-rich Low_complexity Low_complexity 1 45 0 2223 107 27 0 chr15 58234402 58234700 -43145821 - AluSx SINE Alu -6 306 1 222 279 16 0 chr15 58235802 58235863 -43144658 + L2 LINE L2 3249 3310 -3 2405 50 3 60 chr15 58236872 58237191 -43143330 - AluY SINE Alu -10 301 1 269 169 0 31 chr15 58237642 58237707 -43142814 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 215 297 44 11 chr15 58238805 58238896 -43141625 - MIR SINE MIR -134 128 35 473 214 103 0 chr15 58239612 58239729 -43140792 + L2 LINE L2 3185 3313 0 300 27 0 0 chr15 58240180 58240217 -43140304 + (TG)n Simple_repeat Simple_repeat 2 38 0 557 272 76 41 chr15 58240516 58240683 -43139838 - L1ME4a LINE L1 -2 6119 5959 324 0 0 0 chr15 58240683 58240719 -43139802 + (CA)n Simple_repeat Simple_repeat 1 36 0 557 272 76 41 chr15 58240719 58240867 -43139654 - L1ME4a LINE L1 -162 5959 5793 22 0 0 0 chr15 58241141 58241163 -43139358 + AT_rich Low_complexity Low_complexity 1 22 0 2336 76 0 13 chr15 58241301 58241603 -43138918 + AluY SINE Alu 1 298 -13 342 315 123 8 chr15 58241675 58241805 -43138716 + MIR3 SINE MIR 45 189 -19 423 208 0 0 chr15 58243884 58243956 -43136565 + FLAM_A SINE Alu 1 72 -70 2156 122 3 7 chr15 58245041 58245345 -43135176 + AluSx SINE Alu 2 304 -8 23 33 0 0 chr15 58245908 58245938 -43134583 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr15 58247223 58247244 -43133277 + AT_rich Low_complexity Low_complexity 1 21 0 1248 94 13 0 chr15 58349546 58349705 -43030816 + AluSq SINE Alu 89 249 -64 337 256 54 18 chr15 58349705 58349873 -43030648 - MER104 DNA MER2_type -4 176 3 252 286 18 62 chr15 58350035 58350147 -43030374 - MIR SINE MIR -76 186 80 346 326 104 0 chr15 58351938 58352073 -43028448 + MIR3 SINE MIR 4 152 -56 2011 160 0 0 chr15 58352358 58352664 -43027857 - AluJo SINE Alu -6 306 1 181 340 0 0 chr15 58353033 58353080 -43027441 - L2 LINE L2 -4 3268 3222 645 227 65 32 chr15 58353162 58353409 -43027112 - MER112 DNA MER1_type -1 255 1 433 284 116 32 chr15 58353597 58353787 -43026734 + L2 LINE L2 1974 2179 -1135 347 282 67 67 chr15 58354697 58354735 -43025786 + MIR SINE MIR 66 103 -159 1726 165 16 30 chr15 58354735 58355038 -43025483 - AluJo SINE Alu -5 307 9 347 282 67 67 chr15 58355038 58355148 -43025373 + MIR SINE MIR 102 214 -48 212 375 39 10 chr15 58355207 58355311 -43025210 + MIR SINE MIR 108 214 -48 636 153 81 18 chr15 58356994 58357105 -43023416 - FLAM_C SINE Alu -15 118 1 2646 55 0 0 chr15 58357745 58358056 -43022465 - AluY SINE Alu 0 311 1 308 309 82 21 chr15 58358418 58358612 -43021909 + L2 LINE L2 2634 2839 -475 309 205 26 39 chr15 58358807 58358885 -43021636 - MLT1J LTR MaLR -60 451 375 243 146 0 0 chr15 58359353 58359394 -43021127 + (TG)n Simple_repeat Simple_repeat 2 42 0 1095 149 0 12 chr15 58359607 58359775 -43020746 + FRAM SINE Alu 1 165 -11 1924 124 50 14 chr15 58360041 58360324 -43020197 + AluSx SINE Alu 1 293 -19 225 225 14 42 chr15 58361226 58361297 -43019224 + MER46A DNA MER2_type 101 169 -67 675 301 27 11 chr15 58361307 58361493 -43019028 - MIR SINE MIR -29 233 45 225 0 0 0 chr15 58361890 58361915 -43018606 + (TAAAG)n Simple_repeat Simple_repeat 1 25 0 210 22 0 87 chr15 58362962 58363008 -43017513 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 197 222 0 37 chr15 58363504 58363558 -43016963 + MIR SINE MIR 211 262 0 322 308 60 23 chr15 58363698 58363831 -43016690 + MIR SINE MIR 47 184 -78 1778 190 85 3 chr15 58364098 58364461 -43016060 - MLT2C1 LTR ERVL 0 397 5 2143 110 0 7 chr15 58364862 58365161 -43015360 + AluSg SINE Alu 1 297 -13 388 54 89 0 chr15 58365915 58365971 -43014550 - L1PA7 LINE L1 0 6154 6094 214 268 41 62 chr15 58367455 58367552 -43012969 - MIR SINE MIR -81 181 87 305 281 85 89 chr15 58368324 58368605 -43011916 - L1M2 LINE L1 -5716 1133 854 1231 208 65 0 chr15 58368864 58369109 -43011412 - MER39 LTR ERV1 -446 261 1 466 271 23 16 chr15 58369443 58369572 -43010949 + MIR SINE MIR 20 149 -113 273 146 0 0 chr15 58370194 58370235 -43010286 + MER5A DNA MER1_type 149 189 0 207 0 0 0 chr15 58370367 58370390 -43010131 + (ATG)n Simple_repeat Simple_repeat 3 25 0 369 0 0 0 chr15 58370390 58370431 -43010090 + (TG)n Simple_repeat Simple_repeat 2 42 0 822 122 0 0 chr15 58370906 58371013 -43009508 + U6 snRNA snRNA 1 107 0 1693 193 84 0 chr15 58371014 58371372 -43009149 + L1 LINE L1 4639 5026 -1120 700 201 30 8 chr15 58371472 58371606 -43008915 + AluYb8 SINE Alu 177 313 -5 364 330 28 0 chr15 58371736 58371845 -43008676 + L2 LINE L2 3201 3312 -1 2251 106 3 3 chr15 58372644 58372945 -43007576 + AluSc SINE Alu 1 301 -8 210 216 0 0 chr15 58373157 58373208 -43007313 - L2 LINE L2 -2 3311 3261 21 0 0 0 chr15 58373576 58373597 -43006924 + AT_rich Low_complexity Low_complexity 1 21 0 1886 120 4 11 chr15 58374842 58375116 -43005405 + AluSx SINE Alu 1 272 -40 393 274 103 0 chr15 58375216 58375333 -43005188 - MLT1J LTR MaLR -291 220 92 2072 122 11 45 chr15 58375426 58375802 -43004719 + L1MA2 LINE L1 5942 6304 0 209 306 116 74 chr15 58378455 58378576 -43001945 - L2 LINE L2 0 3272 3147 2203 110 0 0 chr15 58378801 58379118 -43001403 - AluSx SINE Alu 0 318 2 1819 149 35 0 chr15 58379537 58379826 -43000695 - AluJo SINE Alu -13 299 1 666 299 99 43 chr15 58380099 58380497 -43000024 + L2 LINE L2 2793 3167 -146 3495 156 25 3 chr15 58380497 58381062 -42999459 - L1PA16 LINE L1 -3 6163 5587 666 299 99 43 chr15 58381062 58381131 -42999390 + L2 LINE L2 3167 3231 -82 1252 198 99 37 chr15 58381131 58381455 -42999066 - MER2 DNA MER2_type 0 344 1 666 299 99 43 chr15 58381455 58381490 -42999031 + L2 LINE L2 3231 3313 0 31 26 0 0 chr15 58382217 58382255 -42998266 + AT_rich Low_complexity Low_complexity 1 38 0 2219 92 0 0 chr15 58382806 58383087 -42997434 - AluSx SINE Alu -2 310 30 255 342 107 37 chr15 58383408 58383706 -42996815 - MLT1K LTR MaLR -236 352 34 776 159 0 0 chr15 58383812 58383919 -42996602 - FLAM_A SINE Alu -35 107 1 1643 140 0 0 chr15 58384659 58384895 -42995626 + AluSg/x SINE Alu 75 310 0 627 239 174 0 chr15 58386443 58386644 -42993877 + MIR SINE MIR 11 246 -16 374 261 148 7 chr15 58386989 58387131 -42993390 + MIR SINE MIR 31 192 -70 2211 123 3 0 chr15 58388451 58388761 -42991760 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr15 58388798 58388819 -42991702 + AT_rich Low_complexity Low_complexity 1 21 0 2133 170 52 44 chr15 58389059 58389554 -42990967 - L1MB8 LINE L1 0 6178 5680 1955 112 54 0 chr15 58389599 58389875 -42990646 + AluSx SINE Alu 6 296 -16 454 300 158 34 chr15 58389878 58390407 -42990114 - L1 LINE L1 -1527 4619 4026 2050 135 3 7 chr15 58390490 58390786 -42989735 + AluSx SINE Alu 1 295 -17 2495 63 0 0 chr15 58390786 58391085 -42989436 + AluY SINE Alu 1 299 -12 21 71 0 0 chr15 58391085 58391127 -42989394 + AT_rich Low_complexity Low_complexity 1 42 0 1268 133 15 15 chr15 58391307 58391510 -42989011 - THE1B LTR MaLR -161 203 1 1621 181 64 39 chr15 58391763 58391956 -42988565 - MLT1A2 LTR MaLR -5 369 161 2088 104 30 3 chr15 58391956 58392254 -42988267 - AluSc SINE Alu -3 306 1 1621 181 64 39 chr15 58392254 58392420 -42988101 - MLT1A2 LTR MaLR -213 161 1 665 136 0 18 chr15 58393552 58393662 -42986859 + FLAM_A SINE Alu 30 137 -5 2492 76 0 0 chr15 58393692 58393996 -42986525 + AluSc SINE Alu 1 304 -5 5508 118 52 16 chr15 58395384 58396041 -42984480 + L1PB4 LINE L1 5082 5928 -375 2255 94 0 7 chr15 58396041 58396376 -42984145 - AluSq SINE Alu 0 333 1 5508 118 52 16 chr15 58396376 58396758 -42983763 + L1PB4 LINE L1 5928 6295 -8 210 150 0 0 chr15 58396758 58396798 -42983723 + (TA)n Simple_repeat Simple_repeat 1 40 0 206 313 134 40 chr15 58397130 58397331 -42983190 - L2 LINE L2 -217 3055 2836 477 0 0 0 chr15 58397503 58397556 -42982965 + (TG)n Simple_repeat Simple_repeat 2 54 0 369 284 198 15 chr15 58397577 58397628 -42982893 + MIR SINE MIR 2 42 -220 1397 179 114 26 chr15 58397628 58397901 -42982620 + AluJo SINE Alu 1 297 -5 369 284 198 15 chr15 58397901 58398046 -42982475 + MIR SINE MIR 42 234 -28 214 246 35 0 chr15 58398612 58398669 -42981852 + L2 LINE L2 3250 3308 -5 872 213 0 0 chr15 58398782 58398937 -42981584 + FRAM SINE Alu 5 159 -17 213 132 0 0 chr15 58400383 58400421 -42980100 + (TCC)n Simple_repeat Simple_repeat 3 40 0 2260 105 3 13 chr15 58400421 58400736 -42979785 - AluSx SINE Alu 0 312 1 468 359 47 35 chr15 58400740 58401246 -42979275 + L2 LINE L2 2044 2558 -756 3747 127 19 11 chr15 58401246 58401814 -42978707 - L1PA16 LINE L1 0 6166 5594 468 359 47 35 chr15 58401814 58401845 -42978676 + L2 LINE L2 2558 2587 -727 231 256 45 126 chr15 58402027 58402250 -42978271 + L2 LINE L2 2886 3090 -182 199 137 59 78 chr15 58402427 58402478 -42978043 - MIR SINE MIR -2 260 211 1559 154 12 15 chr15 58402570 58402829 -42977692 - AluJo SINE Alu -2 310 53 2325 86 0 20 chr15 58402842 58403144 -42977377 - AluSg SINE Alu -12 298 3 2197 135 0 6 chr15 58403155 58403467 -42977054 - AluSx SINE Alu -2 310 1 1494 187 39 16 chr15 58403468 58403778 -42976743 - L1MB7 LINE L1 -8 6176 5860 570 193 0 20 chr15 58403781 58403931 -42976590 + CT-rich Low_complexity Low_complexity 4 150 0 920 175 7 26 chr15 58403939 58404093 -42976428 - FRAM SINE Alu -15 151 1 844 207 32 65 chr15 58404096 58404342 -42976179 - L1MD1 LINE L1 -369 5873 5636 1515 250 170 39 chr15 58404393 58405110 -42975411 + L1M4 LINE L1 65 875 -5667 1033 154 6 34 chr15 58405155 58405283 -42975238 + MER2 DNA MER2_type 3 126 -219 1781 185 3 10 chr15 58405283 58405585 -42974936 - AluJb SINE Alu -12 300 1 1033 154 6 34 chr15 58405585 58405627 -42974894 + MER2 DNA MER2_type 126 168 -177 2120 150 7 78 chr15 58405627 58405892 -42974629 + Tigger2 DNA MER2_type 1 225 -2493 1823 108 10 61 chr15 58405892 58406187 -42974334 + AluSx SINE Alu 11 290 -22 2120 150 7 78 chr15 58406187 58406354 -42974167 + Tigger2 DNA MER2_type 225 402 -2316 4897 268 36 46 chr15 58406388 58406413 -42974108 + L1M4 LINE L1 2436 2460 -4184 21 0 0 0 chr15 58406413 58406434 -42974087 + AT_rich Low_complexity Low_complexity 1 21 0 4897 268 36 46 chr15 58406434 58407340 -42973181 + L1M4 LINE L1 2460 3374 -3270 2418 75 0 0 chr15 58407340 58407632 -42972889 - AluY SINE Alu -19 292 1 4897 268 36 46 chr15 58407632 58408436 -42972085 + L1M4 LINE L1 3374 4185 -2459 189 0 0 0 chr15 58408436 58408457 -42972064 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 4897 268 36 46 chr15 58408457 58408861 -42971660 + L1M4 LINE L1 4185 4566 -2078 2144 97 28 7 chr15 58408861 58409150 -42971371 + AluSg1 SINE Alu 5 299 -10 4897 268 36 46 chr15 58409150 58409249 -42971272 + L1M4 LINE L1 4566 4665 -1979 321 290 21 11 chr15 58409309 58409402 -42971119 + MIR SINE MIR 58 151 -57 199 331 130 43 chr15 58410755 58411009 -42969512 - L2 LINE L2 -131 3141 2866 329 308 21 56 chr15 58411052 58411195 -42969326 + L2 LINE L2 3132 3269 -3 190 246 123 0 chr15 58411982 58412039 -42968482 + MIR SINE MIR 117 180 -82 2796 166 22 13 chr15 58412095 58412588 -42967933 - L1MB3 LINE L1 -8 6175 5675 2360 110 0 0 chr15 58412588 58412898 -42967623 - AluSg SINE Alu 0 310 1 2796 166 22 13 chr15 58412898 58412946 -42967575 - L1MB3 LINE L1 -508 5675 5629 641 331 70 7 chr15 58413711 58414013 -42966508 - L3 LINE CR1 -275 1302 982 2155 144 59 30 chr15 58414031 58414548 -42965973 + MLT2A2 LTR ERVL 1 554 0 2175 119 7 0 chr15 58414684 58414986 -42965535 - AluSq SINE Alu -9 304 1 285 192 80 113 chr15 58415071 58415222 -42965299 - MIR SINE MIR 0 262 117 398 362 172 13 chr15 58415293 58415823 -42964698 - L3 LINE CR1 -889 688 75 2481 69 0 10 chr15 58416142 58416446 -42964075 - AluY SINE Alu -2 309 9 336 299 37 0 chr15 58417288 58417395 -42963126 + MIR3 SINE MIR 53 163 -45 470 259 30 44 chr15 58417555 58417690 -42962831 - MIR SINE MIR -121 141 9 449 306 166 5 chr15 58417728 58417927 -42962594 - MIR SINE MIR -6 256 26 210 91 0 0 chr15 58418887 58418920 -42961601 + (GA)n Simple_repeat Simple_repeat 1 33 0 189 0 0 0 chr15 58420956 58420977 -42959544 + (T)n Simple_repeat Simple_repeat 1 21 0 423 0 0 0 chr15 58422550 58422597 -42957924 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 319 283 30 10 chr15 58422948 58423047 -42957474 - MER5B DNA MER1_type -6 172 72 269 269 179 37 chr15 58423141 58423275 -42957246 + MIR SINE MIR 2 154 -108 1699 171 20 7 chr15 58423626 58423918 -42956603 - AluJo SINE Alu -11 301 6 266 252 136 4 chr15 58425846 58425974 -42954547 - MIR3 SINE MIR -28 180 29 2106 129 0 10 chr15 58426051 58426362 -42954159 + AluSg SINE Alu 1 308 -2 25 75 0 0 chr15 58427293 58427346 -42953175 + AT_rich Low_complexity Low_complexity 1 53 0 2119 116 17 10 chr15 58427378 58427680 -42952841 - AluSg SINE Alu -5 305 2 393 310 0 6 chr15 58428902 58429060 -42951461 + L1MC4a LINE L1 5750 5906 -1902 2363 157 34 5 chr15 58429380 58429793 -42950728 - MSTB LTR MaLR -1 425 1 605 236 208 0 chr15 58429980 58430196 -42950325 + MIR SINE MIR 2 262 0 2210 98 0 0 chr15 58430479 58430791 -42949730 - AluSg SINE Alu 0 315 4 382 292 156 0 chr15 58431328 58431482 -42949039 + MIR3 SINE MIR 31 208 0 698 257 23 0 chr15 58431519 58431690 -42948831 + MER63A DNA MER1_type 1 175 -35 423 0 0 0 chr15 58432469 58432516 -42948005 + (TA)n Simple_repeat Simple_repeat 1 47 0 1919 133 39 0 chr15 58432517 58432796 -42947725 - AluSx SINE Alu -22 290 1 187 325 241 0 chr15 58433522 58433605 -42946916 + L2 LINE L2 3141 3243 -29 295 301 0 21 chr15 58433630 58433723 -42946798 - MIR SINE MIR -4 258 168 302 256 33 22 chr15 58434374 58434464 -42946057 - L3b LINE CR1 -178 1405 1315 203 59 0 29 chr15 58434723 58434757 -42945764 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 473 290 74 11 chr15 58435891 58436067 -42944454 + MIR SINE MIR 47 233 -29 1212 69 0 13 chr15 58436109 58436268 -42944253 - L1PA10 LINE L1 -13 6155 5999 226 240 0 0 chr15 58437814 58437864 -42942657 - MIR SINE MIR -141 121 72 2106 126 0 0 chr15 58439331 58439617 -42940904 - AluJb SINE Alu -26 286 1 431 250 0 0 chr15 58439828 58439932 -42940589 + U13 snRNA snRNA 1 104 0 465 202 19 0 chr15 58440914 58441018 -42939503 + MLT1C LTR MaLR 1 106 -361 1919 172 27 0 chr15 58441658 58441996 -42938525 + MER7A DNA MER2_type 1 345 -1 30 27 0 0 chr15 58442791 58442828 -42937693 + AT_rich Low_complexity Low_complexity 1 37 0 392 325 136 18 chr15 58443117 58443508 -42937013 + L2 LINE L2 1860 2296 -1018 347 295 72 30 chr15 58443510 58443676 -42936845 + L2 LINE L2 2467 2639 -675 342 350 58 25 chr15 58443688 58443931 -42936590 + L2 LINE L2 2288 2538 -776 241 280 68 68 chr15 58443968 58444086 -42936435 + L2 LINE L2 3141 3258 -14 372 210 0 0 chr15 58444122 58444203 -42936318 + (TA)n Simple_repeat Simple_repeat 2 82 0 2276 188 47 26 chr15 58445034 58445463 -42935058 + MLT1D LTR MaLR 1 444 -61 2418 53 3 0 chr15 58445463 58445766 -42934755 + AluY SINE Alu 1 304 0 2276 188 47 26 chr15 58445766 58445830 -42934691 + MLT1D LTR MaLR 444 505 0 619 281 46 40 chr15 58445963 58446214 -42934307 - MIR SINE MIR 0 262 13 354 231 39 0 chr15 58446301 58446405 -42934116 + MLT1D LTR MaLR 1 108 -397 184 306 0 0 chr15 58446682 58446718 -42933803 + L2 LINE L2 3147 3182 -90 241 361 120 0 chr15 58448380 58448513 -42932008 - MIR SINE MIR -62 200 52 696 222 57 0 chr15 58448679 58448873 -42931648 + MER3 DNA MER1_type 1 205 -4 263 397 33 0 chr15 58448890 58449011 -42931510 - L3 LINE CR1 -20 1557 1433 198 337 76 11 chr15 58449796 58449888 -42930633 + L3 LINE CR1 444 541 -1036 341 289 0 33 chr15 58451291 58451381 -42929140 + MIR SINE MIR 15 101 -161 1764 194 0 9 chr15 58452123 58452438 -42928083 + AluSx SINE Alu 1 312 0 302 336 72 32 chr15 58453772 58453897 -42926624 - L2 LINE L2 0 3313 3184 1655 189 112 26 chr15 58454772 58455228 -42925293 - MLT1D LTR MaLR -9 496 2 501 259 19 9 chr15 58455244 58455406 -42925115 - MIR SINE MIR -7 255 47 200 268 0 0 chr15 58456180 58456221 -42924300 + MIR SINE MIR 114 154 -108 1080 294 34 98 chr15 58456366 58457357 -42923164 - L2 LINE L2 -18 3254 2334 347 0 23 0 chr15 58460595 58460638 -42919883 + (TG)n Simple_repeat Simple_repeat 2 45 0 2595 186 15 4 chr15 58460952 58461494 -42919027 + L1MB7 LINE L1 5591 6138 -46 673 263 78 0 chr15 58461509 58461741 -42918780 - L1M4 LINE L1 -2268 3878 3629 204 284 0 0 chr15 58462017 58462112 -42918409 + GA-rich Low_complexity Low_complexity 1 95 0 1545 198 83 0 chr15 58462426 58462714 -42917807 + AluJo SINE Alu 1 312 0 208 87 0 43 chr15 58462831 58462877 -42917644 + (GGA)n Simple_repeat Simple_repeat 2 45 0 569 329 176 30 chr15 58462990 58463753 -42916768 + L2 LINE L2 2209 3066 -206 401 279 57 29 chr15 58464261 58464401 -42916120 + L2 LINE L2 3129 3272 0 1979 110 0 79 chr15 58464641 58464958 -42915563 + AluSx SINE Alu 1 292 -20 218 385 39 0 chr15 58465240 58465318 -42915203 + L3 LINE CR1 227 307 -1270 22 0 0 0 chr15 58465359 58465381 -42915140 + AT_rich Low_complexity Low_complexity 1 22 0 385 105 40 0 chr15 58466161 58466237 -42914284 + L1PA15 LINE L1 6087 6165 0 382 296 92 29 chr15 58466562 58466941 -42913580 + HAL1b LINE L1 68 470 -878 272 232 39 78 chr15 58467202 58467535 -42912986 - L1M4 LINE L1 -2153 3993 3664 26 30 0 0 chr15 58467680 58467713 -42912808 + AT_rich Low_complexity Low_complexity 1 33 0 1417 136 17 13 chr15 58467816 58467893 -42912628 - MER46A DNA MER2_type -2495 236 161 1608 178 71 3 chr15 58467893 58468219 -42912302 + MER7A DNA MER2_type 1 346 0 1417 136 17 13 chr15 58468219 58468376 -42912145 - MER46A DNA MER2_type -2570 161 1 313 311 0 19 chr15 58468447 58468550 -42911971 - L1M4 LINE L1 -2842 3304 3204 297 330 113 43 chr15 58468686 58468968 -42911553 + L3 LINE CR1 452 753 -824 632 231 24 47 chr15 58469005 58469174 -42911347 - MER91B DNA MER1_type -12 178 14 7770 212 67 29 chr15 58469283 58472978 -42907543 + L1MD1 LINE L1 2407 6242 0 21 0 0 0 chr15 58472978 58472999 -42907522 + AT_rich Low_complexity Low_complexity 1 21 0 409 266 112 18 chr15 58474697 58474866 -42905655 - MIR3 SINE MIR -1 207 23 973 104 11 27 chr15 58475141 58475254 -42905267 + (TTTC)n Simple_repeat Simple_repeat 1 291 0 973 104 11 27 chr15 58475254 58475437 -42905084 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 23 0 0 0 chr15 58475650 58475673 -42904848 + AT_rich Low_complexity Low_complexity 1 23 0 218 245 38 19 chr15 58475673 58475726 -42904795 + MER5B DNA MER1_type 54 107 -71 645 217 130 0 chr15 58475736 58475895 -42904626 + MER5A DNA MER1_type 1 183 -6 27 0 0 0 chr15 58476128 58476155 -42904366 + AT_rich Low_complexity Low_complexity 1 27 0 1597 215 79 76 chr15 58477747 58478288 -42902233 + LTR48B LTR ERV1 1 546 -98 2020 147 132 8 chr15 58478288 58478668 -42901853 + MSTA LTR MaLR 2 428 0 1597 215 79 76 chr15 58478668 58478768 -42901753 + LTR48B LTR ERV1 546 644 0 603 237 96 0 chr15 58478768 58478945 -42901576 - L1ME3A LINE L1 -59 6111 5918 239 0 32 0 chr15 58479753 58479784 -42900737 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr15 58479802 58479831 -42900690 + AT_rich Low_complexity Low_complexity 1 29 0 1700 174 25 11 chr15 58479831 58480113 -42900408 - AluJb SINE Alu -26 286 1 2284 102 0 0 chr15 58481184 58481478 -42899043 + AluSq SINE Alu 1 294 -19 877 102 8 0 chr15 58482257 58482401 -42898120 - FLAM_C SINE Alu 0 145 1 234 325 94 17 chr15 58482586 58482703 -42897818 + L2 LINE L2 2921 3046 -226 2210 101 16 10 chr15 58482807 58483113 -42897408 - AluSx SINE Alu -4 308 1 22 35 0 0 chr15 58483143 58483172 -42897349 + AT_rich Low_complexity Low_complexity 1 29 0 1889 200 58 40 chr15 58483273 58483769 -42896752 - MLT1D LTR MaLR 0 505 1 1505 158 3 89 chr15 58483837 58484153 -42896368 - AluJo SINE Alu -23 289 1 337 282 47 13 chr15 58484208 58484357 -42896164 - L1MC4a LINE L1 -1911 5897 5744 2105 90 10 14 chr15 58484377 58484666 -42895855 - AluSq SINE Alu -13 300 13 185 65 32 0 chr15 58484990 58485021 -42895500 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2358 91 3 0 chr15 58485166 58485462 -42895059 - AluSx SINE Alu -15 297 1 3992 168 45 8 chr15 58485828 58486815 -42893706 + L1MB8 LINE L1 5140 6167 -11 287 248 41 16 chr15 58487866 58487987 -42892534 + L2 LINE L2 2815 2938 -375 892 176 11 11 chr15 58488169 58488355 -42892166 - MLT1D LTR MaLR 0 505 320 2004 181 99 36 chr15 58488355 58488942 -42891579 - LTR48B LTR ERV1 0 644 21 1359 160 48 65 chr15 58488952 58489289 -42891232 - MLT1D LTR MaLR -174 331 1 2348 117 3 0 chr15 58490227 58490536 -42889985 + AluSg SINE Alu 1 310 0 1378 216 116 16 chr15 58490759 58491199 -42889322 + LTR48B LTR ERV1 1 484 -160 278 211 66 26 chr15 58491212 58491288 -42889233 + MIR3 SINE MIR 125 203 -5 311 308 0 26 chr15 58491751 58491868 -42888653 + L1ME4a LINE L1 5799 5912 -209 263 284 62 86 chr15 58492036 58492198 -42888323 - L2 LINE L2 -4 3268 3111 501 335 51 19 chr15 58492429 58492799 -42887722 - L2 LINE L2 -1039 2275 1894 2034 152 3 3 chr15 58493283 58493593 -42886928 - AluJo SINE Alu -2 310 1 310 260 43 8 chr15 58593697 58593801 -42786720 - MIR SINE MIR -102 106 5 1272 184 73 35 chr15 58594044 58594332 -42786189 - AluJo SINE Alu -13 299 1 216 0 0 0 chr15 58594346 58594370 -42786151 + (TG)n Simple_repeat Simple_repeat 2 25 0 194 313 50 38 chr15 58594401 58594481 -42786040 - MIR SINE MIR -173 89 9 2783 10 0 0 chr15 58595718 58596019 -42784502 + AluY SINE Alu 1 301 -10 10466 34 5 0 chr15 58596227 58597506 -42783015 - L1P LINE L1 -3540 2606 1322 204 233 111 33 chr15 58597606 58597696 -42782825 + L2 LINE L2 3158 3254 -18 22 0 0 0 chr15 58599260 58599282 -42781239 + AT_rich Low_complexity Low_complexity 1 22 0 376 363 48 8 chr15 58599442 58599566 -42780955 + L2 LINE L2 3128 3256 -16 3789 93 25 6 chr15 58601342 58601892 -42778629 - L1PB3 LINE L1 0 6154 5594 1789 111 21 0 chr15 58601894 58602173 -42778348 - L1PB3 LINE L1 -616 5538 5254 222 324 0 14 chr15 58603000 58603074 -42777447 - MIR SINE MIR -100 108 36 200 260 70 110 chr15 58604457 58604475 -42776046 + L2 LINE L2 3190 3207 -106 2048 127 43 30 chr15 58604475 58604845 -42775676 - THE1C LTR MaLR 0 375 1 200 260 70 110 chr15 58604845 58604926 -42775595 + L2 LINE L2 3207 3285 -28 304 224 0 0 chr15 58605096 58605154 -42775367 - L2 LINE L2 -1 3312 3255 1022 249 45 13 chr15 58605241 58605571 -42774950 - L1ME3 LINE L1 -10 6152 5807 400 297 92 50 chr15 58606698 58607235 -42773286 + HAL1b LINE L1 61 1703 -770 1820 154 65 0 chr15 58607334 58607659 -42772862 + MER7A DNA MER2_type 3 346 0 252 0 0 0 chr15 58607773 58607801 -42772720 + (T)n Simple_repeat Simple_repeat 1 28 0 611 152 0 0 chr15 58608577 58608682 -42771839 - L1PB4 LINE L1 -12 6144 6040 1301 231 49 15 chr15 58610072 58610478 -42770043 + L1ME3A LINE L1 5746 6165 -5 2174 119 7 0 chr15 58610569 58610863 -42769658 - AluSx SINE Alu -14 298 3 21 36 0 0 chr15 58611119 58611147 -42769374 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr15 58611887 58611908 -42768613 + AT_rich Low_complexity Low_complexity 1 21 0 349 331 29 0 chr15 58612173 58612309 -42768212 + L2 LINE L2 2922 3061 -252 21 0 0 0 chr15 58612790 58612811 -42767710 + AT_rich Low_complexity Low_complexity 1 21 0 216 350 118 69 chr15 58612863 58613109 -42767412 + L2 LINE L2 2917 3174 -98 204 241 0 86 chr15 58613221 58613279 -42767242 + MIR SINE MIR 84 136 -126 368 330 0 18 chr15 58613369 58613478 -42767043 + L2 LINE L2 3201 3307 -6 290 296 46 19 chr15 58613445 58613553 -42766968 + MIR SINE MIR 152 262 0 * 446 163 0 12 chr15 58615218 58615298 -42765223 + MIR SINE MIR 90 168 -94 1512 116 0 5 chr15 58616245 58616452 -42764069 + AluSq SINE Alu 2 207 -106 1162 209 14 0 chr15 58616694 58616914 -42763607 - MER58A DNA MER1_type 0 224 2 354 289 27 80 chr15 58618395 58618620 -42761901 + MIR SINE MIR 49 261 -1 188 308 0 0 chr15 58618764 58618816 -42761705 - L2 LINE L2 -4 3268 3217 274 378 69 33 chr15 58618937 58619212 -42761309 - L2 LINE L2 -181 3091 2807 916 0 9 0 chr15 58619625 58619731 -42760790 - AluYa5/8 SINE Alu -203 107 1 1090 178 5 5 chr15 58619744 58619941 -42760580 - L1M3f LINE L1 -4621 707 511 349 316 170 19 chr15 58621037 58621243 -42759278 + MIR SINE MIR 22 258 -4 595 215 15 15 chr15 58621336 58621466 -42759055 + MIR SINE MIR 95 224 -38 522 272 17 58 chr15 58621906 58622079 -42758442 + MIR SINE MIR 40 205 -57 618 302 51 80 chr15 58622770 58623184 -42757337 + L1MB1 LINE L1 174 815 -5488 2736 252 51 12 chr15 58623353 58624414 -42756107 + L1MB1 LINE L1 777 1787 -4516 10952 176 48 21 chr15 58624444 58624813 -42755708 + L1MB1 LINE L1 2871 3229 -3175 1620 221 16 30 chr15 58624813 58625179 -42755342 - MLT1A1 LTR MaLR -2 363 3 10952 176 48 21 chr15 58625179 58628230 -42752291 + L1MB1 LINE L1 3229 6394 -10 374 261 155 56 chr15 58629978 58630139 -42750382 + MER5A DNA MER1_type 13 189 0 334 333 31 8 chr15 58630139 58630264 -42750257 + L2 LINE L2 3182 3309 -4 825 229 13 52 chr15 58631149 58631380 -42749141 - MIR SINE MIR -39 223 2 240 59 0 0 chr15 58632272 58632306 -42748215 + (CAT)n Simple_repeat Simple_repeat 2 35 0 497 254 63 8 chr15 58633859 58633985 -42746536 + MER5A DNA MER1_type 50 182 -7 2372 93 0 6 chr15 58634526 58634839 -42745682 + AluSx SINE Alu 1 311 -1 306 265 46 80 chr15 58635079 58635192 -42745329 + MIR SINE MIR 94 202 -60 2395 104 0 0 chr15 58635192 58635501 -42745020 + AluSg1 SINE Alu 1 309 0 306 265 46 80 chr15 58635501 58635538 -42744983 + MIR SINE MIR 202 239 -23 * 382 349 0 0 chr15 58635530 58635659 -42744862 - MIR SINE MIR -56 206 78 1932 142 0 30 chr15 58636441 58636759 -42743762 - AluJb SINE Alu 0 309 1 185 233 23 0 chr15 58636875 58636918 -42743603 - L2 LINE L2 -95 3218 3175 193 294 43 54 chr15 58637105 58637197 -42743324 + L3 LINE CR1 1483 1573 -4 644 305 129 9 chr15 58637481 58637714 -42742807 - MIR SINE MIR 0 262 2 438 306 194 0 chr15 58637755 58637951 -42742570 - MIR SINE MIR 0 262 29 188 288 68 51 chr15 58637957 58638075 -42742446 + MIR SINE MIR 53 172 -90 285 297 9 27 chr15 58639735 58639846 -42740675 - LTR16A1 LTR ERVL -348 109 1 931 187 61 0 chr15 58640006 58640204 -42740317 + MER20 DNA MER1_type 2 211 -8 2307 154 60 2 chr15 58640204 58640607 -42739914 - MSTB LTR MaLR 0 426 1 320 352 39 8 chr15 58641238 58641366 -42739155 - MIR SINE MIR -109 153 22 27 0 0 0 chr15 58641775 58641802 -42738719 + AT_rich Low_complexity Low_complexity 1 27 0 276 257 48 34 chr15 58642605 58642763 -42737758 + MIR SINE MIR 25 183 -79 670 196 26 0 chr15 58643035 58643188 -42737333 + MER53 DNA DNA 15 171 -18 320 319 103 0 chr15 58643458 58643574 -42736947 + L2 LINE L2 3137 3264 -8 290 273 182 41 chr15 58643670 58643890 -42736631 + L2 LINE L2 2237 2487 -827 239 254 0 15 chr15 58643935 58644002 -42736519 - MER5B DNA MER1_type -83 95 30 378 0 0 0 chr15 58644448 58644490 -42736031 + (TC)n Simple_repeat Simple_repeat 1 42 0 303 28 0 0 chr15 58644489 58644525 -42735996 + (CA)n Simple_repeat Simple_repeat 1 36 0 * 3388 29 0 0 chr15 58644633 58645079 -42735442 - L1P LINE L1 -2718 3428 2983 184 452 9 0 chr15 58645961 58646076 -42734445 + MIR SINE MIR 30 145 -63 372 341 47 33 chr15 58646161 58646388 -42734133 - MIR SINE MIR -13 249 15 895 274 167 35 chr15 58647497 58648007 -42732514 - L2 LINE L2 -1293 2021 1445 283 177 64 135 chr15 58648464 58648605 -42731916 - L2 LINE L2 0 3313 3183 270 294 92 37 chr15 58648858 58648967 -42731554 - L2 LINE L2 0 3272 3158 4995 110 7 5 chr15 58649135 58649879 -42730642 + L1PA13 LINE L1 5416 6160 -3 193 290 0 0 chr15 58649953 58650015 -42730506 + L2 LINE L2 2992 3053 -219 188 195 0 0 chr15 58650206 58650247 -42730274 + L2 LINE L2 3273 3313 0 308 207 0 37 chr15 58650407 58650489 -42730032 - L1ME4a LINE L1 -72 6049 5971 251 208 38 53 chr15 58650697 58650792 -42729729 + MIR3 SINE MIR 101 199 -9 193 351 0 0 chr15 58651911 58651968 -42728553 + MIR3 SINE MIR 100 156 -52 1311 201 70 32 chr15 58651991 58652275 -42728246 - AluJo SINE Alu -12 300 6 2230 75 4 4 chr15 58652285 58652605 -42727916 - AluY SINE Alu 0 320 1 566 201 130 0 chr15 58652617 58652801 -42727720 - L1MD3 LINE L1 0 7995 7788 2225 92 9 22 chr15 58653057 58653372 -42727149 + AluY SINE Alu 1 311 0 329 190 149 138 chr15 58653866 58654040 -42726481 - MIR SINE MIR -31 231 56 21 0 0 0 chr15 58654586 58654607 -42725914 + AT_rich Low_complexity Low_complexity 1 21 0 551 231 25 56 chr15 58655057 58655217 -42725304 + MIR SINE MIR 24 178 -84 4961 142 11 6 chr15 58655566 58656433 -42724088 + L1PA15 LINE L1 5279 6150 -15 844 314 63 42 chr15 58656476 58657036 -42723485 - L2 LINE L2 -226 3087 2492 282 29 0 0 chr15 58657036 58657071 -42723450 + (TG)n Simple_repeat Simple_repeat 2 36 0 844 314 63 42 chr15 58657071 58657120 -42723401 - L2 LINE L2 -821 2492 2446 221 258 81 16 chr15 58657329 58657391 -42723130 - L2 LINE L2 -8 3264 3199 401 369 87 36 chr15 58657543 58657901 -42722620 + L2 LINE L2 2896 3271 -1 252 150 0 0 chr15 58658088 58658128 -42722393 - 5S rRNA rRNA -81 40 1 6754 68 15 0 chr15 58658138 58659523 -42720998 + L1PA7 LINE L1 4756 6152 -2 200 233 17 0 chr15 58659531 58659591 -42720930 + A-rich Low_complexity Low_complexity 2 62 0 393 22 0 0 chr15 58659939 58659985 -42720536 + (CA)n Simple_repeat Simple_repeat 2 47 0 509 261 68 0 chr15 58660190 58660351 -42720170 + MER58B DNA MER1_type 170 341 0 1708 130 137 75 chr15 58661431 58661498 -42719023 - MSTA LTR MaLR 0 428 367 1433 90 5 5 chr15 58661498 58661686 -42718835 + L1PA8A LINE L1 5942 6129 -2 1708 130 137 75 chr15 58661686 58662019 -42718502 - MSTA LTR MaLR -61 367 3 891 222 32 16 chr15 58662077 58662262 -42718259 + MER5A DNA MER1_type 2 189 0 300 53 0 0 chr15 58662274 58662312 -42718209 + (CA)n Simple_repeat Simple_repeat 1 38 0 465 221 201 27 chr15 58662326 58662475 -42718046 + MER5B DNA MER1_type 4 178 0 593 245 80 6 chr15 58662788 58662951 -42717570 - MER5B DNA MER1_type -2 176 2 380 277 167 60 chr15 58662979 58663315 -42717206 + HAL1b LINE L1 171 542 -806 681 143 0 45 chr15 58663401 58663534 -42716987 - L1MB3 LINE L1 -279 5904 5778 1516 139 29 29 chr15 58663534 58663796 -42716725 + L1MB3 LINE L1 5908 6181 -2 615 238 94 6 chr15 58663869 58664029 -42716492 - MER5B DNA MER1_type -4 174 1 1293 173 4 31 chr15 58664675 58664900 -42715621 - MER20 DNA MER1_type 0 219 1 284 262 103 56 chr15 58665521 58665628 -42714893 + L2 LINE L2 3158 3269 -3 181 212 0 0 chr15 58665676 58665709 -42714812 + MIR SINE MIR 116 148 -60 258 198 160 66 chr15 58666018 58666124 -42714397 + L2 LINE L2 3197 3312 -1 2325 104 0 3 chr15 58666223 58666532 -42713989 + AluSg SINE Alu 2 309 -1 255 114 0 0 chr15 58666884 58666928 -42713593 + (A)n Simple_repeat Simple_repeat 1 44 0 195 350 145 8 chr15 58667216 58667333 -42713188 - L2 LINE L2 -3 3269 3137 375 264 73 0 chr15 58667455 58667565 -42712956 + MIR SINE MIR 66 183 -79 225 234 0 0 chr15 58667701 58667748 -42712773 + MIR SINE MIR 86 132 -76 1769 246 159 2 chr15 58667786 58668294 -42712227 - MLT1G1 LTR MaLR -7 588 1 402 21 0 0 chr15 58668319 58668366 -42712155 + (TAG)n Simple_repeat Simple_repeat 1 47 0 183 269 115 0 chr15 58668434 58668486 -42712035 - L2 LINE L2 -62 3210 3153 831 182 30 6 chr15 58668607 58668772 -42711749 - MER69A DNA AcHobo -8 169 1 286 259 119 49 chr15 58669213 58669599 -42710922 + L1ME4a LINE L1 5709 6121 0 214 267 17 17 chr15 58669611 58669671 -42710850 + L2 LINE L2 2994 3053 -219 217 258 146 0 chr15 58670156 58670245 -42710276 + MIR SINE MIR 147 248 -14 471 329 106 5 chr15 58670651 58670858 -42709663 - MIR SINE MIR -12 250 23 243 0 0 0 chr15 58671200 58671227 -42709294 + (T)n Simple_repeat Simple_repeat 1 27 0 2654 137 52 5 chr15 58672180 58672588 -42707933 + MSTA LTR MaLR 2 428 0 49 32 0 0 chr15 58673177 58673240 -42707281 + AT_rich Low_complexity Low_complexity 1 63 0 986 9 0 0 chr15 58673304 58673414 -42707107 - AluYb8 SINE Alu 0 318 209 222 37 0 0 chr15 58674367 58674394 -42706127 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 269 297 14 14 chr15 58674398 58674536 -42705985 - L1M4 LINE L1 -1534 4612 4475 263 275 96 54 chr15 58674873 58675208 -42705313 - L1M4 LINE L1 -2106 4040 3692 324 0 0 0 chr15 58675420 58675456 -42705065 + (TA)n Simple_repeat Simple_repeat 2 37 0 2388 100 0 3 chr15 58675466 58675777 -42704744 - AluSg SINE Alu 0 310 1 25 51 0 0 chr15 58675777 58675816 -42704705 + AT_rich Low_complexity Low_complexity 1 39 0 249 244 44 33 chr15 58676082 58676172 -42704349 - HAL1b LINE L1 -924 424 334 740 267 49 44 chr15 58676322 58676712 -42703809 - HAL1 LINE L1 0 2507 2116 419 236 14 40 chr15 58676957 58677105 -42703416 - HAL1 LINE L1 -410 2097 1954 718 305 117 35 chr15 58677110 58677487 -42703034 - MLT1I LTR MaLR -1 408 1 1005 265 132 5 chr15 58677523 58677893 -42702628 - HAL1 LINE L1 -605 1902 1486 541 211 11 50 chr15 58677895 58678075 -42702446 - HAL1 LINE L1 -1228 1279 1107 203 30 0 61 chr15 58678994 58679027 -42701494 + (TTTCC)n Simple_repeat Simple_repeat 5 35 0 1733 178 0 11 chr15 58679027 58679308 -42701213 - AluJb SINE Alu -34 278 1 945 171 68 49 chr15 58679534 58679739 -42700782 + MER3 DNA MER1_type 1 209 0 277 204 0 0 chr15 58679696 58679745 -42700776 - MER3 DNA MER1_type -119 90 42 * 247 149 30 75 chr15 58680169 58680236 -42700285 - L1M4c LINE L1 -6315 69 6 392 243 105 40 chr15 58681129 58681281 -42699240 + MER5A DNA MER1_type 6 167 -22 200 303 141 20 chr15 58681455 58681554 -42698967 + MIR SINE MIR 72 182 -80 183 156 0 0 chr15 58682538 58682570 -42697951 + (TCTA)n Simple_repeat Simple_repeat 4 35 0 531 250 15 52 chr15 58682595 58682731 -42697790 - MIR SINE MIR -120 142 12 688 272 45 18 chr15 58682993 58683227 -42697294 + MIR SINE MIR 21 262 0 402 268 63 24 chr15 58683259 58683386 -42697135 - MIR SINE MIR -13 249 118 718 267 182 52 chr15 58683717 58684162 -42696359 - MLT1H LTR MaLR 0 549 47 574 326 147 35 chr15 58685764 58686392 -42694129 + L1MEd LINE L1 69 766 -5353 1525 258 25 7 chr15 58686565 58687003 -42693518 + L1ME3 LINE L1 5716 6161 -1 322 184 101 18 chr15 58687053 58687162 -42693359 + L1MEd LINE L1 973 1090 -5029 298 274 187 40 chr15 58687243 58687517 -42693004 + L1MEd LINE L1 1114 1630 -860 226 0 59 0 chr15 58687711 58687745 -42692776 + (CA)n Simple_repeat Simple_repeat 1 36 0 297 333 121 10 chr15 58688543 58688741 -42691780 + L2 LINE L2 3005 3224 -48 185 323 15 0 chr15 58688932 58688997 -42691524 - MIR SINE MIR -108 154 89 419 0 0 19 chr15 58691121 58691173 -42689348 + (CA)n Simple_repeat Simple_repeat 2 52 0 354 247 49 12 chr15 58692382 58692463 -42688058 - MIR SINE MIR -156 106 23 829 176 31 0 chr15 58693358 58693517 -42687004 - MER50-int LTR ERV1 -1315 5890 5727 823 180 42 0 chr15 58693581 58693748 -42686773 + LTR49-int LTR ERV1 5596 5769 -562 2186 127 3 6 chr15 58693865 58694179 -42686342 + AluSp SINE Alu 1 313 0 217 233 17 17 chr15 58694809 58694869 -42685652 - L2 LINE L2 -29 3243 3184 2446 80 0 16 chr15 58694883 58695195 -42685326 + AluSc SINE Alu 3 309 0 439 299 52 106 chr15 58695361 58695803 -42684718 - L2 LINE L2 0 3272 2855 1616 200 0 17 chr15 58695893 58696188 -42684333 - AluJo SINE Alu -22 290 1 667 288 91 5 chr15 58697730 58697949 -42682572 - MIR SINE MIR 0 262 25 183 80 0 0 chr15 58698424 58698449 -42682072 + (TC)n Simple_repeat Simple_repeat 2 26 0 539 337 24 24 chr15 58698971 58699176 -42681345 + MIR3 SINE MIR 4 208 0 24 0 0 0 chr15 58699337 58699361 -42681160 + AT_rich Low_complexity Low_complexity 1 24 0 245 197 61 0 chr15 58699445 58699511 -42681010 - MIR SINE MIR -102 160 91 294 235 118 0 chr15 58699593 58699661 -42680860 - Zaphod DNA AcHobo -9 4022 3947 1524 211 77 48 chr15 58699891 58700345 -42680176 - MLT1C LTR MaLR 0 467 1 494 306 91 26 chr15 58700919 58701143 -42679378 - MIR SINE MIR -12 250 11 198 0 0 0 chr15 58701749 58701771 -42678750 + (T)n Simple_repeat Simple_repeat 1 22 0 183 310 35 0 chr15 58703331 58703389 -42677132 - MIR SINE MIR -82 126 67 627 262 147 5 chr15 58703575 58703766 -42676755 + MIR SINE MIR 42 259 -3 387 301 148 25 chr15 58704525 58704738 -42675783 + MIR SINE MIR 20 250 -12 341 254 123 23 chr15 58705621 58705751 -42674770 - MIR SINE MIR -43 219 77 288 0 0 0 chr15 58707330 58707362 -42673159 + (A)n Simple_repeat Simple_repeat 1 32 0 638 282 93 25 chr15 58707497 58707862 -42672659 + L1ME4a LINE L1 5472 5861 -260 212 173 284 0 chr15 58707940 58708021 -42672500 - MIR SINE MIR 0 262 159 1164 261 40 40 chr15 58708106 58708481 -42672040 + LTR16A LTR ERVL 76 450 0 405 240 50 25 chr15 58708541 58708662 -42671859 + HERV16 LTR ERVL 85 208 -4788 639 253 144 39 chr15 58708838 58709143 -42671378 + HERV16 LTR ERVL 468 804 -4192 2328 94 16 3 chr15 58709930 58710239 -42670282 + AluSp SINE Alu 1 313 0 362 287 169 21 chr15 58711023 58711455 -42669066 + L1M4 LINE L1 2425 2920 -3226 1871 242 108 9 chr15 58711593 58712147 -42668374 + MLT1E2 LTR MaLR 14 622 -4 26 30 0 0 chr15 58712235 58712268 -42668253 + AT_rich Low_complexity Low_complexity 1 33 0 702 299 63 34 chr15 58712269 58712794 -42667727 - L1ME LINE L1 -3460 2620 2081 1370 220 16 28 chr15 58713302 58713625 -42666896 + MLT1C LTR MaLR 147 465 -2 941 301 21 38 chr15 58713704 58714090 -42666431 - L1ME LINE L1 -5448 622 243 395 350 6 11 chr15 58714091 58714271 -42666250 - L1ME LINE L1 -5871 199 21 255 269 64 39 chr15 58714273 58714351 -42666170 + MER5B DNA MER1_type 99 178 0 206 294 20 0 chr15 58715504 58715555 -42664966 - L3 LINE CR1 -197 1380 1329 216 0 0 0 chr15 58716676 58716700 -42663821 + (A)n Simple_repeat Simple_repeat 1 24 0 231 330 30 20 chr15 58716964 58717064 -42663457 - MIR SINE MIR -10 252 152 220 225 95 0 chr15 58718396 58718472 -42662049 - MIR SINE MIR -95 113 37 423 327 0 7 chr15 58718590 58718740 -42661781 - MIR SINE MIR -70 192 44 253 184 58 92 chr15 58718785 58718872 -42661649 - MIR SINE MIR -67 195 112 492 257 75 53 chr15 58718883 58719070 -42661451 - MIR3 SINE MIR -5 203 13 255 194 0 148 chr15 58719119 58719141 -42661380 + MIR SINE MIR 102 126 -136 2108 159 31 28 chr15 58719141 58719530 -42660991 - MLT1B LTR MaLR 0 390 1 255 194 0 148 chr15 58719530 58719615 -42660906 + MIR SINE MIR 126 193 -69 433 243 69 7 chr15 58720330 58720474 -42660047 + MIR3 SINE MIR 35 187 -21 228 274 123 9 chr15 58721146 58721252 -42659269 + MIR SINE MIR 64 181 -81 206 323 108 0 chr15 58721497 58721590 -42658931 + L2 LINE L2 3193 3295 -18 635 314 77 8 chr15 58722824 58723085 -42657436 + MER69 DNA AcHobo 116 394 -2132 * 669 214 7 0 chr15 58723084 58723224 -42657297 + MER69 DNA AcHobo 1947 2087 -439 4809 186 39 9 chr15 58723224 58723431 -42657090 - L1M3f LINE L1 -4378 950 751 2853 0 0 0 chr15 58723431 58723732 -42656789 - AluYa5 SINE Alu -10 301 1 4809 186 39 9 chr15 58723732 58724434 -42656087 - L1M3f LINE L1 -4577 751 14 1178 236 152 3 chr15 58724444 58724800 -42655721 + MER69 DNA AcHobo 2073 2481 -45 351 200 361 8 chr15 58725345 58725475 -42655046 - MIR SINE MIR -10 252 77 427 300 61 17 chr15 58727955 58728135 -42652386 + MIR SINE MIR 75 262 0 816 93 0 0 chr15 58728355 58728463 -42652058 + MLT1C LTR MaLR 1 108 -359 3596 202 105 57 chr15 58728464 58729447 -42651074 + MLT1C-int LTR MaLR 338 1367 -4 859 148 0 54 chr15 58729453 58729602 -42650919 + MLT1C LTR MaLR 3 143 -324 3078 51 26 10 chr15 58729602 58729993 -42650528 + THE1A-int LTR MaLR 1184 1580 0 2793 99 3 0 chr15 58729993 58730347 -42650174 + THE1A LTR MaLR 1 355 0 1363 197 108 30 chr15 58730347 58730652 -42649869 + MLT1C LTR MaLR 139 467 0 1290 224 72 28 chr15 58731011 58731332 -42649189 + MER2 DNA MER2_type 1 335 -10 209 205 0 0 chr15 58731332 58731371 -42649150 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 210 335 124 49 chr15 58733617 58733987 -42646534 - L2 LINE L2 -349 2965 2568 324 309 36 77 chr15 58734603 58734797 -42645724 - MIR SINE MIR -42 220 35 327 222 89 0 chr15 58734864 58734954 -42645567 - L1MC4 LINE L1 -1331 6711 6614 305 196 33 54 chr15 58734873 58734965 -42645556 + L1MC4 LINE L1 6614 6703 -1339 * 189 280 20 0 chr15 58737129 58737179 -42643342 + L3 LINE CR1 1516 1566 -11 2138 163 102 13 chr15 58737841 58738314 -42642207 + MER69 DNA AcHobo 2010 2524 -2 602 258 86 27 chr15 58738351 58738723 -42641798 + L1MC4a LINE L1 864 1257 -4862 688 183 17 9 chr15 58739169 58739284 -42641237 + FLAM_A SINE Alu 1 116 -17 420 289 62 63 chr15 58739440 58739811 -42640710 + L1MC4a LINE L1 4295 4666 -1463 2134 120 0 13 chr15 58739811 58740120 -42640401 + AluSx SINE Alu 1 305 -7 420 289 62 63 chr15 58740120 58740285 -42640236 + L1MC4a LINE L1 4666 4830 -1299 324 309 53 7 chr15 58740390 58740542 -42639979 + L1MC4a LINE L1 4874 5032 -1097 495 73 0 0 chr15 58740555 58740623 -42639898 + (TA)n Simple_repeat Simple_repeat 2 69 0 4699 226 63 15 chr15 58740878 58742583 -42637938 + L1MC4a LINE L1 5237 7791 0 1601 109 0 13 chr15 58742865 58743094 -42637427 - AluSg/x SINE Alu -11 299 74 277 280 32 21 chr15 58743211 58743304 -42637217 - MLT1J2 LTR MaLR -14 436 343 243 289 86 70 chr15 58743357 58743485 -42637036 - MLT1I LTR MaLR -189 220 91 596 276 116 37 chr15 58743518 58743695 -42636826 + L1ME4a LINE L1 2367 2529 -3600 2792 124 30 26 chr15 58743695 58744121 -42636400 - MSTA LTR MaLR 0 428 1 596 276 116 37 chr15 58744121 58744403 -42636118 + L1ME4a LINE L1 2529 2787 -3342 2157 112 7 3 chr15 58744403 58744699 -42635822 - AluSx SINE Alu -15 297 1 596 276 116 37 chr15 58744699 58744948 -42635573 + L1ME4a LINE L1 2787 3132 -2997 438 294 117 19 chr15 58745274 58745853 -42634668 + L1ME4a LINE L1 4916 5624 -480 359 289 48 6 chr15 58746098 58746242 -42634279 + L1ME4a LINE L1 5655 5807 -297 2782 93 3 0 chr15 58746242 58746597 -42633924 + L1PB1 LINE L1 5794 6149 -2 359 289 48 6 chr15 58746597 58746611 -42633910 + L1ME4a LINE L1 5807 5819 -285 280 64 43 0 chr15 58746732 58746779 -42633742 + (CA)n Simple_repeat Simple_repeat 1 49 0 336 247 234 25 chr15 58747292 58747450 -42633071 + MIR SINE MIR 1 191 -71 * 390 337 122 0 chr15 58747448 58747620 -42632901 - MIR SINE MIR 0 262 70 562 274 102 52 chr15 58748294 58748397 -42632124 + L1ME4a LINE L1 5738 5834 -287 1864 173 3 3 chr15 58748397 58748698 -42631823 - AluSx SINE Alu -11 301 1 562 274 102 52 chr15 58748698 58748717 -42631804 + L1ME4a LINE L1 5834 5851 -270 3077 119 14 0 chr15 58748717 58749145 -42631376 + MER57B LTR ERV1 1 434 0 562 274 102 52 chr15 58749145 58749383 -42631138 + L1ME4a LINE L1 5851 6117 -4 210 331 83 48 chr15 58749474 58749619 -42630902 + MIR SINE MIR 34 183 -79 321 26 0 0 chr15 58749739 58749777 -42630744 + (CA)n Simple_repeat Simple_repeat 2 39 0 1501 138 121 32 chr15 58750551 58750833 -42629688 + AluSx SINE Alu 1 307 -5 325 293 130 93 chr15 58751009 58751515 -42629006 + L2 LINE L2 2590 3136 -136 2040 128 0 3 chr15 58751515 58751862 -42628659 - AluSx SINE Alu 0 346 1 325 293 130 93 chr15 58751862 58752005 -42628516 + L2 LINE L2 3136 3272 0 337 155 99 28 chr15 58752132 58752203 -42628318 + MLT1A1 LTR MaLR 2 77 -351 2161 142 15 3 chr15 58752226 58752564 -42627957 + MER47A DNA MER2_type 23 364 -2 920 201 58 65 chr15 58752567 58752659 -42627862 + MLT1A1 LTR MaLR 62 153 -212 2021 113 67 0 chr15 58752659 58752941 -42627580 + AluSx SINE Alu 1 301 -11 920 201 58 65 chr15 58752941 58753198 -42627323 + MLT1A1 LTR MaLR 153 365 0 270 306 148 34 chr15 58754422 58754631 -42625890 + MIR SINE MIR 20 252 -10 198 0 0 0 chr15 58755578 58755600 -42624921 + (T)n Simple_repeat Simple_repeat 1 22 0 214 279 127 0 chr15 58755646 58755725 -42624796 - MIR SINE MIR -68 140 61 291 240 30 30 chr15 58755836 58755936 -42624585 - L1ME4a LINE L1 -2 6119 6020 1413 260 210 59 chr15 58756103 58757116 -42623405 - L2 LINE L2 -1568 1746 581 1998 157 0 0 chr15 58757190 58757495 -42623026 - AluSx SINE Alu -7 305 1 1076 128 0 0 chr15 58757761 58757953 -42622568 - AluSg/x SINE Alu 0 325 134 2205 131 0 6 chr15 58757986 58758299 -42622222 - AluSx SINE Alu 0 312 2 233 295 0 0 chr15 58758481 58758542 -42621979 - MER5A DNA MER1_type 0 189 129 182 37 37 0 chr15 58758871 58758898 -42621623 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 766 231 23 0 chr15 58759915 58760088 -42620433 - MIR SINE MIR -5 257 81 274 279 139 80 chr15 58760129 58760466 -42620055 - L2 LINE L2 -18 3254 2898 1090 192 65 19 chr15 58761219 58761347 -42619174 - MER58A DNA MER1_type -2196 224 81 198 0 0 0 chr15 58761347 58761369 -42619152 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 1090 192 65 19 chr15 58761369 58761454 -42619067 - MER58A DNA MER1_type -2339 81 1 180 290 32 54 chr15 58761758 58761851 -42618670 - MIR SINE MIR -140 122 32 418 299 43 27 chr15 58762489 58762673 -42617848 - MER5A DNA MER1_type -2 187 1 430 269 94 12 chr15 58763341 58763501 -42617020 + LTR33 LTR ERVL 306 478 -43 413 298 95 6 chr15 58764064 58764232 -42616289 + MER117 DNA MER1_type 5 187 -10 387 289 56 0 chr15 58767043 58767185 -42613336 - MIR SINE MIR -3 259 110 190 194 0 0 chr15 58767456 58767487 -42613034 + MIR SINE MIR 15 45 -217 387 289 56 0 chr15 58767987 58768129 -42612392 - MIR SINE MIR -3 259 110 903 246 81 16 chr15 58768384 58768635 -42611886 + MIR SINE MIR 2 262 0 357 258 78 18 chr15 58769325 58769492 -42611029 - L1ME4a LINE L1 -234 5887 5711 1888 159 0 16 chr15 58770024 58770332 -42610189 + AluJb SINE Alu 1 303 -9 228 263 75 12 chr15 58770450 58770530 -42609991 + MLT1K LTR MaLR 162 246 -342 369 0 0 0 chr15 58770862 58770875 -42609646 + (TG)n Simple_repeat Simple_repeat 1 54 0 369 0 0 0 chr15 58770875 58770916 -42609605 + (TG)n Simple_repeat Simple_repeat 1 41 0 244 291 0 0 chr15 58772214 58772269 -42608252 + (ATG)n Simple_repeat Simple_repeat 2 56 0 216 204 23 0 chr15 58772507 58772551 -42607970 + GA-rich Low_complexity Low_complexity 3 47 0 15410 132 40 11 chr15 58773192 58773418 -42607103 - Tigger1 DNA MER2_type 0 2418 2200 1529 196 21 11 chr15 58773418 58773738 -42606783 + AluJb SINE Alu 1 323 0 15410 132 40 11 chr15 58773738 58775861 -42604660 - Tigger1 DNA MER2_type -218 2200 1 356 276 97 8 chr15 58776383 58776517 -42604004 - MIR SINE MIR -14 248 103 237 125 196 36 chr15 58776763 58776819 -42603702 - L2 LINE L2 -17 3255 3191 1481 199 65 46 chr15 58777810 58778177 -42602344 + MLT1A2 LTR MaLR 1 374 0 1361 195 65 0 chr15 58778522 58778705 -42601816 - AluJb SINE Alu -4 308 100 282 29 0 0 chr15 58778705 58778740 -42601781 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1361 195 65 0 chr15 58778740 58778833 -42601688 - AluJb SINE Alu -212 100 14 672 177 88 0 chr15 58778849 58778962 -42601559 - FLAM_C SINE Alu -10 123 1 504 230 158 20 chr15 58779558 58779710 -42600811 - MER5A DNA MER1_type -8 181 9 183 80 0 0 chr15 58779924 58779949 -42600572 + (T)n Simple_repeat Simple_repeat 1 25 0 356 340 76 71 chr15 58780758 58781401 -42599120 + L2 LINE L2 2557 3222 -50 401 331 97 6 chr15 58783289 58783464 -42597057 + MIR SINE MIR 2 192 -70 2128 109 3 0 chr15 58783678 58783961 -42596560 + AluSx SINE Alu 3 286 -26 23 0 0 0 chr15 58783961 58783984 -42596537 + AT_rich Low_complexity Low_complexity 1 23 0 473 307 98 12 chr15 58784192 58784355 -42596166 + MIR3 SINE MIR 26 202 -6 274 259 119 43 chr15 58784726 58784893 -42595628 + MIR SINE MIR 31 206 -56 327 49 0 0 chr15 58785315 58785356 -42595165 + (TG)n Simple_repeat Simple_repeat 2 42 0 297 118 0 0 chr15 58787275 58787326 -42593195 + (CA)n Simple_repeat Simple_repeat 2 52 0 846 224 57 5 chr15 58787347 58787557 -42592964 - MIR SINE MIR -10 252 32 790 275 102 62 chr15 58787779 58788183 -42592338 + MLT1J1 LTR MaLR 7 426 -20 538 226 43 38 chr15 58788908 58789005 -42591516 - LTR67 LTR ERVL -5 552 452 2013 172 13 54 chr15 58789005 58789394 -42591127 - MLT1A2 LTR MaLR -1 373 1 538 226 43 38 chr15 58789394 58789482 -42591039 - LTR67 LTR ERVL -105 452 366 476 332 18 8 chr15 58789782 58790042 -42590479 - MIR SINE MIR -17 245 19 772 248 55 20 chr15 58793449 58793651 -42586870 + MIR SINE MIR 27 235 -27 316 327 112 56 chr15 58795879 58796130 -42584391 - L2 LINE L2 -161 3111 2875 2343 105 0 0 chr15 58796130 58796434 -42584087 + AluSx SINE Alu 1 304 -8 316 327 112 56 chr15 58796434 58796877 -42583644 - L2 LINE L2 -397 2875 2376 558 275 29 63 chr15 58797056 58797372 -42583149 - MLT1L LTR MaLR -255 360 56 351 293 127 49 chr15 58797390 58797714 -42582807 - MLT1I LTR MaLR -57 352 4 516 296 97 10 chr15 58797756 58797962 -42582559 - L3 LINE CR1 -137 1440 1217 268 313 174 9 chr15 58799080 58799195 -42581326 - L2 LINE L2 0 3313 3180 1963 151 7 0 chr15 58799232 58799530 -42580991 + AluSx SINE Alu 1 300 -12 921 288 0 0 chr15 58799534 58799763 -42580758 - MIR SINE MIR -11 251 23 344 253 75 70 chr15 58800141 58800327 -42580194 - MIR3 SINE MIR -21 187 1 230 218 68 53 chr15 58801766 58801899 -42578622 - Charlie7 DNA MER1_type -35 2577 2443 1376 156 0 0 chr15 58802023 58802247 -42578274 + AluSg/x SINE Alu 83 306 0 222 380 116 0 chr15 58802381 58802502 -42578019 + MIR SINE MIR 26 160 -102 402 284 97 15 chr15 58802874 58803008 -42577513 - L2 LINE L2 -940 2374 2230 208 376 20 0 chr15 58803173 58803274 -42577247 + L2 LINE L2 3190 3292 -21 189 233 0 0 chr15 58804220 58804263 -42576258 + MIR SINE MIR 139 181 -81 551 104 0 0 chr15 58804284 58804361 -42576160 + Alu SINE Alu 229 305 -4 22 35 0 0 chr15 58805144 58805173 -42575348 + AT_rich Low_complexity Low_complexity 1 29 0 228 305 29 19 chr15 58806256 58806361 -42574160 + L1MEc LINE L1 14 119 -6277 273 109 22 0 chr15 58806362 58806408 -42574113 - MADE1 DNA Mariner 0 80 34 1963 263 89 87 chr15 58806482 58807052 -42573469 + L1MEc LINE L1 159 727 -5669 1743 164 14 0 chr15 58807052 58807345 -42573176 + AluJb SINE Alu 1 297 -15 1963 263 89 87 chr15 58807345 58807465 -42573056 + L1MEc LINE L1 727 845 -5551 2248 118 0 0 chr15 58807465 58807769 -42572752 + AluSq SINE Alu 1 304 -9 1963 263 89 87 chr15 58807769 58809173 -42571348 + L1MEc LINE L1 845 2257 -4139 2517 257 95 14 chr15 58809218 58810177 -42570344 + L1MEc LINE L1 2345 3551 -2664 1884 121 6 86 chr15 58810177 58810516 -42570005 - AluSx SINE Alu 0 312 1 2517 257 95 14 chr15 58810516 58810915 -42569606 + L1MEc LINE L1 3551 3916 -2299 1029 242 38 38 chr15 58810916 58811312 -42569209 - L1M4 LINE L1 -1621 4525 4130 3575 117 36 0 chr15 58811336 58811859 -42568662 + L1PA16 LINE L1 5625 6166 0 1452 246 32 61 chr15 58812129 58812754 -42567767 - L1MDb LINE L1 -5029 1514 908 289 355 33 39 chr15 58813286 58813593 -42566928 - L1MDb LINE L1 -6211 329 25 1558 186 7 11 chr15 58813953 58814232 -42566289 + AluJo SINE Alu 1 278 -34 625 44 11 11 chr15 58814234 58814324 -42566197 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 237 372 76 31 chr15 58816212 58816502 -42564019 - L2 LINE L2 -166 3106 2804 3531 193 43 25 chr15 58816926 58817220 -42563301 - L1ME1 LINE L1 -6 6160 5873 2366 66 3 30 chr15 58817220 58817525 -42562996 + AluY SINE Alu 3 299 -12 3531 193 43 25 chr15 58817525 58818037 -42562484 - L1ME1 LINE L1 -293 5873 5339 237 278 139 19 chr15 58818037 58818145 -42562376 - L2 LINE L2 -1000 2314 2194 612 65 0 0 chr15 58818405 58818482 -42562039 - L1PB2 LINE L1 -191 5960 5884 2349 71 0 0 chr15 58818492 58818798 -42561723 - AluSc SINE Alu 0 306 1 703 207 0 7 chr15 58818802 58818947 -42561574 + Charlie4 DNA MER1_type 1818 1961 0 350 263 98 41 chr15 58818984 58819178 -42561343 - LTR33 LTR ERVL -310 211 7 1795 148 6 32 chr15 58819915 58820190 -42560331 + AluJo SINE Alu 10 278 -34 186 71 0 0 chr15 58820190 58820218 -42560303 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1795 148 6 32 chr15 58820218 58820253 -42560268 + AluJo SINE Alu 278 312 0 1028 272 18 88 chr15 58820288 58820315 -42560206 - Charlie4 DNA MER1_type -318 1643 1616 1788 163 0 0 chr15 58820315 58820637 -42559884 - AluJb SINE Alu 0 322 1 1028 272 18 88 chr15 58820637 58821291 -42559230 - Charlie4 DNA MER1_type -345 1616 1008 6047 120 17 35 chr15 58821299 58822342 -42558179 - L1MA6 LINE L1 0 6300 5276 537 322 20 4 chr15 58822478 58822733 -42557788 - Charlie4 DNA MER1_type -1071 890 632 866 176 38 145 chr15 58823314 58823491 -42557030 - Charlie4 DNA MER1_type -218 290 160 1533 139 143 4 chr15 58823491 58823757 -42556764 + AluSq SINE Alu 1 303 0 866 176 38 145 chr15 58823757 58823897 -42556624 - Charlie4 DNA MER1_type -348 160 7 1137 325 54 47 chr15 58823927 58824924 -42555597 + ERVL LTR ERVL 4344 5389 -375 664 238 17 39 chr15 58825111 58825292 -42555229 + LTR33 LTR ERVL 1 177 -344 22 35 0 0 chr15 58827355 58827384 -42553137 + AT_rich Low_complexity Low_complexity 1 29 0 5503 146 47 25 chr15 58827580 58829467 -42551054 - L1MA8 LINE L1 0 6291 4353 846 208 87 14 chr15 58829937 58830225 -42550296 - MER69 DNA AcHobo -68 2458 2150 3439 219 91 48 chr15 58830231 58831223 -42549298 - L1MC4a LINE L1 -6 7802 6759 2046 54 0 0 chr15 58831223 58831463 -42549058 - AluY SINE Alu -4 307 68 3439 219 91 48 chr15 58831463 58831540 -42548981 - L1MC4a LINE L1 -1049 6759 6687 2062 207 74 27 chr15 58831536 58832049 -42548472 - L1ME1 LINE L1 -275 5891 5355 * 2514 205 58 11 chr15 58832049 58832699 -42547822 - MER69 DNA AcHobo -388 2138 1458 2046 98 0 57 chr15 58832702 58833020 -42547501 + AluSg SINE Alu 1 300 -10 556 266 19 13 chr15 58833026 58833184 -42547337 - MER69 DNA AcHobo -944 282 124 254 357 115 19 chr15 58834545 58834702 -42545819 + L2 LINE L2 3100 3271 -1 252 182 0 0 chr15 58834722 58834766 -42545755 - L2 LINE L2 -16 3297 3254 732 253 53 47 chr15 58834767 58835107 -42545414 - L1MEd LINE L1 -4862 1257 916 307 346 50 17 chr15 58835146 58835386 -42545135 - L1MEd LINE L1 -5208 911 664 547 328 32 16 chr15 58836735 58836988 -42543533 - MIR SINE MIR -1 261 5 252 250 14 0 chr15 58838339 58838411 -42542110 + (CA)n Simple_repeat Simple_repeat 2 74 0 322 237 77 45 chr15 58838548 58838704 -42541817 + L1MC/D LINE L1 5350 5510 -2298 288 0 0 0 chr15 58838903 58838935 -42541586 + (CA)n Simple_repeat Simple_repeat 2 33 0 459 249 39 68 chr15 58839366 58839603 -42540918 - MIR SINE MIR -30 232 3 1013 160 49 36 chr15 58839639 58839864 -42540657 + L1M4 LINE L1 4563 4790 -1356 6942 161 13 6 chr15 58839864 58841022 -42539499 - Ricksha_b DNA DNA 0 1254 89 3041 214 59 47 chr15 58841211 58842167 -42538354 - L1ME3 LINE L1 -21 6141 5190 4398 124 13 14 chr15 58842167 58842879 -42537642 - L1PA16 LINE L1 -3 6163 5453 186 50 75 0 chr15 58843658 58843698 -42536823 + (TA)n Simple_repeat Simple_repeat 1 43 0 464 211 24 89 chr15 58845686 58845809 -42534712 + MIR SINE MIR 78 192 -70 1132 234 0 4 chr15 58846313 58846539 -42533982 - MIR SINE MIR -21 241 17 24 91 0 0 chr15 58846885 58846951 -42533570 + AT_rich Low_complexity Low_complexity 1 66 0 201 310 60 30 chr15 58847119 58847219 -42533302 - MIR SINE MIR -128 134 32 2285 110 0 7 chr15 58847816 58848126 -42532395 - AluSx SINE Alu -4 308 1 5595 222 32 14 chr15 58848126 58850369 -42530152 - L1M1 LINE L1 -4049 2279 14 2248 113 0 0 chr15 58851084 58851385 -42529136 - AluSq SINE Alu -12 301 1 193 373 63 24 chr15 58852095 58852221 -42528300 - L2 LINE L2 -4 3268 3138 204 40 0 0 chr15 58852250 58852275 -42528246 + (TG)n Simple_repeat Simple_repeat 2 26 0 1294 201 34 40 chr15 58853013 58853311 -42527210 - AluJo SINE Alu -16 296 1 373 321 93 72 chr15 58854901 58855261 -42525260 - L2 LINE L2 -4 3268 2896 2771 0 0 7 chr15 58855261 58855566 -42524955 + AluYa5 SINE Alu 1 303 -8 373 321 93 72 chr15 58855566 58855622 -42524899 - L2 LINE L2 -376 2896 2843 280 277 21 35 chr15 58855673 58855814 -42524707 - MER103 DNA DNA -11 155 17 38 51 0 0 chr15 58856506 58856565 -42523956 + AT_rich Low_complexity Low_complexity 1 59 0 1565 174 206 9 chr15 58857547 58857983 -42522538 + Charlie1b DNA MER1_type 1 522 -1 346 181 60 0 chr15 58859336 58859419 -42521102 + L1ME1 LINE L1 6074 6161 -5 23 33 0 0 chr15 58859832 58859862 -42520659 + AT_rich Low_complexity Low_complexity 1 30 0 906 216 25 25 chr15 58860452 58860656 -42519865 - MER20 DNA MER1_type 0 219 16 243 61 0 0 chr15 58860743 58860776 -42519745 + (TG)n Simple_repeat Simple_repeat 2 34 0 1724 153 21 38 chr15 58860974 58861261 -42519260 - AluJo SINE Alu -30 282 1 238 65 22 22 chr15 58861454 58861500 -42519021 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 4058 35 2 0 chr15 58861500 58861979 -42518542 - L1PA3 LINE L1 -24 6131 5652 235 260 87 87 chr15 58862831 58862981 -42517540 - L2 LINE L2 -4 3309 3160 769 294 77 4 chr15 58863402 58863637 -42516884 - MIR SINE MIR 0 262 11 315 325 42 8 chr15 58863902 58864022 -42516499 + L1M4 LINE L1 5078 5201 -945 314 83 62 0 chr15 58864023 58864071 -42516450 + L1P4 LINE L1 5453 5503 -660 1296 218 67 102 chr15 58866145 58866816 -42513705 + L1MC4 LINE L1 7407 7995 0 2037 138 0 16 chr15 58866826 58867131 -42513390 + AluSx SINE Alu 1 300 -12 2129 128 0 10 chr15 58867139 58867427 -42513094 + AluSx SINE Alu 1 287 -25 441 0 0 0 chr15 58867427 58867476 -42513045 + (CA)n Simple_repeat Simple_repeat 2 50 0 2129 128 0 10 chr15 58867476 58867500 -42513021 + AluSx SINE Alu 287 310 -2 32 75 0 0 chr15 58868648 58868715 -42511806 + AT_rich Low_complexity Low_complexity 1 67 0 439 321 15 23 chr15 58870215 58870346 -42510175 - MIR SINE MIR -126 136 7 260 301 27 0 chr15 58870365 58870438 -42510083 + MIR3 SINE MIR 104 178 -30 271 349 0 0 chr15 58871789 58871872 -42508649 - L2 LINE L2 -22 3291 3209 330 26 0 0 chr15 58872286 58872325 -42508196 + (TA)n Simple_repeat Simple_repeat 1 39 0 2031 132 7 0 chr15 58872326 58872613 -42507908 - AluSg SINE Alu -21 289 1 207 100 300 0 chr15 58873001 58873041 -42507480 + L2 LINE L2 3262 3313 0 1253 186 57 93 chr15 58873141 58873527 -42506994 - MLT1A2 LTR MaLR 0 374 3 346 279 82 19 chr15 58873675 58873833 -42506688 + MIR3 SINE MIR 7 174 -34 193 346 50 0 chr15 58874421 58874522 -42505999 - MIR SINE MIR -80 182 77 299 241 116 36 chr15 58874621 58874733 -42505788 + MIR SINE MIR 17 137 -71 710 231 262 39 chr15 58874733 58875088 -42505433 + MER57A LTR ERV1 1 403 0 217 316 51 8 chr15 58875492 58875609 -42504912 + MIR SINE MIR 13 134 -128 192 328 8 42 chr15 58876756 58876875 -42503646 - L2 LINE L2 -6 3307 3193 687 245 97 25 chr15 58877277 58877473 -42503048 + MER63A DNA MER1_type 1 210 0 206 217 0 0 chr15 58877678 58877724 -42502797 - L2 LINE L2 0 3313 3268 600 111 134 111 chr15 58877993 58878165 -42502356 - MER106B DNA MER1_type -15 1044 46 1867 130 70 0 chr15 58879381 58879666 -42500855 - AluSx SINE Alu -7 305 1 2302 124 71 28 chr15 58879715 58880150 -42500371 + LTR24C LTR ERV1 1 454 -181 244 318 66 13 chr15 58881069 58881220 -42499301 - L1ME LINE L1 -273 5897 5739 2147 111 3 3 chr15 58881790 58882088 -42498433 + AluSx SINE Alu 1 298 -14 23 0 0 0 chr15 58882489 58882512 -42498009 + AT_rich Low_complexity Low_complexity 1 23 0 43 47 0 0 chr15 58884357 58884421 -42496100 + AT_rich Low_complexity Low_complexity 1 64 0 5249 162 22 22 chr15 58884926 58886852 -42493669 + L1PA16 LINE L1 4221 6147 -19 1937 135 83 9 chr15 58886993 58887342 -42493179 + THE1C LTR MaLR 1 375 0 234 329 53 13 chr15 58888245 58888321 -42492200 + L2 LINE L2 3194 3272 0 2245 113 0 3 chr15 58890476 58890778 -42489743 + AluSq SINE Alu 1 301 -12 21 57 0 0 chr15 58892039 58892074 -42488447 + AT_rich Low_complexity Low_complexity 1 35 0 412 327 124 26 chr15 58892207 58892473 -42488048 - L3 LINE CR1 -3 1574 1283 317 242 178 68 chr15 58892470 58892734 -42487787 + L2 LINE L2 3020 3312 -1 * 323 337 58 23 chr15 58892757 58892929 -42487592 - L3 LINE CR1 -366 1211 1034 21 71 0 0 chr15 58893526 58893568 -42486953 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr15 58893875 58893897 -42486624 + AT_rich Low_complexity Low_complexity 1 22 0 43 35 0 0 chr15 58894089 58894146 -42486375 + AT_rich Low_complexity Low_complexity 1 57 0 1137 152 45 0 chr15 58894146 58894344 -42486177 - MER2 DNA MER2_type -138 207 1 817 258 0 28 chr15 58894802 58895019 -42485502 + MIR SINE MIR 11 221 -41 21 36 0 0 chr15 58895023 58895051 -42485470 + AT_rich Low_complexity Low_complexity 1 28 0 1068 235 107 63 chr15 58895751 58896245 -42484276 + MLT1H1 LTR MaLR 40 555 0 1228 163 0 5 chr15 58896336 58896526 -42483995 + AluJb SINE Alu 1 189 -123 271 314 35 77 chr15 58896588 58896757 -42483764 - L2 LINE L2 -217 3096 2935 335 293 123 0 chr15 58896794 58896900 -42483621 + L2 LINE L2 3195 3313 0 1051 243 108 52 chr15 58896902 58897071 -42483450 - L2 LINE L2 -429 2885 2727 2139 107 4 0 chr15 58897071 58897383 -42483138 - AluSx SINE Alu 0 313 1 1051 243 108 52 chr15 58897383 58897619 -42482902 - L2 LINE L2 -587 2727 2456 288 211 88 26 chr15 58897773 58897887 -42482634 - L1ME4a LINE L1 -1 6120 6000 219 226 0 0 chr15 58898271 58898324 -42482197 + (TG)n Simple_repeat Simple_repeat 2 54 0 475 219 23 55 chr15 58898829 58898957 -42481564 - L2 LINE L2 0 3313 3190 221 253 95 42 chr15 58899071 58899166 -42481355 - MIR SINE MIR -57 151 52 426 251 110 47 chr15 58900580 58900771 -42479750 + L2 LINE L2 3084 3286 -27 431 271 15 0 chr15 58900938 58901071 -42479450 + L1M4 LINE L1 2971 3105 -3041 3679 42 4 0 chr15 58901171 58901626 -42478895 + L1PA4 LINE L1 5699 6155 0 1331 183 7 39 chr15 58902040 58902325 -42478196 + AluJb SINE Alu 24 299 -13 269 185 15 0 chr15 58902329 58902394 -42478127 + A-rich Low_complexity Low_complexity 5 70 0 2366 78 0 16 chr15 58904993 58905300 -42475221 - AluSg1 SINE Alu -7 302 1 22 0 0 0 chr15 58907028 58907050 -42473471 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr15 58907789 58907814 -42472707 + AT_rich Low_complexity Low_complexity 1 25 0 196 288 0 41 chr15 58908050 58908123 -42472398 - MIR SINE MIR -119 143 74 2285 74 0 3 chr15 58908159 58908471 -42472050 - AluY SINE Alu 0 311 1 226 240 120 64 chr15 58910798 58910888 -42469633 + MIR SINE MIR 20 121 -141 2276 60 0 0 chr15 58910888 58911178 -42469343 - AluY SINE Alu 0 306 17 226 240 120 64 chr15 58911178 58911211 -42469310 + MIR SINE MIR 121 151 -111 2904 19 0 2 chr15 58911958 58912325 -42468196 - L1PA8A LINE L1 -392 5739 5379 2242 53 7 3 chr15 58912325 58912599 -42467922 + L1PA3 LINE L1 5870 6155 0 23 33 0 0 chr15 58913120 58913150 -42467371 + AT_rich Low_complexity Low_complexity 1 30 0 277 326 0 21 chr15 58913795 58913890 -42466631 - MIR3 SINE MIR -3 205 113 194 333 65 9 chr15 58913951 58914059 -42466462 - L2 LINE L2 -225 3047 2934 219 274 48 60 chr15 58914405 58914489 -42466032 - MIR SINE MIR -62 146 64 34 42 0 0 chr15 58914618 58914666 -42465855 + AT_rich Low_complexity Low_complexity 1 48 0 187 30 30 30 chr15 58915071 58915104 -42465417 + (TTTTTA)n Simple_repeat Simple_repeat 4 36 0 2504 31 0 0 chr15 58915110 58915402 -42465119 - L1PA5 LINE L1 -7 6147 5856 1242 33 0 0 chr15 58915400 58915555 -42464966 + L1PA5 LINE L1 5704 5858 -297 2156 101 7 3 chr15 58915736 58916023 -42464498 + AluSg SINE Alu 1 288 -22 1204 192 38 21 chr15 58916318 58916609 -42463912 - MER46C DNA MER2_type -42 296 1 264 231 0 0 chr15 58916866 58916944 -42463577 + (TA)n Simple_repeat Simple_repeat 1 78 0 452 286 149 26 chr15 58917090 58917244 -42463277 - MER5A DNA MER1_type -6 183 11 883 198 19 0 chr15 58917324 58917486 -42463035 + FAM SINE Alu 1 165 -10 288 308 75 9 chr15 58918472 58918579 -42461942 - L3 LINE CR1 -11 1566 1453 202 290 0 58 chr15 58919687 58919756 -42460765 - MIR3 SINE MIR -141 67 3 301 304 29 0 chr15 58919757 58919859 -42460662 + L1M4c LINE L1 2369 2473 -3911 6912 163 52 34 chr15 58919980 58921895 -42458626 - L1MA4 LINE L1 -11 7708 5707 1711 164 7 40 chr15 58921895 58922199 -42458322 - AluJb SINE Alu -18 294 1 6912 163 52 34 chr15 58922199 58922942 -42457579 - L1MA4 LINE L1 -2012 5707 4978 40454 37 22 3 chr15 58922968 58929006 -42451515 - L1PA3 LINE L1 0 6155 1 5789 174 32 33 chr15 58929007 58929162 -42451359 - L1MA4 LINE L1 -2570 4995 4841 2448 110 46 7 chr15 58929162 58929579 -42450942 - L1MA5A LINE L1 -10 6287 5855 5789 174 32 33 chr15 58929579 58930908 -42449613 - L1MA4 LINE L1 -2724 4841 3510 209 320 35 36 chr15 58931676 58931817 -42448704 + MIR SINE MIR 3 149 -59 190 283 81 10 chr15 58932548 58932647 -42447874 - L2 LINE L2 -30 3242 3137 366 228 50 0 chr15 58932894 58932995 -42447526 - MER105 DNA DNA -68 136 31 254 308 33 25 chr15 58934477 58934597 -42445924 - MIR SINE MIR -4 258 138 1304 147 67 29 chr15 58934708 58934946 -42445575 + AluJb SINE Alu 1 247 -65 523 266 18 41 chr15 58934973 58935142 -42445379 - MER5B DNA MER1_type -9 169 5 533 254 0 9 chr15 58935910 58936024 -42444497 + MER81 DNA DNA 2 114 0 365 304 106 41 chr15 58936737 58937293 -42443228 - L1MC4a LINE L1 -1959 5849 5258 208 311 232 20 chr15 58938121 58938272 -42442249 + L3 LINE CR1 1392 1574 -3 2343 116 16 35 chr15 58938305 58938676 -42441845 + THE1B LTR MaLR 1 364 0 2248 191 27 0 chr15 58939341 58939787 -42440734 - MLT2C2 LTR ERVL -4 460 3 2111 166 11 3 chr15 58939936 58940298 -42440223 - MLT1A1 LTR MaLR 0 365 1 183 382 49 16 chr15 58940453 58940576 -42439945 + L3 LINE CR1 38 164 -1413 197 264 245 0 chr15 58940783 58940889 -42439632 - MIR SINE MIR -111 151 20 1576 197 18 18 chr15 58940904 58941244 -42439277 + MER58B DNA MER1_type 1 340 -1 839 304 50 11 chr15 58941480 58941763 -42438758 + L3 LINE CR1 431 724 -853 557 352 67 6 chr15 58941763 58942078 -42438443 + L3 LINE CR1 891 1224 -353 952 255 50 0 chr15 58942092 58942390 -42438131 - LTR16C LTR ERVL 0 491 179 2146 126 3 0 chr15 58943889 58944183 -42436338 + AluJb SINE Alu 2 296 -16 1846 131 38 6 chr15 58944184 58944504 -42436017 - MLT1A1 LTR MaLR -35 330 1 1017 226 45 11 chr15 58944504 58944791 -42435730 + L1ME2 LINE L1 5819 6115 -49 2425 67 0 0 chr15 58944808 58945105 -42435416 + AluY SINE Alu 1 297 -14 189 213 0 0 chr15 58945536 58945583 -42434938 + CT-rich Low_complexity Low_complexity 2 48 0 318 243 12 110 chr15 58946326 58946499 -42434022 + MER5A DNA MER1_type 5 160 -29 221 244 53 94 chr15 58946506 58946678 -42433843 + MIR SINE MIR 41 205 -57 * 878 190 147 9 chr15 58946602 58946813 -42433708 - MIR SINE MIR 0 262 23 315 216 72 0 chr15 58947825 58947936 -42432585 + L2 LINE L2 2839 2957 -357 346 243 0 0 chr15 58947945 58948019 -42432502 - MER81 DNA DNA -40 74 1 408 226 134 63 chr15 58948026 58948265 -42432256 + L2 LINE L2 2959 3214 -99 323 323 10 0 chr15 58948366 58948465 -42432056 + L1ME2 LINE L1 3689 3788 -2358 1283 176 88 0 chr15 58948499 58948771 -42431750 - MER46B DNA MER2_type -60 176 6 267 158 53 0 chr15 58948838 58948895 -42431626 + L1MB2 LINE L1 5820 5879 -287 819 237 29 64 chr15 58948905 58949251 -42431270 + L1ME1 LINE L1 5826 6159 -7 30 27 0 0 chr15 58949784 58949821 -42430700 + AT_rich Low_complexity Low_complexity 1 37 0 28 29 0 0 chr15 58949841 58949876 -42430645 + AT_rich Low_complexity Low_complexity 1 35 0 8248 122 5 29 chr15 58951814 58952485 -42428036 + HSMAR2 DNA Mariner 1 626 -676 2408 103 0 0 chr15 58952485 58952797 -42427724 + AluSx SINE Alu 1 312 0 8248 122 5 29 chr15 58952797 58953458 -42427063 + HSMAR2 DNA Mariner 626 1301 -1 2461 73 0 10 chr15 58954162 58954476 -42426045 + AluY SINE Alu 1 311 0 730 131 15 8 chr15 58955584 58955714 -42424807 + L1MB2 LINE L1 6038 6168 -3 21 0 0 0 chr15 58955714 58955735 -42424786 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 58956003 58956024 -42424497 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr15 58956143 58956179 -42424342 + AT_rich Low_complexity Low_complexity 1 36 0 27 81 0 0 chr15 58957600 58957662 -42422859 + AT_rich Low_complexity Low_complexity 1 62 0 2210 116 3 0 chr15 58957840 58958141 -42422380 - AluSx SINE Alu -10 302 1 390 154 0 0 chr15 58958656 58958734 -42421787 + (CA)n Simple_repeat Simple_repeat 1 78 0 562 286 123 53 chr15 58958759 58959157 -42421364 + L1MEd LINE L1 988 1413 -4959 307 287 76 13 chr15 58959181 58959525 -42420996 + L1MEd LINE L1 1334 1903 -840 502 265 65 30 chr15 58959633 58959863 -42420658 + L1ME2 LINE L1 4527 4764 -1382 2048 144 16 33 chr15 58959863 58960231 -42420290 - THE1B LTR MaLR 0 364 3 2693 196 76 19 chr15 58960232 58960956 -42419565 + L1ME2 LINE L1 5397 6161 -3 1414 237 98 68 chr15 58960968 58961697 -42418824 + L1ME3A LINE L1 4423 5129 -1041 1811 147 13 32 chr15 58961697 58962009 -42418512 + AluSx SINE Alu 5 310 -2 1414 237 98 68 chr15 58962009 58962762 -42417759 + L1ME3A LINE L1 5129 5948 -222 262 304 110 21 chr15 58962817 58963008 -42417513 + L1ME3A LINE L1 5963 6170 0 2239 113 0 0 chr15 58963113 58963415 -42417106 + AluSx SINE Alu 1 302 -10 23 0 0 0 chr15 58964390 58964413 -42416108 + AT_rich Low_complexity Low_complexity 1 23 0 586 184 32 95 chr15 58965325 58965515 -42415006 + MER5B DNA MER1_type 1 178 0 280 308 11 0 chr15 58966129 58966220 -42414301 - MIR SINE MIR -62 200 109 212 164 0 109 chr15 58966369 58966424 -42414097 + L2 LINE L2 3265 3313 0 940 123 7 7 chr15 58967300 58967446 -42413075 - AluJb SINE Alu -30 282 137 215 353 92 29 chr15 58967935 58968142 -42412379 - L3b LINE CR1 -23 1560 1341 1983 110 20 7 chr15 58969705 58969997 -42410524 + AluSx SINE Alu 1 296 -16 384 333 48 0 chr15 58970217 58970343 -42410178 - MIR SINE MIR -33 229 98 24 32 0 0 chr15 58970839 58970870 -42409651 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr15 58971165 58971197 -42409324 + AT_rich Low_complexity Low_complexity 1 32 0 285 272 152 0 chr15 58971327 58971419 -42409102 + L2 LINE L2 3163 3268 -4 203 277 92 57 chr15 58972926 58973067 -42407454 + MIR3 SINE MIR 42 187 -21 303 338 44 49 chr15 58973160 58973364 -42407157 - HAL1 LINE L1 -1789 718 516 329 136 15 0 chr15 58974186 58974252 -42406269 + CT-rich Low_complexity Low_complexity 4 70 0 1485 164 109 0 chr15 58974307 58974581 -42405940 - AluJo SINE Alu -8 304 1 454 277 118 27 chr15 58974813 58975352 -42405169 - L1MC/D LINE L1 -774 5355 5147 292 299 61 24 chr15 58975363 58975527 -42404994 - L1MC/D LINE L1 -1070 5059 4890 638 146 58 22 chr15 58975554 58975691 -42404830 - L1MB5 LINE L1 -8 6166 6025 219 69 0 0 chr15 58975721 58975750 -42404771 + (T)n Simple_repeat Simple_repeat 1 29 0 947 112 35 0 chr15 58975757 58975900 -42404621 - L1PA10 LINE L1 -112 6056 5909 1575 194 41 0 chr15 58975904 58976223 -42404298 - L1MB5 LINE L1 -142 6032 5701 254 204 19 0 chr15 58976249 58976303 -42404218 + MIR SINE MIR 178 232 -30 663 283 52 31 chr15 58976351 58976772 -42403749 - L1MC/D LINE L1 -1299 4830 4401 2040 285 118 32 chr15 58976845 58977467 -42403054 - L1MEd LINE L1 -762 1728 1161 2486 75 0 3 chr15 58977467 58977774 -42402747 - AluSc SINE Alu -3 306 1 2040 285 118 32 chr15 58977774 58978644 -42401877 - L1MEd LINE L1 -1329 1161 16 829 290 126 34 chr15 58978922 58979478 -42401043 + MLT1L LTR MaLR 1 607 -8 336 245 77 84 chr15 58979966 58980121 -42400400 + MIR SINE MIR 59 212 -50 295 226 16 0 chr15 58980797 58980859 -42399662 - MIR3 SINE MIR -48 160 98 313 301 57 100 chr15 58981069 58981418 -42399103 + L3 LINE CR1 1041 1374 -203 221 275 193 28 chr15 58982806 58982915 -42397606 + MIR SINE MIR 16 142 -66 992 201 91 0 chr15 58982934 58983133 -42397388 - MER58A DNA MER1_type -1 223 7 1110 230 54 45 chr15 58983855 58983935 -42396586 - MER46C DNA MER2_type 0 338 260 2159 128 16 0 chr15 58983935 58984240 -42396281 + AluSg SINE Alu 1 310 0 1110 230 54 45 chr15 58984240 58984494 -42396027 - MER46C DNA MER2_type -78 260 1 285 289 41 21 chr15 58984954 58985051 -42395470 + MER5B DNA MER1_type 1 99 -79 745 282 27 48 chr15 58985294 58985588 -42394933 - LTR16B LTR ERVL -138 326 39 2144 97 3 41 chr15 58987111 58987430 -42393091 + AluSg SINE Alu 1 307 -3 183 234 36 108 chr15 58988878 58988989 -42391532 + MER5C DNA MER1_type 61 163 -161 23 0 0 0 chr15 58989103 58989126 -42391395 + AT_rich Low_complexity Low_complexity 1 23 0 324 70 0 0 chr15 58990024 58990067 -42390454 + (T)n Simple_repeat Simple_repeat 1 43 0 422 307 16 0 chr15 58991270 58991397 -42389124 - MER20B DNA MER1_type -620 163 35 501 17 0 0 chr15 58991675 58991733 -42388788 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 520 185 169 8 chr15 58991859 58991989 -42388532 + MLT1E1 LTR MaLR 1 151 -503 498 177 186 18 chr15 58992095 58992208 -42388313 + MLT1E1 LTR MaLR 304 435 -191 230 150 0 0 chr15 58992205 58992245 -42388276 + MLT1E1 LTR MaLR 585 624 0 * 276 272 88 9 chr15 58992249 58992363 -42388158 + L2 LINE L2 2628 2750 -564 1437 195 35 11 chr15 58992446 58992733 -42387788 + AluJo SINE Alu 1 294 -18 193 295 51 26 chr15 58992758 58992836 -42387685 + L2 LINE L2 2744 2823 -491 933 136 6 19 chr15 58993145 58993307 -42387214 - AluSx SINE Alu -152 160 1 822 256 33 0 chr15 58993334 58993549 -42386972 + MER58A DNA MER1_type 3 224 0 630 182 0 61 chr15 58993601 58993733 -42386788 + FLAM_A SINE Alu 4 127 -6 2122 148 0 0 chr15 58993861 58994172 -42386349 + AluSx SINE Alu 1 311 -1 270 63 32 63 chr15 58994196 58994259 -42386262 + (GGAAA)n Simple_repeat Simple_repeat 3 63 0 444 283 54 2 chr15 58995197 58995349 -42385172 + MIR3 SINE MIR 51 205 -3 657 191 0 33 chr15 58997573 58997756 -42382765 + (TATATG)n Simple_repeat Simple_repeat 1 177 0 238 133 0 0 chr15 58997760 58997805 -42382716 + L1MC4 LINE L1 6659 6703 -1339 267 189 0 0 chr15 58997805 58997858 -42382663 + (TATG)n Simple_repeat Simple_repeat 1 53 0 365 240 125 31 chr15 59001093 59001189 -42379332 + L2 LINE L2 3207 3311 -2 1690 91 0 0 chr15 59001220 59001440 -42379081 - AluSg/x SINE Alu 0 312 93 212 300 36 91 chr15 59001501 59001611 -42378910 + L2 LINE L2 3187 3290 -23 836 130 15 0 chr15 59001913 59002044 -42378477 + MER5A DNA MER1_type 57 189 0 4298 164 36 57 chr15 59002159 59003793 -42376728 - L1MB7 LINE L1 -8 6176 4581 404 339 26 0 chr15 59004400 59004515 -42376006 + MIR3 SINE MIR 51 168 -40 6607 122 6 13 chr15 59005541 59006596 -42373925 + L1MA5 LINE L1 5254 6300 0 27 29 0 0 chr15 59006747 59006781 -42373740 + AT_rich Low_complexity Low_complexity 1 34 0 32 26 0 0 chr15 59007071 59007110 -42373411 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr15 59007696 59007717 -42372804 + AT_rich Low_complexity Low_complexity 1 21 0 188 190 0 103 chr15 59008270 59008328 -42372193 - MIR SINE MIR 0 262 211 317 315 27 9 chr15 59008337 59008448 -42372073 + MIR SINE MIR 31 143 -119 820 169 0 0 chr15 59008455 59008579 -42371942 + FLAM_C SINE Alu 1 124 -19 302 314 91 34 chr15 59009680 59009976 -42370545 - L1ME4a LINE L1 -224 5897 5585 24 91 0 0 chr15 59010601 59010667 -42369854 + AT_rich Low_complexity Low_complexity 1 66 0 1647 160 38 51 chr15 59015328 59015641 -42364880 - AluJb SINE Alu -3 309 1 38 22 0 0 chr15 59016156 59016201 -42364320 + AT_rich Low_complexity Low_complexity 1 45 0 32 26 0 0 chr15 59016226 59016265 -42364256 + AT_rich Low_complexity Low_complexity 1 39 0 9147 195 57 41 chr15 59016793 59019014 -42361507 - Cheshire DNA MER1_type -1 2419 1 1492 229 80 7 chr15 59019165 59019628 -42360893 + L1MC2 LINE L1 3929 4425 -1721 372 240 70 3 chr15 59019657 59019786 -42360735 + L1MC2 LINE L1 4883 5016 -1130 1301 165 0 9 chr15 59019786 59020004 -42360517 + AluJb SINE Alu 76 291 -21 5596 177 27 19 chr15 59020030 59021330 -42359191 + L1MC2 LINE L1 5009 6320 -24 645 60 86 0 chr15 59071377 59071643 -42308878 + (TA)n Simple_repeat Simple_repeat 1 289 0 35 63 0 0 chr15 59071643 59071706 -42308815 + AT_rich Low_complexity Low_complexity 1 63 0 200 278 113 87 chr15 59071784 59071899 -42308622 + L2 LINE L2 3155 3272 0 3822 164 34 28 chr15 59072324 59072480 -42308041 + L1PB4 LINE L1 5007 5161 -995 1694 183 7 0 chr15 59072480 59072764 -42307757 + AluJb SINE Alu 1 286 -26 3822 164 34 28 chr15 59072764 59073571 -42306950 + L1PB4 LINE L1 5161 5959 -197 7450 85 16 2 chr15 59073641 59074678 -42305843 + L1MA3 LINE L1 5254 6305 0 753 234 5 21 chr15 59074693 59074885 -42305636 + L1PB4 LINE L1 5966 6154 -2 31 0 0 0 chr15 59074887 59074918 -42305603 + AT_rich Low_complexity Low_complexity 1 31 0 2218 92 3 7 chr15 59075706 59076001 -42304520 + AluSq SINE Alu 1 294 -19 207 133 0 44 chr15 59076115 59076160 -42304361 + (CAAAT)n Simple_repeat Simple_repeat 2 44 0 38 30 0 30 chr15 59076929 59076948 -42303573 + AT_rich Low_complexity Low_complexity 1 19 -46 1120 56 0 0 chr15 59076948 59077092 -42303429 + L1PA5 LINE L1 6004 6147 -7 38 30 0 30 chr15 59077092 59077139 -42303382 + AT_rich Low_complexity Low_complexity 19 65 0 218 234 161 44 chr15 59077336 59077473 -42303048 - MIR SINE MIR 0 262 110 1971 125 3 7 chr15 59077493 59077790 -42302731 + AluSx SINE Alu 1 296 -16 22679 36 4 9 chr15 59078469 59082003 -42298518 - L1PA5 LINE L1 -42 6112 2587 309 109 0 0 chr15 59082101 59082147 -42298374 + (TA)n Simple_repeat Simple_repeat 1 46 0 23 33 0 0 chr15 59082192 59082222 -42298299 + AT_rich Low_complexity Low_complexity 1 30 0 1808 145 31 42 chr15 59083083 59083442 -42297079 + L1PB4 LINE L1 5788 6142 -14 1023 149 98 0 chr15 59084106 59084300 -42296221 - L1MA7 LINE L1 -436 5855 5643 871 148 0 7 chr15 59084300 59084442 -42296079 - Tigger7 DNA MER2_type 0 2487 2347 751 155 8 0 chr15 59084442 59084571 -42295950 - L1MA7 LINE L1 -654 5637 5508 23 33 0 0 chr15 59085511 59085541 -42294980 + AT_rich Low_complexity Low_complexity 1 30 0 296 339 64 46 chr15 59086667 59087134 -42293387 + L2 LINE L2 2594 3062 -210 5923 162 104 21 chr15 59087914 59089207 -42291314 - Charlie1a DNA MER1_type -1 1454 54 276 324 81 18 chr15 59090235 59090346 -42290175 + L2 LINE L2 3154 3271 -1 878 263 95 0 chr15 59091223 59091455 -42289066 + MIR SINE MIR 6 259 -3 1133 224 150 59 chr15 59091878 59092437 -42288084 + HAL1 LINE L1 1490 2099 -408 801 121 0 0 chr15 59092438 59092554 -42287967 + MSTB LTR MaLR 1 116 -310 1199 139 27 5 chr15 59092555 59092742 -42287779 + MSTB LTR MaLR 236 426 0 418 277 153 29 chr15 59092759 59093106 -42287415 + HAL1 LINE L1 2112 2501 -6 262 297 18 18 chr15 59095886 59095997 -42284524 + GA-rich Low_complexity Low_complexity 3 113 0 315 320 58 13 chr15 59096082 59096238 -42284283 + L1ME LINE L1 5558 5720 -401 23 33 0 0 chr15 59097404 59097434 -42283087 + AT_rich Low_complexity Low_complexity 1 30 0 246 309 62 31 chr15 59097447 59097609 -42282912 - MIR SINE MIR -72 190 24 488 45 97 0 chr15 59099329 59099463 -42281058 + (TA)n Simple_repeat Simple_repeat 2 148 0 202 270 0 0 chr15 59100450 59100487 -42280034 - L2 LINE L2 -15 3298 3262 542 56 14 0 chr15 59100548 59100619 -42279902 + MADE1 DNA Mariner 9 80 0 216 216 0 0 chr15 59101043 59101094 -42279427 + GA-rich Low_complexity Low_complexity 1 51 0 28 0 0 0 chr15 59102363 59102391 -42278130 + AT_rich Low_complexity Low_complexity 1 28 0 1999 103 6 48 chr15 59102444 59102756 -42277765 + AluSg SINE Alu 1 299 -11 240 214 0 0 chr15 59103352 59103408 -42277113 + T-rich Low_complexity Low_complexity 1 56 0 10732 23 2 0 chr15 59103409 59105438 -42275083 - L1PA4 LINE L1 -3 6152 4119 1735 153 0 38 chr15 59105813 59106127 -42274394 + AluSx SINE Alu 1 302 -10 318 276 55 61 chr15 59106632 59106795 -42273726 - MIR SINE MIR -50 212 51 586 339 6 12 chr15 59107211 59107379 -42273142 - MIR3 SINE MIR -21 187 21 2338 73 13 7 chr15 59107695 59107998 -42272523 + AluY SINE Alu 1 305 -6 331 312 87 23 chr15 59108894 59109067 -42271454 - MIR3 SINE MIR -9 199 16 2103 55 14 4 chr15 59109773 59110048 -42270473 + L1PA8 LINE L1 5894 6171 -1 276 250 105 0 chr15 59110236 59110312 -42270209 - MIR SINE MIR -114 148 65 2122 78 0 49 chr15 59110535 59110841 -42269680 - AluY SINE Alu -20 291 1 831 210 95 5 chr15 59111165 59111365 -42269156 - MER20 DNA MER1_type -1 218 1 7709 53 12 5 chr15 59111451 59112450 -42268071 + LTR13 LTR ERVK 2 1007 0 180 214 24 0 chr15 59113180 59113222 -42267299 - MIR3 SINE MIR -36 172 130 21 57 0 0 chr15 59113385 59113420 -42267101 + AT_rich Low_complexity Low_complexity 1 35 0 245 143 122 0 chr15 59113420 59113469 -42267052 - MIR SINE MIR -73 135 81 1031 201 20 0 chr15 59113809 59114008 -42266513 - MER2 DNA MER2_type -142 203 1 960 187 0 0 chr15 59114071 59114242 -42266279 + FRAM SINE Alu 1 171 -5 948 153 92 76 chr15 59114286 59114600 -42265921 - MER33 DNA MER1_type 0 324 6 854 142 0 0 chr15 59116231 59116396 -42264125 - FRAM SINE Alu 0 176 12 283 308 50 44 chr15 59117224 59117406 -42263115 + L2 LINE L2 2575 2757 -557 387 198 45 81 chr15 59117861 59117972 -42262549 - MIR SINE MIR -76 186 80 607 231 46 40 chr15 59118760 59118933 -42261588 - MIR3 SINE MIR -15 193 20 334 218 136 9 chr15 59119561 59119671 -42260850 - MIR SINE MIR -48 214 91 1872 165 10 0 chr15 59119899 59120196 -42260325 + AluJb SINE Alu 1 300 -12 1830 167 0 7 chr15 59120271 59120564 -42259957 + AluJb SINE Alu 1 291 -21 1677 6 0 0 chr15 59120797 59120980 -42259541 - L1HS LINE L1 -276 5879 5697 1630 39 0 0 chr15 59120976 59121179 -42259342 + L1P LINE L1 5024 5226 -920 * 359 213 0 0 chr15 59121715 59121795 -42258726 + MIR SINE MIR 151 230 -32 243 284 15 0 chr15 59121964 59122031 -42258490 + L2 LINE L2 1853 1920 -1394 298 323 53 23 chr15 59122597 59122730 -42257791 + MIR3 SINE MIR 10 146 -62 376 230 42 67 chr15 59122807 59122972 -42257549 + MER103 DNA DNA 3 163 -3 333 0 0 0 chr15 59124202 59124239 -42256282 + (TG)n Simple_repeat Simple_repeat 2 38 0 303 218 11 46 chr15 59124771 59124858 -42255663 + L2 LINE L2 3188 3271 -1 432 294 128 5 chr15 59124908 59125112 -42255409 - MIR SINE MIR -30 232 4 391 257 97 14 chr15 59125246 59125390 -42255131 + MIR SINE MIR 70 225 -37 582 193 44 15 chr15 59125764 59125899 -42254622 - L1ME3 LINE L1 0 6162 6024 224 289 62 31 chr15 59126061 59126158 -42254363 - MIR SINE MIR -46 216 117 364 257 163 94 chr15 59127254 59127881 -42252640 + L1M2 LINE L1 757 1426 -5423 243 239 0 45 chr15 59128373 59128440 -42252081 - MIR3 SINE MIR -8 200 137 339 184 175 19 chr15 59128514 59128617 -42251904 - MIR SINE MIR -72 136 18 1769 136 11 4 chr15 59128678 59128957 -42251564 + AluJb SINE Alu 1 281 -31 180 0 0 0 chr15 59128960 59128980 -42251541 + (TAA)n Simple_repeat Simple_repeat 2 21 0 309 240 380 0 chr15 59128983 59129104 -42251417 - MIR SINE MIR -54 208 42 21 36 0 0 chr15 59129587 59129615 -42250906 + AT_rich Low_complexity Low_complexity 1 28 0 820 233 6 0 chr15 59129671 59129851 -42250670 - FRAM SINE Alu -4 172 1 309 267 75 86 chr15 59130603 59130657 -42249864 - MIR3 SINE MIR -1 207 154 2181 90 7 7 chr15 59130657 59130968 -42249553 + AluSg SINE Alu 2 312 0 309 267 75 86 chr15 59130968 59131099 -42249422 - MIR3 SINE MIR -54 154 23 731 219 52 30 chr15 59132085 59132318 -42248203 - L1ME3 LINE L1 -172 5992 5755 * 1079 198 53 22 chr15 59132311 59132531 -42247990 - L1MCb LINE L1 -4036 2528 2293 1456 108 85 0 chr15 59132531 59132743 -42247778 - MER30 DNA MER1_type 0 230 1 1079 198 53 22 chr15 59132743 59132841 -42247680 - L1MCb LINE L1 -4271 2293 2200 * 4276 219 100 21 chr15 59132839 59134227 -42246294 - L1MCb LINE L1 -4851 1194 4 1494 201 4 11 chr15 59134297 59134576 -42245945 - L1ME3 LINE L1 -395 5769 5493 605 155 0 19 chr15 59134607 59134710 -42245811 + Tigger5 DNA MER2_type 1 101 -2222 2165 107 7 13 chr15 59134893 59135201 -42245320 + AluSg SINE Alu 1 306 -4 603 282 40 19 chr15 59135586 59135818 -42244703 + MIR SINE MIR 23 256 -6 2261 88 0 0 chr15 59136052 59136367 -42244154 - AluSx SINE Alu 0 315 1 281 306 179 22 chr15 59137221 59137240 -42243281 - MIR3 SINE MIR -38 170 155 2124 118 3 16 chr15 59137240 59137545 -42242976 - AluSc SINE Alu -8 301 1 281 306 179 22 chr15 59137545 59137659 -42242862 - MIR3 SINE MIR -53 155 16 26 64 0 0 chr15 59137836 59137883 -42242638 + AT_rich Low_complexity Low_complexity 1 47 0 2212 129 0 3 chr15 59137996 59138348 -42242173 - AluSx SINE Alu 0 351 1 221 233 0 50 chr15 59139129 59139189 -42241332 - L2 LINE L2 -13 3300 3244 405 290 152 0 chr15 59139204 59139342 -42241179 + MIR3 SINE MIR 2 160 -48 355 298 64 35 chr15 59139347 59139518 -42241003 + MER117 DNA MER1_type 6 181 -16 191 347 0 28 chr15 59139732 59139804 -42240717 - L2 LINE L2 -208 3064 2995 26 0 0 0 chr15 59139844 59139870 -42240651 + AT_rich Low_complexity Low_complexity 1 26 0 312 272 95 45 chr15 59139983 59140128 -42240393 - MIR SINE MIR -62 146 45 582 133 80 66 chr15 59140599 59140750 -42239771 - LTR33A LTR ERVL -9 514 362 264 308 156 57 chr15 59140789 59140897 -42239624 - L2 LINE L2 -40 3273 3177 2142 125 7 0 chr15 59140897 59141194 -42239327 + AluSq SINE Alu 1 299 -14 264 308 156 57 chr15 59141194 59141400 -42239121 - L2 LINE L2 -136 3177 2928 213 220 0 0 chr15 59142148 59142198 -42238323 + (CAT)n Simple_repeat Simple_repeat 3 52 0 7885 90 4 16 chr15 59143450 59144520 -42236001 - MER11C LTR ERVK -14 1057 1 826 208 12 18 chr15 59144619 59144787 -42235734 - FAM SINE Alu -4 171 5 1573 281 23 24 chr15 59144920 59145595 -42234926 - L2 LINE L2 -114 3199 2536 473 315 22 22 chr15 59146336 59146514 -42234007 + MER117 DNA MER1_type 4 181 -16 476 201 238 6 chr15 59146796 59146960 -42233561 - MIR SINE MIR -13 249 48 685 286 17 34 chr15 59147749 59147987 -42232534 + MIR SINE MIR 29 262 0 378 0 0 0 chr15 59148127 59148169 -42232352 + (TC)n Simple_repeat Simple_repeat 1 42 0 244 287 30 10 chr15 59148286 59148387 -42232134 - MLT1K LTR MaLR -320 268 166 24 32 0 0 chr15 59148690 59148721 -42231800 + AT_rich Low_complexity Low_complexity 1 31 0 2532 132 42 5 chr15 59149480 59149888 -42230633 + MSTA LTR MaLR 6 428 0 1132 220 111 10 chr15 59149888 59150278 -42230243 - L1MD2 LINE L1 -77 6089 5669 353 274 0 24 chr15 59150276 59150400 -42230121 + L1ME3A LINE L1 6043 6163 -7 * 2098 118 0 7 chr15 59150651 59150940 -42229581 - AluSx SINE Alu -20 292 6 595 233 16 8 chr15 59152421 59152550 -42227971 + LTR67 LTR ERVL 428 557 0 276 282 24 117 chr15 59153372 59153578 -42226943 + MER91B DNA MER1_type 1 187 -3 1569 242 93 22 chr15 59154037 59154500 -42226021 + MER20B DNA MER1_type 1 496 -287 1984 115 17 0 chr15 59154631 59154919 -42225602 + AluSx SINE Alu 1 293 -19 2466 79 0 3 chr15 59155444 59155749 -42224772 - AluY SINE Alu -7 304 1 21 0 0 0 chr15 59155755 59155776 -42224745 + AT_rich Low_complexity Low_complexity 1 21 0 694 238 32 0 chr15 59155798 59155983 -42224538 + MER20B DNA MER1_type 509 699 -84 2265 93 3 0 chr15 59155983 59156272 -42224249 - AluSc SINE Alu -17 292 3 712 256 107 0 chr15 59156797 59157031 -42223490 - LTR33A LTR ERVL 0 523 265 773 161 0 44 chr15 59157329 59157466 -42223055 - FLAM_A SINE Alu -2 131 1 294 274 95 37 chr15 59158226 59158416 -42222105 + MER112 DNA MER1_type 1 201 -59 8043 34 0 0 chr15 59159102 59160700 -42219821 + L1PA4 LINE L1 4557 6155 0 229 333 0 26 chr15 59160854 59160932 -42219589 - MIR SINE MIR -150 112 37 479 345 80 26 chr15 59161663 59161927 -42218594 - MLT1K LTR MaLR -284 304 27 254 184 122 0 chr15 59162121 59162170 -42218351 + MER69 DNA AcHobo 2 56 -2470 * 1929 171 56 63 chr15 59162158 59162258 -42218263 + MER69 DNA AcHobo 2051 2150 -376 2101 109 25 0 chr15 59162258 59162541 -42217980 + AluSp SINE Alu 1 290 -23 1929 171 56 63 chr15 59162541 59162919 -42217602 + MER69 DNA AcHobo 2150 2526 0 313 299 92 24 chr15 59162977 59163141 -42217380 - MLT1K LTR MaLR -240 348 174 510 219 29 0 chr15 59163308 59163413 -42217108 + MER96B DNA MER1_type? 3 110 -307 445 218 0 78 chr15 59164261 59164403 -42216118 + MIR3 SINE MIR 70 200 -8 696 204 22 61 chr15 59164636 59164867 -42215654 - LTR16B LTR ERVL 0 464 243 1612 200 6 9 chr15 59164878 59165198 -42215323 - MLT1B LTR MaLR 0 390 72 7231 125 10 34 chr15 59165199 59166153 -42214368 + Tigger1 DNA MER2_type 1 987 -1431 2094 134 0 7 chr15 59166153 59166459 -42214062 + AluSx SINE Alu 9 312 0 7231 125 10 34 chr15 59166459 59167030 -42213491 + Tigger1 DNA MER2_type 987 1570 -848 347 353 30 0 chr15 59167603 59167736 -42212785 + MIR SINE MIR 47 183 -79 742 159 0 0 chr15 59168421 59168547 -42211974 + L1MA7 LINE L1 6166 6291 0 257 279 23 0 chr15 59168753 59168839 -42211682 + (TA)n Simple_repeat Simple_repeat 2 89 0 360 296 104 8 chr15 59169341 59169466 -42211055 - MIR3 SINE MIR -49 159 23 2092 133 0 9 chr15 59170765 59171080 -42209441 - AluJo SINE Alu 0 312 1 375 310 93 8 chr15 59172345 59172498 -42208023 - MIR SINE MIR -77 131 8 1338 296 122 86 chr15 59173373 59173580 -42206941 - L3 LINE CR1 -24 1553 1355 1810 162 0 23 chr15 59173580 59173889 -42206632 - AluJb SINE Alu -9 303 2 1338 296 122 86 chr15 59173889 59174814 -42205707 - L3 LINE CR1 -222 1355 369 2186 53 8 0 chr15 59174814 59175078 -42205443 + AluSp SINE Alu 3 268 -45 1338 296 122 86 chr15 59175078 59175200 -42205321 - L3 LINE CR1 -1208 369 253 2406 86 0 3 chr15 59175617 59175919 -42204602 - AluSq SINE Alu -12 301 1 2399 87 3 0 chr15 59176016 59176315 -42204206 - AluSq SINE Alu -13 300 1 2203 83 55 0 chr15 59176432 59176721 -42203800 - AluSp SINE Alu -8 305 1 1849 144 4 0 chr15 59176910 59177181 -42203340 + MER7A DNA MER2_type 1 270 -76 303 88 35 105 chr15 59177198 59177255 -42203266 + Tigger3(Golem) DNA MER2_type 2873 2925 -104 377 315 117 11 chr15 59178406 59178592 -42201929 - MIR SINE MIR -25 237 32 905 152 37 12 chr15 59179237 59179401 -42201120 - L1MB7 LINE L1 -19 6165 5998 489 305 63 23 chr15 59179958 59180132 -42200389 + L2 LINE L2 3131 3311 -2 2868 133 65 15 chr15 59180576 59181056 -42199465 - MER41B LTR ERV1 0 635 132 293 275 22 33 chr15 59182763 59182854 -42197667 + L2 LINE L2 3224 3313 0 324 264 168 48 chr15 59183104 59183222 -42197299 + MIR3 SINE MIR 13 158 -50 570 312 26 5 chr15 59183222 59183411 -42197110 + MER117 DNA MER1_type 2 194 -3 324 264 168 48 chr15 59183411 59183459 -42197062 + MIR3 SINE MIR 158 199 -9 779 296 24 8 chr15 59183523 59183770 -42196751 - MIR SINE MIR -4 258 8 2295 133 54 20 chr15 59185847 59186199 -42194322 - THE1B LTR MaLR 0 364 1 352 293 25 50 chr15 59186255 59186453 -42194068 - L1M4 LINE L1 -1337 4809 4617 269 272 114 27 chr15 59186521 59186922 -42193599 + L1M4 LINE L1 4914 5342 -812 1603 206 57 64 chr15 59186981 59187102 -42193419 - MER110A LTR ERV1 0 468 348 2448 88 0 0 chr15 59187102 59187407 -42193114 + AluY SINE Alu 1 305 -6 1603 206 57 64 chr15 59187407 59187756 -42192765 - MER110A LTR ERV1 -120 348 1 432 271 94 70 chr15 59187816 59188291 -42192230 + L1MCc LINE L1 5 833 -5589 2310 243 120 17 chr15 59188522 59189846 -42190675 + L1MCc LINE L1 978 2164 -4777 2324 110 0 0 chr15 59189846 59190154 -42190367 + AluSx SINE Alu 1 308 -4 2310 243 120 17 chr15 59190154 59190949 -42189572 + L1MCc LINE L1 2164 3458 -3483 454 316 86 55 chr15 59190965 59191620 -42188901 + ERVL LTR ERVL 1121 1795 -3969 1722 202 50 0 chr15 59191625 59191942 -42188579 - MER58B DNA MER1_type 0 341 9 387 0 0 0 chr15 59192691 59192734 -42187787 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 7685 55 0 1 chr15 59192740 59194149 -42186372 - L1PA8 LINE L1 -13 6159 4753 474 284 26 20 chr15 59194405 59194589 -42185932 + MIR SINE MIR 23 203 -59 273 167 0 0 chr15 59194615 59194663 -42185858 - L1PA16 LINE L1 0 6166 6119 299 282 113 9 chr15 59195486 59195603 -42184918 - MIR SINE MIR -62 146 40 182 231 0 0 chr15 59197626 59197665 -42182856 + MIR SINE MIR 40 78 -184 360 43 0 0 chr15 59197881 59197927 -42182594 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 1200 96 28 11 chr15 59198310 59198487 -42182034 + LTR54 LTR ERV1 1 180 -330 2378 88 0 0 chr15 59198654 59198949 -42181572 - AluSx SINE Alu -17 295 1 271 299 8 55 chr15 59199098 59199121 -42181400 + MIR SINE MIR 53 76 -186 1962 191 99 64 chr15 59199121 59199607 -42180914 - MLT1D LTR MaLR -2 503 1 271 299 8 55 chr15 59199607 59199710 -42180811 + MIR SINE MIR 76 173 -89 264 277 31 15 chr15 59199781 59199846 -42180675 - L2 LINE L2 0 3313 3248 904 196 0 0 chr15 59200745 59200908 -42179613 + FRAM SINE Alu 1 163 -13 3277 121 40 28 chr15 59201021 59201304 -42179217 - MER34B LTR ERV1 -12 553 258 2445 136 12 50 chr15 59201304 59201723 -42178798 - MER57A LTR ERV1 0 403 1 3277 121 40 28 chr15 59201723 59201985 -42178536 - MER34B LTR ERV1 -307 258 1 2982 29 0 0 chr15 59202660 59203006 -42177515 - L1PA2 LINE L1 -1442 4704 4359 8289 14 4 2 chr15 59203006 59204465 -42176056 + L1PA2 LINE L1 4718 6179 0 1930 147 0 0 chr15 59204619 59204934 -42175587 - AluSx SINE Alu 0 315 1 328 226 85 9 chr15 59205155 59205261 -42175260 - MIR SINE MIR -55 207 94 375 23 0 0 chr15 59207464 59207508 -42173013 + (TG)n Simple_repeat Simple_repeat 1 44 0 456 264 9 9 chr15 59208134 59208244 -42172277 - L2 LINE L2 -15 3298 3189 509 321 20 25 chr15 59208689 59208885 -42171636 - MIR SINE MIR -34 228 34 740 233 85 27 chr15 59210550 59210773 -42169748 + MIR SINE MIR 17 252 -10 478 294 95 35 chr15 59211893 59212124 -42168397 - MIR SINE MIR -6 256 12 387 236 102 64 chr15 59213601 59213758 -42166763 + MIR SINE MIR 33 195 -67 582 307 82 43 chr15 59214094 59214351 -42166170 - L2 LINE L2 -14 3258 2992 368 215 39 54 chr15 59214903 59215033 -42165488 + L1MC4 LINE L1 7911 8038 -4 247 244 0 0 chr15 59215817 59215862 -42164659 + polypyrimidine Low_complexity Low_complexity 1 45 0 389 188 38 0 chr15 59215866 59215946 -42164575 - LTR16A LTR ERVL -44 406 324 551 226 47 55 chr15 59216082 59216266 -42164255 - L1MC5 LINE L1 -201 7760 7577 324 0 0 0 chr15 59216266 59216302 -42164219 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 551 226 47 55 chr15 59216302 59216374 -42164147 - L1MC5 LINE L1 -384 7577 7506 741 131 25 0 chr15 59216375 59216497 -42164024 - L1MA5A LINE L1 0 6297 6173 230 219 62 0 chr15 59216611 59216675 -42163846 + MLT1L LTR MaLR 166 233 -382 4915 184 90 98 chr15 59216830 59218528 -42161993 + L1MA6 LINE L1 2967 4678 -3041 1008 245 84 20 chr15 59218528 59218885 -42161636 + MSTC LTR MaLR 1 428 0 4915 184 90 98 chr15 59218885 59221268 -42159253 + L1MA6 LINE L1 4678 7332 -387 263 61 0 0 chr15 59221271 59221304 -42159217 - L1M2a LINE L1 -7135 33 1 183 152 0 0 chr15 59221325 59221371 -42159150 + (TA)n Simple_repeat Simple_repeat 1 46 0 192 308 19 0 chr15 59221510 59221562 -42158959 - L3 LINE CR1 -250 1327 1275 265 301 122 16 chr15 59221670 59221793 -42158728 + MIR3 SINE MIR 36 171 -37 441 219 136 19 chr15 59222186 59222341 -42158180 - MIR SINE MIR -78 184 12 21 0 0 0 chr15 59223484 59223505 -42157016 + GC_rich Low_complexity Low_complexity 1 21 0 548 207 12 12 chr15 59223773 59223937 -42156584 + CT-rich Low_complexity Low_complexity 1 164 0 1539 158 28 49 chr15 59223937 59224222 -42156299 - AluJo SINE Alu -33 279 1 223 208 21 0 chr15 59224735 59224783 -42155738 + GA-rich Low_complexity Low_complexity 2 50 0 694 229 139 96 chr15 59225691 59226080 -42154441 + MER110 LTR ERV1 83 466 -9 1351 107 0 14 chr15 59226302 59226517 -42154004 - pTR5 LTR ERV1 -2046 392 181 300 277 18 18 chr15 59226519 59226631 -42153890 - LTR30 LTR ERV1 -67 655 544 3035 140 124 20 chr15 59226635 59227254 -42153267 - pTR5 LTR ERV1 -417 2021 1146 231 36 0 0 chr15 59227604 59227632 -42152889 + (TA)n Simple_repeat Simple_repeat 2 29 0 2065 155 5 29 chr15 59229280 59229666 -42150855 + L1MA4 LINE L1 4628 5004 -1142 3805 138 17 5 chr15 59229666 59230261 -42150260 + L1MA5A LINE L1 5689 6291 -6 538 136 12 0 chr15 59230317 59230398 -42150123 - FLAM SINE Alu -20 123 42 6119 130 27 37 chr15 59230460 59230791 -42149730 + L1MA4 LINE L1 4993 5326 -974 1653 170 18 11 chr15 59230791 59231074 -42149447 + AluJo SINE Alu 6 290 -22 6119 130 27 37 chr15 59231074 59232040 -42148481 + L1MA4 LINE L1 5326 6293 -7 200 149 0 95 chr15 59232918 59232992 -42147529 + (TTTTTG)n Simple_repeat Simple_repeat 5 71 0 9794 68 13 40 chr15 59233002 59233915 -42146606 - HERVK14 LTR ERVK -637 5308 4441 2294 81 3 3 chr15 59233915 59234210 -42146311 - AluY SINE Alu -16 295 1 9794 68 13 40 chr15 59234210 59234664 -42145857 - HERVK14 LTR ERVK -1504 4441 3977 11798 84 7 7 chr15 59234668 59236034 -42144487 - HERVK14 LTR ERVK -4392 1553 184 2266 88 0 3 chr15 59236034 59236359 -42144162 + AluY SINE Alu 1 324 0 11798 84 7 7 chr15 59236359 59236544 -42143977 - HERVK14 LTR ERVK -5760 185 1 2181 65 5 174 chr15 59236545 59236958 -42143563 - LTR14A LTR ERVK -1 343 1 2954 121 37 118 chr15 59237002 59237731 -42142790 + MER4B-int LTR ERV1 5282 5951 -807 1505 138 6 117 chr15 59237740 59238073 -42142448 - AluJb SINE Alu -16 296 1 979 245 35 19 chr15 59238075 59238336 -42142185 + MER4B-int LTR ERV1 6053 6317 -441 2767 123 40 15 chr15 59238336 59238791 -42141730 + MER50 LTR ERV1 1 466 -268 266 95 24 0 chr15 59238918 59238960 -42141561 - MSTC LTR MaLR -385 43 1 1249 57 23 34 chr15 59239250 59239427 -42141094 - L1PA6 LINE L1 -2 6152 5978 21 57 0 0 chr15 59239679 59239714 -42140807 + AT_rich Low_complexity Low_complexity 1 35 0 296 191 0 16 chr15 59240283 59240346 -42140175 + MIR SINE MIR 112 173 -89 207 304 0 18 chr15 59240365 59240421 -42140100 - MIR SINE MIR -151 111 57 25 31 0 0 chr15 59240650 59240682 -42139839 + AT_rich Low_complexity Low_complexity 1 32 0 1081 161 44 1 chr15 59241525 59241776 -42138745 - MER33 DNA MER1_type -77 247 1 306 314 102 0 chr15 59242142 59242279 -42138242 - L1ME4a LINE L1 -217 5904 5754 778 298 78 19 chr15 59242597 59242916 -42137605 + LTR16A LTR ERVL 113 450 0 1911 246 30 13 chr15 59243772 59244231 -42136290 + MLT1C LTR MaLR 1 467 0 278 362 43 35 chr15 59244565 59244706 -42135815 - MIR3 SINE MIR -27 181 40 234 272 81 44 chr15 59245172 59245308 -42135213 - MIR SINE MIR -24 238 98 2108 126 3 22 chr15 59245308 59245626 -42134895 + AluSq SINE Alu 1 312 -1 264 300 156 0 chr15 59245649 59245739 -42134782 - MIR SINE MIR -87 121 18 294 336 45 0 chr15 59246079 59246189 -42134332 - L3 LINE CR1 -72 1505 1391 239 228 69 118 chr15 59246189 59246259 -42134262 + L1ME3 LINE L1 4981 5053 -1093 2495 145 6 3 chr15 59246259 59246624 -42133897 - MER47A DNA MER2_type 0 366 1 239 228 69 118 chr15 59246624 59246799 -42133722 + L1ME3 LINE L1 5053 5214 -932 781 156 15 7 chr15 59246807 59246942 -42133579 - MLT1B LTR MaLR -254 136 1 1192 153 0 0 chr15 59246975 59247152 -42133369 + AluJb SINE Alu 1 177 -135 1380 135 154 18 chr15 59247153 59247435 -42133086 - MLT1A1 LTR MaLR -42 348 2 447 300 202 15 chr15 59247440 59247767 -42132754 + L1ME3 LINE L1 5485 5866 -296 325 244 166 83 chr15 59248403 59248632 -42131889 + MIR SINE MIR 13 260 -2 227 287 22 110 chr15 59248779 59248915 -42131606 + MIR SINE MIR 18 141 -121 1226 185 4 2 chr15 59249350 59249628 -42130893 + MER2 DNA MER2_type 6 330 -15 183 204 0 0 chr15 59249842 59249891 -42130630 + GA-rich Low_complexity Low_complexity 4 52 0 187 253 93 13 chr15 59249967 59250042 -42130479 + MIR SINE MIR 115 195 -67 349 241 0 46 chr15 59250111 59250198 -42130323 - L2 LINE L2 -8 3264 3182 263 244 65 73 chr15 59250597 59250720 -42129801 + MIR SINE MIR 26 147 -61 277 83 0 0 chr15 59250905 59250941 -42129580 - U2 snRNA snRNA -152 36 1 1022 161 31 51 chr15 59251219 59251474 -42129047 - pTR5 LTR ERV1 -1446 992 743 207 273 136 38 chr15 59253242 59253374 -42127147 + MIR SINE MIR 8 152 -110 245 352 50 57 chr15 59253484 59253643 -42126878 + L2 LINE L2 2936 3093 -179 379 262 148 46 chr15 59253664 59253901 -42126620 + MIR SINE MIR 2 262 0 226 286 43 0 chr15 59254137 59254207 -42126314 + MER45C DNA AcHobo 2 74 -879 * 1486 283 60 9 chr15 59254205 59254651 -42125870 + MER45C DNA AcHobo 445 913 -40 482 311 99 71 chr15 59254824 59255423 -42125098 + L2 LINE L2 2655 3264 -8 1831 177 0 7 chr15 59255840 59256134 -42124387 - AluJb SINE Alu -20 292 1 26 0 0 0 chr15 59256310 59256336 -42124185 + AT_rich Low_complexity Low_complexity 1 26 0 274 325 71 0 chr15 59256852 59257006 -42123515 - L1ME3A LINE L1 -230 5940 5776 180 0 0 0 chr15 59258774 59258794 -42121727 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 336 265 105 37 chr15 59259092 59259254 -42121267 + MIR SINE MIR 78 250 -12 2486 43 0 0 chr15 59259808 59260090 -42120431 + AluY SINE Alu 20 301 -10 2367 97 3 0 chr15 59260488 59260796 -42119725 - AluSg SINE Alu -1 309 1 344 50 0 0 chr15 59260903 59260943 -42119578 - U2 snRNA snRNA -148 40 1 298 252 117 27 chr15 59261200 59261422 -42119099 + L1ME4a LINE L1 5874 6115 -6 2100 137 0 9 chr15 59262220 59262535 -42117986 - AluSx SINE Alu 0 312 1 189 180 80 20 chr15 59262881 59262931 -42117590 + MIR SINE MIR 19 71 -137 233 211 39 96 chr15 59262962 59263066 -42117455 - MIR SINE MIR -54 208 111 201 278 0 0 chr15 59263068 59263122 -42117399 + MIR SINE MIR 203 256 -6 456 144 0 29 chr15 59263508 59263605 -42116916 - MER58 DNA MER1_type -3 2417 250 368 174 42 138 chr15 59263659 59263826 -42116695 + MER58C DNA MER1_type 64 214 -1 2871 167 30 56 chr15 59263917 59264189 -42116332 + L1PB4 LINE L1 3885 4163 -1993 2871 148 19 56 chr15 59264189 59264323 -42116198 + L1PB4 LINE L1 5652 5789 -367 2138 126 3 3 chr15 59264323 59264632 -42115889 + AluSg SINE Alu 1 309 -1 2871 148 19 56 chr15 59264632 59265018 -42115503 + L1PB4 LINE L1 5789 6153 -3 2871 167 30 56 chr15 59265018 59265942 -42114579 + L1PB4 LINE L1 4163 5110 -1046 2253 109 0 10 chr15 59265942 59266253 -42114268 + AluSq SINE Alu 4 311 -2 2871 167 30 56 chr15 59266253 59266675 -42113846 + L1PB4 LINE L1 5110 6153 -3 217 349 32 0 chr15 59267300 59267363 -42113158 - MIR SINE MIR -67 141 77 235 266 16 16 chr15 59267603 59267667 -42112854 - Charlie4 DNA MER1_type -4 1957 1894 4128 131 17 15 chr15 59267789 59267925 -42112596 - L1PA16 LINE L1 -5 6161 6027 2346 81 14 0 chr15 59267925 59268220 -42112301 - AluSq SINE Alu -14 299 1 4128 131 17 15 chr15 59268220 59268732 -42111789 - L1PA16 LINE L1 -139 6027 5512 1274 121 30 0 chr15 59268889 59269088 -42111433 - L1PA16 LINE L1 -649 5507 5303 497 113 0 0 chr15 59269089 59269160 -42111361 - AluSx SINE Alu -11 300 230 1108 137 6 55 chr15 59269161 59269344 -42111177 - AluSx SINE Alu -138 174 1 4446 201 63 25 chr15 59269345 59270433 -42110088 - L1 LINE L1 -835 5311 4182 1234 251 49 18 chr15 59270414 59270804 -42109717 - L1 LINE L1 -3370 2776 2375 * 1229 250 27 24 chr15 59270807 59271103 -42109418 + MER4B-int LTR ERV1 1985 2281 -4050 740 186 17 0 chr15 59271132 59271250 -42109271 - FLAM_C SINE Alu -19 124 5 343 119 0 127 chr15 59271252 59271329 -42109192 + MER4B-int LTR ERV1 2673 2726 -3220 396 164 0 15 chr15 59271380 59271447 -42109074 + MER34C LTR ERV1 160 225 -360 460 169 32 169 chr15 59271513 59271702 -42108819 + MER4B-int LTR ERV1 1190 1352 -3771 * 790 228 38 42 chr15 59271700 59271989 -42108532 + pTR5 LTR ERV1 741 1028 -1410 3829 150 27 65 chr15 59272070 59272783 -42107738 + LTR12 LTR ERV1 3 688 0 779 163 71 59 chr15 59272783 59272826 -42107695 + MER4B-int LTR ERV1 1993 2034 -4724 1936 150 3 10 chr15 59272826 59273126 -42107395 - AluSp SINE Alu -15 298 1 779 163 71 59 chr15 59273126 59273351 -42107170 + MER4B-int LTR ERV1 2034 2874 -3884 515 292 118 6 chr15 59273351 59273512 -42107009 + LTR28 LTR ERV1 1 179 -841 407 182 131 30 chr15 59273540 59273774 -42106747 + LTR27 LTR ERV1 283 486 -15 2025 206 63 22 chr15 59274050 59274541 -42105980 - MER9 LTR ERVK 0 511 1 414 146 55 55 chr15 59274549 59274659 -42105862 + LTR49-int LTR ERV1 3480 3589 -2742 2260 178 39 7 chr15 59274668 59275083 -42105438 + MSTA LTR MaLR 1 428 0 838 130 41 0 chr15 59275083 59275229 -42105292 + MSTA-int LTR MaLR 1 152 -1499 252 54 0 0 chr15 59275227 59275264 -42105257 + L1PB3 LINE L1 6112 6148 -6 * 3022 128 8 29 chr15 59275276 59275734 -42104787 + LTR49-int LTR ERV1 4227 4674 -2084 3276 93 9 13 chr15 59275734 59276185 -42104336 + LTR2 LTR ERV1 1 449 0 3022 128 8 29 chr15 59276185 59276248 -42104273 + LTR49-int LTR ERV1 4674 4737 -2021 551 75 99 205 chr15 59276251 59276462 -42104059 - LTR14A LTR ERVK -209 399 1 955 320 6 6 chr15 59276468 59276796 -42103725 - HERVKC4 LTR ERVK -7 5255 4928 5090 66 25 0 chr15 59276957 59277597 -42102924 + SVA Other Other 730 1385 -1 23 33 0 0 chr15 59277597 59277627 -42102894 + AT_rich Low_complexity Low_complexity 1 30 0 4143 102 20 37 chr15 59277627 59278282 -42102239 + HSMAR1 DNA Mariner 644 1287 0 189 0 0 0 chr15 59279070 59279091 -42101430 + (TA)n Simple_repeat Simple_repeat 2 22 0 1672 91 0 9 chr15 59281759 59281978 -42098543 + AluSq SINE Alu 83 299 -14 219 36 0 0 chr15 59282319 59282347 -42098174 + (CCCTG)n Simple_repeat Simple_repeat 4 31 0 1857 101 105 22 chr15 59283294 59283604 -42096917 - AluSx SINE Alu 0 312 1 249 344 48 8 chr15 59284115 59284240 -42096281 + MIR3 SINE MIR 6 135 -73 374 299 42 65 chr15 59285508 59285722 -42094799 + L1MDa LINE L1 2367 2575 -3965 21 36 0 0 chr15 59285742 59285770 -42094751 + AT_rich Low_complexity Low_complexity 1 28 0 1244 192 90 30 chr15 59286012 59286278 -42094243 + AluJo SINE Alu 1 282 -30 423 52 0 0 chr15 59286280 59286338 -42094183 + (TC)n Simple_repeat Simple_repeat 1 58 0 189 0 0 0 chr15 59286338 59286359 -42094162 + (TA)n Simple_repeat Simple_repeat 2 22 0 2510 161 26 2 chr15 59286836 59287252 -42093269 - MSTB LTR MaLR 0 426 1 189 195 0 0 chr15 59287663 59287704 -42092817 + (CATA)n Simple_repeat Simple_repeat 4 44 0 213 335 111 55 chr15 59288146 59288471 -42092050 - L2 LINE L2 -95 3177 2835 750 225 59 34 chr15 59289269 59289505 -42091016 + MIR SINE MIR 21 262 0 231 236 73 0 chr15 59290145 59290200 -42090321 + L2 LINE L2 3214 3272 0 189 0 0 0 chr15 59291016 59291037 -42089484 + (CAA)n Simple_repeat Simple_repeat 1 21 0 516 98 206 0 chr15 59291667 59291759 -42088762 - MER68 LTR ERV1 -451 111 1 584 151 0 0 chr15 59292133 59292226 -42088295 + AluJ/FLAM SINE Alu 2 94 -218 775 179 0 0 chr15 59292227 59292344 -42088177 + AluJo/FRAM SINE Alu 172 288 -24 4549 99 27 13 chr15 59292832 59293151 -42087370 + L1PA13 LINE L1 5459 5772 -391 189 107 0 0 chr15 59293151 59293179 -42087342 + (TA)n Simple_repeat Simple_repeat 1 28 0 4549 99 27 13 chr15 59293179 59293553 -42086968 + L1PA13 LINE L1 5772 6162 -1 5194 182 30 51 chr15 59294891 59294997 -42085524 + L1M4 LINE L1 3801 3908 -2238 2167 150 0 0 chr15 59294997 59295303 -42085218 - AluSx SINE Alu -6 306 1 5194 182 30 51 chr15 59295303 59296534 -42083987 + L1M4 LINE L1 3908 5110 -1036 32 0 0 0 chr15 59300340 59300372 -42080149 + AT_rich Low_complexity Low_complexity 1 32 0 180 77 0 0 chr15 59301163 59301189 -42079332 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 1070 134 139 15 chr15 59302270 59302471 -42078050 - 7SLRNA srpRNA srpRNA 0 320 95 379 310 217 5 chr15 59303178 59303381 -42077140 - MIR SINE MIR -6 256 11 195 260 40 0 chr15 59304795 59304845 -42075676 - MIR SINE MIR -62 146 95 2055 139 10 3 chr15 59305732 59306035 -42074486 + AluJb SINE Alu 1 305 -7 268 285 79 17 chr15 59306146 59306273 -42074248 - MER5A DNA MER1_type -32 146 20 225 284 252 0 chr15 59306574 59306701 -42073820 - MIR3 SINE MIR -1 207 49 619 250 157 20 chr15 59307082 59307286 -42073235 - MIR SINE MIR -10 252 21 2435 99 71 0 chr15 59307291 59307643 -42072878 + MER51B LTR ERV1 1 377 0 389 292 50 17 chr15 59309211 59309331 -42071190 - L2 LINE L2 -3 3310 3187 448 317 71 27 chr15 59309337 59309520 -42071001 - MIR3 SINE MIR -9 199 9 181 242 136 15 chr15 59310756 59310822 -42069699 - L3 LINE CR1 -97 1480 1407 195 250 0 0 chr15 59311887 59311931 -42068590 - MIR SINE MIR -58 150 107 196 224 103 17 chr15 59314454 59314512 -42066009 - L3 LINE CR1 -778 799 737 495 161 0 0 chr15 59314536 59314617 -42065904 + MER51A LTR ERV1 1 81 -553 28 0 0 0 chr15 59314742 59314770 -42065751 + AT_rich Low_complexity Low_complexity 1 28 0 1869 178 10 0 chr15 59314777 59315080 -42065441 + AluSx SINE Alu 1 306 -6 248 271 122 19 chr15 59315207 59315314 -42065207 - MER5A DNA MER1_type -48 141 24 186 250 0 0 chr15 59315668 59315708 -42064813 - L3b LINE CR1 -5 1578 1539 598 231 170 19 chr15 59316266 59316466 -42064055 - MIR SINE MIR -18 244 18 266 220 0 0 chr15 59316619 59316669 -42063852 + PABL_B LTR ERV1 1 50 -617 684 231 39 19 chr15 59317115 59317323 -42063198 + PABL_B LTR ERV1 456 667 0 225 187 13 67 chr15 59317339 59317360 -42063161 - L1MC4a LINE L1 -1853 5955 5934 365 0 22 0 chr15 59317360 59317405 -42063116 + (CA)n Simple_repeat Simple_repeat 2 47 0 225 187 13 67 chr15 59317405 59317458 -42063063 - L1MC4a LINE L1 -1874 5934 5885 196 200 109 18 chr15 59318678 59318733 -42061788 - L3 LINE CR1 -781 796 737 3257 148 55 17 chr15 59318757 59319352 -42061169 + MER51A LTR ERV1 1 618 -16 283 252 79 102 chr15 59319440 59319567 -42060954 - L2 LINE L2 -3 3310 3187 383 318 119 0 chr15 59319573 59319724 -42060797 - MIR3 SINE MIR -9 199 31 1741 166 43 122 chr15 59320271 59320928 -42059593 - LTR10E LTR ERV1 0 566 1 854 105 0 0 chr15 59321837 59321942 -42058579 - AluJb SINE Alu -207 105 1 2482 75 0 0 chr15 59322758 59323065 -42057456 + AluY SINE Alu 1 307 -4 1768 134 17 14 chr15 59323153 59323443 -42057078 + AluSx SINE Alu 1 291 -21 2202 125 0 0 chr15 59324567 59324862 -42055659 + AluSx SINE Alu 1 295 -17 456 260 39 39 chr15 59325604 59325758 -42054763 - MIR3 SINE MIR -50 158 5 374 234 64 35 chr15 59325944 59326085 -42054436 - MIR SINE MIR -70 192 48 4121 122 5 44 chr15 59327435 59328068 -42052453 - LTR14B LTR ERVK 0 608 1 214 189 0 0 chr15 59328870 59328907 -42051614 + (TATATG)n Simple_repeat Simple_repeat 4 40 0 932 168 7 7 chr15 59329619 59329774 -42050747 + MER5A DNA MER1_type 2 156 -33 1405 185 66 4 chr15 59330511 59330770 -42049751 + AluJo SINE Alu 1 275 -37 2272 93 3 7 chr15 59330859 59331159 -42049362 + AluSp SINE Alu 1 299 -14 2051 109 49 0 chr15 59331172 59331456 -42049065 + AluSx SINE Alu 1 298 -14 319 229 132 11 chr15 59331657 59331886 -42048635 + L1P5 LINE L1 5283 5555 -599 * 441 250 0 17 chr15 59331865 59331981 -42048540 + L1ME LINE L1 5532 5645 -476 971 234 77 29 chr15 59332787 59333140 -42047381 - L1MC4a LINE L1 -475 5827 5694 634 190 9 17 chr15 59333668 59333784 -42046737 - FLAM_C SINE Alu -18 115 1 331 287 25 33 chr15 59334279 59334401 -42046120 + L2 LINE L2 2927 3047 -225 366 333 63 0 chr15 59334467 59334578 -42045943 - L2 LINE L2 -33 3239 3122 349 266 94 31 chr15 59335630 59335758 -42044763 + L2 LINE L2 3137 3272 0 1039 255 10 0 chr15 59335823 59336031 -42044490 - MER82 DNA MER2_type 0 653 444 316 343 55 28 chr15 59336063 59336244 -42044277 + MIR SINE MIR 2 187 -75 476 232 0 11 chr15 59336279 59336374 -42044147 - MER82 DNA MER2_type -559 94 1 749 176 0 32 chr15 59336968 59336979 -42043542 - FLAM_A SINE Alu -181 121 111 183 80 0 0 chr15 59336979 59337004 -42043517 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 749 176 0 32 chr15 59337004 59337117 -42043404 - FLAM_A SINE Alu -191 111 1 2938 65 8 3 chr15 59339657 59340009 -42040512 - THE1A LTR MaLR -1 354 1 2591 41 0 0 chr15 59340577 59340872 -42039649 + AluY SINE Alu 1 295 -16 1051 85 0 0 chr15 59340970 59341100 -42039421 - AluSq/x SINE Alu -183 130 1 1717 234 108 50 chr15 59341282 59342022 -42038499 - L1MC4a LINE L1 -1691 6100 5313 2219 112 0 3 chr15 59342022 59342326 -42038195 - AluSc SINE Alu -6 303 1 1717 234 108 50 chr15 59342326 59342345 -42038176 - L1MC4a LINE L1 -2478 5313 5297 387 309 134 29 chr15 59342787 59343205 -42037316 - L1MC4a LINE L1 -2982 3147 2686 1003 268 103 40 chr15 59343245 59344022 -42036499 - L1M4 LINE L1 -3192 2954 2129 539 281 63 110 chr15 59344076 59344291 -42036230 - L1MC4a LINE L1 -4969 1150 926 1453 149 3 138 chr15 59344291 59344640 -42035881 - AluJo SINE Alu -10 302 1 539 281 63 110 chr15 59344640 59345043 -42035478 - L1MC4a LINE L1 -5193 926 561 1778 184 0 3 chr15 59347108 59347413 -42033108 + AluJb SINE Alu 6 309 -3 230 161 0 36 chr15 59348212 59348268 -42032253 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 1128 105 0 0 chr15 59348457 59348610 -42031911 + AluSp/q SINE Alu 159 311 -2 607 301 67 53 chr15 59348791 59349150 -42031371 - L3 LINE CR1 -177 1400 1037 7763 95 18 3 chr15 59349692 59350812 -42029709 - L1P LINE L1 -2936 3210 2074 * 11090 70 22 0 chr15 59350810 59352280 -42028241 + L1P LINE L1 3865 5367 -779 1193 71 0 0 chr15 59352282 59352423 -42028098 - AluSg SINE Alu -169 141 1 1668 189 126 36 chr15 59353051 59353495 -42027026 - LTR2B LTR ERV1 0 490 7 2020 119 65 3 chr15 59353770 59354064 -42026457 - AluSx SINE Alu 0 312 1 2584 68 126 8 chr15 59354323 59354719 -42025802 + LTR7 LTR ERV1 1 443 -7 1607 185 7 14 chr15 59355670 59355967 -42024554 - AluJo SINE Alu -17 295 1 540 118 0 0 chr15 59356091 59356180 -42024341 - AluSg/x SINE Alu 0 302 214 813 141 21 120 chr15 59356434 59356505 -42024016 + MER5A DNA MER1_type 16 92 -97 1641 134 130 0 chr15 59356505 59356781 -42023740 + AluSx SINE Alu 1 312 0 813 141 21 120 chr15 59356781 59356901 -42023620 + MER5A DNA MER1_type 92 188 -1 644 240 91 66 chr15 59357727 59357969 -42022552 + MIR SINE MIR 5 252 -10 306 295 82 0 chr15 59358053 59358175 -42022346 - MER112 DNA MER1_type -121 139 8 1059 58 7 0 chr15 59358196 59358333 -42022188 + L1PA13 LINE L1 6026 6163 0 1067 146 23 6 chr15 59358338 59358509 -42022012 + AluJo SINE Alu 118 291 -21 402 217 94 14 chr15 59359507 59359645 -42020876 - MER53 DNA DNA -40 149 1 256 188 42 0 chr15 59359653 59359701 -42020820 - MIR SINE MIR -156 106 57 289 213 13 40 chr15 59360507 59360582 -42019939 - MIR SINE MIR -85 177 105 21 0 0 0 chr15 59360620 59360641 -42019880 + AT_rich Low_complexity Low_complexity 1 21 0 2268 131 16 22 chr15 59361799 59362166 -42018355 - L1MB2 LINE L1 -228 5943 5579 1804 192 43 3 chr15 59362161 59362510 -42018011 - L1MB8 LINE L1 -346 5832 5470 * 352 234 54 71 chr15 59362612 59362721 -42017800 + L1MC4 LINE L1 7492 7598 -444 2211 114 7 0 chr15 59362721 59363028 -42017493 + AluSg SINE Alu 1 309 -1 352 234 54 71 chr15 59363028 59363102 -42017419 + L1MC4 LINE L1 7598 7672 -370 288 286 31 0 chr15 59363140 59363245 -42017276 + L1MC4 LINE L1 7807 8005 -37 2274 92 0 0 chr15 59363747 59364031 -42016490 + AluSx SINE Alu 1 284 -28 297 75 0 0 chr15 59364098 59364138 -42016383 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 1126 281 131 60 chr15 59365444 59366245 -42014276 - L3 LINE CR1 -57 1520 663 291 248 162 51 chr15 59366198 59366315 -42014206 - L2 LINE L2 -1 3271 3142 * 188 222 22 0 chr15 59366442 59366487 -42014034 - L3 LINE CR1 -1102 475 430 2227 65 65 7 chr15 59366518 59366810 -42013711 + AluY SINE Alu 2 310 -1 815 248 85 104 chr15 59366842 59367729 -42012792 + L1MD3 LINE L1 6180 6968 -840 14561 141 24 12 chr15 59367735 59371299 -42009222 + L1MA1 LINE L1 2697 6302 0 541 273 92 20 chr15 59371318 59371567 -42008954 + L1MC4 LINE L1 7120 7386 -656 3135 221 37 21 chr15 59371567 59372225 -42008296 + L1ME1 LINE L1 5429 6075 -91 2021 105 24 24 chr15 59372225 59372358 -42008163 + AluSq SINE Alu 6 138 -175 1726 118 76 8 chr15 59372358 59372621 -42007900 + AluSx SINE Alu 1 281 -31 402 167 0 0 chr15 59372561 59372621 -42007900 + AluS SINE Alu 220 310 0 240 0 32 0 chr15 59372621 59372652 -42007869 + (CAAA)n Simple_repeat Simple_repeat 1 72 0 1059 107 44 0 chr15 59372652 59372811 -42007710 + AluSq SINE Alu 134 299 -14 3135 221 37 21 chr15 59372811 59372873 -42007648 + L1ME1 LINE L1 6075 6161 -5 1438 244 80 65 chr15 59372862 59373539 -42006982 + L1MC4 LINE L1 7355 8041 -1 * 593 290 98 35 chr15 59373833 59374351 -42006170 + L1M4 LINE L1 2475 3025 -3121 304 221 120 25 chr15 59374764 59374922 -42005599 + L1ME3A LINE L1 5779 5951 -219 489 61 0 192 chr15 59375235 59375334 -42005187 - MADE1 DNA Mariner 0 80 1 2106 102 0 14 chr15 59375393 59375688 -42004833 + AluSg SINE Alu 3 293 -17 356 184 18 94 chr15 59376039 59376162 -42004359 + L1MC4 LINE L1 6526 6703 -1139 2251 75 10 0 chr15 59376787 59376911 -42003610 + AluY SINE Alu 1 122 -189 297 0 0 0 chr15 59376911 59376944 -42003577 + (CA)n Simple_repeat Simple_repeat 2 34 0 2251 75 10 0 chr15 59376944 59377113 -42003408 + AluY SINE Alu 122 297 -14 754 250 103 38 chr15 59377182 59377474 -42003047 - LTR16A1 LTR ERVL 0 457 147 189 191 64 21 chr15 59378483 59378530 -42001991 - L3 LINE CR1 -258 1319 1271 329 70 333 0 chr15 59378743 59378800 -42001721 + MADE1 DNA Mariner 5 80 0 2232 76 10 13 chr15 59378951 59379084 -42001437 + AluSg SINE Alu 1 133 -177 2166 103 0 3 chr15 59379084 59379386 -42001135 + AluSg SINE Alu 1 301 -9 2232 76 10 13 chr15 59379386 59379553 -42000968 + AluSg SINE Alu 133 300 -10 1974 122 17 0 chr15 59379566 59379853 -42000668 + AluSx SINE Alu 3 294 -18 457 242 37 19 chr15 59380238 59380399 -42000122 + MER103 DNA DNA 1 164 -2 1427 152 0 109 chr15 59380486 59380816 -41999705 - AluJb SINE Alu -18 294 1 441 265 99 6 chr15 59381136 59381298 -41999223 - LTR33A LTR ERVL -39 484 308 226 305 35 57 chr15 59381468 59381609 -41998912 - LTR33A LTR ERVL -367 156 19 2072 117 3 0 chr15 59381692 59381999 -41998522 - AluSx SINE Alu -4 308 1 866 200 115 11 chr15 59382666 59382926 -41997595 - MER5C DNA MER1_type 0 324 38 246 238 25 12 chr15 59382964 59383044 -41997477 + MER103 DNA DNA 38 118 -48 235 214 29 0 chr15 59383285 59383355 -41997166 + GA-rich Low_complexity Low_complexity 2 73 0 340 264 138 13 chr15 59383972 59384160 -41996361 + MIR3 SINE MIR 33 237 -25 525 200 19 0 chr15 59384573 59384678 -41995843 + MER5A DNA MER1_type 6 112 -77 268 371 29 29 chr15 59385157 59385297 -41995224 + MIR SINE MIR 31 170 -92 1731 164 7 0 chr15 59385994 59386287 -41994234 - AluSx SINE Alu -17 295 1 2125 88 14 0 chr15 59386492 59386802 -41993719 - AluSp SINE Alu 0 314 1 204 296 0 0 chr15 59386938 59386982 -41993539 - MER91B DNA MER1_type -133 57 14 2291 92 0 0 chr15 59387044 59387347 -41993174 - AluSx SINE Alu -9 303 1 2054 95 3 3 chr15 59388506 59388790 -41991731 + AluSc SINE Alu 14 297 -12 2259 110 0 0 chr15 59388907 59389217 -41991304 + AluSg SINE Alu 1 310 0 9340 25 0 221 chr15 59389440 59391217 -41989304 - SVA Other Other -1 1385 1 215 0 0 62 chr15 59391219 59391251 -41989270 + (AGGGGG)n Simple_repeat Simple_repeat 6 35 0 12646 126 15 4 chr15 59391651 59393538 -41986983 - L1M1 LINE L1 -4502 3063 1155 372 257 86 18 chr15 59393538 59393724 -41986797 + LTR33A LTR ERVL 301 469 -54 769 189 0 0 chr15 59393730 59393862 -41986659 + AluJo/FLAM SINE Alu 2 133 -169 1357 106 0 0 chr15 59393865 59394044 -41986477 + AluSg SINE Alu 1 179 -131 226 133 0 0 chr15 59394054 59394084 -41986437 + Alu SINE Alu 146 175 -127 1110 88 0 0 chr15 59394107 59394255 -41986266 + AluSc SINE Alu 144 291 -18 938 103 0 139 chr15 59394255 59394449 -41986072 + AluSg/x SINE Alu 134 300 -12 247 343 51 26 chr15 59394484 59394601 -41985920 - MIR SINE MIR -93 115 5 261 0 0 0 chr15 59395290 59395319 -41985202 + (CA)n Simple_repeat Simple_repeat 1 29 0 1576 167 30 4 chr15 59395522 59395792 -41984729 + AluJo SINE Alu 15 291 -21 260 292 50 17 chr15 59395816 59395936 -41984585 - L1ME4a LINE L1 -57 6064 5941 1705 183 85 25 chr15 59396411 59396777 -41983744 - MSTD LTR MaLR 0 396 9 392 254 27 27 chr15 59396761 59396871 -41983650 - LTR33 LTR ERVL -28 493 384 * 2068 87 42 3 chr15 59397145 59397433 -41983088 - AluSx SINE Alu -13 299 1 323 223 87 48 chr15 59398586 59398689 -41981832 + L1MC4 LINE L1 6595 6701 -1341 1520 225 63 33 chr15 59398690 59398866 -41981655 - L1MC4 LINE L1 -124 7918 7749 1998 109 3 0 chr15 59398866 59399150 -41981371 + AluSg SINE Alu 1 285 -25 560 62 12 0 chr15 59399151 59399232 -41981289 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 1520 225 63 33 chr15 59399232 59399511 -41981010 - L1MC4 LINE L1 -292 7750 7447 2426 67 0 0 chr15 59400184 59400484 -41980037 + AluY SINE Alu 1 300 -11 1883 170 3 0 chr15 59400492 59400803 -41979718 + AluJo SINE Alu 1 312 0 244 232 81 50 chr15 59401183 59401282 -41979239 - LTR33A LTR ERVL -362 161 60 183 156 0 0 chr15 59401881 59401913 -41978608 + A-rich Low_complexity Low_complexity 2 33 0 285 209 0 0 chr15 59402903 59402970 -41977551 + (CA)n Simple_repeat Simple_repeat 1 67 0 203 218 88 82 chr15 59403102 59403249 -41977272 - L2 LINE L2 -452 2862 2715 207 0 0 0 chr15 59403357 59403380 -41977141 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2261 92 0 3 chr15 59403385 59403691 -41976830 + AluSg SINE Alu 3 307 -3 1151 228 23 99 chr15 59403970 59404404 -41976117 - MLT1J LTR MaLR -2 509 109 1472 171 113 16 chr15 59404676 59404934 -41975587 - MER58B DNA MER1_type -2081 339 45 2066 123 3 28 chr15 59404934 59405251 -41975270 + AluSx SINE Alu 3 311 -1 1472 171 113 16 chr15 59405251 59405301 -41975220 - MER58B DNA MER1_type -2375 45 1 525 211 79 0 chr15 59405397 59405511 -41975010 - MIR SINE MIR -77 185 63 745 264 129 0 chr15 59405661 59405862 -41974659 + MIR SINE MIR 8 234 -28 359 229 19 48 chr15 59406336 59406441 -41974080 - MER5A DNA MER1_type -15 174 73 251 211 42 28 chr15 59406441 59406457 -41974064 - Charlie1 DNA MER1_type -396 2365 2351 1937 172 47 5 chr15 59406457 59406840 -41973681 - L1MD2 LINE L1 -1 6358 5960 251 211 42 28 chr15 59406840 59406894 -41973627 - Charlie1 DNA MER1_type -410 2351 2294 1515 180 7 30 chr15 59406919 59407214 -41973307 - AluJo SINE Alu -24 288 1 1789 189 43 18 chr15 59407238 59407634 -41972887 - L1MA9 LINE L1 -247 6065 5660 297 238 0 0 chr15 59407634 59407697 -41972824 + MER5A DNA MER1_type 124 186 -3 2311 75 0 16 chr15 59407703 59408011 -41972510 + AluY SINE Alu 1 303 -8 2203 95 0 0 chr15 59408975 59409269 -41971252 + AluSx SINE Alu 1 294 -18 2123 117 27 0 chr15 59409887 59410187 -41970334 + AluSx SINE Alu 1 308 -4 595 258 121 17 chr15 59410352 59410666 -41969855 + L1MC/D LINE L1 5372 5725 -468 569 314 37 5 chr15 59410668 59410755 -41969766 + MIR SINE MIR 58 141 -121 288 53 0 0 chr15 59410755 59410793 -41969728 + (CA)n Simple_repeat Simple_repeat 1 38 0 569 314 37 5 chr15 59410793 59410896 -41969625 + MIR SINE MIR 141 254 -8 2049 95 51 0 chr15 59411975 59412269 -41968252 - AluSq SINE Alu -4 309 1 238 319 106 9 chr15 59412365 59412478 -41968043 + MIR SINE MIR 17 140 -68 252 259 127 62 chr15 59413158 59413302 -41967219 + MIR3 SINE MIR 15 183 -41 323 167 71 36 chr15 59413509 59413593 -41966928 - MIR3 SINE MIR -10 198 112 216 0 0 0 chr15 59413676 59413700 -41966821 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1666 145 29 7 chr15 59413703 59413979 -41966542 - AluSx SINE Alu -30 282 1 234 270 14 14 chr15 59414396 59414470 -41966051 + (CATATA)n Simple_repeat Simple_repeat 3 76 0 415 200 64 32 chr15 59414755 59414880 -41965641 - MIR SINE MIR -7 255 127 2228 115 0 0 chr15 59415105 59415410 -41965111 + AluSq SINE Alu 1 305 -8 370 294 115 20 chr15 59415837 59416089 -41964432 + L1MC4a LINE L1 5667 5942 -1866 370 295 131 68 chr15 59416316 59416682 -41963839 + L2 LINE L2 2921 3309 -4 42 20 0 0 chr15 59416741 59416790 -41963731 + AT_rich Low_complexity Low_complexity 1 49 0 1736 152 51 0 chr15 59416820 59417116 -41963405 - AluSx SINE Alu -1 311 1 853 201 0 12 chr15 59417122 59417286 -41963235 - AluJo SINE Alu -4 298 137 524 335 99 11 chr15 59417289 59417561 -41962960 - L3 LINE CR1 -110 1467 1172 271 280 194 40 chr15 59417663 59417838 -41962683 - L3 LINE CR1 -426 1151 950 1017 164 11 0 chr15 59418916 59419093 -41961428 - AluJo SINE Alu -14 298 120 820 165 8 0 chr15 59420369 59420502 -41960019 - AluJo SINE Alu -175 137 4 2223 65 3 36 chr15 59421197 59421503 -41959018 - AluSc SINE Alu -7 302 7 1388 160 0 4 chr15 59421662 59421899 -41958622 - AluJo SINE Alu -12 300 65 957 180 0 12 chr15 59422022 59422183 -41958338 + FRAM SINE Alu 1 159 -7 1942 136 10 7 chr15 59422587 59422897 -41957624 + AluSx SINE Alu 1 311 -1 935 247 121 50 chr15 59423056 59423176 -41957345 - LTR33A LTR ERVL 0 523 413 1936 154 80 3 chr15 59423176 59423514 -41957007 + THE1B LTR MaLR 1 364 0 935 247 121 50 chr15 59423514 59423757 -41956764 - LTR33A LTR ERVL -110 413 134 991 242 0 45 chr15 59423777 59424041 -41956480 + L1PBa LINE L1 1102 1353 -5510 329 311 46 20 chr15 59424045 59424196 -41956325 - LTR33 LTR ERVL -365 156 2 310 262 48 12 chr15 59424272 59424356 -41956165 - MIR SINE MIR -104 158 72 1675 194 89 48 chr15 59425015 59425168 -41955353 + L1MB8 LINE L1 5716 5861 -317 2297 91 0 0 chr15 59425168 59425454 -41955067 + AluSc SINE Alu 19 304 -5 1675 194 89 48 chr15 59425454 59425737 -41954784 + L1MB8 LINE L1 5861 6170 -8 1838 166 0 7 chr15 59425738 59426034 -41954487 - AluJb SINE Alu -18 294 1 31 26 0 0 chr15 59426034 59426072 -41954449 + AT_rich Low_complexity Low_complexity 1 38 0 433 363 6 6 chr15 59426421 59426592 -41953929 + L2 LINE L2 3099 3269 -3 1674 166 0 72 chr15 59426592 59426936 -41953585 - AluJb SINE Alu 0 312 1 186 253 213 13 chr15 59427103 59427178 -41953343 - MIR SINE MIR -89 119 30 1230 137 73 6 chr15 59427216 59427473 -41953048 - Tigger5 DNA MER2_type -1 2322 77 225 235 0 20 chr15 59427506 59427557 -41952964 + Tigger5 DNA MER2_type 1 50 -2273 * 320 269 0 0 chr15 59427552 59427619 -41952902 - Tigger5 DNA MER2_type -2256 67 1 470 151 0 0 chr15 59427829 59427902 -41952619 - AluJ/FLAM SINE Alu -224 88 16 * 552 165 0 0 chr15 59427899 59427996 -41952525 + AluSg/x SINE Alu 210 306 -6 1837 126 19 0 chr15 59428477 59428590 -41951931 + AluSx SINE Alu 16 125 -190 245 50 0 25 chr15 59428590 59428630 -41951891 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 1837 126 19 0 chr15 59428630 59428811 -41951710 + AluSx SINE Alu 125 315 0 3174 138 70 6 chr15 59429058 59429572 -41950949 - MER21A LTR ERV1 -9 922 376 1107 138 98 5 chr15 59429574 59429773 -41950748 - MER21A LTR ERV1 -663 268 51 3190 62 5 0 chr15 59429773 59430158 -41950363 + MLT2A1 LTR ERVL 2 388 -56 354 138 35 0 chr15 59430164 59430222 -41950299 - MER21A LTR ERV1 -871 60 1 1775 223 52 33 chr15 59430806 59431067 -41949454 + MLT1F LTR MaLR 113 387 -155 2292 81 32 0 chr15 59431067 59431351 -41949170 + AluSg SINE Alu 2 294 -16 1775 223 52 33 chr15 59431351 59431511 -41949010 + MLT1F LTR MaLR 387 542 0 1946 130 0 57 chr15 59431871 59432186 -41948335 + AluSx SINE Alu 1 297 -15 611 172 33 16 chr15 59432540 59432662 -41947859 - AluJb SINE Alu -187 125 2 48 32 0 0 chr15 59432723 59432785 -41947736 + AT_rich Low_complexity Low_complexity 1 62 0 25 0 0 0 chr15 59433511 59433536 -41946985 + AT_rich Low_complexity Low_complexity 1 25 0 1213 122 31 44 chr15 59433625 59433786 -41946735 - L1MA7 LINE L1 -10 6281 6122 2105 139 3 0 chr15 59433786 59434081 -41946440 + AluJb SINE Alu 1 296 -16 1213 122 31 44 chr15 59434081 59434148 -41946373 - L1MA7 LINE L1 -169 6122 6056 21 0 0 0 chr15 59434189 59434210 -41946311 + AT_rich Low_complexity Low_complexity 1 21 0 2354 87 3 0 chr15 59434219 59434533 -41945988 + AluSq SINE Alu 1 315 0 1916 141 0 37 chr15 59434564 59434862 -41945659 + AluSx SINE Alu 1 287 -25 941 193 6 0 chr15 59434881 59435052 -41945469 + FAM SINE Alu 1 172 -3 2436 72 3 10 chr15 59435052 59435357 -41945164 + AluY SINE Alu 1 303 -8 246 298 24 12 chr15 59435454 59435538 -41944983 + L2 LINE L2 3212 3296 -17 594 265 118 12 chr15 59435539 59435764 -41944757 - L1M4 LINE L1 -333 5788 5562 186 43 0 0 chr15 59435808 59435831 -41944690 + (A)n Simple_repeat Simple_repeat 1 23 0 704 126 0 68 chr15 59436468 59436659 -41943862 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 232 186 14 14 chr15 59436661 59436731 -41943790 + GA-rich Low_complexity Low_complexity 2 71 0 239 235 143 25 chr15 59436758 59436877 -41943644 + MIR3 SINE MIR 68 200 -8 1168 147 66 5 chr15 59437474 59437672 -41942849 + AluJb SINE Alu 87 296 -16 345 246 40 149 chr15 59438330 59438485 -41942036 - LTR16A LTR ERVL -15 435 311 2376 101 0 0 chr15 59438485 59438792 -41941729 + AluSg SINE Alu 2 308 -2 345 246 40 149 chr15 59438792 59438864 -41941657 - LTR16A LTR ERVL -139 311 233 2129 96 11 4 chr15 59439261 59439564 -41940957 - AluSx SINE Alu 0 305 1 362 265 68 17 chr15 59439565 59439682 -41940839 - MIR SINE MIR -56 152 30 2324 112 3 0 chr15 59440950 59441254 -41939267 + AluSx SINE Alu 5 309 -3 885 240 112 53 chr15 59441323 59442074 -41938447 + L1MC5 LINE L1 7258 7929 -32 2032 132 0 3 chr15 59442082 59442371 -41938150 + AluSx SINE Alu 1 288 -24 22 35 0 0 chr15 59443513 59443542 -41936979 + AT_rich Low_complexity Low_complexity 1 29 0 2026 153 3 10 chr15 59444184 59444498 -41936023 - AluSx SINE Alu 0 312 1 189 0 0 0 chr15 59444510 59444531 -41935990 + (A)n Simple_repeat Simple_repeat 1 21 0 692 207 0 0 chr15 59444531 59444647 -41935874 - FLAM_C SINE Alu -26 117 2 202 204 167 111 chr15 59446256 59446364 -41934157 - L2 LINE L2 -5 3308 3195 1611 162 18 11 chr15 59447220 59447504 -41933017 - AluJo SINE Alu -8 304 19 31 58 0 0 chr15 59448251 59448303 -41932218 + GC_rich Low_complexity Low_complexity 1 52 0 213 200 0 0 chr15 59448385 59448430 -41932091 + (CGG)n Simple_repeat Simple_repeat 1 45 0 1563 80 0 0 chr15 59451706 59451893 -41928628 - AluSx SINE Alu -125 187 1 605 307 117 39 chr15 59453096 59453558 -41926963 + L1MC/D LINE L1 5307 5804 -2004 21 36 0 0 chr15 59453575 59453603 -41926918 + AT_rich Low_complexity Low_complexity 1 28 0 2065 126 20 0 chr15 59453649 59453951 -41926570 - AluSx SINE Alu -4 308 1 1906 145 48 0 chr15 59454532 59454822 -41925699 - AluSx SINE Alu -8 304 1 1703 156 6 44 chr15 59455060 59455381 -41925140 - AluJo SINE Alu -3 309 1 536 240 87 0 chr15 59455501 59455651 -41924870 - MER5A DNA MER1_type 0 189 27 2390 95 3 45 chr15 59455874 59456231 -41924290 + THE1C LTR MaLR 1 342 -33 9006 98 86 68 chr15 59456240 59457793 -41922728 + THE1C-int LTR MaLR 1 1580 0 2317 93 65 8 chr15 59457793 59458148 -41922373 + THE1C LTR MaLR 1 375 0 1790 154 0 0 chr15 59458628 59458895 -41921626 - AluSx SINE Alu -9 303 37 377 107 0 0 chr15 59459104 59459160 -41921361 - Alu SINE Alu -1 301 246 185 195 24 0 chr15 59459332 59459373 -41921148 + MER5B DNA MER1_type 1 42 -136 * 455 163 61 20 chr15 59459366 59459464 -41921057 - MER5B DNA MER1_type -75 103 2 * 747 245 69 0 chr15 59459464 59459676 -41920845 + L2 LINE L2 584 810 -2504 819 169 99 29 chr15 59459692 59459864 -41920657 + MER20 DNA MER1_type 36 219 0 477 270 68 0 chr15 59459941 59460089 -41920432 + MER112 DNA MER1_type 92 249 -11 1067 256 284 28 chr15 59460097 59460775 -41919746 + L2 LINE L2 805 1308 -2006 2006 112 77 0 chr15 59460775 59461062 -41919459 + AluSg SINE Alu 1 309 -1 1067 256 284 28 chr15 59461062 59461220 -41919301 + L2 LINE L2 1308 1856 -1458 728 139 98 0 chr15 59461222 59461344 -41919177 - AluJb SINE Alu -174 138 5 281 281 105 33 chr15 59461347 59461557 -41918964 + L2 LINE L2 1873 2097 -1217 384 244 139 28 chr15 59461667 59461847 -41918674 + L2 LINE L2 3112 3311 -2 257 308 26 51 chr15 59462998 59463115 -41917406 + MER5B DNA MER1_type 3 116 -62 933 164 64 20 chr15 59463923 59464129 -41916392 - MLT1B LTR MaLR 0 467 196 2282 190 22 28 chr15 59464129 59464592 -41915929 - MER66B LTR ERV1 0 486 27 953 189 15 20 chr15 59464613 59464809 -41915712 - MLT1B LTR MaLR -195 195 1 260 300 92 8 chr15 59465161 59465281 -41915240 - MER5A DNA MER1_type 0 189 60 227 329 93 21 chr15 59465184 59465324 -41915197 + MER5A DNA MER1_type 35 184 -5 * 1896 145 7 24 chr15 59465450 59465769 -41914752 + AluSq SINE Alu 1 313 0 362 242 220 8 chr15 59466125 59466257 -41914264 - MER5A DNA MER1_type -21 168 9 231 260 0 0 chr15 59466472 59466522 -41913999 + MER5A DNA MER1_type 4 53 -136 1375 175 39 45 chr15 59466606 59466628 -41913893 - AluJb SINE Alu 0 312 291 836 141 0 15 chr15 59466628 59466763 -41913758 - AluJo/FLAM SINE Alu -169 133 1 186 43 0 0 chr15 59466769 59466792 -41913729 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1375 175 39 45 chr15 59466792 59467071 -41913450 - AluJb SINE Alu -26 286 6 2544 76 0 0 chr15 59467765 59468069 -41912452 + AluSg SINE Alu 1 304 -6 380 168 18 0 chr15 59468183 59468270 -41912251 + L1ME1 LINE L1 6088 6184 0 246 266 62 44 chr15 59468575 59468688 -41911833 - MIR SINE MIR -74 134 20 198 301 0 27 chr15 59468863 59468936 -41911585 - L2 LINE L2 -52 3220 3150 396 278 33 13 chr15 59469043 59469194 -41911327 + MIR SINE MIR 83 236 -26 495 0 0 0 chr15 59469232 59469287 -41911234 + (TG)n Simple_repeat Simple_repeat 2 56 0 428 237 31 0 chr15 59469905 59470002 -41910519 + MER5A DNA MER1_type 10 109 -80 200 232 18 36 chr15 59470143 59470199 -41910322 - MIR SINE MIR -187 75 21 250 321 50 0 chr15 59471014 59471135 -41909386 - MIR SINE MIR -78 130 2 5757 65 4 19 chr15 59472165 59472243 -41908278 + L1PA6 LINE L1 5414 5492 -662 2205 78 4 7 chr15 59472243 59472552 -41907969 + AluY SINE Alu 1 308 0 5757 65 4 19 chr15 59472552 59473224 -41907297 + L1PA6 LINE L1 5492 6154 0 216 86 0 0 chr15 59473743 59473778 -41906743 + (T)n Simple_repeat Simple_repeat 1 35 0 1294 138 0 27 chr15 59474976 59475200 -41905321 - MER20 DNA MER1_type -1 218 1 2157 102 28 0 chr15 59476048 59476331 -41904190 + AluSx SINE Alu 1 291 -21 56 0 0 0 chr15 59476739 59476795 -41903726 + AT_rich Low_complexity Low_complexity 1 56 0 2567 72 0 0 chr15 59477100 59477407 -41903114 + AluY SINE Alu 1 307 -4 189 132 0 0 chr15 59478554 59478592 -41901929 + (TG)n Simple_repeat Simple_repeat 1 38 0 1772 144 27 30 chr15 59479697 59479996 -41900525 + AluJb SINE Alu 1 298 -14 194 299 87 39 chr15 59480995 59481122 -41899399 + L2 LINE L2 3125 3257 -15 1987 122 7 4 chr15 59482448 59482727 -41897794 + AluSq SINE Alu 1 280 -33 186 43 0 0 chr15 59482731 59482754 -41897767 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1677 159 35 28 chr15 59482997 59483286 -41897235 + AluJo SINE Alu 1 291 -21 220 333 67 27 chr15 59483937 59484087 -41896434 - MIR3 SINE MIR -5 203 48 298 277 50 8 chr15 59484573 59484692 -41895829 + MIR3 SINE MIR 54 177 -31 324 289 119 26 chr15 59485336 59485530 -41894991 + L2 LINE L2 2847 3058 -214 301 226 0 0 chr15 59485653 59485715 -41894806 - L2 LINE L2 0 3313 3252 424 144 93 0 chr15 59485849 59485946 -41894575 - MER5A DNA MER1_type -77 112 7 184 247 136 12 chr15 59487799 59487880 -41892641 + MIR SINE MIR 33 123 -85 2193 107 3 31 chr15 59488103 59488422 -41892099 - AluSx SINE Alu -2 310 1 278 219 219 0 chr15 59488433 59488529 -41891992 + L2 LINE L2 3151 3267 -5 2136 108 0 35 chr15 59488847 59489161 -41891360 - AluSx SINE Alu -9 303 1 1458 174 107 0 chr15 59490027 59490297 -41890224 - AluJo SINE Alu -13 299 1 24 53 0 0 chr15 59490307 59490345 -41890176 + AT_rich Low_complexity Low_complexity 1 38 0 2349 91 16 0 chr15 59490422 59490729 -41889792 - AluSx SINE Alu 0 312 1 2354 88 7 3 chr15 59490957 59491262 -41889259 + AluSp SINE Alu 1 306 -7 2417 67 3 7 chr15 59493061 59493361 -41887160 - AluSg SINE Alu -11 299 1 1813 186 98 34 chr15 59493489 59493930 -41886591 - MLT1D LTR MaLR -4 501 33 1654 216 58 113 chr15 59494617 59495336 -41885185 - L1MC4 LINE L1 -5 8037 7358 2128 133 39 30 chr15 59496215 59496576 -41883945 + THE1B LTR MaLR 1 364 0 734 254 10 10 chr15 59497301 59497502 -41883019 + MIR SINE MIR 61 261 -1 2176 122 0 3 chr15 59497533 59497836 -41882685 + AluSx SINE Alu 1 302 -10 332 300 139 17 chr15 59497856 59498036 -41882485 - MIR SINE MIR -41 221 20 2177 106 3 0 chr15 59498102 59498386 -41882135 + AluSg SINE Alu 9 293 -17 542 258 93 0 chr15 59498393 59498575 -41881946 - MIR SINE MIR -5 257 59 312 263 25 0 chr15 59500287 59500367 -41880154 + MIR3 SINE MIR 91 172 -36 756 204 36 12 chr15 59501016 59501183 -41879338 + L1ME4a LINE L1 5710 5880 -290 204 341 0 12 chr15 59501316 59501401 -41879120 - MIR3 SINE MIR -15 193 110 295 253 116 34 chr15 59502707 59502853 -41877668 - MIR SINE MIR -12 250 93 261 286 144 7 chr15 59505983 59506122 -41874399 - MIR SINE MIR -65 143 43 714 266 115 13 chr15 59507268 59507494 -41873027 + MIR SINE MIR 3 251 -11 2340 68 0 4 chr15 59507916 59508217 -41872304 + AluSg SINE Alu 1 300 0 21 0 0 0 chr15 59509513 59509534 -41870987 + AT_rich Low_complexity Low_complexity 1 21 0 363 306 0 8 chr15 59510331 59510455 -41870066 + L2 LINE L2 3191 3313 0 2355 70 0 7 chr15 59511174 59511483 -41869038 + AluSg SINE Alu 1 307 0 249 33 0 0 chr15 59511554 59511584 -41868937 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 261 0 0 0 chr15 59511583 59511612 -41868909 + (CA)n Simple_repeat Simple_repeat 1 29 0 2433 189 21 25 chr15 59511724 59512252 -41868269 - L1M4 LINE L1 -1124 5022 4497 229 191 83 0 chr15 59513187 59513271 -41867250 + L1ME4a LINE L1 6029 6119 -2 2119 130 0 7 chr15 59516068 59516375 -41864146 - AluSx SINE Alu -7 305 1 228 86 0 0 chr15 59516469 59516504 -41864017 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2224 102 3 10 chr15 59516527 59516830 -41863691 + AluSp SINE Alu 1 301 -12 1816 146 28 3 chr15 59516964 59517251 -41863270 - AluJb SINE Alu -5 307 14 563 88 0 0 chr15 59518247 59518327 -41862194 - AluJb SINE Alu 0 312 233 881 138 29 14 chr15 59518327 59518465 -41862056 - AluJb SINE Alu -172 140 1 280 322 0 23 chr15 59519223 59519310 -41861211 - L2 LINE L2 0 3313 3229 251 319 64 0 chr15 59519846 59519940 -41860581 - MER5A DNA MER1_type -83 106 7 203 293 38 47 chr15 59520015 59520121 -41860400 + MER5A DNA MER1_type 83 187 -2 188 33 0 33 chr15 59520453 59520483 -41860038 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 2251 110 0 0 chr15 59522520 59522812 -41857709 + AluSx SINE Alu 1 292 -20 293 298 46 15 chr15 59523035 59523166 -41857355 - MIR SINE MIR -80 182 48 2080 94 50 3 chr15 59523857 59524154 -41856367 - AluY SINE Alu 0 311 1 900 48 0 0 chr15 59524158 59524261 -41856260 - AluYb8 SINE Alu -215 103 1 24 0 0 0 chr15 59524312 59524336 -41856185 + AT_rich Low_complexity Low_complexity 1 24 0 2479 134 133 61 chr15 59524670 59525034 -41855487 + MER4A LTR ERV1 1 337 -263 405 0 0 0 chr15 59525034 59525079 -41855442 + (TG)n Simple_repeat Simple_repeat 2 46 0 2479 134 133 61 chr15 59525079 59525092 -41855429 + MER4A LTR ERV1 337 348 -252 2314 100 0 17 chr15 59525092 59525391 -41855130 - AluSx SINE Alu -18 294 1 2479 134 133 61 chr15 59525391 59525570 -41854951 + MER4A LTR ERV1 348 598 -2 1766 240 119 10 chr15 59526368 59526863 -41853658 - MLT1F1 LTR MaLR -16 551 3 2282 107 0 0 chr15 59527250 59527548 -41852973 - AluSg SINE Alu -12 298 1 1914 146 6 19 chr15 59528320 59528500 -41852021 - AluJo SINE Alu 0 312 131 207 0 0 0 chr15 59528500 59528523 -41851998 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1539 86 131 5 chr15 59528523 59528745 -41851776 - AluY SINE Alu -27 284 35 1914 146 6 19 chr15 59528745 59528878 -41851643 - AluJo SINE Alu -179 133 2 962 253 36 74 chr15 59529722 59530114 -41850407 + L1MC4 LINE L1 7350 7726 -316 232 294 96 28 chr15 59530231 59530449 -41850072 + L1MC4 LINE L1 7804 8036 -6 250 219 117 63 chr15 59530694 59530899 -41849622 - L1MC/D LINE L1 -2320 5488 5273 2823 168 94 27 chr15 59530994 59531620 -41848901 + L1MA7 LINE L1 5620 6287 -4 891 227 0 0 chr15 59531975 59532147 -41848374 - AluJ SINE Alu 0 312 141 894 154 0 0 chr15 59532203 59532333 -41848188 - AluJ SINE Alu -181 131 2 2361 108 0 0 chr15 59533080 59533386 -41847135 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr15 59533613 59533635 -41846886 + AT_rich Low_complexity Low_complexity 1 22 0 307 234 26 0 chr15 59534156 59534229 -41846292 - MER5A DNA MER1_type -81 106 20 2320 184 22 31 chr15 59534243 59534975 -41845546 - MER21B LTR ERV1 -73 790 6 242 232 49 12 chr15 59535016 59535098 -41845423 + MIR SINE MIR 37 121 -87 191 250 0 0 chr15 59535108 59535152 -41845369 + L2 LINE L2 3199 3242 -71 205 250 83 56 chr15 59535358 59535466 -41845055 + MER5B DNA MER1_type 37 147 -31 608 152 0 0 chr15 59535478 59535570 -41844951 + FLAM_A SINE Alu 23 114 -28 216 0 0 0 chr15 59535576 59535600 -41844921 + (CA)n Simple_repeat Simple_repeat 2 25 0 197 273 0 0 chr15 59535606 59535650 -41844871 - MER5B DNA MER1_type -134 44 1 2137 122 3 0 chr15 59535665 59535961 -41844560 - AluSg SINE Alu -13 297 1 250 200 368 0 chr15 59536279 59536404 -41844117 + MER5B DNA MER1_type 2 172 -6 1349 146 49 0 chr15 59536894 59537120 -41843401 - L1MA5 LINE L1 -6 6294 6058 2348 69 14 0 chr15 59537133 59537423 -41843098 - AluY SINE Alu -17 294 1 230 196 22 0 chr15 59537663 59537709 -41842812 - MIR SINE MIR -66 142 96 1999 132 4 7 chr15 59538048 59538329 -41842192 + AluSx SINE Alu 1 280 -32 21 23 0 47 chr15 59540143 59540165 -41840356 + AT_rich Low_complexity Low_complexity 1 22 -19 2338 91 3 3 chr15 59540165 59540463 -41840058 + AluSx SINE Alu 1 298 -14 21 23 0 47 chr15 59540463 59540483 -41840038 + AT_rich Low_complexity Low_complexity 22 41 0 305 239 15 62 chr15 59541228 59541358 -41839163 + L1MC5 LINE L1 7813 7936 -25 2306 85 3 0 chr15 59542303 59542597 -41837924 - AluY SINE Alu -16 295 1 343 214 0 0 chr15 59542597 59542653 -41837868 - Tigger7 DNA MER2_type -2405 82 27 749 311 27 54 chr15 59542674 59543115 -41837406 - MLT1K LTR MaLR -12 576 148 409 349 15 0 chr15 59543412 59543544 -41836977 - L2 LINE L2 -1 3271 3138 2402 88 3 0 chr15 59543583 59543877 -41836644 + AluSc SINE Alu 1 295 -14 2364 76 0 30 chr15 59545043 59545345 -41835176 - AluY SINE Alu -18 293 1 279 0 0 0 chr15 59545622 59545653 -41834868 + (TG)n Simple_repeat Simple_repeat 2 32 0 186 161 0 0 chr15 59545903 59545934 -41834587 + L2 LINE L2 3279 3309 -4 285 164 82 0 chr15 59548501 59548562 -41831959 - MLT1K LTR MaLR -30 558 493 641 185 22 30 chr15 59549406 59549541 -41830980 - FLAM_C SINE Alu -8 135 2 390 21 0 0 chr15 59549583 59549630 -41830891 + (TCCA)n Simple_repeat Simple_repeat 1 47 0 249 310 62 35 chr15 59549631 59549744 -41830777 - L2 LINE L2 -25 3247 3132 244 289 48 38 chr15 59550011 59550132 -41830389 - MER5B DNA MER1_type -51 127 17 3543 128 25 4 chr15 59550911 59551426 -41829095 - MER1A DNA MER1_type -1 526 1 2032 126 18 0 chr15 59551497 59551621 -41828900 + AluSg SINE Alu 1 121 -189 315 0 0 0 chr15 59551621 59551656 -41828865 + (CA)n Simple_repeat Simple_repeat 2 36 0 2032 126 18 0 chr15 59551656 59551817 -41828704 + AluSg SINE Alu 121 291 -19 759 242 111 5 chr15 59552124 59552314 -41828207 - MER20 DNA MER1_type -9 210 1 3358 199 24 2 chr15 59552408 59553046 -41827475 - MER82 DNA MER2_type 0 653 2 234 261 152 11 chr15 59553177 59553269 -41827252 - L1ME LINE L1 -490 5631 5527 2181 97 38 0 chr15 59553321 59553611 -41826910 + AluSx SINE Alu 1 301 -11 22 35 0 0 chr15 59553768 59553797 -41826724 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr15 59553911 59553939 -41826582 + AT_rich Low_complexity Low_complexity 1 28 0 282 307 115 24 chr15 59555711 59555998 -41824523 - L1ME LINE L1 -1098 5048 4736 358 300 118 35 chr15 59556039 59556326 -41824195 - L1ME LINE L1 -1436 4710 4400 1651 168 57 20 chr15 59556408 59556706 -41823815 - AluJb SINE Alu -3 309 1 296 303 86 12 chr15 59556763 59556925 -41823596 - L1P LINE L1 -1911 4235 4062 1963 66 4 46 chr15 59557689 59557948 -41822573 - AluSq SINE Alu -65 248 1 3576 103 14 59 chr15 59558560 59559152 -41821369 - MER34B LTR ERV1 0 565 1 946 113 0 0 chr15 59560347 59560480 -41820041 - AluSg/x SINE Alu -11 301 169 1402 90 6 0 chr15 59560556 59560733 -41819788 - AluSq SINE Alu -135 178 1 252 0 0 0 chr15 59562636 59562664 -41817857 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 6164 84 27 3 chr15 59562666 59563012 -41817509 - L1PB1 LINE L1 -13 6138 5802 585 0 0 0 chr15 59563012 59563077 -41817444 + (CA)n Simple_repeat Simple_repeat 1 65 0 6164 84 27 3 chr15 59563077 59563786 -41816735 - L1PB1 LINE L1 -349 5802 5063 2280 103 7 3 chr15 59564730 59565032 -41815489 + AluSx SINE Alu 1 303 -9 203 259 170 45 chr15 59565828 59565940 -41814581 - L2 LINE L2 -10 3262 3137 279 0 0 0 chr15 59566016 59566047 -41814474 + (TG)n Simple_repeat Simple_repeat 2 32 0 361 191 96 0 chr15 59566047 59566141 -41814380 + MIR SINE MIR 104 206 -56 354 281 47 23 chr15 59566378 59566506 -41814015 - L2 LINE L2 -1 3312 3182 749 182 0 0 chr15 59566726 59566847 -41813674 - AluJo SINE Alu -9 303 183 518 234 37 0 chr15 59566850 59566957 -41813564 - AluJo SINE Alu -200 112 2 30 0 0 0 chr15 59566961 59566991 -41813530 + AT_rich Low_complexity Low_complexity 1 30 0 468 298 116 35 chr15 59567002 59567509 -41813012 - L1ME4a LINE L1 -20 6101 5554 1911 137 0 14 chr15 59567658 59567943 -41812578 + AluSx SINE Alu 1 281 -31 1061 235 155 31 chr15 59568983 59569429 -41811092 - MLT1D LTR MaLR 0 505 5 282 268 14 0 chr15 59570605 59570676 -41809845 + CT-rich Low_complexity Low_complexity 2 73 0 966 209 33 0 chr15 59570723 59570934 -41809587 - MER20 DNA MER1_type -1 218 1 369 0 0 0 chr15 59571009 59571050 -41809471 + (TG)n Simple_repeat Simple_repeat 2 42 0 583 231 111 32 chr15 59571721 59571937 -41808584 - L1MC5 LINE L1 -52 7909 7677 1918 122 0 28 chr15 59572343 59572630 -41807891 - AluJo SINE Alu -12 300 22 183 156 0 0 chr15 59573863 59573895 -41806626 + T-rich Low_complexity Low_complexity 1 32 0 1793 175 6 16 chr15 59574400 59574715 -41805806 + AluJo SINE Alu 1 312 0 345 130 65 26 chr15 59574837 59574914 -41805607 - MER5C DNA MER1_type -196 128 49 258 32 0 0 chr15 59575001 59575032 -41805489 + (CA)n Simple_repeat Simple_repeat 2 32 0 520 111 0 0 chr15 59575604 59575685 -41804836 + AluS SINE Alu 228 308 -1 189 0 0 0 chr15 59575988 59576009 -41804512 + (T)n Simple_repeat Simple_repeat 1 21 0 2467 74 3 3 chr15 59576555 59576865 -41803656 + AluSp SINE Alu 2 311 -2 500 220 6 71 chr15 59576912 59577080 -41803441 + L1MC5 LINE L1 7749 7905 -56 3814 63 2 0 chr15 59577090 59577563 -41802958 - L1PA6 LINE L1 -4 6150 5677 2303 96 3 0 chr15 59577683 59577976 -41802545 + AluSx SINE Alu 7 300 -12 1047 191 43 9 chr15 59579573 59579783 -41800738 - L1MC1 LINE L1 -1 6332 6116 255 103 0 0 chr15 59579786 59579825 -41800696 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 1833 161 0 0 chr15 59579829 59580103 -41800418 - AluJb SINE Alu -38 274 1 1971 139 5 46 chr15 59580103 59580269 -41800252 - L1MC1 LINE L1 -206 6127 5956 2183 109 16 3 chr15 59580269 59580572 -41799949 - AluSq SINE Alu -6 307 1 1971 139 5 46 chr15 59580572 59580768 -41799753 - L1MC1 LINE L1 -377 5956 5780 2337 114 0 0 chr15 59581154 59581462 -41799059 + AluSq SINE Alu 1 308 -5 483 18 0 0 chr15 59581585 59581641 -41798880 + (CA)n Simple_repeat Simple_repeat 1 56 0 315 333 44 7 chr15 59581736 59581871 -41798650 - L2 LINE L2 -18 3254 3115 269 225 70 0 chr15 59583120 59583191 -41797330 - L2 LINE L2 -48 3265 3190 249 323 8 39 chr15 59584718 59584848 -41795673 - MIR SINE MIR -12 250 125 342 259 168 5 chr15 59585332 59585509 -41795012 - MIR SINE MIR -40 222 19 370 273 154 63 chr15 59586845 59587282 -41793239 - L1ME4a LINE L1 -195 5926 5413 2382 75 0 0 chr15 59587282 59587574 -41792947 - AluY SINE Alu -19 292 1 370 273 154 63 chr15 59587574 59587680 -41792841 - L1ME4a LINE L1 -708 5413 5318 2039 127 14 0 chr15 59587751 59588035 -41792486 + AluSq SINE Alu 5 292 -21 418 101 13 13 chr15 59588035 59588114 -41792407 + (TA)n Simple_repeat Simple_repeat 1 79 0 207 139 0 0 chr15 59589510 59589546 -41790975 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 607 285 58 52 chr15 59589546 59589663 -41790858 + L1MC4a LINE L1 5598 5713 -2095 2234 98 3 3 chr15 59589663 59589959 -41790562 - AluSx SINE Alu -16 296 1 607 285 58 52 chr15 59589959 59590171 -41790350 + L1MC4a LINE L1 5713 5929 -1879 1489 167 51 27 chr15 59590479 59590773 -41789748 + AluJo SINE Alu 1 301 -11 180 0 0 0 chr15 59591177 59591197 -41789324 + (A)n Simple_repeat Simple_repeat 1 20 0 279 185 252 0 chr15 59591813 59591932 -41788589 + L1ME4a LINE L1 5970 6118 -3 1637 103 0 0 chr15 59593520 59593734 -41786787 + AluSg/x SINE Alu 83 296 -16 21 0 0 0 chr15 59593797 59593818 -41786703 + AT_rich Low_complexity Low_complexity 1 21 0 342 0 0 0 chr15 59596888 59596926 -41783595 + (TG)n Simple_repeat Simple_repeat 2 39 0 3571 151 40 47 chr15 59597714 59598534 -41781987 + MER4D LTR ERV1 1 903 0 336 24 0 0 chr15 59601600 59601641 -41778880 + (CG)n Simple_repeat Simple_repeat 2 42 0 5034 133 94 15 chr15 59602136 59602427 -41778094 + L1MA8 LINE L1 5191 5458 -833 2299 72 38 0 chr15 59602427 59602718 -41777803 + AluSq SINE Alu 1 302 -11 5034 133 94 15 chr15 59602718 59603280 -41777241 + L1MA8 LINE L1 5458 6139 -152 2389 45 42 7 chr15 59603280 59603567 -41776954 + AluY SINE Alu 1 297 -14 5034 133 94 15 chr15 59603567 59603721 -41776800 + L1MA8 LINE L1 6139 6280 -11 2073 134 7 10 chr15 59603744 59604042 -41776479 + AluSx SINE Alu 1 297 -15 254 252 57 49 chr15 59604058 59604181 -41776340 - HAL1 LINE L1 -6 2501 2378 2290 127 8 14 chr15 59604970 59605333 -41775188 - MER46B DNA MER2_type 0 236 1 1298 101 0 5 chr15 59606415 59606604 -41773917 - L1 LINE L1 -1315 4831 4644 22 35 0 0 chr15 59606628 59606657 -41773864 + AT_rich Low_complexity Low_complexity 1 29 0 2334 235 54 30 chr15 59709700 59710406 -41670115 - L1ME LINE L1 -4153 1927 1205 252 0 0 0 chr15 59710406 59710434 -41670087 + (T)n Simple_repeat Simple_repeat 1 28 0 423 98 0 65 chr15 59710436 59710528 -41669993 - SVA Other Other -627 759 674 5685 70 23 54 chr15 59710542 59711593 -41668928 - SVA Other Other -520 866 23 2158 103 3 28 chr15 59711693 59712013 -41668508 + AluSx SINE Alu 1 312 0 2245 110 0 7 chr15 59712621 59712922 -41667599 - AluSx SINE Alu -13 299 1 687 281 79 47 chr15 59713210 59713551 -41666970 + L1MDa LINE L1 34 385 -6155 2955 218 62 36 chr15 59713707 59713997 -41666524 + L1MDa LINE L1 770 1051 -5489 1559 145 78 46 chr15 59713997 59714279 -41666242 + AluJo SINE Alu 1 291 -21 2955 218 62 36 chr15 59714279 59714899 -41665622 + L1MDa LINE L1 1051 1679 -4861 415 271 16 29 chr15 59714918 59715136 -41665385 - L1ME LINE L1 -5101 969 783 2199 120 0 0 chr15 59715513 59715805 -41664716 - AluSx SINE Alu -20 292 1 2274 103 0 13 chr15 59715905 59716217 -41664304 - AluSq SINE Alu -5 308 1 198 167 0 0 chr15 59716440 59716476 -41664045 + (CA)n Simple_repeat Simple_repeat 2 37 0 212 296 27 27 chr15 59716477 59716589 -41663932 + MER5A DNA MER1_type 77 177 -1 1118 188 11 71 chr15 59718119 59718176 -41662345 + L1MD3 LINE L1 7730 7789 -206 2529 62 7 3 chr15 59718176 59718481 -41662040 + AluY SINE Alu 1 306 -5 1118 188 11 71 chr15 59718481 59718705 -41661816 + L1MD3 LINE L1 7789 7994 -1 577 278 94 31 chr15 59718814 59719134 -41661387 + L1MC4a LINE L1 5480 5819 -302 2404 106 0 0 chr15 59719167 59719479 -41661042 + AluSx SINE Alu 1 312 0 1406 226 85 32 chr15 59719629 59720063 -41660458 + MER74B LTR ERVL 89 545 -77 439 287 44 13 chr15 59721335 59721517 -41659004 + MIR SINE MIR 16 202 -60 22 56 0 0 chr15 59723462 59723498 -41657023 + AT_rich Low_complexity Low_complexity 1 36 0 2127 104 35 0 chr15 59723521 59723809 -41656712 + AluSp SINE Alu 1 298 -15 213 190 0 51 chr15 59723867 59723946 -41656575 + GA-rich Low_complexity Low_complexity 2 76 0 313 359 15 30 chr15 59724560 59724705 -41655816 + MIR SINE MIR 2 145 -117 2059 119 3 3 chr15 59724705 59724998 -41655523 + AluSx SINE Alu 5 297 -15 313 359 15 30 chr15 59724998 59725050 -41655471 + MIR SINE MIR 145 196 -66 1726 148 48 28 chr15 59726814 59727104 -41653417 + AluSx SINE Alu 1 296 -16 641 274 129 74 chr15 59728015 59728510 -41652011 + L1MC4a LINE L1 5856 6322 -1486 264 30 0 0 chr15 59728510 59728543 -41651978 + (CA)n Simple_repeat Simple_repeat 2 34 0 641 274 129 74 chr15 59728543 59729045 -41651476 + L1MC4a LINE L1 6322 6908 -900 579 162 110 19 chr15 59729043 59729197 -41651324 - L1MC5 LINE L1 -49 7912 7745 * 517 204 182 51 chr15 59729207 59729520 -41651001 + L1MC5 LINE L1 6886 7239 -722 621 231 53 82 chr15 59729646 59729928 -41650593 + L1MC5 LINE L1 7261 7534 -427 * 2980 185 58 4 chr15 59729920 59731056 -41649465 + L1MB7 LINE L1 4738 5930 -254 204 263 26 53 chr15 59731193 59731269 -41649252 - MIR SINE MIR -69 139 66 1650 229 46 33 chr15 59731798 59732344 -41648177 + L1ME LINE L1 2318 2870 -3276 955 183 78 58 chr15 59732484 59732741 -41647780 - HAL1 LINE L1 0 2507 2246 501 236 104 0 chr15 59733202 59733346 -41647175 - MIR SINE MIR -48 214 56 454 298 107 8 chr15 59734985 59735227 -41645294 + L1ME4a LINE L1 5479 5744 -377 269 171 0 0 chr15 59735230 59735271 -41645250 - 5S rRNA rRNA -79 42 2 314 298 44 19 chr15 59735272 59735430 -41645091 + L1ME4a LINE L1 5733 5894 -227 446 244 209 25 chr15 59737963 59738164 -41642357 - MIR SINE MIR -12 250 13 1150 194 133 7 chr15 59738231 59738509 -41642012 + MER58B DNA MER1_type 3 315 -26 1366 158 147 19 chr15 59738571 59738837 -41641684 + AluJb SINE Alu 1 300 -2 389 261 87 0 chr15 59738879 59738994 -41641527 - MIR SINE MIR -56 206 82 3578 148 8 3 chr15 59739443 59740043 -41640478 + L1PB3 LINE L1 5552 6154 0 1550 263 57 2 chr15 59740251 59740726 -41639795 + L1ME LINE L1 4431 4931 -1215 1022 190 139 0 chr15 59740706 59740922 -41639599 + L1MD2 LINE L1 6055 6300 -59 * 3061 188 25 7 chr15 59740934 59741524 -41638997 - L1MB8 LINE L1 -106 6072 5472 2108 138 0 0 chr15 59741774 59742077 -41638444 - AluSx SINE Alu 0 303 1 208 308 26 26 chr15 59742304 59742382 -41638139 - MIR3 SINE MIR -26 182 105 2578 80 0 0 chr15 59742427 59742738 -41637783 - AluY SINE Alu 0 311 1 306 0 0 0 chr15 59748885 59748919 -41631602 + (TG)n Simple_repeat Simple_repeat 2 35 0 324 264 72 16 chr15 59748995 59749120 -41631401 - L1ME LINE L1 -313 5808 5677 330 270 94 64 chr15 59749414 59749681 -41630840 - L1ME LINE L1 -481 5640 5366 29 47 0 0 chr15 59749728 59749771 -41630750 + AT_rich Low_complexity Low_complexity 1 43 0 615 259 81 20 chr15 59749808 59750055 -41630466 + L1ME LINE L1 5558 5819 -302 389 343 12 13 chr15 59751511 59751696 -41628825 + MER5A DNA MER1_type 3 176 -2 2325 95 0 16 chr15 59752775 59753080 -41627441 + AluSq SINE Alu 1 300 -13 196 237 186 0 chr15 59753304 59753363 -41627158 + L2 LINE L2 3241 3310 -3 1758 186 0 3 chr15 59753464 59753759 -41626762 - AluJo SINE Alu -18 294 1 535 286 167 5 chr15 59755429 59755639 -41624882 + MIR SINE MIR 16 259 -3 716 277 16 0 chr15 59755659 59755843 -41624678 - MER5A DNA MER1_type -2 187 1 444 244 167 6 chr15 59755937 59756093 -41624428 + MER5A DNA MER1_type 9 189 0 577 260 29 12 chr15 59756102 59756275 -41624246 + MER5B DNA MER1_type 3 178 0 233 358 86 13 chr15 59756761 59756912 -41623609 - MIR3 SINE MIR -3 205 44 26 0 0 0 chr15 59757616 59757642 -41622879 + AT_rich Low_complexity Low_complexity 1 26 0 2423 85 3 0 chr15 59759455 59759750 -41620771 - AluSg SINE Alu -14 296 1 230 338 13 0 chr15 59759811 59759888 -41620633 - L1MC5 LINE L1 -78 7883 7806 378 61 0 0 chr15 59759953 59760002 -41620519 + (CA)n Simple_repeat Simple_repeat 2 50 0 27 49 0 0 chr15 59760473 59760514 -41620007 + AT_rich Low_complexity Low_complexity 1 41 0 843 171 119 5 chr15 59760516 59760726 -41619795 - MER69 DNA AcHobo -106 2420 2187 415 331 19 7 chr15 59760735 59760889 -41619632 - MER69 DNA AcHobo -1584 942 787 * 874 271 39 36 chr15 59760884 59761164 -41619357 - MER69 DNA AcHobo -707 519 239 21 36 0 0 chr15 59762007 59762035 -41618486 + AT_rich Low_complexity Low_complexity 1 28 0 218 250 126 34 chr15 59762377 59762500 -41618021 + MIR3 SINE MIR 61 196 -12 273 247 227 0 chr15 59762559 59762656 -41617865 - L2 LINE L2 0 3272 3154 294 322 93 0 chr15 59762905 59763023 -41617498 - L2 LINE L2 -10 3262 3134 186 156 0 0 chr15 59763061 59763106 -41617415 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 2344 108 0 10 chr15 59764615 59764929 -41615592 - AluSx SINE Alu -1 311 1 238 344 104 0 chr15 59764962 59765058 -41615463 + L2 LINE L2 3190 3295 -18 2174 107 10 23 chr15 59765162 59765471 -41615050 + AluSp SINE Alu 1 305 -8 536 223 38 25 chr15 59765480 59765637 -41614884 - MIR SINE MIR -37 225 67 2328 102 0 13 chr15 59766514 59766829 -41613692 - AluSx SINE Alu -1 311 1 306 0 0 0 chr15 59767233 59767267 -41613254 + (T)n Simple_repeat Simple_repeat 1 34 0 493 292 137 2 chr15 59767857 59768265 -41612256 + L2 LINE L2 1737 2199 -1115 183 80 0 0 chr15 59769958 59769983 -41610538 + (TCTCG)n Simple_repeat Simple_repeat 2 26 0 2331 108 3 0 chr15 59769983 59770289 -41610232 - AluSx SINE Alu -5 307 1 299 289 21 10 chr15 59770499 59770606 -41609915 - MIR SINE MIR -65 143 47 1655 179 55 0 chr15 59771966 59772257 -41608264 + AluJo SINE Alu 1 307 -5 2269 112 0 7 chr15 59772373 59772676 -41607845 - AluSq SINE Alu -11 302 2 1823 135 21 11 chr15 59772684 59772965 -41607556 - AluJb SINE Alu -24 288 5 26 30 0 0 chr15 59774873 59774906 -41605615 + AT_rich Low_complexity Low_complexity 1 33 0 233 173 77 0 chr15 59775347 59775399 -41605122 + Zaphod DNA AcHobo 1175 1230 -2801 320 281 55 0 chr15 59776352 59776480 -41604041 - L3 LINE CR1 -272 1305 1171 1673 171 65 98 chr15 59778610 59779118 -41601403 - L1MA9 LINE L1 -38 6274 5784 336 231 0 13 chr15 59779118 59779196 -41601325 - MARNA DNA Mariner -361 225 149 239 303 56 11 chr15 59779270 59779359 -41601162 + MIR SINE MIR 59 151 -57 708 148 66 66 chr15 59779628 59779693 -41600828 + MER5A DNA MER1_type 7 71 -118 2596 50 0 3 chr15 59779693 59779996 -41600525 + AluY SINE Alu 2 303 -8 708 148 66 66 chr15 59779996 59780113 -41600408 + MER5A DNA MER1_type 70 189 0 301 109 22 0 chr15 59780319 59780365 -41600156 - MLT1A1 LTR MaLR -4 392 346 22 70 0 0 chr15 59780373 59780416 -41600105 + AT_rich Low_complexity Low_complexity 1 43 0 1111 196 71 58 chr15 59780419 59780730 -41599791 - MLT1A1 LTR MaLR -50 315 1 1337 186 89 0 chr15 59781608 59781887 -41598634 + AluJo SINE Alu 1 302 0 2310 93 10 3 chr15 59782079 59782381 -41598140 - AluSp SINE Alu -9 304 1 239 292 50 8 chr15 59782553 59782673 -41597848 - L1ME LINE L1 -691 5475 5351 305 257 74 54 chr15 59782730 59782878 -41597643 - L1ME LINE L1 -869 5277 5127 517 299 86 44 chr15 59782893 59783747 -41596774 - L1ME LINE L1 -1360 4786 3881 2388 62 27 0 chr15 59783843 59784135 -41596386 + AluY SINE Alu 1 300 -11 620 242 29 57 chr15 59784135 59784379 -41596142 + L2 LINE L2 3077 3313 0 338 217 108 25 chr15 59784752 59784872 -41595649 - L1ME LINE L1 -2873 3273 3144 434 260 67 81 chr15 59784872 59785364 -41595157 - L1ME LINE L1 -3531 2615 2131 239 137 98 0 chr15 59785516 59785567 -41594954 - Zaphod DNA AcHobo -2801 1230 1175 224 308 71 24 chr15 59786449 59786618 -41593903 + MIR3 SINE MIR 17 193 -15 490 178 103 182 chr15 59789987 59790229 -41590292 - MER58A DNA MER1_type 0 224 2 311 330 35 0 chr15 59790342 59790457 -41590064 - MIR3 SINE MIR -24 184 66 2386 102 0 3 chr15 59792174 59792478 -41588043 - AluSx SINE Alu -2 310 8 1067 184 118 76 chr15 59792488 59792807 -41587714 + L1MC5 LINE L1 7165 7469 -492 905 193 42 0 chr15 59792807 59793019 -41587502 + L1MA7 LINE L1 6066 6286 -5 1067 184 118 76 chr15 59793019 59793198 -41587323 + L1MC5 LINE L1 7469 7688 -273 2113 130 6 16 chr15 59793198 59793513 -41587008 - AluSx SINE Alu 0 312 1 1067 184 118 76 chr15 59793513 59793529 -41586992 + L1MC5 LINE L1 7688 7702 -259 225 0 0 0 chr15 59794362 59794387 -41586134 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 824 268 136 9 chr15 59795740 59796079 -41584442 - L1ME3A LINE L1 0 6170 5789 523 310 13 0 chr15 59797547 59797705 -41582816 - MIR SINE MIR -18 244 85 240 35 0 0 chr15 59798142 59798171 -41582350 + (T)n Simple_repeat Simple_repeat 1 29 0 323 231 14 91 chr15 59799526 59799603 -41580918 - L1ME3A LINE L1 -51 6119 6056 1987 119 0 56 chr15 59799603 59799923 -41580598 + AluSx SINE Alu 1 302 -10 323 231 14 91 chr15 59799923 59799988 -41580533 - L1ME3A LINE L1 -114 6056 5988 2383 97 10 0 chr15 59802261 59802570 -41577951 - AluSp SINE Alu -1 312 1 289 200 14 14 chr15 59803048 59803118 -41577403 + MER5A DNA MER1_type 15 84 -105 717 218 233 62 chr15 59803137 59803527 -41576994 - MLT1D LTR MaLR -45 460 4 473 282 60 35 chr15 59803728 59803977 -41576544 - MIR SINE MIR -8 254 3 424 314 148 6 chr15 59804263 59804432 -41576089 + MER91A DNA MER1_type 3 195 -1 224 301 120 46 chr15 59805001 59805217 -41575304 + MIR SINE MIR 21 252 -10 249 326 101 40 chr15 59806599 59806875 -41573646 - L2 LINE L2 -353 2961 2669 884 199 108 101 chr15 59806891 59807187 -41573334 - AluJo SINE Alu -3 299 2 2437 84 0 3 chr15 59807587 59807895 -41572626 - AluSq SINE Alu -6 307 1 229 297 91 17 chr15 59808387 59808495 -41572026 + MIR SINE MIR 19 147 -61 216 284 136 30 chr15 59808721 59808890 -41571631 - L3 LINE CR1 -75 1502 1316 196 318 18 45 chr15 59809261 59809371 -41571150 - L2 LINE L2 -208 3064 2958 2278 59 11 0 chr15 59809645 59809918 -41570603 - AluY SINE Alu -9 302 27 206 250 24 60 chr15 59810667 59810751 -41569770 - MIR SINE MIR -111 97 17 234 158 70 18 chr15 59811850 59811907 -41568614 + MIR SINE MIR 123 182 -80 2382 65 24 0 chr15 59811945 59812236 -41568285 + AluSp SINE Alu 1 298 -15 248 333 40 10 chr15 59812236 59812335 -41568186 + MER5A DNA MER1_type 3 104 -85 232 308 140 7 chr15 59812263 59812406 -41568115 - MER5B DNA MER1_type -16 162 1 * 182 37 37 0 chr15 59814022 59814049 -41566472 + (TTTTTG)n Simple_repeat Simple_repeat 1 28 0 230 231 0 0 chr15 59814972 59815024 -41565497 + (CAT)n Simple_repeat Simple_repeat 3 54 0 273 313 73 31 chr15 59815445 59815637 -41564884 + L2 LINE L2 2882 3081 -191 208 93 23 23 chr15 59816493 59816536 -41563985 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 243 0 0 0 chr15 59818410 59818437 -41562084 + (TG)n Simple_repeat Simple_repeat 2 28 0 1722 146 68 4 chr15 59820073 59820353 -41560168 + AluSx SINE Alu 1 298 -14 211 316 38 0 chr15 59820366 59820445 -41560076 + L3b LINE CR1 1416 1497 -86 628 75 0 0 chr15 59821495 59821575 -41558946 + MADE1 DNA Mariner 1 80 0 1738 154 36 14 chr15 59821601 59821881 -41558640 - AluJo SINE Alu -26 286 1 2169 110 23 3 chr15 59822380 59822679 -41557842 - AluSx SINE Alu -7 305 1 914 137 8 0 chr15 59822789 59822920 -41557601 - AluJb SINE Alu -179 133 2 355 204 148 19 chr15 59822937 59822960 -41557561 + MIR SINE MIR 8 27 -235 1888 148 4 0 chr15 59822960 59823237 -41557284 + AluSx SINE Alu 23 300 -12 355 204 148 19 chr15 59823237 59823321 -41557200 + MIR SINE MIR 27 129 -133 205 303 79 0 chr15 59824315 59824391 -41556130 + MIR3 SINE MIR 5 86 -122 350 288 75 52 chr15 59824716 59824928 -41555593 - MIR SINE MIR -28 234 18 265 229 16 0 chr15 59824978 59825039 -41555482 + L2 LINE L2 3247 3308 -5 337 241 46 0 chr15 59825042 59825129 -41555392 - MIR SINE MIR -60 148 58 326 212 100 98 chr15 59825841 59826025 -41554496 - MIR SINE MIR -75 187 4 305 267 129 52 chr15 59826545 59826755 -41553766 + HAL1 LINE L1 91 316 -2191 230 260 130 0 chr15 59826843 59826943 -41553578 + HAL1 LINE L1 2266 2378 -129 232 279 24 61 chr15 59827024 59827044 -41553477 - L1MA10 LINE L1 -1 6333 6314 1904 247 124 37 chr15 59827044 59828625 -41551896 - L1ME2 LINE L1 -9 6089 4377 386 254 50 86 chr15 59828623 59829003 -41551518 - L1ME2 LINE L1 -3823 2257 1925 * 2219 112 0 40 chr15 59829087 59829409 -41551112 - AluSc SINE Alu 0 309 1 652 274 123 41 chr15 59829479 59830361 -41550160 - L1ME2 LINE L1 -4512 1568 678 364 266 149 32 chr15 59830760 59830948 -41549573 - L1ME2 LINE L1 -5855 215 6 711 316 193 38 chr15 59831481 59832451 -41548070 - L2 LINE L2 -411 2903 1784 2797 228 13 21 chr15 59834501 59835100 -41545421 + L1ME3 LINE L1 5341 5936 -226 2263 57 13 27 chr15 59835100 59835401 -41545120 + AluY SINE Alu 1 297 -14 2797 228 13 21 chr15 59835401 59835472 -41545049 + L1ME3 LINE L1 5936 6006 -156 338 250 11 11 chr15 59835479 59835571 -41544950 + L1ME3 LINE L1 6062 6153 -9 346 250 0 0 chr15 59838069 59838145 -41542376 + MIR SINE MIR 1 76 -186 227 224 102 0 chr15 59838186 59838235 -41542286 + L2 LINE L2 3219 3272 0 215 222 0 37 chr15 59840232 59840286 -41540235 - L2 LINE L2 -6 3266 3215 183 80 0 0 chr15 59840809 59840834 -41539687 + (TG)n Simple_repeat Simple_repeat 2 26 0 400 319 56 14 chr15 59840879 59841023 -41539498 + MIR3 SINE MIR 36 185 -23 441 0 0 0 chr15 59841090 59841139 -41539382 + (TG)n Simple_repeat Simple_repeat 1 49 0 553 179 154 17 chr15 59843473 59843590 -41536931 - FLAM_A SINE Alu 0 133 1 2280 80 0 3 chr15 59843608 59843909 -41536612 - AluSg SINE Alu -10 300 1 252 280 138 19 chr15 59844560 59844828 -41535693 - L1ME4a LINE L1 -121 6000 5701 210 317 158 10 chr15 59845889 59845990 -41534531 + MIR SINE MIR 36 151 -57 287 228 38 13 chr15 59845994 59846073 -41534448 + L1M4 LINE L1 4730 4810 -1336 380 198 16 79 chr15 59846077 59846203 -41534318 + L1M4 LINE L1 4881 4998 -1148 2042 139 76 134 chr15 59846716 59847177 -41533344 - Tigger2 DNA MER2_type 0 2718 1 201 139 0 0 chr15 59847555 59847598 -41532923 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 908 160 77 0 chr15 59849706 59849875 -41530646 - MER5A DNA MER1_type -6 183 2 382 178 15 78 chr15 59850019 59850035 -41530486 + MER106B DNA MER1_type 30 45 -191 207 0 0 0 chr15 59850035 59850058 -41530463 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 382 178 15 78 chr15 59850058 59850232 -41530289 + MER106B DNA MER1_type 45 235 -1 275 310 30 50 chr15 59852332 59852532 -41527989 - MLT1L LTR MaLR -52 563 368 1246 198 54 0 chr15 59853986 59854264 -41526257 + MER33 DNA MER1_type 1 293 -31 756 188 147 0 chr15 59856141 59856311 -41524210 - MIR SINE MIR -52 210 16 371 314 74 11 chr15 59857840 59858015 -41522506 + MIR3 SINE MIR 16 201 -7 367 308 101 19 chr15 59858311 59858470 -41522051 - MIR SINE MIR -13 249 78 213 266 76 13 chr15 59858528 59858607 -41521914 - MIR SINE MIR -156 106 23 575 238 166 7 chr15 59860245 59860396 -41520125 + MIR3 SINE MIR 23 197 -11 1931 99 3 81 chr15 59860887 59861209 -41519312 + AluSx SINE Alu 1 297 -15 339 297 10 10 chr15 59862034 59862135 -41518386 + MIR SINE MIR 156 256 -6 546 303 22 32 chr15 59863215 59863400 -41517121 + MIR SINE MIR 80 262 0 180 297 188 0 chr15 59864204 59864268 -41516253 + L2 LINE L2 3186 3261 -11 940 267 23 23 chr15 59865609 59865867 -41514654 - MIR SINE MIR 0 262 5 862 66 0 0 chr15 59868753 59868859 -41511662 + AluSq SINE Alu 146 251 -62 254 261 54 63 chr15 59869075 59869186 -41511335 + MIR SINE MIR 153 262 0 580 279 176 46 chr15 59869386 59869777 -41510744 - L2 LINE L2 -5 3308 2867 441 138 52 15 chr15 59871618 59871660 -41508861 + L1M1 LINE L1 5677 5716 -450 3205 93 36 30 chr15 59871660 59872184 -41508337 - L1MA2 LINE L1 -1 7722 7196 441 138 52 15 chr15 59872184 59872242 -41508279 + L1M1 LINE L1 5716 5773 -393 210 37 0 0 chr15 59872251 59872278 -41508243 + (CA)n Simple_repeat Simple_repeat 2 28 0 271 71 24 24 chr15 59872293 59872335 -41508186 + L1M3 LINE L1 5677 5718 -616 3349 101 25 4 chr15 59872341 59872924 -41507597 - L1MA2 LINE L1 -576 7148 6547 * 7288 109 74 0 chr15 59872918 59874024 -41506497 - L1MA2 LINE L1 -4671 2894 1707 1339 181 0 0 chr15 59874157 59874389 -41506132 + AluJb SINE Alu 1 232 -80 1531 151 30 50 chr15 59875749 59876048 -41504473 + AluJo SINE Alu 1 293 -19 445 229 74 13 chr15 59877126 59877315 -41503206 - MIR SINE MIR -46 216 16 606 289 117 11 chr15 59878157 59878430 -41502091 - L1ME LINE L1 -302 5819 5518 350 107 93 27 chr15 59878990 59879065 -41501456 + MER53 DNA DNA 110 189 0 256 304 143 24 chr15 59880764 59880958 -41499563 - MIR SINE MIR -33 229 17 224 330 126 10 chr15 59881389 59881492 -41499029 + MIR SINE MIR 37 151 -57 1970 129 4 0 chr15 59881573 59881853 -41498668 + AluSx SINE Alu 2 328 0 415 0 0 0 chr15 59881853 59881899 -41498622 + (TAAA)n Simple_repeat Simple_repeat 3 160 0 1949 121 24 0 chr15 59883659 59883949 -41496572 - AluSq SINE Alu -16 297 1 498 17 0 0 chr15 59885019 59885078 -41495443 + (CA)n Simple_repeat Simple_repeat 1 59 0 190 324 19 38 chr15 59885235 59885340 -41495181 + L3 LINE CR1 118 220 -1357 343 233 35 0 chr15 59886461 59886547 -41493974 - L1M4 LINE L1 -2027 4119 4031 386 221 53 0 chr15 59886762 59886857 -41493664 + MER5B DNA MER1_type 1 100 -78 296 233 124 23 chr15 59886862 59886991 -41493530 - MIR SINE MIR -58 204 63 349 293 43 86 chr15 59887581 59887656 -41492865 - MIR SINE MIR -6 256 188 2005 125 30 0 chr15 59887656 59887951 -41492570 - AluSx SINE Alu -8 304 1 349 293 43 86 chr15 59887951 59888015 -41492506 - MIR SINE MIR -74 188 123 1651 160 7 20 chr15 59888669 59889001 -41491520 - AluJo SINE Alu 0 312 1 387 278 60 33 chr15 59889123 59889274 -41491247 - MIR3 SINE MIR -18 190 36 630 149 0 0 chr15 59892418 59892552 -41487969 + (G)n Simple_repeat Simple_repeat 1 134 0 251 297 126 27 chr15 59893115 59893226 -41487295 + MIR SINE MIR 137 258 -4 216 313 15 0 chr15 59893363 59893430 -41487091 - MIR SINE MIR -32 230 163 296 257 133 9 chr15 59893644 59893757 -41486764 + L1ME4a LINE L1 5798 5924 -197 879 105 0 23 chr15 59896492 59896625 -41483896 + AluSx SINE Alu 1 130 -182 322 215 76 99 chr15 59896632 59896804 -41483717 + L1MC5 LINE L1 7572 7739 -222 1030 132 42 0 chr15 59896805 59896972 -41483549 + AluSx SINE Alu 132 305 -7 221 315 157 0 chr15 59898702 59898791 -41481730 - MIR SINE MIR -3 259 157 241 297 102 25 chr15 59899714 59899832 -41480689 - L2 LINE L2 0 3272 3146 295 187 286 13 chr15 59899894 59899996 -41480525 + MER5A DNA MER1_type 31 165 -13 219 69 0 0 chr15 59899997 59900026 -41480495 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 3183 78 68 17 chr15 59900046 59900072 -41480449 - L1MA1 LINE L1 -1 6301 6278 213 0 81 0 chr15 59900072 59900109 -41480412 + (TA)n Simple_repeat Simple_repeat 1 40 0 3183 78 68 17 chr15 59900109 59900136 -41480385 - L1MA1 LINE L1 -24 6278 6254 2695 100 8 0 chr15 59900136 59900497 -41480024 - THE1B LTR MaLR 0 364 1 3183 78 68 17 chr15 59900497 59900915 -41479606 - L1MA1 LINE L1 -48 6254 5805 209 250 12 71 chr15 59902241 59902325 -41478196 + MIR3 SINE MIR 118 196 -12 37 23 0 0 chr15 59902378 59902422 -41478099 + AT_rich Low_complexity Low_complexity 1 44 0 472 284 60 83 chr15 59902892 59903110 -41477411 + MIR SINE MIR 30 242 -20 569 111 11 0 chr15 59903130 59903220 -41477301 + L1MB4 LINE L1 6082 6172 -8 280 203 36 11 chr15 59904048 59904136 -41476385 + L1MB4 LINE L1 6068 6179 0 473 204 174 141 chr15 59907619 59907987 -41472534 - L1ME4a LINE L1 -30 6091 5712 416 261 97 36 chr15 59908259 59908425 -41472096 + MIR SINE MIR 37 212 -50 230 306 149 8 chr15 59908543 59908664 -41471857 + MIR SINE MIR 31 168 -94 229 289 107 0 chr15 59909142 59909263 -41471258 - L2 LINE L2 -1 3271 3138 648 285 108 20 chr15 59909952 59910343 -41470178 - MLT1J LTR MaLR -31 480 32 245 292 69 15 chr15 59910735 59910865 -41469656 - MER103 DNA DNA -7 159 23 272 344 56 36 chr15 59910982 59911177 -41469344 + MIR SINE MIR 61 259 -3 198 0 0 0 chr15 59912886 59912908 -41467613 + (TC)n Simple_repeat Simple_repeat 2 23 0 182 238 95 0 chr15 59914719 59914761 -41465760 - L2 LINE L2 -71 3201 3156 560 217 125 38 chr15 59917094 59917278 -41463243 - MIR SINE MIR -5 257 58 274 254 51 0 chr15 59917295 59917354 -41463167 - MIR SINE MIR -170 92 31 376 250 26 70 chr15 59919075 59919231 -41461290 + MER103 DNA DNA 2 150 -16 186 375 0 0 chr15 59919434 59919498 -41461023 + L2 LINE L2 3239 3302 -11 1947 131 3 0 chr15 59919860 59920151 -41460370 - AluSx SINE Alu -20 292 1 490 229 29 9 chr15 59920542 59920647 -41459874 + MLT1L LTR MaLR 145 251 -364 23 68 0 0 chr15 59920916 59920960 -41459561 + AT_rich Low_complexity Low_complexity 1 44 0 192 340 0 0 chr15 59921342 59921392 -41459129 + L2 LINE L2 3211 3260 -12 196 263 237 0 chr15 59922040 59922116 -41458405 + MIR SINE MIR 20 113 -95 504 265 141 64 chr15 59922281 59922367 -41458154 - MIR SINE MIR -10 252 174 2394 71 0 3 chr15 59922367 59922675 -41457846 - AluY SINE Alu -3 308 2 504 265 141 64 chr15 59922675 59922822 -41457699 - MIR SINE MIR -88 174 1 279 366 35 21 chr15 59922828 59922970 -41457551 - MIR SINE MIR -71 191 48 830 173 100 39 chr15 59923117 59923377 -41457144 - LTR37B LTR ERV1 0 468 193 1932 147 3 10 chr15 59923891 59924205 -41456316 - AluJb SINE Alu 0 312 1 883 203 14 59 chr15 59924476 59924698 -41455823 - MER58C DNA MER1_type 0 215 4 314 226 87 26 chr15 59924729 59924844 -41455677 + MIR SINE MIR 20 141 -121 204 313 30 0 chr15 59925550 59925617 -41454904 - MIR SINE MIR -123 139 71 1102 176 19 24 chr15 59925690 59925900 -41454621 + MER6B DNA MER2_type 2 210 0 2102 116 0 3 chr15 59926087 59926389 -41454132 + AluSc SINE Alu 1 301 -8 288 284 68 68 chr15 59926761 59926923 -41453598 - MIR SINE MIR 0 262 101 531 247 60 22 chr15 59927979 59928161 -41452360 - MER5A DNA MER1_type 0 189 1 198 311 76 30 chr15 59928393 59928525 -41451996 - MER5B DNA MER1_type -11 167 30 180 226 132 0 chr15 59929140 59929193 -41451328 + MIR SINE MIR 183 242 -20 237 266 76 0 chr15 59929200 59929279 -41451242 - L2 LINE L2 -35 3237 3153 12697 68 12 1 chr15 59929981 59932411 -41448110 + L1PA6 LINE L1 3703 6154 0 192 189 0 0 chr15 59932936 59932973 -41447548 + MIR SINE MIR 202 238 -24 217 250 78 0 chr15 59932993 59933057 -41447464 + L2 LINE L2 3229 3297 -16 4135 243 15 7 chr15 59933081 59934169 -41446352 + L1PA15 LINE L1 2087 3182 -2964 3251 199 15 6 chr15 59934152 59934825 -41445696 + L1PA15 LINE L1 4454 5132 -1014 * 1081 187 10 0 chr15 59934825 59935023 -41445498 + AluJb SINE Alu 84 283 -29 5121 130 61 7 chr15 59935023 59936016 -41444505 + L1PA15 LINE L1 5121 6165 0 2013 112 0 3 chr15 59936258 59936567 -41443954 + AluSq SINE Alu 1 308 0 224 194 0 0 chr15 59936640 59936676 -41443845 - L2 LINE L2 -4 3268 3233 354 291 67 15 chr15 59936699 59936833 -41443688 + MIR3 SINE MIR 20 160 -48 340 323 0 0 chr15 59937317 59937410 -41443111 + MIR SINE MIR 38 130 -78 436 325 38 13 chr15 59937790 59937947 -41442574 + MIR SINE MIR 99 259 -3 192 261 123 0 chr15 59937961 59938026 -41442495 + L2 LINE L2 3241 3313 0 953 178 29 0 chr15 59938046 59938220 -41442301 - MIR SINE MIR -43 219 41 1801 162 24 87 chr15 59938473 59938887 -41441634 + MLT1B LTR MaLR 3 390 0 180 0 0 0 chr15 59939112 59939132 -41441389 + (A)n Simple_repeat Simple_repeat 1 20 0 1786 150 7 0 chr15 59939572 59939866 -41440655 + AluJo SINE Alu 1 296 -16 1798 118 4 7 chr15 59940394 59940674 -41439847 + AluSx SINE Alu 34 312 0 41 58 0 0 chr15 59940853 59940922 -41439599 + AT_rich Low_complexity Low_complexity 1 69 0 1685 177 17 169 chr15 59941126 59941236 -41439285 + MLT1D LTR MaLR 1 126 -379 4133 118 8 12 chr15 59941236 59941883 -41438638 - L1PA14 LINE L1 0 6161 5518 1685 177 17 169 chr15 59941883 59942365 -41438156 + MLT1D LTR MaLR 126 503 -2 1717 159 10 3 chr15 59942608 59942904 -41437617 - AluJo SINE Alu -14 298 1 781 148 8 0 chr15 59943310 59943438 -41437083 - FLAM_C SINE Alu -4 129 1 2156 110 0 3 chr15 59943605 59943906 -41436615 + AluSg SINE Alu 1 300 -10 329 160 40 80 chr15 59944434 59944509 -41436012 + LTR33A LTR ERVL 444 515 -8 352 183 235 17 chr15 59945056 59945171 -41435350 - Charlie1 DNA MER1_type 0 2761 2622 * 778 185 210 0 chr15 59945154 59945354 -41435167 - Charlie1 DNA MER1_type -2519 242 1 451 250 115 26 chr15 59945376 59945532 -41434989 - MIR SINE MIR -67 195 26 377 271 77 40 chr15 59946669 59946836 -41433685 - MIR3 SINE MIR -51 157 16 33 0 0 0 chr15 59947045 59947078 -41433443 + AT_rich Low_complexity Low_complexity 1 33 0 327 250 39 47 chr15 59948670 59948798 -41431723 - LTR67 LTR ERVL -3 554 428 210 290 16 32 chr15 59949404 59949466 -41431055 - MIR SINE MIR -4 258 198 338 221 93 0 chr15 59949504 59949590 -41430931 + L1ME LINE L1 5710 5803 -367 2085 215 58 7 chr15 59949596 59950043 -41430478 + Charlie1a DNA MER1_type 1 470 -985 365 239 22 33 chr15 59950084 59950176 -41430345 - L1ME LINE L1 -526 5638 5548 238 241 0 0 chr15 59950377 59950431 -41430090 - HsTC2 DNA Tc2 0 1898 1845 1713 124 102 42 chr15 59950497 59950851 -41429670 - THE1C LTR MaLR 0 375 1 684 291 140 4 chr15 59950985 59951250 -41429271 - HsTC2 DNA Tc2 -1061 837 537 390 275 14 36 chr15 59951249 59951387 -41429134 - HsTC2 DNA Tc2 -1746 152 18 * 216 200 0 0 chr15 59951421 59951466 -41429055 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 634 259 96 59 chr15 59951498 59951737 -41428784 - MIR SINE MIR -5 257 10 2293 101 0 0 chr15 59952197 59952505 -41428016 + AluSc SINE Alu 1 308 -1 2466 190 62 44 chr15 59953229 59954014 -41426507 - L1ME LINE L1 -614 5552 4751 1141 160 39 74 chr15 59954027 59954283 -41426238 + MER34B LTR ERV1 17 263 -302 404 299 57 13 chr15 59954285 59954442 -41426079 - MIR SINE MIR -97 165 2 519 230 39 45 chr15 59954463 59954641 -41425880 + MER5B DNA MER1_type 2 178 0 310 333 51 14 chr15 59955475 59955613 -41424908 - MIR SINE MIR -51 211 69 732 167 0 23 chr15 59955734 59955866 -41424655 - FLAM_A SINE Alu -4 129 1 2644 111 72 0 chr15 59955935 59956350 -41424171 + MER65A LTR ERV1 1 445 0 280 242 11 22 chr15 59956627 59956718 -41423803 - L1MC4 LINE L1 -1339 6703 6614 2183 106 7 0 chr15 59956723 59957024 -41423497 - AluSx SINE Alu -9 303 1 298 277 30 10 chr15 59958401 59958502 -41422019 - MIR SINE MIR -81 127 25 536 291 102 46 chr15 59958516 59958839 -41421682 + L2 LINE L2 2972 3312 -1 2428 69 0 22 chr15 59958978 59959296 -41421225 - AluY SINE Alu 0 311 1 326 209 229 0 chr15 59959640 59959745 -41420776 - MIR3 SINE MIR -72 136 8 400 172 0 0 chr15 59959791 59959855 -41420666 + MADE1 DNA Mariner 1 64 -16 548 275 70 50 chr15 59960169 59960369 -41420152 + MIR SINE MIR 8 211 -51 335 307 129 43 chr15 59960408 59960571 -41419950 + L3 LINE CR1 1384 1560 -17 264 263 53 18 chr15 59960590 59960704 -41419817 - L2 LINE L2 -244 3028 2911 2164 96 0 3 chr15 59961156 59961449 -41419072 - AluSc SINE Alu -17 292 1 329 278 11 44 chr15 59962163 59962253 -41418268 + L2 LINE L2 3183 3269 -3 264 227 45 0 chr15 59963726 59963792 -41416729 - MIR SINE MIR -14 248 180 355 250 26 20 chr15 59963858 59964010 -41416511 - L1MEc LINE L1 -3129 3086 2934 225 0 0 0 chr15 59964244 59964269 -41416252 + (T)n Simple_repeat Simple_repeat 1 25 0 725 194 18 67 chr15 59964405 59964502 -41416019 - L1MEc LINE L1 -3682 2533 2433 2079 133 146 8 chr15 59964502 59964878 -41415643 - MSTA LTR MaLR 0 428 1 725 194 18 67 chr15 59964878 59964922 -41415599 - L1MEc LINE L1 -3782 2433 2388 1660 215 60 58 chr15 59964922 59965225 -41415296 - MLT1C LTR MaLR 0 467 161 1997 116 3 3 chr15 59965225 59965518 -41415003 + AluSg SINE Alu 1 293 -17 1660 215 60 58 chr15 59965518 59965680 -41414841 - MLT1C LTR MaLR -306 161 1 725 194 18 67 chr15 59965680 59965930 -41414591 - L1MEc LINE L1 -3827 2388 2157 264 293 45 38 chr15 59965935 59965951 -41414570 - LTR16C LTR ERVL 0 491 477 279 0 0 0 chr15 59965951 59965982 -41414539 + (CA)n Simple_repeat Simple_repeat 2 32 0 264 293 45 38 chr15 59965982 59966098 -41414423 - LTR16C LTR ERVL -14 477 358 684 262 38 6 chr15 59966321 59966504 -41414017 - MIR SINE MIR -72 190 2 518 301 0 0 chr15 59968086 59968262 -41412259 + (TG)n Simple_repeat Simple_repeat 2 177 0 200 236 0 28 chr15 59968304 59968376 -41412145 + (TCTG)n Simple_repeat Simple_repeat 4 73 0 560 277 51 19 chr15 59968887 59969117 -41411404 - MIR SINE MIR -18 244 3 205 80 0 0 chr15 59969163 59969188 -41411333 + (CA)n Simple_repeat Simple_repeat 1 25 0 609 270 135 26 chr15 59969357 59969587 -41410934 + MIR SINE MIR 8 262 0 784 309 8 4 chr15 59970672 59970908 -41409613 - MIR SINE MIR -18 244 8 792 147 67 13 chr15 59971054 59971204 -41409317 + MER65A LTR ERV1 129 286 -159 186 167 0 0 chr15 59972157 59972193 -41408328 + GA-rich Low_complexity Low_complexity 2 37 0 204 205 0 0 chr15 59974187 59974226 -41406295 + (TTGG)n Simple_repeat Simple_repeat 1 39 0 499 261 176 0 chr15 59974454 59974630 -41405891 + MIR SINE MIR 56 262 0 329 264 64 18 chr15 59974653 59974763 -41405758 - L3 LINE CR1 -113 1464 1350 992 156 131 10 chr15 59974775 59974974 -41405547 - MIR SINE MIR -31 231 9 313 327 28 37 chr15 59975094 59975201 -41405320 - L2 LINE L2 -1 3271 3166 192 148 82 131 chr15 59975200 59975261 -41405260 + L2 LINE L2 3236 3293 -20 * 330 306 183 16 chr15 59975977 59976229 -41404292 + L2 LINE L2 2831 3124 -189 1761 199 45 14 chr15 59976233 59976656 -41403865 - LTR37B LTR ERV1 0 468 33 449 267 72 56 chr15 59976658 59976853 -41403668 + L2 LINE L2 3115 3312 -1 1155 128 95 5 chr15 59976886 59977097 -41403424 + L1MB3 LINE L1 5953 6182 -1 428 299 104 79 chr15 59977110 59977351 -41403170 - MIR SINE MIR -1 261 15 290 271 0 0 chr15 59977392 59977462 -41403059 - L2 LINE L2 -185 3087 3018 3724 142 4 0 chr15 59978220 59978768 -41401753 + MER41D LTR ERV1 1 550 -7 1959 99 0 0 chr15 59979232 59979495 -41401026 + AluSx SINE Alu 40 302 -10 1237 177 45 0 chr15 59979497 59979740 -41400781 + MER45B DNA AcHobo 787 1040 0 2101 141 39 30 chr15 59980173 59980534 -41399987 + THE1B LTR MaLR 1 364 0 278 260 130 0 chr15 59980788 59980888 -41399633 - MIR SINE MIR -112 150 38 270 0 0 0 chr15 59981781 59981811 -41398710 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 366 23 0 0 chr15 59981810 59981853 -41398668 + (TG)n Simple_repeat Simple_repeat 2 44 0 302 353 72 12 chr15 59981872 59982039 -41398482 - MIR SINE MIR -64 198 22 451 284 35 0 chr15 59982205 59982321 -41398200 + L2 LINE L2 3194 3313 0 310 259 187 64 chr15 59982441 59982613 -41397908 - MIR SINE MIR -66 142 9 260 167 33 0 chr15 59982817 59982877 -41397644 + MER4-int LTR ERV1 1112 1173 -5425 3964 138 65 5 chr15 59984347 59985006 -41395515 - MER4D LTR ERV1 0 903 205 2039 119 0 10 chr15 59985288 59985583 -41394938 + AluSc SINE Alu 1 292 -17 29 28 0 0 chr15 59986299 59986335 -41394186 + AT_rich Low_complexity Low_complexity 1 36 0 273 343 19 19 chr15 59986361 59986466 -41394055 + MIR3 SINE MIR 1 105 -103 1704 163 27 24 chr15 59986500 59986795 -41393726 - AluJo SINE Alu -16 296 1 207 0 0 0 chr15 59987611 59987634 -41392887 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2090 59 0 0 chr15 59987750 59988004 -41392517 - L1PA8 LINE L1 -7 6165 5912 408 88 0 0 chr15 59988265 59988322 -41392199 + (CA)n Simple_repeat Simple_repeat 2 58 0 293 225 271 23 chr15 59988625 59988754 -41391767 + MIR SINE MIR 9 169 -93 1611 226 75 25 chr15 59989052 59989490 -41391031 + MLT1C LTR MaLR 6 465 -2 211 314 109 15 chr15 59989492 59989629 -41390892 - MIR3 SINE MIR -55 153 4 469 264 28 33 chr15 59990058 59990240 -41390281 + L1MB8 LINE L1 5998 6178 0 314 308 76 23 chr15 59990240 59990412 -41390109 + L1ME LINE L1 1880 2060 -4480 1598 296 88 25 chr15 59990425 59991391 -41389130 + L1ME LINE L1 4355 5381 -1159 360 0 0 0 chr15 59991453 59991493 -41389028 + (CA)n Simple_repeat Simple_repeat 2 41 0 491 178 141 87 chr15 59991493 59991525 -41388996 + L1MD2 LINE L1 6155 6184 -175 2013 76 7 22 chr15 59991525 59991800 -41388721 + AluY SINE Alu 39 309 -2 491 178 141 87 chr15 59991800 59991952 -41388569 + L1MD2 LINE L1 6184 6349 -10 * 566 263 131 41 chr15 59991951 59992519 -41388002 + L1ME LINE L1 5404 6002 -562 397 132 53 0 chr15 59992621 59992697 -41387824 - L1MB7 LINE L1 -236 5948 5869 2021 152 88 53 chr15 59992703 59993132 -41387389 - L1MB7 LINE L1 -380 5804 5326 1680 167 13 33 chr15 59993132 59993431 -41387090 - AluJo SINE Alu -15 297 5 2021 152 88 53 chr15 59993431 59993554 -41386967 - L1MB7 LINE L1 -858 5326 5209 632 239 132 12 chr15 59993650 59993893 -41386628 - MLT1J LTR MaLR -171 340 69 206 275 14 29 chr15 59993915 59993984 -41386537 - MIR SINE MIR -174 88 21 2203 109 27 0 chr15 59994079 59994372 -41386149 - AluSx SINE Alu -11 301 1 2153 121 13 3 chr15 59995402 59995707 -41384814 - AluSg SINE Alu -2 308 1 583 270 45 40 chr15 59995708 59995930 -41384591 - MARNA DNA Mariner -192 394 172 197 323 0 0 chr15 59996008 59996070 -41384451 + L2 LINE L2 3231 3292 -21 198 71 0 0 chr15 59996430 59996458 -41384063 + (TG)n Simple_repeat Simple_repeat 2 29 0 2395 90 0 0 chr15 59996505 59996806 -41383715 + AluSc SINE Alu 1 301 -8 187 203 95 54 chr15 59999384 59999458 -41381063 + L2 LINE L2 3223 3299 -14 740 158 17 0 chr15 59999991 60000111 -41380410 - MLT1I LTR MaLR 0 409 288 538 225 118 32 chr15 60000162 60000349 -41380172 - MLT1I LTR MaLR -206 203 1 1424 172 157 3 chr15 60001107 60001450 -41379071 - L1M4 LINE L1 -1443 4703 4308 1449 149 9 0 chr15 60001476 60001697 -41378824 - AluSg/x SINE Alu -3 307 85 3753 228 53 20 chr15 60001711 60002092 -41378429 - L1M4 LINE L1 -1828 4318 3951 2337 183 50 60 chr15 60002092 60002710 -41377811 - LTR9 LTR ERV1 0 612 1 3753 228 53 20 chr15 60002710 60003406 -41377115 - L1M4 LINE L1 -2195 3951 3206 185 250 100 75 chr15 60003509 60003629 -41376892 - L2 LINE L2 -4 3268 3146 204 253 71 50 chr15 60003698 60003797 -41376724 + MER91C DNA MER1_type 4 104 -36 1381 112 0 54 chr15 60003836 60004059 -41376462 + MER4D LTR ERV1 1 211 -692 1702 104 9 4 chr15 60004059 60004290 -41376231 + AluSc SINE Alu 1 232 -77 300 36 18 71 chr15 60004424 60004480 -41376041 + L1PA4 LINE L1 6103 6155 0 1560 169 54 37 chr15 60005706 60006001 -41374520 - AluJo SINE Alu -12 300 1 220 279 44 15 chr15 60007021 60007089 -41373432 + L2 LINE L2 3203 3272 0 294 279 0 0 chr15 60008251 60008319 -41372202 - L2 LINE L2 -8 3305 3238 786 270 54 33 chr15 60008658 60009126 -41371395 + LTR33 LTR ERVL 13 520 -1 1196 169 151 11 chr15 60009220 60009504 -41371017 + L1MB7 LINE L1 5852 6175 -9 559 269 6 23 chr15 60009652 60009823 -41370698 - MIR SINE MIR 0 262 95 2284 115 3 0 chr15 60009888 60010200 -41370321 - AluSp SINE Alu 0 313 1 460 228 199 29 chr15 60010209 60010455 -41370066 - L1ME LINE L1 -303 5818 5531 198 0 0 0 chr15 60011211 60011233 -41369288 + (CACAG)n Simple_repeat Simple_repeat 3 24 0 2630 94 11 3 chr15 60011264 60011625 -41368896 - THE1B LTR MaLR 0 364 1 437 278 53 24 chr15 60011711 60011880 -41368641 - MIR3 SINE MIR -14 194 21 7129 34 0 0 chr15 60012445 60013348 -41367173 - L1PA3 LINE L1 -65 6090 5188 194 224 82 0 chr15 60013489 60013538 -41366983 - L2 LINE L2 -15 3257 3205 2578 77 0 0 chr15 60013719 60014030 -41366491 + AluY SINE Alu 1 311 0 1132 116 70 41 chr15 60014276 60014444 -41366077 - L1MA5 LINE L1 -5 6295 6116 1864 130 11 0 chr15 60014444 60014706 -41365815 + AluJb SINE Alu 27 291 -21 1132 116 70 41 chr15 60014706 60014779 -41365742 - L1MA5 LINE L1 -184 6116 6047 205 317 85 5 chr15 60015231 60015335 -41365186 - MIR SINE MIR -65 143 38 1975 221 19 52 chr15 60015419 60015952 -41364569 - L1ME3A LINE L1 -70 6100 5586 315 256 56 44 chr15 60016324 60016414 -41364107 + L2 LINE L2 3168 3258 -14 291 301 122 8 chr15 60017535 60017658 -41362863 - MIR SINE MIR -6 256 120 587 328 20 0 chr15 60017680 60017881 -41362640 + MER115 DNA AcHobo 1 205 -488 631 200 154 15 chr15 60018481 60018676 -41361845 + MIR SINE MIR 35 256 -6 4214 162 23 67 chr15 60018837 60019120 -41361401 - L1MB7 LINE L1 0 6184 5890 2113 114 24 0 chr15 60019120 60019410 -41361111 + AluSx SINE Alu 1 297 -15 4214 162 23 67 chr15 60019410 60020144 -41360377 - L1MB7 LINE L1 -294 5890 5208 1643 138 4 4 chr15 60020320 60020567 -41359954 + AluJb SINE Alu 65 311 -1 1066 240 131 3 chr15 60020667 60020950 -41359571 + MLT1F LTR MaLR 6 324 -218 1066 198 58 10 chr15 60021348 60021555 -41358966 + MER58A DNA MER1_type 1 217 -7 859 185 32 13 chr15 60021772 60021929 -41358592 - MLT1F LTR MaLR -2 540 381 254 365 16 8 chr15 60021968 60022094 -41358427 + MIR3 SINE MIR 9 135 -73 432 252 143 0 chr15 60022141 60022288 -41358233 + MIR SINE MIR 95 262 0 192 250 18 0 chr15 60022574 60022630 -41357891 - MIR3 SINE MIR 0 208 152 183 229 0 42 chr15 60022601 60022649 -41357872 - L3b LINE CR1 -24 1559 1514 * 288 349 187 12 chr15 60022863 60023717 -41356804 + L2 LINE L2 97 1100 -2214 3523 134 4 9 chr15 60024803 60025333 -41355188 - MER1A DNA MER1_type 0 527 1 286 321 124 22 chr15 60025617 60025754 -41354767 - L2 LINE L2 0 3272 3122 1391 187 181 19 chr15 60026968 60027343 -41353178 - MER63B DNA MER1_type 0 436 1 672 253 45 10 chr15 60028090 60028292 -41352229 + MIR SINE MIR 13 221 -41 236 230 95 14 chr15 60028831 60028905 -41351616 + LTR67 LTR ERVL 3 82 -475 333 205 43 60 chr15 60028923 60029008 -41351513 + LTR67 LTR ERVL 433 517 -40 2147 103 0 51 chr15 60029008 60029319 -41351202 + AluSx SINE Alu 17 311 -1 333 205 43 60 chr15 60029319 60029350 -41351171 + LTR67 LTR ERVL 517 547 -10 537 292 115 10 chr15 60029449 60029658 -41350863 + MIR SINE MIR 22 252 -10 621 251 18 6 chr15 60031504 60031671 -41348850 - MIR SINE MIR -76 186 18 21 0 0 0 chr15 60031803 60031824 -41348697 + AT_rich Low_complexity Low_complexity 1 21 0 3366 234 25 20 chr15 60032043 60032889 -41347632 + Zaphod DNA AcHobo 14 863 -3168 1580 193 37 11 chr15 60032931 60033283 -41347238 + MLT1A1 LTR MaLR 5 365 0 349 255 11 11 chr15 60033950 60034044 -41346477 + Zaphod DNA AcHobo 14 107 -3924 422 247 13 100 chr15 60034224 60034376 -41346145 - MIR3 SINE MIR -42 166 30 887 201 6 12 chr15 60034790 60034959 -41345562 - FRAM SINE Alu -8 168 1 570 222 129 16 chr15 60035216 60035410 -41345111 - MER69 DNA AcHobo -727 1799 1584 1266 185 0 5 chr15 60035461 60035683 -41344838 + AluJo SINE Alu 87 307 -5 231 292 32 0 chr15 60035935 60036017 -41344504 - MER69 DNA AcHobo -87 2439 5 413 222 12 0 chr15 60036365 60036446 -41344075 - L2 LINE L2 -2 3311 3230 1881 216 75 37 chr15 60036515 60037033 -41343488 + MLT1F LTR MaLR 5 542 0 348 260 26 0 chr15 60039432 60039509 -41341012 - MIR SINE MIR -70 192 114 345 100 0 0 chr15 60039631 60039681 -41340840 + (CA)n Simple_repeat Simple_repeat 2 51 0 239 326 90 45 chr15 60040008 60040253 -41340268 + L2 LINE L2 2829 3084 -188 314 274 26 26 chr15 60040505 60040618 -41339903 + MIR SINE MIR 96 208 -54 696 235 131 5 chr15 60041742 60041963 -41338558 + L1ME3A LINE L1 5920 6168 -2 615 294 123 0 chr15 60042331 60042535 -41337986 - MIR SINE MIR -16 246 18 312 263 40 0 chr15 60042777 60042853 -41337668 - MIR SINE MIR -67 195 117 24 32 0 0 chr15 60043892 60043923 -41336598 + AT_rich Low_complexity Low_complexity 1 31 0 346 289 120 35 chr15 60044994 60045072 -41335449 + MIR SINE MIR 25 95 -167 1816 123 53 23 chr15 60045072 60045372 -41335149 - AluJb SINE Alu -3 309 1 346 289 120 35 chr15 60045372 60045435 -41335086 + MIR SINE MIR 95 178 -84 222 122 54 27 chr15 60046018 60046092 -41334429 + (TCTCTG)n Simple_repeat Simple_repeat 6 81 0 223 293 131 20 chr15 60046555 60046654 -41333867 + L2 LINE L2 3188 3297 -16 408 305 50 65 chr15 60048262 60048583 -41331938 - L2 LINE L2 -5 3267 2952 1288 240 58 54 chr15 60048723 60049337 -41331184 + L2 LINE L2 2698 3313 0 215 281 85 49 chr15 60049332 60049414 -41331107 - L2 LINE L2 -548 2766 2682 * 314 263 31 38 chr15 60049443 60049603 -41330918 + MER112 DNA MER1_type 14 172 -88 627 197 0 0 chr15 60049615 60049793 -41330728 + (CTATT)n Simple_repeat Simple_repeat 1 178 0 2005 145 30 0 chr15 60049873 60050176 -41330345 + AluSx SINE Alu 1 312 0 2421 110 19 19 chr15 60050676 60051040 -41329481 - THE1B LTR MaLR 0 364 1 193 310 70 20 chr15 60051643 60051679 -41328842 + MIR SINE MIR 16 56 -152 593 283 90 11 chr15 60051679 60051856 -41328665 - MER91A DNA MER1_type -3 193 3 280 236 146 0 chr15 60052012 60052101 -41328420 - L2 LINE L2 -204 3068 2967 510 229 153 0 chr15 60052867 60052999 -41327522 + MER5A DNA MER1_type 4 159 -30 525 307 116 17 chr15 60053039 60053446 -41327075 + L2 LINE L2 2026 2472 -842 2062 155 62 23 chr15 60053525 60053912 -41326609 + MSTA LTR MaLR 1 402 -26 451 230 48 113 chr15 60054268 60054498 -41326023 + L2 LINE L2 3092 3306 -7 460 256 216 88 chr15 60054559 60054666 -41325855 - L2 LINE L2 -453 2861 2769 1905 125 47 0 chr15 60054666 60054945 -41325576 + AluJb SINE Alu 1 292 -20 460 256 216 88 chr15 60054945 60055314 -41325207 - L2 LINE L2 -545 2769 2324 448 343 105 0 chr15 60056863 60057035 -41323486 - MIR SINE MIR -52 210 21 412 366 51 0 chr15 60057702 60057877 -41322644 - MIR SINE MIR -28 234 51 378 236 19 9 chr15 60058094 60058210 -41322311 + L1ME3A LINE L1 5664 5782 -380 856 129 0 0 chr15 60058210 60058326 -41322195 + AluSq/x SINE Alu 1 116 -196 2789 13 0 0 chr15 60059821 60060122 -41320399 - AluYa5 SINE Alu -10 301 1 310 231 93 9 chr15 60060153 60060261 -41320260 + L1ME3A LINE L1 5768 5884 -286 2177 114 58 19 chr15 60060282 60060643 -41319878 - THE1C LTR MaLR 0 375 1 2290 106 10 0 chr15 60061304 60061605 -41318916 + AluSx SINE Alu 1 304 -8 1006 163 59 35 chr15 60062190 60062393 -41318128 + MER3 DNA MER1_type 2 209 0 272 137 20 0 chr15 60062870 60062921 -41317600 + CT-rich Low_complexity Low_complexity 3 54 0 250 348 12 43 chr15 60063091 60063255 -41317266 - MIR3 SINE MIR -3 205 47 556 189 197 0 chr15 60063521 60063648 -41316873 - MER5A DNA MER1_type -7 182 31 1051 242 67 78 chr15 60063705 60064156 -41316365 - LTR16A1 LTR ERVL -6 451 6 1850 143 45 3 chr15 60064353 60064640 -41315881 - AluJb SINE Alu -13 299 1 667 179 51 39 chr15 60065521 60065677 -41314844 - MER5B DNA MER1_type -4 174 17 181 140 0 40 chr15 60065742 60065752 -41314769 + (GGAA)n Simple_repeat Simple_repeat 1 10 -38 2290 109 3 3 chr15 60065752 60066054 -41314467 + AluSx SINE Alu 1 302 -10 181 140 0 40 chr15 60066054 60066093 -41314428 + (GGAA)n Simple_repeat Simple_repeat 10 48 0 186 133 0 0 chr15 60066127 60066157 -41314364 + (AGGGGG)n Simple_repeat Simple_repeat 6 35 0 180 0 0 0 chr15 60066469 60066489 -41314032 + (TTCCC)n Simple_repeat Simple_repeat 5 24 0 253 233 71 117 chr15 60067807 60068159 -41312362 + L2 LINE L2 2937 3272 0 243 231 31 0 chr15 60068238 60068303 -41312218 - MER69 DNA AcHobo 0 2526 2460 771 221 89 47 chr15 60068766 60069024 -41311497 - L1MEc LINE L1 -5993 403 135 300 214 14 29 chr15 60069038 60069108 -41311413 - L1MEc LINE L1 -6293 103 35 1472 233 96 39 chr15 60069110 60069630 -41310891 - Charlie1a DNA MER1_type -888 567 18 372 238 0 12 chr15 60069665 60069745 -41310776 - AluJ/FLAM SINE Alu -223 79 1 22 0 0 0 chr15 60069960 60069982 -41310539 + AT_rich Low_complexity Low_complexity 1 22 0 2320 82 0 11 chr15 60070395 60070700 -41309821 - AluSc SINE Alu 0 302 1 758 250 22 0 chr15 60070841 60071021 -41309500 + MIR SINE MIR 47 230 -32 411 217 124 134 chr15 60071090 60071307 -41309214 + MER58C DNA MER1_type 1 215 0 489 310 75 25 chr15 60072184 60072384 -41308137 - MIR SINE MIR -30 232 23 1272 93 6 0 chr15 60073302 60073464 -41307057 - AluSq SINE Alu -16 297 135 316 271 109 30 chr15 60074631 60074807 -41305714 - HAL1b LINE L1 -1 6120 1187 554 197 7 0 chr15 60074866 60075008 -41305513 + (GTCTG)n Simple_repeat Simple_repeat 4 146 0 370 323 0 0 chr15 60075111 60075235 -41305286 - L1MC4a LINE L1 -1899 5909 5786 642 311 40 14 chr15 60075388 60075461 -41305060 - L1MC4a LINE L1 -1902 4244 4174 1765 157 74 3 chr15 60075461 60075798 -41304723 - MER46B DNA MER2_type 0 236 1 642 311 40 14 chr15 60075798 60076094 -41304427 - L1MC4a LINE L1 -1972 4174 3865 1062 62 55 0 chr15 60076109 60076237 -41304284 - AluSg SINE Alu -129 181 47 342 311 62 36 chr15 60076320 60076513 -41304008 - L1MC4a LINE L1 -2743 3403 3206 418 293 127 0 chr15 60076756 60076913 -41303608 + MIR SINE MIR 86 262 0 213 39 0 0 chr15 60077646 60077672 -41302849 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 271 234 41 47 chr15 60077674 60077776 -41302745 - MIR SINE MIR -102 106 3 263 235 0 0 chr15 60077839 60077890 -41302631 - L2 LINE L2 0 3313 3263 191 265 157 12 chr15 60078233 60078316 -41302205 + L2 LINE L2 3179 3273 -40 425 236 82 60 chr15 60080024 60080186 -41300335 + MIR SINE MIR 34 198 -63 2350 98 10 0 chr15 60080186 60080491 -41300030 + AluSx SINE Alu 1 308 -4 201 255 0 0 chr15 60080621 60080668 -41299853 + (CTA)n Simple_repeat Simple_repeat 3 49 0 746 164 23 23 chr15 60080747 60080875 -41299646 - FLAM_C SINE Alu -10 133 6 603 236 21 37 chr15 60081102 60081299 -41299222 + MIR SINE MIR 68 262 0 321 307 20 10 chr15 60081299 60081400 -41299121 - L1MC4 LINE L1 -1341 6701 6600 284 169 58 17 chr15 60081407 60081579 -41298942 + (TA)n Simple_repeat Simple_repeat 2 180 0 305 330 46 52 chr15 60082266 60082351 -41298170 + MIR SINE MIR 20 104 -158 594 51 71 20 chr15 60082351 60082449 -41298072 + L1MA3 LINE L1 6203 6305 0 305 330 46 52 chr15 60082449 60082536 -41297985 + MIR SINE MIR 104 191 -71 329 249 83 101 chr15 60082636 60082755 -41297766 + MIR SINE MIR 36 99 -109 1563 212 10 3 chr15 60082755 60083052 -41297469 + AluJo SINE Alu 2 300 -12 329 249 83 101 chr15 60083052 60083101 -41297420 + MIR SINE MIR 99 147 -61 363 240 100 0 chr15 60084492 60084592 -41295929 - L2 LINE L2 -4 3309 3200 2024 226 44 12 chr15 60085166 60085684 -41294837 - MLT1F LTR MaLR -6 536 2 249 226 16 0 chr15 60085900 60085962 -41294559 - L1ME4a LINE L1 -99 6022 5960 1334 347 123 14 chr15 60085962 60086882 -41293639 + L2 LINE L2 1640 2659 -655 2208 83 3 0 chr15 60087474 60087762 -41292759 - AluSc SINE Alu -4 305 17 314 331 25 12 chr15 60087952 60088115 -41292406 + MIR SINE MIR 98 262 0 1948 195 21 66 chr15 60089171 60089214 -41291307 + Charlie4a DNA MER1_type 17 60 -1901 3034 114 7 0 chr15 60089214 60089645 -41290876 + MER57B LTR ERV1 1 434 0 1948 195 21 66 chr15 60089645 60090113 -41290408 + Charlie4a DNA MER1_type 60 505 -3 263 254 32 87 chr15 60090186 60090312 -41290209 + MER117 DNA MER1_type 75 193 -4 1081 165 10 31 chr15 60090327 60090521 -41290000 + MER3 DNA MER1_type 12 201 -8 281 284 14 135 chr15 60091602 60091673 -41288848 + MER5A DNA MER1_type 66 114 -75 1902 123 0 4 chr15 60091673 60091980 -41288541 - AluSx SINE Alu 0 317 12 281 284 14 135 chr15 60091980 60092048 -41288473 + MER5A DNA MER1_type 114 189 0 401 267 293 0 chr15 60092174 60092365 -41288156 - MIR SINE MIR 0 262 16 658 184 0 0 chr15 60092365 60092474 -41288047 + MER81 DNA DNA 1 109 -5 475 324 28 6 chr15 60092496 60092678 -41287843 + MIR SINE MIR 44 229 -33 275 299 81 53 chr15 60092746 60093030 -41287491 - L1MEd LINE L1 -4914 1205 914 518 187 89 8 chr15 60094146 60094269 -41286252 - FLAM_C SINE Alu 0 133 1 241 292 108 39 chr15 60094649 60094779 -41285742 - MIR SINE MIR -110 152 14 2216 96 20 0 chr15 60095383 60095686 -41284835 - AluSp SINE Alu -3 310 2 453 262 62 0 chr15 60095784 60095929 -41284592 - L1ME4a LINE L1 -3 6118 5965 219 204 0 20 chr15 60095932 60096058 -41284463 + (TA)n Simple_repeat Simple_repeat 1 123 0 258 274 48 43 chr15 60096336 60096566 -41283955 - L1M4 LINE L1 -1547 4599 4369 248 299 48 5 chr15 60096738 60096925 -41283596 - L1M4 LINE L1 -2147 3999 3805 1613 155 45 24 chr15 60096945 60097236 -41283285 - AluJo SINE Alu -15 297 1 231 227 0 0 chr15 60097389 60097455 -41283066 + A-rich Low_complexity Low_complexity 5 70 0 383 168 61 92 chr15 60097472 60097603 -41282918 - MER103 DNA DNA -19 147 21 180 279 98 0 chr15 60098544 60098605 -41281916 - L2 LINE L2 -242 3030 2964 325 230 40 50 chr15 60098633 60098733 -41281788 - MIR SINE MIR -46 216 118 2058 80 4 7 chr15 60098777 60099052 -41281469 + AluSg SINE Alu 27 300 -10 200 368 29 0 chr15 60099107 60099175 -41281346 - L2 LINE L2 -52 3220 3151 383 217 92 26 chr15 60099351 60099503 -41281018 + MER5B DNA MER1_type 1 162 -16 192 276 41 71 chr15 60100667 60100765 -41279756 + MIR SINE MIR 101 195 -67 893 217 42 0 chr15 60100915 60101104 -41279417 + MIR SINE MIR 20 216 -46 782 201 0 21 chr15 60101109 60101373 -41279148 + FLAM_A SINE Alu 1 261 0 185 43 0 0 chr15 60101381 60101404 -41279117 + MIR SINE MIR 226 248 -14 185 268 0 0 chr15 60101404 60101422 -41279099 + L2 LINE L2 3271 3311 -2 414 297 36 42 chr15 60101498 60101663 -41278858 - MER5A DNA MER1_type -5 184 21 1748 178 0 0 chr15 60102327 60102619 -41277902 + AluJb SINE Alu 1 292 -20 195 321 79 21 chr15 60103734 60103874 -41276647 + L2 LINE L2 2196 2343 -971 * 554 269 125 19 chr15 60103869 60104077 -41276444 + MIR SINE MIR 19 248 -14 308 330 11 0 chr15 60104200 60104294 -41276227 - MIR SINE MIR -63 145 51 2125 242 21 35 chr15 60104452 60105015 -41275506 - LTR60 LTR ERV1 -31 555 1 379 282 36 18 chr15 60105100 60105210 -41275311 - MER5A DNA MER1_type -23 166 55 480 291 44 30 chr15 60106245 60106498 -41274023 + MIR3 SINE MIR 4 262 0 403 269 98 52 chr15 60106563 60106791 -41273730 + L1M4c LINE L1 2189 2443 -3939 400 136 0 30 chr15 60106798 60106864 -41273657 - L2 LINE L2 0 3313 3250 335 285 117 30 chr15 60106866 60107560 -41272961 + L1M4c LINE L1 2449 3202 -3180 737 107 0 0 chr15 60107716 60107819 -41272702 - AluSp/q SINE Alu -16 297 195 1890 114 0 4 chr15 60108130 60108449 -41272072 - AluSx SINE Alu 0 332 15 216 158 0 0 chr15 60108731 60108769 -41271752 + (TTA)n Simple_repeat Simple_repeat 2 39 0 360 0 0 0 chr15 60108834 60108874 -41271647 + (TG)n Simple_repeat Simple_repeat 2 41 0 422 197 217 28 chr15 60109325 60109490 -41271031 + MIR SINE MIR 2 192 -54 318 279 197 8 chr15 60110162 60110406 -41270115 - L1ME4a LINE L1 -120 6001 5712 207 0 0 0 chr15 60110449 60110472 -41270049 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 1097 154 0 6 chr15 60110491 60110666 -41269855 - AluJb SINE Alu -23 289 116 2051 79 8 8 chr15 60160839 60161105 -41219416 + AluSx SINE Alu 31 296 -16 202 323 11 21 chr15 60161460 60161553 -41218968 - MIR SINE MIR -73 189 98 875 118 7 30 chr15 60161555 60161690 -41218831 + FLAM_C SINE Alu 1 132 -1 2681 151 74 35 chr15 60161751 60162240 -41218281 + LTR12 LTR ERV1 1 508 -206 341 209 47 0 chr15 60163047 60163133 -41217388 + LTR67 LTR ERVL 468 557 0 222 308 113 29 chr15 60163216 60163500 -41217021 + L2 LINE L2 2913 3304 -9 2296 109 0 0 chr15 60163812 60164115 -41216406 - AluSg1 SINE Alu -6 303 1 341 279 150 14 chr15 60164136 60164283 -41216238 + MIR3 SINE MIR 16 182 -26 186 43 0 0 chr15 60164353 60164376 -41216145 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 247 224 0 0 chr15 60164959 60165008 -41215513 + L1MA9 LINE L1 6213 6261 -51 2324 67 0 17 chr15 60165244 60165544 -41214977 - AluY SINE Alu -16 295 1 197 341 119 58 chr15 60166030 60166256 -41214265 + L2 LINE L2 3009 3248 -24 22 0 0 0 chr15 60166620 60166642 -41213879 + AT_rich Low_complexity Low_complexity 1 22 0 2145 102 0 11 chr15 60166650 60166967 -41213554 + AluSx SINE Alu 1 314 0 2197 105 7 0 chr15 60167544 60167840 -41212681 + AluSx SINE Alu 1 298 -14 284 331 115 31 chr15 60167896 60168286 -41212235 + L2 LINE L2 2475 2897 -417 180 200 36 55 chr15 60168512 60168567 -41211954 + L2 LINE L2 3213 3266 -6 2399 176 135 2 chr15 60169282 60169725 -41210796 + MLT1D LTR MaLR 4 505 0 266 305 85 0 chr15 60170025 60170107 -41210414 + MIR SINE MIR 23 111 -151 1257 204 184 14 chr15 60170393 60170751 -41209770 - LTR16C LTR ERVL 0 491 73 809 120 17 8 chr15 60170967 60171084 -41209437 - FLAM_C SINE Alu -24 119 2 480 176 185 19 chr15 60171105 60171213 -41209308 - FLAM_A SINE Alu -7 126 1 2222 131 0 0 chr15 60171217 60171530 -41208991 - AluSq SINE Alu 0 313 1 1843 116 34 55 chr15 60171540 60171833 -41208688 - AluSx SINE Alu -25 287 1 2069 123 10 23 chr15 60171835 60172143 -41208378 - AluSx SINE Alu -8 304 1 1651 133 98 0 chr15 60172602 60172857 -41207664 - AluJb SINE Alu -32 280 1 1697 137 35 3 chr15 60173134 60173418 -41207103 + L1MA2 LINE L1 6012 6304 0 257 288 27 0 chr15 60173801 60173874 -41206647 + MLT1J LTR MaLR 99 173 -338 202 132 26 0 chr15 60174455 60174493 -41206028 + A-rich Low_complexity Low_complexity 2 40 0 1877 155 21 3 chr15 60174577 60174868 -41205653 + AluJo SINE Alu 14 309 -3 1427 168 27 12 chr15 60175167 60175423 -41205098 - AluJb SINE Alu -14 298 39 21 0 0 0 chr15 60175950 60175971 -41204550 + AT_rich Low_complexity Low_complexity 1 21 0 281 154 0 58 chr15 60175989 60176041 -41204480 + MER112 DNA MER1_type 2 50 -210 370 0 0 39 chr15 60176061 60176113 -41204408 + (CA)n Simple_repeat Simple_repeat 2 51 0 673 276 130 45 chr15 60176153 60176616 -41203905 + MLT1J LTR MaLR 2 503 -8 467 245 0 27 chr15 60176621 60176768 -41203753 + MER112 DNA MER1_type 111 253 -7 1623 163 32 18 chr15 60177290 60177572 -41202949 - AluJo SINE Alu -26 286 1 21 0 0 0 chr15 60177644 60177665 -41202856 + AT_rich Low_complexity Low_complexity 1 21 0 1790 178 0 10 chr15 60178080 60178373 -41202148 - AluJb SINE Alu -22 290 1 2181 75 0 0 chr15 60178616 60178883 -41201638 - AluSp SINE Alu -46 267 1 1429 141 3 90 chr15 60179086 60179399 -41201122 - AluJo SINE Alu 0 308 21 2060 126 7 0 chr15 60179572 60179857 -41200664 - AluSx SINE Alu -25 287 1 1498 174 14 44 chr15 60181730 60182023 -41198498 + AluJo SINE Alu 2 285 -27 2044 120 7 0 chr15 60182142 60182457 -41198064 - AluSx SINE Alu 0 317 1 1941 165 76 33 chr15 60183415 60183639 -41196882 - L1MC4 LINE L1 -4 8038 7788 2241 108 3 13 chr15 60183639 60183954 -41196567 + AluSx SINE Alu 1 312 0 1941 165 76 33 chr15 60183954 60184124 -41196397 - L1MC4 LINE L1 -254 7788 7627 * 2094 158 50 17 chr15 60184123 60184431 -41196090 - L1MC4 LINE L1 -619 7423 7096 2114 107 10 3 chr15 60184431 60184721 -41195800 + AluSx SINE Alu 1 292 -20 2094 158 50 17 chr15 60184721 60184829 -41195692 - L1MC4 LINE L1 -946 7096 6993 237 270 146 0 chr15 60184928 60185017 -41195504 - L2 LINE L2 -15 3298 3197 1956 157 0 23 chr15 60185082 60185388 -41195133 + AluJo SINE Alu 1 299 -13 1713 181 7 0 chr15 60185465 60185752 -41194769 - L1PA16 LINE L1 -2 6164 5876 1510 167 14 37 chr15 60185881 60186175 -41194346 + AluJb SINE Alu 5 291 -21 784 163 16 0 chr15 60186715 60186838 -41193683 - FLAM_A SINE Alu -8 125 1 2043 138 0 3 chr15 60188184 60188496 -41192025 - AluSx SINE Alu -1 311 1 1640 231 71 32 chr15 60188587 60189025 -41191496 - MLT1F LTR MaLR -87 455 1 649 256 73 106 chr15 60189025 60189450 -41191071 - MLT1F-int LTR MaLR 0 1371 961 822 149 8 0 chr15 60189471 60189605 -41190916 - AluJb SINE Alu -176 136 2 2305 97 0 0 chr15 60189630 60189941 -41190580 - AluSx SINE Alu -1 311 1 227 267 53 13 chr15 60190175 60190250 -41190271 - MLT1F-int LTR MaLR -576 795 718 446 274 68 0 chr15 60190470 60190616 -41189905 - MLT1F-int LTR MaLR -765 606 451 1025 112 53 6 chr15 60190616 60190786 -41189735 + MSTB LTR MaLR 211 388 -38 192 111 0 0 chr15 60190786 60190822 -41189699 + (A)n Simple_repeat Simple_repeat 1 36 0 378 320 33 4 chr15 60190832 60191102 -41189419 - MLT1F-int LTR MaLR -918 453 61 183 80 0 0 chr15 60191103 60191128 -41189393 + (CA)n Simple_repeat Simple_repeat 2 26 0 1536 145 51 30 chr15 60191132 60191428 -41189093 - L1MB7 LINE L1 -19 6165 5864 2245 188 87 38 chr15 60191430 60191935 -41188586 - MLT1F LTR MaLR -3 539 10 760 232 60 0 chr15 60192359 60192510 -41188011 - FRAM SINE Alu -15 161 2 1679 178 28 0 chr15 60192524 60192830 -41187691 - AluJb SINE Alu 0 312 1 1265 263 104 41 chr15 60192842 60193332 -41187189 + MLT1H LTR MaLR 22 542 -7 2070 116 10 0 chr15 60193457 60193751 -41186770 - AluSq SINE Alu -16 297 1 334 264 280 10 chr15 60193754 60193947 -41186574 - MIR SINE MIR -7 255 11 1759 152 3 7 chr15 60193980 60194269 -41186252 + AluJb SINE Alu 8 295 -17 3942 178 45 52 chr15 60195572 60195802 -41184719 - Charlie1 DNA MER1_type -15 2746 2516 10510 28 4 111 chr15 60195802 60197332 -41183189 + SVA Other Other 10 1376 -10 3942 178 45 52 chr15 60197332 60197566 -41182955 - Charlie1 DNA MER1_type -245 2516 2282 1981 130 3 0 chr15 60197566 60197859 -41182662 - AluSq SINE Alu -19 294 1 3942 178 45 52 chr15 60197859 60197960 -41182561 - Charlie1 DNA MER1_type -479 2282 2182 1886 126 0 0 chr15 60197960 60198267 -41182254 - AluJb SINE Alu 0 318 12 3942 178 45 52 chr15 60198267 60198459 -41182062 - Charlie1 DNA MER1_type -579 2182 1990 1463 194 23 16 chr15 60198459 60198768 -41181753 + AluJb SINE Alu 1 311 -1 3942 178 45 52 chr15 60198768 60198981 -41181540 - Charlie1 DNA MER1_type -771 1990 1778 7666 21 15 0 chr15 60198998 60200334 -41180187 - L1PA3 LINE L1 -3 6152 4802 2020 88 0 34 chr15 60200351 60200647 -41179874 + AluY SINE Alu 1 286 -25 180 179 39 0 chr15 60200648 60200726 -41179795 + (TA)n Simple_repeat Simple_repeat 1 81 0 * 295 119 17 17 chr15 60200723 60200782 -41179739 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 263 194 81 0 chr15 60200782 60200844 -41179677 - AluS SINE Alu -236 67 1 671 134 0 0 chr15 60201895 60201992 -41178529 + FLAM_A SINE Alu 35 131 -11 345 256 81 38 chr15 60202060 60202220 -41178301 + MLT1B LTR MaLR 1 167 -198 574 226 43 43 chr15 60202279 60202443 -41178078 + MLT1B LTR MaLR 212 375 -15 1155 98 15 5 chr15 60202643 60202810 -41177711 - LTR12 LTR ERV1 0 714 142 8130 55 8 7 chr15 60202943 60203949 -41176572 + LTR13 LTR ERVK 1 1007 0 1205 159 156 33 chr15 60204104 60204406 -41176115 + MER44D DNA MER2_type 1 609 0 22 56 0 0 chr15 60205284 60205320 -41175201 + GC_rich Low_complexity Low_complexity 1 36 0 206 146 0 18 chr15 60205332 60205387 -41175134 + (CCCCAG)n Simple_repeat Simple_repeat 3 56 0 267 236 0 28 chr15 60205658 60205730 -41174791 + T-rich Low_complexity Low_complexity 4 73 0 258 301 214 18 chr15 60205733 60205962 -41174559 + L2 LINE L2 3015 3288 -25 387 60 0 0 chr15 60206449 60206499 -41174022 + (CA)n Simple_repeat Simple_repeat 2 51 0 3227 136 6 28 chr15 60207041 60207314 -41173207 - LOR1a LTR ERV1 0 497 239 1968 120 54 42 chr15 60207314 60207647 -41172874 + MER1B DNA MER1_type 1 337 0 3227 136 6 28 chr15 60207647 60207881 -41172640 - LOR1a LTR ERV1 -258 239 1 1989 142 39 70 chr15 60208066 60208431 -41172090 - LTR56 LTR ERV1 0 445 95 2028 138 0 0 chr15 60208431 60208727 -41171794 - AluJb SINE Alu -5 307 12 1989 142 39 70 chr15 60208727 60208820 -41171701 - LTR56 LTR ERV1 -350 95 1 2211 96 0 3 chr15 60209003 60209305 -41171216 + AluSc SINE Alu 1 301 -8 382 232 42 0 chr15 60209578 60209746 -41170775 + (TA)n Simple_repeat Simple_repeat 2 176 0 2057 171 59 13 chr15 60209899 60210290 -41170231 - MER87 LTR ERV1 0 541 133 1585 150 49 7 chr15 60210290 60210577 -41169944 + AluJb SINE Alu 1 299 -13 493 290 61 90 chr15 60210638 60210991 -41169530 - L2 LINE L2 -80 3233 2892 2174 112 0 0 chr15 60210991 60211287 -41169234 + AluSx SINE Alu 1 296 -16 493 290 61 90 chr15 60211287 60211343 -41169178 - L2 LINE L2 -421 2892 2836 1388 216 75 57 chr15 60211471 60211834 -41168687 + L1M4 LINE L1 3860 4236 -1910 2118 128 0 3 chr15 60211834 60212139 -41168382 + AluSx SINE Alu 1 304 -8 1388 216 75 57 chr15 60212139 60212285 -41168236 + L1M4 LINE L1 4236 4378 -1768 1992 151 0 0 chr15 60212289 60212588 -41167933 + AluJb SINE Alu 1 299 -13 427 325 115 56 chr15 60212764 60212941 -41167580 - L1ME1 LINE L1 -284 5882 5717 2017 116 7 0 chr15 60212941 60213233 -41167288 + AluSx SINE Alu 1 294 -18 427 325 115 56 chr15 60213233 60213498 -41167023 - L1ME1 LINE L1 -449 5717 5414 370 287 52 17 chr15 60214424 60214539 -41165982 - MIR SINE MIR -73 189 71 547 273 58 12 chr15 60214991 60215163 -41165358 + MIR SINE MIR 83 262 0 440 252 120 28 chr15 60215290 60215495 -41165026 + MIR SINE MIR 11 220 -42 2290 71 3 0 chr15 60215585 60215879 -41164642 + AluSx SINE Alu 4 298 -14 248 221 35 58 chr15 60215879 60215965 -41164556 - L1ME4a LINE L1 -62 6059 5976 255 236 20 31 chr15 60216010 60216117 -41164404 - MIR SINE MIR -102 106 2 21 57 0 0 chr15 60218513 60218548 -41161973 + AT_rich Low_complexity Low_complexity 1 35 0 226 330 85 25 chr15 60219096 60219214 -41161307 - L3 LINE CR1 -74 1503 1379 1506 173 42 3 chr15 60219235 60219346 -41161175 + AluJo SINE Alu 12 117 -195 264 100 0 0 chr15 60219346 60219386 -41161135 + (CTA)n Simple_repeat Simple_repeat 2 41 0 1506 173 42 3 chr15 60219386 60219557 -41160964 + AluJo SINE Alu 117 305 -7 1134 194 68 23 chr15 60219897 60220160 -41160361 - ORSL DNA AcHobo 0 275 1 2343 97 0 0 chr15 60220418 60220727 -41159794 - AluSx SINE Alu -3 309 1 1471 39 0 0 chr15 60220846 60221024 -41159497 - AluY SINE Alu -6 305 128 281 268 170 39 chr15 60221238 60221391 -41159130 + MIR3 SINE MIR 36 208 0 1878 138 0 14 chr15 60222265 60222604 -41157917 + AluJb SINE Alu 1 312 0 1938 188 0 9 chr15 60222888 60223223 -41157298 - MER58B DNA MER1_type -3 338 7 228 204 167 0 chr15 60223619 60223673 -41156848 - L2 LINE L2 0 3272 3210 457 258 84 13 chr15 60223836 60223883 -41156638 - MER96 DNA MER1_type? -6 169 127 1765 168 0 19 chr15 60223883 60224199 -41156322 + AluJo SINE Alu 1 310 -2 2318 70 3 3 chr15 60224202 60224504 -41156017 + AluY SINE Alu 1 302 -9 457 258 84 13 chr15 60224504 60224607 -41155914 - MER96 DNA MER1_type? -49 126 4 258 237 23 0 chr15 60225161 60225268 -41155253 + MER5A DNA MER1_type 4 113 -76 225 94 0 0 chr15 60225824 60225856 -41154665 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1562 177 18 0 chr15 60225860 60226137 -41154384 - AluJb SINE Alu -30 282 1 7924 57 1 0 chr15 60226144 60227109 -41153412 + LTR5 LTR ERVK 1 966 -3 1303 156 7 78 chr15 60227118 60227425 -41153096 - AluJo SINE Alu 0 312 28 191 182 0 0 chr15 60227461 60227494 -41153027 - MIR SINE MIR -67 141 109 259 361 7 13 chr15 60227495 60227592 -41152929 - MIR SINE MIR -76 132 32 1800 123 0 34 chr15 60227935 60228227 -41152294 - AluJb SINE Alu -19 293 12 687 311 37 17 chr15 60229527 60229768 -41150753 - MIR SINE MIR -15 247 2 2088 105 23 0 chr15 60230049 60230355 -41150166 - AluSp SINE Alu 0 313 1 225 0 0 0 chr15 60231623 60231648 -41148873 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 196 260 41 41 chr15 60232801 60232874 -41147647 + MIR SINE MIR 43 115 -147 268 281 156 69 chr15 60233965 60234125 -41146396 + MIR3 SINE MIR 14 187 -21 1983 96 3 75 chr15 60234879 60235228 -41145293 + AluSx SINE Alu 1 326 0 1848 153 0 14 chr15 60236132 60236427 -41144094 - AluSx SINE Alu -21 291 1 361 294 103 22 chr15 60236452 60236636 -41143885 - MIR SINE MIR -29 233 35 219 69 0 0 chr15 60238285 60238314 -41142207 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 301 194 45 0 chr15 60239174 60239241 -41141280 - L1MC4 LINE L1 -1333 6709 6640 1492 129 4 17 chr15 60240083 60240315 -41140206 + AluJb SINE Alu 73 301 -11 2001 187 46 35 chr15 60240315 60240749 -41139772 + L1MB7 LINE L1 5730 6168 -16 2529 64 0 10 chr15 60240849 60241160 -41139361 - AluY SINE Alu -3 308 1 2122 134 0 0 chr15 60241462 60241754 -41138767 - AluSx SINE Alu -20 292 1 1618 179 101 80 chr15 60241944 60242229 -41138292 + MER119 DNA MER1_type 99 399 -184 1391 157 88 8 chr15 60242229 60242490 -41138031 + AluJo SINE Alu 1 282 -30 1618 179 101 80 chr15 60242490 60242679 -41137842 + MER119 DNA MER1_type 399 583 0 2448 78 3 7 chr15 60242710 60243016 -41137505 - AluSp SINE Alu -8 305 1 312 102 41 0 chr15 60243579 60243628 -41136893 - L1PA7 LINE L1 -2 6152 6102 1231 139 0 31 chr15 60243769 60243963 -41136558 + AluSg/x SINE Alu 110 297 -13 2077 98 4 0 chr15 60245229 60245504 -41135017 + AluY SINE Alu 1 276 -35 219 103 0 0 chr15 60245505 60245544 -41134977 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 955 193 141 36 chr15 60246062 60246339 -41134182 - MER33 DNA MER1_type -25 299 1 28 91 0 0 chr15 60247964 60248041 -41132480 + GC_rich Low_complexity Low_complexity 1 77 0 1499 174 15 11 chr15 60248407 60248672 -41131849 - AluJo SINE Alu -27 285 20 490 103 26 0 chr15 60248789 60248867 -41131654 - Alu SINE Alu -3 309 230 1102 79 0 7 chr15 60248967 60249107 -41131414 + AluSq SINE Alu 135 273 -40 198 0 0 0 chr15 60249107 60249129 -41131392 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 2347 45 7 0 chr15 60249277 60249563 -41130958 - L1PA7 LINE L1 0 6154 5867 1876 170 0 3 chr15 60251357 60251657 -41128864 - AluJo SINE Alu -13 299 1 251 154 0 19 chr15 60252554 60252606 -41127915 + CT-rich Low_complexity Low_complexity 3 53 0 2344 92 0 0 chr15 60253325 60253620 -41126901 + AluSg SINE Alu 1 295 -15 1960 117 0 0 chr15 60253804 60254077 -41126444 - AluSx SINE Alu 0 312 40 264 32 0 0 chr15 60254077 60254108 -41126413 - U2 snRNA snRNA -157 31 1 * 386 169 0 0 chr15 60254104 60254163 -41126358 - AluSx SINE Alu -244 59 1 180 0 0 0 chr15 60254967 60254987 -41125534 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 2268 82 3 13 chr15 60254988 60255293 -41125228 + AluSx SINE Alu 1 302 -10 2251 91 7 0 chr15 60255617 60255915 -41124606 - AluSg SINE Alu -10 300 1 2323 84 0 0 chr15 60255938 60256223 -41124298 - AluSc SINE Alu -23 286 2 21 0 0 0 chr15 60256711 60256732 -41123789 + AT_rich Low_complexity Low_complexity 1 21 0 913 198 6 0 chr15 60257617 60257774 -41122747 + FAM SINE Alu 1 158 -17 475 278 77 6 chr15 60258223 60258392 -41122129 - MIR3 SINE MIR -11 197 17 2078 144 0 0 chr15 60258750 60259049 -41121472 + AluSx SINE Alu 1 299 -13 419 285 122 20 chr15 60259131 60259377 -41121144 + MLT1K LTR MaLR 103 373 -215 1893 131 116 44 chr15 60259932 60260159 -41120362 + MER1A DNA MER1_type 1 263 -2439 2227 113 7 0 chr15 60260159 60260460 -41120061 + AluSx SINE Alu 1 303 -9 1893 131 116 44 chr15 60260460 60260576 -41119945 + MER1A DNA MER1_type 263 369 -160 387 321 57 25 chr15 60261384 60261543 -41118978 - L2 LINE L2 0 3272 3109 2383 100 0 0 chr15 60261804 60262105 -41118416 + AluSq SINE Alu 1 301 -12 274 267 27 13 chr15 60262366 60262441 -41118080 + MLT1K LTR MaLR 340 415 -173 2615 44 0 0 chr15 60263455 60263752 -41116769 - AluY SINE Alu -14 297 1 216 0 0 0 chr15 60264030 60264054 -41116467 + (CAG)n Simple_repeat Simple_repeat 2 25 0 732 184 0 0 chr15 60264375 60264500 -41116021 - Charlie1 DNA MER1_type 0 2761 2637 241 287 23 0 chr15 60264586 60264673 -41115848 + MLT1K LTR MaLR 500 588 0 292 304 130 6 chr15 60264829 60264990 -41115531 - MIR SINE MIR -46 216 36 255 282 8 68 chr15 60265988 60266254 -41114267 + G-rich Low_complexity Low_complexity 1 249 0 984 119 8 0 chr15 60269011 60269145 -41111376 + AluJo SINE Alu 1 135 -177 1679 158 11 25 chr15 60269152 60269436 -41111085 + AluJo SINE Alu 10 289 -23 2306 77 3 3 chr15 60269729 60270042 -41110479 + AluY SINE Alu 1 313 0 209 331 66 26 chr15 60270328 60270479 -41110042 - MIR3 SINE MIR -6 202 46 864 214 104 5 chr15 60270928 60271120 -41109401 + MER58C DNA MER1_type 1 211 -4 279 250 18 0 chr15 60272396 60272452 -41108069 - Charlie8 DNA MER1_type -2354 63 7 234 273 82 27 chr15 60272626 60272736 -41107785 + MIR SINE MIR 66 181 -81 29 28 0 0 chr15 60273350 60273386 -41107135 + AT_rich Low_complexity Low_complexity 1 36 0 1832 184 10 0 chr15 60273531 60273869 -41106652 - AluSx SINE Alu 0 341 1 555 233 18 37 chr15 60273946 60274109 -41106412 + MER117 DNA MER1_type 30 189 -8 21 0 0 0 chr15 60275782 60275803 -41104718 + AT_rich Low_complexity Low_complexity 1 21 0 1014 130 13 7 chr15 60275926 60276080 -41104441 - AluJb SINE Alu -157 155 1 743 168 0 8 chr15 60276705 60276836 -41103685 + FLAM_C SINE Alu 1 130 -3 209 270 48 0 chr15 60276923 60276986 -41103535 - MIR SINE MIR -115 147 82 2474 36 0 78 chr15 60278170 60278501 -41102020 + AluY SINE Alu 1 305 -6 242 348 0 35 chr15 60279310 60279425 -41101096 + MIR3 SINE MIR 77 187 -21 635 236 160 27 chr15 60279804 60280029 -41100492 - MIR SINE MIR 0 262 8 1862 138 6 66 chr15 60281075 60281215 -41099306 + AluJo SINE Alu 1 148 -164 2190 95 3 11 chr15 60281215 60281539 -41098982 + AluSx SINE Alu 1 322 0 1862 138 6 66 chr15 60281539 60281716 -41098805 + AluJo SINE Alu 148 301 -11 197 261 234 9 chr15 60282141 60282252 -41098269 + L2 LINE L2 3136 3271 -1 266 309 123 37 chr15 60282786 60283332 -41097189 + L2 LINE L2 1570 2162 -1152 333 366 9 0 chr15 60283394 60283506 -41097015 + L2 LINE L2 3134 3246 -26 2362 81 3 23 chr15 60283753 60284063 -41096458 - AluSc SINE Alu -5 304 1 1917 112 11 4 chr15 60285093 60285361 -41095160 - AluSx SINE Alu -13 299 30 1074 135 70 11 chr15 60285514 60285699 -41094822 - AluJb SINE Alu -106 206 11 198 272 97 88 chr15 60286292 60286406 -41094115 + L2 LINE L2 3158 3272 0 202 284 45 0 chr15 60286652 60286719 -41093802 - L3 LINE CR1 -18 1559 1490 2272 100 7 3 chr15 60287056 60287355 -41093166 - AluSx SINE Alu -12 300 1 2147 85 58 10 chr15 60287969 60288263 -41092258 + AluSx SINE Alu 1 308 -4 1877 258 91 44 chr15 60289089 60289331 -41091190 + MER115 DNA AcHobo 8 237 -456 2177 129 3 3 chr15 60289339 60289649 -41090872 - AluSx SINE Alu -2 310 1 2096 117 45 0 chr15 60289649 60289939 -41090582 - AluSx SINE Alu -9 303 1 912 122 0 14 chr15 60289649 60289779 -41090742 - AluSg/x SINE Alu -9 303 174 1877 258 91 44 chr15 60289779 60290326 -41090195 + MER115 DNA AcHobo 237 676 -17 378 173 0 0 chr15 60290516 60290591 -41089930 + (TG)n Simple_repeat Simple_repeat 2 76 0 238 190 76 38 chr15 60290823 60290902 -41089619 + MIR SINE MIR 90 171 -91 2248 113 138 43 chr15 60291534 60291754 -41088767 + MSTA LTR MaLR 1 199 -229 2244 109 0 0 chr15 60291754 60292058 -41088463 + AluY SINE Alu 1 304 -7 2248 113 138 43 chr15 60292058 60292228 -41088293 + MSTA LTR MaLR 199 428 0 973 203 14 14 chr15 60292745 60292952 -41087569 + MIR SINE MIR 37 243 -19 210 143 0 0 chr15 60292960 60292995 -41087526 + (CACCAT)n Simple_repeat Simple_repeat 4 38 0 2078 94 65 0 chr15 60294608 60294884 -41085637 - AluSg SINE Alu -15 295 2 473 127 13 0 chr15 60295011 60295090 -41085431 - L1MB8 LINE L1 0 6178 6099 2216 88 0 7 chr15 60295094 60295417 -41085104 + AluSc SINE Alu 5 309 0 886 302 155 36 chr15 60295434 60295817 -41084704 + L3 LINE CR1 828 1293 -284 1812 177 3 3 chr15 60295817 60296117 -41084404 - AluJo SINE Alu -12 300 1 886 302 155 36 chr15 60296117 60296263 -41084258 + L3 LINE CR1 1293 1420 -157 928 132 0 22 chr15 60296284 60296420 -41084101 - FLAM_C SINE Alu 0 133 1 564 215 0 0 chr15 60296752 60296859 -41083662 - MER63 DNA MER1_type -273 789 683 2016 97 0 74 chr15 60297034 60297345 -41083176 - AluSx SINE Alu -14 298 11 503 248 206 0 chr15 60297893 60298034 -41082487 - MER5B DNA MER1_type 0 178 9 251 222 121 40 chr15 60298226 60298325 -41082196 - MIR SINE MIR -52 210 104 1639 181 13 19 chr15 60298625 60298934 -41081587 - AluJo SINE Alu -2 310 4 1991 96 75 4 chr15 60299231 60299511 -41081010 + AluSx SINE Alu 1 300 -12 500 237 59 0 chr15 60300041 60300159 -41080362 - MER5B DNA MER1_type -10 168 44 365 231 264 0 chr15 60300401 60300522 -41079999 - MER5A DNA MER1_type 0 189 37 313 203 16 0 chr15 60300763 60300827 -41079694 - LTR33 LTR ERVL -7 514 450 2416 88 0 3 chr15 60301111 60301417 -41079104 + AluSx SINE Alu 1 305 -7 1231 118 65 5 chr15 60301522 60301708 -41078813 + AluSc SINE Alu 96 292 -17 183 200 0 29 chr15 60302015 60302050 -41078471 - MIR SINE MIR -136 72 39 653 187 175 12 chr15 60302408 60302574 -41077947 + AluJo SINE Alu 119 311 -1 878 274 46 20 chr15 60302596 60302920 -41077601 + L1ME4a LINE L1 5414 5732 -389 2000 180 72 48 chr15 60302987 60303054 -41077467 - MLT1D LTR MaLR 0 505 441 2014 99 0 4 chr15 60303054 60303353 -41077168 - AluSx SINE Alu 0 318 21 2000 180 72 48 chr15 60303353 60303768 -41076753 - MLT1D LTR MaLR -64 441 10 313 270 104 51 chr15 60303830 60303961 -41076560 + L1ME4a LINE L1 5708 5831 -290 1453 139 0 0 chr15 60303961 60304170 -41076351 + AluJb SINE Alu 85 293 -19 313 270 104 51 chr15 60304170 60304431 -41076090 + L1ME4a LINE L1 5831 6121 0 501 79 0 0 chr15 60304455 60304518 -41076003 + Alu SINE Alu 2 64 -245 1318 158 0 58 chr15 60304619 60304790 -41075731 - MER7C DNA MER2_type -2801 227 48 2242 107 0 10 chr15 60304790 60305089 -41075432 + AluSx SINE Alu 1 296 -16 204 40 0 0 chr15 60305089 60305114 -41075407 + (CAT)n Simple_repeat Simple_repeat 2 26 0 1318 158 0 58 chr15 60305114 60305182 -41075339 - MER7C DNA MER2_type -2978 50 1 816 263 70 103 chr15 60305182 60305607 -41074914 - LTR33A LTR ERVL -44 479 69 188 231 0 0 chr15 60306855 60306894 -41073627 + L2 LINE L2 3265 3303 -10 479 184 48 48 chr15 60307959 60308084 -41072437 + MER112 DNA MER1_type 1 125 -135 362 189 40 0 chr15 60308176 60308250 -41072271 + MER112 DNA MER1_type 178 254 -6 1770 124 11 4 chr15 60308305 60308572 -41071949 - AluSc SINE Alu 0 309 41 261 0 0 0 chr15 60308597 60308626 -41071895 + (A)n Simple_repeat Simple_repeat 1 29 0 453 289 108 5 chr15 60309259 60309453 -41071068 - MIR SINE MIR 0 262 49 2345 87 3 0 chr15 60310753 60311041 -41069480 - AluSg SINE Alu -12 298 10 1037 150 161 21 chr15 60311188 60311381 -41069140 + MER7C DNA MER2_type 392 611 -1 257 128 64 21 chr15 60311456 60311503 -41069018 + LTR50 LTR ERVL 747 795 0 213 237 118 13 chr15 60311633 60311709 -41068812 + MIR SINE MIR 34 117 -145 24 0 0 0 chr15 60311854 60311878 -41068643 + AT_rich Low_complexity Low_complexity 1 24 0 408 260 61 3 chr15 60312610 60312758 -41067763 + MIR SINE MIR 20 174 -34 218 125 0 0 chr15 60312758 60312790 -41067731 + L2 LINE L2 3265 3296 -17 253 246 15 15 chr15 60313424 60313489 -41067032 + L2 LINE L2 3234 3298 -15 2027 148 3 0 chr15 60313535 60313846 -41066675 - AluJb SINE Alu 0 312 1 4405 92 0 4 chr15 60314402 60314958 -41065563 - MER41A LTR ERV1 0 554 1 1652 169 16 44 chr15 60315576 60316022 -41064499 - AluJo SINE Alu 0 437 1 2862 108 9 41 chr15 60316401 60316844 -41063677 + MER1A DNA MER1_type 101 529 0 2110 91 0 18 chr15 60316934 60317230 -41063291 - AluSc SINE Alu 0 301 11 21 0 0 0 chr15 60317512 60317533 -41062988 + AT_rich Low_complexity Low_complexity 1 21 0 1603 170 13 29 chr15 60319332 60319643 -41060878 + AluJo SINE Alu 1 306 -6 31 44 0 0 chr15 60319747 60319792 -41060729 + AT_rich Low_complexity Low_complexity 1 45 0 1285 135 57 0 chr15 60321773 60321808 -41058713 + AluJo SINE Alu 85 117 -195 207 0 0 0 chr15 60321808 60321831 -41058690 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 1285 135 57 0 chr15 60321831 60321987 -41058534 + AluJo SINE Alu 117 287 -25 2219 106 0 0 chr15 60322094 60322396 -41058125 + AluSq SINE Alu 1 302 -11 230 122 20 20 chr15 60322926 60322975 -41057546 + (TA)n Simple_repeat Simple_repeat 2 50 0 307 260 148 18 chr15 60323040 60323209 -41057312 - L1ME2 LINE L1 -260 5904 5714 447 298 18 0 chr15 60323328 60323442 -41057079 + MIR3 SINE MIR 86 201 -7 7167 115 27 5 chr15 60323903 60325436 -41055085 - L1MA3 LINE L1 -10 6295 4732 23 0 0 0 chr15 60325502 60325525 -41054996 + AT_rich Low_complexity Low_complexity 1 23 0 460 239 211 71 chr15 60326065 60326487 -41054034 + MLT1L LTR MaLR 129 609 -6 2133 98 30 14 chr15 60326691 60326988 -41053533 - AluSx SINE Alu -10 302 1 181 301 86 65 chr15 60327676 60327769 -41052752 - MIR3 SINE MIR -46 162 68 1864 139 7 24 chr15 60328341 60328636 -41051885 + AluSx SINE Alu 1 290 -22 1224 150 26 22 chr15 60328727 60328954 -41051567 - L1MB2 LINE L1 0 6171 5944 181 352 0 0 chr15 60328987 60329041 -41051480 - L2 LINE L2 -12 3301 3248 526 237 0 129 chr15 60329732 60329878 -41050643 + MER5B DNA MER1_type 16 135 -43 1500 217 43 50 chr15 60329878 60330275 -41050246 - MSTD LTR MaLR -2 394 1 526 237 0 129 chr15 60330275 60330314 -41050207 + MER5B DNA MER1_type 135 177 -1 219 356 40 0 chr15 60331148 60331249 -41049272 - MIR3 SINE MIR -19 189 85 472 286 81 16 chr15 60331275 60331460 -41049061 + MIR3 SINE MIR 3 199 -9 309 269 77 10 chr15 60331567 60331671 -41048850 - MER21B LTR ERV1 -50 813 703 3740 194 9 43 chr15 60331693 60331810 -41048711 - MER21B LTR ERV1 -132 731 612 2313 114 5 30 chr15 60331810 60332011 -41048510 - MER46B DNA MER2_type -2495 236 172 2273 89 3 3 chr15 60332011 60332304 -41048217 - AluSp SINE Alu -20 293 1 2313 114 5 30 chr15 60332304 60332469 -41048052 - MER46B DNA MER2_type -2559 172 4 3740 194 9 43 chr15 60332469 60333103 -41047418 - MER21B LTR ERV1 -251 612 5 1784 179 42 9 chr15 60333131 60333466 -41047055 - MLT1A1 LTR MaLR -17 348 3 203 336 156 8 chr15 60333870 60333998 -41046523 - MIR3 SINE MIR -21 187 41 2248 115 0 0 chr15 60334363 60334668 -41045853 + AluSg SINE Alu 1 305 -5 2706 24 0 0 chr15 60335986 60336283 -41044238 + AluYb8 SINE Alu 1 297 -21 180 347 31 41 chr15 60337268 60337366 -41043155 + L3b LINE CR1 1242 1338 -245 363 191 138 11 chr15 60337794 60337888 -41042633 + L2 LINE L2 3208 3313 0 530 336 60 20 chr15 60338381 60338631 -41041890 - MIR SINE MIR 0 262 3 390 134 0 0 chr15 60338802 60338869 -41041652 - L1MB4 LINE L1 -1 6179 6113 2406 84 3 0 chr15 60338880 60339177 -41041344 - AluSq SINE Alu -13 300 3 21 0 0 0 chr15 60339184 60339205 -41041316 + AT_rich Low_complexity Low_complexity 1 21 0 255 180 180 116 chr15 60339320 60339509 -41041012 - L1ME4a LINE L1 -3 6118 5918 222 361 84 28 chr15 60339513 60339667 -41040854 - L2 LINE L2 -497 2817 2673 881 174 0 0 chr15 60339667 60339799 -41040722 + AluJo/FLAM SINE Alu 2 133 -169 820 163 0 0 chr15 60339680 60339809 -41040712 + FLAM_C SINE Alu 15 143 0 222 361 84 28 chr15 60339799 60339968 -41040553 - L2 LINE L2 -641 2673 2487 * 574 278 121 43 chr15 60340362 60340643 -41039878 + L2 LINE L2 3010 3312 -1 225 296 130 17 chr15 60340610 60340725 -41039796 - L2 LINE L2 -982 2332 2205 * 2406 75 0 0 chr15 60340762 60341054 -41039467 + AluY SINE Alu 1 292 -19 320 263 143 8 chr15 60341943 60342084 -41038437 - MIR SINE MIR -42 166 6 24 32 0 0 chr15 60342787 60342818 -41037703 + AT_rich Low_complexity Low_complexity 1 31 0 2026 140 3 25 chr15 60343384 60343698 -41036823 - AluSx SINE Alu -5 307 1 1827 113 0 4 chr15 60343994 60344241 -41036280 - AluSq SINE Alu -67 246 1 2251 127 49 22 chr15 60344324 60344873 -41035648 - MER51A LTR ERV1 -2 632 1 2051 90 45 7 chr15 60344955 60345244 -41035277 - AluSc SINE Alu -9 300 1 2386 86 0 0 chr15 60345679 60345971 -41034550 - AluSc SINE Alu -17 292 1 939 74 33 0 chr15 60346410 60346532 -41033989 + L1PA7 LINE L1 6029 6154 0 2292 144 64 1 chr15 60346922 60347403 -41033118 + L1PB4 LINE L1 5304 5858 -298 193 309 82 10 chr15 60347979 60348076 -41032445 - L2 LINE L2 0 3272 3169 794 172 0 0 chr15 60348323 60348439 -41032082 + FLAM_A SINE Alu 1 116 -17 288 77 0 0 chr15 60348451 60348490 -41032031 + (TA)n Simple_repeat Simple_repeat 1 39 0 1641 191 0 31 chr15 60353747 60354067 -41026454 + AluSx SINE Alu 1 310 -2 2271 117 3 0 chr15 60354321 60354630 -41025891 - AluSx SINE Alu -2 310 1 1903 130 18 14 chr15 60354638 60354923 -41025598 - AluJb SINE Alu -24 288 3 184 328 130 48 chr15 60354980 60355693 -41024828 + L2 LINE L2 1273 2044 -1270 2105 140 100 42 chr15 60355792 60356250 -41024271 + MLT1D LTR MaLR 21 505 0 318 353 121 36 chr15 60356252 60356966 -41023555 + L2 LINE L2 2232 3047 -225 2309 87 10 0 chr15 60356966 60357264 -41023257 + AluSq SINE Alu 1 301 -12 318 353 121 36 chr15 60357264 60357492 -41023029 + L2 LINE L2 3047 3254 -18 1870 136 3 7 chr15 60357500 60357786 -41022735 + AluJb SINE Alu 2 286 -26 1635 135 8 16 chr15 60357906 60358056 -41022465 - AluJb SINE Alu -27 285 136 2126 100 6 60 chr15 60358056 60358241 -41022280 - AluSx SINE Alu -10 302 140 2029 122 7 3 chr15 60358241 60358545 -41021976 - AluSx SINE Alu -7 305 1 2126 100 6 60 chr15 60358545 60358678 -41021843 - AluSx SINE Alu -172 140 1 1635 135 8 16 chr15 60358678 60358771 -41021750 - AluJb SINE Alu -176 136 44 2195 124 68 25 chr15 60358822 60359145 -41021376 + MER1B DNA MER1_type 1 337 0 193 0 29 59 chr15 60359353 60359387 -41021134 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 229 270 172 55 chr15 60359603 60359766 -41020755 + MIR3 SINE MIR 16 197 -11 2186 119 0 0 chr15 60360030 60360316 -41020205 - AluSx SINE Alu -26 286 1 2230 104 0 10 chr15 60360766 60361089 -41019432 - AluSx SINE Alu 0 320 1 313 294 43 11 chr15 60361678 60361770 -41018751 - L2 LINE L2 -52 3261 3167 258 110 0 68 chr15 60362465 60362538 -41017983 + (CCCCCG)n Simple_repeat Simple_repeat 4 71 0 500 188 48 118 chr15 60363161 60363347 -41017174 + MER5B DNA MER1_type 2 174 -4 664 244 60 15 chr15 60364564 60364765 -41015756 - L2 LINE L2 -1 3312 3103 2354 95 0 3 chr15 60364834 60365138 -41015383 - AluSq SINE Alu -10 303 1 260 269 30 0 chr15 60365783 60365850 -41014671 - L3 LINE CR1 -82 1495 1427 1627 195 44 0 chr15 60365908 60366205 -41014316 + AluJb SINE Alu 2 311 -1 269 264 136 84 chr15 60366274 60366547 -41013974 - L3 LINE CR1 -354 1223 937 210 37 0 0 chr15 60366575 60366602 -41013919 + (A)n Simple_repeat Simple_repeat 1 27 0 34 0 0 0 chr15 60366801 60366835 -41013686 + AT_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr15 60368196 60368232 -41012289 + AT_rich Low_complexity Low_complexity 1 36 0 1695 158 7 11 chr15 60368289 60368568 -41011953 - AluJo SINE Alu -32 280 3 2474 226 39 7 chr15 60368575 60369186 -41011335 - L1M4 LINE L1 -823 5323 4693 1424 152 54 54 chr15 60369186 60369259 -41011262 - Tigger3(Golem) DNA MER2_type -955 276 204 1941 153 7 0 chr15 60369259 60369554 -41010967 - AluJb SINE Alu -15 297 1 1424 152 54 54 chr15 60369554 60369756 -41010765 - Tigger3(Golem) DNA MER2_type -1026 205 1 336 156 111 0 chr15 60369758 60369893 -41010628 - L1PA15 LINE L1 -1 6164 5941 25 51 0 0 chr15 60370454 60370493 -41010028 + AT_rich Low_complexity Low_complexity 1 39 0 712 142 117 17 chr15 60370676 60370796 -41009725 - FLAM_C SINE Alu 0 133 2 23 68 0 0 chr15 60374303 60374347 -41006174 + AT_rich Low_complexity Low_complexity 1 44 0 1911 161 42 39 chr15 60374523 60374759 -41005762 + MER46B DNA MER2_type 1 115 -2616 1927 166 3 3 chr15 60374759 60375061 -41005460 + AluJb SINE Alu 1 302 -10 1911 161 42 39 chr15 60375061 60375184 -41005337 + MER46B DNA MER2_type 115 236 0 368 383 13 7 chr15 60375738 60375892 -41004629 + L2 LINE L2 3117 3271 -1 196 272 8 96 chr15 60375889 60376014 -41004507 - L2 LINE L2 -214 3058 2945 * 234 181 57 114 chr15 60376089 60376194 -41004327 + MIR SINE MIR 118 216 -46 425 348 45 11 chr15 60376510 60376688 -41003833 + L3 LINE CR1 1052 1235 -342 244 303 145 7 chr15 60376746 60376891 -41003630 + MLT1H LTR MaLR 97 261 -288 1718 171 3 23 chr15 60377419 60377729 -41002792 - AluJo SINE Alu -8 304 1 191 59 0 29 chr15 60378182 60378216 -41002305 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2016 105 0 11 chr15 60378220 60378505 -41002016 - AluY SINE Alu -29 282 1 1932 127 0 0 chr15 60378525 60378800 -41001721 - AluSg SINE Alu -1 309 35 1606 174 8 8 chr15 60378807 60379072 -41001449 - AluJb SINE Alu -16 296 32 413 252 31 16 chr15 60379977 60380104 -41000417 + L2 LINE L2 2386 2514 -800 180 0 0 0 chr15 60380438 60380458 -41000063 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 270 263 63 120 chr15 60380496 60380590 -40999931 + L3 LINE CR1 1251 1332 -245 1187 193 24 0 chr15 60380590 60380803 -40999718 - MER20 DNA MER1_type 0 219 2 270 263 63 120 chr15 60380803 60380883 -40999638 + L3 LINE CR1 1332 1415 -162 1985 87 56 11 chr15 60381693 60381980 -40998541 - AluSc SINE Alu -9 300 1 1767 170 0 20 chr15 60382281 60382587 -40997934 + AluJb SINE Alu 1 300 -12 200 338 14 0 chr15 60383069 60383143 -40997378 + L2 LINE L2 3227 3301 -12 1905 161 6 3 chr15 60383237 60383548 -40996973 - AluJb SINE Alu 0 312 1 544 209 157 15 chr15 60383743 60383877 -40996644 - MIR SINE MIR -79 183 31 2380 59 0 7 chr15 60384426 60384742 -40995779 - AluY SINE Alu 0 311 1 460 256 236 16 chr15 60385809 60386059 -40994462 - L1ME3A LINE L1 -219 5951 5647 804 205 18 0 chr15 60386060 60386226 -40994295 - MER5A DNA MER1_type -3 186 18 1884 99 33 93 chr15 60386617 60386949 -40993572 - AluSx SINE Alu 0 312 1 207 205 0 0 chr15 60387979 60388018 -40992503 + MIR SINE MIR 217 255 -7 2039 259 81 25 chr15 60388145 60388549 -40991972 - L1ME3A LINE L1 -4 6166 5786 1696 174 14 3 chr15 60388549 60388831 -40991690 - AluJb SINE Alu -27 285 1 2039 259 81 25 chr15 60388831 60388894 -40991627 - L1ME3A LINE L1 -384 5786 5728 437 0 19 0 chr15 60388894 60388947 -40991574 + (CA)n Simple_repeat Simple_repeat 2 55 0 2039 259 81 25 chr15 60388947 60389211 -40991310 - L1ME3A LINE L1 -442 5728 5393 479 266 71 0 chr15 60389213 60389397 -40991124 + L1ME3A LINE L1 5903 6099 -71 654 225 139 37 chr15 60389400 60389724 -40990797 - L1ME3A LINE L1 -747 5399 5043 218 306 112 35 chr15 60389990 60390160 -40990361 + L2 LINE L2 3042 3224 -89 556 179 160 19 chr15 60390990 60391146 -40989375 - MER5B DNA MER1_type 0 178 1 697 259 220 42 chr15 60395415 60395966 -40984555 - L2 LINE L2 -1096 2218 1570 2159 109 6 6 chr15 60395970 60396282 -40984239 - AluSx SINE Alu 0 312 1 959 253 102 5 chr15 60396285 60396688 -40983833 + L1ME4a LINE L1 2995 3436 -2710 1935 106 0 4 chr15 60396688 60396961 -40983560 + AluSq SINE Alu 41 312 -1 2212 230 43 29 chr15 60396973 60397556 -40982965 - L1MCb LINE L1 -5043 1002 412 1272 239 14 0 chr15 60397560 60397840 -40982681 - L1MCb LINE L1 -5761 284 1 476 330 86 46 chr15 60398225 60398573 -40981948 + L1ME4a LINE L1 4803 5164 -982 412 314 103 36 chr15 60398575 60398769 -40981752 + L1ME4a LINE L1 5193 5399 -747 336 255 103 53 chr15 60398807 60399006 -40981515 + L1ME4a LINE L1 5453 5660 -461 3811 180 42 44 chr15 60399057 60399824 -40980697 - MER21B LTR ERV1 -98 765 1 260 336 149 0 chr15 60399994 60400101 -40980420 - L2 LINE L2 0 3313 3191 453 235 59 123 chr15 60400130 60400334 -40980187 + L1ME4a LINE L1 5929 6119 -2 1658 193 48 70 chr15 60400440 60400643 -40979878 - MER4A LTR ERV1 0 695 489 2225 81 13 7 chr15 60400643 60400952 -40979569 + AluY SINE Alu 1 311 0 1658 193 48 70 chr15 60400952 60401464 -40979057 - MER4A LTR ERV1 -206 489 1 332 217 58 0 chr15 60401589 60401658 -40978863 + L2 LINE L2 2995 3067 -205 1690 195 35 57 chr15 60401701 60401922 -40978599 - L1ME2 LINE L1 -3 6161 5952 2138 116 13 0 chr15 60401922 60402225 -40978296 - AluSx SINE Alu -5 307 1 1690 195 35 57 chr15 60402225 60402428 -40978093 - L1ME2 LINE L1 -212 5952 5746 1265 144 31 35 chr15 60402484 60402713 -40977808 - MER21A LTR ERV1 0 931 704 2052 114 16 0 chr15 60402717 60403023 -40977498 - AluSx SINE Alu -1 311 1 462 217 64 19 chr15 60403887 60403901 -40976620 - L1MA10 LINE L1 0 6334 6321 408 260 88 74 chr15 60403901 60404167 -40976354 - L1ME1 LINE L1 -5 6161 5914 6186 103 109 43 chr15 60404168 60405318 -40975203 + Tigger3b DNA MER2_type 1 1226 -5 240 35 0 0 chr15 60405336 60405365 -40975156 + (TA)n Simple_repeat Simple_repeat 2 30 0 234 81 0 0 chr15 60405391 60405428 -40975093 + (TG)n Simple_repeat Simple_repeat 2 38 0 1275 196 78 31 chr15 60407161 60407518 -40973003 + Charlie5 DNA MER1_type 2240 2613 0 243 311 42 50 chr15 60408217 60408336 -40972185 + L2 LINE L2 2946 3063 -209 210 105 0 0 chr15 60409591 60409629 -40970892 + (CA)n Simple_repeat Simple_repeat 1 38 0 841 83 0 0 chr15 60409729 60409838 -40970683 - AluSg/x SINE Alu -11 299 191 615 241 37 73 chr15 60412415 60412606 -40967915 - MER5A DNA MER1_type -5 184 1 2192 102 0 0 chr15 60413304 60413599 -40966922 - AluSg1 SINE Alu -14 295 1 2078 117 0 0 chr15 60413654 60413966 -40966555 - AluSx SINE Alu 0 312 1 258 260 208 0 chr15 60417797 60417893 -40962628 - L2 LINE L2 -3 3269 3154 198 304 125 9 chr15 60418009 60418121 -40962400 - L2 LINE L2 -193 3079 2955 2091 113 10 3 chr15 60419209 60419519 -40961002 - AluSx SINE Alu 0 312 1 942 192 47 23 chr15 60420016 60420230 -40960291 + MER20 DNA MER1_type 1 219 0 969 168 0 17 chr15 60420414 60420593 -40959928 - FRAM SINE Alu 0 176 1 1202 61 0 0 chr15 60421509 60421657 -40958864 - AluSg/x SINE Alu -5 307 160 368 324 9 0 chr15 60421661 60421766 -40958755 - MIR SINE MIR -65 143 38 2059 90 43 7 chr15 60422408 60422707 -40957814 - AluSg SINE Alu 0 310 1 923 91 0 0 chr15 60422707 60422828 -40957693 - AluSq/x SINE Alu -177 135 15 294 276 127 22 chr15 60424686 60424820 -40955701 + MIR3 SINE MIR 24 171 -37 197 318 61 0 chr15 60424838 60424904 -40955617 + L2 LINE L2 3148 3217 -55 2336 110 3 29 chr15 60426225 60426571 -40953950 + MER1B DNA MER1_type 1 337 0 3354 111 16 23 chr15 60427227 60427740 -40952781 - MER4B LTR ERV1 -101 509 1 21 36 0 0 chr15 60427922 60427950 -40952571 + AT_rich Low_complexity Low_complexity 1 28 0 2249 81 10 0 chr15 60428245 60428542 -40951979 - AluSp SINE Alu -9 304 5 2364 123 142 92 chr15 60428772 60429404 -40951117 + MER4A LTR ERV1 1 664 0 238 300 144 38 chr15 60430107 60430267 -40950254 + L3 LINE CR1 981 1157 -420 344 333 70 16 chr15 60431026 60431155 -40949366 - MIR SINE MIR -103 159 24 341 294 63 24 chr15 60431979 60432105 -40948416 - L2 LINE L2 -1 3312 3182 546 68 27 0 chr15 60432178 60432251 -40948270 + MADE1 DNA Mariner 6 80 0 227 280 224 9 chr15 60434720 60434827 -40945694 + L2 LINE L2 3138 3267 -5 842 218 106 40 chr15 60435719 60436068 -40944453 - L1MC5 LINE L1 -50 7911 7540 193 245 103 77 chr15 60436925 60437010 -40943511 - L2 LINE L2 -1524 1790 1709 2123 119 0 3 chr15 60437010 60437322 -40943199 - AluSx SINE Alu -1 311 1 193 245 103 77 chr15 60437322 60437469 -40943052 - L2 LINE L2 -1605 1709 1552 788 302 80 42 chr15 60437963 60438364 -40942157 - L2 LINE L2 0 3313 2898 268 326 134 17 chr15 60438490 60438662 -40941859 - L3 LINE CR1 -189 1388 1197 886 127 0 16 chr15 60438686 60438812 -40941709 - FLAM_C SINE Alu -9 124 1 572 108 0 0 chr15 60439455 60439538 -40940983 + FLAM SINE Alu 49 131 -12 187 259 194 43 chr15 60439563 60439702 -40940819 + L3 LINE CR1 1197 1356 -221 832 210 16 0 chr15 60440339 60440525 -40939996 + MER5A DNA MER1_type 1 189 0 606 140 10 0 chr15 60440686 60440786 -40939735 + L1M4 LINE L1 5720 5820 -354 1026 166 0 16 chr15 60440968 60441155 -40939366 - MER5A DNA MER1_type -1 188 5 423 258 84 13 chr15 60441173 60441328 -40939193 - MER5B DNA MER1_type -6 172 7 23 0 0 0 chr15 60441433 60441456 -40939065 + AT_rich Low_complexity Low_complexity 1 23 0 1862 186 52 44 chr15 60441457 60441921 -40938600 - L1MB5 LINE L1 -9 6165 5689 222 37 0 0 chr15 60443287 60443314 -40937207 + (CA)n Simple_repeat Simple_repeat 2 28 0 288 179 263 117 chr15 60443327 60443506 -40937015 + L1MC4 LINE L1 7474 7678 -364 1935 246 41 20 chr15 60443804 60444312 -40936209 - LTR40a LTR ERVL 0 519 1 1003 177 31 0 chr15 60445161 60445353 -40935168 + MER20 DNA MER1_type 1 198 -21 256 200 0 0 chr15 60445738 60445783 -40934738 - MIR SINE MIR -6 256 212 1097 202 28 0 chr15 60445786 60445999 -40934522 - MER58A DNA MER1_type 0 224 6 521 343 29 0 chr15 60446001 60446173 -40934348 - MIR SINE MIR -43 219 43 228 328 115 23 chr15 60446476 60446650 -40933871 - L3b LINE CR1 -182 1401 1212 523 232 96 45 chr15 60446660 60446837 -40933684 + MIR SINE MIR 8 193 -69 211 231 19 0 chr15 60447165 60447217 -40933304 - L2 LINE L2 -2 3270 3218 2271 68 39 0 chr15 60447681 60447962 -40932559 + AluSp SINE Alu 1 292 -21 715 139 44 73 chr15 60447985 60448122 -40932399 + FLAM_C SINE Alu 1 133 0 851 188 12 6 chr15 60448725 60448885 -40931636 - AluJb SINE Alu -14 298 138 194 326 174 14 chr15 60449162 60449300 -40931221 + MIR3 SINE MIR 20 179 -29 2157 119 7 7 chr15 60449631 60449934 -40930587 + AluSx SINE Alu 1 303 -9 532 291 127 72 chr15 60449977 60450396 -40930125 + L2 LINE L2 2828 3269 -3 2268 129 0 0 chr15 60450687 60450996 -40929525 - AluSx SINE Alu -3 309 1 346 235 0 12 chr15 60451942 60452023 -40928498 - HsTC2 DNA Tc2 -1815 83 4 185 282 0 0 chr15 60453109 60453148 -40927373 - MIR SINE MIR -64 198 160 583 273 32 64 chr15 60453169 60453255 -40927266 - MIR SINE MIR -24 238 151 1041 124 68 23 chr15 60453255 60453432 -40927089 - MER5A DNA MER1_type -4 185 1 583 273 32 64 chr15 60453432 60453565 -40926956 - MIR SINE MIR -111 151 26 1838 137 65 3 chr15 60453955 60454247 -40926274 + AluJb SINE Alu 2 311 -1 2533 90 0 0 chr15 60454266 60454578 -40925943 + AluSx SINE Alu 1 312 0 187 102 20 20 chr15 60455615 60455664 -40924857 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 380 228 102 8 chr15 60455726 60455853 -40924668 - L1ME3A LINE L1 0 6170 6032 2138 110 24 0 chr15 60456856 60457147 -40923374 + AluSx SINE Alu 1 298 -14 428 284 97 23 chr15 60457344 60457520 -40923001 - MER5A DNA MER1_type 0 189 1 219 280 160 30 chr15 60457521 60457621 -40922900 - MIR3 SINE MIR -49 159 47 289 302 164 13 chr15 60457955 60458187 -40922334 + L2 LINE L2 2825 3091 -181 2358 104 7 0 chr15 60459569 60459877 -40920644 - AluSq SINE Alu -3 310 1 298 292 14 0 chr15 60460049 60460121 -40920400 + MIR3 SINE MIR 85 157 -51 831 223 26 22 chr15 60460124 60460393 -40920128 + HAL1 LINE L1 2234 2503 -4 2123 144 20 0 chr15 60461040 60461346 -40919175 + AluJb SINE Alu 1 312 0 551 101 0 11 chr15 60461349 60461438 -40919083 + (GAAA)n Simple_repeat Simple_repeat 2 89 0 383 247 113 33 chr15 60462109 60462259 -40918262 - MLT1D LTR MaLR -337 168 7 413 297 118 20 chr15 60462592 60462787 -40917734 + L1MC/D LINE L1 5556 5772 -392 297 224 90 0 chr15 60462802 60462869 -40917652 - LTR16C LTR ERVL -7 484 412 938 279 101 20 chr15 60462929 60463334 -40917187 + LTR16A LTR ERVL 1 438 -12 1251 184 56 39 chr15 60463506 60463740 -40916781 - AluJo SINE Alu -69 243 6 26 30 0 0 chr15 60463744 60463777 -40916744 + AT_rich Low_complexity Low_complexity 1 33 0 1647 161 104 7 chr15 60464025 60464305 -40916216 + AluJo SINE Alu 1 307 -5 363 185 19 9 chr15 60465128 60465236 -40915285 + CT-rich Low_complexity Low_complexity 2 110 0 489 227 57 63 chr15 60465480 60465684 -40914837 + MIR SINE MIR 2 213 -49 379 180 6 13 chr15 60466636 60466710 -40913811 - MIR3 SINE MIR -30 178 103 237 304 0 14 chr15 60467347 60467416 -40913105 - L2 LINE L2 0 3313 3246 225 227 45 30 chr15 60467735 60467801 -40912720 + L2 LINE L2 2872 2938 -375 1389 180 4 8 chr15 60467805 60468050 -40912471 - AluJo SINE Alu -64 248 5 2608 135 52 2 chr15 60468101 60468509 -40912012 - MSTC LTR MaLR 0 428 1 23 0 0 0 chr15 60468598 60468621 -40911900 + AT_rich Low_complexity Low_complexity 1 23 0 858 145 0 0 chr15 60468623 60468747 -40911774 - FLAM_C SINE Alu -7 126 3 197 273 236 0 chr15 60468747 60468802 -40911719 + L2 LINE L2 3184 3251 -21 612 243 64 50 chr15 60469073 60469321 -40911200 + MIR SINE MIR 5 262 0 358 338 23 35 chr15 60469328 60469502 -40911019 - MIR SINE MIR -85 123 4 21 0 0 0 chr15 60469533 60469554 -40910967 + AT_rich Low_complexity Low_complexity 1 21 0 265 262 198 32 chr15 60470522 60470648 -40909873 - MIR SINE MIR -107 155 9 230 138 0 103 chr15 60470988 60471034 -40909487 - L1M3 LINE L1 -732 5439 5399 1621 111 5 0 chr15 60471034 60471242 -40909279 - AluJb SINE Alu -17 295 87 230 138 0 103 chr15 60471242 60471253 -40909268 - L1M3 LINE L1 -772 5399 5388 488 239 116 136 chr15 60471438 60471894 -40908627 + L2 LINE L2 2824 3270 -2 229 282 90 0 chr15 60471979 60472057 -40908464 - MIR SINE MIR -3 259 175 222 216 20 0 chr15 60472239 60472290 -40908231 + L2 LINE L2 3262 3313 0 2362 102 0 0 chr15 60472457 60472760 -40907761 - AluSg SINE Alu -7 303 1 459 192 144 16 chr15 60472780 60472905 -40907616 - MLT1J1 LTR MaLR -305 141 1 311 209 58 58 chr15 60472981 60473067 -40907454 - MIR3 SINE MIR -28 180 95 816 184 101 32 chr15 60473090 60473307 -40907214 + AluJo SINE Alu 3 234 -78 1889 170 20 0 chr15 60473854 60474160 -40906361 + AluJb SINE Alu 1 312 0 551 101 0 11 chr15 60474163 60474252 -40906269 + (GAAA)n Simple_repeat Simple_repeat 2 89 0 2480 91 3 0 chr15 60474688 60474997 -40905524 + AluSp SINE Alu 1 310 -3 289 302 164 13 chr15 60476379 60476611 -40903910 - L2 LINE L2 -181 3091 2825 230 270 160 30 chr15 60476947 60477047 -40903474 + MIR3 SINE MIR 47 159 -49 428 275 90 28 chr15 60477048 60477226 -40903295 + MER5A DNA MER1_type 1 189 0 2138 110 24 0 chr15 60477423 60477714 -40902807 - AluSx SINE Alu -14 298 1 261 282 111 0 chr15 60478717 60478834 -40901687 + L1ME3A LINE L1 6032 6161 -9 551 101 0 11 chr15 60479573 60479662 -40900859 + (TTTC)n Simple_repeat Simple_repeat 2 89 0 2123 144 20 0 chr15 60479665 60479971 -40900550 - AluJb SINE Alu 0 312 1 831 223 26 22 chr15 60480618 60480887 -40899634 - HAL1 LINE L1 -4 2503 2234 298 292 14 0 chr15 60480890 60480962 -40899559 - MIR3 SINE MIR -51 157 85 2324 96 0 0 chr15 60481134 60481426 -40899095 + AluSx SINE Alu 1 292 -20 219 69 0 0 chr15 60482390 60482419 -40898102 + (TG)n Simple_repeat Simple_repeat 1 29 0 271 155 10 58 chr15 60483286 60483389 -40897132 + GA-rich Low_complexity Low_complexity 2 99 0 383 119 15 0 chr15 60484040 60484107 -40896414 + (TG)n Simple_repeat Simple_repeat 1 68 0 770 111 17 0 chr15 60485190 60485307 -40895214 - LTR8 LTR ERV1 0 691 573 2150 132 10 0 chr15 60485308 60485612 -40894909 - AluSx SINE Alu -5 307 1 885 106 0 0 chr15 60485612 60485725 -40894796 - AluSq/x SINE Alu -178 135 23 2096 192 20 88 chr15 60485725 60485758 -40894763 - LTR8 LTR ERV1 -128 563 529 2020 94 49 4 chr15 60485758 60486047 -40894474 - AluSg SINE Alu 0 301 1 2096 192 20 88 chr15 60486047 60486615 -40893906 - LTR8 LTR ERV1 -162 529 1 205 276 13 66 chr15 60486995 60487034 -40893487 - L2 LINE L2 -19 3253 3218 3083 131 198 7 chr15 60487034 60487624 -40892897 + MER39 LTR ERV1 5 707 0 205 276 13 66 chr15 60487624 60487660 -40892861 - L2 LINE L2 -54 3218 3182 191 384 18 18 chr15 60488409 60488521 -40892000 - MIR SINE MIR -73 135 24 278 266 145 44 chr15 60489141 60489325 -40891196 + MIR3 SINE MIR 3 196 -58 189 0 0 0 chr15 60489342 60489363 -40891158 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 235 200 33 33 chr15 60489363 60489423 -40891098 - L2 LINE L2 -32 3281 3222 404 213 189 8 chr15 60489804 60489931 -40890590 - MIR SINE MIR -11 251 102 2216 120 13 0 chr15 60490072 60490380 -40890141 - AluSx SINE Alu 0 312 1 207 113 57 19 chr15 60490679 60490732 -40889789 + GA-rich Low_complexity Low_complexity 2 56 0 289 296 101 35 chr15 60490966 60491135 -40889386 + MIR SINE MIR 33 212 -50 196 309 62 0 chr15 60491299 60491380 -40889141 + MIR SINE MIR 70 155 -107 364 259 47 133 chr15 60491827 60491970 -40888551 + MIR SINE MIR 9 122 -140 2359 121 0 0 chr15 60491970 60492283 -40888238 + AluSq SINE Alu 1 313 0 364 259 47 133 chr15 60492283 60492394 -40888127 + MIR SINE MIR 122 241 -21 1937 118 0 45 chr15 60494105 60494419 -40886102 - AluSx SINE Alu -12 300 1 847 218 6 0 chr15 60495248 60495422 -40885099 - FRAM SINE Alu -1 175 1 2034 120 30 0 chr15 60496028 60496328 -40884193 + AluSx SINE Alu 1 309 -3 558 153 10 10 chr15 60496511 60496609 -40883912 + FLAM_A SINE Alu 35 132 -10 736 203 101 63 chr15 60496646 60496699 -40883822 - L1MC5 LINE L1 -169 7792 7743 1094 154 46 0 chr15 60496699 60496874 -40883647 - MER5A DNA MER1_type -2 187 5 736 203 101 63 chr15 60496874 60497106 -40883415 - L1MC5 LINE L1 -218 7743 7496 2122 97 0 26 chr15 60497187 60497495 -40883026 + AluSx SINE Alu 1 300 -12 527 252 77 13 chr15 60497648 60497803 -40882718 + MIR SINE MIR 79 243 -19 224 275 59 128 chr15 60497966 60498286 -40882235 + L2 LINE L2 2397 2694 -620 206 250 33 0 chr15 60498290 60498350 -40882171 + CT-rich Low_complexity Low_complexity 2 63 0 2949 142 22 73 chr15 60498542 60499127 -40881394 - LTR10A LTR ERV1 -54 555 1 1034 296 96 41 chr15 60499234 60499350 -40881171 - L1ME LINE L1 -469 5701 5593 1889 192 108 78 chr15 60499350 60499992 -40880529 + MER67B LTR ERV1 1 661 0 1034 296 96 41 chr15 60499992 60500149 -40880372 - L1ME LINE L1 -577 5593 5446 1929 73 0 4 chr15 60500149 60500419 -40880102 + AluSc SINE Alu 35 303 0 1034 296 96 41 chr15 60500419 60501655 -40878866 - L1ME LINE L1 -724 5446 4112 400 341 153 19 chr15 60502173 60502551 -40877970 + L2 LINE L2 2832 3260 -12 2213 108 0 6 chr15 60502729 60503043 -40877478 + AluSx SINE Alu 1 312 0 2225 104 0 0 chr15 60503151 60503458 -40877063 + AluSx SINE Alu 1 307 -5 809 216 127 117 chr15 60503996 60504423 -40876098 + MLT1H LTR MaLR 119 549 0 2236 120 39 25 chr15 60504855 60505214 -40875307 + THE1B LTR MaLR 1 364 0 271 236 38 132 chr15 60505234 60505340 -40875181 + MER91C DNA MER1_type 17 112 -28 396 100 0 0 chr15 60505386 60505436 -40875085 + Alu SINE Alu 2 51 -251 228 35 0 0 chr15 60505479 60505508 -40875013 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1364 166 0 39 chr15 60505533 60505792 -40874729 - AluJo SINE Alu -63 249 1 906 209 53 0 chr15 60506455 60506642 -40873879 - MER3 DNA MER1_type -8 201 5 2315 89 0 0 chr15 60507541 60507843 -40872678 + AluSg SINE Alu 1 302 -8 1711 163 23 3 chr15 60508657 60508963 -40871558 - AluJb SINE Alu 0 312 1 1205 190 80 80 chr15 60509551 60509838 -40870683 - MLT1A1 LTR MaLR -2 363 74 2226 96 0 3 chr15 60509838 60510141 -40870380 - AluSx SINE Alu -10 302 1 1205 190 80 80 chr15 60510141 60510216 -40870305 - MLT1A1 LTR MaLR -290 75 1 266 231 31 15 chr15 60510654 60510719 -40869802 + MIR SINE MIR 79 144 -118 231 376 54 13 chr15 60511264 60511413 -40869108 - L2 LINE L2 -1 3271 3117 275 291 136 39 chr15 60511550 60511939 -40868582 - L1ME4a LINE L1 -137 5984 5558 3231 152 18 2 chr15 60511947 60512447 -40868074 - MLT2B1 LTR ERVL 0 520 13 331 291 130 48 chr15 60512463 60512672 -40867849 - L1ME4a LINE L1 -780 5553 5321 1854 163 0 0 chr15 60512889 60513196 -40867325 - AluSx SINE Alu 0 312 6 1964 88 11 0 chr15 60513227 60513489 -40867032 - AluSg SINE Alu -45 265 1 884 117 44 0 chr15 60514452 60514589 -40865932 + FLAM_C SINE Alu 1 143 0 293 241 0 0 chr15 60515774 60515828 -40864693 - Zaphod DNA AcHobo 0 4031 3978 * 816 319 80 24 chr15 60515827 60516200 -40864321 - MER115 DNA AcHobo -240 453 60 2391 82 0 0 chr15 60517203 60517508 -40863013 + AluSx SINE Alu 1 305 -7 296 331 76 58 chr15 60518026 60518198 -40862323 - MER91A DNA MER1_type 0 196 22 2548 141 52 5 chr15 60518224 60518628 -40861893 + MSTA LTR MaLR 6 428 0 1624 157 16 36 chr15 60518703 60519008 -40861513 + AluJb SINE Alu 14 312 0 979 224 19 14 chr15 60519069 60519283 -40861238 + MER58A DNA MER1_type 10 224 0 1988 141 0 10 chr15 60519371 60519684 -40860837 + AluJb SINE Alu 1 310 -2 423 182 24 43 chr15 60519687 60519779 -40860742 + GA-rich Low_complexity Low_complexity 1 93 -442 2140 110 10 0 chr15 60519779 60520088 -40860433 + AluSq SINE Alu 1 312 -1 423 182 24 43 chr15 60520088 60520233 -40860288 + GA-rich Low_complexity Low_complexity 93 535 0 951 98 0 0 chr15 60520239 60520371 -40860150 + AluY SINE Alu 1 132 -179 201 74 0 0 chr15 60520371 60520398 -40860123 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 1155 45 0 19 chr15 60520400 60520556 -40859965 + AluY SINE Alu 127 279 -32 314 281 58 70 chr15 60521027 60521198 -40859323 + MER5B DNA MER1_type 10 178 0 228 337 22 22 chr15 60521575 60521667 -40858854 + MIR SINE MIR 121 212 -50 295 287 21 133 chr15 60521951 60522139 -40858382 + MER5A DNA MER1_type 10 176 -13 404 180 234 18 chr15 60522457 60522568 -40857953 + L2 LINE L2 3170 3304 -9 1998 177 64 33 chr15 60523210 60523663 -40856858 + MLT1C LTR MaLR 1 467 0 272 236 47 9 chr15 60523848 60523954 -40856567 + (TA)n Simple_repeat Simple_repeat 2 111 0 518 235 49 109 chr15 60524603 60524724 -40855797 - MIR SINE MIR -59 203 95 1737 159 7 0 chr15 60524724 60525013 -40855508 + AluSx SINE Alu 1 291 -21 518 235 49 109 chr15 60525013 60525074 -40855447 - MIR SINE MIR -167 95 32 2059 92 17 14 chr15 60525420 60525712 -40854809 + AluSq SINE Alu 1 293 -20 312 104 45 0 chr15 60525952 60526019 -40854502 + (TGGA)n Simple_repeat Simple_repeat 3 72 0 5255 234 84 52 chr15 60526508 60526865 -40853656 - L1MEc LINE L1 -3552 2663 2319 1897 134 0 61 chr15 60526865 60527193 -40853328 - AluSx SINE Alu -4 308 1 5255 234 84 52 chr15 60527193 60527593 -40852928 - L1MEc LINE L1 -3896 2319 1933 1994 132 13 0 chr15 60527593 60527896 -40852625 + AluJb SINE Alu 1 307 -5 5255 234 84 52 chr15 60527896 60528006 -40852515 - L1MEc LINE L1 -4282 1933 1828 2109 104 3 0 chr15 60528006 60528303 -40852218 - AluSg SINE Alu -11 299 2 5255 234 84 52 chr15 60528303 60529588 -40850933 - L1MEc LINE L1 -4387 1828 466 1556 179 184 41 chr15 60529596 60530032 -40850489 - MLT1D LTR MaLR -1 504 7 458 294 59 12 chr15 60530365 60530560 -40849961 + L1ME3A LINE L1 5556 5772 -392 342 209 90 0 chr15 60530575 60530642 -40849879 - LTR16C LTR ERVL -7 484 412 1290 270 95 12 chr15 60530702 60531113 -40849408 + LTR16A LTR ERVL 1 445 -5 1413 220 57 24 chr15 60531119 60531455 -40849066 - LTR16C LTR ERVL -144 347 1 226 254 90 0 chr15 60531455 60531522 -40848999 + L1ME3A LINE L1 5786 5858 -312 257 154 0 0 chr15 60531522 60531561 -40848960 + 5S rRNA rRNA 1 39 -82 242 295 0 0 chr15 60531561 60531666 -40848855 + L1ME3A LINE L1 5844 5948 -222 1734 143 7 4 chr15 60531930 60532202 -40848319 + AluJo SINE Alu 1 273 -39 25 65 0 0 chr15 60532204 60532250 -40848271 + AT_rich Low_complexity Low_complexity 1 46 0 5463 100 9 0 chr15 60532431 60533183 -40847338 - L1PA13 LINE L1 0 6163 5405 339 308 104 46 chr15 60533237 60533439 -40847082 - L1ME4a LINE L1 -76 6045 5856 1943 149 0 0 chr15 60533439 60533734 -40846787 - AluJb SINE Alu -17 295 1 339 308 104 46 chr15 60533734 60533943 -40846578 - L1ME4a LINE L1 -265 5856 5610 615 363 0 1 chr15 60534166 60534386 -40846135 + MIR SINE MIR 34 251 -11 277 300 50 20 chr15 60534911 60535011 -40845510 - MIR3 SINE MIR -103 105 3 200 313 0 0 chr15 60535385 60535433 -40845088 - MIR3 SINE MIR -47 161 114 194 271 0 0 chr15 60535982 60536030 -40844491 + L2 LINE L2 2190 2237 -1077 585 241 54 54 chr15 60536353 60536594 -40843927 + L2 LINE L2 2338 2578 -736 1723 181 3 49 chr15 60536610 60536969 -40843552 - Charlie4a DNA MER1_type -1516 445 104 1828 132 0 14 chr15 60536969 60537249 -40843272 + AluSx SINE Alu 1 276 -36 1723 181 3 49 chr15 60537249 60537275 -40843246 - Charlie4a DNA MER1_type -1857 104 78 470 140 10 0 chr15 60537280 60537380 -40843141 + (CA)n Simple_repeat Simple_repeat 2 102 0 518 288 44 48 chr15 60537453 60537670 -40842851 + L2 LINE L2 2597 2813 -500 3195 170 86 25 chr15 60537670 60538354 -40842167 + LTR8A LTR ERV1 2 727 0 518 288 44 48 chr15 60538354 60538581 -40841940 + L2 LINE L2 2813 3115 -198 4299 142 18 10 chr15 60538622 60539327 -40841194 + MER50 LTR ERV1 1 711 -23 1891 266 112 8 chr15 60540382 60540972 -40839549 - MER115 DNA AcHobo -28 665 15 295 157 114 14 chr15 60541110 60541180 -40839341 + MARNA DNA Mariner 311 387 -199 2025 117 0 23 chr15 60541460 60541760 -40838761 + AluSx SINE Alu 1 293 -19 2054 94 10 7 chr15 60541764 60542052 -40838469 + L1PA10 LINE L1 5872 6160 -8 316 286 14 86 chr15 60542447 60542652 -40837869 - MIR3 SINE MIR -64 198 6 237 313 58 8 chr15 60543795 60543897 -40836624 + MIR SINE MIR 80 144 -64 663 282 101 0 chr15 60543951 60544160 -40836361 - MIR SINE MIR -10 252 23 296 247 11 21 chr15 60544380 60544473 -40836048 - MIR SINE MIR -124 138 47 265 259 35 0 chr15 60545810 60545868 -40834653 + L2 LINE L2 3222 3281 -32 190 156 0 0 chr15 60545969 60546001 -40834520 + MIR SINE MIR 118 149 -113 2016 125 23 16 chr15 60546209 60546514 -40834007 + AluSx SINE Alu 1 307 -5 2474 90 0 3 chr15 60546516 60546828 -40833693 + AluY SINE Alu 1 311 0 306 287 33 16 chr15 60547063 60547185 -40833336 + MARNA DNA Mariner 322 445 -141 270 239 30 0 chr15 60547186 60547253 -40833268 + MER5B DNA MER1_type 7 75 -103 455 355 41 6 chr15 60547302 60547474 -40833047 - MIR SINE MIR 0 262 85 681 193 51 40 chr15 60547859 60548035 -40832486 - MER5B DNA MER1_type 0 178 1 507 268 20 20 chr15 60548050 60548203 -40832318 - MARNA DNA Mariner -160 426 274 361 277 27 68 chr15 60548729 60548825 -40831696 + MIR3 SINE MIR 65 154 -54 1645 177 0 14 chr15 60548825 60549107 -40831414 + AluJo SINE Alu 14 291 -21 361 277 27 68 chr15 60549107 60549158 -40831363 + MIR3 SINE MIR 154 206 -2 445 316 153 10 chr15 60549611 60549820 -40830701 + MIR SINE MIR 1 239 -23 791 156 32 26 chr15 60550711 60550865 -40829656 - MER5B DNA MER1_type -23 155 1 433 227 30 49 chr15 60550965 60551117 -40829404 - MIR SINE MIR -62 146 28 1196 128 0 6 chr15 60551281 60551460 -40829061 - L1PA10 LINE L1 0 6168 5991 324 301 117 0 chr15 60551464 60551567 -40828954 - MIR SINE MIR -58 150 36 348 242 50 8 chr15 60551717 60551837 -40828684 + L1MC4 LINE L1 7917 8041 -1 2347 87 6 16 chr15 60551873 60552184 -40828337 + AluSc SINE Alu 1 308 -1 2621 119 52 27 chr15 60553418 60553510 -40827011 - LTR32 LTR ERVL 0 471 383 2573 65 0 0 chr15 60553510 60553816 -40826705 - AluY SINE Alu -5 306 1 2621 119 52 27 chr15 60553816 60554169 -40826352 - LTR32 LTR ERVL -88 383 15 260 247 27 14 chr15 60554354 60554392 -40826129 + CT-rich Low_complexity Low_complexity 1 37 -37 2528 69 7 0 chr15 60554392 60554697 -40825824 - AluY SINE Alu -4 307 1 260 247 27 14 chr15 60554697 60554731 -40825790 + CT-rich Low_complexity Low_complexity 37 74 0 366 238 81 60 chr15 60554920 60555105 -40825416 - MER53 DNA DNA 0 189 1 1667 185 26 0 chr15 60555347 60555650 -40824871 - AluJb SINE Alu 0 312 2 409 330 0 0 chr15 60555794 60555900 -40824621 - MIR SINE MIR -117 145 40 351 191 371 0 chr15 60556135 60556240 -40824281 + MER5B DNA MER1_type 1 144 -34 861 156 8 0 chr15 60556648 60556776 -40823745 - FLAM_C SINE Alu -4 129 1 410 293 34 54 chr15 60556920 60557125 -40823396 + MIR SINE MIR 60 260 -2 2373 98 3 0 chr15 60557215 60557511 -40823010 - AluSp SINE Alu -16 297 1 572 201 173 0 chr15 60557673 60557812 -40822709 + MER5A DNA MER1_type 21 183 -6 479 254 34 0 chr15 60557988 60558106 -40822415 - MIR SINE MIR -92 170 49 3133 146 28 38 chr15 60558298 60558343 -40822178 - L1MB7 LINE L1 -12 6172 6128 2355 112 0 6 chr15 60558343 60558655 -40821866 - AluSx SINE Alu -2 310 1 3133 146 28 38 chr15 60558655 60559217 -40821304 - L1MB7 LINE L1 -56 6128 5571 188 345 73 0 chr15 60559345 60559400 -40821121 - L2 LINE L2 -2135 1179 1121 518 239 75 22 chr15 60559436 60559570 -40820951 + MIR3 SINE MIR 25 165 -43 325 220 140 30 chr15 60559938 60560038 -40820483 - L1ME4a LINE L1 -4 6117 6007 267 96 110 14 chr15 60560038 60560111 -40820410 + L1MA8 LINE L1 6212 6291 0 418 254 188 58 chr15 60560149 60560389 -40820132 - L1ME4a LINE L1 -172 5949 5679 180 333 42 88 chr15 60560593 60560833 -40819688 + L2 LINE L2 2836 3064 -208 1971 143 4 0 chr15 60560896 60561175 -40819346 - AluSx SINE Alu -32 280 1 379 305 64 5 chr15 60561332 60561519 -40819002 + MLT1J1 LTR MaLR 1 198 -248 361 250 28 28 chr15 60561540 60561648 -40818873 + MLT1J2 LTR MaLR 266 373 -77 4476 131 87 50 chr15 60561916 60563302 -40817219 + pTR5 LTR ERV1 171 2295 -143 207 0 0 0 chr15 60563700 60563723 -40816798 + (CCTG)n Simple_repeat Simple_repeat 2 24 0 462 279 151 0 chr15 60563839 60564011 -40816510 - MIR SINE MIR -6 256 59 1677 272 87 8 chr15 60564723 60565568 -40814953 + L1ME3A LINE L1 5030 5950 -220 1739 191 10 7 chr15 60565612 60565916 -40814605 + AluJo SINE Alu 1 305 -7 377 282 106 45 chr15 60566403 60566641 -40813880 - MIR SINE MIR -11 251 3 239 258 367 0 chr15 60567129 60567257 -40813264 + MIR SINE MIR 78 252 -10 2267 113 3 0 chr15 60567300 60567601 -40812920 - AluSq SINE Alu -10 303 2 248 167 117 0 chr15 60567966 60568026 -40812495 + MIR SINE MIR 51 117 -91 303 298 82 53 chr15 60568875 60568916 -40811605 + L1ME LINE L1 5647 5685 -436 2251 97 0 0 chr15 60568916 60569206 -40811315 + AluSx SINE Alu 7 296 -16 303 298 82 53 chr15 60569206 60569335 -40811186 + L1ME LINE L1 5685 5822 -299 399 241 143 0 chr15 60569595 60569707 -40810814 + L2 LINE L2 3143 3270 -2 263 336 35 21 chr15 60570261 60570404 -40810117 - MIR SINE MIR -116 146 2 236 254 0 0 chr15 60570501 60570564 -40809957 + L1ME LINE L1 5600 5662 -459 26 30 0 0 chr15 60570576 60570609 -40809912 + AT_rich Low_complexity Low_complexity 1 33 0 407 291 24 86 chr15 60571232 60571284 -40809237 + MLT1L LTR MaLR 14 68 -547 2434 62 0 3 chr15 60571284 60571572 -40808949 + AluY SINE Alu 7 293 -18 407 291 24 86 chr15 60571572 60571811 -40808710 + MLT1L LTR MaLR 68 287 -328 239 315 14 0 chr15 60571932 60572005 -40808516 + MLT1L LTR MaLR 465 538 -77 340 309 0 0 chr15 60572042 60572126 -40808395 + L2 LINE L2 3230 3313 0 455 268 218 6 chr15 60572297 60572476 -40808045 + MIR SINE MIR 40 256 -6 1951 193 64 46 chr15 60572598 60572828 -40807693 + L1MC4 LINE L1 7358 7582 -460 2525 90 0 0 chr15 60572828 60573139 -40807382 + AluY SINE Alu 1 311 0 1951 193 64 46 chr15 60573139 60573234 -40807287 + L1MC4 LINE L1 7582 7674 -368 1034 181 0 0 chr15 60573234 60573400 -40807121 + FRAM SINE Alu 1 166 0 1951 193 64 46 chr15 60573400 60573634 -40806887 + L1MC4 LINE L1 7674 7928 -114 2201 78 51 7 chr15 60573643 60573937 -40806584 + AluSg1 SINE Alu 1 307 -2 465 81 0 35 chr15 60573941 60574028 -40806493 + (GGAA)n Simple_repeat Simple_repeat 2 85 0 234 116 0 0 chr15 60574029 60574072 -40806449 + (CAGG)n Simple_repeat Simple_repeat 1 43 0 2311 112 0 0 chr15 60574072 60574367 -40806154 + AluSx SINE Alu 8 302 -10 484 214 36 0 chr15 60574391 60574503 -40806018 + L1MC4 LINE L1 7921 8036 -6 883 182 0 7 chr15 60574631 60574779 -40805742 + FAM SINE Alu 12 158 -27 2561 63 0 0 chr15 60575100 60575400 -40805121 + AluY SINE Alu 1 300 -11 2341 86 3 7 chr15 60575678 60575980 -40804541 + AluSx SINE Alu 1 301 -11 456 288 98 38 chr15 60576697 60576881 -40803640 - MIR SINE MIR -20 242 48 820 187 66 28 chr15 60576980 60577162 -40803359 - MER5A DNA MER1_type 0 189 1 703 258 46 40 chr15 60577787 60578035 -40802486 - MIR SINE MIR -6 256 1 180 321 0 121 chr15 60578462 60578495 -40802026 - L2 LINE L2 -38 3275 3240 2226 76 45 7 chr15 60578495 60578786 -40801735 - AluSc SINE Alu -7 302 1 180 321 0 121 chr15 60578786 60578892 -40801629 - L2 LINE L2 -73 3240 3153 2175 111 0 3 chr15 60580113 60580402 -40800119 + AluSg SINE Alu 1 288 -22 2228 120 3 7 chr15 60580415 60580723 -40799798 + AluSx SINE Alu 1 307 -5 2058 121 4 0 chr15 60580723 60581003 -40799518 + AluSq SINE Alu 1 281 -32 240 35 0 0 chr15 60581005 60581034 -40799487 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 365 245 74 98 chr15 60581062 60581101 -40799420 - MIR SINE MIR -69 193 155 747 142 8 0 chr15 60581101 60581228 -40799293 - L1MB5 LINE L1 0 6174 6047 365 245 74 98 chr15 60581228 60581351 -40799170 - MIR SINE MIR -107 155 35 287 182 66 126 chr15 60582022 60582220 -40798301 + L1ME4a LINE L1 5936 6121 0 2118 146 10 0 chr15 60582220 60582529 -40797992 + AluSx SINE Alu 1 312 0 2246 98 3 7 chr15 60583307 60583602 -40796919 + AluSq SINE Alu 1 294 -19 194 88 0 29 chr15 60584330 60584364 -40796157 + (GGGA)n Simple_repeat Simple_repeat 2 34 0 230 278 153 0 chr15 60584612 60584684 -40795837 - MIR SINE MIR -75 187 105 2493 65 10 0 chr15 60585215 60585509 -40795012 - AluY SINE Alu -14 297 1 522 186 115 35 chr15 60585770 60585883 -40794638 + AluJb SINE Alu 129 250 -62 1612 146 74 26 chr15 60585885 60586276 -40794245 - Charlie1 DNA MER1_type -44 2717 2308 608 217 36 36 chr15 60586276 60586353 -40794168 - Charlie1 DNA MER1_type -2595 166 90 2031 127 37 0 chr15 60586353 60586653 -40793868 + AluSx SINE Alu 1 311 -1 608 217 36 36 chr15 60586653 60586741 -40793780 - Charlie1 DNA MER1_type -2670 91 1 507 269 6 32 chr15 60586759 60586915 -40793606 + L1MC/D LINE L1 5665 5816 -1992 2233 97 17 0 chr15 60587461 60587749 -40792772 + AluSp SINE Alu 1 293 -20 399 287 37 68 chr15 60588269 60588527 -40791994 + L1M4 LINE L1 4787 5031 -1115 1769 160 24 7 chr15 60588527 60588820 -40791701 + AluJo SINE Alu 6 303 -9 399 287 37 68 chr15 60588820 60588944 -40791577 + L1M4 LINE L1 5031 5157 -989 2118 128 0 3 chr15 60588945 60589259 -40791262 + AluSq SINE Alu 1 313 0 2331 67 7 3 chr15 60589334 60589618 -40790903 + AluSp SINE Alu 3 287 -26 2133 158 57 21 chr15 60589667 60590086 -40790435 - L1MB5 LINE L1 -8 6166 5733 463 238 54 71 chr15 60590225 60590335 -40790186 - MIR3 SINE MIR -27 181 72 1218 158 126 12 chr15 60590335 60590616 -40789905 + AluJo SINE Alu 1 310 0 463 238 54 71 chr15 60590616 60590672 -40789849 - MIR3 SINE MIR -136 72 17 384 240 58 10 chr15 60590961 60591065 -40789456 + MIR SINE MIR 70 178 -84 187 328 62 0 chr15 60591655 60591719 -40788802 - L2 LINE L2 -530 2784 2717 496 306 45 6 chr15 60591821 60591978 -40788543 - L2 LINE L2 0 3313 3151 206 204 45 0 chr15 60593065 60593109 -40787412 - MIR3 SINE MIR -6 202 157 184 308 138 31 chr15 60593201 60593331 -40787190 - L2 LINE L2 -2 3311 3168 845 103 9 0 chr15 60593355 60593471 -40787050 + FLAM_C SINE Alu 1 117 -16 196 317 50 0 chr15 60593567 60593627 -40786894 - L2 LINE L2 -257 3056 2994 269 356 48 14 chr15 60593946 60594092 -40786429 - MIR SINE MIR -77 185 35 238 284 181 9 chr15 60594700 60594816 -40785705 + MIR SINE MIR 119 254 -8 32 57 0 0 chr15 60595452 60595505 -40785016 + GC_rich Low_complexity Low_complexity 1 53 0 425 270 146 86 chr15 60595808 60596359 -40784162 - L1M2 LINE L1 -5440 1409 578 273 296 35 56 chr15 60598348 60598490 -40782031 + MIR SINE MIR 59 197 -65 2169 160 69 18 chr15 60598766 60599260 -40781261 - Charlie1b DNA MER1_type 0 523 5 196 290 89 42 chr15 60602132 60602301 -40778220 - MIR SINE MIR -63 145 19 1837 135 67 3 chr15 60602989 60603271 -40777250 - AluSg1 SINE Alu -9 300 1 881 76 0 54 chr15 60603302 60603487 -40777034 + (TTC)n Simple_repeat Simple_repeat 2 176 0 1993 132 21 0 chr15 60603489 60603778 -40776743 - AluSg SINE Alu -15 295 1 1687 192 20 3 chr15 60604403 60604700 -40775821 - AluJo SINE Alu 0 312 11 1786 252 137 66 chr15 60606874 60608074 -40772447 - HAL1 LINE L1 -85 2422 1085 1203 29 0 65 chr15 60608074 60608244 -40772277 - L1PA4 LINE L1 0 6155 5997 1786 252 137 66 chr15 60608244 60608611 -40771910 - HAL1 LINE L1 -1422 1085 745 315 239 39 89 chr15 60608877 60609057 -40771464 - HAL1 LINE L1 -2298 209 39 4476 203 110 48 chr15 60609583 60609809 -40770712 - L1MD3 LINE L1 0 8042 7831 2341 82 0 0 chr15 60609809 60610100 -40770421 - AluY SINE Alu -20 291 1 4476 203 110 48 chr15 60610100 60611473 -40769048 - L1MD3 LINE L1 -211 7831 6346 2177 92 7 0 chr15 60611591 60611874 -40768647 - AluSq SINE Alu -3 310 26 319 288 186 6 chr15 60612234 60612411 -40768110 - L1MD3 LINE L1 -2013 5795 5587 2072 113 19 23 chr15 60612802 60613111 -40767410 - AluSg SINE Alu -2 308 1 1931 107 48 14 chr15 60613686 60613840 -40766681 - AluSx SINE Alu -12 300 153 2633 49 0 0 chr15 60613840 60614144 -40766377 - AluY SINE Alu -7 304 1 1931 107 48 14 chr15 60614144 60614279 -40766242 - AluSx SINE Alu -159 153 1 2279 87 3 10 chr15 60614571 60614871 -40765650 + AluSc SINE Alu 1 298 -11 372 237 50 65 chr15 60616552 60616691 -40763830 + MIR3 SINE MIR 14 150 -58 498 233 47 0 chr15 60616858 60617008 -40763513 - L1MC/D LINE L1 -2006 5802 5646 534 200 0 0 chr15 60617576 60617671 -40762850 - AluJ SINE Alu -19 293 199 894 122 0 30 chr15 60617672 60617803 -40762718 - AluJ SINE Alu -185 127 1 459 323 77 14 chr15 60618830 60619050 -40761471 - MIR SINE MIR -6 256 23 1091 229 68 82 chr15 60620041 60620604 -40759917 - MLT1H1 LTR MaLR 0 555 1 28 61 0 0 chr15 60621677 60621726 -40758795 + AT_rich Low_complexity Low_complexity 1 49 0 480 269 194 0 chr15 60621942 60622117 -40758404 + MIR SINE MIR 49 257 -5 1902 144 0 7 chr15 60622533 60622825 -40757696 - AluJb SINE Alu -21 291 2 373 290 122 0 chr15 60622850 60622981 -40757540 - MIR3 SINE MIR -28 180 34 638 148 10 20 chr15 60624693 60624794 -40755727 - FLAM_A SINE Alu -42 100 1 954 168 5 11 chr15 60624939 60625124 -40755397 - L1MB5 LINE L1 -7 6167 5984 1799 162 0 20 chr15 60625478 60625781 -40754740 + AluJb SINE Alu 1 297 -15 390 115 0 0 chr15 60625877 60625938 -40754583 + (TCCC)n Simple_repeat Simple_repeat 4 64 0 1643 192 49 0 chr15 60625956 60626242 -40754279 - AluJb SINE Alu -12 300 1 1493 187 86 25 chr15 60626822 60627229 -40753292 - LTR37B LTR ERV1 -36 432 1 239 158 0 0 chr15 60627333 60627371 -40753150 - L2 LINE L2 -9 3304 3267 261 296 79 66 chr15 60627434 60627586 -40752935 - MER5B DNA MER1_type -1 177 24 307 199 103 32 chr15 60628670 60628826 -40751695 - L1MC5 LINE L1 -50 7911 7745 336 48 0 0 chr15 60630538 60630580 -40749941 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2035 125 4 0 chr15 60630581 60630860 -40749661 - AluSx SINE Alu -32 280 1 703 294 23 0 chr15 60631039 60631216 -40749305 - MIR SINE MIR -71 191 11 1998 76 0 24 chr15 60632245 60632495 -40748026 + AluY SINE Alu 50 293 -18 2194 108 3 3 chr15 60633317 60633613 -40746908 - AluSp SINE Alu -15 298 3 2065 71 11 4 chr15 60634173 60634439 -40746082 - AluY SINE Alu -7 304 37 22 0 0 0 chr15 60637538 60637560 -40742961 + AT_rich Low_complexity Low_complexity 1 22 0 413 138 174 0 chr15 60637871 60637980 -40742541 + MER3 DNA MER1_type 82 209 0 341 214 16 120 chr15 60638351 60638543 -40741978 + L1M4 LINE L1 4023 4194 -1952 207 236 0 36 chr15 60638953 60639008 -40741513 - MIR SINE MIR -3 259 207 490 236 25 94 chr15 60639335 60639557 -40740964 + Charlie7 DNA MER1_type 464 665 -1947 968 114 0 0 chr15 60639557 60639689 -40740832 + FLAM_C SINE Alu 1 132 -1 490 236 25 94 chr15 60639689 60639741 -40740780 + Charlie7 DNA MER1_type 665 719 -1893 247 184 34 75 chr15 60639739 60639886 -40740635 + Charlie7 DNA MER1_type 2422 2562 -50 * 700 153 4 8 chr15 60639948 60640095 -40740426 - LTR38B LTR ERV1 0 611 466 2113 136 0 3 chr15 60641317 60641625 -40738896 + AluJb SINE Alu 1 307 -5 1796 98 0 8 chr15 60642210 60642444 -40738077 - AluSx SINE Alu -78 234 3 297 170 0 16 chr15 60642448 60642512 -40738009 - FLAM SINE Alu -1 132 76 987 158 43 6 chr15 60642515 60642679 -40737842 - AluSq SINE Alu -9 304 135 7368 166 96 86 chr15 60642780 60643843 -40736678 - Charlie5 DNA MER1_type 0 2624 1573 2093 102 0 34 chr15 60643843 60644137 -40736384 - AluSc SINE Alu -25 284 1 7368 166 96 86 chr15 60644137 60644694 -40735827 - Charlie5 DNA MER1_type -1051 1573 1023 801 130 22 43 chr15 60644694 60644832 -40735689 + FLAM_C SINE Alu 1 135 -8 7368 166 96 86 chr15 60644832 60645620 -40734901 - Charlie5 DNA MER1_type -1601 1023 53 783 177 171 0 chr15 60649165 60649340 -40731181 + MER3 DNA MER1_type 1 205 -4 1274 146 8 65 chr15 60650895 60651071 -40729450 - AluSx SINE Alu -17 295 135 2240 129 0 0 chr15 60651071 60651382 -40729139 - AluSx SINE Alu -1 311 1 1274 146 8 65 chr15 60651382 60651451 -40729070 - AluSx SINE Alu -177 135 64 742 219 102 15 chr15 60652046 60652242 -40728279 + MIR SINE MIR 16 228 -34 415 209 80 133 chr15 60652294 60652409 -40728112 - MER58C DNA MER1_type -2207 213 114 2253 101 0 10 chr15 60652409 60652707 -40727814 + AluSx SINE Alu 1 295 -17 415 209 80 133 chr15 60652707 60652816 -40727705 - MER58C DNA MER1_type -2306 114 1 844 86 86 0 chr15 60652870 60652998 -40727523 + MER85 DNA T2_type 1 139 0 202 265 118 0 chr15 60653120 60653188 -40727333 - MIR SINE MIR -121 141 66 850 259 92 51 chr15 60654394 60654903 -40725618 - LTR67 LTR ERVL -9 548 19 494 224 141 28 chr15 60655031 60655321 -40725200 - MLT1J LTR MaLR -6 505 183 423 309 65 37 chr15 60657284 60657501 -40723020 - MIR SINE MIR 0 262 40 2364 100 0 0 chr15 60708533 60708842 -40671679 + AluSq SINE Alu 1 309 -4 39 38 0 0 chr15 60709176 60709229 -40671292 + AT_rich Low_complexity Low_complexity 1 53 0 2055 98 0 7 chr15 60709854 60710131 -40670390 + AluSx SINE Alu 1 275 -37 2135 113 0 0 chr15 60710371 60710678 -40669843 - AluSx SINE Alu 0 307 1 220 289 90 87 chr15 60711084 60711350 -40669171 - L2 LINE L2 -20 3252 2986 2238 112 0 13 chr15 60711708 60712013 -40668508 - AluSx SINE Alu -11 301 1 2084 116 0 7 chr15 60712156 60712449 -40668072 - AluSx SINE Alu -21 291 1 278 258 193 69 chr15 60712665 60712898 -40667623 - MIR SINE MIR 0 262 1 503 260 187 0 chr15 60713199 60713349 -40667172 + MER5A DNA MER1_type 9 186 -3 1905 90 11 4 chr15 60713871 60714138 -40666383 - AluSq SINE Alu -15 298 30 2262 113 0 0 chr15 60714647 60714949 -40665572 - AluSc SINE Alu -7 302 1 14311 117 25 22 chr15 60715090 60717496 -40663025 - Tigger1 DNA MER2_type -5 2413 1 2410 72 0 3 chr15 60718002 60718295 -40662226 - AluY SINE Alu -19 292 1 315 317 187 4 chr15 60718434 60718664 -40661857 + L1MC/D LINE L1 4342 4613 -1533 2357 80 0 0 chr15 60718702 60719001 -40661520 - AluSc SINE Alu -10 299 1 280 171 211 0 chr15 60719063 60719139 -40661382 + L1MC/D LINE L1 4744 4835 -1311 366 319 49 6 chr15 60719153 60719316 -40661205 - L1M4 LINE L1 -3516 2866 2697 331 334 120 55 chr15 60719357 60719923 -40660598 - L1M4 LINE L1 -4890 1494 892 432 259 87 11 chr15 60721103 60721367 -40659154 + L1MC/D LINE L1 5268 5543 -611 257 170 0 0 chr15 60721852 60721899 -40658622 - L1ME2 LINE L1 -10 6154 6108 803 204 0 0 chr15 60721909 60722051 -40658470 - FLAM_C SINE Alu -1 142 1 359 191 92 84 chr15 60722057 60722188 -40658333 - L1ME2 LINE L1 -67 6097 5966 588 200 37 7 chr15 60722189 60722324 -40658197 - L1ME2 LINE L1 -478 5686 5548 920 197 7 109 chr15 60722327 60722601 -40657920 - L2 LINE L2 -853 2461 2216 2406 87 0 0 chr15 60722681 60722979 -40657542 - AluSx SINE Alu -14 298 1 808 249 82 67 chr15 60724400 60724741 -40655780 - L2 LINE L2 -19 3294 2949 2038 114 14 4 chr15 60724890 60725201 -40655320 + AluSx SINE Alu 1 314 0 1225 134 0 0 chr15 60725389 60725560 -40654961 + AluSp SINE Alu 136 306 -7 2081 123 32 0 chr15 60725642 60725926 -40654595 - AluSx SINE Alu -19 293 1 39 68 0 0 chr15 60725933 60726007 -40654514 + AT_rich Low_complexity Low_complexity 1 74 0 21 57 0 0 chr15 60726045 60726080 -40654441 + AT_rich Low_complexity Low_complexity 1 35 0 342 113 0 0 chr15 60726123 60726174 -40654347 + FAM SINE Alu 46 96 -79 511 50 25 25 chr15 60726174 60726254 -40654267 - MER4C LTR ERV1 0 465 386 345 86 35 0 chr15 60726314 60726372 -40654149 + AluSp/q SINE Alu 240 299 -4 * 2857 119 87 15 chr15 60726369 60726899 -40653622 - MER4B LTR ERV1 -42 568 1 2113 134 20 3 chr15 60726901 60727251 -40653270 - MER4C LTR ERV1 -109 356 1 250 176 0 20 chr15 60727251 60727301 -40653220 + FAM SINE Alu 93 141 -25 1454 125 17 8 chr15 60727302 60727542 -40652979 - MER50 LTR ERV1 -444 290 49 341 239 109 104 chr15 60728371 60728572 -40651949 - L1ME3A LINE L1 -3 6159 5958 711 226 102 22 chr15 60728657 60729019 -40651502 - L1MC5 LINE L1 -437 7524 7134 1894 94 127 25 chr15 60729019 60729380 -40651141 - LTR14B LTR ERVK 0 608 211 253 64 21 43 chr15 60729368 60729415 -40651106 - LTR14B LTR ERVK -562 46 1 * 645 186 57 40 chr15 60729418 60729595 -40650926 - L1MC5 LINE L1 -823 7138 6959 2107 123 0 3 chr15 60729607 60729912 -40650609 + AluSq SINE Alu 1 304 0 934 271 11 47 chr15 60729980 60730342 -40650179 - L1MC4a LINE L1 -900 6908 6560 1892 137 7 29 chr15 60730628 60730934 -40649587 - AluJo SINE Alu -13 299 1 662 279 107 47 chr15 60730956 60731594 -40648927 - HAL1b LINE L1 -613 735 60 446 123 62 0 chr15 60731776 60731857 -40648664 - AluSg/x SINE Alu -10 302 217 228 304 61 40 chr15 60732978 60733126 -40647395 + L1ME LINE L1 5522 5672 -449 675 209 0 31 chr15 60733202 60733331 -40647190 + FLAM_A SINE Alu 1 125 -8 2354 94 0 0 chr15 60734225 60734523 -40645998 + AluSg SINE Alu 2 299 -11 2081 147 6 13 chr15 60734665 60734979 -40645542 + AluSx SINE Alu 1 312 0 255 194 111 28 chr15 60735968 60736040 -40644481 - MIR SINE MIR -66 196 119 630 282 134 18 chr15 60736042 60736319 -40644202 - L2 LINE L2 -2 3311 3003 1574 193 18 7 chr15 60736433 60736718 -40643803 - AluJo SINE Alu -7 305 18 277 286 0 0 chr15 60736719 60736789 -40643732 - MER91A DNA MER1_type -118 78 9 242 350 146 24 chr15 60737188 60737311 -40643210 - L2 LINE L2 -8 3264 3127 398 263 70 90 chr15 60737876 60738045 -40642476 - L1ME4a LINE L1 -112 6009 5838 1963 163 0 0 chr15 60738045 60738339 -40642182 - AluJb SINE Alu -17 295 2 398 263 70 90 chr15 60738339 60738526 -40641995 - L1ME4a LINE L1 -283 5838 5660 261 221 177 39 chr15 60738528 60738709 -40641812 - L1ME4a LINE L1 -2262 5546 5341 201 74 0 0 chr15 60740373 60740400 -40640121 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1850 127 59 35 chr15 60740762 60741102 -40639419 - MER7A DNA MER2_type 0 346 1 1510 197 3 23 chr15 60741280 60741580 -40638941 - AluJb SINE Alu -16 296 3 2036 149 0 0 chr15 60744000 60744288 -40636233 - AluSx SINE Alu -24 288 1 189 171 0 0 chr15 60744535 60744570 -40635951 + (TG)n Simple_repeat Simple_repeat 2 36 0 2257 115 0 0 chr15 60744759 60745054 -40635467 - AluSx SINE Alu -17 295 1 215 290 32 54 chr15 60745326 60745419 -40635102 + L2 LINE L2 2229 2319 -995 214 374 72 56 chr15 60745463 60745658 -40634863 + L2 LINE L2 2999 3196 -76 1509 223 30 9 chr15 60745920 60746383 -40634138 + L1M4 LINE L1 2863 3335 -2811 9421 168 118 16 chr15 60746390 60748027 -40632494 + L1MB7 LINE L1 15 1483 -6082 327 25 0 0 chr15 60748027 60748067 -40632454 + (GA)n Simple_repeat Simple_repeat 1 40 0 * 495 0 0 0 chr15 60748066 60748121 -40632400 + (CA)n Simple_repeat Simple_repeat 2 56 0 9421 168 118 16 chr15 60748067 60748669 -40631852 + L1MB7 LINE L1 1483 2426 -5139 2310 106 0 10 chr15 60748669 60748981 -40631540 + AluSc SINE Alu 1 309 0 9421 168 118 16 chr15 60748981 60749102 -40631419 + L1MB7 LINE L1 2426 2533 -5032 7585 185 39 29 chr15 60749101 60750638 -40629883 + L1MB7 LINE L1 4915 6436 -1167 * 1821 95 72 4 chr15 60750638 60750901 -40629620 + AluSq SINE Alu 14 294 -19 2372 86 0 0 chr15 60750905 60751206 -40629315 + AluSg SINE Alu 1 301 -9 7585 185 39 29 chr15 60751206 60752021 -40628500 + L1MB7 LINE L1 6438 7296 -307 1944 163 3 0 chr15 60752021 60752322 -40628199 + AluSx SINE Alu 1 302 -10 2065 128 3 0 chr15 60752508 60752797 -40627724 + AluSx SINE Alu 13 302 -10 884 186 40 25 chr15 60752797 60752996 -40627525 + L1MB7 LINE L1 7383 7584 -19 1660 241 77 22 chr15 60753424 60753960 -40626561 - L1MD3 LINE L1 -2 7993 7429 776 254 22 13 chr15 60754046 60754278 -40626243 - HAL1 LINE L1 -892 1615 1382 852 115 15 0 chr15 60754313 60754443 -40626078 + AluSq/x SINE Alu 1 132 -181 427 177 23 6 chr15 60754444 60754619 -40625902 + (TA)n Simple_repeat Simple_repeat 2 179 0 1647 238 236 55 chr15 60754652 60755086 -40625435 - HAL1 LINE L1 -1222 1285 931 2302 85 7 3 chr15 60755086 60755380 -40625141 + AluSx SINE Alu 1 295 -17 1647 238 236 55 chr15 60755380 60755932 -40624589 - HAL1 LINE L1 -1576 931 120 335 309 49 8 chr15 60756246 60756369 -40624152 - MIR3 SINE MIR 0 208 81 441 295 71 104 chr15 60756380 60756437 -40624084 + L2 LINE L2 2942 2999 -273 1702 63 0 0 chr15 60756437 60756660 -40623861 - L1PA4 LINE L1 -2 6153 5931 441 295 71 104 chr15 60756660 60756938 -40623583 + L2 LINE L2 2999 3266 -6 1635 189 0 26 chr15 60757799 60758111 -40622410 - AluJo SINE Alu -6 306 3 2121 130 7 3 chr15 60758122 60758422 -40622099 - AluJo SINE Alu -11 301 1 2017 126 3 0 chr15 60759692 60759977 -40620544 + AluSx SINE Alu 1 286 -26 438 223 9 0 chr15 60760762 60760874 -40619647 + L1ME LINE L1 5691 5803 -318 959 231 152 53 chr15 60761119 60761513 -40619008 - L1MD3 LINE L1 0 8042 7623 1671 152 35 35 chr15 60761530 60761820 -40618701 - AluJo SINE Alu -22 290 1 2272 98 0 10 chr15 60761945 60762252 -40618269 - AluSq SINE Alu -9 304 1 605 306 83 33 chr15 60763049 60763470 -40617051 + L2 LINE L2 1932 2373 -941 460 256 83 8 chr15 60763720 60763841 -40616680 + L2 LINE L2 3184 3313 0 2314 108 0 0 chr15 60764691 60764997 -40615524 - AluSg SINE Alu -4 306 1 521 303 82 33 chr15 60765068 60765556 -40614965 - L1 LINE L1 -2412 3734 3223 2083 125 0 0 chr15 60765711 60765992 -40614529 + AluSx SINE Alu 1 281 -31 202 296 0 0 chr15 60767447 60767501 -40613020 + A-rich Low_complexity Low_complexity 1 54 0 244 278 56 28 chr15 60768287 60768359 -40612162 - MER20B DNA MER1_type -613 170 97 276 109 0 43 chr15 60768366 60768412 -40612109 + tRNA-Cys-TGC tRNA tRNA 3 46 -29 1937 142 9 19 chr15 60769077 60769545 -40610976 - MER44D DNA MER2_type -1 604 9 2046 140 0 16 chr15 60769827 60770142 -40610379 + AluSx SINE Alu 1 310 -2 2263 88 3 10 chr15 60770445 60770751 -40609770 - AluSx SINE Alu -8 304 1 1078 144 6 17 chr15 60771725 60771899 -40608622 + FRAM SINE Alu 1 172 -4 1688 261 124 25 chr15 60772043 60772983 -40607538 + L2 LINE L2 2273 3307 -6 926 312 109 38 chr15 60773567 60773867 -40606654 + L3 LINE CR1 900 1248 -329 369 0 0 0 chr15 60773867 60773908 -40606613 + (TG)n Simple_repeat Simple_repeat 2 42 0 926 312 109 38 chr15 60773908 60774085 -40606436 + L3 LINE CR1 1248 1411 -166 2101 95 6 57 chr15 60774105 60774420 -40606101 - AluSx SINE Alu -13 299 1 443 306 110 10 chr15 60776727 60776936 -40603585 - MIR SINE MIR -20 242 13 2413 68 7 3 chr15 60777145 60777454 -40603067 + AluSg SINE Alu 1 310 0 918 196 16 0 chr15 60777865 60778049 -40602472 - MER5A DNA MER1_type -2 187 1 22 80 0 0 chr15 60778122 60778172 -40602349 + AT_rich Low_complexity Low_complexity 1 50 0 663 333 110 43 chr15 60779368 60779876 -40600645 + L2 LINE L2 2211 2752 -562 202 357 0 0 chr15 60780195 60780265 -40600256 + MIR SINE MIR 45 114 -94 1688 148 70 0 chr15 60780668 60780939 -40599582 - AluJo SINE Alu -22 290 1 1293 265 78 17 chr15 60780955 60781541 -40598980 + L2 LINE L2 2698 3313 0 219 319 76 17 chr15 60781962 60782081 -40598440 + L2 LINE L2 2925 3050 -222 382 263 23 38 chr15 60782405 60782538 -40597983 + MIR SINE MIR 86 216 -46 1720 115 16 80 chr15 60782681 60782993 -40597528 + AluJb SINE Alu 1 292 -20 2343 107 0 0 chr15 60784034 60784344 -40596177 - AluSx SINE Alu -2 310 1 22 0 0 0 chr15 60785740 60785762 -40594759 + AT_rich Low_complexity Low_complexity 1 22 0 1980 125 7 16 chr15 60785938 60786241 -40594280 - AluJo SINE Alu -7 305 6 1247 186 147 8 chr15 60786574 60786832 -40593689 + AluJo SINE Alu 1 294 -8 2556 60 0 0 chr15 60786957 60787256 -40593265 + AluY SINE Alu 5 303 -8 1755 131 9 95 chr15 60788048 60788385 -40592136 - AluJb SINE Alu -4 308 1 2315 88 0 20 chr15 60788862 60789167 -40591354 - AluSg SINE Alu -11 299 1 353 223 32 53 chr15 60789250 60789344 -40591177 - MIR SINE MIR -10 252 161 1200 176 62 0 chr15 60790424 60790634 -40589887 + MER58A DNA MER1_type 2 224 0 313 258 124 0 chr15 60790843 60790932 -40589589 + MIR3 SINE MIR 95 194 -14 26 30 0 0 chr15 60791002 60791035 -40589486 + AT_rich Low_complexity Low_complexity 1 33 0 474 61 0 0 chr15 60791337 60791403 -40589118 - Alu SINE Alu -8 304 239 372 301 11 0 chr15 60791752 60791883 -40588638 + L1ME3A LINE L1 5774 5883 -287 2146 125 0 7 chr15 60793631 60793935 -40586586 - AluSq SINE Alu -11 302 1 756 194 0 0 chr15 60793991 60794125 -40586396 + L1MD3 LINE L1 7146 7279 -716 632 220 28 7 chr15 60794125 60794266 -40586255 + MLT1F1 LTR MaLR 5 148 -419 2505 139 68 55 chr15 60794266 60794314 -40586207 + L1MD3 LINE L1 7425 7471 -524 2484 82 0 0 chr15 60794314 60794618 -40585903 + AluSq SINE Alu 1 304 -9 2505 139 68 55 chr15 60794618 60795117 -40585404 + L1MD3 LINE L1 7471 7979 -16 21 0 0 0 chr15 60795117 60795138 -40585383 + AT_rich Low_complexity Low_complexity 1 21 0 419 308 52 43 chr15 60795316 60795527 -40584994 - MIR SINE MIR -45 217 5 2404 72 0 7 chr15 60796382 60796686 -40583835 + AluSx SINE Alu 1 302 -10 1789 178 0 3 chr15 60796733 60797025 -40583496 + AluJb SINE Alu 1 291 -21 22 70 0 0 chr15 60797025 60797068 -40583453 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr15 60797435 60797472 -40583049 + AT_rich Low_complexity Low_complexity 1 37 0 204 233 0 0 chr15 60798024 60798067 -40582454 + GA-rich Low_complexity Low_complexity 1 43 0 1923 123 11 0 chr15 60798685 60798954 -40581567 - AluSx SINE Alu -40 272 1 669 178 15 15 chr15 60799956 60800091 -40580430 - L1MB4 LINE L1 -6 6174 6040 2140 140 0 0 chr15 60800361 60800669 -40579852 - AluSx SINE Alu -4 308 1 511 232 124 41 chr15 60800751 60800966 -40579555 + MIR SINE MIR 6 230 -32 21 0 0 0 chr15 60801313 60801334 -40579187 + AT_rich Low_complexity Low_complexity 1 21 0 2333 94 3 13 chr15 60801663 60801971 -40578550 - AluSx SINE Alu -7 305 1 257 208 0 0 chr15 60802861 60802909 -40577612 - L2 LINE L2 -580 2734 2687 1656 278 158 38 chr15 60803202 60804348 -40576173 + L2 LINE L2 2013 3313 0 2297 117 0 0 chr15 60804362 60804662 -40575859 - AluSg SINE Alu -10 300 1 682 345 95 43 chr15 60804662 60805308 -40575213 + L2 LINE L2 2590 3267 -5 393 199 53 38 chr15 60805665 60805796 -40574725 + L1MD3 LINE L1 7862 7994 -1 1456 198 45 50 chr15 60805807 60806185 -40574336 - MER68 LTR ERV1 -186 376 1 4116 211 87 34 chr15 60806199 60806885 -40573636 - HERVL68 LTR ERVL -19 3018 2369 2323 100 0 3 chr15 60806885 60807194 -40573327 - AluSx SINE Alu -4 308 1 4116 211 87 34 chr15 60807194 60807789 -40572732 - HERVL68 LTR ERVL -668 2369 1670 1187 202 60 17 chr15 60807789 60808091 -40572430 - HERVL68 LTR ERVL -1484 1553 1239 801 201 6 24 chr15 60808106 60808270 -40572251 + FRAM SINE Alu 1 161 -15 2084 167 35 80 chr15 60808271 60808754 -40571767 - HERVL68 LTR ERVL -1804 1233 783 2080 157 0 0 chr15 60808754 60809066 -40571455 - AluSx SINE Alu 0 312 1 2084 167 35 80 chr15 60809066 60809204 -40571317 - HERVL68 LTR ERVL -2254 783 640 770 169 0 8 chr15 60809297 60809427 -40571094 - FLAM_C SINE Alu -10 133 5 1078 248 47 52 chr15 60809428 60809815 -40570706 - HERVL68 LTR ERVL -2631 406 22 383 318 23 47 chr15 60809654 60809868 -40570653 - MER68-int LTR ERV1 -3965 226 18 * 1460 236 54 68 chr15 60809885 60810418 -40570103 - MER68 LTR ERV1 -3 559 34 1811 169 18 0 chr15 60810428 60810700 -40569821 + AluJo SINE Alu 6 282 -30 291 28 0 0 chr15 60810712 60810748 -40569773 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 338 198 40 69 chr15 60812312 60812413 -40568108 - L1MEd LINE L1 -5660 459 362 576 299 95 14 chr15 60812885 60813096 -40567425 - MIR SINE MIR 0 262 35 573 150 14 143 chr15 60814725 60814872 -40565649 - MER46A DNA MER2_type -108 128 1 * 945 148 0 19 chr15 60814872 60814968 -40565553 + MER46A DNA MER2_type 144 236 0 2223 123 7 0 chr15 60815136 60815445 -40565076 - AluSx SINE Alu -1 311 1 2081 134 7 0 chr15 60815718 60816016 -40564505 + AluSx SINE Alu 1 300 -12 846 204 61 0 chr15 60816370 60816551 -40563970 + MER58A DNA MER1_type 33 224 0 24 0 0 0 chr15 60817668 60817692 -40562829 + AT_rich Low_complexity Low_complexity 1 24 0 2207 108 0 0 chr15 60817901 60818187 -40562334 + AluSx SINE Alu 7 292 -20 22 0 0 0 chr15 60818221 60818243 -40562278 + AT_rich Low_complexity Low_complexity 1 22 0 569 205 36 9 chr15 60818348 60818460 -40562061 - L2 LINE L2 -4 3309 3195 221 311 0 0 chr15 60818461 60818522 -40561999 + CT-rich Low_complexity Low_complexity 3 63 0 22 0 0 0 chr15 60818689 60818711 -40561810 + AT_rich Low_complexity Low_complexity 1 22 0 381 269 60 60 chr15 60819511 60819693 -40560828 - MIR3 SINE MIR -8 200 19 435 275 67 11 chr15 60820194 60820372 -40560149 - MER5A DNA MER1_type -1 188 1 1544 165 6 68 chr15 60820513 60820697 -40559824 - AluJo SINE Alu 0 312 155 2343 102 0 3 chr15 60820697 60821000 -40559521 - AluSp SINE Alu -11 302 1 1544 165 6 68 chr15 60821000 60821136 -40559385 - AluJo SINE Alu -157 155 12 252 237 0 34 chr15 60821922 60821981 -40558540 + L2 LINE L2 3194 3250 -63 2686 216 50 16 chr15 60822586 60823410 -40557111 - L1MEc LINE L1 -3086 3129 2278 207 0 0 0 chr15 60823411 60823434 -40557087 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1287 160 47 5 chr15 60823437 60823650 -40556871 - AluJb SINE Alu -30 282 61 748 197 64 9 chr15 60823651 60823869 -40556652 - L1MEc LINE L1 -4074 2322 2093 423 205 13 0 chr15 60823869 60823947 -40556574 - Tigger2a DNA MER2_type 0 444 366 1199 144 5 5 chr15 60823947 60824148 -40556373 - Tigger2a DNA MER2_type -233 201 1 497 291 19 19 chr15 60824150 60824360 -40556161 - L1MEc LINE L1 -4307 2089 1880 * 558 226 25 20 chr15 60824358 60824562 -40555959 - L1MEc LINE L1 -5239 1157 953 3235 203 12 8 chr15 60824570 60825210 -40555311 + MER82 DNA MER2_type 2 644 -9 229 118 0 0 chr15 60825285 60825319 -40555202 - AluJo SINE Alu -269 34 1 2148 92 3 14 chr15 60826374 60826668 -40553853 - AluSc SINE Alu -18 291 1 376 260 53 65 chr15 60828118 60828169 -40552352 - MIR SINE MIR 0 262 212 1738 166 3 17 chr15 60828169 60828464 -40552057 + AluJo SINE Alu 10 300 -12 376 260 53 65 chr15 60828464 60828581 -40551940 - MIR SINE MIR -50 212 96 2056 145 0 3 chr15 60831656 60831967 -40548554 - AluSx SINE Alu -2 310 1 1662 191 7 10 chr15 60832451 60832750 -40547771 + AluJo SINE Alu 1 298 -14 1093 258 50 32 chr15 60833973 60834639 -40545882 + L1ME3A LINE L1 4762 5433 -737 623 104 10 0 chr15 60834647 60834743 -40545778 + FLAM_C SINE Alu 39 135 -8 2289 206 84 13 chr15 60834754 60835385 -40545136 + L1ME3A LINE L1 5428 6103 -67 2174 132 0 0 chr15 60836629 60836932 -40543589 - AluSx SINE Alu -9 303 1 2149 93 0 51 chr15 60837121 60837433 -40543088 - AluSx SINE Alu -16 296 1 1020 221 135 7 chr15 60838160 60838463 -40542058 - MER2 DNA MER2_type 0 344 3 1952 116 35 11 chr15 60838562 60838846 -40541675 - AluSx SINE Alu -21 291 1 1932 152 10 0 chr15 60838975 60839265 -40541256 + AluSx SINE Alu 1 293 -19 1914 144 4 0 chr15 60839855 60840168 -40540353 - AluSg SINE Alu 0 314 1 883 200 0 24 chr15 60841342 60841507 -40539014 + AluJb SINE Alu 136 296 -16 1733 102 126 12 chr15 60841527 60841804 -40538717 - AluSx SINE Alu 0 306 1 2264 72 0 0 chr15 60842536 60842852 -40537669 - AluSc SINE Alu 0 316 1 302 286 101 8 chr15 60843075 60843194 -40537327 - L1MC4a LINE L1 -1628 6180 6051 802 242 10 0 chr15 60843882 60844076 -40536445 - L1PB4 LINE L1 -18 6138 5943 377 127 0 0 chr15 60844078 60844141 -40536380 - L1M1 LINE L1 -776 5527 5465 * 3425 117 4 15 chr15 60844138 60844635 -40535886 - L1PB4 LINE L1 -226 5930 5438 2236 110 3 25 chr15 60844635 60844952 -40535569 - AluSx SINE Alu -2 310 1 3425 117 4 15 chr15 60844952 60845044 -40535477 - L1PB4 LINE L1 -718 5438 5346 2178 108 0 25 chr15 60845065 60845405 -40535116 - AluSg SINE Alu 0 332 1 415 293 61 6 chr15 60847458 60847639 -40532882 - Charlie8 DNA MER1_type -2217 200 10 681 286 30 30 chr15 60848984 60849183 -40531338 - MIR3 SINE MIR -5 203 5 2056 148 0 3 chr15 60849286 60849583 -40530938 + AluSx SINE Alu 1 296 -16 22 35 0 0 chr15 60850228 60850257 -40530264 + AT_rich Low_complexity Low_complexity 1 29 0 1271 180 16 4 chr15 60851115 60851371 -40529150 + L1MD3 LINE L1 7729 7987 -8 1546 177 61 18 chr15 60852394 60852721 -40527800 - MER7A DNA MER2_type -1 345 7 458 256 0 0 chr15 60852762 60852848 -40527673 - MIR3 SINE MIR -47 161 76 21 36 0 0 chr15 60854236 60854264 -40526257 + AT_rich Low_complexity Low_complexity 1 28 0 567 298 30 30 chr15 60855011 60855246 -40525275 + MIR SINE MIR 17 251 -11 2253 118 0 0 chr15 60855354 60855651 -40524870 + AluSx SINE Alu 1 297 -15 2126 124 0 29 chr15 60856576 60856891 -40523630 + AluJo SINE Alu 1 306 -6 325 291 99 58 chr15 60859030 60859178 -40521343 + L1M4 LINE L1 2895 3036 -3110 1268 187 56 39 chr15 60859178 60859462 -40521059 + AluJo SINE Alu 1 289 -23 325 291 99 58 chr15 60859462 60859522 -40520999 + L1M4 LINE L1 3036 3092 -3054 1701 179 16 3 chr15 60859522 60859829 -40520692 + AluJb SINE Alu 1 311 -1 325 291 99 58 chr15 60859829 60859908 -40520613 + L1M4 LINE L1 3092 3166 -2980 874 150 0 8 chr15 60859908 60860041 -40520480 - FLAM_C SINE Alu -1 132 1 325 291 99 58 chr15 60860041 60860146 -40520375 + L1M4 LINE L1 3166 3305 -2841 958 203 0 11 chr15 60860151 60860328 -40520193 + FAM SINE Alu 1 175 0 2810 179 34 17 chr15 60860356 60860947 -40519574 + L1MB5 LINE L1 5566 6166 -8 439 111 0 0 chr15 60860956 60861028 -40519493 - AluSq SINE Alu -9 304 233 1139 121 0 0 chr15 60861028 60861177 -40519344 - AluSq SINE Alu -163 149 1 38 18 0 18 chr15 60861179 60861205 -40519316 + AT_rich Low_complexity Low_complexity 1 26 -29 2086 129 0 0 chr15 60861205 60861492 -40519029 - AluSx SINE Alu -25 287 1 38 18 0 18 chr15 60861492 60861521 -40519000 + AT_rich Low_complexity Low_complexity 26 55 0 690 185 0 0 chr15 60861654 60861762 -40518759 + FAM SINE Alu 1 108 -77 1279 151 27 13 chr15 60861800 60862025 -40518496 + AluJb SINE Alu 84 311 -1 1478 96 10 0 chr15 60862669 60862866 -40517655 + AluSq SINE Alu 1 199 -114 467 65 0 0 chr15 60862866 60862928 -40517593 + AluSq SINE Alu 239 300 -11 1850 133 7 18 chr15 60863123 60863445 -40517076 + AluSx SINE Alu 1 319 0 760 281 46 9 chr15 60863605 60863822 -40516699 + MIR SINE MIR 38 262 0 2351 55 3 3 chr15 60863904 60864194 -40516327 + AluY SINE Alu 1 290 -21 638 186 24 8 chr15 60864834 60864958 -40515563 - MER46A DNA MER2_type -63 173 48 349 274 57 9 chr15 60865824 60865930 -40514591 + MIR3 SINE MIR 87 197 -11 2536 170 18 7 chr15 60866280 60866733 -40513788 - MER21B LTR ERV1 -49 814 357 4200 106 3 2 chr15 60866733 60867364 -40513157 + MER41B LTR ERV1 1 632 -3 1716 199 24 37 chr15 60867364 60867402 -40513119 - MER21B LTR ERV1 -505 358 321 4419 67 2 0 chr15 60867402 60867955 -40512566 + MER41A LTR ERV1 1 554 0 1716 199 24 37 chr15 60867955 60868279 -40512242 - MER21B LTR ERV1 -542 321 1 2191 133 0 0 chr15 60868395 60868695 -40511826 + AluSx SINE Alu 5 304 -8 4761 51 8 2 chr15 60869201 60869788 -40510733 - LTR10C LTR ERV1 0 591 1 26 30 0 0 chr15 60869793 60869826 -40510695 + AT_rich Low_complexity Low_complexity 1 33 0 1757 177 61 160 chr15 60870025 60870109 -40510412 + LTR8A LTR ERV1 34 125 -602 3831 111 46 3 chr15 60870109 60870694 -40509827 - MER4B LTR ERV1 0 610 1 1757 177 61 160 chr15 60870694 60871379 -40509142 + LTR8A LTR ERV1 125 727 0 211 321 12 37 chr15 60871491 60871572 -40508949 - MIR SINE MIR -114 94 16 181 233 0 33 chr15 60871622 60871682 -40508839 - MER5A DNA MER1_type -21 168 111 2102 147 3 10 chr15 60872826 60873140 -40507381 + AluJb SINE Alu 1 312 0 1502 161 59 53 chr15 60873462 60873766 -40506755 + AluJb SINE Alu 1 306 -6 310 348 22 7 chr15 60873933 60874068 -40506453 + L2 LINE L2 2851 2987 -285 283 342 79 7 chr15 60874162 60874314 -40506207 + L2 LINE L2 3021 3183 -130 2493 236 60 19 chr15 60874424 60875110 -40505411 + MER21B LTR ERV1 98 811 -52 328 341 57 24 chr15 60875130 60875253 -40505268 + L2 LINE L2 3141 3267 -5 514 251 137 14 chr15 60875409 60875628 -40504893 + L2 LINE L2 2150 2395 -919 217 211 211 44 chr15 60876445 60876535 -40503986 - MIR SINE MIR 0 262 158 1618 163 83 7 chr15 60876535 60876812 -40503709 + AluJo SINE Alu 1 298 -14 582 200 87 27 chr15 60876842 60876992 -40503529 - MIR SINE MIR -102 160 2 929 195 0 6 chr15 60877025 60877194 -40503327 - FRAM SINE Alu -8 168 1 2785 188 66 96 chr15 60877389 60877911 -40502610 + L1ME1 LINE L1 4656 5192 -1142 2371 65 10 3 chr15 60877911 60878203 -40502318 + AluSq SINE Alu 1 294 -19 2785 188 66 96 chr15 60878203 60879263 -40501258 + L1ME1 LINE L1 5192 6332 -2 1754 193 13 0 chr15 60879272 60879577 -40500944 + AluJo SINE Alu 1 309 -3 752 171 16 0 chr15 60879773 60879902 -40500619 - FAM SINE Alu -8 41 1 221 267 13 27 chr15 60879912 60879987 -40500534 + L2 LINE L2 2979 3052 -220 1827 98 94 0 chr15 60880397 60880653 -40499868 - AluSg SINE Alu -30 280 1 314 320 80 10 chr15 60881001 60881201 -40499320 + LTR33 LTR ERVL 243 456 -65 1850 164 7 0 chr15 60881913 60882193 -40498328 - AluJo SINE Alu -30 282 1 860 143 21 29 chr15 60883444 60883584 -40496937 - FLAM_C SINE Alu -4 139 1 341 196 62 0 chr15 60883585 60883682 -40496839 + L1MC4a LINE L1 5730 5832 -1976 1173 184 28 14 chr15 60883730 60884018 -40496503 + L1MB4 LINE L1 5596 5887 -293 1248 286 75 36 chr15 60884270 60885068 -40495453 + L1MC4 LINE L1 7214 8042 0 2426 78 0 0 chr15 60885136 60885443 -40495078 + AluY SINE Alu 1 307 -4 575 223 10 100 chr15 60886320 60886629 -40493892 + L1M4 LINE L1 4404 4684 -1462 351 0 0 0 chr15 60886920 60886959 -40493562 + (CA)n Simple_repeat Simple_repeat 2 40 0 2189 103 30 0 chr15 60887396 60887698 -40492823 + AluSq SINE Alu 3 313 0 250 214 22 56 chr15 60887757 60887846 -40492675 + L1ME4a LINE L1 5954 6039 -82 1865 138 10 43 chr15 60888073 60888378 -40492143 - AluSx SINE Alu -17 295 1 251 222 83 14 chr15 60888565 60888637 -40491884 + MIR3 SINE MIR 119 195 -13 815 226 119 58 chr15 60888889 60889115 -40491406 + MIR SINE MIR 2 241 -21 2542 96 14 6 chr15 60889340 60889706 -40490815 - THE1C LTR MaLR -4 371 3 453 206 137 0 chr15 60889781 60889912 -40490609 + MER103 DNA DNA 9 157 -9 1687 200 71 92 chr15 60890419 60891042 -40489479 + L1MC5 LINE L1 7137 7741 -220 1987 133 0 0 chr15 60891042 60891327 -40489194 + AluSx SINE Alu 1 285 -27 1687 200 71 92 chr15 60891327 60891492 -40489029 + L1MC5 LINE L1 7741 7908 -53 35 0 0 0 chr15 60891768 60891803 -40488718 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr15 60892113 60892134 -40488387 + AT_rich Low_complexity Low_complexity 1 21 0 615 234 104 35 chr15 60893435 60893572 -40486949 + MIR SINE MIR 48 205 -57 889 149 17 0 chr15 60893572 60893746 -40486775 + L1MA8 LINE L1 6115 6291 0 615 234 104 35 chr15 60893746 60893809 -40486712 + MIR SINE MIR 205 262 0 716 202 16 0 chr15 60894295 60894424 -40486097 - FLAM_A SINE Alu -2 131 1 273 126 53 116 chr15 60894879 60894922 -40485599 - L1MB3 LINE L1 -8 6175 6140 2438 50 3 10 chr15 60894922 60895220 -40485301 - AluY SINE Alu -15 296 1 273 126 53 116 chr15 60895220 60895271 -40485250 - L1MB3 LINE L1 -43 6140 6087 294 333 61 0 chr15 60895296 60895410 -40485111 - MIR SINE MIR -119 143 23 400 288 72 45 chr15 60895999 60896291 -40484230 + L2 LINE L2 2165 2464 -850 350 209 100 27 chr15 60896291 60896401 -40484120 + L2 LINE L2 3191 3308 -5 866 120 0 23 chr15 60896405 60896538 -40483983 - FLAM_C SINE Alu -2 131 2 320 312 68 65 chr15 60896544 60896618 -40483903 + L2 LINE L2 2465 2537 -777 675 211 8 8 chr15 60896618 60896746 -40483775 + FLAM_A SINE Alu 2 129 -4 320 312 68 65 chr15 60896746 60896979 -40483542 + L2 LINE L2 2537 2773 -541 255 31 0 0 chr15 60897512 60897544 -40482977 + (GA)n Simple_repeat Simple_repeat 1 32 0 274 321 107 0 chr15 60898155 60898179 -40482342 + L2 LINE L2 2030 2050 -1264 282 56 0 0 chr15 60898179 60898215 -40482306 + (CA)n Simple_repeat Simple_repeat 2 37 0 274 321 107 0 chr15 60898215 60898321 -40482200 + L2 LINE L2 2050 2174 -1140 1769 128 0 0 chr15 60898321 60898563 -40481958 - AluSx SINE Alu -13 299 58 926 188 38 28 chr15 60898590 60898803 -40481718 + L2 LINE L2 3099 3313 0 2019 116 46 0 chr15 60898856 60899140 -40481381 - AluSx SINE Alu -15 297 1 346 305 144 0 chr15 60899397 60899584 -40480937 - LTR33A LTR ERVL -23 500 287 535 251 121 54 chr15 60899950 60900189 -40480332 + L3 LINE CR1 1315 1569 -8 2225 115 10 13 chr15 60900239 60900552 -40479969 - AluSx SINE Alu 0 312 1 2441 170 80 19 chr15 60900743 60901219 -40479302 + MLT1D LTR MaLR 1 505 0 2079 137 3 0 chr15 60901282 60901581 -40478940 + AluSx SINE Alu 1 300 -12 491 314 127 0 chr15 60901603 60901823 -40478698 + MIR SINE MIR 8 255 -7 252 264 0 0 chr15 60901861 60901948 -40478573 + (CTA)n Simple_repeat Simple_repeat 1 87 0 1880 162 0 23 chr15 60901974 60902276 -40478245 + AluJo SINE Alu 1 295 -17 739 257 31 18 chr15 60902980 60903206 -40477315 + MIR SINE MIR 31 259 -3 2250 106 7 13 chr15 60903527 60903850 -40476671 + AluSq SINE Alu 1 313 0 2112 114 3 13 chr15 60903852 60904150 -40476371 + AluSg SINE Alu 1 295 -15 766 304 69 28 chr15 60904399 60904791 -40475730 + L1ME4a LINE L1 5497 5904 -217 2189 196 73 2 chr15 60904941 60905379 -40475142 + MLT1D LTR MaLR 1 469 -36 234 204 0 0 chr15 60905394 60905438 -40475083 - MLT1K LTR MaLR -413 175 132 22 56 0 0 chr15 60905517 60905553 -40474968 + AT_rich Low_complexity Low_complexity 1 36 0 1888 98 117 8 chr15 60905607 60905873 -40474648 - AluSg1 SINE Alu -14 295 1 3379 101 10 29 chr15 60905875 60906249 -40474272 - L1PA16 LINE L1 -12 6154 5791 1547 203 3 23 chr15 60906249 60906550 -40473971 - AluJo SINE Alu -14 298 4 3379 101 10 29 chr15 60906550 60906689 -40473832 - L1PA16 LINE L1 -375 5791 5651 5123 197 22 17 chr15 60906733 60907785 -40472736 - L1P LINE L1 -1007 5139 4094 2103 127 3 9 chr15 60907785 60908100 -40472421 - AluSp SINE Alu 0 313 1 1769 163 51 7 chr15 60908101 60908396 -40472125 - AluSx SINE Alu -4 308 1 5123 197 22 17 chr15 60908396 60908470 -40472051 - L1P LINE L1 -2051 4095 4005 459 176 29 0 chr15 60908464 60908566 -40471955 - L1MA8 LINE L1 -29 6262 6158 * 582 310 84 7 chr15 60908564 60908861 -40471660 - L1ME4a LINE L1 -252 5869 5550 242 289 62 31 chr15 60909027 60909124 -40471397 + L1MC5 LINE L1 5439 5538 -2270 353 345 0 0 chr15 60909291 60909410 -40471111 + L1MC5 LINE L1 5536 5654 -2154 520 297 93 0 chr15 60909564 60909746 -40470775 + MLT1J LTR MaLR 1 199 -312 1484 199 71 0 chr15 60910004 60910285 -40470236 - AluJo SINE Alu -11 301 1 2416 96 0 0 chr15 60910482 60910784 -40469737 + AluSx SINE Alu 1 302 -10 317 222 14 42 chr15 60911223 60911295 -40469226 - MER58A DNA MER1_type -37 70 1 602 279 44 77 chr15 60911295 60911592 -40468929 + L1MC5 LINE L1 7157 7443 -518 2348 104 8 33 chr15 60911633 60911761 -40468760 - THE1A LTR MaLR 0 355 225 2198 103 10 0 chr15 60911761 60912052 -40468469 - AluSg SINE Alu -16 294 1 2348 104 8 33 chr15 60912052 60912287 -40468234 - THE1A LTR MaLR -130 225 1 11998 90 10 1 chr15 60912287 60913853 -40466668 - THE1A-int LTR MaLR 0 1580 1 2242 136 17 3 chr15 60913853 60914198 -40466323 - THE1A LTR MaLR 0 355 6 264 129 35 71 chr15 60914336 60914421 -40466100 + L1ME3 LINE L1 5987 6068 -94 1265 121 0 0 chr15 60914475 60914648 -40465873 - AluSx SINE Alu -17 295 123 229 36 0 0 chr15 60914648 60914676 -40465845 + THE1A LTR MaLR 328 355 0 942 103 0 0 chr15 60914688 60914804 -40465717 - AluSx SINE Alu -190 123 8 1788 164 7 0 chr15 60914844 60915130 -40465391 - AluJo SINE Alu -24 288 1 23 78 0 0 chr15 60915132 60915183 -40465338 + AT_rich Low_complexity Low_complexity 1 51 0 3592 34 0 0 chr15 60915183 60915601 -40464920 - L1PA5 LINE L1 -8 6146 5729 2612 53 0 0 chr15 60915603 60915903 -40464618 - AluY SINE Alu -10 301 2 639 221 24 75 chr15 60915928 60916141 -40464380 + MLT1K LTR MaLR 325 526 -62 305 230 14 14 chr15 60917095 60917169 -40463352 + MIR SINE MIR 29 102 -160 1936 167 3 3 chr15 60917169 60917475 -40463046 - AluJo SINE Alu -6 306 1 1433 145 0 28 chr15 60917475 60917723 -40462798 + Tigger2 DNA MER2_type 2478 2718 0 2242 99 11 0 chr15 60918229 60918533 -40461988 - AluSq SINE Alu 0 307 1 195 167 295 0 chr15 60918610 60918688 -40461833 + MIR SINE MIR 162 262 0 * 235 297 11 11 chr15 60918677 60918768 -40461753 - MIR SINE MIR -101 161 71 485 248 107 84 chr15 60919065 60919448 -40461073 + MLT1K LTR MaLR 188 579 -9 1990 118 10 24 chr15 60919603 60919900 -40460621 + AluSx SINE Alu 18 310 -2 355 151 0 0 chr15 60921472 60921525 -40458996 - MER47B DNA MER2_type 0 418 366 1428 156 4 37 chr15 60921532 60921775 -40458746 + AluJo SINE Alu 1 235 -77 189 0 0 0 chr15 60921778 60921799 -40458722 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1727 152 124 3 chr15 60921823 60922138 -40458383 - MER47B DNA MER2_type -65 353 1 2233 104 0 10 chr15 60922555 60922852 -40457669 - AluSx SINE Alu -18 294 1 460 269 54 15 chr15 60922991 60923121 -40457400 + L2 LINE L2 3138 3272 0 210 217 50 0 chr15 60923215 60923275 -40457246 - MIR SINE MIR -100 162 100 2227 114 0 3 chr15 60923881 60924187 -40456334 + AluSx SINE Alu 6 310 -2 2363 93 7 0 chr15 60924417 60924718 -40455803 + AluSq SINE Alu 1 303 -10 577 246 100 21 chr15 60924962 60925202 -40455319 - MIR SINE MIR -2 260 2 225 295 147 0 chr15 60925498 60925593 -40454928 - L2 LINE L2 -4 3268 3160 381 93 0 0 chr15 60926460 60926514 -40454007 + (TG)n Simple_repeat Simple_repeat 1 54 0 21 36 0 0 chr15 60926518 60926546 -40453975 + GC_rich Low_complexity Low_complexity 1 28 0 196 269 291 8 chr15 60928123 60928257 -40452264 + L3b LINE CR1 1409 1580 -3 1832 182 0 0 chr15 60928855 60929152 -40451369 + AluJb SINE Alu 10 306 -6 3848 186 55 14 chr15 60929521 60930375 -40450146 - L1MC4a LINE L1 -2 7806 6918 252 0 0 0 chr15 60930548 60930576 -40449945 + (A)n Simple_repeat Simple_repeat 1 28 0 228 35 0 0 chr15 60930576 60930605 -40449916 + (TA)n Simple_repeat Simple_repeat 1 29 0 997 191 95 78 chr15 60930605 60930904 -40449617 + L1MC4 LINE L1 5476 5768 -2040 1850 160 14 10 chr15 60930904 60931197 -40449324 + AluJb SINE Alu 1 294 -18 997 191 95 78 chr15 60931197 60931328 -40449193 + L1MC4 LINE L1 5768 5895 -1913 3422 136 48 7 chr15 60931328 60931908 -40448613 + L1MB7 LINE L1 5570 6173 -11 997 191 95 78 chr15 60931908 60932098 -40448423 + L1MC4 LINE L1 5895 6080 -1728 2353 99 3 0 chr15 60932098 60932400 -40448121 - AluSp SINE Alu -10 303 1 997 191 95 78 chr15 60932400 60932898 -40447623 + L1MC4 LINE L1 6080 6538 -1270 1813 163 0 13 chr15 60932898 60933198 -40447323 + AluJo SINE Alu 1 296 -16 997 191 95 78 chr15 60933198 60933268 -40447253 + L1MC4 LINE L1 6538 6605 -1203 964 149 24 12 chr15 60933395 60933563 -40446958 - AluJb SINE Alu -142 170 1 590 267 157 29 chr15 60933564 60933845 -40446676 - L1MC/D LINE L1 -1987 5821 5505 216 0 0 0 chr15 60933862 60933886 -40446635 + (TA)n Simple_repeat Simple_repeat 1 24 0 270 0 0 0 chr15 60933891 60933921 -40446600 + (T)n Simple_repeat Simple_repeat 1 30 0 2262 95 7 3 chr15 60934642 60934937 -40445584 + AluSq SINE Alu 1 296 -17 4465 176 60 36 chr15 60935201 60935393 -40445128 - L1MA9 LINE L1 -38 6274 6088 1542 172 38 17 chr15 60935393 60935683 -40444838 - AluSx SINE Alu -16 296 1 4465 176 60 36 chr15 60935683 60936144 -40444377 - L1MA9 LINE L1 -224 6088 5640 2348 97 0 10 chr15 60936144 60936454 -40444067 - AluY SINE Alu -4 307 1 4465 176 60 36 chr15 60936454 60936876 -40443645 - L1MA9 LINE L1 -672 5640 5164 930 173 30 41 chr15 60936960 60937157 -40443364 + MER105 DNA DNA 6 200 -4 470 208 50 0 chr15 60937210 60937330 -40443191 + MIR SINE MIR 66 191 -71 314 190 25 25 chr15 60937352 60937431 -40443090 + L2 LINE L2 2188 2266 -1048 1667 85 0 0 chr15 60937453 60937690 -40442831 + L1PA13 LINE L1 5907 6143 -18 936 314 93 47 chr15 60937752 60938107 -40442414 + L2 LINE L2 2406 2743 -570 2396 85 0 0 chr15 60938107 60938402 -40442119 - AluSx SINE Alu -17 295 1 936 314 93 47 chr15 60938402 60938893 -40441628 + L2 LINE L2 2743 3283 -30 1129 148 0 11 chr15 60938955 60939144 -40441377 - AluJb SINE Alu -6 306 120 442 151 14 0 chr15 60939275 60939348 -40441173 - AluS SINE Alu -238 75 2 364 175 19 107 chr15 60939349 60939452 -40441069 - MER97a DNA MER1_type? -798 96 3 1782 147 49 3 chr15 60939516 60939801 -40440720 + AluSx SINE Alu 1 298 -14 218 160 20 0 chr15 60941698 60941748 -40438773 + (CCCA)n Simple_repeat Simple_repeat 2 52 0 241 218 178 30 chr15 60943060 60943161 -40437360 + MIR3 SINE MIR 59 174 -34 212 320 90 0 chr15 60943514 60943614 -40436907 + L2 LINE L2 3155 3263 -9 522 0 0 0 chr15 60943769 60943827 -40436694 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 737 288 33 33 chr15 60943833 60943937 -40436584 - L1ME4a LINE L1 -69 6052 5949 2513 80 0 0 chr15 60943937 60944248 -40436273 - AluSx SINE Alu -1 311 1 737 288 33 33 chr15 60944248 60944532 -40435989 - L1ME4a LINE L1 -171 5950 5664 601 180 0 0 chr15 60944533 60944633 -40435888 - AluJb SINE Alu -5 307 208 315 160 0 17 chr15 60944633 60944698 -40435823 - AluYa8 SINE Alu -127 173 127 280 224 0 129 chr15 60945450 60945510 -40435011 + MER5B DNA MER1_type 5 45 -133 1603 181 3 40 chr15 60945510 60945831 -40434690 + AluJo SINE Alu 1 309 -3 280 224 0 129 chr15 60945831 60945886 -40434635 + MER5B DNA MER1_type 45 105 -73 2204 115 0 10 chr15 60946685 60946989 -40433532 - AluSx SINE Alu -11 301 1 215 307 190 34 chr15 60947144 60947349 -40433172 + MIR SINE MIR 13 249 -13 235 254 73 0 chr15 60947367 60947422 -40433099 + MIR SINE MIR 111 169 -93 228 194 202 32 chr15 60948762 60948886 -40431635 - MIR3 SINE MIR -43 165 21 245 303 7 56 chr15 60948952 60949094 -40431427 - HAL1 LINE L1 -5 2502 2368 1759 174 10 3 chr15 60949121 60949419 -40431102 - AluJo SINE Alu -9 303 4 189 0 0 0 chr15 60949524 60949545 -40430976 + (CTA)n Simple_repeat Simple_repeat 2 22 0 297 0 0 0 chr15 60949545 60949578 -40430943 + (CA)n Simple_repeat Simple_repeat 2 34 0 2230 100 10 3 chr15 60950244 60950535 -40429986 - AluSx SINE Alu -19 293 1 496 288 166 0 chr15 60951041 60951180 -40429341 + MER5A DNA MER1_type 28 189 0 282 288 68 30 chr15 60951882 60952014 -40428507 + MIR SINE MIR 76 212 -50 213 205 0 0 chr15 60952233 60952272 -40428249 + GA-rich Low_complexity Low_complexity 4 42 0 712 10 0 40 chr15 60952275 60952374 -40428147 + (TG)n Simple_repeat Simple_repeat 2 96 0 2021 139 3 0 chr15 60952954 60953263 -40427258 - AluSx SINE Alu -2 310 1 1599 178 34 110 chr15 60953263 60953798 -40426723 - L1MC5 LINE L1 -287 7674 7181 1591 177 3 29 chr15 60955105 60955415 -40425106 + AluJo SINE Alu 1 302 -10 359 255 38 38 chr15 60955998 60956104 -40424417 - MIR SINE MIR -62 146 41 878 196 19 53 chr15 60956415 60956624 -40423897 - AluJo SINE Alu -110 202 1 1975 170 51 80 chr15 60957078 60957586 -40422935 + L1MB8 LINE L1 5693 6184 0 347 318 128 6 chr15 60957636 60957815 -40422706 - MIR SINE MIR -29 233 33 244 303 40 13 chr15 60958514 60958590 -40421931 + L2 LINE L2 3190 3267 -5 233 324 125 28 chr15 60958840 60959016 -40421505 + L2 LINE L2 2862 3054 -218 1035 173 16 5 chr15 60959429 60959614 -40420907 + MER5A DNA MER1_type 1 187 -2 185 286 181 38 chr15 60960505 60960638 -40419883 + MIR3 SINE MIR 15 166 -42 1728 98 0 4 chr15 60960639 60960875 -40419646 + AluSq SINE Alu 1 235 -78 1073 175 6 6 chr15 60960954 60961137 -40419384 + MER3 DNA MER1_type 27 209 0 306 275 43 0 chr15 60961754 60961823 -40418698 + L2 LINE L2 3183 3254 -18 364 252 155 45 chr15 60961861 60962171 -40418350 + L1MC4a LINE L1 5733 6076 -1732 271 277 24 0 chr15 60962915 60962998 -40417523 - MIR3 SINE MIR -15 193 109 387 321 36 36 chr15 60963700 60963868 -40416653 - MIR3 SINE MIR -9 199 32 2182 98 0 26 chr15 60963999 60964304 -40416217 + AluSx SINE Alu 1 297 -15 2035 178 23 68 chr15 60964873 60965357 -40415164 + MLT1C LTR MaLR 6 467 0 387 287 138 18 chr15 60965696 60965863 -40414658 + MIR SINE MIR 2 188 -74 1248 236 4 0 chr15 60965872 60966139 -40414382 + AluJo SINE Alu 1 268 -44 669 78 52 0 chr15 60966139 60966254 -40414267 + GA-rich Low_complexity Low_complexity 3 123 0 195 189 122 68 chr15 60966510 60966584 -40413937 + L2 LINE L2 3236 3313 0 * 382 299 8 67 chr15 60966566 60966700 -40413821 + MIR SINE MIR 64 189 -73 438 273 62 34 chr15 60966922 60967098 -40413423 + MIR SINE MIR 32 212 -50 431 299 184 5 chr15 60968201 60968418 -40412103 + MIR SINE MIR 7 262 0 440 247 44 77 chr15 60968882 60969064 -40411457 - L1ME4a LINE L1 -4 6117 5942 197 329 0 14 chr15 60970189 60970262 -40410259 + MIR SINE MIR 20 91 -117 * 246 330 32 0 chr15 60970255 60970349 -40410172 - MIR SINE MIR -85 123 27 188 281 88 79 chr15 60970880 60970994 -40409527 - L2 LINE L2 -24 3289 3175 1481 179 4 11 chr15 60971886 60972159 -40408362 + AluJb SINE Alu 5 275 -37 264 167 50 0 chr15 60972223 60972283 -40408238 + MIR3 SINE MIR 144 206 -2 193 327 35 75 chr15 60972543 60972742 -40407779 - L2 LINE L2 -177 3095 2905 202 232 18 18 chr15 60972959 60973015 -40407506 - MER5B DNA MER1_type -18 160 105 194 262 229 0 chr15 60973850 60973972 -40406549 - MIR SINE MIR -85 177 28 494 286 102 10 chr15 60974495 60974701 -40405820 + MIR SINE MIR 21 245 -17 1600 167 20 76 chr15 60974956 60975363 -40405158 - MER58D DNA MER1_type 0 386 3 1757 162 0 0 chr15 60975601 60975891 -40404630 - AluJb SINE Alu -22 290 1 184 222 42 83 chr15 60976203 60976275 -40404246 + MIR SINE MIR 110 178 -84 1676 122 30 53 chr15 60976319 60976446 -40404075 + AluJb SINE Alu 12 140 -172 2146 112 3 13 chr15 60976446 60976759 -40403762 + AluSx SINE Alu 1 310 -2 1676 122 30 53 chr15 60976759 60976934 -40403587 + AluJb SINE Alu 140 307 -5 333 268 188 45 chr15 60977144 60977368 -40403153 + L1ME LINE L1 5565 5820 -301 438 20 0 0 chr15 60977378 60977429 -40403092 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1993 128 0 0 chr15 60977430 60977718 -40402803 - AluSx SINE Alu -24 288 1 1298 197 36 136 chr15 60977730 60978114 -40402407 + L1MC4 LINE L1 7541 7853 -189 216 97 0 0 chr15 60978114 60978145 -40402376 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 1298 197 36 136 chr15 60978145 60978318 -40402203 + L1MC4 LINE L1 7853 8042 0 211 261 0 15 chr15 60979079 60979144 -40401377 + (CA)n Simple_repeat Simple_repeat 2 65 0 1904 117 13 3 chr15 60979367 60979666 -40400855 + AluSq SINE Alu 1 302 -11 1247 194 8 4 chr15 60980088 60980330 -40400191 + AluJo SINE Alu 44 286 -26 393 22 0 0 chr15 60980331 60980377 -40400144 + (CA)n Simple_repeat Simple_repeat 2 47 0 435 324 21 7 chr15 60980384 60980526 -40399995 + MIR SINE MIR 4 147 -115 1923 143 3 3 chr15 60980593 60980894 -40399627 - AluJb SINE Alu -11 301 1 403 260 96 0 chr15 60981125 60981229 -40399292 + MIR SINE MIR 90 203 -59 1655 156 7 28 chr15 60982030 60982169 -40398352 + AluJb SINE Alu 1 134 -178 2091 104 0 0 chr15 60982169 60982473 -40398048 + AluSx SINE Alu 5 308 0 1655 156 7 28 chr15 60982473 60982614 -40397907 + AluJb SINE Alu 134 276 -36 461 62 15 0 chr15 60982637 60982702 -40397819 + (GGAA)n Simple_repeat Simple_repeat 1 66 0 379 123 0 4 chr15 60982845 60982908 -40397613 - Alu SINE Alu -246 55 1 2005 79 0 34 chr15 60983102 60983393 -40397128 + AluY SINE Alu 2 282 -29 561 319 11 22 chr15 60984149 60984331 -40396190 + MIR3 SINE MIR 25 204 -4 2191 105 0 0 chr15 60984358 60984653 -40395868 + AluSx SINE Alu 1 295 -17 320 264 214 7 chr15 60984990 60985130 -40395391 + MIR3 SINE MIR 23 191 -17 1732 99 0 0 chr15 60985503 60985736 -40394785 + AluSc SINE Alu 51 283 -26 432 55 0 0 chr15 60985736 60985744 -40394777 + (TG)n Simple_repeat Simple_repeat 1 63 0 432 55 0 0 chr15 60985744 60985799 -40394722 + (TG)n Simple_repeat Simple_repeat 2 56 0 1284 212 67 20 chr15 60985830 60986175 -40394346 - L1ME3A LINE L1 -9 6161 5801 494 277 114 12 chr15 60986470 60986636 -40393885 - MIR SINE MIR -70 192 10 553 282 169 43 chr15 60986660 60987103 -40393418 + L2 LINE L2 2810 3308 -5 465 273 8 0 chr15 60987166 60987287 -40393234 + MIR3 SINE MIR 63 184 -24 318 280 75 0 chr15 60987679 60987786 -40392735 + L2 LINE L2 3127 3241 -31 691 101 0 10 chr15 60988253 60988352 -40392169 + MER4A LTR ERV1 1 98 -566 1366 117 245 94 chr15 60988352 60988703 -40391818 + MER4A LTR ERV1 261 664 0 526 289 22 0 chr15 60988839 60988974 -40391547 + MIR SINE MIR 51 188 -74 1673 110 0 0 chr15 60989807 60990035 -40390486 + AluSg/x SINE Alu 72 299 -11 2131 71 57 0 chr15 60990084 60990365 -40390156 + AluSx SINE Alu 1 297 -15 777 177 13 6 chr15 60991016 60991174 -40389347 - Charlie4 DNA MER1_type 0 1961 1803 874 206 65 32 chr15 60991198 60991445 -40389076 - Charlie4 DNA MER1_type -1705 256 2 1868 167 91 60 chr15 60991608 60992092 -40388429 + MLT1D LTR MaLR 5 503 -2 1336 169 35 14 chr15 60993043 60993327 -40387194 + AluYa5 SINE Alu 1 290 -11 1497 146 101 0 chr15 60994836 60995104 -40385417 + AluJb SINE Alu 1 295 -17 1970 123 3 3 chr15 60995546 60995839 -40384682 - AluSx SINE Alu -19 293 1 32 0 0 0 chr15 60995839 60995871 -40384650 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr15 60996604 60996627 -40383894 + AT_rich Low_complexity Low_complexity 1 23 0 233 169 17 0 chr15 60996890 60996949 -40383572 + (CA)n Simple_repeat Simple_repeat 2 61 0 207 167 0 37 chr15 60997674 60997728 -40382793 + A-rich Low_complexity Low_complexity 2 53 0 2220 100 0 0 chr15 60999592 60999891 -40380630 - AluSx SINE Alu -13 299 1 2275 102 30 0 chr15 61003970 61004273 -40376248 - AluSx SINE Alu 0 312 1 219 219 0 0 chr15 61006658 61006699 -40373822 + GA-rich Low_complexity Low_complexity 2 42 0 887 84 0 8 chr15 61007552 61007671 -40372850 + AluSp/q SINE Alu 188 305 -8 1623 74 5 15 chr15 61007671 61007874 -40372647 - AluSp SINE Alu -112 201 1 734 170 75 6 chr15 61009413 61009572 -40370949 - MER45A DNA AcHobo 0 178 9 196 229 62 62 chr15 61011553 61011618 -40368903 + MIR SINE MIR 124 191 -71 2368 88 7 0 chr15 61011618 61011912 -40368609 + AluSx SINE Alu 1 296 -16 196 229 62 62 chr15 61011912 61011942 -40368579 + MIR SINE MIR 190 219 -43 410 285 173 32 chr15 61012757 61013105 -40367416 + L2 LINE L2 2635 3033 -239 1936 133 50 10 chr15 61013123 61013423 -40367098 - AluJb SINE Alu 0 312 1 1737 151 35 21 chr15 61014007 61014291 -40366230 - AluJb SINE Alu -24 288 1 524 211 32 87 chr15 61014546 61014625 -40365896 - MER5A DNA MER1_type -1 188 106 2686 27 0 0 chr15 61014625 61014922 -40365599 - AluY SINE Alu -14 297 1 524 211 32 87 chr15 61014922 61015027 -40365494 - MER5A DNA MER1_type -83 106 14 229 309 183 23 chr15 61015505 61015680 -40364841 + MIR SINE MIR 60 262 0 240 278 28 0 chr15 61015683 61015755 -40364766 - MER116 DNA Mariner -6 74 1 2361 91 7 0 chr15 61016956 61017265 -40363256 + AluSp SINE Alu 1 311 -2 285 224 51 31 chr15 61018032 61018130 -40362391 + Charlie8 DNA MER1_type 122 221 -2196 531 275 109 0 chr15 61018546 61018775 -40361746 - L1ME4a LINE L1 -178 5943 5690 185 313 36 36 chr15 61019146 61019229 -40361292 - L2 LINE L2 -3 3269 3187 215 313 143 44 chr15 61019484 61019756 -40360765 + L2 LINE L2 1136 1434 -1880 1700 157 54 11 chr15 61020280 61020560 -40359961 - AluJo SINE Alu -20 292 1 4405 190 111 65 chr15 61021420 61021557 -40358964 + L1MC4 LINE L1 6516 6645 -1397 523 26 40 0 chr15 61021557 61021633 -40358888 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 4405 190 111 65 chr15 61021633 61021732 -40358789 + L1MC4 LINE L1 6645 6738 -1304 2173 121 0 3 chr15 61021732 61022021 -40358500 + AluSq SINE Alu 1 288 -25 4405 190 111 65 chr15 61022021 61023238 -40357283 + L1MC4 LINE L1 6738 8037 -5 378 216 153 60 chr15 61023283 61023551 -40356970 + L1ME4a LINE L1 5748 6040 -81 1160 124 0 0 chr15 61026684 61026837 -40353684 - AluSx SINE Alu -19 291 139 2233 87 7 17 chr15 61026840 61027139 -40353382 - AluSc SINE Alu -11 298 3 918 83 7 90 chr15 61027263 61027330 -40353191 - AluSx SINE Alu -179 133 83 1974 73 87 11 chr15 61027330 61027617 -40352904 + AluY SINE Alu 1 309 -2 918 83 7 90 chr15 61027617 61027694 -40352827 - AluSx SINE Alu -229 83 1 359 322 92 99 chr15 61028391 61028664 -40351857 - L2 LINE L2 -13 3259 2989 2260 96 0 17 chr15 61028980 61029273 -40351248 - AluSq SINE Alu -21 292 5 417 213 180 55 chr15 61031455 61031472 -40349049 - MER58C DNA MER1_type -2213 207 194 1896 96 0 4 chr15 61031472 61031722 -40348799 - AluSg1 SINE Alu -60 249 1 417 213 180 55 chr15 61031722 61031887 -40348634 - MER58C DNA MER1_type -2226 194 2 2386 93 0 0 chr15 61033460 61033760 -40346761 - AluSq SINE Alu -13 300 1 1100 179 15 5 chr15 61033763 61033964 -40346557 + MER20 DNA MER1_type 1 203 -16 24 0 0 0 chr15 61034177 61034201 -40346320 + AT_rich Low_complexity Low_complexity 1 24 0 374 228 121 54 chr15 61034350 61034499 -40346022 - L1ME1 LINE L1 -300 5866 5708 2254 89 0 0 chr15 61035847 61036178 -40344343 + AluSc SINE Alu 1 331 0 595 170 52 7 chr15 61036784 61036919 -40343602 - Charlie4 DNA MER1_type 0 1961 1821 1193 140 0 0 chr15 61037070 61037234 -40343287 - FRAM SINE Alu -20 156 1 2406 92 0 7 chr15 61037240 61037544 -40342977 - AluSx SINE Alu -10 302 1 789 272 92 18 chr15 61037779 61038199 -40342322 + L1ME3A LINE L1 5431 5911 -259 2437 67 3 3 chr15 61038199 61038499 -40342022 - AluY SINE Alu -11 300 1 789 272 92 18 chr15 61038499 61038540 -40341981 + L1ME3A LINE L1 5911 5948 -222 294 29 0 0 chr15 61038544 61038579 -40341942 + (TA)n Simple_repeat Simple_repeat 1 35 0 1575 177 91 86 chr15 61041052 61041515 -40339006 + MLT1C LTR MaLR 1 465 -2 264 348 43 22 chr15 61041693 61041831 -40338690 + MIR3 SINE MIR 53 193 -15 1563 175 3 92 chr15 61041869 61042194 -40338327 - AluJb SINE Alu -16 296 1 1658 124 0 13 chr15 61042229 61042462 -40338059 + AluJb SINE Alu 81 310 -2 2092 127 21 0 chr15 61043184 61043475 -40337046 - AluSx SINE Alu -15 297 1 1723 181 19 29 chr15 61043501 61043815 -40336706 + AluJo SINE Alu 1 311 -1 1117 157 0 0 chr15 61045117 61045283 -40335238 - AluSg/x SINE Alu -16 294 129 2093 123 3 13 chr15 61045365 61045666 -40334855 + AluSx SINE Alu 1 298 -14 2174 125 42 31 chr15 61046531 61046916 -40333605 + Tigger2a DNA MER2_type 1 389 -45 1391 134 4 69 chr15 61047128 61047359 -40333162 + AluJb SINE Alu 85 300 -12 916 141 7 0 chr15 61047928 61048063 -40332458 - FLAM_C SINE Alu -7 136 1 309 372 84 53 chr15 61048166 61049050 -40331471 + L2 LINE L2 2067 2977 -337 183 80 0 0 chr15 61049057 61049082 -40331439 + (TC)n Simple_repeat Simple_repeat 1 25 0 2103 152 0 3 chr15 61049082 61049385 -40331136 - AluSx SINE Alu -10 302 1 1125 162 33 14 chr15 61049400 61049610 -40330911 - MER20 DNA MER1_type 0 219 6 440 119 0 0 chr15 61049608 61049675 -40330846 + MER20 DNA MER1_type 149 215 -4 * 606 293 71 4 chr15 61049679 61049904 -40330617 - MER112 DNA MER1_type 0 260 21 794 83 9 0 chr15 61051354 61051463 -40329058 + HY1 scRNA scRNA 2 111 -1 1902 143 10 27 chr15 61052221 61052522 -40327999 + AluJo SINE Alu 1 296 -16 726 255 222 5 chr15 61052700 61053088 -40327433 - L1ME4a LINE L1 -183 5938 5467 1795 100 10 93 chr15 61053088 61053398 -40327123 + AluSx SINE Alu 2 285 -27 1221 92 0 136 chr15 61053398 61053432 -40327089 + AluSq SINE Alu 2 317 0 1638 122 4 8 chr15 61053584 61053829 -40326692 - AluSx SINE Alu -63 249 6 2082 128 0 0 chr15 61053907 61054213 -40326308 - AluSx SINE Alu -2 310 5 2172 62 3 24 chr15 61054726 61055015 -40325506 - AluY SINE Alu -26 285 3 22 0 0 0 chr15 61055196 61055218 -40325303 + AT_rich Low_complexity Low_complexity 1 22 0 501 110 37 0 chr15 61055220 61055302 -40325219 + AluSg SINE Alu 3 87 -223 189 0 0 0 chr15 61055315 61055336 -40325185 + (TTCC)n Simple_repeat Simple_repeat 4 24 0 1766 65 10 55 chr15 61055467 61055777 -40324744 + AluY SINE Alu 5 300 -11 231 293 231 0 chr15 61056552 61056653 -40323868 + L1M4 LINE L1 3661 3737 -2409 4625 124 38 30 chr15 61056653 61056983 -40323538 + L1MA4 LINE L1 5461 5787 -513 1935 143 7 0 chr15 61056983 61057291 -40323230 + AluJb SINE Alu 1 310 -2 4625 124 38 30 chr15 61057291 61057793 -40322728 + L1MA4 LINE L1 5787 6300 0 231 293 231 0 chr15 61057793 61057998 -40322523 + L1M4 LINE L1 3737 4038 -2108 1494 144 30 15 chr15 61058011 61058281 -40322240 - L1MA5 LINE L1 0 6300 6027 3288 155 53 10 chr15 61058328 61058927 -40321594 + L1MB2 LINE L1 5540 6164 -7 1310 153 55 36 chr15 61058948 61059222 -40321299 + AluJo SINE Alu 1 279 -33 2077 110 0 16 chr15 61059422 61059730 -40320791 - AluSg SINE Alu -7 303 1 1936 145 0 0 chr15 61060038 61060328 -40320193 + AluSq SINE Alu 1 290 -23 865 206 0 0 chr15 61060383 61060548 -40319973 - FRAM SINE Alu -15 161 1 673 294 91 5 chr15 61060691 61060912 -40319609 - MIR SINE MIR -10 252 13 1919 125 24 0 chr15 61061341 61061637 -40318884 - AluSx SINE Alu -9 303 1 594 184 44 0 chr15 61061901 61062015 -40318506 + FLAM_A SINE Alu 13 131 -11 400 112 26 0 chr15 61062477 61062553 -40317968 + MER51A LTR ERV1 1 61 -579 4480 99 26 2 chr15 61062553 61063178 -40317343 + MER51C LTR ERV1 1 640 0 246 288 0 14 chr15 61064517 61064590 -40315931 - L2 LINE L2 -1 3271 3200 2193 79 7 3 chr15 61065217 61065521 -40315000 - AluSq SINE Alu -8 305 1 210 37 0 0 chr15 61066499 61066526 -40313995 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 194 91 30 0 chr15 61066942 61066975 -40313546 + (CA)n Simple_repeat Simple_repeat 2 35 0 288 266 127 0 chr15 61067021 61067100 -40313421 - MIR SINE MIR -115 147 59 1955 135 3 16 chr15 61067952 61068264 -40312257 - AluJb SINE Alu -4 308 1 2009 117 3 13 chr15 61068531 61068829 -40311692 - AluSx SINE Alu -4 308 14 637 219 67 49 chr15 61069558 61069670 -40310851 + MER5B DNA MER1_type 1 118 -60 2096 110 7 3 chr15 61069670 61069979 -40310542 - AluSq SINE Alu -3 310 1 637 219 67 49 chr15 61069979 61070030 -40310491 + MER5B DNA MER1_type 118 167 -11 188 354 35 42 chr15 61070068 61070212 -40310309 + L2 LINE L2 2246 2388 -926 1642 131 45 24 chr15 61070514 61070804 -40309717 - AluJb SINE Alu -16 296 1 662 284 12 12 chr15 61071498 61071667 -40308854 - MIR SINE MIR -60 202 34 727 211 105 14 chr15 61071947 61072156 -40308365 + L1MC4a LINE L1 5735 5962 -1846 312 176 147 29 chr15 61072227 61072329 -40308192 + L1MC4a LINE L1 6055 6168 -1640 1977 116 0 23 chr15 61072516 61072654 -40307867 + AluSq SINE Alu 1 141 -172 2316 87 0 3 chr15 61072654 61072966 -40307555 + AluY SINE Alu 1 311 0 1977 116 0 23 chr15 61072966 61073129 -40307392 + AluSq SINE Alu 141 295 -18 2236 92 3 0 chr15 61073137 61073429 -40307092 + AluSx SINE Alu 6 298 -14 1962 106 0 11 chr15 61073608 61073902 -40306619 - AluSq SINE Alu 0 306 16 1323 159 71 68 chr15 61076032 61076160 -40304361 + AluJo SINE Alu 1 127 -185 2184 94 3 0 chr15 61076160 61076457 -40304064 - AluSq SINE Alu -15 298 1 1323 159 71 68 chr15 61076457 61076623 -40303898 + AluJo SINE Alu 127 296 -16 2245 103 0 3 chr15 61076639 61076949 -40303572 + AluSq SINE Alu 1 309 -4 1960 125 0 19 chr15 61076951 61077264 -40303257 + AluSq SINE Alu 1 307 -6 2216 82 17 3 chr15 61078204 61078498 -40302023 + AluSx SINE Alu 1 298 -14 369 286 161 10 chr15 61078829 61079028 -40301493 + MIR SINE MIR 34 262 0 536 241 185 10 chr15 61079434 61079629 -40300892 + MIR SINE MIR 14 242 -20 23 0 0 0 chr15 61082067 61082090 -40298431 + AT_rich Low_complexity Low_complexity 1 23 0 758 153 23 15 chr15 61082375 61082506 -40298015 - FLAM_C SINE Alu 0 133 2 829 112 0 0 chr15 61082510 61082635 -40297886 - AluSp/q SINE Alu -4 309 185 2182 88 0 3 chr15 61082637 61082933 -40297588 + AluSg SINE Alu 1 295 -15 476 277 66 15 chr15 61082941 61083078 -40297443 + MIR SINE MIR 48 191 -71 1418 144 134 25 chr15 61083115 61083392 -40297129 - AluJb SINE Alu -5 307 1 431 267 95 70 chr15 61083393 61083520 -40297001 - L1ME4a LINE L1 -276 5845 5723 1816 111 52 0 chr15 61083520 61083834 -40296687 - AluSq SINE Alu 0 328 1 431 267 95 70 chr15 61083834 61083855 -40296666 - L1ME4a LINE L1 -398 5723 5704 2160 109 3 0 chr15 61083855 61084157 -40296364 - AluSp SINE Alu -10 303 1 431 267 95 70 chr15 61084157 61084291 -40296230 - L1ME4a LINE L1 -417 5704 5554 591 159 0 0 chr15 61084338 61084426 -40296095 + AluJ/FLAM SINE Alu 2 89 -223 1868 141 3 3 chr15 61084659 61084984 -40295537 - AluSx SINE Alu 0 312 1 277 292 142 26 chr15 61085300 61085413 -40295108 + MIR SINE MIR 32 157 -105 29 70 0 0 chr15 61085413 61085470 -40295051 + AT_rich Low_complexity Low_complexity 1 57 0 554 223 51 126 chr15 61085473 61085578 -40294943 - MIR SINE MIR -15 247 162 922 100 0 0 chr15 61085578 61085724 -40294797 - FLAM_C SINE Alu 0 147 2 554 223 51 126 chr15 61085724 61085831 -40294690 - MIR SINE MIR -100 162 49 2120 122 3 0 chr15 61086117 61086421 -40294100 + AluSx SINE Alu 1 305 -7 2207 96 3 7 chr15 61086806 61087109 -40293412 + AluSx SINE Alu 1 302 -10 399 299 91 26 chr15 61087134 61087346 -40293175 + MIR SINE MIR 1 223 -37 502 82 0 14 chr15 61087582 61087655 -40292866 - L1MB8 LINE L1 -6 6172 6101 2421 159 83 4 chr15 61087657 61087947 -40292574 - L1M4 LINE L1 -408 5770 5504 2151 97 7 3 chr15 61087947 61088245 -40292276 - AluSg SINE Alu -11 299 1 1948 122 7 7 chr15 61088245 61088541 -40291980 - AluSx SINE Alu -16 296 1 2421 159 83 4 chr15 61088541 61088883 -40291638 - L1M4 LINE L1 -673 5505 5088 1537 163 64 11 chr15 61089104 61089387 -40291134 - AluJb SINE Alu -14 298 1 32 26 0 0 chr15 61089473 61089512 -40291009 + AT_rich Low_complexity Low_complexity 1 39 0 1629 191 10 3 chr15 61089586 61089885 -40290636 - AluJo SINE Alu -11 301 1 2084 128 0 3 chr15 61089985 61090291 -40290230 - AluSx SINE Alu -7 305 1 2238 180 81 57 chr15 61090482 61091144 -40289377 - L1MD3 LINE L1 -10 8002 7359 410 179 105 0 chr15 61091125 61091220 -40289301 - L1MC5 LINE L1 -853 7108 7004 * 1928 82 52 0 chr15 61091317 61091613 -40288908 - AluY SINE Alu 0 310 1 1355 174 71 0 chr15 61091638 61091920 -40288601 + AluJb SINE Alu 1 302 -10 286 229 0 0 chr15 61091920 61091974 -40288547 + L3 LINE CR1 1518 1574 -3 2115 84 16 42 chr15 61092686 61092994 -40287527 + AluSx SINE Alu 2 301 -11 337 231 250 9 chr15 61094225 61094333 -40286188 - L2 LINE L2 -5 3308 3175 299 288 63 78 chr15 61094562 61094737 -40285784 + L1ME LINE L1 5332 5503 -618 1550 137 49 53 chr15 61094737 61095047 -40285474 + AluJo SINE Alu 3 311 0 299 288 63 78 chr15 61095047 61095202 -40285319 + L1ME LINE L1 5503 5659 -462 1536 232 24 6 chr15 61096412 61096744 -40283777 + MLT1F LTR MaLR 11 348 -194 221 319 87 0 chr15 61096756 61096825 -40283696 - L2 LINE L2 -42 3230 3156 377 345 72 29 chr15 61097030 61097239 -40283282 - LTR67 LTR ERVL -258 299 82 1549 194 52 3 chr15 61097433 61097758 -40282763 - MER58B DNA MER1_type 0 341 1 3043 109 55 11 chr15 61098016 61098473 -40282048 - MER39 LTR ERV1 0 707 231 1275 145 9 28 chr15 61098491 61098705 -40281816 - AluJb SINE Alu -19 293 84 1209 165 67 0 chr15 61098705 61098929 -40281592 - MER39 LTR ERV1 -465 242 4 881 191 0 0 chr15 61098944 61099112 -40281409 - FRAM SINE Alu -13 163 1 2150 105 7 0 chr15 61099175 61099479 -40281042 + AluSg1 SINE Alu 1 306 -3 1613 171 42 0 chr15 61099744 61100030 -40280491 - AluJo SINE Alu -14 298 1 1155 239 0 12 chr15 61100289 61100536 -40279985 + MIR SINE MIR 14 257 -5 1646 160 4 0 chr15 61100547 61100822 -40279699 + AluJo SINE Alu 1 276 -36 1986 126 0 0 chr15 61101111 61101404 -40279117 - AluY SINE Alu -18 293 1 420 279 76 6 chr15 61101418 61101576 -40278945 - L1ME LINE L1 -477 5644 5476 931 171 6 6 chr15 61101652 61101810 -40278711 - FRAM SINE Alu -8 158 1 1673 140 0 32 chr15 61102018 61102297 -40278224 - AluJo SINE Alu -16 296 27 1189 119 0 0 chr15 61102303 61102479 -40278042 - AluSg/x SINE Alu -1 311 136 1197 169 119 0 chr15 61102692 61102911 -40277610 - AluJo SINE Alu -57 255 11 390 291 103 58 chr15 61102913 61103136 -40277385 - L1ME LINE L1 -927 5219 4987 302 252 218 8 chr15 61103338 61103604 -40276917 + L1ME4a LINE L1 5694 6015 -106 1728 182 7 3 chr15 61103699 61103995 -40276526 + AluJo SINE Alu 2 298 -14 22 0 0 0 chr15 61104029 61104051 -40276470 + AT_rich Low_complexity Low_complexity 1 22 0 491 266 65 19 chr15 61104332 61104486 -40276035 + MIR3 SINE MIR 27 187 -21 336 24 0 0 chr15 61104669 61104710 -40275811 + (TG)n Simple_repeat Simple_repeat 2 42 0 1663 112 0 5 chr15 61104726 61104950 -40275571 - AluSg SINE Alu -87 223 1 341 307 0 26 chr15 61105287 61105401 -40275120 - MIR3 SINE MIR -48 160 50 251 261 29 14 chr15 61105420 61105489 -40275032 + MIR SINE MIR 42 111 -97 587 110 0 147 chr15 61106110 61106246 -40274275 + MLT1A1 LTR MaLR 1 116 -249 1463 159 17 0 chr15 61106270 61106503 -40274018 - AluJo SINE Alu -21 291 55 6635 121 214 45 chr15 61106506 61107957 -40272564 - pTR5 LTR ERV1 0 2438 743 336 172 0 0 chr15 61107957 61108015 -40272506 - AluJo SINE Alu -244 58 1 1563 144 20 0 chr15 61108015 61108265 -40272256 + MLT1A1 LTR MaLR 111 365 0 2356 112 0 0 chr15 61108329 61108641 -40271880 - AluSx SINE Alu 0 312 1 875 173 0 0 chr15 61108683 61108816 -40271705 - FLAM_C SINE Alu -10 133 1 237 200 0 33 chr15 61108830 61108890 -40271631 - LTR49 LTR ERV1 -79 516 459 2631 231 73 79 chr15 61108904 61108929 -40271592 - L1MC4 LINE L1 -1 8041 8017 2243 110 0 0 chr15 61108929 61109219 -40271302 + AluSg1 SINE Alu 1 290 -19 2631 231 73 79 chr15 61109219 61109427 -40271094 - L1MC4 LINE L1 -25 8017 7809 2220 141 0 0 chr15 61109427 61109739 -40270782 + AluSx SINE Alu 1 312 0 2631 231 73 79 chr15 61109739 61110282 -40270239 - L1MC4 LINE L1 -233 7809 7264 2295 112 3 3 chr15 61110282 61110587 -40269934 - AluSx SINE Alu -7 305 1 2631 231 73 79 chr15 61110587 61110755 -40269766 - L1MC4 LINE L1 -778 7264 7097 1749 191 6 16 chr15 61110755 61111070 -40269451 - AluJo SINE Alu 0 312 1 2631 231 73 79 chr15 61111070 61111111 -40269410 - L1MC4 LINE L1 -945 7097 7057 2427 101 0 9 chr15 61111111 61111427 -40269094 - AluSq SINE Alu 0 313 1 2631 231 73 79 chr15 61111427 61111665 -40268856 - L1MC4 LINE L1 -985 7057 6821 1090 147 12 0 chr15 61111685 61111848 -40268673 - AluSg/x SINE Alu -13 299 135 335 227 82 41 chr15 61111888 61111985 -40268536 - HAL1b LINE L1 -500 848 748 237 339 161 0 chr15 61112100 61112230 -40268291 - MER5A DNA MER1_type -3 186 36 323 309 94 35 chr15 61112360 61112561 -40267960 - L1MDa LINE L1 -4436 2104 1892 512 146 0 11 chr15 61112619 61112708 -40267813 - FLAM_C SINE Alu -2 141 54 751 289 84 59 chr15 61112722 61113044 -40267477 - HAL1 LINE L1 -1071 1436 1107 21 0 0 0 chr15 61113044 61113065 -40267456 + AT_rich Low_complexity Low_complexity 1 21 0 1836 177 0 17 chr15 61113065 61113359 -40267162 - AluJb SINE Alu -23 289 1 285 214 286 0 chr15 61113871 61113969 -40266552 + MIR SINE MIR 28 153 -109 2365 92 0 10 chr15 61114037 61114341 -40266180 - AluSx SINE Alu -11 301 1 1418 217 118 32 chr15 61114569 61114659 -40265862 - HAL1 LINE L1 -167 2340 2259 2147 92 17 24 chr15 61114659 61114953 -40265568 - AluSg SINE Alu -18 292 1 1418 217 118 32 chr15 61114953 61115387 -40265134 - HAL1 LINE L1 -248 2259 1771 1249 148 114 25 chr15 61115742 61115979 -40264542 - AluJo SINE Alu -21 291 34 233 259 68 61 chr15 61116122 61116269 -40264252 + MIR SINE MIR 109 256 -6 271 300 138 8 chr15 61116973 61117103 -40263418 + L2 LINE L2 3125 3271 -1 198 118 0 0 chr15 61117265 61117299 -40263222 + (TC)n Simple_repeat Simple_repeat 1 34 0 297 222 42 0 chr15 61117364 61117436 -40263085 - MIR SINE MIR -79 183 109 696 240 54 50 chr15 61118463 61118721 -40261800 - MIR SINE MIR 0 262 4 665 215 41 58 chr15 61119050 61119222 -40261299 - MER5B DNA MER1_type -3 175 7 375 268 54 2 chr15 61119275 61119408 -40261113 + MIR SINE MIR 16 154 -62 277 237 79 53 chr15 61119439 61119515 -40261006 - L2 LINE L2 -21 3251 3174 649 221 87 23 chr15 61120225 61120397 -40260124 + MIR3 SINE MIR 1 183 -25 1127 247 99 0 chr15 61120513 61120796 -40259725 + MLT1G LTR MaLR 278 588 -2 260 300 147 47 chr15 61121123 61121293 -40259228 - MIR SINE MIR -47 215 29 203 243 129 0 chr15 61121860 61121930 -40258591 - MIR SINE MIR -123 139 61 265 27 82 27 chr15 61122236 61122309 -40258212 + (CCGCG)n Simple_repeat Simple_repeat 4 80 0 259 289 53 0 chr15 61122957 61123033 -40257488 - MIR SINE MIR -76 186 107 190 274 0 0 chr15 61123577 61123628 -40256893 + MIR SINE MIR 82 132 -130 324 260 26 13 chr15 61124062 61124139 -40256382 + MIR3 SINE MIR 82 159 -49 228 315 130 9 chr15 61124717 61124825 -40255696 - L2 LINE L2 -10 3262 3142 1530 223 79 25 chr15 61124946 61125495 -40255026 - L1ME3A LINE L1 -86 6084 5478 263 231 0 62 chr15 61125549 61125614 -40254907 - MIR SINE MIR -181 81 21 234 271 21 42 chr15 61126479 61126575 -40253946 - MIR SINE MIR -94 168 75 413 170 107 45 chr15 61127294 61127406 -40253115 - MIR SINE MIR -63 145 27 333 312 160 16 chr15 61127579 61127704 -40252817 - MIR SINE MIR -96 166 24 2105 103 55 10 chr15 61127704 61127995 -40252526 - AluSx SINE Alu -8 304 1 1235 123 5 11 chr15 61129217 61129404 -40251117 + AluSg/x SINE Alu 118 303 -9 424 295 30 36 chr15 61129964 61130130 -40250391 - MIR SINE MIR -65 197 33 184 138 0 0 chr15 61131000 61131029 -40249492 + MIR SINE MIR 122 150 -112 690 256 56 0 chr15 61131046 61131206 -40249315 + MER5B DNA MER1_type 10 178 0 1052 142 0 6 chr15 61131316 61131478 -40249043 + FRAM SINE Alu 1 161 -5 189 278 144 11 chr15 61131591 61131681 -40248840 - MIR SINE MIR -57 205 104 217 333 18 53 chr15 61132199 61132313 -40248208 + MIR SINE MIR 23 132 -76 272 259 129 35 chr15 61132733 61132849 -40247672 + L2 LINE L2 3182 3308 -5 350 240 31 31 chr15 61133579 61133675 -40246846 + MIR SINE MIR 45 140 -122 293 268 79 47 chr15 61133824 61133951 -40246570 + MIR SINE MIR 39 169 -93 225 357 36 0 chr15 61134877 61134989 -40245532 - MIR SINE MIR 0 262 147 568 281 68 0 chr15 61135036 61135182 -40245339 - MIR SINE MIR -67 195 40 2373 99 10 0 chr15 61135418 61135721 -40244800 + AluSg SINE Alu 1 306 -4 321 197 33 0 chr15 61135789 61135850 -40244671 + MIR SINE MIR 78 140 -68 2420 143 42 42 chr15 61136536 61136863 -40243658 - MSTC LTR MaLR 0 428 99 2368 102 0 0 chr15 61136863 61137157 -40243364 - AluSx SINE Alu -14 298 5 2420 143 42 42 chr15 61137157 61137257 -40243264 - MSTC LTR MaLR -328 100 1 2050 144 3 10 chr15 61138025 61138338 -40242183 - AluSx SINE Alu -1 311 1 598 197 17 20 chr15 61140076 61140225 -40240296 + MIR SINE MIR 2 147 -62 473 228 70 13 chr15 61140863 61141021 -40239500 - L1MC5 LINE L1 -466 7495 7329 638 98 15 2 chr15 61141038 61141240 -40239281 - Charlie5 DNA MER1_type -29 2583 2332 1722 143 72 0 chr15 61141242 61141532 -40238989 - AluJb SINE Alu 0 309 1 1218 139 6 0 chr15 61141554 61141805 -40238716 - Charlie5 DNA MER1_type -2491 121 1 2211 133 17 0 chr15 61142075 61142377 -40238144 + AluSx SINE Alu 1 307 -5 692 256 135 0 chr15 61142391 61142621 -40237900 + MIR SINE MIR 2 262 0 358 282 0 29 chr15 61142635 61142738 -40237783 - MER5A DNA MER1_type -47 142 43 5064 141 43 25 chr15 61142860 61143747 -40236774 + MER4D LTR ERV1 1 903 0 348 347 90 30 chr15 61144018 61144185 -40236336 - MIR3 SINE MIR -29 179 3 2046 184 97 16 chr15 61144207 61144642 -40235879 - MLT-int LTR MaLR 0 1735 1266 742 190 36 82 chr15 61144850 61145045 -40235476 - MLT-int LTR MaLR -907 828 643 * 3379 177 38 20 chr15 61145043 61145726 -40234795 - MLT1A1-int LTR MaLR -1040 695 1 1733 167 80 15 chr15 61145729 61146065 -40234456 - MLT1A1 LTR MaLR -2 363 6 428 304 56 78 chr15 61147316 61147622 -40232899 - L2 LINE L2 -31 3241 2943 379 263 140 42 chr15 61147685 61147921 -40232600 - L2 LINE L2 -460 2854 2596 1992 140 10 7 chr15 61148212 61148512 -40232009 - AluJb SINE Alu -11 301 1 1845 171 0 16 chr15 61148523 61148832 -40231689 - AluJb SINE Alu -8 304 1 2284 106 0 17 chr15 61150263 61150565 -40229956 - AluSx SINE Alu -15 297 1 23370 108 26 13 chr15 61150609 61150759 -40229762 + L1MA3 LINE L1 16 163 -7402 2431 87 3 3 chr15 61150759 61151070 -40229451 - AluY SINE Alu 0 311 1 23370 108 26 13 chr15 61151070 61154490 -40226031 + L1MA3 LINE L1 163 3632 -3933 39522 67 8 2 chr15 61154499 61160612 -40219909 + L1PA5 LINE L1 5 6154 0 7915 174 71 38 chr15 61160609 61161082 -40219439 + L1MA3 LINE L1 3621 4077 -3647 * 2397 91 0 3 chr15 61161082 61161378 -40219143 + AluY SINE Alu 1 295 -16 7915 174 71 38 chr15 61161378 61162101 -40218420 + L1MA3 LINE L1 4077 4775 -2949 1899 160 3 0 chr15 61162101 61162388 -40218133 + AluJb SINE Alu 1 288 -24 7915 174 71 38 chr15 61162388 61164685 -40215836 + L1MA3 LINE L1 4775 7415 -309 2115 94 20 0 chr15 61164685 61164977 -40215544 + L1PB1 LINE L1 5844 6148 -3 1955 110 27 34 chr15 61164981 61165309 -40215212 + L1MA3 LINE L1 7399 7724 0 2274 114 0 0 chr15 61165713 61166011 -40214510 - AluSx SINE Alu -14 298 1 207 162 0 0 chr15 61166097 61166134 -40214387 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 183 355 164 27 chr15 61166223 61166333 -40214188 - L2 LINE L2 -4 3268 3144 570 212 106 20 chr15 61167106 61167257 -40213264 - MIR SINE MIR -56 206 43 29 0 0 0 chr15 61167364 61167393 -40213128 + AT_rich Low_complexity Low_complexity 1 29 0 1812 157 20 27 chr15 61167452 61167745 -40212776 + AluJo SINE Alu 1 291 -21 22 35 0 0 chr15 61167779 61167808 -40212713 + AT_rich Low_complexity Low_complexity 1 29 0 380 260 39 1 chr15 61168117 61168230 -40212291 - MIR SINE MIR -57 151 40 437 201 119 124 chr15 61168975 61169169 -40211352 + MIR SINE MIR 13 205 -57 2181 133 131 11 chr15 61169331 61169670 -40210851 + MSTA LTR MaLR 1 392 -36 2216 126 0 10 chr15 61169670 61169980 -40210541 - AluSx SINE Alu -1 311 5 2181 133 131 11 chr15 61169980 61170022 -40210499 + MSTA LTR MaLR 392 428 0 723 224 87 31 chr15 61170281 61170477 -40210044 - MIR SINE MIR -53 209 3 257 283 100 42 chr15 61170530 61170650 -40209871 - L2 LINE L2 -1 3312 3186 333 200 200 0 chr15 61171260 61171355 -40209166 + MIR3 SINE MIR 78 191 -17 441 256 77 19 chr15 61171443 61171599 -40208922 - MIR SINE MIR -52 210 46 384 291 115 6 chr15 61172192 61172357 -40208164 - MIR3 SINE MIR -22 186 4 590 178 0 0 chr15 61172815 61172905 -40207616 + FLAM_A SINE Alu 10 99 -43 434 278 125 17 chr15 61173284 61173460 -40207061 + MIR SINE MIR 61 255 -7 2240 117 0 13 chr15 61174072 61174380 -40206141 - AluSx SINE Alu -8 304 1 193 353 76 50 chr15 61174430 61174524 -40205997 + MIR SINE MIR 7 97 -165 1907 164 7 13 chr15 61174524 61174829 -40205692 - AluJo SINE Alu -9 303 1 193 353 76 50 chr15 61174829 61174972 -40205549 + MIR SINE MIR 97 250 -12 329 292 120 62 chr15 61174993 61175284 -40205237 - L2 LINE L2 -17 3255 2948 2219 129 0 3 chr15 61175391 61175702 -40204819 - AluSx SINE Alu -2 310 1 22 0 0 0 chr15 61176320 61176342 -40204179 + AT_rich Low_complexity Low_complexity 1 22 0 192 336 55 39 chr15 61176749 61176877 -40203644 - L2 LINE L2 -249 3023 2894 1332 163 136 116 chr15 61176904 61177215 -40203306 - L1MB8 LINE L1 0 6178 5852 2236 111 0 3 chr15 61177215 61177541 -40202980 - AluSx SINE Alu 0 312 2 1332 163 136 116 chr15 61177541 61177738 -40202783 - L1MB8 LINE L1 -326 5852 5660 214 250 19 0 chr15 61178252 61178304 -40202217 - MIR SINE MIR -95 167 115 195 204 0 0 chr15 61178556 61178600 -40201921 + T-rich Low_complexity Low_complexity 1 44 0 443 311 184 15 chr15 61179581 61179787 -40200734 - MIR SINE MIR -21 241 1 202 215 31 15 chr15 61179794 61179859 -40200662 - L2 LINE L2 -88 3225 3160 218 272 99 12 chr15 61180025 61180106 -40200415 - MIR SINE MIR -103 105 18 419 225 38 2 chr15 61180580 61180729 -40199792 + MER63A DNA MER1_type 1 188 -22 1971 162 3 0 chr15 61180970 61181272 -40199249 - AluJo SINE Alu -9 303 1 2231 102 10 0 chr15 61181343 61181637 -40198884 - AluSx SINE Alu -10 302 6 673 261 80 63 chr15 61181897 61182580 -40197941 + L1MEd LINE L1 812 1559 -4751 2233 132 0 0 chr15 61182580 61182884 -40197637 + AluSx SINE Alu 1 304 -8 673 261 80 63 chr15 61182884 61182907 -40197614 + L1MEd LINE L1 1559 1580 -4730 1889 159 7 7 chr15 61183111 61183412 -40197109 + AluSx SINE Alu 1 301 -11 2460 92 3 0 chr15 61183414 61183720 -40196801 + AluSx SINE Alu 1 307 -5 1915 154 17 3 chr15 61184075 61184373 -40196148 + AluJo SINE Alu 1 302 -10 486 199 49 53 chr15 61184373 61184427 -40196094 - MER5C DNA MER1_type -56 268 215 2372 104 3 0 chr15 61184427 61184736 -40195785 + AluSq SINE Alu 1 310 -3 486 199 49 53 chr15 61184736 61184890 -40195631 - MER5C DNA MER1_type -109 215 1 277 333 40 27 chr15 61184891 61185188 -40195333 + L1ME3A LINE L1 5650 5950 -220 30 0 0 0 chr15 61185409 61185439 -40195082 + AT_rich Low_complexity Low_complexity 1 30 0 2313 113 7 3 chr15 61185475 61185785 -40194736 - AluSp SINE Alu -2 311 1 2140 131 0 7 chr15 61185785 61186082 -40194439 - AluSx SINE Alu -13 299 5 204 205 0 0 chr15 61186545 61186584 -40193937 + CT-rich Low_complexity Low_complexity 4 42 0 1844 214 8 27 chr15 61186665 61186879 -40193642 - MLT1A1 LTR MaLR -2 363 157 1844 169 3 19 chr15 61186879 61187192 -40193329 - AluJb SINE Alu -4 308 1 1844 214 8 27 chr15 61187192 61187347 -40193174 - MLT1A1 LTR MaLR -208 157 1 212 289 26 13 chr15 61187887 61187963 -40192558 - L2 LINE L2 -2 3311 3235 487 286 76 32 chr15 61188017 61188202 -40192319 - MIR SINE MIR -48 214 22 2314 102 7 0 chr15 61188754 61189048 -40191473 - AluSg SINE Alu -14 296 1 203 182 39 65 chr15 61189106 61189183 -40191338 + CT-rich Low_complexity Low_complexity 3 77 0 442 316 40 11 chr15 61189259 61189436 -40191085 + MIR SINE MIR 50 231 -31 619 213 97 13 chr15 61189691 61189846 -40190675 + MER5B DNA MER1_type 8 175 -3 1736 125 29 53 chr15 61189944 61190225 -40190296 + AluJo SINE Alu 24 297 -15 310 278 112 35 chr15 61190266 61190435 -40190086 - L2 LINE L2 -2 3270 3089 731 220 108 46 chr15 61190762 61191003 -40189518 - MIR SINE MIR 0 262 7 253 378 56 14 chr15 61191000 61191143 -40189378 - L2 LINE L2 -731 2583 2435 * 396 0 0 0 chr15 61192247 61192291 -40188230 + (TG)n Simple_repeat Simple_repeat 1 44 0 228 216 0 0 chr15 61192529 61192580 -40187941 - MER115 DNA AcHobo -490 203 153 876 138 0 23 chr15 61193984 61194114 -40186407 + FLAM_C SINE Alu 1 127 -16 231 242 62 140 chr15 61195732 61195910 -40184611 - MIR SINE MIR -41 221 58 275 201 153 51 chr15 61196538 61196688 -40183833 - MIR SINE MIR -36 172 16 324 327 18 86 chr15 61196750 61197028 -40183493 - L2 LINE L2 0 3272 3014 283 235 15 0 chr15 61197422 61197490 -40183031 - HsTC2 DNA Tc2 -3 1895 1827 394 297 56 53 chr15 61197551 61197817 -40182704 + L1MEd LINE L1 357 623 -5496 328 263 105 0 chr15 61197837 61197932 -40182589 - HsTC2 DNA Tc2 -1793 105 1 2263 107 0 29 chr15 61198184 61198494 -40182027 + AluSx SINE Alu 1 301 -11 2028 118 4 7 chr15 61199128 61199408 -40181113 - AluSx SINE Alu -33 279 1 719 277 47 42 chr15 61200375 61200577 -40179944 - L1MC5 LINE L1 -47 7914 7714 2515 105 0 0 chr15 61200577 61200890 -40179631 - AluSq SINE Alu 0 313 1 719 277 47 42 chr15 61200890 61201091 -40179430 - L1MC5 LINE L1 -247 7714 7509 1261 128 5 10 chr15 61202812 61203015 -40177506 - MER2 DNA MER2_type -135 210 9 572 285 196 6 chr15 61203092 61203406 -40177115 - L2 LINE L2 -221 3092 2714 223 270 0 16 chr15 61203565 61203628 -40176893 + CT-rich Low_complexity Low_complexity 4 65 0 2118 164 17 30 chr15 61204601 61205004 -40175517 - L1MB7 LINE L1 -19 6165 5768 517 170 170 22 chr15 61205097 61205232 -40175289 - MIR SINE MIR 0 262 108 211 297 0 31 chr15 61205214 61205278 -40175243 - L2 LINE L2 -203 3069 3008 * 633 227 73 0 chr15 61206538 61206688 -40173833 + MIR SINE MIR 1 161 -101 2455 96 3 0 chr15 61206722 61207034 -40173487 - AluSp SINE Alu 0 313 1 1570 192 0 55 chr15 61207114 61207422 -40173099 + AluJo SINE Alu 1 291 -21 2232 115 0 0 chr15 61208156 61208452 -40172069 - AluSx SINE Alu -16 296 1 1736 180 3 3 chr15 61210251 61210546 -40169975 + AluJb SINE Alu 1 295 -17 1886 169 50 21 chr15 61210601 61210980 -40169541 + MLT1B LTR MaLR 1 390 0 418 271 58 39 chr15 61211797 61211952 -40168569 - MIR3 SINE MIR -39 169 12 370 293 28 0 chr15 61212173 61212279 -40168242 - L2 LINE L2 -12 3301 3193 351 344 81 11 chr15 61213638 61213824 -40166697 - MIR SINE MIR -51 211 13 198 0 0 0 chr15 61213954 61213976 -40166545 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2015 120 14 3 chr15 61213976 61214259 -40166262 - AluSq SINE Alu -27 286 1 2191 95 0 3 chr15 61214690 61215027 -40165494 - AluSc SINE Alu 0 336 1 376 250 66 22 chr15 61215381 61215517 -40165004 + MIR SINE MIR 36 177 -85 1443 191 163 39 chr15 61215670 61216211 -40164310 - LTR48 LTR ERV1 -49 595 31 2225 97 21 0 chr15 61216547 61216836 -40163685 - AluY SINE Alu -16 295 1 2039 155 10 45 chr15 61216966 61217367 -40163154 - MLT1B LTR MaLR 0 390 4 1226 101 0 0 chr15 61217673 61217832 -40162689 + AluSg/x SINE Alu 142 300 -12 2392 119 0 0 chr15 61218000 61218311 -40162210 + AluSq SINE Alu 1 311 -2 222 128 0 0 chr15 61218665 61218704 -40161817 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 913 261 32 84 chr15 61219083 61219463 -40161058 + LTR16B LTR ERVL 105 464 0 679 188 143 13 chr15 61219574 61219728 -40160793 + FAM SINE Alu 1 174 -1 2275 102 3 0 chr15 61219794 61220087 -40160434 + AluSq SINE Alu 1 294 -19 423 0 0 0 chr15 61220505 61220552 -40159969 + (TG)n Simple_repeat Simple_repeat 2 48 0 203 244 9 0 chr15 61220622 61220737 -40159784 + (TG)n Simple_repeat Simple_repeat 2 117 0 216 170 0 0 chr15 61220800 61220853 -40159668 + (TG)n Simple_repeat Simple_repeat 2 54 0 404 272 34 41 chr15 61222233 61222380 -40158141 - L3 LINE CR1 -131 1446 1301 210 291 82 0 chr15 61222511 61222645 -40157876 - L2 LINE L2 -214 3058 2914 757 161 136 7 chr15 61222811 61222966 -40157555 + MER5A DNA MER1_type 1 175 -14 582 193 9 9 chr15 61223114 61223223 -40157298 + MER81 DNA DNA 5 113 -1 689 144 8 8 chr15 61224249 61224367 -40156154 + FRAM SINE Alu 49 166 -10 449 266 79 54 chr15 61224428 61224630 -40155891 + MIR SINE MIR 3 207 -55 442 282 116 28 chr15 61225116 61225332 -40155189 - MIR SINE MIR -23 239 5 351 288 27 0 chr15 61225323 61225434 -40155087 + MIR SINE MIR 27 140 -68 * 407 252 106 8 chr15 61226386 61226509 -40154012 - MIR SINE MIR -108 154 20 1786 149 7 28 chr15 61227053 61227365 -40153156 + AluSx SINE Alu 6 311 0 1658 224 117 18 chr15 61228060 61228605 -40151916 - L1MC4a LINE L1 -1896 5912 5314 375 324 62 17 chr15 61228623 61228802 -40151719 + L1M4 LINE L1 5091 5277 -869 409 259 86 0 chr15 61228877 61228993 -40151528 - MIR SINE MIR -67 195 70 204 319 75 0 chr15 61229025 61229119 -40151402 + MIR SINE MIR 44 144 -118 1567 184 15 12 chr15 61230437 61230774 -40149747 + L1MB8 LINE L1 5840 6177 -1 2560 70 0 6 chr15 61230785 61231098 -40149423 + AluY SINE Alu 1 311 0 322 54 0 0 chr15 61231442 61231498 -40149023 + L1MB4 LINE L1 6125 6180 0 278 319 101 0 chr15 61231568 61231687 -40148834 - MIR SINE MIR 0 262 132 1127 198 127 19 chr15 61231930 61232198 -40148323 + AluSg SINE Alu 6 302 -8 484 352 34 21 chr15 61233650 61233883 -40146638 + MIR SINE MIR 21 256 -6 234 264 129 21 chr15 61234438 61234631 -40145890 - L1ME4a LINE L1 -2 6119 5906 1769 80 0 40 chr15 61234650 61234901 -40145620 - AluSg/x SINE Alu 0 312 72 318 106 0 0 chr15 61235437 61235484 -40145037 + (GGAA)n Simple_repeat Simple_repeat 4 50 0 2468 182 161 11 chr15 61235509 61236124 -40144397 + MER39 LTR ERV1 1 707 0 342 321 26 5 chr15 61236221 61236342 -40144179 - MIR SINE MIR -58 150 33 776 100 25 8 chr15 61236367 61236487 -40144034 - MER85 DNA T2_type -4 135 14 2027 144 21 0 chr15 61236489 61236780 -40143741 + AluSx SINE Alu 1 297 -15 433 222 0 0 chr15 61237050 61237165 -40143356 + FRAM SINE Alu 66 180 0 286 275 0 0 chr15 61237970 61238039 -40142482 + MIR SINE MIR 30 98 -110 2314 104 7 0 chr15 61238092 61238389 -40142132 + AluSx SINE Alu 1 299 -13 272 296 14 0 chr15 61238746 61238817 -40141704 + CT-rich Low_complexity Low_complexity 1 72 0 219 177 21 167 chr15 61239123 61239219 -40141302 - MIR SINE MIR -64 198 117 2509 87 0 0 chr15 61239480 61239789 -40140732 + AluSx SINE Alu 4 312 0 415 239 197 13 chr15 61240220 61240454 -40140067 + L1ME4a LINE L1 5834 6110 -11 350 199 28 122 chr15 61240454 61240612 -40139909 - MLT1I LTR MaLR -2 577 425 388 256 77 52 chr15 61240656 61240903 -40139618 - MLT1I LTR MaLR -103 306 68 1780 157 7 4 chr15 61241093 61241409 -40139112 - AluJb SINE Alu 0 317 1 592 295 41 54 chr15 61241653 61241948 -40138573 - L2 LINE L2 -2 3311 3021 212 316 53 15 chr15 61242544 61242639 -40137882 - L2 LINE L2 -213 3059 2956 1998 163 3 0 chr15 61242639 61242939 -40137582 + AluJo SINE Alu 8 308 -4 212 316 53 15 chr15 61242939 61242976 -40137545 - L2 LINE L2 -316 2956 2922 2177 103 0 3 chr15 61243322 61243628 -40136893 + AluSx SINE Alu 1 305 0 2345 103 10 0 chr15 61244220 61244520 -40136001 + AluSx SINE Alu 1 303 -9 855 260 61 41 chr15 61244873 61245215 -40135306 - LTR16B LTR ERVL 0 464 116 250 291 169 54 chr15 61245218 61245330 -40135191 + MIR SINE MIR 88 222 -40 2389 75 14 7 chr15 61245330 61245623 -40134898 + AluY SINE Alu 5 299 -12 250 291 169 54 chr15 61245623 61245658 -40134863 + MIR SINE MIR 222 252 -10 2210 130 0 0 chr15 61245941 61246240 -40134281 - AluSx SINE Alu -13 299 1 187 287 103 49 chr15 61246454 61246677 -40133844 + L2 LINE L2 2820 3054 -218 368 182 52 86 chr15 61246715 61246831 -40133690 + MIR SINE MIR 102 212 -50 285 250 167 21 chr15 61246954 61247098 -40133423 + MIR3 SINE MIR 19 183 -25 581 275 50 22 chr15 61247920 61248102 -40132419 - MIR SINE MIR -29 233 47 246 32 0 0 chr15 61248190 61248221 -40132300 + (TG)n Simple_repeat Simple_repeat 2 32 0 1413 187 8 12 chr15 61248221 61248467 -40132054 - AluJo SINE Alu -26 286 42 344 346 92 0 chr15 61249110 61249263 -40131258 + MIR SINE MIR 90 256 -6 289 294 20 20 chr15 61249639 61249741 -40130780 + MIR3 SINE MIR 3 104 -104 2843 147 25 39 chr15 61249826 61249899 -40130622 + L1MB3 LINE L1 5585 5658 -525 1634 175 11 18 chr15 61249899 61250185 -40130336 + AluJb SINE Alu 1 284 -28 2843 147 25 39 chr15 61250185 61250677 -40129844 + L1MB3 LINE L1 5658 6142 -41 1043 135 0 0 chr15 61250677 61250825 -40129696 + FRAM SINE Alu 29 176 0 2157 64 31 80 chr15 61250886 61251213 -40129308 + AluY SINE Alu 1 311 0 2493 70 0 0 chr15 61352252 61352554 -40027967 + AluY SINE Alu 1 302 -9 874 155 0 0 chr15 61352677 61352806 -40027715 - AluSq/x SINE Alu -184 129 1 5267 180 21 22 chr15 61352901 61354510 -40026011 - L1MC2 LINE L1 -9 6335 4735 1449 189 82 10 chr15 61354513 61354804 -40025717 - AluJo SINE Alu 0 312 1 2233 97 26 10 chr15 61355824 61356132 -40024389 - AluSq SINE Alu 0 313 1 1646 171 10 26 chr15 61356304 61356470 -40024051 - AluJb SINE Alu -13 299 139 2263 110 7 0 chr15 61356470 61356770 -40023751 - AluSq SINE Alu -11 302 1 1646 171 10 26 chr15 61356770 61356907 -40023614 - AluJb SINE Alu -173 139 1 53 0 0 0 chr15 61356928 61356981 -40023540 + AT_rich Low_complexity Low_complexity 1 53 0 995 199 0 6 chr15 61356981 61357157 -40023364 - FAM SINE Alu 0 175 1 2232 88 7 3 chr15 61357839 61358123 -40022398 + AluSq SINE Alu 1 308 0 208 0 0 0 chr15 61358123 61358146 -40022375 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 2176 117 13 3 chr15 61358325 61358632 -40021889 - AluSx SINE Alu -2 310 1 403 154 26 13 chr15 61360201 61360279 -40020242 - MER5A DNA MER1_type -84 105 27 22 25 0 25 chr15 61360611 61360632 -40019889 + AT_rich Low_complexity Low_complexity 1 22 -17 2528 50 0 13 chr15 61360632 61360930 -40019591 - AluY SINE Alu -17 294 1 22 25 0 25 chr15 61360930 61360948 -40019573 + AT_rich Low_complexity Low_complexity 22 39 0 1927 122 7 33 chr15 61361183 61361487 -40019034 - AluSx SINE Alu -16 296 1 1547 164 67 27 chr15 61362512 61362811 -40017710 - AluJo SINE Alu -1 311 1 858 310 24 38 chr15 61362813 61363152 -40017369 + L2 LINE L2 2911 3244 -69 216 0 0 0 chr15 61363276 61363300 -40017221 + (A)n Simple_repeat Simple_repeat 1 24 0 2334 96 3 0 chr15 61363352 61363655 -40016866 - AluSq SINE Alu -9 304 1 324 352 123 18 chr15 61363659 61363817 -40016704 - L2 LINE L2 -2 3270 3079 1863 179 0 0 chr15 61363817 61364113 -40016408 + AluJb SINE Alu 1 296 -16 324 352 123 18 chr15 61364113 61364181 -40016340 - L2 LINE L2 -193 3079 3020 207 386 41 23 chr15 61364294 61364514 -40016007 - L2 LINE L2 -433 2881 2658 865 80 104 0 chr15 61364886 61365011 -40015510 + MER85 DNA T2_type 1 138 -1 968 86 0 0 chr15 61365172 61365288 -40015233 - AluY SINE Alu -195 116 1 2499 78 0 3 chr15 61365302 61365608 -40014913 - AluSq SINE Alu -8 305 1 2245 99 0 3 chr15 61365863 61366156 -40014365 + AluSx SINE Alu 1 292 -20 21 57 0 0 chr15 61366265 61366300 -40014221 + AT_rich Low_complexity Low_complexity 1 35 0 1806 148 82 3 chr15 61366310 61366601 -40013920 - MER1B DNA MER1_type -2 337 24 427 325 88 16 chr15 61366645 61366894 -40013627 - L1MC/D LINE L1 -2168 5640 5374 1980 109 3 21 chr15 61367285 61367592 -40012929 - AluSc SINE Alu 0 302 1 2361 65 0 39 chr15 61368008 61368318 -40012203 - AluY SINE Alu -13 298 1 2244 102 0 3 chr15 61368625 61368928 -40011593 - AluSq SINE Alu 0 304 3 1511 91 0 0 chr15 61369221 61369408 -40011113 + AluSq SINE Alu 1 187 -126 474 145 0 0 chr15 61369408 61369470 -40011051 + AluSq SINE Alu 226 287 -26 221 57 29 0 chr15 61369470 61369505 -40011016 + (TTAAA)n Simple_repeat Simple_repeat 3 38 0 3585 139 60 88 chr15 61369538 61369589 -40010932 - L1PB4 LINE L1 -40 6116 6066 2166 188 51 127 chr15 61369589 61369870 -40010651 - L1PA11 LINE L1 -107 6067 5766 290 60 0 60 chr15 61369870 61369920 -40010601 + (TG)n Simple_repeat Simple_repeat 2 48 0 2166 188 51 127 chr15 61369920 61370680 -40009841 - L1PA11 LINE L1 -408 5766 5117 2032 134 0 16 chr15 61371040 61371345 -40009176 - AluSx SINE Alu -12 300 1 219 114 0 0 chr15 61371628 61371640 -40008881 + (CA)n Simple_repeat Simple_repeat 1 47 0 219 114 0 0 chr15 61371640 61371675 -40008846 + (CA)n Simple_repeat Simple_repeat 2 36 0 913 156 0 0 chr15 61372055 61372196 -40008325 - FLAM_C SINE Alu -2 141 1 2525 57 0 3 chr15 61372412 61372708 -40007813 + AluY SINE Alu 1 295 -16 240 317 171 54 chr15 61372842 61373082 -40007439 + L2 LINE L2 2957 3224 -48 387 0 0 0 chr15 61373108 61373151 -40007370 + (CA)n Simple_repeat Simple_repeat 2 44 0 1524 159 42 46 chr15 61373626 61373909 -40006612 + AluJo SINE Alu 1 282 -30 1745 181 28 3 chr15 61374234 61374521 -40006000 + AluJo SINE Alu 3 296 -16 2417 91 0 0 chr15 61374523 61374831 -40005690 + AluSc SINE Alu 1 308 -1 2144 111 34 0 chr15 61374847 61375144 -40005377 - AluSx SINE Alu -5 307 1 944 211 0 28 chr15 61375305 61375485 -40005036 + FAM SINE Alu 1 175 0 981 178 0 23 chr15 61375525 61375675 -40004846 + AluSg/x SINE Alu 128 275 -35 8887 68 7 0 chr15 61375675 61377553 -40002968 + L1PA7 LINE L1 4253 6146 -8 981 178 0 23 chr15 61377553 61377576 -40002945 + AluSg/x SINE Alu 275 297 -13 389 339 0 8 chr15 61377687 61377805 -40002716 - L2 LINE L2 -12 3260 3144 923 220 0 11 chr15 61377902 61378079 -40002442 - FAM SINE Alu 0 175 1 3768 159 44 33 chr15 61378159 61378890 -40001631 - L1MA7 LINE L1 -12 6279 5541 536 183 25 1 chr15 61378891 61379011 -40001510 + L1M3 LINE L1 5456 5581 -590 266 159 14 43 chr15 61379740 61379809 -40000712 - L1MB8 LINE L1 0 6178 6112 699 269 0 12 chr15 61379812 61379979 -40000542 - AluJo SINE Alu -1 311 147 333 0 0 0 chr15 61380001 61380038 -40000483 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2007 154 3 0 chr15 61380053 61380364 -40000157 + AluSx SINE Alu 1 312 0 1893 195 91 25 chr15 61380409 61380840 -39999681 + LTR2B LTR ERV1 32 490 0 2274 90 3 0 chr15 61380896 61381186 -39999335 - AluSx SINE Alu -21 291 1 347 253 72 18 chr15 61381195 61381361 -39999160 - L1M4 LINE L1 -2122 4024 3850 890 176 13 13 chr15 61381425 61381584 -39998937 - AluJo SINE Alu -142 170 12 41 36 0 0 chr15 61381926 61381981 -39998540 + AT_rich Low_complexity Low_complexity 1 55 0 222 37 0 0 chr15 61382331 61382358 -39998163 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 324 146 0 0 chr15 61382360 61382408 -39998113 - AluJb SINE Alu -21 281 234 2329 111 0 0 chr15 61382408 61382705 -39997816 - AluSx SINE Alu -15 297 1 1482 143 8 13 chr15 61382710 61382948 -39997573 - AluJb SINE Alu -75 237 1 1689 108 4 24 chr15 61383340 61383590 -39996931 - AluSx SINE Alu -12 300 56 1517 150 124 7 chr15 61383712 61383986 -39996535 - AluJb SINE Alu -6 306 1 459 258 48 87 chr15 61384100 61384191 -39996330 - Charlie8 DNA MER1_type -2151 266 173 2351 115 0 0 chr15 61384191 61384503 -39996018 + AluSx SINE Alu 1 312 0 459 258 48 87 chr15 61384503 61384640 -39995881 - Charlie8 DNA MER1_type -2244 173 47 1781 181 0 25 chr15 61385038 61385358 -39995163 - AluJo SINE Alu 0 312 1 769 171 0 0 chr15 61386185 61386296 -39994225 - FLAM_C SINE Alu -31 112 2 1663 134 45 62 chr15 61386327 61386619 -39993902 + AluJb SINE Alu 1 287 -25 1629 162 40 26 chr15 61386719 61387021 -39993500 - AluJo SINE Alu -6 306 1 2373 91 3 0 chr15 61387161 61387459 -39993062 - AluSp SINE Alu -14 299 1 441 219 47 39 chr15 61387720 61387848 -39992673 - MIR SINE MIR -15 247 119 1992 175 40 37 chr15 61388010 61388558 -39991963 + MLT2A2 LTR ERVL 1 554 0 509 283 103 13 chr15 61389461 61389638 -39990883 - MIR SINE MIR 0 262 60 183 100 0 0 chr15 61389638 61389668 -39990853 + (CAGAGA)n Simple_repeat Simple_repeat 1 30 0 509 283 103 13 chr15 61389668 61389708 -39990813 - MIR SINE MIR -202 60 25 1798 188 0 3 chr15 61389830 61390118 -39990403 - AluSx SINE Alu -25 287 1 2144 119 3 0 chr15 61390154 61390448 -39990073 + AluSx SINE Alu 1 295 -17 43892 30 23 1 chr15 61390452 61396488 -39984033 + L1PA2 LINE L1 1 6168 0 22 88 0 0 chr15 61396506 61396563 -39983958 + AT_rich Low_complexity Low_complexity 1 57 0 686 200 14 0 chr15 61396616 61396761 -39983760 + L1PBa LINE L1 2087 2233 -4630 2292 117 0 0 chr15 61396762 61397070 -39983451 + AluSq SINE Alu 1 308 -5 2268 194 123 38 chr15 61397074 61397105 -39983416 + L1PBa LINE L1 2632 2659 -4203 1027 120 0 0 chr15 61397105 61397238 -39983283 + FLAM_C SINE Alu 1 133 0 2268 194 123 38 chr15 61397238 61397936 -39982585 + L1PBa LINE L1 2659 3428 -3434 1134 118 0 30 chr15 61397936 61398105 -39982416 - AluSx SINE Alu -148 164 1 3592 141 2 38 chr15 61398120 61398667 -39981854 - MER1A DNA MER1_type 0 527 1 326 236 11 56 chr15 61399720 61399809 -39980712 + L2 LINE L2 3188 3272 0 203 247 13 39 chr15 61399811 61399888 -39980633 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 21 0 0 0 chr15 61400242 61400263 -39980258 + AT_rich Low_complexity Low_complexity 1 21 0 736 206 0 8 chr15 61400265 61400396 -39980125 + FLAM_A SINE Alu 3 132 -1 2322 107 0 0 chr15 61400733 61401041 -39979480 + AluSx SINE Alu 1 308 -4 1458 182 64 7 chr15 61401138 61401418 -39979103 - AluJo SINE Alu -16 296 1 3132 186 94 9 chr15 61401421 61402104 -39978417 - L1MB4 LINE L1 0 6180 5440 2306 106 3 3 chr15 61402205 61402516 -39978005 + AluSp SINE Alu 1 311 -2 2095 124 3 0 chr15 61402523 61402814 -39977707 + AluSq SINE Alu 1 292 -21 864 219 0 83 chr15 61402946 61403081 -39977440 + MER5A DNA MER1_type 1 115 -74 2151 102 0 0 chr15 61403081 61403387 -39977134 - AluSx SINE Alu 0 312 14 864 219 0 83 chr15 61403387 61403456 -39977065 + MER5A DNA MER1_type 115 188 -1 273 293 60 35 chr15 61403723 61403955 -39976566 - L1M4 LINE L1 -3164 2982 2745 251 314 57 0 chr15 61404185 61404325 -39976196 - L1M4 LINE L1 -3605 2541 2394 1705 169 0 14 chr15 61404471 61404750 -39975771 + AluJb SINE Alu 13 287 -25 1028 106 0 68 chr15 61404750 61404777 -39975744 - AluSc SINE Alu -159 150 123 2944 9 0 0 chr15 61404777 61405092 -39975429 - AluYb8 SINE Alu -3 315 1 1028 106 0 68 chr15 61405092 61405225 -39975296 - AluSc SINE Alu -186 123 1 1458 155 13 9 chr15 61405282 61405508 -39975013 - AluJo SINE Alu -31 281 55 487 249 67 12 chr15 61405968 61406133 -39974388 + MIR SINE MIR 29 202 -60 23 0 0 0 chr15 61406500 61406523 -39973998 + AT_rich Low_complexity Low_complexity 1 23 0 1022 195 5 41 chr15 61406595 61406790 -39973731 - MER5A DNA MER1_type 0 189 2 1500 97 5 0 chr15 61406800 61406995 -39973526 + AluSp SINE Alu 83 278 -35 252 0 0 0 chr15 61406996 61407024 -39973497 + (CA)n Simple_repeat Simple_repeat 2 29 0 461 191 224 34 chr15 61407198 61407345 -39973176 - MER5B DNA MER1_type -2 176 2 530 300 32 8 chr15 61408495 61408663 -39971858 + MIR3 SINE MIR 32 205 -3 2093 101 32 0 chr15 61409589 61409867 -39970654 - AluSc SINE Alu -21 288 2 614 200 95 0 chr15 61409899 61410004 -39970517 + FLAM_C SINE Alu 3 117 -26 36 0 0 0 chr15 61410005 61410041 -39970480 + AT_rich Low_complexity Low_complexity 1 36 0 2564 187 45 66 chr15 61410041 61410210 -39970311 + L1MC2 LINE L1 4921 5092 -1252 2126 123 0 0 chr15 61410210 61410545 -39969976 - AluSq SINE Alu 0 335 1 2564 187 45 66 chr15 61410545 61411258 -39969263 + L1MC2 LINE L1 5092 5818 -526 912 139 8 0 chr15 61411258 61411387 -39969134 + FLAM_A SINE Alu 2 131 -2 2564 187 45 66 chr15 61411387 61411513 -39969008 + L1MC2 LINE L1 5818 5945 -399 2181 102 3 3 chr15 61411513 61411806 -39968715 + AluSc SINE Alu 1 293 -16 2564 187 45 66 chr15 61411806 61412269 -39968252 + L1MC2 LINE L1 5945 6320 -24 2319 88 0 16 chr15 61412637 61412943 -39967578 + AluSq SINE Alu 1 301 -12 857 156 0 22 chr15 61413582 61413717 -39966804 + FLAM_A SINE Alu 2 133 0 21 0 0 0 chr15 61413717 61413738 -39966783 + AT_rich Low_complexity Low_complexity 1 21 0 2429 60 0 26 chr15 61413999 61414301 -39966220 + AluY SINE Alu 1 294 -17 1276 138 32 0 chr15 61414946 61415164 -39965357 + AluSg/x SINE Alu 88 312 0 1638 175 42 7 chr15 61415299 61415584 -39964937 - AluJo SINE Alu -17 295 1 1812 145 199 100 chr15 61415705 61415758 -39964763 + MLT2B3 LTR ERVL 1 47 -507 2290 82 7 0 chr15 61415758 61416049 -39964472 + AluSp SINE Alu 21 313 0 1812 145 199 100 chr15 61416049 61416493 -39964028 + MLT2B3 LTR ERVL 47 547 -7 1787 169 0 7 chr15 61416718 61417013 -39963508 - AluJb SINE Alu -15 297 5 327 25 0 0 chr15 61417014 61417054 -39963467 + (TG)n Simple_repeat Simple_repeat 2 41 0 516 97 0 0 chr15 61417061 61417133 -39963388 - AluJ/FLAM SINE Alu -239 73 2 1673 65 5 9 chr15 61417576 61417792 -39962729 + AluY SINE Alu 83 297 -14 26 0 0 0 chr15 61417792 61417818 -39962703 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr15 61418690 61418711 -39961810 + AT_rich Low_complexity Low_complexity 1 21 0 2072 93 14 7 chr15 61418721 61419001 -39961520 - AluSx SINE Alu -28 284 3 253 338 89 9 chr15 61419095 61419227 -39961294 + MIR SINE MIR 4 142 -66 806 173 0 0 chr15 61419754 61419887 -39960634 + FLAM_C SINE Alu 11 143 0 2250 89 31 0 chr15 61420103 61420396 -39960125 - AluSx SINE Alu -10 302 1 262 99 50 99 chr15 61420406 61420547 -39959974 + (TTATA)n Simple_repeat Simple_repeat 5 138 0 1978 151 3 0 chr15 61420574 61420878 -39959643 + AluSx SINE Alu 1 305 -7 2455 66 0 13 chr15 61421003 61421304 -39959217 + AluSx SINE Alu 1 297 -15 2329 87 0 3 chr15 61421550 61421849 -39958672 - AluSc SINE Alu -11 298 1 2266 111 3 3 chr15 61422083 61422389 -39958132 + AluSx SINE Alu 1 306 -6 2094 112 14 10 chr15 61422389 61422518 -39958003 + AluSx SINE Alu 1 128 -184 216 0 0 0 chr15 61422518 61422542 -39957979 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2094 112 14 10 chr15 61422542 61422706 -39957815 + AluSx SINE Alu 128 296 -16 852 40 20 0 chr15 61422900 61422999 -39957522 - AluSq/x SINE Alu -184 129 29 1676 196 7 0 chr15 61423016 61423307 -39957214 - AluJb SINE Alu -17 295 3 2350 66 13 26 chr15 61423546 61423851 -39956670 - AluY SINE Alu -10 301 1 323 187 55 0 chr15 61423907 61423998 -39956523 - L1ME4a LINE L1 -27 6094 5999 315 241 153 44 chr15 61424058 61424195 -39956326 - L1ME4a LINE L1 -66 6055 5904 222 250 54 18 chr15 61424197 61424253 -39956268 + L2 LINE L2 3249 3306 -7 25 0 0 0 chr15 61424566 61424591 -39955930 + AT_rich Low_complexity Low_complexity 1 25 0 2533 66 0 0 chr15 61424718 61425023 -39955498 + AluY SINE Alu 1 305 -6 1640 187 0 7 chr15 61425243 61425537 -39954984 - AluJo SINE Alu -17 295 4 1173 141 0 22 chr15 61426134 61426302 -39954219 - AluSc SINE Alu -10 299 134 2158 120 3 3 chr15 61426302 61426603 -39953918 - AluSx SINE Alu -11 301 1 1173 141 0 22 chr15 61426603 61426618 -39953903 - AluSc SINE Alu -175 134 120 1596 231 143 25 chr15 61426620 61426661 -39953860 - L1ME4a LINE L1 -246 5924 5889 2423 99 0 6 chr15 61426661 61426973 -39953548 - AluSx SINE Alu -2 310 1 1596 231 143 25 chr15 61426973 61427456 -39953065 - L1ME4a LINE L1 -281 5889 5338 377 161 126 46 chr15 61427459 61427546 -39952975 - AluSc SINE Alu -1 298 205 2348 91 0 3 chr15 61428286 61428595 -39951926 - AluY SINE Alu -3 308 1 967 157 0 164 chr15 61428680 61428954 -39951567 + AluJo SINE Alu 1 229 -83 2419 90 0 7 chr15 61429334 61429644 -39950877 - AluSx SINE Alu -2 310 3 1871 104 50 29 chr15 61429896 61430195 -39950326 - AluSx SINE Alu 0 305 1 857 211 6 0 chr15 61430223 61430398 -39950123 + AluJb SINE Alu 137 312 0 775 192 0 0 chr15 61430553 61430678 -39949843 + FLAM_C SINE Alu 1 125 -18 1178 160 0 6 chr15 61430685 61430866 -39949655 - AluJo SINE Alu -132 180 1 231 192 0 90 chr15 61430964 61431042 -39949479 - MARNA DNA Mariner -496 90 20 230 0 33 0 chr15 61431342 61431372 -39949149 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 1810 131 0 45 chr15 61431376 61431528 -39948993 - AluSx SINE Alu -35 277 143 2276 100 0 7 chr15 61431528 61431827 -39948694 - AluY SINE Alu -14 297 1 1810 131 0 45 chr15 61431827 61431964 -39948557 - AluSx SINE Alu -169 143 1 1088 195 75 0 chr15 61432017 61432284 -39948237 + L1MD3 LINE L1 6953 7239 -756 * 1250 164 52 37 chr15 61432282 61432578 -39947943 + L1MD3 LINE L1 6157 6303 -41 2305 78 10 0 chr15 61432618 61432912 -39947609 - AluSp SINE Alu -16 297 1 2269 113 0 7 chr15 61432916 61433218 -39947303 - AluSq SINE Alu -13 300 1 29 0 0 0 chr15 61433228 61433257 -39947264 + AT_rich Low_complexity Low_complexity 1 29 0 2122 95 0 11 chr15 61433266 61433550 -39946971 - AluY SINE Alu -26 285 5 2129 91 0 24 chr15 61433553 61433850 -39946671 - AluSc SINE Alu -18 291 2 2266 96 7 0 chr15 61434302 61434595 -39945926 + AluSp SINE Alu 1 295 -18 2092 115 47 0 chr15 61434707 61435003 -39945518 - AluSx SINE Alu -2 310 1 1396 172 116 0 chr15 61435111 61435378 -39945143 - AluJb SINE Alu -14 298 1 2503 84 0 0 chr15 61435536 61435846 -39944675 - AluY SINE Alu -1 310 1 391 273 124 12 chr15 61435852 61436013 -39944508 + MIR SINE MIR 70 248 -14 1525 210 14 4 chr15 61436110 61436391 -39944130 + AluJo SINE Alu 6 289 -23 204 269 39 0 chr15 61436516 61436568 -39943953 - MIR SINE MIR -12 250 197 2301 79 3 3 chr15 61437778 61438069 -39942452 + AluY SINE Alu 1 291 -20 1711 187 7 0 chr15 61438209 61438503 -39942018 + AluJb SINE Alu 3 298 -14 505 81 0 0 chr15 61438567 61438629 -39941892 - Alu SINE Alu -248 63 2 2400 71 7 7 chr15 61438642 61438950 -39941571 - AluY SINE Alu -3 308 1 326 291 78 0 chr15 61439072 61439175 -39941346 + MIR3 SINE MIR 75 185 -23 1906 114 77 0 chr15 61439323 61439595 -39940926 + AluSg1 SINE Alu 1 293 -16 2316 103 3 0 chr15 61440417 61440717 -39939804 - AluSq SINE Alu -11 302 2 180 179 0 0 chr15 61440809 61440848 -39939673 + (TATG)n Simple_repeat Simple_repeat 4 42 0 414 269 52 43 chr15 61441131 61441499 -39939022 + L1ME LINE L1 5192 5562 -559 2372 139 6 8 chr15 61441522 61441881 -39938640 + L1MC1 LINE L1 5968 6325 -8 952 113 8 0 chr15 61441882 61442006 -39938515 + FLAM_C SINE Alu 1 125 -8 2455 61 0 7 chr15 61442078 61442372 -39938149 - AluY SINE Alu -18 293 2 1531 170 83 7 chr15 61443593 61443870 -39936651 - AluJo SINE Alu -14 298 1 2085 90 18 7 chr15 61443966 61444279 -39936242 - AluSc SINE Alu 0 316 1 2140 94 0 4 chr15 61444900 61445177 -39935344 - AluY SINE Alu -2 309 34 1828 134 0 4 chr15 61445238 61445500 -39935021 + AluJo SINE Alu 34 294 -18 303 277 24 0 chr15 61445634 61445717 -39934804 - L2 LINE L2 -298 2974 2890 1763 208 80 25 chr15 61445745 61446183 -39934338 - MLT1C LTR MaLR 0 467 6 241 355 104 56 chr15 61446197 61446448 -39934073 - L2 LINE L2 -496 2818 2556 1002 166 0 43 chr15 61446471 61446634 -39933887 + FRAM SINE Alu 1 156 -10 818 163 0 0 chr15 61446835 61446958 -39933563 + FLAM_C SINE Alu 2 124 -9 253 353 84 0 chr15 61447091 61447210 -39933311 + L2 LINE L2 3136 3264 -8 305 320 10 10 chr15 61447250 61447353 -39933168 - MIR3 SINE MIR -7 201 99 1679 196 0 13 chr15 61447404 61447705 -39932816 - AluJb SINE Alu -15 297 1 668 192 8 40 chr15 61447715 61447840 -39932681 - FLAM_A SINE Alu -12 121 1 27 0 0 0 chr15 61447840 61447867 -39932654 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr15 61447898 61447920 -39932601 + AT_rich Low_complexity Low_complexity 1 22 0 2090 111 18 0 chr15 61448502 61448805 -39931716 - AluSq SINE Alu 0 308 1 2440 75 3 0 chr15 61449741 61450049 -39930472 - AluY SINE Alu 0 311 3 270 186 153 59 chr15 61450114 61450207 -39930314 - L1ME4a LINE L1 -37 6084 6001 2258 113 0 0 chr15 61450207 61450507 -39930014 - AluSg SINE Alu -10 300 1 2307 101 3 0 chr15 61450507 61450814 -39929707 - AluSp SINE Alu -4 309 1 270 186 153 59 chr15 61450814 61450837 -39929684 - L1ME4a LINE L1 -119 6002 5956 2181 103 0 31 chr15 61450907 61451226 -39929295 - AluY SINE Alu -2 309 1 484 171 0 105 chr15 61451348 61451422 -39929099 + MER7A DNA MER2_type 5 64 -2974 1991 98 98 0 chr15 61451422 61451688 -39928833 + AluSg SINE Alu 1 292 -18 484 171 0 105 chr15 61451688 61451718 -39928803 + MER7A DNA MER2_type 64 96 -250 1614 136 4 0 chr15 61451846 61452074 -39928447 - AluSx SINE Alu -83 229 1 1382 138 73 54 chr15 61452074 61452201 -39928320 + MER7A DNA MER2_type 72 195 -2833 1951 121 57 4 chr15 61452201 61452481 -39928040 + AluSx SINE Alu 2 296 -16 1382 138 73 54 chr15 61452481 61452613 -39927908 + MER7A DNA MER2_type 195 336 0 356 319 116 7 chr15 61452616 61452764 -39927757 - MIR3 SINE MIR -67 141 7 2494 66 13 0 chr15 61453625 61453926 -39926595 + AluSc SINE Alu 1 305 -4 29 28 0 0 chr15 61453966 61454002 -39926519 + AT_rich Low_complexity Low_complexity 1 36 0 2203 116 3 3 chr15 61455212 61455515 -39925006 - AluSx SINE Alu -9 303 1 630 154 111 17 chr15 61456085 61456202 -39924319 - FLAM_C SINE Alu -5 128 1 2094 122 0 3 chr15 61456239 61456535 -39923986 + AluY SINE Alu 1 295 -16 255 175 0 0 chr15 61456767 61456824 -39923697 + (TATG)n Simple_repeat Simple_repeat 2 58 0 2409 103 0 0 chr15 61456856 61457158 -39923363 + AluSx SINE Alu 1 302 -10 2078 122 7 7 chr15 61457161 61457457 -39923064 + AluY SINE Alu 5 300 -11 1844 154 27 3 chr15 61457822 61458114 -39922407 - AluSx SINE Alu -13 299 1 2200 122 0 10 chr15 61459046 61459350 -39921171 - AluSx SINE Alu -11 301 1 2426 95 0 6 chr15 61459471 61459786 -39920735 + AluSq SINE Alu 1 313 0 560 203 101 22 chr15 61459914 61460052 -39920469 + MER103 DNA DNA 15 163 -3 2309 97 0 31 chr15 61461860 61462181 -39918340 + AluSx SINE Alu 1 311 -1 1147 128 12 0 chr15 61462183 61462347 -39918174 + AluSg/x SINE Alu 126 291 -19 180 0 0 0 chr15 61462542 61462562 -39917959 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 1614 181 14 4 chr15 61462562 61462843 -39917678 - AluJb SINE Alu -28 284 1 2261 112 3 0 chr15 61462889 61463185 -39917336 - AluSp SINE Alu -16 297 1 1726 181 14 0 chr15 61463452 61463740 -39916781 + AluJo SINE Alu 3 294 -18 189 0 0 0 chr15 61464205 61464226 -39916295 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1619 95 102 91 chr15 61464229 61464514 -39916007 - AluSx SINE Alu -24 288 1 2625 47 0 0 chr15 61464838 61465137 -39915384 + AluY SINE Alu 1 299 -12 762 100 125 8 chr15 61465149 61465269 -39915252 + AluJo SINE Alu 2 135 -177 1960 146 7 17 chr15 61465269 61465571 -39914950 + AluJo SINE Alu 1 299 -13 2122 103 7 39 chr15 61466140 61466450 -39914071 - AluSx SINE Alu -12 300 1 181 167 119 0 chr15 61466695 61466737 -39913784 - L3b LINE CR1 -246 1337 1291 2339 109 0 0 chr15 61466970 61467282 -39913239 - AluSx SINE Alu 0 312 1 2259 72 0 42 chr15 61467436 61467610 -39912911 - AluSc SINE Alu -14 295 138 2160 84 3 56 chr15 61467610 61467933 -39912588 - AluSc SINE Alu -3 306 1 2259 72 0 42 chr15 61467933 61468065 -39912456 - AluSc SINE Alu -171 138 2 270 125 0 0 chr15 61468179 61468219 -39912302 - MER4D LTR ERV1 -73 830 791 220 179 18 36 chr15 61468968 61469024 -39911497 + C-rich Low_complexity Low_complexity 5 59 0 294 314 25 0 chr15 61470250 61470371 -39910150 + MIR SINE MIR 47 170 -92 2159 111 0 4 chr15 61470783 61471093 -39909428 - AluSg SINE Alu 0 309 1 740 223 6 24 chr15 61471266 61471432 -39909089 - FRAM SINE Alu -13 163 1 2339 110 0 7 chr15 61471442 61471752 -39908769 - AluSg SINE Alu -2 308 1 2005 166 0 0 chr15 61472008 61472310 -39908211 - AluSx SINE Alu -10 302 1 2334 92 16 0 chr15 61472372 61472675 -39907846 + AluSp SINE Alu 1 308 -5 1967 140 10 3 chr15 61472783 61473091 -39907430 - AluSx SINE Alu -2 310 1 1813 144 35 0 chr15 61473235 61473519 -39907002 - AluSx SINE Alu -18 294 1 2454 60 0 26 chr15 61474602 61474904 -39905617 - AluY SINE Alu -17 294 1 833 134 0 35 chr15 61475175 61475317 -39905204 - FLAM_A SINE Alu 0 142 6 2256 92 3 16 chr15 61475960 61476263 -39904258 - AluSq SINE Alu -12 301 3 2400 79 7 7 chr15 61476312 61476616 -39903905 + AluY SINE Alu 1 304 -7 1911 121 0 25 chr15 61476617 61476899 -39903622 + AluSx SINE Alu 29 303 -9 2200 123 10 0 chr15 61477550 61477859 -39902662 - AluSx SINE Alu 0 312 1 2816 22 0 13 chr15 61477859 61478177 -39902344 - AluYb8 SINE Alu -4 314 1 567 141 0 11 chr15 61478182 61478274 -39902247 - FLAM_A SINE Alu -19 123 33 1607 171 46 30 chr15 61479431 61479566 -39900955 + AluJo SINE Alu 1 132 -180 1920 124 17 3 chr15 61479566 61479857 -39900664 + AluSx SINE Alu 1 295 -17 1607 171 46 30 chr15 61479857 61480026 -39900495 + AluJo SINE Alu 132 310 -2 2206 113 3 10 chr15 61480101 61480411 -39900110 + AluSq SINE Alu 5 312 -1 2238 107 0 7 chr15 61480432 61480723 -39899798 - AluSc SINE Alu -20 289 1 1939 90 112 14 chr15 61480935 61481213 -39899308 + AluSq SINE Alu 1 305 -8 1821 181 3 10 chr15 61481955 61482264 -39898257 + AluJo SINE Alu 1 307 -5 1175 127 30 0 chr15 61482436 61482601 -39897920 - AluSg/x SINE Alu -17 293 124 1452 143 57 49 chr15 61482954 61483219 -39897302 - AluJo SINE Alu -16 296 30 2163 117 3 3 chr15 61483244 61483542 -39896979 - AluSq SINE Alu -13 300 3 225 0 0 0 chr15 61483708 61483733 -39896788 + (T)n Simple_repeat Simple_repeat 1 25 0 2555 69 0 0 chr15 61483840 61484144 -39896377 - AluY SINE Alu -7 304 1 2174 114 0 17 chr15 61484144 61484442 -39896079 - AluSx SINE Alu -18 294 1 2083 113 25 0 chr15 61484490 61484773 -39895748 - AluSx SINE Alu -22 290 1 2367 64 0 0 chr15 61485209 61485516 -39895005 + AluY SINE Alu 1 307 0 2053 119 24 0 chr15 61485568 61485862 -39894659 + AluSg SINE Alu 1 301 -9 2286 79 10 3 chr15 61487136 61487428 -39893093 + AluY SINE Alu 1 294 -17 1653 208 0 6 chr15 61487439 61487752 -39892769 + AluSx SINE Alu 1 311 -1 2201 110 7 7 chr15 61487989 61488298 -39892223 - AluSc SINE Alu 0 309 1 1628 149 75 4 chr15 61488300 61488568 -39891953 - AluSx SINE Alu -25 287 1 2323 116 0 0 chr15 61488820 61489122 -39891399 + AluSg SINE Alu 1 302 -8 21 36 0 0 chr15 61489238 61489266 -39891255 + AT_rich Low_complexity Low_complexity 1 28 0 402 123 0 0 chr15 61489266 61489323 -39891198 - Alu SINE Alu -10 292 236 451 106 15 0 chr15 61489327 61489393 -39891128 - L1PA8A LINE L1 -28 6103 6037 1316 134 5 0 chr15 61489393 61489579 -39890942 - AluSx SINE Alu -110 202 16 2250 83 3 20 chr15 61490062 61490364 -39890157 + AluSg SINE Alu 2 298 -12 450 0 0 0 chr15 61490364 61490414 -39890107 + (TA)n Simple_repeat Simple_repeat 2 51 0 1351 76 23 0 chr15 61490624 61490795 -39889726 - AluSg/x SINE Alu -4 306 132 2345 78 13 19 chr15 61490795 61491102 -39889419 - AluY SINE Alu -6 305 1 401 210 12 0 chr15 61491330 61491411 -39889110 - FLAM_C SINE Alu -25 118 37 2283 105 0 0 chr15 61491507 61491802 -39888719 + AluSg SINE Alu 1 295 -15 248 276 124 0 chr15 61491815 61491920 -39888601 + MIR SINE MIR 51 168 -94 188 258 196 21 chr15 61491969 61492066 -39888455 - L2 LINE L2 0 3313 3200 2159 127 3 16 chr15 61492071 61492387 -39888134 + AluJb SINE Alu 1 312 0 180 0 0 0 chr15 61492772 61492792 -39887729 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2139 138 0 6 chr15 61492977 61493288 -39887233 + AluSg SINE Alu 1 309 -1 1578 178 64 4 chr15 61493315 61493596 -39886925 + AluJb SINE Alu 1 298 -14 1848 122 6 81 chr15 61494984 61495406 -39885115 + AluJb SINE Alu 2 398 0 2077 101 3 57 chr15 61495567 61495885 -39884636 + AluSx SINE Alu 1 301 -11 2301 122 0 0 chr15 61496230 61496541 -39883980 - AluSx SINE Alu -1 311 1 2159 128 3 7 chr15 61497002 61497308 -39883213 - AluSx SINE Alu -7 305 1 1929 118 11 0 chr15 61497336 61497606 -39882915 + AluSx SINE Alu 1 273 -39 320 124 21 0 chr15 61497728 61497787 -39882734 - Alu SINE Alu -256 46 2 225 283 26 88 chr15 61497897 61497920 -39882601 - L2 LINE L2 0 3313 3290 1969 146 14 0 chr15 61497920 61498215 -39882306 + AluSx SINE Alu 1 299 -13 2182 102 0 3 chr15 61498218 61498538 -39881983 + AluSg SINE Alu 1 319 0 225 283 26 88 chr15 61498538 61498622 -39881899 - L2 LINE L2 -25 3288 3208 1635 124 0 13 chr15 61498975 61499209 -39881312 + AluSg/x SINE Alu 69 299 -13 1380 102 84 14 chr15 61499395 61499610 -39880911 - MER30 DNA MER1_type 0 230 1 225 167 24 0 chr15 61499647 61499689 -39880832 + MER57A LTR ERV1 295 337 -66 2410 98 3 0 chr15 61499706 61500013 -39880508 + AluSp SINE Alu 1 308 -5 2045 141 7 0 chr15 61500522 61500826 -39879695 + AluJb SINE Alu 1 306 -6 2256 93 0 20 chr15 61500829 61501131 -39879390 + AluSg SINE Alu 2 297 -13 312 296 0 0 chr15 61501159 61501230 -39879291 - L2 LINE L2 -2 3270 3200 189 0 0 0 chr15 61501411 61501432 -39879089 + (A)n Simple_repeat Simple_repeat 1 21 0 252 135 0 0 chr15 61501443 61501480 -39879041 - ERVL LTR ERVL -1243 4521 4485 2264 118 0 0 chr15 61501601 61501898 -39878623 + AluSx SINE Alu 1 297 -15 2201 100 10 0 chr15 61501900 61502190 -39878331 + AluSg SINE Alu 1 293 -17 23 0 0 0 chr15 61502297 61502320 -39878201 + AT_rich Low_complexity Low_complexity 1 23 0 518 107 0 7 chr15 61502352 61502595 -39877926 - AluSc SINE Alu -1 308 1 287 250 40 13 chr15 61502600 61502676 -39877845 + L2 LINE L2 3177 3254 -18 1759 113 29 48 chr15 61502727 61503037 -39877484 + AluSg SINE Alu 1 304 -6 2032 121 7 7 chr15 61503235 61503533 -39876988 - AluSx SINE Alu -14 298 1 383 327 44 9 chr15 61503537 61503763 -39876758 - L2 LINE L2 -604 2710 2477 183 80 0 0 chr15 61504055 61504080 -39876441 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 1969 91 4 0 chr15 61504082 61504323 -39876198 - AluSp SINE Alu -36 277 36 2408 100 3 3 chr15 61505252 61505563 -39874958 - AluSq SINE Alu -2 311 1 22 35 0 0 chr15 61505788 61505817 -39874704 + AT_rich Low_complexity Low_complexity 1 29 0 633 179 152 7 chr15 61505820 61505971 -39874550 + AluJo SINE Alu 114 286 -26 34 0 0 0 chr15 61505971 61506005 -39874516 + AT_rich Low_complexity Low_complexity 1 34 0 2324 69 3 13 chr15 61506730 61507034 -39873487 - AluY SINE Alu -10 301 1 1501 233 72 47 chr15 61507047 61507230 -39873291 - L2 LINE L2 -5 3308 3131 2372 67 7 0 chr15 61507230 61507515 -39873006 + AluY SINE Alu 1 287 -24 1501 233 72 47 chr15 61507515 61508113 -39872408 - L2 LINE L2 -182 3131 2529 295 122 0 0 chr15 61508115 61508156 -39872365 - AluJo SINE Alu -12 290 250 1068 133 0 48 chr15 61508156 61508321 -39872200 - AluJo SINE Alu -155 157 1 1315 241 26 34 chr15 61508410 61508442 -39872079 - L2 LINE L2 -1347 1967 1936 2334 93 3 13 chr15 61508442 61508743 -39871778 + AluSx SINE Alu 1 298 -14 1315 241 26 34 chr15 61508743 61509088 -39871433 - L2 LINE L2 -1378 1936 1593 882 153 0 0 chr15 61509476 61509607 -39870914 + FLAM_C SINE Alu 1 131 -2 180 0 0 0 chr15 61510483 61510503 -39870018 + (T)n Simple_repeat Simple_repeat 1 20 0 812 98 0 9 chr15 61510865 61510977 -39869544 - HY1 scRNA scRNA -1 111 1 240 35 0 0 chr15 61511004 61511033 -39869488 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2141 75 0 127 chr15 61511078 61511425 -39869096 + AluSc SINE Alu 1 303 -6 2241 89 0 7 chr15 61511724 61512048 -39868473 + AluY SINE Alu 1 322 0 487 291 3 7 chr15 61512606 61512755 -39867766 + MIR3 SINE MIR 56 205 -3 2111 101 32 0 chr15 61513681 61513959 -39866562 - AluSc SINE Alu -21 288 2 569 200 95 0 chr15 61513991 61514096 -39866425 + FLAM_C SINE Alu 3 117 -26 36 0 0 0 chr15 61514097 61514133 -39866388 + AT_rich Low_complexity Low_complexity 1 36 0 2503 188 50 84 chr15 61514133 61514302 -39866219 + L1MC2 LINE L1 4921 5094 -1250 2145 123 0 0 chr15 61514302 61514637 -39865884 - AluSq SINE Alu 0 335 1 2503 188 50 84 chr15 61514637 61515350 -39865171 + L1MC2 LINE L1 5094 5830 -514 854 145 8 0 chr15 61515350 61515481 -39865040 + FLAM_A SINE Alu 2 133 0 2503 188 50 84 chr15 61515481 61515605 -39864916 + L1MC2 LINE L1 5830 5957 -387 2200 102 3 3 chr15 61515605 61515898 -39864623 + AluSc SINE Alu 1 293 -16 2503 188 50 84 chr15 61515898 61516361 -39864160 + L1MC2 LINE L1 5957 6320 -24 2307 89 0 16 chr15 61516731 61517034 -39863487 + AluSx SINE Alu 1 298 -14 2025 112 0 17 chr15 61517047 61517343 -39863178 + AluSx SINE Alu 1 291 -21 2342 87 10 0 chr15 61517348 61517646 -39862875 + AluSq SINE Alu 2 302 -11 2515 66 3 3 chr15 61518404 61518709 -39861812 - AluSp SINE Alu -1 312 8 2218 119 7 0 chr15 61518875 61519177 -39861344 - AluSg SINE Alu -6 304 1 634 187 187 16 chr15 61519999 61520181 -39860340 + MER46C DNA MER2_type 2 214 -124 2215 123 7 0 chr15 61520181 61520490 -39860031 - AluSp SINE Alu -2 311 1 1782 166 7 3 chr15 61520492 61520781 -39859740 - AluJo SINE Alu -21 291 2 439 227 0 23 chr15 61520846 61520934 -39859587 - FRAM/FAM SINE Alu -92 84 1 259 270 70 30 chr15 61520942 61521042 -39859479 - MIR SINE MIR -67 141 38 2531 70 0 0 chr15 61521492 61521791 -39858730 + AluSg SINE Alu 1 299 -11 2376 63 11 3 chr15 61521791 61522076 -39858445 + AluSc SINE Alu 1 288 -21 1654 161 39 73 chr15 61522546 61522616 -39857905 - L1MD2 LINE L1 -1 6358 6287 1491 188 35 14 chr15 61522616 61522898 -39857623 + AluJb SINE Alu 1 288 -24 1654 161 39 73 chr15 61522898 61523211 -39857310 - L1MD2 LINE L1 -72 6287 5988 2329 110 0 0 chr15 61523337 61523638 -39856883 + AluSx SINE Alu 1 301 -11 1552 174 62 4 chr15 61523719 61523995 -39856526 - AluSx SINE Alu -20 292 1 584 244 105 23 chr15 61524054 61524320 -39856201 - HAL1 LINE L1 -309 2198 1911 766 188 36 85 chr15 61524473 61524697 -39855824 - L1ME3 LINE L1 0 6162 5950 2393 87 0 16 chr15 61524719 61525029 -39855492 - AluSg SINE Alu -5 305 1 249 296 0 61 chr15 61525484 61525582 -39854939 - L2 LINE L2 -48 3224 3133 1466 167 32 39 chr15 61525909 61526006 -39854515 + AluJo SINE Alu 24 120 -192 294 29 0 0 chr15 61526006 61526041 -39854480 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1466 167 32 39 chr15 61526041 61526224 -39854297 + AluJo SINE Alu 120 302 -10 2299 102 13 0 chr15 61526269 61526574 -39853947 - AluSg SINE Alu 0 310 2 2404 87 7 0 chr15 61526624 61526923 -39853598 - AluSx SINE Alu -11 301 1 1818 164 3 23 chr15 61527055 61527360 -39853161 - AluJb SINE Alu -13 299 1 2464 86 0 0 chr15 61527368 61527669 -39852852 - AluSp SINE Alu -12 301 1 2140 122 7 0 chr15 61528663 61528958 -39851563 + AluSg SINE Alu 2 298 -12 2294 112 0 3 chr15 61529055 61529360 -39851161 + AluSx SINE Alu 1 304 -8 24 32 0 0 chr15 61529475 61529506 -39851015 + AT_rich Low_complexity Low_complexity 1 31 0 846 118 0 52 chr15 61529640 61529776 -39850745 - FLAM_C SINE Alu -3 130 2 191 342 13 13 chr15 61529888 61529964 -39850557 - MIR3 SINE MIR -130 78 3 726 327 67 40 chr15 61531339 61531630 -39848891 - L3 LINE CR1 -9 1568 1257 1880 125 59 3 chr15 61531630 61531919 -39848602 - AluSx SINE Alu -6 306 2 726 327 67 40 chr15 61531919 61532122 -39848399 - L3 LINE CR1 -320 1257 1061 1564 145 3 74 chr15 61532501 61532784 -39847737 - AluSx SINE Alu -24 288 26 2137 133 7 0 chr15 61532918 61533212 -39847309 - AluSx SINE Alu -16 296 1 322 307 0 0 chr15 61533703 61533791 -39846730 + L2 LINE L2 3185 3272 0 2142 135 3 6 chr15 61533899 61534210 -39846311 - AluJb SINE Alu -2 310 1 2037 133 7 3 chr15 61534715 61535008 -39845513 + AluSx SINE Alu 1 294 -18 2157 124 0 0 chr15 61535163 61535445 -39845076 - AluSx SINE Alu -30 282 1 24 0 0 0 chr15 61539390 61539414 -39841107 + AT_rich Low_complexity Low_complexity 1 24 0 1861 159 30 3 chr15 61539880 61540181 -39840340 + AluJb SINE Alu 1 309 -3 405 255 39 0 chr15 61541360 61541462 -39839059 - MIR3 SINE MIR -41 167 62 1933 138 7 37 chr15 61541580 61541876 -39838645 - AluSx SINE Alu -25 287 1 409 179 48 0 chr15 61541878 61541962 -39838559 - AluJo/FLAM SINE Alu -182 130 43 393 211 22 0 chr15 61541969 61542061 -39838460 - FRAM/FAM SINE Alu -109 57 1 362 325 17 8 chr15 61542551 61542671 -39837850 - L2 LINE L2 -1 3271 3151 494 289 69 12 chr15 61542681 61542854 -39837667 + MER5A DNA MER1_type 1 183 -6 647 139 0 28 chr15 61542982 61543090 -39837431 + AluJb SINE Alu 198 302 -10 551 245 61 0 chr15 61543097 61543244 -39837277 + MIR SINE MIR 20 175 -87 1697 128 101 0 chr15 61543245 61543503 -39837018 - AluSx SINE Alu -13 299 16 2402 71 0 0 chr15 61543662 61543984 -39836537 + AluY SINE Alu 1 322 0 248 301 8 5 chr15 61544210 61544335 -39836186 - MER5A DNA MER1_type -1 188 1 1627 181 50 3 chr15 61544556 61544838 -39835683 - AluJb SINE Alu -17 295 1 1587 175 0 4 chr15 61545312 61545564 -39834957 - AluJb SINE Alu -21 291 41 1989 152 0 7 chr15 61545767 61546064 -39834457 + AluJo SINE Alu 1 295 -17 191 59 0 29 chr15 61546107 61546141 -39834380 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 627 137 10 10 chr15 61546213 61546315 -39834206 - FLAM_A SINE Alu -17 125 24 25 0 0 0 chr15 61546411 61546436 -39834085 + AT_rich Low_complexity Low_complexity 1 25 0 2550 55 13 0 chr15 61546951 61547258 -39833263 + AluY SINE Alu 1 311 0 2205 111 10 0 chr15 61547960 61548249 -39832272 - AluSx SINE Alu -20 292 1 1199 143 6 0 chr15 61548305 61548487 -39832034 - AluSg/x SINE Alu -6 304 122 2196 102 23 7 chr15 61548489 61548792 -39831729 - AluSq SINE Alu -5 308 1 1669 137 3 73 chr15 61548808 61549121 -39831400 - AluJb SINE Alu -21 291 1 1322 130 14 28 chr15 61549123 61549339 -39831182 + MER46A DNA MER2_type 24 236 0 359 338 56 19 chr15 61549595 61549738 -39830783 - MIR3 SINE MIR -17 191 40 1884 131 24 17 chr15 61549738 61550028 -39830493 + AluSx SINE Alu 1 292 -20 359 338 56 19 chr15 61550028 61550044 -39830477 - MIR3 SINE MIR -168 40 26 240 276 13 26 chr15 61550247 61550323 -39830198 - L2 LINE L2 -1 3271 3197 514 267 9 39 chr15 61550698 61550862 -39829659 - MIR3 SINE MIR -71 137 8 216 67 0 0 chr15 61550955 61550985 -39829536 + (T)n Simple_repeat Simple_repeat 1 30 0 261 0 0 0 chr15 61554084 61554113 -39826408 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 308 56 0 0 chr15 61554208 61554244 -39826277 + U2 snRNA snRNA 1 36 -152 1046 185 50 10 chr15 61555103 61555303 -39825218 - MER3 DNA MER1_type 0 209 2 1477 184 89 9 chr15 61555312 61555475 -39825046 - MER58B DNA MER1_type -2079 341 192 2102 97 38 0 chr15 61555475 61555765 -39824756 - AluSp SINE Alu -12 301 1 1477 184 89 9 chr15 61555765 61555917 -39824604 - MER58B DNA MER1_type -2228 192 1 213 39 0 0 chr15 61557429 61557455 -39823066 + (CGG)n Simple_repeat Simple_repeat 3 28 0 237 214 0 68 chr15 61557492 61557595 -39822926 + G-rich Low_complexity Low_complexity 4 99 0 215 276 5 83 chr15 61557694 61557886 -39822635 + G-rich Low_complexity Low_complexity 3 179 0 758 181 0 15 chr15 61559321 61559454 -39821067 + FLAM_C SINE Alu 3 133 0 873 138 8 0 chr15 61559805 61559928 -39820593 + FLAM_C SINE Alu 1 124 -19 1862 174 0 13 chr15 61559945 61560250 -39820271 + AluJb SINE Alu 1 301 -11 21 57 0 0 chr15 61562134 61562169 -39818352 + AT_rich Low_complexity Low_complexity 1 35 0 214 39 0 0 chr15 61562196 61562222 -39818299 + (TTTG)n Simple_repeat Simple_repeat 2 144 0 2089 120 3 0 chr15 61562222 61562513 -39818008 - AluSq SINE Alu -1 317 1 2475 88 0 0 chr15 61562666 61562972 -39817549 + AluSq SINE Alu 1 306 -7 2182 116 7 0 chr15 61564397 61564691 -39815830 + AluSc SINE Alu 1 296 -13 1089 151 6 34 chr15 61564842 61565021 -39815500 - AluJ SINE Alu -10 302 129 396 96 39 48 chr15 61565023 61565127 -39815394 + CT-rich Low_complexity Low_complexity 2 104 0 221 59 0 29 chr15 61565130 61565164 -39815357 + (TTCTCC)n Simple_repeat Simple_repeat 4 36 0 533 155 0 0 chr15 61565165 61565236 -39815285 - AluJo SINE Alu -28 284 214 227 148 131 66 chr15 61565237 61565298 -39815223 - AluJo SINE Alu -151 151 87 1026 181 0 117 chr15 61565299 61565548 -39814973 - AluJo SINE Alu -92 220 1 526 320 35 0 chr15 61565586 61565758 -39814763 + MIR3 SINE MIR 30 207 -1 1449 142 25 95 chr15 61565766 61565899 -39814622 + AluJb SINE Alu 14 155 -157 1484 123 5 0 chr15 61565899 61566102 -39814419 + AluSq SINE Alu 86 289 -24 1449 142 25 95 chr15 61566102 61566285 -39814236 + AluJb SINE Alu 155 308 -4 606 72 12 12 chr15 61566580 61566663 -39813858 + AluS SINE Alu 2 84 -228 1185 179 61 14 chr15 61566968 61567180 -39813341 - AluJb SINE Alu -90 222 1 2314 92 7 0 chr15 61567358 61567652 -39812869 - AluSg SINE Alu -14 296 1 1924 149 10 7 chr15 61567914 61568209 -39812312 + AluSx SINE Alu 3 298 -14 2108 101 7 26 chr15 61568407 61568715 -39811806 - AluSp SINE Alu -11 302 1 2211 112 0 6 chr15 61568733 61569045 -39811476 - AluSx SINE Alu -2 310 1 1618 161 71 0 chr15 61569418 61569698 -39810823 + AluJb SINE Alu 4 303 -9 2489 84 0 0 chr15 61570021 61570329 -39810192 - AluSg SINE Alu -2 308 1 2316 93 0 10 chr15 61570441 61570605 -39809916 - AluSx SINE Alu -15 297 136 2099 107 3 20 chr15 61570605 61570905 -39809616 - AluSg SINE Alu -15 295 1 2316 93 0 10 chr15 61570905 61571040 -39809481 - AluSx SINE Alu -176 136 1 2367 64 3 0 chr15 61571049 61571332 -39809189 - AluSp SINE Alu -16 297 14 194 349 39 6 chr15 61571455 61571579 -39808942 - L2 LINE L2 0 3313 3107 199 340 19 19 chr15 61571624 61571727 -39808794 + L2 LINE L2 2684 2786 -528 736 206 8 0 chr15 61571792 61571923 -39808598 - FLAM_A SINE Alu 0 133 2 207 0 0 0 chr15 61571930 61571953 -39808568 + (T)n Simple_repeat Simple_repeat 1 23 0 2280 70 20 17 chr15 61572225 61572523 -39807998 - AluSg SINE Alu -11 299 1 376 253 121 110 chr15 61573057 61573330 -39807191 - L2 LINE L2 -5 3308 3033 2499 75 0 0 chr15 61573965 61574272 -39806249 - AluY SINE Alu -4 307 1 2177 126 3 3 chr15 61574451 61574761 -39805760 - AluSx SINE Alu -2 310 1 381 22 0 0 chr15 61574987 61575033 -39805488 + (TG)n Simple_repeat Simple_repeat 2 47 0 943 208 0 6 chr15 61575036 61575195 -39805326 - FAM SINE Alu -16 159 2 1991 105 3 34 chr15 61575210 61575504 -39805017 - AluSx SINE Alu -19 293 9 2547 75 0 0 chr15 61576118 61576424 -39804097 - AluY SINE Alu -5 306 1 2289 99 0 16 chr15 61576470 61576773 -39803748 + AluSx SINE Alu 1 298 -14 2083 109 0 10 chr15 61576786 61577080 -39803441 + AluSx SINE Alu 1 291 -21 2324 87 10 0 chr15 61577085 61577383 -39803138 + AluSq SINE Alu 2 302 -11 2538 66 3 0 chr15 61578141 61578446 -39802075 - AluSp SINE Alu 0 313 8 2201 119 7 0 chr15 61578612 61578914 -39801607 - AluSg SINE Alu -6 304 1 650 187 187 16 chr15 61579736 61579918 -39800603 + MER46C DNA MER2_type 2 214 -124 2214 120 7 0 chr15 61579918 61580227 -39800294 - AluSp SINE Alu -2 311 1 1740 170 7 3 chr15 61580229 61580518 -39800003 - AluJo SINE Alu -21 291 2 473 227 0 23 chr15 61580583 61580671 -39799850 - FRAM/FAM SINE Alu -92 84 1 293 260 70 30 chr15 61580679 61580779 -39799742 - MIR SINE MIR -67 141 38 2489 77 0 0 chr15 61581228 61581528 -39798993 + AluSg SINE Alu 1 300 -10 2368 63 7 3 chr15 61581528 61581814 -39798707 + AluSc SINE Alu 1 288 -21 1666 161 39 73 chr15 61582284 61582354 -39798167 - L1MD2 LINE L1 -1 6358 6287 1479 188 35 14 chr15 61582354 61582636 -39797885 + AluJb SINE Alu 1 288 -24 1666 161 39 73 chr15 61582636 61582949 -39797572 - L1MD2 LINE L1 -72 6287 5988 2299 110 0 0 chr15 61583075 61583375 -39797146 + AluSx SINE Alu 1 300 -12 1524 178 62 4 chr15 61583456 61583732 -39796789 - AluSx SINE Alu -20 292 1 609 244 105 23 chr15 61583791 61584057 -39796464 - HAL1 LINE L1 -309 2198 1911 774 188 36 85 chr15 61584210 61584434 -39796087 - L1ME3 LINE L1 0 6162 5950 2371 87 0 16 chr15 61584456 61584766 -39795755 - AluSg SINE Alu -5 305 1 278 296 0 61 chr15 61585221 61585319 -39795202 - L2 LINE L2 -48 3224 3133 1466 151 0 103 chr15 61585646 61585957 -39794564 + AluJo SINE Alu 24 302 -10 2280 102 13 0 chr15 61586002 61586307 -39794214 - AluSg SINE Alu 0 310 2 2361 88 7 0 chr15 61586357 61586654 -39793867 - AluSx SINE Alu -13 299 1 1802 164 3 23 chr15 61586787 61587092 -39793429 - AluJb SINE Alu -13 299 1 2476 83 0 0 chr15 61587097 61587399 -39793122 - AluSp SINE Alu -11 302 1 2115 122 7 0 chr15 61588393 61588688 -39791833 + AluSg SINE Alu 2 298 -12 2276 112 0 3 chr15 61588785 61589090 -39791431 + AluSx SINE Alu 1 304 -8 24 32 0 0 chr15 61589205 61589236 -39791285 + AT_rich Low_complexity Low_complexity 1 31 0 884 84 0 53 chr15 61589361 61589492 -39791029 - FLAM_C SINE Alu -4 139 16 218 325 12 36 chr15 61589610 61589693 -39790828 - MIR3 SINE MIR -125 83 3 862 327 67 40 chr15 61591068 61591359 -39789162 - L3 LINE CR1 -9 1568 1257 1869 125 59 3 chr15 61591359 61591648 -39788873 - AluSx SINE Alu -6 306 2 862 327 67 40 chr15 61591648 61591851 -39788670 - L3 LINE CR1 -320 1257 1061 1503 165 4 35 chr15 61592229 61592484 -39788037 - AluSx SINE Alu -24 288 42 2114 133 10 0 chr15 61592645 61592938 -39787583 - AluSx SINE Alu -16 296 1 351 307 0 0 chr15 61593429 61593517 -39787004 + L2 LINE L2 3185 3272 0 2125 135 3 6 chr15 61593625 61593936 -39786585 - AluJb SINE Alu -2 310 1 2018 130 7 3 chr15 61594441 61594733 -39785788 + AluSx SINE Alu 1 293 -19 2200 125 0 0 chr15 61595068 61595365 -39785156 + AluSx SINE Alu 1 297 -15 1886 149 17 17 chr15 61595367 61595663 -39784858 + AluSg SINE Alu 1 296 -14 344 191 73 0 chr15 61595674 61595742 -39784779 + MIR SINE MIR 182 254 -8 24 0 0 0 chr15 61596802 61596826 -39783695 + AT_rich Low_complexity Low_complexity 1 24 0 518 226 18 101 chr15 61597518 61597612 -39782909 + MER5A DNA MER1_type 35 111 -78 2094 145 0 19 chr15 61597612 61597923 -39782598 - AluJb SINE Alu -7 305 1 518 226 18 101 chr15 61597923 61597996 -39782525 + MER5A DNA MER1_type 111 188 -1 626 182 21 35 chr15 61598211 61598354 -39782167 + MIR SINE MIR 119 259 -3 641 158 0 42 chr15 61598858 61598978 -39781543 + Tigger7 DNA MER2_type 3 117 -616 1624 175 43 28 chr15 61598980 61599125 -39781396 + Tigger7 DNA MER2_type 2256 2397 -190 1803 166 3 13 chr15 61599125 61599432 -39781089 - AluJo SINE Alu -4 308 5 1624 175 43 28 chr15 61599432 61599612 -39780909 + Tigger7 DNA MER2_type 2397 2586 -1 201 27 0 81 chr15 61599861 61599898 -39780623 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 2293 93 0 29 chr15 61600119 61600429 -39780092 + AluSq SINE Alu 1 301 -12 189 279 127 76 chr15 61600546 61600643 -39779878 + MER5B DNA MER1_type 12 121 -57 2449 74 0 0 chr15 61600643 61600941 -39779580 - AluSg SINE Alu -12 298 1 189 279 127 76 chr15 61600941 61601001 -39779520 + MER5B DNA MER1_type 121 177 -1 22 35 0 0 chr15 61601583 61601612 -39778909 + AT_rich Low_complexity Low_complexity 1 29 0 628 130 0 10 chr15 61601769 61601869 -39778652 - L1PA15 LINE L1 -21 6144 6046 47 0 0 0 chr15 61601944 61601991 -39778530 + AT_rich Low_complexity Low_complexity 1 47 0 1842 162 14 3 chr15 61602738 61603034 -39777487 + AluJo SINE Alu 1 299 -13 1854 144 10 7 chr15 61603570 61603861 -39776660 - AluSx SINE Alu -16 296 5 21 0 0 0 chr15 61603865 61603886 -39776635 + AT_rich Low_complexity Low_complexity 1 21 0 2345 95 0 3 chr15 61604583 61604887 -39775634 + AluSq SINE Alu 1 303 -10 28 0 0 0 chr15 61605203 61605231 -39775290 + AT_rich Low_complexity Low_complexity 1 28 0 1988 139 3 19 chr15 61605291 61605601 -39774920 - AluSx SINE Alu -3 309 5 23 33 0 0 chr15 61605661 61605691 -39774830 + AT_rich Low_complexity Low_complexity 1 30 0 2037 146 0 3 chr15 61606022 61606323 -39774198 + AluSx SINE Alu 1 300 -12 362 295 18 27 chr15 61606437 61606517 -39774004 - L2 LINE L2 0 3272 3192 783 183 16 0 chr15 61606517 61606643 -39773878 + FLAM_A SINE Alu 1 128 -5 362 295 18 27 chr15 61606643 61606674 -39773847 - L2 LINE L2 -80 3192 3162 42 36 0 0 chr15 61606680 61606736 -39773785 + AT_rich Low_complexity Low_complexity 1 56 0 1661 154 4 11 chr15 61606738 61607004 -39773517 - AluJb SINE Alu -42 270 7 787 317 89 28 chr15 61607178 61607843 -39772678 - L2 LINE L2 -243 3029 2325 290 291 78 10 chr15 61607843 61607946 -39772575 - L2 LINE L2 -46 3226 3117 200 108 0 27 chr15 61608034 61608071 -39772450 + (CGGGGG)n Simple_repeat Simple_repeat 5 40 0 232 316 111 53 chr15 61608156 61608346 -39772175 - L2 LINE L2 -995 2319 2119 319 248 99 58 chr15 61608694 61608815 -39771706 + MIR SINE MIR 6 131 -131 780 202 112 6 chr15 61609119 61609297 -39771224 - MER20 DNA MER1_type 0 219 23 364 226 35 26 chr15 61609325 61609440 -39771081 + L1ME3A LINE L1 6055 6170 0 202 277 0 0 chr15 61610384 61610431 -39770090 + CT-rich Low_complexity Low_complexity 4 50 0 235 211 56 14 chr15 61611162 61611233 -39769288 - L1ME4a LINE L1 -30 6091 6018 2035 120 38 0 chr15 61612422 61612713 -39767808 + AluSg SINE Alu 1 302 -8 3979 155 112 24 chr15 61612974 61613212 -39767309 - L1MB7 LINE L1 -19 6165 5949 2410 88 0 0 chr15 61613212 61613507 -39767014 + AluSg SINE Alu 1 295 -15 3979 155 112 24 chr15 61613507 61614113 -39766408 - L1MB7 LINE L1 -235 5949 5253 4336 193 15 75 chr15 61614114 61614712 -39765809 - L1MB7 LINE L1 -1101 5045 4544 1930 150 0 20 chr15 61614712 61615018 -39765503 - AluSx SINE Alu -12 300 1 4336 193 15 75 chr15 61615018 61615544 -39764977 - L1MB7 LINE L1 -1602 4544 3988 1729 126 3 114 chr15 61615545 61615879 -39764642 - AluJb SINE Alu -15 297 1 198 319 96 32 chr15 61616006 61616100 -39764421 + MIR SINE MIR 23 122 -86 433 343 59 43 chr15 61616434 61616857 -39763664 + L2 LINE L2 2228 2657 -657 237 318 0 15 chr15 61616966 61617032 -39763489 + MIR SINE MIR 3 67 -195 1874 77 0 4 chr15 61617033 61617268 -39763253 - AluSg SINE Alu -19 291 58 237 33 0 0 chr15 61617310 61617340 -39763181 + (TTA)n Simple_repeat Simple_repeat 1 30 0 224 175 35 0 chr15 61617341 61617398 -39763123 + (TTTG)n Simple_repeat Simple_repeat 1 59 0 2283 87 3 3 chr15 61618670 61618959 -39761562 - AluSp SINE Alu -24 289 1 1868 114 23 4 chr15 61618975 61619238 -39761283 - AluSx SINE Alu -44 268 1 491 209 108 23 chr15 61619239 61619368 -39761153 + MIR SINE MIR 56 195 -67 1741 156 14 7 chr15 61620342 61620625 -39759896 - AluJo SINE Alu -27 285 1 330 267 48 29 chr15 61620645 61620750 -39759771 + MIR3 SINE MIR 87 193 -15 823 258 159 41 chr15 61620784 61621302 -39759219 + L2 LINE L2 2650 3256 -57 180 77 0 0 chr15 61621302 61621328 -39759193 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 823 258 159 41 chr15 61621328 61621394 -39759127 + L2 LINE L2 3256 3313 0 1662 255 100 68 chr15 61621465 61621985 -39758536 - HAL1 LINE L1 -1604 903 346 1970 139 3 3 chr15 61621985 61622279 -39758242 - AluJb SINE Alu -18 294 1 1662 255 100 68 chr15 61622279 61622579 -39757942 - HAL1 LINE L1 -2161 346 57 1248 221 47 0 chr15 61622633 61622931 -39757590 - L1MD2 LINE L1 -4 6355 6044 2377 84 3 0 chr15 61622941 61623237 -39757284 - AluSp SINE Alu -15 298 2 2413 60 0 10 chr15 61623241 61623541 -39756980 - AluY SINE Alu -14 297 1 2357 90 0 3 chr15 61623639 61623940 -39756581 - AluSg SINE Alu -10 300 1 1238 109 11 16 chr15 61623974 61624157 -39756364 - AluSx SINE Alu -130 182 1 1691 149 0 8 chr15 61624168 61624423 -39756098 - AluJb SINE Alu -25 287 35 2191 125 3 0 chr15 61624428 61624725 -39755796 - AluSx SINE Alu -14 298 1 4475 203 59 70 chr15 61624737 61624873 -39755648 + L1M4 LINE L1 3743 3879 -2267 1568 140 19 72 chr15 61624873 61625180 -39755341 - AluJb SINE Alu -21 291 1 4475 203 59 70 chr15 61625180 61625642 -39754879 + L1M4 LINE L1 3879 4345 -1801 2425 94 0 0 chr15 61625642 61625950 -39754571 + AluY SINE Alu 1 308 -3 4475 203 59 70 chr15 61625950 61626591 -39753930 + L1M4 LINE L1 4345 4992 -1154 1433 194 14 10 chr15 61626591 61626879 -39753642 + AluJo SINE Alu 1 289 -23 1740 154 61 0 chr15 61626886 61627179 -39753342 + AluSx SINE Alu 1 311 -1 4475 203 59 70 chr15 61627179 61627467 -39753054 + L1M4 LINE L1 4998 5263 -883 2262 105 3 10 chr15 61627677 61627991 -39752530 + AluSx SINE Alu 1 312 0 196 261 85 137 chr15 61627996 61628149 -39752372 - L2 LINE L2 -299 2973 2829 1902 51 0 21 chr15 61628245 61628482 -39752039 - L1PA8 LINE L1 -2 6170 5939 381 342 112 20 chr15 61628528 61628832 -39751689 - L2 LINE L2 -610 2704 2373 21 57 0 0 chr15 61628860 61628895 -39751626 + AT_rich Low_complexity Low_complexity 1 35 0 703 195 0 17 chr15 61629301 61629419 -39751102 - FLAM_A SINE Alu -17 116 1 2070 120 3 23 chr15 61629659 61629960 -39750561 + AluSx SINE Alu 1 295 -17 1367 186 50 4 chr15 61629985 61630243 -39750278 - AluJo SINE Alu -29 283 14 3453 138 26 23 chr15 61630249 61630865 -39749656 - L1MD1 LINE L1 -308 5934 5317 22 56 0 0 chr15 61630865 61630901 -39749620 + AT_rich Low_complexity Low_complexity 1 36 0 1399 184 86 4 chr15 61630962 61631229 -39749292 - AluJo SINE Alu -23 289 1 469 219 109 22 chr15 61631274 61631411 -39749110 + LTR67 LTR ERVL 409 557 0 1826 122 0 93 chr15 61631502 61631846 -39748675 + AluJb SINE Alu 1 312 0 2084 102 7 0 chr15 61631846 61632120 -39748401 + AluSx SINE Alu 1 276 -36 2454 80 0 13 chr15 61632120 61632434 -39748087 + AluSp SINE Alu 2 311 -2 313 136 119 0 chr15 61632619 61632678 -39747843 - MER106A DNA MER1_type -115 121 56 2376 73 3 29 chr15 61632718 61633034 -39747487 + AluSp SINE Alu 1 308 -5 2269 102 7 0 chr15 61633437 61633741 -39746780 - AluSp SINE Alu -1 312 7 1470 168 0 51 chr15 61633777 61633914 -39746607 - AluJo SINE Alu -52 260 118 2125 103 0 33 chr15 61633914 61634066 -39746455 - AluSx SINE Alu -20 292 137 405 0 0 0 chr15 61634066 61634111 -39746410 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 2419 68 3 0 chr15 61634112 61634408 -39746113 - AluY SINE Alu -14 297 1 2123 99 32 0 chr15 61634410 61634694 -39745827 - AluSg SINE Alu -17 293 1 2125 103 0 33 chr15 61634694 61634838 -39745683 - AluSx SINE Alu -176 136 1 1470 168 0 51 chr15 61634838 61634974 -39745547 - AluJo SINE Alu -194 118 1 1532 103 15 0 chr15 61635243 61635447 -39745074 + AluSq SINE Alu 98 304 -9 1467 143 127 27 chr15 61635475 61635776 -39744745 + AluSx SINE Alu 1 327 0 603 157 0 0 chr15 61635781 61635870 -39744651 - FLAM_C SINE Alu -25 118 30 682 254 106 91 chr15 61635965 61636429 -39744092 + HAL1 LINE L1 48 518 -1989 421 325 21 11 chr15 61636497 61636685 -39743836 + HAL1 LINE L1 637 826 -1681 796 120 8 0 chr15 61636709 61636826 -39743695 - AluY SINE Alu -10 301 184 1398 98 13 60 chr15 61636826 61637018 -39743503 + AluSg/x SINE Alu 87 268 -41 2526 70 0 0 chr15 61637018 61637319 -39743202 + AluY SINE Alu 1 301 -10 1398 98 13 60 chr15 61637319 61637360 -39743161 + AluSg/x SINE Alu 268 309 0 528 302 282 8 chr15 61637360 61637754 -39742767 - L2 LINE L2 -2011 1303 802 867 221 35 0 chr15 61637754 61637926 -39742595 - MER58A DNA MER1_type 0 224 47 907 222 5 19 chr15 61637943 61638150 -39742371 - L2 LINE L2 -2504 810 607 2181 214 77 77 chr15 61638157 61638876 -39741645 + L1M4 LINE L1 11 729 -5813 826 201 11 34 chr15 61638876 61639055 -39741466 + FAM SINE Alu 1 175 0 309 43 43 0 chr15 61639057 61639104 -39741417 + AluY SINE Alu 252 300 0 866 184 24 58 chr15 61639159 61639235 -39741286 + L1M4 LINE L1 1877 1954 -4692 1988 126 61 0 chr15 61639235 61639529 -39740992 + AluSx SINE Alu 1 312 0 866 184 24 58 chr15 61639529 61639658 -39740863 + L1M4 LINE L1 1954 2075 -4571 2368 188 50 22 chr15 61639677 61640158 -39740363 - MLT1D LTR MaLR -15 475 4 1625 147 50 11 chr15 61640346 61640625 -39739896 - AluSx SINE Alu -10 302 13 939 168 7 0 chr15 61640639 61640788 -39739733 - AluJb SINE Alu -11 301 152 259 237 140 0 chr15 61640901 61641015 -39739506 + L1M4 LINE L1 2526 2655 -3991 1647 193 0 10 chr15 61641050 61641351 -39739170 - AluJo SINE Alu -14 298 1 2218 110 3 0 chr15 61641355 61641655 -39738866 - AluSg SINE Alu -9 301 1 366 137 36 0 chr15 61641836 61641931 -39738590 + AluS SINE Alu 222 310 0 794 166 7 43 chr15 61642049 61642188 -39738333 - FLAM_C SINE Alu -3 140 7 1159 114 0 0 chr15 61642197 61642355 -39738166 - AluSq SINE Alu -19 294 137 285 128 0 0 chr15 61642366 61642413 -39738108 + (TA)n Simple_repeat Simple_repeat 1 47 0 937 134 0 108 chr15 61642439 61642625 -39737896 - AluSg/x SINE Alu -10 299 134 292 241 121 9 chr15 61642655 61642771 -39737750 - HAL1 LINE L1 -737 1770 1642 2336 67 0 0 chr15 61643177 61643461 -39737060 - AluY SINE Alu -27 284 1 1848 108 24 0 chr15 61643843 61644094 -39736427 - AluSp SINE Alu -12 301 45 2382 69 9 38 chr15 61645610 61645929 -39734592 + AluY SINE Alu 1 310 -1 268 271 29 0 chr15 61646136 61646206 -39734315 - L2 LINE L2 0 3313 3242 475 376 48 16 chr15 61646210 61646348 -39734173 + MER91A DNA MER1_type 2 149 -47 2207 102 3 29 chr15 61646348 61646663 -39733858 - AluSp SINE Alu -5 308 2 475 376 48 16 chr15 61646663 61646713 -39733808 + MER91A DNA MER1_type 149 196 0 * 529 220 78 7 chr15 61646713 61646846 -39733675 - L2 LINE L2 -64 3249 3107 1083 212 28 5 chr15 61646847 61647059 -39733462 - AluJb SINE Alu -95 217 1 241 213 0 0 chr15 61647061 61647108 -39733413 - L2 LINE L2 -244 3069 3023 * 329 307 56 39 chr15 61647105 61647284 -39733237 + L2 LINE L2 2892 3073 -240 1626 117 59 44 chr15 61647330 61647603 -39732918 + AluSx SINE Alu 14 290 -22 386 198 243 0 chr15 61647625 61647736 -39732785 + MIR SINE MIR 50 187 -75 232 104 0 90 chr15 61647753 61647820 -39732701 + (TAAAAA)n Simple_repeat Simple_repeat 2 62 0 273 218 0 0 chr15 61647840 61647895 -39732626 - MIR SINE MIR -26 236 182 2275 91 0 0 chr15 61648245 61648531 -39731990 - AluSx SINE Alu -26 286 1 303 284 68 88 chr15 61648998 61649116 -39731405 + MIR SINE MIR 37 153 -109 842 144 0 50 chr15 61649116 61649255 -39731266 + FLAM_C SINE Alu 2 133 0 303 284 68 88 chr15 61649255 61649284 -39731237 + MIR SINE MIR 153 181 -81 909 304 85 31 chr15 61649869 61650350 -39730171 - L2 LINE L2 -1 3312 2806 243 337 20 20 chr15 61650353 61650454 -39730067 - MIR SINE MIR -142 120 20 251 296 37 25 chr15 61650475 61650556 -39729965 + L2 LINE L2 3186 3267 -5 877 214 17 28 chr15 61650674 61650852 -39729669 - MER5B DNA MER1_type -2 176 1 587 251 110 10 chr15 61651028 61651291 -39729230 + L1MC4 LINE L1 7636 8041 -1 2076 113 0 3 chr15 61651314 61651624 -39728897 + AluY SINE Alu 1 309 0 2302 85 7 3 chr15 61651777 61652072 -39728449 - AluSc SINE Alu -13 296 1 888 189 0 0 chr15 61652941 61653094 -39727427 - FRAM SINE Alu -25 151 1 1830 172 0 3 chr15 61653126 61653442 -39727079 + AluJo SINE Alu 1 315 0 2205 103 23 23 chr15 61653895 61654014 -39726507 + AluSx SINE Alu 1 119 -193 342 45 0 0 chr15 61654014 61654058 -39726463 + (TAA)n Simple_repeat Simple_repeat 1 44 0 2205 103 23 23 chr15 61654058 61654248 -39726273 + AluSx SINE Alu 118 310 -2 1604 66 0 5 chr15 61654248 61654446 -39726075 + AluY SINE Alu 106 302 -9 560 157 0 49 chr15 61654975 61655077 -39725444 - Tigger7 DNA MER2_type 0 2587 2491 * 732 239 0 38 chr15 61655075 61655234 -39725287 - Tigger7 DNA MER2_type -466 267 115 1190 112 0 6 chr15 61655234 61655403 -39725118 + AluSg/x SINE Alu 127 294 -16 2064 93 14 4 chr15 61655479 61655793 -39724728 - AluSp SINE Alu 0 317 1 1988 157 0 0 chr15 61655824 61656117 -39724404 - AluJb SINE Alu -17 295 3 1116 146 6 0 chr15 61656124 61656288 -39724233 - AluJb SINE Alu -10 302 138 273 29 0 0 chr15 61656376 61656410 -39724111 + (CA)n Simple_repeat Simple_repeat 2 35 0 238 311 59 25 chr15 61656801 61656920 -39723601 + MIR SINE MIR 9 131 -131 839 137 0 58 chr15 61657586 61657725 -39722796 + FLAM_C SINE Alu 3 133 0 287 310 210 15 chr15 61657909 61658357 -39722164 - L2 LINE L2 -54 3259 2717 2265 90 0 7 chr15 61658935 61659223 -39721298 + AluSc SINE Alu 2 287 -22 297 184 357 10 chr15 61659511 61659609 -39720912 - L2 LINE L2 0 3313 3182 250 352 109 16 chr15 61659627 61659755 -39720766 + L2 LINE L2 3117 3256 -16 203 184 0 0 chr15 61660541 61660579 -39719942 - L2 LINE L2 -11 3302 3265 191 353 20 80 chr15 61660636 61660786 -39719735 - L2 LINE L2 -145 3127 2987 * 763 248 63 0 chr15 61660785 61660991 -39719530 - MIR SINE MIR 0 262 44 2256 47 43 0 chr15 61661296 61661573 -39718948 + AluY SINE Alu 1 289 -22 403 241 113 45 chr15 61662713 61662846 -39717675 + MIR SINE MIR 100 241 -21 814 143 0 8 chr15 61662846 61662972 -39717549 + FLAM_C SINE Alu 1 125 -18 1783 157 7 17 chr15 61662994 61663287 -39717234 + AluJo SINE Alu 12 301 -11 2399 98 0 16 chr15 61663361 61663676 -39716845 - AluSg SINE Alu 0 310 1 1282 118 5 16 chr15 61663709 61663895 -39716626 - AluSx SINE Alu -128 184 1 1686 153 0 8 chr15 61663906 61664161 -39716360 - AluJb SINE Alu -25 287 35 2217 124 3 0 chr15 61664166 61664464 -39716057 - AluSx SINE Alu -13 299 1 4617 202 54 65 chr15 61664476 61664612 -39715909 + L1M4 LINE L1 3743 3879 -2277 1588 140 19 72 chr15 61664612 61664919 -39715602 - AluJb SINE Alu -21 291 1 4617 202 54 65 chr15 61664919 61665381 -39715140 + L1M4 LINE L1 3879 4344 -1812 2446 94 0 0 chr15 61665381 61665689 -39714832 + AluY SINE Alu 1 308 -3 4617 202 54 65 chr15 61665689 61666330 -39714191 + L1M4 LINE L1 4344 4990 -1166 1666 174 10 7 chr15 61666330 61666618 -39713903 + AluJo SINE Alu 1 289 -23 1756 154 61 0 chr15 61666625 61666918 -39713603 + AluSx SINE Alu 1 311 -1 4617 202 54 65 chr15 61666918 61667274 -39713247 + L1M4 LINE L1 4996 5331 -825 1492 90 5 0 chr15 61667276 61667464 -39713057 - AluSg/x SINE Alu -13 297 109 578 212 45 15 chr15 61667464 61667596 -39712925 + Tigger1 DNA MER2_type 252 387 -2031 2465 67 13 0 chr15 61667601 61667900 -39712621 - AluSp SINE Alu -5 308 6 1264 182 89 79 chr15 61668011 61668062 -39712459 + L1M4 LINE L1 4951 5000 -1146 649 208 23 8 chr15 61668062 61668192 -39712329 + FLAM_A SINE Alu 1 132 -1 1264 182 89 79 chr15 61668192 61668418 -39712103 + L1M4 LINE L1 5000 5222 -924 2063 132 37 0 chr15 61668418 61668713 -39711808 - AluSx SINE Alu -6 306 1 1264 182 89 79 chr15 61668713 61668724 -39711797 + L1M4 LINE L1 5222 5231 -915 823 148 0 63 chr15 61668724 61668866 -39711655 - FLAM_C SINE Alu 0 133 1 1264 182 89 79 chr15 61668866 61668927 -39711594 + L1M4 LINE L1 5231 5309 -837 321 26 0 0 chr15 61668927 61668965 -39711556 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1264 182 89 79 chr15 61668965 61669003 -39711518 + L1M4 LINE L1 5309 5345 -801 840 263 0 0 chr15 61669003 61669023 -39711498 + AluJb SINE Alu 113 132 -180 1680 152 43 23 chr15 61669023 61669325 -39711196 + AluJb SINE Alu 1 308 -4 840 263 0 0 chr15 61669325 61669483 -39711038 + AluJb SINE Alu 131 291 -21 218 184 0 0 chr15 61669565 61669603 -39710918 + CT-rich Low_complexity Low_complexity 1 38 0 805 198 80 16 chr15 61669617 61669804 -39710717 + MIR SINE MIR 22 220 -42 1828 101 76 22 chr15 61669807 61670074 -39710447 + AluSp SINE Alu 6 290 -23 188 33 0 33 chr15 61670074 61670104 -39710417 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 1593 200 23 26 chr15 61670489 61670799 -39709722 - AluJb SINE Alu -3 309 1 416 219 47 121 chr15 61671386 61671601 -39708920 + L2 LINE L2 3094 3292 -21 386 242 97 6 chr15 61672021 61672186 -39708335 + L1ME1 LINE L1 4235 4414 -1732 2520 76 0 0 chr15 61672187 61672491 -39708030 + AluY SINE Alu 1 304 -7 1444 210 0 11 chr15 61672502 61672774 -39707747 + AluJb SINE Alu 1 269 -43 241 197 33 0 chr15 61672785 61672846 -39707675 + AluSc SINE Alu 237 299 0 1107 163 0 0 chr15 61672865 61673031 -39707490 + AluJb SINE Alu 134 299 -13 2777 240 34 21 chr15 61673031 61673740 -39706781 + L1ME1 LINE L1 5423 6140 -26 1814 177 0 3 chr15 61673778 61674078 -39706443 + AluJb SINE Alu 1 299 -13 2078 122 7 3 chr15 61674931 61675219 -39705302 - AluSx SINE Alu -23 289 1 653 154 10 0 chr15 61675443 61675547 -39704974 - AluJb SINE Alu -207 105 1 696 129 0 107 chr15 61675647 61675690 -39704831 - FLAM_C SINE Alu -186 126 80 2258 92 0 3 chr15 61675690 61675996 -39704525 - AluSc SINE Alu 0 305 1 696 129 0 107 chr15 61675996 61676091 -39704430 - FLAM_C SINE Alu -232 80 2 262 205 26 0 chr15 61676440 61676518 -39704003 + (TA)n Simple_repeat Simple_repeat 2 81 0 1796 164 11 7 chr15 61676537 61676824 -39703697 + AluSx SINE Alu 11 298 -14 562 324 32 9 chr15 61677521 61677740 -39702781 + MIR SINE MIR 11 234 -28 180 0 0 0 chr15 61677749 61677769 -39702752 + (CTG)n Simple_repeat Simple_repeat 1 20 0 1906 128 42 21 chr15 61678205 61678494 -39702027 + AluSp SINE Alu 4 298 -15 807 189 0 0 chr15 61678501 61678644 -39701877 + FLAM_C SINE Alu 1 143 0 418 179 0 0 chr15 61678690 61678768 -39701753 - AluS SINE Alu -2 309 232 2561 50 7 3 chr15 61678894 61679196 -39701325 - AluY SINE Alu -8 303 1 515 191 0 32 chr15 61679211 61679305 -39701216 - AluJb SINE Alu -35 277 187 841 92 18 0 chr15 61679306 61679415 -39701106 + AluSp SINE Alu 1 111 -202 280 179 18 18 chr15 61679415 61679471 -39701050 - AluS SINE Alu -204 99 44 233 282 24 12 chr15 61679672 61679757 -39700764 + L2 LINE L2 3187 3272 0 2047 122 18 43 chr15 61680615 61680942 -39699579 - MER1B DNA MER1_type 0 339 21 2596 56 0 3 chr15 61680994 61681297 -39699224 - AluSp SINE Alu -11 302 1 1054 225 14 0 chr15 61681297 61681506 -39699015 + AluJb SINE Alu 101 312 0 2141 127 0 0 chr15 61682006 61682297 -39698224 - AluSx SINE Alu -21 291 1 24 0 0 0 chr15 61686242 61686266 -39694255 + AT_rich Low_complexity Low_complexity 1 24 0 1870 159 30 3 chr15 61686732 61687034 -39693487 + AluJb SINE Alu 1 310 -2 405 255 39 0 chr15 61688213 61688315 -39692206 - MIR3 SINE MIR -41 167 62 1933 138 7 37 chr15 61688433 61688729 -39691792 - AluSx SINE Alu -25 287 1 409 179 48 0 chr15 61688731 61688815 -39691706 - AluJo/FLAM SINE Alu -182 130 43 393 211 22 0 chr15 61688822 61688914 -39691607 - AluSc SINE Alu -108 191 127 362 325 17 8 chr15 61689403 61689523 -39690998 - L2 LINE L2 -1 3271 3151 494 289 69 12 chr15 61689533 61689706 -39690815 + MER5A DNA MER1_type 1 183 -6 674 130 0 28 chr15 61689834 61689942 -39690579 + AluJb SINE Alu 198 302 -10 551 245 61 0 chr15 61689949 61690096 -39690425 + MIR SINE MIR 20 175 -87 1763 139 95 0 chr15 61690097 61690370 -39690151 - AluSx SINE Alu -13 299 1 747 82 36 0 chr15 61690505 61690615 -39689906 + AluSq/x SINE Alu 12 125 -188 1599 114 102 8 chr15 61690620 61690743 -39689778 + AluSg SINE Alu 1 111 -199 189 0 0 0 chr15 61690743 61690764 -39689757 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1599 114 102 8 chr15 61690764 61690886 -39689635 + AluSg SINE Alu 111 269 -41 986 50 19 25 chr15 61690887 61691046 -39689475 + (GAAA)n Simple_repeat Simple_repeat 3 160 0 1647 185 11 3 chr15 61691074 61691361 -39689160 + AluJo SINE Alu 1 289 -23 270 136 0 0 chr15 61691362 61691406 -39689115 + (CA)n Simple_repeat Simple_repeat 2 45 0 1571 224 50 36 chr15 61691406 61691822 -39688699 + L1MD2 LINE L1 5923 6344 -15 526 177 159 129 chr15 61691823 61691916 -39688605 - Charlie1 DNA MER1_type -41 2720 2631 2305 116 7 0 chr15 61691916 61692226 -39688295 + AluSx SINE Alu 1 312 0 526 177 159 129 chr15 61692226 61692274 -39688247 - Charlie1 DNA MER1_type -130 2631 2586 2228 119 0 0 chr15 61692274 61692577 -39687944 + AluSq SINE Alu 1 303 -10 526 177 159 129 chr15 61692577 61692874 -39687647 - Charlie1 DNA MER1_type -175 2586 2268 327 34 17 34 chr15 61692877 61692936 -39687585 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 2259 82 4 4 chr15 61692937 61693217 -39687304 - AluSp SINE Alu -33 280 1 920 77 43 0 chr15 61693217 61693334 -39687187 - AluSq/x SINE Alu -166 146 25 1506 176 32 35 chr15 61693376 61693493 -39687028 + AluJo SINE Alu 9 125 -187 2183 98 41 3 chr15 61693493 61693788 -39686733 - AluSg SINE Alu -4 306 1 1506 176 32 35 chr15 61693788 61693954 -39686567 + AluJo SINE Alu 125 291 -21 2443 64 0 58 chr15 61694022 61694352 -39686169 + AluY SINE Alu 1 311 0 505 273 45 45 chr15 61694356 61694554 -39685967 + MIR SINE MIR 57 254 -8 649 260 109 57 chr15 61694854 61694944 -39685577 + MLT1K LTR MaLR 310 394 -194 2329 84 0 0 chr15 61694944 61695281 -39685240 + AluY SINE Alu 1 337 0 649 260 109 57 chr15 61695281 61695454 -39685067 + MLT1K LTR MaLR 394 588 0 832 289 95 27 chr15 61695454 61695821 -39684700 - L3 LINE CR1 -874 703 312 2248 100 3 3 chr15 61696054 61696355 -39684166 - AluSg1 SINE Alu -8 301 1 2181 114 10 3 chr15 61696505 61696803 -39683718 + AluSq SINE Alu 1 300 -13 2410 70 0 55 chr15 61697030 61697358 -39683163 + AluY SINE Alu 2 311 0 597 294 43 30 chr15 61697545 61697780 -39682741 - MIR SINE MIR -1 261 24 546 295 98 4 chr15 61697963 61698197 -39682324 - MIR SINE MIR -4 258 3 234 322 11 44 chr15 61698240 61698330 -39682191 - L3 LINE CR1 -1286 291 205 385 325 73 5 chr15 61698611 61698802 -39681719 + MIR SINE MIR 47 250 -12 25 31 0 0 chr15 61698901 61698933 -39681588 + AT_rich Low_complexity Low_complexity 1 32 0 245 182 0 15 chr15 61699347 61699413 -39681108 + CT-rich Low_complexity Low_complexity 4 68 0 1633 162 20 40 chr15 61699415 61699589 -39680932 - AluSg SINE Alu -13 297 130 2495 77 0 0 chr15 61699589 61699900 -39680621 - AluY SINE Alu 0 311 1 1633 162 20 40 chr15 61699900 61700028 -39680493 - AluSg SINE Alu -180 130 1 378 333 78 0 chr15 61700156 61700309 -39680212 - L2 LINE L2 -258 3014 2850 474 250 24 8 chr15 61700620 61700744 -39679777 - L2 LINE L2 -4 3309 3184 252 0 0 0 chr15 61700872 61700900 -39679621 + (A)n Simple_repeat Simple_repeat 1 28 0 466 229 122 86 chr15 61701045 61701281 -39679240 + L1MC/D LINE L1 5404 5657 -2151 405 0 0 0 chr15 61701281 61701326 -39679195 + (TA)n Simple_repeat Simple_repeat 1 45 0 466 229 122 86 chr15 61701326 61701426 -39679095 + L1MC/D LINE L1 5657 5752 -2056 26 30 0 0 chr15 61701566 61701599 -39678922 + AT_rich Low_complexity Low_complexity 1 33 0 1949 150 7 3 chr15 61701653 61701947 -39678574 + AluSx SINE Alu 1 295 -17 216 289 36 36 chr15 61703292 61703375 -39677146 - L2 LINE L2 -7 3265 3183 481 289 27 0 chr15 61703469 61703618 -39676903 - L2 LINE L2 -253 3060 2908 2087 125 0 10 chr15 61703619 61703915 -39676606 + AluSg SINE Alu 5 297 -13 346 294 160 0 chr15 61704326 61704445 -39676076 + MIR3 SINE MIR 34 171 -37 717 259 82 62 chr15 61704449 61704689 -39675832 - MLT1K LTR MaLR 0 588 354 2372 96 0 3 chr15 61704689 61704991 -39675530 - AluSx SINE Alu -11 301 1 717 259 82 62 chr15 61704991 61705037 -39675484 - MLT1K LTR MaLR -234 354 310 2357 38 108 0 chr15 61705037 61705324 -39675197 - AluYb8 SINE Alu 0 318 1 717 259 82 62 chr15 61705324 61705388 -39675133 - MLT1K LTR MaLR -278 310 230 1911 159 0 17 chr15 61705431 61705733 -39674788 + AluSx SINE Alu 1 297 -15 1828 154 31 10 chr15 61706248 61706541 -39673980 + AluJb SINE Alu 1 299 -13 23 0 0 0 chr15 61706654 61706677 -39673844 + AT_rich Low_complexity Low_complexity 1 23 0 1722 142 39 39 chr15 61707125 61707435 -39673086 - AluSx SINE Alu -2 310 1 1886 156 7 3 chr15 61707484 61707772 -39672749 - AluSx SINE Alu -23 289 1 271 263 26 0 chr15 61707797 61707873 -39672648 - L1MC/D LINE L1 -2028 5780 5703 956 181 44 58 chr15 61707884 61708058 -39672463 - AluJb SINE Alu -12 300 128 1971 109 53 7 chr15 61708058 61708342 -39672179 + AluSx SINE Alu 1 297 -15 956 181 44 58 chr15 61708342 61708393 -39672128 - AluJb SINE Alu -184 128 78 697 159 127 0 chr15 61708496 61708622 -39671899 + FRAM SINE Alu 11 152 -24 1630 140 7 56 chr15 61708675 61708800 -39671721 + AluJo SINE Alu 17 147 -165 1720 94 30 60 chr15 61708800 61709098 -39671423 + L1PA13 LINE L1 5875 6163 0 1630 140 7 56 chr15 61709098 61709257 -39671264 + AluJo SINE Alu 147 287 -25 2355 84 0 19 chr15 61710331 61710639 -39669882 - AluSg1 SINE Alu -7 302 1 2415 71 0 7 chr15 61710756 61711053 -39669468 - AluY SINE Alu -16 295 1 183 152 0 0 chr15 61711232 61711278 -39669243 + T-rich Low_complexity Low_complexity 1 46 0 2349 104 0 0 chr15 61711338 61711636 -39668885 + AluSx SINE Alu 2 299 -13 1810 153 43 7 chr15 61711644 61711945 -39668576 + AluJb SINE Alu 1 312 0 2208 92 7 3 chr15 61712159 61712452 -39668069 - AluSg SINE Alu -16 294 1 2034 120 30 10 chr15 61712523 61712824 -39667697 - AluSx SINE Alu -5 307 1 2316 77 6 16 chr15 61712824 61713137 -39667384 - AluY SINE Alu -1 310 1 2343 101 0 0 chr15 61713415 61713721 -39666800 - AluSg SINE Alu -4 306 1 243 0 0 0 chr15 61713721 61713748 -39666773 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 1533 183 0 59 chr15 61713749 61714039 -39666482 - AluJo SINE Alu -31 281 9 2234 121 0 0 chr15 61714093 61714391 -39666130 - AluSp SINE Alu -15 298 1 1448 180 92 7 chr15 61714626 61714898 -39665623 - AluJo SINE Alu -17 295 1 688 158 9 0 chr15 61715120 61715234 -39665287 - AluJ SINE Alu -8 304 190 4208 120 37 69 chr15 61715234 61716045 -39664476 - LTR1 LTR ERV1 0 785 1 1159 136 0 94 chr15 61716085 61716298 -39664223 - AluJ SINE Alu -119 193 1 1648 200 7 26 chr15 61718349 61718654 -39661867 - AluJo SINE Alu -13 299 1 2006 80 0 0 chr15 61718786 61719024 -39661497 - AluSq SINE Alu -75 238 1 2187 132 0 0 chr15 61721760 61722056 -39658465 - AluSg SINE Alu -14 296 1 269 278 35 76 chr15 61722078 61722276 -39658245 + L2 LINE L2 3112 3301 -12 1704 123 12 8 chr15 61722277 61722530 -39657991 + AluSx SINE Alu 43 296 -16 2550 62 3 0 chr15 61722607 61722913 -39657608 + AluY SINE Alu 1 307 -4 207 0 0 0 chr15 61722913 61722936 -39657585 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 306 0 0 0 chr15 61722935 61722969 -39657552 + (GA)n Simple_repeat Simple_repeat 2 35 0 1594 86 86 9 chr15 61723971 61724221 -39656300 + AluSx SINE Alu 47 313 0 359 234 172 8 chr15 61724493 61724621 -39655900 + MIR3 SINE MIR 16 164 -44 1063 176 0 0 chr15 61724654 61724830 -39655691 - FRAM SINE Alu 0 176 1 601 260 169 62 chr15 61725334 61725672 -39654849 - MLT1J LTR MaLR -102 409 36 2085 92 92 0 chr15 61725993 61726276 -39654245 - AluSx SINE Alu -1 311 3 550 168 69 8 chr15 61726339 61726470 -39654051 - L1MDa LINE L1 -4166 2374 2236 483 157 12 0 chr15 61726471 61726554 -39653967 - AluSx SINE Alu -15 294 211 770 176 0 0 chr15 61726554 61726673 -39653848 - AluSx SINE Alu -192 120 2 2327 85 3 38 chr15 61727434 61727750 -39652771 - AluSp SINE Alu -8 305 1 512 153 51 134 chr15 61727887 61727948 -39652573 + MER58B DNA MER1_type 38 102 -2318 1333 176 22 99 chr15 61727948 61728260 -39652261 - AluJb SINE Alu -24 288 1 512 153 51 134 chr15 61728260 61728355 -39652166 + MER58B DNA MER1_type 102 181 -2239 1994 117 57 10 chr15 61728376 61728674 -39651847 - AluSx SINE Alu 0 312 1 1495 159 45 74 chr15 61728681 61728990 -39651531 - AluJo SINE Alu -12 300 1 1871 163 3 0 chr15 61729044 61729352 -39651169 - AluJb SINE Alu 0 309 1 763 175 0 8 chr15 61729357 61729483 -39651038 - FLAM_C SINE Alu -16 127 3 719 213 50 0 chr15 61729485 61729626 -39650895 + MER58B DNA MER1_type 170 317 -24 1318 81 0 38 chr15 61729630 61729815 -39650706 + AluSg/x SINE Alu 127 304 -6 375 113 14 28 chr15 61729867 61729938 -39650583 + MER3 DNA MER1_type 140 209 0 238 286 0 0 chr15 61729955 61730011 -39650510 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 514 189 28 0 chr15 61731344 61731450 -39649071 + MIR3 SINE MIR 98 206 -2 3537 213 72 20 chr15 61732816 61733899 -39646622 - L1ME3A LINE L1 -9 6161 4970 341 86 17 0 chr15 61733899 61733957 -39646564 + (TA)n Simple_repeat Simple_repeat 1 59 0 3537 213 72 20 chr15 61733957 61734389 -39646132 - L1ME3A LINE L1 -1200 4970 4562 1879 171 3 3 chr15 61734518 61734817 -39645704 + AluJb SINE Alu 1 299 -13 887 128 8 23 chr15 61734884 61735017 -39645504 + FLAM_C SINE Alu 3 133 -10 1854 158 98 62 chr15 61735208 61735657 -39644864 - MLT1C LTR MaLR 0 467 3 240 35 0 0 chr15 61735816 61735845 -39644676 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1625 102 4 21 chr15 61735848 61736084 -39644437 - AluSc SINE Alu -36 273 42 723 173 8 15 chr15 61736104 61736237 -39644284 - AluJo SINE Alu -175 137 6 2486 67 13 0 chr15 61737120 61737418 -39643103 - AluSp SINE Alu -11 302 1 496 224 35 42 chr15 61737542 61737685 -39642836 + MER5B DNA MER1_type 1 142 -36 1966 169 0 3 chr15 61738076 61738389 -39642132 - AluJo SINE Alu 0 312 1 1848 163 3 3 chr15 61738416 61738704 -39641817 + AluJb SINE Alu 1 288 -24 1785 157 10 37 chr15 61739718 61740012 -39640509 + AluJo SINE Alu 1 286 -26 23 33 0 0 chr15 61740029 61740059 -39640462 + AT_rich Low_complexity Low_complexity 1 30 0 1548 178 50 20 chr15 61740120 61740423 -39640098 + AluJo SINE Alu 1 312 0 1632 191 0 0 chr15 61740851 61740865 -39639656 - AluJb SINE Alu -39 273 260 964 128 0 17 chr15 61740865 61741037 -39639484 + (TTCC)n Simple_repeat Simple_repeat 4 172 0 1632 191 0 0 chr15 61741037 61741294 -39639227 - AluJb SINE Alu -51 261 2 30 27 0 0 chr15 61741339 61741376 -39639145 + AT_rich Low_complexity Low_complexity 1 37 0 2971 174 23 7 chr15 61741390 61742117 -39638404 + L1MB5 LINE L1 5086 5826 -348 894 133 0 8 chr15 61742121 61742249 -39638272 + FLAM_C SINE Alu 6 132 -11 1965 152 0 13 chr15 61742253 61742563 -39637958 + AluSx SINE Alu 1 306 -6 2493 79 0 3 chr15 61742563 61742867 -39637654 + AluSx SINE Alu 3 305 -7 210 170 0 21 chr15 61743005 61743052 -39637469 + (CA)n Simple_repeat Simple_repeat 1 46 0 1975 158 3 6 chr15 61743661 61743972 -39636549 + AluJb SINE Alu 1 310 -2 273 219 41 0 chr15 61744080 61744153 -39636368 - L2 LINE L2 0 3313 3238 2537 56 3 0 chr15 61744550 61744854 -39635667 + AluY SINE Alu 2 306 -5 651 183 0 17 chr15 61744994 61745109 -39635412 + FLAM_A SINE Alu 4 116 -17 1797 158 11 7 chr15 61746285 61746564 -39633957 - AluSx SINE Alu -22 290 11 244 211 26 0 chr15 61746583 61746659 -39633862 + (TA)n Simple_repeat Simple_repeat 2 79 0 573 143 0 11 chr15 61747008 61747099 -39633422 + AluJ/FLAM SINE Alu 2 91 -221 1828 154 7 7 chr15 61747103 61747389 -39633132 + AluSc SINE Alu 1 286 -23 231 98 0 0 chr15 61747506 61747547 -39632974 + AluSc SINE Alu 263 303 0 1457 147 127 27 chr15 61747576 61747877 -39632644 + AluSx SINE Alu 1 327 0 566 157 0 0 chr15 61747882 61747971 -39632550 - FLAM_C SINE Alu -25 118 30 668 254 106 91 chr15 61748066 61748530 -39631991 + HAL1 LINE L1 48 518 -1989 398 314 16 21 chr15 61748598 61748789 -39631732 + HAL1 LINE L1 637 826 -1681 24 0 0 0 chr15 61748789 61748813 -39631708 + AT_rich Low_complexity Low_complexity 1 24 0 350 138 0 0 chr15 61748813 61748871 -39631650 - Alu SINE Alu 0 300 243 362 286 143 11 chr15 61749675 61749864 -39630657 + MIR SINE MIR 21 234 -28 2540 61 0 0 chr15 61751055 61751350 -39629171 - AluY SINE Alu -16 295 1 180 0 0 0 chr15 61751513 61751533 -39628988 + (A)n Simple_repeat Simple_repeat 1 20 0 757 140 0 0 chr15 61752170 61752277 -39628244 - U6 snRNA snRNA 0 107 1 2635 49 0 3 chr15 61752307 61752612 -39627909 - AluY SINE Alu -7 304 1 2443 79 3 3 chr15 61752640 61752943 -39627578 - AluSp SINE Alu -10 303 1 621 202 57 0 chr15 61753426 61753550 -39626971 - FLAM_A SINE Alu -1 132 2 22 0 0 0 chr15 61753550 61753572 -39626949 + AT_rich Low_complexity Low_complexity 1 22 0 2256 126 0 0 chr15 61753572 61753882 -39626639 + AluSx SINE Alu 1 310 -2 832 253 159 49 chr15 61754063 61754554 -39625967 - L1MC4a LINE L1 -1849 5959 5415 2134 125 13 0 chr15 61754562 61754865 -39625656 - AluSx SINE Alu -5 307 1 419 214 36 7 chr15 61755176 61755316 -39625205 + CT-rich Low_complexity Low_complexity 4 147 0 2199 104 3 19 chr15 61755491 61755799 -39624722 + AluSx SINE Alu 1 303 -9 2330 90 0 0 chr15 61755848 61756136 -39624385 + AluSc SINE Alu 1 288 -21 184 396 32 0 chr15 61756179 61756333 -39624188 - L2 LINE L2 -644 2670 2512 325 105 0 53 chr15 61756660 61756717 -39623804 - Charlie1 DNA MER1_type -1 2760 2707 2322 92 7 0 chr15 61756718 61757011 -39623510 - AluSp SINE Alu -18 295 1 242 152 0 0 chr15 61757043 61757076 -39623445 + Alu SINE Alu 13 45 -258 947 185 26 0 chr15 61757168 61757319 -39623202 + AluJb SINE Alu 140 294 -18 666 169 84 0 chr15 61757321 61757475 -39623046 - Charlie1 DNA MER1_type -51 2710 2544 674 115 31 0 chr15 61757475 61757571 -39622950 - AluSq/x SINE Alu -178 134 36 2404 109 0 0 chr15 61758337 61758649 -39621872 - AluSx SINE Alu 0 312 1 227 427 0 0 chr15 61758892 61758974 -39621547 + C-rich Low_complexity Low_complexity 1 82 0 325 329 19 13 chr15 61759053 61759211 -39621310 + CT-rich Low_complexity Low_complexity 1 159 0 894 247 32 18 chr15 61759518 61759737 -39620784 + MER58A DNA MER1_type 1 222 -2 1307 216 80 86 chr15 61759741 61760083 -39620438 + L2 LINE L2 2804 3144 -169 2010 116 0 20 chr15 61760083 61760400 -39620121 - AluJb SINE Alu 0 312 1 1307 216 80 86 chr15 61760400 61760570 -39619951 + L2 LINE L2 3144 3313 0 200 356 56 0 chr15 61760799 61760889 -39619632 + L2 LINE L2 3208 3302 -11 290 276 0 35 chr15 61760913 61761000 -39619521 + L2 LINE L2 3230 3313 0 2267 168 139 11 chr15 61761036 61761489 -39619032 - MLT1F1 LTR MaLR -7 560 50 1393 217 4 0 chr15 61761496 61761763 -39618758 - AluJo SINE Alu -44 268 1 2143 122 0 3 chr15 61761809 61762105 -39618416 - AluSx SINE Alu -17 295 1 1591 185 241 64 chr15 61762195 61762838 -39617683 - L2 LINE L2 -567 2747 1991 2027 129 3 0 chr15 61763085 61763371 -39617150 + AluSx SINE Alu 1 287 -25 1409 169 3 106 chr15 61764608 61764766 -39615755 + AluSx SINE Alu 1 174 -128 2266 93 14 0 chr15 61764766 61765056 -39615465 + AluSp SINE Alu 1 294 -19 1117 118 0 0 chr15 61764908 61765069 -39615452 + AluSp SINE Alu 147 307 -6 1409 169 3 106 chr15 61765056 61765069 -39615452 + AluSx SINE Alu 174 187 -115 21 0 0 0 chr15 61765069 61765090 -39615431 + AT_rich Low_complexity Low_complexity 1 21 0 1030 81 0 0 chr15 61765092 61765228 -39615293 + AluSg/x SINE Alu 160 295 -15 778 152 0 0 chr15 61765272 61765384 -39615137 + AluSq/x SINE Alu 23 134 -178 2226 91 3 13 chr15 61765385 61765693 -39614828 + AluY SINE Alu 1 305 -6 313 309 82 10 chr15 61765695 61765792 -39614729 - MIR SINE MIR -84 124 21 2088 106 6 16 chr15 61765965 61766277 -39614244 + AluSp SINE Alu 1 309 -4 1330 176 5 0 chr15 61766764 61766986 -39613535 + L1MDa LINE L1 18 240 -6300 671 175 0 0 chr15 61767022 61767125 -39613396 + AluJb SINE Alu 1 103 -209 407 205 26 0 chr15 61767128 61767206 -39613315 + FLAM SINE Alu 51 130 -3 2296 78 7 3 chr15 61767210 61767517 -39613004 + AluSp SINE Alu 1 308 -5 1946 132 10 3 chr15 61769866 61770169 -39610352 - AluSx SINE Alu -6 306 2 21 0 0 0 chr15 61770670 61770691 -39609830 + AT_rich Low_complexity Low_complexity 1 21 0 219 36 0 0 chr15 61771502 61771530 -39608991 + (TA)n Simple_repeat Simple_repeat 1 28 0 189 242 91 15 chr15 61775240 61775306 -39605215 - L3 LINE CR1 -831 746 676 213 39 0 0 chr15 61775782 61775808 -39604713 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 255 133 0 0 chr15 61776089 61776134 -39604387 + (CA)n Simple_repeat Simple_repeat 2 46 0 752 269 37 21 chr15 61776792 61777034 -39603487 + MIR SINE MIR 5 250 -12 2075 110 10 0 chr15 61777326 61777627 -39602894 + AluSp SINE Alu 1 304 -9 255 218 18 100 chr15 61777767 61777877 -39602644 + L2 LINE L2 3167 3267 -46 369 317 75 8 chr15 61779187 61779307 -39601214 + MIR SINE MIR 16 143 -65 1575 171 4 4 chr15 61779359 61779640 -39600881 + AluJo SINE Alu 27 307 -5 2067 109 3 0 chr15 61779644 61779960 -39600561 + AluY SINE Alu 1 311 0 2192 107 0 22 chr15 61779962 61780281 -39600240 + AluSx SINE Alu 1 312 0 299 315 56 19 chr15 61783083 61783191 -39597330 - MIR SINE MIR -78 130 19 2253 94 0 0 chr15 61783713 61784012 -39596509 - AluSc SINE Alu -10 299 1 1780 101 0 0 chr15 61784058 61784305 -39596216 - AluSg SINE Alu -17 293 47 232 152 22 0 chr15 61784451 61784497 -39596024 - Alu SINE Alu -170 132 86 1148 189 0 9 chr15 61784497 61784719 -39595802 - AluJo SINE Alu -92 220 1 415 233 113 45 chr15 61784719 61784852 -39595669 - MIR SINE MIR -21 241 100 180 152 0 0 chr15 61785458 61785491 -39595030 + T-rich Low_complexity Low_complexity 1 33 0 2169 56 42 0 chr15 61785985 61786270 -39594251 - AluY SINE Alu -14 297 1 770 252 63 0 chr15 61786575 61786781 -39593740 + MIR SINE MIR 44 262 0 191 343 21 84 chr15 61786787 61786930 -39593591 + L2 LINE L2 2994 3127 -145 207 184 0 0 chr15 61786987 61787025 -39593496 + L2 LINE L2 3265 3302 -11 247 352 109 16 chr15 61787811 61787939 -39592582 - L2 LINE L2 -16 3256 3117 295 186 360 0 chr15 61787969 61788055 -39592466 + L2 LINE L2 3197 3313 0 2157 90 0 7 chr15 61788343 61788631 -39591890 - AluSc SINE Alu -22 287 2 291 306 204 19 chr15 61789188 61789657 -39590864 + L2 LINE L2 2698 3259 -54 794 137 0 58 chr15 61789841 61789980 -39590541 - FLAM_C SINE Alu 0 133 3 241 311 59 25 chr15 61790646 61790765 -39589756 - MIR SINE MIR -131 131 9 345 24 0 0 chr15 61791155 61791197 -39589324 + (TG)n Simple_repeat Simple_repeat 2 43 0 1060 146 6 0 chr15 61791285 61791449 -39589072 + AluJb SINE Alu 138 302 -10 1890 157 0 0 chr15 61791456 61791749 -39588772 + AluJb SINE Alu 3 295 -17 2242 87 7 3 chr15 61791780 61792089 -39588432 + AluSp SINE Alu 1 310 -3 656 107 223 0 chr15 61792160 61792272 -39588249 + AluJb SINE Alu 160 296 -16 1013 158 127 23 chr15 61792272 61792537 -39587984 + L1MB4 LINE L1 5823 6081 -99 336 300 52 62 chr15 61792621 61792831 -39587690 - L1MC4a LINE L1 -1854 5954 5747 1626 167 3 21 chr15 61793339 61793626 -39586895 + AluJo SINE Alu 13 294 -18 417 256 111 47 chr15 61793645 61793817 -39586704 + MIR SINE MIR 36 218 -44 207 0 0 0 chr15 61793868 61793891 -39586630 + (A)n Simple_repeat Simple_repeat 1 23 0 198 176 0 0 chr15 61794495 61794546 -39585975 + (CA)n Simple_repeat Simple_repeat 1 51 0 29 47 0 0 chr15 61794994 61795037 -39585484 + AT_rich Low_complexity Low_complexity 1 43 0 724 171 0 8 chr15 61795130 61795253 -39585268 + FLAM_A SINE Alu 11 132 -10 1809 115 3 58 chr15 61795255 61795568 -39584953 + AluSx SINE Alu 12 307 -5 1758 140 55 0 chr15 61797153 61797446 -39583075 - AluSx SINE Alu -3 309 1 26 0 0 0 chr15 61797446 61797472 -39583049 + AT_rich Low_complexity Low_complexity 1 26 0 814 193 0 77 chr15 61797472 61797511 -39583010 - AluJo SINE Alu -140 172 132 1869 157 3 7 chr15 61797511 61797810 -39582711 - AluJb SINE Alu -14 298 1 814 193 0 77 chr15 61797810 61797951 -39582570 - AluJo SINE Alu -180 132 6 766 90 0 0 chr15 61798010 61798110 -39582411 + HY3 scRNA scRNA 1 100 -1 2258 35 108 0 chr15 61798486 61798772 -39581749 + AluYb8 SINE Alu 2 318 0 1996 134 0 0 chr15 61798818 61799109 -39581412 + AluSx SINE Alu 1 291 -21 989 225 14 0 chr15 61799608 61799817 -39580704 - AluJb SINE Alu 0 312 101 2465 53 0 3 chr15 61799817 61800119 -39580402 + AluSp SINE Alu 1 301 -12 690 173 0 0 chr15 61800171 61800275 -39580246 + MER1B DNA MER1_type 21 124 -173 1920 125 0 26 chr15 61800279 61800582 -39579939 + AluSx SINE Alu 1 295 -17 1371 178 46 4 chr15 61800607 61800866 -39579655 - AluJo SINE Alu -29 283 14 3477 141 24 19 chr15 61800870 61801487 -39579034 - L1MD1 LINE L1 -306 5936 5317 22 56 0 0 chr15 61801487 61801523 -39578998 + AT_rich Low_complexity Low_complexity 1 36 0 1308 184 86 4 chr15 61801584 61801851 -39578670 - AluJo SINE Alu -23 289 1 468 219 109 22 chr15 61801896 61802033 -39578488 + LTR67 LTR ERVL 409 557 0 1721 122 0 96 chr15 61802124 61802469 -39578052 + AluJb SINE Alu 1 312 0 2144 87 0 0 chr15 61802470 61802746 -39577775 + AluSx SINE Alu 1 276 -36 2338 80 0 13 chr15 61802746 61803060 -39577461 + AluSp SINE Alu 2 311 -2 314 136 119 0 chr15 61803245 61803304 -39577217 - MER106A DNA MER1_type -115 121 56 2129 70 0 43 chr15 61803344 61803646 -39576875 + AluSp SINE Alu 1 289 -24 24 77 0 0 chr15 61803681 61803733 -39576788 + AT_rich Low_complexity Low_complexity 1 52 0 2096 105 10 10 chr15 61803744 61804048 -39576473 + AluSq SINE Alu 1 304 -9 2160 116 0 0 chr15 61804260 61804563 -39575958 - AluSx SINE Alu -9 303 1 239 125 0 0 chr15 61804595 61804627 -39575894 + Alu SINE Alu 13 44 -256 1705 158 4 22 chr15 61904956 61905229 -39475292 + AluJo SINE Alu 1 268 -44 2520 62 10 0 chr15 61905235 61905539 -39474982 - AluY SINE Alu -4 307 1 1911 158 23 3 chr15 61905573 61905877 -39474644 + AluJo SINE Alu 1 310 -2 935 138 0 0 chr15 61906045 61906175 -39474346 + AluSq/x SINE Alu 1 130 -183 2471 91 0 0 chr15 61906176 61906483 -39474038 + AluY SINE Alu 1 307 -4 2490 89 0 0 chr15 61906694 61906996 -39473525 - AluSc SINE Alu -7 302 1 2163 133 0 0 chr15 61907075 61907375 -39473146 - AluSx SINE Alu -9 303 4 2125 128 3 0 chr15 61907461 61907758 -39472763 + AluSx SINE Alu 1 298 -14 432 155 87 0 chr15 61907771 61907874 -39472647 + L1MB3 LINE L1 6065 6176 -7 2693 27 7 0 chr15 61907898 61908196 -39472325 + AluY SINE Alu 1 300 -11 266 253 48 24 chr15 61908351 61908434 -39472087 + MIR3 SINE MIR 6 90 -118 591 188 0 47 chr15 61908434 61908562 -39471959 - MLT1D LTR MaLR 0 505 384 276 291 264 0 chr15 61908799 61908981 -39471540 + L2 LINE L2 2891 3120 -193 2247 111 10 0 chr15 61909011 61909317 -39471204 - AluY SINE Alu -2 309 1 1864 155 7 7 chr15 61909430 61909726 -39470795 + AluJo SINE Alu 1 296 -16 683 152 15 8 chr15 61909728 61909860 -39470661 - L1MB8 LINE L1 -1 6177 6045 1415 130 72 110 chr15 61910004 61910088 -39470433 + MER51A LTR ERV1 1 87 -547 2188 112 0 0 chr15 61910088 61910398 -39470123 + AluSc SINE Alu 1 310 0 2369 94 0 28 chr15 61910408 61910727 -39469794 + AluSg SINE Alu 1 310 0 1415 130 72 110 chr15 61910727 61911078 -39469443 + MER51A LTR ERV1 96 503 -131 2119 142 3 0 chr15 61911078 61911389 -39469132 - AluSx SINE Alu 0 312 1 1415 130 72 110 chr15 61911389 61911508 -39469013 + MER51A LTR ERV1 503 625 -9 209 305 57 71 chr15 61911540 61911681 -39468840 + MIR SINE MIR 2 140 -122 662 160 34 0 chr15 61911691 61911810 -39468711 + AluJb SINE Alu 14 136 -176 358 240 20 30 chr15 61911829 61911929 -39468592 + L1MC4 LINE L1 1995 6983 -1339 7069 86 8 15 chr15 61912813 61914278 -39466243 + SVA Other Other 206 1386 0 2277 100 0 0 chr15 61914308 61914612 -39465909 + AluSg SINE Alu 1 304 0 362 281 19 0 chr15 61914650 61914810 -39465711 + L1MEc LINE L1 726 888 -5508 1729 129 83 8 chr15 61914817 61915081 -39465440 + AluSx SINE Alu 7 290 -22 832 170 47 61 chr15 61915081 61915143 -39465378 + L1M4 LINE L1 3696 3757 -2389 1821 135 34 34 chr15 61915143 61915439 -39465082 + AluJo SINE Alu 1 296 -16 832 170 47 61 chr15 61915439 61915588 -39464933 + L1M4 LINE L1 3757 3904 -2242 883 102 61 14 chr15 61915691 61915838 -39464683 - AluY SINE Alu -157 154 1 335 263 44 29 chr15 61915840 61915853 -39464668 + MIR SINE MIR 65 76 -186 207 0 0 0 chr15 61915853 61915876 -39464645 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 335 263 44 29 chr15 61915876 61915999 -39464522 + MIR SINE MIR 76 203 -59 2423 78 3 0 chr15 61916051 61916345 -39464176 - AluSx SINE Alu -17 295 1 258 368 66 7 chr15 61916700 61916852 -39463669 + MIR SINE MIR 28 188 -74 1849 127 39 42 chr15 61917043 61917350 -39463171 + AluJo SINE Alu 1 306 -6 1373 145 56 40 chr15 61917549 61917819 -39462702 - Tigger3(Golem) DNA MER2_type -1 3028 2764 2341 107 3 3 chr15 61917819 61918127 -39462394 + AluSg SINE Alu 1 308 -2 1373 145 56 40 chr15 61918127 61918141 -39462380 - Tigger3(Golem) DNA MER2_type -265 2764 2752 2320 105 0 3 chr15 61918141 61918445 -39462076 + AluSx SINE Alu 3 305 -7 1373 145 56 40 chr15 61918445 61918456 -39462065 - Tigger3(Golem) DNA MER2_type -277 2752 2743 2030 125 0 26 chr15 61918456 61918796 -39461725 + AluSx SINE Alu 1 304 -8 1373 145 56 40 chr15 61918796 61918821 -39461700 - Tigger3(Golem) DNA MER2_type -286 2743 2717 1796 141 3 52 chr15 61918867 61919193 -39461328 - AluSx SINE Alu -2 310 1 721 176 0 8 chr15 61919233 61919358 -39461163 + AluJo SINE Alu 13 136 -176 25 0 0 0 chr15 61919358 61919383 -39461138 + AT_rich Low_complexity Low_complexity 1 25 0 1526 192 38 68 chr15 61919384 61919617 -39460904 - L1M4 LINE L1 -1287 4859 4621 2190 109 3 0 chr15 61919617 61919920 -39460601 - AluY SINE Alu -6 305 2 1526 192 38 68 chr15 61919920 61920030 -39460491 - L1M4 LINE L1 -1525 4621 4509 1912 141 7 20 chr15 61920030 61920327 -39460194 + AluSx SINE Alu 1 293 -19 1526 192 38 68 chr15 61920327 61920482 -39460039 - L1M4 LINE L1 -1637 4509 4375 2100 108 7 0 chr15 61920483 61920771 -39459750 - AluSp SINE Alu -21 292 3 2359 80 0 10 chr15 61920773 61921084 -39459437 - AluY SINE Alu -3 308 1 1552 130 63 21 chr15 61921084 61921369 -39459152 - AluSp SINE Alu -16 297 1 198 0 0 0 chr15 61921370 61921392 -39459129 + (TTTTC)n Simple_repeat Simple_repeat 2 23 0 1925 143 0 0 chr15 61921392 61921672 -39458849 - AluSg SINE Alu -30 280 1 1920 138 3 10 chr15 61921672 61921969 -39458552 - AluSg SINE Alu -12 298 4 857 165 0 0 chr15 61921971 61922104 -39458417 - AluJo/FLAM SINE Alu -169 133 1 886 148 46 79 chr15 61925328 61925433 -39455088 - MER2 DNA MER2_type -135 210 103 2206 103 3 3 chr15 61925433 61925734 -39454787 - AluSq SINE Alu -12 301 1 1927 91 69 0 chr15 61925734 61926010 -39454511 - AluSx SINE Alu -17 295 1 886 148 46 79 chr15 61926010 61926119 -39454402 - MER2 DNA MER2_type -240 105 2 291 205 24 0 chr15 61926151 61926234 -39454287 - L1MA10 LINE L1 0 6334 6250 732 217 159 4 chr15 61926917 61927143 -39453378 - MIR SINE MIR 0 262 2 2346 92 0 0 chr15 61927207 61927511 -39453010 - AluSg SINE Alu -6 304 1 263 227 120 0 chr15 61927647 61927722 -39452799 - MER97a DNA MER1_type? -716 178 95 2134 92 20 3 chr15 61927722 61928026 -39452495 - AluY SINE Alu -2 309 1 1314 160 102 12 chr15 61928324 61928541 -39451980 - AluY SINE Alu -32 279 34 1535 89 31 5 chr15 61928541 61928765 -39451756 - AluSp SINE Alu -13 300 71 1314 160 102 12 chr15 61928765 61928803 -39451718 - AluY SINE Alu -277 34 1 2475 62 0 3 chr15 61928856 61929165 -39451356 - AluY SINE Alu -3 308 1 1464 174 35 3 chr15 61929170 61929329 -39451192 - AluJo SINE Alu -12 300 127 2042 125 10 0 chr15 61929329 61929626 -39450895 - AluSq SINE Alu -13 300 1 1464 174 35 3 chr15 61929626 61929753 -39450768 - AluJo SINE Alu -185 127 5 230 254 99 0 chr15 61929756 61929827 -39450694 - MER97b DNA MER1_type? -951 102 25 1808 140 24 10 chr15 61930015 61930307 -39450214 + AluJb SINE Alu 1 296 -16 1108 150 0 11 chr15 61930718 61930898 -39449623 + AluJb SINE Alu 135 312 0 1461 148 0 0 chr15 61930909 61931119 -39449402 + AluSq SINE Alu 10 219 -94 2231 77 3 13 chr15 61931155 61931453 -39449068 + AluY SINE Alu 1 295 -16 1672 106 29 141 chr15 61931980 61932320 -39448201 - AluYb8 SINE Alu -6 302 1 1381 173 6 96 chr15 61932392 61932716 -39447805 - AluJo SINE Alu -17 295 1 2455 57 0 13 chr15 61932725 61933039 -39447482 - AluSg SINE Alu 0 310 1 2241 82 0 23 chr15 61933041 61933347 -39447174 - AluY SINE Alu -8 303 5 232 273 227 23 chr15 61934864 61934996 -39445525 - MIR3 SINE MIR -11 197 39 1448 140 44 28 chr15 61935514 61935617 -39444904 + AluJo SINE Alu 35 135 -177 2204 99 3 26 chr15 61935617 61935930 -39444591 + AluSx SINE Alu 1 306 -6 1448 140 44 28 chr15 61935930 61936076 -39444445 + AluJo SINE Alu 135 288 -24 240 356 96 0 chr15 61936154 61936269 -39444252 + MIR SINE MIR 21 146 -62 1768 112 0 4 chr15 61936801 61937051 -39443470 - AluSq SINE Alu -8 305 57 2192 96 6 13 chr15 61937651 61937964 -39442557 + AluSx SINE Alu 1 311 -1 791 186 0 0 chr15 61938537 61938666 -39441855 + FLAM_C SINE Alu 5 133 0 32 26 0 0 chr15 61938666 61938705 -39441816 + AT_rich Low_complexity Low_complexity 1 39 0 1093 184 18 18 chr15 61939619 61939842 -39440679 - AluJo SINE Alu -5 307 85 413 252 148 0 chr15 61939987 61940102 -39440419 + MIR3 SINE MIR 60 191 -17 1822 169 3 3 chr15 61940351 61940653 -39439868 + AluJo SINE Alu 1 302 -10 1722 126 18 84 chr15 61940656 61940989 -39439532 + AluSx SINE Alu 1 311 -1 183 302 32 0 chr15 61940989 61941052 -39439469 - MIR SINE MIR -70 138 74 2043 136 3 7 chr15 61941081 61941389 -39439132 - AluSx SINE Alu -5 307 1 363 260 33 60 chr15 61942032 61942182 -39438339 + MIR3 SINE MIR 27 172 -36 377 36 0 0 chr15 61942907 61942962 -39437559 - AluSp/q SINE Alu -8 295 241 902 86 16 0 chr15 61943001 61943129 -39437392 - AluSp/q SINE Alu -20 293 164 223 294 221 9 chr15 61943449 61943611 -39436910 - MIR SINE MIR -60 202 10 2026 143 0 6 chr15 61944298 61944612 -39435909 + AluSx SINE Alu 1 312 0 206 281 0 0 chr15 61944797 61944854 -39435667 + MIR SINE MIR 194 250 -12 1008 86 0 14 chr15 61944854 61944993 -39435528 + AluSq/x SINE Alu 1 137 -176 2348 106 0 0 chr15 61944998 61945309 -39435212 + AluSq SINE Alu 1 311 -2 340 266 122 29 chr15 61945362 61945501 -39435020 - MIR SINE MIR -50 212 61 2176 111 0 10 chr15 61945686 61945993 -39434528 - AluSc SINE Alu -5 304 1 189 277 62 15 chr15 61946430 61946495 -39434026 - MIR SINE MIR -79 183 116 934 164 13 0 chr15 61946556 61946748 -39433773 - AluJb SINE Alu 0 322 129 2231 126 7 0 chr15 61946753 61947063 -39433458 - AluSx SINE Alu 0 312 1 2341 78 7 7 chr15 61947070 61947379 -39433142 - AluSg1 SINE Alu 0 309 1 1532 149 123 11 chr15 61947379 61947648 -39432873 - AluJb SINE Alu -13 299 1 568 159 83 23 chr15 61947768 61947900 -39432621 - MIR3 SINE MIR -20 188 49 354 309 7 36 chr15 61948080 61948219 -39432302 + MIR3 SINE MIR 51 185 -23 368 264 75 1 chr15 61948694 61948811 -39431710 + MIR SINE MIR 1 128 -80 301 286 86 0 chr15 61950062 61950167 -39430354 + MIR SINE MIR 40 153 -109 2373 74 3 0 chr15 61950176 61950473 -39430048 + AluSp SINE Alu 1 298 -15 387 314 32 8 chr15 61950890 61951014 -39429507 - MIR SINE MIR -113 149 23 285 225 40 157 chr15 61951045 61951120 -39429401 + MIR SINE MIR 44 98 -164 1892 116 65 0 chr15 61951120 61951413 -39429108 + AluSx SINE Alu 1 312 0 285 225 40 157 chr15 61951413 61951503 -39429018 + MIR SINE MIR 98 197 -65 1046 155 0 0 chr15 61951506 61951667 -39428854 + FRAM SINE Alu 1 161 -15 245 255 255 28 chr15 61952007 61952152 -39428369 + MIR SINE MIR 20 197 -11 3315 170 130 17 chr15 61952811 61953586 -39426935 + MER21B LTR ERV1 1 863 0 486 0 0 0 chr15 61953718 61953772 -39426749 + (TG)n Simple_repeat Simple_repeat 2 55 0 1600 174 31 11 chr15 61953773 61954060 -39426461 - AluSx SINE Alu -10 302 10 1928 90 0 30 chr15 61955774 61956041 -39424480 + AluSc SINE Alu 39 297 -12 469 90 134 0 chr15 61956067 61956134 -39424387 - AluSg/x SINE Alu -159 153 78 981 111 50 33 chr15 61956134 61956314 -39424207 - AluJb SINE Alu -119 193 11 2266 66 23 7 chr15 61956325 61956626 -39423895 - AluY SINE Alu -5 306 1 2197 94 3 26 chr15 61956984 61957293 -39423228 - AluSp SINE Alu -9 304 3 330 313 114 24 chr15 61958816 61958982 -39421539 + MIR SINE MIR 20 200 -62 1962 90 43 0 chr15 61959105 61959376 -39421145 + AluY SINE Alu 1 286 -25 186 71 0 0 chr15 61959376 61959404 -39421117 + (CTAAA)n Simple_repeat Simple_repeat 3 30 0 2228 98 0 3 chr15 61959416 61959712 -39420809 + AluSc SINE Alu 1 295 -14 430 326 6 37 chr15 61960242 61960470 -39420051 + MIR SINE MIR 10 227 -35 311 274 32 11 chr15 61960652 61960747 -39419774 - MIR SINE MIR -87 175 79 1949 114 16 28 chr15 61961126 61961443 -39419078 - AluSq SINE Alu 0 313 1 2183 83 3 3 chr15 61962228 61962518 -39418003 - AluSg SINE Alu -7 303 14 223 267 107 0 chr15 61962534 61962609 -39417912 - L2 LINE L2 -29 3284 3202 1890 147 10 22 chr15 61963393 61963570 -39416951 - AluJb SINE Alu -2 310 132 180 0 0 0 chr15 61963570 61963590 -39416931 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2251 68 0 4 chr15 61963590 61963871 -39416650 - AluY SINE Alu -31 280 1 1890 147 10 22 chr15 61963871 61964006 -39416515 - AluJb SINE Alu -178 134 1 2192 97 16 3 chr15 61965065 61965373 -39415148 - AluSx SINE Alu 0 312 1 1528 104 5 5 chr15 61966374 61966585 -39413936 + AluSq SINE Alu 1 211 -102 247 82 82 0 chr15 61966587 61966636 -39413885 + AluJ SINE Alu 79 131 -171 361 277 36 0 chr15 61966636 61966719 -39413802 + L1MC4 LINE L1 6617 6702 -1340 325 279 35 12 chr15 61966693 61966779 -39413742 - L1MC4 LINE L1 -1340 6702 6615 * 264 59 0 0 chr15 61966808 61966842 -39413679 + (CA)n Simple_repeat Simple_repeat 2 35 0 234 256 43 77 chr15 61967091 61967208 -39413313 - MIR SINE MIR -94 168 56 277 238 50 12 chr15 61968138 61968218 -39412303 - MIR3 SINE MIR -3 205 123 352 149 58 58 chr15 61968238 61968325 -39412196 - AluSg/x SINE Alu 0 302 216 680 172 69 0 chr15 61968325 61968441 -39412080 - AluSc SINE Alu -63 246 123 910 168 5 47 chr15 61968555 61968745 -39411776 + AluJ SINE Alu 121 302 -10 350 286 34 17 chr15 61968966 61969085 -39411436 - MIR SINE MIR -51 211 91 572 110 30 0 chr15 61969412 61969512 -39411009 + L1PA14 LINE L1 5864 5966 -195 2075 99 10 0 chr15 61969415 61969709 -39410812 + L1PA13 LINE L1 5867 6163 0 2549 39 0 10 chr15 61969725 61970035 -39410486 + AluY SINE Alu 1 307 -4 699 127 0 18 chr15 61970814 61970924 -39409597 - AluJb SINE Alu -203 109 2 411 320 17 29 chr15 61971119 61971294 -39409227 + MIR SINE MIR 31 203 -59 1970 130 62 22 chr15 61971535 61971859 -39408662 + MER1B DNA MER1_type 1 337 0 326 245 245 7 chr15 61971957 61972100 -39408421 - MIR3 SINE MIR -17 191 15 207 0 0 0 chr15 61972340 61972363 -39408158 + (TG)n Simple_repeat Simple_repeat 2 24 0 2323 76 0 25 chr15 61972453 61972768 -39407753 - AluY SINE Alu -4 307 1 1849 260 61 16 chr15 61972824 61973431 -39407090 + L1MC4a LINE L1 5268 5901 -1907 1154 272 118 54 chr15 61972855 61973653 -39406868 + L1MB7 LINE L1 5297 6145 -39 * 981 234 121 34 chr15 61973762 61973821 -39406700 - MLT2E LTR ERVL -2 626 574 2063 130 6 60 chr15 61973821 61973970 -39406551 - MER1B DNA MER1_type -2376 334 179 2059 100 38 3 chr15 61973970 61974260 -39406261 + AluSq SINE Alu 1 300 -13 2063 130 6 60 chr15 61974260 61974463 -39406058 - MER1B DNA MER1_type -2531 179 1 981 234 121 34 chr15 61974463 61974801 -39405720 - MLT2E LTR ERVL -54 574 147 339 320 191 11 chr15 61974804 61974982 -39405539 + L1MC4a LINE L1 6126 6335 -1473 1950 116 0 4 chr15 61975058 61975334 -39405187 + AluSx SINE Alu 30 304 -8 2265 67 0 3 chr15 61975345 61975661 -39404860 + AluY SINE Alu 6 320 0 1721 166 16 19 chr15 61975728 61976041 -39404480 + AluJo SINE Alu 1 312 0 1754 158 0 0 chr15 61976049 61976322 -39404199 + AluJb SINE Alu 8 280 -32 211 70 23 23 chr15 61976324 61976367 -39404154 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 2213 92 33 0 chr15 61976443 61976746 -39403775 + AluSp SINE Alu 1 313 0 210 72 58 29 chr15 61976749 61976818 -39403703 + (TA)n Simple_repeat Simple_repeat 2 72 0 711 165 0 16 chr15 61976818 61976939 -39403582 - FLAM_C SINE Alu -23 120 2 309 354 63 11 chr15 61977001 61977188 -39403333 + MIR SINE MIR 32 233 -29 1174 121 258 38 chr15 61977567 61977662 -39402859 - AluSx SINE Alu -8 294 221 2325 85 3 0 chr15 61977662 61977968 -39402553 - AluSp SINE Alu -6 307 1 1174 121 258 38 chr15 61977968 61978112 -39402409 - AluSx SINE Alu -81 221 2 401 273 23 0 chr15 61978141 61978229 -39402292 + L1MC4 LINE L1 6614 6703 -1339 400 303 0 0 chr15 61978161 61978250 -39402271 - L1MC4 LINE L1 -1339 6703 6615 * 2191 102 0 0 chr15 61978260 61978555 -39401966 - AluSc SINE Alu -14 295 1 1135 115 0 0 chr15 61978555 61978711 -39401810 - AluSg/x SINE Alu -20 292 137 516 327 51 18 chr15 61978736 61978953 -39401568 - MIR SINE MIR -32 230 7 2181 110 3 0 chr15 61978961 61979261 -39401260 + AluSg SINE Alu 1 301 -9 2098 114 3 3 chr15 61979277 61979576 -39400945 + AluSx SINE Alu 1 299 -13 1874 116 7 40 chr15 61979580 61979883 -39400638 + AluSx SINE Alu 3 295 -17 200 350 58 58 chr15 61980124 61980184 -39400337 - MER5B DNA MER1_type -58 120 61 1634 205 0 7 chr15 61980184 61980482 -39400039 - AluJo SINE Alu -16 296 1 200 350 58 58 chr15 61980482 61980541 -39399980 - MER5B DNA MER1_type -116 62 1 1368 205 0 22 chr15 61980566 61980700 -39399821 - AluJb SINE Alu -45 267 141 2190 101 3 0 chr15 61980700 61980998 -39399523 - AluSc SINE Alu -10 299 1 1368 205 0 22 chr15 61980998 61981136 -39399385 - AluJb SINE Alu -171 141 1 189 107 0 0 chr15 61981718 61981746 -39398775 + (CA)n Simple_repeat Simple_repeat 1 28 0 198 319 14 14 chr15 61981887 61981956 -39398565 + MIR SINE MIR 72 140 -68 2084 98 0 0 chr15 61982217 61982538 -39397983 + AluSg SINE Alu 5 325 0 272 323 51 16 chr15 61982905 61983048 -39397473 - MIR SINE MIR -55 153 38 2080 117 3 0 chr15 61983175 61983466 -39397055 + AluSx SINE Alu 3 294 -18 218 250 153 32 chr15 61983527 61983651 -39396870 - MIR SINE MIR -47 215 77 2091 137 0 0 chr15 61983842 61984142 -39396379 + AluSx SINE Alu 1 300 -12 880 134 15 0 chr15 61984173 61984307 -39396214 + AluSq/x SINE Alu 1 136 -176 1672 157 37 20 chr15 61984308 61984607 -39395914 + AluSx SINE Alu 1 304 -8 620 214 38 23 chr15 61984663 61984794 -39395727 - FLAM_A SINE Alu 0 133 1 1631 127 70 42 chr15 61985763 61986047 -39394474 + AluSx SINE Alu 14 305 -7 1778 146 7 17 chr15 61986197 61986498 -39394023 + AluJo SINE Alu 1 298 -14 2044 99 16 26 chr15 61986498 61986810 -39393711 + AluSc SINE Alu 1 309 0 207 176 0 0 chr15 61987073 61987107 -39393414 + GA-rich Low_complexity Low_complexity 28 61 0 246 286 0 0 chr15 61987398 61987454 -39393067 + L2 LINE L2 3258 3313 0 722 82 0 0 chr15 61987674 61987772 -39392749 - AluSp/q SINE Alu -6 307 210 351 261 101 14 chr15 61988233 61988371 -39392150 - MIR3 SINE MIR -24 184 35 1021 184 0 31 chr15 61988824 61989020 -39391501 + AluJb SINE Alu 108 297 -15 543 236 9 0 chr15 61989037 61989147 -39391374 - FLAM_A SINE Alu -19 123 13 2074 133 0 0 chr15 61989155 61989455 -39391066 - AluSg SINE Alu -9 301 2 1963 148 0 0 chr15 61989456 61989759 -39390762 - AluJo SINE Alu -3 309 7 323 284 9 0 chr15 61989777 61989886 -39390635 - L1ME2 LINE L1 -10 6154 6045 683 191 173 40 chr15 61989886 61990059 -39390462 - MER3 DNA MER1_type 0 209 14 485 171 16 73 chr15 61990059 61990182 -39390339 - L1ME2 LINE L1 -116 6048 5933 2353 77 0 3 chr15 61990184 61990494 -39390027 - AluSx SINE Alu -3 309 1 2014 97 3 0 chr15 61990503 61990792 -39389729 - AluY SINE Alu -21 290 1 484 220 8 0 chr15 61990792 61990910 -39389611 - L1ME2 LINE L1 -489 5675 5557 579 315 45 45 chr15 61991659 61992176 -39388345 + L2 LINE L2 2007 2523 -791 2336 86 3 0 chr15 61992187 61992491 -39388030 - AluSp SINE Alu -2 311 7 1034 161 65 32 chr15 61992497 61992714 -39387807 - AluJo SINE Alu -4 308 85 695 264 33 49 chr15 61992724 61993117 -39387404 + L2 LINE L2 2697 3081 -232 2292 89 3 0 chr15 61993119 61993421 -39387100 - AluSx SINE Alu -9 303 1 315 364 91 36 chr15 61993470 61993833 -39386688 + L2 LINE L2 2507 2889 -425 749 207 0 0 chr15 61994045 61994166 -39386355 + AluJb SINE Alu 156 276 -36 471 278 38 8 chr15 61994326 61994459 -39386062 + MIR SINE MIR 85 221 -41 217 299 62 49 chr15 61994658 61994802 -39385719 + L2 LINE L2 2844 2989 -283 307 246 26 0 chr15 61995325 61995439 -39385082 + CT-rich Low_complexity Low_complexity 4 120 0 2108 93 14 0 chr15 61995442 61995732 -39384789 - AluSp SINE Alu -19 294 1 556 171 27 7 chr15 61995739 61995885 -39384636 + CT-rich Low_complexity Low_complexity 4 152 0 283 157 20 0 chr15 61996278 61996329 -39384192 + MIR SINE MIR 96 147 -61 195 111 32 48 chr15 61997056 61997119 -39383402 + C-rich Low_complexity Low_complexity 2 63 0 199 313 15 15 chr15 61997500 61997567 -39382954 - MIR SINE MIR -108 154 88 349 87 0 29 chr15 61997630 61997699 -39382822 + (TG)n Simple_repeat Simple_repeat 2 68 0 186 43 0 0 chr15 61997735 61997758 -39382763 + (TG)n Simple_repeat Simple_repeat 2 24 0 195 333 0 0 chr15 61998092 61998143 -39382378 + L2 LINE L2 3222 3272 0 256 265 110 0 chr15 61998410 61998511 -39382010 + MIR SINE MIR 55 168 -66 2292 95 3 0 chr15 61998813 61999119 -39381402 - AluSp SINE Alu -6 307 1 22 0 0 0 chr15 62000454 62000476 -39380045 + AT_rich Low_complexity Low_complexity 1 22 0 1818 148 10 3 chr15 62001556 62001847 -39378674 - AluSx SINE Alu -16 296 4 557 152 62 0 chr15 62002132 62002244 -39378277 - L2 LINE L2 -1 3312 3194 365 279 0 0 chr15 62002255 62002334 -39378187 - MIR SINE MIR -105 157 79 249 316 0 13 chr15 62002748 62002824 -39377697 - L2 LINE L2 -5 3308 3234 185 332 122 44 chr15 62003183 62003388 -39377133 + L2 LINE L2 3043 3263 -50 309 350 49 20 chr15 62003417 62003663 -39376858 + MIR SINE MIR 8 260 -2 228 210 148 30 chr15 62004049 62004160 -39376361 + MIR SINE MIR 16 151 -83 965 121 5 79 chr15 62004198 62004388 -39376133 - AluSc SINE Alu -1 308 133 1993 107 3 27 chr15 62004388 62004686 -39375835 - AluSc SINE Alu -18 291 1 2229 98 3 0 chr15 62004687 62004983 -39375538 - AluSq SINE Alu -16 297 1 2071 130 0 3 chr15 62004983 62005284 -39375237 - AluSx SINE Alu -12 300 1 292 167 0 111 chr15 62005284 62005356 -39375165 + MIR SINE MIR 44 107 -101 2058 105 7 3 chr15 62006399 62006693 -39373828 + AluSx SINE Alu 1 295 -17 1212 121 0 0 chr15 62007178 62007352 -39373169 + AluSg/x SINE Alu 131 304 -6 2242 96 3 0 chr15 62007663 62007964 -39372557 - AluSc SINE Alu -7 302 1 194 295 211 0 chr15 62008361 62008456 -39372065 - MIR SINE MIR -111 151 37 1480 256 96 43 chr15 62008599 62009303 -39371218 + L1MC4 LINE L1 7147 7812 -230 2083 108 0 10 chr15 62009303 62009598 -39370923 + AluSg SINE Alu 1 292 -18 1480 256 96 43 chr15 62009598 62009682 -39370839 + L1MC4 LINE L1 7812 7890 -152 2139 100 7 0 chr15 62009682 62009972 -39370549 - AluSx SINE Alu -20 292 1 1480 256 96 43 chr15 62009972 62010013 -39370508 + L1MC4 LINE L1 7890 8021 -21 2162 112 3 3 chr15 62010107 62010411 -39370110 + AluSp SINE Alu 1 304 -9 265 311 99 0 chr15 62010464 62010608 -39369913 - MIR SINE MIR -67 141 15 1094 161 0 78 chr15 62012811 62013029 -39367492 - AluJo SINE Alu -111 201 1 712 258 49 55 chr15 62013207 62013563 -39366958 + L1MC4a LINE L1 5565 5819 -302 2055 128 3 0 chr15 62013586 62013882 -39366639 - AluSp SINE Alu -16 297 1 2302 85 0 0 chr15 62014026 62014321 -39366200 + AluSg SINE Alu 1 295 -15 660 190 36 22 chr15 62014362 62014499 -39366022 - MIR SINE MIR -64 198 60 695 257 40 14 chr15 62014575 62014797 -39365724 - L1MC/D LINE L1 -1995 5813 5586 708 269 91 66 chr15 62014797 62014863 -39365658 - MLT1H LTR MaLR 0 549 486 2122 106 0 0 chr15 62014863 62015156 -39365365 + AluSg SINE Alu 1 293 -17 708 269 91 66 chr15 62015156 62015583 -39364938 - MLT1H LTR MaLR -63 486 1 736 275 18 33 chr15 62015584 62015860 -39364661 - L1MC/D LINE L1 -2219 5589 5318 311 226 93 56 chr15 62016055 62016237 -39364284 + MIR3 SINE MIR 1 188 -62 1233 186 23 0 chr15 62019687 62019907 -39360614 - AluJo SINE Alu -18 294 70 302 167 0 0 chr15 62020867 62020921 -39359600 - L2 LINE L2 -2 3311 3258 2735 147 13 2 chr15 62021124 62021588 -39358933 - L1MB3 LINE L1 -32 6151 5683 248 258 61 0 chr15 62021608 62021674 -39358847 - MIR SINE MIR -76 186 117 333 343 82 0 chr15 62022472 62022606 -39357915 - MIR SINE MIR -64 198 54 211 335 116 47 chr15 62024115 62024545 -39355976 - L2 LINE L2 0 3272 2813 1338 43 0 0 chr15 62025117 62025278 -39355243 - L1PA4 LINE L1 0 6155 5995 2285 77 3 0 chr15 62025278 62025576 -39354945 - AluSg1 SINE Alu -10 299 1 488 30 15 0 chr15 62025844 62025910 -39354611 + (TG)n Simple_repeat Simple_repeat 2 68 0 1748 69 0 0 chr15 62026231 62026447 -39354074 - AluY SINE Alu -95 216 1 475 264 149 14 chr15 62027280 62027488 -39353033 - L2 LINE L2 0 3313 3078 403 240 118 44 chr15 62027579 62027855 -39352666 + LTR33 LTR ERVL 115 449 -72 775 243 211 28 chr15 62027877 62028380 -39352141 - L2 LINE L2 -274 3039 2447 194 248 48 57 chr15 62028671 62028776 -39351745 + L2 LINE L2 2218 2321 -993 253 304 88 54 chr15 62029127 62029331 -39351190 + MIR SINE MIR 49 259 -3 * 409 237 67 27 chr15 62029316 62029471 -39351050 - MIR SINE MIR -40 168 6 581 237 22 0 chr15 62030584 62030719 -39349802 + MER91B DNA MER1_type 3 140 -50 356 282 39 0 chr15 62030902 62031005 -39349516 + MIR3 SINE MIR 83 189 -19 375 307 47 8 chr15 62031160 62031287 -39349234 + MIR SINE MIR 80 211 -51 334 290 41 41 chr15 62031518 62031739 -39348782 + L2 LINE L2 2841 3061 -211 214 374 49 8 chr15 62031828 62031951 -39348570 + MIR SINE MIR 108 235 -27 311 247 5 30 chr15 62032553 62032661 -39347860 - MIR SINE MIR -63 145 60 1310 88 0 16 chr15 62032821 62033003 -39347518 + AluSx SINE Alu 1 179 -133 2887 128 9 19 chr15 62033389 62033820 -39346701 - MSTC LTR MaLR 0 428 2 411 68 0 0 chr15 62033820 62033879 -39346642 + (TG)n Simple_repeat Simple_repeat 2 60 0 361 259 101 38 chr15 62034039 62034197 -39346324 + MIR3 SINE MIR 12 179 -29 375 243 10 29 chr15 62034589 62034692 -39345829 - MIR SINE MIR -59 149 49 336 314 9 0 chr15 62034731 62034836 -39345685 + L3b LINE CR1 1278 1383 -200 387 226 40 5 chr15 62035082 62035204 -39345317 - MIR SINE MIR -63 145 13 575 165 52 35 chr15 62035258 62035373 -39345148 + FLAM_A SINE Alu 10 126 -16 2309 73 0 0 chr15 62035376 62035698 -39344823 + AluSx SINE Alu 1 322 0 21 0 0 0 chr15 62035702 62035723 -39344798 + AT_rich Low_complexity Low_complexity 1 21 0 1254 164 122 35 chr15 62035779 62036066 -39344455 + AluJo SINE Alu 1 312 0 1996 130 23 10 chr15 62036175 62036483 -39344038 - AluSx SINE Alu 0 312 1 1914 177 0 0 chr15 62036485 62036795 -39343726 - AluJb SINE Alu 0 312 3 252 260 125 0 chr15 62036807 62036911 -39343610 - MER113 DNA MER1_type? -401 120 4 1460 131 79 4 chr15 62037046 62037298 -39343223 + MER1B DNA MER1_type 69 339 0 248 0 31 0 chr15 62037327 62037359 -39343162 + (TG)n Simple_repeat Simple_repeat 1 33 0 593 201 76 57 chr15 62038032 62038296 -39342225 + MER1B DNA MER1_type 57 325 -14 360 0 0 0 chr15 62038349 62038389 -39342132 + (TG)n Simple_repeat Simple_repeat 1 40 0 1743 153 35 7 chr15 62039045 62039332 -39341189 - AluJb SINE Alu -17 295 1 582 302 47 22 chr15 62039332 62039564 -39340957 - MIR SINE MIR -5 257 20 1614 119 119 4 chr15 62039661 62039930 -39340591 + AluSg1 SINE Alu 1 300 -9 281 245 52 6 chr15 62040050 62040149 -39340372 - MIR SINE MIR -56 206 101 2506 52 0 3 chr15 62040371 62040679 -39339842 - AluY SINE Alu -4 307 1 2190 92 7 0 chr15 62040913 62041206 -39339315 - AluSq SINE Alu -18 295 1 2229 94 0 13 chr15 62041392 62041701 -39338820 - AluSx SINE Alu -7 305 1 1869 146 10 16 chr15 62041701 62042009 -39338512 - AluJb SINE Alu -5 307 1 2238 191 16 18 chr15 62042067 62042565 -39337956 - Charlie4a DNA MER1_type 0 508 12 180 293 0 81 chr15 62043545 62043644 -39336877 + MIR SINE MIR 98 188 -74 2216 106 0 10 chr15 62044145 62044457 -39336064 - AluSx SINE Alu -1 311 3 298 309 47 13 chr15 62044529 62044678 -39335843 + MIR SINE MIR 32 185 -77 364 210 37 0 chr15 62045097 62045178 -39335343 + MIR SINE MIR 31 114 -148 574 253 42 81 chr15 62045187 62045320 -39335201 - L1ME LINE L1 -563 5607 5470 2239 92 0 0 chr15 62045320 62045612 -39334909 - AluSq SINE Alu -17 296 5 574 253 42 81 chr15 62045612 62045786 -39334735 - L1ME LINE L1 -700 5470 5312 842 226 12 0 chr15 62045789 62045957 -39334564 - FRAM SINE Alu -5 171 2 1859 163 10 0 chr15 62045967 62046262 -39334259 - AluJb SINE Alu -14 298 1 266 290 23 15 chr15 62046267 62046398 -39334123 - L1ME LINE L1 -1119 5027 4896 2395 53 0 0 chr15 62046582 62046897 -39333624 - AluY SINE Alu 0 315 1 1158 114 6 6 chr15 62046899 62047074 -39333447 - AluSp SINE Alu -15 298 124 1613 173 23 16 chr15 62047142 62047449 -39333072 + AluJb SINE Alu 1 309 -3 234 0 0 0 chr15 62047550 62047576 -39332945 + (A)n Simple_repeat Simple_repeat 1 26 0 561 80 0 13 chr15 62047770 62047845 -39332676 + AluS SINE Alu 2 75 -237 239 65 0 0 chr15 62047846 62047877 -39332644 - Alu SINE Alu -271 31 1 1912 114 36 0 chr15 62047958 62048238 -39332283 + AluSx SINE Alu 1 290 -22 946 133 0 0 chr15 62048692 62048835 -39331686 + AluSp/q SINE Alu 171 313 0 385 330 65 32 chr15 62048872 62049057 -39331464 - MIR SINE MIR 0 262 72 1639 185 0 10 chr15 62049881 62050178 -39330343 - AluJo SINE Alu -18 294 1 252 170 0 0 chr15 62050264 62050311 -39330210 + FLAM SINE Alu 85 131 -2 815 271 122 34 chr15 62050526 62050560 -39329961 + MLT1J LTR MaLR 1 31 -480 1116 167 51 33 chr15 62050560 62050775 -39329746 - MER20 DNA MER1_type 0 219 1 815 271 122 34 chr15 62050775 62051149 -39329372 + MLT1J LTR MaLR 31 445 -66 188 299 197 28 chr15 62051378 62051632 -39328889 + L2 LINE L2 2364 2660 -654 273 342 44 76 chr15 62051844 62052160 -39328361 + L2 LINE L2 2945 3250 -22 363 342 86 11 chr15 62052166 62052353 -39328168 - MIR SINE MIR -1 261 61 342 0 0 0 chr15 62052552 62052590 -39327931 + (CA)n Simple_repeat Simple_repeat 1 38 0 965 160 252 29 chr15 62052631 62052869 -39327652 - AluSx SINE Alu -13 299 9 352 311 10 0 chr15 62052870 62052973 -39327548 + MIR3 SINE MIR 101 204 -4 1887 88 4 11 chr15 62053133 62053394 -39327127 + AluSq SINE Alu 1 259 -54 207 0 0 0 chr15 62053428 62053451 -39327070 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1657 73 229 0 chr15 62053457 62053702 -39326819 + AluY SINE Alu 1 301 0 307 272 221 6 chr15 62054284 62054442 -39326079 + MIR SINE MIR 51 242 -20 210 71 0 0 chr15 62054474 62054502 -39326019 + (T)n Simple_repeat Simple_repeat 1 28 0 1375 94 6 0 chr15 62054523 62054704 -39325817 - AluSq SINE Alu -131 182 1 2051 113 3 3 chr15 62055113 62055405 -39325116 + AluSx SINE Alu 1 292 -20 2010 108 14 0 chr15 62055419 62055706 -39324815 + AluSx SINE Alu 1 291 -21 933 67 17 0 chr15 62055706 62055825 -39324696 + AluY SINE Alu 1 121 -190 1306 76 0 43 chr15 62055925 62056109 -39324412 - AluY SINE Alu -135 176 1 1849 260 61 16 chr15 62056165 62056772 -39323749 + L1MC4a LINE L1 5268 5901 -1907 1171 271 118 54 chr15 62056196 62056994 -39323527 + L1MB7 LINE L1 5297 6145 -39 * 981 234 121 34 chr15 62057103 62057162 -39323359 - MLT2E LTR ERVL -2 626 574 2063 130 6 60 chr15 62057162 62057311 -39323210 - MER1B DNA MER1_type -2376 334 179 2059 100 38 3 chr15 62057311 62057601 -39322920 + AluSq SINE Alu 1 300 -13 2063 130 6 60 chr15 62057601 62057804 -39322717 - MER1B DNA MER1_type -2531 179 1 981 234 121 34 chr15 62057804 62058142 -39322379 - MLT2E LTR ERVL -54 574 147 339 320 191 11 chr15 62058145 62058323 -39322198 + L1MC4a LINE L1 6126 6335 -1473 1950 116 0 4 chr15 62058399 62058675 -39321846 + AluSx SINE Alu 30 304 -8 2076 114 3 0 chr15 62058686 62058975 -39321546 + AluSx SINE Alu 6 295 -17 28 48 0 0 chr15 62060075 62060117 -39320404 + GC_rich Low_complexity Low_complexity 1 42 0 572 235 56 25 chr15 62060441 62060653 -39319868 - MIR SINE MIR -2 260 41 465 269 25 19 chr15 62061387 62061547 -39318974 - MIR3 SINE MIR -4 204 44 207 161 0 0 chr15 62061617 62061648 -39318873 + (TGG)n Simple_repeat Simple_repeat 1 31 0 370 247 273 13 chr15 62061648 62061802 -39318719 - MIR SINE MIR -22 240 47 2254 113 0 0 chr15 62062201 62062510 -39318011 - AluSc SINE Alu 0 309 1 1839 144 0 23 chr15 62062512 62062818 -39317703 - AluJo SINE Alu -13 299 1 1886 116 4 0 chr15 62063249 62063516 -39317005 + AluSx SINE Alu 1 268 -44 195 270 210 30 chr15 62064282 62064382 -39316139 - MIR SINE MIR -132 130 13 1934 138 10 7 chr15 62064547 62064851 -39315670 - AluJo SINE Alu -7 305 1 244 297 0 0 chr15 62064875 62064939 -39315582 - L2 LINE L2 -295 2977 2914 196 318 0 0 chr15 62064931 62064994 -39315527 - MIR SINE MIR -74 134 72 * 268 276 79 8 chr15 62065226 62065440 -39315081 - L2 LINE L2 -304 2968 2677 189 0 0 0 chr15 62065743 62065764 -39314757 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 536 306 189 18 chr15 62065969 62066302 -39314219 + L3 LINE CR1 458 847 -730 903 129 7 7 chr15 62066307 62066446 -39314075 + AluJb SINE Alu 3 141 -171 28 29 0 0 chr15 62066470 62066505 -39314016 + AT_rich Low_complexity Low_complexity 1 35 0 2179 104 0 0 chr15 62066896 62067193 -39313328 + AluSx SINE Alu 1 297 -15 200 267 0 0 chr15 62067313 62067358 -39313163 + L3 LINE CR1 585 629 -948 27 0 0 0 chr15 62067675 62067702 -39312819 + AT_rich Low_complexity Low_complexity 1 27 0 284 302 123 30 chr15 62068451 62068686 -39311835 + L3 LINE CR1 1132 1388 -189 1590 192 14 7 chr15 62068777 62069074 -39311447 - AluJo SINE Alu -13 299 1 1659 160 40 7 chr15 62069183 62069483 -39311038 - AluJb SINE Alu 0 312 3 2219 99 0 3 chr15 62069593 62069896 -39310625 - AluSx SINE Alu -10 302 1 279 283 88 0 chr15 62070390 62070503 -39310018 + MIR SINE MIR 70 192 -70 1460 197 55 21 chr15 62070758 62070861 -39309660 + Charlie4a DNA MER1_type 1 99 -1862 1060 169 0 0 chr15 62070861 62071027 -39309494 - AluJo/FRAM SINE Alu 0 302 137 1282 122 11 0 chr15 62071027 62071041 -39309480 - AluSg/x SINE Alu -11 299 119 1460 197 55 21 chr15 62071041 62071304 -39309217 + Charlie4a DNA MER1_type 98 394 -114 424 248 0 19 chr15 62071304 62071409 -39309112 + MLT1D LTR MaLR 1 103 -402 1137 171 112 2 chr15 62071424 62071660 -39308861 + MLT1D LTR MaLR 217 504 -1 376 164 109 18 chr15 62071678 62071788 -39308733 + Charlie4a DNA MER1_type 377 496 -12 363 280 99 87 chr15 62072180 62072605 -39307916 - MLT1H LTR MaLR 0 549 120 1205 179 120 26 chr15 62072845 62073153 -39307368 - L1MD3 LINE L1 -168 7827 7491 2362 101 0 3 chr15 62073166 62073474 -39307047 + AluSx SINE Alu 1 307 -5 328 346 7 20 chr15 62073945 62074098 -39306423 - MIR SINE MIR -77 185 35 256 298 67 10 chr15 62075362 62075466 -39305055 - L2 LINE L2 -5 3267 3158 2507 60 3 7 chr15 62075823 62076124 -39304397 - AluY SINE Alu -11 300 1 516 284 97 11 chr15 62076262 62076438 -39304083 - MIR3 SINE MIR -15 193 3 34 0 0 0 chr15 62077358 62077392 -39303129 + AT_rich Low_complexity Low_complexity 1 34 0 1968 158 18 0 chr15 62077403 62077688 -39302833 - AluJb SINE Alu -21 291 2 624 290 65 66 chr15 62077918 62078045 -39302476 - L2 LINE L2 0 3313 3187 3211 87 9 2 chr15 62078045 62078492 -39302029 + L1PA8 LINE L1 5723 6172 0 624 290 65 66 chr15 62078492 62078820 -39301701 - L2 LINE L2 -126 3187 1517 472 214 12 77 chr15 62079504 62079672 -39300849 + L1MC5 LINE L1 7072 7228 -733 1363 214 84 105 chr15 62079750 62080336 -39300185 + L1MC5 LINE L1 7238 7809 -152 2521 77 3 0 chr15 62080336 62080635 -39299886 + AluSp SINE Alu 3 302 -11 1363 214 84 105 chr15 62080635 62080736 -39299785 + L1MC5 LINE L1 7809 7911 -50 193 167 0 74 chr15 62080756 62080810 -39299711 + MIR SINE MIR 213 262 0 * 308 191 88 0 chr15 62080807 62080875 -39299646 - MIR SINE MIR -121 141 68 215 150 0 25 chr15 62081174 62081214 -39299307 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 2296 97 7 0 chr15 62081683 62081982 -39298539 - AluSp SINE Alu -12 301 1 190 279 76 13 chr15 62082445 62082524 -39297997 - MIR SINE MIR -92 116 33 180 0 0 0 chr15 62084061 62084081 -39296440 + (CTGGGG)n Simple_repeat Simple_repeat 2 21 0 1935 100 60 0 chr15 62086100 62086409 -39294112 - AluSq SINE Alu 0 327 3 686 128 39 0 chr15 62086413 62086541 -39293980 - FLAM_C SINE Alu 0 142 11 237 131 0 98 chr15 62086658 62086719 -39293802 - L1MC4 LINE L1 0 8042 7988 475 143 0 0 chr15 62086724 62086787 -39293734 + AluS SINE Alu 6 68 -244 2094 111 7 11 chr15 62087116 62087418 -39293103 - AluSg SINE Alu 0 303 3 1475 103 123 0 chr15 62088219 62088423 -39292098 - AluSg/x SINE Alu -14 298 70 853 131 75 0 chr15 62088523 62088683 -39291838 + L1MB4 LINE L1 6009 6180 0 951 124 0 48 chr15 62088864 62089009 -39291512 - FLAM_C SINE Alu -5 138 1 416 250 31 103 chr15 62089754 62089919 -39290602 - MER5B DNA MER1_type -21 168 2 433 148 15 54 chr15 62090431 62090714 -39289807 + CT-rich Low_complexity Low_complexity 1 271 0 1921 106 4 0 chr15 62090720 62090975 -39289546 - AluY SINE Alu -2 309 54 396 247 80 13 chr15 62090979 62091129 -39289392 + MER3 DNA MER1_type 30 189 -20 993 271 65 14 chr15 62091445 62091796 -39288725 + L1MC4a LINE L1 5525 5893 -1915 840 69 0 0 chr15 62091939 62092041 -39288480 + AluY SINE Alu 1 102 -209 2204 113 3 52 chr15 62092166 62092494 -39288027 - AluSx SINE Alu 0 312 1 1744 178 10 13 chr15 62092624 62092922 -39287599 + AluJo SINE Alu 5 301 -11 1941 133 10 45 chr15 62092925 62093070 -39287451 + AluSx SINE Alu 1 131 -181 2521 66 0 0 chr15 62093070 62093371 -39287150 + AluY SINE Alu 1 301 -10 1941 133 10 45 chr15 62093371 62093534 -39286987 + AluSx SINE Alu 131 298 -14 310 270 108 18 chr15 62093615 62093726 -39286795 + MIR SINE MIR 18 138 -124 21 0 0 0 chr15 62094112 62094133 -39286388 + AT_rich Low_complexity Low_complexity 1 21 0 1945 146 0 17 chr15 62094234 62094529 -39285992 + AluJo SINE Alu 2 291 -21 1273 189 91 142 chr15 62094552 62095122 -39285399 + L1MC3 LINE L1 5286 5826 -1982 1854 109 0 4 chr15 62095123 62095361 -39285160 + AluSc SINE Alu 1 237 -72 539 280 106 5 chr15 62095898 62096113 -39284408 + MIR SINE MIR 20 255 -7 2078 134 3 13 chr15 62096114 62096420 -39284101 - AluSx SINE Alu -9 303 1 377 228 141 33 chr15 62096494 62096616 -39283905 - MIR SINE MIR -60 148 13 31 26 0 0 chr15 62096885 62096923 -39283598 + AT_rich Low_complexity Low_complexity 1 38 0 1036 176 6 0 chr15 62097018 62097188 -39283333 + FRAM SINE Alu 1 163 -13 565 217 9 26 chr15 62097443 62097558 -39282963 - MER81 DNA DNA -1 113 1 2383 99 0 0 chr15 62097785 62098078 -39282443 + AluSg SINE Alu 1 293 -17 263 263 220 8 chr15 62098184 62098302 -39282219 + MIR SINE MIR 70 212 -50 1789 145 30 0 chr15 62098492 62098795 -39281726 + L1MC2 LINE L1 6022 6333 -11 364 299 174 38 chr15 62099103 62099494 -39281027 - L2 LINE L2 -11 3261 2818 2039 117 3 14 chr15 62099714 62100004 -39280517 - AluSc SINE Alu -22 287 1 826 320 69 15 chr15 62100514 62100860 -39279661 + LTR16A LTR ERVL 1 374 -76 2067 138 0 7 chr15 62100860 62101165 -39279356 - AluSx SINE Alu -9 303 1 826 320 69 15 chr15 62101165 62101224 -39279297 + LTR16A LTR ERVL 374 428 -22 421 226 43 17 chr15 62101809 62101924 -39278597 + L1MC5 LINE L1 7001 7118 -843 237 95 24 24 chr15 62102030 62102072 -39278449 - Alu SINE Alu -257 42 1 2283 122 6 3 chr15 62102481 62102792 -39277729 + AluSx SINE Alu 1 312 0 309 165 38 63 chr15 62102794 62102873 -39277648 + L1MC3 LINE L1 5816 5892 -1916 5303 157 30 15 chr15 62102874 62103706 -39276815 + L1MC3 LINE L1 6738 7589 -196 2248 103 24 0 chr15 62103706 62103998 -39276523 + AluSx SINE Alu 1 299 -13 5303 157 30 15 chr15 62103998 62104173 -39276348 + L1MC3 LINE L1 7589 7760 -25 1068 181 6 6 chr15 62104173 62104355 -39276166 + AluJb SINE Alu 122 303 -9 1492 199 40 7 chr15 62104377 62104678 -39275843 + AluJo SINE Alu 1 311 -1 2202 168 68 11 chr15 62104730 62105362 -39275159 + L1ME4a LINE L1 4842 5500 -743 435 19 0 0 chr15 62105427 62105479 -39275042 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 2506 51 0 17 chr15 62105479 62105773 -39274748 - AluY SINE Alu -22 289 1 2056 147 0 14 chr15 62105785 62106078 -39274443 - AluJb SINE Alu -23 289 1 450 279 72 59 chr15 62106078 62106300 -39274221 - L1 LINE L1 -1637 4509 4285 962 183 0 0 chr15 62106326 62106490 -39274031 - MSTD LTR MaLR 0 396 233 390 252 8 92 chr15 62107016 62107147 -39273374 + MIR SINE MIR 73 192 -70 386 313 147 0 chr15 62107150 62107300 -39273221 - MIR3 SINE MIR -3 205 34 296 273 36 14 chr15 62107764 62107903 -39272618 - L1ME LINE L1 -342 5779 5638 581 286 132 15 chr15 62108060 62108469 -39272052 + L1ME4a LINE L1 5568 6024 -97 247 323 31 72 chr15 62108676 62108899 -39271622 + L2 LINE L2 2952 3165 -107 220 286 91 13 chr15 62109344 62109421 -39271100 + MIR SINE MIR 110 192 -70 291 333 111 0 chr15 62110083 62110245 -39270276 + MER117 DNA MER1_type 2 181 -16 1915 155 39 8 chr15 62110346 62110643 -39269878 + MER47A DNA MER2_type 1 287 -2036 414 0 0 0 chr15 62110643 62110689 -39269832 + (TA)n Simple_repeat Simple_repeat 2 47 0 2305 104 0 7 chr15 62110693 62110990 -39269531 - AluSc SINE Alu -14 295 1 1915 155 39 8 chr15 62110990 62111042 -39269479 + MER47A DNA MER2_type 289 366 0 508 226 183 0 chr15 62111623 62111760 -39268761 + MER5B DNA MER1_type 17 178 0 203 231 55 44 chr15 62112747 62112838 -39267683 + L2 LINE L2 2868 2959 -313 277 292 28 45 chr15 62112921 62113186 -39267335 + L1 LINE L1 4072 4336 -1810 399 321 87 85 chr15 62113306 62113605 -39266916 + L1 LINE L1 4463 4765 -1381 2046 128 3 7 chr15 62113605 62113902 -39266619 + AluSx SINE Alu 4 299 -13 399 321 87 85 chr15 62113902 62114085 -39266436 + L1 LINE L1 4765 4946 -1200 490 287 147 0 chr15 62114285 62114435 -39266086 + MER5B DNA MER1_type 7 178 0 257 272 106 15 chr15 62115129 62115276 -39265245 + MIR3 SINE MIR 29 186 -22 424 305 112 50 chr15 62116292 62117331 -39263190 - HAL1 LINE L1 -1186 1321 854 836 119 4 48 chr15 62117350 62118117 -39262404 + (TTC)n Simple_repeat Simple_repeat 1 733 0 318 316 111 47 chr15 62118150 62118536 -39261985 - HAL1 LINE L1 -1215 1292 882 349 170 9 45 chr15 62118538 62118650 -39261871 + CT-rich Low_complexity Low_complexity 1 108 0 673 116 5 53 chr15 62118651 62118840 -39261681 + (TTC)n Simple_repeat Simple_repeat 1 180 0 325 315 110 35 chr15 62118843 62119418 -39261103 - L1M4c LINE L1 -1205 1538 947 319 144 10 41 chr15 62119418 62119515 -39261006 + CT-rich Low_complexity Low_complexity 3 96 0 899 105 9 36 chr15 62119516 62119962 -39260559 + (TTC)n Simple_repeat Simple_repeat 1 433 0 765 93 4 61 chr15 62119976 62120222 -39260299 + (TTC)n Simple_repeat Simple_repeat 1 232 0 1520 112 5 0 chr15 62120230 62120435 -39260086 - AluSg/x SINE Alu -2 310 105 1348 121 89 47 chr15 62220720 62220977 -39159544 + AluJo SINE Alu 24 291 -21 2430 65 3 0 chr15 62221736 62222028 -39158493 - AluSc SINE Alu -16 293 1 2048 118 0 17 chr15 62222203 62222515 -39158006 + AluSx SINE Alu 1 307 0 197 333 0 0 chr15 62222533 62222596 -39157925 + L2 LINE L2 2720 2782 -532 21 36 0 0 chr15 62223107 62223135 -39157386 + AT_rich Low_complexity Low_complexity 1 28 0 398 235 43 35 chr15 62223176 62223291 -39157230 + MIR3 SINE MIR 90 205 -3 2337 85 7 0 chr15 62223322 62223615 -39156906 + AluSp SINE Alu 1 295 -18 2337 82 0 0 chr15 62223723 62224032 -39156489 + AluY SINE Alu 1 293 -18 1071 198 12 0 chr15 62224370 62224542 -39155979 + FAM SINE Alu 2 175 0 192 298 21 0 chr15 62224592 62224639 -39155882 + L2 LINE L2 3254 3301 -12 361 246 97 9 chr15 62224813 62224927 -39155594 + MIR SINE MIR 137 260 -2 340 304 117 23 chr15 62224934 62224978 -39155543 - MIR SINE MIR -16 246 208 2278 116 0 0 chr15 62224978 62225281 -39155240 - AluSx SINE Alu -9 303 1 340 304 117 23 chr15 62225281 62225407 -39155114 - MIR SINE MIR -54 208 60 196 284 321 0 chr15 62225659 62225768 -39154753 + MIR3 SINE MIR 50 193 -15 1851 147 3 0 chr15 62225797 62226090 -39154431 + L1MA5A LINE L1 5574 5867 -430 625 151 16 48 chr15 62226090 62226216 -39154305 - MLT2D LTR ERVL 0 414 293 2713 122 17 12 chr15 62226224 62226642 -39153879 + L1MA5A LINE L1 5873 6292 -5 1827 196 103 61 chr15 62226747 62227130 -39153391 - MLT2B1 LTR ERVL 0 520 110 2080 155 0 0 chr15 62227130 62227433 -39153088 - AluJb SINE Alu -9 303 1 1827 196 103 61 chr15 62227433 62227543 -39152978 - MLT2B1 LTR ERVL -410 110 6 326 248 255 13 chr15 62227551 62227708 -39152813 - MIR SINE MIR 0 262 68 277 274 186 40 chr15 62227919 62228043 -39152478 - MER5A DNA MER1_type -11 178 37 2457 90 6 0 chr15 62228733 62229044 -39151477 - AluSp SINE Alu 0 313 1 261 286 71 12 chr15 62229543 62229627 -39150894 - MIR SINE MIR -62 146 58 2239 99 38 29 chr15 62229736 62230078 -39150443 - L1PA11 LINE L1 0 6174 5830 272 315 126 37 chr15 62230081 62230351 -39150170 + L2 LINE L2 2621 2914 -400 227 355 152 23 chr15 62230489 62230706 -39149815 + L2 LINE L2 2902 3146 -126 551 225 92 0 chr15 62230795 62230915 -39149606 - MER94 DNA DNA -3 131 1 1523 135 51 64 chr15 62231149 62231460 -39149061 + AluJo SINE Alu 1 307 -5 2435 77 0 16 chr15 62231686 62231998 -39148523 + AluY SINE Alu 1 307 -4 2427 93 0 0 chr15 62232252 62232554 -39147967 + AluSg SINE Alu 1 302 -8 308 108 4 0 chr15 62232998 62233058 -39147463 - MADE1 DNA Mariner 0 80 36 2316 75 41 0 chr15 62233144 62233437 -39147084 + AluSq SINE Alu 1 305 -8 2321 97 0 0 chr15 62233588 62233887 -39146634 - AluSp SINE Alu -14 299 1 2241 104 10 3 chr15 62235179 62235477 -39145044 - AluSx SINE Alu -12 300 1 2492 57 3 0 chr15 62235948 62236245 -39144276 - AluY SINE Alu -13 298 1 2450 121 40 16 chr15 62236521 62236900 -39143621 + MER61D LTR ERV1 114 501 0 413 215 123 65 chr15 62236951 62237211 -39143310 - L1MC4a LINE L1 -311 5810 5570 229 285 64 71 chr15 62237259 62237694 -39142827 - L1MC4a LINE L1 -744 5402 4971 * 336 219 21 10 chr15 62237681 62237777 -39142744 - L1MB1 LINE L1 0 6168 6072 578 259 22 22 chr15 62238033 62238172 -39142349 - MIR3 SINE MIR -51 157 19 916 261 207 33 chr15 62238890 62239210 -39141311 + L2 LINE L2 2292 2555 -759 2096 144 0 6 chr15 62239210 62239522 -39140999 - AluJb SINE Alu -2 310 1 916 261 207 33 chr15 62239522 62239748 -39140773 + L2 LINE L2 2555 2933 -381 3970 184 76 97 chr15 62239769 62240610 -39139911 - L1MA10 LINE L1 -2 6332 5475 2257 103 3 0 chr15 62240610 62240912 -39139609 + AluSq SINE Alu 1 303 -10 3970 184 76 97 chr15 62240912 62241055 -39139466 - L1MA10 LINE L1 -859 5475 5331 1955 174 3 3 chr15 62241055 62241366 -39139155 - AluJb SINE Alu -1 311 1 3970 184 76 97 chr15 62241366 62241872 -39138649 - L1MA10 LINE L1 -1003 5331 4816 198 0 0 0 chr15 62241872 62241894 -39138627 + (TAA)n Simple_repeat Simple_repeat 3 24 0 3970 184 76 97 chr15 62241894 62241980 -39138541 - L1MA10 LINE L1 -1518 4816 4730 2140 121 0 14 chr15 62241980 62242269 -39138252 - AluSx SINE Alu -27 285 1 3970 184 76 97 chr15 62242269 62242851 -39137670 - L1MA10 LINE L1 -1604 4730 4137 832 182 8 0 chr15 62242851 62242983 -39137538 - FLAM_A SINE Alu 0 133 1 3970 184 76 97 chr15 62242983 62243231 -39137290 - L1MA10 LINE L1 -2197 4137 3814 1951 154 10 6 chr15 62243231 62243542 -39136979 + AluSx SINE Alu 1 312 0 3970 184 76 97 chr15 62243542 62243682 -39136839 - L1MA10 LINE L1 -2520 3814 3673 650 264 203 15 chr15 62243689 62243892 -39136629 + L2 LINE L2 2922 3086 -227 2418 79 3 7 chr15 62243892 62244195 -39136326 - AluSp SINE Alu -11 302 1 2297 108 0 13 chr15 62244195 62244501 -39136020 - AluSx SINE Alu -10 302 1 650 264 203 15 chr15 62244501 62244626 -39135895 + L2 LINE L2 3085 3313 0 439 286 235 5 chr15 62244630 62244843 -39135678 - MIR SINE MIR 0 262 1 243 287 32 127 chr15 62244843 62244998 -39135523 + MIR3 SINE MIR 11 150 -58 1833 153 3 7 chr15 62245124 62245418 -39135103 + AluJb SINE Alu 1 293 -19 237 254 27 55 chr15 62246139 62246249 -39134272 + L1MC5 LINE L1 7822 7928 -33 26 30 0 0 chr15 62246249 62246282 -39134239 + AT_rich Low_complexity Low_complexity 1 33 0 2120 129 0 3 chr15 62246352 62246646 -39133875 - AluSx SINE Alu -14 298 6 201 162 0 0 chr15 62246651 62246688 -39133833 + A-rich Low_complexity Low_complexity 1 37 0 543 234 54 35 chr15 62246699 62246927 -39133594 + L1MC4a LINE L1 5192 5432 -743 2399 250 110 75 chr15 62246943 62247121 -39133400 + L1MC4a LINE L1 5667 4468 -1700 1586 190 15 0 chr15 62247121 62247389 -39133132 + AluJb SINE Alu 37 308 -4 2399 250 110 75 chr15 62247389 62248799 -39131722 + L1MC4a LINE L1 4467 5827 -341 329 207 141 59 chr15 62248855 62248990 -39131531 + L1MC4a LINE L1 6079 6224 -1584 423 252 215 16 chr15 62249043 62249542 -39130979 + L1MC4 LINE L1 7281 8009 -33 577 307 48 22 chr15 62250233 62250464 -39130057 + MIR SINE MIR 26 262 0 801 193 0 15 chr15 62251266 62251401 -39129120 + FLAM_A SINE Alu 1 133 0 2091 107 31 7 chr15 62251750 62252039 -39128482 + AluSc SINE Alu 1 296 -13 387 235 56 56 chr15 62252206 62252275 -39128246 - L1MC5 LINE L1 -48 7913 7845 1888 131 64 0 chr15 62252275 62252558 -39127963 - AluJb SINE Alu -11 301 1 387 235 56 56 chr15 62252558 62252650 -39127871 - L1MC5 LINE L1 -115 7846 7752 2259 81 7 0 chr15 62253616 62253899 -39126622 + AluSp SINE Alu 3 287 -26 22 0 0 0 chr15 62253926 62253948 -39126573 + AT_rich Low_complexity Low_complexity 1 22 0 659 78 165 19 chr15 62254075 62254178 -39126343 - AluJb SINE Alu -4 308 191 1741 234 214 26 chr15 62254188 62254682 -39125839 - L2 LINE L2 -16 3297 2898 1446 168 40 40 chr15 62254682 62254979 -39125542 + AluJo SINE Alu 1 297 -15 225 0 0 0 chr15 62254982 62255007 -39125514 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1741 234 214 26 chr15 62255007 62255453 -39125068 - L2 LINE L2 -416 2897 2171 2264 107 3 3 chr15 62256759 62257067 -39123454 - AluSx SINE Alu -4 308 1 377 134 15 0 chr15 62257079 62257146 -39123375 + MER3 DNA MER1_type 137 204 -5 1793 160 17 0 chr15 62257707 62258001 -39122520 + AluJb SINE Alu 1 299 -13 273 241 121 26 chr15 62258542 62258658 -39121863 + MIR SINE MIR 23 149 -59 25 0 0 0 chr15 62258904 62258929 -39121592 + GC_rich Low_complexity Low_complexity 1 25 0 1358 146 110 4 chr15 62259398 62259688 -39120833 - AluJo SINE Alu 0 317 1 652 289 48 32 chr15 62259771 62260020 -39120501 - MIR SINE MIR -1 261 9 215 297 0 0 chr15 62260020 62260084 -39120437 - MIR SINE MIR -80 182 119 2180 106 26 7 chr15 62260351 62260653 -39119868 - AluSx SINE Alu -4 308 1 2168 113 0 3 chr15 62260920 62261220 -39119301 - AluSx SINE Alu -13 299 1 1921 127 55 0 chr15 62264130 62264421 -39116100 - AluJb SINE Alu -5 307 1 1336 78 0 0 chr15 62264421 62264587 -39115934 - LTR43 LTR ERV1 -436 166 1 1159 158 20 69 chr15 62264587 62264685 -39115836 - L1M4 LINE L1 -427 5757 5656 2184 115 3 0 chr15 62264685 62264981 -39115540 + AluSx SINE Alu 2 298 -14 1159 158 20 69 chr15 62264981 62265042 -39115479 - L1M4 LINE L1 -528 5656 5594 2329 64 0 3 chr15 62265042 62265357 -39115164 - AluY SINE Alu 0 314 1 1159 158 20 69 chr15 62265357 62265441 -39115080 - L1M4 LINE L1 -590 5594 5524 2369 94 0 22 chr15 62266090 62266409 -39114112 - AluSx SINE Alu 0 312 1 1616 174 51 7 chr15 62266584 62266877 -39113644 + AluJo SINE Alu 1 306 -6 2275 103 3 10 chr15 62267681 62267991 -39112530 - AluSx SINE Alu -4 308 1 1787 147 33 0 chr15 62268006 62268279 -39112242 - AluJb SINE Alu -26 286 5 364 218 0 0 chr15 62268285 62268363 -39112158 - L1ME LINE L1 -392 5729 5652 312 203 0 58 chr15 62269065 62269134 -39111387 - MIR SINE MIR -103 105 41 266 221 13 78 chr15 62269263 62269340 -39111181 - MLT1J LTR MaLR -103 408 337 2125 120 7 0 chr15 62269350 62269642 -39110879 - AluSx SINE Alu -18 294 1 892 183 36 94 chr15 62269645 62269792 -39110729 - MER58A DNA MER1_type -2209 211 57 189 0 0 0 chr15 62269792 62269813 -39110708 + (TTA)n Simple_repeat Simple_repeat 2 22 0 892 183 36 94 chr15 62269813 62269860 -39110661 - MER58A DNA MER1_type -2363 57 29 2269 99 0 0 chr15 62269860 62270152 -39110369 + AluSc SINE Alu 1 292 -17 892 183 36 94 chr15 62270152 62270180 -39110341 - MER58A DNA MER1_type -2391 29 1 1224 167 101 8 chr15 62270279 62270537 -39109984 + L1ME3A LINE L1 5773 6054 -116 375 162 14 95 chr15 62270537 62270611 -39109910 - Alu SINE Alu -1 301 235 344 193 114 70 chr15 62270611 62270725 -39109796 + L1ME3A LINE L1 6044 6162 -8 258 210 136 12 chr15 62270766 62270847 -39109674 - MLT1J LTR MaLR -316 195 105 22 0 0 0 chr15 62270851 62270873 -39109648 + AT_rich Low_complexity Low_complexity 1 22 0 2130 104 31 0 chr15 62270873 62271160 -39109361 - AluSg SINE Alu -14 296 1 432 198 35 35 chr15 62271160 62271276 -39109245 - MLT1J LTR MaLR -395 116 1 382 284 209 13 chr15 62271496 62271735 -39108786 + MLT1J LTR MaLR 224 509 -2 256 281 24 37 chr15 62271736 62271818 -39108703 - L2 LINE L2 -223 3049 2969 312 200 189 33 chr15 62272047 62272137 -39108384 + L2 LINE L2 3136 3239 -33 580 304 83 30 chr15 62272428 62272790 -39107731 + MLT1K LTR MaLR 187 567 -21 1592 277 95 22 chr15 62272800 62273229 -39107292 + L2 LINE L2 2520 2916 -397 2256 92 0 0 chr15 62273229 62273536 -39106985 - AluSx SINE Alu 0 307 1 1592 277 95 22 chr15 62273536 62273830 -39106691 + L2 LINE L2 2916 3313 0 2318 108 0 0 chr15 62274023 62274328 -39106193 + AluY SINE Alu 1 305 -6 508 231 15 8 chr15 62275255 62275389 -39105132 + L1MC3 LINE L1 7491 7625 -160 2222 103 0 7 chr15 62275453 62275587 -39104934 + AluSq SINE Alu 1 134 -179 2204 109 0 3 chr15 62275587 62275890 -39104631 + AluSq SINE Alu 1 302 -11 2222 103 0 7 chr15 62275890 62276056 -39104465 + AluSq SINE Alu 134 299 -14 1985 152 0 0 chr15 62276200 62276503 -39104018 + AluJb SINE Alu 1 303 -9 330 320 30 0 chr15 62276512 62276612 -39103909 - L1ME LINE L1 -413 5708 5606 219 243 14 14 chr15 62276617 62276644 -39103877 + (CATA)n Simple_repeat Simple_repeat 2 28 -47 1911 116 76 0 chr15 62276644 62276919 -39103602 + AluSq SINE Alu 1 296 -17 219 243 14 14 chr15 62276919 62276965 -39103556 + (CATA)n Simple_repeat Simple_repeat 27 75 0 329 321 88 0 chr15 62277157 62277294 -39103227 - MER117 DNA MER1_type -48 149 1 620 77 11 0 chr15 62277316 62277407 -39103114 + (TAGA)n Simple_repeat Simple_repeat 1 92 0 2033 119 6 13 chr15 62277466 62277777 -39102744 + AluSx SINE Alu 1 309 -3 2400 84 0 3 chr15 62278296 62278606 -39101915 + AluSx SINE Alu 1 309 -3 274 219 31 0 chr15 62278613 62278709 -39101812 + Charlie5 DNA MER1_type 2487 2585 -27 192 77 0 0 chr15 62278897 62278923 -39101598 + (A)n Simple_repeat Simple_repeat 1 26 0 1126 261 76 39 chr15 62279874 62280284 -39100237 - L2 LINE L2 0 3313 2889 2141 126 10 0 chr15 62280368 62280713 -39099808 - AluSx SINE Alu 0 348 1 212 369 68 0 chr15 62280798 62280901 -39099620 + L2 LINE L2 3073 3182 -90 212 0 36 0 chr15 62281337 62281365 -39099156 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 257 351 23 23 chr15 62281681 62281855 -39098666 - L2 LINE L2 -559 2755 2582 214 328 172 23 chr15 62281888 62281969 -39098552 + MIR SINE MIR 1 69 -193 2132 108 27 0 chr15 62281969 62282266 -39098255 - AluSx SINE Alu -7 305 1 214 328 172 23 chr15 62282266 62282358 -39098163 + MIR SINE MIR 69 200 -62 210 143 0 0 chr15 62282835 62282870 -39097651 + (T)n Simple_repeat Simple_repeat 1 35 0 222 333 50 8 chr15 62283024 62283141 -39097380 + MIR SINE MIR 20 145 -63 687 302 53 12 chr15 62284856 62285101 -39095420 + MIR SINE MIR 2 256 -6 184 309 134 21 chr15 62286011 62286108 -39094413 - L3 LINE CR1 -131 1446 1339 279 400 115 37 chr15 62286256 62286716 -39093805 - L3 LINE CR1 -1071 506 11 2077 121 3 0 chr15 62287559 62287864 -39092657 + AluSg SINE Alu 1 306 -4 309 284 14 0 chr15 62288726 62288800 -39091721 - MIR SINE MIR -55 153 79 320 250 40 10 chr15 62289548 62289648 -39090873 + MIR SINE MIR 43 145 -63 272 237 53 26 chr15 62289657 62289733 -39090788 - MIR SINE MIR -1 261 184 815 174 42 11 chr15 62289876 62290066 -39090455 - L1MD3 LINE L1 -13 7982 7787 324 303 98 8 chr15 62290713 62290835 -39089686 - MIR SINE MIR -83 179 47 224 261 72 14 chr15 62290981 62291050 -39089471 - MIR3 SINE MIR -24 184 112 1982 60 54 101 chr15 62291337 62291653 -39088868 + AluY SINE Alu 1 301 0 196 279 0 0 chr15 62291908 62291951 -39088570 - MIR SINE MIR -111 151 109 257 330 9 28 chr15 62292060 62292166 -39088355 + MIR SINE MIR 86 189 -73 415 137 11 21 chr15 62292737 62292832 -39087689 - MER53 DNA DNA -4 185 92 235 212 30 15 chr15 62293071 62293137 -39087384 + MIR SINE MIR 82 148 -60 765 269 64 28 chr15 62293770 62294019 -39086502 - MIR SINE MIR -3 259 2 2173 99 10 10 chr15 62294159 62294463 -39086058 - AluSx SINE Alu -8 304 1 399 361 101 18 chr15 62295577 62295854 -39084667 + HAL1 LINE L1 982 1281 -1226 1157 172 38 5 chr15 62295883 62296092 -39084429 + AluJo SINE Alu 79 294 -18 412 280 84 21 chr15 62298339 62298482 -39082039 + MIR3 SINE MIR 11 162 -46 336 240 60 10 chr15 62299073 62299173 -39081348 + MIR SINE MIR 36 140 -122 588 268 81 38 chr15 62299181 62299416 -39081105 + L3 LINE CR1 1326 1570 -7 212 262 16 16 chr15 62299570 62299631 -39080890 + MIR SINE MIR 82 142 -66 1200 187 0 14 chr15 62299632 62299851 -39080670 + AluJb SINE Alu 81 296 -16 215 250 94 0 chr15 62300140 62300204 -39080317 + L2 LINE L2 3242 3311 -2 417 299 124 28 chr15 62300380 62300557 -39079964 - MIR3 SINE MIR 0 208 15 180 326 200 0 chr15 62300735 62300830 -39079691 - L2 LINE L2 -19 3253 3140 205 226 0 2 chr15 62301536 62301582 -39078939 + MIR SINE MIR 110 155 -53 303 244 23 23 chr15 62302112 62302198 -39078323 + MIR3 SINE MIR 95 180 -28 210 258 91 0 chr15 62302327 62302393 -39078128 + MIR3 SINE MIR 122 193 -15 910 93 0 0 chr15 62302453 62302571 -39077950 + AluSq/x SINE Alu 30 147 -165 275 109 0 0 chr15 62302585 62302631 -39077890 + Alu SINE Alu 255 300 -1 531 269 86 38 chr15 62302685 62302711 -39077810 + MIR SINE MIR 8 31 -231 3236 139 62 6 chr15 62302711 62303209 -39077312 - MER1A DNA MER1_type -1 526 1 531 269 86 38 chr15 62303209 62303368 -39077153 + MIR SINE MIR 31 202 -60 378 192 164 0 chr15 62303370 62303474 -39077047 + MIR SINE MIR 142 262 0 193 297 81 81 chr15 62303614 62303762 -39076759 - MIR SINE MIR -93 169 22 262 297 0 0 chr15 62303820 62303894 -39076627 + MIR SINE MIR 49 122 -140 249 287 50 30 chr15 62303923 62303952 -39076569 - MIR SINE MIR -93 169 142 1963 137 0 10 chr15 62303952 62304266 -39076255 - AluSx SINE Alu -1 311 1 249 287 50 30 chr15 62304266 62304337 -39076184 - MIR SINE MIR -120 142 67 7528 121 78 106 chr15 62304409 62306155 -39074366 + pTR5 LTR ERV1 741 2438 0 1797 154 16 23 chr15 62309684 62309850 -39070671 - AluJo SINE Alu -9 303 138 2216 96 3 3 chr15 62309850 62310152 -39070369 - AluSp SINE Alu -11 302 1 1797 154 16 23 chr15 62310152 62310290 -39070231 - AluJo SINE Alu -174 138 1 931 192 67 116 chr15 62310308 62310729 -39069792 - LTR37B LTR ERV1 -59 409 10 182 370 74 15 chr15 62311027 62311162 -39069359 - MIR3 SINE MIR -55 153 11 343 264 72 40 chr15 62311569 62311694 -39068827 - MIR3 SINE MIR -76 132 4 1218 239 229 8 chr15 62312075 62312637 -39067884 + L2 LINE L2 2640 3305 -8 193 152 0 0 chr15 62312807 62312840 -39067681 - L2 LINE L2 -254 3059 3027 243 301 75 30 chr15 62313979 62314112 -39066409 + MIR SINE MIR 54 192 -70 283 234 65 0 chr15 62314269 62314346 -39066175 + MIR SINE MIR 20 101 -107 297 295 13 47 chr15 62314406 62314555 -39065966 - L2 LINE L2 -473 2841 2698 465 286 89 41 chr15 62314605 62315043 -39065478 + LTR33 LTR ERVL 15 512 -9 315 308 45 6 chr15 62315456 62315615 -39064906 + MIR SINE MIR 35 203 -59 570 278 62 10 chr15 62315638 62315847 -39064674 + MIR SINE MIR 8 227 -35 361 264 80 0 chr15 62316909 62317034 -39063487 - L2 LINE L2 0 3272 3138 293 261 42 17 chr15 62317220 62317339 -39063182 - LTR67 LTR ERVL -4 553 432 214 273 18 73 chr15 62318178 62318288 -39062233 + L2 LINE L2 3169 3272 0 1050 111 74 37 chr15 62319411 62319507 -39061014 + MLT1D LTR MaLR 1 92 -413 2135 92 53 0 chr15 62319507 62319790 -39060731 - AluSx SINE Alu -14 298 1 1050 111 74 37 chr15 62319790 62319882 -39060639 + MLT1D LTR MaLR 92 196 -309 574 317 106 18 chr15 62320478 62320705 -39059816 - MIR SINE MIR -10 252 6 305 229 208 0 chr15 62320751 62320847 -39059674 - FRAM SINE Alu -3 163 48 2240 92 3 0 chr15 62320857 62321150 -39059371 - AluSx SINE Alu -18 294 1 248 302 47 70 chr15 62322026 62322155 -39058366 + MER5A DNA MER1_type 40 165 -24 273 315 210 7 chr15 62322162 62322305 -39058216 - MIR3 SINE MIR -20 188 17 374 204 54 84 chr15 62322356 62322523 -39057998 - HAL1 LINE L1 0 2507 2346 2149 105 0 10 chr15 62323331 62323627 -39056894 + AluSx SINE Alu 1 293 -19 463 260 62 89 chr15 62324801 62325111 -39055410 + L2 LINE L2 2995 3271 -1 251 219 0 0 chr15 62325113 62325154 -39055367 - L2 LINE L2 -96 3176 3136 281 316 0 0 chr15 62325515 62325591 -39054930 - MIR SINE MIR -55 153 78 927 211 6 17 chr15 62325773 62325953 -39054568 - MER5B DNA MER1_type 0 178 1 230 342 43 17 chr15 62325989 62326106 -39054415 - MER5A DNA MER1_type -18 171 52 448 267 222 6 chr15 62327064 62327244 -39053277 + MIR SINE MIR 36 254 -8 336 323 69 22 chr15 62327758 62327990 -39052531 + L2 LINE L2 2811 3053 -219 896 260 141 23 chr15 62328005 62328459 -39052062 + MLT1H LTR MaLR 1 549 0 960 238 82 0 chr15 62328758 62329002 -39051519 + LTR16A LTR ERVL 53 316 -134 229 272 22 54 chr15 62329433 62329525 -39050996 + MIR SINE MIR 109 197 -65 2285 110 3 3 chr15 62329531 62329840 -39050681 + AluSq SINE Alu 1 309 -4 250 300 56 11 chr15 62329867 62329957 -39050564 - MIR SINE MIR -94 168 75 333 260 104 0 chr15 62330407 62330503 -39050018 + MIR SINE MIR 84 189 -73 231 221 91 39 chr15 62330649 62330726 -39049795 - MIR SINE MIR -95 113 33 678 215 51 6 chr15 62330839 62330997 -39049524 - MER69A DNA AcHobo -11 166 2 377 302 74 13 chr15 62331266 62331415 -39049106 - L2 LINE L2 -1 3271 3114 33 56 0 0 chr15 62331726 62331780 -39048741 + GC_rich Low_complexity Low_complexity 1 54 0 234 323 68 8 chr15 62332744 62332877 -39047644 - MIR SINE MIR -61 201 61 265 303 26 0 chr15 62333250 62333326 -39047195 + L2 LINE L2 3192 3269 -3 2073 126 9 28 chr15 62333542 62333859 -39046662 + AluSx SINE Alu 1 311 -1 265 62 42 0 chr15 62333859 62333907 -39046614 + (GA)n Simple_repeat Simple_repeat 1 50 0 513 327 77 16 chr15 62333918 62334166 -39046355 + L1M4 LINE L1 4656 4918 -1228 1637 151 39 11 chr15 62334167 62334295 -39046226 + AluJo SINE Alu 1 124 -188 2368 104 0 3 chr15 62334295 62334603 -39045918 + AluSc SINE Alu 1 307 -2 1637 151 39 11 chr15 62334603 62334759 -39045762 + AluJo SINE Alu 124 293 -19 1822 162 0 26 chr15 62334762 62335065 -39045456 + AluJb SINE Alu 1 295 -17 1515 123 0 5 chr15 62335370 62335573 -39044948 - AluSc SINE Alu -21 288 87 603 268 112 30 chr15 62336107 62336207 -39044314 + L1ME LINE L1 3552 3642 -2504 2362 109 0 0 chr15 62336207 62336510 -39044011 - AluSx SINE Alu -9 303 1 603 268 112 30 chr15 62336510 62336838 -39043683 + L1ME LINE L1 3642 4015 -2131 481 182 11 0 chr15 62336845 62336933 -39043588 + AluSc SINE Alu 221 309 0 2278 107 0 25 chr15 62337018 62337336 -39043185 + AluSq SINE Alu 1 310 -3 1761 224 104 67 chr15 62337371 62338032 -39042489 + L1ME LINE L1 4415 5050 -1112 1574 163 12 53 chr15 62338032 62338378 -39042143 + AluJb SINE Alu 1 312 0 1761 224 104 67 chr15 62338378 62338445 -39042076 + L1ME LINE L1 5050 5113 -1049 2389 116 0 0 chr15 62338445 62338755 -39041766 + AluSx SINE Alu 2 311 -1 1761 224 104 67 chr15 62338755 62338772 -39041749 + L1ME LINE L1 5113 5128 -1034 2632 56 3 0 chr15 62338772 62339075 -39041446 + AluY SINE Alu 1 304 -7 1761 224 104 67 chr15 62339075 62339462 -39041059 + L1ME LINE L1 5128 5563 -599 248 170 0 0 chr15 62339508 62339555 -39040966 + U2 snRNA snRNA 1 47 -141 2388 71 0 0 chr15 62339648 62339963 -39040558 + AluSc SINE Alu 1 315 0 2366 88 0 22 chr15 62339965 62340282 -39040239 + AluSx SINE Alu 1 310 -2 2160 124 0 10 chr15 62341055 62341354 -39039167 - AluSx SINE Alu -16 296 1 1209 105 0 0 chr15 62341362 62341524 -39038997 - AluY SINE Alu -14 297 136 919 288 170 55 chr15 62342164 62342658 -39037863 + L2 LINE L2 2164 2600 -672 885 150 0 0 chr15 62342658 62342791 -39037730 + FLAM_C SINE Alu 1 133 0 919 288 170 55 chr15 62342791 62343036 -39037485 + L2 LINE L2 2600 2815 -457 2104 136 0 0 chr15 62343036 62343348 -39037173 + AluSx SINE Alu 2 313 0 919 288 170 55 chr15 62343348 62343426 -39037095 + L2 LINE L2 2815 3073 -199 2266 110 3 0 chr15 62343453 62343753 -39036768 - AluSg SINE Alu -9 301 1 324 299 120 18 chr15 62344092 62344259 -39036262 + L2 LINE L2 3115 3298 -15 789 189 49 53 chr15 62345005 62345249 -39035272 + L1MC5 LINE L1 7108 7350 -611 354 189 95 0 chr15 62345273 62345347 -39035174 - MER33 DNA MER1_type -243 81 1 1279 190 88 32 chr15 62345352 62345792 -39034729 + L1MC5 LINE L1 7337 7931 -30 2382 109 0 6 chr15 62345979 62346292 -39034229 - AluSx SINE Alu -1 311 1 22 43 0 21 chr15 62347073 62347099 -39033422 + AT_rich Low_complexity Low_complexity 1 27 -19 2357 72 0 16 chr15 62347099 62347404 -39033117 - AluY SINE Alu -11 300 1 22 43 0 21 chr15 62347404 62347424 -39033097 + AT_rich Low_complexity Low_complexity 27 46 0 281 167 0 0 chr15 62348636 62348684 -39031837 - MER82 DNA MER2_type -1 652 605 189 287 205 8 chr15 62348690 62348812 -39031709 + MIR SINE MIR 93 238 -24 227 215 15 31 chr15 62349335 62349400 -39031121 + CT-rich Low_complexity Low_complexity 4 67 0 1505 161 0 79 chr15 62349548 62349714 -39030807 - AluJo SINE Alu -10 302 124 1857 169 13 7 chr15 62349714 62350021 -39030500 - AluJb SINE Alu -3 309 1 1505 161 0 79 chr15 62350021 62350056 -39030465 - AluJo SINE Alu -188 124 88 1964 80 0 0 chr15 62350056 62350295 -39030226 + AluY SINE Alu 61 299 -12 1505 161 0 79 chr15 62350295 62350383 -39030138 - AluJo SINE Alu -224 88 35 2367 91 16 7 chr15 62350615 62350922 -39029599 - AluSp SINE Alu -3 310 1 194 188 29 87 chr15 62350927 62350996 -39029525 + L2 LINE L2 3163 3227 -86 232 194 194 0 chr15 62351156 62351218 -39029303 - MER81 DNA DNA 0 114 41 282 150 0 33 chr15 62351308 62351368 -39029153 + L1MC5 LINE L1 7631 7688 -273 309 199 84 136 chr15 62351571 62351622 -39028899 - L1ME4a LINE L1 -10 6111 6059 2095 138 0 16 chr15 62351622 62351933 -39028588 + AluSx SINE Alu 1 306 -6 309 199 84 136 chr15 62351933 62352072 -39028449 - L1ME4a LINE L1 -62 6059 5931 295 322 81 46 chr15 62352113 62352295 -39028226 - L1ME4a LINE L1 -297 5824 5629 2374 83 20 0 chr15 62352295 62352595 -39027926 + AluSq SINE Alu 1 306 -7 295 322 81 46 chr15 62352595 62352673 -39027848 - L1ME4a LINE L1 -492 5629 5555 200 255 0 0 chr15 62352694 62352741 -39027780 + L2 LINE L2 3267 3313 0 2337 107 0 0 chr15 62352755 62353055 -39027466 - AluSc SINE Alu -9 300 1 344 172 0 0 chr15 62353490 62353548 -39026973 - MER58B DNA MER1_type -37 304 247 2398 104 0 9 chr15 62353709 62354025 -39026496 + AluSq SINE Alu 1 313 0 618 338 85 34 chr15 62354491 62355163 -39025358 + L2 LINE L2 1237 1942 -1372 882 181 18 6 chr15 62355179 62355350 -39025171 - MIR SINE MIR 0 262 90 2678 98 22 3 chr15 62355350 62355707 -39024814 - THE1B LTR MaLR 0 364 1 314 286 48 65 chr15 62355938 62356041 -39024480 + L2 LINE L2 2314 2414 -900 2061 171 0 0 chr15 62356041 62356351 -39024170 + AluJo SINE Alu 1 310 -2 314 286 48 65 chr15 62356351 62356415 -39024106 + L2 LINE L2 2414 2478 -836 2897 16 0 0 chr15 62356745 62357054 -39023467 + AluYb8 SINE Alu 1 309 -9 226 369 106 20 chr15 62357837 62358035 -39022486 - L2 LINE L2 -191 3081 2867 263 180 140 90 chr15 62359004 62359104 -39021417 + MER5A DNA MER1_type 1 105 -84 359 252 46 15 chr15 62359208 62359339 -39021182 - L3 LINE CR1 -294 1283 1149 629 268 21 7 chr15 62359342 62359484 -39021037 + FRAM SINE Alu 1 143 -33 534 78 0 0 chr15 62359485 62359562 -39020959 - AluJb SINE Alu -4 308 232 1041 118 20 13 chr15 62359563 62359715 -39020806 - AluJb SINE Alu -159 153 1 2303 83 17 3 chr15 62359724 62360026 -39020495 - AluSq SINE Alu -7 306 1 22 0 0 0 chr15 62360047 62360069 -39020452 + AT_rich Low_complexity Low_complexity 1 22 0 1175 135 0 0 chr15 62360264 62360427 -39020094 + AluSg/x SINE Alu 135 297 -15 2666 111 17 12 chr15 62360572 62360979 -39019542 + MER1A DNA MER1_type 1 409 -120 2449 86 3 3 chr15 62361036 62361339 -39019182 + AluSp SINE Alu 1 303 -10 560 275 62 6 chr15 62361410 62361588 -39018933 + MIR SINE MIR 31 218 -44 258 289 0 0 chr15 62361611 62361701 -39018820 + L1MC4 LINE L1 6614 6703 -1339 657 71 0 0 chr15 62361850 62361934 -39018587 - AluSg1 SINE Alu -9 303 220 1545 54 0 0 chr15 62361934 62362119 -39018402 - AluSg1 SINE Alu -124 185 1 202 313 7 7 chr15 62362964 62363108 -39017413 + (CGG)n Simple_repeat Simple_repeat 1 144 0 191 313 104 43 chr15 62363505 62363620 -39016901 - L2 LINE L2 -2 3270 3149 232 237 136 34 chr15 62363657 62363775 -39016746 - L2 LINE L2 -213 3059 2930 251 148 131 0 chr15 62363822 62363883 -39016638 + LTR36 LTR ERV1 53 121 -490 432 68 0 17 chr15 62363887 62363946 -39016575 + Alu SINE Alu 5 62 -251 812 147 22 7 chr15 62363947 62364083 -39016438 + AluJb SINE Alu 156 293 -19 397 189 150 121 chr15 62364085 62364391 -39016130 + LTR36 LTR ERV1 114 428 -183 1608 181 7 17 chr15 62364414 62364706 -39015815 - AluSx SINE Alu -23 289 1 1970 120 21 3 chr15 62364721 62365004 -39015517 - AluY SINE Alu -20 291 4 276 215 38 0 chr15 62365008 62365087 -39015434 + LTR36 LTR ERV1 530 611 0 2033 119 4 0 chr15 62365128 62365405 -39015116 + AluSx SINE Alu 21 298 -14 2113 108 14 0 chr15 62365505 62365804 -39014717 - AluSp SINE Alu 0 305 3 775 120 30 15 chr15 62365862 62365995 -39014526 - L1MD1 LINE L1 0 6242 6108 3283 121 32 2 chr15 62365995 62366498 -39014023 + MER41C LTR ERV1 1 518 -36 912 69 0 0 chr15 62366498 62366614 -39013907 - THE1B LTR MaLR 0 364 249 262 105 0 0 chr15 62366618 62366656 -39013865 - Alu SINE Alu -263 38 1 6419 83 6 0 chr15 62366656 62367512 -39013009 - THE1B-int LTR MaLR -719 861 1 2522 108 11 24 chr15 62367512 62367881 -39012640 - THE1B LTR MaLR 0 364 1 292 98 0 0 chr15 62367881 62367922 -39012599 + MER41B LTR ERV1 595 635 0 1488 130 33 76 chr15 62367932 62367988 -39012533 - MER4A LTR ERV1 0 664 607 1995 119 26 55 chr15 62367988 62368299 -39012222 + AluSg SINE Alu 1 302 -8 1488 130 33 76 chr15 62368299 62368603 -39011918 - MER4A LTR ERV1 -57 607 261 441 146 101 0 chr15 62368603 62368692 -39011829 - MER4A LTR ERV1 -566 98 1 * 1170 257 58 74 chr15 62368690 62368715 -39011806 + LTR26 LTR ERV1 1 25 -578 3098 109 13 18 chr15 62368715 62369164 -39011357 + MER83 LTR ERV1 1 447 -1 1170 257 58 74 chr15 62369164 62369507 -39011014 + LTR26 LTR ERV1 25 372 -231 2288 117 3 3 chr15 62369507 62369815 -39010706 - AluSq SINE Alu -5 308 1 1826 141 84 34 chr15 62369815 62370170 -39010351 - THE1C LTR MaLR -2 373 1 1170 257 58 74 chr15 62370170 62370329 -39010192 + LTR26 LTR ERV1 370 522 -81 24 0 0 0 chr15 62370356 62370380 -39010141 + AT_rich Low_complexity Low_complexity 1 24 0 272 200 89 67 chr15 62370388 62370478 -39010043 + LTR26 LTR ERV1 512 603 0 473 206 156 0 chr15 62370479 62370620 -39009901 - L1MD1 LINE L1 -132 6110 5948 2098 117 3 7 chr15 62370620 62370941 -39009580 - AluSx SINE Alu 0 312 1 844 223 43 5 chr15 62370941 62371125 -39009396 - AluJo SINE Alu -121 191 1 717 166 20 70 chr15 62371133 62371291 -39009230 - L1M4 LINE L1 -966 5180 5016 2176 103 7 20 chr15 62371291 62371454 -39009067 - AluSx SINE Alu -14 298 139 2575 65 7 0 chr15 62371454 62371761 -39008760 - AluSx SINE Alu -3 309 1 2176 103 7 20 chr15 62371761 62371899 -39008622 - AluSx SINE Alu -173 139 1 2344 73 17 0 chr15 62371901 62372188 -39008333 - AluSp SINE Alu -21 292 1 1784 122 50 21 chr15 62372188 62372467 -39008054 - AluSx SINE Alu -25 287 1 717 166 20 70 chr15 62372467 62372503 -39008018 - L1M4 LINE L1 -1129 5017 4992 711 203 0 36 chr15 62372506 62372644 -39007877 - FLAM_A SINE Alu 0 133 1 2277 89 3 0 chr15 62372956 62373275 -39007246 - AluSp SINE Alu 0 320 1 1937 83 105 11 chr15 62373294 62373571 -39006950 - AluSg SINE Alu -7 303 1 825 126 0 0 chr15 62373599 62373710 -39006811 - AluSg/x SINE Alu -20 290 180 1531 154 68 19 chr15 62373718 62373984 -39006537 - AluJb SINE Alu -33 279 1 2233 73 33 0 chr15 62374057 62374366 -39006155 + AluSp SINE Alu 1 318 0 1896 134 25 4 chr15 62374374 62374649 -39005872 - AluJo SINE Alu -26 286 6 984 87 81 13 chr15 62374687 62374857 -39005664 + L1PA8 LINE L1 5999 6172 0 590 244 83 19 chr15 62374896 62375052 -39005469 + MIR SINE MIR 28 193 -69 52 30 0 0 chr15 62375137 62375203 -39005318 + AT_rich Low_complexity Low_complexity 1 66 0 2497 49 0 33 chr15 62375206 62375510 -39005011 + AluY SINE Alu 2 295 -16 1109 78 6 0 chr15 62375518 62375697 -39004824 + (TA)n Simple_repeat Simple_repeat 1 180 0 196 296 74 0 chr15 62375916 62375970 -39004551 + L2 LINE L2 2720 2777 -537 730 191 29 7 chr15 62375974 62376110 -39004411 + FRAM SINE Alu 1 139 -37 392 249 239 15 chr15 62376155 62376352 -39004169 - L2 LINE L2 -1495 1819 1579 180 294 59 29 chr15 62376401 62376503 -39004018 + L2 LINE L2 2699 2803 -511 2235 116 0 3 chr15 62376509 62376810 -39003711 - AluSq SINE Alu -13 300 1 227 366 62 0 chr15 62376826 62376938 -39003583 - L2 LINE L2 -15 3257 3139 * 286 259 166 58 chr15 62376923 62377266 -39003255 - L2 LINE L2 -1572 1742 1363 1977 132 17 3 chr15 62378766 62379061 -39001460 + AluSx SINE Alu 1 299 -13 2258 100 10 7 chr15 62379149 62379450 -39001071 + AluSg SINE Alu 1 302 -8 2250 91 0 20 chr15 62379630 62379928 -39000593 - AluSg SINE Alu -18 292 1 2351 109 0 0 chr15 62380632 62380936 -38999585 + AluSx SINE Alu 1 304 -8 216 0 0 0 chr15 62381026 62381050 -38999471 + (A)n Simple_repeat Simple_repeat 1 24 0 2406 84 0 3 chr15 62381499 62381797 -38998724 - AluSc SINE Alu -12 297 1 24 32 0 0 chr15 62381893 62381924 -38998597 + AT_rich Low_complexity Low_complexity 1 31 0 313 65 16 48 chr15 62382222 62382284 -38998237 + (TA)n Simple_repeat Simple_repeat 2 61 0 1187 144 0 6 chr15 62382293 62382466 -38998055 - AluSx SINE Alu -140 172 1 246 32 0 0 chr15 62382470 62382501 -38998020 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 695 116 36 18 chr15 62382503 62382615 -38997906 - FLAM_C SINE Alu -16 117 4 1819 128 0 23 chr15 62382737 62382995 -38997526 + AluSx SINE Alu 1 252 -60 247 343 118 59 chr15 62383433 62383637 -38996884 - L2 LINE L2 -16 3256 3041 235 284 0 15 chr15 62383605 62383672 -38996849 - L2 LINE L2 -546 2768 2703 * 581 270 27 5 chr15 62384699 62384884 -38995637 - MIR SINE MIR -44 218 30 1713 96 13 9 chr15 62384884 62385114 -38995407 - AluSq SINE Alu -78 235 5 1718 159 43 0 chr15 62387612 62387888 -38992633 - AluJo SINE Alu -21 291 4 303 309 32 24 chr15 62388604 62388730 -38991791 + MIR SINE MIR 16 142 -66 1803 100 4 0 chr15 62388952 62389232 -38991289 + AluSx SINE Alu 55 335 0 2407 103 0 0 chr15 62389371 62389682 -38990839 - AluSx SINE Alu -1 311 1 288 0 0 0 chr15 62390162 62390194 -38990327 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 315 0 0 0 chr15 62390193 62390228 -38990293 + (CA)n Simple_repeat Simple_repeat 1 35 0 685 208 38 19 chr15 62390519 62390678 -38989843 + MIR SINE MIR 73 234 -28 23 54 0 0 chr15 62391252 62391289 -38989232 + AT_rich Low_complexity Low_complexity 1 37 0 386 177 6 24 chr15 62392606 62392685 -38987836 + AluS SINE Alu 1 61 -247 612 161 125 0 chr15 62392685 62392797 -38987724 + AluJb SINE Alu 171 296 -16 1116 128 6 0 chr15 62393192 62393356 -38987165 - AluSx SINE Alu -147 165 1 426 196 105 15 chr15 62393359 62393492 -38987029 + MER112 DNA MER1_type 105 249 -11 21 36 0 0 chr15 62394325 62394353 -38986168 + AT_rich Low_complexity Low_complexity 1 28 0 860 144 0 8 chr15 62394353 62394485 -38986036 - FLAM_C SINE Alu -2 131 1 1737 156 32 3 chr15 62394625 62394907 -38985614 + AluJb SINE Alu 2 291 -21 2605 45 0 22 chr15 62394945 62395259 -38985262 - AluY SINE Alu -4 307 1 2249 104 0 3 chr15 62396642 62396939 -38983582 - AluSc SINE Alu -13 296 1 2272 83 0 40 chr15 62397166 62397466 -38983055 + AluSx SINE Alu 4 291 -21 2412 79 16 0 chr15 62397677 62397980 -38982541 + AluY SINE Alu 1 308 -3 2766 51 0 0 chr15 62397996 62398328 -38982193 + L1PA5 LINE L1 5821 6152 -2 1374 158 0 4 chr15 62398415 62398643 -38981878 - AluJo SINE Alu -1 311 85 769 71 0 0 chr15 62398643 62398741 -38981780 - AluY SINE Alu -62 249 152 985 188 9 57 chr15 62398742 62398971 -38981550 - AluJb SINE Alu -94 218 1 1737 121 13 0 chr15 62399006 62399245 -38981276 + AluSx SINE Alu 1 242 -70 2241 96 3 20 chr15 62399328 62399629 -38980892 - AluSq SINE Alu -16 297 2 465 185 65 0 chr15 62399632 62399724 -38980797 - FLAM_A SINE Alu -16 126 29 2167 98 20 17 chr15 62400052 62400348 -38980173 + AluSq SINE Alu 1 297 -16 2332 110 0 3 chr15 62400380 62400690 -38979831 - AluSc SINE Alu 0 309 1 2055 145 0 0 chr15 62400734 62401030 -38979491 + AluSx SINE Alu 1 296 -16 1696 121 117 11 chr15 62401559 62401832 -38978689 - AluSg1 SINE Alu -7 302 1 692 117 28 0 chr15 62401942 62401956 -38978565 + L1MB7 LINE L1 5316 5328 -840 1758 126 11 11 chr15 62401956 62402226 -38978295 + AluSq SINE Alu 38 307 -6 692 117 28 0 chr15 62402226 62402334 -38978187 + L1MB7 LINE L1 5328 5441 -727 1400 172 102 4 chr15 62402353 62402609 -38977912 + AluJo SINE Alu 27 307 -5 3192 179 77 28 chr15 62402611 62402657 -38977864 + L1MB7 LINE L1 5432 5474 -710 2256 116 13 0 chr15 62402657 62402960 -38977561 + AluSx SINE Alu 1 307 -5 3192 179 77 28 chr15 62402960 62403545 -38976976 + L1MB7 LINE L1 5474 6029 -155 2168 94 7 14 chr15 62403545 62403842 -38976679 - AluY SINE Alu -16 295 1 2411 83 0 0 chr15 62403844 62404132 -38976389 - AluSg SINE Alu -22 288 1 3192 179 77 28 chr15 62404132 62404213 -38976308 + L1MB7 LINE L1 6029 6183 -1 865 241 132 5 chr15 62404236 62404448 -38976073 + MER8 DNA MER2_type 1 239 0 335 230 72 36 chr15 62404630 62404769 -38975752 + L1ME LINE L1 5288 5431 -731 2064 116 0 43 chr15 62404773 62405100 -38975421 + AluSq SINE Alu 1 313 0 1187 153 53 18 chr15 62405101 62405329 -38975192 - MER46A DNA MER2_type 0 236 1 300 283 25 33 chr15 62405748 62405868 -38974653 + MER5A DNA MER1_type 65 183 -6 249 254 63 0 chr15 62405982 62406045 -38974476 + MIR SINE MIR 80 146 -116 2326 106 3 0 chr15 62406152 62406463 -38974058 - AluSq SINE Alu 0 313 2 2114 122 0 10 chr15 62406643 62406938 -38973583 - AluSx SINE Alu -20 292 1 1667 178 37 0 chr15 62407365 62407663 -38972858 - AluJb SINE Alu -3 309 1 235 232 51 14 chr15 62408045 62408142 -38972379 + (TA)n Simple_repeat Simple_repeat 1 106 -37 1283 189 121 8 chr15 62408142 62408406 -38972115 - AluJb SINE Alu -18 294 1 235 232 51 14 chr15 62408406 62408446 -38972075 + (TA)n Simple_repeat Simple_repeat 106 143 0 2248 106 0 7 chr15 62410189 62410490 -38970031 + AluSx SINE Alu 1 299 -13 233 97 0 0 chr15 62410527 62410558 -38969963 + Alu SINE Alu 1 31 -268 1767 90 5 0 chr15 62410558 62410781 -38969740 + AluSg/x SINE Alu 72 295 -17 1088 168 111 8 chr15 62410789 62411033 -38969488 + L1MB2 LINE L1 5902 6170 -1 2078 118 14 0 chr15 62411040 62411366 -38969155 + AluSx SINE Alu 1 330 0 2108 134 13 0 chr15 62411411 62411718 -38968803 + AluY SINE Alu 1 311 0 1803 183 135 16 chr15 62411824 62412261 -38968260 - Charlie4a DNA MER1_type -2 506 18 1958 108 7 7 chr15 62412452 62412730 -38967791 + AluSx SINE Alu 3 280 -32 2635 55 3 0 chr15 62412750 62413176 -38967345 + AluY SINE Alu 1 427 0 349 261 135 0 chr15 62413333 62413444 -38967077 + L2 LINE L2 3172 3297 -16 209 191 0 24 chr15 62414923 62414965 -38965556 + C-rich Low_complexity Low_complexity 2 42 0 411 222 30 0 chr15 62415498 62415597 -38964924 + LTR33 LTR ERVL 319 420 -101 971 66 0 36 chr15 62415603 62415740 -38964781 - FLAM_C SINE Alu -1 132 1 277 287 74 25 chr15 62416035 62416157 -38964364 - MIR SINE MIR -61 147 20 2340 97 0 0 chr15 62416214 62416514 -38964007 + AluSx SINE Alu 1 300 -12 471 260 84 19 chr15 62416782 62416936 -38963585 - MIR SINE MIR -50 212 49 2226 98 17 0 chr15 62417117 62417414 -38963107 + AluSg SINE Alu 1 302 -8 270 282 77 0 chr15 62417425 62417503 -38963018 - MER5A DNA MER1_type -43 146 63 361 273 81 12 chr15 62417947 62418108 -38962413 + MIR SINE MIR 20 191 -71 21 36 0 0 chr15 62418213 62418241 -38962280 + AT_rich Low_complexity Low_complexity 1 28 0 186 71 0 0 chr15 62418256 62418284 -38962237 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 2493 77 3 0 chr15 62418521 62418831 -38961690 + AluY SINE Alu 1 311 0 1742 179 21 0 chr15 62419423 62419713 -38960808 + AluJo SINE Alu 1 296 -16 2081 130 3 20 chr15 62419912 62420211 -38960310 - AluJb SINE Alu -18 294 1 2545 63 0 0 chr15 62420220 62420521 -38960000 - AluY SINE Alu -10 301 1 722 99 144 0 chr15 62420521 62420632 -38959889 - AluSq/x SINE Alu -178 135 9 2234 84 0 0 chr15 62421027 62421314 -38959207 + AluY SINE Alu 1 287 -24 216 0 0 0 chr15 62421317 62421341 -38959180 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1356 95 0 0 chr15 62421342 62421521 -38959000 + AluSq SINE Alu 135 313 0 2527 66 0 19 chr15 62421565 62421882 -38958639 + AluY SINE Alu 1 311 0 2283 100 0 10 chr15 62422676 62422977 -38957544 + AluSx SINE Alu 1 298 -14 294 259 53 53 chr15 62423031 62423162 -38957359 + L2 LINE L2 2924 3054 -218 183 263 50 61 chr15 62427730 62427829 -38952692 - MIR SINE MIR -46 216 119 1905 243 97 30 chr15 62427847 62428079 -38952442 + MER20B DNA MER1_type 13 228 -555 2079 142 0 0 chr15 62428079 62428374 -38952147 + AluJb SINE Alu 1 295 -17 1905 243 97 30 chr15 62428374 62428864 -38951657 + MER20B DNA MER1_type 228 783 0 193 337 79 0 chr15 62429147 62429236 -38951285 + L2 LINE L2 2919 3014 -258 962 165 17 11 chr15 62429236 62429412 -38951109 + MER5B DNA MER1_type 1 177 -1 2389 112 0 0 chr15 62429528 62429840 -38950681 - AluSx SINE Alu 0 312 1 2187 120 17 0 chr15 62429990 62430289 -38950232 + AluSx SINE Alu 1 304 -8 226 49 0 0 chr15 62430391 62430432 -38950089 + Alu SINE Alu 261 301 0 400 309 5 86 chr15 62430855 62431065 -38949456 + MIR SINE MIR 20 212 -50 2370 108 0 0 chr15 62431114 62431411 -38949110 - AluSx SINE Alu -15 297 1 1994 159 0 3 chr15 62431518 62431820 -38948701 - AluJb SINE Alu -11 301 1 954 236 110 21 chr15 62432583 62432877 -38947644 - L2 LINE L2 -246 3067 2748 230 269 35 111 chr15 62433339 62433420 -38947101 + L2 LINE L2 2948 3012 -260 2152 123 0 0 chr15 62433420 62433725 -38946796 + AluSx SINE Alu 1 305 0 230 269 35 111 chr15 62433725 62433813 -38946708 + L2 LINE L2 3012 3105 -167 208 250 0 0 chr15 62433828 62433872 -38946649 + L2 LINE L2 3270 3313 0 516 246 87 8 chr15 62434251 62434377 -38946144 + MER91B DNA MER1_type 55 190 0 473 289 166 0 chr15 62434778 62434965 -38945556 + MIR SINE MIR 19 236 -26 549 258 124 22 chr15 62434969 62435194 -38945327 - MIR SINE MIR 0 262 15 275 368 26 13 chr15 62436068 62436220 -38944301 + L2 LINE L2 2809 2962 -310 532 238 157 29 chr15 62436530 62436740 -38943781 + MIR SINE MIR 14 250 -12 267 198 42 83 chr15 62436852 62436948 -38943573 + MIR SINE MIR 117 208 -54 * 843 249 47 34 chr15 62436941 62437174 -38943347 + MIR SINE MIR 19 254 -8 216 0 0 0 chr15 62437696 62437720 -38942801 + (T)n Simple_repeat Simple_repeat 1 24 0 949 167 86 0 chr15 62441026 62441200 -38939321 - MER5A DNA MER1_type 0 189 1 216 323 108 0 chr15 62441384 62441477 -38939044 - L2 LINE L2 -2 3270 3168 231 203 0 0 chr15 62441545 62441614 -38938907 + (TG)n Simple_repeat Simple_repeat 2 70 0 2172 124 3 0 chr15 62441660 62441959 -38938562 + AluSx SINE Alu 1 300 -12 232 268 169 56 chr15 62442283 62442425 -38938096 + MIR3 SINE MIR 34 191 -17 2018 150 30 33 chr15 62442442 62442809 -38937712 - MER47A DNA MER2_type 0 366 1 295 299 37 9 chr15 62444304 62444411 -38936110 - MIR SINE MIR -65 197 88 1297 249 91 27 chr15 62444670 62445119 -38935402 + MLT1H LTR MaLR 72 549 0 451 254 117 30 chr15 62445124 62445168 -38935353 - MLT1K LTR MaLR -6 582 543 2481 97 0 0 chr15 62445168 62445478 -38935043 - AluSx SINE Alu -2 310 1 451 254 117 30 chr15 62445478 62445629 -38934892 - MLT1K LTR MaLR -45 543 370 532 262 30 24 chr15 62445629 62445793 -38934728 + MLT1G1 LTR MaLR 1 165 -430 2394 91 3 0 chr15 62445798 62446096 -38934425 - AluSp SINE Alu -14 299 1 207 0 0 0 chr15 62446097 62446120 -38934401 + (T)n Simple_repeat Simple_repeat 1 23 0 1201 127 0 0 chr15 62446131 62446296 -38934225 + AluSg/x SINE Alu 132 296 -16 3038 172 53 77 chr15 62447850 62448268 -38932253 - L1ME1 LINE L1 -18 6148 5721 2149 117 7 7 chr15 62448268 62448576 -38931945 - AluSx SINE Alu -4 308 1 3038 172 53 77 chr15 62448576 62448600 -38931921 - L1ME1 LINE L1 -445 5721 5698 1902 140 17 17 chr15 62448600 62448900 -38931621 - AluSx SINE Alu -12 300 1 3038 172 53 77 chr15 62448900 62449320 -38931201 - L1ME1 LINE L1 -468 5698 5259 1785 137 15 11 chr15 62449320 62449590 -38930931 - AluJb SINE Alu -8 304 34 3038 172 53 77 chr15 62449590 62449784 -38930737 - L1ME1 LINE L1 -907 5259 5062 911 219 0 6 chr15 62449787 62449965 -38930556 - FRAM SINE Alu 0 176 1 489 186 6 169 chr15 62449965 62450066 -38930455 - L1ME1 LINE L1 -1090 5056 5014 1787 186 3 3 chr15 62450066 62450362 -38930159 + AluJb SINE Alu 1 296 -16 489 186 6 169 chr15 62450362 62450478 -38930043 - L1ME1 LINE L1 -1132 5014 4881 189 0 0 0 chr15 62450486 62450507 -38930014 + (T)n Simple_repeat Simple_repeat 1 21 0 2281 115 0 3 chr15 62450829 62451142 -38929379 - AluSx SINE Alu 0 312 1 888 143 0 23 chr15 62451272 62451405 -38929116 + FLAM_C SINE Alu 3 132 -1 428 198 11 11 chr15 62451830 62451921 -38928600 + MIR SINE MIR 61 151 -57 2407 88 0 7 chr15 62452109 62452416 -38928105 - AluY SINE Alu -6 305 1 2223 105 26 7 chr15 62452423 62452727 -38927794 - AluSx SINE Alu -1 311 2 225 309 52 87 chr15 62453364 62453594 -38926927 + L2 LINE L2 2997 3218 -54 392 321 6 25 chr15 62454205 62454364 -38926157 + MIR SINE MIR 35 190 -72 * 686 247 53 7 chr15 62454363 62454513 -38926008 - MER5B DNA MER1_type -18 160 4 2438 100 0 3 chr15 62454532 62454843 -38925678 - AluSx SINE Alu -2 310 1 8694 47 1 0 chr15 62455226 62456194 -38924327 - LTR5 LTR ERVK 0 969 1 2465 71 0 23 chr15 62456277 62456586 -38923935 + AluSx SINE Alu 1 302 -10 1765 171 10 27 chr15 62457601 62457899 -38922622 - AluJo SINE Alu -19 293 1 393 237 60 127 chr15 62457956 62458029 -38922492 - L2 LINE L2 -12 3301 3225 2513 79 3 0 chr15 62458029 62458334 -38922187 + AluSp SINE Alu 1 306 -7 393 237 60 127 chr15 62458334 62458543 -38921978 - L2 LINE L2 -88 3225 2997 788 113 0 0 chr15 62458545 62458651 -38921870 + U6 snRNA snRNA 1 106 -1 2260 129 0 3 chr15 62458664 62458975 -38921546 + AluSx SINE Alu 1 310 -2 780 167 8 8 chr15 62459046 62459172 -38921349 - FRAM SINE Alu -19 157 32 180 0 0 0 chr15 62459190 62459210 -38921311 + (TA)n Simple_repeat Simple_repeat 2 21 0 874 252 46 60 chr15 62459255 62459564 -38920957 - L1MEc LINE L1 -3595 2620 2361 2300 107 3 7 chr15 62459564 62459872 -38920649 - AluSx SINE Alu -5 307 1 874 252 46 60 chr15 62459872 62460119 -38920402 - L1MEc LINE L1 -3854 2361 2112 1940 137 20 7 chr15 62460140 62460432 -38920089 - AluSx SINE Alu -16 296 1 318 297 108 14 chr15 62460449 62460659 -38919862 - L1MEc LINE L1 -4548 1848 1598 253 119 0 24 chr15 62460795 62460837 -38919684 + Alu SINE Alu 5 45 -255 302 270 135 16 chr15 62460993 62461119 -38919402 - MER63A DNA MER1_type 0 210 70 235 113 113 0 chr15 62461132 62461185 -38919336 + L1MB1 LINE L1 6060 6118 -50 1206 169 3 152 chr15 62461305 62461581 -38918940 + AluJo SINE Alu 1 214 -88 226 0 59 0 chr15 62461581 62461615 -38918906 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1206 169 3 152 chr15 62461615 62461693 -38918828 + AluJo SINE Alu 214 302 0 24 0 0 0 chr15 62461694 62461718 -38918803 + AT_rich Low_complexity Low_complexity 1 24 0 582 120 33 0 chr15 62461724 62461816 -38918705 + L1MB1 LINE L1 6031 6125 -43 2294 70 40 10 chr15 62461816 62462118 -38918403 + AluY SINE Alu 1 311 0 2035 145 10 0 chr15 62462141 62462444 -38918077 + AluSx SINE Alu 1 306 -6 27 0 0 0 chr15 62462467 62462494 -38918027 + AT_rich Low_complexity Low_complexity 1 27 0 228 246 143 0 chr15 62462548 62462674 -38917847 - L1MEc LINE L1 -5965 240 97 562 165 10 39 chr15 62462863 62462966 -38917555 - AluJ/FLAM SINE Alu -212 100 1 627 254 127 39 chr15 62463195 62463533 -38916988 - MLT1F1 LTR MaLR 0 595 228 2501 62 0 37 chr15 62463554 62463688 -38916833 + AluY SINE Alu 1 138 -173 1132 84 0 0 chr15 62463688 62463843 -38916678 + L1PA5 LINE L1 5999 6153 -1 2501 62 0 37 chr15 62463843 62464031 -38916490 + AluY SINE Alu 138 311 0 777 224 24 0 chr15 62464035 62464205 -38916316 - MLT1F1 LTR MaLR -369 198 25 350 294 231 13 chr15 62464324 62464469 -38916052 - L2 LINE L2 -353 2961 2849 2567 53 0 0 chr15 62464469 62464768 -38915753 + AluY SINE Alu 1 299 -12 350 294 231 13 chr15 62464768 62464860 -38915661 - L2 LINE L2 -465 2849 2672 499 271 126 5 chr15 62464982 62465189 -38915332 - L2 LINE L2 -1216 2098 1867 258 32 0 0 chr15 62465401 62465432 -38915089 + (T)n Simple_repeat Simple_repeat 1 31 0 1107 122 147 41 chr15 62465669 62465914 -38914607 + ORSL DNA AcHobo 1 271 -4 2270 92 0 10 chr15 62467057 62467351 -38913170 + AluSc SINE Alu 1 291 -18 272 256 179 51 chr15 62467355 62467472 -38913049 + L2 LINE L2 3181 3312 -1 2798 16 0 0 chr15 62467546 62467849 -38912672 + AluYa5 SINE Alu 1 303 -8 5901 122 53 45 chr15 62468029 62468123 -38912398 - Tigger2 DNA MER2_type -147 2571 2479 1338 177 52 62 chr15 62468123 62468411 -38912110 + AluSx SINE Alu 1 285 -27 180 0 0 0 chr15 62468411 62468431 -38912090 + (TA)n Simple_repeat Simple_repeat 2 21 0 5901 122 53 45 chr15 62468431 62469294 -38911227 - Tigger2 DNA MER2_type -239 2479 1494 2232 110 0 20 chr15 62469294 62469593 -38910928 + AluSx SINE Alu 1 293 -19 5901 122 53 45 chr15 62469593 62469957 -38910564 - Tigger2 DNA MER2_type -1224 1494 1134 189 0 0 0 chr15 62469957 62469978 -38910543 + (T)n Simple_repeat Simple_repeat 1 21 0 382 304 101 70 chr15 62470103 62470590 -38909931 - L2 LINE L2 -46 3267 2759 2542 74 0 6 chr15 62470590 62470901 -38909620 + AluSc SINE Alu 1 309 0 382 304 101 70 chr15 62470901 62470990 -38909531 - L2 LINE L2 -554 2759 2674 1666 189 79 53 chr15 62471257 62471728 -38908793 + MLT1D LTR MaLR 23 505 0 971 270 179 42 chr15 62471734 62471903 -38908618 + L2 LINE L2 2052 2197 -1117 2248 91 14 10 chr15 62471903 62472199 -38908322 + AluSq SINE Alu 1 297 -16 971 270 179 42 chr15 62472199 62472622 -38907899 + L2 LINE L2 2197 2725 -589 438 227 62 0 chr15 62472624 62472752 -38907769 - L1MA10 LINE L1 -1 6333 6198 1799 175 0 7 chr15 62472754 62473040 -38907481 + AluJo SINE Alu 10 293 -19 2364 107 0 3 chr15 62473044 62473352 -38907169 + AluSc SINE Alu 1 307 -2 195 129 0 0 chr15 62473357 62473388 -38907133 + (A)n Simple_repeat Simple_repeat 1 31 0 3970 211 70 48 chr15 62473394 62473551 -38906970 - L1ME1 LINE L1 -115 6051 5899 2436 89 0 0 chr15 62473551 62473854 -38906667 - AluY SINE Alu -8 303 1 1026 144 0 46 chr15 62473854 62474028 -38906493 - FRAM SINE Alu 0 166 1 3970 211 70 48 chr15 62474028 62474040 -38906481 - L1ME1 LINE L1 -267 5899 5889 1450 114 44 161 chr15 62474040 62474222 -38906299 - AluSx SINE Alu 0 302 177 360 0 0 0 chr15 62474222 62474262 -38906259 + (TG)n Simple_repeat Simple_repeat 2 41 0 1450 114 44 161 chr15 62474262 62474421 -38906100 - AluSx SINE Alu -125 177 1 3970 211 70 48 chr15 62474421 62474730 -38905791 - L1ME1 LINE L1 -277 5889 5588 2078 141 0 10 chr15 62474730 62475034 -38905487 - AluSx SINE Alu -11 301 1 2445 90 0 10 chr15 62475038 62475339 -38905182 - AluSx SINE Alu -14 298 1 3970 211 70 48 chr15 62475339 62476597 -38903924 - L1ME1 LINE L1 -580 5586 4262 2310 91 0 0 chr15 62476597 62476913 -38903608 - AluSx SINE Alu 0 316 1 3970 211 70 48 chr15 62476913 62477151 -38903370 - L1ME1 LINE L1 -1904 4262 4031 1920 147 7 3 chr15 62477151 62477444 -38903077 - AluJb SINE Alu -13 299 6 976 179 1 65 chr15 62477444 62477673 -38902848 - L1ME1 LINE L1 -2458 3688 3473 790 293 126 45 chr15 62477859 62478186 -38902335 + L2 LINE L2 2826 3200 -113 2952 75 3 0 chr15 62478186 62478547 -38901974 - THE1B LTR MaLR 0 364 3 790 293 126 45 chr15 62478547 62478663 -38901858 + L2 LINE L2 3200 3305 -8 182 231 90 64 chr15 62480084 62480162 -38900359 - L2 LINE L2 -2848 466 387 393 217 21 82 chr15 62480838 62480894 -38899627 - MIR SINE MIR 0 262 204 1935 151 0 13 chr15 62480894 62481193 -38899328 - AluJo SINE Alu -17 295 1 393 217 21 82 chr15 62481193 62481325 -38899196 - MIR SINE MIR -58 204 31 188 268 0 0 chr15 62481425 62481466 -38899055 - MIR3 SINE MIR -39 169 129 2619 64 0 0 chr15 62481691 62482002 -38898519 - AluY SINE Alu 0 311 1 227 232 18 0 chr15 62482043 62482099 -38898422 + MER115 DNA AcHobo 28 84 -609 2540 84 0 0 chr15 62484006 62484316 -38896205 - AluSx SINE Alu -2 310 1 423 259 114 0 chr15 62484348 62484479 -38896042 + MIR SINE MIR 60 205 -57 2161 118 0 50 chr15 62484756 62485078 -38895443 - AluSx SINE Alu -2 310 5 522 199 222 17 chr15 62485283 62485459 -38895062 - MLT1K LTR MaLR -36 552 341 2621 68 0 0 chr15 62485651 62485962 -38894559 - AluY SINE Alu 0 311 1 406 246 52 73 chr15 62485962 62486186 -38894335 - MLT1K LTR MaLR -361 227 7 2262 114 3 16 chr15 62486745 62487062 -38893459 + AluSq SINE Alu 1 313 0 305 267 0 27 chr15 62487180 62487255 -38893266 + L2 LINE L2 2926 2998 -274 427 224 31 0 chr15 62487270 62487368 -38893153 + MIR SINE MIR 15 115 -147 1934 125 35 55 chr15 62487373 62487497 -38893024 + AluSx SINE Alu 1 126 -186 2248 105 0 60 chr15 62487497 62487829 -38892692 + AluSx SINE Alu 1 312 0 1934 125 35 55 chr15 62487829 62488015 -38892506 + AluSx SINE Alu 126 305 -7 298 244 176 25 chr15 62488176 62488295 -38892226 + L2 LINE L2 3169 3305 -8 232 230 0 81 chr15 62490766 62490840 -38889681 - MIR3 SINE MIR -48 160 93 40 0 0 0 chr15 62491739 62491779 -38888742 + AT_rich Low_complexity Low_complexity 1 40 0 2300 120 0 7 chr15 62491811 62492120 -38888401 - AluSq SINE Alu -6 307 1 2154 129 7 7 chr15 62492486 62492796 -38887725 - AluSx SINE Alu -2 310 1 224 383 47 9 chr15 62493048 62493155 -38887366 - L2 LINE L2 -5 3308 3198 507 211 109 41 chr15 62494009 62494156 -38886365 + MIR SINE MIR 94 250 -12 35 24 0 0 chr15 62494346 62494388 -38886133 + AT_rich Low_complexity Low_complexity 1 42 0 274 301 142 0 chr15 62494643 62494756 -38885765 - MER117 DNA MER1_type -68 129 1 415 277 77 0 chr15 62495666 62495796 -38884725 - MIR SINE MIR -51 211 72 221 195 26 91 chr15 62495997 62496012 -38884509 + MER5A DNA MER1_type 3 12 -177 509 203 224 7 chr15 62496012 62496155 -38884366 - MER5A DNA MER1_type -1 188 15 860 139 12 81 chr15 62496168 62496275 -38884246 - MER5B DNA MER1_type -15 163 71 2072 91 68 20 chr15 62496275 62496571 -38883950 - AluSg SINE Alu 0 310 1 860 139 12 81 chr15 62496571 62496635 -38883886 - MER5B DNA MER1_type -107 71 4 583 200 187 20 chr15 62496650 62496800 -38883721 - MER5A DNA MER1_type -6 183 9 2035 141 3 7 chr15 62497328 62497633 -38882888 + AluSq SINE Alu 5 308 -5 287 79 0 0 chr15 62497692 62497730 -38882791 + Alu SINE Alu 1 38 -264 336 120 10 160 chr15 62497831 62497869 -38882652 + L1MB8 LINE L1 6088 6104 -74 2519 48 0 3 chr15 62497869 62498163 -38882358 - AluY SINE Alu -18 293 1 336 120 10 160 chr15 62498163 62498224 -38882297 + L1MB8 LINE L1 6103 6172 -6 545 165 0 0 chr15 62498382 62498473 -38882048 + AluJ/FLAM SINE Alu 2 92 -220 909 68 0 8 chr15 62499405 62499522 -38880999 + U5 snRNA snRNA 1 116 0 709 135 0 18 chr15 62499733 62499844 -38880677 + AluSq/x SINE Alu 2 110 -203 488 204 80 0 chr15 62499847 62499960 -38880561 - MER33 DNA MER1_type -184 140 19 2394 84 13 10 chr15 62500261 62500572 -38879949 + AluSq SINE Alu 2 313 0 1431 160 16 85 chr15 62500649 62500955 -38879566 - AluJb SINE Alu -27 285 1 588 276 132 36 chr15 62500997 62501844 -38878677 - L1ME LINE L1 -724 5440 4487 2403 87 7 0 chr15 62501844 62502144 -38878377 - AluSg SINE Alu -6 304 3 588 276 132 36 chr15 62502144 62502179 -38878342 - L1ME LINE L1 -1677 4487 4457 403 317 75 45 chr15 62502199 62502398 -38878123 - L1ME LINE L1 -1771 4375 4171 2152 131 7 0 chr15 62502400 62502706 -38877815 - AluSx SINE Alu -4 308 1 1862 161 17 3 chr15 62502730 62503021 -38877500 - AluJb SINE Alu -13 299 5 608 202 54 31 chr15 62503053 62503182 -38877339 + FLAM_A SINE Alu 1 132 -1 2051 164 3 0 chr15 62503192 62503491 -38877030 + AluSx SINE Alu 1 300 -12 1522 142 0 0 chr15 62503491 62503732 -38876789 + AluSg/x SINE Alu 71 312 0 2386 91 3 0 chr15 62503732 62504028 -38876493 + AluSp SINE Alu 1 297 -16 2121 123 0 0 chr15 62504030 62504327 -38876194 + AluSc SINE Alu 3 299 0 184 288 119 34 chr15 62504527 62504645 -38875876 - L2 LINE L2 -189 3083 2956 592 307 35 4 chr15 62504842 62505073 -38875448 + L1MC4 LINE L1 7382 7619 -423 1043 130 0 0 chr15 62505080 62505218 -38875303 - AluSx SINE Alu -30 282 145 1063 109 7 0 chr15 62505287 62505425 -38875096 - AluSx SINE Alu -173 139 1 288 114 0 0 chr15 62505428 62505472 -38875049 + AluSc SINE Alu 90 133 -166 1133 167 40 22 chr15 62505472 62505694 -38874827 + AluJb SINE Alu 1 226 -86 400 92 15 0 chr15 62505798 62505863 -38874658 + Alu SINE Alu 240 305 -7 2401 91 0 0 chr15 62505876 62506174 -38874347 + AluSg SINE Alu 13 310 0 1860 152 24 3 chr15 62506181 62506477 -38874044 + AluJb SINE Alu 11 312 0 735 128 49 0 chr15 62506498 62506600 -38873921 - FLAM_C SINE Alu -35 108 2 431 246 18 9 chr15 62507736 62507846 -38872675 - MIR SINE MIR -48 214 104 2382 113 0 0 chr15 62507876 62508185 -38872336 - AluSx SINE Alu -3 309 1 2359 97 3 0 chr15 62508340 62508704 -38871817 - AluSc SINE Alu 0 365 1 226 238 0 32 chr15 62508356 62508717 -38871804 + CT-rich Low_complexity Low_complexity 3 63 0 1028 8 0 8 chr15 62508881 62508998 -38871523 - U5 snRNA snRNA 0 116 1 1264 107 12 0 chr15 62509305 62509473 -38871048 - AluSg/x SINE Alu -11 301 132 22 0 0 0 chr15 62509733 62509755 -38870766 + GC_rich Low_complexity Low_complexity 1 22 0 1130 156 5 5 chr15 62509777 62509969 -38870552 - AluJo SINE Alu -112 200 9 371 83 58 25 chr15 62510003 62510123 -38870398 + (TA)n Simple_repeat Simple_repeat 2 125 0 2462 133 58 28 chr15 62510166 62510497 -38870024 - L1MB4 LINE L1 0 6180 5829 2466 78 10 0 chr15 62510497 62510803 -38869718 - AluSq SINE Alu 0 313 5 2462 133 58 28 chr15 62510803 62510938 -38869583 - L1MB4 LINE L1 -351 5829 5700 1855 146 13 26 chr15 62511004 62511312 -38869209 - AluSx SINE Alu 0 312 9 740 136 17 0 chr15 62511312 62511430 -38869091 - AluJo/FLAM SINE Alu -182 130 11 368 253 10 10 chr15 62511453 62511552 -38868969 - AluSg/x SINE Alu -114 186 88 27 0 0 0 chr15 62511559 62511586 -38868935 + AT_rich Low_complexity Low_complexity 1 27 0 1692 234 129 24 chr15 62511607 62512307 -38868214 - L1MC3 LINE L1 -1677 6108 5336 2074 138 0 0 chr15 62512356 62512654 -38867867 + AluSx SINE Alu 1 298 -14 2235 110 10 0 chr15 62512654 62512954 -38867567 + AluSg SINE Alu 1 303 -7 1972 126 11 14 chr15 62512965 62513250 -38867271 + AluSc SINE Alu 2 285 -24 1313 148 29 69 chr15 62513903 62514180 -38866341 - AluJo SINE Alu -16 296 31 4436 133 25 47 chr15 62514180 62515604 -38864917 + pTR5 LTR ERV1 743 2438 0 1980 104 17 17 chr15 62516093 62516380 -38864141 + AluSx SINE Alu 1 287 -25 694 119 10 0 chr15 62516386 62516487 -38864034 - MER33 DNA MER1_type -217 107 6 406 326 60 37 chr15 62516501 62516716 -38863805 - L1 LINE L1 -1900 4246 4027 1092 178 14 33 chr15 62516779 62516993 -38863528 + AluJb SINE Alu 1 210 -102 1895 94 0 35 chr15 62517253 62517509 -38863012 + AluSg SINE Alu 1 247 -63 2184 117 0 0 chr15 62517544 62517848 -38862673 + AluSx SINE Alu 1 304 0 289 175 68 78 chr15 62517983 62518086 -38862435 - MIR SINE MIR -95 167 66 22 0 0 0 chr15 62518189 62518211 -38862310 + AT_rich Low_complexity Low_complexity 1 22 0 254 267 58 25 chr15 62518792 62518912 -38861609 + MER113 DNA MER1_type? 1 124 -397 751 44 0 0 chr15 62519015 62519105 -38861416 + AluSp/q SINE Alu 209 298 -15 591 230 13 13 chr15 62519105 62519257 -38861264 - MER3 DNA MER1_type -57 152 1 335 159 0 0 chr15 62519562 62519631 -38860890 - FLAM_A SINE Alu 0 133 65 475 335 36 44 chr15 62519649 62519900 -38860621 + MIR SINE MIR 4 252 -10 199 186 70 0 chr15 62521838 62521881 -38858640 - L2 LINE L2 -3 3310 3265 2099 160 0 3 chr15 62521974 62522256 -38858265 + AluJb SINE Alu 1 283 -29 381 117 0 0 chr15 62522256 62522316 -38858205 + (CA)n Simple_repeat Simple_repeat 1 60 0 2099 160 0 3 chr15 62522316 62522345 -38858176 + AluJb SINE Alu 283 311 -1 391 257 146 35 chr15 62522483 62522627 -38857894 - MIR SINE MIR -87 175 16 340 304 25 57 chr15 62523150 62523167 -38857354 + MIR3 SINE MIR 39 55 -153 2467 68 0 7 chr15 62523167 62523462 -38857059 - AluSx SINE Alu -19 293 1 340 304 25 57 chr15 62523462 62523602 -38856919 + MIR3 SINE MIR 55 191 -17 398 279 123 39 chr15 62523997 62524151 -38856370 + MIR3 SINE MIR 32 198 -10 4095 98 4 18 chr15 62524180 62524352 -38856169 + MER41A LTR ERV1 1 174 -380 2326 98 0 16 chr15 62524352 62524691 -38855830 + AluSp SINE Alu 1 313 0 4095 98 4 18 chr15 62524691 62525080 -38855441 + MER41A LTR ERV1 174 554 0 5019 140 77 10 chr15 62525166 62526745 -38853776 + MER41A-int LTR ERV1 3 1775 -4171 691 75 0 0 chr15 62526729 62526823 -38853698 + MER41A-int LTR ERV1 1950 2043 -4220 * 2002 118 3 67 chr15 62526823 62527153 -38853368 - AluSx SINE Alu -3 309 1 2391 103 0 0 chr15 62527164 62527465 -38853056 - AluSx SINE Alu -11 301 1 10151 92 32 6 chr15 62527468 62527958 -38852563 + MER41A-int LTR ERV1 2716 3192 -2754 2523 74 7 0 chr15 62527958 62528256 -38852265 + AluY SINE Alu 1 300 -11 10151 92 32 6 chr15 62528256 62529904 -38850617 + MER41A-int LTR ERV1 3192 5703 -243 380 70 0 18 chr15 62529905 62529962 -38850559 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 2152 86 3 0 chr15 62529963 62530253 -38850268 - AluY SINE Alu -20 291 1 3126 82 37 15 chr15 62530254 62530596 -38849925 + MER41A LTR ERV1 84 440 -114 2115 132 0 0 chr15 62530596 62530906 -38849615 - AluSq SINE Alu 0 313 4 3126 82 37 15 chr15 62530906 62531024 -38849497 + MER41A LTR ERV1 440 554 0 323 339 29 52 chr15 62531210 62531384 -38849137 + L2 LINE L2 3096 3265 -7 200 283 50 61 chr15 62531444 62531543 -38848978 + MIR3 SINE MIR 61 158 -50 428 313 7 20 chr15 62531553 62531703 -38848818 - MER5B DNA MER1_type -3 175 28 21 0 0 0 chr15 62531875 62531896 -38848625 + GC_rich Low_complexity Low_complexity 1 21 0 34 93 0 0 chr15 62532176 62532273 -38848248 + GC_rich Low_complexity Low_complexity 1 97 0 2112 119 0 7 chr15 62533552 62533855 -38846666 - AluSx SINE Alu -11 301 1 1818 163 3 3 chr15 62534808 62535103 -38845418 - AluJb SINE Alu -11 301 7 755 159 83 0 chr15 62535365 62535497 -38845024 - FRAM SINE Alu -6 170 28 1870 136 31 0 chr15 62535530 62535816 -38844705 - AluSx SINE Alu -17 295 1 1700 126 92 0 chr15 62537388 62537681 -38842840 - L1M3 LINE L1 -460 5723 5404 620 144 117 0 chr15 62537696 62537807 -38842714 - MER33 DNA MER1_type -192 132 9 2207 116 7 0 chr15 62537814 62538124 -38842397 + AluSx SINE Alu 1 312 0 216 390 19 13 chr15 62538127 62538281 -38842240 + L3 LINE CR1 1301 1455 -122 1386 153 0 14 chr15 62539411 62539462 -38841059 + AluJo SINE Alu 85 135 -177 2204 123 0 0 chr15 62539462 62539772 -38840749 + AluSg SINE Alu 1 310 0 1386 153 0 14 chr15 62539772 62539943 -38840578 + AluJo SINE Alu 135 304 -8 229 302 0 0 chr15 62542372 62542435 -38838086 + MIR SINE MIR 81 143 -65 472 235 22 37 chr15 62546994 62547130 -38833391 + MIR SINE MIR 18 151 -57 286 234 9 5 chr15 62547845 62547966 -38832555 + MER91A DNA MER1_type 1 175 -21 597 239 116 0 chr15 62548627 62548782 -38831739 + MIR SINE MIR 18 190 -72 198 0 0 0 chr15 62550524 62550546 -38829975 + (A)n Simple_repeat Simple_repeat 1 22 0 1905 151 3 3 chr15 62551910 62552209 -38828312 - AluSp SINE Alu -14 299 1 252 234 19 136 chr15 62552211 62552365 -38828156 - MIR SINE MIR -113 149 14 197 302 81 0 chr15 62552474 62552560 -38827961 - MIR SINE MIR -93 169 77 340 294 10 20 chr15 62552641 62552743 -38827778 + L3 LINE CR1 864 964 -613 2213 112 0 3 chr15 62552986 62553299 -38827222 - AluSx SINE Alu 0 312 1 850 444 109 4 chr15 62553755 62554021 -38826500 + AluSg SINE Alu 1 294 -6 2043 107 10 7 chr15 62554052 62554350 -38826171 + AluSx SINE Alu 1 299 -13 1941 139 0 3 chr15 62554686 62554981 -38825540 - AluSx SINE Alu -17 295 2 2085 112 14 0 chr15 62554983 62555278 -38825243 - AluY SINE Alu -12 299 1 470 73 0 0 chr15 62555281 62555349 -38825172 - FAM SINE Alu 0 185 118 1114 244 177 25 chr15 62555349 62555799 -38824722 - MLT1G1 LTR MaLR -36 559 1 629 172 0 0 chr15 62555828 62555948 -38824573 + AluSg/x SINE Alu 188 307 0 1722 164 14 0 chr15 62556247 62556534 -38823987 + AluJb SINE Alu 1 291 -21 644 255 13 7 chr15 62557451 62557600 -38822921 + MIR SINE MIR 28 177 -85 1719 190 37 3 chr15 62557611 62557959 -38822562 + L1MB8 LINE L1 4615 4974 -1172 1075 170 5 5 chr15 62557959 62558153 -38822368 + AluJo SINE Alu 117 310 -2 218 32 32 0 chr15 62558159 62558190 -38822331 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2518 175 34 59 chr15 62558195 62558271 -38822250 + L1MB8 LINE L1 5601 5677 -501 2401 84 7 0 chr15 62558271 62558579 -38821942 + AluSx SINE Alu 3 312 0 2518 175 34 59 chr15 62558579 62559095 -38821426 + L1MB8 LINE L1 5677 6178 0 2195 96 7 0 chr15 62559273 62559566 -38820955 + AluSq SINE Alu 1 295 -18 372 133 0 0 chr15 62559566 62559626 -38820895 + (GGA)n Simple_repeat Simple_repeat 1 60 0 195 129 0 0 chr15 62559627 62559658 -38820863 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 1802 126 23 0 chr15 62560403 62560665 -38819856 - AluSq SINE Alu -45 268 1 2136 113 3 7 chr15 62560690 62560999 -38819522 - AluSx SINE Alu -4 308 1 1938 117 3 7 chr15 62561010 62561318 -38819203 - AluSx SINE Alu 0 307 1 1951 139 0 13 chr15 62561320 62561623 -38818898 - AluSx SINE Alu -13 299 1 928 120 0 0 chr15 62561628 62561761 -38818760 - AluJb SINE Alu -179 133 1 207 0 0 0 chr15 62561781 62561804 -38818717 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2088 95 0 7 chr15 62561806 62562089 -38818432 - AluSx SINE Alu -31 281 1 188 255 43 0 chr15 62562173 62562220 -38818301 - MIR SINE MIR -58 150 102 567 232 116 34 chr15 62562551 62562583 -38817938 + MIR SINE MIR 2 30 -232 2178 93 0 0 chr15 62562583 62562872 -38817649 + AluY SINE Alu 1 289 -22 567 232 116 34 chr15 62562872 62563046 -38817475 + MIR SINE MIR 30 225 -37 250 266 9 37 chr15 62563112 62563221 -38817300 + L2 LINE L2 2877 2982 -290 2172 97 3 3 chr15 62563374 62563673 -38816848 + AluSp SINE Alu 2 300 -13 2388 65 0 10 chr15 62563673 62563981 -38816540 + AluY SINE Alu 1 305 -6 2158 101 0 7 chr15 62563991 62564297 -38816224 + AluSc SINE Alu 1 304 -5 2377 64 0 0 chr15 62564356 62564651 -38815870 + AluY SINE Alu 1 295 -16 28 0 0 0 chr15 62564651 62564679 -38815842 + AT_rich Low_complexity Low_complexity 1 28 0 1616 78 0 30 chr15 62564779 62565009 -38815512 - AluSg1 SINE Alu -86 223 1 434 172 83 105 chr15 62565065 62565227 -38815294 + MLT1H LTR MaLR 10 135 -274 246 297 0 0 chr15 62565344 62565418 -38815103 + MLT1H LTR MaLR 303 376 -179 1659 189 7 0 chr15 62565461 62565758 -38814763 - AluJo SINE Alu -9 303 5 2050 119 0 0 chr15 62565774 62566059 -38814462 - AluSx SINE Alu -13 299 15 368 40 20 0 chr15 62566197 62566247 -38814274 + (TC)n Simple_repeat Simple_repeat 2 52 0 185 0 0 39 chr15 62566268 62566294 -38814227 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 2123 119 0 3 chr15 62566305 62566615 -38813906 - AluSg SINE Alu -1 309 1 215 276 146 8 chr15 62567376 62567499 -38813022 - MIR SINE MIR -6 256 117 582 238 73 44 chr15 62567664 62567870 -38812651 - MIR SINE MIR -8 254 43 367 288 54 0 chr15 62567878 62567989 -38812532 + MER5A DNA MER1_type 73 189 0 583 248 95 50 chr15 62568319 62568379 -38812142 + MER46C DNA MER2_type 1 57 -281 2133 111 0 22 chr15 62568379 62568694 -38811827 - AluSx SINE Alu -4 308 1 583 248 95 50 chr15 62568694 62568875 -38811646 + MER46C DNA MER2_type 57 253 -85 375 221 23 0 chr15 62569422 62569508 -38811013 + MER46C DNA MER2_type 251 338 0 2183 110 0 3 chr15 62570117 62570418 -38810103 + AluSc SINE Alu 1 300 -9 571 213 57 0 chr15 62570509 62570631 -38809890 + FLAM_A SINE Alu 1 129 -4 1608 160 10 51 chr15 62570717 62571030 -38809491 + AluJb SINE Alu 1 300 -12 252 211 19 0 chr15 62571130 62571182 -38809339 - L2 LINE L2 -3 3269 3217 1977 113 7 3 chr15 62571273 62571565 -38808956 + AluSx SINE Alu 2 294 -18 565 271 72 6 chr15 62571796 62571977 -38808544 + MIR SINE MIR 63 255 -7 210 308 29 105 chr15 62572001 62572173 -38808348 - L2 LINE L2 -414 2900 2742 741 138 71 112 chr15 62572736 62572811 -38807710 - MER53 DNA DNA 0 189 112 1665 157 27 20 chr15 62572811 62573105 -38807416 - AluJb SINE Alu -16 296 1 741 138 71 112 chr15 62573105 62573153 -38807368 - MER53 DNA DNA -77 112 64 1907 128 3 3 chr15 62573153 62573435 -38807086 + AluSq SINE Alu 17 298 -15 741 138 71 112 chr15 62573435 62573506 -38807015 - MER53 DNA DNA -125 64 2 661 258 66 14 chr15 62573900 62574137 -38806384 - MIR SINE MIR 0 262 2 235 313 47 99 chr15 62574558 62574791 -38805730 - MER102b DNA MER1_type -13 328 108 320 266 46 18 chr15 62575633 62575742 -38804779 + MIR SINE MIR 140 251 -11 570 211 8 55 chr15 62576247 62576375 -38804146 + MER5B DNA MER1_type 50 171 -7 317 80 20 20 chr15 62576423 62576473 -38804048 + FLAM SINE Alu 62 111 -22 408 233 12 64 chr15 62576544 62576592 -38803929 + L1ME LINE L1 5573 5622 -499 1972 149 0 0 chr15 62576592 62576894 -38803627 + AluSx SINE Alu 1 302 -10 408 233 12 64 chr15 62576894 62577017 -38803504 + L1ME LINE L1 5622 5735 -386 384 277 248 0 chr15 62577336 62577477 -38803044 - MER5A DNA MER1_type 0 189 14 2234 90 0 3 chr15 62577845 62578145 -38802376 + AluSq SINE Alu 1 299 -14 1728 143 21 11 chr15 62578460 62578746 -38801775 - AluJb SINE Alu -23 289 1 24 0 0 0 chr15 62579409 62579433 -38801088 + AT_rich Low_complexity Low_complexity 1 24 0 822 155 0 0 chr15 62579592 62579708 -38800813 + FLAM_C SINE Alu 1 116 -27 190 218 0 91 chr15 62580213 62580268 -38800253 + L2 LINE L2 3263 3312 -1 747 303 77 19 chr15 62580579 62580775 -38799746 - L1M4 LINE L1 -2264 3882 3699 2028 83 80 21 chr15 62580775 62581063 -38799458 - AluSg SINE Alu -5 305 1 747 303 77 19 chr15 62581063 62581245 -38799276 - L1M4 LINE L1 -2447 3699 3482 1531 145 130 4 chr15 62581249 62581511 -38799010 - AluJo SINE Alu -6 306 12 2409 84 7 3 chr15 62581578 62581876 -38798645 - AluSp SINE Alu -14 299 1 218 281 0 12 chr15 62583418 62583500 -38797021 + (CCCCG)n Simple_repeat Simple_repeat 2 82 0 327 297 30 0 chr15 62583776 62583877 -38796644 - MIR SINE MIR -65 143 40 235 265 82 0 chr15 62584756 62584854 -38795667 - L1MC/D LINE L1 -2330 5478 5373 370 158 0 0 chr15 62584952 62585009 -38795512 - AluS SINE Alu -243 57 1 2391 110 0 0 chr15 62585281 62585590 -38794931 - AluSg SINE Alu -1 309 1 33 0 0 0 chr15 62585631 62585664 -38794857 + AT_rich Low_complexity Low_complexity 1 33 0 1971 161 26 3 chr15 62585694 62585999 -38794522 - AluJb SINE Alu 0 312 1 33 25 0 0 chr15 62586049 62586089 -38794432 + AT_rich Low_complexity Low_complexity 1 40 0 2717 11 0 0 chr15 62586102 62586434 -38794087 - AluYb8 SINE Alu 0 332 1 2456 44 40 0 chr15 62586741 62587038 -38793483 - AluYa5 SINE Alu -2 309 1 1735 106 63 73 chr15 62587049 62587232 -38793289 - AluSx SINE Alu -1 311 131 1980 85 44 0 chr15 62587232 62587480 -38793041 - AluSx SINE Alu -53 259 1 1735 106 63 73 chr15 62587480 62587598 -38792923 - AluSx SINE Alu -181 131 13 391 331 80 0 chr15 62587711 62587862 -38792659 + L2 LINE L2 3107 3269 -3 546 200 17 9 chr15 62587928 62588043 -38792478 - FLAM_C SINE Alu -12 131 16 314 207 0 0 chr15 62588284 62588342 -38792179 + MLT1G LTR MaLR 2 59 -508 2034 141 31 0 chr15 62588342 62588632 -38791889 + AluSx SINE Alu 1 299 -13 637 248 109 65 chr15 62588636 62589050 -38791471 + MLT1G LTR MaLR 113 551 -4 269 189 74 32 chr15 62589290 62589385 -38791136 + L1ME4a LINE L1 6020 6118 -3 851 132 0 20 chr15 62589423 62589533 -38790988 + L1MB3 LINE L1 6033 6141 -42 1855 182 0 3 chr15 62589533 62589841 -38790680 + AluJb SINE Alu 1 307 -5 851 132 0 20 chr15 62589841 62589882 -38790639 + L1MB3 LINE L1 6141 6181 -2 697 234 75 55 chr15 62590252 62590353 -38790168 + HAL1 LINE L1 1981 2078 -429 1988 143 0 3 chr15 62590353 62590640 -38789881 + AluSx SINE Alu 9 294 -18 697 234 75 55 chr15 62590640 62590884 -38789637 + HAL1 LINE L1 2078 2333 -174 288 274 128 0 chr15 62591658 62591760 -38788761 + L2 LINE L2 2945 3059 -213 304 264 66 11 chr15 62591800 62591891 -38788630 - MIR SINE MIR -27 235 140 277 180 33 140 chr15 62591947 62592097 -38788424 + MIR SINE MIR 70 203 -59 2295 109 0 13 chr15 62592250 62592552 -38787969 + AluSx SINE Alu 1 298 -14 205 281 124 11 chr15 62592903 62592992 -38787529 - MIR SINE MIR -80 182 84 441 0 0 0 chr15 62593197 62593246 -38787275 + (TG)n Simple_repeat Simple_repeat 2 50 0 2059 145 0 7 chr15 62593257 62593416 -38787105 - AluJo SINE Alu -17 295 137 2486 71 0 0 chr15 62593416 62593711 -38786810 - AluY SINE Alu -16 295 1 2059 145 0 7 chr15 62593711 62593848 -38786673 - AluJo SINE Alu -175 137 1 255 274 21 32 chr15 62593945 62594040 -38786481 + MIR SINE MIR 31 124 -84 * 395 235 118 22 chr15 62594039 62594175 -38786346 + MIR3 SINE MIR 35 183 -25 295 364 66 7 chr15 62594368 62594519 -38786002 + MIR3 SINE MIR 38 197 -11 2051 112 0 0 chr15 62594549 62594817 -38785704 - AluSx SINE Alu -44 268 1 444 286 30 54 chr15 62594822 62594990 -38785531 - MER5B DNA MER1_type -8 170 7 1050 90 8 0 chr15 62595353 62595487 -38785034 + AluSq/x SINE Alu 1 135 -177 1780 178 3 3 chr15 62595487 62595790 -38784731 + AluJb SINE Alu 1 303 -9 302 239 98 0 chr15 62595848 62595940 -38784581 + L2 LINE L2 3208 3308 -5 1667 159 64 0 chr15 62596829 62597093 -38783428 - AluJo SINE Alu -31 281 1 1846 174 3 0 chr15 62597117 62597404 -38783117 - AluJb SINE Alu -22 290 3 2040 138 3 7 chr15 62597658 62597954 -38782567 - AluSx SINE Alu -17 295 1 229 315 14 0 chr15 62598037 62598110 -38782411 - Charlie4 DNA MER1_type -4 1957 1884 2006 125 43 13 chr15 62598286 62598589 -38781932 + AluSx SINE Alu 1 312 0 2441 68 7 23 chr15 62598658 62598968 -38781553 + AluY SINE Alu 1 305 -6 25 31 0 0 chr15 62600057 62600089 -38780432 + AT_rich Low_complexity Low_complexity 1 32 0 314 343 6 34 chr15 62600117 62600292 -38780229 + MIR3 SINE MIR 37 206 -2 229 305 64 91 chr15 62600703 62600801 -38779720 + MER5A DNA MER1_type 7 99 -90 2261 121 0 7 chr15 62600801 62601107 -38779414 - AluSx SINE Alu -8 304 1 229 305 64 91 chr15 62601107 62601195 -38779326 + MER5A DNA MER1_type 99 188 -1 270 0 0 0 chr15 62601770 62601800 -38778721 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 189 0 0 0 chr15 62603506 62603527 -38776994 + (T)n Simple_repeat Simple_repeat 1 21 0 3630 202 100 9 chr15 62604120 62604992 -38775529 + Charlie1a DNA MER1_type 8 958 -497 853 223 13 77 chr15 62604992 62605225 -38775296 + AluJo SINE Alu 1 218 -94 24 0 0 0 chr15 62605257 62605281 -38775240 + AT_rich Low_complexity Low_complexity 1 24 0 2405 84 0 0 chr15 62605281 62605577 -38774944 + AluY SINE Alu 1 296 -15 344 191 75 64 chr15 62605578 62605672 -38774849 - L1MC4 LINE L1 -1339 6703 6609 459 107 50 14 chr15 62605672 62605812 -38774709 + (TA)n Simple_repeat Simple_repeat 2 146 0 1980 132 4 7 chr15 62605817 62606098 -38774423 + AluSx SINE Alu 3 282 -30 1584 165 3 84 chr15 62606216 62606549 -38773972 + AluJb SINE Alu 6 311 -1 248 294 0 112 chr15 62607240 62607383 -38773138 - MIR3 SINE MIR -6 202 76 2441 68 0 16 chr15 62607908 62608217 -38772304 - AluSx SINE Alu -8 304 1 589 248 77 1 chr15 62609271 62609446 -38771075 + MIR SINE MIR 37 222 -40 1907 168 20 0 chr15 62609663 62609967 -38770554 + AluJb SINE Alu 1 310 -2 416 234 56 19 chr15 62610111 62610218 -38770303 + MIR3 SINE MIR 77 187 -21 1786 138 38 21 chr15 62610848 62610985 -38769536 + AluJo SINE Alu 1 134 -178 2334 99 3 0 chr15 62610985 62611288 -38769233 + AluSq SINE Alu 1 304 -9 1786 138 38 21 chr15 62611288 62611441 -38769080 + AluJo SINE Alu 134 296 -16 2371 105 0 10 chr15 62612135 62612449 -38768072 + AluSx SINE Alu 1 311 -1 1101 71 0 0 chr15 62612449 62612625 -38767896 + L1PA3 LINE L1 5993 6168 0 282 29 0 0 chr15 62613228 62613263 -38767258 + (CA)n Simple_repeat Simple_repeat 1 35 0 202 220 20 0 chr15 62613923 62613973 -38766548 + GA-rich Low_complexity Low_complexity 1 51 0 307 243 14 0 chr15 62614353 62614427 -38766094 - MIR3 SINE MIR -52 156 82 2019 121 36 0 chr15 62615298 62615579 -38764942 + AluSx SINE Alu 1 291 -21 849 120 0 0 chr15 62615579 62615712 -38764809 + (TA)n Simple_repeat Simple_repeat 1 133 0 24 0 0 0 chr15 62615814 62615838 -38764683 + AT_rich Low_complexity Low_complexity 1 24 0 811 139 0 23 chr15 62615851 62615980 -38764541 - AluJo SINE Alu -178 134 9 470 237 0 0 chr15 62615984 62616081 -38764440 - MIR SINE MIR -117 145 49 672 282 24 40 chr15 62616247 62616499 -38764022 - MIR SINE MIR -7 255 8 244 287 287 0 chr15 62616560 62616696 -38763825 + MER5A DNA MER1_type 9 183 -6 268 315 181 0 chr15 62617226 62617375 -38763146 - MIR SINE MIR -15 247 72 613 265 84 42 chr15 62618700 62618915 -38761606 + MIR SINE MIR 34 257 -5 2165 128 0 3 chr15 62618918 62619215 -38761306 + AluSx SINE Alu 3 298 -14 532 263 38 25 chr15 62620654 62620814 -38759707 - MIR SINE MIR -67 195 34 237 305 8 42 chr15 62620877 62620995 -38759526 + MIR SINE MIR 83 196 -66 24 67 0 0 chr15 62621650 62621695 -38758826 + GC_rich Low_complexity Low_complexity 1 45 0 213 94 0 0 chr15 62622764 62622796 -38757725 + (CAG)n Simple_repeat Simple_repeat 3 34 0 22 0 0 0 chr15 62622806 62622828 -38757693 + GC_rich Low_complexity Low_complexity 1 22 0 223 197 0 56 chr15 62622920 62622991 -38757530 + (CTGGGG)n Simple_repeat Simple_repeat 4 70 0 246 293 0 0 chr15 62623110 62623185 -38757336 + C-rich Low_complexity Low_complexity 1 75 0 240 143 18 3 chr15 62624105 62624328 -38756193 + AluJb SINE Alu 1 302 0 2316 94 0 7 chr15 62624443 62624741 -38755780 + AluSx SINE Alu 10 305 -7 2307 87 0 0 chr15 62625827 62626102 -38754419 + AluSx SINE Alu 1 275 -37 279 0 0 0 chr15 62626111 62626142 -38754379 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1581 189 10 21 chr15 62626162 62626453 -38754068 + AluJo SINE Alu 9 296 -16 201 74 0 0 chr15 62627471 62627498 -38753023 + (A)n Simple_repeat Simple_repeat 1 27 0 713 196 10 93 chr15 62631990 62632096 -38748425 + MER45A DNA AcHobo 1 114 -1467 1951 151 0 30 chr15 62632096 62632400 -38748121 - AluJb SINE Alu -17 295 1 2522 68 0 16 chr15 62632406 62632717 -38747804 - AluY SINE Alu -5 306 1 713 196 10 93 chr15 62632717 62632797 -38747724 + MER45A DNA AcHobo 119 178 0 1010 120 0 7 chr15 62632892 62633028 -38747493 + AluSq/x SINE Alu 1 136 -171 2457 87 7 0 chr15 62633028 62633326 -38747195 + AluSq SINE Alu 1 300 -13 207 283 57 0 chr15 62635509 62635562 -38744959 - MIR SINE MIR -90 172 117 857 217 78 18 chr15 62635656 62635873 -38744648 + MIR SINE MIR 27 256 -6 385 254 91 9 chr15 62635883 62635993 -38744528 + L2 LINE L2 3195 3313 0 181 286 0 79 chr15 62635998 62636015 -38744506 - MIR3 SINE MIR -141 67 50 2244 122 10 0 chr15 62636015 62636311 -38744210 + AluSx SINE Alu 1 299 -13 181 286 0 79 chr15 62636311 62636356 -38744165 - MIR3 SINE MIR -158 50 10 367 236 65 0 chr15 62636425 62636557 -38743964 + MIR3 SINE MIR 3 148 -79 518 281 36 24 chr15 62637871 62638038 -38742483 - MIR SINE MIR -24 238 70 207 244 0 61 chr15 62638974 62639056 -38741465 + C-rich Low_complexity Low_complexity 3 79 0 729 200 0 0 chr15 62639060 62639190 -38741331 - FRAM SINE Alu -7 169 40 203 264 161 11 chr15 62639190 62639277 -38741244 - MIR SINE MIR -66 142 43 217 264 33 20 chr15 62639634 62639735 -38740786 - MIR SINE MIR -71 137 52 396 186 113 57 chr15 62639889 62640013 -38740508 + MIR SINE MIR 18 148 -60 258 257 108 68 chr15 62642198 62642346 -38738175 + MIR SINE MIR 109 262 0 247 217 98 0 chr15 62642512 62642604 -38737917 + L1P4 LINE L1 5332 5432 -734 919 128 0 0 chr15 62642612 62642745 -38737776 + FLAM_C SINE Alu 1 133 0 914 299 108 9 chr15 62642853 62643314 -38737207 + L1ME4a LINE L1 5615 6121 0 2399 112 0 0 chr15 62643316 62643628 -38736893 + AluSx SINE Alu 1 312 0 2140 74 3 44 chr15 62643661 62643990 -38736531 + AluY SINE Alu 1 317 0 228 197 30 45 chr15 62644166 62644232 -38736289 - MER5A DNA MER1_type -87 102 38 1615 157 92 11 chr15 62644255 62644536 -38735985 + AluJo SINE Alu 3 306 -6 215 306 12 35 chr15 62644551 62644636 -38735885 + MER5A DNA MER1_type 107 189 0 313 225 25 67 chr15 62645091 62645211 -38735310 + MIR SINE MIR 108 222 -40 219 304 98 11 chr15 62645322 62645414 -38735107 + L2 LINE L2 3137 3236 -36 183 328 17 0 chr15 62646047 62646105 -38734416 - MIR SINE MIR -49 213 155 380 236 0 11 chr15 62646326 62646415 -38734106 + MIR SINE MIR 23 110 -98 182 188 0 0 chr15 62646745 62646777 -38733744 - L2 LINE L2 -19 3253 3222 243 351 0 0 chr15 62646834 62646911 -38733610 - MIR SINE MIR -166 96 20 181 275 50 93 chr15 62647181 62647363 -38733158 + MIR3 SINE MIR 14 187 -21 1119 261 107 37 chr15 62647610 62647651 -38732870 + L1MC4a LINE L1 5401 5438 -2370 2457 67 7 0 chr15 62647651 62647949 -38732572 + AluSp SINE Alu 1 300 -13 1119 261 107 37 chr15 62647949 62648336 -38732185 + L1MC4a LINE L1 5438 5859 -1949 303 353 128 0 chr15 62648559 62648715 -38731806 - MIR SINE MIR -55 207 32 312 102 0 0 chr15 62649728 62649777 -38730744 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 1725 142 0 4 chr15 62649870 62650123 -38730398 + AluJb SINE Alu 38 289 -23 348 331 78 21 chr15 62650164 62650406 -38730115 + L1ME4a LINE L1 5848 6103 -18 244 267 95 38 chr15 62650527 62650632 -38729889 + MIR3 SINE MIR 83 193 -15 773 201 48 19 chr15 62651250 62651459 -38729062 - MER113 DNA MER1_type? -306 215 1 22 0 0 0 chr15 62652040 62652062 -38728459 + AT_rich Low_complexity Low_complexity 1 22 0 261 175 68 78 chr15 62652165 62652268 -38728253 + MIR SINE MIR 66 167 -95 2195 117 0 0 chr15 62652403 62652707 -38727814 - AluSx SINE Alu 0 304 1 1995 74 0 39 chr15 62652742 62652999 -38727522 - AluSg SINE Alu -63 247 1 947 119 15 0 chr15 62652999 62653133 -38727388 - AluJb SINE Alu -176 136 1 331 252 36 9 chr15 62653192 62653303 -38727218 + MIR SINE MIR 137 250 -12 307 227 27 0 chr15 62653578 62653653 -38726868 + MER103 DNA DNA 8 84 -82 1656 168 37 20 chr15 62653904 62654201 -38726320 - AluJb SINE Alu -10 302 1 306 297 44 0 chr15 62654901 62654992 -38725529 + MIR3 SINE MIR 67 161 -47 276 245 39 24 chr15 62656697 62656798 -38723723 + MIR SINE MIR 26 121 -87 2169 155 87 18 chr15 62656822 62657260 -38723261 + L1MB8 LINE L1 5699 6166 -12 1244 162 0 10 chr15 62657268 62657466 -38723055 + AluJo SINE Alu 84 279 -33 2547 87 0 0 chr15 62657482 62657791 -38722730 + AluSg SINE Alu 1 309 -1 191 176 0 0 chr15 62657791 62657825 -38722696 + L2 LINE L2 3218 3251 -21 1135 180 141 27 chr15 62657896 62658152 -38722369 + AluJo SINE Alu 1 285 -17 189 0 0 0 chr15 62658174 62658195 -38722326 + (TC)n Simple_repeat Simple_repeat 2 22 0 225 0 0 0 chr15 62658197 62658222 -38722299 + (CA)n Simple_repeat Simple_repeat 2 26 0 288 0 0 0 chr15 62658279 62658311 -38722210 + (TG)n Simple_repeat Simple_repeat 1 32 0 223 211 184 13 chr15 62658583 62658659 -38721862 - MIR3 SINE MIR -105 103 15 411 216 194 7 chr15 62659068 62659207 -38721314 + MIR3 SINE MIR 35 199 -9 216 219 0 0 chr15 62659604 62659645 -38720876 - L2 LINE L2 -92 3221 3181 288 264 165 9 chr15 62659709 62659884 -38720637 + MIR SINE MIR 42 250 -12 1714 155 8 0 chr15 62659889 62660147 -38720374 - AluSx SINE Alu -7 305 46 303 122 0 0 chr15 62660200 62660241 -38720280 - AluSx SINE Alu -258 42 2 229 158 0 0 chr15 62660862 62660900 -38719621 - MIR SINE MIR -62 146 109 308 302 1 47 chr15 62661187 62661294 -38719227 + MIR SINE MIR 44 148 -60 2639 43 20 0 chr15 62661387 62661689 -38718832 - AluY SINE Alu -3 308 1 2169 104 3 27 chr15 62662851 62663148 -38717373 - AluSx SINE Alu -22 290 1 412 219 0 0 chr15 62663219 62663292 -38717229 + L2 LINE L2 3241 3313 0 252 271 127 17 chr15 62663340 62663458 -38717063 + MIR SINE MIR 108 238 -24 254 354 76 0 chr15 62663512 62663656 -38716865 - L3 LINE CR1 -111 1466 1312 266 225 155 92 chr15 62664210 62664294 -38716227 + MIR3 SINE MIR 57 155 -53 1599 167 13 58 chr15 62664294 62664606 -38715915 - AluJo SINE Alu -1 311 14 266 225 155 92 chr15 62664606 62664663 -38715858 + MIR3 SINE MIR 155 207 -1 2420 106 0 0 chr15 62665187 62665499 -38715022 - AluSx SINE Alu 0 312 1 477 283 59 32 chr15 62665508 62665727 -38714794 + L2 LINE L2 2470 2694 -620 651 285 125 28 chr15 62665956 62666275 -38714246 + L2 LINE L2 2923 3272 0 378 0 0 0 chr15 62667772 62667814 -38712707 + (CA)n Simple_repeat Simple_repeat 2 43 0 25 31 0 0 chr15 62668085 62668117 -38712404 + GC_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr15 62668133 62668154 -38712367 + (CCG)n Simple_repeat Simple_repeat 2 22 0 222 231 0 26 chr15 62668209 62668287 -38712234 + G-rich Low_complexity Low_complexity 4 79 0 396 307 17 13 chr15 62668847 62669003 -38711518 - MIR3 SINE MIR -75 133 3 242 324 0 42 chr15 62669141 62669212 -38711309 + L3b LINE CR1 1513 1580 -3 341 169 0 14 chr15 62669337 62669408 -38711113 + L2 LINE L2 1931 2000 -1314 1805 247 151 36 chr15 62669408 62669663 -38710858 + L2 LINE L2 2167 2391 -922 874 108 0 8 chr15 62669663 62669793 -38710728 + FLAM_C SINE Alu 1 129 -4 1805 247 151 36 chr15 62669793 62670353 -38710168 + L2 LINE L2 2391 2885 -428 1871 119 94 3 chr15 62670353 62670639 -38709882 - AluSx SINE Alu 0 312 1 1805 247 151 36 chr15 62670639 62670651 -38709870 + L2 LINE L2 2885 2894 -419 2422 97 0 3 chr15 62670651 62670961 -38709560 - AluSx SINE Alu -3 309 1 1805 247 151 36 chr15 62670961 62671125 -38709396 + L2 LINE L2 2894 3285 -28 234 342 68 8 chr15 62671478 62671595 -38708926 - L2 LINE L2 -8 3305 3182 426 248 38 30 chr15 62671984 62672117 -38708404 + MIR3 SINE MIR 36 169 -39 2366 96 0 16 chr15 62672189 62672501 -38708020 + AluSq SINE Alu 1 307 -6 2135 125 0 3 chr15 62672722 62673018 -38707503 + AluJb SINE Alu 1 295 -17 48 18 0 0 chr15 62673363 62673418 -38707103 + AT_rich Low_complexity Low_complexity 1 55 0 1894 163 90 38 chr15 62673442 62673533 -38706988 + Charlie1 DNA MER1_type 2257 2342 -419 2268 112 3 0 chr15 62673533 62673827 -38706694 - AluSx SINE Alu -17 295 1 1894 163 90 38 chr15 62673827 62674073 -38706448 + Charlie1 DNA MER1_type 2342 2629 -132 2361 115 0 0 chr15 62674073 62674385 -38706136 - AluSp SINE Alu -1 312 1 1894 163 90 38 chr15 62674385 62674526 -38705995 + Charlie1 DNA MER1_type 2629 2761 0 23 0 0 0 chr15 62675430 62675453 -38705068 + AT_rich Low_complexity Low_complexity 1 23 0 1966 136 3 23 chr15 62675760 62676069 -38704452 + AluJb SINE Alu 1 303 -9 2129 113 10 14 chr15 62676811 62677122 -38703399 + AluSx SINE Alu 1 312 0 577 186 42 8 chr15 62677284 62677402 -38703119 - L2 LINE L2 0 3272 3151 216 216 0 0 chr15 62677550 62677601 -38702920 + (CATA)n Simple_repeat Simple_repeat 2 52 0 633 110 5 2 chr15 62677610 62677876 -38702645 + AluSx SINE Alu 1 312 0 2045 108 3 90 chr15 62677949 62678281 -38702240 + AluSx SINE Alu 1 303 -9 2331 104 10 3 chr15 62678641 62678948 -38701573 - AluSx SINE Alu -3 309 1 280 343 98 39 chr15 62679014 62679218 -38701303 - L3b LINE CR1 -120 1463 1248 1990 157 3 6 chr15 62679244 62679557 -38700964 - AluJb SINE Alu 0 312 1 195 42 0 0 chr15 62679746 62679770 -38700751 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 215 270 0 32 chr15 62679976 62680039 -38700482 + L3b LINE CR1 1263 1323 -260 369 324 103 32 chr15 62680925 62681110 -38699411 + L2 LINE L2 2804 3001 -312 2170 116 3 7 chr15 62681198 62681499 -38699022 + AluSx SINE Alu 1 300 -12 1221 129 65 5 chr15 62681506 62681692 -38698829 - AluJo SINE Alu -17 295 99 476 255 78 7 chr15 62681693 62681839 -38698682 + L2 LINE L2 3158 3313 0 894 191 6 0 chr15 62681920 62681937 -38698584 - AluJo/FRAM SINE Alu -3 299 137 923 172 7 0 chr15 62681937 62682082 -38698439 - FRAM SINE Alu -30 146 1 2139 132 0 0 chr15 62682390 62682686 -38697835 - AluSx SINE Alu -16 296 1 824 117 0 0 chr15 62683185 62683296 -38697225 - FLAM_C SINE Alu -32 111 1 1794 163 34 3 chr15 62683299 62683593 -38696928 - AluJo SINE Alu -9 303 1 2310 108 0 0 chr15 62683799 62684094 -38696427 + AluSx SINE Alu 1 295 -17 1033 95 65 12 chr15 62684118 62684286 -38696235 - L1MB4 LINE L1 0 6180 6004 1101 411 10 27 chr15 62684289 62684586 -38695935 + AluSx SINE Alu 4 295 -7 4411 138 26 41 chr15 62684610 62684781 -38695740 - L1MB4 LINE L1 0 6180 6008 1998 135 7 3 chr15 62684781 62685084 -38695437 + AluSx SINE Alu 4 307 -5 4411 138 26 41 chr15 62685084 62685725 -38694796 - L1MB4 LINE L1 -172 6008 5380 1746 146 43 7 chr15 62685773 62686053 -38694468 - AluJo SINE Alu -22 290 1 2068 121 10 3 chr15 62686227 62686517 -38694004 - AluSg SINE Alu -18 292 1 2161 127 0 0 chr15 62686587 62686887 -38693634 - AluSx SINE Alu -12 300 1 2133 102 3 3 chr15 62687214 62687497 -38693024 - AluSc SINE Alu -26 283 1 2263 107 0 10 chr15 62687875 62688175 -38692346 + AluSq SINE Alu 1 297 -16 200 238 0 0 chr15 62688331 62688373 -38692148 + (TA)n Simple_repeat Simple_repeat 2 43 0 2477 73 0 10 chr15 62688700 62689014 -38691507 + AluY SINE Alu 1 311 0 1829 158 0 26 chr15 62689018 62689322 -38691199 + AluJb SINE Alu 1 296 -16 2340 110 3 0 chr15 62689775 62690085 -38690436 - AluSq SINE Alu -2 311 1 2149 93 41 3 chr15 62690184 62690475 -38690046 - AluY SINE Alu -9 302 1 1956 155 3 0 chr15 62690761 62691057 -38689464 - AluSx SINE Alu -15 297 1 1331 229 20 20 chr15 62691992 62692297 -38688224 - AluJo SINE Alu -7 305 1 1971 164 3 3 chr15 62692832 62693130 -38687391 + AluJo SINE Alu 1 298 -14 1092 133 10 79 chr15 62693862 62694065 -38686456 + THE1B LTR MaLR 176 364 0 1037 191 22 0 chr15 62694068 62694246 -38686275 + AluJo SINE Alu 109 290 -22 1554 128 67 83 chr15 62694299 62694487 -38686034 - AluJo SINE Alu 0 333 144 2146 142 0 0 chr15 62694487 62694796 -38685725 - AluSq SINE Alu -4 309 1 1554 128 67 83 chr15 62694796 62694833 -38685688 - AluJo SINE Alu -189 144 108 2412 81 0 0 chr15 62694833 62695130 -38685391 - AluSp SINE Alu -14 299 3 1554 128 67 83 chr15 62695130 62695238 -38685283 - AluJo SINE Alu -225 108 4 209 294 95 56 chr15 62695369 62695495 -38685026 + L2 LINE L2 3173 3303 -10 781 215 21 43 chr15 62695631 62695704 -38684817 - REP3 LTR ERV 0 562 489 2466 67 0 0 chr15 62695704 62696004 -38684517 - AluY SINE Alu -11 300 1 781 215 21 43 chr15 62696004 62696115 -38684406 - REP3 LTR ERV -73 489 382 392 206 41 0 chr15 62696115 62696188 -38684333 - MER2 DNA MER2_type 0 345 270 1202 133 0 11 chr15 62696194 62696207 -38684314 + AluSg/x SINE Alu 120 132 -180 2232 102 7 0 chr15 62696207 62696511 -38684010 + AluSx SINE Alu 1 306 -6 1202 133 0 11 chr15 62696511 62696677 -38683844 + AluSg/x SINE Alu 132 297 -15 1300 121 6 0 chr15 62696680 62696853 -38683668 + AluSx SINE Alu 1 174 -138 182 264 176 0 chr15 62696971 62697062 -38683459 + MIR SINE MIR 137 243 -19 2108 241 41 48 chr15 62697509 62697775 -38682746 + MER68 LTR ERV1 1 267 -295 2492 71 0 0 chr15 62697775 62698069 -38682452 + AluSg SINE Alu 1 294 -16 2108 241 41 48 chr15 62698069 62698367 -38682154 + MER68 LTR ERV1 267 561 -1 754 201 112 12 chr15 62698426 62698595 -38681926 + AluJo SINE Alu 115 300 -12 237 276 124 0 chr15 62698723 62698828 -38681693 - L1MC4 LINE L1 -131 7911 7794 600 276 87 66 chr15 62698912 62699366 -38681155 - MLT1G3 LTR MaLR 0 555 25 2270 35 38 38 chr15 62699446 62699734 -38680787 + AluY SINE Alu 11 298 -13 761 240 183 42 chr15 62699734 62700143 -38680378 - L1MC4 LINE L1 -1 6358 6418 2385 82 10 0 chr15 62700143 62700449 -38680072 - AluSp SINE Alu -3 310 2 761 240 183 42 chr15 62700449 62700620 -38679901 - L1MC4 LINE L1 60 6419 6274 1237 184 47 49 chr15 62700624 62700917 -38679604 - L1MC4a LINE L1 -11 7797 6033 498 232 152 139 chr15 62700938 62700986 -38679535 - L1MC4 LINE L1 -835 6973 6927 2473 74 0 3 chr15 62700986 62701295 -38679226 - AluY SINE Alu -3 308 1 498 232 152 139 chr15 62701295 62702086 -38678435 - L1MC4 LINE L1 -881 6927 6162 2301 100 7 10 chr15 62702086 62702396 -38678125 - AluSc SINE Alu 0 309 1 498 232 152 139 chr15 62702396 62702619 -38677902 - L1MC4 LINE L1 -1646 6162 5943 2215 118 7 0 chr15 62702752 62703057 -38677464 + AluSq SINE Alu 1 307 -6 1238 134 0 0 chr15 62703058 62703230 -38677291 + AluSg/x SINE Alu 124 295 -15 2128 136 7 3 chr15 62703294 62703604 -38676917 + AluSx SINE Alu 1 311 -1 2301 111 3 0 chr15 62703703 62704009 -38676512 + AluSq SINE Alu 1 307 -6 2135 146 0 3 chr15 62704019 62704327 -38676194 + AluSx SINE Alu 1 307 -5 1377 226 3 20 chr15 62704727 62705033 -38675488 - AluJo SINE Alu -8 304 4 779 202 0 0 chr15 62705047 62705171 -38675350 - FLAM_C SINE Alu -18 125 2 207 0 0 0 chr15 62705662 62705685 -38674836 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1577 182 7 27 chr15 62705687 62705983 -38674538 - AluJo SINE Alu -22 290 1 1897 158 7 0 chr15 62706142 62706433 -38674088 + AluJb SINE Alu 1 293 -19 1777 134 65 10 chr15 62706443 62706734 -38673787 + AluSx SINE Alu 1 307 -5 1305 183 5 5 chr15 62706849 62707073 -38673448 + AluJb SINE Alu 77 300 -12 2190 102 0 10 chr15 62707209 62707503 -38673018 + AluSg SINE Alu 1 291 -19 626 98 0 0 chr15 62707777 62707859 -38672662 + L1MB5 LINE L1 6038 6119 -55 1423 183 49 3 chr15 62707859 62708143 -38672378 - AluJo SINE Alu -2 310 14 264 183 33 0 chr15 62708143 62708203 -38672318 + L1MB5 LINE L1 6113 6174 0 1713 156 20 17 chr15 62709136 62709438 -38671083 - AluJb SINE Alu -8 304 2 36 23 0 0 chr15 62709698 62709741 -38670780 + AT_rich Low_complexity Low_complexity 1 43 0 3439 147 27 56 chr15 62709863 62710524 -38669997 + L1MB3 LINE L1 5460 6101 -82 1898 101 97 4 chr15 62710527 62710795 -38669726 + AluSx SINE Alu 1 293 -19 28 29 0 0 chr15 62710797 62710832 -38669689 + AT_rich Low_complexity Low_complexity 1 35 0 341 163 0 81 chr15 62710832 62710918 -38669603 + L1MB3 LINE L1 6096 6174 -9 2394 73 0 10 chr15 62710918 62711220 -38669301 - AluY SINE Alu -12 299 1 2153 119 3 3 chr15 62711654 62711948 -38668573 - AluSx SINE Alu -18 294 1 2861 19 0 0 chr15 62712951 62713264 -38667257 + AluYb8 SINE Alu 1 313 -5 788 242 0 12 chr15 62714035 62714196 -38666325 + FRAM SINE Alu 1 157 -19 1782 146 50 4 chr15 62714201 62714482 -38666039 + AluJb SINE Alu 2 295 -17 241 195 13 13 chr15 62715354 62715431 -38665090 + (TA)n Simple_repeat Simple_repeat 1 77 0 1164 170 24 89 chr15 62715431 62715678 -38664843 - AluJb SINE Alu -24 288 58 1920 123 21 21 chr15 62715678 62715962 -38664559 - AluSx SINE Alu -28 284 1 257 118 78 0 chr15 62716038 62716089 -38664432 + L1MB8 LINE L1 5297 5351 -949 1327 190 17 0 chr15 62716189 62716421 -38664100 + AluJb SINE Alu 47 282 -30 341 102 0 0 chr15 62716422 62716471 -38664050 - AluSq/x SINE Alu -169 133 85 486 0 0 0 chr15 62716487 62716541 -38663980 + (TAAAA)n Simple_repeat Simple_repeat 4 57 0 3268 160 35 32 chr15 62716541 62716947 -38663574 + L1MB8 LINE L1 5557 5967 -211 2173 113 7 3 chr15 62716947 62717240 -38663281 + AluSg SINE Alu 1 294 -16 3268 160 35 32 chr15 62717240 62717453 -38663068 + L1MB8 LINE L1 5967 6178 0 302 188 25 62 chr15 62717473 62717553 -38662968 + LTR9 LTR ERV1 449 525 -87 2424 102 0 0 chr15 62718163 62718476 -38662045 + AluSq SINE Alu 1 313 0 1509 168 48 21 chr15 62718574 62718709 -38661812 + AluJb SINE Alu 2 132 -180 2499 84 0 0 chr15 62718709 62719018 -38661503 + AluSx SINE Alu 1 309 -3 2306 81 44 0 chr15 62719019 62719316 -38661205 + AluSg SINE Alu 1 310 0 1509 168 48 21 chr15 62719316 62719469 -38661052 + AluJb SINE Alu 131 300 -12 3035 82 12 15 chr15 62719478 62719882 -38660639 + L1PB2 LINE L1 5746 6148 -3 2222 128 3 0 chr15 62720048 62720345 -38660176 - AluSq SINE Alu -14 299 2 302 282 13 0 chr15 62721218 62721296 -38659225 - MER112 DNA MER1_type -14 246 168 1330 155 18 5 chr15 62721307 62721526 -38658995 + AluJb SINE Alu 86 307 -5 538 240 58 7 chr15 62721537 62721691 -38658830 - MER112 DNA MER1_type -95 165 4 2241 104 3 3 chr15 62721857 62722156 -38658365 - AluSc SINE Alu -10 299 1 2344 82 0 16 chr15 62722311 62722615 -38657906 - AluY SINE Alu -12 299 1 2164 114 0 3 chr15 62722627 62722916 -38657605 - AluSq SINE Alu -25 288 1 711 258 96 10 chr15 62723274 62723514 -38657007 + MIR SINE MIR 2 259 -3 2237 112 0 10 chr15 62723775 62724080 -38656441 + AluSg SINE Alu 1 302 -8 1395 177 159 17 chr15 62724289 62724640 -38655881 - L1ME2 LINE L1 -68 6096 5696 1884 144 7 14 chr15 62724640 62724932 -38655589 - AluSx SINE Alu -22 290 1 2376 82 7 0 chr15 62725082 62725416 -38655105 - AluSp SINE Alu 0 336 1 746 228 33 58 chr15 62725428 62725669 -38654852 - MER46C DNA MER2_type -80 258 24 772 229 37 21 chr15 62725984 62726172 -38654349 - MIR SINE MIR -21 241 51 473 130 0 87 chr15 62726184 62726276 -38654245 - AluJ/FRAM SINE Alu -15 297 214 1065 162 61 44 chr15 62726301 62726529 -38653992 - AluJo SINE Alu -52 260 29 521 155 287 31 chr15 62726565 62726694 -38653827 + FRAM SINE Alu 5 166 0 364 292 126 70 chr15 62726904 62727319 -38653202 + L2 LINE L2 2606 3054 -218 2056 126 10 0 chr15 62727358 62727651 -38652870 + AluSx SINE Alu 1 296 -16 1965 109 65 7 chr15 62727653 62727946 -38652575 + AluSg SINE Alu 1 310 0 2241 109 0 0 chr15 62728053 62728355 -38652166 - AluY SINE Alu -9 302 1 1347 164 82 0 chr15 62728730 62728962 -38651559 - AluJb SINE Alu -19 293 43 2134 112 3 7 chr15 62728968 62729263 -38651258 - AluSx SINE Alu -18 294 1 1471 184 59 14 chr15 62729338 62729626 -38650895 - AluJb SINE Alu -11 301 1 2259 117 0 0 chr15 62730212 62730510 -38650011 + AluSx SINE Alu 1 298 -14 33 0 0 0 chr15 62730730 62730763 -38649758 + AT_rich Low_complexity Low_complexity 1 33 0 1346 172 11 42 chr15 62730882 62731143 -38649378 + AluJo SINE Alu 39 291 -21 324 0 0 0 chr15 62731143 62731179 -38649342 + (TG)n Simple_repeat Simple_repeat 2 37 0 1879 135 57 14 chr15 62731299 62731595 -38648926 - AluSx SINE Alu -3 309 1 888 73 9 0 chr15 62731783 62731893 -38648628 + AluSq/x SINE Alu 23 133 -180 2151 91 9 41 chr15 62731897 62732030 -38648491 + AluSc SINE Alu 1 137 -172 2338 105 0 0 chr15 62732030 62732334 -38648187 + AluSc SINE Alu 1 304 -5 1158 99 17 44 chr15 62732337 62732518 -38648003 + AluSp SINE Alu 137 312 -1 4655 132 9 3 chr15 62732518 62733207 -38647314 - MER49 LTR ERV1 -33 890 198 1491 118 0 5 chr15 62733240 62733452 -38647069 - MER49 LTR ERV1 -712 211 1 1717 187 21 3 chr15 62734079 62734368 -38646153 - AluJb SINE Alu -18 294 1 184 267 0 116 chr15 62734500 62734586 -38645935 - MIR3 SINE MIR -25 183 108 236 195 0 0 chr15 62734777 62734818 -38645703 + L1ME3 LINE L1 5447 5487 -2555 1638 127 55 82 chr15 62734852 62735183 -38645338 + AluSx SINE Alu 1 323 0 1707 201 21 23 chr15 62735200 62735584 -38644937 + L1ME3 LINE L1 5506 5888 -274 1084 82 8 0 chr15 62735585 62735719 -38644802 + AluSg1 SINE Alu 1 135 -174 2408 94 3 0 chr15 62735720 62736029 -38644492 + AluSg SINE Alu 1 310 0 808 211 65 41 chr15 62736034 62736280 -38644241 + L1ME3 LINE L1 5904 6155 -7 1619 136 61 14 chr15 62736683 62736962 -38643559 - AluJo SINE Alu -20 292 1 801 164 87 77 chr15 62737480 62737549 -38642972 - MER3 DNA MER1_type 0 209 142 2496 56 23 0 chr15 62737549 62737855 -38642666 + AluSp SINE Alu 1 313 0 801 164 87 77 chr15 62737855 62737992 -38642529 - MER3 DNA MER1_type -67 142 1 267 327 77 19 chr15 62738094 62738198 -38642323 + L2 LINE L2 3143 3252 -20 2583 70 0 0 chr15 62739565 62739878 -38640643 - AluSq SINE Alu 0 313 1 2376 75 3 23 chr15 62740356 62740663 -38639858 + AluSp SINE Alu 1 301 -12 2049 210 69 27 chr15 62741143 62741695 -38638826 - MER90 LTR ERV1 0 575 1 2553 52 3 3 chr15 62741782 62742087 -38638434 + AluY SINE Alu 1 305 -6 248 294 66 22 chr15 62742724 62742860 -38637661 + MIR SINE MIR 71 212 -50 994 365 108 36 chr15 62742935 62743483 -38637038 + L1ME3 LINE L1 4795 5302 -860 15782 107 24 28 chr15 62743483 62743711 -38636810 + Tigger1 DNA MER2_type 1 228 -2190 1606 172 41 21 chr15 62743711 62744002 -38636519 - AluJo SINE Alu -15 297 1 15782 107 24 28 chr15 62744002 62744023 -38636498 + Tigger1 DNA MER2_type 228 248 -2170 1701 161 70 0 chr15 62744023 62744309 -38636212 - AluJb SINE Alu -6 306 1 15782 107 24 28 chr15 62744309 62744490 -38636031 + Tigger1 DNA MER2_type 248 428 -1990 1937 118 45 7 chr15 62744490 62744779 -38635742 + AluSx SINE Alu 1 300 -12 15782 107 24 28 chr15 62744779 62745520 -38635001 + Tigger1 DNA MER2_type 428 1171 -1247 2333 95 0 7 chr15 62745520 62745824 -38634697 + AluSx SINE Alu 1 302 -10 15782 107 24 28 chr15 62745824 62745970 -38634551 + Tigger1 DNA MER2_type 1171 1316 -1102 411 21 0 0 chr15 62745970 62746018 -38634503 + (TA)n Simple_repeat Simple_repeat 2 49 0 15782 107 24 28 chr15 62746018 62747124 -38633397 + Tigger1 DNA MER2_type 1316 2418 0 994 365 108 36 chr15 62747124 62747222 -38633299 + L1ME3 LINE L1 5302 5392 -770 2305 110 0 3 chr15 62747222 62747532 -38632989 - AluSx SINE Alu -3 309 1 994 365 108 36 chr15 62747532 62747893 -38632628 + L1ME3 LINE L1 5392 5826 -336 1455 287 104 21 chr15 62748255 62749220 -38631301 - L2 LINE L2 -22 3291 2243 473 211 48 60 chr15 62749222 62749388 -38631133 - HsTC2 DNA Tc2 -4 1894 1731 1258 215 52 21 chr15 62749388 62749763 -38630758 - MER90 LTR ERV1 0 614 118 577 176 131 17 chr15 62749777 62749953 -38630568 + L1MC4a LINE L1 5754 5949 -1859 2452 87 0 10 chr15 62749960 62750272 -38630249 + AluSc SINE Alu 1 309 0 2570 60 0 0 chr15 62751349 62751651 -38628870 - AluY SINE Alu -8 303 2 547 297 71 4 chr15 62751878 62752117 -38628404 + MIR SINE MIR 8 262 0 1958 149 7 7 chr15 62752363 62752664 -38627857 - AluSx SINE Alu -11 301 1 1645 180 14 17 chr15 62752857 62753151 -38627370 + AluJo SINE Alu 2 294 -18 2390 81 0 0 chr15 62753229 62753524 -38626997 + AluY SINE Alu 1 295 -16 2218 121 3 0 chr15 62753824 62754121 -38626400 + AluSx SINE Alu 1 298 -14 2121 101 14 0 chr15 62754206 62754494 -38626027 + AluSq SINE Alu 1 292 -21 21 0 0 0 chr15 62754496 62754517 -38626004 + AT_rich Low_complexity Low_complexity 1 21 0 725 156 7 59 chr15 62754623 62754758 -38625763 + FLAM_C SINE Alu 2 129 -14 208 188 29 0 chr15 62754758 62754827 -38625694 + (TA)n Simple_repeat Simple_repeat 2 72 0 226 143 36 18 chr15 62754852 62754908 -38625613 + (TA)n Simple_repeat Simple_repeat 2 58 0 761 183 15 0 chr15 62755698 62755829 -38624692 + FLAM_A SINE Alu 1 133 0 2263 112 0 7 chr15 62756111 62756407 -38624114 + AluSx SINE Alu 1 294 -18 2341 89 3 0 chr15 62756726 62757019 -38623502 + AluSp SINE Alu 1 294 -19 1938 171 0 3 chr15 62757894 62758199 -38622322 + AluJb SINE Alu 1 304 -8 1578 161 62 11 chr15 62758199 62758473 -38622048 + AluJb SINE Alu 1 288 -24 32 0 0 0 chr15 62758473 62758505 -38622016 + AT_rich Low_complexity Low_complexity 1 32 0 1340 263 54 30 chr15 62758601 62758694 -38621827 + L1MC/D LINE L1 5270 5359 -2449 2221 123 0 0 chr15 62758694 62758994 -38621527 - AluSx SINE Alu -12 300 1 1340 263 54 30 chr15 62758994 62759441 -38621080 + L1MC/D LINE L1 5359 5823 -1985 398 189 0 27 chr15 62759444 62759518 -38621003 + AluJb SINE Alu 85 156 -146 262 253 0 25 chr15 62759519 62759598 -38620923 + L1MC/D LINE L1 5747 5823 -1985 1209 123 75 57 chr15 62759602 62759814 -38620707 + AluJb SINE Alu 86 301 -11 281 159 16 0 chr15 62759857 62759920 -38620601 + (CA)n Simple_repeat Simple_repeat 1 64 0 2336 89 3 0 chr15 62761374 62761666 -38618855 - AluY SINE Alu -17 294 2 2242 97 0 10 chr15 62762667 62762965 -38617556 - AluSg SINE Alu -15 295 1 928 165 103 26 chr15 62763160 62763354 -38617167 - AluJo SINE Alu -19 293 85 21 0 0 0 chr15 62764295 62764316 -38616205 + AT_rich Low_complexity Low_complexity 1 21 0 317 278 96 9 chr15 62765191 62765306 -38615215 + MIR3 SINE MIR 15 139 -69 301 304 39 10 chr15 62766254 62766356 -38614165 + MIR SINE MIR 47 151 -111 2211 86 7 13 chr15 62766386 62766688 -38613833 + AluSx SINE Alu 1 300 -12 189 0 0 0 chr15 62767069 62767090 -38613431 + (A)n Simple_repeat Simple_repeat 1 21 0 183 42 0 0 chr15 62767168 62767192 -38613329 + (CA)n Simple_repeat Simple_repeat 1 24 0 513 306 0 8 chr15 62767215 62767349 -38613172 - L2 LINE L2 -1 3312 3180 2436 79 0 16 chr15 62767482 62767798 -38612723 - AluY SINE Alu 0 311 1 1475 213 109 11 chr15 62767841 62768187 -38612334 + REP3 LTR ERV 1 382 -180 573 200 11 0 chr15 62768187 62768282 -38612239 + MER2 DNA MER2_type 1 96 -249 1781 163 25 0 chr15 62768467 62768749 -38611772 - AluJo SINE Alu -23 289 1 571 160 0 120 chr15 62768759 62768909 -38611612 - FLAM_A SINE Alu -1 132 1 2133 114 0 48 chr15 62769189 62769505 -38611016 + AluSg SINE Alu 1 301 -9 412 275 31 88 chr15 62769667 62769860 -38610661 + L1MEd LINE L1 447 628 -5491 * 480 221 37 22 chr15 62769854 62769990 -38610531 + L1MEd LINE L1 2307 2444 -3685 2057 112 49 0 chr15 62769990 62770276 -38610245 + AluSq SINE Alu 1 300 -13 545 211 78 33 chr15 62770293 62770473 -38610048 + L1MEd LINE L1 3368 3555 -2574 732 191 23 35 chr15 62770485 62770658 -38609863 - MLT1F LTR MaLR -2 540 370 285 278 156 11 chr15 62771837 62771927 -38608594 + MIR SINE MIR 19 121 -87 23 0 0 0 chr15 62772176 62772199 -38608322 + AT_rich Low_complexity Low_complexity 1 23 0 2228 104 0 0 chr15 62772217 62772517 -38608004 - AluSx SINE Alu 0 303 4 221 0 0 33 chr15 62772518 62772548 -38607973 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 45 37 0 25 chr15 62772548 62772582 -38607939 + AT_rich Low_complexity Low_complexity 1 34 -45 3428 13 0 0 chr15 62772582 62772965 -38607556 - L1PA2 LINE L1 -6 6149 5767 951 37 0 0 chr15 62772965 62773072 -38607449 - U6 snRNA snRNA 0 107 1 45 37 0 25 chr15 62773072 62773117 -38607404 + AT_rich Low_complexity Low_complexity 32 79 0 264 151 19 0 chr15 62773210 62773263 -38607258 + MIR3 SINE MIR 155 208 0 239 200 0 0 chr15 62774340 62774380 -38606141 + U2 snRNA snRNA 4 43 -145 2482 72 0 0 chr15 62774380 62774672 -38605849 + AluY SINE Alu 2 293 -18 523 262 71 18 chr15 62775005 62775173 -38605348 + MIR3 SINE MIR 30 206 -2 3575 118 21 29 chr15 62775964 62776487 -38604034 - MER1A DNA MER1_type -10 519 1 2573 153 123 162 chr15 62776917 62777092 -38603429 - L1MC3 LINE L1 -324 7461 7281 2349 78 14 0 chr15 62777092 62777386 -38603135 + AluY SINE Alu 1 298 -13 2573 153 123 162 chr15 62777386 62777495 -38603026 - L1MC3 LINE L1 -504 7281 7169 318 253 0 42 chr15 62777495 62777590 -38602931 - MLT1F1 LTR MaLR -453 114 24 2573 153 123 162 chr15 62777590 62778166 -38602355 - L1MC3 LINE L1 -616 7169 6543 802 191 0 0 chr15 62779942 62780073 -38600448 - FLAM_A SINE Alu -2 131 1 1584 178 13 26 chr15 62780413 62780717 -38599804 + AluJo SINE Alu 1 300 -12 288 231 130 37 chr15 62780847 62780955 -38599566 + L2 LINE L2 3151 3268 -4 2395 93 3 0 chr15 62781082 62781384 -38599137 + AluSx SINE Alu 1 303 -9 4591 160 63 46 chr15 62781497 62782385 -38598136 - MER21A LTR ERV1 -28 903 1 763 247 0 13 chr15 62783421 62783575 -38596946 + AluJb SINE Alu 138 289 -23 2380 91 0 3 chr15 62783586 62783884 -38596637 + AluSc SINE Alu 1 297 -12 2609 94 3 22 chr15 62784303 62784665 -38595856 - THE1A LTR MaLR 0 355 1 11494 86 27 14 chr15 62784665 62786224 -38594297 - THE1A-int LTR MaLR 0 1580 1 2447 114 6 25 chr15 62786224 62786585 -38593936 - THE1A LTR MaLR 0 355 2 287 217 28 66 chr15 62786891 62786938 -38593583 + L1MEd LINE L1 908 955 -5164 1739 173 13 3 chr15 62786938 62787239 -38593282 + AluJo SINE Alu 1 304 -8 287 217 28 66 chr15 62787239 62787297 -38593224 + L1MEd LINE L1 955 1009 -5110 285 286 77 24 chr15 62787330 62787498 -38593023 + L1M4 LINE L1 4497 4673 -1473 2441 150 23 34 chr15 62787499 62787820 -38592701 + L1MB3 LINE L1 5701 6017 -166 2256 97 17 0 chr15 62787820 62788118 -38592403 - AluSx SINE Alu -8 304 2 2441 150 23 34 chr15 62788118 62788268 -38592253 + L1MB3 LINE L1 6017 6167 -16 1201 114 18 0 chr15 62788268 62788435 -38592086 - AluSq SINE Alu -22 291 122 681 272 91 71 chr15 62788543 62789006 -38591515 + MLT1H LTR MaLR 71 542 -7 1571 267 95 32 chr15 62789794 62790591 -38589930 - L1ME LINE L1 -4934 1327 389 22 56 0 0 chr15 62790727 62790763 -38589758 + AT_rich Low_complexity Low_complexity 1 36 0 1375 184 83 18 chr15 62791607 62791884 -38588637 - AluJo SINE Alu -17 295 1 284 365 47 7 chr15 62791932 62792080 -38588441 + MIR SINE MIR 86 239 -23 525 143 12 0 chr15 62792311 62792395 -38588126 + Tigger4(Zombi) DNA MER2_type 2647 2731 0 269 288 0 0 chr15 62793480 62793553 -38586968 - MIR SINE MIR -99 163 91 1656 153 21 25 chr15 62794218 62794500 -38586021 + AluJo SINE Alu 1 281 -31 275 0 29 0 chr15 62794504 62794539 -38585982 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1917 145 24 0 chr15 62794539 62794829 -38585692 + AluJb SINE Alu 1 297 -15 550 175 9 77 chr15 62794858 62795021 -38585500 + L1ME2 LINE L1 6047 6138 -26 2220 97 3 0 chr15 62795543 62795832 -38584689 - AluSg SINE Alu -20 290 1 180 0 0 0 chr15 62795954 62795974 -38584547 + (A)n Simple_repeat Simple_repeat 1 20 0 709 275 72 0 chr15 62796762 62796998 -38583523 - MIR SINE MIR 0 262 10 23 68 0 0 chr15 62797122 62797166 -38583355 + AT_rich Low_complexity Low_complexity 1 44 0 2649 27 7 0 chr15 62797197 62797496 -38583025 + AluY SINE Alu 1 301 -10 921 110 0 37 chr15 62797660 62797796 -38582725 - FLAM_C SINE Alu -2 131 1 235 250 0 50 chr15 62797797 62797857 -38582664 - L2 LINE L2 -13 3259 3203 21 0 0 0 chr15 62797948 62797969 -38582552 + AT_rich Low_complexity Low_complexity 1 21 0 801 273 113 11 chr15 62799024 62799335 -38581186 + Tigger8 DNA MER2_type 126 481 -185 1989 108 64 27 chr15 62799335 62799631 -38580890 + AluSx SINE Alu 1 307 -5 801 273 113 11 chr15 62799631 62799682 -38580839 + Tigger8 DNA MER2_type 481 525 -141 1650 65 0 99 chr15 62800134 62800396 -38580125 - AluSg SINE Alu -11 299 64 813 53 0 0 chr15 62800399 62800494 -38580027 - AluSg1 SINE Alu -214 95 1 339 282 10 10 chr15 62800695 62800798 -38579723 + L2 LINE L2 3190 3292 -21 302 231 58 109 chr15 62801363 62801408 -38579113 + L1ME3A LINE L1 5815 5861 -309 2633 52 0 3 chr15 62801408 62801717 -38578804 + AluY SINE Alu 1 308 -3 302 231 58 109 chr15 62801717 62801827 -38578694 + L1ME3A LINE L1 5861 5962 -208 1852 153 14 7 chr15 62801870 62802164 -38578357 + AluJo SINE Alu 1 296 -16 447 222 30 0 chr15 62803417 62803516 -38577005 - U13 snRNA snRNA -2 102 1 2328 114 0 0 chr15 62805077 62805385 -38575136 + AluSg SINE Alu 1 308 -2 2268 125 0 0 chr15 62805768 62806064 -38574457 + AluSx SINE Alu 1 296 -16 1889 178 189 11 chr15 62806508 62806968 -38573553 - MLT1F LTR MaLR 0 542 1 2303 114 0 0 chr15 62807624 62807930 -38572591 - AluSx SINE Alu -6 306 1 2238 110 0 0 chr15 62808164 62808455 -38572066 + AluSx SINE Alu 1 291 -21 937 292 189 17 chr15 62808955 62809178 -38571343 - L2 LINE L2 -224 3048 2865 559 70 0 70 chr15 62809178 62809264 -38571257 + MADE1 DNA Mariner 1 80 0 937 292 189 17 chr15 62809264 62809305 -38571216 - L2 LINE L2 -407 2865 2832 2398 93 0 0 chr15 62809305 62809605 -38570916 - AluSc SINE Alu -9 300 1 937 292 189 17 chr15 62809605 62810073 -38570448 - L2 LINE L2 -440 2832 2188 375 241 103 0 chr15 62810123 62810239 -38570282 - L2 LINE L2 -3 3269 3142 672 199 135 26 chr15 62810241 62810397 -38570124 - MER69A DNA AcHobo -2 175 3 262 294 76 76 chr15 62810397 62810635 -38569886 - L2 LINE L2 -121 3151 2914 1331 179 45 39 chr15 62810643 62810853 -38569668 + MER33 DNA MER1_type 15 229 -2356 2250 115 0 0 chr15 62810853 62811149 -38569372 + AluSx SINE Alu 1 296 -16 1331 179 45 39 chr15 62811149 62811246 -38569275 + MER33 DNA MER1_type 229 324 0 261 83 0 0 chr15 62812216 62812252 -38568269 + (A)n Simple_repeat Simple_repeat 1 36 0 203 194 0 0 chr15 62812278 62812314 -38568207 + A-rich Low_complexity Low_complexity 1 36 0 298 277 52 58 chr15 62812317 62812472 -38568049 + MIR SINE MIR 63 216 -46 1591 96 14 0 chr15 62812679 62812888 -38567633 + AluSc SINE Alu 1 212 -97 422 62 0 0 chr15 62812888 62812952 -38567569 + AluSc SINE Alu 246 309 0 193 298 0 75 chr15 62813359 62813453 -38567068 + L2 LINE L2 3186 3272 0 693 191 7 14 chr15 62813650 62813791 -38566730 + AluJo SINE Alu 2 141 -171 1834 152 11 0 chr15 62813794 62814064 -38566457 + AluJb SINE Alu 16 288 -24 2025 98 0 0 chr15 62814070 62814325 -38566196 + AluSq SINE Alu 1 255 -58 330 26 0 0 chr15 62814337 62814376 -38566145 + (TAA)n Simple_repeat Simple_repeat 2 40 0 363 312 187 23 chr15 62815036 62815389 -38565132 - L2 LINE L2 0 3272 2862 1451 102 5 5 chr15 62816115 62816312 -38564209 + AluSq SINE Alu 1 197 -116 216 0 0 0 chr15 62817929 62817953 -38562568 + (TG)n Simple_repeat Simple_repeat 1 24 0 1693 176 14 11 chr15 62817955 62818234 -38562287 - AluJo SINE Alu -32 280 1 1411 220 43 43 chr15 62818539 62819003 -38561518 - L1MC5 LINE L1 -37 7924 7461 1569 151 13 0 chr15 62819410 62819642 -38560879 + AluJo SINE Alu 29 263 -49 243 0 0 0 chr15 62819656 62819683 -38560838 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2057 128 7 0 chr15 62819849 62820137 -38560384 + AluSx SINE Alu 1 290 -22 10959 51 6 6 chr15 62820180 62822327 -38558194 - L1PA6 LINE L1 -4 6150 4005 811 159 0 0 chr15 62822328 62822454 -38558067 - FLAM_C SINE Alu -6 127 2 197 132 26 0 chr15 62822664 62822702 -38557819 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 492 188 174 65 chr15 62822717 62822936 -38557585 - L1MC4a LINE L1 -178 5943 5703 427 258 48 16 chr15 62822939 62823063 -38557458 - L2 LINE L2 -508 2806 2679 21 36 0 0 chr15 62823989 62824017 -38556504 + AT_rich Low_complexity Low_complexity 1 28 0 56 29 0 0 chr15 62824499 62824569 -38555952 + AT_rich Low_complexity Low_complexity 1 70 0 438 270 0 68 chr15 62824575 62824723 -38555798 - L2 LINE L2 -18 3295 3158 511 204 59 40 chr15 62824819 62824971 -38555550 - MIR SINE MIR -33 229 75 235 320 13 0 chr15 62825041 62825119 -38555402 + L3b LINE CR1 1310 1388 -195 399 261 94 7 chr15 62826851 62826989 -38553532 + MIR3 SINE MIR 35 184 -24 2237 125 0 3 chr15 62827188 62827492 -38553029 - AluSx SINE Alu -9 303 1 30 45 0 0 chr15 62827543 62827587 -38552934 + AT_rich Low_complexity Low_complexity 1 44 0 312 267 160 0 chr15 62827715 62827846 -38552675 - MIR SINE MIR -108 154 3 654 304 20 5 chr15 62830608 62830812 -38549709 - MIR SINE MIR -9 253 47 272 182 0 0 chr15 62831314 62831358 -38549163 - FRAM/FAM SINE Alu -127 39 1 492 237 147 19 chr15 62831671 62831827 -38548694 + MIR3 SINE MIR 23 198 -10 354 287 21 9 chr15 62831925 62832040 -38548481 - MIR SINE MIR -88 120 3 1857 145 10 14 chr15 62832477 62832767 -38547754 - AluJo SINE Alu -23 289 1 362 184 132 18 chr15 62833047 62833161 -38547360 - MIR SINE MIR -58 204 78 196 358 0 0 chr15 62833186 62833253 -38547268 + MIR SINE MIR 37 103 -105 852 194 0 0 chr15 62833451 62833595 -38546926 - MER58B DNA MER1_type -1 340 197 1262 174 3 96 chr15 62834475 62834757 -38545764 - AluJb SINE Alu -14 298 43 2179 126 0 3 chr15 62834913 62835214 -38545307 + AluSx SINE Alu 1 300 -12 1756 154 7 4 chr15 62836256 62836529 -38543992 + AluJb SINE Alu 12 285 -27 279 54 0 0 chr15 62836540 62836577 -38543944 + (CA)n Simple_repeat Simple_repeat 1 37 0 321 243 14 0 chr15 62839293 62839367 -38541154 + MIR SINE MIR 78 152 -110 2131 106 43 13 chr15 62840077 62840200 -38540321 + AluSx SINE Alu 1 119 -193 2472 76 0 0 chr15 62840200 62840501 -38540020 + AluSx SINE Alu 1 301 -11 2131 106 43 13 chr15 62840501 62840680 -38539841 + AluSx SINE Alu 119 312 0 4535 160 54 30 chr15 62841359 62841581 -38538940 + L1MB5 LINE L1 4820 5035 -1139 611 203 119 0 chr15 62841581 62841699 -38538822 + FLAM_A SINE Alu 1 132 -1 4535 160 54 30 chr15 62841699 62842794 -38537727 + L1MB5 LINE L1 5035 6161 -13 26 0 0 0 chr15 62842837 62842863 -38537658 + AT_rich Low_complexity Low_complexity 1 26 0 210 171 0 0 chr15 62844279 62844320 -38536201 + (TA)n Simple_repeat Simple_repeat 2 42 0 1050 152 136 0 chr15 62844343 62844527 -38535994 + MER3 DNA MER1_type 1 209 0 203 303 0 30 chr15 62845188 62845254 -38535267 - L2 LINE L2 0 3313 3250 487 238 152 6 chr15 62845294 62845458 -38535063 - MIR SINE MIR -3 259 72 2231 211 198 66 chr15 62845758 62846801 -38533720 + HAL1 LINE L1 1068 1972 -535 1784 167 24 7 chr15 62846801 62847095 -38533426 + AluJb SINE Alu 1 299 -13 2231 211 198 66 chr15 62847095 62847108 -38533413 + HAL1 LINE L1 1972 1982 -525 2048 131 0 3 chr15 62847108 62847426 -38533095 + AluSx SINE Alu 1 317 0 2231 211 198 66 chr15 62847426 62847485 -38533036 + HAL1 LINE L1 1982 2032 -475 2117 124 0 16 chr15 62847485 62847791 -38532730 + AluSx SINE Alu 1 301 -11 2231 211 198 66 chr15 62847791 62847875 -38532646 + HAL1 LINE L1 2032 2431 -76 197 129 0 0 chr15 62847905 62847936 -38532585 - MIR SINE MIR -85 177 147 290 316 11 11 chr15 62847966 62848061 -38532460 + MIR SINE MIR 168 262 0 239 88 29 0 chr15 62848268 62848302 -38532219 - MER58 DNA MER1_type 0 2420 2386 1718 159 0 0 chr15 62848302 62848560 -38531961 - AluJb SINE Alu -54 258 1 1520 126 25 35 chr15 62848561 62848846 -38531675 - L1MA5 LINE L1 -119 6181 5900 590 299 157 20 chr15 62848888 62849290 -38531231 + L2 LINE L2 2172 2628 -686 200 340 77 61 chr15 62849539 62849836 -38530685 + L2 LINE L2 2861 3162 -110 251 281 134 61 chr15 62849916 62850378 -38530143 - L2 LINE L2 -840 2474 1979 1106 203 25 13 chr15 62851408 62851645 -38528876 + MIR SINE MIR 6 245 -17 362 255 157 0 chr15 62851667 62851769 -38528752 - MIR3 SINE MIR -49 159 42 1667 164 20 33 chr15 62851888 62852192 -38528329 + AluJb SINE Alu 1 300 -12 1513 132 45 30 chr15 62852684 62852950 -38527571 + L1MB8 LINE L1 5900 6169 -9 2368 84 0 31 chr15 62853318 62853638 -38526883 - AluY SINE Alu -1 310 1 272 128 21 21 chr15 62854223 62854270 -38526251 - L2 LINE L2 -3 3310 3264 316 303 110 7 chr15 62855336 62855491 -38525030 - L1ME4a LINE L1 -40 6081 5911 2276 88 24 0 chr15 62855506 62855800 -38524721 - AluSp SINE Alu -12 301 1 367 328 8 17 chr15 62856237 62856356 -38524165 - L2 LINE L2 0 3313 3196 239 224 0 20 chr15 62857256 62857305 -38523216 + polypurine Low_complexity Low_complexity 3 50 0 312 369 19 0 chr15 62857505 62857662 -38522859 + MIR SINE MIR 40 199 -63 1964 123 3 11 chr15 62859232 62859538 -38520983 + AluSx SINE Alu 1 304 0 2014 91 57 0 chr15 62859548 62859853 -38520668 + AluSc SINE Alu 1 320 0 257 208 0 0 chr15 62861382 62861430 -38519091 + MIR3 SINE MIR 151 198 -10 783 198 124 37 chr15 62861524 62861741 -38518780 - MIR SINE MIR -4 258 23 189 261 0 0 chr15 62862063 62862109 -38518412 + MIR SINE MIR 189 234 -28 424 299 120 0 chr15 62862411 62862578 -38517943 - MER117 DNA MER1_type 0 197 11 388 181 53 21 chr15 62862588 62862682 -38517839 - MIR3 SINE MIR -52 156 60 350 268 102 40 chr15 62863504 62863655 -38516866 - MIR SINE MIR -56 152 32 1115 76 0 0 chr15 62864700 62864832 -38515689 - AluSc SINE Alu -177 132 1 212 301 101 92 chr15 62864842 62865188 -38515333 + L2 LINE L2 2918 3266 -6 2374 92 7 0 chr15 62865651 62865955 -38514566 + AluSx SINE Alu 1 306 -6 283 232 152 29 chr15 62866263 62866401 -38514120 + L1MC5 LINE L1 7340 7494 -467 302 218 118 65 chr15 62866775 62867037 -38513484 + L1MC5 LINE L1 7452 7727 -234 * 641 205 100 16 chr15 62867020 62867210 -38513311 + L1ME3A LINE L1 5891 6096 -74 1717 134 108 0 chr15 62867233 62867502 -38513019 + AluJb SINE Alu 1 298 -14 732 202 42 71 chr15 62867544 62867782 -38512739 + L1MC5 LINE L1 7694 7924 -37 707 193 80 0 chr15 62867901 62868051 -38512470 + MER58C DNA MER1_type 52 213 -2 845 228 145 42 chr15 62868152 62868894 -38511627 + L1MC4a LINE L1 5111 5419 -909 234 105 0 0 chr15 62868894 62868932 -38511589 + (TA)n Simple_repeat Simple_repeat 2 39 0 845 228 145 42 chr15 62868932 62869119 -38511402 + L1MC4a LINE L1 5419 5585 -743 668 136 34 17 chr15 62869730 62869848 -38510673 + AluSg/x SINE Alu 185 304 -8 708 177 51 63 chr15 62870196 62870327 -38510194 + MER5B DNA MER1_type 5 135 -43 2423 68 0 0 chr15 62870327 62870623 -38509898 + AluY SINE Alu 1 296 -15 708 177 51 63 chr15 62870623 62870666 -38509855 + MER5B DNA MER1_type 135 177 -1 2066 106 0 62 chr15 62870828 62871149 -38509372 - AluSg SINE Alu -9 301 1 629 151 9 38 chr15 62871160 62871266 -38509255 - FLAM_A SINE Alu -20 122 20 431 209 74 117 chr15 62871323 62871455 -38509066 - MER5A DNA MER1_type 0 189 56 2201 110 14 0 chr15 62871455 62871747 -38508774 - AluSg SINE Alu -14 296 1 431 209 74 117 chr15 62871747 62871798 -38508723 - MER5A DNA MER1_type -133 56 4 469 299 28 56 chr15 62871854 62872068 -38508453 + MIR SINE MIR 42 249 -13 826 320 259 10 chr15 62872105 62872595 -38507926 + L3 LINE CR1 901 1512 -65 344 299 0 20 chr15 62872791 62872938 -38507583 + GA-rich Low_complexity Low_complexity 1 144 0 639 103 0 0 chr15 62873076 62873173 -38507348 + (GGA)n Simple_repeat Simple_repeat 2 98 0 251 321 136 62 chr15 62874472 62874634 -38505887 + L2 LINE L2 3074 3247 -25 437 306 34 7 chr15 62875926 62876073 -38504448 + MIR SINE MIR 19 169 -93 981 82 5 144 chr15 62877052 62877246 -38503275 - AluSp SINE Alu -10 303 137 21 0 0 0 chr15 62877332 62877353 -38503168 + AT_rich Low_complexity Low_complexity 1 21 0 640 268 47 30 chr15 62877566 62877801 -38502720 - MARNA DNA Mariner -262 324 86 1962 146 3 19 chr15 62879211 62879520 -38501001 - AluJb SINE Alu -8 304 1 2430 50 7 10 chr15 62879709 62880011 -38500510 + AluY SINE Alu 1 301 -10 1223 141 50 0 chr15 62880870 62881068 -38499453 - MER46A DNA MER2_type -1 235 28 2005 138 0 28 chr15 62881672 62881992 -38498529 - AluJo SINE Alu -1 311 1 29 0 0 0 chr15 62883716 62883745 -38496776 + AT_rich Low_complexity Low_complexity 1 29 0 252 143 0 0 chr15 62885506 62885548 -38494973 + (TA)n Simple_repeat Simple_repeat 1 42 0 2242 100 3 10 chr15 62885548 62885858 -38494663 - AluSq SINE Alu -5 308 1 240 260 30 30 chr15 62885880 62885980 -38494541 - L1ME LINE L1 -1299 5241 5142 1768 176 0 7 chr15 62886005 62886301 -38494220 - AluJb SINE Alu -18 294 1 1084 184 0 5 chr15 62886360 62886566 -38493955 - L1MB7 LINE L1 -19 6165 5961 25 65 0 0 chr15 62887852 62887898 -38492623 + AT_rich Low_complexity Low_complexity 1 46 0 2971 148 60 2 chr15 62888431 62888951 -38491570 - MER44D DNA MER2_type 0 605 1 978 192 0 0 chr15 62888982 62889149 -38491372 + FRAM SINE Alu 1 167 -9 2271 107 0 0 chr15 62889399 62889698 -38490823 + AluSc SINE Alu 1 299 -10 1708 145 0 0 chr15 62890560 62890815 -38489706 - AluJo SINE Alu -14 298 44 1998 120 0 0 chr15 62890915 62891182 -38489339 + AluSx SINE Alu 32 298 -14 240 283 142 8 chr15 62891317 62891437 -38489084 - L2 LINE L2 0 3272 3137 349 245 57 9 chr15 62892871 62892977 -38487544 + MER5C DNA MER1_type 14 124 -200 362 163 10 82 chr15 62893005 62893103 -38487418 + MER5C DNA MER1_type 234 324 0 2265 104 0 0 chr15 62893737 62894035 -38486486 - AluSx SINE Alu -14 298 1 1429 176 81 35 chr15 62894688 62894972 -38485549 + AluJo SINE Alu 1 297 -15 2099 91 11 7 chr15 62895215 62895500 -38485021 - AluSc SINE Alu -17 292 7 1856 149 10 0 chr15 62895715 62896003 -38484518 - AluSx SINE Alu -21 291 1 237 256 111 53 chr15 62896122 62896384 -38484137 - L1P LINE L1 -1135 5011 4735 2246 97 10 0 chr15 62896422 62896722 -38483799 - AluSq SINE Alu -10 303 1 321 306 87 73 chr15 62896919 62897193 -38483328 - L1ME LINE L1 -1662 4878 4609 1924 149 10 3 chr15 62897193 62897482 -38483039 - AluJb SINE Alu -19 293 3 321 306 87 73 chr15 62897482 62897592 -38482929 - L1ME LINE L1 -1931 4609 4502 2161 99 0 23 chr15 62897592 62897895 -38482626 - AluY SINE Alu -15 296 1 321 306 87 73 chr15 62897895 62897998 -38482523 - L1ME LINE L1 -2038 4502 4364 1408 160 9 0 chr15 62898036 62898249 -38482272 - AluJb SINE Alu -23 289 75 250 284 81 0 chr15 62898878 62898952 -38481569 - HAL1 LINE L1 -2427 80 1 2366 135 71 9 chr15 62899180 62899601 -38480920 - Tigger1 DNA MER2_type 0 2418 1972 * 11083 118 32 32 chr15 62899574 62900066 -38480455 - Tigger1 DNA MER2_type -586 1832 1341 1665 176 34 7 chr15 62900066 62900361 -38480160 - AluSx SINE Alu -8 304 2 11083 118 32 32 chr15 62900361 62901699 -38478822 - Tigger1 DNA MER2_type -1076 1342 2 24 0 0 0 chr15 62901708 62901732 -38478789 + AT_rich Low_complexity Low_complexity 1 24 0 1323 213 108 2 chr15 62901746 62902210 -38478311 - L1ME LINE L1 -2853 3687 3175 3478 199 55 21 chr15 62902221 62903313 -38477208 - L1MB8 LINE L1 -9 6169 5115 2209 110 0 7 chr15 62903313 62903621 -38476900 - AluSq SINE Alu -7 306 1 2261 79 0 7 chr15 62903626 62903918 -38476603 - AluY SINE Alu -17 294 5 3478 199 55 21 chr15 62903918 62903992 -38476529 - L1MB8 LINE L1 -1066 5112 4966 830 127 0 3 chr15 62904038 62904229 -38476292 + MER2 DNA MER2_type 96 345 0 1949 220 20 18 chr15 62904231 62904726 -38475795 - L1MB8 LINE L1 -1202 4944 4449 722 274 115 0 chr15 62904719 62905059 -38475462 - L1ME LINE L1 -3357 3183 2805 * 645 172 0 43 chr15 62905069 62905185 -38475336 - FLAM_A SINE Alu -20 122 12 1454 175 11 57 chr15 62905217 62905497 -38475024 - AluJo SINE Alu -45 267 1 1407 258 118 57 chr15 62905501 62907201 -38473320 - L1ME LINE L1 -4102 2619 799 382 248 147 7 chr15 62907270 62907453 -38473068 - L1ME LINE L1 -5915 615 57 515 237 156 0 chr15 62907460 62907646 -38472875 - L1MCc LINE L1 -4624 2317 2103 330 247 87 32 chr15 62907628 62907912 -38472609 - L1MCc LINE L1 -4892 1531 1279 * 250 294 0 0 chr15 62910100 62910151 -38470370 - L2 LINE L2 -12 3260 3210 347 335 40 33 chr15 62910177 62910328 -38470193 - MIR SINE MIR -54 154 2 27 73 0 0 chr15 62910329 62910384 -38470137 + AT_rich Low_complexity Low_complexity 1 55 0 817 157 0 50 chr15 62910457 62910597 -38469924 - FLAM_C SINE Alu 0 133 1 714 186 129 36 chr15 62911393 62911587 -38468934 + MER58C DNA MER1_type 1 212 -3 458 295 94 90 chr15 62912000 62912434 -38468087 + L2 LINE L2 2874 3309 -4 27 49 0 0 chr15 62912476 62912517 -38468004 + AT_rich Low_complexity Low_complexity 1 41 0 2188 120 0 0 chr15 62912666 62912958 -38467563 + AluSx SINE Alu 6 297 -15 22 0 0 0 chr15 62913418 62913440 -38467081 + AT_rich Low_complexity Low_complexity 1 22 0 1565 186 24 26 chr15 62913686 62914025 -38466496 - MER58B DNA MER1_type -3 338 1 217 295 74 74 chr15 62914248 62914370 -38466151 + MIR SINE MIR 30 151 -111 26 0 0 0 chr15 62914396 62914422 -38466099 + AT_rich Low_complexity Low_complexity 1 26 0 632 117 19 19 chr15 62915328 62915431 -38465090 - U13 snRNA snRNA -1 103 1 23 0 0 0 chr15 62916350 62916373 -38464148 + AT_rich Low_complexity Low_complexity 1 23 0 1766 151 0 56 chr15 62916464 62916769 -38463752 + AluJo SINE Alu 1 288 -24 2244 122 0 3 chr15 62917221 62917532 -38462989 - AluSx SINE Alu -2 310 1 399 174 43 12 chr15 62918019 62918180 -38462341 + (TA)n Simple_repeat Simple_repeat 1 166 0 1973 145 7 0 chr15 62918182 62918472 -38462049 - AluJb SINE Alu -20 292 1 713 176 28 66 chr15 62918499 62918681 -38461840 - L1MD3 LINE L1 -9 7986 7812 30 77 0 0 chr15 62918868 62918933 -38461588 + AT_rich Low_complexity Low_complexity 1 65 0 26 30 0 0 chr15 62919700 62919733 -38460788 + AT_rich Low_complexity Low_complexity 1 33 0 1981 131 3 33 chr15 62919779 62920084 -38460437 + AluJb SINE Alu 1 296 -16 1606 198 3 22 chr15 62920475 62920789 -38459732 + AluJo SINE Alu 1 308 -4 842 220 0 7 chr15 62922179 62922329 -38458192 + FAM SINE Alu 1 149 -36 1084 196 14 14 chr15 62922865 62923084 -38457437 - AluJb SINE Alu -8 304 86 2165 110 0 3 chr15 62923095 62923386 -38457135 - AluSx SINE Alu -22 290 1 24 0 0 0 chr15 62923415 62923439 -38457082 + AT_rich Low_complexity Low_complexity 1 24 0 193 270 284 0 chr15 62923978 62924052 -38456469 + L2 LINE L2 3137 3231 -41 651 211 160 64 chr15 62924765 62924942 -38455579 + L1MC4a LINE L1 5739 5898 -1910 441 0 0 0 chr15 62924942 62924991 -38455530 + (CA)n Simple_repeat Simple_repeat 2 50 0 651 211 160 64 chr15 62924991 62925003 -38455518 + L1MC4a LINE L1 5898 5907 -1901 2366 60 11 0 chr15 62925003 62925288 -38455233 - AluSc SINE Alu -21 288 1 651 211 160 64 chr15 62925288 62925472 -38455049 + L1MC4a LINE L1 5907 6149 -1659 24 32 0 0 chr15 62925537 62925568 -38454953 + AT_rich Low_complexity Low_complexity 1 31 0 300 284 68 54 chr15 62926036 62926184 -38454337 + L1ME1 LINE L1 5765 5914 -207 2071 135 3 0 chr15 62926184 62926480 -38454041 - AluSx SINE Alu -15 297 1 1822 156 0 40 chr15 62926501 62926802 -38453719 - AluJo SINE Alu -22 290 2 2243 81 40 3 chr15 62927918 62928214 -38452307 + AluSp SINE Alu 1 307 -6 207 0 0 0 chr15 62928214 62928237 -38452284 + (TA)n Simple_repeat Simple_repeat 2 24 0 1834 199 66 27 chr15 62929178 62929586 -38450935 + MSTB LTR MaLR 1 424 -2 1547 192 34 0 chr15 62929723 62930015 -38450506 + AluJb SINE Alu 9 310 -2 360 179 205 43 chr15 62930132 62930249 -38450272 + L1ME1 LINE L1 6026 6161 -5 503 146 85 123 chr15 62930329 62930459 -38450062 - FLAM_A SINE Alu -8 125 1 1829 240 72 38 chr15 62931423 62932074 -38448447 - L1MC4 LINE L1 -132 7910 7238 2092 204 91 49 chr15 62932075 62932624 -38447897 - L1MC4 LINE L1 -966 7076 6499 2526 59 0 7 chr15 62932624 62932929 -38447592 + AluY SINE Alu 1 303 -8 2092 204 91 49 chr15 62932929 62932971 -38447550 - L1MC4 LINE L1 -1543 6499 6460 220 313 110 66 chr15 62934160 62934342 -38446179 - MIR3 SINE MIR -3 205 16 24 32 0 0 chr15 62934450 62934481 -38446040 + AT_rich Low_complexity Low_complexity 1 31 0 413 301 94 127 chr15 62934574 62934739 -38445782 + L2 LINE L2 2857 3026 -246 6330 30 0 0 chr15 62934739 62935477 -38445044 - L1PA3 LINE L1 0 6155 5418 413 301 94 127 chr15 62935477 62935737 -38444784 + L2 LINE L2 3026 3268 -4 575 195 97 9 chr15 62936737 62936850 -38443671 + FLAM_C SINE Alu 1 123 -20 2309 112 0 6 chr15 62937260 62937574 -38442947 - AluSx SINE Alu 0 312 1 21 71 0 0 chr15 62937622 62937664 -38442857 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr15 62937819 62937840 -38442681 + AT_rich Low_complexity Low_complexity 1 21 0 810 194 0 35 chr15 62937932 62938102 -38442419 + L1MC4 LINE L1 7322 7485 -557 814 151 8 0 chr15 62938102 62938221 -38442300 + FLAM_C SINE Alu 1 120 -23 743 243 149 18 chr15 62938372 62938714 -38441807 + L1MC4 LINE L1 7482 7868 -174 2326 107 0 0 chr15 62938865 62939163 -38441358 - AluSx SINE Alu -14 298 1 265 330 46 46 chr15 62939164 62939273 -38441248 + MIR SINE MIR 42 150 -58 315 0 0 0 chr15 62939399 62939434 -38441087 + (TA)n Simple_repeat Simple_repeat 2 36 0 893 138 0 0 chr15 62939434 62939564 -38440957 - AluJb SINE Alu -182 130 1 862 153 0 0 chr15 62939957 62940081 -38440440 - FRAM SINE Alu -20 156 33 1199 136 25 35 chr15 62940242 62940441 -38440080 + AluJo SINE Alu 104 300 -12 2330 101 10 0 chr15 62940443 62940741 -38439780 + AluSx SINE Alu 8 308 -4 246 354 76 21 chr15 62941187 62941331 -38439190 + L2 LINE L2 3121 3272 0 2068 120 20 0 chr15 62941969 62942270 -38438251 + AluSx SINE Alu 1 307 -5 867 167 0 0 chr15 62942413 62942545 -38437976 - AluSq/x SINE Alu -181 132 1 1964 125 7 3 chr15 62942646 62942935 -38437586 + AluSg SINE Alu 1 290 -20 663 169 0 8 chr15 62943388 62943506 -38437015 - Tigger1 DNA MER2_type 0 2418 2302 2210 102 10 0 chr15 62943509 62943803 -38436718 + AluSg SINE Alu 1 297 -13 580 248 0 0 chr15 62943884 62944009 -38436512 + FLAM_A SINE Alu 10 134 -8 1720 122 31 0 chr15 62944066 62944321 -38436200 + AluSx SINE Alu 1 263 -49 2034 140 0 3 chr15 62945302 62945594 -38434927 - AluSx SINE Alu -21 291 1 2185 91 7 3 chr15 62945674 62945986 -38434535 - AluSx SINE Alu 0 313 1 433 245 86 34 chr15 62946159 62946392 -38434129 + L1ME4a LINE L1 5611 5855 -266 2366 86 0 3 chr15 62946703 62947004 -38433517 - AluSg SINE Alu -10 300 1 385 269 62 0 chr15 62947300 62947445 -38433076 + MER103 DNA DNA 11 164 -2 641 135 0 0 chr15 62947589 62947678 -38432843 + AluJ/FLAM SINE Alu 1 89 -223 364 224 42 52 chr15 62947874 62947912 -38432609 - L1ME4a LINE L1 -2 6119 6082 1693 169 11 0 chr15 62947912 62948190 -38432331 + AluJb SINE Alu 25 305 -7 364 224 42 52 chr15 62948190 62948343 -38432178 - L1ME4a LINE L1 -39 6082 5930 972 162 0 0 chr15 62948506 62948654 -38431867 - FRAM SINE Alu -19 157 10 1239 123 18 0 chr15 62949186 62949357 -38431164 + AluJo SINE Alu 1 174 -138 22 35 0 0 chr15 62949785 62949814 -38430707 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr15 62950010 62950031 -38430490 + AT_rich Low_complexity Low_complexity 1 21 0 340 228 80 80 chr15 62952187 62952349 -38428172 + MIR SINE MIR 101 262 0 199 272 37 62 chr15 62952513 62952594 -38427927 - L2 LINE L2 -63 3250 3172 1242 130 5 15 chr15 62952649 62952849 -38427672 + AluJb SINE Alu 1 198 -114 1177 159 54 101 chr15 62952949 62953075 -38427446 - AluJo SINE Alu -47 265 135 1535 145 0 0 chr15 62953075 62953289 -38427232 - AluSg/x SINE Alu -14 296 83 1177 159 54 101 chr15 62953289 62953319 -38427202 - AluJo SINE Alu -177 135 105 207 0 0 0 chr15 62953319 62953342 -38427179 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1177 159 54 101 chr15 62953342 62953461 -38427060 - AluJo SINE Alu -207 105 2 352 194 0 0 chr15 62953553 62953625 -38426896 - AluJ/FLAM SINE Alu -230 72 1 559 260 165 0 chr15 62954096 62954296 -38426225 - MIR SINE MIR -1 261 29 338 358 116 52 chr15 62954408 62955310 -38425211 - L2 LINE L2 -192 3080 2100 186 366 21 0 chr15 62955374 62955467 -38425054 - L2 LINE L2 -1410 1904 1810 300 271 164 29 chr15 62955609 62955890 -38424631 + L2 LINE L2 2847 3165 -148 650 254 18 146 chr15 62955894 62956041 -38424480 + MIR SINE MIR 1 97 -165 189 107 0 0 chr15 62956041 62956069 -38424452 + (CA)n Simple_repeat Simple_repeat 2 29 0 650 254 18 146 chr15 62956069 62956201 -38424320 + MIR SINE MIR 97 244 -18 26 0 0 0 chr15 62956513 62956539 -38423982 + AT_rich Low_complexity Low_complexity 1 26 0 3377 202 89 38 chr15 62956551 62957977 -38422544 + L1MC3 LINE L1 6278 7777 -8 1846 113 84 7 chr15 62958288 62958562 -38421959 + AluSx SINE Alu 1 295 -17 1747 160 48 14 chr15 62958641 62958934 -38421587 + AluJb SINE Alu 1 303 -9 21 57 0 0 chr15 62958975 62959010 -38421511 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr15 62959077 62959099 -38421422 + AT_rich Low_complexity Low_complexity 1 22 0 628 271 55 7 chr15 62959453 62959743 -38420778 + L1ME3A LINE L1 5585 5889 -295 198 244 0 0 chr15 62959826 62959871 -38420650 - MIR SINE MIR -33 229 185 921 136 0 0 chr15 62959871 62960003 -38420518 + FLAM_C SINE Alu 1 132 -1 705 264 19 6 chr15 62960029 62960188 -38420333 - MIR SINE MIR -65 197 37 25 31 0 0 chr15 62960444 62960476 -38420045 + AT_rich Low_complexity Low_complexity 1 32 0 198 354 15 15 chr15 62961235 62961300 -38419221 + L2 LINE L2 3168 3232 -40 288 117 0 5 chr15 62961501 62961553 -38418968 - Alu SINE Alu -3 305 261 1361 91 21 0 chr15 62961663 62961850 -38418671 - AluSp SINE Alu -122 191 1 767 296 66 16 chr15 62961850 62962167 -38418354 - L1MEd LINE L1 -5542 577 245 734 138 0 9 chr15 62962171 62962280 -38418241 + FLAM_C SINE Alu 4 111 -32 304 289 69 57 chr15 62962312 62962471 -38418050 - L1MEd LINE L1 -5862 257 97 2278 84 0 3 chr15 62962491 62962799 -38417722 - AluSq SINE Alu 0 307 1 1914 168 3 10 chr15 62963772 62964069 -38416452 - AluJo SINE Alu -17 295 1 4071 165 65 12 chr15 62964147 62965110 -38415411 - L1MB8 LINE L1 -13 6165 5152 281 275 88 11 chr15 62965121 62965212 -38415309 - MIR SINE MIR -140 122 25 2144 147 3 0 chr15 62965419 62965731 -38414790 + AluSp SINE Alu 1 313 0 2155 111 0 27 chr15 62965894 62966191 -38414330 + AluSx SINE Alu 1 289 -23 22 0 0 0 chr15 62966202 62966224 -38414297 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr15 62966619 62966647 -38413874 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr15 62966897 62966923 -38413598 + AT_rich Low_complexity Low_complexity 1 26 0 288 0 0 0 chr15 62967239 62967271 -38413250 + (T)n Simple_repeat Simple_repeat 1 32 0 2532 269 159 19 chr15 62967463 62968426 -38412095 + L2 LINE L2 1534 2631 -683 568 221 192 6 chr15 62968428 62968600 -38411921 - MER58C DNA MER1_type 0 215 12 693 204 40 0 chr15 62968605 62968757 -38411764 + L2 LINE L2 2628 2785 -529 22 70 0 0 chr15 62968995 62969038 -38411483 + AT_rich Low_complexity Low_complexity 1 43 0 2288 138 5 8 chr15 62969046 62969416 -38411105 - L1PA16 LINE L1 0 6166 5798 450 260 131 51 chr15 62969497 62969908 -38410613 - L1MC/D LINE L1 -1992 5816 5373 332 291 45 30 chr15 62969955 62970089 -38410432 - L1ME LINE L1 -351 5813 5678 609 309 73 4 chr15 62970101 62970334 -38410187 - MIR SINE MIR -11 251 3 307 302 174 29 chr15 62970335 62970507 -38410014 - L1ME LINE L1 -458 5663 5467 1544 199 13 22 chr15 62970534 62970845 -38409676 - AluJo SINE Alu -4 308 1 1803 174 0 13 chr15 62970904 62971202 -38409319 - AluJo SINE Alu -3 309 16 183 100 0 0 chr15 62971221 62971251 -38409270 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2432 87 3 0 chr15 62971483 62971792 -38408729 - AluSg SINE Alu 0 310 1 751 184 25 13 chr15 62971992 62972150 -38408371 + MIR SINE MIR 2 161 -101 316 365 12 24 chr15 62972256 62972423 -38408098 - MIR3 SINE MIR -9 199 35 1855 103 18 118 chr15 62972433 62972762 -38407759 - AluSx SINE Alu -16 296 1 2316 95 23 0 chr15 62972950 62973255 -38407266 + AluSx SINE Alu 1 312 0 2193 99 0 23 chr15 62973474 62973778 -38406743 - AluSq SINE Alu -16 297 1 22 0 0 0 chr15 62974010 62974032 -38406489 + AT_rich Low_complexity Low_complexity 1 22 0 478 284 10 56 chr15 62974993 62975190 -38405331 - L2 LINE L2 -149 3164 2977 * 2103 261 119 13 chr15 62975189 62975895 -38404626 + L2 LINE L2 2196 2976 -338 1145 253 107 36 chr15 62975898 62976554 -38403967 - L2 LINE L2 0 3313 2606 463 208 160 0 chr15 62976729 62976854 -38403667 - L2 LINE L2 -4 3309 3165 1224 127 0 6 chr15 62976877 62976891 -38403630 + AluSg/x SINE Alu 120 133 -179 2021 76 83 45 chr15 62976891 62977179 -38403342 + AluSx SINE Alu 1 299 -13 1224 127 0 6 chr15 62977179 62977337 -38403184 + AluSg/x SINE Alu 133 291 -21 343 308 112 7 chr15 62977364 62977507 -38403014 - L2 LINE L2 -1443 1871 1714 22 56 0 0 chr15 62977805 62977841 -38402680 + AT_rich Low_complexity Low_complexity 1 36 0 256 247 94 71 chr15 62977962 62978047 -38402474 - MIR SINE MIR -88 120 34 21 57 0 0 chr15 62978203 62978238 -38402283 + AT_rich Low_complexity Low_complexity 1 35 0 755 154 34 0 chr15 62978413 62978530 -38401991 + FLAM_A SINE Alu 1 121 -12 183 129 0 0 chr15 62978577 62978608 -38401913 + (TA)n Simple_repeat Simple_repeat 1 31 0 1606 189 0 24 chr15 62978654 62978951 -38401570 - AluJo SINE Alu -22 290 1 1715 166 0 60 chr15 62978982 62979296 -38401225 - AluJo SINE Alu -11 301 7 216 97 0 0 chr15 62979318 62979349 -38401172 + (T)n Simple_repeat Simple_repeat 1 31 0 1938 101 4 4 chr15 62979474 62979731 -38400790 - AluSx SINE Alu -55 257 1 304 308 77 0 chr15 62979843 62979973 -38400548 - MIR3 SINE MIR -4 204 65 523 230 18 9 chr15 62981227 62981340 -38399181 - MIR3 SINE MIR -6 202 89 289 341 59 0 chr15 62981533 62981618 -38398903 + L2 LINE L2 3168 3257 -15 34 55 0 0 chr15 62982190 62982245 -38398276 + AT_rich Low_complexity Low_complexity 1 55 0 1763 186 14 0 chr15 62982271 62982561 -38397960 + AluJb SINE Alu 1 294 -18 2634 164 54 27 chr15 62982657 62983064 -38397457 - Charlie1 DNA MER1_type -145 2616 2185 2057 119 13 35 chr15 62983064 62983376 -38397145 + AluSx SINE Alu 1 305 -7 2634 164 54 27 chr15 62983376 62983597 -38396924 - Charlie1 DNA MER1_type -576 2185 1971 2188 96 3 20 chr15 62983702 62983860 -38396661 - AluSx SINE Alu -24 288 136 2342 87 3 7 chr15 62983860 62984169 -38396352 - AluSp SINE Alu -5 308 1 2188 96 3 20 chr15 62984169 62984303 -38396218 - AluSx SINE Alu -176 136 1 472 244 0 31 chr15 62985079 62985206 -38395315 - LTR67 LTR ERVL -8 549 427 234 0 0 0 chr15 62985349 62985375 -38395146 + (T)n Simple_repeat Simple_repeat 1 26 0 522 221 36 7 chr15 62985375 62985515 -38395006 - MLT1A1 LTR MaLR -48 317 174 2528 81 0 0 chr15 62985641 62985951 -38394570 - AluSg SINE Alu 0 310 1 293 244 0 37 chr15 62986009 62986091 -38394430 - LTR67 LTR ERVL -476 81 3 1113 231 85 70 chr15 62989105 62989143 -38391378 + L1ME3A LINE L1 5565 5601 -569 324 0 0 0 chr15 62989143 62989179 -38391342 + (TG)n Simple_repeat Simple_repeat 2 37 0 1113 231 85 70 chr15 62989179 62989355 -38391166 + L1ME3A LINE L1 5601 5773 -397 2298 90 0 34 chr15 62989355 62989676 -38390845 - AluSq SINE Alu -2 311 2 1113 231 85 70 chr15 62989676 62990015 -38390506 + L1ME3A LINE L1 5773 6127 -43 1242 137 78 90 chr15 62990061 62990317 -38390204 + AluJb SINE Alu 1 253 -59 791 182 20 20 chr15 62990780 62990928 -38389593 + FRAM SINE Alu 10 157 -19 708 208 94 6 chr15 62990931 62991090 -38389431 - L2 LINE L2 -2 3311 3139 299 308 47 0 chr15 62991089 62991196 -38389325 + MIR3 SINE MIR 95 206 -2 * 212 327 91 18 chr15 62991232 62991342 -38389179 - L2 LINE L2 -2 3311 3194 484 248 81 19 chr15 62991713 62991874 -38388647 + MER8 DNA MER2_type 7 177 -62 382 141 0 77 chr15 62991906 62991984 -38388537 - Tigger2 DNA MER2_type -2646 72 1 2262 103 0 10 chr15 62992109 62992410 -38388111 - AluSg SINE Alu -12 298 1 537 206 35 28 chr15 62992504 62992645 -38387876 + L1MD2 LINE L1 5979 6120 -239 1482 151 75 19 chr15 62992646 62992965 -38387556 + L1MD2 LINE L1 6021 6357 -2 2176 123 7 0 chr15 62993387 62993687 -38386834 - AluJo SINE Alu -10 302 1 39 22 0 0 chr15 62993692 62993738 -38386783 + AT_rich Low_complexity Low_complexity 1 46 0 2123 125 0 0 chr15 62993741 62994030 -38386491 - AluSx SINE Alu -23 289 1 737 214 0 0 chr15 62994032 62994163 -38386358 - AluJo/FLAM SINE Alu -171 131 1 1771 149 47 20 chr15 62994675 62994971 -38385550 - AluJb SINE Alu -6 306 3 982 157 28 60 chr15 62995481 62995698 -38384823 + MER2 DNA MER2_type 1 210 -135 189 0 0 0 chr15 62995728 62995749 -38384772 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 1039 191 0 26 chr15 62995750 62995944 -38384577 - AluJb SINE Alu -30 282 94 259 83 0 0 chr15 62996060 62996096 -38384425 - AluYa5 SINE Alu -109 192 157 1512 194 67 11 chr15 62996540 62996823 -38383698 + AluJb SINE Alu 1 299 -13 380 59 0 0 chr15 62996957 62997008 -38383513 + AluSc SINE Alu 243 293 -6 1951 164 15 3 chr15 62997905 62998240 -38382281 - MER44D DNA MER2_type 0 609 1 1463 187 18 25 chr15 62998415 62998699 -38381822 - AluJo SINE Alu -30 282 1 275 346 107 31 chr15 62999174 62999333 -38381188 + L2 LINE L2 3101 3271 -1 315 290 71 60 chr15 62999590 62999734 -38380787 + MIR SINE MIR 12 160 -102 2440 83 0 3 chr15 62999734 63000046 -38380475 + AluY SINE Alu 1 311 0 315 290 71 60 chr15 63000046 63000084 -38380437 + MIR SINE MIR 160 196 -66 449 195 49 0 chr15 63000515 63000597 -38379924 - AluJ/FLAM SINE Alu -226 86 1 1866 137 0 7 chr15 63001042 63001319 -38379202 + AluSx SINE Alu 29 303 -9 1570 175 16 43 chr15 63001374 63001511 -38379010 + AluJo SINE Alu 3 142 -170 2531 75 0 3 chr15 63001511 63001817 -38378704 + AluY SINE Alu 1 305 -6 1570 175 16 43 chr15 63001817 63001982 -38378539 + AluJo SINE Alu 142 297 -15 25 51 0 0 chr15 63002272 63002311 -38378210 + AT_rich Low_complexity Low_complexity 1 39 0 2227 111 20 0 chr15 63002337 63002643 -38377878 - AluSx SINE Alu 0 312 1 2406 91 0 16 chr15 63002811 63003129 -38377392 - AluSp SINE Alu 0 313 1 24 0 0 0 chr15 63004033 63004057 -38376464 + AT_rich Low_complexity Low_complexity 1 24 0 2193 138 84 48 chr15 63004749 63005249 -38375272 + L1MB8 LINE L1 5656 6173 -5 22 70 0 0 chr15 63005617 63005660 -38374861 + AT_rich Low_complexity Low_complexity 1 43 0 209 171 0 0 chr15 63005717 63005752 -38374769 + (CA)n Simple_repeat Simple_repeat 2 36 0 761 269 28 14 chr15 63006340 63006556 -38373965 + MER58A DNA MER1_type 4 222 -2 8520 50 0 0 chr15 63007993 63008962 -38371559 + LTR5 LTR ERVK 1 969 0 457 184 0 196 chr15 63009059 63009153 -38371368 + Charlie1a DNA MER1_type 11 122 -2639 1898 128 46 4 chr15 63009153 63009434 -38371087 + AluJb SINE Alu 1 293 -19 2184 133 0 0 chr15 63009436 63009744 -38370777 + AluSx SINE Alu 1 308 -4 457 184 0 196 chr15 63009744 63009814 -38370707 + Charlie1a DNA MER1_type 123 145 -1310 1125 163 0 5 chr15 63009916 63010100 -38370421 - AluJo SINE Alu -125 187 5 204 200 0 0 chr15 63010282 63010327 -38370194 + (TA)n Simple_repeat Simple_repeat 1 45 0 2102 105 21 3 chr15 63010939 63011225 -38369296 - AluSx SINE Alu -21 291 1 860 126 7 28 chr15 63011491 63011634 -38368887 + AluJo SINE Alu 85 224 -88 183 80 0 0 chr15 63011634 63011659 -38368862 + (A)n Simple_repeat Simple_repeat 1 25 0 1825 168 0 38 chr15 63011727 63012042 -38368479 + AluJo SINE Alu 1 303 -9 21 0 0 0 chr15 63013086 63013107 -38367414 + AT_rich Low_complexity Low_complexity 1 21 0 395 295 94 0 chr15 63013157 63013306 -38367215 + L2 LINE L2 2245 2407 -907 1011 110 55 0 chr15 63013380 63013526 -38366995 + AluSg/x SINE Alu 71 224 -88 1756 109 40 33 chr15 63014025 63014299 -38366222 - AluSx SINE Alu -36 276 1 21 36 0 0 chr15 63014763 63014791 -38365730 + AT_rich Low_complexity Low_complexity 1 28 0 2122 143 0 13 chr15 63015128 63015443 -38365078 - AluSq SINE Alu -2 311 1 645 104 0 61 chr15 63015618 63015733 -38364788 - FLAM_A SINE Alu 0 142 35 289 291 88 61 chr15 63016137 63016285 -38364236 - MIR3 SINE MIR -25 183 32 299 309 0 0 chr15 63016376 63016444 -38364077 - MIR SINE MIR -63 145 78 2241 109 3 10 chr15 63016816 63017128 -38363393 + AluSg SINE Alu 1 310 0 958 70 64 4 chr15 63018233 63018737 -38361784 + (TA)n Simple_repeat Simple_repeat 1 534 0 1382 255 40 32 chr15 63018881 63019408 -38361113 - L2 LINE L2 -193 3120 2598 338 127 18 0 chr15 63019452 63019507 -38361014 - HsTC2 DNA Tc2 -1808 90 35 1175 261 66 11 chr15 63019554 63019934 -38360587 - MER20B DNA MER1_type -327 456 56 1826 114 103 0 chr15 63019937 63020208 -38360313 + AluSq SINE Alu 1 299 -14 2169 85 4 0 chr15 63020319 63020590 -38359931 - AluSq SINE Alu -41 272 1 266 254 0 42 chr15 63020662 63020733 -38359788 + L2 LINE L2 3242 3309 -4 694 219 86 21 chr15 63020822 63021009 -38359512 + MER63A DNA MER1_type 12 210 0 22 80 0 0 chr15 63021051 63021101 -38359420 + AT_rich Low_complexity Low_complexity 1 50 0 407 267 16 31 chr15 63021226 63021417 -38359104 - L1MC5 LINE L1 -48 7913 7726 989 195 66 83 chr15 63021799 63022028 -38358493 - L1M LINE L1 -786 5360 5155 2064 129 4 0 chr15 63022028 63022307 -38358214 - AluSx SINE Alu -16 296 17 989 195 66 83 chr15 63022307 63022484 -38358037 - L1M LINE L1 -991 5155 4976 238 236 0 0 chr15 63022470 63022565 -38357956 - L1MCa LINE L1 -3944 2598 2504 * 2336 92 3 0 chr15 63022569 63022872 -38357649 - AluY SINE Alu -7 304 1 2060 153 0 13 chr15 63023056 63023369 -38357152 + AluJo SINE Alu 1 309 -3 297 269 0 15 chr15 63023396 63023463 -38357058 + MER5A DNA MER1_type 37 102 -87 532 163 10 20 chr15 63023470 63023568 -38356953 - FRAM SINE Alu -20 156 60 2144 128 0 0 chr15 63023698 63024010 -38356511 - AluSx SINE Alu 0 312 1 352 263 94 56 chr15 63024097 63024257 -38356264 - L1MCa LINE L1 -4821 1719 1554 908 176 12 36 chr15 63024257 63024422 -38356099 + AluJo SINE Alu 1 161 -151 2279 114 3 0 chr15 63024750 63025057 -38355464 - AluSx SINE Alu -4 308 1 1579 171 56 28 chr15 63025191 63025478 -38355043 + AluJo SINE Alu 5 299 -13 1845 175 0 7 chr15 63025523 63025832 -38354689 + AluJb SINE Alu 1 307 -5 21 57 0 0 chr15 63025862 63025897 -38354624 + AT_rich Low_complexity Low_complexity 1 35 0 419 161 33 56 chr15 63025902 63026323 -38354198 + (CATAT)n Simple_repeat Simple_repeat 1 411 0 563 105 23 0 chr15 63026565 63026651 -38353870 - AluSg/x SINE Alu -13 296 209 1867 148 17 0 chr15 63026767 63027058 -38353463 + AluSx SINE Alu 1 296 -16 680 109 36 0 chr15 63027060 63027170 -38353351 + L1MB4 LINE L1 6066 6179 -1 2231 116 3 0 chr15 63027779 63028089 -38352432 + AluSx SINE Alu 1 311 -1 511 146 2 14 chr15 63028139 63028245 -38352276 + L1ME1 LINE L1 5607 5708 -458 689 148 0 0 chr15 63028255 63028356 -38352165 - AluSg/x SINE Alu -21 288 188 1450 212 20 47 chr15 63028358 63028694 -38351827 + L1ME1 LINE L1 5698 6021 -145 1608 164 3 17 chr15 63028694 63028986 -38351535 - AluJb SINE Alu -24 288 1 1450 212 20 47 chr15 63028986 63029092 -38351429 + L1ME1 LINE L1 6021 6128 -38 2318 99 0 0 chr15 63029274 63029577 -38350944 - AluY SINE Alu -4 307 5 1168 169 0 31 chr15 63029677 63029737 -38350784 + AluJb SINE Alu 43 103 -209 2450 109 16 16 chr15 63029737 63030112 -38350409 - THE1C LTR MaLR 0 375 1 1168 169 0 31 chr15 63030112 63030246 -38350275 + AluJb SINE Alu 103 231 -81 2058 122 3 20 chr15 63030314 63030617 -38349904 - AluSx SINE Alu -13 299 2 487 271 72 58 chr15 63030619 63030996 -38349525 - LTR33 LTR ERVL -53 468 87 764 253 47 31 chr15 63031041 63031349 -38349172 + L1ME4a LINE L1 5597 5912 -209 652 178 0 17 chr15 63031712 63031830 -38348691 + AluJb SINE Alu 87 202 -110 1061 146 0 0 chr15 63031930 63032081 -38348440 - AluSg SINE Alu -159 151 1 359 281 152 0 chr15 63032440 63032604 -38347917 - MIR SINE MIR -28 234 46 1911 154 0 30 chr15 63032920 63033218 -38347303 - AluJb SINE Alu -22 290 2 536 71 12 12 chr15 63033221 63033305 -38347216 - L1MB3 LINE L1 -19 6164 6081 319 116 0 207 chr15 63034014 63034068 -38346453 - MER33 DNA MER1_type -2261 324 307 234 105 0 0 chr15 63034068 63034106 -38346415 + (TTG)n Simple_repeat Simple_repeat 2 39 0 319 116 0 207 chr15 63034106 63034172 -38346349 - MER33 DNA MER1_type -2278 307 229 1610 160 4 32 chr15 63034305 63034586 -38345935 - AluJb SINE Alu -7 305 33 448 306 94 30 chr15 63034643 63034878 -38345643 - HAL1 LINE L1 -935 1572 1323 407 305 41 31 chr15 63034889 63035132 -38345389 - L1MEd LINE L1 -4929 1190 951 294 29 0 0 chr15 63035132 63035167 -38345354 + (ATG)n Simple_repeat Simple_repeat 2 36 0 2067 129 0 0 chr15 63035167 63035453 -38345068 - AluSx SINE Alu -26 286 1 407 305 41 31 chr15 63035453 63035500 -38345021 - L1MEd LINE L1 -5167 952 896 318 346 48 48 chr15 63035560 63035849 -38344672 - L1MEd LINE L1 -5279 840 552 743 121 0 43 chr15 63035887 63036003 -38344518 - AluSg/x SINE Alu -67 243 133 2290 97 7 0 chr15 63036020 63036320 -38344201 - AluSp SINE Alu -11 302 1 218 189 0 0 chr15 63036383 63036420 -38344101 + (TG)n Simple_repeat Simple_repeat 1 37 0 545 191 111 25 chr15 63037086 63037248 -38343273 + MER33 DNA MER1_type 2 177 -147 25 0 0 0 chr15 63037248 63037273 -38343248 + AT_rich Low_complexity Low_complexity 1 25 0 1341 96 17 0 chr15 63037273 63037450 -38343071 - AluSg/x SINE Alu -4 308 129 1504 78 21 0 chr15 63037552 63037744 -38342777 + AluSp SINE Alu 105 300 -13 249 326 27 22 chr15 63037758 63037927 -38342594 + MLT1K LTR MaLR 426 601 -14 445 265 110 35 chr15 63038141 63038368 -38342153 - L1MC/D LINE L1 -323 5798 5590 1532 127 110 0 chr15 63038368 63038596 -38341925 - AluSx SINE Alu -59 253 1 445 265 110 35 chr15 63038596 63038908 -38341613 - L1MC/D LINE L1 -531 5590 5197 2347 106 3 0 chr15 63038911 63039223 -38341298 - AluSp SINE Alu 0 313 1 308 258 158 71 chr15 63039284 63039344 -38341177 - L1MC/D LINE L1 -1199 4947 4894 2164 132 0 0 chr15 63039344 63039648 -38340873 - AluSx SINE Alu -8 304 1 308 258 158 71 chr15 63039648 63040119 -38340402 - L1MC/D LINE L1 -1252 4894 4370 273 29 0 0 chr15 63040141 63040175 -38340346 + (TG)n Simple_repeat Simple_repeat 2 35 0 1609 164 38 116 chr15 63040187 63040583 -38339938 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr15 63040757 63040778 -38339743 + AT_rich Low_complexity Low_complexity 1 21 0 2009 151 0 3 chr15 63040820 63041131 -38339390 - AluJb SINE Alu -2 310 1 228 128 0 0 chr15 63041145 63041184 -38339337 - L1MB7 LINE L1 -7 6177 6139 411 183 0 0 chr15 63041184 63041244 -38339277 - FLAM_A SINE Alu -72 60 1 243 203 108 40 chr15 63041274 63041348 -38339173 - LTR16B LTR ERVL -373 91 13 490 310 124 38 chr15 63041559 63042066 -38338455 - L2 LINE L2 -1304 2010 1460 885 119 0 8 chr15 63042115 63042257 -38338264 + FLAM_C SINE Alu 2 142 0 590 213 31 0 chr15 63042367 63042494 -38338027 + L1MA10 LINE L1 6197 6327 -7 191 157 20 0 chr15 63042513 63042564 -38337957 + T-rich Low_complexity Low_complexity 2 53 0 1098 146 4 5 chr15 63042659 63042932 -38337589 + AluSp SINE Alu 2 318 0 2128 135 0 0 chr15 63043229 63043526 -38336995 - AluSx SINE Alu -15 297 1 2708 131 15 0 chr15 63043572 63043969 -38336552 + MER57A LTR ERV1 1 403 0 318 279 37 31 chr15 63044221 63044378 -38336143 - MIR SINE MIR -69 139 22 1023 184 0 6 chr15 63044507 63044681 -38335840 + AluJo SINE Alu 123 295 -17 1953 155 0 25 chr15 63047149 63047465 -38333056 - AluJb SINE Alu -4 308 1 2872 13 0 0 chr15 63047571 63047881 -38332640 - AluYb8 SINE Alu -8 310 1 498 115 0 186 chr15 63047909 63048022 -38332499 - U6 snRNA snRNA -13 94 3 2375 107 0 0 chr15 63048367 63048676 -38331845 + AluSx SINE Alu 1 309 -3 1709 194 0 0 chr15 63048765 63049054 -38331467 + AluJb SINE Alu 1 289 -23 2117 106 3 3 chr15 63049072 63049399 -38331122 + AluSx SINE Alu 1 327 0 261 269 45 52 chr15 63049457 63049591 -38330930 + MIR SINE MIR 94 226 -36 1215 178 3 127 chr15 63049759 63050114 -38330407 - AluJo SINE Alu 0 312 2 580 158 11 0 chr15 63050123 63050218 -38330303 - FLAM_A SINE Alu -8 134 39 188 148 0 0 chr15 63050320 63050347 -38330174 + MIR SINE MIR 157 183 -79 2229 100 0 10 chr15 63050477 63050778 -38329743 - AluSx SINE Alu -14 298 1 400 281 121 8 chr15 63051025 63051306 -38329215 + L1ME LINE L1 5468 5782 -339 1723 178 0 4 chr15 63052144 63052425 -38328096 + AluJb SINE Alu 1 280 -32 228 289 169 0 chr15 63052580 63052663 -38327858 + L2 LINE L2 3140 3236 -36 2114 144 0 0 chr15 63052779 63053084 -38327437 + AluSx SINE Alu 1 305 -7 22 56 0 0 chr15 63053846 63053882 -38326639 + AT_rich Low_complexity Low_complexity 1 36 0 1866 130 0 41 chr15 63053911 63054203 -38326318 + AluJb SINE Alu 5 284 -28 2571 126 75 14 chr15 63054229 63054666 -38325855 - L1MB7 LINE L1 -23 6161 5698 2630 68 0 0 chr15 63054681 63054991 -38325530 + AluY SINE Alu 1 310 -1 189 0 0 0 chr15 63056259 63056280 -38324241 + (T)n Simple_repeat Simple_repeat 1 21 0 724 183 89 42 chr15 63056933 63057060 -38323461 + MER3 DNA MER1_type 2 142 -67 2165 145 0 0 chr15 63057060 63057364 -38323157 - AluSx SINE Alu -8 304 1 724 183 89 42 chr15 63057364 63057427 -38323094 + MER3 DNA MER1_type 142 201 -8 2360 79 0 10 chr15 63057642 63057947 -38322574 + AluSx SINE Alu 1 302 -10 1395 76 0 0 chr15 63057948 63058119 -38322402 + AluSp SINE Alu 134 304 -9 203 405 0 0 chr15 63058750 63058918 -38321603 + (CCA)n Simple_repeat Simple_repeat 1 168 0 2438 67 7 3 chr15 63059166 63059466 -38321055 - AluSp SINE Alu -12 301 1 389 302 106 75 chr15 63059874 63059917 -38320604 - L1MEd LINE L1 -5250 869 829 2178 106 13 0 chr15 63059917 63060220 -38320301 + AluSp SINE Alu 1 307 -6 389 302 106 75 chr15 63060220 63060507 -38320014 - L1MEd LINE L1 -5290 829 529 293 214 98 58 chr15 63060876 63061049 -38319472 - L1MEd LINE L1 -5933 186 7 190 344 21 32 chr15 63061963 63062056 -38318465 + MIR SINE MIR 42 133 -75 287 323 30 30 chr15 63062384 63062517 -38318004 + L2 LINE L2 3177 3309 -4 346 134 31 31 chr15 63062543 63062640 -38317881 + T-rich Low_complexity Low_complexity 3 99 0 2048 135 10 0 chr15 63062642 63062945 -38317576 - AluSx SINE Alu -2 310 5 2134 108 6 19 chr15 63062967 63063283 -38317238 - AluSx SINE Alu 0 312 1 1241 204 36 46 chr15 63063678 63063960 -38316561 + L1ME3 LINE L1 5841 6124 -38 2348 91 0 10 chr15 63063960 63064267 -38316254 + AluSq SINE Alu 1 304 -9 2381 90 0 0 chr15 63064267 63064568 -38315953 + AluSx SINE Alu 1 301 -11 1241 204 36 46 chr15 63064568 63064611 -38315910 + L1ME3 LINE L1 6122 6162 0 180 304 89 36 chr15 63064933 63065045 -38315476 + MIR SINE MIR 74 191 -71 * 212 338 70 14 chr15 63065013 63065084 -38315437 + L3b LINE CR1 1505 1579 -4 1261 90 0 0 chr15 63065084 63065239 -38315282 + AluSg1 SINE Alu 1 155 -154 984 184 0 32 chr15 63065339 63065529 -38314992 + AluJb SINE Alu 120 303 -9 306 309 183 11 chr15 63065535 63065710 -38314811 - MIR SINE MIR -12 250 46 3426 91 32 0 chr15 63065879 63066318 -38314203 - MLT2A2 LTR ERVL 0 453 1 1046 93 22 0 chr15 63066361 63066500 -38314021 - AluSc SINE Alu -13 296 155 2205 152 41 68 chr15 63066557 63066871 -38313650 - MLT1D LTR MaLR 0 505 209 2125 107 7 3 chr15 63066871 63067171 -38313350 - AluSx SINE Alu -11 301 1 2205 152 41 68 chr15 63067171 63067369 -38313152 - MLT1D LTR MaLR -296 209 7 712 13 0 0 chr15 63068032 63068107 -38312414 - tRNA-Gln-CAG tRNA tRNA 0 75 1 21 0 0 0 chr15 63068368 63068389 -38312132 + GC_rich Low_complexity Low_complexity 1 21 0 184 241 190 0 chr15 63070275 63070333 -38310188 - MIR3 SINE MIR -27 181 113 464 284 93 19 chr15 63070652 63070814 -38309707 + MIR SINE MIR 18 191 -71 2006 108 3 69 chr15 63070894 63071228 -38309293 - AluJb SINE Alu 0 312 1 2371 84 3 0 chr15 63071409 63071708 -38308813 - AluSp SINE Alu -13 300 1 180 97 0 0 chr15 63072510 63072541 -38307980 + (TA)n Simple_repeat Simple_repeat 2 32 0 1745 136 0 112 chr15 63072541 63072864 -38307657 - AluJo SINE Alu -15 287 1 2195 86 6 51 chr15 63073202 63073515 -38307006 - AluSp SINE Alu -14 299 1 1644 146 8 8 chr15 63073719 63074004 -38306517 + AluJb SINE Alu 22 306 0 827 209 0 17 chr15 63074013 63074185 -38306336 - AluSc SINE Alu -20 289 121 22 35 0 0 chr15 63074209 63074238 -38306283 + AT_rich Low_complexity Low_complexity 1 29 0 2054 136 3 3 chr15 63075228 63075530 -38304991 - AluSx SINE Alu -9 303 2 2392 69 16 0 chr15 63077169 63077474 -38303047 + AluY SINE Alu 1 310 -1 1715 143 3 65 chr15 63077758 63078079 -38302442 - AluJb SINE Alu -11 301 1 763 168 0 8 chr15 63078131 63078250 -38302271 + FLAM_C SINE Alu 1 118 -15 182 88 0 29 chr15 63078255 63078289 -38302232 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 525 261 30 30 chr15 63079442 63079576 -38300945 + MIR SINE MIR 8 141 -121 211 336 52 45 chr15 63080077 63080211 -38300310 + MIR3 SINE MIR 23 157 -51 228 274 105 21 chr15 63080266 63080361 -38300160 - L3b LINE CR1 -180 1403 1301 488 164 0 0 chr15 63080471 63080544 -38299977 + AluJb SINE Alu 1 73 -239 947 131 63 105 chr15 63080599 63080790 -38299731 + AluJb SINE Alu 72 254 -58 631 188 41 35 chr15 63083639 63083809 -38296712 - MER112 DNA MER1_type -43 217 47 1804 159 24 10 chr15 63083867 63084156 -38296365 + AluJo SINE Alu 1 293 -19 748 114 0 0 chr15 63084597 63084702 -38295819 - AluSg/x SINE Alu -4 306 202 3023 139 12 16 chr15 63085052 63085568 -38294953 - L1MA6 LINE L1 -523 5768 5255 2070 142 42 77 chr15 63085577 63086029 -38294492 + L1MA6 LINE L1 5781 6216 -84 270 232 0 0 chr15 63086129 63086185 -38294336 + FLAM SINE Alu 77 132 -1 319 314 101 47 chr15 63087351 63087520 -38293001 - L2 LINE L2 -7 3265 3088 246 62 0 0 chr15 63087572 63087604 -38292917 + (TG)n Simple_repeat Simple_repeat 1 32 0 450 290 58 13 chr15 63087722 63087877 -38292644 - MIR SINE MIR -70 192 31 314 274 73 96 chr15 63087904 63088220 -38292301 - L2 LINE L2 -229 3043 2737 219 69 0 0 chr15 63088790 63088819 -38291702 + (TG)n Simple_repeat Simple_repeat 2 30 0 731 114 9 0 chr15 63089317 63089422 -38291099 + U6 snRNA snRNA 1 106 -1 2197 122 0 0 chr15 63090005 63090292 -38290229 - AluSx SINE Alu -25 287 1 183 234 0 0 chr15 63090383 63090507 -38290014 + (TA)n Simple_repeat Simple_repeat 1 124 0 27 0 0 0 chr15 63090625 63090652 -38289869 + AT_rich Low_complexity Low_complexity 1 27 0 26 50 0 0 chr15 63091081 63091121 -38289400 + AT_rich Low_complexity Low_complexity 1 40 0 369 367 78 12 chr15 63091226 63091482 -38289039 + LTR16B LTR ERVL 43 315 -149 2325 111 0 3 chr15 63092627 63092924 -38287597 - AluSq SINE Alu -17 296 1 959 178 0 0 chr15 63092928 63093074 -38287447 - FRAM SINE Alu -30 146 1 420 329 34 34 chr15 63093357 63093594 -38286927 + MIR SINE MIR 20 256 -6 1358 158 12 119 chr15 63094331 63094505 -38286016 - AluSx SINE Alu -2 300 178 450 0 0 0 chr15 63094505 63094555 -38285966 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 1358 158 12 119 chr15 63094555 63094716 -38285805 - AluSx SINE Alu -124 178 1 401 299 17 30 chr15 63094717 63094898 -38285623 - MIR SINE MIR -65 197 18 852 219 185 12 chr15 63094911 63095230 -38285291 - MLT1A2 LTR MaLR 0 374 1 305 279 150 7 chr15 63095251 63095343 -38285178 + MIR3 SINE MIR 41 118 -90 2386 100 0 0 chr15 63095343 63095642 -38284879 + AluSx SINE Alu 1 299 -13 305 279 150 7 chr15 63095642 63095696 -38284825 + MIR3 SINE MIR 118 208 0 328 214 36 0 chr15 63096655 63096739 -38283782 - MIR SINE MIR -116 146 60 2468 144 35 48 chr15 63097262 63097720 -38282801 + LTR32 LTR ERVL 20 471 0 446 253 50 59 chr15 63098734 63098936 -38281585 - MIR SINE MIR -35 227 28 2023 249 102 43 chr15 63099048 63099858 -38280663 - L1PBa LINE L1 -6000 863 6 357 141 94 12 chr15 63099869 63099954 -38280567 - L1 LINE L1 -814 5332 5241 345 190 0 0 chr15 63099957 63100015 -38280506 + Tigger3(Golem) DNA MER2_type 3 60 -2969 912 137 0 0 chr15 63100027 63100158 -38280363 + Tigger3(Golem) DNA MER2_type 2906 3036 0 258 227 0 27 chr15 63100159 63100234 -38280287 - L1 LINE L1 -904 5242 5170 1398 198 4 12 chr15 63100234 63100491 -38280030 - AluJo SINE Alu -14 298 44 1051 207 57 0 chr15 63100492 63100772 -38279749 - L1 LINE L1 -957 5189 4894 1054 156 17 22 chr15 63101475 63101649 -38278872 - AluSc SINE Alu -12 297 124 450 0 0 0 chr15 63101649 63101699 -38278822 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 261 318 6 46 chr15 63102354 63102527 -38277994 + GA-rich Low_complexity Low_complexity 3 168 0 279 279 16 25 chr15 63102615 63102737 -38277784 + GA-rich Low_complexity Low_complexity 3 123 0 7609 149 157 0 chr15 63103495 63105052 -38275469 - L1PBa LINE L1 -4231 2632 831 238 282 13 13 chr15 63105167 63105245 -38275276 + MIR SINE MIR 178 255 -7 650 221 23 50 chr15 63105413 63105626 -38274895 + MIR SINE MIR 47 248 -14 740 289 54 8 chr15 63106271 63106510 -38274011 + MIR SINE MIR 13 262 0 2303 73 0 17 chr15 63107464 63107777 -38272744 - AluY SINE Alu 0 308 1 588 294 0 0 chr15 63107929 63108075 -38272446 + MER91A DNA MER1_type 1 146 -50 1521 226 44 31 chr15 63108075 63108464 -38272057 - LTR16C LTR ERVL 0 491 98 185 245 0 19 chr15 63108966 63109019 -38271502 + L3 LINE CR1 1273 1324 -253 325 232 147 0 chr15 63109083 63109178 -38271343 - MIR SINE MIR -79 183 75 7138 193 36 3 chr15 63109438 63111098 -38269423 + L1PBa LINE L1 2692 4403 -2459 2100 114 20 13 chr15 63111104 63111402 -38269119 + AluSx SINE Alu 1 300 -12 963 103 14 0 chr15 63111402 63111547 -38268974 + L1MB3 LINE L1 5828 5974 -209 2245 98 6 47 chr15 63112404 63112722 -38267799 + AluSg SINE Alu 1 305 -5 250 90 4 0 chr15 63112822 63112867 -38267654 + L1MB7 LINE L1 6132 6177 -1 906 200 19 33 chr15 63113134 63113344 -38267177 + MIR SINE MIR 1 207 -55 1992 114 3 37 chr15 63113349 63113646 -38266875 + AluSx SINE Alu 1 287 -25 318 272 37 32 chr15 63113672 63113826 -38266695 + L1MC4 LINE L1 1914 6989 -1333 180 250 0 0 chr15 63115023 63115063 -38265458 - L2 LINE L2 -95 3218 3179 451 271 77 7 chr15 63115903 63116058 -38264463 + Charlie8 DNA MER1_type 103 268 -2149 783 250 0 5 chr15 63116257 63116449 -38264072 - LTR33 LTR ERVL -8 513 323 376 281 36 14 chr15 63116555 63116694 -38263827 - LTR33 LTR ERVL -378 143 2 227 345 127 13 chr15 63117443 63117742 -38262779 + L2 LINE L2 2910 3242 -30 233 284 0 0 chr15 63118952 63119019 -38261502 - MIR SINE MIR -63 145 79 278 242 15 0 chr15 63119113 63119179 -38261342 + L3 LINE CR1 1319 1385 -192 200 349 72 0 chr15 63119862 63119945 -38260576 + MIR SINE MIR 50 138 -124 223 260 154 39 chr15 63119978 63120082 -38260439 + MIR SINE MIR 138 253 -9 264 242 219 31 chr15 63121228 63121356 -38259165 + MER5B DNA MER1_type 24 175 -3 216 209 0 0 chr15 63121966 63122009 -38258512 - MIR SINE MIR -147 115 73 251 267 44 0 chr15 63122299 63122389 -38258132 + (TCCA)n Simple_repeat Simple_repeat 1 94 0 240 143 0 0 chr15 63122684 63122726 -38257795 + (TCCCC)n Simple_repeat Simple_repeat 1 42 0 278 276 118 39 chr15 63123697 63123824 -38256697 - MIR SINE MIR -122 140 4 203 290 159 0 chr15 63123982 63124051 -38256470 - MIR SINE MIR -83 125 46 189 176 0 0 chr15 63125006 63125040 -38255481 - MIR3 SINE MIR -41 167 134 695 241 12 6 chr15 63125063 63125233 -38255288 + L1ME LINE L1 15 185 -5885 1052 261 123 37 chr15 63125255 63125652 -38254869 + L1ME LINE L1 244 692 -5378 2193 102 6 35 chr15 63125652 63125965 -38254556 + AluSg SINE Alu 1 304 -6 1052 261 123 37 chr15 63125965 63126054 -38254467 + L1ME LINE L1 692 772 -5298 372 233 128 15 chr15 63126549 63126682 -38253839 - MIR3 SINE MIR -12 196 49 215 146 0 24 chr15 63126990 63127031 -38253490 + (TCTCC)n Simple_repeat Simple_repeat 2 41 0 310 275 94 22 chr15 63127149 63127287 -38253234 + MIR SINE MIR 51 198 -64 351 264 11 0 chr15 63127324 63127411 -38253110 - MIR SINE MIR -13 249 162 207 337 0 0 chr15 63127806 63127889 -38252632 + (TG)n Simple_repeat Simple_repeat 2 84 0 3200 136 32 11 chr15 63127890 63128130 -38252391 - MER44D DNA MER2_type -1882 605 371 2311 113 7 0 chr15 63128130 63128432 -38252089 + AluSx SINE Alu 1 304 -8 3200 136 32 11 chr15 63128432 63128721 -38251800 - MER44D DNA MER2_type -2116 371 10 202 200 0 0 chr15 63128725 63128765 -38251756 + (TG)n Simple_repeat Simple_repeat 1 40 0 348 348 6 11 chr15 63128789 63128970 -38251551 + (TG)n Simple_repeat Simple_repeat 1 180 0 247 256 70 54 chr15 63129245 63129374 -38251147 - L3b LINE CR1 -180 1403 1273 189 290 16 0 chr15 63129767 63129829 -38250692 + L2 LINE L2 3250 3312 -1 322 192 178 55 chr15 63129852 63129998 -38250523 - L1ME4a LINE L1 -118 6003 5840 279 0 0 0 chr15 63130043 63130074 -38250447 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1190 178 0 0 chr15 63130168 63130359 -38250162 - AluJb SINE Alu -2 310 120 24 0 0 0 chr15 63130782 63130806 -38249715 + AT_rich Low_complexity Low_complexity 1 24 0 783 144 0 0 chr15 63131073 63131198 -38249323 + AluJo/FLAM SINE Alu 3 127 -175 2257 119 7 0 chr15 63131201 63131511 -38249010 + AluSx SINE Alu 1 312 0 711 192 0 0 chr15 63131916 63132041 -38248480 - FLAM_A SINE Alu -8 125 1 2467 90 3 0 chr15 63132263 63132573 -38247948 + AluY SINE Alu 1 311 0 519 296 38 76 chr15 63133346 63133504 -38247017 + L2 LINE L2 2647 2809 -505 2152 124 7 0 chr15 63133504 63133795 -38246726 - AluSx SINE Alu -19 293 1 519 296 38 76 chr15 63133795 63133977 -38246544 + L2 LINE L2 2809 2974 -340 186 254 0 108 chr15 63134249 63134379 -38246142 - L2 LINE L2 -2838 476 361 934 251 165 9 chr15 63134459 63134901 -38245620 + LTR33 LTR ERVL 1 511 -10 395 188 71 27 chr15 63134914 63135026 -38245495 - MIR SINE MIR -55 153 37 2255 117 3 3 chr15 63135441 63135749 -38244772 - AluSq SINE Alu -5 308 1 224 184 303 28 chr15 63136562 63136671 -38243850 + MIR3 SINE MIR 30 168 -40 2571 149 21 2 chr15 63136902 63137384 -38243137 - L1M2 LINE L1 -1560 4586 4096 * 4535 133 16 2 chr15 63137380 63138532 -38241989 + L1M2 LINE L1 4567 5734 -566 596 161 8 62 chr15 63138596 63138726 -38241795 - MER3 DNA MER1_type -22 187 65 260 331 26 13 chr15 63138973 63139124 -38241397 + (CA)n Simple_repeat Simple_repeat 2 154 0 408 255 95 80 chr15 63140619 63140819 -38239702 + L1MC4 LINE L1 7689 7891 -151 806 137 0 50 chr15 63140823 63140962 -38239559 + FLAM_C SINE Alu 1 132 -1 1919 178 0 9 chr15 63140982 63141297 -38239224 + AluJb SINE Alu 1 312 0 230 319 53 26 chr15 63141437 63141550 -38238971 + MIR SINE MIR 102 217 -45 3338 206 74 54 chr15 63141653 63142021 -38238500 + L1MDa LINE L1 18 377 -6163 1728 187 0 11 chr15 63142021 63142305 -38238216 + AluJo SINE Alu 1 281 -31 3338 206 74 54 chr15 63142305 63143404 -38237117 + L1MDa LINE L1 377 1749 -4791 2857 225 31 34 chr15 63143373 63143482 -38237039 + L1M4b LINE L1 1164 1272 -5268 * 2156 94 23 23 chr15 63143482 63143781 -38236740 + AluSg SINE Alu 1 299 -11 2857 225 31 34 chr15 63143781 63144644 -38235877 + L1M4b LINE L1 1272 2601 -3939 227 91 0 0 chr15 63144664 63144697 -38235824 + L1M4b LINE L1 2580 2612 -3928 2336 110 16 0 chr15 63144697 63145005 -38235516 + AluSq SINE Alu 1 313 0 3950 138 36 29 chr15 63145018 63145167 -38235354 + L1MD1 LINE L1 5461 5608 -634 2497 70 3 0 chr15 63145167 63145468 -38235053 + AluY SINE Alu 1 302 -9 3950 138 36 29 chr15 63145468 63145928 -38234593 + L1MD1 LINE L1 5608 6078 -164 1627 166 51 27 chr15 63145928 63146223 -38234298 - AluJo SINE Alu -10 302 1 3950 138 36 29 chr15 63146223 63146371 -38234150 + L1MD1 LINE L1 6078 6224 -18 571 193 101 0 chr15 63146387 63146506 -38234015 + MER96 DNA MER1_type? 45 175 0 2534 69 0 3 chr15 63147339 63147644 -38232877 + AluY SINE Alu 1 304 -7 606 234 184 36 chr15 63148167 63148504 -38232017 - LTR33 LTR ERVL -91 430 44 380 314 80 0 chr15 63149530 63149667 -38230854 - MIR3 SINE MIR -10 198 51 552 202 0 0 chr15 63149681 63149780 -38230741 - L2 LINE L2 -22 3291 3193 334 162 0 27 chr15 63149802 63149876 -38230645 - L1M4 LINE L1 -3794 2352 2281 820 157 0 8 chr15 63149883 63150017 -38230504 - FLAM_C SINE Alu 0 133 1 343 195 0 0 chr15 63150018 63150100 -38230421 + MER3 DNA MER1_type 126 207 -2 2375 87 17 0 chr15 63150331 63150631 -38229890 - AluSq SINE Alu -8 305 1 252 273 26 13 chr15 63151168 63151245 -38229276 + GA-rich Low_complexity Low_complexity 1 78 0 204 298 64 73 chr15 63152069 63152287 -38228234 + L3b LINE CR1 1297 1512 -71 207 0 0 0 chr15 63152380 63152403 -38228118 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 185 278 19 0 chr15 63152760 63152814 -38227707 + L2 LINE L2 3209 3263 -9 1179 207 78 41 chr15 63153139 63153458 -38227063 + LTR16A LTR ERVL 114 444 -6 412 213 0 0 chr15 63153508 63153588 -38226933 - MIR3 SINE MIR -30 178 99 377 315 48 14 chr15 63153967 63154113 -38226408 - MIR3 SINE MIR -22 186 36 328 347 16 8 chr15 63155052 63155176 -38225345 + MIR SINE MIR 21 145 -63 2653 165 23 87 chr15 63155225 63156205 -38224316 + L1MD2 LINE L1 4887 5795 -564 1245 137 106 111 chr15 63156211 63156598 -38223923 + MLT1B LTR MaLR 6 390 0 1338 200 136 60 chr15 63156598 63156827 -38223694 + L1MD2 LINE L1 5792 6002 -1783 2154 142 3 0 chr15 63156827 63157137 -38223384 - AluJb SINE Alu -1 311 1 1338 200 136 60 chr15 63157137 63157432 -38223089 + L1MD2 LINE L1 6002 7779 -6 200 274 43 77 chr15 63158813 63158930 -38221591 + L2 LINE L2 3123 3235 -37 4638 145 11 14 chr15 63158955 63159788 -38220733 + L1MB8 LINE L1 5309 6138 -40 1948 122 0 0 chr15 63159788 63160051 -38220470 + AluSx SINE Alu 48 310 -2 581 251 87 20 chr15 63160609 63160737 -38219784 + MIR SINE MIR 55 203 -59 2066 137 0 7 chr15 63160737 63161088 -38219433 - AluSx SINE Alu 0 349 1 581 251 87 20 chr15 63161088 63161153 -38219368 + MIR SINE MIR 203 262 0 2393 83 0 16 chr15 63161166 63161480 -38219041 - AluSc SINE Alu 0 309 1 635 171 0 31 chr15 63162886 63163015 -38217506 + FLAM_A SINE Alu 14 138 -4 190 309 29 0 chr15 63163026 63163094 -38217427 - L3b LINE CR1 -215 1368 1299 483 240 162 7 chr15 63163100 63163254 -38217267 - MER5B DNA MER1_type 0 178 1 740 171 8 0 chr15 63163282 63163405 -38217116 - FRAM SINE Alu -19 157 34 531 268 109 0 chr15 63163477 63163660 -38216861 - MIR SINE MIR -12 250 48 312 269 168 0 chr15 63163749 63163868 -38216653 + MIR SINE MIR 50 188 -74 24 53 0 0 chr15 63164115 63164153 -38216368 + AT_rich Low_complexity Low_complexity 1 38 0 180 111 0 0 chr15 63164866 63164893 -38215628 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 263 136 62 111 chr15 63164935 63165016 -38215505 - L1MC4 LINE L1 0 8042 7966 924 143 22 113 chr15 63165044 63165274 -38215247 + MER20 DNA MER1_type 1 209 -10 723 173 30 0 chr15 63165298 63165431 -38215090 - L1MC4 LINE L1 -150 7892 7756 374 353 87 14 chr15 63166145 63166363 -38214158 - MIR SINE MIR -6 256 23 * 449 258 16 16 chr15 63166346 63166470 -38214051 + MIR SINE MIR 30 153 -109 194 284 190 35 chr15 63168148 63168264 -38212257 - L2 LINE L2 -3 3269 3136 180 318 80 23 chr15 63168724 63168900 -38211621 - L2 LINE L2 -557 2757 2572 778 177 0 7 chr15 63169025 63169172 -38211349 - L1MA10 LINE L1 -10 6324 6179 535 180 17 99 chr15 63169187 63169359 -38211162 - L1ME1 LINE L1 -178 5988 5831 325 217 0 66 chr15 63169423 63169529 -38210992 + MER5A DNA MER1_type 11 109 -80 183 80 0 0 chr15 63169711 63169736 -38210785 + (T)n Simple_repeat Simple_repeat 1 25 0 2087 125 0 0 chr15 63169774 63170054 -38210467 - AluSx SINE Alu -32 280 1 180 265 20 0 chr15 63171243 63171292 -38209229 - L2 LINE L2 -8 3305 3256 21 36 0 0 chr15 63171515 63171543 -38208978 + AT_rich Low_complexity Low_complexity 1 28 0 541 87 0 107 chr15 63171922 63172025 -38208496 + AluJb SINE Alu 199 290 -22 214 213 43 0 chr15 63173585 63173632 -38206889 - MIR3 SINE MIR -52 156 108 2080 152 0 0 chr15 63173837 63174139 -38206382 + AluSx SINE Alu 1 302 -10 710 178 92 7 chr15 63174541 63174693 -38205828 + MER96 DNA MER1_type? 6 170 -5 1414 168 35 39 chr15 63174984 63175269 -38205252 + AluJb SINE Alu 1 284 -28 2172 145 0 0 chr15 63175282 63175592 -38204929 + AluJb SINE Alu 1 310 -2 638 278 26 16 chr15 63176447 63176641 -38203880 + MIR SINE MIR 67 262 0 210 289 0 26 chr15 63177741 63177817 -38202704 + CT-rich Low_complexity Low_complexity 3 76 0 245 235 59 35 chr15 63178305 63178390 -38202131 + MIR SINE MIR 62 148 -60 379 289 84 14 chr15 63178975 63179117 -38201404 - MIR SINE MIR -55 207 56 232 197 13 13 chr15 63179446 63179522 -38200999 + CT-rich Low_complexity Low_complexity 1 76 0 718 231 91 45 chr15 63179534 63179777 -38200744 - MIR SINE MIR -4 258 5 619 239 40 72 chr15 63179947 63180169 -38200352 + MIR SINE MIR 48 262 0 1795 131 35 64 chr15 63180322 63180636 -38199885 + AluJo SINE Alu 1 305 -7 406 253 108 130 chr15 63181385 63181709 -38198812 - L2 LINE L2 0 3272 2956 235 278 0 0 chr15 63181985 63182039 -38198482 + (CTCG)n Simple_repeat Simple_repeat 3 56 0 674 220 6 0 chr15 63182039 63182216 -38198305 + (CCCA)n Simple_repeat Simple_repeat 3 180 0 377 273 83 8 chr15 63182249 63182370 -38198151 + L2 LINE L2 3182 3311 -2 627 271 51 42 chr15 63182410 63182624 -38197897 - MIR SINE MIR -26 236 21 211 282 29 48 chr15 63182799 63182902 -38197619 + L2 LINE L2 3169 3269 -3 397 255 152 43 chr15 63183323 63183507 -38197014 - MIR SINE MIR 0 262 59 2186 61 79 7 chr15 63183586 63183864 -38196657 + AluSx SINE Alu 9 306 -6 407 319 21 0 chr15 63185036 63185177 -38195344 - MIR3 SINE MIR -2 206 63 264 303 0 0 chr15 63186656 63186732 -38193789 + MIR3 SINE MIR 117 192 -16 182 182 36 55 chr15 63189188 63189243 -38191278 + L2 LINE L2 3027 3080 -192 306 359 72 11 chr15 63190478 63190743 -38189778 + MARNA DNA Mariner 174 454 -132 507 240 133 0 chr15 63190804 63190954 -38189567 - L3 LINE CR1 -90 1487 1318 209 258 183 32 chr15 63191128 63191314 -38189207 - L3 LINE CR1 -314 1263 1050 614 275 74 37 chr15 63191335 63191579 -38188942 - MIR SINE MIR -4 258 6 180 261 87 0 chr15 63191594 63191640 -38188881 - L3 LINE CR1 -549 1028 979 645 270 85 41 chr15 63191994 63192383 -38188138 - L1ME4a LINE L1 0 6121 5716 872 259 47 17 chr15 63192383 63192684 -38187837 - MER46C DNA MER2_type -1 337 28 273 302 12 0 chr15 63192689 63192775 -38187746 - L1ME4a LINE L1 -403 5718 5632 200 33 0 33 chr15 63192807 63192837 -38187684 + (CCCTG)n Simple_repeat Simple_repeat 2 30 0 360 268 142 16 chr15 63195406 63195589 -38184932 - MIR3 SINE MIR 0 208 3 1158 280 102 7 chr15 63195861 63196311 -38184210 + L2 LINE L2 2172 2664 -650 232 367 34 7 chr15 63196515 63196662 -38183859 - L3 LINE CR1 -2 1575 1425 221 226 128 29 chr15 63197185 63197287 -38183234 - MIR3 SINE MIR -19 189 78 443 307 18 12 chr15 63198937 63199103 -38181418 + MER5B DNA MER1_type 9 175 -3 324 291 79 0 chr15 63199522 63199669 -38180852 - MIR SINE MIR -61 147 34 618 274 191 53 chr15 63200404 63200637 -38179884 + MLT1L LTR MaLR 38 237 -378 333 0 0 0 chr15 63200637 63200674 -38179847 + (TC)n Simple_repeat Simple_repeat 1 37 0 618 274 191 53 chr15 63200674 63200932 -38179589 + MLT1L LTR MaLR 237 597 -18 860 263 81 39 chr15 63200990 63201059 -38179462 - L2 LINE L2 0 3313 3248 378 0 0 0 chr15 63201059 63201101 -38179420 + (CA)n Simple_repeat Simple_repeat 2 43 0 860 263 81 39 chr15 63201101 63201389 -38179132 - L2 LINE L2 -65 3248 2941 398 351 81 30 chr15 63201411 63201682 -38178839 + L3 LINE CR1 574 858 -719 1915 142 0 30 chr15 63201790 63202085 -38178436 - AluJb SINE Alu -22 290 5 199 231 135 0 chr15 63202169 63202221 -38178300 - L2 LINE L2 -19 3294 3236 590 239 126 59 chr15 63202255 63202494 -38178027 + MER112 DNA MER1_type 1 255 -5 643 149 0 9 chr15 63202645 63202759 -38177762 + L1MB3 LINE L1 6067 6179 -4 1171 221 71 22 chr15 63202838 63202988 -38177533 + L1ME3 LINE L1 5796 5937 -225 239 0 32 0 chr15 63202988 63203019 -38177502 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1171 221 71 22 chr15 63203019 63203199 -38177322 + L1ME3 LINE L1 5937 6154 -8 355 305 92 29 chr15 63203712 63203886 -38176635 + L3 LINE CR1 1287 1471 -106 250 235 226 35 chr15 63204653 63204768 -38175753 + MER91C DNA MER1_type 4 140 0 555 293 14 7 chr15 63204798 63204938 -38175583 + MIR3 SINE MIR 6 146 -62 306 371 56 0 chr15 63205577 63205755 -38174766 + MIR SINE MIR 20 207 -55 243 349 0 34 chr15 63205896 63206071 -38174450 + CT-rich Low_complexity Low_complexity 5 173 0 1800 250 149 5 chr15 63206400 63207182 -38173339 + L2 LINE L2 2170 3066 -247 188 303 13 40 chr15 63207185 63207261 -38173260 + L2 LINE L2 3235 3308 -5 2403 68 0 10 chr15 63207751 63208083 -38172438 + AluSp SINE Alu 1 313 0 343 284 163 14 chr15 63208351 63208727 -38171794 + L2 LINE L2 2615 3049 -223 772 221 25 114 chr15 63208821 63209084 -38171437 + MER33 DNA MER1_type 1 212 -2373 2276 101 0 41 chr15 63209084 63209400 -38171121 + AluSx SINE Alu 1 303 -9 772 221 25 114 chr15 63209400 63209503 -38171018 + MER33 DNA MER1_type 212 323 -1 243 222 19 0 chr15 63210908 63210962 -38169559 + MIR SINE MIR 93 147 -115 501 263 71 68 chr15 63211113 63211493 -38169028 + LTR16A1 LTR ERVL 55 435 -22 228 320 10 39 chr15 63213142 63213245 -38167276 + MIR SINE MIR 44 143 -119 186 328 109 23 chr15 63215301 63215429 -38165092 - MIR3 SINE MIR -17 191 53 463 179 24 6 chr15 63215783 63215950 -38164571 + GA-rich Low_complexity Low_complexity 1 169 0 378 285 14 28 chr15 63216885 63217029 -38163492 - MER103 DNA DNA -3 163 22 385 242 169 0 chr15 63217792 63217916 -38162605 + MER117 DNA MER1_type 40 184 -13 474 235 17 8 chr15 63218050 63218169 -38162352 + L2 LINE L2 3188 3307 -6 259 288 24 48 chr15 63220006 63220131 -38160390 - MIR3 SINE MIR -19 189 68 445 284 98 31 chr15 63220138 63220363 -38160158 + MIR SINE MIR 17 256 -6 368 289 26 0 chr15 63221031 63221145 -38159376 + MIR3 SINE MIR 70 186 -22 265 306 189 6 chr15 63221241 63221399 -38159122 + MIR SINE MIR 12 203 -59 1743 162 27 17 chr15 63221935 63222232 -38158289 + AluJb SINE Alu 1 300 -12 348 302 0 0 chr15 63222254 63222360 -38158161 + L1ME4a LINE L1 5733 5838 -283 320 285 32 85 chr15 63222528 63222741 -38157780 + L1ME4a LINE L1 5837 6037 -84 1796 159 34 3 chr15 63222741 63223037 -38157484 - AluJb SINE Alu -7 305 1 320 285 32 85 chr15 63223037 63223069 -38157452 + L1ME4a LINE L1 6037 6069 -52 830 230 0 24 chr15 63223093 63223258 -38157263 + FRAM SINE Alu 1 152 -24 515 270 13 38 chr15 63223808 63223967 -38156554 + MIR SINE MIR 20 174 -88 211 310 56 0 chr15 63226266 63226337 -38154184 - MIR SINE MIR -74 188 114 513 0 0 0 chr15 63226421 63226478 -38154043 + (TG)n Simple_repeat Simple_repeat 1 57 0 180 0 0 0 chr15 63226477 63226497 -38154024 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 247 260 77 10 chr15 63226630 63226698 -38153823 + MIR3 SINE MIR 78 157 -51 709 200 87 16 chr15 63226698 63226883 -38153638 - MER105 DNA DNA -2 202 5 247 260 77 10 chr15 63226883 63226918 -38153603 + MIR3 SINE MIR 157 188 -20 323 221 39 13 chr15 63227896 63227973 -38152548 + MIR SINE MIR 41 119 -89 241 313 39 47 chr15 63228039 63228167 -38152354 + MIR SINE MIR 36 162 -100 255 257 46 37 chr15 63228372 63228481 -38152040 - MIR SINE MIR -77 131 22 536 247 0 58 chr15 63229323 63229497 -38151024 + MER5B DNA MER1_type 13 176 -2 332 287 139 0 chr15 63230032 63230133 -38150388 - L2 LINE L2 0 3313 3199 233 227 76 0 chr15 63230121 63230187 -38150334 - MIR3 SINE MIR -37 171 101 * 629 242 143 36 chr15 63230916 63231139 -38149382 + MIR SINE MIR 14 260 -2 388 309 22 45 chr15 63231265 63231443 -38149078 + MIR SINE MIR 76 249 -13 287 306 90 9 chr15 63231837 63231948 -38148573 - MER5C DNA MER1_type -200 124 5 209 311 131 0 chr15 63232707 63232829 -38147692 - L2 LINE L2 -221 3051 2914 283 366 49 0 chr15 63232955 63233078 -38147443 - L2 LINE L2 -543 2771 2643 234 337 27 41 chr15 63234060 63234173 -38146348 + MIR SINE MIR 49 159 -69 207 286 63 0 chr15 63234495 63234558 -38145963 + MIR SINE MIR 85 151 -57 357 24 0 0 chr15 63235784 63235826 -38144695 + (GGAA)n Simple_repeat Simple_repeat 1 42 0 240 274 0 14 chr15 63235845 63235918 -38144603 - MIR3 SINE MIR -6 202 131 329 230 0 14 chr15 63235918 63235992 -38144529 + AluJb SINE Alu 208 280 -22 423 0 0 0 chr15 63235992 63236039 -38144482 + (GA)n Simple_repeat Simple_repeat 1 47 0 368 294 87 22 chr15 63236564 63236748 -38143773 + MIR3 SINE MIR 11 206 -2 2406 92 0 3 chr15 63238460 63238765 -38141756 + AluSc SINE Alu 1 304 -5 208 83 28 0 chr15 63238870 63238906 -38141615 + (TA)n Simple_repeat Simple_repeat 2 38 0 1077 173 0 0 chr15 63238908 63239081 -38141440 + FRAM SINE Alu 1 170 -6 656 191 56 0 chr15 63239127 63239253 -38141268 + FLAM_A SINE Alu 1 133 0 230 98 98 20 chr15 63239316 63239367 -38141154 + T-rich Low_complexity Low_complexity 4 58 0 1444 116 0 10 chr15 63240144 63240342 -38140179 - AluSq SINE Alu -19 294 99 1793 125 98 24 chr15 63240356 63240733 -38139788 - L1MC4 LINE L1 -319 7723 7319 1336 133 38 0 chr15 63240806 63241016 -38139505 - AluSx SINE Alu -94 218 1 24 0 0 0 chr15 63241309 63241333 -38139188 + AT_rich Low_complexity Low_complexity 1 24 0 469 117 13 13 chr15 63242133 63242210 -38138311 - AluJ/FRAM SINE Alu -14 298 222 376 221 14 62 chr15 63242228 63242303 -38138218 - L1MC4 LINE L1 -215 7827 7761 1876 89 38 20 chr15 63242303 63242595 -38137926 - AluSc SINE Alu -12 297 1 376 221 14 62 chr15 63242595 63242664 -38137857 - L1MC4 LINE L1 -281 7761 7690 295 192 19 0 chr15 63242711 63242772 -38137749 - LTR49 LTR ERV1 0 595 545 1998 127 272 45 chr15 63242887 63243376 -38137145 - LTR29 LTR ERV1 -22 600 1 527 153 72 0 chr15 63243376 63243487 -38137034 + MER3 DNA MER1_type 30 148 -61 414 238 7 82 chr15 63243540 63243687 -38136834 - L1MC4 LINE L1 -517 7525 7390 228 385 62 10 chr15 63243888 63243984 -38136537 - L2 LINE L2 -36 3236 3136 1801 95 4 0 chr15 63244347 63244590 -38135931 - AluSx SINE Alu -16 296 53 2313 81 0 0 chr15 63247228 63247526 -38132995 - AluY SINE Alu -13 298 1 317 238 256 37 chr15 63248610 63248774 -38131747 + MIR3 SINE MIR 6 205 -3 23 33 0 0 chr15 63249168 63249198 -38131323 + AT_rich Low_complexity Low_complexity 1 30 0 264 164 131 0 chr15 63250199 63250218 -38130303 - MER46A DNA MER2_type -71 165 139 990 135 70 0 chr15 63250218 63250374 -38130147 + Tigger4(Zombi) DNA MER2_type 1 167 -2564 3644 96 41 6 chr15 63250380 63250921 -38129600 + Tigger4(Zombi) DNA MER2_type 2172 2731 0 52 58 0 0 chr15 63251059 63251146 -38129375 + AT_rich Low_complexity Low_complexity 1 87 0 2459 52 0 13 chr15 63251903 63252212 -38128309 - AluY SINE Alu -6 305 1 256 281 31 78 chr15 63252896 63253024 -38127497 - MIR3 SINE MIR -3 205 84 21 36 0 0 chr15 63253346 63253374 -38127147 + AT_rich Low_complexity Low_complexity 1 28 0 489 276 79 8 chr15 63256371 63256544 -38123977 - MIR SINE MIR -54 208 18 659 172 0 0 chr15 63256577 63256676 -38123845 - FLAM_A SINE Alu -43 99 1 220 242 44 121 chr15 63257797 63257888 -38122633 - MIR SINE MIR -60 148 65 218 289 113 41 chr15 63259014 63259111 -38121410 - MIR SINE MIR -109 153 50 325 300 82 0 chr15 63259957 63260067 -38120454 - MIR3 SINE MIR -4 204 86 591 278 59 24 chr15 63260648 63260817 -38119704 - MIR3 SINE MIR -14 194 20 238 324 0 14 chr15 63261387 63261458 -38119063 - MIR3 SINE MIR -25 183 114 457 304 25 32 chr15 63261870 63262028 -38118493 + MER5A DNA MER1_type 26 182 -7 376 266 52 52 chr15 63261873 63262046 -38118475 - MER5A DNA MER1_type -16 173 1 * 2068 124 0 0 chr15 63262072 63262362 -38118159 - AluSx SINE Alu -22 290 1 314 253 48 12 chr15 63262523 63262606 -38117915 - MIR SINE MIR -112 150 65 2086 115 7 7 chr15 63264459 63264764 -38115757 - AluSx SINE Alu -7 305 1 402 282 73 8 chr15 63264913 63265037 -38115484 - MIR SINE MIR -57 151 20 189 107 0 0 chr15 63266506 63266534 -38113987 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 347 241 116 14 chr15 63267498 63267651 -38112870 - MIR SINE MIR -62 146 20 2102 107 0 3 chr15 63268582 63268880 -38111641 - AluSc SINE Alu -12 297 1 223 267 67 44 chr15 63269923 63270013 -38110508 + L2 LINE L2 3151 3242 -30 510 275 66 36 chr15 63271393 63271560 -38108961 - MIR SINE MIR -43 219 48 211 284 104 0 chr15 63271596 63271663 -38108858 + MIR SINE MIR 118 191 -71 253 267 0 69 chr15 63272027 63272128 -38108393 - MIR SINE MIR -1 261 168 301 331 47 61 chr15 63272212 63272360 -38108161 - MIR SINE MIR -80 182 37 251 185 37 0 chr15 63274146 63274200 -38106321 + GA-rich Low_complexity Low_complexity 4 59 0 270 239 82 55 chr15 63275480 63275631 -38104890 - MIR3 SINE MIR -84 124 4 1419 103 33 14 chr15 63276512 63276725 -38103796 - Tigger1 DNA MER2_type 0 2418 2202 547 164 37 122 chr15 63276702 63276806 -38103715 - Tigger1 DNA MER2_type -2245 173 91 * 1850 107 81 0 chr15 63276806 63277078 -38103443 - AluSx SINE Alu -18 294 1 547 164 37 122 chr15 63277078 63277162 -38103359 - Tigger1 DNA MER2_type -2327 91 1 440 163 88 0 chr15 63277215 63277295 -38103226 - MIR SINE MIR -108 154 68 183 269 254 0 chr15 63277289 63277356 -38103165 + MIR SINE MIR 64 147 -115 * 388 183 42 0 chr15 63278333 63278404 -38102117 + L3 LINE CR1 1401 1474 -103 448 282 100 24 chr15 63278762 63278932 -38101589 - MER63A DNA MER1_type 0 210 28 255 310 92 0 chr15 63278948 63279090 -38101431 + MER117 DNA MER1_type 9 163 -34 231 322 4 0 chr15 63279242 63279317 -38101204 + MIR SINE MIR 45 121 -87 390 320 148 20 chr15 63280260 63280504 -38100017 - L2 LINE L2 -189 3083 2809 364 303 0 33 chr15 63280725 63280877 -38099644 + MER112 DNA MER1_type 72 218 -42 203 186 23 0 chr15 63281518 63281561 -38098960 + (TGGG)n Simple_repeat Simple_repeat 2 45 0 1928 131 10 10 chr15 63281794 63282092 -38098429 - AluSx SINE Alu -8 304 7 182 229 16 49 chr15 63282975 63283036 -38097485 + L2 LINE L2 3004 3062 -210 293 315 79 0 chr15 63283185 63283274 -38097247 + L2 LINE L2 3161 3256 -16 263 299 15 0 chr15 63283453 63283520 -38097001 + MIR3 SINE MIR 120 187 -21 197 250 0 0 chr15 63283562 63283602 -38096919 - L2 LINE L2 -9 3263 3224 885 184 188 14 chr15 63284336 63284543 -38095978 - MIR SINE MIR -14 248 6 873 289 91 42 chr15 63284556 63285252 -38095269 - L2 LINE L2 -50 3222 2510 280 247 11 43 chr15 63285349 63285442 -38095079 + L2 LINE L2 3223 3312 -1 274 278 56 0 chr15 63285933 63286005 -38094516 + L3 LINE CR1 984 1059 -518 586 216 149 31 chr15 63286125 63286347 -38094174 - MIR SINE MIR -2 260 13 428 228 95 63 chr15 63286533 63286691 -38093830 + MER117 DNA MER1_type 30 192 -5 242 333 111 26 chr15 63286691 63286808 -38093713 - MIR3 SINE MIR -68 140 14 280 263 0 25 chr15 63287203 63287283 -38093238 - MIR3 SINE MIR -121 87 10 683 253 100 16 chr15 63287617 63287866 -38092655 + LTR33A LTR ERVL 254 523 0 2138 197 120 46 chr15 63288166 63288749 -38091772 + MLT1E2 LTR MaLR 1 626 0 370 275 129 47 chr15 63288943 63289114 -38091407 - MIR SINE MIR 0 262 78 515 274 123 56 chr15 63289181 63289572 -38090949 - LTR16A LTR ERVL -10 440 24 351 267 170 0 chr15 63290044 63290179 -38090342 + MIR3 SINE MIR 30 187 -21 237 351 11 11 chr15 63290793 63290887 -38089634 - MIR SINE MIR -72 136 43 621 301 28 11 chr15 63290894 63291131 -38089390 + MIR SINE MIR 19 255 -7 4361 146 68 56 chr15 63291330 63291409 -38089112 + MER21B LTR ERV1 3 80 -783 207 0 0 0 chr15 63291409 63291432 -38089089 + (TTGG)n Simple_repeat Simple_repeat 1 23 0 2251 69 3 3 chr15 63291432 63291720 -38088801 - AluSp SINE Alu -25 288 1 4361 146 68 56 chr15 63291720 63292208 -38088313 + MER21B LTR ERV1 80 587 -276 2416 90 0 10 chr15 63292208 63292520 -38088001 + AluSc SINE Alu 1 309 0 4361 146 68 56 chr15 63292520 63292801 -38087720 + MER21B LTR ERV1 587 863 0 244 286 60 45 chr15 63293454 63293587 -38086934 + L2 LINE L2 3170 3304 -9 221 284 64 55 chr15 63293679 63293788 -38086733 - L2 LINE L2 -8 3264 3155 261 296 93 46 chr15 63293830 63293938 -38086583 + L2 LINE L2 3159 3271 -42 186 143 29 0 chr15 63295113 63295148 -38085373 + MIR3 SINE MIR 153 188 -20 674 287 0 0 chr15 63295336 63295493 -38085028 - MIR3 SINE MIR -18 190 34 290 258 0 0 chr15 63296541 63296607 -38083914 - L2 LINE L2 0 3313 3248 201 231 0 19 chr15 63296625 63296664 -38083857 + MIR3 SINE MIR 151 190 -18 2508 83 0 0 chr15 63296664 63296964 -38083557 - AluSg SINE Alu -10 300 1 201 231 0 19 chr15 63296964 63296976 -38083545 + MIR3 SINE MIR 190 201 -7 202 300 0 0 chr15 63297073 63297133 -38083388 + L2 LINE L2 3182 3241 -72 316 244 35 0 chr15 63297147 63297233 -38083288 - L2 LINE L2 0 3313 3225 784 235 6 0 chr15 63298048 63298218 -38082303 + MER91B DNA MER1_type 4 174 -16 1639 141 25 104 chr15 63298305 63298631 -38081890 + AluYb8 SINE Alu 1 300 -18 204 158 0 0 chr15 63299691 63299729 -38080792 + (ATG)n Simple_repeat Simple_repeat 1 38 0 221 0 0 33 chr15 63300103 63300133 -38080388 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2227 95 34 0 chr15 63300145 63300441 -38080080 - AluSq SINE Alu 0 313 8 263 279 80 107 chr15 63301251 63301691 -38078830 - L2 LINE L2 -3 3269 2842 2325 98 10 0 chr15 63302069 63302366 -38078155 - AluSx SINE Alu -12 300 1 952 222 49 0 chr15 63303055 63303280 -38077241 + MIR SINE MIR 17 252 -10 343 259 45 27 chr15 63303431 63303543 -38076978 - MIR3 SINE MIR -85 123 10 1902 101 51 4 chr15 63303607 63303864 -38076657 - AluSx SINE Alu -43 269 1 281 158 171 24 chr15 63304651 63304733 -38075788 + MIR SINE MIR 134 227 -35 363 279 115 18 chr15 63305380 63305545 -38074976 + MIR3 SINE MIR 17 197 -11 530 243 85 26 chr15 63305566 63305755 -38074766 - MIR SINE MIR -43 219 20 569 293 68 5 chr15 63305798 63305989 -38074532 - MIR SINE MIR -5 257 55 686 226 33 106 chr15 63307338 63307474 -38073047 - MIR SINE MIR 0 262 118 1642 164 26 11 chr15 63307474 63307742 -38072779 + AluJb SINE Alu 1 272 -40 426 20 0 0 chr15 63307748 63307799 -38072722 + (CA)n Simple_repeat Simple_repeat 2 52 0 686 226 33 106 chr15 63307799 63307929 -38072592 - MIR SINE MIR -149 113 9 285 273 73 55 chr15 63308351 63308496 -38072025 - L2 LINE L2 -219 3053 2912 881 140 206 133 chr15 63308496 63308576 -38071945 + MER44D DNA MER2_type 2 75 -2416 2222 109 0 0 chr15 63308576 63308891 -38071630 + AluSx SINE Alu 1 315 0 881 140 206 133 chr15 63308891 63308937 -38071584 + MER44D DNA MER2_type 75 116 -2375 1453 151 37 49 chr15 63308937 63309182 -38071339 + AluJo SINE Alu 50 291 -21 881 140 206 133 chr15 63309182 63309368 -38071153 + MER44D DNA MER2_type 116 609 0 285 273 73 55 chr15 63309368 63309442 -38071079 - L2 LINE L2 -360 2912 2830 186 200 100 0 chr15 63309885 63309945 -38070576 - MIR SINE MIR -92 170 105 231 328 162 25 chr15 63310341 63310545 -38069976 - MIR SINE MIR -2 260 29 335 284 34 22 chr15 63310587 63310725 -38069796 + MIR SINE MIR 67 204 -31 297 315 0 0 chr15 63311234 63311307 -38069214 - MIR3 SINE MIR -50 158 86 631 112 79 73 chr15 63312594 63312634 -38067887 - MER33 DNA MER1_type -2356 229 191 2118 143 13 0 chr15 63312634 63312934 -38067587 + AluSx SINE Alu 1 304 -8 297 0 0 0 chr15 63312934 63312967 -38067554 + (TA)n Simple_repeat Simple_repeat 2 34 0 189 0 0 0 chr15 63312966 63312987 -38067534 + (CA)n Simple_repeat Simple_repeat 2 22 0 631 112 79 73 chr15 63312967 63313123 -38067398 - MER33 DNA MER1_type -2393 192 51 335 267 212 14 chr15 63313236 63313382 -38067139 - MER5B DNA MER1_type 0 178 4 569 178 0 0 chr15 63313403 63313504 -38067017 + MER5A DNA MER1_type 9 109 -80 585 262 97 32 chr15 63313538 63313761 -38066760 - MIR SINE MIR -26 236 2 913 299 119 21 chr15 63313910 63314439 -38066082 + L1ME4a LINE L1 5356 5936 -185 319 234 32 21 chr15 63315079 63315173 -38065348 - MIR SINE MIR -80 128 34 999 236 206 5 chr15 63315641 63316014 -38064507 + LTR16B LTR ERVL 17 464 0 408 266 97 0 chr15 63316323 63316447 -38064074 + L2 LINE L2 3137 3272 0 245 269 39 13 chr15 63316452 63316530 -38063991 + MIR3 SINE MIR 76 155 -53 637 214 48 0 chr15 63316744 63316889 -38063632 + L1ME4a LINE L1 5606 5757 -364 546 195 105 63 chr15 63316891 63317081 -38063440 - MIR SINE MIR -27 235 38 530 259 119 73 chr15 63317116 63317460 -38063061 + L1ME4a LINE L1 5755 6114 -7 1186 133 0 68 chr15 63319474 63319708 -38060813 + MER20 DNA MER1_type 1 218 -1 216 239 33 54 chr15 63319870 63319962 -38060559 - L2 LINE L2 -21 3251 3162 260 225 42 14 chr15 63320446 63320517 -38060004 + L2 LINE L2 2982 3054 -218 404 238 32 95 chr15 63320585 63320774 -38059747 + MER104 DNA MER2_type 4 180 0 183 176 0 0 chr15 63321586 63321620 -38058901 + MIR3 SINE MIR 160 193 -15 21 0 0 0 chr15 63322557 63322578 -38057943 + AT_rich Low_complexity Low_complexity 1 21 0 1000 208 56 80 chr15 63322597 63323010 -38057511 + MLT1A1 LTR MaLR 2 365 0 800 133 63 0 chr15 63323011 63323154 -38057367 - L1MB3 LINE L1 -22 6161 6010 2057 94 36 4 chr15 63323184 63323459 -38057062 - AluSc SINE Alu -15 294 11 619 230 14 0 chr15 63323472 63323611 -38056910 + MER104 DNA Tc2 36 176 -4 392 259 44 37 chr15 63324264 63324399 -38056122 + MIR SINE MIR 124 259 -3 245 325 89 25 chr15 63325098 63325255 -38055266 - MIR SINE MIR -37 171 5 282 221 19 82 chr15 63325264 63325422 -38055099 + GA-rich Low_complexity Low_complexity 4 151 0 211 353 15 0 chr15 63328051 63328119 -38052402 - L2 LINE L2 0 3313 3245 4431 249 135 52 chr15 63328249 63329602 -38050919 + HAL1 LINE L1 11 1251 -1256 844 158 0 0 chr15 63329602 63329735 -38050786 + FLAM_C SINE Alu 1 133 0 4431 249 135 52 chr15 63329735 63330018 -38050503 + HAL1 LINE L1 1251 1509 -998 2308 87 26 19 chr15 63330018 63330329 -38050192 + AluSp SINE Alu 1 313 0 4431 249 135 52 chr15 63330329 63330649 -38049872 + HAL1 LINE L1 1509 1801 -706 1009 161 0 0 chr15 63330649 63330811 -38049710 + FAM SINE Alu 2 163 -12 4431 249 135 52 chr15 63330811 63331138 -38049383 + HAL1 LINE L1 1801 2485 -22 2122 128 14 3 chr15 63331550 63331846 -38048675 + AluSx SINE Alu 1 299 -13 2347 107 0 3 chr15 63332025 63332323 -38048198 - AluSq SINE Alu -16 297 1 946 185 0 0 chr15 63332327 63332473 -38048048 - FRAM SINE Alu -30 146 1 606 320 39 13 chr15 63332756 63332987 -38047534 + MIR SINE MIR 20 256 -6 2135 154 24 24 chr15 63333187 63333217 -38047304 + MLT1B LTR MaLR 5 34 -356 2490 84 7 0 chr15 63333217 63333515 -38047006 - AluSx SINE Alu -12 300 1 2135 154 24 24 chr15 63333515 63333867 -38046654 + MLT1B LTR MaLR 33 387 -3 2292 84 0 50 chr15 63334046 63334366 -38046155 + AluY SINE Alu 1 304 -7 2309 106 0 0 chr15 63334411 63334703 -38045818 + AluSx SINE Alu 1 292 -20 192 125 0 0 chr15 63334879 63334911 -38045610 + (A)n Simple_repeat Simple_repeat 1 32 0 1887 154 23 7 chr15 63335087 63335386 -38045135 + AluSx SINE Alu 1 304 -8 282 309 14 11 chr15 63335455 63335602 -38044919 - MIR SINE MIR -66 142 3 383 220 130 0 chr15 63335704 63335804 -38044717 + MIR SINE MIR 30 142 -66 703 120 40 48 chr15 63335907 63336032 -38044489 + FLAM_C SINE Alu 1 124 -9 300 284 127 30 chr15 63336094 63336228 -38044293 + L1MDa LINE L1 1265 1411 -5129 288 272 38 28 chr15 63336341 63336501 -38044020 - L1ME LINE L1 -637 5484 5369 1097 178 113 57 chr15 63336572 63336819 -38043702 - AluSx SINE Alu -48 264 4 25 0 0 0 chr15 63336835 63336860 -38043661 + AT_rich Low_complexity Low_complexity 1 25 0 1410 117 136 97 chr15 63336918 63337227 -38043294 + LTR2B LTR ERV1 1 321 -169 185 319 32 53 chr15 63337363 63337457 -38043064 + L3 LINE CR1 1346 1437 -140 1481 117 5 5 chr15 63337582 63337787 -38042734 - AluSg/x SINE Alu -10 300 96 183 80 0 0 chr15 63338886 63338911 -38041610 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 571 278 28 17 chr15 63338912 63339088 -38041433 + MIR3 SINE MIR 27 204 -4 261 211 233 11 chr15 63339287 63339377 -38041144 - MER5A DNA MER1_type -22 167 58 299 186 17 0 chr15 63340078 63340137 -38040384 - MER5A DNA MER1_type -14 175 116 328 240 21 31 chr15 63340322 63340418 -38040103 - MIR SINE MIR -68 140 46 2022 138 20 0 chr15 63340500 63340804 -38039717 - AluSx SINE Alu -2 310 1 230 388 31 0 chr15 63341262 63341391 -38039130 - L2 LINE L2 -214 3058 2926 204 239 0 43 chr15 63342245 63342337 -38038184 + (CCCCG)n Simple_repeat Simple_repeat 5 92 0 463 200 0 0 chr15 63343756 63343831 -38036690 - MER81 DNA DNA -36 78 4 2209 129 3 3 chr15 63344351 63344660 -38035861 + AluSx SINE Alu 1 309 -3 2301 99 0 0 chr15 63344864 63345178 -38035343 - AluSx SINE Alu 0 314 1 522 244 62 12 chr15 63345186 63345346 -38035175 - MIR SINE MIR -11 251 84 188 185 37 56 chr15 63345803 63345857 -38034664 - L2 LINE L2 -2 3270 3218 201 238 0 0 chr15 63346019 63346061 -38034460 + (TG)n Simple_repeat Simple_repeat 1 42 0 2286 81 0 4 chr15 63346063 63346336 -38034185 - AluSq SINE Alu -15 298 27 1093 122 0 6 chr15 63346896 63347052 -38033469 - AluSg/x SINE Alu -2 310 156 193 337 22 0 chr15 63347274 63347366 -38033155 - MIR SINE MIR -5 257 164 2308 151 31 24 chr15 63347596 63347810 -38032711 - L1MB4 LINE L1 0 6180 5969 2234 127 7 0 chr15 63347810 63348118 -38032403 - AluSg SINE Alu 0 310 1 2000 141 7 7 chr15 63348118 63348417 -38032104 - AluSg SINE Alu -11 299 1 2308 151 31 24 chr15 63348417 63348712 -38031809 - L1MB4 LINE L1 -210 5970 5666 547 270 7 20 chr15 63349086 63349234 -38031287 - MER5B DNA MER1_type 0 178 33 242 270 54 0 chr15 63349829 63349903 -38030618 + MIR3 SINE MIR 81 158 -50 1613 165 18 64 chr15 63350021 63350348 -38030173 + AluJo SINE Alu 1 312 0 1890 176 7 0 chr15 63350378 63350674 -38029847 + AluJb SINE Alu 1 298 -14 353 313 60 12 chr15 63350712 63350878 -38029643 + L1MCa LINE L1 2226 2399 -4027 252 214 86 0 chr15 63351474 63351544 -38028977 - MIR SINE MIR -89 173 98 1015 175 42 60 chr15 63351548 63351765 -38028756 - MER20 DNA MER1_type 0 219 7 423 281 62 0 chr15 63351806 63351934 -38028587 - MIR3 SINE MIR -35 173 38 276 354 39 8 chr15 63352864 63352991 -38027530 - MIR SINE MIR -55 207 77 186 313 45 0 chr15 63353999 63354066 -38026455 + MIR3 SINE MIR 93 162 -46 181 275 29 29 chr15 63354269 63354338 -38026183 - L3b LINE CR1 -177 1406 1338 265 246 0 14 chr15 63355365 63355434 -38025087 - MER5C DNA MER1_type 0 324 257 470 214 68 8 chr15 63355570 63355687 -38024834 - MER5C DNA MER1_type -200 124 1 412 224 224 0 chr15 63355971 63356105 -38024416 - MIR SINE MIR -10 252 89 421 331 7 13 chr15 63356167 63356321 -38024200 + MIR3 SINE MIR 33 185 -23 2255 116 0 0 chr15 63356592 63356885 -38023636 - AluSx SINE Alu -9 303 11 299 289 44 24 chr15 63356897 63357041 -38023480 - MIR SINE MIR -72 136 46 212 380 33 0 chr15 63357284 63357434 -38023087 + L3b LINE CR1 1211 1365 -218 297 211 211 35 chr15 63357445 63357559 -38022962 - L2 LINE L2 -1 3271 3138 1006 214 99 51 chr15 63357573 63357867 -38022654 + L2 LINE L2 3006 3313 0 243 320 78 55 chr15 63357840 63358187 -38022334 - L2 LINE L2 -132 3181 2827 * 1649 165 60 7 chr15 63359154 63359439 -38021082 - AluJo SINE Alu -12 300 1 518 265 103 29 chr15 63359637 63359841 -38020680 + MIR SINE MIR 28 246 -16 256 88 0 0 chr15 63360013 63360047 -38020474 - LTR16C LTR ERVL -3 488 455 380 218 57 24 chr15 63360119 63360243 -38020278 - LTR16C LTR ERVL -177 314 187 1564 181 44 24 chr15 63360368 63360661 -38019860 + AluJo SINE Alu 1 299 -13 290 293 0 57 chr15 63360671 63360777 -38019744 + L2 LINE L2 3173 3272 0 229 171 0 0 chr15 63361374 63361415 -38019106 - MER91 DNA MER1_type -155 41 1 652 261 139 9 chr15 63362601 63362831 -38017690 + MIR SINE MIR 2 261 -1 443 341 73 0 chr15 63362926 63363090 -38017431 - MIR3 SINE MIR -13 195 20 2312 118 0 10 chr15 63363090 63363403 -38017118 - AluSx SINE Alu -2 310 1 218 348 53 16 chr15 63363678 63363922 -38016599 + L2 LINE L2 2610 2862 -452 310 318 0 0 chr15 63364335 63364420 -38016101 + MIR3 SINE MIR 106 190 -18 320 237 86 32 chr15 63364577 63364670 -38015851 + L1MC5 LINE L1 7831 7928 -33 448 306 48 0 chr15 63364754 63364901 -38015620 + L3 LINE CR1 1405 1558 -19 1085 158 0 0 chr15 63365050 63365221 -38015300 + FAM SINE Alu 1 171 -4 301 348 14 14 chr15 63365366 63365507 -38015014 + MIR3 SINE MIR 23 163 -45 271 276 102 10 chr15 63365952 63366050 -38014471 + MIR SINE MIR 25 131 -77 337 194 65 89 chr15 63366141 63366265 -38014256 + MIR SINE MIR 80 200 -62 1721 180 3 11 chr15 63367577 63367886 -38012635 + AluJb SINE Alu 1 307 0 270 278 0 78 chr15 63367914 63368004 -38012517 - L2 LINE L2 -1 3271 3189 420 111 0 0 chr15 63368498 63368561 -38011960 + (CA)n Simple_repeat Simple_repeat 2 64 0 336 297 32 26 chr15 63368571 63368655 -38011866 - MIR3 SINE MIR -50 158 71 1853 196 0 0 chr15 63368655 63368951 -38011570 + AluJo SINE Alu 5 300 -12 336 297 32 26 chr15 63368951 63369021 -38011500 - MIR3 SINE MIR -137 71 3 207 0 0 0 chr15 63369351 63369374 -38011147 + (T)n Simple_repeat Simple_repeat 1 23 0 2432 77 0 7 chr15 63369703 63370003 -38010518 - AluY SINE Alu -13 298 1 1309 91 54 54 chr15 63370183 63370305 -38010216 + MER30 DNA MER1_type 4 128 -102 2262 118 7 0 chr15 63370305 63370601 -38009920 - AluSx SINE Alu -13 299 2 1309 91 54 54 chr15 63370601 63370699 -38009822 + MER30 DNA MER1_type 127 224 -6 316 285 7 69 chr15 63371381 63371525 -38008996 + MIR3 SINE MIR 7 141 -67 395 282 73 0 chr15 63371683 63371807 -38008714 + MIR SINE MIR 90 222 -40 207 0 0 0 chr15 63371840 63371863 -38008658 + (TTA)n Simple_repeat Simple_repeat 1 23 0 404 246 94 35 chr15 63371863 63372034 -38008487 + L1ME4a LINE L1 5735 5915 -206 1258 148 89 0 chr15 63372072 63372274 -38008247 + AluJo SINE Alu 1 220 -92 236 167 0 0 chr15 63372274 63372316 -38008205 + Alu SINE Alu 86 127 -175 415 283 72 13 chr15 63373112 63373264 -38007257 - MIR3 SINE MIR -28 180 20 264 270 16 107 chr15 63373627 63373766 -38006755 - MIR SINE MIR -49 159 26 265 375 53 18 chr15 63373986 63374269 -38006252 - L2 LINE L2 -469 2845 2553 507 142 72 9 chr15 63374346 63374479 -38006042 - MLT1C LTR MaLR -314 156 12 923 237 10 5 chr15 63375040 63375247 -38005274 + MER63A DNA MER1_type 1 208 -2 220 328 16 0 chr15 63375453 63375517 -38005004 + MIR SINE MIR 48 112 -150 214 328 84 8 chr15 63375530 63375649 -38004872 - L2 LINE L2 -2 3270 3143 256 224 164 35 chr15 63375684 63375800 -38004721 + MIR SINE MIR 122 252 -10 298 178 0 78 chr15 63376245 63376335 -38004186 - L1MC5 LINE L1 -107 7854 7772 189 0 0 0 chr15 63376593 63376614 -38003907 + (T)n Simple_repeat Simple_repeat 1 21 0 283 247 0 0 chr15 63376772 63376845 -38003676 + MIR SINE MIR 180 252 -10 23 0 0 0 chr15 63376865 63376888 -38003633 + AT_rich Low_complexity Low_complexity 1 23 0 228 285 82 18 chr15 63377508 63377623 -38002898 - MIR SINE MIR -63 145 20 353 324 0 0 chr15 63378698 63378846 -38001675 + (TG)n Simple_repeat Simple_repeat 1 148 0 190 226 19 0 chr15 63379811 63379864 -38000657 + MIR SINE MIR 78 131 -77 1501 262 57 20 chr15 63380181 63380669 -37999852 + MLT1K LTR MaLR 80 585 -3 2596 65 0 0 chr15 63380833 63381139 -37999382 + AluY SINE Alu 1 306 -5 259 342 72 0 chr15 63381365 63381476 -37999045 + MIR3 SINE MIR 90 208 0 206 315 11 33 chr15 63381582 63381674 -37998847 + L3 LINE CR1 1481 1570 -7 1652 178 0 72 chr15 63382635 63382956 -37997565 + AluJb SINE Alu 1 298 -14 1975 129 44 10 chr15 63382958 63383253 -37997268 + AluSq SINE Alu 1 305 -8 357 315 39 0 chr15 63384424 63384554 -37995967 - MIR SINE MIR -60 202 68 458 315 35 20 chr15 63384621 63384824 -37995697 - MIR SINE MIR -23 239 34 321 275 116 16 chr15 63385594 63385736 -37994785 + MIR SINE MIR 13 163 -63 663 200 30 55 chr15 63386102 63386267 -37994254 + MER5B DNA MER1_type 2 162 -16 691 175 150 6 chr15 63386295 63386455 -37994066 - MER5A DNA MER1_type -6 183 1 330 314 14 86 chr15 63386542 63386596 -37993925 + MIR SINE MIR 15 71 -191 2260 100 0 20 chr15 63386596 63386896 -37993625 - AluSc SINE Alu -15 294 1 330 314 14 86 chr15 63386896 63387051 -37993470 + MIR SINE MIR 71 209 -53 235 274 63 80 chr15 63387694 63387869 -37992652 + MER5A DNA MER1_type 18 189 0 355 333 42 18 chr15 63387910 63388078 -37992443 + MIR SINE MIR 21 192 -70 313 262 107 0 chr15 63388274 63388377 -37992144 + L2 LINE L2 3180 3293 -20 1199 284 40 28 chr15 63388387 63388918 -37991603 + L1ME4a LINE L1 5378 5914 -207 513 188 40 0 chr15 63389530 63389631 -37990890 - MER94 DNA DNA -7 127 23 2279 108 3 0 chr15 63390505 63390801 -37989720 - AluSx SINE Alu -15 297 1 435 327 13 6 chr15 63391687 63391843 -37988678 + MIR SINE MIR 2 158 -104 461 136 0 12 chr15 63391847 63391978 -37988543 + MSTD LTR MaLR 1 186 -210 * 2053 125 37 0 chr15 63391975 63392272 -37988249 + MER1B DNA MER1_type 32 339 0 713 199 0 0 chr15 63392272 63392403 -37988118 + MSTD LTR MaLR 266 396 0 3743 204 157 74 chr15 63392403 63392932 -37987589 + MSTD-int LTR MaLR 1 484 -1251 2131 80 8 0 chr15 63392932 63393195 -37987326 + AluY SINE Alu 42 306 -5 3743 204 157 74 chr15 63393195 63393866 -37986655 + MSTD-int LTR MaLR 484 1097 -638 2274 123 0 3 chr15 63393866 63394176 -37986345 - AluSg1 SINE Alu 0 309 1 3743 204 157 74 chr15 63394176 63394479 -37986042 + MSTD-int LTR MaLR 1097 1735 0 2108 142 0 7 chr15 63394491 63394800 -37985721 - AluJb SINE Alu 0 312 6 1608 204 30 30 chr15 63394808 63395204 -37985317 + MSTD LTR MaLR 1 396 0 292 333 0 0 chr15 63395205 63395295 -37985226 + MIR SINE MIR 160 249 -13 222 118 0 0 chr15 63395366 63395400 -37985121 + (CTG)n Simple_repeat Simple_repeat 3 36 0 285 289 30 7 chr15 63395517 63395652 -37984869 + L2 LINE L2 2905 3042 -230 226 285 24 98 chr15 63395754 63395877 -37984644 - L1ME3A LINE L1 -88 6082 5969 545 296 172 16 chr15 63396081 63396453 -37984068 + LTR16C LTR ERVL 62 491 0 414 311 78 5 chr15 63396460 63396653 -37983868 - L1ME3A LINE L1 -287 5883 5677 684 291 42 5 chr15 63397442 63397655 -37982866 + MIR SINE MIR 41 261 -1 379 232 113 60 chr15 63398367 63398518 -37982003 + MIR3 SINE MIR 20 178 -30 336 146 46 172 chr15 63398683 63398834 -37981687 - MIR SINE MIR -111 151 20 495 173 18 55 chr15 63399060 63399170 -37981351 + MER5A DNA MER1_type 2 107 -82 389 257 60 79 chr15 63399538 63399747 -37980774 - MIR SINE MIR -31 231 17 202 303 92 17 chr15 63400915 63400942 -37979579 + L2 LINE L2 3185 3209 -104 406 294 107 59 chr15 63400942 63401129 -37979392 + MER91A DNA MER1_type 1 196 0 202 303 92 17 chr15 63401129 63401220 -37979301 + L2 LINE L2 3209 3312 -1 269 349 9 9 chr15 63401494 63401600 -37978921 + MIR SINE MIR 106 211 -51 1051 213 13 18 chr15 63401681 63401906 -37978615 + MER58A DNA MER1_type 1 224 0 801 190 30 45 chr15 63401906 63402106 -37978415 - MIR SINE MIR -64 198 2 2298 127 3 0 chr15 63402253 63402561 -37977960 - AluSx SINE Alu -3 309 1 1413 195 71 40 chr15 63402684 63403135 -37977386 - MLT1C LTR MaLR -2 465 1 1801 156 33 33 chr15 63404722 63405029 -37975492 + AluJo SINE Alu 6 312 0 489 273 19 54 chr15 63405176 63405381 -37975140 - MLT1J2 LTR MaLR 0 450 253 437 227 12 78 chr15 63405912 63405965 -37974556 - MIR SINE MIR -62 146 91 2374 93 0 0 chr15 63405965 63406254 -37974267 + AluSx SINE Alu 1 289 -23 437 227 12 78 chr15 63406254 63406389 -37974132 - MIR SINE MIR -117 91 19 390 219 0 0 chr15 63407429 63407511 -37973010 + MIR SINE MIR 49 130 -132 * 411 272 88 34 chr15 63407509 63407656 -37972865 + MIR SINE MIR 66 220 -42 2193 113 31 0 chr15 63408098 63408391 -37972130 - AluSx SINE Alu -10 302 1 276 311 19 19 chr15 63408987 63409093 -37971428 - MIR SINE MIR -39 223 118 545 267 0 0 chr15 63410075 63410195 -37970326 - L2 LINE L2 0 3313 3194 22 0 0 0 chr15 63410199 63410221 -37970300 + AT_rich Low_complexity Low_complexity 1 22 0 1059 153 0 0 chr15 63410221 63410371 -37970150 - FRAM SINE Alu -28 148 1 760 261 166 12 chr15 63410376 63410911 -37969610 - L2 LINE L2 -111 3202 2574 335 213 0 156 chr15 63411207 63411367 -37969154 - MIR SINE MIR -11 251 117 192 319 63 63 chr15 63412611 63412802 -37967719 + L2 LINE L2 2898 3088 -184 609 209 68 18 chr15 63412940 63413103 -37967418 + MER5B DNA MER1_type 5 175 -3 381 250 0 0 chr15 63413151 63413275 -37967246 + (TGGA)n Simple_repeat Simple_repeat 4 127 0 2104 131 29 13 chr15 63413866 63414172 -37966349 - AluJb SINE Alu -1 311 1 295 251 60 48 chr15 63414530 63414697 -37965824 + L2 LINE L2 2853 3021 -251 215 323 21 0 chr15 63414974 63415067 -37965454 + GA-rich Low_complexity Low_complexity 4 98 0 449 299 90 12 chr15 63416155 63416322 -37964199 + MER5A DNA MER1_type 10 189 0 437 258 63 31 chr15 63416451 63416610 -37963911 + MIR SINE MIR 93 256 -6 358 279 164 7 chr15 63416872 63417012 -37963509 + MIR3 SINE MIR 40 201 -7 256 282 82 75 chr15 63420597 63420916 -37959605 + L2 LINE L2 2905 3225 -47 1465 204 16 26 chr15 63421774 63422078 -37958443 - AluJo SINE Alu -11 301 1 677 101 92 9 chr15 63422089 63422198 -37958323 - AluJb SINE Alu -188 124 7 361 299 83 19 chr15 63422211 63422368 -37958153 - L2 LINE L2 -244 3069 2903 2093 223 54 37 chr15 63422368 63422884 -37957637 + MLT1E LTR MaLR 67 591 -2 441 242 121 24 chr15 63422884 63423049 -37957472 - L2 LINE L2 -308 3005 2825 605 244 36 0 chr15 63423390 63423558 -37956963 - L2 LINE L2 -563 2751 2578 359 314 123 27 chr15 63423952 63424172 -37956349 - MIR SINE MIR -6 256 16 2129 133 7 3 chr15 63424232 63424533 -37955988 + AluSx SINE Alu 1 302 -10 2150 106 6 42 chr15 63424662 63424973 -37955548 - AluSp SINE Alu -13 300 1 764 224 0 0 chr15 63427154 63427310 -37953211 + MIR SINE MIR 107 262 0 348 327 19 11 chr15 63427499 63427684 -37952837 - MIR SINE MIR -56 206 20 656 276 118 26 chr15 63428067 63428295 -37952226 + MIR SINE MIR 14 262 0 206 294 265 0 chr15 63428302 63428404 -37952117 + L2 LINE L2 3143 3271 -1 884 220 33 6 chr15 63428433 63428615 -37951906 - MER20 DNA MER1_type 0 219 33 632 260 0 26 chr15 63428630 63428784 -37951737 - MIR3 SINE MIR -48 160 11 315 203 0 0 chr15 63429200 63429259 -37951262 + MIR SINE MIR 103 161 -101 331 58 19 0 chr15 63429260 63429312 -37951209 - MADE1 DNA Mariner -1 79 27 696 273 69 9 chr15 63429535 63429766 -37950755 - MIR SINE MIR -6 256 12 1131 228 0 0 chr15 63429913 63430132 -37950389 - MER58A DNA MER1_type -1 223 5 323 252 114 73 chr15 63430866 63430989 -37949532 + MIR SINE MIR 119 246 -16 818 276 105 22 chr15 63432423 63432738 -37947783 + L2 LINE L2 2971 3311 -2 258 200 55 0 chr15 63433929 63433984 -37946537 + L2 LINE L2 3247 3304 -9 684 253 48 45 chr15 63434253 63434604 -37945917 - L1ME3 LINE L1 -208 5962 5700 463 219 50 0 chr15 63434628 63434747 -37945774 - MER112 DNA MER1_type 0 260 136 571 313 69 10 chr15 63434836 63435255 -37945266 - L1ME3 LINE L1 -549 5615 5179 445 266 8 16 chr15 63436076 63436200 -37944321 + L2 LINE L2 3150 3272 0 641 207 0 6 chr15 63436213 63436392 -37944129 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 249 313 97 43 chr15 63437734 63438012 -37942509 - L2 LINE L2 -16 3256 2964 480 229 41 53 chr15 63438227 63438397 -37942124 + MIR SINE MIR 28 195 -67 514 213 167 30 chr15 63438632 63438665 -37941856 - L2 LINE L2 -158 3155 3128 189 0 0 0 chr15 63438665 63438686 -37941835 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 514 213 167 30 chr15 63438686 63438915 -37941606 - L2 LINE L2 -185 3128 2857 749 281 29 12 chr15 63439624 63439870 -37940651 - MIR SINE MIR 0 262 13 286 286 11 11 chr15 63439868 63439959 -37940562 + L2 LINE L2 2968 3058 -214 * 195 118 0 0 chr15 63440385 63440419 -37940102 - L2 LINE L2 0 3313 3280 202 274 42 63 chr15 63440729 63440824 -37939697 + L2 LINE L2 3177 3269 -3 399 314 116 12 chr15 63441224 63441396 -37939125 + MIR SINE MIR 21 210 -52 236 273 0 0 chr15 63441591 63441657 -37938864 + L1MEd LINE L1 80 145 -5974 803 161 153 10 chr15 63441863 63442084 -37938437 + L1MB5 LINE L1 5931 6179 -1 763 250 81 87 chr15 63442275 63442803 -37937718 + L1MEd LINE L1 700 1224 -4895 339 307 45 6 chr15 63442922 63443098 -37937423 + L1MEd LINE L1 1409 1591 -4538 2350 57 43 0 chr15 63443811 63444090 -37936431 + AluY SINE Alu 13 303 -8 1052 121 50 16 chr15 63444099 63444281 -37936240 + MER5A DNA MER1_type 2 189 0 949 242 5 0 chr15 63444456 63444646 -37935875 + MLT1I LTR MaLR 201 391 -18 210 245 0 0 chr15 63444809 63444858 -37935663 + GA-rich Low_complexity Low_complexity 2 50 0 232 250 163 0 chr15 63445180 63445272 -37935249 - MIR3 SINE MIR -91 117 11 259 265 15 0 chr15 63445717 63445785 -37934736 + MLT1B LTR MaLR 31 99 -291 1293 198 158 5 chr15 63445827 63446206 -37934315 + MLT1C LTR MaLR 31 467 0 335 275 32 83 chr15 63446385 63446603 -37933918 + L2 LINE L2 3098 3304 -9 306 256 52 105 chr15 63446978 63447169 -37933352 - MIR SINE MIR -69 193 13 * 1102 236 9 0 chr15 63447114 63447334 -37933187 + MIR SINE MIR 20 241 -21 843 111 0 0 chr15 63448231 63448348 -37932173 + AluY SINE Alu 194 310 -1 1352 147 0 4 chr15 63448352 63448583 -37931938 - L1M3 LINE L1 -375 5808 5579 1096 281 27 14 chr15 63448593 63448982 -37931539 + L2 LINE L2 2699 3081 -232 2415 98 0 0 chr15 63448982 63449289 -37931232 - AluSg SINE Alu -3 307 1 1096 281 27 14 chr15 63449289 63449305 -37931216 + L2 LINE L2 3081 3095 -218 1444 167 80 17 chr15 63449305 63449592 -37930929 - AluJo SINE Alu -7 305 1 1096 281 27 14 chr15 63449592 63449644 -37930877 + L2 LINE L2 3095 3163 -150 788 247 9 50 chr15 63449666 63449720 -37930801 - MIR SINE MIR -21 241 186 2305 120 0 3 chr15 63449720 63450029 -37930492 - AluSx SINE Alu -4 308 1 788 247 9 50 chr15 63450029 63450193 -37930328 - MIR SINE MIR -76 186 32 415 0 0 35 chr15 63450193 63450250 -37930271 + (TTATA)n Simple_repeat Simple_repeat 2 56 0 644 204 54 42 chr15 63450283 63450450 -37930071 + L2 LINE L2 3145 3313 0 2109 137 7 0 chr15 63451072 63451475 -37929046 - AluSx SINE Alu 0 405 1 2037 116 32 26 chr15 63451623 63451933 -37928588 - AluSx SINE Alu 0 312 1 209 227 0 0 chr15 63453500 63453544 -37926977 + T-rich Low_complexity Low_complexity 1 44 0 460 367 46 17 chr15 63454144 63454381 -37926140 + MIR SINE MIR 13 256 -6 414 0 0 0 chr15 63454473 63454519 -37926002 + (CA)n Simple_repeat Simple_repeat 2 47 0 300 331 32 24 chr15 63454707 63454831 -37925690 + L2 LINE L2 3182 3306 -7 214 277 8 118 chr15 63454848 63454967 -37925554 + L2 LINE L2 3203 3308 -5 2452 75 0 10 chr15 63455462 63455768 -37924753 - AluSq SINE Alu -10 303 1 1542 177 71 17 chr15 63456115 63456409 -37924112 + AluJo SINE Alu 1 310 -2 1738 159 45 3 chr15 63456553 63456842 -37923679 - AluJb SINE Alu -11 301 1 336 267 148 51 chr15 63458334 63458510 -37922011 - L1ME4a LINE L1 -1 6120 5928 648 271 82 0 chr15 63458525 63458741 -37921780 - L1M1 LINE L1 -359 5762 5585 539 257 153 20 chr15 63458814 63459016 -37921505 + MIR SINE MIR 7 235 -27 2381 101 48 28 chr15 63459044 63459401 -37921120 - THE1B LTR MaLR 0 364 1 2406 84 0 3 chr15 63459502 63459800 -37920721 - AluSc SINE Alu -12 297 1 365 311 85 96 chr15 63459898 63460345 -37920176 + L2 LINE L2 2824 3265 -7 314 230 115 46 chr15 63460851 63460938 -37919583 + L2 LINE L2 3221 3313 0 505 354 47 71 chr15 63460995 63461334 -37919187 - L2 LINE L2 -10 3262 2932 488 275 50 0 chr15 63461350 63461470 -37919051 - L2 LINE L2 0 3313 3188 285 196 0 0 chr15 63461838 63461889 -37918632 + L2 LINE L2 3217 3267 -5 257 318 211 29 chr15 63462120 63462400 -37918121 - L2 LINE L2 0 3272 2942 2354 99 10 0 chr15 63462419 63462723 -37917798 + AluSp SINE Alu 1 307 -6 1759 146 3 54 chr15 63462894 63463188 -37917333 + AluJo SINE Alu 1 279 -33 282 56 0 0 chr15 63463202 63463238 -37917283 + (CA)n Simple_repeat Simple_repeat 2 37 0 222 105 0 0 chr15 63463246 63463284 -37917237 + (TA)n Simple_repeat Simple_repeat 1 38 0 625 264 115 0 chr15 63464786 63464968 -37915553 + MIR SINE MIR 1 203 -59 294 245 28 66 chr15 63465505 63465611 -37914910 - MIR3 SINE MIR -92 116 15 192 77 0 0 chr15 63465612 63465638 -37914883 + (T)n Simple_repeat Simple_repeat 1 26 0 525 251 180 0 chr15 63466370 63466553 -37913968 - MIR SINE MIR -2 260 45 335 307 39 16 chr15 63466580 63466707 -37913814 - MIR3 SINE MIR -21 187 58 294 143 48 0 chr15 63466715 63466778 -37913743 + MER96 DNA MER1_type? 5 70 -105 191 123 0 158 chr15 63467750 63467807 -37912714 + MIR SINE MIR 88 135 -73 261 318 6 46 chr15 63468070 63468243 -37912278 + GA-rich Low_complexity Low_complexity 3 168 0 279 279 16 25 chr15 63468331 63468453 -37912068 + GA-rich Low_complexity Low_complexity 3 123 0 186 103 0 0 chr15 63468484 63468513 -37912008 + (CTCG)n Simple_repeat Simple_repeat 2 30 0 23 86 0 0 chr15 63470000 63470058 -37910463 + GC_rich Low_complexity Low_complexity 1 58 0 372 261 97 30 chr15 63470438 63470572 -37909949 - MIR3 SINE MIR -60 148 6 2260 110 17 0 chr15 63471327 63471628 -37908893 - AluSx SINE Alu -6 306 1 543 230 0 0 chr15 63471700 63471813 -37908708 - L2 LINE L2 -10 3303 3191 842 150 100 56 chr15 63472377 63472557 -37907964 - MER5A DNA MER1_type -1 188 1 566 250 19 6 chr15 63473885 63474041 -37906480 - MLT1L LTR MaLR -21 594 437 484 248 22 36 chr15 63474118 63474255 -37906266 - MLT1L LTR MaLR -337 278 144 330 60 0 0 chr15 63474254 63474304 -37906217 - AluSp SINE Alu -3 300 251 * 1505 84 11 0 chr15 63474309 63474499 -37906022 - AluSp SINE Alu -121 192 1 985 169 13 0 chr15 63474505 63474659 -37905862 - FRAM SINE Alu -10 156 1 186 167 48 0 chr15 63474812 63474854 -37905667 + MIR SINE MIR 104 147 -115 196 71 0 0 chr15 63475090 63475118 -37905403 - L2 LINE L2 -217 3055 3028 1700 157 3 34 chr15 63475438 63475732 -37904789 - AluJo SINE Alu -26 286 2 311 330 48 37 chr15 63475758 63475946 -37904575 + L2 LINE L2 2310 2499 -815 25 0 0 0 chr15 63475964 63475989 -37904532 + AT_rich Low_complexity Low_complexity 1 25 0 1942 136 14 3 chr15 63475989 63476276 -37904245 - AluSx SINE Alu -22 290 1 1699 173 10 17 chr15 63476609 63476909 -37903612 - AluJo SINE Alu -14 298 1 252 255 121 50 chr15 63477290 63477431 -37903090 + L2 LINE L2 3163 3313 0 344 361 58 7 chr15 63477505 63477728 -37902793 - MIR SINE MIR -7 255 21 231 305 212 0 chr15 63478118 63478236 -37902285 - MIR SINE MIR -37 225 83 300 316 34 8 chr15 63479038 63479155 -37901366 - MIR3 SINE MIR -29 179 60 189 356 34 17 chr15 63479603 63479721 -37900800 + MIR3 SINE MIR 45 164 -44 380 54 0 18 chr15 63479729 63479785 -37900736 + (TCCC)n Simple_repeat Simple_repeat 3 57 0 1936 178 3 10 chr15 63479817 63480131 -37900390 - AluJb SINE Alu 0 312 1 630 262 23 75 chr15 63481499 63481713 -37898808 + MIR SINE MIR 49 251 -11 212 238 0 0 chr15 63482175 63482217 -37898304 + GA-rich Low_complexity Low_complexity 6 47 0 455 175 12 0 chr15 63483140 63483220 -37897301 + MIR SINE MIR 32 112 -150 * 910 278 35 43 chr15 63483217 63483562 -37896959 - L2 LINE L2 -1 3312 2971 578 224 16 8 chr15 63483570 63483695 -37896826 + MIR SINE MIR 116 241 -21 441 264 32 8 chr15 63484575 63484700 -37895821 - MIR SINE MIR -51 211 84 667 313 109 35 chr15 63485818 63486375 -37894146 + L2 LINE L2 2652 3261 -11 1805 186 3 3 chr15 63486739 63487035 -37893486 - AluJo SINE Alu -16 296 1 188 326 163 0 chr15 63487121 63487213 -37893308 + L3b LINE CR1 1342 1448 -135 829 242 41 84 chr15 63487912 63488057 -37892464 - MLT1L LTR MaLR -130 485 335 1616 103 194 0 chr15 63488057 63488310 -37892211 + AluSx SINE Alu 1 302 0 829 242 41 84 chr15 63488310 63488532 -37891989 - MLT1L LTR MaLR -280 335 134 353 225 0 45 chr15 63488630 63488719 -37891802 + MIR SINE MIR 76 160 -102 2111 139 0 0 chr15 63488722 63489016 -37891505 + AluSx SINE Alu 1 294 -18 747 80 0 0 chr15 63489142 63489242 -37891279 - AluY SINE Alu -217 101 2 2019 97 42 76 chr15 63489243 63489277 -37891244 + L1MB2 LINE L1 5795 5829 -342 2306 110 0 7 chr15 63489277 63489587 -37890934 + AluSx SINE Alu 2 309 -3 2019 97 42 76 chr15 63489587 63489875 -37890646 + L1MB2 LINE L1 5829 6125 -46 1729 144 99 0 chr15 63489875 63490159 -37890362 + AluSx SINE Alu 1 312 0 2019 97 42 76 chr15 63490159 63490171 -37890350 + L1MB2 LINE L1 6125 6136 -35 1044 217 0 0 chr15 63490171 63490346 -37890175 + FAM SINE Alu 1 175 0 2019 97 42 76 chr15 63490346 63490392 -37890129 + L1MB2 LINE L1 6136 6164 -7 675 207 117 84 chr15 63490452 63490841 -37889680 - MLT1H1 LTR MaLR 0 555 79 817 279 20 0 chr15 63490908 63491112 -37889409 - L2 LINE L2 -685 2629 2422 258 339 85 42 chr15 63491148 63491313 -37889208 + MIR SINE MIR 20 191 -71 366 292 35 63 chr15 63491357 63491542 -37888979 + MIR3 SINE MIR 8 187 -63 2098 129 3 10 chr15 63492008 63492142 -37888379 + AluJb SINE Alu 1 134 -178 2451 94 0 0 chr15 63492142 63492450 -37888071 + AluSg SINE Alu 1 308 -2 2098 129 3 10 chr15 63492450 63492618 -37887903 + AluJb SINE Alu 134 301 -11 21 0 0 0 chr15 63493070 63493091 -37887430 + AT_rich Low_complexity Low_complexity 1 21 0 899 147 7 0 chr15 63494074 63494210 -37886311 + AluJb SINE Alu 110 246 -66 234 91 0 0 chr15 63494372 63494405 -37886116 + (CTG)n Simple_repeat Simple_repeat 3 35 0 230 265 0 0 chr15 63495042 63495091 -37885430 + L2 LINE L2 3255 3303 -10 369 231 105 120 chr15 63495776 63496110 -37884411 - MER102a DNA MER1_type -1 329 1 1857 139 10 3 chr15 63496505 63496815 -37883706 - AluSx SINE Alu 0 312 1 1071 234 138 47 chr15 63496886 63497314 -37883207 + MLT1C LTR MaLR 1 467 0 361 325 107 12 chr15 63497464 63497633 -37882888 - L1MC4a LINE L1 -1832 5976 5792 905 223 229 16 chr15 63497777 63498096 -37882425 + MLT1I LTR MaLR 19 405 -4 200 100 25 0 chr15 63498114 63498154 -37882367 + (TA)n Simple_repeat Simple_repeat 2 42 0 1148 158 0 15 chr15 63498243 63498445 -37882076 - AluJb SINE Alu -1 311 113 2128 113 0 10 chr15 63498450 63498759 -37881762 - AluSq SINE Alu -5 308 3 1930 152 10 0 chr15 63500017 63500319 -37880202 - AluSx SINE Alu -7 305 1 2252 189 114 58 chr15 63500422 63500937 -37879584 + MLT1E3 LTR MaLR 3 557 -67 1547 171 9 40 chr15 63500937 63501259 -37879262 + AluJb SINE Alu 1 312 0 2252 189 114 58 chr15 63501259 63501332 -37879189 + MLT1E3 LTR MaLR 557 624 0 25 0 0 0 chr15 63501457 63501482 -37879039 + AT_rich Low_complexity Low_complexity 1 25 0 1529 175 8 0 chr15 63501483 63501734 -37878787 + AluSx SINE Alu 1 253 -59 2376 38 3 3 chr15 63501927 63502219 -37878302 + AluY SINE Alu 1 292 -19 223 74 0 0 chr15 63502625 63502652 -37877869 + (A)n Simple_repeat Simple_repeat 1 27 0 200 268 0 0 chr15 63503302 63503343 -37877178 + MIR SINE MIR 28 68 -194 720 129 9 17 chr15 63503343 63503459 -37877062 + AluJo SINE Alu 22 136 -176 274 23 23 23 chr15 63503459 63503503 -37877018 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 342 297 189 11 chr15 63503504 63503679 -37876842 + MIR SINE MIR 57 262 0 1200 135 0 0 chr15 63504443 63504621 -37875900 + AluSg/x SINE Alu 133 310 0 1269 216 90 43 chr15 63504769 63504802 -37875719 - MLT1J1 LTR MaLR -69 381 351 1973 110 34 3 chr15 63504802 63505094 -37875427 + AluSx SINE Alu 1 301 -11 1269 216 90 43 chr15 63505094 63505433 -37875088 - MLT1J1 LTR MaLR -99 351 1 637 282 158 55 chr15 63505680 63505983 -37874538 + MLT1I LTR MaLR 4 351 -58 2408 73 0 0 chr15 63505983 63506285 -37874236 - AluSp SINE Alu -11 302 1 637 282 158 55 chr15 63506285 63506343 -37874178 + MLT1I LTR MaLR 351 402 -7 279 0 0 0 chr15 63506394 63506425 -37874096 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 462 306 94 0 chr15 63507224 63507384 -37873137 + MIR SINE MIR 37 211 -51 1326 126 148 72 chr15 63507497 63507774 -37872747 + AluJo SINE Alu 1 298 -4 518 133 104 118 chr15 63507991 63508126 -37872395 + FLAM_C SINE Alu 1 133 0 188 75 0 75 chr15 63508778 63508818 -37871703 + (CGGGGG)n Simple_repeat Simple_repeat 4 40 0 2209 91 0 23 chr15 63511552 63511861 -37868660 - AluSg SINE Alu -8 302 1 756 156 25 8 chr15 63512352 63512474 -37868047 + FLAM_C SINE Alu 2 125 -18 816 96 16 0 chr15 63512483 63512608 -37867913 - L1MA8 LINE L1 -20 6271 6145 1863 156 3 0 chr15 63512937 63513245 -37867276 + AluSq SINE Alu 1 309 -4 248 343 15 0 chr15 63513249 63513316 -37867205 - L3 LINE CR1 -2 1575 1508 421 303 109 41 chr15 63513850 63514216 -37866305 - L2 LINE L2 -5 3267 2877 336 305 92 37 chr15 63514238 63514309 -37866212 - L2 LINE L2 -558 2756 2690 1917 120 7 10 chr15 63514309 63514601 -37865920 + AluSq SINE Alu 9 299 -14 336 305 92 37 chr15 63514601 63514693 -37865828 - L2 LINE L2 -624 2690 2584 2706 150 18 55 chr15 63514750 63514813 -37865708 + L1MB7 LINE L1 5636 5700 -484 1790 137 23 7 chr15 63514813 63515120 -37865401 + AluSx SINE Alu 1 312 0 2706 150 18 55 chr15 63515120 63515621 -37864900 + L1MB7 LINE L1 5700 6179 -5 1938 135 0 0 chr15 63516311 63516620 -37863901 - AluSx SINE Alu 0 309 1 1589 162 30 17 chr15 63517134 63517431 -37863090 + AluJo SINE Alu 7 307 -5 278 175 79 0 chr15 63517701 63517764 -37862757 + L2 LINE L2 2993 3060 -212 2854 151 80 7 chr15 63517848 63518397 -37862124 - L1MB3 LINE L1 -2 6181 5593 2407 69 3 0 chr15 63518849 63519155 -37861366 + AluY SINE Alu 1 307 -4 2077 112 0 7 chr15 63519210 63519497 -37861024 + AluJo SINE Alu 3 287 -25 1192 84 0 0 chr15 63519658 63519812 -37860709 + AluSq SINE Alu 1 154 -159 1374 89 0 0 chr15 63519913 63520092 -37860429 - AluSq SINE Alu -134 179 1 472 161 12 0 chr15 63520161 63520242 -37860279 + FLAM SINE Alu 52 133 -10 26 0 0 0 chr15 63520242 63520268 -37860253 + AT_rich Low_complexity Low_complexity 1 26 0 449 179 0 0 chr15 63520281 63520365 -37860156 + AluJ/FRAM SINE Alu 225 308 -4 1953 134 3 0 chr15 63520444 63520736 -37859785 + AluSx SINE Alu 1 293 -19 2384 87 0 0 chr15 63521003 63521313 -37859208 + AluY SINE Alu 1 310 -1 1667 127 0 4 chr15 63521321 63521566 -37858955 + AluSg SINE Alu 1 244 -66 2036 113 14 0 chr15 63521792 63522085 -37858436 - AluSx SINE Alu -15 297 1 2402 44 20 0 chr15 63523365 63523659 -37856862 + AluY SINE Alu 1 300 -11 452 299 98 12 chr15 63523961 63524125 -37856396 - MIR3 SINE MIR -10 198 21 1638 173 6 35 chr15 63524462 63524775 -37855746 - AluJo SINE Alu -8 304 1 244 238 19 95 chr15 63524828 63524881 -37855640 + L1ME LINE L1 5631 5674 -447 2058 123 3 0 chr15 63524881 63525183 -37855338 + AluSg SINE Alu 1 303 -7 244 238 19 95 chr15 63525183 63525234 -37855287 + L1ME LINE L1 5674 5727 -394 2218 94 7 0 chr15 63525495 63525794 -37854727 - AluSg SINE Alu -7 303 3 983 148 0 44 chr15 63525795 63525977 -37854544 - AluSg/x SINE Alu -5 305 132 2103 102 3 13 chr15 63525977 63526146 -37854375 - AluSg SINE Alu -9 301 135 2049 118 10 0 chr15 63526146 63526434 -37854087 - AluSg SINE Alu -19 291 1 2103 102 3 13 chr15 63526434 63526568 -37853953 - AluSg SINE Alu -175 135 1 323 376 12 40 chr15 63526572 63526819 -37853702 - L1M4 LINE L1 -868 5278 5039 1366 184 3 84 chr15 63526854 63527186 -37853335 - AluJo SINE Alu -1 311 7 813 177 0 0 chr15 63527192 63527322 -37853199 - FLAM_C SINE Alu -3 130 1 2101 111 0 0 chr15 63528426 63528724 -37851797 + AluSx SINE Alu 1 298 -14 485 272 89 5 chr15 63528813 63529004 -37851517 - L1ME LINE L1 -318 5803 5597 2043 118 0 7 chr15 63529047 63529352 -37851169 + AluSx SINE Alu 1 303 -9 516 262 89 5 chr15 63529441 63529632 -37850889 - L1ME LINE L1 -318 5803 5597 2127 89 10 3 chr15 63529675 63529967 -37850554 + AluSq SINE Alu 1 294 -19 426 275 190 10 chr15 63530012 63530212 -37850309 - MIR SINE MIR -7 255 20 1511 139 34 34 chr15 63530310 63530577 -37849944 - AluJb SINE Alu -45 267 1 356 151 55 14 chr15 63530626 63530699 -37849822 + MER116 DNA Mariner 2 77 -3 2006 114 7 3 chr15 63531160 63531449 -37849072 - AluSx SINE Alu -14 298 9 1035 222 39 21 chr15 63531589 63531868 -37848653 + L1MA9 LINE L1 5991 6274 -38 2372 46 0 3 chr15 63531871 63532190 -37848331 - AluY SINE Alu 0 318 1 1565 101 5 0 chr15 63532192 63532410 -37848111 - AluSg/x SINE Alu -16 296 78 700 322 233 13 chr15 63532512 63533476 -37847045 - L2 LINE L2 -64 3249 2044 1096 101 30 24 chr15 63533476 63533644 -37846877 - AluSg SINE Alu -124 186 18 259 355 32 0 chr15 63533644 63533768 -37846753 - L2 LINE L2 -1288 2026 1899 254 56 0 0 chr15 63533830 63533866 -37846655 - L1MA3 LINE L1 0 6305 6270 2329 61 3 0 chr15 63533872 63534169 -37846352 - AluY SINE Alu -13 298 1 202 370 48 34 chr15 63534254 63534400 -37846121 - MIR3 SINE MIR -39 169 22 1175 73 0 7 chr15 63534724 63534874 -37845647 + AluSg SINE Alu 1 149 -161 1739 129 36 4 chr15 63534915 63535195 -37845326 + AluJo SINE Alu 1 289 -23 2256 84 0 10 chr15 63535566 63535874 -37844647 + AluY SINE Alu 1 305 -6 453 292 29 15 chr15 63536260 63536397 -37844124 + L2 LINE L2 3175 3313 0 784 94 0 34 chr15 63536546 63536663 -37843858 - AluY SINE Alu -5 306 194 742 117 48 8 chr15 63536795 63536918 -37843603 + MSTB LTR MaLR 1 137 -291 2245 94 0 3 chr15 63536918 63537225 -37843296 - AluY SINE Alu -4 307 2 742 117 48 8 chr15 63537225 63537248 -37843273 + MSTB LTR MaLR 137 158 -270 2146 59 4 0 chr15 63537294 63537565 -37842956 - AluY SINE Alu -39 272 1 1112 44 7 0 chr15 63537565 63537700 -37842821 - AluSq/x SINE Alu -177 136 1 810 181 0 0 chr15 63537702 63537829 -37842692 - AluJo/FLAM SINE Alu -183 129 3 1825 146 10 0 chr15 63538177 63538486 -37842035 - AluSx SINE Alu 0 312 1 2211 96 3 3 chr15 63538601 63538904 -37841617 - AluSq SINE Alu -9 304 2 1525 150 106 0 chr15 63538927 63539201 -37841320 - AluSx SINE Alu -9 303 1 23 0 0 0 chr15 63539347 63539370 -37841151 + AT_rich Low_complexity Low_complexity 1 23 0 742 102 0 0 chr15 63539376 63539474 -37841047 + AluY SINE Alu 5 102 -209 1296 146 73 4 chr15 63539575 63539808 -37840713 - AluJo SINE Alu -63 249 1 1231 115 4 44 chr15 63539842 63540068 -37840453 + AluSg/x SINE Alu 91 307 -3 21 0 0 0 chr15 63540969 63540990 -37839531 + GC_rich Low_complexity Low_complexity 1 21 0 704 129 105 32 chr15 63542286 63542410 -37838111 - FLAM_C SINE Alu 0 133 1 2249 91 3 0 chr15 63542637 63542945 -37837576 - AluSp SINE Alu -4 309 1 543 228 37 88 chr15 63543243 63543312 -37837209 + MIR SINE MIR 3 74 -188 1914 108 18 0 chr15 63543312 63543589 -37836932 - AluSg SINE Alu -6 304 23 543 228 37 88 chr15 63543589 63543734 -37836787 + MIR SINE MIR 74 206 -56 228 200 146 0 chr15 63544337 63544392 -37836129 - MER69 DNA AcHobo -2379 147 85 474 297 98 60 chr15 63544409 63544797 -37835724 + L2 LINE L2 2707 3079 -234 716 188 0 8 chr15 63544797 63544930 -37835591 - FLAM_A SINE Alu -1 132 1 474 297 98 60 chr15 63544930 63545034 -37835487 + L2 LINE L2 3079 3178 -135 2121 72 58 0 chr15 63545034 63545311 -37835210 - AluY SINE Alu -18 293 1 474 297 98 60 chr15 63545311 63545404 -37835117 + L2 LINE L2 3178 3313 0 257 200 67 0 chr15 63545667 63545727 -37834794 - MLT1I LTR MaLR -6 403 340 490 288 137 19 chr15 63545768 63545980 -37834541 - MLT1I LTR MaLR -147 262 26 364 164 0 0 chr15 63545999 63546060 -37834461 - AluSp/q SINE Alu 0 303 243 944 145 7 7 chr15 63546060 63546212 -37834309 - AluJb SINE Alu -154 158 7 2340 90 3 0 chr15 63546280 63546592 -37833929 - AluSp SINE Alu 0 313 1 299 290 41 58 chr15 63546592 63546874 -37833647 - L1ME3A LINE L1 -280 5890 5612 2017 128 16 13 chr15 63546910 63547214 -37833307 - AluSg SINE Alu -5 305 1 266 269 0 13 chr15 63547283 63547368 -37833153 + MIR SINE MIR 73 147 -61 1134 285 93 14 chr15 63547371 63547859 -37832662 + L2 LINE L2 2777 3311 -2 1650 175 48 3 chr15 63548199 63548491 -37832030 - AluJo SINE Alu -7 305 1 504 119 0 71 chr15 63548823 63548907 -37831614 - Tigger7 DNA MER2_type 0 2587 2510 1590 201 7 3 chr15 63549014 63549313 -37831208 - AluJb SINE Alu -12 300 1 250 146 0 0 chr15 63549905 63549946 -37830575 + AluJo SINE Alu 1 41 -262 1358 180 4 4 chr15 63549947 63550191 -37830330 - AluJo SINE Alu -12 300 57 2154 89 0 76 chr15 63550204 63550520 -37830001 - AluSg SINE Alu -18 292 1 572 106 138 0 chr15 63550536 63550630 -37829891 - HY1 scRNA scRNA -1 111 5 1300 195 35 28 chr15 63550630 63550912 -37829609 + AluJo SINE Alu 27 310 -2 2095 128 0 7 chr15 63551026 63551322 -37829199 + AluSx SINE Alu 1 294 -18 2492 48 7 14 chr15 63551815 63552109 -37828412 + AluY SINE Alu 1 292 -19 23 33 0 0 chr15 63552632 63552662 -37827859 + AT_rich Low_complexity Low_complexity 1 30 0 2362 94 0 3 chr15 63552662 63552959 -37827562 + AluSq SINE Alu 1 296 -17 2200 94 13 27 chr15 63553187 63553485 -37827036 - AluSx SINE Alu -18 294 1 683 180 33 0 chr15 63553491 63553613 -37826908 - FLAM_C SINE Alu -16 127 2 414 319 73 26 chr15 63553618 63553891 -37826630 + L2 LINE L2 2894 3179 -134 453 268 173 20 chr15 63553892 63554020 -37826501 - Charlie7 DNA MER1_type -1157 1455 1348 1517 181 9 59 chr15 63554020 63554341 -37826180 - AluJo SINE Alu -7 305 1 453 268 173 20 chr15 63554341 63554466 -37826055 - Charlie7 DNA MER1_type -1264 1348 1163 673 187 0 43 chr15 63554471 63554610 -37825911 - FLAM_C SINE Alu 0 133 1 939 148 0 27 chr15 63554665 63554814 -37825707 + FRAM SINE Alu 19 163 -13 1884 229 209 28 chr15 63554814 63554901 -37825620 - Charlie7 DNA MER1_type -1440 1172 1102 2258 96 3 0 chr15 63554901 63555193 -37825328 - AluSq SINE Alu -20 293 1 1884 229 209 28 chr15 63555193 63556074 -37824447 - Charlie7 DNA MER1_type -1510 1102 28 2087 130 14 0 chr15 63556246 63556539 -37823982 + AluSx SINE Alu 1 297 -15 2425 66 0 13 chr15 63556832 63557134 -37823387 - AluY SINE Alu -13 298 1 1636 183 0 0 chr15 63557145 63557407 -37823114 - AluJo SINE Alu -45 267 6 2070 195 121 40 chr15 63557414 63557862 -37822659 - L1ME3A LINE L1 -4 6166 5755 1725 176 43 43 chr15 63557862 63557941 -37822580 + MER7A DNA MER2_type 2 80 -2958 2189 112 3 0 chr15 63557941 63558236 -37822285 + AluSg SINE Alu 1 296 -14 1725 176 43 43 chr15 63558236 63558503 -37822018 + MER7A DNA MER2_type 79 346 0 2070 195 121 40 chr15 63558503 63558529 -37821992 - L1ME3A LINE L1 -415 5755 5733 2668 51 0 0 chr15 63558529 63558840 -37821681 + AluY SINE Alu 1 311 0 2070 195 121 40 chr15 63558840 63559010 -37821511 - L1ME3A LINE L1 -437 5733 5469 1763 178 0 17 chr15 63559027 63559320 -37821201 - AluJo SINE Alu -24 288 1 227 133 0 0 chr15 63559370 63559415 -37821106 - L1MB3 LINE L1 -1 6182 6138 657 168 0 18 chr15 63559418 63559531 -37820990 - FLAM_A SINE Alu -10 132 22 690 168 30 109 chr15 63559560 63559734 -37820787 - L1MB4 LINE L1 -42 6138 5952 1666 123 83 22 chr15 63559734 63559881 -37820640 - AluSx SINE Alu -18 294 157 2083 119 0 22 chr15 63559881 63560200 -37820321 - AluSq SINE Alu -1 312 1 1666 123 83 22 chr15 63560200 63560329 -37820192 - AluSx SINE Alu -155 157 1 690 168 30 109 chr15 63560329 63560416 -37820105 - L1MB4 LINE L1 -228 5952 5254 1024 200 0 0 chr15 63560451 63560616 -37819905 + FAM SINE Alu 1 165 -10 868 135 0 8 chr15 63560660 63560793 -37819728 - FLAM_C SINE Alu -1 132 1 261 0 0 0 chr15 63560818 63560847 -37819674 + (TA)n Simple_repeat Simple_repeat 2 30 0 2435 70 10 19 chr15 63561013 63561326 -37819195 - AluSg SINE Alu 0 310 1 2926 10 0 0 chr15 63561432 63561743 -37818778 - AluYa5 SINE Alu 0 311 1 2084 133 7 3 chr15 63562333 63562627 -37817894 + AluSx SINE Alu 1 295 -17 2310 108 3 0 chr15 63562753 63563058 -37817463 + AluSq SINE Alu 1 306 -7 2328 84 0 14 chr15 63563058 63563355 -37817166 + AluSg SINE Alu 1 293 -17 22 0 0 0 chr15 63563468 63563490 -37817031 + AT_rich Low_complexity Low_complexity 1 22 0 665 260 13 0 chr15 63563493 63563643 -37816878 - FRAM SINE Alu -14 152 1 297 254 14 48 chr15 63563803 63563910 -37816611 + AluJ/FLAM SINE Alu 1 86 -216 253 265 20 31 chr15 63563865 63563963 -37816558 - AluY SINE Alu -202 99 3 * 363 137 0 0 chr15 63564936 63564987 -37815534 - MER66A LTR ERV1 -140 338 288 221 0 35 0 chr15 63565000 63565029 -37815492 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2245 97 0 0 chr15 63565031 63565310 -37815211 - AluSx SINE Alu -33 279 1 207 0 0 0 chr15 63565905 63565928 -37814593 + (TG)n Simple_repeat Simple_repeat 2 24 0 1281 177 13 17 chr15 63565929 63566166 -37814355 - AluJo SINE Alu -37 275 40 2482 63 0 20 chr15 63566323 63566625 -37813896 + AluY SINE Alu 4 299 -12 2103 117 3 3 chr15 63566908 63567199 -37813322 - AluSc SINE Alu -18 291 1 1123 75 0 0 chr15 63567199 63567332 -37813189 - AluSg1 SINE Alu -176 133 1 2500 66 3 0 chr15 63567828 63568133 -37812388 - AluY SINE Alu -5 306 1 270 0 0 0 chr15 63569066 63569096 -37811425 + (CA)n Simple_repeat Simple_repeat 2 31 0 2498 64 10 0 chr15 63569108 63569404 -37811117 - AluSx SINE Alu -13 299 1 23 0 0 0 chr15 63569467 63569490 -37811031 + AT_rich Low_complexity Low_complexity 1 23 0 2456 74 0 7 chr15 63570010 63570308 -37810213 - AluY SINE Alu -15 296 1 521 233 13 53 chr15 63570342 63570409 -37810112 + L1ME LINE L1 5529 5597 -524 2196 120 0 0 chr15 63570409 63570709 -37809812 - AluSx SINE Alu -12 300 1 521 233 13 53 chr15 63570709 63570791 -37809730 + L1ME LINE L1 5597 5672 -449 842 156 47 80 chr15 63570839 63571051 -37809470 + MER3 DNA MER1_type 1 205 -4 2291 90 17 0 chr15 63571274 63571562 -37808959 - AluY SINE Alu -18 293 1 1868 107 0 4 chr15 63571657 63571900 -37808621 - AluSx SINE Alu -17 295 54 891 136 0 0 chr15 63573050 63573175 -37807346 - FLAM_C SINE Alu -18 125 1 331 318 108 6 chr15 63573356 63573532 -37806989 + MIR SINE MIR 40 233 -29 1630 134 40 0 chr15 63573556 63573803 -37806718 - AluSx SINE Alu -55 257 1 2162 82 48 0 chr15 63573814 63574107 -37806414 - AluY SINE Alu 0 306 1 2294 115 0 0 chr15 63574355 63574651 -37805870 + AluSg SINE Alu 1 296 -14 2141 120 0 17 chr15 63574707 63575006 -37805515 + AluSx SINE Alu 7 300 -12 880 188 51 6 chr15 63575799 63575975 -37804546 - AluJb SINE Alu -8 304 121 21 0 0 0 chr15 63576068 63576089 -37804432 + AT_rich Low_complexity Low_complexity 1 21 0 1991 134 3 3 chr15 63576178 63576470 -37804051 - AluSx SINE Alu -20 292 1 1240 252 69 23 chr15 63576698 63577087 -37803434 + L1MC4a LINE L1 5254 5660 -2148 847 128 32 0 chr15 63577111 63577236 -37803285 + AluJb SINE Alu 3 131 -181 396 191 0 12 chr15 63577252 63577336 -37803185 + L1MC4a LINE L1 5674 5756 -2052 289 198 20 89 chr15 63577346 63577447 -37803074 + L1MC4a LINE L1 5839 5932 -1876 363 300 0 17 chr15 63579028 63579148 -37801373 - L2 LINE L2 -1 3271 3154 605 296 75 39 chr15 63579602 63579801 -37800720 + L1ME4a LINE L1 5513 5703 -418 2295 84 7 13 chr15 63579801 63580100 -37800421 - AluSg SINE Alu -13 297 1 605 296 75 39 chr15 63580100 63580288 -37800233 + L1ME4a LINE L1 5703 5914 -207 1949 142 0 30 chr15 63581433 63581749 -37798772 - AluSx SINE Alu 0 307 1 842 166 0 14 chr15 63582344 63582489 -37798032 + FLAM_C SINE Alu 1 143 0 2255 120 3 0 chr15 63582492 63582800 -37797721 + AluSg SINE Alu 1 309 -1 2136 132 3 0 chr15 63583308 63583612 -37796909 + AluSx SINE Alu 1 305 -7 823 222 80 0 chr15 63583724 63583886 -37796635 - FAM SINE Alu 0 175 1 198 103 0 0 chr15 63584207 63584236 -37796285 + (T)n Simple_repeat Simple_repeat 1 29 0 1929 263 157 35 chr15 63584239 63584743 -37795778 - L2 LINE L2 -13 3300 2859 2273 115 3 0 chr15 63584743 63585048 -37795473 - AluSx SINE Alu -6 306 1 1929 263 157 35 chr15 63585048 63586005 -37794516 - L2 LINE L2 -454 2859 1611 914 123 109 32 chr15 63586029 63586238 -37794283 + L1MA8 LINE L1 6067 6302 -10 29 0 0 0 chr15 63586251 63586280 -37794241 + AT_rich Low_complexity Low_complexity 1 29 0 436 200 11 11 chr15 63587177 63587267 -37793254 + MIR SINE MIR 37 126 -136 367 240 0 26 chr15 63587678 63587832 -37792689 + (CATATA)n Simple_repeat Simple_repeat 3 152 0 1986 134 14 3 chr15 63587833 63588123 -37792398 - AluSg SINE Alu -11 299 7 2436 95 0 0 chr15 63588288 63588592 -37791929 + AluSc SINE Alu 1 304 -5 25 0 0 0 chr15 63588592 63588617 -37791904 + AT_rich Low_complexity Low_complexity 1 25 0 812 152 51 14 chr15 63588781 63588919 -37791602 + L1MD2 LINE L1 6059 6201 -158 1943 142 20 10 chr15 63589350 63589653 -37790868 - AluJb SINE Alu -6 306 1 1705 150 8 8 chr15 63590210 63590477 -37790044 - AluJb SINE Alu -22 290 24 478 120 0 33 chr15 63590501 63590593 -37789928 - AluJ/FRAM SINE Alu 0 312 224 828 185 13 6 chr15 63590593 63590750 -37789771 - AluJb SINE Alu -37 275 118 880 220 96 0 chr15 63591853 63592062 -37788459 + MIR SINE MIR 2 230 -32 345 141 113 0 chr15 63592081 63592152 -37788369 - MER116 DNA Mariner 0 80 2 1649 173 7 30 chr15 63592324 63592619 -37787902 - AluJb SINE Alu -24 288 1 265 286 11 33 chr15 63592979 63593070 -37787451 - L2 LINE L2 0 3313 3225 1774 148 48 0 chr15 63593410 63593681 -37786840 - AluJo SINE Alu -28 284 1 1917 153 3 31 chr15 63593980 63594301 -37786220 + AluJo SINE Alu 1 312 0 1374 161 66 4 chr15 63595351 63595593 -37784928 + AluJo SINE Alu 45 301 -11 1957 147 0 22 chr15 63595752 63596065 -37784456 + AluJo SINE Alu 2 307 -5 2383 67 7 3 chr15 63596284 63596584 -37783937 + AluY SINE Alu 1 301 -10 792 183 15 66 chr15 63596758 63596955 -37783566 - AluJo SINE Alu -2 310 124 1455 160 69 21 chr15 63597158 63597272 -37783249 + AluJb SINE Alu 2 109 -203 207 0 0 0 chr15 63597272 63597295 -37783226 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1455 160 69 21 chr15 63597295 63597468 -37783053 + AluJb SINE Alu 109 303 -9 199 301 87 10 chr15 63597974 63598077 -37782444 + L2 LINE L2 3161 3271 -1 1806 78 0 12 chr15 63598617 63598862 -37781659 - AluSg SINE Alu -16 294 53 2241 91 0 3 chr15 63598966 63599262 -37781259 + AluSx SINE Alu 1 295 -17 1963 118 4 0 chr15 63599691 63599970 -37780551 + AluSx SINE Alu 1 280 -32 282 56 0 0 chr15 63599971 63600007 -37780514 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 1768 143 49 0 chr15 63600013 63600300 -37780221 + AluJb SINE Alu 1 301 -11 808 158 222 54 chr15 63600551 63600635 -37779886 - MER58 DNA MER1_type -104 237 168 1935 131 3 7 chr15 63600635 63600940 -37779581 + AluSx SINE Alu 1 304 -8 808 158 222 54 chr15 63600940 63601058 -37779463 - MER58 DNA MER1_type -173 168 1 850 273 98 69 chr15 63601150 63601703 -37778818 + MLT1K LTR MaLR 18 586 -2 236 333 50 57 chr15 63601807 63601948 -37778573 + L2 LINE L2 3129 3268 -4 257 315 45 0 chr15 63602645 63602734 -37777787 + L2 LINE L2 2961 3053 -219 2062 124 0 3 chr15 63603442 63603740 -37776781 - AluSx SINE Alu -15 297 1 2173 99 7 0 chr15 63603748 63604042 -37776479 - AluSc SINE Alu -13 296 1 1325 211 4 14 chr15 63604255 63604530 -37775991 + AluJb SINE Alu 1 272 -40 203 204 0 20 chr15 63604540 63604589 -37775932 + (CATA)n Simple_repeat Simple_repeat 1 48 0 2044 99 7 7 chr15 63605093 63605386 -37775135 - AluSq SINE Alu -10 303 11 525 183 0 87 chr15 63605461 63605587 -37774934 - MER58B DNA MER1_type -4 337 223 1876 130 23 10 chr15 63605712 63606012 -37774509 + AluSx SINE Alu 2 305 -7 356 216 84 2 chr15 63606484 63606583 -37773938 + MIR3 SINE MIR 66 171 -37 187 288 14 41 chr15 63606645 63606718 -37773803 - MIR SINE MIR -75 187 117 689 260 69 3 chr15 63606844 63607132 -37773389 - L1MCc LINE L1 -4958 1983 1677 622 195 0 84 chr15 63607138 63607292 -37773229 - FLAM_C SINE Alu -1 142 2 2201 213 77 80 chr15 63607297 63607624 -37772897 - L1MCc LINE L1 -4888 1535 1209 1880 133 6 56 chr15 63607624 63607797 -37772724 - AluSq SINE Alu -5 308 157 2292 84 3 0 chr15 63607797 63608095 -37772426 - AluSp SINE Alu -10 303 5 1880 133 6 56 chr15 63608095 63608245 -37772276 - AluSq SINE Alu -156 157 1 2201 213 77 80 chr15 63608245 63608257 -37772264 - L1MCc LINE L1 -5214 1209 1198 1985 140 0 0 chr15 63608257 63608550 -37771971 - AluSq SINE Alu -20 293 1 2201 213 77 80 chr15 63608550 63608984 -37771537 - L1MCc LINE L1 -5225 1198 909 2207 99 7 0 chr15 63608984 63609288 -37771233 - AluSp SINE Alu -7 306 1 2201 213 77 80 chr15 63609288 63609469 -37771052 - L1MCc LINE L1 -5514 909 729 186 43 0 0 chr15 63610328 63610351 -37770170 + (T)n Simple_repeat Simple_repeat 1 23 0 477 71 0 29 chr15 63610351 63610421 -37770100 - MER41B LTR ERV1 -88 547 480 318 244 290 0 chr15 63610906 63611037 -37769484 + MIR3 SINE MIR 34 202 -6 2278 75 3 0 chr15 63611470 63611762 -37768759 + AluY SINE Alu 1 293 -18 566 295 68 60 chr15 63611766 63611926 -37768595 - MIR SINE MIR 0 262 98 2007 130 0 0 chr15 63611926 63612219 -37768302 + AluSg SINE Alu 1 293 -17 566 295 68 60 chr15 63612219 63612292 -37768229 - MIR SINE MIR -164 98 27 458 198 30 0 chr15 63612313 63612414 -37768107 - L1ME3A LINE L1 -48 6122 6019 1790 180 75 28 chr15 63612424 63612459 -37768062 - MLT2D LTR ERVL -8 406 374 516 32 0 0 chr15 63612459 63612521 -37768000 + (TG)n Simple_repeat Simple_repeat 1 62 0 1790 180 75 28 chr15 63612521 63612873 -37767648 - MLT2D LTR ERVL -40 374 1 448 176 13 145 chr15 63612875 63612966 -37767555 - L1ME3A LINE L1 -157 6013 5912 1944 147 7 0 chr15 63612966 63613272 -37767249 - AluJb SINE Alu -4 308 1 448 176 13 145 chr15 63613272 63613301 -37767220 - L1ME3A LINE L1 -258 5912 5915 1847 138 72 36 chr15 63613301 63613663 -37766858 - THE1C LTR MaLR 0 375 1 448 176 13 145 chr15 63613663 63613700 -37766821 - L1ME3A LINE L1 -254 5916 5876 22 35 0 0 chr15 63613851 63613880 -37766641 + GC_rich Low_complexity Low_complexity 1 29 0 263 247 25 49 chr15 63614221 63614302 -37766219 - MIR SINE MIR -63 145 67 468 163 269 28 chr15 63614795 63614936 -37765585 + MIR3 SINE MIR 33 207 -1 374 272 0 116 chr15 63615828 63615879 -37764642 - MIR SINE MIR -74 134 144 2572 98 29 5 chr15 63615879 63616257 -37764264 - L1PA11 LINE L1 -2 6172 5786 374 272 0 116 chr15 63616257 63616360 -37764161 - MIR SINE MIR -63 145 32 610 217 164 0 chr15 63616895 63617084 -37763437 + MIR SINE MIR 1 220 -42 378 0 0 0 chr15 63617152 63617194 -37763327 + (TG)n Simple_repeat Simple_repeat 2 43 0 910 276 0 0 chr15 63617471 63617670 -37762851 - MLT1B LTR MaLR -4 386 188 271 256 53 75 chr15 63618940 63619073 -37761448 - MIR SINE MIR -55 153 63 1903 94 87 7 chr15 63619544 63619820 -37760701 - AluSp SINE Alu -15 298 1 180 135 0 0 chr15 63622209 63622246 -37758275 + (T)n Simple_repeat Simple_repeat 1 37 0 2234 91 0 7 chr15 63622271 63622579 -37757942 - AluSg SINE Alu -4 306 1 209 258 129 0 chr15 63622944 63623006 -37757515 + L2 LINE L2 3244 3313 0 2013 115 3 39 chr15 63623542 63623677 -37756844 + AluSq SINE Alu 1 139 -174 2076 123 3 0 chr15 63623677 63623970 -37756551 + AluSp SINE Alu 1 294 -19 2013 115 3 39 chr15 63623970 63624146 -37756375 + AluSq SINE Alu 139 301 -12 1795 173 0 0 chr15 63624283 63624584 -37755937 - AluJb SINE Alu -11 301 1 912 186 12 12 chr15 63625174 63625341 -37755180 - AluJo SINE Alu -31 281 115 2951 160 66 10 chr15 63626348 63626861 -37753660 - MER21A LTR ERV1 -4 927 386 971 48 8 0 chr15 63626869 63626994 -37753527 - AluY SINE Alu -7 304 179 1625 144 45 34 chr15 63627375 63627666 -37752855 + AluJb SINE Alu 1 294 -18 2197 81 3 3 chr15 63627742 63628038 -37752483 + AluSp SINE Alu 1 296 -17 2152 88 3 0 chr15 63628040 63628323 -37752198 + AluSp SINE Alu 3 286 -27 1809 116 3 70 chr15 63628877 63629205 -37751316 + AluSg SINE Alu 2 307 -3 1474 205 129 14 chr15 63629234 63629659 -37750862 + L1ME1 LINE L1 5585 6058 -108 2066 97 20 3 chr15 63629728 63630028 -37750493 + AluSx SINE Alu 1 305 -7 1541 93 5 9 chr15 63630028 63630242 -37750279 + AluY SINE Alu 84 296 -15 432 229 66 12 chr15 63630621 63630757 -37749764 + L1ME1 LINE L1 6034 6333 -1 332 148 16 188 chr15 63631134 63631194 -37749327 - MER5A DNA MER1_type -83 106 37 2081 109 14 3 chr15 63631194 63631488 -37749033 + AluSx SINE Alu 1 297 -15 1942 123 26 23 chr15 63631489 63631657 -37748864 - L1MB3 LINE L1 -4 6179 6013 2286 86 0 7 chr15 63631657 63631960 -37748561 + AluSx SINE Alu 3 303 -9 1942 123 26 23 chr15 63631960 63632141 -37748380 - L1MB3 LINE L1 -170 6013 5829 332 148 16 188 chr15 63632141 63632206 -37748315 - MER5A DNA MER1_type -151 38 1 2180 107 0 7 chr15 63632508 63632818 -37747703 + AluSg SINE Alu 1 308 -2 1842 232 91 9 chr15 63632845 63633385 -37747136 + L1ME1 LINE L1 5556 6145 -21 2044 83 4 7 chr15 63633385 63633662 -37746859 + AluSq SINE Alu 1 276 -37 1842 232 91 9 chr15 63633662 63633682 -37746839 + L1ME1 LINE L1 6145 6162 -4 * 14395 17 3 1 chr15 63633664 63636090 -37744431 + L1HS LINE L1 3728 6155 0 283 282 94 0 chr15 63636451 63636568 -37743953 + MIR SINE MIR 129 256 -6 243 326 22 22 chr15 63636800 63636889 -37743632 - MIR3 SINE MIR -105 103 15 864 200 0 6 chr15 63637586 63637751 -37742770 - AluJb SINE Alu -11 301 138 285 198 62 46 chr15 63637761 63637860 -37742661 - MLT1F LTR MaLR -4 538 453 279 282 12 24 chr15 63637983 63638068 -37742453 - MLT1H LTR MaLR -395 154 71 676 239 148 0 chr15 63638113 63638289 -37742232 + MIR SINE MIR 51 252 -10 2178 102 3 3 chr15 63638392 63638695 -37741826 + AluSg SINE Alu 1 303 -7 1879 109 3 11 chr15 63639424 63639708 -37740813 - AluSx SINE Alu -11 301 20 288 402 0 0 chr15 63639748 63639845 -37740676 + L2 LINE L2 3147 3243 -29 1679 111 82 0 chr15 63639854 63640133 -37740388 - AluSc SINE Alu -7 302 1 1766 134 32 0 chr15 63640134 63640411 -37740110 - AluSq SINE Alu -18 295 10 2274 97 0 0 chr15 63640535 63640835 -37739686 - AluSq SINE Alu -13 300 1 2603 39 3 0 chr15 63640843 63641153 -37739368 - AluY SINE Alu 0 311 1 343 286 0 0 chr15 63641158 63641242 -37739279 + MIR SINE MIR 71 154 -108 289 206 23 119 chr15 63641511 63641680 -37738841 + L1MC4 LINE L1 7309 7493 -549 2011 112 0 7 chr15 63641680 63641965 -37738556 + AluSg SINE Alu 9 291 -19 289 206 23 119 chr15 63641965 63641979 -37738542 + L1MC4 LINE L1 7493 7507 -535 1623 136 14 41 chr15 63641979 63642274 -37738247 + AluJb SINE Alu 5 291 -21 289 206 23 119 chr15 63642274 63642357 -37738164 + L1MC4 LINE L1 7507 7653 -389 990 176 0 0 chr15 63642361 63642526 -37737995 + AluJb SINE Alu 140 304 -8 311 325 142 0 chr15 63642526 63642621 -37737900 + L1MC4 LINE L1 7643 7723 -319 2174 89 10 3 chr15 63642621 63642925 -37737596 - AluSx SINE Alu -6 306 1 311 325 142 0 chr15 63642925 63642998 -37737523 + L1MC4 LINE L1 7723 7835 -207 315 235 140 7 chr15 63642999 63643135 -37737386 + L1MC4 LINE L1 7872 8025 -17 784 169 12 58 chr15 63643306 63643478 -37737043 - AluJ SINE Alu -19 293 130 1890 112 7 0 chr15 63643478 63643747 -37736774 - AluSg SINE Alu -39 271 1 269 91 242 0 chr15 63643759 63643825 -37736696 - L1PA16 LINE L1 -6 6160 6079 21 36 0 0 chr15 63643841 63643869 -37736652 + AT_rich Low_complexity Low_complexity 1 28 0 795 144 8 15 chr15 63644042 63644174 -37736347 - AluJ SINE Alu -169 133 3 467 281 50 118 chr15 63645329 63645805 -37734716 - L2 LINE L2 -4 3268 2825 420 300 143 25 chr15 63646389 63646746 -37733775 - L1M4 LINE L1 -1626 4520 4122 435 252 42 14 chr15 63646852 63646995 -37733526 - MIR3 SINE MIR 0 208 62 1078 120 6 23 chr15 63648059 63648234 -37732287 + AluSg/x SINE Alu 135 306 -6 456 273 77 23 chr15 63648915 63649105 -37731416 - MIR SINE MIR -55 207 6 844 165 57 6 chr15 63649159 63649317 -37731204 - MER3 DNA MER1_type -43 166 1 187 237 40 66 chr15 63649354 63649430 -37731091 - MIR SINE MIR -113 149 76 1678 105 146 4 chr15 63650603 63650875 -37729646 + AluSq SINE Alu 1 307 0 218 195 0 78 chr15 63651342 63651419 -37729102 + MIR SINE MIR 111 181 -81 933 184 0 12 chr15 63651561 63651724 -37728797 + FRAM SINE Alu 12 172 -4 395 250 100 21 chr15 63651812 63651952 -37728569 + MIR SINE MIR 4 154 -108 182 276 106 49 chr15 63652969 63653092 -37727429 - MIR SINE MIR -60 202 73 252 247 104 0 chr15 63653837 63653914 -37726607 - MIR3 SINE MIR -14 194 110 193 380 0 0 chr15 63655774 63655845 -37724676 - MIR SINE MIR -108 100 30 1035 170 12 0 chr15 63656540 63656711 -37723810 - FAM SINE Alu -2 173 1 2290 94 7 0 chr15 63656722 63657050 -37723471 - AluSx SINE Alu 0 312 1 225 159 0 0 chr15 63657738 63657782 -37722739 + T-rich Low_complexity Low_complexity 1 44 0 1386 234 48 105 chr15 63658034 63658632 -37721889 - MER21B LTR ERV1 -158 705 142 420 232 72 16 chr15 63659108 63659233 -37721288 - MER77 LTR ERV1 -408 197 66 289 267 44 30 chr15 63659275 63659410 -37721111 + L2 LINE L2 2394 2530 -784 185 247 124 79 chr15 63660250 63660339 -37720182 + L2 LINE L2 3161 3253 -19 1908 153 3 20 chr15 63661142 63661443 -37719078 + AluJb SINE Alu 1 296 -16 2301 110 68 3 chr15 63661810 63662164 -37718357 - MER51B LTR ERV1 0 377 1 22 35 0 0 chr15 63662303 63662332 -37718189 + AT_rich Low_complexity Low_complexity 1 29 0 2236 65 57 0 chr15 63662521 63662800 -37717721 - AluY SINE Alu -16 295 1 345 136 0 57 chr15 63712815 63712903 -37667618 + (GGA)n Simple_repeat Simple_repeat 2 84 0 193 200 0 80 chr15 63713046 63713121 -37667400 - MIR SINE MIR -91 171 103 1185 129 53 0 chr15 63713562 63713733 -37666788 + AluSx SINE Alu 8 187 -125 739 125 9 0 chr15 63713733 63713845 -37666676 + LTR8 LTR ERV1 579 691 0 24 85 0 0 chr15 63714070 63714129 -37666392 + AT_rich Low_complexity Low_complexity 1 59 0 2170 110 0 10 chr15 63714312 63714604 -37665917 + AluSg1 SINE Alu 1 289 -20 3061 128 18 73 chr15 63714725 63714904 -37665617 - Tigger3b DNA MER2_type -2457 571 384 1850 107 110 7 chr15 63714904 63715176 -37665345 - AluSc SINE Alu -9 300 1 3061 128 18 73 chr15 63715176 63715398 -37665123 - Tigger3b DNA MER2_type -2644 384 211 1559 158 15 40 chr15 63715398 63715670 -37664851 - AluJo SINE Alu -19 293 29 3061 128 18 73 chr15 63715670 63715871 -37664650 - Tigger3b DNA MER2_type -2817 211 1 467 279 134 40 chr15 63716226 63716494 -37664027 - L1M4 LINE L1 -659 5462 5200 2372 100 3 3 chr15 63716512 63716823 -37663698 - AluSp SINE Alu -2 311 1 638 142 8 14 chr15 63716862 63716976 -37663545 + AluJ SINE Alu 12 125 -187 180 0 0 0 chr15 63716976 63716996 -37663525 + (TA)n Simple_repeat Simple_repeat 2 21 0 638 142 8 14 chr15 63716996 63717129 -37663392 + AluJ SINE Alu 125 307 -5 4407 129 2 3 chr15 63717307 63717941 -37662580 - MER41B LTR ERV1 0 635 3 300 269 166 21 chr15 63717958 63718103 -37662418 - L1MC4a LINE L1 -1916 5892 5727 216 0 0 0 chr15 63718103 63718127 -37662394 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1592 96 0 5 chr15 63718129 63718328 -37662193 - AluSg/x SINE Alu -31 281 84 610 233 164 43 chr15 63718347 63718579 -37661942 - MIR SINE MIR 0 262 3 289 333 108 3 chr15 63718649 63718863 -37661658 - MIR SINE MIR -6 256 23 473 255 38 22 chr15 63718894 63719078 -37661443 - L1MC4a LINE L1 -402 5719 5533 695 254 34 93 chr15 63719372 63719445 -37661076 + Charlie8 DNA MER1_type 206 282 -2135 2459 77 0 10 chr15 63719445 63719756 -37660765 - AluY SINE Alu -3 308 1 695 254 34 93 chr15 63719756 63720037 -37660484 + Charlie8 DNA MER1_type 282 539 -1878 186 339 46 9 chr15 63720632 63720741 -37659780 + L2 LINE L2 2947 3059 -213 336 231 37 0 chr15 63720799 63720907 -37659614 - L1ME3 LINE L1 -29 6133 6022 5333 44 9 6 chr15 63720913 63721566 -37658955 + L1PA5 LINE L1 5500 6154 0 475 263 88 7 chr15 63721811 63721948 -37658573 + MER5B DNA MER1_type 7 154 -24 466 191 27 27 chr15 63721930 63722040 -37658481 - MER5A DNA MER1_type -73 116 7 * 307 185 15 0 chr15 63722049 63722114 -37658407 + MER5A DNA MER1_type 32 97 -92 300 167 0 0 chr15 63722327 63722381 -37658140 + L1ME3A LINE L1 6069 6122 -48 288 240 96 48 chr15 63722620 63722675 -37657846 + MIR SINE MIR 114 165 -97 2395 103 0 6 chr15 63722675 63722987 -37657534 - AluSx SINE Alu -2 310 1 288 240 96 48 chr15 63722987 63723056 -37657465 + MIR SINE MIR 165 244 -18 437 297 47 8 chr15 63723142 63723270 -37657251 + MIR SINE MIR 60 192 -70 263 281 0 0 chr15 63723697 63723761 -37656760 - MIR SINE MIR -81 181 118 194 216 118 0 chr15 63723777 63723828 -37656693 + L2 LINE L2 3188 3244 -69 297 0 0 0 chr15 63723877 63723910 -37656611 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 285 119 0 0 chr15 63723912 63723954 -37656567 - Alu SINE Alu -23 279 238 2323 75 7 0 chr15 63724071 63724351 -37656170 - AluY SINE Alu -29 282 1 2363 112 0 6 chr15 63724353 63724665 -37655856 - AluSx SINE Alu -2 310 1 588 281 78 38 chr15 63725096 63725333 -37655188 - MIR SINE MIR -14 248 3 1936 148 57 48 chr15 63725457 63725503 -37655018 - THE1C LTR MaLR 0 375 331 2566 55 0 26 chr15 63725503 63725814 -37654707 + AluY SINE Alu 1 303 -8 1936 148 57 48 chr15 63725814 63726139 -37654382 - THE1C LTR MaLR -44 331 1 400 311 57 28 chr15 63726449 63726626 -37653895 - MIR3 SINE MIR -14 194 13 399 260 39 8 chr15 63726794 63726921 -37653600 - MIR SINE MIR -61 147 17 1006 183 117 117 chr15 63727276 63727636 -37652885 - MLT1A1 LTR MaLR 0 365 6 309 300 100 38 chr15 63728185 63728345 -37652176 + L1ME4a LINE L1 5951 6120 -1 693 194 28 51 chr15 63728712 63728974 -37651547 - MIR SINE MIR -3 259 32 496 255 223 0 chr15 63729421 63729578 -37650943 + MIR SINE MIR 56 247 -15 434 261 34 0 chr15 63729592 63729711 -37650810 - L2 LINE L2 -1 3271 3149 472 246 18 0 chr15 63729712 63729822 -37650699 + MER81 DNA DNA 3 114 0 205 281 28 112 chr15 63729920 63730098 -37650423 - L2 LINE L2 -209 3063 2901 31 76 0 0 chr15 63730842 63730908 -37649613 + AT_rich Low_complexity Low_complexity 1 66 0 332 304 75 25 chr15 63730965 63731126 -37649395 - MIR SINE MIR -33 229 61 441 0 0 0 chr15 63732034 63732083 -37648438 + (CA)n Simple_repeat Simple_repeat 2 50 0 203 283 283 9 chr15 63732511 63732624 -37647897 + L2 LINE L2 3127 3270 -2 181 333 68 19 chr15 63733013 63733175 -37647346 + L2 LINE L2 2890 3059 -213 429 275 49 34 chr15 63733328 63733489 -37647032 + MIR SINE MIR 25 189 -19 316 204 68 30 chr15 63733510 63733642 -37646879 + MER115 DNA AcHobo 94 230 -463 689 225 209 36 chr15 63733654 63733903 -37646618 + MER115 DNA AcHobo 397 688 -5 186 171 0 0 chr15 63734209 63734244 -37646277 - L2 LINE L2 -250 3063 3029 304 224 0 26 chr15 63734913 63734989 -37645532 - MIR SINE MIR -117 91 18 343 230 11 23 chr15 63735168 63735255 -37645266 - MIR SINE MIR -111 151 66 524 227 16 39 chr15 63735343 63735527 -37644994 + MIR SINE MIR 4 145 -63 2297 110 3 0 chr15 63736300 63736601 -37643920 - AluSx SINE Alu -10 302 1 514 292 38 38 chr15 63736802 63737018 -37643503 + MIR SINE MIR 19 233 -29 21 36 0 0 chr15 63737079 63737107 -37643414 + AT_rich Low_complexity Low_complexity 1 28 0 1756 161 24 7 chr15 63737202 63737493 -37643028 - AluSx SINE Alu -16 296 1 2172 141 16 0 chr15 63738206 63738510 -37642011 + AluSx SINE Alu 1 309 -3 942 254 15 11 chr15 63738582 63738842 -37641679 + MIR SINE MIR 2 262 0 216 186 80 23 chr15 63739223 63739307 -37641214 - MIR SINE MIR -61 147 53 357 250 88 44 chr15 63739444 63739604 -37640917 - MIR3 SINE MIR -27 181 15 348 217 96 31 chr15 63740001 63740140 -37640381 + MIR SINE MIR 29 166 -66 1683 166 61 14 chr15 63740204 63740499 -37640022 + AluJb SINE Alu 1 309 -3 388 238 20 137 chr15 63740690 63740989 -37639532 - L1ME4a LINE L1 -48 6073 5810 400 289 58 0 chr15 63741521 63741625 -37638896 + L2 LINE L2 3204 3313 0 23 33 0 0 chr15 63742385 63742415 -37638106 + AT_rich Low_complexity Low_complexity 1 30 0 1830 175 10 3 chr15 63742424 63742721 -37637800 - AluJo SINE Alu -13 299 1 2380 95 0 0 chr15 63743009 63743303 -37637218 + AluSc SINE Alu 1 294 -15 2314 92 17 0 chr15 63744322 63744617 -37635904 + AluSx SINE Alu 2 301 -11 2633 57 0 0 chr15 63745403 63745703 -37634818 + AluY SINE Alu 1 300 -11 2273 112 3 13 chr15 63745804 63745940 -37634581 + AluSq SINE Alu 1 137 -176 2353 86 7 3 chr15 63745940 63746241 -37634280 + AluSg SINE Alu 1 302 -8 2273 112 3 13 chr15 63746241 63746409 -37634112 + AluSq SINE Alu 137 302 -11 688 291 84 0 chr15 63746478 63746777 -37633744 + L1MC4a LINE L1 5585 5908 -1900 294 151 209 23 chr15 63747150 63747236 -37633285 + Charlie5 DNA MER1_type 2 103 -2509 1640 102 5 0 chr15 63747285 63747500 -37633021 + AluSg/x SINE Alu 94 309 -1 3953 152 97 41 chr15 63747500 63748237 -37632284 + L1MB2 LINE L1 5044 5855 -316 2333 104 0 0 chr15 63748237 63748535 -37631986 - AluSx SINE Alu -14 298 1 3953 152 97 41 chr15 63748535 63748871 -37631650 + L1MB2 LINE L1 5855 6171 0 791 273 95 14 chr15 63748885 63749206 -37631315 + MLT1L LTR MaLR 236 615 0 646 235 22 0 chr15 63750462 63750598 -37629923 + MER5A DNA MER1_type 1 139 -50 2314 127 0 0 chr15 63750615 63750923 -37629598 - AluSx SINE Alu -4 308 1 630 154 6 130 chr15 63750948 63751110 -37629411 - FLAM_A SINE Alu 0 142 1 41 47 4 0 chr15 63751408 63751507 -37629014 + GC_rich Low_complexity Low_complexity 1 64 0 22 0 0 0 chr15 63751596 63751618 -37628903 + GC_rich Low_complexity Low_complexity 1 22 0 421 206 61 30 chr15 63751976 63752107 -37628414 - L1ME3A LINE L1 -38 6132 5998 349 186 48 149 chr15 63752218 63752406 -37628115 - MIR SINE MIR 0 262 94 1971 107 63 27 chr15 63752644 63752944 -37627577 - AluSx SINE Alu -1 311 1 2161 116 3 16 chr15 63752955 63753258 -37627263 - AluSx SINE Alu -13 299 1 426 195 59 42 chr15 63753258 63753376 -37627145 - MIR SINE MIR -111 151 32 325 239 0 0 chr15 63754536 63754603 -37625918 + L2 LINE L2 3246 3312 -1 512 235 86 25 chr15 63754640 63754802 -37625719 - MIR SINE MIR -43 219 48 1325 245 101 43 chr15 63755329 63756101 -37624420 - L2 LINE L2 -1 3312 2504 251 267 208 0 chr15 63756169 63756270 -37624251 + MIR SINE MIR 141 262 0 228 260 52 13 chr15 63756297 63756392 -37624129 + MIR SINE MIR 60 157 -51 340 209 30 0 chr15 63756476 63756543 -37623978 + MIR SINE MIR 155 223 -39 222 37 0 0 chr15 63756617 63756644 -37623877 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 2161 106 3 3 chr15 63756845 63757162 -37623359 - AluSq SINE Alu 0 317 1 186 164 0 115 chr15 63757457 63757518 -37623003 - L2 LINE L2 -8 3264 3211 215 171 0 0 chr15 63757808 63757849 -37622672 + L2 LINE L2 2937 2977 -337 273 227 27 27 chr15 63758054 63758129 -37622392 - L1ME LINE L1 -517 5604 5530 261 313 40 0 chr15 63758126 63758225 -37622296 + L1MC/D LINE L1 5602 5704 -2104 * 2513 86 0 0 chr15 63758406 63758709 -37621812 + AluSq SINE Alu 1 303 -10 884 159 8 0 chr15 63759118 63759250 -37621271 + FAM SINE Alu 24 156 -29 186 43 0 0 chr15 63759250 63759273 -37621248 + (CA)n Simple_repeat Simple_repeat 1 23 0 35 24 0 0 chr15 63759278 63759320 -37621201 + AT_rich Low_complexity Low_complexity 1 42 0 789 215 82 35 chr15 63759678 63759934 -37620587 + ORSL DNA AcHobo 8 275 0 231 295 50 50 chr15 63759993 63760132 -37620389 + MIR3 SINE MIR 10 148 -60 605 207 12 61 chr15 63760394 63760558 -37619963 + MER5B DNA MER1_type 1 156 -22 1513 169 61 101 chr15 63760956 63761364 -37619157 - MSTD LTR MaLR -4 392 1 2101 143 3 3 chr15 63761520 63761827 -37618694 + AluSx SINE Alu 1 307 -5 2631 60 0 0 chr15 63762174 63762475 -37618046 + AluY SINE Alu 1 301 -10 238 354 29 50 chr15 63762526 63762720 -37617801 + L1MEd LINE L1 513 701 -5418 2119 161 0 0 chr15 63762720 63763030 -37617491 + AluJb SINE Alu 1 310 -2 238 354 29 50 chr15 63763030 63763115 -37617406 + L1MEd LINE L1 701 786 -5333 2649 80 3 0 chr15 63763276 63763628 -37616893 - THE1A LTR MaLR -2 353 1 2980 77 7 0 chr15 63763628 63764031 -37616490 - THE1A-int LTR MaLR 0 1580 1175 473 224 204 7 chr15 63764393 63764540 -37615981 + MER5B DNA MER1_type 1 176 -2 1920 163 27 0 chr15 63765006 63765306 -37615215 - AluJb SINE Alu -4 308 1 258 308 17 40 chr15 63765415 63765578 -37614943 + MIR3 SINE MIR 16 170 -38 2401 99 0 6 chr15 63765765 63766079 -37614442 + AluSq SINE Alu 1 312 -1 975 135 0 6 chr15 63766311 63766555 -37613966 + AluJ SINE Alu 3 294 -18 1727 244 64 43 chr15 63766637 63767166 -37613355 - MLT1F1 LTR MaLR 0 567 3 1831 145 62 24 chr15 63767182 63767472 -37613049 - AluJo SINE Alu -11 301 1 1062 127 6 12 chr15 63767585 63767758 -37612763 + L1PA10 LINE L1 5985 6156 -12 2302 95 0 3 chr15 63767828 63768157 -37612364 + AluSc SINE Alu 1 328 0 204 159 9 196 chr15 63768506 63768594 -37611927 + MIR SINE MIR 87 153 -109 2251 110 10 0 chr15 63768594 63768893 -37611628 + AluSq SINE Alu 2 303 -10 204 159 9 196 chr15 63768893 63768911 -37611610 + MIR SINE MIR 153 173 -89 2130 142 3 0 chr15 63769226 63769528 -37610993 + AluSx SINE Alu 1 303 -9 242 301 179 12 chr15 63769531 63769704 -37610817 + L1ME2 LINE L1 5624 5825 -1983 1771 153 13 39 chr15 63769705 63770012 -37610509 + AluJo SINE Alu 1 299 -13 206 237 0 0 chr15 63771278 63771316 -37609205 + (TG)n Simple_repeat Simple_repeat 2 39 0 420 248 9 0 chr15 63771780 63771889 -37608632 + L1ME2 LINE L1 6045 6154 -10 2012 113 14 7 chr15 63772011 63772294 -37608227 + AluSx SINE Alu 1 285 -27 2477 75 0 10 chr15 63772394 63772701 -37607820 - AluY SINE Alu -7 304 1 1765 89 67 133 chr15 63772702 63772867 -37607654 - AluSx SINE Alu -17 295 121 438 20 0 0 chr15 63772867 63772918 -37607603 + (TG)n Simple_repeat Simple_repeat 2 52 0 1765 89 67 133 chr15 63772918 63772933 -37607588 - AluSx SINE Alu -191 121 107 2313 94 3 0 chr15 63772933 63773221 -37607300 - AluSp SINE Alu -24 289 1 1765 89 67 133 chr15 63773221 63773354 -37607167 - AluSx SINE Alu -205 107 2 867 171 79 0 chr15 63774669 63774821 -37605700 + AluJo SINE Alu 83 246 -66 1048 82 11 28 chr15 63774831 63775013 -37605508 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 188 284 92 80 chr15 63775027 63775277 -37605244 - L2 LINE L2 -194 3078 2826 1157 227 115 9 chr15 63778381 63778711 -37601810 - MLT1A1 LTR MaLR 0 365 1 2251 108 3 0 chr15 63778853 63779148 -37601373 + AluSq SINE Alu 1 296 -17 2448 103 0 0 chr15 63779305 63779616 -37600905 - AluSx SINE Alu -1 311 1 868 278 67 33 chr15 63780957 63781346 -37599175 - L2 LINE L2 -2603 711 310 2134 129 0 0 chr15 63781638 63781932 -37598589 - AluSx SINE Alu -18 294 1 2294 98 0 7 chr15 63782014 63782311 -37598210 - AluSg SINE Alu -15 295 1 650 178 11 39 chr15 63782532 63782712 -37597809 + C-rich Low_complexity Low_complexity 6 180 0 * 906 180 0 0 chr15 63782668 63782846 -37597675 + CT-rich Low_complexity Low_complexity 3 180 0 702 237 58 0 chr15 63782855 63783011 -37597510 - FRAM SINE Alu -1 165 1 826 240 83 59 chr15 63783020 63783441 -37597080 - MER20B DNA MER1_type -31 752 322 534 260 14 0 chr15 63783440 63783586 -37596935 + LTR16A LTR ERVL 303 450 0 * 518 282 75 70 chr15 63784363 63784604 -37595917 - MLT1J2 LTR MaLR -8 442 201 447 281 106 9 chr15 63784591 63784808 -37595713 - MLT1J LTR MaLR -273 238 1 * 2309 121 36 43 chr15 63785027 63785223 -37595298 + LTR23 LTR ERV1 3 199 -238 2386 96 3 0 chr15 63785223 63785525 -37594996 + AluSp SINE Alu 1 303 -10 2309 121 36 43 chr15 63785525 63785622 -37594899 + LTR23 LTR ERV1 199 295 -142 1944 165 0 3 chr15 63785622 63785919 -37594602 + AluJb SINE Alu 1 296 -16 2309 121 36 43 chr15 63785919 63786062 -37594459 + LTR23 LTR ERV1 295 437 0 1906 187 61 3 chr15 63786114 63786493 -37594028 - MLT1E2 LTR MaLR -4 622 222 496 299 41 7 chr15 63786515 63786662 -37593859 + L2 LINE L2 3161 3312 -1 197 241 0 69 chr15 63786853 63786911 -37593610 + MIR SINE MIR 25 78 -130 213 267 100 22 chr15 63787039 63787129 -37593392 + MIR SINE MIR 104 200 -62 * 396 247 11 0 chr15 63787120 63787213 -37593308 - L2 LINE L2 0 3313 3220 1590 166 19 4 chr15 63787581 63787716 -37592805 + AluJb SINE Alu 11 143 -169 2553 68 0 7 chr15 63787716 63788025 -37592496 + AluSg SINE Alu 1 307 -3 1590 166 19 4 chr15 63788025 63788160 -37592361 + AluJb SINE Alu 143 285 -27 789 281 98 24 chr15 63789954 63790289 -37590232 - MLT1J LTR MaLR -151 360 1 542 346 35 0 chr15 63790292 63790520 -37590001 - L2 LINE L2 -649 2665 2430 915 238 87 9 chr15 63790927 63791158 -37589363 + L1MC/D LINE L1 5523 5771 -2037 4563 134 13 11 chr15 63791165 63791920 -37588601 + Tigger2 DNA MER2_type 1 757 -1961 2081 170 0 0 chr15 63792005 63792316 -37588205 - AluSx SINE Alu -1 311 1 2038 117 79 0 chr15 63792333 63792623 -37587898 - AluSp SINE Alu 0 313 1 1043 136 87 5 chr15 63792623 63792820 -37587701 + Tigger2 DNA MER2_type 2471 2687 -21 343 252 126 24 chr15 63794368 63794490 -37586031 - MIR SINE MIR -79 183 49 268 246 112 42 chr15 63794490 63794659 -37585862 + MIR3 SINE MIR 3 182 -80 273 339 0 8 chr15 63795617 63795741 -37584780 + MIR3 SINE MIR 81 203 -5 243 246 43 0 chr15 63795837 63795906 -37584615 - MIR SINE MIR -74 188 117 311 253 22 11 chr15 63796629 63796720 -37583801 + MIR SINE MIR 55 146 -116 313 306 135 10 chr15 63796953 63797035 -37583486 + L1MC4 LINE L1 7820 7890 -152 2381 99 0 3 chr15 63797035 63797347 -37583174 + AluSq SINE Alu 1 311 -2 313 306 135 10 chr15 63797347 63797457 -37583064 + L1MC4 LINE L1 7890 8036 -6 273 282 12 24 chr15 63798294 63798379 -37582142 - L2 LINE L2 -7 3265 3182 247 333 24 40 chr15 63798402 63798528 -37581993 + L2 LINE L2 3141 3264 -8 273 280 32 80 chr15 63798894 63798958 -37581563 - MIR SINE MIR -96 166 109 2239 109 24 0 chr15 63798958 63799251 -37581270 + AluSg SINE Alu 1 300 -10 273 280 32 80 chr15 63799251 63799311 -37581210 - MIR SINE MIR -153 109 48 260 253 131 0 chr15 63799499 63799598 -37580923 - MIR SINE MIR -105 157 46 289 361 34 0 chr15 63800337 63800456 -37580065 + MIR SINE MIR 70 192 -70 385 293 51 38 chr15 63800851 63801008 -37579513 - MIR SINE MIR -56 206 48 259 340 117 5 chr15 63801080 63801268 -37579253 + MIR SINE MIR 47 255 -7 269 262 33 0 chr15 63801428 63801506 -37579015 + L2 LINE L2 3192 3313 0 417 196 65 0 chr15 63802548 63802640 -37577881 - MIR SINE MIR -119 143 46 234 330 21 10 chr15 63802643 63802740 -37577781 + L2 LINE L2 3171 3268 -4 2146 114 0 7 chr15 63802766 63803072 -37577449 - AluSg SINE Alu -1 309 6 2981 191 70 50 chr15 63803174 63803536 -37576985 - L1M4 LINE L1 -882 5264 4911 1506 171 7 68 chr15 63803536 63803846 -37576675 - AluJo SINE Alu -21 291 1 2981 191 70 50 chr15 63803846 63804381 -37576140 - L1M4 LINE L1 -1235 4911 4349 * 3156 252 57 25 chr15 63804366 63804446 -37576075 + L1MEc LINE L1 35 111 -6285 2298 97 0 0 chr15 63804446 63804746 -37575775 + AluSg SINE Alu 1 300 -10 3156 252 57 25 chr15 63804746 63805379 -37575142 + L1MEc LINE L1 111 793 -5603 2217 103 3 0 chr15 63805379 63805680 -37574841 + AluSg SINE Alu 1 302 -8 3156 252 57 25 chr15 63805680 63805976 -37574545 + L1MEc LINE L1 793 1078 -5318 226 266 15 15 chr15 63806134 63806210 -37574311 + MIR SINE MIR 77 147 -61 2023 191 13 101 chr15 63806502 63806958 -37573563 + MLT1D LTR MaLR 1 401 -104 2132 123 13 0 chr15 63806958 63807266 -37573255 - AluSx SINE Alu 0 312 1 2023 191 13 101 chr15 63807266 63807363 -37573158 + MLT1D LTR MaLR 401 505 0 902 272 16 29 chr15 63807629 63807847 -37572674 + MIR SINE MIR 9 225 -37 1565 93 4 18 chr15 63807847 63808072 -37572449 - AluSg/x SINE Alu -7 303 82 902 272 16 29 chr15 63808072 63808099 -37572422 + MIR SINE MIR 225 251 -11 517 270 116 37 chr15 63809013 63809254 -37571267 - L2 LINE L2 -2 3311 3052 306 286 0 0 chr15 63809269 63809346 -37571175 - MIR SINE MIR 0 262 186 672 205 111 6 chr15 63809387 63809558 -37570963 + MIR SINE MIR 53 241 -21 290 285 91 8 chr15 63809584 63809704 -37570817 - L2 LINE L2 -307 2967 2825 274 182 0 41 chr15 63809765 63809886 -37570635 + C-rich Low_complexity Low_complexity 4 119 0 295 272 88 18 chr15 63810075 63810189 -37570332 - MIR3 SINE MIR -50 158 37 2192 111 3 13 chr15 63810628 63810943 -37569578 + AluSx SINE Alu 1 312 0 1936 168 52 52 chr15 63810947 63811335 -37569186 - MLT1B LTR MaLR 0 390 3 266 310 144 25 chr15 63811383 63811747 -37568774 - L2 LINE L2 -173 3099 2691 743 238 55 11 chr15 63811765 63811946 -37568575 - MER5A DNA MER1_type 0 189 1 246 164 15 45 chr15 63812356 63812424 -37568097 + (CACCC)n Simple_repeat Simple_repeat 1 65 0 689 236 60 30 chr15 63812490 63812689 -37567832 + MIR SINE MIR 56 260 -2 52 0 0 0 chr15 63812743 63812795 -37567726 + AT_rich Low_complexity Low_complexity 1 52 0 1847 132 0 0 chr15 63812888 63813153 -37567368 + AluSx SINE Alu 1 265 -47 249 108 0 0 chr15 63813153 63813190 -37567331 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 2416 78 3 0 chr15 63813813 63814122 -37566399 + AluSg SINE Alu 1 310 0 263 263 9 26 chr15 63814906 63815020 -37565501 + (TG)n Simple_repeat Simple_repeat 2 113 0 449 271 49 0 chr15 63815189 63815333 -37565188 + L2 LINE L2 2931 3081 -232 933 81 8 0 chr15 63815334 63815457 -37565064 + AluJb SINE Alu 1 124 -188 1267 206 65 10 chr15 63816612 63816668 -37563853 - MER33 DNA MER1_type -2262 323 272 2171 100 3 3 chr15 63816668 63816967 -37563554 - AluSx SINE Alu -13 299 1 1267 206 65 10 chr15 63816967 63817216 -37563305 - MER33 DNA MER1_type -2313 272 1 213 39 0 0 chr15 63817510 63817536 -37562985 + (TG)n Simple_repeat Simple_repeat 1 26 0 233 239 15 15 chr15 63818322 63818389 -37562132 - MIR3 SINE MIR -25 183 117 267 318 54 23 chr15 63818463 63818592 -37561929 - MIR SINE MIR -87 175 43 3648 154 75 21 chr15 63819467 63819847 -37560674 + LTR62 LTR ERVK 1 359 -360 2244 107 3 0 chr15 63819847 63820157 -37560364 - AluSx SINE Alu 0 312 2 2064 137 0 0 chr15 63820158 63820457 -37560064 - AluSg SINE Alu -11 299 1 3648 154 75 21 chr15 63820457 63820755 -37559766 + LTR62 LTR ERVK 358 718 -1 242 237 0 149 chr15 63820787 63820857 -37559664 + MER81 DNA DNA 18 69 -45 1613 169 11 0 chr15 63820857 63821172 -37559349 + AluJb SINE Alu 3 320 0 242 237 0 149 chr15 63821172 63821213 -37559308 + MER81 DNA DNA 69 114 0 202 188 0 0 chr15 63821213 63821245 -37559276 + polypyrimidine Low_complexity Low_complexity 3 34 0 261 326 32 0 chr15 63822202 63822297 -37558224 + MIR SINE MIR 100 197 -65 610 214 0 0 chr15 63822508 63822620 -37557901 + L2 LINE L2 3192 3303 -10 1875 142 36 3 chr15 63822620 63822922 -37557599 + AluSx SINE Alu 1 312 0 504 282 35 7 chr15 63823036 63823178 -37557343 + MIR3 SINE MIR 59 204 -4 1757 161 3 23 chr15 63823792 63824097 -37556424 + AluJb SINE Alu 1 299 -13 1484 171 79 4 chr15 63824098 63824378 -37556143 + AluJb SINE Alu 3 303 -9 2357 85 0 3 chr15 63824557 63824862 -37555659 - AluSq SINE Alu -9 304 1 415 293 140 34 chr15 63825051 63825446 -37555075 - L1M4 LINE L1 -406 5778 5334 1878 158 0 16 chr15 63825446 63825763 -37554758 - AluJo SINE Alu 0 312 1 415 293 140 34 chr15 63825763 63825784 -37554737 - L1M4 LINE L1 -850 5334 5317 2571 87 11 0 chr15 63826166 63826522 -37553999 + L1PA16 LINE L1 5804 6163 -3 2149 122 3 0 chr15 63826538 63826841 -37553680 + AluSx SINE Alu 1 304 -8 248 282 13 13 chr15 63826846 63826924 -37553597 - MIR SINE MIR -59 149 72 24 0 0 0 chr15 63827123 63827147 -37553374 + AT_rich Low_complexity Low_complexity 1 24 0 781 160 0 8 chr15 63827154 63827273 -37553248 + FLAM_C SINE Alu 1 118 -15 23 0 0 0 chr15 63827289 63827312 -37553209 + AT_rich Low_complexity Low_complexity 1 23 0 360 265 23 45 chr15 63827795 63827927 -37552594 - MIR3 SINE MIR -38 170 42 818 200 5 67 chr15 63827986 63828196 -37552325 + MIR SINE MIR 56 252 -10 2138 152 5 49 chr15 63828572 63828771 -37551750 + MLT1B LTR MaLR 1 207 -183 2219 142 3 9 chr15 63828771 63829116 -37551405 - MER2 DNA MER2_type -1 343 1 2138 152 5 49 chr15 63829116 63829202 -37551319 + MLT1B LTR MaLR 207 295 -95 2369 80 0 3 chr15 63829202 63829514 -37551007 - AluSx SINE Alu -1 311 1 2138 152 5 49 chr15 63829514 63829635 -37550886 + MLT1B LTR MaLR 295 390 0 244 273 207 0 chr15 63829831 63829952 -37550569 - MIR SINE MIR -28 234 89 559 232 41 26 chr15 63830690 63830884 -37549637 + MIR3 SINE MIR 1 197 -11 2138 110 13 3 chr15 63831123 63831424 -37549097 - AluSx SINE Alu -7 305 2 284 276 79 0 chr15 63831432 63831508 -37549013 + MIR SINE MIR 104 185 -77 350 247 20 12 chr15 63832592 63832702 -37547819 + MIR SINE MIR 89 200 -31 236 280 27 27 chr15 63832813 63832888 -37547633 + MIR SINE MIR 20 94 -168 222 287 30 50 chr15 63833467 63833568 -37546953 - MIR3 SINE MIR -11 197 99 343 299 126 0 chr15 63833682 63833809 -37546712 + MIR SINE MIR 58 200 -62 500 233 112 42 chr15 63833832 63834047 -37546474 + MER106A DNA MER1_type 4 233 -3 231 337 37 37 chr15 63834415 63834578 -37545943 - L2 LINE L2 -223 3049 2887 1584 130 4 28 chr15 63834693 63834946 -37545575 - AluSx SINE Alu -62 250 4 217 263 38 25 chr15 63835248 63835328 -37545193 - L3b LINE CR1 -191 1392 1312 355 242 10 20 chr15 63835581 63835680 -37544841 + MIR3 SINE MIR 110 207 -1 687 314 80 27 chr15 63835683 63836021 -37544500 + L2 LINE L2 2917 3272 0 2251 102 3 0 chr15 63836574 63836878 -37543643 - AluSx SINE Alu -7 305 1 430 278 17 58 chr15 63836967 63837140 -37543381 - MIR SINE MIR -95 167 2 1364 124 60 0 chr15 63837261 63837462 -37543059 + AluJb SINE Alu 86 298 -14 426 250 115 7 chr15 63837738 63837886 -37542635 + MIR3 SINE MIR 16 179 -29 202 270 40 0 chr15 63839248 63839322 -37541199 - L2 LINE L2 -1391 1923 1847 350 297 45 0 chr15 63839333 63839488 -37541033 + L2 LINE L2 2583 2744 -570 229 333 78 23 chr15 63839851 63839980 -37540541 + L2 LINE L2 3137 3272 0 22 35 0 0 chr15 63840607 63840636 -37539885 + GC_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr15 63840992 63841015 -37539506 + (T)n Simple_repeat Simple_repeat 1 23 0 718 161 25 0 chr15 63841034 63841179 -37539342 - FLAM_C SINE Alu 0 148 1 1944 111 0 4 chr15 63842136 63842446 -37538075 - AluSg SINE Alu 0 309 1 342 269 73 54 chr15 63842495 63842672 -37537849 - MIR SINE MIR -63 145 16 238 231 0 90 chr15 63842694 63842772 -37537749 - MIR3 SINE MIR -29 179 109 310 263 0 75 chr15 63842845 63842978 -37537543 - MER5A DNA MER1_type -41 148 26 249 218 31 5 chr15 63843467 63843545 -37536976 - MIR SINE MIR -74 134 56 640 293 39 0 chr15 63843568 63843749 -37536772 - MIR SINE MIR -18 244 57 1983 99 92 0 chr15 63844038 63844321 -37536200 - AluSq SINE Alu -4 309 1 453 252 0 9 chr15 63844337 63844444 -37536077 + MIR3 SINE MIR 96 201 -7 273 311 20 0 chr15 63844541 63844689 -37535832 + (TG)n Simple_repeat Simple_repeat 1 151 0 313 283 16 43 chr15 63844710 63844894 -37535627 + (TG)n Simple_repeat Simple_repeat 2 180 0 191 167 24 0 chr15 63845543 63845585 -37534936 + CT-rich Low_complexity Low_complexity 2 44 0 438 127 0 0 chr15 63845586 63845657 -37534864 + (TCCCC)n Simple_repeat Simple_repeat 1 71 0 1912 147 0 20 chr15 63845659 63845828 -37534693 - AluJb SINE Alu -12 300 129 225 65 0 0 chr15 63845828 63845859 -37534662 + (TA)n Simple_repeat Simple_repeat 1 31 0 2205 77 0 3 chr15 63845859 63846144 -37534377 - AluY SINE Alu -27 284 1 1912 147 0 20 chr15 63846144 63846279 -37534242 - AluJb SINE Alu -181 131 1 404 231 26 8 chr15 63846772 63846889 -37533632 - MIR SINE MIR -95 167 49 285 359 25 38 chr15 63847617 63847776 -37532745 - MIR SINE MIR -91 171 15 306 250 169 15 chr15 63848226 63848362 -37532159 + MIR SINE MIR 96 252 -10 189 0 0 0 chr15 63848703 63848724 -37531797 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 646 272 0 82 chr15 63848731 63848974 -37531547 - L1ME1 LINE L1 -5 6161 5939 * 1702 177 37 29 chr15 63848960 63848977 -37531544 - L1ME1 LINE L1 -463 5703 5688 1398 155 143 19 chr15 63848977 63849126 -37531395 - AluJb SINE Alu -4 298 169 477 0 0 0 chr15 63849126 63849179 -37531342 + (TG)n Simple_repeat Simple_repeat 2 54 0 1398 155 143 19 chr15 63849179 63849294 -37531227 - AluJb SINE Alu -133 169 1 1702 177 37 29 chr15 63849294 63849655 -37530866 - L1ME1 LINE L1 -478 5688 5322 1562 98 0 0 chr15 63849670 63849874 -37530647 + AluSq SINE Alu 1 204 -109 1534 151 8 8 chr15 63849988 63850240 -37530281 - AluJo SINE Alu -1 311 60 576 226 0 133 chr15 63850264 63850490 -37530031 + L2 LINE L2 3105 3300 -13 239 297 9 72 chr15 63851480 63851591 -37528930 - L2 LINE L2 -211 3061 2958 340 235 21 109 chr15 63851607 63851816 -37528705 - MIR SINE MIR -54 208 18 183 80 0 0 chr15 63851998 63852023 -37528498 + (A)n Simple_repeat Simple_repeat 1 25 0 477 244 8 30 chr15 63852024 63852155 -37528366 + MIR SINE MIR 19 146 -62 188 289 0 0 chr15 63852339 63852384 -37528137 - MIR SINE MIR -35 227 183 1141 234 16 4 chr15 63853253 63853505 -37527016 - MIR SINE MIR -4 258 4 298 230 101 24 chr15 63853590 63853713 -37526808 + MIR SINE MIR 29 144 -64 400 227 98 110 chr15 63853933 63854197 -37526324 + MIR SINE MIR 2 262 0 2211 201 19 52 chr15 63854233 63854754 -37525767 + MLT1D LTR MaLR 2 505 0 2275 94 0 0 chr15 63854854 63855153 -37525368 + AluSx SINE Alu 1 299 -13 890 203 108 58 chr15 63855215 63855456 -37525065 + MLT1H LTR MaLR 14 266 -283 1455 236 105 31 chr15 63855480 63855966 -37524555 + MLT1F1 LTR MaLR 42 567 0 367 165 68 39 chr15 63856106 63856209 -37524312 + MLT1H LTR MaLR 437 542 -7 296 333 181 18 chr15 63856233 63856626 -37523895 - L2 LINE L2 -462 2852 2396 1323 287 83 12 chr15 63856753 63857237 -37523284 - LTR33 LTR ERVL 0 521 4 955 262 130 11 chr15 63857276 63857631 -37522890 + MLT1L LTR MaLR 209 605 -10 803 243 182 0 chr15 63858831 63859045 -37521476 - MIR SINE MIR -2 260 8 372 254 13 6 chr15 63859128 63859268 -37521253 + MIR SINE MIR 21 160 -48 831 224 67 106 chr15 63859646 63860003 -37520518 - MLT1I LTR MaLR -4 405 63 2235 99 3 0 chr15 63860026 63860329 -37520192 - AluSc SINE Alu -3 306 3 1928 78 45 0 chr15 63860341 63860660 -37519861 - AluY SINE Alu 0 331 1 334 277 23 15 chr15 63860724 63860854 -37519667 + Charlie8 DNA MER1_type 26 156 -2261 2285 141 34 3 chr15 63860878 63861232 -37519289 - MLT1A1 LTR MaLR 0 365 1 1023 195 37 148 chr15 63861254 63861453 -37519068 - MLT1J LTR MaLR -11 500 373 2058 107 48 0 chr15 63861453 63861743 -37518778 - AluSx SINE Alu -8 304 1 1023 195 37 148 chr15 63861743 63861974 -37518547 - MLT1J LTR MaLR -138 373 118 25 31 0 0 chr15 63862210 63862242 -37518279 + GC_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr15 63862544 63862571 -37517950 + GC_rich Low_complexity Low_complexity 1 27 0 204 158 0 0 chr15 63863008 63863046 -37517475 + (TG)n Simple_repeat Simple_repeat 1 38 0 21 71 0 0 chr15 63863136 63863178 -37517343 + GC_rich Low_complexity Low_complexity 1 42 0 180 111 0 0 chr15 63863751 63863778 -37516743 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 216 97 0 0 chr15 63864385 63864416 -37516105 + (CGG)n Simple_repeat Simple_repeat 2 32 0 24 67 0 0 chr15 63864538 63864583 -37515938 + GC_rich Low_complexity Low_complexity 1 45 0 31 82 0 0 chr15 63864711 63864784 -37515737 + GC_rich Low_complexity Low_complexity 1 73 0 23 0 0 0 chr15 63865141 63865164 -37515357 + GC_rich Low_complexity Low_complexity 1 23 0 341 291 19 10 chr15 63866700 63866803 -37513718 - L2 LINE L2 -11 3302 3199 200 324 15 0 chr15 63867213 63867281 -37513240 + MIR SINE MIR 46 114 -94 239 261 78 17 chr15 63867853 63867968 -37512553 + MIR3 SINE MIR 33 154 -54 2514 163 23 25 chr15 63869525 63869998 -37510523 + L1MB7 LINE L1 5694 6165 -19 427 305 23 0 chr15 63870050 63870181 -37510340 + MIR3 SINE MIR 68 201 -7 295 305 153 0 chr15 63870733 63870864 -37509657 + MIR3 SINE MIR 17 167 -41 367 183 211 63 chr15 63871139 63871281 -37509240 + MIR SINE MIR 36 198 -64 290 232 141 0 chr15 63871873 63871972 -37508549 - MIR3 SINE MIR -8 200 88 1032 186 5 0 chr15 63872104 63872292 -37508229 + MER53 DNA DNA 1 189 0 720 226 92 10 chr15 63872372 63872567 -37507954 - MIR SINE MIR -35 227 17 1986 92 20 52 chr15 63873463 63873768 -37506753 + AluSx SINE Alu 13 307 -5 1883 165 0 0 chr15 63873779 63874076 -37506445 + AluJo SINE Alu 1 297 -15 2261 91 0 0 chr15 63874374 63874672 -37505849 - AluSg SINE Alu -12 298 1 278 175 0 35 chr15 63875306 63875363 -37505158 - MIR SINE MIR -59 149 95 1472 192 56 13 chr15 63875366 63875668 -37504853 + MER58B DNA MER1_type 27 341 0 22 0 0 0 chr15 63876085 63876107 -37504414 + AT_rich Low_complexity Low_complexity 1 22 0 323 78 20 0 chr15 63877032 63877083 -37503438 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 208 203 78 16 chr15 63878413 63878477 -37502044 - MIR SINE MIR 0 262 195 190 256 8 116 chr15 63878747 63878876 -37501645 - MIR SINE MIR -73 135 21 384 59 0 0 chr15 63879166 63879217 -37501304 + (TG)n Simple_repeat Simple_repeat 1 51 0 585 315 84 0 chr15 63880065 63880278 -37500243 - MIR SINE MIR -11 251 21 293 264 22 11 chr15 63881671 63881762 -37498759 + MIR SINE MIR 104 195 -67 184 260 82 14 chr15 63882079 63882152 -37498369 + L2 LINE L2 3169 3246 -67 186 330 85 0 chr15 63882172 63882290 -37498231 - MIR3 SINE MIR -79 129 2 674 265 55 23 chr15 63882536 63882755 -37497766 + MIR SINE MIR 5 230 -32 434 301 153 44 chr15 63882783 63883149 -37497372 - L2 LINE L2 -38 3234 2829 247 173 77 0 chr15 63883198 63883250 -37497271 - L1ME3A LINE L1 -39 6131 6076 337 312 24 0 chr15 63883949 63884074 -37496447 + MIR3 SINE MIR 50 177 -31 1503 167 67 23 chr15 63884460 63884759 -37495762 + AluJo SINE Alu 1 312 0 373 341 54 68 chr15 63884831 63885200 -37495321 - L2 LINE L2 -82 3190 2827 323 0 48 0 chr15 63885340 63885382 -37495139 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 791 203 42 9 chr15 63885472 63885688 -37494833 - MIR SINE MIR -32 230 6 211 296 53 8 chr15 63887057 63887175 -37493346 + MIR SINE MIR 59 181 -27 217 327 133 0 chr15 63887711 63887824 -37492697 + MIR3 SINE MIR 33 160 -48 449 224 154 39 chr15 63887824 63887980 -37492541 - MER5B DNA MER1_type 0 178 5 2293 101 0 13 chr15 63888141 63888457 -37492064 - AluSx SINE Alu 0 312 1 1496 268 37 67 chr15 63888835 63888908 -37491613 - L1ME3A LINE L1 -5 6165 6091 2174 90 3 10 chr15 63888908 63889209 -37491312 - AluSp SINE Alu -14 299 1 1496 268 37 67 chr15 63889209 63889450 -37491071 - L1ME3A LINE L1 -79 6091 5844 2305 100 0 0 chr15 63889450 63889759 -37490762 - AluSg SINE Alu -1 309 1 1496 268 37 67 chr15 63889759 63890059 -37490462 - L1ME3A LINE L1 -326 5844 5568 231 295 114 20 chr15 63890073 63890222 -37490299 - MIR3 SINE MIR -25 183 21 671 281 46 14 chr15 63891738 63891955 -37488566 - MIR SINE MIR -19 243 20 191 237 53 53 chr15 63891905 63891981 -37488540 + MIR SINE MIR 45 120 -88 * 3922 186 80 53 chr15 63892097 63892211 -37488310 - L1MC4 LINE L1 -384 5782 5673 2650 13 0 0 chr15 63892211 63892509 -37488012 + AluYa5 SINE Alu 1 298 -13 3922 186 80 53 chr15 63892509 63892998 -37487523 - L1MC4 LINE L1 -493 5673 5199 1966 141 14 3 chr15 63892998 63893295 -37487226 - AluSx SINE Alu -12 300 1 3922 186 80 53 chr15 63893295 63893424 -37487097 - L1MC4 LINE L1 -967 5199 5075 1454 192 3 38 chr15 63893424 63893716 -37486805 - AluJo SINE Alu -30 282 1 3922 186 80 53 chr15 63893716 63894703 -37485818 - L1MC4 LINE L1 -1091 5075 4288 278 261 17 101 chr15 63894797 63894916 -37485605 + MIR3 SINE MIR 83 191 -17 548 201 168 39 chr15 63895553 63895732 -37484789 - MIR SINE MIR -12 250 49 969 141 6 34 chr15 63895761 63895938 -37484583 + L1MB4 LINE L1 6001 6172 -8 225 293 61 20 chr15 63896434 63896581 -37483940 + L1MC5 LINE L1 7709 7861 -100 940 217 138 71 chr15 63896583 63896989 -37483532 - LTR16A1 LTR ERVL -4 453 21 237 173 67 40 chr15 63897009 63897084 -37483437 + L1MC5 LINE L1 7855 7931 -30 265 314 7 114 chr15 63897193 63897245 -37483276 - MIR SINE MIR -125 137 81 795 144 25 99 chr15 63897245 63897447 -37483074 + MER53 DNA DNA 1 187 -2 265 314 7 114 chr15 63897447 63897534 -37482987 - MIR SINE MIR -181 81 13 463 253 23 103 chr15 63897585 63897719 -37482802 + MER5B DNA MER1_type 9 110 -68 2125 119 0 10 chr15 63897719 63898022 -37482499 - AluSc SINE Alu -9 300 1 463 253 23 103 chr15 63898022 63898086 -37482435 + MER5B DNA MER1_type 110 178 0 195 238 54 130 chr15 63898243 63898428 -37482093 + L2 LINE L2 2911 3081 -191 190 305 61 0 chr15 63898498 63898580 -37481941 + L2 LINE L2 3178 3264 -8 537 209 0 8 chr15 63899044 63899166 -37481355 - L1MB3 LINE L1 -30 6153 6032 184 275 101 0 chr15 63899235 63899304 -37481217 - L2 LINE L2 -60 3253 3178 2350 100 0 0 chr15 63900133 63900443 -37480078 - AluSg SINE Alu 0 310 1 633 261 151 11 chr15 63900734 63900870 -37479651 - L1ME4a LINE L1 -33 6088 5972 716 179 8 0 chr15 63900870 63900993 -37479528 - FLAM_A SINE Alu -9 124 1 633 261 151 11 chr15 63900993 63901128 -37479393 - L1ME4a LINE L1 -149 5972 5779 584 248 60 50 chr15 63901519 63901737 -37478784 + MIR SINE MIR 40 259 -3 23 33 0 0 chr15 63902167 63902197 -37478324 + AT_rich Low_complexity Low_complexity 1 30 0 255 211 70 0 chr15 63902494 63902551 -37477970 + MIR SINE MIR 89 149 -59 198 319 95 26 chr15 63902619 63902735 -37477786 - MER5A DNA MER1_type -5 184 61 346 236 40 0 chr15 63902748 63902838 -37477683 - L1MB7 LINE L1 -6 6168 6069 214 175 0 0 chr15 63904066 63904106 -37476415 + MIR SINE MIR 109 148 -60 223 250 153 0 chr15 63904429 63904501 -37476020 + MIR SINE MIR 120 202 -60 260 287 126 0 chr15 63904521 63904608 -37475913 - MIR SINE MIR -61 147 50 802 249 115 66 chr15 63904631 63905206 -37475315 - L1ME4a LINE L1 -1 6120 5518 194 311 34 59 chr15 63905341 63905460 -37475061 - L2 LINE L2 -21 3292 3177 195 341 68 0 chr15 63906663 63906751 -37473770 - MIR SINE MIR -66 142 49 498 232 36 7 chr15 63906765 63906903 -37473618 + MIR3 SINE MIR 61 202 -6 182 295 0 33 chr15 63908221 63908282 -37472239 - MIR SINE MIR -109 153 95 22 0 0 0 chr15 63909259 63909281 -37471240 + AT_rich Low_complexity Low_complexity 1 22 0 199 305 61 0 chr15 63909924 63910006 -37470515 + MIR3 SINE MIR 81 167 -41 1471 161 60 18 chr15 63910096 63910232 -37470289 + AluJb SINE Alu 1 130 -182 2106 122 7 0 chr15 63910232 63910535 -37469986 + AluSq SINE Alu 1 305 -8 1471 161 60 18 chr15 63910535 63910683 -37469838 + AluJb SINE Alu 130 297 -15 187 291 146 55 chr15 63911298 63911463 -37469058 + L2 LINE L2 3087 3266 -6 186 382 0 0 chr15 63911527 63911595 -37468926 - L2 LINE L2 -72 3200 3133 872 222 113 64 chr15 63911628 63912032 -37468489 - LTR16C LTR ERVL -13 478 4 212 224 60 30 chr15 63912776 63912843 -37467678 + L2 LINE L2 3173 3241 -31 * 429 257 59 15 chr15 63912840 63912976 -37467545 - MIR3 SINE MIR -15 193 52 1774 156 6 37 chr15 63913558 63913879 -37466642 + AluJo SINE Alu 1 311 -1 248 304 118 43 chr15 63914022 63914183 -37466338 - MIR SINE MIR -10 252 80 274 352 19 19 chr15 63914570 63914678 -37465843 - MIR SINE MIR -65 143 36 339 310 7 48 chr15 63915678 63915823 -37464698 - MIR SINE MIR -19 243 105 263 179 18 18 chr15 63916034 63916090 -37464431 + MIR SINE MIR 66 121 -87 28 48 0 0 chr15 63917288 63917330 -37463191 + AT_rich Low_complexity Low_complexity 1 42 0 275 291 118 9 chr15 63917731 63917841 -37462680 - MIR3 SINE MIR -21 187 66 345 321 8 37 chr15 63918033 63918167 -37462354 + MIR3 SINE MIR 9 138 -70 497 302 69 66 chr15 63919380 63919500 -37461021 + L1MEc LINE L1 2175 2293 -3922 2055 144 0 0 chr15 63919500 63919806 -37460715 + AluSx SINE Alu 1 306 -6 497 302 69 66 chr15 63919806 63920003 -37460518 + L1MEc LINE L1 2293 2441 -3774 851 219 39 0 chr15 63920010 63920188 -37460333 - MER58A DNA MER1_type -9 215 31 290 327 38 0 chr15 63920227 63920386 -37460135 + L1MEc LINE L1 2492 2656 -3559 210 71 0 0 chr15 63920386 63920414 -37460107 + (GA)n Simple_repeat Simple_repeat 1 28 0 401 88 0 0 chr15 63920439 63920496 -37460025 - L1PB3 LINE L1 0 6154 6098 207 0 0 0 chr15 63971383 63971406 -37409115 + (C)n Simple_repeat Simple_repeat 1 23 0 1041 144 10 31 chr15 63971796 63971990 -37408531 + AluSg/x SINE Alu 106 295 -17 329 194 62 0 chr15 63972035 63972120 -37408401 + L1MC4 LINE L1 7921 8042 0 185 250 0 0 chr15 63972279 63972319 -37408202 - MIR3 SINE MIR -25 183 144 * 198 299 215 0 chr15 63972291 63972398 -37408123 - L3b LINE CR1 -33 1550 1421 322 250 57 16 chr15 63972675 63972799 -37407722 - MER94 DNA DNA -2 132 4 1080 163 36 0 chr15 63973483 63973679 -37406842 - AluSx SINE Alu -109 203 1 2066 220 28 19 chr15 63973700 63974095 -37406426 - L1MDa LINE L1 -3457 3083 2693 380 179 12 0 chr15 63974095 63974179 -37406342 - L1MB8 LINE L1 0 6178 6094 2066 220 28 19 chr15 63974179 63974657 -37405864 - L1MDa LINE L1 -3847 2693 2205 1877 87 0 0 chr15 63974766 63975027 -37405494 + L1PA6 LINE L1 5907 6167 0 248 224 17 0 chr15 63975188 63975246 -37405275 + CT-rich Low_complexity Low_complexity 1 59 0 450 288 92 0 chr15 63976801 63976964 -37403557 + L1MC4a LINE L1 5756 5933 -1875 405 95 0 143 chr15 63977550 63977760 -37402761 + (TG)n Simple_repeat Simple_repeat 1 180 0 217 220 20 30 chr15 63978247 63978347 -37402174 + (CGCGG)n Simple_repeat Simple_repeat 3 101 0 843 316 37 43 chr15 63978660 63979034 -37401487 - L2 LINE L2 -11 3302 2931 688 270 11 6 chr15 63979120 63979294 -37401227 + MIR SINE MIR 22 196 -66 406 159 0 34 chr15 63979397 63979485 -37401036 - MLT1E LTR MaLR -494 99 15 312 273 20 50 chr15 63979836 63979935 -37400586 - MIR SINE MIR -86 122 27 298 213 33 16 chr15 63979997 63980058 -37400463 + MIR SINE MIR 88 149 -59 992 167 368 43 chr15 63980084 63980407 -37400114 + MER31B LTR ERV1 1 428 -38 1672 175 0 25 chr15 63980434 63980719 -37399802 + AluJo SINE Alu 5 282 -30 190 256 26 39 chr15 63982134 63982212 -37398309 + MIR3 SINE MIR 105 181 -27 439 222 137 24 chr15 63982265 63982477 -37398044 - LTR16C LTR ERVL -12 479 244 1123 123 6 28 chr15 63982577 63982756 -37397765 - AluJb SINE Alu -57 255 81 2568 218 40 5 chr15 63982756 63983076 -37397445 - L1 LINE L1 -875 5271 4963 243 0 0 0 chr15 63983076 63983103 -37397418 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2568 218 40 5 chr15 63983103 63983511 -37397010 - L1 LINE L1 -1183 4963 4487 1731 179 54 3 chr15 63983585 63983936 -37396585 + L1P LINE L1 11 379 -5767 493 235 139 52 chr15 63984763 63984817 -37395704 + MLT1J LTR MaLR 1 49 -462 1184 236 71 12 chr15 63984817 63984895 -37395626 + MER58B DNA MER1_type 1 73 -2347 1763 148 3 61 chr15 63984895 63985225 -37395296 - AluJo SINE Alu -1 311 1 1184 236 71 12 chr15 63985225 63985468 -37395053 + MER58B DNA MER1_type 73 341 0 493 235 139 52 chr15 63985468 63985809 -37394712 + MLT1J LTR MaLR 49 441 -70 204 326 120 0 chr15 63985838 63985930 -37394591 + L2 LINE L2 3133 3235 -37 194 289 108 0 chr15 63985929 63986012 -37394509 + MIR SINE MIR 53 144 -118 * 631 229 18 36 chr15 63986512 63986678 -37393843 + MIR3 SINE MIR 36 198 -10 9333 90 4 8 chr15 63987524 63988907 -37391614 + L1P LINE L1 955 2332 -3814 817 107 0 121 chr15 63989007 63989147 -37391374 - AluSp SINE Alu -188 125 3 1070 127 38 0 chr15 63989149 63989306 -37391215 - AluJb SINE Alu -14 298 136 600 212 66 98 chr15 63989307 63989429 -37391092 - L1MC5 LINE L1 -130 7831 7707 2426 88 3 0 chr15 63989429 63989734 -37390787 - AluSp SINE Alu -7 306 1 600 212 66 98 chr15 63989734 63989946 -37390575 - L1MC5 LINE L1 -254 7707 7508 878 213 102 28 chr15 63990026 63990280 -37390241 + MER93a LTR ERV1 116 388 -14 1544 184 71 0 chr15 63990280 63990563 -37389958 - AluJo SINE Alu -9 303 1 27 49 0 0 chr15 63990653 63990694 -37389827 + AT_rich Low_complexity Low_complexity 1 41 0 25 65 0 0 chr15 63990776 63990822 -37389699 + AT_rich Low_complexity Low_complexity 1 46 0 612 192 20 0 chr15 63990944 63991043 -37389478 - FLAM_A SINE Alu -41 101 1 1830 255 64 34 chr15 63991043 63991615 -37388906 - L1MC4a LINE L1 -1869 5939 5344 2153 94 7 42 chr15 63991615 63991923 -37388598 - AluY SINE Alu -14 297 1 1830 255 64 34 chr15 63991923 63991993 -37388528 - L1MC4a LINE L1 -2464 5344 5278 241 203 17 17 chr15 63992051 63992110 -37388411 + (TTTG)n Simple_repeat Simple_repeat 3 61 0 363 44 0 0 chr15 63992385 63992430 -37388091 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 417 240 87 24 chr15 63992595 63992803 -37387718 - L1ME4a LINE L1 -1 6120 5900 595 164 16 62 chr15 63992900 63993028 -37387493 + MIR SINE MIR 102 223 -39 216 150 0 0 chr15 63994819 63994859 -37385662 - MIR SINE MIR -81 127 88 465 256 80 0 chr15 63995000 63995125 -37385396 - MIR SINE MIR -37 225 91 334 197 173 38 chr15 63995274 63995381 -37385140 + MIR SINE MIR 70 188 -28 205 211 0 0 chr15 63995667 63995705 -37384816 + GA-rich Low_complexity Low_complexity 2 39 0 482 290 76 17 chr15 63996548 63996723 -37383798 - MIR3 SINE MIR -15 193 8 332 243 0 0 chr15 63997445 63997515 -37383006 + MIR3 SINE MIR 109 178 -30 503 294 39 11 chr15 63997894 63998074 -37382447 + MIR SINE MIR 48 232 -30 241 281 79 19 chr15 63998323 63998437 -37382084 - MIR SINE MIR -66 142 39 2723 239 37 40 chr15 63998785 63999673 -37380848 + L1MCb LINE L1 1 885 -5160 1731 167 23 7 chr15 63999673 63999972 -37380549 + AluSq SINE Alu 1 304 -9 198 0 0 0 chr15 64000384 64000406 -37380115 + (A)n Simple_repeat Simple_repeat 1 22 0 282 221 23 92 chr15 64000406 64000537 -37379984 + L1MC5 LINE L1 7813 7934 -27 421 184 0 13 chr15 64000625 64000701 -37379820 - FLAM_A SINE Alu -14 128 54 321 238 94 0 chr15 64000704 64000814 -37379707 + L1ME LINE L1 5561 5663 -503 2127 119 6 28 chr15 64000962 64001281 -37379240 - AluSx SINE Alu 0 312 1 2600 208 17 7 chr15 64001283 64001865 -37378656 + L1ME1 LINE L1 5574 6161 -5 347 229 38 6 chr15 64002389 64002546 -37377975 + (CCGCG)n Simple_repeat Simple_repeat 1 162 0 646 316 156 7 chr15 64002656 64003080 -37377441 - L2 LINE L2 -7 3306 2820 297 292 6 33 chr15 64003338 64003441 -37377080 + MIR SINE MIR 36 140 -68 1715 222 43 62 chr15 64003466 64003906 -37376615 + L1ME3 LINE L1 5595 6023 -139 2266 116 0 0 chr15 64003906 64004208 -37376313 - AluSx SINE Alu -10 302 1 1715 222 43 62 chr15 64004208 64004344 -37376177 + L1ME3 LINE L1 6023 6160 -2 207 140 0 0 chr15 64004867 64004897 -37375624 + MIR SINE MIR 117 152 -56 184 327 176 6 chr15 64005310 64005469 -37375052 + MIR3 SINE MIR 1 186 -22 291 319 67 17 chr15 64006201 64006320 -37374201 + MIR SINE MIR 58 182 -80 223 300 0 29 chr15 64006802 64006872 -37373649 + MIR SINE MIR 118 185 -77 1763 125 199 92 chr15 64006977 64007529 -37372992 + L1MC2 LINE L1 5725 6335 -9 897 245 4 46 chr15 64007660 64007901 -37372620 + MIR SINE MIR 22 252 -10 375 259 7 59 chr15 64008275 64008410 -37372111 - MIR3 SINE MIR -2 206 79 606 195 65 13 chr15 64008495 64008649 -37371872 - MIR SINE MIR -1 261 100 252 267 187 13 chr15 64008778 64008902 -37371619 + MLT1L LTR MaLR 96 252 -363 1859 67 51 8 chr15 64008902 64009156 -37371365 + AluY SINE Alu 39 303 -8 252 267 187 13 chr15 64009156 64009181 -37371340 + MLT1L LTR MaLR 252 271 -344 1282 217 31 0 chr15 64009187 64009473 -37371048 - AluJb SINE Alu -17 295 1 1824 113 17 10 chr15 64009478 64009770 -37370751 - AluY SINE Alu -17 294 1 255 51 0 77 chr15 64010273 64010312 -37370209 + MIR SINE MIR 62 97 -165 883 145 0 7 chr15 64010339 64010477 -37370044 - AluJo SINE Alu -175 137 1 223 288 45 0 chr15 64010481 64010547 -37369974 + MIR SINE MIR 124 192 -70 25 51 0 0 chr15 64010612 64010651 -37369870 + AT_rich Low_complexity Low_complexity 1 39 0 261 227 16 102 chr15 64011482 64011610 -37368911 - MLT1K LTR MaLR -17 571 455 594 290 98 5 chr15 64011923 64012147 -37368374 - MIR SINE MIR -2 260 16 2080 147 0 0 chr15 64012915 64013207 -37367314 - AluSx SINE Alu -7 305 14 416 272 24 29 chr15 64013276 64013429 -37367092 - MIR3 SINE MIR -72 136 2 307 262 37 120 chr15 64014177 64014368 -37366153 - MIR3 SINE MIR -10 198 24 946 202 16 0 chr15 64014380 64014563 -37365958 - MER5A DNA MER1_type 0 189 4 1773 145 3 132 chr15 64014614 64014831 -37365690 - MER1B DNA MER1_type -2373 337 190 1952 132 0 0 chr15 64014831 64015096 -37365425 + AluSx SINE Alu 3 267 -45 1773 145 3 132 chr15 64015096 64015265 -37365256 - MER1B DNA MER1_type -2520 190 1 193 353 39 81 chr15 64015921 64016113 -37364408 - L2 LINE L2 -1 3271 3091 1606 180 86 9 chr15 64016113 64016452 -37364069 + MLT1A1 LTR MaLR 1 365 0 193 353 39 81 chr15 64016452 64016517 -37364004 - L2 LINE L2 -181 3091 3025 908 256 108 31 chr15 64016799 64017186 -37363335 + LTR16A1 LTR ERVL 2 418 -39 236 241 76 13 chr15 64017835 64017914 -37362607 - MIR SINE MIR -72 190 107 233 220 154 121 chr15 64018738 64018843 -37361678 - MIR SINE MIR -10 252 137 2450 99 0 0 chr15 64018843 64019155 -37361366 - AluSx SINE Alu 0 312 1 233 220 154 121 chr15 64019155 64019231 -37361290 - MIR SINE MIR -125 137 65 190 327 37 37 chr15 64019499 64019606 -37360915 + MIR SINE MIR 17 123 -85 545 326 70 0 chr15 64021083 64021255 -37359266 - MIR SINE MIR -54 208 25 2684 112 37 2 chr15 64022035 64022463 -37358058 + LTR56 LTR ERV1 1 443 -2 222 200 27 40 chr15 64022496 64022549 -37357972 + (TA)n Simple_repeat Simple_repeat 1 54 -20 2179 101 0 30 chr15 64022549 64022845 -37357676 + AluSc SINE Alu 1 287 -22 222 200 27 40 chr15 64022845 64022866 -37357655 + (TA)n Simple_repeat Simple_repeat 54 74 0 3154 102 7 0 chr15 64022916 64023357 -37357164 + MER41B LTR ERV1 1 444 -191 914 83 13 25 chr15 64023575 64023732 -37356789 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 2254 86 0 7 chr15 64023732 64024012 -37356509 - AluSg SINE Alu -32 278 1 241 275 37 32 chr15 64024265 64024454 -37356067 + L1MEd LINE L1 709 898 -5221 317 372 34 46 chr15 64024560 64024885 -37355636 + L1MDa LINE L1 27 347 -6193 236 276 112 15 chr15 64025227 64025361 -37355160 + L1MDa LINE L1 775 921 -5609 296 302 9 17 chr15 64025394 64025510 -37355011 + L1MDa LINE L1 917 1031 -5512 2806 228 97 19 chr15 64025587 64026616 -37353905 + L1MDa LINE L1 1017 2125 -4415 272 261 14 0 chr15 64027238 64027307 -37353214 - MIR SINE MIR -58 150 81 216 0 0 0 chr15 64028333 64028357 -37352164 + (T)n Simple_repeat Simple_repeat 1 24 0 377 289 7 44 chr15 64029826 64029961 -37350560 + LTR16B LTR ERVL 1 130 -334 605 223 7 7 chr15 64029973 64030112 -37350409 + LTR16B LTR ERVL 322 460 -4 642 262 59 14 chr15 64030337 64030558 -37349963 + MER113 DNA MER1_type? 233 463 -58 354 277 12 0 chr15 64030663 64030746 -37349775 + MIR SINE MIR 67 150 -112 1828 64 0 0 chr15 64030766 64030984 -37349537 - AluSg/x SINE Alu -13 297 80 2620 195 26 13 chr15 64030985 64031524 -37348997 + MER82 DNA MER2_type 1 546 -107 3370 238 63 26 chr15 64031636 64032837 -37347684 + L1MDa LINE L1 3116 4361 -2179 579 261 43 57 chr15 64033117 64033397 -37347124 + MLT1L LTR MaLR 330 605 -10 345 369 61 47 chr15 64033524 64033868 -37346653 + L2 LINE L2 2924 3272 0 398 208 208 47 chr15 64033937 64034086 -37346435 - MIR SINE MIR -2 260 88 440 272 144 6 chr15 64034464 64034644 -37345877 + MIR SINE MIR 47 251 -11 427 282 27 0 chr15 64035393 64035503 -37345018 + MIR3 SINE MIR 70 182 -26 1001 228 52 58 chr15 64036217 64036425 -37344096 - L2 LINE L2 -1 3312 3105 2204 139 0 0 chr15 64036425 64036735 -37343786 + AluSx SINE Alu 1 310 -2 1001 228 52 58 chr15 64036735 64036851 -37343670 - L2 LINE L2 -208 3105 2990 247 294 24 0 chr15 64036896 64036981 -37343540 - MLT1L LTR MaLR -363 252 166 295 346 10 0 chr15 64037115 64037216 -37343305 + MIR SINE MIR 19 120 -88 1374 199 108 39 chr15 64037399 64037786 -37342735 + MER96B DNA MER1_type 1 414 -3 612 282 41 9 chr15 64038545 64038759 -37341762 + MIR SINE MIR 27 248 -14 340 341 38 23 chr15 64038815 64038947 -37341574 + MIR SINE MIR 16 149 -59 726 259 37 103 chr15 64038949 64039490 -37341031 + MLT1J LTR MaLR 5 509 -2 256 224 0 17 chr15 64039871 64039929 -37340592 + MIR SINE MIR 82 138 -70 5317 78 19 3 chr15 64040076 64040756 -37339765 + LTR8 LTR ERV1 1 691 0 4721 87 24 3 chr15 64040756 64041436 -37339085 + HUERS-P1 LTR ERV1 1 694 -5569 2169 104 6 25 chr15 64042093 64042410 -37338111 - AluY SINE Alu 0 311 1 342 313 54 9 chr15 64042413 64042525 -37337996 - MIR SINE MIR -58 150 34 4771 64 19 0 chr15 64042530 64043154 -37337367 - LTR8 LTR ERV1 0 691 56 38967 66 20 20 chr15 64043175 64044776 -37335745 - HUERS-P1 LTR ERV1 0 6263 4663 2229 112 3 0 chr15 64044776 64045061 -37335460 + AluSq SINE Alu 1 286 -27 38967 66 20 20 chr15 64045061 64045854 -37334667 - HUERS-P1 LTR ERV1 -1600 4663 3871 2287 94 0 0 chr15 64045854 64046142 -37334379 - AluY SINE Alu -19 292 5 38967 66 20 20 chr15 64046142 64047022 -37333499 - HUERS-P1 LTR ERV1 -2392 3871 2992 329 0 24 0 chr15 64047022 64047063 -37333458 + (CA)n Simple_repeat Simple_repeat 1 42 0 38967 66 20 20 chr15 64047063 64049282 -37331239 - HUERS-P1 LTR ERV1 -3270 2993 768 2006 118 11 0 chr15 64049409 64049688 -37330833 - AluSg SINE Alu -28 282 1 225 94 0 0 chr15 64050193 64050225 -37330296 + (T)n Simple_repeat Simple_repeat 1 32 0 2559 58 3 0 chr15 64050225 64050550 -37329971 - LTR17 LTR ERV1 -454 326 1 2237 69 3 0 chr15 64050550 64050840 -37329681 - HERV17 LTR ERV1 0 8626 8336 260 103 0 0 chr15 64050831 64050870 -37329651 - HERV17 LTR ERV1 -1078 7548 7510 * 42018 49 18 6 chr15 64050863 64051751 -37328770 - HERV17 LTR ERV1 -2607 6019 5143 2447 87 0 0 chr15 64051751 64052050 -37328471 + AluY SINE Alu 1 299 -12 42018 49 18 6 chr15 64052050 64057124 -37323397 - HERV17 LTR ERV1 -3483 5143 1 3894 65 46 4 chr15 64057124 64057628 -37322893 - LTR17 LTR ERV1 0 780 256 3992 251 62 25 chr15 64057784 64058914 -37321607 + ERVL LTR ERVL 3734 4905 -859 368 305 73 17 chr15 64058922 64059099 -37321422 + L1ME4a LINE L1 5347 5533 -588 268 267 23 12 chr15 64059194 64059280 -37321241 + MIR SINE MIR 15 101 -161 421 271 63 80 chr15 64059345 64059427 -37321094 + L1ME4a LINE L1 5654 5736 -385 1937 155 13 26 chr15 64059427 64059731 -37320790 + AluSx SINE Alu 1 300 -12 421 271 63 80 chr15 64059731 64059811 -37320710 + L1ME4a LINE L1 5736 5816 -305 2265 116 0 3 chr15 64059811 64060113 -37320408 + AluSx SINE Alu 1 301 -11 421 271 63 80 chr15 64060113 64060425 -37320096 + L1ME4a LINE L1 5816 6121 0 1757 114 130 39 chr15 64060460 64060612 -37319909 - L1PA16 LINE L1 -11 6155 6018 2287 84 35 0 chr15 64060612 64060899 -37319622 - AluSg SINE Alu -13 297 1 1757 114 130 39 chr15 64060899 64061054 -37319467 - L1PA16 LINE L1 -148 6018 5820 726 143 0 0 chr15 64061055 64061160 -37319361 - AluSg/x SINE Alu -9 301 197 4856 172 23 1 chr15 64061162 64062660 -37317861 - L1PA16 LINE L1 -362 5804 4279 408 315 160 27 chr15 64064350 64064835 -37315686 + L2 LINE L2 2499 3060 -253 1963 147 36 73 chr15 64065062 64065511 -37315010 - MSTB1 LTR MaLR 0 432 1 597 249 40 6 chr15 64065592 64065769 -37314752 + MIR SINE MIR 47 229 -33 275 167 0 0 chr15 64066467 64066515 -37314006 + MIR SINE MIR 110 157 -105 228 86 0 0 chr15 64066560 64066595 -37313926 + (CA)n Simple_repeat Simple_repeat 1 35 0 785 254 132 49 chr15 64066966 64067375 -37313146 + MLT1J1 LTR MaLR 4 446 0 187 228 53 18 chr15 64067793 64067850 -37312671 - MIR3 SINE MIR -51 157 99 417 278 28 7 chr15 64068488 64068632 -37311889 - MLT1K LTR MaLR -44 544 398 671 204 44 22 chr15 64068643 64068824 -37311697 + MER53 DNA DNA 1 185 -4 372 43 0 0 chr15 64068849 64068895 -37311626 + (TC)n Simple_repeat Simple_repeat 1 46 0 692 103 51 26 chr15 64069041 64069158 -37311363 + L1M1 LINE L1 14 133 -7432 * 17780 131 14 19 chr15 64069155 64072156 -37308365 + L1M1 LINE L1 1099 4113 -3452 2449 73 0 3 chr15 64072156 64072459 -37308062 + AluY SINE Alu 3 304 -7 17780 131 14 19 chr15 64072459 64072989 -37307532 + L1M1 LINE L1 4113 4644 -2921 207 0 0 0 chr15 64072989 64073012 -37307509 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2230 101 0 0 chr15 64073015 64073292 -37307229 - AluSc SINE Alu -32 277 1 17780 131 14 19 chr15 64073292 64073320 -37307201 + L1M1 LINE L1 4614 4641 -2924 255 294 140 15 chr15 64073556 64073692 -37306829 - L3 LINE CR1 -108 1469 1317 300 303 115 19 chr15 64073742 64073950 -37306571 - MIR SINE MIR -19 243 16 199 233 23 0 chr15 64074208 64074251 -37306270 - L2 LINE L2 -25 3247 3204 649 160 8 8 chr15 64074297 64074428 -37306093 + GA-rich Low_complexity Low_complexity 4 134 0 951 118 11 96 chr15 64074430 64074608 -37305913 + FRAM SINE Alu 1 163 -13 348 241 0 0 chr15 64074714 64074872 -37305649 + (TA)n Simple_repeat Simple_repeat 1 158 0 402 252 53 66 chr15 64075257 64075483 -37305038 + L1ME4a LINE L1 5319 5541 -2267 477 198 0 0 chr15 64075484 64075565 -37304956 - MER45A DNA AcHobo -1 177 97 2204 112 16 16 chr15 64075567 64075905 -37304616 + AluJb SINE Alu 1 338 0 303 273 190 49 chr15 64076038 64076485 -37304036 + L2 LINE L2 1562 2071 -1243 606 314 130 51 chr15 64076491 64077475 -37303046 + L2 LINE L2 2213 3272 0 349 300 101 70 chr15 64077475 64077802 -37302719 + L1ME4a LINE L1 5567 5903 -218 186 43 0 0 chr15 64078150 64078173 -37302348 + (TA)n Simple_repeat Simple_repeat 1 23 0 1950 222 47 22 chr15 64078194 64079020 -37301501 - L1ME LINE L1 -466 5700 4846 1333 201 38 15 chr15 64078996 64079335 -37301186 + L1MB8 LINE L1 4855 5201 -945 * 1777 94 8 0 chr15 64079335 64079580 -37300941 + L1PA13 LINE L1 5717 5963 -200 2059 134 3 0 chr15 64079580 64079885 -37300636 + L1PA13 LINE L1 5843 6157 -6 24 32 0 0 chr15 64079885 64079916 -37300605 + AT_rich Low_complexity Low_complexity 1 31 0 4511 153 32 53 chr15 64079916 64080922 -37299599 + L1MB8 LINE L1 5189 6178 0 433 146 24 12 chr15 64080911 64080993 -37299528 - L1ME LINE L1 -1281 4865 4783 * 1303 227 108 5 chr15 64082181 64082569 -37297952 - L1ME LINE L1 -1325 4821 4394 297 281 42 10 chr15 64082568 64082664 -37297857 + MLT1-int LTR MaLR 796 894 -477 * 22 56 0 0 chr15 64082734 64082770 -37297751 + AT_rich Low_complexity Low_complexity 1 36 0 1450 113 61 0 chr15 64082844 64083057 -37297464 - AluSg/x SINE Alu -2 310 85 1180 213 35 0 chr15 64083083 64083337 -37297184 - L1ME LINE L1 -1841 4305 4043 1762 214 103 51 chr15 64083340 64083853 -37296668 + MLT1F LTR MaLR 1 540 -2 379 287 10 0 chr15 64083855 64083956 -37296565 + MLT1F-int LTR MaLR 1 102 -1269 * 513 231 28 119 chr15 64083929 64084215 -37296306 + MLT1F-int LTR MaLR 259 518 -853 198 0 0 0 chr15 64084215 64084237 -37296284 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2034 159 0 0 chr15 64084246 64084542 -37295979 + AluJb SINE Alu 1 296 -16 641 244 122 5 chr15 64084896 64085097 -37295424 + MIR SINE MIR 17 233 -29 2100 134 0 3 chr15 64085418 64085725 -37294796 - AluSx SINE Alu -6 306 1 183 188 0 0 chr15 64086003 64086035 -37294486 - MIR SINE MIR -12 250 219 2388 82 3 0 chr15 64086083 64086375 -37294146 + AluSg SINE Alu 3 295 -15 862 219 6 0 chr15 64086399 64086577 -37293944 - MIR SINE MIR -61 201 23 864 163 0 0 chr15 64087438 64087573 -37292948 - AluJo SINE Alu -177 135 1 368 329 44 22 chr15 64088413 64088638 -37291883 + MIR SINE MIR 19 248 -14 2269 117 7 0 chr15 64088646 64088955 -37291566 + AluSp SINE Alu 1 311 -2 237 65 0 0 chr15 64089630 64089661 -37290860 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2136 122 3 0 chr15 64089677 64089965 -37290556 - AluSq SINE Alu -24 289 1 329 253 129 17 chr15 64090104 64090282 -37290239 + L1MC/D LINE L1 4724 4921 -1225 239 260 78 57 chr15 64090612 64090804 -37289717 + L1MC/D LINE L1 5326 5521 -2287 501 258 239 0 chr15 64090809 64091018 -37289503 + MIR SINE MIR 4 262 0 424 301 63 10 chr15 64091115 64091321 -37289200 + MIR SINE MIR 38 254 -8 2124 129 0 16 chr15 64091528 64091845 -37288676 - AluSx SINE Alu 0 312 1 224 186 0 0 chr15 64092117 64092160 -37288361 + L2 LINE L2 3266 3308 -5 225 302 73 0 chr15 64092613 64092709 -37287812 + MIR3 SINE MIR 100 202 -6 232 250 116 45 chr15 64092741 64092853 -37287668 + MIR SINE MIR 2 121 -141 314 248 152 9 chr15 64092858 64092963 -37287558 - L2 LINE L2 -1 3271 3152 307 132 38 0 chr15 64092968 64093021 -37287500 - MLT1K LTR MaLR -10 578 524 1795 147 22 32 chr15 64093238 64093550 -37286971 + AluSx SINE Alu 1 309 -3 1940 130 0 0 chr15 64093550 64093818 -37286703 + AluSx SINE Alu 27 296 -16 283 269 59 34 chr15 64093835 64093954 -37286567 - MLT1K LTR MaLR -343 245 124 258 213 27 27 chr15 64093999 64094074 -37286447 + MIR SINE MIR 159 233 -29 487 175 110 115 chr15 64095191 64095391 -37285130 + MIR SINE MIR 53 251 -11 1391 193 88 68 chr15 64095590 64095869 -37284652 - MLT1C LTR MaLR -2 465 193 1832 144 22 11 chr15 64095869 64096146 -37284375 - AluJo SINE Alu -32 280 1 1391 193 88 68 chr15 64096146 64096157 -37284364 - MLT1C LTR MaLR -274 193 184 2525 67 3 0 chr15 64096157 64096456 -37284065 - AluSp SINE Alu -13 300 1 1391 193 88 68 chr15 64096456 64096620 -37283901 - MLT1C LTR MaLR -283 184 1 272 214 197 26 chr15 64096926 64097043 -37283478 + MIR3 SINE MIR 2 138 -70 2226 128 7 0 chr15 64097097 64097457 -37283064 + AluSg SINE Alu 1 362 0 1988 88 0 4 chr15 64097947 64098221 -37282300 + AluSx SINE Alu 34 306 0 1363 111 0 0 chr15 64098221 64098401 -37282120 + AluSp SINE Alu 125 304 -9 1920 161 0 31 chr15 64098571 64098893 -37281628 + AluJo SINE Alu 1 312 0 217 256 184 29 chr15 64098919 64099126 -37281395 + L2 LINE L2 1719 1957 -1357 2347 93 0 3 chr15 64099739 64100039 -37280482 + AluSx SINE Alu 1 299 -13 376 293 108 27 chr15 64100531 64100552 -37279969 + MIR SINE MIR 9 27 -235 967 182 53 19 chr15 64100552 64100761 -37279760 + MER20 DNA MER1_type 3 218 -1 376 293 108 27 chr15 64100761 64100961 -37279560 + MIR SINE MIR 27 248 -14 5415 21 0 7 chr15 64101500 64102116 -37278405 - L1PA4 LINE L1 0 6155 5544 2050 90 31 17 chr15 64102949 64103257 -37277264 + AluSx SINE Alu 1 312 0 1312 248 91 14 chr15 64103415 64103985 -37276536 - L2 LINE L2 -1 3312 2684 305 256 22 11 chr15 64103998 64104088 -37276433 - MIR SINE MIR -108 154 64 2228 75 32 0 chr15 64104104 64104386 -37276135 - AluSc SINE Alu -18 291 1 251 266 51 25 chr15 64105777 64105856 -37274665 - L2 LINE L2 -1 3271 3191 276 270 95 0 chr15 64105936 64106010 -37274511 + MIR SINE MIR 112 192 -70 204 336 64 16 chr15 64106149 64106274 -37274247 - L2 LINE L2 -14 3299 3169 645 282 13 23 chr15 64106289 64106516 -37274005 + MIR SINE MIR 9 234 -28 197 156 0 22 chr15 64106549 64106594 -37273927 + (CACCAT)n Simple_repeat Simple_repeat 2 45 0 180 308 39 54 chr15 64106634 64106764 -37273757 - L2 LINE L2 -210 3062 2935 1012 244 31 0 chr15 64107157 64107382 -37273139 - MIR SINE MIR 0 262 31 2097 128 7 3 chr15 64107388 64107685 -37272836 - AluSx SINE Alu -14 298 1 217 385 7 7 chr15 64107775 64107918 -37272603 + L2 LINE L2 2839 2981 -291 574 253 104 36 chr15 64107930 64108004 -37272517 + L1ME4a LINE L1 5837 5905 -216 2220 138 0 0 chr15 64108004 64108316 -37272205 + AluSx SINE Alu 1 312 0 574 253 104 36 chr15 64108316 64108490 -37272031 + L1ME4a LINE L1 5905 6102 -19 22 56 0 0 chr15 64108518 64108554 -37271967 + AT_rich Low_complexity Low_complexity 1 36 0 2019 88 4 0 chr15 64108579 64108854 -37271667 + AluY SINE Alu 33 308 0 388 181 0 0 chr15 64108859 64108931 -37271590 - L1MB3 LINE L1 -36 6147 6076 370 232 80 40 chr15 64109121 64109246 -37271275 + MIR SINE MIR 11 140 -122 4280 122 61 8 chr15 64109256 64109927 -37270594 + L1PA15 LINE L1 5459 6165 0 456 271 138 6 chr15 64110553 64110734 -37269787 - MIR SINE MIR -11 251 47 192 405 27 0 chr15 64111130 64111241 -37269280 - L3 LINE CR1 -513 1064 951 971 348 119 22 chr15 64111272 64111338 -37269183 - L3 LINE CR1 -605 972 914 2070 66 0 0 chr15 64111338 64111581 -37268940 - AluY SINE Alu -9 302 60 971 348 119 22 chr15 64111581 64112146 -37268375 - L3 LINE CR1 -663 914 280 298 88 0 105 chr15 64112610 64112658 -37267863 - AluSg1 SINE Alu 0 300 260 1735 90 0 0 chr15 64112658 64112870 -37267651 - AluSg1 SINE Alu -97 212 1 1230 146 23 104 chr15 64113590 64113683 -37266838 - L1MB3 LINE L1 -2 6181 6082 2348 109 3 10 chr15 64113683 64113995 -37266526 - AluSg SINE Alu 0 310 1 1230 146 23 104 chr15 64113995 64114209 -37266312 - L1MB3 LINE L1 -101 6082 5899 1331 155 0 19 chr15 64114210 64114423 -37266098 - AluJo SINE Alu -19 293 85 2079 152 3 0 chr15 64114423 64114766 -37265755 - L1MB3 LINE L1 -263 5908 5565 382 358 53 22 chr15 64115297 64115523 -37264998 + MIR SINE MIR 1 233 -29 503 301 59 5 chr15 64117101 64117287 -37263234 + MER91A DNA MER1_type 1 196 0 249 297 18 54 chr15 64117596 64117707 -37262814 + L2 LINE L2 3161 3267 -5 491 280 32 37 chr15 64118720 64118909 -37261612 + MIR SINE MIR 20 207 -55 389 216 68 0 chr15 64119272 64119360 -37261161 + MIR SINE MIR 42 135 -73 483 221 29 10 chr15 64120949 64121053 -37259468 + MIR SINE MIR 97 202 -60 273 252 38 35 chr15 64121199 64121379 -37259142 - MIR SINE MIR -7 255 14 240 35 0 0 chr15 64121460 64121489 -37259032 + (CA)n Simple_repeat Simple_repeat 1 29 0 282 248 99 0 chr15 64121500 64121601 -37258920 + MER112 DNA MER1_type 96 206 -54 209 337 53 0 chr15 64121678 64121773 -37258748 - MIR SINE MIR -70 192 93 328 228 26 0 chr15 64121883 64121967 -37258554 + MIR SINE MIR 60 143 -65 192 152 0 0 chr15 64122137 64122170 -37258351 + CT-rich Low_complexity Low_complexity 1 33 0 2312 95 3 3 chr15 64122170 64122466 -37258055 - AluSg SINE Alu -14 296 1 25 51 0 0 chr15 64122553 64122592 -37257929 + AT_rich Low_complexity Low_complexity 1 39 0 230 241 103 46 chr15 64122701 64122788 -37257733 + MIR SINE MIR 101 192 -70 247 241 128 28 chr15 64122828 64122933 -37257588 - MER112 DNA MER1_type -6 254 130 2251 125 0 3 chr15 64122933 64123236 -37257285 + AluSx SINE Alu 1 302 -10 247 241 128 28 chr15 64123236 64123271 -37257250 - MER112 DNA MER1_type -130 130 100 21 57 0 0 chr15 64123308 64123343 -37257178 + AT_rich Low_complexity Low_complexity 1 35 0 839 195 7 13 chr15 64123469 64123623 -37256898 - FRAM SINE Alu -23 153 1 222 304 128 32 chr15 64124216 64124341 -37256180 + L2 LINE L2 2617 2753 -561 320 309 67 51 chr15 64125093 64125468 -37255053 + L1MEd LINE L1 254 634 -5738 777 236 123 82 chr15 64125554 64126277 -37254244 + L1MEd LINE L1 749 1501 -4871 330 251 84 70 chr15 64126450 64126749 -37253772 + L1MEd LINE L1 1614 1805 -4577 331 304 73 52 chr15 64126887 64127173 -37253348 + L1MEd LINE L1 2058 2349 -4035 226 241 0 25 chr15 64127179 64127258 -37253263 + L1MEd LINE L1 2351 2427 -3955 640 179 101 0 chr15 64127261 64127434 -37253087 - MLT1F1 LTR MaLR -191 351 152 242 254 51 0 chr15 64127443 64127502 -37253019 + MIR3 SINE MIR 102 163 -45 431 268 71 0 chr15 64127841 64127953 -37252568 + MIR SINE MIR 28 147 -115 368 321 68 72 chr15 64127995 64128202 -37252319 - L2 LINE L2 -10 3262 3056 624 211 161 0 chr15 64128202 64128363 -37252158 + MER5A DNA MER1_type 2 188 -1 368 321 68 72 chr15 64128363 64128693 -37251828 - L2 LINE L2 -216 3056 2720 1177 217 124 21 chr15 64130025 64130436 -37250085 + MLT1C LTR MaLR 1 618 -8 191 32 65 0 chr15 64130965 64130996 -37249525 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1782 167 0 21 chr15 64130998 64131285 -37249236 - AluJo SINE Alu -31 281 1 266 279 53 38 chr15 64131286 64131421 -37249100 - MIR SINE MIR -61 147 30 1151 213 343 5 chr15 64131701 64132284 -37248237 + LTR50 LTR ERVL 1 780 -15 749 268 92 32 chr15 64132283 64132663 -37247858 - MLT1L LTR MaLR -179 436 34 * 330 354 65 25 chr15 64132704 64133029 -37247492 - L2 LINE L2 -118 3154 2817 3861 152 54 7 chr15 64133325 64134029 -37246492 - L1MB3 LINE L1 0 6183 5447 199 314 35 12 chr15 64134434 64134520 -37246001 + L2 LINE L2 3184 3271 -1 186 143 0 0 chr15 64134547 64134575 -37245946 - MIR SINE MIR -117 145 118 911 199 0 12 chr15 64135362 64135528 -37244993 + FRAM SINE Alu 1 163 -13 244 305 25 85 chr15 64135652 64135749 -37244772 + MIR SINE MIR 17 107 -101 2299 125 39 25 chr15 64135749 64136108 -37244413 + THE1B LTR MaLR 1 364 0 244 305 25 85 chr15 64136108 64136128 -37244393 + MIR SINE MIR 107 127 -81 504 184 83 0 chr15 64136168 64136277 -37244244 - MER20 DNA MER1_type -4 215 98 575 310 84 13 chr15 64136501 64136740 -37243781 - MIR SINE MIR 0 262 7 359 279 132 8 chr15 64136804 64136933 -37243588 - MIR3 SINE MIR -19 189 45 3467 176 107 7 chr15 64137087 64137799 -37242722 + LTR48 LTR ERV1 1 783 -4 348 188 0 0 chr15 64137927 64137996 -37242525 + GA-rich Low_complexity Low_complexity 2 70 0 724 170 11 22 chr15 64138028 64138210 -37242311 + GA-rich Low_complexity Low_complexity 1 180 0 985 208 87 27 chr15 64138213 64138545 -37241976 + LTR37A LTR ERV1 51 402 -24 2313 116 8 14 chr15 64138546 64138907 -37241614 - THE1C LTR MaLR -2 373 15 697 211 23 0 chr15 64138945 64139073 -37241448 + FLAM_A SINE Alu 1 131 -2 328 159 0 16 chr15 64139228 64139291 -37241230 - LTR37A LTR ERV1 -80 346 285 408 299 10 81 chr15 64139449 64139646 -37240875 + MIR SINE MIR 28 210 -52 321 281 24 84 chr15 64140291 64140337 -37240184 + MER5B DNA MER1_type 19 66 -112 2320 120 3 0 chr15 64140337 64140645 -37239876 + AluSx SINE Alu 1 309 -3 321 281 24 84 chr15 64140645 64140765 -37239756 + MER5B DNA MER1_type 66 175 -3 613 294 0 0 chr15 64141680 64141860 -37238661 + (CA)n Simple_repeat Simple_repeat 1 180 0 396 266 0 0 chr15 64141900 64142069 -37238452 + (CA)n Simple_repeat Simple_repeat 1 169 0 333 253 0 0 chr15 64142082 64142244 -37238277 + (CA)n Simple_repeat Simple_repeat 1 162 0 931 254 42 100 chr15 64142429 64142648 -37237873 - MER21B LTR ERV1 -167 696 466 1343 199 18 11 chr15 64142648 64142925 -37237596 - L1MB2 LINE L1 0 6171 5893 931 254 42 100 chr15 64142925 64143296 -37237225 - MER21B LTR ERV1 -397 466 140 320 177 104 31 chr15 64143464 64143570 -37236951 + MLT1C LTR MaLR 8 126 -341 210 274 0 0 chr15 64143619 64143721 -37236800 + (CA)n Simple_repeat Simple_repeat 1 102 0 930 212 67 26 chr15 64143728 64143997 -37236524 + MLT1C LTR MaLR 188 467 0 371 273 61 0 chr15 64144225 64144324 -37236197 + MLT1L LTR MaLR 138 242 -373 567 248 135 5 chr15 64144396 64144618 -37235903 + MLT1L LTR MaLR 359 609 -6 408 276 125 26 chr15 64144618 64144850 -37235671 + MER112 DNA MER1_type 1 255 -1 267 103 0 0 chr15 64144855 64144894 -37235627 + (A)n Simple_repeat Simple_repeat 1 39 0 322 216 40 0 chr15 64145361 64145435 -37235086 + MIR SINE MIR 65 141 -67 264 167 0 0 chr15 64146005 64146053 -37234468 + (TCCA)n Simple_repeat Simple_repeat 2 49 0 1095 237 23 0 chr15 64146145 64146364 -37234157 - MER58A DNA MER1_type 0 224 1 2093 156 31 17 chr15 64146689 64147049 -37233472 + MLT1A1 LTR MaLR 1 365 0 906 247 71 53 chr15 64147639 64148019 -37232502 + MLT1J LTR MaLR 30 416 -95 239 258 194 8 chr15 64148103 64148227 -37232294 - MER103 DNA DNA 0 166 20 365 219 185 34 chr15 64148305 64148424 -37232097 + MIR3 SINE MIR 19 155 -53 311 328 32 0 chr15 64148539 64148664 -37231857 + MIR SINE MIR 36 164 -98 376 162 14 218 chr15 64149078 64149220 -37231301 + MIR3 SINE MIR 80 160 -48 722 319 72 8 chr15 64149374 64149609 -37230912 - MIR SINE MIR -11 251 2 351 308 52 76 chr15 64149741 64149991 -37230530 + L2 LINE L2 3029 3272 0 374 345 67 5 chr15 64150821 64151015 -37229506 - L2 LINE L2 -755 2559 2354 1850 144 0 17 chr15 64151208 64151500 -37229021 + AluJb SINE Alu 21 307 -5 1027 171 12 0 chr15 64151509 64151673 -37228848 + FRAM SINE Alu 1 166 0 2138 117 10 0 chr15 64151677 64151967 -37228554 + AluSg SINE Alu 3 295 -15 217 289 132 79 chr15 64151980 64152170 -37228351 - MIR SINE MIR -14 248 49 182 125 0 25 chr15 64152669 64152709 -37227812 + (TCCC)n Simple_repeat Simple_repeat 3 41 0 332 272 254 0 chr15 64153250 64153463 -37227058 + MLT2E LTR ERVL 39 305 -323 362 307 31 8 chr15 64153618 64153745 -37226776 + MIR SINE MIR 55 184 -78 2547 81 3 0 chr15 64154128 64154437 -37226084 - AluSx SINE Alu -2 310 1 461 264 23 0 chr15 64155441 64155570 -37224951 + MER94 DNA DNA 1 132 -2 198 299 215 0 chr15 64155851 64155958 -37224563 + L3b LINE CR1 1421 1550 -33 185 250 0 0 chr15 64155930 64155970 -37224551 + MIR3 SINE MIR 144 183 -25 * 1301 250 92 25 chr15 64156129 64156259 -37224262 - L1MC4 LINE L1 0 8042 7922 2359 98 0 0 chr15 64156259 64156554 -37223967 - AluSx SINE Alu -17 295 1 1301 250 92 25 chr15 64156554 64157103 -37223418 - L1MC4 LINE L1 -120 7922 7254 1275 176 82 0 chr15 64157105 64157361 -37223160 - L1MC4 LINE L1 -953 7089 6813 944 251 153 70 chr15 64157365 64157850 -37222671 + MLT-int LTR MaLR 711 1235 -500 2315 211 139 11 chr15 64158007 64158562 -37221959 + MSTD-int LTR MaLR 1110 1735 0 1896 200 13 23 chr15 64158567 64158888 -37221633 + MSTD LTR MaLR 6 324 -72 2420 63 0 17 chr15 64158888 64159189 -37221332 - AluY SINE Alu -15 296 1 1896 200 13 23 chr15 64159189 64159262 -37221259 + MSTD LTR MaLR 324 396 0 2445 264 77 31 chr15 64159385 64159428 -37221093 - HAL1 LINE L1 -1471 1036 996 2435 159 2 0 chr15 64159428 64159830 -37220691 + MER57A LTR ERV1 1 403 0 2445 264 77 31 chr15 64159830 64160766 -37219755 - HAL1 LINE L1 -1511 996 12 5675 144 30 7 chr15 64160809 64162216 -37218305 - L1MA5 LINE L1 0 6300 4864 221 75 25 0 chr15 64162362 64162402 -37218119 + L2 LINE L2 3014 3054 -218 788 282 92 34 chr15 64162767 64163061 -37217460 + MLT1I LTR MaLR 99 409 0 264 258 0 100 chr15 64163626 64163746 -37216775 + MIR SINE MIR 111 218 -44 523 215 37 44 chr15 64163820 64163955 -37216566 - MIR SINE MIR -106 156 23 516 226 16 16 chr15 64164677 64164801 -37215720 - MER117 DNA MER1_type -35 162 39 1549 88 0 0 chr15 64165100 64165317 -37215204 + L1PA8 LINE L1 5956 6172 0 180 185 0 0 chr15 64165509 64165563 -37214958 + L2 LINE L2 2920 2973 -299 288 267 89 7 chr15 64166191 64166337 -37214184 + L2 LINE L2 2902 3059 -213 322 215 51 0 chr15 64166926 64167005 -37213516 + MIR SINE MIR 47 129 -133 2086 151 0 0 chr15 64167008 64167313 -37213208 - AluJb SINE Alu -7 305 1 2222 113 7 7 chr15 64167340 64167650 -37212871 - AluSg SINE Alu 0 310 1 1227 182 30 47 chr15 64167674 64167922 -37212599 + L1MB3 LINE L1 5888 6132 -51 2258 104 3 7 chr15 64167922 64168230 -37212291 + AluSg SINE Alu 1 307 -3 1227 182 30 47 chr15 64168230 64168278 -37212243 + L1MB3 LINE L1 6132 6179 -4 246 293 107 29 chr15 64168971 64169111 -37211410 + MIR SINE MIR 110 260 -2 306 0 0 0 chr15 64169130 64169164 -37211357 + (TG)n Simple_repeat Simple_repeat 1 34 0 467 254 0 0 chr15 64169836 64169950 -37210571 - L1M4 LINE L1 -806 5340 5227 562 278 57 34 chr15 64169975 64170184 -37210337 - MIR SINE MIR 0 262 49 2206 128 13 0 chr15 64170321 64170627 -37209894 + AluSg SINE Alu 1 310 0 553 271 53 22 chr15 64172078 64172303 -37208218 + MIR SINE MIR 31 262 0 218 298 10 55 chr15 64172352 64172539 -37207982 + MIR SINE MIR 26 234 -28 805 260 119 31 chr15 64172585 64172939 -37207582 + LTR16A LTR ERVL 64 448 -2 180 243 47 96 chr15 64174242 64174367 -37206154 - MIR3 SINE MIR -15 193 76 421 286 20 20 chr15 64174508 64174655 -37205866 - MIR3 SINE MIR -29 179 33 227 393 27 0 chr15 64174717 64174867 -37205654 - L2 LINE L2 -18 3254 3101 320 291 136 0 chr15 64174987 64175090 -37205431 + LTR67 LTR ERVL 101 217 -340 2843 160 23 52 chr15 64175496 64176096 -37204425 - L1MC3 LINE L1 -8 7777 7195 266 309 32 0 chr15 64176098 64176192 -37204329 - MLT1F1 LTR MaLR -436 131 35 1955 152 0 3 chr15 64176197 64176529 -37203992 - AluJb SINE Alu 0 331 1 488 226 35 40 chr15 64176534 64176733 -37203788 - L1MC5 LINE L1 -183 7778 7581 585 218 55 0 chr15 64176770 64176935 -37203586 - L1MC5 LINE L1 -516 7445 7272 2194 131 10 0 chr15 64177091 64177397 -37203124 + AluSx SINE Alu 1 309 -3 353 75 19 0 chr15 64177397 64177450 -37203071 + (GGAGA)n Simple_repeat Simple_repeat 2 55 0 819 231 70 45 chr15 64177578 64177821 -37202700 + MIR SINE MIR 4 252 -10 1341 148 49 12 chr15 64177977 64178220 -37202301 + L1PA15 LINE L1 5914 6165 0 313 371 45 0 chr15 64178225 64178357 -37202164 - MIR SINE MIR -109 153 16 514 267 113 65 chr15 64178372 64178494 -37202027 - MIR SINE MIR 0 262 147 2422 90 0 7 chr15 64178494 64178804 -37201717 - AluSg SINE Alu -2 308 1 514 267 113 65 chr15 64178804 64178928 -37201593 - MIR SINE MIR -115 147 4 279 54 0 0 chr15 64179909 64179946 -37200575 + (TG)n Simple_repeat Simple_repeat 2 38 0 293 277 231 8 chr15 64180026 64180156 -37200365 - MIR SINE MIR -70 192 34 403 320 71 31 chr15 64180321 64180546 -37199975 - L2 LINE L2 -143 3129 2896 186 356 11 35 chr15 64180628 64180715 -37199806 - L2 LINE L2 -527 2787 2703 501 200 18 18 chr15 64180802 64180912 -37199609 + MIR3 SINE MIR 88 197 -11 347 263 32 0 chr15 64181002 64181097 -37199424 - L2 LINE L2 -1015 2299 2202 * 1802 242 175 25 chr15 64181095 64181383 -37199138 + L2 LINE L2 2176 2419 -894 2242 78 0 11 chr15 64181383 64181690 -37198831 + AluYa5 SINE Alu 1 304 0 1802 242 175 25 chr15 64181690 64182399 -37198122 + L2 LINE L2 2419 3308 -5 211 284 53 32 chr15 64182397 64182492 -37198029 - MIR SINE MIR -157 105 9 * 207 210 30 50 chr15 64183113 64183213 -37197308 + (CCCG)n Simple_repeat Simple_repeat 1 98 0 305 336 64 0 chr15 64183481 64183621 -37196900 + MIR3 SINE MIR 33 181 -27 387 0 0 0 chr15 64183727 64183770 -37196751 + (TG)n Simple_repeat Simple_repeat 2 44 0 360 219 65 65 chr15 64184351 64184474 -37196047 - MIR SINE MIR -135 127 5 183 171 114 68 chr15 64184473 64184561 -37195960 + MIR SINE MIR 45 136 -72 * 245 257 19 19 chr15 64184791 64184896 -37195625 + G-rich Low_complexity Low_complexity 3 107 0 227 262 0 93 chr15 64185031 64185203 -37195318 + G-rich Low_complexity Low_complexity 3 158 0 535 280 34 6 chr15 64185541 64185716 -37194805 - MIR3 SINE MIR -28 180 1 2148 115 42 0 chr15 64185755 64186042 -37194479 + AluSx SINE Alu 1 299 -13 1774 153 3 17 chr15 64186049 64186360 -37194161 + AluJo SINE Alu 1 307 0 394 246 77 15 chr15 64188889 64189019 -37191502 + MIR3 SINE MIR 10 147 -61 1225 263 50 21 chr15 64189031 64189369 -37191152 - LTR16C LTR ERVL 0 491 144 204 97 0 0 chr15 64189818 64189849 -37190672 + (T)n Simple_repeat Simple_repeat 1 31 0 189 338 65 65 chr15 64189876 64190030 -37190491 + L2 LINE L2 2909 3062 -210 1266 135 32 147 chr15 64190047 64190420 -37190101 + AluJb SINE Alu 1 334 0 513 205 0 32 chr15 64190420 64190605 -37189916 + GA-rich Low_complexity Low_complexity 2 180 0 203 190 52 52 chr15 64190810 64190868 -37189653 - L2 LINE L2 -9 3304 3247 350 283 75 33 chr15 64190935 64191055 -37189466 - MIR3 SINE MIR -13 195 71 363 44 0 0 chr15 64191567 64191612 -37188909 + (TG)n Simple_repeat Simple_repeat 2 46 0 370 302 116 12 chr15 64192214 64192440 -37188081 - MIR SINE MIR 0 262 19 1934 171 0 0 chr15 64192453 64192745 -37187776 - AluJb SINE Alu -20 292 1 297 273 112 35 chr15 64192917 64192993 -37187528 + MIR SINE MIR 95 164 -98 2521 88 0 0 chr15 64192993 64193301 -37187220 - AluSp SINE Alu -5 308 1 297 273 112 35 chr15 64193301 64193367 -37187154 + MIR SINE MIR 164 248 -14 1682 174 65 7 chr15 64194146 64194310 -37186211 - AluJb SINE Alu -1 311 158 423 0 0 0 chr15 64194310 64194357 -37186164 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 2344 90 0 0 chr15 64194357 64194636 -37185885 - AluSc SINE Alu -30 279 1 1682 174 65 7 chr15 64194636 64194763 -37185758 - AluJb SINE Alu -153 159 2 2704 231 89 22 chr15 64194924 64195857 -37184664 - L1ME3 LINE L1 -1 6161 5151 2228 100 6 26 chr15 64195857 64196168 -37184353 - AluSx SINE Alu -7 305 1 2704 231 89 22 chr15 64196168 64196300 -37184221 - L1ME3 LINE L1 -1011 5151 5029 592 297 43 32 chr15 64196353 64196644 -37183877 - L1ME3A LINE L1 -250 5912 5642 1859 140 3 41 chr15 64196976 64197268 -37183253 + AluJb SINE Alu 11 291 -21 246 347 57 7 chr15 64197553 64197700 -37182821 - MIR SINE MIR -62 146 16 336 256 24 89 chr15 64197801 64197973 -37182548 - MIR3 SINE MIR -45 163 30 226 229 0 0 chr15 64199733 64199781 -37180740 + (CA)n Simple_repeat Simple_repeat 1 48 0 223 250 0 0 chr15 64199799 64199843 -37180678 + G-rich Low_complexity Low_complexity 4 47 0 367 250 10 19 chr15 64200445 64200549 -37179972 - L2 LINE L2 -1 3312 3210 197 311 49 16 chr15 64201081 64201142 -37179379 - MIR3 SINE MIR -50 158 96 1172 67 0 0 chr15 64201247 64201382 -37179139 + AluSq/x SINE Alu 1 135 -178 1753 132 0 8 chr15 64201382 64201625 -37178896 + AluSg SINE Alu 1 241 -69 317 261 90 18 chr15 64201957 64202068 -37178453 + MIR SINE MIR 17 135 -73 2632 52 7 0 chr15 64202068 64202409 -37178112 - AluY SINE Alu 0 343 1 1920 118 71 0 chr15 64202412 64202692 -37177829 - AluSx SINE Alu -12 300 1 293 293 86 29 chr15 64202715 64202855 -37177666 - L2 LINE L2 -4 3309 3162 852 202 67 0 chr15 64203233 64203441 -37177080 + MER33 DNA MER1_type 1 222 -102 2393 91 0 0 chr15 64203441 64203737 -37176784 + AluSg SINE Alu 2 297 -13 198 0 0 0 chr15 64203737 64203759 -37176762 + (TA)n Simple_repeat Simple_repeat 2 23 0 390 254 158 34 chr15 64203859 64204068 -37176453 - MIR SINE MIR -18 244 10 543 273 30 64 chr15 64204119 64204223 -37176298 - L1ME4a LINE L1 -239 5882 5776 1830 156 13 23 chr15 64204223 64204524 -37175997 - AluJo SINE Alu -14 298 1 543 273 30 64 chr15 64204524 64204683 -37175838 - L1ME4a LINE L1 -345 5776 5628 531 299 234 13 chr15 64205004 64205535 -37174986 + L2 LINE L2 2092 2739 -575 387 196 29 0 chr15 64205572 64205674 -37174847 - Charlie5 DNA MER1_type -27 2585 2481 264 59 0 0 chr15 64205674 64205708 -37174813 + (TA)n Simple_repeat Simple_repeat 1 34 0 206 143 0 24 chr15 64207873 64207915 -37172606 + (CGGGGG)n Simple_repeat Simple_repeat 1 41 0 21 71 0 0 chr15 64208976 64209018 -37171503 + GC_rich Low_complexity Low_complexity 1 42 0 201 207 12 37 chr15 64209067 64209149 -37171372 + C-rich Low_complexity Low_complexity 2 81 0 342 278 233 40 chr15 64210544 64210720 -37169801 - MIR SINE MIR -4 258 49 209 212 0 91 chr15 64210862 64210928 -37169593 + MIR SINE MIR 124 183 -79 196 133 50 100 chr15 64211230 64211290 -37169231 + MIR SINE MIR 19 75 -187 727 233 79 10 chr15 64212437 64212639 -37167882 + MIR SINE MIR 31 246 -16 361 322 46 35 chr15 64212647 64212821 -37167700 + L1ME3A LINE L1 5777 5952 -218 3779 162 21 58 chr15 64212843 64212895 -37167626 + L1MB3 LINE L1 5419 5471 -712 2311 95 3 7 chr15 64212895 64213201 -37167320 - AluSp SINE Alu -8 305 1 3779 162 21 58 chr15 64213201 64213551 -37166970 + L1MB3 LINE L1 5471 5781 -402 2205 96 3 0 chr15 64213551 64213853 -37166668 - AluSq SINE Alu 0 303 1 3779 162 21 58 chr15 64213853 64214240 -37166281 + L1MB3 LINE L1 5781 6181 -2 2104 128 7 0 chr15 64214249 64214545 -37165976 + AluSx SINE Alu 1 298 -14 29 28 0 0 chr15 64216002 64216038 -37164483 + AT_rich Low_complexity Low_complexity 1 36 0 2220 116 3 3 chr15 64216079 64216382 -37164139 + AluSq SINE Alu 1 303 -10 2521 172 31 38 chr15 64216390 64216573 -37163948 + L1MB3 LINE L1 5641 5824 -359 2261 60 46 0 chr15 64216573 64216857 -37163664 - AluY SINE Alu -13 298 2 2521 172 31 38 chr15 64216857 64216991 -37163530 + L1MB3 LINE L1 5824 5957 -226 1878 137 33 33 chr15 64216991 64217297 -37163224 + AluSx SINE Alu 1 306 -6 2521 172 31 38 chr15 64217297 64217525 -37162996 + L1MB3 LINE L1 5957 6183 0 1847 110 0 0 chr15 64217604 64217841 -37162680 + AluSc SINE Alu 1 237 -72 225 339 79 31 chr15 64217946 64218073 -37162448 + L2 LINE L2 3180 3312 -1 2090 92 14 3 chr15 64218545 64218828 -37161693 + AluSg SINE Alu 6 291 -19 211 143 71 0 chr15 64220308 64220350 -37160171 + L2 LINE L2 3178 3222 -91 530 139 0 0 chr15 64220445 64220524 -37159997 + MADE1 DNA Mariner 2 80 0 258 318 161 1 chr15 64220637 64220963 -37159558 + MLT1L LTR MaLR 204 607 -8 219 211 0 0 chr15 64222194 64222232 -37158289 + MIR SINE MIR 74 111 -97 492 217 14 84 chr15 64222337 64222480 -37158041 - MER94 DNA DNA -1 133 1 257 303 74 16 chr15 64222508 64222630 -37157891 + MIR SINE MIR 55 183 -79 2335 97 3 0 chr15 64223176 64223476 -37157045 + AluSp SINE Alu 1 301 -12 544 212 23 23 chr15 64223560 64223692 -37156829 - MIR SINE MIR -84 178 47 257 303 45 22 chr15 64224251 64224340 -37156181 - L2 LINE L2 -59 3213 3123 2405 53 0 7 chr15 64224789 64225096 -37155425 + AluY SINE Alu 1 305 0 328 295 9 54 chr15 64226202 64226314 -37154207 - L2 LINE L2 -27 3245 3139 201 74 0 0 chr15 64226434 64226461 -37154060 + (TC)n Simple_repeat Simple_repeat 2 28 0 559 200 87 60 chr15 64226757 64226907 -37153614 + MIR3 SINE MIR 34 187 -21 2107 102 7 0 chr15 64226925 64227233 -37153288 - AluSq SINE Alu 0 310 1 1558 79 0 0 chr15 64227954 64228144 -37152377 - AluSg/x SINE Alu -16 296 107 570 299 41 57 chr15 64228735 64228893 -37151628 + MIR SINE MIR 20 174 -88 2322 115 0 0 chr15 64228893 64229189 -37151332 + AluSx SINE Alu 1 296 -16 570 299 41 57 chr15 64229189 64229274 -37151247 + MIR SINE MIR 174 259 -3 1352 284 108 33 chr15 64229851 64230464 -37150057 + MER115 DNA AcHobo 5 663 -30 351 44 0 0 chr15 64230480 64230525 -37149996 + (TATG)n Simple_repeat Simple_repeat 2 46 0 259 273 189 22 chr15 64230889 64231116 -37149405 - L2 LINE L2 -181 3091 2827 280 270 14 14 chr15 64233155 64233229 -37147292 + MIR3 SINE MIR 81 154 -54 2519 69 0 19 chr15 64233274 64233591 -37146930 - AluY SINE Alu 0 311 1 264 244 118 109 chr15 64233761 64233990 -37146531 - L2 LINE L2 -5 3267 3037 542 301 62 6 chr15 64234464 64234640 -37145881 + MIR3 SINE MIR 15 200 -8 428 245 172 33 chr15 64234838 64234989 -37145532 + MER5B DNA MER1_type 5 176 -2 321 26 0 0 chr15 64235079 64235117 -37145404 + (CA)n Simple_repeat Simple_repeat 1 38 0 2275 94 28 0 chr15 64236105 64236393 -37144128 - AluSq SINE Alu -12 301 6 2292 91 3 0 chr15 64237858 64238145 -37142376 + AluSg SINE Alu 1 288 -22 265 305 130 30 chr15 64238945 64239076 -37141445 - MIR SINE MIR -50 212 69 229 274 147 59 chr15 64239457 64239559 -37140962 + MIR SINE MIR 17 127 -81 383 193 11 11 chr15 64239625 64239713 -37140808 - MIR3 SINE MIR -30 178 91 693 239 67 36 chr15 64241003 64241455 -37139066 - LTR33A LTR ERVL -6 517 7 864 212 22 11 chr15 64241618 64241802 -37138719 + MER5A DNA MER1_type 1 186 -3 208 253 126 23 chr15 64241965 64242052 -37138469 + MIR SINE MIR 103 198 -64 248 259 62 12 chr15 64242378 64242459 -37138062 + MIR SINE MIR 56 140 -122 227 333 25 2 chr15 64243117 64243218 -37137303 - MIR3 SINE MIR -46 162 57 358 284 130 19 chr15 64244148 64244310 -37136211 + MIR SINE MIR 77 256 -6 4634 179 73 36 chr15 64244657 64244768 -37135753 + MER45B DNA AcHobo 1 106 -1475 1940 114 15 11 chr15 64244768 64245041 -37135480 - AluSq SINE Alu -39 274 1 4634 179 73 36 chr15 64245041 64245932 -37134589 + MER45B DNA AcHobo 106 1040 0 1544 166 3 99 chr15 64246411 64246755 -37133766 - AluJb SINE Alu -1 311 1 462 276 24 16 chr15 64246759 64246886 -37133635 + MIR SINE MIR 65 192 -70 227 310 68 45 chr15 64247168 64247358 -37133163 + MIR SINE MIR 51 241 -21 252 189 87 36 chr15 64247388 64247477 -37133044 + MIR3 SINE MIR 68 156 -52 294 106 0 0 chr15 64247526 64247573 -37132948 + (GGGA)n Simple_repeat Simple_repeat 3 49 0 1631 170 50 29 chr15 64249071 64249110 -37131411 + L1MB5 LINE L1 5790 5827 -347 2392 96 3 0 chr15 64249110 64249411 -37131110 + AluSq SINE Alu 1 302 -11 1631 170 50 29 chr15 64249411 64249713 -37130808 + L1MB5 LINE L1 5827 6138 -36 213 208 19 47 chr15 64249738 64249844 -37130677 + (TATAA)n Simple_repeat Simple_repeat 3 105 0 342 282 77 8 chr15 64249990 64250107 -37130414 - MIR3 SINE MIR -49 159 35 305 302 7 60 chr15 64250916 64251065 -37129456 + MIR SINE MIR 72 212 -50 245 29 29 0 chr15 64251458 64251492 -37129029 + (TG)n Simple_repeat Simple_repeat 1 35 0 200 222 22 0 chr15 64252244 64252289 -37128232 + L2 LINE L2 3268 3313 0 310 267 78 0 chr15 64253398 64253488 -37127033 + L2 LINE L2 3176 3272 0 523 227 109 8 chr15 64254337 64254465 -37126056 + MIR3 SINE MIR 46 186 -22 614 331 107 6 chr15 64255135 64255498 -37125023 + L2 LINE L2 2385 2784 -530 372 266 133 8 chr15 64255548 64255676 -37124845 + L2 LINE L2 2916 3059 -213 303 247 11 56 chr15 64256277 64256366 -37124155 + L2 LINE L2 3187 3271 -1 255 297 16 0 chr15 64258279 64258343 -37122178 + L2 LINE L2 3249 3313 0 372 227 10 52 chr15 64258523 64258620 -37121901 + MIR3 SINE MIR 67 159 -49 198 229 62 0 chr15 64259717 64259765 -37120756 + MIR SINE MIR 150 200 -62 5099 159 29 32 chr15 64259981 64260991 -37119530 - L1MB7 LINE L1 0 6359 5347 2124 140 3 0 chr15 64260991 64261298 -37119223 - AluSx SINE Alu -4 308 1 5099 159 29 32 chr15 64261298 64261348 -37119173 - L1MB7 LINE L1 -1012 5347 5298 2375 93 0 34 chr15 64261348 64261672 -37118849 - AluSq SINE Alu 0 313 1 5099 159 29 32 chr15 64261672 64262257 -37118264 - L1MB7 LINE L1 -1061 5298 4741 264 59 0 0 chr15 64262273 64262307 -37118214 + (TA)n Simple_repeat Simple_repeat 2 35 0 2343 71 0 24 chr15 64262307 64262601 -37117920 - AluY SINE Alu -24 287 1 251 319 86 17 chr15 64263015 64263131 -37117390 + L2 LINE L2 3141 3264 -8 310 301 46 26 chr15 64263769 64263930 -37116591 - MIR3 SINE MIR -60 148 1 181 300 0 0 chr15 64264816 64264856 -37115665 + MIR SINE MIR 110 149 -59 230 188 217 0 chr15 64264923 64264992 -37115529 - L2 LINE L2 0 3313 3230 326 169 60 72 chr15 64266590 64266673 -37113848 - MIR3 SINE MIR -19 189 108 2268 112 0 0 chr15 64267021 64267316 -37113205 + AluSx SINE Alu 1 295 -17 244 318 0 35 chr15 64267959 64268044 -37112477 + L2 LINE L2 3003 3084 -188 204 246 16 49 chr15 64268089 64268150 -37112371 + L2 LINE L2 3201 3259 -13 584 293 163 31 chr15 64268198 64268713 -37111808 - L2 LINE L2 -1018 2296 1714 2172 130 0 0 chr15 64269015 64269308 -37111213 - AluJb SINE Alu -19 293 1 1389 113 54 14 chr15 64269966 64270187 -37110334 - MER30 DNA MER1_type 0 230 1 378 279 0 50 chr15 64271047 64271121 -37109400 - MIR SINE MIR -28 234 169 734 211 80 30 chr15 64271121 64271320 -37109201 - MER3 DNA MER1_type 0 209 1 378 279 0 50 chr15 64271320 64271385 -37109136 - MIR SINE MIR -93 169 102 193 147 0 29 chr15 64271412 64271446 -37109075 - MIR SINE MIR -57 151 119 282 294 119 32 chr15 64271713 64271839 -37108682 - MIR3 SINE MIR -19 189 53 525 311 66 42 chr15 64271948 64272118 -37108403 + MIR SINE MIR 14 178 -84 1874 131 29 39 chr15 64272118 64272424 -37108097 + AluJo SINE Alu 3 305 -7 2313 105 0 10 chr15 64272426 64272731 -37107790 + AluSq SINE Alu 1 302 -11 525 311 66 42 chr15 64272731 64272798 -37107723 + MIR SINE MIR 178 260 -2 1801 181 0 13 chr15 64273186 64273501 -37107020 - AluJo SINE Alu -1 311 1 242 252 93 50 chr15 64275459 64275598 -37104923 - MIR3 SINE MIR -63 145 1 442 302 13 38 chr15 64275790 64275949 -37104572 + L2 LINE L2 3114 3268 -4 567 269 152 15 chr15 64277518 64277715 -37102806 + MIR SINE MIR 13 236 -26 1746 151 7 30 chr15 64277789 64278087 -37102434 - AluJo SINE Alu -21 291 1 286 286 105 19 chr15 64278187 64278292 -37102229 - MIR SINE MIR -65 143 30 1769 163 35 0 chr15 64278542 64278855 -37101666 + MER44D DNA MER2_type 3 596 -13 1089 186 68 15 chr15 64278871 64279160 -37101361 - MER33 DNA MER1_type -40 284 1 192 231 96 0 chr15 64279214 64279266 -37101255 - MIR SINE MIR -118 90 34 707 330 38 4 chr15 64279281 64279517 -37101004 - MIR SINE MIR -6 256 13 1959 127 98 0 chr15 64279540 64279847 -37100674 + MER1B DNA MER1_type 1 337 0 310 252 31 47 chr15 64280454 64280581 -37099940 - MIR3 SINE MIR -83 125 1 216 287 172 0 chr15 64280790 64280912 -37099609 - MIR SINE MIR -118 144 2 255 306 24 12 chr15 64281310 64281395 -37099126 - MIR3 SINE MIR -12 196 111 209 279 62 85 chr15 64281810 64281939 -37098582 + MIR SINE MIR 67 192 -70 273 278 275 23 chr15 64282027 64282376 -37098145 - L3 LINE CR1 -142 1435 999 620 266 46 17 chr15 64282988 64283161 -37097360 - MIR3 SINE MIR -23 185 8 298 307 137 15 chr15 64283984 64284189 -37096332 - MIR SINE MIR 0 262 33 295 265 90 69 chr15 64284555 64284744 -37095777 + MIR SINE MIR 70 262 0 2359 95 10 7 chr15 64285538 64285844 -37094677 - AluSx SINE Alu -5 307 1 2237 127 3 13 chr15 64289051 64289359 -37091162 + AluSp SINE Alu 1 305 -8 370 261 11 0 chr15 64289826 64289918 -37090603 + MER94 DNA DNA 42 134 0 860 225 113 36 chr15 64289997 64290299 -37090222 - MER102a DNA MER1_type -3 327 3 228 255 0 0 chr15 64290436 64290487 -37090034 - L2 LINE L2 -2 3311 3261 269 299 52 10 chr15 64290799 64290896 -37089625 + L3 LINE CR1 1297 1397 -180 386 267 50 8 chr15 64291242 64291362 -37089159 - MIR SINE MIR -137 125 1 1988 147 3 0 chr15 64292658 64292950 -37087571 - AluSx SINE Alu -19 293 1 807 99 6 163 chr15 64292957 64293129 -37087392 - AluSg/x SINE Alu -10 300 156 320 179 0 0 chr15 64293129 64293185 -37087336 - Alu SINE Alu -246 56 1 713 186 43 12 chr15 64293193 64293354 -37087167 - L1MA10 LINE L1 0 6334 6169 647 204 39 19 chr15 64293382 64293588 -37086933 - L1ME1 LINE L1 -178 5988 5779 510 206 112 22 chr15 64294377 64294532 -37085989 - MIR3 SINE MIR -5 203 32 233 343 49 14 chr15 64294922 64295065 -37085456 - MIR3 SINE MIR -60 148 1 330 290 80 29 chr15 64295086 64295224 -37085297 + MIR SINE MIR 1 145 -117 184 289 0 0 chr15 64295500 64295545 -37084976 + L2 LINE L2 3263 3307 -6 211 324 56 19 chr15 64296703 64296811 -37083710 + MIR3 SINE MIR 90 201 -7 195 42 0 0 chr15 64299693 64299717 -37080804 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 189 0 0 0 chr15 64300015 64300036 -37080485 + (T)n Simple_repeat Simple_repeat 1 21 0 2459 84 0 10 chr15 64300064 64300375 -37080146 - AluSx SINE Alu -4 308 1 2306 90 0 0 chr15 64300539 64300845 -37079676 - AluSg SINE Alu 0 308 3 1085 92 41 26 chr15 64300900 64301095 -37079426 - L1MA5A LINE L1 -2 6295 6098 960 162 6 0 chr15 64301224 64301403 -37079118 - L1MA5A LINE L1 -160 6137 5958 421 328 99 5 chr15 64302195 64302387 -37078134 + MIR SINE MIR 2 211 -51 2035 113 29 0 chr15 64302426 64302700 -37077821 + AluSq SINE Alu 1 282 -31 867 181 23 74 chr15 64302793 64303008 -37077513 + MER20 DNA MER1_type 16 219 0 23 0 0 0 chr15 64304027 64304050 -37076471 + AT_rich Low_complexity Low_complexity 1 23 0 403 244 37 44 chr15 64304232 64304367 -37076154 + MIR3 SINE MIR 60 193 -15 2339 81 14 3 chr15 64304924 64305219 -37075302 + AluSq SINE Alu 1 298 -15 206 294 37 55 chr15 64305692 64305801 -37074720 + MIR SINE MIR 48 154 -108 322 266 46 18 chr15 64305838 64305947 -37074574 - MLT1H LTR MaLR 0 549 438 535 273 7 7 chr15 64306095 64306249 -37074272 - MLT1H LTR MaLR -366 183 30 195 161 0 0 chr15 64306268 64306299 -37074222 + L2 LINE L2 3210 3240 -32 262 277 24 12 chr15 64306458 64306541 -37073980 + L2 LINE L2 3230 3313 0 404 219 0 0 chr15 64306630 64306703 -37073818 + MIR SINE MIR 46 118 -144 250 297 22 11 chr15 64307775 64307866 -37072655 + MIR SINE MIR 23 114 -94 22 35 0 0 chr15 64308247 64308276 -37072245 + AT_rich Low_complexity Low_complexity 1 29 0 2131 142 0 0 chr15 64308294 64308589 -37071932 - AluJb SINE Alu -17 295 1 1739 197 70 103 chr15 64308702 64309291 -37071230 - L1ME1 LINE L1 -1 6165 5601 688 106 8 49 chr15 64309291 64309414 -37071107 + L1MA4 LINE L1 6176 6293 -7 1739 197 70 103 chr15 64309414 64309514 -37071007 - L1ME1 LINE L1 -565 5601 5499 272 255 98 20 chr15 73612441 73612543 -27767978 - MIR SINE MIR -56 152 43 481 260 8 16 chr15 73612762 73612889 -27767632 - L2 LINE L2 -213 3059 2934 228 293 144 28 chr15 73612926 73613141 -27767380 - L2 LINE L2 -562 2752 2513 339 309 57 17 chr15 73613311 73613486 -27767035 - MIR SINE MIR -17 245 64 220 167 182 0 chr15 73613798 73613864 -27766657 + MIR SINE MIR 46 124 -84 1346 88 0 0 chr15 73614622 73614792 -27765729 - AluSx SINE Alu -141 171 2 358 302 69 46 chr15 73614868 73615477 -27765044 + L1MEc LINE L1 968 1590 -4806 241 98 20 39 chr15 73615557 73615608 -27764913 + (CTATA)n Simple_repeat Simple_repeat 4 53 0 1135 182 15 0 chr15 73615727 73615930 -27764591 + AluJo SINE Alu 5 210 -102 2284 87 0 0 chr15 73616037 73616337 -27764184 - AluY SINE Alu -11 300 1 1959 148 3 34 chr15 73616337 73616716 -27763805 + L1 LINE L1 4677 5043 -1103 2981 182 24 57 chr15 73616911 73617067 -27763454 - L1 LINE L1 -1431 4715 4555 2010 130 0 0 chr15 73617067 73617360 -27763161 - AluSx SINE Alu -19 293 1 2981 182 24 57 chr15 73617360 73617987 -27762534 - L1 LINE L1 -1591 4555 3958 279 0 0 0 chr15 73617994 73618025 -27762496 + (T)n Simple_repeat Simple_repeat 1 31 0 6704 166 46 26 chr15 73618135 73619382 -27761139 + L1 LINE L1 3093 4314 -1832 2204 104 0 0 chr15 73619382 73619679 -27760842 + AluY SINE Alu 1 297 -14 6704 166 46 26 chr15 73619679 73619711 -27760810 + L1 LINE L1 4314 4344 -1802 1840 157 0 3 chr15 73619711 73620011 -27760510 + AluJb SINE Alu 1 299 -13 6704 166 46 26 chr15 73620011 73620252 -27760269 + L1 LINE L1 4344 4644 -1502 1315 161 0 108 chr15 73620252 73620575 -27759946 + AluJo SINE Alu 1 288 -24 265 366 38 15 chr15 73620595 73620726 -27759795 + MIR SINE MIR 20 153 -109 365 339 46 20 chr15 73620924 73621119 -27759402 + MIR SINE MIR 53 252 -10 327 316 23 23 chr15 73621519 73621652 -27758869 + MIR3 SINE MIR 9 141 -67 189 196 0 0 chr15 73621911 73621957 -27758564 + G-rich Low_complexity Low_complexity 1 46 0 408 313 55 43 chr15 73622066 73622189 -27758332 - MER91A DNA MER1_type -26 170 43 1032 260 120 15 chr15 73622189 73622596 -27757925 - LTR16A LTR ERVL 0 450 1 408 313 55 43 chr15 73622596 73622635 -27757886 - MER91A DNA MER1_type -153 43 6 2296 94 3 0 chr15 73623174 73623483 -27757038 + AluSp SINE Alu 3 312 -1 986 92 14 7 chr15 73623631 73623773 -27756748 + AluSq/x SINE Alu 5 147 -166 518 166 0 55 chr15 73623873 73624036 -27756485 + pTR5 LTR ERV1 1107 1260 -1178 * 1551 112 40 109 chr15 73624031 73624307 -27756214 + pTR5 LTR ERV1 172 581 -133 1589 118 4 13 chr15 73624308 73624545 -27755976 - AluSx SINE Alu -77 235 1 1534 264 134 52 chr15 73624578 73624927 -27755594 - L1M4 LINE L1 -2411 3735 3416 1634 133 7 50 chr15 73624927 73625229 -27755292 - AluJo SINE Alu -23 289 1 1534 264 134 52 chr15 73625229 73625710 -27754811 - L1M4 LINE L1 -2730 3416 2976 1964 136 3 3 chr15 73625710 73626020 -27754501 + AluSx SINE Alu 1 310 -2 1534 264 134 52 chr15 73626020 73626453 -27754068 - L1M4 LINE L1 -3170 2976 2367 528 65 0 0 chr15 73626515 73626592 -27753929 + (CCTG)n Simple_repeat Simple_repeat 2 78 0 272 113 38 0 chr15 73626594 73626647 -27753874 + CT-rich Low_complexity Low_complexity 3 57 0 2176 247 78 55 chr15 73626749 73627704 -27752817 - L1 LINE L1 -1985 5580 4603 949 174 29 0 chr15 73627715 73627887 -27752634 - AluSg/x SINE Alu -2 308 132 2097 140 0 0 chr15 73627887 73628195 -27752326 - AluSx SINE Alu -4 308 1 1851 235 67 79 chr15 73628197 73628408 -27752113 - L1 LINE L1 -2970 4595 4383 2256 87 10 0 chr15 73628408 73628718 -27751803 - AluSp SINE Alu 0 313 1 1851 235 67 79 chr15 73628718 73629649 -27750872 - L1 LINE L1 -3182 4383 3443 216 0 0 0 chr15 73629649 73629673 -27750848 + (TG)n Simple_repeat Simple_repeat 1 24 0 1851 235 67 79 chr15 73629673 73630192 -27750329 - L1 LINE L1 -4122 3443 2919 7464 93 144 13 chr15 73630835 73632045 -27748476 - SVA Other Other 0 1386 19 4454 153 22 32 chr15 73632245 73633088 -27747433 - L1MB8 LINE L1 0 6178 5344 1858 143 14 3 chr15 73633477 73633771 -27746750 - AluSx SINE Alu -15 297 1 404 328 35 12 chr15 73634901 73635072 -27745449 - MIR SINE MIR -71 191 17 233 83 0 28 chr15 73635270 73635306 -27745215 - MLT1L LTR MaLR -4 611 577 2674 253 50 21 chr15 73636482 73637334 -27743187 - MER45C DNA AcHobo -3 950 1 455 326 27 45 chr15 73637334 73637737 -27742784 + L2 LINE L2 2657 3054 -218 2149 125 0 3 chr15 73637799 73638112 -27742409 - AluSx SINE Alu 0 312 1 413 250 70 23 chr15 73639026 73639154 -27741367 - MIR SINE MIR -32 230 97 3053 175 18 8 chr15 73639256 73640149 -27740372 + L1MA9 LINE L1 4892 5793 -519 1152 135 24 0 chr15 73640161 73640331 -27740190 - Tigger3b DNA MER2_type 0 1232 1059 * 1948 154 41 19 chr15 73640305 73640624 -27739897 + MER1B DNA MER1_type 14 339 0 5065 143 71 36 chr15 73640624 73641392 -27739129 - Tigger3b DNA MER2_type -1961 1067 252 2179 54 34 34 chr15 73641392 73641689 -27738832 - AluY SINE Alu -14 297 1 5065 143 71 36 chr15 73641689 73641951 -27738570 - Tigger3b DNA MER2_type -2776 252 1 1992 206 31 17 chr15 73641952 73642428 -27738093 + L1MA9 LINE L1 5791 6273 -39 3157 213 52 17 chr15 73642440 73643339 -27737182 + L1MC1 LINE L1 4368 5298 -848 9479 54 4 0 chr15 73643340 73644500 -27736021 + L1P LINE L1 1 1165 -4981 7674 29 5 0 chr15 73644500 73645487 -27735034 + L1PA4 LINE L1 5162 6152 -3 3388 147 9 2 chr15 73645506 73646070 -27734451 + L1MC1 LINE L1 5283 5850 -483 1703 159 0 17 chr15 73646074 73646375 -27734146 + AluJb SINE Alu 1 296 -16 968 172 126 15 chr15 73646386 73646584 -27733937 + AluJo SINE Alu 1 220 -92 276 146 0 0 chr15 73646584 73646625 -27733896 + FLAM_A SINE Alu 85 125 -8 2480 145 11 23 chr15 73646641 73647075 -27733446 + L1MC1 LINE L1 5895 6323 -10 1923 127 0 3 chr15 73647914 73648266 -27732255 + AluSq SINE Alu 1 351 0 188 320 68 39 chr15 73649923 73650026 -27730495 - MIR3 SINE MIR -32 176 71 2175 111 0 3 chr15 73650476 73650783 -27729738 - AluSx SINE Alu -6 306 1 3858 14 0 0 chr15 73650880 73651313 -27729208 + L1PA3 LINE L1 5723 6155 0 300 321 64 21 chr15 73651548 73651688 -27728833 + MIR3 SINE MIR 47 192 -16 183 256 0 0 chr15 73652605 73652644 -27727877 + L2 LINE L2 3216 3254 -18 354 231 28 98 chr15 73652736 73652892 -27727629 - L1MC4a LINE L1 0 3093 2964 305 297 15 67 chr15 73653499 73653694 -27726827 + L1ME LINE L1 5650 5834 -287 419 190 60 11 chr15 73653753 73653855 -27726666 + L1MB2 LINE L1 6072 6180 0 853 114 23 0 chr15 73653890 73654022 -27726499 + AluJo SINE Alu 1 135 -177 375 23 0 0 chr15 73654214 73654258 -27726263 + (TG)n Simple_repeat Simple_repeat 2 45 0 2153 112 0 0 chr15 73655157 73655452 -27725069 + AluSx SINE Alu 2 296 -16 2009 108 0 0 chr15 73656510 73656779 -27723742 - AluSx SINE Alu -43 269 1 779 250 142 0 chr15 73657085 73657297 -27723224 + MIR SINE MIR 20 261 -1 250 235 0 29 chr15 73657959 73658027 -27722494 - MIR3 SINE MIR -50 158 93 359 260 144 20 chr15 73658681 73658811 -27721710 - MIR SINE MIR -65 143 16 207 0 0 0 chr15 73659562 73659585 -27720936 + (CAGG)n Simple_repeat Simple_repeat 1 23 0 186 43 0 0 chr15 73660104 73660127 -27720394 + (CCA)n Simple_repeat Simple_repeat 2 24 0 196 313 54 0 chr15 73660247 73660361 -27720160 + MIR SINE MIR 14 136 -72 4455 242 40 42 chr15 73660648 73662662 -27717859 - L1MC4a LINE L1 -4516 2137 371 1967 163 44 62 chr15 73663539 73663975 -27716546 + MSTC LTR MaLR 1 428 0 2555 107 14 17 chr15 73664600 73665013 -27715508 + L1PB2 LINE L1 5619 6030 -121 218 352 39 74 chr15 73665176 73665406 -27715115 + L2 LINE L2 985 1206 -2108 782 327 68 68 chr15 73665446 73666379 -27714142 - L2 LINE L2 -3 3269 2349 1976 269 36 23 chr15 73666410 73667012 -27713509 + L1P4 LINE L1 1 610 -6177 9342 211 24 61 chr15 73667362 73668234 -27712287 + L1P4 LINE L1 1324 2226 -4591 2256 147 65 8 chr15 73668234 73668636 -27711885 + MSTA LTR MaLR 3 427 -1 9342 211 24 61 chr15 73668636 73670192 -27710329 + L1P4 LINE L1 2226 3837 -2980 231 162 0 0 chr15 73670192 73670229 -27710292 - tRNA-Asp-GAC tRNA tRNA -38 37 1 9342 211 24 61 chr15 73670229 73672260 -27708261 + L1P4 LINE L1 3837 5940 -877 2310 97 0 7 chr15 73672260 73672570 -27707951 + AluY SINE Alu 1 308 -3 9342 211 24 61 chr15 73672570 73672955 -27707566 + L1P4 LINE L1 5940 6039 -778 2481 98 50 6 chr15 73672955 73673314 -27707207 - THE1C LTR MaLR 0 375 1 9342 211 24 61 chr15 73673314 73673396 -27707125 + L1P4 LINE L1 6039 6122 -695 4159 122 22 0 chr15 73673387 73674062 -27706459 + L1PA15 LINE L1 5297 5986 -179 * 948 195 12 0 chr15 73675759 73675928 -27704593 + AluJb SINE Alu 130 300 -12 2260 128 0 0 chr15 73676857 73677153 -27703368 + AluSx SINE Alu 1 296 -16 1664 139 47 23 chr15 73677493 73677750 -27702771 - MER2 DNA MER2_type -37 308 42 2121 126 27 24 chr15 73677750 73678124 -27702397 + THE1C LTR MaLR 1 375 0 1664 139 47 23 chr15 73678124 73678167 -27702354 - MER2 DNA MER2_type -303 42 1 309 229 90 0 chr15 73678215 73678297 -27702224 - MIR SINE MIR -38 170 78 382 242 129 27 chr15 73678831 73678987 -27701534 - MIR SINE MIR -63 145 24 607 212 0 53 chr15 73679170 73679302 -27701219 + FLAM_A SINE Alu 3 127 -6 599 304 36 10 chr15 73679400 73679594 -27700927 - MIR SINE MIR -8 254 56 222 294 15 0 chr15 73679743 73679811 -27700710 + GA-rich Low_complexity Low_complexity 4 72 0 10475 146 26 14 chr15 73679975 73682844 -27697677 + L1MA2 LINE L1 3256 6147 -7 1402 114 61 0 chr15 73682869 73683115 -27697406 + L1MA2 LINE L1 6042 6302 -2 1033 208 0 0 chr15 73683133 73683301 -27697220 + AluJo SINE Alu 1 168 -144 313 250 9 0 chr15 73683669 73683785 -27696736 - L1ME LINE L1 -5155 915 799 5160 161 48 7 chr15 73683930 73685905 -27694616 - L1MA4 LINE L1 -2 6298 4240 1055 184 6 0 chr15 73685905 73686084 -27694437 - AluJo SINE Alu -12 300 121 349 156 0 0 chr15 73686095 73686159 -27694362 - L1MA4 LINE L1 -1926 4220 4157 738 306 75 32 chr15 73686178 73686551 -27693970 - MLT1J2 LTR MaLR -59 391 3 272 186 0 86 chr15 73686552 73686622 -27693899 - L2 LINE L2 -686 2628 2565 249 33 0 0 chr15 73688043 73688073 -27692448 + (CA)n Simple_repeat Simple_repeat 2 31 0 488 305 168 11 chr15 73688622 73688907 -27691614 + L2 LINE L2 1548 1877 -1437 275 239 66 46 chr15 73688980 73689177 -27691344 - L1MDa LINE L1 -4745 1795 1595 * 624 258 37 5 chr15 73689172 73689389 -27691132 + L1MC4 LINE L1 7678 7901 -141 663 177 19 70 chr15 73689504 73689662 -27690859 + MER58B DNA MER1_type 192 341 0 1220 213 61 9 chr15 73689836 73690164 -27690357 + L1MC4a LINE L1 6272 6616 -1192 735 231 77 81 chr15 73690230 73690678 -27689843 - MLT1H1 LTR MaLR -115 440 1 189 348 0 89 chr15 73690710 73690845 -27689676 + L2 LINE L2 3133 3255 -17 30 27 0 0 chr15 73691553 73691590 -27688931 + AT_rich Low_complexity Low_complexity 1 37 0 2391 126 5 18 chr15 73692174 73692554 -27687967 + THE1C LTR MaLR 1 375 0 1851 200 109 26 chr15 73692833 73693263 -27687258 - L1MC4 LINE L1 -504 7538 7040 192 97 0 0 chr15 73693263 73693294 -27687227 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1851 200 109 26 chr15 73693294 73693479 -27687042 - L1MC4 LINE L1 -1002 7040 6872 24 53 0 0 chr15 73693506 73693544 -27686977 + AT_rich Low_complexity Low_complexity 1 38 0 331 295 19 19 chr15 73693573 73693729 -27686792 - L1 LINE L1 -1127 5019 4864 22 0 0 0 chr15 73694061 73694083 -27686438 + AT_rich Low_complexity Low_complexity 1 22 0 1901 93 65 18 chr15 73694301 73694603 -27685918 + AluSx SINE Alu 1 312 0 230 277 76 0 chr15 73694742 73694861 -27685660 - HAL1 LINE L1 -1471 1036 909 4496 109 6 12 chr15 73695182 73695858 -27684663 + L1PA15 LINE L1 5494 6165 0 22 35 0 0 chr15 73696599 73696628 -27683893 + AT_rich Low_complexity Low_complexity 1 29 0 526 211 88 141 chr15 73696675 73696853 -27683668 - MIR SINE MIR -44 218 53 2000 153 6 10 chr15 73696853 73697166 -27683355 - AluSx SINE Alu 0 312 1 526 211 88 141 chr15 73697166 73697214 -27683307 - MIR SINE MIR -209 53 4 27 0 0 0 chr15 73697418 73697445 -27683076 + AT_rich Low_complexity Low_complexity 1 27 0 871 204 24 6 chr15 73697445 73697612 -27682909 - AluJb SINE Alu -24 288 119 346 221 15 0 chr15 73697757 73697893 -27682628 + (TA)n Simple_repeat Simple_repeat 1 138 0 17587 162 35 40 chr15 73697893 73699324 -27681197 - L1PA14 LINE L1 -5 7594 6157 2297 95 0 38 chr15 73699324 73699640 -27680881 - AluY SINE Alu -7 304 1 17587 162 35 40 chr15 73699640 73700029 -27680492 - L1PA14 LINE L1 -1442 6157 5767 2178 97 0 0 chr15 73700029 73700308 -27680213 - AluSc SINE Alu -9 300 22 17587 162 35 40 chr15 73700308 73703430 -27677091 - L1PA14 LINE L1 -1832 5767 2630 2084 121 3 0 chr15 73703430 73703719 -27676802 - AluSx SINE Alu -2 310 21 17587 162 35 40 chr15 73703719 73704195 -27676326 - L1PA14 LINE L1 -4969 2630 2153 2181 117 19 26 chr15 73704195 73704572 -27675949 + THE1C LTR MaLR 2 375 0 17587 162 35 40 chr15 73704572 73705177 -27675344 - L1PA14 LINE L1 -5446 2153 1607 341 308 68 34 chr15 73705637 73705783 -27674738 + L3 LINE CR1 1381 1531 -46 257 181 56 56 chr15 73706843 73706915 -27673606 - L2 LINE L2 0 3272 3201 180 143 54 0 chr15 73706915 73706971 -27673550 + (TA)n Simple_repeat Simple_repeat 2 60 0 311 255 43 11 chr15 73706973 73707067 -27673454 + L1MC4 LINE L1 6607 6703 -1339 1794 174 3 0 chr15 73707075 73707357 -27673164 - AluJo SINE Alu -29 283 1 306 125 0 0 chr15 73707459 73707507 -27673014 + (A)n Simple_repeat Simple_repeat 1 48 0 221 265 12 60 chr15 73707559 73707642 -27672879 - L2 LINE L2 -277 2995 2917 3493 110 70 0 chr15 73707701 73708219 -27672302 - MER41C LTR ERV1 0 554 1 2075 137 0 7 chr15 73708430 73708736 -27671785 + AluSx SINE Alu 1 304 -8 2930 211 107 68 chr15 73708746 73710384 -27670137 + L1MC5 LINE L1 5701 7453 -508 1931 140 6 19 chr15 73710384 73710699 -27669822 - AluJb SINE Alu -1 311 1 2930 211 107 68 chr15 73710699 73710950 -27669571 + L1MC5 LINE L1 7453 7693 -268 260 266 63 0 chr15 73713021 73713100 -27667421 - L2 LINE L2 0 3272 3189 265 363 15 7 chr15 73714305 73714440 -27666081 + MIR3 SINE MIR 11 146 -62 211 250 17 0 chr15 73714938 73714998 -27665523 - MIR SINE MIR -62 146 86 331 286 134 0 chr15 73715015 73715186 -27665335 + MIR SINE MIR 19 212 -50 195 318 40 24 chr15 73715405 73715531 -27664990 - L2 LINE L2 -2 3311 3184 2223 128 10 0 chr15 73715735 73716039 -27664482 - 7SLRNA srpRNA srpRNA -13 307 1 6308 128 27 10 chr15 73716044 73716171 -27664350 - L1MA5 LINE L1 -2 6298 6175 2290 117 3 0 chr15 73716171 73716480 -27664041 - AluSx SINE Alu -2 310 1 6308 128 27 10 chr15 73716480 73717609 -27662912 - L1MA5 LINE L1 -125 6175 5024 276 100 0 0 chr15 73717613 73717653 -27662868 + (T)n Simple_repeat Simple_repeat 1 40 0 244 23 0 70 chr15 73719521 73719564 -27660957 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 614 190 0 16 chr15 73720540 73720661 -27659860 + FLAM_A SINE Alu 1 119 -14 505 100 12 12 chr15 73720675 73720755 -27659766 + MADE1 DNA Mariner 1 80 0 603 209 66 46 chr15 73720771 73720967 -27659554 - MIR SINE MIR 0 262 63 243 88 0 0 chr15 73721021 73721055 -27659466 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 912 260 180 19 chr15 73721064 73721731 -27658790 - L2 LINE L2 -20 3293 2516 205 150 25 0 chr15 73721914 73721954 -27658567 + MER91C DNA MER1_type 36 76 -64 223 286 24 36 chr15 73722539 73722623 -27657898 - MIR3 SINE MIR -15 193 111 2059 92 60 3 chr15 73722785 73723069 -27657452 - AluSp SINE Alu -13 300 1 942 170 31 49 chr15 73723107 73723330 -27657191 + MER20B DNA MER1_type 1 219 0 546 215 208 7 chr15 73723341 73723485 -27657036 + MER5B DNA MER1_type 6 178 0 26 64 0 0 chr15 73723890 73723937 -27656584 + AT_rich Low_complexity Low_complexity 1 47 0 443 248 62 16 chr15 73724248 73724376 -27656145 - MER20B DNA MER1_type 0 783 650 559 279 154 13 chr15 73724376 73724766 -27655755 + LTR33 LTR ERVL 1 445 -76 1326 244 174 30 chr15 73724823 73725187 -27655334 - MER20B DNA MER1_type -129 654 205 3730 100 4 28 chr15 73725187 73725727 -27654794 + MER1A DNA MER1_type 1 527 0 1326 244 174 30 chr15 73725727 73725834 -27654687 - MER20B DNA MER1_type -578 205 115 324 0 0 0 chr15 73725841 73725877 -27654644 + (TG)n Simple_repeat Simple_repeat 1 36 0 2240 104 0 0 chr15 73725877 73726156 -27654365 - AluSx SINE Alu -33 279 1 314 162 44 0 chr15 73726413 73726481 -27654040 - L1MB7 LINE L1 0 6184 6114 1749 77 4 35 chr15 73726486 73726747 -27653774 + L1MA1 LINE L1 6050 6302 0 4335 161 49 28 chr15 73726767 73727945 -27652576 - L1MB8 LINE L1 -53 6125 4752 282 296 74 19 chr15 73728365 73728473 -27652048 - L2 LINE L2 -2 3270 3157 1916 154 0 32 chr15 73728473 73728785 -27651736 - AluJo SINE Alu -10 302 1 256 83 0 0 chr15 73729955 73729991 -27650530 + L1MC1 LINE L1 5925 5960 -2035 * 3657 148 55 57 chr15 73729990 73730218 -27650303 + L1MB3 LINE L1 5407 5634 -549 2793 32 0 0 chr15 73730218 73730529 -27649992 + AluY SINE Alu 1 311 0 351 0 0 0 chr15 73730530 73730569 -27649952 + (TA)n Simple_repeat Simple_repeat 1 39 0 3657 148 55 57 chr15 73730569 73730891 -27649630 + L1MB3 LINE L1 5634 5955 -228 2456 89 0 0 chr15 73730891 73731195 -27649326 + AluSq SINE Alu 1 304 -9 3657 148 55 57 chr15 73731195 73731206 -27649315 + L1MB3 LINE L1 5955 5965 -218 2149 106 10 3 chr15 73731206 73731498 -27649023 + AluSq SINE Alu 1 294 -19 3657 148 55 57 chr15 73731498 73731703 -27648818 + L1MB3 LINE L1 5965 6175 -8 1920 145 28 63 chr15 73731707 73732106 -27648415 + L1MC1 LINE L1 5944 6328 -5 435 289 136 68 chr15 73732588 73732927 -27647594 - MLT1I LTR MaLR -4 405 44 2484 74 0 3 chr15 73733436 73733748 -27646773 + AluY SINE Alu 1 311 0 1985 161 0 0 chr15 73737363 73737655 -27642866 - AluSx SINE Alu -20 292 1 183 300 217 17 chr15 73737724 73737844 -27642677 - L3 LINE CR1 -96 1481 1338 329 289 10 0 chr15 73740093 73740190 -27640331 - MER103 DNA DNA -8 158 61 1974 218 141 15 chr15 73740199 73740798 -27639723 - L1ME2 LINE L1 -15 6149 5474 562 183 92 0 chr15 73740877 73740997 -27639524 - FLAM_A SINE Alu -2 131 1 1896 159 127 43 chr15 73741951 73742417 -27638104 - MLT1D LTR MaLR 0 505 1 2065 141 20 0 chr15 73742508 73742812 -27637709 - AluSx SINE Alu -2 310 1 264 272 39 11 chr15 73743025 73743196 -27637325 + L1M4 LINE L1 2208 2390 -3756 342 286 134 14 chr15 73743314 73743531 -27636990 + L1M4 LINE L1 2593 2835 -3311 918 143 0 0 chr15 73743613 73743746 -27636775 + FLAM_C SINE Alu 1 133 0 441 211 114 0 chr15 73743896 73744010 -27636511 - L2 LINE L2 0 3313 3187 2298 82 0 0 chr15 73744136 73744435 -27636086 + AluSg SINE Alu 1 299 0 245 262 13 98 chr15 73744516 73744741 -27635780 + L1M4 LINE L1 3256 3461 -2685 2096 130 0 0 chr15 73744746 73745030 -27635491 + AluSx SINE Alu 5 288 -24 2238 311 78 47 chr15 73745386 73746421 -27634100 + HERVL LTR ERVL 3547 4549 -1105 2205 116 0 3 chr15 73746421 73746722 -27633799 + AluSx SINE Alu 1 300 -12 2238 311 78 47 chr15 73746722 73747096 -27633425 + HERVL LTR ERVL 4549 4910 -744 1136 188 5 0 chr15 73747096 73747304 -27633217 - MER3 DNA MER1_type 0 209 1 2238 311 78 47 chr15 73747304 73747607 -27632914 + HERVL LTR ERVL 4910 5312 -342 23 0 0 0 chr15 73747644 73747667 -27632854 + AT_rich Low_complexity Low_complexity 1 23 0 1759 149 197 3 chr15 73747799 73748154 -27632367 - MSTB LTR MaLR -2 424 1 227 156 22 22 chr15 73748315 73748360 -27632161 + LTR67 LTR ERVL 513 557 0 916 103 0 0 chr15 73748477 73748603 -27631918 + L1MA6 LINE L1 6164 6289 -11 2320 112 0 6 chr15 73748706 73749020 -27631501 + AluSp SINE Alu 1 312 -1 2265 196 47 30 chr15 73749394 73749482 -27631039 - MER69 DNA AcHobo -5 2521 2436 2152 115 3 16 chr15 73749482 73749794 -27630727 + AluSx SINE Alu 1 308 -4 2265 196 47 30 chr15 73749794 73750276 -27630245 - MER69 DNA AcHobo -90 2436 1941 4461 201 62 36 chr15 73750283 73750624 -27629897 - MER69 DNA AcHobo -1452 1074 743 2230 129 3 0 chr15 73750624 73750935 -27629586 - AluJb SINE Alu 0 312 1 4461 201 62 36 chr15 73750935 73751580 -27628941 - MER69 DNA AcHobo -1783 743 63 338 269 158 8 chr15 73751729 73751894 -27628627 - MIR SINE MIR -63 145 1 203 273 173 9 chr15 73752090 73752200 -27628321 - MIR3 SINE MIR -77 131 4 354 168 139 10 chr15 73752210 73752311 -27628210 - MIR3 SINE MIR -21 187 74 384 228 91 128 chr15 73752914 73753139 -27627382 - L1MC4a LINE L1 -1630 6178 5969 2283 86 0 51 chr15 73753139 73753453 -27627068 - AluSx SINE Alu -14 298 1 384 228 91 128 chr15 73753453 73753578 -27626943 - L1MC4a LINE L1 -1839 5969 5841 514 161 0 11 chr15 73753615 73753702 -27626819 - AluJ/FLAM SINE Alu -226 86 1 1952 120 6 66 chr15 73754986 73755303 -27625218 - AluSx SINE Alu -14 298 1 341 80 40 0 chr15 73755476 73755526 -27624995 - Alu SINE Alu -7 294 243 1442 214 53 100 chr15 73755526 73755878 -27624643 + L1ME3A LINE L1 3914 4281 -1865 991 173 31 0 chr15 73755878 73756040 -27624481 + FAM SINE Alu 1 167 -8 1442 214 53 100 chr15 73756040 73756132 -27624389 + L1ME3A LINE L1 4281 4376 -1770 2487 89 0 13 chr15 73756132 73756448 -27624073 - AluSx SINE Alu 0 312 1 1442 214 53 100 chr15 73756448 73756661 -27623860 + L1ME3A LINE L1 4376 4541 -1605 * 1523 237 19 84 chr15 73756658 73756711 -27623810 + L1ME3A LINE L1 5690 5745 -425 2262 96 3 7 chr15 73756711 73757013 -27623508 + AluSp SINE Alu 1 301 -12 1523 237 19 84 chr15 73757013 73757473 -27623048 + L1ME3A LINE L1 5745 6170 0 2199 71 57 0 chr15 73757480 73757762 -27622759 + AluY SINE Alu 1 298 -13 2406 60 0 22 chr15 73757927 73758242 -27622279 - AluY SINE Alu -3 308 1 1299 208 56 0 chr15 73758287 73758537 -27621984 + Tigger7 DNA MER2_type 1 264 -2223 478 181 21 0 chr15 73758538 73758632 -27621889 + Tigger7 DNA MER2_type 2395 2490 -1 1031 116 0 6 chr15 73758641 73758822 -27621699 + (TA)n Simple_repeat Simple_repeat 1 180 0 227 265 72 0 chr15 73758838 73758921 -27621600 + L1MC4 LINE L1 6615 6703 -1339 * 259 154 0 46 chr15 73758880 73758936 -27621585 - L1MC4 LINE L1 -1340 6702 6648 2174 100 0 17 chr15 73758936 73759225 -27621296 - AluSx SINE Alu -24 288 5 547 211 68 8 chr15 73759241 73759374 -27621147 - MIR SINE MIR -108 154 14 268 193 18 0 chr15 73759870 73759927 -27620594 + L1ME4a LINE L1 5964 6021 -100 394 287 17 9 chr15 73760187 73760302 -27620219 - LTR67 LTR ERVL 0 557 442 412 314 88 29 chr15 73760407 73760681 -27619840 - LTR67 LTR ERVL -267 290 1 2640 33 33 0 chr15 73760760 73761059 -27619462 + AluY SINE Alu 1 309 -2 189 0 0 0 chr15 73761059 73761080 -27619441 + (TA)n Simple_repeat Simple_repeat 2 22 0 2286 164 75 24 chr15 73761077 73761402 -27619119 + L1MB3 LINE L1 5605 5912 -271 2490 86 0 0 chr15 73761402 73761706 -27618815 + AluSq SINE Alu 1 304 -9 2286 164 75 24 chr15 73761706 73761717 -27618804 + L1MB3 LINE L1 5912 5921 -262 2149 106 10 3 chr15 73761717 73762009 -27618512 + AluSq SINE Alu 1 294 -19 2286 164 75 24 chr15 73762009 73762214 -27618307 + L1MB3 LINE L1 5921 6175 -8 1871 143 28 63 chr15 73762218 73762617 -27617904 + L1MC1 LINE L1 5944 6328 -5 353 263 130 37 chr15 73763099 73763440 -27617081 - MLT1J2 LTR MaLR -4 408 41 2438 74 0 3 chr15 73763947 73764258 -27616263 + AluY SINE Alu 1 310 -1 1990 161 0 0 chr15 73767873 73768165 -27612356 - AluSx SINE Alu -20 292 1 1754 176 28 3 chr15 73768172 73768461 -27612060 - AluJo SINE Alu -16 296 1 4842 80 25 29 chr15 73769643 73770354 -27610167 + L1MA2 LINE L1 5542 6251 -53 2375 51 41 3 chr15 73770354 73770649 -27609872 + AluY SINE Alu 1 306 -5 4842 80 25 29 chr15 73770649 73770699 -27609822 + L1MA2 LINE L1 6251 6300 -4 455 238 74 16 chr15 73771044 73771166 -27609355 + MIR SINE MIR 25 153 -109 481 212 115 0 chr15 73771307 73771420 -27609101 + FLAM_A SINE Alu 5 130 -3 1798 177 0 3 chr15 73771691 73771974 -27608547 - AluSx SINE Alu -30 282 1 1319 66 48 0 chr15 73773323 73773490 -27607031 + AluSx SINE Alu 17 191 -121 2157 107 0 3 chr15 73773590 73773881 -27606640 - AluSx SINE Alu -22 290 1 2521 211 36 9 chr15 73773881 73774520 -27606001 - L1 LINE L1 -3105 3041 2386 * 28082 70 6 5 chr15 73774513 73779329 -27601192 - L1PA6 LINE L1 -2 6152 1332 2143 121 0 41 chr15 73779502 73779817 -27600704 + AluSx SINE Alu 1 302 -10 712 148 0 19 chr15 73780050 73780158 -27600363 - FLAM_A SINE Alu -14 128 23 423 0 0 0 chr15 73781085 73781132 -27599389 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 852 215 19 0 chr15 73781135 73781293 -27599228 - AluJ SINE Alu -30 282 122 753 147 17 0 chr15 73781363 73781479 -27599042 - AluJ SINE Alu -184 118 1 563 292 7 13 chr15 73781488 73781642 -27598879 - MIR SINE MIR -109 153 1 829 128 40 7 chr15 73781746 73781895 -27598626 + L1MB2 LINE L1 5994 6147 -24 1083 194 0 0 chr15 73781895 73782106 -27598415 + MER2 DNA MER2_type 1 211 -134 387 152 0 76 chr15 73782301 73782406 -27598115 + L1MA4 LINE L1 6199 6295 -5 1898 158 30 0 chr15 73782656 73782954 -27597567 + AluJb SINE Alu 1 307 -5 620 202 0 0 chr15 73782959 73783083 -27597438 + L1MB2 LINE L1 5546 5669 -514 632 176 67 0 chr15 73783094 73783213 -27597308 - MER46A DNA MER2_type -109 127 1 1893 141 26 11 chr15 73783213 73783561 -27596960 + L1MB2 LINE L1 5786 6138 -33 1247 195 32 65 chr15 73783567 73783702 -27596819 + MER2 DNA MER2_type 1 139 -206 2075 130 23 49 chr15 73783702 73784048 -27596473 + MER1B DNA MER1_type 1 337 0 1247 195 32 65 chr15 73784048 73784251 -27596270 + MER2 DNA MER2_type 139 328 -17 2248 79 3 10 chr15 73785030 73785321 -27595200 - AluSg SINE Alu -21 289 1 344 222 192 0 chr15 73785352 73785451 -27595070 + L2 LINE L2 3192 3309 -4 344 190 146 15 chr15 73785596 73785733 -27594788 - MER113 DNA MER1_type? -350 171 17 2129 127 7 0 chr15 73785922 73786221 -27594300 + AluSq SINE Alu 1 301 -12 489 230 254 0 chr15 73786305 73786470 -27594051 - MIR SINE MIR -27 235 29 222 341 174 7 chr15 73786624 73786762 -27593759 + MIR3 SINE MIR 10 170 -38 532 224 133 18 chr15 73787300 73787465 -27593056 + MIR3 SINE MIR 23 206 -2 334 287 108 75 chr15 73788230 73788537 -27591984 + L1M2 LINE L1 884 1200 -5649 * 351 290 72 105 chr15 73788321 73788873 -27591648 - L1M2 LINE L1 -5523 1326 793 663 274 54 46 chr15 73789106 73789347 -27591174 + MIR SINE MIR 19 261 -1 325 226 12 12 chr15 73791731 73791815 -27588706 - MER94 DNA DNA -50 84 1 317 200 297 24 chr15 73792044 73792209 -27588312 - MARNA DNA Mariner -361 225 16 1611 149 0 36 chr15 73792406 73792682 -27587839 + AluJb SINE Alu 1 266 -46 240 240 40 30 chr15 73792772 73792872 -27587649 - HAL1b LINE L1 -57 1291 1191 293 158 18 0 chr15 73792885 73792942 -27587579 - MLT1A1 LTR MaLR 0 457 400 279 127 45 45 chr15 73792977 73793087 -27587434 + (TTTA)n Simple_repeat Simple_repeat 1 110 0 * 309 179 58 17 chr15 73793029 73793202 -27587319 + (TA)n Simple_repeat Simple_repeat 1 180 0 1138 157 37 128 chr15 73793231 73793582 -27586939 - MLT1A1 LTR MaLR -46 319 1 686 260 53 14 chr15 73794141 73794502 -27586019 - L1M4 LINE L1 -3441 2705 2331 2328 125 0 0 chr15 73794570 73794882 -27585639 - AluSx SINE Alu 0 312 1 1582 247 63 99 chr15 73794925 73795985 -27584536 + L1M4 LINE L1 4038 5058 -1088 2080 82 0 102 chr15 73795985 73796327 -27584194 + AluSc SINE Alu 1 307 -2 1582 247 63 99 chr15 73796327 73796362 -27584159 + L1M4 LINE L1 5058 5093 -1053 2286 105 0 3 chr15 73796375 73796679 -27583842 - AluSq SINE Alu -10 303 1 4778 167 17 34 chr15 73796731 73797479 -27583042 + L1MB4 LINE L1 4753 5477 -703 423 74 37 0 chr15 73797479 73797560 -27582961 + (TA)n Simple_repeat Simple_repeat 1 84 0 4778 167 17 34 chr15 73797560 73798252 -27582269 + L1MB4 LINE L1 5477 6180 0 1868 291 71 36 chr15 73798338 73799264 -27581257 + HERVL LTR ERVL 2396 3096 -1900 526 315 63 20 chr15 73799305 73799559 -27580962 + HERVL LTR ERVL 4690 4954 -700 636 276 87 15 chr15 73800243 73800507 -27580014 + LTR16A1 LTR ERVL 175 457 0 253 321 184 30 chr15 73800818 73800986 -27579535 + L3 LINE CR1 1338 1531 -46 2126 139 0 0 chr15 73801007 73801317 -27579204 + AluSx SINE Alu 1 310 -2 1729 290 78 28 chr15 73801805 73802356 -27578165 + HERVL LTR ERVL 4481 5092 -672 2273 124 0 0 chr15 73802356 73802663 -27577858 + AluSx SINE Alu 1 307 -5 1729 290 78 28 chr15 73802663 73802966 -27577555 + HERVL LTR ERVL 5092 5378 -386 418 184 0 88 chr15 73803595 73803709 -27576812 + LTR67 LTR ERVL 360 463 -94 2990 164 32 78 chr15 73803710 73804468 -27576053 - MER52A LTR ERV1 0 1755 1033 909 260 89 31 chr15 73804469 73804819 -27575702 - HERVL LTR ERVL -1024 4630 4261 557 294 19 0 chr15 73804864 73805024 -27575497 - HERVL LTR ERVL -1462 4192 4030 2086 116 0 0 chr15 73805050 73805334 -27575187 - AluY SINE Alu -27 284 1 651 270 89 30 chr15 73805422 73805844 -27574677 - HERVL LTR ERVL -1914 3850 3355 490 282 165 0 chr15 73805913 73806101 -27574420 - HERVL LTR ERVL -2517 3247 3029 1035 179 22 45 chr15 73806159 73806382 -27574139 - MER20 DNA MER1_type -1 218 1 1454 296 89 24 chr15 73806426 73807057 -27573464 - HERVL LTR ERVL -2843 2811 2140 1222 318 44 4 chr15 73807178 73807681 -27572840 - HERVL LTR ERVL -3748 2016 1494 24 0 0 0 chr15 73807907 73807931 -27572590 + AT_rich Low_complexity Low_complexity 1 24 0 2041 101 0 18 chr15 73807939 73808249 -27572272 + AluSg SINE Alu 2 306 0 2183 97 0 14 chr15 73808382 73808710 -27571811 - AluSx SINE Alu 0 324 1 2342 87 3 3 chr15 73809000 73809300 -27571221 - AluY SINE Alu -11 300 1 230 169 17 51 chr15 73809533 73809592 -27570929 + MIR SINE MIR 135 191 -71 534 242 45 6 chr15 73809619 73809776 -27570745 - MIR SINE MIR -18 244 82 211 244 0 0 chr15 73809900 73809941 -27570580 + MIR SINE MIR 208 248 -14 382 264 159 12 chr15 73809962 73810125 -27570396 + MIR SINE MIR 3 189 -73 261 0 0 0 chr15 73810134 73810163 -27570358 + (TG)n Simple_repeat Simple_repeat 2 30 0 932 243 103 23 chr15 73810506 73810575 -27569946 - MLT1I LTR MaLR -10 399 337 2177 133 30 16 chr15 73810575 73810943 -27569578 - THE1C LTR MaLR 0 375 3 932 243 103 23 chr15 73810943 73811174 -27569347 - MLT1I LTR MaLR -72 337 75 3801 179 92 21 chr15 73811258 73811793 -27568728 + L1MB8 LINE L1 5308 5921 -257 2314 85 0 3 chr15 73811793 73812088 -27568433 - AluY SINE Alu -15 296 3 3801 179 92 21 chr15 73812088 73812360 -27568161 + L1MB8 LINE L1 5921 6172 -6 653 321 95 32 chr15 73812412 73812814 -27567707 - L2 LINE L2 -989 2325 1950 2234 77 7 23 chr15 73812814 73813113 -27567408 - AluSc SINE Alu -15 294 1 2094 106 0 53 chr15 73813117 73813439 -27567082 - AluSx SINE Alu -7 305 1 653 321 95 32 chr15 73813439 73813686 -27566835 - L2 LINE L2 -1366 1948 1630 392 265 86 101 chr15 73813695 73813821 -27566700 + L2 LINE L2 3049 3175 -138 2118 151 89 0 chr15 73813821 73814191 -27566330 - MER57A LTR ERV1 0 403 1 392 265 86 101 chr15 73814191 73814332 -27566189 + L2 LINE L2 3175 3312 -1 309 293 80 37 chr15 73816105 73816293 -27564228 - MIR SINE MIR -65 197 2 514 277 154 5 chr15 73816480 73816675 -27563846 + MIR SINE MIR 29 252 -10 1773 200 22 8 chr15 73816728 73817088 -27563433 - MLT1A1 LTR MaLR 0 365 1 2299 102 0 13 chr15 73817360 73817664 -27562857 - AluSx SINE Alu -12 300 1 1662 207 65 3 chr15 73817951 73818304 -27562217 - L1PA16 LINE L1 -10 6156 5782 2288 84 0 7 chr15 73818895 73819191 -27561330 + AluY SINE Alu 1 294 -17 2193 118 0 0 chr15 73819350 73819647 -27560874 + AluSx SINE Alu 1 297 -15 4573 183 119 34 chr15 73819735 73820611 -27559910 + L1MC4 LINE L1 6796 7737 -258 1943 156 30 0 chr15 73820611 73820913 -27559608 - AluJb SINE Alu -1 311 1 4573 183 119 34 chr15 73820913 73821197 -27559324 + L1MC4 LINE L1 7737 7995 0 1849 167 20 13 chr15 73821570 73821911 -27558610 - AluJo SINE Alu 0 343 1 188 315 0 34 chr15 73821916 73822005 -27558516 - MIR SINE MIR -70 192 107 231 204 41 0 chr15 73822478 73822527 -27557994 + MIR SINE MIR 100 150 -58 207 0 0 0 chr15 73822644 73822667 -27557854 + (T)n Simple_repeat Simple_repeat 1 23 0 6478 165 20 23 chr15 73823044 73824215 -27556306 - L1P LINE L1 -4968 1178 11 4874 83 14 5 chr15 73824228 73824893 -27555628 - L1PA13 LINE L1 0 6163 5493 2237 113 0 13 chr15 73824893 73825204 -27555317 - AluSx SINE Alu -4 308 2 715 113 50 35 chr15 73825413 73825554 -27554967 + L1P5 LINE L1 5623 5765 -391 303 202 111 0 chr15 73825555 73825654 -27554867 - L1M1 LINE L1 -4542 3023 2914 1832 158 0 4 chr15 73825671 73825950 -27554571 + AluJb SINE Alu 7 284 -28 195 42 0 0 chr15 73825950 73825974 -27554547 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 571 276 110 4 chr15 73826023 73826251 -27554270 - L2 LINE L2 -344 2970 2719 2503 156 39 34 chr15 73826262 73826770 -27553751 - L1MB8 LINE L1 -5 6173 5663 180 0 0 0 chr15 73826907 73826927 -27553594 + (TTG)n Simple_repeat Simple_repeat 2 21 0 363 236 241 10 chr15 73827116 73827319 -27553202 - MER112 DNA MER1_type -6 254 5 206 238 0 0 chr15 73827667 73827709 -27552812 + T-rich Low_complexity Low_complexity 3 44 0 354 273 0 45 chr15 73827829 73827939 -27552582 - MER115 DNA AcHobo 0 693 589 245 298 0 0 chr15 73828408 73828465 -27552056 - Zaphod DNA AcHobo -3951 80 24 2541 63 0 0 chr15 73828486 73828787 -27551734 + AluY SINE Alu 1 301 -10 268 231 43 77 chr15 73828914 73829024 -27551497 - L1MEc LINE L1 -4702 1694 1587 1455 189 29 32 chr15 73829024 73829337 -27551184 - AluJo SINE Alu 0 312 1 238 231 188 83 chr15 73829389 73829544 -27550977 - L1MC4a LINE L1 -1607 6201 6064 3805 153 31 39 chr15 73829544 73830054 -27550467 - L1MB3 LINE L1 0 6183 5679 1886 170 3 3 chr15 73830054 73830360 -27550161 + AluSx SINE Alu 1 306 -6 3805 153 31 39 chr15 73830360 73830586 -27549935 - L1MB3 LINE L1 -504 5679 5453 238 231 188 83 chr15 73830586 73830803 -27549718 - L1MC4a LINE L1 -1744 6064 5790 256 269 219 6 chr15 73831455 73831615 -27548906 - L2 LINE L2 0 3313 3120 582 322 89 33 chr15 73831776 73832136 -27548385 - MLT1K LTR MaLR -106 482 103 268 342 87 12 chr15 73832217 73832378 -27548143 - L2 LINE L2 -295 2977 2805 432 251 203 4 chr15 73832378 73832632 -27547889 - L1MC4a LINE L1 -566 5596 5293 894 142 0 22 chr15 73832669 73832803 -27547718 - FLAM_C SINE Alu -1 132 2 447 276 97 21 chr15 73832817 73833096 -27547425 - L1MC4a LINE L1 -840 5306 5007 311 237 92 53 chr15 73833065 73833196 -27547325 - L1MC4 LINE L1 0 8042 7907 * 226 222 0 0 chr15 73833357 73833402 -27547119 + (CATA)n Simple_repeat Simple_repeat 4 48 0 3077 204 176 9 chr15 73833404 73834224 -27546297 - L1MC4 LINE L1 -124 7918 6928 1601 136 110 4 chr15 73834224 73834496 -27546025 - AluJo SINE Alu -11 301 1 3077 204 176 9 chr15 73834496 73834587 -27545934 - L1MC4 LINE L1 -1114 6928 6854 739 183 243 93 chr15 73834587 73834954 -27545567 - L1MC4a LINE L1 -1979 4167 3746 460 171 0 0 chr15 73834992 73835074 -27545447 - AluS SINE Alu 0 312 231 1509 160 51 34 chr15 73835074 73835430 -27545091 + pTR5 LTR ERV1 745 1106 -1332 261 98 0 0 chr15 73835567 73835608 -27544913 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 742 155 17 0 chr15 73835825 73835941 -27544580 - FLAM_C SINE Alu -15 118 1 491 299 7 13 chr15 73835950 73836104 -27544417 - MIR SINE MIR -109 153 1 819 178 0 7 chr15 73836208 73836354 -27544167 + L1MB2 LINE L1 5994 6138 -33 779 183 36 7 chr15 73836360 73836495 -27544026 + MER2 DNA MER2_type 1 139 -206 1520 102 11 25 chr15 73836495 73836765 -27543756 + MER1B DNA MER1_type 1 113 -105 2009 123 0 3 chr15 73836869 73837153 -27543368 - AluSq SINE Alu -30 283 1 4323 172 39 13 chr15 73837205 73838492 -27542029 + L1MB4 LINE L1 4753 6066 -114 357 226 12 12 chr15 73839658 73839742 -27540779 - MER94 DNA DNA -50 84 1 385 200 297 24 chr15 73839971 73840136 -27540385 - MARNA DNA Mariner -361 225 16 1993 141 7 7 chr15 73840335 73840634 -27539887 + AluSx SINE Alu 3 301 -11 293 256 41 50 chr15 73840642 73840763 -27539758 + L1MEc LINE L1 1575 1694 -4702 2541 63 0 0 chr15 73840890 73841191 -27539330 - AluY SINE Alu -10 301 1 2220 252 6 0 chr15 73891760 73892229 -27488292 - L1PA13 LINE L1 -6315 472 1 430 209 30 13 chr15 73892508 73892647 -27487874 - L1MA10 LINE L1 -9 6281 6018 1746 223 36 9 chr15 73892772 73893193 -27487328 - MSTB1 LTR MaLR 0 432 1 189 175 0 0 chr15 73893233 73893273 -27487248 + (TTA)n Simple_repeat Simple_repeat 3 42 0 417 309 7 0 chr15 73893274 73893423 -27487098 - L1MEc LINE L1 -3878 2947 2798 1442 279 54 3 chr15 73894695 73895085 -27485436 - MER70A LTR ERVL -40 432 23 1694 128 89 0 chr15 73895140 73895398 -27485123 + AluSx SINE Alu 19 299 -13 2375 207 79 23 chr15 73895634 73896292 -27484229 - L1MEc LINE L1 -4488 2158 1464 2030 167 0 0 chr15 73896296 73896608 -27483913 - AluSx SINE Alu 0 312 1 354 107 36 0 chr15 73896616 73896672 -27483849 - L1MEc LINE L1 -5334 1208 1151 1556 250 29 10 chr15 73896788 73897172 -27483349 - L1MEc LINE L1 -5678 864 474 232 278 28 14 chr15 73897503 73897575 -27482946 + L2 LINE L2 3196 3268 -4 2038 137 3 10 chr15 73898417 73898716 -27481805 - AluSx SINE Alu -15 297 1 22 0 0 0 chr15 73899013 73899035 -27481486 + AT_rich Low_complexity Low_complexity 1 22 0 4497 176 40 35 chr15 73900415 73901263 -27479258 - MER21B LTR ERV1 -11 852 1 524 261 72 14 chr15 73901339 73901546 -27478975 + HAL1 LINE L1 4 222 -2285 860 261 165 46 chr15 73901576 73902098 -27478423 - MLT1G1 LTR MaLR -9 586 3 5437 195 52 11 chr15 73902437 73904134 -27476387 + L1MA9 LINE L1 4045 5835 -477 198 0 0 0 chr15 73904134 73904156 -27476365 + (TG)n Simple_repeat Simple_repeat 2 23 0 5437 195 52 11 chr15 73904156 73904431 -27476090 + L1MA9 LINE L1 5835 6097 -215 564 283 91 10 chr15 73904662 73904860 -27475661 + MIR SINE MIR 13 226 -36 921 263 72 87 chr15 73904905 73905022 -27475499 - MLT1F LTR MaLR -7 535 418 1650 194 3 3 chr15 73905022 73905315 -27475206 - AluJo SINE Alu -19 293 1 921 263 72 87 chr15 73905315 73905342 -27475179 - MLT1F LTR MaLR -124 418 392 2169 91 37 3 chr15 73905342 73905640 -27474881 - AluSx SINE Alu -4 308 1 921 263 72 87 chr15 73905640 73906037 -27474484 - MLT1F LTR MaLR -150 392 1 196 351 26 0 chr15 73906526 73906603 -27473918 - L3 LINE CR1 -3 1574 1496 387 301 41 69 chr15 73906649 73906860 -27473661 - MIR SINE MIR -42 220 18 673 273 118 21 chr15 73907310 73907548 -27472973 - MIR SINE MIR 0 262 2 472 218 32 0 chr15 73907996 73908013 -27472508 - L1MA10 LINE L1 -2 6332 6316 1807 252 71 23 chr15 73908013 73908672 -27471849 - L1ME2 LINE L1 -13 6151 5461 568 183 56 21 chr15 73908708 73908850 -27471671 - L1MB3 LINE L1 -2 6181 6035 1590 21 0 11 chr15 73908989 73909179 -27471342 + L1PA2 LINE L1 5968 6155 0 24 0 0 0 chr15 73909179 73909203 -27471318 + AT_rich Low_complexity Low_complexity 1 24 0 5725 199 48 30 chr15 73909213 73910842 -27469679 + L1MB7 LINE L1 3704 5393 -791 2291 87 0 26 chr15 73910842 73911151 -27469370 + AluY SINE Alu 1 301 -10 5725 199 48 30 chr15 73911151 73911639 -27468882 + L1MB7 LINE L1 5393 5870 -314 639 202 0 0 chr15 73911660 73911764 -27468757 - FLAM_A SINE Alu -23 119 16 680 336 72 34 chr15 73912786 73912858 -27467663 - L2 LINE L2 -50 3222 3154 1763 171 48 17 chr15 73912858 73913209 -27467312 + MLT1A1 LTR MaLR 1 362 -3 680 336 72 34 chr15 73913209 73913751 -27466770 - L2 LINE L2 -118 3154 2555 23 0 0 0 chr15 73914617 73914640 -27465881 + AT_rich Low_complexity Low_complexity 1 23 0 1850 146 38 0 chr15 73914781 73915069 -27465452 - AluSx SINE Alu -13 299 1 308 355 39 94 chr15 73915849 73916255 -27464266 - L1ME LINE L1 -5598 472 89 1469 258 103 68 chr15 73916324 73916833 -27463688 + L1M4 LINE L1 2692 3182 -2964 278 132 0 0 chr15 73916833 73916871 -27463650 - U2 snRNA snRNA -150 38 1 1469 258 103 68 chr15 73916871 73917321 -27463200 + L1M4 LINE L1 3182 3732 -2414 2458 50 0 10 chr15 73917321 73917620 -27462901 - AluY SINE Alu -15 296 1 1469 258 103 68 chr15 73917620 73917714 -27462807 + L1M4 LINE L1 3732 3821 -2325 24 32 0 0 chr15 73918045 73918076 -27462445 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr15 73918253 73918276 -27462245 + AT_rich Low_complexity Low_complexity 1 23 0 421 193 98 92 chr15 73918402 73918605 -27461916 + L1MC5 LINE L1 7610 7817 -144 611 151 92 8 chr15 73918605 73918724 -27461797 + FLAM_A SINE Alu 1 129 -4 421 193 98 92 chr15 73918724 73918826 -27461695 + L1MC5 LINE L1 7817 7917 -44 22 0 0 0 chr15 73918924 73918946 -27461575 + AT_rich Low_complexity Low_complexity 1 22 0 680 205 0 42 chr15 73919191 73919381 -27461140 - L1MB8 LINE L1 0 6178 5997 1217 222 90 3 chr15 73919396 73919938 -27460583 - L1MB8 LINE L1 -743 5403 4901 285 188 13 2 chr15 73919943 73920184 -27460337 + AluJo SINE Alu 1 302 0 2971 222 68 45 chr15 73920189 73921221 -27459300 - L1MB8 LINE L1 -1248 4898 3844 2268 107 0 0 chr15 73921221 73921520 -27459001 - AluSg SINE Alu -11 299 1 36506 94 11 8 chr15 73921526 73927652 -27452869 - L1PA6 LINE L1 -1 6153 11 1161 283 47 27 chr15 73927664 73928218 -27452303 - L1MB8 LINE L1 -2293 3853 3289 635 234 161 21 chr15 73928208 73928741 -27451780 - L1MB8 LINE L1 -3335 2811 2204 * 232 292 11 0 chr15 73928806 73928895 -27451626 + (CATATA)n Simple_repeat Simple_repeat 6 95 0 249 83 0 0 chr15 73928895 73928931 -27451590 + (CA)n Simple_repeat Simple_repeat 2 37 0 1381 208 96 21 chr15 73928971 73929408 -27451113 - L1MDa LINE L1 -3960 2580 2111 1705 146 26 57 chr15 73929427 73929777 -27450744 + MER47A DNA MER2_type 27 365 -1 1046 269 30 117 chr15 73929777 73929846 -27450675 - L1MDa LINE L1 -4441 2099 2026 1845 153 17 0 chr15 73929846 73930147 -27450374 - AluSq SINE Alu -7 306 1 1046 269 30 117 chr15 73930147 73930696 -27449825 - L1MDa LINE L1 -4514 2026 1424 885 319 122 21 chr15 73930879 73931590 -27448931 - L1MDa LINE L1 -5897 643 17 881 289 22 0 chr15 73931970 73932202 -27448319 + MIR SINE MIR 26 262 0 233 254 95 0 chr15 73932205 73932268 -27448253 + MIR SINE MIR 86 154 -108 1704 223 115 24 chr15 73932824 73933442 -27447079 - L1MC4 LINE L1 -21 8021 7348 198 217 22 22 chr15 73935374 73935420 -27445101 + L2 LINE L2 3255 3300 -13 26 50 0 0 chr15 73935920 73935960 -27444561 + AT_rich Low_complexity Low_complexity 1 40 0 216 276 17 0 chr15 73935986 73936044 -27444477 - MIR SINE MIR -63 145 87 408 303 0 0 chr15 73936161 73936260 -27444261 - MER117 DNA MER1_type -97 100 2 284 175 136 12 chr15 73937173 73937188 -27443333 - L1ME2 LINE L1 -225 5941 5929 6774 43 4 101 chr15 73937188 73938094 -27442427 - L1PA6 LINE L1 0 6154 5323 2333 80 3 3 chr15 73938094 73938396 -27442125 - AluY SINE Alu -9 302 1 6774 43 4 101 chr15 73938396 73938528 -27441993 - L1PA6 LINE L1 -831 5323 5180 284 175 136 12 chr15 73938528 73938745 -27441776 - L1ME2 LINE L1 -237 5929 5635 * 397 284 24 0 chr15 73938742 73938869 -27441652 - L1MEc LINE L1 -3506 2709 2580 2588 178 93 14 chr15 73938869 73939460 -27441061 - L1MB7 LINE L1 -9 6175 5538 819 223 170 0 chr15 73939460 73939963 -27440558 - L1MEc LINE L1 -3626 2589 2030 234 284 97 19 chr15 73940228 73940383 -27440138 - MIR SINE MIR -95 167 1 785 131 0 36 chr15 73940919 73941056 -27439465 + FLAM_C SINE Alu 1 132 -1 2164 103 0 0 chr15 73941162 73941488 -27439033 + AluSg SINE Alu 1 326 0 4314 238 88 33 chr15 73943462 73944605 -27435916 + L1M2 LINE L1 971 2050 -4332 1456 199 3 31 chr15 73944605 73944892 -27435629 + AluJo SINE Alu 1 279 -33 4314 238 88 33 chr15 73944892 73946676 -27433845 + L1M2 LINE L1 2050 3860 -2522 303 164 18 18 chr15 73946687 73946742 -27433779 + MER21B LTR ERV1 12 66 -797 326 316 0 0 chr15 73946778 73946854 -27433667 + MER21B LTR ERV1 19 94 -769 * 2584 217 83 12 chr15 73946852 73947560 -27432961 + MER21B LTR ERV1 43 862 -1 1730 216 16 0 chr15 73947572 73947951 -27432570 + L1M2 LINE L1 3858 4242 -2140 1060 268 33 27 chr15 73947952 73948284 -27432237 + MSTD LTR MaLR 1 334 -62 7451 220 43 9 chr15 73948392 73950313 -27430208 - L1MB7 LINE L1 -743 5403 3418 4067 237 121 17 chr15 73950319 73951760 -27428761 - L1M4 LINE L1 -1165 4981 3391 4139 228 87 13 chr15 73951775 73952244 -27428277 - L1M4 LINE L1 -746 5400 4967 2454 65 3 0 chr15 73952244 73952554 -27427967 + AluSp SINE Alu 1 311 -2 4139 228 87 13 chr15 73952554 73952606 -27427915 - L1M4 LINE L1 -1179 4967 4920 2273 114 25 112 chr15 73952606 73953027 -27427494 - MSTB1 LTR MaLR 0 432 55 2135 109 0 0 chr15 73953027 73953311 -27427210 - AluSc SINE Alu -25 284 1 2273 114 25 112 chr15 73953311 73953362 -27427159 - MSTB1 LTR MaLR -377 55 1 4139 228 87 13 chr15 73953362 73954135 -27426386 - L1M4 LINE L1 -1226 4920 4009 260 259 0 0 chr15 73954137 73954191 -27426330 - MER2 DNA MER2_type 0 345 292 568 158 0 0 chr15 73954234 73954316 -27426205 - MER2 DNA MER2_type -262 83 2 685 218 6 0 chr15 73954318 73954488 -27426033 - L1M4 LINE L1 -2139 4007 3837 227 228 101 0 chr15 73954488 73954567 -27425954 - L1MEc LINE L1 -6271 125 39 5023 158 46 25 chr15 73954942 73955049 -27425472 - L1PA16 LINE L1 -1 6165 6062 276 30 0 0 chr15 73955049 73955082 -27425439 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1935 96 0 33 chr15 73955082 73955354 -27425167 - AluSx SINE Alu -28 284 22 5023 158 46 25 chr15 73955354 73957127 -27423394 - L1PA16 LINE L1 -103 6063 4247 524 311 54 25 chr15 73957338 73957579 -27422942 + MIR SINE MIR 7 254 -8 23 0 0 0 chr15 73957669 73957692 -27422829 + AT_rich Low_complexity Low_complexity 1 23 0 282 73 0 0 chr15 73958025 73958066 -27422455 + (T)n Simple_repeat Simple_repeat 1 41 0 1749 261 112 17 chr15 73959189 73960207 -27420314 - HAL1b LINE L1 -3 1345 214 1542 195 7 7 chr15 73960366 73960648 -27419873 - AluJo SINE Alu -30 282 1 2900 197 28 0 chr15 73960779 73961295 -27419226 + Tigger7 DNA MER2_type 1 531 -1956 1443 165 17 0 chr15 73961295 73961530 -27418991 + MER2 DNA MER2_type 2 240 -105 2249 150 25 47 chr15 73961530 73961977 -27418544 + Tigger1 DNA MER2_type 1 437 -1981 681 79 0 40 chr15 73961978 73962079 -27418442 - AluY SINE Alu -17 294 198 660 131 9 0 chr15 73962081 73962188 -27418333 + Tigger1 DNA MER2_type 426 533 -1885 941 207 67 10 chr15 73962188 73962396 -27418125 + AluJo SINE Alu 87 306 -6 11815 133 17 8 chr15 73962396 73963656 -27416865 + Tigger1 DNA MER2_type 524 1808 -610 998 98 4 183 chr15 73963656 73963891 -27416630 - 7SK RNA RNA 0 193 1 11815 133 17 8 chr15 73963891 73964508 -27416013 + Tigger1 DNA MER2_type 1808 2418 0 592 200 57 0 chr15 73964508 73964608 -27415913 + MER2 DNA MER2_type 239 344 -1 437 206 0 0 chr15 73964613 73964686 -27415835 + Tigger7 DNA MER2_type 2419 2491 0 2126 119 16 16 chr15 73964807 73965117 -27415404 - AluSx SINE Alu -2 310 1 1492 164 7 93 chr15 73965159 73965469 -27415052 - AluJo SINE Alu -29 283 1 1915 111 14 18 chr15 73965656 73965936 -27414585 - AluSg1 SINE Alu -30 279 1 1993 118 0 17 chr15 73966753 73967066 -27413455 - AluSx SINE Alu 0 308 1 183 268 0 0 chr15 73967309 73967350 -27413171 - L2 LINE L2 0 3272 3232 8026 42 33 1 chr15 73967351 73968327 -27412194 - LTR13 LTR ERVK 0 1007 1 268 257 21 11 chr15 73970421 73970563 -27409958 - MIR SINE MIR -14 248 58 671 306 60 8 chr15 73970747 73970982 -27409539 - MIR SINE MIR -15 247 1 2069 85 0 52 chr15 73971153 73971200 -27409321 - MLT2A1 LTR ERVL 0 444 396 420 111 0 0 chr15 73971200 73971263 -27409258 + (TG)n Simple_repeat Simple_repeat 2 64 0 2069 85 0 52 chr15 73971263 73971521 -27409000 - MLT2A1 LTR ERVL -48 396 155 664 219 0 0 chr15 73972023 73972142 -27408379 - FLAM_A SINE Alu -11 122 4 1096 285 86 37 chr15 73972445 73973444 -27407077 - L1P5 LINE L1 -633 5523 4471 4174 173 59 64 chr15 73973500 73974377 -27406144 - L1MB3 LINE L1 -2 6181 5301 279 0 0 0 chr15 73974377 73974408 -27406113 + (TA)n Simple_repeat Simple_repeat 1 31 0 4174 173 59 64 chr15 73974408 73975118 -27405403 - L1MB3 LINE L1 -882 5301 4561 327 130 0 19 chr15 73975118 73975172 -27405349 - LTR43 LTR ERV1 -145 457 405 4174 173 59 64 chr15 73975172 73975337 -27405184 - L1MB3 LINE L1 -1622 4561 4397 759 81 0 0 chr15 73975454 73975553 -27404968 + L1PA4 LINE L1 1 99 -6047 * 34600 39 3 2 chr15 73975534 73980606 -27399915 + L1PA4 LINE L1 1081 6155 0 3966 217 35 19 chr15 73980862 73981848 -27398673 - L1MA9 LINE L1 -46 7287 6287 1075 184 0 0 chr15 73981862 73982047 -27398474 - AluSx SINE Alu 0 312 128 559 114 0 0 chr15 73982047 73982126 -27398395 - AluSx SINE Alu -233 79 1 401 218 82 0 chr15 73982127 73982237 -27398284 - L1MA9 LINE L1 -867 6300 6182 * 2519 206 47 5 chr15 73982235 73982851 -27397670 - L1MA9 LINE L1 -3136 4031 3390 * 5300 239 60 36 chr15 73982829 73985551 -27394970 - L1MA9 LINE L1 -4147 3020 565 491 225 18 53 chr15 73985540 73985709 -27394812 - L1M4 LINE L1 -2200 3946 3784 * 487 190 155 0 chr15 73985809 73985951 -27394570 - L1ME3A LINE L1 -6 6164 6001 507 33 0 0 chr15 73985951 73986012 -27394509 + (CTA)n Simple_repeat Simple_repeat 1 61 0 391 211 0 0 chr15 73986045 73986116 -27394405 - L1ME3A LINE L1 -521 5649 5579 482 168 152 0 chr15 73986189 73986230 -27394291 - L1MA10 LINE L1 0 6334 6294 1038 228 42 40 chr15 73986230 73986720 -27393801 - L1ME1 LINE L1 -46 6189 5641 5868 19 0 0 chr15 73986743 73987413 -27393108 - L1PA3 LINE L1 -3 6152 5483 11986 30 0 0 chr15 73987413 73988922 -27391599 + L1PA3 LINE L1 3972 5480 -675 4712 222 90 69 chr15 73988919 73990120 -27390401 - L1ME1 LINE L1 -588 5647 4473 * 378 233 0 0 chr15 73990120 73990193 -27390328 - Tigger5 DNA MER2_type 0 2323 2251 304 222 0 0 chr15 73990163 73990217 -27390304 - Tigger5 DNA MER2_type -2269 54 1 * 4712 222 90 69 chr15 73990217 73991076 -27389445 - L1ME1 LINE L1 -1786 4449 3452 2272 98 0 13 chr15 73991099 73991404 -27389117 + AluSc SINE Alu 1 301 -8 1866 142 0 0 chr15 73991584 73991851 -27388670 - AluSx SINE Alu -45 267 1 715 258 39 11 chr15 73991856 73992135 -27388386 - L1ME1 LINE L1 -2847 3368 3082 195 100 0 0 chr15 73992137 73992167 -27388354 + (T)n Simple_repeat Simple_repeat 1 30 0 225 302 10 0 chr15 73992187 73992283 -27388238 - L1ME1 LINE L1 -3114 3101 3005 1330 199 106 34 chr15 73992288 73992609 -27387912 - MER2 DNA MER2_type 0 345 2 2109 268 66 8 chr15 73992614 73993750 -27386771 - L1ME1 LINE L1 -3235 2980 1809 30 0 0 0 chr15 73993790 73993820 -27386701 + AT_rich Low_complexity Low_complexity 1 30 0 619 296 169 12 chr15 73993910 73994407 -27386114 - HAL1 LINE L1 -1932 575 1 22 35 0 0 chr15 73994738 73994767 -27385754 + AT_rich Low_complexity Low_complexity 1 29 0 229 222 0 0 chr15 73994974 73995037 -27385484 - L1MB2 LINE L1 -34 6137 6075 7444 38 0 0 chr15 73995075 73996005 -27384516 - L1PA3 LINE L1 0 6155 5226 3276 32 0 2 chr15 73996005 73996407 -27384114 + L1PA3 LINE L1 4848 5248 -898 357 261 65 0 chr15 73997311 73997403 -27383118 - MER103 DNA DNA -67 99 2 1966 157 0 3 chr15 73997886 73998180 -27382341 + AluSx SINE Alu 1 293 -19 806 118 0 0 chr15 73998449 73998583 -27381938 - AluSg/x SINE Alu 0 305 172 933 263 44 15 chr15 73999528 73999866 -27380655 - L1ME3 LINE L1 0 6162 5815 229 294 35 24 chr15 73999873 73999958 -27380563 - MER90 LTR ERV1 0 575 490 2493 263 78 38 chr15 73999967 74001160 -27379361 + L1PA13 LINE L1 1 1655 -5132 * 3344 210 3 1 chr15 74001154 74001884 -27378637 + L1 LINE L1 3935 4665 -1481 332 395 24 45 chr15 74001904 74002195 -27378326 - L1MEc LINE L1 -6014 382 98 2238 100 0 3 chr15 74002695 74002986 -27377535 + AluSx SINE Alu 1 290 -22 22 35 0 0 chr15 74003019 74003048 -27377473 + AT_rich Low_complexity Low_complexity 1 29 0 2178 129 0 3 chr15 74005009 74005320 -27375201 - AluSx SINE Alu -2 310 1 302 94 38 0 chr15 74006045 74006098 -27374423 - L1MB2 LINE L1 -2 6169 6115 339 186 0 110 chr15 74006098 74006216 -27374305 - L1MA9 LINE L1 -5 6307 6203 * 2324 166 18 9 chr15 74006205 74006650 -27373871 + L1 LINE L1 4313 4761 -1385 * 3473 153 40 38 chr15 74006645 74007336 -27373185 - L1MB3 LINE L1 -37 6146 5454 383 233 75 19 chr15 74007522 74007681 -27372840 + L1M4 LINE L1 2444 2611 -3535 435 266 99 57 chr15 74007795 74007915 -27372606 - L1MEc LINE L1 -2945 3270 3157 2128 154 0 0 chr15 74007915 74008227 -27372294 - AluSx SINE Alu 0 312 1 435 266 99 57 chr15 74008227 74008388 -27372133 - L1MEc LINE L1 -3058 3157 2977 324 311 102 30 chr15 74008918 74009085 -27371436 - L1MEc LINE L1 -4695 1701 1523 353 293 90 45 chr15 74009087 74009309 -27371212 - L1M4 LINE L1 -1425 4721 4490 30 27 0 0 chr15 74009366 74009403 -27371118 + AT_rich Low_complexity Low_complexity 1 37 0 225 270 11 22 chr15 74009540 74009629 -27370892 - L1M4 LINE L1 -1962 4184 4097 3281 214 86 48 chr15 74009965 74011027 -27369494 - L1MC3 LINE L1 -17 7768 6667 315 326 123 14 chr15 74011041 74011317 -27369204 - L1M4 LINE L1 -2631 3515 3210 2429 79 0 0 chr15 74011486 74011790 -27368731 + AluY SINE Alu 1 304 -7 6754 68 9 3 chr15 74011801 74013190 -27367331 + L1PA7 LINE L1 4747 6150 -4 1212 298 59 22 chr15 74013790 74014719 -27365802 - L1ME3A LINE L1 -223 6598 5631 275 223 157 8 chr15 74014888 74015009 -27365512 - L1ME3A LINE L1 -1459 5338 5200 432 309 83 22 chr15 74015125 74015487 -27365034 - L1ME3A LINE L1 -1795 5002 4619 441 304 112 15 chr15 74015503 74016121 -27364400 - L1ME3A LINE L1 -2261 4536 3859 681 171 0 0 chr15 74016138 74016261 -27364260 - L1MA3 LINE L1 0 6305 6183 4882 242 45 28 chr15 74016265 74016685 -27363836 - L1PA13 LINE L1 -3852 2945 2534 557 223 8 15 chr15 74016685 74016815 -27363706 - FLAM_C SINE Alu -3 130 2 4882 242 45 28 chr15 74016815 74019179 -27361342 - L1PA13 LINE L1 -4263 2534 1 375 221 59 29 chr15 74019456 74019592 -27360929 - L1ME1 LINE L1 -9 6157 6018 2129 171 38 9 chr15 74019717 74020137 -27360384 - MSTB1 LTR MaLR 0 432 1 408 88 0 0 chr15 74020175 74020232 -27360289 + (TTA)n Simple_repeat Simple_repeat 3 59 0 569 244 35 0 chr15 74020233 74020405 -27360116 - L1MEc LINE L1 -3887 2509 2332 223 270 78 52 chr15 74021306 74021421 -27359100 - L2 LINE L2 -1 3271 3154 223 301 0 14 chr15 74021894 74021967 -27358554 + CT-rich Low_complexity Low_complexity 1 72 0 21 0 0 0 chr15 74022553 74022574 -27357947 + AT_rich Low_complexity Low_complexity 1 21 0 359 324 148 6 chr15 74023105 74023281 -27357240 - MIR3 SINE MIR -4 204 4 34 55 0 0 chr15 74023704 74023759 -27356762 + AT_rich Low_complexity Low_complexity 1 55 0 399 274 174 14 chr15 74023796 74024114 -27356407 - L1ME1 LINE L1 -119 6002 5622 2340 88 0 0 chr15 74024504 74024798 -27355723 + AluSx SINE Alu 1 294 -18 399 271 41 24 chr15 74025467 74025637 -27354884 - L1MC5 LINE L1 -52 7909 7737 253 228 150 84 chr15 74025855 74026022 -27354499 - MLT1J LTR MaLR -33 478 301 288 286 80 9 chr15 74026109 74026221 -27354300 - MLT1J LTR MaLR -344 167 48 1535 231 100 65 chr15 74026236 74026638 -27353883 - L1MC5 LINE L1 -582 7379 6981 342 0 0 0 chr15 74026638 74026676 -27353845 + (TG)n Simple_repeat Simple_repeat 2 39 0 1535 231 100 65 chr15 74026676 74027022 -27353499 - L1MC5 LINE L1 -980 6981 6649 627 285 106 38 chr15 74027290 74027770 -27352751 - HAL1b LINE L1 -577 771 259 293 56 0 0 chr15 74027782 74027818 -27352703 - U2 snRNA snRNA -152 36 1 2308 75 0 3 chr15 74028844 74029137 -27351384 - AluY SINE Alu -15 296 5 1403 185 35 4 chr15 74029305 74029565 -27350956 - AluJb SINE Alu -39 273 6 483 316 46 36 chr15 74029955 74030284 -27350237 + L1ME4a LINE L1 5513 5844 -277 31 0 0 0 chr15 74030421 74030452 -27350069 + AT_rich Low_complexity Low_complexity 1 31 0 383 269 21 104 chr15 74030920 74031113 -27349408 + MIR SINE MIR 79 255 -7 209 81 0 27 chr15 74031385 74031422 -27349099 + (TTG)n Simple_repeat Simple_repeat 2 37 0 584 256 11 125 chr15 74031499 74031780 -27348741 + MIR SINE MIR 12 260 -2 2948 248 166 94 chr15 74031803 74032648 -27347873 - L2 LINE L2 -1 3312 2529 1579 164 10 34 chr15 74032648 74032940 -27347581 - AluSq SINE Alu -10 303 19 2948 248 166 94 chr15 74032940 74032974 -27347547 - L2 LINE L2 -784 2529 2499 880 83 0 0 chr15 74032974 74033095 -27347426 - AluSp/q SINE Alu 0 313 193 2948 248 166 94 chr15 74033095 74034222 -27346299 - L2 LINE L2 -814 2499 1003 24 0 0 0 chr15 74034809 74034833 -27345688 + AT_rich Low_complexity Low_complexity 1 24 0 1488 262 154 31 chr15 74035916 74036607 -27343914 + L2 LINE L2 2078 3045 -268 2397 217 133 29 chr15 74036762 74037499 -27343022 - L1ME2 LINE L1 -9 6155 5342 2474 216 83 117 chr15 74037530 74038267 -27342254 - L1ME2 LINE L1 -867 5279 4519 194 0 0 37 chr15 74038267 74038294 -27342227 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 6453 90 2 22 chr15 74038297 74039443 -27341078 - L1PA10 LINE L1 -19 6149 5006 2474 216 83 117 chr15 74039443 74040093 -27340428 - L1ME2 LINE L1 -1629 4517 3935 274 237 0 0 chr15 74040118 74040177 -27340344 - L1P4 LINE L1 -433 5733 5675 14931 205 23 28 chr15 74040224 74041060 -27339461 - L1PA15 LINE L1 -5 6811 5973 1731 188 3 0 chr15 74041060 74041352 -27339169 + AluJo SINE Alu 1 293 -19 14931 205 23 28 chr15 74041352 74045798 -27334723 - L1PA15 LINE L1 -843 5973 1537 5613 195 29 9 chr15 74045964 74046212 -27334309 - L1P4 LINE L1 -477 5689 5448 2150 49 0 22 chr15 74046212 74046479 -27334042 - AluY SINE Alu -21 290 30 5613 195 29 9 chr15 74046479 74047899 -27332622 - L1P4 LINE L1 -718 5448 3993 1670 128 0 34 chr15 74047912 74048067 -27332454 - AluSx SINE Alu -24 288 144 417 39 0 0 chr15 74048067 74048118 -27332403 + (TG)n Simple_repeat Simple_repeat 2 52 0 1670 128 0 34 chr15 74048118 74048227 -27332294 - AluSx SINE Alu -168 144 33 585 211 0 0 chr15 74048227 74048355 -27332166 + (TA)n Simple_repeat Simple_repeat 2 129 0 781 138 0 36 chr15 74048359 74048497 -27332024 - AluSq/x SINE Alu -180 133 1 2388 255 42 97 chr15 74048497 74050355 -27330166 - L1MEc LINE L1 -2149 4066 2311 1270 253 119 12 chr15 74050406 74050951 -27329570 - L1MEc LINE L1 -4274 2122 1478 44 63 0 0 chr15 74051019 74051098 -27329423 + AT_rich Low_complexity Low_complexity 1 79 0 926 202 16 26 chr15 74051207 74051380 -27329141 - AluJb SINE Alu -38 274 102 2391 193 25 73 chr15 74051380 74052023 -27328498 - LTR9 LTR ERV1 0 612 1 926 202 16 26 chr15 74052023 74052042 -27328479 - AluJb SINE Alu -210 102 84 977 277 112 48 chr15 74052052 74053330 -27327191 - L1MEc LINE L1 -4857 1395 37 264 310 51 44 chr15 74053355 74053513 -27327008 + L2 LINE L2 3083 3241 -72 516 209 44 20 chr15 74054396 74054529 -27325992 - MER2 DNA MER2_type -86 153 15 203 256 0 0 chr15 74055110 74055149 -27325372 - L2 LINE L2 -20 3252 3214 1875 168 6 3 chr15 74055375 74055691 -27324830 + MER2 DNA MER2_type 28 344 -1 1747 172 81 3 chr15 74056090 74056474 -27324047 - Charlie1b DNA MER1_type -1 522 109 306 299 46 69 chr15 74056639 74056813 -27323708 + MER5A DNA MER1_type 2 171 -18 248 266 31 94 chr15 74056826 74056926 -27323595 - MIR3 SINE MIR -6 202 110 2217 116 0 0 chr15 74056926 74057229 -27323292 - AluSx SINE Alu -9 303 1 248 266 31 94 chr15 74057229 74057256 -27323265 - MIR3 SINE MIR -98 110 83 346 327 88 13 chr15 74058558 74058717 -27321804 - MIR SINE MIR -70 192 22 7295 38 28 0 chr15 74059039 74059912 -27320609 - MER11D LTR ERVK 0 897 1 12966 31 3 2 chr15 74059912 74061448 -27319073 - HERVK11D LTR ERVK 0 7752 6216 671 216 144 6 chr15 74061612 74061779 -27318742 + MIR SINE MIR 29 218 -44 690 282 88 27 chr15 74061933 74062309 -27318212 + L1MB8 LINE L1 3804 4202 -1944 1412 186 22 116 chr15 74062452 74062825 -27317696 + L1MB8 LINE L1 5113 5519 -655 528 16 0 0 chr15 74062825 74062886 -27317635 + (CA)n Simple_repeat Simple_repeat 2 62 0 1412 186 22 116 chr15 74062886 74062923 -27317598 + L1MB8 LINE L1 5519 5558 -616 1350 159 76 54 chr15 74062923 74063199 -27317322 - AluJo SINE Alu -30 282 1 1412 186 22 116 chr15 74063199 74063408 -27317113 + L1MB8 LINE L1 5558 5686 -488 560 237 81 20 chr15 74063417 74063522 -27316999 + L1MB8 LINE L1 5963 6060 -118 207 0 0 0 chr15 74063522 74063545 -27316976 + (TGG)n Simple_repeat Simple_repeat 2 24 0 560 237 81 20 chr15 74063545 74063637 -27316884 + L1MB8 LINE L1 6060 6172 -6 1261 281 69 43 chr15 74063730 74064307 -27316214 + L1M4 LINE L1 5 596 -5946 865 244 4 29 chr15 74064304 74064550 -27315971 + L1M4 LINE L1 1739 1978 -4668 * 3156 243 30 18 chr15 74064547 74065141 -27315380 + L1M4 LINE L1 4123 4708 -1936 3172 148 52 32 chr15 74065141 74065734 -27314787 + MER6A DNA MER2_type 1 605 0 3156 243 30 18 chr15 74065734 74065756 -27314765 + L1M4 LINE L1 4708 4728 -1916 201 94 0 0 chr15 74065756 74065788 -27314733 + (CA)n Simple_repeat Simple_repeat 2 33 0 3156 243 30 18 chr15 74065788 74066191 -27314330 + L1M4 LINE L1 4728 5156 -1488 22865 165 18 31 chr15 74066191 74067550 -27312971 + L1PA10 LINE L1 1 1375 -5108 2300 97 0 19 chr15 74067550 74067860 -27312661 + AluSx SINE Alu 1 304 -8 22865 165 18 31 chr15 74067860 74068136 -27312385 + L1PA10 LINE L1 1375 1653 -4830 2065 132 0 13 chr15 74068136 74068439 -27312082 + AluY SINE Alu 1 299 -12 22865 165 18 31 chr15 74068439 74073268 -27307253 + L1PA10 LINE L1 1653 6408 -75 2206 127 0 0 chr15 74073894 74074194 -27306327 - AluSx SINE Alu -12 300 1 6245 227 49 16 chr15 74074365 74074513 -27306008 + L1M2 LINE L1 2 144 -6705 1454 109 36 5 chr15 74074513 74074733 -27305788 - MER30 DNA MER1_type 0 230 4 6245 227 49 16 chr15 74074733 74076030 -27304491 + L1M2 LINE L1 144 1495 -5354 377 237 0 11 chr15 74076023 74076116 -27304405 + L1M2 LINE L1 2072 2163 -4686 * 3168 185 26 15 chr15 74076112 74076837 -27303684 - L1 LINE L1 -1539 4607 3875 * 3455 202 14 4 chr15 74076832 74077618 -27302903 + L1P LINE L1 4604 5397 -749 840 224 56 0 chr15 74077619 74077815 -27302706 - MSTB LTR MaLR -219 207 1 25 65 0 0 chr15 74077994 74078040 -27302481 + AT_rich Low_complexity Low_complexity 1 46 0 765 249 90 0 chr15 74078994 74079195 -27301326 + MER20 DNA MER1_type 1 219 0 1969 92 25 0 chr15 74079609 74079890 -27300631 - L1PA10 LINE L1 -3 6165 5878 358 235 346 0 chr15 74080288 74080424 -27300097 - MIR SINE MIR 0 262 80 1759 157 11 7 chr15 74080546 74080833 -27299688 - AluSx SINE Alu -24 288 1 1171 42 0 0 chr15 74080897 74081040 -27299481 + L1PA3 LINE L1 6013 6155 0 1245 178 129 23 chr15 74081094 74081481 -27299040 + L1ME2 LINE L1 5540 5967 -197 2000 157 0 0 chr15 74081484 74081770 -27298751 + AluSx SINE Alu 1 286 -26 21 57 0 0 chr15 74081923 74081958 -27298563 + AT_rich Low_complexity Low_complexity 1 35 0 307 285 127 27 chr15 74082050 74082271 -27298250 + L1M4 LINE L1 4478 4720 -1426 2158 133 0 3 chr15 74082343 74082652 -27297869 - AluSx SINE Alu -4 308 1 855 251 78 48 chr15 74082731 74083234 -27297287 + MLT1H LTR MaLR 14 549 0 357 277 204 13 chr15 74083335 74083570 -27296951 + L1M4 LINE L1 4995 5274 -872 3865 174 27 16 chr15 74083976 74084788 -27295733 - L1MB3 LINE L1 -1 6182 5362 2186 120 0 3 chr15 74084789 74085090 -27295431 - AluSg SINE Alu -10 300 1 477 34 0 0 chr15 74085095 74085154 -27295367 + (TG)n Simple_repeat Simple_repeat 2 60 0 1502 158 19 11 chr15 74085175 74085441 -27295080 - AluJb SINE Alu -21 291 24 1212 258 128 33 chr15 74085441 74086194 -27294327 - L1 LINE L1 -2577 3569 2746 10780 154 14 18 chr15 74086220 74088093 -27292428 - L1PA13 LINE L1 -1 6162 4283 1632 189 14 10 chr15 74088093 74088390 -27292131 + AluJb SINE Alu 1 298 -14 189 0 0 0 chr15 74088392 74088413 -27292108 + (CAG)n Simple_repeat Simple_repeat 2 22 0 10780 154 14 18 chr15 74088413 74089309 -27291212 - L1PA13 LINE L1 -1881 4282 3378 4016 198 43 3 chr15 74089310 74090312 -27290209 - L1MB3 LINE L1 -1092 5054 4013 2432 206 23 14 chr15 74090554 74091116 -27289405 + L1MCa LINE L1 446 1012 -5414 1448 206 14 14 chr15 74091147 74091424 -27289097 - AluJo SINE Alu -35 277 1 42273 38 5 1 chr15 74091458 74097591 -27282930 + L1PA4 LINE L1 3 6152 -3 23 0 0 0 chr15 74097596 74097619 -27282902 + AT_rich Low_complexity Low_complexity 1 23 0 2668 143 82 20 chr15 74097700 74098541 -27281980 + L1MCa LINE L1 1021 1809 -4617 1332 214 4 0 chr15 74098541 74098779 -27281742 - MER8 DNA MER2_type 0 239 1 2668 143 82 20 chr15 74098779 74098977 -27281544 + L1MCa LINE L1 1809 1993 -4433 2088 171 6 0 chr15 74098977 74099323 -27281198 - MER7A DNA MER2_type 0 346 1 2668 143 82 20 chr15 74099323 74099388 -27281133 + L1MCa LINE L1 1993 2319 -4107 290 234 21 0 chr15 74099381 74099475 -27281046 + L1M4 LINE L1 3859 3954 -2192 * 2252 103 0 0 chr15 74099883 74100174 -27280347 + AluSq SINE Alu 5 295 -18 183 80 0 0 chr15 74100174 74100199 -27280322 + (TATATG)n Simple_repeat Simple_repeat 3 27 0 * 444 37 0 0 chr15 74100198 74100252 -27280269 + (CA)n Simple_repeat Simple_repeat 2 55 0 2212 221 77 59 chr15 74100708 74101591 -27278930 - L1ME2 LINE L1 -10 6154 5256 29282 100 11 21 chr15 74101678 74108107 -27272414 - L1PA7 LINE L1 0 6469 2 430 229 9 114 chr15 74108107 74108317 -27272204 - MER58A DNA MER1_type -10 214 27 21 0 0 0 chr15 74108399 74108420 -27272101 + AT_rich Low_complexity Low_complexity 1 21 0 255 191 56 0 chr15 74108437 74108526 -27271995 + (TA)n Simple_repeat Simple_repeat 1 94 0 192 77 0 0 chr15 74108531 74108557 -27271964 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 1623 192 0 10 chr15 74108561 74108852 -27271669 - AluJb SINE Alu -24 288 1 1125 166 0 11 chr15 74108979 74109154 -27271367 + AluJb SINE Alu 115 287 -25 411 238 98 8 chr15 74109336 74109435 -27271086 + MER45A DNA AcHobo 46 159 -1422 3888 141 23 9 chr15 74109435 74110118 -27270403 - L1PB4 LINE L1 0 6156 5464 411 238 98 8 chr15 74110118 74110140 -27270381 + MER45A DNA AcHobo 159 178 0 4589 155 113 7 chr15 74110412 74111852 -27268669 + L1PBa LINE L1 2 1743 -5120 6328 192 26 17 chr15 74111861 74112407 -27268114 + L1PBa LINE L1 2638 3178 -3684 2551 71 0 3 chr15 74112407 74112717 -27267804 + AluY SINE Alu 1 309 -2 6328 192 26 17 chr15 74112717 74113894 -27266627 + L1PBa LINE L1 3178 4435 -2427 296 192 55 14 chr15 74113920 74113993 -27266528 - MER2 DNA MER2_type -269 76 1 634 281 10 15 chr15 74114018 74114217 -27266304 + L1MC4 LINE L1 6653 6850 -1192 22 0 0 0 chr15 74115287 74115309 -27265212 + AT_rich Low_complexity Low_complexity 1 22 0 499 290 64 27 chr15 74115354 74115592 -27264929 - MIR SINE MIR 0 262 15 831 159 0 8 chr15 74115776 74115908 -27264613 + FLAM_C SINE Alu 1 131 -2 278 417 0 0 chr15 74115945 74116060 -27264461 + MIR SINE MIR 20 134 -128 14162 160 24 24 chr15 74116067 74117260 -27263261 - L1MA3 LINE L1 -2 7722 6531 2255 121 0 0 chr15 74117260 74117558 -27262963 - AluSg SINE Alu -12 298 1 14162 160 24 24 chr15 74117558 74118743 -27261778 - L1MA3 LINE L1 -1193 6531 5348 1923 139 7 3 chr15 74118743 74119038 -27261483 + AluSx SINE Alu 1 296 -16 14162 160 24 24 chr15 74119038 74120024 -27260497 - L1MA3 LINE L1 -2376 5348 4364 643 239 0 0 chr15 74120024 74120154 -27260367 - FLAM_C SINE Alu -1 132 3 14162 160 24 24 chr15 74120154 74121339 -27259182 - L1MA3 LINE L1 -3360 4364 3173 2178 78 0 0 chr15 74121339 74121608 -27258913 - AluY SINE Alu -6 305 37 13287 141 30 8 chr15 74121608 74123154 -27257367 - L1MA3 LINE L1 -5268 2297 684 1913 184 0 3 chr15 74123154 74123464 -27257057 - AluJb SINE Alu -2 310 2 13287 141 30 8 chr15 74123464 74124148 -27256373 - L1MA3 LINE L1 -6881 684 17 220 235 94 24 chr15 74124148 74124233 -27256288 + MIR SINE MIR 122 212 -50 1560 194 18 11 chr15 74124255 74124539 -27255982 - AluJo SINE Alu -16 296 11 250 319 53 9 chr15 74124595 74124708 -27255813 - L2 LINE L2 -3 3310 3193 235 302 58 0 chr15 74124718 74124804 -27255717 - MER3 DNA MER1_type -114 95 5 213 318 33 46 chr15 74124894 74125045 -27255476 - L2 LINE L2 -236 3036 2888 527 310 92 88 chr15 74125095 74125750 -27254771 - L2 LINE L2 -1802 1512 856 184 246 0 35 chr15 74126159 74126216 -27254305 - L2 LINE L2 -2080 1234 1180 22 0 0 0 chr15 74127271 74127293 -27253228 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr15 74127683 74127709 -27252812 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 279 0 0 0 chr15 74127708 74127739 -27252782 + (GA)n Simple_repeat Simple_repeat 1 31 0 1005 204 5 27 chr15 74127817 74128003 -27252518 - MER5A DNA MER1_type -7 182 1 21 0 0 0 chr15 74128293 74128314 -27252207 + AT_rich Low_complexity Low_complexity 1 21 0 373 333 55 27 chr15 74129695 74129878 -27250643 + L1ME3A LINE L1 877 1064 -5466 333 399 40 32 chr15 74130434 74130682 -27249839 + L1ME3A LINE L1 917 1166 -5364 25 31 0 0 chr15 74130723 74130755 -27249766 + AT_rich Low_complexity Low_complexity 1 32 0 473 295 70 10 chr15 74130822 74131124 -27249397 + L1ME3A LINE L1 1381 1700 -4840 1522 264 126 56 chr15 74131126 74132002 -27248519 + L1ME3A LINE L1 4079 4893 -1671 1744 122 0 4 chr15 74132002 74132248 -27248273 + AluSx SINE Alu 31 275 -37 1522 264 126 56 chr15 74132248 74132403 -27248118 + L1ME3A LINE L1 4893 5036 -1528 315 0 0 0 chr15 74132403 74132438 -27248083 + (TA)n Simple_repeat Simple_repeat 1 35 0 1522 264 126 56 chr15 74132438 74133522 -27246999 + L1ME3A LINE L1 5036 6341 -223 301 255 47 75 chr15 74133591 74133803 -27246718 + L1ME3A LINE L1 6356 6561 -3 367 254 8 16 chr15 74134935 74135057 -27245464 + L1ME2 LINE L1 5988 6108 -56 10663 154 11 17 chr15 74135057 74137285 -27243236 - L1P4 LINE L1 -627 5536 3310 911 252 122 16 chr15 74137589 74138416 -27242105 - L1ME3A LINE L1 -204 5966 5047 2138 116 3 16 chr15 74138457 74138768 -27241753 - AluSq SINE Alu -6 307 1 24 0 0 0 chr15 74138776 74138800 -27241721 + AT_rich Low_complexity Low_complexity 1 24 0 557 139 0 0 chr15 74138825 74138911 -27241610 + AluSp/q SINE Alu 208 293 -20 22 0 0 0 chr15 74139131 74139153 -27241368 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr15 74139330 74139370 -27241151 + AT_rich Low_complexity Low_complexity 1 40 0 385 237 61 18 chr15 74140087 74140201 -27240320 + MIR SINE MIR 82 200 -62 382 319 28 28 chr15 74140228 74140372 -27240149 + MIR SINE MIR 1 144 -118 490 235 34 27 chr15 74140391 74140540 -27239981 - MLT1A1 LTR MaLR -215 150 1 258 105 0 0 chr15 74140679 74140717 -27239804 + (CA)n Simple_repeat Simple_repeat 1 38 0 5223 196 19 17 chr15 74140725 74141048 -27239473 - L1PA15 LINE L1 -4 6812 6491 2130 124 18 49 chr15 74141048 74141272 -27239249 - THE1C LTR MaLR 0 375 166 2094 105 0 67 chr15 74141272 74141587 -27238934 + AluSx SINE Alu 1 294 -18 2130 124 18 49 chr15 74141587 74141749 -27238772 - THE1C LTR MaLR -209 166 1 5223 196 19 17 chr15 74141749 74142865 -27237656 - L1PA15 LINE L1 -325 6491 5409 2260 116 111 10 chr15 74142865 74143252 -27237269 - MSTA LTR MaLR -2 426 1 5223 196 19 17 chr15 74143252 74143878 -27236643 - L1PA15 LINE L1 -1407 5409 4786 5844 209 30 55 chr15 74143880 74145551 -27234970 - L1PA15 LINE L1 -2629 4168 2603 2126 98 41 20 chr15 74145551 74145846 -27234675 + AluSx SINE Alu 1 301 -11 5844 209 30 55 chr15 74145846 74147169 -27233352 - L1PA15 LINE L1 -4194 2603 1250 3027 248 40 72 chr15 74147277 74148594 -27231927 - L2 LINE L2 -102 3211 1932 695 287 94 65 chr15 74148577 74149054 -27231467 + L3 LINE CR1 775 1265 -312 * 1052 165 0 0 chr15 74149132 74149290 -27231231 + FRAM SINE Alu 1 158 -18 292 331 95 12 chr15 74149290 74149459 -27231062 + L3 LINE CR1 1381 1563 -14 2348 85 0 7 chr15 74149501 74149794 -27230727 + AluSc SINE Alu 1 291 -18 2406 106 0 0 chr15 74150041 74150353 -27230168 + AluSx SINE Alu 1 312 0 1690 160 53 0 chr15 74150354 74150636 -27229885 + AluJo SINE Alu 1 297 -15 582 247 0 45 chr15 74150636 74150790 -27229731 + L2 LINE L2 2915 3061 -252 465 242 50 0 chr15 74150828 74150927 -27229594 + L2 LINE L2 3210 3313 0 664 233 10 10 chr15 74151037 74151230 -27229291 - L1MB8 LINE L1 -1 6177 5985 3105 153 11 81 chr15 74151231 74151444 -27229077 + L1MB7 LINE L1 5494 5720 -464 2119 123 0 0 chr15 74151444 74151728 -27228793 + AluSx SINE Alu 1 284 -28 3105 153 11 81 chr15 74151728 74152228 -27228293 + L1MB7 LINE L1 5720 6157 -27 520 300 17 0 chr15 74153254 74153434 -27227087 + AluJb SINE Alu 1 183 -129 345 146 0 0 chr15 74153712 74153767 -27226754 - L1PB3 LINE L1 -189 5965 5911 1091 168 158 10 chr15 74153772 74154076 -27226445 - L1MDa LINE L1 -5271 1269 921 448 314 63 22 chr15 74154225 74154454 -27226067 - L1MDa LINE L1 -5580 960 497 536 320 151 0 chr15 74154577 74154802 -27225719 - MIR SINE MIR 0 262 4 1687 161 0 0 chr15 74155343 74155629 -27224892 + MER47A DNA MER2_type 1 286 -80 * 2474 183 72 25 chr15 74155627 74156186 -27224335 + MER21B LTR ERV1 230 814 -49 331 286 234 45 chr15 74156294 74157055 -27223466 - L2 LINE L2 -5 3267 2331 270 360 33 7 chr15 74157295 74157448 -27223073 - L2 LINE L2 -1400 1914 1758 527 303 36 6 chr15 74158003 74158168 -27222353 + MIR3 SINE MIR 36 205 -3 859 210 107 15 chr15 74158467 74158672 -27221849 - MER58A DNA MER1_type 0 224 1 286 143 0 0 chr15 74159047 74159096 -27221425 - L1MC4 LINE L1 -62 7980 7932 2021 129 3 3 chr15 74159122 74159408 -27221113 - AluSx SINE Alu -26 286 1 271 55 110 164 chr15 74160310 74160333 -27220188 - L1MB2 LINE L1 -28 6143 6120 1813 163 10 0 chr15 74160333 74160627 -27219894 - AluJb SINE Alu -15 297 1 271 55 110 164 chr15 74160627 74160676 -27219845 - L1MB2 LINE L1 -51 6120 6075 2434 189 98 2 chr15 74160864 74161404 -27219117 + L1MC4 LINE L1 6943 7534 -508 529 153 0 0 chr15 74161565 74161637 -27218884 - AluS SINE Alu -239 73 2 1780 131 87 4 chr15 74161680 74161955 -27218566 + AluSx SINE Alu 1 298 -14 769 150 43 14 chr15 74161958 74162098 -27218423 - Cheshire DNA MER1_type -1759 661 518 289 241 36 0 chr15 74162141 74162224 -27218297 + LTR16A LTR ERVL 301 386 -64 456 276 70 0 chr15 74162459 74162615 -27217906 + HERV16 LTR ERVL 234 400 -4596 1565 295 14 7 chr15 74162643 74163084 -27217437 + HERV16 LTR ERVL 2349 2792 -2204 307 308 11 2 chr15 74163082 74163204 -27217317 + HERV16 LTR ERVL 3219 3323 -2331 * 3174 325 58 33 chr15 74163214 74165077 -27215444 + HERV16 LTR ERVL 2847 4755 -1009 373 245 29 0 chr15 74165081 74165183 -27215338 + HERV16 LTR ERVL 4882 4986 -778 324 252 43 17 chr15 74165382 74165497 -27215024 + HERV16 LTR ERVL 4789 4906 -90 1860 166 0 28 chr15 74165668 74165987 -27214534 - AluSx SINE Alu -2 310 1 2190 108 0 13 chr15 74166048 74166354 -27214167 + AluSx SINE Alu 1 302 -10 1795 141 57 3 chr15 74167139 74167422 -27213099 + AluJo SINE Alu 1 298 -14 191 200 0 20 chr15 74167460 74167510 -27213011 - L2 LINE L2 -338 2975 2927 1041 255 97 33 chr15 74167524 74168131 -27212390 - L2 LINE L2 -85 3228 2493 359 235 0 0 chr15 74168251 74168319 -27212202 - L2 LINE L2 -2 3311 3244 2420 57 13 3 chr15 74168347 74168648 -27211873 + AluY SINE Alu 1 304 -7 505 300 252 7 chr15 74168679 74168989 -27211532 - MLT1L LTR MaLR -88 527 142 231 158 26 0 chr15 74169010 74169048 -27211473 + MER63 DNA MER1_type 1 39 -891 2271 117 3 0 chr15 74169049 74169356 -27211165 + AluSx SINE Alu 1 308 -4 1729 140 16 57 chr15 74169366 74169681 -27210840 + AluJb SINE Alu 1 302 -10 1207 217 121 23 chr15 74169847 74170384 -27210137 - MLT1E2 LTR MaLR 0 626 1 709 245 41 62 chr15 74170384 74170674 -27209847 + L1ME4a LINE L1 5402 5685 -436 1849 167 3 19 chr15 74170697 74171014 -27209507 - AluSx SINE Alu 0 312 1 222 219 31 78 chr15 74171022 74171086 -27209435 - L2 LINE L2 -49 3264 3204 1233 102 49 24 chr15 74172054 74172259 -27208262 - L1PA16 LINE L1 -1 6165 5956 1560 171 4 25 chr15 74172281 74172562 -27207959 - AluJb SINE Alu -18 294 20 1465 67 6 0 chr15 74172625 74172805 -27207716 + AluY SINE Alu 1 181 -130 532 104 0 0 chr15 74172808 74172875 -27207646 + AluY SINE Alu 227 293 -19 261 119 0 0 chr15 74172875 74172917 -27207604 + (GA)n Simple_repeat Simple_repeat 1 42 0 1136 185 117 21 chr15 74172973 74173254 -27207267 + MLT1F LTR MaLR 235 542 0 2110 141 0 0 chr15 74173291 74173595 -27206926 + AluSx SINE Alu 1 304 -8 449 223 60 70 chr15 74173643 74173858 -27206663 - AluJb SINE Alu 0 312 100 364 260 26 45 chr15 74174005 74174159 -27206362 + L1ME4a LINE L1 5666 5816 -1992 22 0 0 0 chr15 74174249 74174271 -27206250 + AT_rich Low_complexity Low_complexity 1 22 0 1625 145 4 4 chr15 74174274 74174516 -27206005 + AluJo SINE Alu 49 290 -22 406 226 79 71 chr15 74174570 74174836 -27205685 + L1ME4a LINE L1 5843 6110 -11 277 250 71 0 chr15 74174862 74174946 -27205575 + L1ME LINE L1 5738 5827 -294 2364 104 0 0 chr15 74174948 74175257 -27205264 + AluSg SINE Alu 1 309 -1 40 49 0 0 chr15 74176100 74176161 -27204360 + AT_rich Low_complexity Low_complexity 1 61 0 28 0 0 0 chr15 74176195 74176223 -27204298 + AT_rich Low_complexity Low_complexity 1 28 0 275 0 29 0 chr15 74176339 74176374 -27204147 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 415 318 99 43 chr15 74176400 74176774 -27203747 + L2 LINE L2 2337 2731 -583 515 278 177 53 chr15 74176951 74177097 -27203424 - LTR16C LTR ERVL -2 489 362 1887 112 0 15 chr15 74177097 74177394 -27203127 + AluSx SINE Alu 30 322 0 515 278 177 53 chr15 74177394 74177600 -27202921 - LTR16C LTR ERVL -129 362 90 254 341 220 0 chr15 74177727 74177900 -27202621 + L2 LINE L2 3039 3249 -23 210 191 0 0 chr15 74179129 74179171 -27201350 + (TAGGG)n Simple_repeat Simple_repeat 2 43 0 239 308 231 0 chr15 74179400 74179530 -27200991 + MIR3 SINE MIR 46 205 -3 1726 179 3 10 chr15 74180328 74180635 -27199886 - AluJo SINE Alu -7 305 1 2037 113 0 34 chr15 74181413 74181733 -27198788 + AluSq SINE Alu 1 309 -4 351 287 45 117 chr15 74181739 74182140 -27198381 + HAL1 LINE L1 946 1317 -1190 344 331 95 4 chr15 74182142 74182384 -27198137 + HAL1 LINE L1 1390 1653 -854 4409 104 58 2 chr15 74182554 74183197 -27197324 + L1PA16 LINE L1 5479 6157 -9 38 39 0 0 chr15 74183197 74183249 -27197272 + AT_rich Low_complexity Low_complexity 1 52 0 282 73 0 0 chr15 74183868 74183909 -27196612 + (A)n Simple_repeat Simple_repeat 1 41 0 19922 66 14 6 chr15 74184250 74186038 -27194483 + HERVK14 LTR ERVK 1526 3341 -2604 2356 81 0 3 chr15 74186038 74186333 -27194188 + AluY SINE Alu 1 294 -17 19922 66 14 6 chr15 74186333 74187060 -27193461 + HERVK14 LTR ERVK 3341 4061 -1884 5809 81 11 46 chr15 74187045 74187923 -27192598 + HERVK14 LTR ERVK 4803 5579 -366 * 1072 228 0 36 chr15 74187923 74187955 -27192566 + PRIMA41-int LTR ERV1 7541 7753 0 1168 138 0 42 chr15 74187955 74188144 -27192377 + HERVK14 LTR ERVK 5575 5755 -190 399 121 0 17 chr15 74188151 74188209 -27192312 + MER41C LTR ERV1 5 61 -493 524 48 0 0 chr15 74188209 74188272 -27192249 + HERVKC4 LTR ERVK 5822 5884 -61 912 316 9 9 chr15 74188315 74188644 -27191877 + HERVKC4 LTR ERVK 4928 5256 -6 1939 116 110 7 chr15 74188649 74189096 -27191425 + LTR14B LTR ERVK 1 608 0 449 207 54 0 chr15 74189096 74189207 -27191314 + L1ME LINE L1 3883 3999 -2147 * 1064 163 131 43 chr15 74189203 74189571 -27190950 + L1ME LINE L1 5179 5575 -589 2551 230 25 22 chr15 74189706 74190294 -27190227 + L1MC4 LINE L1 6499 7088 -954 1986 151 0 3 chr15 74190303 74190607 -27189914 + AluSx SINE Alu 1 303 -9 1083 221 147 20 chr15 74190607 74191249 -27189272 + L1MD3 LINE L1 7243 7986 -9 228 216 0 0 chr15 74191280 74191331 -27189190 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 234 0 0 0 chr15 74191331 74191357 -27189164 + (CA)n Simple_repeat Simple_repeat 2 27 0 2268 100 7 3 chr15 74191627 74191936 -27188585 - AluY SINE Alu -1 310 1 760 189 14 14 chr15 74192019 74192162 -27188359 - AluSg/x SINE Alu -12 297 155 666 117 0 0 chr15 74193528 74193648 -27186873 + (TA)n Simple_repeat Simple_repeat 2 121 0 1887 147 3 3 chr15 74193648 74193933 -27186588 - AluSx SINE Alu -27 285 1 255 250 45 45 chr15 74194353 74194420 -27186101 + MER45A DNA AcHobo 38 107 -1474 2142 123 7 0 chr15 74194420 74194722 -27185799 - AluSx SINE Alu -8 304 1 255 250 45 45 chr15 74194722 74194742 -27185779 + MER45A DNA AcHobo 106 125 -1456 1365 13 7 0 chr15 74194815 74194966 -27185555 - L1PA4 LINE L1 -3 6152 6001 2561 50 0 3 chr15 74194966 74195267 -27185254 - AluY SINE Alu -11 300 1 488 158 0 12 chr15 74195267 74195349 -27185172 + MER45A DNA AcHobo 98 178 0 194 243 288 18 chr15 74195529 74195640 -27184881 + MIR3 SINE MIR 3 143 -65 197 238 219 19 chr15 74195883 74195988 -27184533 + MIR3 SINE MIR 5 130 -78 395 239 134 11 chr15 74196532 74196755 -27183766 + MIR3 SINE MIR 2 256 -6 1956 213 60 35 chr15 74197408 74197929 -27182592 - L1ME1 LINE L1 -59 6107 5574 1426 208 35 10 chr15 74199338 74199627 -27180894 - AluJo SINE Alu -16 296 1 2323 233 67 11 chr15 74199636 74200267 -27180254 - L1MC4 LINE L1 -142 7900 7235 308 275 0 14 chr15 74200682 74200751 -27179770 + L2 LINE L2 2987 3054 -218 26 30 0 0 chr15 74200863 74200896 -27179625 + AT_rich Low_complexity Low_complexity 1 33 0 1950 241 115 77 chr15 74201090 74201702 -27178819 - L1MEc LINE L1 -2365 3850 3263 510 111 0 0 chr15 74201702 74201774 -27178747 - L1MA9 LINE L1 -4 6308 6237 1950 241 115 77 chr15 74201774 74201966 -27178555 - L1MEc LINE L1 -2952 3263 3080 974 211 24 0 chr15 74201966 74202132 -27178389 - FAM SINE Alu -4 171 2 1950 241 115 77 chr15 74202132 74202157 -27178364 - L1MEc LINE L1 -3135 3080 3057 5575 57 19 4 chr15 74202157 74202837 -27177684 - L1PA8 LINE L1 -1 6171 5482 1950 241 115 77 chr15 74202837 74203561 -27176960 - L1MEc LINE L1 -3158 3057 2252 2144 112 0 3 chr15 74203561 74203857 -27176664 - AluY SINE Alu -16 295 1 1950 241 115 77 chr15 74203857 74204148 -27176373 - L1MEc LINE L1 -3963 2252 1974 7702 118 22 5 chr15 74204197 74206167 -27174354 + L1MA2 LINE L1 4293 6300 -4 199 341 95 8 chr15 74206349 74206475 -27174046 + L2 LINE L2 2385 2521 -793 * 402 289 156 47 chr15 74206473 74206729 -27173792 - L3 LINE CR1 -23 1554 1271 1569 253 136 32 chr15 74206776 74207314 -27173207 - MLT1G1 LTR MaLR 0 595 2 189 257 114 29 chr15 74208083 74208153 -27172368 + MIR SINE MIR 23 98 -110 1247 193 0 57 chr15 74208155 74208419 -27172102 - AluJb SINE Alu -63 249 1 28 29 0 0 chr15 74208621 74208656 -27171865 + AT_rich Low_complexity Low_complexity 1 35 0 252 333 64 25 chr15 74208738 74208942 -27171579 + L2 LINE L2 2290 2501 -813 781 314 166 12 chr15 74209390 74210015 -27170506 - L2 LINE L2 -4 3309 2592 186 111 28 28 chr15 74210174 74210210 -27170311 - MIR SINE MIR -123 139 104 1836 180 7 0 chr15 74210618 74210913 -27169608 + AluJo SINE Alu 1 297 -15 2228 77 10 19 chr15 74211028 74211341 -27169180 - AluY SINE Alu -1 310 1 2391 109 0 0 chr15 74211342 74211654 -27168867 - AluSx SINE Alu 0 312 1 2348 85 0 7 chr15 74211901 74212194 -27168327 - AluSc SINE Alu -18 291 1 292 331 95 12 chr15 74212236 74212405 -27168116 - L3 LINE CR1 -14 1563 1381 1052 165 0 0 chr15 74212405 74212563 -27167958 - FRAM SINE Alu -18 158 1 691 287 94 65 chr15 74212641 74213118 -27167403 - L3 LINE CR1 -312 1265 775 * 3090 224 65 91 chr15 74213101 74214515 -27166006 + L2 LINE L2 1932 3313 0 2248 193 54 17 chr15 74214538 74215021 -27165500 + MLT1D LTR MaLR 5 505 0 410 303 30 35 chr15 74217111 74217337 -27163184 + MIR3 SINE MIR 20 237 -25 198 103 0 0 chr15 74217714 74217743 -27162778 + (TA)n Simple_repeat Simple_repeat 2 30 0 232 201 21 56 chr15 74217765 74217909 -27162612 + (CACAC)n Simple_repeat Simple_repeat 1 139 0 2324 75 0 3 chr15 74218898 74219190 -27161331 - AluSc SINE Alu -18 291 1 305 301 13 9 chr15 74219263 74219418 -27161103 - MIR3 SINE MIR -12 196 3 2450 162 71 32 chr15 74219526 74220072 -27160449 + L1MB4 LINE L1 5570 6142 -38 1719 158 92 0 chr15 74220072 74220356 -27160165 + AluSx SINE Alu 3 312 0 2450 162 71 32 chr15 74220356 74220397 -27160124 + L1MB4 LINE L1 6142 6180 0 292 243 0 0 chr15 74220498 74220568 -27159953 + L1MC3 LINE L1 7678 7747 -38 2166 121 0 10 chr15 74220571 74220884 -27159637 + AluSg SINE Alu 1 310 0 2231 107 3 0 chr15 74220923 74221241 -27159280 - AluSp SINE Alu 0 319 1 2665 43 0 0 chr15 74221249 74221554 -27158967 - AluY SINE Alu -6 305 1 409 173 37 0 chr15 74221557 74221638 -27158883 - L1MB3 LINE L1 -46 6137 6054 284 263 111 0 chr15 74221710 74221809 -27158712 + L1ME LINE L1 5536 5645 -517 2188 104 7 0 chr15 74221909 74222197 -27158324 - AluSp SINE Alu -23 290 1 887 228 0 130 chr15 74224111 74224387 -27156134 - MIR SINE MIR -21 241 2 435 239 104 12 chr15 74224397 74224560 -27155961 + L1M3 LINE L1 3980 4157 -1989 2457 76 0 16 chr15 74224562 74224878 -27155643 + AluY SINE Alu 1 311 0 963 253 85 48 chr15 74226033 74226688 -27153833 + L1M3 LINE L1 4587 5297 -874 1526 123 0 9 chr15 74226688 74226908 -27153613 + AluJb SINE Alu 84 301 -11 963 253 85 48 chr15 74226908 74227082 -27153439 + L1M3 LINE L1 5297 5463 -708 3365 75 2 0 chr15 74227227 74227683 -27152838 - L1PA6 LINE L1 -252 5902 5446 5381 129 21 8 chr15 74227684 74228631 -27151890 + L1MA6 LINE L1 5342 6300 0 1718 190 17 0 chr15 74228783 74229078 -27151443 + AluJo SINE Alu 1 300 -12 7263 233 51 66 chr15 74229091 74231565 -27148956 + L1PA13 LINE L1 1 2488 -4309 2126 98 41 20 chr15 74231565 74231860 -27148661 - AluSx SINE Alu -11 301 1 6279 90 13 2 chr15 74231963 74232957 -27147564 + L1PA10 LINE L1 5151 6156 -12 1669 199 31 0 chr15 74232974 74233023 -27147498 - L1 LINE L1 -796 5350 5304 225 0 0 0 chr15 74233023 74233048 -27147473 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1669 199 31 0 chr15 74233048 74233390 -27147131 - L1 LINE L1 -842 5304 4947 4573 50 19 2 chr15 74233400 74233984 -27146537 - L1PA4 LINE L1 -1 6154 5561 4120 32 0 0 chr15 74233985 74234513 -27146008 - L1PA4 LINE L1 -776 5370 4843 574 270 101 30 chr15 74234513 74234551 -27145970 + L1ME LINE L1 4390 4424 -1722 3388 115 20 0 chr15 74234551 74235055 -27145466 + MER75 DNA T2_type 1 514 0 574 270 101 30 chr15 74235055 74235312 -27145209 + L1ME LINE L1 4424 4706 -1440 231 185 12 25 chr15 74235498 74235579 -27144942 + L1ME LINE L1 4968 5047 -1099 618 298 90 24 chr15 74235810 74236220 -27144301 + L1ME LINE L1 5330 5766 -396 351 304 11 11 chr15 74236284 74236376 -27144145 - L2 LINE L2 0 3272 3181 261 57 0 0 chr15 74236499 74236534 -27143987 + (GA)n Simple_repeat Simple_repeat 2 36 0 659 152 0 0 chr15 74236671 74236770 -27143751 + AluJ/FLAM SINE Alu 1 99 -213 25 0 0 0 chr15 74236873 74236898 -27143623 + AT_rich Low_complexity Low_complexity 1 25 0 749 308 65 42 chr15 74237178 74237658 -27142863 - L1MEc LINE L1 -5867 529 39 972 245 89 81 chr15 74237755 74238274 -27142247 + L1MC5 LINE L1 6698 7220 -741 3593 193 46 16 chr15 74238331 74239398 -27141123 - L1MB8 LINE L1 -18 6160 5064 611 319 38 13 chr15 74239443 74239681 -27140840 + LTR67 LTR ERVL 115 358 -199 27 0 0 0 chr15 74240123 74240150 -27140371 + AT_rich Low_complexity Low_complexity 1 27 0 292 71 36 0 chr15 74240574 74240630 -27139891 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 2178 109 0 0 chr15 74240637 74240920 -27139601 - AluSq SINE Alu -30 283 1 397 266 164 0 chr15 74240927 74241055 -27139466 + MIR3 SINE MIR 50 198 -10 29 60 0 0 chr15 74241917 74241967 -27138554 + AT_rich Low_complexity Low_complexity 1 50 0 2293 108 0 0 chr15 74242023 74242320 -27138201 - AluSg1 SINE Alu -12 297 1 234 250 71 0 chr15 74242322 74242406 -27138115 - L1ME LINE L1 -294 5827 5738 317 219 82 74 chr15 74242442 74242698 -27137823 - L1ME4a LINE L1 -21 6100 5843 1639 145 4 4 chr15 74242752 74242994 -27137527 - AluJo SINE Alu -22 290 49 22 0 0 0 chr15 74242997 74243019 -27137502 + AT_rich Low_complexity Low_complexity 1 22 0 376 264 41 41 chr15 74243105 74243302 -27137219 - L1ME4a LINE L1 -298 5823 5627 2414 66 7 3 chr15 74243316 74243619 -27136902 + AluY SINE Alu 1 304 -7 11619 25 2 1 chr15 74244431 74246571 -27133950 - L1PA3 LINE L1 0 6155 4014 483 203 50 2 chr15 74246691 74246801 -27133720 - MIR SINE MIR -62 146 32 663 193 42 0 chr15 74246824 74246943 -27133578 - FLAM_A SINE Alu -9 124 1 362 327 107 7 chr15 74247171 74247321 -27133200 - MIR3 SINE MIR -7 201 37 2492 74 3 0 chr15 74247609 74247919 -27132602 - AluY SINE Alu 0 311 1 423 0 0 0 chr15 74249575 74249589 -27130932 + (TG)n Simple_repeat Simple_repeat 1 61 0 423 0 0 0 chr15 74249589 74249636 -27130885 + (TG)n Simple_repeat Simple_repeat 2 48 0 2481 85 0 0 chr15 74250028 74250334 -27130187 - AluSx SINE Alu -6 306 1 24 32 0 0 chr15 74251613 74251644 -27128877 + AT_rich Low_complexity Low_complexity 1 31 0 29 0 0 0 chr15 74254294 74254323 -27126198 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr15 74254601 74254625 -27125896 + (CTG)n Simple_repeat Simple_repeat 3 26 0 204 167 0 0 chr15 74254626 74254674 -27125847 + CT-rich Low_complexity Low_complexity 3 50 0 2138 112 22 22 chr15 74255474 74255786 -27124735 - AluSx SINE Alu 0 312 1 1752 181 3 16 chr15 74256748 74257051 -27123470 + AluJb SINE Alu 1 299 -13 242 260 151 0 chr15 74258240 74258313 -27122208 - MIR SINE MIR -83 125 42 24 32 0 0 chr15 74258625 74258656 -27121865 + AT_rich Low_complexity Low_complexity 1 31 0 2196 108 0 19 chr15 74259260 74259425 -27121096 - AluSp SINE Alu -5 308 141 2128 104 0 4 chr15 74259425 74259703 -27120818 + AluSq SINE Alu 2 278 -35 207 0 0 0 chr15 74259710 74259733 -27120788 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2196 108 0 19 chr15 74259733 74259873 -27120648 - AluSp SINE Alu -178 135 1 357 319 43 0 chr15 74259888 74260004 -27120517 - L2 LINE L2 0 3272 3152 385 341 23 0 chr15 74260035 74260164 -27120357 - L2 LINE L2 0 3313 3182 1792 199 0 0 chr15 74260724 74261026 -27119495 + AluJb SINE Alu 1 302 -10 724 216 0 8 chr15 74261261 74261386 -27119135 + FLAM_A SINE Alu 1 124 -9 766 274 68 24 chr15 74261715 74262007 -27118514 - MLT1C LTR MaLR -2 465 161 1288 138 0 0 chr15 74262011 74262200 -27118321 + AluSx SINE Alu 4 192 -120 225 263 88 18 chr15 74262373 74262487 -27118034 + LTR67 LTR ERVL 436 557 0 264 303 143 11 chr15 74262496 74262671 -27117850 + L1ME3A LINE L1 5386 5583 -2202 323 255 78 65 chr15 74262732 74263038 -27117483 + L1ME3A LINE L1 5555 5864 -300 28 29 0 0 chr15 74263406 74263441 -27117080 + AT_rich Low_complexity Low_complexity 1 35 0 394 293 110 32 chr15 74263455 74263652 -27116869 + L1MC/D LINE L1 5213 5430 -811 2119 107 0 49 chr15 74263652 74263979 -27116542 + AluSx SINE Alu 1 311 -1 394 293 110 32 chr15 74263979 74264054 -27116467 + L1MC/D LINE L1 5430 5498 -743 431 272 93 11 chr15 74264654 74264825 -27115696 - MIR3 SINE MIR -1 207 43 449 248 117 7 chr15 74267031 74267168 -27113353 + MIR3 SINE MIR 38 189 -19 21 36 0 0 chr15 74267811 74267839 -27112682 + AT_rich Low_complexity Low_complexity 1 28 0 342 45 0 0 chr15 74268148 74268192 -27112329 + (TG)n Simple_repeat Simple_repeat 2 45 0 270 212 222 20 chr15 74268401 74268500 -27112021 - MIR3 SINE MIR -4 204 86 281 319 106 0 chr15 74268991 74269104 -27111417 - L2 LINE L2 -1 3271 3147 741 209 0 27 chr15 74269127 74269275 -27111246 - L2 LINE L2 0 3313 3170 328 336 100 0 chr15 74269287 74269507 -27111014 - L2 LINE L2 -334 2938 2699 361 308 0 92 chr15 74270987 74271117 -27109404 - L2 LINE L2 -2 3270 3153 2165 108 0 0 chr15 74271560 74271855 -27108666 + AluSg SINE Alu 1 295 -15 2234 88 3 0 chr15 74271998 74272293 -27108228 + AluSq SINE Alu 1 296 -17 490 277 18 0 chr15 74272837 74272949 -27107572 + L2 LINE L2 3154 3267 -5 27 0 0 0 chr15 74273233 74273260 -27107261 + AT_rich Low_complexity Low_complexity 1 27 0 342 271 47 19 chr15 74273809 74273916 -27106605 + MIR SINE MIR 32 141 -67 303 285 145 47 chr15 74275182 74275354 -27105167 - MIR SINE MIR -41 221 33 1378 203 53 53 chr15 74275510 74275884 -27104637 + MLT1A2 LTR MaLR 1 374 0 4910 107 48 22 chr15 74276176 74276946 -27103575 - L1PB4 LINE L1 -8 6148 5359 296 180 21 16 chr15 74276978 74277057 -27103464 + L1ME3A LINE L1 6039 6118 -46 351 0 0 0 chr15 74277081 74277120 -27103401 + (TG)n Simple_repeat Simple_repeat 1 39 0 313 289 48 0 chr15 74277160 74277243 -27103278 - MIR SINE MIR -85 123 37 24 91 0 0 chr15 74280692 74280758 -27099763 + AT_rich Low_complexity Low_complexity 1 66 0 1501 123 127 11 chr15 74281521 74281789 -27098732 + AluSg1 SINE Alu 1 299 -10 720 241 51 95 chr15 74281845 74282161 -27098360 - L2 LINE L2 0 3313 3012 270 0 0 0 chr15 74283874 74283904 -27096617 + (CA)n Simple_repeat Simple_repeat 1 30 0 1046 157 11 0 chr15 74285047 74285225 -27095296 - FAM SINE Alu 0 49 1 253 316 26 44 chr15 74294905 74295019 -27085502 - MIR3 SINE MIR -16 192 81 28 71 0 0 chr15 74295769 74295825 -27084696 + GC_rich Low_complexity Low_complexity 1 56 0 29 0 0 0 chr15 74297950 74297979 -27082542 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr15 74298257 74298281 -27082240 + (CTG)n Simple_repeat Simple_repeat 3 26 0 204 167 0 0 chr15 74298282 74298330 -27082191 + CT-rich Low_complexity Low_complexity 3 50 0 2396 71 0 0 chr15 74299130 74299440 -27081081 - AluSg SINE Alu 0 310 1 747 236 37 11 chr15 74299634 74299825 -27080696 + MIR SINE MIR 63 258 -4 418 283 143 18 chr15 74300405 74300628 -27079893 - MIR SINE MIR -6 256 6 205 238 219 19 chr15 74301172 74301277 -27079244 - MIR3 SINE MIR -78 130 5 200 243 288 18 chr15 74301521 74301632 -27078889 - MIR3 SINE MIR -65 143 3 475 158 0 12 chr15 74301812 74301894 -27078627 - MER45A DNA AcHobo 0 178 98 2448 50 0 3 chr15 74301894 74302195 -27078326 + AluY SINE Alu 1 300 -11 1300 13 7 0 chr15 74302195 74302346 -27078175 + L1PA4 LINE L1 6001 6152 -3 252 250 45 45 chr15 74302419 74302439 -27078082 - MER45A DNA AcHobo -1456 125 106 2032 123 7 0 chr15 74302439 74302741 -27077780 + AluSx SINE Alu 1 304 -8 252 250 45 45 chr15 74302741 74302808 -27077713 - MER45A DNA AcHobo -1474 107 38 189 281 188 0 chr15 74302820 74302916 -27077605 - MIR SINE MIR -92 170 57 1784 147 3 3 chr15 74303228 74303513 -27077008 + AluSx SINE Alu 1 285 -27 651 108 0 0 chr15 74303513 74303633 -27076888 + (TA)n Simple_repeat Simple_repeat 2 121 0 194 225 25 0 chr15 74306408 74306448 -27074073 - L2 LINE L2 -18 3254 3214 1701 151 17 7 chr15 74306538 74306829 -27073692 + AluSx SINE Alu 12 305 -7 518 294 256 9 chr15 74306830 74307170 -27073351 - MLT1L LTR MaLR -50 565 142 228 158 26 0 chr15 74307191 74307229 -27073292 + MER63 DNA MER1_type 1 39 -1022 2157 117 3 0 chr15 74307230 74307537 -27072984 + AluSx SINE Alu 1 308 -4 1636 140 16 57 chr15 74307547 74307862 -27072659 + AluJb SINE Alu 1 302 -10 1209 217 121 23 chr15 74308028 74308565 -27071956 - MLT1E2 LTR MaLR 0 626 1 684 245 41 62 chr15 74308565 74308855 -27071666 + L1ME LINE L1 5402 5685 -436 1752 170 3 19 chr15 74308878 74309195 -27071326 - AluSx SINE Alu 0 312 1 224 219 31 78 chr15 74309203 74309267 -27071254 - L2 LINE L2 -49 3264 3204 1233 102 49 24 chr15 74310235 74310440 -27070081 - L1PA16 LINE L1 -1 6165 5956 1560 171 4 25 chr15 74310462 74310743 -27069778 - AluJb SINE Alu -18 294 20 1465 67 6 0 chr15 74310806 74310986 -27069535 + AluY SINE Alu 1 181 -130 532 104 0 0 chr15 74310989 74311056 -27069465 + AluY SINE Alu 224 290 -19 261 119 0 0 chr15 74311056 74311098 -27069423 + (GA)n Simple_repeat Simple_repeat 1 42 0 1206 188 116 11 chr15 74311154 74311431 -27069090 + MLT1F LTR MaLR 235 540 -2 2110 141 0 0 chr15 74311473 74311777 -27068744 + AluSx SINE Alu 1 304 -8 2001 152 3 0 chr15 74311805 74312150 -27068371 - AluJb SINE Alu 0 346 1 3865 139 10 68 chr15 74313153 74313655 -27066866 - L1MB8 LINE L1 -10 6168 5638 183 42 0 0 chr15 74313655 74313679 -27066842 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2083 125 0 0 chr15 74313679 74313960 -27066561 - AluSx SINE Alu -31 281 1 3865 139 10 68 chr15 74313960 74314173 -27066348 - L1MB8 LINE L1 -538 5640 5494 865 207 10 10 chr15 74314174 74314367 -27066154 + L1MB8 LINE L1 5985 6177 -1 487 232 50 0 chr15 74314477 74314576 -27065945 - L2 LINE L2 0 3313 3210 582 247 0 45 chr15 74314614 74314768 -27065753 - L2 LINE L2 -252 3061 2915 1645 174 53 0 chr15 74314768 74315050 -27065471 - AluJo SINE Alu -15 297 1 1796 125 91 0 chr15 74315064 74315328 -27065193 - AluSx SINE Alu -24 288 1 1815 131 88 0 chr15 74315370 74315644 -27064877 + AluSx SINE Alu 1 298 -14 795 155 131 12 chr15 74315647 74315815 -27064706 - Cheshire DNA MER1_type -1759 661 474 289 241 36 0 chr15 74315830 74315913 -27064608 + LTR16A LTR ERVL 301 386 -64 456 276 70 0 chr15 74316148 74316304 -27064217 + HERV16 LTR ERVL 234 400 -4596 1565 295 14 7 chr15 74316332 74316773 -27063748 + HERV16 LTR ERVL 2349 2792 -2204 317 299 11 2 chr15 74316771 74316893 -27063628 + HERV16 LTR ERVL 3219 3323 -2331 * 3174 325 58 33 chr15 74316903 74318766 -27061755 + HERV16 LTR ERVL 2847 4755 -1009 373 245 29 0 chr15 74318770 74318872 -27061649 + HERV16 LTR ERVL 4882 4986 -778 324 252 43 17 chr15 74319071 74319186 -27061335 + HERV16 LTR ERVL 4789 4906 -90 2011 147 0 28 chr15 74319357 74319676 -27060845 - AluSx SINE Alu -2 310 1 2225 108 0 10 chr15 74319737 74320042 -27060479 + AluSx SINE Alu 1 302 -10 1795 141 57 3 chr15 74320827 74321110 -27059411 + AluJo SINE Alu 1 298 -14 191 200 0 20 chr15 74321148 74321198 -27059323 - L2 LINE L2 -338 2975 2927 1041 255 97 33 chr15 74321212 74321819 -27058702 - L2 LINE L2 -85 3228 2493 460 278 8 133 chr15 74321939 74322035 -27058486 - L2 LINE L2 -2 3270 3164 2470 46 0 16 chr15 74322035 74322341 -27058180 + AluY SINE Alu 1 301 -10 460 278 8 133 chr15 74322341 74322492 -27058029 - L2 LINE L2 -108 3164 3054 216 97 0 0 chr15 74323873 74323904 -27056617 + (T)n Simple_repeat Simple_repeat 1 31 0 243 0 0 0 chr15 74323994 74324021 -27056500 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1715 133 0 63 chr15 74324023 74324324 -27056197 - AluSx SINE Alu -30 282 1 2408 39 0 7 chr15 74324795 74325106 -27055415 - AluY SINE Alu 0 309 1 3943 200 90 14 chr15 74325230 74326252 -27054269 - L1MC4 LINE L1 0 8042 6943 271 55 110 164 chr15 74326440 74326489 -27054032 + L1MB2 LINE L1 6075 6120 -51 1808 163 10 0 chr15 74326489 74326783 -27053738 + AluJb SINE Alu 1 297 -15 271 55 110 164 chr15 74326783 74326806 -27053715 + L1MB2 LINE L1 6120 6143 -28 2425 94 3 0 chr15 74327709 74328017 -27052504 + AluSg SINE Alu 1 309 -1 678 158 50 33 chr15 74328261 74328381 -27052140 + FLAM_A SINE Alu 1 122 -11 415 305 52 19 chr15 74328419 74328632 -27051889 - L2 LINE L2 -1357 1957 1738 426 323 40 0 chr15 74328909 74329033 -27051488 - L2 LINE L2 -5 3267 3139 2327 85 10 0 chr15 74329204 74329510 -27051011 - AluY SINE Alu -2 309 1 1277 199 8 25 chr15 74329593 74329829 -27050692 - AluJo SINE Alu -12 300 69 5712 130 43 5 chr15 74329831 74330943 -27049578 - L1PA15 LINE L1 -20 6145 5005 2195 115 0 10 chr15 74330944 74331249 -27049272 - AluSx SINE Alu -9 303 2 183 42 0 0 chr15 74331257 74331281 -27049240 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 791 182 0 0 chr15 74331298 74331419 -27049102 + FLAM_A SINE Alu 6 126 -16 5498 145 68 31 chr15 74331420 74332531 -27047990 - L1MC1 LINE L1 0 6333 5184 1879 134 18 0 chr15 74332539 74332844 -27047677 - AluSx SINE Alu 0 310 1 200 316 76 13 chr15 74332879 74332958 -27047563 - L2 LINE L2 -21 3251 3168 870 164 178 44 chr15 74333098 74333323 -27047198 - MIR SINE MIR -5 257 3 592 317 116 46 chr15 74333323 74334116 -27046405 - L2 LINE L2 -225 3047 2201 502 311 75 65 chr15 74334278 74334693 -27045828 - L2 LINE L2 -1559 1755 1332 1751 188 3 0 chr15 74334693 74334991 -27045530 + AluJo SINE Alu 4 302 -10 502 311 75 65 chr15 74334991 74335109 -27045412 - L2 LINE L2 -1982 1332 1217 604 225 136 31 chr15 74335580 74335771 -27044750 + MIR SINE MIR 12 222 -40 2152 125 3 3 chr15 74335930 74336227 -27044294 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr15 74336432 74336453 -27044068 + AT_rich Low_complexity Low_complexity 1 21 0 229 96 39 19 chr15 74336866 74336918 -27043603 + (TTTA)n Simple_repeat Simple_repeat 3 55 0 184 354 24 39 chr15 74337099 74337226 -27043295 + L2 LINE L2 1086 1210 -2104 2255 80 6 26 chr15 74338026 74338339 -27042182 + AluY SINE Alu 1 307 -4 24 32 0 0 chr15 74338392 74338423 -27042098 + AT_rich Low_complexity Low_complexity 1 31 0 222 37 0 0 chr15 74339147 74339174 -27041347 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1900 164 3 0 chr15 74339424 74339711 -27040810 + AluSx SINE Alu 1 288 -24 2156 108 7 0 chr15 74341120 74341415 -27039106 - AluSq SINE Alu -16 297 1 2431 58 6 10 chr15 74342490 74342802 -27037719 - AluY SINE Alu 0 311 1 1863 114 0 11 chr15 74342805 74343067 -27037454 - AluSx SINE Alu -10 302 44 1489 224 0 0 chr15 74343067 74343337 -27037184 - AluJo SINE Alu -40 272 1 302 268 193 38 chr15 74343611 74343633 -27036888 - L1MC4a LINE L1 -1929 5879 5862 1707 148 43 46 chr15 74343633 74343937 -27036584 + AluJb SINE Alu 1 303 -9 302 268 193 38 chr15 74343937 74344179 -27036342 - L1MC4a LINE L1 -1946 5862 5574 1771 159 0 47 chr15 74345041 74345362 -27035159 + AluJo SINE Alu 5 310 -2 2020 126 23 23 chr15 74345531 74345841 -27034680 - AluSx SINE Alu -2 310 1 1718 181 3 16 chr15 74346803 74347106 -27033415 + AluJb SINE Alu 1 299 -13 239 260 151 0 chr15 74348295 74348368 -27032153 - MIR SINE MIR -83 125 42 24 32 0 0 chr15 74348680 74348711 -27031810 + AT_rich Low_complexity Low_complexity 1 31 0 2192 108 0 19 chr15 74349315 74349480 -27031041 - AluSp SINE Alu -5 308 141 2132 104 0 4 chr15 74349480 74349758 -27030763 + AluSq SINE Alu 2 278 -35 207 0 0 0 chr15 74349765 74349788 -27030733 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2192 108 0 19 chr15 74349788 74349928 -27030593 - AluSp SINE Alu -178 135 1 347 319 43 0 chr15 74349943 74350059 -27030462 - L2 LINE L2 0 3272 3152 369 341 23 0 chr15 74350090 74350219 -27030302 - L2 LINE L2 0 3313 3182 1767 199 0 0 chr15 74350779 74351081 -27029440 + AluJb SINE Alu 1 302 -10 772 216 0 8 chr15 74351316 74351441 -27029080 + FLAM_A SINE Alu 1 124 -9 267 279 0 0 chr15 74351712 74351773 -27028748 - L2 LINE L2 -1 3312 3252 1527 190 151 65 chr15 74351773 74352070 -27028451 - MLT1D LTR MaLR -2 503 150 2098 148 0 0 chr15 74352070 74352373 -27028148 + AluSx SINE Alu 4 306 -6 1527 190 151 65 chr15 74352373 74352538 -27027983 - MLT1D LTR MaLR -355 150 1 1792 109 0 4 chr15 74352603 74352842 -27027679 + AluSx SINE Alu 60 297 -15 1074 101 0 0 chr15 74352966 74353104 -27027417 + AluSq/x SINE Alu 1 138 -174 1618 149 20 0 chr15 74353105 74353353 -27027168 + AluSx SINE Alu 50 302 -10 5252 232 104 92 chr15 74353353 74354208 -27026313 - L2 LINE L2 -284 3029 2186 1200 166 0 0 chr15 74354208 74354383 -27026138 + FAM SINE Alu 1 175 0 5252 232 104 92 chr15 74354383 74354697 -27025824 - L2 LINE L2 -1127 2186 1877 1981 163 0 3 chr15 74354697 74354998 -27025523 + AluJb SINE Alu 1 300 -12 290 232 105 21 chr15 74355002 74355097 -27025424 + L1ME3A LINE L1 6061 6163 -7 5252 232 104 92 chr15 74355097 74356174 -27024347 - L2 LINE L2 -1438 1875 655 10940 154 114 39 chr15 74356175 74356474 -27024047 + L1MCa LINE L1 22 297 -6310 2103 119 0 0 chr15 74356474 74356752 -27023769 + AluSx SINE Alu 1 278 -34 10940 154 114 39 chr15 74356752 74358891 -27021630 + L1MCa LINE L1 297 2680 -3927 642 286 105 8 chr15 74358990 74359256 -27021265 - L2 LINE L2 -3014 300 9 2069 105 7 20 chr15 74360669 74360684 -27019837 - AluSg1 SINE Alu -18 291 277 303 0 26 0 chr15 74360684 74360722 -27019799 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 2069 105 7 20 chr15 74360722 74361001 -27019520 - AluSg1 SINE Alu -32 277 1 562 256 96 4 chr15 74361014 74361244 -27019277 - L1M4 LINE L1 -797 5349 5099 213 39 0 0 chr15 74361444 74361470 -27019051 + (TA)n Simple_repeat Simple_repeat 2 27 0 1008 210 0 0 chr15 74361470 74361632 -27018889 - FAM SINE Alu -13 162 1 2234 110 7 3 chr15 74361756 74362065 -27018456 + AluY SINE Alu 1 310 -1 234 0 0 0 chr15 74362335 74362361 -27018160 + (TG)n Simple_repeat Simple_repeat 2 27 0 183 239 0 0 chr15 74362366 74362412 -27018109 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 1001 224 150 24 chr15 74362443 74363086 -27017435 - L1MD3 LINE L1 -9 7986 7242 1001 232 16 42 chr15 74363086 74363392 -27017129 - AluSx SINE Alu 0 302 5 1854 113 0 0 chr15 74364035 74364282 -27016239 - AluSx SINE Alu -22 290 44 1408 234 0 0 chr15 74364283 74364552 -27015969 - AluJo SINE Alu -43 269 1 302 268 193 38 chr15 74364826 74364848 -27015673 - L1MD3 LINE L1 -1929 5879 5862 1707 148 43 46 chr15 74364848 74365152 -27015369 + AluJb SINE Alu 1 303 -9 302 268 193 38 chr15 74365152 74365394 -27015127 - L1MD3 LINE L1 -1946 5862 5574 1771 159 0 47 chr15 74366256 74366577 -27013944 + AluJo SINE Alu 5 310 -2 2020 126 23 23 chr15 74366746 74367056 -27013465 - AluSx SINE Alu -2 310 1 1718 181 3 16 chr15 74368018 74368321 -27012200 + AluJb SINE Alu 1 299 -13 239 260 151 0 chr15 74369510 74369583 -27010938 - MIR SINE MIR -83 125 42 24 32 0 0 chr15 74369895 74369926 -27010595 + AT_rich Low_complexity Low_complexity 1 31 0 2125 141 3 0 chr15 74370531 74370837 -27009684 - AluSq SINE Alu -6 307 1 1686 182 3 10 chr15 74371616 74371918 -27008603 + AluJo SINE Alu 1 300 -12 246 186 0 57 chr15 74372078 74372148 -27008373 + L1ME4a LINE L1 6056 6121 0 278 326 164 36 chr15 74372214 74372518 -27008003 - L2 LINE L2 -725 2589 2247 2406 64 6 10 chr15 74372573 74372885 -27007636 + AluY SINE Alu 1 311 0 2156 108 7 0 chr15 74373960 74374255 -27006266 + AluSq SINE Alu 1 297 -16 1900 164 3 0 chr15 74375667 74375954 -27004567 - AluSx SINE Alu -24 288 1 222 37 0 0 chr15 74376204 74376231 -27004290 + (CAA)n Simple_repeat Simple_repeat 1 27 0 24 32 0 0 chr15 74376955 74376986 -27003535 + AT_rich Low_complexity Low_complexity 1 31 0 2255 80 6 26 chr15 74377039 74377352 -27003169 - AluY SINE Alu -4 307 1 184 354 24 39 chr15 74378152 74378279 -27002242 - L2 LINE L2 -2104 1210 1086 229 96 39 19 chr15 74378460 74378512 -27002009 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 21 0 0 0 chr15 74378925 74378946 -27001575 + AT_rich Low_complexity Low_complexity 1 21 0 2127 128 3 3 chr15 74379151 74379448 -27001073 - AluSx SINE Alu -15 297 1 604 225 136 31 chr15 74379607 74379798 -27000723 - MIR SINE MIR -40 222 12 502 311 75 65 chr15 74380269 74380387 -27000134 + L2 LINE L2 1217 1332 -1982 1751 188 3 0 chr15 74380387 74380685 -26999836 - AluJo SINE Alu -10 302 4 502 311 75 65 chr15 74380685 74381100 -26999421 + L2 LINE L2 1332 1755 -1559 592 317 116 46 chr15 74381262 74382055 -26998466 + L2 LINE L2 2201 3047 -225 870 164 178 44 chr15 74382055 74382280 -26998241 + MIR SINE MIR 3 257 -5 200 316 76 13 chr15 74382420 74382499 -26998022 + L2 LINE L2 3168 3251 -21 1880 134 18 0 chr15 74382534 74382839 -26997682 + AluSx SINE Alu 1 310 0 5456 147 69 32 chr15 74382847 74383957 -26996564 + L1MC1 LINE L1 5184 6333 0 791 182 0 0 chr15 74383958 74384079 -26996442 - FLAM_A SINE Alu -16 126 6 183 42 0 0 chr15 74384096 74384120 -26996401 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2195 115 0 10 chr15 74384128 74384433 -26996088 + AluSx SINE Alu 2 303 -9 5590 135 43 5 chr15 74384434 74385546 -26994975 + L1PA15 LINE L1 5005 6145 -20 1277 199 8 25 chr15 74385548 74385784 -26994737 + AluJo SINE Alu 69 300 -12 2327 85 10 0 chr15 74385867 74386173 -26994348 + AluY SINE Alu 1 309 -2 426 323 40 0 chr15 74386344 74386468 -26994053 + L2 LINE L2 3139 3267 -5 415 305 52 19 chr15 74386745 74386958 -26993563 + L2 LINE L2 1738 1957 -1357 678 158 50 33 chr15 74386996 74387116 -26993405 - FLAM_A SINE Alu -11 122 1 2425 94 3 0 chr15 74387360 74387668 -26992853 - AluSg SINE Alu -1 309 1 271 55 110 164 chr15 74388571 74388594 -26991927 - L1MB2 LINE L1 -28 6143 6120 1808 163 10 0 chr15 74388594 74388888 -26991633 - AluJb SINE Alu -15 297 1 271 55 110 164 chr15 74388888 74388937 -26991584 - L1MB2 LINE L1 -51 6120 6075 4051 199 88 13 chr15 74389125 74390148 -26990373 + L1MC4 LINE L1 6943 8042 0 2170 80 0 30 chr15 74390272 74390573 -26989948 + AluY SINE Alu 1 292 -19 249 303 54 49 chr15 74391608 74391793 -26988728 + L1ME LINE L1 5699 5884 -278 1711 152 30 27 chr15 74392109 74392405 -26988116 - AluJo SINE Alu -15 297 1 37 69 0 0 chr15 74392518 74392590 -26987931 + AT_rich Low_complexity Low_complexity 1 72 0 629 179 17 145 chr15 74393751 74393930 -26986591 - AluJb SINE Alu -30 282 127 609 148 77 84 chr15 74394012 74394167 -26986354 + L1MCc LINE L1 776 929 -5494 599 203 258 26 chr15 74394179 74394467 -26986054 + L1MC4 LINE L1 7618 8000 -42 1101 206 0 0 chr15 74394467 74394642 -26985879 - FAM SINE Alu 0 175 1 599 203 258 26 chr15 74394642 74394698 -26985823 + L1MC4 LINE L1 8000 8042 0 25 31 0 0 chr15 74394910 74394942 -26985579 + AT_rich Low_complexity Low_complexity 1 32 0 901 288 92 29 chr15 74395072 74395451 -26985070 + L3 LINE CR1 692 1094 -483 1367 237 70 63 chr15 74395475 74396049 -26984472 + L1MCc LINE L1 886 1463 -5468 5221 207 95 30 chr15 74396089 74397540 -26982981 + Charlie1 DNA MER1_type 1 1356 -1405 2315 117 0 0 chr15 74397540 74397848 -26982673 + AluSq SINE Alu 1 308 -5 5221 207 95 30 chr15 74397848 74398242 -26982279 + Charlie1 DNA MER1_type 1356 2036 -725 1805 134 26 116 chr15 74398242 74398622 -26981899 + MER7A DNA MER2_type 2 345 -1 5221 207 95 30 chr15 74398622 74398644 -26981877 + Charlie1 DNA MER1_type 2036 2055 -706 7238 29 1 2 chr15 74398929 74399758 -26980763 + L1PA3 LINE L1 5337 6164 0 623 126 118 0 chr15 74403313 74403432 -26977089 + Charlie1 DNA MER1_type 2042 2174 -587 535 151 70 12 chr15 74403433 74403519 -26977002 + AluJ/FLAM SINE Alu 2 92 -220 908 271 129 45 chr15 74403519 74404040 -26976481 + L1MCc LINE L1 1543 2140 -4801 2480 72 3 0 chr15 74404040 74404346 -26976175 - AluY SINE Alu -4 307 1 908 271 129 45 chr15 74404346 74404528 -26975993 + L1MCc LINE L1 2140 2305 -4636 1869 81 33 93 chr15 74404558 74404890 -26975631 + LTR14B LTR ERVK 46 608 0 32066 65 14 5 chr15 74404890 74408187 -26972334 + HERVK14 LTR ERVK 1 3342 -2603 2356 81 0 3 chr15 74408187 74408482 -26972039 + AluY SINE Alu 1 294 -17 32066 65 14 5 chr15 74408482 74409209 -26971312 + HERVK14 LTR ERVK 3342 4061 -1884 5809 81 11 46 chr15 74409194 74410072 -26970449 + HERVK14 LTR ERVK 4803 5579 -366 * 1248 182 4 36 chr15 74410072 74410104 -26970417 + MER41C-int LTR ERV1 5729 5946 0 1392 88 0 42 chr15 74410104 74410297 -26970224 + HERVK14 LTR ERVK 5575 5759 -186 413 129 0 16 chr15 74410297 74410359 -26970162 + MER41C LTR ERV1 1 61 -493 524 48 0 0 chr15 74410359 74410422 -26970099 + HERVKC4 LTR ERVK 5822 5884 -61 912 316 9 9 chr15 74410465 74410794 -26969727 + HERVKC4 LTR ERVK 4928 5256 -6 1939 116 110 7 chr15 74410799 74411246 -26969275 + LTR14B LTR ERVK 1 608 0 449 207 54 0 chr15 74411246 74411357 -26969164 + L1ME LINE L1 3883 3999 -2147 * 1064 163 131 43 chr15 74411353 74411721 -26968800 + L1ME LINE L1 5179 5575 -589 2551 230 25 22 chr15 74411856 74412444 -26968077 + L1MC4 LINE L1 6499 7088 -954 2103 142 0 0 chr15 74412453 74412756 -26967765 + AluSx SINE Alu 1 303 -9 1083 221 147 20 chr15 74412756 74413398 -26967123 + L1MD3 LINE L1 7243 7986 -9 228 216 0 0 chr15 74413429 74413480 -26967041 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 234 0 0 0 chr15 74413480 74413506 -26967015 + (CA)n Simple_repeat Simple_repeat 2 27 0 2259 107 7 3 chr15 74413776 74414085 -26966436 - AluY SINE Alu -1 310 1 1008 210 0 0 chr15 74414209 74414371 -26966150 + FAM SINE Alu 1 162 -13 213 39 0 0 chr15 74414371 74414397 -26966124 + (TA)n Simple_repeat Simple_repeat 2 27 0 562 256 96 4 chr15 74414597 74414827 -26965694 + L1ME4a LINE L1 5099 5349 -797 2216 91 14 0 chr15 74414840 74415137 -26965384 + AluSq SINE Alu 1 301 -12 642 245 217 10 chr15 74415937 74416227 -26964294 + L1ME4a LINE L1 5734 6083 -38 2384 95 0 0 chr15 74416236 74416542 -26963979 - AluSx SINE Alu 0 312 7 2095 122 3 3 chr15 74417309 74417603 -26962918 + AluSg SINE Alu 1 294 -16 2239 74 13 20 chr15 74417690 74417988 -26962533 - AluSp SINE Alu -17 296 1 1757 171 31 0 chr15 74418146 74418438 -26962083 + AluJb SINE Alu 1 301 -11 31 0 0 0 chr15 74418816 74418847 -26961674 + AT_rich Low_complexity Low_complexity 1 31 0 2223 111 0 7 chr15 74418902 74419200 -26961321 + AluSx SINE Alu 1 296 -16 707 254 68 18 chr15 74421127 74421347 -26959174 - MIR SINE MIR -11 251 21 1313 234 145 40 chr15 74421818 74422267 -26958254 + MLT1G LTR MaLR 56 551 -39 217 341 0 23 chr15 74422432 74422564 -26957957 + GA-rich Low_complexity Low_complexity 4 132 0 25 0 0 0 chr15 74422645 74422670 -26957851 + AT_rich Low_complexity Low_complexity 1 25 0 246 176 0 0 chr15 74422874 74422925 -26957596 + T-rich Low_complexity Low_complexity 1 51 0 506 254 159 32 chr15 74424225 74424445 -26956076 + MIR SINE MIR 2 249 -13 204 184 0 0 chr15 74425549 74425598 -26954923 + T-rich Low_complexity Low_complexity 1 49 0 505 149 0 14 chr15 74425626 74425700 -26954821 - tRNA-Lys-AAG tRNA tRNA -3 73 1 286 271 178 66 chr15 74425810 74426068 -26954453 + MLT1K LTR MaLR 74 360 -228 398 303 30 35 chr15 74426859 74427085 -26953436 - MIR3 SINE MIR -25 237 20 2394 199 54 17 chr15 74429175 74429658 -26950863 - MLT1D LTR MaLR 0 505 5 3057 222 67 93 chr15 74429681 74431094 -26949427 - L2 LINE L2 0 3313 1932 663 287 94 65 chr15 74431077 74431554 -26948967 + L3 LINE CR1 775 1265 -312 * 1046 165 0 0 chr15 74431632 74431790 -26948731 + FRAM SINE Alu 1 158 -18 286 331 95 12 chr15 74431790 74431959 -26948562 + L3 LINE CR1 1381 1563 -14 2352 85 0 7 chr15 74432001 74432294 -26948227 + AluSc SINE Alu 1 291 -18 2397 106 0 0 chr15 74432541 74432853 -26947668 + AluSx SINE Alu 1 312 0 2317 61 3 17 chr15 74432854 74433150 -26947371 + AluY SINE Alu 1 292 -19 1786 289 44 29 chr15 74433182 74433798 -26946723 + L1M2c LINE L1 11 635 -6154 651 305 22 18 chr15 74434128 74434351 -26946170 + L1M2c LINE L1 1316 1539 -5250 1008 70 0 0 chr15 74434354 74434482 -26946039 + AluSp/q SINE Alu 186 313 0 2616 162 91 40 chr15 74434483 74434561 -26945960 + L1 LINE L1 3514 3587 -2559 2302 99 3 0 chr15 74434561 74434855 -26945666 + AluSp SINE Alu 1 295 -18 2616 162 91 40 chr15 74434855 74435345 -26945176 + L1 LINE L1 3587 4111 -2035 463 99 66 77 chr15 74435350 74435441 -26945080 - FLAM_C SINE Alu -2 141 52 1786 88 4 12 chr15 74435570 74435819 -26944702 - AluY SINE Alu -64 247 1 2004 140 0 10 chr15 74435827 74436119 -26944402 - AluJo SINE Alu -23 289 1 49 18 0 0 chr15 74436362 74436418 -26944103 + AT_rich Low_complexity Low_complexity 1 56 0 872 234 0 13 chr15 74436418 74436572 -26943949 - FRAM SINE Alu -14 152 1 22 0 0 0 chr15 74437534 74437556 -26942965 + AT_rich Low_complexity Low_complexity 1 22 0 2348 95 36 0 chr15 74437756 74438092 -26942429 + L1MA9 LINE L1 5960 6307 -5 466 281 49 30 chr15 74438103 74438267 -26942254 + MIR SINE MIR 67 233 -29 22 0 0 0 chr15 74438922 74438944 -26941577 + AT_rich Low_complexity Low_complexity 1 22 0 577 253 60 30 chr15 74439667 74439833 -26940688 - MIR SINE MIR -44 218 48 290 286 22 95 chr15 74439872 74439985 -26940536 - L1M4 LINE L1 -3043 3103 3014 2250 98 0 0 chr15 74439985 74440271 -26940250 + AluSx SINE Alu 1 286 -26 290 286 22 95 chr15 74440271 74440388 -26940133 - L1M4 LINE L1 -3132 3014 2890 416 221 0 13 chr15 74440894 74440971 -26939550 + MER33 DNA MER1_type 2 77 -247 481 111 44 11 chr15 74440971 74441061 -26939460 + MER33 DNA MER1_type 253 345 -18 704 269 29 17 chr15 74441866 74442041 -26938480 - MER91B DNA MER1_type -13 177 1 663 282 11 6 chr15 74442164 74442345 -26938176 - MIR SINE MIR -80 182 1 2372 99 0 0 chr15 74443710 74444012 -26936509 + AluSg SINE Alu 1 302 -8 195 203 29 72 chr15 74444495 74444564 -26935957 - MER5A DNA MER1_type -1 188 123 257 309 0 0 chr15 74444570 74444638 -26935883 - MIR SINE MIR -58 150 83 270 81 0 0 chr15 74445317 74445354 -26935167 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr15 74445484 74445505 -26935016 + AT_rich Low_complexity Low_complexity 1 21 0 338 217 72 0 chr15 74445623 74445706 -26934815 + MIR SINE MIR 159 247 -15 23 33 0 0 chr15 74445890 74445920 -26934601 + AT_rich Low_complexity Low_complexity 1 30 0 310 333 113 14 chr15 74446201 74446342 -26934179 + MIR3 SINE MIR 42 196 -12 1501 108 13 13 chr15 74446589 74446821 -26933700 + AluJb SINE Alu 1 232 -80 2450 58 0 3 chr15 74446821 74447112 -26933409 + AluY SINE Alu 8 299 -12 830 117 0 0 chr15 74447923 74448051 -26932470 - AluY SINE Alu -48 263 136 2244 67 7 7 chr15 74449016 74449301 -26931220 + AluY SINE Alu 18 302 -9 1671 157 8 4 chr15 74449589 74449851 -26930670 + AluJb SINE Alu 23 285 -27 1972 147 3 0 chr15 74450518 74450804 -26929717 - AluSx SINE Alu -11 301 15 857 173 0 0 chr15 74450804 74450937 -26929584 - AluJo/FLAM SINE Alu -169 133 1 2472 54 0 3 chr15 74451124 74451456 -26929065 - AluY SINE Alu 0 331 1 2048 120 41 0 chr15 74451458 74451750 -26928771 - AluSx SINE Alu -8 304 1 24 0 0 0 chr15 74451755 74451779 -26928742 + AT_rich Low_complexity Low_complexity 1 24 0 2493 62 0 10 chr15 74452464 74452772 -26927749 + AluY SINE Alu 1 305 -6 22 0 0 0 chr15 74453935 74453957 -26926564 + AT_rich Low_complexity Low_complexity 1 22 0 2068 131 0 16 chr15 74454530 74454836 -26925685 + AluSx SINE Alu 1 301 -11 2033 148 0 3 chr15 74454917 74455214 -26925307 + AluJb SINE Alu 1 296 -16 47 61 0 0 chr15 74455654 74455736 -26924785 + AT_rich Low_complexity Low_complexity 1 82 0 202 229 12 12 chr15 74455742 74455825 -26924696 + T-rich Low_complexity Low_complexity 1 83 0 32 0 0 0 chr15 74455825 74455857 -26924664 + AT_rich Low_complexity Low_complexity 1 32 0 429 246 77 28 chr15 74456232 74456411 -26924110 + MIR SINE MIR 18 204 -58 4771 163 27 61 chr15 74456539 74457687 -26922834 - L1MB7 LINE L1 -1 6183 5080 1821 148 20 13 chr15 74457687 74457990 -26922531 + AluSx SINE Alu 1 305 -7 2525 184 11 15 chr15 74458014 74458854 -26921667 - L1M3 LINE L1 -479 5701 4869 2238 113 0 10 chr15 74459482 74459784 -26920737 + AluSq SINE Alu 1 299 -14 1589 137 107 0 chr15 74460942 74461212 -26919309 + AluJb SINE Alu 7 305 -7 23 33 0 0 chr15 74461802 74461832 -26918689 + AT_rich Low_complexity Low_complexity 1 30 0 382 208 96 72 chr15 74462779 74462904 -26917617 - MIR3 SINE MIR 0 208 81 1037 213 18 9 chr15 74463235 74463456 -26917065 - MIR SINE MIR -10 252 30 330 313 86 18 chr15 74466394 74466557 -26913964 + MIR3 SINE MIR 30 203 -5 284 278 33 22 chr15 74466602 74466692 -26913829 - MIR SINE MIR -15 247 157 351 289 21 0 chr15 74466790 74466887 -26913634 - MIR SINE MIR -94 168 70 199 328 107 23 chr15 74468092 74468269 -26912252 - MIR SINE MIR -47 215 24 430 253 40 60 chr15 74468995 74469145 -26911376 + MIR SINE MIR 37 183 -79 1868 163 3 0 chr15 74470497 74470792 -26909729 + AluJb SINE Alu 1 296 -16 2377 80 7 0 chr15 74470793 74471095 -26909426 + AluSx SINE Alu 1 304 -8 204 79 0 53 chr15 74471107 74471145 -26909376 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 487 306 48 11 chr15 74471605 74471791 -26908730 + MIR SINE MIR 34 226 -36 2389 63 0 3 chr15 74472385 74472684 -26907837 + AluY SINE Alu 2 299 -12 780 219 184 36 chr15 74474520 74474798 -26905723 + MLT1I LTR MaLR 85 403 -6 325 237 65 85 chr15 74476030 74476177 -26904344 + MIR3 SINE MIR 32 179 -29 227 277 31 0 chr15 74476389 74476454 -26904067 + L2 LINE L2 3204 3270 -2 911 158 89 0 chr15 74476506 74476664 -26903857 + AluJb SINE Alu 129 300 -12 332 253 35 0 chr15 74477581 74477668 -26902853 + MIR SINE MIR 49 138 -70 205 266 125 8 chr15 74477740 74477868 -26902653 - L3 LINE CR1 0 1577 1435 471 342 61 80 chr15 74478062 74478722 -26901799 - L3 LINE CR1 -243 1334 688 337 288 36 0 chr15 74478725 74478836 -26901685 + L2 LINE L2 2246 2360 -954 479 309 15 49 chr15 74479753 74479917 -26900604 + MIR SINE MIR 4 162 -62 225 318 152 26 chr15 74480418 74480541 -26899980 - MIR SINE MIR -7 255 108 594 178 319 0 chr15 74480541 74480676 -26899845 - MER45A DNA AcHobo 0 178 1 225 318 152 26 chr15 74480676 74480703 -26899818 - MIR SINE MIR -154 108 86 2286 185 76 2 chr15 74483127 74483560 -26896961 + MLT1C LTR MaLR 3 467 0 598 362 149 16 chr15 74483800 74484510 -26896011 + L3 LINE CR1 771 1575 -2 1492 189 43 4 chr15 74484535 74484816 -26895705 + AluJo SINE Alu 1 292 -20 190 293 274 0 chr15 74484938 74485044 -26895477 - MIR3 SINE MIR -65 143 9 290 295 147 23 chr15 74485487 74485616 -26894905 + MIR SINE MIR 39 183 -79 219 208 52 78 chr15 74486373 74486450 -26894071 + MIR SINE MIR 17 91 -117 377 230 45 0 chr15 74486586 74486702 -26893819 + MIR SINE MIR 22 146 -62 572 312 192 18 chr15 74487204 74488012 -26892509 + L2 LINE L2 2203 3201 -112 761 299 84 28 chr15 74488078 74488470 -26892051 - HAL1 LINE L1 -1791 716 303 438 108 0 0 chr15 74488650 74488715 -26891806 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 357 159 0 0 chr15 74488770 74488833 -26891688 + CT-rich Low_complexity Low_complexity 4 66 0 1585 151 25 72 chr15 74488834 74489152 -26891369 - AluJo SINE Alu 0 312 10 303 315 101 0 chr15 74489170 74489259 -26891262 - HAL1 LINE L1 -2385 122 25 2774 63 3 31 chr15 74489263 74489431 -26891090 + THE1C LTR MaLR 1 172 -203 1718 139 4 0 chr15 74489431 74489690 -26890831 - AluSg SINE Alu -7 303 44 2774 63 3 31 chr15 74489690 74489902 -26890619 + THE1C LTR MaLR 172 370 -5 434 158 178 0 chr15 74489980 74490081 -26890440 + MER63A DNA MER1_type 92 210 0 196 277 21 0 chr15 74490141 74490188 -26890333 + L2 LINE L2 3224 3271 -1 376 309 71 66 chr15 74491109 74491501 -26889020 - L2 LINE L2 -446 2868 2475 273 317 99 21 chr15 74492036 74492178 -26888343 + MIR3 SINE MIR 18 170 -38 485 307 79 69 chr15 74492310 74492995 -26887526 + L1ME LINE L1 560 1298 -4963 899 274 82 46 chr15 74494432 74494640 -26885881 + MLT1J2 LTR MaLR 42 241 -209 2514 70 0 0 chr15 74494640 74494952 -26885569 + AluSx SINE Alu 1 312 0 899 274 82 46 chr15 74494952 74495133 -26885388 + MLT1J2 LTR MaLR 241 445 -5 244 314 112 18 chr15 74495172 74495341 -26885180 + MIR SINE MIR 26 210 -52 2158 75 0 27 chr15 74495380 74495701 -26884820 - AluY SINE Alu 0 313 1 228 329 139 7 chr15 74495750 74495887 -26884634 - MIR SINE MIR -73 189 35 398 300 44 11 chr15 74496797 74496977 -26883544 + MIR3 SINE MIR 16 201 -7 2367 88 0 0 chr15 74497141 74497447 -26883074 + AluSx SINE Alu 1 306 -6 2015 204 123 24 chr15 74497451 74497994 -26882527 + L1MC3 LINE L1 7189 7785 0 871 158 19 6 chr15 74498072 74498261 -26882260 - AluJo SINE Alu 0 313 123 254 282 145 15 chr15 74498549 74498680 -26881841 + MIR3 SINE MIR 14 161 -47 341 221 44 111 chr15 74498754 74498935 -26881586 - MIR SINE MIR -81 181 13 342 316 8 0 chr15 74501722 74501839 -26878682 - MIR SINE MIR -56 152 35 300 313 73 28 chr15 74502143 74502322 -26878199 + MIR3 SINE MIR 16 202 -6 2314 103 0 0 chr15 74503015 74503326 -26877195 + AluSx SINE Alu 1 311 -1 40 49 0 0 chr15 74504169 74504230 -26876291 + AT_rich Low_complexity Low_complexity 1 61 0 28 0 0 0 chr15 74504264 74504292 -26876229 + AT_rich Low_complexity Low_complexity 1 28 0 275 0 29 0 chr15 74504408 74504443 -26876078 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 415 337 88 32 chr15 74504469 74504843 -26875678 + L2 LINE L2 2337 2731 -583 474 306 157 34 chr15 74505020 74505166 -26875355 - LTR16C LTR ERVL -2 489 362 1808 112 0 15 chr15 74505166 74505463 -26875058 + AluSx SINE Alu 30 322 0 474 306 157 34 chr15 74505463 74505669 -26874852 - LTR16C LTR ERVL -129 362 90 199 341 220 0 chr15 74505796 74505969 -26874552 + L2 LINE L2 3039 3249 -23 224 189 0 0 chr15 74507199 74507236 -26873285 + (GGGTG)n Simple_repeat Simple_repeat 4 40 0 240 289 227 0 chr15 74507503 74507600 -26872921 + MIR3 SINE MIR 87 205 -3 1651 179 3 10 chr15 74508401 74508708 -26871813 - AluJo SINE Alu -7 305 1 2057 126 3 0 chr15 74509487 74509781 -26870740 + AluSq SINE Alu 1 295 -18 838 185 0 0 chr15 74509792 74509907 -26870614 + FLAM_C SINE Alu 3 118 -194 306 0 0 0 chr15 74509907 74509941 -26870580 + (CA)n Simple_repeat Simple_repeat 2 35 0 838 185 0 0 chr15 74509941 74509962 -26870559 + FLAM_C SINE Alu 117 137 -175 1807 158 51 0 chr15 74510399 74510710 -26869811 - MER7A DNA MER2_type -20 326 2 313 265 82 0 chr15 74510839 74510986 -26869535 - L1ME4a LINE L1 -1 6120 5962 1102 242 70 41 chr15 74511099 74511657 -26868864 - L1MC5 LINE L1 -73 7888 7315 531 263 0 0 chr15 74511796 74511929 -26868592 - L1ME4a LINE L1 -477 5644 5512 235 269 178 9 chr15 74511930 74512047 -26868474 - MIR SINE MIR -62 146 36 479 154 106 0 chr15 74512814 74512918 -26867603 + L1PB4 LINE L1 6041 6155 -1 338 300 54 45 chr15 74513018 74513098 -26867423 + L2 LINE L2 2179 2257 -1057 1636 166 48 17 chr15 74513098 74513387 -26867134 - AluJo SINE Alu -14 298 1 338 300 54 45 chr15 74513387 74513529 -26866992 + L2 LINE L2 2257 2403 -911 2416 241 105 4 chr15 74514253 74514556 -26865965 - L1ME2 LINE L1 -10 6154 5883 1262 153 34 30 chr15 74514556 74514791 -26865730 + MER46A DNA MER2_type 1 236 0 2416 241 105 4 chr15 74514791 74515212 -26865309 - L1ME2 LINE L1 -281 5883 5357 646 265 66 0 chr15 74515292 74515488 -26865033 - L1ME2 LINE L1 -1091 5055 4847 1360 166 48 11 chr15 74515535 74515806 -26864715 + L1MC1 LINE L1 6048 6328 -5 2270 231 73 30 chr15 74515838 74516735 -26863786 - L1ME2 LINE L1 -1288 4858 3894 2158 226 19 18 chr15 74516764 74517277 -26863244 + LTR40a LTR ERVL 6 519 0 1157 206 119 3 chr15 74517290 74517600 -26862921 - L1ME2 LINE L1 -2302 3844 3499 580 257 59 29 chr15 74517618 74517890 -26862631 + L1MDa LINE L1 1598 1877 -4663 490 217 192 10 chr15 74517921 74518124 -26862397 + L1MDa LINE L1 2731 2970 -3570 256 294 67 0 chr15 74518203 74518322 -26862199 + LTR67 LTR ERVL 431 557 0 247 283 50 20 chr15 74518407 74518506 -26862015 + L1ME LINE L1 5482 5583 -750 285 304 51 33 chr15 74518592 74518865 -26861656 + L1ME LINE L1 5579 5856 -314 28 29 0 0 chr15 74519241 74519276 -26861245 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr15 74519337 74519360 -26861161 + AT_rich Low_complexity Low_complexity 1 23 0 430 274 131 60 chr15 74519383 74519487 -26861034 + L1ME LINE L1 5318 5413 -708 2171 109 0 45 chr15 74519487 74519798 -26860723 + AluSx SINE Alu 1 297 -15 430 274 131 60 chr15 74519798 74520106 -26860415 + L1ME LINE L1 5413 5759 -362 1000 134 12 29 chr15 74520218 74520389 -26860132 + FRAM SINE Alu 4 171 -5 21 0 0 0 chr15 74520415 74520436 -26860085 + AT_rich Low_complexity Low_complexity 1 21 0 281 325 169 36 chr15 74520617 74520977 -26859544 - L2 LINE L2 -660 2654 2247 2248 89 3 3 chr15 74521032 74521334 -26859187 + AluSc SINE Alu 1 302 -7 11640 24 2 1 chr15 74522146 74524286 -26856235 - L1PA3 LINE L1 0 6155 4014 483 203 50 2 chr15 74524406 74524516 -26856005 - MIR SINE MIR -62 146 32 663 193 42 0 chr15 74524539 74524658 -26855863 - FLAM_A SINE Alu -9 124 1 362 327 107 7 chr15 74524886 74525036 -26855485 - MIR3 SINE MIR -7 201 37 2582 58 3 0 chr15 74525323 74525633 -26854888 - AluY SINE Alu 0 311 1 21 71 0 0 chr15 74525893 74525935 -26854586 + AT_rich Low_complexity Low_complexity 1 42 0 21 82 0 0 chr15 74526042 74526091 -26854430 + AT_rich Low_complexity Low_complexity 1 49 0 2192 132 0 34 chr15 74527249 74527606 -26852915 - MER7A DNA MER2_type 0 346 4 247 312 179 67 chr15 74527665 74527950 -26852571 + L2 LINE L2 2940 3256 -16 762 149 0 0 chr15 74528375 74528489 -26852032 + FLAM_C SINE Alu 3 116 -17 250 140 53 0 chr15 74528504 74528561 -26851960 + GA-rich Low_complexity Low_complexity 4 63 0 191 336 86 8 chr15 74528625 74528753 -26851768 + MIR3 SINE MIR 14 151 -57 25 0 0 0 chr15 74528833 74528858 -26851663 + AT_rich Low_complexity Low_complexity 1 25 0 584 246 140 11 chr15 74529191 74529370 -26851151 - MIR SINE MIR -28 234 33 243 255 0 21 chr15 74529872 74529966 -26850555 - L1MC4 LINE L1 -1339 6703 6612 1252 245 54 9 chr15 74530886 74531373 -26849148 + L2 LINE L2 2629 3136 -177 1641 193 0 7 chr15 74531529 74531829 -26848692 + AluSx SINE Alu 1 298 -14 595 333 202 32 chr15 74531925 74532650 -26847871 - L2 LINE L2 -342 2972 2085 538 193 182 62 chr15 74532650 74532842 -26847679 + MER58C DNA MER1_type 1 215 0 595 333 202 32 chr15 74532842 74532953 -26847568 - L2 LINE L2 -1229 2085 1994 29 0 0 0 chr15 74533025 74533054 -26847467 + AT_rich Low_complexity Low_complexity 1 29 0 430 244 81 81 chr15 74533760 74534018 -26846503 - L1ME4a LINE L1 -21 6100 5843 1639 145 4 4 chr15 74534072 74534314 -26846207 - AluJo SINE Alu -22 290 49 22 0 0 0 chr15 74534317 74534339 -26846182 + AT_rich Low_complexity Low_complexity 1 22 0 376 264 41 41 chr15 74534425 74534622 -26845899 - L1ME4a LINE L1 -298 5823 5627 2418 72 7 0 chr15 74534636 74534940 -26845581 + AluY SINE Alu 1 306 -5 392 191 24 32 chr15 74535283 74535409 -26845112 + MER75 DNA T2_type 380 504 0 241 286 79 5 chr15 74535469 74535658 -26844863 + L1ME LINE L1 4501 4703 -1443 231 185 12 25 chr15 74535852 74535933 -26844588 + L1ME LINE L1 4968 5047 -1099 611 293 90 24 chr15 74536164 74536574 -26843947 + L1ME LINE L1 5330 5766 -396 351 304 11 11 chr15 74536638 74536730 -26843791 - L2 LINE L2 0 3272 3181 210 91 0 0 chr15 74536853 74536886 -26843635 + (GA)n Simple_repeat Simple_repeat 2 34 0 385 245 0 10 chr15 74537027 74537125 -26843396 + AluJ/FLAM SINE Alu 2 98 -204 22 0 0 0 chr15 74537631 74537653 -26842868 + AT_rich Low_complexity Low_complexity 1 22 0 352 232 24 12 chr15 74538481 74538563 -26841958 - MIR3 SINE MIR -21 187 105 400 386 114 15 chr15 74538818 74539290 -26841231 - L2 LINE L2 -557 2757 2239 317 345 124 14 chr15 74539305 74539514 -26841007 - MIR SINE MIR -1 261 30 937 139 59 18 chr15 74539780 74539989 -26840532 - MLT2A2 LTR ERVL -8 445 292 444 248 117 7 chr15 74540696 74540833 -26839688 + MIR3 SINE MIR 38 189 -19 21 36 0 0 chr15 74541477 74541505 -26839016 + AT_rich Low_complexity Low_complexity 1 28 0 342 45 0 0 chr15 74541814 74541858 -26838663 + (TG)n Simple_repeat Simple_repeat 2 45 0 240 250 320 19 chr15 74542067 74542223 -26838298 - MIR3 SINE MIR -4 204 2 275 319 106 0 chr15 74542657 74542770 -26837751 - L2 LINE L2 -1 3271 3147 715 209 0 27 chr15 74542793 74542941 -26837580 - L2 LINE L2 0 3313 3170 308 335 100 0 chr15 74542953 74543173 -26837348 - L2 LINE L2 -334 2938 2699 359 308 0 92 chr15 74544653 74544783 -26835738 - L2 LINE L2 -2 3270 3153 2272 108 0 0 chr15 74545226 74545521 -26835000 + AluSg SINE Alu 1 295 -15 2347 88 3 0 chr15 74545664 74545959 -26834562 + AluSq SINE Alu 1 296 -17 481 277 18 0 chr15 74546503 74546615 -26833906 + L2 LINE L2 3154 3267 -5 27 0 0 0 chr15 74546899 74546926 -26833595 + AT_rich Low_complexity Low_complexity 1 27 0 312 267 12 12 chr15 74547496 74547582 -26832939 + MIR SINE MIR 56 141 -67 286 285 145 47 chr15 74548848 74549020 -26831501 - MIR SINE MIR -41 221 33 1322 203 53 53 chr15 74549176 74549550 -26830971 + MLT1A2 LTR MaLR 1 374 0 4830 125 66 16 chr15 74549842 74550944 -26829577 - L1PB4 LINE L1 -8 6148 5005 2194 115 0 10 chr15 74550945 74551250 -26829271 - AluSx SINE Alu -9 303 2 183 42 0 0 chr15 74551258 74551282 -26829239 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 742 182 0 0 chr15 74551299 74551420 -26829101 + FLAM_A SINE Alu 6 126 -16 4996 146 68 31 chr15 74551421 74552532 -26827989 - L1MC1 LINE L1 0 6333 5184 1883 134 18 0 chr15 74552540 74552845 -26827676 - AluSx SINE Alu 0 310 1 203 316 76 13 chr15 74552880 74552959 -26827562 - L2 LINE L2 -21 3251 3168 880 164 178 44 chr15 74553099 74553324 -26827197 - MIR SINE MIR -5 257 3 630 319 117 46 chr15 74553324 74554117 -26826404 - L2 LINE L2 -225 3047 2201 180 355 0 0 chr15 74554152 74554214 -26826307 - L2 LINE L2 -1321 1993 1932 509 311 75 65 chr15 74554279 74554694 -26825827 - L2 LINE L2 -1559 1755 1332 1774 188 3 0 chr15 74554694 74554992 -26825529 + AluJo SINE Alu 4 302 -10 509 311 75 65 chr15 74554992 74555110 -26825411 - L2 LINE L2 -1982 1332 1217 610 225 136 31 chr15 74555581 74555772 -26824749 + MIR SINE MIR 12 222 -40 2161 125 3 3 chr15 74555931 74556228 -26824293 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr15 74556433 74556454 -26824067 + AT_rich Low_complexity Low_complexity 1 21 0 229 96 39 19 chr15 74556867 74556919 -26823602 + (TTTA)n Simple_repeat Simple_repeat 3 55 0 206 296 35 71 chr15 74607654 74607823 -26772698 + L2 LINE L2 2174 2336 -978 319 319 54 8 chr15 74608931 74609049 -26771472 - MLT1L LTR MaLR -87 528 379 215 247 12 24 chr15 74609561 74609646 -26770875 + GA-rich Low_complexity Low_complexity 4 87 0 2173 117 3 0 chr15 74610429 74610742 -26769779 - AluSx SINE Alu 0 314 1 417 274 38 25 chr15 74611098 74611255 -26769266 + MER103 DNA DNA 3 161 -5 442 266 84 53 chr15 74613229 74613492 -26767029 - L2 LINE L2 -60 3253 2983 481 235 130 31 chr15 74614080 74614242 -26766279 + MER5B DNA MER1_type 1 178 0 337 270 34 0 chr15 74614261 74614350 -26766171 + MER5A DNA MER1_type 14 105 -84 267 208 0 0 chr15 74614793 74614846 -26765675 + MER58C DNA MER1_type 163 215 0 2189 96 0 84 chr15 74615045 74615377 -26765144 - AluSg SINE Alu -6 304 1 782 251 78 15 chr15 74615422 74615693 -26764828 + L2 LINE L2 1185 1472 -1842 620 49 12 0 chr15 74615695 74615776 -26764745 - AluY SINE Alu -227 83 2 870 242 204 36 chr15 74615800 74615845 -26764676 + L2 LINE L2 2164 2200 -1114 1100 145 5 59 chr15 74615845 74616066 -26764455 + MER3 DNA MER1_type 1 209 0 870 242 204 36 chr15 74616066 74616094 -26764427 + L2 LINE L2 2200 2222 -1092 2344 88 3 0 chr15 74616094 74616388 -26764133 - AluY SINE Alu -15 296 2 2274 107 3 0 chr15 74616389 74616679 -26763842 - AluSx SINE Alu -16 296 6 870 242 204 36 chr15 74616679 74616850 -26763671 + L2 LINE L2 2222 2363 -951 1506 167 21 0 chr15 74616850 74617090 -26763431 - AluJo SINE Alu -67 245 1 870 242 204 36 chr15 74617090 74617229 -26763292 + L2 LINE L2 2363 2616 -698 1255 239 169 29 chr15 74617329 74617583 -26762938 + L2 LINE L2 2584 2801 -512 2334 112 0 3 chr15 74617583 74617886 -26762635 - AluSx SINE Alu -10 302 1 1255 239 169 29 chr15 74617886 74618259 -26762262 + L2 LINE L2 2801 3311 -2 352 350 31 43 chr15 74618794 74618957 -26761564 - MIR3 SINE MIR -3 205 45 252 220 17 51 chr15 74619248 74619307 -26761214 + MIR SINE MIR 58 114 -94 4184 84 8 39 chr15 74619616 74620233 -26760288 - MER51A LTR ERV1 -36 598 1 227 165 231 22 chr15 74620233 74620324 -26760197 + L1ME2 LINE L1 6052 6161 -3 470 309 194 35 chr15 74620334 74620995 -26759526 - L2 LINE L2 -613 2701 1936 251 303 85 81 chr15 74621293 74621504 -26759017 - L2 LINE L2 -16 3256 3045 834 142 8 22 chr15 74621527 74621661 -26758860 + FLAM_C SINE Alu 2 133 0 2420 84 0 3 chr15 74621669 74621966 -26758555 + AluY SINE Alu 1 296 -15 2322 121 0 3 chr15 74621966 74622279 -26758242 + AluSx SINE Alu 1 312 0 334 132 0 44 chr15 74622972 74623040 -26757481 - AluJo SINE Alu -2 300 236 923 135 45 0 chr15 74623040 74623196 -26757325 - AluJo SINE Alu -133 179 17 318 224 35 12 chr15 74625422 74625507 -26755014 + MLT1L LTR MaLR 205 291 -324 10029 117 28 5 chr15 74625757 74627307 -26753214 - L1P3 LINE L1 -4871 1590 5 566 293 2 0 chr15 74627313 74627470 -26753051 - MIR SINE MIR -63 145 3 1642 129 187 71 chr15 74627516 74627896 -26752625 - MSTA LTR MaLR -4 424 1 309 259 50 93 chr15 74627965 74628104 -26752417 + HAL1 LINE L1 2367 2499 -8 1822 143 14 4 chr15 74629355 74629675 -26750846 - AluJb SINE Alu 0 323 1 319 277 90 60 chr15 74629946 74630112 -26750409 + MIR SINE MIR 20 190 -72 254 319 28 0 chr15 74631845 74631917 -26748604 - MIR SINE MIR -6 256 183 283 277 189 44 chr15 74632002 74632161 -26748360 + MIR SINE MIR 43 224 -38 236 358 83 9 chr15 74632229 74632338 -26748183 - L2 LINE L2 0 3313 3197 429 286 100 59 chr15 74633177 74633248 -26747273 - L2 LINE L2 -1219 2095 2028 898 115 0 43 chr15 74633248 74633387 -26747134 + FLAM_C SINE Alu 1 133 0 429 286 100 59 chr15 74633387 74633686 -26746835 - L2 LINE L2 -1286 2028 1710 285 335 137 24 chr15 74633839 74634087 -26746434 - L2 LINE L2 -1893 1421 1146 3729 171 5 57 chr15 74634260 74634493 -26746028 + L1MB3 LINE L1 5444 5687 -496 2312 102 0 10 chr15 74634493 74634797 -26745724 - AluSx SINE Alu -11 301 1 3729 171 5 57 chr15 74634797 74635342 -26745179 + L1MB3 LINE L1 5687 6182 -1 2106 142 0 10 chr15 74635366 74635668 -26744853 + AluSx SINE Alu 1 299 -13 337 241 96 66 chr15 74635810 74635855 -26744666 + MIR3 SINE MIR 30 72 -136 1988 160 3 0 chr15 74635855 74636149 -26744372 - AluJb SINE Alu -17 295 1 337 241 96 66 chr15 74636149 74636269 -26744252 + MIR3 SINE MIR 72 200 -8 815 182 136 7 chr15 74637277 74637431 -26743090 - MER45A DNA AcHobo -4 174 1 309 286 50 43 chr15 74638337 74638477 -26742044 + MIR3 SINE MIR 61 201 -7 2495 82 3 3 chr15 74638650 74638954 -26741567 - AluSq SINE Alu -9 304 1 451 241 92 52 chr15 74639933 74640107 -26740414 + MER20B DNA MER1_type 8 188 -595 224 247 22 101 chr15 74640436 74640525 -26739996 + MIR3 SINE MIR 109 190 -18 2344 90 10 3 chr15 74641060 74641359 -26739162 + AluSq SINE Alu 1 301 -12 680 282 82 51 chr15 74642047 74642505 -26738016 + MLT1H LTR MaLR 1 536 -13 378 287 62 45 chr15 74643260 74643439 -26737082 - MIR3 SINE MIR -67 141 3 692 258 134 18 chr15 74643619 74643836 -26736685 + MIR SINE MIR 21 262 0 2168 109 10 10 chr15 74643837 74644148 -26736373 - AluSp SINE Alu -2 311 1 1399 84 0 42 chr15 74644294 74644485 -26736036 - AluSg SINE Alu -122 188 6 1269 98 186 0 chr15 74644507 74644701 -26735820 - MER30 DNA MER1_type 0 230 1 1907 151 16 0 chr15 74644871 74645250 -26735271 + L1MC2 LINE L1 5194 5577 -745 2338 94 17 0 chr15 74645261 74645558 -26734963 - AluSq SINE Alu -11 302 1 226 191 48 16 chr15 74645588 74645651 -26734870 - L1MA5 LINE L1 -271 6029 5965 1629 68 0 29 chr15 74645683 74645890 -26734631 - AluSq SINE Alu -112 201 1 4110 150 21 24 chr15 74645891 74646657 -26733864 + L1MC2 LINE L1 5575 6338 -6 2458 82 7 0 chr15 74647216 74647522 -26732999 + AluSc SINE Alu 1 308 -1 213 327 119 45 chr15 74647525 74647810 -26732711 - L2 LINE L2 -348 2966 2655 2310 93 3 0 chr15 74647810 74648110 -26732411 + AluY SINE Alu 3 303 -8 213 327 119 45 chr15 74648110 74648136 -26732385 - L2 LINE L2 -659 2655 2632 238 221 125 39 chr15 74648312 74648416 -26732105 - L1ME4a LINE L1 -47 6074 5962 2010 145 7 0 chr15 74648417 74648714 -26731807 + AluJb SINE Alu 1 299 -13 240 35 0 0 chr15 74649135 74649164 -26731357 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 1052 182 189 19 chr15 74649193 74649457 -26731064 + AluSg1 SINE Alu 1 309 0 845 177 7 0 chr15 74649492 74649639 -26730882 - FRAM SINE Alu -30 146 1 691 211 139 18 chr15 74650565 74650731 -26729790 + MER5A DNA MER1_type 4 189 0 228 259 19 0 chr15 74650731 74650783 -26729738 + MIR3 SINE MIR 153 205 -3 342 324 66 7 chr15 74651273 74651409 -26729112 + MIR3 SINE MIR 2 145 -63 232 237 53 13 chr15 74651414 74651490 -26729031 - L2 LINE L2 0 3313 3235 433 239 168 30 chr15 74651555 74651722 -26728799 + MIR SINE MIR 23 212 -50 1387 193 17 3 chr15 74651799 74652094 -26728427 + MER33 DNA MER1_type 21 319 -5 957 100 38 130 chr15 74652237 74652406 -26728115 + L1MA8 LINE L1 6073 6215 -76 2022 129 0 43 chr15 74652406 74652732 -26727789 + AluJo SINE Alu 1 312 0 957 100 38 130 chr15 74652732 74652801 -26727720 + L1MA8 LINE L1 6215 6289 -2 271 271 83 10 chr15 74653358 74653454 -26727067 - L2 LINE L2 -2 3270 3168 494 245 20 34 chr15 74653462 74653609 -26726912 + MER58A DNA MER1_type 1 145 0 1498 147 22 145 chr15 74653982 74654090 -26726431 + L1MA9 LINE L1 5825 5945 -367 2237 68 14 4 chr15 74654090 74654370 -26726151 - AluSx SINE Alu -24 288 6 1498 147 22 145 chr15 74654370 74654803 -26725718 + L1MA9 LINE L1 5945 6297 -15 1902 171 3 0 chr15 74654869 74655173 -26725348 - AluJo SINE Alu -7 305 1 240 239 60 15 chr15 74655178 74655245 -26725276 + MLT1L LTR MaLR 546 615 0 183 261 22 0 chr15 74655363 74655409 -26725112 - MER5A DNA MER1_type -77 112 66 * 830 210 40 17 chr15 74655384 74655560 -26724961 + MER5A DNA MER1_type 10 189 0 381 292 71 19 chr15 74655580 74655734 -26724787 - MER5B DNA MER1_type -16 162 1 2138 229 61 74 chr15 74656486 74656909 -26723612 + L1MC5 LINE L1 6966 7393 -568 2325 106 3 3 chr15 74656909 74657220 -26723301 + AluSp SINE Alu 1 311 -2 2138 229 61 74 chr15 74657220 74657491 -26723030 + L1MC5 LINE L1 7393 7666 -295 1880 159 23 7 chr15 74657491 74657793 -26722728 + AluJo SINE Alu 1 307 -5 1959 136 11 11 chr15 74657794 74658081 -26722440 + AluSx SINE Alu 2 288 -24 2138 229 61 74 chr15 74658081 74658356 -26722165 + L1MC5 LINE L1 7665 7925 -36 21 36 0 0 chr15 74658430 74658458 -26722063 + AT_rich Low_complexity Low_complexity 1 28 0 2060 99 41 24 chr15 74658632 74658925 -26721596 + AluSq SINE Alu 1 298 -15 228 292 15 0 chr15 74659530 74659595 -26720926 + L2 LINE L2 3203 3268 -4 527 197 8 39 chr15 74659603 74659730 -26720791 - MLT1H LTR MaLR -52 497 375 235 295 0 0 chr15 74659759 74659820 -26720701 - MLT1H LTR MaLR -264 285 225 743 279 93 63 chr15 74661199 74661303 -26719218 + MLT1L LTR MaLR 9 108 -507 2198 103 7 20 chr15 74661303 74661603 -26718918 - AluSx SINE Alu -16 296 1 743 279 93 63 chr15 74661603 74661939 -26718582 + MLT1L LTR MaLR 108 462 -153 3479 173 84 40 chr15 74661939 74662111 -26718410 + L1MA9 LINE L1 4447 4610 -1536 1441 221 3 3 chr15 74662111 74662401 -26718120 + AluJo SINE Alu 5 294 -18 3479 173 84 40 chr15 74662401 74663039 -26717482 + L1MA9 LINE L1 4610 5293 -853 2822 136 10 128 chr15 74663067 74663155 -26717366 + L1MA9 LINE L1 5254 5351 -961 2318 100 0 0 chr15 74663155 74663454 -26717067 + AluSx SINE Alu 1 299 -13 2822 136 10 128 chr15 74663454 74664032 -26716489 + L1MA9 LINE L1 5351 5839 -473 739 110 0 0 chr15 74664135 74664235 -26716286 - AluSq/x SINE Alu -202 111 12 794 185 181 19 chr15 74664331 74664568 -26715953 + MLT1D LTR MaLR 207 505 0 1602 211 112 24 chr15 74665422 74665886 -26714635 - MLT1D LTR MaLR 0 505 1 1965 143 7 7 chr15 74666055 74666378 -26714143 + AluJb SINE Alu 1 312 0 1993 144 10 13 chr15 74667162 74667475 -26713046 + AluJb SINE Alu 1 312 0 195 333 61 20 chr15 74667622 74667721 -26712800 + L2 LINE L2 3169 3271 -1 2732 253 53 12 chr15 74667856 74668767 -26711754 + L2 LINE L2 1954 2901 -413 29 47 0 0 chr15 74668781 74668824 -26711697 + AT_rich Low_complexity Low_complexity 1 43 0 729 219 34 6 chr15 74668877 74669055 -26711466 + L1MB3 LINE L1 5999 6181 -2 579 233 219 16 chr15 74669492 74669857 -26710664 - L2 LINE L2 -47 3266 2828 225 250 56 14 chr15 74669891 74669963 -26710558 + MIR SINE MIR 22 96 -166 550 276 127 0 chr15 74671790 74671971 -26708550 + MIR SINE MIR 45 248 -14 2305 90 0 3 chr15 74673574 74673863 -26706658 + AluSx SINE Alu 1 288 -24 2224 100 13 13 chr15 74673937 74674246 -26706275 + AluSg SINE Alu 1 309 -1 1642 169 0 4 chr15 74674491 74674758 -26705763 - AluJo SINE Alu 0 312 47 369 329 135 41 chr15 74674991 74675405 -26705116 - L2 LINE L2 -5 3308 2856 642 71 0 0 chr15 74675520 74675605 -26704916 + AluY SINE Alu 217 301 -10 1451 158 42 49 chr15 74675662 74675839 -26704682 + MSTB LTR MaLR 1 178 -248 243 0 0 0 chr15 74675839 74675866 -26704655 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2282 89 0 0 chr15 74675869 74676150 -26704371 - AluSx SINE Alu -31 281 1 1451 158 42 49 chr15 74676150 74676253 -26704268 + MSTB LTR MaLR 180 283 -143 710 239 84 50 chr15 74676361 74676600 -26703921 + MSTB LTR MaLR 180 426 0 343 262 43 19 chr15 74677071 74677252 -26703269 - MIR SINE MIR -28 234 46 1748 170 7 17 chr15 74677788 74678088 -26702433 + AluJo SINE Alu 2 298 -14 1967 107 21 7 chr15 74678300 74678591 -26701930 + AluSg SINE Alu 15 309 -1 29471 86 14 5 chr15 74678691 74683615 -26696906 + L1PA7 LINE L1 1211 6154 0 2522 83 0 0 chr15 74683621 74683921 -26696600 + AluSg SINE Alu 1 300 -10 234 305 95 0 chr15 74683921 74684016 -26696505 + MIR SINE MIR 155 258 -4 2221 111 0 0 chr15 74684020 74684318 -26696203 - AluSx SINE Alu -14 298 1 1894 145 3 7 chr15 74684705 74685018 -26695503 - AluJb SINE Alu 0 312 1 981 176 0 0 chr15 74685156 74685321 -26695200 - FRAM SINE Alu -1 165 1 388 266 271 16 chr15 74685332 74685520 -26695001 - HAL1 LINE L1 -634 1873 1638 310 334 122 53 chr15 74685541 74685660 -26694861 + L2 LINE L2 1817 1926 -1388 2123 139 13 11 chr15 74685660 74686035 -26694486 - L1MA5 LINE L1 0 6300 5925 310 334 122 53 chr15 74686035 74686206 -26694315 + L2 LINE L2 1926 2084 -1230 2210 139 0 0 chr15 74686206 74686516 -26694005 - AluSx SINE Alu -2 310 1 310 334 122 53 chr15 74686516 74687222 -26693299 + L2 LINE L2 2084 2883 -431 1814 59 5 5 chr15 74687233 74687455 -26693066 + AluY SINE Alu 1 222 -89 2265 112 7 0 chr15 74687910 74688214 -26692307 - AluSx SINE Alu -6 306 1 22 70 0 0 chr15 74688239 74688282 -26692239 + AT_rich Low_complexity Low_complexity 1 43 0 607 323 35 45 chr15 74688282 74688685 -26691836 - L1MC4a LINE L1 -1897 5911 5513 2216 116 0 19 chr15 74688890 74689208 -26691313 - AluSx SINE Alu 0 312 1 252 86 0 0 chr15 74689265 74689300 -26691221 + (T)n Simple_repeat Simple_repeat 1 35 0 2217 111 10 0 chr15 74690116 74690414 -26690107 - AluSx SINE Alu -11 301 1 291 245 61 10 chr15 74690685 74690783 -26689738 - MER5A DNA MER1_type 0 189 87 242 224 178 37 chr15 74690687 74690794 -26689727 + MER5A DNA MER1_type 17 138 -51 * 2407 95 3 0 chr15 74691493 74691798 -26688723 + AluSp SINE Alu 1 306 -7 231 204 20 0 chr15 74692172 74692221 -26688300 + G-rich Low_complexity Low_complexity 4 53 0 881 136 0 0 chr15 74693584 74693702 -26686819 - FLAM_C SINE Alu -25 118 1 1250 140 226 0 chr15 74693736 74694001 -26686520 + L1MB5 LINE L1 5850 6174 0 241 315 11 11 chr15 74694800 74694889 -26685632 + MIR SINE MIR 60 148 -60 558 315 106 19 chr15 74695371 74695739 -26684782 + MLT1J LTR MaLR 109 508 -3 2237 115 7 3 chr15 74695941 74696245 -26684276 - AluSx SINE Alu -7 305 1 201 108 0 27 chr15 74696295 74696332 -26684189 + MIR3 SINE MIR 160 195 -13 414 279 37 15 chr15 74696812 74696948 -26683573 + MIR3 SINE MIR 16 154 -54 1566 186 32 53 chr15 74696948 74697325 -26683196 - MLT1A2 LTR MaLR 0 374 6 2253 93 36 3 chr15 74698116 74698418 -26682103 - AluSx SINE Alu 0 312 1 1253 137 4 53 chr15 74698710 74698936 -26681585 + MER20 DNA MER1_type 5 219 0 23 0 0 0 chr15 74699117 74699140 -26681381 + AT_rich Low_complexity Low_complexity 1 23 0 503 203 133 7 chr15 74700097 74700240 -26680281 - MIR SINE MIR -89 173 13 354 276 66 26 chr15 74700326 74700478 -26680043 - L2 LINE L2 -1305 2009 1852 220 176 14 54 chr15 74701949 74702023 -26678498 + T-rich Low_complexity Low_complexity 5 75 0 1201 135 35 31 chr15 74702096 74702355 -26678166 + AluYb8 SINE Alu 42 301 -17 22219 143 25 37 chr15 74702362 74705423 -26675098 - L1 LINE L1 -1305 6260 3164 1909 141 7 24 chr15 74705423 74705713 -26674808 - AluSx SINE Alu -27 285 1 22219 143 25 37 chr15 74705713 74706319 -26674202 - L1 LINE L1 -4401 3164 2552 1629 155 55 26 chr15 74706319 74706590 -26673931 - AluSx SINE Alu -33 279 1 22219 143 25 37 chr15 74706590 74709216 -26671305 - L1 LINE L1 -5013 2552 13 2158 142 14 11 chr15 74709216 74709576 -26670945 - L1 LINE L1 -1764 4382 4022 474 238 70 135 chr15 74709613 74709887 -26670634 - MIR SINE MIR -1 261 4 22 0 0 0 chr15 74709887 74709909 -26670612 + AT_rich Low_complexity Low_complexity 1 22 0 354 304 102 23 chr15 74710990 74711256 -26669265 + MLT1L LTR MaLR 235 521 -94 435 305 153 17 chr15 74712463 74712758 -26667763 + MLT1L LTR MaLR 201 535 -80 586 216 7 22 chr15 74712932 74713071 -26667450 - AluJb SINE Alu -175 137 1 203 61 30 0 chr15 74713089 74713122 -26667399 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1260 137 0 0 chr15 74714470 74714645 -26665876 - AluSg/x SINE Alu -10 302 128 1961 116 3 38 chr15 74714647 74714939 -26665582 - AluSx SINE Alu -30 282 1 11164 181 41 80 chr15 74714939 74716048 -26664473 - L1M4 LINE L1 -962 5826 4675 234 0 0 0 chr15 74716048 74716074 -26664447 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2219 104 0 3 chr15 74716081 74716368 -26664153 - AluY SINE Alu -25 286 1 11164 181 41 80 chr15 74716368 74717417 -26663104 - L1M4 LINE L1 -2119 4669 3580 2080 136 3 13 chr15 74717417 74717726 -26662795 - AluSx SINE Alu -6 306 1 11164 181 41 80 chr15 74717726 74719189 -26661332 - L1M4 LINE L1 -3208 3580 2061 2134 107 4 0 chr15 74719189 74719499 -26661022 - AluY SINE Alu 0 311 1 11164 181 41 80 chr15 74719499 74720445 -26660076 - L1M4 LINE L1 -4727 2061 1079 2016 149 0 13 chr15 74720445 74720747 -26659774 - AluSx SINE Alu -14 298 1 11164 181 41 80 chr15 74720747 74720888 -26659633 - L1M4 LINE L1 -5709 1079 934 2261 89 7 0 chr15 74720888 74721180 -26659341 - AluY SINE Alu -17 294 1 11164 181 41 80 chr15 74721180 74723152 -26657369 - L1M4 LINE L1 -5854 934 53 324 0 0 0 chr15 74723152 74723188 -26657333 + (TG)n Simple_repeat Simple_repeat 1 36 0 11164 181 41 80 chr15 74723188 74723234 -26657287 - L1M4 LINE L1 -6735 53 7 272 54 0 0 chr15 74723235 74723272 -26657249 - L1MC/D LINE L1 -918 5441 5405 387 342 25 13 chr15 74723406 74723564 -26656957 + L2 LINE L2 2596 2755 -559 373 285 66 7 chr15 74723998 74724135 -26656386 - MER106B DNA MER1_type -13 1046 902 42 20 0 0 chr15 74725342 74725391 -26655130 + AT_rich Low_complexity Low_complexity 1 49 0 207 296 71 10 chr15 74725891 74725989 -26654532 + MER5A DNA MER1_type 61 164 -25 25 0 0 0 chr15 74726681 74726706 -26653815 + AT_rich Low_complexity Low_complexity 1 25 0 2313 78 3 34 chr15 74726706 74727026 -26653495 - AluSp SINE Alu -3 310 1 2425 234 63 28 chr15 74727251 74727901 -26652620 + MER97a DNA MER1_type? 2 694 -359 2063 116 3 10 chr15 74727901 74728194 -26652327 - AluSq SINE Alu -22 291 1 2425 234 63 28 chr15 74728194 74728539 -26651982 + MER97a DNA MER1_type? 694 1025 -28 1746 99 0 0 chr15 74728539 74728790 -26651731 + AluSq SINE Alu 63 313 0 1741 188 0 10 chr15 74728801 74729099 -26651422 + AluJb SINE Alu 1 295 -17 1799 113 96 38 chr15 74729361 74729654 -26650867 + AluSx SINE Alu 1 310 -2 1017 268 36 0 chr15 74729694 74729918 -26650603 - MIR SINE MIR 0 262 31 217 245 0 0 chr15 74730111 74730164 -26650357 + MIR3 SINE MIR 155 207 -1 2353 68 0 26 chr15 74731321 74731629 -26648892 + AluY SINE Alu 1 300 -11 1728 168 0 26 chr15 74731751 74731887 -26648634 + AluJo SINE Alu 1 139 -173 2597 7 0 0 chr15 74731887 74732218 -26648303 + AluYa5 SINE Alu 1 331 0 1728 168 0 26 chr15 74732218 74732383 -26648138 + AluJo SINE Alu 139 295 -17 365 295 177 35 chr15 74732389 74732448 -26648073 + L3b LINE CR1 1161 1210 -373 2127 75 39 52 chr15 74732448 74732754 -26647767 + AluSg SINE Alu 1 302 -8 365 295 177 35 chr15 74732754 74732982 -26647539 + L3b LINE CR1 1210 1489 -94 2221 114 3 0 chr15 74734257 74734555 -26645966 - AluSx SINE Alu -13 299 1 2083 149 3 0 chr15 74734826 74735127 -26645394 - AluSx SINE Alu -10 302 1 1658 172 27 17 chr15 74735146 74735443 -26645078 - AluJo SINE Alu -12 300 1 393 138 58 0 chr15 74735575 74735662 -26644859 - L1MB3 LINE L1 -2 6181 6090 2853 190 35 12 chr15 74735672 74737235 -26643286 - L1MA4 LINE L1 -188 6001 4369 * 6471 106 31 34 chr15 74737233 74738458 -26642063 - L1MA3 LINE L1 0 6305 5098 2460 72 0 20 chr15 74738458 74738762 -26641759 - AluY SINE Alu -13 298 1 6471 106 31 34 chr15 74738762 74738881 -26641640 - L1MA3 LINE L1 -1207 5098 4980 475 216 144 9 chr15 74739238 74739349 -26641172 + L2 LINE L2 3188 3313 0 466 334 164 5 chr15 74739352 74739792 -26640729 - L1M4 LINE L1 -1254 4892 4383 1079 287 100 7 chr15 74739819 74740352 -26640169 + L2 LINE L2 2719 3313 0 402 235 0 10 chr15 74740569 74740671 -26639850 + MLT1J2 LTR MaLR 78 178 -272 198 328 97 15 chr15 74740945 74741079 -26639442 + L2 LINE L2 3165 3309 -4 238 121 0 20 chr15 74742294 74742343 -26638178 - Alu SINE Alu -175 127 85 2372 152 28 30 chr15 74742903 74743263 -26637258 + MSTB LTR MaLR 1 361 -65 1697 158 3 74 chr15 74743263 74743599 -26636922 - AluJo SINE Alu 0 312 1 2372 152 28 30 chr15 74743599 74743665 -26636856 + MSTB LTR MaLR 361 426 0 1582 261 95 42 chr15 74743926 74744779 -26635742 + L1ME LINE L1 528 1514 -5207 1758 98 87 23 chr15 74744779 74745045 -26635476 - AluSg SINE Alu -16 294 12 1582 261 95 42 chr15 74745045 74745536 -26634985 + L1ME LINE L1 1514 1977 -4744 * 1781 148 61 81 chr15 74745525 74746025 -26634496 + L1MA10 LINE L1 5701 6332 -2 1071 279 56 25 chr15 74746017 74746649 -26633872 + L1ME LINE L1 1908 2579 -3961 * 983 215 78 60 chr15 74746692 74747039 -26633482 + L1ME LINE L1 2817 3175 -3365 1333 177 104 25 chr15 74747039 74747355 -26633166 + MER58B DNA MER1_type 1 341 0 983 215 78 60 chr15 74747355 74747440 -26633081 + L1ME LINE L1 3175 3257 -3283 1712 161 33 16 chr15 74747511 74747815 -26632706 + AluJo SINE Alu 1 309 -3 1727 297 50 23 chr15 74747894 74748837 -26631684 + L1MEc LINE L1 27 994 -5402 429 202 32 8 chr15 74748838 74748962 -26631559 + L1MEc LINE L1 1028 1154 -5242 486 210 49 7 chr15 74749100 74749243 -26631278 + L1MEc LINE L1 1645 1793 -4603 2038 141 7 7 chr15 74749329 74749633 -26630888 + AluJo SINE Alu 1 304 -8 2279 101 0 3 chr15 74750000 74750296 -26630225 + AluSx SINE Alu 1 295 -17 1169 209 79 25 chr15 74750738 74751054 -26629467 - MLT1A2 LTR MaLR -3 371 39 26 30 0 0 chr15 74751774 74751807 -26628714 + AT_rich Low_complexity Low_complexity 1 33 0 1113 227 167 5 chr15 74751930 74752331 -26628190 - L1MC4a LINE L1 -1906 5836 5371 390 178 59 10 chr15 74752358 74752459 -26628062 - L1MC4a LINE L1 -2313 5429 5324 225 238 0 0 chr15 74752581 74752644 -26627877 - L1MC4a LINE L1 -896 5184 5122 21 71 0 0 chr15 74752661 74752703 -26627818 + AT_rich Low_complexity Low_complexity 1 42 0 2484 200 15 29 chr15 74752758 74753284 -26627237 + MER68 LTR ERV1 1 519 -43 1967 153 0 0 chr15 74753342 74753653 -26626868 + AluSx SINE Alu 1 311 0 3338 62 2 0 chr15 74753692 74754113 -26626408 - L1PA7 LINE L1 -5 6149 5728 1740 138 26 10 chr15 74754130 74754441 -26626080 - L1MC1 LINE L1 -23 6310 5995 21 71 0 0 chr15 74754601 74754643 -26625878 + AT_rich Low_complexity Low_complexity 1 42 0 639 281 65 33 chr15 74754666 74755175 -26625346 - L1MC4a LINE L1 -1675 4405 3881 1854 251 66 36 chr15 74755192 74755966 -26624555 - L1MC4a LINE L1 -5224 846 50 537 269 77 51 chr15 74756020 74756644 -26623877 - L1M4 LINE L1 -2165 3981 3342 262 248 206 28 chr15 74756720 74756861 -26623660 - MLT1H1 LTR MaLR -6 549 384 625 236 39 30 chr15 74757003 74757206 -26623315 - MLT1H1 LTR MaLR -6 549 345 752 268 61 4 chr15 74757221 74757449 -26623072 - MLT1H1 LTR MaLR -312 243 3 381 231 62 39 chr15 74757470 74757600 -26622921 - L1M4 LINE L1 -2919 3227 3095 386 165 36 0 chr15 74757985 74758068 -26622453 - Tigger4(Zombi) DNA MER2_type 0 2731 1 1586 172 3 21 chr15 74759199 74759536 -26620985 + L1MA4 LINE L1 4992 5322 -824 538 59 0 0 chr15 74759546 74759614 -26620907 + U4 snRNA snRNA 1 68 -77 4095 127 90 20 chr15 74759614 74760369 -26620152 + L1MA4 LINE L1 5320 6136 -164 2353 108 0 0 chr15 74760369 74760674 -26619847 + AluSx SINE Alu 1 305 -7 4095 127 90 20 chr15 74760674 74760720 -26619801 + L1MA4 LINE L1 6136 6177 -123 3308 101 30 2 chr15 74760714 74761218 -26619303 + L1P3 LINE L1 7 524 -5937 * 187 257 100 29 chr15 74761579 74761649 -26618872 - MIR SINE MIR -101 107 33 2341 131 106 126 chr15 74761801 74762510 -26618011 + LTR34 LTR ERV1 1 695 -4 633 209 72 7 chr15 74763181 74763334 -26617187 + MER31B LTR ERV1 220 382 -84 1967 100 53 37 chr15 74763578 74763714 -26616807 + AluSx SINE Alu 1 133 -179 2227 119 0 0 chr15 74763714 74764009 -26616512 + AluSg SINE Alu 1 295 -15 1967 100 53 37 chr15 74764009 74764171 -26616350 + AluSx SINE Alu 133 304 -8 1334 191 117 24 chr15 74764352 74764693 -26615828 - MLT1B LTR MaLR 0 390 18 478 249 114 30 chr15 74764748 74764985 -26615536 - L1ME4a LINE L1 -254 5867 5611 385 219 43 53 chr15 74765005 74765192 -26615329 - L1MC4 LINE L1 -14 8028 7844 3222 137 47 21 chr15 74766608 74767045 -26613476 + L1MA8 LINE L1 5656 6115 -176 1907 142 0 44 chr15 74767045 74767362 -26613159 - AluSx SINE Alu -9 303 1 3222 137 47 21 chr15 74767362 74767544 -26612977 + L1MA8 LINE L1 6115 6291 0 467 308 39 13 chr15 74767587 74767743 -26612778 + MIR SINE MIR 61 220 -42 238 220 220 79 chr15 74767930 74768107 -26612414 - MIR SINE MIR 0 262 61 1952 153 3 7 chr15 74768635 74768936 -26611585 + AluJo SINE Alu 6 305 -7 3864 123 118 10 chr15 74769020 74769470 -26611051 - Tigger3(Golem) DNA MER2_type 0 3029 2629 2126 118 14 3 chr15 74769470 74769766 -26610755 + AluSx SINE Alu 1 299 -13 3864 123 118 10 chr15 74769766 74770357 -26610164 - Tigger3(Golem) DNA MER2_type -400 2629 43 260 311 78 24 chr15 74770487 74770654 -26609867 - L2 LINE L2 -206 3066 2891 442 178 0 14 chr15 74771570 74771643 -26608878 - MER2 DNA MER2_type -1 344 273 1000 271 81 63 chr15 74771652 74771759 -26608762 - L2 LINE L2 -560 2754 2650 420 191 0 0 chr15 74771759 74771853 -26608668 + L1MA8 LINE L1 6192 6285 -6 1000 271 81 63 chr15 74771853 74772298 -26608223 - L2 LINE L2 -664 2650 2192 272 287 81 0 chr15 74773343 74773430 -26607091 + MIR SINE MIR 141 234 -28 802 224 83 18 chr15 74773773 74774001 -26606520 - MER31B LTR ERV1 -4 462 220 2184 103 3 10 chr15 74774450 74774740 -26605781 + AluSq SINE Alu 1 288 -25 886 239 46 14 chr15 74774749 74774967 -26605554 - MIR SINE MIR 0 262 38 18190 87 16 1 chr15 74776585 74779944 -26600577 + L1PA7 LINE L1 2782 6154 0 365 323 119 20 chr15 74780819 74781113 -26599408 + MER102b DNA MER1_type 19 341 0 273 342 90 18 chr15 74781119 74781150 -26599371 + MIR3 SINE MIR 14 41 -167 2016 126 13 7 chr15 74781150 74781459 -26599062 + AluSx SINE Alu 1 311 -1 273 342 90 18 chr15 74781459 74781538 -26598983 + MIR3 SINE MIR 41 132 -76 1161 170 24 147 chr15 74781764 74782105 -26598416 - AluYb8 SINE Alu -8 300 2 706 246 26 73 chr15 74782331 74782563 -26597958 - MIR SINE MIR -5 257 37 1384 242 159 29 chr15 74783126 74784282 -26596239 + L1MC4 LINE L1 6469 7709 -99 2632 24 0 0 chr15 74784598 74784893 -26595628 + AluY SINE Alu 2 296 -15 1604 153 46 0 chr15 74785964 74786246 -26594275 - AluJb SINE Alu -16 296 2 673 188 56 12 chr15 74786630 74786790 -26593731 + MER5A DNA MER1_type 21 187 -2 441 176 192 5 chr15 74786913 74787106 -26593415 - Charlie1b DNA MER1_type -1 522 294 736 144 30 23 chr15 74787172 74787304 -26593217 - FLAM_C SINE Alu 0 133 1 1075 154 98 8 chr15 74787765 74787999 -26592522 - Charlie1b DNA MER1_type -264 259 5 264 139 23 0 chr15 74788275 74788318 -26592203 + MLT1L LTR MaLR 496 539 -76 22 56 0 0 chr15 74790307 74790343 -26590178 + AT_rich Low_complexity Low_complexity 1 36 0 185 0 40 0 chr15 74790416 74790441 -26590080 + (TA)n Simple_repeat Simple_repeat 2 27 0 1914 126 3 53 chr15 74790441 74790743 -26589778 - AluSx SINE Alu -25 287 1 829 153 76 0 chr15 74791131 74791344 -26589177 + L1MA8 LINE L1 6063 6291 0 739 227 27 0 chr15 74791888 74792038 -26588483 + FAM SINE Alu 3 156 -19 2008 76 72 0 chr15 74792207 74792498 -26588023 + AluY SINE Alu 6 315 0 1148 237 132 23 chr15 74793586 74794148 -26586373 - L1MC4a LINE L1 -1871 5920 5298 2124 108 7 3 chr15 74794238 74794525 -26585996 + AluSp SINE Alu 1 288 -25 666 62 0 31 chr15 74794525 74794621 -26585900 - AluY SINE Alu -19 292 200 340 281 144 56 chr15 74795006 74795078 -26585443 - L1MC4a LINE L1 -2976 3153 3089 1633 173 28 7 chr15 74795078 74795242 -26585279 - AluSx SINE Alu -23 289 115 192 40 0 0 chr15 74795242 74795267 -26585254 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1633 173 28 7 chr15 74795267 74795385 -26585136 - AluSx SINE Alu -197 115 1 340 281 144 56 chr15 74795385 74795742 -26584779 - L1MC4a LINE L1 -3040 3089 2686 542 284 113 26 chr15 74795795 74796444 -26584077 - L1M4 LINE L1 -3194 2952 2248 462 254 85 96 chr15 74796594 74796792 -26583729 - L1MC4a LINE L1 -4974 1145 951 1580 152 30 57 chr15 74796792 74797089 -26583432 - AluJb SINE Alu -19 293 5 462 254 85 96 chr15 74797089 74797256 -26583265 - L1MC4a LINE L1 -5168 951 784 406 294 113 13 chr15 74797261 74797492 -26583029 - L1MC4a LINE L1 -5305 814 561 655 179 99 26 chr15 74798013 74798164 -26582357 + MIR SINE MIR 37 198 -64 1649 162 16 13 chr15 74801281 74801589 -26578932 + L1MB7 LINE L1 5876 6184 0 22 23 0 45 chr15 74802777 74802794 -26577727 + AT_rich Low_complexity Low_complexity 1 17 -25 1832 100 96 0 chr15 74802794 74803054 -26577467 - AluSx SINE Alu -27 285 1 22 23 0 45 chr15 74803054 74803080 -26577441 + AT_rich Low_complexity Low_complexity 17 42 0 2249 96 10 0 chr15 74803243 74803534 -26576987 + AluSx SINE Alu 1 294 -18 2168 100 17 3 chr15 74804248 74804539 -26575982 + AluSc SINE Alu 5 299 -10 27 81 0 0 chr15 74804634 74804696 -26575825 + AT_rich Low_complexity Low_complexity 1 62 0 1696 176 37 3 chr15 74804710 74805006 -26575515 + AluJb SINE Alu 1 306 -6 264 167 0 0 chr15 74805776 74805824 -26574697 + (TG)n Simple_repeat Simple_repeat 2 49 0 696 169 197 0 chr15 74805888 74806030 -26574491 + MER5A DNA MER1_type 2 171 -18 912 116 0 8 chr15 74806057 74806186 -26574335 + FLAM_C SINE Alu 1 128 -5 601 299 72 45 chr15 74807497 74807831 -26572690 - L3 LINE CR1 -181 1396 1054 575 305 69 42 chr15 74808306 74808640 -26571881 - L3 LINE CR1 -181 1396 1054 1928 107 0 67 chr15 74809686 74809984 -26570537 + AluSg1 SINE Alu 17 294 -15 2314 116 0 0 chr15 74810056 74810366 -26570155 + AluSx SINE Alu 1 310 -2 304 324 40 57 chr15 74810368 74810544 -26569977 - L1ME3A LINE L1 -11 6159 5987 1287 194 4 13 chr15 74810647 74810884 -26569637 - MER106A DNA MER1_type -1 235 1 381 265 68 0 chr15 74810895 74811012 -26569509 - L1ME3A LINE L1 -218 5952 5828 689 261 118 12 chr15 74811014 74811259 -26569262 - L1ME3A LINE L1 -373 5797 5527 1470 178 11 45 chr15 74811841 74812128 -26568393 - AluJo SINE Alu -4 308 32 1977 133 10 16 chr15 74813285 74813594 -26566927 - AluSq SINE Alu -6 307 1 2130 102 3 23 chr15 74814385 74814689 -26565832 - AluSc SINE Alu -11 298 1 269 323 60 38 chr15 74815217 74815350 -26565171 + MIR SINE MIR 124 259 -3 26 30 0 0 chr15 74815474 74815507 -26565014 + AT_rich Low_complexity Low_complexity 1 33 0 247 268 18 98 chr15 74815695 74815807 -26564714 - MIR SINE MIR -43 219 117 2071 141 3 0 chr15 74815885 74816182 -26564339 + AluSx SINE Alu 1 298 -14 1680 174 7 14 chr15 74816474 74816762 -26563759 + AluJo SINE Alu 1 286 -26 354 305 61 0 chr15 74817326 74817457 -26563064 + L1ME4a LINE L1 5558 5696 -425 226 201 208 97 chr15 74817633 74817777 -26562744 + L1ME4a LINE L1 5961 6120 -1 996 154 0 0 chr15 74817795 74817944 -26562577 + FRAM SINE Alu 28 176 0 644 135 0 29 chr15 74818215 74818319 -26562202 - AluSg/x SINE Alu -7 302 202 8430 55 0 0 chr15 74818646 74819615 -26560906 + LTR5 LTR ERVK 1 969 0 1464 161 30 44 chr15 74820095 74820393 -26560128 + AluJo SINE Alu 1 294 -18 22 0 0 0 chr15 74820501 74820523 -26559998 + AT_rich Low_complexity Low_complexity 1 22 0 1318 194 129 59 chr15 74820693 74821034 -26559487 + MLT1A1 LTR MaLR 1 365 0 180 370 14 14 chr15 74821245 74821318 -26559203 - MIR SINE MIR -133 129 57 195 42 0 0 chr15 74821468 74821492 -26559029 + (TTC)n Simple_repeat Simple_repeat 3 26 0 181 171 0 29 chr15 74822722 74822757 -26557764 - MER5B DNA MER1_type -124 54 21 223 219 24 110 chr15 74822789 74822871 -26557650 - MIR SINE MIR -61 147 73 366 309 102 38 chr15 74823456 74823692 -26556829 + HAL1 LINE L1 814 1064 -1443 1886 134 20 20 chr15 74823996 74824295 -26556226 + AluJb SINE Alu 1 299 -13 319 291 99 23 chr15 74824325 74824497 -26556024 + HAL1 LINE L1 1426 1610 -897 1032 231 84 95 chr15 74824927 74825464 -26555057 + L1ME3A LINE L1 5635 6165 -5 233 210 254 24 chr15 74825517 74825765 -26554756 + L1M4 LINE L1 2958 3262 -2884 1208 181 33 14 chr15 74825967 74826182 -26554339 - MER20 DNA MER1_type 0 219 1 2161 85 14 7 chr15 74826525 74826818 -26553703 + AluSg SINE Alu 1 295 -15 1197 117 11 16 chr15 74826843 74827031 -26553490 + AluSg/x SINE Alu 124 310 0 232 322 111 54 chr15 74827051 74827349 -26553172 + HAL1 LINE L1 23 337 -2170 1961 162 7 0 chr15 74827625 74827928 -26552593 - AluJb SINE Alu -7 305 1 263 213 108 116 chr15 74827928 74828205 -26552316 + HAL1 LINE L1 796 1070 -1437 523 235 73 150 chr15 74828272 74828740 -26551781 + MLT1H LTR MaLR 110 541 -8 1009 239 113 46 chr15 74828775 74829253 -26551268 + HAL1 LINE L1 1121 1630 -877 905 248 8 43 chr15 74829263 74829497 -26551024 - MIR SINE MIR -9 253 28 553 279 139 13 chr15 74829513 74829750 -26550771 + HAL1 LINE L1 1637 1903 -604 21 0 0 0 chr15 74829779 74829800 -26550721 + AT_rich Low_complexity Low_complexity 1 21 0 244 256 172 35 chr15 74829821 74830024 -26550497 + HAL1 LINE L1 2057 2287 -220 220 324 122 22 chr15 74832208 74832347 -26548174 - L2 LINE L2 -1021 2293 2141 214 253 40 27 chr15 74832416 74832491 -26548030 + L2 LINE L2 3148 3223 -49 242 301 36 67 chr15 74832589 74832782 -26547739 - L1MC4a LINE L1 -1883 5925 5739 253 316 175 12 chr15 74832782 74832953 -26547568 - L2 LINE L2 -1300 2014 1816 817 154 0 0 chr15 74833366 74833483 -26547038 - FLAM_C SINE Alu -26 117 1 2104 119 10 0 chr15 74833506 74833800 -26546721 - AluSx SINE Alu -15 297 1 227 302 10 0 chr15 74834085 74834181 -26546340 - L1MC4a LINE L1 -1477 4669 4573 423 239 0 0 chr15 74834181 74834290 -26546231 + (CATA)n Simple_repeat Simple_repeat 2 110 0 1780 175 3 7 chr15 74834290 74834581 -26545940 - AluJb SINE Alu -21 291 2 2246 128 0 0 chr15 74834980 74835277 -26545244 - AluSx SINE Alu -15 297 1 590 190 84 53 chr15 74835296 74835522 -26544999 + L1ME4a LINE L1 5889 6121 0 1609 246 108 31 chr15 74836330 74836879 -26543642 + MLT1E LTR MaLR 3 593 0 282 116 0 0 chr15 74836950 74836993 -26543528 + (CATA)n Simple_repeat Simple_repeat 2 44 0 2287 96 3 3 chr15 74836994 74837295 -26543226 - AluSg SINE Alu -9 301 1 3093 172 151 124 chr15 74838092 74838308 -26542213 + Charlie1a DNA MER1_type 62 271 -2490 2106 117 0 13 chr15 74838308 74838608 -26541913 + AluJb SINE Alu 1 296 -16 3093 172 151 124 chr15 74838608 74839248 -26541273 + Charlie1a DNA MER1_type 271 1073 -1688 637 159 0 9 chr15 74839248 74839355 -26541166 + FRAM SINE Alu 61 166 -10 3093 172 151 124 chr15 74839355 74839749 -26540772 + Charlie1a DNA MER1_type 1073 1455 0 518 162 213 74 chr15 74843952 74843967 -26536554 + L1MC5 LINE L1 7695 7707 -254 1917 108 70 0 chr15 74843967 74844253 -26536268 + AluSx SINE Alu 1 306 -6 518 162 213 74 chr15 74844253 74844453 -26536068 + L1MC5 LINE L1 7707 7940 -21 365 264 36 64 chr15 74844695 74844835 -26535686 - MER20 DNA MER1_type -17 202 67 189 316 158 67 chr15 74845163 74845479 -26535042 + L2 LINE L2 2910 3254 -18 207 0 0 0 chr15 74846273 74846296 -26534225 + (CCCCG)n Simple_repeat Simple_repeat 3 25 0 26 0 0 0 chr15 74846608 74846634 -26533887 + GC_rich Low_complexity Low_complexity 1 26 0 25 83 0 0 chr15 74846874 74846934 -26533587 + GC_rich Low_complexity Low_complexity 1 60 0 312 262 123 109 chr15 74847063 74847429 -26533092 + L1M2 LINE L1 771 1141 -5708 227 303 13 0 chr15 74847516 74847592 -26532929 + L2 LINE L2 2562 2638 -676 264 267 27 27 chr15 74848017 74848092 -26532429 + L2 LINE L2 3191 3265 -7 265 180 20 0 chr15 74848108 74848158 -26532363 + L2 LINE L2 3204 3254 -18 769 208 21 0 chr15 74848238 74848382 -26532139 + MER45A DNA AcHobo 1 147 -31 186 297 158 59 chr15 74849210 74849311 -26531210 - L2 LINE L2 -4 3268 3158 702 230 60 15 chr15 74849344 74849725 -26530796 - MLT1L LTR MaLR -12 603 164 2245 116 0 0 chr15 74850053 74850347 -26530174 - AluSc SINE Alu -15 294 1 1169 53 0 0 chr15 74850350 74850483 -26530038 - AluSq/x SINE Alu -179 133 1 2035 182 42 5 chr15 74850647 74851049 -26529472 - L1MC/D LINE L1 -446 5796 5380 261 146 0 18 chr15 74851049 74851104 -26529417 + MER113 DNA MER1_type? 94 147 -374 1330 201 7 29 chr15 74851106 74851379 -26529142 + AluJb SINE Alu 37 303 -9 950 117 6 43 chr15 74851388 74851550 -26528971 + MER5A DNA MER1_type 2 157 -32 245 276 52 43 chr15 74851633 74851749 -26528772 - MER91C DNA MER1_type -23 117 1 200 219 78 16 chr15 74851791 74851855 -26528666 - MIR SINE MIR -60 148 81 22 0 0 0 chr15 74852140 74852162 -26528359 + AT_rich Low_complexity Low_complexity 1 22 0 195 177 129 48 chr15 74854470 74854532 -26525989 + MIR SINE MIR 79 145 -117 885 200 7 7 chr15 74854981 74855131 -26525390 - FRAM SINE Alu -15 151 2 787 145 32 0 chr15 74856297 74856421 -26524100 + FLAM_C SINE Alu 2 129 -14 840 195 57 0 chr15 74856440 74856599 -26523922 - AluJo SINE Alu -59 253 86 352 275 121 27 chr15 74856876 74857025 -26523496 + MIR3 SINE MIR 33 195 -13 5877 82 26 0 chr15 74857398 74858179 -26522342 + L1PA13 LINE L1 5355 6155 -8 708 217 39 41 chr15 74858409 74858716 -26521805 - MLT1C LTR MaLR 0 467 109 228 100 0 0 chr15 74858718 74858758 -26521763 + Alu SINE Alu 96 135 -167 229 191 85 106 chr15 74858764 74858858 -26521663 - MLT1C LTR MaLR -413 92 1 21 36 0 0 chr15 74859154 74859182 -26521339 + AT_rich Low_complexity Low_complexity 1 28 0 319 277 36 27 chr15 74859833 74859945 -26520576 + MER103 DNA DNA 54 166 0 241 255 85 85 chr15 74860937 74861043 -26519478 + MIR SINE MIR 23 128 -80 1741 172 10 0 chr15 74861367 74861657 -26518864 + AluJo SINE Alu 3 295 -17 1217 233 126 32 chr15 74863429 74863833 -26516688 + MLT1J LTR MaLR 5 446 -65 2388 58 0 0 chr15 74865217 74865511 -26515010 - AluY SINE Alu -17 294 1 2087 100 14 0 chr15 74866005 74866296 -26514225 - AluSp SINE Alu -18 295 1 282 303 23 45 chr15 74866580 74866651 -26513870 + L1MB3 LINE L1 8 76 -6466 2340 74 0 3 chr15 74866651 74866947 -26513574 + AluY SINE Alu 1 295 -16 282 303 23 45 chr15 74866947 74867007 -26513514 + L1MB3 LINE L1 76 136 -6406 1331 252 136 26 chr15 74867279 74868121 -26512400 + L1MB3 LINE L1 488 1827 -4738 7732 217 91 12 chr15 74868198 74871337 -26509184 + L1MB3 LINE L1 3286 6676 -5 198 0 0 0 chr15 74871350 74871372 -26509149 + (A)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr15 74871385 74871407 -26509114 + AT_rich Low_complexity Low_complexity 1 22 0 1628 133 142 131 chr15 74871433 74871714 -26508807 + L1MC2 LINE L1 5842 6193 -151 279 254 16 0 chr15 74871714 74871777 -26508744 + AluYb8 SINE Alu 242 305 -3 1628 133 142 131 chr15 74871777 74871920 -26508601 + L1MC2 LINE L1 6193 6333 -11 479 258 55 0 chr15 74873613 74873741 -26506780 + MIR SINE MIR 104 238 -24 21 57 0 0 chr15 74874346 74874381 -26506140 + AT_rich Low_complexity Low_complexity 1 35 0 1403 100 61 17 chr15 74874663 74874893 -26505628 - AluSx SINE Alu -1 311 72 4870 149 33 34 chr15 74875138 74875207 -26505314 - L1MB3 LINE L1 -3 6180 6112 2905 151 81 0 chr15 74875207 74875716 -26504805 - MER44D DNA MER2_type 0 605 1 4870 149 33 34 chr15 74875716 74875757 -26504764 - L1MB3 LINE L1 -71 6112 6072 2443 57 0 13 chr15 74875757 74876072 -26504449 - AluY SINE Alu 0 311 1 4870 149 33 34 chr15 74876072 74876419 -26504102 - L1MB3 LINE L1 -111 6072 5726 4061 104 29 2 chr15 74876419 74877005 -26503516 + LTR43 LTR ERV1 1 602 0 4870 149 33 34 chr15 74877005 74877719 -26502802 - L1MB3 LINE L1 -457 5726 5013 378 0 0 0 chr15 74877719 74877761 -26502760 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 4870 149 33 34 chr15 74877761 74877773 -26502748 - L1MB3 LINE L1 -1170 5013 5002 1698 87 0 16 chr15 74877773 74878015 -26502506 - AluSg SINE Alu -72 238 1 4870 149 33 34 chr15 74878015 74878107 -26502414 - L1MB3 LINE L1 -1181 5002 4901 21 0 0 0 chr15 74878148 74878169 -26502352 + AT_rich Low_complexity Low_complexity 1 21 0 718 77 0 0 chr15 74878279 74878370 -26502151 - AluSx SINE Alu -220 92 2 1341 182 35 18 chr15 74878382 74878668 -26501853 - AluJb SINE Alu 0 312 22 1119 141 54 0 chr15 74879053 74879238 -26501283 - MER2 DNA MER2_type -150 195 1 365 294 9 0 chr15 74879568 74879677 -26500844 + L1ME3A LINE L1 6049 6158 -12 1502 153 0 15 chr15 74880323 74880584 -26499937 + AluJb SINE Alu 42 298 -14 238 354 25 13 chr15 74881246 74881325 -26499196 + MIR SINE MIR 20 99 -109 180 277 31 31 chr15 74881327 74881392 -26499129 - L2 LINE L2 -8 3305 3241 195 218 0 55 chr15 74881506 74881561 -26498960 + MIR SINE MIR 157 208 -54 1455 226 19 3 chr15 74882263 74882573 -26497948 - MER58B DNA MER1_type 0 341 27 257 226 191 52 chr15 74886885 74887000 -26493521 - MIR SINE MIR -96 166 36 1609 114 0 0 chr15 74888901 74889121 -26491400 + AluSc SINE Alu 1 220 -89 1362 195 76 0 chr15 74889757 74890034 -26490487 - AluJo SINE Alu -14 298 1 958 134 0 13 chr15 74890356 74890505 -26490016 + MSTB LTR MaLR 1 147 -279 733 118 9 9 chr15 74890505 74890641 -26489880 - AluSg/x SINE Alu 0 309 190 1221 162 131 0 chr15 74890642 74890864 -26489657 + MSTB LTR MaLR 139 389 -37 1921 123 11 0 chr15 74890864 74891148 -26489373 + AluSq SINE Alu 1 287 -26 1222 135 0 5 chr15 74891148 74891341 -26489180 + AluSg/x SINE Alu 108 299 -13 344 104 0 0 chr15 74891343 74891391 -26489130 + MSTB LTR MaLR 385 432 0 702 180 77 22 chr15 74893248 74893459 -26487062 + L1MB7 LINE L1 5771 5994 -184 21 57 0 0 chr15 74893512 74893547 -26486974 + AT_rich Low_complexity Low_complexity 1 35 0 395 280 0 16 chr15 74893862 74893987 -26486534 - L1ME LINE L1 -464 5657 5535 240 200 80 56 chr15 74894044 74894092 -26486429 - L1P5 LINE L1 -711 5443 5398 2138 109 0 26 chr15 74894092 74894405 -26486116 - AluSx SINE Alu -7 305 1 240 200 80 56 chr15 74894405 74894481 -26486040 - L1P5 LINE L1 -756 5398 5316 1535 181 7 11 chr15 74894585 74894861 -26485660 - AluJo SINE Alu -37 275 1 878 187 7 7 chr15 74895604 74895759 -26484762 - MER5A DNA MER1_type -33 156 2 1958 124 33 13 chr15 74896080 74896386 -26484135 - AluSx SINE Alu 0 312 1 26 74 0 0 chr15 74896726 74896780 -26483741 + AT_rich Low_complexity Low_complexity 1 54 0 377 309 66 11 chr15 74898985 74899166 -26481355 + MIR SINE MIR 2 192 -70 385 196 130 29 chr15 74899350 74899492 -26481029 + MIR3 SINE MIR 9 160 -64 2226 114 0 0 chr15 74900255 74900561 -26479960 - AluSx SINE Alu -6 306 1 333 289 141 7 chr15 74901220 74901369 -26479152 + MIR3 SINE MIR 31 199 -9 322 278 87 9 chr15 74901375 74901490 -26479031 + L2 LINE L2 3185 3308 -5 230 222 0 28 chr15 74902825 74902880 -26477641 + L1MC4a LINE L1 5885 5939 -1869 249 33 0 0 chr15 74902880 74902910 -26477611 + (TG)n Simple_repeat Simple_repeat 2 31 0 230 222 0 28 chr15 74902910 74902926 -26477595 + L1MC4a LINE L1 5939 5954 -1854 525 182 123 62 chr15 74903091 74903275 -26477246 + MIR SINE MIR 16 205 -57 196 250 231 0 chr15 74903880 74903932 -26476589 + MIR SINE MIR 88 151 -111 208 380 0 0 chr15 74904609 74904746 -26475775 + GA-rich Low_complexity Low_complexity 3 139 0 210 256 0 0 chr15 74904855 74904898 -26475623 + MIR SINE MIR 108 150 -58 1522 164 69 0 chr15 74905440 74905722 -26474799 + AluSx SINE Alu 2 301 0 357 274 158 21 chr15 74905723 74905913 -26474608 + MIR SINE MIR 41 256 -6 988 159 6 0 chr15 74906641 74906798 -26473723 + 7SLRNA srpRNA srpRNA 92 249 -71 257 225 9 63 chr15 74913369 74913475 -26467046 - MIR3 SINE MIR -38 170 69 1682 133 13 37 chr15 74913514 74913814 -26466707 - AluJo SINE Alu -19 293 1 4650 195 26 26 chr15 74914630 74915043 -26465478 - L1 LINE L1 -2369 5196 4784 2025 111 18 7 chr15 74915043 74915364 -26465157 - AluSg SINE Alu 0 324 1 4650 195 26 26 chr15 74915364 74916055 -26464466 - L1 LINE L1 -2780 4785 4091 463 197 68 17 chr15 74916115 74916232 -26464289 + MER63 DNA MER1_type 1 749 -313 11554 158 19 42 chr15 74916235 74918289 -26462232 - L1 LINE L1 -5535 2030 23 517 242 67 0 chr15 74918290 74918410 -26462111 - MLT1A2 LTR MaLR -246 128 1 1361 230 81 69 chr15 74919194 74919702 -26460819 - MER77 LTR ERV1 -38 567 54 185 287 0 7 chr15 74919944 74920087 -26460434 + (TG)n Simple_repeat Simple_repeat 2 143 0 1882 128 59 7 chr15 74920121 74920394 -26460127 + AluSx SINE Alu 1 287 -25 394 247 0 0 chr15 74920404 74920494 -26460027 + FLAM_A SINE Alu 6 83 -50 686 271 109 18 chr15 74921174 74921395 -26459126 + MIR SINE MIR 1 241 -21 1434 232 26 0 chr15 74921734 74922074 -26458447 + L1ME3 LINE L1 5794 6142 -20 1264 161 41 140 chr15 74922079 74922494 -26458027 - MLT1A2 LTR MaLR 0 374 1 720 182 23 8 chr15 74923426 74923558 -26456963 - MER94 DNA DNA 0 134 1 454 236 9 0 chr15 74925013 74925123 -26455398 + MIR3 SINE MIR 50 160 -48 2172 125 0 16 chr15 74925137 74925450 -26455071 - AluSx SINE Alu -4 308 1 763 146 42 0 chr15 74925506 74925642 -26454879 - L1MA9 LINE L1 0 6312 6152 180 0 0 0 chr15 74925642 74925662 -26454859 + (TTA)n Simple_repeat Simple_repeat 2 21 0 763 146 42 0 chr15 74925662 74925694 -26454827 - L1MA9 LINE L1 -160 6152 6123 1950 99 60 11 chr15 74925784 74926066 -26454455 + AluSx SINE Alu 1 296 -16 1346 170 154 4 chr15 74926072 74926331 -26454190 + AluJb SINE Alu 1 298 -14 1629 110 12 0 chr15 74926331 74926585 -26453936 + L1MA5 LINE L1 6042 6298 -2 527 145 57 2 chr15 74926597 74926702 -26453819 - L1MA7 LINE L1 -152 6148 6041 3126 244 56 46 chr15 74926782 74927237 -26453284 - HAL1 LINE L1 -36 2471 2022 2193 125 0 3 chr15 74927237 74927532 -26452989 - AluSg SINE Alu -16 294 1 3126 244 56 46 chr15 74927532 74928232 -26452289 - HAL1 LINE L1 -485 2022 1304 338 0 24 0 chr15 74928638 74928680 -26451841 + (TG)n Simple_repeat Simple_repeat 2 44 0 1535 199 38 58 chr15 74928770 74929166 -26451355 + MLT1B LTR MaLR 3 390 0 366 271 68 75 chr15 74929308 74929600 -26450921 + MLT1K LTR MaLR 293 582 -6 782 90 90 0 chr15 74930462 74930584 -26449937 - MER85 DNA T2_type -1 138 6 1869 179 13 0 chr15 74930910 74931306 -26449215 + AluJb SINE Alu 1 400 0 770 179 22 45 chr15 74931483 74931662 -26448859 - MER5B DNA MER1_type -3 175 1 456 303 221 12 chr15 74932368 74932889 -26447632 + L2 LINE L2 2643 3285 -28 519 248 0 0 chr15 74933438 74933563 -26446958 - MER53 DNA DNA -64 125 1 224 368 53 0 chr15 74933618 74933713 -26446808 - L2 LINE L2 -48 3224 3125 292 249 42 126 chr15 74933799 74933842 -26446679 + L1ME LINE L1 4797 4842 -1304 2252 127 0 0 chr15 74933842 74934142 -26446379 - AluSg SINE Alu -10 300 1 292 249 42 126 chr15 74934142 74934431 -26446090 + L1ME LINE L1 4842 5101 -1045 403 294 17 17 chr15 74934624 74934801 -26445720 + L1ME LINE L1 5257 5433 -731 2767 135 12 2 chr15 74934814 74935236 -26445285 - MSTA LTR MaLR 0 428 3 394 261 155 0 chr15 74935238 74935380 -26445141 + L1ME LINE L1 5499 5662 -459 2458 124 65 0 chr15 74935661 74936063 -26444458 - MSTA LTR MaLR 0 428 1 253 308 133 0 chr15 74936438 74936581 -26443940 + MIR SINE MIR 47 208 -54 229 286 38 19 chr15 74936850 74936955 -26443566 + MIR3 SINE MIR 84 190 -18 369 214 137 115 chr15 74937766 74937886 -26442635 + MIR3 SINE MIR 20 147 -61 579 220 96 11 chr15 74937886 74938063 -26442458 + MER117 DNA MER1_type 2 193 -4 369 214 137 115 chr15 74938063 74938124 -26442397 + MIR3 SINE MIR 147 205 -3 22 0 0 0 chr15 74938210 74938232 -26442289 + AT_rich Low_complexity Low_complexity 1 22 0 1690 116 86 192 chr15 74938847 74939434 -26441087 - L1MB3 LINE L1 0 6183 5655 1848 174 10 6 chr15 74939493 74939804 -26440717 - AluJo SINE Alu 0 312 1 339 279 43 43 chr15 74939820 74939960 -26440561 - L1ME3A LINE L1 -223 5947 5808 657 269 140 15 chr15 74939962 74940226 -26440295 + L1ME LINE L1 5484 5780 -382 2727 196 65 36 chr15 74940265 74940501 -26440020 - L1 LINE L1 -2049 4097 3869 2399 109 0 0 chr15 74940501 74940812 -26439709 - AluSx SINE Alu -1 311 1 2727 196 65 36 chr15 74940812 74941450 -26439071 - L1 LINE L1 -2277 3869 3115 645 217 82 16 chr15 74941774 74941958 -26438563 + MER117 DNA MER1_type 2 197 0 1369 164 16 25 chr15 74942130 74942374 -26438147 - AluJo SINE Alu -27 285 44 322 255 52 130 chr15 74942374 74942566 -26437955 - MIR SINE MIR -64 198 22 430 144 33 0 chr15 74943830 74943920 -26436601 + GA-rich Low_complexity Low_complexity 3 95 0 371 259 111 9 chr15 74943923 74944031 -26436490 - MIR SINE MIR -133 129 11 375 23 0 0 chr15 74944337 74944381 -26436140 + (CA)n Simple_repeat Simple_repeat 2 45 0 915 271 4 20 chr15 74944964 74945215 -26435306 + MIR SINE MIR 16 262 0 706 232 63 38 chr15 74945771 74946008 -26434513 + LTR33 LTR ERVL 21 263 -258 252 293 72 33 chr15 74946016 74946197 -26434324 - MER5C DNA MER1_type -8 316 129 2284 92 7 3 chr15 74946674 74946967 -26433554 + AluSx SINE Alu 1 294 -18 1563 134 119 29 chr15 74947685 74947962 -26432559 - AluJo SINE Alu -10 302 1 397 282 0 53 chr15 74948106 74948237 -26432284 - MER5C DNA MER1_type -200 124 1 310 278 28 0 chr15 74948263 74948335 -26432186 + LTR33 LTR ERVL 313 386 -135 398 314 57 8 chr15 74948653 74948777 -26431744 - MER91A DNA MER1_type 0 196 67 2157 139 3 0 chr15 74949657 74949966 -26430555 - AluSq SINE Alu -3 310 1 237 363 106 6 chr15 74950210 74950370 -26430151 - MIR3 SINE MIR -30 178 3 632 256 66 63 chr15 74950397 74950761 -26429760 - L2 LINE L2 0 3313 2949 263 111 0 0 chr15 74950772 74950808 -26429713 - MADE1 DNA Mariner -44 36 1 970 295 79 43 chr15 74950909 74951015 -26429506 - L2 LINE L2 -498 2816 2715 2118 141 3 0 chr15 74951015 74951321 -26429200 - AluSq SINE Alu -6 307 1 970 295 79 43 chr15 74951321 74951769 -26428752 - L2 LINE L2 -599 2715 2233 2273 112 3 0 chr15 74951769 74952073 -26428448 + AluSq SINE Alu 1 305 -8 970 295 79 43 chr15 74952073 74952164 -26428357 - L2 LINE L2 -1081 2233 2147 248 241 0 0 chr15 74952246 74952304 -26428217 + LTR50 LTR ERVL 1 58 -737 423 224 149 22 chr15 74952335 74952469 -26428052 + LTR50 LTR ERVL 138 288 -507 468 255 25 56 chr15 74952626 74952721 -26427800 - LTR67 LTR ERVL -397 160 70 3369 173 39 16 chr15 74952721 74953367 -26427154 + MER67B LTR ERV1 1 661 0 468 255 25 56 chr15 74953367 74953432 -26427089 - LTR67 LTR ERVL -487 70 5 483 319 95 33 chr15 74953714 74953987 -26426534 - MLT1J LTR MaLR -176 335 46 1112 256 125 3 chr15 74954101 74954413 -26426108 + LTR16C LTR ERVL 141 490 -1 2379 78 16 13 chr15 74954552 74954861 -26425660 + AluSx SINE Alu 1 310 -2 408 178 20 70 chr15 74955937 74956074 -26424447 - L1ME4a LINE L1 -13 6071 1210 2379 93 0 0 chr15 74956191 74956492 -26424029 + AluSc SINE Alu 1 301 -8 328 112 29 176 chr15 74956528 74956595 -26423926 - L1MC5 LINE L1 -228 7733 7704 1686 184 45 0 chr15 74956595 74956883 -26423638 + AluJb SINE Alu 3 303 -9 328 112 29 176 chr15 74956883 74956985 -26423536 - L1MC5 LINE L1 -257 7704 7589 27 62 0 0 chr15 74957533 74957581 -26422940 + AT_rich Low_complexity Low_complexity 1 48 0 274 348 2 11 chr15 74957581 74957688 -26422833 + MIR SINE MIR 19 126 -82 211 271 0 0 chr15 74957736 74957784 -26422737 + L2 LINE L2 3266 3313 0 241 229 57 43 chr15 74957891 74957961 -26422560 - L2 LINE L2 -1 3312 3242 1055 119 16 164 chr15 74958064 74958308 -26422213 - MER3 DNA MER1_type -1 208 1 328 331 78 90 chr15 74958772 74959040 -26421481 - L2 LINE L2 -4 3268 3004 2551 92 5 19 chr15 74959096 74959466 -26421055 - L1PA14 LINE L1 0 6161 5797 526 208 60 98 chr15 74959950 74960133 -26420388 - MER69A DNA AcHobo -1 176 1 211 346 143 25 chr15 74960158 74960438 -26420083 + L2 LINE L2 1699 2011 -1303 1805 148 3 21 chr15 74961062 74961353 -26419168 + AluJo SINE Alu 7 292 -20 391 214 29 19 chr15 74961353 74961456 -26419065 - L1MB8 LINE L1 -57 6121 6018 1345 147 84 8 chr15 74961462 74961700 -26418821 + AluSx SINE Alu 45 300 -12 2962 195 164 16 chr15 74961702 74962585 -26417936 - L1M4 LINE L1 -817 5329 4316 337 157 52 0 chr15 74963072 74963164 -26417357 - L1MB8 LINE L1 -817 5329 5250 2341 89 0 3 chr15 74963446 74963748 -26416773 - AluSx SINE Alu 0 312 12 474 214 97 14 chr15 74963757 74963902 -26416619 - L1MEc LINE L1 -3978 2418 2262 1588 259 23 9 chr15 74963904 74964341 -26416180 - L1MEc LINE L1 -4327 2069 1627 2453 152 24 26 chr15 74964358 74964858 -26415663 - L1MB8 LINE L1 -1 6177 5679 780 165 16 0 chr15 74964882 74965009 -26415512 - FLAM_A SINE Alu -3 130 2 2909 190 36 32 chr15 74965009 74965789 -26414732 - L1MB8 LINE L1 -742 5442 4671 * 3597 236 119 39 chr15 74965782 74966014 -26414507 - L1MEc LINE L1 -4752 1644 1432 1653 160 23 0 chr15 74966014 74966276 -26414245 - AluJb SINE Alu -44 268 1 3597 236 119 39 chr15 74966276 74966717 -26413804 - L1MEc LINE L1 -4964 1432 1028 2084 112 20 3 chr15 74966717 74967013 -26413508 - AluSx SINE Alu -11 301 1 3597 236 119 39 chr15 74967013 74967820 -26412701 - L1MEc LINE L1 -5368 1028 44 329 303 107 6 chr15 74969160 74969338 -26411183 - L1MEd LINE L1 -4176 2134 1939 1077 301 71 34 chr15 74969573 74970289 -26410232 - L1MEd LINE L1 -4701 1609 813 2571 62 0 0 chr15 74970289 74970598 -26409923 - AluY SINE Alu -2 309 1 1077 301 71 34 chr15 74970598 74970913 -26409608 - L1MEd LINE L1 -5497 813 511 1526 169 57 36 chr15 74971260 74971561 -26408960 - AluJo SINE Alu -5 307 1 33 66 0 0 chr15 74971738 74971799 -26408722 + AT_rich Low_complexity Low_complexity 1 61 0 1314 185 70 26 chr15 74971800 74972070 -26408451 - AluJo SINE Alu -30 282 1 892 309 21 25 chr15 74972071 74972398 -26408123 + MLT1I LTR MaLR 81 406 -3 585 234 176 41 chr15 74972637 74973103 -26407418 - MLT1G1 LTR MaLR 0 595 1 343 325 40 32 chr15 74973609 74973735 -26406786 + L2 LINE L2 3119 3245 -27 278 303 83 36 chr15 74974590 74974843 -26405678 - L1P LINE L1 -1162 4984 4722 1782 163 14 14 chr15 74975649 74975785 -26404736 + AluJo SINE Alu 1 136 -176 2465 73 0 3 chr15 74975785 74976085 -26404436 + AluSc SINE Alu 1 299 -10 1782 163 14 14 chr15 74976085 74976236 -26404285 + AluJo SINE Alu 135 288 -24 22 56 0 0 chr15 74976236 74976272 -26404249 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr15 74976284 74976310 -26404211 + AT_rich Low_complexity Low_complexity 1 26 0 195 100 0 0 chr15 74976430 74976460 -26404061 + (CA)n Simple_repeat Simple_repeat 2 31 0 1860 134 20 7 chr15 74976931 74977229 -26403292 + AluJb SINE Alu 1 302 -10 2294 82 3 3 chr15 74977231 74977534 -26402987 + AluY SINE Alu 1 303 -8 286 293 130 28 chr15 74978570 74978752 -26401769 + MIR SINE MIR 19 221 -41 2345 87 3 0 chr15 74979122 74979422 -26401099 + AluSg1 SINE Alu 1 301 -8 2292 115 0 0 chr15 74979742 74980047 -26400474 - AluSq SINE Alu -8 305 1 2301 100 3 0 chr15 74980591 74980892 -26399629 + AluSx SINE Alu 1 302 -10 620 207 0 44 chr15 74980899 74981034 -26399487 + FLAM_A SINE Alu 1 129 -4 25 51 0 0 chr15 74981205 74981244 -26399277 + AT_rich Low_complexity Low_complexity 1 39 0 965 174 136 42 chr15 74983257 74983521 -26397000 + LTR37A LTR ERV1 50 338 -88 501 240 44 78 chr15 74983714 74983985 -26396536 + MER31-int LTR ERV1 1025 1286 -3650 31598 101 17 22 chr15 74984087 74989646 -26390875 - L1P3 LINE L1 -434 6035 415 357 160 186 115 chr15 74989889 74990045 -26390476 + MLT1A1 LTR MaLR 30 196 -169 801 207 39 39 chr15 74990059 74990262 -26390259 + MLT1A1 LTR MaLR 161 363 -2 994 187 60 0 chr15 74990333 74990499 -26390022 + AluJo SINE Alu 6 181 -131 2027 104 0 0 chr15 74990499 74990758 -26389763 - AluSq SINE Alu -54 259 1 1109 270 91 54 chr15 74990954 74991514 -26389007 + L1MC4a LINE L1 5329 5909 -1899 1726 162 6 38 chr15 74991563 74991877 -26388644 - AluJo SINE Alu -8 304 1 1119 146 77 32 chr15 74991879 74992157 -26388364 - MER33 DNA MER1_type -47 277 1 220 289 0 0 chr15 74992166 74992218 -26388303 - L2 LINE L2 -5 3308 3257 350 298 39 0 chr15 74992630 74992734 -26387787 + L1MEc LINE L1 2171 2278 -4118 2345 260 62 25 chr15 74992751 74993935 -26386586 + L1MEc LINE L1 1929 3100 -3115 5289 149 156 21 chr15 74993939 74994898 -26385623 + L1M4 LINE L1 1144 2297 -4087 2290 94 7 0 chr15 74994898 74995197 -26385324 + AluSp SINE Alu 1 301 -12 5289 149 156 21 chr15 74995197 74995433 -26385088 + L1M4 LINE L1 2297 2500 -3884 2244 104 13 70 chr15 74995435 74995671 -26384850 - Tigger2 DNA MER2_type 0 2718 2470 1748 139 23 55 chr15 74995671 74995981 -26384540 + AluJo SINE Alu 1 300 -12 2046 129 33 7 chr15 74995982 74996284 -26384237 + AluSx SINE Alu 1 310 -2 2244 104 13 70 chr15 74996284 74996419 -26384102 - Tigger2 DNA MER2_type -247 2471 2366 26 30 0 0 chr15 74996981 74997014 -26383507 + AT_rich Low_complexity Low_complexity 1 33 0 324 234 139 22 chr15 74997591 74997728 -26382793 + L1M4 LINE L1 3121 3273 -3109 913 179 62 5 chr15 74997746 74997941 -26382580 + L1M4 LINE L1 4934 5139 -1243 2509 73 0 0 chr15 74998007 74998308 -26382213 - AluY SINE Alu -10 301 1 190 233 133 0 chr15 74998448 74998508 -26382013 + MIR SINE MIR 73 140 -122 481 229 12 39 chr15 74998591 74998732 -26381789 + L1ME1 LINE L1 6016 6161 -5 384 324 28 28 chr15 74998800 74998982 -26381539 - L3b LINE CR1 -250 1333 1152 244 320 16 24 chr15 75000544 75000669 -26379852 + CT-rich Low_complexity Low_complexity 4 127 0 25 31 0 0 chr15 75000946 75000978 -26379543 + AT_rich Low_complexity Low_complexity 1 32 0 655 82 0 73 chr15 75002334 75002444 -26378077 + L1PA10 LINE L1 6065 6166 -2 22 35 0 0 chr15 75003315 75003344 -26377177 + AT_rich Low_complexity Low_complexity 1 29 0 917 56 0 0 chr15 75003812 75003919 -26376602 + AluY SINE Alu 188 294 -17 30769 95 12 13 chr15 75003933 75010381 -26370140 - L1PA7 LINE L1 -5 6464 1 3351 121 141 0 chr15 75010441 75011078 -26369443 + Tigger1 DNA MER2_type 1 727 -1691 1365 83 65 0 chr15 75011078 75011294 -26369227 + MER30 DNA MER1_type 1 230 0 * 3442 101 32 0 chr15 75011294 75011838 -26368683 + Tigger1 DNA MER2_type 720 1281 -1137 1608 124 19 4 chr15 75011834 75012101 -26368420 + Tigger1 DNA MER2_type 2147 2417 -1 * 2184 148 18 0 chr15 75012416 75012747 -26367774 - MER1B DNA MER1_type 0 337 1 243 0 0 0 chr15 75012998 75013025 -26367496 + (CA)n Simple_repeat Simple_repeat 2 28 0 448 359 31 44 chr15 75013097 75013481 -26367040 - L2 LINE L2 -340 2974 2596 1000 226 53 0 chr15 75014025 75014233 -26366288 - MER20 DNA MER1_type 0 219 1 2219 114 64 17 chr15 75014367 75014725 -26365796 - THE1C LTR MaLR 0 375 1 758 127 16 24 chr15 75014760 75014886 -26365635 - AluSg/x SINE Alu -4 308 184 1557 127 0 0 chr15 75015134 75015354 -26365167 + AluSc SINE Alu 1 220 -89 928 224 33 0 chr15 75015990 75016204 -26364317 - AluJo SINE Alu -14 298 78 1243 143 0 63 chr15 75016312 75016535 -26363986 + AluY SINE Alu 83 291 -20 180 152 0 0 chr15 75016635 75016668 -26363853 + T-rich Low_complexity Low_complexity 1 33 0 1158 343 96 53 chr15 75017428 75018264 -26362257 - L1MC5 LINE L1 -182 7779 6981 2102 194 6 6 chr15 75018264 75018629 -26361892 + MLT1A1 LTR MaLR 1 365 0 1158 343 96 53 chr15 75018629 75018831 -26361690 - L1MC5 LINE L1 -980 6981 4389 898 123 8 0 chr15 75018833 75018963 -26361558 - AluSq/x SINE Alu -182 131 1 2319 86 0 6 chr15 75018983 75019296 -26361225 - AluY SINE Alu 0 311 1 2122 117 3 0 chr15 75019298 75019589 -26360932 - AluSx SINE Alu -16 296 5 689 306 101 87 chr15 75019630 75020297 -26360224 - L1MC5 LINE L1 -37 7924 3963 538 257 32 70 chr15 75020307 75020339 -26360182 - MIR SINE MIR -71 191 159 2777 82 6 3 chr15 75020339 75020693 -26359828 - THE1A LTR MaLR 0 355 1 11906 92 13 3 chr15 75020693 75022256 -26358265 - THE1A-int LTR MaLR 0 1580 2 2510 77 53 3 chr15 75022257 75022595 -26357926 - THE1A LTR MaLR 0 355 1 538 257 32 70 chr15 75022595 75022746 -26357775 - MIR SINE MIR -101 161 12 2462 61 0 0 chr15 75022812 75023108 -26357413 - AluY SINE Alu -15 296 1 1588 159 3 24 chr15 75024349 75024639 -26355882 + AluJo SINE Alu 12 295 -17 296 257 24 19 chr15 75024674 75024779 -26355742 + MIR3 SINE MIR 65 170 -38 248 77 26 0 chr15 75026391 75026430 -26354091 + (CCCCCG)n Simple_repeat Simple_repeat 3 42 0 291 262 187 19 chr15 75026768 75026929 -26353592 + MIR3 SINE MIR 4 192 -64 472 262 101 20 chr15 75027790 75027939 -26352582 + MIR3 SINE MIR 3 163 -45 203 281 0 16 chr15 75028096 75028160 -26352361 + (TATATG)n Simple_repeat Simple_repeat 4 66 0 4375 181 46 42 chr15 75028520 75029470 -26351051 - LTR13 LTR ERVK 0 954 1 219 246 0 0 chr15 75030212 75030269 -26350252 + (CA)n Simple_repeat Simple_repeat 2 58 0 303 282 19 19 chr15 75030269 75030372 -26350149 - MIR SINE MIR -65 143 41 524 245 88 42 chr15 75030452 75030644 -26349877 + MIR SINE MIR 31 231 -31 225 223 182 58 chr15 75030944 75031065 -26349456 + MIR3 SINE MIR 56 191 -17 289 236 65 0 chr15 75031243 75031367 -26349154 - MIR SINE MIR -48 214 82 283 330 10 0 chr15 75031403 75031500 -26349021 + MIR SINE MIR 28 125 -137 229 296 74 0 chr15 75031531 75031612 -26348909 + L2 LINE L2 3137 3223 -49 234 62 0 0 chr15 75032195 75032227 -26348294 + (GA)n Simple_repeat Simple_repeat 2 33 0 384 145 29 0 chr15 75033313 75033382 -26347139 + L2 LINE L2 3202 3272 0 474 145 12 6 chr15 75034048 75034290 -26346231 + AluJo SINE Alu 1 291 -21 1907 161 0 10 chr15 75034828 75035139 -26345382 - AluJb SINE Alu -4 308 1 212 213 0 33 chr15 75035286 75035347 -26345174 + CT-rich Low_complexity Low_complexity 3 61 0 373 311 40 7 chr15 75036113 75036264 -26344257 - MIR3 SINE MIR -24 184 29 216 299 81 0 chr15 75036306 75036393 -26344128 + L2 LINE L2 3149 3242 -30 2173 88 0 0 chr15 75037196 75037470 -26343051 + AluSg SINE Alu 1 274 -36 194 0 39 0 chr15 75037474 75037500 -26343021 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 180 216 0 0 chr15 75038175 75038212 -26342309 + MIR SINE MIR 118 154 -108 409 312 81 6 chr15 75039219 75039392 -26341129 - MIR SINE MIR -2 260 75 297 339 0 17 chr15 75040985 75041103 -26339418 - MIR SINE MIR -58 150 35 1581 208 107 40 chr15 75043051 75043173 -26337348 + L1MC4 LINE L1 7294 7406 -636 2000 130 0 37 chr15 75043173 75043495 -26337026 - AluSx SINE Alu -2 310 1 1581 208 107 40 chr15 75043495 75043877 -26336644 + L1MC4 LINE L1 7406 7832 -210 1231 166 36 32 chr15 75043878 75044125 -26336396 + AluJo SINE Alu 63 310 -2 735 167 88 10 chr15 75044127 75044205 -26336316 + L1MC4 LINE L1 7834 7904 -138 1998 128 6 41 chr15 75044205 75044339 -26336182 + AluSc SINE Alu 1 138 -171 2342 56 0 46 chr15 75044339 75044663 -26335858 + AluY SINE Alu 1 309 -2 1998 128 6 41 chr15 75044663 75044847 -26335674 + AluSc SINE Alu 138 308 -1 735 167 88 10 chr15 75044847 75044960 -26335561 + L1MC4 LINE L1 7904 8040 -2 696 320 72 31 chr15 75044975 75045363 -26335158 + L2 LINE L2 2116 2519 -795 408 200 70 52 chr15 75045369 75045484 -26335037 + L2 LINE L2 3197 3313 0 224 221 23 105 chr15 75045568 75045596 -26334925 + MER91A DNA MER1_type 3 32 -164 2451 231 40 19 chr15 75045596 75045765 -26334756 - MLT1F LTR MaLR -2 540 376 2273 115 0 0 chr15 75045765 75046070 -26334451 + AluSx SINE Alu 1 305 -7 2451 231 40 19 chr15 75046070 75046428 -26334093 - MLT1F LTR MaLR -166 376 2 224 221 23 105 chr15 75046428 75046485 -26334036 + MER91A DNA MER1_type 32 81 -115 362 224 88 40 chr15 75046727 75046852 -26333669 - MIR3 SINE MIR -65 143 13 189 249 12 77 chr15 75048617 75048738 -26331783 + MIR SINE MIR 81 139 -69 2500 63 0 0 chr15 75049281 75049584 -26330937 + AluSg SINE Alu 1 303 -7 718 244 163 10 chr15 75049884 75050093 -26330428 - MIR SINE MIR -10 252 12 326 295 0 29 chr15 75050121 75050226 -26330295 + MIR SINE MIR 43 144 -118 221 307 34 73 chr15 75050566 75050747 -26329774 + MIR SINE MIR 17 149 -59 287 273 18 64 chr15 75053583 75053693 -26326828 - MIR3 SINE MIR -20 188 84 307 227 15 0 chr15 75055204 75055235 -26325286 - MIR SINE MIR -63 145 147 1478 139 22 0 chr15 75055235 75055458 -26325063 - AluJb SINE Alu -84 228 1 307 227 15 0 chr15 75055458 75055521 -26325000 - MIR SINE MIR -60 148 87 205 339 0 0 chr15 75056150 75056206 -26324315 - MIR SINE MIR -76 132 77 1718 158 40 14 chr15 75056701 75056942 -26323579 - MER46B DNA MER2_type -2497 234 105 2202 93 3 13 chr15 75056942 75057244 -26323277 + AluSx SINE Alu 1 299 -13 1718 158 40 14 chr15 75057244 75057349 -26323172 - MER46B DNA MER2_type -2626 105 4 185 357 63 21 chr15 75057524 75057667 -26322854 + L2 LINE L2 3000 3148 -124 444 128 0 0 chr15 75057744 75057822 -26322699 + (CA)n Simple_repeat Simple_repeat 1 78 0 705 190 0 0 chr15 75058193 75058367 -26322154 + (CA)n Simple_repeat Simple_repeat 2 175 0 213 39 0 0 chr15 75260323 75260349 -26120172 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1836 149 0 11 chr15 75260352 75260634 -26119887 - AluJb SINE Alu -31 281 3 15868 129 40 17 chr15 75261274 75263933 -26116588 + Tigger2 DNA MER2_type 1 2718 0 219 272 284 0 chr15 75263971 75264052 -26116469 + MER5A DNA MER1_type 85 188 -1 24 0 0 0 chr15 75264447 75264471 -26116050 + AT_rich Low_complexity Low_complexity 1 24 0 1606 94 13 4 chr15 75264698 75264931 -26115590 - AluY SINE Alu -76 235 1 1370 145 18 0 chr15 75265642 75265869 -26114652 - Tigger2 DNA MER2_type -5 2713 2483 2241 85 3 23 chr15 75265875 75266180 -26114341 + AluY SINE Alu 1 299 -12 735 240 3 59 chr15 75266184 75266471 -26114050 + AluJo SINE Alu 37 307 -5 1955 131 24 3 chr15 75266622 75266959 -26113562 + L1MA5A LINE L1 5946 6289 -8 25 0 0 0 chr15 75266960 75266985 -26113536 + AT_rich Low_complexity Low_complexity 1 25 0 4909 177 60 18 chr15 75267020 75267917 -26112604 - Charlie1a DNA MER1_type -1574 1187 329 1908 156 0 4 chr15 75267917 75268193 -26112328 - AluJb SINE Alu -37 275 1 4909 177 60 18 chr15 75268193 75268224 -26112297 - Charlie1a DNA MER1_type -2432 329 301 180 0 0 0 chr15 75268224 75268244 -26112277 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4909 177 60 18 chr15 75268244 75268382 -26112139 - Charlie1a DNA MER1_type -2460 301 75 24 0 0 0 chr15 75268440 75268464 -26112057 + AT_rich Low_complexity Low_complexity 1 24 0 1926 123 17 33 chr15 75268464 75268823 -26111698 - L1MA7 LINE L1 -4 6287 5935 295 292 154 0 chr15 75268841 75268971 -26111550 + L2 LINE L2 2863 3012 -260 258 302 78 0 chr15 75269072 75269201 -26111320 - MIR SINE MIR -10 252 114 7634 30 1 0 chr15 75269814 75271434 -26109087 + L1PA3 LINE L1 4564 6184 0 1063 183 16 0 chr15 75271541 75271727 -26108794 + MER5A DNA MER1_type 1 189 0 2199 100 7 0 chr15 75272105 75272395 -26108126 - AluSq SINE Alu -21 292 1 256 314 34 0 chr15 75273064 75273165 -26107356 + MIR SINE MIR 31 136 -72 189 0 0 0 chr15 75273803 75273824 -26106697 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2172 125 10 0 chr15 75274639 75274942 -26105579 - AluSq SINE Alu -7 306 1 2176 91 17 7 chr15 75274942 75275238 -26105283 - AluSx SINE Alu -13 299 1 557 299 28 51 chr15 75275474 75275688 -26104833 - MIR SINE MIR -48 214 6 202 208 125 0 chr15 75276075 75276123 -26104398 - MIR SINE MIR 0 262 209 837 205 21 21 chr15 75276143 75276333 -26104188 - MER20 DNA MER1_type -21 198 9 640 288 41 6 chr15 75276334 75276504 -26104017 - MIR SINE MIR -81 181 6 474 276 60 15 chr15 75276508 75276640 -26103881 - MIR SINE MIR -116 146 9 629 267 76 12 chr15 75276640 75276812 -26103709 - MER5A DNA MER1_type 0 189 7 2597 66 0 0 chr15 75277479 75277811 -26102710 - L1PA6 LINE L1 0 6154 5823 252 0 0 0 chr15 75277979 75278007 -26102514 + (CA)n Simple_repeat Simple_repeat 1 28 0 1070 216 32 5 chr15 75278127 75278345 -26102176 - MER58A DNA MER1_type 0 224 1 663 185 9 0 chr15 75278859 75278967 -26101554 - FLAM_A SINE Alu -32 110 2 1246 269 108 12 chr15 75279331 75279811 -26100710 - L2 LINE L2 -613 2701 2176 466 237 45 13 chr15 75279870 75280026 -26100495 + L1MC5 LINE L1 7765 7925 -36 475 309 126 0 chr15 75280393 75280600 -26099921 - MIR SINE MIR -29 233 1 21 0 0 0 chr15 75280830 75280851 -26099670 + AT_rich Low_complexity Low_complexity 1 21 0 492 226 75 0 chr15 75280940 75281086 -26099435 - Charlie1 DNA MER1_type 0 2761 2605 1787 195 63 16 chr15 75281502 75281948 -26098573 + MLT1C LTR MaLR 1 467 0 3463 119 58 50 chr15 75282095 75282304 -26098217 - Tigger3b DNA MER2_type -1804 1225 1019 2190 110 57 28 chr15 75282304 75282658 -26097863 + THE1B LTR MaLR 1 364 0 11845 83 1 24 chr15 75282658 75283126 -26097395 + THE1B-int LTR MaLR 1 478 -1102 2238 121 0 0 chr15 75283126 75283431 -26097090 + AluSx SINE Alu 6 310 -2 11845 83 1 24 chr15 75283431 75284580 -26095941 + THE1B-int LTR MaLR 478 1580 0 2396 102 48 20 chr15 75284580 75284934 -26095587 + THE1B LTR MaLR 1 364 0 3463 119 58 50 chr15 75284934 75285319 -26095202 - Tigger3b DNA MER2_type -2010 1019 621 2025 135 10 3 chr15 75285319 75285615 -26094906 + AluSx SINE Alu 1 298 -14 3463 119 58 50 chr15 75285615 75285730 -26094791 - Tigger3b DNA MER2_type -2408 621 508 801 146 0 0 chr15 75285723 75285853 -26094668 + MLT1B LTR MaLR 43 172 -218 * 2981 121 53 2 chr15 75285884 75286371 -26094150 - Tigger3b DNA MER2_type -718 513 2 199 140 40 0 chr15 75286538 75286588 -26093933 + (TA)n Simple_repeat Simple_repeat 2 53 0 182 174 22 0 chr15 75286590 75286636 -26093885 + GA-rich Low_complexity Low_complexity 2 48 0 364 254 70 9 chr15 75286645 75286759 -26093762 + L2 LINE L2 3193 3313 0 2582 204 24 30 chr15 75286780 75287453 -26093068 + L1MB7 LINE L1 3441 4109 -2037 1298 166 126 29 chr15 75287455 75287732 -26092789 - AluSg1 SINE Alu 0 309 6 4392 193 54 16 chr15 75287736 75289735 -26090786 + L1MB7 LINE L1 4102 6169 -15 328 270 177 67 chr15 75290047 75290614 -26089907 + L2 LINE L2 2587 3230 -42 188 241 74 0 chr15 75291056 75291110 -26089411 + L2 LINE L2 3003 3060 -212 2065 125 3 3 chr15 75291901 75292196 -26088325 + AluSx SINE Alu 1 295 -17 269 286 238 0 chr15 75292334 75292460 -26088061 + L2 LINE L2 2620 2775 -539 320 273 0 0 chr15 75292611 75292677 -26087844 + L2 LINE L2 3202 3267 -5 211 261 45 57 chr15 75294121 75294209 -26086312 - L2 LINE L2 -2 3270 3184 914 198 57 0 chr15 75294678 75294870 -26085651 + MER3 DNA MER1_type 1 203 -6 1830 142 7 24 chr15 75295470 75295765 -26084756 + AluJo SINE Alu 1 290 -22 377 394 17 11 chr15 75295874 75296049 -26084472 - MIR SINE MIR -85 177 2 1882 167 3 3 chr15 75296590 75296884 -26083637 - AluJb SINE Alu -17 295 2 608 257 123 16 chr15 75297083 75297270 -26083251 + MIR SINE MIR 12 218 -44 22 0 0 0 chr15 75297328 75297350 -26083171 + AT_rich Low_complexity Low_complexity 1 22 0 42089 37 6 3 chr15 75297350 75303480 -26077041 - L1PA4 LINE L1 -3 6152 7 548 293 7 0 chr15 75304335 75304475 -26076046 - L3 LINE CR1 -3 1574 1434 388 337 212 22 chr15 75304535 75304936 -26075585 + L2 LINE L2 2501 2977 -337 2247 101 0 0 chr15 75307231 75307519 -26073002 + AluSc SINE Alu 1 288 -21 2330 93 17 0 chr15 75308526 75308827 -26071694 + AluSg SINE Alu 1 306 -4 2248 108 3 3 chr15 75309047 75309354 -26071167 + AluSx SINE Alu 1 307 -5 2010 148 7 13 chr15 75314780 75315084 -26065437 + AluJb SINE Alu 1 302 -10 574 314 13 7 chr15 75315084 75315237 -26065284 - L2 LINE L2 -476 2838 2685 1290 219 49 52 chr15 75315348 75315677 -26064844 + Cheshire DNA MER1_type 2 329 -2091 21 0 0 0 chr15 75315733 75315754 -26064767 + AT_rich Low_complexity Low_complexity 1 21 0 1032 148 64 10 chr15 75315754 75315956 -26064565 + Cheshire DNA MER1_type 2082 2294 -126 1576 190 61 100 chr15 75315972 75316142 -26064379 + L1ME1 LINE L1 5187 5362 -804 1814 172 0 10 chr15 75316142 75316445 -26064076 - AluJb SINE Alu -12 300 1 1576 190 61 100 chr15 75316445 75316929 -26063592 + L1ME1 LINE L1 5362 6083 -83 1857 122 0 19 chr15 75316929 75317191 -26063330 + AluSx SINE Alu 1 257 -55 1576 190 61 100 chr15 75317191 75317268 -26063253 + L1ME1 LINE L1 6083 6161 -5 236 308 84 28 chr15 75317274 75317555 -26062966 - L2 LINE L2 -610 2704 2348 837 248 93 31 chr15 75317738 75318158 -26062363 - L2 LINE L2 -1267 2047 1602 322 303 136 13 chr15 75318151 75318306 -26062215 - MIR3 SINE MIR 0 208 35 * 583 52 0 0 chr15 75318874 75318951 -26061570 + L1PA4 LINE L1 6079 6155 0 289 342 8 33 chr15 75320921 75321041 -26059480 + L2 LINE L2 2939 3055 -217 569 169 151 54 chr15 75321179 75321229 -26059292 - MIR SINE MIR -21 241 197 2333 91 0 16 chr15 75321229 75321537 -26058984 + AluSx SINE Alu 1 303 -9 569 169 151 54 chr15 75321537 75321652 -26058869 - MIR SINE MIR -65 197 60 195 100 0 0 chr15 75321652 75321682 -26058839 + (CATG)n Simple_repeat Simple_repeat 2 31 0 207 0 0 0 chr15 75321755 75321778 -26058743 + (CAG)n Simple_repeat Simple_repeat 1 23 0 326 286 48 24 chr15 75323517 75323643 -26056878 + MIR SINE MIR 131 259 -3 23 54 0 0 chr15 75325143 75325180 -26055341 + AT_rich Low_complexity Low_complexity 1 37 0 1702 123 0 0 chr15 75325890 75326117 -26054404 + AluSx SINE Alu 55 281 -31 516 16 0 0 chr15 75326118 75326179 -26054342 + (CTAAA)n Simple_repeat Simple_repeat 4 64 0 187 232 159 14 chr15 75326279 75326348 -26054173 + L2 LINE L2 2232 2310 -1004 4388 89 96 13 chr15 75327709 75327934 -26052587 - PABL_B LTR ERV1 0 667 462 2261 81 0 3 chr15 75327934 75328238 -26052283 - AluY SINE Alu 0 303 1 4388 89 96 13 chr15 75328238 75328627 -26051894 - PABL_B LTR ERV1 -205 462 1 201 39 0 0 chr15 75330371 75330397 -26050124 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 2187 108 7 0 chr15 75331679 75331967 -26048554 - AluSx SINE Alu -22 290 1 366 23 0 0 chr15 75334230 75334273 -26046248 + (CA)n Simple_repeat Simple_repeat 2 44 0 212 292 69 0 chr15 75337065 75337137 -26043384 - MIR SINE MIR -29 233 157 456 35 0 0 chr15 75338260 75338318 -26042203 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 443 208 149 58 chr15 75338811 75338965 -26041556 + MIR SINE MIR 25 192 -70 791 350 106 15 chr15 75341794 75342334 -26038187 + L2 LINE L2 2197 2785 -529 21 57 0 0 chr15 75342606 75342641 -26037880 + AT_rich Low_complexity Low_complexity 1 35 0 1142 112 31 0 chr15 75342641 75342802 -26037719 - L1PA16 LINE L1 -5 6161 5996 223 263 35 0 chr15 75342836 75342893 -26037628 + L2 LINE L2 3201 3259 -13 197 257 54 27 chr15 75344017 75344091 -26036430 - MIR SINE MIR -135 127 52 186 250 206 0 chr15 75345045 75345137 -26035384 + MIR SINE MIR 33 143 -65 272 403 158 32 chr15 75345530 75346508 -26034013 + L2 LINE L2 1757 2858 -456 307 279 14 100 chr15 75346684 75346824 -26033697 + L2 LINE L2 3179 3306 -7 293 358 42 0 chr15 75346803 75346923 -26033598 - L2 LINE L2 -10 3262 3138 * 604 279 38 72 chr15 75347094 75347148 -26033373 - MIR SINE MIR -3 259 205 294 29 0 0 chr15 75347148 75347183 -26033338 + (TG)n Simple_repeat Simple_repeat 2 36 0 604 279 38 72 chr15 75347183 75347390 -26033131 - MIR SINE MIR -57 205 7 232 300 161 31 chr15 75347393 75347523 -26032998 - MER5A DNA MER1_type -5 184 38 328 335 30 0 chr15 75347874 75348041 -26032480 - L1ME4a LINE L1 -225 5896 5725 217 283 147 13 chr15 75348287 75348448 -26032073 - MIR SINE MIR -50 212 28 1255 204 37 112 chr15 75348611 75349013 -26031508 + MLT1A2 LTR MaLR 1 372 -2 3376 205 151 102 chr15 75349013 75349467 -26031054 + MLT1A2-int LTR MaLR 3 433 -938 2168 127 3 0 chr15 75349467 75349766 -26030755 + AluSx SINE Alu 1 300 -12 3376 205 151 102 chr15 75349766 75350601 -26029920 + MLT1A2-int LTR MaLR 433 1356 -15 1221 225 38 91 chr15 75350622 75351017 -26029504 + MLT1A2 LTR MaLR 1 374 0 1925 123 20 33 chr15 75351112 75351414 -26029107 - AluSx SINE Alu -14 298 1 290 304 13 13 chr15 75352616 75352695 -26027826 - MIR SINE MIR -176 86 8 545 263 119 51 chr15 75352821 75352882 -26027639 + MIR SINE MIR 7 62 -200 2245 86 3 7 chr15 75352882 75353193 -26027328 + AluSc SINE Alu 1 309 0 545 263 119 51 chr15 75353193 75353367 -26027154 + MIR SINE MIR 62 258 -4 930 172 13 6 chr15 75353466 75353623 -26026898 + AluJo SINE Alu 3 160 -152 349 95 5 0 chr15 75353623 75353681 -26026840 + AluJ/FRAM SINE Alu 217 257 -45 1872 152 0 14 chr15 75353757 75354053 -26026468 - AluJb SINE Alu -20 292 1 2373 96 0 0 chr15 75354081 75354382 -26026139 + AluSq SINE Alu 1 301 -12 211 290 81 0 chr15 75354521 75354583 -26025938 + L2 LINE L2 3247 3313 0 1125 145 88 9 chr15 75356370 75356597 -26023924 - Tigger2 DNA MER2_type -207 2511 2267 447 152 0 0 chr15 75356581 75356647 -26023874 - Tigger2 DNA MER2_type -2649 69 4 * 2444 207 46 3 chr15 75356791 75357791 -26022730 + L1MC2 LINE L1 4672 5708 -625 1934 103 8 8 chr15 75357978 75358241 -26022280 + AluSg SINE Alu 27 289 -21 23 54 0 0 chr15 75358598 75358635 -26021886 + AT_rich Low_complexity Low_complexity 1 37 0 8459 9 0 0 chr15 75359155 75360171 -26020350 - L1PA2 LINE L1 0 6155 5139 3528 34 0 0 chr15 75360167 75360585 -26019936 + L1PA2 LINE L1 4715 5132 -1014 * 2295 126 61 50 chr15 75360716 75361178 -26019343 + L1MC2 LINE L1 5694 6160 -184 351 289 97 66 chr15 75361456 75361684 -26018837 - MIR SINE MIR -27 235 1 21 0 0 0 chr15 75362193 75362214 -26018307 + AT_rich Low_complexity Low_complexity 1 21 0 232 302 47 54 chr15 75362874 75363023 -26017498 + MIR SINE MIR 43 190 -72 483 110 82 0 chr15 75363053 75363126 -26017395 + MLT1D LTR MaLR 1 79 -426 * 1022 184 11 0 chr15 75363122 75363296 -26017225 + MLT1D LTR MaLR 330 505 0 488 271 56 21 chr15 75363296 75363440 -26017081 + MIR SINE MIR 48 196 -66 1957 129 0 39 chr15 75363926 75364237 -26016284 + AluSx SINE Alu 1 299 -13 869 230 42 9 chr15 75364348 75364561 -26015960 + MER58A DNA MER1_type 2 221 -3 2349 95 3 0 chr15 75364897 75365202 -26015319 + AluSq SINE Alu 1 306 -7 341 281 54 67 chr15 75365410 75365608 -26014913 - MIR SINE MIR -44 218 19 2084 131 3 0 chr15 75366739 75367044 -26013477 + AluSg SINE Alu 1 306 -4 2529 222 54 13 chr15 75367098 75367592 -26012929 - L1ME1 LINE L1 -2 6183 5711 1707 155 145 36 chr15 75367592 75367664 -26012857 - MSTA LTR MaLR 0 428 365 2439 70 0 25 chr15 75367664 75367978 -26012543 + AluY SINE Alu 1 306 -5 1707 155 145 36 chr15 75367978 75368291 -26012230 - MSTA LTR MaLR -63 365 1 2529 222 54 13 chr15 75368291 75368712 -26011809 - L1ME1 LINE L1 -474 5711 5140 1623 132 125 22 chr15 75368712 75369023 -26011498 + MER2 DNA MER2_type 2 344 0 2529 222 54 13 chr15 75369023 75369063 -26011458 - L1ME1 LINE L1 -1045 5140 5103 3435 208 69 36 chr15 75369129 75369586 -26010935 - L1ME1 LINE L1 -1053 5093 4652 8018 113 35 24 chr15 75369586 75370281 -26010240 + HSMAR2 DNA Mariner 2 719 -583 1634 186 41 0 chr15 75370281 75370576 -26009945 + AluJb SINE Alu 1 307 -5 8018 113 35 24 chr15 75370576 75371166 -26009355 + HSMAR2 DNA Mariner 719 1301 -1 3435 208 69 36 chr15 75371166 75371900 -26008621 - L1ME1 LINE L1 -1494 4652 3690 1035 207 0 0 chr15 75371900 75372074 -26008447 - FAM SINE Alu 0 175 2 319 371 20 30 chr15 75372397 75372594 -26007927 - L2 LINE L2 -575 2739 2545 403 280 186 51 chr15 75373976 75374330 -26006191 + L1ME4a LINE L1 5599 6000 -121 419 258 5 113 chr15 75375701 75375887 -26004634 - MIR SINE MIR -16 246 81 509 213 21 0 chr15 75376263 75376357 -26004164 + MER5A DNA MER1_type 9 104 -85 21 0 0 0 chr15 75376393 75376414 -26004107 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr15 75377215 75377238 -26003283 + (T)n Simple_repeat Simple_repeat 1 23 0 215 371 117 21 chr15 75378145 75378436 -26002085 + L2 LINE L2 2491 2809 -505 441 295 108 16 chr15 75378454 75378583 -26001938 - MIR SINE MIR -121 141 1 279 0 0 0 chr15 75378958 75378989 -26001532 + (TG)n Simple_repeat Simple_repeat 2 32 0 279 0 0 0 chr15 75378995 75379026 -26001495 + (TA)n Simple_repeat Simple_repeat 1 31 0 434 101 14 0 chr15 75379373 75379442 -26001079 + (TA)n Simple_repeat Simple_repeat 2 71 0 454 264 114 64 chr15 75380078 75380298 -26000223 - MIR SINE MIR -3 259 29 460 294 68 7 chr15 75380321 75380485 -26000036 - MER5A DNA MER1_type 0 189 6 1678 193 7 0 chr15 75381044 75381345 -25999176 + AluJo SINE Alu 1 303 -9 890 44 0 0 chr15 75381445 75381559 -25998962 - L1PA4 LINE L1 -1 6154 6041 232 367 9 18 chr15 75381786 75381895 -25998626 - MIR3 SINE MIR -17 191 84 883 202 122 8 chr15 75381962 75382209 -25998312 + ORSL DNA AcHobo 1 275 0 2200 120 3 0 chr15 75382965 75383273 -25997248 - AluSq SINE Alu -2 311 3 2233 102 3 0 chr15 75383534 75383827 -25996694 - AluSx SINE Alu -18 294 1 665 190 5 3 chr15 75383944 75384161 -25996360 + AluJo SINE Alu 1 282 -30 186 43 0 0 chr15 75384161 75384184 -25996337 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 189 0 0 0 chr15 75385274 75385295 -25995226 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 181 318 0 15 chr15 75385344 75385410 -25995111 + MER5A DNA MER1_type 7 71 -118 3119 301 82 18 chr15 75385412 75385643 -25994878 + L2 LINE L2 912 1127 -2187 216 0 0 0 chr15 75385643 75385667 -25994854 + (CA)n Simple_repeat Simple_repeat 2 25 0 3119 301 82 18 chr15 75385667 75386067 -25994454 + L2 LINE L2 1127 1500 -1814 2109 124 0 7 chr15 75386067 75386374 -25994147 - AluSq SINE Alu -6 307 3 3119 301 82 18 chr15 75386374 75387065 -25993456 + L2 LINE L2 1500 2320 -994 1584 196 0 17 chr15 75387201 75387492 -25993029 - AluJo SINE Alu -22 290 5 411 276 83 23 chr15 75387501 75387718 -25992803 - L1M4 LINE L1 -2766 3380 3151 443 267 18 12 chr15 75387787 75387952 -25992569 - HAL1b LINE L1 0 1348 1183 30 0 0 0 chr15 75387992 75388022 -25992499 + AT_rich Low_complexity Low_complexity 1 30 0 1019 174 0 55 chr15 75388028 75388229 -25992292 - AluJo SINE Alu -75 237 48 1450 140 31 42 chr15 75388231 75388517 -25992004 + THE1C LTR MaLR 93 375 0 9878 113 54 9 chr15 75388518 75390029 -25990492 + THE1C-int LTR MaLR 2 1580 0 2195 116 9 24 chr15 75390029 75390365 -25990156 + THE1C LTR MaLR 1 331 -44 394 253 79 15 chr15 75390389 75390591 -25989930 - HAL1b LINE L1 -190 1158 944 301 281 55 7 chr15 75390592 75390738 -25989783 - L1M4 LINE L1 -3098 3048 2896 260 299 0 21 chr15 75391514 75391611 -25988910 - HAL1 LINE L1 -897 1610 1516 413 353 5 27 chr15 75391736 75391923 -25988598 - HAL1 LINE L1 -1487 1020 838 455 289 171 11 chr15 75392688 75392911 -25987610 + MIR SINE MIR 1 259 -3 1483 149 100 11 chr15 75393667 75393936 -25986585 + AluJb SINE Alu 1 293 -19 369 213 6 6 chr15 75394131 75394228 -25986293 + L1ME LINE L1 5339 5438 -726 * 2944 213 49 71 chr15 75394227 75395284 -25985237 + L1M4 LINE L1 3584 4620 -1526 381 293 57 50 chr15 75395272 75395555 -25984966 - L1ME4a LINE L1 -232 5889 5605 * 2229 113 7 0 chr15 75397017 75397327 -25983194 + AluSp SINE Alu 1 312 -1 1873 139 63 3 chr15 75397914 75398201 -25982320 - AluSx SINE Alu -8 304 1 809 221 0 29 chr15 75398536 75398708 -25981813 + AluJb SINE Alu 133 299 -13 837 251 28 42 chr15 75398756 75399043 -25981478 + AluSx SINE Alu 1 283 -19 2407 82 0 0 chr15 75399221 75399514 -25981007 - AluSc SINE Alu -16 293 1 287 180 16 0 chr15 75399519 75399580 -25980941 - L1M4 LINE L1 -1538 4608 4547 788 191 66 7 chr15 75399581 75399733 -25980788 + AluJb SINE Alu 133 293 -19 1433 231 74 45 chr15 75399739 75399947 -25980574 - L1M4 LINE L1 -1600 4546 4345 1961 127 7 3 chr15 75399947 75400231 -25980290 + AluSg SINE Alu 3 287 -23 1433 231 74 45 chr15 75400231 75400615 -25979906 - L1M4 LINE L1 -1801 4345 3937 1419 143 60 49 chr15 75400687 75400953 -25979568 - AluSx SINE Alu -4 308 40 1013 238 97 0 chr15 75400954 75401253 -25979268 - L1M4 LINE L1 -2265 3881 3554 810 148 0 22 chr15 75401268 75401403 -25979118 - FLAM_C SINE Alu -1 132 1 243 301 154 19 chr15 75401429 75401585 -25978936 + MIR SINE MIR 12 188 -74 1902 153 16 22 chr15 75401606 75401926 -25978595 + MLT1A1 LTR MaLR 11 328 -37 243 0 0 0 chr15 75402006 75402033 -25978488 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 1781 134 21 11 chr15 75402044 75402328 -25978193 - AluSx SINE Alu -25 287 1 684 109 0 0 chr15 75402938 75403030 -25977491 - AluS SINE Alu -221 92 1 21 0 0 0 chr15 75403177 75403198 -25977323 + AT_rich Low_complexity Low_complexity 1 21 0 795 97 0 0 chr15 75403351 75403465 -25977056 + (TA)n Simple_repeat Simple_repeat 2 115 0 2087 86 28 41 chr15 75403465 75403628 -25976893 - AluSx SINE Alu -22 290 131 2254 113 0 3 chr15 75403628 75403939 -25976582 - AluY SINE Alu -1 310 1 2087 86 28 41 chr15 75403939 75404065 -25976456 - AluSx SINE Alu -181 131 5 1963 186 70 34 chr15 75404842 75405311 -25975210 + MER66B LTR ERV1 1 486 0 636 183 22 66 chr15 75406368 75406505 -25974016 - MER2 DNA MER2_type -214 131 1 1011 300 52 41 chr15 75406527 75407031 -25973490 - L1MEc LINE L1 -4452 1944 1426 2000 129 20 3 chr15 75407031 75407326 -25973195 - AluSq SINE Alu -13 300 1 1011 300 52 41 chr15 75407326 75407607 -25972914 - L1MEc LINE L1 -4970 1426 1150 1884 172 0 7 chr15 75407639 75407936 -25972585 - AluJb SINE Alu -14 298 4 571 312 131 24 chr15 75407997 75408334 -25972187 - L2 LINE L2 -32 3281 2909 1006 234 35 0 chr15 75409701 75409927 -25970594 + MER58B DNA MER1_type 2 235 -106 12900 35 4 0 chr15 75409935 75412253 -25968268 - L1PA3 LINE L1 -3 6152 3826 488 272 9 0 chr15 75412253 75412367 -25968154 + MER58B DNA MER1_type 221 335 -6 24 0 0 0 chr15 75412501 75412525 -25967996 + AT_rich Low_complexity Low_complexity 1 24 0 1456 301 63 40 chr15 75412811 75413864 -25966657 + L1MEc LINE L1 37 1113 -5283 746 75 0 0 chr15 75413865 75413958 -25966563 + L1PA3 LINE L1 4 96 -6050 38341 38 5 1 chr15 75413958 75419487 -25961034 + L1PA3 LINE L1 623 6176 0 1510 237 52 3 chr15 75419545 75419891 -25960630 + L1MDa LINE L1 812 1174 -5366 1147 161 5 0 chr15 75419894 75420093 -25960428 + L1PBa LINE L1 1 200 -6663 9988 120 56 4 chr15 75420095 75421392 -25959129 + L1PBa LINE L1 636 1864 -4998 2110 136 3 0 chr15 75421392 75421693 -25958828 + AluSx SINE Alu 1 302 -10 9988 120 56 4 chr15 75421693 75423019 -25957502 + L1PBa LINE L1 1864 3538 -3324 2280 51 31 0 chr15 75423020 75423313 -25957208 - L1P LINE L1 -3145 3001 2700 * 4502 17 2 0 chr15 75423299 75423818 -25956703 + L1P LINE L1 3961 4480 -1666 1863 44 0 0 chr15 75423830 75424056 -25956465 - L1P LINE L1 -1450 4696 4471 * 6172 43 1 1 chr15 75424053 75424990 -25955531 + L1PA5 LINE L1 5065 6001 -153 27 0 0 0 chr15 75425784 75425811 -25954710 + AT_rich Low_complexity Low_complexity 1 27 0 1347 245 118 2 chr15 75425834 75426266 -25954255 - L1MC4 LINE L1 -143 7899 7418 1201 220 38 17 chr15 75426333 75426624 -25953897 - L1MC4 LINE L1 -937 7105 6809 9173 184 59 29 chr15 75427021 75429693 -25950828 - L1MC3 LINE L1 -591 7194 4431 2114 155 5 8 chr15 75429846 75430213 -25950308 + L1MC1 LINE L1 5968 6333 0 833 133 105 0 chr15 75430215 75430396 -25950125 + L1ME1 LINE L1 5729 5928 -236 1904 110 19 0 chr15 75430851 75431114 -25949407 - AluSx SINE Alu -12 300 33 339 25 0 0 chr15 75431115 75431155 -25949366 + (TG)n Simple_repeat Simple_repeat 2 41 0 578 283 56 39 chr15 75431868 75432077 -25948444 + L1ME1 LINE L1 5911 6126 -40 1941 133 3 14 chr15 75432077 75432371 -25948150 + AluSq SINE Alu 1 291 -22 578 283 56 39 chr15 75432371 75432394 -25948127 + L1ME1 LINE L1 6126 6147 -19 252 276 143 29 chr15 75432477 75432582 -25947939 + MIR3 SINE MIR 50 166 -42 1951 114 17 43 chr15 75432895 75433194 -25947327 + AluSx SINE Alu 1 291 -21 208 211 0 0 chr15 75434158 75434196 -25946325 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 294 22 33 chr15 75436084 75436176 -25944345 + MIR SINE MIR 120 210 -52 181 315 19 0 chr15 75436216 75436270 -25944251 + MIR3 SINE MIR 117 171 -37 265 276 105 53 chr15 75436350 75436502 -25944019 - MIR3 SINE MIR -27 181 22 1966 124 21 7 chr15 75436747 75436872 -25943649 + AluSc SINE Alu 1 123 -186 369 0 0 0 chr15 75436872 75436913 -25943608 + (CA)n Simple_repeat Simple_repeat 2 42 0 1966 124 21 7 chr15 75436913 75437078 -25943443 + AluSc SINE Alu 123 295 -14 514 222 216 6 chr15 75437130 75437301 -25943220 + MIR SINE MIR 50 256 -6 277 325 54 22 chr15 75437486 75437620 -25942901 + MIR SINE MIR 1 145 -63 3750 77 19 19 chr15 75437680 75438250 -25942271 - L1P LINE L1 -2836 3310 2741 1040 16 0 0 chr15 75438877 75438998 -25941523 + L1PA5 LINE L1 6033 6153 -1 11180 198 15 25 chr15 75438998 75442244 -25938277 + L1PA10 LINE L1 2814 6014 -154 5006 83 4 4 chr15 75441696 75442379 -25938142 + L1PB1 LINE L1 5469 6151 0 * 331 190 17 0 chr15 75442420 75442478 -25938043 + Tigger2 DNA MER2_type 1 59 -2659 2046 113 27 10 chr15 75442491 75442816 -25937705 + AluSg SINE Alu 1 310 0 4169 172 72 79 chr15 75442844 75444156 -25936365 + L1MDa LINE L1 1158 2460 -4080 1647 162 88 20 chr15 75444153 75444505 -25936016 + L1MD2 LINE L1 5769 6144 -215 * 681 193 6 43 chr15 75444506 75444667 -25935854 + L1MD2 LINE L1 6195 6349 -10 568 329 154 55 chr15 75445441 75446202 -25934319 + L2 LINE L2 2067 2902 -412 2210 66 49 0 chr15 75446560 75446846 -25933675 + AluY SINE Alu 1 300 -11 2171 92 20 3 chr15 75447455 75447747 -25932774 + AluSx SINE Alu 3 299 -13 2097 123 3 7 chr15 75447876 75448034 -25932487 - AluSx SINE Alu -20 292 134 1992 127 25 0 chr15 75448034 75448318 -25932203 - AluSx SINE Alu -21 291 1 2097 123 3 7 chr15 75448318 75448452 -25932069 - AluSx SINE Alu -178 134 1 1035 153 60 56 chr15 75448454 75448669 -25931852 - AluJb SINE Alu -12 300 85 2469 67 0 0 chr15 75449595 75449894 -25930627 + AluY SINE Alu 1 299 -12 2912 218 11 35 chr15 75450015 75450679 -25929842 + MER82 DNA MER2_type 5 652 -1 201 273 0 0 chr15 75450679 75450734 -25929787 + (TA)n Simple_repeat Simple_repeat 1 55 0 307 375 127 8 chr15 75451252 75451511 -25929010 + L2 LINE L2 2807 3096 -176 311 244 76 17 chr15 75451747 75451866 -25928655 - MLT1L LTR MaLR -56 559 434 34 42 0 0 chr15 75452206 75452254 -25928267 + AT_rich Low_complexity Low_complexity 1 48 0 207 319 109 17 chr15 75452383 75452502 -25928019 + MIR SINE MIR 92 221 -41 233 211 28 0 chr15 75454151 75454222 -25926299 + L1MA4 LINE L1 6226 6298 -2 2233 106 0 6 chr15 75454231 75454542 -25925979 + AluSx SINE Alu 3 311 -1 1243 86 6 6 chr15 75455212 75455375 -25925146 - AluY SINE Alu -148 163 1 187 327 0 0 chr15 75455483 75455538 -25924983 + MIR SINE MIR 96 150 -112 1184 179 20 5 chr15 75455577 75455778 -25924743 + AluJb SINE Alu 86 289 -23 513 147 0 0 chr15 75455778 75455873 -25924648 + (GGGA)n Simple_repeat Simple_repeat 2 96 0 1175 199 179 3 chr15 75456296 75456587 -25923934 + MER2 DNA MER2_type 2 343 -1 272 152 0 0 chr15 75456588 75456634 -25923887 + MADE1 DNA Mariner 1 46 -34 22 0 0 0 chr15 75457726 75457748 -25922773 + AT_rich Low_complexity Low_complexity 1 22 0 320 309 43 0 chr15 75457817 75457911 -25922610 + MIR3 SINE MIR 58 155 -53 292 301 90 45 chr15 75458854 75459010 -25921511 + MIR SINE MIR 99 261 -1 376 318 219 0 chr15 75460510 75460702 -25919819 + L3 LINE CR1 1145 1378 -199 390 337 205 30 chr15 75461442 75461813 -25918708 - L2 LINE L2 -341 2973 2538 236 366 109 37 chr15 75462000 75462023 -25918498 - L2 LINE L2 -358 2956 2936 2044 116 12 38 chr15 75462023 75462342 -25918179 + AluSx SINE Alu 1 311 -1 236 366 109 37 chr15 75462342 75462859 -25917662 - L2 LINE L2 -378 2936 2377 379 296 90 56 chr15 75463139 75463494 -25917027 - MLT1J LTR MaLR -22 489 123 1747 190 102 24 chr15 75463663 75464085 -25916436 + L1MC3 LINE L1 6716 7170 -615 1247 88 6 0 chr15 75464089 75464271 -25916250 - AluSp SINE Alu 0 307 125 555 118 0 0 chr15 75464271 75464356 -25916165 + (TG)n Simple_repeat Simple_repeat 1 85 0 198 91 0 0 chr15 75464356 75464389 -25916132 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 970 90 0 0 chr15 75464389 75464511 -25916010 - AluSp SINE Alu -191 122 1 1292 122 16 0 chr15 75464513 75464702 -25915819 + L1MC3 LINE L1 7162 7353 -432 2222 112 0 3 chr15 75465002 75465297 -25915224 - AluSg SINE Alu -16 294 1 1012 135 65 11 chr15 75465506 75465691 -25914830 + L1PA16 LINE L1 5963 6157 -9 203 53 0 53 chr15 75466248 75466286 -25914235 + (TAAAAA)n Simple_repeat Simple_repeat 2 37 0 2010 142 62 31 chr15 75466320 75466742 -25913779 + L1MC3 LINE L1 7351 7785 0 231 285 204 0 chr15 75466873 75467010 -25913511 - L1ME4a LINE L1 -22 6099 5935 251 252 243 36 chr15 75467219 75467330 -25913191 + L2 LINE L2 3180 3313 0 287 233 134 47 chr15 75467384 75467425 -25913096 + L1ME4a LINE L1 5847 5883 -238 2124 123 0 10 chr15 75467425 75467725 -25912796 + AluSx SINE Alu 1 297 -15 287 233 134 47 chr15 75467725 75467936 -25912585 + L1ME4a LINE L1 5883 6121 0 2169 216 25 20 chr15 75468484 75468994 -25911527 + L1MD2 LINE L1 5825 6337 -22 331 273 94 16 chr15 75469123 75469251 -25911270 + L3 LINE CR1 1368 1505 -72 51 65 0 0 chr15 75469251 75469344 -25911177 + AT_rich Low_complexity Low_complexity 1 93 0 21 0 0 0 chr15 75470297 75470318 -25910203 + AT_rich Low_complexity Low_complexity 1 21 0 291 363 123 7 chr15 75470906 75471052 -25909469 + L2 LINE L2 3101 3263 -9 7309 38 8 2 chr15 75471294 75472526 -25907995 - L1PA4 LINE L1 -5 6150 4915 17852 29 1 2 chr15 75472526 75474684 -25905837 + L1PA4 LINE L1 2755 4911 -1235 322 289 154 0 chr15 75474703 75474807 -25905714 + L2 LINE L2 3153 3272 0 1864 128 42 10 chr15 75474826 75475114 -25905407 + AluSx SINE Alu 2 298 -14 2624 140 31 0 chr15 75475141 75475556 -25904965 - MSTA LTR MaLR 0 428 1 1503 181 41 0 chr15 75475766 75476095 -25904426 + AluJo SINE Alu 1 340 0 246 230 161 0 chr15 75478809 75478896 -25901625 + MIR SINE MIR 118 218 -44 203 286 0 0 chr15 75479163 75479205 -25901316 - L2 LINE L2 -16 3297 3256 194 345 150 0 chr15 75479241 75479354 -25901167 - MIR SINE MIR -129 133 4 25 51 0 0 chr15 75480632 75480671 -25899850 + AT_rich Low_complexity Low_complexity 1 39 0 1028 255 121 44 chr15 75480888 75481607 -25898914 + L2 LINE L2 2534 3310 -3 2092 139 0 0 chr15 75481755 75482057 -25898464 - AluSx SINE Alu -8 304 3 374 226 44 69 chr15 75482058 75482217 -25898304 - L1ME LINE L1 -356 5765 5611 2166 96 4 4 chr15 75482233 75482544 -25897977 - AluSg SINE Alu 0 312 2 963 87 16 0 chr15 75482584 75482710 -25897811 + AluSq/x SINE Alu 1 128 -184 389 129 0 0 chr15 75482710 75482772 -25897749 + Alu SINE Alu 239 300 -1 2284 93 0 3 chr15 75482947 75483247 -25897274 + AluY SINE Alu 1 299 -12 227 305 75 29 chr15 75483488 75483662 -25896859 - L1ME LINE L1 -675 5446 5265 225 0 0 0 chr15 75483772 75483797 -25896724 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 698 160 0 0 chr15 75483803 75483909 -25896612 - FLAM_C SINE Alu -32 111 6 233 284 101 9 chr15 75484589 75484698 -25895823 - L1ME LINE L1 -1541 4605 4487 1450 181 10 45 chr15 75486128 75486420 -25894101 - AluJo SINE Alu -30 282 1 328 315 127 79 chr15 75487185 75487703 -25892818 + L1MC4a LINE L1 5524 6066 -1742 31 0 0 0 chr15 75489261 75489292 -25891229 + AT_rich Low_complexity Low_complexity 1 31 0 1389 177 39 8 chr15 75489745 75489999 -25890522 - AluJb SINE Alu -15 297 36 24 0 0 0 chr15 75490075 75490099 -25890422 + AT_rich Low_complexity Low_complexity 1 24 0 4171 190 55 21 chr15 75490135 75491316 -25889205 + L1MC2 LINE L1 4983 6203 -141 629 263 43 60 chr15 75491348 75491580 -25888941 - MER21B LTR ERV1 -150 713 486 709 158 8 8 chr15 75491584 75491704 -25888817 - FRAM SINE Alu -15 161 42 922 266 47 68 chr15 75491726 75491850 -25888671 - MER21B LTR ERV1 -428 435 310 2142 105 20 10 chr15 75491850 75492146 -25888375 + AluSx SINE Alu 1 299 -13 922 266 47 68 chr15 75492146 75492404 -25888117 - MER21B LTR ERV1 -553 310 61 437 182 91 8 chr15 75492446 75492578 -25887943 + L1MC3 LINE L1 7637 7779 -6 227 77 51 0 chr15 75492558 75492597 -25887924 - L1MC2 LINE L1 -6 6338 6298 * 24 32 0 0 chr15 75492601 75492632 -25887889 + AT_rich Low_complexity Low_complexity 1 31 0 6094 175 47 26 chr15 75492806 75493035 -25887486 - L1MB2 LINE L1 -21 6150 5927 1972 152 3 10 chr15 75493035 75493338 -25887183 - AluJo SINE Alu -11 301 1 6094 175 47 26 chr15 75493338 75494112 -25886409 - L1MB2 LINE L1 -244 5927 5171 2099 126 7 0 chr15 75494112 75494414 -25886107 - AluSx SINE Alu -8 304 1 6094 175 47 26 chr15 75494414 75494726 -25885795 - L1MB2 LINE L1 -1000 5171 4867 2381 77 0 3 chr15 75494726 75495023 -25885498 - AluY SINE Alu -15 296 1 6094 175 47 26 chr15 75495023 75495949 -25884572 - L1MB2 LINE L1 -1304 4867 3872 1192 136 9 5 chr15 75496301 75496514 -25884007 + L1MA4 LINE L1 6078 6291 -9 937 262 124 39 chr15 75497391 75497833 -25882688 - L2 LINE L2 0 3313 2834 262 269 163 35 chr15 75498836 75498977 -25881544 + MIR SINE MIR 33 191 -71 24 32 0 0 chr15 75499059 75499090 -25881431 + AT_rich Low_complexity Low_complexity 1 31 0 245 357 98 9 chr15 75499140 75499252 -25881269 - MIR3 SINE MIR -53 155 34 198 267 0 0 chr15 75499348 75499393 -25881128 - MIR SINE MIR -113 95 51 686 179 0 0 chr15 75499452 75499564 -25880957 - FLAM_C SINE Alu -24 119 8 2473 67 0 0 chr15 75499671 75499968 -25880553 - AluY SINE Alu -14 297 1 379 311 84 82 chr15 75501589 75502019 -25878502 - L2 LINE L2 -5 3267 2813 2288 82 108 6 chr15 75502019 75502360 -25878161 + MER51B LTR ERV1 1 376 -1 379 311 84 82 chr15 75502360 75502452 -25878069 - L2 LINE L2 -459 2813 2723 1556 155 65 25 chr15 75502568 75502845 -25877676 + AluJo SINE Alu 1 288 -24 369 325 52 31 chr15 75502885 75503132 -25877389 + MER115 DNA AcHobo 68 356 -337 35 78 0 0 chr15 75503138 75503215 -25877306 + AT_rich Low_complexity Low_complexity 1 77 0 418 255 19 19 chr15 75503846 75503952 -25876569 + MLT1H1 LTR MaLR 71 176 -379 291 291 8 26 chr15 75503998 75504115 -25876406 + MLT1-int LTR MaLR 1 90 -1281 407 323 21 5 chr15 75504159 75504345 -25876176 + MLT1-int LTR MaLR 348 536 -835 2491 60 0 0 chr15 75505387 75505685 -25874836 + AluY SINE Alu 1 298 -13 652 242 14 43 chr15 75506706 75506917 -25873604 + L1ME2 LINE L1 5958 6162 -2 709 281 14 31 chr15 75506928 75507220 -25873301 + L1ME LINE L1 5428 5714 -456 1501 197 3 41 chr15 75507614 75507895 -25872626 + AluJo SINE Alu 1 270 -42 1951 135 7 14 chr15 75507895 75508191 -25872330 - AluSx SINE Alu -6 306 13 1501 197 3 41 chr15 75508191 75508224 -25872297 + AluJo SINE Alu 270 303 -9 236 278 31 31 chr15 75508682 75508779 -25871742 - L1MC4a LINE L1 -979 6829 6733 604 294 76 49 chr15 75508788 75509220 -25871301 + L2 LINE L2 1605 2048 -1266 258 276 48 29 chr15 75509209 75509314 -25871207 - L2 LINE L2 -42 3271 3165 * 426 259 0 35 chr15 75509513 75509629 -25870892 + MIR SINE MIR 141 252 -10 3516 213 120 13 chr15 75509634 75509785 -25870736 + L1MB8 LINE L1 3936 4069 -2077 2044 141 0 7 chr15 75509785 75510083 -25870438 + AluJb SINE Alu 1 296 -16 3516 213 120 13 chr15 75510083 75511121 -25869400 + L1MB8 LINE L1 4069 5272 -874 241 192 39 13 chr15 75511121 75511131 -25869390 + (TA)n Simple_repeat Simple_repeat 1 9 -71 1252 207 13 8 chr15 75511131 75511368 -25869153 - MER8 DNA MER2_type -1 238 1 241 192 39 13 chr15 75511368 75511435 -25869086 + (TA)n Simple_repeat Simple_repeat 9 80 0 1703 168 57 13 chr15 75511483 75511871 -25868650 + L1MA5A LINE L1 4960 5364 -782 1252 164 22 9 chr15 75511872 75512097 -25868424 + AluJo SINE Alu 84 311 -1 4459 112 91 64 chr15 75512097 75512987 -25867534 + L1MA5A LINE L1 5384 6297 0 2261 154 20 35 chr15 75512995 75513448 -25867073 + L1MB8 LINE L1 5353 5798 -386 183 42 0 0 chr15 75513481 75513505 -25867016 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2116 118 0 0 chr15 75513505 75513785 -25866736 - AluSx SINE Alu -32 280 1 1780 223 61 17 chr15 75513787 75514284 -25866237 + MER76 LTR ERV 38 592 -96 1602 173 80 30 chr15 75514317 75514547 -25865974 + L1MB8 LINE L1 5789 6045 -133 2046 118 17 0 chr15 75514547 75514835 -25865686 + AluSx SINE Alu 1 293 -19 1602 173 80 30 chr15 75514835 75514969 -25865552 + L1MB8 LINE L1 6045 6171 -7 21 0 0 0 chr15 75515744 75515765 -25864756 + AT_rich Low_complexity Low_complexity 1 21 0 2193 117 0 7 chr15 75516085 75516393 -25864128 + AluSx SINE Alu 1 306 -6 900 285 111 14 chr15 75516741 75517085 -25863436 + MLT1I LTR MaLR 33 409 0 185 136 0 23 chr15 75517089 75517133 -25863388 + (TATAA)n Simple_repeat Simple_repeat 2 44 0 1917 132 6 32 chr15 75517177 75517488 -25863033 - AluJb SINE Alu -8 304 2 1989 95 4 4 chr15 75517504 75517767 -25862754 + AluSc SINE Alu 23 285 -24 324 143 130 65 chr15 75517845 75517922 -25862599 + L1MC2 LINE L1 6212 6293 -51 * 720 224 19 52 chr15 75517920 75518130 -25862391 + L1ME1 LINE L1 5912 6114 -52 184 284 90 30 chr15 75518433 75518500 -25862021 - L2 LINE L2 0 3313 3243 2144 105 3 10 chr15 75518862 75519158 -25861363 + AluSx SINE Alu 1 294 -18 631 250 139 0 chr15 75520119 75520299 -25860222 + MER58C DNA MER1_type 11 215 0 236 341 22 0 chr15 75520368 75520459 -25860062 - MIR3 SINE MIR -4 204 112 2236 110 3 3 chr15 75521378 75521686 -25858835 + AluSc SINE Alu 1 308 -1 297 75 0 0 chr15 75522137 75522177 -25858344 + (CCA)n Simple_repeat Simple_repeat 1 40 0 2039 137 13 0 chr15 75522234 75522540 -25857981 + AluSx SINE Alu 1 310 -2 2478 122 83 0 chr15 75523298 75523693 -25856828 + MSTA LTR MaLR 1 428 0 193 326 30 74 chr15 75523794 75523929 -25856592 + L2 LINE L2 2887 3015 -257 23 68 0 0 chr15 75525021 75525065 -25855456 + AT_rich Low_complexity Low_complexity 1 44 0 405 270 154 43 chr15 75525771 75526004 -25854517 - MIR SINE MIR -1 261 3 2348 38 0 14 chr15 75526342 75526691 -25853830 + AluY SINE Alu 1 345 0 1310 171 65 77 chr15 75527499 75527730 -25852791 - MER7A DNA MER2_type -2692 346 114 1777 172 10 7 chr15 75527730 75528027 -25852494 + AluJb SINE Alu 1 298 -14 1310 171 65 77 chr15 75528027 75528084 -25852437 - MER7A DNA MER2_type -2924 114 58 2166 99 3 55 chr15 75528084 75528396 -25852125 - AluSx SINE Alu -16 296 1 1310 171 65 77 chr15 75528396 75528458 -25852063 - MER7A DNA MER2_type -2980 58 1 195 42 0 0 chr15 75528815 75528839 -25851682 + (TA)n Simple_repeat Simple_repeat 1 24 0 1917 158 0 10 chr15 75531108 75531405 -25849116 - AluJb SINE Alu -18 294 1 220 365 43 9 chr15 75531739 75531854 -25848667 - L2 LINE L2 -563 2751 2633 987 204 0 0 chr15 75531895 75532062 -25848459 + FAM SINE Alu 1 167 -8 221 186 14 0 chr15 75532701 75532771 -25847750 + CT-rich Low_complexity Low_complexity 2 72 0 2087 134 0 10 chr15 75533646 75533952 -25846569 - AluSx SINE Alu -9 303 1 427 236 57 0 chr15 75535413 75535519 -25845002 + MER58 DNA MER1_type 173 284 -57 484 285 114 0 chr15 75536538 75536696 -25843825 + MIR SINE MIR 36 211 -51 389 277 20 0 chr15 75536801 75536908 -25843613 - MIR SINE MIR -97 111 2 375 181 164 26 chr15 75537261 75537377 -25843144 - MIR3 SINE MIR -2 206 75 27 0 0 0 chr15 75538374 75538401 -25842120 + AT_rich Low_complexity Low_complexity 1 27 0 1134 145 0 6 chr15 75538667 75538833 -25841688 + AluJb SINE Alu 131 295 -17 1822 159 31 3 chr15 75539587 75539877 -25840644 - AluJb SINE Alu -10 302 5 395 276 55 16 chr15 75539992 75540119 -25840402 + MIR SINE MIR 57 188 -74 464 198 90 18 chr15 75540606 75540717 -25839804 - MIR SINE MIR -27 235 117 702 259 99 13 chr15 75541261 75541493 -25839028 - MIR SINE MIR -10 252 1 392 231 102 0 chr15 75541927 75542035 -25838486 - L2 LINE L2 -3 3310 3192 270 0 0 0 chr15 75542103 75542133 -25838388 + (A)n Simple_repeat Simple_repeat 1 30 0 279 327 48 0 chr15 75542707 75542811 -25837710 + L2 LINE L2 3150 3258 -14 22713 138 24 34 chr15 75543338 75545499 -25835022 + L1MA3 LINE L1 12 2194 -5530 876 114 0 0 chr15 75545499 75545630 -25834891 + L1MA2 LINE L1 6172 6302 -2 22713 138 24 34 chr15 75545630 75546812 -25833709 + L1MA3 LINE L1 2194 3387 -4337 204 97 0 0 chr15 75546812 75546843 -25833678 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 22713 138 24 34 chr15 75546843 75548404 -25832117 + L1MA3 LINE L1 3387 4963 -2761 2420 77 0 16 chr15 75548404 75548717 -25831804 + AluSp SINE Alu 1 308 -5 22713 138 24 34 chr15 75548717 75551257 -25829264 + L1MA3 LINE L1 4963 7384 -340 1626 146 8 0 chr15 75552543 75552790 -25827731 + AluSx SINE Alu 1 249 -63 23 68 0 0 chr15 75553104 75553148 -25827373 + AT_rich Low_complexity Low_complexity 1 44 0 208 368 44 0 chr15 75554212 75554280 -25826241 - L2 LINE L2 -16 3297 3227 718 145 15 23 chr15 75554524 75554655 -25825866 - L1PA15 LINE L1 -6 6159 6030 1452 138 71 3 chr15 75554967 75555249 -25825272 + MER33 DNA MER1_type 24 324 0 2343 80 3 3 chr15 75555631 75555930 -25824591 - AluSc SINE Alu -10 299 1 343 254 112 12 chr15 75555936 75556105 -25824416 + L1ME4a LINE L1 5932 6117 -4 34 0 0 0 chr15 75556413 75556447 -25824074 + AT_rich Low_complexity Low_complexity 1 34 0 5509 159 30 5 chr15 75556897 75558520 -25822001 + L1P5 LINE L1 4131 5791 -360 509 207 16 0 chr15 75558520 75558641 -25821880 + (CATATA)n Simple_repeat Simple_repeat 3 125 0 205 239 0 0 chr15 75560640 75560686 -25819835 + C-rich Low_complexity Low_complexity 1 46 0 313 322 73 96 chr15 75560799 75561113 -25819408 - L2 LINE L2 -3 3269 2963 1001 123 82 126 chr15 75561120 75561437 -25819084 - MER33 DNA MER1_type 0 324 22 325 362 85 24 chr15 75561471 75561717 -25818804 - L2 LINE L2 -483 2831 2571 222 276 110 39 chr15 75562321 75562448 -25818073 - L2 LINE L2 -1726 1588 1453 783 179 0 0 chr15 75562555 75562678 -25817843 + FLAM_A SINE Alu 1 123 -10 272 248 107 73 chr15 75562781 75562987 -25817534 - L2 LINE L2 -1925 1389 1177 195 208 21 0 chr15 75563012 75563060 -25817461 - MIR SINE MIR -68 194 146 427 278 100 52 chr15 75563332 75563562 -25816959 - MIR SINE MIR 0 262 22 1872 143 25 38 chr15 75563601 75563987 -25816534 + AluJb SINE Alu 1 382 0 1775 187 7 3 chr15 75563992 75564292 -25816229 + AluJo SINE Alu 1 301 -11 3250 163 178 115 chr15 75564298 75564766 -25815755 - L1MD3 LINE L1 -73 7922 7485 674 200 8 0 chr15 75564766 75564896 -25815625 - MLT1F1 LTR MaLR -436 131 1 3250 163 178 115 chr15 75564896 75565584 -25814937 - L1MD3 LINE L1 -510 7485 6531 1576 194 133 34 chr15 75565584 75565997 -25814524 - L2 LINE L2 -772 2542 2089 1601 166 27 47 chr15 75566203 75566499 -25814022 + AluJo SINE Alu 1 290 -22 233 231 58 0 chr15 75567445 75567497 -25813024 + L2 LINE L2 3257 3311 -2 1910 75 3 156 chr15 75567693 75568039 -25812482 + AluSp SINE Alu 4 296 -17 777 250 55 10 chr15 75568121 75568321 -25812200 + MIR SINE MIR 13 221 -41 217 286 0 18 chr15 75568533 75568589 -25811932 - L2 LINE L2 -1 3312 3258 775 264 134 0 chr15 75568620 75568821 -25811700 + MIR SINE MIR 8 235 -27 1823 162 13 13 chr15 75569022 75569325 -25811196 - AluJb SINE Alu -9 303 1 2363 82 31 11 chr15 75569575 75569927 -25810594 - L1PB1 LINE L1 -2 6149 5791 294 29 0 0 chr15 75569927 75569962 -25810559 + (TG)n Simple_repeat Simple_repeat 1 35 0 330 264 23 0 chr15 75569962 75570049 -25810472 + L1MC4 LINE L1 6615 6703 -1339 304 307 23 0 chr15 75570041 75570129 -25810392 - L1MC4 LINE L1 -1339 6703 6614 * 180 219 0 0 chr15 75570130 75570171 -25810350 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 515 122 131 20 chr15 75570210 75570329 -25810192 - L1P5 LINE L1 -360 5791 5662 324 286 132 105 chr15 75570585 75571443 -25809078 + L1M2 LINE L1 526 1406 -5443 2314 60 7 0 chr15 75573496 75573779 -25806742 + AluSg SINE Alu 17 301 -9 315 276 78 17 chr15 75575089 75575205 -25805316 - L2 LINE L2 -1 3312 3190 307 208 42 28 chr15 75575547 75575619 -25804902 + MIR SINE MIR 73 145 -117 249 336 81 50 chr15 75576143 75576500 -25804021 + L2 LINE L2 2936 3303 -10 231 304 76 0 chr15 75576541 75576620 -25803901 + L2 LINE L2 3188 3272 0 2092 155 89 52 chr15 75576914 75577364 -25803157 + L1MB7 LINE L1 5630 6103 -81 2607 125 20 34 chr15 75577364 75577804 -25802717 - Tigger2a DNA MER2_type 0 434 1 2092 155 89 52 chr15 75577804 75577869 -25802652 + L1MB7 LINE L1 6103 6164 -20 243 128 64 21 chr15 75578417 75578464 -25802057 - L2 LINE L2 -4 3309 3261 260 326 82 20 chr15 75578507 75578654 -25801867 - L1MC4 LINE L1 -2159 5649 5494 457 328 0 0 chr15 75579011 75579133 -25801388 - MIR SINE MIR -122 140 19 1762 165 28 7 chr15 75579831 75580122 -25800399 + AluJo SINE Alu 1 297 -15 22 35 0 0 chr15 75580173 75580202 -25800319 + AT_rich Low_complexity Low_complexity 1 29 0 754 203 0 0 chr15 75580205 75580328 -25800193 + FLAM_C SINE Alu 1 123 -20 21 0 0 0 chr15 75580329 75580350 -25800171 + AT_rich Low_complexity Low_complexity 1 21 0 719 114 197 0 chr15 75580356 75580488 -25800033 - AluYa5 SINE Alu -6 305 148 319 290 47 31 chr15 75580708 75580901 -25799620 + L1ME LINE L1 5602 5797 -324 213 204 19 19 chr15 75581060 75581114 -25799407 - MIR SINE MIR 0 262 209 328 249 56 122 chr15 75581294 75581491 -25799030 - MIR SINE MIR -44 218 35 410 174 12 0 chr15 75581903 75581989 -25798532 + MLT1D LTR MaLR 419 505 0 377 310 109 5 chr15 75581989 75582302 -25798219 + L1ME3A LINE L1 1085 1472 -4838 2233 114 0 28 chr15 75582306 75582340 -25798181 - AluSx SINE Alu -4 308 275 224 29 0 29 chr15 75582340 75582374 -25798147 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2233 114 0 28 chr15 75582374 75582656 -25797865 - AluSx SINE Alu -37 275 1 3702 118 48 6 chr15 75582667 75583292 -25797229 - L1MA8 LINE L1 -3 6288 5638 1661 246 79 30 chr15 75583336 75583584 -25796937 + L1ME3A LINE L1 2884 3119 -3010 2460 90 0 0 chr15 75583584 75583895 -25796626 + AluSq SINE Alu 1 311 -2 1661 246 79 30 chr15 75583895 75584231 -25796290 + L1ME3A LINE L1 3119 3518 -2611 1473 178 120 7 chr15 75584231 75584506 -25796015 + AluJo SINE Alu 1 306 -6 1661 246 79 30 chr15 75584506 75584709 -25795812 + L1ME3A LINE L1 3518 3710 -2419 1744 212 117 64 chr15 75584776 75586141 -25794380 + L1ME3A LINE L1 4319 5759 -394 617 202 129 62 chr15 75586154 75586426 -25794095 + L1ME3A LINE L1 5828 6117 -36 1940 107 10 34 chr15 75586440 75586738 -25793783 - AluSx SINE Alu -21 291 1 1604 292 132 54 chr15 75586852 75587593 -25792928 + L2 LINE L2 1860 2542 -771 1963 162 3 7 chr15 75587593 75587902 -25792619 - AluSx SINE Alu -4 308 1 1604 292 132 54 chr15 75587902 75588497 -25792024 + L2 LINE L2 2542 3313 0 2293 96 0 7 chr15 75588717 75589018 -25791503 - AluSq SINE Alu -14 299 1 1762 139 9 69 chr15 75589106 75589423 -25791098 - AluJo SINE Alu -14 298 1 2293 61 10 10 chr15 75589940 75590235 -25790286 - AluY SINE Alu -16 295 1 204 274 0 16 chr15 75590235 75590297 -25790224 + L3 LINE CR1 1351 1411 -166 2080 242 90 18 chr15 75590569 75591541 -25788980 - L1ME3 LINE L1 -21 6141 5061 658 261 114 59 chr15 75591736 75592123 -25788398 - MLT1I LTR MaLR -1 408 1 675 205 33 7 chr15 75592133 75592284 -25788237 + MIR SINE MIR 95 249 -13 619 288 52 14 chr15 75592313 75592525 -25787996 - MIR SINE MIR -15 247 28 312 313 70 9 chr15 75592784 75592899 -25787622 - MIR SINE MIR -71 137 16 270 157 0 0 chr15 75593969 75594020 -25786501 - AluSx SINE Alu -4 304 254 22 0 0 0 chr15 75594142 75594164 -25786357 + AT_rich Low_complexity Low_complexity 1 22 0 280 167 31 115 chr15 75594255 75594297 -25786224 - L1ME4a LINE L1 -84 6037 6006 1978 116 0 0 chr15 75594297 75594564 -25785957 - AluSx SINE Alu -7 305 39 280 167 31 115 chr15 75594564 75594617 -25785904 - L1ME4a LINE L1 -115 6006 5950 243 0 0 0 chr15 75594622 75594649 -25785872 + (ATG)n Simple_repeat Simple_repeat 1 27 0 279 0 0 0 chr15 75594649 75594680 -25785841 + (TTA)n Simple_repeat Simple_repeat 1 31 0 1779 113 0 0 chr15 75594685 75594923 -25785598 - AluSx SINE Alu -36 276 39 300 161 0 18 chr15 75594924 75594980 -25785541 - L1ME4a LINE L1 -117 6004 5950 1779 161 0 18 chr15 75594995 75595280 -25785241 - AluJb SINE Alu -32 280 1 309 234 0 39 chr15 75595408 75595485 -25785036 - MIR SINE MIR -73 189 116 489 161 11 11 chr15 75596674 75596761 -25783760 - Tigger7 DNA MER2_type 0 2491 2405 2675 163 63 6 chr15 75596768 75597260 -25783261 - Tigger7 DNA MER2_type -213 520 1 217 352 0 88 chr15 75597565 75597656 -25782865 + L2 LINE L2 3143 3225 -47 2581 54 0 0 chr15 75597795 75598092 -25782429 + AluY SINE Alu 1 297 -14 1253 253 216 21 chr15 75599329 75600011 -25780510 + L2 LINE L2 2517 3313 0 1590 110 129 0 chr15 75600071 75600334 -25780187 + AluSg SINE Alu 1 297 -3 27 49 0 0 chr15 75600854 75600895 -25779626 + AT_rich Low_complexity Low_complexity 1 41 0 2004 137 79 13 chr15 75600918 75601297 -25779224 - L1MC1 LINE L1 -14 6319 5916 432 125 0 0 chr15 75601314 75601378 -25779143 - Tigger4(Zombi) DNA MER2_type -2 2729 2666 1320 62 0 6 chr15 75601378 75601579 -25778942 - AluY SINE Alu 0 320 121 2461 117 50 7 chr15 75601579 75601999 -25778522 - Tigger4(Zombi) DNA MER2_type -72 2659 2222 288 278 0 0 chr15 75601996 75602068 -25778453 - Tigger4(Zombi) DNA MER2_type -2570 161 90 * 641 144 42 0 chr15 75602071 75602189 -25778332 - L1MC/D LINE L1 -778 5555 5433 496 179 21 0 chr15 75602189 75602284 -25778237 - Tigger4(Zombi) DNA MER2_type -2630 101 5 2871 128 23 10 chr15 75602286 75602770 -25777751 - L1MC1 LINE L1 -427 5906 5417 275 270 0 0 chr15 75602772 75602835 -25777686 - MER2 DNA MER2_type -1 344 282 * 414 233 22 0 chr15 75602823 75602913 -25777608 - MER8 DNA MER2_type -73 166 75 286 293 23 40 chr15 75602927 75603101 -25777420 - L2 LINE L2 -108 3205 3035 272 398 29 65 chr15 75603484 75603868 -25776653 - L2 LINE L2 0 3272 2903 4261 153 18 58 chr15 75603869 75604214 -25776307 + L1MB7 LINE L1 4989 5346 -988 1911 158 0 14 chr15 75604214 75604505 -25776016 + AluSx SINE Alu 1 287 -25 4261 153 18 58 chr15 75604505 75605161 -25775360 + L1MB7 LINE L1 5346 6097 -237 1662 147 58 34 chr15 75605161 75605454 -25775067 + AluJo SINE Alu 4 303 -9 4261 153 18 58 chr15 75605454 75605678 -25774843 + L1MB7 LINE L1 6097 6328 -6 237 232 304 30 chr15 75605960 75606128 -25774393 - L2 LINE L2 -2236 1078 865 1597 118 180 0 chr15 75607670 75607925 -25772596 + AluSx SINE Alu 3 303 -9 319 274 26 26 chr15 75609237 75609354 -25771167 - MIR SINE MIR -74 188 72 1203 296 56 30 chr15 75610568 75611034 -25769487 - L2 LINE L2 -4 3309 2832 456 235 61 0 chr15 75611077 75611175 -25769346 - MER5A DNA MER1_type -77 112 9 * 3991 225 55 88 chr15 75611173 75611972 -25768549 - L2 LINE L2 -485 2829 2092 2314 109 3 3 chr15 75611972 75612276 -25768245 + AluSx SINE Alu 1 304 -8 3991 225 55 88 chr15 75612276 75612852 -25767669 - L2 LINE L2 -1222 2092 1499 444 332 133 19 chr15 75613355 75613869 -25766652 + L2 LINE L2 1804 2418 -896 207 0 0 0 chr15 75613869 75613892 -25766629 + (CA)n Simple_repeat Simple_repeat 1 23 0 444 332 133 19 chr15 75613892 75614016 -25766505 + L2 LINE L2 2418 2527 -787 2293 122 3 0 chr15 75614030 75614341 -25766180 - AluSx SINE Alu 0 312 1 189 200 0 0 chr15 75615886 75615926 -25764595 + L2 LINE L2 3274 3313 0 2353 99 3 6 chr15 75616247 75616559 -25763962 + AluSx SINE Alu 1 311 -1 2016 152 3 0 chr15 75616663 75616959 -25763562 - AluSx SINE Alu -10 302 6 2300 105 0 7 chr15 75617368 75617672 -25762849 + AluSp SINE Alu 1 302 -11 240 147 11 84 chr15 75618267 75618362 -25762159 + T-rich Low_complexity Low_complexity 5 92 0 21 36 0 0 chr15 75619509 75619537 -25760984 + AT_rich Low_complexity Low_complexity 1 28 0 1687 228 83 111 chr15 75619667 75619838 -25760683 - L1MC4 LINE L1 -2 8040 7866 222 37 0 0 chr15 75619838 75619865 -25760656 + (TC)n Simple_repeat Simple_repeat 2 28 0 261 0 0 0 chr15 75619867 75619896 -25760625 + (CA)n Simple_repeat Simple_repeat 1 29 0 1687 228 83 111 chr15 75619896 75620679 -25759842 - L1MC4 LINE L1 -177 7865 7109 1065 203 57 13 chr15 75620679 75620906 -25759615 - AluJo SINE Alu -75 237 1 2093 137 0 0 chr15 75620917 75621237 -25759284 - AluSx SINE Alu 0 320 1 366 242 0 10 chr15 75621319 75621418 -25759103 - L1MC4 LINE L1 -1000 7042 6945 21 0 0 0 chr15 75622116 75622137 -25758384 + AT_rich Low_complexity Low_complexity 1 21 0 2416 90 0 6 chr15 75623531 75623842 -25756679 - AluSc SINE Alu 0 309 1 280 274 0 108 chr15 75625604 75625761 -25754760 - MIR3 SINE MIR -38 170 31 2379 93 0 10 chr15 75627468 75627781 -25752740 + AluSx SINE Alu 1 310 -2 594 115 146 0 chr15 75630768 75630864 -25749657 + FLAM_A SINE Alu 22 131 -11 183 309 143 0 chr15 75630897 75630981 -25749540 + MIR SINE MIR 2 97 -165 1698 171 6 41 chr15 75631279 75631595 -25748926 + AluJb SINE Alu 1 305 -7 1775 173 13 7 chr15 75631604 75631905 -25748616 + AluJo SINE Alu 5 307 -5 267 288 18 36 chr15 75633285 75633396 -25747125 - MIR SINE MIR -65 143 35 190 0 67 0 chr15 75634195 75634225 -25746296 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 248 0 31 0 chr15 75635378 75635410 -25745111 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 637 159 35 18 chr15 75635412 75635525 -25744996 - FAM SINE Alu -29 156 42 225 0 0 0 chr15 75635591 75635616 -25744905 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 2505 79 0 0 chr15 75636920 75637224 -25743297 + AluSc SINE Alu 1 304 -5 2474 70 7 0 chr15 75637528 75637827 -25742694 - AluSq SINE Alu -12 301 1 245 286 19 29 chr15 75637909 75638014 -25742507 + MIR SINE MIR 33 136 -72 899 264 149 58 chr15 75638146 75638597 -25741924 - MLT1J LTR MaLR -4 507 16 235 368 28 28 chr15 75639584 75639690 -25740831 - L2 LINE L2 -62 3210 3105 505 248 131 15 chr15 75639973 75640171 -25740350 - MER112 DNA MER1_type -10 250 30 614 280 35 39 chr15 75640206 75640438 -25740083 + MIR SINE MIR 31 261 -1 289 316 83 26 chr15 75640477 75640670 -25739851 - MIR SINE MIR -31 231 28 1042 276 105 32 chr15 75640922 75641262 -25739259 - L2 LINE L2 -248 3065 2654 2107 125 0 37 chr15 75641262 75641583 -25738938 + AluSx SINE Alu 1 309 -3 1042 276 105 32 chr15 75641583 75641810 -25738711 - L2 LINE L2 -659 2654 2445 889 138 0 0 chr15 75641811 75641934 -25738587 + AluJb SINE Alu 3 125 -187 215 312 43 29 chr15 75641940 75642078 -25738443 - L2 LINE L2 -849 2465 2326 2080 176 59 2 chr15 75643281 75643706 -25736815 - Charlie4a DNA MER1_type -7 501 53 1393 182 91 21 chr15 75643818 75644104 -25736417 + AluJb SINE Alu 1 306 -6 513 318 147 24 chr15 75644347 75645249 -25735272 - L2 LINE L2 -56 3257 2244 1930 172 3 0 chr15 75645401 75645698 -25734823 - AluJo SINE Alu -14 298 1 2241 123 0 3 chr15 75646535 75646843 -25733678 + AluSx SINE Alu 4 310 -2 252 0 0 0 chr15 75648921 75648949 -25731572 + (GA)n Simple_repeat Simple_repeat 2 29 0 252 0 0 0 chr15 75648948 75648976 -25731545 + (TG)n Simple_repeat Simple_repeat 2 29 0 25 0 0 0 chr15 75649096 75649121 -25731400 + AT_rich Low_complexity Low_complexity 1 25 0 228 282 63 26 chr15 75649845 75649976 -25730545 + MIR SINE MIR 34 167 -62 403 154 22 22 chr15 75650186 75650277 -25730244 - L1MC4 LINE L1 -873 7169 7079 2373 98 0 3 chr15 75651089 75651396 -25729125 - AluSx SINE Alu -6 306 1 305 298 68 31 chr15 75651445 75651606 -25728915 - MIR SINE MIR -74 188 22 2349 91 0 26 chr15 75651826 75652134 -25728387 - AluSq SINE Alu -13 300 1 292 235 12 25 chr15 75652367 75652448 -25728073 + L2 LINE L2 3185 3264 -8 374 317 182 6 chr15 75652542 75653037 -25727484 + L2 LINE L2 1839 2420 -894 1578 203 36 3 chr15 75653255 75653585 -25726936 + MER58B DNA MER1_type 1 341 0 268 329 77 28 chr15 75653808 75653951 -25726570 + L2 LINE L2 3114 3263 -9 1898 161 10 6 chr15 75653951 75654262 -25726259 + AluJo SINE Alu 1 312 0 192 242 11 159 chr15 75654511 75654693 -25725828 + MIR3 SINE MIR 49 203 -5 245 323 40 0 chr15 75654817 75654916 -25725605 - MIR SINE MIR -70 192 90 455 252 192 0 chr15 75654992 75655143 -25725378 - MER5A DNA MER1_type 0 189 10 230 118 0 0 chr15 75655151 75655185 -25725336 + MER91 DNA MER1_type 103 136 -4 265 288 0 12 chr15 75655189 75655269 -25725252 - MIR3 SINE MIR -120 88 10 530 123 344 0 chr15 75657349 75657471 -25723050 + MER53 DNA DNA 25 188 -1 1026 210 82 66 chr15 75658210 75658529 -25721992 + MLT2D LTR ERVL 91 414 0 333 277 39 39 chr15 75658683 75658838 -25721683 - LTR16C LTR ERVL 0 491 337 395 321 48 17 chr15 75659613 75659819 -25720702 - MIR SINE MIR -19 243 34 206 307 13 0 chr15 75660218 75660293 -25720228 - L2 LINE L2 -1 3312 3237 204 40 0 0 chr15 75660466 75660491 -25720030 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 1784 177 17 7 chr15 75660499 75660798 -25719723 - AluJb SINE Alu -10 302 1 468 0 0 0 chr15 75660798 75660850 -25719671 + (TG)n Simple_repeat Simple_repeat 2 53 0 2266 98 3 3 chr15 75660866 75661163 -25719358 + AluSx SINE Alu 1 297 -15 240 182 23 0 chr15 75661166 75661210 -25719311 + MER69 DNA AcHobo 2479 2523 -3 2005 221 84 4 chr15 75662318 75662780 -25717741 + L1MC4 LINE L1 6450 6948 -1094 5449 133 44 3 chr15 75662780 75663673 -25716848 + L1MB3 LINE L1 5255 6183 0 2402 213 121 31 chr15 75663696 75664448 -25716073 + L1MC4 LINE L1 6935 7754 -288 1384 229 86 20 chr15 75664580 75664697 -25715824 + L1ME3A LINE L1 5612 5720 -450 1601 165 69 111 chr15 75664697 75664975 -25715546 - MLT1B LTR MaLR 0 390 133 2261 86 7 0 chr15 75664975 75665266 -25715255 - AluSc SINE Alu -16 293 1 1601 165 69 111 chr15 75665266 75665394 -25715127 - MLT1B LTR MaLR -257 133 1 1384 229 86 20 chr15 75665394 75665683 -25714838 + L1ME3A LINE L1 5720 6045 -125 337 263 11 11 chr15 75665681 75665786 -25714735 + L1ME3 LINE L1 6060 6164 0 * 560 324 93 32 chr15 75665799 75666357 -25714164 - L2 LINE L2 -400 2914 2323 449 248 80 93 chr15 75666400 75666626 -25713895 - MER102a DNA MER1_type -13 317 95 189 0 0 0 chr15 75666652 75666673 -25713848 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 902 134 0 7 chr15 75666690 75666832 -25713689 - AluJb SINE Alu -171 141 1 24 0 0 0 chr15 75666844 75666868 -25713653 + AT_rich Low_complexity Low_complexity 1 24 0 943 201 0 6 chr15 75667571 75667735 -25712786 + FRAM SINE Alu 1 163 -3 277 268 128 34 chr15 75667906 75668085 -25712436 - L2 LINE L2 -190 3082 2887 361 277 0 0 chr15 75668545 75668628 -25711893 + L2 LINE L2 3187 3269 -3 363 331 106 0 chr15 75669099 75669259 -25711262 + MIR SINE MIR 72 248 -14 2012 206 11 8 chr15 75670648 75671008 -25709513 + MLT1A1 LTR MaLR 1 361 -4 721 213 101 71 chr15 75671124 75671161 -25709360 + L1ME3A LINE L1 5408 5442 -720 2251 80 0 0 chr15 75671161 75671447 -25709074 + AluY SINE Alu 1 286 -25 351 0 0 0 chr15 75671451 75671490 -25709031 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 721 213 101 71 chr15 75671490 75671785 -25708736 + L1ME3A LINE L1 5444 5755 -407 321 293 45 16 chr15 75673111 75673251 -25707270 - MIR SINE MIR -71 137 42 1689 107 8 4 chr15 75673856 75674098 -25706423 + AluSc SINE Alu 59 301 -8 1017 232 105 25 chr15 75674104 75674457 -25706064 + L1ME3A LINE L1 5782 6162 -8 3811 220 129 32 chr15 75674468 75674643 -25705878 + L1MC4a LINE L1 5815 5972 -1836 229 26 53 0 chr15 75674643 75674681 -25705840 + (TTATA)n Simple_repeat Simple_repeat 1 40 0 3811 220 129 32 chr15 75674681 75675784 -25704737 + L1MC4a LINE L1 5972 7217 -591 896 145 0 78 chr15 75675784 75675963 -25704558 - FRAM SINE Alu -15 161 1 321 145 14 48 chr15 75675963 75676108 -25704413 + (TA)n Simple_repeat Simple_repeat 2 141 0 2724 3 0 19 chr15 75676262 75676579 -25703942 - AluYa5 SINE Alu 0 311 1 1369 203 0 14 chr15 75677110 75677430 -25703091 + AluJo SINE Alu 24 339 0 204 245 59 69 chr15 75677606 75677708 -25702813 - MIR SINE MIR -74 134 34 2535 155 118 1 chr15 75678696 75679954 -25700567 + SATR1 Satellite Satellite 1 1405 -132 845 236 102 0 chr15 75680120 75680336 -25700185 - MLT1H LTR MaLR -307 242 5 979 245 9 9 chr15 75680724 75680957 -25699564 - L1M4 LINE L1 -1117 5029 4797 573 235 235 0 chr15 75680957 75681102 -25699419 + MLT1H LTR MaLR 251 361 -188 288 0 0 0 chr15 75681102 75681134 -25699387 + (CAGCC)n Simple_repeat Simple_repeat 1 32 0 573 235 235 0 chr15 75681134 75681205 -25699316 + MLT1H LTR MaLR 361 518 -31 358 330 96 42 chr15 75681249 75681582 -25698939 + L1ME4a LINE L1 5727 6077 -44 245 244 47 23 chr15 75681827 75681913 -25698608 - MIR3 SINE MIR -17 191 104 381 75 0 0 chr15 75682918 75682971 -25697550 + (CA)n Simple_repeat Simple_repeat 2 54 0 457 234 97 0 chr15 75682973 75683118 -25697403 - MER103 DNA DNA -1 165 7 878 263 88 64 chr15 75683143 75683599 -25696922 - MLT1J LTR MaLR -6 505 39 2269 106 0 0 chr15 75683603 75683914 -25696607 + AluY SINE Alu 1 311 0 1400 39 11 0 chr15 75683915 75683983 -25696538 + (GAAA)n Simple_repeat Simple_repeat 1 248 0 1400 39 11 0 chr15 75683983 75684161 -25696360 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 323 269 23 54 chr15 75684252 75684382 -25696139 + MIR SINE MIR 34 159 -103 2128 110 0 7 chr15 75684445 75684745 -25695776 - AluSx SINE Alu -14 298 1 182 265 0 0 chr15 75684810 75684859 -25695662 - MIR SINE MIR -62 146 98 1517 298 70 25 chr15 75685590 75686147 -25694374 + MLT1K LTR MaLR 3 584 -4 309 297 81 0 chr15 75686154 75686265 -25694256 - L3 LINE CR1 -925 652 533 239 234 64 64 chr15 75687022 75687116 -25693405 - MIR3 SINE MIR -21 187 94 415 343 81 19 chr15 75687554 75687781 -25692740 - MIR SINE MIR -14 248 15 180 0 0 0 chr15 75688167 75688187 -25692334 + (GA)n Simple_repeat Simple_repeat 1 20 0 281 266 120 0 chr15 75688890 75689072 -25691449 + MIR SINE MIR 43 251 -11 337 233 12 0 chr15 75689505 75689591 -25690930 + L1MC/D LINE L1 5688 5774 -2034 1946 92 4 0 chr15 75689629 75689889 -25690632 + AluSp SINE Alu 1 261 -52 1612 121 117 4 chr15 75690064 75690337 -25690184 - AluSx SINE Alu -8 304 1 242 328 62 28 chr15 75691113 75691290 -25689231 - MIR3 SINE MIR -25 183 1 22 0 0 0 chr15 75691778 75691800 -25688721 + AT_rich Low_complexity Low_complexity 1 22 0 180 246 77 15 chr15 75691938 75692003 -25688518 + L2 LINE L2 3109 3177 -95 409 271 169 35 chr15 75693957 75694300 -25686221 + L2 LINE L2 2373 2761 -553 373 263 165 59 chr15 75694337 75694725 -25685796 + L2 LINE L2 2869 3297 -16 243 88 0 0 chr15 75694725 75694759 -25685762 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 243 327 58 10 chr15 75695703 75695807 -25684714 + MIR3 SINE MIR 93 201 -7 204 286 0 16 chr15 75695959 75696022 -25684499 + GA-rich Low_complexity Low_complexity 3 64 0 367 251 216 18 chr15 75696585 75696752 -25683769 - L2 LINE L2 -57 3215 3016 813 175 153 0 chr15 75696756 75696933 -25683588 - MER3 DNA MER1_type -5 204 1 272 206 48 0 chr15 75697885 75697948 -25682573 + MLT1G LTR MaLR 4 69 -526 1960 252 32 101 chr15 75697988 75698049 -25682472 + MLT1G LTR MaLR 27 91 -499 2427 50 0 7 chr15 75698049 75698350 -25682171 + AluY SINE Alu 1 299 -12 1960 252 32 101 chr15 75698350 75698843 -25681678 + MLT1G LTR MaLR 91 578 -12 191 146 24 0 chr15 75699952 75699993 -25680528 + CT-rich Low_complexity Low_complexity 4 45 0 1999 138 0 0 chr15 75700450 75700746 -25679775 - AluSx SINE Alu -16 296 1 257 262 0 24 chr15 75700804 75700888 -25679633 - MIR SINE MIR -63 145 64 253 296 0 62 chr15 75701583 75701745 -25678776 + GA-rich Low_complexity Low_complexity 1 152 0 564 108 23 40 chr15 75703217 75703393 -25677128 + (TG)n Simple_repeat Simple_repeat 1 173 0 586 78 16 83 chr15 75703435 75703628 -25676893 + (TG)n Simple_repeat Simple_repeat 1 180 0 887 236 75 5 chr15 75704704 75704916 -25675605 - MIR SINE MIR -34 228 2 665 265 138 0 chr15 75704927 75705153 -25675368 - MIR SINE MIR -2 260 3 280 284 15 3 chr15 75705153 75705259 -25675262 + MIR SINE MIR 49 156 -52 261 241 0 0 chr15 75705382 75705440 -25675081 - MIR SINE MIR -118 144 87 300 213 110 39 chr15 75705480 75705607 -25674914 - MIR3 SINE MIR -61 147 12 420 311 124 19 chr15 75705983 75706298 -25674223 + L3 LINE CR1 1216 1563 -14 1307 311 36 11 chr15 75707042 75707569 -25672952 + L1ME3A LINE L1 5416 5955 -215 22 35 0 0 chr15 75707570 75707599 -25672922 + AT_rich Low_complexity Low_complexity 1 29 0 187 170 43 43 chr15 75707896 75707943 -25672578 + MIR SINE MIR 96 142 -66 1183 248 16 0 chr15 75708006 75708256 -25672265 - MIR SINE MIR -3 259 6 270 136 0 0 chr15 75708336 75708380 -25672141 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 209 231 0 44 chr15 75711546 75711637 -25668884 + G-rich Low_complexity Low_complexity 6 92 0 45 79 0 0 chr15 75711682 75711783 -25668738 + GC_rich Low_complexity Low_complexity 1 101 0 229 250 15 0 chr15 75711866 75711934 -25668587 + C-rich Low_complexity Low_complexity 4 72 0 211 109 31 78 chr15 75711959 75712023 -25668498 + GA-rich Low_complexity Low_complexity 1 61 0 2182 174 28 113 chr15 75712524 75712642 -25667879 + L1MC4 LINE L1 6241 5727 -632 2023 105 0 33 chr15 75712642 75712948 -25667573 - AluY SINE Alu -15 296 1 2182 174 28 113 chr15 75712948 75713533 -25666988 + L1MC4 LINE L1 5726 6359 0 1617 221 62 39 chr15 75713548 75714015 -25666506 - L1ME2 LINE L1 -16 6148 5671 358 249 13 0 chr15 75715082 75715176 -25665345 - MIR SINE MIR -84 124 28 302 347 73 0 chr15 75716253 75716403 -25664118 - MIR3 SINE MIR -28 180 20 435 242 94 0 chr15 75716885 75717013 -25663508 - MIR3 SINE MIR -39 169 30 200 388 82 0 chr15 75717327 75717412 -25663109 + MIR SINE MIR 21 112 -150 536 303 72 7 chr15 75718451 75718646 -25661875 - MIR SINE MIR -23 239 37 1222 273 35 56 chr15 75719347 75719575 -25660946 + L2 LINE L2 2807 3038 -275 2147 95 0 50 chr15 75719575 75719892 -25660629 - AluSg SINE Alu -9 301 1 1222 273 35 56 chr15 75719892 75720179 -25660342 + L2 LINE L2 3038 3311 -2 432 243 9 18 chr15 75720241 75720352 -25660169 + MIR SINE MIR 21 130 -78 269 242 21 84 chr15 75720468 75720563 -25659958 + MIR SINE MIR 61 149 -113 377 274 113 0 chr15 75721614 75721738 -25658783 - MIR SINE MIR -109 153 16 315 309 24 0 chr15 75721896 75722019 -25658502 - MIR SINE MIR 0 262 137 331 210 20 0 chr15 75722825 75722925 -25657596 + CT-rich Low_complexity Low_complexity 1 102 0 22 35 0 0 chr15 75723217 75723246 -25657275 + AT_rich Low_complexity Low_complexity 1 29 0 351 154 0 0 chr15 75723454 75723519 -25657002 + Charlie5 DNA MER1_type 2560 2624 0 608 224 85 55 chr15 75723527 75723606 -25656915 + MER58C DNA MER1_type 1 76 -2344 1872 174 0 3 chr15 75723606 75723905 -25656616 - AluJo SINE Alu -14 298 1 608 224 85 55 chr15 75723905 75724026 -25656495 + MER58C DNA MER1_type 76 207 -8 338 296 0 80 chr15 75724027 75724152 -25656369 + L2 LINE L2 3183 3297 -16 288 0 0 0 chr15 75724153 75724185 -25656336 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 2150 125 3 0 chr15 75724908 75725219 -25655302 + AluSx SINE Alu 1 312 0 253 184 20 0 chr15 75725386 75725435 -25655086 + MIR SINE MIR 94 143 -65 330 261 138 14 chr15 75725876 75726014 -25654507 - MIR SINE MIR -89 173 19 217 259 12 49 chr15 75726548 75726629 -25653892 + CT-rich Low_complexity Low_complexity 4 81 0 321 274 39 0 chr15 75727829 75727931 -25652590 - MIR SINE MIR -85 123 18 236 187 120 0 chr15 75728542 75728617 -25651904 - MIR3 SINE MIR -52 156 73 475 262 28 0 chr15 75728886 75728993 -25651528 - MER81 DNA DNA -1 113 4 243 307 40 0 chr15 75728994 75729069 -25651452 - L2 LINE L2 -264 3049 2972 357 291 29 0 chr15 75729521 75729624 -25650897 + L2 LINE L2 2970 3075 -197 332 252 33 64 chr15 75729729 75729891 -25650630 - MIR SINE MIR -34 174 14 204 135 0 0 chr15 75730080 75730117 -25650404 + (GGGTG)n Simple_repeat Simple_repeat 3 39 0 286 264 0 99 chr15 75730333 75730454 -25650067 + MIR SINE MIR 94 202 -60 244 268 0 0 chr15 75730907 75730963 -25649558 + MIR SINE MIR 169 224 -38 186 261 0 43 chr15 75731511 75731580 -25648941 + L3b LINE CR1 1331 1396 -187 195 245 61 0 chr15 75731727 75731776 -25648745 + MIR SINE MIR 109 160 -102 233 308 11 44 chr15 75732050 75732141 -25648380 + MIR3 SINE MIR 94 181 -27 203 295 13 39 chr15 75733312 75733390 -25647131 - L3b LINE CR1 -154 1429 1354 369 0 0 0 chr15 75734383 75734424 -25646097 + (TG)n Simple_repeat Simple_repeat 1 41 0 202 314 38 50 chr15 75734757 75734916 -25645605 + L3 LINE CR1 1415 1571 -6 207 284 34 0 chr15 75735656 75735744 -25644777 + MIR SINE MIR 62 152 -56 381 343 60 35 chr15 75735994 75736361 -25644160 + L2 LINE L2 2881 3256 -16 335 22 0 22 chr15 75736364 75736409 -25644112 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 722 298 61 4 chr15 75736826 75737054 -25643467 + MIR SINE MIR 8 248 -14 213 290 149 68 chr15 75737758 75738006 -25642515 + L2 LINE L2 2917 3184 -88 191 329 0 13 chr15 75738006 75738085 -25642436 + MIR SINE MIR 59 136 -72 202 286 10 61 chr15 75738584 75738682 -25641839 - MIR SINE MIR -92 116 24 180 0 0 0 chr15 75739269 75739289 -25641232 + (CCCTG)n Simple_repeat Simple_repeat 1 20 0 189 365 35 28 chr15 75739358 75739503 -25641018 - MIR3 SINE MIR -26 182 37 1457 188 0 28 chr15 75740001 75740283 -25640238 - AluJo SINE Alu -10 302 29 332 315 246 13 chr15 75740283 75740674 -25639847 + L2 LINE L2 1788 2269 -1045 271 368 135 0 chr15 75740688 75740851 -25639670 - L2 LINE L2 -580 2734 2550 205 339 96 9 chr15 75740939 75741054 -25639467 - L2 LINE L2 -896 2418 2294 1911 149 30 0 chr15 75741642 75741943 -25638578 + AluJb SINE Alu 3 312 0 873 223 112 13 chr15 75742178 75742411 -25638110 + MIR SINE MIR 7 262 0 211 256 89 22 chr15 75742531 75742621 -25637900 - L2 LINE L2 -49 3264 3169 344 302 60 27 chr15 75742687 75742836 -25637685 - MIR SINE MIR -1 261 108 261 355 25 16 chr15 75743958 75744079 -25636442 + MIR SINE MIR 53 174 -88 563 301 104 5 chr15 75744953 75745146 -25635375 - MIR SINE MIR -17 245 34 203 250 18 36 chr15 75747773 75747829 -25632692 + MIR3 SINE MIR 102 156 -52 267 333 24 12 chr15 75748145 75748310 -25632211 + (TG)n Simple_repeat Simple_repeat 2 168 0 467 193 6 18 chr15 75748339 75748505 -25632016 + (TG)n Simple_repeat Simple_repeat 1 164 0 243 254 17 0 chr15 75749492 75749551 -25630970 + (CA)n Simple_repeat Simple_repeat 1 60 0 567 306 13 6 chr15 75750508 75750665 -25629856 - MER91B DNA MER1_type 0 190 33 233 182 23 0 chr15 75752536 75752580 -25627941 - L2 LINE L2 -2 3270 3226 245 310 90 35 chr15 75752776 75752921 -25627600 + MIR SINE MIR 78 230 -32 267 369 41 8 chr15 75753861 75754105 -25626416 - L2 LINE L2 -101 3171 2920 2050 130 51 61 chr15 75754134 75754628 -25625893 + SATR1 Satellite Satellite 1 489 0 695 269 116 14 chr15 75755380 75755596 -25624925 - MIR SINE MIR -8 254 17 210 307 11 57 chr15 75755616 75755704 -25624817 + MIR SINE MIR 109 192 -70 353 134 0 15 chr15 75755856 75755923 -25624598 + (GGA)n Simple_repeat Simple_repeat 1 66 0 265 304 72 27 chr15 75756199 75756385 -25624136 - MIR SINE MIR -54 208 13 338 360 45 22 chr15 75756546 75756768 -25623753 + L3 LINE CR1 1343 1569 -8 567 239 75 0 chr15 75758379 75758513 -25622008 - MER91A DNA MER1_type -8 188 45 929 118 0 0 chr15 75758876 75759003 -25621518 + AluJo SINE Alu 1 127 -175 841 278 32 20 chr15 75759350 75759743 -25620778 + L2 LINE L2 2738 3145 -168 829 209 0 0 chr15 75759743 75759901 -25620620 + AluJo SINE Alu 123 280 -32 379 241 113 35 chr15 75759901 75760042 -25620479 + L2 LINE L2 3162 3313 0 366 266 18 28 chr15 75760111 75760220 -25620301 - MIR3 SINE MIR -45 163 56 226 273 91 45 chr15 75760990 75761078 -25619443 + MIR3 SINE MIR 92 183 -25 1008 240 101 31 chr15 75761202 75761590 -25618931 - MER115 DNA AcHobo -2 691 277 2153 183 19 8 chr15 75762915 75763276 -25617245 + MLT1A1 LTR MaLR 1 365 0 464 250 114 0 chr15 75763542 75763674 -25616847 - MIR SINE MIR -6 256 110 1337 279 25 7 chr15 75763728 75764169 -25616352 + LTR16C LTR ERVL 42 490 -1 321 279 235 22 chr15 75765098 75765234 -25615287 + MIR SINE MIR 20 184 -78 755 263 186 11 chr15 75765282 75765844 -25614677 - L2 LINE L2 -79 3234 2590 950 275 74 27 chr15 75765861 75766277 -25614244 - MER113 DNA MER1_type? -11 510 66 2090 119 0 0 chr15 75766277 75766570 -25613951 + AluSc SINE Alu 1 293 -16 950 275 74 27 chr15 75766570 75766640 -25613881 - MER113 DNA MER1_type? -455 66 1 2225 100 0 16 chr15 75768926 75769236 -25611285 - AluSx SINE Alu -7 305 1 977 202 55 118 chr15 75770157 75770266 -25610255 + MER33 DNA MER1_type 1 115 -2470 2077 90 0 0 chr15 75770266 75770555 -25609966 + AluSx SINE Alu 19 307 0 977 202 55 118 chr15 75770555 75770790 -25609731 + MER33 DNA MER1_type 115 324 0 731 269 82 10 chr15 75771066 75771274 -25609247 + MIR SINE MIR 29 251 -11 199 329 0 14 chr15 75771925 75771998 -25608523 - MIR SINE MIR -87 121 50 338 219 125 42 chr15 75772009 75772105 -25608416 - L2 LINE L2 -8 3305 3202 283 240 125 82 chr15 75772117 75772325 -25608196 - L2 LINE L2 -212 3060 2844 418 195 12 0 chr15 75772466 75772548 -25607973 + MLT1L LTR MaLR 162 244 -371 * 489 269 13 0 chr15 75772546 75772695 -25607826 + MLT1L LTR MaLR 465 615 0 235 333 118 0 chr15 75772699 75772801 -25607720 - L2 LINE L2 -515 2799 2686 2111 137 0 0 chr15 75772802 75773108 -25607413 + AluSq SINE Alu 3 308 -5 2220 88 0 0 chr15 75773118 75773434 -25607087 + AluY SINE Alu 1 316 0 515 189 0 11 chr15 75773443 75773538 -25606983 + L1MB3 LINE L1 6089 6182 -1 374 280 57 40 chr15 75773591 75773766 -25606755 + L3 LINE CR1 1388 1565 -12 728 176 82 56 chr15 75773984 75774251 -25606270 + MER33 DNA MER1_type 1 274 -50 399 306 110 14 chr15 75775168 75775385 -25605136 - MIR SINE MIR -8 254 5 371 253 10 10 chr15 75775794 75775893 -25604628 + MIR3 SINE MIR 75 173 -35 270 264 206 26 chr15 75776669 75776824 -25603697 + MIR SINE MIR 80 262 0 437 240 50 8 chr15 75777846 75777967 -25602554 + MIR3 SINE MIR 4 129 -79 1648 234 69 64 chr15 75777969 75778503 -25602018 + MLT1F1 LTR MaLR 2 563 -4 227 274 119 0 chr15 75778504 75778588 -25601933 + MIR SINE MIR 119 212 -50 547 317 86 0 chr15 75778694 75778937 -25601584 + L1ME3A LINE L1 5680 5943 -227 391 300 55 55 chr15 75779082 75779282 -25601239 - MIR SINE MIR -8 254 55 210 319 149 11 chr15 75779265 75779359 -25601162 + MIR SINE MIR 41 147 -61 * 504 258 69 6 chr15 75779603 75779762 -25600759 - MIR SINE MIR -11 251 83 357 109 0 0 chr15 75779992 75780047 -25600474 + (TTCA)n Simple_repeat Simple_repeat 4 58 0 320 298 41 16 chr15 75780172 75780293 -25600228 - L2 LINE L2 -217 3055 2932 483 311 99 9 chr15 75781067 75781279 -25599242 + MIR SINE MIR 20 250 -12 188 369 48 0 chr15 75782093 75782177 -25598344 - MIR SINE MIR -86 122 35 295 298 75 0 chr15 75783881 75783975 -25596546 - MIR SINE MIR -67 195 95 583 306 44 39 chr15 75786010 75786239 -25594282 - MIR SINE MIR 0 262 33 256 119 169 0 chr15 75787287 75787346 -25593175 - MIR3 SINE MIR -25 183 115 417 330 120 20 chr15 75787382 75787582 -25592939 - MIR SINE MIR -1 261 42 193 111 444 0 chr15 75790367 75790430 -25590091 + L2 LINE L2 3223 3313 0 205 336 146 9 chr15 75791333 75791443 -25589078 + MIR SINE MIR 88 212 -50 432 0 0 0 chr15 75791667 75791715 -25588806 + (TG)n Simple_repeat Simple_repeat 2 49 0 237 317 137 12 chr15 75791769 75791930 -25588591 + L2 LINE L2 2894 3074 -198 386 168 168 0 chr15 75792226 75792333 -25588188 - MIR3 SINE MIR -3 205 81 294 308 25 93 chr15 75793493 75793772 -25586749 - L2 LINE L2 -186 3086 2827 260 256 36 32 chr15 75793810 75793976 -25586545 - MIR SINE MIR -61 147 10 355 280 109 57 chr15 75794735 75794910 -25585611 + MIR SINE MIR 5 188 -74 296 248 11 0 chr15 75795015 75795093 -25585428 - MIR SINE MIR -63 145 63 803 218 40 17 chr15 75797263 75797437 -25583084 + MER5B DNA MER1_type 1 178 0 244 332 186 13 chr15 75798004 75798155 -25582366 - MIR SINE MIR -50 212 37 455 257 35 0 chr15 75798564 75798677 -25581844 + L2 LINE L2 3137 3253 -19 537 257 339 0 chr15 75799419 75799602 -25580919 - MIR SINE MIR 0 262 18 228 280 28 28 chr15 75799819 75799926 -25580595 - L2 LINE L2 -287 2985 2879 510 31 0 0 chr15 75800364 75800428 -25580093 + (TG)n Simple_repeat Simple_repeat 2 65 0 228 333 59 0 chr15 75801671 75801773 -25578748 - MIR3 SINE MIR -12 196 89 222 200 0 174 chr15 75802635 75802750 -25577771 + MIR SINE MIR 48 142 -120 309 341 187 6 chr15 75803751 75803933 -25576588 + MIR SINE MIR 47 261 -1 237 354 50 0 chr15 75803969 75804068 -25576453 + MIR SINE MIR 19 122 -86 775 260 178 21 chr15 75804172 75804675 -25575846 + MLT1H1 LTR MaLR 14 550 0 284 260 0 41 chr15 75805599 75805672 -25574849 - MIR SINE MIR -188 74 5 278 285 104 6 chr15 75805629 75805773 -25574748 + MIR SINE MIR 37 192 -16 * 208 250 48 48 chr15 75806327 75806411 -25574110 - MIR3 SINE MIR -115 93 10 256 347 8 33 chr15 75806948 75807069 -25573452 + MIR SINE MIR 28 145 -117 439 375 65 16 chr15 75807071 75807319 -25573202 - MIR SINE MIR -1 261 2 695 271 18 46 chr15 75808795 75809013 -25571508 - MIR SINE MIR -50 212 1 198 103 0 0 chr15 75809300 75809329 -25571192 + (GGA)n Simple_repeat Simple_repeat 3 31 0 183 244 0 0 chr15 75809542 75809587 -25570934 - L3 LINE CR1 -453 1124 1080 217 321 9 9 chr15 75809606 75809715 -25570806 + GA-rich Low_complexity Low_complexity 3 111 0 24 53 0 0 chr15 75809745 75809783 -25570738 + GC_rich Low_complexity Low_complexity 1 38 0 283 282 46 38 chr15 75813404 75813535 -25566986 - MIR3 SINE MIR -76 132 1 345 355 19 0 chr15 75814260 75814367 -25566154 - L1M4 LINE L1 -2956 3190 3082 180 0 0 0 chr15 75814372 75814392 -25566129 + (G)n Simple_repeat Simple_repeat 1 20 0 269 204 19 0 chr15 75915570 75915624 -25464897 + MIR SINE MIR 86 140 -68 198 239 33 0 chr15 75915860 75915952 -25464569 + GA-rich Low_complexity Low_complexity 6 100 0 192 197 28 14 chr15 75916033 75916104 -25464417 + GA-rich Low_complexity Low_complexity 1 72 0 383 310 3 20 chr15 75916193 75916489 -25464032 + G-rich Low_complexity Low_complexity 1 290 0 533 265 21 122 chr15 75916575 75916911 -25463610 + L2 LINE L2 2921 3222 -50 1036 214 148 17 chr15 75916960 75917039 -25463482 + MER58B DNA MER1_type 6 73 -2347 1757 158 0 43 chr15 75917039 75917214 -25463307 - AluJb SINE Alu -4 308 152 2163 114 3 0 chr15 75917214 75917511 -25463010 - AluSq SINE Alu -15 298 1 1757 158 0 43 chr15 75917511 75917657 -25462864 - AluJb SINE Alu -160 152 1 1036 214 148 17 chr15 75917657 75917867 -25462654 + MER58B DNA MER1_type 73 333 -8 295 182 0 125 chr15 75918156 75918194 -25462327 - L2 LINE L2 0 3313 3290 1836 205 28 11 chr15 75918194 75918550 -25461971 - MLT1A1 LTR MaLR -3 362 1 295 182 0 125 chr15 75918550 75918599 -25461922 - L2 LINE L2 -22 3291 3237 1908 85 103 0 chr15 75920473 75920754 -25459767 + AluSg SINE Alu 1 310 0 471 258 103 38 chr15 75920762 75920975 -25459546 + MIR SINE MIR 36 262 0 454 274 30 7 chr15 75921046 75921181 -25459340 + MIR3 SINE MIR 15 152 -56 2141 101 7 3 chr15 75921258 75921555 -25458966 - AluSq SINE Alu -15 298 1 559 264 27 0 chr15 75922301 75922449 -25458072 + MER5A DNA MER1_type 8 159 -30 843 147 0 0 chr15 75922510 75922626 -25457895 + FLAM_C SINE Alu 3 118 -15 31 0 0 0 chr15 75922626 75922657 -25457864 + AT_rich Low_complexity Low_complexity 1 31 0 496 216 90 0 chr15 75922701 75922835 -25457686 + MIR SINE MIR 36 181 -81 851 103 15 7 chr15 75922901 75923037 -25457484 + MER34 LTR ERV1 2 138 -404 785 163 0 50 chr15 75923038 75923179 -25457342 + AluJo SINE Alu 2 135 -177 2072 100 3 17 chr15 75923179 75923479 -25457042 + AluSx SINE Alu 1 296 -16 907 153 63 3 chr15 75923484 75923652 -25456869 + MER34 LTR ERV1 380 542 0 196 315 82 0 chr15 75923853 75923999 -25456522 - MIR3 SINE MIR -26 182 25 24 32 0 0 chr15 75924507 75924538 -25455983 + GC_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr15 75924622 75924644 -25455877 + GC_rich Low_complexity Low_complexity 1 22 0 364 303 0 0 chr15 75924678 75924787 -25455734 + MIR SINE MIR 36 144 -118 212 267 129 44 chr15 75925352 75925577 -25454944 + L2 LINE L2 2824 3067 -205 422 250 117 0 chr15 75925818 75925938 -25454583 - MIR SINE MIR -12 250 117 2147 97 0 55 chr15 75927032 75927362 -25453159 - AluSx SINE Alu 0 312 1 374 306 77 33 chr15 75927762 75927945 -25452576 + MIR SINE MIR 2 192 -70 258 349 68 0 chr15 75928101 75928233 -25452288 - L2 LINE L2 -212 3060 2920 377 254 68 17 chr15 75928657 75928775 -25451746 - MIR SINE MIR -62 200 77 182 296 0 0 chr15 75929101 75929145 -25451376 - L2 LINE L2 -2 3270 3227 2100 104 3 7 chr15 75929319 75929606 -25450915 + AluSx SINE Alu 7 292 -20 414 352 57 6 chr15 75929620 75929818 -25450703 + MIR SINE MIR 30 235 -27 497 285 6 48 chr15 75929838 75930003 -25450518 - MER5B DNA MER1_type -2 176 19 994 209 6 0 chr15 75930008 75930190 -25450331 - MER5A DNA MER1_type -6 183 1 298 248 62 35 chr15 75931451 75931564 -25448957 + L2 LINE L2 2164 2279 -1035 191 114 29 0 chr15 75932079 75932114 -25448407 + (CTGGGG)n Simple_repeat Simple_repeat 6 41 0 289 241 277 15 chr15 75932311 75932448 -25448073 - MIR SINE MIR -70 192 20 373 189 63 21 chr15 75933057 75933152 -25447369 + MIR SINE MIR 84 182 -80 265 322 35 9 chr15 75933433 75933548 -25446973 + L2 LINE L2 2921 3038 -234 2919 81 14 0 chr15 75933935 75934305 -25446216 - THE1C LTR MaLR 0 375 1 378 278 35 0 chr15 75935393 75935537 -25444984 - L1ME4a LINE L1 -23 6098 5950 1749 164 0 10 chr15 75935553 75935851 -25444670 + AluJb SINE Alu 1 295 -17 2161 94 0 20 chr15 75935886 75936184 -25444337 + AluSg SINE Alu 1 292 -18 3326 121 45 77 chr15 75936241 75936630 -25443891 + L1MB3 LINE L1 5565 5928 -255 1589 123 4 0 chr15 75936630 75936858 -25443663 - AluSx SINE Alu -83 229 1 3326 121 45 77 chr15 75936858 75937107 -25443414 + L1MB3 LINE L1 5928 6183 0 2206 76 7 0 chr15 75937149 75937438 -25443083 - AluSg SINE Alu -11 299 9 517 262 172 20 chr15 75937467 75937868 -25442653 - L1ME4a LINE L1 -69 6052 5591 366 263 160 25 chr15 75937933 75938166 -25442355 - MER102b DNA MER1_type 0 341 64 261 0 0 0 chr15 75938483 75938512 -25442009 + (T)n Simple_repeat Simple_repeat 1 29 0 527 361 17 30 chr15 75938537 75938833 -25441688 - L1ME4a LINE L1 -1490 4656 4365 776 161 17 0 chr15 75938841 75938959 -25441562 - FLAM_C SINE Alu -22 121 2 1462 151 32 121 chr15 75939140 75939279 -25441242 + MER2 DNA MER2_type 1 151 -194 1754 145 13 26 chr15 75939279 75939582 -25440939 - AluJo SINE Alu -13 299 1 1462 151 32 121 chr15 75939582 75939814 -25440707 + MER2 DNA MER2_type 151 339 -6 1282 93 33 0 chr15 75939905 75940087 -25440434 + AluSg/x SINE Alu 123 310 0 1903 125 3 14 chr15 75940198 75940508 -25440013 + AluSx SINE Alu 1 307 0 272 325 108 0 chr15 75940673 75940830 -25439691 - L1ME4a LINE L1 -2234 3912 3739 307 89 0 0 chr15 75940848 75940893 -25439628 - FLAM SINE Alu -2 131 87 934 209 0 52 chr15 75940893 75941104 -25439417 - AluJo SINE Alu -112 200 1 213 319 97 9 chr15 75941673 75941786 -25438735 - MIR SINE MIR -117 145 23 2311 69 0 0 chr15 75941950 75942240 -25438281 + AluY SINE Alu 22 311 0 587 264 55 36 chr15 75942620 75942840 -25437681 + MIR SINE MIR 39 262 0 1647 140 28 28 chr15 75943180 75943466 -25437055 - AluJo SINE Alu -18 294 9 471 306 31 25 chr15 75943970 75944166 -25436355 + MIR SINE MIR 47 243 -19 368 225 34 0 chr15 75944662 75944751 -25435770 + MIR SINE MIR 46 137 -125 395 244 11 0 chr15 75945045 75945135 -25435386 - MER5A DNA MER1_type -83 106 16 1132 139 6 0 chr15 75945932 75946097 -25434424 - FRAM SINE Alu 0 166 1 739 237 18 0 chr15 75946132 75946301 -25434220 - MIR SINE MIR -10 252 81 205 238 131 12 chr15 75947011 75947095 -25433426 - L2 LINE L2 -563 2751 2658 2069 88 9 94 chr15 75947527 75947867 -25432654 - AluSq SINE Alu 0 313 3 373 245 20 71 chr15 75948431 75948507 -25432014 + MIR SINE MIR 41 119 -143 2298 72 0 23 chr15 75948507 75948812 -25431709 - AluY SINE Alu -13 298 1 373 245 20 71 chr15 75948812 75948905 -25431616 + MIR SINE MIR 119 208 -54 264 294 163 0 chr15 75949013 75949105 -25431416 - L2 LINE L2 -238 3034 2928 263 374 0 16 chr15 75949354 75949477 -25431044 + MIR SINE MIR 21 141 -67 267 79 0 0 chr15 75953184 75953222 -25427299 + (CCA)n Simple_repeat Simple_repeat 2 39 0 199 133 0 0 chr15 75953345 75953375 -25427146 - MIR SINE MIR -63 145 116 362 222 86 12 chr15 75953381 75953479 -25427042 - MER53 DNA DNA 0 189 73 1705 168 19 16 chr15 75953479 75953789 -25426732 - AluJb SINE Alu -1 311 1 362 222 86 12 chr15 75953789 75953852 -25426669 - MER53 DNA DNA -116 73 16 198 0 0 0 chr15 75954028 75954050 -25426471 + (CCA)n Simple_repeat Simple_repeat 3 24 0 218 345 24 0 chr15 75954949 75955033 -25425488 + MIR3 SINE MIR 109 194 -14 2112 118 3 0 chr15 75955037 75955343 -25425178 - AluSx SINE Alu -5 307 1 816 267 56 94 chr15 75955511 75956114 -25424407 - L2 LINE L2 -2 3311 2729 1947 121 0 45 chr15 75956132 75956445 -25424076 + AluSx SINE Alu 1 299 -13 2042 122 13 10 chr15 75956446 75956750 -25423771 + AluSx SINE Alu 1 305 -7 372 267 233 17 chr15 75956817 75956993 -25423528 - MIR SINE MIR -24 238 25 826 163 47 6 chr15 75958085 75958257 -25422264 + MER96B DNA MER1_type? 1 179 -238 2610 241 84 32 chr15 75958383 75958959 -25421562 - L1ME3 LINE L1 -1 6161 5616 1897 136 7 20 chr15 75958959 75959260 -25421261 + AluSq SINE Alu 2 298 -15 2610 241 84 32 chr15 75959260 75959616 -25420905 - L1ME3 LINE L1 -546 5616 5280 2083 108 0 14 chr15 75959616 75959935 -25420586 + AluSx SINE Alu 1 312 0 2610 241 84 32 chr15 75959935 75960319 -25420202 - L1ME3 LINE L1 -882 5280 4783 188 143 0 0 chr15 75960457 75960485 -25420036 + L2 LINE L2 3210 3237 -35 735 232 6 17 chr15 75960499 75960676 -25419845 - MIR SINE MIR 0 262 88 218 366 56 12 chr15 75960878 75961039 -25419482 + L2 LINE L2 2553 2720 -594 264 277 46 72 chr15 75961150 75961345 -25419176 + L2 LINE L2 2871 3060 -212 230 274 0 0 chr15 75962039 75962090 -25418431 + MER91A DNA MER1_type 1 51 -145 791 210 62 0 chr15 75962307 75962469 -25418052 - MER45A DNA AcHobo -6 172 1 456 200 218 0 chr15 75962595 75962705 -25417816 - MER94 DNA DNA 0 134 1 719 295 127 22 chr15 75963626 75964029 -25416492 - L2 LINE L2 -2 3311 2867 283 248 8 68 chr15 75964293 75964410 -25416111 + MIR SINE MIR 83 192 -70 728 140 0 0 chr15 75964600 75964707 -25415814 + FLAM_C SINE Alu 22 128 -15 577 215 81 49 chr15 75964707 75964930 -25415591 + L1ME3A LINE L1 5941 6170 0 247 261 116 0 chr15 75964945 75965014 -25415507 + MIR SINE MIR 37 113 -149 402 21 0 0 chr15 75965094 75965141 -25415380 + (ATG)n Simple_repeat Simple_repeat 1 47 0 277 290 129 39 chr15 75965300 75965321 -25415200 + MIR SINE MIR 84 102 -160 1676 122 0 0 chr15 75965321 75965568 -25414953 - AluY SINE Alu 0 311 65 277 290 129 39 chr15 75965568 75965701 -25414820 + MIR SINE MIR 102 252 -10 1870 137 6 35 chr15 75965927 75966240 -25414281 + AluJo SINE Alu 1 304 -8 1709 182 79 12 chr15 75966255 75966672 -25413849 + Charlie4a DNA MER1_type 58 502 -6 397 251 176 27 chr15 75967148 75967359 -25413162 + MIR SINE MIR 13 255 -7 329 230 68 0 chr15 75967897 75967971 -25412550 + L2 LINE L2 3182 3260 -12 1993 166 0 3 chr15 75967979 75968280 -25412241 - AluSx SINE Alu -12 300 1 364 293 126 6 chr15 75968347 75968521 -25412000 - L1MC4a LINE L1 -1688 6120 5926 970 175 0 12 chr15 75968524 75968684 -25411837 - AluJb SINE Alu 0 312 155 227 152 0 0 chr15 75968685 75968718 -25411803 - Alu SINE Alu -267 33 1 1141 292 25 17 chr15 75968723 75969127 -25411394 - L1MC4a LINE L1 -1854 5954 5548 192 182 0 0 chr15 75970366 75970399 -25410122 - MIR SINE MIR -60 148 116 376 275 90 79 chr15 75970419 75970608 -25409913 - MIR SINE MIR -18 244 54 190 219 102 78 chr15 75971570 75971698 -25408823 + L2 LINE L2 3138 3268 -4 622 289 52 0 chr15 75971698 75971871 -25408650 - MIR SINE MIR -2 260 79 2003 145 28 0 chr15 75971873 75972162 -25408359 - AluJb SINE Alu -15 297 1 301 300 15 54 chr15 75972859 75972989 -25407532 - MIR3 SINE MIR -21 187 63 1948 135 10 10 chr15 75974204 75974507 -25406014 + AluJo SINE Alu 1 303 -9 2199 132 0 0 chr15 75974783 75975093 -25405428 - AluSg SINE Alu 0 310 1 437 208 31 88 chr15 75975212 75975371 -25405150 - L2 LINE L2 -43 3270 3121 1055 248 15 30 chr15 75975946 75976212 -25404309 - MIR SINE MIR 0 262 1 236 356 39 11 chr15 75976526 75976706 -25403815 + L2 LINE L2 2931 3115 -198 1614 78 16 39 chr15 75976713 75976870 -25403651 - L1MA3 LINE L1 0 6305 6155 2417 82 3 0 chr15 75976870 75977164 -25403357 - AluSp SINE Alu -15 298 4 1614 78 16 39 chr15 75977164 75977264 -25403257 - L1MA3 LINE L1 -150 6155 6054 678 204 24 71 chr15 75977373 75977584 -25402937 + L2 LINE L2 3113 3313 0 234 273 0 0 chr15 75977620 75977675 -25402846 - L2 LINE L2 -1 3271 3217 316 252 36 18 chr15 75977741 75977852 -25402669 - L1ME2 LINE L1 -17 6147 6035 23 0 0 0 chr15 75977947 75977970 -25402551 + GC_rich Low_complexity Low_complexity 1 23 0 322 246 23 29 chr15 75978021 75978192 -25402329 + G-rich Low_complexity Low_complexity 3 172 0 504 203 65 0 chr15 75978843 75978966 -25401555 + MIR SINE MIR 84 214 -48 1796 151 3 23 chr15 75978979 75979284 -25401237 - AluJo SINE Alu -1 311 13 199 241 278 19 chr15 75979301 75979409 -25401112 - MIR3 SINE MIR -6 202 67 * 226 179 0 0 chr15 75979380 75979419 -25401102 - MIR SINE MIR -168 94 56 2281 83 3 0 chr15 75980282 75980571 -25399950 + AluY SINE Alu 22 311 0 290 264 92 0 chr15 75980669 75980756 -25399765 + MIR SINE MIR 91 185 -77 388 282 41 12 chr15 75980851 75981021 -25399500 + L1ME3A LINE L1 5764 5938 -232 2219 74 4 0 chr15 75981436 75981705 -25398816 + AluSx SINE Alu 1 270 -42 765 140 35 0 chr15 75983906 75984049 -25396472 - L1MA4A LINE L1 -4 6299 6152 21 36 0 0 chr15 75987048 75987076 -25393445 + GC_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr15 75987300 75987325 -25393196 + GC_rich Low_complexity Low_complexity 1 25 0 212 311 38 47 chr15 75988718 75988824 -25391697 + MIR SINE MIR 103 207 -55 632 207 104 18 chr15 75988834 75988998 -25391523 + MER5B DNA MER1_type 1 178 0 647 221 7 45 chr15 75989132 75989286 -25391235 + MIR SINE MIR 28 175 -87 771 182 27 0 chr15 75989364 75989512 -25391009 + MER67A LTR ERV1 1 152 -391 * 811 208 57 38 chr15 75989501 75989599 -25390922 - MER1B DNA MER1_type -2373 339 244 2321 112 0 0 chr15 75989599 75989904 -25390617 + AluSx SINE Alu 1 305 -7 811 208 57 38 chr15 75989904 75989934 -25390587 - MER1B DNA MER1_type -2468 244 216 2305 121 0 0 chr15 75989934 75990232 -25390289 + AluSx SINE Alu 1 298 -14 811 208 57 38 chr15 75990232 75990420 -25390101 - MER1B DNA MER1_type -2496 216 2 890 205 11 68 chr15 75990421 75990699 -25389822 + MER67A LTR ERV1 132 393 -150 366 213 6 60 chr15 75990717 75990900 -25389621 + C-rich Low_complexity Low_complexity 6 178 0 293 100 20 20 chr15 75991054 75991104 -25389417 + AluSp/q SINE Alu 198 247 -56 1032 177 62 5 chr15 75991106 75991298 -25389223 + AluJb SINE Alu 85 287 -25 2050 139 86 12 chr15 75991390 75991729 -25388792 - THE1B LTR MaLR 0 364 1 747 273 97 65 chr15 75993011 75993204 -25387317 - L2 LINE L2 0 3313 3128 485 128 0 0 chr15 75993204 75993290 -25387231 + L1MB4 LINE L1 6094 6179 -1 747 273 97 65 chr15 75993290 75993528 -25386993 - L2 LINE L2 -185 3128 2868 247 250 156 39 chr15 75993815 75993943 -25386578 - L3 LINE CR1 -12 1565 1423 383 195 0 26 chr15 75994197 75994274 -25386247 + AluSp SINE Alu 120 194 -109 1473 216 63 8 chr15 75994302 75994696 -25385825 - L1ME2 LINE L1 -170 5994 5579 1424 211 56 85 chr15 75994828 75995402 -25385119 + LTR5 LTR ERVK 413 969 0 3644 186 39 12 chr15 75995402 75996443 -25384078 - L1M4 LINE L1 -442 5742 4657 2430 81 3 7 chr15 75996443 75996750 -25383771 - AluY SINE Alu -5 306 1 3644 186 39 12 chr15 75996750 75996959 -25383562 - L1M4 LINE L1 -1527 4657 4455 1185 119 6 0 chr15 75997026 75997185 -25383336 - AluSg/x SINE Alu -11 301 142 2332 80 17 0 chr15 75997340 75997640 -25382881 + AluSq SINE Alu 1 305 -8 996 239 50 9 chr15 75997682 75997904 -25382617 + MIR SINE MIR 32 262 0 192 379 0 0 chr15 75998017 75998083 -25382438 + L2 LINE L2 3123 3188 -84 198 143 0 0 chr15 75998147 75998182 -25382339 + (CCCCCA)n Simple_repeat Simple_repeat 1 35 0 240 292 83 21 chr15 75998265 75998361 -25382160 - MIR3 SINE MIR -23 185 84 2155 67 11 4 chr15 75998868 75999138 -25381383 - AluY SINE Alu -6 305 34 1407 168 62 36 chr15 76000152 76000450 -25380071 - AluJo SINE Alu 0 305 1 294 202 0 36 chr15 76001203 76001287 -25379234 + L2 LINE L2 2348 2428 -886 635 255 114 47 chr15 76001340 76001838 -25378683 + L1MC4 LINE L1 7431 8041 -1 699 302 166 11 chr15 76001848 76002514 -25378007 + L2 LINE L2 2532 3310 -3 234 393 17 17 chr15 76002514 76002631 -25377890 - L2 LINE L2 -53 3219 3103 339 235 50 59 chr15 76003335 76003454 -25377067 + L1ME4a LINE L1 5796 5913 -208 404 147 0 11 chr15 76004004 76004099 -25376422 + (CA)n Simple_repeat Simple_repeat 2 95 0 243 0 0 0 chr15 76004160 76004187 -25376334 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 460 188 52 128 chr15 76004325 76004474 -25376047 - L1MEc LINE L1 -1248 4967 4843 817 154 0 22 chr15 76004474 76004610 -25375911 - FLAM_C SINE Alu 0 133 1 460 188 52 128 chr15 76004610 76004710 -25375811 - L1MEc LINE L1 -1372 4843 4737 447 232 14 78 chr15 76004718 76004860 -25375661 + MLT1F1 LTR MaLR 10 142 -451 342 91 0 0 chr15 76004906 76004961 -25375560 + L1MA2 LINE L1 6102 6156 -148 1034 235 108 34 chr15 76004966 76005375 -25375146 + MLT1F1 LTR MaLR 129 567 0 1535 257 58 31 chr15 76005375 76005640 -25374881 - L1MEc LINE L1 -1473 4742 4486 2166 120 0 3 chr15 76005640 76005982 -25374539 - AluSq SINE Alu 0 341 1 1535 257 58 31 chr15 76005982 76006365 -25374156 - L1MEc LINE L1 -1729 4486 4115 2399 81 0 7 chr15 76006365 76006662 -25373859 - AluY SINE Alu -16 295 1 1535 257 58 31 chr15 76006662 76006702 -25373819 - L1MEc LINE L1 -2100 4115 1693 1308 201 75 33 chr15 76006702 76006953 -25373568 - MLT1F1 LTR MaLR 0 567 297 1510 212 67 67 chr15 76006953 76007458 -25373063 - MLT1D LTR MaLR 0 505 1 1308 201 75 33 chr15 76007458 76007539 -25372982 - MLT1F1 LTR MaLR -270 297 221 1497 85 80 18 chr15 76007642 76007866 -25372655 - L1PA10 LINE L1 -1 6167 5930 829 290 19 11 chr15 76007884 76008158 -25372363 - MLT1H1 LTR MaLR -281 274 1 434 321 19 5 chr15 76008161 76008376 -25372145 - L1MEc LINE L1 -4703 1693 1476 1587 181 44 0 chr15 76008425 76008718 -25371803 - AluJb SINE Alu -6 306 1 1931 138 6 18 chr15 76008727 76009060 -25371461 - L1MB7 LINE L1 -119 6065 5737 2449 163 11 11 chr15 76009060 76009496 -25371025 + LTR5 LTR ERVK 1 436 -533 655 153 18 9 chr15 76009659 76009770 -25370751 - FLAM_C SINE Alu -11 132 21 1059 127 106 49 chr15 76010147 76010388 -25370133 + MER44D DNA MER2_type 1 525 -84 417 99 28 14 chr15 76010388 76010459 -25370062 - Tigger5 DNA MER2_type -1 2322 2251 245 150 0 0 chr15 76010433 76010473 -25370048 - Tigger5 DNA MER2_type -2273 50 11 * 327 155 127 14 chr15 76010475 76010546 -25369975 + MER44D DNA MER2_type 626 704 -1 231 284 14 14 chr15 76011672 76011746 -25368775 - MER112 DNA MER1_type -9 251 178 1720 144 49 11 chr15 76011762 76012046 -25368475 + AluJo SINE Alu 1 295 -17 1904 129 9 60 chr15 76012053 76012371 -25368150 + AluSx SINE Alu 1 302 -10 1638 169 18 3 chr15 76012414 76012698 -25367823 + AluJo SINE Alu 2 289 -23 2221 92 0 33 chr15 76012801 76013106 -25367415 - AluSx SINE Alu -17 295 1 32 0 0 0 chr15 76014144 76014176 -25366345 + AT_rich Low_complexity Low_complexity 1 32 0 439 242 94 13 chr15 76014344 76014493 -25366028 - MER112 DNA MER1_type -99 161 1 247 273 13 39 chr15 76014670 76014747 -25365774 - Charlie4a DNA MER1_type -9 499 425 2496 49 0 20 chr15 76015164 76015470 -25365051 - AluY SINE Alu -11 300 1 2546 158 68 46 chr15 76015488 76016335 -25364186 + MER52C LTR ERV1 6 1046 -232 886 149 186 70 chr15 76016389 76016738 -25363783 + MER52C LTR ERV1 924 1278 0 1615 167 108 11 chr15 76017097 76017230 -25363291 - Charlie4a DNA MER1_type -1522 439 320 2047 121 10 29 chr15 76017230 76017536 -25362985 - AluJb SINE Alu -12 300 1 1615 167 108 11 chr15 76017536 76017773 -25362748 - Charlie4a DNA MER1_type -1641 320 33 436 224 152 8 chr15 76018160 76018285 -25362236 - L3 LINE CR1 -11 1566 1424 596 238 63 7 chr15 76019431 76019574 -25360947 + MIR SINE MIR 63 213 -49 275 295 49 41 chr15 76019607 76019729 -25360792 - L2 LINE L2 0 3272 3150 348 253 183 15 chr15 76020260 76020462 -25360059 - L2 LINE L2 -230 3083 2848 1204 189 135 0 chr15 76020527 76020860 -25359661 - Zaphod DNA AcHobo -322 3709 3332 467 278 8 0 chr15 76020891 76021017 -25359504 - L1ME2 LINE L1 -24 6140 6014 578 207 129 0 chr15 76021134 76021274 -25359247 + MIR SINE MIR 46 203 -59 247 254 99 0 chr15 76021305 76021376 -25359145 + MIR SINE MIR 185 262 0 216 207 35 17 chr15 76022290 76022325 -25358196 + GA-rich Low_complexity Low_complexity 4 42 -20 2419 109 0 0 chr15 76022325 76022636 -25357885 + AluSx SINE Alu 1 311 -1 216 207 35 17 chr15 76022636 76022658 -25357863 + GA-rich Low_complexity Low_complexity 42 62 0 1801 169 0 17 chr15 76023168 76023497 -25357024 + AluJb SINE Alu 1 324 0 230 167 0 37 chr15 76023564 76023618 -25356903 + L1ME LINE L1 5398 5449 -672 1108 260 60 4 chr15 76023938 76024424 -25356097 - L1ME3 LINE L1 -14 6148 5597 3428 190 50 36 chr15 76024426 76025005 -25355516 - MER21B LTR ERV1 -75 788 194 1980 151 3 26 chr15 76025005 76025316 -25355205 - AluJo SINE Alu -2 310 7 3428 190 50 36 chr15 76025316 76025495 -25355026 - MER21B LTR ERV1 -669 194 19 371 179 9 113 chr15 76025493 76025599 -25354922 - MER21B LTR ERV1 -757 106 12 * 420 295 3 20 chr15 76025842 76026121 -25354400 + G-rich Low_complexity Low_complexity 1 274 0 2191 82 0 20 chr15 76026192 76026495 -25354026 + AluSg SINE Alu 1 297 -13 727 283 117 4 chr15 76026630 76026860 -25353661 + MIR SINE MIR 2 257 -5 345 263 53 0 chr15 76027035 76027130 -25353391 - MIR SINE MIR -76 132 33 322 316 20 0 chr15 76027785 76027883 -25352638 + L2 LINE L2 3212 3311 -2 923 107 24 12 chr15 76028238 76028407 -25352114 + CT-rich Low_complexity Low_complexity 2 172 0 2286 86 4 0 chr15 76028409 76028687 -25351834 - AluSq SINE Alu -34 279 1 2027 159 0 3 chr15 76029321 76029622 -25350899 + AluSx SINE Alu 1 300 -12 201 277 59 42 chr15 76029711 76029830 -25350691 - L2 LINE L2 -1074 2240 2120 397 304 126 10 chr15 76030048 76030255 -25350266 + MIR SINE MIR 7 237 -25 616 149 0 0 chr15 76033147 76033234 -25347287 + AluJ/FLAM SINE Alu 2 88 -224 311 211 57 32 chr15 76033628 76033751 -25346770 - L1MC4 LINE L1 -3 8039 7914 1109 111 140 34 chr15 76033755 76033962 -25346559 - AluJb SINE Alu 0 312 84 236 351 0 30 chr15 76034494 76034628 -25345893 + T-rich Low_complexity Low_complexity 5 134 0 1702 181 71 0 chr15 76034916 76035241 -25345280 - MER7A DNA MER2_type 0 346 1 2194 86 0 61 chr15 76035243 76035556 -25344965 - AluSg SINE Alu -16 294 1 362 265 287 13 chr15 76038860 76039090 -25341431 - L2 LINE L2 -79 3234 2942 23 33 0 0 chr15 76040318 76040348 -25340173 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr15 76041030 76041055 -25339466 + AT_rich Low_complexity Low_complexity 1 25 0 473 222 20 0 chr15 76041109 76041208 -25339313 + MER5A DNA MER1_type 9 109 -80 240 234 255 11 chr15 76041142 76041236 -25339285 - MER5A DNA MER1_type -32 157 41 * 1765 161 29 0 chr15 76044999 76045319 -25335202 + AluJo SINE Alu 1 328 0 1004 137 132 10 chr15 76046154 76046358 -25334163 + L1ME LINE L1 5469 5697 -469 1711 155 90 7 chr15 76046676 76046953 -25333568 - AluSx SINE Alu -12 300 1 210 346 39 31 chr15 76047341 76047471 -25333050 - MER5B DNA MER1_type -33 145 15 1256 226 25 19 chr15 76048134 76048448 -25332073 + MER46C DNA MER2_type 22 337 -1 181 316 158 9 chr15 76049291 76049405 -25331116 - MIR SINE MIR -126 136 6 364 150 33 0 chr15 76049653 76049713 -25330808 - MIR SINE MIR -82 180 119 201 39 0 0 chr15 76050629 76050655 -25329866 + (TTG)n Simple_repeat Simple_repeat 3 28 0 193 304 14 43 chr15 76051392 76051461 -25329060 - MIR SINE MIR -104 104 38 29 0 0 0 chr15 76051899 76051928 -25328593 + AT_rich Low_complexity Low_complexity 1 29 0 1773 115 0 4 chr15 76052055 76052298 -25328223 + AluSc SINE Alu 68 309 0 1798 149 25 0 chr15 76052380 76052656 -25327865 - AluJo SINE Alu -19 293 11 1239 171 180 9 chr15 76052683 76052715 -25327806 - Charlie4a DNA MER1_type -1550 411 386 2768 209 92 16 chr15 76052715 76053322 -25327199 + MER82 DNA MER2_type 1 653 0 1239 171 180 9 chr15 76053322 76053633 -25326888 - Charlie4a DNA MER1_type -1575 386 9 436 225 12 0 chr15 76053744 76053824 -25326697 - AluJb SINE Alu -98 214 134 1330 170 112 54 chr15 76053824 76053953 -25326568 - AluJo SINE Alu -19 293 173 2188 117 10 0 chr15 76053953 76054243 -25326278 - AluSx SINE Alu -19 293 1 1330 170 112 54 chr15 76054243 76054390 -25326131 - AluJo SINE Alu -139 173 1 396 216 54 27 chr15 76054391 76054502 -25326019 - L1M4 LINE L1 -688 5486 5373 923 163 0 0 chr15 76054578 76054719 -25325802 + FLAM_C SINE Alu 1 141 -2 2437 118 30 12 chr15 76055160 76055567 -25324954 + L1MA9 LINE L1 5899 6312 0 800 240 98 50 chr15 76055976 76056314 -25324207 + MLT1J1 LTR MaLR 90 443 -3 268 196 0 0 chr15 76056320 76056366 -25324155 + LTR67 LTR ERVL 509 554 -3 346 252 13 77 chr15 76056398 76056460 -25324061 + L1ME4a LINE L1 5977 6041 -80 1679 191 3 17 chr15 76056460 76056758 -25323763 - AluJo SINE Alu -18 294 1 346 252 13 77 chr15 76056758 76056771 -25323750 + L1ME4a LINE L1 6041 6053 -68 2406 102 0 6 chr15 76056771 76057084 -25323437 - AluSx SINE Alu -1 311 1 346 252 13 77 chr15 76057084 76057162 -25323359 + L1ME4a LINE L1 6053 6121 0 199 260 122 35 chr15 76057716 76057871 -25322650 - MIR SINE MIR -71 137 30 357 24 0 0 chr15 76057994 76058036 -25322485 + (TC)n Simple_repeat Simple_repeat 2 43 0 375 298 12 82 chr15 76058089 76058260 -25322261 - MIR3 SINE MIR -41 167 9 21 0 0 0 chr15 76058290 76058311 -25322210 + AT_rich Low_complexity Low_complexity 1 21 0 1852 259 36 19 chr15 76058319 76058848 -25321673 - L1ME3A LINE L1 -18 6152 5615 286 277 64 11 chr15 76059246 76059340 -25321181 + L2 LINE L2 3160 3258 -14 1094 178 62 22 chr15 76059417 76059642 -25320879 - MLT1D LTR MaLR 0 505 272 204 40 0 0 chr15 76059654 76059679 -25320842 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 1686 145 91 22 chr15 76059679 76059944 -25320577 - AluJo SINE Alu -25 287 1 233 105 53 0 chr15 76059946 76059984 -25320537 - MLT1D LTR MaLR -465 40 1 614 289 57 21 chr15 76060280 76060474 -25320047 + MIR SINE MIR 45 245 -17 4437 117 101 116 chr15 76060550 76061975 -25318546 + pTR5 LTR ERV1 744 2438 0 203 311 75 62 chr15 76062917 76063078 -25317443 + MIR SINE MIR 29 191 -71 397 190 60 30 chr15 76063715 76063815 -25316706 + MIR3 SINE MIR 90 192 -16 270 252 224 9 chr15 76063870 76063977 -25316544 - MIR3 SINE MIR -68 140 11 523 257 84 22 chr15 76064161 76064179 -25316342 - MIR SINE MIR 0 262 247 1544 180 57 20 chr15 76064179 76064479 -25316042 - AluJo SINE Alu 0 312 2 523 257 84 22 chr15 76064479 76064639 -25315882 - MIR SINE MIR -15 247 73 326 173 0 0 chr15 76065153 76065205 -25315316 - MIR SINE MIR -60 148 97 1925 126 15 0 chr15 76065567 76065838 -25314683 - AluSx SINE Alu -2 310 36 439 170 0 75 chr15 76066387 76066481 -25314040 + FLAM_C SINE Alu 49 135 -8 2061 115 34 3 chr15 76066693 76066988 -25313533 - AluSx SINE Alu -8 304 1 5655 63 29 17 chr15 76067213 76067541 -25312980 + LTR17 LTR ERV1 1 324 -456 2297 81 3 7 chr15 76067541 76067837 -25312684 + AluY SINE Alu 5 299 -12 5655 63 29 17 chr15 76067837 76068273 -25312248 + LTR17 LTR ERV1 324 774 -6 783 303 37 27 chr15 76068329 76068725 -25311796 + L1MC4a LINE L1 5619 6018 -224 1017 100 0 78 chr15 76068789 76068844 -25311677 - L1MB5 LINE L1 -8 6166 6108 1912 176 0 7 chr15 76068844 76069139 -25311382 + AluJo SINE Alu 1 293 -19 1017 100 0 78 chr15 76069139 76069263 -25311258 - L1MB5 LINE L1 -66 6108 6001 554 227 162 15 chr15 76069282 76069677 -25310844 - LTR33 LTR ERVL 0 521 27 666 200 109 11 chr15 76070772 76070947 -25309574 + MLT1C LTR MaLR 4 195 -272 1155 186 91 61 chr15 76070947 76071247 -25309274 + MLT1C LTR MaLR 1 290 -177 333 0 0 0 chr15 76071247 76071284 -25309237 + (TG)n Simple_repeat Simple_repeat 2 38 0 1888 161 0 34 chr15 76071291 76071613 -25308908 - AluJb SINE Alu -1 311 1 1155 186 91 61 chr15 76071613 76071951 -25308570 + MLT1C LTR MaLR 295 467 0 428 229 69 31 chr15 76072895 76073024 -25307497 + MIR3 SINE MIR 40 172 -36 289 290 38 15 chr15 76073255 76073386 -25307135 + MIR3 SINE MIR 74 207 -1 2154 129 16 3 chr15 76074261 76074570 -25305951 + AluSq SINE Alu 1 313 0 344 279 29 81 chr15 76074923 76075095 -25305426 + MIR SINE MIR 50 212 -50 499 238 72 59 chr15 76075150 76075336 -25305185 + MIR3 SINE MIR 25 211 -51 1943 169 13 0 chr15 76075353 76075654 -25304867 + AluJo SINE Alu 1 305 -7 740 203 0 0 chr15 76075656 76075789 -25304732 + FLAM_C SINE Alu 1 133 0 1348 93 5 52 chr15 76075811 76076004 -25304517 + AluSp SINE Alu 1 184 -129 263 320 48 10 chr15 76077341 76077444 -25303077 - MER91C DNA MER1_type 0 140 34 220 300 36 18 chr15 76077938 76078048 -25302473 - MIR SINE MIR -57 151 40 396 301 51 13 chr15 76080695 76080851 -25299670 - MIR SINE MIR -37 225 64 220 289 66 0 chr15 76081540 76081616 -25298905 - L2 LINE L2 -38 3234 3154 250 228 0 0 chr15 76082163 76082220 -25298301 - MIR3 SINE MIR -40 168 112 832 271 44 36 chr15 76083315 76083680 -25296841 - L1ME4a LINE L1 -212 5909 5542 2204 107 3 13 chr15 76083877 76084210 -25296311 + AluSc SINE Alu 1 309 0 225 248 99 8 chr15 76085277 76085398 -25295123 - L2 LINE L2 -223 3049 2918 1148 142 11 23 chr15 76086584 76086760 -25293761 + AluJo SINE Alu 1 174 -138 328 135 0 0 chr15 76086760 76086812 -25293709 - L1MA8 LINE L1 -74 6217 6166 642 167 50 0 chr15 76086847 76086967 -25293554 - FLAM_C SINE Alu -16 127 2 1352 153 0 23 chr15 76086996 76087211 -25293310 + AluJo SINE Alu 1 210 -102 245 98 24 0 chr15 76087250 76087291 -25293230 + (GAAAA)n Simple_repeat Simple_repeat 4 45 0 2397 88 0 3 chr15 76087733 76088029 -25292492 + AluSx SINE Alu 1 295 -17 1980 126 3 32 chr15 76088040 76088349 -25292172 + AluSx SINE Alu 1 300 -12 1852 138 0 41 chr15 76088640 76088959 -25291562 - AluSx SINE Alu 0 312 7 2195 244 39 26 chr15 76088985 76089328 -25291193 - L1MB7 LINE L1 -13 6171 5813 1783 162 28 0 chr15 76089328 76089612 -25290909 - AluJb SINE Alu -20 292 1 2195 244 39 26 chr15 76089612 76089932 -25290589 - L1MB7 LINE L1 -371 5813 5499 257 269 76 42 chr15 76089932 76090051 -25290470 - MIR SINE MIR -60 148 26 456 301 96 6 chr15 76090967 76091123 -25289398 + MIR SINE MIR 23 192 -70 203 162 27 0 chr15 76092073 76092110 -25288411 - L2 LINE L2 -19 3253 3216 198 311 34 25 chr15 76093819 76093938 -25286583 + MER5B DNA MER1_type 59 178 0 1148 170 31 111 chr15 76094221 76094545 -25285976 - MLT1C LTR MaLR -169 298 1 255 349 0 0 chr15 76094577 76094660 -25285861 - L1MC4 LINE L1 -582 7460 7378 393 205 146 34 chr15 76094700 76094912 -25285609 - L1MC4 LINE L1 -728 7233 7038 * 2261 198 20 16 chr15 76094894 76095444 -25285077 - L1M4 LINE L1 -3414 2732 2181 1152 214 34 51 chr15 76095712 76095933 -25284588 - MLT1A1 LTR MaLR 0 365 194 231 103 0 0 chr15 76095933 76095972 -25284549 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1152 214 34 51 chr15 76095972 76096163 -25284358 - MLT1A1 LTR MaLR -171 194 1 404 19 19 0 chr15 76097281 76097334 -25283187 + (TG)n Simple_repeat Simple_repeat 1 54 0 341 269 13 0 chr15 76097368 76097446 -25283075 - L2 LINE L2 -1 3312 3234 247 182 91 52 chr15 76098449 76098526 -25281995 - MIR3 SINE MIR -17 191 112 355 289 21 35 chr15 76099095 76099237 -25281284 - MER5A DNA MER1_type -2 187 48 236 259 165 38 chr15 76101663 76101821 -25278700 - L2 LINE L2 -559 2755 2578 736 267 77 18 chr15 76102604 76102825 -25277696 - MIR SINE MIR -4 258 25 264 283 33 11 chr15 76102850 76102942 -25277579 + MIR SINE MIR 168 261 -1 283 258 119 7 chr15 76103061 76103212 -25277309 + L1ME4a LINE L1 5949 6116 -5 23 92 0 0 chr15 76103927 76103992 -25276529 + AT_rich Low_complexity Low_complexity 1 65 0 184 30 61 0 chr15 76104092 76104125 -25276396 + (TA)n Simple_repeat Simple_repeat 1 35 0 2006 153 0 0 chr15 76104125 76104412 -25276109 - AluJb SINE Alu -25 287 1 1907 176 7 0 chr15 76104443 76104739 -25275782 - AluSq SINE Alu -15 298 1 2294 106 0 0 chr15 76104776 76105068 -25275453 - AluSq SINE Alu -21 292 1 1636 155 32 14 chr15 76105070 76105347 -25275174 - AluJb SINE Alu -30 282 1 264 345 0 0 chr15 76105480 76105564 -25274957 + L2 LINE L2 3229 3312 -1 246 261 15 0 chr15 76105608 76105673 -25274848 - L1ME LINE L1 -466 5655 5590 217 323 0 0 chr15 76106580 76106642 -25273879 - L2 LINE L2 -216 3056 2995 207 323 0 0 chr15 76106686 76106748 -25273773 - L2 LINE L2 -216 3056 2995 410 194 145 8 chr15 76107499 76107623 -25272898 - MER3 DNA MER1_type 0 2624 2484 354 163 23 35 chr15 76107627 76107713 -25272808 - MER3 DNA MER1_type -92 117 33 2247 87 7 14 chr15 76108044 76108333 -25272188 - AluSx SINE Alu -15 297 11 332 179 30 0 chr15 76108922 76108989 -25271532 + MIR SINE MIR 73 141 -67 243 0 0 0 chr15 76108989 76109016 -25271505 + (A)n Simple_repeat Simple_repeat 1 27 0 236 229 115 0 chr15 76109561 76109622 -25270899 - L2 LINE L2 0 3272 3205 225 227 0 0 chr15 76109894 76109938 -25270583 + L2 LINE L2 3229 3272 0 2547 243 55 10 chr15 76110391 76111142 -25269379 - L1ME1 LINE L1 -29 6137 5371 247 282 14 0 chr15 76113421 76113492 -25267029 - L2 LINE L2 -260 3053 2982 200 163 23 0 chr15 76114400 76114443 -25266078 + (TA)n Simple_repeat Simple_repeat 2 45 0 238 263 50 12 chr15 76114477 76114557 -25265964 - MLT1L LTR MaLR -18 597 515 352 254 74 8 chr15 76114714 76114836 -25265685 - MLT1J LTR MaLR -337 174 45 332 329 91 14 chr15 76116334 76116477 -25264044 - L2 LINE L2 0 3313 3160 578 81 0 12 chr15 76118452 76118538 -25261983 + AluJ/FRAM SINE Alu 216 300 -12 1527 151 118 32 chr15 76118930 76119209 -25261312 + AluJb SINE Alu 1 303 -9 2208 86 0 20 chr15 76119470 76119774 -25260747 + AluSq SINE Alu 1 298 -15 433 263 66 0 chr15 76120143 76120295 -25260226 - L1MC4a LINE L1 -1811 5997 5836 346 296 97 34 chr15 76120959 76121135 -25259386 - MIR SINE MIR -16 246 60 742 154 8 8 chr15 76121250 76121380 -25259141 - FLAM_A SINE Alu -2 140 11 1902 155 22 91 chr15 76121393 76121661 -25258860 - L1MB7 LINE L1 0 6184 5958 1479 130 58 38 chr15 76121661 76121953 -25258568 - AluJo SINE Alu -14 298 1 1902 155 22 91 chr15 76121953 76122135 -25258386 - L1MB7 LINE L1 -226 5958 5765 945 197 6 0 chr15 76122135 76122313 -25258208 + AluJb SINE Alu 133 311 -1 543 233 39 39 chr15 76123222 76123351 -25257170 - MIR SINE MIR -60 148 20 915 223 99 0 chr15 76123634 76123867 -25256654 + MIR SINE MIR 4 259 -3 1047 111 11 11 chr15 76124759 76124788 -25255733 + (TTTC)n Simple_repeat Simple_repeat 1 209 0 1047 111 11 11 chr15 76124788 76124968 -25255553 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 928 190 0 6 chr15 76125124 76125298 -25255223 - FRAM SINE Alu -2 174 2 590 270 104 14 chr15 76125802 76125913 -25254608 + MIR SINE MIR 28 128 -134 312 27 0 0 chr15 76125913 76125950 -25254571 + (TG)n Simple_repeat Simple_repeat 2 38 0 590 270 104 14 chr15 76125950 76126049 -25254472 + MIR SINE MIR 128 257 -5 195 262 0 0 chr15 76126935 76126977 -25253544 - MIR SINE MIR -81 127 86 188 348 34 17 chr15 76127178 76127296 -25253225 + L2 LINE L2 2716 2835 -479 391 276 40 26 chr15 76127485 76127637 -25252884 + L2 LINE L2 3158 3311 -2 1007 230 63 93 chr15 76128991 76129261 -25251260 - MLT1D LTR MaLR 0 505 206 773 167 31 0 chr15 76129282 76129429 -25251092 - MSTC LTR MaLR -245 151 1 446 335 16 0 chr15 76129938 76130123 -25250398 - L1MC/D LINE L1 -2005 5803 5616 22 0 0 0 chr15 76131544 76131566 -25248955 + AT_rich Low_complexity Low_complexity 1 22 0 1193 257 29 9 chr15 76132105 76132455 -25248066 - L1ME1 LINE L1 -5 6161 5805 3850 241 70 35 chr15 76132707 76134084 -25246437 - L1MEc LINE L1 -4970 1426 1 2136 122 0 0 chr15 76134202 76134506 -25246015 - AluSx SINE Alu -8 304 1 488 279 16 8 chr15 76134757 76134879 -25245642 + L2 LINE L2 3191 3313 0 765 265 75 78 chr15 76134882 76135172 -25245349 - L1ME1 LINE L1 -344 5818 5523 2049 84 3 30 chr15 76135172 76135469 -25245052 + AluSx SINE Alu 5 293 -19 765 265 75 78 chr15 76135469 76135596 -25244925 - L1ME1 LINE L1 -639 5523 5397 544 223 46 85 chr15 76136037 76136342 -25244179 - L1MC5 LINE L1 -37 7924 7632 1162 214 82 69 chr15 76136358 76136420 -25244101 - L1MC5 LINE L1 -219 7742 7682 2308 70 0 7 chr15 76136420 76136718 -25243803 + AluY SINE Alu 1 296 -15 1162 214 82 69 chr15 76136718 76137118 -25243403 - L1MC5 LINE L1 -279 7682 7274 2050 111 14 0 chr15 76137288 76137585 -25242936 - AluSx SINE Alu -11 301 1 1204 201 54 22 chr15 76138371 76138649 -25241872 - L1ME3A LINE L1 -5 6165 5879 696 202 31 0 chr15 76138709 76138838 -25241683 - FLAM_A SINE Alu 0 133 1 2101 84 53 0 chr15 76138860 76139144 -25241377 - AluSp SINE Alu -14 299 1 2239 181 10 30 chr15 76139196 76139600 -25240921 - MSTD LTR MaLR 0 396 1 2166 84 0 0 chr15 76139952 76140256 -25240265 + AluY SINE Alu 1 304 0 320 281 58 8 chr15 76142711 76142832 -25237689 + MARNA DNA Mariner 396 522 -64 1366 201 10 23 chr15 76142929 76143228 -25237293 + AluJb SINE Alu 1 295 -17 1760 179 7 0 chr15 76143391 76143698 -25236823 - AluJb SINE Alu -2 310 2 49 52 0 0 chr15 76144434 76144511 -25236010 + AT_rich Low_complexity Low_complexity 1 77 0 611 253 89 18 chr15 76145114 76145339 -25235182 + MIR SINE MIR 22 262 0 1719 150 33 0 chr15 76145595 76145868 -25234653 + AluJo SINE Alu 1 282 -30 363 45 0 0 chr15 76146020 76146064 -25234457 - AluJ/F(R)AM SINE Alu -107 204 161 564 204 0 0 chr15 76146064 76146167 -25234354 + AluJo/FRAM SINE Alu 207 309 -3 365 164 0 27 chr15 76146174 76146247 -25234274 + L1MEc LINE L1 1863 1933 -4463 892 147 0 7 chr15 76146251 76146387 -25234134 - AluJo SINE Alu -177 135 1 419 278 76 25 chr15 76146387 76146585 -25233936 - L1MEc LINE L1 -4531 1865 1658 28 0 0 0 chr15 76146653 76146681 -25233840 + AT_rich Low_complexity Low_complexity 1 28 0 24358 26 4 0 chr15 76146681 76150313 -25230208 - L1PA3 LINE L1 -3 6152 2511 1504 22 0 0 chr15 76150313 76150493 -25230028 + L1PA3 LINE L1 2340 2519 -3627 881 259 98 46 chr15 76150489 76151037 -25229484 - L1MEc LINE L1 -4671 1725 1149 * 821 290 98 29 chr15 76151032 76151442 -25229079 - L1MEc LINE L1 -5707 689 252 * 248 154 19 0 chr15 76151442 76151494 -25229027 + CT-rich Low_complexity Low_complexity 1 53 0 473 245 48 7 chr15 76151500 76151647 -25228874 - L1MEc LINE L1 -6123 273 121 1282 155 12 48 chr15 76152031 76152283 -25228238 + AluJo SINE Alu 1 243 -69 193 29 59 0 chr15 76152302 76152336 -25228185 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 314 317 59 0 chr15 76152461 76152562 -25227959 - L1MC4a LINE L1 -1547 6261 6155 715 190 0 0 chr15 76152636 76152752 -25227769 - FLAM_A SINE Alu -17 116 1 591 248 86 98 chr15 76152769 76152927 -25227594 - L1MC4a LINE L1 -1639 6169 6011 2033 103 41 0 chr15 76152927 76153219 -25227302 - AluSx SINE Alu -8 304 1 591 248 86 98 chr15 76153219 76153479 -25227042 - L1MC4a LINE L1 -1797 6011 5756 2309 78 7 0 chr15 76154722 76155029 -25225492 + AluY SINE Alu 1 309 -2 605 285 77 37 chr15 76155149 76155447 -25225074 - MLT1L LTR MaLR -304 311 2 303 28 0 0 chr15 76156663 76156699 -25223822 + (TG)n Simple_repeat Simple_repeat 1 36 0 1960 133 0 16 chr15 76157913 76158230 -25222291 + AluSx SINE Alu 1 312 0 614 202 101 0 chr15 76158347 76158476 -25222045 - MIR SINE MIR -71 191 50 2232 236 87 57 chr15 76159065 76159548 -25220973 - L1MC4a LINE L1 -1170 4976 4509 1763 139 7 17 chr15 76159548 76159872 -25220649 - AluJb SINE Alu 0 321 1 2232 236 87 57 chr15 76159872 76160304 -25220217 - L1MC4a LINE L1 -1637 4509 4032 796 95 0 60 chr15 76160325 76160441 -25220080 + FLAM_C SINE Alu 19 127 -16 268 263 12 0 chr15 76160462 76160542 -25219979 - L1MC4a LINE L1 -2115 4031 3951 254 279 90 41 chr15 76161063 76161185 -25219336 + L2 LINE L2 3137 3264 -8 957 221 48 14 chr15 76161410 76161618 -25218903 + MIR SINE MIR 7 221 -41 2325 78 3 0 chr15 76163146 76163452 -25217069 - AluSx SINE Alu -5 307 1 1584 183 105 17 chr15 76164202 76164563 -25215958 - MLT1F1 LTR MaLR 0 567 175 431 230 137 22 chr15 76164721 76164860 -25215661 - MLT1F1 LTR MaLR -383 159 5 201 244 0 0 chr15 76166307 76166348 -25214173 + GA-rich Low_complexity Low_complexity 5 45 0 200 273 36 0 chr15 76167680 76167735 -25212786 + MIR SINE MIR 90 146 -116 1202 146 0 0 chr15 76168000 76168185 -25212336 - AluSg/x SINE Alu -3 309 125 761 167 40 0 chr15 76168242 76168368 -25212153 - FLAM_A SINE Alu 0 133 3 1944 152 19 0 chr15 76168700 76169022 -25211499 + L1MB3 LINE L1 5849 6176 -7 659 245 103 5 chr15 76169154 76169358 -25211163 + MIR SINE MIR 39 262 0 2168 100 0 0 chr15 76169584 76169874 -25210647 + AluSx SINE Alu 1 290 -22 196 269 43 6 chr15 76169880 76169963 -25210558 - MIR SINE MIR -107 101 16 1656 183 0 0 chr15 76170527 76170834 -25209687 + AluJo SINE Alu 1 307 0 2161 101 3 3 chr15 76171024 76171320 -25209201 + AluSx SINE Alu 1 296 -16 1335 221 28 0 chr15 76171573 76171863 -25208658 + L1MC4 LINE L1 6763 7060 -982 2091 109 13 10 chr15 76171864 76172167 -25208354 + AluSx SINE Alu 1 304 -8 261 292 28 0 chr15 76172204 76172276 -25208245 + GA-rich Low_complexity Low_complexity 1 74 0 687 130 0 57 chr15 76172276 76172399 -25208122 + L1MC4 LINE L1 7921 8036 -6 2225 109 0 0 chr15 76173670 76173982 -25206539 + AluSx SINE Alu 1 312 0 298 252 153 9 chr15 76174444 76174555 -25205966 - MIR SINE MIR -88 174 48 358 329 75 33 chr15 76175271 76175484 -25205037 - MIR SINE MIR -18 244 23 2023 100 14 0 chr15 76175500 76175781 -25204740 + AluSx SINE Alu 16 300 -12 27 61 0 15 chr15 76175841 76175869 -25204652 + AT_rich Low_complexity Low_complexity 1 28 -37 1767 129 10 30 chr15 76175869 76176164 -25204357 + AluJo SINE Alu 1 289 -23 27 61 0 15 chr15 76176164 76176201 -25204320 + AT_rich Low_complexity Low_complexity 28 65 0 2006 110 0 14 chr15 76176667 76176958 -25203563 - AluSx SINE Alu -25 287 1 1572 109 38 115 chr15 76177193 76177533 -25202988 + L1MB7 LINE L1 5826 6139 -45 245 156 0 22 chr15 76177534 76177579 -25202942 + Alu SINE Alu 1 44 -256 1310 150 14 18 chr15 76177679 76177899 -25202622 - AluSx SINE Alu -93 219 1 339 302 54 34 chr15 76178148 76178297 -25202224 + MIR SINE MIR 109 260 -2 450 171 37 6 chr15 76178896 76179020 -25201501 + L1MC4 LINE L1 7805 8033 -9 571 311 89 13 chr15 76181699 76181934 -25198587 - MIR SINE MIR -2 260 8 254 206 71 109 chr15 76182080 76182264 -25198257 - L1MC5 LINE L1 -13 7948 7772 2357 84 0 0 chr15 76182275 76182586 -25197935 - AluY SINE Alu 0 311 1 353 253 10 10 chr15 76182588 76182687 -25197834 - L1MC5 LINE L1 -176 7785 7687 582 200 0 40 chr15 76182772 76182897 -25197624 - FLAM_A SINE Alu -17 125 6 514 324 52 4 chr15 76182908 76183180 -25197341 - L1ME LINE L1 -353 5809 5525 1666 237 132 40 chr15 76183185 76183737 -25196784 - MLT1E2 LTR MaLR 0 626 24 345 295 95 25 chr15 76183896 76184137 -25196384 - L1ME LINE L1 -1092 5054 4797 284 119 24 0 chr15 76185072 76185114 -25195407 - LTR8A LTR ERV1 0 727 685 * 1811 188 6 28 chr15 76185109 76185256 -25195265 - Charlie1b DNA MER1_type -2405 356 207 1710 91 116 11 chr15 76185256 76185531 -25194990 + AluSc SINE Alu 1 304 -5 1811 188 6 28 chr15 76185531 76185740 -25194781 - Charlie1b DNA MER1_type -2554 207 8 1933 135 3 3 chr15 76186124 76186412 -25194109 - AluJb SINE Alu -24 288 1 468 225 159 0 chr15 76186717 76186855 -25193666 - L2 LINE L2 -705 2609 2450 221 274 0 0 chr15 76187369 76187420 -25193101 - L2 LINE L2 0 3313 3263 282 56 0 0 chr15 76187495 76187531 -25192990 + (GA)n Simple_repeat Simple_repeat 1 36 0 1745 124 0 4 chr15 76187871 76188138 -25192383 + AluY SINE Alu 44 309 -2 2093 82 0 0 chr15 76188225 76188495 -25192026 + AluSq SINE Alu 43 312 -1 189 107 0 0 chr15 76188495 76188523 -25191998 + (TA)n Simple_repeat Simple_repeat 2 29 0 881 112 8 22 chr15 76188998 76189132 -25191389 + FLAM_C SINE Alu 2 133 0 751 177 46 51 chr15 76190440 76190615 -25189906 - FAM SINE Alu 0 49 1 957 185 12 0 chr15 76192215 76192377 -25188144 - FAM SINE Alu -11 164 1 452 296 41 51 chr15 76192377 76192529 -25187992 - MIR3 SINE MIR -55 153 1 286 218 134 42 chr15 76192631 76192773 -25187748 - L1ME4a LINE L1 -3 6118 5964 1952 98 45 14 chr15 76192936 76193223 -25187298 - AluSp SINE Alu -17 296 1 854 186 114 38 chr15 76193648 76193858 -25186663 + AluJo SINE Alu 84 309 -3 461 174 65 0 chr15 76193929 76194021 -25186500 + L2 LINE L2 3195 3292 -21 2335 86 3 0 chr15 76194300 76194602 -25185919 + AluSp SINE Alu 1 303 -10 2313 91 3 0 chr15 76194602 76194910 -25185611 + AluSq SINE Alu 1 309 -4 526 200 0 52 chr15 76195005 76195120 -25185401 + AluJo SINE Alu 84 192 -120 243 205 96 36 chr15 76195154 76195237 -25185284 - MIR SINE MIR -58 204 117 261 152 43 0 chr15 76195380 76195426 -25185095 - Alu SINE Alu -6 294 247 1130 201 59 28 chr15 76195580 76195869 -25184652 - AluJo SINE Alu -4 298 1 288 212 197 23 chr15 76195967 76196099 -25184422 - MIR3 SINE MIR -49 159 5 574 270 63 6 chr15 76196473 76196647 -25183874 - MIR SINE MIR -48 214 32 197 268 54 0 chr15 76196785 76196841 -25183680 + MIR SINE MIR 41 99 -109 * 442 322 59 0 chr15 76196837 76196989 -25183532 + MIR3 SINE MIR 30 190 -18 221 268 247 31 chr15 76198063 76198160 -25182361 - L2 LINE L2 -20 3293 3176 853 210 125 29 chr15 76198183 76198455 -25182066 - AluJo SINE Alu -4 298 1 361 237 34 34 chr15 76198463 76198475 -25182046 - L1MA10 LINE L1 -2 6332 6321 761 243 63 0 chr15 76198475 76198664 -25181857 - L1ME1 LINE L1 -5 6161 5961 332 376 81 17 chr15 76198664 76198898 -25181623 - L2 LINE L2 -1 3271 3023 2027 122 0 0 chr15 76199773 76200059 -25180462 + AluSx SINE Alu 1 286 -26 229 243 10 36 chr15 76200202 76200316 -25180205 - MIR SINE MIR -71 191 13 289 264 135 27 chr15 76200576 76200724 -25179797 - L3 LINE CR1 -330 1247 1084 2053 119 0 3 chr15 76200880 76201182 -25179339 + AluSx SINE Alu 1 301 -11 2177 90 0 3 chr15 76201422 76201722 -25178799 + AluSg1 SINE Alu 1 299 -10 2034 132 0 0 chr15 76201726 76202030 -25178491 + AluSg SINE Alu 1 304 -6 38 0 0 0 chr15 76202120 76202158 -25178363 + AT_rich Low_complexity Low_complexity 1 38 0 499 266 36 69 chr15 76202188 76202492 -25178029 + L1ME LINE L1 5530 5823 -298 1759 156 20 0 chr15 76202496 76202791 -25177730 + AluJo SINE Alu 1 301 -11 799 57 9 0 chr15 76202794 76202900 -25177621 - AluY SINE Alu -19 292 186 2271 73 3 0 chr15 76203000 76203301 -25177220 - AluY SINE Alu -9 302 1 1329 256 187 8 chr15 76203448 76203956 -25176565 + L2 LINE L2 2376 2974 -340 1724 180 32 0 chr15 76203972 76204283 -25176238 - L1MB7 LINE L1 -169 6015 5695 209 258 101 44 chr15 76204988 76205147 -25175374 + L2 LINE L2 2305 2472 -842 332 327 9 9 chr15 76205150 76205263 -25175258 - L2 LINE L2 -2 3311 3199 1241 148 55 12 chr15 76205264 76205521 -25175000 - MER20B DNA MER1_type -1 782 515 296 193 0 0 chr15 76205631 76205688 -25174833 - MER20B DNA MER1_type -275 508 452 1312 155 0 0 chr15 76205726 76205932 -25174589 - AluJo SINE Alu -106 206 1 1227 297 72 2 chr15 76205988 76206389 -25174132 - MER20B DNA MER1_type -342 441 13 192 284 256 10 chr15 76207200 76207299 -25173222 + MIR SINE MIR 41 159 -62 1870 148 171 3 chr15 76207395 76207752 -25172769 + MSTB LTR MaLR 1 417 -9 1564 106 0 98 chr15 76208206 76208481 -25172040 + AluSq SINE Alu 1 248 -65 2000 114 24 10 chr15 76209138 76209260 -25171261 + AluJb SINE Alu 7 126 -186 2149 117 7 0 chr15 76209260 76209568 -25170953 + AluSx SINE Alu 1 310 -2 2000 114 24 10 chr15 76209568 76209735 -25170786 + AluJb SINE Alu 126 300 -12 2336 63 0 3 chr15 76211212 76211513 -25169008 - AluY SINE Alu -11 300 1 1636 162 3 21 chr15 76211651 76211941 -25168580 - AluJo SINE Alu -15 297 13 373 188 188 78 chr15 76212656 76212927 -25167594 - LTR16B LTR ERVL -163 301 1 646 241 229 9 chr15 76213269 76213605 -25166916 + LTR33A LTR ERVL 106 515 -8 314 309 27 27 chr15 76214475 76214585 -25165936 - MIR SINE MIR -107 155 46 661 279 40 15 chr15 76215079 76215280 -25165241 + MIR SINE MIR 57 262 0 429 275 56 7 chr15 76215379 76215521 -25165000 - L1ME4a LINE L1 -8 6113 5965 374 238 84 28 chr15 76215558 76215701 -25164820 - L1ME4a LINE L1 -227 5894 5744 425 228 158 0 chr15 76215854 76215981 -25164540 - L2 LINE L2 -1 3271 3125 920 171 7 0 chr15 76216284 76216424 -25164097 - MER8 DNA MER2_type 0 239 99 359 231 48 10 chr15 76216532 76216636 -25163885 - MER112 DNA MER1_type -96 164 57 204 295 139 8 chr15 76216910 76217032 -25163489 + L2 LINE L2 3114 3251 -21 586 186 109 51 chr15 76217075 76217231 -25163290 - MIR SINE MIR -70 192 28 213 83 111 0 chr15 76217245 76217281 -25163240 + L2 LINE L2 3230 3269 -3 601 220 0 0 chr15 76218464 76218573 -25161948 + FLAM_A SINE Alu 1 109 -33 1940 131 7 10 chr15 76218724 76219030 -25161491 + AluY SINE Alu 1 305 -6 354 241 0 23 chr15 76219839 76219926 -25160595 - L2 LINE L2 -1 3271 3187 427 249 109 0 chr15 76222484 76222684 -25157837 - MIR SINE MIR -33 229 4 224 186 51 0 chr15 76227221 76227280 -25153241 + MIR SINE MIR 84 145 -117 615 80 23 23 chr15 76228412 76228500 -25152021 - AluSp SINE Alu -163 150 63 1391 217 111 65 chr15 76228501 76228638 -25151883 + L1MC5 LINE L1 7112 7241 -720 2275 97 3 3 chr15 76228638 76228947 -25151574 + AluSc SINE Alu 1 309 0 1391 217 111 65 chr15 76228947 76229394 -25151127 + L1MC5 LINE L1 7241 7723 -238 1655 171 0 29 chr15 76229408 76229723 -25150798 - AluJb SINE Alu 0 312 7 232 171 43 43 chr15 76230464 76230534 -25149987 - MLT1K LTR MaLR 0 588 519 640 67 17 108 chr15 76230580 76230635 -25149886 - L1PB2 LINE L1 0 6151 6111 2032 113 17 3 chr15 76230635 76230935 -25149586 - AluSx SINE Alu -7 305 2 640 67 17 108 chr15 76230935 76230999 -25149522 - L1PB2 LINE L1 -40 6111 6043 1881 127 29 35 chr15 76231004 76231318 -25149203 + AluJo SINE Alu 1 312 0 1766 126 17 30 chr15 76231892 76232193 -25148328 - AluSx SINE Alu -15 297 1 1269 176 27 82 chr15 76232225 76232420 -25148101 - AluJo SINE Alu 0 312 141 1589 131 0 0 chr15 76232420 76232649 -25147872 - AluSx SINE Alu -83 229 1 1269 176 27 82 chr15 76232649 76232783 -25147738 - AluJo SINE Alu -171 141 1 1893 178 40 9 chr15 76232783 76233132 -25147389 - L1MB8 LINE L1 -9 6169 5810 227 373 82 0 chr15 76233240 76233374 -25147147 - L2 LINE L2 -493 2821 2677 2249 114 0 0 chr15 76234045 76234352 -25146169 - AluSq SINE Alu -6 307 1 3782 108 4 4 chr15 76235297 76235808 -25144713 + MER9 LTR ERVK 1 511 0 668 241 71 90 chr15 76235823 76236046 -25144475 - MER102b DNA MER1_type -1111 317 100 735 271 191 36 chr15 76236046 76236496 -25144025 + LTR33 LTR ERVL 1 520 -1 668 241 71 90 chr15 76236496 76236595 -25143926 - MER102b DNA MER1_type -1328 100 1 192 182 55 36 chr15 76237706 76237761 -25142760 + MIR3 SINE MIR 146 201 -7 185 81 0 54 chr15 76237954 76237991 -25142530 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2098 115 7 7 chr15 76238279 76238574 -25141947 - AluSx SINE Alu -17 295 1 308 233 67 42 chr15 76239706 76239826 -25140695 - MIR3 SINE MIR -9 199 77 1823 107 63 27 chr15 76240011 76240311 -25140210 - AluJo SINE Alu -1 311 1 1873 107 19 0 chr15 76240490 76240753 -25139768 - AluSx SINE Alu -17 295 28 206 121 0 0 chr15 76241668 76241701 -25138820 + (CA)n Simple_repeat Simple_repeat 2 34 0 1624 106 37 12 chr15 76241815 76242060 -25138461 - AluSx SINE Alu -1 311 61 21 0 0 0 chr15 76242565 76242586 -25137935 + AT_rich Low_complexity Low_complexity 1 21 0 471 270 11 63 chr15 76244002 76244176 -25136345 - MIR3 SINE MIR -29 179 15 210 170 21 21 chr15 76244530 76244577 -25135944 + (CGG)n Simple_repeat Simple_repeat 2 48 0 205 225 28 28 chr15 76244650 76244721 -25135800 + C-rich Low_complexity Low_complexity 4 74 0 339 248 92 20 chr15 76244825 76244978 -25135543 + L1MC5 LINE L1 7767 7930 -31 781 180 0 136 chr15 76246097 76246227 -25134294 + MER45A DNA AcHobo 1 94 -1487 2160 116 0 0 chr15 76246227 76246530 -25133991 - AluY SINE Alu -8 303 1 781 180 0 136 chr15 76246530 76246605 -25133916 + MER45A DNA AcHobo 94 178 0 1659 157 7 0 chr15 76247160 76247434 -25133087 - AluJb SINE Alu -22 290 15 1957 116 3 3 chr15 76247620 76247943 -25132578 + AluSx SINE Alu 1 323 0 197 320 82 25 chr15 76248092 76248214 -25132307 - L2 LINE L2 -5 3267 3139 312 308 22 60 chr15 76248501 76248679 -25131842 - L2 LINE L2 -563 2751 2581 414 266 29 46 chr15 76248679 76248862 -25131659 + MER5A DNA MER1_type 1 169 -9 1053 329 107 29 chr15 76248887 76249329 -25131192 - L2 LINE L2 -818 2496 2090 1982 133 3 0 chr15 76249329 76249622 -25130899 + AluSx SINE Alu 1 294 -18 1053 329 107 29 chr15 76249622 76250089 -25130432 - L2 LINE L2 -1224 2090 1516 2004 145 6 6 chr15 76250789 76251100 -25129421 + AluSx SINE Alu 2 312 0 335 343 97 37 chr15 76251104 76251539 -25128982 - L2 LINE L2 -556 2758 2298 1342 97 0 173 chr15 76252062 76252351 -25128170 + AluSx SINE Alu 63 301 -11 438 167 77 0 chr15 76252351 76252429 -25128092 + AluSc SINE Alu 132 215 -94 2257 82 7 0 chr15 76252435 76252728 -25127793 - AluSq SINE Alu -17 296 2 435 285 117 73 chr15 76252763 76253121 -25127400 - L2 LINE L2 0 3272 2899 2409 60 0 0 chr15 76253774 76254073 -25126448 - AluY SINE Alu 0 311 13 875 253 67 0 chr15 76254191 76254416 -25126105 - MIR SINE MIR -3 259 20 363 288 62 44 chr15 76254568 76254728 -25125793 + MIR SINE MIR 44 206 -56 531 227 216 10 chr15 76254847 76255041 -25125480 - MIR SINE MIR -10 252 19 324 264 101 20 chr15 76255541 76255689 -25124832 + Charlie8 DNA MER1_type 42 201 -2216 1904 162 37 83 chr15 76255691 76256098 -25124423 + MLT1B LTR MaLR 1 388 -2 593 177 191 7 chr15 76256491 76256632 -25123889 + MER5A DNA MER1_type 16 182 -7 682 267 35 0 chr15 76256634 76256806 -25123715 - MER5B DNA MER1_type 0 178 1 304 197 16 0 chr15 76257086 76257147 -25123374 - MIR SINE MIR -89 119 58 423 259 41 68 chr15 76257589 76257737 -25122784 + MIR SINE MIR 3 147 -61 2385 62 7 3 chr15 76257739 76258043 -25122478 - AluY SINE Alu -4 307 3 1991 134 0 3 chr15 76258054 76258344 -25122177 - AluSx SINE Alu -23 289 1 386 148 0 0 chr15 76258561 76258622 -25121899 - MER46C DNA MER2_type 0 338 278 1806 173 0 0 chr15 76258627 76258961 -25121560 - AluSx SINE Alu 0 334 1 489 211 193 6 chr15 76258991 76259162 -25121359 - MER46C DNA MER2_type -134 204 2 225 119 0 0 chr15 76259625 76259667 -25120854 + (TG)n Simple_repeat Simple_repeat 1 42 0 497 88 0 99 chr15 76259922 76260013 -25120508 + MER81 DNA DNA 1 82 -32 561 262 104 25 chr15 76260912 76261114 -25119407 - MIR SINE MIR -12 250 33 326 278 76 56 chr15 76261161 76261305 -25119216 + L2 LINE L2 3123 3269 -3 196 333 114 9 chr15 76262929 76263043 -25117478 + MIR3 SINE MIR 13 138 -70 777 177 35 7 chr15 76263133 76263274 -25117247 + FRAM SINE Alu 1 40 0 362 192 238 13 chr15 76263285 76263436 -25117085 - MIR3 SINE MIR -7 201 17 198 240 112 32 chr15 76263888 76264013 -25116508 + L2 LINE L2 2725 2859 -455 361 304 128 42 chr15 76264041 76264354 -25116167 + L2 LINE L2 2931 3270 -2 275 324 9 19 chr15 76265367 76265472 -25115049 + MIR SINE MIR 45 148 -60 181 390 32 0 chr15 76266218 76266341 -25114180 - L3 LINE CR1 -350 1227 1101 24 0 0 0 chr15 76266354 76266378 -25114143 + AT_rich Low_complexity Low_complexity 1 24 0 455 318 34 25 chr15 76266567 76266888 -25113633 + L1M4 LINE L1 4524 4847 -1299 517 253 5 50 chr15 76267020 76267218 -25113303 - L1ME LINE L1 -321 5800 5612 704 0 0 40 chr15 76267295 76267395 -25113126 + (TTCA)n Simple_repeat Simple_repeat 1 96 0 309 320 40 0 chr15 76267602 76267752 -25112769 - L2 LINE L2 -468 2846 2691 290 370 22 15 chr15 76268065 76268200 -25112321 + MIR3 SINE MIR 47 182 -26 367 284 28 9 chr15 76268981 76269090 -25111431 - MIR SINE MIR -78 130 20 1648 158 70 0 chr15 76269262 76269535 -25110986 - AluJo SINE Alu -15 297 6 200 342 72 9 chr15 76269678 76269789 -25110732 + MIR SINE MIR 30 147 -61 295 330 89 0 chr15 76269829 76269941 -25110580 - MIR SINE MIR -12 250 129 825 163 7 0 chr15 76269941 76270076 -25110445 + AluJo SINE Alu 1 136 -176 180 270 203 0 chr15 76270089 76270163 -25110358 - MIR SINE MIR -125 137 49 255 359 67 5 chr15 76271179 76271374 -25109147 - L3 LINE CR1 -90 1487 1281 272 159 0 0 chr15 76272026 76272070 -25108451 - LTR16C LTR ERVL 0 491 448 267 348 25 19 chr15 76272288 76272449 -25108072 - LTR16C LTR ERVL 0 491 330 1985 118 7 20 chr15 76272872 76273168 -25107353 + AluJo SINE Alu 1 292 -20 251 288 14 0 chr15 76274158 76274231 -25106290 - MER63A DNA MER1_type -8 202 129 1026 108 38 38 chr15 76274244 76274401 -25106120 + AluSg/x SINE Alu 138 294 -16 455 196 49 39 chr15 76274405 76274507 -25106014 - MER63A DNA MER1_type 0 106 4 1612 116 52 204 chr15 76274568 76274956 -25105565 + MSTD LTR MaLR 2 309 -87 2120 101 0 0 chr15 76274956 76275223 -25105298 + AluSx SINE Alu 1 267 -45 1612 116 52 204 chr15 76275223 76275299 -25105222 + MSTD LTR MaLR 309 395 -1 297 297 109 38 chr15 76275811 76275984 -25104537 + MIR SINE MIR 15 195 -62 226 254 73 0 chr15 76276048 76276103 -25104418 + L2 LINE L2 3154 3212 -60 208 97 0 32 chr15 76276391 76276422 -25104099 - MER5A DNA MER1_type -158 31 2 297 290 20 20 chr15 76276946 76277046 -25103475 + MIR SINE MIR 46 145 -117 460 182 30 30 chr15 76277165 76277264 -25103257 + Charlie7 DNA MER1_type 6 104 -2508 1747 147 3 38 chr15 76277427 76277720 -25102801 - AluJo SINE Alu -25 287 5 321 231 177 62 chr15 76277831 76277961 -25102560 + L1ME4a LINE L1 5964 6108 -13 894 160 57 95 chr15 76277961 76278223 -25102298 - L1MC5 LINE L1 -1017 6944 6693 1822 184 0 3 chr15 76278312 76278617 -25101904 + AluJo SINE Alu 1 304 -8 409 265 93 46 chr15 76279494 76279645 -25100876 + MIR3 SINE MIR 2 159 -49 453 305 7 0 chr15 76279679 76279820 -25100701 + L1MC4a LINE L1 5727 5868 -1940 312 271 178 8 chr15 76279916 76280045 -25100476 + L1ME4a LINE L1 5968 6118 -3 262 276 0 13 chr15 76280059 76280135 -25100386 - MER5B DNA MER1_type -78 100 26 232 278 19 0 chr15 76280143 76280197 -25100324 + MIR3 SINE MIR 151 205 -3 624 272 7 11 chr15 76280387 76280549 -25099972 - MIR SINE MIR -62 146 8 810 245 66 0 chr15 76280682 76280894 -25099627 - MIR SINE MIR 0 262 37 245 179 42 17 chr15 76281806 76281922 -25098599 - MER91A DNA MER1_type -16 180 1 916 270 51 20 chr15 76282009 76282421 -25098100 + MLT1K LTR MaLR 102 546 -42 496 276 6 138 chr15 76282854 76282985 -25097536 + L2 LINE L2 2917 2985 -287 1983 190 200 6 chr15 76282985 76283479 -25097042 + MLT1G LTR MaLR 1 590 0 496 276 6 138 chr15 76283479 76283658 -25096863 + L2 LINE L2 2985 3186 -86 199 272 130 11 chr15 76284138 76284230 -25096291 + L3 LINE CR1 340 442 -1135 322 267 145 0 chr15 76284407 76284538 -25095983 - MIR SINE MIR -12 250 101 306 203 63 13 chr15 76284683 76284762 -25095759 + MIR SINE MIR 39 121 -141 258 161 32 0 chr15 76285527 76285620 -25094901 + G-rich Low_complexity Low_complexity 6 101 0 184 274 191 0 chr15 76285831 76285915 -25094606 + L3 LINE CR1 343 442 -1135 322 267 145 0 chr15 76286091 76286222 -25094299 - MIR SINE MIR -12 250 101 306 203 63 13 chr15 76286367 76286446 -25094075 + MIR SINE MIR 39 121 -141 391 174 0 113 chr15 76287282 76287397 -25093124 + LTR33A LTR ERVL 409 510 -13 645 244 82 111 chr15 76287457 76287834 -25092687 - L1MC4a LINE L1 -1866 5942 5577 493 234 84 0 chr15 76287897 76288004 -25092517 + L2 LINE L2 3152 3267 -5 189 319 14 14 chr15 76288049 76288121 -25092400 + MIR SINE MIR 59 130 -132 1307 251 81 29 chr15 76288272 76288682 -25091839 + LTR16A LTR ERVL 20 450 0 1610 145 36 63 chr15 76288712 76289015 -25091506 - AluJo SINE Alu -12 300 6 2017 131 47 0 chr15 76289051 76289348 -25091173 - AluSq SINE Alu -2 311 1 1622 191 38 52 chr15 76289462 76289519 -25091002 - Charlie4a DNA MER1_type -1507 454 398 1862 183 3 3 chr15 76289519 76289831 -25090690 + AluJb SINE Alu 1 312 0 1622 191 38 52 chr15 76289831 76289935 -25090586 - Charlie4a DNA MER1_type -1563 398 294 2311 104 7 3 chr15 76289935 76290233 -25090288 + AluSx SINE Alu 1 299 -13 1622 191 38 52 chr15 76290233 76290514 -25090007 - Charlie4a DNA MER1_type -1667 294 17 346 267 66 47 chr15 76291255 76291407 -25089114 + MIR SINE MIR 26 177 -58 404 269 96 30 chr15 76291504 76291671 -25088850 + MER91A DNA MER1_type 2 179 -17 2311 174 85 19 chr15 76292214 76292686 -25087835 + MLT1D LTR MaLR 3 505 0 888 231 12 0 chr15 76292842 76293015 -25087506 - FAM SINE Alu 0 175 1 379 292 81 43 chr15 76293090 76293202 -25087319 - MER5B DNA MER1_type -1 177 56 1701 162 3 21 chr15 76293202 76293492 -25087029 - AluJb SINE Alu -1 311 27 379 292 81 43 chr15 76293492 76293540 -25086981 - MER5B DNA MER1_type -122 56 11 921 200 106 90 chr15 76293540 76293995 -25086526 - LTR37B LTR ERV1 0 468 7 187 339 185 23 chr15 76294083 76294213 -25086308 - L2 LINE L2 -1 3271 3121 2235 114 7 13 chr15 76294349 76294657 -25085864 - AluSx SINE Alu 0 312 7 448 370 26 0 chr15 76296206 76296395 -25084126 - L3 LINE CR1 -142 1435 1242 268 122 0 0 chr15 76297839 76297880 -25082641 - AluJb SINE Alu -261 41 1 1358 112 35 4 chr15 76297882 76298114 -25082407 + MER6 DNA MER2_type 545 783 -82 761 129 113 8 chr15 76298115 76298239 -25082282 + AluJb SINE Alu 2 138 -174 452 195 11 0 chr15 76298240 76298327 -25082194 + MER6 DNA MER2_type 778 865 0 778 167 32 39 chr15 76298356 76298512 -25082009 + AluJb SINE Alu 41 195 -117 1287 166 143 79 chr15 76298653 76298736 -25081785 - MLT1A1 LTR MaLR 0 365 289 1791 179 3 22 chr15 76298736 76299054 -25081467 - AluJb SINE Alu 0 312 1 1287 166 143 79 chr15 76299054 76299313 -25081208 - MLT1A1 LTR MaLR -76 289 1 357 266 213 12 chr15 76299363 76299531 -25080990 - MIR SINE MIR -31 231 38 381 279 107 49 chr15 76299690 76300120 -25080401 + L1ME1 LINE L1 5699 6153 -13 1099 158 0 6 chr15 76300120 76300291 -25080230 - AluSg/x SINE Alu -10 302 133 278 284 34 0 chr15 76300417 76300505 -25080016 - L1ME LINE L1 -493 5628 5538 711 139 70 0 chr15 76300541 76300656 -25079865 - FRAM SINE Alu -11 165 43 796 170 7 54 chr15 76301093 76301240 -25079281 - AluJo SINE Alu -171 141 2 385 272 277 47 chr15 76301675 76302098 -25078423 + L2 LINE L2 1324 1843 -1471 866 256 335 13 chr15 76302259 76302696 -25077825 + L2 LINE L2 1839 2134 -1180 2196 103 3 53 chr15 76302696 76303016 -25077505 + AluSx SINE Alu 1 304 -8 866 256 335 13 chr15 76303016 76303439 -25077082 + L2 LINE L2 2134 2976 -338 499 226 26 17 chr15 76303501 76303616 -25076905 + L2 LINE L2 3192 3307 -6 1243 158 5 0 chr15 76304458 76304642 -25075879 + AluSg/x SINE Alu 109 293 -17 2034 113 0 3 chr15 76305227 76305546 -25074975 - AluSx SINE Alu 0 318 1 2150 183 87 145 chr15 76305888 76306423 -25074098 - LTR8A LTR ERV1 0 727 248 1953 149 0 10 chr15 76306423 76306732 -25073789 - AluSx SINE Alu 0 306 1 2150 183 87 145 chr15 76306732 76306967 -25073554 - LTR8A LTR ERV1 -479 248 1 775 163 84 24 chr15 76307321 76307487 -25073034 - L2 LINE L2 -5 3308 3133 747 260 109 43 chr15 76307708 76308131 -25072390 - LTR1B LTR ERV1 -328 498 48 1122 251 162 9 chr15 76308151 76308632 -25071889 - L2 LINE L2 -177 3136 2575 531 45 0 0 chr15 76308634 76308700 -25071821 + (TG)n Simple_repeat Simple_repeat 1 66 0 1774 178 3 17 chr15 76308701 76308993 -25071528 - AluJo SINE Alu -24 288 1 307 323 0 10 chr15 76309151 76309250 -25071271 - MARNA DNA Mariner -397 189 92 1297 154 142 20 chr15 76309250 76309497 -25071024 + AluJb SINE Alu 1 277 -35 232 300 144 31 chr15 76309807 76309967 -25070554 + MIR3 SINE MIR 30 207 -1 340 320 88 28 chr15 76310261 76310442 -25070079 + MIR SINE MIR 59 250 -12 1797 177 0 25 chr15 76310451 76310767 -25069754 - AluJb SINE Alu -1 311 4 211 320 47 51 chr15 76310900 76311085 -25069436 - L2 LINE L2 -317 2955 2767 2304 105 0 0 chr15 76311575 76311871 -25068650 - AluSx SINE Alu -16 296 1 794 140 168 0 chr15 76311897 76312040 -25068481 - FRAM SINE Alu -7 169 3 234 0 0 0 chr15 76312041 76312067 -25068454 + (TC)n Simple_repeat Simple_repeat 2 27 0 207 0 0 0 chr15 76312066 76312089 -25068432 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 30 0 0 0 chr15 76312106 76312136 -25068385 + AT_rich Low_complexity Low_complexity 1 30 0 221 161 32 32 chr15 76312157 76312250 -25068271 + (TA)n Simple_repeat Simple_repeat 1 93 0 860 153 0 0 chr15 76312250 76312368 -25068153 - FLAM_C SINE Alu -15 118 1 350 291 39 16 chr15 76312401 76312528 -25067993 + MIR SINE MIR 114 243 -19 283 258 50 131 chr15 76312600 76312798 -25067723 + MIR3 SINE MIR 22 203 -5 323 230 27 0 chr15 76312818 76312892 -25067629 - L2 LINE L2 -20 3252 3177 270 256 320 20 chr15 76313017 76313267 -25067254 - L2 LINE L2 -25 3247 2923 227 325 164 15 chr15 76313335 76313797 -25066724 - L2 LINE L2 -524 2790 2260 1421 106 0 0 chr15 76313941 76314121 -25066400 + AluSx SINE Alu 1 180 -132 816 207 18 0 chr15 76314120 76314284 -25066237 + AluJo/FRAM SINE Alu 137 303 -9 * 260 156 0 0 chr15 76314286 76314331 -25066190 - L1ME4a LINE L1 -1 6120 6076 40092 61 5 5 chr15 76314395 76320533 -25059988 - L1PA6 LINE L1 0 6154 13 892 145 0 0 chr15 76320551 76320682 -25059839 - FLAM_C SINE Alu 0 133 3 470 108 36 0 chr15 76320727 76320810 -25059711 + MER52C LTR ERV1 1 86 -1192 977 146 0 36 chr15 76320844 76321009 -25059512 + AluJb SINE Alu 154 312 0 209 284 0 0 chr15 76321234 76321301 -25059220 + A-rich Low_complexity Low_complexity 1 67 0 1499 165 77 4 chr15 76321745 76322018 -25058503 - AluJo SINE Alu -14 298 6 260 333 56 8 chr15 76322086 76322212 -25058309 - L2 LINE L2 -1974 1340 1209 463 263 28 30 chr15 76323222 76323387 -25057134 + MIR3 SINE MIR 9 176 -62 340 329 159 28 chr15 76323414 76323836 -25056685 - L2 LINE L2 -10 3303 2827 240 263 116 42 chr15 76323857 76323952 -25056569 - L2 LINE L2 -36 3277 3176 976 261 9 13 chr15 76324867 76325093 -25055428 + MIR SINE MIR 17 241 -21 1587 117 121 0 chr15 76326083 76326348 -25054173 - AluSq SINE Alu -15 298 2 683 282 15 15 chr15 76326360 76326562 -25053959 + L2 LINE L2 2867 3068 -245 828 152 0 15 chr15 76326562 76326694 -25053827 - FLAM_C SINE Alu -12 131 2 313 250 139 29 chr15 76326694 76326802 -25053719 + L2 LINE L2 3050 3145 -168 1836 155 3 0 chr15 76326802 76327092 -25053429 - AluJb SINE Alu -21 291 1 313 250 139 29 chr15 76327092 76327155 -25053366 + L2 LINE L2 3145 3240 -73 249 33 0 0 chr15 76327155 76327185 -25053336 + (GGAA)n Simple_repeat Simple_repeat 4 33 0 342 280 18 4 chr15 76327187 76327297 -25053224 - MIR SINE MIR -31 177 65 2056 143 3 0 chr15 76327812 76328120 -25052401 + AluSx SINE Alu 1 309 -3 253 366 70 6 chr15 76329143 76329315 -25051206 - MIR3 SINE MIR -24 184 2 2026 152 0 0 chr15 76329377 76329687 -25050834 - AluSx SINE Alu -2 310 1 776 280 17 22 chr15 76329780 76330012 -25050509 - MIR SINE MIR -29 233 3 920 209 33 0 chr15 76331108 76331290 -25049231 + MER5A DNA MER1_type 1 188 -1 426 178 0 69 chr15 76331296 76331397 -25049124 + MER5A DNA MER1_type 9 102 -87 446 281 0 8 chr15 76332124 76332245 -25048276 - MIR SINE MIR -5 257 138 192 211 99 56 chr15 76332281 76332352 -25048169 - MIR SINE MIR -116 146 73 347 71 0 0 chr15 76332363 76332405 -25048116 + 5S rRNA rRNA 1 42 -79 441 229 209 33 chr15 76332468 76332621 -25047900 + MER5A DNA MER1_type 4 183 -6 675 148 52 9 chr15 76333460 76333575 -25046946 + FLAM_C SINE Alu 8 127 -16 21 0 0 0 chr15 76333575 76333596 -25046925 + AT_rich Low_complexity Low_complexity 1 21 0 645 268 31 62 chr15 76333603 76333827 -25046694 + MIR SINE MIR 46 262 0 2326 96 0 0 chr15 76333840 76334143 -25046378 + AluSx SINE Alu 1 303 -9 291 143 18 18 chr15 76334155 76334211 -25046310 - HsTC2 DNA Tc2 -1806 92 37 389 240 20 20 chr15 76334511 76334611 -25045910 - MIR3 SINE MIR -48 160 61 2455 74 3 0 chr15 76334696 76335006 -25045515 - AluSp SINE Alu -2 311 1 1017 274 65 37 chr15 76335837 76336238 -25044283 + L1ME3 LINE L1 5474 5885 -277 2216 102 0 0 chr15 76336271 76336564 -25043957 + AluSx SINE Alu 1 293 -19 850 129 0 0 chr15 76336747 76336879 -25043642 + AluJb SINE Alu 180 311 -1 1238 160 18 18 chr15 76337200 76337419 -25043102 + MER20 DNA MER1_type 1 219 0 671 233 13 19 chr15 76337455 76337614 -25042907 + MIR SINE MIR 94 251 -11 1708 139 99 0 chr15 76337714 76337987 -25042534 + AluSx SINE Alu 1 300 -12 2024 120 0 0 chr15 76338086 76338416 -25042105 + AluSx SINE Alu 1 330 0 301 140 0 53 chr15 76338431 76338488 -25042033 + HsTC2 DNA Tc2 32 85 -1813 280 235 0 19 chr15 76338536 76338627 -25041894 + HsTC2 DNA Tc2 1309 1571 -327 260 288 0 0 chr15 76338629 76338695 -25041826 + MER52A LTR ERV1 2 67 -1688 3389 205 136 44 chr15 76339052 76340497 -25040024 + MER52A LTR ERV1 83 1733 -22 453 198 143 89 chr15 76340605 76340842 -25039679 + HsTC2 DNA Tc2 1609 1858 -40 760 258 28 32 chr15 76340842 76341059 -25039462 - MIR SINE MIR -25 237 22 326 219 125 23 chr15 76341759 76341887 -25038634 + MIR3 SINE MIR 3 143 -65 231 344 21 0 chr15 76342334 76342427 -25038094 - MIR SINE MIR -83 125 31 249 364 34 0 chr15 76342518 76342606 -25037915 + MIR SINE MIR 118 208 -54 250 219 27 14 chr15 76342773 76342846 -25037675 + L1MC/D LINE L1 5372 5445 -2363 991 186 37 9 chr15 76342922 76343052 -25037469 + AluJo SINE Alu 1 141 -171 2466 54 0 0 chr15 76343052 76343349 -25037172 + AluY SINE Alu 1 297 -14 991 186 37 9 chr15 76343349 76343433 -25037088 + AluJo SINE Alu 141 221 -91 335 161 0 140 chr15 76343433 76343526 -25036995 + AluJo SINE Alu 87 166 -136 3615 131 56 49 chr15 76343631 76344782 -25035739 - L1MA4 LINE L1 -427 5873 4739 2109 98 0 3 chr15 76344782 76345102 -25035419 - AluSx SINE Alu 0 319 1 3615 131 56 49 chr15 76345102 76345251 -25035270 - L1MA4 LINE L1 -1561 4739 4592 34 24 0 0 chr15 76345275 76345316 -25035205 + AT_rich Low_complexity Low_complexity 1 41 0 358 165 96 22 chr15 76345316 76345407 -25035114 - FLAM_A SINE Alu -16 117 43 1359 134 36 26 chr15 76345428 76345774 -25034747 - LTR54 LTR ERV1 -86 424 8 452 246 30 148 chr15 76345781 76346078 -25034443 - MLT1K LTR MaLR -64 524 263 199 242 16 16 chr15 76346401 76346463 -25034058 + L2 LINE L2 3200 3261 -11 206 211 35 18 chr15 76346682 76346712 -25033809 + MIR SINE MIR 156 184 -78 1793 133 14 14 chr15 76346712 76347005 -25033516 - AluSx SINE Alu -15 297 5 206 211 35 18 chr15 76347005 76347031 -25033490 + MIR SINE MIR 184 213 -49 1593 157 4 8 chr15 76347042 76347310 -25033211 - AluSx SINE Alu -9 303 37 379 256 171 12 chr15 76347725 76347889 -25032632 - L2 LINE L2 0 3313 3124 188 380 74 37 chr15 76348108 76348271 -25032250 - L2 LINE L2 -459 2855 2687 2086 129 0 6 chr15 76348275 76348586 -25031935 + AluSx SINE Alu 1 309 -3 264 216 54 27 chr15 76348999 76349073 -25031448 - MIR SINE MIR -114 94 19 1976 174 64 37 chr15 76349105 76349560 -25030961 - MLT1C LTR MaLR 0 467 1 1849 148 3 3 chr15 76349787 76350097 -25030424 + AluSx SINE Alu 1 310 -2 1803 168 7 0 chr15 76350579 76350876 -25029645 + AluJo SINE Alu 1 299 -13 234 0 0 0 chr15 76350942 76350968 -25029553 + (A)n Simple_repeat Simple_repeat 1 26 0 1531 208 10 136 chr15 76350985 76351537 -25028984 + L1MC4 LINE L1 7408 7848 -194 967 198 17 0 chr15 76351537 76351709 -25028812 + FAM SINE Alu 1 175 0 1531 208 10 136 chr15 76351709 76351882 -25028639 + L1MC4 LINE L1 7848 8041 -1 1696 168 7 0 chr15 76351906 76352198 -25028323 + AluJb SINE Alu 1 294 -18 1175 213 115 49 chr15 76352333 76352490 -25028031 + L1MD2 LINE L1 5980 6125 -234 225 0 0 0 chr15 76352490 76352515 -25028006 + (CA)n Simple_repeat Simple_repeat 1 25 0 1175 213 115 49 chr15 76352515 76352704 -25027817 + L1MD2 LINE L1 6125 6349 -10 227 159 0 0 chr15 76352709 76352753 -25027768 + L1MB7 LINE L1 6132 6175 -9 615 208 8 8 chr15 76352764 76352884 -25027637 + FLAM_A SINE Alu 10 129 -13 2178 93 0 20 chr15 76353109 76353409 -25027112 + AluSg SINE Alu 1 294 -16 2251 62 3 3 chr15 76353661 76353953 -25026568 - AluY SINE Alu -19 292 1 1698 164 3 14 chr15 76353958 76354250 -25026271 - AluJo SINE Alu -23 289 1 1015 167 42 0 chr15 76354296 76354511 -25026010 + MER20B DNA MER1_type 514 737 -46 895 285 150 49 chr15 76354526 76354934 -25025587 - L2 LINE L2 -774 2540 2175 1748 170 0 7 chr15 76354934 76355223 -25025298 - AluJo SINE Alu -21 291 5 895 285 150 49 chr15 76355223 76355548 -25024973 - L2 LINE L2 -1139 2175 1733 1067 191 45 0 chr15 76357452 76357651 -25022870 - MER3 DNA MER1_type 0 209 2 739 194 0 14 chr15 76358077 76358216 -25022305 - FLAM_C SINE Alu -5 138 2 769 196 0 7 chr15 76358593 76358731 -25021790 - FLAM_C SINE Alu -5 138 2 1507 198 13 22 chr15 76358798 76359111 -25021410 - AluJo SINE Alu -2 310 1 1707 150 44 4 chr15 76360328 76360640 -25019881 - AluSx SINE Alu 0 323 1 333 320 53 0 chr15 76361064 76361214 -25019307 - MLT1J LTR MaLR -21 490 333 1631 157 99 29 chr15 76361452 76361764 -25018757 - MER44D DNA MER2_type -5 604 1 1933 158 3 0 chr15 76362080 76362390 -25018131 - AluSx SINE Alu -1 311 1 607 204 18 0 chr15 76362523 76362636 -25017885 - FRAM SINE Alu -31 145 31 358 209 101 16 chr15 76363119 76363248 -25017273 - L1ME4a LINE L1 -146 5975 5836 1976 141 0 3 chr15 76363577 76363883 -25016638 - AluSx SINE Alu -7 305 1 194 0 39 0 chr15 76364219 76364245 -25016276 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1705 147 4 0 chr15 76364251 76364516 -25016005 - AluJb SINE Alu -34 278 13 190 267 23 70 chr15 76364827 76364913 -25015608 + L3 LINE CR1 1340 1421 -156 1250 176 111 38 chr15 76365614 76365780 -25014741 - AluJo SINE Alu -2 310 157 2224 95 0 0 chr15 76365780 76366075 -25014446 - AluSx SINE Alu -14 298 4 1250 176 111 38 chr15 76366075 76366197 -25014324 - AluJo SINE Alu -155 157 1 219 88 0 0 chr15 76366574 76366608 -25013913 + (TATG)n Simple_repeat Simple_repeat 2 35 0 1854 144 0 0 chr15 76366608 76366892 -25013629 - AluSx SINE Alu -28 284 1 225 370 14 43 chr15 76367493 76367631 -25012890 - MIR3 SINE MIR -70 138 5 21 0 0 0 chr15 76367653 76367674 -25012847 + AT_rich Low_complexity Low_complexity 1 21 0 492 252 142 35 chr15 76367834 76368118 -25012403 - MER102a DNA MER1_type 0 330 1 369 233 165 27 chr15 76368677 76368905 -25011616 - LTR41 LTR ERVL 0 766 446 399 179 66 9 chr15 76369246 76369272 -25011249 + Charlie1 DNA MER1_type 2021 2044 -717 423 0 0 0 chr15 76369272 76369319 -25011202 + (TG)n Simple_repeat Simple_repeat 2 48 0 399 179 66 9 chr15 76369319 76369398 -25011123 + Charlie1 DNA MER1_type 2044 2132 -629 2093 91 0 4 chr15 76369435 76369711 -25010810 - AluSx SINE Alu -37 275 1 1053 239 91 15 chr15 76369711 76370041 -25010480 - Charlie1 DNA MER1_type -888 1873 1519 792 95 168 36 chr15 76370041 76370130 -25010391 + MER46A DNA MER2_type 1 77 -159 1652 141 98 4 chr15 76370130 76370406 -25010115 - AluSx SINE Alu -8 304 3 792 95 168 36 chr15 76370406 76370453 -25010068 + MER46A DNA MER2_type 77 155 -81 354 137 0 0 chr15 76370443 76370494 -25010027 - Charlie1 DNA MER1_type -1244 1517 1467 * 643 345 17 51 chr15 76370621 76371035 -25009486 - L2 LINE L2 -838 2476 2077 825 99 0 0 chr15 76371070 76371181 -25009340 + FLAM_C SINE Alu 1 111 -32 1770 241 17 24 chr15 76371205 76371666 -25008855 - LTR40b LTR ERVL -4 458 1 313 281 45 0 chr15 76371672 76371761 -25008760 - L2 LINE L2 -1261 2053 1961 387 329 106 36 chr15 76371881 76372379 -25008142 - L2 LINE L2 -1597 1717 1185 2574 232 50 8 chr15 76372414 76373130 -25007391 + L1MB7 LINE L1 5423 6168 -16 1729 174 17 3 chr15 76373141 76373435 -25007086 - AluJb SINE Alu -14 298 1 729 175 0 29 chr15 76373893 76374030 -25006491 + FLAM_C SINE Alu 1 133 0 194 293 17 0 chr15 76374106 76374164 -25006357 + MIR SINE MIR 154 212 -50 1022 216 83 18 chr15 76374234 76374660 -25005861 - MLT1F LTR MaLR -2 540 1 1848 161 3 26 chr15 76374822 76375126 -25005395 + AluJb SINE Alu 1 297 -15 24 32 0 0 chr15 76375174 76375205 -25005316 + AT_rich Low_complexity Low_complexity 1 31 0 449 253 61 15 chr15 76375219 76375417 -25005104 - HAL1 LINE L1 -61 2446 2240 1144 262 125 30 chr15 76375434 76376230 -25004291 - HAL1 LINE L1 -329 2178 85 188 273 165 88 chr15 76376410 76376604 -25003917 - MIR SINE MIR -6 256 48 1317 164 0 0 chr15 76376692 76376906 -25003615 + L1MC1 LINE L1 6103 6316 -17 653 154 10 0 chr15 76376916 76377020 -25003501 - AluSq/x SINE Alu -208 105 1 344 278 139 41 chr15 76377030 76377224 -25003297 + L2 LINE L2 3031 3243 -70 1294 199 75 11 chr15 76377256 76377537 -25002984 - AluJb SINE Alu -13 299 1 1596 187 80 147 chr15 76377652 76377782 -25002739 - L1MC5 LINE L1 -208 7753 7616 1989 143 0 10 chr15 76377782 76378096 -25002425 - AluSx SINE Alu -1 311 1 1596 187 80 147 chr15 76378096 76379175 -25001346 - L1MC5 LINE L1 -345 7616 6625 398 256 83 66 chr15 76379560 76379979 -25000542 + MER109 Unknown Unknown 542 1246 -1186 24 0 0 0 chr15 76380461 76380485 -25000036 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr15 76380513 76380536 -24999985 + AT_rich Low_complexity Low_complexity 1 23 0 635 215 51 11 chr15 76380554 76380731 -24999790 - L1MC5 LINE L1 -1876 5932 5749 1836 168 16 23 chr15 76381607 76381911 -24998610 + AluJb SINE Alu 6 307 -5 195 69 0 0 chr15 76381941 76381970 -24998551 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 210 167 0 0 chr15 76382384 76382420 -24998101 - L2 LINE L2 0 3313 3278 2180 123 0 3 chr15 76382619 76382928 -24997593 + AluSx SINE Alu 1 308 -4 315 0 0 0 chr15 76383362 76383397 -24997124 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5485 19 0 0 chr15 76383397 76383981 -24996540 - SVA Other Other -18 1368 785 995 99 13 0 chr15 76384094 76384245 -24996276 + MSTA LTR MaLR 28 180 -248 1771 117 0 0 chr15 76384245 76384494 -24996027 - AluSx SINE Alu 0 312 64 6086 161 9 8 chr15 76384497 76385563 -24994958 + MSTA-int LTR MaLR 582 1649 -2 2613 135 29 0 chr15 76385565 76385981 -24994540 + MSTA LTR MaLR 1 428 0 242 271 146 70 chr15 76385981 76386180 -24994341 - L3 LINE CR1 -149 1428 1215 2019 155 0 7 chr15 76386186 76386489 -24994032 - AluSx SINE Alu -11 301 1 1708 90 13 34 chr15 76386502 76386736 -24993785 - AluSg/x SINE Alu -7 303 75 24 0 0 0 chr15 76386939 76386963 -24993558 + AT_rich Low_complexity Low_complexity 1 24 0 605 206 71 16 chr15 76386975 76387101 -24993420 + FLAM_A SINE Alu 1 133 0 192 206 16 63 chr15 76387683 76387746 -24992775 - L2 LINE L2 -698 2616 2557 * 275 309 0 0 chr15 76387736 76387804 -24992717 + MIR SINE MIR 79 146 -116 2213 109 7 0 chr15 76387991 76388295 -24992226 + AluSp SINE Alu 1 306 -7 2079 128 0 13 chr15 76388346 76388651 -24991870 + AluSx SINE Alu 1 301 -11 324 176 206 0 chr15 76388734 76388836 -24991685 + L1ME4a LINE L1 5996 6118 -3 2313 170 44 51 chr15 76389217 76389782 -24990739 + L1MB8 LINE L1 5618 6178 0 215 305 197 19 chr15 76390573 76390888 -24989633 + L2 LINE L2 2591 2961 -353 239 320 188 8 chr15 76390942 76391070 -24989451 + L2 LINE L2 3121 3271 -1 1322 268 119 17 chr15 76391920 76392654 -24987867 - L2 LINE L2 0 3313 2503 1282 213 52 26 chr15 76392705 76393048 -24987473 - MER82 DNA MER2_type -6 647 296 299 173 0 0 chr15 76393039 76393091 -24987430 + AluJ/FLAM SINE Alu 23 74 -228 * 1330 291 41 53 chr15 76393215 76393259 -24987262 + L2 LINE L2 2315 2358 -956 854 176 26 13 chr15 76393259 76393412 -24987109 - FRAM SINE Alu -11 155 1 1330 291 41 53 chr15 76393412 76393876 -24986645 + L2 LINE L2 2358 2817 -497 210 383 12 0 chr15 76393866 76393947 -24986574 - L2 LINE L2 -205 3067 2986 * 264 203 159 0 chr15 76394097 76394166 -24986355 + L2 LINE L2 2289 2368 -946 595 157 0 0 chr15 76394167 76394256 -24986265 - FRAM SINE Alu -26 150 62 208 321 198 0 chr15 76394327 76394408 -24986113 + L2 LINE L2 3168 3264 -8 1832 124 38 10 chr15 76396504 76396795 -24983726 + AluSx SINE Alu 1 299 -13 2058 116 7 0 chr15 76396979 76397272 -24983249 + AluSx SINE Alu 1 295 -17 581 184 0 0 chr15 76397322 76397420 -24983101 - FLAM_C SINE Alu -9 134 37 186 71 0 0 chr15 76397420 76397448 -24983073 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 1623 196 22 0 chr15 76397448 76397723 -24982798 - AluJb SINE Alu -31 281 1 1443 161 31 34 chr15 76397821 76398113 -24982408 - AluJo SINE Alu -21 291 1 22 35 0 0 chr15 76398113 76398142 -24982379 + AT_rich Low_complexity Low_complexity 1 29 0 2307 81 3 17 chr15 76399009 76399304 -24981217 + AluSp SINE Alu 3 293 -20 34 42 0 0 chr15 76399443 76399491 -24981030 + AT_rich Low_complexity Low_complexity 1 48 0 2270 116 0 7 chr15 76400253 76400563 -24979958 - AluSx SINE Alu -1 311 4 1810 154 18 0 chr15 76400566 76400878 -24979643 - AluSx SINE Alu 0 317 1 202 320 23 39 chr15 76401580 76401708 -24978813 + MIR SINE MIR 105 230 -32 2186 145 0 0 chr15 76401926 76402236 -24978285 - AluSx SINE Alu -2 310 1 284 339 122 55 chr15 76402237 76402564 -24977957 + L2 LINE L2 2909 3257 -15 224 182 182 0 chr15 76403011 76403055 -24977466 + L2 LINE L2 3201 3252 -61 787 265 25 25 chr15 76403151 76403355 -24977166 - MIR SINE MIR -56 206 3 22 80 0 0 chr15 76404163 76404213 -24976308 + AT_rich Low_complexity Low_complexity 1 50 0 2844 16 0 0 chr15 76404343 76404656 -24975865 + AluYb8 SINE Alu 1 313 -5 218 279 49 0 chr15 76404674 76404735 -24975786 + MIR3 SINE MIR 104 167 -41 26 0 0 0 chr15 76405026 76405052 -24975469 + AT_rich Low_complexity Low_complexity 1 26 0 453 229 35 28 chr15 76405072 76405147 -24975374 - MER104 DNA Tc2 -1721 177 99 1613 174 48 20 chr15 76405147 76405440 -24975081 + AluJo SINE Alu 1 301 -11 453 229 35 28 chr15 76405440 76405508 -24975013 - MER104 DNA Tc2 -1799 99 33 757 237 151 13 chr15 76406785 76407084 -24973437 - MLT1G3 LTR MaLR 0 530 194 1718 203 0 3 chr15 76407207 76407503 -24973018 + AluJo SINE Alu 1 295 -17 1228 183 50 90 chr15 76407509 76407810 -24972711 + AluJb SINE Alu 1 289 -13 1391 193 18 25 chr15 76408013 76408288 -24972233 + AluJb SINE Alu 24 296 -16 795 229 119 14 chr15 76408296 76408506 -24972015 + MIR SINE MIR 26 257 -5 914 182 63 128 chr15 76408509 76408828 -24971693 - AluJb SINE Alu -3 299 2 776 169 0 22 chr15 76408970 76409106 -24971415 - FLAM_C SINE Alu 0 133 1 990 193 0 0 chr15 76409330 76409506 -24971015 + AluJb SINE Alu 123 298 -14 533 184 73 18 chr15 76409638 76409747 -24970774 + L2 LINE L2 3199 3313 0 2224 97 7 29 chr15 76409967 76410276 -24970245 + AluSx SINE Alu 1 302 -10 1206 81 0 87 chr15 76410281 76410466 -24970055 + AluY SINE Alu 1 169 -142 1632 158 47 4 chr15 76410611 76410889 -24969632 + AluJo SINE Alu 1 290 -22 22 0 0 0 chr15 76410889 76410911 -24969610 + AT_rich Low_complexity Low_complexity 1 22 0 560 226 21 59 chr15 76411143 76411329 -24969192 - LTR41 LTR ERVL -594 179 1 2347 56 28 0 chr15 76411403 76411690 -24968831 - AluY SINE Alu -16 295 1 281 171 159 11 chr15 76412295 76412383 -24968138 - MER3 DNA MER1_type -80 129 76 2126 120 3 7 chr15 76412437 76412737 -24967784 - AluSq SINE Alu -14 299 1 371 235 43 17 chr15 76412917 76413032 -24967489 - L1MC5 LINE L1 -50 7911 7794 716 330 17 17 chr15 76415078 76415308 -24965213 - AluJb SINE Alu -72 240 11 787 193 33 0 chr15 76415736 76415886 -24964635 + AluJb SINE Alu 78 232 -80 2343 97 0 7 chr15 76417288 76417598 -24962923 + AluSp SINE Alu 1 308 -5 781 69 0 0 chr15 76417627 76417729 -24962792 + L1PA11 LINE L1 6062 6163 -11 1629 179 19 7 chr15 76417853 76418161 -24962360 - AluJb SINE Alu 0 312 1 537 196 0 0 chr15 76418481 76418578 -24961943 + AluJ/FLAM SINE Alu 1 97 -215 30 0 0 0 chr15 76418578 76418608 -24961913 + AT_rich Low_complexity Low_complexity 1 30 0 2053 111 14 0 chr15 76419826 76420146 -24960375 - AluSx SINE Alu 0 324 1 609 215 40 7 chr15 76420554 76420703 -24959818 + L1MC5 LINE L1 6634 6787 -1174 1280 247 135 45 chr15 76420802 76420912 -24959609 + L1MC5 LINE L1 6998 7097 -864 1415 200 24 3 chr15 76420912 76421207 -24959314 - AluJo SINE Alu -8 304 4 1280 247 135 45 chr15 76421207 76421594 -24958927 + L1MC5 LINE L1 7097 7448 -513 1081 214 48 13 chr15 76421594 76421823 -24958698 + MER8 DNA MER2_type 3 239 0 1280 247 135 45 chr15 76421823 76422163 -24958358 + L1MC5 LINE L1 7448 7911 -50 1659 171 20 0 chr15 76422924 76423222 -24957299 - AluJb SINE Alu -8 304 1 328 288 46 37 chr15 76423752 76424008 -24956513 - HAL1 LINE L1 -1686 821 479 506 206 36 91 chr15 76424114 76424279 -24956242 + MER106B DNA MER1_type 902 1057 -2 273 239 75 0 chr15 76424280 76424347 -24956174 - HAL1 LINE L1 -2019 488 417 1882 156 3 3 chr15 76424629 76424918 -24955603 - AluSx SINE Alu -23 289 1 822 166 7 14 chr15 76424941 76425080 -24955441 - FLAM_C SINE Alu -5 138 1 201 265 29 15 chr15 76425827 76425895 -24954626 + L3 LINE CR1 1169 1237 -340 2261 97 3 0 chr15 76428201 76428500 -24952021 - AluSc SINE Alu -9 300 1 2387 85 0 3 chr15 76429873 76430179 -24950342 + AluY SINE Alu 1 305 -6 2828 101 34 2 chr15 76430298 76430705 -24949816 - MSTA LTR MaLR 0 428 9 1490 134 78 34 chr15 76431118 76431387 -24949134 + AluJo SINE Alu 1 281 -31 366 271 48 16 chr15 76431453 76431641 -24948880 - L1M4 LINE L1 -2798 3348 3155 2430 51 10 3 chr15 76431749 76432043 -24948478 - AluY SINE Alu -15 296 1 2017 123 10 0 chr15 76432106 76432399 -24948122 - AluSx SINE Alu -12 300 5 269 81 0 0 chr15 76433202 76433239 -24947282 + AluSq SINE Alu 141 177 -126 1988 63 30 8 chr15 76433239 76433507 -24947014 - LTR19B LTR ERV1 0 580 307 1105 44 7 7 chr15 76433510 76433647 -24946874 - AluSq/x SINE Alu -175 137 1 206 306 132 16 chr15 76434984 76435105 -24945416 - L2 LINE L2 -741 2573 2439 282 98 0 0 chr15 76435343 76435391 -24945130 + FLAM_A SINE Alu 90 132 -1 1781 155 14 14 chr15 76435407 76435698 -24944823 + AluJo SINE Alu 11 301 -11 346 287 204 19 chr15 76435865 76436022 -24944499 - MIR3 SINE MIR -12 196 11 254 266 43 53 chr15 76436099 76436193 -24944328 + L3 LINE CR1 1481 1573 -4 1882 119 9 56 chr15 76436695 76437125 -24943396 - AluSq SINE Alu 0 424 10 627 149 75 50 chr15 76437383 76437544 -24942977 - L1ME2 LINE L1 0 6164 6000 768 156 7 64 chr15 76437604 76437745 -24942776 - FLAM_C SINE Alu 0 133 1 509 146 21 62 chr15 76438083 76438179 -24942342 + AluJ/FLAM SINE Alu 8 99 -213 580 168 75 50 chr15 76438494 76438655 -24941866 - L1ME2 LINE L1 0 6164 6000 830 136 7 57 chr15 76438716 76438856 -24941665 - FLAM_C SINE Alu 0 133 1 1755 139 30 30 chr15 76439186 76439489 -24941032 + AluJb SINE Alu 1 303 -9 811 126 0 8 chr15 76439497 76439616 -24940905 + FLAM_C SINE Alu 1 118 -25 381 228 22 152 chr15 76440094 76440136 -24940385 + MIR3 SINE MIR 27 73 -135 2400 103 0 0 chr15 76440136 76440448 -24940073 - AluSx SINE Alu 0 312 1 381 228 22 152 chr15 76440448 76440589 -24939932 + MIR3 SINE MIR 73 186 -22 195 183 33 83 chr15 76440911 76440971 -24939550 + MIR SINE MIR 34 90 -172 1992 146 3 7 chr15 76441530 76441838 -24938683 - AluJb SINE Alu -5 307 1 21 36 0 0 chr15 76441865 76441893 -24938628 + AT_rich Low_complexity Low_complexity 1 28 0 369 308 20 55 chr15 76441908 76442054 -24938467 + MIR3 SINE MIR 1 141 -67 180 0 0 0 chr15 76442636 76442656 -24937865 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 183 42 0 0 chr15 76442655 76442679 -24937842 + (TA)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr15 76442901 76442922 -24937599 + AT_rich Low_complexity Low_complexity 1 21 0 1792 149 17 10 chr15 76443046 76443334 -24937187 + AluSx SINE Alu 1 290 -22 2466 76 0 19 chr15 76443460 76443777 -24936744 - AluY SINE Alu 0 311 1 31 0 0 0 chr15 76443800 76443831 -24936690 + AT_rich Low_complexity Low_complexity 1 31 0 2325 87 0 3 chr15 76443831 76444120 -24936401 - AluSx SINE Alu -24 288 1 521 210 57 38 chr15 76444120 76444277 -24936244 - MER112 DNA MER1_type -99 161 2 207 236 24 165 chr15 76444376 76444503 -24936018 + MIR3 SINE MIR 97 205 -3 1745 237 45 27 chr15 76444505 76444994 -24935527 - L2 LINE L2 0 3313 2816 189 208 153 56 chr15 76445021 76445093 -24935428 + MIR SINE MIR 116 194 -68 380 161 0 0 chr15 76445259 76445315 -24935206 + MSTA LTR MaLR 145 200 -228 2341 90 0 32 chr15 76445315 76445627 -24934894 + AluSx SINE Alu 1 302 -10 22 0 0 0 chr15 76446013 76446035 -24934486 + AT_rich Low_complexity Low_complexity 1 22 0 632 234 14 103 chr15 76446160 76446442 -24934079 - L1ME2 LINE L1 -226 5938 5682 1907 127 51 7 chr15 76446452 76446728 -24933793 + MER1B DNA MER1_type 52 339 0 2156 116 7 0 chr15 76446842 76447135 -24933386 + AluSx SINE Alu 1 295 -17 389 260 41 26 chr15 76447251 76447484 -24933037 + L2 LINE L2 2365 2661 -653 1253 258 105 15 chr15 76447484 76448138 -24932383 - L1ME3A LINE L1 -259 5911 5194 1710 162 28 0 chr15 76448169 76448453 -24932068 - AluJo SINE Alu -20 292 1 317 132 0 0 chr15 76448460 76448513 -24932008 - L1MB8 LINE L1 0 6178 6126 1116 162 0 11 chr15 76448514 76448705 -24931816 - AluSg/x SINE Alu -4 308 120 308 167 88 79 chr15 76448707 76448821 -24931700 - L1M4 LINE L1 -3255 2891 2777 744 170 50 38 chr15 76448823 76448982 -24931539 + MER3 DNA MER1_type 2 162 -47 1009 189 18 0 chr15 76448995 76449164 -24931357 - AluJo SINE Alu -140 172 1 2088 125 26 3 chr15 76449179 76449484 -24931037 - AluSx SINE Alu 0 312 1 344 123 105 0 chr15 76449491 76449548 -24930973 + MER3 DNA MER1_type 142 204 -5 524 245 77 50 chr15 76449554 76449852 -24930669 - L1M4 LINE L1 -3363 2783 2478 1940 147 3 14 chr15 76449864 76450156 -24930365 - AluSx SINE Alu -23 289 1 21 57 0 0 chr15 76450323 76450358 -24930163 + AT_rich Low_complexity Low_complexity 1 35 0 240 275 72 0 chr15 76450434 76450503 -24930018 - MER5C DNA MER1_type -2 322 249 498 133 115 18 chr15 76450629 76450742 -24929779 - MER5C DNA MER1_type -200 124 1 2047 113 16 19 chr15 76450834 76451144 -24929377 + AluSx SINE Alu 1 309 -3 28 71 0 0 chr15 76452306 76452362 -24928159 + AT_rich Low_complexity Low_complexity 1 56 0 2626 55 0 7 chr15 76452564 76452872 -24927649 - AluY SINE Alu -5 306 1 284 82 0 20 chr15 76453576 76453625 -24926896 + (TTTTC)n Simple_repeat Simple_repeat 2 49 0 823 154 0 8 chr15 76453652 76453775 -24926746 - AluJb SINE Alu -84 228 107 325 241 9 93 chr15 76453775 76453883 -24926638 + MIR SINE MIR 154 252 -10 1978 149 6 16 chr15 76454023 76454338 -24926183 - AluJo SINE Alu 0 312 1 396 251 166 25 chr15 76454361 76454524 -24925997 - MIR SINE MIR 0 262 77 378 74 0 0 chr15 76454620 76454674 -24925847 + (CA)n Simple_repeat Simple_repeat 2 55 0 3130 166 40 40 chr15 76455035 76455589 -24924932 + MLT2B3 LTR ERVL 1 554 0 258 269 30 0 chr15 76455608 76455675 -24924846 + L2 LINE L2 3199 3267 -5 682 221 55 11 chr15 76455921 76456102 -24924419 - MLT1G1 LTR MaLR -10 580 392 3602 117 60 0 chr15 76456128 76456682 -24923839 - LTR38B LTR ERV1 -23 587 1 1004 234 206 12 chr15 76456683 76457004 -24923517 - MLT1G1 LTR MaLR -178 417 35 901 161 0 30 chr15 76457841 76458009 -24922512 - FRAM SINE Alu -13 163 1 2084 62 72 4 chr15 76458020 76458296 -24922225 - AluSx SINE Alu -17 295 1 195 304 178 20 chr15 76459288 76459535 -24920986 + L2 LINE L2 2563 2848 -466 21 0 0 0 chr15 76459746 76459767 -24920754 + AT_rich Low_complexity Low_complexity 1 21 0 233 279 151 0 chr15 76460051 76460137 -24920384 + L2 LINE L2 3195 3293 -20 413 308 17 8 chr15 76461163 76461283 -24919238 + MIR SINE MIR 3 123 -139 1898 166 0 0 chr15 76461620 76461922 -24918599 - AluJb SINE Alu -10 302 1 2188 85 53 0 chr15 76462369 76462652 -24917869 - AluSg SINE Alu -12 298 1 1215 121 121 0 chr15 76463125 76463331 -24917190 - L1MA5A LINE L1 -3 6294 6064 1246 209 45 21 chr15 76463838 76464125 -24916396 - Charlie4 DNA MER1_type -1665 296 3 1813 165 0 16 chr15 76464215 76464518 -24916003 + AluJo SINE Alu 1 298 -14 2425 82 3 0 chr15 76464814 76465119 -24915402 - AluSx SINE Alu -6 306 1 399 269 81 20 chr15 76465123 76465272 -24915249 - MIR SINE MIR -42 220 63 22 0 0 0 chr15 76465719 76465741 -24914780 + AT_rich Low_complexity Low_complexity 1 22 0 262 315 87 0 chr15 76466618 76466710 -24913811 + MLT1K LTR MaLR 141 240 -348 609 221 161 0 chr15 76466934 76467083 -24913438 + MER5A DNA MER1_type 1 173 -16 424 263 131 0 chr15 76467101 76467238 -24913283 + MER5B DNA MER1_type 16 170 -8 1049 206 56 4 chr15 76467419 76467652 -24912869 + MER82 DNA MER2_type 1 245 -408 1843 147 50 10 chr15 76467904 76468204 -24912317 - AluJo SINE Alu 0 312 1 447 341 26 30 chr15 76468208 76468417 -24912104 + L2 LINE L2 2912 3121 -192 1821 128 120 0 chr15 76468417 76468683 -24911838 - AluSc SINE Alu -1 298 1 447 341 26 30 chr15 76468683 76468743 -24911778 + L2 LINE L2 3121 3180 -133 2290 107 0 0 chr15 76468783 76469082 -24911439 - AluSq SINE Alu -14 299 1 1526 181 24 20 chr15 76469086 76469253 -24911268 - AluJo SINE Alu -19 293 123 180 0 0 0 chr15 76469253 76469273 -24911248 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1526 181 24 20 chr15 76469273 76469397 -24911124 - AluJo SINE Alu -189 123 1 319 262 83 48 chr15 76469397 76469542 -24910979 + L2 LINE L2 3164 3313 0 2092 116 17 0 chr15 76470932 76471224 -24909297 + AluSq SINE Alu 1 297 -16 226 286 339 5 chr15 76471984 76472111 -24908410 - MIR SINE MIR 0 262 73 232 282 127 0 chr15 76472111 76472182 -24908339 + MIR SINE MIR 3 82 -180 1238 279 148 30 chr15 76472230 76472701 -24907820 - L2 LINE L2 -188 3084 2670 2078 108 29 0 chr15 76472701 76472978 -24907543 + AluSp SINE Alu 1 323 0 255 26 53 0 chr15 76472978 76473016 -24907505 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1238 279 148 30 chr15 76473016 76473442 -24907079 - L2 LINE L2 -602 2670 2060 1348 157 6 148 chr15 76473627 76473978 -24906543 + AluJo SINE Alu 2 302 0 242 275 66 33 chr15 76474616 76474707 -24905814 + MIR SINE MIR 58 151 -111 314 135 87 87 chr15 76475383 76475487 -24905034 - MIR3 SINE MIR -16 192 89 24 85 0 0 chr15 76476315 76476374 -24904147 + GC_rich Low_complexity Low_complexity 1 59 0 22 0 0 0 chr15 76476421 76476443 -24904078 + GC_rich Low_complexity Low_complexity 1 22 0 415 246 142 44 chr15 76477496 76477594 -24902927 + MIR SINE MIR 29 116 -146 2682 42 0 3 chr15 76477594 76477906 -24902615 + AluY SINE Alu 1 311 0 415 246 142 44 chr15 76477906 76477990 -24902531 + MIR SINE MIR 116 229 -33 211 297 164 8 chr15 76478205 76478333 -24902188 + L2 LINE L2 3125 3272 0 251 281 112 0 chr15 76478342 76478431 -24902090 + MIR3 SINE MIR 106 204 -4 278 314 10 0 chr15 76478576 76478678 -24901843 + MIR3 SINE MIR 68 170 -38 3000 44 3 5 chr15 76479090 76479457 -24901064 - L1PA8 LINE L1 -2 6170 5805 199 246 41 57 chr15 76479978 76480057 -24900464 + L3b LINE CR1 1331 1409 -174 2585 60 0 0 chr15 76480057 76480357 -24900164 - AluY SINE Alu -11 300 1 199 246 41 57 chr15 76480357 76480399 -24900122 + L3b LINE CR1 1409 1450 -133 2403 86 3 6 chr15 76480433 76480746 -24899775 - AluSx SINE Alu 0 312 1 1940 135 0 62 chr15 76480878 76481203 -24899318 - AluSx SINE Alu -7 305 1 191 27 0 108 chr15 76481343 76481380 -24899141 + (TTTTTA)n Simple_repeat Simple_repeat 3 35 0 885 112 141 82 chr15 76481427 76481633 -24898888 - MER20 DNA MER1_type 0 219 2 476 217 0 0 chr15 76481702 76481794 -24898727 - MER5A DNA MER1_type -85 104 13 409 282 45 74 chr15 76482804 76483106 -24897415 + L1MC4a LINE L1 5569 5862 -1946 2477 78 7 0 chr15 76483106 76483414 -24897107 - AluSp SINE Alu -3 310 1 409 282 45 74 chr15 76483414 76483448 -24897073 + L1MC4a LINE L1 5862 5895 -1913 990 166 78 10 chr15 76483707 76483912 -24896609 + MER20 DNA MER1_type 1 219 0 344 265 87 32 chr15 76484485 76484725 -24895796 + L2 LINE L2 2792 3056 -257 624 275 103 67 chr15 76484865 76485152 -24895369 - HAL1 LINE L1 -1145 1362 1087 2161 114 7 0 chr15 76485152 76485441 -24895080 - AluSx SINE Alu -21 291 1 624 275 103 67 chr15 76485441 76485458 -24895063 - HAL1 LINE L1 -1420 1087 1072 3065 115 18 22 chr15 76485458 76485886 -24894635 + L1MB3 LINE L1 5681 6108 -75 1718 133 52 75 chr15 76485886 76486270 -24894251 + THE1C LTR MaLR 1 375 0 3065 115 18 22 chr15 76486270 76486346 -24894175 + L1MB3 LINE L1 6108 6183 0 624 275 103 67 chr15 76486346 76486610 -24893911 - HAL1 LINE L1 -1435 1072 772 2368 119 0 0 chr15 76487047 76487359 -24893162 - AluSx SINE Alu 0 312 1 181 303 110 26 chr15 76487561 76487716 -24892805 + L2 LINE L2 2680 2847 -467 2164 117 7 0 chr15 76488571 76488869 -24891652 + AluSq SINE Alu 1 300 -13 2141 131 23 0 chr15 76489168 76489473 -24891048 + AluJb SINE Alu 1 312 0 265 254 0 0 chr15 76490192 76490255 -24890266 - MIR SINE MIR -76 186 124 1082 163 60 38 chr15 76490278 76490604 -24889917 - L1M4 LINE L1 -695 5489 5151 2116 127 3 0 chr15 76490608 76490916 -24889605 - AluSx SINE Alu -3 309 1 1678 136 45 55 chr15 76490980 76491288 -24889233 + AluJo SINE Alu 1 305 -7 246 230 370 0 chr15 76491442 76491542 -24888979 + L2 LINE L2 3136 3272 0 2054 123 24 3 chr15 76492117 76492409 -24888112 + AluJb SINE Alu 1 298 -14 2270 105 3 3 chr15 76492687 76492991 -24887530 + AluSx SINE Alu 2 305 -7 508 236 16 0 chr15 76493537 76493660 -24886861 + MER45R DNA AcHobo 1457 1581 0 2193 101 0 0 chr15 76493684 76494003 -24886518 - AluSx SINE Alu 0 327 9 465 279 68 23 chr15 76494094 76494313 -24886208 + L2 LINE L2 1811 2039 -1275 2026 144 3 3 chr15 76494455 76494760 -24885761 + AluSx SINE Alu 1 305 -7 677 149 0 0 chr15 76495090 76495197 -24885324 - AluSg/x SINE Alu -8 302 196 311 226 65 21 chr15 76495458 76495551 -24884970 - L2 LINE L2 -19 3253 3157 214 280 40 0 chr15 76495908 76495983 -24884538 - L3b LINE CR1 -190 1393 1316 1156 240 174 6 chr15 76496085 76496568 -24883953 - L1ME4a LINE L1 0 6121 5558 2079 127 7 3 chr15 76496661 76496968 -24883553 + AluSx SINE Alu 1 308 0 244 215 46 46 chr15 76497575 76497640 -24882881 + L2 LINE L2 3230 3294 -19 2589 53 0 7 chr15 76497869 76498173 -24882348 + AluY SINE Alu 1 302 -9 289 261 99 9 chr15 76499299 76499410 -24881111 + MIR3 SINE MIR 6 126 -82 1950 114 11 0 chr15 76499410 76499672 -24880849 - AluSg SINE Alu -45 265 1 2150 125 0 25 chr15 76500238 76500558 -24879963 - AluSx SINE Alu 0 312 1 646 199 32 65 chr15 76500661 76500847 -24879674 + MER104 DNA MER2_type 1 180 0 24 0 0 0 chr15 76501084 76501108 -24879413 + AT_rich Low_complexity Low_complexity 1 24 0 442 133 78 11 chr15 76501331 76501421 -24879100 - L2 LINE L2 -4 3309 3214 1501 109 4 8 chr15 76501423 76501670 -24878851 - THE1B LTR MaLR -1 363 1 1102 218 57 44 chr15 76501670 76502116 -24878405 - L2 LINE L2 -96 3217 2754 313 205 39 0 chr15 76503034 76503112 -24877409 - MIR SINE MIR -122 140 60 2407 99 0 3 chr15 76505553 76505857 -24874664 + AluSx SINE Alu 1 303 -9 603 89 33 0 chr15 76506175 76506265 -24874256 - L1PB1 LINE L1 -3 6148 6056 2183 118 0 0 chr15 76506507 76506796 -24873725 + AluSg SINE Alu 1 289 -21 2263 81 7 0 chr15 76508224 76508508 -24872013 + AluSp SINE Alu 1 286 -27 2186 101 3 3 chr15 76508860 76509146 -24871375 + AluSq SINE Alu 1 286 -27 207 200 0 0 chr15 76509273 76509318 -24871203 - L3 LINE CR1 -2 1575 1531 22 0 0 0 chr15 76509708 76509730 -24870791 + AT_rich Low_complexity Low_complexity 1 22 0 1143 156 31 58 chr15 76509921 76510146 -24870375 + MER20 DNA MER1_type 1 219 0 1697 168 47 25 chr15 76510159 76510505 -24870016 + MLT1A1 LTR MaLR 1 440 -17 2135 77 27 40 chr15 76511622 76511920 -24868601 + AluSx SINE Alu 6 299 -13 631 226 52 0 chr15 76512559 76512714 -24867807 + MIR SINE MIR 14 176 -86 1783 167 3 26 chr15 76512862 76513034 -24867487 - AluJb SINE Alu -7 305 131 1947 103 81 0 chr15 76513034 76513307 -24867214 - AluSq SINE Alu -17 296 2 2175 112 0 20 chr15 76513308 76513612 -24866909 - AluSx SINE Alu -14 298 1 1783 167 3 26 chr15 76513612 76513749 -24866772 - AluJb SINE Alu -180 132 1 1903 144 13 17 chr15 76514206 76514504 -24866017 + AluSx SINE Alu 1 297 -15 28 0 0 0 chr15 76514545 76514573 -24865948 + AT_rich Low_complexity Low_complexity 1 28 0 1760 141 26 4 chr15 76514573 76514843 -24865678 - AluJo SINE Alu -31 281 6 821 194 5 25 chr15 76514848 76515044 -24865477 + L1ME3 LINE L1 5969 6160 -2 1665 161 52 3 chr15 76515073 76515364 -24865157 + AluJb SINE Alu 1 305 -7 341 176 40 0 chr15 76515525 76515599 -24864922 - MIR SINE MIR -110 152 76 1802 144 49 7 chr15 76517501 76517786 -24862735 - AluSx SINE Alu -15 297 1 762 236 17 11 chr15 76518597 76518775 -24861746 + MER58A DNA MER1_type 46 224 0 373 269 17 34 chr15 76518776 76518895 -24861626 - MIR3 SINE MIR -49 159 43 246 267 0 0 chr15 76519126 76519186 -24861335 + L2 LINE L2 3213 3272 0 2191 120 0 0 chr15 76519204 76519487 -24861034 + AluSx SINE Alu 1 283 -29 357 261 42 0 chr15 76520162 76520281 -24860240 - MIR3 SINE MIR -34 174 51 2398 74 0 10 chr15 76521117 76521414 -24859107 - AluY SINE Alu -17 294 1 351 246 191 0 chr15 76521505 76521615 -24858906 - MER5A DNA MER1_type -58 131 1 267 262 78 0 chr15 76521664 76521767 -24858754 - MIR SINE MIR -112 150 40 2121 127 0 38 chr15 76523684 76524000 -24856521 + AluSq SINE Alu 3 306 -7 1927 102 77 14 chr15 76524257 76524565 -24855956 + AluY SINE Alu 1 311 0 2105 115 38 3 chr15 76524591 76524879 -24855642 + AluSx SINE Alu 3 300 -12 817 68 0 185 chr15 76525060 76525222 -24855299 + AluYa5 SINE Alu 1 132 -179 42705 35 4 3 chr15 76525226 76531371 -24849150 + L1PA4 LINE L1 3 6152 -3 1339 66 0 60 chr15 76531431 76531614 -24848907 + AluY SINE Alu 127 298 -13 236 185 31 62 chr15 76533117 76533182 -24847339 + MIR3 SINE MIR 109 171 -37 239 257 20 79 chr15 76533201 76533302 -24847219 + MER5B DNA MER1_type 36 130 -48 2107 100 11 4 chr15 76533380 76533661 -24846860 - AluSx SINE Alu -8 304 22 190 346 51 0 chr15 76533864 76533942 -24846579 + L2 LINE L2 3232 3313 0 1879 168 0 0 chr15 76534998 76535289 -24845232 + AluSx SINE Alu 1 291 -21 670 266 17 6 chr15 76536167 76536340 -24844181 + MIR SINE MIR 8 182 -80 231 170 0 0 chr15 76537749 76537796 -24842725 + (CAG)n Simple_repeat Simple_repeat 3 49 0 182 62 31 0 chr15 76538045 76538077 -24842444 + (CGGG)n Simple_repeat Simple_repeat 4 36 0 2181 61 25 21 chr15 76538371 76538675 -24841846 + AluY SINE Alu 1 305 0 441 212 23 15 chr15 76538726 76538858 -24841663 + L1MC5 LINE L1 7794 7926 -35 1338 88 65 0 chr15 76538861 76539077 -24841444 - LTR14A LTR ERVK -2 342 113 317 114 0 0 chr15 76539107 76539151 -24841370 - AluSx SINE Alu -258 44 1 394 190 13 0 chr15 76539564 76539643 -24840878 + L1ME1 LINE L1 5218 5297 -849 507 191 150 20 chr15 76539649 76539796 -24840725 + L1MB7 LINE L1 6019 6184 0 2220 218 171 36 chr15 76539809 76540044 -24840477 + L1ME1 LINE L1 5293 5495 -671 2418 104 10 0 chr15 76540044 76540353 -24840168 - AluSx SINE Alu 0 312 1 2220 218 171 36 chr15 76540353 76540871 -24839650 + L1ME1 LINE L1 5495 6148 -18 309 235 24 24 chr15 76540898 76540983 -24839538 - L2 LINE L2 -2 3311 3227 862 249 111 43 chr15 76541139 76541508 -24839013 - L2 LINE L2 0 3313 2920 1265 138 117 0 chr15 76541516 76541704 -24838817 + AluSq SINE Alu 1 210 -103 315 0 0 0 chr15 76543375 76543410 -24837111 + (TG)n Simple_repeat Simple_repeat 1 35 0 431 310 32 43 chr15 76543736 76543923 -24836598 + MIR SINE MIR 77 261 -1 211 319 32 21 chr15 76544070 76544164 -24836357 - MER5A DNA MER1_type 0 189 95 553 253 146 0 chr15 76544348 76544506 -24836015 - MER5A DNA MER1_type -2 187 7 2333 118 0 0 chr15 76544980 76545285 -24835236 + AluSq SINE Alu 1 305 -8 451 296 70 34 chr15 76545466 76545859 -24834662 + LTR16C LTR ERVL 62 487 -4 2381 85 7 0 chr15 76547299 76547593 -24832928 - AluSx SINE Alu -16 296 1 852 265 14 5 chr15 76547596 76547807 -24832714 - MIR SINE MIR -37 225 13 214 331 106 7 chr15 76547951 76548102 -24832419 + MIR3 SINE MIR 18 183 -25 909 258 166 39 chr15 76548567 76549075 -24831446 + L2 LINE L2 2494 2936 -377 1030 115 11 6 chr15 76549075 76549249 -24831272 + (TTTC)n Simple_repeat Simple_repeat 1 175 0 909 258 166 39 chr15 76549249 76549268 -24831253 + L2 LINE L2 2936 2951 -362 1831 168 0 10 chr15 76549268 76549559 -24830962 - AluJb SINE Alu -24 288 1 909 258 166 39 chr15 76549559 76549655 -24830866 + L2 LINE L2 2951 3211 -102 253 274 72 99 chr15 76549726 76550058 -24830463 + L2 LINE L2 2572 2894 -420 696 289 56 42 chr15 76550188 76550472 -24830049 - MLT1J LTR MaLR -2 509 222 337 225 12 0 chr15 76550473 76550553 -24829968 - L1MDa LINE L1 -3954 2586 2506 415 286 63 73 chr15 76552133 76552339 -24828182 + MLT1L LTR MaLR 5 208 -407 242 320 130 43 chr15 76552686 76552863 -24827658 + L2 LINE L2 2329 2489 -825 2198 116 3 0 chr15 76552863 76553155 -24827366 - AluSx SINE Alu -19 293 1 242 320 130 43 chr15 76553155 76553468 -24827053 + L2 LINE L2 2489 2862 -452 808 151 0 43 chr15 76553557 76553696 -24826825 - FLAM_A SINE Alu 0 133 1 248 324 18 27 chr15 76553761 76553872 -24826649 - L2 LINE L2 -21 3292 3183 323 305 26 40 chr15 76553932 76554083 -24826438 - L2 LINE L2 -925 2389 2241 261 328 101 16 chr15 76554083 76554272 -24826249 + L2 LINE L2 3007 3211 -61 513 283 74 8 chr15 76556353 76556597 -24823924 + MIR SINE MIR 1 260 -2 355 338 36 29 chr15 76556599 76556738 -24823783 + L1ME LINE L1 3711 3850 -2296 878 201 13 0 chr15 76556751 76556905 -24823616 - AluJb SINE Alu -20 292 137 283 308 17 26 chr15 76556924 76557041 -24823480 + L1ME LINE L1 4023 4138 -2008 244 203 25 25 chr15 76557046 76557125 -24823396 - MER116 DNA Mariner 0 80 2 970 246 75 45 chr15 76557135 76557359 -24823162 + L1ME LINE L1 4155 4371 -1775 2384 68 0 46 chr15 76557359 76557666 -24822855 + AluY SINE Alu 1 293 -18 970 246 75 45 chr15 76557666 76557742 -24822779 + L1ME LINE L1 4371 4443 -1703 1353 207 31 76 chr15 76557742 76558124 -24822397 + MLT1A1 LTR MaLR 1 365 0 970 246 75 45 chr15 76558124 76558331 -24822190 + L1ME LINE L1 4443 4678 -1468 1038 240 118 7 chr15 76558387 76558422 -24822099 + LTR16C LTR ERVL 163 193 -298 2301 213 19 28 chr15 76558422 76558985 -24821536 + MER74A LTR ERVL 1 558 0 1038 240 118 7 chr15 76558985 76559245 -24821276 + LTR16C LTR ERVL 193 491 0 2292 95 7 10 chr15 76559269 76559565 -24820956 + AluSc SINE Alu 1 295 -14 814 284 29 65 chr15 76559612 76559948 -24820573 + L1ME LINE L1 4738 5085 -1077 1566 189 33 35 chr15 76559948 76560314 -24820207 - MLT1A1 LTR MaLR 0 365 1 814 284 29 65 chr15 76560314 76560350 -24820171 + L1ME LINE L1 5085 5121 -1041 1721 161 34 24 chr15 76560350 76560641 -24819880 + AluJo SINE Alu 1 294 -18 814 284 29 65 chr15 76560641 76561003 -24819518 + L1ME LINE L1 5121 5447 -715 1538 46 0 71 chr15 76561056 76561253 -24819268 + AluY SINE Alu 1 183 -128 218 306 28 0 chr15 76562106 76562178 -24818343 + MIR3 SINE MIR 113 186 -22 1284 214 120 92 chr15 76562368 76562461 -24818060 + MLT2E LTR ERVL 83 172 -456 2995 160 65 35 chr15 76562461 76563062 -24817459 - LTR31 LTR ERV1 0 619 1 1284 214 120 92 chr15 76563062 76563492 -24817029 + MLT2E LTR ERVL 172 621 -7 250 161 0 97 chr15 76564042 76564104 -24816417 + LTR31 LTR ERV1 93 148 -471 234 298 279 6 chr15 76564486 76564647 -24815874 + MIR SINE MIR 50 254 -8 476 271 46 13 chr15 76564698 76564849 -24815672 + MIR SINE MIR 42 197 -65 326 281 104 56 chr15 76565355 76565714 -24814807 + LTR16B LTR ERVL 26 450 0 500 270 20 12 chr15 76566207 76566391 -24814130 + MIR SINE MIR 3 186 -58 932 216 59 5 chr15 76566496 76566718 -24813803 - L1ME3A LINE L1 -5 6165 5932 730 267 68 16 chr15 76566738 76566989 -24813532 - L1ME1 LINE L1 -5 6161 5898 1033 123 6 56 chr15 76566990 76567169 -24813352 - AluJb SINE Alu -18 294 125 362 256 78 14 chr15 76567169 76567276 -24813245 - L1MC4 LINE L1 -1139 6646 6550 1030 178 0 16 chr15 76567278 76567463 -24813058 + AluJb SINE Alu 117 298 -14 911 221 62 50 chr15 76567463 76567802 -24812719 - L1M4 LINE L1 -1459 4687 4345 449 144 383 27 chr15 76567805 76567832 -24812689 + L1MA4A LINE L1 6043 6059 -244 2328 121 3 0 chr15 76567832 76568139 -24812382 + AluSx SINE Alu 1 308 -4 449 144 383 27 chr15 76568139 76568299 -24812222 + L1MA4A LINE L1 6059 6297 -6 275 295 23 31 chr15 76568732 76568795 -24811726 + L2 LINE L2 2313 2375 -939 1988 135 54 0 chr15 76568795 76569091 -24811430 - AluSx SINE Alu 0 312 1 275 295 23 31 chr15 76569091 76569156 -24811365 + L2 LINE L2 2375 2440 -874 2362 64 4 0 chr15 76569325 76569628 -24810893 - AluY SINE Alu 0 304 1 2382 107 10 0 chr15 76569799 76570107 -24810414 - AluSq SINE Alu -2 311 1 183 100 0 0 chr15 76570161 76570191 -24810330 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 251 264 186 16 chr15 76570191 76570320 -24810201 - MIR SINE MIR -87 175 25 657 279 130 52 chr15 76570762 76570922 -24809599 - L2 LINE L2 0 3313 3167 1739 161 23 23 chr15 76570922 76571227 -24809294 + AluJb SINE Alu 1 305 -7 657 279 130 52 chr15 76571227 76571705 -24808816 - L2 LINE L2 -146 3167 2592 2284 116 0 0 chr15 76571705 76571998 -24808523 + AluSx SINE Alu 5 297 -15 1434 142 18 0 chr15 76571998 76572223 -24808298 + MER66A LTR ERV1 250 478 0 243 359 122 6 chr15 76572234 76572415 -24808106 - MIR SINE MIR -14 248 47 252 193 301 12 chr15 76572666 76572749 -24807772 - MER5A DNA MER1_type -6 183 77 352 289 115 44 chr15 76574363 76574708 -24805813 + L1M4 LINE L1 4902 5263 -883 245 243 27 45 chr15 76574678 76574741 -24805780 + L1P LINE L1 5283 5346 -805 * 231 152 0 22 chr15 76574741 76574758 -24805763 + Alu SINE Alu 120 135 -168 2197 98 0 0 chr15 76574758 76575053 -24805468 + AluSx SINE Alu 1 295 -17 245 243 27 45 chr15 76574787 76575083 -24805438 + L1P LINE L1 5346 5391 -760 688 210 0 0 chr15 76575114 76575238 -24805283 + FLAM_C SINE Alu 2 125 -18 2251 155 7 34 chr15 76575340 76575394 -24805127 + Charlie1 DNA MER1_type 1957 2011 -750 2223 75 13 10 chr15 76575394 76575699 -24804822 - AluSq SINE Alu -7 306 1 2251 155 7 34 chr15 76575699 76576057 -24804464 + Charlie1 DNA MER1_type 2011 2358 -403 194 309 59 59 chr15 76576711 76576847 -24803674 + MIR3 SINE MIR 2 137 -71 3817 93 46 44 chr15 76576928 76577541 -24802980 + LTR18B LTR ERVL 1 614 0 363 272 0 35 chr15 76577552 76577721 -24802800 + GA-rich Low_complexity Low_complexity 2 164 0 755 224 11 17 chr15 76578519 76578698 -24801823 - MER5B DNA MER1_type 0 178 1 577 200 62 7 chr15 76578960 76579105 -24801416 + MIR SINE MIR 108 260 -2 1044 254 114 24 chr15 76579201 76579622 -24800899 + MLT1C LTR MaLR 1 459 -8 345 312 71 21 chr15 76580418 76580559 -24799962 - MIR3 SINE MIR -27 181 34 475 194 39 23 chr15 76581526 76581655 -24798866 - L1MA6 LINE L1 -5 6295 6165 * 1061 116 7 0 chr15 76581654 76581809 -24798712 + L1MA6 LINE L1 5786 5941 -359 1909 119 48 0 chr15 76581822 76582115 -24798406 + AluSq SINE Alu 1 307 -6 988 234 25 4 chr15 76582456 76582691 -24797830 - L1MB4 LINE L1 -1 6179 5940 2315 90 0 6 chr15 76582781 76583092 -24797429 - AluY SINE Alu -2 309 1 1714 164 3 3 chr15 76583162 76583455 -24797066 - AluJo SINE Alu -19 293 1 311 300 44 72 chr15 76583483 76583663 -24796858 + MIR3 SINE MIR 20 194 -14 258 159 29 43 chr15 76583944 76584013 -24796508 + (CAGGG)n Simple_repeat Simple_repeat 3 70 0 827 86 200 97 chr15 76584856 76585031 -24795490 + MER46A DNA MER2_type 8 200 -36 216 309 87 16 chr15 76585471 76585597 -24794924 + MIR SINE MIR 108 242 -20 317 254 67 23 chr15 76586687 76586848 -24793673 + MIR SINE MIR 76 246 -16 254 265 80 53 chr15 76586971 76587122 -24793399 - L2 LINE L2 -220 3052 2898 1920 140 7 0 chr15 76587891 76588184 -24792337 - AluSx SINE Alu -17 295 1 1660 101 4 4 chr15 76588285 76588522 -24791999 + AluSq SINE Alu 72 308 -5 368 238 36 12 chr15 76588879 76588963 -24791558 - L2 LINE L2 -2 3270 3185 362 281 99 50 chr15 76589031 76589273 -24791248 + MLT1K LTR MaLR 157 410 -178 351 321 152 11 chr15 76589397 76589581 -24790940 - MIR SINE MIR -19 243 34 328 315 45 45 chr15 76590447 76590647 -24789874 - MIR SINE MIR -49 213 14 229 223 120 131 chr15 76590783 76590958 -24789563 - MER20B DNA MER1_type -581 202 30 257 313 12 12 chr15 76590999 76591079 -24789442 + MIR SINE MIR 15 94 -168 684 262 59 34 chr15 76591319 76591462 -24789059 - MIR SINE MIR 0 262 109 748 240 123 29 chr15 76591462 76591666 -24788855 + MER58A DNA MER1_type 1 223 -1 684 262 59 34 chr15 76591666 76591759 -24788762 - MIR SINE MIR -153 109 20 2310 120 34 3 chr15 76591864 76592247 -24788274 - L1MB4 LINE L1 -1 6179 5785 2097 149 13 37 chr15 76592251 76592597 -24787924 - MER47A DNA MER2_type -1957 366 28 1975 130 10 3 chr15 76592597 76592896 -24787625 + AluSq SINE Alu 1 301 -12 2097 149 13 37 chr15 76592896 76592924 -24787597 - MER47A DNA MER2_type -2295 28 1 309 279 37 87 chr15 76592926 76593087 -24787434 - HAL1 LINE L1 -1 2506 2354 1738 158 10 7 chr15 76593195 76593486 -24787035 - AluJo SINE Alu -18 294 3 517 308 33 0 chr15 76593506 76593681 -24786840 - L1MC4a LINE L1 -1934 5874 5691 2161 108 3 0 chr15 76593681 76593986 -24786535 - AluSx SINE Alu -6 306 1 2045 140 0 3 chr15 76594350 76594658 -24785863 - AluSx SINE Alu -5 307 1 1840 143 0 14 chr15 76594955 76595248 -24785273 + AluJb SINE Alu 11 299 -13 553 292 133 5 chr15 76595889 76596084 -24784437 - MIR SINE MIR -10 252 33 190 246 0 14 chr15 76597315 76597384 -24783137 + GA-rich Low_complexity Low_complexity 2 69 0 814 257 45 37 chr15 76597486 76597731 -24782790 + MLT1A2 LTR MaLR 128 374 0 379 203 25 0 chr15 76597994 76598073 -24782448 - MER5B DNA MER1_type -74 104 24 2433 191 106 44 chr15 76598084 76598195 -24782326 + MER77 LTR ERV1 5 108 -497 2082 114 0 7 chr15 76598195 76598503 -24782018 - AluSx SINE Alu -2 310 5 2433 191 106 44 chr15 76598503 76598956 -24781565 + MER77 LTR ERV1 108 604 -1 355 259 24 0 chr15 76598988 76599073 -24781448 - MER5A DNA MER1_type -53 136 50 327 286 28 113 chr15 76599453 76599585 -24780936 + L2 LINE L2 3073 3182 -90 369 0 0 0 chr15 76599585 76599626 -24780895 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 327 286 28 113 chr15 76599626 76599706 -24780815 + L2 LINE L2 3182 3267 -5 467 268 79 12 chr15 76599958 76600133 -24780388 - MIR3 SINE MIR -60 148 10 1465 103 30 0 chr15 76600743 76600975 -24779546 - L1MA2 LINE L1 -64 6240 6002 23423 144 35 23 chr15 76601104 76603527 -24776994 - L1 LINE L1 -1215 6350 3958 2090 113 0 6 chr15 76603527 76603838 -24776683 - AluSc SINE Alu 0 309 1 23423 144 35 23 chr15 76603838 76604853 -24775668 - L1 LINE L1 -3607 3958 2957 1507 191 0 3 chr15 76604853 76605162 -24775359 + AluSg SINE Alu 1 308 -2 288 0 0 0 chr15 76605162 76605194 -24775327 + (TA)n Simple_repeat Simple_repeat 2 33 0 23423 144 35 23 chr15 76605194 76605809 -24774712 - L1 LINE L1 -4608 2957 2351 2304 54 0 0 chr15 76605809 76606088 -24774433 - AluY SINE Alu -9 302 24 23423 144 35 23 chr15 76606088 76608285 -24772236 - L1 LINE L1 -5214 2351 23 511 167 123 0 chr15 76608286 76608400 -24772121 - MLT1A2 LTR MaLR -246 128 1 1486 233 63 75 chr15 76609179 76609572 -24770949 - MER77 LTR ERV1 -38 567 180 2530 61 0 0 chr15 76609572 76609882 -24770639 - AluY SINE Alu -1 310 1 1486 233 63 75 chr15 76609882 76610008 -24770513 - MER77 LTR ERV1 -425 180 54 371 230 0 7 chr15 76610260 76610395 -24770126 + (TG)n Simple_repeat Simple_repeat 2 135 0 417 214 22 22 chr15 76610423 76610512 -24770009 + FRAM/FAM SINE Alu 1 82 -94 819 262 109 18 chr15 76611193 76611414 -24769107 + MIR SINE MIR 1 241 -21 1579 211 28 18 chr15 76611724 76612097 -24768424 + L1ME3 LINE L1 5767 6145 -17 1296 161 43 144 chr15 76612097 76612513 -24768008 - MLT1A2 LTR MaLR 0 374 1 1579 211 28 18 chr15 76612513 76612531 -24767990 + L1ME3 LINE L1 6145 6161 -1 496 224 72 0 chr15 76613458 76613583 -24766938 - MER94 DNA DNA 0 134 1 180 167 33 0 chr15 76613998 76614028 -24766493 - MIR SINE MIR -63 145 115 2074 114 0 0 chr15 76615157 76615475 -24765046 - AluSx SINE Alu 0 318 1 843 155 61 11 chr15 76615511 76615692 -24764829 - L1MA9 LINE L1 0 6312 6123 1704 136 14 68 chr15 76615692 76615781 -24764740 + L1MA5 LINE L1 5965 6057 -243 1657 177 0 0 chr15 76615781 76616086 -24764435 + AluJo SINE Alu 11 315 0 1704 136 14 68 chr15 76616086 76616344 -24764177 + L1MA5 LINE L1 6057 6298 -2 390 101 127 0 chr15 76616353 76616432 -24764089 - L1MA8 LINE L1 -152 6139 6051 1714 109 42 71 chr15 76616489 76616822 -24763699 + AluSc SINE Alu 1 309 0 2060 109 173 12 chr15 76616945 76617369 -24763152 + LTR14B LTR ERVK 1 608 0 2543 259 75 33 chr15 76617383 76618433 -24762088 - HAL1 LINE L1 -110 2397 1304 343 0 43 0 chr15 76618840 76618887 -24761634 + (TG)n Simple_repeat Simple_repeat 2 50 0 1441 208 40 58 chr15 76618969 76619364 -24761157 + MLT1B LTR MaLR 3 390 0 2036 122 0 0 chr15 76619470 76619766 -24760755 - AluSx SINE Alu -11 301 6 250 276 51 31 chr15 76619771 76619869 -24760652 - L2 LINE L2 -247 3025 2926 25 0 0 0 chr15 76619931 76619956 -24760565 + AT_rich Low_complexity Low_complexity 1 25 0 529 201 7 72 chr15 76620378 76620517 -24760004 + FLAM_C SINE Alu 2 131 -2 352 320 76 12 chr15 76620620 76620792 -24759729 - L1ME4a LINE L1 -4 6117 5935 902 249 70 35 chr15 76621025 76621366 -24759155 + L1MC4a LINE L1 5691 6043 -1765 449 265 118 22 chr15 76622127 76622589 -24757932 - L1ME4a LINE L1 -461 5701 5185 377 70 18 0 chr15 76622607 76622664 -24757857 + (TTTCC)n Simple_repeat Simple_repeat 3 60 0 1441 204 4 7 chr15 76622775 76623050 -24757471 - AluJo SINE Alu -38 274 1 878 179 6 13 chr15 76623794 76623950 -24756571 - MER5A DNA MER1_type -33 156 2 38246 34 28 2 chr15 76623992 76630011 -24750510 + L1PA3 LINE L1 5 6155 0 2222 119 3 6 chr15 76630311 76630623 -24749898 - AluSx SINE Alu 0 312 2 23 33 0 0 chr15 76630662 76630692 -24749829 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr15 76630984 76631019 -24749502 + AT_rich Low_complexity Low_complexity 1 35 0 204 40 0 0 chr15 76632504 76632529 -24747992 + (GTTTG)n Simple_repeat Simple_repeat 2 26 0 381 287 66 11 chr15 76633513 76633694 -24746827 + MIR SINE MIR 2 192 -70 355 250 23 10 chr15 76633916 76634022 -24746499 + MIR SINE MIR 58 160 -64 2400 117 0 0 chr15 76634780 76635088 -24745433 - AluSx SINE Alu -4 308 1 221 282 197 7 chr15 76635745 76635887 -24744634 + MIR3 SINE MIR 31 199 -9 271 287 70 17 chr15 76635893 76636008 -24744513 + L2 LINE L2 3188 3308 -5 446 270 69 35 chr15 76637607 76637781 -24742740 + MIR SINE MIR 26 205 -57 239 363 6 0 chr15 76639269 76639426 -24741095 + GA-rich Low_complexity Low_complexity 3 160 0 187 279 0 0 chr15 76639556 76639599 -24740922 + MIR SINE MIR 108 150 -58 1886 123 3 39 chr15 76640137 76640421 -24740100 + AluSx SINE Alu 2 275 -37 225 0 0 0 chr15 76640425 76640450 -24740071 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 237 304 176 0 chr15 76640516 76640641 -24739880 + MIR SINE MIR 110 256 -6 213 258 0 0 chr15 76642986 76643048 -24737473 + G-rich Low_complexity Low_complexity 1 62 0 540 84 0 0 chr15 76643226 76643309 -24737212 + (TA)n Simple_repeat Simple_repeat 2 84 0 455 261 178 0 chr15 76645790 76645947 -24734574 - MER5A DNA MER1_type -1 188 4 303 140 49 13 chr15 76645952 76646028 -24734493 - L1ME LINE L1 -732 5436 5363 1515 191 19 0 chr15 76646064 76646326 -24734195 + AluJb SINE Alu 37 303 -9 922 111 6 43 chr15 76646335 76646497 -24734024 + MER5A DNA MER1_type 2 157 -32 265 267 52 43 chr15 76646580 76646696 -24733825 + MER91C DNA MER1_type 24 140 0 189 245 19 0 chr15 76646751 76646804 -24733717 - MIR SINE MIR -76 132 79 218 236 36 0 chr15 76649395 76649450 -24731071 + MIR SINE MIR 74 130 -78 1036 163 0 0 chr15 76649891 76650044 -24730477 - FRAM SINE Alu -13 163 11 323 293 150 0 chr15 76650195 76650342 -24730179 - L1M4 LINE L1 -1463 4683 4515 29 0 0 0 chr15 76651184 76651213 -24729308 + AT_rich Low_complexity Low_complexity 1 29 0 631 167 0 9 chr15 76651214 76651322 -24729199 + FLAM_C SINE Alu 2 108 -35 727 116 18 67 chr15 76651422 76651509 -24729012 + L1MB3 LINE L1 6028 6105 -78 1608 154 42 65 chr15 76651509 76651893 -24728628 + THE1C LTR MaLR 1 375 0 727 116 18 67 chr15 76651893 76651969 -24728552 + L1MB3 LINE L1 6105 6183 0 356 358 113 23 chr15 76651976 76652233 -24728288 - HAL1 LINE L1 -1456 1051 772 2411 115 0 0 chr15 76652670 76652982 -24727539 - AluSx SINE Alu 0 312 1 192 364 156 8 chr15 76653089 76653339 -24727182 + L2 LINE L2 2561 2847 -467 185 307 67 0 chr15 76653558 76653633 -24726888 + L2 LINE L2 3005 3084 -188 2249 125 0 0 chr15 76654194 76654498 -24726023 + AluSg SINE Alu 1 304 -6 188 67 33 0 chr15 76654715 76654745 -24725776 + (GGA)n Simple_repeat Simple_repeat 1 31 0 577 238 26 7 chr15 76654867 76655018 -24725503 - MER103 DNA DNA -2 164 11 924 150 8 0 chr15 76655094 76655227 -24725294 + AluJb SINE Alu 1 134 -178 729 271 6 0 chr15 76655250 76655427 -24725094 + MER5A DNA MER1_type 12 189 0 1702 228 68 9 chr15 76655435 76655861 -24724660 + Charlie1a DNA MER1_type 1 451 -1004 729 226 0 0 chr15 76655962 76656108 -24724413 - AluJo SINE Alu -160 152 7 871 226 53 0 chr15 76656240 76656448 -24724073 - MER20 DNA MER1_type 0 219 1 2039 106 61 19 chr15 76656581 76656941 -24723580 - THE1C LTR MaLR 0 375 1 952 217 6 0 chr15 76656976 76657156 -24723365 - AluSc SINE Alu -10 299 119 1933 150 3 29 chr15 76657295 76657601 -24722920 - AluJo SINE Alu -14 298 1 203 256 0 0 chr15 76657630 76657673 -24722848 + MIR SINE MIR 106 148 -114 868 130 143 0 chr15 76657707 76657861 -24722660 + MER20 DNA MER1_type 1 176 -43 308 253 0 42 chr15 76658009 76658104 -24722417 - MIR SINE MIR -78 130 40 300 277 119 38 chr15 76658066 76658225 -24722296 + MIR3 SINE MIR 6 177 -31 * 325 277 21 71 chr15 76658776 76658917 -24721604 + MER5A DNA MER1_type 52 185 -4 354 231 39 90 chr15 76658931 76659121 -24721400 - MER5B DNA MER1_type -11 167 1 190 195 49 0 chr15 76659121 76659161 -24721360 + MIR3 SINE MIR 153 194 -14 653 317 108 17 chr15 76659235 76659595 -24720926 + Charlie8 DNA MER1_type 38 430 -1987 236 235 73 0 chr15 76659600 76659668 -24720853 + Charlie8 DNA MER1_type 1345 1417 -1000 1914 160 4 0 chr15 76659751 76660032 -24720489 + AluSx SINE Alu 1 282 -30 345 24 0 0 chr15 76660039 76660081 -24720440 + (CA)n Simple_repeat Simple_repeat 1 42 0 215 229 129 0 chr15 76661555 76661625 -24718896 + MIR SINE MIR 34 112 -96 180 0 0 0 chr15 76663186 76663206 -24717315 + (TCTG)n Simple_repeat Simple_repeat 3 22 0 223 295 164 8 chr15 76663360 76663482 -24717039 - MIR SINE MIR -45 217 77 2218 115 10 0 chr15 76663503 76663798 -24716723 - AluSx SINE Alu -14 298 1 2854 255 87 72 chr15 76663949 76664748 -24715773 + HAL1 LINE L1 1 787 -1720 2281 84 0 27 chr15 76664748 76665046 -24715475 - AluSx SINE Alu -22 290 1 2854 255 87 72 chr15 76665046 76665211 -24715310 + HAL1 LINE L1 787 948 -1559 1178 157 49 9 chr15 76665211 76665434 -24715087 + MER46A DNA MER2_type 1 232 -4 2854 255 87 72 chr15 76665434 76665555 -24714966 + HAL1 LINE L1 948 1066 -1441 1652 150 59 24 chr15 76665555 76665842 -24714679 + AluJb SINE Alu 1 297 -15 2854 255 87 72 chr15 76665842 76666495 -24714026 + HAL1 LINE L1 1066 1767 -740 21 0 0 0 chr15 76667152 76667173 -24713348 + GC_rich Low_complexity Low_complexity 1 21 0 207 176 0 0 chr15 76667692 76667726 -24712795 - L2 LINE L2 -12 3260 3227 * 240 271 164 0 chr15 76667696 76667818 -24712703 - MIR SINE MIR -10 252 111 217 228 152 43 chr15 76667998 76668090 -24712431 + MIR SINE MIR 161 262 0 2194 113 10 16 chr15 76669099 76669409 -24711112 + AluSx SINE Alu 4 311 -1 1807 171 50 3 chr15 76669477 76669775 -24710746 + AluJo SINE Alu 1 312 0 212 0 36 0 chr15 76669783 76669811 -24710710 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 862 223 24 19 chr15 76669911 76670122 -24710399 - MIR SINE MIR -23 239 28 2221 133 0 0 chr15 76670572 76670880 -24709641 + AluSq SINE Alu 5 312 -1 317 271 84 19 chr15 76671047 76671154 -24709367 - MIR SINE MIR -72 136 23 333 0 0 0 chr15 76671471 76671506 -24709015 + (TG)n Simple_repeat Simple_repeat 1 72 0 333 0 0 0 chr15 76671506 76671543 -24708978 + (TG)n Simple_repeat Simple_repeat 2 38 0 536 196 0 0 chr15 76671665 76671762 -24708759 - AluS SINE Alu -215 98 2 1115 216 61 71 chr15 76671765 76671976 -24708545 - LTR37B LTR ERV1 -5 463 251 2308 110 0 0 chr15 76671976 76672268 -24708253 + AluSx SINE Alu 1 292 -20 1115 216 61 71 chr15 76672268 76672396 -24708125 - LTR37B LTR ERV1 -217 251 128 728 209 51 0 chr15 76672396 76672573 -24707948 + MER5A DNA MER1_type 2 187 -2 1115 216 61 71 chr15 76672573 76672694 -24707827 - LTR37B LTR ERV1 -340 128 7 1935 126 3 21 chr15 76672853 76673138 -24707383 - AluSx SINE Alu -16 296 17 242 264 43 8 chr15 76673623 76673721 -24706800 - MIR3 SINE MIR -38 170 70 1343 163 4 25 chr15 76673772 76674012 -24706509 - AluJb SINE Alu -21 291 57 531 213 98 6 chr15 76676125 76676289 -24704232 - MIR SINE MIR -33 229 51 208 220 51 0 chr15 76680951 76681010 -24699511 + MIR SINE MIR 84 145 -117 2185 118 0 0 chr15 76681184 76681488 -24699033 - AluSx SINE Alu -8 304 1 278 185 19 0 chr15 76683966 76684020 -24696501 + MIR SINE MIR 86 140 -68 236 286 170 0 chr15 76684988 76685100 -24695421 - MIR SINE MIR -56 152 22 219 88 0 0 chr15 76685145 76685179 -24695342 + (TG)n Simple_repeat Simple_repeat 1 34 0 253 284 37 12 chr15 76685476 76685557 -24694964 - MIR SINE MIR -61 147 65 376 273 139 21 chr15 76686272 76686459 -24694062 - MIR SINE MIR -32 230 22 258 286 92 25 chr15 76687982 76688101 -24692420 + MIR SINE MIR 70 196 -66 221 293 121 36 chr15 76688249 76688389 -24692132 + MIR3 SINE MIR 42 193 -15 526 343 19 0 chr15 76691805 76692015 -24688506 + MIR SINE MIR 49 262 0 2121 98 0 3 chr15 76693176 76693517 -24687004 + AluSx SINE Alu 1 340 0 241 279 11 60 chr15 76693913 76694096 -24686425 + G-rich Low_complexity Low_complexity 3 176 0 276 307 60 13 chr15 76694263 76694428 -24686093 - MIR SINE MIR -62 146 26 578 257 66 0 chr15 76695501 76695637 -24684884 - MIR SINE MIR -23 239 95 345 306 108 26 chr15 76695767 76695999 -24684522 + L2 LINE L2 2917 3167 -105 342 305 59 34 chr15 76696585 76696782 -24683739 + MIR SINE MIR 21 225 -37 420 232 39 23 chr15 76698300 76698455 -24682066 + MIR SINE MIR 56 211 -51 294 200 46 0 chr15 76698851 76698916 -24681605 - MIR SINE MIR -55 153 86 380 302 218 20 chr15 76699001 76699203 -24681318 - MIR SINE MIR -19 243 2 235 322 56 0 chr15 76699208 76699298 -24681223 + MIR3 SINE MIR 60 154 -54 272 345 18 9 chr15 76700486 76700599 -24679922 - MIR3 SINE MIR -87 121 8 2277 87 0 10 chr15 76701945 76702245 -24678276 - AluSq SINE Alu -8 305 9 2932 195 94 41 chr15 76702261 76702829 -24677692 + MER45B DNA AcHobo 136 673 -908 2483 129 47 28 chr15 76702829 76703254 -24677267 + Tigger2a DNA MER2_type 1 433 -1 2932 195 94 41 chr15 76703254 76703401 -24677120 + MER45B DNA AcHobo 673 811 -770 2156 118 0 13 chr15 76703401 76703716 -24676805 + AluSx SINE Alu 1 311 -1 2932 195 94 41 chr15 76703716 76703800 -24676721 + MER45B DNA AcHobo 811 978 -62 368 253 33 60 chr15 76704482 76704632 -24675889 + MIR3 SINE MIR 45 190 -18 264 337 0 11 chr15 76704863 76704958 -24675563 - MIR SINE MIR -1 261 168 311 276 47 8 chr15 76705198 76705325 -24675196 - MIR3 SINE MIR -17 191 60 1754 194 24 12 chr15 76706136 76706471 -24674050 + L1MD2 LINE L1 6006 6344 -15 476 353 69 18 chr15 76708225 76708559 -24671962 + L2 LINE L2 2494 2844 -470 1642 122 8 4 chr15 76708564 76708810 -24671711 + AluSg/x SINE Alu 65 311 -1 489 261 62 16 chr15 76709024 76709212 -24671309 - MIR SINE MIR -6 256 25 355 202 75 0 chr15 76709219 76709313 -24671208 - MER103 DNA DNA -15 151 51 1017 167 15 45 chr15 76709313 76709511 -24671010 - AluJb SINE Alu -4 308 117 585 244 0 8 chr15 76709798 76709947 -24670574 + MIR SINE MIR 3 149 -61 1741 138 85 0 chr15 76709948 76710231 -24670290 + AluSq SINE Alu 1 307 -6 1992 164 3 0 chr15 76710673 76710984 -24669537 - AluSx SINE Alu 0 312 1 271 294 11 33 chr15 76711437 76711529 -24668992 + MIR3 SINE MIR 90 179 -29 398 297 21 28 chr15 76711863 76712008 -24668513 + MIR SINE MIR 35 178 -84 * 420 236 13 0 chr15 76711996 76712093 -24668428 - MIR SINE MIR -63 145 63 204 319 29 0 chr15 76712143 76712212 -24668309 + L2 LINE L2 3212 3282 -31 201 283 0 0 chr15 76712681 76712734 -24667787 + (CCG)n Simple_repeat Simple_repeat 1 53 0 326 349 70 12 chr15 76712860 76713032 -24667489 + MIR SINE MIR 25 206 -56 249 347 76 18 chr15 76714116 76714341 -24666180 + L2 LINE L2 2813 3050 -222 356 169 114 0 chr15 76714924 76715005 -24665516 + MIR SINE MIR 61 150 -63 403 318 15 51 chr15 76715631 76715799 -24664722 + MER5A DNA MER1_type 1 163 -26 768 160 96 32 chr15 76715799 76715955 -24664566 - AluJo SINE Alu 0 302 137 403 318 15 51 chr15 76715955 76715981 -24664540 + MER5A DNA MER1_type 163 188 -1 235 361 0 49 chr15 76715981 76716103 -24664418 - MIR3 SINE MIR -36 172 57 23 33 0 0 chr15 76716258 76716288 -24664233 + GC_rich Low_complexity Low_complexity 1 30 0 357 269 148 9 chr15 76716591 76716699 -24663822 + MIR SINE MIR 13 135 -127 1659 87 128 8 chr15 76716743 76717009 -24663512 - AluSg1 SINE Alu -11 298 1 1035 233 58 70 chr15 76717009 76717654 -24662867 + L2 LINE L2 2608 3241 -72 1704 150 0 49 chr15 76717654 76717961 -24662560 - AluJo SINE Alu -20 292 1 900 134 0 8 chr15 76717971 76718105 -24662416 - AluJo SINE Alu -169 133 1 230 312 22 72 chr15 76718184 76718322 -24662199 + MIR SINE MIR 132 262 0 426 83 0 139 chr15 76718628 76718683 -24661838 - Charlie4 DNA MER1_type -60 1901 1867 2172 127 0 0 chr15 76718683 76718990 -24661531 + AluSx SINE Alu 1 307 -5 426 83 0 139 chr15 76718990 76719042 -24661479 - Charlie4 DNA MER1_type -94 1867 1809 1564 179 8 0 chr15 76719048 76719311 -24661210 + AluJb SINE Alu 1 265 -47 228 67 0 0 chr15 76719847 76719877 -24660644 + (GAAA)n Simple_repeat Simple_repeat 4 33 0 21 36 0 0 chr15 76719894 76719922 -24660599 + GC_rich Low_complexity Low_complexity 1 28 0 194 54 0 54 chr15 76719934 76719971 -24660550 + (CCCCG)n Simple_repeat Simple_repeat 1 35 0 185 270 68 40 chr15 76720141 76720215 -24660306 - L3 LINE CR1 -1353 224 149 220 320 207 16 chr15 76720741 76721128 -24659393 + L2 LINE L2 560 1020 -2294 213 326 97 72 chr15 76721134 76721493 -24659028 + L2 LINE L2 1313 1662 -1652 712 215 0 15 chr15 76721493 76721628 -24658893 + FLAM_A SINE Alu 1 133 0 213 326 97 72 chr15 76721628 76721639 -24658882 + L2 LINE L2 1662 1671 -1643 1666 154 3 75 chr15 76721639 76721957 -24658564 + AluJb SINE Alu 4 298 -14 213 326 97 72 chr15 76721957 76722070 -24658451 + L2 LINE L2 1671 1809 -1505 613 311 48 45 chr15 76722256 76722545 -24657976 - L2 LINE L2 -57 3256 2967 841 183 6 12 chr15 76722550 76722714 -24657807 + FRAM SINE Alu 1 162 -14 2049 96 6 26 chr15 76722733 76723045 -24657476 + AluSx SINE Alu 1 306 -6 267 345 118 25 chr15 76723070 76723273 -24657248 + L2 LINE L2 2999 3220 -52 279 228 65 43 chr15 76773903 76773995 -24606526 + LTR16C LTR ERVL 388 481 -10 1127 219 23 0 chr15 76774046 76774261 -24606260 - MER58A DNA MER1_type 0 224 5 618 229 95 1 chr15 76774601 76774862 -24605659 - MER46C DNA MER2_type 0 338 18 24 0 0 0 chr15 76775625 76775649 -24604872 + AT_rich Low_complexity Low_complexity 1 24 0 999 137 6 60 chr15 76775653 76775818 -24604703 - AluSg/x SINE Alu -21 291 135 2091 123 10 0 chr15 76775818 76776120 -24604401 - AluSx SINE Alu -7 305 1 999 137 6 60 chr15 76776120 76776137 -24604384 - AluSg/x SINE Alu -177 135 119 34 42 0 0 chr15 76776733 76776781 -24603740 + AT_rich Low_complexity Low_complexity 1 48 0 610 27 0 0 chr15 76776858 76776931 -24603590 + tRNA-Lys-AAG tRNA tRNA 1 73 -3 2106 83 0 123 chr15 76777098 76777447 -24603074 + AluSg SINE Alu 1 306 -4 264 103 69 17 chr15 76777576 76777634 -24602887 + FAM SINE Alu 119 179 0 311 246 195 10 chr15 76777688 76777867 -24602654 + L1MEc LINE L1 1531 1733 -843 1638 117 93 4 chr15 76777867 76778115 -24602406 - AluY SINE Alu -19 292 23 699 202 58 29 chr15 76778118 76778326 -24602195 - Charlie1 DNA MER1_type -491 2270 2057 339 257 69 0 chr15 76778326 76778427 -24602094 + ERVL LTR ERVL 3938 4045 -1719 789 229 148 9 chr15 76778498 76778708 -24601813 + MLT1G1 LTR MaLR 357 595 0 419 203 13 0 chr15 76778745 76778824 -24601697 + ERVL LTR ERVL 4247 4326 -1159 231 114 0 0 chr15 76778982 76779017 -24601504 + (A)n Simple_repeat Simple_repeat 1 35 0 2144 118 7 7 chr15 76779327 76779632 -24600889 + AluSx SINE Alu 2 306 -6 514 241 241 0 chr15 76780017 76780208 -24600313 + Charlie1 DNA MER1_type 1 237 -2524 1602 158 6 71 chr15 76780262 76780440 -24600081 - AluJb SINE Alu -20 292 141 2367 94 0 0 chr15 76780440 76780738 -24599783 + AluY SINE Alu 1 298 -13 1602 158 6 71 chr15 76780738 76780870 -24599651 - AluJb SINE Alu -171 141 2 442 178 50 20 chr15 76780953 76781054 -24599467 + U6 snRNA snRNA 3 106 -1 2103 131 10 0 chr15 76781276 76781582 -24598939 - AluSg SINE Alu -1 309 1 249 266 82 38 chr15 76781801 76781959 -24598562 + L1ME LINE L1 40 204 -5866 918 154 54 0 chr15 76782183 76782332 -24598189 + FRAM SINE Alu 1 156 -20 1685 184 4 0 chr15 76782444 76782721 -24597800 + AluJb SINE Alu 17 294 -18 1395 81 0 6 chr15 76783099 76783273 -24597248 - AluSp SINE Alu -138 175 3 2537 170 93 62 chr15 76784801 76785676 -24594845 + LTR13 LTR ERVK 53 1007 0 1656 110 4 4 chr15 76786241 76786469 -24594052 + AluSg/x SINE Alu 74 301 -11 1990 125 27 0 chr15 76786497 76786793 -24593728 + AluSp SINE Alu 1 304 -9 462 137 14 0 chr15 76786803 76786876 -24593645 + AluS SINE Alu 2 75 -238 441 165 105 53 chr15 76787225 76787358 -24593163 + MER117 DNA MER1_type 8 147 -50 339 162 0 54 chr15 76787397 76787471 -24593050 - MER4A LTR ERV1 -537 127 58 1715 125 0 8 chr15 76787658 76787906 -24592615 + AluSc SINE Alu 57 302 -7 1934 109 27 17 chr15 76787908 76788201 -24592320 + AluSc SINE Alu 1 296 -13 21 36 0 0 chr15 76788206 76788234 -24592287 + AT_rich Low_complexity Low_complexity 1 28 0 1220 35 0 0 chr15 76788301 76788442 -24592079 + MER107 DNA MER1_type 5 145 -52 233 56 0 28 chr15 76788442 76788478 -24592043 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 2339 101 3 0 chr15 76788685 76788992 -24591529 + AluSp SINE Alu 1 308 -5 183 297 154 11 chr15 76789109 76789200 -24591321 - MIR SINE MIR -8 254 151 2300 95 0 0 chr15 76789259 76789555 -24590966 + AluSg SINE Alu 1 296 -14 183 80 0 0 chr15 76790122 76790147 -24590374 + (GGGTG)n Simple_repeat Simple_repeat 2 26 0 455 101 38 0 chr15 76790247 76790326 -24590195 + AluSp/q SINE Alu 232 313 0 1886 159 11 0 chr15 76790352 76790635 -24589886 + AluSx SINE Alu 1 286 -26 1994 113 21 10 chr15 76791920 76792211 -24588310 + AluSx SINE Alu 1 294 -18 365 161 222 0 chr15 76792775 76792856 -24587665 + MER58 DNA MER1_type 2318 2416 -4 229 219 0 0 chr15 76793208 76793249 -24587272 + Charlie5 DNA MER1_type 39 79 -2533 247 204 37 19 chr15 76793250 76793304 -24587217 + Tigger5 DNA MER2_type 1 55 -2268 * 297 183 42 14 chr15 76793274 76793345 -24587176 + Tigger5 DNA MER2_type 2250 2322 -1 398 296 74 5 chr15 76793460 76793663 -24586858 - MIR SINE MIR -9 253 37 246 274 0 0 chr15 76793687 76793749 -24586772 - L1MC5 LINE L1 -389 7572 7511 246 263 95 21 chr15 76793894 76793989 -24586532 - L1MC5 LINE L1 -600 7361 7260 21 0 0 0 chr15 76794185 76794206 -24586315 + AT_rich Low_complexity Low_complexity 1 21 0 548 149 0 11 chr15 76794864 76794958 -24585563 - FRAM SINE Alu -55 121 29 1413 165 86 29 chr15 76795118 76795397 -24585124 - AluJo SINE Alu -12 300 6 2152 99 21 0 chr15 76795509 76795793 -24584728 + AluSq SINE Alu 2 291 -22 1945 64 0 0 chr15 76796506 76796739 -24583782 - AluY SINE Alu -78 233 1 321 292 125 7 chr15 76797648 76797792 -24582729 + MIR SINE MIR 76 236 -26 2189 109 3 7 chr15 76798707 76799010 -24581511 - AluSp SINE Alu -11 302 1 990 98 0 0 chr15 76799011 76799134 -24581387 - AluSg1 SINE Alu -185 124 2 2405 88 0 0 chr15 76799146 76799443 -24581078 - AluSg SINE Alu -13 297 1 2122 130 14 0 chr15 76800140 76800433 -24580088 - AluSx SINE Alu -15 297 1 480 141 107 66 chr15 76800441 76800562 -24579959 - FLAM_A SINE Alu -5 137 12 899 153 45 25 chr15 76801037 76801194 -24579327 - AluJo SINE Alu -21 291 132 2287 93 10 10 chr15 76801719 76802030 -24578491 + AluSq SINE Alu 1 311 -2 705 163 15 30 chr15 76803432 76803567 -24576954 - AluJo SINE Alu -169 133 1 2084 97 0 0 chr15 76803706 76803974 -24576547 + AluSg SINE Alu 6 273 -37 697 198 0 0 chr15 76804015 76804131 -24576390 - FLAM_A SINE Alu -17 116 1 2397 130 119 15 chr15 76804948 76805418 -24575103 + L1MA7 LINE L1 5768 6286 -5 431 239 176 19 chr15 76806026 76806185 -24574336 + MIR SINE MIR 23 206 -56 213 245 75 0 chr15 76806240 76806293 -24574228 - MIR SINE MIR -164 98 42 1732 264 96 30 chr15 76806590 76806634 -24573887 - MER45C DNA AcHobo -661 920 880 1918 139 60 0 chr15 76806634 76806915 -24573606 + AluSg SINE Alu 1 298 -12 1732 264 96 30 chr15 76806915 76807658 -24572863 - MER45C DNA AcHobo -701 880 1 391 236 0 45 chr15 76807670 76807759 -24572762 - MER81 DNA DNA -26 88 4 2292 86 7 0 chr15 76807872 76808163 -24572358 - AluSp SINE Alu -5 308 16 1504 268 88 43 chr15 76808264 76808898 -24571623 + ERVL LTR ERVL 4711 5373 -391 556 160 160 103 chr15 76809169 76809382 -24571139 + LTR50 LTR ERVL 8 232 -563 26 21 0 42 chr15 76809682 76809714 -24570807 + AT_rich Low_complexity Low_complexity 1 32 -14 1955 105 11 11 chr15 76809714 76809981 -24570540 - AluSx SINE Alu -21 291 25 26 21 0 42 chr15 76809981 76809996 -24570525 + AT_rich Low_complexity Low_complexity 32 46 0 555 237 96 73 chr15 76810052 76810463 -24570058 - MLT1H1 LTR MaLR -2 553 152 1297 86 0 0 chr15 76810480 76810642 -24569879 - AluY SINE Alu -9 302 141 778 276 36 0 chr15 76812369 76812594 -24567927 + MIR SINE MIR 16 248 -14 1348 115 6 0 chr15 76812748 76812930 -24567591 - AluSg/x SINE Alu -19 291 109 2338 113 3 0 chr15 76813235 76813544 -24566977 - AluSg SINE Alu 0 310 1 219 36 0 0 chr15 76813802 76813830 -24566691 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2093 107 4 4 chr15 76813832 76814112 -24566409 - AluSc SINE Alu -29 280 1 2332 116 2 114 chr15 76814215 76814671 -24565850 + MLT1C LTR MaLR 7 411 -56 34 24 0 0 chr15 76814716 76814757 -24565764 + AT_rich Low_complexity Low_complexity 1 41 0 342 252 86 14 chr15 76815716 76815855 -24564666 + L1MC5 LINE L1 7507 7655 -306 587 249 27 41 chr15 76815875 76816096 -24564425 + L1MC5 LINE L1 7709 7926 -35 534 259 80 58 chr15 76816127 76816367 -24564154 + L1MC5 LINE L1 7238 7415 -393 1866 181 56 62 chr15 76816482 76816572 -24563949 - Charlie4a DNA MER1_type -1483 478 389 2370 85 3 3 chr15 76816572 76816867 -24563654 - AluSp SINE Alu -16 297 3 1866 181 56 62 chr15 76816867 76816974 -24563547 - Charlie4a DNA MER1_type -1572 389 283 2303 113 0 0 chr15 76816974 76817276 -24563245 - AluSg SINE Alu -8 302 1 1866 181 56 62 chr15 76817276 76817441 -24563080 - Charlie4a DNA MER1_type -1678 283 116 2205 102 0 20 chr15 76817441 76817744 -24562777 - AluY SINE Alu -14 297 1 1866 181 56 62 chr15 76817744 76817860 -24562661 - Charlie4a DNA MER1_type -1845 116 1 1666 106 44 0 chr15 76817887 76818113 -24562408 + AluSx SINE Alu 1 236 -76 1881 94 0 0 chr15 76818210 76818444 -24562077 + AluSp SINE Alu 1 234 -79 247 257 14 0 chr15 76818570 76818640 -24561881 - MER96B DNA MER1_type? -346 71 1 998 222 77 0 chr15 76818705 76818926 -24561595 - LTR39 LTR ERV1 0 783 546 956 170 0 0 chr15 76818929 76819082 -24561439 + FRAM SINE Alu 1 153 -23 342 127 0 0 chr15 76819082 76819153 -24561368 + (CCA)n Simple_repeat Simple_repeat 1 71 0 2533 71 3 0 chr15 76819156 76819466 -24561055 + AluY SINE Alu 1 311 0 3001 135 85 2 chr15 76819486 76819991 -24560530 - LTR39 LTR ERV1 -225 558 12 2341 85 3 3 chr15 76820138 76820453 -24560068 - AluSp SINE Alu 0 315 1 434 294 22 15 chr15 76820473 76820609 -24559912 + L2 LINE L2 3172 3308 -5 840 234 20 30 chr15 76820626 76820823 -24559698 - MIR SINE MIR -37 225 31 1069 163 79 0 chr15 76820823 76821026 -24559495 - MER20 DNA MER1_type 0 219 1 2053 89 57 0 chr15 76821034 76821314 -24559207 - AluSx SINE Alu -16 296 1 2326 152 82 76 chr15 76821506 76821696 -24558825 + LTR39 LTR ERV1 269 456 -327 2001 118 0 14 chr15 76821696 76821875 -24558646 - AluSx SINE Alu 0 312 137 2323 100 0 7 chr15 76821875 76822174 -24558347 - AluSc SINE Alu -12 297 1 2001 118 0 14 chr15 76822174 76822310 -24558211 - AluSx SINE Alu -175 137 1 2326 152 82 76 chr15 76822310 76822630 -24557891 + LTR39 LTR ERV1 456 783 0 452 242 77 45 chr15 76822792 76822988 -24557533 - MIR SINE MIR -62 146 16 733 225 94 75 chr15 76823225 76823599 -24556922 + MLT1F LTR MaLR 162 542 0 205 341 56 0 chr15 76823599 76823725 -24556796 + L2 LINE L2 3181 3313 0 1745 157 25 0 chr15 76825440 76825739 -24554782 + AluJo SINE Alu 1 306 0 2198 127 0 0 chr15 76826142 76826441 -24554080 - AluSx SINE Alu -13 299 1 407 105 0 0 chr15 76826839 76826896 -24553625 - AluSq/x SINE Alu -189 124 68 2358 108 0 0 chr15 76827008 76827314 -24553207 - AluSq SINE Alu -7 306 1 885 73 0 0 chr15 76827748 76827857 -24552664 - AluSq/x SINE Alu -203 109 1 22 0 0 0 chr15 76827873 76827895 -24552626 + AT_rich Low_complexity Low_complexity 1 22 0 2287 120 0 0 chr15 76828407 76828707 -24551814 + AluSx SINE Alu 1 300 -12 247 174 0 0 chr15 76828729 76828775 -24551746 - MIR SINE MIR -170 92 47 1928 150 0 22 chr15 76829064 76829378 -24551143 - AluJo SINE Alu -5 307 1 209 150 50 17 chr15 76829386 76829446 -24551075 + T-rich Low_complexity Low_complexity 3 64 0 1212 166 25 4 chr15 76829606 76829847 -24550674 + MER33 DNA MER1_type 9 254 -70 608 162 68 6 chr15 76829860 76830100 -24550421 + AluJb SINE Alu 2 301 -11 1974 165 0 9 chr15 76830102 76830417 -24550104 + AluJb SINE Alu 1 312 0 317 206 0 15 chr15 76830427 76830495 -24550026 + MER33 DNA MER1_type 258 324 0 23 0 0 0 chr15 76830572 76830595 -24549926 + AT_rich Low_complexity Low_complexity 1 23 0 624 219 64 105 chr15 76830607 76830930 -24549591 - L1MC4 LINE L1 -130 7912 7604 529 189 74 0 chr15 76830930 76831052 -24549469 - FLAM_C SINE Alu -2 131 1 624 219 64 105 chr15 76831052 76831089 -24549432 - L1MC4 LINE L1 -438 7604 7567 261 0 0 0 chr15 76831089 76831118 -24549403 + (TG)n Simple_repeat Simple_repeat 2 30 0 1691 174 0 40 chr15 76831118 76831422 -24549099 - AluJo SINE Alu -20 292 1 418 266 0 0 chr15 76831495 76831608 -24548913 - MER63A DNA MER1_type 0 210 98 1369 211 50 6 chr15 76831666 76831989 -24548532 + MER31B LTR ERV1 130 466 0 249 214 57 0 chr15 76832017 76832087 -24548434 - MER63A DNA MER1_type 0 74 1 332 243 97 0 chr15 76832090 76832193 -24548328 - L1MC4 LINE L1 -489 7553 7441 2215 84 0 0 chr15 76832242 76832534 -24547987 + AluSg SINE Alu 17 308 0 682 248 69 0 chr15 76832560 76832778 -24547743 + L2 LINE L2 3081 3313 0 1172 136 0 0 chr15 76833076 76833231 -24547290 + AluSx SINE Alu 1 155 -157 1088 115 0 0 chr15 76833341 76833489 -24547032 + AluSc SINE Alu 162 309 0 623 201 152 15 chr15 76834047 76834251 -24546270 + L1MC4a LINE L1 5683 5914 -1894 2398 99 3 0 chr15 76834841 76835144 -24545377 - AluSx SINE Alu -8 304 1 594 286 31 13 chr15 76835675 76835902 -24544619 + MIR SINE MIR 28 258 -4 271 250 99 0 chr15 76837186 76837290 -24543231 + MIR SINE MIR 44 161 -68 1104 216 81 66 chr15 76837290 76837757 -24542764 - MER113 DNA MER1_type? -44 477 4 615 236 25 42 chr15 76837766 76837855 -24542666 - MER112 DNA MER1_type -7 253 164 659 132 14 97 chr15 76837855 76837999 -24542522 + FLAM_C SINE Alu 1 132 -1 615 236 25 42 chr15 76837999 76838150 -24542371 - MER112 DNA MER1_type -96 164 17 2007 156 3 29 chr15 76838256 76838570 -24541951 - AluJb SINE Alu -6 306 1 1446 95 50 9 chr15 76839040 76839261 -24541260 + MER30 DNA MER1_type 1 230 0 234 0 0 0 chr15 76839310 76839336 -24541185 + (CA)n Simple_repeat Simple_repeat 2 27 0 435 290 121 19 chr15 76840471 76840678 -24539843 + MIR SINE MIR 22 249 -13 985 118 0 7 chr15 76841013 76841149 -24539372 + AluJo SINE Alu 1 135 -177 320 253 11 81 chr15 76841158 76841300 -24539221 - MIR SINE MIR -64 144 32 2390 68 16 7 chr15 76841510 76841818 -24538703 - AluY SINE Alu 0 311 1 1739 155 12 43 chr15 76841822 76842144 -24538377 - AluJb SINE Alu 0 312 1 1295 181 104 3 chr15 76842144 76842432 -24538089 - L1MB7 LINE L1 -257 5927 5611 1236 107 79 0 chr15 76842435 76842613 -24537908 - AluSq SINE Alu -12 301 110 632 186 0 0 chr15 76842640 76842764 -24537757 - L1MB7 LINE L1 -2354 3792 3669 195 286 14 57 chr15 76843122 76843192 -24537329 + L2 LINE L2 3205 3271 -1 261 57 0 0 chr15 76843217 76843252 -24537269 + (CCCCCT)n Simple_repeat Simple_repeat 6 40 0 2169 78 35 11 chr15 76843252 76843535 -24536986 - AluSx SINE Alu -22 290 1 440 266 70 0 chr15 76843790 76843948 -24536573 + L1MC3 LINE L1 7616 7784 -1 2369 93 0 0 chr15 76844016 76844306 -24536215 - AluSg SINE Alu -20 290 1 517 291 199 43 chr15 76844390 76844626 -24535895 - L1M4 LINE L1 -1355 4791 4593 2129 125 3 3 chr15 76844626 76844922 -24535599 + AluSg SINE Alu 1 296 -14 517 291 199 43 chr15 76844922 76845193 -24535328 - L1M4 LINE L1 -1553 4593 4205 2180 101 54 7 chr15 76845381 76845677 -24534844 + AluSx SINE Alu 1 310 -2 24 0 0 0 chr15 76845744 76845768 -24534753 + AT_rich Low_complexity Low_complexity 1 24 0 1987 103 0 27 chr15 76845769 76846032 -24534489 - AluSx SINE Alu -55 257 2 533 290 60 25 chr15 76848280 76848316 -24532205 - MER113 DNA MER1_type? -78 443 410 2306 105 3 0 chr15 76848316 76848612 -24531909 - AluSx SINE Alu -15 297 1 533 290 60 25 chr15 76848612 76848858 -24531663 - MER113 DNA MER1_type? -111 410 151 2066 129 3 23 chr15 76849716 76850019 -24530502 - AluSx SINE Alu -15 297 1 226 325 127 13 chr15 76850076 76850233 -24530288 + MIR SINE MIR 54 228 -34 404 291 9 0 chr15 76851015 76851125 -24529396 + MER5B DNA MER1_type 28 138 -40 574 308 66 4 chr15 76851697 76851924 -24528597 + MIR SINE MIR 22 262 0 321 301 20 26 chr15 76852231 76852384 -24528137 + MLT1I LTR MaLR 258 409 0 2465 78 3 3 chr15 76853309 76853616 -24526905 + AluSg1 SINE Alu 1 307 -2 209 182 45 0 chr15 76854912 76854956 -24525565 - MIR SINE MIR -139 123 78 253 200 200 0 chr15 76855144 76855214 -24525307 + L2 LINE L2 3187 3270 -2 2372 85 0 3 chr15 76855265 76855601 -24524920 + AluSx SINE Alu 1 335 0 184 301 14 14 chr15 76856266 76856339 -24524182 + MIR SINE MIR 46 118 -144 225 247 151 43 chr15 76856648 76856741 -24523780 + L2 LINE L2 3149 3251 -21 491 317 27 0 chr15 76858176 76858362 -24522159 + MIR SINE MIR 2 192 -70 285 235 128 0 chr15 76858702 76858804 -24521717 + MIR SINE MIR 31 145 -63 847 169 21 21 chr15 76860301 76860490 -24520031 + MER53 DNA DNA 1 189 0 529 265 14 14 chr15 76860956 76861103 -24519418 - MER5B DNA MER1_type -30 148 2 1886 87 8 0 chr15 76861190 76861432 -24519089 - AluSg/x SINE Alu 0 312 69 2506 74 3 0 chr15 76861650 76861947 -24518574 - AluSp SINE Alu -15 298 1 3719 150 31 9 chr15 76862862 76863105 -24517416 - L1MA4 LINE L1 -5 6295 6059 2374 102 0 0 chr15 76863105 76863400 -24517121 + AluSx SINE Alu 1 295 -17 3719 150 31 9 chr15 76863400 76863895 -24516626 - L1MA4 LINE L1 -241 6059 5541 729 218 92 19 chr15 76864398 76864604 -24515917 + L1ME3A LINE L1 5947 6167 -3 2333 86 20 0 chr15 76864624 76864925 -24515596 + AluSx SINE Alu 1 307 -5 629 291 23 0 chr15 76864936 76865108 -24515413 - MER58A DNA MER1_type 0 224 49 740 169 0 0 chr15 76865330 76865454 -24515067 + FLAM_C SINE Alu 12 135 -8 811 130 0 9 chr15 76865456 76865571 -24514950 + AluJb SINE Alu 185 298 -14 1996 197 66 99 chr15 76865577 76865694 -24514827 - Charlie2 DNA MER1_type -161 2701 2582 2332 114 0 0 chr15 76865694 76866001 -24514520 + AluSq SINE Alu 1 307 -6 1996 197 66 99 chr15 76866001 76866162 -24514359 - Charlie2 DNA MER1_type -280 2582 2417 2494 88 3 0 chr15 76866162 76866468 -24514053 + AluSg SINE Alu 1 307 -3 1996 197 66 99 chr15 76866468 76866528 -24513993 - Charlie2 DNA MER1_type -445 2417 2357 2565 50 0 13 chr15 76866528 76866830 -24513691 + AluY SINE Alu 1 298 -13 1996 197 66 99 chr15 76866830 76867221 -24513300 - Charlie2 DNA MER1_type -505 2357 1999 2268 120 10 0 chr15 76867221 76867530 -24512991 - AluSx SINE Alu 0 312 1 1996 197 66 99 chr15 76867530 76867643 -24512878 - Charlie2 DNA MER1_type -863 1999 1884 417 248 47 8 chr15 76867748 76867877 -24512644 - Charlie2 DNA MER1_type -2647 135 2 1710 125 102 4 chr15 76868269 76868547 -24511974 - AluSx SINE Alu 0 303 1 1143 221 82 4 chr15 76868547 76868828 -24511693 + MER58B DNA MER1_type 39 341 0 202 111 0 44 chr15 76870116 76870161 -24510360 + (CGGGG)n Simple_repeat Simple_repeat 2 44 0 221 311 0 44 chr15 76870351 76870534 -24509987 + C-rich Low_complexity Low_complexity 3 177 0 298 287 0 54 chr15 76870594 76870761 -24509760 + C-rich Low_complexity Low_complexity 3 160 0 214 309 0 54 chr15 76870779 76870928 -24509593 + C-rich Low_complexity Low_complexity 2 142 0 270 313 6 45 chr15 76870969 76871148 -24509373 + C-rich Low_complexity Low_complexity 1 172 0 298 161 43 75 chr15 76871659 76871752 -24508769 - MIR SINE MIR -81 181 92 1567 157 80 28 chr15 76871836 76872122 -24508399 - AluJb SINE Alu -7 305 5 215 324 44 0 chr15 76872259 76872327 -24508194 - MER5A DNA MER1_type -56 133 63 364 266 29 99 chr15 76872778 76873011 -24507510 + MIR3 SINE MIR 12 229 -33 1257 200 146 85 chr15 76873248 76873793 -24506728 + MLT1E2 LTR MaLR 71 626 0 397 252 100 52 chr15 76873916 76873972 -24506549 - MIR SINE MIR -31 231 179 2094 126 3 3 chr15 76873972 76874274 -24506247 - AluSx SINE Alu -1 311 10 397 252 100 52 chr15 76874274 76874427 -24506094 - MIR SINE MIR -83 179 12 292 283 41 34 chr15 76874784 76874939 -24505582 - MIR SINE MIR -11 251 96 232 235 0 0 chr15 76875035 76875086 -24505435 + (TGGA)n Simple_repeat Simple_repeat 1 51 0 204 143 0 0 chr15 76875123 76875165 -24505356 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 2376 88 0 0 chr15 76875579 76875874 -24504647 - AluSq SINE Alu -10 303 9 757 181 16 22 chr15 76875874 76876056 -24504465 - MER96B DNA MER1_type? -236 181 1 276 207 0 0 chr15 76877562 76877620 -24502901 - L1MB5 LINE L1 -6 6168 6111 2081 192 13 10 chr15 76877702 76878093 -24502428 - L1MB5 LINE L1 -9 6165 5774 192 97 0 0 chr15 76878093 76878124 -24502397 + (TG)n Simple_repeat Simple_repeat 2 32 0 1324 90 6 6 chr15 76878124 76878301 -24502220 - AluSg/x SINE Alu -27 283 111 1705 140 0 54 chr15 76878306 76878620 -24501901 - AluJo SINE Alu -15 297 1 2539 167 11 7 chr15 76878620 76879081 -24501440 - L1MB5 LINE L1 -393 5785 5323 1008 141 6 6 chr15 76879081 76879244 -24501277 - AluSq SINE Alu -19 294 132 749 202 42 0 chr15 76879246 76879439 -24501082 - L1MB5 LINE L1 -825 5321 5121 204 294 100 35 chr15 76879605 76879775 -24500746 - L2 LINE L2 -175 3097 2917 313 271 71 13 chr15 76879840 76879995 -24500526 - L2 LINE L2 -903 2411 2248 796 211 18 44 chr15 76880588 76880815 -24499706 - MER96B DNA MER1_type? -196 221 1 1040 208 77 0 chr15 76880880 76881101 -24499420 - LTR39 LTR ERV1 0 783 546 879 171 7 0 chr15 76881104 76881256 -24499265 + FRAM SINE Alu 1 153 -23 351 151 0 0 chr15 76881256 76881330 -24499191 + (CCA)n Simple_repeat Simple_repeat 1 77 -9 2296 84 7 0 chr15 76881330 76881639 -24498882 + AluY SINE Alu 1 311 0 351 151 0 0 chr15 76881639 76881650 -24498871 + (CCA)n Simple_repeat Simple_repeat 76 86 0 672 184 17 39 chr15 76881659 76881838 -24498683 - LTR39 LTR ERV1 -225 558 384 2134 129 7 0 chr15 76883413 76883722 -24496799 - AluSx SINE Alu -1 311 1 1266 176 19 0 chr15 76885067 76885277 -24495244 + MER20 DNA MER1_type 4 217 -2 328 194 52 73 chr15 76885362 76885542 -24494979 - HsTC2 DNA Tc2 -3 1895 1 254 296 82 15 chr15 76886517 76886652 -24493869 + MIR3 SINE MIR 43 186 -22 476 276 33 44 chr15 76887209 76887390 -24493131 + MIR3 SINE MIR 21 199 -9 773 326 73 63 chr15 76890395 76890831 -24489690 + L1M4 LINE L1 4121 4565 -1581 2214 107 0 28 chr15 76890831 76891149 -24489372 + AluSx SINE Alu 1 309 -3 773 326 73 63 chr15 76891149 76891252 -24489269 + L1M4 LINE L1 4565 4665 -1481 2152 118 0 0 chr15 76891547 76891844 -24488677 - AluSx SINE Alu -15 297 1 26 30 0 0 chr15 76891854 76891887 -24488634 + AT_rich Low_complexity Low_complexity 1 33 0 338 280 11 91 chr15 76891899 76892074 -24488447 + L1MDa LINE L1 1914 2074 -4466 625 306 196 23 chr15 76892093 76892609 -24487912 + L1M4 LINE L1 3474 4078 -2068 1984 121 4 0 chr15 76892612 76892926 -24487595 + AluSx SINE Alu 1 315 0 348 325 251 0 chr15 76893434 76893625 -24486896 + MIR SINE MIR 14 252 -10 217 331 39 0 chr15 76894053 76894183 -24486338 + L3 LINE CR1 1224 1358 -219 292 335 112 19 chr15 76894241 76894402 -24486119 + MIR SINE MIR 67 242 -20 387 271 89 40 chr15 76895251 76895473 -24485048 - MIR SINE MIR -19 243 8 509 268 23 6 chr15 76895747 76895906 -24484615 + MIR SINE MIR 33 192 -63 279 260 48 10 chr15 76897416 76897520 -24483001 - MIR SINE MIR -75 133 26 704 87 58 17 chr15 76898397 76898748 -24481773 + (TG)n Simple_repeat Simple_repeat 1 365 0 505 229 0 70 chr15 76900222 76900264 -24480257 + MLT1C LTR MaLR 321 364 -103 1992 139 0 7 chr15 76900264 76900566 -24479955 - AluSx SINE Alu -12 300 1 505 229 0 70 chr15 76900566 76900613 -24479908 + MLT1C LTR MaLR 364 413 -54 2173 112 3 6 chr15 76900613 76900926 -24479595 - AluSx SINE Alu 0 312 1 505 229 0 70 chr15 76900926 76900992 -24479529 + MLT1C LTR MaLR 413 466 -1 222 297 108 38 chr15 76901304 76901489 -24479032 + L2 LINE L2 3049 3246 -26 231 365 63 0 chr15 76901824 76901950 -24478571 - MIR SINE MIR -109 153 20 264 100 0 0 chr15 76902059 76902099 -24478422 + (TG)n Simple_repeat Simple_repeat 1 40 0 190 245 255 0 chr15 76902397 76902491 -24478030 - MIR SINE MIR -81 181 64 863 206 23 68 chr15 76902615 76902786 -24477735 + MER3 DNA MER1_type 1 161 -48 2240 101 0 10 chr15 76902786 76903092 -24477429 + AluSq SINE Alu 1 303 -10 863 206 23 68 chr15 76903092 76903139 -24477382 + MER3 DNA MER1_type 161 209 0 593 284 38 7 chr15 76905681 76905880 -24474641 + MIR SINE MIR 3 212 -50 44 46 0 0 chr15 76907135 76907200 -24473321 + AT_rich Low_complexity Low_complexity 1 65 0 360 255 20 10 chr15 76907226 76907328 -24473193 + MER103 DNA DNA 14 116 -50 528 203 223 0 chr15 76907344 76907492 -24473029 - MER5A DNA MER1_type 0 189 9 203 247 49 37 chr15 76907713 76907794 -24472727 + MIR SINE MIR 83 143 -65 266 194 15 0 chr15 76907843 76907910 -24472611 + (CA)n Simple_repeat Simple_repeat 1 68 0 263 268 189 24 chr15 76908445 76908609 -24471912 + L2 LINE L2 2864 3054 -218 202 274 0 20 chr15 76909898 76909949 -24470572 - MIR SINE MIR -67 141 92 329 240 89 44 chr15 76910167 76910324 -24470197 - MIR SINE MIR -65 197 42 395 224 9 0 chr15 76911046 76911153 -24469368 + CT-rich Low_complexity Low_complexity 3 110 0 271 186 93 41 chr15 76911940 76912037 -24468484 + L1MEd LINE L1 34 135 -5984 614 265 54 7 chr15 76912046 76912066 -24468455 + L1M4 LINE L1 5664 5682 -479 1963 132 0 0 chr15 76912066 76912353 -24468168 + AluSx SINE Alu 5 291 -21 614 265 54 7 chr15 76912353 76912490 -24468031 + L1M4 LINE L1 5682 5826 -335 1879 138 13 20 chr15 76912878 76913183 -24467338 - AluJb SINE Alu -7 305 3 1965 92 96 0 chr15 76913192 76913473 -24467048 - AluSg SINE Alu -2 308 1 305 389 90 13 chr15 76913843 76914077 -24466444 + L1MEd LINE L1 850 1101 -5018 2802 189 71 0 chr15 76914096 76914616 -24465905 + LTR64 LTR ERVK 2 558 0 2187 98 3 3 chr15 76915050 76915355 -24465166 - AluSg SINE Alu -5 305 1 2019 121 6 16 chr15 76915355 76915669 -24464852 - AluSx SINE Alu 0 312 2 353 330 0 0 chr15 76915774 76915880 -24464641 + MER117 DNA MER1_type 92 197 0 1213 107 0 0 chr15 76917198 76917366 -24463155 + AluJb SINE Alu 133 300 -12 536 319 30 64 chr15 76917518 76917847 -24462674 + L2 LINE L2 2898 3215 -57 1870 120 0 32 chr15 76917996 76918280 -24462241 - AluSx SINE Alu -2 310 36 321 237 56 12 chr15 76918440 76918548 -24461973 - MIR SINE MIR -61 147 45 4533 92 16 50 chr15 76919392 76919965 -24460556 + L1PB1 LINE L1 5468 6015 -136 2054 102 0 17 chr15 76919965 76920308 -24460213 + AluSc SINE Alu 1 338 0 4533 92 16 50 chr15 76920308 76920440 -24460081 + L1PB1 LINE L1 6015 6150 -1 358 233 67 0 chr15 76920932 76921022 -24459499 + MIR SINE MIR 79 174 -88 223 297 10 130 chr15 76922701 76922893 -24457628 - MER5A DNA MER1_type -9 180 12 234 273 99 33 chr15 76923463 76923584 -24456937 - MIR3 SINE MIR -21 187 59 325 265 37 74 chr15 76923882 76924044 -24456477 + MIR3 SINE MIR 53 208 0 215 160 0 60 chr15 76924383 76924433 -24456088 + (TG)n Simple_repeat Simple_repeat 1 47 0 301 253 60 25 chr15 76925858 76925979 -24454542 - MIR SINE MIR -63 145 30 2262 189 146 12 chr15 76926103 76926596 -24453925 + MLT1F1 LTR MaLR 1 559 -8 192 331 108 34 chr15 76926704 76926852 -24453669 + MIR3 SINE MIR 48 206 -2 735 221 167 22 chr15 76926988 76927210 -24453311 + MIR SINE MIR 5 258 -4 585 279 81 0 chr15 76927294 76927466 -24453055 - MIR SINE MIR -70 192 7 2300 90 0 0 chr15 76927488 76927787 -24452734 + AluSq SINE Alu 1 299 -14 2463 81 0 0 chr15 76928223 76928521 -24452000 + AluY SINE Alu 1 298 -13 820 155 20 9 chr15 76929231 76929574 -24450947 + (CA)n Simple_repeat Simple_repeat 1 347 0 541 190 17 11 chr15 76929634 76929808 -24450713 + (CA)n Simple_repeat Simple_repeat 1 176 0 2507 115 3 3 chr15 76929808 76930172 -24450349 + THE1B LTR MaLR 1 364 0 732 150 19 0 chr15 76930187 76930347 -24450174 + (CA)n Simple_repeat Simple_repeat 2 164 0 333 151 0 41 chr15 76931189 76931262 -24449259 + MER4A LTR ERV1 58 127 -537 442 228 71 0 chr15 76931301 76931428 -24449093 - MER117 DNA MER1_type -50 147 12 285 321 188 0 chr15 76933339 76933451 -24447070 - MIR SINE MIR -12 250 118 357 324 61 14 chr15 76933588 76933736 -24446785 + L2 LINE L2 2882 3036 -277 245 316 0 68 chr15 76934212 76934345 -24446176 + MIR3 SINE MIR 67 190 -18 1500 281 73 2 chr15 76935671 76936202 -24444319 + L2 LINE L2 2088 2656 -658 531 208 0 0 chr15 76936910 76937040 -24443481 + GA-rich Low_complexity Low_complexity 2 131 0 484 245 10 17 chr15 76937953 76938167 -24442354 + LTR16A LTR ERVL 55 330 -120 220 321 12 12 chr15 76938237 76938321 -24442200 - MIR SINE MIR -89 119 36 1963 151 6 26 chr15 76938565 76938877 -24441644 - AluSx SINE Alu -6 306 1 2384 107 0 16 chr15 76938899 76939216 -24441305 - AluSx SINE Alu 0 312 1 1042 297 66 49 chr15 76939590 76940239 -24440282 + L1ME4a LINE L1 5450 6109 -12 495 243 15 29 chr15 76940674 76940810 -24439711 - MER45A DNA AcHobo 0 178 45 244 354 16 16 chr15 76940968 76941095 -24439426 + MIR SINE MIR 20 146 -116 220 236 0 18 chr15 76941596 76941651 -24438870 - MIR SINE MIR -68 140 87 208 216 0 27 chr15 76942073 76942147 -24438374 + GA-rich Low_complexity Low_complexity 1 72 0 476 132 0 158 chr15 76942627 76942741 -24437780 - MER1A DNA MER1_type 0 529 434 1246 82 0 0 chr15 76942842 76942988 -24437533 - AluSq/x SINE Alu -167 146 1 2920 123 0 0 chr15 76942988 76943396 -24437125 - MER1A DNA MER1_type -121 408 1 231 154 90 26 chr15 76943759 76943837 -24436684 - L1M LINE L1 -752 5399 5317 477 330 173 49 chr15 76943840 76944267 -24436254 - L1M4 LINE L1 -837 5309 4936 1771 132 83 7 chr15 76944267 76944556 -24435965 + AluJo SINE Alu 2 312 0 477 330 173 49 chr15 76944556 76945002 -24435519 - L1M4 LINE L1 -1210 4936 4322 1661 184 31 0 chr15 76945002 76945290 -24435231 - AluJo SINE Alu -15 297 1 477 330 173 49 chr15 76945290 76945306 -24435215 - L1M4 LINE L1 -1824 4322 4309 340 289 305 2 chr15 76945370 76945823 -24434698 + L2 LINE L2 2370 2959 -355 206 118 0 0 chr15 76945863 76945897 -24434624 + (GA)n Simple_repeat Simple_repeat 2 35 0 315 196 14 133 chr15 76946129 76946272 -24434249 - L2 LINE L2 0 3313 3188 * 401 181 19 86 chr15 76946256 76946297 -24434224 + MER91C DNA MER1_type 36 78 -62 600 179 24 167 chr15 76946297 76946548 -24433973 + MER58C DNA MER1_type 1 215 0 401 181 19 86 chr15 76946548 76946611 -24433910 + MER91C DNA MER1_type 78 133 -7 272 302 115 0 chr15 76947063 76947202 -24433319 - MER117 DNA MER1_type -36 161 7 215 280 27 0 chr15 76947870 76947945 -24432576 + MIR SINE MIR 45 121 -87 971 221 97 21 chr15 76948329 76948618 -24431903 - L1M4 LINE L1 -2234 3912 3602 243 354 10 0 chr15 76948645 76948741 -24431780 - MIR SINE MIR -15 247 151 303 265 205 8 chr15 76949052 76949169 -24431352 - L3 LINE CR1 -17 1560 1421 513 253 25 13 chr15 76949446 76949604 -24430917 + L2 LINE L2 2887 3046 -226 376 178 14 0 chr15 76950409 76950482 -24430039 + MER5A DNA MER1_type 26 99 -90 236 309 84 42 chr15 76950804 76950995 -24429526 + L2 LINE L2 2149 2347 -967 773 205 50 45 chr15 76951408 76951539 -24428982 + MER115 DNA AcHobo 488 622 -71 1115 203 14 5 chr15 76951539 76951756 -24428765 - MER20 DNA MER1_type 0 219 1 773 205 50 45 chr15 76951756 76951824 -24428697 + MER115 DNA AcHobo 622 688 -5 254 227 47 0 chr15 76952405 76952474 -24428047 + MIR SINE MIR 93 168 -40 407 223 59 14 chr15 76952476 76952582 -24427939 + MER5A DNA MER1_type 3 103 -75 224 313 136 15 chr15 76953155 76953353 -24427168 + L3 LINE CR1 1197 1418 -159 934 242 44 4 chr15 76953603 76953830 -24426691 + MIR SINE MIR 23 258 -4 377 249 22 122 chr15 76953830 76954011 -24426510 - Charlie8 DNA MER1_type -2253 164 2 271 266 62 26 chr15 76955038 76955151 -24425370 + MIR3 SINE MIR 44 160 -48 2376 161 11 7 chr15 76955204 76955644 -24424877 - L1MB3 LINE L1 -3 6180 5739 228 391 109 7 chr15 76956104 76956242 -24424279 + L2 LINE L2 3121 3272 0 210 372 104 41 chr15 76957759 76958028 -24422493 - L2 LINE L2 -93 3179 2894 2011 113 49 0 chr15 76958212 76958496 -24422025 + AluSx SINE Alu 1 298 -14 650 238 100 0 chr15 76958982 76959142 -24421379 + MER45A DNA AcHobo 3 178 0 412 261 87 60 chr15 76959156 76959340 -24421181 + MER63A DNA MER1_type 1 189 -21 604 261 57 24 chr15 76959684 76960016 -24420505 + MLT1I LTR MaLR 26 409 0 249 128 0 0 chr15 76960617 76960664 -24419857 + (GA)n Simple_repeat Simple_repeat 2 48 0 198 0 0 0 chr15 76960798 76960820 -24419701 + (CA)n Simple_repeat Simple_repeat 2 23 0 360 273 163 52 chr15 76961096 76961422 -24419099 - L2 LINE L2 -3 3269 2908 205 138 0 0 chr15 76961484 76961513 -24419008 + (TGAG)n Simple_repeat Simple_repeat 3 31 0 538 209 86 7 chr15 76961700 76961872 -24418649 + MIR3 SINE MIR 1 188 -56 1313 267 71 75 chr15 76962057 76962646 -24417875 + MER45C DNA AcHobo 42 628 -325 403 214 300 0 chr15 76962866 76963006 -24417515 - MER5A DNA MER1_type -1 188 7 473 300 64 10 chr15 76963208 76963411 -24417110 - MIR SINE MIR -33 229 17 219 159 23 0 chr15 76964292 76964336 -24416185 + CT-rich Low_complexity Low_complexity 2 46 0 358 143 0 36 chr15 76964336 76964420 -24416101 + (TTTCC)n Simple_repeat Simple_repeat 3 83 0 1188 100 0 4 chr15 76964788 76965094 -24415427 + (TTCCC)n Simple_repeat Simple_repeat 1 483 0 365 266 0 11 chr15 76965120 76965214 -24415307 - MIR3 SINE MIR -3 205 113 549 42 0 0 chr15 76965601 76965673 -24414848 + (CA)n Simple_repeat Simple_repeat 2 73 0 1691 219 110 15 chr15 76966573 76967044 -24413477 + MLT1E2 LTR MaLR 111 626 0 24 0 0 0 chr15 76967049 76967073 -24413448 + AT_rich Low_complexity Low_complexity 1 24 0 2671 231 65 8 chr15 76967079 76967785 -24412736 - L1ME2 LINE L1 -1 6163 5418 357 331 76 43 chr15 76967944 76968168 -24412353 + L2 LINE L2 2628 2866 -448 2175 126 0 28 chr15 76968168 76968485 -24412036 - AluSx SINE Alu -4 308 1 357 331 76 43 chr15 76968485 76968562 -24411959 + L2 LINE L2 2866 2939 -375 271 267 47 7 chr15 76969050 76969200 -24411321 + (TCCA)n Simple_repeat Simple_repeat 2 157 0 244 260 110 24 chr15 76969203 76969330 -24411191 - L2 LINE L2 -3 3310 3173 282 324 95 18 chr15 76969608 76969797 -24410724 - MIR3 SINE MIR -6 202 3 210 200 22 0 chr15 76970574 76970619 -24409902 - L2 LINE L2 -54 3218 3173 316 173 40 13 chr15 76970752 76970827 -24409694 + MIR SINE MIR 184 260 -2 234 238 12 50 chr15 76970865 76970945 -24409576 - L2 LINE L2 -173 3099 3023 215 31 31 0 chr15 76971577 76971609 -24408912 + (GA)n Simple_repeat Simple_repeat 1 33 0 351 281 0 0 chr15 76971869 76971958 -24408563 - MIR SINE MIR -116 146 58 188 351 53 0 chr15 76972613 76972707 -24407814 + L2 LINE L2 2564 2662 -652 288 356 93 5 chr15 76972954 76973159 -24407362 - MIR SINE MIR -20 242 20 251 114 23 0 chr15 76973397 76973441 -24407080 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 327 294 68 51 chr15 76973931 76974108 -24406413 + MIR3 SINE MIR 3 182 -26 362 296 0 0 chr15 76974109 76974190 -24406331 - L1MC4 LINE L1 -1346 6696 6616 314 261 23 34 chr15 76974143 76974231 -24406290 + L1MC4 LINE L1 6617 6703 -1339 * 231 182 30 30 chr15 76974234 76974300 -24406221 - L1MC4 LINE L1 -1340 6702 6637 219 375 55 0 chr15 76974723 76974851 -24405670 + L2 LINE L2 3138 3272 0 588 233 147 0 chr15 76976210 76976373 -24404148 + MIR SINE MIR 72 258 -4 24 0 0 0 chr15 76976378 76976402 -24404119 + AT_rich Low_complexity Low_complexity 1 24 0 207 269 0 0 chr15 76976923 76976975 -24403546 + CT-rich Low_complexity Low_complexity 2 53 0 2167 127 0 31 chr15 76976983 76977305 -24403216 - AluSx SINE Alu 0 312 1 2715 49 0 0 chr15 76977901 76978208 -24402313 - AluY SINE Alu -4 307 1 437 207 290 21 chr15 76979423 76979568 -24400953 + MER5A DNA MER1_type 6 189 0 416 295 62 8 chr15 76979758 76979887 -24400634 + MER5A DNA MER1_type 43 178 -11 320 209 0 15 chr15 76980724 76980791 -24399730 - MER5B DNA MER1_type -111 67 2 550 226 9 17 chr15 76981269 76981384 -24399137 + MER81 DNA DNA 1 114 0 185 240 80 0 chr15 76981593 76981643 -24398878 - L2 LINE L2 -1 3312 3259 444 310 82 0 chr15 76981828 76981919 -24398602 + MER5B DNA MER1_type 8 90 -88 201 39 0 0 chr15 76981919 76981945 -24398576 + (GGGGA)n Simple_repeat Simple_repeat 2 27 0 444 310 82 0 chr15 76981945 76982011 -24398510 + MER5B DNA MER1_type 90 178 0 334 301 96 29 chr15 76982858 76982994 -24397527 + MIR SINE MIR 32 176 -86 243 146 0 0 chr15 76983763 76983804 -24396717 + (TG)n Simple_repeat Simple_repeat 1 41 0 538 245 17 85 chr15 76984994 76985211 -24395310 + L1MC4a LINE L1 5684 5824 -338 220 299 0 0 chr15 76985221 76985288 -24395233 + (TA)n Simple_repeat Simple_repeat 1 67 0 259 236 0 0 chr15 76986509 76986564 -24393957 + L2 LINE L2 3258 3312 -1 200 329 77 39 chr15 76986994 76987228 -24393293 + L2 LINE L2 2615 2857 -457 308 285 75 38 chr15 76987271 76987457 -24393064 + L2 LINE L2 3075 3267 -5 206 290 0 29 chr15 76987721 76987790 -24392731 - L2 LINE L2 -594 2720 2654 703 296 97 23 chr15 76987844 76988196 -24392325 + MLT1I LTR MaLR 32 409 0 356 279 30 55 chr15 76988196 76988361 -24392160 - L2 LINE L2 -679 2635 2475 304 218 128 0 chr15 76988648 76988726 -24391795 - MIR SINE MIR -128 134 47 808 278 37 25 chr15 76989298 76989543 -24390978 + MIR SINE MIR 14 261 -1 288 295 70 61 chr15 76990674 76991095 -24389426 - L2 LINE L2 -96 3217 2745 334 287 104 0 chr15 76991392 76991507 -24389014 + L2 LINE L2 3145 3271 -1 209 143 143 0 chr15 76992039 76992088 -24388433 + MIR SINE MIR 123 178 -84 358 337 101 0 chr15 76993744 76993899 -24386622 + MIR3 SINE MIR 25 197 -11 570 284 147 10 chr15 76993957 76994154 -24386367 - MIR SINE MIR -5 257 34 326 269 42 50 chr15 76994779 76994898 -24385623 + MIR3 SINE MIR 83 200 -8 24 32 0 0 chr15 76995111 76995142 -24385379 + GC_rich Low_complexity Low_complexity 1 31 0 225 94 0 0 chr15 76996542 76996560 -24383961 + (CA)n Simple_repeat Simple_repeat 1 50 0 225 94 0 0 chr15 76996560 76996592 -24383929 + (CA)n Simple_repeat Simple_repeat 2 33 0 189 74 0 0 chr15 76996991 76997018 -24383503 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 904 57 60 12 chr15 76997488 76997832 -24382689 + (CA)n Simple_repeat Simple_repeat 1 360 0 500 72 94 0 chr15 76997859 76997997 -24382524 + (CA)n Simple_repeat Simple_repeat 1 151 0 266 92 79 13 chr15 76998023 76998099 -24382422 + (CA)n Simple_repeat Simple_repeat 1 81 0 464 76 76 35 chr15 76998101 76998273 -24382248 + (CACAC)n Simple_repeat Simple_repeat 1 179 0 346 77 39 26 chr15 76998307 76998385 -24382136 + (CA)n Simple_repeat Simple_repeat 1 79 0 733 231 20 50 chr15 76998833 76999032 -24381489 - MIR SINE MIR -39 223 31 306 205 370 8 chr15 76999189 76999316 -24381205 - MER5B DNA MER1_type -4 174 2 233 227 277 17 chr15 76999330 76999449 -24381072 + MER5A DNA MER1_type 9 158 -31 * 611 203 174 0 chr15 76999345 76999483 -24381038 - MER5A DNA MER1_type -20 169 8 204 40 0 0 chr15 76999517 76999542 -24380979 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 376 266 53 0 chr15 76999549 76999643 -24380878 - L2 LINE L2 -5 3267 3169 1930 115 11 4 chr15 76999734 77000003 -24380518 + AluSx SINE Alu 40 310 -2 1006 198 6 0 chr15 77000014 77000191 -24380330 + MER5B DNA MER1_type 1 178 0 295 281 160 0 chr15 77000743 77000889 -24379632 - MIR SINE MIR -68 140 26 425 18 0 18 chr15 77001179 77001234 -24379287 + (TG)n Simple_repeat Simple_repeat 2 55 0 446 296 97 38 chr15 77001782 77002279 -24378242 - L1ME LINE L1 -338 5783 5258 1733 135 26 32 chr15 77002319 77002582 -24377939 - L1MB3 LINE L1 0 6183 5921 3266 160 35 0 chr15 77002582 77003119 -24377402 + MER41D LTR ERV1 1 556 -1 1733 135 26 32 chr15 77003119 77003167 -24377354 - L1MB3 LINE L1 -262 5921 5874 254 342 42 28 chr15 77003326 77004048 -24376473 - L1ME LINE L1 -1112 5034 4303 1219 304 119 41 chr15 77004130 77005038 -24375483 - L1ME LINE L1 -2286 3860 2579 420 170 27 80 chr15 77005495 77005607 -24374914 + LTR33 LTR ERVL 1 106 -415 473 206 16 24 chr15 77005763 77005889 -24374632 + LTR33 LTR ERVL 397 521 0 263 320 203 7 chr15 77005889 77006042 -24374479 - MIR3 SINE MIR -24 184 2 1375 204 118 55 chr15 77006677 77007046 -24373475 - MSTB2 LTR MaLR 0 457 58 2217 132 0 0 chr15 77007046 77007350 -24373171 - AluSx SINE Alu -8 304 1 1375 204 118 55 chr15 77007350 77007397 -24373124 - MSTB2 LTR MaLR -399 58 15 904 249 88 52 chr15 77007518 77007904 -24372617 - MLT1J2 LTR MaLR -31 419 20 211 274 0 0 chr15 77007911 77007962 -24372559 - MIR SINE MIR -147 115 65 212 300 67 11 chr15 77008787 77008877 -24371644 - MIR SINE MIR -86 176 82 220 355 65 43 chr15 77008916 77009102 -24371419 - MIR3 SINE MIR -3 205 16 334 275 33 50 chr15 77009455 77009575 -24370946 + MIR3 SINE MIR 8 125 -83 211 314 15 51 chr15 77009816 77009953 -24370568 + L2 LINE L2 2842 2973 -299 1074 256 151 15 chr15 77010195 77010652 -24369869 - LTR33 LTR ERVL 0 521 3 529 280 145 19 chr15 77011208 77011422 -24369099 + MLT1K LTR MaLR 10 250 -338 601 158 11 0 chr15 77011545 77011640 -24368881 - AluS SINE Alu -215 97 2 1192 281 77 35 chr15 77012025 77012802 -24367719 + HAL1 LINE L1 777 1586 -921 787 222 154 8 chr15 77012940 77013174 -24367347 + MLT1K LTR MaLR 321 588 0 333 0 0 0 chr15 77014473 77014510 -24366011 + (TG)n Simple_repeat Simple_repeat 1 37 0 24 0 0 0 chr15 77015000 77015024 -24365497 + AT_rich Low_complexity Low_complexity 1 24 0 1889 214 32 37 chr15 77015029 77015590 -24364931 - L1M4 LINE L1 -2031 4115 3558 3359 230 38 12 chr15 77015591 77016617 -24363904 + L1M4 LINE L1 4110 5162 -984 1714 273 32 13 chr15 77016602 77017137 -24363384 + L1MA7 LINE L1 5597 6145 -214 * 825 150 0 0 chr15 77017160 77017280 -24363241 - AluSg/x SINE Alu -8 302 183 1627 104 0 35 chr15 77017280 77017510 -24363011 - AluSq SINE Alu -91 222 1 577 223 22 0 chr15 77017510 77017649 -24362872 + L1MD2 LINE L1 6208 6349 -10 34 42 0 0 chr15 77017744 77017792 -24362729 + AT_rich Low_complexity Low_complexity 1 48 0 33 25 0 0 chr15 77017863 77017903 -24362618 + AT_rich Low_complexity Low_complexity 1 40 0 460 93 0 13 chr15 77017919 77017994 -24362527 - L1MA3 LINE L1 -1 6304 6231 303 283 117 34 chr15 77018081 77018346 -24362175 - HAL1 LINE L1 -86 2421 2135 348 303 45 34 chr15 77018455 77018633 -24361888 - HAL1 LINE L1 -350 2157 1978 1262 232 99 8 chr15 77018664 77019048 -24361473 - HAL1 LINE L1 -696 1811 1393 1153 257 98 39 chr15 77019480 77019939 -24360582 - MLT1J LTR MaLR -20 491 6 254 253 133 0 chr15 77020283 77020366 -24360155 + MER81 DNA DNA 1 94 -20 * 651 147 0 0 chr15 77020364 77020459 -24360062 + MER81 DNA DNA 16 110 -4 236 353 128 6 chr15 77020461 77020617 -24359904 + MIR SINE MIR 10 184 -78 321 180 0 0 chr15 77020729 77020790 -24359731 - Charlie1 DNA MER1_type -300 2461 2401 594 291 48 4 chr15 77020795 77021022 -24359499 + HAL1 LINE L1 1563 1799 -708 413 284 0 0 chr15 77021152 77021279 -24359242 + HAL1 LINE L1 2038 2164 -343 228 279 15 66 chr15 77021321 77021457 -24359064 + HAL1b LINE L1 746 874 -474 375 297 131 11 chr15 77021544 77021719 -24358802 + HAL1 LINE L1 2176 2371 -136 33 0 0 0 chr15 77021772 77021805 -24358716 + AT_rich Low_complexity Low_complexity 1 33 0 491 355 82 27 chr15 77022815 77023105 -24357416 + LTR67 LTR ERVL 3 276 -281 1630 164 93 31 chr15 77023105 77023273 -24357248 - THE1C LTR MaLR 0 375 219 204 40 0 0 chr15 77023273 77023298 -24357223 + (GA)n Simple_repeat Simple_repeat 1 25 0 1630 164 93 31 chr15 77023298 77023482 -24357039 - THE1C LTR MaLR -156 219 1 491 355 82 27 chr15 77023482 77023717 -24356804 + LTR67 LTR ERVL 276 557 0 2483 121 28 8 chr15 77024660 77025016 -24355505 - THE1B LTR MaLR 0 364 2 2850 82 25 28 chr15 77025017 77025454 -24355067 - THE1B-int LTR MaLR 0 1580 1145 1020 206 5 37 chr15 77026091 77026305 -24354216 - MER63A DNA MER1_type 0 210 4 211 307 0 91 chr15 77027224 77027312 -24353209 - MIR SINE MIR -78 184 105 684 223 27 43 chr15 77027546 77027730 -24352791 + MER91A DNA MER1_type 1 181 -15 248 318 155 0 chr15 77027845 77027974 -24352547 + MIR3 SINE MIR 46 194 -14 598 326 58 5 chr15 77028603 77028827 -24351694 + MIR SINE MIR 26 261 -1 417 294 43 54 chr15 77029332 77029516 -24351005 - MIR SINE MIR -41 221 40 336 269 115 0 chr15 77029836 77029940 -24350581 + L2 LINE L2 3171 3286 -27 273 220 66 88 chr15 77030058 77030149 -24350372 + L2 LINE L2 3225 3313 0 740 283 53 63 chr15 77030707 77031103 -24349418 + L2 LINE L2 2921 3312 -1 650 319 54 0 chr15 77031541 77031726 -24348795 - MER91A DNA MER1_type -1 195 1 469 345 90 27 chr15 77031908 77032241 -24348280 - L2 LINE L2 -25 3247 2894 335 310 101 52 chr15 77032280 77032548 -24347973 + L2 LINE L2 2990 3270 -2 804 241 178 30 chr15 77032894 77033259 -24347262 - MLT1L LTR MaLR -75 540 122 248 241 19 0 chr15 77033936 77033990 -24346531 + L2 LINE L2 2282 2336 -978 600 203 89 98 chr15 77034011 77034322 -24346199 - MLT1H LTR MaLR -227 322 16 841 248 120 12 chr15 77034488 77034730 -24345791 - LTR16C LTR ERVL 0 491 224 568 237 94 72 chr15 77035094 77035562 -24344959 + MLT1H LTR MaLR 39 590 0 302 358 14 23 chr15 77036808 77037023 -24343498 - L1ME3A LINE L1 -275 5895 5683 737 347 76 14 chr15 77038776 77039208 -24341313 + ERVL LTR ERVL 4274 4732 -1032 1181 248 135 26 chr15 77039500 77039879 -24340642 - LTR16C LTR ERVL -2 489 70 558 224 72 0 chr15 77040357 77040482 -24340039 - LTR16C LTR ERVL 0 491 358 863 283 25 25 chr15 77040796 77041033 -24339488 - LTR16C LTR ERVL -150 341 105 304 359 17 34 chr15 77041140 77041377 -24339144 + ERVL LTR ERVL 5043 5275 -489 3457 125 62 5 chr15 77041386 77041947 -24338574 + LTR49 LTR ERV1 3 595 0 301 56 74 0 chr15 77042428 77042482 -24338039 + T-rich Low_complexity Low_complexity 4 61 0 335 304 22 30 chr15 77042693 77042828 -24337693 + LTR16C LTR ERVL 305 438 -53 1930 206 76 7 chr15 77043128 77043560 -24336961 + LTR40b LTR ERVL 1 462 0 444 290 24 16 chr15 77043650 77043774 -24336747 - L2 LINE L2 -3 3310 3186 421 382 48 5 chr15 77043957 77044164 -24336357 + MIR SINE MIR 30 245 -17 1689 76 0 14 chr15 77044527 77044750 -24335771 + AluY SINE Alu 1 220 -91 3655 162 45 20 chr15 77044824 77045514 -24335007 + MER67C LTR ERV1 4 710 0 292 151 68 82 chr15 77045877 77045950 -24334571 - MER91C DNA MER1_type -37 103 32 278 343 56 19 chr15 77046172 77046280 -24334241 + MIR SINE MIR 61 172 -90 189 319 121 9 chr15 77046317 77046433 -24334088 + L2 LINE L2 3021 3149 -164 252 175 25 42 chr15 77046433 77046553 -24333968 + CT-rich Low_complexity Low_complexity 3 120 0 193 182 0 0 chr15 77046560 77046593 -24333928 + L2 LINE L2 3182 3214 -99 1213 83 6 44 chr15 77047860 77048041 -24332480 - AluSq SINE Alu -19 294 121 6573 108 22 0 chr15 77048150 77049045 -24331476 - THE1B-int LTR MaLR -665 915 1 2267 113 26 71 chr15 77049045 77049426 -24331095 - THE1B LTR MaLR 0 364 1 207 0 0 0 chr15 77049561 77049584 -24330937 + (TG)n Simple_repeat Simple_repeat 1 23 0 611 301 61 75 chr15 77049898 77050260 -24330261 + MLT1K LTR MaLR 9 365 -223 849 303 66 8 chr15 77050275 77050519 -24330002 - MIR SINE MIR -1 261 4 459 254 169 11 chr15 77050605 77050782 -24329739 + MLT1K LTR MaLR 384 588 0 762 202 11 28 chr15 77050823 77051001 -24329520 + MER3 DNA MER1_type 35 209 0 315 211 0 0 chr15 77051045 77051102 -24329419 - MLT1A1 LTR MaLR 0 374 318 6553 107 25 21 chr15 77051102 77052214 -24328307 - L1MA4A LINE L1 -4 6299 5171 1455 181 27 20 chr15 77052214 77052506 -24328015 - MLT1A1 LTR MaLR -42 323 30 2119 129 35 30 chr15 77052523 77052896 -24327625 - THE1C LTR MaLR 0 375 1 10498 115 29 22 chr15 77052896 77054466 -24326055 - THE1C-int LTR MaLR 0 1580 1 1223 127 35 10 chr15 77054466 77054681 -24325840 - THE1C LTR MaLR 0 375 137 407 313 108 19 chr15 77054697 77054911 -24325610 + L1MC4a LINE L1 3242 3474 -2672 1207 126 14 0 chr15 77055067 77055274 -24325247 + L1MA6 LINE L1 6091 6300 0 442 338 56 14 chr15 77055300 77055587 -24324934 + L1MC4a LINE L1 3545 3844 -2302 269 213 0 74 chr15 77055641 77055763 -24324758 + A-rich Low_complexity Low_complexity 4 116 0 382 253 46 0 chr15 77055881 77055968 -24324553 + L1MC4 LINE L1 6613 6703 -1339 817 161 52 26 chr15 77055969 77056124 -24324397 - FRAM SINE Alu -18 158 1 471 251 93 122 chr15 77056125 77056290 -24324231 + L1MC4a LINE L1 3999 4154 -1992 2176 149 75 7 chr15 77056290 77056706 -24323815 + L1MB1 LINE L1 5721 6164 -4 471 251 93 122 chr15 77056706 77056819 -24323702 + L1MC4a LINE L1 4154 4269 -1877 1646 162 0 32 chr15 77056830 77057114 -24323407 + AluSx SINE Alu 1 275 -37 252 0 0 0 chr15 77057118 77057146 -24323375 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 829 308 117 5 chr15 77057240 77057675 -24322846 + L1MC4a LINE L1 5374 5857 -1951 1840 182 25 25 chr15 77057675 77058033 -24322488 - MLT1A1 LTR MaLR 0 365 8 268 228 11 87 chr15 77058363 77058455 -24322066 - L2 LINE L2 -38 3275 3191 325 252 35 5 chr15 77058470 77058583 -24321938 + MER5A DNA MER1_type 9 182 -7 203 322 0 0 chr15 77058863 77058922 -24321599 + L2 LINE L2 2613 2671 -643 273 258 191 0 chr15 77059705 77059794 -24320727 - MIR SINE MIR -65 143 38 608 262 89 0 chr15 77059826 77060028 -24320493 - L1ME3 LINE L1 -3 6159 5940 284 273 152 10 chr15 77060122 77060221 -24320300 - MIR SINE MIR 0 262 150 211 235 20 0 chr15 77060232 77060283 -24320238 + CT-rich Low_complexity Low_complexity 2 53 0 1557 184 105 173 chr15 77060292 77060939 -24319582 - MLT2F LTR ERVL -57 606 4 306 197 94 77 chr15 77060944 77061061 -24319460 - MIR SINE MIR -123 139 21 354 289 9 9 chr15 77061183 77061297 -24319224 + MIR SINE MIR 79 192 -70 200 298 21 0 chr15 77062308 77062355 -24318166 - L2 LINE L2 -25 3247 3200 543 265 143 5 chr15 77062372 77062595 -24317926 - MER112 DNA MER1_type -6 254 1 272 310 96 43 chr15 77062656 77062843 -24317678 + MIR SINE MIR 47 243 -19 198 376 47 24 chr15 77062883 77063138 -24317383 - L2 LINE L2 -175 3097 2837 1305 201 98 49 chr15 77063227 77063575 -24316946 + MLT1A1 LTR MaLR 1 365 0 330 130 0 72 chr15 77063659 77063728 -24316793 - L1PA10 LINE L1 0 6168 6105 221 285 51 82 chr15 77063845 77064003 -24316518 + L3 LINE CR1 1407 1559 -18 292 337 51 28 chr15 77064356 77064534 -24315987 + MIR SINE MIR 20 201 -61 2521 240 31 7 chr15 77065253 77065832 -24314689 + MLT1E LTR MaLR 1 593 0 592 269 142 20 chr15 77066125 77066478 -24314043 - L1MC4a LINE L1 -1880 5928 5533 846 176 13 13 chr15 77066805 77067043 -24313478 + CT-rich Low_complexity Low_complexity 1 238 0 224 71 0 0 chr15 77067044 77067072 -24313449 + (TC)n Simple_repeat Simple_repeat 1 28 0 190 224 0 153 chr15 77067423 77067508 -24313013 + MIR SINE MIR 121 192 -70 223 423 20 12 chr15 77067610 77067858 -24312663 + L2 LINE L2 2412 2661 -653 887 260 129 54 chr15 77068014 77068190 -24312331 + MLT1L LTR MaLR 111 273 -238 767 183 0 29 chr15 77068190 77068327 -24312194 - FLAM_A SINE Alu 0 133 1 887 260 129 54 chr15 77068327 77068608 -24311913 + MLT1L LTR MaLR 273 502 -9 1212 159 155 16 chr15 77068883 77069179 -24311342 - MSTA LTR MaLR -3 425 3 206 316 34 17 chr15 77069284 77069401 -24311120 - L2 LINE L2 -650 2664 2546 1814 185 10 61 chr15 77070461 77070855 -24309666 - MLT1A2 LTR MaLR 0 374 1 525 250 250 8 chr15 77070931 77071175 -24309346 - L2 LINE L2 0 3313 3011 753 285 191 23 chr15 77071175 77071572 -24308949 + LTR16B LTR ERVL 1 464 0 367 302 0 17 chr15 77071572 77071688 -24308833 - L2 LINE L2 -298 3015 2902 675 171 9 0 chr15 77071701 77071812 -24308709 - LTR40b LTR ERVL -26 436 325 707 221 38 6 chr15 77071814 77071972 -24308549 - MLT1H LTR MaLR -386 163 1 1237 183 0 35 chr15 77072081 77072338 -24308183 - AluJb SINE Alu -11 301 54 288 310 86 17 chr15 77072793 77072967 -24307554 + MIR3 SINE MIR 10 195 -13 235 277 84 12 chr15 77073352 77073435 -24307086 + MIR SINE MIR 104 192 -70 414 273 118 12 chr15 77073497 77073658 -24306863 + MIR SINE MIR 84 261 -1 22 35 0 0 chr15 77074024 77074053 -24306468 + AT_rich Low_complexity Low_complexity 1 29 0 312 236 108 45 chr15 77074075 77074232 -24306289 + HAL1 LINE L1 2252 2418 -89 22 70 0 0 chr15 77074317 77074360 -24306161 + AT_rich Low_complexity Low_complexity 1 43 0 606 184 0 0 chr15 77075174 77075272 -24305249 + MIR SINE MIR 50 147 -115 514 250 83 30 chr15 77077437 77077605 -24302916 + MIR SINE MIR 29 205 -57 698 236 68 36 chr15 77077606 77077826 -24302695 + MIR SINE MIR 20 246 -16 649 278 7 0 chr15 77077893 77078037 -24302484 - MIR SINE MIR 0 262 118 200 374 41 20 chr15 77078297 77078444 -24302077 - L2 LINE L2 -282 2990 2841 387 218 224 14 chr15 77078484 77078631 -24301890 + MER5B DNA MER1_type 1 178 0 567 221 81 13 chr15 77078691 77078840 -24301681 - MER3 DNA MER1_type -43 166 8 233 341 73 55 chr15 77078848 77079191 -24301330 - L2 LINE L2 -525 2789 2441 936 204 18 53 chr15 77079215 77079441 -24301080 + MER20 DNA MER1_type 1 218 -1 212 284 30 0 chr15 77079542 77079609 -24300912 - L2 LINE L2 -1003 2311 2243 185 381 42 0 chr15 77079892 77080010 -24300511 - L3 LINE CR1 -346 1231 1109 1501 212 111 21 chr15 77080154 77080578 -24299943 + MLT1C LTR MaLR 6 467 0 390 272 228 11 chr15 77080885 77081069 -24299452 - MIR SINE MIR -1 261 38 534 234 175 19 chr15 77081460 77081614 -24298907 + MER5A DNA MER1_type 9 186 -3 264 193 70 0 chr15 77082609 77082666 -24297855 + MIR SINE MIR 106 166 -96 529 188 17 116 chr15 77083354 77083399 -24297122 + MER69 DNA AcHobo 69 117 -2409 1805 133 7 7 chr15 77083399 77083669 -24296852 - AluSx SINE Alu -6 306 37 529 188 17 116 chr15 77083669 77083804 -24296717 + MER69 DNA AcHobo 117 231 -2295 576 242 84 35 chr15 77083813 77084040 -24296481 - MER69 DNA AcHobo -2057 469 232 2915 192 109 28 chr15 77084155 77085014 -24295507 + MER69 DNA AcHobo 1451 2395 -131 2240 107 3 7 chr15 77085014 77085312 -24295209 + AluSx SINE Alu 1 297 -15 2915 192 109 28 chr15 77085312 77085399 -24295122 + MER69 DNA AcHobo 2395 2474 -52 195 188 78 31 chr15 77085517 77085581 -24294940 + L2 LINE L2 3025 3091 -181 948 96 5 43 chr15 77085877 77086003 -24294518 + (TTTC)n Simple_repeat Simple_repeat 1 301 0 948 96 5 43 chr15 77086003 77086190 -24294331 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1795 178 3 16 chr15 77086261 77086564 -24293957 - AluJo SINE Alu 0 312 14 298 269 20 81 chr15 77087107 77087256 -24293265 + MIR SINE MIR 112 251 -11 236 266 32 64 chr15 77087773 77087867 -24292654 + MIR3 SINE MIR 98 188 -20 504 191 88 29 chr15 77088120 77088256 -24292265 + MIR3 SINE MIR 61 204 -4 640 191 12 0 chr15 77088710 77088878 -24291643 + CT-rich Low_complexity Low_complexity 1 170 0 1821 175 3 29 chr15 77088885 77089200 -24291321 - AluJb SINE Alu -5 307 1 585 315 43 5 chr15 77089435 77089619 -24290902 - MIR SINE MIR -18 244 54 240 194 56 56 chr15 77090510 77090582 -24289939 - L2 LINE L2 0 3313 3242 230 298 48 12 chr15 77090586 77090670 -24289851 + L2 LINE L2 3227 3313 0 289 343 28 21 chr15 77090673 77090816 -24289705 - L3 LINE CR1 -631 946 803 1174 266 122 13 chr15 77090827 77091294 -24289227 + LTR33 LTR ERVL 2 519 -2 414 318 96 38 chr15 77091333 77091385 -24289136 - MIR SINE MIR -8 254 206 2020 118 46 26 chr15 77091385 77091690 -24288831 - AluSx SINE Alu -1 311 1 1326 197 61 48 chr15 77091693 77091987 -24288534 - AluJo SINE Alu -14 298 1 414 318 96 38 chr15 77091987 77092169 -24288352 - MIR SINE MIR -57 205 2 357 342 224 12 chr15 77092179 77092518 -24288003 - L3 LINE CR1 -831 746 336 748 215 7 0 chr15 77094170 77094314 -24286207 - MER58B DNA MER1_type -2 339 195 210 0 71 48 chr15 77094709 77094751 -24285770 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1108 133 19 0 chr15 77094754 77094912 -24285609 - AluSq SINE Alu -24 289 129 342 293 27 69 chr15 77096202 77096390 -24284131 - MER5A DNA MER1_type -2 187 8 526 279 13 38 chr15 77096207 77096365 -24284156 + MER5B DNA MER1_type 7 160 -18 545 279 32 70 chr15 77096439 77096751 -24283770 - MLT1I LTR MaLR -10 399 100 1031 167 0 0 chr15 77097370 77097532 -24282989 + FRAM SINE Alu 1 162 -14 213 214 0 0 chr15 77097610 77097652 -24282869 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 254 328 81 32 chr15 77097764 77098136 -24282385 - L1M4 LINE L1 -1894 4252 3863 257 132 0 94 chr15 77098451 77098504 -24282017 - MER94 DNA DNA -85 49 2 334 306 12 25 chr15 77098891 77099051 -24281470 + GA-rich Low_complexity Low_complexity 2 159 0 1083 45 0 0 chr15 77099593 77099726 -24280795 + L1PA4 LINE L1 6020 6152 -3 313 271 0 0 chr15 77099730 77099826 -24280695 + A-rich Low_complexity Low_complexity 1 96 0 1997 192 32 48 chr15 77100011 77100486 -24280035 - MLT1C LTR MaLR 0 467 1 303 254 9 55 chr15 77101116 77101226 -24279295 - MER102b DNA MER1_type 0 341 237 291 264 0 69 chr15 77101636 77101723 -24278798 + MIR SINE MIR 47 127 -135 1379 243 92 44 chr15 77101725 77102244 -24278277 - MLT1H1 LTR MaLR 0 555 12 3784 105 12 5 chr15 77102255 77102828 -24277693 - L1MA2 LINE L1 0 6304 5728 1165 66 18 0 chr15 77102924 77103091 -24277430 + (TTTC)n Simple_repeat Simple_repeat 3 172 0 1100 122 0 30 chr15 77103091 77103255 -24277266 - AluSp SINE Alu -32 281 123 22 0 0 0 chr15 77103296 77103318 -24277203 + AT_rich Low_complexity Low_complexity 1 22 0 1090 68 15 0 chr15 77103318 77103450 -24277071 - AluSp SINE Alu -179 134 1 370 243 35 21 chr15 77103476 77103620 -24276901 - L1ME LINE L1 -374 5747 5602 207 0 0 0 chr15 77104406 77104429 -24276092 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 459 281 36 52 chr15 77104496 77104688 -24275833 + MIR3 SINE MIR 17 205 -3 1876 176 11 34 chr15 77104828 77105181 -24275340 - MLT1A1 LTR MaLR -18 347 3 631 240 184 4 chr15 77105206 77105439 -24275082 - LTR16C LTR ERVL 0 491 217 927 124 0 0 chr15 77106169 77106290 -24274231 + FRAM SINE Alu 25 145 -31 182 200 0 25 chr15 77106917 77106957 -24273564 - MIR SINE MIR -138 70 32 602 283 14 0 chr15 77107362 77107507 -24273014 - L2 LINE L2 0 3313 3167 190 379 164 11 chr15 77107883 77108060 -24272461 + L2 LINE L2 3066 3269 -3 251 288 134 32 chr15 77109138 77109266 -24271255 + MIR SINE MIR 19 158 -55 21 36 0 0 chr15 77110115 77110143 -24270378 + AT_rich Low_complexity Low_complexity 1 28 0 215 320 95 7 chr15 77110353 77110500 -24270021 + L2 LINE L2 2830 2989 -283 184 282 39 13 chr15 77110557 77110635 -24269886 + L2 LINE L2 3193 3272 0 226 258 135 11 chr15 77111170 77111259 -24269262 + MIR3 SINE MIR 85 184 -24 442 340 59 15 chr15 77111787 77111990 -24268531 - MIR SINE MIR -48 214 3 * 497 303 24 6 chr15 77111990 77112127 -24268394 - MIR SINE MIR -76 186 47 573 315 28 11 chr15 77112135 77112316 -24268205 - MIR SINE MIR -49 213 30 43 35 0 0 chr15 77112807 77112864 -24267657 + AT_rich Low_complexity Low_complexity 1 57 0 370 252 143 8 chr15 77114070 77114189 -24266332 + MER5B DNA MER1_type 1 135 -43 528 174 92 28 chr15 77114277 77114386 -24266135 - MER5B DNA MER1_type -53 125 10 185 308 8 92 chr15 77114450 77114570 -24265951 + MIR3 SINE MIR 76 185 -23 732 231 26 88 chr15 77115095 77115368 -24265153 - MIR SINE MIR -4 258 3 232 333 170 7 chr15 77115474 77115621 -24264900 - MIR SINE MIR -80 182 12 358 247 11 32 chr15 77115651 77115744 -24264777 + L2 LINE L2 3217 3307 -6 256 247 0 67 chr15 77116777 77116866 -24263655 - MIR SINE MIR -119 143 61 * 329 382 54 35 chr15 77116863 77117122 -24263399 + L2 LINE L2 3009 3272 0 543 307 86 16 chr15 77117443 77117687 -24262834 - MIR SINE MIR 0 262 2 258 286 14 14 chr15 77117778 77117848 -24262673 - MIR SINE MIR -173 89 20 559 213 87 0 chr15 77118198 77118325 -24262196 + MER45A DNA AcHobo 40 177 -1 327 189 3 0 chr15 77118758 77118826 -24261695 - FLAM_A SINE Alu -3 130 70 433 249 124 45 chr15 77119015 77119192 -24261329 + L1ME LINE L1 4890 5080 -1066 1908 166 0 19 chr15 77119198 77119506 -24261015 - AluJo SINE Alu -10 302 1 853 213 6 0 chr15 77119652 77119821 -24260700 + MER3 DNA MER1_type 40 209 0 464 309 146 21 chr15 77119881 77120312 -24260209 + L1ME LINE L1 5276 5760 -361 616 226 71 24 chr15 77120397 77120609 -24259912 - L1ME LINE L1 -332 5789 5568 1844 247 107 9 chr15 77120651 77121182 -24259339 - MLT1G1 LTR MaLR -12 583 1 231 188 0 0 chr15 77122340 77122388 -24258133 + (TTCA)n Simple_repeat Simple_repeat 2 49 0 259 291 52 122 chr15 77122403 77122616 -24257905 - L2 LINE L2 -3 3269 3072 216 289 62 21 chr15 77127964 77128061 -24252460 - L2 LINE L2 -30 3242 3142 4744 127 35 45 chr15 77128539 77128634 -24251887 - L1MB1 LINE L1 -7 6161 6067 2316 108 0 22 chr15 77128634 77128949 -24251572 - AluSx SINE Alu -4 308 1 971 117 0 0 chr15 77128951 77129079 -24251442 - AluJo/FLAM SINE Alu -174 128 1 4744 127 35 45 chr15 77129079 77129883 -24250638 - L1MB1 LINE L1 -102 6066 5268 232 333 63 0 chr15 77130433 77130496 -24250025 - L3 LINE CR1 -1200 377 311 579 282 0 0 chr15 77130643 77130792 -24249729 + MIR SINE MIR 113 261 -1 226 344 69 32 chr15 77130860 77131049 -24249472 - L2 LINE L2 -5 3308 3113 180 0 0 0 chr15 77131125 77131145 -24249376 + (T)n Simple_repeat Simple_repeat 1 20 0 289 281 216 22 chr15 77131394 77131533 -24248988 + L2 LINE L2 2587 2752 -562 730 331 75 17 chr15 77131544 77131903 -24248618 + ERVL LTR ERVL 4779 5158 -606 1214 121 15 47 chr15 77133326 77133548 -24246973 + MER20 DNA MER1_type 2 219 0 2597 195 41 7 chr15 77133705 77134348 -24246173 - L1M2c LINE L1 -4516 2203 1622 1027 221 57 53 chr15 77134348 77134629 -24245892 + MLT1A1 LTR MaLR 1 282 -83 894 107 0 8 chr15 77134638 77134769 -24245752 - AluSq/x SINE Alu -171 141 12 348 306 106 22 chr15 77134788 77134968 -24245553 + L1ME LINE L1 3583 3777 -2369 351 339 91 31 chr15 77135777 77136031 -24244490 + L1ME LINE L1 4060 4328 -1818 1628 269 111 14 chr15 77136202 77136734 -24243787 + MLT1G1 LTR MaLR 1 538 -11 459 250 75 28 chr15 77136775 77136987 -24243534 + L1ME LINE L1 5568 5789 -332 488 245 0 0 chr15 77137648 77137746 -24242775 - MIR SINE MIR -115 147 50 237 303 19 43 chr15 77139088 77139250 -24241271 + GA-rich Low_complexity Low_complexity 2 159 0 838 135 0 0 chr15 77139792 77139925 -24240596 + L1PA4 LINE L1 6020 6152 -3 227 289 41 0 chr15 77139929 77140026 -24240495 + A-rich Low_complexity Low_complexity 6 106 0 349 77 292 0 chr15 77140220 77140285 -24240236 + THE1C LTR MaLR 289 372 -3 645 255 95 61 chr15 77140690 77140842 -24239679 - MLT1L LTR MaLR -165 450 305 706 187 0 43 chr15 77140842 77140981 -24239540 + FLAM_A SINE Alu 1 133 0 645 255 95 61 chr15 77140981 77141154 -24239367 - MLT1L LTR MaLR -310 305 114 2899 225 54 32 chr15 77141457 77142578 -24237943 + L1ME1 LINE L1 4903 6206 -128 1005 164 5 45 chr15 77142578 77142779 -24237742 + L1PA8A LINE L1 5939 6131 0 2899 225 54 32 chr15 77142779 77142909 -24237612 + L1ME1 LINE L1 6206 6332 -2 235 304 52 17 chr15 77143035 77143150 -24237371 + LTR16A1 LTR ERVL 7 125 -332 845 244 29 55 chr15 77143493 77143767 -24236754 + MLT1A1 LTR MaLR 16 282 -83 825 119 0 8 chr15 77143781 77143907 -24236614 - AluSq/x SINE Alu -176 136 12 430 302 68 37 chr15 77143926 77144168 -24236353 + L1 LINE L1 3583 3845 -2301 332 304 89 36 chr15 77144169 77144337 -24236184 + L1 LINE L1 3907 4083 -2063 551 294 84 65 chr15 77144372 77144467 -24236054 + L1 LINE L1 4274 4366 -1780 2551 139 11 28 chr15 77144467 77144900 -24235621 - MSTB LTR MaLR 0 426 1 551 294 84 65 chr15 77144900 77145281 -24235240 + L1 LINE L1 4366 4759 -1387 381 318 29 38 chr15 77145304 77145619 -24234902 + L1 LINE L1 4735 5046 -1100 2219 88 0 31 chr15 77146008 77146325 -24234196 + AluY SINE Alu 1 307 -4 225 298 43 0 chr15 77146514 77146608 -24233913 + L1M4 LINE L1 4485 4582 -1564 1030 189 11 0 chr15 77146760 77146945 -24233576 - MER5A DNA MER1_type 0 189 3 390 42 0 0 chr15 77147161 77147209 -24233312 + (TG)n Simple_repeat Simple_repeat 1 48 0 405 311 102 61 chr15 77147295 77147658 -24232863 + L1M4 LINE L1 4584 4961 -1185 369 311 71 2 chr15 77147832 77147983 -24232538 - MIR SINE MIR -58 150 25 2634 102 8 11 chr15 77148340 77148714 -24231807 + THE1C LTR MaLR 3 375 0 526 274 86 18 chr15 77148784 77149011 -24231510 + MIR SINE MIR 18 256 -6 310 266 12 46 chr15 77149371 77149468 -24231053 - MIR SINE MIR -65 143 55 205 270 68 101 chr15 77150195 77150343 -24230178 - L2 LINE L2 -527 2787 2645 300 294 171 19 chr15 77152749 77152960 -24227561 - MIR SINE MIR 0 262 20 351 258 183 0 chr15 77154993 77155086 -24225435 - MER81 DNA DNA 0 114 5 2057 133 0 0 chr15 77155243 77155537 -24224984 - AluSx SINE Alu -18 294 1 275 208 0 0 chr15 77156175 77156228 -24224293 - L2 LINE L2 -1036 2278 2226 256 232 87 0 chr15 77156811 77156880 -24223641 + MIR3 SINE MIR 134 208 0 217 314 144 17 chr15 77156977 77157095 -24223426 - L2 LINE L2 0 3272 3140 1829 126 3 7 chr15 77157241 77157526 -24222995 + AluSq SINE Alu 23 306 -7 423 0 0 0 chr15 77157875 77157922 -24222599 + (CA)n Simple_repeat Simple_repeat 2 48 0 368 242 40 10 chr15 77158339 77158438 -24222083 + L2 LINE L2 3169 3270 -2 191 385 7 7 chr15 77158600 77158743 -24221778 - MIR SINE MIR -113 149 7 241 255 49 10 chr15 77160180 77160208 -24220313 - HAL1b LINE L1 0 1348 1321 395 224 90 37 chr15 77160208 77160342 -24220179 - L1ME4a LINE L1 -46 6075 1243 565 227 55 8 chr15 77160423 77160551 -24219970 + MIR SINE MIR 4 137 -125 298 255 53 0 chr15 77160551 77160645 -24219876 - L1P4 LINE L1 -689 5472 5374 459 340 157 14 chr15 77160814 77161367 -24219154 + L2 LINE L2 1757 2388 -926 271 208 0 0 chr15 77161661 77161709 -24218812 - MIR3 SINE MIR -12 196 149 310 288 41 77 chr15 77162058 77162228 -24218293 - L1MC5 LINE L1 -33 7928 7765 374 143 0 0 chr15 77162234 77162290 -24218231 - Charlie1 DNA MER1_type -9 2752 2697 1968 129 0 25 chr15 77162406 77162723 -24217798 - AluJb SINE Alu -3 309 1 1706 44 0 18 chr15 77163007 77163234 -24217287 + AluY SINE Alu 1 223 -88 697 251 6 6 chr15 77163334 77163509 -24217012 - L1P LINE L1 -2510 3636 3462 1429 155 7 30 chr15 77163517 77163730 -24216791 + L1P LINE L1 4826 5033 -1113 2404 105 17 17 chr15 77163730 77164091 -24216430 - THE1B LTR MaLR -3 361 1 1429 155 7 30 chr15 77164091 77164148 -24216373 + L1P LINE L1 5033 5090 -1056 226 324 101 36 chr15 77164448 77164695 -24215826 + L2 LINE L2 2715 2977 -337 405 286 8 8 chr15 77165913 77166032 -24214489 + (TGG)n Simple_repeat Simple_repeat 2 120 0 1307 134 48 0 chr15 77166735 77166944 -24213577 - MER20 DNA MER1_type 0 219 1 187 271 21 21 chr15 77167053 77167101 -24213420 - L2 LINE L2 -15 3298 3251 383 303 0 0 chr15 77167167 77167266 -24213255 - L2 LINE L2 0 3313 3215 265 366 15 15 chr15 77167295 77167426 -24213095 + MIR SINE MIR 15 145 -117 237 169 62 29 chr15 77168540 77168847 -24211674 + (CCCA)n Simple_repeat Simple_repeat 1 317 0 370 174 0 97 chr15 77168870 77169065 -24211456 + C-rich Low_complexity Low_complexity 3 178 0 350 164 61 36 chr15 77169004 77169169 -24211352 + (CCCA)n Simple_repeat Simple_repeat 1 169 0 * 321 189 33 39 chr15 77169232 77169412 -24211109 + (CA)n Simple_repeat Simple_repeat 1 179 0 * 343 263 35 12 chr15 77169315 77169486 -24211035 + (CCCA)n Simple_repeat Simple_repeat 3 177 0 2739 99 3 3 chr15 77170114 77170478 -24210043 + THE1B LTR MaLR 1 364 0 1098 279 55 36 chr15 77170505 77170889 -24209632 - MER21B LTR ERV1 -427 436 46 262 288 42 68 chr15 77171502 77171620 -24208901 + L2 LINE L2 3192 3306 -7 357 207 190 0 chr15 77171640 77171761 -24208760 + L1ME4a LINE L1 5967 6110 -11 2477 143 8 3 chr15 77172258 77172650 -24207871 - L1MC1 LINE L1 -96 6237 5844 697 164 66 0 chr15 77172651 77172773 -24207748 - FRAM SINE Alu -7 169 40 1778 209 60 14 chr15 77172776 77173145 -24207376 - MLT2B1 LTR ERVL -103 417 32 2194 95 7 3 chr15 77174162 77174468 -24206053 - AluSq SINE Alu -6 307 1 475 282 49 7 chr15 77174480 77174622 -24205899 - MIR SINE MIR -56 206 59 225 0 0 0 chr15 77174784 77174809 -24205712 + (T)n Simple_repeat Simple_repeat 1 25 0 2259 110 0 0 chr15 77175203 77175513 -24205008 - AluSq SINE Alu -2 311 2 472 223 9 0 chr15 77175514 77175626 -24204895 - MLT2B2 LTR ERVL -401 114 2 426 202 124 0 chr15 77175628 77175717 -24204804 + MER81 DNA DNA 10 109 -5 180 273 23 0 chr15 77175932 77175976 -24204545 - L2 LINE L2 -568 2746 2702 1105 196 67 5 chr15 77176477 77176692 -24203829 - LTR39 LTR ERV1 0 783 555 1930 135 38 18 chr15 77176692 77177130 -24203391 - MER61D LTR ERV1 0 501 3 3771 173 40 11 chr15 77177130 77177872 -24202649 + LTR1B LTR ERV1 1 783 -2 1754 163 0 24 chr15 77177880 77178104 -24202417 - LTR39 LTR ERV1 -226 557 340 2339 137 75 16 chr15 77178104 77178543 -24201978 - MER4C LTR ERV1 0 465 1 1754 163 0 24 chr15 77178543 77178607 -24201914 - LTR39 LTR ERV1 -443 340 276 358 252 17 17 chr15 77178755 77178870 -24201651 + LTR67 LTR ERVL 443 557 0 536 296 13 31 chr15 77179037 77179237 -24201284 + MIR3 SINE MIR 4 200 -8 2337 84 0 0 chr15 77179553 77179851 -24200670 + AluSx SINE Alu 1 298 -14 439 333 77 17 chr15 77180123 77180357 -24200164 - MIR SINE MIR -12 250 3 237 311 71 56 chr15 77180360 77180556 -24199965 + MIR SINE MIR 40 238 -24 269 285 16 65 chr15 77180658 77180781 -24199740 + L2 LINE L2 2943 3059 -213 926 279 5 9 chr15 77181449 77181668 -24198853 - Charlie1a DNA MER1_type -1237 218 1 905 256 72 48 chr15 77181668 77182095 -24198426 - L1MC5 LINE L1 -186 7775 7333 1061 171 37 28 chr15 77182095 77182311 -24198210 - MER20 DNA MER1_type -1 218 1 905 256 72 48 chr15 77182311 77182386 -24198135 - L1MC5 LINE L1 -628 7333 7261 862 206 39 39 chr15 77182508 77182741 -24197780 - L1MC5 LINE L1 -733 7228 6996 330 168 0 7 chr15 77182764 77182830 -24197691 - L1MC4 LINE L1 0 8042 7921 418 219 0 0 chr15 77182832 77182914 -24197607 - L1MC4 LINE L1 -149 7893 7812 246 258 118 54 chr15 77183174 77183395 -24197126 - L1MC4a LINE L1 -1586 6222 5988 298 214 0 97 chr15 77183413 77183516 -24197005 - L1MC4a LINE L1 -1906 5902 5810 2185 215 42 35 chr15 77183517 77183998 -24196523 - L1MB7 LINE L1 -9 6175 5688 1825 170 14 10 chr15 77183998 77184292 -24196229 - AluJo SINE Alu -17 295 1 2185 215 42 35 chr15 77184292 77184359 -24196162 - L1MB7 LINE L1 -496 5688 5623 943 272 45 22 chr15 77184414 77184726 -24195795 - L1MC4a LINE L1 -2081 5727 5409 232 323 66 36 chr15 77184813 77184980 -24195541 - L2 LINE L2 -48 3265 3094 201 287 126 92 chr15 77185146 77185320 -24195201 - L2 LINE L2 -49 3223 3044 2152 154 121 35 chr15 77185543 77185972 -24194549 + MLT1D LTR MaLR 14 485 -20 2338 111 138 5 chr15 77185972 77186350 -24194171 - MSTA LTR MaLR 0 428 1 2152 154 121 35 chr15 77186350 77186373 -24194148 + MLT1D LTR MaLR 485 505 0 449 264 64 14 chr15 77186374 77186514 -24194007 + MIR SINE MIR 116 262 0 353 310 27 30 chr15 77186683 77186880 -24193641 - L1MB7 LINE L1 -727 5429 5256 273 313 49 14 chr15 77187361 77187505 -24193016 - L1MB7 LINE L1 -1513 4633 4485 2250 245 101 44 chr15 77187534 77187987 -24192534 + MER21B LTR ERV1 1 514 -349 2851 110 0 3 chr15 77187987 77188352 -24192169 - THE1B LTR MaLR 0 364 1 2250 245 101 44 chr15 77188352 77188642 -24191879 + MER21B LTR ERV1 514 786 -77 3407 136 23 76 chr15 77188728 77189374 -24191147 + LTR9 LTR ERV1 1 612 0 328 294 52 65 chr15 77190445 77190598 -24189923 + MER5A DNA MER1_type 38 188 -1 1036 165 74 0 chr15 77190609 77190785 -24189736 + MER5A DNA MER1_type 1 189 0 223 233 47 0 chr15 77190903 77190946 -24189575 - MER5B DNA MER1_type -74 104 60 1746 165 20 74 chr15 77190984 77191377 -24189144 - L1MC1 LINE L1 -1 6332 5961 962 195 65 51 chr15 77191431 77191646 -24188875 + MER20 DNA MER1_type 1 218 -1 246 238 38 0 chr15 77191919 77191999 -24188522 + (CA)n Simple_repeat Simple_repeat 1 83 0 541 330 28 9 chr15 77192506 77192721 -24187800 + MIR SINE MIR 20 238 -24 235 356 0 0 chr15 77192823 77192910 -24187611 - L1ME LINE L1 -467 5654 5568 1133 181 63 5 chr15 77193284 77193489 -24187032 - MER58A DNA MER1_type -6 218 2 362 165 38 135 chr15 77193922 77194055 -24186466 + L1ME4a LINE L1 5712 5831 -290 369 249 144 50 chr15 77194059 77194400 -24186121 + L1MC4a LINE L1 4673 5045 -1101 758 246 61 58 chr15 77194603 77194945 -24185576 + L1MC4a LINE L1 5572 5914 -1894 866 290 68 14 chr15 77195197 77195810 -24184711 + L2 LINE L2 2288 3313 0 346 277 46 15 chr15 77196489 77196619 -24183902 + L1ME4a LINE L1 5977 6110 -11 26 0 0 0 chr15 77197000 77197026 -24183495 + AT_rich Low_complexity Low_complexity 1 26 0 326 299 19 19 chr15 77197094 77197201 -24183320 + MER81 DNA DNA 4 110 -4 583 237 46 20 chr15 77198399 77198551 -24181970 + MER5B DNA MER1_type 23 178 0 277 280 320 0 chr15 77198570 77198670 -24181851 - MER5A DNA MER1_type -9 180 49 1280 215 10 31 chr15 77198811 77199123 -24181398 + AluJb SINE Alu 1 306 0 1883 213 168 71 chr15 77199186 77199955 -24180566 - MER63C DNA MER1_type -130 930 70 500 30 15 0 chr15 77199955 77200021 -24180500 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 1883 213 168 71 chr15 77200021 77200098 -24180423 - MER63C DNA MER1_type -990 70 2 244 310 72 19 chr15 77201700 77201916 -24178605 + L1P LINE L1 4095 4328 -1818 229 328 86 33 chr15 77202104 77202348 -24178173 + L1MC4a LINE L1 4579 4835 -1311 510 297 76 67 chr15 77202745 77203039 -24177482 + L1MC4a LINE L1 5317 5620 -2188 2281 99 10 0 chr15 77203039 77203331 -24177190 + AluSx SINE Alu 1 295 -17 510 297 76 67 chr15 77203331 77203588 -24176933 + L1MC4a LINE L1 5620 5873 -1935 259 295 41 8 chr15 77203637 77203759 -24176762 + HAL1b LINE L1 1202 1327 -21 24839 27 5 0 chr15 77204014 77207573 -24172948 + L1PA2 LINE L1 2593 6155 0 241 246 209 0 chr15 77207778 77207888 -24172633 + L1ME LINE L1 5533 5665 -456 659 24 24 0 chr15 77207890 77207974 -24172547 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 228 245 0 0 chr15 77207980 77208029 -24172492 + GA-rich Low_complexity Low_complexity 2 50 0 540 264 127 35 chr15 77208223 77208594 -24171927 + L1ME4a LINE L1 5421 5825 -296 1923 130 0 11 chr15 77208600 77208914 -24171607 + AluSx SINE Alu 1 311 0 692 144 16 0 chr15 77209328 77209453 -24171068 + CT-rich Low_complexity Low_complexity 3 129 0 297 319 68 42 chr15 77209475 77209666 -24170855 + MLT1L LTR MaLR 209 404 -211 796 121 31 23 chr15 77209730 77209884 -24170637 + L1MB1 LINE L1 6032 6168 0 954 190 5 11 chr15 77210498 77210682 -24169839 + MER90 LTR ERV1 432 614 0 212 274 47 85 chr15 77210943 77211049 -24169472 + L2 LINE L2 3162 3263 -9 763 328 0 55 chr15 77211124 77211395 -24169126 - MIR SINE MIR -5 257 2 2498 145 14 0 chr15 77211427 77211786 -24168735 + THE1B LTR MaLR 1 364 0 411 316 44 56 chr15 77212000 77212550 -24167971 + L1M4 LINE L1 3283 3825 -2321 374 271 52 44 chr15 77213058 77213287 -24167234 + L1M4 LINE L1 3212 3442 -2704 854 125 31 0 chr15 77213476 77213604 -24166917 - FLAM_C SINE Alu 0 143 12 225 0 0 0 chr15 77214383 77214408 -24166113 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 587 238 173 11 chr15 77215551 77215736 -24164785 - MIR SINE MIR -8 254 40 255 336 8 25 chr15 77215777 77215899 -24164622 + MIR SINE MIR 20 139 -123 404 278 0 31 chr15 77216252 77216349 -24164172 - MIR SINE MIR -98 110 17 253 299 0 0 chr15 77217095 77217162 -24163359 - Charlie8 DNA MER1_type -7 2410 2344 208 203 17 51 chr15 77217680 77217739 -24162782 + G-rich Low_complexity Low_complexity 3 59 0 241 320 101 36 chr15 77218225 77218472 -24162049 + L2 LINE L2 2715 2977 -337 1151 272 0 0 chr15 77218647 77218897 -24161624 + MIR SINE MIR 12 261 -1 196 230 162 40 chr15 77218956 77219030 -24161491 + L2 LINE L2 3188 3270 -2 326 220 26 13 chr15 77219537 77219637 -24160884 + MIR SINE MIR 69 143 -65 2446 84 3 0 chr15 77220287 77220595 -24159926 - AluSq SINE Alu -2 311 3 252 246 0 16 chr15 77221005 77221066 -24159455 + CT-rich Low_complexity Low_complexity 3 62 0 227 204 19 19 chr15 77221140 77221194 -24159327 + CT-rich Low_complexity Low_complexity 5 58 0 195 220 0 0 chr15 77221361 77221411 -24159110 + (TG)n Simple_repeat Simple_repeat 1 50 0 354 196 168 56 chr15 77221441 77221494 -24159027 - L1ME LINE L1 -351 5811 5765 1662 172 13 19 chr15 77221494 77221802 -24158719 - AluJo SINE Alu -6 306 1 354 196 168 56 chr15 77221802 77221891 -24158630 - L1ME LINE L1 -397 5765 5653 319 239 128 98 chr15 77221903 77222208 -24158313 - MLT1H LTR MaLR -104 445 132 640 204 121 24 chr15 77222336 77222542 -24157979 - L1ME LINE L1 -611 5553 5328 396 0 0 0 chr15 77223037 77223081 -24157440 + (CA)n Simple_repeat Simple_repeat 1 44 0 279 0 0 0 chr15 77223080 77223111 -24157410 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 380 157 48 24 chr15 77224149 77224232 -24156289 - L1ME4a LINE L1 -70 6051 5967 255 217 36 72 chr15 77224252 77224335 -24156186 - L2 LINE L2 -7 3306 3227 384 214 40 165 chr15 77224400 77224648 -24155873 - MIR SINE MIR 0 262 46 775 283 42 12 chr15 77227634 77227874 -24152647 + MIR SINE MIR 1 247 -15 910 122 24 29 chr15 77228159 77228316 -24152205 - MER20 DNA MER1_type -49 170 10 1314 116 21 0 chr15 77230873 77231062 -24149459 + Tigger3(Golem) DNA MER2_type 2846 3038 0 3736 227 112 18 chr15 77231062 77232265 -24148256 - Charlie2a DNA MER1_type -574 2288 972 2595 10 3 0 chr15 77232389 77232681 -24147840 + AluYa5 SINE Alu 1 293 -18 390 308 96 5 chr15 77232802 77233000 -24147521 - HAL1b LINE L1 -699 649 434 715 212 12 6 chr15 77233186 77233351 -24147170 - HAL1b LINE L1 -837 511 346 5815 73 2 9 chr15 77233351 77234169 -24146352 + L1PA13 LINE L1 5346 6158 -5 290 253 13 96 chr15 77234225 77234454 -24146067 - HAL1b LINE L1 -1048 300 91 486 246 8 22 chr15 77234818 77234952 -24145569 - MIR SINE MIR -10 252 121 22 35 0 0 chr15 77235614 77235643 -24144878 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr15 77236225 77236251 -24144270 + AT_rich Low_complexity Low_complexity 1 26 0 377 288 56 0 chr15 77236871 77236996 -24143525 + MIR SINE MIR 18 149 -113 951 198 77 21 chr15 77237007 77237334 -24143187 - MSTD LTR MaLR 0 396 1 304 351 160 37 chr15 77237389 77237739 -24142782 + L2 LINE L2 2245 2637 -677 758 232 91 134 chr15 77237740 77238314 -24142207 + MLT1H1 LTR MaLR 1 555 0 183 390 32 16 chr15 77238708 77238831 -24141690 - MER5A DNA MER1_type -6 183 59 * 188 376 37 9 chr15 77238733 77238842 -24141679 + MER5A DNA MER1_type 43 154 -35 326 302 66 0 chr15 77239172 77239278 -24141243 + L2 LINE L2 3157 3269 -3 1038 285 134 11 chr15 77240566 77240931 -24139590 - L2 LINE L2 -3 3310 2901 267 156 62 62 chr15 77240940 77241100 -24139421 + (TATAA)n Simple_repeat Simple_repeat 4 163 0 618 267 114 106 chr15 77241277 77241334 -24139187 - L2 LINE L2 0 3272 3217 586 255 107 15 chr15 77241334 77241530 -24138991 - MER58C DNA MER1_type -1 214 1 618 267 114 106 chr15 77241530 77241850 -24138671 - L2 LINE L2 -55 3217 2892 304 167 191 0 chr15 77242023 77242107 -24138414 - Charlie8 DNA MER1_type -2182 235 136 845 156 44 0 chr15 77242170 77242305 -24138216 + FRAM SINE Alu 12 152 -24 261 171 0 49 chr15 77242508 77242590 -24137931 + GA-rich Low_complexity Low_complexity 2 79 0 1165 240 80 58 chr15 77242729 77243191 -24137330 - L2 LINE L2 0 3313 2842 1235 246 123 3 chr15 77243408 77243989 -24136532 + Charlie2 DNA MER1_type 1 667 -2184 4030 133 12 52 chr15 77245867 77245981 -24134540 - Tigger3b DNA MER2_type -2282 746 629 2215 96 10 7 chr15 77245981 77246282 -24134239 - AluSx SINE Alu -10 302 1 4030 133 12 52 chr15 77246282 77246735 -24133786 - Tigger3b DNA MER2_type -2399 629 216 2147 125 0 7 chr15 77246735 77247031 -24133490 - AluSx SINE Alu -18 294 1 4030 133 12 52 chr15 77247031 77247238 -24133283 - Tigger3b DNA MER2_type -2812 216 2 1161 203 37 84 chr15 77247241 77247836 -24132685 + Charlie2 DNA MER1_type 2295 2861 -1 217 236 65 122 chr15 77247844 77248028 -24132493 - MIR3 SINE MIR -14 194 16 448 221 0 0 chr15 77249009 77249122 -24131399 + L1M4 LINE L1 5188 5300 -846 * 685 242 10 5 chr15 77249119 77249317 -24131204 + L1MD3 LINE L1 7797 7995 0 382 186 34 51 chr15 77249315 77249433 -24131088 + L1M LINE L1 5285 5400 -766 * 758 223 23 51 chr15 77249427 77249683 -24130838 + L1M4 LINE L1 5 253 -6289 3849 242 52 33 chr15 77249704 77251223 -24129298 + L1M4 LINE L1 3353 4900 -1744 2858 213 63 36 chr15 77251249 77252132 -24128389 + L1M4 LINE L1 3997 4903 -1243 15660 67 3 7 chr15 77252140 77252496 -24128025 - HERVL-A1 LTR ERVL -3578 2076 1720 2439 78 0 3 chr15 77252496 77252803 -24127718 - AluY SINE Alu -5 306 1 15660 67 3 7 chr15 77252803 77254529 -24125992 - HERVL-A1 LTR ERVL -3934 1720 1 2793 80 61 14 chr15 77254529 77254953 -24125568 - MLT2A1 LTR ERVL 0 444 1 527 329 106 44 chr15 77254973 77255380 -24125141 - L1MEd LINE L1 -5262 857 426 250 386 31 0 chr15 77255407 77255534 -24124987 - L3 LINE CR1 -466 1111 981 213 357 153 13 chr15 77255613 77255770 -24124751 - MIR3 SINE MIR -9 199 21 444 150 0 0 chr15 77255836 77255916 -24124605 + (CA)n Simple_repeat Simple_repeat 2 81 0 521 136 8 32 chr15 77256340 77256465 -24124056 + CT-rich Low_complexity Low_complexity 3 124 0 309 270 62 73 chr15 77256578 77256756 -24123765 - L1ME4a LINE L1 -105 6016 5841 717 296 28 16 chr15 77256794 77257041 -24123480 - MIR SINE MIR -1 261 12 307 281 16 23 chr15 77257041 77257169 -24123352 - L1ME4a LINE L1 -310 5811 5685 342 312 17 8 chr15 77257173 77257407 -24123114 - L1ME4a LINE L1 -1002 5144 4909 433 305 53 0 chr15 77257670 77257801 -24122720 + MIR SINE MIR 48 185 -77 1340 309 132 41 chr15 77258308 77259529 -24120992 + L2 LINE L2 1520 2924 -348 228 111 0 0 chr15 77259529 77259565 -24120956 + (CA)n Simple_repeat Simple_repeat 2 37 0 1340 309 132 41 chr15 77259565 77259949 -24120572 + L2 LINE L2 2924 3272 0 1013 80 0 12 chr15 77260040 77260203 -24120318 + (TAGA)n Simple_repeat Simple_repeat 3 163 0 2039 92 115 9 chr15 77260203 77260550 -24119971 - MLT2A1 LTR ERVL -60 384 1 23 33 0 0 chr15 77260637 77260667 -24119854 + AT_rich Low_complexity Low_complexity 1 30 0 274 250 150 50 chr15 77261331 77261451 -24119070 + MIR SINE MIR 86 217 -45 569 252 9 0 chr15 77261823 77261934 -24118587 - MER81 DNA DNA 0 114 3 4441 133 17 18 chr15 77262001 77262782 -24117739 + L1MA8 LINE L1 5500 6279 -12 22 35 0 0 chr15 77262783 77262812 -24117709 + AT_rich Low_complexity Low_complexity 1 29 0 667 193 187 0 chr15 77262892 77263042 -24117479 - MER5B DNA MER1_type 0 178 1 465 264 81 40 chr15 77264677 77264851 -24115670 - L2 LINE L2 0 3313 3133 504 236 82 101 chr15 77266030 77266348 -24114173 + MLT1H LTR MaLR 116 427 -122 332 340 109 0 chr15 77266434 77266573 -24113948 - MIR SINE MIR -62 146 45 27 49 0 0 chr15 77266723 77266764 -24113757 + AT_rich Low_complexity Low_complexity 1 41 0 7240 141 21 55 chr15 77266764 77269337 -24111184 - L1MA4 LINE L1 0 6300 3802 7542 29 5 0 chr15 77269437 77270548 -24109973 + L1PA4 LINE L1 5041 6155 0 248 254 0 0 chr15 77270710 77270769 -24109752 + Charlie8 DNA MER1_type 3 61 -2356 459 0 0 0 chr15 77271489 77271540 -24108981 + (TG)n Simple_repeat Simple_repeat 1 51 0 1126 201 186 20 chr15 77271690 77272082 -24108439 - Charlie4a DNA MER1_type 0 508 52 9740 20 1 0 chr15 77272108 77273292 -24107229 - L1PA3 LINE L1 -1160 4986 3802 7694 21 1 0 chr15 77273292 77274464 -24106057 + L1PA3 LINE L1 4983 6155 0 872 283 135 40 chr15 77275217 77276298 -24104223 - L1MA4 LINE L1 -2642 3504 2285 322 230 46 124 chr15 77276324 77276541 -24103980 - L1MDa LINE L1 -3903 2637 2438 486 338 43 46 chr15 77277039 77277320 -24103201 - HAL1 LINE L1 -1009 1498 1219 412 237 59 31 chr15 77277345 77277522 -24102999 + MLT1H1 LTR MaLR 1 187 -393 21 0 0 0 chr15 77277649 77277670 -24102851 + AT_rich Low_complexity Low_complexity 1 21 0 204 125 0 0 chr15 77277868 77277900 -24102621 + (TTC)n Simple_repeat Simple_repeat 3 34 0 831 184 199 97 chr15 77278286 77278617 -24101904 - MSTD LTR MaLR 0 396 1 2847 105 13 59 chr15 77278763 77279240 -24101281 - L1PA15 LINE L1 -8 6157 5703 237 200 40 0 chr15 77279605 77279655 -24100866 + MER5B DNA MER1_type 125 176 -2 1086 264 19 6 chr15 77279736 77280050 -24100471 + MER58B DNA MER1_type 2 319 -22 307 216 14 14 chr15 77280444 77280518 -24100003 - HERVL40 LTR ERVL -2104 3426 3353 232 189 0 19 chr15 77281069 77281122 -24099399 + GA-rich Low_complexity Low_complexity 2 53 0 492 264 181 0 chr15 77282124 77282268 -24098253 - MER5A DNA MER1_type -6 183 14 408 322 190 19 chr15 77283217 77283338 -24097183 + MIR SINE MIR 13 112 -150 3701 87 0 4 chr15 77283338 77283799 -24096722 - LTR46 LTR ERV1 -1 459 1 408 322 190 19 chr15 77283799 77283888 -24096633 + MIR SINE MIR 112 259 -3 674 289 45 8 chr15 77283963 77284209 -24096312 - MLT1L LTR MaLR -4 611 357 212 324 135 9 chr15 77284410 77284521 -24096000 - MER5A DNA MER1_type -30 159 35 * 250 323 21 21 chr15 77284441 77284537 -24095984 + MER5A DNA MER1_type 86 181 -8 218 252 146 10 chr15 77286295 77286398 -24094123 + MIR SINE MIR 20 136 -72 2219 129 3 0 chr15 77287061 77287372 -24093149 - AluSx SINE Alu 0 312 1 262 242 0 33 chr15 77287414 77287505 -24093016 + MIR SINE MIR 146 233 -29 251 270 140 30 chr15 77287634 77287734 -24092787 + L2 LINE L2 2272 2382 -932 645 245 150 21 chr15 77287785 77288018 -24092503 + Charlie8 DNA MER1_type 7 269 -2148 250 306 37 37 chr15 77288413 77288547 -24091974 + HAL1b LINE L1 253 386 -962 1936 169 46 25 chr15 77288654 77289020 -24091501 - MLT1A2 LTR MaLR 0 374 1 530 238 48 0 chr15 77289143 77289290 -24091231 + MER103 DNA DNA 4 157 -9 272 333 47 25 chr15 77289702 77290062 -24090459 + L1M4 LINE L1 4340 4707 -1439 1947 222 82 16 chr15 77290105 77290591 -24089930 - LTR40a LTR ERVL -1 518 1 1430 220 10 0 chr15 77290593 77290930 -24089591 - HERVL40 LTR ERVL -2 5528 2791 411 359 8 12 chr15 77290792 77291043 -24089478 - MER89-int LTR ERV1 -281 6520 6271 * 7109 232 65 22 chr15 77291047 77292602 -24087919 - HERVL40 LTR ERVL -1205 4325 2838 724 156 37 7 chr15 77292602 77292737 -24087784 + L1MD1 LINE L1 6104 6242 0 2142 111 27 60 chr15 77292737 77293102 -24087419 + L1MA4 LINE L1 5937 6294 -6 7109 232 65 22 chr15 77293102 77293275 -24087246 - HERVL40 LTR ERVL -2691 2839 2522 773 278 83 28 chr15 77293274 77293924 -24086597 - HERVL40 LTR ERVL -3919 1611 918 * 324 186 0 0 chr15 77294153 77294212 -24086309 - HERVL40 LTR ERVL -5455 75 17 1568 250 21 61 chr15 77294216 77294692 -24085829 - LTR40a LTR ERVL 0 519 63 358 153 0 35 chr15 77294876 77294961 -24085560 + CT-rich Low_complexity Low_complexity 4 85 0 21 57 0 0 chr15 77295540 77295575 -24084946 + AT_rich Low_complexity Low_complexity 1 35 0 307 322 95 42 chr15 77296199 77296482 -24084039 + L2 LINE L2 2548 2845 -469 411 346 5 5 chr15 77297743 77297931 -24082590 - MER117 DNA MER1_type 0 197 10 346 332 26 37 chr15 77297977 77298167 -24082354 - L2 LINE L2 -27 3286 3099 343 297 35 28 chr15 77298166 77298311 -24082210 + MIR SINE MIR 117 262 0 * 201 316 147 22 chr15 77298436 77298572 -24081949 + L2 LINE L2 3115 3267 -5 18599 196 13 12 chr15 77298833 77302179 -24078342 + L1P LINE L1 1529 4883 -1263 2815 10 0 0 chr15 77302179 77302483 -24078038 + AluYa5 SINE Alu 1 304 -7 18599 196 13 12 chr15 77302483 77302961 -24077560 + L1P LINE L1 4883 5359 -787 5165 124 40 10 chr15 77303478 77304297 -24076224 + L1PA15 LINE L1 5317 6160 -5 269 271 0 14 chr15 77304417 77304487 -24076034 + MLT1L LTR MaLR 205 273 -342 1258 216 49 0 chr15 77304931 77305237 -24075284 - MER33 DNA MER1_type 0 324 4 755 292 169 18 chr15 77305593 77306173 -24074348 + L2 LINE L2 2347 3018 -254 338 264 147 45 chr15 77306323 77306615 -24073906 - L2 LINE L2 -1004 2310 1989 216 336 26 0 chr15 77306797 77306910 -24073611 + L2 LINE L2 2042 2157 -1157 625 248 24 63 chr15 77307933 77308139 -24072382 + MLT1L LTR MaLR 1 198 -417 427 265 68 12 chr15 77308367 77308546 -24071975 + MLT1L LTR MaLR 374 605 -10 373 310 52 30 chr15 77308786 77309018 -24071503 - L1M4 LINE L1 -1499 4647 4411 553 308 103 8 chr15 77309094 77309474 -24071047 + L1M4 LINE L1 4585 5000 -1146 403 276 41 94 chr15 77309483 77309729 -24070792 - L1M4 LINE L1 -2395 3751 3520 315 0 0 0 chr15 77309736 77309771 -24070750 + (TG)n Simple_repeat Simple_repeat 1 35 0 605 228 13 47 chr15 77309811 77309960 -24070561 - MIR SINE MIR -100 162 19 248 285 0 61 chr15 77309980 77310019 -24070502 - L1M4 LINE L1 -2647 3499 3459 1005 265 81 39 chr15 77310019 77310453 -24070068 - LTR16A1 LTR ERVL -4 453 2 248 285 0 61 chr15 77310453 77310578 -24069943 - L1M4 LINE L1 -2687 3459 3345 * 3377 235 55 27 chr15 77310571 77312084 -24068437 - L1ME1 LINE L1 0 6334 4823 1183 187 17 4 chr15 77312090 77312331 -24068190 + L1ME2 LINE L1 4616 4859 -1287 916 239 51 62 chr15 77312318 77312690 -24067831 + L1ME2 LINE L1 5791 6158 -6 * 326 191 43 109 chr15 77313926 77314105 -24066416 + MIR SINE MIR 39 195 -61 580 251 12 31 chr15 77315369 77315532 -24064989 + L1ME2 LINE L1 5995 6154 -10 416 245 39 58 chr15 77315574 77315782 -24064739 + L1MC4 LINE L1 7837 8040 -2 1423 230 81 70 chr15 77316003 77316567 -24063954 - L1ME1 LINE L1 -8 6158 5597 1664 126 4 16 chr15 77319561 77319815 -24060706 + AluSg1 SINE Alu 58 308 -1 1805 164 7 16 chr15 77319937 77320247 -24060274 + AluSx SINE Alu 1 307 -5 320 329 107 47 chr15 77320788 77320859 -24059662 + L2 LINE L2 1639 1704 -1610 2018 151 3 13 chr15 77320859 77321170 -24059351 + AluJo SINE Alu 1 308 -4 320 329 107 47 chr15 77321170 77321605 -24058916 + L2 LINE L2 1704 2175 -1139 340 360 12 18 chr15 77321640 77321804 -24058717 - LTR16C LTR ERVL -30 461 299 1977 336 88 28 chr15 77322227 77323534 -24056987 - ERVL LTR ERVL -387 5377 3992 371 319 91 69 chr15 77323739 77324402 -24056119 + ERVL LTR ERVL 1218 1940 -3824 * 2020 305 65 45 chr15 77324394 77324697 -24055824 + ERVL LTR ERVL 2050 2345 -3419 978 216 5 11 chr15 77324697 77324887 -24055634 + MER5A DNA MER1_type 1 189 0 2020 305 65 45 chr15 77324887 77325759 -24054762 + ERVL LTR ERVL 2345 3249 -2515 622 250 64 37 chr15 77325934 77326122 -24054399 - MLT1J2 LTR MaLR -18 432 240 465 254 51 0 chr15 77326173 77326291 -24054230 - MLT1J2 LTR MaLR -303 147 24 338 274 84 11 chr15 77326788 77326883 -24053638 - Charlie8 DNA MER1_type -2315 102 1 1174 201 112 0 chr15 77327492 77327751 -24052770 - L1MB4 LINE L1 -6 6174 5887 1012 245 102 13 chr15 77327856 77328170 -24052351 - LTR16C LTR ERVL -3 488 147 1037 240 5 5 chr15 77328668 77328876 -24051645 - MER58A DNA MER1_type 0 224 17 565 293 63 5 chr15 77329143 77329334 -24051187 - MIR SINE MIR -41 221 20 268 248 93 62 chr15 77330665 77330794 -24049727 + LTR67 LTR ERVL 425 557 0 328 275 9 28 chr15 77331369 77331478 -24049043 + LTR67 LTR ERVL 444 550 -7 203 293 52 0 chr15 77331645 77331703 -24048818 - L2 LINE L2 0 3272 3212 205 336 39 31 chr15 77331875 77332003 -24048518 - L2 LINE L2 -470 2844 2716 269 206 73 29 chr15 77332124 77332192 -24048329 + MIR SINE MIR 175 245 -17 635 290 59 35 chr15 77332273 77332528 -24047993 + MIR SINE MIR 2 262 0 2005 192 68 50 chr15 77333539 77333998 -24046523 + MLT1C LTR MaLR 1 467 0 300 321 202 27 chr15 77334053 77334499 -24046022 + L2 LINE L2 1550 2073 -1241 417 247 63 70 chr15 77335167 77335325 -24045196 + MER103 DNA DNA 3 159 -7 2899 7 0 0 chr15 77335555 77335864 -24044657 - AluY SINE Alu -2 309 1 715 208 0 0 chr15 77336543 77336663 -24043858 - FAM SINE Alu -15 170 51 227 267 171 38 chr15 77336677 77336782 -24043739 + L2 LINE L2 3143 3261 -11 242 320 8 57 chr15 77337253 77337375 -24043146 - L2 LINE L2 -4 3268 3153 225 308 92 25 chr15 77338430 77338550 -24041971 + L2 LINE L2 3139 3266 -6 419 278 107 18 chr15 77340576 77340745 -24039776 - MIR SINE MIR -73 189 6 224 365 12 24 chr15 77340946 77341031 -24039490 - L2 LINE L2 -6 3266 3183 533 325 100 4 chr15 77342496 77342727 -24037794 - MIR SINE MIR -6 256 4 444 319 55 72 chr15 77343208 77343515 -24037006 - L2 LINE L2 -3 3269 2968 393 243 0 0 chr15 77343779 77343853 -24036668 - Charlie4 DNA MER1_type 0 1961 1888 1283 140 37 55 chr15 77343864 77344136 -24036385 - L1MD3 LINE L1 0 7995 7729 436 224 65 61 chr15 77344137 77344382 -24036139 - Charlie4 DNA MER1_type -71 1890 1645 1123 193 71 19 chr15 77344587 77344856 -24035665 - Charlie4 DNA MER1_type -1668 293 11 358 266 72 14 chr15 77344936 77345075 -24035446 + Charlie8 DNA MER1_type 64 210 -2207 260 303 0 0 chr15 77345203 77345279 -24035242 + Charlie8 DNA MER1_type 2341 2416 -1 354 273 44 104 chr15 77345375 77345492 -24035029 + MIR3 SINE MIR 37 141 -67 2047 120 17 7 chr15 77345492 77345805 -24034716 + AluSx SINE Alu 1 312 0 354 273 44 104 chr15 77345805 77345870 -24034651 + MIR3 SINE MIR 141 208 0 185 286 71 48 chr15 77345852 77345978 -24034543 + L2 LINE L2 3183 3311 -2 * 556 228 16 8 chr15 77345991 77346118 -24034403 + Charlie4 DNA MER1_type 11 138 -1823 248 241 36 24 chr15 77346500 77346583 -24033938 + LTR67 LTR ERVL 472 555 -2 797 289 111 18 chr15 77347920 77348435 -24032086 + L1ME3 LINE L1 1093 1655 -4875 1134 244 37 20 chr15 77348939 77349234 -24031287 + Charlie5 DNA MER1_type 2 301 -2311 388 281 30 22 chr15 77349226 77349361 -24031160 + Charlie5 DNA MER1_type 261 396 -2216 * 5671 186 90 5 chr15 77349357 77350632 -24029889 + Charlie5 DNA MER1_type 856 2239 -373 9033 188 42 44 chr15 77350638 77353888 -24026633 + L1MB2 LINE L1 2890 6147 -24 1010 179 52 83 chr15 77353888 77353958 -24026563 + Charlie5 DNA MER1_type 2303 2374 -250 1793 177 6 22 chr15 77353958 77354275 -24026246 - AluJb SINE Alu 0 312 1 1010 179 52 83 chr15 77354275 77354529 -24025992 + Charlie5 DNA MER1_type 2374 2617 -7 953 61 0 0 chr15 77354553 77354667 -24025854 - L1MA1 LINE L1 -4 6298 6185 292 285 65 47 chr15 77355019 77355328 -24025193 + L1ME3 LINE L1 2417 2732 -3808 544 263 46 7 chr15 77355335 77355487 -24025034 - LTR67 LTR ERVL -8 549 392 386 313 130 32 chr15 77355830 77356230 -24024291 + L1ME3 LINE L1 4734 5172 -1368 1088 258 65 45 chr15 77356295 77356986 -24023535 + L1ME3 LINE L1 5281 5984 -574 2333 238 62 44 chr15 77356987 77357698 -24022823 + L1MEc LINE L1 45 768 -5628 394 284 35 33 chr15 77357779 77358037 -24022484 + L1ME3 LINE L1 6103 6352 -206 2175 172 31 10 chr15 77358105 77358488 -24022033 + MSTC LTR MaLR 37 427 -1 367 211 391 6 chr15 77358495 77358656 -24021865 - MIR SINE MIR -29 233 11 182 216 0 0 chr15 77359726 77359763 -24020758 - L2 LINE L2 -5 3308 3272 808 284 45 5 chr15 77361659 77361881 -24018640 + MIR SINE MIR 26 256 -6 263 146 18 0 chr15 77362995 77363050 -24017471 + CT-rich Low_complexity Low_complexity 4 59 0 217 298 141 58 chr15 77363065 77363186 -24017335 - L2 LINE L2 -21 3251 3121 366 277 127 24 chr15 77364805 77364971 -24015550 + MIR SINE MIR 46 228 -34 240 261 14 14 chr15 77365296 77365365 -24015156 + CT-rich Low_complexity Low_complexity 3 71 0 590 277 99 98 chr15 77365627 77365755 -24014766 - L1MC4a LINE L1 -747 5399 5273 15422 130 43 14 chr15 77365755 77366106 -24014415 - Tigger1 DNA MER2_type 0 2418 2078 1924 133 60 0 chr15 77366106 77366391 -24014130 + AluSq SINE Alu 1 302 -11 15422 130 43 14 chr15 77366391 77368390 -24012131 - Tigger1 DNA MER2_type -340 2078 1 590 277 99 98 chr15 77368390 77368845 -24011676 - L1MC4a LINE L1 -873 5273 5531 460 19 0 0 chr15 77368845 77368897 -24011624 + U2 snRNA snRNA 1 52 -136 590 277 99 98 chr15 77368897 77369244 -24011277 - L1MC4a LINE L1 -614 5532 5187 22 35 0 0 chr15 77369378 77369407 -24011114 + AT_rich Low_complexity Low_complexity 1 29 0 262 232 89 36 chr15 77369488 77369600 -24010921 - L1 LINE L1 -1306 4840 4723 23 54 0 0 chr15 77369921 77369958 -24010563 + AT_rich Low_complexity Low_complexity 1 37 0 229 277 29 22 chr15 77370009 77370146 -24010375 - L1 LINE L1 -3174 2972 2835 407 238 9 29 chr15 77370713 77370818 -24009703 + MIR SINE MIR 118 220 -42 213 39 0 0 chr15 77370862 77370888 -24009633 + (TC)n Simple_repeat Simple_repeat 1 26 0 2142 109 0 0 chr15 77370889 77371165 -24009356 - AluSq SINE Alu -37 276 1 234 0 0 0 chr15 77371170 77371196 -24009325 + (T)n Simple_repeat Simple_repeat 1 26 0 660 278 37 42 chr15 77371412 77371653 -24008868 + MIR SINE MIR 9 248 -14 227 244 0 0 chr15 77371769 77371814 -24008707 - L2 LINE L2 -11 3261 3217 276 272 7 73 chr15 77373073 77373209 -24007312 - L1ME LINE L1 -658 5463 5337 3978 68 34 0 chr15 77374008 77374504 -24006017 - LTR10D LTR ERV1 0 513 1 21 0 0 0 chr15 77374690 77374711 -24005810 + AT_rich Low_complexity Low_complexity 1 21 0 235 182 26 39 chr15 77374827 77374904 -24005617 + (CCCCG)n Simple_repeat Simple_repeat 3 78 0 387 0 0 0 chr15 77376729 77376772 -24003749 + (TTA)n Simple_repeat Simple_repeat 3 45 0 7293 28 8 14 chr15 77376775 77377642 -24002879 - L1PA5 LINE L1 -20 6134 5273 1944 53 4 0 chr15 77377631 77377875 -24002646 + L1P LINE L1 4642 4886 -1260 * 677 145 20 20 chr15 77378051 77378203 -24002318 + CT-rich Low_complexity Low_complexity 4 155 0 417 233 71 18 chr15 77378291 77378423 -24002098 - MIR SINE MIR -67 141 52 211 224 0 41 chr15 77379009 77379058 -24001463 - MIR SINE MIR -86 122 76 234 0 0 0 chr15 77382240 77382266 -23998255 + (TG)n Simple_repeat Simple_repeat 2 27 0 286 271 41 57 chr15 77384561 77384683 -23995838 + MIR3 SINE MIR 44 163 -45 2311 80 0 3 chr15 77384761 77385060 -23995461 + AluSp SINE Alu 1 298 -15 382 276 112 9 chr15 77385305 77385421 -23995100 + L2 LINE L2 3144 3271 -1 289 306 56 0 chr15 77385474 77385546 -23994975 + L2 LINE L2 3189 3264 -49 213 289 66 13 chr15 77385544 77385620 -23994901 + L3 LINE CR1 1349 1428 -149 * 1156 229 149 22 chr15 77385635 77385998 -23994523 + MLT1I LTR MaLR 1 409 0 416 230 56 6 chr15 77387060 77387221 -23993300 + (TGAG)n Simple_repeat Simple_repeat 2 170 0 254 305 48 9 chr15 77388215 77388320 -23992201 + MIR3 SINE MIR 93 201 -7 351 324 9 9 chr15 77388478 77388586 -23991935 + MIR SINE MIR 38 145 -63 329 194 90 43 chr15 77389332 77389464 -23991057 + L1MC4 LINE L1 1971 6975 -1347 245 356 35 8 chr15 77389751 77389875 -23990646 - MIR3 SINE MIR -44 164 37 3322 152 28 4 chr15 77390120 77390626 -23989895 + L1PA13 LINE L1 1 518 -6269 484 316 32 11 chr15 77391183 77391370 -23989151 + MLT1I LTR MaLR 93 283 -126 1215 277 113 22 chr15 77391376 77391975 -23988546 - L1M4 LINE L1 -1859 4287 3634 430 293 43 0 chr15 77392009 77392217 -23988304 - L1M4 LINE L1 -2690 3456 3240 1741 207 32 29 chr15 77392231 77392607 -23987914 - MLT1F LTR MaLR 0 542 166 457 316 68 11 chr15 77392941 77393131 -23987390 - MIR SINE MIR -23 239 39 1965 178 42 59 chr15 77393463 77393934 -23986587 + MLT1C LTR MaLR 1 463 -4 225 0 0 0 chr15 77394641 77394666 -23985855 + (A)n Simple_repeat Simple_repeat 1 25 0 475 282 49 7 chr15 77394828 77394970 -23985551 + MIR SINE MIR 59 206 -56 2176 101 3 0 chr15 77394982 77395278 -23985243 + AluSg SINE Alu 1 297 -13 1410 222 6 6 chr15 77395448 77395768 -23984753 - MER33 DNA MER1_type -2 322 3 931 231 68 23 chr15 77396665 77396929 -23983592 + MER115 DNA AcHobo 410 685 -8 185 305 102 0 chr15 77397457 77397516 -23983005 - L2 LINE L2 -62 3210 3146 1362 170 28 68 chr15 77398124 77398447 -23982074 + AluJo SINE Alu 1 310 -2 465 335 54 50 chr15 77399849 77400309 -23980212 - L2 LINE L2 -1943 1371 910 180 254 0 63 chr15 77401596 77401659 -23978862 - L3 LINE CR1 -136 1441 1383 412 311 20 41 chr15 77402282 77402476 -23978045 + LTR16A1 LTR ERVL 195 384 -73 350 268 0 81 chr15 77402476 77402599 -23977922 - MER81 DNA DNA 0 114 2 392 259 0 0 chr15 77402600 77402681 -23977840 + LTR16A1 LTR ERVL 377 457 0 199 313 62 0 chr15 77402880 77402960 -23977561 - L2 LINE L2 -2497 817 733 268 302 0 0 chr15 77403071 77403134 -23977387 + L2 LINE L2 3251 3313 0 359 253 40 0 chr15 77403312 77403411 -23977110 - MER110A LTR ERV1 -297 171 69 215 337 0 48 chr15 77404939 77405022 -23975499 - MIR SINE MIR -88 120 42 895 196 12 6 chr15 77405059 77405232 -23975289 + MER45A DNA AcHobo 4 177 -1 187 291 63 51 chr15 77405826 77405905 -23974616 - L2 LINE L2 0 3272 3193 230 207 17 0 chr15 77406024 77406082 -23974439 + GA-rich Low_complexity Low_complexity 2 60 0 247 298 163 0 chr15 77406091 77406191 -23974330 - L1ME LINE L1 -525 5596 5486 347 258 57 121 chr15 77406452 77406716 -23973805 + MLT1I LTR MaLR 128 374 -35 345 96 0 123 chr15 77406732 77406805 -23973716 - LTR9 LTR ERV1 -81 531 468 246 136 0 45 chr15 77406872 77406938 -23973583 + (TTCC)n Simple_repeat Simple_repeat 3 65 0 1688 162 40 0 chr15 77407556 77407883 -23972638 - L1MA8 LINE L1 0 6291 5952 474 159 0 0 chr15 77408431 77408500 -23972021 + Tigger5 DNA MER2_type 2255 2323 0 930 228 53 18 chr15 77408642 77408923 -23971598 - L1M4 LINE L1 -1964 4182 3892 22 35 0 0 chr15 77408935 77408964 -23971557 + AT_rich Low_complexity Low_complexity 1 29 0 606 324 60 39 chr15 77409103 77409387 -23971134 - L3 LINE CR1 -6 1571 1282 185 349 0 16 chr15 77409435 77409498 -23971023 + MIR SINE MIR 37 98 -110 1119 222 30 36 chr15 77409514 77409816 -23970705 + MLT1H LTR MaLR 21 320 -229 645 302 65 69 chr15 77409839 77409928 -23970593 - L3 LINE CR1 -682 895 807 1577 189 3 17 chr15 77409928 77410230 -23970291 - AluJo SINE Alu -14 298 1 645 302 65 69 chr15 77410230 77410288 -23970233 - L3 LINE CR1 -770 807 750 1799 90 101 28 chr15 77410288 77410576 -23969945 - AluSc SINE Alu 0 309 1 645 302 65 69 chr15 77410576 77410921 -23969600 - L3 LINE CR1 -827 750 404 284 274 186 18 chr15 77413104 77413217 -23967304 - L3 LINE CR1 -28 1549 1418 334 298 124 0 chr15 77413319 77413440 -23967081 + MIR3 SINE MIR 70 205 -3 337 278 20 16 chr15 77413711 77413847 -23966674 - MIR SINE MIR -24 238 63 433 252 49 19 chr15 77414030 77414181 -23966340 + MIR SINE MIR 2 156 -52 476 301 117 9 chr15 77414195 77414408 -23966113 + MIR SINE MIR 21 256 -6 774 259 120 29 chr15 77415049 77415400 -23965121 - MLT1J1 LTR MaLR 0 446 64 306 234 84 65 chr15 77415567 77415674 -23964847 + L2 LINE L2 3202 3310 -3 650 178 82 15 chr15 77415893 77416028 -23964493 - MER3 DNA MER1_type 0 209 66 298 308 19 9 chr15 77418257 77418364 -23962157 + (CATA)n Simple_repeat Simple_repeat 3 110 0 350 329 55 25 chr15 77418406 77418643 -23961878 + L2 LINE L2 2493 2736 -578 478 303 99 52 chr15 77418771 77419095 -23961426 + L2 LINE L2 2934 3272 0 7922 52 41 0 chr15 77420193 77420480 -23960041 - LTR13 LTR ERVK 0 1007 733 194 0 39 0 chr15 77420480 77420506 -23960015 + (GA)n Simple_repeat Simple_repeat 2 28 0 7922 52 41 0 chr15 77420506 77421185 -23959336 - LTR13 LTR ERVK -274 733 1 1878 226 118 21 chr15 77421413 77422003 -23958518 - MLT1E2 LTR MaLR -7 619 1 240 316 23 15 chr15 77422030 77422163 -23958358 + (TATG)n Simple_repeat Simple_repeat 3 136 0 489 287 22 104 chr15 77422183 77422392 -23958129 + MIR SINE MIR 6 195 -67 556 220 368 0 chr15 77422392 77422574 -23957947 + MIR SINE MIR 3 251 -11 343 303 98 0 chr15 77423747 77423879 -23956642 + L2 LINE L2 2931 3075 -238 1635 217 156 37 chr15 77424378 77424683 -23955838 + Charlie2 DNA MER1_type 2030 2297 -565 2369 57 0 3 chr15 77424683 77424979 -23955542 - AluY SINE Alu -16 295 1 1635 217 156 37 chr15 77424979 77425402 -23955119 + Charlie2 DNA MER1_type 2297 2845 -17 535 267 22 0 chr15 77425494 77425629 -23954892 + MIR SINE MIR 12 149 -113 580 170 44 44 chr15 77426144 77426205 -23954316 - LTR37A LTR ERV1 0 426 366 2130 215 37 62 chr15 77426205 77426773 -23953748 - MLT2B3 LTR ERVL 0 554 1 580 170 44 44 chr15 77426773 77426870 -23953651 - LTR37A LTR ERV1 -59 367 268 352 148 23 68 chr15 77426868 77426956 -23953565 - LTR37A LTR ERV1 -314 112 29 * 393 175 107 29 chr15 77426948 77427051 -23953470 - LTR37A LTR ERV1 -315 111 1 514 212 166 7 chr15 77427131 77427282 -23953239 + LTR33 LTR ERVL 297 471 -50 2031 157 13 43 chr15 77427340 77427508 -23953013 + MLT1A1 LTR MaLR 1 172 -193 2222 140 87 2 chr15 77427508 77427901 -23952620 - MSTB1 LTR MaLR -4 428 3 2031 157 13 43 chr15 77427901 77428107 -23952414 + MLT1A1 LTR MaLR 172 364 -1 21 36 0 0 chr15 77429014 77429042 -23951479 + AT_rich Low_complexity Low_complexity 1 28 0 1291 134 5 0 chr15 77430044 77430231 -23950290 + LTR18B LTR ERVL 1 188 -426 1215 133 119 91 chr15 77430235 77430520 -23950001 + LTR18B LTR ERVL 322 614 0 355 229 28 73 chr15 77430661 77430770 -23949751 + L1M2c LINE L1 3 106 -6683 * 6883 149 25 11 chr15 77430766 77431579 -23948942 + L1M2 LINE L1 4023 4867 -1414 2056 134 144 0 chr15 77431579 77431953 -23948568 - MSTA LTR MaLR 0 428 1 6883 149 25 11 chr15 77431953 77432635 -23947886 + L1M2 LINE L1 4867 5538 -743 695 194 0 22 chr15 77432635 77432774 -23947747 + FRAM SINE Alu 1 40 0 1098 300 91 50 chr15 77435724 77436530 -23943991 + HAL1b LINE L1 60 898 -450 657 262 17 12 chr15 77436542 77436714 -23943807 - MIR SINE MIR -17 245 73 1940 102 0 102 chr15 77437064 77437429 -23943092 + AluSx SINE Alu 1 333 0 2103 155 51 6 chr15 77437780 77438135 -23942386 - MLT1B LTR MaLR -5 385 15 22 0 0 0 chr15 77438236 77438258 -23942263 + AT_rich Low_complexity Low_complexity 1 22 0 268 242 10 81 chr15 77438412 77438511 -23942010 + MIR SINE MIR 54 145 -117 282 321 29 52 chr15 77438512 77438731 -23941790 + L1MC/D LINE L1 5675 5886 -319 4460 55 15 0 chr15 77439172 77439717 -23940804 + LTR13 LTR ERVK 1 553 -454 213 39 0 0 chr15 77439820 77439846 -23940675 + (GA)n Simple_repeat Simple_repeat 1 26 0 407 238 9 29 chr15 77439890 77439995 -23940526 - MIR SINE MIR -42 220 118 229 277 29 22 chr15 77440562 77440699 -23939822 + L1 LINE L1 2835 2972 -3174 23 54 0 0 chr15 77440750 77440787 -23939734 + AT_rich Low_complexity Low_complexity 1 37 0 262 232 89 36 chr15 77441108 77441220 -23939301 + L1 LINE L1 4723 4840 -1306 22 35 0 0 chr15 77441301 77441330 -23939191 + AT_rich Low_complexity Low_complexity 1 29 0 590 277 99 98 chr15 77441464 77441811 -23938710 + L1MC4a LINE L1 5187 5532 -614 460 19 0 0 chr15 77441811 77441863 -23938658 - U2 snRNA snRNA -136 52 1 590 277 99 98 chr15 77441863 77442318 -23938203 + L1MC4a LINE L1 5532 5274 -872 15422 130 43 14 chr15 77442318 77444317 -23936204 + Tigger1 DNA MER2_type 1 2078 -340 1924 133 60 0 chr15 77444317 77444602 -23935919 - AluSq SINE Alu -11 302 1 15422 130 43 14 chr15 77444602 77444953 -23935568 + Tigger1 DNA MER2_type 2078 2418 0 590 277 99 98 chr15 77444953 77445081 -23935440 + L1MC4a LINE L1 5273 5399 -747 257 313 0 0 chr15 77445346 77445413 -23935108 + GA-rich Low_complexity Low_complexity 4 70 0 366 277 127 24 chr15 77445737 77445903 -23934618 - MIR SINE MIR -34 228 46 217 298 141 58 chr15 77447522 77447643 -23932878 + L2 LINE L2 3121 3251 -21 263 146 18 0 chr15 77447658 77447713 -23932808 + GA-rich Low_complexity Low_complexity 4 59 0 829 279 45 5 chr15 77448827 77449049 -23931472 - MIR SINE MIR -6 256 26 182 216 0 0 chr15 77450871 77450908 -23929613 + L2 LINE L2 3272 3308 -5 367 211 391 6 chr15 77451978 77452139 -23928382 + MIR SINE MIR 11 233 -29 1722 169 11 0 chr15 77452146 77452425 -23928096 - MSTC LTR MaLR -1 427 146 1692 115 12 12 chr15 77453032 77453276 -23927245 + AluSg SINE Alu 58 301 -9 199 260 20 0 chr15 77454956 77455006 -23925515 - L2 LINE L2 -2 3311 3261 560 236 95 5 chr15 77455292 77455475 -23925046 + MIR SINE MIR 34 233 -29 359 369 40 13 chr15 77456351 77456500 -23924021 - L2 LINE L2 -16 3256 3104 550 234 55 14 chr15 77456892 77457037 -23923484 + MIR SINE MIR 7 157 -105 352 280 208 29 chr15 77458349 77458556 -23921965 + MIR SINE MIR 4 247 -15 338 272 0 33 chr15 77458643 77458735 -23921786 - MIR SINE MIR -92 170 82 24 0 0 0 chr15 77459299 77459323 -23921198 + AT_rich Low_complexity Low_complexity 1 24 0 1846 174 38 35 chr15 77460533 77460873 -23919648 - MER58B DNA MER1_type 0 341 1 1169 243 160 18 chr15 77460963 77461350 -23919171 - LTR33 LTR ERVL -77 444 3 312 161 0 0 chr15 77463740 77463802 -23916719 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 21 82 0 0 chr15 77465500 77465549 -23914972 + AT_rich Low_complexity Low_complexity 1 49 0 2921 254 55 50 chr15 77466583 77467011 -23913510 - L1ME3A LINE L1 -41 6129 5705 2403 82 0 0 chr15 77467011 77467304 -23913217 - AluSc SINE Alu -16 293 1 2921 254 55 50 chr15 77467304 77467866 -23912655 - L1ME3A LINE L1 -465 5705 5130 1620 154 0 85 chr15 77467866 77468185 -23912336 - AluJb SINE Alu -20 292 1 2921 254 55 50 chr15 77468185 77468534 -23911987 - L1ME3A LINE L1 -1040 5130 4784 218 288 15 0 chr15 77469977 77470043 -23910478 - L2 LINE L2 0 3313 3247 298 191 32 32 chr15 77470052 77470115 -23910406 + L2 LINE L2 3238 3300 -13 201 94 0 0 chr15 77470115 77470147 -23910374 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 1317 284 85 48 chr15 77470167 77470976 -23909545 - L2 LINE L2 -103 3210 2320 831 249 86 33 chr15 77471078 77471402 -23909119 - MLT1I LTR MaLR 0 409 98 678 155 27 74 chr15 77471494 77471642 -23908879 + MER5A DNA MER1_type 49 189 0 1579 87 0 36 chr15 77471973 77472192 -23908329 + AluY SINE Alu 100 310 -1 2295 100 3 19 chr15 77472757 77473068 -23907453 + AluSx SINE Alu 1 306 -6 297 286 105 0 chr15 77473078 77473183 -23907338 - MIR SINE MIR -97 165 50 2178 183 135 12 chr15 77473183 77473680 -23906841 - MER74A LTR ERVL 0 558 1 193 329 43 0 chr15 77473884 77473954 -23906567 - MIR SINE MIR -91 117 45 444 245 211 20 chr15 77474174 77474378 -23906143 + MIR SINE MIR 14 256 -6 289 404 70 36 chr15 77474865 77475281 -23905240 - L2 LINE L2 0 3272 2843 208 358 120 4 chr15 77475284 77475420 -23905101 - MIR SINE MIR -56 152 6 360 301 35 23 chr15 77475589 77475762 -23904759 + L1P LINE L1 4885 5059 -1087 1151 305 70 54 chr15 77475842 77476529 -23903992 + L1MEc LINE L1 37 744 -5652 2103 108 10 14 chr15 77476529 77476826 -23903695 - AluSx SINE Alu -16 296 1 1151 305 70 54 chr15 77476826 77477060 -23903461 + L1MEc LINE L1 744 973 -5423 1454 237 37 33 chr15 77477065 77477576 -23902945 - L1M4 LINE L1 -2781 3365 2853 231 250 16 0 chr15 77477604 77477668 -23902853 - L1MEc LINE L1 -5862 534 470 744 227 11 22 chr15 77477745 77477930 -23902591 - L1MEc LINE L1 -6180 216 34 1578 223 68 49 chr15 77477936 77478358 -23902163 + L1MEc LINE L1 1858 2261 -3954 2359 111 0 0 chr15 77478358 77478664 -23901857 + AluSp SINE Alu 1 306 -7 1578 223 68 49 chr15 77478664 77478987 -23901534 + L1MEc LINE L1 2261 2576 -3639 520 279 25 56 chr15 77478995 77479318 -23901203 - L1M4 LINE L1 -3527 2619 2307 239 272 125 54 chr15 77479784 77480008 -23900513 + MLT1K LTR MaLR 116 355 -233 265 195 203 34 chr15 77481807 77481925 -23898596 + L2 LINE L2 2922 3059 -254 520 306 70 77 chr15 77483064 77483495 -23897026 - L2 LINE L2 -33 3239 2812 372 320 90 28 chr15 77484036 77484214 -23896307 + HAL1 LINE L1 6 194 -2313 1221 253 135 31 chr15 77484223 77484764 -23895757 + HAL1 LINE L1 429 1025 -1482 1050 294 126 36 chr15 77484768 77485466 -23895055 + HAL1 LINE L1 1724 2484 -23 1523 249 195 0 chr15 77485902 77486380 -23894141 + MLT2F LTR ERVL 1 571 -92 1519 174 78 35 chr15 77486390 77486529 -23893992 + MLT1B LTR MaLR 31 162 -228 372 43 0 0 chr15 77486529 77486575 -23893946 + (TC)n Simple_repeat Simple_repeat 1 46 0 1519 174 78 35 chr15 77486575 77486780 -23893741 + MLT1B LTR MaLR 162 390 0 302 0 0 26 chr15 77486814 77486853 -23893668 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 2094 125 0 0 chr15 77486861 77487189 -23893332 - AluSc SINE Alu 0 328 1 1863 186 87 36 chr15 77487252 77487726 -23892795 + MLT1D LTR MaLR 8 505 0 558 195 160 18 chr15 77487823 77487992 -23892529 + L1MC4 LINE L1 7068 7260 -782 1269 272 42 40 chr15 77488016 77488538 -23891983 + L1MC4 LINE L1 7354 7876 -166 280 278 155 15 chr15 77488579 77488829 -23891692 + L1M4 LINE L1 5277 5577 -607 2206 119 0 0 chr15 77489014 77489307 -23891214 + AluSg SINE Alu 1 293 -17 21 36 0 0 chr15 77489555 77489583 -23890938 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr15 77490854 77490877 -23889644 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 322 262 128 18 chr15 77491295 77491459 -23889062 + MIR SINE MIR 1 182 -80 217 308 75 31 chr15 77491469 77491628 -23888893 + L3 LINE CR1 987 1152 -425 1951 189 39 84 chr15 77491640 77491859 -23888662 - MLT2B1 LTR ERVL 0 520 292 1804 159 55 3 chr15 77491859 77492148 -23888373 + AluJb SINE Alu 1 304 -8 1951 189 39 84 chr15 77492148 77492473 -23888048 - MLT2B1 LTR ERVL -228 292 1 349 349 40 7 chr15 77492562 77492714 -23887807 + L3 LINE CR1 1346 1502 -75 2106 116 164 13 chr15 77493158 77493530 -23886991 - MSTA LTR MaLR 0 428 1 197 356 89 22 chr15 77493592 77493727 -23886794 + L2 LINE L2 3104 3247 -25 304 392 26 0 chr15 77493842 77493995 -23886526 - L2 LINE L2 0 3272 3116 224 351 21 0 chr15 77494022 77494116 -23886405 + L2 LINE L2 3141 3236 -36 257 348 11 0 chr15 77494212 77494304 -23886217 - L3 LINE CR1 -6 1571 1479 187 286 227 19 chr15 77495322 77495476 -23885045 + MIR SINE MIR 47 232 -30 199 274 41 0 chr15 77496050 77496123 -23884398 + MIR SINE MIR 117 192 -70 549 215 85 45 chr15 77496131 77496308 -23884213 + L2 LINE L2 3130 3313 0 250 128 0 0 chr15 77496376 77496415 -23884106 - 5S rRNA rRNA -82 39 1 355 274 28 0 chr15 77496976 77497082 -23883439 + L2 LINE L2 3164 3272 0 460 253 13 13 chr15 77497644 77497954 -23882567 + (CA)n Simple_repeat Simple_repeat 1 310 0 208 258 0 45 chr15 77498141 77498207 -23882314 + (CCCCG)n Simple_repeat Simple_repeat 2 64 0 266 329 35 28 chr15 77498366 77498509 -23882012 + MIR3 SINE MIR 2 145 -63 613 271 54 18 chr15 77499038 77499259 -23881262 + MIR SINE MIR 33 261 -1 271 211 200 0 chr15 77499843 77499938 -23880583 - MIR SINE MIR -36 226 113 207 0 0 0 chr15 77500530 77500553 -23879968 + (CAA)n Simple_repeat Simple_repeat 2 24 0 478 149 0 0 chr15 77500762 77500829 -23879692 + L1PA12 LINE L1 338 404 -7177 1409 266 121 28 chr15 77500852 77501322 -23879199 - MLT1F LTR MaLR -28 514 1 680 299 62 42 chr15 77501346 77501730 -23878791 + L1MEc LINE L1 1420 1811 -4585 41997 38 26 2 chr15 77501792 77506873 -23873648 + L1P LINE L1 1 5201 -945 198 0 0 0 chr15 77507593 77507615 -23872906 + (CAAAAA)n Simple_repeat Simple_repeat 4 25 0 496 243 191 11 chr15 77507897 77508086 -23872435 - MIR SINE MIR -27 235 13 2995 167 33 2 chr15 77508582 77509121 -23871400 + L1MB3 LINE L1 5628 6183 0 705 269 89 42 chr15 77509343 77509778 -23870743 - L1P4 LINE L1 -339 5782 5329 2130 104 0 0 chr15 77509781 77510061 -23870460 - AluSx SINE Alu 0 312 33 411 298 130 25 chr15 77510062 77510300 -23870221 - L1M4 LINE L1 -846 5300 5038 210 191 0 0 chr15 77510604 77510651 -23869870 + (CA)n Simple_repeat Simple_repeat 2 48 0 480 248 57 71 chr15 77510924 77511134 -23869387 - MIR SINE MIR -9 253 47 2373 87 0 3 chr15 77511957 77512255 -23868266 - AluSc SINE Alu -12 297 1 24 0 0 0 chr15 77512284 77512308 -23868213 + AT_rich Low_complexity Low_complexity 1 24 0 1540 186 73 24 chr15 77512954 77513326 -23867195 + MLT1B LTR MaLR 1 390 0 315 283 119 18 chr15 77513326 77513526 -23866995 - MIR SINE MIR -21 241 8 209 59 59 0 chr15 77513837 77513871 -23866650 + CT-rich Low_complexity Low_complexity 3 38 0 271 300 154 0 chr15 77513916 77514026 -23866495 + L2 LINE L2 3138 3264 -8 309 306 18 9 chr15 77514232 77514343 -23866178 + MIR3 SINE MIR 93 204 -4 2159 129 3 0 chr15 77515563 77515865 -23864656 - AluSq SINE Alu -10 303 1 504 273 41 36 chr15 77515876 77516070 -23864451 + MER102b DNA MER1_type 138 332 -9 299 336 73 0 chr15 77516158 77516295 -23864226 - L2 LINE L2 -1 3271 3125 244 309 87 16 chr15 77517190 77517316 -23863205 - MIR SINE MIR -41 221 87 195 330 0 33 chr15 77518239 77518330 -23862191 - L2 LINE L2 -181 3091 3004 1775 191 25 8 chr15 77520142 77520498 -23860023 + MLT1A1 LTR MaLR 1 362 -3 632 305 120 22 chr15 77520546 77520953 -23859568 - LTR16A LTR ERVL -1 449 3 1017 318 57 15 chr15 77521126 77521850 -23858671 - ERVL LTR ERVL -438 5326 4516 3589 304 55 19 chr15 77521870 77523492 -23857029 - ERVL LTR ERVL -2006 2990 1200 594 298 57 19 chr15 77523503 77523765 -23856756 - LTR16A LTR ERVL -119 331 60 359 326 73 13 chr15 77524105 77524421 -23856100 - L2 LINE L2 -545 2769 2435 303 322 22 0 chr15 77524870 77524960 -23855561 + MER115 DNA AcHobo 18 109 -584 262 278 0 0 chr15 77525194 77525248 -23855273 + Zaphod DNA AcHobo 3978 4031 0 1042 197 4 64 chr15 77525256 77525489 -23855032 - MER20 DNA MER1_type 0 219 1 238 283 141 0 chr15 77526583 77526682 -23853839 + L2 LINE L2 3156 3268 -4 531 300 82 13 chr15 77526857 77527090 -23853431 - MIR SINE MIR -12 250 2 2137 91 49 0 chr15 77527583 77527868 -23852653 + AluSg SINE Alu 2 300 -10 373 296 92 13 chr15 77528197 77528349 -23852172 - MIR SINE MIR -70 192 29 1019 201 59 0 chr15 77529814 77530018 -23850503 - MER20 DNA MER1_type 0 219 4 1484 268 75 15 chr15 77530798 77531197 -23849324 + LTR16C LTR ERVL 69 491 0 28 0 0 0 chr15 77531823 77531851 -23848670 + AT_rich Low_complexity Low_complexity 1 28 0 5027 167 28 26 chr15 77531855 77532678 -23847843 - L1MA9 LINE L1 -42 6270 5443 2344 89 7 0 chr15 77532678 77532969 -23847552 - AluSg SINE Alu -17 293 1 5027 167 28 26 chr15 77532969 77533331 -23847190 - L1MA9 LINE L1 -869 5443 5083 402 282 18 37 chr15 77533738 77533901 -23846620 - AluJo SINE Alu -152 160 1 4297 144 10 1 chr15 77534373 77535055 -23845466 - L1PB1 LINE L1 0 6151 5464 262 224 35 82 chr15 77535282 77535367 -23845154 - MIR3 SINE MIR -15 193 113 274 309 87 16 chr15 77536758 77536884 -23843637 + MIR SINE MIR 87 221 -41 345 333 70 13 chr15 77537760 77537916 -23842605 + L2 LINE L2 3107 3271 -1 500 273 41 36 chr15 77538004 77538198 -23842323 - MER102a DNA MER1_type -9 321 127 2146 129 3 0 chr15 77538209 77538511 -23842010 + AluSq SINE Alu 1 303 -10 340 306 18 9 chr15 77539731 77539842 -23840679 - MIR3 SINE MIR -4 204 93 307 291 154 0 chr15 77540048 77540158 -23840363 - L2 LINE L2 -8 3264 3138 209 59 59 0 chr15 77540203 77540237 -23840284 + GA-rich Low_complexity Low_complexity 3 38 0 421 268 143 17 chr15 77540548 77540748 -23839773 + MIR SINE MIR 8 241 -21 1639 186 73 24 chr15 77540748 77541120 -23839401 - MLT1B LTR MaLR 0 390 1 24 0 0 0 chr15 77541766 77541790 -23838731 + AT_rich Low_complexity Low_complexity 1 24 0 2348 90 0 3 chr15 77541819 77542118 -23838403 + AluSc SINE Alu 1 298 -11 547 281 51 66 chr15 77543031 77543287 -23837234 + MIR SINE MIR 2 253 -9 217 244 0 0 chr15 77543557 77543602 -23836919 + (TG)n Simple_repeat Simple_repeat 2 46 0 725 279 107 36 chr15 77543906 77544145 -23836376 + L1ME LINE L1 5038 5259 -862 2076 111 0 0 chr15 77544145 77544425 -23836096 + AluSx SINE Alu 33 312 0 725 279 107 36 chr15 77544425 77544862 -23835659 + L1ME LINE L1 5259 5782 -339 3109 167 33 2 chr15 77545084 77545623 -23834898 - L1MB3 LINE L1 0 6183 5628 573 238 191 11 chr15 77546119 77546308 -23834213 + MIR SINE MIR 13 235 -27 226 269 119 36 chr15 77546392 77546585 -23833936 + L1M4 LINE L1 4030 4238 -1908 198 0 0 0 chr15 77546590 77546612 -23833909 + (TTTTTG)n Simple_repeat Simple_repeat 4 25 0 8143 31 4 0 chr15 77547332 77548292 -23832229 - L1P LINE L1 -945 5201 4238 240 279 114 31 chr15 77548810 77548987 -23831534 - MIR SINE MIR -30 232 16 1195 201 0 18 chr15 77548997 77549216 -23831305 - MER58A DNA MER1_type -9 215 1 524 303 22 6 chr15 77550874 77551052 -23829469 + Charlie8 DNA MER1_type 84 264 -2153 252 256 219 15 chr15 77551306 77551443 -23829078 + MIR3 SINE MIR 19 183 -25 310 339 92 32 chr15 77551865 77552234 -23828287 + MLT1L LTR MaLR 192 582 -33 446 199 41 64 chr15 77552596 77552764 -23827757 - MER104 DNA Tc2 -3 177 14 1578 205 92 5 chr15 77552764 77553185 -23827336 + MER89 LTR ERV1 1 559 0 3091 145 46 15 chr15 77553839 77554058 -23826463 + MER34 LTR ERV1 4 215 -327 2786 151 19 2 chr15 77554058 77554483 -23826038 - MSTB1 LTR MaLR 0 432 1 3091 145 46 15 chr15 77554483 77554786 -23825735 + MER34 LTR ERV1 215 542 0 523 234 209 67 chr15 77555764 77556046 -23824475 - L1MC4a LINE L1 -1880 5928 5607 245 271 0 0 chr15 77556047 77556117 -23824404 + MIR SINE MIR 137 206 -56 270 323 57 97 chr15 77557344 77557849 -23822672 + L2 LINE L2 2430 2914 -400 722 220 65 9 chr15 77558586 77558818 -23821703 - HAL1b LINE L1 -205 1143 899 1039 284 100 23 chr15 77558894 77559114 -23821407 - L2 LINE L2 -145 3168 2966 2682 146 36 2 chr15 77559114 77559532 -23820989 - MSTB1 LTR MaLR 0 432 1 1039 284 100 23 chr15 77559532 77559831 -23820690 - L2 LINE L2 -347 2966 2617 1734 221 49 15 chr15 77559894 77560305 -23820216 - MLT1C LTR MaLR -9 458 34 4011 289 117 24 chr15 77560369 77562240 -23818281 - L2 LINE L2 -825 2489 444 2115 120 11 0 chr15 77564291 77564575 -23815946 - AluSx SINE Alu -25 287 1 4121 89 15 0 chr15 77565006 77565545 -23814976 - L1PA13 LINE L1 -5 6158 5612 412 270 139 69 chr15 77566014 77566418 -23814103 + LTR67 LTR ERVL 126 557 0 512 296 13 31 chr15 77566585 77566785 -23813736 + MIR3 SINE MIR 4 200 -8 1996 144 20 0 chr15 77567101 77567406 -23813115 + AluSx SINE Alu 1 311 -1 376 261 11 0 chr15 77567613 77567701 -23812820 + L2 LINE L2 3221 3309 -4 219 333 0 0 chr15 77567750 77567810 -23812711 + L2 LINE L2 3205 3264 -8 801 311 49 4 chr15 77568531 77568775 -23811746 - MIR SINE MIR -6 256 2 321 267 17 69 chr15 77568786 77568902 -23811619 - L2 LINE L2 -88 3184 3075 953 277 38 42 chr15 77569117 77569230 -23811291 - L1MC4a LINE L1 -468 5823 5711 302 132 0 0 chr15 77569230 77569283 -23811238 - L1MD1 LINE L1 0 6242 6190 953 277 38 42 chr15 77569283 77569601 -23810920 - L1MC4a LINE L1 -580 5711 5513 2261 88 17 3 chr15 77569871 77570165 -23810356 - AluSq SINE Alu -15 298 1 233 263 26 26 chr15 77571014 77571090 -23809431 + MIR SINE MIR 30 105 -103 662 237 71 13 chr15 77571120 77571344 -23809177 + MER5C DNA MER1_type 21 257 -67 293 252 54 0 chr15 77572002 77572113 -23808408 + MER5C DNA MER1_type 208 324 0 446 322 75 42 chr15 77572145 77572789 -23807732 - L1MEd LINE L1 -837 1653 898 378 303 49 7 chr15 77574091 77574233 -23806288 + MIR3 SINE MIR 54 201 -7 198 244 0 139 chr15 77578727 77578813 -23801708 + L2 LINE L2 3149 3222 -50 5888 193 29 14 chr15 77579222 77580314 -23800207 - L1PA13 LINE L1 -5021 1766 658 264 208 0 0 chr15 77580312 77580360 -23800161 + L1PB1 LINE L1 598 645 -6142 * 13441 182 12 8 chr15 77580751 77583981 -23796540 + L1PB1 LINE L1 3244 6482 -320 2294 261 55 60 chr15 77583962 77584765 -23795756 + L1M4 LINE L1 3837 4632 -1514 * 375 105 0 0 chr15 77584765 77584822 -23795699 + (TG)n Simple_repeat Simple_repeat 2 58 0 2294 261 55 60 chr15 77584822 77585276 -23795245 + L1M4 LINE L1 4632 5087 -1059 993 142 22 33 chr15 77585301 77585484 -23795037 + FRAM SINE Alu 1 176 0 268 263 0 83 chr15 77585494 77585553 -23794968 + L1M4 LINE L1 5106 5150 -996 2112 94 10 34 chr15 77585553 77585851 -23794670 + AluSg SINE Alu 3 293 -17 268 263 0 83 chr15 77585851 77585924 -23794597 + L1M4 LINE L1 5150 5227 -919 1116 159 20 15 chr15 77586088 77586283 -23794238 - L1MB2 LINE L1 0 6171 5976 187 150 0 25 chr15 77586468 77586508 -23794013 + MIR SINE MIR 123 161 -101 2055 148 104 22 chr15 77586509 77586921 -23793600 + MER52C LTR ERV1 1 446 -832 358 225 0 0 chr15 77586921 77586992 -23793529 + L1PA12 LINE L1 552 622 -6959 2636 187 80 2 chr15 77587010 77587524 -23792997 - L1PA12 LINE L1 -7026 555 2 884 145 0 0 chr15 77587532 77587656 -23792865 - FLAM_C SINE Alu -17 126 3 2539 231 18 16 chr15 77588490 77589035 -23791486 + MER77 LTR ERV1 54 599 -6 220 258 227 0 chr15 77590394 77590460 -23790061 - MIR SINE MIR -66 142 62 2502 255 95 84 chr15 77591255 77592046 -23788475 + Charlie2a DNA MER1_type 45 826 -2036 1831 81 17 0 chr15 77592046 77592282 -23788239 - AluSg SINE Alu -28 282 43 2502 255 95 84 chr15 77592282 77593706 -23786815 + Charlie2a DNA MER1_type 826 2283 -579 657 285 124 28 chr15 77593807 77594130 -23786391 + MLT1J2 LTR MaLR 97 450 0 966 210 49 57 chr15 77594138 77594452 -23786069 + Charlie2a DNA MER1_type 2284 2596 -266 2530 46 3 0 chr15 77594452 77594756 -23785765 + AluY SINE Alu 1 305 -6 966 210 49 57 chr15 77594756 77594807 -23785714 + Charlie2a DNA MER1_type 2596 2646 -216 180 0 0 0 chr15 77595080 77595100 -23785421 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 291 54 0 0 chr15 77595099 77595136 -23785385 + (CA)n Simple_repeat Simple_repeat 1 37 0 490 348 50 5 chr15 77595655 77595876 -23784645 + L3 LINE CR1 901 1131 -446 1034 9 0 0 chr15 77596185 77596300 -23784221 + AluY SINE Alu 197 311 0 2643 132 57 12 chr15 77596560 77596963 -23783558 + MSTA LTR MaLR 5 425 -3 5759 122 43 17 chr15 77597913 77598791 -23781730 + MER4D LTR ERV1 3 903 0 2690 129 3 0 chr15 77599617 77599980 -23780541 + THE1B LTR MaLR 1 364 0 1219 212 107 132 chr15 77600231 77600313 -23780208 + LTR8A LTR ERV1 1 83 -644 198 71 0 0 chr15 77600313 77600341 -23780180 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1219 212 107 132 chr15 77600341 77601003 -23779518 + LTR8A LTR ERV1 83 727 0 353 137 0 0 chr15 77601801 77601852 -23778669 - LTR33A LTR ERVL -2 521 471 1295 105 6 0 chr15 77602127 77602298 -23778223 + AluSg/x SINE Alu 121 292 -20 720 157 179 0 chr15 77602298 77602438 -23778083 + LTR36 LTR ERV1 112 276 -335 1277 160 34 0 chr15 77602554 77602791 -23777730 + MER90 LTR ERV1 1 285 -329 2164 135 111 95 chr15 77602791 77603288 -23777233 - LTR36 LTR ERV1 0 611 107 802 211 87 0 chr15 77603288 77603449 -23777072 - FAM SINE Alu 0 175 1 271 235 123 16 chr15 77603641 77603741 -23776780 + MER5A DNA MER1_type 10 123 -66 267 328 50 17 chr15 77603913 77604032 -23776489 + L3 LINE CR1 1230 1352 -225 183 245 132 0 chr15 77604079 77604132 -23776389 - L2 LINE L2 -351 2962 2903 884 236 53 74 chr15 77604188 77604565 -23775956 + L2 LINE L2 2943 3311 -2 222 343 39 0 chr15 77604574 77604676 -23775845 - MIR SINE MIR -70 192 87 847 261 95 25 chr15 77604889 77605257 -23775264 - L1ME4a LINE L1 -238 5883 5490 203 175 0 0 chr15 77605585 77605625 -23774896 + T-rich Low_complexity Low_complexity 1 40 0 337 222 77 34 chr15 77605872 77605989 -23774532 - L1ME4a LINE L1 -1235 4911 4790 2901 183 36 2 chr15 77606503 77607005 -23773516 - LTR53 LTR ERVL 0 519 1 291 298 74 41 chr15 77607386 77607507 -23773014 - L1MC/D LINE L1 -734 5593 5469 652 298 36 24 chr15 77607586 77607838 -23772683 + MIR SINE MIR 4 258 -4 833 269 95 30 chr15 77607853 77608730 -23771791 - L1MC/D LINE L1 -2862 3267 2317 527 224 117 144 chr15 77608741 77609005 -23771516 - MIR SINE MIR -4 258 2 242 231 28 110 chr15 77609039 77609094 -23771427 - L1MC/D LINE L1 -3840 2289 2231 2425 81 3 0 chr15 77609094 77609391 -23771130 - AluSp SINE Alu -15 298 1 242 231 28 110 chr15 77609391 77609517 -23771004 - L1MC/D LINE L1 -3898 2231 2123 21 0 0 0 chr15 77609737 77609758 -23770763 + AT_rich Low_complexity Low_complexity 1 21 0 338 346 139 5 chr15 77609891 77610203 -23770318 - L1MC/D LINE L1 -863 1627 1368 1729 264 90 74 chr15 77610232 77610437 -23770084 - L1MC/D LINE L1 -4867 1252 1052 2100 133 0 3 chr15 77610437 77610731 -23769790 - AluSx SINE Alu -19 293 1 1729 264 90 74 chr15 77610731 77611754 -23768767 - L1MC/D LINE L1 -5067 1052 4 940 194 84 46 chr15 77612893 77613156 -23767365 - MLT1A1 LTR MaLR 0 365 93 325 214 12 71 chr15 77613156 77613240 -23767281 + MER5B DNA MER1_type 31 109 -69 331 197 197 0 chr15 77613240 77613316 -23767205 - MLT1A1 LTR MaLR -274 91 1 555 287 25 0 chr15 77613636 77613793 -23766728 + MIR3 SINE MIR 24 184 -24 373 214 86 64 chr15 77614500 77614640 -23765881 - MIR SINE MIR -112 150 8 400 225 94 51 chr15 77614723 77614861 -23765660 - MER5B DNA MER1_type -34 144 1 363 289 16 0 chr15 77615551 77615679 -23764842 + (TG)n Simple_repeat Simple_repeat 1 130 0 278 243 7 0 chr15 77615692 77615832 -23764689 + (TG)n Simple_repeat Simple_repeat 1 141 0 211 293 0 0 chr15 77615844 77615919 -23764602 + (TG)n Simple_repeat Simple_repeat 2 76 0 186 179 0 0 chr15 77615958 77616014 -23764507 + (TG)n Simple_repeat Simple_repeat 1 56 0 411 206 0 0 chr15 77616073 77616238 -23764283 + (TG)n Simple_repeat Simple_repeat 1 165 0 262 282 0 0 chr15 77616589 77616660 -23763861 - MIR3 SINE MIR -14 194 124 802 323 69 48 chr15 77616893 77617354 -23763167 - L2 LINE L2 -1 3312 2842 415 202 124 0 chr15 77617997 77618086 -23762435 - MER81 DNA DNA -5 109 10 639 200 7 40 chr15 77618088 77618201 -23762320 + MLT2B1 LTR ERVL 2 111 -409 2247 102 0 0 chr15 77618201 77618513 -23762008 + AluSx SINE Alu 2 313 0 639 200 7 40 chr15 77618513 77618548 -23761973 + MLT2B1 LTR ERVL 111 146 -374 5014 102 10 1 chr15 77619122 77619796 -23760725 - L1PB1 LINE L1 -8 6143 5464 436 236 24 55 chr15 77620023 77620150 -23760371 - MIR3 SINE MIR -15 193 71 227 245 123 97 chr15 77620263 77620418 -23760103 - MIR3 SINE MIR -42 166 8 2071 166 55 30 chr15 77620578 77621113 -23759408 + MLT2A2 LTR ERVL 1 547 -7 282 225 0 0 chr15 77621122 77621202 -23759319 + (TCCA)n Simple_repeat Simple_repeat 2 81 0 883 279 96 34 chr15 77621215 77621685 -23758836 - L2 LINE L2 -9 3304 2806 24 32 0 0 chr15 77621798 77621829 -23758692 + AT_rich Low_complexity Low_complexity 1 31 0 1298 140 8 70 chr15 77621963 77621997 -23758524 + L1M2 LINE L1 5383 5418 -756 624 203 35 0 chr15 77621997 77622140 -23758381 - L1MA8 LINE L1 -7 6284 6137 1298 140 8 70 chr15 77622140 77622204 -23758317 + L1M2 LINE L1 5418 5484 -690 1608 155 13 33 chr15 77622204 77622507 -23758014 + AluJo SINE Alu 1 297 -15 1298 140 8 70 chr15 77622507 77622682 -23757839 + L1M2 LINE L1 5484 5649 -525 510 288 43 101 chr15 77622685 77623081 -23757440 - L1MC4a LINE L1 -1877 5931 5559 482 172 69 0 chr15 77623247 77623334 -23757187 + L1MC1 LINE L1 6240 6332 -1 2017 267 51 11 chr15 77624055 77624147 -23756374 + MLT1G LTR MaLR 10 97 -493 1511 191 25 28 chr15 77624147 77624471 -23756050 - MER33 DNA MER1_type 0 324 2 2017 267 51 11 chr15 77624471 77624929 -23755592 + MLT1G LTR MaLR 97 582 -8 2328 97 0 3 chr15 77625667 77625975 -23754546 + AluSq SINE Alu 1 307 -6 292 361 63 12 chr15 77627249 77627504 -23753017 - LTR16C LTR ERVL 0 491 224 2090 121 0 29 chr15 77627753 77628066 -23752455 + AluSg1 SINE Alu 5 308 -1 1924 160 6 13 chr15 77628188 77628501 -23752020 + AluSx SINE Alu 1 311 -1 463 287 52 21 chr15 77628761 77628989 -23751532 - HERVL LTR ERVL -378 5146 4872 2740 329 30 64 chr15 77629371 77632154 -23748367 - HERVL LTR ERVL -1142 4512 1548 673 346 58 48 chr15 77632179 77632864 -23747657 - HERVL LTR ERVL -3596 1400 709 1210 230 0 9 chr15 77632872 77633098 -23747423 + MER58A DNA MER1_type 1 224 0 220 267 22 78 chr15 77633197 77633287 -23747234 + MIR SINE MIR 22 106 -156 283 277 143 40 chr15 77633725 77633949 -23746572 - L2 LINE L2 -1053 2261 2015 1612 180 3 50 chr15 77634169 77634491 -23746030 + AluJo SINE Alu 1 307 -5 275 281 74 8 chr15 77634849 77634970 -23745551 - L3 LINE CR1 -257 1320 1192 183 232 61 61 chr15 77635478 77635560 -23744961 - MIR SINE MIR -1 261 180 2327 91 17 0 chr15 77635804 77636101 -23744420 + AluSx SINE Alu 1 312 0 331 352 84 17 chr15 77637419 77637598 -23742923 - MIR3 SINE MIR -2 206 16 33 43 0 0 chr15 77637791 77637838 -23742683 + AT_rich Low_complexity Low_complexity 1 47 0 1631 177 74 3 chr15 77637846 77638129 -23742392 - AluJb SINE Alu -9 303 1 435 276 87 53 chr15 77638263 77638585 -23741936 - L1ME4a LINE L1 -153 5968 5636 297 0 0 0 chr15 77641077 77641110 -23739411 + (TG)n Simple_repeat Simple_repeat 2 34 0 3907 143 10 2 chr15 77641346 77641932 -23738589 + LTR39 LTR ERV1 47 637 -146 920 196 98 0 chr15 77641974 77642178 -23738343 - MER90 LTR ERV1 0 614 391 720 224 7 7 chr15 77642185 77642328 -23738193 + LTR39 LTR ERV1 641 783 0 1463 83 32 18 chr15 77642954 77643171 -23737350 + LTR39 LTR ERV1 1 220 -563 2080 170 47 5 chr15 77643171 77643554 -23736967 - MER83 LTR ERV1 0 448 50 858 82 0 0 chr15 77643553 77643663 -23736858 - MER83 LTR ERV1 -338 110 1 * 2281 133 3 20 chr15 77643664 77643784 -23736737 + LTR39 LTR ERV1 219 340 -443 3477 73 62 2 chr15 77643784 77644223 -23736298 + MER4C LTR ERV1 1 465 0 2281 133 3 20 chr15 77644223 77644447 -23736074 + LTR39 LTR ERV1 340 557 -226 3753 168 40 11 chr15 77644455 77645197 -23735324 - LTR1B LTR ERV1 -2 783 1 1926 137 30 20 chr15 77645197 77645635 -23734886 + MER61D LTR ERV1 3 501 0 1089 196 67 5 chr15 77645635 77645850 -23734671 + LTR39 LTR ERV1 555 783 0 429 294 122 84 chr15 77646015 77646708 -23733813 - L1ME4a LINE L1 -758 5388 4664 2777 85 19 22 chr15 77646708 77647073 -23733448 - THE1B LTR MaLR 0 364 1 429 294 122 84 chr15 77647073 77647118 -23733403 - L1ME4a LINE L1 -1482 4664 4622 1390 171 16 79 chr15 77647125 77647430 -23733091 - AluJb SINE Alu -22 290 5 237 319 26 0 chr15 77647470 77647583 -23732938 - L1ME4a LINE L1 -1525 4621 4506 23 0 0 0 chr15 77647881 77647904 -23732617 + AT_rich Low_complexity Low_complexity 1 23 0 2185 109 115 3 chr15 77647904 77648234 -23732287 - L1PB1 LINE L1 0 6151 5785 469 269 47 7 chr15 77648273 77648422 -23732099 - MIR SINE MIR -56 206 52 6069 165 4 4 chr15 77648719 77649769 -23730752 - L1P LINE L1 -1635 4511 3462 6780 87 12 5 chr15 77649777 77649991 -23730530 + L1PA13 LINE L1 4826 5037 -1126 2583 106 17 14 chr15 77649991 77650351 -23730170 - THE1B LTR MaLR -3 361 1 6780 87 12 5 chr15 77650351 77651471 -23729050 + L1PA13 LINE L1 5037 6161 -2 585 311 84 3 chr15 77651612 77651911 -23728610 + L2 LINE L2 1635 1957 -1357 1099 251 101 41 chr15 77651912 77652347 -23728174 + MLT1C LTR MaLR 6 466 -1 1416 258 133 32 chr15 77652357 77653043 -23727478 + L2 LINE L2 1960 2714 -600 1078 272 139 6 chr15 77653053 77653413 -23727108 + L1MD2 LINE L1 5693 6100 -259 812 302 152 25 chr15 77653426 77653882 -23726639 + L2 LINE L2 2791 3303 -10 1147 191 48 5 chr15 77654642 77654852 -23725669 - MER20 DNA MER1_type 0 219 1 1771 173 7 13 chr15 77655403 77655709 -23724812 - AluJb SINE Alu -7 305 2 240 208 0 0 chr15 77655790 77655838 -23724683 + (TGAA)n Simple_repeat Simple_repeat 4 51 0 749 214 11 39 chr15 77656038 77656216 -23724305 - MLT1F LTR MaLR 0 542 370 1833 163 0 3 chr15 77656381 77656675 -23723846 + AluJb SINE Alu 1 293 -19 205 289 56 56 chr15 77656961 77657051 -23723470 + L2 LINE L2 3201 3290 -23 3861 137 43 8 chr15 77657798 77658978 -23721543 + L1PBa LINE L1 2318 3536 -3326 196 198 0 55 chr15 77708986 77709077 -23671444 + CT-rich Low_complexity Low_complexity 1 86 0 * 532 216 18 29 chr15 77709073 77709357 -23671164 + T-rich Low_complexity Low_complexity 1 280 0 533 262 0 6 chr15 77709402 77709570 -23670951 - AluSc SINE Alu -142 167 1 260 151 274 0 chr15 77709573 77709646 -23670875 + MER112 DNA MER1_type 137 229 -31 259 207 67 152 chr15 77709825 77709946 -23670575 - HAL1b LINE L1 -452 896 766 2554 74 0 0 chr15 77709946 77710256 -23670265 - AluY SINE Alu -1 310 1 2138 123 0 0 chr15 77710258 77710550 -23669971 - AluSg1 SINE Alu -17 292 1 259 207 67 152 chr15 77710550 77710589 -23669932 - HAL1b LINE L1 -583 765 747 2402 80 0 7 chr15 77710702 77711002 -23669519 - AluSc SINE Alu -11 298 1 21 57 0 0 chr15 77711621 77711656 -23668865 + AT_rich Low_complexity Low_complexity 1 35 0 358 153 0 35 chr15 77712235 77712320 -23668201 + GA-rich Low_complexity Low_complexity 4 85 0 1560 250 21 61 chr15 77712504 77712980 -23667541 + LTR40a LTR ERVL 63 519 0 327 186 0 0 chr15 77712984 77713043 -23667478 + HERVL40 LTR ERVL 17 75 -5455 803 284 78 23 chr15 77713272 77713922 -23666599 + HERVL40 LTR ERVL 918 1611 -3919 * 7114 230 64 25 chr15 77713921 77714094 -23666427 + HERVL40 LTR ERVL 2522 2687 -2843 2042 111 27 60 chr15 77714094 77714464 -23666057 - L1MA4 LINE L1 -6 6294 5937 686 155 39 0 chr15 77714464 77714588 -23665933 - L1MD1 LINE L1 0 6242 6109 7114 230 64 25 chr15 77714588 77716149 -23664372 + HERVL40 LTR ERVL 2686 4325 -1205 402 359 8 12 chr15 77716153 77716404 -23664117 + MER89-int LTR ERV1 6271 6520 -281 * 1433 220 10 0 chr15 77716266 77716603 -23663918 + HERVL40 LTR ERVL 2791 5528 -2 1796 222 82 16 chr15 77716605 77717091 -23663430 + LTR40a LTR ERVL 1 518 -1 228 333 47 25 chr15 77717134 77717494 -23663027 - L1M4 LINE L1 -1439 4707 4340 515 238 48 0 chr15 77717906 77718053 -23662468 - MER103 DNA DNA -9 157 4 1825 169 46 25 chr15 77718176 77718542 -23661979 + MLT1A2 LTR MaLR 1 374 0 243 306 37 37 chr15 77718649 77718783 -23661738 - HAL1b LINE L1 -962 386 253 647 245 150 21 chr15 77719178 77719411 -23661110 - Charlie8 DNA MER1_type -2148 269 7 224 241 0 0 chr15 77719462 77719516 -23661005 - L2 LINE L2 -932 2382 2329 238 242 0 33 chr15 77719691 77719782 -23660739 - MIR SINE MIR -29 233 146 2192 135 3 0 chr15 77719824 77720135 -23660386 + AluSx SINE Alu 1 312 0 192 279 89 0 chr15 77720798 77720877 -23659644 - MIR SINE MIR -72 136 51 222 323 21 21 chr15 77722659 77722755 -23657766 - MER5A DNA MER1_type -8 181 86 677 289 45 8 chr15 77722987 77723233 -23657288 + MLT1L LTR MaLR 357 611 -4 352 322 190 19 chr15 77723308 77723397 -23657124 - MIR SINE MIR -3 259 187 3517 87 0 4 chr15 77723397 77723858 -23656663 + LTR46 LTR ERV1 1 459 -1 352 322 190 19 chr15 77723858 77723979 -23656542 - MIR SINE MIR -75 187 13 438 191 34 0 chr15 77724928 77725017 -23655504 + MER5A DNA MER1_type 14 105 -84 232 189 0 19 chr15 77726074 77726127 -23654394 + CT-rich Low_complexity Low_complexity 2 53 0 339 234 13 13 chr15 77726675 77726752 -23653769 + HERVL40 LTR ERVL 3350 3426 -2104 1189 264 19 6 chr15 77727146 77727460 -23653061 - MER58B DNA MER1_type -22 319 2 198 208 42 0 chr15 77727542 77727590 -23652931 - MER5B DNA MER1_type -4 174 125 2544 108 0 19 chr15 77727953 77728314 -23652207 + L1PA15 LINE L1 5701 6054 -111 2533 162 43 83 chr15 77728414 77729085 -23651436 + LTR5 LTR ERVK 312 955 -14 594 191 0 0 chr15 77729097 77729202 -23651319 + AluSg/x SINE Alu 199 303 -6 735 259 140 29 chr15 77729219 77729605 -23650916 - L1MC4a LINE L1 -1716 6092 5664 2106 93 32 4 chr15 77729692 77729971 -23650550 - AluSx SINE Alu -25 287 1 2155 133 0 7 chr15 77731246 77731548 -23648973 - AluSx SINE Alu -10 302 3 682 239 32 32 chr15 77731907 77732095 -23648426 + MIR SINE MIR 16 203 -59 2179 82 55 14 chr15 77733814 77734107 -23646414 + AluSg SINE Alu 1 305 -5 2190 128 0 0 chr15 77734120 77734417 -23646104 + AluSq SINE Alu 1 297 -16 1443 254 140 36 chr15 77734518 77734647 -23645874 - L2 LINE L2 0 3313 3199 735 78 0 0 chr15 77734647 77734750 -23645771 + (GGAA)n Simple_repeat Simple_repeat 1 103 0 1443 254 140 36 chr15 77734750 77735342 -23645179 - L2 LINE L2 -114 3199 2490 2338 89 0 0 chr15 77735342 77735634 -23644887 + AluSc SINE Alu 1 292 -17 1443 254 140 36 chr15 77735634 77735751 -23644770 - L2 LINE L2 -823 2490 2387 366 23 0 0 chr15 77735764 77735807 -23644714 + (TG)n Simple_repeat Simple_repeat 1 43 0 2307 92 3 13 chr15 77735822 77736125 -23644396 + AluSc SINE Alu 3 302 -7 190 200 0 0 chr15 77736173 77736208 -23644313 + MIR SINE MIR 212 246 -16 * 221 146 98 0 chr15 77736180 77736221 -23644300 + L2 LINE L2 3264 3308 -5 2213 83 0 74 chr15 77736671 77736997 -23643524 - AluSc SINE Alu -7 302 1 1589 104 0 4 chr15 77737126 77737350 -23643171 - pTR5 LTR ERV1 -126 588 172 249 306 10 0 chr15 77737351 77737449 -23643072 - LTR30 LTR ERV1 -80 642 544 4529 107 186 20 chr15 77737453 77738426 -23642095 - pTR5 LTR ERV1 -417 2021 743 2472 54 7 0 chr15 77738941 77739239 -23641282 + AluY SINE Alu 1 300 -11 1784 90 19 15 chr15 77739724 77739990 -23640531 + AluSx SINE Alu 1 267 -45 24 0 0 0 chr15 77739990 77740014 -23640507 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr15 77741219 77741258 -23639263 + GC_rich Low_complexity Low_complexity 1 39 0 431 200 219 25 chr15 77742207 77742367 -23638154 + MIR SINE MIR 14 204 -58 1710 97 16 24 chr15 77742375 77742623 -23637898 - AluY SINE Alu -65 246 1 2180 107 33 0 chr15 77743028 77743327 -23637194 - AluSg SINE Alu -1 309 1 4697 79 22 3 chr15 77743543 77744164 -23636357 + LTR10E LTR ERV1 1 633 0 1096 204 30 34 chr15 77744187 77744451 -23636070 + LTR10E-int LTR ERV1 27 289 -6360 262 156 22 0 chr15 77744659 77744704 -23635817 + LTR10E-int LTR ERV1 976 1021 -5628 1284 135 59 12 chr15 77745354 77745677 -23634844 + LTR10E-int LTR ERV1 1901 3772 -2674 5733 255 61 21 chr15 77746220 77747752 -23632769 + LTR10E-int LTR ERV1 4298 5890 -759 266 212 40 81 chr15 77747757 77747856 -23632665 + LTR10E-int LTR ERV1 6555 6649 0 4901 74 3 5 chr15 77747856 77748490 -23632031 + LTR10E LTR ERV1 1 633 0 372 198 127 76 chr15 77748980 77749137 -23631384 + MER103 DNA DNA 2 166 0 560 298 57 16 chr15 77749178 77749423 -23631098 + MER112 DNA MER1_type 2 256 0 773 322 107 60 chr15 77749679 77750731 -23629790 - L3 LINE CR1 -283 1294 194 810 173 8 0 chr15 77751278 77751405 -23629116 - FLAM_C SINE Alu -5 128 1 2474 77 0 0 chr15 77751539 77751839 -23628682 - AluY SINE Alu -11 300 1 3485 138 8 15 chr15 77751953 77752484 -23628037 - MER1A DNA MER1_type 0 527 1 2157 117 3 3 chr15 77752494 77752793 -23627728 - AluSx SINE Alu -13 299 1 1828 168 0 20 chr15 77752797 77753101 -23627420 - AluJb SINE Alu -14 298 1 249 246 231 23 chr15 77753102 77753155 -23627366 - MIR SINE MIR -55 207 166 2012 129 38 6 chr15 77753155 77753496 -23627025 - L1MB3 LINE L1 -1 6182 5831 249 246 231 23 chr15 77753496 77753572 -23626949 - MIR SINE MIR -96 166 51 285 297 196 14 chr15 77753576 77753795 -23626726 + L3 LINE CR1 1161 1419 -158 462 268 31 16 chr15 77754015 77754142 -23626379 - MARNA DNA Mariner -187 399 271 230 269 0 0 chr15 77754482 77754534 -23625987 + LTR10E LTR ERV1 1 52 -670 2312 125 154 3 chr15 77754534 77754911 -23625610 + LTR12 LTR ERV1 53 486 -228 310 248 80 32 chr15 77755289 77755414 -23625107 + L1ME4a LINE L1 5988 6118 -3 238 238 50 12 chr15 77755642 77755722 -23624799 - MER57A LTR ERV1 -25 378 296 2283 105 0 0 chr15 77755739 77756043 -23624478 - AluSx SINE Alu -8 304 1 1391 131 9 31 chr15 77756620 77756849 -23623672 - AluSg/x SINE Alu -2 308 85 205 242 22 0 chr15 77756913 77757004 -23623517 + (TA)n Simple_repeat Simple_repeat 1 93 0 746 255 81 47 chr15 77757073 77757635 -23622886 - L1ME LINE L1 -359 5811 5236 2511 56 0 0 chr15 77757677 77757965 -23622556 - AluY SINE Alu -23 288 1 211 313 16 0 chr15 77758364 77758428 -23622093 + L2 LINE L2 3199 3263 -9 2670 43 0 0 chr15 77759069 77759370 -23621151 - AluY SINE Alu -10 301 1 21 0 0 0 chr15 77759378 77759399 -23621122 + AT_rich Low_complexity Low_complexity 1 21 0 703 256 22 59 chr15 77759446 77759542 -23620979 + MIR SINE MIR 3 101 -161 1645 89 12 78 chr15 77759542 77759799 -23620722 - AluY SINE Alu -8 303 64 703 256 22 59 chr15 77759799 77759972 -23620549 + MIR SINE MIR 101 262 0 264 327 99 0 chr15 77760525 77760626 -23619895 + L2 LINE L2 3160 3270 -2 360 264 33 33 chr15 77760631 77760752 -23619769 + MIR SINE MIR 34 154 -108 36 91 0 0 chr15 77760761 77760860 -23619661 + AT_rich Low_complexity Low_complexity 1 99 0 1074 299 150 20 chr15 77761461 77762240 -23618281 + L2 LINE L2 2448 3312 -1 797 261 17 0 chr15 77762284 77762460 -23618061 - AluJb SINE Alu -13 299 121 298 271 0 0 chr15 77762865 77762950 -23617571 - L1ME LINE L1 -299 5822 5738 2135 138 0 0 chr15 77762963 77763268 -23617253 - AluSx SINE Alu -7 305 1 384 317 33 22 chr15 77764403 77764583 -23615938 + MIR3 SINE MIR 26 207 -1 802 213 142 0 chr15 77764879 77765118 -23615403 + MER33 DNA MER1_type 51 323 -1 22 0 0 0 chr15 77765956 77765978 -23614543 + AT_rich Low_complexity Low_complexity 1 22 0 454 170 170 0 chr15 77766627 77766721 -23613800 + Tigger3(Golem) DNA MER2_type 5 114 -2915 694 126 353 5 chr15 77766732 77766922 -23613599 + Tigger3(Golem) DNA MER2_type 2781 3036 0 25 0 0 0 chr15 77767201 77767226 -23613295 + GC_rich Low_complexity Low_complexity 1 25 0 410 321 62 6 chr15 77769145 77769307 -23611214 + MIR SINE MIR 23 193 -69 189 308 63 79 chr15 77769345 77769712 -23610809 - L2 LINE L2 -604 2710 2350 2194 86 28 3 chr15 77769963 77770253 -23610268 - AluSx SINE Alu -15 297 1 2158 66 38 7 chr15 77770259 77770546 -23609975 - AluY SINE Alu -15 296 1 831 124 8 0 chr15 77770674 77770795 -23609726 + AluSc SINE Alu 26 147 -162 2031 189 91 20 chr15 77770795 77771021 -23609500 + L1MD3 LINE L1 7464 7673 -322 2228 123 3 0 chr15 77771021 77771330 -23609191 + AluSg SINE Alu 1 310 0 2031 189 91 20 chr15 77771330 77771600 -23608921 + L1MD3 LINE L1 7673 7995 0 1894 128 3 37 chr15 77771609 77771907 -23608614 + AluY SINE Alu 1 288 -23 340 136 30 0 chr15 77771932 77771998 -23608523 + AluS SINE Alu 1 68 -235 1857 227 17 5 chr15 77772099 77772517 -23608004 - L1MB7 LINE L1 -59 6125 5703 1978 117 42 0 chr15 77772517 77772800 -23607721 + AluSx SINE Alu 1 295 -17 2721 39 7 0 chr15 77772968 77773277 -23607244 + AluY SINE Alu 1 311 0 486 305 70 0 chr15 77773556 77773769 -23606752 - MIR SINE MIR -34 228 1 757 291 99 12 chr15 77773772 77774116 -23606405 - L1ME3A LINE L1 -248 5922 5549 1956 134 7 10 chr15 77775365 77775671 -23604850 - AluSx SINE Alu -7 305 1 319 239 34 60 chr15 77775906 77775967 -23604554 + L1ME4a LINE L1 5820 5881 -240 2321 84 7 7 chr15 77775967 77776276 -23604245 + AluSc SINE Alu 1 309 0 1678 130 4 29 chr15 77776282 77776558 -23603963 + AluJo SINE Alu 44 312 0 319 239 34 60 chr15 77776558 77776606 -23603915 + L1ME4a LINE L1 5886 5933 -188 2245 92 3 0 chr15 77776829 77777112 -23603409 + AluSg SINE Alu 2 285 -25 4671 163 41 19 chr15 77777589 77778537 -23601984 + L1MB7 LINE L1 4914 5896 -288 1809 144 21 25 chr15 77778537 77778822 -23601699 + AluJo SINE Alu 13 296 -16 4671 163 41 19 chr15 77778822 77779102 -23601419 + L1MB7 LINE L1 5896 6168 -16 2495 209 57 25 chr15 77779098 77779771 -23600750 + L1MC4a LINE L1 5924 6617 -1191 * 264 30 0 0 chr15 77780931 77780964 -23599557 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 4520 193 112 20 chr15 77781005 77782104 -23598417 + L1MC4a LINE L1 6608 7807 -1 1380 193 35 8 chr15 77782221 77782480 -23598041 + AluJo SINE Alu 1 266 -46 2438 90 0 0 chr15 77782959 77783269 -23597252 + AluY SINE Alu 1 310 -1 188 287 165 21 chr15 77783319 77783507 -23597014 - MIR SINE MIR -1 261 47 189 353 24 24 chr15 77783613 77783698 -23596823 + L2 LINE L2 3186 3270 -2 233 302 214 0 chr15 77783744 77783870 -23596651 + L3 LINE CR1 970 1122 -455 2142 125 0 0 chr15 77784469 77784757 -23595764 - AluSx SINE Alu -24 288 1 236 270 162 9 chr15 77784814 77784925 -23595596 - MIR SINE MIR -24 238 111 461 203 149 87 chr15 77785082 77785520 -23595001 - MLT1J LTR MaLR -2 509 1 248 370 8 56 chr15 77785574 77785823 -23594698 - L2 LINE L2 -491 2823 2587 180 270 126 36 chr15 77786000 77786111 -23594410 - L2 LINE L2 -977 2337 2217 573 287 126 29 chr15 77787085 77787538 -23592983 - L1ME4a LINE L1 -104 6017 5521 425 294 96 18 chr15 77787730 77787948 -23592573 + MIR SINE MIR 13 247 -15 599 286 59 75 chr15 77788526 77788618 -23591903 - L1ME4a LINE L1 -837 5309 5217 2410 78 0 0 chr15 77788618 77788912 -23591609 - AluY SINE Alu -17 294 1 599 286 59 75 chr15 77788912 77789181 -23591340 - L1ME4a LINE L1 -929 5217 4945 2205 116 0 0 chr15 77789181 77789484 -23591037 - AluSx SINE Alu -9 303 1 599 286 59 75 chr15 77789484 77790071 -23590450 - L1ME4a LINE L1 -1201 4945 4375 481 268 120 0 chr15 77790440 77790582 -23589939 - MIR3 SINE MIR -16 192 34 2217 104 14 3 chr15 77790984 77791281 -23589240 - AluSg SINE Alu -10 300 1 267 151 274 0 chr15 77791284 77791357 -23589164 + MER112 DNA MER1_type 137 229 -31 255 213 67 152 chr15 77791536 77791657 -23588864 - HAL1b LINE L1 -452 896 766 2533 74 0 0 chr15 77791657 77791967 -23588554 - AluY SINE Alu -1 310 1 2135 120 0 0 chr15 77791969 77792261 -23588260 - AluSg1 SINE Alu -17 292 1 255 213 67 152 chr15 77792261 77792300 -23588221 - HAL1b LINE L1 -583 765 747 2379 80 0 7 chr15 77792413 77792713 -23587808 - AluSc SINE Alu -11 298 1 455 271 163 24 chr15 77793058 77793392 -23587129 - HAL1 LINE L1 -624 1883 1597 2055 126 17 0 chr15 77793392 77793686 -23586835 - AluSp SINE Alu -2 311 13 455 271 163 24 chr15 77793686 77794116 -23586405 - HAL1 LINE L1 -910 1597 816 2027 125 0 34 chr15 77794855 77795176 -23585345 + AluJb SINE Alu 1 310 -2 1084 329 58 28 chr15 77796585 77797202 -23583319 + L2 LINE L2 2320 2955 -359 360 326 104 10 chr15 77797832 77798025 -23582496 - L3 LINE CR1 -54 1523 1313 2022 112 56 0 chr15 77798140 77798425 -23582096 - AluSx SINE Alu -11 301 1 297 282 153 59 chr15 77798565 77798735 -23581786 - L2 LINE L2 -9 3304 3119 959 234 152 113 chr15 77799396 77799944 -23580577 - MLT1K LTR MaLR -3 585 17 355 250 64 144 chr15 77800232 77800592 -23579929 + L3 LINE CR1 331 661 -916 738 310 87 4 chr15 77801130 77801359 -23579162 + MIR SINE MIR 1 248 -14 220 114 0 91 chr15 77801328 77801372 -23579149 + L2 LINE L2 3263 3302 -11 * 769 221 90 49 chr15 77801512 77801756 -23578765 + MIR SINE MIR 7 260 -2 1817 171 7 0 chr15 77802175 77802461 -23578060 - AluJo SINE Alu -24 288 1 251 170 21 0 chr15 77802999 77803046 -23577475 - MLT1B LTR MaLR -37 353 306 359 296 80 8 chr15 77803460 77803585 -23576936 - MIR3 SINE MIR -54 154 21 198 333 12 24 chr15 77804416 77804500 -23576021 + L2 LINE L2 3014 3096 -176 293 345 43 22 chr15 77804590 77804729 -23575792 - L3 LINE CR1 -113 1464 1323 2338 83 0 35 chr15 77805005 77805319 -23575202 + AluY SINE Alu 1 303 -8 231 217 72 48 chr15 77805592 77805675 -23574846 - MER112 DNA MER1_type -175 85 1 1329 107 0 0 chr15 77805884 77806062 -23574459 + AluSg/x SINE Alu 127 304 -6 308 270 112 19 chr15 77806269 77806484 -23574037 - L1M4c LINE L1 -4238 2587 2353 542 251 19 71 chr15 77806485 77806696 -23573825 + LTR4 LTR ERV1 1 200 -396 754 271 18 32 chr15 77806882 77807166 -23573355 + LTR4 LTR ERV1 317 596 0 1893 235 68 83 chr15 77807182 77807665 -23572856 - L1M4c LINE L1 -4486 2339 1851 2207 120 0 7 chr15 77807665 77807964 -23572557 - AluSc SINE Alu -11 298 2 1893 235 68 83 chr15 77807964 77808324 -23572197 - L1M4c LINE L1 -4974 1851 1487 2155 125 0 7 chr15 77808324 77808621 -23571900 - AluSc SINE Alu -14 295 1 1893 235 68 83 chr15 77808621 77808751 -23571770 - L1M4c LINE L1 -5338 1487 1357 2362 89 0 10 chr15 77808751 77809053 -23571468 - AluY SINE Alu -12 299 1 1893 235 68 83 chr15 77809053 77809310 -23571211 - L1M4c LINE L1 -5468 1357 976 2053 180 56 2 chr15 77809477 77809926 -23570595 - L1M4 LINE L1 -805 5341 4869 667 228 23 13 chr15 77809915 77810117 -23570404 - L1M1 LINE L1 -4630 1752 1509 * 4109 72 19 0 chr15 77810117 77810641 -23569880 + MER11B LTR ERVK 1 534 -702 2734 189 50 35 chr15 77810641 77811243 -23569278 - L1M4c LINE L1 -5918 624 14 688 289 27 46 chr15 77811935 77812198 -23568323 - MIR SINE MIR 0 262 5 1189 187 148 69 chr15 77812540 77812986 -23567535 + MER66A LTR ERV1 97 478 0 1433 130 0 10 chr15 77813255 77813463 -23567058 - AluSc SINE Alu -5 304 99 1669 135 0 4 chr15 77813563 77813800 -23566721 - AluSq SINE Alu -77 236 1 2111 129 3 0 chr15 77813866 77814161 -23566360 + AluSq SINE Alu 1 296 -17 2318 98 0 3 chr15 77814269 77814566 -23565955 - AluSc SINE Alu -13 296 1 1012 96 0 22 chr15 77814572 77814707 -23565814 - AluSq/x SINE Alu -181 132 1 225 0 0 0 chr15 77814744 77814769 -23565752 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1669 125 98 4 chr15 77814776 77815032 -23565489 - AluSx SINE Alu -32 280 1 1402 263 69 9 chr15 77815287 77815724 -23564797 - LTR16B LTR ERVL 0 464 2 406 263 160 47 chr15 77816075 77816288 -23564233 - MIR SINE MIR -6 256 20 2497 84 0 0 chr15 77816426 77816737 -23563784 - AluY SINE Alu 0 311 1 3304 143 97 18 chr15 77816914 77817020 -23563501 - L1MB5 LINE L1 0 6174 6078 2245 96 7 3 chr15 77817020 77817323 -23563198 - AluSx SINE Alu -8 304 1 3304 143 97 18 chr15 77817323 77817837 -23562684 - L1MB5 LINE L1 -96 6078 5505 25 0 0 0 chr15 77818673 77818698 -23561823 + AT_rich Low_complexity Low_complexity 1 25 0 278 261 52 7 chr15 77819507 77819660 -23560861 + (TA)n Simple_repeat Simple_repeat 1 160 0 696 288 55 65 chr15 77819707 77820287 -23560234 - L1ME4a LINE L1 -293 5828 5255 2077 113 7 13 chr15 77820294 77820596 -23559925 - AluSq SINE Alu -9 304 5 266 297 16 0 chr15 77821024 77821088 -23559433 + L2 LINE L2 3199 3263 -9 2100 109 31 0 chr15 77821735 77822028 -23558493 + AluSq SINE Alu 2 303 -10 891 271 29 4 chr15 77822038 77822282 -23558239 + MIR SINE MIR 3 252 -10 285 140 0 0 chr15 77822398 77822455 -23558066 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 257 318 16 0 chr15 77822777 77822840 -23557681 + L2 LINE L2 3160 3223 -49 349 286 41 0 chr15 77822896 77822994 -23557527 + MIR SINE MIR 53 154 -108 21 36 0 0 chr15 77823008 77823036 -23557485 + AT_rich Low_complexity Low_complexity 1 28 0 201 74 0 0 chr15 77823266 77823293 -23557228 + (T)n Simple_repeat Simple_repeat 1 27 0 1561 267 114 26 chr15 77823595 77823823 -23556698 + L2 LINE L2 2448 2655 -658 2383 89 0 0 chr15 77823823 77824127 -23556394 + AluY SINE Alu 1 304 -7 1561 267 114 26 chr15 77824127 77824709 -23555812 + L2 LINE L2 2655 3313 0 869 167 14 0 chr15 77824760 77824928 -23555593 - AluJb SINE Alu 0 305 136 415 285 21 82 chr15 77825346 77825637 -23554884 - L1ME LINE L1 -299 5822 5550 33 35 0 17 chr15 77825925 77825962 -23554559 + AT_rich Low_complexity Low_complexity 1 38 -19 2059 105 0 31 chr15 77825962 77826256 -23554265 + AluSc SINE Alu 1 285 -24 33 35 0 17 chr15 77826256 77826276 -23554245 + AT_rich Low_complexity Low_complexity 38 57 0 244 150 0 50 chr15 77826362 77826405 -23554116 + (TAA)n Simple_repeat Simple_repeat 2 43 -15 2348 82 0 0 chr15 77826405 77826687 -23553834 + AluSg SINE Alu 2 283 -27 244 150 0 50 chr15 77826687 77826703 -23553818 + (TAA)n Simple_repeat Simple_repeat 43 58 0 377 269 42 42 chr15 77827252 77827371 -23553150 + MIR3 SINE MIR 54 172 -36 904 208 122 4 chr15 77827704 77827949 -23552572 + MER33 DNA MER1_type 51 324 0 194 91 30 0 chr15 77828582 77828615 -23551906 + CT-rich Low_complexity Low_complexity 4 37 0 180 0 0 0 chr15 77828808 77828828 -23551693 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 22 0 0 0 chr15 77828956 77828978 -23551543 + AT_rich Low_complexity Low_complexity 1 22 0 2286 53 0 46 chr15 77828978 77829280 -23551241 - AluY SINE Alu -3 308 21 2418 94 0 0 chr15 77829440 77829747 -23550774 - AluSq SINE Alu -6 307 1 2369 66 0 47 chr15 77829978 77830296 -23550225 - AluY SINE Alu -8 303 1 2430 92 0 0 chr15 77830569 77830873 -23549648 + AluSq SINE Alu 1 304 -9 24 0 0 0 chr15 77830975 77830999 -23549522 + AT_rich Low_complexity Low_complexity 1 24 0 247 81 0 0 chr15 77831033 77831070 -23549451 + L1MB8 LINE L1 6142 6178 0 3686 198 66 24 chr15 77831078 77832013 -23548508 + L1ME1 LINE L1 5197 6334 0 2436 82 10 0 chr15 77832022 77832328 -23548193 + AluSc SINE Alu 1 309 0 515 317 143 48 chr15 77832549 77832969 -23547552 + L2 LINE L2 2804 3263 -9 2081 139 0 0 chr15 77832980 77833294 -23547227 + AluSx SINE Alu 1 314 0 2601 121 40 53 chr15 77833386 77833687 -23546834 + MSTC LTR MaLR 1 296 -132 2173 108 3 41 chr15 77833687 77834001 -23546520 + AluSg SINE Alu 1 302 -8 2601 121 40 53 chr15 77834001 77834129 -23546392 + MSTC LTR MaLR 296 424 -4 351 237 116 58 chr15 77834179 77834370 -23546151 - MIR SINE MIR -50 212 8 3015 256 124 81 chr15 77835054 77836084 -23544437 + L2 LINE L2 1382 2495 -819 2314 87 0 3 chr15 77836084 77836373 -23544148 + AluSc SINE Alu 1 288 -21 3015 256 124 81 chr15 77836373 77836806 -23543715 + L2 LINE L2 2495 2908 -406 2292 88 0 10 chr15 77837473 77837770 -23542751 - AluSg SINE Alu -16 294 1 2287 63 28 0 chr15 77837804 77838088 -23542433 - AluSp SINE Alu -21 292 1 2156 63 38 7 chr15 77838094 77838381 -23542140 - AluY SINE Alu -15 296 1 286 164 137 0 chr15 77838756 77838829 -23541692 - Charlie2 DNA MER1_type -489 2373 2291 1186 81 0 0 chr15 77838869 77839017 -23541504 - AluSq/x SINE Alu -165 148 1 905 204 102 66 chr15 77839017 77839321 -23541200 - Charlie2 DNA MER1_type -602 2260 1946 386 223 85 71 chr15 77839340 77839597 -23540924 - Charlie2 DNA MER1_type -2540 322 19 301 295 156 41 chr15 77839604 77839919 -23540602 + L2 LINE L2 2038 2388 -926 1992 90 0 17 chr15 77840191 77840528 -23539993 + AluSq SINE Alu 1 332 0 290 338 126 26 chr15 77840614 77840996 -23539525 + L2 LINE L2 2827 3246 -26 2326 49 21 0 chr15 77841423 77841711 -23538810 - AluY SINE Alu -15 296 3 848 224 0 0 chr15 77841739 77841895 -23538626 - FRAM SINE Alu -20 156 1 2032 121 0 7 chr15 77841925 77842230 -23538291 + AluSx SINE Alu 1 303 -9 325 260 82 27 chr15 77843202 77843348 -23537173 - L1MC5 LINE L1 -48 7913 7760 383 234 152 21 chr15 77843405 77843550 -23536971 - MIR3 SINE MIR -13 195 32 497 258 73 20 chr15 77844397 77844617 -23535904 - MIR SINE MIR -19 243 12 252 201 24 46 chr15 77845231 77845307 -23535214 + MLT1I LTR MaLR 314 438 -12 469 236 45 32 chr15 77845328 77845485 -23535036 - MLT1K LTR MaLR -50 538 380 552 253 48 24 chr15 77845487 77845653 -23534868 - L2 LINE L2 -43 3270 3101 475 330 42 13 chr15 77845668 77845907 -23534614 - L2 LINE L2 -338 2976 2731 183 156 0 0 chr15 77845922 77845954 -23534567 + (TG)n Simple_repeat Simple_repeat 2 33 0 1935 105 11 0 chr15 77846088 77846422 -23534099 - AluSc SINE Alu 0 337 1 1671 102 68 61 chr15 77846424 77846577 -23533944 - AluSx SINE Alu -16 296 139 2145 121 0 3 chr15 77846577 77846891 -23533630 - AluSq SINE Alu 0 313 1 1671 102 68 61 chr15 77846891 77847031 -23533490 - AluSx SINE Alu -173 139 1 844 154 0 7 chr15 77847031 77847180 -23533341 + L1MB4 LINE L1 5817 5964 -216 1598 169 0 14 chr15 77847353 77847637 -23532884 + AluJo SINE Alu 13 292 -20 1266 264 43 19 chr15 77848204 77848621 -23531900 - L2 LINE L2 -645 2669 2243 1682 100 88 4 chr15 77848727 77848978 -23531543 - AluSc SINE Alu -11 298 27 2148 90 3 0 chr15 77849123 77849411 -23531110 - AluSg SINE Alu -21 289 1 326 212 80 101 chr15 77850268 77850428 -23530093 + MLT1G1 LTR MaLR 441 548 -1 420 168 25 14 chr15 77850456 77850546 -23529975 + L1ME LINE L1 5670 5756 -410 325 260 82 27 chr15 77851312 77851458 -23529063 - L1MC5 LINE L1 -48 7913 7760 383 234 152 21 chr15 77851515 77851660 -23528861 - MIR3 SINE MIR -13 195 32 497 258 73 20 chr15 77852507 77852727 -23527794 - MIR SINE MIR -19 243 12 252 201 24 46 chr15 77853341 77853417 -23527104 + MLT1I LTR MaLR 314 438 -12 469 236 45 32 chr15 77853438 77853595 -23526926 - MLT1K LTR MaLR -50 538 380 565 247 48 24 chr15 77853597 77853763 -23526758 - L2 LINE L2 -43 3270 3101 475 330 42 13 chr15 77853778 77854017 -23526504 - L2 LINE L2 -338 2976 2731 183 156 0 0 chr15 77854032 77854064 -23526457 + (TG)n Simple_repeat Simple_repeat 2 33 0 1935 105 11 0 chr15 77854198 77854532 -23525989 - AluSc SINE Alu 0 337 1 1671 102 68 61 chr15 77854534 77854687 -23525834 - AluSx SINE Alu -16 296 139 2130 124 0 3 chr15 77854687 77855001 -23525520 - AluSq SINE Alu 0 313 1 1671 102 68 61 chr15 77855001 77855141 -23525380 - AluSx SINE Alu -173 139 1 844 154 0 7 chr15 77855141 77855290 -23525231 + L1MB3 LINE L1 5817 5964 -216 996 148 19 65 chr15 77855364 77855428 -23525093 + L1MB3 LINE L1 5969 6034 -149 2150 92 7 0 chr15 77855428 77855721 -23524800 + AluSp SINE Alu 1 295 -18 996 148 19 65 chr15 77855721 77855872 -23524649 + L1MB3 LINE L1 6034 6174 -9 2131 112 0 0 chr15 77856131 77856427 -23524094 - AluSx SINE Alu -16 296 1 1598 169 0 14 chr15 77856674 77856958 -23523563 + AluJo SINE Alu 13 292 -20 1266 264 43 19 chr15 77857525 77857942 -23522579 - L2 LINE L2 -645 2669 2243 1682 100 88 4 chr15 77858048 77858299 -23522222 - AluSc SINE Alu -11 298 27 2148 90 3 0 chr15 77858444 77858732 -23521789 - AluSg SINE Alu -21 289 1 326 212 80 101 chr15 77859589 77859749 -23520772 + MLT1G1 LTR MaLR 441 548 -1 1633 186 11 104 chr15 77859786 77860035 -23520486 + L1ME2 LINE L1 5678 5949 -215 2026 117 7 3 chr15 77860035 77860334 -23520187 - AluSx SINE Alu -12 300 1 1633 186 11 104 chr15 77860334 77860433 -23520088 + L1ME2 LINE L1 5949 5973 -191 1938 115 26 30 chr15 77860433 77860737 -23519784 + AluSx SINE Alu 1 303 -9 1633 186 11 104 chr15 77860737 77860859 -23519662 + L1ME2 LINE L1 5973 6105 -59 823 144 8 8 chr15 77860866 77860998 -23519523 + AluJb SINE Alu 2 133 -179 285 161 62 74 chr15 77861016 77861097 -23519424 + L1ME1 LINE L1 6097 6333 -1 2103 115 3 10 chr15 77861161 77861475 -23519046 + AluSx SINE Alu 1 312 0 188 421 13 0 chr15 77861483 77861559 -23518962 + L2 LINE L2 2685 2761 -553 2037 122 6 6 chr15 77861571 77861882 -23518639 - AluY SINE Alu 0 311 1 264 367 129 12 chr15 77862066 77862306 -23518215 + L2 LINE L2 2995 3262 -10 249 53 0 26 chr15 77864246 77864284 -23516237 - tRNA-Cys-TGC tRNA tRNA -38 37 1 681 179 27 30 chr15 77864291 77864439 -23516082 + MLT1G1 LTR MaLR 437 595 0 2130 93 0 7 chr15 77864736 77865038 -23515483 - AluSc SINE Alu -9 300 1 277 314 0 0 chr15 77865335 77865405 -23515116 + L2 LINE L2 3203 3272 0 1991 134 0 3 chr15 77865832 77866139 -23514382 - AluSq SINE Alu -2 311 6 23 68 0 0 chr15 77866340 77866384 -23514137 + AT_rich Low_complexity Low_complexity 1 44 0 216 45 23 45 chr15 77866387 77866431 -23514090 + (TA)n Simple_repeat Simple_repeat 2 44 0 254 275 43 0 chr15 77866515 77866584 -23513937 - MER91A DNA MER1_type -28 168 97 2156 104 0 3 chr15 77866865 77867162 -23513359 - AluSq SINE Alu -17 296 1 1438 180 50 98 chr15 77867387 77867626 -23512895 + LTR10B LTR ERV1 1 250 -297 2026 70 17 20 chr15 77867626 77867926 -23512595 - AluSc SINE Alu -10 299 1 1438 180 50 98 chr15 77867926 77868168 -23512353 + LTR10B LTR ERV1 250 547 0 833 153 8 0 chr15 77868197 77868328 -23512193 - FLAM_A SINE Alu -1 141 10 1199 256 52 67 chr15 77868362 77868647 -23511874 - L1ME LINE L1 -424 5746 5458 1571 131 120 0 chr15 77868647 77868914 -23511607 - AluSq SINE Alu -14 299 1 1199 256 52 67 chr15 77868914 77869284 -23511237 - L1ME LINE L1 -712 5458 5095 2308 87 0 3 chr15 77869284 77869595 -23510926 - AluY SINE Alu -1 310 1 1199 256 52 67 chr15 77869595 77869660 -23510861 - L1ME LINE L1 -1075 5095 5031 2630 230 89 31 chr15 77869673 77870945 -23509576 - L1ME3 LINE L1 -6 6156 4602 2110 110 3 3 chr15 77870945 77871246 -23509275 - AluSx SINE Alu -11 301 1 2630 230 89 31 chr15 77871246 77871491 -23509030 - L1ME3 LINE L1 -1560 4602 4373 2061 103 38 0 chr15 77871603 77871895 -23508626 - AluSp SINE Alu -10 303 1 503 207 117 42 chr15 77871969 77872182 -23508339 - L1ME2 LINE L1 -14 6150 5922 1851 148 10 0 chr15 77872291 77872595 -23507926 - AluSx SINE Alu -5 307 1 871 223 6 0 chr15 77872626 77872792 -23507729 - FRAM SINE Alu -9 167 1 772 187 32 137 chr15 77872892 77873057 -23507464 - L1ME2 LINE L1 -1 6163 5982 2231 101 0 0 chr15 77873057 77873355 -23507166 - AluSg SINE Alu -12 298 1 1923 134 3 7 chr15 77873355 77873653 -23506868 - AluSx SINE Alu -15 297 1 772 187 32 137 chr15 77873653 77873866 -23506655 - L1ME2 LINE L1 -180 5984 5824 2209 111 0 7 chr15 77873875 77874181 -23506340 - AluSx SINE Alu -8 304 1 23 54 0 0 chr15 77874242 77874279 -23506242 + AT_rich Low_complexity Low_complexity 1 37 0 2126 107 0 0 chr15 77874307 77874596 -23505925 - AluSx SINE Alu -21 291 3 351 0 0 0 chr15 77874615 77874654 -23505867 + (TG)n Simple_repeat Simple_repeat 1 39 0 2046 93 0 0 chr15 77874654 77874922 -23505599 - AluSx SINE Alu -33 279 12 255 377 9 0 chr15 77874942 77875048 -23505473 + L2 LINE L2 3199 3305 -8 3565 126 13 19 chr15 77875048 77875578 -23504943 + MER1A DNA MER1_type 1 527 0 2011 172 97 35 chr15 77875613 77875721 -23504800 - MER74A LTR ERVL -3 555 455 2340 86 0 0 chr15 77875721 77876025 -23504496 + AluY SINE Alu 1 304 -7 2011 172 97 35 chr15 77876025 77876414 -23504107 - MER74A LTR ERVL -103 455 50 210 150 0 0 chr15 77876460 77876500 -23504021 + (CA)n Simple_repeat Simple_repeat 1 40 0 315 329 24 6 chr15 77876883 77877047 -23503474 - LTR67 LTR ERVL -7 550 384 2023 111 0 0 chr15 77877619 77877899 -23502622 + AluSx SINE Alu 1 280 -32 1468 125 152 8 chr15 77877917 77878173 -23502348 + AluSg1 SINE Alu 1 293 -16 2206 63 10 13 chr15 77878199 77878499 -23502022 + AluY SINE Alu 1 299 -12 399 328 26 41 chr15 77878700 77878895 -23501626 + MIR SINE MIR 15 206 -56 491 303 0 7 chr15 77878926 77879071 -23501450 + MER117 DNA MER1_type 3 146 -51 240 252 206 64 chr15 77879363 77879466 -23501055 + L2 LINE L2 2065 2152 -1162 1891 124 35 0 chr15 77879466 77879749 -23500772 - AluSx SINE Alu -18 294 2 240 252 206 64 chr15 77879749 77879863 -23500658 + L2 LINE L2 2152 2313 -1001 737 272 143 41 chr15 77879885 77880278 -23500243 - LTR67 LTR ERVL -18 539 107 369 220 47 173 chr15 77880362 77880576 -23499945 + MLT1J2 LTR MaLR 259 445 -5 269 301 125 44 chr15 77880630 77880926 -23499595 + L2 LINE L2 2354 2673 -641 776 153 0 6 chr15 77880926 77881102 -23499419 + (TCCA)n Simple_repeat Simple_repeat 3 177 0 250 65 22 22 chr15 77881114 77881160 -23499361 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 561 267 55 30 chr15 77881343 77881545 -23498976 - L2 LINE L2 -195 3077 2871 342 250 23 45 chr15 77881550 77881638 -23498883 + L2 LINE L2 3187 3272 0 260 262 215 13 chr15 77881805 77881954 -23498567 + L2 LINE L2 3124 3302 -11 2122 79 10 10 chr15 77882308 77882611 -23497910 - AluY SINE Alu -8 303 1 423 0 0 0 chr15 77882639 77882686 -23497835 + (TG)n Simple_repeat Simple_repeat 2 48 0 271 244 134 0 chr15 77882711 77882793 -23497728 + L2 LINE L2 3179 3271 -1 201 274 0 0 chr15 77883074 77883125 -23497396 - L2 LINE L2 0 3313 3263 318 179 154 13 chr15 77883511 77883589 -23496932 + MER81 DNA DNA 25 113 -1 261 275 143 0 chr15 77883846 77883937 -23496584 + L2 LINE L2 3168 3271 -1 2116 86 0 4 chr15 77883949 77884265 -23496256 + AluSg SINE Alu 1 315 0 389 319 44 44 chr15 77884909 77885135 -23495386 - L3 LINE CR1 -9 1568 1343 355 290 87 43 chr15 77885255 77885462 -23495059 - LTR33 LTR ERVL 0 521 306 450 277 168 7 chr15 77886023 77886178 -23494343 - MER5A DNA MER1_type -1 188 9 285 313 166 6 chr15 77886194 77886357 -23494164 + MER5A DNA MER1_type 1 189 0 441 185 49 0 chr15 77886607 77886688 -23493833 + MER58A DNA MER1_type 6 90 -17 1940 117 3 19 chr15 77887201 77887508 -23493013 + AluSx SINE Alu 1 302 -10 1599 132 15 7 chr15 77887945 77888218 -23492303 + AluSx SINE Alu 18 292 -20 667 201 25 44 chr15 77888625 77888784 -23491737 + Tigger2a DNA MER2_type 1 156 -278 639 214 24 0 chr15 77888968 77889094 -23491427 - FLAM_C SINE Alu -11 132 4 2142 113 3 10 chr15 77889871 77890171 -23490350 + AluSx SINE Alu 1 298 -14 771 171 59 7 chr15 77890945 77891097 -23489424 + MER20 DNA MER1_type 60 219 0 572 181 0 134 chr15 77891097 77891198 -23489323 + MER58A DNA MER1_type 98 211 -2209 2331 164 19 40 chr15 77891198 77891619 -23488902 - MLT2D LTR ERVL 0 414 3 2328 101 10 0 chr15 77891620 77891917 -23488604 + AluSg SINE Alu 1 300 -10 572 181 0 134 chr15 77891917 77891959 -23488562 + MER58A DNA MER1_type 210 223 -1 231 152 45 15 chr15 77892235 77892301 -23488220 + (TTATA)n Simple_repeat Simple_repeat 2 69 0 306 0 0 0 chr15 77892301 77892335 -23488186 + (GA)n Simple_repeat Simple_repeat 2 35 0 2224 123 3 0 chr15 77892849 77893158 -23487363 - AluSx SINE Alu -2 310 1 1573 159 35 17 chr15 77893834 77894123 -23486398 - AluJb SINE Alu -18 294 1 1738 214 139 14 chr15 77894306 77894880 -23485641 - L1MC4 LINE L1 -299 7743 7098 496 200 95 0 chr15 77895005 77895100 -23485421 + AluSg/x SINE Alu 177 280 -30 778 219 39 70 chr15 77895112 77895368 -23485153 + L1MC1 LINE L1 3183 3430 -2716 3656 220 23 36 chr15 77895376 77895664 -23484857 + L1MC1 LINE L1 4304 4594 -1552 2344 179 52 5 chr15 77895664 77896071 -23484450 + MSTB LTR MaLR 1 426 0 3656 220 23 36 chr15 77896071 77896767 -23483754 + L1MC1 LINE L1 4594 5298 -848 2246 98 7 0 chr15 77896767 77897064 -23483457 + AluY SINE Alu 1 299 -12 1926 122 20 14 chr15 77897067 77897361 -23483160 + AluSg SINE Alu 1 296 -14 3656 220 23 36 chr15 77897361 77897411 -23483110 + L1MC1 LINE L1 5300 5329 -817 2092 122 14 0 chr15 77897414 77897709 -23482812 + AluSp SINE Alu 1 299 -14 1452 111 31 4 chr15 77897711 77897936 -23482585 - L1MC/D LINE L1 -759 5585 5355 619 158 11 0 chr15 77897936 77898031 -23482490 - AluS SINE Alu -215 97 2 4313 164 37 1 chr15 77898033 77898764 -23481757 + L1MC1 LINE L1 5577 6333 0 2062 107 7 0 chr15 77899170 77899450 -23481071 - AluSx SINE Alu -6 306 25 501 125 0 0 chr15 77899452 77899516 -23481005 - AluS SINE Alu -248 65 2 2233 126 0 3 chr15 77899519 77899821 -23480700 - AluSx SINE Alu -11 301 1 2116 96 0 4 chr15 77899833 77900145 -23480376 - AluSg1 SINE Alu 0 311 1 964 211 103 9 chr15 77900384 77900607 -23479914 + MIR SINE MIR 8 251 -11 3591 185 32 85 chr15 77900810 77901132 -23479389 + L1ME1 LINE L1 5111 5449 -717 2254 105 0 10 chr15 77901132 77901436 -23479085 + AluSq SINE Alu 1 301 -12 3591 185 32 85 chr15 77901436 77902222 -23478299 + L1ME1 LINE L1 5449 6165 -1 952 199 28 0 chr15 77902452 77902628 -23477893 + AluJb SINE Alu 121 301 -11 2374 70 7 3 chr15 77902636 77902937 -23477584 - AluY SINE Alu -9 302 1 251 274 0 77 chr15 77903973 77904001 -23476520 + L1 LINE L1 3357 3386 -2760 2321 100 3 10 chr15 77904001 77904310 -23476211 + AluSg SINE Alu 1 307 -3 251 274 0 77 chr15 77904310 77904398 -23476123 + L1 LINE L1 3386 3464 -2682 315 381 29 17 chr15 77905030 77905209 -23475312 + L1 LINE L1 3714 3898 -2248 2337 106 0 0 chr15 77905209 77905511 -23475010 + AluSg SINE Alu 1 302 -8 315 381 29 17 chr15 77905511 77905570 -23474951 + L1 LINE L1 3898 3955 -2191 4187 130 64 9 chr15 77905607 77906291 -23474230 - L1MB3 LINE L1 -1 6182 5461 2023 95 14 11 chr15 77906299 77906643 -23473878 - AluSx SINE Alu 0 345 1 2265 88 3 7 chr15 77906651 77906948 -23473573 - AluSc SINE Alu -13 296 1 26 0 0 0 chr15 77907140 77907166 -23473355 + AT_rich Low_complexity Low_complexity 1 26 0 1940 109 0 8 chr15 77907221 77907519 -23473002 + AluSx SINE Alu 21 316 0 25 0 0 0 chr15 77907536 77907561 -23472960 + AT_rich Low_complexity Low_complexity 1 25 0 1850 168 7 3 chr15 77907566 77907864 -23472657 + AluJo SINE Alu 5 303 -9 180 0 0 0 chr15 77907869 77907889 -23472632 + (TA)n Simple_repeat Simple_repeat 2 21 0 514 105 21 32 chr15 77907991 77908086 -23472435 + AluSp/q SINE Alu 201 294 -19 2930 179 16 13 chr15 77908086 77908638 -23471883 + L1MC3 LINE L1 5324 5877 -1908 896 194 17 11 chr15 77908639 77908814 -23471707 + AluJb SINE Alu 120 295 -17 836 122 37 4 chr15 77908816 77908955 -23471566 + L1PA13 LINE L1 6030 6164 -1 884 267 61 46 chr15 77909148 77909190 -23471331 + LTR33 LTR ERVL 2 42 -479 2070 137 7 0 chr15 77909190 77909497 -23471024 - AluSx SINE Alu -3 309 1 884 267 61 46 chr15 77909497 77909799 -23470722 + LTR33 LTR ERVL 42 351 -170 525 291 110 18 chr15 77909978 77910205 -23470316 + MIR SINE MIR 1 248 -14 435 307 127 19 chr15 77910266 77910644 -23469877 + L1ME4a LINE L1 5313 5731 -2077 842 151 0 6 chr15 77910654 77910813 -23469708 + GA-rich Low_complexity Low_complexity 2 159 0 274 294 0 0 chr15 77910813 77910898 -23469623 + L1ME4a LINE L1 5736 5820 -1988 275 269 67 50 chr15 77910907 77911026 -23469495 + MER91C DNA MER1_type 1 121 -19 241 328 0 0 chr15 77911377 77911438 -23469083 + MER91C DNA MER1_type 136 196 0 1677 190 0 7 chr15 77911628 77911923 -23468598 - AluSx SINE Alu -19 293 1 257 267 130 40 chr15 77912130 77912377 -23468144 + L1ME4a LINE L1 5851 6119 -2 339 250 0 0 chr15 77912474 77912606 -23467915 + (TA)n Simple_repeat Simple_repeat 2 133 0 442 279 0 82 chr15 77913256 77913356 -23467165 - MER81 DNA DNA -2 112 21 2060 113 0 28 chr15 77913356 77913675 -23466846 + AluSx SINE Alu 1 311 0 442 279 0 82 chr15 77913675 77913695 -23466826 - MER81 DNA DNA -93 21 1 318 202 212 10 chr15 77913714 77913813 -23466708 + MIR SINE MIR 23 141 -67 2227 109 0 3 chr15 77914442 77914745 -23465776 - AluSx SINE Alu -10 302 1 429 254 101 0 chr15 77914745 77914883 -23465638 - L1M4 LINE L1 -1900 4246 4095 4745 130 71 59 chr15 77914883 77916318 -23464203 + pTR5 LTR ERV1 757 2438 0 3242 223 40 51 chr15 77916342 77916677 -23463844 - L1M4 LINE L1 -2018 4128 3791 2331 102 0 0 chr15 77916677 77916980 -23463541 - AluSg SINE Alu -7 303 1 189 0 0 0 chr15 77916980 77917001 -23463520 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1970 131 7 0 chr15 77917001 77917283 -23463238 - AluSx SINE Alu -28 284 1 3242 223 40 51 chr15 77917283 77917589 -23462932 - L1M4 LINE L1 -2353 3793 3497 2135 104 21 0 chr15 77917589 77917877 -23462644 - AluSg SINE Alu -16 294 1 3242 223 40 51 chr15 77917877 77918187 -23462334 - L1M4 LINE L1 -2649 3497 3185 2067 122 35 0 chr15 77918187 77918473 -23462048 - AluSx SINE Alu -16 296 1 793 146 0 23 chr15 77918473 77918603 -23461918 - AluJb SINE Alu -14 298 172 5928 129 68 84 chr15 77918603 77918895 -23461626 - L1MCa LINE L1 -5218 1208 913 1943 97 56 0 chr15 77918895 77919186 -23461335 + AluSg SINE Alu 1 306 0 5928 129 68 84 chr15 77919186 77919639 -23460882 - L1MCa LINE L1 -5513 913 486 1688 182 34 0 chr15 77919639 77919936 -23460585 + AluJb SINE Alu 1 307 -5 5928 129 68 84 chr15 77919936 77920415 -23460106 - L1MCa LINE L1 -5940 486 1 1115 257 129 55 chr15 77920541 77920578 -23459943 - LTR33 LTR ERVL -2 519 486 1887 176 0 3 chr15 77920578 77920890 -23459631 - AluJo SINE Alu -1 311 1 1115 257 129 55 chr15 77920890 77921308 -23459213 - LTR33 LTR ERVL -35 486 30 2093 130 3 3 chr15 77922208 77922509 -23458012 - AluSx SINE Alu -11 301 1 343 284 79 77 chr15 77922706 77922935 -23457586 - HAL1b LINE L1 -662 686 459 898 260 58 0 chr15 77922935 77923143 -23457378 - MER58A DNA MER1_type 0 224 5 343 284 79 77 chr15 77923143 77923420 -23457101 - HAL1b LINE L1 -889 459 179 23 33 0 0 chr15 77923596 77923626 -23456895 + AT_rich Low_complexity Low_complexity 1 30 0 1690 179 31 0 chr15 77923636 77923927 -23456594 + AluJo SINE Alu 1 300 -12 1579 186 176 32 chr15 77924506 77924909 -23455612 - MLT2B1 LTR ERVL -59 461 1 1990 105 0 84 chr15 77926369 77926702 -23453819 - AluSp SINE Alu -8 305 1 21 36 0 0 chr15 77927307 77927335 -23453186 + AT_rich Low_complexity Low_complexity 1 28 0 226 254 75 15 chr15 77928600 77928667 -23451854 - L2 LINE L2 0 3272 3202 2250 119 0 0 chr15 77928789 77929092 -23451429 - AluSx SINE Alu -9 303 1 289 296 191 13 chr15 77929149 77929301 -23451220 - MIR SINE MIR -24 238 60 458 201 153 88 chr15 77929417 77929850 -23450671 - MLT1J LTR MaLR -2 509 5 217 335 173 43 chr15 77929912 77930449 -23450072 - L2 LINE L2 -491 2823 2217 609 287 126 29 chr15 77931423 77931876 -23448645 - L1ME4a LINE L1 -104 6017 5521 190 378 64 26 chr15 77931929 77932085 -23448436 - L2 LINE L2 -21 3251 3090 * 491 294 96 18 chr15 77932068 77932286 -23448235 + MIR SINE MIR 13 247 -15 599 286 59 75 chr15 77932863 77932955 -23447566 - L1ME4a LINE L1 -837 5309 5217 2410 78 0 0 chr15 77932955 77933249 -23447272 - AluY SINE Alu -17 294 1 599 286 59 75 chr15 77933249 77933518 -23447003 - L1ME4a LINE L1 -929 5217 4945 2205 116 0 0 chr15 77933518 77933821 -23446700 - AluSx SINE Alu -9 303 1 599 286 59 75 chr15 77933821 77934408 -23446113 - L1ME4a LINE L1 -1201 4945 4375 481 268 120 0 chr15 77934777 77934919 -23445602 - MIR3 SINE MIR -16 192 34 2381 81 14 3 chr15 77935321 77935618 -23444903 - AluSg SINE Alu -10 300 1 2446 70 0 10 chr15 77936058 77936359 -23444162 + AluSq SINE Alu 1 298 -15 186 43 0 0 chr15 77936553 77936576 -23443945 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1572 156 24 24 chr15 77936577 77936866 -23443655 - L1MB2 LINE L1 -9 6162 5874 5842 131 12 2 chr15 77936952 77937841 -23442680 + L1PA15 LINE L1 5264 6161 -4 201 198 0 0 chr15 77937851 77937901 -23442620 - MIR SINE MIR -52 156 106 869 230 120 15 chr15 77938202 77938402 -23442119 - MER58A DNA MER1_type -1 223 3 180 77 0 0 chr15 77938486 77938512 -23442009 + (ATGGTG)n Simple_repeat Simple_repeat 5 30 0 323 290 20 10 chr15 77938802 77938902 -23441619 + LTR33 LTR ERVL 3 103 -418 333 218 200 58 chr15 77938954 77939179 -23441342 + LTR33 LTR ERVL 258 514 -7 290 254 28 11 chr15 77939296 77939432 -23441089 + MIR SINE MIR 33 233 -29 324 314 88 19 chr15 77939865 77940024 -23440497 - MIR SINE MIR -91 171 2 335 262 28 19 chr15 77941384 77941491 -23439030 - MIR SINE MIR -152 110 3 332 242 44 0 chr15 77941625 77941716 -23438805 + MIR SINE MIR 69 163 -99 202 351 0 0 chr15 77941751 77941825 -23438696 + L2 LINE L2 3187 3260 -12 252 304 55 55 chr15 77942594 77942761 -23437760 + L2 LINE L2 1852 2021 -1293 1035 215 23 5 chr15 77942761 77942975 -23437546 + MER58A DNA MER1_type 3 220 -4 252 304 55 55 chr15 77942975 77943044 -23437477 + L2 LINE L2 2020 2088 -1226 307 175 25 62 chr15 77943256 77943336 -23437185 - MIR SINE MIR -117 145 69 31 0 0 0 chr15 77944334 77944365 -23436156 + AT_rich Low_complexity Low_complexity 1 31 0 5025 165 12 18 chr15 77944835 77945662 -23434859 - L1MB1 LINE L1 0 6168 5345 2259 74 50 0 chr15 77945662 77945945 -23434576 - AluY SINE Alu -10 301 5 5025 165 12 18 chr15 77945945 77946016 -23434505 - L1MB1 LINE L1 -823 5345 5275 241 292 92 42 chr15 77947559 77947679 -23432842 - MER5A DNA MER1_type -3 186 61 539 307 79 56 chr15 77948911 77949608 -23430913 + L2 LINE L2 2443 3165 -107 22 35 0 0 chr15 77951548 77951577 -23428944 + AT_rich Low_complexity Low_complexity 1 29 0 4186 236 118 86 chr15 77951714 77952025 -23428496 - Charlie7 DNA MER1_type -293 2319 2019 555 105 0 35 chr15 77952025 77952144 -23428377 + FRAM SINE Alu 73 176 0 4186 236 118 86 chr15 77952144 77952529 -23427992 - Charlie7 DNA MER1_type -593 2019 1648 2140 97 0 40 chr15 77952529 77952829 -23427692 - AluSg SINE Alu -22 288 1 4186 236 118 86 chr15 77952829 77953068 -23427453 - Charlie7 DNA MER1_type -964 1648 1418 548 33 83 0 chr15 77953068 77953188 -23427333 + (TA)n Simple_repeat Simple_repeat 2 131 0 1890 156 0 0 chr15 77953191 77953473 -23427048 - AluSx SINE Alu -30 282 1 4186 236 118 86 chr15 77953473 77954262 -23426259 - Charlie7 DNA MER1_type -1195 1417 655 1477 136 13 8 chr15 77954262 77954497 -23426024 - MER46A DNA MER2_type 0 236 1 4186 236 118 86 chr15 77954497 77954538 -23425983 - Charlie7 DNA MER1_type -1957 655 617 2137 96 3 27 chr15 77954538 77954839 -23425682 - AluY SINE Alu -7 304 11 4186 236 118 86 chr15 77954839 77955182 -23425339 - Charlie7 DNA MER1_type -1995 617 48 2350 109 3 0 chr15 77955655 77955967 -23424554 - AluSp SINE Alu 0 313 1 402 57 0 0 chr15 77956724 77956777 -23423744 + (CA)n Simple_repeat Simple_repeat 1 53 0 341 119 12 107 chr15 77957001 77957085 -23423436 - MER5A DNA MER1_type -86 103 28 909 177 43 48 chr15 77957121 77957330 -23423191 - MER3 DNA MER1_type -1 208 1 320 276 20 20 chr15 77957370 77957468 -23423053 + MER5A DNA MER1_type 91 188 -1 1319 161 29 0 chr15 77957662 77957867 -23422654 + AluJb SINE Alu 86 296 -16 532 290 54 47 chr15 77959334 77959613 -23420908 + LTR16C LTR ERVL 211 491 0 1331 244 57 27 chr15 77960018 77960451 -23420070 + LTR16A LTR ERVL 6 450 0 281 203 139 0 chr15 77961583 77961662 -23418859 - MIR SINE MIR -56 206 117 319 329 7 14 chr15 77962400 77962540 -23417981 + CT-rich Low_complexity Low_complexity 3 141 0 275 224 122 39 chr15 77963366 77963522 -23416999 - MIR SINE MIR -73 189 21 583 217 160 6 chr15 77963689 77963864 -23416657 + MIR SINE MIR 49 250 -12 240 262 6 65 chr15 77964104 77964203 -23416318 + MIR SINE MIR 63 146 -62 230 338 36 43 chr15 77964211 77964350 -23416171 + MER5A DNA MER1_type 13 150 -39 193 244 0 0 chr15 77964362 77964403 -23416118 - MER5B DNA MER1_type -59 119 79 894 242 47 83 chr15 77964456 77965110 -23415411 - L1MCc LINE L1 -4790 2151 1337 1985 107 3 45 chr15 77965110 77965418 -23415103 - AluSc SINE Alu -14 295 1 894 242 47 83 chr15 77965418 77965474 -23415047 - L1MCc LINE L1 -5604 1337 1281 205 286 0 18 chr15 77966166 77966222 -23414299 + MER5A DNA MER1_type 59 113 -76 238 327 11 17 chr15 77966905 77967008 -23413513 + CT-rich Low_complexity Low_complexity 2 179 0 528 259 101 65 chr15 77967248 77967782 -23412739 + L1ME4a LINE L1 5284 5861 -260 23 0 0 0 chr15 77967787 77967810 -23412711 + AT_rich Low_complexity Low_complexity 1 23 0 272 271 31 42 chr15 77967992 77968088 -23412433 + MIR SINE MIR 46 140 -68 226 281 16 47 chr15 77969790 77969918 -23410603 - MIR SINE MIR -116 146 23 1820 205 212 29 chr15 77970095 77970652 -23409869 - MLT2F LTR ERVL 0 663 5 1205 246 88 47 chr15 77970657 77971130 -23409391 - ERVL-F LTR ERVL -9 5755 5219 448 194 17 25 chr15 77971134 77971313 -23409208 - MER58A DNA MER1_type 0 224 1 1685 252 15 5 chr15 77971319 77971724 -23408797 - ERVL-F LTR ERVL -548 5216 4808 1232 312 114 15 chr15 77971787 77972577 -23407944 - L2 LINE L2 -1 3271 2295 4241 152 35 3 chr15 77972577 77973316 -23407205 - L1MB3 LINE L1 -2 6181 5419 1232 312 114 15 chr15 77973316 77973712 -23406809 - L2 LINE L2 -977 2295 1940 742 258 61 91 chr15 77974083 77974610 -23405911 - MLT1J LTR MaLR 0 511 1 2116 97 57 0 chr15 77974670 77974949 -23405572 + AluSx SINE Alu 8 302 -10 2362 73 0 13 chr15 77974949 77975249 -23405272 + AluY SINE Alu 1 296 -15 500 168 53 0 chr15 77975889 77975984 -23404537 + U6 snRNA snRNA 2 101 -6 185 205 0 0 chr15 77976596 77976635 -23403886 + L2 LINE L2 3008 3046 -226 277 367 0 8 chr15 77976763 77976883 -23403638 + L2 LINE L2 3134 3252 -20 269 240 108 70 chr15 77976898 77977027 -23403494 - MIR SINE MIR -90 172 39 213 210 16 32 chr15 77978006 77978068 -23402453 - L2 LINE L2 -6 3266 3206 435 118 0 0 chr15 77978746 77978822 -23401699 + (CA)n Simple_repeat Simple_repeat 1 76 0 207 213 131 0 chr15 77979424 77979485 -23401036 + MIR SINE MIR 121 189 -73 261 0 0 0 chr15 77979634 77979663 -23400858 + (CA)n Simple_repeat Simple_repeat 1 29 0 631 311 87 39 chr15 77980369 77980880 -23399641 + L2 LINE L2 2708 3241 -31 726 238 119 25 chr15 77981227 77981462 -23399059 + LTR16C LTR ERVL 235 491 0 307 297 25 34 chr15 77981530 77981648 -23398873 - MIR SINE MIR -54 208 92 306 0 0 0 chr15 77982196 77982230 -23398291 + (TG)n Simple_repeat Simple_repeat 2 35 0 3030 198 150 10 chr15 77983190 77984067 -23396454 - L1ME1 LINE L1 -9 6157 5175 2394 99 0 7 chr15 77984119 77984422 -23396099 + AluSx SINE Alu 1 301 -11 494 168 17 50 chr15 77984429 77984548 -23395973 - L1MC4 LINE L1 -14 8028 7914 229 263 40 40 chr15 77984958 77985057 -23395464 + MARNA DNA Mariner 157 255 -331 224 208 0 21 chr15 77985265 77985313 -23395208 + CT-rich Low_complexity Low_complexity 2 48 0 2373 192 51 20 chr15 77985388 77985575 -23394946 + MLT1D LTR MaLR 1 181 -324 2000 143 3 16 chr15 77985575 77985882 -23394639 + AluSx SINE Alu 1 303 -9 2373 192 51 20 chr15 77985882 77986184 -23394337 + MLT1D LTR MaLR 181 505 0 316 292 71 19 chr15 77986428 77986582 -23393939 + MARNA DNA Mariner 261 422 -164 21 0 0 0 chr15 77986660 77986681 -23393840 + AT_rich Low_complexity Low_complexity 1 21 0 350 234 53 0 chr15 77986739 77986833 -23393688 + MIR SINE MIR 110 208 -54 541 278 0 8 chr15 77987194 77987327 -23393194 + L2 LINE L2 3180 3311 -2 391 283 61 20 chr15 77987383 77987581 -23392940 - L2 LINE L2 -1325 1989 1784 224 349 62 7 chr15 77988191 77988337 -23392184 - L3 LINE CR1 -31 1546 1393 679 301 127 10 chr15 77988575 77988874 -23391647 - LTR16B LTR ERVL -128 336 3 377 261 14 116 chr15 77989178 77989298 -23391223 - MIR SINE MIR -45 217 125 2074 111 28 3 chr15 77989298 77989587 -23390934 + AluSc SINE Alu 1 296 -13 377 261 14 116 chr15 77989587 77989673 -23390848 - MIR SINE MIR -137 125 32 2678 93 27 0 chr15 77990386 77990761 -23389760 + L1PA11 LINE L1 5784 6168 -6 879 143 14 29 chr15 77991342 77991482 -23389039 - AluJo SINE Alu -174 138 1 1656 149 47 30 chr15 77991641 77991937 -23388584 + AluJo SINE Alu 1 301 -11 198 0 0 0 chr15 77992153 77992175 -23388346 + (TG)n Simple_repeat Simple_repeat 1 22 0 364 123 27 0 chr15 77992175 77992248 -23388273 + GA-rich Low_complexity Low_complexity 2 76 0 453 211 153 3 chr15 77992647 77992790 -23387731 + L1MB7 LINE L1 4588 4748 -1398 906 141 7 15 chr15 77992790 77992925 -23387596 + AluJo SINE Alu 1 134 -178 4199 179 56 13 chr15 77992934 77993319 -23387202 + L1MB7 LINE L1 4735 5102 -1082 2315 96 10 13 chr15 77993319 77993633 -23386888 + AluSq SINE Alu 1 313 0 4199 179 56 13 chr15 77993633 77993848 -23386673 + L1MB7 LINE L1 5102 5306 -878 1875 145 47 0 chr15 77993848 77994144 -23386377 + AluSq SINE Alu 1 310 -3 4199 179 56 13 chr15 77994144 77994917 -23385604 + L1MB7 LINE L1 5306 6172 -12 29 0 0 0 chr15 77995331 77995360 -23385161 + AT_rich Low_complexity Low_complexity 1 29 0 1220 157 4 29 chr15 77996450 77996692 -23383829 - L1PA15 LINE L1 0 6165 5930 2295 110 7 7 chr15 77997162 77997470 -23383051 - AluSc SINE Alu -1 308 1 491 211 32 0 chr15 77997725 77997820 -23382701 - MER96 DNA MER1_type? -77 98 1 242 161 18 36 chr15 77997990 77998046 -23382475 - L2 LINE L2 -223 3049 2995 220 363 0 0 chr15 77998106 77998186 -23382335 + MIR SINE MIR 64 143 -65 831 247 5 10 chr15 77998427 77998621 -23381900 - AluJo SINE Alu 0 312 120 722 203 0 0 chr15 77998640 77998763 -23381758 + FLAM_A SINE Alu 1 123 -10 639 272 63 13 chr15 77998906 77999145 -23381376 - L1MC4a LINE L1 -1934 5874 5624 531 209 9 0 chr15 77999563 77999668 -23380853 + L2 LINE L2 1365 1470 -1844 353 248 8 64 chr15 77999671 77999730 -23380791 - L1MC4a LINE L1 -2245 3901 3851 2177 126 0 3 chr15 77999730 78000031 -23380490 - AluSx SINE Alu -12 300 1 353 248 8 64 chr15 78000031 78000096 -23380425 - L1MC4a LINE L1 -2295 3851 3784 28 0 0 0 chr15 78000118 78000146 -23380375 + AT_rich Low_complexity Low_complexity 1 28 0 1942 154 7 0 chr15 78000146 78000463 -23380058 + AluJb SINE Alu 1 312 0 465 302 54 14 chr15 78000468 78000690 -23379831 - L1MA9 LINE L1 -38 6274 6044 476 289 123 46 chr15 78000810 78001915 -23378606 - L1MC4a LINE L1 -2580 3566 2377 26 30 0 0 chr15 78001976 78002009 -23378512 + AT_rich Low_complexity Low_complexity 1 33 0 3213 129 39 34 chr15 78002583 78002629 -23377892 - L1MB3 LINE L1 -1 6182 6138 1714 146 24 20 chr15 78002629 78002923 -23377598 - AluJo SINE Alu -16 296 2 3213 129 39 34 chr15 78002923 78003454 -23377067 - L1MB3 LINE L1 -45 6138 5599 2078 141 0 0 chr15 78003454 78003751 -23376770 - AluSq SINE Alu -16 297 1 857 53 106 0 chr15 78003760 78003873 -23376648 - AluYa5 SINE Alu -186 125 1 606 336 47 58 chr15 78004109 78004472 -23376049 + L2 LINE L2 2913 3271 -1 194 174 22 0 chr15 78004485 78004531 -23375990 + GA-rich Low_complexity Low_complexity 1 47 0 225 0 0 0 chr15 78004533 78004558 -23375963 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2550 197 13 15 chr15 78004788 78005261 -23375260 + MER70A LTR ERVL 1 472 0 23378 173 19 14 chr15 78005472 78007729 -23372792 - L1PA12 LINE L1 0 7606 5361 2295 112 0 0 chr15 78007729 78008024 -23372497 - AluSq SINE Alu -18 295 1 23378 173 19 14 chr15 78008024 78012527 -23367994 - L1PA12 LINE L1 -2245 5361 4 283 79 37 9 chr15 78012560 78012631 -23367890 + L1MA4A LINE L1 6222 6298 -5 1589 195 7 20 chr15 78012805 78013102 -23367419 + AluJb SINE Alu 1 293 -19 949 192 111 5 chr15 78013426 78013624 -23366897 + MER20 DNA MER1_type 1 219 0 2126 109 102 61 chr15 78014431 78014842 -23365679 + MSTA LTR MaLR 1 428 0 331 268 10 21 chr15 78015973 78016070 -23364451 + LTR33 LTR ERVL 426 521 0 1953 177 82 15 chr15 78016099 78016500 -23364021 + MSTA LTR MaLR 1 428 0 290 340 50 0 chr15 78016550 78016650 -23363871 + L2 LINE L2 3104 3208 -64 385 262 156 0 chr15 78016895 78017036 -23363485 + MIR SINE MIR 94 256 -6 1326 199 85 11 chr15 78017417 78017688 -23362833 - AluJb SINE Alu -21 291 1 246 339 32 0 chr15 78020448 78020572 -23359949 + L2 LINE L2 3178 3305 -8 1022 169 99 73 chr15 78020789 78021102 -23359419 + MER33 DNA MER1_type 4 324 0 342 308 26 17 chr15 78022132 78022249 -23358272 + LTR67 LTR ERVL 132 249 -308 541 254 16 90 chr15 78022377 78022633 -23357888 + L2 LINE L2 3077 3313 0 947 139 133 6 chr15 78022859 78023039 -23357482 + MER20 DNA MER1_type 17 219 0 259 310 52 35 chr15 78023097 78023271 -23357250 + MIR SINE MIR 29 205 -57 281 308 116 20 chr15 78023941 78024139 -23356382 - L2 LINE L2 -222 3050 2834 315 177 305 43 chr15 78024144 78024285 -23356236 + MER5B DNA MER1_type 1 178 0 360 317 49 0 chr15 78024392 78024556 -23355965 + MIR SINE MIR 50 221 -41 993 264 72 12 chr15 78025366 78025767 -23354754 + L1MCc LINE L1 24 448 -5975 1659 275 62 26 chr15 78025966 78026823 -23353698 + L1MCc LINE L1 813 1715 -4887 630 306 24 5 chr15 78026874 78027080 -23353441 - MER63A DNA MER1_type 0 210 1 235 290 0 54 chr15 78028048 78028141 -23352380 + MLT1J LTR MaLR 231 318 -193 194 0 39 0 chr15 78028258 78028284 -23352237 + (TC)n Simple_repeat Simple_repeat 2 28 0 701 158 8 0 chr15 78028297 78028417 -23352104 - FLAM_A SINE Alu -11 122 2 362 276 135 12 chr15 78028668 78028838 -23351683 - MLT1L LTR MaLR -235 380 190 367 187 67 13 chr15 78028870 78028945 -23351576 - MLT1L LTR MaLR -536 79 1 8350 75 7 8 chr15 78029454 78030527 -23349994 + MER11C LTR ERVK 1 1071 0 243 88 0 0 chr15 78030946 78030980 -23349541 + (CAA)n Simple_repeat Simple_repeat 1 34 0 708 283 64 19 chr15 78031086 78031351 -23349170 - MLT1J1 LTR MaLR -107 339 63 2301 98 3 0 chr15 78031618 78031915 -23348606 + AluY SINE Alu 1 298 -13 2244 116 26 0 chr15 78032396 78032698 -23347823 - AluSx SINE Alu -2 310 1 704 208 0 8 chr15 78032870 78033000 -23347521 + FLAM_A SINE Alu 1 129 -4 1661 168 45 11 chr15 78033025 78033311 -23347210 + AluSx SINE Alu 16 311 -1 302 313 35 26 chr15 78033314 78033429 -23347092 - MER5B DNA MER1_type -59 119 4 2001 86 0 8 chr15 78035336 78035591 -23344930 + AluSp SINE Alu 1 253 -60 1496 135 106 53 chr15 78036044 78036326 -23344195 + AluJb SINE Alu 1 297 -15 429 228 159 28 chr15 78036354 78036499 -23344022 - L1ME3A LINE L1 -60 6110 5947 294 220 130 30 chr15 78036733 78036833 -23343688 - MIR SINE MIR -4 258 149 819 108 9 0 chr15 78037230 78037341 -23343180 - FLAM_C SINE Alu -20 123 12 896 139 0 22 chr15 78037873 78038010 -23342511 + AluJo SINE Alu 1 134 -178 276 194 146 29 chr15 78038390 78038493 -23342028 + MIR SINE MIR 61 175 -87 215 30 0 30 chr15 78038518 78038551 -23341970 + (CAAAAA)n Simple_repeat Simple_repeat 1 32 0 2254 114 0 0 chr15 78039189 78039478 -23341043 - AluSx SINE Alu -23 289 1 1694 157 0 56 chr15 78039667 78039972 -23340549 + AluJb SINE Alu 1 288 -24 2079 111 9 35 chr15 78040577 78040892 -23339629 - AluSx SINE Alu -5 307 1 43425 35 23 2 chr15 78041156 78047182 -23333339 + L1PA3 LINE L1 2 6155 0 647 14 0 14 chr15 78047543 78047616 -23332905 - tRNA-Cys-TGC tRNA tRNA -3 72 1 1791 109 49 19 chr15 78047801 78048067 -23332454 + AluSx SINE Alu 1 274 -38 330 45 0 0 chr15 78048069 78048113 -23332408 + (TC)n Simple_repeat Simple_repeat 1 44 0 557 156 6 38 chr15 78048114 78048274 -23332247 + (TA)n Simple_repeat Simple_repeat 2 156 0 707 128 0 135 chr15 78048285 78048433 -23332088 - AluJb SINE Alu -183 129 2 1693 166 3 34 chr15 78049623 78049918 -23330603 + AluJb SINE Alu 13 298 -14 279 381 65 0 chr15 78050659 78050827 -23329694 + L2 LINE L2 2513 2691 -623 266 316 90 15 chr15 78051158 78051291 -23329230 + MIR SINE MIR 72 214 -48 431 297 124 77 chr15 78051440 78051804 -23328717 - MLT1L LTR MaLR -199 416 36 187 361 12 12 chr15 78051826 78051909 -23328612 + L2 LINE L2 2894 2976 -338 431 258 82 11 chr15 78051909 78052091 -23328430 - L1ME4a LINE L1 -208 5913 5719 446 278 73 34 chr15 78052123 78052318 -23328203 - MIR SINE MIR -44 218 20 307 306 52 86 chr15 78052540 78052922 -23327599 + LTR16C LTR ERVL 123 491 0 195 348 193 22 chr15 78054732 78054867 -23325654 + MIR3 SINE MIR 2 159 -49 405 310 42 0 chr15 78054910 78055052 -23325469 - MER117 DNA MER1_type -42 155 8 2045 216 94 44 chr15 78055196 78055801 -23324720 - MLT1E2 LTR MaLR 0 626 5 186 265 0 0 chr15 78055961 78055995 -23324526 - L2 LINE L2 -95 3177 3144 205 339 68 25 chr15 78056167 78056285 -23324236 + MIR3 SINE MIR 64 186 -22 322 196 0 0 chr15 78056794 78056850 -23323671 - MLT1L LTR MaLR -427 188 133 2230 104 0 16 chr15 78058295 78058603 -23321918 - AluSq SINE Alu -10 303 1 5063 104 20 24 chr15 78058664 78059413 -23321108 - L1PA14 LINE L1 0 6161 5416 681 97 0 32 chr15 78060462 78060586 -23319935 + (TTCC)n Simple_repeat Simple_repeat 1 120 0 701 193 15 15 chr15 78060586 78060602 -23319919 - FLAM_C SINE Alu -177 135 120 234 0 0 0 chr15 78060602 78060628 -23319893 + (TTCTC)n Simple_repeat Simple_repeat 5 30 0 701 193 15 15 chr15 78060628 78060746 -23319775 - FLAM_C SINE Alu -191 121 1 501 314 50 27 chr15 78060796 78061016 -23319505 - MLT1I LTR MaLR 0 409 185 2222 227 76 40 chr15 78061068 78061705 -23318816 - L1ME3 LINE L1 -8 6154 5470 2221 86 0 0 chr15 78061705 78061984 -23318537 + AluY SINE Alu 29 307 -4 2222 227 76 40 chr15 78061984 78062111 -23318410 - L1ME3 LINE L1 -692 5470 5349 480 189 206 11 chr15 78063640 78063785 -23316736 - MER5A DNA MER1_type -6 183 5 307 330 0 10 chr15 78063990 78064087 -23316434 + MIR SINE MIR 20 115 -147 598 252 29 58 chr15 78064138 78064344 -23316177 + L1MC4 LINE L1 7378 7577 -465 5985 127 22 8 chr15 78064344 78065686 -23314835 + L1PA16 LINE L1 4801 6157 -9 185 200 36 0 chr15 78065736 78065791 -23314730 + (CATA)n Simple_repeat Simple_repeat 3 59 0 311 326 75 77 chr15 78066090 78066479 -23314042 + L2 LINE L2 1782 2169 -1145 244 186 0 0 chr15 78066516 78066559 -23313962 - MLT1K LTR MaLR -6 582 540 3583 144 25 0 chr15 78066573 78067130 -23313391 - L1MB2 LINE L1 -2 6169 5599 371 338 54 33 chr15 78067175 78067415 -23313106 - MLT1K LTR MaLR -62 526 282 438 301 45 0 chr15 78067447 78067603 -23312918 + MLT1L LTR MaLR 403 565 -50 235 215 89 63 chr15 78067846 78067925 -23312596 + MLT1J LTR MaLR 238 318 -193 2731 186 6 4 chr15 78068177 78068644 -23311877 + MER66B LTR ERV1 19 486 0 3251 231 45 5 chr15 78068758 78069528 -23310993 - L1MC4 LINE L1 -782 7260 6460 25 0 0 0 chr15 78069801 78069826 -23310695 + AT_rich Low_complexity Low_complexity 1 25 0 535 258 40 40 chr15 78069855 78070080 -23310441 - MLT1K LTR MaLR 0 588 364 248 301 67 112 chr15 78070277 78070768 -23309753 + L2 LINE L2 2181 2649 -665 191 284 81 0 chr15 78071179 78071253 -23309268 - MIR SINE MIR -66 196 117 241 288 68 34 chr15 78072805 78072923 -23307598 + L2 LINE L2 3129 3250 -63 192 77 0 0 chr15 78072984 78073010 -23307511 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 474 274 154 11 chr15 78073218 78073393 -23307128 - MIR SINE MIR -30 232 33 297 165 63 25 chr15 78073643 78073722 -23306799 - MIR3 SINE MIR -8 200 119 528 100 11 33 chr15 78074039 78074129 -23306392 + MER53 DNA DNA 101 188 -1 517 279 147 22 chr15 78074203 78074513 -23306008 + MLT1I LTR MaLR 1 349 -60 984 213 76 0 chr15 78074513 78074710 -23305811 + MER58A DNA MER1_type 1 212 -12 348 274 121 0 chr15 78074822 78074946 -23305575 - L1ME LINE L1 -673 5448 5310 25 0 0 0 chr15 78075106 78075131 -23305390 + AT_rich Low_complexity Low_complexity 1 25 0 681 226 0 0 chr15 78075324 78075439 -23305082 - FLAM_A SINE Alu -17 116 2 288 191 54 54 chr15 78075503 78075650 -23304871 + L1ME4a LINE L1 5852 5998 -123 693 47 16 31 chr15 78075651 78075778 -23304743 + (TA)n Simple_repeat Simple_repeat 2 126 0 8053 27 0 8 chr15 78075778 78076613 -23303908 - L1PA5 LINE L1 -15 6139 5310 2514 73 0 6 chr15 78076613 78076926 -23303595 - AluY SINE Alu 0 311 1 8053 27 0 8 chr15 78076926 78077325 -23303196 - L1PA5 LINE L1 -844 5310 4909 334 0 43 0 chr15 78077345 78077391 -23303130 + (TTA)n Simple_repeat Simple_repeat 3 50 0 8087 26 25 0 chr15 78077391 78078361 -23302160 - L1PA3 LINE L1 -18 6137 5162 23908 38 2 0 chr15 78078378 78081258 -23299263 - L1PA3 LINE L1 -1230 4916 2033 265 182 0 0 chr15 78081743 78081787 -23298734 + Charlie3 DNA MER1_type 2658 2701 -9 404 300 18 117 chr15 78082314 78082587 -23297934 - MIR SINE MIR -14 248 3 13329 152 35 40 chr15 78082947 78086659 -23293862 + L1MA4 LINE L1 2588 6300 0 27 49 0 0 chr15 78086659 78086700 -23293821 + AT_rich Low_complexity Low_complexity 1 41 0 320 340 109 0 chr15 78086850 78086989 -23293532 + MIR SINE MIR 45 197 -62 608 237 109 94 chr15 78087043 78087393 -23293128 - MLT1H LTR MaLR -79 470 116 441 264 81 40 chr15 78088572 78088746 -23291775 + L2 LINE L2 3133 3313 0 246 331 59 44 chr15 78089883 78090155 -23290366 + MARNA DNA Mariner 265 540 -46 733 193 187 0 chr15 78090381 78090531 -23289990 + MER5B DNA MER1_type 1 178 0 22 35 0 0 chr15 78090611 78090640 -23289881 + AT_rich Low_complexity Low_complexity 1 29 0 4849 133 17 18 chr15 78090641 78091422 -23289099 - L1MA8 LINE L1 -12 6279 5500 524 139 7 13 chr15 78091338 78091433 -23289088 - L1MC/D LINE L1 -709 5582 5484 610 252 9 0 chr15 78091489 78091600 -23288921 + MER81 DNA DNA 3 114 0 265 250 150 50 chr15 78091972 78092092 -23288429 - MIR SINE MIR -45 217 86 23 33 0 0 chr15 78092755 78092785 -23287736 + AT_rich Low_complexity Low_complexity 1 30 0 2223 95 179 8 chr15 78092872 78093219 -23287302 + MLT2A1 LTR ERVL 1 420 -24 1013 80 0 12 chr15 78093219 78093382 -23287139 + (TCTA)n Simple_repeat Simple_repeat 3 163 0 2223 95 179 8 chr15 78093382 78093413 -23287108 + MLT2A1 LTR ERVL 420 444 0 1297 306 134 43 chr15 78093473 78093857 -23286664 - L2 LINE L2 0 3272 2924 228 111 0 0 chr15 78093857 78093893 -23286628 + (TG)n Simple_repeat Simple_repeat 2 37 0 1297 306 134 43 chr15 78093893 78095114 -23285407 - L2 LINE L2 -348 2924 1520 431 305 53 0 chr15 78095621 78095752 -23284769 - MIR SINE MIR -77 185 48 442 317 17 8 chr15 78096015 78096255 -23284266 + L1ME4a LINE L1 4909 5150 -996 357 281 16 23 chr15 78096253 78096381 -23284140 + L1ME4a LINE L1 5685 5811 -310 * 686 296 28 16 chr15 78096381 78096628 -23283893 + MIR SINE MIR 12 261 -1 243 259 57 82 chr15 78096686 78096844 -23283677 + L1ME4a LINE L1 5863 6016 -105 521 136 8 32 chr15 78096957 78097082 -23283439 + GA-rich Low_complexity Low_complexity 3 124 0 444 150 0 0 chr15 78097506 78097586 -23282935 + (TG)n Simple_repeat Simple_repeat 2 81 0 197 357 153 13 chr15 78097652 78097809 -23282712 + MIR3 SINE MIR 21 199 -9 238 386 31 0 chr15 78097888 78098015 -23282506 + L3 LINE CR1 981 1111 -466 250 304 150 22 chr15 78098153 78098426 -23282095 + L1MEd LINE L1 528 835 -5284 3015 80 61 14 chr15 78098469 78098893 -23281628 + MLT2A1 LTR ERVL 1 444 0 16787 67 3 6 chr15 78098893 78100618 -23279903 + HERVL-A1 LTR ERVL 1 1721 -3933 2449 78 0 3 chr15 78100618 78100925 -23279596 + AluY SINE Alu 1 306 -5 16787 67 3 6 chr15 78100925 78101281 -23279240 + HERVL-A1 LTR ERVL 1721 2076 -3578 3254 213 63 36 chr15 78101289 78102172 -23278349 - L1M4 LINE L1 -1243 4903 3997 * 4487 235 55 42 chr15 78102167 78103717 -23276804 - L1M4 LINE L1 -1722 4922 3353 860 223 23 51 chr15 78103738 78103994 -23276527 - L1M4 LINE L1 -6289 253 5 431 186 34 51 chr15 78103988 78104106 -23276415 - L1M LINE L1 -766 5400 5285 * 780 242 10 5 chr15 78104104 78104302 -23276219 - L1MD3 LINE L1 0 7995 7797 500 221 0 0 chr15 78104299 78104412 -23276109 - L1M4 LINE L1 -846 5300 5188 * 217 234 60 132 chr15 78105410 78105577 -23274944 + MIR3 SINE MIR 40 194 -14 5149 218 89 40 chr15 78105585 78106183 -23274338 - Charlie2a DNA MER1_type -1 2861 2294 7367 133 30 36 chr15 78106183 78106390 -23274131 + Tigger3b DNA MER2_type 2 209 -2819 2140 125 0 7 chr15 78106390 78106686 -23273835 + AluSx SINE Alu 1 294 -18 7367 133 30 36 chr15 78106686 78107139 -23273382 + Tigger3b DNA MER2_type 209 663 -2365 2218 96 10 7 chr15 78107139 78107440 -23273081 + AluSx SINE Alu 1 302 -10 7367 133 30 36 chr15 78107440 78108016 -23272505 + Tigger3b DNA MER2_type 663 1231 0 5149 218 89 40 chr15 78108016 78109218 -23271303 - Charlie2a DNA MER1_type -568 2294 972 1448 246 123 3 chr15 78111026 78111607 -23268914 - Charlie2 DNA MER1_type -2182 600 1 1166 240 80 58 chr15 78111824 78112286 -23268235 + L2 LINE L2 2842 3313 0 261 171 0 49 chr15 78112425 78112507 -23268014 + CT-rich Low_complexity Low_complexity 2 79 0 834 156 44 0 chr15 78112710 78112845 -23267676 - FRAM SINE Alu -24 152 12 350 157 214 0 chr15 78112903 78112992 -23267529 + Charlie8 DNA MER1_type 128 235 -2182 226 262 0 0 chr15 78113100 78113142 -23267379 + Charlie8 DNA MER1_type 2376 2417 0 607 261 122 108 chr15 78113191 78113485 -23267036 + L2 LINE L2 2916 3217 -55 671 255 107 15 chr15 78113485 78113681 -23266840 + MER58C DNA MER1_type 1 214 -1 607 261 122 108 chr15 78113681 78113738 -23266783 + L2 LINE L2 3217 3272 0 267 156 62 62 chr15 78113915 78114075 -23266446 + (TTATA)n Simple_repeat Simple_repeat 4 163 0 1022 285 134 11 chr15 78114084 78114449 -23266072 + L2 LINE L2 2901 3310 -3 322 302 66 0 chr15 78115737 78115843 -23264678 - L2 LINE L2 -3 3269 3157 180 376 37 9 chr15 78116173 78116282 -23264239 - MER5A DNA MER1_type -35 154 43 928 232 91 134 chr15 78116701 78117275 -23263246 - MLT1H1 LTR MaLR 0 555 1 299 351 160 37 chr15 78117276 78117626 -23262895 - L2 LINE L2 -677 2637 2245 1031 198 77 21 chr15 78117681 78118008 -23262513 + MSTD LTR MaLR 1 396 0 373 288 56 0 chr15 78118019 78118144 -23262377 - MIR SINE MIR -113 149 18 26 0 0 0 chr15 78118764 78118790 -23261731 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr15 78119372 78119401 -23261120 + AT_rich Low_complexity Low_complexity 1 29 0 476 246 8 22 chr15 78120063 78120197 -23260324 + MIR SINE MIR 121 252 -10 356 249 13 96 chr15 78120561 78120790 -23259731 + HAL1b LINE L1 91 300 -1048 6251 74 2 8 chr15 78120843 78121664 -23258857 - L1PA13 LINE L1 -2 6161 5346 765 244 63 20 chr15 78121664 78121918 -23258603 + HAL1b LINE L1 346 610 -738 465 303 96 5 chr15 78122015 78122213 -23258308 + HAL1b LINE L1 434 649 -699 2639 10 3 0 chr15 78122334 78122626 -23257895 - AluYa5 SINE Alu -18 293 1 2115 120 11 0 chr15 78122865 78123149 -23257372 + AluSx SINE Alu 1 287 -25 4011 289 117 24 chr15 78125200 78127071 -23253450 + L2 LINE L2 444 2489 -825 1734 221 49 15 chr15 78127135 78127546 -23252975 + MLT1C LTR MaLR 34 458 -9 1039 284 100 23 chr15 78127609 78127908 -23252613 + L2 LINE L2 2617 2891 -422 2682 146 36 2 chr15 78127908 78128326 -23252195 + MSTB1 LTR MaLR 1 432 0 1039 284 100 23 chr15 78128326 78128546 -23251975 + L2 LINE L2 2891 3168 -145 722 220 65 9 chr15 78128622 78128854 -23251667 + HAL1b LINE L1 899 1143 -205 270 323 57 97 chr15 78129591 78130096 -23250425 - L2 LINE L2 -400 2914 2430 245 271 0 0 chr15 78131323 78131393 -23249128 - MIR SINE MIR -56 206 137 523 234 209 67 chr15 78131394 78131676 -23248845 + L1MC4a LINE L1 5607 5928 -1880 3091 145 46 15 chr15 78132654 78132957 -23247564 - MER34 LTR ERV1 0 542 215 2786 151 19 2 chr15 78132957 78133382 -23247139 + MSTB1 LTR MaLR 1 432 0 3091 145 46 15 chr15 78133382 78133601 -23246920 - MER34 LTR ERV1 -327 215 4 1578 205 92 5 chr15 78134255 78134676 -23245845 - MER89 LTR ERV1 0 559 1 446 199 41 64 chr15 78134676 78134844 -23245677 + MER104 DNA Tc2 14 177 -3 310 339 92 32 chr15 78135206 78135575 -23244946 - MLT1L LTR MaLR -33 582 192 252 256 219 15 chr15 78135997 78136134 -23244387 - MIR3 SINE MIR -25 183 19 524 303 22 6 chr15 78136388 78136566 -23243955 - Charlie8 DNA MER1_type -2153 264 84 1195 201 0 18 chr15 78138224 78138443 -23242078 + MER58A DNA MER1_type 1 215 -9 240 279 114 31 chr15 78138453 78138630 -23241891 + MIR SINE MIR 16 232 -30 10066 34 5 0 chr15 78139148 78141058 -23239463 + L1PA4 LINE L1 4238 6155 0 263 254 0 0 chr15 78141220 78141279 -23239242 + Charlie8 DNA MER1_type 3 61 -2356 459 0 0 0 chr15 78141999 78142050 -23238471 + (TG)n Simple_repeat Simple_repeat 1 51 0 1303 201 186 20 chr15 78142200 78142592 -23237929 - Charlie4a DNA MER1_type 0 508 52 10419 20 1 0 chr15 78142618 78143802 -23236719 - L1PA3 LINE L1 -1160 4986 3802 8206 19 1 2 chr15 78143802 78144976 -23235545 + L1PA3 LINE L1 4983 6155 0 250 274 164 59 chr15 78145742 78146990 -23233531 - L1M4 LINE L1 -2659 3487 2110 22 0 0 0 chr15 78147002 78147024 -23233497 + AT_rich Low_complexity Low_complexity 1 22 0 225 295 60 64 chr15 78147549 78147830 -23232691 - HAL1 LINE L1 -1009 1498 1219 474 226 59 31 chr15 78147855 78148032 -23232489 + MLT1H1 LTR MaLR 1 187 -393 21 0 0 0 chr15 78148159 78148180 -23232341 + AT_rich Low_complexity Low_complexity 1 21 0 204 125 0 0 chr15 78148378 78148410 -23232111 + (TTC)n Simple_repeat Simple_repeat 3 34 0 906 181 199 97 chr15 78148796 78149127 -23231394 - MSTD LTR MaLR 0 396 1 3075 105 13 59 chr15 78149273 78149750 -23230771 - L1PA15 LINE L1 -8 6157 5703 232 200 40 0 chr15 78150114 78150164 -23230357 + MER5B DNA MER1_type 125 176 -2 1210 264 19 6 chr15 78150245 78150559 -23229962 + MER58B DNA MER1_type 2 319 -22 340 234 13 13 chr15 78150953 78151030 -23229491 - HERVL40 LTR ERVL -2104 3426 3350 232 189 0 19 chr15 78151578 78151631 -23228890 + GA-rich Low_complexity Low_complexity 2 53 0 492 264 181 0 chr15 78152633 78152777 -23227744 - MER5A DNA MER1_type -6 183 14 408 322 190 19 chr15 78153726 78153847 -23226674 + MIR SINE MIR 13 112 -150 3701 87 0 4 chr15 78153847 78154308 -23226213 - LTR46 LTR ERV1 -1 459 1 408 322 190 19 chr15 78154308 78154397 -23226124 + MIR SINE MIR 112 259 -3 674 289 45 8 chr15 78154472 78154718 -23225803 - MLT1L LTR MaLR -4 611 357 212 345 127 0 chr15 78154919 78155029 -23225492 - MER5B DNA MER1_type -30 148 25 * 250 323 21 21 chr15 78154950 78155046 -23225475 + MER5A DNA MER1_type 86 181 -8 218 252 146 10 chr15 78156804 78156907 -23223614 + MIR SINE MIR 20 136 -72 2378 102 0 0 chr15 78157570 78157875 -23222646 - AluSx SINE Alu 0 312 8 795 245 72 102 chr15 78157935 78158462 -23222059 + MLT1J LTR MaLR 1 511 0 1491 303 140 15 chr15 78158833 78159229 -23221292 + L2 LINE L2 1940 2285 -987 4466 152 35 3 chr15 78159229 78159968 -23220553 + L1MB3 LINE L1 5419 6181 -2 1491 303 140 15 chr15 78159968 78160756 -23219765 + L2 LINE L2 2285 3271 -1 1676 252 15 5 chr15 78160819 78161224 -23219297 + ERVL-F LTR ERVL 4808 5216 -548 450 194 17 25 chr15 78161230 78161409 -23219112 + MER58A DNA MER1_type 1 224 0 1220 246 88 47 chr15 78161413 78161886 -23218635 + ERVL-F LTR ERVL 5219 5755 -9 1987 205 212 29 chr15 78161891 78162448 -23218073 + MLT2F LTR ERVL 5 663 0 283 242 31 62 chr15 78162625 78162753 -23217768 + MIR SINE MIR 23 146 -116 317 268 71 36 chr15 78164455 78164567 -23215954 - MIR SINE MIR -68 140 25 23 0 0 0 chr15 78164733 78164756 -23215765 + AT_rich Low_complexity Low_complexity 1 23 0 550 255 94 57 chr15 78164761 78165295 -23215226 - L1ME4a LINE L1 -260 5861 5284 238 327 11 17 chr15 78165535 78165638 -23214883 + GA-rich Low_complexity Low_complexity 2 179 0 257 319 102 25 chr15 78166256 78166413 -23214108 - MER5A DNA MER1_type 0 189 21 430 207 92 119 chr15 78167068 78167124 -23213397 + L1MCc LINE L1 1281 1337 -4637 1966 107 3 45 chr15 78167124 78167432 -23213089 + AluSc SINE Alu 1 295 -14 430 207 92 119 chr15 78167432 78167734 -23212787 + L1MCc LINE L1 1337 1811 -4163 200 146 24 24 chr15 78167907 78167948 -23212573 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 303 159 0 32 chr15 78167948 78168011 -23212510 - L1MC4 LINE L1 -1339 6703 6643 2411 77 0 6 chr15 78168258 78168569 -23211952 - AluY SINE Alu -2 309 1 1894 155 20 0 chr15 78169009 78169306 -23211215 + AluSg SINE Alu 1 303 -7 1070 197 55 18 chr15 78169435 78169653 -23210868 - AluJo SINE Alu -2 310 85 193 360 73 28 chr15 78169690 78169868 -23210653 - L2 LINE L2 -159 3113 2928 1098 208 58 46 chr15 78170009 78170190 -23210331 + Charlie1b DNA MER1_type 1 187 -2574 2200 96 0 7 chr15 78170190 78170482 -23210039 + AluSc SINE Alu 1 290 -19 1098 208 58 46 chr15 78170482 78170541 -23209980 + Charlie1b DNA MER1_type 187 244 -279 381 281 50 14 chr15 78170764 78170902 -23209619 + MLT1H LTR MaLR 5 172 -377 456 171 178 16 chr15 78171016 78171145 -23209376 + MLT1H LTR MaLR 398 547 -2 1138 134 45 63 chr15 78171203 78171246 -23209275 - MER20 DNA MER1_type 0 219 177 2269 43 6 77 chr15 78171246 78171569 -23208952 - AluY SINE Alu -11 300 1 1138 134 45 63 chr15 78171569 78171748 -23208773 - MER20 DNA MER1_type -42 177 1 194 283 38 0 chr15 78171768 78171821 -23208700 + MER5A DNA MER1_type 34 88 -101 * 361 257 79 21 chr15 78171775 78171915 -23208606 - MER5B DNA MER1_type -29 149 2 346 317 112 24 chr15 78171937 78172186 -23208335 - L2 LINE L2 -583 2731 2461 2393 94 0 0 chr15 78172197 78172506 -23208015 + AluSc SINE Alu 1 309 0 3768 157 17 6 chr15 78172506 78173016 -23207505 + L1MB8 LINE L1 5156 5677 -501 1690 173 21 10 chr15 78173016 78173305 -23207216 + AluJo SINE Alu 1 292 -20 3768 157 17 6 chr15 78173305 78173576 -23206945 + L1MB8 LINE L1 5677 5944 -234 436 219 0 0 chr15 78173576 78173649 -23206872 + FRAM/FAM SINE Alu 1 66 -110 828 107 11 183 chr15 78173658 78173751 -23206770 + L1MB8 LINE L1 5953 6060 -118 2120 127 0 3 chr15 78173751 78174058 -23206463 - AluSx SINE Alu -6 306 1 828 107 11 183 chr15 78174058 78174163 -23206358 + L1MB8 LINE L1 6060 6098 -80 1523 159 141 11 chr15 78174163 78174446 -23206075 - 7SLRNA srpRNA srpRNA 0 320 1 828 107 11 183 chr15 78174446 78174508 -23206013 + L1MB8 LINE L1 6098 6169 -9 316 316 216 0 chr15 78174511 78174682 -23205839 - L2 LINE L2 -864 2450 2243 234 244 0 0 chr15 78174693 78174734 -23205787 - L2 LINE L2 -13 3259 3219 287 211 149 26 chr15 78174799 78174913 -23205608 + L2 LINE L2 3182 3309 -4 227 214 405 0 chr15 78174925 78175014 -23205507 - MIR SINE MIR -71 191 67 216 270 0 14 chr15 78175262 78175336 -23205185 - MIR SINE MIR -50 212 140 * 294 176 206 0 chr15 78175326 78175394 -23205127 + L2 LINE L2 1839 1920 -1394 726 130 62 34 chr15 78175401 78175547 -23204974 + MER96B DNA MER1_type? 29 178 -239 2242 66 7 3 chr15 78177157 78177443 -23203078 + AluSc SINE Alu 1 287 -22 412 224 86 0 chr15 78177764 78177880 -23202641 + L1MA10 LINE L1 6207 6332 -2 347 320 131 15 chr15 78178144 78178350 -23202171 - L1ME3A LINE L1 -330 5840 5611 21 0 0 0 chr15 78179210 78179231 -23201290 + AT_rich Low_complexity Low_complexity 1 21 0 240 289 33 11 chr15 78179550 78179640 -23200881 + L2 LINE L2 2708 2799 -515 1191 128 113 60 chr15 78179685 78179903 -23200618 - MER33 DNA MER1_type -2283 302 64 2077 139 0 16 chr15 78179903 78180074 -23200447 - AluSx SINE Alu -8 304 139 2118 110 31 7 chr15 78180074 78180366 -23200155 - AluSx SINE Alu -13 299 1 2077 139 0 16 chr15 78180366 78180503 -23200018 - AluSx SINE Alu -173 139 1 1191 128 113 60 chr15 78180503 78180566 -23199955 - MER33 DNA MER1_type -2521 64 6 263 255 58 96 chr15 78180678 78180886 -23199635 - L1ME LINE L1 -451 5670 5471 258 207 0 0 chr15 78181087 78181145 -23199376 + (CA)n Simple_repeat Simple_repeat 2 59 0 1591 187 32 0 chr15 78181168 78181446 -23199075 - AluJb SINE Alu -24 288 2 180 0 0 0 chr15 78181518 78181538 -23198983 + (T)n Simple_repeat Simple_repeat 1 20 0 339 314 30 59 chr15 78181976 78182053 -23198468 - L1M4 LINE L1 -2990 3156 3078 2203 130 3 0 chr15 78182053 78182360 -23198161 - AluSx SINE Alu -4 308 1 339 314 30 59 chr15 78182360 78182518 -23198003 - L1M4 LINE L1 -3068 3078 2928 792 120 0 0 chr15 78182649 78182749 -23197772 - AluS SINE Alu -211 101 2 381 175 0 0 chr15 78182750 78182813 -23197708 - MER33 DNA MER1_type -256 68 6 310 196 52 52 chr15 78182925 78183022 -23197499 - L1ME LINE L1 -451 5670 5574 22 35 0 0 chr15 78183035 78183064 -23197457 + AT_rich Low_complexity Low_complexity 1 29 0 514 260 236 8 chr15 78183081 78183323 -23197198 - L2 LINE L2 -1 3312 3016 2122 111 4 0 chr15 78183393 78183673 -23196848 - AluSx SINE Alu -31 281 1 1696 135 0 0 chr15 78183733 78183977 -23196544 + AluSx SINE Alu 59 302 -10 217 338 28 0 chr15 78184431 78184502 -23196019 + L2 LINE L2 3018 3090 -182 690 184 33 33 chr15 78184614 78184766 -23195755 - MER3 DNA MER1_type -16 193 42 463 193 216 0 chr15 78184836 78185017 -23195504 + MER33 DNA MER1_type 26 245 -79 1227 121 0 11 chr15 78185028 78185187 -23195334 - AluSg/x SINE Alu -18 294 135 218 56 28 0 chr15 78185187 78185223 -23195298 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1532 141 10 76 chr15 78185223 78185440 -23195081 - AluJb SINE Alu -28 284 91 2217 100 0 0 chr15 78185440 78185731 -23194790 - AluSx SINE Alu -21 291 1 1532 141 10 76 chr15 78185731 78185817 -23194704 - AluJb SINE Alu -221 91 1 1227 121 0 11 chr15 78185817 78185830 -23194691 - AluSg/x SINE Alu -175 137 123 346 185 31 0 chr15 78185831 78185896 -23194625 + MER33 DNA MER1_type 297 363 0 298 311 204 10 chr15 78185901 78186004 -23194517 + L2 LINE L2 3149 3271 -1 21 0 0 0 chr15 78186160 78186181 -23194340 + AT_rich Low_complexity Low_complexity 1 21 0 1736 124 88 11 chr15 78186667 78186967 -23193554 - AluSg SINE Alu 0 310 1 386 244 120 53 chr15 78190921 78191130 -23189391 - L1ME LINE L1 -373 5748 5526 21 0 0 0 chr15 78192258 78192279 -23188242 + AT_rich Low_complexity Low_complexity 1 21 0 386 337 139 23 chr15 78193000 78193309 -23187212 + L2 LINE L2 1948 2292 -1022 191 349 18 18 chr15 78193709 78193818 -23186703 - MIR SINE MIR -148 114 6 2442 84 0 3 chr15 78194748 78195058 -23185463 - AluSg SINE Alu -1 309 1 4811 125 35 52 chr15 78195111 78195950 -23184571 - L1PA16 LINE L1 -1 6165 5313 1499 50 0 0 chr15 78195950 78196130 -23184391 - L1PA3 LINE L1 -3 6152 5973 4811 125 35 52 chr15 78196130 78196276 -23184245 - L1PA16 LINE L1 -853 5313 5192 2522 50 3 0 chr15 78196276 78196578 -23183943 - AluY SINE Alu -8 303 1 4811 125 35 52 chr15 78196578 78196601 -23183920 - L1PA16 LINE L1 -974 5192 5170 2297 67 13 17 chr15 78196708 78197008 -23183513 - AluY SINE Alu -12 299 1 2011 149 7 0 chr15 78197046 78197355 -23183166 - AluSx SINE Alu -1 311 1 1056 154 205 48 chr15 78197407 78197678 -23182843 - MER44D DNA MER2_type -1882 609 382 2198 167 41 19 chr15 78197678 78198097 -23182424 - MSTA LTR MaLR 0 428 1 1056 154 205 48 chr15 78198097 78198118 -23182403 - MER44D DNA MER2_type -2109 382 1 1634 166 16 103 chr15 78198447 78198875 -23181646 - MER57A LTR ERV1 -9 394 4 322 286 57 5 chr15 78199334 78199534 -23180987 - MIR SINE MIR -65 197 20 2443 66 3 3 chr15 78200047 78200349 -23180172 - AluY SINE Alu -9 302 1 1441 142 188 0 chr15 78200685 78200924 -23179597 + AluSg SINE Alu 1 284 -26 1242 154 36 9 chr15 78201292 78201512 -23179009 + MER46A DNA MER2_type 2 227 -9 207 333 32 0 chr15 78201819 78201882 -23178639 - L2 LINE L2 -45 3227 3163 266 349 158 0 chr15 78202083 78202229 -23178292 + L2 LINE L2 343 511 -2803 427 255 38 9 chr15 78202349 78202455 -23178066 + L2 LINE L2 3205 3313 0 289 262 124 15 chr15 78202577 78202779 -23177742 - L1ME4a LINE L1 -4 6117 5894 690 146 85 0 chr15 78202848 78202978 -23177543 + MER7A DNA MER2_type 2 140 -206 2330 96 3 10 chr15 78203085 78203397 -23177124 - AluSp SINE Alu -3 310 1 681 233 100 12 chr15 78203409 78203658 -23176863 - L1MB7 LINE L1 -18 6166 5896 3117 214 29 7 chr15 78203709 78204470 -23176051 - L1MB4 LINE L1 -2 6178 5401 323 297 18 18 chr15 78204783 78204894 -23175627 - L1MC4 LINE L1 -14 8028 7918 759 217 49 12 chr15 78204976 78205205 -23175316 - L1MC4 LINE L1 -116 7692 7588 2145 105 10 7 chr15 78205343 78205637 -23174884 + AluSq SINE Alu 1 295 -18 413 215 231 31 chr15 78205825 78205955 -23174566 - MER3 DNA MER1_type -4 205 50 2046 108 37 0 chr15 78206318 78206614 -23173907 - AluSx SINE Alu -5 307 1 197 279 0 66 chr15 78207191 78207252 -23173269 - MIR SINE MIR -158 104 48 727 245 78 0 chr15 78207372 78207564 -23172957 + MIR SINE MIR 7 213 -49 258 301 98 8 chr15 78207685 78207808 -23172713 - L2 LINE L2 -986 2328 2195 234 0 0 0 chr15 78208219 78208245 -23172276 + (TG)n Simple_repeat Simple_repeat 2 27 0 26 30 0 0 chr15 78208671 78208704 -23171817 + AT_rich Low_complexity Low_complexity 1 33 0 1756 181 0 10 chr15 78208705 78208997 -23171524 - AluJo SINE Alu -23 289 1 740 156 15 30 chr15 78209264 78209399 -23171122 + AluJo/FLAM SINE Alu 1 133 -169 704 135 0 0 chr15 78209400 78209504 -23171017 + AluSg/x SINE Alu 187 290 -19 2162 95 0 42 chr15 78210015 78210321 -23170200 - AluSg SINE Alu -15 295 3 2187 83 17 0 chr15 78210504 78210794 -23169727 + AluSq SINE Alu 1 295 -18 1378 141 33 0 chr15 78211285 78211526 -23168995 + MER1B DNA MER1_type 26 274 -65 646 214 50 79 chr15 78211879 78212159 -23168362 + MER1B DNA MER1_type 44 315 -24 2358 210 73 34 chr15 78212170 78212414 -23168107 - L1MC4 LINE L1 -77 7965 7732 1914 112 47 0 chr15 78212414 78212690 -23167831 - AluSq SINE Alu -11 302 14 2358 210 73 34 chr15 78212690 78213203 -23167318 - L1MC4 LINE L1 -310 7732 7179 442 346 111 27 chr15 78213261 78213649 -23166872 - L3 LINE CR1 -138 1439 1018 779 298 44 12 chr15 78213649 78213901 -23166620 + MIR SINE MIR 3 262 0 2218 110 0 0 chr15 78214630 78214929 -23165592 - AluSx SINE Alu -12 300 2 26 0 0 0 chr15 78214965 78214991 -23165530 + AT_rich Low_complexity Low_complexity 1 26 0 2008 119 7 18 chr15 78214996 78215311 -23165210 + AluSq SINE Alu 1 312 0 24 0 0 0 chr15 78216257 78216281 -23164240 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr15 78216372 78216394 -23164127 + AT_rich Low_complexity Low_complexity 1 22 0 38 39 0 0 chr15 78216632 78216684 -23163837 + AT_rich Low_complexity Low_complexity 1 52 0 2023 138 3 0 chr15 78217249 78217547 -23162974 - AluSx SINE Alu -13 299 1 602 298 11 11 chr15 78218430 78218611 -23161910 + MIR SINE MIR 15 195 -67 2181 103 3 7 chr15 78218811 78219112 -23161409 + AluSg SINE Alu 1 300 -10 355 230 0 0 chr15 78219150 78219224 -23161297 - MER3 DNA MER1_type -95 114 41 2265 79 3 13 chr15 78219421 78219724 -23160797 - AluY SINE Alu -11 300 1 23 33 0 0 chr15 78219732 78219762 -23160759 + AT_rich Low_complexity Low_complexity 1 30 0 1590 102 154 23 chr15 78219777 78220043 -23160478 - AluSq SINE Alu -2 301 1 369 264 0 56 chr15 78220805 78220930 -23159591 + MIR SINE MIR 118 235 -27 1544 189 28 14 chr15 78221485 78221770 -23158751 - AluJo SINE Alu -23 289 1 2038 107 21 7 chr15 78221868 78222149 -23158372 + AluSx SINE Alu 1 285 -27 252 0 0 0 chr15 78222164 78222192 -23158329 + (TCCA)n Simple_repeat Simple_repeat 2 29 0 186 224 0 35 chr15 78222796 78222854 -23157667 + MER5C DNA MER1_type 77 132 -192 297 228 30 119 chr15 78223870 78223927 -23156594 - L2 LINE L2 0 3313 3267 953 244 9 9 chr15 78223927 78224148 -23156373 + MER58A DNA MER1_type 1 221 -3 297 228 30 119 chr15 78224148 78224191 -23156330 - L2 LINE L2 -46 3267 3222 2155 112 0 7 chr15 78224558 78224853 -23155668 + AluSq SINE Alu 1 293 -20 348 170 104 47 chr15 78224854 78224960 -23155561 - Charlie1a DNA MER1_type -1137 318 207 684 197 0 7 chr15 78225032 78225169 -23155352 - Charlie1a DNA MER1_type -1244 211 76 2010 113 25 4 chr15 78225170 78225445 -23155076 + AluSq SINE Alu 1 281 -32 198 121 45 45 chr15 78225450 78225516 -23155005 + G-rich Low_complexity Low_complexity 4 69 0 300 241 17 0 chr15 78225522 78225580 -23154941 - Charlie1a DNA MER1_type -1396 59 1 678 217 227 0 chr15 78225581 78225779 -23154742 + MIR SINE MIR 18 260 -2 2245 98 27 0 chr15 78226355 78226652 -23153869 - AluSx SINE Alu -4 308 4 1087 215 206 11 chr15 78226833 78227406 -23153115 - L2 LINE L2 0 3313 2636 1715 214 109 25 chr15 78227425 78227911 -23152610 - MLT1F LTR MaLR -7 535 9 1055 218 183 27 chr15 78227911 78228495 -23152026 + L1M4 LINE L1 4345 5019 -1127 606 251 5 73 chr15 78228910 78229101 -23151420 + MER8 DNA MER2_type 1 178 -61 279 259 170 18 chr15 78229478 78229590 -23150931 - Charlie8 DNA MER1_type -2168 249 121 2049 111 7 3 chr15 78229605 78229893 -23150628 + AluSq SINE Alu 1 289 -24 2118 119 3 0 chr15 78230035 78230321 -23150200 - AluSg SINE Alu -23 287 1 519 294 105 17 chr15 78230834 78231072 -23149449 - Charlie8 DNA MER1_type -2157 260 2 395 272 175 29 chr15 78231759 78231965 -23148556 - MIR SINE MIR -10 252 17 180 0 0 0 chr15 78232631 78232651 -23147870 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 688 269 25 5 chr15 78232666 78232863 -23147658 + MIR SINE MIR 61 261 -1 469 232 30 77 chr15 78233670 78233838 -23146683 - MER106B DNA MER1_type -4 1055 896 1739 188 144 134 chr15 78233952 78234856 -23145665 - Charlie1 DNA MER1_type -59 2702 1808 1951 126 7 3 chr15 78234856 78235149 -23145372 - AluYa5 SINE Alu -17 294 1 1739 188 144 134 chr15 78235149 78235562 -23144959 - Charlie1 DNA MER1_type -953 1808 66 185 206 29 0 chr15 78235604 78235638 -23144883 - MIR SINE MIR -183 79 45 274 167 15 15 chr15 78235662 78235728 -23144793 + (TA)n Simple_repeat Simple_repeat 1 66 0 1747 100 8 15 chr15 78235749 78236008 -23144513 - AluSg SINE Alu -12 298 42 282 139 167 0 chr15 78236042 78236114 -23144407 + L1M4 LINE L1 3650 3733 -2413 192 200 0 0 chr15 78236179 78236219 -23144302 + (TA)n Simple_repeat Simple_repeat 2 41 0 24 53 0 0 chr15 78236900 78236938 -23143583 + AT_rich Low_complexity Low_complexity 1 38 0 268 284 104 51 chr15 78237089 78237484 -23143037 - L1ME4a LINE L1 -209 5912 5497 1274 163 109 57 chr15 78241247 78241530 -23138991 + AluJo SINE Alu 1 298 -14 2526 54 0 0 chr15 78241779 78242074 -23138447 + AluY SINE Alu 1 295 -16 201 283 0 0 chr15 78242562 78242615 -23137906 + (TA)n Simple_repeat Simple_repeat 1 53 0 * 209 213 21 0 chr15 78242577 78242624 -23137897 + (TATG)n Simple_repeat Simple_repeat 4 51 0 222 270 90 0 chr15 78243461 78243550 -23136971 + MIR SINE MIR 101 197 -65 341 326 104 26 chr15 78243631 78243824 -23136697 + L3 LINE CR1 1369 1576 -1 3824 187 81 22 chr15 78243949 78244458 -23136063 + L1MB7 LINE L1 4672 5150 -1034 1747 146 31 14 chr15 78244458 78244746 -23135775 + AluJb SINE Alu 1 293 -19 3824 187 81 22 chr15 78244746 78244933 -23135588 + L1MB7 LINE L1 5150 5325 -859 2160 110 3 7 chr15 78244933 78245243 -23135278 + AluSq SINE Alu 1 309 -4 3824 187 81 22 chr15 78245243 78245958 -23134563 + L1MB7 LINE L1 5325 6162 -22 427 160 40 0 chr15 78246753 78246828 -23133693 - L2 LINE L2 -45 3268 3191 209 321 107 38 chr15 78247063 78247194 -23133327 - L2 LINE L2 -11 3261 3122 550 337 92 56 chr15 78247206 78247788 -23132733 - L2 LINE L2 -4 3268 2657 418 219 151 0 chr15 78249254 78249373 -23131148 + MIR SINE MIR 125 261 -1 190 346 77 0 chr15 78249530 78249634 -23130887 - L2 LINE L2 -220 3052 2941 14837 124 58 45 chr15 78249763 78250808 -23129713 + Tigger2 DNA MER2_type 1 1031 -1687 2085 121 3 10 chr15 78250808 78251122 -23129399 - AluSx SINE Alu 0 312 1 14837 124 58 45 chr15 78251122 78251616 -23128905 + Tigger2 DNA MER2_type 1031 1517 -1201 1960 126 0 7 chr15 78251616 78251917 -23128604 - AluSq SINE Alu -14 299 1 14837 124 58 45 chr15 78251917 78253059 -23127462 + Tigger2 DNA MER2_type 1517 2718 0 245 204 82 0 chr15 78253094 78253143 -23127378 - MIR SINE MIR -4 258 206 811 152 8 23 chr15 78253284 78253416 -23127105 + FLAM_C SINE Alu 4 133 0 1657 166 14 7 chr15 78253471 78253766 -23126755 + AluJo SINE Alu 1 297 -15 22 35 0 0 chr15 78253769 78253798 -23126723 + AT_rich Low_complexity Low_complexity 1 29 0 2107 117 0 0 chr15 78253812 78254110 -23126411 + AluSc SINE Alu 1 298 -11 406 251 316 5 chr15 78254447 78254634 -23125887 - MIR SINE MIR -5 257 13 569 282 131 43 chr15 78256531 78257605 -23122916 + L1ME3 LINE L1 3821 5008 -1138 1762 114 75 4 chr15 78257655 78257936 -23122585 + AluSg SINE Alu 1 301 -9 594 293 57 48 chr15 78258135 78258288 -23122233 + L1ME3 LINE L1 5528 5678 -484 2062 123 0 0 chr15 78258288 78258588 -23121933 + AluSg SINE Alu 1 300 -10 594 293 57 48 chr15 78258588 78258748 -23121773 + L1ME3 LINE L1 5678 5844 -318 2092 69 0 24 chr15 78258916 78259204 -23121317 - AluY SINE Alu -30 281 1 2222 90 3 3 chr15 78259206 78259506 -23121015 - AluSq SINE Alu -13 300 1 2753 135 70 12 chr15 78260186 78260669 -23119852 - MER9 LTR ERVK 0 511 1 2408 238 107 46 chr15 78260872 78261042 -23119479 + L1MC2 LINE L1 4236 4394 -1752 2114 110 0 10 chr15 78261042 78261350 -23119171 + AluSc SINE Alu 3 307 -2 2408 238 107 46 chr15 78261350 78262257 -23118264 + L1MC2 LINE L1 4394 5378 -768 650 186 0 0 chr15 78262267 78262369 -23118152 + FLAM_A SINE Alu 20 121 -21 1932 145 61 0 chr15 78262415 78262760 -23117761 + L1MC2 LINE L1 5670 6035 -309 * 2311 126 0 42 chr15 78262759 78262922 -23117599 + L1MA8 LINE L1 4363 4531 -1615 2199 78 10 13 chr15 78262922 78263230 -23117291 + AluSp SINE Alu 1 307 -6 2311 126 0 42 chr15 78263230 78263472 -23117049 + L1MA8 LINE L1 4531 4751 -1395 1274 181 20 36 chr15 78263472 78263721 -23116800 + AluJb SINE Alu 1 245 -67 5969 142 33 7 chr15 78263884 78265207 -23115314 + L1MA8 LINE L1 4737 6110 -181 2167 84 0 17 chr15 78265207 78265504 -23115017 - AluSc SINE Alu -17 292 1 5969 142 33 7 chr15 78265504 78265687 -23114834 + L1MA8 LINE L1 6110 6287 -4 446 320 0 34 chr15 78265900 78266075 -23114446 - MIR SINE MIR -8 254 86 2021 111 0 0 chr15 78266141 78266460 -23114061 + AluSg SINE Alu 1 319 0 369 0 0 0 chr15 78266574 78266615 -23113906 + (TG)n Simple_repeat Simple_repeat 1 41 0 312 70 0 0 chr15 78266617 78266660 -23113861 + (GA)n Simple_repeat Simple_repeat 2 44 0 208 353 35 0 chr15 78268521 78268606 -23111915 + L2 LINE L2 3184 3271 -42 192 314 0 0 chr15 78268657 78268708 -23111813 - L2 LINE L2 -13 3300 3250 377 256 25 25 chr15 78269487 78269608 -23110913 + CT-rich Low_complexity Low_complexity 2 122 0 187 200 140 0 chr15 78269610 78269660 -23110861 - L2 LINE L2 -6 3266 3210 * 798 249 0 0 chr15 78269633 78269798 -23110723 - MIR SINE MIR -30 232 68 218 186 23 0 chr15 78270189 78270232 -23110289 + G-rich Low_complexity Low_complexity 4 47 0 324 260 6 55 chr15 78270337 78270518 -23110003 + (CGGGG)n Simple_repeat Simple_repeat 5 176 0 22 35 0 0 chr15 78270996 78271025 -23109496 + GC_rich Low_complexity Low_complexity 1 29 0 462 36 0 0 chr15 78271218 78271274 -23109247 + (GAGTG)n Simple_repeat Simple_repeat 1 56 0 221 200 163 25 chr15 78271324 78271404 -23109117 + MIR SINE MIR 41 131 -131 577 289 170 27 chr15 78272997 78273367 -23107154 + L2 LINE L2 2846 3268 -4 686 235 69 16 chr15 78273367 78273570 -23106951 - MIR SINE MIR -21 241 31 3858 177 60 51 chr15 78273570 78274515 -23106006 - LTR13 LTR ERVK 0 954 1 327 260 118 24 chr15 78274663 78274790 -23105731 - MIR3 SINE MIR -51 157 19 227 310 42 0 chr15 78275744 78275815 -23104706 + L3 LINE CR1 1419 1492 -85 312 314 106 55 chr15 78276740 78276976 -23103545 - MIR SINE MIR -13 249 2 1988 95 33 0 chr15 78277016 78277289 -23103232 + AluSx SINE Alu 14 295 -17 907 115 8 15 chr15 78277290 78277420 -23103101 - AluJo/FLAM SINE Alu -173 129 1 318 248 51 51 chr15 78280797 78280914 -23099607 - MIR SINE MIR -65 197 81 230 333 12 0 chr15 78281220 78281301 -23099220 - MIR SINE MIR -91 117 36 490 288 112 30 chr15 78281728 78282106 -23098415 + L1ME4a LINE L1 5552 5964 -157 2477 158 74 11 chr15 78282107 78282582 -23097939 - MLT1D LTR MaLR 0 505 1 225 154 0 0 chr15 78282582 78282621 -23097900 + (CA)n Simple_repeat Simple_repeat 1 39 0 2165 76 0 63 chr15 78283158 78283294 -23097227 + AluSg SINE Alu 1 144 -166 2173 104 3 0 chr15 78283294 78283593 -23096928 + AluSx SINE Alu 1 300 -12 2165 76 0 63 chr15 78283593 78283772 -23096749 + AluSg SINE Alu 144 296 -14 23 68 0 0 chr15 78283974 78284018 -23096503 + AT_rich Low_complexity Low_complexity 1 44 0 1825 141 3 32 chr15 78284169 78284481 -23096040 - AluJb SINE Alu -9 303 1 395 281 51 56 chr15 78284484 78284678 -23095843 - L1M4 LINE L1 -779 5367 5174 2359 66 3 0 chr15 78284678 78284982 -23095539 - AluY SINE Alu -6 305 1 395 281 51 56 chr15 78284982 78285200 -23095321 - L1M4 LINE L1 -972 5174 4957 873 231 220 31 chr15 78285200 78285555 -23094966 - MLT1D LTR MaLR 0 505 84 2271 100 0 0 chr15 78285578 78285879 -23094642 - AluSx SINE Alu -11 301 1 668 88 0 0 chr15 78285879 78285970 -23094551 - L1MB3 LINE L1 -351 5832 5742 2987 211 24 22 chr15 78286516 78287146 -23093375 - MER82 DNA MER2_type 0 653 23 464 139 0 14 chr15 78287149 78287221 -23093300 + AluS SINE Alu 2 72 -241 2333 82 0 0 chr15 78287328 78287631 -23092890 - AluY SINE Alu -8 303 1 1039 166 80 0 chr15 78287644 78287843 -23092678 - L1MD1 LINE L1 0 6242 6028 42 0 0 0 chr15 78288853 78288895 -23091626 + AT_rich Low_complexity Low_complexity 1 42 0 1428 41 0 0 chr15 78288895 78289064 -23091457 - L1PA4 LINE L1 -3 6152 5984 1612 27 0 0 chr15 78289064 78289248 -23091273 + L1PA4 LINE L1 5764 5947 -208 1913 154 0 3 chr15 78289248 78289560 -23090961 - AluJb SINE Alu -1 311 1 222 255 149 21 chr15 78290155 78290249 -23090272 + MIR SINE MIR 26 131 -77 632 238 209 15 chr15 78290272 78290478 -23090043 - MIR SINE MIR -1 261 16 313 189 78 22 chr15 78292142 78292232 -23088289 + MER113 DNA MER1_type? 63 157 -364 238 290 0 29 chr15 78292260 78292329 -23088192 + MER113 DNA MER1_type? 455 521 0 191 329 105 13 chr15 78293103 78293255 -23087266 - L3 LINE CR1 -7 1570 1405 578 265 56 11 chr15 78293480 78293678 -23086843 + MIR SINE MIR 34 237 -25 2214 112 6 16 chr15 78293800 78294114 -23086407 - AluSp SINE Alu -2 311 1 372 309 18 0 chr15 78294331 78294441 -23086080 - MIR3 SINE MIR -50 158 47 192 324 148 0 chr15 78294719 78294827 -23085694 + L3 LINE CR1 1291 1414 -163 595 269 7 0 chr15 78295029 78295174 -23085347 + MER117 DNA MER1_type 52 197 0 2633 226 38 60 chr15 78295691 78295738 -23084783 - L1ME3A LINE L1 -5 6165 6118 2071 117 0 7 chr15 78295738 78296019 -23084502 + AluJo SINE Alu 23 301 -11 2633 226 38 60 chr15 78296019 78296386 -23084135 - L1ME3A LINE L1 -52 6118 5744 2519 47 3 17 chr15 78296386 78296686 -23083835 - AluY SINE Alu -15 296 1 2633 226 38 60 chr15 78296686 78297105 -23083416 - L1ME3A LINE L1 -426 5744 5350 406 268 31 16 chr15 78299418 78299545 -23080976 + MIR SINE MIR 10 138 -124 1076 102 0 14 chr15 78299548 78299695 -23080826 - AluSg/x SINE Alu -16 294 150 1166 209 194 25 chr15 78299735 78300136 -23080385 - MLT1D LTR MaLR 0 505 37 378 312 47 6 chr15 78300362 78300569 -23079952 - MIR SINE MIR -13 249 35 803 251 64 5 chr15 78301518 78301737 -23078784 - MIR SINE MIR -21 241 10 336 291 18 9 chr15 78302591 78302701 -23077820 + L2 LINE L2 2927 3037 -235 208 362 95 0 chr15 78302917 78303022 -23077499 - MIR SINE MIR -74 188 74 645 307 55 9 chr15 78303028 78303246 -23077275 - MIR SINE MIR -2 260 33 2179 130 36 28 chr15 78303301 78303662 -23076859 - THE1B LTR MaLR 0 364 1 1622 204 86 3 chr15 78304336 78304381 -23076140 - MLT2D LTR ERVL 0 414 374 198 71 0 0 chr15 78304381 78304409 -23076112 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 1622 204 86 3 chr15 78304409 78304745 -23075776 - MLT2D LTR ERVL -40 374 1 1082 233 137 23 chr15 78305132 78305519 -23075002 - L2 LINE L2 0 3313 2883 857 207 86 128 chr15 78305519 78305973 -23074548 - MLT1J LTR MaLR -76 435 1 1961 161 0 6 chr15 78307464 78307775 -23072746 - AluJb SINE Alu -2 310 2 230 296 160 16 chr15 78308292 78308417 -23072104 + L2 LINE L2 3171 3313 0 1131 224 107 53 chr15 78308459 78308870 -23071651 - Zaphod DNA AcHobo -1 4030 3598 * 1552 211 80 139 chr15 78308858 78309126 -23071395 - Zaphod DNA AcHobo -3034 997 715 785 182 0 0 chr15 78309126 78309258 -23071263 - FLAM_A SINE Alu -1 132 1 1552 211 80 139 chr15 78309258 78310048 -23070473 - Zaphod DNA AcHobo -3316 715 1 240 267 17 0 chr15 78310105 78310165 -23070356 - MIR SINE MIR -103 105 45 895 221 53 34 chr15 78311001 78311264 -23069257 + LTR33 LTR ERVL 11 278 -243 1104 271 53 12 chr15 78311495 78311834 -23068687 + ERVL LTR ERVL 2222 2574 -3190 548 263 82 6 chr15 78311843 78312014 -23068507 + MER5A DNA MER1_type 1 184 -5 1624 322 40 12 chr15 78312060 78312709 -23067812 + ERVL LTR ERVL 2611 3277 -2487 1316 291 59 32 chr15 78312714 78313209 -23067312 + ERVL LTR ERVL 3928 4435 -1329 1934 151 117 14 chr15 78313239 78313591 -23066930 - MSTD LTR MaLR -8 388 1 513 318 68 20 chr15 78313635 78313887 -23066634 + ERVL LTR ERVL 4872 5135 -629 372 268 10 0 chr15 78313912 78314009 -23066512 - MER5A DNA MER1_type -83 106 9 1445 242 47 40 chr15 78314535 78314849 -23065672 + LTR33 LTR ERVL 64 383 -138 1671 169 3 45 chr15 78314849 78315162 -23065359 - AluJo SINE Alu -7 305 6 1445 242 47 40 chr15 78315162 78315294 -23065227 + LTR33 LTR ERVL 383 513 -8 233 309 128 23 chr15 78316575 78316879 -23063642 + L1ME4a LINE L1 5712 6047 -74 371 260 188 13 chr15 78317000 78317154 -23063367 - MER5A DNA MER1_type 0 189 9 507 299 30 0 chr15 78318074 78318208 -23062313 - MIR SINE MIR -70 192 55 21 0 0 0 chr15 78318427 78318448 -23062073 + AT_rich Low_complexity Low_complexity 1 21 0 476 220 9 9 chr15 78318460 78318569 -23061952 - MIR SINE MIR -63 145 37 548 137 130 27 chr15 78318827 78318973 -23061548 + L1ME4a LINE L1 5959 6119 -2 820 162 28 14 chr15 78320267 78320409 -23060112 - FRAM SINE Alu -31 145 2 316 261 9 52 chr15 78321071 78321186 -23059335 - MIR SINE MIR -71 191 82 1871 94 94 8 chr15 78321701 78321968 -23058553 + AluSx SINE Alu 17 306 -6 327 203 0 0 chr15 78321968 78322042 -23058479 + (TA)n Simple_repeat Simple_repeat 1 74 0 3248 140 31 32 chr15 78322054 78322447 -23058074 - L1MB3 LINE L1 -10 6173 5780 234 0 0 0 chr15 78322447 78322473 -23058048 + (TA)n Simple_repeat Simple_repeat 1 26 0 3248 140 31 32 chr15 78322473 78322666 -23057855 - L1MB3 LINE L1 -403 5780 5588 923 277 96 21 chr15 78322860 78323284 -23057237 - L1MC4a LINE L1 -1851 5957 5493 2179 184 69 11 chr15 78323284 78323720 -23056801 + LOR1b LTR ERV1 1 461 0 923 277 96 21 chr15 78323720 78323765 -23056756 - L1MC4a LINE L1 -2315 5493 5453 391 291 33 52 chr15 78323800 78324010 -23056511 - L1MC4 LINE L1 -11 8031 7826 372 200 67 0 chr15 78324040 78324130 -23056391 - L1ME2 LINE L1 0 6164 6069 511 191 15 22 chr15 78324138 78324274 -23056247 - L1MC4a LINE L1 -2383 5425 5291 225 213 33 16 chr15 78324317 78324378 -23056143 + T-rich Low_complexity Low_complexity 3 64 0 533 296 89 22 chr15 78324472 78324796 -23055725 - HAL1b LINE L1 -437 911 566 * 619 293 104 12 chr15 78324794 78325382 -23055139 - L1MEc LINE L1 -4898 1498 857 350 286 58 50 chr15 78325930 78326171 -23054350 + L1MC4a LINE L1 5696 5938 -1870 316 331 29 15 chr15 78326541 78326677 -23053844 - MIR3 SINE MIR -48 160 23 1404 214 92 17 chr15 78328513 78328872 -23051649 - MLT1B LTR MaLR -4 386 1 919 283 54 16 chr15 78329737 78330121 -23050400 + LTR16A1 LTR ERVL 87 454 -3 979 283 7 32 chr15 78330319 78330602 -23049919 + MLT1D-int LTR MaLR 612 887 -484 1538 207 152 32 chr15 78330682 78331122 -23049399 + MLT1D-int LTR MaLR 877 1369 -2 1129 183 118 52 chr15 78331126 78331432 -23049089 + MLT1D LTR MaLR 3 328 -177 378 275 48 82 chr15 78331434 78331773 -23048748 + HAL1b LINE L1 373 674 -674 26 0 0 0 chr15 78332008 78332034 -23048487 + AT_rich Low_complexity Low_complexity 1 26 0 508 302 102 33 chr15 78332163 78332895 -23047626 + L1M4 LINE L1 2677 3459 -2687 2064 125 0 14 chr15 78334407 78334718 -23045803 - AluSx SINE Alu 0 307 1 467 288 72 88 chr15 78335096 78335325 -23045196 - L1 LINE L1 -2310 3836 3605 1741 184 0 0 chr15 78335325 78335650 -23044871 - AluJb SINE Alu 0 325 1 467 288 72 88 chr15 78335650 78335951 -23044570 - L1 LINE L1 -2541 3605 3316 1837 155 7 17 chr15 78335951 78336242 -23044279 - AluJo SINE Alu -24 288 1 467 288 72 88 chr15 78336242 78336417 -23044104 - L1 LINE L1 -2830 3316 3140 21 0 0 0 chr15 78336417 78336438 -23044083 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr15 78336671 78336696 -23043825 + AT_rich Low_complexity Low_complexity 1 25 0 1816 136 3 45 chr15 78336739 78337048 -23043473 - AluJo SINE Alu -16 296 1 990 292 116 34 chr15 78337059 78337902 -23042619 - L1ME3 LINE L1 -223 5939 5166 740 11 11 0 chr15 78337902 78337991 -23042530 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 990 292 116 34 chr15 78337991 78338683 -23041838 - L1ME3 LINE L1 -996 5166 4231 2605 37 0 3 chr15 78338683 78339011 -23041510 - AluY SINE Alu 0 327 1 990 292 116 34 chr15 78339011 78339231 -23041290 - L1ME3 LINE L1 -1931 4231 4030 835 188 0 0 chr15 78339243 78339397 -23041124 + FRAM SINE Alu 5 158 -18 386 301 81 48 chr15 78339414 78339956 -23040565 - L1 LINE L1 -3000 3146 2587 702 256 44 44 chr15 78340007 78340393 -23040128 - L1MC5 LINE L1 -38 7923 7538 2232 188 90 52 chr15 78340731 78340873 -23039648 - L1ME3 LINE L1 -171 5991 5856 1911 119 80 3 chr15 78340873 78341159 -23039362 - AluSp SINE Alu -5 308 1 2232 188 90 52 chr15 78341159 78341616 -23038905 - L1ME3 LINE L1 -306 5856 5369 1300 207 52 36 chr15 78341648 78341666 -23038855 - L1ME3 LINE L1 -1298 4848 4832 1004 262 118 63 chr15 78341666 78342192 -23038329 + MLT1H1 LTR MaLR 1 555 0 1300 207 52 36 chr15 78342192 78342559 -23037962 - L1ME3 LINE L1 -1314 4832 4457 1882 148 3 0 chr15 78342562 78342845 -23037676 - AluSx SINE Alu -28 284 1 340 289 60 92 chr15 78342858 78343371 -23037150 - HAL1 LINE L1 -857 1650 1154 5973 120 41 31 chr15 78345297 78346281 -23034240 - Tigger1 DNA MER2_type -4 2414 1422 1044 159 110 75 chr15 78346386 78346444 -23034077 + MER46A DNA MER2_type 1 55 -2676 2091 97 0 3 chr15 78346444 78346733 -23033788 - AluSg1 SINE Alu -19 290 3 1044 159 110 75 chr15 78346733 78346901 -23033620 + MER46A DNA MER2_type 55 235 -1 291 256 37 0 chr15 78347098 78347180 -23033341 + MER5C DNA MER1_type 39 123 -201 212 224 0 52 chr15 78347294 78347352 -23033169 + MER5C DNA MER1_type 254 308 -16 274 108 0 0 chr15 78348180 78348217 -23032304 - Alu SINE Alu -265 37 1 956 211 118 10 chr15 78348226 78348530 -23031991 - L1ME3 LINE L1 -2845 3301 2965 1982 130 0 3 chr15 78348582 78348882 -23031639 + AluSx SINE Alu 1 299 -13 316 220 0 121 chr15 78348882 78348973 -23031548 - L1ME3 LINE L1 -3271 2875 2796 234 91 0 0 chr15 78349197 78349230 -23031291 + (A)n Simple_repeat Simple_repeat 1 33 0 471 283 26 98 chr15 78350656 78350749 -23029772 + MIR SINE MIR 17 115 -147 2155 91 3 0 chr15 78350749 78351046 -23029475 - AluSg1 SINE Alu -11 298 1 471 283 26 98 chr15 78351046 78351217 -23029304 + MIR SINE MIR 115 262 0 2081 126 0 0 chr15 78352284 78352585 -23027936 - AluSx SINE Alu -11 301 1 284 333 10 0 chr15 78352762 78352861 -23027660 + MIR SINE MIR 21 120 -142 185 250 184 13 chr15 78353372 78353448 -23027073 + L2 LINE L2 2232 2320 -994 775 273 16 5 chr15 78353589 78353776 -23026745 + MIR SINE MIR 63 251 -11 890 224 76 9 chr15 78354005 78354228 -23026293 + MER58 DNA MER1_type 37 274 -2146 3100 144 82 61 chr15 78354240 78354307 -23026214 + Tigger3b DNA MER2_type 1 65 -2963 1991 132 0 0 chr15 78354307 78354603 -23025918 + AluSx SINE Alu 1 296 -16 3100 144 82 61 chr15 78354603 78354860 -23025661 + Tigger3b DNA MER2_type 65 315 -2713 2275 97 0 0 chr15 78354860 78355171 -23025350 + AluY SINE Alu 1 311 0 3100 144 82 61 chr15 78355171 78355531 -23024990 + Tigger3b DNA MER2_type 315 700 -531 2122 117 3 7 chr15 78355535 78355843 -23024678 + AluSq SINE Alu 3 309 -4 3292 192 87 4 chr15 78355845 78356558 -23023963 + L1MB7 LINE L1 5391 6162 -22 1268 137 46 9 chr15 78357898 78358117 -23022404 - AluYb8 SINE Alu -91 227 1 1316 170 0 0 chr15 78358150 78358356 -23022165 + Tigger3b DNA MER2_type 1026 1231 0 3054 60 80 7 chr15 78358652 78359066 -23021455 + MLT2A1 LTR ERVL 1 444 0 541 179 56 74 chr15 78359223 78359308 -23021213 + MER69 DNA AcHobo 2368 2450 -76 2193 88 3 3 chr15 78359308 78359604 -23020917 - AluSp SINE Alu -13 300 5 541 179 56 74 chr15 78359604 78359680 -23020841 + MER69 DNA AcHobo 2450 2526 0 348 276 8 57 chr15 78361270 78361393 -23019128 - MIR SINE MIR -41 221 105 441 249 89 95 chr15 78361923 78362261 -23018260 + MER102b DNA MER1_type 4 339 -2 289 196 0 0 chr15 78364048 78364099 -23016422 - MER5A DNA MER1_type -114 75 25 569 314 31 31 chr15 78364245 78364471 -23016050 + MIR SINE MIR 8 233 -29 845 267 78 26 chr15 78364702 78365041 -23015480 - MLT1H1 LTR MaLR -51 544 12 263 301 12 108 chr15 78366042 78366208 -23014313 - MER5A DNA MER1_type 0 189 40 408 320 34 51 chr15 78366280 78366514 -23014007 - MIR SINE MIR -11 251 22 463 254 25 17 chr15 78367881 78367999 -23012522 + MER117 DNA MER1_type 71 189 -8 1599 147 52 33 chr15 78368276 78368582 -23011939 - AluJo SINE Alu 0 312 1 354 261 274 0 chr15 78368745 78368898 -23011623 + MIR SINE MIR 56 250 -12 301 247 130 0 chr15 78368930 78369007 -23011514 - MIR SINE MIR -67 141 55 26 30 0 0 chr15 78371446 78371479 -23009042 + GC_rich Low_complexity Low_complexity 1 33 0 251 204 0 0 chr15 78371887 78371936 -23008585 + L1P LINE L1 4123 4171 -1975 217 109 43 0 chr15 78371967 78372013 -23008508 + (TA)n Simple_repeat Simple_repeat 2 49 0 256 297 117 25 chr15 78372020 78372259 -23008262 + L1ME4a LINE L1 4185 4445 -1701 287 266 78 16 chr15 78372375 78372503 -23008018 + L1ME4a LINE L1 4570 4705 -1441 183 80 0 0 chr15 78372553 78372578 -23007943 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 590 238 73 61 chr15 78372580 78372821 -23007700 - MIR SINE MIR -11 251 11 667 312 78 60 chr15 78372887 78372977 -23007544 + L1ME4a LINE L1 4800 4887 -1259 1925 104 29 4 chr15 78372977 78373278 -23007243 - AluSq SINE Alu 0 308 1 667 312 78 60 chr15 78373278 78373618 -23006903 + L1ME4a LINE L1 4887 5240 -906 419 230 284 7 chr15 78373624 78373772 -23006749 + MER53 DNA DNA 1 189 0 859 283 52 42 chr15 78373805 78374310 -23006211 + L1ME4a LINE L1 5269 5778 -343 1542 188 38 0 chr15 78374361 78374533 -23005988 - AluJb SINE Alu -8 304 115 208 0 62 0 chr15 78374533 78374565 -23005956 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1542 188 38 0 chr15 78374565 78374685 -23005836 - AluJb SINE Alu -197 115 1 722 277 30 56 chr15 78374689 78374920 -23005601 - MIR SINE MIR -37 225 1 465 279 44 53 chr15 78374958 78375273 -23005248 + L1ME4a LINE L1 5782 6095 -26 2357 81 0 0 chr15 78375273 78375583 -23004938 - AluY SINE Alu -1 310 1 465 279 44 53 chr15 78375583 78375607 -23004914 + L1ME4a LINE L1 6095 6118 -3 984 254 62 19 chr15 78376343 78376599 -23003922 - MLT1I LTR MaLR -1 408 142 439 300 95 26 chr15 78376921 78377007 -23003514 + MIR SINE MIR 21 100 -162 1810 128 92 21 chr15 78377007 78377308 -23003213 - MER46B DNA MER2_type -2495 236 32 1988 145 3 0 chr15 78377308 78377611 -23002910 - AluSx SINE Alu -8 304 1 1810 128 92 21 chr15 78377611 78377644 -23002877 - MER46B DNA MER2_type -2699 32 3 439 300 95 26 chr15 78377644 78377747 -23002774 + MIR SINE MIR 100 223 -39 241 247 82 14 chr15 78378425 78378498 -23002023 - MER63 DNA MER1_type -15 1047 970 * 609 203 25 8 chr15 78378494 78378612 -23001909 - MER63 DNA MER1_type -310 752 7 416 337 86 57 chr15 78378969 78379519 -23001002 + L2 LINE L2 2668 3227 -86 225 0 0 0 chr15 78379860 78379885 -23000636 + (TC)n Simple_repeat Simple_repeat 1 25 0 391 292 23 31 chr15 78380396 78380526 -22999995 - MIR SINE MIR -63 145 17 2000 148 119 16 chr15 78380626 78381012 -22999509 + MSTB LTR MaLR 1 426 0 180 156 26 52 chr15 78381602 78381679 -22998842 + GA-rich Low_complexity Low_complexity 2 76 0 429 349 19 19 chr15 78381989 78382198 -22998323 + MIR SINE MIR 37 245 -17 526 237 38 114 chr15 78382618 78382935 -22997586 + MLT1I LTR MaLR 106 398 -11 180 0 0 0 chr15 78383669 78383689 -22996832 + (TTC)n Simple_repeat Simple_repeat 2 21 0 1714 154 3 18 chr15 78383691 78383976 -22996545 - AluSx SINE Alu -31 281 1 211 228 119 79 chr15 78384303 78384404 -22996117 - MIR SINE MIR -61 147 43 353 252 59 34 chr15 78384436 78384555 -22995966 + L2 LINE L2 3190 3311 -2 3073 165 18 23 chr15 78385062 78385661 -22994860 - L1MB7 LINE L1 -3 6181 5586 664 199 5 89 chr15 78385910 78386101 -22994420 + MER5A DNA MER1_type 9 183 -6 572 321 151 59 chr15 78387405 78388656 -22991865 - L2 LINE L2 -73 3199 1835 339 361 7 0 chr15 78388656 78388800 -22991721 - L2 LINE L2 -1855 1459 1315 212 371 126 0 chr15 78390225 78390368 -22990153 - L2 LINE L2 -14 3258 3098 802 316 147 47 chr15 78390495 78391348 -22989173 + L2 LINE L2 1837 2774 -540 2437 100 26 40 chr15 78391965 78392345 -22988176 + THE1C LTR MaLR 1 375 0 398 290 102 118 chr15 78392462 78392956 -22987565 + L2 LINE L2 2781 3267 -5 216 163 0 0 chr15 78392959 78393002 -22987519 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 218 305 17 0 chr15 78393048 78393107 -22987414 - L2 LINE L2 -218 3054 2995 3805 159 29 55 chr15 78393118 78393667 -22986854 + L1MB7 LINE L1 5189 5715 -469 2560 133 68 2 chr15 78393667 78394067 -22986454 + MSTB LTR MaLR 1 426 0 3805 159 29 55 chr15 78394067 78394418 -22986103 + L1MB7 LINE L1 5715 6073 -111 901 265 93 19 chr15 78394421 78394745 -22985776 + LTR26 LTR ERV1 1 348 -255 428 330 59 9 chr15 78394883 78395223 -22985298 - L1MC5 LINE L1 -924 6884 6531 334 309 0 21 chr15 78395305 78395399 -22985122 - L1MC4 LINE L1 -1337 6705 6614 279 160 0 0 chr15 78395326 78395401 -22985120 + (TA)n Simple_repeat Simple_repeat 2 76 0 * 375 283 111 102 chr15 78395445 78395760 -22984761 - L1MC4a LINE L1 -1449 6359 6042 6506 107 19 3 chr15 78396429 78397336 -22983185 - HERVL LTR ERVL -646 5008 4088 2394 119 0 20 chr15 78397338 78397692 -22982829 + THE1C LTR MaLR 29 375 0 291 283 68 26 chr15 78397882 78398073 -22982448 - L1MC4a LINE L1 -377 5744 5546 2005 117 0 0 chr15 78398078 78398343 -22982178 - AluSg SINE Alu -45 265 1 357 325 80 20 chr15 78398344 78398594 -22981927 - L1MC4a LINE L1 -2357 3789 3525 226 308 0 0 chr15 78398603 78398668 -22981853 + CT-rich Low_complexity Low_complexity 2 66 0 999 150 27 37 chr15 78399154 78399341 -22981180 + LTR26 LTR ERV1 396 580 -23 681 136 0 0 chr15 78399404 78399507 -22981014 + L1MB7 LINE L1 6073 6175 -9 219 170 21 0 chr15 78401779 78401826 -22978695 + GA-rich Low_complexity Low_complexity 2 49 0 208 271 0 51 chr15 78403321 78403380 -22977141 - MIR SINE MIR -131 77 22 431 278 33 67 chr15 78403932 78404202 -22976319 - L2 LINE L2 -10 3303 3043 205 274 32 0 chr15 78404232 78404294 -22976227 + L2 LINE L2 3001 3064 -208 2578 177 75 4 chr15 78404642 78405163 -22975358 + LTR64 LTR ERVK 1 558 0 2529 69 0 0 chr15 78405381 78405685 -22974836 + AluY SINE Alu 1 304 -7 1631 151 99 3 chr15 78405804 78406088 -22974433 + AluJb SINE Alu 1 311 -1 1496 196 25 0 chr15 78406111 78406387 -22974134 + AluJo SINE Alu 13 295 -17 264 261 99 99 chr15 78406764 78406986 -22973535 + MLT1H LTR MaLR 99 320 -229 1704 144 151 95 chr15 78407089 78407574 -22972947 + MLT2B1 LTR ERVL 1 512 -8 2166 120 23 0 chr15 78408183 78408483 -22972038 - AluSx SINE Alu -5 307 1 685 256 26 31 chr15 78408734 78408961 -22971560 + MIR SINE MIR 2 227 -35 196 176 59 59 chr15 78409655 78409723 -22970798 + L2 LINE L2 2608 2675 -639 264 358 157 22 chr15 78409849 78410218 -22970303 + L2 LINE L2 2843 3261 -11 2002 181 64 18 chr15 78410874 78411345 -22969176 + L1MB2 LINE L1 5721 6156 -15 25 31 0 0 chr15 78411564 78411596 -22968925 + AT_rich Low_complexity Low_complexity 1 32 0 733 241 174 39 chr15 78411866 78412016 -22968505 + MLT1H LTR MaLR 128 256 -293 351 44 0 0 chr15 78412016 78412061 -22968460 + (GA)n Simple_repeat Simple_repeat 1 45 0 733 241 174 39 chr15 78412061 78412271 -22968250 + MLT1H LTR MaLR 256 537 -12 245 200 0 0 chr15 78412280 78412325 -22968196 - MLT1J LTR MaLR -466 45 1 2129 110 10 7 chr15 78412738 78413038 -22967483 + AluSc SINE Alu 1 301 -8 265 281 148 50 chr15 78414105 78414699 -22965822 + L1ME4a LINE L1 4052 4703 -1443 758 153 25 0 chr15 78414708 78414826 -22965695 - LTR12 LTR ERV1 -232 482 362 342 270 0 0 chr15 78414829 78414929 -22965592 - LTR30 LTR ERV1 -98 624 525 1416 128 35 30 chr15 78414929 78415204 -22965317 - LTR12 LTR ERV1 -431 2007 55 270 231 0 0 chr15 78415204 78415256 -22965265 - LTR30 LTR ERV1 -670 52 1 375 314 129 38 chr15 78415938 78416310 -22964211 + L1ME4a LINE L1 5480 5885 -236 195 100 0 0 chr15 78416353 78416383 -22964138 + (TA)n Simple_repeat Simple_repeat 1 30 0 319 150 38 12 chr15 78416410 78416490 -22964031 + L1ME4a LINE L1 6007 6088 -33 2328 96 0 0 chr15 78416844 78417137 -22963384 - AluSx SINE Alu -19 293 1 2123 93 10 58 chr15 78417723 78418036 -22962485 - AluSx SINE Alu -14 298 1 241 204 0 0 chr15 78418289 78418333 -22962188 - MLT2B3 LTR ERVL -4 516 473 5429 128 59 51 chr15 78418340 78419361 -22961160 - MER52C LTR ERV1 0 1278 250 2447 129 22 104 chr15 78419362 78419850 -22960671 - LTR12 LTR ERV1 -234 480 33 546 159 66 0 chr15 78419850 78420030 -22960491 - MER52C LTR ERV1 -987 291 1 344 143 14 0 chr15 78420034 78420104 -22960417 + GA-rich Low_complexity Low_complexity 1 71 0 2163 137 43 174 chr15 78420105 78420690 -22959831 - MLT2B3 LTR ERVL -46 508 1 205 314 159 25 chr15 78421165 78421636 -22958885 - L2 LINE L2 -785 2529 1996 857 235 15 20 chr15 78421723 78421927 -22958594 + MER58A DNA MER1_type 22 224 0 181 280 55 99 chr15 78421934 78421992 -22958529 - L2 LINE L2 -1475 1839 1780 2092 131 0 0 chr15 78421992 78422282 -22958239 - AluSx SINE Alu -10 302 13 181 280 55 99 chr15 78422282 78422748 -22957773 - L2 LINE L2 -1534 1780 1338 2001 188 34 57 chr15 78423240 78423394 -22957127 - L1MB8 LINE L1 0 6178 6025 9542 194 67 51 chr15 78423394 78424341 -22956180 - L1MD3 LINE L1 -748 5398 4467 2374 148 5 12 chr15 78424341 78424767 -22955754 - L1PA13 LINE L1 -7 6156 5734 9542 194 67 51 chr15 78424767 78426655 -22953866 - L1MD3 LINE L1 -1679 4467 3107 2800 204 22 54 chr15 78426651 78427375 -22953146 - L1MB8 LINE L1 -1192 4954 4254 * 13742 22 3 1 chr15 78427866 78430228 -22950293 - L1PA4 LINE L1 0 6155 3798 4371 233 29 55 chr15 78430999 78432784 -22947737 - L1PA12 LINE L1 -4523 3051 7 209 286 0 60 chr15 78432945 78433029 -22947492 - L3 LINE CR1 -208 1369 1291 895 258 94 57 chr15 78433218 78433661 -22946860 - L1MC4a LINE L1 -369 5752 5519 2341 39 0 14 chr15 78433721 78434005 -22946516 + L1PA7 LINE L1 5845 6124 -30 589 238 39 70 chr15 78434005 78434320 -22946201 + MER97a DNA MER1_type? 96 450 -603 3344 141 18 13 chr15 78434320 78434452 -22946069 - LTR38 LTR ERV1 0 556 426 2439 104 10 36 chr15 78434452 78434837 -22945684 - THE1C LTR MaLR 0 375 1 3344 141 18 13 chr15 78434837 78435257 -22945264 - LTR38 LTR ERV1 -130 426 1 405 375 30 8 chr15 78435390 78435657 -22944864 - L3 LINE CR1 -755 822 550 258 140 194 21 chr15 78435700 78435793 -22944728 - L1ME4a LINE L1 -18 6103 5995 2011 153 0 3 chr15 78435793 78436093 -22944428 - AluSx SINE Alu -11 301 3 1352 165 112 3 chr15 78436137 78436422 -22944099 + MER33 DNA MER1_type 3 318 -6 985 248 144 19 chr15 78436615 78437038 -22943483 + MLT1K LTR MaLR 1 476 0 268 222 56 11 chr15 78437493 78437583 -22942938 - L1ME4a LINE L1 -239 5882 5789 29 28 0 0 chr15 78438381 78438417 -22942104 + AT_rich Low_complexity Low_complexity 1 36 0 201 170 21 117 chr15 78438670 78438764 -22941757 - MIR SINE MIR 0 262 178 284 233 23 101 chr15 78439832 78439961 -22940560 - MIR3 SINE MIR -1 207 89 1747 204 67 3 chr15 78441787 78442130 -22938391 - MLT1A1 LTR MaLR 0 365 1 402 304 48 86 chr15 78442327 78442522 -22937999 - MER102b DNA MER1_type -1117 311 130 1638 103 0 0 chr15 78442522 78442761 -22937760 + AluSc SINE Alu 76 314 0 402 304 48 86 chr15 78442761 78442877 -22937644 - MER102b DNA MER1_type -1298 130 11 221 240 42 21 chr15 78443570 78443666 -22936855 + (TATATG)n Simple_repeat Simple_repeat 3 100 0 518 252 131 31 chr15 78443816 78444038 -22936483 - L1ME4a LINE L1 -312 5809 5566 1357 247 138 30 chr15 78444538 78445069 -22935452 - MLT1E LTR MaLR -3 590 3 1848 140 46 7 chr15 78445206 78445491 -22935030 - AluJo SINE Alu -16 296 1 287 159 246 29 chr15 78445435 78445504 -22935017 - AluJ/FLAM SINE Alu -233 69 1 430 248 64 13 chr15 78446492 78446508 -22934013 - L1MA10 LINE L1 0 6334 6319 2101 201 40 110 chr15 78446508 78446776 -22933745 - L1ME1 LINE L1 -5 6161 5876 358 43 0 0 chr15 78446776 78446822 -22933699 + MADE1 DNA Mariner 35 80 0 2101 201 40 110 chr15 78446822 78447228 -22933293 - L1ME1 LINE L1 -290 5876 5492 413 259 233 16 chr15 78447420 78447613 -22932908 + MIR SINE MIR 18 252 -10 244 130 43 0 chr15 78447742 78447788 -22932733 - L1ME4a LINE L1 -4 6117 6070 2559 62 0 10 chr15 78447880 78448189 -22932332 + AluY SINE Alu 1 306 -5 258 296 75 51 chr15 78448520 78448773 -22931748 + L1MEd LINE L1 574 832 -5287 319 319 103 29 chr15 78449086 78449290 -22931231 + L2 LINE L2 2641 2859 -455 305 309 81 73 chr15 78449487 78449872 -22930649 - MLT1K LTR MaLR -11 577 190 44 0 0 0 chr15 78450048 78450092 -22930429 + AT_rich Low_complexity Low_complexity 1 44 0 202 236 247 22 chr15 78454245 78454334 -22926187 - MER91C DNA MER1_type 0 140 32 180 0 0 0 chr15 78454671 78454691 -22925830 + (CAAAG)n Simple_repeat Simple_repeat 1 20 0 467 243 11 73 chr15 78454864 78455041 -22925480 - L2 LINE L2 0 3313 3148 722 281 82 75 chr15 78456322 78456670 -22923851 - MLT1H LTR MaLR 0 549 194 2421 66 0 10 chr15 78456670 78456974 -22923547 - AluY SINE Alu -10 301 1 722 281 82 75 chr15 78456974 78457162 -22923359 - MLT1H LTR MaLR -355 194 9 198 167 250 19 chr15 78457491 78457599 -22922922 - L3 LINE CR1 -231 1346 1214 322 275 84 70 chr15 78458017 78458159 -22922362 - L2 LINE L2 0 3272 3129 204 283 88 9 chr15 78458306 78458419 -22922102 - MIR SINE MIR -32 230 109 817 190 0 18 chr15 78458472 78458635 -22921886 + L1M2 LINE L1 5037 5196 -950 1613 134 61 8 chr15 78458672 78459012 -22921509 + L1M2 LINE L1 5172 5538 -744 246 309 118 18 chr15 78459364 78459715 -22920806 - L1MC/D LINE L1 -646 5912 5690 295 116 0 0 chr15 78460241 78460284 -22920237 + MLT1F LTR MaLR 497 539 -3 309 359 26 20 chr15 78460343 78460538 -22919983 - L1MC/D LINE L1 -2499 4041 3846 191 175 0 88 chr15 78462597 78462654 -22917867 - L3 LINE CR1 -19 1558 1507 356 324 90 44 chr15 78463651 78464083 -22916438 + MARNA DNA Mariner 62 513 -73 2280 248 67 31 chr15 78464759 78465631 -22914890 - L1MC/D LINE L1 -4268 2272 1370 1049 233 20 16 chr15 78465631 78465880 -22914641 + MLT1C LTR MaLR 212 461 -6 489 48 32 16 chr15 78466363 78466426 -22914095 - AluY SINE Alu -222 89 26 282 285 152 54 chr15 78466433 78466710 -22913811 - L1ME LINE L1 -357 5764 5461 22 56 0 0 chr15 78467146 78467182 -22913339 + AT_rich Low_complexity Low_complexity 1 36 0 1347 93 6 0 chr15 78467182 78467364 -22913157 + AluY SINE Alu 127 309 -2 314 266 115 18 chr15 78471529 78471642 -22908879 + L2 LINE L2 3149 3272 0 266 304 87 91 chr15 78472387 78472486 -22908035 + L2 LINE L2 3044 3142 -130 1152 291 77 19 chr15 78472486 78473005 -22907516 + MLT1H LTR MaLR 1 549 0 266 304 87 91 chr15 78473005 78473135 -22907386 + L2 LINE L2 3142 3272 0 554 274 32 43 chr15 78474252 78474438 -22906083 + L2 LINE L2 3126 3309 -4 309 250 83 21 chr15 78474952 78475048 -22905473 - MER91C DNA MER1_type -37 103 2 1854 210 20 12 chr15 78475218 78475627 -22904894 - L1M4c LINE L1 -4627 1757 1346 465 290 17 23 chr15 78475645 78475821 -22904700 + HAL1 LINE L1 2325 2499 -8 1413 253 195 9 chr15 78475845 78476394 -22904127 + L1MC4a LINE L1 5324 5974 -1834 487 252 238 0 chr15 78477025 78477231 -22903290 + Charlie2 DNA MER1_type 5 259 -2603 677 288 98 53 chr15 78477302 78478202 -22902319 - L1ME LINE L1 -675 5491 4633 601 244 24 0 chr15 78478202 78478329 -22902192 - FLAM_A SINE Alu -2 131 2 677 288 98 53 chr15 78478329 78478523 -22901998 - L1ME LINE L1 -1533 4633 4449 1279 278 58 59 chr15 78478523 78479113 -22901408 + MLT1G LTR MaLR 2 590 0 677 288 98 53 chr15 78479113 78479211 -22901310 - L1ME LINE L1 -1717 4449 4253 679 238 47 6 chr15 78479223 78479395 -22901126 - MER58A DNA MER1_type 0 224 46 800 168 10 64 chr15 78479521 78479723 -22900798 + MER106A DNA MER1_type 35 225 -11 1554 249 56 20 chr15 78480287 78480696 -22899825 + REP3 LTR ERV 1 424 -138 618 273 48 34 chr15 78480792 78481191 -22899330 - MLT1E LTR MaLR -171 455 74 5211 228 62 24 chr15 78481191 78482697 -22897824 + L1MB7 LINE L1 2785 4347 -1799 2491 207 33 7 chr15 78482694 78483264 -22897257 + L1MB7 LINE L1 4706 5290 -856 * 2228 187 19 30 chr15 78483261 78483314 -22897207 + L1MB7 LINE L1 5699 5751 -433 * 1495 209 99 58 chr15 78483314 78483798 -22896723 + MLT1D LTR MaLR 1 504 -1 2228 187 19 30 chr15 78483798 78484215 -22896306 + L1MB7 LINE L1 5751 6164 -20 552 187 9 9 chr15 78484222 78484329 -22896192 - MLT1E LTR MaLR -458 109 3 319 290 145 0 chr15 78484464 78484657 -22895864 + L1MCa LINE L1 1444 1664 -4762 1277 159 47 12 chr15 78484661 78484777 -22895744 + L1MD3 LINE L1 7730 7840 -155 1699 100 5 0 chr15 78484777 78484997 -22895524 + AluSp SINE Alu 82 302 -11 1277 159 47 12 chr15 78484997 78485137 -22895384 + L1MD3 LINE L1 7840 7995 0 258 294 188 39 chr15 78485119 78485657 -22894864 + L1MCa LINE L1 1826 2443 -4164 * 527 275 107 68 chr15 78485668 78486059 -22894462 - L1ME LINE L1 -2094 4052 3633 2797 97 17 6 chr15 78486059 78486419 -22894102 - THE1B LTR MaLR 0 364 1 527 275 107 68 chr15 78486419 78486569 -22893952 - L1ME LINE L1 -2513 3633 3490 2654 233 110 34 chr15 78486588 78487377 -22893144 + MER21B LTR ERV1 15 863 0 316 291 85 34 chr15 78487377 78487931 -22892590 - L1ME LINE L1 -2652 3494 2913 699 244 111 44 chr15 78487943 78488213 -22892308 - L1ME3A LINE L1 -1 6169 5882 951 252 35 10 chr15 78488215 78488505 -22892016 - L1ME3A LINE L1 -200 5970 5674 2062 163 28 63 chr15 78489637 78490066 -22890455 + MLT2D LTR ERVL 1 414 0 257 204 0 0 chr15 78490649 78490698 -22889823 + MER58 DNA MER1_type 2372 2420 0 2465 64 0 3 chr15 78491367 78491665 -22888856 + AluY SINE Alu 1 297 -14 252 224 0 0 chr15 78492506 78492573 -22887948 + (TA)n Simple_repeat Simple_repeat 1 67 0 225 323 32 0 chr15 78493529 78493622 -22886899 - MIR3 SINE MIR -3 205 110 529 110 123 18 chr15 78493699 78493806 -22886715 + L1PB1 LINE L1 5840 5939 -212 231 36 0 0 chr15 78493810 78493838 -22886683 + (CAA)n Simple_repeat Simple_repeat 2 29 0 264 59 0 0 chr15 78494045 78494079 -22886442 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2086 110 0 3 chr15 78494081 78494363 -22886158 - AluSx SINE Alu -31 281 1 3963 121 67 14 chr15 78494993 78495574 -22884947 + LTR9 LTR ERV1 1 612 0 14769 120 111 125 chr15 78495579 78498884 -22881637 + HUERS-P3b LTR ERV1 5 3344 -4074 2312 110 0 7 chr15 78498884 78499192 -22881329 - AluSg SINE Alu -4 306 1 14769 120 111 125 chr15 78499192 78500123 -22880398 + HUERS-P3b LTR ERV1 3344 4286 -3132 207 0 0 0 chr15 78500555 78500578 -22879943 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2501 67 3 3 chr15 78501435 78501748 -22878773 - AluSp SINE Alu 0 313 1 42 65 0 0 chr15 78501973 78502050 -22878471 + AT_rich Low_complexity Low_complexity 1 77 0 21 0 0 0 chr15 78503065 78503086 -22877435 + AT_rich Low_complexity Low_complexity 1 21 0 577 286 92 35 chr15 78503832 78503899 -22876622 - L1ME3A LINE L1 -289 5881 5819 2441 61 3 13 chr15 78503899 78504211 -22876310 - AluY SINE Alu -2 309 1 577 286 92 35 chr15 78504211 78504426 -22876095 - L1ME3A LINE L1 -351 5819 5583 443 300 90 10 chr15 78504446 78504646 -22875875 - MLT1L LTR MaLR -221 394 179 1036 190 37 23 chr15 78504665 78504881 -22875640 - MER20 DNA MER1_type 0 219 1 264 227 67 113 chr15 78506046 78506118 -22874403 + MIR SINE MIR 13 87 -175 1959 137 59 14 chr15 78506118 78506475 -22874046 - THE1C LTR MaLR 0 375 3 264 227 67 113 chr15 78506475 78506596 -22873925 + MIR SINE MIR 87 197 -65 212 225 0 42 chr15 78506722 78506793 -22873728 - MIR SINE MIR 0 262 195 * 938 296 159 7 chr15 78506782 78507682 -22872839 - L2 LINE L2 0 3313 2267 345 155 84 0 chr15 78507784 78507855 -22872666 - MIR SINE MIR -73 189 113 1987 163 44 14 chr15 78508033 78508396 -22872125 + MSTB1 LTR MaLR 57 430 -2 570 219 55 96 chr15 78509665 78509884 -22870637 - MER63A DNA MER1_type 0 210 1 1002 196 0 0 chr15 78510101 78510285 -22870236 + MER5A DNA MER1_type 6 189 0 6996 137 12 12 chr15 78510495 78511673 -22868848 + L1MA3 LINE L1 4773 5955 -350 2144 120 0 7 chr15 78511673 78512003 -22868518 + AluSx SINE Alu 1 328 0 6996 137 12 12 chr15 78512003 78512355 -22868166 + L1MA3 LINE L1 5955 6305 0 180 351 66 26 chr15 78512458 78512609 -22867912 - L2 LINE L2 0 3272 3116 419 263 6 75 chr15 78512668 78512828 -22867693 - MIR3 SINE MIR -39 169 21 2140 111 7 0 chr15 78513004 78513292 -22867229 + AluSc SINE Alu 5 294 -15 227 286 65 13 chr15 78513906 78513983 -22866538 + MIR SINE MIR 17 97 -165 2335 179 43 71 chr15 78515574 78516204 -22864317 - LTR9 LTR ERV1 0 612 1 432 301 91 6 chr15 78516528 78516704 -22863817 - MIR SINE MIR -5 257 67 1017 202 211 6 chr15 78517947 78518288 -22862233 - HsTC2 DNA Tc2 -77 1821 1235 225 263 276 0 chr15 78518327 78518403 -22862118 - HsTC2 DNA Tc2 -1799 99 3 253 221 286 0 chr15 78518423 78518500 -22862021 + MIR SINE MIR 162 260 -2 3030 112 4 2 chr15 78518635 78519090 -22861431 + L1PA8A LINE L1 4878 5333 -813 2073 118 3 3 chr15 78519090 78519386 -22861135 + AluSx SINE Alu 1 296 -16 1301 122 0 0 chr15 78519410 78519590 -22860931 + AluSg/x SINE Alu 131 310 -2 4767 55 10 3 chr15 78519597 78520194 -22860327 + L1PA8A LINE L1 5314 5914 -217 3372 82 11 7 chr15 78520194 78520624 -22859897 + L1PA8A LINE L1 5677 6128 -3 2631 153 18 2 chr15 78520624 78521065 -22859456 + L1MC1 LINE L1 5880 6332 -1 1676 178 53 60 chr15 78521067 78521517 -22859004 + L1MC4 LINE L1 7596 8042 0 324 296 11 0 chr15 78522039 78522127 -22858394 + MIR SINE MIR 40 128 -134 463 284 37 32 chr15 78522371 78522561 -22857960 + MIR SINE MIR 22 212 -50 423 56 0 0 chr15 78522602 78522656 -22857865 + (TA)n Simple_repeat Simple_repeat 1 54 0 643 276 70 13 chr15 78527490 78527718 -22852803 - MIR SINE MIR 0 262 22 276 199 16 57 chr15 78529205 78529293 -22851228 - MIR SINE MIR -62 146 100 2237 111 0 19 chr15 78529741 78530056 -22850465 + AluSc SINE Alu 1 309 0 2333 100 7 0 chr15 78530071 78530371 -22850150 + AluSp SINE Alu 3 304 -9 186 133 0 0 chr15 78530478 78530508 -22850013 + (A)n Simple_repeat Simple_repeat 1 30 0 363 262 131 0 chr15 78530990 78531112 -22849409 + MIR3 SINE MIR 53 190 -18 233 340 64 0 chr15 78532200 78532294 -22848227 + L2 LINE L2 3164 3263 -9 21 36 0 0 chr15 78532632 78532660 -22847861 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr15 78533298 78533325 -22847196 + GC_rich Low_complexity Low_complexity 1 27 0 219 88 0 0 chr15 78533340 78533374 -22847147 + (GGA)n Simple_repeat Simple_repeat 1 34 0 195 208 75 38 chr15 78534889 78534942 -22845579 - L2 LINE L2 -251 3062 3008 264 30 0 0 chr15 78535208 78535241 -22845280 + (GA)n Simple_repeat Simple_repeat 2 34 0 228 35 0 0 chr15 78537019 78537048 -22843473 + (TG)n Simple_repeat Simple_repeat 2 30 0 313 260 0 0 chr15 78538019 78538092 -22842429 - HsTC2 DNA Tc2 -3 1895 1823 30 27 0 0 chr15 78538179 78538216 -22842305 + AT_rich Low_complexity Low_complexity 1 37 0 4121 116 11 11 chr15 78538221 78538853 -22841668 - L1MC1 LINE L1 0 6333 5702 506 281 132 54 chr15 78538859 78539848 -22840673 - L2 LINE L2 -16 3297 2245 621 82 27 0 chr15 78540074 78540184 -22840337 + (TCTA)n Simple_repeat Simple_repeat 2 114 0 368 322 43 93 chr15 78540371 78540694 -22839827 + L2 LINE L2 2966 3272 0 23 0 0 0 chr15 78540987 78541010 -22839511 + AT_rich Low_complexity Low_complexity 1 23 0 538 266 159 36 chr15 78541708 78542148 -22838373 - L1ME4a LINE L1 -28 6093 5600 1166 128 15 31 chr15 78543495 78543691 -22836830 + MER20 DNA MER1_type 27 219 0 353 314 79 74 chr15 78544773 78545244 -22835277 - L2 LINE L2 -539 2775 2303 347 241 13 0 chr15 78545317 78545396 -22835125 + L2 LINE L2 3234 3313 0 2063 230 43 52 chr15 78545488 78545940 -22834581 - L1MC4 LINE L1 -1 8041 7595 180 97 0 0 chr15 78545940 78545971 -22834550 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2063 230 43 52 chr15 78545971 78546127 -22834394 - L1MC4 LINE L1 -447 7595 7439 455 237 17 12 chr15 78546808 78546981 -22833540 + CT-rich Low_complexity Low_complexity 1 174 0 183 311 16 0 chr15 78547130 78547191 -22833330 - L2 LINE L2 -25 3247 3186 330 284 85 21 chr15 78547241 78547382 -22833139 + MIR SINE MIR 110 259 -3 402 284 9 18 chr15 78548193 78548302 -22832219 - L2 LINE L2 0 3272 3165 627 179 74 49 chr15 78548440 78548602 -22831919 - MER5A DNA MER1_type 0 189 24 353 257 20 13 chr15 78549484 78549515 -22831006 + (TA)n Simple_repeat Simple_repeat 1 30 -123 1581 184 126 8 chr15 78549515 78549889 -22830632 + MER47B DNA MER2_type 1 418 0 353 257 20 13 chr15 78549889 78550009 -22830512 + (TA)n Simple_repeat Simple_repeat 30 153 0 3401 117 28 2 chr15 78550215 78550721 -22829800 + L1PB3 LINE L1 5636 6154 0 314 136 0 17 chr15 78550722 78550781 -22829740 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 659 281 72 51 chr15 78551234 78551913 -22828608 + L1MEd LINE L1 922 1669 -4641 454 278 85 52 chr15 78552320 78552568 -22827953 + MIR SINE MIR 5 260 -2 288 111 0 0 chr15 78553073 78553118 -22827403 + (GA)n Simple_repeat Simple_repeat 1 45 0 613 239 59 67 chr15 78553124 78553362 -22827159 - MLT1K LTR MaLR 0 588 353 443 304 58 24 chr15 78553424 78553631 -22826890 - MLT1K LTR MaLR -372 216 3 207 0 0 0 chr15 78554625 78554648 -22825873 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr15 78554663 78554686 -22825835 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr15 78554873 78554896 -22825625 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 857 135 0 8 chr15 78554897 78555023 -22825498 - L1PA8A LINE L1 -12 6119 5995 1603 150 7 44 chr15 78555083 78555405 -22825116 + AluJo SINE Alu 1 311 0 1663 204 32 27 chr15 78556047 78556419 -22824102 - MLT1A2 LTR MaLR 0 374 1 330 373 83 24 chr15 78556953 78557205 -22823316 - L3 LINE CR1 0 1577 1311 2849 221 81 20 chr15 78558407 78559144 -22821377 + MER21B LTR ERV1 1 782 -81 1629 197 49 12 chr15 78561634 78561959 -22818562 + MER58B DNA MER1_type 1 337 -4 2053 88 0 44 chr15 78562543 78562915 -22817606 - AluSx SINE Alu 0 359 1 4252 135 16 2 chr15 78562973 78563617 -22816904 - MER39B LTR ERV1 0 653 1 313 322 7 20 chr15 78563947 78564096 -22816425 + GA-rich Low_complexity Low_complexity 1 147 0 205 176 0 0 chr15 78565117 78565151 -22815370 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 351 0 0 0 chr15 78567239 78567278 -22813243 + (CA)n Simple_repeat Simple_repeat 2 40 0 1669 125 0 4 chr15 78568026 78568274 -22812247 - AluSg SINE Alu -32 278 32 266 244 138 16 chr15 78568808 78568931 -22811590 - L1ME4a LINE L1 -213 5908 5771 228 229 141 77 chr15 78569069 78569239 -22811282 - L3 LINE CR1 -264 1313 1133 195 361 48 12 chr15 78570141 78570224 -22810297 - MIR SINE MIR -92 116 31 232 283 104 61 chr15 78571628 78571858 -22808663 + L2 LINE L2 3032 3271 -1 510 304 107 19 chr15 78572399 78572772 -22807749 - L2 LINE L2 -219 3053 2632 247 276 216 23 chr15 78572947 78573248 -22807273 - L2 LINE L2 -1202 2112 1754 390 104 56 16 chr15 78573648 78573773 -22806748 + (TG)n Simple_repeat Simple_repeat 2 131 0 390 139 52 17 chr15 78573856 78574029 -22806492 + (TG)n Simple_repeat Simple_repeat 1 179 0 297 129 79 7 chr15 78574056 78574196 -22806325 + (TG)n Simple_repeat Simple_repeat 2 151 0 326 171 38 21 chr15 78574289 78574534 -22805987 + (TG)n Simple_repeat Simple_repeat 1 249 0 193 180 42 24 chr15 78574557 78574724 -22805797 + (TG)n Simple_repeat Simple_repeat 2 171 0 330 132 37 29 chr15 78574739 78574875 -22805646 + (TG)n Simple_repeat Simple_repeat 2 138 0 753 216 62 6 chr15 78575340 78575502 -22805019 - MIR SINE MIR -10 252 82 385 277 52 12 chr15 78575620 78575736 -22804785 - MIR SINE MIR -62 146 70 376 315 112 11 chr15 78575912 78576090 -22804431 + MIR SINE MIR 61 256 -6 192 301 158 7 chr15 78576111 78576257 -22804264 - L3 LINE CR1 -151 1426 1259 370 187 36 96 chr15 78576292 78576458 -22804063 - L1ME4a LINE L1 -11 6110 5955 198 0 0 0 chr15 78576458 78576480 -22804041 + (CA)n Simple_repeat Simple_repeat 2 23 0 304 326 68 7 chr15 78577185 78577332 -22803189 + L1M4 LINE L1 3900 4055 -2091 303 338 132 15 chr15 78577369 78577573 -22802948 - MIR SINE MIR -5 257 30 244 266 32 21 chr15 78577601 78577695 -22802826 + L1M4 LINE L1 4103 4197 -1949 2272 50 0 7 chr15 78578018 78578334 -22802187 + AluY SINE Alu 1 314 0 355 263 69 44 chr15 78578390 78578550 -22801971 + MER103 DNA DNA 3 166 0 191 273 65 13 chr15 78580022 78580099 -22800422 - MIR SINE MIR -93 115 35 1048 75 12 0 chr15 78580939 78581099 -22799422 + (CCAA)n Simple_repeat Simple_repeat 2 163 0 846 159 0 0 chr15 78582254 78582386 -22798135 - FLAM_C SINE Alu 0 133 2 497 189 36 45 chr15 78584907 78585018 -22795503 - MER81 DNA DNA -4 110 1 653 130 0 0 chr15 78687664 78687756 -22692765 + U6 snRNA snRNA 1 92 -15 1643 181 0 7 chr15 78688361 78688637 -22691884 - AluJb SINE Alu -38 274 1 627 299 76 5 chr15 78688686 78688910 -22691611 - MIR SINE MIR -5 257 18 234 279 98 0 chr15 78689276 78689337 -22691184 - L2 LINE L2 -3 3269 3203 880 29 0 0 chr15 78689360 78689462 -22691059 - AluY SINE Alu -209 102 1 545 199 205 12 chr15 78689742 78689908 -22690613 + MIR SINE MIR 16 213 -49 246 346 125 0 chr15 78691032 78691136 -22689385 + L2 LINE L2 3147 3263 -9 389 323 129 0 chr15 78691162 78691348 -22689173 - L3 LINE CR1 -354 1223 1014 860 251 40 52 chr15 78691444 78691779 -22688742 - Tigger8 DNA MER2_type -85 581 249 2002 128 35 0 chr15 78691779 78692067 -22688454 - AluSx SINE Alu -14 298 1 338 240 60 10 chr15 78692248 78692348 -22688173 - Tigger8 DNA MER2_type -423 243 139 244 204 0 23 chr15 78692363 78692407 -22688114 + MER57A LTR ERV1 295 337 -66 2091 142 0 16 chr15 78692699 78693016 -22687505 - AluSx SINE Alu 0 312 1 1796 185 0 7 chr15 78694179 78694481 -22686040 - AluJb SINE Alu -12 300 1 810 282 91 42 chr15 78694647 78695020 -22685501 - HAL1 LINE L1 -697 1810 1457 2510 70 0 0 chr15 78695020 78695318 -22685203 + AluSx SINE Alu 1 298 -14 810 282 91 42 chr15 78695318 78695695 -22684826 - HAL1 LINE L1 -1050 1457 959 313 287 44 29 chr15 78695847 78695983 -22684538 + MIR SINE MIR 124 261 -1 966 176 0 4 chr15 78696372 78696588 -22683933 + AluJb SINE Alu 2 303 -9 1479 176 52 11 chr15 78696607 78696731 -22683790 + AluJo SINE Alu 1 119 -193 342 0 0 0 chr15 78696731 78696769 -22683752 + (CA)n Simple_repeat Simple_repeat 1 38 0 1479 176 52 11 chr15 78696769 78696916 -22683605 + AluJo SINE Alu 119 283 -29 21 71 0 0 chr15 78696916 78696958 -22683563 + AT_rich Low_complexity Low_complexity 1 42 0 253 342 58 50 chr15 78696981 78697101 -22683420 - L2 LINE L2 -8 3264 3144 418 315 196 31 chr15 78697102 78697362 -22683159 - L2 LINE L2 -383 2931 2715 1821 168 10 3 chr15 78697362 78697672 -22682849 + AluJb SINE Alu 1 312 0 418 315 196 31 chr15 78697672 78698014 -22682507 - L2 LINE L2 -599 2715 2230 1903 162 7 3 chr15 78698075 78698384 -22682137 + AluJo SINE Alu 1 310 -2 2069 86 62 3 chr15 78698536 78698826 -22681695 + AluY SINE Alu 3 309 -2 840 160 0 42 chr15 78698939 78699083 -22681438 - FLAM_C SINE Alu -4 139 2 1757 95 16 92 chr15 78699114 78699429 -22681092 + AluSq SINE Alu 22 312 -1 4719 147 31 7 chr15 78700326 78701090 -22679431 + LTR39 LTR ERV1 1 783 0 4506 162 31 28 chr15 78702501 78703317 -22677204 + LTR1B LTR ERV1 9 826 0 1020 197 113 72 chr15 78703323 78703713 -22676808 + MLT1C LTR MaLR 60 465 -2 546 238 87 87 chr15 78703752 78703812 -22676709 - MIR SINE MIR 0 262 203 1647 201 0 10 chr15 78703812 78704126 -22676395 - AluJo SINE Alu -1 311 1 546 238 87 87 chr15 78704126 78704317 -22676204 - MIR SINE MIR -58 204 11 21 0 0 0 chr15 78704477 78704498 -22676023 + AT_rich Low_complexity Low_complexity 1 21 0 804 143 0 0 chr15 78704505 78704624 -22675897 - FRAM SINE Alu -31 145 27 1578 175 3 19 chr15 78704759 78705067 -22675454 - AluJo SINE Alu -9 303 1 1608 146 4 0 chr15 78705075 78705345 -22675176 - AluSx SINE Alu 0 308 38 1085 152 50 20 chr15 78705384 78705582 -22674939 - LTR56 LTR ERV1 -238 207 4 286 258 13 76 chr15 78705949 78706114 -22674407 + MER21A LTR ERV1 1 152 -711 1395 184 150 10 chr15 78706205 78706498 -22674023 + MER21B LTR ERV1 144 477 -386 759 134 0 79 chr15 78706498 78706619 -22673902 + MER4A LTR ERV1 1 107 -557 4351 83 2 2 chr15 78706619 78707173 -22673348 + MER41A LTR ERV1 1 554 0 759 134 0 79 chr15 78707173 78707215 -22673306 + MER4A LTR ERV1 107 151 -513 2005 102 8 37 chr15 78707219 78707591 -22672930 + MER4A LTR ERV1 245 664 0 1587 156 31 8 chr15 78707608 78707865 -22672656 + MER21B LTR ERV1 510 772 -91 452 138 0 25 chr15 78707920 78708000 -22672521 + MER21B LTR ERV1 786 863 0 194 366 134 18 chr15 78708036 78708312 -22672209 + L2 LINE L2 2514 2821 -493 3002 129 40 51 chr15 78708327 78708941 -22671580 + MER4B LTR ERV1 1 779 0 2223 143 36 13 chr15 78709040 78709419 -22671102 + MER57A LTR ERV1 1 389 -10 2290 84 7 0 chr15 78709419 78709729 -22670792 - AluSp SINE Alu -1 312 1 3277 153 20 38 chr15 78709928 78710009 -22670512 - MER41B LTR ERV1 -38 597 516 2211 84 3 34 chr15 78710009 78710332 -22670189 + AluSp SINE Alu 1 313 0 3277 153 20 38 chr15 78710332 78710858 -22669663 - MER41B LTR ERV1 -119 516 1 191 189 81 0 chr15 78710982 78711019 -22669502 + L2 LINE L2 3016 3055 -258 1546 176 0 21 chr15 78711433 78711723 -22668798 + AluJo SINE Alu 5 288 -24 356 280 25 51 chr15 78711829 78711879 -22668642 - MER5B DNA MER1_type -63 115 65 1962 143 140 29 chr15 78711879 78712264 -22668257 - MSTA LTR MaLR 0 428 1 356 280 25 51 chr15 78712264 78712331 -22668190 - MER5B DNA MER1_type -113 65 1 209 285 70 59 chr15 78712353 78712539 -22667982 - L2 LINE L2 -1497 1817 1630 813 188 12 0 chr15 78712591 78712756 -22667765 - FRAM SINE Alu -9 167 1 255 303 76 8 chr15 78712938 78713070 -22667451 - L1ME4a LINE L1 -16 6105 5965 306 309 43 91 chr15 78713127 78713337 -22667184 + L3 LINE CR1 964 1163 -414 931 272 110 64 chr15 78714133 78714651 -22665870 - MLT1F LTR MaLR 0 542 1 2307 94 0 0 chr15 78714693 78715002 -22665519 - AluY SINE Alu -2 309 1 630 278 33 33 chr15 78715136 78715204 -22665317 + MIR SINE MIR 50 117 -145 2162 154 34 17 chr15 78715204 78715562 -22664959 + THE1B LTR MaLR 1 364 0 630 278 33 33 chr15 78715562 78715705 -22664816 + MIR SINE MIR 116 261 -1 372 263 294 12 chr15 78715865 78716025 -22664496 - MIR SINE MIR -11 251 47 353 242 186 57 chr15 78716180 78716304 -22664217 - MIR SINE MIR -108 154 15 187 171 24 24 chr15 78716389 78716430 -22664091 + L2 LINE L2 3265 3305 -8 2455 185 59 10 chr15 78716947 78717438 -22663083 - MLT2B2 LTR ERVL 0 515 1 228 290 40 30 chr15 78717519 78717619 -22662902 + L2 LINE L2 3163 3263 -9 1875 148 7 0 chr15 78717710 78718000 -22662521 + AluSx SINE Alu 7 298 -14 30 45 0 0 chr15 78718026 78718070 -22662451 + AT_rich Low_complexity Low_complexity 1 44 0 2169 157 75 15 chr15 78718268 78718670 -22661851 + MSTA LTR MaLR 1 426 -2 867 226 129 62 chr15 78718723 78719323 -22661198 - L1ME4a LINE L1 -210 5911 5287 490 165 21 169 chr15 78719393 78719564 -22660957 - L1MC5 LINE L1 -37 7924 7796 1492 204 0 0 chr15 78719564 78719853 -22660668 - AluJb SINE Alu -22 290 2 490 165 21 169 chr15 78719853 78719918 -22660603 - L1MC5 LINE L1 -165 7796 7723 1512 157 82 18 chr15 78719947 78720228 -22660293 - AluJo SINE Alu -13 299 1 392 325 78 41 chr15 78721499 78721960 -22658561 - MLT1J LTR MaLR 0 511 34 1702 187 0 13 chr15 78722112 78722422 -22658099 - AluJb SINE Alu -6 306 1 322 283 142 0 chr15 78722434 78722540 -22657981 - L2 LINE L2 0 3272 3152 180 263 61 101 chr15 78722851 78722950 -22657571 + L2 LINE L2 3168 3262 -10 1575 136 0 0 chr15 78723011 78723231 -22657290 + MER1B DNA MER1_type 1 220 -77 405 141 0 31 chr15 78723239 78723303 -22657218 + MER1B DNA MER1_type 278 339 0 287 303 79 0 chr15 78724190 78724266 -22656255 + L2 LINE L2 3144 3225 -47 2001 136 0 0 chr15 78724356 78724651 -22655870 - AluSx SINE Alu -17 295 1 183 80 0 0 chr15 78724704 78724729 -22655792 + (A)n Simple_repeat Simple_repeat 1 25 0 718 178 16 8 chr15 78724919 78725048 -22655473 + FLAM_A SINE Alu 1 130 -3 234 0 0 0 chr15 78726188 78726214 -22654307 + (CGG)n Simple_repeat Simple_repeat 2 27 0 29 0 0 0 chr15 78726288 78726317 -22654204 + GC_rich Low_complexity Low_complexity 1 29 0 200 247 19 62 chr15 78726337 78726499 -22654022 + (CCCG)n Simple_repeat Simple_repeat 1 155 0 207 0 0 0 chr15 78726500 78726523 -22653998 + (CAGC)n Simple_repeat Simple_repeat 3 25 0 229 250 10 10 chr15 78726683 78726779 -22653742 + (CCG)n Simple_repeat Simple_repeat 2 97 0 21 0 0 0 chr15 78726785 78726806 -22653715 + GC_rich Low_complexity Low_complexity 1 21 0 336 313 57 28 chr15 78727447 78727623 -22652898 + MIR3 SINE MIR 7 187 -21 181 229 0 0 chr15 78728976 78729011 -22651510 - L3 LINE CR1 -12 1565 1531 452 206 71 92 chr15 78729018 78729184 -22651337 + MER112 DNA MER1_type 3 166 -94 2499 50 0 0 chr15 78729184 78729486 -22651035 - AluY SINE Alu -9 302 1 452 206 71 92 chr15 78729486 78729503 -22651018 + MER112 DNA MER1_type 166 182 -78 317 311 98 0 chr15 78730287 78730419 -22650102 + L2 LINE L2 3165 3309 -4 1858 150 0 10 chr15 78731738 78732045 -22648476 + AluJo SINE Alu 1 304 -8 181 226 38 19 chr15 78732055 78732108 -22648413 - L2 LINE L2 -9 3263 3210 2186 104 0 0 chr15 78732520 78732819 -22647702 + AluSx SINE Alu 2 300 -12 872 128 43 7 chr15 78733361 78733502 -22647019 + AluJo SINE Alu 22 167 -145 399 143 0 0 chr15 78733502 78733565 -22646956 + FLAM SINE Alu 66 128 -5 612 236 148 91 chr15 78734087 78734485 -22646036 - MSTC LTR MaLR -7 421 1 208 296 8 112 chr15 78734489 78734614 -22645907 + MIR3 SINE MIR 90 201 -7 262 184 0 0 chr15 78734689 78734738 -22645783 + MER5B DNA MER1_type 1 49 -129 1603 178 99 3 chr15 78734924 78735227 -22645294 - MER44D DNA MER2_type -6 603 2 583 104 83 10 chr15 78735574 78735670 -22644851 + L1PA3 LINE L1 6048 6150 -5 186 43 0 0 chr15 78735687 78735710 -22644811 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 306 0 0 0 chr15 78736456 78736490 -22644031 + (TG)n Simple_repeat Simple_repeat 1 34 0 305 299 254 6 chr15 78736490 78736667 -22643854 + MIR SINE MIR 17 237 -25 1782 232 111 29 chr15 78738143 78738573 -22641948 - LTR48B LTR ERV1 0 644 150 1325 62 128 43 chr15 78738573 78738784 -22641737 + MER30 DNA MER1_type 1 229 -1 1782 232 111 29 chr15 78738784 78738948 -22641573 - LTR48B LTR ERV1 -494 150 1 302 0 26 0 chr15 78739402 78739440 -22641081 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1847 124 0 4 chr15 78739443 78739709 -22640812 - AluSx SINE Alu -31 281 17 242 304 0 96 chr15 78739753 78739868 -22640653 + L2 LINE L2 3209 3312 -1 360 280 110 34 chr15 78739890 78740008 -22640513 - MER5A DNA MER1_type -5 184 47 226 176 20 0 chr15 78740241 78740292 -22640229 + (TA)n Simple_repeat Simple_repeat 1 52 0 2131 125 0 0 chr15 78740315 78740618 -22639903 + AluSx SINE Alu 1 303 -9 304 339 36 50 chr15 78740652 78740953 -22639568 + L2 LINE L2 592 888 -2426 1875 221 99 107 chr15 78740967 78741853 -22638668 - L2 LINE L2 -9 3304 2415 806 107 38 46 chr15 78741853 78741984 -22638537 - FLAM_C SINE Alu -2 131 2 1875 221 99 107 chr15 78741984 78742173 -22638348 - L2 LINE L2 -898 2415 2226 216 308 64 0 chr15 78743260 78743338 -22637183 + L2 LINE L2 3142 3224 -48 252 0 0 0 chr15 78744463 78744491 -22636030 + (T)n Simple_repeat Simple_repeat 1 28 0 2243 87 0 3 chr15 78744636 78744936 -22635585 + AluSg SINE Alu 1 299 -11 321 362 79 0 chr15 78745412 78745539 -22634982 - HAL1 LINE L1 -2370 137 1 21 0 0 0 chr15 78745548 78745569 -22634952 + AT_rich Low_complexity Low_complexity 1 21 0 2342 193 22 39 chr15 78745603 78746146 -22634375 - L1MA10 LINE L1 -1 6333 5800 236 200 0 0 chr15 78746154 78746194 -22634327 - MER2 DNA MER2_type -24 321 282 * 704 250 71 6 chr15 78746169 78746337 -22634184 - MER8 DNA MER2_type -60 179 1 345 82 0 0 chr15 78746345 78746394 -22634127 + (TG)n Simple_repeat Simple_repeat 2 50 0 1598 141 118 7 chr15 78747149 78747419 -22633102 + AluSq SINE Alu 3 302 -1 817 163 104 0 chr15 78747419 78747554 -22632967 + AluJb SINE Alu 134 282 -30 207 100 0 0 chr15 78747974 78748004 -22632517 + (TTCTCC)n Simple_repeat Simple_repeat 1 30 0 1465 186 28 17 chr15 78748741 78749031 -22631490 - AluJo SINE Alu -14 298 6 279 0 0 0 chr15 78749039 78749070 -22631451 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3968 100 0 14 chr15 78749089 78749607 -22630914 - MER9 LTR ERVK 0 511 1 2366 75 0 43 chr15 78749728 78750050 -22630471 - AluY SINE Alu -3 308 1 362 288 39 43 chr15 78751187 78751386 -22629135 + MIR SINE MIR 10 210 -52 911 107 0 0 chr15 78752015 78752136 -22628385 - AluJb SINE Alu -191 121 1 221 362 43 26 chr15 78752278 78752394 -22628127 + L2 LINE L2 3192 3309 -4 2026 103 35 24 chr15 78753055 78753345 -22627176 + AluSx SINE Alu 1 293 -19 855 147 70 19 chr15 78755076 78755233 -22625288 - L1MB3 LINE L1 0 6183 6019 211 289 77 70 chr15 78755383 78755539 -22624982 - MIR3 SINE MIR -51 157 1 278 267 40 30 chr15 78755645 78755746 -22624775 + MIR3 SINE MIR 98 199 -9 189 200 60 20 chr15 78756332 78756382 -22624139 - MIR SINE MIR -191 71 20 252 226 118 21 chr15 78756515 78756608 -22623913 - MLT1K LTR MaLR -119 469 368 425 306 8 8 chr15 78756635 78756769 -22623752 - MLT1K LTR MaLR -329 259 126 1931 149 0 0 chr15 78757177 78757510 -22623011 - AluJb SINE Alu 0 333 1 32 0 0 0 chr15 78757809 78757841 -22622680 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr15 78759751 78759772 -22620749 + AT_rich Low_complexity Low_complexity 1 21 0 345 231 0 0 chr15 78762087 78762152 -22618369 - L2 LINE L2 0 3313 3249 237 317 54 54 chr15 78762174 78762379 -22618142 - L2 LINE L2 -1133 2181 1977 2489 139 61 20 chr15 78762621 78763030 -22617491 + MSTB LTR MaLR 1 426 0 328 170 0 0 chr15 78764509 78764562 -22615959 - Tigger7 DNA MER2_type -35 2452 2400 * 747 159 69 0 chr15 78764561 78764706 -22615815 - Tigger7 DNA MER2_type -201 532 378 804 137 68 0 chr15 78764709 78764855 -22615666 - Tigger7 DNA MER2_type -201 532 377 2809 168 65 12 chr15 78764857 78765362 -22615159 - Tigger7 DNA MER2_type -201 532 1 2173 192 64 57 chr15 78765362 78765878 -22614643 - MLT2B3 LTR ERVL -41 508 3 1434 173 50 18 chr15 78766797 78767098 -22613423 - AluJb SINE Alu 0 310 1 266 277 101 48 chr15 78768279 78768467 -22612054 - L1ME3A LINE L1 -8 6162 5965 1546 156 73 0 chr15 78768617 78768892 -22611629 - AluJo SINE Alu -17 295 1 764 59 29 0 chr15 78768914 78769016 -22611505 + L1PB2 LINE L1 6045 6149 -2 896 271 96 31 chr15 78769034 78769705 -22610816 - L1ME3A LINE L1 -356 5806 5094 416 262 200 7 chr15 78771561 78771851 -22608670 - L1ME LINE L1 -567 5603 5258 640 279 76 18 chr15 78771884 78772160 -22608361 - MLT1J LTR MaLR -151 360 69 195 267 198 0 chr15 78772167 78772253 -22608268 + L3 LINE CR1 1154 1256 -321 261 309 12 36 chr15 78772997 78773081 -22607440 - L2 LINE L2 -15 3257 3176 288 287 60 100 chr15 78774218 78774293 -22606228 - MIR SINE MIR -32 230 162 2085 120 0 32 chr15 78774293 78774601 -22605920 + AluSx SINE Alu 1 298 -14 288 287 60 100 chr15 78774601 78774675 -22605846 - MIR SINE MIR -100 162 87 1399 188 3 50 chr15 78774685 78774988 -22605533 + AluJo SINE Alu 1 289 -23 181 321 0 0 chr15 78775361 78775417 -22605104 + L2 LINE L2 3209 3264 -8 327 356 48 16 chr15 78775670 78775858 -22604663 + MIR SINE MIR 69 262 0 583 243 96 6 chr15 78776056 78776233 -22604288 - MARNA DNA Mariner -140 446 254 40 49 0 0 chr15 78776407 78776468 -22604053 + AT_rich Low_complexity Low_complexity 1 61 0 1162 190 18 5 chr15 78776530 78776751 -22603770 + L1MD3 LINE L1 7719 7942 -53 1249 139 5 0 chr15 78776755 78776942 -22603579 - AluSg/x SINE Alu 0 310 123 343 197 0 0 chr15 78776945 78777011 -22603510 + L1MD3 LINE L1 7930 7995 0 1110 116 52 23 chr15 78777061 78777234 -22603287 + L1MC1 LINE L1 6156 6333 0 1584 138 112 4 chr15 78780907 78781176 -22599345 - AluJb SINE Alu -13 299 2 238 213 88 0 chr15 78781449 78781529 -22598992 + L1ME4a LINE L1 3723 3809 -2337 347 271 79 73 chr15 78782009 78782312 -22598209 + L1ME4a LINE L1 3884 4188 -1958 398 240 33 8 chr15 78782319 78782440 -22598081 + L1ME1 LINE L1 6040 6163 -3 * 1061 257 107 23 chr15 78782432 78782958 -22597563 + L1ME4a LINE L1 4161 4730 -1416 33 25 0 0 chr15 78783112 78783152 -22597369 + AT_rich Low_complexity Low_complexity 1 40 0 846 161 123 0 chr15 78783206 78783361 -22597160 + AluSg/x SINE Alu 127 300 -10 626 316 103 17 chr15 78783746 78784163 -22596358 + L1ME4a LINE L1 5409 5861 -260 1218 118 0 12 chr15 78784165 78784334 -22596187 + FRAM SINE Alu 1 166 -10 2053 142 0 7 chr15 78784519 78784822 -22595699 - AluJo SINE Alu -11 301 1 3889 114 31 15 chr15 78785356 78785740 -22594781 - L1MB3 LINE L1 -10 6173 5775 2422 116 39 14 chr15 78785740 78786095 -22594426 - THE1B LTR MaLR 0 364 1 3889 114 31 15 chr15 78786095 78786298 -22594223 - L1MB3 LINE L1 -408 5775 5577 3090 113 12 0 chr15 78786320 78786737 -22593784 - L1PA10 LINE L1 0 6168 5747 1934 106 6 75 chr15 78786747 78787069 -22593452 - AluSg SINE Alu -10 300 1 312 203 43 0 chr15 78787499 78787568 -22592953 + MIR SINE MIR 79 150 -112 25 31 0 0 chr15 78788204 78788236 -22592285 + AT_rich Low_complexity Low_complexity 1 32 0 231 160 67 27 chr15 78788432 78788507 -22592014 + L1MCa LINE L1 1986 2063 -4363 530 211 29 99 chr15 78788521 78788579 -22591942 - L1ME3 LINE L1 -221 5941 5880 2160 104 7 0 chr15 78788579 78788876 -22591645 - AluSg SINE Alu -11 299 1 530 211 29 99 chr15 78788876 78789004 -22591517 - L1ME3 LINE L1 -282 5880 5773 1861 156 3 7 chr15 78789004 78789305 -22591216 - AluJb SINE Alu -12 300 1 530 211 29 99 chr15 78789305 78789359 -22591162 - L1ME3 LINE L1 -389 5773 5717 517 231 22 45 chr15 78789402 78789536 -22590985 - MER5B DNA MER1_type -4 174 44 314 222 122 0 chr15 78789594 78789684 -22590837 - MER5A DNA MER1_type -80 109 9 635 281 112 10 chr15 78789685 78790051 -22590470 - L1ME3 LINE L1 -540 5630 5217 2183 116 3 7 chr15 78790238 78790548 -22589973 + AluSx SINE Alu 1 309 -3 2219 116 0 0 chr15 78790721 78791024 -22589497 - AluSx SINE Alu -9 303 1 602 184 128 28 chr15 78791084 78791225 -22589296 - L2 LINE L2 0 3313 3159 595 268 193 5 chr15 78791347 78791560 -22588961 + MIR SINE MIR 9 261 -1 425 132 88 0 chr15 78792530 78792598 -22587923 + MER5A DNA MER1_type 2 75 -114 1226 162 72 14 chr15 78792600 78792640 -22587881 + AluJb SINE Alu 1 37 -275 4000 141 6 35 chr15 78792640 78793294 -22587227 - MER41B LTR ERV1 0 635 1 1226 162 72 14 chr15 78793294 78793475 -22587046 + AluJb SINE Alu 37 235 -77 1797 142 126 31 chr15 78794220 78794285 -22586236 + MER7A DNA MER2_type 1 58 -2980 2226 103 0 7 chr15 78794285 78794620 -22585901 - AluSx SINE Alu 0 333 1 1797 142 126 31 chr15 78794620 78794871 -22585650 + MER7A DNA MER2_type 58 346 0 2557 181 13 71 chr15 78794874 78795364 -22585157 - MLT2B3 LTR ERVL -40 514 57 2232 103 0 0 chr15 78795364 78795669 -22584852 - AluSg SINE Alu 0 305 1 2557 181 13 71 chr15 78795669 78795723 -22584798 - MLT2B3 LTR ERVL -497 57 1 4820 129 29 1 chr15 78795979 78796699 -22583822 + Tigger2 DNA MER2_type 5 744 -1974 1379 148 62 0 chr15 78796760 78797003 -22583518 + Tigger2 DNA MER2_type 2461 2718 0 230 288 112 27 chr15 78797084 78797263 -22583258 - L2 LINE L2 -20 3252 3006 894 122 14 0 chr15 78797445 78797584 -22582937 + AluJb SINE Alu 1 141 -171 185 148 0 37 chr15 78797602 78797656 -22582865 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 26 50 0 0 chr15 78797761 78797801 -22582720 + AT_rich Low_complexity Low_complexity 1 40 0 798 182 113 19 chr15 78797802 78797961 -22582560 - FAM SINE Alu 0 175 2 285 261 36 9 chr15 78797967 78798078 -22582443 - HAL1 LINE L1 -4 2503 2390 2167 116 0 0 chr15 78798284 78798577 -22581944 + AluSx SINE Alu 1 293 -19 1133 258 124 28 chr15 78798587 78798667 -22581854 - L1MC/D LINE L1 -1990 5818 5747 180 0 0 0 chr15 78798667 78798687 -22581834 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1133 258 124 28 chr15 78798687 78799033 -22581488 - L1MC/D LINE L1 -2061 5747 5351 259 411 0 8 chr15 78799076 78799205 -22581316 - L2 LINE L2 -4 3268 3141 286 259 122 20 chr15 78799266 78799413 -22581108 + L1ME4a LINE L1 5944 6105 -16 196 222 93 0 chr15 78801518 78801572 -22578949 - MIR3 SINE MIR -23 185 127 330 256 12 0 chr15 78801620 78801702 -22578819 - MIR SINE MIR -84 124 42 375 249 155 33 chr15 78801856 78802037 -22578484 - MIR SINE MIR -13 249 47 203 197 30 45 chr15 78802971 78803037 -22577484 + (TCTG)n Simple_repeat Simple_repeat 4 68 0 561 291 35 6 chr15 78804922 78805094 -22575427 + MIR SINE MIR 84 260 -2 406 215 13 0 chr15 78807979 78808058 -22572463 - MER5A DNA MER1_type -78 111 32 371 256 66 90 chr15 78808119 78808330 -22572191 - L3b LINE CR1 -217 1366 1161 349 337 72 18 chr15 78808713 78808879 -22571642 - L2 LINE L2 -21 3251 3077 1314 231 38 3 chr15 78809473 78809763 -22570758 - AluJb SINE Alu -2 300 1 351 0 0 0 chr15 78809794 78809833 -22570688 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr15 78811405 78811426 -22569095 + AT_rich Low_complexity Low_complexity 1 21 0 2224 115 0 0 chr15 78811426 78811738 -22568783 + AluSq SINE Alu 1 312 -1 1079 193 5 10 chr15 78812129 78812336 -22568185 - MER96B DNA MER1_type? -211 206 1 24 0 0 0 chr15 78813067 78813091 -22567430 + AT_rich Low_complexity Low_complexity 1 24 0 258 174 256 47 chr15 78813400 78813486 -22567035 + L2 LINE L2 3210 3313 0 259 340 84 52 chr15 78813706 78813897 -22566624 - MIR SINE MIR -54 208 12 296 342 65 56 chr15 78814085 78814503 -22566018 - L2 LINE L2 -94 3178 2733 515 330 70 22 chr15 78815609 78815839 -22564682 + MIR SINE MIR 4 244 -18 233 265 20 0 chr15 78816070 78816119 -22564402 + L2 LINE L2 3162 3211 -61 211 224 52 0 chr15 78816166 78816224 -22564297 - MIR SINE MIR -7 255 195 387 289 32 19 chr15 78816851 78817007 -22563514 + MER103 DNA DNA 9 166 0 395 250 50 25 chr15 78817563 78817683 -22562838 - L2 LINE L2 0 3313 3191 1560 161 27 13 chr15 78817685 78817984 -22562537 - MER33 DNA MER1_type 0 324 22 590 296 83 61 chr15 78818233 78818776 -22561745 - L2 LINE L2 -337 2977 2423 1446 178 19 4 chr15 78818888 78819152 -22561369 + AluJo SINE Alu 1 268 -44 698 184 0 24 chr15 78819384 78819509 -22561012 - FLAM_A SINE Alu -11 122 1 695 303 59 33 chr15 78820724 78821028 -22559493 + MLT1I LTR MaLR 18 329 -80 255 250 154 0 chr15 78821366 78821470 -22559051 - L1ME4a LINE L1 -43 6078 5959 340 327 111 26 chr15 78821646 78821977 -22558544 - L1ME4a LINE L1 -2345 5463 5265 188 370 0 0 chr15 78822278 78822359 -22558162 + L3 LINE CR1 374 454 -1123 1546 152 32 28 chr15 78822768 78823051 -22557470 + L1MA4A LINE L1 5604 5887 -416 1666 143 48 17 chr15 78823080 78823258 -22557263 - AluJo SINE Alu -10 302 110 369 0 0 0 chr15 78823258 78823299 -22557222 + (TG)n Simple_repeat Simple_repeat 2 42 0 1666 143 48 17 chr15 78823299 78823413 -22557108 - AluJo SINE Alu -202 110 1 180 314 129 40 chr15 78823536 78823660 -22556861 + L2 LINE L2 3138 3272 0 1240 203 106 101 chr15 78824395 78824941 -22555580 - MLT1H LTR MaLR 0 549 1 1776 175 42 3 chr15 78824974 78825305 -22555216 - MER2 DNA MER2_type 0 344 1 492 274 52 8 chr15 78825958 78826138 -22554383 + MIR3 SINE MIR 7 192 -60 676 210 22 0 chr15 78826156 78826294 -22554227 - MLT1A1 LTR MaLR 0 365 225 447 307 10 54 chr15 78826805 78827010 -22553511 - MIR SINE MIR -35 227 32 203 358 75 17 chr15 78827017 78827111 -22553410 + MIR3 SINE MIR 59 163 -45 2649 108 6 0 chr15 78827111 78827473 -22553048 - THE1B LTR MaLR 0 364 1 203 358 75 17 chr15 78827473 78827498 -22553023 + MIR3 SINE MIR 163 185 -23 538 354 28 6 chr15 78827629 78827807 -22552714 + MIR3 SINE MIR 9 190 -18 24 53 0 0 chr15 78828834 78828872 -22551649 + AT_rich Low_complexity Low_complexity 1 38 0 528 300 62 18 chr15 78829907 78830134 -22550387 + MARNA DNA Mariner 170 406 -180 1921 136 27 7 chr15 78830467 78830761 -22549760 - AluJo SINE Alu -12 300 1 186 308 58 0 chr15 78831377 78831429 -22549092 - MIR SINE MIR -68 140 86 670 291 29 14 chr15 78832326 78832604 -22547917 + L1ME4a LINE L1 5581 5862 -259 2150 220 45 50 chr15 78832748 78833371 -22547150 - MLT1E3 LTR MaLR -4 620 1 2026 78 44 0 chr15 78833595 78833891 -22546630 - AluY SINE Alu 0 308 1 440 276 5 5 chr15 78834017 78834228 -22546293 + (TCCA)n Simple_repeat Simple_repeat 1 211 0 343 260 130 82 chr15 78834246 78834477 -22546044 - L2 LINE L2 -2 3311 3070 1722 171 0 7 chr15 78834788 78835093 -22545428 - AluSx SINE Alu -9 303 1 826 173 0 29 chr15 78835236 78835409 -22545112 - FAM SINE Alu -12 173 6 434 306 82 12 chr15 78835614 78835784 -22544737 + MIR SINE MIR 4 185 -77 577 229 25 0 chr15 78836422 78836540 -22543981 + MIR SINE MIR 136 256 -6 2139 102 20 0 chr15 78836587 78836882 -22543639 - AluSx SINE Alu -11 301 1 335 313 70 8 chr15 78836894 78837022 -22543499 - MIR SINE MIR -119 143 8 183 323 202 30 chr15 78837125 78837224 -22543297 + L2 LINE L2 3147 3262 -10 2391 62 7 3 chr15 78837280 78837585 -22542936 - AluY SINE Alu -5 306 1 238 184 13 40 chr15 78837740 78837816 -22542705 + L2 LINE L2 2986 3059 -213 202 284 63 63 chr15 78837879 78837974 -22542547 - L2 LINE L2 -252 3020 2926 686 165 15 8 chr15 78838084 78838217 -22542304 - FLAM_C SINE Alu -4 139 6 440 303 7 41 chr15 78838373 78838563 -22541958 + MIR3 SINE MIR 11 192 -63 507 340 27 5 chr15 78838567 78838752 -22541769 + MIR SINE MIR 64 252 -10 518 157 10 0 chr15 78838754 78838856 -22541665 + CT-rich Low_complexity Low_complexity 2 104 0 1654 155 0 40 chr15 78840543 78840879 -22539642 + AluJb SINE Alu 1 324 0 293 302 9 26 chr15 78841186 78841302 -22539219 + MIR SINE MIR 98 211 -51 1152 254 34 31 chr15 78841302 78841657 -22538864 - MLT1I LTR MaLR 0 409 54 21 36 0 0 chr15 78841760 78841788 -22538733 + AT_rich Low_complexity Low_complexity 1 28 0 1869 122 10 35 chr15 78843492 78843803 -22536718 + AluSx SINE Alu 1 303 -9 2127 113 0 3 chr15 78845928 78846228 -22534293 + AluSx SINE Alu 1 299 -13 333 0 0 0 chr15 78847797 78847834 -22532687 + (TG)n Simple_repeat Simple_repeat 1 37 0 475 259 21 60 chr15 78848586 78848737 -22531784 + MIR SINE MIR 11 154 -61 278 374 79 16 chr15 78848927 78849181 -22531340 - L2 LINE L2 -2856 458 189 351 0 0 0 chr15 78850154 78850193 -22530328 + (TG)n Simple_repeat Simple_repeat 2 40 0 294 244 278 17 chr15 78850463 78850578 -22529943 + Charlie8 DNA MER1_type 10 154 -2263 843 244 241 38 chr15 78850609 78850974 -22529547 - MLT1G1 LTR MaLR -57 538 100 462 281 106 20 chr15 78852116 78852315 -22528206 - MIR SINE MIR -10 252 37 369 279 45 18 chr15 78852891 78853027 -22527494 + MIR SINE MIR 7 156 -58 * 519 359 24 20 chr15 78853022 78853273 -22527248 + MIR SINE MIR 11 262 0 237 365 56 0 chr15 78853805 78853912 -22526609 - L2 LINE L2 -609 2705 2593 255 300 25 0 chr15 78854575 78854655 -22525866 + L2 LINE L2 3191 3272 0 232 304 104 52 chr15 78855302 78855417 -22525104 + MIR SINE MIR 1 122 -86 201 74 0 0 chr15 78855435 78855462 -22525059 + (CAA)n Simple_repeat Simple_repeat 2 28 0 206 167 28 0 chr15 78856269 78856305 -22524216 - MIR SINE MIR -112 150 114 444 274 90 49 chr15 78857562 78857613 -22522908 - MIR SINE MIR -11 251 204 207 100 0 0 chr15 78857613 78857643 -22522878 + (TG)n Simple_repeat Simple_repeat 2 31 0 444 274 90 49 chr15 78857643 78857814 -22522707 - MIR SINE MIR -58 204 20 336 249 180 30 chr15 78859285 78859436 -22521085 - MIR SINE MIR -65 143 20 1030 118 0 7 chr15 78859760 78859896 -22520625 + AluSx SINE Alu 47 181 -131 423 325 73 10 chr15 78860538 78860744 -22519777 - MIR SINE MIR -7 255 37 774 171 68 51 chr15 78860846 78861022 -22519499 - MER5A DNA MER1_type -5 184 6 555 254 0 8 chr15 78861086 78861216 -22519305 + MER3 DNA MER1_type 1 129 -80 2415 88 0 3 chr15 78861216 78861524 -22518997 - AluSc SINE Alu -2 307 1 886 60 40 87 chr15 78861631 78861781 -22518740 - MER30B DNA MER1_type -44 146 4 2183 98 3 7 chr15 78862324 78862652 -22517869 + AluSx SINE Alu 1 327 0 1249 115 0 0 chr15 78862652 78862817 -22517704 + AluSq SINE Alu 133 297 -16 256 203 0 81 chr15 78863059 78863133 -22517388 + MIR3 SINE MIR 93 160 -48 426 250 19 0 chr15 78863136 78863240 -22517281 + MER5A DNA MER1_type 4 109 -80 189 211 11 133 chr15 78864326 78864416 -22516105 - MIR SINE MIR -72 190 112 * 417 247 0 0 chr15 78864393 78864470 -22516051 + MIR SINE MIR 21 97 -165 317 218 218 0 chr15 78864467 78864568 -22515953 + MER5A DNA MER1_type 67 189 0 * 193 303 15 15 chr15 78864568 78864622 -22515899 + MIR3 SINE MIR 154 207 -1 827 262 54 5 chr15 78864631 78864852 -22515669 + MIR SINE MIR 6 237 -25 235 284 21 84 chr15 78864873 78864945 -22515576 - MIR SINE MIR -106 156 90 2586 108 10 49 chr15 78864945 78865351 -22515170 - MLT1B LTR MaLR 0 390 1 235 284 21 84 chr15 78865351 78865373 -22515148 - MIR SINE MIR -172 90 68 600 251 58 37 chr15 78865789 78865980 -22514541 - MIR SINE MIR -67 195 1 180 322 208 7 chr15 78866032 78866181 -22514340 - MIR SINE MIR -70 192 14 184 216 68 80 chr15 78867192 78867280 -22513241 + L3 LINE CR1 1405 1491 -86 288 323 114 12 chr15 78867463 78867630 -22512891 - MIR3 SINE MIR -5 203 20 1585 206 50 79 chr15 78868497 78868568 -22511953 - MLT1J LTR MaLR -29 482 411 1893 115 65 0 chr15 78868568 78868862 -22511659 + AluSx SINE Alu 4 314 0 1585 206 50 79 chr15 78868862 78869284 -22511237 - MLT1J LTR MaLR -100 411 1 504 256 56 0 chr15 78869366 78869491 -22511030 - MIR3 SINE MIR -6 202 71 367 229 130 30 chr15 78870075 78870206 -22510315 + MIR3 SINE MIR 16 159 -49 1060 222 42 4 chr15 78870208 78870469 -22510052 - MER102b DNA MER1_type 0 341 71 2015 176 0 3 chr15 78871038 78871351 -22509170 - AluJb SINE Alu 0 312 1 2210 141 33 28 chr15 78872899 78873261 -22507260 - THE1B LTR MaLR 0 364 1 477 321 21 32 chr15 78874441 78874628 -22505893 - MIR3 SINE MIR -9 199 15 1801 132 57 27 chr15 78875269 78875602 -22504919 - MER2 DNA MER2_type 0 344 2 1926 156 7 0 chr15 78876469 78876779 -22503742 - AluSx SINE Alu 0 312 1 911 285 74 59 chr15 78877208 78877963 -22502558 - L2 LINE L2 0 3313 2545 555 282 53 6 chr15 78878292 78878462 -22502059 - MIR SINE MIR -38 224 47 372 43 0 0 chr15 78878793 78878839 -22501682 + (CA)n Simple_repeat Simple_repeat 1 46 0 335 312 82 24 chr15 78879133 78879303 -22501218 - L1M4 LINE L1 -1434 4712 4533 506 86 151 0 chr15 78879428 78879521 -22501000 + L1MB1 LINE L1 6060 6166 -2 23 0 0 0 chr15 78879522 78879545 -22500976 + AT_rich Low_complexity Low_complexity 1 23 0 1371 136 5 0 chr15 78880958 78881171 -22499350 - L1PA10 LINE L1 -5 6163 5950 716 303 42 4 chr15 78881627 78881868 -22498653 + MIR SINE MIR 13 262 0 331 330 101 13 chr15 78882235 78882462 -22498059 - L2 LINE L2 -348 2966 2720 843 235 67 62 chr15 78882592 78882997 -22497524 - MER39 LTR ERV1 0 707 301 342 269 58 0 chr15 78882975 78883079 -22497442 - MER34 LTR ERV1 -428 114 5 * 1405 105 214 51 chr15 78884125 78884382 -22496139 + AluY SINE Alu 1 299 -2 588 200 83 0 chr15 78884974 78885094 -22495427 - MER96 DNA MER1_type? -21 154 25 263 163 163 12 chr15 78885103 78885183 -22495338 + MIR SINE MIR 99 190 -72 28 0 0 0 chr15 78885217 78885245 -22495276 + AT_rich Low_complexity Low_complexity 1 28 0 2048 125 21 0 chr15 78885245 78885533 -22494988 + AluSx SINE Alu 1 294 -18 270 81 0 0 chr15 78885534 78885571 -22494950 + (AAATG)n Simple_repeat Simple_repeat 4 40 0 344 274 65 16 chr15 78886426 78886550 -22493971 - L2 LINE L2 -18 3254 3125 704 220 73 0 chr15 78886621 78886771 -22493750 + MIR SINE MIR 46 206 -56 748 192 0 33 chr15 78886782 78886933 -22493588 + MER5B DNA MER1_type 2 147 -31 374 237 104 20 chr15 78888709 78888890 -22491631 - MLT1H LTR MaLR -235 174 1 358 188 12 24 chr15 78889064 78889149 -22491372 - LTR67 LTR ERVL 0 557 474 225 281 56 62 chr15 78889314 78889474 -22491047 - MLT1K LTR MaLR -394 194 36 1070 233 36 4 chr15 78890507 78890760 -22489761 + MIR SINE MIR 2 262 0 830 146 0 22 chr15 78890915 78891052 -22489469 - AluJo SINE Alu -178 134 1 2511 89 0 0 chr15 78891272 78891576 -22488945 + AluSg SINE Alu 1 304 -6 489 288 9 0 chr15 78891587 78891698 -22488823 - L2 LINE L2 -27 3245 3134 671 78 10 0 chr15 78892926 78893029 -22487492 + (TG)n Simple_repeat Simple_repeat 2 105 0 458 314 0 0 chr15 78893548 78893669 -22486852 - MIR SINE MIR -44 218 98 883 189 29 53 chr15 78893681 78893758 -22486763 - MER3 DNA MER1_type -8 201 124 2485 87 0 0 chr15 78893758 78894057 -22486464 + AluSq SINE Alu 1 299 -14 883 189 29 53 chr15 78894057 78894185 -22486336 - MER3 DNA MER1_type -85 124 1 278 220 154 22 chr15 78894369 78894460 -22486061 + MER102b DNA MER1_type 230 332 -9 2251 121 3 3 chr15 78894771 78895078 -22485443 - AluSx SINE Alu -5 307 1 982 192 14 51 chr15 78895080 78895294 -22485227 - MER20 DNA MER1_type -13 206 1 1688 261 98 19 chr15 78895296 78896039 -22484482 - L1M4 LINE L1 -869 5277 4476 288 91 0 0 chr15 78896190 78896234 -22484287 + (GA)n Simple_repeat Simple_repeat 2 45 0 246 300 100 0 chr15 78896394 78896484 -22484037 - L2 LINE L2 -205 3067 2969 225 196 0 0 chr15 78897182 78897228 -22483293 + T-rich Low_complexity Low_complexity 1 46 0 483 256 52 9 chr15 78899892 78900030 -22480491 - MIR SINE MIR -63 145 4 381 22 0 0 chr15 78900395 78900441 -22480080 + (TG)n Simple_repeat Simple_repeat 2 47 0 489 343 25 5 chr15 78900921 78901119 -22479402 - MIR SINE MIR -8 254 53 851 243 104 0 chr15 78902189 78902411 -22478110 - MER102b DNA MER1_type -95 246 2 415 313 136 5 chr15 78902896 78903110 -22477411 + MIR SINE MIR 2 243 -19 2376 111 0 0 chr15 78903558 78903864 -22476657 + AluSq SINE Alu 1 306 -7 449 309 124 5 chr15 78904215 78904416 -22476105 - MIR SINE MIR -25 237 13 329 292 106 0 chr15 78904418 78904531 -22475990 - L2 LINE L2 0 3313 3189 319 269 46 39 chr15 78904985 78905115 -22475406 - MIR3 SINE MIR -33 175 45 222 190 35 0 chr15 78906124 78906182 -22474339 + (TA)n Simple_repeat Simple_repeat 1 60 0 1745 157 4 0 chr15 78906291 78906546 -22473975 + AluJo SINE Alu 34 289 -23 378 289 32 39 chr15 78907982 78908138 -22472383 + MER5B DNA MER1_type 1 155 -23 1653 196 0 21 chr15 78908171 78908457 -22472064 - AluSx SINE Alu -32 280 1 180 0 0 0 chr15 78910186 78910206 -22470315 + (GA)n Simple_repeat Simple_repeat 2 21 0 2026 160 10 7 chr15 78910785 78911092 -22469429 - AluSx SINE Alu -4 308 1 233 330 93 8 chr15 78911890 78912008 -22468513 - L2 LINE L2 -4 3309 3182 234 305 22 0 chr15 78912671 78912777 -22467744 + MIR SINE MIR 4 113 -95 297 122 14 108 chr15 78912970 78913044 -22467477 + MADE1 DNA Mariner 2 68 -12 189 345 36 0 chr15 78914012 78914096 -22466425 - L2 LINE L2 -1037 2277 2191 245 346 0 31 chr15 78915108 78915235 -22465286 - MIR SINE MIR 0 262 140 1600 157 38 24 chr15 78915436 78915729 -22464792 + AluJo SINE Alu 11 307 -5 434 313 61 0 chr15 78915772 78915935 -22464586 - MIR SINE MIR -59 203 31 2015 129 9 49 chr15 78916015 78916340 -22464181 - AluSx SINE Alu 0 312 1 1288 227 26 40 chr15 78916418 78916797 -22463724 + L1ME2 LINE L1 5781 6154 -10 230 209 327 9 chr15 78917225 78917335 -22463186 - MIR3 SINE MIR -63 145 1 355 170 71 0 chr15 78918149 78918237 -22462284 - MER5A DNA MER1_type -90 99 4 583 296 210 3 chr15 78918242 78918746 -22461775 - L2 LINE L2 -83 3230 2609 2282 95 3 38 chr15 78918949 78919264 -22461257 + AluSp SINE Alu 1 304 -9 1737 240 100 12 chr15 78919298 78919786 -22460735 - MLT1K LTR MaLR -2 586 56 437 228 97 55 chr15 78920143 78920288 -22460233 + MER21B LTR ERV1 656 806 -57 229 308 77 11 chr15 78920421 78920512 -22460009 + MER5A DNA MER1_type 65 161 -28 243 190 0 0 chr15 78920522 78920580 -22459941 + (CA)n Simple_repeat Simple_repeat 1 58 0 284 255 33 148 chr15 78921484 78921727 -22458794 + L2 LINE L2 3099 3313 0 769 240 39 15 chr15 78923299 78923503 -22457018 - MIR SINE MIR -25 237 29 223 290 194 16 chr15 78923612 78923736 -22456785 + L3 LINE CR1 1083 1228 -349 897 174 0 43 chr15 78924678 78924839 -22455682 + FRAM SINE Alu 1 154 -22 2457 180 37 4 chr15 78924848 78925336 -22455185 + MLT1D LTR MaLR 1 504 -1 576 202 162 7 chr15 78926706 78926877 -22453644 - MLT1J LTR MaLR -285 161 3 2355 91 10 0 chr15 78927714 78928021 -22452500 + AluSx SINE Alu 1 310 -2 393 284 123 19 chr15 78928404 78928559 -22451962 - MER20B DNA MER1_type -17 202 32 503 257 62 17 chr15 78928622 78928801 -22451720 - MER117 DNA MER1_type 0 197 11 309 313 0 0 chr15 78930327 78930410 -22450111 + Charlie8 DNA MER1_type 7 89 -2328 965 251 8 87 chr15 78930496 78930866 -22449655 + MER102b DNA MER1_type 1 341 0 585 238 26 44 chr15 78931028 78931217 -22449304 + MIR SINE MIR 13 192 -62 632 301 60 5 chr15 78931415 78931614 -22448907 + MIR SINE MIR 23 232 -30 261 0 0 0 chr15 78931961 78931990 -22448531 + (CA)n Simple_repeat Simple_repeat 1 29 0 290 309 27 0 chr15 78932014 78932124 -22448397 + MIR SINE MIR 64 176 -86 288 278 41 0 chr15 78932388 78932557 -22447964 + (GGCTG)n Simple_repeat Simple_repeat 4 179 0 318 329 122 5 chr15 78933888 78934110 -22446411 + MIR SINE MIR 2 249 -13 447 240 82 41 chr15 78934210 78934356 -22446165 - MER103 DNA DNA -3 163 12 230 267 17 0 chr15 78934871 78934931 -22445590 + MER91 DNA MER1_type 4 64 -76 3659 146 11 66 chr15 78935162 78935893 -22444628 - LTR8 LTR ERV1 0 691 1 394 238 25 41 chr15 78936563 78936685 -22443836 - MER94 DNA DNA -10 124 5 307 100 50 0 chr15 78936997 78937057 -22443464 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 218 214 0 0 chr15 78937123 78937165 -22443356 - L3 LINE CR1 -5 1572 1531 356 336 27 7 chr15 78937746 78937892 -22442629 + MIR3 SINE MIR 36 184 -24 279 252 42 8 chr15 78938207 78938323 -22442198 + MIR SINE MIR 82 205 -57 2118 153 0 0 chr15 78938426 78938733 -22441788 + AluJb SINE Alu 1 307 -5 730 154 33 115 chr15 78938760 78938942 -22441579 + MER20 DNA MER1_type 1 167 -52 354 314 72 41 chr15 78939128 78939322 -22441199 + L3 LINE CR1 1365 1564 -13 232 337 0 20 chr15 78939338 78939439 -22441082 - MIR3 SINE MIR -22 186 88 2269 93 0 10 chr15 78939897 78940188 -22440333 + AluSg SINE Alu 6 293 -17 254 326 12 0 chr15 78940234 78940320 -22440201 + L2 LINE L2 3186 3272 0 452 278 99 38 chr15 78941753 78941965 -22438556 - MIR SINE MIR -24 238 14 211 194 0 0 chr15 78942006 78942042 -22438479 + MIR SINE MIR 114 149 -59 257 257 27 14 chr15 78943038 78943112 -22437409 - L2 LINE L2 -1 3271 3197 479 309 57 6 chr15 78944095 78944270 -22436251 - MIR SINE MIR -43 219 36 285 202 0 6 chr15 78944688 78944760 -22435761 + MIR SINE MIR 67 136 -72 429 258 0 0 chr15 78944776 78944869 -22435652 - L3 LINE CR1 -503 1074 982 341 263 0 0 chr15 78945139 78945219 -22435302 - L2 LINE L2 0 3272 3193 185 253 147 0 chr15 78945578 78945653 -22434868 - MIR SINE MIR -62 146 61 347 254 186 21 chr15 78946435 78946628 -22433893 - MIR SINE MIR -10 252 28 194 128 26 0 chr15 78946918 78946957 -22433564 + GA-rich Low_complexity Low_complexity 2 41 0 24 32 0 0 chr15 78947102 78947133 -22433388 + AT_rich Low_complexity Low_complexity 1 31 0 2379 101 0 0 chr15 78947197 78947493 -22433028 - AluSg SINE Alu -14 296 1 323 309 144 0 chr15 78947539 78947720 -22432801 + L3 LINE CR1 1214 1420 -157 629 329 147 39 chr15 78949734 78950224 -22430297 + L3 LINE CR1 932 1474 -103 234 91 0 0 chr15 78951938 78951971 -22428550 + (TCCA)n Simple_repeat Simple_repeat 2 34 0 197 33 33 0 chr15 78952013 78952043 -22428478 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 200 176 0 0 chr15 78953192 78953226 -22427295 + (TG)n Simple_repeat Simple_repeat 2 35 0 319 253 0 27 chr15 78953860 78953935 -22426586 - L2 LINE L2 0 3313 3241 189 147 0 0 chr15 78953937 78953971 -22426550 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 513 227 53 23 chr15 78954022 78954154 -22426367 + MIR SINE MIR 8 143 -119 919 143 113 4 chr15 78954214 78954445 -22426076 - Charlie5 DNA MER1_type -27 2585 2330 288 114 0 0 chr15 78954452 78954496 -22426025 - Charlie5 DNA MER1_type -2421 191 148 26 0 0 0 chr15 78954498 78954524 -22425997 + AT_rich Low_complexity Low_complexity 1 26 0 368 222 46 0 chr15 78954524 78954632 -22425889 - L1MA4 LINE L1 0 6300 6188 365 203 0 0 chr15 78954770 78954844 -22425677 - Charlie5 DNA MER1_type -2510 102 29 216 279 49 0 chr15 78955031 78955092 -22425429 - MIR SINE MIR -59 203 140 346 328 112 27 chr15 78955318 78955720 -22424801 - L2 LINE L2 -1905 1409 974 2481 63 3 25 chr15 78956196 78956511 -22424010 - AluSp SINE Alu -5 308 1 358 335 90 5 chr15 78957501 78957702 -22422819 + MIR SINE MIR 27 250 -12 195 250 71 0 chr15 78957713 78957769 -22422752 - MIR SINE MIR -101 161 102 182 319 229 6 chr15 78957811 78957977 -22422544 - MIR SINE MIR -46 216 14 265 286 74 40 chr15 78958748 78958805 -22421716 - MIR SINE MIR -62 200 146 2142 83 19 0 chr15 78958805 78959070 -22421451 + AluSg SINE Alu 1 270 -40 265 286 74 40 chr15 78959070 78959187 -22421334 - MIR SINE MIR -116 146 20 40 0 0 0 chr15 78961809 78961849 -22418672 + AT_rich Low_complexity Low_complexity 1 40 0 718 261 20 15 chr15 78961916 78962111 -22418410 + MIR SINE MIR 48 243 -19 753 220 92 72 chr15 78962902 78963261 -22417260 - MLT1C LTR MaLR -96 371 6 306 252 84 9 chr15 78963842 78963949 -22416572 + L2 LINE L2 2164 2278 -1036 1441 155 0 0 chr15 78964092 78964311 -22416210 + AluJb SINE Alu 93 311 -1 1657 178 59 7 chr15 78964906 78965073 -22415448 - AluJo SINE Alu -10 302 112 192 40 0 0 chr15 78965073 78965098 -22415423 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1657 178 59 7 chr15 78965098 78965217 -22415304 - AluJo SINE Alu -200 112 1 216 0 0 0 chr15 78965692 78965716 -22414805 + (CA)n Simple_repeat Simple_repeat 2 25 0 1248 217 107 45 chr15 78965716 78966135 -22414386 - MLT2B1 LTR ERVL -75 445 1 21 36 0 0 chr15 78966409 78966437 -22414084 + AT_rich Low_complexity Low_complexity 1 28 0 1994 142 0 7 chr15 78966437 78966725 -22413796 - AluSx SINE Alu -26 286 1 335 239 14 0 chr15 78967979 78968050 -22412471 + MER63 DNA MER1_type 676 747 -315 310 254 0 0 chr15 78968054 78968125 -22412396 + MER63 DNA MER1_type 977 1047 -13 2003 138 3 28 chr15 78968176 78968494 -22412027 + AluJb SINE Alu 3 312 0 1218 264 128 20 chr15 78968869 78969328 -22411193 + LTR33 LTR ERVL 11 519 -2 566 281 82 41 chr15 78969371 78969833 -22410688 + L1ME LINE L1 5293 5773 -348 24724 69 10 0 chr15 78969838 78974057 -22406464 + L1PA6 LINE L1 1892 6153 -1 349 299 66 12 chr15 78974360 78974527 -22405994 + L1ME4a LINE L1 5687 5862 -259 230 209 0 60 chr15 78974723 78974790 -22405731 + L2 LINE L2 2997 3059 -213 2417 96 6 3 chr15 78975103 78975415 -22405106 + AluSp SINE Alu 1 313 0 562 272 92 28 chr15 78976592 78976623 -22403898 - MIR SINE MIR -1 261 233 730 149 45 52 chr15 78976623 78976757 -22403764 + FLAM_C SINE Alu 1 133 0 562 272 92 28 chr15 78976757 78976942 -22403579 - MIR SINE MIR -29 233 31 1905 158 3 7 chr15 78976999 78977291 -22403230 + AluJo SINE Alu 1 291 -21 259 287 58 0 chr15 78977429 78977516 -22403005 + L2 LINE L2 3197 3288 -25 680 212 95 28 chr15 78977654 78977665 -22402856 + MIR SINE MIR 47 56 -206 2284 113 0 0 chr15 78977665 78977966 -22402555 + AluSx SINE Alu 1 301 -11 680 212 95 28 chr15 78977966 78978133 -22402388 + MIR SINE MIR 56 237 -25 262 375 67 27 chr15 78978706 78979079 -22401442 + L2 LINE L2 2370 2757 -557 2288 106 0 7 chr15 78979150 78979451 -22401070 + AluSg SINE Alu 1 299 -11 233 250 0 94 chr15 78979634 78979698 -22400823 + L2 LINE L2 3251 3308 -5 371 259 209 22 chr15 78981455 78981594 -22398927 - MER5A DNA MER1_type -6 183 19 256 298 107 0 chr15 78982657 78982741 -22397780 - MIR SINE MIR -78 130 38 305 281 90 30 chr15 78982863 78983030 -22397491 - MIR SINE MIR 0 262 86 202 396 50 6 chr15 78983406 78983565 -22396956 + MIR3 SINE MIR 22 187 -21 * 297 300 70 0 chr15 78983506 78983606 -22396915 - MIR3 SINE MIR -6 202 96 257 196 18 18 chr15 78984670 78984726 -22395795 + MIR3 SINE MIR 146 201 -7 340 235 147 10 chr15 78985325 78985427 -22395094 - MIR3 SINE MIR -14 194 79 235 299 40 46 chr15 78987491 78987665 -22392856 + MER3 DNA MER1_type 32 204 -5 * 1037 179 0 11 chr15 78987513 78987703 -22392818 - MER3 DNA MER1_type -7 202 15 228 172 0 0 chr15 78987769 78987827 -22392694 + (TG)n Simple_repeat Simple_repeat 2 59 0 267 176 20 0 chr15 78987993 78988044 -22392477 - L2 LINE L2 -3 3269 3218 244 287 118 15 chr15 78988718 78988854 -22391667 - L2 LINE L2 -200 3072 2923 1426 116 56 5 chr15 78989889 78990104 -22390417 - MER30 DNA MER1_type 0 230 5 216 141 31 0 chr15 78990118 78990161 -22390360 + MER5A DNA MER1_type 4 48 -141 2414 100 0 3 chr15 78990623 78990933 -22389588 + AluSg SINE Alu 1 309 -1 21 0 0 0 chr15 78991133 78991154 -22389367 + AT_rich Low_complexity Low_complexity 1 21 0 1364 150 21 21 chr15 78991159 78991236 -22389285 + AluJb SINE Alu 48 124 -188 207 0 0 0 chr15 78991236 78991259 -22389262 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1364 150 21 21 chr15 78991259 78991415 -22389106 + AluJb SINE Alu 123 281 -31 928 143 0 0 chr15 78991580 78991713 -22388808 + AluJb SINE Alu 161 293 -19 767 140 85 61 chr15 78991735 78991997 -22388524 - MER31B LTR ERV1 -80 386 1 1441 204 45 60 chr15 78992212 78992659 -22387862 + MER31B LTR ERV1 1 440 -26 1978 74 74 0 chr15 78992823 78992869 -22387652 - L1PA13 LINE L1 -48 6115 6070 624 235 29 60 chr15 78992869 78993150 -22387371 - L1MA4 LINE L1 -259 6041 5770 490 294 175 19 chr15 78993221 78993541 -22386980 - MLT1L LTR MaLR -51 564 195 2252 123 3 0 chr15 78993817 78994126 -22386395 - AluSx SINE Alu -2 310 1 919 96 8 0 chr15 78994421 78994546 -22385975 - AluSp/q SINE Alu -16 297 172 1794 115 11 63 chr15 78994646 78994933 -22385588 + AluSg SINE Alu 22 293 -17 412 299 138 22 chr15 78996443 78996674 -22383847 - MIR SINE MIR -3 259 2 182 326 79 22 chr15 78997010 78997099 -22383422 + L2 LINE L2 2730 2823 -491 265 257 0 43 chr15 78997379 78997449 -22383072 + L2 LINE L2 3244 3310 -3 616 231 34 0 chr15 78999163 78999280 -22381241 + FLAM_C SINE Alu 1 121 -12 189 0 0 0 chr15 78999292 78999313 -22381208 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1587 159 115 41 chr15 78999343 78999430 -22381091 + L1MB3 LINE L1 5790 5869 -314 2444 75 3 10 chr15 78999430 78999737 -22380784 + AluY SINE Alu 1 305 -6 1587 159 115 41 chr15 78999737 79000014 -22380507 + L1MB3 LINE L1 5869 6181 -2 23 42 0 21 chr15 79000353 79000369 -22380152 + AT_rich Low_complexity Low_complexity 1 16 -31 1568 159 109 41 chr15 79000369 79000708 -22379813 - MLT1A1 LTR MaLR -3 362 1 23 42 0 21 chr15 79000708 79000739 -22379782 + AT_rich Low_complexity Low_complexity 16 47 0 816 283 65 28 chr15 79000845 79001135 -22379386 - MLT1I LTR MaLR -24 385 85 2400 57 0 0 chr15 79001681 79001991 -22378530 - AluY SINE Alu 0 310 1 274 240 10 58 chr15 79002234 79002338 -22378183 - MER94 DNA DNA -35 99 1 303 263 80 8 chr15 79002534 79002664 -22377857 + MIR SINE MIR 11 153 -67 274 320 66 8 chr15 79002833 79002955 -22377566 - MIR SINE MIR -115 147 19 22 56 0 0 chr15 79003615 79003651 -22376870 + GC_rich Low_complexity Low_complexity 1 36 0 31 68 0 0 chr15 79004000 79004059 -22376462 + GC_rich Low_complexity Low_complexity 1 59 0 23 54 0 0 chr15 79004726 79004763 -22375758 + GC_rich Low_complexity Low_complexity 1 37 0 189 211 0 0 chr15 79004840 79004892 -22375629 + (CGG)n Simple_repeat Simple_repeat 3 54 0 2048 45 48 45 chr15 79009283 79009573 -22370948 - AluY SINE Alu -16 295 5 198 0 0 0 chr15 79009577 79009599 -22370922 + (T)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr15 79009934 79009956 -22370565 + AT_rich Low_complexity Low_complexity 1 22 0 266 224 47 59 chr15 79010281 79010366 -22370155 - L2 LINE L2 -2 3311 3228 542 204 44 9 chr15 79010451 79010564 -22369957 + MER5A DNA MER1_type 73 189 0 430 203 184 44 chr15 79011142 79011300 -22369221 + MER5A DNA MER1_type 7 186 -3 1502 188 0 11 chr15 79011586 79011868 -22368653 + AluJb SINE Alu 2 280 -32 1718 108 97 28 chr15 79013209 79013528 -22366993 - AluSx SINE Alu 0 343 5 1519 185 3 41 chr15 79016201 79016515 -22364006 - AluJo SINE Alu -10 302 1 929 170 32 27 chr15 79016754 79016942 -22363579 - MER5A DNA MER1_type 0 189 1 666 199 179 0 chr15 79016950 79017101 -22363420 - MER5B DNA MER1_type 0 178 1 366 264 109 29 chr15 79017105 79017369 -22363152 - MLT1J1 LTR MaLR -51 395 73 2697 140 11 18 chr15 79017455 79017890 -22362631 - MSTB1 LTR MaLR 0 432 1 422 278 92 52 chr15 79017948 79018105 -22362416 - L1ME4a LINE L1 -3 6118 5969 2294 100 3 0 chr15 79018105 79018415 -22362106 - AluY SINE Alu 0 311 1 422 278 92 52 chr15 79018415 79018470 -22362051 - L1ME4a LINE L1 -152 5969 5918 2237 102 0 0 chr15 79018470 79018764 -22361757 - AluSq SINE Alu -19 294 1 422 278 92 52 chr15 79018764 79019007 -22361514 - L1ME4a LINE L1 -203 5918 5644 476 269 46 0 chr15 79019287 79019417 -22361104 + MIR3 SINE MIR 33 168 -40 265 188 21 42 chr15 79019949 79020045 -22360476 + T-rich Low_complexity Low_complexity 3 96 0 983 305 77 13 chr15 79021690 79022201 -22358320 - L1ME3A LINE L1 -2 6160 5577 1940 143 7 0 chr15 79022212 79022512 -22358009 - AluSx SINE Alu -10 302 1 374 275 33 0 chr15 79023413 79023504 -22357017 + MER5A DNA MER1_type 9 102 -87 1780 191 74 16 chr15 79023507 79023874 -22356647 + MSTD LTR MaLR 1 388 -8 184 350 0 0 chr15 79023891 79023951 -22356570 + MER5A DNA MER1_type 128 187 -2 * 528 267 49 1 chr15 79023946 79024096 -22356425 + MIR3 SINE MIR 3 156 -52 237 302 57 113 chr15 79024620 79024868 -22355653 - MLT1K LTR MaLR -15 573 340 248 254 0 0 chr15 79026320 79026387 -22354134 + MIR SINE MIR 152 218 -44 229 301 128 23 chr15 79026568 79026701 -22353820 + L2 LINE L2 3121 3267 -5 433 339 40 23 chr15 79027541 79027715 -22352806 - MIR3 SINE MIR -17 191 15 1875 120 14 0 chr15 79028180 79028456 -22352065 + AluSx SINE Alu 1 280 -32 441 0 0 0 chr15 79028456 79028505 -22352016 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 282 103 0 0 chr15 79028724 79028763 -22351758 + MADE1 DNA Mariner 1 39 -41 1205 164 38 82 chr15 79028803 79029120 -22351401 - AluJo SINE Alu -1 311 9 253 194 112 31 chr15 79029155 79029253 -22351268 - LTR33 LTR ERVL -2 519 414 671 247 73 45 chr15 79029355 79029602 -22350919 - LTR33 LTR ERVL -255 266 13 337 160 75 113 chr15 79030170 79030276 -22350245 - L1ME4a LINE L1 -5 6116 6015 1992 98 0 0 chr15 79030307 79030571 -22349950 + AluSg SINE Alu 2 265 -45 485 341 72 31 chr15 79030704 79031118 -22349403 - L2 LINE L2 -673 2641 2211 724 250 36 32 chr15 79031150 79031370 -22349151 - MIR SINE MIR -10 252 32 219 291 81 0 chr15 79031747 79031833 -22348688 - L3 LINE CR1 -733 844 752 264 379 72 0 chr15 79031936 79032089 -22348432 + MIR SINE MIR 34 197 -65 2670 142 40 21 chr15 79032596 79033075 -22347446 - LTR45B LTR ERV1 0 489 2 2409 119 13 24 chr15 79033120 79033497 -22347024 + THE1C LTR MaLR 3 375 0 2614 169 6 66 chr15 79033799 79034174 -22346347 - MER70A LTR ERVL 0 472 133 1625 186 0 22 chr15 79034174 79034491 -22346030 + AluJo SINE Alu 1 310 -2 2614 169 6 66 chr15 79034491 79034617 -22345904 - MER70A LTR ERVL -339 133 1 480 18 0 0 chr15 79034630 79034687 -22345834 + (TG)n Simple_repeat Simple_repeat 2 58 0 342 263 42 0 chr15 79035945 79036040 -22344481 - MIR3 SINE MIR -5 203 105 1796 169 23 75 chr15 79036691 79037076 -22343445 + MLT1A1 LTR MaLR 1 365 0 506 259 103 76 chr15 79037880 79038095 -22342426 - L2 LINE L2 -342 2972 2764 405 39 0 0 chr15 79038095 79038146 -22342375 + (TG)n Simple_repeat Simple_repeat 1 51 0 506 259 103 76 chr15 79038146 79038336 -22342185 - L2 LINE L2 -550 2764 2556 388 284 93 71 chr15 79038336 79038843 -22341678 - L1MC/D LINE L1 -2036 5772 5255 486 270 158 7 chr15 79039064 79039216 -22341305 - MER5A DNA MER1_type -6 183 9 425 268 98 61 chr15 79039652 79040041 -22340480 + MLT1I LTR MaLR 20 409 0 263 257 43 14 chr15 79040464 79040534 -22339987 + L2 LINE L2 3201 3272 0 367 353 59 27 chr15 79040581 79040802 -22339719 + L3 LINE CR1 36 263 -1314 192 286 126 42 chr15 79040913 79041032 -22339489 - MIR SINE MIR -14 248 120 2457 158 48 2 chr15 79041383 79041783 -22338738 + MSTB LTR MaLR 4 421 -5 1492 176 50 13 chr15 79042604 79042905 -22337616 + AluJo SINE Alu 1 312 0 239 234 0 0 chr15 79043451 79043498 -22337023 + GA-rich Low_complexity Low_complexity 2 48 0 303 242 22 44 chr15 79044800 79044891 -22335630 - HAL1b LINE L1 -628 720 632 546 160 38 38 chr15 79045025 79045156 -22335365 - L1MD2 LINE L1 -3 6356 6226 219 69 0 0 chr15 79045156 79045185 -22335336 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 683 144 10 0 chr15 79045190 79045294 -22335227 - FLAM_C SINE Alu -25 118 14 339 192 0 14 chr15 79045303 79045369 -22335152 - L1MC4a LINE L1 -104 7704 7638 1841 126 18 3 chr15 79045369 79045654 -22334867 - AluSx SINE Alu -3 309 21 301 138 0 77 chr15 79045735 79045800 -22334721 - L1MD2 LINE L1 -184 6175 6116 629 153 47 88 chr15 79046223 79046393 -22334128 - MER96B DNA MER1_type? -235 182 20 336 318 123 59 chr15 79047087 79047559 -22332962 + L1MDa LINE L1 1281 1782 -4758 315 274 118 20 chr15 79047528 79047614 -22332907 + HAL1b LINE L1 767 843 -899 * 1334 147 61 70 chr15 79047614 79047926 -22332595 + AluJo SINE Alu 1 309 -3 315 274 118 20 chr15 79047926 79047992 -22332529 + HAL1b LINE L1 843 934 -808 744 161 31 0 chr15 79048362 79048492 -22332029 + AluJb SINE Alu 164 297 -15 2032 110 27 0 chr15 79048511 79048803 -22331718 - AluSx SINE Alu -12 300 1 380 216 103 67 chr15 79048803 79049058 -22331463 - MLT1G1 LTR MaLR -56 539 235 515 297 73 14 chr15 79049126 79049345 -22331176 + L1ME2 LINE L1 5531 5760 -361 292 306 155 44 chr15 79049563 79049949 -22330572 + L2 LINE L2 2835 3263 -9 270 299 37 9 chr15 79050423 79050530 -22329991 - MLT1K LTR MaLR -466 122 13 622 227 0 0 chr15 79053168 79053278 -22327243 + FLAM_C SINE Alu 3 112 -31 2359 76 3 0 chr15 79053517 79053806 -22326715 + AluSq SINE Alu 1 290 -23 21 0 0 0 chr15 79053820 79053841 -22326680 + AT_rich Low_complexity Low_complexity 1 21 0 1303 213 59 34 chr15 79054417 79054741 -22325780 + L1ME2 LINE L1 5772 6103 -61 908 206 18 0 chr15 79054743 79054913 -22325608 + AluJo SINE Alu 1 173 -139 1878 164 0 3 chr15 79054920 79055213 -22325308 + AluJo SINE Alu 18 309 -3 1571 232 208 4 chr15 79055278 79055817 -22324704 + L1MC4a LINE L1 6351 6999 -809 2463 80 0 0 chr15 79055838 79056137 -22324384 - AluSc SINE Alu -5 304 6 419 244 24 57 chr15 79056210 79056235 -22324286 + L1MC1 LINE L1 5807 5831 -502 758 194 8 15 chr15 79056235 79056369 -22324152 + FLAM_C SINE Alu 1 133 0 419 244 24 57 chr15 79056369 79056552 -22323969 + L1MC1 LINE L1 5831 6008 -325 * 1598 150 85 29 chr15 79056374 79056715 -22323806 + L1MB8 LINE L1 5814 6173 -5 472 286 40 0 chr15 79056882 79057008 -22323513 + MIR3 SINE MIR 45 175 -33 424 247 168 31 chr15 79057109 79057312 -22323209 + MIR SINE MIR 9 225 -37 273 308 33 8 chr15 79057331 79057451 -22323070 + L2 LINE L2 1830 1952 -1362 1751 178 3 32 chr15 79057583 79057898 -22322623 - AluJb SINE Alu -6 306 1 2774 120 28 0 chr15 79058067 79058493 -22322028 + L1MA5 LINE L1 5851 6288 -12 357 272 204 19 chr15 79058802 79058964 -22321557 - MIR SINE MIR 0 262 71 232 267 93 12 chr15 79059306 79059392 -22321129 - MIR SINE MIR -51 211 119 2288 108 0 0 chr15 79059435 79059732 -22320789 - AluSx SINE Alu -15 297 1 526 224 43 0 chr15 79059837 79059953 -22320568 + MIR SINE MIR 77 197 -65 521 272 32 0 chr15 79060340 79060465 -22320056 - MIR3 SINE MIR -1 207 79 186 43 0 0 chr15 79061371 79061394 -22319127 + (CAG)n Simple_repeat Simple_repeat 2 24 0 724 179 15 22 chr15 79062311 79062445 -22318076 + FLAM_C SINE Alu 1 133 0 273 206 130 46 chr15 79062448 79062579 -22317942 - L1MC/D LINE L1 -1983 5825 5684 853 241 96 100 chr15 79062592 79063081 -22317440 - MLT1J LTR MaLR -9 502 16 240 336 39 47 chr15 79063844 79063972 -22316549 - MIR SINE MIR -116 146 20 2357 95 0 0 chr15 79064850 79065145 -22315376 + AluSx SINE Alu 1 295 -17 322 245 57 74 chr15 79065148 79065524 -22314997 + L1P5 LINE L1 5280 5661 -460 325 280 10 20 chr15 79065533 79065633 -22314888 - MIR SINE MIR 0 262 164 247 267 185 14 chr15 79065789 79065935 -22314586 + L1ME4a LINE L1 5903 6073 -48 1213 154 101 32 chr15 79065969 79066122 -22314399 - AluJb SINE Alu -9 303 125 2048 82 0 26 chr15 79066122 79066392 -22314129 - AluSg SINE Alu -14 296 34 1213 154 101 32 chr15 79066392 79066485 -22314036 - AluJb SINE Alu -187 125 40 7568 190 34 12 chr15 79066770 79066816 -22313705 - L1 LINE L1 -1399 4747 4703 1643 38 0 0 chr15 79066816 79067002 -22313519 - L1PA3 LINE L1 0 6155 5970 7568 190 34 12 chr15 79067002 79068435 -22312086 - L1 LINE L1 -1443 4703 3227 2366 94 0 3 chr15 79068435 79068732 -22311789 - AluSg SINE Alu -14 296 1 7568 190 34 12 chr15 79068732 79068884 -22311637 - L1 LINE L1 -2919 3227 3080 3676 185 10 91 chr15 79068885 79070411 -22310110 + L1PB2 LINE L1 4739 6151 0 267 341 58 8 chr15 79070436 79070694 -22309827 - L1 LINE L1 -1141 5005 4735 21 57 0 0 chr15 79071114 79071149 -22309372 + AT_rich Low_complexity Low_complexity 1 35 0 4846 167 36 35 chr15 79071186 79072032 -22308489 - L1MB7 LINE L1 0 6184 5340 2015 142 0 37 chr15 79072032 79072356 -22308165 - AluJb SINE Alu 0 312 1 4846 167 36 35 chr15 79072356 79072680 -22307841 - L1MB7 LINE L1 -844 5340 5018 2118 122 14 0 chr15 79072680 79072997 -22307524 - AluSq SINE Alu 0 313 1 4846 167 36 35 chr15 79072997 79073661 -22306860 - L1MB7 LINE L1 -1166 5018 4350 689 306 63 42 chr15 79073913 79074246 -22306275 + MLT1K LTR MaLR 69 408 -180 1801 133 35 7 chr15 79074305 79074591 -22305930 - AluSx SINE Alu -18 294 1 297 270 0 0 chr15 79074873 79074947 -22305574 + MER69 DNA AcHobo 460 533 -693 1422 227 67 28 chr15 79075075 79075537 -22304984 + MER69 DNA AcHobo 2021 2500 -26 270 0 0 0 chr15 79075653 79075683 -22304838 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 421 274 68 27 chr15 79075704 79075850 -22304671 + L1ME2 LINE L1 5512 5663 -458 1963 151 7 7 chr15 79076135 79076440 -22304081 - AluSx SINE Alu -3 309 5 264 149 0 0 chr15 79076605 79076652 -22303869 + (CA)n Simple_repeat Simple_repeat 2 48 0 200 269 0 0 chr15 79076672 79076724 -22303797 + (CA)n Simple_repeat Simple_repeat 1 52 0 366 285 115 0 chr15 79077136 79077266 -22303255 + MIR3 SINE MIR 61 205 -3 273 268 10 52 chr15 79078923 79079020 -22301501 + L3b LINE CR1 1286 1378 -205 988 184 73 34 chr15 79079346 79079580 -22300941 + L1ME2 LINE L1 5911 6153 -11 7981 30 1 18 chr15 79079632 79080695 -22299826 + L1PA3 LINE L1 5107 6154 -1 248 270 178 33 chr15 79080776 79080928 -22299593 + MIR3 SINE MIR 18 191 -17 203 279 44 29 chr15 79081507 79081575 -22298946 - L3b LINE CR1 -111 1472 1404 344 310 126 11 chr15 79081596 79081770 -22298751 + MIR SINE MIR 23 216 -46 358 304 68 43 chr15 79082028 79082189 -22298332 + MIR SINE MIR 88 252 -10 2190 86 0 0 chr15 79082228 79082496 -22298025 + AluSx SINE Alu 17 284 -28 1704 237 27 44 chr15 79082678 79083154 -22297367 + LTR16C LTR ERVL 22 489 -2 297 0 0 0 chr15 79083844 79083877 -22296644 + (CA)n Simple_repeat Simple_repeat 1 33 0 1902 143 14 0 chr15 79083885 79084172 -22296349 - AluJo SINE Alu -21 291 1 214 200 0 0 chr15 79084242 79084282 -22296239 + (TAA)n Simple_repeat Simple_repeat 1 40 0 1816 121 25 32 chr15 79085051 79085331 -22295190 + AluSx SINE Alu 1 278 -34 195 42 0 0 chr15 79085332 79085356 -22295165 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 187 292 26 53 chr15 79085395 79085508 -22295013 + MIR3 SINE MIR 83 192 -16 1536 164 119 7 chr15 79085901 79086170 -22294351 - AluJo SINE Alu -3 299 1 238 305 50 136 chr15 79086779 79087117 -22293404 - L2 LINE L2 -32 3240 2932 862 86 9 0 chr15 79087274 79087390 -22293131 + FLAM_A SINE Alu 20 136 -6 235 299 43 43 chr15 79087418 79087535 -22292986 - MIR SINE MIR -85 177 61 201 74 0 0 chr15 79087646 79087673 -22292848 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 249 231 39 0 chr15 79088482 79088534 -22291987 - MIR3 SINE MIR -52 156 103 326 250 157 36 chr15 79088693 79088833 -22291688 + MIR SINE MIR 96 252 -10 356 240 184 73 chr15 79088964 79089372 -22291149 - HAL1b LINE L1 -562 786 334 937 143 0 0 chr15 79089467 79089600 -22290921 - FLAM_C SINE Alu 0 133 1 200 33 0 33 chr15 79090001 79090013 -22290508 + (TGG)n Simple_repeat Simple_repeat 2 13 -17 2235 109 20 0 chr15 79090013 79090315 -22290206 + AluSx SINE Alu 1 308 -4 200 33 0 33 chr15 79090315 79090332 -22290189 + (TGG)n Simple_repeat Simple_repeat 13 30 0 1672 162 20 27 chr15 79091148 79091444 -22289077 + AluJo SINE Alu 1 294 -18 249 33 0 0 chr15 79091830 79091860 -22288661 + (ATG)n Simple_repeat Simple_repeat 1 30 0 316 132 44 59 chr15 79091862 79091930 -22288591 - MIR SINE MIR -9 253 187 1263 154 115 0 chr15 79091976 79092210 -22288311 + MER21A LTR ERV1 1 261 -670 2725 176 43 28 chr15 79092253 79092788 -22287733 + MER21A LTR ERV1 389 931 0 411 211 0 21 chr15 79092788 79092883 -22287638 - MIR SINE MIR -109 153 61 1064 224 42 8 chr15 79093612 79093849 -22286672 - MLT1C LTR MaLR -2 465 221 378 261 62 106 chr15 79094019 79094261 -22286260 + MLT1K LTR MaLR 231 453 -135 2043 106 35 0 chr15 79094261 79094545 -22285976 - AluSx SINE Alu -18 294 1 378 261 62 106 chr15 79094545 79094659 -22285862 + MLT1K LTR MaLR 453 571 -17 361 286 143 6 chr15 79094727 79094902 -22285619 - L1M4 LINE L1 -2198 3948 3750 1901 181 0 0 chr15 79094920 79095223 -22285298 + AluJo SINE Alu 1 303 -9 269 231 74 83 chr15 79096876 79096997 -22283524 + MLT1K LTR MaLR 211 330 -258 436 259 9 9 chr15 79097757 79097869 -22282652 + MER5B DNA MER1_type 67 178 0 1186 253 148 34 chr15 79097909 79098672 -22281849 + L2 LINE L2 2451 3313 0 2294 119 0 0 chr15 79098699 79099011 -22281510 - AluSx SINE Alu 0 312 1 498 229 38 0 chr15 79099598 79099703 -22280818 + MER81 DNA DNA 2 110 -4 1844 164 0 7 chr15 79099925 79100218 -22280303 + AluJb SINE Alu 3 293 -19 589 289 92 61 chr15 79100936 79101151 -22279370 - L1ME4a LINE L1 -198 5923 5716 2126 126 17 0 chr15 79101151 79101445 -22279076 - AluSx SINE Alu -13 299 1 589 289 92 61 chr15 79101445 79101737 -22278784 - L1ME4a LINE L1 -405 5716 5400 35 95 0 0 chr15 79102046 79102151 -22278370 + AT_rich Low_complexity Low_complexity 1 105 0 2051 99 29 0 chr15 79102289 79102590 -22277931 - AluSx SINE Alu 0 309 1 300 284 71 24 chr15 79102778 79102905 -22277616 - L1ME3A LINE L1 -285 5885 5753 1348 0 34 0 chr15 79102927 79103194 -22277327 + (TTTTA)n Simple_repeat Simple_repeat 1 276 0 1925 150 0 0 chr15 79103196 79103476 -22277045 - AluSx SINE Alu -32 280 1 968 268 97 7 chr15 79103561 79103860 -22276661 - LTR16A LTR ERVL 0 450 125 1051 294 54 23 chr15 79104254 79104702 -22275819 - L2 LINE L2 -7 3306 2820 2176 136 24 32 chr15 79104702 79105078 -22275443 + THE1C LTR MaLR 2 374 -1 1051 294 54 23 chr15 79105078 79105267 -22275254 - L2 LINE L2 -493 2820 2638 458 281 92 17 chr15 79105328 79105566 -22274955 - L2 LINE L2 -1107 2207 1952 2046 134 0 3 chr15 79106843 79107142 -22273379 - L1PA14 LINE L1 0 6161 5864 654 204 23 6 chr15 79107288 79107460 -22273061 + CT-rich Low_complexity Low_complexity 4 178 0 814 163 0 0 chr15 79107478 79107601 -22272920 - AluJb SINE Alu -12 300 178 281 302 95 88 chr15 79107989 79108284 -22272237 - L2 LINE L2 -40 3232 2936 983 45 0 0 chr15 79108418 79108530 -22271991 - AluY SINE Alu -199 112 1 1815 167 10 0 chr15 79108850 79109143 -22271378 + AluJo SINE Alu 7 302 -10 561 331 32 28 chr15 79109253 79109501 -22271020 - MIR SINE MIR 0 262 14 2225 95 3 0 chr15 79109504 79109812 -22270709 + AluSp SINE Alu 1 309 0 180 256 0 0 chr15 79110047 79110086 -22270435 + MIR SINE MIR 110 148 -114 347 310 28 28 chr15 79110493 79110638 -22269883 + MIR3 SINE MIR 16 160 -48 6093 97 1 1 chr15 79110755 79111566 -22268955 - HSMAR2 DNA Mariner -1 1301 491 1382 174 0 0 chr15 79111566 79111773 -22268748 + AluJo SINE Alu 85 291 -21 3183 128 14 2 chr15 79111773 79112267 -22268254 - HSMAR2 DNA Mariner -801 501 2 386 277 143 0 chr15 79113262 79113374 -22267147 + L2 LINE L2 3140 3267 -5 542 191 116 34 chr15 79113950 79114097 -22266424 - MER103 DNA DNA -6 160 2 187 224 41 0 chr15 79114182 79114231 -22266290 - MIR SINE MIR -67 141 91 530 196 9 9 chr15 79115260 79115367 -22265154 + L1M4b LINE L1 1171 1277 -5582 1878 274 86 47 chr15 79115367 79116119 -22264402 - MER21B LTR ERV1 -81 782 1 2256 153 29 3 chr15 79116207 79116587 -22263934 - Tigger1 DNA MER2_type 0 2418 2029 936 131 23 29 chr15 79116589 79116720 -22263801 - MER65A LTR ERV1 0 445 314 2348 73 0 0 chr15 79116720 79117008 -22263513 - AluY SINE Alu -8 303 16 936 131 23 29 chr15 79117008 79117051 -22263470 - MER65A LTR ERV1 -131 314 272 227 333 95 0 chr15 79117157 79117241 -22263280 - MLT1F LTR MaLR -149 393 302 1191 68 0 25 chr15 79117241 79117403 -22263118 + L1P4 LINE L1 5645 5802 -359 1495 52 36 0 chr15 79117556 79117749 -22262772 - L1P4 LINE L1 -535 5626 5427 231 353 60 36 chr15 79117870 79118037 -22262484 - MIR3 SINE MIR -23 185 15 560 110 0 10 chr15 79118037 79118137 -22262384 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 834 191 0 8 chr15 79118140 79118271 -22262250 - FLAM_A SINE Alu -2 131 2 540 325 6 6 chr15 79118492 79118652 -22261869 + MIR3 SINE MIR 15 174 -34 517 230 18 18 chr15 79118694 79118807 -22261714 + MER81 DNA DNA 1 113 -1 1780 225 64 32 chr15 79118842 79119364 -22261157 + MLT1F1 LTR MaLR 1 559 -8 241 258 106 86 chr15 79119449 79119600 -22260921 + MLT1K LTR MaLR 185 338 -250 466 314 22 7 chr15 79119836 79119973 -22260548 - MIR3 SINE MIR -65 143 5 322 289 18 90 chr15 79120300 79120466 -22260055 - MLT1J2 LTR MaLR -50 400 247 358 343 73 7 chr15 79120659 79120796 -22259725 + MER91A DNA MER1_type 25 170 -26 275 73 0 0 chr15 79120855 79120896 -22259625 + Alu SINE Alu 257 297 -2 234 338 0 0 chr15 79121134 79121208 -22259313 - MIR3 SINE MIR -11 197 124 208 237 0 0 chr15 79121224 79121262 -22259259 + (TTG)n Simple_repeat Simple_repeat 2 39 0 885 302 66 58 chr15 79121428 79122081 -22258440 - L1MEd LINE L1 -4889 1230 573 1817 136 56 7 chr15 79122083 79122370 -22258151 + AluSx SINE Alu 1 301 -11 7048 49 0 1 chr15 79122425 79123286 -22257235 - L1PA5 LINE L1 -1060 5086 4227 7735 48 0 9 chr15 79123286 79124365 -22256156 + L1PA5 LINE L1 5084 6154 0 536 79 308 26 chr15 79124367 79124484 -22256037 + L1PA16 LINE L1 6016 6166 0 2082 118 3 10 chr15 79124513 79124810 -22255711 + AluSx SINE Alu 3 297 -15 300 243 28 104 chr15 79124814 79124958 -22255563 - L1MEd LINE L1 -5569 550 418 823 172 0 0 chr15 79125274 79125390 -22255131 + FLAM_C SINE Alu 3 118 -15 366 143 0 0 chr15 79125394 79125457 -22255064 + (CA)n Simple_repeat Simple_repeat 2 64 0 1378 233 87 53 chr15 79126452 79126925 -22253596 - LTR16C LTR ERVL 0 491 3 1734 144 30 36 chr15 79127556 79127861 -22252660 - AluJb SINE Alu -9 303 1 896 147 0 29 chr15 79128018 79128154 -22252367 + FLAM_C SINE Alu 1 132 -1 183 100 0 0 chr15 79128176 79128206 -22252315 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 281 336 76 0 chr15 79128497 79128616 -22251905 - L2 LINE L2 -4 3268 3141 240 296 9 74 chr15 79128630 79128738 -22251783 + MIR SINE MIR 18 118 -90 1957 108 91 3 chr15 79129610 79129897 -22250624 + AluSq SINE Alu 1 312 -1 1005 271 42 8 chr15 79130660 79130922 -22249599 + MER69 DNA AcHobo 18 288 -938 1175 141 55 50 chr15 79131027 79131247 -22249274 - MER65A LTR ERV1 -224 221 1 1329 238 91 34 chr15 79131247 79131663 -22248858 - MER65A-int LTR ERV1 0 4871 4432 1168 196 11 38 chr15 79131663 79131928 -22248593 - AluJb SINE Alu -10 302 45 770 208 83 16 chr15 79131929 79132121 -22248400 - MER65A-int LTR ERV1 -430 4441 4237 25 0 0 0 chr15 79132258 79132283 -22248238 + AT_rich Low_complexity Low_complexity 1 25 0 2251 96 0 10 chr15 79132290 79132581 -22247940 - AluSx SINE Alu -24 288 1 1481 249 62 30 chr15 79132582 79132952 -22247569 - MER65A-int LTR ERV1 -884 3987 3606 250 288 0 50 chr15 79133040 79133120 -22247401 - MER65A-int LTR ERV1 -729 5534 5459 463 154 0 13 chr15 79133122 79133200 -22247321 - MER65A-int LTR ERV1 -1137 3799 3723 180 0 0 0 chr15 79133528 79133548 -22246973 + (T)n Simple_repeat Simple_repeat 1 20 0 444 228 0 67 chr15 79133673 79133866 -22246655 + CT-rich Low_complexity Low_complexity 1 180 0 1236 257 125 42 chr15 79134741 79135414 -22245107 - MER65A-int LTR ERV1 -1299 5032 4304 500 218 76 119 chr15 79135424 79135768 -22244753 - MER65A-int LTR ERV1 -1632 4966 2729 684 179 89 16 chr15 79135776 79135899 -22244622 + FLAM_C SINE Alu 8 139 -4 988 187 26 26 chr15 79135960 79136190 -22244331 - MER65A-int LTR ERV1 -2584 4014 3785 682 164 25 57 chr15 79136306 79136465 -22244056 - MER65A-int LTR ERV1 -2869 3729 3576 695 219 0 0 chr15 79136471 79136590 -22243931 + FLAM_C SINE Alu 2 120 -23 291 133 0 0 chr15 79136599 79136644 -22243877 - MER65A-int LTR ERV1 -3014 3584 3540 1403 169 73 102 chr15 79136916 79137466 -22243055 - MER65A-int LTR ERV1 -3118 3480 2947 901 176 0 60 chr15 79137477 79137693 -22242828 - MER65A-int LTR ERV1 -6371 1749 1547 12781 148 20 4 chr15 79137694 79138463 -22242058 - L1PA12 LINE L1 0 6168 5413 2223 134 0 0 chr15 79138463 79138776 -22241745 - AluSq SINE Alu 0 313 1 12781 148 20 4 chr15 79138776 79140864 -22239657 - L1PA12 LINE L1 -755 5413 3282 7747 189 82 81 chr15 79140973 79141845 -22238676 - MER65A-int LTR ERV1 -2358 2513 1644 2249 117 3 0 chr15 79141845 79142153 -22238368 - AluSx SINE Alu -3 309 1 7747 189 82 81 chr15 79142153 79143706 -22236815 - MER65A-int LTR ERV1 -3227 1644 85 2767 131 37 16 chr15 79143791 79144227 -22236294 - MER65A LTR ERV1 0 445 1 3623 113 12 36 chr15 79144227 79144804 -22235717 - Tigger1 DNA MER2_type -388 2030 1468 867 159 106 0 chr15 79144804 79144955 -22235566 + AluSg/x SINE Alu 133 299 -13 7886 107 50 126 chr15 79144955 79145278 -22235243 - Tigger1 DNA MER2_type -945 1473 1127 2276 123 48 28 chr15 79145278 79145635 -22234886 - THE1B LTR MaLR 0 364 1 7886 107 50 126 chr15 79145635 79146415 -22234106 - Tigger1 DNA MER2_type -1291 1127 527 2292 93 0 0 chr15 79146415 79146706 -22233815 + AluY SINE Alu 13 303 -8 7886 107 50 126 chr15 79146706 79147196 -22233325 - Tigger1 DNA MER2_type -1891 527 1 2509 232 42 49 chr15 79147196 79147979 -22232542 + L1M4 LINE L1 1035 1833 -4813 1997 155 0 0 chr15 79147979 79148275 -22232246 + AluSx SINE Alu 1 296 -16 2509 232 42 49 chr15 79148275 79148516 -22232005 + L1M4 LINE L1 1833 2074 -4572 244 318 68 15 chr15 79148781 79148913 -22231608 + MIR SINE MIR 29 167 -95 447 19 0 0 chr15 79149161 79149213 -22231308 + (TA)n Simple_repeat Simple_repeat 2 53 0 927 93 8 23 chr15 79149213 79149342 -22231179 - FLAM_C SINE Alu -6 127 1 240 86 0 0 chr15 79149663 79149698 -22230823 + (GGGA)n Simple_repeat Simple_repeat 4 38 0 288 0 0 0 chr15 79149879 79149911 -22230610 + (CTG)n Simple_repeat Simple_repeat 1 32 0 4088 29 0 2 chr15 79151349 79151803 -22228718 - L1PA4 LINE L1 0 6155 5703 1514 29 0 0 chr15 79151803 79151975 -22228546 + L1PA4 LINE L1 5537 5708 -447 214 195 0 0 chr15 79152173 79152214 -22228307 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 1815 138 0 4 chr15 79153297 79153558 -22226963 + AluSq SINE Alu 1 260 -53 719 236 11 17 chr15 79154724 79154902 -22225619 - MIR SINE MIR -25 237 61 271 178 33 194 chr15 79154912 79155005 -22225516 - MER104 DNA Tc2 -1719 179 127 1665 176 26 10 chr15 79155005 79155311 -22225210 + AluJb SINE Alu 2 312 0 271 178 33 194 chr15 79155311 79155397 -22225124 - MER104 DNA Tc2 -1771 127 29 565 313 32 59 chr15 79155553 79155985 -22224536 - L1ME LINE L1 -304 5817 5407 284 227 15 15 chr15 79155998 79156064 -22224457 + CT-rich Low_complexity Low_complexity 1 66 0 579 279 81 100 chr15 79156283 79156536 -22223985 - L1ME LINE L1 -1102 5044 4788 2065 144 10 3 chr15 79156536 79156719 -22223802 - AluJb SINE Alu -5 307 120 239 0 32 0 chr15 79156719 79156750 -22223771 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2065 144 10 3 chr15 79156750 79156871 -22223650 - AluJb SINE Alu -192 120 1 579 279 81 100 chr15 79156871 79157614 -22222907 - L1ME LINE L1 -1358 4788 4067 2262 30 8 0 chr15 79157719 79157985 -22222536 + L1PA4 LINE L1 5768 6035 -120 372 298 25 0 chr15 79158182 79158303 -22222218 + L2 LINE L2 3147 3270 -2 2133 122 3 0 chr15 79159348 79159643 -22220878 - AluSx SINE Alu -16 296 1 237 172 0 17 chr15 79159924 79159982 -22220539 + T-rich Low_complexity Low_complexity 4 60 0 2065 148 0 3 chr15 79160839 79161144 -22219377 - AluJb SINE Alu -8 304 1 25 0 0 0 chr15 79162886 79162911 -22217610 + AT_rich Low_complexity Low_complexity 1 25 0 2820 69 12 30 chr15 79162924 79162977 -22217544 - L1MA1 LINE L1 0 6302 6250 2045 133 23 0 chr15 79162977 79163277 -22217244 - AluSp SINE Alu -6 307 1 2820 69 12 30 chr15 79163277 79163629 -22216892 - L1MA1 LINE L1 -52 6250 5904 212 207 0 52 chr15 79163629 79163677 -22216844 - MER5B DNA MER1_type -131 47 1 424 246 26 9 chr15 79163802 79163916 -22216605 - HsTC2 DNA Tc2 -619 1279 1164 778 163 42 179 chr15 79163919 79164308 -22216213 - MER51A LTR ERV1 -4 636 288 882 64 48 16 chr15 79164382 79164507 -22216014 - HERVL LTR ERVL -1380 4274 4146 656 135 0 10 chr15 79164683 79164779 -22215742 - AluSg SINE Alu -194 116 22 661 197 131 0 chr15 79164779 79164916 -22215605 - FRAM SINE Alu -10 166 12 387 227 129 92 chr15 79165721 79166017 -22214504 - LTR28 LTR ERV1 -286 139 11 326 310 35 9 chr15 79166108 79166224 -22214297 + LTR28 LTR ERV1 854 972 -48 * 634 236 90 7 chr15 79166221 79166365 -22214156 + LTR28 LTR ERV1 865 1020 0 12433 22 4 0 chr15 79166903 79168628 -22211893 + L1P2 LINE L1 3962 5690 -465 24 0 0 0 chr15 79169590 79169614 -22210907 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr15 79169649 79169671 -22210850 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr15 79169745 79169780 -22210741 + AT_rich Low_complexity Low_complexity 1 35 0 1837 168 0 3 chr15 79169780 79170089 -22210432 - AluJb SINE Alu 0 308 1 594 100 0 0 chr15 79170683 79170763 -22209758 + AluSg/x SINE Alu 216 295 -14 343 296 71 22 chr15 79171191 79171458 -22209063 + L1M4 LINE L1 2214 2493 -3653 1613 166 108 0 chr15 79171599 79171894 -22208627 - MER7A DNA MER2_type 0 346 22 303 281 49 92 chr15 79171935 79172305 -22208216 + L1M4 LINE L1 2663 3016 -3130 291 54 0 0 chr15 79172305 79172342 -22208179 + (ATG)n Simple_repeat Simple_repeat 3 39 0 2258 82 0 17 chr15 79172393 79172684 -22207837 + AluY SINE Alu 1 286 -25 194 330 46 18 chr15 79172722 79172831 -22207690 - MIR SINE MIR -50 212 101 5158 128 8 4 chr15 79172843 79173826 -22206695 - L1PA16 LINE L1 -9 6157 5144 1294 139 0 16 chr15 79173826 79174013 -22206508 - AluSq SINE Alu -71 242 59 5409 205 25 3 chr15 79174939 79176102 -22204419 - L1 LINE L1 -1008 5138 3951 207 0 0 0 chr15 79176110 79176133 -22204388 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1490 163 14 69 chr15 79176137 79176297 -22204224 - AluJo SINE Alu -31 281 143 2229 125 3 3 chr15 79176297 79176610 -22203911 - AluSq SINE Alu 0 313 1 1490 163 14 69 chr15 79176610 79176738 -22203783 - AluJo SINE Alu -169 143 9 1385 219 18 0 chr15 79177280 79177554 -22202967 - AluJo SINE Alu -33 279 1 463 246 8 8 chr15 79177555 79177677 -22202844 + L1ME2 LINE L1 6033 6154 -10 739 168 0 44 chr15 79177912 79178049 -22202472 + AluJ SINE Alu 2 132 -170 213 159 0 0 chr15 79178060 79178104 -22202417 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 273 272 48 0 chr15 79178104 79178207 -22202314 + L1MC4 LINE L1 7924 8031 -11 293 169 15 15 chr15 79178224 79178289 -22202232 + L1ME LINE L1 5721 5785 -336 265 275 143 69 chr15 79178439 79178628 -22201893 + MIR SINE MIR 9 211 -51 233 226 48 0 chr15 79179083 79179145 -22201376 + MER58 DNA MER1_type 2356 2420 0 276 333 5 50 chr15 79179388 79179610 -22200911 + MLT1J2 LTR MaLR 72 320 -130 1439 230 147 75 chr15 79179682 79180560 -22199961 + LTR1B LTR ERV1 1 1015 -5 257 265 0 24 chr15 79180593 79180676 -22199845 - L1ME LINE L1 -252 5869 5789 967 189 0 0 chr15 79180792 79180961 -22199560 + AluJ SINE Alu 132 300 -12 375 300 17 0 chr15 79180961 79181081 -22199440 + L1ME LINE L1 5666 5787 -334 402 343 19 5 chr15 79181950 79182157 -22198364 + L2 LINE L2 2201 2410 -904 219 269 15 45 chr15 79182214 79182281 -22198240 - L2 LINE L2 -20 3252 3188 1896 157 2 68 chr15 79182412 79182658 -22197863 - L1PA15-16 LINE L1 -3897 2952 2740 197 33 33 0 chr15 79182658 79182688 -22197833 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1896 157 2 68 chr15 79182688 79182836 -22197685 - L1PA15-16 LINE L1 -4109 2740 2584 4447 239 12 10 chr15 79182842 79184152 -22196369 - L1PA12 LINE L1 -4082 3502 2182 339 300 0 10 chr15 79184385 79184485 -22196036 - L1PA12 LINE L1 -5399 2182 2084 996 320 27 27 chr15 79184632 79185228 -22195293 - L1PA12 LINE L1 -6200 1374 1 261 0 0 0 chr15 79185284 79185313 -22195208 + (CAG)n Simple_repeat Simple_repeat 2 30 0 465 315 108 45 chr15 79185613 79187098 -22193423 + L1M4 LINE L1 3030 4607 -1539 389 278 24 18 chr15 79187388 79187557 -22192964 - L1MC4a LINE L1 -1923 5885 5716 1637 156 10 68 chr15 79188836 79189144 -22191377 - AluJb SINE Alu -18 294 5 237 254 0 0 chr15 79189437 79189492 -22191029 + L2 LINE L2 3213 3267 -5 384 300 54 0 chr15 79191083 79191213 -22189308 - MLT1K LTR MaLR -55 533 397 392 202 118 17 chr15 79191228 79191347 -22189174 - MLT1K LTR MaLR -162 426 296 357 75 0 0 chr15 79191425 79191478 -22189043 + (CA)n Simple_repeat Simple_repeat 2 54 0 258 236 14 28 chr15 79192188 79192260 -22188261 + MIR3 SINE MIR 90 160 -48 1287 246 129 14 chr15 79194362 79195111 -22185410 - L2 LINE L2 -69 3244 2418 2095 122 17 10 chr15 79195502 79195798 -22184723 - AluSx SINE Alu -14 298 1 730 233 36 87 chr15 79195953 79196228 -22184293 + MIR SINE MIR 2 262 0 198 200 22 0 chr15 79196277 79196322 -22184199 - L2 LINE L2 -8 3264 3219 592 140 0 30 chr15 79198205 79198305 -22182216 + AluJ/FLAM SINE Alu 3 99 -213 211 62 0 83 chr15 79198308 79198356 -22182165 + (CATAA)n Simple_repeat Simple_repeat 4 47 0 201 196 0 0 chr15 79198395 79198451 -22182070 + GA-rich Low_complexity Low_complexity 5 60 0 564 15 0 0 chr15 79198470 79198535 -22181986 + (TC)n Simple_repeat Simple_repeat 2 66 0 1741 180 3 3 chr15 79198535 79198818 -22181703 - AluJb SINE Alu -29 283 1 975 264 43 14 chr15 79198819 79199187 -22181334 - L1M4 LINE L1 -1069 5077 4699 228 67 0 0 chr15 79199191 79199221 -22181300 + (T)n Simple_repeat Simple_repeat 1 30 0 277 185 108 15 chr15 79200203 79200268 -22180253 + MER5B DNA MER1_type 7 77 -101 1996 135 0 3 chr15 79200380 79200703 -22179818 + AluSx SINE Alu 3 324 0 1137 145 12 0 chr15 79200703 79200875 -22179646 + AluJb SINE Alu 134 307 -5 558 215 32 19 chr15 79201406 79201564 -22178957 + MIR SINE MIR 102 261 -1 2715 174 45 16 chr15 79201765 79202324 -22178197 - MER90 LTR ERV1 0 575 1 253 209 173 9 chr15 79202369 79202479 -22178042 - L1ME4a LINE L1 -2 6119 5992 398 158 0 0 chr15 79202685 79202742 -22177779 - MER7A DNA MER2_type 0 346 290 2079 117 19 138 chr15 79202782 79202898 -22177623 + MER4A LTR ERV1 1 129 -535 468 0 0 0 chr15 79202898 79202950 -22177571 + (TA)n Simple_repeat Simple_repeat 2 53 0 2079 117 19 138 chr15 79202950 79203313 -22177208 + MER4A LTR ERV1 129 423 -241 591 230 31 42 chr15 79203344 79203535 -22176986 + MER4C LTR ERV1 277 465 0 * 1359 145 112 4 chr15 79203535 79203783 -22176738 - MER7A DNA MER2_type -73 273 1 461 217 38 0 chr15 79205479 79205585 -22174936 - MER5B DNA MER1_type 0 178 69 1229 161 0 14 chr15 79205687 79205898 -22174623 + AluSg/x SINE Alu 103 310 0 253 326 74 21 chr15 79206053 79206243 -22174278 + L2 LINE L2 2892 3091 -181 1522 182 26 4 chr15 79206484 79206748 -22173773 - AluJb SINE Alu -1 311 42 335 243 0 0 chr15 79208600 79208674 -22171847 + MIR SINE MIR 183 256 -6 603 229 4 8 chr15 79208675 79208929 -22171592 + (CCA)n Simple_repeat Simple_repeat 1 252 0 2383 16 0 0 chr15 79210259 79210515 -22170006 - AluYb8 SINE Alu -3 315 60 567 198 36 0 chr15 79211198 79211309 -22169212 - L2 LINE L2 -6 3307 3193 238 67 44 0 chr15 79211396 79211441 -22169080 + (TA)n Simple_repeat Simple_repeat 1 47 0 865 167 0 0 chr15 79211444 79211570 -22168951 - FLAM_C SINE Alu -7 126 1 1276 165 85 22 chr15 79212636 79212908 -22167613 - MLT1D LTR MaLR -35 470 182 673 225 8 85 chr15 79213095 79213119 -22167402 - MLT1D LTR MaLR -287 218 194 2381 100 0 0 chr15 79213119 79213419 -22167102 - AluSq SINE Alu -8 305 6 673 225 8 85 chr15 79213419 79213630 -22166891 - MLT1D LTR MaLR -311 194 1 1334 167 0 14 chr15 79213990 79214200 -22166321 - AluSg/x SINE Alu 0 310 104 279 286 0 13 chr15 79215505 79215582 -22164939 + (TG)n Simple_repeat Simple_repeat 1 76 0 370 376 56 0 chr15 79216231 79216428 -22164093 + MIR SINE MIR 2 209 -53 574 248 34 23 chr15 79216774 79217112 -22163409 - LTR16A LTR ERVL -7 443 54 413 243 8 63 chr15 79217253 79217382 -22163139 + MIR3 SINE MIR 73 194 -14 1371 172 9 0 chr15 79217843 79218070 -22162451 - AluJo SINE Alu 0 312 84 327 247 21 32 chr15 79218092 79218185 -22162336 - L2 LINE L2 0 3313 3222 180 152 0 0 chr15 79218706 79218739 -22161782 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 194 234 247 0 chr15 79218746 79218823 -22161698 - MIR SINE MIR -67 141 46 736 169 49 0 chr15 79218876 79219018 -22161503 - MER20 DNA MER1_type -42 177 29 213 175 0 0 chr15 79219106 79219146 -22161375 + CT-rich Low_complexity Low_complexity 1 40 0 242 225 256 31 chr15 79219960 79220089 -22160432 - L2 LINE L2 -186 3086 2929 225 307 68 0 chr15 79220462 79220550 -22159971 - L2 LINE L2 -535 2779 2686 257 322 110 17 chr15 79221233 79221351 -22159170 - L2 LINE L2 0 3272 3144 1338 179 18 9 chr15 79221790 79222019 -22158502 + AluJo SINE Alu 74 304 -8 271 230 69 30 chr15 79222163 79222340 -22158181 + L1MC/D LINE L1 5264 5398 -753 382 265 98 6 chr15 79222345 79222513 -22158008 - MIR3 SINE MIR -1 207 27 221 227 210 25 chr15 79222980 79223099 -22157422 + MIR SINE MIR 49 189 -73 452 325 52 19 chr15 79223135 79223347 -22157174 + MIR SINE MIR 11 229 -33 217 326 42 76 chr15 79223401 79223545 -22156976 + L2 LINE L2 3098 3236 -36 278 278 69 0 chr15 79223568 79223640 -22156881 - MIR SINE MIR -59 149 73 272 297 40 0 chr15 79223658 79223732 -22156789 + L2 LINE L2 3102 3178 -94 902 223 25 20 chr15 79223778 79223975 -22156546 - MIR SINE MIR -4 258 61 1132 171 57 0 chr15 79224381 79224609 -22155912 + L1MA9 LINE L1 5836 6076 -236 916 224 83 18 chr15 79224769 79224997 -22155524 + MIR SINE MIR 16 258 -4 286 174 58 0 chr15 79225062 79225131 -22155390 + L1MA9 LINE L1 6218 6290 -22 814 30 61 0 chr15 79225133 79225232 -22155289 - AluY SINE Alu -10 301 197 6682 113 185 68 chr15 79225232 79226751 -22153770 + pTR5 LTR ERV1 743 2438 0 1507 84 0 61 chr15 79226754 79226967 -22153554 - AluY SINE Alu -111 200 1 774 263 86 7 chr15 79227961 79228290 -22152231 - LTR16C LTR ERVL -35 456 71 306 298 6 30 chr15 79228387 79228555 -22151966 + CT-rich Low_complexity Low_complexity 2 165 0 183 80 0 0 chr15 79229234 79229259 -22151262 + (TC)n Simple_repeat Simple_repeat 2 26 0 1111 175 3 140 chr15 79229552 79229682 -22150839 - AluJo SINE Alu -60 252 182 2212 132 0 0 chr15 79229682 79229985 -22150536 - AluSx SINE Alu -9 303 1 1111 175 3 140 chr15 79229985 79230146 -22150375 - AluJo SINE Alu -130 182 1 326 377 24 6 chr15 79230172 79230339 -22150182 - L2 LINE L2 -213 3059 2890 260 294 92 84 chr15 79230996 79231196 -22149325 + MIR SINE MIR 20 224 -38 2836 132 32 5 chr15 79231196 79231636 -22148885 - LTR47A LTR ERVL 0 452 1 260 294 92 84 chr15 79231636 79231673 -22148848 + MIR SINE MIR 224 259 -3 969 321 53 41 chr15 79232013 79232537 -22147984 - L2 LINE L2 0 3313 2797 1689 186 9 15 chr15 79232537 79232876 -22147645 + L1MC2 LINE L1 6008 6344 0 1885 157 3 26 chr15 79232879 79233192 -22147329 + AluJo SINE Alu 1 306 -6 969 321 53 41 chr15 79233192 79233492 -22147029 - L2 LINE L2 -517 2796 2458 646 302 56 22 chr15 79233491 79233723 -22146798 - MIR SINE MIR 0 262 23 * 373 255 18 140 chr15 79233738 79234024 -22146497 - L2 LINE L2 -854 2460 2210 233 306 147 32 chr15 79234242 79234399 -22146122 + MIR3 SINE MIR 21 195 -13 299 294 59 25 chr15 79234688 79234807 -22145714 - MIR SINE MIR -80 182 60 131 59 0 0 chr15 79234945 79235167 -22145354 + AT_rich Low_complexity Low_complexity 1 222 0 204 211 211 0 chr15 79235194 79235251 -22145270 - MER5A DNA MER1_type -3 186 118 181 314 128 39 chr15 79235407 79235509 -22145012 - MIR SINE MIR -78 130 20 609 219 158 0 chr15 79236551 79236697 -22143824 - MER5A DNA MER1_type -4 185 17 240 225 169 14 chr15 79236775 79236846 -22143675 + MIR SINE MIR 20 101 -161 22 0 0 0 chr15 79236962 79236984 -22143537 + AT_rich Low_complexity Low_complexity 1 22 0 647 200 0 17 chr15 79236984 79237104 -22143417 - FLAM_A SINE Alu -15 118 1 199 220 20 0 chr15 79237124 79237174 -22143347 + L2 LINE L2 3210 3260 -12 201 139 0 0 chr15 79238263 79238306 -22142215 + (T)n Simple_repeat Simple_repeat 1 43 0 311 291 201 15 chr15 79238768 79238967 -22141554 - MIR SINE MIR -8 254 19 2360 92 0 0 chr15 79239299 79239592 -22140929 + AluSx SINE Alu 1 293 -19 279 0 0 0 chr15 79239592 79239623 -22140898 + (TA)n Simple_repeat Simple_repeat 2 32 0 3429 123 2 2 chr15 79339629 79340190 -22040331 - L1P3 LINE L1 -4764 1697 1137 616 105 0 0 chr15 79340189 79340275 -22040246 - L1P3 LINE L1 -6366 95 10 * 291 328 49 9 chr15 79340642 79340987 -22039534 + L1ME4a LINE L1 2132 2490 -3656 22 0 0 0 chr15 79341072 79341094 -22039427 + AT_rich Low_complexity Low_complexity 1 22 0 596 272 24 58 chr15 79341230 79341645 -22038876 + L1ME4a LINE L1 4016 4416 -1730 28198 76 5 0 chr15 79341745 79346494 -22034027 + L1PA6 LINE L1 1384 6153 -1 619 297 16 4 chr15 79346667 79346916 -22033605 - HAL1 LINE L1 -865 1642 1391 691 231 56 50 chr15 79347024 79347384 -22033137 - L1MC5 LINE L1 -45 7916 7555 234 360 47 0 chr15 79347967 79348117 -22032404 + L1ME4a LINE L1 5506 5662 -459 261 146 0 0 chr15 79348121 79348169 -22032352 + (CA)n Simple_repeat Simple_repeat 1 48 0 330 293 48 18 chr15 79348435 79348602 -22031919 + L1ME4a LINE L1 5941 6112 -9 650 261 155 23 chr15 79348641 79348905 -22031616 - L3 LINE CR1 -83 1494 1196 27 62 0 0 chr15 79349440 79349488 -22031033 + AT_rich Low_complexity Low_complexity 1 48 0 1834 98 7 7 chr15 79349653 79349927 -22030594 + LTR12 LTR ERV1 1 274 -440 248 263 30 20 chr15 79349932 79350031 -22030490 + LTR30 LTR ERV1 544 643 -79 524 168 21 0 chr15 79350033 79350128 -22030393 + LTR12 LTR ERV1 615 711 -3 2067 112 13 39 chr15 79350232 79350537 -22029984 + AluY SINE Alu 1 297 -14 1752 211 15 20 chr15 79350563 79350971 -22029550 - MLT2D LTR ERVL -8 406 1 370 304 127 6 chr15 79350979 79351137 -22029384 + L1ME4a LINE L1 5729 5905 -216 22 0 0 0 chr15 79351245 79351267 -22029254 + AT_rich Low_complexity Low_complexity 1 22 0 1959 162 8 30 chr15 79351810 79352180 -22028341 + MLT1A1 LTR MaLR 4 365 0 188 0 37 156 chr15 79352500 79352609 -22027912 + (CTCTG)n Simple_repeat Simple_repeat 5 100 0 295 339 8 8 chr15 79352613 79352734 -22027787 - LTR33 LTR ERVL -362 159 39 2229 98 3 7 chr15 79353810 79354106 -22026415 + AluSq SINE Alu 1 295 -18 201 158 0 26 chr15 79354470 79354482 -22026039 + CT-rich Low_complexity Low_complexity 2 13 -25 2018 153 0 7 chr15 79354482 79354790 -22025731 - AluJb SINE Alu -6 306 1 201 158 0 26 chr15 79354790 79354815 -22025706 + CT-rich Low_complexity Low_complexity 13 38 0 216 0 0 0 chr15 79355496 79355520 -22025001 + (T)n Simple_repeat Simple_repeat 1 24 0 1894 125 0 30 chr15 79356387 79356684 -22023837 - AluSq SINE Alu -8 305 18 5811 180 14 3 chr15 79356716 79358245 -22022276 - L1MC1 LINE L1 0 6333 4789 28 29 0 0 chr15 79359230 79359265 -22021256 + AT_rich Low_complexity Low_complexity 1 35 0 379 293 57 74 chr15 79359454 79360140 -22020381 + L1MEd LINE L1 878 1551 -4865 2349 123 0 0 chr15 79360157 79360467 -22020054 + AluSg SINE Alu 1 310 0 393 264 55 33 chr15 79360551 79360733 -22019788 + L1MEd LINE L1 1723 1908 -4699 394 326 87 22 chr15 79360967 79361243 -22019278 + L1MEd LINE L1 2123 2416 -4010 2128 270 75 26 chr15 79361346 79362221 -22018300 + MER69 DNA AcHobo 345 1262 -1264 787 233 28 0 chr15 79363183 79363363 -22017158 - MER5A DNA MER1_type -1 188 4 2189 287 155 25 chr15 79363430 79364267 -22016254 + L2 LINE L2 1877 2604 -709 2498 57 0 16 chr15 79364267 79364583 -22015938 - AluY SINE Alu 0 311 1 2189 287 155 25 chr15 79364583 79364623 -22015898 + L2 LINE L2 2604 2637 -676 797 52 15 15 chr15 79364623 79364757 -22015764 + (TC)n Simple_repeat Simple_repeat 1 134 0 2189 287 155 25 chr15 79364757 79365104 -22015417 + L2 LINE L2 2637 3261 -52 282 286 79 8 chr15 79365247 79365373 -22015148 - MIR SINE MIR -56 206 72 356 310 127 39 chr15 79365716 79366181 -22014340 - L1M4 LINE L1 -747 5399 4894 433 346 68 58 chr15 79367413 79367812 -22012709 + L2 LINE L2 2808 3210 -62 336 206 123 0 chr15 79368489 79368562 -22011959 - MER63 DNA MER1_type -2 1059 978 694 153 25 0 chr15 79368567 79368685 -22011836 - MER63 DNA MER1_type -315 747 1 621 324 99 54 chr15 79369651 79370864 -22009657 + L2 LINE L2 2045 3313 0 524 319 16 0 chr15 79371144 79371332 -22009189 - LTR16B LTR ERVL -101 363 173 567 306 59 28 chr15 79371334 79371700 -22008821 - L1M4 LINE L1 -2259 3887 3503 252 0 0 0 chr15 79371700 79371728 -22008793 + (TG)n Simple_repeat Simple_repeat 2 29 0 567 306 59 28 chr15 79371728 79371821 -22008700 - L1M4 LINE L1 -2643 3503 3414 580 283 82 27 chr15 79371876 79372169 -22008352 - L1M4 LINE L1 -2809 3337 3029 297 374 37 0 chr15 79372839 79373053 -22007468 + HERVL LTR ERVL 3093 3314 -2340 813 281 4 19 chr15 79373733 79373996 -22006525 - L1ME1 LINE L1 -5 6161 5903 278 298 12 24 chr15 79376960 79377128 -22003393 - L1M4 LINE L1 -3021 3125 2960 900 177 30 35 chr15 79377949 79378152 -22002369 - MER20 DNA MER1_type 0 219 18 201 233 0 0 chr15 79378397 79378440 -22002081 + CT-rich Low_complexity Low_complexity 1 43 0 7257 47 0 5 chr15 79378641 79379605 -22000916 - L1PA5 LINE L1 -4 6150 5191 694 241 87 10 chr15 79379632 79379827 -22000694 - MER63A DNA MER1_type 0 210 1 319 343 39 22 chr15 79379928 79380106 -22000415 - L1ME1 LINE L1 -297 5824 5644 404 298 102 52 chr15 79380613 79380918 -21999603 + L1M4 LINE L1 4987 5306 -840 361 259 43 17 chr15 79381161 79381277 -21999244 - L1ME1 LINE L1 -1081 5065 4947 2407 119 13 21 chr15 79381804 79382182 -21998339 - THE1C LTR MaLR 0 375 1 1055 215 9 0 chr15 79384187 79384401 -21996120 - MER58A DNA MER1_type 0 224 9 257 282 19 29 chr15 79384802 79384905 -21995616 - MIR SINE MIR -79 183 82 540 191 61 30 chr15 79384913 79385044 -21995477 + MER45A DNA AcHobo 28 162 -16 230 243 14 68 chr15 79385060 79385134 -21995387 - MIR SINE MIR -173 89 20 316 282 51 8 chr15 79385359 79385476 -21995045 - MIR SINE MIR -65 197 76 375 247 67 72 chr15 79386126 79386290 -21994231 + MIR SINE MIR 32 198 -64 368 226 35 9 chr15 79386462 79386577 -21993944 - LTR33 LTR ERVL -8 513 396 715 245 43 29 chr15 79386692 79386899 -21993622 - LTR33 LTR ERVL -339 182 1 188 300 0 29 chr15 79387471 79387541 -21992980 - MIR SINE MIR -82 180 113 572 171 31 12 chr15 79387549 79387759 -21992762 + ORSL DNA AcHobo 33 275 0 482 269 36 12 chr15 79387821 79387988 -21992533 + MER5B DNA MER1_type 5 175 -3 2256 99 3 3 chr15 79388685 79388989 -21991532 + AluSq SINE Alu 1 304 -9 836 268 46 21 chr15 79389276 79389655 -21990866 + L2 LINE L2 2749 3133 -180 470 253 26 77 chr15 79390681 79390875 -21989646 + L2 LINE L2 3130 3313 0 195 100 0 0 chr15 79391198 79391228 -21989293 + (CA)n Simple_repeat Simple_repeat 2 31 0 182 150 25 0 chr15 79391231 79391271 -21989250 + GA-rich Low_complexity Low_complexity 1 41 0 1985 109 53 0 chr15 79391739 79391856 -21988665 + AluY SINE Alu 1 110 -201 189 0 0 0 chr15 79391856 79391877 -21988644 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1985 109 53 0 chr15 79391877 79392043 -21988478 + AluY SINE Alu 110 299 -12 331 231 29 19 chr15 79392363 79392467 -21988054 + MER112 DNA MER1_type 151 255 -5 284 383 28 6 chr15 79392487 79392667 -21987854 - MIR SINE MIR -23 239 56 303 255 49 0 chr15 79392737 79392839 -21987682 + L1ME4a LINE L1 5964 6070 -51 339 316 42 91 chr15 79393304 79393589 -21986932 + L2 LINE L2 3001 3271 -1 1701 163 39 0 chr15 79394251 79394534 -21985987 + AluJb SINE Alu 1 294 -18 569 287 96 5 chr15 79394971 79395159 -21985362 - MER63A DNA MER1_type -2 208 4 408 318 46 29 chr15 79396291 79396530 -21983991 - L1M4 LINE L1 -3019 3127 2885 23 54 0 0 chr15 79396532 79396569 -21983952 + AT_rich Low_complexity Low_complexity 1 37 0 2158 114 10 0 chr15 79396598 79396896 -21983625 - AluSp SINE Alu -12 301 1 504 331 114 45 chr15 79396976 79397396 -21983125 - L2 LINE L2 -7 3265 2817 770 285 113 9 chr15 79398009 79398476 -21982045 + Charlie7 DNA MER1_type 115 630 -1982 205 29 59 0 chr15 79398482 79398516 -21982005 + (TA)n Simple_repeat Simple_repeat 1 36 0 802 162 0 0 chr15 79398626 79398743 -21981778 + AluJ SINE Alu 1 117 -185 251 329 0 0 chr15 79400505 79400587 -21979934 - HERVL LTR ERVL -2376 3278 3197 893 314 6 3 chr15 79400630 79400983 -21979538 - HERVL LTR ERVL -2859 2905 2552 348 284 80 52 chr15 79401031 79401320 -21979201 - LTR50 LTR ERVL 0 795 499 406 268 147 16 chr15 79401456 79401646 -21978875 - LTR50 LTR ERVL -579 216 2 2108 105 0 7 chr15 79403158 79403485 -21977036 - AluSx SINE Alu 0 325 1 463 271 60 84 chr15 79404014 79404383 -21976138 - MLT1K LTR MaLR -69 519 160 1021 193 0 0 chr15 79405508 79405674 -21974847 + AluJ SINE Alu 126 291 -21 355 310 97 61 chr15 79406498 79406859 -21973662 + HAL1b LINE L1 361 734 -614 306 306 106 106 chr15 79408641 79408876 -21971645 - L2 LINE L2 0 3272 3038 523 256 30 24 chr15 79409178 79409342 -21971179 + MER96 DNA MER1_type? 5 169 -6 1690 182 51 19 chr15 79409623 79409997 -21970524 - MLT1B LTR MaLR -4 386 1 3149 91 2 0 chr15 79410617 79411055 -21969466 + L1PA10 LINE L1 5730 6168 0 282 200 0 46 chr15 79411192 79411208 -21969313 + GA-rich Low_complexity Low_complexity 5 20 -46 1745 185 6 13 chr15 79411208 79411521 -21969000 + AluJb SINE Alu 1 311 -1 282 200 0 46 chr15 79411521 79411569 -21968952 + GA-rich Low_complexity Low_complexity 20 66 0 359 281 85 110 chr15 79412612 79413049 -21967472 - L1M4 LINE L1 -3045 3101 2676 198 103 0 0 chr15 79413076 79413105 -21967416 + (TA)n Simple_repeat Simple_repeat 1 29 0 568 208 155 12 chr15 79413220 79413388 -21967133 - L1ME2 LINE L1 0 6164 5973 247 326 0 31 chr15 79413941 79414039 -21966482 + MLT1K LTR MaLR 111 205 -383 3720 141 51 18 chr15 79414079 79414828 -21965693 - LTR1B LTR ERV1 0 826 1 321 291 108 14 chr15 79414900 79415113 -21965408 + MLT1K LTR MaLR 344 576 -12 400 301 0 0 chr15 79415421 79415514 -21965007 + L2 LINE L2 3218 3310 -3 25 51 0 0 chr15 79415536 79415575 -21964946 + AT_rich Low_complexity Low_complexity 1 39 0 2576 190 21 18 chr15 79416009 79416524 -21963997 + LTR31 LTR ERV1 88 604 -15 26 64 0 0 chr15 79417492 79417539 -21962982 + AT_rich Low_complexity Low_complexity 1 47 0 26 0 0 0 chr15 79417566 79417592 -21962929 + AT_rich Low_complexity Low_complexity 1 26 0 701 268 37 0 chr15 79417656 79417846 -21962675 + MIR SINE MIR 65 261 -1 283 390 66 7 chr15 79418435 79418571 -21961950 - L2 LINE L2 -2 3270 3127 225 254 111 56 chr15 79419871 79419940 -21960581 + MIR3 SINE MIR 43 107 -101 1659 85 8 25 chr15 79419940 79420175 -21960346 - AluSg/x SINE Alu -10 302 72 225 254 111 56 chr15 79420175 79420231 -21960290 + MIR3 SINE MIR 107 175 -33 180 311 0 16 chr15 79421067 79421128 -21959393 - MIR3 SINE MIR -9 199 140 801 296 0 5 chr15 79421161 79421360 -21959161 - MIR SINE MIR -6 256 59 362 298 35 9 chr15 79421549 79421663 -21958858 + MIR SINE MIR 75 191 -71 217 318 167 20 chr15 79421688 79421886 -21958635 - L2 LINE L2 -1218 2096 1870 638 158 16 33 chr15 79421901 79422084 -21958437 + CT-rich Low_complexity Low_complexity 1 180 0 233 304 31 29 chr15 79422174 79422377 -21958144 - L2 LINE L2 -1544 1770 1512 384 255 77 79 chr15 79422599 79422811 -21957710 + MIR SINE MIR 3 212 -50 2578 79 0 6 chr15 79423821 79424176 -21956345 + L1PA13 LINE L1 5809 6161 -2 332 306 13 19 chr15 79424665 79424822 -21955699 - MIR SINE MIR -1 261 106 757 317 89 20 chr15 79424826 79425217 -21955304 + L2 LINE L2 2886 3303 -10 237 241 19 19 chr15 79425216 79425270 -21955251 + L2 LINE L2 3210 3263 -9 * 371 298 94 86 chr15 79425541 79425594 -21954927 - L1MEd LINE L1 -4925 1194 1143 246 62 0 0 chr15 79425594 79425626 -21954895 + (TTG)n Simple_repeat Simple_repeat 2 33 0 371 298 94 86 chr15 79425626 79425817 -21954704 - L1MEd LINE L1 -4976 1143 948 24 53 0 0 chr15 79426582 79426620 -21953901 + AT_rich Low_complexity Low_complexity 1 38 0 843 245 65 10 chr15 79427484 79427684 -21952837 - MIR SINE MIR -49 213 3 237 278 125 36 chr15 79427760 79428008 -21952513 - L1M4 LINE L1 -1926 4220 3951 994 161 6 12 chr15 79428215 79428383 -21952138 + AluJb SINE Alu 87 253 -59 1128 264 41 24 chr15 79428402 79428815 -21951706 - L1ME3A LINE L1 -67 6103 5684 348 237 62 51 chr15 79428848 79429025 -21951496 - L1ME3A LINE L1 -2635 3511 3333 282 299 37 0 chr15 79429268 79429402 -21951119 - L1ME3A LINE L1 -3131 3015 2877 367 265 100 31 chr15 79429428 79429644 -21950877 + MLT1J2 LTR MaLR 39 269 -177 25 0 0 0 chr15 79429820 79429845 -21950676 + AT_rich Low_complexity Low_complexity 1 25 0 712 193 32 0 chr15 79430146 79430395 -21950126 + L1MA9 LINE L1 5938 6290 -22 247 259 187 18 chr15 79430441 79430719 -21949802 - L1ME3A LINE L1 -3648 2498 2174 22 35 0 0 chr15 79430832 79430861 -21949660 + AT_rich Low_complexity Low_complexity 1 29 0 392 37 19 0 chr15 79430861 79430915 -21949606 + (CA)n Simple_repeat Simple_repeat 2 56 0 2425 91 0 0 chr15 79431570 79431878 -21948643 + AluSc SINE Alu 1 308 -1 504 0 0 0 chr15 79432035 79432091 -21948430 + (TA)n Simple_repeat Simple_repeat 1 56 0 2017 64 4 19 chr15 79432103 79432369 -21948152 - AluY SINE Alu -16 295 34 8966 181 66 71 chr15 79432369 79434118 -21946403 - L1MC3 LINE L1 -100 7685 5929 1770 184 16 58 chr15 79434118 79434455 -21946066 + MLT1A1 LTR MaLR 1 322 -43 2132 134 3 0 chr15 79434455 79434753 -21945768 - AluSx SINE Alu -13 299 1 1770 184 16 58 chr15 79434753 79434796 -21945725 + MLT1A1 LTR MaLR 322 365 0 8966 181 66 71 chr15 79434796 79435062 -21945459 - L1MC3 LINE L1 -1856 5929 5663 1907 139 30 7 chr15 79435062 79435365 -21945156 + AluJb SINE Alu 1 310 -2 8966 181 66 71 chr15 79435365 79435892 -21944629 - L1MC3 LINE L1 -2122 5663 5144 384 238 211 9 chr15 79435879 79436102 -21944419 - L1MC3 LINE L1 -1593 4553 4286 * 21 0 0 0 chr15 79436828 79436849 -21943672 + AT_rich Low_complexity Low_complexity 1 21 0 518 293 134 25 chr15 79437016 79437620 -21942901 - L1MC4a LINE L1 -1879 5929 5260 1823 164 0 4 chr15 79437700 79437995 -21942526 - AluJb SINE Alu 0 301 8 236 261 0 0 chr15 79438253 79438299 -21942222 + polypurine Low_complexity Low_complexity 5 50 0 235 285 32 57 chr15 79439748 79439871 -21940650 - MIR SINE MIR -73 189 70 1999 123 0 53 chr15 79440027 79440154 -21940367 + AluSx SINE Alu 1 133 -179 7122 70 7 0 chr15 79440154 79441883 -21938638 + L1PA6 LINE L1 4397 6145 -9 448 56 28 0 chr15 79441889 79441961 -21938560 + (TA)n Simple_repeat Simple_repeat 1 74 0 2586 81 3 3 chr15 79441961 79442318 -21938203 + L1PB1 LINE L1 5794 6150 -1 1999 123 0 53 chr15 79442318 79442483 -21938038 + AluSx SINE Alu 136 285 -27 243 265 84 12 chr15 79443319 79443402 -21937119 - MIR3 SINE MIR -31 177 89 286 22 0 44 chr15 79443567 79443612 -21936909 + (TTA)n Simple_repeat Simple_repeat 3 45 0 738 220 108 50 chr15 79443635 79443876 -21936645 + MER21B LTR ERV1 24 278 -585 2448 77 0 0 chr15 79444503 79444801 -21935720 - AluY SINE Alu -13 298 1 406 294 147 31 chr15 79445791 79446179 -21934342 - L1ME4a LINE L1 -204 5917 5485 914 233 143 62 chr15 79446391 79446858 -21933663 + MLT1D LTR MaLR 1 505 0 470 265 160 6 chr15 79447226 79447407 -21933114 + MER3 DNA MER1_type 1 209 0 388 230 20 50 chr15 79447445 79447545 -21932976 + MIR SINE MIR 2 98 -164 2104 131 51 6 chr15 79447718 79448068 -21932453 - L1PB1 LINE L1 -1 6150 5785 444 139 20 40 chr15 79448068 79448219 -21932302 + (TA)n Simple_repeat Simple_repeat 1 148 0 807 128 7 7 chr15 79448219 79448360 -21932161 - L1PB1 LINE L1 -360 5791 5651 233 31 0 0 chr15 79448460 79448492 -21932029 - AluJb SINE Alu -270 32 1 3121 74 12 0 chr15 79448492 79448909 -21931612 - L1PA13 LINE L1 -5 6158 5737 2183 108 26 0 chr15 79449300 79449605 -21930916 - AluSp SINE Alu 0 313 1 364 239 17 53 chr15 79449635 79449786 -21930735 - MLT1I LTR MaLR -268 141 1 347 212 35 12 chr15 79450395 79450480 -21930041 - L2 LINE L2 -16 3297 3211 693 289 81 8 chr15 79450582 79450817 -21929704 - MIR SINE MIR 0 262 11 444 320 52 0 chr15 79450827 79451021 -21929500 - L2 LINE L2 -1119 2195 1992 1368 186 0 3 chr15 79451264 79451554 -21928967 - L1P LINE L1 -1201 4945 4656 5835 122 3 13 chr15 79451554 79452727 -21927794 + L1PA15 LINE L1 5027 6165 0 235 125 25 0 chr15 79452987 79453027 -21927494 - Charlie3 DNA MER1_type -4 2706 2666 29 70 0 0 chr15 79453128 79453185 -21927336 + AT_rich Low_complexity Low_complexity 1 57 0 1442 135 10 56 chr15 79453503 79453806 -21926715 + L1MB3 LINE L1 5696 5984 -199 594 227 20 7 chr15 79453926 79454076 -21926445 - MLT1J LTR MaLR -295 216 65 2034 148 0 3 chr15 79454183 79454486 -21926035 - AluSx SINE Alu -10 302 1 202 346 10 50 chr15 79454503 79454604 -21925917 + MIR3 SINE MIR 3 99 -109 373 277 217 12 chr15 79454618 79454784 -21925737 + MIR SINE MIR 5 204 -58 694 189 0 8 chr15 79455021 79455148 -21925373 - FLAM_A SINE Alu -11 131 6 23 0 0 0 chr15 79455310 79455333 -21925188 + AT_rich Low_complexity Low_complexity 1 23 0 647 285 50 57 chr15 79455756 79456195 -21924326 + L1M4 LINE L1 3504 3939 -2207 216 195 0 0 chr15 79456208 79456249 -21924272 + A-rich Low_complexity Low_complexity 2 42 0 23 54 0 0 chr15 79456553 79456590 -21923931 + AT_rich Low_complexity Low_complexity 1 37 0 4503 242 25 31 chr15 79456710 79459165 -21921356 + L1PA13 LINE L1 1 2977 -3820 2290 124 7 0 chr15 79459165 79459472 -21921049 - AluSx SINE Alu -2 310 2 4503 242 25 31 chr15 79459472 79460079 -21920442 + L1PA13 LINE L1 2977 3586 -3211 347 296 63 19 chr15 79460990 79461149 -21919372 + MIR SINE MIR 91 256 -6 820 183 0 0 chr15 79461164 79461301 -21919220 + FLAM_C SINE Alu 1 137 -6 2170 120 3 0 chr15 79461307 79461599 -21918922 + AluSq SINE Alu 1 293 -20 2468 80 0 0 chr15 79461972 79462272 -21918249 + AluSx SINE Alu 1 300 -12 812 244 36 23 chr15 79462796 79463017 -21917504 + MIR SINE MIR 2 225 -37 501 308 105 32 chr15 79463578 79463893 -21916628 + HAL1b LINE L1 333 670 -678 622 114 9 0 chr15 79464032 79464137 -21916384 - L1MA5 LINE L1 0 6300 6195 5057 163 19 5 chr15 79464281 79465465 -21915056 - L1MA5 LINE L1 -146 6154 4951 297 250 51 51 chr15 79466120 79466276 -21914245 + L1ME4a LINE L1 5966 6121 0 225 196 0 0 chr15 79466454 79466505 -21914016 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1988 159 0 0 chr15 79466896 79467197 -21913324 + AluJo SINE Alu 1 301 -11 315 265 143 72 chr15 79467314 79467537 -21912984 - L1ME LINE L1 -490 5631 5393 498 61 0 0 chr15 79468427 79468493 -21912028 + (CA)n Simple_repeat Simple_repeat 2 67 0 2318 99 0 0 chr15 79469209 79469512 -21911009 + AluY SINE Alu 1 303 -8 265 240 140 40 chr15 79469528 79469628 -21910893 + MIR3 SINE MIR 7 116 -92 254 376 34 8 chr15 79469670 79469787 -21910734 + MIR SINE MIR 108 227 -35 233 309 6 12 chr15 79469788 79469871 -21910650 + MIR3 SINE MIR 101 183 -25 465 280 21 48 chr15 79470685 79470871 -21909650 - L2 LINE L2 -35 3278 3098 396 209 66 39 chr15 79470907 79471089 -21909432 + L1MC3 LINE L1 6905 7091 -694 274 278 0 22 chr15 79471095 79471185 -21909336 + MLT1F1 LTR MaLR 35 122 -445 2473 157 44 4 chr15 79471195 79471674 -21908847 + L1MC3 LINE L1 7200 7697 -88 334 297 36 9 chr15 79472433 79472544 -21907977 + MIR SINE MIR 29 142 -120 2403 49 0 0 chr15 79472684 79473008 -21907513 + AluY SINE Alu 1 324 0 817 245 42 45 chr15 79473141 79473476 -21907045 - L1ME2 LINE L1 -9 6155 5822 943 296 102 8 chr15 79473494 79474281 -21906240 - L1MEc LINE L1 -3657 2558 1728 755 309 37 15 chr15 79474283 79474746 -21905775 - L1M4 LINE L1 -1721 4607 4135 576 287 83 0 chr15 79474906 79475122 -21905399 + L1M4 LINE L1 3692 3925 -2221 280 208 69 10 chr15 79475179 79475280 -21905241 + L1M4 LINE L1 4502 4608 -1538 2976 154 7 28 chr15 79475287 79475398 -21905123 - L1MA4 LINE L1 -5 6295 6183 2324 169 28 12 chr15 79475398 79475823 -21904698 - MSTB1 LTR MaLR 0 432 1 2976 154 7 28 chr15 79475823 79476290 -21904231 - L1MA4 LINE L1 -117 6183 5729 2650 225 27 19 chr15 79476291 79477144 -21903377 - L1M4 LINE L1 -4129 2199 1340 * 6395 139 30 11 chr15 79477137 79479338 -21901183 - L1MA2 LINE L1 0 7723 5493 5699 109 58 15 chr15 79479334 79480308 -21900213 - L1MA2 LINE L1 -4774 2791 1776 * 6339 155 21 4 chr15 79480300 79481437 -21899084 - L1M4 LINE L1 -4166 1162 7 2473 244 86 41 chr15 79481442 79482915 -21897606 + L1ME3A LINE L1 4616 6170 0 1846 157 13 7 chr15 79483383 79483688 -21896833 + AluJb SINE Alu 1 307 -5 22 0 0 0 chr15 79484478 79484500 -21896021 + AT_rich Low_complexity Low_complexity 1 22 0 379 289 145 13 chr15 79485663 79485822 -21894699 + MIR SINE MIR 12 191 -71 388 237 30 22 chr15 79487239 79487374 -21893147 + HAL1b LINE L1 808 943 -405 207 0 0 0 chr15 79488347 79488370 -21892151 + (TTA)n Simple_repeat Simple_repeat 2 24 0 5122 81 16 34 chr15 79488389 79489176 -21891345 - L1PA10 LINE L1 -2 6166 5394 5985 170 16 8 chr15 79489471 79490665 -21889856 - L1P5 LINE L1 -525 5626 4418 2416 82 23 14 chr15 79490665 79491017 -21889504 + THE1A LTR MaLR 1 355 0 5985 170 16 8 chr15 79491017 79491456 -21889065 - L1P5 LINE L1 -1733 4418 3984 803 287 121 18 chr15 79491904 79492301 -21888220 - LTR16A1 LTR ERVL -18 439 2 380 297 41 7 chr15 79492554 79492699 -21887822 - MLT1G1 LTR MaLR -2 593 444 301 257 0 0 chr15 79492777 79492851 -21887670 - MLT1G1 LTR MaLR -298 297 224 256 296 30 45 chr15 79493523 79493655 -21886866 - MLT1-int LTR MaLR -505 866 737 268 214 61 0 chr15 79493831 79493929 -21886592 - L1ME LINE L1 -5235 835 732 1253 157 5 0 chr15 79493933 79494124 -21886397 + AluJb SINE Alu 100 291 -21 714 268 131 66 chr15 79494124 79494803 -21885718 - L1ME LINE L1 -5336 734 12 21 0 0 0 chr15 79494915 79494936 -21885585 + AT_rich Low_complexity Low_complexity 1 21 0 261 279 23 23 chr15 79495018 79495104 -21885417 + MIR SINE MIR 58 143 -119 264 59 0 0 chr15 79496619 79496653 -21883868 + (CA)n Simple_repeat Simple_repeat 2 35 0 234 313 15 15 chr15 79496683 79496750 -21883771 + MIR SINE MIR 36 102 -106 249 33 0 0 chr15 79497282 79497312 -21883209 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 376 294 63 16 chr15 79498290 79498416 -21882105 - MER91A DNA MER1_type -30 166 35 905 244 107 7 chr15 79498716 79499024 -21881497 - L1MC4 LINE L1 -888 7154 6816 294 29 0 0 chr15 79499075 79499110 -21881411 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1158 158 74 5 chr15 79499966 79500168 -21880353 + MER20 DNA MER1_type 1 216 -3 21 0 0 0 chr15 79500200 79500221 -21880300 + AT_rich Low_complexity Low_complexity 1 21 0 483 317 81 54 chr15 79500260 79500670 -21879851 - L1M4 LINE L1 -932 5214 4794 304 232 108 16 chr15 79500743 79500937 -21879584 - L1M4 LINE L1 -1536 4610 4399 1732 192 80 70 chr15 79501311 79501921 -21878600 - L1ME2 LINE L1 -1 6163 5548 * 2017 232 74 106 chr15 79501920 79502397 -21878124 - L1MD3 LINE L1 -10 8027 7536 5998 113 31 2 chr15 79502397 79503666 -21876855 - L1PB3 LINE L1 0 6154 4873 2017 232 74 106 chr15 79503666 79504193 -21876328 - L1MD3 LINE L1 -501 7536 7104 408 20 0 0 chr15 79504193 79504242 -21876279 + (TG)n Simple_repeat Simple_repeat 2 50 0 2017 232 74 106 chr15 79504242 79504741 -21875780 - L1MD3 LINE L1 -933 7104 6591 8375 170 49 74 chr15 79504779 79506579 -21873942 + MER52A LTR ERV1 1 1755 0 326 274 91 28 chr15 79506617 79506833 -21873688 - L1ME LINE L1 -5303 1644 1350 476 310 79 60 chr15 79506942 79507422 -21873099 - L1ME LINE L1 -5543 1404 916 601 91 0 11 chr15 79507426 79507514 -21873007 - LTR12 LTR ERV1 -13 701 615 303 202 36 0 chr15 79507517 79507601 -21872920 - LTR30 LTR ERV1 -80 642 556 1388 117 23 94 chr15 79507601 79507962 -21872559 - LTR12 LTR ERV1 -401 2037 1 388 328 105 30 chr15 79508390 79508695 -21871826 - L1M4 LINE L1 -2309 3837 3510 7888 10 0 0 chr15 79508786 79509913 -21870608 - L1PA2 LINE L1 -1 6154 5027 368 336 39 73 chr15 79509941 79510432 -21870089 - L1M4 LINE L1 -2682 3464 2991 210 189 0 19 chr15 79510699 79510752 -21869769 + (TA)n Simple_repeat Simple_repeat 1 52 0 324 253 66 42 chr15 79510755 79510921 -21869600 + L1ME4a LINE L1 5930 6099 -22 645 319 130 11 chr15 79510949 79511404 -21869117 + L1ME4a LINE L1 5599 6107 -14 228 287 110 13 chr15 79512206 79512443 -21868078 + L1ME4a LINE L1 5850 6109 -12 471 277 24 70 chr15 79512873 79513086 -21867435 + MIR SINE MIR 1 203 -59 484 200 0 0 chr15 79513543 79513649 -21866872 - MER5A DNA MER1_type -80 109 4 346 288 86 31 chr15 79513720 79513883 -21866638 + MIR SINE MIR 84 255 -7 360 133 0 0 chr15 79514124 79514184 -21866337 + (T)n Simple_repeat Simple_repeat 1 60 0 219 224 0 0 chr15 79514529 79514578 -21865943 + MIR SINE MIR 149 197 -65 277 241 96 64 chr15 79516081 79516330 -21864191 + L1M4 LINE L1 3183 3439 -2707 453 50 50 0 chr15 79517000 79517080 -21863441 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 282 287 82 27 chr15 79517326 79517528 -21862993 - L1ME LINE L1 -431 5739 5530 * 875 119 9 15 chr15 79517500 79517679 -21862842 + L1P5 LINE L1 5662 5848 -308 277 246 29 51 chr15 79517700 79517838 -21862683 - L1ME LINE L1 -2340 5468 5334 2159 88 3 14 chr15 79517871 79518167 -21862354 - AluSx SINE Alu -19 293 1 349 183 73 12 chr15 79518853 79518935 -21861586 + L1MC4 LINE L1 6605 6691 -1351 239 313 12 0 chr15 79519182 79519262 -21861259 - MIR SINE MIR -56 206 126 467 320 57 0 chr15 79519472 79519666 -21860855 - MIR SINE MIR -43 219 15 619 247 37 0 chr15 79519685 79519847 -21860674 + MER58C DNA MER1_type 48 215 0 191 310 56 0 chr15 79520907 79520978 -21859543 - MIR SINE MIR -91 171 97 216 0 0 0 chr15 79521024 79521048 -21859473 + (A)n Simple_repeat Simple_repeat 1 24 0 1212 164 153 33 chr15 79521048 79521323 -21859198 + AluSg1 SINE Alu 1 308 -1 398 301 138 51 chr15 79521461 79521853 -21858668 - L1ME4a LINE L1 -157 5964 5539 511 325 36 21 chr15 79521990 79522184 -21858337 + MIR SINE MIR 9 205 -57 602 13 0 0 chr15 79522225 79522303 -21858218 - L1PA2 LINE L1 -1 6154 6077 * 40539 35 22 1 chr15 79522293 79528284 -21852237 - L1PA2 LINE L1 -33 6122 1 660 248 102 34 chr15 79528627 79528921 -21851600 + Charlie7 DNA MER1_type 43 356 -2256 239 232 36 18 chr15 79528996 79529108 -21851413 + (TATATG)n Simple_repeat Simple_repeat 3 116 0 205 256 15 44 chr15 79529199 79529336 -21851185 + (TATATG)n Simple_repeat Simple_repeat 2 134 0 452 259 23 84 chr15 79529377 79529640 -21850881 + Charlie7 DNA MER1_type 1536 1782 -830 800 209 105 77 chr15 79529641 79530252 -21850269 + Charlie7 DNA MER1_type 1904 2531 -81 183 205 0 0 chr15 79530319 79530358 -21850163 + (TA)n Simple_repeat Simple_repeat 1 39 0 656 179 83 6 chr15 79530734 79530890 -21849631 + MER63A DNA MER1_type 1 168 -42 965 240 18 0 chr15 79530890 79531107 -21849414 + L1PA12 LINE L1 806 1026 -6555 696 263 5 5 chr15 79531207 79531459 -21849062 + AluYb8 SINE Alu 106 357 0 196 375 12 0 chr15 79531624 79531704 -21848817 - L3 LINE CR1 -259 1318 1238 30 45 0 0 chr15 79531808 79531852 -21848669 + AT_rich Low_complexity Low_complexity 1 44 0 307 325 41 6 chr15 79532120 79532289 -21848232 - L1MC/D LINE L1 -1960 5848 5674 1082 249 129 46 chr15 79533025 79533437 -21847084 + L1MC4 LINE L1 7429 7902 -140 279 0 0 0 chr15 79533437 79533468 -21847053 + (TG)n Simple_repeat Simple_repeat 2 32 0 1082 249 129 46 chr15 79533468 79533621 -21846900 + L1MC4 LINE L1 7902 8041 -1 363 151 0 41 chr15 79533926 79533999 -21846522 - MER20 DNA MER1_type 0 219 150 384 171 0 0 chr15 79534008 79534078 -21846443 - MER20 DNA MER1_type 0 219 150 375 186 0 0 chr15 79534087 79534157 -21846364 - MER20 DNA MER1_type 0 219 150 1234 147 23 18 chr15 79534166 79534384 -21846137 - MER20 DNA MER1_type 0 219 1 272 231 26 13 chr15 79535358 79535436 -21845085 - Tigger5 DNA MER2_type -1 2322 2244 * 455 225 0 11 chr15 79535429 79535580 -21844941 - Tigger5 DNA MER2_type -2125 198 1 487 301 98 48 chr15 79535580 79535915 -21844606 - L1ME4a LINE L1 -215 5906 5555 20652 179 22 20 chr15 79536100 79536398 -21844123 + L1P4 LINE L1 647 943 -5220 2053 140 7 0 chr15 79536398 79536690 -21843831 - AluSq SINE Alu -19 294 1 20652 179 22 20 chr15 79536690 79541322 -21839199 + L1P4 LINE L1 943 5586 -577 4275 89 60 0 chr15 79541422 79542037 -21838484 + L1PA13 LINE L1 5497 6148 -15 396 0 0 0 chr15 79542174 79542218 -21838303 + (TC)n Simple_repeat Simple_repeat 1 44 0 189 0 0 0 chr15 79542221 79542242 -21838279 + (CA)n Simple_repeat Simple_repeat 1 21 0 432 350 11 32 chr15 79542278 79542464 -21838057 + MIR SINE MIR 23 204 -58 496 246 58 0 chr15 79543472 79543643 -21836878 - Charlie7 DNA MER1_type -403 2209 2029 219 242 32 0 chr15 79544500 79544562 -21835959 + GA-rich Low_complexity Low_complexity 1 64 0 1178 132 20 0 chr15 79544563 79544760 -21835761 + L1MC1 LINE L1 5433 5633 -700 1672 176 32 6 chr15 79544863 79545209 -21835312 + L1MC1 LINE L1 5862 6216 -117 1508 114 4 0 chr15 79545230 79545467 -21835054 - L1MA2 LINE L1 -3 6301 6064 649 124 26 26 chr15 79545467 79545579 -21834942 + L1MC1 LINE L1 6221 6333 0 1771 155 17 52 chr15 79545999 79546361 -21834160 + MLT1A1 LTR MaLR 5 353 -12 627 309 18 23 chr15 79546967 79547181 -21833340 + LTR33 LTR ERVL 1 213 -308 1051 193 104 30 chr15 79547181 79547638 -21832883 - MER67A LTR ERV1 0 661 2 295 305 68 0 chr15 79547676 79547794 -21832727 + LTR33 LTR ERVL 235 360 -161 590 278 27 39 chr15 79547942 79548201 -21832320 + LTR16C LTR ERVL 71 326 -165 567 177 21 43 chr15 79548204 79548345 -21832176 - MLT1H LTR MaLR -4 545 408 593 254 72 26 chr15 79548409 79548602 -21831919 - MLT1H LTR MaLR -248 301 100 610 310 27 54 chr15 79549695 79550030 -21830491 + MLT1I LTR MaLR 66 391 -18 635 289 139 33 chr15 79550054 79550135 -21830386 + L1M4 LINE L1 2207 2278 -3868 2224 115 0 28 chr15 79550135 79550456 -21830065 + AluSx SINE Alu 1 312 0 635 289 139 33 chr15 79550456 79550914 -21829607 + L1M4 LINE L1 2278 2803 -3343 1998 186 44 12 chr15 79550926 79551339 -21829182 - MSTB1 LTR MaLR 0 432 7 339 256 44 28 chr15 79551359 79551539 -21828982 + L1M4 LINE L1 2839 3021 -3125 294 291 8 0 chr15 79551633 79551760 -21828761 + L1M4 LINE L1 3174 3301 -2845 40103 50 27 2 chr15 79551776 79557777 -21822744 + L1PA2 LINE L1 3 6155 0 2722 46 3 0 chr15 79557787 79558138 -21822383 + L1PA4 LINE L1 5770 6121 -34 26 30 0 0 chr15 79558193 79558226 -21822295 + AT_rich Low_complexity Low_complexity 1 33 0 644 316 134 14 chr15 79558671 79559171 -21821350 + L1ME4a LINE L1 5562 6121 0 488 268 24 70 chr15 79559594 79559807 -21820714 + MIR SINE MIR 1 203 -59 498 228 122 11 chr15 79560186 79560351 -21820170 - MER5A DNA MER1_type 0 189 4 300 296 80 16 chr15 79560419 79560544 -21819977 + MIR SINE MIR 84 216 -46 294 106 0 0 chr15 79560825 79560872 -21819649 + (T)n Simple_repeat Simple_repeat 1 47 0 221 204 0 0 chr15 79561226 79561275 -21819246 + MIR SINE MIR 149 197 -65 341 231 104 80 chr15 79562687 79563024 -21817497 + L1M4 LINE L1 3095 3439 -2707 346 214 134 9 chr15 79563488 79563600 -21816921 + L1ME4a LINE L1 5955 6080 -41 738 17 68 0 chr15 79563692 79563810 -21816711 + (TAGA)n Simple_repeat Simple_repeat 1 126 0 390 307 113 23 chr15 79564002 79564259 -21816262 - L1MC/D LINE L1 -2002 5806 5527 * 920 129 53 18 chr15 79564236 79564407 -21816114 + L1PB3 LINE L1 5668 5844 -310 293 216 60 52 chr15 79564432 79564566 -21815955 - L1MC/D LINE L1 -2340 5468 5334 1201 211 134 0 chr15 79564569 79564844 -21815677 - SATR1 Satellite Satellite -145 325 14 22 0 0 0 chr15 79564920 79564942 -21815579 + AT_rich Low_complexity Low_complexity 1 22 0 390 244 6 31 chr15 79564984 79565144 -21815377 + (TTA)n Simple_repeat Simple_repeat 1 156 0 2622 150 100 8 chr15 79565149 79566040 -21814481 + SATR1 Satellite Satellite 1 972 -9 2395 150 108 5 chr15 79566073 79567324 -21813197 + SATR1 Satellite Satellite 1 1379 -1 1639 217 126 5 chr15 79567353 79567895 -21812626 - SATR1 Satellite Satellite -221 607 1 4534 12 8 0 chr15 79567895 79568409 -21812112 + L1PA4 LINE L1 4148 4665 -1481 8132 27 0 1 chr15 79568413 79569565 -21810956 + L1PA4 LINE L1 5004 6154 -1 30 0 0 0 chr15 79569577 79569607 -21810914 + AT_rich Low_complexity Low_complexity 1 30 0 825 90 41 8 chr15 79569607 79569729 -21810792 - L1MB3 LINE L1 -2 6181 6056 10174 26 0 1 chr15 79569831 79571731 -21808790 + L1PA2 LINE L1 4255 6153 -2 22 0 0 0 chr15 79571756 79571778 -21808743 + AT_rich Low_complexity Low_complexity 1 22 0 420 275 77 31 chr15 79571895 79571997 -21808524 + L1ME LINE L1 5438 5534 -587 1866 128 94 16 chr15 79571997 79572316 -21808205 - MER7A DNA MER2_type 0 346 5 420 275 77 31 chr15 79572316 79572435 -21808086 + L1ME LINE L1 5534 5669 -452 * 4816 102 6 0 chr15 79572422 79573082 -21807439 + L1PA13 LINE L1 5476 6139 -24 25 75 0 0 chr15 79573083 79573136 -21807385 + AT_rich Low_complexity Low_complexity 1 53 0 2592 23 7 7 chr15 79573200 79573505 -21807016 - AluY SINE Alu -6 305 1 352 197 0 0 chr15 79573506 79573567 -21806954 - Tigger3(Golem) DNA MER2_type -1 3028 2968 249 67 0 0 chr15 79573568 79573598 -21806923 - L1PA13 LINE L1 -27 6136 6107 1652 80 0 14 chr15 79573779 79573992 -21806529 + L1PA8 LINE L1 5956 6165 -7 2447 227 64 36 chr15 79574881 79575458 -21805063 - MLT1E LTR MaLR 0 593 1 452 288 89 53 chr15 79577548 79577850 -21802671 + L1M4 LINE L1 2489 2801 -3345 2167 116 6 9 chr15 79578125 79578452 -21802069 - L1MB2 LINE L1 0 6171 5846 186 43 0 0 chr15 79578651 79578674 -21801847 + (TA)n Simple_repeat Simple_repeat 2 24 0 2833 6 0 10 chr15 79578763 79579075 -21801446 - AluYa5 SINE Alu -2 309 1 29 28 0 0 chr15 79579570 79579606 -21800915 + AT_rich Low_complexity Low_complexity 1 36 0 2268 119 0 6 chr15 79580597 79580909 -21799612 - AluSg SINE Alu 0 310 1 458 267 52 100 chr15 79581261 79581626 -21798895 - MLT1I LTR MaLR -26 383 63 398 256 86 8 chr15 79581720 79581837 -21798684 - MIR3 SINE MIR -44 164 39 2350 134 90 8 chr15 79583212 79583599 -21796922 + MSTA LTR MaLR 10 428 0 1506 191 120 19 chr15 79583871 79584238 -21796283 + MLT1E1 LTR MaLR 2 405 -249 718 223 17 6 chr15 79584399 79584574 -21795947 - L1MC3 LINE L1 -420 7365 7189 2297 104 0 0 chr15 79584586 79584884 -21795637 - AluSx SINE Alu -14 298 1 23 0 0 0 chr15 79586304 79586327 -21794194 + AT_rich Low_complexity Low_complexity 1 23 0 182 243 86 29 chr15 79586481 79586551 -21793970 + L3 LINE CR1 1091 1164 -413 671 149 27 180 chr15 79586552 79586721 -21793800 + LTR49 LTR ERV1 1 152 -443 480 259 36 36 chr15 79587061 79587200 -21793321 - MER5A DNA MER1_type -1 188 50 567 315 81 8 chr15 79587792 79588027 -21792494 - MIR SINE MIR 0 262 11 408 323 46 0 chr15 79588038 79588233 -21792288 - L2 LINE L2 -1119 2195 1992 1920 143 0 0 chr15 79588350 79588637 -21791884 - L1PA15 LINE L1 0 6165 5879 230 242 30 0 chr15 79589138 79589204 -21791317 - MLT1D LTR MaLR -23 482 415 201 233 22 33 chr15 79589265 79589355 -21791166 + CT-rich Low_complexity Low_complexity 1 89 0 234 200 40 0 chr15 79589972 79590022 -21790499 + MIR SINE MIR 99 150 -58 210 330 68 0 chr15 79591259 79591362 -21789159 - L2 LINE L2 -2493 821 712 244 346 32 51 chr15 79591511 79591667 -21788854 - L2 LINE L2 -2819 495 343 1257 191 32 12 chr15 79591668 79591920 -21788601 + AluJo SINE Alu 1 257 -55 1137 191 53 10 chr15 79592638 79592847 -21787674 - MER20 DNA MER1_type -1 218 1 325 223 152 18 chr15 79592989 79593101 -21787420 + MIR SINE MIR 23 149 -59 265 225 0 35 chr15 79593293 79593462 -21787059 + G-rich Low_complexity Low_complexity 1 163 0 386 335 0 0 chr15 79593480 79593659 -21786862 + G-rich Low_complexity Low_complexity 1 179 0 1434 216 139 51 chr15 79595239 79595659 -21784862 + MLT2B2 LTR ERVL 1 469 -46 452 72 14 0 chr15 79595659 79595728 -21784793 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 1434 216 139 51 chr15 79595728 79595780 -21784741 + MLT2B2 LTR ERVL 469 515 0 2523 63 0 0 chr15 79595881 79596184 -21784337 - AluY SINE Alu -8 303 1 236 229 33 0 chr15 79597223 79597284 -21783237 + CT-rich Low_complexity Low_complexity 2 64 0 600 170 105 46 chr15 79598426 79598579 -21781942 - MLT1C LTR MaLR -289 178 17 2328 105 0 0 chr15 79599104 79599400 -21781121 - AluSx SINE Alu -16 296 1 201 283 0 0 chr15 79601925 79601978 -21778543 - MIR SINE MIR -15 247 195 1294 279 68 32 chr15 79602099 79602600 -21777921 + LTR33 LTR ERVL 3 521 0 10877 170 47 30 chr15 79602622 79605420 -21775101 - L1PA5 LINE L1 0 6154 3318 2206 103 0 16 chr15 79605898 79606208 -21774313 - AluY SINE Alu -6 305 1 3329 69 2 2 chr15 79606213 79606619 -21773902 - L1PA8 LINE L1 0 6172 5767 420 337 163 18 chr15 79606644 79606976 -21773545 - L1ME LINE L1 -477 5644 5265 29 70 0 0 chr15 79607429 79607486 -21773035 + AT_rich Low_complexity Low_complexity 1 57 0 250 125 25 0 chr15 79607587 79607627 -21772894 + Charlie3 DNA MER1_type 2666 2706 -4 6063 131 3 3 chr15 79607887 79609032 -21771489 - L1PA15 LINE L1 0 6165 5027 354 334 62 43 chr15 79609272 79609904 -21770617 + L1M4 LINE L1 3283 3926 -2220 237 248 29 105 chr15 79610055 79610102 -21770419 - MLT1L LTR MaLR -107 508 472 2283 110 7 0 chr15 79610102 79610402 -21770119 + AluSx SINE Alu 1 302 -10 237 248 29 105 chr15 79610402 79610459 -21770062 - MLT1L LTR MaLR -143 472 412 236 141 13 39 chr15 79610459 79610537 -21769984 + (TA)n Simple_repeat Simple_repeat 2 77 0 300 286 0 0 chr15 79610667 79610744 -21769777 - MLT1L LTR MaLR -382 233 157 21 0 0 0 chr15 79610868 79610889 -21769632 + AT_rich Low_complexity Low_complexity 1 21 0 303 289 52 0 chr15 79610893 79610990 -21769531 + L1M4 LINE L1 4035 4136 -2010 1924 127 52 86 chr15 79611203 79611589 -21768932 + THE1C LTR MaLR 3 375 0 520 338 93 29 chr15 79611594 79612027 -21768494 - L2 LINE L2 -215 3057 2583 1942 169 37 67 chr15 79612027 79612429 -21768092 + MLT1B LTR MaLR 1 390 0 520 338 93 29 chr15 79612429 79612522 -21767999 - L2 LINE L2 -689 2583 2497 261 196 49 18 chr15 79612529 79612619 -21767902 + L1M4 LINE L1 4140 4235 -1911 643 294 56 64 chr15 79612741 79613098 -21767423 + L3 LINE CR1 1222 1575 -2 228 35 0 0 chr15 79613693 79613722 -21766799 + (TG)n Simple_repeat Simple_repeat 2 30 0 217 298 48 48 chr15 79615097 79615201 -21765320 - L2 LINE L2 0 3272 3169 1188 205 133 13 chr15 79615973 79616275 -21764246 + MER58B DNA MER1_type 4 341 0 316 311 82 11 chr15 79618490 79618684 -21761837 - MLT1L LTR MaLR -302 209 1 261 254 0 0 chr15 79619473 79619532 -21760989 - MIR SINE MIR -6 256 198 203 0 37 0 chr15 79619861 79619888 -21760633 + (TG)n Simple_repeat Simple_repeat 1 28 0 313 374 110 4 chr15 79620094 79620321 -21760200 + L1 LINE L1 3593 3843 -2303 32295 41 33 2 chr15 79620331 79624297 -21756224 + L1P LINE L1 1 4091 -2055 26031 34 0 1 chr15 79624397 79627502 -21753019 - L1P LINE L1 -1114 5032 1930 1300 103 6 5 chr15 79627783 79627985 -21752536 + L1MB2 LINE L1 5830 6033 -138 2154 142 35 0 chr15 79628067 79628405 -21752116 - L1MC1 LINE L1 -18 6315 5966 2269 98 3 0 chr15 79628405 79628701 -21751820 - AluY SINE Alu -14 297 1 1675 106 4 49 chr15 79628703 79628968 -21751553 - LTR8 LTR ERV1 -438 253 1 1208 161 72 34 chr15 79629043 79629279 -21751242 + MLT1D LTR MaLR 1 245 -260 779 141 25 8 chr15 79629280 79629401 -21751120 + AluJo SINE Alu 12 134 -178 406 171 0 80 chr15 79629415 79629503 -21751018 + MLT1D LTR MaLR 276 356 -149 2501 102 69 3 chr15 79629506 79629867 -21750654 + MER1A DNA MER1_type 4 388 -141 404 207 302 18 chr15 79629978 79630147 -21750374 + MIR SINE MIR 45 261 -1 254 296 12 37 chr15 79630602 79630683 -21749838 + L2 LINE L2 3186 3264 -8 4656 50 8 0 chr15 79631112 79631710 -21748811 + L1P LINE L1 2 604 -5542 1041 56 0 0 chr15 79631810 79631935 -21748586 + L1P2 LINE L1 5591 5715 -439 20018 48 51 3 chr15 79632170 79634701 -21745820 + L1P LINE L1 1 2654 -3492 788 346 20 30 chr15 79635094 79635603 -21744918 - HAL1 LINE L1 -694 1813 1310 1331 68 0 0 chr15 79635780 79635942 -21744579 - L1PA14 LINE L1 -3 6158 5997 634 217 30 56 chr15 79636469 79636667 -21743854 + L1ME3A LINE L1 5973 6165 -5 2258 108 0 0 chr15 79636674 79636962 -21743559 + AluSc SINE Alu 1 288 -21 595 291 154 13 chr15 79637406 79637633 -21742888 - MIR SINE MIR -1 261 3 313 294 44 29 chr15 79638381 79638517 -21742004 - L2 LINE L2 -1 3271 3134 281 294 17 17 chr15 79638996 79639115 -21741406 - L2 LINE L2 -1022 2292 2174 736 118 29 29 chr15 79640300 79640436 -21740085 - MER53 DNA DNA -52 137 2 863 178 85 166 chr15 79640456 79640918 -21739603 + LTR50 LTR ERVL 222 782 -13 352 152 0 0 chr15 79641142 79641208 -21739313 + L1PB3 LINE L1 6082 6147 -7 26 0 0 0 chr15 79641208 79641234 -21739287 + AT_rich Low_complexity Low_complexity 1 26 0 675 306 14 17 chr15 79641485 79641773 -21738748 - HAL1b LINE L1 -572 776 490 264 313 47 62 chr15 79641912 79642040 -21738481 + L2 LINE L2 3147 3272 0 210 278 31 0 chr15 79642483 79642580 -21737941 + (TA)n Simple_repeat Simple_repeat 2 101 0 222 261 0 0 chr15 79643106 79643152 -21737369 - MER91 DNA MER1_type -3 193 148 24 0 0 0 chr15 79643324 79643348 -21737173 + AT_rich Low_complexity Low_complexity 1 24 0 1663 199 10 10 chr15 79643611 79643923 -21736598 - AluJo SINE Alu 0 312 1 2230 90 4 0 chr15 79644714 79645017 -21735504 - AluY SINE Alu 0 304 1 501 97 0 0 chr15 79645273 79645345 -21735176 + (TA)n Simple_repeat Simple_repeat 1 72 0 266 278 40 6 chr15 79646237 79646410 -21734111 + (TA)n Simple_repeat Simple_repeat 2 180 0 273 194 122 31 chr15 79646498 79646596 -21733925 + L1MC5 LINE L1 7818 7924 -37 233 270 113 0 chr15 79646706 79646821 -21733700 + L1M4 LINE L1 3912 4039 -2107 726 314 38 4 chr15 79646833 79647069 -21733452 - MIR SINE MIR -10 252 9 385 388 55 5 chr15 79647200 79647636 -21732885 + L1M4 LINE L1 4151 4608 -1538 1034 228 34 26 chr15 79647637 79648000 -21732521 + MLT1B LTR MaLR 1 390 0 977 195 11 0 chr15 79648085 79648270 -21732251 + L1MC4 LINE L1 7162 7348 -694 667 285 17 6 chr15 79648282 79648461 -21732060 + MIR SINE MIR 9 189 -73 2151 210 87 29 chr15 79648480 79649033 -21731488 + L1MC4 LINE L1 7366 7950 -92 180 273 0 0 chr15 79649046 79649101 -21731420 + (CA)n Simple_repeat Simple_repeat 2 56 0 288 0 0 0 chr15 79649185 79649217 -21731304 + (TG)n Simple_repeat Simple_repeat 1 32 0 504 234 16 8 chr15 79649219 79649347 -21731174 + L1MC4 LINE L1 7914 8042 0 693 267 24 0 chr15 79650309 79650474 -21730047 - MIR SINE MIR -17 245 77 482 222 62 37 chr15 79650858 79651020 -21729501 + MIR SINE MIR 70 235 -27 2127 133 3 0 chr15 79651662 79651971 -21728550 + AluSx SINE Alu 1 310 -2 2318 113 0 10 chr15 79652373 79652683 -21727838 + AluSg SINE Alu 1 307 -3 778 262 11 0 chr15 79652746 79652933 -21727588 + MER5A DNA MER1_type 1 189 0 346 335 32 32 chr15 79653949 79654104 -21726417 - MIR3 SINE MIR -9 199 45 451 164 78 43 chr15 79654346 79654462 -21726059 + MLT1D LTR MaLR 3 122 -383 33043 42 32 2 chr15 79654562 79658624 -21721897 - L1P LINE L1 -1961 4185 1 1181 57 0 0 chr15 79658859 79659000 -21721521 - L1P2 LINE L1 -439 5715 5575 1620 35 0 30 chr15 79659004 79659201 -21721320 + L1PA5 LINE L1 5964 6154 0 1294 279 68 32 chr15 79659223 79659724 -21720797 - LTR33 LTR ERVL 0 521 3 217 338 0 0 chr15 79659845 79659913 -21720608 + MIR SINE MIR 195 262 0 2365 98 0 20 chr15 79660062 79660368 -21720153 + AluSq SINE Alu 1 300 -13 1925 130 3 11 chr15 79660368 79660652 -21719869 + AluSx SINE Alu 1 282 -30 189 74 0 0 chr15 79660658 79660685 -21719836 + (TAA)n Simple_repeat Simple_repeat 2 28 0 764 204 0 0 chr15 79660689 79660831 -21719690 + FLAM_C SINE Alu 2 143 0 207 216 20 0 chr15 79661060 79661111 -21719410 + (ATG)n Simple_repeat Simple_repeat 1 52 0 * 231 255 0 0 chr15 79661104 79661155 -21719366 + GA-rich Low_complexity Low_complexity 2 52 0 330 214 18 54 chr15 79661396 79661508 -21719013 - MIR SINE MIR -55 207 100 510 161 0 0 chr15 79661849 79661961 -21718560 + CT-rich Low_complexity Low_complexity 2 113 0 375 246 7 21 chr15 79662646 79662788 -21717733 - MER113 DNA MER1_type? -292 229 90 294 340 31 13 chr15 79663036 79663195 -21717326 + MIR3 SINE MIR 17 178 -30 2106 61 71 4 chr15 79663376 79663656 -21716865 - AluY SINE Alu -12 299 1 294 307 142 0 chr15 79663750 79663926 -21716595 + MLT1J LTR MaLR 2 202 -309 296 247 39 60 chr15 79664038 79664168 -21716353 + MLT1J LTR MaLR 278 450 0 4484 124 87 13 chr15 79664229 79664989 -21715532 - L1MC1 LINE L1 -1 6332 5517 753 155 26 93 chr15 79664989 79665077 -21715444 + MLT1A1 LTR MaLR 1 71 -294 2572 50 0 0 chr15 79665077 79665374 -21715147 + AluY SINE Alu 1 297 -14 753 155 26 93 chr15 79665374 79665478 -21715043 + MLT1A1 LTR MaLR 71 180 -185 774 214 74 28 chr15 79665507 79665723 -21714798 + MLT1A1 LTR MaLR 162 354 -11 241 298 252 0 chr15 79665976 79666107 -21714414 + MIR3 SINE MIR 37 200 -8 253 306 156 33 chr15 79666168 79666443 -21714078 + L2 LINE L2 3000 3308 -5 882 161 93 52 chr15 79667454 79667647 -21712874 + MER20 DNA MER1_type 3 203 -16 1671 166 10 37 chr15 79667907 79668202 -21712319 - AluJo SINE Alu -25 287 1 438 267 17 17 chr15 79668397 79668573 -21711948 + MER104 DNA MER2_type 4 179 -1 206 31 0 31 chr15 79668796 79668828 -21711693 + (TG)n Simple_repeat Simple_repeat 1 31 0 487 314 112 67 chr15 79669206 79669885 -21710636 - L2 LINE L2 -249 3023 2319 2488 57 10 3 chr15 79670069 79670367 -21710154 - AluY SINE Alu -11 300 1 204 226 0 19 chr15 79672665 79672718 -21707803 + CT-rich Low_complexity Low_complexity 4 55 0 237 244 200 0 chr15 79672868 79672958 -21707563 + MIR SINE MIR 30 137 -71 498 302 133 30 chr15 79673001 79673302 -21707219 - MER102b DNA MER1_type -1 340 9 208 309 75 21 chr15 79673708 79673802 -21706719 + L2 LINE L2 3136 3234 -38 2771 173 14 60 chr15 79673867 79674451 -21706070 - MER74A LTR ERVL 0 558 2 2297 105 0 0 chr15 79675443 79675739 -21704782 - AluSg SINE Alu -14 296 1 229 323 20 10 chr15 79676812 79676911 -21703610 - MIR SINE MIR -77 131 32 1847 184 0 0 chr15 79677341 79677640 -21702881 + AluJb SINE Alu 2 300 -12 183 206 219 14 chr15 79678678 79678751 -21701770 + MIR3 SINE MIR 81 168 -40 785 235 16 0 chr15 79679005 79679188 -21701333 - MIR SINE MIR -5 257 72 2512 115 11 11 chr15 79679367 79679731 -21700790 - THE1B LTR MaLR 0 364 1 278 297 20 0 chr15 79679821 79679922 -21700599 + MER103 DNA DNA 63 165 -1 330 318 62 51 chr15 79680067 79680262 -21700259 + L2 LINE L2 3076 3272 0 2884 128 30 13 chr15 79680498 79680968 -21699553 + L1MB2 LINE L1 5426 5903 -268 2237 113 28 50 chr15 79680968 79681389 -21699132 + L1MB3 LINE L1 5770 6183 0 436 318 40 6 chr15 79682669 79682845 -21697676 + Charlie8 DNA MER1_type 3 184 -2233 2198 110 3 17 chr15 79682993 79683293 -21697228 - AluSx SINE Alu -16 296 1 678 188 29 12 chr15 79687235 79687413 -21693108 + MER20 DNA MER1_type 7 219 0 2400 167 71 14 chr15 79687999 79688435 -21692086 + MLT1C LTR MaLR 2 462 -5 994 141 92 35 chr15 79688732 79688959 -21691562 - L1MB8 LINE L1 -200 5978 5739 572 309 93 15 chr15 79689038 79689381 -21691140 - LTR16B LTR ERVL -7 457 88 243 284 35 71 chr15 79689438 79689579 -21690942 - MIR SINE MIR -80 182 47 2435 119 106 10 chr15 79689587 79689983 -21690538 + MER57B LTR ERV1 1 434 0 23 0 0 0 chr15 79690230 79690253 -21690268 + AT_rich Low_complexity Low_complexity 1 23 0 237 320 58 19 chr15 79690624 79690727 -21689794 + L2 LINE L2 3153 3259 -13 521 62 74 25 chr15 79691716 79691797 -21688724 + MER51A LTR ERV1 1 85 -549 2008 176 70 36 chr15 79691797 79692241 -21688280 + LTR2B LTR ERV1 32 490 0 2098 127 120 34 chr15 79692241 79692675 -21687846 + MER51A LTR ERV1 170 634 0 558 224 28 84 chr15 79694007 79694186 -21686335 + MIR SINE MIR 57 225 -37 318 256 35 71 chr15 79695481 79695702 -21684819 + MIR3 SINE MIR 5 215 -47 399 41 0 0 chr15 79695736 79695785 -21684736 + (CAT)n Simple_repeat Simple_repeat 1 49 0 392 151 0 41 chr15 79695841 79695914 -21684607 - MER20 DNA MER1_type 0 219 150 392 151 0 41 chr15 79695923 79695996 -21684525 - MER20 DNA MER1_type 0 219 150 269 330 33 44 chr15 79696365 79696547 -21683974 - L2 LINE L2 -529 2785 2606 189 314 10 10 chr15 79696704 79696806 -21683715 - L2 LINE L2 -815 2499 2398 297 286 100 18 chr15 79697006 79697226 -21683295 - L2 LINE L2 -1262 2052 1815 314 183 43 32 chr15 79697285 79697378 -21683143 - L1MB4 LINE L1 0 6180 6087 7914 18 1 1 chr15 79697478 79699014 -21681507 + L1PA2 LINE L1 4620 6155 0 27 0 0 0 chr15 79699036 79699063 -21681458 + AT_rich Low_complexity Low_complexity 1 27 0 2031 116 4 0 chr15 79699494 79699771 -21680750 + AluSx SINE Alu 1 278 -34 839 49 49 0 chr15 79700513 79700655 -21679866 + (TC)n Simple_repeat Simple_repeat 1 149 0 2611 50 7 0 chr15 79701077 79701380 -21679141 - AluY SINE Alu -6 305 1 360 243 142 90 chr15 79702620 79702986 -21677535 - MLT1H LTR MaLR -70 479 95 752 212 0 54 chr15 79704364 79704548 -21675973 + L1MC4 LINE L1 6460 6633 -1409 1165 234 227 8 chr15 79704560 79705202 -21675319 + L1MC4 LINE L1 6971 7901 -141 27 29 0 0 chr15 79705239 79705273 -21675248 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr15 79705537 79705562 -21674959 + AT_rich Low_complexity Low_complexity 1 25 0 320 267 139 41 chr15 79705596 79705872 -21674649 + L1MEd LINE L1 1016 1420 -1070 23 0 0 0 chr15 79705962 79705985 -21674536 + AT_rich Low_complexity Low_complexity 1 23 0 270 86 0 0 chr15 79706623 79706658 -21673863 - Alu SINE Alu -267 35 1 193 311 211 0 chr15 79706692 79706782 -21673739 + L2 LINE L2 3195 3303 -10 1994 113 0 0 chr15 79706783 79707048 -21673473 + AluSg SINE Alu 39 303 -7 288 287 49 16 chr15 79707496 79707618 -21672903 + L2 LINE L2 3146 3271 -42 799 86 0 16 chr15 79708346 79708474 -21672047 + (TGGA)n Simple_repeat Simple_repeat 2 127 0 3629 102 14 2 chr15 79709175 79709693 -21670828 - L1PA14 LINE L1 -30 6131 5608 575 199 107 8 chr15 79711655 79711786 -21668735 - MER67C LTR ERV1 -62 648 505 810 242 167 0 chr15 79711793 79712074 -21668447 - MER67C LTR ERV1 -379 331 4 643 263 59 11 chr15 79712470 79712656 -21667865 + MIR SINE MIR 31 225 -37 274 321 77 48 chr15 79713482 79713650 -21666871 - MIR3 SINE MIR -19 189 17 1922 104 7 28 chr15 79714288 79714575 -21665946 - Tigger2 DNA MER2_type -1 2717 2437 1490 183 48 103 chr15 79714648 79715123 -21665398 + L1MDa LINE L1 833 1281 -5259 24 53 0 0 chr15 79716034 79716072 -21664449 + AT_rich Low_complexity Low_complexity 1 38 0 519 277 7 7 chr15 79716962 79717103 -21663418 - MIR SINE MIR -31 231 91 1790 163 0 27 chr15 79717118 79717419 -21663102 + AluJo SINE Alu 1 293 -19 1072 164 6 0 chr15 79717419 79717584 -21662937 + AluJb SINE Alu 134 299 -13 22 56 0 0 chr15 79718217 79718253 -21662268 + AT_rich Low_complexity Low_complexity 1 36 0 197 273 0 0 chr15 79718782 79718826 -21661695 + MIR SINE MIR 105 148 -114 315 315 79 0 chr15 79719041 79719168 -21661353 + MIR3 SINE MIR 10 146 -62 1749 160 3 19 chr15 79719491 79719798 -21660723 + AluSx SINE Alu 1 302 -10 267 308 211 8 chr15 79720098 79720231 -21660290 + MIR3 SINE MIR 30 189 -19 236 341 37 12 chr15 79720696 79720778 -21659743 + MIR SINE MIR 22 105 -103 618 225 144 23 chr15 79720969 79721142 -21659379 - MIR SINE MIR -32 230 37 2067 221 35 53 chr15 79721552 79722100 -21658421 + MER34 LTR ERV1 3 540 -2 314 305 63 55 chr15 79722687 79722857 -21657664 - MIR3 SINE MIR 0 208 34 457 138 21 0 chr15 79722912 79723006 -21657515 + GA-rich Low_complexity Low_complexity 3 98 0 882 304 42 41 chr15 79723009 79723482 -21657039 + MER115 DNA AcHobo 152 678 -15 428 278 169 4 chr15 79723841 79724107 -21656414 + L1M4 LINE L1 3693 4002 -2144 779 93 0 0 chr15 79724285 79724382 -21656139 + AluS SINE Alu 2 98 -215 2002 131 7 7 chr15 79724717 79725014 -21655507 - AluSx SINE Alu -13 299 3 246 181 167 28 chr15 79725065 79725137 -21655384 + L1P LINE L1 4159 4240 -1906 452 318 123 62 chr15 79725148 79726015 -21654506 + L1M4 LINE L1 4241 5160 -986 233 333 0 0 chr15 79726027 79726078 -21654443 - L2 LINE L2 -14 3258 3208 636 293 103 52 chr15 79726114 79726483 -21654038 + MLT1J2 LTR MaLR 63 450 0 1877 152 50 42 chr15 79726954 79727315 -21653206 + THE1B LTR MaLR 1 364 0 2273 117 0 3 chr15 79727577 79727876 -21652645 + AluSq SINE Alu 1 298 -15 691 206 85 32 chr15 79728017 79728206 -21652315 + MER105 DNA DNA 2 200 -4 330 26 0 0 chr15 79729250 79729289 -21651232 + (CA)n Simple_repeat Simple_repeat 2 40 0 204 193 24 60 chr15 79730129 79730212 -21650309 + GA-rich Low_complexity Low_complexity 3 82 0 432 0 0 0 chr15 79730714 79730762 -21649759 + (TG)n Simple_repeat Simple_repeat 2 49 0 233 282 26 0 chr15 79731008 79731086 -21649435 + GA-rich Low_complexity Low_complexity 2 81 0 1071 204 112 20 chr15 79731116 79731366 -21649155 + ORSL DNA AcHobo 3 275 0 405 229 63 0 chr15 79732220 79732347 -21648174 + MIR SINE MIR 60 192 -62 384 22 0 0 chr15 79732619 79732664 -21647857 + (CA)n Simple_repeat Simple_repeat 1 45 0 1927 130 58 0 chr15 79733151 79733444 -21647077 - AluSq SINE Alu -3 310 1 388 274 297 0 chr15 79733711 79733886 -21646635 - MIR SINE MIR -24 238 12 222 254 0 0 chr15 79735263 79735318 -21645203 + MIR3 SINE MIR 151 205 -3 432 313 37 0 chr15 79735925 79736059 -21644462 + MIR SINE MIR 50 188 -74 1114 210 64 8 chr15 79736122 79736421 -21644100 - MLT1A1 LTR MaLR -2 363 15 186 200 0 0 chr15 79736620 79736650 -21643871 - MER5A DNA MER1_type 0 189 160 1498 194 82 0 chr15 79736669 79736937 -21643584 + MLT1A1 LTR MaLR 73 362 -3 1393 237 84 19 chr15 79736945 79737316 -21643205 - MLT2B1 LTR ERVL -124 396 2 312 175 75 25 chr15 79737316 79737396 -21643125 + MIR SINE MIR 84 167 -95 1177 184 125 3 chr15 79737545 79738011 -21642510 + MER21A LTR ERV1 5 548 -315 2410 101 64 20 chr15 79738012 79738370 -21642151 + THE1C LTR MaLR 1 374 -1 10150 108 60 16 chr15 79738376 79738782 -21641739 + THE1C-int LTR MaLR 19 406 -1174 2199 128 3 0 chr15 79738782 79739079 -21641442 + AluSx SINE Alu 1 298 -14 10150 108 60 16 chr15 79739079 79740167 -21640354 + THE1C-int LTR MaLR 406 1579 -1 2344 139 13 16 chr15 79740167 79740541 -21639980 + THE1C LTR MaLR 3 375 0 1953 124 3 25 chr15 79740541 79740855 -21639666 + MER21A LTR ERV1 625 931 0 7583 204 143 23 chr15 79741021 79743040 -21637481 + L1M4c LINE L1 423 2786 -3596 1845 149 35 0 chr15 79743040 79743328 -21637193 + AluSx SINE Alu 5 302 -10 7583 204 143 23 chr15 79743328 79743753 -21636768 + L1M4c LINE L1 2786 3159 -3223 831 164 0 0 chr15 79743770 79743898 -21636623 + FLAM_C SINE Alu 1 128 -5 2930 163 57 14 chr15 79743911 79744476 -21636045 + L1MB3 LINE L1 5593 6181 -2 748 292 26 9 chr15 79744555 79744788 -21635733 + MIR SINE MIR 25 261 -1 319 333 153 32 chr15 79744876 79745279 -21635242 + L2 LINE L2 2620 3069 -203 1887 100 52 7 chr15 79745786 79746055 -21634466 - AluSx SINE Alu -6 306 26 1954 100 0 36 chr15 79747211 79747491 -21633030 + AluSx SINE Alu 5 274 -38 986 280 97 22 chr15 79747496 79748025 -21632496 - L2 LINE L2 -77 3236 2671 2375 83 0 0 chr15 79748036 79748338 -21632183 + AluY SINE Alu 1 302 -9 495 252 169 14 chr15 79748342 79748685 -21631836 + L1ME3 LINE L1 2153 2506 -3709 1098 272 73 61 chr15 79748965 79750268 -21630253 + L1ME3 LINE L1 4473 5803 -428 1469 215 79 0 chr15 79750268 79750584 -21629937 - MER58B DNA MER1_type 0 341 1 1098 272 73 61 chr15 79750584 79750757 -21629764 + L1ME3 LINE L1 5803 5972 -259 895 251 132 34 chr15 79750757 79751019 -21629502 - LTR16B LTR ERVL 0 464 144 1494 189 67 0 chr15 79751019 79751304 -21629217 - AluJo SINE Alu -8 304 1 895 251 132 34 chr15 79751304 79751459 -21629062 - LTR16B LTR ERVL -320 144 6 577 170 21 0 chr15 79752427 79752521 -21628000 - AluSg SINE Alu -213 97 2 2628 106 47 3 chr15 79752566 79752925 -21627596 + THE1C LTR MaLR 1 375 0 401 224 65 19 chr15 79753192 79753299 -21627222 - HAL1b LINE L1 -845 503 392 379 346 15 0 chr15 79753299 79753435 -21627086 + C-rich Low_complexity Low_complexity 6 143 0 282 191 11 22 chr15 79753435 79753524 -21626997 + CT-rich Low_complexity Low_complexity 3 90 0 462 283 18 10 chr15 79753680 79753951 -21626570 + MLT1I LTR MaLR 80 407 -2 3917 204 102 12 chr15 79754004 79754933 -21625588 - Charlie1a DNA MER1_type 0 1455 443 327 130 0 72 chr15 79755163 79755232 -21625289 - MLT1F LTR MaLR -20 547 484 * 1639 230 45 20 chr15 79755230 79755587 -21624934 - MLT1F LTR MaLR -176 366 1 1595 245 14 3 chr15 79755593 79755948 -21624573 - Charlie1a DNA MER1_type -1096 359 1 180 0 0 0 chr15 79756194 79756214 -21624307 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2124 74 34 0 chr15 79756216 79756364 -21624157 - AluY SINE Alu -33 278 116 217 0 61 0 chr15 79756364 79756397 -21624124 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2124 74 34 0 chr15 79756397 79756517 -21624004 - AluY SINE Alu -195 116 1 2073 114 6 19 chr15 79756555 79756871 -21623650 - AluSx SINE Alu 0 312 1 1690 159 10 13 chr15 79757281 79757583 -21622938 - L1MB7 LINE L1 -5 6179 5879 1443 129 30 9 chr15 79757690 79757923 -21622598 + AluSg SINE Alu 62 299 -11 26 0 0 0 chr15 79757924 79757950 -21622571 + AT_rich Low_complexity Low_complexity 1 26 0 814 316 41 34 chr15 79758695 79759193 -21621328 + L1ME LINE L1 5328 5818 -303 7645 191 29 15 chr15 79759255 79760502 -21620019 + L1 LINE L1 3472 4746 -1400 663 202 24 40 chr15 79760502 79760626 -21619895 + FLAM_A SINE Alu 1 122 -11 7645 191 29 15 chr15 79760626 79760940 -21619581 + L1 LINE L1 4746 5054 -1092 274 270 321 20 chr15 79760954 79761250 -21619271 + L2 LINE L2 2148 2532 -782 381 302 204 27 chr15 79761365 79761693 -21618828 + L2 LINE L2 2928 3313 0 872 139 28 83 chr15 79761730 79761882 -21618639 - L1MC3 LINE L1 -17 7768 7630 2047 98 45 0 chr15 79761882 79762168 -21618353 - AluY SINE Alu -12 299 1 872 139 28 83 chr15 79762168 79762231 -21618290 - L1MC3 LINE L1 -155 7630 7565 2637 77 9 0 chr15 79762235 79762575 -21617946 + THE1B LTR MaLR 3 345 -19 4491 166 34 7 chr15 79762578 79763254 -21617267 - L1MC3 LINE L1 -223 7562 6858 180 0 0 0 chr15 79763254 79763274 -21617247 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 4491 166 34 7 chr15 79763274 79763433 -21617088 - L1MC3 LINE L1 -927 6858 6705 521 247 131 101 chr15 79763446 79763881 -21616640 + L1ME4a LINE L1 5476 5937 -184 2394 83 0 10 chr15 79763881 79764195 -21616326 - AluY SINE Alu 0 311 1 521 247 131 101 chr15 79764195 79764386 -21616135 + L1ME4a LINE L1 5937 6121 0 326 345 63 75 chr15 79765917 79766279 -21614242 - L2 LINE L2 -5 3267 2910 269 279 155 25 chr15 79766334 79766495 -21614026 - L2 LINE L2 -493 2821 2640 2838 167 41 32 chr15 79767050 79767588 -21612933 + MER67A LTR ERV1 1 543 0 558 225 16 8 chr15 79767770 79767899 -21612622 + MER103 DNA DNA 36 165 -1 1219 138 11 5 chr15 79768257 79768446 -21612075 + AluY SINE Alu 1 190 -121 697 118 0 20 chr15 79768446 79768548 -21611973 + AluY SINE Alu 57 156 -155 674 241 128 85 chr15 79769003 79769322 -21611199 + MLT1J LTR MaLR 16 348 -163 303 119 0 17 chr15 79769349 79769408 -21611113 + L1MA1 LINE L1 6245 6302 0 1587 144 15 26 chr15 79769419 79769683 -21610838 + AluJb SINE Alu 1 261 -51 253 287 269 18 chr15 79770674 79770787 -21609734 - L2 LINE L2 -1 3271 3188 1767 163 10 17 chr15 79770787 79771088 -21609433 + AluJo SINE Alu 2 300 -12 253 287 269 18 chr15 79771088 79771197 -21609324 - L2 LINE L2 -84 3188 2993 309 283 63 31 chr15 79773128 79773319 -21607202 + L2 LINE L2 1527 1723 -1591 2063 189 36 39 chr15 79773321 79773761 -21606760 + MLT1D LTR MaLR 1 439 -66 192 40 0 0 chr15 79773761 79773786 -21606735 + (TTG)n Simple_repeat Simple_repeat 2 26 0 808 71 0 0 chr15 79773789 79773887 -21606634 - AluSg/x SINE Alu -30 280 183 251 206 124 41 chr15 79775113 79775210 -21605311 - L2 LINE L2 0 3272 3168 443 60 15 0 chr15 79775645 79775712 -21604809 + (CA)n Simple_repeat Simple_repeat 2 69 0 1027 185 11 5 chr15 79776758 79776947 -21603574 + MER20 DNA MER1_type 30 219 0 585 129 24 0 chr15 79777522 79777607 -21602914 + AluSg/x SINE Alu 209 295 -15 2438 73 0 3 chr15 79778826 79779128 -21601393 - AluSg SINE Alu -9 301 1 273 345 67 8 chr15 79779388 79779507 -21601014 + L2 LINE L2 3138 3263 -9 1225 291 66 63 chr15 79779600 79780579 -21599942 - L2 LINE L2 -153 3160 2183 252 258 0 0 chr15 79781376 79781438 -21599083 - L1ME LINE L1 -302 5868 5807 880 234 5 32 chr15 79781478 79781666 -21598855 - MER5A DNA MER1_type -5 184 2 1301 252 111 14 chr15 79781673 79782301 -21598220 - L1ME LINE L1 -367 5803 5126 259 279 137 6 chr15 79782301 79782462 -21598059 - MER5C DNA MER1_type -9 315 134 297 360 8 16 chr15 79782854 79782979 -21597542 + L3 LINE CR1 399 522 -1055 238 246 115 0 chr15 79783119 79783180 -21597341 + L2 LINE L2 3137 3204 -68 2009 255 32 23 chr15 79783266 79783823 -21596698 + L1M2 LINE L1 466 1027 -6462 6158 210 52 24 chr15 79783894 79786822 -21593699 + L1M2 LINE L1 1899 4917 -2648 43995 31 21 1 chr15 79786828 79792858 -21587663 + L1PA2 LINE L1 1 6154 -1 10159 148 29 21 chr15 79792843 79793004 -21587517 + L1M2 LINE L1 4891 5049 -2661 * 2168 109 7 0 chr15 79793004 79793297 -21587224 - AluSx SINE Alu -17 295 1 10159 148 29 21 chr15 79793297 79794645 -21585876 + L1M2 LINE L1 5049 6384 -1326 2139 133 0 0 chr15 79794645 79794945 -21585576 + AluSx SINE Alu 1 300 -12 10159 148 29 21 chr15 79794945 79795409 -21585112 + L1M2 LINE L1 6384 6889 -821 1847 108 93 0 chr15 79795409 79795518 -21585003 + AluSx SINE Alu 1 98 -214 183 42 0 0 chr15 79795518 79795542 -21584979 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1847 108 93 0 chr15 79795542 79795710 -21584811 + AluSx SINE Alu 98 304 -8 10159 148 29 21 chr15 79795710 79795859 -21584662 + L1M2 LINE L1 6889 7035 -675 507 231 52 71 chr15 79795854 79796066 -21584455 - L1MEc LINE L1 -3712 2503 2296 * 684 115 0 0 chr15 79796088 79796192 -21584329 + (TA)n Simple_repeat Simple_repeat 1 104 0 1708 170 40 0 chr15 79796198 79796474 -21584047 - AluJo SINE Alu -25 287 1 319 301 75 62 chr15 79796497 79796819 -21583702 - L1MEc LINE L1 -4094 2302 1977 189 388 61 18 chr15 79797175 79797340 -21583181 - L2 LINE L2 -861 2453 2282 * 194 357 158 11 chr15 79797339 79797611 -21582910 - L3 LINE CR1 -6 1571 1260 227 333 87 8 chr15 79798014 79798140 -21582381 - MIR SINE MIR -90 172 37 1833 189 61 59 chr15 79798300 79798775 -21581746 + MLT1D LTR MaLR 1 476 -29 539 330 94 55 chr15 79798863 79799386 -21581135 + L2 LINE L2 2205 2761 -553 1433 171 111 7 chr15 79799386 79799504 -21581017 + AluJo SINE Alu 1 105 -207 198 0 0 0 chr15 79799504 79799526 -21580995 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1433 171 111 7 chr15 79799526 79799687 -21580834 + AluJo SINE Alu 105 309 -3 539 330 94 55 chr15 79799687 79799832 -21580689 + L2 LINE L2 2761 2899 -415 248 283 63 33 chr15 79799933 79800029 -21580492 - MIR SINE MIR -63 145 51 2191 125 3 0 chr15 79800136 79800441 -21580080 + AluSx SINE Alu 6 311 -1 433 230 97 78 chr15 79802252 79802509 -21578012 + HAL1 LINE L1 1206 1467 -1040 320 174 4 0 chr15 79802509 79802576 -21577945 + Alu SINE Alu 1 47 -255 449 305 24 18 chr15 79802896 79803063 -21577458 + MIR SINE MIR 16 183 -79 357 215 101 0 chr15 79804324 79804403 -21576118 + MLT1J LTR MaLR 13 99 -412 805 221 58 12 chr15 79804414 79804586 -21575935 - MER58A DNA MER1_type -8 216 37 1194 244 62 35 chr15 79804593 79804995 -21575526 + MLT1J LTR MaLR 99 511 0 227 329 12 12 chr15 79805274 79805356 -21575165 + MARNA DNA Mariner 330 411 -175 285 29 0 0 chr15 79807353 79807387 -21573134 + (TG)n Simple_repeat Simple_repeat 2 35 0 922 73 0 0 chr15 79807578 79807688 -21572833 - AluSc SINE Alu -199 110 1 195 129 0 0 chr15 79807716 79807747 -21572774 + (A)n Simple_repeat Simple_repeat 1 31 0 266 264 192 8 chr15 79807846 79807971 -21572550 + HAL1 LINE L1 1743 1890 -617 410 270 78 0 chr15 79808008 79808123 -21572398 - L2 LINE L2 -10 3303 3180 224 200 100 0 chr15 79808823 79808873 -21571648 + L2 LINE L2 3153 3207 -65 2150 111 0 0 chr15 79809050 79809361 -21571160 - AluSg SINE Alu 0 311 1 318 250 48 0 chr15 79809890 79809974 -21570547 - MLT1J1 LTR MaLR -358 88 1 360 337 17 17 chr15 79810268 79810443 -21570078 - MIR SINE MIR -6 256 82 202 278 241 28 chr15 79810565 79810673 -21569848 - MIR3 SINE MIR -43 165 35 803 226 167 36 chr15 79810816 79811205 -21569316 - MLT1J1 LTR MaLR -6 440 1 231 190 17 17 chr15 79812338 79812396 -21568125 - MLT1A1-int LTR MaLR -1309 62 5 1908 138 7 7 chr15 79812545 79812857 -21567664 - AluSx SINE Alu 0 312 1 522 309 0 7 chr15 79813212 79813348 -21567173 - L2 LINE L2 0 3272 3138 2398 70 0 3 chr15 79814038 79814336 -21566185 + AluY SINE Alu 1 297 -14 198 0 0 0 chr15 79814925 79814947 -21565574 + (CCCCAG)n Simple_repeat Simple_repeat 4 25 0 382 256 138 69 chr15 79815174 79815260 -21565261 - MIR SINE MIR -6 256 177 2464 88 3 0 chr15 79815260 79815566 -21564955 + AluSx SINE Alu 1 307 -5 382 256 138 69 chr15 79815566 79815682 -21564839 - MIR SINE MIR -85 177 40 2224 129 0 3 chr15 79815702 79816011 -21564510 + AluSx SINE Alu 1 308 -4 685 75 0 19 chr15 79816011 79816118 -21564403 + (GGAA)n Simple_repeat Simple_repeat 1 105 0 1116 16 22 43 chr15 79816118 79816302 -21564219 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2805 10 0 0 chr15 79816952 79817250 -21563271 - AluY SINE Alu -13 298 1 189 244 0 0 chr15 79817317 79817358 -21563163 + MIR SINE MIR 87 127 -135 186 324 69 29 chr15 79817705 79817807 -21562714 - L2 LINE L2 -4 3268 3163 804 264 32 0 chr15 79817838 79818058 -21562463 + LTR33 LTR ERVL 7 233 -288 2084 102 7 27 chr15 79818161 79818456 -21562065 - AluSx SINE Alu -23 289 1 1409 180 63 68 chr15 79818474 79818841 -21561680 - MLT1A1 LTR MaLR 0 365 1 592 188 235 7 chr15 79820071 79820220 -21560301 - MER20 DNA MER1_type -28 191 9 217 158 0 0 chr15 79820855 79820893 -21559628 + MIR SINE MIR 196 233 -29 311 216 128 29 chr15 79821857 79821959 -21558562 + MIR SINE MIR 95 206 -56 341 305 116 42 chr15 79822696 79822886 -21557635 + MIR SINE MIR 58 261 -1 2262 98 16 10 chr15 79823121 79823426 -21557095 - AluSq SINE Alu -6 307 1 342 0 0 0 chr15 79823447 79823485 -21557036 + (TG)n Simple_repeat Simple_repeat 2 39 0 446 237 52 37 chr15 79823963 79824098 -21556423 - MER5A DNA MER1_type -52 137 1 2089 119 0 3 chr15 79825987 79826307 -21554214 - AluSq SINE Alu 0 319 1 4199 293 87 44 chr15 79826922 79827847 -21552674 + HERV16 LTR ERVL 1167 2051 -2945 2568 173 27 58 chr15 79827847 79828368 -21552153 - MLT1D LTR MaLR 0 505 1 4199 293 87 44 chr15 79828368 79830167 -21550354 + HERV16 LTR ERVL 2051 3775 -1221 412 272 15 37 chr15 79830181 79830317 -21550204 - HERV16 LTR ERVL -2158 2838 2706 2407 90 3 3 chr15 79830317 79830618 -21549903 - AluSp SINE Alu -12 301 1 427 373 5 5 chr15 79830700 79830904 -21549617 + HERV16 LTR ERVL 4135 4338 -1147 363 266 104 29 chr15 79831270 79831443 -21549078 + MLT1J LTR MaLR 231 416 -95 228 140 140 0 chr15 79831771 79831821 -21548700 + MLT1J LTR MaLR 411 467 0 25 31 0 0 chr15 79832889 79832921 -21547600 + AT_rich Low_complexity Low_complexity 1 32 0 214 364 68 0 chr15 79833695 79833813 -21546708 + L3 LINE CR1 1161 1286 -291 276 262 12 60 chr15 79833979 79834063 -21546458 + L3 LINE CR1 1491 1570 -7 479 139 13 0 chr15 79834676 79834755 -21545766 - MER116 DNA Mariner 0 80 1 192 138 0 0 chr15 79835053 79835082 -21545439 - MIR3 SINE MIR -27 181 153 266 191 0 0 chr15 79835085 79835132 -21545389 + MER5B DNA MER1_type 4 50 -128 548 154 8 68 chr15 79835211 79835227 -21545294 - L1MC1 LINE L1 0 6333 6318 2020 76 76 56 chr15 79835227 79835530 -21544991 - AluY SINE Alu -2 309 1 548 154 8 68 chr15 79835530 79835630 -21544891 - L1MC1 LINE L1 -15 6318 6224 2204 79 14 24 chr15 79835920 79836251 -21544270 - AluY SINE Alu 0 311 1 351 328 17 8 chr15 79836441 79836560 -21543961 + MER5A DNA MER1_type 51 170 -19 215 326 0 43 chr15 79836596 79836688 -21543833 - MIR SINE MIR -110 152 65 294 147 0 160 chr15 79837123 79837198 -21543323 + MIR SINE MIR 119 181 -81 704 154 8 8 chr15 79837524 79837647 -21542874 - MIR SINE MIR -79 183 61 1544 207 60 88 chr15 79837721 79837788 -21542733 - MLT1F1 LTR MaLR 0 567 500 2385 85 0 0 chr15 79837788 79838109 -21542412 + AluY SINE Alu 1 321 0 1544 207 60 88 chr15 79838109 79838619 -21541902 - MLT1F1 LTR MaLR -67 500 3 234 280 60 0 chr15 79838702 79838802 -21541719 - L1MC/D LINE L1 -1971 5837 5732 284 321 84 46 chr15 79838818 79838949 -21541572 - L2 LINE L2 -1 3271 3136 21 0 0 0 chr15 79839251 79839272 -21541249 + AT_rich Low_complexity Low_complexity 1 21 0 1408 148 5 5 chr15 79839480 79839690 -21540831 - AluJb SINE Alu -102 210 1 250 248 55 0 chr15 79839701 79839810 -21540711 - L1ME4a LINE L1 -187 5934 5820 1090 135 119 10 chr15 79839810 79840003 -21540518 - AluJb SINE Alu -13 299 86 422 255 72 83 chr15 79840011 79840217 -21540304 - L1ME4a LINE L1 -303 5818 5611 2253 107 3 19 chr15 79840217 79840527 -21539994 - AluSg SINE Alu -5 305 1 422 255 72 83 chr15 79840527 79840812 -21539709 - L1ME4a LINE L1 -510 5611 5305 435 272 148 30 chr15 79841027 79841229 -21539292 + MIR SINE MIR 16 241 -21 198 103 0 0 chr15 79841746 79841775 -21538746 + (TCCC)n Simple_repeat Simple_repeat 2 30 0 351 269 58 44 chr15 79841819 79841978 -21538543 + MIR3 SINE MIR 36 206 -2 2242 66 0 11 chr15 79842018 79842289 -21538232 - AluY SINE Alu -15 296 29 1785 62 0 0 chr15 79844048 79844256 -21536265 - AluY SINE Alu -102 209 2 338 45 0 0 chr15 79844445 79844489 -21536032 - AluY SINE Alu -10 291 248 697 294 59 5 chr15 79844961 79845182 -21535339 - MIR SINE MIR -20 242 10 287 343 0 0 chr15 79845222 79845321 -21535200 - MIR SINE MIR -71 137 39 2262 86 0 0 chr15 79845380 79845658 -21534863 + AluSc SINE Alu 24 301 -8 1011 183 50 0 chr15 79846160 79846362 -21534159 + MER20 DNA MER1_type 1 212 -7 1821 104 20 118 chr15 79846554 79846901 -21533620 - AluYb8 SINE Alu -5 313 1 668 187 181 13 chr15 79847002 79847157 -21533364 - MER5A DNA MER1_type -2 187 7 2010 138 3 0 chr15 79847392 79847715 -21532806 - AluSx SINE Alu 0 324 1 511 185 9 9 chr15 79847752 79847860 -21532661 - LTR33 LTR ERVL -32 489 382 458 232 106 7 chr15 79849548 79849690 -21530831 + L2 LINE L2 3116 3271 -1 182 114 0 29 chr15 79849701 79849736 -21530785 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 895 265 32 72 chr15 79850086 79850460 -21530061 + MER115 DNA AcHobo 285 643 -50 216 309 0 0 chr15 79850468 79850534 -21529987 + (TG)n Simple_repeat Simple_repeat 1 66 0 200 314 0 0 chr15 79850642 79850712 -21529809 + MIR SINE MIR 123 192 -70 419 0 20 0 chr15 79850832 79850883 -21529638 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 2015 143 0 4 chr15 79850884 79851164 -21529357 - AluJo SINE Alu -33 279 1 2275 88 30 0 chr15 79851296 79851591 -21528930 - AluSc SINE Alu -5 304 1 458 363 44 58 chr15 79851621 79852029 -21528492 - L1M4 LINE L1 -1036 5110 4707 1712 156 22 59 chr15 79852029 79852350 -21528171 - AluJo SINE Alu -3 309 1 458 363 44 58 chr15 79852350 79852373 -21528148 - L1M4 LINE L1 -1439 4707 4685 499 238 46 20 chr15 79852426 79852577 -21527944 - MIR SINE MIR -95 167 13 329 255 91 105 chr15 79852674 79852960 -21527561 - L1M4 LINE L1 -5227 1315 1034 325 216 68 0 chr15 79853404 79853478 -21527043 - MIR SINE MIR -98 164 86 246 32 0 0 chr15 79853580 79853611 -21526910 + (TG)n Simple_repeat Simple_repeat 1 31 0 195 42 0 0 chr15 79853610 79853634 -21526887 + (CG)n Simple_repeat Simple_repeat 2 25 0 * 285 332 221 15 chr15 79853770 79853969 -21526552 + MIR SINE MIR 20 259 -3 2533 36 7 26 chr15 79854020 79854327 -21526194 + AluY SINE Alu 1 301 -10 252 315 75 14 chr15 79854695 79854841 -21525680 + MIR3 SINE MIR 49 203 -5 429 254 148 59 chr15 79855266 79855353 -21525168 - L1ME4a LINE L1 -17 6104 6026 2218 103 3 10 chr15 79855353 79855653 -21524868 + AluSx SINE Alu 1 298 -14 429 254 148 59 chr15 79855653 79855821 -21524700 - L1ME4a LINE L1 -95 6026 5826 211 154 0 96 chr15 79856018 79856070 -21524451 + MIR SINE MIR 51 97 -165 544 173 10 202 chr15 79856078 79856286 -21524235 - MER69 DNA AcHobo -8 2518 2 422 219 36 66 chr15 79856296 79856433 -21524088 + MIR SINE MIR 115 247 -15 314 203 17 0 chr15 79856565 79856624 -21523897 - L2 LINE L2 0 3272 3213 290 214 26 86 chr15 79858761 79858878 -21521643 - MIR SINE MIR -42 220 111 34 42 0 0 chr15 79859408 79859456 -21521065 + GC_rich Low_complexity Low_complexity 1 48 0 23 0 0 0 chr15 79859786 79859809 -21520712 + GC_rich Low_complexity Low_complexity 1 23 0 231 208 65 0 chr15 79860317 79860394 -21520127 + G-rich Low_complexity Low_complexity 3 84 0 256 265 0 24 chr15 79860569 79860652 -21519869 + GA-rich Low_complexity Low_complexity 3 83 0 23 0 0 0 chr15 79860967 79860990 -21519531 + GC_rich Low_complexity Low_complexity 1 23 0 234 91 0 0 chr15 79861036 79861069 -21519452 + (CGG)n Simple_repeat Simple_repeat 1 33 0 234 191 0 0 chr15 79863013 79863060 -21517461 + CT-rich Low_complexity Low_complexity 1 47 0 180 184 0 0 chr15 79863312 79863361 -21517160 + CT-rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr15 79863719 79863741 -21516780 + AT_rich Low_complexity Low_complexity 1 22 0 534 139 93 31 chr15 79865138 79865267 -21515254 - ORSL DNA AcHobo -1 274 138 21 71 0 0 chr15 79865309 79865351 -21515170 + AT_rich Low_complexity Low_complexity 1 42 0 819 173 62 6 chr15 79866923 79867085 -21513436 + MER20 DNA MER1_type 16 186 -33 2370 57 0 0 chr15 79867748 79868045 -21512476 + AluY SINE Alu 1 297 -14 518 282 51 13 chr15 79868474 79868630 -21511891 - MIR SINE MIR -88 174 13 297 325 43 62 chr15 79869272 79869481 -21511040 + MIR SINE MIR 38 242 -20 676 238 9 116 chr15 79870107 79870174 -21510347 - L1MC4 LINE L1 -6 8036 7963 1961 138 0 3 chr15 79870174 79870478 -21510043 - AluSx SINE Alu -9 303 1 676 238 9 116 chr15 79870478 79870746 -21509775 - L1MC4 LINE L1 -79 7963 7737 2219 82 26 0 chr15 79871216 79871521 -21509000 + AluSq SINE Alu 1 313 0 491 314 46 10 chr15 79871553 79871747 -21508774 + MIR SINE MIR 10 210 -52 222 248 130 150 chr15 79871817 79872124 -21508397 - L2 LINE L2 -147 3125 2825 290 244 104 47 chr15 79872711 79872874 -21507647 - MER5A DNA MER1_type -5 184 2 610 50 0 0 chr15 79873025 79873105 -21507416 + L1PA2 LINE L1 6074 6153 -2 270 0 0 0 chr15 79873887 79873917 -21506604 + (CA)n Simple_repeat Simple_repeat 2 31 0 1107 251 150 20 chr15 79874530 79874733 -21505788 + MLT1K LTR MaLR 194 369 -219 2079 123 0 10 chr15 79874733 79875042 -21505479 + AluSx SINE Alu 1 306 -6 1107 251 150 20 chr15 79875042 79875184 -21505337 + MLT1K LTR MaLR 369 584 -4 1709 270 75 42 chr15 79875350 79875452 -21505069 - MER115 DNA AcHobo 0 693 596 2126 106 0 20 chr15 79875452 79875755 -21504766 - AluSx SINE Alu -15 297 1 1709 270 75 42 chr15 79875755 79876322 -21504199 - MER115 DNA AcHobo -97 596 2 237 143 0 0 chr15 79876332 79876367 -21504154 + MER57B LTR ERV1 1 35 -399 237 91 0 0 chr15 79876373 79876406 -21504115 - MER57B LTR ERV1 -372 62 30 1782 47 98 20 chr15 79877355 79877610 -21502911 - AluY SINE Alu -3 308 34 2032 115 3 0 chr15 79877835 79878130 -21502391 - AluSq SINE Alu -17 296 1 2257 104 0 0 chr15 79878744 79879052 -21501469 - AluSg SINE Alu -2 308 1 297 0 0 0 chr15 79879266 79879299 -21501222 + (TG)n Simple_repeat Simple_repeat 2 34 0 425 271 80 13 chr15 79879299 79879439 -21501082 + L2 LINE L2 3160 3312 -1 2193 107 0 0 chr15 79879538 79879846 -21500675 + AluSq SINE Alu 1 308 -5 293 341 48 24 chr15 79879912 79880079 -21500442 + MER5A DNA MER1_type 1 182 -7 407 318 183 29 chr15 79880161 79880510 -21500011 - L1MC/D LINE L1 -2144 5664 5262 583 264 40 47 chr15 79880706 79881002 -21499519 - L2 LINE L2 -1035 2279 1986 996 168 0 54 chr15 79881105 79881308 -21499213 + AluJb SINE Alu 100 291 -21 1477 146 13 4 chr15 79881593 79881832 -21498689 - AluJb SINE Alu -13 299 59 763 192 16 0 chr15 79881850 79881971 -21498550 - MER1B DNA MER1_type -77 220 138 5615 163 78 19 chr15 79881971 79883004 -21497517 - MER52A LTR ERV1 0 1755 662 1103 187 96 30 chr15 79882996 79883226 -21497295 - MER52A LTR ERV1 -1510 245 1 * 458 182 148 0 chr15 79883226 79883312 -21497209 - MER1B DNA MER1_type -236 101 3 891 109 7 15 chr15 79883918 79884055 -21496466 + FRAM SINE Alu 22 157 -19 29 0 0 0 chr15 79884055 79884084 -21496437 + AT_rich Low_complexity Low_complexity 1 29 0 1383 218 78 16 chr15 79884273 79884594 -21495927 - MER58B DNA MER1_type 0 341 1 1711 155 55 0 chr15 79884639 79884930 -21495591 - AluJb SINE Alu -5 307 1 21 0 0 0 chr15 79884940 79884961 -21495560 + AT_rich Low_complexity Low_complexity 1 21 0 283 313 44 52 chr15 79885749 79885998 -21494523 - L1ME LINE L1 -241 5880 5634 2447 261 44 8 chr15 79886016 79886632 -21493889 + MER115 DNA AcHobo 56 693 0 243 318 121 35 chr15 79886636 79886834 -21493687 - L1ME LINE L1 -502 5619 5405 614 271 19 45 chr15 79886842 79887108 -21493413 - MIR SINE MIR 0 262 4 866 184 0 0 chr15 79887175 79887333 -21493188 - L1MD3 LINE L1 -8 7987 7830 2141 103 3 0 chr15 79887335 79887636 -21492885 + AluSg SINE Alu 3 304 -6 1100 114 6 6 chr15 79888213 79888379 -21492142 + AluSg SINE Alu 1 166 -144 390 280 42 28 chr15 79888479 79888622 -21491899 + MIR SINE MIR 118 262 0 2115 119 0 7 chr15 79889682 79889984 -21490537 - AluSg SINE Alu -10 300 1 259 288 144 15 chr15 79890280 79890412 -21490109 + MIR SINE MIR 43 191 -71 261 57 0 0 chr15 79890625 79890660 -21489861 + (GA)n Simple_repeat Simple_repeat 2 36 0 2614 192 76 111 chr15 79890661 79890910 -21489611 + L1MC3 LINE L1 6872 7128 -657 313 301 0 0 chr15 79890910 79890993 -21489528 + MLT1F1 LTR MaLR 35 117 -450 2614 192 76 111 chr15 79890993 79891608 -21488913 + L1MC3 LINE L1 7128 7785 0 1941 130 27 0 chr15 79892681 79892982 -21487539 + AluSx SINE Alu 1 309 -3 190 0 67 0 chr15 79893260 79893290 -21487231 + (TG)n Simple_repeat Simple_repeat 2 33 0 1970 117 7 13 chr15 79894513 79894820 -21485701 + AluSx SINE Alu 1 305 -7 309 26 0 0 chr15 79894836 79894874 -21485647 + (TG)n Simple_repeat Simple_repeat 1 38 0 939 90 119 0 chr15 79896073 79896207 -21484314 + AluSq/x SINE Alu 1 150 -163 704 274 61 34 chr15 79896367 79896663 -21483858 - L1ME LINE L1 -315 5806 5503 311 356 17 8 chr15 79896712 79896830 -21483691 + L1MC/D LINE L1 5593 5711 -2097 2359 57 0 31 chr15 79897158 79897475 -21483046 - AluY SINE Alu -4 307 1 329 295 21 11 chr15 79898748 79898843 -21481678 - MIR SINE MIR -77 131 36 544 244 55 8 chr15 79898932 79899059 -21481462 + MER69A DNA AcHobo 2 134 -43 1863 164 42 30 chr15 79899586 79899653 -21480868 - MLT1A1 LTR MaLR 0 365 300 2271 84 0 3 chr15 79899653 79899952 -21480569 - AluY SINE Alu -13 298 1 1863 164 42 30 chr15 79899952 79900219 -21480302 - MLT1A1 LTR MaLR -65 300 27 2915 191 50 20 chr15 79900360 79901038 -21479483 + Tigger7 DNA MER2_type 2 2587 0 467 271 0 0 chr15 79902387 79902509 -21478012 - L1MC4 LINE L1 0 8042 7921 227 211 26 51 chr15 79902532 79902688 -21477833 + (TTATA)n Simple_repeat Simple_repeat 1 152 0 379 234 48 8 chr15 79902822 79902946 -21477575 - L1MC4 LINE L1 -212 7830 7702 1474 123 5 0 chr15 79902946 79903166 -21477355 - AluSp SINE Alu -1 312 92 1540 148 2 161 chr15 79903332 79903710 -21476811 + MER7A DNA MER2_type 2 438 -2600 228 35 0 0 chr15 79903710 79903739 -21476782 + (TTTAA)n Simple_repeat Simple_repeat 3 31 0 2248 68 0 0 chr15 79903741 79904022 -21476499 - AluY SINE Alu -30 281 1 1540 148 2 161 chr15 79904022 79904051 -21476470 + MER7A DNA MER2_type 313 345 -1 1023 157 0 12 chr15 79904221 79904387 -21476134 - FAM SINE Alu -11 164 1 309 263 180 25 chr15 79904456 79904734 -21475787 - L1MC4a LINE L1 -1914 5894 5574 592 236 75 35 chr15 79905513 79905712 -21474809 + MLT1J LTR MaLR 305 511 0 376 234 113 24 chr15 79905717 79905841 -21474680 + MIR SINE MIR 70 204 -58 828 184 29 17 chr15 79905848 79906022 -21474499 + MER5B DNA MER1_type 1 176 -2 995 198 16 0 chr15 79907679 79907861 -21472660 - MER5A DNA MER1_type 0 189 5 270 286 31 20 chr15 79907920 79908018 -21472503 + MIR SINE MIR 20 118 -90 183 296 0 0 chr15 79908284 79908328 -21472193 - L2 LINE L2 -556 2758 2715 1200 264 129 67 chr15 79908336 79908622 -21471899 - MLT1K LTR MaLR 0 588 321 2162 119 0 0 chr15 79908622 79908934 -21471587 + AluSx SINE Alu 1 312 0 1200 264 129 67 chr15 79908934 79909158 -21471363 - MLT1K LTR MaLR -267 321 46 438 287 127 21 chr15 79910780 79911017 -21469504 - MIR SINE MIR 0 262 1 1855 149 0 0 chr15 79911914 79912222 -21468299 + AluJb SINE Alu 1 308 0 243 0 0 0 chr15 79912315 79912342 -21468179 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 930 110 0 8 chr15 79912981 79913108 -21467413 + AluSg/x SINE Alu 72 197 -113 1939 140 17 0 chr15 79915560 79915684 -21464837 + AluSx SINE Alu 1 121 -191 198 0 0 0 chr15 79915684 79915706 -21464815 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1939 140 17 0 chr15 79915706 79915874 -21464647 + AluSx SINE Alu 121 298 -14 23 33 0 0 chr15 79915990 79916020 -21464501 + AT_rich Low_complexity Low_complexity 1 30 0 1063 155 11 11 chr15 79916141 79916315 -21464206 - AluJo SINE Alu -19 293 120 342 156 18 119 chr15 79916318 79916392 -21464129 + L1MB5 LINE L1 6069 6130 -44 2077 89 0 4 chr15 79916392 79916651 -21463870 + AluSp SINE Alu 41 298 -15 342 156 18 119 chr15 79916651 79916685 -21463836 + L1MB5 LINE L1 6130 6166 -8 351 276 51 45 chr15 79916699 79916855 -21463666 + HAL1 LINE L1 1116 1272 -1235 226 241 93 28 chr15 79917093 79917201 -21463320 + HAL1 LINE L1 1450 1564 -943 612 205 92 0 chr15 79917892 79918034 -21462487 + L1MD2 LINE L1 6004 6088 -154 207 318 0 0 chr15 79918166 79918232 -21462289 + MIR SINE MIR 166 231 -31 243 204 19 0 chr15 79918348 79918402 -21462119 + L1MD2 LINE L1 6162 6216 -143 21 36 0 0 chr15 79919155 79919183 -21461338 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr15 79919848 79919869 -21460652 + AT_rich Low_complexity Low_complexity 1 21 0 786 296 165 27 chr15 79920804 79921210 -21459311 - L3 LINE CR1 -97 1480 1019 1990 131 6 31 chr15 79921334 79921654 -21458867 + AluSx SINE Alu 1 312 0 1460 193 57 0 chr15 79922171 79922435 -21458086 + AluJo SINE Alu 1 279 -33 302 338 188 12 chr15 79923459 79923799 -21456722 + L3 LINE CR1 352 751 -826 598 200 56 8 chr15 79923818 79923943 -21456578 - FLAM_A SINE Alu -2 131 1 1174 138 51 18 chr15 79924006 79924223 -21456298 + AluJb SINE Alu 77 300 -12 257 349 40 0 chr15 79924224 79924350 -21456171 + L3 LINE CR1 872 1002 -575 236 132 94 19 chr15 79924551 79924604 -21455917 + L2 LINE L2 3212 3268 -4 2175 119 3 0 chr15 79924663 79924965 -21455556 + AluSc SINE Alu 1 303 -6 2341 93 3 0 chr15 79924971 79925271 -21455250 + AluSp SINE Alu 1 301 -12 238 119 68 17 chr15 79925365 79925424 -21455097 + L1MA1 LINE L1 6241 6302 0 31 0 0 0 chr15 79925424 79925455 -21455066 + AT_rich Low_complexity Low_complexity 1 31 0 2289 87 0 13 chr15 79925499 79925808 -21454713 + AluSq SINE Alu 1 305 -8 1781 142 46 40 chr15 79927297 79927600 -21452921 + AluSx SINE Alu 1 305 -7 583 191 17 0 chr15 79927928 79928043 -21452478 - MER46A DNA MER2_type -2 234 118 2196 124 0 3 chr15 79928046 79928345 -21452176 + AluSg SINE Alu 1 298 -12 325 175 0 0 chr15 79928345 79928402 -21452119 - MER46A DNA MER2_type -178 58 2 305 376 139 19 chr15 79928632 79929007 -21451514 + L3 LINE CR1 35 454 -1123 528 336 164 27 chr15 79929401 79929851 -21450670 + L3 LINE CR1 976 1487 -90 348 239 90 60 chr15 79930409 79930576 -21449945 - MIR SINE MIR -27 235 64 1894 152 0 10 chr15 79931052 79931341 -21449180 + AluJb SINE Alu 2 287 -25 560 159 333 0 chr15 79932885 79933023 -21447498 + MER3 DNA MER1_type 1 184 -25 * 580 213 123 0 chr15 79933007 79933129 -21447392 + MER3 DNA MER1_type 73 209 0 668 264 174 0 chr15 79933417 79933618 -21446903 - MIR SINE MIR -25 237 2 254 289 0 0 chr15 79934311 79934363 -21446158 - Tigger8 DNA MER2_type -4 662 611 279 235 26 52 chr15 79934455 79934570 -21445951 - L1ME3A LINE L1 -15 6155 6044 561 337 40 15 chr15 79934690 79935016 -21445505 + L2 LINE L2 2422 2755 -559 513 328 121 41 chr15 79935072 79935582 -21444939 + L2 LINE L2 2736 3271 -1 1200 116 23 0 chr15 79937232 79937404 -21443117 - AluSq SINE Alu -133 180 5 1556 223 162 37 chr15 79937557 79938229 -21442292 - HAL1 LINE L1 -604 1903 1148 583 270 23 11 chr15 79938357 79938531 -21441990 - MIR SINE MIR -10 252 77 219 353 71 0 chr15 79938546 79938631 -21441890 - MIR SINE MIR -164 98 8 262 271 84 9 chr15 79938633 79938740 -21441781 + MER117 DNA MER1_type 5 119 -78 1773 154 45 0 chr15 79939706 79939998 -21440523 + AluJo SINE Alu 3 307 -5 429 238 50 0 chr15 79941107 79941208 -21439313 + MER103 DNA DNA 11 116 -50 311 318 121 47 chr15 79941699 79942039 -21438482 - L2 LINE L2 -1199 2115 1751 2050 149 0 3 chr15 79942682 79942977 -21437544 + AluSx SINE Alu 1 294 -18 2198 120 0 13 chr15 79943046 79943362 -21437159 + AluSx SINE Alu 1 312 0 345 314 107 32 chr15 79944358 79944397 -21436124 + L3 LINE CR1 814 849 -728 1939 149 3 7 chr15 79944397 79944692 -21435829 + AluSg SINE Alu 1 294 -16 345 314 107 32 chr15 79944692 79944904 -21435617 + L3 LINE CR1 849 1084 -493 2525 47 0 7 chr15 79944961 79945259 -21435262 + AluY SINE Alu 1 296 -15 1558 210 88 0 chr15 79946498 79946657 -21433864 + L1MD2 LINE L1 5961 6105 -254 315 0 0 0 chr15 79946657 79946692 -21433829 + (CA)n Simple_repeat Simple_repeat 2 36 0 1558 210 88 0 chr15 79946692 79946885 -21433636 + L1MD2 LINE L1 6105 6344 -15 219 69 0 0 chr15 79947713 79947742 -21432779 + (CA)n Simple_repeat Simple_repeat 2 30 0 239 327 9 64 chr15 79947799 79947909 -21432612 + L3 LINE CR1 1469 1572 -5 1535 170 4 8 chr15 79948327 79948586 -21431935 + AluJb SINE Alu 1 258 -54 234 81 0 0 chr15 79948958 79948995 -21431526 + (T)n Simple_repeat Simple_repeat 1 37 0 250 229 0 0 chr15 79949050 79949098 -21431423 - L2 LINE L2 -1 3312 3265 241 328 109 8 chr15 79949782 79949901 -21430620 + MIR3 SINE MIR 15 145 -63 1644 117 0 17 chr15 79950052 79950291 -21430230 + AluSq SINE Alu 1 235 -78 2407 97 0 0 chr15 79950919 79951219 -21429302 - AluSx SINE Alu -12 300 1 231 188 0 0 chr15 79952596 79952644 -21427877 + GA-rich Low_complexity Low_complexity 1 48 0 361 247 29 86 chr15 79953299 79953473 -21427048 + MLT1L LTR MaLR 16 179 -436 228 35 0 0 chr15 79953581 79953610 -21426911 + (CA)n Simple_repeat Simple_repeat 2 30 0 1669 249 69 10 chr15 79953611 79954217 -21426304 + L1ME3A LINE L1 5122 5763 -399 247 226 0 0 chr15 79954223 79954276 -21426245 + L1ME3A LINE L1 6028 6080 -90 623 288 64 26 chr15 79954733 79954966 -21425555 - MIR SINE MIR 0 262 21 490 315 14 0 chr15 79955010 79955153 -21425368 + MIR3 SINE MIR 35 179 -29 204 323 0 0 chr15 79956744 79956806 -21423715 + L2 LINE L2 3252 3313 0 185 0 0 39 chr15 79958476 79958487 -21422034 + (TAA)n Simple_repeat Simple_repeat 2 12 -14 1992 96 3 40 chr15 79958487 79958788 -21421733 + AluSx SINE Alu 1 290 -22 185 0 0 39 chr15 79958788 79958802 -21421719 + (TAA)n Simple_repeat Simple_repeat 12 26 0 318 326 33 39 chr15 79958946 79959127 -21421394 + L2 LINE L2 1729 1908 -1406 2076 105 0 24 chr15 79959201 79959524 -21420997 - AluSx SINE Alu 0 312 1 238 293 111 0 chr15 79959636 79959735 -21420786 + L2 LINE L2 2028 2137 -1177 231 136 91 0 chr15 79959735 79959779 -21420742 + MER66A LTR ERV1 1 48 -430 288 309 94 35 chr15 79959820 79960021 -21420500 + L2 LINE L2 2811 3023 -249 1722 169 80 69 chr15 79960025 79960309 -21420212 - MLT1C LTR MaLR 0 467 175 2538 46 3 7 chr15 79960309 79960613 -21419908 - AluY SINE Alu -8 303 1 1722 169 80 69 chr15 79960613 79960790 -21419731 - MLT1C LTR MaLR -292 175 1 3602 128 45 67 chr15 79961240 79961887 -21418634 + MER51A LTR ERV1 2 634 0 360 0 0 0 chr15 79962254 79962294 -21418227 + (T)n Simple_repeat Simple_repeat 1 40 0 2255 108 0 10 chr15 79962775 79963089 -21417432 + AluSx SINE Alu 1 311 -1 2342 90 0 7 chr15 79963707 79964007 -21416514 + AluSx SINE Alu 1 298 -14 285 293 0 12 chr15 79964262 79964344 -21416177 + MIR3 SINE MIR 102 182 -26 1759 207 34 85 chr15 79964352 79964884 -21415637 - MLT1D LTR MaLR 0 505 1 294 359 51 0 chr15 79965038 79965194 -21415327 - MIR SINE MIR -7 255 92 1058 90 0 0 chr15 79965194 79965328 -21415193 + AluSq/x SINE Alu 1 134 -179 32 0 0 0 chr15 79965328 79965360 -21415161 + AT_rich Low_complexity Low_complexity 1 32 0 216 258 15 76 chr15 79965361 79965427 -21415094 - MIR SINE MIR -181 81 20 354 297 157 22 chr15 79965629 79965814 -21414707 + MIR SINE MIR 34 243 -19 1849 175 27 6 chr15 79966533 79966871 -21413650 - L1MA5 LINE L1 -35 6265 5921 2354 76 21 0 chr15 79968393 79968682 -21411839 - AluY SINE Alu -16 295 1 2581 203 65 17 chr15 79969720 79969835 -21410686 - MLT1F1 LTR MaLR -3 564 456 2176 120 0 7 chr15 79969835 79970136 -21410385 + AluSx SINE Alu 1 299 -13 2581 203 65 17 chr15 79970136 79970558 -21409963 - MLT1F1 LTR MaLR -111 456 1 187 186 23 23 chr15 79971449 79971492 -21409029 + MIR SINE MIR 85 127 -81 241 348 36 0 chr15 79971514 79971626 -21408895 - MIR SINE MIR -17 245 130 865 128 0 0 chr15 79971678 79971795 -21408726 + AluJo/FLAM SINE Alu 2 118 -184 2347 110 0 0 chr15 79971796 79972105 -21408416 - AluSx SINE Alu -3 309 1 680 247 61 48 chr15 79972143 79972374 -21408147 + MIR SINE MIR 2 235 -27 238 320 135 46 chr15 79974047 79974156 -21406365 + L2 LINE L2 1800 1898 -1416 1991 144 3 10 chr15 79974156 79974461 -21406060 - AluJb SINE Alu -9 303 1 238 320 135 46 chr15 79974461 79974920 -21405601 + L2 LINE L2 1898 2419 -895 334 333 69 32 chr15 79974930 79975119 -21405402 - MIR SINE MIR 0 262 67 2808 99 8 8 chr15 79975140 79975504 -21405017 + THE1B LTR MaLR 1 364 0 602 321 71 57 chr15 79975504 79976307 -21404214 + L2 LINE L2 2433 3259 -13 219 69 0 0 chr15 79976307 79976336 -21404185 + (TGGA)n Simple_repeat Simple_repeat 1 29 0 201 382 78 0 chr15 79976587 79976689 -21403832 + MIR SINE MIR 23 132 -76 284 339 9 0 chr15 79977934 79978049 -21402472 + MIR3 SINE MIR 90 205 -3 191 133 0 0 chr15 79978208 79978238 -21402283 - L2 LINE L2 -2 3270 3241 2257 120 0 0 chr15 79978840 79979148 -21401373 + AluSg SINE Alu 1 308 -2 189 74 0 0 chr15 79979467 79979494 -21401027 + (CA)n Simple_repeat Simple_repeat 2 28 0 229 216 20 0 chr15 79979573 79979624 -21400897 + LTR30 LTR ERV1 1 52 -670 1387 101 115 5 chr15 79979624 79979833 -21400688 + LTR12 LTR ERV1 53 284 -430 285 273 11 0 chr15 79979833 79979921 -21400600 + LTR30 LTR ERV1 552 640 -82 820 107 0 9 chr15 79979923 79980035 -21400486 + LTR12 LTR ERV1 479 589 -125 2226 108 0 0 chr15 79980133 79980430 -21400091 + AluY SINE Alu 1 297 -14 2211 85 0 0 chr15 79980813 79981110 -21399411 + AluY SINE Alu 9 305 0 1359 98 0 0 chr15 79981114 79981288 -21399233 + AluSg/x SINE Alu 123 296 -14 352 293 202 31 chr15 79981288 79981605 -21398916 + HAL1b LINE L1 404 774 -574 1201 211 11 39 chr15 79981619 79981898 -21398623 + AluJo SINE Alu 7 277 -35 186 43 0 0 chr15 79981909 79981932 -21398589 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2377 86 0 3 chr15 79982245 79982549 -21397972 + AluSc SINE Alu 1 303 -6 3282 192 13 30 chr15 79982701 79983760 -21396761 + L1M4 LINE L1 4597 5646 -538 2127 186 16 16 chr15 79983760 79984125 -21396396 - MLT1A1 LTR MaLR 0 365 1 3282 192 13 30 chr15 79984125 79984292 -21396229 + L1M4 LINE L1 5646 5814 -370 298 157 0 0 chr15 79984395 79984446 -21396075 - FLAM_A SINE Alu 0 133 83 1539 276 91 25 chr15 79984454 79984610 -21395911 - L1ME3A LINE L1 -233 5937 5793 201 74 0 0 chr15 79984610 79984637 -21395884 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1539 276 91 25 chr15 79984637 79984687 -21395834 - L1ME3A LINE L1 -377 5793 5748 1947 162 10 0 chr15 79984687 79984996 -21395525 + AluSq SINE Alu 1 312 -1 1539 276 91 25 chr15 79984996 79985708 -21394813 - L1ME3A LINE L1 -422 5748 4950 2142 109 7 0 chr15 79985765 79986050 -21394471 - AluSc SINE Alu -22 287 1 532 281 63 39 chr15 79986291 79986576 -21393945 + L1ME LINE L1 5400 5691 -430 232 214 29 14 chr15 79986652 79986722 -21393799 + L1ME4a LINE L1 6051 6121 0 755 204 139 19 chr15 79988256 79988472 -21392049 - MIR SINE MIR 0 262 21 1012 243 107 38 chr15 79988493 79988839 -21391682 + Charlie7 DNA MER1_type 177 546 -2066 * 1700 246 94 41 chr15 79988821 79989459 -21391062 + Charlie7 DNA MER1_type 1665 2354 -258 1888 213 171 4 chr15 79989459 79989920 -21390601 + MLT1F LTR MaLR 1 538 -4 1700 246 94 41 chr15 79989920 79990070 -21390451 + Charlie7 DNA MER1_type 2354 2495 -117 812 252 16 10 chr15 79990215 79990430 -21390091 + MIR SINE MIR 25 245 -17 27 29 0 0 chr15 79991420 79991454 -21389067 + AT_rich Low_complexity Low_complexity 1 34 0 1645 187 13 23 chr15 79991463 79991773 -21388748 + AluJb SINE Alu 1 307 -5 1824 141 22 0 chr15 79992727 79993030 -21387491 + AluSx SINE Alu 1 309 0 21 0 0 0 chr15 79993782 79993803 -21386718 + AT_rich Low_complexity Low_complexity 1 21 0 2376 81 0 0 chr15 79994082 79994379 -21386142 + AluY SINE Alu 1 297 -14 540 122 54 0 chr15 79994467 79994541 -21385980 + AluS SINE Alu 7 84 -228 521 339 54 35 chr15 79994805 79995118 -21385403 - L3 LINE CR1 -104 1473 1155 231 424 0 0 chr15 79997775 79997860 -21382661 - L2 LINE L2 -84 3188 3104 2788 29 0 0 chr15 79998019 79998326 -21382195 - AluYa5 SINE Alu -4 307 1 342 256 98 55 chr15 79999251 79999505 -21381016 + L1M4 LINE L1 4763 5027 -1119 1034 170 69 11 chr15 79999596 79999784 -21380737 + L1PA16 LINE L1 5959 6157 -9 186 260 50 90 chr15 80000606 80000706 -21379815 - MIR3 SINE MIR -29 179 84 228 67 0 0 chr15 80001231 80001261 -21379260 + (GA)n Simple_repeat Simple_repeat 1 30 0 522 121 0 103 chr15 80002794 80002857 -21377664 + Charlie4 DNA MER1_type 1798 1845 -116 2298 119 0 0 chr15 80002857 80003167 -21377354 - AluSx SINE Alu -2 310 1 522 121 0 103 chr15 80003167 80003219 -21377302 + Charlie4 DNA MER1_type 1845 1901 -60 278 259 22 79 chr15 80003525 80003664 -21376857 - MIR SINE MIR 0 262 132 853 154 0 14 chr15 80003743 80003886 -21376635 + AluJo SINE Alu 1 141 -171 1734 125 3 80 chr15 80003886 80004199 -21376322 + AluJo SINE Alu 1 289 -23 1191 227 67 32 chr15 80004207 80004816 -21375705 - L2 LINE L2 -80 3233 2608 1885 115 32 4 chr15 80004816 80005094 -21375427 + AluSx SINE Alu 1 286 -26 302 281 83 119 chr15 80006037 80006507 -21374014 + L1M2 LINE L1 748 1200 -5649 2043 112 49 0 chr15 80006696 80007001 -21373520 + Tigger2 DNA MER2_type 2389 2708 -10 1049 157 23 42 chr15 80007001 80007122 -21373399 + MER45B DNA AcHobo 767 889 -692 183 80 0 0 chr15 80007122 80007147 -21373374 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2233 132 0 0 chr15 80007157 80007468 -21373053 + AluSx SINE Alu 1 311 -1 1049 157 23 42 chr15 80007468 80007551 -21372970 + MER45B DNA AcHobo 898 978 -62 337 286 50 29 chr15 80008364 80008504 -21372017 + MIR3 SINE MIR 45 187 -21 260 255 297 0 chr15 80008756 80008901 -21371620 - MIR SINE MIR -13 249 62 267 272 48 8 chr15 80009136 80009261 -21371260 - MIR3 SINE MIR -19 189 60 1091 224 84 30 chr15 80009446 80009745 -21370776 + MLT1B LTR MaLR 76 390 0 283 169 24 36 chr15 80009745 80009828 -21370693 - L1M LINE L1 -2414 5371 5290 2224 128 0 0 chr15 80009911 80010223 -21370298 + AluSx SINE Alu 1 312 0 2336 78 10 10 chr15 80010777 80011086 -21369435 - AluY SINE Alu -2 309 1 1383 135 23 9 chr15 80011086 80011301 -21369220 - L1MC1 LINE L1 -8 6325 6108 314 304 96 30 chr15 80011675 80011810 -21368711 + L2 LINE L2 2925 3068 -204 34 55 0 0 chr15 80012784 80012839 -21367682 + AT_rich Low_complexity Low_complexity 1 55 0 323 288 97 99 chr15 80016500 80016986 -21363535 + L1M2 LINE L1 798 1282 -5567 1889 287 86 35 chr15 80017565 80018382 -21362139 + HAL1 LINE L1 1 775 -1732 2122 112 0 14 chr15 80018382 80018676 -21361845 - AluSx SINE Alu -22 290 1 1889 287 86 35 chr15 80018676 80018841 -21361680 + HAL1 LINE L1 775 930 -1577 1304 162 39 26 chr15 80018841 80019070 -21361451 + MER46A DNA MER2_type 1 232 -4 1889 287 86 35 chr15 80019070 80019179 -21361342 + HAL1 LINE L1 930 1149 -1358 752 178 82 7 chr15 80019183 80019318 -21361203 + AluJb SINE Alu 2 146 -166 340 54 18 18 chr15 80019499 80019555 -21360966 + (CAGG)n Simple_repeat Simple_repeat 3 58 0 2382 91 0 0 chr15 80020367 80020665 -21359856 - AluSg SINE Alu -12 298 1 289 288 131 38 chr15 80020711 80020871 -21359650 - MIR SINE MIR -5 257 83 200 346 59 0 chr15 80021046 80021147 -21359374 - MIR SINE MIR -57 151 45 252 274 259 7 chr15 80021316 80021451 -21359070 + L2 LINE L2 2898 3066 -206 447 252 38 23 chr15 80022673 80022804 -21357717 - MER94 DNA DNA 0 134 2 200 267 53 40 chr15 80023062 80023137 -21357384 + L2 LINE L2 3234 3309 -4 312 365 143 18 chr15 80023861 80024203 -21356318 - L2 LINE L2 -2753 561 177 402 256 88 50 chr15 80024399 80024559 -21355962 + MIR SINE MIR 49 214 -48 301 312 106 7 chr15 80025112 80025253 -21355268 + Charlie8 DNA MER1_type 4 158 -2259 24 32 0 0 chr15 80025428 80025459 -21355062 + AT_rich Low_complexity Low_complexity 1 31 0 583 235 50 0 chr15 80025555 80025674 -21354847 + FLAM_C SINE Alu 2 126 -17 237 186 23 12 chr15 80025679 80025765 -21354756 + (TA)n Simple_repeat Simple_repeat 1 87 0 25 0 0 0 chr15 80025771 80025796 -21354725 + AT_rich Low_complexity Low_complexity 1 25 0 2291 94 0 0 chr15 80027322 80027621 -21352900 + AluSx SINE Alu 1 299 -13 225 182 0 0 chr15 80027767 80027811 -21352710 + L1MB7 LINE L1 6132 6175 -9 182 309 72 66 chr15 80028030 80028182 -21352339 + L3 LINE CR1 488 640 -937 205 290 0 29 chr15 80028210 80028279 -21352242 + L3 LINE CR1 889 955 -622 2235 117 3 7 chr15 80028352 80028659 -21351862 + AluSg SINE Alu 1 306 -4 495 187 70 21 chr15 80028845 80028990 -21351531 - MIR SINE MIR -4 258 104 414 200 70 0 chr15 80029039 80029139 -21351382 - MER103 DNA DNA -15 151 45 989 141 6 57 chr15 80029140 80029317 -21351204 - AluJb SINE Alu -8 304 137 248 311 81 56 chr15 80029668 80029829 -21350692 + MIR SINE MIR 46 210 -52 315 185 103 82 chr15 80031648 80031805 -21348716 + MIR SINE MIR 1 150 -63 186 250 14 179 chr15 80032431 80032571 -21347950 - MER5B DNA MER1_type 0 178 62 198 103 0 0 chr15 80032581 80032610 -21347911 + (TTTTC)n Simple_repeat Simple_repeat 3 31 0 723 165 76 32 chr15 80032611 80032769 -21347752 - FRAM SINE Alu -1 165 1 180 336 29 29 chr15 80032826 80032930 -21347591 - MIR SINE MIR -61 147 44 437 343 101 19 chr15 80033703 80034070 -21346451 + L2 LINE L2 2140 2536 -778 2816 231 45 5 chr15 80034188 80034989 -21345532 - L1M4 LINE L1 -2845 3301 2469 548 157 0 0 chr15 80035032 80035121 -21345400 - L1MCc LINE L1 -5514 909 821 1214 291 28 14 chr15 80035385 80035822 -21344699 - L1MCc LINE L1 -5949 474 32 522 238 33 0 chr15 80035881 80036032 -21344489 - L1MEc LINE L1 -2653 3562 3407 643 258 197 44 chr15 80036045 80036653 -21343868 - L1MEc LINE L1 -4097 2299 1599 8630 190 54 17 chr15 80036707 80038658 -21341863 - L1MEc LINE L1 -1193 5022 2999 1972 100 4 4 chr15 80038662 80038923 -21341598 - AluSg SINE Alu -13 297 37 260 239 97 52 chr15 80039496 80039651 -21340870 + L1MC/D LINE L1 5269 5430 -2378 731 204 0 0 chr15 80040462 80040599 -21339922 + MER63 DNA MER1_type 899 1035 -27 233 318 28 34 chr15 80041268 80041447 -21339074 - L1MEc LINE L1 -3238 2977 2800 310 323 106 40 chr15 80041944 80042322 -21338199 - L1MEc LINE L1 -3875 2521 2119 460 269 28 48 chr15 80042845 80042865 -21337656 - L2 LINE L2 0 3313 3294 1835 185 48 9 chr15 80042865 80043200 -21337321 - MER7A DNA MER2_type 0 346 1 460 269 28 48 chr15 80043200 80043324 -21337197 - L2 LINE L2 -19 3294 3172 2231 95 20 3 chr15 80043736 80044032 -21336489 + AluSx SINE Alu 1 301 -11 326 279 66 49 chr15 80044063 80044289 -21336232 - HAL1 LINE L1 -1340 1167 938 311 237 41 0 chr15 80044668 80044765 -21335756 + (TA)n Simple_repeat Simple_repeat 2 102 0 2356 101 3 3 chr15 80046021 80046329 -21334192 + AluSq SINE Alu 1 308 -5 1375 179 5 0 chr15 80046506 80046730 -21333791 - AluSx SINE Alu -86 226 2 1070 194 52 48 chr15 80046732 80047000 -21333521 - Charlie4 DNA MER1_type -1692 269 1 324 237 0 43 chr15 80047033 80047126 -21333395 - MIR SINE MIR -77 131 43 * 343 270 119 38 chr15 80047091 80047250 -21333271 + MIR3 SINE MIR 6 177 -31 305 259 27 88 chr15 80047801 80047948 -21332573 + MER5A DNA MER1_type 52 189 0 335 242 39 90 chr15 80047954 80048144 -21332377 - MER5B DNA MER1_type -11 167 1 208 171 49 0 chr15 80048144 80048184 -21332337 + MIR3 SINE MIR 153 194 -14 739 284 105 43 chr15 80048258 80048628 -21331893 + Charlie8 DNA MER1_type 38 430 -1987 277 206 73 0 chr15 80048633 80048701 -21331820 + Charlie8 DNA MER1_type 1345 1417 -1000 1974 160 0 6 chr15 80048784 80049097 -21331424 + AluJb SINE Alu 1 311 -1 297 321 64 18 chr15 80049416 80049525 -21330996 + MIR SINE MIR 23 136 -72 565 224 13 19 chr15 80049681 80049693 -21330828 - L1MCa LINE L1 -3025 3401 3390 2119 130 10 0 chr15 80049693 80050001 -21330520 - AluSq SINE Alu -2 311 1 565 224 13 19 chr15 80050001 80050144 -21330377 - L1MCa LINE L1 -3036 3390 3247 288 77 0 0 chr15 80050146 80050185 -21330336 + (GA)n Simple_repeat Simple_repeat 2 40 0 * 489 78 56 0 chr15 80050183 80050273 -21330248 + GA-rich Low_complexity Low_complexity 2 96 0 3862 155 50 40 chr15 80050275 80052321 -21328200 - L1MCa LINE L1 -3276 3150 990 1003 232 62 41 chr15 80052333 80052449 -21328072 - L1MC4a LINE L1 -1148 6637 6525 3572 78 13 0 chr15 80052449 80052896 -21327625 - L1PA10 LINE L1 -10 6158 5706 1003 232 62 41 chr15 80052896 80053149 -21327372 - L1MC4a LINE L1 -1260 6525 6250 285 153 82 209 chr15 80053169 80053277 -21327244 - L1ME1 LINE L1 -15 6151 6077 3300 11 0 22 chr15 80053277 80053643 -21326878 - L1PA4 LINE L1 -4 6151 5794 285 153 82 209 chr15 80053643 80053730 -21326791 - L1ME1 LINE L1 -89 6077 5981 1167 209 121 9 chr15 80054125 80054611 -21325910 + MER20B DNA MER1_type 224 781 -2 395 272 15 21 chr15 80054612 80054780 -21325741 + L1ME4a LINE L1 5649 5817 -345 24 0 0 0 chr15 80054854 80054878 -21325643 + AT_rich Low_complexity Low_complexity 1 24 0 456 255 65 19 chr15 80055240 80055456 -21325065 + L1ME4a LINE L1 5895 6120 -1 2393 74 3 0 chr15 80055485 80055783 -21324738 + AluY SINE Alu 1 299 -12 1088 135 6 12 chr15 80055802 80055965 -21324556 - U1 snRNA snRNA -2 163 2 1325 101 268 4 chr15 80057176 80057404 -21323117 + AluSq SINE Alu 1 288 -15 2322 255 129 12 chr15 80057640 80058823 -21321698 + L1ME3A LINE L1 4850 6169 -1 1697 154 32 45 chr15 80060440 80060752 -21319769 + AluJo SINE Alu 1 308 -4 1031 190 50 15 chr15 80061103 80061303 -21319218 - AluJo SINE Alu -20 292 86 195 42 0 0 chr15 80061911 80061935 -21318586 + (A)n Simple_repeat Simple_repeat 1 24 0 184 376 0 21 chr15 80062863 80062956 -21317565 - MIR SINE MIR -164 98 8 2189 116 0 3 chr15 80063027 80063321 -21317200 - AluSg SINE Alu -15 295 3 2197 77 3 48 chr15 80063578 80063890 -21316631 - AluSg SINE Alu -12 298 1 713 286 125 23 chr15 80063893 80064361 -21316160 - L1ME3A LINE L1 -230 5940 5406 219 36 0 0 chr15 80065752 80065780 -21314741 + (CA)n Simple_repeat Simple_repeat 2 29 0 361 250 174 7 chr15 80066691 80066835 -21313686 + MIR SINE MIR 94 261 -1 269 289 87 58 chr15 80067093 80067439 -21313082 + L1M4 LINE L1 3634 3989 -2157 229 130 0 0 chr15 80067482 80067528 -21312993 - LTR66 LTR ERVL -171 439 394 228 139 0 0 chr15 80067492 80067535 -21312986 + LTR66 LTR ERVL 394 436 -174 * 226 250 50 60 chr15 80067563 80067663 -21312858 + L1M4 LINE L1 4061 4159 -1987 376 123 12 49 chr15 80067746 80067827 -21312694 + L1MB2 LINE L1 6093 6170 -1 2213 90 7 7 chr15 80067934 80068233 -21312288 - AluSq SINE Alu -14 299 1 21 36 0 0 chr15 80068316 80068344 -21312177 + AT_rich Low_complexity Low_complexity 1 28 0 718 241 13 0 chr15 80068537 80068695 -21311826 + MER3 DNA MER1_type 50 209 0 342 322 31 35 chr15 80068772 80068999 -21311522 + L1ME3A LINE L1 3725 3950 -2196 402 39 0 0 chr15 80069514 80069566 -21310955 + (CA)n Simple_repeat Simple_repeat 1 52 0 1440 274 77 25 chr15 80070407 80070792 -21309729 + MLT1G1 LTR MaLR 1 464 -131 2126 133 0 0 chr15 80070792 80071092 -21309429 + AluSq SINE Alu 1 300 -13 1440 274 77 25 chr15 80071092 80071232 -21309289 + MLT1G1 LTR MaLR 464 595 0 2218 111 0 3 chr15 80071457 80071755 -21308766 + AluSg SINE Alu 1 297 -13 445 43 0 29 chr15 80071762 80071832 -21308689 + (CA)n Simple_repeat Simple_repeat 2 69 0 373 284 92 50 chr15 80072551 80072692 -21307829 - MIR3 SINE MIR -31 177 31 360 246 224 35 chr15 80073117 80073349 -21307172 + MLT1J LTR MaLR 230 505 -6 1317 281 85 39 chr15 80076236 80077814 -21302707 + L1ME3A LINE L1 4283 5946 -224 2275 223 48 31 chr15 80077879 80078462 -21302059 + MLT1E LTR MaLR 1 593 0 22 56 0 0 chr15 80079282 80079318 -21301203 + AT_rich Low_complexity Low_complexity 1 36 0 443 241 101 68 chr15 80081947 80082225 -21298296 - L3 LINE CR1 -136 1441 1155 357 290 61 8 chr15 80082366 80082497 -21298024 - MIR SINE MIR -26 236 99 192 200 0 0 chr15 80083066 80083111 -21297410 + (CTCA)n Simple_repeat Simple_repeat 3 47 0 231 235 20 0 chr15 80083135 80083186 -21297335 + (TTCA)n Simple_repeat Simple_repeat 2 53 0 257 243 29 0 chr15 80083472 80083542 -21296979 + MER113 DNA MER1_type? 15 86 -435 250 337 61 41 chr15 80083746 80083942 -21296579 - L2 LINE L2 -565 2749 2550 21 0 0 0 chr15 80085186 80085207 -21295314 + AT_rich Low_complexity Low_complexity 1 21 0 2546 255 87 40 chr15 80085282 80085434 -21295087 - L2 LINE L2 -563 2751 2608 1588 104 0 0 chr15 80085434 80085646 -21294875 - AluSg/x SINE Alu -12 300 89 2546 255 87 40 chr15 80085646 80086399 -21294122 - L2 LINE L2 -706 2608 1803 257 271 155 36 chr15 80088867 80089118 -21291403 + L1ME4a LINE L1 5521 5801 -320 509 249 202 0 chr15 80089123 80089296 -21291225 - MIR SINE MIR -52 210 3 262 241 65 19 chr15 80089301 80089409 -21291112 + L1ME4a LINE L1 5810 5922 -199 209 33 33 0 chr15 80089863 80089893 -21290628 + (GAAAA)n Simple_repeat Simple_repeat 1 31 0 475 229 255 10 chr15 80090265 80090457 -21290064 - MIR SINE MIR -2 260 22 345 291 133 37 chr15 80091809 80092163 -21288358 - L1M4 LINE L1 -3632 2514 2127 315 247 0 37 chr15 80093620 80093701 -21286820 - MIR3 SINE MIR -31 177 100 426 359 90 14 chr15 80094407 80094619 -21285902 + MIR SINE MIR 21 248 -14 4774 203 41 30 chr15 80094826 80096169 -21284352 + L1MD1 LINE L1 3813 5189 -1053 2120 101 14 10 chr15 80096169 80096493 -21284028 + AluSx SINE Alu 1 312 0 4774 203 41 30 chr15 80096493 80097558 -21282963 + L1MD1 LINE L1 5189 6241 -1 595 296 56 89 chr15 80098116 80098511 -21282010 + L2 LINE L2 2891 3272 0 23 33 0 0 chr15 80098815 80098845 -21281676 + AT_rich Low_complexity Low_complexity 1 30 0 1957 164 3 0 chr15 80099197 80099502 -21281019 + AluSx SINE Alu 1 306 -6 483 271 72 36 chr15 80100052 80100218 -21280303 - MIR SINE MIR -2 260 89 267 236 0 0 chr15 80100327 80100382 -21280139 - L2 LINE L2 -8 3264 3210 349 207 146 0 chr15 80100437 80100519 -21280002 - MER81 DNA DNA 0 114 21 671 263 143 56 chr15 80100986 80102131 -21278390 - L1MC/D LINE L1 -513 5657 4479 708 216 18 18 chr15 80102137 80102308 -21278213 - FRAM SINE Alu -5 171 1 1860 278 72 43 chr15 80102453 80103420 -21277101 - L1MC/D LINE L1 -1945 4201 3207 21 0 0 0 chr15 80103430 80103451 -21277070 + AT_rich Low_complexity Low_complexity 1 21 0 1166 110 60 37 chr15 80103607 80103825 -21276696 - L1MC2 LINE L1 -8 6336 6114 350 241 103 7 chr15 80103836 80103981 -21276540 - L1MC/D LINE L1 -2925 3221 3063 1847 158 27 14 chr15 80104311 80104608 -21275913 + AluJb SINE Alu 1 301 -11 474 260 49 0 chr15 80106045 80106168 -21274353 + L2 LINE L2 3185 3313 0 367 294 181 6 chr15 80106644 80106804 -21273717 - MIR SINE MIR -64 198 11 231 323 0 0 chr15 80106887 80106952 -21273569 + MER117 DNA MER1_type 4 68 -129 22 35 0 0 chr15 80108740 80108769 -21271752 + GC_rich Low_complexity Low_complexity 1 29 0 2250 75 31 3 chr15 80110127 80110419 -21270102 - AluSc SINE Alu -9 300 1 333 266 21 11 chr15 80110580 80110674 -21269847 - LTR67 LTR ERVL 0 557 463 2310 89 0 7 chr15 80111196 80111500 -21269021 - AluY SINE Alu -9 302 1 617 354 75 45 chr15 80112078 80112097 -21268424 + L2 LINE L2 2589 2606 -666 1648 83 13 18 chr15 80112097 80112325 -21268196 + MER30 DNA MER1_type 4 230 0 617 354 75 45 chr15 80112325 80112955 -21267566 + L2 LINE L2 2606 3270 -2 1793 120 14 27 chr15 80113127 80113477 -21267044 - MER4A LTR ERV1 0 664 261 596 152 0 10 chr15 80113477 80113576 -21266945 - MER4A LTR ERV1 -566 98 1 363 335 66 20 chr15 80113844 80113996 -21266525 - MER5A DNA MER1_type -3 186 28 270 266 58 77 chr15 80113994 80114201 -21266320 - L2 LINE L2 -23 3290 3088 * 22 0 0 0 chr15 80114218 80114240 -21266281 + AT_rich Low_complexity Low_complexity 1 22 0 1947 94 64 0 chr15 80314676 80314942 -21065579 - AluSg SINE Alu -27 283 1 239 316 32 42 chr15 80317362 80317457 -21063064 + MER5B DNA MER1_type 64 157 -21 399 326 28 6 chr15 80317705 80317886 -21062635 + MER117 DNA MER1_type 11 195 -2 395 301 68 30 chr15 80319143 80319276 -21061245 - L2 LINE L2 -20 3252 3115 1531 237 160 23 chr15 80322458 80323057 -21057464 + LTR50 LTR ERVL 26 706 -89 436 156 130 0 chr15 80323065 80323142 -21057379 + 5S rRNA rRNA 2 88 -33 716 240 143 10 chr15 80327113 80327309 -21053212 - MIR SINE MIR -38 224 3 1471 102 0 0 chr15 80327487 80327673 -21052848 - AluSg1 SINE Alu -123 186 1 214 164 36 0 chr15 80327974 80328029 -21052492 + (TG)n Simple_repeat Simple_repeat 2 58 0 302 181 71 0 chr15 80328506 80328514 -21052007 + (TA)n Simple_repeat Simple_repeat 2 8 -129 1637 146 60 86 chr15 80328514 80328558 -21051963 - THE1C LTR MaLR 0 375 331 2028 117 7 7 chr15 80328558 80328849 -21051672 + AluSx SINE Alu 6 296 -16 1637 146 60 86 chr15 80328849 80329034 -21051487 - THE1C LTR MaLR -44 331 157 2277 103 0 7 chr15 80329034 80329336 -21051185 + AluSq SINE Alu 1 300 -13 1637 146 60 86 chr15 80329336 80329490 -21051031 - THE1C LTR MaLR -218 157 1 302 181 71 0 chr15 80329490 80329608 -21050913 + (TA)n Simple_repeat Simple_repeat 8 137 0 326 288 0 42 chr15 80329776 80329894 -21050627 - MIR SINE MIR -51 211 99 398 341 102 6 chr15 80329975 80330151 -21050370 - MIR3 SINE MIR -6 202 10 462 145 0 0 chr15 80330880 80330949 -21049572 + Tigger2 DNA MER2_type 1 69 -2649 * 2142 193 56 5 chr15 80330933 80331363 -21049158 + Tigger2 DNA MER2_type 2267 2718 0 325 274 71 35 chr15 80332258 80332371 -21048150 + MIR3 SINE MIR 71 187 -21 823 266 80 0 chr15 80333322 80333559 -21046962 - MIR SINE MIR 0 262 7 445 227 17 50 chr15 80333855 80333974 -21046547 - MIR SINE MIR -3 259 145 1034 181 74 120 chr15 80333976 80334368 -21046153 + MLT1C LTR MaLR 1 374 -93 5093 148 25 22 chr15 80334673 80335234 -21045287 - L1MB1 LINE L1 -13 6176 5618 279 0 0 0 chr15 80335234 80335265 -21045256 + (TA)n Simple_repeat Simple_repeat 1 31 0 884 169 0 22 chr15 80335267 80335403 -21045118 - FLAM_A SINE Alu 0 133 1 5093 148 25 22 chr15 80335403 80335527 -21044994 - L1MB1 LINE L1 -571 5618 5496 2143 123 0 10 chr15 80335527 80335829 -21044692 - AluSx SINE Alu -13 299 1 5093 148 25 22 chr15 80335829 80336030 -21044491 - L1MB1 LINE L1 -693 5496 5284 1949 136 55 27 chr15 80336282 80336612 -21043909 - MER44D DNA MER2_type 0 609 1 23 0 0 0 chr15 80337269 80337292 -21043229 + AT_rich Low_complexity Low_complexity 1 23 0 184 235 0 39 chr15 80338798 80338849 -21041672 - L3 LINE CR1 -5 1572 1524 207 200 67 0 chr15 80339449 80339494 -21041027 + L2 LINE L2 3224 3271 -1 201 176 0 0 chr15 80339592 80339626 -21040895 + T-rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr15 80341134 80341155 -21039366 + AT_rich Low_complexity Low_complexity 1 21 0 2140 109 0 3 chr15 80341179 80341473 -21039048 - AluSx SINE Alu -19 293 1 1284 180 150 26 chr15 80342648 80342954 -21037567 + MER2 DNA MER2_type 1 344 0 304 127 48 0 chr15 80343945 80344008 -21036513 + CT-rich Low_complexity Low_complexity 4 69 0 562 110 0 0 chr15 80345715 80345788 -21034733 + AluJ/FRAM SINE Alu 224 296 -16 490 264 73 55 chr15 80345807 80346136 -21034385 + L1ME4a LINE L1 5606 5940 -181 258 32 0 0 chr15 80346150 80346181 -21034340 + (TAA)n Simple_repeat Simple_repeat 3 33 0 721 271 65 0 chr15 80346191 80346390 -21034131 - MIR SINE MIR 0 262 51 633 293 75 5 chr15 80346398 80346586 -21033935 + LTR16B LTR ERVL 1 201 -263 733 164 9 0 chr15 80346586 80346702 -21033819 + FLAM_A SINE Alu 16 132 -10 1365 122 15 5 chr15 80346710 80346915 -21033606 + AluSq SINE Alu 21 227 -86 1938 123 0 4 chr15 80347032 80347293 -21033228 - AluSx SINE Alu -52 260 1 2252 159 84 0 chr15 80347293 80347363 -21033158 - L1MCa LINE L1 -4105 2321 2258 2392 78 0 0 chr15 80347363 80347657 -21032864 - AluY SINE Alu -1 310 17 2252 159 84 0 chr15 80347657 80348039 -21032482 - L1MCa LINE L1 -4168 2258 1831 1300 131 0 16 chr15 80348039 80348230 -21032291 - AluSg/x SINE Alu -18 292 105 2253 101 0 13 chr15 80349402 80349719 -21030802 + AluSq SINE Alu 1 313 0 1217 96 0 0 chr15 80350148 80350304 -21030217 + AluSg/x SINE Alu 139 294 -16 1319 159 9 0 chr15 80350305 80350532 -21029989 - L1 LINE L1 -1924 4222 3994 2284 183 20 62 chr15 80350533 80350895 -21029626 - L1 LINE L1 -2997 3149 2816 1784 170 0 7 chr15 80350895 80351183 -21029338 + AluJo SINE Alu 1 286 -26 2284 183 20 62 chr15 80351183 80351372 -21029149 - L1 LINE L1 -3330 2816 2621 2792 166 30 0 chr15 80351385 80351878 -21028643 + L1 LINE L1 4397 4904 -1242 2282 107 3 0 chr15 80351986 80352284 -21028237 + AluSx SINE Alu 1 299 -13 743 130 26 88 chr15 80352284 80352348 -21028173 + L1MCa LINE L1 2359 2425 -4168 1648 165 17 17 chr15 80352348 80352639 -21027882 + AluJb SINE Alu 1 291 -21 743 130 26 88 chr15 80352639 80352834 -21027687 + L1MCa LINE L1 2425 2644 -3949 207 0 0 0 chr15 80352865 80352888 -21027633 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2495 40 3 10 chr15 80352895 80353191 -21027330 + AluY SINE Alu 1 294 -17 272 239 0 0 chr15 80353220 80353291 -21027230 + L1MCa LINE L1 2596 2666 -3760 1693 157 4 25 chr15 80353291 80353571 -21026950 + AluJb SINE Alu 1 274 -38 428 301 6 26 chr15 80353859 80354015 -21026506 - L1MCa LINE L1 -5617 799 647 1228 152 5 38 chr15 80354162 80354373 -21026148 - AluJo SINE Alu -108 204 1 23 33 0 0 chr15 80354493 80354523 -21025998 + AT_rich Low_complexity Low_complexity 1 30 0 1848 142 51 0 chr15 80354523 80354821 -21025700 + AluSx SINE Alu 3 314 0 331 281 156 30 chr15 80356263 80356398 -21024123 + L2 LINE L2 3121 3272 0 3965 249 21 24 chr15 80356635 80357867 -21022654 + L1MCa LINE L1 2683 3911 -2515 2157 108 7 0 chr15 80357869 80358164 -21022357 - AluSq SINE Alu -16 297 1 1914 199 64 7 chr15 80358301 80358738 -21021783 + MLT1C LTR MaLR 6 467 0 274 371 73 0 chr15 80359872 80359996 -21020525 - MIR3 SINE MIR -47 161 29 1286 84 0 6 chr15 80360642 80360809 -21019712 - AluSx SINE Alu -93 219 54 24802 19 1 0 chr15 80361479 80365119 -21015402 - L1HS LINE L1 0 6155 2512 748 245 29 111 chr15 80365347 80365653 -21014868 + Charlie2 DNA MER1_type 38 318 -2464 2217 202 22 67 chr15 80365665 80366099 -21014422 + Charlie2 DNA MER1_type 1860 2255 -607 2393 49 0 0 chr15 80366099 80366385 -21014136 + AluY SINE Alu 1 286 -25 2217 202 22 67 chr15 80366385 80366627 -21013894 + Charlie2 DNA MER1_type 2255 2506 -356 1526 188 10 29 chr15 80366627 80366936 -21013585 + AluJb SINE Alu 1 303 -9 388 171 27 0 chr15 80366946 80367027 -21013494 - L1MB8 LINE L1 -41 6137 6059 23 54 0 0 chr15 80367069 80367106 -21013415 + AT_rich Low_complexity Low_complexity 1 37 0 2000 139 7 0 chr15 80367444 80367746 -21012775 - AluJo SINE Alu -8 304 1 253 313 101 35 chr15 80367883 80368199 -21012322 + L2 LINE L2 2038 2374 -940 311 288 41 0 chr15 80368360 80368433 -21012088 - MER5A DNA MER1_type -87 102 27 2260 94 0 0 chr15 80368987 80369284 -21011237 + AluSx SINE Alu 8 304 -8 5029 205 24 25 chr15 80371523 80371744 -21008777 + L1MB8 LINE L1 2204 2424 -3722 2456 53 0 0 chr15 80371744 80372045 -21008476 + AluY SINE Alu 2 302 -9 5029 205 24 25 chr15 80372045 80373182 -21007339 + L1MB8 LINE L1 2424 3561 -2585 1427 112 0 23 chr15 80373447 80373662 -21006859 + AluSg/x SINE Alu 80 289 -21 1387 169 11 22 chr15 80373685 80373957 -21006564 + L1MB8 LINE L1 3505 3773 -2373 239 116 0 47 chr15 80373958 80374001 -21006520 + Alu SINE Alu 127 167 -136 4343 167 5 40 chr15 80374066 80375092 -21005429 + L1MB8 LINE L1 5077 6063 -115 1721 152 3 7 chr15 80375095 80375385 -21005136 + AluJb SINE Alu 1 289 -23 550 159 0 124 chr15 80375405 80375470 -21005051 + L1MB8 LINE L1 6052 6091 -87 2397 64 0 6 chr15 80375470 80375782 -21004739 + AluY SINE Alu 2 311 0 550 159 0 124 chr15 80375782 80375861 -21004660 + L1MB8 LINE L1 6091 6178 0 2174 61 0 34 chr15 80375882 80376175 -21004346 + AluY SINE Alu 1 283 -28 348 64 0 0 chr15 80376175 80376222 -21004299 + (CA)n Simple_repeat Simple_repeat 2 48 0 276 100 0 0 chr15 80376473 80376513 -21004008 + (T)n Simple_repeat Simple_repeat 1 40 0 380 152 30 0 chr15 80376942 80377008 -21003513 - U3 snRNA snRNA -145 72 5 2235 91 0 3 chr15 80377703 80378001 -21002520 - AluSq SINE Alu -15 298 2 233 279 133 103 chr15 80378194 80378359 -21002162 - L2 LINE L2 -86 3186 3017 22 0 0 0 chr15 80379061 80379083 -21001438 + AT_rich Low_complexity Low_complexity 1 22 0 348 88 309 0 chr15 80380853 80380921 -20999600 - AluY SINE Alu -1 300 212 462 251 204 6 chr15 80381160 80381327 -20999194 - MIR SINE MIR -11 251 52 198 234 85 0 chr15 80381563 80381610 -20998911 - MIR SINE MIR -62 146 96 186 269 104 100 chr15 80382757 80382859 -20997662 - MIR SINE MIR 0 262 162 864 163 0 0 chr15 80382859 80382988 -20997533 + FLAM_A SINE Alu 1 129 -4 186 269 104 100 chr15 80382988 80383134 -20997387 - MIR SINE MIR -100 162 13 204 40 0 0 chr15 80383913 80383938 -20996583 + (TG)n Simple_repeat Simple_repeat 1 25 0 2128 117 0 0 chr15 80384580 80384878 -20995643 + AluSx SINE Alu 1 298 -14 257 264 236 9 chr15 80385482 80385588 -20994933 + MIR3 SINE MIR 47 176 -32 397 209 127 18 chr15 80385917 80386027 -20994494 + L2 LINE L2 3188 3309 -4 1435 65 5 5 chr15 80386562 80386771 -20993750 + AluSq SINE Alu 100 308 0 1597 63 0 18 chr15 80387042 80387264 -20993257 + AluY SINE Alu 1 218 -93 2010 104 4 0 chr15 80387758 80388036 -20992485 + AluSx SINE Alu 1 279 -33 378 0 0 0 chr15 80388040 80388082 -20992439 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 718 318 77 36 chr15 80388267 80388629 -20991892 - L3 LINE CR1 -229 1348 972 1890 125 4 11 chr15 80388836 80389117 -20991404 + AluSx SINE Alu 1 279 -33 273 29 0 0 chr15 80389118 80389152 -20991369 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 239 170 38 19 chr15 80389277 80389330 -20991191 + L2 LINE L2 3217 3270 -2 1987 134 0 0 chr15 80389984 80390298 -20990223 + AluSx SINE Alu 1 314 0 2280 76 0 16 chr15 80390955 80391269 -20989252 - AluY SINE Alu -2 309 1 2260 56 0 21 chr15 80391276 80391605 -20988916 - AluSg SINE Alu 0 323 1 345 299 103 46 chr15 80392031 80392312 -20988209 + L1ME4a LINE L1 5565 5861 -260 907 163 0 0 chr15 80392323 80392476 -20988045 - FRAM SINE Alu -6 170 18 201 206 39 20 chr15 80392618 80392720 -20987801 + (TA)n Simple_repeat Simple_repeat 1 104 0 2214 110 0 3 chr15 80392750 80393060 -20987461 + AluSg SINE Alu 1 309 -1 897 73 16 0 chr15 80393700 80393824 -20986697 - AluSp/q SINE Alu -11 302 177 18380 46 57 3 chr15 80393935 80396234 -20984287 - L1P LINE L1 -3722 2424 2 1818 155 10 0 chr15 80397377 80397680 -20982841 + AluSx SINE Alu 1 306 -6 208 192 329 14 chr15 80398581 80398654 -20981867 + MIR3 SINE MIR 84 179 -29 212 176 135 27 chr15 80399439 80399513 -20981008 - L2 LINE L2 -43 3229 3148 510 316 69 17 chr15 80400255 80400486 -20980035 + MIR SINE MIR 20 262 0 205 313 16 0 chr15 80400729 80400793 -20979728 - MIR3 SINE MIR -7 201 137 182 297 31 16 chr15 80400819 80400883 -20979638 - MIR SINE MIR -57 151 87 220 239 0 0 chr15 80400956 80401002 -20979519 - MIR SINE MIR -120 88 43 219 300 0 0 chr15 80401396 80401446 -20979075 - MIR SINE MIR -64 144 95 584 111 11 0 chr15 80401587 80401677 -20978844 - FLAM_A SINE Alu -5 137 47 258 105 0 0 chr15 80403337 80403375 -20977146 + (CA)n Simple_repeat Simple_repeat 1 38 0 1876 218 89 10 chr15 80403376 80403858 -20976663 - MLT2B1 LTR ERVL 0 520 1 1987 167 38 12 chr15 80403883 80404224 -20976297 + MLT1A1 LTR MaLR 16 365 0 1836 117 0 94 chr15 80404250 80404591 -20975930 - AluSx SINE Alu -3 309 1 230 257 0 19 chr15 80405427 80405502 -20975019 + MIR3 SINE MIR 103 176 -32 229 184 0 0 chr15 80405554 80405592 -20974929 + L2 LINE L2 3227 3264 -8 215 300 17 0 chr15 80405604 80405664 -20974857 + L2 LINE L2 3204 3264 -8 195 324 118 0 chr15 80405727 80405795 -20974726 - L2 LINE L2 -57 3215 3140 22 0 0 0 chr15 80408089 80408111 -20972410 + AT_rich Low_complexity Low_complexity 1 22 0 2237 66 0 17 chr15 80408673 80408974 -20971547 - AluY SINE Alu -15 296 1 694 126 236 0 chr15 80409146 80409273 -20971248 - AluSp SINE Alu -19 294 138 359 254 18 36 chr15 80409283 80409393 -20971128 - L1ME4a LINE L1 -271 5850 5743 1601 91 9 0 chr15 80409798 80410018 -20970503 + AluSc SINE Alu 79 300 -9 814 213 94 45 chr15 80410126 80410362 -20970159 + MIR SINE MIR 7 257 -5 1693 167 7 20 chr15 80410362 80410667 -20969854 + AluJo SINE Alu 1 301 -11 322 282 185 40 chr15 80410806 80411033 -20969488 - L1ME4a LINE L1 -184 5937 5678 1961 135 3 3 chr15 80411590 80411893 -20968628 + AluSx SINE Alu 1 303 -9 367 241 145 48 chr15 80413414 80413559 -20966962 - MIR3 SINE MIR -26 182 24 819 216 36 116 chr15 80413968 80414037 -20966484 - MLT1H LTR MaLR -7 542 469 2109 125 0 0 chr15 80414037 80414348 -20966173 - AluY SINE Alu 0 311 1 819 216 36 116 chr15 80414348 80414771 -20965750 - MLT1H LTR MaLR -80 469 12 1904 128 35 17 chr15 80415160 80415450 -20965071 - AluSq SINE Alu -18 295 1 270 0 0 0 chr15 80416113 80416143 -20964378 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 503 320 152 10 chr15 80416149 80416543 -20963978 - L2 LINE L2 -23 3290 2841 521 323 100 14 chr15 80417251 80417681 -20962840 + L2 LINE L2 2806 3272 0 2246 95 20 10 chr15 80417982 80418278 -20962243 - AluSx SINE Alu -13 299 1 558 267 106 11 chr15 80419085 80419265 -20961256 + MIR SINE MIR 2 198 -64 2196 115 9 35 chr15 80419882 80419960 -20960561 - MER51B LTR ERV1 -2 375 296 2110 95 60 0 chr15 80419960 80420245 -20960276 + AluSx SINE Alu 1 302 -10 2196 115 9 35 chr15 80420245 80420506 -20960015 - MER51B LTR ERV1 -81 296 45 550 108 140 11 chr15 80420511 80420604 -20959917 - MER51A LTR ERV1 -529 105 1 239 299 0 13 chr15 80420608 80420685 -20959836 - MIR SINE MIR -117 91 16 1960 121 15 11 chr15 80420963 80421235 -20959286 - AluSx SINE Alu -39 273 1 189 318 48 0 chr15 80421440 80421503 -20959018 - MIR SINE MIR -113 149 84 2282 121 0 3 chr15 80421720 80422027 -20958494 - AluSp SINE Alu -7 306 1 2591 64 0 3 chr15 80422033 80422345 -20958176 - AluY SINE Alu 0 311 1 396 0 0 0 chr15 80422387 80422431 -20958090 + (TA)n Simple_repeat Simple_repeat 1 44 0 3663 154 88 0 chr15 80422431 80423091 -20957430 - L1MB7 LINE L1 -63 6121 5404 1806 163 29 32 chr15 80423154 80423497 -20957024 - MLT1A1 LTR MaLR -1 364 23 214 254 42 56 chr15 80424167 80424238 -20956283 - L2 LINE L2 -5 3267 3198 337 263 76 63 chr15 80424401 80424684 -20955837 - L2 LINE L2 -218 3054 2766 364 306 122 29 chr15 80424690 80425066 -20955455 + L1ME4a LINE L1 5709 6119 -2 23 0 0 0 chr15 80425165 80425188 -20955333 + AT_rich Low_complexity Low_complexity 1 23 0 1346 127 79 9 chr15 80425420 80425649 -20954872 - L1PB4 LINE L1 -7 6149 5905 1607 179 15 81 chr15 80425971 80426368 -20954153 - MLT1A2 LTR MaLR 0 374 4 392 258 155 47 chr15 80426890 80426987 -20953534 - L1ME4a LINE L1 -11 6110 6025 2037 112 0 85 chr15 80426987 80427317 -20953204 + AluSx SINE Alu 1 302 -10 392 258 155 47 chr15 80427317 80427435 -20953086 - L1ME4a LINE L1 -96 6025 5921 542 126 0 0 chr15 80427435 80427522 -20952999 - L1MA3 LINE L1 0 6305 6219 392 258 155 47 chr15 80427522 80427769 -20952752 - L1ME4a LINE L1 -200 5921 5584 807 280 112 21 chr15 80427845 80427888 -20952633 - L1ME4a LINE L1 -544 5577 5539 2354 112 0 6 chr15 80427888 80428202 -20952319 + AluSx SINE Alu 1 312 0 807 280 112 21 chr15 80428202 80429218 -20951303 - L1ME4a LINE L1 -582 5539 4409 522 199 352 0 chr15 80429485 80429701 -20950820 + L1ME4a LINE L1 5527 5818 -303 2177 119 0 10 chr15 80429701 80430013 -20950508 - AluSx SINE Alu -3 309 1 282 268 7 14 chr15 80430100 80430242 -20950279 + (TA)n Simple_repeat Simple_repeat 2 142 0 236 192 77 0 chr15 80430251 80430303 -20950218 + L1ME4a LINE L1 5994 6049 -72 23 33 0 0 chr15 80430324 80430354 -20950167 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr15 80430712 80430744 -20949777 + AT_rich Low_complexity Low_complexity 1 32 0 237 216 0 20 chr15 80430783 80430834 -20949687 - L2 LINE L2 0 3313 3264 2169 125 0 0 chr15 80430842 80431139 -20949382 - AluSx SINE Alu -13 299 3 2087 105 0 87 chr15 80431430 80431616 -20948905 - AluSx SINE Alu -9 303 157 2171 86 29 4 chr15 80431616 80431896 -20948625 - AluSx SINE Alu -25 287 1 2087 105 0 87 chr15 80431896 80432041 -20948480 - AluSx SINE Alu -155 157 1 1385 201 117 0 chr15 80432210 80432483 -20948038 + AluSx SINE Alu 2 306 -6 23 0 0 0 chr15 80432688 80432711 -20947810 + AT_rich Low_complexity Low_complexity 1 23 0 474 184 0 37 chr15 80432874 80432983 -20947538 + MIR SINE MIR 47 151 -111 1238 48 0 0 chr15 80432992 80433137 -20947384 + AluSq SINE Alu 153 297 -16 1003 62 0 0 chr15 80434830 80434959 -20945562 - L1MA5 LINE L1 0 6300 6172 2137 125 0 10 chr15 80434997 80435293 -20945228 + AluSx SINE Alu 1 293 -19 435 285 155 26 chr15 80435442 80435635 -20944886 - MIR SINE MIR -16 246 29 355 276 9 9 chr15 80435638 80435754 -20944767 - MER5B DNA MER1_type 0 178 63 232 379 73 11 chr15 80435832 80436104 -20944417 + L3 LINE CR1 531 819 -758 248 172 242 20 chr15 80436631 80436730 -20943791 - L1ME3 LINE L1 -16 6146 6026 * 1044 195 31 9 chr15 80436702 80436928 -20943593 - L1MC3 LINE L1 -63 7722 7492 587 142 71 0 chr15 80436928 80437041 -20943480 - L1ME3 LINE L1 -802 5440 5320 228 171 0 0 chr15 80437042 80437083 -20943438 - L1MB7 LINE L1 -18 6166 6126 2332 86 17 0 chr15 80437100 80437391 -20943130 - AluSx SINE Alu -16 296 1 3924 151 43 52 chr15 80437391 80437481 -20943040 - L1MB7 LINE L1 -44 6140 6051 2235 127 0 0 chr15 80437481 80437780 -20942741 - AluSx SINE Alu -13 299 1 3924 151 43 52 chr15 80437780 80438032 -20942489 - L1MB7 LINE L1 -133 6051 5798 1745 176 10 7 chr15 80438032 80438328 -20942193 - AluJb SINE Alu -15 297 1 3924 151 43 52 chr15 80438328 80438773 -20941748 - L1MB7 LINE L1 -386 5798 5359 2083 127 28 0 chr15 80438773 80439064 -20941457 - AluSx SINE Alu -13 299 1 1206 227 26 0 chr15 80439066 80439335 -20941186 - L1MB7 LINE L1 -1028 5118 4843 2499 69 23 0 chr15 80439879 80440184 -20940337 - AluSp SINE Alu -1 312 1 247 169 77 0 chr15 80441813 80441878 -20938643 - MIR SINE MIR -114 148 79 2112 87 38 10 chr15 80442165 80442453 -20938068 - AluSq SINE Alu -17 296 1 684 181 84 24 chr15 80443689 80443732 -20936789 - MER51C LTR ERV1 -27 613 574 2309 103 0 10 chr15 80443732 80444042 -20936479 + AluSx SINE Alu 1 307 -5 684 181 84 24 chr15 80444042 80444164 -20936357 - MER51C LTR ERV1 -66 574 438 1549 106 29 0 chr15 80444375 80444583 -20935938 + AluSq SINE Alu 1 214 -99 707 278 44 35 chr15 80444615 80444715 -20935806 + L1M4 LINE L1 4638 4736 -1410 1624 222 41 84 chr15 80444715 80445261 -20935260 - LTR9 LTR ERV1 0 612 97 2572 47 3 0 chr15 80445261 80445559 -20934962 + AluY SINE Alu 1 299 -12 1624 222 41 84 chr15 80445559 80445652 -20934869 - LTR9 LTR ERV1 -515 97 1 707 278 44 35 chr15 80445652 80445889 -20934632 + L1M4 LINE L1 4736 4978 -1168 24 32 0 0 chr15 80445924 80445955 -20934566 + AT_rich Low_complexity Low_complexity 1 31 0 303 96 0 0 chr15 80445967 80446019 -20934502 + (T)n Simple_repeat Simple_repeat 1 52 0 1346 91 0 0 chr15 80446019 80446184 -20934337 - AluSq SINE Alu -148 165 1 694 267 177 53 chr15 80446366 80446799 -20933722 - HAL1 LINE L1 -616 1891 1513 3415 124 50 68 chr15 80446799 80447446 -20933075 + MER41B LTR ERV1 1 635 0 183 80 0 0 chr15 80447452 80447477 -20933044 + (TG)n Simple_repeat Simple_repeat 2 26 0 694 267 177 53 chr15 80447477 80447865 -20932656 - HAL1 LINE L1 -998 1509 960 1903 154 3 23 chr15 80448045 80448179 -20932342 + AluJo SINE Alu 1 136 -176 2291 113 0 16 chr15 80448179 80448488 -20932033 + AluSx SINE Alu 1 304 -8 2703 38 0 6 chr15 80448488 80448801 -20931720 + AluY SINE Alu 1 311 0 1903 154 3 23 chr15 80448801 80448971 -20931550 + AluJo SINE Alu 134 300 -12 2169 105 14 7 chr15 80449578 80449873 -20930648 + AluSx SINE Alu 1 297 -15 1750 155 13 43 chr15 80449883 80450186 -20930335 + AluJo SINE Alu 1 294 -18 2441 74 0 3 chr15 80450413 80450711 -20929810 + AluY SINE Alu 1 297 -14 2232 110 10 3 chr15 80451336 80451645 -20928876 + AluSp SINE Alu 2 312 -1 2347 86 0 13 chr15 80451829 80452132 -20928389 + AluY SINE Alu 1 299 -12 1811 194 24 22 chr15 80452448 80452819 -20927702 - MLT1A2 LTR MaLR -2 372 1 346 305 57 21 chr15 80452898 80453039 -20927482 - MIR SINE MIR -116 146 1 306 300 111 21 chr15 80453318 80453561 -20926960 + L1ME LINE L1 5458 5722 -399 2296 98 0 7 chr15 80453812 80454109 -20926412 - AluSp SINE Alu -18 295 1 2213 120 0 3 chr15 80454109 80454410 -20926111 - AluSx SINE Alu -12 300 1 2387 94 3 0 chr15 80454420 80454727 -20925794 - AluSp SINE Alu -5 308 1 246 226 0 0 chr15 80454733 80454786 -20925735 - L1ME LINE L1 -297 5824 5772 2325 79 10 7 chr15 80454798 80455102 -20925419 - AluSx SINE Alu -7 305 1 1038 103 0 7 chr15 80455102 80455238 -20925283 - AluSq/x SINE Alu -178 135 1 460 135 0 0 chr15 80455983 80456057 -20924464 + AluS SINE Alu 232 305 -7 3472 154 47 16 chr15 80456057 80456669 -20923852 + L1MCa LINE L1 90 720 -5706 930 115 8 0 chr15 80456990 80457120 -20923401 + FLAM_C SINE Alu 1 131 -12 270 48 24 0 chr15 80457998 80458040 -20922481 - AluSc SINE Alu -6 293 251 231 190 0 0 chr15 80458668 80458726 -20921795 + (CCA)n Simple_repeat Simple_repeat 2 59 0 635 71 0 0 chr15 80461488 80461572 -20918949 - AluSg/x SINE Alu -9 301 218 2131 78 4 4 chr15 80461572 80461840 -20918681 - AluY SINE Alu -43 268 1 2215 111 10 3 chr15 80461840 80462137 -20918384 - AluSg SINE Alu -11 299 1 25 31 0 0 chr15 80462462 80462494 -20918027 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr15 80462724 80462745 -20917776 + AT_rich Low_complexity Low_complexity 1 21 0 2328 81 7 7 chr15 80462927 80463225 -20917296 - AluSc SINE Alu -11 298 1 2349 159 95 19 chr15 80464700 80465165 -20915356 - MLT1D LTR MaLR 0 505 6 224 238 219 19 chr15 80465572 80465677 -20914844 + L2 LINE L2 3183 3308 -5 672 231 8 0 chr15 80466779 80466909 -20913612 + FLAM_C SINE Alu 1 131 -2 807 310 131 50 chr15 80467420 80468278 -20912243 + L1MC/D LINE L1 2438 3454 -2692 1387 154 124 0 chr15 80468278 80468537 -20911984 - AluJb SINE Alu -21 291 1 807 310 131 50 chr15 80468537 80468876 -20911645 + L1MC/D LINE L1 3454 3764 -2382 356 231 58 0 chr15 80468898 80469019 -20911502 - L1ME4a LINE L1 -1 6120 5993 412 316 29 15 chr15 80469030 80469236 -20911285 + L1MC/D LINE L1 3769 3977 -2169 235 299 111 0 chr15 80469574 80469691 -20910830 + L1MC/D LINE L1 5770 5899 -1909 1761 102 64 67 chr15 80470094 80470407 -20910114 - AluSx SINE Alu 0 312 1 816 223 0 0 chr15 80470698 80470855 -20909666 - FRAM SINE Alu -21 155 1 1913 121 10 13 chr15 80470954 80471259 -20909262 + AluSx SINE Alu 2 305 -7 515 202 65 16 chr15 80471517 80471641 -20908880 + L1ME4a LINE L1 5490 5619 -502 677 280 37 80 chr15 80471651 80472026 -20908495 - MLT1I LTR MaLR -13 396 38 287 280 61 15 chr15 80472046 80472178 -20908343 + L1ME4a LINE L1 5615 5752 -369 354 269 76 27 chr15 80472197 80472420 -20908101 + L1ME4a LINE L1 5813 6046 -75 450 94 0 0 chr15 80473002 80473066 -20907455 + (CA)n Simple_repeat Simple_repeat 1 64 0 239 228 174 11 chr15 80474346 80474438 -20906083 + MIR SINE MIR 41 147 -61 371 150 0 17 chr15 80476762 80476822 -20903699 - L2 LINE L2 -3 3310 3252 246 175 88 0 chr15 80478510 80478567 -20901954 - MIR SINE MIR -115 147 86 230 403 16 0 chr15 80479182 80479306 -20901215 - MIR SINE MIR -50 212 87 666 159 35 0 chr15 80479442 80479555 -20900966 + FLAM_A SINE Alu 12 128 -14 22 35 0 0 chr15 80479558 80479587 -20900934 + AT_rich Low_complexity Low_complexity 1 29 0 2127 118 0 3 chr15 80481904 80482210 -20898311 + AluSx SINE Alu 1 305 -7 2275 70 30 0 chr15 80482836 80483134 -20897387 + AluSc SINE Alu 1 307 -2 1634 152 14 21 chr15 80484119 80484429 -20896092 + AluJo SINE Alu 5 312 0 411 149 14 40 chr15 80484720 80484794 -20895727 + MIR SINE MIR 77 148 -60 1839 197 22 22 chr15 80484817 80485188 -20895333 + MLT1A2 LTR MaLR 4 374 0 2255 105 0 0 chr15 80485207 80485513 -20895008 - AluSx SINE Alu -6 306 1 499 309 100 42 chr15 80485723 80486034 -20894487 - L1M4 LINE L1 -1530 4616 4288 1747 167 0 22 chr15 80486067 80486378 -20894143 - AluJb SINE Alu -8 304 1 285 285 19 6 chr15 80486457 80486615 -20893906 + (CA)n Simple_repeat Simple_repeat 1 160 0 192 97 0 0 chr15 80487098 80487129 -20893392 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2117 85 41 0 chr15 80487749 80488042 -20892479 + AluSq SINE Alu 1 305 -8 750 257 26 9 chr15 80488076 80488302 -20892219 + L1MC5 LINE L1 7701 7930 -31 348 287 132 0 chr15 80488309 80488438 -20892083 + L1ME4a LINE L1 5285 5430 -734 2012 123 0 0 chr15 80488438 80488723 -20891798 + AluSx SINE Alu 1 285 -27 566 63 13 0 chr15 80488733 80488812 -20891709 + (GA)n Simple_repeat Simple_repeat 1 80 0 307 95 0 0 chr15 80488812 80488854 -20891667 + (GAAAA)n Simple_repeat Simple_repeat 3 44 0 280 280 104 31 chr15 80488869 80489232 -20891289 + L1ME4a LINE L1 5480 5869 -252 388 259 67 7 chr15 80489254 80489389 -20891132 + L1ME4a LINE L1 5975 6117 -4 1749 109 9 106 chr15 80489529 80489860 -20890661 + AluSx SINE Alu 1 299 -13 647 129 10 0 chr15 80489875 80489976 -20890545 - AluSq/x SINE Alu -180 133 32 410 174 184 10 chr15 80490250 80490348 -20890173 + FLAM_C SINE Alu 13 127 -16 295 267 141 10 chr15 80492490 80492696 -20887825 + L1MC5 LINE L1 7709 8041 -1 204 245 157 39 chr15 80493232 80493334 -20887187 + L2 LINE L2 3158 3271 -1 6995 78 9 1 chr15 80493554 80494439 -20886082 + THE1B-int LTR MaLR 677 1568 -12 2224 142 31 19 chr15 80494446 80494805 -20885716 + THE1B LTR MaLR 2 364 0 322 306 139 12 chr15 80494845 80495018 -20885503 + L1ME LINE L1 4768 4962 -1184 407 328 53 53 chr15 80495474 80495813 -20884708 + L1ME LINE L1 5413 5743 -378 1427 139 19 4 chr15 80495994 80496252 -20884269 - L1P LINE L1 -755 5391 5130 782 87 0 56 chr15 80496243 80496369 -20884152 + L1PA13 LINE L1 5914 6032 -131 * 279 0 0 0 chr15 80496421 80496452 -20884069 + (TA)n Simple_repeat Simple_repeat 1 31 0 2083 117 3 10 chr15 80496452 80496759 -20883762 - AluSx SINE Alu -7 305 1 1557 196 62 3 chr15 80496842 80497178 -20883343 + MER66A LTR ERV1 123 478 0 457 295 65 41 chr15 80497260 80497357 -20883164 - L1ME4a LINE L1 -201 5920 5827 2213 110 3 0 chr15 80497357 80497667 -20882854 - AluSx SINE Alu -1 311 1 457 295 65 41 chr15 80497667 80497908 -20882613 - L1ME4a LINE L1 -294 5827 5574 251 324 65 7 chr15 80498137 80498276 -20882245 + MLT1L LTR MaLR 116 262 -353 489 293 85 41 chr15 80498285 80498531 -20881990 + MLT1J LTR MaLR 236 492 -19 1147 298 121 31 chr15 80500730 80501415 -20879106 + ERVL LTR ERVL 3890 4636 -1128 483 330 71 13 chr15 80501452 80501676 -20878845 + ERVL LTR ERVL 4776 5012 -752 675 252 100 33 chr15 80504019 80504229 -20876292 - LTR33 LTR ERVL -297 224 1 305 343 105 14 chr15 80504236 80504379 -20876142 - L2 LINE L2 -1 3271 3116 522 296 32 83 chr15 80504945 80505069 -20875452 - MIR SINE MIR -21 241 135 2139 113 3 0 chr15 80505069 80505378 -20875143 - AluSx SINE Alu -2 310 1 522 296 32 83 chr15 80505378 80505506 -20875015 - MIR SINE MIR -127 135 2 385 282 0 0 chr15 80506242 80506327 -20874194 - MIR3 SINE MIR -54 154 70 572 250 63 65 chr15 80506406 80506547 -20873974 - L1ME LINE L1 -4891 1189 1049 1781 158 3 0 chr15 80506547 80506831 -20873690 - AluJb SINE Alu -21 291 7 572 250 63 65 chr15 80506831 80507133 -20873388 - L1ME LINE L1 -5031 1049 750 1803 156 0 7 chr15 80507137 80507438 -20873083 + AluJb SINE Alu 14 312 0 1981 137 10 16 chr15 80507443 80507756 -20872765 - Tigger1 DNA MER2_type -139 2279 1969 579 234 5 68 chr15 80507764 80507986 -20872535 + L1ME3A LINE L1 5744 5951 -219 1065 181 31 44 chr15 80508004 80508231 -20872290 + MER58A DNA MER1_type 1 224 0 279 173 19 0 chr15 80509710 80509762 -20870759 + L3 LINE CR1 1524 1576 -1 1818 155 10 0 chr15 80511935 80512238 -20868283 + AluSx SINE Alu 1 306 -6 208 192 329 14 chr15 80513139 80513212 -20867309 + MIR3 SINE MIR 84 179 -29 842 195 122 66 chr15 80513987 80514362 -20866159 + L1ME LINE L1 5428 5818 -303 2279 92 0 0 chr15 80515195 80515498 -20865023 - AluSg SINE Alu -2 308 6 1408 174 17 31 chr15 80515498 80515791 -20864730 - AluJo SINE Alu -11 301 13 2183 45 0 0 chr15 80516317 80516561 -20863960 + AluY SINE Alu 56 299 -12 207 281 0 0 chr15 80516661 80516725 -20863796 + A-rich Low_complexity Low_complexity 1 64 0 327 354 21 14 chr15 80517646 80517790 -20862731 + MER5A DNA MER1_type 17 161 -28 249 329 51 0 chr15 80518850 80518929 -20861592 - MIR SINE MIR -126 136 54 2426 96 0 0 chr15 80518934 80519235 -20861286 - AluSg1 SINE Alu -7 302 2 2193 222 88 15 chr15 80519317 80519862 -20860659 + MLT1E LTR MaLR 1 585 -8 906 282 99 87 chr15 80521437 80521613 -20858908 + L1M4 LINE L1 4191 4363 -1783 2040 128 3 10 chr15 80521613 80521909 -20858612 + AluSq SINE Alu 1 294 -19 906 282 99 87 chr15 80521909 80522021 -20858500 + L1M4 LINE L1 4363 4472 -1674 706 229 64 13 chr15 80522021 80522178 -20858343 + FAM SINE Alu 1 165 -10 906 282 99 87 chr15 80522178 80522522 -20857999 + L1M4 LINE L1 4472 4832 -1314 2372 101 0 0 chr15 80524070 80524368 -20856153 - AluSg SINE Alu -12 298 1 406 340 43 11 chr15 80524919 80525104 -20855417 - L2 LINE L2 -568 2746 2556 390 195 39 0 chr15 80525138 80525203 -20855318 + L1MCa LINE L1 21 91 -6335 2195 84 0 21 chr15 80525203 80525487 -20855034 + AluSp SINE Alu 1 278 -35 390 195 39 0 chr15 80525487 80525498 -20855023 + L1MCa LINE L1 91 100 -6326 956 140 0 7 chr15 80525584 80525727 -20854794 + AluSq/x SINE Alu 1 142 -171 2154 133 7 0 chr15 80525727 80526036 -20854485 + AluSx SINE Alu 1 311 -1 10852 152 85 30 chr15 80526036 80528306 -20852215 + L1MCa LINE L1 108 2539 -3887 2490 80 0 3 chr15 80528306 80528606 -20851915 - AluSp SINE Alu -14 299 1 10852 152 85 30 chr15 80528606 80528923 -20851598 + L1MCa LINE L1 2539 2837 -3589 1890 164 6 6 chr15 80528945 80529257 -20851264 + AluSx SINE Alu 1 312 0 716 170 35 0 chr15 80529265 80529436 -20851085 + GA-rich Low_complexity Low_complexity 1 177 0 780 224 37 21 chr15 80529453 80529694 -20850827 + L1MCa LINE L1 2864 3108 -3318 2058 136 16 89 chr15 80529695 80530189 -20850332 + L1MB8 LINE L1 5718 6175 -3 1233 177 104 19 chr15 80530190 80530597 -20849924 + LTR54 LTR ERV1 14 400 -3 22 0 0 0 chr15 80530611 80530633 -20849888 + AT_rich Low_complexity Low_complexity 1 22 0 293 309 153 15 chr15 80530633 80531020 -20849501 - L2 LINE L2 -814 2500 1994 2650 157 37 31 chr15 80531077 80531619 -20848902 - LTR10A LTR ERV1 -64 545 1 248 115 19 39 chr15 80531641 80531693 -20848828 - LTR10B LTR ERV1 -496 51 1 2448 107 7 0 chr15 80531725 80532033 -20848488 + AluSx SINE Alu 1 310 -2 2692 131 30 0 chr15 80532113 80532541 -20847980 - MER84 LTR ERVI 0 507 67 1994 100 42 42 chr15 80532804 80533114 -20847407 - AluSg SINE Alu 0 310 1 246 235 53 70 chr15 80533116 80533299 -20847222 + MER112 DNA MER1_type 6 158 -102 2301 99 3 0 chr15 80533299 80533601 -20846920 - AluSc SINE Alu -6 303 1 246 235 53 70 chr15 80533601 80533667 -20846854 + MER112 DNA MER1_type 158 224 -36 2456 94 0 0 chr15 80533685 80533994 -20846527 - AluY SINE Alu -2 309 1 764 297 179 24 chr15 80534246 80534483 -20846038 - L2 LINE L2 0 3272 3073 2275 132 0 0 chr15 80534483 80534786 -20845735 + AluSx SINE Alu 1 303 -9 764 297 179 24 chr15 80534786 80535239 -20845282 - L2 LINE L2 -199 3073 2475 553 316 49 16 chr15 80535358 80535523 -20844998 + MIR SINE MIR 8 185 -77 2252 111 0 10 chr15 80535523 80535820 -20844701 + AluSx SINE Alu 4 297 -15 553 316 49 16 chr15 80535820 80535901 -20844620 + MIR SINE MIR 185 262 0 2395 83 0 3 chr15 80536360 80536662 -20843859 - AluSg SINE Alu -9 301 1 553 307 131 47 chr15 80536769 80537177 -20843344 - L2 LINE L2 -224 3048 2606 217 183 33 83 chr15 80537513 80537573 -20842948 + L2 LINE L2 3139 3195 -77 435 230 0 82 chr15 80537637 80537772 -20842749 - MLT1K LTR MaLR -307 281 158 758 176 45 34 chr15 80538084 80538260 -20842261 - MER5B DNA MER1_type 0 178 1 346 359 34 21 chr15 80538643 80538880 -20841641 - L2 LINE L2 -823 2491 2252 236 159 0 45 chr15 80539174 80539218 -20841303 - L2 LINE L2 -4 3309 3268 487 96 0 12 chr15 80540143 80540226 -20840295 - L1MB3 LINE L1 0 6183 6102 319 291 51 0 chr15 80540385 80540464 -20840057 + MIR3 SINE MIR 78 160 -48 1741 103 0 4 chr15 80540927 80541159 -20839362 + AluSq SINE Alu 1 231 -82 435 141 0 0 chr15 80541230 80541301 -20839220 + Alu SINE Alu 225 295 -15 180 0 0 0 chr15 80541720 80541740 -20838781 + (A)n Simple_repeat Simple_repeat 1 20 0 2270 97 0 10 chr15 80541740 80542067 -20838454 + AluY SINE Alu 1 311 0 2290 114 0 19 chr15 80542396 80542713 -20837808 + AluSx SINE Alu 1 311 -1 228 235 20 0 chr15 80543210 80543261 -20837260 - L3 LINE CR1 -338 1239 1188 1558 178 0 66 chr15 80543426 80543730 -20836791 - AluJo SINE Alu -28 284 1 278 312 112 42 chr15 80543735 80544020 -20836501 - L3 LINE CR1 -375 1202 898 856 289 234 42 chr15 80544432 80546626 -20833895 + L2 LINE L2 594 3238 -75 590 123 110 58 chr15 80546627 80546752 -20833769 + Charlie5 DNA MER1_type 2423 2559 -26 1602 155 84 14 chr15 80546752 80547036 -20833485 - AluSx SINE Alu -8 304 1 590 123 110 58 chr15 80547036 80547065 -20833456 + Charlie5 DNA MER1_type 2559 2585 0 2303 93 0 20 chr15 80548273 80548573 -20831948 + AluSx SINE Alu 1 294 -18 363 323 131 48 chr15 80548851 80549492 -20831029 + L2 LINE L2 1805 2498 -816 2128 131 0 10 chr15 80549568 80549873 -20830648 + AluSx SINE Alu 1 302 -10 483 305 62 35 chr15 80549873 80549999 -20830522 + MIR SINE MIR 25 161 -101 3334 55 0 2 chr15 80549999 80550414 -20830107 + L1PA5 LINE L1 5741 6154 0 483 305 62 35 chr15 80550414 80550513 -20830008 + MIR SINE MIR 161 256 -6 1305 136 43 81 chr15 80550553 80550645 -20829876 + AluJo SINE Alu 48 142 -170 2222 82 35 0 chr15 80550645 80550927 -20829594 + AluY SINE Alu 1 292 -19 1305 136 43 81 chr15 80550927 80551092 -20829429 + AluJo SINE Alu 142 295 -17 2286 118 3 0 chr15 80551345 80551651 -20828870 + AluSx SINE Alu 1 307 -5 651 234 106 37 chr15 80552009 80552197 -20828324 - MIR SINE MIR -59 203 3 472 302 153 48 chr15 80552214 80552462 -20828059 + L2 LINE L2 2950 3223 -49 290 317 203 0 chr15 80552669 80552792 -20827729 + L2 LINE L2 3123 3270 -2 354 275 234 18 chr15 80553313 80553480 -20827041 - MIR SINE MIR -8 254 52 314 336 0 31 chr15 80553578 80553706 -20826815 - L3 LINE CR1 -190 1387 1264 22 0 0 0 chr15 80554221 80554243 -20826278 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr15 80554924 80554949 -20825572 + AT_rich Low_complexity Low_complexity 1 25 0 377 246 80 90 chr15 80555529 80555817 -20824704 + L1ME4a LINE L1 5835 6119 -2 2400 90 0 0 chr15 80555872 80556173 -20824348 + AluY SINE Alu 1 301 -10 917 208 116 42 chr15 80556513 80556880 -20823641 + L2 LINE L2 2756 3164 -149 271 329 36 36 chr15 80557185 80557322 -20823199 + L2 LINE L2 3161 3297 -16 558 288 156 37 chr15 80557970 80558175 -20822346 - L2 LINE L2 0 3313 3134 1864 125 0 52 chr15 80558175 80558293 -20822228 + AluSx SINE Alu 30 153 -159 2619 59 0 0 chr15 80558293 80558597 -20821924 + AluY SINE Alu 1 304 -7 1864 125 0 52 chr15 80558597 80558765 -20821756 + AluSx SINE Alu 153 301 -11 558 288 156 37 chr15 80558765 80558962 -20821559 - L2 LINE L2 -179 3134 2863 1186 259 239 48 chr15 80559003 80559877 -20820644 - L2 LINE L2 -563 2751 1711 324 206 59 0 chr15 80559881 80559906 -20820615 + MER3 DNA MER1_type 19 47 -162 961 146 146 0 chr15 80559906 80560084 -20820437 - MER3 DNA MER1_type 0 209 6 310 310 154 34 chr15 80560086 80560444 -20820077 - L2 LINE L2 -1636 1678 1278 381 260 0 0 chr15 80561877 80561954 -20818567 + MIR SINE MIR 73 149 -113 21 0 0 0 chr15 80562608 80562629 -20817892 + GC_rich Low_complexity Low_complexity 1 21 0 210 216 0 0 chr15 80562861 80562898 -20817623 + (CCG)n Simple_repeat Simple_repeat 2 38 0 33 56 0 0 chr15 80562899 80562953 -20817568 + GC_rich Low_complexity Low_complexity 1 54 0 417 216 128 10 chr15 80563200 80563302 -20817219 - MIR3 SINE MIR -21 187 74 2345 66 0 33 chr15 80563775 80564080 -20816441 + AluY SINE Alu 1 295 -16 875 85 7 78 chr15 80564090 80564231 -20816290 + AluSc SINE Alu 121 251 -58 2506 57 17 0 chr15 80564333 80564631 -20815890 + AluY SINE Alu 1 303 -8 2163 134 0 0 chr15 80564639 80564931 -20815590 + AluSx SINE Alu 1 292 -20 925 106 0 0 chr15 80565242 80565355 -20815166 + AluSc SINE Alu 1 113 -196 1765 144 0 19 chr15 80565364 80565628 -20814893 - AluJo SINE Alu -47 265 7 265 284 3 16 chr15 80565817 80565919 -20814602 - MER5A DNA MER1_type -71 107 7 1967 125 0 14 chr15 80566729 80567017 -20813504 + AluSx SINE Alu 2 285 -27 1083 98 0 0 chr15 80567017 80567041 -20813480 + AluSq SINE Alu 2 313 0 353 267 20 33 chr15 80567135 80567269 -20813252 + MER103 DNA DNA 2 135 -31 1852 150 3 0 chr15 80567269 80567563 -20812958 - AluJo SINE Alu -17 295 1 353 267 20 33 chr15 80567563 80567578 -20812943 + MER103 DNA DNA 135 149 -17 562 247 148 6 chr15 80567781 80567943 -20812578 + MIR SINE MIR 4 188 -74 1645 162 3 24 chr15 80568057 80568353 -20812168 + AluJb SINE Alu 1 290 -22 1745 151 36 13 chr15 80569220 80569525 -20810996 + AluJo SINE Alu 1 312 0 707 218 167 18 chr15 80569551 80569826 -20810695 + L1MC5 LINE L1 7610 7925 -36 2147 112 0 10 chr15 80569838 80570150 -20810371 + AluSg SINE Alu 1 309 -1 918 132 0 0 chr15 80570310 80570446 -20810075 - FLAM_C SINE Alu -7 136 1 1117 141 31 5 chr15 80570456 80570647 -20809874 - L1MB5 LINE L1 -60 6114 5919 23 0 0 0 chr15 80570664 80570687 -20809834 + AT_rich Low_complexity Low_complexity 1 23 0 472 197 129 15 chr15 80570805 80570937 -20809584 - L1MC4a LINE L1 -1870 5938 5792 211 293 85 24 chr15 80570946 80571028 -20809493 - L2 LINE L2 -35 3237 3151 825 204 72 0 chr15 80571662 80571829 -20808692 + LTR47A LTR ERVL 274 452 0 191 333 0 0 chr15 80572337 80572409 -20808112 - L2 LINE L2 -1088 2226 2155 250 298 115 19 chr15 80573146 80573250 -20807271 - L2 LINE L2 0 3272 3159 225 119 0 0 chr15 80573613 80573655 -20806866 + (GA)n Simple_repeat Simple_repeat 1 42 0 225 65 0 0 chr15 80573656 80573687 -20806834 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr15 80573860 80573882 -20806639 + AT_rich Low_complexity Low_complexity 1 22 0 896 208 45 0 chr15 80574289 80574491 -20806030 - L1MB7 LINE L1 -23 6161 5951 1094 90 6 6 chr15 80574699 80574855 -20805666 - AluSp SINE Alu -118 195 40 647 126 0 0 chr15 80574855 80574950 -20805571 + AluSp/q SINE Alu 212 306 -7 359 279 205 16 chr15 80575544 80575734 -20804787 + MIR SINE MIR 21 246 -16 217 221 103 29 chr15 80575930 80575998 -20804523 - MIR SINE MIR -109 153 81 1556 119 0 0 chr15 80576028 80576247 -20804274 + AluSx SINE Alu 1 219 -93 480 158 0 0 chr15 80576247 80576323 -20804198 + AluSg/x SINE Alu 188 263 -49 2201 88 3 0 chr15 80576367 80576664 -20803857 + AluSp SINE Alu 1 298 -15 6801 82 23 12 chr15 80577007 80577032 -20803489 + L1MA2 LINE L1 5342 5365 -939 2127 89 14 0 chr15 80577032 80577324 -20803197 + AluSx SINE Alu 1 296 -16 6801 82 23 12 chr15 80577324 80578250 -20802271 + L1MA2 LINE L1 5365 6304 0 33 0 0 0 chr15 80578250 80578283 -20802238 + AT_rich Low_complexity Low_complexity 1 33 0 1965 91 4 7 chr15 80578530 80578833 -20801688 - AluSx SINE Alu 0 313 12 2200 88 14 0 chr15 80578923 80579220 -20801301 - AluSq SINE Alu -12 301 1 222 300 0 0 chr15 80579771 80579821 -20800700 - MIR3 SINE MIR -21 187 138 * 367 316 40 33 chr15 80579813 80579965 -20800556 - L2 LINE L2 -1 3271 3119 1889 139 0 10 chr15 80580109 80580410 -20800111 + AluSx SINE Alu 1 298 -14 290 305 127 92 chr15 80580435 80580750 -20799771 - L2 LINE L2 -10 3262 2937 2255 105 45 63 chr15 80580821 80580970 -20799551 + THE1C LTR MaLR 1 151 -224 2269 89 0 0 chr15 80580970 80581263 -20799258 - AluSc SINE Alu -16 293 1 2255 105 45 63 chr15 80581263 80581495 -20799026 + THE1C LTR MaLR 151 375 0 206 333 50 50 chr15 80581495 80581615 -20798906 - L2 LINE L2 -456 2858 2739 21 36 0 0 chr15 80581671 80581699 -20798822 + AT_rich Low_complexity Low_complexity 1 28 0 1060 311 66 29 chr15 80581702 80582323 -20798198 - L2 LINE L2 -605 2709 2066 228 163 0 0 chr15 80582331 80582374 -20798147 + (TA)n Simple_repeat Simple_repeat 2 44 0 1605 192 59 26 chr15 80582449 80582840 -20797681 + MER74B LTR ERVL 167 570 -52 360 308 102 67 chr15 80582874 80583355 -20797166 - L2 LINE L2 -1223 2091 1594 223 265 73 0 chr15 80583443 80583511 -20797010 + MIR SINE MIR 71 143 -119 3989 131 25 0 chr15 80583640 80584280 -20796241 + L1MB3 LINE L1 5528 6183 0 964 152 0 0 chr15 80584776 80584921 -20795600 - MER46A DNA MER2_type -90 146 2 2193 142 25 6 chr15 80585205 80585564 -20794957 - MER47A DNA MER2_type 0 366 1 217 335 86 60 chr15 80585572 80585824 -20794697 + L2 LINE L2 2201 2464 -850 2132 109 0 10 chr15 80585824 80586136 -20794385 - AluSx SINE Alu -3 309 1 217 335 86 60 chr15 80586136 80586184 -20794337 + L2 LINE L2 2464 2509 -805 2317 60 0 10 chr15 80586280 80586579 -20793942 - AluY SINE Alu -15 296 1 181 133 0 0 chr15 80586727 80586757 -20793764 - L2 LINE L2 -2 3270 3241 1368 182 18 7 chr15 80586784 80587070 -20793451 + AluJo SINE Alu 1 289 -23 198 317 104 110 chr15 80588218 80588275 -20792246 - L2 LINE L2 -2 3270 3214 1580 152 14 4 chr15 80588275 80588551 -20791970 + AluJo SINE Alu 1 279 -33 222 62 0 0 chr15 80588553 80588585 -20791936 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 198 317 104 110 chr15 80588585 80588688 -20791833 - L2 LINE L2 -59 3213 3108 311 316 116 60 chr15 80589065 80589480 -20791041 - L2 LINE L2 -623 2691 2254 2116 78 54 0 chr15 80590660 80590955 -20789566 - AluY SINE Alu 0 311 1 2217 91 17 0 chr15 80591496 80591793 -20788728 + AluSq SINE Alu 1 302 -11 2046 114 17 3 chr15 80591793 80592091 -20788430 + AluSg SINE Alu 1 302 -8 1797 145 17 10 chr15 80592294 80592590 -20787931 + AluJb SINE Alu 1 298 -14 23 0 0 0 chr15 80592701 80592724 -20787797 + AT_rich Low_complexity Low_complexity 1 23 0 291 270 99 27 chr15 80592982 80593093 -20787428 + L2 LINE L2 3187 3305 -8 24 0 0 0 chr15 80594756 80594780 -20785741 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr15 80594971 80594994 -20785527 + AT_rich Low_complexity Low_complexity 1 23 0 2115 104 10 0 chr15 80595004 80595293 -20785228 + AluSx SINE Alu 1 292 -20 1612 159 0 11 chr15 80595672 80595936 -20784585 + AluJo SINE Alu 1 261 -51 1999 132 7 0 chr15 80595972 80596268 -20784253 + AluSq SINE Alu 1 298 -15 226 305 66 32 chr15 80596808 80596946 -20783575 + MIR SINE MIR 51 191 -62 206 238 0 0 chr15 80596994 80597036 -20783485 + L2 LINE L2 3269 3310 -3 1814 132 31 3 chr15 80597269 80597556 -20782965 + AluSx SINE Alu 1 295 -17 31 26 0 0 chr15 80598063 80598101 -20782420 + AT_rich Low_complexity Low_complexity 1 38 0 2204 102 0 0 chr15 80599241 80599545 -20780976 + AluSx SINE Alu 1 304 -8 2189 61 0 11 chr15 80600102 80600433 -20780088 + AluY SINE Alu 6 333 0 2015 98 0 40 chr15 80600462 80600782 -20779739 + AluSq SINE Alu 1 308 0 214 160 0 40 chr15 80600909 80600959 -20779562 + T-rich Low_complexity Low_complexity 1 48 0 5903 63 51 44 chr15 80600959 80601907 -20778614 - SVA Other Other 0 1386 433 5448 68 39 51 chr15 80601919 80602933 -20777588 - SVA Other Other -518 868 5 1697 166 10 10 chr15 80602939 80603234 -20777287 - AluJo SINE Alu -17 295 1 330 0 0 0 chr15 80603258 80603293 -20777228 - Charlie5 DNA MER1_type -2549 63 29 1852 149 14 0 chr15 80604563 80604845 -20775676 - AluSx SINE Alu -20 292 7 2118 125 0 3 chr15 80605635 80605947 -20774574 - AluSx SINE Alu -1 311 1 280 321 67 36 chr15 80606089 80606282 -20774239 + MLT1L LTR MaLR 2 200 -415 1880 117 0 48 chr15 80606539 80606848 -20773673 - AluSg SINE Alu -16 294 1 2372 79 0 3 chr15 80606860 80607165 -20773356 - AluSp SINE Alu -9 304 1 276 344 53 8 chr15 80607331 80607462 -20773059 + MIR3 SINE MIR 26 162 -46 2184 110 0 0 chr15 80607487 80607786 -20772735 - AluSq SINE Alu -14 299 1 265 211 14 0 chr15 80607809 80607880 -20772641 + (TA)n Simple_repeat Simple_repeat 1 72 0 794 138 0 0 chr15 80607897 80608013 -20772508 - FLAM_C SINE Alu -16 117 2 22 35 0 0 chr15 80608147 80608176 -20772345 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr15 80608465 80608496 -20772025 + AT_rich Low_complexity Low_complexity 1 31 0 263 276 82 20 chr15 80608500 80608598 -20771923 - MARNA DNA Mariner -336 250 147 319 329 79 55 chr15 80608646 80608810 -20771711 + MIR3 SINE MIR 38 205 -3 2189 92 3 13 chr15 80609017 80609322 -20771199 - AluSq SINE Alu -11 302 1 2269 79 0 13 chr15 80609688 80609992 -20770529 + AluSg SINE Alu 1 300 -10 21 0 0 0 chr15 80610082 80610103 -20770418 + AT_rich Low_complexity Low_complexity 1 21 0 1838 105 26 49 chr15 80610216 80610520 -20770001 + AluSq SINE Alu 1 297 -16 366 342 7 13 chr15 80610768 80610920 -20769601 - MER5B DNA MER1_type -24 154 4 2181 107 0 3 chr15 80611347 80611645 -20768876 + AluSx SINE Alu 1 297 -15 2099 114 0 0 chr15 80611648 80611946 -20768575 + AluSx SINE Alu 1 298 -14 2097 126 0 0 chr15 80611977 80612271 -20768250 + AluSx SINE Alu 3 296 -16 182 250 0 0 chr15 80612912 80612952 -20767569 - L2 LINE L2 -5 3308 3269 * 512 192 0 110 chr15 80612918 80613064 -20767457 - MIR SINE MIR -5 257 128 212 222 22 0 chr15 80613477 80613522 -20766999 - MIR3 SINE MIR -48 160 115 335 365 39 49 chr15 80614575 80614882 -20765639 - L2 LINE L2 -55 3217 2914 821 291 270 40 chr15 80615907 80617070 -20763451 - L2 LINE L2 -556 2758 1864 1917 99 20 26 chr15 80617070 80617374 -20763147 - AluSx SINE Alu -10 302 1 821 291 270 40 chr15 80617374 80617938 -20762583 - L2 LINE L2 -1450 1864 627 599 152 0 38 chr15 80618416 80618521 -20762000 - FLAM_A SINE Alu -22 120 20 23 0 0 0 chr15 80618864 80618887 -20761634 + AT_rich Low_complexity Low_complexity 1 23 0 1800 152 28 14 chr15 80619122 80619412 -20761109 - AluJo SINE Alu -18 294 1 253 305 147 0 chr15 80619423 80619518 -20761003 + MIR SINE MIR 120 228 -34 2056 104 30 13 chr15 80619808 80620106 -20760415 + AluSx SINE Alu 1 303 -9 39 0 0 0 chr15 80620161 80620200 -20760321 + AT_rich Low_complexity Low_complexity 1 39 0 1738 153 32 14 chr15 80622810 80623092 -20757429 - AluSx SINE Alu -25 287 1 897 147 0 7 chr15 80623092 80623228 -20757293 - AluJo SINE Alu -175 137 3 2025 98 0 29 chr15 80623329 80623606 -20756915 - AluSg SINE Alu -13 297 29 1042 68 0 0 chr15 80623606 80623739 -20756782 + AluY SINE Alu 179 311 0 1594 166 33 19 chr15 80623747 80624018 -20756503 + AluJb SINE Alu 16 290 -22 507 283 76 27 chr15 80624854 80625038 -20755483 - L2 LINE L2 -2 3311 3119 1680 152 52 4 chr15 80625212 80625510 -20755011 + AluSx SINE Alu 1 311 0 353 212 30 40 chr15 80625643 80625742 -20754779 - MIR SINE MIR -19 243 146 1275 218 13 40 chr15 80625792 80626090 -20754431 - AluJo SINE Alu -22 290 1 29 28 0 0 chr15 80626091 80626127 -20754394 + AT_rich Low_complexity Low_complexity 1 36 0 2056 97 42 3 chr15 80626130 80626419 -20754102 + AluSx SINE Alu 1 300 -12 2080 114 7 4 chr15 80626421 80626701 -20753820 + AluSc SINE Alu 1 281 -28 419 274 41 68 chr15 80626947 80627120 -20753401 - L1ME LINE L1 -348 5773 5597 1858 155 0 32 chr15 80627120 80627429 -20753092 - AluJb SINE Alu -13 299 1 419 274 41 68 chr15 80627429 80627622 -20752899 - L1ME LINE L1 -524 5597 5426 1803 149 0 10 chr15 80627622 80627910 -20752611 - AluJb SINE Alu -27 285 1 419 274 41 68 chr15 80627910 80628046 -20752475 - L1ME LINE L1 -695 5426 5288 1473 143 151 4 chr15 80628382 80628641 -20751880 - AluJb SINE Alu -5 297 1 323 647 0 0 chr15 80628810 80628977 -20751544 + AluSg/x SINE Alu 136 302 0 537 152 56 32 chr15 80629336 80629371 -20751150 - L1MB3 LINE L1 -2 6181 6148 2456 67 0 0 chr15 80629371 80629668 -20750853 - AluY SINE Alu -14 297 1 537 152 56 32 chr15 80629668 80629757 -20750764 - L1MB3 LINE L1 -35 6148 6054 702 241 131 29 chr15 80629909 80630117 -20750404 + MER20B DNA MER1_type 56 300 -483 2429 86 3 0 chr15 80630117 80630421 -20750100 - AluSp SINE Alu -8 305 1 702 241 131 29 chr15 80630421 80630486 -20750035 + MER20B DNA MER1_type 300 357 -426 328 219 158 0 chr15 80630487 80630569 -20749952 + MER82 DNA MER2_type 1 95 -558 261 83 0 0 chr15 80630569 80630605 -20749916 + (TG)n Simple_repeat Simple_repeat 2 37 0 2055 114 7 3 chr15 80630671 80630969 -20749552 + AluSq SINE Alu 1 299 -14 323 351 27 14 chr15 80630989 80631137 -20749384 - MIR SINE MIR -111 151 2 630 235 96 6 chr15 80631158 80631324 -20749197 + MER82 DNA MER2_type 444 624 -29 1066 201 114 3 chr15 80631390 80631714 -20748807 + MER20B DNA MER1_type 423 782 -1 360 329 138 16 chr15 80631806 80632378 -20748143 - L1 LINE L1 -2145 4001 3360 373 269 115 7 chr15 80632446 80632732 -20747789 - L1 LINE L1 -2892 3254 2938 1857 139 24 7 chr15 80633190 80633484 -20747037 + AluSx SINE Alu 1 299 -13 1540 186 41 10 chr15 80634193 80634580 -20745941 + L1PB2 LINE L1 4961 5359 -787 3071 35 0 0 chr15 80634584 80634960 -20745561 - L1PA5 LINE L1 -456 5698 5323 3385 65 0 0 chr15 80634962 80635390 -20745131 + L1PA5 LINE L1 5726 6153 -1 4378 94 9 22 chr15 80635390 80635641 -20744880 + L1PB2 LINE L1 5356 5609 -542 2158 128 0 0 chr15 80635641 80635937 -20744584 + AluSg SINE Alu 1 296 -14 4378 94 9 22 chr15 80635937 80636377 -20744144 + L1PB2 LINE L1 5609 6038 -113 1346 151 10 0 chr15 80636383 80636589 -20743932 + AluSg/x SINE Alu 94 301 -11 373 254 151 68 chr15 80636621 80636679 -20743842 + L1ME3A LINE L1 1582 1634 -4762 667 180 147 33 chr15 80636679 80636829 -20743692 + FAM SINE Alu 1 167 -8 373 254 151 68 chr15 80636829 80637121 -20743400 + L1ME3A LINE L1 1634 1961 -4435 35 31 0 31 chr15 80637158 80637182 -20743339 + AT_rich Low_complexity Low_complexity 1 24 -38 1715 158 24 14 chr15 80637182 80637474 -20743047 - AluJo SINE Alu -13 299 5 35 31 0 31 chr15 80637474 80637513 -20743008 + AT_rich Low_complexity Low_complexity 24 62 0 776 136 7 29 chr15 80637580 80637720 -20742801 + AluJb SINE Alu 175 311 -1 817 244 105 87 chr15 80637738 80637941 -20742580 + L1MEc LINE L1 2207 2405 -3810 1820 156 37 0 chr15 80637941 80638236 -20742285 + AluSx SINE Alu 1 306 -6 817 244 105 87 chr15 80638236 80638612 -20741909 + L1MEc LINE L1 2405 2773 -3442 2167 138 0 0 chr15 80638612 80638923 -20741598 + AluSx SINE Alu 1 311 -1 817 244 105 87 chr15 80638923 80639410 -20741111 + L1MEc LINE L1 2773 3293 -2922 545 255 97 15 chr15 80639432 80639691 -20740830 + L1MEc LINE L1 3676 3955 -2260 440 257 55 5 chr15 80639702 80639904 -20740617 + L1ME3A LINE L1 2106 2317 -4079 2163 205 58 43 chr15 80639912 80640555 -20739966 + L1ME3A LINE L1 5460 6111 -128 440 221 0 29 chr15 80640890 80640994 -20739527 + FLAM_C SINE Alu 43 143 0 5744 178 35 50 chr15 80641032 80641401 -20739120 + L1PA16 LINE L1 3950 4323 -1912 2304 90 0 7 chr15 80641401 80641701 -20738820 + AluSq SINE Alu 1 298 -15 5744 178 35 50 chr15 80641701 80643091 -20737430 + L1PA16 LINE L1 4323 5732 -503 2005 151 0 16 chr15 80643091 80643395 -20737126 + AluSx SINE Alu 1 299 -13 5744 178 35 50 chr15 80643395 80643585 -20736936 + L1PA16 LINE L1 5732 5923 -312 360 43 0 0 chr15 80643585 80643631 -20736890 + (CA)n Simple_repeat Simple_repeat 2 47 0 5744 178 35 50 chr15 80643631 80643999 -20736522 + L1PA16 LINE L1 5923 6226 -9 2155 133 10 0 chr15 80644021 80644322 -20736199 + AluSx SINE Alu 1 304 -8 1784 165 57 7 chr15 80644485 80644782 -20735739 + AluJb SINE Alu 1 312 0 251 292 0 14 chr15 80644793 80644865 -20735656 + MIR SINE MIR 81 151 -111 2065 102 13 39 chr15 80644969 80645274 -20735247 - AluSx SINE Alu -15 297 1 2418 238 94 47 chr15 80645887 80645949 -20734572 - L2 LINE L2 0 3313 3255 363 44 0 0 chr15 80645949 80645994 -20734527 + (TA)n Simple_repeat Simple_repeat 1 45 0 2418 238 94 47 chr15 80645994 80646012 -20734509 - L2 LINE L2 -58 3255 3239 2075 116 0 0 chr15 80646012 80646288 -20734233 - AluSx SINE Alu -36 276 1 2418 238 94 47 chr15 80646288 80646462 -20734059 - L2 LINE L2 -74 3239 3075 1783 179 7 13 chr15 80646462 80646770 -20733751 + AluJb SINE Alu 1 306 -6 2418 238 94 47 chr15 80646770 80647477 -20733044 - L2 LINE L2 -238 3075 2301 24 0 0 0 chr15 80648688 80648712 -20731809 + AT_rich Low_complexity Low_complexity 1 24 0 1939 109 3 11 chr15 80648818 80649130 -20731391 + AluSq SINE Alu 1 310 0 882 148 0 7 chr15 80649718 80649853 -20730668 + AluJo SINE Alu 1 134 -178 180 309 74 49 chr15 80650540 80650621 -20729900 - L2 LINE L2 -278 3035 2953 540 293 179 53 chr15 80650629 80651066 -20729455 - L2 LINE L2 -1 3312 2821 289 324 23 0 chr15 80651069 80651193 -20729328 + MLT1J1 LTR MaLR 16 141 -268 245 177 38 38 chr15 80651344 80651423 -20729098 + MLT1J1 LTR MaLR 346 424 -22 1843 272 38 33 chr15 80651463 80652076 -20728445 - L2 LINE L2 -515 2799 2184 4286 156 89 1 chr15 80652234 80653029 -20727492 - MER6 DNA MER2_type 0 865 1 842 60 0 9 chr15 80653194 80653310 -20727211 - L1PA13 LINE L1 -2 6161 6047 232 277 0 0 chr15 80653428 80653475 -20727046 + L2 LINE L2 3255 3301 -12 315 0 0 0 chr15 80654037 80654072 -20726449 + (TG)n Simple_repeat Simple_repeat 2 36 0 310 232 107 60 chr15 80654087 80654246 -20726275 - MIR SINE MIR -61 201 38 464 207 52 67 chr15 80654359 80654552 -20725969 + L1ME3A LINE L1 5730 5919 -251 51 58 0 0 chr15 80655046 80655132 -20725389 + AT_rich Low_complexity Low_complexity 1 86 0 28 71 0 0 chr15 80655208 80655264 -20725257 + AT_rich Low_complexity Low_complexity 1 56 0 489 201 34 78 chr15 80655361 80655484 -20725037 - L1MC4 LINE L1 -15 8027 7913 369 0 0 0 chr15 80655484 80655525 -20724996 + (CA)n Simple_repeat Simple_repeat 2 42 0 489 201 34 78 chr15 80655525 80655580 -20724941 - L1MC4 LINE L1 -129 7913 7857 1788 157 39 0 chr15 80655580 80655866 -20724655 - AluSx SINE Alu -13 299 3 840 129 0 8 chr15 80655866 80655990 -20724531 - AluJb SINE Alu -179 133 11 380 228 50 44 chr15 80656015 80656200 -20724321 - L1MC4 LINE L1 -95 7713 7559 2227 69 16 33 chr15 80656252 80656555 -20723966 - AluY SINE Alu -13 298 1 285 324 27 0 chr15 80657073 80657147 -20723374 + MER5A DNA MER1_type 29 104 -85 874 201 10 81 chr15 80657334 80657543 -20722978 + MIR SINE MIR 68 261 -1 275 241 7 131 chr15 80657622 80657677 -20722844 + MIR SINE MIR 104 164 -98 2089 131 7 0 chr15 80657677 80657982 -20722539 + AluSx SINE Alu 1 307 -5 275 241 7 131 chr15 80657982 80658071 -20722450 + MIR SINE MIR 164 230 -32 2532 66 0 0 chr15 80658177 80658480 -20722041 - AluSc SINE Alu -6 303 1 354 348 82 13 chr15 80658504 80658662 -20721859 + MIR3 SINE MIR 19 187 -21 336 200 9 122 chr15 80658823 80658885 -20721636 + L1ME3A LINE L1 6069 6114 -56 1982 140 3 0 chr15 80658885 80659177 -20721344 - AluSx SINE Alu -19 293 1 336 200 9 122 chr15 80659177 80659229 -20721292 + L1ME3A LINE L1 6114 6170 0 214 344 0 62 chr15 80659443 80659539 -20720982 + MIR SINE MIR 49 138 -70 1492 141 133 0 chr15 80659569 80659825 -20720696 - AluSx SINE Alu -22 290 1 24 53 0 0 chr15 80659881 80659919 -20720602 + AT_rich Low_complexity Low_complexity 1 38 0 1311 171 67 0 chr15 80660259 80660276 -20720245 - AluJb SINE Alu -14 298 284 504 105 0 0 chr15 80660276 80660352 -20720169 + (TCCA)n Simple_repeat Simple_repeat 3 78 0 1311 171 67 0 chr15 80660352 80660574 -20719947 - AluJb SINE Alu -28 284 43 222 164 194 30 chr15 80660744 80660811 -20719710 - MIR SINE MIR -68 194 117 580 251 149 10 chr15 80660893 80661088 -20719433 + MIR SINE MIR 35 256 -6 311 267 110 40 chr15 80661088 80661414 -20719107 - HAL1 LINE L1 -1311 1196 848 415 261 121 89 chr15 80661713 80662061 -20718460 - HAL1 LINE L1 -2145 362 4 811 166 34 63 chr15 80662083 80662258 -20718263 + AluSg/x SINE Alu 135 304 -6 2046 100 4 4 chr15 80662884 80663192 -20717329 + AluSx SINE Alu 1 308 0 1620 175 10 33 chr15 80663210 80663513 -20717008 - AluJo SINE Alu -16 296 1 25 51 0 0 chr15 80663874 80663913 -20716608 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr15 80664067 80664097 -20716424 + AT_rich Low_complexity Low_complexity 1 30 0 2209 102 3 0 chr15 80664133 80664444 -20716077 + AluSx SINE Alu 1 312 0 270 286 114 9 chr15 80664529 80664634 -20715887 - L2 LINE L2 -1 3312 3197 1835 184 33 0 chr15 80664638 80664974 -20715547 - MER7A DNA MER2_type 0 346 2 469 270 128 48 chr15 80665054 80665513 -20715008 + MLT1H LTR MaLR 14 549 0 330 267 43 26 chr15 80666137 80666253 -20714268 + MIR SINE MIR 142 259 -3 1376 245 278 72 chr15 80666445 80667425 -20713096 + L2 LINE L2 1729 2909 -405 382 248 172 0 chr15 80667472 80667617 -20712904 + L2 LINE L2 3095 3264 -49 267 308 113 21 chr15 80668225 80668396 -20712125 - MER5B DNA MER1_type -2 176 2 279 252 49 32 chr15 80668509 80668632 -20711889 - L1ME4a LINE L1 -41 6080 5956 233 294 193 0 chr15 80668685 80668804 -20711717 - L1ME4a LINE L1 -297 5824 5683 270 286 101 8 chr15 80668942 80669061 -20711460 - L1ME4a LINE L1 -671 5450 5321 348 211 70 47 chr15 80669293 80669421 -20711100 + MIR SINE MIR 78 208 -54 207 0 0 0 chr15 80669605 80669628 -20710893 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2128 94 0 27 chr15 80669631 80669928 -20710593 + AluJb SINE Alu 1 289 -23 330 26 0 0 chr15 80670315 80670354 -20710167 + (CCCGG)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr15 80670506 80670534 -20709987 + GC_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr15 80670681 80670712 -20709809 + GC_rich Low_complexity Low_complexity 1 31 0 303 158 0 18 chr15 80671093 80671150 -20709371 - MER5A DNA MER1_type -75 114 59 1942 105 61 4 chr15 80672167 80672444 -20708077 - AluSg SINE Alu -17 293 1 1263 103 6 0 chr15 80672502 80672677 -20707844 - AluY SINE Alu -21 290 115 1918 135 36 198 chr15 80672681 80673258 -20707263 - LTR12 LTR ERV1 -230 484 1 996 92 0 0 chr15 80673258 80673378 -20707143 - AluY SINE Alu -191 120 1 811 249 97 32 chr15 80673449 80673790 -20706731 - L1MC4 LINE L1 -472 7570 7208 266 242 187 0 chr15 80674170 80674241 -20706280 + L1ME LINE L1 348 441 -5975 306 0 0 0 chr15 80674241 80674275 -20706246 + (TG)n Simple_repeat Simple_repeat 2 35 0 266 242 187 0 chr15 80674275 80674294 -20706227 + L1ME LINE L1 441 455 -5961 945 187 83 70 chr15 80674295 80674325 -20706196 - MER31B LTR ERV1 0 485 457 2281 107 3 0 chr15 80674325 80674624 -20705897 + AluSx SINE Alu 9 308 -4 945 187 83 70 chr15 80674624 80674940 -20705581 - MER31B LTR ERV1 -28 457 1 2184 113 0 7 chr15 80674962 80675253 -20705268 + AluSq SINE Alu 1 289 -24 22 56 0 0 chr15 80675253 80675289 -20705232 + AT_rich Low_complexity Low_complexity 1 36 0 2319 117 0 0 chr15 80675292 80675600 -20704921 + AluSg SINE Alu 1 308 -2 480 240 78 85 chr15 80676133 80676269 -20704252 + L1ME LINE L1 805 940 -5528 1833 124 0 48 chr15 80676269 80676607 -20703914 + AluSx SINE Alu 34 312 0 480 240 78 85 chr15 80676607 80676822 -20703699 + L1ME LINE L1 940 1155 -5313 1850 183 0 0 chr15 80676822 80677123 -20703398 + AluJb SINE Alu 1 301 -11 480 240 78 85 chr15 80677123 80677291 -20703230 + L1ME LINE L1 1155 1558 -4910 1808 184 89 72 chr15 80677300 80677603 -20702918 - MST-int LTR MaLR -724 927 612 2149 131 3 10 chr15 80677603 80677915 -20702606 - AluSg SINE Alu 0 310 1 1808 184 89 72 chr15 80677915 80678096 -20702425 - MST-int LTR MaLR -1039 612 435 965 164 0 0 chr15 80678225 80678365 -20702156 - AluJo SINE Alu -172 140 1 3379 216 54 40 chr15 80678365 80679295 -20701226 - L1MCb LINE L1 -4870 1175 233 900 157 0 0 chr15 80679585 80679725 -20700796 + AluJb SINE Alu 1 140 -172 2047 122 0 0 chr15 80679738 80680008 -20700513 + AluSx SINE Alu 20 289 -23 1544 167 25 22 chr15 80680008 80680283 -20700238 + MSTB LTR MaLR 147 422 -4 284 269 149 24 chr15 80680292 80680500 -20700021 + LTR33 LTR ERVL 45 278 -243 492 49 0 0 chr15 80680696 80680757 -20699764 + L1P LINE L1 4730 4790 -1356 391 120 20 6 chr15 80680757 80680857 -20699664 - MER4A LTR ERV1 -244 420 261 657 121 0 10 chr15 80680857 80680956 -20699565 - MER4A LTR ERV1 -566 98 1 738 118 0 0 chr15 80680957 80681067 -20699454 + Tigger3(Golem) DNA MER2_type 2629 2738 -291 1794 98 0 8 chr15 80681116 80681352 -20699169 + AluSg SINE Alu 59 292 -18 213 39 0 0 chr15 80681355 80681381 -20699140 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 384 77 0 0 chr15 80681380 80681432 -20699089 + (CA)n Simple_repeat Simple_repeat 2 53 0 387 141 0 0 chr15 80681433 80681497 -20699024 + (TA)n Simple_repeat Simple_repeat 2 65 0 240 255 0 43 chr15 80681499 80681593 -20698928 - L1MC4 LINE L1 -1339 6703 6614 318 311 0 0 chr15 80681613 80681703 -20698818 + L1MC4 LINE L1 6614 6703 -1339 910 186 0 12 chr15 80681973 80682134 -20698387 + AluJo SINE Alu 1 159 -153 227 374 0 0 chr15 80682251 80682342 -20698179 - L1 LINE L1 -2021 4125 4035 567 258 37 0 chr15 80682473 80682636 -20697885 - L1MEc LINE L1 -4652 1744 1576 4182 95 30 11 chr15 80682647 80683269 -20697252 - L1MA2 LINE L1 -4 6300 5667 895 117 8 0 chr15 80683369 80683489 -20697032 - AluSc SINE Alu -188 121 1 973 227 72 19 chr15 80684024 80684288 -20696233 + MLT1D LTR MaLR 3 280 -225 1919 173 103 8 chr15 80684294 80684681 -20695840 - LTR1B LTR ERV1 0 826 403 8739 147 103 45 chr15 80684781 80686458 -20694063 + L1M1 LINE L1 753 2527 -5038 22 80 0 0 chr15 80687652 80687702 -20692819 + AT_rich Low_complexity Low_complexity 1 50 0 2383 100 0 3 chr15 80688840 80689149 -20691372 + AluSg SINE Alu 1 308 -2 183 42 0 0 chr15 80689298 80689322 -20691199 + (CA)n Simple_repeat Simple_repeat 2 25 0 1683 110 0 9 chr15 80690148 80690376 -20690145 + AluSp SINE Alu 79 304 -9 2157 110 0 23 chr15 80690671 80690971 -20689550 + AluSx SINE Alu 1 293 -19 3032 72 149 172 chr15 80691021 80691732 -20688789 - LTR12 LTR ERV1 0 714 20 556 237 76 0 chr15 80691853 80691971 -20688550 - MER69 DNA AcHobo -1868 658 532 1899 124 7 7 chr15 80691974 80692257 -20688264 - AluSx SINE Alu -4 308 26 262 213 120 0 chr15 80692290 80692398 -20688123 + L1ME4a LINE L1 5188 5308 -838 382 248 160 36 chr15 80692446 80692753 -20687768 + L1ME4a LINE L1 5554 5898 -223 1953 107 0 4 chr15 80692926 80693189 -20687332 - AluSg SINE Alu -7 303 42 2125 108 0 21 chr15 80694163 80694470 -20686051 - AluSx SINE Alu 0 301 1 2138 115 7 0 chr15 80695120 80695408 -20685113 + AluSx SINE Alu 1 290 -22 282 56 0 0 chr15 80696228 80696264 -20684257 + (TCC)n Simple_repeat Simple_repeat 3 38 0 2100 107 17 3 chr15 80696312 80696601 -20683920 - AluSx SINE Alu -19 293 1 756 192 0 0 chr15 80696601 80696726 -20683795 + AluJb SINE Alu 175 299 -13 265 183 17 0 chr15 80696728 80696788 -20683733 - HsTC2 DNA Tc2 -1835 63 3 21 36 0 0 chr15 80696975 80697003 -20683518 + AT_rich Low_complexity Low_complexity 1 28 0 2588 231 102 35 chr15 80697070 80698157 -20682364 + L1ME3A LINE L1 5004 6170 0 2521 64 3 0 chr15 80698333 80698629 -20681892 - AluSp SINE Alu -16 297 1 2379 98 0 0 chr15 80699345 80699651 -20680870 + AluY SINE Alu 1 306 -5 751 236 82 17 chr15 80700157 80700390 -20680131 - L1MC5 LINE L1 -1091 6870 6623 2228 101 0 3 chr15 80700510 80700796 -20679725 - AluSc SINE Alu -24 285 1 1764 267 21 29 chr15 80700931 80701290 -20679231 - MER45C DNA AcHobo -481 472 116 2218 117 7 0 chr15 80701290 80701589 -20678932 + AluSx SINE Alu 1 301 -11 1764 267 21 29 chr15 80701589 80701705 -20678816 - MER45C DNA AcHobo -837 116 1 1284 179 43 0 chr15 80701726 80701960 -20678561 + Charlie1b DNA MER1_type 6 249 -274 2404 108 0 6 chr15 80701972 80702286 -20678235 - AluSx SINE Alu 0 312 1 189 0 0 0 chr15 80702303 80702324 -20678197 + (TG)n Simple_repeat Simple_repeat 2 22 0 1307 188 55 17 chr15 80702324 80702521 -20678000 - L1M4 LINE L1 -1897 4249 4036 2187 122 3 3 chr15 80702521 80702824 -20677697 + AluSp SINE Alu 1 303 -10 1307 188 55 17 chr15 80702824 80702918 -20677603 - L1M4 LINE L1 -2110 4036 3947 259 189 75 0 chr15 80702925 80702978 -20677543 + Charlie1b DNA MER1_type 465 521 -2 606 294 52 36 chr15 80702983 80703235 -20677286 + MIR SINE MIR 7 262 0 2272 115 3 0 chr15 80703994 80704298 -20676223 - AluSp SINE Alu -8 305 1 399 330 97 22 chr15 80704475 80704969 -20675552 + L2 LINE L2 1812 2342 -972 279 0 0 0 chr15 80705320 80705351 -20675170 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2231 95 3 0 chr15 80705355 80705639 -20674882 - AluSq SINE Alu -28 285 1 254 200 0 88 chr15 80705639 80705719 -20674802 + MIR SINE MIR 92 164 -98 2268 92 28 0 chr15 80706102 80706386 -20674135 + AluSc SINE Alu 1 292 -17 490 262 104 40 chr15 80706477 80706938 -20673583 + MLT1L LTR MaLR 24 593 -22 240 302 79 24 chr15 80707044 80707170 -20673351 + MLT1L LTR MaLR 23 155 -460 190 354 108 19 chr15 80707229 80707489 -20673032 + L2 LINE L2 2457 2739 -575 2067 101 0 70 chr15 80707502 80707633 -20672888 + AluSq SINE Alu 5 144 -169 2079 106 25 0 chr15 80707633 80707931 -20672590 + AluSg SINE Alu 1 305 0 2067 101 0 70 chr15 80707931 80708125 -20672396 + AluSq SINE Alu 144 308 -5 648 257 36 65 chr15 80708316 80708608 -20671913 + MER39 LTR ERV1 1 509 -198 247 89 156 0 chr15 80708626 80708671 -20671850 - U2 snRNA snRNA -135 53 2 252 291 23 12 chr15 80708747 80708833 -20671688 + L1MC/D LINE L1 5643 5729 -2079 2390 100 0 3 chr15 80708882 80709192 -20671329 - AluSc SINE Alu 0 309 1 882 229 189 25 chr15 80709236 80709602 -20670919 - HAL1 LINE L1 -481 2026 1601 981 298 71 38 chr15 80709634 80709688 -20670833 + L1MEd LINE L1 29 80 -6039 2540 70 0 0 chr15 80709688 80709988 -20670533 + AluY SINE Alu 1 300 -11 981 298 71 38 chr15 80709988 80710429 -20670092 + L1MEd LINE L1 80 540 -5579 486 316 75 0 chr15 80710531 80710705 -20669816 + MER5A DNA MER1_type 2 188 -1 337 281 178 28 chr15 80710871 80711121 -20669400 + L1MC4a LINE L1 5602 5825 -345 25 65 0 0 chr15 80711128 80711174 -20669347 + AT_rich Low_complexity Low_complexity 1 46 0 337 208 52 10 chr15 80711303 80711399 -20669122 - HAL1b LINE L1 -496 852 753 291 104 0 0 chr15 80711504 80711552 -20668969 + U7 snRNA snRNA 1 48 -15 372 328 100 34 chr15 80711729 80712110 -20668411 - HAL1 LINE L1 -711 1796 1391 512 236 32 77 chr15 80712115 80712361 -20668160 - L2 LINE L2 -1 3312 3078 2009 153 0 3 chr15 80712371 80712665 -20667856 - AluJb SINE Alu -14 298 6 589 288 50 76 chr15 80712696 80713251 -20667270 - HAL1 LINE L1 -1156 1351 811 1173 177 49 0 chr15 80713544 80713747 -20666774 + AluJo SINE Alu 85 297 -15 371 97 88 23 chr15 80714017 80714104 -20666417 - MLT1G1 LTR MaLR 0 593 452 678 282 23 25 chr15 80714136 80714349 -20666172 - MLT1G1 LTR MaLR -210 385 155 773 171 0 0 chr15 80714562 80714685 -20665836 + FLAM_A SINE Alu 10 132 -10 228 295 11 27 chr15 80715579 80715697 -20664824 + CT-rich Low_complexity Low_complexity 1 180 0 199 313 0 16 chr15 80715697 80715761 -20664760 - L2 LINE L2 -10 3262 3200 2121 123 0 17 chr15 80716563 80716865 -20663656 - AluSx SINE Alu -15 297 1 333 342 92 0 chr15 80717065 80717217 -20663304 + MIR SINE MIR 30 195 -67 197 342 98 16 chr15 80717592 80717785 -20662736 + L2 LINE L2 2152 2360 -954 559 326 74 44 chr15 80717795 80718047 -20662474 + L2 LINE L2 2488 2731 -541 1678 151 30 33 chr15 80718047 80718318 -20662203 - AluJb SINE Alu -12 300 31 559 326 74 44 chr15 80718318 80718828 -20661693 + L2 LINE L2 2731 3272 0 1442 145 35 0 chr15 80718919 80719201 -20661320 + MER33 DNA MER1_type 1 292 -32 2123 125 3 3 chr15 80719201 80719504 -20661017 + AluSx SINE Alu 1 303 -9 2182 91 0 7 chr15 80719604 80719879 -20660642 - AluSx SINE Alu -39 273 1 216 86 0 0 chr15 80720292 80720327 -20660194 + (T)n Simple_repeat Simple_repeat 1 35 0 2206 117 3 10 chr15 80721257 80721564 -20658957 - AluSq SINE Alu -8 305 1 21 82 0 0 chr15 80721682 80721731 -20658790 + AT_rich Low_complexity Low_complexity 1 49 0 645 298 19 34 chr15 80721859 80722064 -20658457 - L2 LINE L2 0 3313 3112 745 166 0 7 chr15 80722115 80722254 -20658267 + MLT1A1 LTR MaLR 1 138 -227 860 198 80 42 chr15 80722254 80722545 -20657976 - MSTD LTR MaLR 0 396 55 2242 126 7 0 chr15 80722545 80722847 -20657674 - AluSx SINE Alu -8 304 1 860 198 80 42 chr15 80722847 80722889 -20657632 - MSTD LTR MaLR -341 55 16 1236 189 18 9 chr15 80722896 80723124 -20657397 + MLT1A1 LTR MaLR 136 365 0 1116 173 209 0 chr15 80723136 80723466 -20657055 - L2 LINE L2 -2442 872 474 275 241 0 0 chr15 80723530 80723588 -20656933 - L2 LINE L2 -196 3076 3019 194 250 0 0 chr15 80723736 80723784 -20656737 + L2 LINE L2 824 871 -2443 511 308 84 31 chr15 80724325 80724552 -20655969 + MIR SINE MIR 9 247 -15 2260 113 0 3 chr15 80725747 80726049 -20654472 - AluSx SINE Alu -11 301 1 238 284 36 126 chr15 80726093 80726315 -20654206 - L2 LINE L2 -86 3186 2985 301 325 32 16 chr15 80727249 80727372 -20653149 + HAL1 LINE L1 9 133 -2374 2128 96 29 4 chr15 80727957 80728237 -20652284 - AluSx SINE Alu -22 290 4 662 193 0 0 chr15 80728294 80728408 -20652113 + FLAM_A SINE Alu 24 137 -5 1695 200 45 63 chr15 80728424 80728930 -20651591 + MLT1D LTR MaLR 2 498 -7 318 323 155 10 chr15 80728930 80729221 -20651300 + HAL1 LINE L1 1593 1925 -582 267 227 27 0 chr15 80729497 80729572 -20650949 + HAL1 LINE L1 2069 2145 -362 376 233 128 53 chr15 80730256 80730389 -20650132 - MER91B DNA MER1_type -22 168 26 252 259 157 67 chr15 80730587 80730842 -20649679 - L2 LINE L2 -1015 2299 2022 2413 89 0 0 chr15 80732153 80732445 -20648076 + AluSc SINE Alu 1 292 -17 206 382 36 0 chr15 80732858 80732968 -20647553 + L2 LINE L2 3200 3313 0 527 254 43 82 chr15 80733287 80733566 -20646955 - L1ME4a LINE L1 -261 5860 5593 998 173 139 0 chr15 80733592 80733690 -20646831 - AluJo SINE Alu -81 231 148 248 0 31 0 chr15 80733690 80733722 -20646799 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 998 173 139 0 chr15 80733722 80733825 -20646696 - AluJo SINE Alu -164 148 2 519 154 45 9 chr15 80733980 80734090 -20646431 - L1MB4 LINE L1 -23 6157 6044 27 49 0 0 chr15 80734094 80734135 -20646386 + AT_rich Low_complexity Low_complexity 1 41 0 1368 151 53 0 chr15 80734141 80734347 -20646174 - AluJo SINE Alu -91 221 5 3217 134 59 20 chr15 80734512 80734854 -20645667 - L1MB4 LINE L1 0 6180 5802 2322 88 24 0 chr15 80734854 80735025 -20645496 - AluY SINE Alu -9 302 120 441 0 0 0 chr15 80735025 80735074 -20645447 + (TG)n Simple_repeat Simple_repeat 2 50 0 2322 88 24 0 chr15 80735074 80735197 -20645324 - AluY SINE Alu -191 120 1 3217 134 59 20 chr15 80735197 80735464 -20645057 - L1MB4 LINE L1 -378 5802 5547 3769 167 33 11 chr15 80736455 80737178 -20643343 + L1MB7 LINE L1 5446 6184 0 2140 112 10 3 chr15 80737209 80737504 -20643017 - AluSq SINE Alu -16 297 1 338 161 0 0 chr15 80737505 80737561 -20642960 - MER53 DNA DNA -133 56 1 283 97 0 161 chr15 80737561 80737606 -20642915 + MER58A DNA MER1_type 45 79 -28 295 247 43 32 chr15 80738211 80738304 -20642217 - MIR SINE MIR -50 212 119 1859 142 4 0 chr15 80738521 80738782 -20641739 - AluSx SINE Alu -50 262 1 748 254 97 38 chr15 80738784 80739072 -20641449 - L2 LINE L2 -14 3299 2995 1992 125 10 28 chr15 80739476 80739803 -20640718 + AluSx SINE Alu 1 322 0 2952 6 0 0 chr15 80739997 80740308 -20640213 + AluYa5 SINE Alu 1 311 0 2294 106 0 0 chr15 80740926 80741237 -20639284 + AluYa5 SINE Alu 1 311 0 212 263 137 16 chr15 80741642 80741735 -20638786 + MIR SINE MIR 67 170 -38 1541 158 82 4 chr15 80741736 80742015 -20638506 + AluJb SINE Alu 1 301 -11 2174 45 56 4 chr15 80742017 80742336 -20638185 + AluY SINE Alu 1 333 0 628 220 107 0 chr15 80742735 80742894 -20637627 - MIR SINE MIR -52 210 35 22 56 0 0 chr15 80743577 80743613 -20636908 + GC_rich Low_complexity Low_complexity 1 36 0 273 241 48 12 chr15 80744025 80744108 -20636413 + MIR3 SINE MIR 7 92 -116 526 254 191 32 chr15 80744796 80745219 -20635302 - L2 LINE L2 -9 3304 2406 2166 114 0 3 chr15 80746670 80746968 -20633553 - AluSx SINE Alu -15 297 1 845 106 50 6 chr15 80746988 80747310 -20633211 + (TCCA)n Simple_repeat Simple_repeat 1 336 0 259 253 99 0 chr15 80747626 80747717 -20632804 + L2 LINE L2 3203 3302 -11 291 254 60 0 chr15 80747759 80747826 -20632695 - MIR SINE MIR -100 108 38 197 310 56 49 chr15 80748979 80749121 -20631400 + MIR SINE MIR 29 171 -91 238 152 114 76 chr15 80749382 80749461 -20631060 - MLT1F1 LTR MaLR -13 554 473 232 289 12 24 chr15 80749596 80749679 -20630842 - MLT1H LTR MaLR -343 206 125 268 322 52 17 chr15 80749737 80749852 -20630669 - MIR3 SINE MIR -29 179 61 2360 107 0 0 chr15 80750914 80751214 -20629307 - AluSx SINE Alu -12 300 1 339 295 11 11 chr15 80752211 80752306 -20628215 - MIR3 SINE MIR -50 158 64 346 272 80 86 chr15 80752735 80753036 -20627485 - L2 LINE L2 -63 3209 2911 300 300 130 17 chr15 80753088 80753381 -20627140 - L2 LINE L2 -1001 2313 1988 275 356 118 16 chr15 80753558 80753873 -20626648 - L2 LINE L2 -568 2746 2400 779 187 22 0 chr15 80753881 80754020 -20626501 + FRAM SINE Alu 5 146 -30 330 26 0 0 chr15 80754027 80754066 -20626455 + (CA)n Simple_repeat Simple_repeat 2 40 0 427 248 34 50 chr15 80754705 80754924 -20625597 + MIR SINE MIR 41 253 -9 1725 107 121 32 chr15 80756381 80756662 -20623859 - AluSx SINE Alu -6 306 1 2251 107 0 36 chr15 80756869 80757178 -20623343 - AluSx SINE Alu -14 298 1 276 167 0 0 chr15 80758182 80758254 -20622267 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 648 132 0 0 chr15 80758268 80758359 -20622162 - FRAM SINE Alu -24 152 62 634 272 111 8 chr15 80759668 80759903 -20620618 + L1ME4a LINE L1 5513 5771 -350 369 203 32 158 chr15 80759929 80760087 -20620434 + L1ME4a LINE L1 5827 5964 -157 486 273 9 18 chr15 80760233 80760343 -20620178 - MIR3 SINE MIR -23 185 77 608 235 149 18 chr15 80761157 80761378 -20619143 + MIR SINE MIR 13 262 0 2384 89 0 16 chr15 80762707 80763022 -20617499 + AluSg SINE Alu 1 310 0 422 223 74 50 chr15 80763435 80763556 -20616965 - MIR SINE MIR -71 191 68 216 366 12 0 chr15 80763713 80763795 -20616726 + L2 LINE L2 3179 3261 -11 706 295 148 28 chr15 80764253 80764627 -20615894 + L2 LINE L2 2081 2523 -791 1762 191 3 10 chr15 80764627 80764926 -20615595 - AluJo SINE Alu -15 297 1 706 295 148 28 chr15 80764926 80765016 -20615505 + L2 LINE L2 2523 2601 -713 231 188 100 38 chr15 80765067 80765147 -20615374 - MLT1I LTR MaLR -10 399 315 433 301 37 7 chr15 80765294 80765430 -20615091 - MIR SINE MIR -117 145 6 1865 150 3 38 chr15 80766610 80766923 -20613598 + AluSx SINE Alu 6 307 -5 2195 110 7 7 chr15 80767145 80767446 -20613075 + AluSx SINE Alu 1 301 -11 966 226 54 9 chr15 80767767 80767988 -20612533 + MIR SINE MIR 2 232 -30 210 224 61 0 chr15 80767961 80768010 -20612511 + L2 LINE L2 3210 3261 -11 * 924 107 0 30 chr15 80768359 80768490 -20612031 - FLAM_C SINE Alu -6 127 1 399 274 303 0 chr15 80768825 80769000 -20611521 - MIR SINE MIR -33 229 2 2346 84 0 7 chr15 80770021 80770319 -20610202 - AluSx SINE Alu -16 296 1 24 0 0 0 chr15 80773123 80773147 -20607374 + AT_rich Low_complexity Low_complexity 1 24 0 22 80 0 0 chr15 80773303 80773353 -20607168 + AT_rich Low_complexity Low_complexity 1 50 0 198 103 0 0 chr15 80773799 80773828 -20606693 + (A)n Simple_repeat Simple_repeat 1 29 0 2339 93 0 10 chr15 80776279 80776581 -20603940 - AluSg SINE Alu -11 299 1 553 210 166 0 chr15 80777186 80777391 -20603130 + Charlie1 DNA MER1_type 1773 2011 -750 861 194 7 0 chr15 80777391 80777546 -20602975 - FRAM SINE Alu -20 156 1 543 194 16 0 chr15 80777546 80777675 -20602846 + Charlie1 DNA MER1_type 1996 2126 -635 4643 122 25 10 chr15 80777698 80778468 -20602053 + L1PA14 LINE L1 5370 6150 -11 1175 167 108 17 chr15 80778469 80778822 -20601699 + Charlie1 DNA MER1_type 2327 2711 -50 1698 97 22 0 chr15 80778823 80779049 -20601472 - AluSx SINE Alu -20 292 62 1238 77 0 29 chr15 80779149 80779319 -20601202 + AluY SINE Alu 139 303 -8 2058 105 65 3 chr15 80779597 80779891 -20600630 - AluSx SINE Alu 0 312 1 1060 103 0 28 chr15 80779891 80780036 -20600485 - AluSq/x SINE Alu -171 141 1 360 236 79 0 chr15 80780515 80780604 -20599917 + MIR3 SINE MIR 91 186 -22 397 274 9 26 chr15 80780687 80780800 -20599721 - MIR3 SINE MIR -17 191 81 529 256 131 6 chr15 80782190 80782350 -20598171 + MER5A DNA MER1_type 9 188 -1 343 306 142 21 chr15 80782386 80782857 -20597664 + L2 LINE L2 1569 2096 -1218 498 283 100 11 chr15 80783053 80783227 -20597294 - MIR SINE MIR -29 233 50 27 62 0 0 chr15 80783227 80783275 -20597246 + AT_rich Low_complexity Low_complexity 1 48 0 1323 260 87 44 chr15 80783506 80783675 -20596846 - L1ME3 LINE L1 -282 5880 5720 2439 71 0 3 chr15 80783675 80783970 -20596551 - AluY SINE Alu -17 294 1 1323 260 87 44 chr15 80783970 80784755 -20595766 - L1ME3 LINE L1 -442 5720 4724 3234 241 61 142 chr15 80784801 80784950 -20595571 - L2 LINE L2 -1576 1738 1579 2160 128 3 0 chr15 80784950 80785247 -20595274 + AluSc SINE Alu 1 298 -11 3234 241 61 142 chr15 80785247 80785930 -20594591 - L2 LINE L2 -1735 1579 842 379 242 45 45 chr15 80785930 80786062 -20594459 - MER20B DNA MER1_type -604 179 48 3234 241 61 142 chr15 80786062 80786143 -20594378 - L2 LINE L2 -2472 842 756 2108 95 4 0 chr15 80786143 80786416 -20594105 + AluSx SINE Alu 36 309 -3 3234 241 61 142 chr15 80786416 80787259 -20593262 - L2 LINE L2 -2558 756 2 1604 234 51 70 chr15 80787422 80788012 -20592509 - MLT1E LTR MaLR 0 593 15 473 150 62 0 chr15 80788131 80788211 -20592310 + FRAM SINE Alu 8 92 -84 2163 63 0 76 chr15 80788721 80789037 -20591484 - AluY SINE Alu -19 292 1 1727 159 0 63 chr15 80789752 80790085 -20590436 + AluJb SINE Alu 1 312 0 639 209 93 16 chr15 80790150 80790279 -20590242 + MER5A DNA MER1_type 2 140 -49 239 290 16 0 chr15 80790484 80790546 -20589975 + MER5A DNA MER1_type 126 188 -1 1664 184 17 3 chr15 80790585 80790884 -20589637 - AluJo SINE Alu -9 303 1 612 295 118 50 chr15 80791692 80792226 -20588295 + L2 LINE L2 2697 3271 -1 246 184 61 0 chr15 80792279 80792328 -20588193 + Tigger3(Golem) DNA MER2_type 1 52 -2977 549 191 38 69 chr15 80792328 80792417 -20588104 + Tigger3(Golem) DNA MER2_type 2909 2994 -44 2272 97 0 13 chr15 80792417 80792716 -20587805 - AluY SINE Alu -16 295 1 549 191 38 69 chr15 80792716 80792757 -20587764 + Tigger3(Golem) DNA MER2_type 2994 3035 -3 303 215 15 0 chr15 80792827 80792892 -20587629 - 7SK RNA RNA -1 192 127 1084 210 99 4 chr15 80794194 80794437 -20586084 + Tigger7 DNA MER2_type 2 267 -466 656 110 10 10 chr15 80794434 80794534 -20585987 + Tigger7 DNA MER2_type 2392 2491 0 * 2172 125 10 0 chr15 80794563 80794860 -20585661 - AluSp SINE Alu -13 300 1 2369 257 83 36 chr15 80795101 80795911 -20584610 - L2 LINE L2 0 3313 2432 2244 113 0 0 chr15 80795911 80796204 -20584317 - AluSc SINE Alu -16 293 1 2369 257 83 36 chr15 80796204 80796458 -20584063 - L2 LINE L2 -881 2432 2191 1411 142 46 0 chr15 80796960 80797179 -20583342 - AluJb SINE Alu -83 229 1 389 308 8 17 chr15 80797840 80797960 -20582561 - L2 LINE L2 -1 3312 3194 496 255 12 39 chr15 80798638 80798830 -20581691 + MLT1J LTR MaLR 1 148 -302 306 67 67 0 chr15 80798830 80798875 -20581646 - MER6B DNA MER2_type 0 210 163 * 447 228 40 0 chr15 80798873 80798974 -20581547 - MER6B DNA MER2_type -171 105 1 340 286 43 14 chr15 80799097 80799237 -20581284 + MLT1J LTR MaLR 329 472 -39 255 79 0 0 chr15 80800088 80800126 -20580395 + (A)n Simple_repeat Simple_repeat 1 38 0 187 279 333 16 chr15 80800239 80800368 -20580153 + L2 LINE L2 2594 2763 -551 217 258 0 108 chr15 80800370 80800463 -20580058 - MER5B DNA MER1_type -10 168 86 353 190 11 0 chr15 80800868 80800948 -20579573 - MER69 DNA AcHobo -120 57 1 427 221 156 39 chr15 80800968 80801152 -20579369 + MIR SINE MIR 45 250 -12 1518 106 0 0 chr15 80801346 80801545 -20578976 + AluY SINE Alu 113 311 0 12118 219 31 54 chr15 80801545 80802290 -20578231 + L1PA16 LINE L1 1972 2732 -4136 2095 132 78 34 chr15 80802290 80802700 -20577821 - MSTA LTR MaLR 0 428 1 12118 219 31 54 chr15 80802700 80802993 -20577528 + L1PA16 LINE L1 2732 3030 -3838 2061 125 0 13 chr15 80802993 80803298 -20577223 + AluSx SINE Alu 1 301 -11 12118 219 31 54 chr15 80803298 80805038 -20575483 + L1PA16 LINE L1 3030 4808 -2060 1129 0 0 0 chr15 80805038 80805164 -20575357 + AluY SINE Alu 186 311 0 12118 219 31 54 chr15 80805164 80805236 -20575285 + L1PA16 LINE L1 4808 4880 -1988 2190 104 7 0 chr15 80805236 80805534 -20574987 + AluSx SINE Alu 1 300 -12 12118 219 31 54 chr15 80805534 80806769 -20573752 + L1PA16 LINE L1 4880 6142 -726 1295 55 0 0 chr15 80806769 80806932 -20573589 - L1PA5 LINE L1 -3 6151 5989 4111 142 35 3 chr15 80806932 80807611 -20572910 + L1PA16 LINE L1 6155 6865 -3 12118 219 31 54 chr15 80807611 80807630 -20572891 + L1PA16 LINE L1 6140 6196 -672 742 238 229 21 chr15 80807784 80808064 -20572457 + MSTD LTR MaLR 1 360 -36 2070 128 101 32 chr15 80808064 80808274 -20572247 - Tigger2a DNA MER2_type -2274 434 240 2064 103 58 7 chr15 80808274 80808565 -20571956 + AluSx SINE Alu 3 308 -4 2070 128 101 32 chr15 80808565 80808760 -20571761 - Tigger2a DNA MER2_type -2468 240 1 742 238 229 21 chr15 80808760 80808807 -20571714 + MSTD LTR MaLR 360 396 0 372 375 40 26 chr15 80808814 80808857 -20571664 + L2 LINE L2 1990 2031 -1283 2179 153 8 8 chr15 80808857 80809223 -20571298 + MER47A DNA MER2_type 1 366 0 372 375 40 26 chr15 80809223 80809526 -20570995 + L2 LINE L2 2031 2341 -973 392 243 10 39 chr15 80809807 80809910 -20570611 + MIR3 SINE MIR 108 207 -1 185 366 68 58 chr15 80809955 80810146 -20570375 + L2 LINE L2 2457 2649 -665 621 131 19 0 chr15 80810252 80810359 -20570162 - L1MB2 LINE L1 -7 6164 6056 1330 229 8 79 chr15 80810581 80810948 -20569573 + MER102b DNA MER1_type 1 341 0 392 182 91 9 chr15 80810973 80811083 -20569438 + LTR37B LTR ERV1 350 468 0 2455 72 0 3 chr15 80811293 80811597 -20568924 + AluY SINE Alu 1 303 -8 257 77 0 0 chr15 80811614 80811653 -20568868 - LTR53 LTR ERVL -64 455 417 424 262 138 0 chr15 80812280 80812425 -20568096 + MER5A DNA MER1_type 7 171 -18 2030 109 0 4 chr15 80812655 80812922 -20567599 - AluSx SINE Alu -34 278 13 1137 159 53 10 chr15 80814186 80814394 -20566127 + AluJo SINE Alu 89 305 -7 2740 157 71 12 chr15 80814612 80815102 -20565419 + LTR53 LTR ERVL 1 519 0 705 313 130 7 chr15 80815291 80815598 -20564923 + L2 LINE L2 2967 3311 -2 2091 130 31 0 chr15 80816359 80816651 -20563870 - AluSx SINE Alu -10 302 2 26 30 0 0 chr15 80816854 80816887 -20563634 + AT_rich Low_complexity Low_complexity 1 33 0 2270 107 0 0 chr15 80817200 80817491 -20563030 - AluSx SINE Alu -21 291 1 400 282 18 41 chr15 80817660 80817830 -20562691 - L1ME2 LINE L1 -10 6154 5989 288 188 17 0 chr15 80817847 80817911 -20562610 - L1ME LINE L1 -674 5496 5429 1493 194 127 3 chr15 80818037 80818470 -20562051 + L1ME2 LINE L1 5639 6154 -8 276 227 53 116 chr15 80818504 80818729 -20561792 + L1MC4 LINE L1 7829 8039 -3 488 91 0 0 chr15 80818912 80818978 -20561543 + L1PA15 LINE L1 6030 6095 -70 1913 116 46 36 chr15 80819194 80819497 -20561024 + AluSx SINE Alu 1 306 -6 2178 67 0 11 chr15 80820735 80821005 -20559516 - AluSx SINE Alu -11 301 35 1566 258 102 29 chr15 80821427 80821977 -20558544 + MLT1E LTR MaLR 2 591 -2 2201 113 12 3 chr15 80822277 80822597 -20557924 + L1PB3 LINE L1 5824 6146 -8 369 281 53 36 chr15 80823204 80823322 -20557199 - L1ME LINE L1 -302 5819 5704 2357 88 7 0 chr15 80823322 80823629 -20556892 + AluSp SINE Alu 1 309 -4 369 281 53 36 chr15 80823629 80823965 -20556556 - L1ME LINE L1 -417 5704 5306 1686 116 36 25 chr15 80823966 80824242 -20556279 - AluSx SINE Alu -11 301 23 1579 289 158 42 chr15 80824331 80825487 -20555034 + L2 LINE L2 1996 3310 -3 1184 267 90 40 chr15 80825563 80825661 -20554860 - L1ME3 LINE L1 -324 5838 5746 1724 154 21 29 chr15 80825661 80825941 -20554580 + AluJo SINE Alu 23 300 -12 1184 267 90 40 chr15 80825941 80826876 -20553645 - L1ME3 LINE L1 -416 5746 4753 438 249 90 2 chr15 80827000 80827256 -20553265 + L1MB3 LINE L1 4358 4643 -1503 2349 101 3 3 chr15 80827651 80827957 -20552564 - AluSq SINE Alu -7 306 1 1794 161 31 11 chr15 80828839 80829271 -20551250 + L1MB3 LINE L1 5181 5619 -564 2496 163 0 38 chr15 80829278 80829756 -20550765 + MER66B LTR ERV1 27 486 0 2401 177 61 11 chr15 80829756 80830294 -20550227 + L1MB3 LINE L1 5616 6180 -3 199 196 54 36 chr15 80830467 80830523 -20549998 + MIR SINE MIR 50 106 -102 22 56 0 0 chr15 80831856 80831892 -20548629 + AT_rich Low_complexity Low_complexity 1 36 0 234 226 21 32 chr15 80831897 80831990 -20548531 + (TTTA)n Simple_repeat Simple_repeat 3 94 0 567 307 122 15 chr15 80832054 80832464 -20548057 + L1M4 LINE L1 2740 3193 -2953 198 284 95 14 chr15 80832555 80832629 -20547892 - L2 LINE L2 -1891 1423 1344 1538 105 102 71 chr15 80833499 80833793 -20546728 + AluSg SINE Alu 1 303 -7 421 196 196 83 chr15 80834090 80834232 -20546289 - MER112 DNA MER1_type 0 260 135 1909 160 96 28 chr15 80834232 80834658 -20545863 - MSTB2 LTR MaLR -2 455 1 421 196 196 83 chr15 80834658 80834745 -20545776 - MER112 DNA MER1_type -125 135 5 2222 100 0 17 chr15 80835476 80835777 -20544744 + AluSg1 SINE Alu 1 296 -13 2179 93 36 10 chr15 80835777 80836079 -20544442 + AluY SINE Alu 1 310 -1 180 77 0 0 chr15 80836565 80836591 -20543930 + (T)n Simple_repeat Simple_repeat 1 26 0 718 200 188 31 chr15 80836867 80837122 -20543399 - MER5C DNA MER1_type 0 324 30 307 268 282 9 chr15 80838395 80838615 -20541906 + L2 LINE L2 3019 3298 -15 23 54 0 0 chr15 80891311 80891348 -20489173 + GC_rich Low_complexity Low_complexity 1 37 0 36 40 0 0 chr15 80892485 80892535 -20487986 + GC_rich Low_complexity Low_complexity 1 50 0 22 123 0 0 chr15 80892610 80892765 -20487756 + GC_rich Low_complexity Low_complexity 1 155 0 276 30 0 0 chr15 80893156 80893189 -20487332 + (CA)n Simple_repeat Simple_repeat 1 33 0 222 240 173 0 chr15 80893218 80893293 -20487228 + MIR SINE MIR 58 145 -63 629 255 156 15 chr15 80895585 80895848 -20484673 - MER102b DNA MER1_type -15 326 27 191 200 0 0 chr15 80895908 80895948 -20484573 + L2 LINE L2 3269 3308 -5 1380 114 17 51 chr15 80897399 80897636 -20482885 - MER30 DNA MER1_type -1 229 1 394 299 143 50 chr15 80898290 80898708 -20481813 + MLT1K LTR MaLR 132 588 0 2135 109 10 23 chr15 80899049 80899353 -20481168 - AluSg SINE Alu -10 300 1 2203 120 0 0 chr15 80899353 80899644 -20480877 - AluSx SINE Alu -21 291 1 331 193 36 36 chr15 80901518 80901601 -20478920 + MIR3 SINE MIR 77 159 -49 2535 75 3 0 chr15 80901647 80901955 -20478566 - AluY SINE Alu 0 311 3 1100 162 6 0 chr15 80901957 80902130 -20478391 - AluSg/x SINE Alu -13 299 126 2200 116 0 10 chr15 80902130 80902441 -20478080 - AluSx SINE Alu -4 308 1 21 0 0 0 chr15 80902622 80902643 -20477878 + AT_rich Low_complexity Low_complexity 1 21 0 378 182 0 0 chr15 80902652 80902718 -20477803 - FLAM_A SINE Alu -4 129 64 362 198 50 25 chr15 80902847 80902931 -20477590 - AluJb SINE Alu -106 196 118 292 220 166 85 chr15 80903527 80903859 -20476662 + MLT1G1 LTR MaLR 185 555 0 2144 104 0 39 chr15 80903940 80904248 -20476273 - AluSx SINE Alu -16 296 1 186 318 45 0 chr15 80904587 80904653 -20475868 - L2 LINE L2 -35 3237 3169 337 345 34 0 chr15 80904936 80905084 -20475437 + L2 LINE L2 3159 3311 -2 2261 106 0 0 chr15 80905548 80905841 -20474680 + AluY SINE Alu 1 293 -18 377 305 124 13 chr15 80905911 80906144 -20474377 - L1MEc LINE L1 -2966 3249 2991 232 260 14 0 chr15 80906218 80906291 -20474230 - L1MEc LINE L1 -3325 2890 2817 186 43 0 0 chr15 80906459 80906482 -20474039 + (TG)n Simple_repeat Simple_repeat 2 24 0 1354 89 58 0 chr15 80906553 80906744 -20473777 + MER30 DNA MER1_type 1 202 -28 1402 212 78 125 chr15 80907324 80907942 -20472579 - MLT1E LTR MaLR -4 589 1 2177 116 10 0 chr15 80909519 80909812 -20470709 + AluSg SINE Alu 1 296 -14 303 234 199 6 chr15 80909910 80910081 -20470440 - L1MEc LINE L1 -4946 1450 1247 183 129 0 0 chr15 80911632 80911663 -20468858 + (TG)n Simple_repeat Simple_repeat 2 32 0 2264 122 92 5 chr15 80912319 80912712 -20467809 + L1MB2 LINE L1 5742 6168 -3 262 250 30 60 chr15 80912771 80912871 -20467650 - L2 LINE L2 -211 3061 2965 245 361 36 6 chr15 80913161 80913327 -20467194 + L2 LINE L2 2841 3011 -261 311 168 49 0 chr15 80914968 80915036 -20465485 + MIR SINE MIR 82 146 -62 2251 73 16 35 chr15 80916006 80916319 -20464202 + AluY SINE Alu 1 307 -4 223 345 64 18 chr15 80916738 80916909 -20463612 + L2 LINE L2 2897 3075 -197 1006 116 26 13 chr15 80917722 80917877 -20462644 - AluY SINE Alu -154 157 1 1048 215 44 129 chr15 80917881 80918163 -20462358 - L1M4 LINE L1 -3108 3038 2734 2161 135 0 10 chr15 80918163 80918474 -20462047 + AluJb SINE Alu 5 312 0 1048 215 44 129 chr15 80918474 80918528 -20461993 - L1M4 LINE L1 -3412 2734 2677 2214 114 0 0 chr15 80918528 80918817 -20461704 + AluSx SINE Alu 3 291 -21 1048 215 44 129 chr15 80918817 80918894 -20461627 - L1M4 LINE L1 -3469 2677 2674 2758 132 34 2 chr15 80918894 80919334 -20461187 + L1PA16 LINE L1 5710 6163 -3 1048 215 44 129 chr15 80919334 80919439 -20461082 - L1M4 LINE L1 -3472 2674 2562 2154 123 3 0 chr15 80920303 80920596 -20459925 + AluSx SINE Alu 2 295 -17 2305 61 7 0 chr15 80920846 80921125 -20459396 + AluY SINE Alu 31 311 0 2251 129 0 0 chr15 80922279 80922590 -20457931 + AluSx SINE Alu 1 311 -1 314 222 5 49 chr15 80922751 80922936 -20457585 + GA-rich Low_complexity Low_complexity 1 177 0 328 297 0 49 chr15 80922955 80923140 -20457381 + GA-rich Low_complexity Low_complexity 3 178 0 276 30 0 0 chr15 80923657 80923690 -20456831 + (CA)n Simple_repeat Simple_repeat 1 33 0 222 240 173 0 chr15 80923719 80923794 -20456727 + MIR SINE MIR 58 145 -63 629 255 156 15 chr15 80926084 80926347 -20454174 - MER102b DNA MER1_type -15 326 27 191 200 0 0 chr15 80926407 80926447 -20454074 + L2 LINE L2 3269 3308 -5 1380 114 17 51 chr15 80927898 80928135 -20452386 - MER30 DNA MER1_type -1 229 1 394 299 143 50 chr15 80928789 80929207 -20451314 + MLT1K LTR MaLR 132 588 0 2135 109 10 23 chr15 80929548 80929852 -20450669 - AluSg SINE Alu -10 300 1 2211 109 0 7 chr15 80929852 80930145 -20450376 - AluSx SINE Alu -21 291 1 221 286 114 9 chr15 80930508 80930613 -20449908 + MIR SINE MIR 115 230 -32 847 218 6 6 chr15 80930916 80931090 -20449431 + MER5B DNA MER1_type 2 175 -3 344 261 0 92 chr15 80931105 80931224 -20449297 - MER102b DNA MER1_type -1 340 233 267 87 0 0 chr15 80931252 80931298 -20449223 + L1MA4 LINE L1 6250 6295 -5 2339 101 0 7 chr15 80932519 80932826 -20447695 - AluSc SINE Alu -4 305 1 201 299 104 60 chr15 80932842 80933093 -20447428 - L2 LINE L2 -8 3264 3003 763 205 31 6 chr15 80933426 80933587 -20446934 - MER97b DNA MER1_type? -875 178 14 2395 89 0 22 chr15 80934049 80934363 -20446158 + AluSp SINE Alu 1 307 -6 623 201 196 20 chr15 80934380 80934579 -20445942 + MIR SINE MIR 29 262 0 731 288 69 48 chr15 80935023 80935177 -20445344 - L1ME4a LINE L1 -53 6068 5919 2289 68 11 4 chr15 80935177 80935486 -20445035 - AluY SINE Alu 0 311 1 731 288 69 48 chr15 80935486 80935850 -20444671 - L1ME4a LINE L1 -202 5919 5537 1688 164 39 11 chr15 80935920 80936200 -20444321 - AluJo SINE Alu -24 288 1 1400 109 0 5 chr15 80936245 80936437 -20444084 + L1PB3 LINE L1 5957 6147 -7 2356 119 67 0 chr15 80936769 80937155 -20443366 - L1MB7 LINE L1 -19 6165 5754 775 184 92 6 chr15 80937199 80937373 -20443148 + MER5A DNA MER1_type 1 189 0 2402 74 0 46 chr15 80937801 80938125 -20442396 - AluY SINE Alu -2 309 1 674 228 34 123 chr15 80938996 80939378 -20441143 + MLT1F1-int LTR MaLR 1023 1370 -1 2945 176 75 6 chr15 80939381 80939903 -20440618 + MLT1F1 LTR MaLR 3 560 -7 1593 199 65 39 chr15 80940027 80940458 -20440063 - L1ME3A LINE L1 -33 6137 5696 891 207 5 54 chr15 80943531 80943753 -20436768 + L1ME3 LINE L1 5952 6162 0 1932 129 92 38 chr15 80946103 80946474 -20434047 + MLT2C1 LTR ERVL 1 391 -6 248 135 0 0 chr15 80946441 80946478 -20434043 + MLT2A2 LTR ERVL 415 451 -2 * 2439 81 3 3 chr15 80946643 80946953 -20433568 - AluSp SINE Alu -2 311 2 293 268 125 18 chr15 80947548 80947660 -20432861 + L2 LINE L2 3188 3311 -2 21 0 0 0 chr15 80947743 80947764 -20432757 + AT_rich Low_complexity Low_complexity 1 21 0 303 288 62 25 chr15 80947824 80947984 -20432537 - L2 LINE L2 0 3272 3107 290 284 11 0 chr15 80949225 80949313 -20431208 + MIR SINE MIR 7 95 -167 498 108 0 0 chr15 80949318 80949392 -20431129 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 8031 10 0 0 chr15 80949476 80950422 -20430099 - L1PA3 LINE L1 0 6155 5209 309 225 13 86 chr15 80950429 80950502 -20430019 - L1ME4a LINE L1 -4 6117 6059 2384 90 0 3 chr15 80950502 80950801 -20429720 + AluSx SINE Alu 1 298 -14 309 225 13 86 chr15 80950801 80950878 -20429643 - L1ME4a LINE L1 -62 6059 5978 329 275 128 48 chr15 80950905 80951156 -20429365 - L1ME4a LINE L1 -225 5896 5626 218 161 0 36 chr15 80951212 80951268 -20429253 + (CATA)n Simple_repeat Simple_repeat 3 56 0 1303 158 101 116 chr15 80951550 80952007 -20428514 + LTR7 LTR ERV1 1 450 0 308 316 48 38 chr15 80952099 80952308 -20428213 + L1M4c LINE L1 2276 2486 -3898 2200 106 33 3 chr15 80952351 80952653 -20427868 + AluSx SINE Alu 1 311 -1 1409 132 95 33 chr15 80952869 80953173 -20427348 + MER33 DNA MER1_type 2 324 0 344 68 0 68 chr15 80953373 80953432 -20427089 - L1PB1 LINE L1 -1 6150 6096 2400 90 3 0 chr15 80953432 80953732 -20426789 - AluSc SINE Alu -8 301 1 22 80 0 0 chr15 80953732 80953782 -20426739 + AT_rich Low_complexity Low_complexity 1 50 0 2320 84 0 0 chr15 80953982 80954374 -20426147 - AluSq SINE Alu 0 392 1 996 211 34 8 chr15 80955334 80955571 -20424950 - MIR SINE MIR 0 262 20 2612 80 25 22 chr15 80955757 80956120 -20424401 + THE1B LTR MaLR 1 364 0 3189 37 0 3 chr15 80956189 80956568 -20423953 - L1PA5 LINE L1 -8 6146 5769 473 325 6 6 chr15 80956592 80956749 -20423772 - MIR SINE MIR -93 169 13 369 352 25 0 chr15 80957041 80957200 -20423321 - MIR SINE MIR -66 196 34 314 307 13 33 chr15 80957339 80957492 -20423029 + L2 LINE L2 2251 2400 -914 2269 83 0 0 chr15 80957727 80958015 -20422506 - AluSg SINE Alu -20 290 3 355 381 75 18 chr15 80958214 80958495 -20422026 + L2 LINE L2 2804 3100 -172 195 162 0 0 chr15 80958608 80958645 -20421876 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 8783 150 29 3 chr15 80958788 80960189 -20420332 + ERVL LTR ERVL 3747 5183 -581 400 189 54 0 chr15 80960189 80960263 -20420258 + Tigger5 DNA MER2_type 1 78 -2245 225 265 0 0 chr15 80960267 80960316 -20420205 - Tigger5 DNA MER2_type -7 2316 2268 3604 123 47 5 chr15 80960343 80960896 -20419625 + ERVL-D LTR ERVL 5182 5757 -7 2188 158 9 63 chr15 80960896 80961264 -20419257 + MLT2D LTR ERVL 1 387 -27 2208 92 3 0 chr15 80961264 80961546 -20418975 + AluSq SINE Alu 1 283 -30 214 26 51 26 chr15 80961553 80961592 -20418929 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 2188 158 9 63 chr15 80961592 80961644 -20418877 + MLT2D LTR ERVL 393 406 -8 277 232 12 24 chr15 80961942 80962024 -20418497 - MIR3 SINE MIR -37 171 91 689 207 202 48 chr15 80962856 80963146 -20417375 - L1M4 LINE L1 -2748 3398 3154 2343 75 34 3 chr15 80963146 80963439 -20417082 - AluY SINE Alu -9 302 1 689 207 202 48 chr15 80963439 80963583 -20416938 - L1M4 LINE L1 -2992 3154 2897 1359 185 34 31 chr15 80966288 80966613 -20413908 - L1MB8 LINE L1 -1 6177 5852 2417 118 80 34 chr15 80967005 80967419 -20413102 - Tigger2a DNA MER2_type 0 434 2 36 91 0 0 chr15 80967471 80967570 -20412951 + AT_rich Low_complexity Low_complexity 1 99 0 593 233 58 23 chr15 80967819 80967991 -20412530 + MER5B DNA MER1_type 1 178 0 543 226 151 6 chr15 80968003 80968162 -20412359 - MER5A DNA MER1_type 0 189 8 1196 160 0 11 chr15 80968241 80968429 -20412092 + MER5A DNA MER1_type 4 189 0 691 204 116 55 chr15 80968597 80968778 -20411743 + MER63A DNA MER1_type 19 210 0 2365 110 0 0 chr15 80969202 80969503 -20411018 + AluSx SINE Alu 1 301 -11 275 290 55 41 chr15 80971004 80971149 -20409372 - MER5A DNA MER1_type -5 184 38 180 300 50 10 chr15 80971372 80971472 -20409049 - L2 LINE L2 -964 2350 2247 2214 83 0 10 chr15 80971644 80971958 -20408563 + AluSx SINE Alu 1 311 0 1317 253 78 64 chr15 80972087 80972724 -20407797 - L1ME4a LINE L1 -209 5912 5267 1496 170 41 38 chr15 80972933 80972982 -20407539 - L1MB2 LINE L1 -2 6169 6122 2314 104 3 0 chr15 80972982 80973280 -20407241 - AluSg SINE Alu -11 299 1 1496 170 41 38 chr15 80973280 80973547 -20406974 - L1MB2 LINE L1 -49 6122 5852 1915 141 3 3 chr15 80973589 80973913 -20406608 - AluSx SINE Alu 0 324 1 43287 39 34 2 chr15 80974191 80980124 -20400397 + L1PA2 LINE L1 4 6126 -29 1389 120 0 0 chr15 80980226 80980418 -20400103 + AluSg/x SINE Alu 120 311 -1 347 271 66 26 chr15 80980520 80980671 -20399850 - MER117 DNA MER1_type -38 159 3 226 132 0 0 chr15 80980693 80980731 -20399790 - Alu SINE Alu -5 296 259 822 109 0 0 chr15 80980731 80980841 -20399680 - AluSc SINE Alu -199 110 1 867 149 0 8 chr15 80981466 80981600 -20398921 + FLAM_A SINE Alu 1 133 0 249 167 0 74 chr15 80981704 80981758 -20398763 - L1MB2 LINE L1 -2172 5823 5774 38 39 0 0 chr15 80981805 80981857 -20398664 + AT_rich Low_complexity Low_complexity 1 52 0 235 252 25 59 chr15 80981865 80981977 -20398544 - L1P5 LINE L1 -721 5430 5321 1946 123 3 52 chr15 80981977 80982301 -20398220 - AluJb SINE Alu -4 308 1 440 222 114 48 chr15 80982363 80982530 -20397991 + MER5B DNA MER1_type 1 178 0 320 271 21 0 chr15 80982545 80982641 -20397880 - L2 LINE L2 -2520 794 697 1307 221 89 26 chr15 80982648 80982996 -20397525 - MLT1A2 LTR MaLR -4 370 1 277 283 87 0 chr15 80983544 80983682 -20396839 + MIR3 SINE MIR 41 190 -18 21 36 0 0 chr15 80983780 80983808 -20396713 + AT_rich Low_complexity Low_complexity 1 28 0 214 167 0 0 chr15 80984077 80984113 -20396408 + CT-rich Low_complexity Low_complexity 1 36 0 487 211 21 11 chr15 80984139 80984234 -20396287 - MER81 DNA DNA -8 106 11 213 195 0 0 chr15 80984237 80984278 -20396243 - L2 LINE L2 -43 3270 3230 1969 66 18 40 chr15 80984689 80984961 -20395560 + AluY SINE Alu 1 266 -45 454 308 28 16 chr15 80985044 80985226 -20395295 - MIR SINE MIR -40 222 39 2298 94 3 7 chr15 80986531 80986830 -20393691 + AluSg SINE Alu 1 298 -12 710 212 56 67 chr15 80986894 80986967 -20393554 + MER58B DNA MER1_type 161 233 -2187 2859 58 13 11 chr15 80986967 80987348 -20393173 - L1PA13 LINE L1 0 6163 5782 710 212 56 67 chr15 80987348 80987453 -20393068 + MER58B DNA MER1_type 233 337 -4 2526 68 7 7 chr15 80987539 80987849 -20392672 + AluY SINE Alu 1 310 -1 256 186 3 10 chr15 80987856 80987915 -20392606 - MIR SINE MIR -91 117 61 2416 64 7 3 chr15 80988150 80988445 -20392076 - AluY SINE Alu -14 297 2 1769 201 7 0 chr15 80988647 80988950 -20391571 + AluJb SINE Alu 1 305 -7 2397 83 0 3 chr15 80989050 80989350 -20391171 - AluSq SINE Alu -14 299 1 187 204 0 41 chr15 80990599 80990648 -20389873 - L2 LINE L2 -196 3076 3030 409 192 50 20 chr15 80990651 80990750 -20389771 + L2 LINE L2 3195 3296 -17 210 222 0 32 chr15 80990750 80990813 -20389708 + GA-rich Low_complexity Low_complexity 1 61 0 426 248 133 0 chr15 80990895 80991008 -20389513 + MER91C DNA MER1_type 12 139 -1 206 264 19 0 chr15 80991026 80991079 -20389442 - L2 LINE L2 -303 2969 2916 274 359 56 0 chr15 80991461 80991603 -20388918 - MIR3 SINE MIR -11 197 48 2461 34 14 7 chr15 80993062 80993353 -20387168 + AluY SINE Alu 1 293 -18 839 229 84 28 chr15 80993490 80993739 -20386782 + MLT1K LTR MaLR 320 582 -6 2055 126 10 82 chr15 80993818 80994222 -20386299 + THE1C LTR MaLR 1 375 0 181 274 59 29 chr15 80994611 80994713 -20385808 + L2 LINE L2 2826 2930 -342 210 147 0 0 chr15 80994885 80994919 -20385602 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr15 80995515 80995538 -20384983 + AT_rich Low_complexity Low_complexity 1 23 0 189 296 37 46 chr15 80995776 80995884 -20384637 + L2 LINE L2 2972 3078 -194 190 284 30 15 chr15 80995885 80995952 -20384569 + L2 LINE L2 3010 3077 -195 533 230 30 7 chr15 80996087 80996222 -20384299 + L1ME4a LINE L1 5964 6101 -20 291 279 70 39 chr15 80997103 80997232 -20383289 - MIR3 SINE MIR -17 191 59 258 56 0 0 chr15 80997547 80997583 -20382938 + (CA)n Simple_repeat Simple_repeat 2 37 0 183 156 0 0 chr15 80997674 80997706 -20382815 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 267 103 0 0 chr15 80997939 80997978 -20382543 + (A)n Simple_repeat Simple_repeat 1 39 0 256 0 0 0 chr15 80998849 80998885 -20381636 + AluY SINE Alu 264 299 -4 1359 185 34 31 chr15 80999159 80999484 -20381037 - L1MB8 LINE L1 -1 6177 5852 2417 118 80 34 chr15 80999876 81000290 -20380231 - Tigger2a DNA MER2_type 0 434 2 36 91 0 0 chr15 81000342 81000441 -20380080 + AT_rich Low_complexity Low_complexity 1 99 0 593 233 58 23 chr15 81000690 81000862 -20379659 + MER5B DNA MER1_type 1 178 0 543 226 151 6 chr15 81000874 81001033 -20379488 - MER5A DNA MER1_type 0 189 8 1196 160 0 11 chr15 81001112 81001300 -20379221 + MER5A DNA MER1_type 4 189 0 691 204 116 55 chr15 81001468 81001649 -20378872 + MER63A DNA MER1_type 19 210 0 2365 110 0 0 chr15 81002073 81002374 -20378147 + AluSx SINE Alu 1 301 -11 275 290 55 41 chr15 81003875 81004020 -20376501 - MER5A DNA MER1_type -5 184 38 180 300 50 10 chr15 81004243 81004343 -20376178 - L2 LINE L2 -964 2350 2247 2385 92 0 6 chr15 81004515 81004829 -20375692 + AluSx SINE Alu 1 312 0 183 304 111 17 chr15 81004956 81005137 -20375384 - L2 LINE L2 -1409 1905 1708 186 341 48 24 chr15 81007574 81007782 -20372739 + L2 LINE L2 1742 1954 -1360 262 308 0 0 chr15 81007941 81008019 -20372502 - L2 LINE L2 0 3272 3195 2236 109 0 13 chr15 81008052 81008354 -20372167 - AluSx SINE Alu -14 298 1 898 284 45 29 chr15 81009447 81009760 -20370761 - MLT1L LTR MaLR 0 615 298 218 283 0 0 chr15 81009988 81010041 -20370480 - L2 LINE L2 -10 3303 3251 325 286 122 25 chr15 81010543 81010739 -20369782 - MIR SINE MIR -33 229 15 260 245 104 28 chr15 81010849 81010955 -20369566 + L2 LINE L2 3136 3249 -23 443 16 148 0 chr15 81010960 81011056 -20369465 - AluSg/x SINE Alu 0 319 215 455 209 0 0 chr15 81011190 81011276 -20369245 - L2 LINE L2 0 3313 3228 2337 74 3 3 chr15 81014173 81014484 -20366037 + AluSx SINE Alu 1 311 0 1317 253 78 64 chr15 81014613 81015250 -20365271 - L1ME4a LINE L1 -209 5912 5267 1496 170 41 38 chr15 81015459 81015508 -20365013 - L1MB2 LINE L1 -2 6169 6122 2314 104 3 0 chr15 81015508 81015806 -20364715 - AluSg SINE Alu -11 299 1 1496 170 41 38 chr15 81015806 81016073 -20364448 - L1MB2 LINE L1 -49 6122 5852 1915 141 3 3 chr15 81016115 81016439 -20364082 - AluSx SINE Alu 0 324 1 17589 31 12 1 chr15 81016717 81022682 -20357839 + L1PA2 LINE L1 4 6155 0 294 221 0 4 chr15 81023021 81023087 -20357434 - MER5A DNA MER1_type -84 105 31 2279 95 0 3 chr15 81023154 81023449 -20357072 - AluSq SINE Alu -19 294 1 2275 109 0 0 chr15 81024416 81024718 -20355803 - AluSg SINE Alu -3 307 6 2188 87 28 3 chr15 81025404 81025717 -20354804 + AluSg SINE Alu 1 310 0 198 347 14 0 chr15 81025736 81025808 -20354713 + MIR SINE MIR 49 121 -141 425 333 112 48 chr15 81025839 81026257 -20354264 - L2 LINE L2 -16 3256 2812 292 321 36 9 chr15 81026585 81026697 -20353824 - L2 LINE L2 -48 3224 3110 2306 100 3 0 chr15 81027597 81027897 -20352624 + AluSg SINE Alu 1 301 -9 1126 149 4 107 chr15 81028496 81028690 -20351831 + MER20 DNA MER1_type 3 169 -50 2383 55 3 42 chr15 81028690 81028998 -20351523 + AluY SINE Alu 1 296 -15 1126 149 4 107 chr15 81028998 81029045 -20351476 + MER20 DNA MER1_type 169 219 0 387 236 82 0 chr15 81030027 81030137 -20350384 + MIR SINE MIR 134 252 -10 343 270 8 29 chr15 81030140 81030370 -20350151 - HAL1b LINE L1 -621 727 456 477 240 0 10 chr15 81030384 81030488 -20350033 + L1MC4a LINE L1 7233 7335 -473 395 254 131 56 chr15 81030466 81030533 -20349988 - HAL1b LINE L1 -934 414 353 * 2308 89 3 3 chr15 81030533 81030835 -20349686 - AluY SINE Alu -9 302 1 395 254 131 56 chr15 81030835 81031126 -20349395 - HAL1b LINE L1 -995 353 29 818 301 0 0 chr15 81031846 81032039 -20348482 + LTR16A LTR ERVL 26 218 -232 650 163 22 74 chr15 81032044 81032179 -20348342 + AluJ SINE Alu 6 133 -179 2458 83 0 0 chr15 81032197 81032497 -20348024 + AluY SINE Alu 1 300 -11 950 164 21 21 chr15 81032516 81032705 -20347816 + AluJ SINE Alu 118 306 -6 833 242 0 16 chr15 81032705 81032899 -20347622 + LTR16A LTR ERVL 210 400 -50 2109 86 13 7 chr15 81032911 81033215 -20347306 - AluY SINE Alu 0 311 6 4370 211 161 37 chr15 81033485 81034706 -20345815 - L1MD3 LINE L1 0 8042 6597 216 97 0 0 chr15 81034706 81034737 -20345784 + (CCTA)n Simple_repeat Simple_repeat 2 32 0 4370 211 161 37 chr15 81034737 81035024 -20345497 - L1MD3 LINE L1 -1445 6597 6347 791 206 121 25 chr15 81035026 81035225 -20345296 - L1ME2 LINE L1 -13 6151 5934 1405 180 0 0 chr15 81035243 81035465 -20345056 - AluJo SINE Alu -86 226 5 2989 188 49 70 chr15 81035469 81036064 -20344457 - L1ME2 LINE L1 -214 5950 5344 2383 88 0 20 chr15 81036064 81036369 -20344152 - AluSc SINE Alu -10 299 1 2989 188 49 70 chr15 81036369 81036574 -20343947 - L1ME2 LINE L1 -820 5344 5136 1577 135 5 0 chr15 81036574 81036796 -20343725 - AluSg/x SINE Alu -11 301 79 2989 188 49 70 chr15 81036796 81037245 -20343276 - L1ME2 LINE L1 -1028 5136 4713 659 122 31 0 chr15 81037251 81037349 -20343172 - AluSg/x SINE Alu -14 295 195 640 239 48 5 chr15 81037350 81037538 -20342983 - L1ME2 LINE L1 -1439 4707 4512 266 68 45 0 chr15 81037592 81037636 -20342885 + (TATG)n Simple_repeat Simple_repeat 2 47 0 211 253 25 76 chr15 81037657 81037736 -20342785 - L3 LINE CR1 -175 1402 1328 424 303 87 5 chr15 81038205 81038390 -20342131 - MIR SINE MIR 0 262 63 293 222 12 12 chr15 81039334 81039415 -20341106 + (TCCA)n Simple_repeat Simple_repeat 2 82 0 206 265 19 147 chr15 81040014 81040225 -20340296 - MER5A DNA MER1_type -5 184 1 2523 53 23 7 chr15 81041225 81041529 -20338992 - AluY SINE Alu -2 309 1 2152 113 3 22 chr15 81041797 81042116 -20338405 - AluSp SINE Alu 0 313 1 1987 178 18 18 chr15 81042159 81042547 -20337974 - MLT1B LTR MaLR -2 388 1 2637 61 0 0 chr15 81042769 81043080 -20337441 - AluY SINE Alu 0 311 1 198 0 0 0 chr15 81043092 81043114 -20337407 + (A)n Simple_repeat Simple_repeat 1 22 0 33 43 0 0 chr15 81043119 81043166 -20337355 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr15 81043212 81043233 -20337288 + AT_rich Low_complexity Low_complexity 1 21 0 2873 113 5 0 chr15 81043977 81044419 -20336102 - L1P LINE L1 -946 5200 4757 1183 137 10 10 chr15 81044934 81045138 -20335383 + L1P LINE L1 5199 5402 -744 2340 93 0 13 chr15 81045138 81045449 -20335072 + AluSc SINE Alu 1 307 -2 4434 140 36 30 chr15 81045451 81045581 -20334940 - L1MA9 LINE L1 -63 6249 6121 2414 97 0 0 chr15 81045581 81045880 -20334641 - AluSx SINE Alu -13 299 1 4434 140 36 30 chr15 81045880 81046155 -20334366 - L1MA9 LINE L1 -191 6121 5849 2398 102 0 0 chr15 81046155 81046459 -20334062 - AluSg SINE Alu -6 304 1 4434 140 36 30 chr15 81046459 81046489 -20334032 - L1MA9 LINE L1 -463 5849 5821 2048 94 54 20 chr15 81046489 81046787 -20333734 - AluSx SINE Alu -4 308 1 4434 140 36 30 chr15 81046787 81046814 -20333707 - L1MA9 LINE L1 -491 5821 5796 1880 129 4 0 chr15 81046814 81047086 -20333435 - AluSq SINE Alu -2 311 39 4434 140 36 30 chr15 81047086 81047447 -20333074 - L1MA9 LINE L1 -516 5796 5418 656 255 27 16 chr15 81047447 81047655 -20332866 + LTR41 LTR ERVL 1 238 -557 544 96 24 0 chr15 81047757 81047840 -20332681 + MLT2A2 LTR ERVL 1 85 -368 570 282 65 53 chr15 81047956 81048218 -20332303 + LTR41 LTR ERVL 502 766 -7 550 174 81 81 chr15 81048226 81048398 -20332123 + MER69 DNA AcHobo 2355 2526 0 534 296 163 26 chr15 81049090 81049573 -20330948 + L2 LINE L2 2454 2999 -273 321 277 0 0 chr15 81051503 81051597 -20328924 - L2 LINE L2 -919 2395 2302 304 327 111 6 chr15 81051666 81051828 -20328693 - MIR SINE MIR 0 262 84 308 292 123 21 chr15 81051829 81052065 -20328456 - L2 LINE L2 -1063 2251 1992 2401 86 0 0 chr15 81052117 81052409 -20328112 + AluY SINE Alu 3 294 -17 23 0 0 0 chr15 81052516 81052539 -20327982 + AT_rich Low_complexity Low_complexity 1 23 0 1202 120 23 6 chr15 81052551 81052726 -20327795 - AluSg/x SINE Alu -22 290 113 8021 45 0 0 chr15 81052826 81054578 -20325943 + L1PA2 LINE L1 4403 6155 0 357 368 63 15 chr15 81054590 81054987 -20325534 - L1M4 LINE L1 -871 5275 4860 624 289 91 13 chr15 81055397 81055629 -20324892 - MIR SINE MIR 0 262 13 274 292 77 23 chr15 81055725 81055855 -20324666 - L2 LINE L2 0 3272 3136 2325 105 0 0 chr15 81058217 81058512 -20322009 - AluSg SINE Alu -15 295 1 1714 155 3 61 chr15 81058832 81059161 -20321360 + AluJb SINE Alu 1 310 -2 276 120 0 0 chr15 81059238 81059288 -20321233 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 24 0 0 0 chr15 81059479 81059503 -20321018 + AT_rich Low_complexity Low_complexity 1 24 0 2078 126 3 7 chr15 81059503 81059804 -20320717 + AluY SINE Alu 1 300 -11 182 290 0 16 chr15 81060327 81060389 -20320132 - L3 LINE CR1 -20 1557 1497 234 255 82 51 chr15 81060419 81060517 -20320004 - MLT1L LTR MaLR -38 577 477 219 235 163 10 chr15 81060663 81060761 -20319760 + L2 LINE L2 3192 3304 -9 192 324 76 0 chr15 81061841 81061946 -20318575 + L2 LINE L2 3192 3304 -9 1593 205 24 0 chr15 81061991 81062284 -20318237 - AluJo SINE Alu -12 300 1 2105 57 19 4 chr15 81062483 81062745 -20317776 + AluY SINE Alu 2 267 -44 1591 161 25 7 chr15 81062858 81063137 -20317384 - AluSx SINE Alu -28 284 1 2182 125 3 7 chr15 81063227 81063532 -20316989 + AluSx SINE Alu 1 304 -8 312 268 71 0 chr15 81063656 81063768 -20316753 + L1M4c LINE L1 1259 1378 -5006 726 227 40 82 chr15 81063771 81064172 -20316349 + MLT1A2 LTR MaLR 1 370 -26 3024 226 28 37 chr15 81064225 81064644 -20315877 + L1M4c LINE L1 1576 1997 -4385 2426 99 0 0 chr15 81064644 81064947 -20315574 + AluY SINE Alu 1 303 -8 3024 226 28 37 chr15 81064947 81065551 -20314970 + L1M4c LINE L1 1997 2552 -3830 912 220 105 92 chr15 81066270 81066604 -20313917 - HAL1 LINE L1 0 2507 2160 2178 116 0 3 chr15 81066604 81066896 -20313625 - AluSx SINE Alu -21 291 1 912 220 105 92 chr15 81066896 81067169 -20313352 - HAL1 LINE L1 -347 2160 1892 348 282 153 39 chr15 81067243 81067498 -20313023 - HAL1 LINE L1 -2220 287 4 1844 155 43 46 chr15 81067551 81067822 -20312699 - MER7A DNA MER2_type -2693 345 76 1557 199 10 22 chr15 81067822 81068133 -20312388 + AluJo SINE Alu 6 312 0 1844 155 43 46 chr15 81068133 81068209 -20312312 - MER7A DNA MER2_type -2962 76 1 25 31 0 0 chr15 81068789 81068821 -20311700 + AT_rich Low_complexity Low_complexity 1 32 0 593 247 77 21 chr15 81070391 81070585 -20309936 - L1ME3A LINE L1 -25 6145 5941 254 330 126 0 chr15 81071242 81071345 -20309176 + L2 LINE L2 3156 3271 -1 403 288 106 0 chr15 81071998 81072158 -20308363 + MER5A DNA MER1_type 13 189 0 201 214 25 196 chr15 81073385 81073500 -20307021 - L2 LINE L2 0 3313 3271 967 148 87 20 chr15 81073500 81073696 -20306825 - MER3 DNA MER1_type 0 209 1 201 214 25 196 chr15 81073696 81073855 -20306666 - L2 LINE L2 -42 3271 3086 867 172 49 0 chr15 81073865 81074028 -20306493 - FRAM SINE Alu -5 171 1 1763 106 21 103 chr15 81074680 81074872 -20305649 - AluSx SINE Alu -8 304 149 2280 46 7 56 chr15 81074872 81075177 -20305344 - AluY SINE Alu -21 290 1 1763 106 21 103 chr15 81075177 81075315 -20305206 - AluSx SINE Alu -163 149 1 2061 128 6 10 chr15 81075993 81076306 -20304215 - AluSx SINE Alu 0 312 1 234 0 0 0 chr15 81076402 81076428 -20304093 + (T)n Simple_repeat Simple_repeat 1 26 0 417 236 152 59 chr15 81076501 81076976 -20303545 + L1ME4a LINE L1 5599 6117 -4 1659 166 14 27 chr15 81077445 81077778 -20302743 + AluJb SINE Alu 1 312 0 2475 49 0 0 chr15 81078270 81078558 -20301963 + AluY SINE Alu 24 311 0 1742 129 101 18 chr15 81078807 81079093 -20301428 + AluSx SINE Alu 1 310 -2 1218 133 0 0 chr15 81079678 81079851 -20300670 - AluSg/x SINE Alu -6 304 132 2413 69 0 10 chr15 81079851 81080156 -20300365 - AluY SINE Alu -9 302 1 309 233 122 39 chr15 81080168 81080348 -20300173 + L1M4 LINE L1 2863 3057 -3089 33 43 0 0 chr15 81080382 81080429 -20300092 + AT_rich Low_complexity Low_complexity 1 47 0 251 20 61 20 chr15 81080453 81080502 -20300019 + (TA)n Simple_repeat Simple_repeat 1 51 0 245 256 37 24 chr15 81081674 81081756 -20298765 - MIR SINE MIR -70 138 56 22 70 0 0 chr15 81082900 81082943 -20297578 + GC_rich Low_complexity Low_complexity 1 43 0 413 303 56 34 chr15 81083666 81083900 -20296621 - L2 LINE L2 -89 3183 2945 351 0 0 0 chr15 81083928 81083967 -20296554 + (TG)n Simple_repeat Simple_repeat 2 40 0 182 347 24 44 chr15 81084305 81084556 -20295965 - L2 LINE L2 -864 2450 2205 224 349 0 0 chr15 81084632 81084695 -20295826 + L2 LINE L2 3250 3312 -1 189 0 0 0 chr15 81084864 81084885 -20295636 + (CAGAG)n Simple_repeat Simple_repeat 3 23 0 387 263 21 0 chr15 81085538 81085633 -20294888 + MIR SINE MIR 48 144 -64 767 80 36 9 chr15 81085659 81085771 -20294750 + L1MB8 LINE L1 6053 6167 -11 219 223 0 87 chr15 81086185 81086288 -20294233 + T-rich Low_complexity Low_complexity 1 94 0 44007 31 22 1 chr15 81086290 81092317 -20288204 - L1HS LINE L1 0 6155 2 260 307 88 0 chr15 81094182 81094296 -20286225 + L2 LINE L2 1538 1661 -1653 2225 158 37 31 chr15 81094314 81094860 -20285661 - MLT2A2 LTR ERVL 0 554 1 315 252 138 32 chr15 81094883 81095127 -20285394 + MER65A-int LTR ERV1 3409 3831 -2432 246 216 0 20 chr15 81095454 81095505 -20285016 + C-rich Low_complexity Low_complexity 3 52 0 588 125 0 0 chr15 81095505 81095601 -20284920 + (TTCC)n Simple_repeat Simple_repeat 3 98 0 863 221 0 0 chr15 81095601 81095746 -20284775 - FRAM SINE Alu -32 144 1 321 160 0 0 chr15 81095746 81095796 -20284725 + MER65A-int LTR ERV1 3682 3731 -2867 914 165 17 72 chr15 81095885 81096122 -20284399 + MER65A-int LTR ERV1 3731 3954 -2644 2119 212 116 57 chr15 81096131 81096283 -20284238 + MER65A-int LTR ERV1 2646 2788 -3543 2363 75 3 0 chr15 81096283 81096577 -20283944 + AluY SINE Alu 1 295 -16 2119 212 116 57 chr15 81096577 81097297 -20283224 + MER65A-int LTR ERV1 2788 5094 -1237 575 179 32 8 chr15 81097295 81097418 -20283103 + MER65A-int LTR ERV1 4134 4259 -677 * 2236 214 55 82 chr15 81097407 81098004 -20282517 + MER65A-int LTR ERV1 3635 4215 -656 1414 274 66 21 chr15 81098021 81098492 -20282029 + MER65A-int LTR ERV1 4380 4871 0 235 242 118 43 chr15 81098493 81098654 -20281867 + MER65A LTR ERV1 2 174 -271 1803 290 123 75 chr15 81099067 81099237 -20281284 + L2 LINE L2 1632 1792 -1521 2332 82 23 0 chr15 81099237 81099542 -20280979 - AluSx SINE Alu 0 312 1 1803 290 123 75 chr15 81099542 81100359 -20280162 + L2 LINE L2 1792 2568 -745 273 157 20 39 chr15 81100359 81100410 -20280111 + AluSx SINE Alu 1 50 -250 380 106 0 106 chr15 81100410 81100540 -20279981 + L1PA11 LINE L1 6096 6174 0 1859 119 0 0 chr15 81100540 81100825 -20279696 + AluSx SINE Alu 33 317 0 1803 290 123 75 chr15 81100825 81101176 -20279345 + L2 LINE L2 2567 3083 -230 275 122 40 54 chr15 81101211 81101285 -20279236 + Charlie4 DNA MER1_type 1787 1859 -102 3621 160 26 7 chr15 81101287 81101893 -20278628 - L1MD1 LINE L1 -2 6634 6017 255 270 16 0 chr15 81101904 81101967 -20278554 - L2 LINE L2 -331 2982 2919 245 186 23 0 chr15 81101993 81102036 -20278485 + L1MC/D LINE L1 5616 5659 -583 10988 207 47 29 chr15 81102084 81103296 -20277225 - L1MD1 LINE L1 -743 5797 4608 2510 73 0 10 chr15 81103296 81103610 -20276911 - AluY SINE Alu 0 311 1 10988 207 47 29 chr15 81103610 81105701 -20274820 - L1MD1 LINE L1 -1932 4608 2606 2226 121 0 7 chr15 81105701 81106007 -20274514 - AluSx SINE Alu -8 304 1 10988 207 47 29 chr15 81106007 81106809 -20273712 - L1MD1 LINE L1 -3934 2606 1820 797 235 65 76 chr15 81106816 81107218 -20273303 + MER57A LTR ERV1 2 403 0 7475 165 82 63 chr15 81107219 81107357 -20273164 - L1MD1 LINE L1 -4724 1816 1682 2279 92 0 0 chr15 81107357 81107664 -20272857 - AluSq SINE Alu 0 307 1 7475 165 82 63 chr15 81107664 81108702 -20271819 - L1MD1 LINE L1 -4858 1682 666 183 42 0 0 chr15 81108702 81108726 -20271795 + (TGGG)n Simple_repeat Simple_repeat 3 26 0 7475 165 82 63 chr15 81108726 81109032 -20271489 - L1MD1 LINE L1 -5874 666 368 2550 51 0 0 chr15 81109032 81109327 -20271194 - AluY SINE Alu -16 295 1 7475 165 82 63 chr15 81109327 81109610 -20270911 - L1MD1 LINE L1 -6172 368 13 319 239 0 65 chr15 81109663 81109755 -20270766 + L2 LINE L2 3186 3271 -1 496 183 32 56 chr15 81109826 81109952 -20270569 - Charlie8 DNA MER1_type -2243 174 52 49 32 0 0 chr15 81110593 81110656 -20269865 + AT_rich Low_complexity Low_complexity 1 63 0 2084 135 0 19 chr15 81110676 81110994 -20269527 + AluSx SINE Alu 1 312 0 374 328 0 23 chr15 81111628 81111759 -20268762 - MIR SINE MIR -104 158 31 1808 169 18 21 chr15 81111964 81112301 -20268220 + MER58B DNA MER1_type 1 336 -5 277 229 131 34 chr15 81113845 81113964 -20266557 + MIR SINE MIR 43 177 -62 674 336 8 8 chr15 81114099 81114349 -20266172 + MIR SINE MIR 7 256 -6 201 74 0 0 chr15 81114805 81114832 -20265689 + (TG)n Simple_repeat Simple_repeat 1 27 0 1168 257 62 30 chr15 81114855 81115259 -20265262 - LTR16C LTR ERVL -71 420 4 869 277 28 0 chr15 81115262 81115475 -20265046 + MIR SINE MIR 44 262 0 362 281 64 70 chr15 81115825 81116019 -20264502 - MIR SINE MIR -43 219 23 1828 192 20 18 chr15 81116061 81116404 -20264117 - MER2 DNA MER2_type 0 344 1 2246 102 3 0 chr15 81116474 81116779 -20263742 + AluSx SINE Alu 1 306 -6 230 252 29 58 chr15 81117446 81117549 -20262972 - L1ME LINE L1 -537 5584 5485 2155 105 10 3 chr15 81117978 81118272 -20262249 - AluSq SINE Alu -17 296 1 938 179 18 105 chr15 81118762 81118991 -20261530 + MER3 DNA MER1_type 1 209 0 339 177 114 25 chr15 81118995 81119074 -20261447 + L2 LINE L2 3206 3291 -22 353 294 56 65 chr15 81120238 81120650 -20259871 - HAL1b LINE L1 -673 675 268 1814 144 0 42 chr15 81120971 81121277 -20259244 - AluJo SINE Alu -19 293 1 582 274 113 44 chr15 81121323 81121714 -20258807 - L1MC4 LINE L1 0 8042 7501 3049 173 39 20 chr15 81121714 81122188 -20258333 - L1MB5 LINE L1 0 6174 5685 1807 213 11 29 chr15 81122188 81122563 -20257958 - MLT1A2 LTR MaLR -3 371 4 3049 173 39 20 chr15 81122563 81122682 -20257839 - L1MB5 LINE L1 -489 5685 5570 582 274 113 44 chr15 81122682 81122851 -20257670 - L1MC4 LINE L1 -541 7501 7345 2275 90 6 13 chr15 81123293 81123656 -20256865 - AluSc SINE Alu 0 361 1 447 247 0 10 chr15 81123985 81124082 -20256439 - MER91B DNA MER1_type -2 188 93 248 188 21 0 chr15 81124105 81124153 -20256368 - MER91B DNA MER1_type -66 124 76 313 235 196 0 chr15 81125111 81125213 -20255308 + MIR3 SINE MIR 60 181 -27 787 59 53 0 chr15 81125318 81125470 -20255051 + (TAGA)n Simple_repeat Simple_repeat 3 162 0 1074 226 71 100 chr15 81127423 81127482 -20253039 + L1MC5 LINE L1 7292 7351 -610 2415 80 7 0 chr15 81127482 81127783 -20252738 + AluSc SINE Alu 1 303 -6 1074 226 71 100 chr15 81127783 81127952 -20252569 + L1MC5 LINE L1 7351 7523 -438 1292 240 77 60 chr15 81127952 81128435 -20252086 + LTR16C LTR ERVL 1 491 0 1074 226 71 100 chr15 81128435 81128864 -20251657 + L1MC5 LINE L1 7523 7931 -30 2080 119 3 3 chr15 81130028 81130323 -20250198 - AluSx SINE Alu -17 295 1 2149 128 0 7 chr15 81130932 81131230 -20249291 + AluSx SINE Alu 1 296 -16 207 69 0 0 chr15 81131369 81131398 -20249123 + (TG)n Simple_repeat Simple_repeat 2 30 0 2227 119 6 6 chr15 81131556 81131868 -20248653 + AluSx SINE Alu 1 312 0 322 302 145 6 chr15 81131890 81132049 -20248472 - MIR SINE MIR -45 217 37 1413 178 4 30 chr15 81132775 81133045 -20247476 + LTR3 LTR ERVK 167 429 -3 337 372 115 16 chr15 81133078 81133653 -20246868 + L2 LINE L2 1707 2338 -976 512 325 74 30 chr15 81133740 81133971 -20246550 + MIR SINE MIR 22 262 0 262 324 143 25 chr15 81134046 81134290 -20246231 + L2 LINE L2 2485 2757 -557 356 38 75 0 chr15 81134842 81134895 -20245626 + AluY SINE Alu 244 300 0 285 269 39 13 chr15 81135077 81135155 -20245366 - L2 LINE L2 -2 3270 3191 21 0 0 0 chr15 81136545 81136566 -20243955 + AT_rich Low_complexity Low_complexity 1 21 0 2304 106 3 0 chr15 81137088 81137391 -20243130 + AluSx SINE Alu 1 304 -8 185 111 56 0 chr15 81137995 81138031 -20242490 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 1101 159 66 31 chr15 81138040 81138266 -20242255 - AluJb SINE Alu -15 297 64 241 250 75 42 chr15 81138269 81138389 -20242132 - L1M LINE L1 -916 5389 5266 734 165 8 16 chr15 81138403 81138530 -20241991 - MER82 DNA MER2_type -527 126 1 274 258 145 6 chr15 81138801 81138960 -20241561 - L1MC/D LINE L1 -1921 5887 5707 653 269 96 23 chr15 81138967 81139186 -20241335 - MIR SINE MIR -13 249 15 397 285 131 7 chr15 81139250 81139387 -20241134 - L1MC/D LINE L1 -478 5643 5490 400 315 51 11 chr15 81139616 81139794 -20240727 - L1ME3A LINE L1 0 6170 5986 2118 157 59 46 chr15 81139815 81140355 -20240166 + MLT1F1 LTR MaLR 1 567 0 1047 290 40 34 chr15 81140510 81141007 -20239514 - L1ME3A LINE L1 -318 5852 5353 745 267 48 50 chr15 81141150 81141476 -20239045 - L1ME LINE L1 -475 5687 5363 2131 129 3 10 chr15 81141476 81141787 -20238734 - AluSx SINE Alu -3 309 1 745 267 48 50 chr15 81141787 81142033 -20238488 - L1ME LINE L1 -799 5363 5118 321 305 150 38 chr15 81142057 81142748 -20237773 - L1ME LINE L1 -1000 5146 4380 2350 61 3 10 chr15 81142971 81143264 -20237257 - AluY SINE Alu -20 291 1 2279 93 3 0 chr15 81143380 81143671 -20236850 - AluSx SINE Alu -20 292 1 875 239 127 54 chr15 81143677 81143877 -20236644 - L2 LINE L2 0 3313 3129 240 35 0 0 chr15 81143877 81143906 -20236615 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 2370 68 0 0 chr15 81143915 81144196 -20236325 - AluSc SINE Alu -28 281 1 875 239 127 54 chr15 81144196 81144538 -20235983 - L2 LINE L2 -191 3122 2706 2091 95 0 59 chr15 81144538 81144842 -20235679 - AluSc SINE Alu -15 294 9 875 239 127 54 chr15 81144842 81144948 -20235573 - L2 LINE L2 -607 2706 2609 2133 45 0 0 chr15 81146867 81147111 -20233410 + L1PA5 LINE L1 5911 6154 0 225 209 0 70 chr15 81148598 81148684 -20231837 + CT-rich Low_complexity Low_complexity 1 80 0 232 227 0 0 chr15 81149673 81149717 -20230804 + L2 LINE L2 3265 3308 -5 416 181 16 145 chr15 81150267 81150545 -20229976 + L1MC4 LINE L1 7825 7995 0 291 149 60 75 chr15 81150803 81150870 -20229651 + MLT1D LTR MaLR 21 86 -419 * 1403 178 83 11 chr15 81150863 81151139 -20229382 + MLT1D LTR MaLR 207 502 -3 1137 201 32 141 chr15 81152144 81152358 -20228163 - L1ME3A LINE L1 -43 6127 5998 2571 127 83 0 chr15 81152358 81152753 -20227768 - MSTA LTR MaLR 0 428 1 1137 201 32 141 chr15 81152753 81153040 -20227481 - L1ME3A LINE L1 -172 5998 5681 2259 121 0 3 chr15 81153140 81153453 -20227068 - AluSx SINE Alu 0 312 1 432 229 90 38 chr15 81153463 81153688 -20226833 - L1ME3A LINE L1 -733 5431 5197 6292 113 6 8 chr15 81153696 81154923 -20225598 - L1PA16 LINE L1 -9 6157 4919 3789 186 10 0 chr15 81154923 81155638 -20224883 - L1 LINE L1 -1300 4846 4125 347 256 44 98 chr15 81155640 81155854 -20224667 - L1ME3A LINE L1 -947 5199 5006 2005 224 67 18 chr15 81155854 81156344 -20224177 - LTR40a LTR ERVL -1 518 5 347 256 44 98 chr15 81156344 81156445 -20224076 - L1ME3A LINE L1 -1140 5006 4901 919 179 3 58 chr15 81156690 81156899 -20223622 + L1MA9 LINE L1 6098 6291 0 406 245 11 0 chr15 81157187 81157281 -20223240 - LTR33A LTR ERVL -3 520 426 269 185 49 25 chr15 81157302 81157383 -20223138 - LTR50 LTR ERVL -183 612 530 236 194 215 90 chr15 81157497 81157641 -20222880 - LTR50 LTR ERVL -633 162 1 366 279 121 23 chr15 81157996 81158211 -20222310 - L2 LINE L2 -1002 2312 2077 192 176 27 40 chr15 81159645 81159719 -20220802 + CT-rich Low_complexity Low_complexity 3 75 0 180 0 0 0 chr15 81159886 81159906 -20220615 + (A)n Simple_repeat Simple_repeat 1 20 0 6416 139 31 12 chr15 81160318 81161285 -20219236 - L1MA4A LINE L1 -3 7002 6055 276 30 0 0 chr15 81161285 81161318 -20219203 + (TG)n Simple_repeat Simple_repeat 2 34 0 6416 139 31 12 chr15 81161318 81162082 -20218439 - L1MA4A LINE L1 -950 6055 5236 4787 117 15 1 chr15 81162082 81162757 -20217764 + L1PA13 LINE L1 5465 6148 -15 6416 139 31 12 chr15 81162757 81163129 -20217392 - L1MA4A LINE L1 -1769 5236 4872 * 13242 173 43 55 chr15 81163127 81166544 -20213977 - L1MA4A LINE L1 -3470 3378 1 445 287 156 79 chr15 81167075 81167791 -20212730 - L2 LINE L2 -26 3246 2471 194 0 0 37 chr15 81167798 81167825 -20212696 + (GA)n Simple_repeat Simple_repeat 1 26 0 324 302 184 34 chr15 81168014 81168537 -20211984 - L2 LINE L2 -846 2468 1868 524 254 120 87 chr15 81168550 81169035 -20211486 - MLT1J LTR MaLR 0 511 11 552 230 209 10 chr15 81169246 81169442 -20211079 - Charlie2 DNA MER1_type -2490 292 58 884 213 68 20 chr15 81169970 81170293 -20210228 + MSTD LTR MaLR 1 396 0 261 163 0 0 chr15 81170322 81170371 -20210150 + CT-rich Low_complexity Low_complexity 2 50 0 36 53 0 0 chr15 81170519 81170576 -20209945 + AT_rich Low_complexity Low_complexity 1 57 0 364 234 9 47 chr15 81170629 81170736 -20209785 + HAL1b LINE L1 413 515 -833 387 314 64 82 chr15 81172263 81172332 -20208189 - HAL1 LINE L1 -1330 1177 1108 2104 122 47 0 chr15 81172332 81172628 -20207893 - AluSg SINE Alu 0 310 1 387 314 64 82 chr15 81172628 81172934 -20207587 - HAL1 LINE L1 -1399 1108 809 460 248 165 0 chr15 81173301 81173434 -20207087 - MIR SINE MIR -2 260 106 2372 209 58 78 chr15 81174296 81175099 -20205422 - L1ME3A LINE L1 -2 6237 5441 1549 204 36 30 chr15 81175099 81175462 -20205059 - MLT1A1 LTR MaLR 0 365 1 2372 209 58 78 chr15 81175462 81175629 -20204892 - L1ME3A LINE L1 -798 5441 5272 268 250 0 0 chr15 81175838 81175902 -20204619 + Charlie1 DNA MER1_type 2698 2761 0 1423 225 116 23 chr15 81175902 81176556 -20203965 - L1ME3A LINE L1 -3128 3087 2373 13439 153 35 25 chr15 81176573 81177262 -20203259 - L1MA3 LINE L1 -5 7719 7038 1887 5 0 0 chr15 81177262 81177466 -20203055 - AluY SINE Alu 0 311 108 13439 153 35 25 chr15 81177466 81180450 -20200071 - L1MA3 LINE L1 -686 7038 4010 5642 116 19 26 chr15 81180457 81181411 -20199110 - L1MA3 LINE L1 -4435 3130 2184 11590 191 21 32 chr15 81231411 81233612 -20146909 - L1MA3 LINE L1 -5376 2189 12 1309 269 81 84 chr15 81233637 81235329 -20145192 - L1ME3A LINE L1 -3987 2409 724 637 137 1 35 chr15 81235952 81236081 -20144440 - L1MD3 LINE L1 -7 8035 7877 365 187 24 98 chr15 81236293 81236332 -20144189 - MER103 DNA DNA -38 128 88 2235 122 3 0 chr15 81236332 81236635 -20143886 - AluSx SINE Alu -8 304 1 365 187 24 98 chr15 81236635 81236718 -20143803 - MER103 DNA DNA -78 88 15 246 279 54 39 chr15 81237480 81237609 -20142912 + L2 LINE L2 2627 2757 -557 282 290 131 8 chr15 81238193 81238438 -20142083 - L1MEd LINE L1 -3085 3044 2770 233 239 104 45 chr15 81238707 81238908 -20141613 - L1MEd LINE L1 -3546 2583 2371 470 154 4 2 chr15 81238946 81239191 -20141330 + AluJo SINE Alu 1 300 -12 259 232 153 16 chr15 81239203 81239393 -20141128 - L1MEd LINE L1 -3795 2334 2119 1080 150 0 46 chr15 81239981 81240154 -20140367 - AluSx SINE Alu -12 298 134 2258 96 7 0 chr15 81240156 81240447 -20140074 - AluSp SINE Alu -20 293 1 1188 66 0 0 chr15 81240496 81240633 -20139888 - AluSx SINE Alu -159 153 17 449 270 121 75 chr15 81240655 81241393 -20139128 - L1MEd LINE L1 -937 1553 701 292 300 20 30 chr15 81242127 81242227 -20138294 + L2 LINE L2 3172 3270 -2 1205 214 118 72 chr15 81242636 81243095 -20137426 - MLT1H LTR MaLR 0 549 70 997 269 193 13 chr15 81243419 81243869 -20136652 - MLT1H LTR MaLR 0 549 19 715 181 62 38 chr15 81244421 81244446 -20136075 + MER20 DNA MER1_type 56 79 -140 264 59 0 0 chr15 81244446 81244480 -20136041 + (TG)n Simple_repeat Simple_repeat 2 35 0 715 181 62 38 chr15 81244480 81244614 -20135907 + MER20 DNA MER1_type 79 219 0 190 275 67 81 chr15 81244623 81244772 -20135749 + L2 LINE L2 2919 3065 -207 364 296 84 7 chr15 81244888 81245030 -20135491 + L2 LINE L2 3159 3311 -2 341 301 112 36 chr15 81246714 81247426 -20133095 + L1M4 LINE L1 2237 3002 -3144 293 242 62 38 chr15 81247462 81247702 -20132819 + L1M4 LINE L1 3073 3318 -2828 404 19 19 0 chr15 81247982 81248035 -20132486 + (CA)n Simple_repeat Simple_repeat 1 54 0 282 237 11 32 chr15 81249068 81249161 -20131360 - L1MC/D LINE L1 -1977 5831 5741 813 144 0 15 chr15 81249473 81249605 -20130916 - AluSg/x SINE Alu -3 307 178 21 0 0 0 chr15 81250903 81250924 -20129597 + AT_rich Low_complexity Low_complexity 1 21 0 237 319 84 0 chr15 81251440 81251559 -20128962 - L2 LINE L2 -6 3307 3179 198 0 0 0 chr15 81251717 81251739 -20128782 + (GA)n Simple_repeat Simple_repeat 2 23 0 * 221 0 0 33 chr15 81251738 81251768 -20128753 + (TG)n Simple_repeat Simple_repeat 1 29 0 1540 194 27 10 chr15 81251845 81252139 -20128382 + AluJo SINE Alu 1 299 -13 211 293 264 0 chr15 81252219 81252325 -20128196 + MER5A DNA MER1_type 56 189 0 230 225 54 135 chr15 81252658 81252769 -20127752 + L2 LINE L2 3086 3187 -85 185 154 26 0 chr15 81253054 81253093 -20127428 + (TG)n Simple_repeat Simple_repeat 2 41 0 2468 89 0 3 chr15 81253322 81253636 -20126885 - AluSp SINE Alu 0 313 1 1088 269 79 73 chr15 81254118 81254255 -20126266 - L1ME4a LINE L1 -2 6119 5984 2037 116 27 3 chr15 81254255 81254548 -20125973 - AluSx SINE Alu -12 300 1 1088 269 79 73 chr15 81254548 81255119 -20125402 - L1ME4a LINE L1 -137 5984 5407 279 324 84 0 chr15 81255298 81255477 -20125044 - L1ME4a LINE L1 -2359 5449 5256 528 314 118 57 chr15 81255578 81256207 -20124314 - L1ME4a LINE L1 -985 5161 4495 257 196 0 0 chr15 81258413 81258464 -20122057 + MER117 DNA MER1_type 97 147 -50 1172 151 45 6 chr15 81258957 81259136 -20121385 + MER5A DNA MER1_type 4 189 0 497 270 52 60 chr15 81259335 81259583 -20120938 - L2 LINE L2 0 3272 3027 220 328 70 41 chr15 81259837 81260108 -20120413 + L2 LINE L2 1397 1675 -1639 382 79 32 0 chr15 81260633 81260696 -20119825 - L1MA2 LINE L1 0 6304 6240 353 311 44 22 chr15 81261423 81261558 -20118963 - L3 LINE CR1 -56 1521 1384 225 268 89 62 chr15 81261948 81262060 -20118461 - L2 LINE L2 0 3313 3199 1301 109 192 0 chr15 81262406 81262496 -20118025 + MER30 DNA MER1_type 1 72 -158 2172 110 20 0 chr15 81262496 81262795 -20117726 - AluSc SINE Alu -4 305 1 1301 109 192 0 chr15 81262795 81262897 -20117624 + MER30 DNA MER1_type 72 230 0 1714 149 36 4 chr15 81262997 81263273 -20117248 - AluJb SINE Alu -22 290 6 24 32 0 0 chr15 81264238 81264269 -20116252 + AT_rich Low_complexity Low_complexity 1 31 0 269 271 0 0 chr15 81265160 81265219 -20115302 + (ATG)n Simple_repeat Simple_repeat 3 61 0 649 214 24 54 chr15 81268045 81268213 -20112308 + MER103 DNA DNA 4 166 0 2339 177 74 35 chr15 81269572 81270058 -20110463 - MLT1D LTR MaLR 0 505 1 183 179 77 0 chr15 81270750 81270789 -20109732 - L2 LINE L2 -22 3250 3209 260 324 43 60 chr15 81271714 81271899 -20108622 - L3 LINE CR1 -230 1347 1166 189 0 0 0 chr15 81273110 81273131 -20107390 + (A)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr15 81273377 81273399 -20107122 + AT_rich Low_complexity Low_complexity 1 22 0 1938 96 17 55 chr15 81273692 81274009 -20106512 - AluSx SINE Alu 0 306 1 2210 102 7 3 chr15 81274541 81274846 -20105675 - AluY SINE Alu -5 306 1 219 277 21 0 chr15 81275491 81275538 -20104983 - L2 LINE L2 -16 3256 3209 1918 176 0 0 chr15 81275785 81276097 -20104424 - AluJo SINE Alu 0 312 1 384 238 97 9 chr15 81276124 81276302 -20104219 - L1MC4a LINE L1 -392 5770 5711 511 247 126 32 chr15 81276341 81276588 -20103933 - L1MC4a LINE L1 -2284 5524 5255 2170 172 16 0 chr15 81276902 81277422 -20103099 - L1MC/D LINE L1 -650 5592 5056 2317 114 0 3 chr15 81277422 81277729 -20102792 - AluSx SINE Alu -6 306 1 2170 172 16 0 chr15 81277729 81277750 -20102771 - L1MC/D LINE L1 -1186 5056 5037 2112 107 40 0 chr15 81278096 81278394 -20102127 - AluY SINE Alu -1 310 1 506 219 91 66 chr15 81278443 81278730 -20101791 - HAL1 LINE L1 -69 2438 2145 355 258 11 0 chr15 81279420 81279513 -20101008 - HAL1 LINE L1 -357 2150 2057 * 2638 217 62 21 chr15 81279485 81280242 -20100279 - L1MC/D LINE L1 -1352 4794 4007 1544 195 0 11 chr15 81280242 81280524 -20099997 - AluJb SINE Alu -12 300 22 36 0 0 0 chr15 81280753 81280789 -20099732 + AT_rich Low_complexity Low_complexity 1 36 0 640 199 66 33 chr15 81281048 81281229 -20099292 - L1MC/D LINE L1 -2155 3991 3805 3021 168 47 12 chr15 81281244 81281707 -20098814 - L1MC3 LINE L1 0 7785 7297 5258 114 7 3 chr15 81281707 81282427 -20098094 + L1PA15 LINE L1 5443 6165 0 3021 168 47 12 chr15 81282427 81282542 -20097979 - L1MC3 LINE L1 -488 7297 7187 850 284 29 18 chr15 81282537 81282879 -20097642 - L1MC/D LINE L1 -2629 3517 3172 * 1876 256 5 9 chr15 81282881 81283436 -20097085 - L1MC/D LINE L1 -3098 3048 2496 207 0 0 0 chr15 81283537 81283560 -20096961 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 776 126 18 0 chr15 81283562 81283673 -20096848 - FLAM_C SINE Alu -26 117 5 22 0 0 0 chr15 81283679 81283701 -20096820 + AT_rich Low_complexity Low_complexity 1 22 0 2237 189 85 19 chr15 81283921 81284393 -20096128 - MLT1D LTR MaLR 0 505 3 199 51 0 51 chr15 81284475 81284514 -20096007 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 2309 86 7 0 chr15 81284527 81284817 -20095704 - AluSq SINE Alu -21 292 1 714 251 123 20 chr15 81285533 81285891 -20094630 - MER113 DNA MER1_type? -45 476 82 9808 152 9 7 chr15 81286115 81288812 -20091709 - L1PB1 LINE L1 -4 6147 3447 425 259 145 41 chr15 81288906 81289190 -20091331 - MLT1J1 LTR MaLR -76 374 60 1894 147 77 48 chr15 81289218 81289571 -20090950 - MLT1A1 LTR MaLR -2 363 1 1869 133 8 0 chr15 81289914 81290178 -20090343 - AluSx SINE Alu -15 297 32 2314 73 3 38 chr15 81290762 81291075 -20089446 + AluSp SINE Alu 1 302 -11 213 247 0 78 chr15 81291416 81291493 -20089028 - MIR SINE MIR -18 244 174 560 204 204 23 chr15 81291546 81291718 -20088803 - MIR SINE MIR 0 262 60 392 376 26 11 chr15 81293549 81293738 -20086783 + MIR3 SINE MIR 5 196 -12 30 45 0 0 chr15 81293804 81293848 -20086673 + AT_rich Low_complexity Low_complexity 1 44 0 208 156 0 0 chr15 81294270 81294302 -20086219 - MER91 DNA MER1_type -76 64 33 771 261 37 63 chr15 81294365 81294670 -20085851 - Charlie8 DNA MER1_type -2157 260 31 333 0 0 0 chr15 81294750 81294787 -20085734 + (TAA)n Simple_repeat Simple_repeat 2 38 0 324 273 53 45 chr15 81295997 81296129 -20084392 + MIR SINE MIR 111 243 -19 1652 175 36 7 chr15 81297161 81297464 -20083057 + AluJb SINE Alu 1 312 0 463 252 128 58 chr15 81297520 81297762 -20082759 + MIR SINE MIR 4 262 0 290 194 14 0 chr15 81297887 81297959 -20082562 + (TA)n Simple_repeat Simple_repeat 2 74 0 225 94 0 0 chr15 81298151 81298183 -20082338 + (TC)n Simple_repeat Simple_repeat 1 32 0 495 0 0 0 chr15 81300527 81300582 -20079939 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 224 316 113 30 chr15 81300665 81300833 -20079688 + MIR3 SINE MIR 15 196 -12 21 0 0 0 chr15 81300926 81300947 -20079574 + AT_rich Low_complexity Low_complexity 1 21 0 288 162 61 6 chr15 81301466 81301579 -20078942 - MER5B DNA MER1_type -2 176 1 2193 120 10 0 chr15 81302217 81302518 -20078003 - AluSx SINE Alu -8 304 1 234 275 116 0 chr15 81302528 81302597 -20077924 + L1P LINE L1 4741 4817 -1329 21 57 0 0 chr15 81302787 81302822 -20077699 + AT_rich Low_complexity Low_complexity 1 35 0 525 87 0 130 chr15 81303094 81303158 -20077363 - MADE1 DNA Mariner 0 80 30 2292 55 41 7 chr15 81303158 81303448 -20077073 - AluY SINE Alu -11 300 1 525 87 0 130 chr15 81303448 81303475 -20077046 - MADE1 DNA Mariner -50 30 1 241 145 32 16 chr15 81303707 81303769 -20076752 + GA-rich Low_complexity Low_complexity 2 64 0 1964 145 3 0 chr15 81304301 81304607 -20075914 + AluSx SINE Alu 1 307 0 14423 123 57 16 chr15 81306153 81306276 -20074245 - Tigger1 DNA MER2_type 0 2418 2302 1202 99 50 35 chr15 81306276 81306477 -20074044 + L1PA10 LINE L1 5947 6150 -18 14423 123 57 16 chr15 81306477 81308648 -20071873 - Tigger1 DNA MER2_type -116 2302 30 898 269 52 8 chr15 81308956 81309205 -20071316 - MIR SINE MIR 0 262 3 718 230 164 18 chr15 81310116 81310405 -20070116 - MLT1H LTR MaLR 0 595 229 2180 84 0 4 chr15 81310701 81310974 -20069547 - AluSq SINE Alu -21 292 21 570 190 9 35 chr15 81311626 81311742 -20068779 + AluJo SINE Alu 67 179 -133 1509 96 0 0 chr15 81311886 81312074 -20068447 + AluSg1 SINE Alu 1 188 -121 309 317 33 0 chr15 81312090 81312210 -20068311 - MIR SINE MIR -43 219 96 180 0 0 0 chr15 81312722 81312742 -20067779 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2229 115 3 0 chr15 81312744 81313039 -20067482 - AluSx SINE Alu -16 296 1 2397 78 0 3 chr15 81314022 81314331 -20066190 + AluY SINE Alu 1 308 -3 378 256 47 52 chr15 81314465 81314637 -20065884 - MER5B DNA MER1_type -1 177 7 2858 215 110 58 chr15 81315300 81315368 -20065153 + L1ME LINE L1 4127 4190 -1956 2112 135 0 13 chr15 81315368 81315680 -20064841 + AluSx SINE Alu 1 308 -4 2858 215 110 58 chr15 81315680 81316447 -20064074 + L1ME LINE L1 4190 4916 -1230 1657 197 0 0 chr15 81316447 81316750 -20063771 + AluJo SINE Alu 3 305 0 2858 215 110 58 chr15 81316750 81316808 -20063713 + L1ME LINE L1 4916 4970 -1176 2808 116 3 0 chr15 81316808 81317171 -20063350 + THE1B LTR MaLR 1 364 0 2858 215 110 58 chr15 81317171 81317340 -20063181 + L1ME LINE L1 4970 5247 -899 2547 101 26 32 chr15 81317340 81317717 -20062804 - THE1C LTR MaLR 0 375 1 10208 105 37 17 chr15 81317717 81319216 -20061305 - THE1C-int LTR MaLR 0 1580 52 646 149 18 9 chr15 81319216 81319330 -20061191 - LTR36 LTR ERV1 -352 259 145 2461 124 36 6 chr15 81319365 81319729 -20060792 - THE1C LTR MaLR 0 375 1 1044 210 50 12 chr15 81319730 81320021 -20060500 + L1ME LINE L1 5244 5562 -602 3410 161 35 31 chr15 81320181 81320790 -20059731 + LTR36 LTR ERV1 1 611 0 766 288 125 27 chr15 81320925 81321332 -20059189 - MLT1J LTR MaLR -64 447 1 745 0 48 0 chr15 81321601 81321706 -20058815 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 2223 97 0 17 chr15 81322406 81322706 -20057815 - AluSq SINE Alu -18 295 1 687 254 134 66 chr15 81322761 81323477 -20057044 - L1ME4a LINE L1 0 6121 5357 213 121 0 0 chr15 81323608 81323641 -20056880 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr15 81323915 81323943 -20056578 + AT_rich Low_complexity Low_complexity 1 28 0 6734 164 74 38 chr15 81324011 81326207 -20054314 - L1MA8 LINE L1 -138 6217 3932 2676 201 78 3 chr15 81327107 81327744 -20052777 - L1MA8 LINE L1 -2286 3924 3240 * 5016 266 72 21 chr15 81327727 81328488 -20052033 - L1MA8 LINE L1 -4174 2037 1316 2062 129 3 16 chr15 81328488 81328791 -20051730 - AluSx SINE Alu -13 299 1 5016 266 72 21 chr15 81328791 81330260 -20050261 - L1MA8 LINE L1 -4895 1316 1 418 325 112 57 chr15 81331532 81332073 -20048448 + L2 LINE L2 2199 2834 -480 2010 116 36 23 chr15 81332073 81332376 -20048145 - AluJb SINE Alu -5 307 1 418 325 112 57 chr15 81332376 81332410 -20048111 + L2 LINE L2 2834 2865 -449 781 259 126 28 chr15 81332422 81332817 -20047704 - MLT1J2 LTR MaLR 0 511 1 311 266 0 0 chr15 81332821 81332885 -20047636 - MLT1E LTR MaLR -529 64 1 1913 164 0 10 chr15 81333031 81333342 -20047179 - AluJb SINE Alu -4 308 1 291 273 68 11 chr15 81333594 81333682 -20046839 + L2 LINE L2 3163 3255 -17 2334 80 7 13 chr15 81334865 81335165 -20045356 - AluSg SINE Alu -12 298 1 246 360 53 18 chr15 81335194 81335308 -20045213 - MIR SINE MIR -70 138 21 636 255 64 59 chr15 81336046 81336434 -20044087 + LTR16A1 LTR ERVL 3 392 -65 2166 120 3 3 chr15 81336484 81336783 -20043738 - AluSx SINE Alu -13 299 1 636 253 32 7 chr15 81338235 81338389 -20042132 + MIR SINE MIR 98 255 -7 357 200 14 0 chr15 81338432 81338502 -20042019 - MER82 DNA MER2_type -1 652 582 2605 124 17 20 chr15 81338503 81338906 -20041615 + MER57A LTR ERV1 2 403 0 * 2655 213 41 15 chr15 81338906 81339473 -20041048 - MER82 DNA MER2_type -71 582 1 261 283 178 7 chr15 81339760 81339912 -20040609 + MIR SINE MIR 12 189 -73 346 277 121 97 chr15 81340277 81341027 -20039494 - L1M2 LINE L1 -5562 1287 525 23 33 0 0 chr15 81341125 81341155 -20039366 + GC_rich Low_complexity Low_complexity 1 30 0 382 263 53 26 chr15 81342147 81342261 -20038260 + MIR SINE MIR 16 132 -76 629 278 29 12 chr15 81343312 81343485 -20037036 - Charlie8 DNA MER1_type -2155 262 87 349 253 121 22 chr15 81343577 81343668 -20036853 - MER91A DNA MER1_type -1 195 96 520 211 78 83 chr15 81344361 81344565 -20035956 + MIR SINE MIR 52 254 -8 1926 153 4 0 chr15 81345013 81345317 -20035204 - AluSx SINE Alu 0 305 1 2147 195 116 11 chr15 81346508 81346965 -20033556 + MLT1D LTR MaLR 1 505 0 8254 27 0 0 chr15 81347609 81348574 -20031947 - L1PA2 LINE L1 -912 5234 4270 8373 12 3 0 chr15 81348574 81349520 -20031001 + L1PA2 LINE L1 5235 6183 0 236 196 49 186 chr15 81350244 81350448 -20030073 - L1ME LINE L1 -299 5822 5647 215 111 0 44 chr15 81351149 81351194 -20029327 + (TTTTC)n Simple_repeat Simple_repeat 4 46 0 1161 204 5 9 chr15 81351610 81351830 -20028691 + AluJo SINE Alu 5 223 -89 278 290 40 8 chr15 81353079 81353203 -20027318 - L1ME LINE L1 -244 6271 6144 225 290 14 0 chr15 81353244 81353313 -20027208 - L1ME LINE L1 -490 6025 5956 1748 180 3 16 chr15 81353465 81353776 -20026745 + AluJo SINE Alu 1 307 -5 23 68 0 0 chr15 81354068 81354112 -20026409 + AT_rich Low_complexity Low_complexity 1 44 0 180 0 0 0 chr15 81354426 81354446 -20026075 + (T)n Simple_repeat Simple_repeat 1 20 0 293 257 99 40 chr15 81355203 81355355 -20025166 - HAL1b LINE L1 -854 494 334 21 57 0 0 chr15 81355371 81355406 -20025115 + AT_rich Low_complexity Low_complexity 1 35 0 358 322 116 34 chr15 81355730 81355963 -20024558 - MLT1I LTR MaLR -117 292 41 2212 105 0 0 chr15 81356057 81356352 -20024169 - AluSg SINE Alu -15 295 1 2572 55 0 3 chr15 81356363 81356675 -20023846 - AluY SINE Alu 0 311 1 224 195 24 0 chr15 81356732 81356773 -20023748 - MIR SINE MIR -213 49 8 2396 101 3 0 chr15 81356883 81357189 -20023332 + AluSx SINE Alu 1 307 -5 562 173 78 133 chr15 81357335 81357606 -20022915 + MER112 DNA MER1_type 1 256 0 556 335 60 7 chr15 81357826 81358095 -20022426 - L1 LINE L1 -2239 3907 3625 22 35 0 0 chr15 81358355 81358384 -20022137 + AT_rich Low_complexity Low_complexity 1 29 0 4926 223 84 87 chr15 81360830 81362085 -20018436 - L1MDb LINE L1 -860 5680 4423 723 211 0 0 chr15 81362085 81362208 -20018313 + LTR53 LTR ERVL 4 126 -393 4926 223 84 87 chr15 81362208 81363240 -20017281 - L1MDb LINE L1 -2117 4423 3389 1967 172 30 48 chr15 81363240 81363303 -20017218 + MLT1A1 LTR MaLR 1 64 -301 2313 96 0 0 chr15 81363303 81363606 -20016915 + AluY SINE Alu 1 303 -8 1967 172 30 48 chr15 81363606 81363914 -20016607 + MLT1A1 LTR MaLR 64 365 0 4926 223 84 87 chr15 81363914 81365625 -20014896 - L1MDb LINE L1 -3151 3389 1557 461 99 58 0 chr15 81365646 81365767 -20014754 + (TA)n Simple_repeat Simple_repeat 2 129 0 24 0 0 0 chr15 81365815 81365839 -20014682 + AT_rich Low_complexity Low_complexity 1 24 0 2571 267 93 66 chr15 81365839 81367342 -20013179 - L1MDb LINE L1 -4987 1553 34 365 263 106 25 chr15 81367426 81367586 -20012935 - HAL1b LINE L1 -1104 244 72 612 290 34 12 chr15 81368027 81368333 -20012188 - MLT1I LTR MaLR -2 407 52 288 0 0 0 chr15 81368438 81368470 -20012051 + (TG)n Simple_repeat Simple_repeat 1 32 0 829 166 7 41 chr15 81369444 81369589 -20010932 - AluJb SINE Alu -37 275 136 180 298 138 11 chr15 81369708 81369802 -20010719 - L3 LINE CR1 -775 802 697 376 306 148 19 chr15 81369908 81370230 -20010291 + L3 LINE CR1 602 963 -614 3003 198 86 29 chr15 81370445 81371212 -20009309 - MER21B LTR ERV1 -1 862 52 323 257 14 0 chr15 81371217 81371291 -20009230 - MER21B LTR ERV1 -769 94 20 338 278 0 11 chr15 81371315 81371405 -20009116 - MER21B LTR ERV1 -774 89 1 1809 303 119 29 chr15 81371980 81372317 -20008204 + L2 LINE L2 1867 2172 -1141 198 0 0 0 chr15 81372317 81372339 -20008182 + (CATA)n Simple_repeat Simple_repeat 2 23 0 1809 303 119 29 chr15 81372339 81373333 -20007188 + L2 LINE L2 2172 3310 -3 212 305 9 67 chr15 81373462 81373567 -20006954 + L2 LINE L2 2871 2969 -344 353 252 26 43 chr15 81373586 81373691 -20006830 + MIR3 SINE MIR 95 199 -9 2217 117 0 7 chr15 81373691 81373999 -20006522 + AluSx SINE Alu 1 306 -6 2210 125 14 8 chr15 81374681 81375034 -20005487 + THE1A LTR MaLR 1 355 0 11768 96 5 0 chr15 81375034 81376606 -20003915 + THE1A-int LTR MaLR 1 1579 -1 2257 103 9 9 chr15 81376607 81376956 -20003565 + THE1A LTR MaLR 1 349 -6 454 183 50 8 chr15 81377041 81377161 -20003360 + L1ME4a LINE L1 5967 6091 -30 180 179 0 0 chr15 81377213 81377252 -20003269 + A-rich Low_complexity Low_complexity 1 39 0 366 91 0 0 chr15 81378154 81378209 -20002312 + (TG)n Simple_repeat Simple_repeat 2 56 0 1666 151 6 89 chr15 81379840 81380178 -20000343 - AluJb SINE Alu -2 310 1 711 226 124 40 chr15 81380305 81380531 -19999990 + MIR SINE MIR 18 262 0 1157 215 6 54 chr15 81380649 81380984 -19999537 - L1ME3 LINE L1 -1 6161 5843 261 347 127 35 chr15 81381754 81381927 -19998594 + MIR3 SINE MIR 2 190 -18 328 269 94 82 chr15 81382025 81382196 -19998325 - MIR3 SINE MIR -3 205 33 424 217 139 0 chr15 81384009 81384124 -19996397 - MIR3 SINE MIR -13 195 65 25 51 0 0 chr15 81384213 81384252 -19996269 + AT_rich Low_complexity Low_complexity 1 39 0 442 317 32 18 chr15 81385535 81385756 -19994765 + L2 LINE L2 337 560 -2754 182 233 52 145 chr15 81387656 81387849 -19992672 + L2 LINE L2 2932 3106 -166 299 229 0 0 chr15 81387860 81387921 -19992600 + CT-rich Low_complexity Low_complexity 4 64 0 225 262 0 38 chr15 81387959 81388142 -19992379 + CT-rich Low_complexity Low_complexity 1 176 0 292 181 67 0 chr15 81388627 81388732 -19991789 + CT-rich Low_complexity Low_complexity 1 112 0 818 155 6 22 chr15 81388748 81388929 -19991592 + CT-rich Low_complexity Low_complexity 3 180 0 384 248 80 64 chr15 81389517 81389642 -19990879 + L2 LINE L2 3137 3263 -9 252 322 72 17 chr15 81389641 81389821 -19990700 + L2 LINE L2 2714 2903 -411 * 2119 112 30 3 chr15 81390197 81390321 -19990200 + AluSq SINE Alu 1 120 -193 189 0 0 0 chr15 81390321 81390342 -19990179 + (CA)n Simple_repeat Simple_repeat 2 22 0 2119 112 30 3 chr15 81390342 81390521 -19990000 + AluSq SINE Alu 120 312 -1 251 28 28 0 chr15 81390585 81390621 -19989900 + (TG)n Simple_repeat Simple_repeat 2 38 0 204 329 101 0 chr15 81391153 81391232 -19989289 - L2 LINE L2 -2 3270 3184 561 138 32 0 chr15 81391402 81391496 -19989025 + U6 snRNA snRNA 1 97 -10 22 0 0 0 chr15 81391665 81391687 -19988834 + AT_rich Low_complexity Low_complexity 1 22 0 2637 215 68 88 chr15 81392016 81392397 -19988124 + L1MC5 LINE L1 6542 6929 -1032 1941 129 52 7 chr15 81392397 81392684 -19987837 + AluSx SINE Alu 1 300 -12 2637 215 68 88 chr15 81392684 81393700 -19986821 + L1MC5 LINE L1 6929 7911 -50 234 340 62 10 chr15 81393798 81393895 -19986626 - MIR SINE MIR -65 143 42 2055 144 3 13 chr15 81393913 81394226 -19986295 + AluSx SINE Alu 1 310 -2 24 53 0 0 chr15 81395077 81395115 -19985406 + AT_rich Low_complexity Low_complexity 1 38 0 2279 113 0 0 chr15 81395704 81396006 -19984515 - AluSg SINE Alu -8 302 1 665 301 120 27 chr15 81397172 81397840 -19982681 + L1ME4a LINE L1 5386 6115 -6 30 0 0 0 chr15 81398041 81398071 -19982450 + AT_rich Low_complexity Low_complexity 1 30 0 2207 115 13 3 chr15 81398073 81398377 -19982144 - AluSc SINE Alu -2 307 1 6105 93 12 8 chr15 81398387 81399315 -19981206 - L1MA3 LINE L1 0 7724 6793 349 151 0 0 chr15 81399315 81399368 -19981153 - FLAM_A SINE Alu -60 72 20 14023 149 24 7 chr15 81399368 81404016 -19976505 - L1MA3 LINE L1 -985 6580 1855 2682 190 10 25 chr15 81404599 81405209 -19975312 - L1MA9 LINE L1 -839 5307 4707 * 4728 137 75 32 chr15 81405204 81406141 -19974380 + L1MA9 LINE L1 5303 6279 -33 232 339 161 0 chr15 81407154 81407266 -19973255 - L2 LINE L2 -2 3270 3141 200 222 19 19 chr15 81408884 81408938 -19971583 - L3 LINE CR1 -100 1477 1424 180 97 0 0 chr15 81409640 81409671 -19970850 + (TTTTTG)n Simple_repeat Simple_repeat 1 31 0 26 0 0 0 chr15 81410225 81410251 -19970270 + AT_rich Low_complexity Low_complexity 1 26 0 251 330 52 54 chr15 81411230 81411275 -19969246 + HAL1 LINE L1 1233 1277 -1230 1927 130 63 28 chr15 81411275 81411637 -19968884 + THE1C LTR MaLR 1 375 0 251 330 52 54 chr15 81411637 81411997 -19968524 + HAL1 LINE L1 1277 1637 -870 29 47 0 0 chr15 81412522 81412565 -19967956 + AT_rich Low_complexity Low_complexity 1 43 0 2127 134 0 7 chr15 81412589 81412888 -19967633 + AluSx SINE Alu 1 297 -15 212 59 29 0 chr15 81412925 81412959 -19967562 + (TAAAA)n Simple_repeat Simple_repeat 3 37 0 243 302 72 13 chr15 81413062 81413297 -19967224 + L1M4 LINE L1 2140 2388 -3758 1841 132 3 6 chr15 81413328 81413639 -19966882 + MER46B DNA MER2_type 52 236 0 254 295 140 45 chr15 81414182 81415155 -19965366 + L1M4 LINE L1 2678 3742 -2404 39 38 0 0 chr15 81415177 81415230 -19965291 + AT_rich Low_complexity Low_complexity 1 53 0 309 315 157 25 chr15 81415270 81415505 -19965016 + L1M4 LINE L1 3787 4052 -2094 318 325 60 0 chr15 81415537 81415688 -19964833 + L1M4 LINE L1 4157 4316 -1830 1336 159 147 8 chr15 81415691 81415942 -19964579 + AluJo SINE Alu 1 286 -26 635 303 94 47 chr15 81415968 81416605 -19963916 + L1MD1 LINE L1 2639 3305 -2841 713 150 68 15 chr15 81417232 81417365 -19963156 - THE1C LTR MaLR -235 140 1 949 191 0 5 chr15 81417365 81417559 -19962962 + MLT1D LTR MaLR 313 505 0 419 236 229 7 chr15 81417642 81417782 -19962739 + MER5A DNA MER1_type 18 188 -1 430 324 51 33 chr15 81417806 81418082 -19962439 + L1ME3A LINE L1 5684 5962 -208 353 254 17 8 chr15 81418681 81418799 -19961722 + L1MD1 LINE L1 4697 4815 -1331 * 4369 184 42 6 chr15 81418788 81419751 -19960770 + L1MD1 LINE L1 5216 6215 -27 1261 144 0 6 chr15 81419762 81419942 -19960579 - AluSg/x SINE Alu -27 285 107 407 278 109 60 chr15 81420098 81420382 -19960139 + L1M4 LINE L1 3813 4110 -2036 899 255 20 7 chr15 81420387 81420685 -19959836 + L1M4 LINE L1 4180 4481 -1665 4606 124 45 56 chr15 81420693 81421269 -19959252 + L1M2 LINE L1 4404 4985 -1306 2416 69 3 7 chr15 81421269 81421574 -19958947 + AluY SINE Alu 2 305 -6 4606 124 45 56 chr15 81421574 81422202 -19958319 + L1M2 LINE L1 4985 5616 -675 1843 100 4 0 chr15 81422206 81422445 -19958076 + AluSx SINE Alu 14 253 -59 2188 79 24 7 chr15 81422566 81422858 -19957663 - AluY SINE Alu -14 297 1 21 36 0 0 chr15 81423156 81423184 -19957337 + AT_rich Low_complexity Low_complexity 1 28 0 1497 111 75 7 chr15 81423184 81423464 -19957057 - L1MA8 LINE L1 -6 6285 5987 1420 206 127 102 chr15 81423589 81424322 -19956199 + LTR1B LTR ERV1 2 752 -74 322 228 144 21 chr15 81424734 81424902 -19955619 - MLT1L LTR MaLR -131 484 216 226 185 0 0 chr15 81425102 81425156 -19955365 - Charlie8 DNA MER1_type -2274 143 90 2479 63 0 3 chr15 81425156 81425457 -19955064 - AluY SINE Alu -11 300 1 361 310 121 32 chr15 81425696 81425977 -19954544 + L2 LINE L2 2444 2749 -565 963 241 74 39 chr15 81425991 81426422 -19954099 + LTR33 LTR ERVL 1 446 -75 2203 113 3 0 chr15 81428077 81428378 -19952143 + AluSx SINE Alu 1 302 -10 234 253 63 13 chr15 81428406 81428485 -19952036 + MIR SINE MIR 110 192 -70 605 258 143 0 chr15 81429182 81429364 -19951157 + L3 LINE CR1 637 844 -733 206 255 245 0 chr15 81429483 81429589 -19950932 - MIR SINE MIR -52 210 79 210 294 54 33 chr15 81429746 81429838 -19950683 + L3 LINE CR1 1075 1168 -409 192 271 229 21 chr15 81429872 81429968 -19950553 + L3 LINE CR1 1262 1377 -200 25 31 0 0 chr15 81431034 81431066 -19949455 + AT_rich Low_complexity Low_complexity 1 32 0 597 308 66 76 chr15 81431541 81431583 -19948938 + L1ME3 LINE L1 57 98 -6021 432 55 0 0 chr15 81431583 81431638 -19948883 + (CAA)n Simple_repeat Simple_repeat 2 56 0 597 308 66 76 chr15 81431638 81432304 -19948217 + L1ME3 LINE L1 98 758 -5361 380 304 0 29 chr15 81432444 81432582 -19947939 + L1ME3 LINE L1 4019 4152 -1977 276 239 0 11 chr15 81432843 81432931 -19947590 + L1ME3 LINE L1 4476 4562 -1567 329 321 54 30 chr15 81433075 81433679 -19946842 + L1ME3 LINE L1 4792 5433 -720 1838 145 41 14 chr15 81433679 81433969 -19946552 + AluSx SINE Alu 1 298 -14 329 321 54 30 chr15 81433969 81434275 -19946246 + L1ME3 LINE L1 5433 5730 -423 276 250 49 30 chr15 81434328 81434492 -19946029 + L1ME3 LINE L1 5740 5906 -239 2522 71 0 3 chr15 81434874 81435183 -19945338 + AluSg SINE Alu 1 308 -2 27 0 0 0 chr15 81435849 81435876 -19944645 + AT_rich Low_complexity Low_complexity 1 27 0 184 152 43 22 chr15 81436541 81436587 -19943934 + L2 LINE L2 3267 3313 0 923 193 6 12 chr15 81437064 81437225 -19943296 + FRAM SINE Alu 1 154 -22 1885 173 3 10 chr15 81438717 81439024 -19941497 + AluJb SINE Alu 1 305 -7 218 205 0 0 chr15 81439036 81439075 -19941446 + GA-rich Low_complexity Low_complexity 2 40 0 860 264 37 11 chr15 81439248 81439517 -19941004 - LTR16A LTR ERVL 0 450 175 331 319 49 14 chr15 81439626 81439770 -19940751 - LTR16A LTR ERVL -281 169 21 274 311 64 45 chr15 81439875 81440139 -19940382 - L2 LINE L2 -456 2858 2590 340 279 174 25 chr15 81440143 81440304 -19940217 + MIR3 SINE MIR 18 202 -6 2430 73 0 0 chr15 81440914 81441201 -19939320 - AluSc SINE Alu -22 287 1 405 356 176 15 chr15 81441316 81441577 -19938944 - L2 LINE L2 0 3272 2970 388 255 34 34 chr15 81442170 81442319 -19938202 - L1MEc LINE L1 -2564 3651 3503 2280 255 112 73 chr15 81442328 81443238 -19937283 + HAL1 LINE L1 186 1059 -1448 2253 115 0 6 chr15 81443238 81443552 -19936969 + AluSx SINE Alu 1 312 0 2280 255 112 73 chr15 81443552 81444826 -19935695 + HAL1 LINE L1 1059 2503 -4 209 241 224 17 chr15 81445568 81445626 -19934895 - L2 LINE L2 -217 3055 2986 1539 114 39 0 chr15 81445771 81446026 -19934495 + L1MA3 LINE L1 6035 6299 -6 955 148 0 0 chr15 81446074 81446209 -19934312 + AluSq/x SINE Alu 3 137 -175 2058 132 14 0 chr15 81446211 81446500 -19934021 + AluSx SINE Alu 5 297 -15 326 334 66 45 chr15 81446539 81447066 -19933455 + HAL1b LINE L1 69 606 -742 702 248 143 0 chr15 81447086 81447247 -19933274 + MER5A DNA MER1_type 4 187 -2 21 0 0 0 chr15 81447615 81447636 -19932885 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr15 81448482 81448511 -19932010 + (CA)n Simple_repeat Simple_repeat 2 30 0 368 239 63 69 chr15 81448535 81448694 -19931827 - L1MEc LINE L1 -3047 3168 3011 631 290 49 14 chr15 81448696 81449292 -19931229 - L1MEc LINE L1 -3757 2477 1887 230 81 27 0 chr15 81449306 81449343 -19931178 + (TA)n Simple_repeat Simple_repeat 1 38 0 318 252 0 54 chr15 81449345 81449456 -19931065 + L1MC4 LINE L1 6614 6718 -1324 6831 176 38 7 chr15 81449463 81449859 -19930662 - L1PA13 LINE L1 -8 6155 5773 2002 142 0 10 chr15 81449859 81450154 -19930367 - AluSx SINE Alu -20 292 1 6831 176 38 7 chr15 81450154 81451919 -19928602 - L1PA13 LINE L1 -390 5773 3957 2263 110 7 0 chr15 81451921 81452221 -19928300 - AluSq SINE Alu -11 302 1 1292 152 25 7 chr15 81452221 81452497 -19928024 - L1PA13 LINE L1 -2956 3190 2910 28 0 0 0 chr15 81452521 81452549 -19927972 + AT_rich Low_complexity Low_complexity 1 28 0 2160 116 14 0 chr15 81453629 81453923 -19926598 + AluSq SINE Alu 1 298 -15 192 325 144 31 chr15 81454371 81454531 -19925990 - L3 LINE CR1 -214 1363 1186 299 111 74 0 chr15 81455355 81455409 -19925112 - AluSp/q SINE Alu -5 298 241 7172 187 39 18 chr15 81455524 81455573 -19924948 - L1PA13 LINE L1 -3315 3482 3436 2568 71 0 0 chr15 81455573 81455882 -19924639 - AluY SINE Alu -2 309 1 7172 187 39 18 chr15 81455882 81458345 -19922176 - L1PA13 LINE L1 -3361 3436 897 278 336 20 60 chr15 81458403 81458552 -19921969 + L2 LINE L2 2921 3063 -250 2354 92 3 0 chr15 81458569 81458863 -19921658 - AluSp SINE Alu -18 295 1 284 226 60 0 chr15 81458883 81458967 -19921554 + L2 LINE L2 3152 3240 -73 1351 133 10 0 chr15 81459653 81459849 -19920672 + AluSg/x SINE Alu 103 300 -10 361 272 52 31 chr15 81460175 81460366 -19920155 + L1M4 LINE L1 4458 4652 -1494 1953 143 13 13 chr15 81460399 81460707 -19919814 + AluSx SINE Alu 1 308 -4 3041 149 33 6 chr15 81460730 81461279 -19919242 + L1MB1 LINE L1 5605 6168 0 26 0 0 0 chr15 81461359 81461385 -19919136 + AT_rich Low_complexity Low_complexity 1 26 0 1992 137 7 13 chr15 81461457 81461764 -19918757 - AluY SINE Alu -5 306 2 27 62 0 0 chr15 81462719 81462767 -19917754 + AT_rich Low_complexity Low_complexity 1 48 0 204 125 0 0 chr15 81462820 81462852 -19917669 + (CA)n Simple_repeat Simple_repeat 1 32 0 505 224 0 0 chr15 81462930 81463037 -19917484 + MER3 DNA MER1_type 7 113 -96 328 290 21 11 chr15 81463205 81463298 -19917223 + L2 LINE L2 2974 3067 -205 874 147 96 6 chr15 81464374 81464551 -19915970 - MER20 DNA MER1_type -3 216 24 794 268 78 12 chr15 81464831 81465253 -19915268 - HAL1b LINE L1 -2 1346 897 520 227 108 22 chr15 81465261 81465530 -19914991 - HAL1b LINE L1 -499 849 558 4723 145 8 52 chr15 81465578 81466094 -19914427 - L1MB3 LINE L1 -8 6175 5638 2089 120 7 23 chr15 81466094 81466395 -19914126 - AluSx SINE Alu -16 296 1 4723 145 8 52 chr15 81466395 81466561 -19913960 - L1MB3 LINE L1 -545 5638 5466 2314 124 17 11 chr15 81466561 81466923 -19913598 - THE1B LTR MaLR 0 364 1 11543 86 11 8 chr15 81466923 81468498 -19912023 - THE1B-int LTR MaLR 0 1580 1 2435 130 14 8 chr15 81468498 81468860 -19911661 - THE1B LTR MaLR 0 364 1 4723 145 8 52 chr15 81468860 81469252 -19911269 - L1MB3 LINE L1 -714 5469 5144 518 243 90 6 chr15 81469251 81469428 -19911093 - HAL1b LINE L1 -807 541 350 * 2447 68 0 0 chr15 81469565 81469860 -19910661 - AluY SINE Alu -16 295 1 471 250 120 5 chr15 81469911 81470119 -19910402 - LTR16A1 LTR ERVL -2 455 224 1184 273 113 22 chr15 81470170 81471883 -19908638 - L1MEc LINE L1 -2750 3465 1611 1127 133 0 0 chr15 81472393 81472551 -19907970 - AluSc SINE Alu -17 292 135 409 161 35 0 chr15 81472707 81472794 -19907727 - MSTD LTR MaLR 0 396 307 552 65 0 0 chr15 81473797 81473874 -19906647 + (TA)n Simple_repeat Simple_repeat 2 78 0 28 0 0 0 chr15 81474477 81474505 -19906016 + AT_rich Low_complexity Low_complexity 1 28 0 1862 221 43 10 chr15 81474506 81475021 -19905500 + L1ME1 LINE L1 5617 6148 -18 536 130 22 0 chr15 81475069 81475161 -19905360 + L1MB2 LINE L1 6071 6164 -7 246 242 11 11 chr15 81475200 81475291 -19905230 + L1ME LINE L1 5790 5880 -241 1016 168 0 0 chr15 81478372 81478533 -19901988 + FAM SINE Alu 1 45 -4 1098 270 80 19 chr15 81478536 81479174 -19901347 - L1ME3A LINE L1 -239 5931 5255 498 235 13 39 chr15 81479244 81479397 -19901124 + L2 LINE L2 3165 3313 0 359 315 0 9 chr15 81479407 81479515 -19901006 - L1ME3A LINE L1 -1008 5138 5032 381 297 44 28 chr15 81479599 81479781 -19900740 + MIR SINE MIR 63 247 -15 1397 162 12 72 chr15 81480761 81480847 -19899674 - MER33 DNA MER1_type -2261 324 234 1355 214 62 0 chr15 81480847 81480960 -19899561 + AluJo SINE Alu 5 110 -202 279 0 0 0 chr15 81480960 81480991 -19899530 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1355 214 62 0 chr15 81480991 81481153 -19899368 + AluJo SINE Alu 110 297 -15 1397 162 12 72 chr15 81481153 81481411 -19899110 - MER33 DNA MER1_type -2351 234 1 514 287 82 63 chr15 81481856 81482173 -19898348 + HAL1 LINE L1 1090 1412 -1095 1018 164 9 14 chr15 81482181 81482394 -19898127 + L1M4 LINE L1 995 1206 -5336 366 123 0 0 chr15 81482674 81482731 -19897790 + (CA)n Simple_repeat Simple_repeat 2 58 0 1989 119 3 46 chr15 81482754 81483057 -19897464 - AluJb SINE Alu -22 290 1 577 224 112 0 chr15 81483402 81483572 -19896949 - L1ME3A LINE L1 -233 5937 5749 283 284 35 83 chr15 81483576 81483949 -19896572 - L1ME3A LINE L1 -2368 3778 3424 264 307 96 84 chr15 81484074 81484682 -19895839 + L2 LINE L2 2589 3221 -51 210 393 18 12 chr15 81485243 81485406 -19895115 - MIR3 SINE MIR -26 182 19 2302 104 13 0 chr15 81485539 81485847 -19894674 - AluSq SINE Alu 0 313 2 2428 75 3 3 chr15 81486338 81486644 -19893877 + AluY SINE Alu 1 306 -5 207 139 0 0 chr15 81486992 81487028 -19893493 + (T)n Simple_repeat Simple_repeat 1 36 0 781 254 99 24 chr15 81487553 81487805 -19892716 + L2 LINE L2 3043 3313 0 408 157 34 34 chr15 81489005 81489183 -19891338 + (TG)n Simple_repeat Simple_repeat 1 178 0 212 157 48 41 chr15 81489230 81489380 -19891141 + (TG)n Simple_repeat Simple_repeat 1 151 0 894 149 0 0 chr15 81539420 81539944 -19840577 + (GAATG)n Satellite Satellite 1 524 0 1008 143 0 0 chr15 81539955 81540209 -19840312 + (GAATG)n Satellite Satellite 1 254 0 715 151 0 27 chr15 81540232 81540417 -19840104 + (GAATG)n Satellite Satellite 1 180 0 419 313 0 0 chr15 81540944 81541078 -19839443 - MER94 DNA DNA 0 134 1 249 236 34 34 chr15 81541152 81541241 -19839280 - L2 LINE L2 -2010 1304 1216 1003 296 17 11 chr15 81541456 81541811 -19838710 - LTR16B LTR ERVL 0 464 108 1363 85 0 0 chr15 81541932 81542096 -19838425 + AluSc SINE Alu 7 170 -139 927 134 0 0 chr15 81542213 81542392 -19838129 + (CATTC)n Satellite Satellite 1 179 0 1068 111 0 0 chr15 81542432 81542612 -19837909 + (CATTC)n Satellite Satellite 1 180 0 731 152 0 27 chr15 81542637 81542821 -19837700 + (CATTC)n Satellite Satellite 1 179 0 972 143 0 41 chr15 81542832 81543377 -19837144 + (CATTC)n Satellite Satellite 1 360 0 948 166 0 27 chr15 81543421 81543937 -19836584 + (CATTC)n Satellite Satellite 5 350 0 972 128 0 0 chr15 81543968 81544147 -19836374 + (CATTC)n Satellite Satellite 2 180 0 1296 67 0 0 chr15 81544192 81544372 -19836149 + (CATTC)n Satellite Satellite 1 180 0 909 90 5 53 chr15 81544397 81544585 -19835936 + (CATTC)n Satellite Satellite 1 179 0 720 171 0 0 chr15 81544597 81544816 -19835705 + (CATTC)n Satellite Satellite 1 219 0 1047 134 0 0 chr15 81544857 81545210 -19835311 + (CATTC)n Satellite Satellite 1 353 0 1104 133 0 7 chr15 81545222 81545513 -19835008 + (CATTC)n Satellite Satellite 2 290 0 869 148 0 9 chr15 81545524 81546051 -19834470 + (CATTC)n Satellite Satellite 1 522 0 685 162 0 27 chr15 81546081 81546266 -19834255 + (CATTC)n Satellite Satellite 1 180 0 1035 121 0 36 chr15 81546277 81546648 -19833873 + (CATTC)n Satellite Satellite 2 358 0 825 153 0 19 chr15 81546698 81547235 -19833286 + (CATTC)n Satellite Satellite 1 526 0 1026 143 0 0 chr15 81547376 81547675 -19832846 + (GAATG)n Satellite Satellite 1 299 0 1050 112 0 0 chr15 81547691 81547869 -19832652 + (GAATG)n Satellite Satellite 3 180 0 1110 142 0 3 chr15 81547899 81548406 -19832115 + (GAATG)n Satellite Satellite 2 684 0 843 144 0 0 chr15 81548419 81548586 -19831935 + (GAATG)n Satellite Satellite 1 167 0 943 111 7 5 chr15 81548707 81548925 -19831596 + (CATTC)n Satellite Satellite 3 180 0 459 182 0 0 chr15 81548941 81549062 -19831459 + (CATTC)n Satellite Satellite 2 122 0 929 115 0 27 chr15 81549075 81549258 -19831263 + (CATTC)n Satellite Satellite 1 178 0 1169 144 3 3 chr15 81549271 81549616 -19830905 + (CATTC)n Satellite Satellite 2 346 0 716 151 0 27 chr15 81549629 81549814 -19830707 + (CATTC)n Satellite Satellite 1 180 0 1191 117 0 0 chr15 81549832 81550423 -19830098 + (CATTC)n Satellite Satellite 1 591 0 528 183 0 0 chr15 81550444 81550581 -19829940 + (CATTC)n Satellite Satellite 1 137 0 816 161 0 14 chr15 81550592 81550959 -19829562 + (CATTC)n Satellite Satellite 1 361 0 792 169 0 0 chr15 81550986 81551164 -19829357 + (CATTC)n Satellite Satellite 3 180 0 1115 81 0 6 chr15 81551175 81551349 -19829172 + (CATTC)n Satellite Satellite 2 174 0 1134 135 0 8 chr15 81551361 81552270 -19828251 + (CATTC)n Satellite Satellite 1 901 0 882 148 0 0 chr15 81552291 81552467 -19828054 + (CATTC)n Satellite Satellite 1 176 0 900 131 0 0 chr15 81552487 81552662 -19827859 + (CATTC)n Satellite Satellite 2 176 0 672 77 0 0 chr15 81555768 81555859 -19824662 - L1PA2 LINE L1 -1 6154 6064 592 242 7 33 chr15 81557614 81557767 -19822754 - MER5B DNA MER1_type -29 149 1 469 284 103 86 chr15 81559258 81559490 -19821031 + L3 LINE CR1 1339 1574 -3 237 262 65 75 chr15 81559553 81559660 -19820861 - MIR SINE MIR -61 201 96 2226 102 0 3 chr15 81559699 81559992 -19820529 + AluSx SINE Alu 1 292 -20 23 0 0 0 chr15 81559993 81560016 -19820505 + AT_rich Low_complexity Low_complexity 1 23 0 2381 82 0 0 chr15 81560016 81560307 -19820214 + AluSg SINE Alu 1 291 -19 23 0 0 0 chr15 81560414 81560437 -19820084 + AT_rich Low_complexity Low_complexity 1 23 0 338 137 176 59 chr15 81561368 81561470 -19819051 + L1MD2 LINE L1 6028 6141 -218 635 224 6 0 chr15 81561471 81561636 -19818885 + L1MD2 LINE L1 6194 6359 0 715 142 100 0 chr15 81562472 81562592 -19817929 - FAM SINE Alu -23 162 31 276 210 142 137 chr15 81563311 81563530 -19816991 + Charlie8 DNA MER1_type 46 265 -2152 270 0 0 0 chr15 81563831 81563861 -19816660 + (CA)n Simple_repeat Simple_repeat 1 30 0 2248 101 3 19 chr15 81564255 81564571 -19815950 + AluSx SINE Alu 1 311 -1 267 122 0 0 chr15 81564647 81564696 -19815825 - AluJo SINE Alu 0 302 254 1152 193 0 5 chr15 81564704 81564911 -19815610 - AluJo SINE Alu -106 206 1 215 103 26 0 chr15 81565594 81565633 -19814888 + T-rich Low_complexity Low_complexity 1 40 0 430 320 102 25 chr15 81565673 81566104 -19814417 - L1M4 LINE L1 -2689 3457 2994 269 293 28 9 chr15 81566104 81566210 -19814311 - L1MEc LINE L1 -978 5562 5455 909 212 0 22 chr15 81566212 81566415 -19814106 - AluJ SINE Alu 0 312 135 1951 130 0 4 chr15 81566434 81566711 -19813810 - AluSx SINE Alu -36 276 1 698 144 36 0 chr15 81566726 81566837 -19813684 - AluJ SINE Alu -177 135 21 2516 263 145 49 chr15 81566846 81567952 -19812569 - L1MEc LINE L1 -1082 5458 4459 2125 120 3 0 chr15 81567952 81568243 -19812278 + AluY SINE Alu 2 293 -18 2516 263 145 49 chr15 81568243 81569425 -19811096 - L1MEc LINE L1 -2081 4459 2951 329 305 0 0 chr15 81569454 81569559 -19810962 - L1MEc LINE L1 -3654 2886 2782 * 440 312 60 7 chr15 81569552 81569853 -19810668 - L1MEc LINE L1 -4814 1907 1591 952 194 78 0 chr15 81569958 81570149 -19810372 + MER58A DNA MER1_type 1 206 -18 310 317 0 0 chr15 81570160 81570242 -19810279 - L1MEc LINE L1 -5152 1388 1307 265 196 0 0 chr15 81570703 81570749 -19809772 - tRNA-Phe-TTC tRNA tRNA -30 46 1 2127 137 0 0 chr15 81571190 81571489 -19809032 + AluSx SINE Alu 1 299 -13 2427 84 0 10 chr15 81571489 81571799 -19808722 + AluY SINE Alu 1 307 -4 322 302 44 6 chr15 81572293 81572475 -19808046 - HAL1 LINE L1 -894 1613 1425 303 324 9 0 chr15 81572502 81572610 -19807911 - L1M4 LINE L1 -4994 1390 1282 2182 109 0 0 chr15 81572757 81573090 -19807431 - AluSx SINE Alu 0 333 1 218 217 0 43 chr15 81573094 81573163 -19807358 + T-rich Low_complexity Low_complexity 2 67 0 1868 162 0 32 chr15 81573169 81573483 -19807038 - AluJo SINE Alu -8 304 1 2255 111 3 3 chr15 81573503 81573810 -19806711 - AluSq SINE Alu -6 307 1 617 136 36 0 chr15 81573830 81573940 -19806581 - L1MA8 LINE L1 -5 6286 6173 191 111 0 0 chr15 81573951 81573978 -19806543 + (T)n Simple_repeat Simple_repeat 1 27 0 934 132 0 0 chr15 81573986 81574115 -19806406 - AluSg/x SINE Alu -106 204 76 22 0 0 0 chr15 81574291 81574313 -19806208 + AT_rich Low_complexity Low_complexity 1 22 0 1305 158 9 14 chr15 81574321 81574543 -19805978 + AluJo SINE Alu 1 221 -91 579 217 39 20 chr15 81574777 81574980 -19805541 - MER113 DNA MER1_type? -287 234 28 766 191 125 0 chr15 81575017 81575185 -19805336 - MER5A DNA MER1_type 0 189 1 440 322 61 26 chr15 81575658 81575888 -19804633 + MIR SINE MIR 9 246 -16 2130 104 24 0 chr15 81576188 81576475 -19804046 + AluSx SINE Alu 1 294 -18 271 293 85 0 chr15 81576627 81576733 -19803788 + MIR SINE MIR 92 206 -56 23 0 0 0 chr15 81577506 81577529 -19802992 + AT_rich Low_complexity Low_complexity 1 23 0 31 76 0 0 chr15 81578268 81578334 -19802187 + AT_rich Low_complexity Low_complexity 1 66 0 2149 122 0 3 chr15 81578617 81578912 -19801609 - AluSx SINE Alu -16 296 3 2109 104 11 4 chr15 81579375 81579655 -19800866 - AluSx SINE Alu -30 282 1 23 0 0 0 chr15 81579774 81579797 -19800724 + AT_rich Low_complexity Low_complexity 1 23 0 321 270 65 47 chr15 81580004 81580282 -19800239 - L1M4 LINE L1 -2187 3959 3677 432 0 0 0 chr15 81580407 81580455 -19800066 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 245 248 54 40 chr15 81580495 81580644 -19799877 - L1MC5 LINE L1 -201 7760 7610 435 278 109 2 chr15 81580654 81580818 -19799703 - L1MC4 LINE L1 -202 7661 7425 1026 298 126 5 chr15 81580899 81581520 -19799001 - L1MC4 LINE L1 -547 7495 6800 237 108 0 0 chr15 81581523 81581560 -19798961 + (TG)n Simple_repeat Simple_repeat 2 38 0 1243 184 52 66 chr15 81581561 81581866 -19798655 - L1M4 LINE L1 -5758 784 484 1144 184 0 43 chr15 81581973 81582207 -19798314 - AluJo SINE Alu -88 224 1 428 261 8 42 chr15 81582307 81582426 -19798095 - MER58B DNA MER1_type 0 341 227 2419 175 29 28 chr15 81582426 81583119 -19797402 - L1M3 LINE L1 -413 5770 5080 293 254 34 34 chr15 81583129 81583306 -19797215 - L1MC4 LINE L1 -1919 5889 5713 * 332 246 48 12 chr15 81583302 81583469 -19797052 + L1ME4a LINE L1 5943 6115 -6 400 261 63 35 chr15 81583774 81583916 -19796605 - MER58B DNA MER1_type 0 341 196 2014 129 0 0 chr15 81584103 81584381 -19796140 - AluSx SINE Alu -12 300 23 995 136 0 187 chr15 81584536 81584809 -19795712 + AluJo SINE Alu 66 287 -25 358 217 43 0 chr15 81585025 81585117 -19795404 + L1MB7 LINE L1 6064 6159 -25 40739 46 12 1 chr15 81585271 81591143 -19789378 + L1PA4 LINE L1 1 5935 -220 196 337 81 12 chr15 81591793 81591879 -19788642 - L2 LINE L2 -182 3090 2999 2736 199 63 74 chr15 81591983 81592984 -19787537 - Charlie2 DNA MER1_type -16 2846 1857 331 228 22 0 chr15 81593155 81593247 -19787274 + MARNA DNA Mariner 284 377 -209 259 316 112 10 chr15 81593742 81593938 -19786583 + MIR SINE MIR 29 244 -18 692 204 36 0 chr15 81593967 81594134 -19786387 - MER69 DNA AcHobo -2 2524 2352 830 199 0 21 chr15 81594193 81594384 -19786137 + L1MC2 LINE L1 6153 6339 -5 2262 126 13 26 chr15 81594421 81594801 -19785720 - THE1C LTR MaLR 0 375 1 1266 185 55 62 chr15 81594901 81595323 -19785198 - MER69 DNA AcHobo -154 2372 1954 388 276 0 17 chr15 81595970 81596086 -19784435 + GA-rich Low_complexity Low_complexity 1 114 0 24 32 0 0 chr15 81597113 81597144 -19783377 + AT_rich Low_complexity Low_complexity 1 31 0 431 319 110 6 chr15 81597827 81597990 -19782531 + MIR3 SINE MIR 20 199 -9 645 334 83 33 chr15 81598324 81598686 -19781835 - L3 LINE CR1 -113 1464 1085 213 351 79 18 chr15 81599359 81599473 -19781048 + MIR3 SINE MIR 85 205 -3 459 328 70 61 chr15 81599664 81599948 -19780573 + L2 LINE L2 2425 2718 -596 2227 104 0 3 chr15 81599948 81600245 -19780276 - AluSg SINE Alu -14 296 1 459 328 70 61 chr15 81600245 81600488 -19780033 + L2 LINE L2 2718 2957 -357 601 206 73 32 chr15 81600528 81600775 -19779746 - L1MC5 LINE L1 -31 7930 7674 280 281 115 21 chr15 81600801 81600897 -19779624 + MER5B DNA MER1_type 26 130 -48 1057 189 13 4 chr15 81600927 81601154 -19779367 - L1MB4 LINE L1 0 6180 5952 2286 125 0 0 chr15 81601311 81601647 -19778874 + AluSx SINE Alu 1 336 0 658 247 89 0 chr15 81602619 81602809 -19777712 - MIR SINE MIR 0 262 56 327 265 32 82 chr15 81603109 81603328 -19777193 - L2 LINE L2 -421 2893 2686 350 270 124 21 chr15 81603336 81603577 -19776944 - L1MB4 LINE L1 -379 5742 5477 271 312 38 45 chr15 81603785 81604077 -19776444 - L1MB4 LINE L1 -1367 4779 4490 538 228 73 7 chr15 81604100 81604236 -19776285 + MIR SINE MIR 112 256 -6 491 0 17 0 chr15 81604291 81604350 -19776171 + (CA)n Simple_repeat Simple_repeat 1 60 0 984 169 0 38 chr15 81604605 81604788 -19775733 + AluJb SINE Alu 130 305 -7 2022 119 14 14 chr15 81605082 81605375 -19775146 - AluSx SINE Alu -19 293 1 1625 155 40 0 chr15 81605376 81605673 -19774848 - L1PB4 LINE L1 -327 5829 5521 528 249 111 4 chr15 81605895 81606075 -19774446 + MIR SINE MIR 69 262 0 283 190 17 0 chr15 81606121 81606179 -19774342 - MIR SINE MIR -72 190 132 519 258 68 43 chr15 81606183 81606399 -19774122 - HAL1b LINE L1 -804 544 318 2090 261 55 20 chr15 81606399 81607000 -19773521 - MLT1E2 LTR MaLR 0 626 5 519 258 68 43 chr15 81607000 81607062 -19773459 - HAL1b LINE L1 -1030 318 259 404 230 13 79 chr15 81607219 81607284 -19773237 - L1ME1 LINE L1 -4 6162 6094 2290 107 0 3 chr15 81607284 81607584 -19772937 - AluSx SINE Alu -10 302 4 404 230 13 79 chr15 81607584 81607670 -19772851 - L1ME1 LINE L1 -72 6094 6021 25 31 0 0 chr15 81608049 81608081 -19772440 + AT_rich Low_complexity Low_complexity 1 32 0 2317 92 0 16 chr15 81608307 81608611 -19771910 - AluSx SINE Alu -13 299 1 200 197 42 28 chr15 81608969 81609040 -19771481 + (TATG)n Simple_repeat Simple_repeat 2 73 0 263 350 6 6 chr15 81609569 81609732 -19770789 - MER103 DNA DNA -3 163 1 1307 207 70 3 chr15 81609844 81610143 -19770378 - MER58B DNA MER1_type -22 319 1 406 0 56 28 chr15 81612489 81612560 -19767961 + (TTTG)n Simple_repeat Simple_repeat 4 76 0 2102 200 81 4 chr15 81613185 81613689 -19766832 - L1MB8 LINE L1 -5 6173 5631 244 296 80 0 chr15 81613982 81614070 -19766451 - MIR3 SINE MIR -2 206 112 861 141 0 0 chr15 81614339 81614467 -19766054 + FLAM_C SINE Alu 5 132 -1 461 32 32 0 chr15 81615085 81615147 -19765374 + (TATG)n Simple_repeat Simple_repeat 3 66 0 247 271 113 72 chr15 81615382 81615603 -19764918 + MIR SINE MIR 26 255 -7 383 310 107 31 chr15 81615634 81615924 -19764597 - L1M4 LINE L1 -1798 4348 4037 1384 332 132 38 chr15 81615931 81617690 -19762831 - L2 LINE L2 -9 3263 1337 26 30 0 0 chr15 81618639 81618672 -19761849 + AT_rich Low_complexity Low_complexity 1 33 0 1205 149 10 15 chr15 81619371 81619572 -19760949 - AluJo SINE Alu -26 286 87 345 226 24 0 chr15 81619842 81619926 -19760595 - MLT1G1 LTR MaLR -509 86 1 252 281 109 81 chr15 81620830 81620990 -19759531 + MIR SINE MIR 19 180 -76 229 191 0 0 chr15 81622075 81622117 -19758404 + L2 LINE L2 3269 3310 -3 529 252 202 37 chr15 81623780 81624096 -19756425 - L2 LINE L2 -209 3063 2689 2334 89 3 10 chr15 81624283 81624585 -19755936 - AluSq SINE Alu -13 300 1 2217 133 10 0 chr15 81624773 81625082 -19755439 - AluSx SINE Alu 0 312 1 181 289 289 0 chr15 81625416 81625544 -19754977 - MIR3 SINE MIR -41 167 3 1253 197 3 118 chr15 81625642 81625982 -19754539 - AluJo SINE Alu 0 302 2 26 0 0 0 chr15 81626447 81626473 -19754048 + AT_rich Low_complexity Low_complexity 1 26 0 1579 212 103 7 chr15 81626871 81627290 -19753231 - MLT1C LTR MaLR -8 459 1 342 161 0 0 chr15 81627367 81627460 -19753061 + (CAGAGA)n Simple_repeat Simple_repeat 6 98 0 192 286 33 33 chr15 81627496 81627587 -19752934 + L2 LINE L2 2869 2959 -313 309 306 81 23 chr15 81627736 81627909 -19752612 + MIR3 SINE MIR 19 201 -7 276 295 141 12 chr15 81629630 81629871 -19750650 + HAL1 LINE L1 1348 1619 -888 492 291 68 33 chr15 81629880 81630363 -19750158 + L1MEd LINE L1 4 538 -5581 493 252 106 22 chr15 81630379 81630605 -19749916 + L1MEd LINE L1 596 840 -5279 314 106 91 15 chr15 81630698 81630764 -19749757 - MER116 DNA Mariner -5 75 5 431 277 102 29 chr15 81630768 81630974 -19749547 + L1MEd LINE L1 925 1145 -4974 7735 116 28 37 chr15 81630980 81632270 -19748251 + THE1C-int LTR MaLR 291 1568 -12 600 119 10 20 chr15 81632278 81632379 -19748142 + THE1C LTR MaLR 1 100 -275 2316 152 28 0 chr15 81632474 81632863 -19747658 + L1PB4 LINE L1 5750 6149 -7 243 284 172 29 chr15 81633117 81633465 -19747056 + L1MEd LINE L1 1135 1532 -4597 309 244 67 0 chr15 81633514 81633604 -19746917 + MIR SINE MIR 167 262 0 5860 108 19 5 chr15 81634221 81635340 -19745181 + L1PA15 LINE L1 5027 6158 -7 254 340 0 10 chr15 81635480 81635580 -19744941 - LTR67 LTR ERVL 0 557 459 458 290 23 0 chr15 81635941 81636072 -19744449 - ERVL LTR ERVL -2256 3508 3375 382 141 0 14 chr15 81636140 81636211 -19744310 + L1MB7 LINE L1 6115 6184 0 303 285 62 45 chr15 81636217 81636396 -19744125 - HAL1 LINE L1 -388 2119 1938 1733 241 177 17 chr15 81636654 81637297 -19743224 - L1M4 LINE L1 -2191 3955 3416 2158 118 0 0 chr15 81637297 81637593 -19742928 - AluSx SINE Alu -16 296 1 1733 241 177 17 chr15 81637593 81637961 -19742560 - L1M4 LINE L1 -2730 3416 2782 1683 198 39 8 chr15 81637964 81638323 -19742198 - MLT1A2 LTR MaLR -4 370 1 347 300 71 57 chr15 81638333 81638616 -19741905 - L1 LINE L1 -2364 3782 3496 34 0 0 0 chr15 81638725 81638759 -19741762 + AT_rich Low_complexity Low_complexity 1 34 0 233 287 109 10 chr15 81639165 81639367 -19741154 - L1ME4a LINE L1 -168 5953 5732 485 306 16 16 chr15 81639524 81639717 -19740804 + L1ME LINE L1 5405 5597 -524 309 205 0 48 chr15 81640834 81640917 -19739604 + MER96 DNA MER1_type? 4 82 -93 307 263 123 41 chr15 81641244 81641415 -19739106 - MIR3 SINE MIR -21 187 3 557 196 10 0 chr15 81641547 81641649 -19738872 - Tigger7 DNA MER2_type 0 2487 2385 * 1155 154 167 4 chr15 81641647 81641874 -19738647 - Tigger7 DNA MER2_type -2223 264 1 338 257 199 18 chr15 81642180 81642351 -19738170 - MIR SINE MIR -31 231 30 236 244 84 53 chr15 81642382 81642513 -19738008 + MIR SINE MIR 17 151 -57 418 265 170 14 chr15 81643412 81643559 -19736962 + MER5A DNA MER1_type 14 183 -6 777 212 79 0 chr15 81645877 81646066 -19734455 - MER63A DNA MER1_type -1 209 6 315 0 0 0 chr15 81646086 81646121 -19734400 + (CA)n Simple_repeat Simple_repeat 2 36 0 19383 149 46 34 chr15 81646543 81650334 -19730187 - L1MA2 LINE L1 0 7723 3981 1234 135 0 0 chr15 81650334 81650504 -19730017 + AluSg/x SINE Alu 137 306 -6 19383 149 46 34 chr15 81650504 81652506 -19728015 - L1MA2 LINE L1 -3742 3981 2006 237 83 0 0 chr15 81652506 81652542 -19727979 + (TCTCTG)n Simple_repeat Simple_repeat 1 36 0 19383 149 46 34 chr15 81652542 81654191 -19726330 - L1MA2 LINE L1 -5717 2006 19 263 71 24 0 chr15 81654334 81654376 -19726145 + (CA)n Simple_repeat Simple_repeat 2 44 0 307 341 130 57 chr15 81654547 81655533 -19724988 - L2 LINE L2 0 3272 2188 964 286 22 8 chr15 81656751 81656818 -19723703 + HAL1b LINE L1 253 318 -1030 1875 121 70 11 chr15 81656818 81657091 -19723430 + AluSx SINE Alu 1 289 -23 964 286 22 8 chr15 81657091 81657379 -19723142 + HAL1b LINE L1 318 613 -735 1373 273 142 20 chr15 81658984 81659624 -19720897 + HAL1b LINE L1 108 887 -461 2338 111 22 35 chr15 81659624 81659993 -19720528 + THE1B LTR MaLR 1 364 0 1373 273 142 20 chr15 81659993 81660240 -19720281 + HAL1b LINE L1 887 1103 -245 30112 100 12 27 chr15 81660393 81666303 -19714218 + L1P3 LINE L1 3 5923 -546 11805 83 35 0 chr15 81666403 81668782 -19711739 + L1PA7 LINE L1 3735 6144 -10 2014 129 0 16 chr15 81668790 81669093 -19711428 + AluSg SINE Alu 1 298 -12 2836 156 8 55 chr15 81669101 81669716 -19710805 + L1MA10 LINE L1 5745 6330 -4 186 133 0 0 chr15 81669881 81669911 -19710610 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 * 210 143 0 0 chr15 81669905 81669940 -19710581 + (GGGGA)n Simple_repeat Simple_repeat 3 37 0 2391 89 0 13 chr15 81670903 81671216 -19709305 + AluSc SINE Alu 1 309 0 274 95 54 14 chr15 81671501 81671575 -19708946 + (TA)n Simple_repeat Simple_repeat 1 77 0 547 318 126 5 chr15 81671656 81671879 -19708642 - MIR SINE MIR -11 251 2 953 262 13 4 chr15 81673854 81674079 -19706442 + MIR SINE MIR 36 262 0 2556 56 7 3 chr15 81674627 81674930 -19705591 - AluY SINE Alu -7 304 1 583 214 2 41 chr15 81675735 81675914 -19704607 + MER63 DNA MER1_type 1 789 -271 3543 129 46 0 chr15 81675979 81676483 -19704038 - MER1A DNA MER1_type 0 527 1 448 281 86 58 chr15 81676488 81676610 -19703911 - L2 LINE L2 -852 2462 2345 2387 128 3 48 chr15 81676610 81676963 -19703558 + MER1B DNA MER1_type 1 337 0 448 281 86 58 chr15 81676963 81677167 -19703354 - L2 LINE L2 -969 2345 2127 1939 106 3 51 chr15 81677329 81677621 -19702900 + MER1B DNA MER1_type 62 339 0 447 329 144 12 chr15 81677659 81678082 -19702439 - L2 LINE L2 -1006 2308 1830 638 257 40 34 chr15 81680198 81680373 -19700148 + MER5B DNA MER1_type 2 177 -1 656 272 92 32 chr15 81681700 81681917 -19698604 - MIR SINE MIR -9 253 24 189 322 8 74 chr15 81684752 81684787 -19695734 - MIR3 SINE MIR -13 195 159 5626 190 87 47 chr15 81684787 81685912 -19694609 - Charlie1a DNA MER1_type -1307 1454 261 2129 121 17 0 chr15 81685912 81686209 -19694312 - AluSx SINE Alu -10 302 1 5626 190 87 47 chr15 81686209 81686480 -19694041 - Charlie1a DNA MER1_type -2500 261 2 189 322 8 74 chr15 81686480 81686565 -19693956 - MIR3 SINE MIR -49 159 83 866 323 93 24 chr15 81687645 81688054 -19692467 - L2 LINE L2 0 3272 2836 21 36 0 0 chr15 81688195 81688223 -19692298 + AT_rich Low_complexity Low_complexity 1 28 0 2479 32 0 3 chr15 81689133 81689460 -19691061 - AluY SINE Alu 0 326 1 1033 208 33 0 chr15 81689491 81689674 -19690847 - MER5A DNA MER1_type 0 189 1 333 256 72 32 chr15 81690402 81690527 -19689994 - MIR3 SINE MIR -41 167 38 196 343 52 45 chr15 81690662 81690796 -19689725 + L2 LINE L2 3123 3257 -15 212 244 0 0 chr15 81691142 81691187 -19689334 + (TCCA)n Simple_repeat Simple_repeat 1 45 0 284 317 129 0 chr15 81693482 81693583 -19686938 + MIR SINE MIR 37 150 -58 2204 115 0 40 chr15 81694864 81695187 -19685334 - AluSx SINE Alu -2 310 1 638 275 157 22 chr15 81695219 81695543 -19684978 - LTR16A LTR ERVL -82 368 1 632 250 56 35 chr15 81695550 81695834 -19684687 + L1ME LINE L1 3877 4166 -1980 444 272 90 39 chr15 81695989 81696268 -19684253 + L1ME LINE L1 4572 4864 -1282 566 236 101 86 chr15 81696335 81696484 -19684037 + L1ME LINE L1 4974 5119 -1002 549 136 59 17 chr15 81696484 81696602 -19683919 + L1MB7 LINE L1 6062 6184 0 566 236 101 86 chr15 81696602 81696778 -19683743 + L1ME LINE L1 5119 5291 -830 2600 65 0 0 chr15 81696778 81697084 -19683437 + AluY SINE Alu 3 308 -3 566 236 101 86 chr15 81697084 81697390 -19683131 + L1ME LINE L1 5291 5637 -484 2181 115 0 3 chr15 81697582 81697893 -19682628 + AluSq SINE Alu 1 310 0 287 362 71 0 chr15 81698034 81698161 -19682360 + MIR3 SINE MIR 60 195 -13 2142 108 11 0 chr15 81698459 81698745 -19681776 + AluSx SINE Alu 14 302 -10 344 310 117 12 chr15 81699095 81699266 -19681255 - MIR3 SINE MIR -5 203 15 534 287 59 12 chr15 81699286 81699692 -19680829 - L1ME4a LINE L1 0 6121 5601 180 315 110 0 chr15 81700761 81700834 -19679687 - L2 LINE L2 -1 3271 3191 425 350 52 37 chr15 81700979 81701292 -19679229 - L2 LINE L2 -264 3008 2694 264 350 25 17 chr15 81701705 81701825 -19678696 - MIR SINE MIR -111 151 31 1635 151 31 71 chr15 81703203 81703527 -19676994 - AluJo SINE Alu -1 311 1 582 214 0 9 chr15 81704542 81704654 -19675867 - MER5B DNA MER1_type -67 111 1 205 307 80 44 chr15 81705041 81705178 -19675343 - L2 LINE L2 -237 3035 2894 21 0 0 0 chr15 81706655 81706676 -19673845 + AT_rich Low_complexity Low_complexity 1 21 0 339 209 183 39 chr15 81707131 81707284 -19673237 - L2 LINE L2 -920 2394 2220 588 246 0 93 chr15 81707506 81707685 -19672836 - MLT1K LTR MaLR -4 584 427 957 198 56 0 chr15 81707685 81707847 -19672674 + FAM SINE Alu 1 171 -4 588 246 0 93 chr15 81707847 81707882 -19672639 - MLT1K LTR MaLR -161 427 390 694 213 65 100 chr15 81707907 81708137 -19672384 - L2 LINE L2 -491 2823 2602 3761 242 77 37 chr15 81708150 81708386 -19672135 + L2 LINE L2 1707 1932 -1382 1993 98 67 14 chr15 81708386 81708671 -19671850 - AluSx SINE Alu -12 300 1 3761 242 77 37 chr15 81708671 81709607 -19670914 + L2 LINE L2 1932 2926 -388 1831 174 32 8 chr15 81709610 81709990 -19670531 - Charlie4a DNA MER1_type -40 468 80 325 267 0 0 chr15 81710054 81710129 -19670392 + L2 LINE L2 2922 2996 -317 181 250 77 0 chr15 81710766 81710818 -19669703 - L2 LINE L2 0 3272 3217 252 180 49 0 chr15 81710884 81710945 -19669576 + (TGAA)n Simple_repeat Simple_repeat 2 65 0 226 333 15 0 chr15 81711323 81711389 -19669132 + L2 LINE L2 3230 3296 -17 300 212 0 80 chr15 81711389 81711502 -19669019 + L1ME2 LINE L1 2928 3031 -3115 716 117 0 18 chr15 81711653 81711764 -19668757 - MLT1A1 LTR MaLR 0 365 257 570 299 46 12 chr15 81711850 81712174 -19668347 + L1ME2 LINE L1 4109 4443 -1703 251 295 95 11 chr15 81712188 81712283 -19668238 + MIR SINE MIR 14 116 -146 1963 221 69 89 chr15 81712400 81713037 -19667484 - MLT1E2 LTR MaLR 0 626 1 1527 155 30 4 chr15 81713809 81714073 -19666448 + AluJb SINE Alu 40 310 -2 2351 93 0 0 chr15 81715231 81715521 -19665000 - AluSc SINE Alu -19 290 1 2480 81 0 0 chr15 81717384 81717694 -19662827 - AluY SINE Alu -1 310 1 241 287 136 104 chr15 81718028 81718279 -19662242 - L2 LINE L2 0 3272 3014 251 196 0 0 chr15 81718483 81718534 -19661987 + (CA)n Simple_repeat Simple_repeat 2 52 0 549 328 173 19 chr15 81718591 81719116 -19661405 - L2 LINE L2 -1 3312 2709 2720 209 99 28 chr15 81719132 81719343 -19661178 + L1ME2 LINE L1 5104 5299 -865 429 20 0 0 chr15 81719343 81719393 -19661128 + (CA)n Simple_repeat Simple_repeat 1 50 0 2720 209 99 28 chr15 81719393 81719889 -19660632 + L1ME2 LINE L1 5299 5929 -235 2224 109 0 3 chr15 81719889 81720193 -19660328 + AluSg SINE Alu 1 303 -7 2720 209 99 28 chr15 81720193 81720448 -19660073 + L1ME2 LINE L1 5929 6164 0 416 295 150 21 chr15 81720521 81720714 -19659807 + MIR SINE MIR 34 251 -11 25 0 0 0 chr15 81720720 81720745 -19659776 + AT_rich Low_complexity Low_complexity 1 25 0 498 283 253 0 chr15 81721954 81722152 -19658369 - MIR SINE MIR -3 259 12 184 318 30 15 chr15 81722237 81722303 -19658218 - MER5A DNA MER1_type -15 174 108 222 263 138 0 chr15 81722355 81722435 -19658086 + L2 LINE L2 2338 2428 -886 291 330 0 20 chr15 81722457 81722557 -19657964 + L2 LINE L2 2545 2642 -672 285 317 29 29 chr15 81722652 81722756 -19657765 + MIR SINE MIR 148 251 -11 24 0 0 0 chr15 81722762 81722786 -19657735 + AT_rich Low_complexity Low_complexity 1 24 0 385 274 32 0 chr15 81722898 81722993 -19657528 + L2 LINE L2 3175 3272 0 622 355 61 39 chr15 81723017 81723476 -19657045 + L2 LINE L2 2804 3272 0 213 196 0 22 chr15 81724028 81724074 -19656447 - MIR3 SINE MIR -21 187 143 1696 222 50 24 chr15 81724079 81724252 -19656269 - Charlie4a DNA MER1_type -1453 508 341 2257 81 0 3 chr15 81724252 81724549 -19655972 + AluY SINE Alu 2 297 -14 1696 222 50 24 chr15 81724549 81724870 -19655651 - Charlie4a DNA MER1_type -1620 341 1 357 347 20 20 chr15 81724946 81725096 -19655425 + MIR SINE MIR 2 151 -111 251 282 223 19 chr15 81725184 81725287 -19655234 - L3 LINE CR1 -212 1365 1242 402 368 77 27 chr15 81726088 81726490 -19654031 + L1 LINE L1 4407 4828 -1318 2998 184 96 60 chr15 81726563 81727720 -19652801 + L1MB8 LINE L1 4457 5667 -511 2249 80 49 0 chr15 81727720 81728008 -19652513 + AluY SINE Alu 1 302 -9 2998 184 96 60 chr15 81728008 81728528 -19651993 + L1MB8 LINE L1 5667 6167 -11 21 36 0 0 chr15 81728745 81728773 -19651748 + AT_rich Low_complexity Low_complexity 1 28 0 2311 109 21 44 chr15 81728992 81729376 -19651145 + THE1C LTR MaLR 1 375 0 10550 106 11 46 chr15 81729376 81731014 -19649507 + THE1C-int LTR MaLR 1 1580 0 2298 124 11 21 chr15 81731014 81731393 -19649128 + THE1C LTR MaLR 1 375 0 234 341 0 38 chr15 81732171 81732303 -19648218 - MLT1J LTR MaLR -58 453 327 201 292 171 34 chr15 81732340 81732535 -19647986 + MIR3 SINE MIR 15 246 -16 205 255 0 20 chr15 81732725 81732776 -19647745 + L2 LINE L2 1362 1411 -1903 547 245 129 38 chr15 81732869 81733328 -19647193 - L1MC4a LINE L1 -621 5541 5406 668 306 13 84 chr15 81733390 81733656 -19646865 + L2 LINE L2 2569 2801 -513 2237 125 6 6 chr15 81733656 81733967 -19646554 + AluSx SINE Alu 1 311 -1 668 306 13 84 chr15 81733967 81734083 -19646438 + L2 LINE L2 2801 2924 -390 323 241 131 73 chr15 81734088 81734279 -19646242 + HAL1 LINE L1 1142 1343 -1164 362 277 63 66 chr15 81734836 81735028 -19645493 + MER5A DNA MER1_type 3 178 0 452 272 35 6 chr15 81739142 81739315 -19641206 + (TTAGGG)n Simple_repeat Simple_repeat 3 180 0 1252 115 25 10 chr15 81740432 81740632 -19639889 - L1MC1 LINE L1 0 6333 6131 2762 220 35 50 chr15 81740638 81740803 -19639718 - L1 LINE L1 -2334 3812 3646 2153 119 3 0 chr15 81740803 81741105 -19639416 - AluSx SINE Alu -9 303 1 2762 220 35 50 chr15 81741105 81741683 -19638838 - L1 LINE L1 -2500 3646 3061 1630 178 34 17 chr15 81741683 81742010 -19638511 - AluSx SINE Alu 0 312 7 2155 136 0 0 chr15 81742020 81742321 -19638200 - AluSx SINE Alu -11 301 1 2762 220 35 50 chr15 81742321 81742679 -19637842 - L1 LINE L1 -3094 3052 2748 8629 83 5 0 chr15 81742686 81743907 -19636614 + L1P LINE L1 1 1227 -4919 12178 34 6 1 chr15 81743907 81746140 -19634381 + L1PA4 LINE L1 3915 6154 -1 3387 126 44 22 chr15 81746210 81747069 -19633452 - L1MCa LINE L1 -4468 1958 990 2202 227 90 61 chr15 81747132 81747197 -19633324 - L1ME1 LINE L1 -16 6150 6088 3267 78 18 0 chr15 81747197 81747643 -19632878 - L1PA10 LINE L1 -10 6158 5705 2202 227 90 61 chr15 81747643 81748705 -19631816 - L1ME1 LINE L1 -78 6088 5364 1945 176 89 12 chr15 81748710 81749137 -19631384 + MLT1C LTR MaLR 8 467 0 269 167 0 64 chr15 81749137 81749215 -19631306 - L1ME1 LINE L1 -973 5371 5299 2228 126 7 0 chr15 81749313 81749623 -19630898 + AluSx SINE Alu 1 312 0 1317 117 29 0 chr15 81750152 81750357 -19630164 - L1MC1 LINE L1 -5 6328 6118 318 304 96 30 chr15 81750728 81750863 -19629658 + L2 LINE L2 2925 3068 -204 24 0 0 0 chr15 81751463 81751487 -19629034 + AT_rich Low_complexity Low_complexity 1 24 0 260 261 31 0 chr15 81752104 81752169 -19628352 - MIR SINE MIR -64 144 78 1494 175 82 8 chr15 81752197 81752465 -19628056 + AluJo SINE Alu 1 288 -24 24 35 0 53 chr15 81752959 81752990 -19627531 + AT_rich Low_complexity Low_complexity 1 29 -25 2416 80 0 0 chr15 81752990 81753291 -19627230 + AluY SINE Alu 1 301 -10 24 35 0 53 chr15 81753291 81753316 -19627205 + AT_rich Low_complexity Low_complexity 29 54 0 521 293 113 17 chr15 81756770 81757009 -19623512 + L2 LINE L2 2130 2391 -923 2530 231 75 1 chr15 81757252 81758087 -19622434 - L1M4 LINE L1 -2820 3326 2430 524 135 0 0 chr15 81758115 81758204 -19622317 - L1MCc LINE L1 -5514 909 821 1032 296 31 15 chr15 81758448 81758904 -19621617 - L1MCc LINE L1 -5929 494 32 426 252 33 0 chr15 81758963 81759114 -19621407 - L1MEd LINE L1 -2653 3476 3321 983 251 128 68 chr15 81759127 81760095 -19620426 - L1MEd LINE L1 -4097 2213 1153 2617 207 108 17 chr15 81761174 81762443 -19618078 - L1MA10 LINE L1 -39 6295 4912 3023 153 48 0 chr15 81762443 81763046 -19617475 - L1PA16 LINE L1 -5 6161 5383 * 11873 196 42 29 chr15 81763030 81764798 -19615723 - L1PA15-16 LINE L1 -793 6056 4313 207 0 0 0 chr15 81764798 81764821 -19615700 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 11873 196 42 29 chr15 81764821 81765374 -19615147 - L1PA15-16 LINE L1 -2536 4313 3769 2174 106 3 3 chr15 81765374 81765666 -19614855 - AluSg SINE Alu -18 292 1 11873 196 42 29 chr15 81765666 81766473 -19614048 - L1PA15-16 LINE L1 -3080 3769 2863 2171 97 36 0 chr15 81766473 81766751 -19613770 + AluSx SINE Alu 1 288 -24 11873 196 42 29 chr15 81766751 81766873 -19613648 - L1PA15-16 LINE L1 -3986 2863 2744 1030 171 24 15 chr15 81766880 81767085 -19613436 - L1MA10 LINE L1 -1226 4920 4714 1522 303 98 66 chr15 81767279 81768756 -19611765 + L2 LINE L2 1758 3271 -1 293 312 25 45 chr15 81769703 81769860 -19610661 + L2 LINE L2 3119 3272 -41 384 340 78 13 chr15 81769868 81770021 -19610500 + MER5A DNA MER1_type 24 186 -3 636 111 0 10 chr15 81770291 81770390 -19610131 + MER4A LTR ERV1 1 98 -566 1655 123 14 27 chr15 81770390 81770740 -19609781 + MER4A LTR ERV1 261 664 0 22 35 0 0 chr15 81770805 81770834 -19609687 + AT_rich Low_complexity Low_complexity 1 29 0 641 351 88 41 chr15 81770920 81771540 -19608981 - L2 LINE L2 -2 3270 2606 1570 89 22 13 chr15 81771540 81771765 -19608756 - MER30 DNA MER1_type 0 230 4 641 351 88 41 chr15 81771765 81771784 -19608737 - L2 LINE L2 -666 2606 2589 265 297 81 9 chr15 81772846 81772957 -19607564 + LTR67 LTR ERVL 439 557 0 581 94 12 0 chr15 81773092 81773177 -19607344 + L1PA6 LINE L1 11 96 -6050 32048 64 5 11 chr15 81773177 81777187 -19603334 + L1PA6 LINE L1 847 4810 -1344 2201 52 48 0 chr15 81777187 81777481 -19603040 + AluY SINE Alu 1 307 0 32048 64 5 11 chr15 81777481 81778818 -19601703 + L1PA6 LINE L1 4810 6154 0 2243 110 30 0 chr15 81778893 81779193 -19601328 + AluSc SINE Alu 1 309 0 248 103 29 88 chr15 81779335 81779403 -19601118 + A-rich Low_complexity Low_complexity 3 66 0 240 100 0 100 chr15 81781953 81782013 -19598508 - AluSp/q SINE Alu -9 294 241 360 279 188 7 chr15 81782484 81782638 -19597883 + MIR SINE MIR 17 198 -64 412 283 42 8 chr15 81783181 81783301 -19597220 - L2 LINE L2 -4 3309 3186 1744 159 21 17 chr15 81785067 81785357 -19595164 - AluJb SINE Alu -11 301 11 413 253 93 44 chr15 81785691 81785845 -19594676 + L1ME3A LINE L1 3063 3229 -2917 978 146 52 38 chr15 81785845 81786057 -19594464 + L1MC2 LINE L1 6120 6334 -10 413 253 93 44 chr15 81786057 81786084 -19594437 + L1ME3A LINE L1 3229 3253 -2893 1641 283 68 43 chr15 81786246 81787208 -19593313 + L1ME3A LINE L1 3207 4192 -1954 808 194 14 0 chr15 81787357 81787536 -19592985 + FRAM SINE Alu 1 181 0 698 270 116 29 chr15 81787681 81788635 -19591886 + L1ME3A LINE L1 4885 5937 -233 320 329 107 32 chr15 81788930 81789277 -19591244 - L2 LINE L2 -1201 2113 1741 2347 123 0 0 chr15 81789902 81790212 -19590309 + AluSx SINE Alu 1 310 -2 772 183 0 0 chr15 81790245 81790376 -19590145 + FLAM_C SINE Alu 3 133 0 523 256 116 28 chr15 81790966 81791430 -19589091 + L1ME4a LINE L1 5616 6120 -1 2353 75 0 29 chr15 81792024 81792331 -19588190 - AluY SINE Alu -13 298 1 2134 116 30 0 chr15 81792336 81792639 -19587882 - AluSx SINE Alu 0 312 1 25 0 0 0 chr15 81794146 81794171 -19586350 + AT_rich Low_complexity Low_complexity 1 25 0 294 194 20 10 chr15 81794177 81794275 -19586246 + (TA)n Simple_repeat Simple_repeat 2 100 0 601 235 50 0 chr15 81794281 81794400 -19586121 - FLAM_C SINE Alu -18 125 1 24 32 0 0 chr15 81794495 81794526 -19585995 + AT_rich Low_complexity Low_complexity 1 31 0 297 298 99 7 chr15 81794799 81794950 -19585571 - Charlie8 DNA MER1_type -2250 167 3 351 275 88 50 chr15 81795492 81795652 -19584869 - MIR SINE MIR -48 214 49 404 354 233 22 chr15 81795852 81797155 -19583366 + L2 LINE L2 177 1754 -1560 331 232 16 80 chr15 81797656 81797714 -19582807 + L2 LINE L2 472 519 -2795 1783 165 38 10 chr15 81797714 81798005 -19582516 - AluJo SINE Alu -13 299 1 331 232 16 80 chr15 81798005 81798071 -19582450 + L2 LINE L2 519 588 -2726 1736 146 37 24 chr15 81798218 81798513 -19582008 + AluJo SINE Alu 3 301 -11 345 240 73 0 chr15 81799607 81799703 -19580818 + MER103 DNA DNA 14 116 -50 182 282 71 82 chr15 81800180 81800350 -19580171 + MIR3 SINE MIR 31 198 -10 225 263 84 11 chr15 81800676 81800771 -19579750 - MER117 DNA MER1_type -78 119 18 225 353 71 0 chr15 81800785 81800870 -19579651 + MIR SINE MIR 8 98 -164 596 270 23 11 chr15 81800885 81801059 -19579462 + MIR SINE MIR 77 252 -10 743 164 60 0 chr15 81801173 81801307 -19579214 + MER46A DNA MER2_type 1 142 -94 303 222 0 0 chr15 81801546 81801609 -19578912 + MER81 DNA DNA 21 83 -31 227 265 12 12 chr15 81801650 81801733 -19578788 + MIR SINE MIR 173 255 -7 475 261 73 36 chr15 81801906 81802071 -19578450 + MIR SINE MIR 90 260 -2 1906 173 3 0 chr15 81802621 81802922 -19577599 - AluSx SINE Alu -10 302 1 473 288 73 108 chr15 81803610 81803982 -19576539 - L2 LINE L2 0 3272 2914 4327 204 38 46 chr15 81805135 81806238 -19574283 - L1MD1 LINE L1 0 6242 5132 2260 111 0 9 chr15 81806238 81806553 -19573968 - AluSx SINE Alu 0 312 1 4327 204 38 46 chr15 81806553 81807904 -19572617 - L1MD1 LINE L1 -1110 5132 3813 362 355 89 23 chr15 81808110 81808324 -19572197 - MIR SINE MIR -14 248 21 304 261 43 33 chr15 81809025 81809117 -19571404 + MIR3 SINE MIR 100 192 -16 22 0 0 0 chr15 81810635 81810657 -19569864 + AT_rich Low_complexity Low_complexity 1 22 0 232 218 90 0 chr15 81811265 81811343 -19569178 - L1ME LINE L1 -199 5922 5838 463 251 216 0 chr15 81811378 81811549 -19568972 + MIR SINE MIR 3 210 -52 2697 245 44 75 chr15 81814287 81815118 -19565403 + L2 LINE L2 1803 2600 -714 2196 112 0 3 chr15 81815118 81815412 -19565109 + AluSc SINE Alu 1 293 -16 2697 245 44 75 chr15 81815412 81815560 -19564961 + L2 LINE L2 2600 2751 -563 295 325 64 39 chr15 81816890 81817093 -19563428 + L2 LINE L2 2550 2757 -557 278 174 153 10 chr15 81817263 81817361 -19563160 - MER113 DNA MER1_type? -395 126 15 216 283 17 0 chr15 81817646 81817706 -19562815 + (TGAA)n Simple_repeat Simple_repeat 2 62 0 213 224 0 0 chr15 81817723 81817781 -19562740 + (TGAA)n Simple_repeat Simple_repeat 1 58 0 269 250 0 56 chr15 81818887 81818959 -19561562 + L2 LINE L2 3223 3290 -23 751 269 37 14 chr15 81819184 81819400 -19561121 + MIR SINE MIR 6 226 -36 431 245 104 67 chr15 81819551 81819820 -19560701 + L3 LINE CR1 1155 1433 -144 2393 218 43 27 chr15 81823322 81823906 -19556615 - MLT1E LTR MaLR 0 593 1 1096 288 81 39 chr15 81823967 81825550 -19554971 - L1ME3 LINE L1 -216 5946 4283 356 259 185 65 chr15 81828421 81828773 -19551748 - MLT1J LTR MaLR -6 505 112 381 279 100 50 chr15 81829078 81829218 -19551303 + MIR3 SINE MIR 31 177 -31 1360 277 51 10 chr15 81830136 81830274 -19550247 - MLT1G1 LTR MaLR 0 595 464 2126 118 14 0 chr15 81830274 81830570 -19549951 - AluSq SINE Alu -13 300 1 1360 277 51 10 chr15 81830570 81830955 -19549566 - MLT1G1 LTR MaLR -131 464 1 342 0 0 0 chr15 81831788 81831826 -19548695 + (TG)n Simple_repeat Simple_repeat 1 38 0 285 333 90 38 chr15 81832104 81832573 -19547948 - L1ME3 LINE L1 -1929 4217 3725 778 217 13 0 chr15 81832650 81832807 -19547714 - MER3 DNA MER1_type 0 209 51 21 57 0 0 chr15 81832974 81833009 -19547512 + AT_rich Low_complexity Low_complexity 1 35 0 2331 91 3 7 chr15 81833107 81833415 -19547106 + AluSq SINE Alu 1 307 -6 338 155 42 28 chr15 81833523 81833594 -19546927 - L1MB2 LINE L1 -7 6164 6093 578 298 107 52 chr15 81833679 81833806 -19546715 - L1M4 LINE L1 -1987 4159 4041 300 53 0 0 chr15 81833806 81833844 -19546677 + (TG)n Simple_repeat Simple_repeat 2 39 0 578 298 107 52 chr15 81833844 81834219 -19546302 - L1M4 LINE L1 -2105 4041 3629 348 262 201 7 chr15 81834471 81834620 -19545901 - MIR SINE MIR -1 261 84 25 0 0 0 chr15 81834848 81834873 -19545648 + AT_rich Low_complexity Low_complexity 1 25 0 270 0 0 0 chr15 81835522 81835552 -19544969 + (TG)n Simple_repeat Simple_repeat 2 31 0 956 287 119 14 chr15 81836950 81837371 -19543150 + L1ME3A LINE L1 5406 5870 -300 2234 92 7 0 chr15 81837425 81837720 -19542801 + AluSg SINE Alu 1 297 -13 924 226 166 33 chr15 81838253 81838621 -19541900 + L1M4 LINE L1 4787 5203 -943 538 157 168 0 chr15 81838625 81838753 -19541768 + L1MC3 LINE L1 6093 6219 -1566 388 253 113 41 chr15 81838778 81838972 -19541549 - L1MB2 LINE L1 -2037 5771 5564 967 193 104 0 chr15 81839273 81839485 -19541036 - LTR9B LTR ERV1 0 644 411 1357 197 67 3 chr15 81839696 81839980 -19540541 - AluJb SINE Alu -6 306 5 180 0 0 0 chr15 81840311 81840331 -19540190 + (TTG)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr15 81840360 81840380 -19540141 + (TTG)n Simple_repeat Simple_repeat 1 20 0 189 171 0 0 chr15 81840409 81840444 -19540077 + (CTG)n Simple_repeat Simple_repeat 1 35 0 332 313 45 15 chr15 81840528 81840662 -19539859 + MIR SINE MIR 63 200 -62 7387 28 12 1 chr15 81840821 81841879 -19538642 + L1PA3 LINE L1 5086 6152 -3 690 83 0 0 chr15 81843225 81843321 -19537200 + AluS SINE Alu 1 96 -216 21 0 0 0 chr15 81843551 81843572 -19536949 + AT_rich Low_complexity Low_complexity 1 21 0 220 344 130 0 chr15 81843855 81843986 -19536535 - L2 LINE L2 -1017 2297 2150 186 289 145 0 chr15 81844093 81844169 -19536352 + L2 LINE L2 3163 3249 -23 245 298 31 68 chr15 81844271 81844462 -19536059 - L1MC4a LINE L1 -1886 5922 5739 278 310 170 18 chr15 81844462 81844633 -19535888 - L2 LINE L2 -1300 2014 1818 209 32 0 32 chr15 81844790 81844821 -19535700 + (TATG)n Simple_repeat Simple_repeat 3 32 0 357 75 0 0 chr15 81845044 81845097 -19535424 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 204 40 0 0 chr15 81845098 81845123 -19535398 + (GA)n Simple_repeat Simple_repeat 1 25 0 803 122 0 0 chr15 81845123 81845230 -19535291 - FLAM_C SINE Alu -36 107 1 23 0 0 0 chr15 81845540 81845563 -19534958 + AT_rich Low_complexity Low_complexity 1 23 0 452 125 29 22 chr15 81845638 81845774 -19534747 + (TA)n Simple_repeat Simple_repeat 2 138 0 252 0 0 0 chr15 81845774 81845802 -19534719 + (CA)n Simple_repeat Simple_repeat 2 29 0 1091 170 0 6 chr15 81845803 81845985 -19534536 - AluJb SINE Alu 0 312 132 369 222 0 0 chr15 81845985 81846048 -19534473 - AluS SINE Alu -239 64 2 253 222 78 11 chr15 81846140 81846230 -19534291 - L1P LINE L1 -1656 4490 4395 2298 92 7 3 chr15 81846475 81846778 -19533743 + AluY SINE Alu 1 304 -7 365 209 70 83 chr15 81846778 81847008 -19533513 + L1ME4a LINE L1 5891 6117 -4 1323 256 131 19 chr15 81847826 81848354 -19532167 + MLT1E LTR MaLR 3 589 -4 2054 108 7 13 chr15 81848729 81849036 -19531485 + AluSc SINE Alu 1 305 -4 1495 103 5 5 chr15 81849178 81849382 -19531139 - AluSp SINE Alu -12 301 98 290 132 0 0 chr15 81849482 81849520 -19531001 - Alu SINE Alu -254 48 11 238 294 86 47 chr15 81849589 81849844 -19530677 - HAL1 LINE L1 -1429 1078 814 189 321 30 75 chr15 81850548 81850682 -19529839 + MER5B DNA MER1_type 21 148 -30 22 80 0 0 chr15 81851254 81851304 -19529217 + AT_rich Low_complexity Low_complexity 1 50 0 2073 122 3 0 chr15 81851664 81851951 -19528570 + AluSx SINE Alu 1 288 -24 930 232 129 59 chr15 81852363 81852704 -19527817 - MLT1A1 LTR MaLR 0 365 1 1452 140 121 0 chr15 81853008 81853157 -19527364 - AluJo SINE Alu -15 297 167 274 23 47 0 chr15 81853157 81853200 -19527321 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 1452 140 121 0 chr15 81853200 81853315 -19527206 - AluJo SINE Alu -145 167 1 711 154 34 0 chr15 81854331 81854448 -19526073 - FRAM SINE Alu -25 151 31 303 305 61 0 chr15 81854820 81854951 -19525570 - L1ME LINE L1 -425 5696 5558 1920 164 0 7 chr15 81854981 81855286 -19525235 + AluSx SINE Alu 1 303 -9 1582 206 0 3 chr15 81855842 81856129 -19524392 - AluJo SINE Alu -26 286 1 248 252 32 89 chr15 81856475 81856598 -19523923 + MIR SINE MIR 107 222 -40 243 316 61 82 chr15 81856947 81857143 -19523378 - MIR SINE MIR -3 259 68 1817 162 0 7 chr15 81857663 81857971 -19522550 - AluSx SINE Alu 0 306 1 820 173 0 62 chr15 81858590 81858752 -19521769 + AluJb SINE Alu 146 297 -15 21 36 0 0 chr15 81859167 81859195 -19521326 + AT_rich Low_complexity Low_complexity 1 28 0 868 253 136 6 chr15 81859335 81859706 -19520815 + L1MC4 LINE L1 5521 5797 -373 599 235 0 0 chr15 81859719 81859838 -19520683 + MER106A DNA MER1_type 1 119 -117 254 286 46 51 chr15 81859941 81860116 -19520405 + L1ME3A LINE L1 5987 6160 -10 2096 132 0 13 chr15 81860653 81860963 -19519558 + AluSq SINE Alu 1 306 -7 599 288 64 58 chr15 81861569 81861913 -19518608 + L3 LINE CR1 1055 1400 -177 200 299 145 26 chr15 81861922 81862039 -19518482 + L3b LINE CR1 1452 1582 -1 264 323 180 16 chr15 81862199 81862388 -19518133 - L1MDa LINE L1 -4512 1617 1398 319 283 132 33 chr15 81862422 81862574 -19517947 - L1MDa LINE L1 -4908 1211 1045 254 294 27 7 chr15 81862584 81862730 -19517791 - L1MDa LINE L1 -5133 999 851 248 282 90 0 chr15 81862919 81862997 -19517524 - L1MDa LINE L1 -5466 653 569 21 36 0 0 chr15 81863706 81863734 -19516787 + AT_rich Low_complexity Low_complexity 1 28 0 767 171 0 0 chr15 81863734 81863857 -19516664 - FLAM_C SINE Alu -18 125 3 622 189 196 0 chr15 81863879 81864022 -19516499 - MER5A DNA MER1_type -18 171 1 323 214 22 0 chr15 81864064 81864153 -19516368 + (CATA)n Simple_repeat Simple_repeat 3 93 0 1591 194 3 3 chr15 81864972 81865261 -19515260 - AluJb SINE Alu -23 289 1 21 0 0 0 chr15 81865273 81865294 -19515227 + AT_rich Low_complexity Low_complexity 1 21 0 1991 145 3 7 chr15 81866679 81866982 -19513539 + AluSx SINE Alu 1 302 -10 1438 171 17 21 chr15 81867818 81868105 -19512416 - L1MB7 LINE L1 -18 6166 5881 191 36 36 0 chr15 81870336 81870364 -19510157 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2263 58 0 7 chr15 81870399 81870677 -19509844 + AluY SINE Alu 28 303 -8 628 180 187 13 chr15 81871522 81871673 -19508848 - MIR SINE MIR -64 198 30 221 0 35 0 chr15 81871807 81871836 -19508685 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 502 283 61 97 chr15 81872255 81872654 -19507867 + L1MEd LINE L1 561 932 -5187 1477 153 27 96 chr15 81872654 81872988 -19507533 + AluJb SINE Alu 1 311 -1 502 283 61 97 chr15 81872988 81873195 -19507326 + L1MEd LINE L1 932 1145 -4974 358 312 115 37 chr15 81873254 81874019 -19506502 + L1MEd LINE L1 2112 2936 -3193 183 162 0 0 chr15 81874026 81874063 -19506458 + CT-rich Low_complexity Low_complexity 6 42 0 223 286 124 19 chr15 81874213 81874318 -19506203 - L2 LINE L2 -18 3295 3180 224 255 0 0 chr15 81874318 81874369 -19506152 - L2 LINE L2 -1027 2287 2237 279 247 47 0 chr15 81874575 81874660 -19505861 + MIR SINE MIR 60 148 -114 376 299 90 37 chr15 81874853 81874987 -19505534 + L2 LINE L2 3117 3257 -15 2204 131 0 0 chr15 81875068 81875366 -19505155 - AluSx SINE Alu -14 298 1 181 312 28 46 chr15 81875366 81875468 -19505053 - L2 LINE L2 -245 3027 2926 520 186 7 71 chr15 81875968 81876108 -19504413 + FLAM_C SINE Alu 1 131 -2 884 264 55 20 chr15 81876608 81876953 -19503568 + L1MC4a LINE L1 5691 6047 -1761 235 267 35 12 chr15 81877596 81877682 -19502839 - L1MB7 LINE L1 -236 5885 5798 340 276 115 29 chr15 81877707 81878169 -19502352 - L1MB7 LINE L1 -461 5701 5189 566 189 4 34 chr15 81878195 81878429 -19502092 + CT-rich Low_complexity Low_complexity 1 227 0 1530 204 4 4 chr15 81878543 81878817 -19501704 - AluJo SINE Alu -38 274 1 863 195 7 0 chr15 81879561 81879715 -19500806 - MER5A DNA MER1_type -33 156 2 2238 112 0 0 chr15 81880051 81880363 -19500158 - AluSx SINE Alu 0 312 1 247 286 89 9 chr15 81883083 81883195 -19497326 + MIR SINE MIR 72 192 -70 245 333 127 0 chr15 81884160 81884310 -19496211 + MIR3 SINE MIR 31 199 -9 329 319 42 8 chr15 81884316 81884435 -19496086 + L2 LINE L2 3188 3310 -3 239 222 37 0 chr15 81884767 81884821 -19495700 + MIR SINE MIR 94 149 -59 290 343 0 6 chr15 81885696 81885874 -19494647 + GA-rich Low_complexity Low_complexity 2 178 0 189 217 4 0 chr15 81886148 81886193 -19494328 + MIR SINE MIR 100 146 -62 2002 139 6 28 chr15 81886729 81887046 -19493475 + AluSx SINE Alu 2 311 -1 276 309 169 0 chr15 81887098 81887234 -19493287 + MIR SINE MIR 98 256 -6 237 311 0 0 chr15 81888018 81888153 -19492368 + T-rich Low_complexity Low_complexity 1 135 0 22 35 0 0 chr15 81890429 81890458 -19490063 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 81891011 81891033 -19489488 + AT_rich Low_complexity Low_complexity 1 22 0 225 94 0 0 chr15 81892525 81892557 -19487964 + (TG)n Simple_repeat Simple_repeat 1 32 0 217 317 79 0 chr15 81895291 81895392 -19485129 - MIR SINE MIR -70 192 84 219 69 0 0 chr15 81896162 81896191 -19484330 + (A)n Simple_repeat Simple_repeat 1 29 0 243 282 70 14 chr15 81896217 81896288 -19484233 - MIR SINE MIR -177 85 11 432 0 0 0 chr15 81896589 81896637 -19483884 + (CA)n Simple_repeat Simple_repeat 2 49 0 1211 96 6 0 chr15 81897732 81897888 -19482633 + AluSq SINE Alu 1 157 -156 2048 92 14 38 chr15 81897888 81898180 -19482341 - AluSx SINE Alu -25 287 3 402 21 0 0 chr15 81899309 81899356 -19481165 + (TG)n Simple_repeat Simple_repeat 2 48 0 2264 123 3 0 chr15 81899512 81899814 -19480707 - AluSg SINE Alu -7 303 1 409 339 138 21 chr15 81900622 81900955 -19479566 - L1ME4a LINE L1 -4 6117 5746 183 156 0 0 chr15 81900962 81900994 -19479527 + (TG)n Simple_repeat Simple_repeat 2 33 0 2398 101 16 3 chr15 81901129 81901436 -19479085 - AluSx SINE Alu -1 311 1 765 206 149 68 chr15 81901911 81902280 -19478241 - Charlie1a DNA MER1_type 0 1455 1057 1337 161 0 10 chr15 81902309 81902514 -19478007 - AluJb SINE Alu -23 289 87 2042 179 150 91 chr15 81902518 81903081 -19477440 - Charlie1a DNA MER1_type -1847 914 385 2014 155 0 3 chr15 81903081 81903377 -19477144 - AluJb SINE Alu -5 307 13 2042 179 150 91 chr15 81903377 81903435 -19477086 - Charlie1a DNA MER1_type -2376 385 332 1880 175 0 3 chr15 81903435 81903732 -19476789 - AluSx SINE Alu -12 300 5 2042 179 150 91 chr15 81903732 81903910 -19476611 - Charlie1a DNA MER1_type -2429 332 67 22 35 0 0 chr15 81904012 81904041 -19476480 + AT_rich Low_complexity Low_complexity 1 29 0 2329 106 3 3 chr15 81904288 81904589 -19475932 + AluSp SINE Alu 1 301 -12 2150 110 7 13 chr15 81904728 81905038 -19475483 - AluSc SINE Alu -1 308 1 1345 258 131 19 chr15 81905413 81905941 -19474580 - MLT1E LTR MaLR -4 589 3 24 67 0 0 chr15 81906316 81906361 -19474160 + AT_rich Low_complexity Low_complexity 1 45 0 511 258 115 53 chr15 81906761 81906970 -19473551 - L1ME4a LINE L1 -1 6120 5899 2157 121 0 0 chr15 81906979 81907269 -19473252 + AluSg SINE Alu 1 290 -20 408 223 0 0 chr15 81907277 81907380 -19473141 + (CA)n Simple_repeat Simple_repeat 2 104 0 2689 102 17 24 chr15 81908537 81908949 -19471572 + MLT2A1 LTR ERVL 1 409 -35 318 180 0 0 chr15 81908996 81909065 -19471456 + MLT2B2 LTR ERVL 452 515 0 390 273 27 0 chr15 81909104 81909214 -19471307 + MER63 DNA MER1_type 3 741 -95 312 225 14 0 chr15 81909209 81909280 -19471241 + MER63 DNA MER1_type 982 1053 -9 * 213 254 75 0 chr15 81911267 81911334 -19469187 + MIR SINE MIR 74 145 -63 754 180 0 43 chr15 81911846 81911985 -19468536 + FLAM_C SINE Alu 1 133 0 180 0 0 0 chr15 81912360 81912380 -19468141 + (T)n Simple_repeat Simple_repeat 1 20 0 248 312 64 0 chr15 81912617 81912726 -19467795 + L2 LINE L2 3156 3271 -1 249 235 111 0 chr15 81916655 81916736 -19463785 - MER5A DNA MER1_type -53 136 47 234 357 48 8 chr15 81917045 81917171 -19463350 - L2 LINE L2 -223 3049 2919 1289 146 48 10 chr15 81917588 81917794 -19462727 + AluJb SINE Alu 83 296 -16 201 239 43 86 chr15 81918599 81918619 -19461902 - MIR SINE MIR -54 208 189 2302 94 0 7 chr15 81918619 81918916 -19461605 + AluY SINE Alu 1 295 -16 201 239 43 86 chr15 81918916 81919012 -19461509 - MIR SINE MIR -73 189 97 306 175 18 0 chr15 81919328 81919406 -19461115 + MIR SINE MIR 104 183 -62 220 341 12 0 chr15 81919676 81919758 -19460763 - MIR SINE MIR -61 147 65 296 282 12 12 chr15 81923036 81923121 -19457400 - MIR SINE MIR -114 148 64 1518 127 25 20 chr15 81923246 81923491 -19457030 + AluJb SINE Alu 35 280 -32 191 263 50 38 chr15 81923573 81923653 -19456868 + MIR3 SINE MIR 85 165 -43 239 288 190 19 chr15 81925572 81925730 -19454791 + MIR3 SINE MIR 4 192 -64 231 36 0 0 chr15 81928595 81928623 -19451898 + (CCCCCA)n Simple_repeat Simple_repeat 5 32 0 1002 181 126 15 chr15 81929621 81929820 -19450701 - 7SLRNA srpRNA srpRNA -5 315 95 859 49 98 0 chr15 81929828 81929951 -19450570 + LTR15 LTR ERV1 350 484 -9 2215 115 0 0 chr15 81930015 81930302 -19450219 + AluSq SINE Alu 1 287 -26 242 327 116 45 chr15 81930567 81930766 -19449755 - L2 LINE L2 -963 2351 2139 212 263 145 0 chr15 81930861 81930937 -19449584 + L2 LINE L2 3163 3249 -23 363 330 33 71 chr15 81931039 81931221 -19449300 - L1MC4a LINE L1 -1883 5925 5751 270 308 159 28 chr15 81931222 81931404 -19449117 - L2 LINE L2 -1291 2023 1818 225 65 0 0 chr15 81931556 81931587 -19448934 + (TATG)n Simple_repeat Simple_repeat 2 32 0 195 114 0 0 chr15 81931816 81931851 -19448670 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 186 43 0 0 chr15 81931852 81931875 -19448646 + (GA)n Simple_repeat Simple_repeat 1 23 0 832 112 0 0 chr15 81931875 81931982 -19448539 - FLAM_C SINE Alu -36 107 1 236 131 50 20 chr15 81932393 81932492 -19448029 + (TA)n Simple_repeat Simple_repeat 1 102 0 1050 189 0 6 chr15 81932501 81932681 -19447840 - AluSx SINE Alu -2 310 132 365 191 0 0 chr15 81932681 81932744 -19447777 - AluSx SINE Alu -239 64 2 242 237 75 11 chr15 81932836 81932929 -19447592 - L1P LINE L1 -1656 4490 4392 298 226 60 94 chr15 81933086 81933168 -19447353 + L1ME4a LINE L1 5812 5895 -226 2567 68 0 3 chr15 81933168 81933479 -19447042 + AluY SINE Alu 1 310 -1 298 226 60 94 chr15 81933479 81933714 -19446807 + L1ME4a LINE L1 5895 6118 -3 1216 177 0 9 chr15 81933795 81934010 -19446511 + AluJb SINE Alu 99 311 -1 746 209 236 12 chr15 81934037 81934363 -19446158 + Charlie1 DNA MER1_type 2363 2761 0 2223 131 0 0 chr15 81934831 81935128 -19445393 + AluSx SINE Alu 1 297 -15 255 31 0 0 chr15 81935266 81935298 -19445223 + (CA)n Simple_repeat Simple_repeat 2 33 0 432 0 0 0 chr15 81936605 81936653 -19443868 + (CA)n Simple_repeat Simple_repeat 2 49 0 2148 168 107 7 chr15 81937331 81937789 -19442732 - LTR9B LTR ERV1 0 644 141 1172 110 0 0 chr15 81937792 81937947 -19442574 + AluSg/x SINE Alu 154 308 -2 432 211 0 11 chr15 81937947 81938042 -19442479 - LTR9B LTR ERV1 -544 100 7 1122 178 30 69 chr15 81938605 81939042 -19441479 + LTR10B LTR ERV1 1 542 -5 2380 91 0 28 chr15 81939042 81939361 -19441160 - AluY SINE Alu -1 310 1 3732 182 78 6 chr15 81939376 81939918 -19440603 + LTR10B-int LTR ERV1 1 618 -6031 297 0 0 0 chr15 81939918 81939951 -19440570 + (GGAAA)n Simple_repeat Simple_repeat 5 37 0 3732 182 78 6 chr15 81939951 81940190 -19440331 + LTR10B-int LTR ERV1 618 838 -5811 26161 242 26 25 chr15 81940300 81946998 -19433523 + LTR10B-int LTR ERV1 1074 7783 -2 1333 225 252 9 chr15 81947002 81947442 -19433079 + LTR10B LTR ERV1 1 547 0 281 83 0 0 chr15 81948937 81948985 -19431536 + AluSp/q SINE Alu 256 303 0 1156 256 83 0 chr15 81948985 81949392 -19431129 + L1M4 LINE L1 4167 4607 -1539 1496 171 40 0 chr15 81949401 81949653 -19430868 + AluJo SINE Alu 16 277 -35 2440 87 0 0 chr15 81949653 81949950 -19430571 - AluSx SINE Alu -14 298 1 2353 89 14 0 chr15 81950141 81950432 -19430089 + AluSg SINE Alu 1 295 -15 1866 52 0 9 chr15 81950625 81950856 -19429665 - L1PA7 LINE L1 0 6154 5926 188 302 240 0 chr15 81951566 81951662 -19428859 - MIR SINE MIR -124 138 20 593 154 73 16 chr15 81951736 81951859 -19428662 + FLAM_C SINE Alu 2 131 -2 183 156 0 0 chr15 81953334 81953366 -19427155 + A-rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr15 81953731 81953752 -19426769 + GC_rich Low_complexity Low_complexity 1 21 0 217 266 0 16 chr15 81954137 81954201 -19426320 + (CGG)n Simple_repeat Simple_repeat 1 63 0 181 219 0 0 chr15 81954843 81954875 -19425646 - MIR3 SINE MIR -19 189 158 649 220 46 37 chr15 81955110 81955360 -19425161 + L1ME3 LINE L1 5920 6164 0 2362 97 0 28 chr15 81955598 81955918 -19424603 - AluSq SINE Alu -2 311 1 185 316 20 31 chr15 81955957 81956055 -19424466 - L3 LINE CR1 -392 1185 1089 1396 126 45 5 chr15 81956057 81956279 -19424242 + AluJb SINE Alu 1 231 -81 826 92 202 81 chr15 81957177 81957350 -19423171 + MER46A DNA MER2_type 8 201 -35 754 234 7 7 chr15 81957641 81957795 -19422726 - AluJb SINE Alu -157 155 2 871 187 7 7 chr15 81958530 81958685 -19421836 - MER5A DNA MER1_type -33 156 2 2407 103 0 0 chr15 81959013 81959323 -19421198 - AluSx SINE Alu -2 310 1 220 241 19 0 chr15 81959639 81959693 -19420828 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 263 249 47 150 chr15 81961952 81962165 -19418356 + MIR SINE MIR 2 150 -58 271 333 127 0 chr15 81963130 81963280 -19417241 + MIR3 SINE MIR 31 199 -9 356 294 59 25 chr15 81963286 81963405 -19417116 + L2 LINE L2 3188 3310 -3 257 222 37 0 chr15 81963737 81963791 -19416730 + MIR SINE MIR 94 149 -59 290 343 0 6 chr15 81964730 81964908 -19415613 + GA-rich Low_complexity Low_complexity 2 178 0 197 217 4 0 chr15 81965182 81965227 -19415294 + MIR SINE MIR 100 146 -62 1986 138 6 31 chr15 81965763 81966081 -19414440 + AluSx SINE Alu 2 311 -1 294 301 169 0 chr15 81966133 81966269 -19414252 + MIR SINE MIR 98 256 -6 275 315 0 0 chr15 81967054 81967219 -19413302 + T-rich Low_complexity Low_complexity 1 165 0 22 35 0 0 chr15 81969497 81969526 -19410995 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 81970079 81970101 -19410420 + AT_rich Low_complexity Low_complexity 1 22 0 315 71 0 0 chr15 81971592 81971634 -19408887 + (TG)n Simple_repeat Simple_repeat 1 42 0 217 317 79 0 chr15 81974379 81974480 -19406041 - MIR SINE MIR -70 192 84 243 282 70 14 chr15 81975300 81975371 -19405150 - MIR SINE MIR -177 85 11 378 0 0 0 chr15 81975672 81975714 -19404807 + (CA)n Simple_repeat Simple_repeat 2 43 0 1211 96 6 0 chr15 81976808 81976964 -19403557 + AluSq SINE Alu 1 157 -156 2044 92 14 38 chr15 81976964 81977256 -19403265 - AluSx SINE Alu -25 287 3 540 0 0 0 chr15 81978385 81978445 -19402076 + (TG)n Simple_repeat Simple_repeat 1 60 0 2256 123 3 0 chr15 81978602 81978904 -19401617 - AluSg SINE Alu -7 303 1 356 304 137 26 chr15 81979709 81979936 -19400585 - L1ME4a LINE L1 -4 6117 5866 222 118 0 0 chr15 81980049 81980083 -19400438 + (TG)n Simple_repeat Simple_repeat 2 35 0 2350 98 17 3 chr15 81980218 81980515 -19400006 - AluSx SINE Alu -11 301 1 771 214 146 65 chr15 81980990 81981359 -19399162 - Charlie1 DNA MER1_type 0 2761 2363 1328 162 0 10 chr15 81981389 81981593 -19398928 - AluJb SINE Alu -24 288 87 2084 185 114 91 chr15 81981597 81982165 -19398356 - Charlie1 DNA MER1_type -541 2220 1667 1911 164 0 3 chr15 81982165 81982457 -19398064 - AluJb SINE Alu -9 303 13 2084 185 114 91 chr15 81982457 81982515 -19398006 - Charlie1 DNA MER1_type -1094 1667 1612 2014 155 0 3 chr15 81982515 81982812 -19397709 - AluSx SINE Alu -12 300 5 2084 185 114 91 chr15 81982812 81982961 -19397560 - Charlie1 DNA MER1_type -1149 1612 1426 23 33 0 0 chr15 81983095 81983125 -19397396 + AT_rich Low_complexity Low_complexity 1 30 0 2472 90 3 3 chr15 81983371 81983682 -19396839 + AluSp SINE Alu 1 311 -2 2249 97 6 13 chr15 81983858 81984169 -19396352 - AluSc SINE Alu 0 309 1 1346 258 131 19 chr15 81984544 81985072 -19395449 - MLT1E LTR MaLR -4 589 3 239 248 117 53 chr15 81985893 81986099 -19394422 - L1ME4a LINE L1 0 6121 5903 2157 121 0 0 chr15 81986112 81986402 -19394119 + AluSg SINE Alu 1 290 -20 360 226 0 0 chr15 81986410 81986503 -19394018 + (CA)n Simple_repeat Simple_repeat 2 94 0 2668 104 17 24 chr15 81987661 81988073 -19392448 + MLT2A1 LTR ERVL 1 409 -35 318 178 0 0 chr15 81988105 81988171 -19392350 + MLT2B2 LTR ERVL 455 515 0 390 273 27 0 chr15 81988210 81988320 -19392201 + MER63 DNA MER1_type 3 741 -95 312 225 14 0 chr15 81988315 81988386 -19392135 + MER63 DNA MER1_type 980 1051 -9 * 213 254 75 0 chr15 81990373 81990440 -19390081 + MIR SINE MIR 74 145 -63 754 180 0 43 chr15 81990952 81991091 -19389430 + FLAM_C SINE Alu 1 133 0 189 0 0 0 chr15 81991466 81991487 -19389034 + (T)n Simple_repeat Simple_repeat 1 21 0 248 312 64 0 chr15 81991724 81991833 -19388688 + L2 LINE L2 3156 3271 -1 222 313 96 0 chr15 81995761 81995844 -19384677 + MER5A DNA MER1_type 66 156 -33 219 327 88 6 chr15 81996120 81996279 -19384242 - L2 LINE L2 -182 3090 2919 288 325 8 25 chr15 81997768 81997888 -19382633 - MIR SINE MIR -114 148 31 1420 143 25 20 chr15 81997937 81998182 -19382339 + AluJo SINE Alu 35 280 -32 192 269 115 0 chr15 81998237 81998315 -19382206 + MIR SINE MIR 59 145 -63 255 277 197 6 chr15 81999978 82000136 -19380385 + MIR SINE MIR 4 192 -64 198 0 0 0 chr15 82002758 82002780 -19377741 + (CCCCCA)n Simple_repeat Simple_repeat 5 26 0 967 179 143 15 chr15 82003810 82004006 -19376515 - 7SLRNA srpRNA srpRNA -5 315 95 213 288 204 0 chr15 82004761 82004893 -19375628 - MIR SINE MIR -6 256 98 1964 146 7 29 chr15 82004945 82005254 -19375267 - AluSx SINE Alu -6 306 5 189 217 4 0 chr15 82005790 82005835 -19374686 - MIR SINE MIR -62 146 100 198 0 0 0 chr15 82006273 82006295 -19374226 + (A)n Simple_repeat Simple_repeat 1 22 0 210 245 38 0 chr15 82006433 82006486 -19374035 - MIR SINE MIR -59 149 95 315 276 60 26 chr15 82006814 82006930 -19373591 - L2 LINE L2 -3 3310 3191 234 338 134 0 chr15 82006939 82007081 -19373440 - MIR3 SINE MIR -17 191 31 182 299 57 88 chr15 82007960 82008154 -19372367 - MIR SINE MIR -3 259 72 8546 36 0 0 chr15 82009127 82010971 -19369550 + L1PA4 LINE L1 4308 6152 -3 427 277 179 59 chr15 82010976 82011390 -19369131 + L1M4 LINE L1 2963 3389 -2757 969 185 42 28 chr15 82011452 82011668 -19368853 - MER20 DNA MER1_type 0 219 1 405 306 63 72 chr15 82012034 82012479 -19368042 + HAL1 LINE L1 23 463 -2044 1617 188 3 40 chr15 82012618 82012966 -19367555 - AluJb SINE Alu 0 337 1 2295 107 20 0 chr15 82013031 82013329 -19367192 + AluSp SINE Alu 1 304 -9 1502 136 0 14 chr15 82013489 82013729 -19366792 + AluSg/x SINE Alu 89 312 0 812 203 13 0 chr15 82014044 82014197 -19366324 + MER5A DNA MER1_type 2 156 -33 1550 201 4 4 chr15 82014942 82015216 -19365305 + AluJo SINE Alu 1 274 -38 581 133 31 39 chr15 82015330 82015558 -19364963 + GA-rich Low_complexity Low_complexity 1 226 0 363 247 140 35 chr15 82015588 82016006 -19364515 + L1ME LINE L1 5189 5657 -464 235 267 35 12 chr15 82016073 82016159 -19364362 + L1ME LINE L1 5798 5885 -236 25600 48 2 3 chr15 82016511 82019870 -19360651 + L1P LINE L1 707 4062 -2084 955 139 15 0 chr15 82019985 82020122 -19360399 + AluJb SINE Alu 158 296 -16 1678 187 163 44 chr15 82020122 82020693 -19359828 + Charlie1 DNA MER1_type 1582 2220 -541 1347 167 0 9 chr15 82020697 82020924 -19359597 + AluJb SINE Alu 87 311 -1 653 227 236 12 chr15 82020947 82021273 -19359248 + Charlie1 DNA MER1_type 2363 2761 0 2225 121 0 0 chr15 82021750 82022040 -19358481 + AluSq SINE Alu 1 290 -23 345 321 144 39 chr15 82022212 82022517 -19358004 + L1ME4a LINE L1 5740 6076 -45 2185 123 7 0 chr15 82023366 82023667 -19356854 + AluSg SINE Alu 1 303 -7 486 0 0 0 chr15 82023831 82023885 -19356636 + (CA)n Simple_repeat Simple_repeat 2 55 0 920 97 30 8 chr15 82025013 82025147 -19355374 + AluSq/x SINE Alu 3 139 -174 387 127 0 0 chr15 82026092 82026155 -19354366 + (CA)n Simple_repeat Simple_repeat 1 63 0 22 0 0 0 chr15 82027638 82027660 -19352861 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr15 82028213 82028242 -19352279 + AT_rich Low_complexity Low_complexity 1 29 0 2013 144 29 29 chr15 82029078 82029453 -19351068 - THE1C LTR MaLR 0 375 1 1461 178 37 7 chr15 82029798 82030067 -19350454 - AluJo SINE Alu -35 277 1 1003 243 99 12 chr15 82030067 82030474 -19350047 - L1M4 LINE L1 -1532 4614 4169 2342 98 0 0 chr15 82030474 82030781 -19349740 - AluSq SINE Alu -6 307 1 511 252 0 3 chr15 82030834 82030997 -19349524 + MER58A DNA MER1_type 1 204 -20 559 301 130 25 chr15 82032181 82032503 -19348018 + L2 LINE L2 2956 3311 -2 286 286 167 30 chr15 82032592 82032760 -19347761 + MIR SINE MIR 21 211 -51 1300 119 49 35 chr15 82033235 82033328 -19347193 - MER30 DNA MER1_type 0 230 140 2304 94 0 0 chr15 82033328 82033625 -19346896 + AluSx SINE Alu 1 297 -15 1300 119 49 35 chr15 82033625 82033757 -19346764 - MER30 DNA MER1_type -90 140 2 207 0 0 0 chr15 82036781 82036804 -19343717 + (TTA)n Simple_repeat Simple_repeat 2 24 0 852 142 21 7 chr15 82036812 82036953 -19343568 - FRAM SINE Alu -36 140 1 851 214 33 5 chr15 82036953 82037168 -19343353 - L1MB7 LINE L1 -46 6138 5918 216 109 55 36 chr15 82037168 82037223 -19343298 + (TATG)n Simple_repeat Simple_repeat 1 56 0 560 101 51 13 chr15 82037227 82037385 -19343136 + (CATAT)n Simple_repeat Simple_repeat 2 165 0 425 106 11 58 chr15 82037450 82037638 -19342883 + (TA)n Simple_repeat Simple_repeat 1 179 0 3211 179 56 10 chr15 82037648 82038730 -19341791 - L1MB7 LINE L1 -253 5925 4796 1516 227 38 52 chr15 82038718 82039317 -19341204 - L1MB7 LINE L1 -1639 4507 3917 * 1296 154 19 31 chr15 82039326 82039585 -19340936 + MLT1D LTR MaLR 248 503 -2 203 186 0 23 chr15 82039950 82039993 -19340528 + CT-rich Low_complexity Low_complexity 3 44 0 315 0 0 0 chr15 82039993 82040028 -19340493 + (TG)n Simple_repeat Simple_repeat 2 36 0 1663 141 67 27 chr15 82041053 82041350 -19339171 - AluJb SINE Alu -3 309 1 504 200 121 0 chr15 82041378 82041518 -19339003 - L1MC5 LINE L1 -110 7851 7695 193 189 27 0 chr15 82041732 82041769 -19338752 - L2 LINE L2 -14 3299 3262 994 186 34 69 chr15 82043688 82044128 -19336393 - LTR10B LTR ERV1 0 547 1 24611 238 29 25 chr15 82044132 82050820 -19329701 - HERVI LTR ERV1 -2 7783 1074 676 204 0 0 chr15 82050879 82051016 -19329505 - HERVI LTR ERV1 -6936 849 713 429 200 0 11 chr15 82051178 82051273 -19329248 + LTR9B LTR ERV1 7 100 -544 1167 97 0 0 chr15 82051273 82051428 -19329093 - AluSg/x SINE Alu -2 310 156 2117 174 102 7 chr15 82051431 82051891 -19328630 + LTR9B LTR ERV1 141 644 0 396 0 0 0 chr15 82052572 82052616 -19327905 + (TG)n Simple_repeat Simple_repeat 2 45 0 333 0 0 0 chr15 82053935 82053972 -19326549 + (GA)n Simple_repeat Simple_repeat 1 37 0 306 0 0 0 chr15 82053971 82054005 -19326516 + (TG)n Simple_repeat Simple_repeat 2 35 0 * 2238 127 0 0 chr15 82054138 82054437 -19326084 - AluSx SINE Alu -13 299 1 633 200 148 8 chr15 82054914 82055240 -19325281 - Charlie1 DNA MER1_type 0 2761 2363 1168 181 0 9 chr15 82055263 82055478 -19325043 - AluJb SINE Alu -1 311 99 326 210 70 79 chr15 82055559 82055773 -19324748 - L1ME4a LINE L1 -2 6119 5908 2376 82 0 3 chr15 82055788 82056091 -19324430 - AluY SINE Alu -9 302 1 457 331 124 19 chr15 82056149 82056511 -19324010 + L1M4 LINE L1 4188 4587 -1559 327 238 0 0 chr15 82056515 82056578 -19323943 + AluS SINE Alu 2 64 -239 932 177 22 22 chr15 82056578 82056759 -19323762 + AluJb SINE Alu 132 312 0 243 130 29 14 chr15 82056764 82056833 -19323688 + (TA)n Simple_repeat Simple_repeat 1 70 0 21 0 0 0 chr15 82056907 82056928 -19323593 + AT_rich Low_complexity Low_complexity 1 21 0 813 138 9 0 chr15 82057242 82057358 -19323163 + FLAM_C SINE Alu 1 117 -26 201 108 0 0 chr15 82057362 82057399 -19323122 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 206 323 223 20 chr15 82057728 82057979 -19322542 + L2 LINE L2 1722 2023 -1291 328 286 113 47 chr15 82057979 82058192 -19322329 + L1MC4a LINE L1 5747 5973 -1835 194 235 112 51 chr15 82058253 82058351 -19322170 - L2 LINE L2 -23 3249 3146 210 351 130 0 chr15 82058436 82058567 -19321954 + L2 LINE L2 2150 2297 -1017 1661 141 4 0 chr15 82058951 82059218 -19321303 - AluSq SINE Alu 0 336 69 3045 95 16 36 chr15 82059283 82059747 -19320774 - LTR15 LTR ERV1 -6 487 32 6871 53 0 9 chr15 82059747 82060707 -19319814 - L1PA5 LINE L1 0 6154 5179 3045 95 16 36 chr15 82060707 82060739 -19319782 - LTR15 LTR ERV1 -461 32 1 234 314 197 0 chr15 82061297 82061434 -19319087 - MIR SINE MIR -18 244 81 247 250 0 28 chr15 82062446 82062518 -19318003 - HAL1 LINE L1 -213 2294 2225 21 0 0 0 chr15 82062648 82062669 -19317852 + AT_rich Low_complexity Low_complexity 1 21 0 328 295 148 21 chr15 82062698 82062935 -19317586 - HAL1 LINE L1 -604 1903 1637 928 206 14 51 chr15 82062952 82063166 -19317355 + MIR SINE MIR 28 233 -29 845 228 101 35 chr15 82063195 82063590 -19316931 - HAL1 LINE L1 -877 1630 1210 445 222 137 98 chr15 82063706 82064180 -19316341 - MLT1H LTR MaLR 0 555 76 516 248 104 30 chr15 82064247 82064449 -19316072 - HAL1 LINE L1 -1437 1070 854 2414 84 0 0 chr15 82064476 82064774 -19315747 - AluSp SINE Alu -15 298 1 1620 175 0 50 chr15 82064845 82065188 -19315333 + AluJb SINE Alu 1 328 0 230 297 81 61 chr15 82065463 82065773 -19314748 - HAL1 LINE L1 -2167 340 25 990 190 42 28 chr15 82066136 82066352 -19314169 + MER20 DNA MER1_type 1 219 0 368 237 205 57 chr15 82066556 82066839 -19313682 - L1M4 LINE L1 -2875 3271 2947 2376 108 0 0 chr15 82066915 82067220 -19313301 + AluSp SINE Alu 2 306 -7 807 237 89 22 chr15 82067446 82067762 -19312759 - L1ME3A LINE L1 -220 5950 5614 245 280 93 56 chr15 82068079 82068186 -19312335 - L2 LINE L2 -2 3270 3160 2089 130 0 7 chr15 82068345 82068638 -19311883 - AluSc SINE Alu -8 301 11 462 319 73 47 chr15 82068662 82068963 -19311558 - HAL1 LINE L1 -1385 1122 814 255 208 20 139 chr15 82069545 82069646 -19310875 + MIR3 SINE MIR 70 158 -50 2110 126 3 3 chr15 82070801 82071103 -19309418 + AluSx SINE Alu 1 302 -10 955 217 129 59 chr15 82071500 82071841 -19308680 - MLT1A1 LTR MaLR 0 365 1 1681 127 60 11 chr15 82072144 82072428 -19308093 - AluJo SINE Alu -14 298 1 668 183 35 0 chr15 82073433 82073548 -19306973 - FRAM SINE Alu -27 149 31 312 327 77 19 chr15 82073843 82074051 -19306470 - L1ME LINE L1 -344 5777 5558 2123 128 0 7 chr15 82074078 82074404 -19306117 + AluSx SINE Alu 1 324 0 1584 209 0 3 chr15 82074938 82075225 -19305296 - AluJo SINE Alu -26 286 1 181 299 63 31 chr15 82075571 82075698 -19304823 + MIR SINE MIR 107 237 -25 198 0 0 0 chr15 82076693 82076715 -19303806 + (T)n Simple_repeat Simple_repeat 1 22 0 1981 160 0 10 chr15 82076757 82077070 -19303451 - AluSx SINE Alu -2 310 1 806 169 0 69 chr15 82077698 82077858 -19302663 + AluJb SINE Alu 146 294 -18 189 0 0 0 chr15 82078277 82078298 -19302223 + (TAA)n Simple_repeat Simple_repeat 2 22 0 882 255 136 6 chr15 82078433 82078804 -19301717 + L1MC4 LINE L1 5521 5797 -373 619 227 0 0 chr15 82078817 82078936 -19301585 + MER106A DNA MER1_type 1 119 -117 244 246 69 74 chr15 82079044 82079219 -19301302 + L1ME3A LINE L1 5987 6160 -10 2267 111 3 7 chr15 82079762 82080069 -19300452 + AluSq SINE Alu 1 306 -7 437 313 59 53 chr15 82080675 82080995 -19299526 + L3 LINE CR1 1055 1376 -201 258 312 175 11 chr15 82081304 82081493 -19299028 - L1MDa LINE L1 -4512 2028 1809 301 291 32 6 chr15 82081675 82081833 -19298688 - L1MDa LINE L1 -5120 1423 1262 234 0 0 0 chr15 82082796 82082822 -19297699 + (T)n Simple_repeat Simple_repeat 1 26 0 840 153 0 0 chr15 82082833 82082957 -19297564 - FLAM_C SINE Alu -17 126 3 568 190 197 0 chr15 82082980 82083122 -19297399 - MER5A DNA MER1_type -19 170 1 314 198 25 0 chr15 82083164 82083245 -19297276 + (CATA)n Simple_repeat Simple_repeat 3 85 0 1607 190 3 3 chr15 82084065 82084354 -19296167 - AluJb SINE Alu -23 289 1 21 0 0 0 chr15 82084366 82084387 -19296134 + AT_rich Low_complexity Low_complexity 1 21 0 2138 125 0 7 chr15 82085761 82086065 -19294456 + AluSx SINE Alu 1 302 -10 1476 183 10 14 chr15 82086893 82087182 -19293339 - L1MB7 LINE L1 -18 6166 5879 2048 73 0 8 chr15 82089444 82089741 -19290780 + AluY SINE Alu 28 322 0 524 210 187 13 chr15 82090578 82090729 -19289792 - MIR SINE MIR -64 198 30 221 0 35 0 chr15 82090863 82090892 -19289629 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 516 282 61 97 chr15 82091311 82091710 -19288811 + L1MEd LINE L1 561 932 -5187 1439 152 27 98 chr15 82091710 82092045 -19288476 + AluJb SINE Alu 1 311 -1 516 282 61 97 chr15 82092045 82092252 -19288269 + L1MEd LINE L1 932 1145 -4974 408 297 119 40 chr15 82092311 82093076 -19287445 + L1MEd LINE L1 2112 2936 -3193 183 162 0 0 chr15 82093083 82093120 -19287401 + CT-rich Low_complexity Low_complexity 6 42 0 218 286 124 19 chr15 82093270 82093375 -19287146 - L2 LINE L2 -18 3295 3180 212 255 0 0 chr15 82093375 82093426 -19287095 - L2 LINE L2 -1027 2287 2237 260 247 47 0 chr15 82093632 82093717 -19286804 + MIR SINE MIR 60 148 -114 372 299 90 37 chr15 82093910 82094044 -19286477 + L2 LINE L2 3117 3257 -15 2169 134 0 0 chr15 82094125 82094423 -19286098 - AluSx SINE Alu -14 298 1 517 207 9 17 chr15 82095025 82095141 -19285380 + FLAM_C SINE Alu 1 115 -18 946 258 56 20 chr15 82095665 82096006 -19284515 + L1MC4a LINE L1 5691 6043 -1765 241 221 47 23 chr15 82096653 82096739 -19283782 - L1MB7 LINE L1 -236 5885 5798 390 242 129 43 chr15 82096764 82097226 -19283295 - L1MB7 LINE L1 -461 5701 5189 560 191 13 33 chr15 82097253 82097491 -19283030 + CT-rich Low_complexity Low_complexity 1 233 0 1503 201 4 4 chr15 82097605 82097879 -19282642 - AluJo SINE Alu -38 274 1 845 195 7 0 chr15 82098623 82098777 -19281744 - MER5A DNA MER1_type -33 156 2 2178 115 0 0 chr15 82099113 82099425 -19281096 - AluSx SINE Alu 0 312 1 235 274 36 12 chr15 82102143 82102255 -19278266 + MIR SINE MIR 72 150 -58 190 341 138 0 chr15 82103220 82103358 -19277163 + MIR3 SINE MIR 31 187 -21 293 252 76 42 chr15 82103376 82103495 -19277026 + L2 LINE L2 3188 3310 -3 230 222 37 0 chr15 82103827 82103881 -19276640 + MIR SINE MIR 94 149 -59 1959 138 6 31 chr15 82105260 82105578 -19274943 + AluSx SINE Alu 2 311 -1 239 296 82 0 chr15 82105633 82105731 -19274790 + MIR SINE MIR 101 206 -56 216 203 147 7 chr15 82106562 82106705 -19273816 + (TTTAA)n Simple_repeat Simple_repeat 3 165 0 22 35 0 0 chr15 82108923 82108952 -19271569 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 82109505 82109527 -19270994 + AT_rich Low_complexity Low_complexity 1 22 0 246 128 0 0 chr15 82111009 82111048 -19269473 + (TG)n Simple_repeat Simple_repeat 1 39 0 183 271 17 0 chr15 82113825 82113884 -19266637 - MIR SINE MIR -64 144 85 213 296 70 14 chr15 82114696 82114767 -19265754 - MIR SINE MIR -177 85 11 450 0 0 0 chr15 82115068 82115118 -19265403 + (CA)n Simple_repeat Simple_repeat 2 51 0 1198 96 6 0 chr15 82116168 82116324 -19264197 + AluSq SINE Alu 1 157 -156 2020 92 14 38 chr15 82116324 82116616 -19263905 - AluSx SINE Alu -25 287 3 240 35 0 0 chr15 82117741 82117770 -19262751 + (TG)n Simple_repeat Simple_repeat 2 30 0 2228 123 3 0 chr15 82117932 82118234 -19262287 - AluSg SINE Alu -7 303 1 201 147 0 0 chr15 82119382 82119416 -19261105 + (TG)n Simple_repeat Simple_repeat 2 35 0 2356 104 16 3 chr15 82119553 82119861 -19260660 - AluSx SINE Alu 0 312 1 863 201 152 70 chr15 82120336 82120705 -19259816 - Charlie1a DNA MER1_type 0 1455 1057 1290 171 0 10 chr15 82120736 82120941 -19259580 - AluJb SINE Alu -23 289 87 2225 176 150 91 chr15 82120945 82121508 -19259013 - Charlie1a DNA MER1_type -1847 914 385 1954 149 0 10 chr15 82121508 82121803 -19258718 - AluJb SINE Alu -8 304 13 2225 176 150 91 chr15 82121803 82121861 -19258660 - Charlie1a DNA MER1_type -2376 385 332 1884 168 0 3 chr15 82121861 82122158 -19258363 - AluSx SINE Alu -12 300 5 2225 176 150 91 chr15 82122158 82122336 -19258185 - Charlie1a DNA MER1_type -2429 332 67 2380 103 3 3 chr15 82122714 82123026 -19257495 + AluSp SINE Alu 1 312 -1 2094 108 7 13 chr15 82123168 82123475 -19257046 - AluSc SINE Alu -4 305 1 1297 254 131 19 chr15 82123850 82124378 -19256143 - MLT1E LTR MaLR -4 589 3 509 254 110 48 chr15 82125200 82125409 -19255112 - L1ME4a LINE L1 -1 6120 5899 2148 121 0 0 chr15 82125418 82125708 -19254813 + AluSg SINE Alu 1 290 -20 339 237 0 0 chr15 82125716 82125809 -19254712 + (CA)n Simple_repeat Simple_repeat 2 94 0 2668 102 17 24 chr15 82126969 82127381 -19253140 + MLT2A1 LTR ERVL 1 409 -35 328 261 34 11 chr15 82127381 82127469 -19253052 - L1MC4 LINE L1 -1339 6703 6614 317 180 0 0 chr15 82127470 82127539 -19252982 + MLT2B2 LTR ERVL 452 515 0 346 282 27 0 chr15 82127578 82127688 -19252833 + MER63 DNA MER1_type 3 741 -95 303 225 14 0 chr15 82127683 82127754 -19252767 + MER63 DNA MER1_type 982 1053 -9 * 205 248 92 55 chr15 82129699 82129808 -19250713 + MIR SINE MIR 33 145 -63 806 190 0 29 chr15 82130320 82130457 -19250064 + FLAM_C SINE Alu 1 133 0 180 0 0 0 chr15 82130833 82130853 -19249668 + (T)n Simple_repeat Simple_repeat 1 20 0 270 312 64 0 chr15 82131091 82131200 -19249321 + L2 LINE L2 3156 3271 -1 274 235 111 0 chr15 82135111 82135192 -19245329 - MER5A DNA MER1_type -53 136 47 265 342 60 20 chr15 82135489 82135638 -19244883 - L2 LINE L2 -208 3064 2910 1242 145 48 14 chr15 82136043 82136250 -19244271 + AluJb SINE Alu 83 296 -16 231 233 38 113 chr15 82137045 82137065 -19243456 - MIR SINE MIR -54 208 188 2291 94 0 7 chr15 82137065 82137362 -19243159 + AluY SINE Alu 1 295 -16 231 233 38 113 chr15 82137362 82137474 -19243047 - MIR SINE MIR -74 188 86 318 175 18 0 chr15 82137774 82137852 -19242669 + MIR SINE MIR 104 183 -62 255 329 12 0 chr15 82138122 82138204 -19242317 - MIR SINE MIR -61 147 65 216 0 0 0 chr15 82140721 82140745 -19239776 + (CAGGG)n Simple_repeat Simple_repeat 5 28 0 307 277 12 12 chr15 82141487 82141570 -19238951 - MIR SINE MIR -114 148 66 1518 127 25 20 chr15 82141697 82141942 -19238579 + AluJb SINE Alu 35 280 -32 191 263 50 38 chr15 82142023 82142103 -19238418 + MIR3 SINE MIR 85 165 -43 240 286 190 19 chr15 82144006 82144164 -19236357 + MIR SINE MIR 4 192 -64 935 184 143 15 chr15 82148094 82148290 -19232231 - 7SLRNA srpRNA srpRNA -5 315 95 914 40 89 0 chr15 82148298 82148422 -19232099 + LTR15 LTR ERV1 350 484 -9 2200 118 0 0 chr15 82148486 82148773 -19231748 + AluSq SINE Alu 1 287 -26 180 0 0 0 chr15 82148831 82148851 -19231670 + (CA)n Simple_repeat Simple_repeat 1 20 0 242 327 116 45 chr15 82149044 82149243 -19231278 - L2 LINE L2 -963 2351 2139 212 263 145 0 chr15 82149338 82149414 -19231107 + L2 LINE L2 3163 3249 -23 317 367 34 45 chr15 82149516 82149693 -19230828 - L1MC4a LINE L1 -1883 5925 5751 242 313 159 28 chr15 82149694 82149876 -19230645 - L2 LINE L2 -1291 2023 1818 225 65 0 0 chr15 82150028 82150059 -19230462 + (TATG)n Simple_repeat Simple_repeat 2 32 0 195 114 0 0 chr15 82150288 82150323 -19230198 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 186 43 0 0 chr15 82150324 82150347 -19230174 + (GA)n Simple_repeat Simple_repeat 1 23 0 855 103 0 0 chr15 82150347 82150454 -19230067 - FLAM_C SINE Alu -36 107 1 236 131 50 20 chr15 82150867 82150966 -19229555 + (TA)n Simple_repeat Simple_repeat 1 102 0 1097 171 0 6 chr15 82150983 82151158 -19229363 - AluSx SINE Alu -7 303 130 365 191 0 0 chr15 82151158 82151221 -19229300 - AluSx SINE Alu -239 64 2 230 247 75 11 chr15 82151313 82151406 -19229115 - L1P LINE L1 -1656 4490 4392 330 314 101 18 chr15 82151419 82151588 -19228933 - L1M4 LINE L1 -1773 4373 4191 2453 76 0 3 chr15 82151646 82151949 -19228572 + AluY SINE Alu 1 302 -9 225 0 0 0 chr15 82151949 82151974 -19228547 + (TA)n Simple_repeat Simple_repeat 2 26 0 359 224 61 79 chr15 82151974 82152202 -19228319 + L1ME4a LINE L1 5895 6118 -3 1214 178 0 9 chr15 82152283 82152497 -19228024 + AluJb SINE Alu 99 310 -2 234 234 202 16 chr15 82152531 82152655 -19227866 + Charlie1 DNA MER1_type 2363 2509 -252 746 131 41 7 chr15 82152712 82152857 -19227664 + Charlie1 DNA MER1_type 2612 2761 0 2239 135 0 0 chr15 82153325 82153629 -19226892 + AluSx SINE Alu 1 304 -8 309 26 0 0 chr15 82153765 82153803 -19226718 + (CA)n Simple_repeat Simple_repeat 2 39 0 306 0 0 0 chr15 82155111 82155145 -19225376 + (CA)n Simple_repeat Simple_repeat 2 35 0 2148 168 107 7 chr15 82155823 82156281 -19224240 - LTR9B LTR ERV1 0 644 141 1172 110 0 0 chr15 82156284 82156439 -19224082 + AluSg/x SINE Alu 154 308 -2 432 211 0 11 chr15 82156439 82156534 -19223987 - LTR9B LTR ERV1 -544 100 7 1098 180 30 69 chr15 82157097 82157534 -19222987 + LTR10B LTR ERV1 1 542 -5 2371 91 0 28 chr15 82157534 82157852 -19222669 - AluY SINE Alu -2 309 1 3232 191 27 40 chr15 82157867 82158419 -19222102 + LTR10B-int LTR ERV1 1 555 -6265 955 79 0 53 chr15 82158419 82158609 -19221912 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 3232 191 27 40 chr15 82158609 82158901 -19221620 + LTR10B-int LTR ERV1 555 849 -5971 26153 242 27 25 chr15 82158960 82165659 -19214862 + LTR10B-int LTR ERV1 1074 7783 -2 1333 225 252 9 chr15 82165663 82166103 -19214418 + LTR10B LTR ERV1 1 547 0 547 193 121 0 chr15 82167541 82167681 -19212840 + L1MC5 LINE L1 7695 7851 -110 1676 149 49 39 chr15 82167709 82168017 -19212504 + AluJb SINE Alu 1 311 -1 351 0 0 0 chr15 82169047 82169086 -19211435 + (CA)n Simple_repeat Simple_repeat 2 40 0 217 163 0 23 chr15 82169086 82169129 -19211392 + GA-rich Low_complexity Low_complexity 3 44 0 1307 154 19 31 chr15 82169494 82169753 -19210768 - MLT1D LTR MaLR -2 503 248 1643 230 38 52 chr15 82169762 82170361 -19210160 + L1MB7 LINE L1 3917 4507 -1639 * 3321 181 53 6 chr15 82170349 82171431 -19209090 + L1MB7 LINE L1 4796 5925 -253 402 123 11 53 chr15 82171441 82171628 -19208893 + (TA)n Simple_repeat Simple_repeat 1 179 0 * 472 90 51 40 chr15 82171615 82171792 -19208729 + (ATATG)n Simple_repeat Simple_repeat 2 180 0 390 40 145 0 chr15 82171817 82171969 -19208552 + (ATATG)n Simple_repeat Simple_repeat 2 175 0 390 40 145 0 chr15 82171997 82172149 -19208372 + (ATATG)n Simple_repeat Simple_repeat 2 175 0 216 109 55 36 chr15 82172156 82172211 -19208310 + (CATA)n Simple_repeat Simple_repeat 1 56 0 879 214 33 5 chr15 82172211 82172426 -19208095 + L1MB7 LINE L1 5918 6138 -46 874 142 21 7 chr15 82172426 82172567 -19207954 + FRAM SINE Alu 1 140 -36 234 0 0 0 chr15 82172575 82172601 -19207920 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1354 115 49 35 chr15 82175625 82175757 -19204764 + MER30 DNA MER1_type 2 140 -90 2377 91 0 0 chr15 82175757 82176054 -19204467 - AluSx SINE Alu -15 297 1 1354 115 49 35 chr15 82176054 82176147 -19204374 + MER30 DNA MER1_type 140 230 0 267 301 169 18 chr15 82176624 82176790 -19203731 - MIR SINE MIR -51 211 21 552 301 130 25 chr15 82176879 82177201 -19203320 - L2 LINE L2 -2 3311 2956 512 252 0 3 chr15 82178386 82178549 -19201972 - MER58A DNA MER1_type -20 204 1 2382 95 0 0 chr15 82178602 82178907 -19201614 + AluSq SINE Alu 1 305 -8 1170 254 84 0 chr15 82178907 82179312 -19201209 + L1M4 LINE L1 4169 4607 -1539 1496 171 40 0 chr15 82179321 82179573 -19200948 + AluJo SINE Alu 16 277 -35 * 2515 85 0 0 chr15 82179572 82179878 -19200643 - AluSx SINE Alu -6 306 1 2297 90 17 0 chr15 82180069 82180358 -19200163 + AluSg SINE Alu 1 294 -16 1848 56 0 9 chr15 82180549 82180780 -19199741 - L1PA7 LINE L1 0 6154 5926 568 187 65 8 chr15 82181660 82181783 -19198738 + FLAM_C SINE Alu 2 131 -2 198 103 0 0 chr15 82183255 82183284 -19197237 + (A)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr15 82183645 82183666 -19196855 + GC_rich Low_complexity Low_complexity 1 21 0 217 266 0 16 chr15 82184051 82184115 -19196406 + (CGG)n Simple_repeat Simple_repeat 1 63 0 181 219 0 0 chr15 82184757 82184789 -19195732 - MIR3 SINE MIR -19 189 158 632 218 47 33 chr15 82185024 82185235 -19195286 + L1ME3 LINE L1 5920 6133 -29 2356 97 0 28 chr15 82185514 82185834 -19194687 - AluSq SINE Alu -2 311 1 189 0 0 0 chr15 82185845 82185866 -19194655 + (A)n Simple_repeat Simple_repeat 1 21 0 199 307 123 26 chr15 82185866 82185980 -19194541 - L3 LINE CR1 -364 1213 1089 1368 122 50 5 chr15 82185982 82186203 -19194318 + AluJb SINE Alu 1 231 -81 811 98 202 81 chr15 82187100 82187273 -19193248 + MER46A DNA MER2_type 8 201 -35 740 240 7 7 chr15 82187564 82187718 -19192803 - AluJb SINE Alu -157 155 2 901 181 7 7 chr15 82188456 82188611 -19191910 - MER5A DNA MER1_type -33 156 2 2357 107 0 0 chr15 82188939 82189249 -19191272 - AluSx SINE Alu -2 310 1 220 241 19 0 chr15 82189565 82189619 -19190902 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 269 286 89 9 chr15 82191979 82192091 -19188430 + MIR SINE MIR 72 192 -70 258 340 127 0 chr15 82193055 82193205 -19187316 + MIR3 SINE MIR 31 199 -9 356 294 59 25 chr15 82193211 82193330 -19187191 + L2 LINE L2 3188 3310 -3 257 222 37 0 chr15 82193662 82193716 -19186805 + MIR SINE MIR 94 149 -59 264 360 0 0 chr15 82194376 82194548 -19185973 + GA-rich Low_complexity Low_complexity 1 172 0 197 217 4 0 chr15 82194761 82194806 -19185715 + MIR SINE MIR 100 146 -62 2004 135 6 31 chr15 82195341 82195659 -19184862 + AluSx SINE Alu 2 311 -1 294 301 169 0 chr15 82195711 82195847 -19184674 + MIR SINE MIR 98 256 -6 23 68 0 0 chr15 82196649 82196693 -19183828 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr15 82199232 82199255 -19181266 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr15 82199387 82199416 -19181105 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 82199971 82199993 -19180528 + AT_rich Low_complexity Low_complexity 1 22 0 281 223 42 22 chr15 82203516 82203606 -19176915 - MIR SINE MIR -55 153 59 1731 147 10 24 chr15 82203649 82203942 -19176579 - AluJo SINE Alu -23 289 1 824 226 6 23 chr15 82204310 82204487 -19176034 + AluJo SINE Alu 1 174 -138 685 188 59 16 chr15 82204548 82204734 -19175787 + L1MC4 LINE L1 7718 7911 -131 2719 64 19 8 chr15 82204734 82205093 -19175428 + L1PA5 LINE L1 5792 6154 0 198 0 0 0 chr15 82205159 82205181 -19175340 + (TA)n Simple_repeat Simple_repeat 1 22 0 2323 98 10 0 chr15 82205191 82205488 -19175033 + AluSp SINE Alu 1 300 -13 1065 148 0 0 chr15 82205488 82205637 -19174884 + AluSg/x SINE Alu 134 282 -30 418 155 175 0 chr15 82205646 82205749 -19174772 + L1MC4 LINE L1 7920 8040 -2 1297 219 21 17 chr15 82205850 82206138 -19174383 - AluJo SINE Alu -20 292 4 212 297 94 0 chr15 82206409 82206473 -19174048 - L2 LINE L2 -3 3269 3200 832 214 55 15 chr15 82207249 82207450 -19173071 - MER20 DNA MER1_type -4 215 7 300 226 0 0 chr15 82208262 82208315 -19172206 + MIR SINE MIR 46 98 -164 243 205 84 36 chr15 82208706 82208789 -19171732 + L3 LINE CR1 1234 1320 -257 2409 93 0 3 chr15 82209477 82209790 -19170731 + AluSx SINE Alu 1 312 0 419 251 312 0 chr15 82210987 82211202 -19169319 + L2 LINE L2 2999 3280 -33 2359 77 6 26 chr15 82211667 82211978 -19168543 - AluSx SINE Alu -7 305 1 1622 177 35 3 chr15 82211982 82212265 -19168256 - AluJo SINE Alu -20 292 1 2035 104 7 7 chr15 82212275 82212575 -19167946 - AluSg SINE Alu 0 300 1 270 81 0 0 chr15 82213532 82213569 -19166952 + (A)n Simple_repeat Simple_repeat 1 37 0 198 0 0 0 chr15 82214343 82214365 -19166156 + (T)n Simple_repeat Simple_repeat 1 22 0 195 155 107 131 chr15 82215189 82215273 -19165248 + MIR SINE MIR 38 119 -89 439 276 20 0 chr15 82215554 82215652 -19164869 + MER5A DNA MER1_type 10 109 -80 2158 72 54 0 chr15 82216188 82216465 -19164056 - AluSg SINE Alu -18 292 1 2431 76 7 0 chr15 82217360 82217664 -19162857 - AluY SINE Alu -5 306 1 492 149 42 107 chr15 82217706 82217747 -19162774 - Charlie5 DNA MER1_type -1 2584 2542 1970 155 3 7 chr15 82217747 82218044 -19162477 - AluJb SINE Alu -16 296 1 492 149 42 107 chr15 82218044 82218125 -19162396 - Charlie5 DNA MER1_type -43 2542 2473 2348 90 0 0 chr15 82218125 82218414 -19162107 + AluSc SINE Alu 1 289 -20 492 149 42 107 chr15 82218414 82218458 -19162063 - Charlie5 DNA MER1_type -112 2473 2428 1629 159 81 15 chr15 82221336 82221670 -19158851 - L1MC1 LINE L1 -17 6316 5961 225 256 23 58 chr15 82221673 82221759 -19158762 - MIR SINE MIR -96 166 84 268 268 222 13 chr15 82221827 82221980 -19158541 + MER5A DNA MER1_type 2 186 -3 468 143 83 0 chr15 82225271 82225355 -19155166 - FLAM_C SINE Alu -23 120 30 246 216 0 0 chr15 82226819 82226870 -19153651 - MIR SINE MIR -62 146 96 182 318 63 0 chr15 82227348 82227411 -19153110 + MIR SINE MIR 13 79 -183 377 318 54 50 chr15 82228632 82228874 -19151647 + MIR SINE MIR 2 244 -18 682 186 11 62 chr15 82229476 82229653 -19150868 - L1ME LINE L1 -551 5615 5448 2214 115 14 0 chr15 82229872 82230160 -19150361 + AluSx SINE Alu 1 292 -20 1613 166 51 27 chr15 82230467 82230763 -19149758 - AluJo SINE Alu -9 303 1 199 370 67 36 chr15 82231363 82231528 -19148993 - L2 LINE L2 -2910 404 235 559 331 156 19 chr15 82231604 82232015 -19148506 - L3 LINE CR1 -881 696 230 356 283 136 23 chr15 82232015 82232192 -19148329 - MIR SINE MIR -8 254 58 367 211 275 0 chr15 82232409 82232518 -19148003 + MER5A DNA MER1_type 51 189 0 1851 172 17 0 chr15 82232628 82232919 -19147602 + AluJo SINE Alu 1 296 -16 294 205 164 98 chr15 82233296 82233425 -19147096 + L1MC4 LINE L1 7695 7814 -228 1506 172 95 18 chr15 82233425 82233710 -19146811 - AluJo SINE Alu -3 309 3 294 205 164 98 chr15 82233710 82233897 -19146624 + L1MC4 LINE L1 7814 8032 -10 2500 72 0 25 chr15 82234344 82234663 -19145858 - AluY SINE Alu 0 311 1 301 260 52 0 chr15 82237095 82237172 -19143349 - L2 LINE L2 -2 3311 3231 2092 121 0 0 chr15 82237427 82237732 -19142789 + AluSg1 SINE Alu 1 305 0 365 277 80 0 chr15 82238170 82238282 -19142239 + MIR SINE MIR 20 140 -122 492 210 196 21 chr15 82243759 82243902 -19136619 + MER5A DNA MER1_type 14 181 -8 721 181 101 14 chr15 82243904 82244042 -19136479 + FRAM SINE Alu 1 150 -16 2275 114 0 16 chr15 82244506 82244822 -19135699 + AluSx SINE Alu 1 311 -1 230 253 23 11 chr15 82244824 82244890 -19135631 + L1ME2 LINE L1 4511 4580 -1566 2084 160 11 3 chr15 82244890 82245253 -19135268 - MER47A DNA MER2_type 0 366 1 230 253 23 11 chr15 82245253 82245273 -19135248 + L1ME2 LINE L1 4580 4598 -1548 2049 220 106 67 chr15 82245284 82246518 -19134003 + L1ME2 LINE L1 4873 6154 -10 2346 98 17 3 chr15 82246912 82247209 -19133312 + AluSx SINE Alu 1 301 -11 458 309 121 53 chr15 82247288 82247702 -19132819 + L1ME4a LINE L1 5676 6117 -4 2249 123 3 0 chr15 82248507 82248809 -19131712 + AluSg SINE Alu 1 303 -7 504 0 0 0 chr15 82248966 82249022 -19131499 + (CA)n Simple_repeat Simple_repeat 1 56 0 2027 92 14 38 chr15 82250151 82250443 -19130078 + AluSx SINE Alu 3 287 -25 1204 96 6 0 chr15 82250443 82250599 -19129922 - AluSq SINE Alu -156 157 1 414 0 0 0 chr15 82251693 82251739 -19128782 + (TG)n Simple_repeat Simple_repeat 2 47 0 264 291 165 10 chr15 82252040 82252143 -19128378 + MIR SINE MIR 11 129 -133 233 317 79 0 chr15 82252931 82253032 -19127489 + MIR SINE MIR 84 192 -70 333 68 0 0 chr15 82255775 82255819 -19124702 + (CA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chr15 82257310 82257332 -19123189 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr15 82257885 82257914 -19122607 + AT_rich Low_complexity Low_complexity 1 29 0 2076 144 29 29 chr15 82258750 82259125 -19121396 - THE1C LTR MaLR 0 375 1 2240 234 76 28 chr15 82259694 82260309 -19120212 + LTR5 LTR ERVK 1 645 -324 1472 273 58 20 chr15 82260356 82260999 -19119522 - HERVK LTR ERVK -1091 6152 5533 10794 188 57 6 chr15 82261233 82263828 -19116693 - HERVK LTR ERVK -1709 5534 2807 2316 83 7 0 chr15 82264937 82265238 -19115283 - AluY SINE Alu -8 303 1 395 274 34 0 chr15 82265240 82265357 -19115164 - Charlie8 DNA MER1_type -2252 165 45 430 276 40 13 chr15 82265609 82265761 -19114760 + MER103 DNA DNA 10 165 -1 204 301 39 35 chr15 82265965 82266168 -19114353 - L2 LINE L2 -653 2661 2458 348 296 87 64 chr15 82266514 82266825 -19113696 + L2 LINE L2 2928 3245 -27 195 280 65 21 chr15 82269532 82269625 -19110896 - MIR3 SINE MIR -31 177 81 236 244 24 71 chr15 82269833 82269960 -19110561 + CT-rich Low_complexity Low_complexity 6 126 0 204 241 0 19 chr15 82270379 82270433 -19110088 + CT-rich Low_complexity Low_complexity 2 54 0 183 156 0 0 chr15 82270445 82270477 -19110044 + CT-rich Low_complexity Low_complexity 3 34 0 221 240 0 0 chr15 82270972 82271022 -19109499 + (TG)n Simple_repeat Simple_repeat 1 50 0 505 236 129 7 chr15 82271573 82271713 -19108808 + MIR3 SINE MIR 3 159 -49 211 162 0 59 chr15 82271906 82271974 -19108547 + (TATATG)n Simple_repeat Simple_repeat 6 69 0 408 88 0 0 chr15 82272921 82272978 -19107543 + (CA)n Simple_repeat Simple_repeat 2 58 0 271 289 21 21 chr15 82273095 82273192 -19107329 - MIR SINE MIR -71 137 41 510 236 110 33 chr15 82273282 82273464 -19107057 + MIR SINE MIR 36 231 -31 329 231 130 28 chr15 82273716 82273824 -19106697 - L1MC4 LINE L1 -1342 6700 6582 2380 102 0 0 chr15 82275035 82275340 -19105181 + AluSq SINE Alu 1 305 -8 204 255 0 0 chr15 82275759 82275806 -19104715 + A-rich Low_complexity Low_complexity 1 47 0 536 220 30 23 chr15 82277526 82277658 -19102863 + MER94 DNA DNA 2 134 0 210 266 281 8 chr15 82278883 82279011 -19101510 - L2 LINE L2 -206 3066 2904 211 350 40 0 chr15 82279185 82279285 -19101236 + MIR SINE MIR 45 148 -60 194 295 160 39 chr15 82279474 82279630 -19100891 + MIR SINE MIR 83 257 -5 297 119 0 0 chr15 82279676 82279718 -19100803 + AluSq SINE Alu 1 42 -259 1531 109 0 5 chr15 82279718 82279920 -19100601 + AluSq SINE Alu 81 281 -32 370 78 16 16 chr15 82280760 82280824 -19099697 + (CCTG)n Simple_repeat Simple_repeat 3 66 0 228 67 0 0 chr15 82282222 82282252 -19098269 + (GA)n Simple_repeat Simple_repeat 1 30 0 2340 95 0 0 chr15 82283750 82284046 -19096475 - AluY SINE Alu -15 296 1 1088 183 50 15 chr15 82284108 82284310 -19096211 - AluJo SINE Alu -18 294 86 28 61 0 0 chr15 82284773 82284822 -19095699 + AT_rich Low_complexity Low_complexity 1 49 0 26 64 0 0 chr15 82286048 82286095 -19094426 + AT_rich Low_complexity Low_complexity 1 47 0 2252 80 0 0 chr15 82286100 82286375 -19094146 + AluSc SINE Alu 1 275 -34 346 244 114 34 chr15 82286516 82286692 -19093829 + HAL1 LINE L1 881 1070 -1437 443 270 77 104 chr15 82286710 82287212 -19093309 + MLT1H LTR MaLR 19 549 0 22 35 0 0 chr15 82287279 82287308 -19093213 + AT_rich Low_complexity Low_complexity 1 29 0 988 238 96 30 chr15 82287328 82287723 -19092798 + HAL1 LINE L1 1210 1630 -877 840 215 14 51 chr15 82287752 82287966 -19092555 - MIR SINE MIR -29 233 28 198 174 0 0 chr15 82288125 82288171 -19092350 + A-rich Low_complexity Low_complexity 1 46 0 2235 106 7 0 chr15 82288313 82288616 -19091905 - AluY SINE Alu -6 305 1 590 165 19 0 chr15 82289021 82289124 -19091397 + Charlie1 DNA MER1_type 1426 1530 -1231 1104 120 0 0 chr15 82289170 82289320 -19091201 + AluSq/x SINE Alu 1 150 -163 1247 178 19 62 chr15 82289430 82289689 -19090832 + AluJo SINE Alu 53 300 -12 23 54 0 0 chr15 82289796 82289833 -19090688 + AT_rich Low_complexity Low_complexity 1 37 0 1029 162 24 0 chr15 82289842 82290009 -19090512 + AluJo SINE Alu 1 171 -141 665 211 96 64 chr15 82290027 82290170 -19090351 - Charlie2a DNA MER1_type -1152 1710 1573 1760 162 0 7 chr15 82290170 82290460 -19090061 - AluJb SINE Alu -24 288 1 665 211 96 64 chr15 82290460 82290596 -19089925 - Charlie2a DNA MER1_type -1289 1573 1422 293 167 0 0 chr15 82290736 82290778 -19089743 - 5S rRNA rRNA -79 42 1 4880 121 29 45 chr15 82290815 82291553 -19088968 - L1PA13 LINE L1 -14 6149 5425 2115 125 0 16 chr15 82291553 82291865 -19088656 - AluSx SINE Alu -5 307 1 4880 121 29 45 chr15 82291865 82291962 -19088559 - L1PA13 LINE L1 -738 5425 5328 654 207 92 18 chr15 82291977 82292141 -19088380 - L1MB8 LINE L1 -176 6002 5827 1518 158 8 4 chr15 82292141 82292382 -19088139 - AluJb SINE Alu -12 300 59 847 159 8 0 chr15 82292615 82292747 -19087774 + AluSq/x SINE Alu 1 133 -180 2249 103 3 22 chr15 82292751 82293062 -19087459 + AluSg SINE Alu 1 305 -5 827 201 40 0 chr15 82293842 82293991 -19086530 - FAM SINE Alu -18 167 13 464 230 122 27 chr15 82294411 82294559 -19085962 - MER103 DNA DNA -1 165 4 322 91 164 0 chr15 82294748 82294803 -19085718 + MER41A LTR ERV1 401 464 -90 2021 116 29 4 chr15 82294803 82295105 -19085416 - AluSg SINE Alu 0 309 1 241 206 63 48 chr15 82295120 82295183 -19085338 + MER5A DNA MER1_type 61 124 -65 278 191 0 0 chr15 82295328 82295375 -19085146 + LTR67 LTR ERVL 49 95 -462 6915 101 29 23 chr15 82297242 82297599 -19082922 + L1MA3 LINE L1 5081 5435 -870 2225 104 3 10 chr15 82297599 82297907 -19082614 + AluSx SINE Alu 1 306 -6 6915 101 29 23 chr15 82297907 82298055 -19082466 + L1MA3 LINE L1 5435 5581 -724 2157 101 7 14 chr15 82298055 82298352 -19082169 + AluSq SINE Alu 1 295 -18 6915 101 29 23 chr15 82298352 82298363 -19082158 + L1MA3 LINE L1 5581 5590 -715 2381 98 0 0 chr15 82298363 82298669 -19081852 + AluSx SINE Alu 1 306 -6 6915 101 29 23 chr15 82298669 82299363 -19081158 + L1MA3 LINE L1 5590 6305 0 1606 230 77 18 chr15 82299377 82299768 -19080753 + MLT1E LTR MaLR 180 593 0 474 135 11 22 chr15 82299810 82299899 -19080622 - AluSg/x SINE Alu -7 302 215 1267 268 75 25 chr15 82299999 82300589 -19079932 + L1M4 LINE L1 2396 3014 -3132 578 270 55 18 chr15 82300601 82300764 -19079757 + AluJo SINE Alu 120 288 -24 2303 107 3 0 chr15 82300781 82301091 -19079430 + AluSx SINE Alu 1 311 -1 5597 215 87 40 chr15 82301107 82302289 -19078232 + L1M4 LINE L1 1 1126 -5520 622 203 39 0 chr15 82302289 82302417 -19078104 + AluJo/FLAM SINE Alu 1 133 -169 2350 92 3 13 chr15 82302419 82302733 -19077788 + AluY SINE Alu 1 311 0 5597 215 87 40 chr15 82302733 82303599 -19076922 + L1M4 LINE L1 1126 2157 -4489 1013 151 154 67 chr15 82303608 82303906 -19076615 + L1MA9 LINE L1 5989 6312 0 1208 296 21 105 chr15 82303975 82304309 -19076212 + AluYb8 SINE Alu 1 306 -12 13446 118 42 28 chr15 82304311 82306484 -19074037 - Tigger1 DNA MER2_type -213 2205 1 1342 207 107 10 chr15 82306484 82306793 -19073728 - L1M4 LINE L1 -395 5783 5445 1392 98 10 5 chr15 82306937 82307130 -19073391 + AluSg/x SINE Alu 110 303 -9 1329 193 0 8 chr15 82307453 82307692 -19072829 + AluJb SINE Alu 1 237 -75 3393 88 21 13 chr15 82307710 82308186 -19072335 - LTR15 LTR ERV1 -13 480 1 291 158 0 18 chr15 82308187 82308244 -19072277 + AluJb SINE Alu 239 294 -8 2057 108 16 59 chr15 82308605 82308912 -19071609 + AluSx SINE Alu 1 294 -18 2267 125 0 0 chr15 82308914 82309219 -19071302 + AluSx SINE Alu 1 305 -7 317 47 0 0 chr15 82309325 82309368 -19071153 + L1MA2 LINE L1 6262 6304 0 180 342 13 0 chr15 82309661 82309740 -19070781 - MIR SINE MIR -36 226 147 287 271 117 25 chr15 82310217 82310586 -19069935 + L1MEd LINE L1 940 1250 -4869 266 264 82 66 chr15 82310932 82311114 -19069407 + L1M4 LINE L1 2321 2505 -4320 410 315 93 28 chr15 82311609 82311948 -19068573 + L2 LINE L2 2034 2408 -906 1335 208 60 33 chr15 82311948 82312280 -19068241 + MER58B DNA MER1_type 1 341 0 410 315 93 28 chr15 82312280 82312368 -19068153 + L2 LINE L2 2408 2489 -825 279 0 0 0 chr15 82315934 82315965 -19064556 + (CA)n Simple_repeat Simple_repeat 1 31 0 306 303 83 14 chr15 82318284 82318429 -19062092 - MIR SINE MIR -2 260 106 851 166 43 53 chr15 82319670 82319857 -19060664 + MLT1E LTR MaLR 1 185 -408 1254 112 46 0 chr15 82319857 82320054 -19060467 + L1 LINE L1 4126 4331 -1815 2304 106 0 0 chr15 82320054 82320347 -19060174 + AluSc SINE Alu 1 293 -16 605 109 0 43 chr15 82320360 82320452 -19060069 + AluSx SINE Alu 3 90 -222 1543 105 5 0 chr15 82320552 82320761 -19059760 + AluSx SINE Alu 89 298 -14 727 263 120 32 chr15 82321133 82321441 -19059080 - MER102b DNA MER1_type -3 338 4 2250 91 17 0 chr15 82322279 82322566 -19057955 - AluSg SINE Alu -18 292 1 1416 187 40 18 chr15 82323360 82323638 -19056883 - AluJo SINE Alu -22 290 7 210 37 0 0 chr15 82324655 82324682 -19055839 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 268 383 25 25 chr15 82324768 82324930 -19055591 - MIR3 SINE MIR -41 167 6 270 306 58 8 chr15 82325378 82325499 -19055022 - L2 LINE L2 -291 2981 2855 497 258 8 0 chr15 82325501 82325629 -19054892 + L1ME3 LINE L1 5611 5739 -423 618 215 0 0 chr15 82325644 82325765 -19054756 + FLAM_A SINE Alu 18 138 -4 1684 230 81 22 chr15 82325783 82326044 -19054477 - MER68 LTR ERV1 -12 550 249 198 0 0 0 chr15 82326044 82326066 -19054455 + (GA)n Simple_repeat Simple_repeat 2 23 0 1684 230 81 22 chr15 82326066 82326261 -19054260 - MER68 LTR ERV1 -313 249 67 815 251 77 40 chr15 82326303 82326653 -19053868 + L1ME3 LINE L1 5754 6116 -46 249 226 0 19 chr15 82326743 82326796 -19053725 - L2 LINE L2 -498 2816 2765 5318 166 117 39 chr15 82326799 82328148 -19052373 + Charlie1a DNA MER1_type 1 1455 0 444 213 28 0 chr15 82329344 82329452 -19051069 - L1ME3A LINE L1 -12 6158 6048 215 269 15 30 chr15 82329928 82329995 -19050526 + MIR3 SINE MIR 111 176 -32 1883 215 108 18 chr15 82330046 82330535 -19049986 + MLT1F LTR MaLR 10 542 0 760 246 60 20 chr15 82330638 82330837 -19049684 - MER63A DNA MER1_type -1 209 3 890 279 45 29 chr15 82331143 82331520 -19049001 - L1ME3A LINE L1 -231 5939 5557 1240 211 95 16 chr15 82331527 82331897 -19048624 + L1ME3 LINE L1 5690 6088 -74 2421 60 0 0 chr15 82331912 82332237 -19048284 + AluY SINE Alu 1 325 0 621 261 51 35 chr15 82332302 82332668 -19047853 - L1ME3A LINE L1 -683 5487 5177 2313 73 7 0 chr15 82332668 82332954 -19047567 + AluSg SINE Alu 9 296 -14 621 261 51 35 chr15 82332954 82333176 -19047345 - L1ME3A LINE L1 -993 5177 4960 2476 72 0 13 chr15 82333187 82333492 -19047029 - AluY SINE Alu -10 301 1 192 250 0 0 chr15 82333923 82333963 -19046558 + MIR SINE MIR 67 106 -102 592 245 25 18 chr15 82334207 82334406 -19046115 + MIR SINE MIR 15 262 0 458 234 160 29 chr15 82334611 82334786 -19045735 + Charlie8 DNA MER1_type 1 198 -2219 224 245 147 20 chr15 82336069 82336171 -19044350 - MIR SINE MIR -61 147 33 24 67 0 0 chr15 82336255 82336300 -19044221 + GC_rich Low_complexity Low_complexity 1 45 0 28 48 0 0 chr15 82336928 82336970 -19043551 + GC_rich Low_complexity Low_complexity 1 42 0 2182 98 0 10 chr15 82338446 82338762 -19041759 - AluSg SINE Alu 0 310 1 584 167 78 115 chr15 82338991 82339078 -19041443 + Charlie2 DNA MER1_type 2400 2489 -373 2980 16 0 0 chr15 82339078 82339396 -19041125 + AluYb8 SINE Alu 1 318 0 584 167 78 115 chr15 82339396 82339486 -19041035 + Charlie2 DNA MER1_type 2489 2566 -296 2404 97 0 3 chr15 82339486 82339796 -19040725 + AluSc SINE Alu 1 309 0 584 167 78 115 chr15 82339796 82339886 -19040635 + Charlie2 DNA MER1_type 2566 2658 -204 1735 166 42 0 chr15 82339955 82340286 -19040235 - L1MB4 LINE L1 -2 6178 5834 1715 174 44 3 chr15 82340292 82340585 -19039936 - AluJb SINE Alu -6 306 2 694 182 0 18 chr15 82340608 82340718 -19039803 - FLAM_A SINE Alu -29 113 6 1840 168 44 31 chr15 82340723 82341110 -19039411 - L1MB4 LINE L1 -361 5822 5431 245 306 0 0 chr15 82341277 82341339 -19039182 + MLT1K LTR MaLR 177 238 -350 227 295 84 21 chr15 82341309 82341404 -19039117 + MLT1K LTR MaLR 140 240 -348 * 2109 91 4 4 chr15 82342181 82342456 -19038065 - AluY SINE Alu -5 306 32 373 254 35 21 chr15 82342964 82343106 -19037415 + L1ME4a LINE L1 5542 5685 -436 347 206 65 0 chr15 82343180 82343272 -19037249 - Charlie4 DNA MER1_type 0 1961 1864 693 237 71 36 chr15 82343276 82343424 -19037097 - Charlie4 DNA MER1_type -244 264 102 2379 98 0 0 chr15 82343424 82343730 -19036791 + AluY SINE Alu 1 306 -5 693 237 71 36 chr15 82343730 82343834 -19036687 - Charlie4 DNA MER1_type -406 102 3 2414 80 7 7 chr15 82343842 82344143 -19036378 + AluSx SINE Alu 1 301 -11 348 191 153 15 chr15 82344249 82344380 -19036141 + L1ME4a LINE L1 5945 6093 -28 268 267 57 57 chr15 82345376 82345552 -19034969 - L2 LINE L2 -39 3274 3099 21 36 0 0 chr15 82345941 82345969 -19034552 + AT_rich Low_complexity Low_complexity 1 28 0 246 324 70 0 chr15 82346726 82346868 -19033653 + L1ME LINE L1 5589 5740 -381 21 36 0 0 chr15 82347177 82347205 -19033316 + AT_rich Low_complexity Low_complexity 1 28 0 1798 148 3 77 chr15 82347358 82347695 -19032826 - AluJb SINE Alu 0 312 1 252 290 111 43 chr15 82347829 82348137 -19032384 - L1ME4a LINE L1 -153 5968 5636 456 275 178 8 chr15 82348381 82348617 -19031904 + L2 LINE L2 2379 2654 -660 293 311 66 80 chr15 82348643 82348794 -19031727 + L2 LINE L2 2895 3043 -270 1382 150 0 0 chr15 82348911 82349104 -19031417 + AluSx SINE Alu 1 193 -119 1341 167 0 0 chr15 82349204 82349414 -19031107 + AluJo SINE Alu 95 304 -8 840 112 16 0 chr15 82349414 82349539 -19030982 - MLT1B LTR MaLR -31 359 233 360 127 14 56 chr15 82349544 82349615 -19030906 + MER21B LTR ERV1 1 68 -795 2785 223 117 25 chr15 82349647 82349795 -19030726 + MER21B LTR ERV1 19 152 -711 2177 128 3 10 chr15 82349795 82350108 -19030413 - AluSx SINE Alu -1 311 1 2785 223 117 25 chr15 82350108 82350731 -19029790 + MER21B LTR ERV1 152 861 -2 1225 103 132 0 chr15 82350743 82350947 -19029574 - MLT1B LTR MaLR -159 231 1 2359 94 0 10 chr15 82351005 82351303 -19029218 + AluSx SINE Alu 1 295 -17 314 306 153 9 chr15 82351383 82351494 -19029027 - MER91A DNA MER1_type -57 139 13 2516 72 0 10 chr15 82351759 82352066 -19028455 + AluY SINE Alu 1 304 -7 216 279 29 7 chr15 82352898 82353038 -19027483 + (CA)n Simple_repeat Simple_repeat 1 143 0 220 211 18 0 chr15 82353155 82353212 -19027309 + (CA)n Simple_repeat Simple_repeat 1 58 0 2594 86 0 0 chr15 82355114 82355427 -19025094 - AluSp SINE Alu 0 313 1 2088 142 0 0 chr15 82355582 82355889 -19024632 - AluSx SINE Alu 0 307 1 408 253 71 28 chr15 82356325 82356507 -19024014 + L1MC4 LINE L1 7840 8029 -13 667 283 178 38 chr15 82356610 82357105 -19023416 + L2 LINE L2 1901 2464 -850 2652 98 128 2 chr15 82357105 82357503 -19023018 + LTR7 LTR ERV1 1 448 -2 14003 119 8 40 chr15 82357505 82360400 -19020121 + HERVH LTR ERV1 1 2995 -4718 2103 164 8 3 chr15 82360379 82360752 -19019769 + HERVH LTR ERV1 3140 3514 -4199 * 367 317 75 19 chr15 82361566 82361727 -19018794 + L2 LINE L2 3103 3272 0 209 163 41 0 chr15 82362145 82362194 -19018327 + CT-rich Low_complexity Low_complexity 1 51 0 1209 204 18 5 chr15 82362578 82362799 -19017722 - MER58A DNA MER1_type 0 224 1 572 273 136 67 chr15 82365405 82365899 -19014622 + L2 LINE L2 2715 3225 -47 183 261 113 17 chr15 82366102 82366137 -19014384 + MIR SINE MIR 79 109 -153 2224 113 7 10 chr15 82366137 82366439 -19014082 - AluSq SINE Alu -12 301 1 183 261 113 17 chr15 82366439 82366518 -19014003 + MIR SINE MIR 109 204 -58 192 163 0 0 chr15 82367439 82367482 -19013039 + G-rich Low_complexity Low_complexity 3 45 0 2497 75 3 3 chr15 82369066 82369372 -19011149 - AluSx SINE Alu -6 306 1 682 135 27 0 chr15 82369497 82369608 -19010913 - Tigger1 DNA MER2_type 0 2418 2305 860 162 0 34 chr15 82369608 82369756 -19010765 + FRAM SINE Alu 20 162 -14 421 73 0 44 chr15 82369756 82369824 -19010697 - Tigger1 DNA MER2_type -109 2309 2245 996 113 0 8 chr15 82369824 82369957 -19010564 + FLAM_C SINE Alu 1 132 -11 8561 101 20 24 chr15 82369957 82370068 -19010453 - Tigger1 DNA MER2_type -459 1959 1849 2575 77 0 0 chr15 82370068 82370378 -19010143 - AluY SINE Alu 0 311 2 8561 101 20 24 chr15 82370378 82371618 -19008903 - Tigger1 DNA MER2_type -569 1849 613 1172 148 128 10 chr15 82371618 82371814 -19008707 - AluJo SINE Alu -93 219 1 3720 114 63 2 chr15 82371814 82372400 -19008121 - Tigger1 DNA MER2_type -1796 622 1 306 276 120 57 chr15 82372403 82372595 -19007926 + L3 LINE CR1 113 316 -1261 209 283 208 0 chr15 82372679 82372799 -19007722 + L3 LINE CR1 331 475 -1102 189 0 0 0 chr15 82372916 82372937 -19007584 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 513 284 309 12 chr15 82372945 82373269 -19007252 + L3 LINE CR1 466 885 -692 607 150 10 0 chr15 82373649 82373749 -19006772 - FAM SINE Alu -11 174 74 2227 105 3 3 chr15 82373751 82374046 -19006475 - AluSg SINE Alu -15 295 1 206 357 0 48 chr15 82374050 82374176 -19006345 + L3 LINE CR1 1326 1445 -132 723 219 104 16 chr15 82374207 82374399 -19006122 + MER58A DNA MER1_type 1 209 -15 213 211 115 0 chr15 82374589 82374641 -19005880 + L2 LINE L2 3256 3313 0 1625 147 30 15 chr15 82374851 82375129 -19005392 + AluJb SINE Alu 13 303 0 190 0 0 0 chr15 82375129 82375150 -19005371 + (TAAA)n Simple_repeat Simple_repeat 4 180 0 947 173 23 6 chr15 82376662 82376835 -19003686 + MLT1C LTR MaLR 1 176 -291 945 95 8 0 chr15 82376846 82376972 -19003549 + AluJb SINE Alu 1 127 -185 1113 190 50 12 chr15 82377021 82377263 -19003258 + MLT1C LTR MaLR 192 442 -25 5358 83 2 69 chr15 82377279 82377669 -19002852 - L1HS LINE L1 -1 6154 5846 2026 108 0 23 chr15 82377669 82377974 -19002547 - AluY SINE Alu -2 309 12 5358 83 2 69 chr15 82377974 82378406 -19002115 - L1HS LINE L1 -309 5846 5387 27 0 0 0 chr15 82378630 82378657 -19001864 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chr15 82380211 82380242 -19000279 + GC_rich Low_complexity Low_complexity 1 31 0 1913 105 0 0 chr15 82380281 82380528 -18999993 - AluSq SINE Alu -18 295 49 245 310 117 16 chr15 82380711 82380868 -18999653 - MIR SINE MIR -63 145 17 438 169 13 0 chr15 82382344 82382421 -18998100 - MER116 DNA Mariner 0 80 3 2123 120 17 3 chr15 82382789 82383090 -18997431 + AluSx SINE Alu 1 305 -7 2193 110 0 0 chr15 82384270 82384561 -18995960 + AluSq SINE Alu 1 291 -22 25 0 0 0 chr15 82384676 82384701 -18995820 + AT_rich Low_complexity Low_complexity 1 25 0 1699 152 3 53 chr15 82385114 82385417 -18995104 + AluJo SINE Alu 1 288 -24 1733 142 20 61 chr15 82385466 82385661 -18994860 + MER46B DNA MER2_type 32 84 -2647 2409 87 0 3 chr15 82385661 82385970 -18994551 + AluY SINE Alu 1 308 -3 1733 142 20 61 chr15 82385970 82386118 -18994403 + MER46B DNA MER2_type 84 236 0 351 261 92 39 chr15 82386340 82386470 -18994051 - MIR SINE MIR -2 260 124 1517 153 0 4 chr15 82387313 82387549 -18992972 - AluJb SINE Alu -6 306 72 731 154 0 9 chr15 82387714 82387824 -18992697 + FLAM_A SINE Alu 8 116 -26 301 305 51 0 chr15 82388340 82388458 -18992063 - L2 LINE L2 -815 2499 2376 393 206 301 7 chr15 82388668 82388804 -18991717 - MIR SINE MIR -21 241 66 382 117 104 0 chr15 82388811 82388888 -18991633 - L1MB7 LINE L1 0 6184 6100 9094 118 49 34 chr15 82388889 82390378 -18990143 - Tigger2 DNA MER2_type 0 2718 1208 185 229 0 0 chr15 82390423 82390458 -18990063 + MIR SINE MIR 218 252 -10 847 165 281 0 chr15 82391015 82391257 -18989264 - MER33 DNA MER1_type -14 310 1 2321 107 0 0 chr15 82391480 82391789 -18988732 - AluSc SINE Alu 0 309 1 2357 105 0 3 chr15 82391793 82392106 -18988415 - AluSx SINE Alu 0 312 1 1410 186 17 13 chr15 82392210 82392447 -18988074 - MER8 DNA MER2_type 0 239 2 1402 160 63 35 chr15 82392822 82393109 -18987412 + AluJb SINE Alu 1 295 -17 186 296 37 37 chr15 82393511 82393592 -18986929 + MIR SINE MIR 120 200 -62 242 216 250 44 chr15 82393925 82394221 -18986300 + L1ME4a LINE L1 5649 6005 -116 2150 106 10 3 chr15 82394255 82394547 -18985974 - AluSx SINE Alu -18 294 1 1795 133 37 11 chr15 82395248 82395519 -18985002 + AluSx SINE Alu 1 278 -34 402 212 30 30 chr15 82396142 82396241 -18984280 - L1ME3A LINE L1 -13 6157 6059 2323 81 14 0 chr15 82396306 82396603 -18983918 - AluSp SINE Alu -12 301 1 804 136 0 0 chr15 82396607 82396725 -18983796 - FLAM_C SINE Alu -9 134 17 2626 226 96 33 chr15 82396947 82397129 -18983392 - L1ME3A LINE L1 -2 6168 5999 1686 172 14 24 chr15 82397129 82397425 -18983096 - AluJo SINE Alu -17 295 3 2626 226 96 33 chr15 82397425 82397503 -18983018 - L1ME3A LINE L1 -171 5999 5927 2040 115 0 58 chr15 82397503 82397816 -18982705 - AluSg SINE Alu -15 295 1 2626 226 96 33 chr15 82397816 82399273 -18981248 - L1ME3A LINE L1 -243 5927 4342 1010 192 16 0 chr15 82399657 82399839 -18980682 + L1ME1 LINE L1 5452 5636 -530 355 187 80 9 chr15 82399910 82399931 -18980590 - L1MC2 LINE L1 -3 7747 7729 2713 3 0 0 chr15 82399931 82400218 -18980303 + AluYa5 SINE Alu 22 308 -3 355 187 80 9 chr15 82400218 82400538 -18979983 - L1MC2 LINE L1 -21 7729 6165 1397 220 63 29 chr15 82400539 82400917 -18979604 + L1ME1 LINE L1 5645 6035 -131 673 184 41 20 chr15 82400949 82401096 -18979425 + L1MA10 LINE L1 6177 6326 -8 1751 77 0 14 chr15 82401183 82401405 -18979116 + AluSq SINE Alu 84 302 -11 440 303 156 40 chr15 82401633 82402228 -18978293 - L1ME3A LINE L1 -1 6169 5506 473 322 98 0 chr15 82402778 82402992 -18977529 + MIR SINE MIR 21 255 -7 288 0 0 0 chr15 82403062 82403094 -18977427 + (CA)n Simple_repeat Simple_repeat 2 33 0 830 189 46 13 chr15 82403620 82403773 -18976748 + AluJo SINE Alu 119 276 -36 385 247 103 22 chr15 82403789 82404065 -18976456 + GSAT Satellite centromeric 1 298 -45 225 172 0 17 chr15 82404081 82404139 -18976382 + GSATX Satellite centromeric 56 112 -106 1542 161 100 0 chr15 82404284 82404563 -18975958 + AluJb SINE Alu 2 308 -4 973 262 60 87 chr15 82404585 82405061 -18975460 - L1ME3A LINE L1 -2196 3950 3463 2081 115 4 0 chr15 82405061 82405388 -18975133 - AluSg SINE Alu 0 328 1 973 262 60 87 chr15 82405388 82405422 -18975099 - L1ME3A LINE L1 -2683 3463 3430 2285 114 3 0 chr15 82405422 82405728 -18974793 - AluSx SINE Alu -5 307 1 973 262 60 87 chr15 82405728 82405860 -18974661 - L1ME3A LINE L1 -2716 3430 3323 195 114 0 0 chr15 82405862 82405897 -18974624 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 814 64 0 0 chr15 82405897 82405991 -18974530 - AluY SINE Alu -194 117 24 313 260 90 62 chr15 82406028 82406205 -18974316 - L1ME3A LINE L1 -2912 3234 3053 1252 160 0 36 chr15 82406249 82406468 -18974053 - AluJo SINE Alu -101 211 1 4436 217 155 41 chr15 82406471 82406955 -18973566 - L1M4 LINE L1 -1586 4796 4369 2407 89 0 3 chr15 82406955 82407268 -18973253 - AluSx SINE Alu 0 312 1 4436 217 155 41 chr15 82407268 82407865 -18972656 - L1M4 LINE L1 -2013 4369 3842 2203 123 3 0 chr15 82407865 82408165 -18972356 - AluSp SINE Alu -12 301 1 4436 217 155 41 chr15 82408165 82408430 -18972091 - L1M4 LINE L1 -2540 3842 3609 1961 133 3 7 chr15 82408430 82408715 -18971806 - AluJb SINE Alu -17 295 12 4436 217 155 41 chr15 82408715 82409158 -18971363 - L1M4 LINE L1 -2773 3609 2800 3010 219 71 45 chr15 82409190 82410032 -18970489 + L1M4 LINE L1 1 864 -5678 1457 203 38 52 chr15 82410018 82410332 -18970189 - L1M4 LINE L1 -3572 2810 2511 * 2296 105 3 3 chr15 82410332 82410638 -18969883 - AluSx SINE Alu -6 306 1 1457 203 38 52 chr15 82410638 82410924 -18969597 - L1M4 LINE L1 -3871 2511 2223 825 187 0 15 chr15 82410959 82411093 -18969428 - FLAM_C SINE Alu -1 132 1 2843 3 0 0 chr15 82411107 82411408 -18969113 - AluYa5 SINE Alu -10 301 1 808 209 55 15 chr15 82462071 82462272 -18918249 - MER20 DNA MER1_type -4 215 7 195 42 0 0 chr15 82464341 82464365 -18916156 + (CAGGG)n Simple_repeat Simple_repeat 5 28 0 1882 79 30 11 chr15 82464874 82465140 -18915381 + L1PA5 LINE L1 5884 6154 0 234 0 0 0 chr15 82465206 82465232 -18915289 + (TA)n Simple_repeat Simple_repeat 1 26 0 2217 98 10 0 chr15 82465248 82465545 -18914976 + AluSp SINE Alu 1 300 -13 1021 148 0 0 chr15 82465545 82465694 -18914827 + AluSg/x SINE Alu 132 280 -30 385 155 175 0 chr15 82465703 82465806 -18914715 + L1MC4 LINE L1 7920 8040 -2 1268 222 21 17 chr15 82465907 82466195 -18914326 - AluJb SINE Alu -20 292 4 191 297 94 0 chr15 82466465 82466529 -18913992 - L2 LINE L2 -3 3269 3200 261 306 74 0 chr15 82468937 82469045 -18911476 - L2 LINE L2 -1 3271 3156 258 217 152 22 chr15 82469987 82470079 -18910442 - MIR SINE MIR -55 153 50 1596 146 14 24 chr15 82470118 82470405 -18910116 - AluJo SINE Alu -23 289 6 807 226 6 23 chr15 82470776 82470953 -18909568 + AluJo SINE Alu 1 174 -138 600 199 61 15 chr15 82470996 82471192 -18909329 + L1MC4 LINE L1 7710 7914 -128 2375 86 0 0 chr15 82471572 82471875 -18908646 + AluSx SINE Alu 1 303 -9 1423 172 38 11 chr15 82471876 82472143 -18908378 - AluJo SINE Alu -38 274 1 1110 249 84 0 chr15 82472148 82472553 -18907968 - L1M4 LINE L1 -1539 4607 4169 2274 95 0 0 chr15 82472553 82472858 -18907663 - AluSq SINE Alu -8 305 1 618 265 238 0 chr15 82472911 82473092 -18907429 + MER58A DNA MER1_type 1 224 0 806 190 0 29 chr15 82473677 82473814 -18906707 - FLAM_C SINE Alu 0 133 1 245 399 13 29 chr15 82474061 82474299 -18906222 - L2 LINE L2 -235 3037 2804 211 266 83 46 chr15 82474325 82474434 -18906087 - MIR SINE MIR -63 145 33 322 225 14 0 chr15 82476375 82476446 -18904075 - MER63 DNA MER1_type -9 1052 981 * 397 273 27 0 chr15 82476441 82476551 -18903970 - MER63 DNA MER1_type -95 741 3 302 50 25 0 chr15 82476588 82476628 -18903893 - MLT2A2 LTR ERVL 0 453 413 23 0 0 0 chr15 82477411 82477434 -18903087 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr15 82477566 82477595 -18902926 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 82478150 82478172 -18902349 + AT_rich Low_complexity Low_complexity 1 22 0 265 235 111 0 chr15 82481299 82481380 -18899141 - MER5A DNA MER1_type -53 136 47 255 342 60 20 chr15 82481677 82481826 -18898695 - L2 LINE L2 -208 3064 2910 1177 146 48 10 chr15 82482231 82482437 -18898084 + AluJb SINE Alu 83 296 -16 299 226 0 0 chr15 82483686 82483739 -18896782 + MIR SINE MIR 46 98 -164 240 205 84 36 chr15 82484130 82484213 -18896308 + L3 LINE CR1 1234 1320 -257 182 88 0 29 chr15 82484707 82484741 -18895780 + (CCCCG)n Simple_repeat Simple_repeat 4 36 0 2224 92 0 6 chr15 82484901 82485215 -18895306 + AluSx SINE Alu 1 312 0 270 286 89 9 chr15 82487070 82487182 -18893339 + MIR SINE MIR 72 192 -70 244 336 133 0 chr15 82488145 82488288 -18892233 + MIR3 SINE MIR 31 192 -16 331 294 67 34 chr15 82488301 82488420 -18892101 + L2 LINE L2 3188 3310 -3 253 222 37 0 chr15 82488750 82488804 -18891717 + MIR SINE MIR 94 149 -59 376 326 50 45 chr15 82490731 82490973 -18889548 + MIR SINE MIR 2 244 -18 726 186 11 62 chr15 82491574 82491751 -18888770 - L1ME LINE L1 -551 5615 5448 1937 114 0 0 chr15 82491970 82492233 -18888288 + AluSx SINE Alu 1 263 -49 1037 140 11 6 chr15 82492341 82492520 -18888001 + AluSg/x SINE Alu 132 311 -1 295 301 169 0 chr15 82492572 82492708 -18887813 + MIR SINE MIR 98 256 -6 23 78 0 0 chr15 82493538 82493589 -18886932 + AT_rich Low_complexity Low_complexity 1 51 0 284 112 18 61 chr15 82495423 82495489 -18885032 - MLT2A1 LTR ERVL -2 451 401 2821 102 17 24 chr15 82495524 82495936 -18884585 - MLT2A1 LTR ERVL -35 409 1 372 232 0 0 chr15 82497093 82497192 -18883329 + (TG)n Simple_repeat Simple_repeat 2 100 0 2008 121 0 0 chr15 82497200 82497490 -18883031 - AluSg SINE Alu -20 290 1 235 254 117 54 chr15 82497503 82497708 -18882813 + L1ME4a LINE L1 5903 6120 -1 1435 247 135 21 chr15 82498530 82499057 -18881464 + MLT1E LTR MaLR 3 589 -4 1791 92 31 0 chr15 82499204 82499464 -18881057 + AluSg SINE Alu 27 294 -16 1841 56 0 9 chr15 82499655 82499886 -18880635 - L1PA7 LINE L1 0 6154 5926 191 353 59 0 chr15 82500624 82500692 -18879829 - MIR SINE MIR -171 91 20 579 179 65 8 chr15 82500766 82500889 -18879632 + FLAM_C SINE Alu 2 131 -2 189 107 0 0 chr15 82502366 82502394 -18878127 + (A)n Simple_repeat Simple_repeat 1 28 0 189 316 0 0 chr15 82503093 82503150 -18877371 + L2 LINE L2 3168 3224 -48 402 202 96 0 chr15 82503327 82503431 -18877090 - L1MB8 LINE L1 -44 6134 6021 295 167 0 0 chr15 82503433 82503475 -18877046 - 5S rRNA rRNA -79 42 1 4851 121 29 45 chr15 82503512 82504250 -18876271 - L1PA13 LINE L1 -14 6149 5425 1994 125 0 16 chr15 82504250 82504562 -18875959 - AluSx SINE Alu -5 307 1 4851 121 29 45 chr15 82504562 82504659 -18875862 - L1PA13 LINE L1 -738 5425 5328 788 201 70 42 chr15 82504674 82504838 -18875683 - L1MB8 LINE L1 -176 6002 5829 1815 154 7 3 chr15 82504838 82505137 -18875384 - AluJb SINE Alu -12 300 1 788 201 70 42 chr15 82505137 82505186 -18875335 - L1MB8 LINE L1 -349 5829 5783 13435 123 49 24 chr15 82505193 82505301 -18875220 - Tigger1 DNA MER2_type -2 2416 2312 1670 163 38 0 chr15 82505301 82505589 -18874932 + AluSx SINE Alu 1 299 -13 13435 123 49 24 chr15 82505589 82505698 -18874823 - Tigger1 DNA MER2_type -106 2312 2207 2043 97 0 45 chr15 82505698 82506009 -18874512 + AluSc SINE Alu 1 297 -12 13435 123 49 24 chr15 82506009 82507353 -18873168 - Tigger1 DNA MER2_type -211 2207 778 290 25 0 25 chr15 82507353 82507393 -18873128 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 13435 123 49 24 chr15 82507393 82508081 -18872440 - Tigger1 DNA MER2_type -1640 778 109 181 219 0 0 chr15 82509123 82509155 -18871366 - MIR3 SINE MIR -19 189 158 656 229 46 37 chr15 82509390 82509640 -18870881 + L1ME3 LINE L1 5920 6164 0 2198 99 0 28 chr15 82509877 82510199 -18870322 - AluSq SINE Alu 0 313 1 189 0 0 0 chr15 82510210 82510231 -18870290 + (A)n Simple_repeat Simple_repeat 1 21 0 199 307 123 26 chr15 82510231 82510345 -18870176 - L3 LINE CR1 -364 1213 1089 1307 122 45 5 chr15 82510347 82510569 -18869952 + AluJb SINE Alu 1 231 -81 873 98 202 81 chr15 82511466 82511639 -18868882 + MER46A DNA MER2_type 8 201 -35 729 234 7 7 chr15 82511930 82512084 -18868437 - AluJb SINE Alu -157 155 2 896 181 7 7 chr15 82512822 82512977 -18867544 - MER5A DNA MER1_type -33 156 2 2121 111 3 0 chr15 82513308 82513614 -18866907 - AluSx SINE Alu -5 307 1 220 241 19 0 chr15 82513930 82513984 -18866537 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 551 128 0 0 chr15 82514331 82514409 -18866112 - AluS SINE Alu -231 78 1 372 342 138 21 chr15 82515217 82515550 -18864971 - L1ME4a LINE L1 -4 6117 5746 201 147 0 0 chr15 82515557 82515591 -18864930 + (TG)n Simple_repeat Simple_repeat 2 35 0 2182 104 19 3 chr15 82515728 82516035 -18864486 - AluSx SINE Alu 0 312 1 822 203 152 70 chr15 82516510 82516879 -18863642 - Charlie1a DNA MER1_type 0 1455 1057 1183 172 0 10 chr15 82516910 82517114 -18863407 - AluJo SINE Alu -24 288 87 2186 177 150 91 chr15 82517118 82517681 -18862840 - Charlie1a DNA MER1_type -1847 914 385 1848 156 0 3 chr15 82517681 82517976 -18862545 - AluJb SINE Alu -6 306 13 2186 177 150 91 chr15 82517976 82518034 -18862487 - Charlie1a DNA MER1_type -2376 385 332 1700 172 3 3 chr15 82518034 82518330 -18862191 - AluSx SINE Alu -12 300 5 2186 177 150 91 chr15 82518330 82518508 -18862013 - Charlie1a DNA MER1_type -2429 332 67 2147 110 7 3 chr15 82518886 82519196 -18861325 + AluSp SINE Alu 1 311 -2 1944 109 6 16 chr15 82519335 82519646 -18860875 - AluSc SINE Alu -1 308 1 749 167 0 0 chr15 82520120 82520234 -18860287 - Tigger1 DNA MER2_type -2304 114 1 1328 207 107 10 chr15 82520234 82520543 -18859978 - L1M4 LINE L1 -395 5783 5445 1498 240 89 39 chr15 82520547 82521168 -18859353 + L1MC5 LINE L1 6876 7527 -434 1881 119 31 3 chr15 82521468 82521762 -18858759 + AluSx SINE Alu 1 302 -10 1242 193 0 8 chr15 82522085 82522324 -18858197 + AluJb SINE Alu 1 237 -75 3356 86 23 13 chr15 82522342 82522817 -18857704 - LTR15 LTR ERV1 -13 480 1 260 175 0 18 chr15 82522818 82522875 -18857646 + AluJb SINE Alu 239 294 -8 2067 114 17 0 chr15 82523236 82523525 -18856996 + AluSx SINE Alu 1 294 -18 2141 125 0 0 chr15 82523527 82523832 -18856689 + AluSx SINE Alu 1 305 -7 313 47 0 0 chr15 82523938 82523981 -18856540 + L1MA2 LINE L1 6262 6304 0 212 342 13 0 chr15 82524274 82524353 -18856168 - MIR SINE MIR -36 226 147 285 272 101 27 chr15 82524830 82525179 -18855342 + L1MEd LINE L1 940 1250 -4869 442 296 74 65 chr15 82525209 82525779 -18854742 + L1MEd LINE L1 1362 2043 -4267 296 301 12 12 chr15 82526298 82526381 -18854140 - MIR SINE MIR -62 146 64 1399 118 25 21 chr15 82526512 82526750 -18853771 + AluJb SINE Alu 42 280 -32 184 232 89 0 chr15 82526831 82526887 -18853634 + MIR SINE MIR 85 145 -63 230 286 190 19 chr15 82528802 82528960 -18851561 + MIR3 SINE MIR 4 192 -64 836 184 143 15 chr15 82532857 82533053 -18847468 - 7SLRNA srpRNA srpRNA -5 315 95 963 40 89 0 chr15 82533061 82533185 -18847336 + LTR15 LTR ERV1 350 484 -9 2059 118 0 0 chr15 82533249 82533536 -18846985 + AluSq SINE Alu 1 287 -26 247 312 121 50 chr15 82533803 82534002 -18846519 - L2 LINE L2 -963 2351 2139 211 263 145 0 chr15 82534097 82534173 -18846348 + L2 LINE L2 3163 3249 -23 271 308 159 28 chr15 82534455 82534637 -18845884 - L2 LINE L2 -1291 2023 1818 225 65 0 0 chr15 82534789 82534820 -18845701 + (TATG)n Simple_repeat Simple_repeat 2 32 0 195 114 0 0 chr15 82535049 82535084 -18845437 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 186 43 0 0 chr15 82535085 82535108 -18845413 + (GA)n Simple_repeat Simple_repeat 1 23 0 804 103 0 0 chr15 82535108 82535215 -18845306 - FLAM_C SINE Alu -36 107 1 218 134 52 21 chr15 82535630 82535727 -18844794 + (TA)n Simple_repeat Simple_repeat 1 100 0 1040 162 0 6 chr15 82535744 82535923 -18844598 - AluJb SINE Alu -3 309 132 393 191 0 0 chr15 82535923 82535986 -18844535 - AluS SINE Alu -239 64 2 260 237 75 11 chr15 82536078 82536171 -18844350 - L1P LINE L1 -1656 4490 4392 312 314 101 18 chr15 82536184 82536353 -18844168 - L1M4 LINE L1 -1773 4373 4191 2381 74 0 3 chr15 82536411 82536723 -18843798 + AluY SINE Alu 1 311 0 270 0 0 0 chr15 82537267 82537297 -18843224 + (TA)n Simple_repeat Simple_repeat 1 30 0 389 224 61 79 chr15 82537297 82537525 -18842996 + L1ME4a LINE L1 5895 6118 -3 1142 171 0 9 chr15 82537606 82537822 -18842699 + AluJb SINE Alu 99 312 0 260 234 202 16 chr15 82537853 82537977 -18842544 + Charlie1 DNA MER1_type 2363 2509 -252 783 131 41 7 chr15 82538034 82538179 -18842342 + Charlie1 DNA MER1_type 2612 2761 0 2050 123 3 3 chr15 82538648 82538948 -18841573 + AluSx SINE Alu 1 300 -12 363 23 0 0 chr15 82539084 82539128 -18841393 + (CA)n Simple_repeat Simple_repeat 2 45 0 342 0 0 0 chr15 82540436 82540474 -18840047 + (CA)n Simple_repeat Simple_repeat 2 39 0 2325 170 105 7 chr15 82541148 82541607 -18838914 - LTR9B LTR ERV1 0 644 141 1095 110 0 0 chr15 82541610 82541765 -18838756 + AluSg/x SINE Alu 154 308 -2 455 179 21 32 chr15 82541765 82541860 -18838661 - LTR9B LTR ERV1 -544 100 7 1128 175 31 73 chr15 82542423 82542850 -18837671 + LTR10B LTR ERV1 1 531 -16 1483 162 51 27 chr15 82543102 82543398 -18837123 - AluJo SINE Alu -9 303 1 195 355 66 42 chr15 82543997 82544163 -18836358 - L2 LINE L2 -2910 404 235 560 331 156 19 chr15 82544239 82544650 -18835871 - L3 LINE CR1 -881 696 230 361 283 136 23 chr15 82544650 82544827 -18835694 - MIR SINE MIR -8 254 58 370 211 275 0 chr15 82545044 82545153 -18835368 + MER5A DNA MER1_type 51 189 0 1708 172 17 0 chr15 82545263 82545554 -18834967 + AluJo SINE Alu 1 296 -16 359 205 164 98 chr15 82545931 82546060 -18834461 + L1MC4 LINE L1 7695 7814 -228 1383 171 94 17 chr15 82546060 82546347 -18834174 - AluJo SINE Alu -1 311 3 359 205 164 98 chr15 82546347 82546534 -18833987 + L1MC4 LINE L1 7814 8032 -10 2350 72 0 25 chr15 82546981 82547300 -18833221 - AluY SINE Alu 0 311 1 306 260 52 0 chr15 82549732 82549809 -18830712 - L2 LINE L2 -2 3311 3231 1956 121 0 0 chr15 82550064 82550369 -18830152 + AluSg1 SINE Alu 1 305 0 366 277 80 0 chr15 82550806 82550918 -18829603 + MIR SINE MIR 20 140 -122 417 251 312 0 chr15 82553339 82553554 -18826967 + L2 LINE L2 2999 3280 -33 2144 77 10 26 chr15 82554016 82554326 -18826195 - AluSx SINE Alu -7 305 1 1439 175 39 4 chr15 82554330 82554610 -18825911 - AluJo SINE Alu -20 292 3 1905 104 7 7 chr15 82554622 82554926 -18825595 - AluSg SINE Alu 0 304 1 261 83 0 0 chr15 82555885 82555921 -18824600 + (A)n Simple_repeat Simple_repeat 1 36 0 189 0 0 0 chr15 82556694 82556715 -18823806 + (T)n Simple_repeat Simple_repeat 1 21 0 192 155 107 131 chr15 82557539 82557623 -18822898 + MIR SINE MIR 38 119 -89 24 0 0 0 chr15 82557813 82557837 -18822684 + AT_rich Low_complexity Low_complexity 1 24 0 435 276 20 0 chr15 82557904 82558002 -18822519 + MER5A DNA MER1_type 10 109 -80 180 250 107 18 chr15 82557992 82558048 -18822473 - MER5B DNA MER1_type -117 61 1 * 2027 72 54 0 chr15 82558539 82558816 -18821705 - AluSg SINE Alu -18 292 1 2208 83 10 0 chr15 82559711 82560013 -18820508 - AluY SINE Alu -6 305 1 508 131 54 119 chr15 82560055 82560096 -18820425 - Charlie5 DNA MER1_type -1 2584 2542 1819 155 3 7 chr15 82560096 82560393 -18820128 - AluJb SINE Alu -16 296 1 508 131 54 119 chr15 82560393 82560474 -18820047 - Charlie5 DNA MER1_type -43 2542 2473 2186 93 0 0 chr15 82560474 82560763 -18819758 + AluSc SINE Alu 1 289 -20 508 131 54 119 chr15 82560763 82560807 -18819714 - Charlie5 DNA MER1_type -112 2473 2428 1741 159 81 15 chr15 82563685 82564019 -18816502 - L1MC1 LINE L1 -17 6316 5961 229 256 23 58 chr15 82564022 82564108 -18816413 - MIR SINE MIR -96 166 84 264 268 222 13 chr15 82564176 82564329 -18816192 + MER5A DNA MER1_type 2 186 -3 457 143 83 0 chr15 82567620 82567704 -18812817 - FLAM_C SINE Alu -23 120 30 240 216 0 0 chr15 82569167 82569218 -18811303 - MIR SINE MIR -62 146 96 211 156 22 50 chr15 82569935 82570114 -18810407 + A-rich Low_complexity Low_complexity 2 175 0 1950 104 4 4 chr15 82570311 82570590 -18809931 + AluSq SINE Alu 3 281 -32 1611 258 90 27 chr15 82570633 82571419 -18809102 + L1M4 LINE L1 2179 3014 -3132 579 270 55 18 chr15 82571431 82571594 -18808927 + AluJo SINE Alu 120 288 -24 2163 110 3 0 chr15 82571611 82571921 -18808600 + AluSx SINE Alu 1 311 -1 5748 213 91 35 chr15 82571937 82573125 -18807396 + L1M4 LINE L1 1 1121 -5525 627 203 39 0 chr15 82573125 82573253 -18807268 + AluJo/FLAM SINE Alu 1 133 -169 2238 89 3 13 chr15 82573255 82573569 -18806952 + AluY SINE Alu 1 311 0 5748 213 91 35 chr15 82573569 82574434 -18806087 + L1M4 LINE L1 1121 2157 -4489 1005 148 154 67 chr15 82574443 82574741 -18805780 + L1MA9 LINE L1 5989 6312 0 231 250 7 110 chr15 82574761 82574810 -18805711 + L1M4 LINE L1 2268 2320 -4326 2103 107 3 0 chr15 82574810 82575101 -18805420 + AluSp SINE Alu 1 292 -21 231 250 7 110 chr15 82575101 82575187 -18805334 + L1M4 LINE L1 2320 2389 -4257 1903 116 10 17 chr15 82575239 82575540 -18804981 + AluSx SINE Alu 1 299 -13 825 187 0 15 chr15 82575594 82575728 -18804793 + FLAM_C SINE Alu 1 132 -1 1519 209 24 51 chr15 82575763 82576054 -18804467 + L1M4 LINE L1 2485 2751 -3893 2296 105 3 3 chr15 82576054 82576360 -18804161 + AluSx SINE Alu 1 306 -6 1519 209 24 51 chr15 82576360 82576674 -18803847 + L1M4 LINE L1 2751 3072 -3572 * 3010 219 71 45 chr15 82576660 82577502 -18803019 - L1M4 LINE L1 -5678 864 1 4442 217 155 40 chr15 82577539 82577982 -18802539 + L1M4 LINE L1 3062 3453 -3191 1961 133 3 7 chr15 82577982 82578267 -18802254 + AluJb SINE Alu 12 295 -17 4442 217 155 40 chr15 82578267 82578532 -18801989 + L1M4 LINE L1 3453 3686 -2958 2198 126 3 0 chr15 82578532 82578833 -18801688 + AluSp SINE Alu 1 302 -11 4442 217 155 40 chr15 82578833 82579430 -18801091 + L1M4 LINE L1 3686 4213 -2431 2366 97 0 3 chr15 82579430 82579741 -18800780 + AluSx SINE Alu 1 310 -2 4442 217 155 40 chr15 82579741 82580224 -18800297 + L1M4 LINE L1 4213 5058 -1586 1261 159 0 36 chr15 82580227 82580447 -18800074 + AluJo SINE Alu 1 212 -100 305 249 90 62 chr15 82580490 82580667 -18799854 + L1M4 LINE L1 3053 3234 -2912 814 64 0 0 chr15 82580704 82580798 -18799723 + AluY SINE Alu 24 117 -194 195 114 0 0 chr15 82580798 82580833 -18799688 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 1008 261 60 87 chr15 82580835 82580967 -18799554 + L1M4 LINE L1 3323 3457 -2689 2276 115 3 0 chr15 82580967 82581272 -18799249 + AluSx SINE Alu 1 306 -6 1008 261 60 87 chr15 82581272 82581306 -18799215 + L1M4 LINE L1 3457 3490 -2656 2138 114 7 0 chr15 82581306 82581628 -18798893 + AluSg SINE Alu 1 324 0 1008 261 60 87 chr15 82581628 82582104 -18798417 + L1M4 LINE L1 3490 3950 -2196 1506 161 100 4 chr15 82582126 82582406 -18798115 - AluJb SINE Alu -4 308 2 247 193 0 0 chr15 82582551 82582608 -18797913 - GSATX Satellite centromeric -106 112 56 401 242 85 26 chr15 82582624 82582900 -18797621 - GSAT Satellite centromeric 0 292 1 830 189 46 13 chr15 82582916 82583069 -18797452 - AluJo SINE Alu -36 276 119 270 0 0 0 chr15 82583595 82583625 -18796896 + (TG)n Simple_repeat Simple_repeat 2 31 0 473 322 98 0 chr15 82583693 82583907 -18796614 - MIR SINE MIR -7 255 21 452 303 156 40 chr15 82584457 82585052 -18795469 + L1ME3A LINE L1 5506 6169 -1 1751 77 0 14 chr15 82585280 82585502 -18795019 - AluSq SINE Alu -11 302 84 673 184 41 20 chr15 82585589 82585736 -18794785 - L1MA10 LINE L1 -8 6326 6177 1231 186 146 11 chr15 82586094 82586369 -18794152 + MER2 DNA MER2_type 34 345 0 1824 135 84 0 chr15 82586377 82586651 -18793870 - AluSx SINE Alu -15 297 1 437 285 110 68 chr15 82586767 82587179 -18793342 - L2 LINE L2 -269 3044 2379 387 289 110 44 chr15 82587458 82587731 -18792790 + L1MC4a LINE L1 5678 5968 -153 1745 149 3 74 chr15 82587865 82588201 -18792320 + AluJb SINE Alu 1 312 0 21 36 0 0 chr15 82588354 82588382 -18792139 + AT_rich Low_complexity Low_complexity 1 28 0 289 324 70 0 chr15 82588691 82588833 -18791688 - L1ME LINE L1 -381 5740 5589 21 36 0 0 chr15 82589590 82589618 -18790903 + AT_rich Low_complexity Low_complexity 1 28 0 237 278 57 57 chr15 82590006 82590182 -18790339 + L2 LINE L2 3099 3274 -39 393 215 139 19 chr15 82591156 82591314 -18789207 - L1ME4a LINE L1 0 6121 5945 2384 80 7 7 chr15 82591420 82591721 -18788800 - AluSx SINE Alu -11 301 1 772 237 71 36 chr15 82591729 82591833 -18788688 + Charlie4 DNA MER1_type 3 102 -1859 2323 92 3 0 chr15 82591833 82592137 -18788384 - AluY SINE Alu -6 305 1 772 237 71 36 chr15 82592137 82592285 -18788236 + Charlie4 DNA MER1_type 102 264 -1697 390 206 65 0 chr15 82592289 82592381 -18788140 + Charlie4 DNA MER1_type 1864 1961 0 425 254 35 21 chr15 82592455 82592597 -18787924 - L1ME4a LINE L1 -436 5685 5542 2065 91 4 4 chr15 82593105 82593379 -18787142 + AluY SINE Alu 32 305 -6 268 291 120 62 chr15 82593976 82594251 -18786270 - MLT1K LTR MaLR -158 430 140 259 306 0 0 chr15 82594221 82594283 -18786238 - MLT1K LTR MaLR -350 238 177 * 2007 163 44 31 chr15 82594450 82594837 -18785684 + L1MB4 LINE L1 5431 5822 -361 711 193 0 18 chr15 82594838 82594952 -18785569 + FLAM_A SINE Alu 2 113 -29 1674 170 44 3 chr15 82594975 82595269 -18785252 + AluJb SINE Alu 2 307 -5 1858 163 42 0 chr15 82595275 82595606 -18784915 + L1MB4 LINE L1 5834 6178 -2 1275 213 132 107 chr15 82595675 82595765 -18784756 - Charlie2a DNA MER1_type -204 2658 2572 2363 97 0 3 chr15 82595765 82596075 -18784446 - AluSc SINE Alu 0 309 1 1275 213 132 107 chr15 82596075 82596157 -18784364 - Charlie2a DNA MER1_type -290 2572 2494 2961 13 0 0 chr15 82596157 82596475 -18784046 - AluYb8 SINE Alu 0 318 1 1275 213 132 107 chr15 82596475 82596662 -18783859 - Charlie2a DNA MER1_type -368 2494 2313 1420 190 141 0 chr15 82596662 82596925 -18783596 - AluJb SINE Alu -2 300 1 1275 213 132 107 chr15 82596925 82596982 -18783539 - Charlie2a DNA MER1_type -549 2313 2259 1875 158 27 0 chr15 82596982 82597280 -18783241 + AluSx SINE Alu 1 306 -6 1275 213 132 107 chr15 82597280 82597324 -18783197 - Charlie2a DNA MER1_type -603 2259 2218 2093 115 27 3 chr15 82597324 82597619 -18782902 - AluSx SINE Alu -6 306 5 1275 213 132 107 chr15 82597619 82597942 -18782579 - Charlie2a DNA MER1_type -644 2218 1905 2269 77 13 0 chr15 82597942 82598242 -18782279 - AluY SINE Alu -7 304 1 1275 213 132 107 chr15 82598242 82598278 -18782243 - Charlie2a DNA MER1_type -957 1905 1871 1606 177 16 51 chr15 82598278 82598589 -18781932 + AluJo SINE Alu 1 300 -12 1275 213 132 107 chr15 82598589 82598674 -18781847 - Charlie2a DNA MER1_type -991 1871 1725 23 54 0 0 chr15 82598696 82598733 -18781788 + AT_rich Low_complexity Low_complexity 1 37 0 1021 162 24 0 chr15 82598742 82598909 -18781612 + AluJo SINE Alu 1 171 -141 692 211 96 64 chr15 82598927 82599070 -18781451 - Charlie2a DNA MER1_type -1152 1710 1573 1734 162 0 7 chr15 82599070 82599360 -18781161 - AluJb SINE Alu -24 288 1 692 211 96 64 chr15 82599360 82599496 -18781025 - Charlie2a DNA MER1_type -1289 1573 1422 2300 209 116 71 chr15 82599653 82600887 -18779634 - L1ME2 LINE L1 -10 6154 4873 250 264 23 11 chr15 82600898 82600918 -18779603 - L1ME2 LINE L1 -1548 4598 4580 2216 160 11 3 chr15 82600918 82601281 -18779240 + MER47A DNA MER2_type 1 366 0 250 264 23 11 chr15 82601281 82601347 -18779174 - L1ME2 LINE L1 -1566 4580 4511 2206 113 0 16 chr15 82601349 82601659 -18778862 - AluSx SINE Alu -7 305 1 706 183 109 15 chr15 82602123 82602260 -18778261 - FRAM SINE Alu -16 150 1 487 210 196 21 chr15 82602262 82602405 -18778116 - MER5A DNA MER1_type -8 181 14 1066 179 12 47 chr15 82605776 82606065 -18774456 + LTR10B-int LTR ERV1 572 849 -5811 27227 240 29 27 chr15 82606124 82612821 -18767700 + LTR10B-int LTR ERV1 1074 7783 -2 1435 225 252 9 chr15 82612825 82613265 -18767256 + LTR10B LTR ERV1 1 547 0 589 193 121 0 chr15 82614702 82614842 -18765679 + L1MC5 LINE L1 7695 7851 -110 1658 151 49 26 chr15 82614870 82615174 -18765347 + AluJb SINE Alu 1 311 -1 351 0 0 0 chr15 82616203 82616242 -18764279 + (CA)n Simple_repeat Simple_repeat 2 40 0 217 163 0 23 chr15 82616242 82616285 -18764236 + GA-rich Low_complexity Low_complexity 3 44 0 1411 157 21 32 chr15 82616650 82616918 -18763603 - MLT1D LTR MaLR -2 503 248 1779 227 38 52 chr15 82616918 82617517 -18763004 + L1MB7 LINE L1 3917 4507 -1639 * 3527 174 56 11 chr15 82617505 82618593 -18761928 + L1MB7 LINE L1 4796 5929 -249 366 126 11 55 chr15 82618597 82618780 -18761741 + (TA)n Simple_repeat Simple_repeat 1 175 0 522 49 126 4 chr15 82618802 82619269 -18761252 + (ATATG)n Simple_repeat Simple_repeat 1 523 0 408 49 110 24 chr15 82619297 82619461 -18761060 + (ATATG)n Simple_repeat Simple_repeat 3 180 0 266 132 66 40 chr15 82619462 82619538 -18760983 + (CATAT)n Simple_repeat Simple_repeat 2 79 0 945 214 33 5 chr15 82619538 82619753 -18760768 + L1MB7 LINE L1 5918 6138 -46 856 142 21 7 chr15 82619753 82619894 -18760627 + FRAM SINE Alu 1 140 -36 288 0 0 0 chr15 82619902 82619934 -18760587 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1381 116 53 36 chr15 82622957 82623089 -18757432 + MER30 DNA MER1_type 2 141 -89 2287 91 3 0 chr15 82623089 82623385 -18757136 - AluSx SINE Alu -15 297 1 1381 116 53 36 chr15 82623385 82623477 -18757044 + MER30 DNA MER1_type 141 230 0 269 295 169 18 chr15 82623954 82624120 -18756401 - MIR SINE MIR -51 211 21 529 301 130 25 chr15 82624209 82624531 -18755990 - L2 LINE L2 -2 3311 2956 865 314 71 26 chr15 82826318 82826814 -18553707 + ERVL LTR ERVL 3032 3549 -2215 660 346 44 6 chr15 82826871 82827232 -18553289 + ERVL LTR ERVL 4368 4742 -1022 327 306 18 0 chr15 82827339 82827450 -18553071 + ERVL LTR ERVL 4884 4996 -768 290 183 99 14 chr15 82827601 82827672 -18552849 + ERVL LTR ERVL 5197 5273 -491 303 242 0 50 chr15 82828294 82828393 -18552128 + LTR67 LTR ERVL 457 550 -7 274 233 17 0 chr15 82828437 82828497 -18552024 + L2 LINE L2 3209 3269 -3 801 140 0 52 chr15 82830932 82831068 -18549453 - FLAM_C SINE Alu -4 129 1 518 263 132 28 chr15 82832374 82832587 -18547934 + MIR SINE MIR 28 262 0 295 258 50 58 chr15 82832678 82832798 -18547723 - MIR SINE MIR -56 206 88 1977 134 62 0 chr15 82832866 82833156 -18547365 - AluSx SINE Alu -4 308 1 187 313 78 0 chr15 82836349 82836413 -18544108 + L2 LINE L2 3186 3254 -59 743 216 64 101 chr15 82836640 82837784 -18542737 + L1MC5 LINE L1 6661 7668 -293 1859 121 4 0 chr15 82837844 82838100 -18542421 + AluSx SINE Alu 34 290 -22 227 204 0 0 chr15 82838109 82838158 -18542363 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 417 258 62 51 chr15 82838280 82838458 -18542063 - MER5A DNA MER1_type -9 180 1 607 250 88 5 chr15 82839192 82839384 -18541137 + MIR SINE MIR 16 223 -39 279 262 97 19 chr15 82839988 82840091 -18540430 - MIR SINE MIR -20 242 132 563 313 70 13 chr15 82843030 82843257 -18537264 - MIR SINE MIR -18 244 5 281 287 8 25 chr15 82843970 82844092 -18536429 + HAL1b LINE L1 710 829 -519 315 140 158 0 chr15 82844408 82844465 -18536056 + AluJo/FLAM SINE Alu 48 113 -189 2314 116 3 0 chr15 82844468 82844779 -18535742 - AluSx SINE Alu 0 312 1 30 45 0 0 chr15 82844783 82844827 -18535694 + AT_rich Low_complexity Low_complexity 1 44 0 1903 134 32 7 chr15 82844911 82845194 -18535327 - AluSg SINE Alu -10 300 11 2070 139 0 0 chr15 82845197 82845500 -18535021 - AluSx SINE Alu 0 303 1 2202 117 10 0 chr15 82846244 82846535 -18533986 + AluSx SINE Alu 1 294 -18 252 0 0 0 chr15 82846538 82846566 -18533955 + (CAA)n Simple_repeat Simple_repeat 2 29 0 2146 161 0 0 chr15 82846578 82846889 -18533632 + AluSx SINE Alu 1 311 -1 2103 134 3 0 chr15 82846893 82847200 -18533321 + AluSx SINE Alu 1 308 0 301 242 274 0 chr15 82847639 82847734 -18532787 + L2 LINE L2 3192 3312 -1 2647 40 0 0 chr15 82848463 82848759 -18531762 + AluY SINE Alu 1 296 -15 1360 154 5 5 chr15 82849398 82849618 -18530903 - AluJo SINE Alu -4 308 89 272 255 0 0 chr15 82851073 82851124 -18529397 - MIR3 SINE MIR -7 201 151 354 264 35 62 chr15 82851163 82851307 -18529214 - MER5B DNA MER1_type -17 161 22 287 161 18 36 chr15 82851310 82851366 -18529155 - MIR3 SINE MIR -49 159 105 1863 222 126 47 chr15 82851686 82852035 -18528486 + L2 LINE L2 2304 2624 -689 1057 165 12 0 chr15 82852035 82852205 -18528316 + FAM SINE Alu 2 173 -2 1863 222 126 47 chr15 82852205 82852690 -18527831 + L2 LINE L2 2624 3207 -106 2206 127 3 0 chr15 82852733 82853033 -18527488 + AluSq SINE Alu 1 301 -12 225 198 0 81 chr15 82853417 82853436 -18527085 + A-rich Low_complexity Low_complexity 4 23 -59 2325 108 6 22 chr15 82853436 82853751 -18526770 + AluSx SINE Alu 1 310 -2 225 198 0 81 chr15 82853751 82853786 -18526735 + A-rich Low_complexity Low_complexity 23 59 -23 1759 158 19 53 chr15 82853786 82854109 -18526412 + AluJb SINE Alu 1 312 0 225 198 0 81 chr15 82854109 82854126 -18526395 + A-rich Low_complexity Low_complexity 59 71 -11 570 114 0 48 chr15 82854126 82854231 -18526290 + L1MB7 LINE L1 6084 6183 -1 225 198 0 81 chr15 82854231 82854243 -18526278 + A-rich Low_complexity Low_complexity 71 82 0 1812 131 3 95 chr15 82854648 82854985 -18525536 + AluSx SINE Alu 1 306 -6 306 0 0 0 chr15 82855233 82855267 -18525254 + (CA)n Simple_repeat Simple_repeat 2 35 0 199 140 40 0 chr15 82855310 82855360 -18525161 + CT-rich Low_complexity Low_complexity 2 53 0 213 161 65 16 chr15 82855373 82855435 -18525086 + CT-rich Low_complexity Low_complexity 3 67 0 395 188 8 77 chr15 82855678 82855795 -18524726 + L1MC5 LINE L1 7721 7829 -132 1205 143 6 0 chr15 82855795 82855970 -18524551 + AluJb SINE Alu 135 310 -2 263 275 50 0 chr15 82855971 82856051 -18524470 + L1MC5 LINE L1 7823 7906 -55 1469 128 43 9 chr15 82856099 82856140 -18524381 + L1MB3 LINE L1 5451 5489 -713 2310 112 3 0 chr15 82856140 82856444 -18524077 + AluSc SINE Alu 3 307 -2 1469 128 43 9 chr15 82856444 82857083 -18523438 + L1MB3 LINE L1 5489 6202 0 675 193 253 0 chr15 82857474 82857676 -18522845 + MIR SINE MIR 5 257 -5 191 271 51 0 chr15 82857975 82858034 -18522487 + MER5B DNA MER1_type 115 176 -2 * 374 308 10 10 chr15 82858000 82858104 -18522417 - MER5B DNA MER1_type -2 176 73 360 290 20 10 chr15 82859075 82859175 -18521346 - MIR3 SINE MIR -7 201 101 250 276 17 0 chr15 82859382 82859440 -18521081 + MER5B DNA MER1_type 54 112 -66 1211 290 53 15 chr15 82859477 82859874 -18520647 + L2 LINE L2 2897 3308 -5 2238 128 0 7 chr15 82860708 82861006 -18519515 + AluSq SINE Alu 1 296 -17 577 186 30 108 chr15 82861359 82861526 -18518995 - L2 LINE L2 -1 3312 3159 342 239 53 69 chr15 82861598 82861816 -18518705 - L2 LINE L2 -307 3006 2701 180 138 0 0 chr15 82861865 82861894 -18518627 - L2 LINE L2 -597 2717 2689 1535 197 0 47 chr15 82863045 82863344 -18517177 - AluJb SINE Alu -27 285 1 1093 201 0 0 chr15 82863480 82863659 -18516862 - AluJo SINE Alu -133 179 1 2343 81 10 7 chr15 82863678 82863975 -18516546 - AluSq SINE Alu -15 298 1 2496 76 0 3 chr15 82863999 82864302 -18516219 - AluSx SINE Alu -10 302 1 2446 62 3 0 chr15 82864310 82864599 -18515922 - AluY SINE Alu -21 290 1 279 325 106 94 chr15 82864875 82865281 -18515240 + L2 LINE L2 2846 3256 -16 921 129 7 21 chr15 82865297 82865437 -18515084 + AluJo SINE Alu 1 138 -174 332 123 0 0 chr15 82865441 82865498 -18515023 + Alu SINE Alu 245 301 -1 2042 104 57 4 chr15 82865575 82865855 -18514666 - AluSc SINE Alu -14 295 1 180 0 0 0 chr15 82865896 82865916 -18514605 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2113 119 0 11 chr15 82865919 82866204 -18514317 - AluSx SINE Alu -30 282 1 2311 112 0 0 chr15 82866708 82867012 -18513509 + AluSx SINE Alu 1 304 -8 376 304 77 25 chr15 82867812 82868052 -18512469 + L2 LINE L2 2736 3046 -226 770 145 8 0 chr15 82868420 82868537 -18511984 + FLAM_C SINE Alu 1 118 -15 2255 132 0 0 chr15 82868547 82868858 -18511663 - AluSx SINE Alu -1 311 1 38 22 0 0 chr15 82868867 82868912 -18511609 + AT_rich Low_complexity Low_complexity 1 45 0 590 270 81 6 chr15 82868931 82869105 -18511416 - MIR SINE MIR -51 211 25 417 316 73 39 chr15 82869095 82869329 -18511192 + MIR SINE MIR 21 262 0 * 516 278 80 77 chr15 82869468 82870155 -18510366 + L2 LINE L2 2665 3313 0 2306 95 0 3 chr15 82870166 82870461 -18510060 - AluSx SINE Alu -18 294 1 483 250 83 0 chr15 82870480 82870600 -18509921 + L2 LINE L2 3142 3271 -1 218 211 23 47 chr15 82871554 82871682 -18508839 + (CGG)n Simple_repeat Simple_repeat 3 127 0 240 180 20 60 chr15 82871702 82871802 -18508719 + (CCCGG)n Simple_repeat Simple_repeat 2 97 0 275 247 7 48 chr15 82871818 82872013 -18508508 + (CGG)n Simple_repeat Simple_repeat 1 186 0 1961 167 93 0 chr15 82872245 82872598 -18507923 + MLT1B LTR MaLR 3 388 -2 430 293 142 86 chr15 82872777 82873326 -18507195 - L1 LINE L1 -2647 3499 2920 1786 158 40 10 chr15 82873794 82874097 -18506424 - AluSx SINE Alu 0 312 1 28 29 0 0 chr15 82874464 82874499 -18506022 + AT_rich Low_complexity Low_complexity 1 35 0 444 246 82 0 chr15 82874753 82874863 -18505658 + L1MDa LINE L1 21 139 -6401 267 31 0 0 chr15 82875396 82875428 -18505093 + (TG)n Simple_repeat Simple_repeat 1 32 0 23 33 0 0 chr15 82875692 82875722 -18504799 + AT_rich Low_complexity Low_complexity 1 30 0 27 62 0 0 chr15 82875889 82875937 -18504584 + AT_rich Low_complexity Low_complexity 1 48 0 5542 56 3 0 chr15 82876115 82876796 -18503725 + L1PA7 LINE L1 5459 6141 -13 332 328 38 76 chr15 82876930 82877168 -18503353 + L1ME3A LINE L1 5923 6151 -19 21 0 0 0 chr15 82878283 82878304 -18502217 + AT_rich Low_complexity Low_complexity 1 21 0 573 288 47 30 chr15 82878369 82878602 -18501919 - L3b LINE CR1 -116 1467 1231 1775 93 7 15 chr15 82878805 82879075 -18501446 - AluY SINE Alu 0 311 44 414 143 0 0 chr15 82879524 82879587 -18500934 - MSTA LTR MaLR -365 63 1 368 287 56 60 chr15 82880273 82880489 -18500032 + L1ME1 LINE L1 5925 6139 -27 264 59 0 0 chr15 82880862 82880896 -18499625 + (CA)n Simple_repeat Simple_repeat 1 34 0 306 262 70 75 chr15 82881306 82881493 -18499028 + L1M4 LINE L1 3076 3261 -2885 438 336 192 20 chr15 82883496 82884173 -18496348 - L2 LINE L2 -5 3267 2473 333 326 53 23 chr15 82884185 82884317 -18496204 - L2 LINE L2 -493 2821 2686 1816 149 7 7 chr15 82884378 82884679 -18495842 - AluJb SINE Alu -10 302 2 2135 118 0 0 chr15 82885008 82885304 -18495217 - AluSx SINE Alu -16 296 1 3387 147 101 45 chr15 82885543 82885985 -18494536 - L1MB7 LINE L1 -91 6093 5677 1563 50 0 20 chr15 82885985 82886185 -18494336 + L1PA7 LINE L1 5959 6154 0 3387 147 101 45 chr15 82886185 82886409 -18494112 - L1MB7 LINE L1 -507 5677 5467 2099 98 7 3 chr15 82886409 82886704 -18493817 - AluSx SINE Alu -16 296 1 3387 147 101 45 chr15 82886704 82886860 -18493661 - L1MB7 LINE L1 -717 5467 5207 225 208 52 0 chr15 82886986 82887063 -18493458 + (TA)n Simple_repeat Simple_repeat 2 82 0 1850 125 7 4 chr15 82887883 82888163 -18492358 + AluSx SINE Alu 17 297 -15 710 191 0 24 chr15 82888166 82888292 -18492229 - AluJo/FLAM SINE Alu -188 124 2 1585 156 12 58 chr15 82888364 82888691 -18491830 - AluJo SINE Alu 0 312 1 2177 99 0 3 chr15 82888701 82888995 -18491526 - AluSc SINE Alu -16 293 1 415 190 0 0 chr15 82888996 82889075 -18491446 + MLT2E LTR ERVL 548 626 -2 482 132 0 0 chr15 82889437 82889505 -18491016 + AluJ/FLAM SINE Alu 1 68 -244 2335 56 7 3 chr15 82889621 82889924 -18490597 - AluY SINE Alu -7 304 1 231 220 84 9 chr15 82889972 82890091 -18490430 - L1P LINE L1 -755 5396 5270 3227 112 48 10 chr15 82890101 82890599 -18489922 - LTR9B LTR ERV1 -86 558 42 1376 131 0 0 chr15 82890605 82890803 -18489718 - HUERS-P3 LTR ERV1 -1 8918 8721 1444 105 0 0 chr15 82890845 82891045 -18489476 - LTR9B LTR ERV1 0 644 445 21 36 0 0 chr15 82891413 82891441 -18489080 + AT_rich Low_complexity Low_complexity 1 28 0 760 162 15 37 chr15 82891442 82891578 -18488943 - FLAM_C SINE Alu 0 133 1 2153 119 0 0 chr15 82891911 82892213 -18488308 - AluSx SINE Alu -10 302 1 240 35 0 0 chr15 82892697 82892726 -18487795 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1860 117 7 14 chr15 82892959 82893274 -18487247 - AluSx SINE Alu 0 312 1 275 274 101 30 chr15 82893377 82893545 -18486976 - L1P5 LINE L1 -432 5724 5545 2058 134 0 0 chr15 82897233 82897538 -18482983 - AluSx SINE Alu -7 305 1 2152 114 0 3 chr15 82898768 82899075 -18481446 - AluSx SINE Alu -3 309 4 362 256 29 107 chr15 82899615 82899924 -18480597 - L1MC5 LINE L1 -280 7681 7397 305 283 33 33 chr15 82899926 82900046 -18480475 - L1MC5 LINE L1 -530 7431 7312 419 278 72 36 chr15 82900222 82900445 -18480076 - L1MC5 LINE L1 -740 7221 6991 4084 146 14 63 chr15 82900478 82900857 -18479664 - L1MB2 LINE L1 -1 6170 5774 1632 115 12 118 chr15 82900857 82901187 -18479334 + AluSg SINE Alu 1 295 -15 4084 146 14 63 chr15 82901187 82901597 -18478924 - L1MB2 LINE L1 -397 5774 5052 338 192 92 33 chr15 82901597 82901717 -18478804 - L1MC4 LINE L1 -981 7061 5381 454 337 192 18 chr15 82903498 82904174 -18476347 - L2 LINE L2 -5 3267 2473 333 326 53 23 chr15 82904186 82904318 -18476203 - L2 LINE L2 -493 2821 2686 1816 149 7 7 chr15 82904379 82904680 -18475841 - AluJb SINE Alu -10 302 2 2135 118 0 0 chr15 82905009 82905305 -18475216 - AluSx SINE Alu -16 296 1 3387 147 101 45 chr15 82905545 82905987 -18474534 - L1MB7 LINE L1 -91 6093 5677 1563 50 0 20 chr15 82905987 82906187 -18474334 + L1PA7 LINE L1 5959 6154 0 3387 147 101 45 chr15 82906187 82906411 -18474110 - L1MB7 LINE L1 -507 5677 5467 2064 98 7 7 chr15 82906411 82906707 -18473814 - AluSx SINE Alu -16 296 1 3387 147 101 45 chr15 82906707 82906863 -18473658 - L1MB7 LINE L1 -717 5467 5207 225 208 52 0 chr15 82906989 82907066 -18473455 + (TA)n Simple_repeat Simple_repeat 2 82 0 1903 122 3 7 chr15 82907886 82908173 -18472348 + AluSx SINE Alu 17 304 -8 395 19 19 0 chr15 82908173 82908225 -18472296 + (TA)n Simple_repeat Simple_repeat 2 54 0 522 176 92 46 chr15 82908746 82908877 -18471644 + MER3 DNA MER1_type 48 184 -25 1665 151 14 4 chr15 82908911 82909190 -18471331 - AluSx SINE Alu -30 282 1 564 284 90 19 chr15 82912663 82912931 -18467590 + L1MC4a LINE L1 5600 5886 -1922 1745 145 7 14 chr15 82912970 82913280 -18467241 + AluJb SINE Alu 3 310 0 1035 164 0 0 chr15 82913280 82913445 -18467076 + AluJb SINE Alu 134 298 -14 195 42 0 0 chr15 82914060 82914084 -18466437 + (GGA)n Simple_repeat Simple_repeat 3 26 0 368 268 127 14 chr15 82916732 82916874 -18463647 - MIR SINE MIR -10 252 95 209 308 31 0 chr15 82917586 82917651 -18462870 + L2 LINE L2 3154 3220 -52 189 94 0 0 chr15 82917651 82917683 -18462838 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 432 249 63 104 chr15 82917686 82917955 -18462566 - L1ME4a LINE L1 -16 6105 5848 185 108 27 0 chr15 82918022 82918059 -18462462 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 702 294 74 0 chr15 82918476 82918699 -18461822 - MIR SINE MIR -17 245 4 2288 66 0 50 chr15 82918760 82919080 -18461441 - AluY SINE Alu -7 304 1 1925 138 0 7 chr15 82919726 82920023 -18460498 - AluJo SINE Alu -6 306 12 1988 114 0 0 chr15 82920210 82920491 -18460030 + AluSg SINE Alu 13 293 -17 283 148 0 66 chr15 82920760 82920821 -18459700 + U2 snRNA snRNA 2 58 -130 2100 109 0 3 chr15 82921408 82921702 -18458819 - AluSx SINE Alu -19 293 1 742 296 208 23 chr15 82922630 82923144 -18457377 + L3 LINE CR1 924 1532 -45 1754 156 7 23 chr15 82923525 82923827 -18456694 + AluJo SINE Alu 1 297 -15 2296 66 0 7 chr15 82924487 82924790 -18455731 + AluY SINE Alu 2 302 -9 1630 161 31 7 chr15 82925463 82925749 -18454772 - AluJo SINE Alu -19 293 1 403 273 76 41 chr15 82925798 82925970 -18454551 + L2 LINE L2 3133 3310 -3 458 257 34 27 chr15 82925975 82926123 -18454398 - MIR3 SINE MIR -35 173 25 236 263 93 139 chr15 82926248 82926317 -18454204 + L3 LINE CR1 658 729 -848 999 92 0 8 chr15 82926317 82926447 -18454074 + FLAM_C SINE Alu 1 129 -4 236 263 93 139 chr15 82926447 82926700 -18453821 + L3 LINE CR1 729 965 -612 309 333 23 111 chr15 82926982 82927288 -18453233 + L2 LINE L2 2906 3184 -88 330 302 63 16 chr15 82927421 82927547 -18452974 + L3 LINE CR1 1248 1379 -198 2495 33 0 20 chr15 82928218 82928518 -18452003 + AluY SINE Alu 1 294 -17 194 336 55 18 chr15 82928673 82928783 -18451738 - L2 LINE L2 -15 3298 3185 21 0 0 0 chr15 82929158 82929179 -18451342 + GC_rich Low_complexity Low_complexity 1 21 0 351 195 11 97 chr15 82929278 82929463 -18451058 + G-rich Low_complexity Low_complexity 1 169 0 2280 114 0 3 chr15 82932401 82932709 -18447812 - AluSx SINE Alu -3 309 3 816 200 7 0 chr15 82932718 82932853 -18447668 - AluJo SINE Alu -176 136 1 180 176 0 0 chr15 82933646 82933680 -18446841 + CT-rich Low_complexity Low_complexity 2 35 0 183 290 101 48 chr15 82933747 82933954 -18446567 - L2 LINE L2 -251 3021 2804 1676 146 56 28 chr15 82935650 82935938 -18444583 - AluJo SINE Alu -16 296 1 2382 85 10 0 chr15 82937098 82937404 -18443117 - AluSc SINE Alu 0 309 1 965 256 50 8 chr15 82939929 82940171 -18440350 + MIR SINE MIR 3 254 -8 365 270 72 0 chr15 82940663 82940774 -18439747 - MIR SINE MIR -71 191 73 219 381 61 14 chr15 82940790 82940937 -18439584 + L2 LINE L2 2828 2981 -291 603 223 124 21 chr15 82940950 82941192 -18439329 - HAL1 LINE L1 0 2507 2241 3296 111 24 69 chr15 82941241 82941862 -18438659 - LTR43 LTR ERV1 0 602 10 865 234 141 34 chr15 82941893 82942341 -18438180 - HAL1 LINE L1 -322 2185 1690 3644 255 146 20 chr15 82942400 82942609 -18437912 - HAL1 LINE L1 -616 1891 1710 1724 152 39 35 chr15 82942609 82942797 -18437724 - AluJb SINE Alu -1 311 120 231 36 0 0 chr15 82942797 82942825 -18437696 + (TG)n Simple_repeat Simple_repeat 1 28 0 1724 152 39 35 chr15 82942825 82942946 -18437575 - AluJb SINE Alu -192 120 1 3644 255 146 20 chr15 82942946 82944416 -18436105 - HAL1 LINE L1 -797 1710 1 254 333 183 24 chr15 82944418 82944664 -18435857 + L2 LINE L2 2974 3258 -14 293 82 20 0 chr15 82945882 82945931 -18434590 + (TG)n Simple_repeat Simple_repeat 1 50 0 457 256 45 9 chr15 82946102 82946245 -18434276 + MIR SINE MIR 16 168 -51 792 264 14 14 chr15 82946254 82946466 -18434055 + MIR SINE MIR 51 262 0 500 253 103 35 chr15 82947412 82947586 -18432935 - L2 LINE L2 -6 3307 3122 228 296 31 31 chr15 82947654 82947752 -18432769 + L2 LINE L2 2992 3089 -183 3687 244 123 15 chr15 82947771 82949377 -18431144 - L2 LINE L2 -1 3312 1461 269 318 108 23 chr15 82949403 82949532 -18430989 + L2 LINE L2 3133 3272 0 217 298 18 0 chr15 82950058 82950115 -18430406 + (TGGA)n Simple_repeat Simple_repeat 1 58 0 2130 99 7 7 chr15 82950530 82950851 -18429670 - AluSx SINE Alu 0 321 1 233 194 60 30 chr15 82951411 82951478 -18429043 + MIR SINE MIR 84 152 -56 236 140 0 105 chr15 82953401 82953458 -18427063 + MIR SINE MIR 134 184 -78 396 200 0 55 chr15 82953864 82953943 -18426578 - MER53 DNA DNA -84 105 32 1883 148 34 24 chr15 82953943 82954263 -18426258 - AluSx SINE Alu 0 312 1 396 200 0 55 chr15 82954263 82954293 -18426228 - MER53 DNA DNA -157 32 2 1703 130 0 4 chr15 82955114 82955345 -18425176 + AluSx SINE Alu 1 230 -82 349 273 9 0 chr15 82955546 82955656 -18424865 + L1MEd LINE L1 541 651 -5468 21 57 0 0 chr15 82955657 82955692 -18424829 + AT_rich Low_complexity Low_complexity 1 35 0 2141 152 0 13 chr15 82955743 82955878 -18424643 + AluSx SINE Alu 2 137 -175 2266 117 0 10 chr15 82955878 82956187 -18424334 + AluSg1 SINE Alu 1 306 -3 2141 152 0 13 chr15 82956187 82956360 -18424161 + AluSx SINE Alu 137 306 -6 330 249 60 84 chr15 82956382 82956504 -18424017 + L1MEd LINE L1 639 773 -5258 2399 96 0 0 chr15 82956504 82956797 -18423724 + AluSx SINE Alu 1 293 -19 330 249 60 84 chr15 82956797 82956861 -18423660 + L1MEd LINE L1 773 837 -5194 400 361 55 58 chr15 82956882 82957209 -18423312 + L1MDa LINE L1 21 346 -6194 2122 132 0 28 chr15 82957706 82958024 -18422497 + AluSx SINE Alu 1 309 -3 638 269 57 80 chr15 82958025 82958412 -18422109 + L1MDa LINE L1 913 1290 -5253 1154 184 15 10 chr15 82958412 82958636 -18421885 + AluJb SINE Alu 82 306 0 4318 217 42 51 chr15 82958636 82958669 -18421852 + L1MDa LINE L1 1280 1312 -5228 1670 122 21 56 chr15 82958669 82958955 -18421566 - AluSq SINE Alu 0 313 38 4318 217 42 51 chr15 82958955 82959706 -18420815 + L1MDa LINE L1 1312 2068 -4472 2240 121 0 10 chr15 82959706 82960019 -18420502 + AluSx SINE Alu 1 310 -2 4318 217 42 51 chr15 82960019 82960789 -18419732 + L1MDa LINE L1 2068 2843 -3697 2453 87 0 16 chr15 82960789 82961099 -18419422 + AluSp SINE Alu 1 305 -8 4318 217 42 51 chr15 82961099 82962120 -18418401 + L1MDa LINE L1 2843 3835 -2705 1778 182 3 22 chr15 82962298 82962616 -18417905 - AluJo SINE Alu 0 312 1 324 0 0 0 chr15 82962809 82962845 -18417676 + (CA)n Simple_repeat Simple_repeat 2 37 0 186 224 86 0 chr15 82962901 82962959 -18417562 - L2 LINE L2 0 3313 3251 190 347 32 16 chr15 82963088 82963212 -18417309 - L2 LINE L2 -213 3059 2934 422 208 216 72 chr15 82963363 82963627 -18416894 - L1MC4a LINE L1 -1630 6178 5877 856 264 22 0 chr15 82963656 82963887 -18416634 - L1MC4a LINE L1 -2019 5789 5554 2418 164 35 5 chr15 82963915 82964348 -18416173 - MER44D DNA MER2_type 0 605 105 743 148 0 0 chr15 82964546 82964661 -18415860 - MER44D DNA MER2_type -590 115 1 610 256 74 43 chr15 82964690 82965014 -18415507 - L2 LINE L2 -529 2785 2452 2256 121 0 3 chr15 82965260 82965558 -18414963 + AluSx SINE Alu 1 297 -15 881 147 84 0 chr15 82965571 82965714 -18414807 + FAM SINE Alu 20 174 -11 784 188 0 15 chr15 82965798 82965931 -18414590 + FLAM_C SINE Alu 2 132 -11 22 0 0 0 chr15 82965931 82965953 -18414568 + AT_rich Low_complexity Low_complexity 1 22 0 1717 166 14 10 chr15 82966244 82966534 -18413987 + AluJb SINE Alu 1 291 -21 2394 76 3 10 chr15 82966555 82966858 -18413663 + AluSg SINE Alu 1 301 -9 2138 120 3 13 chr15 82966866 82967165 -18413356 + AluSx SINE Alu 1 296 -16 1740 156 12 58 chr15 82967175 82967502 -18413019 + AluJo SINE Alu 1 312 0 730 191 0 24 chr15 82967574 82967700 -18412821 + FLAM_C SINE Alu 2 124 -19 1510 172 17 34 chr15 82967705 82968001 -18412520 - AluSx SINE Alu -20 292 2 431 171 13 13 chr15 82968018 82968094 -18412427 + FLAM SINE Alu 54 129 -14 870 168 15 0 chr15 82969397 82969528 -18410993 + FLAM_A SINE Alu 1 133 0 1916 133 30 26 chr15 82969562 82969864 -18410657 + AluSq SINE Alu 1 303 -10 962 112 0 8 chr15 82970108 82970242 -18410279 - FLAM_C SINE Alu 0 133 1 2172 122 0 10 chr15 82970256 82970551 -18409970 - AluSx SINE Alu -20 292 1 2251 122 0 0 chr15 82971055 82971359 -18409162 + AluSx SINE Alu 1 304 -8 376 304 77 25 chr15 82972159 82972399 -18408122 + L2 LINE L2 2736 3046 -226 770 145 8 0 chr15 82972767 82972884 -18407637 + FLAM_C SINE Alu 1 118 -15 2210 132 3 0 chr15 82972894 82973204 -18407317 - AluSx SINE Alu -1 311 1 38 22 0 0 chr15 82973213 82973258 -18407263 + AT_rich Low_complexity Low_complexity 1 45 0 600 257 77 16 chr15 82973277 82973460 -18407061 - MIR SINE MIR -51 211 18 466 308 73 39 chr15 82973441 82973675 -18406846 + MIR SINE MIR 21 262 0 * 516 278 80 77 chr15 82973814 82974501 -18406020 + L2 LINE L2 2665 3313 0 2306 95 0 3 chr15 82974512 82974807 -18405714 - AluSx SINE Alu -18 294 1 483 250 83 0 chr15 82974826 82974946 -18405575 + L2 LINE L2 3142 3271 -1 201 230 0 40 chr15 82975899 82975973 -18404548 + (CGG)n Simple_repeat Simple_repeat 3 73 0 586 204 0 0 chr15 82976330 82976433 -18404088 + AluSp/q SINE Alu 202 304 -9 1105 202 8 51 chr15 82976460 82976478 -18404043 - ERVL LTR ERVL -887 4877 4860 2317 97 7 0 chr15 82976478 82976768 -18403753 - AluSx SINE Alu -20 292 1 1105 202 8 51 chr15 82976768 82977002 -18403519 - ERVL LTR ERVL -904 4860 4636 376 231 13 137 chr15 82977009 82977116 -18403405 - LTR41 LTR ERVL -19 754 690 2060 148 0 10 chr15 82977116 82977420 -18403101 + AluJo SINE Alu 1 301 -11 376 231 13 137 chr15 82977420 82977546 -18402975 - LTR41 LTR ERVL -83 690 550 556 289 29 12 chr15 82977766 82977939 -18402582 - LTR41 LTR ERVL -594 179 4 3930 257 39 23 chr15 82977942 82979403 -18401118 - ERVL LTR ERVL -1122 4642 3123 1063 183 53 30 chr15 82979438 82979701 -18400820 - L1MEc LINE L1 -2507 3708 3440 758 169 8 8 chr15 82979739 82979857 -18400664 + FLAM_A SINE Alu 2 120 -8 2248 66 7 23 chr15 82979857 82980162 -18400359 - AluSq SINE Alu -13 300 1 2041 83 7 0 chr15 82980244 82980552 -18399969 - AluSc SINE Alu 0 310 1 750 199 4 91 chr15 82980552 82980783 -18399738 - L1MEc LINE L1 -3785 2430 2220 460 111 0 0 chr15 82980783 82980846 -18399675 - AluS SINE Alu -18 294 232 1079 87 0 0 chr15 82980875 82981013 -18399508 + AluSp/q SINE Alu 156 293 -20 346 201 7 47 chr15 82981022 82981033 -18399488 - L1MEc LINE L1 -5199 1197 1187 749 161 0 25 chr15 82981033 82981151 -18399370 - FLAM_A SINE Alu -18 115 1 346 201 7 47 chr15 82981151 82981288 -18399233 - L1MEc LINE L1 -5209 1187 1055 180 111 0 0 chr15 82981501 82981528 -18398993 + (CGG)n Simple_repeat Simple_repeat 1 27 0 * 249 139 0 0 chr15 82981526 82981569 -18398952 + (CGGGG)n Simple_repeat Simple_repeat 1 43 0 22 0 0 0 chr15 82981597 82981619 -18398902 + GC_rich Low_complexity Low_complexity 1 22 0 465 219 0 19 chr15 82982502 82982607 -18397914 + FLAM_A SINE Alu 34 136 -6 1954 140 0 9 chr15 82982612 82982789 -18397732 - AluSq SINE Alu -1 312 138 2307 90 3 0 chr15 82982789 82983101 -18397420 - AluSq SINE Alu 0 313 1 1954 140 0 9 chr15 82983101 82983238 -18397283 - AluSq SINE Alu -175 138 1 22 0 0 0 chr15 82983775 82983797 -18396724 + AT_rich Low_complexity Low_complexity 1 22 0 1873 123 46 0 chr15 82984127 82984412 -18396109 + AluSx SINE Alu 1 298 -14 255 313 37 43 chr15 82984489 82984652 -18395869 - L2 LINE L2 -294 2978 2817 739 256 47 14 chr15 82985060 82985134 -18395387 + MER112 DNA MER1_type 12 82 -178 333 0 0 0 chr15 82985134 82985171 -18395350 + (CA)n Simple_repeat Simple_repeat 1 37 0 739 256 47 14 chr15 82985171 82985311 -18395210 + MER112 DNA MER1_type 82 233 -27 832 139 14 14 chr15 82985864 82986008 -18394513 + BC200 scRNA scRNA 2 145 -55 851 153 86 55 chr15 82986480 82986643 -18393878 - AluJb SINE Alu -10 302 135 268 202 60 107 chr15 82987192 82987276 -18393245 - L2 LINE L2 0 3313 3234 2115 104 3 25 chr15 82987594 82987910 -18392611 + AluSx SINE Alu 1 309 -3 286 190 101 25 chr15 82988093 82988172 -18392349 + L1MB7 LINE L1 6096 6180 -4 818 246 15 5 chr15 82988184 82988387 -18392134 - LTR33 LTR ERVL 0 521 317 498 309 35 10 chr15 82988415 82988616 -18391905 - LTR33 LTR ERVL -313 208 3 357 213 25 0 chr15 82988949 82989029 -18391492 - L2 LINE L2 -3 3310 3229 956 163 118 0 chr15 82989040 82989155 -18391366 + AluJo SINE Alu 1 101 -211 212 0 36 0 chr15 82989155 82989183 -18391338 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 956 163 118 0 chr15 82989183 82989270 -18391251 + AluJo SINE Alu 101 227 -85 234 0 0 0 chr15 82989357 82989383 -18391138 + (TG)n Simple_repeat Simple_repeat 2 27 0 1521 142 3 123 chr15 82989392 82989716 -18390805 - AluJo SINE Alu -16 286 2 34 34 0 17 chr15 82989716 82989759 -18390762 + AT_rich Low_complexity Low_complexity 1 44 -14 2130 102 3 16 chr15 82989759 82990073 -18390448 + AluSp SINE Alu 1 310 -3 34 34 0 17 chr15 82990073 82990088 -18390433 + AT_rich Low_complexity Low_complexity 44 58 0 1969 113 35 0 chr15 82990103 82990387 -18390134 + AluSx SINE Alu 6 299 -13 646 213 0 31 chr15 82990394 82990521 -18390000 + FLAM_A SINE Alu 4 126 -7 300 137 0 0 chr15 82990650 82990701 -18389820 + (CA)n Simple_repeat Simple_repeat 2 52 0 663 265 158 45 chr15 82991039 82991394 -18389127 + LTR16C LTR ERVL 97 491 0 225 291 25 65 chr15 82991410 82991498 -18389023 - L1ME LINE L1 -419 5751 5661 2682 23 0 0 chr15 82991498 82991804 -18388717 - AluY SINE Alu -5 306 1 225 291 25 65 chr15 82991804 82991914 -18388607 - L1ME LINE L1 -509 5661 5561 834 269 8 5 chr15 82991950 82992218 -18388303 - L1M2 LINE L1 -612 5558 5293 426 319 36 0 chr15 82992475 82992613 -18387908 + L2 LINE L2 3125 3267 -5 24 77 0 0 chr15 82992818 82992870 -18387651 + AT_rich Low_complexity Low_complexity 1 52 0 1766 159 0 0 chr15 82992870 82993174 -18387347 - AluSx SINE Alu 0 309 6 237 144 52 46 chr15 82993324 82993576 -18386945 + AluJb SINE Alu 1 300 -2 2162 111 10 0 chr15 82993696 82993994 -18386527 - AluSc SINE Alu -8 301 1 292 219 14 55 chr15 82994039 82994112 -18386409 - L2 LINE L2 0 3313 3244 391 278 191 0 chr15 82994139 82994301 -18386220 + MIR SINE MIR 1 193 -69 1780 156 24 0 chr15 82994882 82995177 -18385344 + AluJb SINE Alu 1 302 -10 2034 115 3 7 chr15 82995182 82995478 -18385043 + AluSx SINE Alu 1 295 -17 964 70 13 19 chr15 82995733 82995891 -18384630 + (TTC)n Simple_repeat Simple_repeat 3 159 0 842 143 21 0 chr15 82995958 82996086 -18384435 + AluSq/x SINE Alu 1 134 -178 216 0 0 0 chr15 82996086 82996110 -18384411 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 842 143 21 0 chr15 82996110 82996121 -18384400 + AluSq/x SINE Alu 134 143 -169 368 103 0 0 chr15 82996121 82996179 -18384342 + Alu SINE Alu 243 300 -2 693 208 0 0 chr15 82996253 82996373 -18384148 - MIR SINE MIR -111 151 32 2010 133 0 7 chr15 82996578 82996887 -18383634 - AluSx SINE Alu -5 307 1 1804 153 0 13 chr15 82996889 82997189 -18383332 - AluJo SINE Alu -16 296 1 1770 138 0 37 chr15 82997266 82997562 -18382959 + AluSq SINE Alu 1 285 -28 1158 130 6 0 chr15 82997584 82997761 -18382760 + AluSq SINE Alu 129 306 -7 2493 61 0 0 chr15 82998126 82998436 -18382085 + AluY SINE Alu 1 310 -1 1972 131 3 3 chr15 82998866 82999163 -18381358 + AluSx SINE Alu 1 297 -15 1825 106 73 0 chr15 82999165 82999438 -18381083 + AluSp SINE Alu 1 293 -20 212 0 0 35 chr15 82999438 82999467 -18381054 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 1518 170 65 4 chr15 82999472 82999749 -18380772 + AluJb SINE Alu 1 294 -18 650 181 163 31 chr15 82999758 82999918 -18380603 + FRAM SINE Alu 1 176 0 1371 114 13 0 chr15 82999967 83000275 -18380246 + L1P5 LINE L1 5166 5476 -680 1026 165 11 16 chr15 83000275 83000457 -18380064 + AluJo SINE Alu 1 181 -131 1313 205 7 44 chr15 83000457 83000754 -18379767 + L1PA16 LINE L1 5866 6151 -15 693 202 0 0 chr15 83000905 83001024 -18379497 + FLAM_C SINE Alu 2 120 -13 1523 157 72 142 chr15 83001033 83001224 -18379297 + MLT2A2 LTR ERVL 1 204 -350 1971 122 7 3 chr15 83001224 83001518 -18379003 + AluSg SINE Alu 1 295 -15 1523 157 72 142 chr15 83001518 83001826 -18378695 + MLT2A2 LTR ERVL 204 470 -84 2006 138 3 0 chr15 83001826 83002123 -18378398 - AluSq SINE Alu -15 298 1 1523 157 72 142 chr15 83002123 83002203 -18378318 + MLT2A2 LTR ERVL 470 554 0 845 153 25 37 chr15 83002203 83002366 -18378155 + FRAM SINE Alu 2 162 -14 722 196 6 15 chr15 83002399 83002570 -18377951 - MER33 DNA MER1_type -240 84 1 227 208 0 21 chr15 83002581 83002629 -18377892 + CT-rich Low_complexity Low_complexity 2 48 0 2046 119 10 0 chr15 83002752 83003055 -18377466 - AluSx SINE Alu -6 306 1 1865 146 3 0 chr15 83003058 83003352 -18377169 - AluJb SINE Alu -17 295 1 1998 96 0 7 chr15 83003380 83003661 -18376860 + AluSc SINE Alu 1 279 -30 180 0 0 0 chr15 83003664 83003684 -18376837 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1904 104 57 4 chr15 83003725 83004005 -18376516 + AluSc SINE Alu 1 295 -14 352 123 0 0 chr15 83004082 83004139 -18376382 - Alu SINE Alu -1 301 245 853 129 7 21 chr15 83004143 83004283 -18376238 - AluJo SINE Alu -174 138 1 270 325 106 94 chr15 83004299 83004705 -18375816 - L2 LINE L2 -16 3256 2846 2308 62 3 0 chr15 83004981 83005270 -18375251 + AluY SINE Alu 1 290 -21 2350 76 0 3 chr15 83005278 83005581 -18374940 + AluSx SINE Alu 1 302 -10 2141 81 17 7 chr15 83005605 83005900 -18374621 + AluSq SINE Alu 1 298 -15 1900 167 0 0 chr15 83005919 83006231 -18374290 + AluJo SINE Alu 1 312 0 247 352 9 19 chr15 83006237 83006345 -18374176 - L2 LINE L2 -180 3092 2986 257 130 65 0 chr15 83006369 83006415 -18374106 - MIR SINE MIR -1 261 213 2099 116 0 29 chr15 83006424 83006735 -18373786 - AluSg SINE Alu -5 305 4 765 213 0 25 chr15 83006743 83006903 -18373618 - FRAM SINE Alu -21 155 1 1901 154 3 0 chr15 83006936 83007235 -18373286 - AluJb SINE Alu -10 302 3 429 285 151 29 chr15 83007235 83007407 -18373114 - MIR SINE MIR -65 197 5 1832 125 0 4 chr15 83007501 83007765 -18372756 + AluSx SINE Alu 2 264 -48 1657 108 50 19 chr15 83008791 83008913 -18371608 + AluSp SINE Alu 1 118 -195 238 31 31 0 chr15 83008913 83008945 -18371576 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1657 108 50 19 chr15 83008945 83009080 -18371441 + AluSp SINE Alu 118 266 -47 261 269 74 101 chr15 83009233 83009288 -18371233 - MIR SINE MIR 0 262 207 1634 181 0 7 chr15 83009288 83009607 -18370914 - AluJb SINE Alu 0 317 1 261 269 74 101 chr15 83009607 83009699 -18370822 - MIR SINE MIR -55 207 118 803 149 7 58 chr15 83009718 83009872 -18370649 + FRAM SINE Alu 1 145 -31 22 0 0 0 chr15 83009880 83009902 -18370619 + AT_rich Low_complexity Low_complexity 1 22 0 245 258 144 31 chr15 83009906 83010003 -18370518 - MIR SINE MIR -148 114 7 2102 109 10 0 chr15 83010316 83010609 -18369912 - AluSx SINE Alu -16 296 1 826 150 15 0 chr15 83010609 83010742 -18369779 - AluJo SINE Alu -176 136 2 531 227 45 0 chr15 83010969 83011079 -18369442 - L2 LINE L2 -3 3310 3196 198 0 0 0 chr15 83011186 83011208 -18369313 + (CA)n Simple_repeat Simple_repeat 2 23 0 278 289 40 0 chr15 83011214 83011290 -18369231 - L2 LINE L2 -8 3305 3227 3387 122 79 69 chr15 83011314 83011866 -18368655 - L1MB8 LINE L1 -5 6173 5611 2106 109 0 0 chr15 83011866 83012160 -18368361 - AluSx SINE Alu -10 302 9 3387 122 79 69 chr15 83012160 83012313 -18368208 - L1MB8 LINE L1 -567 5611 5461 413 194 31 10 chr15 83012317 83012415 -18368106 - L1MD3 LINE L1 -4 7991 7892 222 118 0 0 chr15 83012434 83012468 -18368053 + (A)n Simple_repeat Simple_repeat 1 34 0 2107 93 33 0 chr15 83012839 83013141 -18367380 + AluSx SINE Alu 1 312 0 204 40 0 0 chr15 83013164 83013189 -18367332 + (CAAG)n Simple_repeat Simple_repeat 2 26 0 233 180 40 0 chr15 83013194 83013244 -18367277 + (CAGAGA)n Simple_repeat Simple_repeat 6 57 0 190 270 169 0 chr15 83015082 83015171 -18365350 - MIR SINE MIR -42 220 117 873 230 176 0 chr15 83015182 83015307 -18365214 + MIR SINE MIR 2 104 -158 441 190 0 10 chr15 83015307 83015407 -18365114 - L1MB4 LINE L1 -2 6178 6080 873 230 176 0 chr15 83015407 83015485 -18365036 + MIR SINE MIR 104 241 -21 203 315 54 22 chr15 83015512 83015547 -18364974 - MIR SINE MIR -148 114 82 2192 94 20 0 chr15 83015547 83015845 -18364676 + AluSc SINE Alu 1 304 -5 203 315 54 22 chr15 83015845 83015901 -18364620 - MIR SINE MIR -180 82 20 296 273 33 33 chr15 83016595 83016651 -18363870 - L1ME1 LINE L1 -11 6155 6100 2209 74 42 0 chr15 83016651 83016936 -18363585 - AluY SINE Alu -14 297 1 296 273 33 33 chr15 83016936 83017000 -18363521 - L1ME1 LINE L1 -65 6101 6035 248 176 40 0 chr15 83017020 83017102 -18363419 - L1ME3A LINE L1 -202 5976 5888 2307 90 7 0 chr15 83017115 83017425 -18363096 + AluSx SINE Alu 1 312 0 928 146 30 6 chr15 83017425 83017590 -18362931 - L1ME3A LINE L1 -723 5610 5442 1764 168 0 7 chr15 83017606 83017903 -18362618 - AluJo SINE Alu -17 295 1 338 108 315 92 chr15 83018029 83018057 -18362464 + MER63 DNA MER1_type 904 924 -138 1591 108 156 22 chr15 83018057 83018326 -18362195 - AluSx SINE Alu -7 305 1 338 108 315 92 chr15 83018326 83018427 -18362094 + MER63 DNA MER1_type 924 1062 0 1630 167 3 19 chr15 83018448 83018765 -18361756 - AluJb SINE Alu 0 312 1 1745 117 12 0 chr15 83018777 83019034 -18361487 - AluY SINE Alu -15 296 37 2036 112 0 14 chr15 83019214 83019510 -18361011 - AluSx SINE Alu -20 292 1 34 24 0 0 chr15 83019561 83019602 -18360919 + AT_rich Low_complexity Low_complexity 1 41 0 1762 150 32 0 chr15 83019828 83020108 -18360413 + AluSx SINE Alu 1 289 -23 2164 114 0 13 chr15 83020119 83020434 -18360087 + AluSx SINE Alu 1 311 -1 780 144 15 15 chr15 83020533 83020665 -18359856 + FLAM_A SINE Alu 1 132 -1 1149 167 0 89 chr15 83021044 83021290 -18359231 - AluJb SINE Alu 0 312 89 2140 104 16 10 chr15 83021627 83021936 -18358585 - AluSx SINE Alu -1 311 1 1160 246 32 36 chr15 83022298 83022378 -18358143 - MLT2E LTR ERVL -2 626 547 2388 76 0 0 chr15 83022378 83022680 -18357841 + AluSc SINE Alu 1 302 -7 1160 246 32 36 chr15 83022680 83022908 -18357613 - MLT2E LTR ERVL -81 547 319 977 214 36 0 chr15 83022921 83023117 -18357404 - MLT2E LTR ERVL -416 212 10 308 233 27 0 chr15 83023128 83023201 -18357320 - Ricksha DNA DNA -1702 344 270 295 250 110 10 chr15 83023201 83023228 -18357293 - ERVL-E LTR ERVL -9 5755 5646 953 232 96 15 chr15 83023383 83023655 -18356866 - ERVL-E LTR ERVL -585 5179 4886 1807 132 30 3 chr15 83023655 83023951 -18356570 + AluSq SINE Alu 1 304 -9 872 219 25 0 chr15 83024125 83024326 -18356195 - L1MA10 LINE L1 -1 6333 6128 588 182 212 0 chr15 83024336 83024468 -18356053 - AluJb SINE Alu -151 161 2 2068 132 3 0 chr15 83024497 83024808 -18355713 - AluSx SINE Alu 0 312 1 332 167 0 0 chr15 83024813 83024867 -18355654 - MER5B DNA MER1_type -124 54 1 1771 161 0 34 chr15 83026243 83026385 -18354136 + AluJo SINE Alu 1 146 -166 2127 92 3 0 chr15 83026385 83026691 -18353830 + AluSx SINE Alu 1 307 0 1771 161 0 34 chr15 83026691 83026870 -18353651 + AluJo SINE Alu 146 312 0 2100 117 7 0 chr15 83026927 83027226 -18353295 - AluSx SINE Alu -9 303 3 2174 117 3 0 chr15 83027455 83027763 -18352758 + AluSx SINE Alu 1 309 -3 1715 159 0 49 chr15 83027983 83028310 -18352211 + AluJb SINE Alu 1 311 -1 21 0 0 0 chr15 83028388 83028409 -18352112 + AT_rich Low_complexity Low_complexity 1 21 0 2130 117 3 0 chr15 83028599 83028907 -18351614 - AluSx SINE Alu -3 309 1 2685 94 14 3 chr15 83028999 83029359 -18351162 - THE1B LTR MaLR 0 364 1 1817 85 123 11 chr15 83029735 83029995 -18350526 + AluSg SINE Alu 4 292 -18 375 41 0 0 chr15 83030123 83030172 -18350349 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 2253 85 0 7 chr15 83030808 83031122 -18349399 + AluSg SINE Alu 1 312 0 317 238 52 50 chr15 83031375 83031488 -18349033 - L1MC5 LINE L1 -76 7885 7774 1479 163 83 25 chr15 83031488 83031764 -18348757 - AluJb SINE Alu -20 292 1 317 238 52 50 chr15 83031764 83031906 -18348615 - L1MC5 LINE L1 -187 7774 7634 2464 79 0 0 chr15 83031906 83032209 -18348312 - AluSx SINE Alu -9 303 1 317 238 52 50 chr15 83032209 83032382 -18348139 - L1MC5 LINE L1 -327 7634 7341 326 233 142 0 chr15 83032390 83032510 -18348011 - L1ME4a LINE L1 -187 5934 5798 1569 83 0 5 chr15 83033230 83033434 -18347087 - AluSg/x SINE Alu -4 308 106 535 218 138 23 chr15 83033686 83033860 -18346661 - MIR SINE MIR 0 262 69 1954 160 7 7 chr15 83034540 83034846 -18345675 - AluSx SINE Alu -6 306 1 677 240 102 39 chr15 83035026 83035280 -18345241 - L1ME4a LINE L1 -319 5802 5533 1788 159 0 66 chr15 83035309 83035643 -18344878 - AluSx SINE Alu 0 312 1 2460 83 0 3 chr15 83035784 83036096 -18344425 + AluY SINE Alu 1 311 0 1858 170 3 0 chr15 83036453 83036747 -18343774 - AluJo SINE Alu -17 295 1 2080 107 3 42 chr15 83036757 83037065 -18343456 - AluSq SINE Alu -17 296 1 1347 119 74 5 chr15 83037092 83037294 -18343227 - AluSq SINE Alu -17 296 81 2094 149 6 22 chr15 83037364 83037719 -18342802 - L1MB7 LINE L1 -2 6182 5834 1939 164 0 3 chr15 83038697 83038990 -18341531 + AluJo SINE Alu 1 292 -20 34 0 0 0 chr15 83039318 83039352 -18341169 + AT_rich Low_complexity Low_complexity 1 34 0 253 235 15 44 chr15 83039550 83039618 -18340903 - MER5A DNA MER1_type -64 125 60 2376 104 0 0 chr15 83039622 83039929 -18340592 - AluSc SINE Alu -2 307 1 6160 58 26 8 chr15 83040126 83041313 -18339208 - SVA Other Other -518 1047 6 459 296 14 28 chr15 83041770 83041912 -18338609 - L2 LINE L2 0 3272 3133 265 254 159 38 chr15 83042485 83042658 -18337863 + MIR SINE MIR 23 206 -56 1003 74 0 15 chr15 83042877 83043012 -18337509 + FLAM_C SINE Alu 1 133 0 1908 120 71 7 chr15 83043020 83043303 -18337218 + AluSx SINE Alu 3 303 -9 339 25 0 0 chr15 83044173 83044213 -18336308 + (TG)n Simple_repeat Simple_repeat 1 40 0 2073 117 45 0 chr15 83046330 83046620 -18333901 + AluSx SINE Alu 1 303 -9 419 184 0 35 chr15 83047910 83047997 -18332524 - L2 LINE L2 -2 3270 3187 21 36 0 0 chr15 83048094 83048122 -18332399 + AT_rich Low_complexity Low_complexity 1 28 0 232 288 29 50 chr15 83048246 83048385 -18332136 + L2 LINE L2 3100 3235 -37 2236 128 0 0 chr15 83048513 83048825 -18331696 + AluSx SINE Alu 1 312 0 2131 125 0 7 chr15 83049490 83049786 -18330735 - AluSq SINE Alu -15 298 5 2167 101 26 3 chr15 83049801 83050107 -18330414 - AluSq SINE Alu 0 313 1 240 314 108 49 chr15 83050530 83050715 -18329806 - MIR SINE MIR -16 246 51 848 145 0 14 chr15 83051202 83051340 -18329181 + AluJb SINE Alu 177 312 0 1432 79 12 106 chr15 83051627 83051685 -18328836 - MER30 DNA MER1_type 0 230 168 2358 96 0 3 chr15 83051685 83051997 -18328524 - AluY SINE Alu 0 311 1 1432 79 12 106 chr15 83051997 83052192 -18328329 - MER30 DNA MER1_type -62 168 1 2063 137 3 3 chr15 83052248 83052561 -18327960 - AluSq SINE Alu 0 313 1 1077 146 59 36 chr15 83054728 83054947 -18325574 + AluJb SINE Alu 87 310 -2 314 263 70 0 chr15 83055682 83055796 -18324725 - MIR SINE MIR -63 145 24 948 204 11 21 chr15 83056902 83057093 -18323428 - MER20 DNA MER1_type -1 218 30 504 280 119 10 chr15 83057313 83057506 -18323015 + MIR SINE MIR 48 261 -1 227 220 68 0 chr15 83058566 83058625 -18321896 - L2 LINE L2 -3 3269 3207 922 139 33 11 chr15 83058808 83058988 -18321533 + MER53 DNA DNA 1 184 -5 194 312 60 41 chr15 83059553 83059771 -18320750 - MIR SINE MIR -26 236 15 1351 75 0 0 chr15 83060075 83060236 -18320285 + AluSx SINE Alu 1 161 -151 2123 96 4 14 chr15 83060343 83060624 -18319897 - AluSp SINE Alu -35 278 1 1965 168 0 0 chr15 83060701 83061010 -18319511 - AluSg SINE Alu 0 310 2 2295 193 36 6 chr15 83061010 83061497 -18319024 - L1MEc LINE L1 -5469 927 426 793 134 0 15 chr15 83061547 83061681 -18318840 - FLAM_C SINE Alu 0 133 2 1082 209 25 47 chr15 83061682 83061960 -18318561 - L1MEc LINE L1 -6080 316 45 2170 123 0 19 chr15 83061974 83062292 -18318229 - AluSx SINE Alu 0 312 1 488 170 60 0 chr15 83062297 83062397 -18318124 - L1ME1 LINE L1 -296 5870 5765 777 113 70 49 chr15 83062397 83062539 -18317982 - MER46A DNA MER2_type 0 236 92 366 186 118 29 chr15 83062543 83062645 -18317876 - L1ME1 LINE L1 -405 5761 5651 21 36 0 0 chr15 83063140 83063168 -18317353 + AT_rich Low_complexity Low_complexity 1 28 0 1240 185 5 9 chr15 83064040 83064262 -18316259 - AluJo SINE Alu -7 305 85 904 136 0 8 chr15 83064290 83064422 -18316099 - FLAM_C SINE Alu 0 133 3 868 227 48 5 chr15 83064565 83064772 -18315749 + MER46C DNA MER2_type 122 337 -1 340 305 16 23 chr15 83065048 83065176 -18315345 + MIR3 SINE MIR 34 160 -48 313 0 0 0 chr15 83065539 83065573 -18314948 + U2 snRNA snRNA 1 34 -154 1011 168 6 6 chr15 83065684 83065842 -18314679 - AluJo SINE Alu -20 292 132 2316 86 7 3 chr15 83065842 83066143 -18314378 - AluSp SINE Alu -11 302 1 1011 168 6 6 chr15 83066143 83066157 -18314364 - AluJo SINE Alu -179 133 120 2465 78 10 3 chr15 83066206 83066512 -18314009 - AluSg SINE Alu -2 308 1 722 148 78 8 chr15 83066512 83066640 -18313881 - FLAM_C SINE Alu -5 138 2 230 222 42 0 chr15 83066687 83066759 -18313762 + HAL1 LINE L1 2313 2387 -120 2120 139 7 0 chr15 83066940 83067249 -18313272 - AluSx SINE Alu -1 311 1 627 240 30 91 chr15 83067271 83067561 -18312960 - L1MC4 LINE L1 -6 8036 7771 2164 146 0 9 chr15 83067561 83067876 -18312645 + AluSx SINE Alu 1 312 0 627 240 30 91 chr15 83067876 83067947 -18312574 - L1MC4 LINE L1 -271 7771 7697 454 198 40 40 chr15 83068052 83068178 -18312343 - L1MC4 LINE L1 -391 7651 7526 1648 146 91 0 chr15 83068200 83068454 -18312067 + AluJo SINE Alu 1 277 -35 244 342 60 0 chr15 83068819 83068936 -18311585 + MIR3 SINE MIR 38 161 -47 2205 119 0 25 chr15 83068991 83069310 -18311211 + AluSx SINE Alu 1 311 -1 2073 147 3 3 chr15 83069949 83070261 -18310260 + AluJb SINE Alu 1 312 0 821 208 0 0 chr15 83070697 83070851 -18309670 - AluJ SINE Alu -11 291 138 2244 114 76 15 chr15 83070880 83071223 -18309298 - THE1B LTR MaLR 0 364 1 724 167 9 0 chr15 83071223 83071336 -18309185 - FLAM_C SINE Alu -18 115 1 2371 109 6 0 chr15 83071415 83071726 -18308795 + AluSq SINE Alu 1 313 0 888 219 25 0 chr15 83071891 83072092 -18308429 - L1MA10 LINE L1 -1 6333 6128 584 182 212 0 chr15 83072102 83072234 -18308287 - AluJ SINE Alu -151 161 2 2047 151 3 0 chr15 83072263 83072574 -18307947 - AluSx SINE Alu 0 312 1 287 140 0 35 chr15 83072577 83072634 -18307887 + MER5B DNA MER1_type 124 178 0 829 164 0 15 chr15 83074010 83074144 -18306377 + FLAM_C SINE Alu 1 132 -1 2288 120 3 0 chr15 83074152 83074460 -18306061 + AluSx SINE Alu 1 309 -3 244 328 0 0 chr15 83075116 83075183 -18305338 - L2 LINE L2 -1 3271 3205 388 319 23 87 chr15 83075310 83075630 -18304891 - L2 LINE L2 -1067 2247 1959 2383 80 7 0 chr15 83075630 83075919 -18304602 + AluSg SINE Alu 1 291 -19 388 319 23 87 chr15 83075919 83076025 -18304496 - L2 LINE L2 -1355 1959 1848 1974 139 0 7 chr15 83076359 83076653 -18303868 - AluJb SINE Alu -20 292 1 1788 129 72 4 chr15 83076671 83076949 -18303572 - AluJo SINE Alu -15 297 1 1752 139 0 53 chr15 83076997 83077138 -18303383 + AluSx SINE Alu 3 121 -191 2323 99 7 0 chr15 83077138 83077441 -18303080 + AluSg SINE Alu 1 305 -5 1752 139 0 53 chr15 83077441 83077602 -18302919 + AluSx SINE Alu 121 289 -23 698 184 24 0 chr15 83077892 83078017 -18302504 + FLAM_C SINE Alu 6 133 -10 2298 114 0 10 chr15 83078026 83078334 -18302187 + AluSx SINE Alu 1 305 -7 691 268 96 8 chr15 83078551 83078790 -18301731 + MIR SINE MIR 1 260 -2 216 100 0 25 chr15 83079683 83079723 -18300798 + MIR3 SINE MIR 127 165 -43 2024 127 10 3 chr15 83080001 83080293 -18300228 + AluSq SINE Alu 1 294 -19 2114 140 7 7 chr15 83080603 83080911 -18299610 + AluSx SINE Alu 1 308 -4 236 276 66 0 chr15 83081701 83081777 -18298744 - L2 LINE L2 -49 3264 3184 1847 63 9 0 chr15 83082634 83082855 -18297666 + AluY SINE Alu 89 311 0 2347 86 3 3 chr15 83082919 83083220 -18297301 + AluSc SINE Alu 1 301 -8 187 283 189 65 chr15 83083305 83083627 -18296894 - L2 LINE L2 -1648 1666 1305 * 327 212 206 62 chr15 83083609 83083755 -18296766 + MIR SINE MIR 91 257 -5 767 127 8 25 chr15 83083899 83084017 -18296504 + AluSq/x SINE Alu 21 136 -176 556 227 98 17 chr15 83084345 83084524 -18295997 + MIR SINE MIR 7 202 -60 913 152 0 0 chr15 83084877 83085009 -18295512 + AluJo/FLAM SINE Alu 2 133 -169 1711 188 7 0 chr15 83085012 83085289 -18295232 + AluJb SINE Alu 1 279 -33 2268 114 0 3 chr15 83085411 83085717 -18294804 - AluSc SINE Alu -4 305 1 832 157 8 22 chr15 83085777 83085911 -18294610 + FLAM_C SINE Alu 1 132 -1 2202 122 0 16 chr15 83085958 83086269 -18294252 + AluSx SINE Alu 1 306 -6 375 300 0 8 chr15 83086878 83086998 -18293523 - MIR SINE MIR -78 184 66 29 28 0 0 chr15 83087040 83087076 -18293445 + AT_rich Low_complexity Low_complexity 1 36 0 1119 106 0 0 chr15 83087080 83087231 -18293290 - FRAM SINE Alu -29 147 1 330 18 0 54 chr15 83088620 83088676 -18291845 + L1PB1 LINE L1 5988 6040 -111 2192 112 0 41 chr15 83088709 83089023 -18291498 + AluSx SINE Alu 8 308 -4 715 85 7 106 chr15 83089023 83089164 -18291357 + L1PB1 LINE L1 6022 6148 -3 243 320 0 87 chr15 83089615 83089718 -18290803 - MIR SINE MIR -106 102 9 1274 74 0 0 chr15 83090041 83090204 -18290317 + L1PA7 LINE L1 5991 6153 -1 2645 56 0 0 chr15 83090585 83090887 -18289634 - AluY SINE Alu -9 302 1 1941 140 3 50 chr15 83090981 83091303 -18289218 - AluJb SINE Alu -5 307 1 1425 129 29 9 chr15 83092163 83092373 -18288148 + AluSg/x SINE Alu 83 296 -14 25 75 0 0 chr15 83093519 83093572 -18286949 + GC_rich Low_complexity Low_complexity 1 53 0 2442 85 0 0 chr15 83094610 83094915 -18285606 + AluSg SINE Alu 1 305 -5 2118 86 3 42 chr15 83096607 83096945 -18283576 - AluSg1 SINE Alu 0 309 1 557 151 217 0 chr15 83096945 83097051 -18283470 - FLAM_C SINE Alu -9 134 6 2079 97 42 7 chr15 83097604 83097892 -18282629 + AluSx SINE Alu 6 303 -9 424 132 26 0 chr15 83098208 83098284 -18282237 - MER4B-int LTR ERV1 -6443 315 238 963 96 43 53 chr15 83098326 83098514 -18282007 - MER4B-int LTR ERV1 -6473 285 100 1328 148 18 5 chr15 83098515 83098781 -18281740 - AluJb SINE Alu 0 327 59 620 196 0 0 chr15 83098785 83098892 -18281629 - MER4B-int LTR ERV1 -6651 107 1 2052 136 0 10 chr15 83098934 83099235 -18281286 - AluSx SINE Alu -14 298 1 577 238 81 17 chr15 83099342 83099514 -18281007 + MIR SINE MIR 79 261 -1 525 191 81 58 chr15 83099711 83099782 -18280739 + L1ME3A LINE L1 5968 6036 -134 2120 135 20 0 chr15 83099782 83100079 -18280442 - AluSx SINE Alu -9 303 1 525 191 81 58 chr15 83100079 83100180 -18280341 + L1ME3A LINE L1 6036 6144 -26 2192 120 0 0 chr15 83100197 83100488 -18280033 - AluSx SINE Alu -21 291 1 1276 180 121 29 chr15 83100626 83100898 -18279623 + AluJo SINE Alu 2 298 -4 2243 105 3 10 chr15 83101161 83101457 -18279064 - AluSq SINE Alu -17 296 3 216 263 109 55 chr15 83101621 83101914 -18278607 - L2 LINE L2 -126 3146 2838 702 121 40 24 chr15 83102138 83102262 -18278259 + AluSg/x SINE Alu 176 301 -9 382 117 0 13 chr15 83102654 83102728 -18277793 + AluSp SINE Alu 144 194 -109 1959 140 7 7 chr15 83103397 83103704 -18276817 - AluSx SINE Alu 0 312 6 2495 58 7 0 chr15 83103730 83104021 -18276500 - AluY SINE Alu -18 293 1 2415 72 0 16 chr15 83104386 83104692 -18275829 + AluY SINE Alu 1 301 -10 224 280 110 42 chr15 83105424 83105542 -18274979 - MIR SINE MIR -60 148 23 3765 88 25 4 chr15 83107323 83107843 -18272678 + L1PA11 LINE L1 5644 6174 0 2564 37 10 0 chr15 83108332 83108626 -18271895 - AluY SINE Alu -14 297 1 356 146 0 49 chr15 83109060 83109142 -18271379 + AluSg/x SINE Alu 219 296 -4 2269 105 0 0 chr15 83109271 83109565 -18270956 - AluSx SINE Alu -15 297 4 1827 188 0 10 chr15 83109740 83110049 -18270472 - AluJb SINE Alu -6 306 1 2267 87 17 0 chr15 83110262 83110550 -18269971 - AluSx SINE Alu -19 293 1 2203 129 3 0 chr15 83110561 83110863 -18269658 - AluSp SINE Alu -10 303 1 2081 120 0 10 chr15 83111448 83111739 -18268782 - AluSx SINE Alu -11 301 14 1775 191 3 0 chr15 83112074 83112377 -18268144 + AluJo SINE Alu 1 304 -8 2274 101 0 7 chr15 83112450 83112746 -18267775 + AluSg SINE Alu 1 294 -16 1034 127 67 0 chr15 83112919 83113069 -18267452 + AluSg/x SINE Alu 136 295 -17 349 268 48 48 chr15 83113159 83113387 -18267134 + HAL1b LINE L1 695 922 -426 1871 169 0 3 chr15 83113432 83113722 -18266799 + AluJo SINE Alu 21 309 -3 2188 118 0 23 chr15 83113724 83114029 -18266492 + AluSg SINE Alu 1 298 -12 2201 91 45 0 chr15 83114096 83114382 -18266139 + AluSx SINE Alu 1 299 -13 325 268 49 127 chr15 83114587 83114792 -18265729 + L1 LINE L1 4884 5072 -1074 2406 74 0 3 chr15 83114954 83115251 -18265270 - AluY SINE Alu -15 296 1 21 0 0 0 chr15 83115772 83115793 -18264728 + AT_rich Low_complexity Low_complexity 1 21 0 959 172 17 17 chr15 83115923 83115940 -18264581 - AluJb SINE Alu -1 311 295 2171 101 34 0 chr15 83115940 83116237 -18264284 - AluSx SINE Alu -5 307 1 959 172 17 17 chr15 83116237 83116399 -18264122 - AluJb SINE Alu -16 296 132 2001 90 61 18 chr15 83116412 83116691 -18263830 - AluSg SINE Alu -19 291 1 348 270 132 48 chr15 83116692 83116881 -18263640 - L1 LINE L1 -750 5396 5192 2342 100 7 0 chr15 83116916 83117226 -18263295 + AluSx SINE Alu 1 312 0 225 214 18 0 chr15 83117410 83117466 -18263055 - L1P LINE L1 -1140 5006 4950 792 224 0 7 chr15 83118215 83118362 -18262159 + FRAM SINE Alu 1 146 -30 290 58 0 81 chr15 83118368 83118454 -18262067 + (TA)n Simple_repeat Simple_repeat 2 80 0 465 234 195 7 chr15 83118738 83118892 -18261629 - MER5A DNA MER1_type -1 188 6 589 186 137 50 chr15 83118904 83119065 -18261456 + MER5B DNA MER1_type 1 175 -3 375 215 122 37 chr15 83119086 83119147 -18261374 - MER5A DNA MER1_type 0 189 135 2374 94 7 10 chr15 83119147 83119454 -18261067 - AluSx SINE Alu -6 306 1 375 215 122 37 chr15 83119454 83119499 -18261022 - MER5A DNA MER1_type -54 135 74 211 185 0 31 chr15 83119513 83119578 -18260943 + GA-rich Low_complexity Low_complexity 6 68 0 188 300 155 57 chr15 83119870 83119893 -18260628 - L2 LINE L2 -368 2946 2927 2262 112 7 0 chr15 83119893 83120197 -18260324 + AluSx SINE Alu 1 306 -6 188 300 155 57 chr15 83120197 83120490 -18260031 - L2 LINE L2 -387 2927 2599 292 222 256 8 chr15 83121293 83121410 -18259111 + MIR SINE MIR 36 181 -81 271 351 35 0 chr15 83121766 83121880 -18258641 + MIR SINE MIR 141 258 -4 214 272 56 64 chr15 83122230 83122355 -18258166 + L2 LINE L2 2976 3099 -173 2398 110 0 0 chr15 83122665 83122975 -18257546 + AluSg SINE Alu 1 310 0 2034 88 99 0 chr15 83124059 83124332 -18256189 + AluSx SINE Alu 1 300 -12 2370 92 20 0 chr15 83124818 83125123 -18255398 + AluSx SINE Alu 1 311 -1 448 226 173 14 chr15 83125151 83125314 -18255207 + L1ME3 LINE L1 5972 6163 -1 2378 80 10 0 chr15 83125450 83125751 -18254770 + AluSp SINE Alu 1 304 -9 890 129 8 0 chr15 83125857 83125989 -18254532 + AluJo SINE Alu 3 135 -177 339 284 43 0 chr15 83126204 83126320 -18254201 + MIR3 SINE MIR 59 179 -29 294 343 10 10 chr15 83126949 83127048 -18253473 + MIR3 SINE MIR 85 183 -25 261 128 0 0 chr15 83127385 83127432 -18253089 + (TA)n Simple_repeat Simple_repeat 2 48 0 869 131 0 0 chr15 83127459 83127581 -18252940 - FLAM_C SINE Alu -10 123 2 1685 101 139 8 chr15 83127870 83128128 -18252393 - AluSx SINE Alu -20 292 1 314 254 227 0 chr15 83128128 83128238 -18252283 - L1M4 LINE L1 -815 5331 5197 17046 121 42 12 chr15 83129659 83133153 -18247368 - L1M1 LINE L1 -3967 3598 13 524 246 27 0 chr15 83133153 83133263 -18247258 - MLT1A2 LTR MaLR -261 113 1 1361 240 51 75 chr15 83134051 83134559 -18245962 - MER77 LTR ERV1 -56 549 54 223 275 0 14 chr15 83134785 83134854 -18245667 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 198 247 0 0 chr15 83134855 83134932 -18245589 + (TG)n Simple_repeat Simple_repeat 2 78 0 416 227 0 0 chr15 83134960 83135048 -18245473 + AluJo SINE Alu 130 217 -95 2252 95 16 3 chr15 83135201 83135505 -18245016 + AluSc SINE Alu 1 308 -1 646 255 115 20 chr15 83136056 83136256 -18244265 + MIR SINE MIR 1 219 -43 2394 96 0 0 chr15 83136614 83136916 -18243605 + AluSg SINE Alu 1 302 -8 1622 197 27 19 chr15 83136936 83137282 -18243239 + L1ME3 LINE L1 5794 6145 -17 1253 155 46 143 chr15 83137282 83137696 -18242825 - MLT1A2 LTR MaLR 0 374 1 1622 197 27 19 chr15 83137696 83137715 -18242806 + L1ME3 LINE L1 6145 6162 0 2224 107 0 7 chr15 83137765 83138056 -18242465 + AluSx SINE Alu 1 289 -23 2197 109 0 0 chr15 83138607 83138911 -18241610 + AluSx SINE Alu 1 304 -8 597 209 30 30 chr15 83139235 83139369 -18241152 - MER94 DNA DNA 0 134 1 186 211 19 58 chr15 83140067 83140119 -18240402 - MIR SINE MIR -141 67 18 402 257 1 49 chr15 83140826 83140948 -18239573 + MIR3 SINE MIR 41 158 -50 882 161 39 11 chr15 83141010 83141190 -18239331 - L1MA9 LINE L1 -5 6307 6123 1657 122 42 45 chr15 83141190 83141275 -18239246 + L1MA5 LINE L1 5965 6049 -251 1683 167 47 20 chr15 83141275 83141574 -18238947 + AluJo SINE Alu 1 307 -5 1657 122 42 45 chr15 83141574 83141820 -18238701 + L1MA5 LINE L1 6049 6298 -2 2154 124 0 7 chr15 83141828 83142135 -18238386 + AluSc SINE Alu 1 305 -4 2301 110 0 0 chr15 83142136 83142445 -18238076 + AluSg1 SINE Alu 1 309 0 502 154 58 2 chr15 83142449 83142549 -18237972 - L1MA8 LINE L1 -152 6148 6046 2816 259 55 51 chr15 83142633 83142764 -18237757 - HAL1 LINE L1 -36 2471 2342 2289 109 13 0 chr15 83142764 83143068 -18237453 - AluSp SINE Alu -3 310 3 2816 259 55 51 chr15 83143068 83144099 -18236422 - HAL1 LINE L1 -165 2342 1304 1297 206 64 67 chr15 83144614 83145003 -18235518 + MLT1B LTR MaLR 3 390 0 480 295 40 62 chr15 83145120 83145442 -18235079 + MLT1K LTR MaLR 268 582 -6 183 114 0 0 chr15 83145447 83145482 -18235039 + (CAGGG)n Simple_repeat Simple_repeat 4 38 0 1957 166 3 0 chr15 83146617 83146919 -18233602 + AluJb SINE Alu 1 303 -9 318 87 0 0 chr15 83146954 83147000 -18233521 + (GGGGA)n Simple_repeat Simple_repeat 5 50 0 289 226 45 97 chr15 83147491 83147646 -18232875 - MIR3 SINE MIR -7 201 55 283 167 0 0 chr15 83147739 83147787 -18232734 + L1ME LINE L1 5714 5761 -360 1538 161 32 25 chr15 83147880 83147991 -18232530 + AluSx SINE Alu 1 110 -196 3613 119 46 47 chr15 83147991 83148605 -18231916 + LTR18B LTR ERVL 2 614 0 1538 161 32 25 chr15 83148605 83148797 -18231724 + AluSx SINE Alu 110 306 0 1558 183 50 30 chr15 83148922 83149222 -18231299 - AluJb SINE Alu -6 306 1 206 354 25 13 chr15 83150334 83150413 -18230108 - MIR SINE MIR -109 99 20 2311 106 0 0 chr15 83150701 83150993 -18229528 + AluY SINE Alu 1 292 -19 1786 189 9 15 chr15 83151000 83151339 -18229182 + LTR2B LTR ERV1 154 490 0 647 152 39 5 chr15 83151345 83151486 -18229035 + L1MB7 LINE L1 5846 5963 -221 21 57 0 0 chr15 83151540 83151575 -18228946 + AT_rich Low_complexity Low_complexity 1 35 0 471 254 39 42 chr15 83151844 83152037 -18228484 - L1ME LINE L1 -460 5702 5509 2080 146 0 0 chr15 83152122 83152423 -18228098 - AluSx SINE Alu -11 301 1 2450 73 0 10 chr15 83152435 83152737 -18227784 - AluY SINE Alu -12 299 1 1645 166 0 0 chr15 83152786 83153033 -18227488 - AluJo SINE Alu -61 251 5 274 270 40 10 chr15 83153061 83153161 -18227360 - L1ME3A LINE L1 -258 5912 5810 596 251 86 56 chr15 83153167 83153447 -18227074 + L1ME LINE L1 5483 5780 -390 1333 161 12 56 chr15 83153820 83154029 -18226492 - AluJo SINE Alu 0 325 129 2404 91 3 0 chr15 83154029 83154337 -18226184 + AluY SINE Alu 1 309 -2 1333 161 12 56 chr15 83154337 83154419 -18226102 - AluJo SINE Alu -196 129 45 269 276 0 121 chr15 83154419 83154593 -18225928 - MIR SINE MIR -63 199 47 189 0 0 0 chr15 83155487 83155508 -18225013 + (A)n Simple_repeat Simple_repeat 1 21 0 316 273 121 10 chr15 83155971 83156070 -18224451 - MIR SINE MIR -133 129 20 378 0 0 0 chr15 83156382 83156424 -18224097 + (CA)n Simple_repeat Simple_repeat 2 43 0 1148 126 6 0 chr15 83157530 83157689 -18222832 + AluSq SINE Alu 1 160 -153 2004 87 14 38 chr15 83157689 83157978 -18222543 - AluSx SINE Alu -28 284 3 423 0 0 0 chr15 83159114 83159161 -18221360 + (TG)n Simple_repeat Simple_repeat 2 48 0 2059 132 3 7 chr15 83159323 83159626 -18220895 - AluSg SINE Alu -8 302 1 261 0 0 0 chr15 83160786 83160815 -18219706 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 306 0 0 0 chr15 83160814 83160848 -18219673 + (TG)n Simple_repeat Simple_repeat 2 35 0 2137 139 0 0 chr15 83160981 83161275 -18219246 - AluSx SINE Alu -18 294 1 824 203 239 15 chr15 83161751 83162077 -18218444 - Charlie1a DNA MER1_type 0 1455 1057 1147 195 0 9 chr15 83162101 83162322 -18218199 - AluJb SINE Alu -7 305 87 2298 188 174 41 chr15 83162326 83162893 -18217628 - Charlie1a DNA MER1_type -1847 914 223 1996 155 0 3 chr15 83162893 83163190 -18217331 - AluJb SINE Alu -16 296 1 2298 188 174 41 chr15 83163190 83163371 -18217150 - Charlie1a DNA MER1_type -2538 223 67 207 0 0 0 chr15 83163623 83163646 -18216875 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2274 97 3 7 chr15 83163766 83164066 -18216455 + AluY SINE Alu 4 302 -9 1980 118 40 0 chr15 83164212 83164509 -18216012 - AluSc SINE Alu 0 309 1 1527 242 121 20 chr15 83164870 83165407 -18215114 - MLT1E LTR MaLR 0 593 3 417 226 46 75 chr15 83166223 83166449 -18214072 - L1ME4a LINE L1 -3 6118 5898 2391 97 0 3 chr15 83166449 83166757 -18213764 - AluY SINE Alu -4 307 1 417 226 46 75 chr15 83166757 83166769 -18213752 - L1ME4a LINE L1 -223 5898 5887 250 247 75 11 chr15 83166997 83167090 -18213431 + L1P LINE L1 4392 4490 -1656 389 191 0 0 chr15 83167182 83167245 -18213276 + AluS SINE Alu 2 64 -239 1062 169 0 6 chr15 83167245 83167422 -18213099 + AluJb SINE Alu 132 307 -5 224 197 30 45 chr15 83167422 83167488 -18213033 + (TATATG)n Simple_repeat Simple_repeat 3 67 0 21 0 0 0 chr15 83167560 83167581 -18212940 + AT_rich Low_complexity Low_complexity 1 21 0 749 174 9 0 chr15 83167896 83168011 -18212510 + FLAM_C SINE Alu 2 117 -26 244 245 71 20 chr15 83168518 83168616 -18211905 + L2 LINE L2 1903 2005 -1309 288 287 48 53 chr15 83168624 83168812 -18211709 + L1MC4a LINE L1 5739 5925 -1883 309 109 0 0 chr15 83169604 83169650 -18210871 + (TC)n Simple_repeat Simple_repeat 1 46 0 2148 131 0 16 chr15 83169650 83169956 -18210565 - AluSq SINE Alu -12 301 1 3381 81 24 35 chr15 83170020 83170479 -18210042 - LTR15 LTR ERV1 -6 487 32 6975 44 102 5 chr15 83170479 83171422 -18209099 - L1PA5 LINE L1 -1 6153 5179 3381 81 24 35 chr15 83171422 83171454 -18209067 - LTR15 LTR ERV1 -461 32 1 235 286 134 0 chr15 83172035 83172147 -18208374 - MIR SINE MIR -50 212 86 265 272 11 22 chr15 83173148 83173240 -18207281 - HAL1 LINE L1 -196 2311 2221 21 0 0 0 chr15 83173375 83173396 -18207125 + AT_rich Low_complexity Low_complexity 1 21 0 419 283 148 21 chr15 83173425 83173662 -18206859 - HAL1 LINE L1 -604 1903 1637 795 220 14 51 chr15 83173679 83173893 -18206628 + MIR SINE MIR 28 233 -29 957 214 89 77 chr15 83173922 83174427 -18206094 - HAL1 LINE L1 -877 1630 1120 608 234 102 98 chr15 83174432 83174954 -18205567 - MLT1F LTR MaLR 0 542 19 459 257 104 30 chr15 83174972 83175174 -18205347 - HAL1 LINE L1 -1437 1070 854 2241 111 0 0 chr15 83175201 83175489 -18205032 - AluSp SINE Alu -24 289 2 1583 164 23 49 chr15 83175558 83175915 -18204606 + AluJb SINE Alu 1 312 0 300 329 66 66 chr15 83176056 83176497 -18204024 - HAL1 LINE L1 -2044 463 23 231 172 17 35 chr15 83176624 83176682 -18203839 - L1M4 LINE L1 -2285 3861 3805 989 194 42 28 chr15 83176864 83177080 -18203441 + MER20 DNA MER1_type 1 219 0 364 231 216 41 chr15 83177300 83177569 -18202952 - L1M4 LINE L1 -2884 3262 2947 2422 102 0 0 chr15 83177645 83177950 -18202571 + AluSp SINE Alu 2 306 -7 930 246 68 83 chr15 83178025 83178492 -18202029 - L1ME3A LINE L1 -97 6073 5614 191 290 93 56 chr15 83178808 83178915 -18201606 - L2 LINE L2 -2 3311 3201 2075 137 0 3 chr15 83179070 83179362 -18201159 - AluSc SINE Alu -8 301 11 441 301 80 47 chr15 83179387 83179686 -18200835 - HAL1 LINE L1 -1385 1122 814 22 80 0 0 chr15 83181096 83181146 -18199375 + AT_rich Low_complexity Low_complexity 1 50 0 2105 122 3 0 chr15 83181506 83181793 -18198728 + AluSx SINE Alu 1 288 -24 955 232 129 59 chr15 83182205 83182546 -18197975 - MLT1A1 LTR MaLR 0 365 1 1478 140 121 0 chr15 83182850 83182999 -18197522 - AluJo SINE Alu -15 297 167 319 21 42 0 chr15 83182999 83183047 -18197474 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 1478 140 121 0 chr15 83183047 83183162 -18197359 - AluJo SINE Alu -145 167 1 767 154 34 0 chr15 83184178 83184295 -18196226 - FRAM SINE Alu -25 151 31 334 305 61 0 chr15 83184667 83184798 -18195723 - L1ME LINE L1 -425 5696 5558 1933 164 0 7 chr15 83184828 83185133 -18195388 + AluSx SINE Alu 1 303 -9 1578 206 0 3 chr15 83185689 83185976 -18194545 - AluJo SINE Alu -26 286 1 234 252 32 89 chr15 83186322 83186445 -18194076 + MIR SINE MIR 107 222 -40 202 316 61 82 chr15 83186794 83186990 -18193531 - MIR SINE MIR -3 259 68 1812 162 0 7 chr15 83187510 83187818 -18192703 - AluSx SINE Alu 0 306 1 817 173 0 62 chr15 83188437 83188599 -18191922 + AluJb SINE Alu 146 297 -15 21 36 0 0 chr15 83189014 83189042 -18191479 + AT_rich Low_complexity Low_complexity 1 28 0 849 145 0 14 chr15 83189725 83189863 -18190658 + AluJb SINE Alu 177 312 0 311 98 20 0 chr15 83190150 83190201 -18190320 - MER30 DNA MER1_type 0 230 179 1574 198 6 6 chr15 83190208 83190521 -18190000 - AluSq SINE Alu 0 313 1 266 257 63 69 chr15 83190809 83190984 -18189537 + L1ME3A LINE L1 5987 6160 -10 2112 132 0 13 chr15 83191521 83191831 -18188690 + AluSq SINE Alu 1 306 -7 563 288 64 58 chr15 83192437 83192781 -18187740 + L3 LINE CR1 1055 1400 -177 193 299 145 26 chr15 83192790 83192907 -18187614 + L3b LINE CR1 1452 1582 -1 282 323 180 16 chr15 83193067 83193256 -18187265 - L1MDa LINE L1 -4512 1617 1398 316 283 132 33 chr15 83193290 83193442 -18187079 - L1MDa LINE L1 -4908 1211 1045 283 294 27 7 chr15 83193452 83193598 -18186923 - L1MDa LINE L1 -5133 999 851 244 282 90 0 chr15 83193787 83193865 -18186656 - L1MDa LINE L1 -5466 653 569 211 200 44 0 chr15 83194561 83194606 -18185915 - MER5A DNA MER1_type -142 47 1 323 214 22 0 chr15 83194648 83194737 -18185784 + (CATA)n Simple_repeat Simple_repeat 3 93 0 1588 194 3 3 chr15 83195556 83195845 -18184676 - AluJb SINE Alu -23 289 1 21 0 0 0 chr15 83195857 83195878 -18184643 + AT_rich Low_complexity Low_complexity 1 21 0 2005 145 3 7 chr15 83197263 83197566 -18182955 + AluSx SINE Alu 1 302 -10 1562 171 17 21 chr15 83198402 83198689 -18181832 - L1MB7 LINE L1 -18 6166 5881 191 36 36 0 chr15 83200920 83200948 -18179573 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2281 58 0 7 chr15 83200983 83201261 -18179260 + AluY SINE Alu 28 303 -8 624 180 187 13 chr15 83202106 83202257 -18178264 - MIR SINE MIR -64 198 30 221 0 35 0 chr15 83202391 83202420 -18178101 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 562 280 61 97 chr15 83202839 83203238 -18177283 + L1MEd LINE L1 561 932 -5187 1415 153 27 96 chr15 83203238 83203572 -18176949 + AluJb SINE Alu 1 311 -1 562 280 61 97 chr15 83203572 83203779 -18176742 + L1MEd LINE L1 932 1145 -4974 480 301 118 39 chr15 83203838 83204603 -18175918 + L1MEd LINE L1 2112 2936 -3193 183 162 0 0 chr15 83204610 83204647 -18175874 + CT-rich Low_complexity Low_complexity 6 42 0 250 286 124 19 chr15 83204797 83204902 -18175619 - L2 LINE L2 -18 3295 3180 227 255 0 0 chr15 83204902 83204953 -18175568 - L2 LINE L2 -1027 2287 2237 288 247 47 0 chr15 83205159 83205244 -18175277 + MIR SINE MIR 60 148 -114 418 299 90 37 chr15 83205437 83205571 -18174950 + L2 LINE L2 3117 3257 -15 558 207 9 17 chr15 83206254 83206370 -18174151 + FLAM_C SINE Alu 1 115 -18 948 238 70 35 chr15 83206894 83207235 -18173286 + L1MC4a LINE L1 5691 6043 -1765 248 221 47 23 chr15 83207882 83207968 -18172553 - L1MB7 LINE L1 -236 5885 5798 374 249 129 43 chr15 83207993 83208455 -18172066 - L1MB7 LINE L1 -461 5701 5189 566 189 4 34 chr15 83208481 83208715 -18171806 + CT-rich Low_complexity Low_complexity 1 227 0 1484 204 4 4 chr15 83208829 83209103 -18171418 - AluJo SINE Alu -38 274 1 901 195 7 0 chr15 83209847 83210001 -18170520 - MER5A DNA MER1_type -33 156 2 2187 112 0 0 chr15 83210337 83210649 -18169872 - AluSx SINE Alu 0 312 1 259 274 36 12 chr15 83213369 83213481 -18167040 + MIR SINE MIR 72 150 -58 247 326 138 0 chr15 83214446 83214584 -18165937 + MIR3 SINE MIR 31 187 -21 337 294 59 25 chr15 83214602 83214721 -18165800 + L2 LINE L2 3188 3310 -3 250 222 37 0 chr15 83215053 83215107 -18165414 + MIR SINE MIR 94 149 -59 290 343 0 6 chr15 83215982 83216160 -18164361 + GA-rich Low_complexity Low_complexity 2 178 0 191 217 4 0 chr15 83216434 83216479 -18164042 + MIR SINE MIR 100 146 -62 1939 138 6 31 chr15 83217015 83217333 -18163188 + AluSx SINE Alu 2 311 -1 272 301 173 0 chr15 83217388 83217521 -18163000 + MIR SINE MIR 101 256 -6 275 315 0 0 chr15 83218306 83218471 -18162050 + T-rich Low_complexity Low_complexity 1 165 0 22 35 0 0 chr15 83220747 83220776 -18159745 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 83221329 83221351 -18159170 + AT_rich Low_complexity Low_complexity 1 22 0 315 71 0 0 chr15 83222842 83222884 -18157637 + (TG)n Simple_repeat Simple_repeat 1 42 0 199 268 48 75 chr15 83225629 83225802 -18154719 - MIR SINE MIR -64 144 22 244 282 70 14 chr15 83226550 83226621 -18153900 - MIR SINE MIR -177 85 11 378 0 0 0 chr15 83226922 83226964 -18153557 + (CA)n Simple_repeat Simple_repeat 2 43 0 540 0 0 0 chr15 83228241 83228301 -18152220 + (TG)n Simple_repeat Simple_repeat 1 60 0 2205 123 3 0 chr15 83228458 83228760 -18151761 - AluSg SINE Alu -7 303 1 222 118 0 0 chr15 83229905 83229939 -18150582 + (TG)n Simple_repeat Simple_repeat 2 35 0 2310 98 17 3 chr15 83230074 83230371 -18150150 - AluSx SINE Alu -11 301 1 882 211 146 65 chr15 83230846 83231215 -18149306 - Charlie1a DNA MER1_type 0 1455 1057 1286 162 0 10 chr15 83231245 83231449 -18149072 - AluJb SINE Alu -24 288 87 2341 181 139 91 chr15 83231453 83232021 -18148500 - Charlie1a DNA MER1_type -1847 914 375 1850 158 0 10 chr15 83232021 83232313 -18148208 - AluJb SINE Alu -11 301 13 2341 181 139 91 chr15 83232313 83232371 -18148150 - Charlie1a DNA MER1_type -2386 375 321 1965 148 0 7 chr15 83232371 83232668 -18147853 - AluSx SINE Alu -13 299 5 2341 181 139 91 chr15 83232668 83232854 -18147667 - Charlie1a DNA MER1_type -2440 321 62 1561 258 40 32 chr15 83233046 83233574 -18146947 + HAL1 LINE L1 1162 1693 -814 220 241 19 0 chr15 83234585 83234639 -18145882 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 2305 108 0 0 chr15 83234952 83235259 -18145262 + AluSx SINE Alu 1 307 -5 1872 143 0 14 chr15 83235682 83235961 -18144560 + AluJo SINE Alu 12 286 -26 255 244 0 0 chr15 83236025 83236103 -18144418 - MIR SINE MIR -4 258 181 312 238 274 6 chr15 83236155 83236323 -18144198 + MIR SINE MIR 47 259 -3 1818 93 0 51 chr15 83236950 83237096 -18143425 + AluSg SINE Alu 1 130 -180 2400 82 0 0 chr15 83237096 83237390 -18143131 + AluY SINE Alu 1 294 -17 1818 93 0 51 chr15 83237390 83237500 -18143021 + AluSg SINE Alu 130 244 -66 2942 243 15 37 chr15 83237993 83239360 -18141161 - L1PBa LINE L1 -5219 1644 629 2402 97 0 0 chr15 83239479 83239777 -18140744 - AluSx SINE Alu -13 299 2 323 201 0 129 chr15 83239783 83239922 -18140599 + MIR SINE MIR 86 206 -56 469 270 57 102 chr15 83240344 83240515 -18140006 + HAL1 LINE L1 413 565 -1942 1966 135 38 3 chr15 83240515 83240804 -18139717 + AluSx SINE Alu 1 299 -13 469 270 57 102 chr15 83240804 83240947 -18139574 + HAL1 LINE L1 565 713 -1794 1682 167 58 0 chr15 83241123 83241399 -18139122 + AluJb SINE Alu 1 292 -20 469 42 28 0 chr15 83241712 83241784 -18138737 + (CA)n Simple_repeat Simple_repeat 2 75 0 309 100 0 0 chr15 83242503 83242553 -18137968 + (TG)n Simple_repeat Simple_repeat 1 50 0 679 250 54 0 chr15 83242674 83242858 -18137663 - MIR SINE MIR -10 252 59 540 268 19 1 chr15 83242885 83243040 -18137481 + MIR SINE MIR 38 193 -62 233 273 71 10 chr15 83243541 83243640 -18136881 + L1ME4a LINE L1 5991 6095 -26 933 276 62 83 chr15 83244260 83244680 -18135841 - MLT1E LTR MaLR -182 411 1 292 294 232 38 chr15 83245559 83245770 -18134751 - MIR SINE MIR -5 257 6 324 0 0 0 chr15 83246126 83246162 -18134359 + (TA)n Simple_repeat Simple_repeat 2 37 0 2045 128 0 0 chr15 83246162 83246444 -18134077 - AluSx SINE Alu -28 284 3 969 266 105 60 chr15 83246660 83247145 -18133376 + MLT1K LTR MaLR 79 585 -3 6000 143 8 43 chr15 83247804 83247879 -18132642 + L1MA4 LINE L1 4925 5001 -1299 2429 69 3 0 chr15 83247879 83248168 -18132353 + AluSp SINE Alu 9 298 -15 6000 143 8 43 chr15 83248168 83248553 -18131968 + L1MA4 LINE L1 5001 5398 -902 2123 143 0 3 chr15 83248553 83248854 -18131667 + AluSx SINE Alu 1 300 -12 6000 143 8 43 chr15 83248854 83249813 -18130708 + L1MA4 LINE L1 5398 6299 -1 1840 156 14 3 chr15 83249883 83250165 -18130356 - AluJb SINE Alu -27 285 1 528 284 34 7 chr15 83250574 83250722 -18129799 - MLT1J LTR MaLR -290 221 70 201 162 0 0 chr15 83250787 83250824 -18129697 + T-rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr15 83250841 83250862 -18129659 + AT_rich Low_complexity Low_complexity 1 21 0 1969 158 0 7 chr15 83250876 83251180 -18129341 + AluJo SINE Alu 1 302 -10 2517 265 96 73 chr15 83251204 83252394 -18128127 + L1MCc LINE L1 20 1244 -5179 2433 91 0 0 chr15 83252394 83252691 -18127830 + AluSx SINE Alu 1 297 -15 2517 265 96 73 chr15 83252691 83252804 -18127717 + L1MCc LINE L1 1244 1353 -5070 10548 173 15 15 chr15 83252861 83254585 -18125936 - L1PB3 LINE L1 -7 6204 4483 233 29 29 0 chr15 83254585 83254619 -18125902 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 10548 173 15 15 chr15 83254619 83255919 -18124602 - L1PB3 LINE L1 -1728 4483 3184 1945 156 0 3 chr15 83255919 83256306 -18124215 - AluSx SINE Alu 0 386 1 1584 116 10 89 chr15 83256308 83256610 -18123911 - L1PB3 LINE L1 -5252 952 675 2072 158 27 3 chr15 83256792 83257159 -18123362 + L1MB3 LINE L1 5633 6008 -175 1706 144 99 7 chr15 83257397 83257681 -18122840 + AluJo SINE Alu 1 310 -2 725 210 6 61 chr15 83258260 83258430 -18122091 + AluJb SINE Alu 137 298 -14 2500 68 25 37 chr15 83258430 83258498 -18122023 - L1PA8 LINE L1 -4 6168 6101 2547 52 0 16 chr15 83258498 83258808 -18121713 + AluY SINE Alu 1 305 -6 2500 68 25 37 chr15 83258808 83259094 -18121427 - L1PA8 LINE L1 -71 6101 5818 207 259 74 0 chr15 83259541 83259595 -18120926 - L2 LINE L2 -65 3207 3150 457 315 79 58 chr15 83259701 83260437 -18120084 + L2 LINE L2 2545 3272 0 2200 114 0 0 chr15 83260541 83260840 -18119681 - AluSg SINE Alu -11 299 1 1823 158 0 17 chr15 83260896 83261187 -18119334 + AluJo SINE Alu 1 286 -26 207 0 0 0 chr15 83261292 83261315 -18119206 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 760 274 110 24 chr15 83261351 83261752 -18118769 - LTR33 LTR ERVL -38 483 11 1978 146 0 23 chr15 83262152 83262453 -18118068 + AluSx SINE Alu 1 294 -18 1619 153 21 56 chr15 83262945 83263256 -18117265 + AluJo SINE Alu 5 305 0 21 0 0 0 chr15 83263262 83263283 -18117238 + AT_rich Low_complexity Low_complexity 1 21 0 2140 124 0 3 chr15 83263348 83263646 -18116875 + AluSq SINE Alu 1 297 -16 1039 236 64 72 chr15 83263646 83264146 -18116375 - L1MC4 LINE L1 -143 7899 7404 360 131 71 0 chr15 83264263 83264347 -18116174 + (CATATA)n Simple_repeat Simple_repeat 1 90 0 2146 130 0 0 chr15 83264351 83264644 -18115877 - AluSx SINE Alu -19 293 1 595 150 0 0 chr15 83265562 83265662 -18114859 + L1MA7 LINE L1 6191 6290 -1 650 270 131 33 chr15 83265798 83266352 -18114169 + L1ME LINE L1 4784 5432 -732 2058 139 7 10 chr15 83266352 83266654 -18113867 + AluSx SINE Alu 1 301 -11 650 270 131 33 chr15 83266654 83266824 -18113697 + L1ME LINE L1 5432 5584 -580 1866 125 32 0 chr15 83266856 83267137 -18113384 + AluSx SINE Alu 5 294 -18 698 123 23 0 chr15 83267262 83267433 -18113088 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 1092 256 53 0 chr15 83267772 83268185 -18112336 - L1MCc LINE L1 -4892 1531 1385 998 253 36 92 chr15 83268189 83268326 -18112195 + L1PBa LINE L1 3 146 -6717 2163 122 14 0 chr15 83268326 83268622 -18111899 - AluSx SINE Alu -12 300 1 998 253 36 92 chr15 83268622 83268962 -18111559 + L1PBa LINE L1 146 453 -6410 183 304 89 0 chr15 83269855 83269911 -18110610 - MIR3 SINE MIR -136 72 12 944 179 17 0 chr15 83270038 83270211 -18110310 - MER5A DNA MER1_type -7 182 7 21 0 0 0 chr15 83270786 83270807 -18109714 + AT_rich Low_complexity Low_complexity 1 21 0 2377 102 0 0 chr15 83270814 83271118 -18109403 + AluSq SINE Alu 1 304 -9 313 169 51 0 chr15 83271503 83271562 -18108959 - MER5A DNA MER1_type -122 67 6 300 312 116 28 chr15 83271847 83272062 -18108459 - MIR SINE MIR -17 245 12 2078 113 14 0 chr15 83272351 83272633 -18107888 + AluSx SINE Alu 1 286 -26 21 0 0 0 chr15 83272637 83272658 -18107863 + AT_rich Low_complexity Low_complexity 1 21 0 299 203 0 14 chr15 83272715 83272789 -18107732 - L1ME4a LINE L1 -2 6119 6047 1017 180 28 37 chr15 83272857 83273074 -18107447 + MER20 DNA MER1_type 1 215 -4 442 226 157 19 chr15 83273533 83273692 -18106829 + MER5A DNA MER1_type 9 189 0 317 250 71 18 chr15 83275499 83275611 -18104910 - MIR SINE MIR -87 175 58 2176 128 0 0 chr15 83275684 83275981 -18104540 + AluSx SINE Alu 1 297 -15 1156 224 54 92 chr15 83275981 83276109 -18104412 - L1MC4a LINE L1 -1680 6128 5997 1531 375 7 0 chr15 83276109 83276410 -18104111 - AluY SINE Alu -8 303 1 1156 224 54 92 chr15 83276410 83276762 -18103759 - L1MC4a LINE L1 -1811 5997 5666 459 0 0 0 chr15 83277370 83277421 -18103100 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1985 115 11 11 chr15 83277422 83277708 -18102813 - AluSg SINE Alu -24 286 1 1915 152 0 3 chr15 83278616 83278905 -18101616 + AluJo SINE Alu 1 288 -24 208 256 67 44 chr15 83279329 83279419 -18101102 + MIR SINE MIR 8 99 -163 561 214 15 15 chr15 83279431 83279562 -18100959 - FLAM_C SINE Alu -5 138 8 637 102 0 11 chr15 83280986 83281074 -18099447 + AluS SINE Alu 8 94 -219 252 253 60 22 chr15 83281407 83281554 -18098967 + MIR SINE MIR 13 200 -62 290 180 49 0 chr15 83281682 83281743 -18098778 + MIR SINE MIR 86 149 -59 393 138 64 43 chr15 83282196 83282290 -18098231 - MIR SINE MIR -55 153 58 246 300 56 32 chr15 83283784 83283950 -18096571 - MIR SINE MIR -60 148 21 319 272 142 12 chr15 83284607 83284769 -18095752 - L2 LINE L2 -173 3099 2917 496 237 89 15 chr15 83284899 83285034 -18095487 + MIR SINE MIR 95 239 -23 240 260 96 20 chr15 83286133 83286272 -18094249 + MIR SINE MIR 43 193 -62 272 265 0 63 chr15 83286520 83286709 -18093812 + C-rich Low_complexity Low_complexity 2 178 0 2215 85 3 3 chr15 83287101 83287420 -18093101 - AluSx SINE Alu 0 319 1 376 328 25 5 chr15 83288591 83288789 -18091732 - MIR SINE MIR -12 250 49 221 132 0 26 chr15 83292379 83292417 -18088104 - MIR SINE MIR -63 145 109 308 258 109 15 chr15 83293968 83294151 -18086370 + MIR SINE MIR 22 230 -32 228 272 37 12 chr15 83295095 83295176 -18085345 + MIR SINE MIR 65 147 -115 2149 134 59 3 chr15 83295524 83295881 -18084640 + MSTA LTR MaLR 52 428 0 25 65 0 0 chr15 83296233 83296279 -18084242 + AT_rich Low_complexity Low_complexity 1 46 0 2417 107 0 0 chr15 83296295 83296604 -18083917 + AluSq SINE Alu 1 309 -4 2228 106 0 37 chr15 83296608 83296929 -18083592 + AluSg SINE Alu 1 309 -1 2118 123 7 3 chr15 83297331 83297624 -18082897 + AluSx SINE Alu 3 296 -16 207 100 0 0 chr15 83297639 83297669 -18082852 + (GGAA)n Simple_repeat Simple_repeat 4 33 0 434 221 12 20 chr15 83297793 83297934 -18082587 + MLT1H LTR MaLR 453 549 0 2385 112 0 0 chr15 83298060 83298364 -18082157 - AluSq SINE Alu -9 304 1 341 326 65 16 chr15 83299230 83299414 -18081107 + MIR SINE MIR 20 212 -50 987 110 0 22 chr15 83300683 83300819 -18079702 - AluSg/x SINE Alu -16 296 164 1771 147 84 4 chr15 83300935 83301208 -18079313 + AluJb SINE Alu 1 295 -17 2270 93 26 0 chr15 83301605 83301907 -18078614 - AluY SINE Alu -1 310 1 485 278 105 5 chr15 83302053 83302244 -18078277 - MLT1J2 LTR MaLR 0 450 241 2313 99 0 3 chr15 83302707 83302999 -18077522 - AluSc SINE Alu -18 291 1 848 189 12 102 chr15 83304480 83304517 -18076004 - MER58A DNA MER1_type -2198 222 183 2058 137 6 19 chr15 83304517 83304832 -18075689 - AluSx SINE Alu -1 311 1 848 189 12 102 chr15 83304832 83305038 -18075483 - MER58A DNA MER1_type -2237 183 1 203 206 0 48 chr15 83305128 83305191 -18075330 + CT-rich Low_complexity Low_complexity 2 61 0 2318 89 7 0 chr15 83306304 83306597 -18073924 + AluSp SINE Alu 15 309 -4 387 91 0 0 chr15 83307397 83307452 -18073069 - MLT2A1 LTR ERVL 0 444 390 228 182 0 0 chr15 83307457 83307501 -18073020 + (TA)n Simple_repeat Simple_repeat 2 45 0 2675 87 25 22 chr15 83307503 83307904 -18072617 - MLT2A1 LTR ERVL -40 404 3 377 345 7 0 chr15 83307988 83308130 -18072391 + (TG)n Simple_repeat Simple_repeat 1 143 0 335 141 0 0 chr15 83308694 83308758 -18071763 - MLT2A2 LTR ERVL -389 64 1 415 250 6 6 chr15 83308912 83309088 -18071433 + (TG)n Simple_repeat Simple_repeat 1 176 0 2401 94 0 0 chr15 83309464 83309763 -18070758 - AluSc SINE Alu -10 299 1 257 79 26 0 chr15 83310151 83310189 -18070332 - MSTA LTR MaLR 0 428 390 1207 127 95 9 chr15 83310189 83310410 -18070111 - MSTA LTR MaLR -188 240 1 240 143 0 0 chr15 83310453 83310495 -18070026 + MER116 DNA Mariner 14 55 -25 383 364 22 5 chr15 83310850 83311034 -18069487 + MIR SINE MIR 59 245 -17 1282 67 6 0 chr15 83311041 83311219 -18069302 + L1MA1 LINE L1 6120 6298 -4 1202 185 128 12 chr15 83311251 83311528 -18068993 - AluSg SINE Alu 0 308 3 2415 83 7 7 chr15 83311530 83311831 -18068690 - AluY SINE Alu -10 301 1 1160 203 42 5 chr15 83311883 83312095 -18068426 - AluJo SINE Alu -92 220 1 1482 212 105 74 chr15 83312163 83312643 -18067878 - MLT1E LTR MaLR 0 593 91 1737 133 4 33 chr15 83312643 83312941 -18067580 + AluSx SINE Alu 28 312 0 1482 212 105 74 chr15 83312941 83313031 -18067490 - MLT1E LTR MaLR -502 91 5 26 64 0 0 chr15 83313133 83313180 -18067341 + AT_rich Low_complexity Low_complexity 1 47 0 1892 162 16 7 chr15 83313347 83313656 -18066865 + AluSx SINE Alu 1 312 0 396 297 155 7 chr15 83313737 83314027 -18066494 + L1ME LINE L1 5486 5818 -303 2225 120 0 13 chr15 83314038 83314355 -18066166 + AluSp SINE Alu 1 313 0 472 202 11 0 chr15 83314658 83314752 -18065769 - FRAM SINE Alu -25 151 57 417 20 0 0 chr15 83314854 83314904 -18065617 + (CA)n Simple_repeat Simple_repeat 2 51 0 205 225 155 0 chr15 83314977 83315048 -18065473 + MIR SINE MIR 71 152 -56 265 185 19 0 chr15 83316039 83316093 -18064428 - MIR SINE MIR -68 140 86 2304 115 0 10 chr15 83318573 83318885 -18061636 + AluSx SINE Alu 1 309 -3 225 202 57 3 chr15 83319052 83319135 -18061386 - MIR SINE MIR -55 153 66 375 169 0 0 chr15 83320931 83321002 -18059519 + (CA)n Simple_repeat Simple_repeat 2 72 0 208 70 47 23 chr15 83321897 83321940 -18058581 + A-rich Low_complexity Low_complexity 2 45 0 22 0 0 0 chr15 83322500 83322522 -18057999 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr15 83323080 83323108 -18057413 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr15 83324270 83324306 -18056215 + AT_rich Low_complexity Low_complexity 1 36 0 1938 106 84 4 chr15 83325576 83325850 -18054671 - AluSg SINE Alu -14 296 1 702 189 0 23 chr15 83327693 83327825 -18052696 + FLAM_A SINE Alu 1 129 -4 180 263 13 53 chr15 83328199 83328275 -18052246 + MIR3 SINE MIR 117 189 -19 242 149 0 0 chr15 83328866 83328909 -18051612 - MIR SINE MIR -62 146 109 1089 112 79 0 chr15 83329126 83329340 -18051181 + L1MA8 LINE L1 6060 6290 -1 2599 244 119 21 chr15 83329346 83331175 -18049346 + L1ME2 LINE L1 4154 6154 -10 433 279 162 26 chr15 83331368 83331597 -18048924 - MIR SINE MIR -1 261 2 192 219 49 0 chr15 83333102 83333143 -18047378 - MIR SINE MIR -101 161 119 1169 319 135 14 chr15 83333388 83334233 -18046288 + L2 LINE L2 1886 2832 -482 186 308 19 77 chr15 83334300 83334404 -18046117 + L2 LINE L2 2954 3051 -221 182 268 70 14 chr15 83334626 83334697 -18045824 + L2 LINE L2 2678 2752 -562 370 238 177 14 chr15 83336410 83336557 -18043964 + L2 LINE L2 3026 3196 -117 363 317 63 36 chr15 83336752 83336973 -18043548 + L2 LINE L2 2328 2554 -760 291 292 67 25 chr15 83337857 83337977 -18042544 + LTR67 LTR ERVL 428 552 -5 344 235 29 103 chr15 83338220 83338280 -18042241 + MIR SINE MIR 44 90 -172 2024 126 7 3 chr15 83338280 83338574 -18041947 - AluJb SINE Alu -17 295 1 344 235 29 103 chr15 83338574 83338649 -18041872 + MIR SINE MIR 90 169 -93 1975 68 8 4 chr15 83338654 83338903 -18041618 - AluSp SINE Alu -11 302 53 354 111 0 19 chr15 83338904 83338958 -18041563 - FRAM/FAM SINE Alu -105 70 18 772 256 72 79 chr15 83339121 83339338 -18041183 + L1MC4a LINE L1 5277 5494 -2314 2123 113 0 0 chr15 83339338 83339612 -18040909 + AluSg SINE Alu 1 274 -36 772 256 72 79 chr15 83339612 83339948 -18040573 + L1MC4a LINE L1 5494 5826 -1982 * 2246 189 24 17 chr15 83339933 83340393 -18040128 + L1MC1 LINE L1 7 469 -5957 986 183 71 4 chr15 83340400 83340640 -18039881 + L1MC1 LINE L1 1052 1307 -5119 821 138 0 39 chr15 83340640 83340770 -18039751 + FLAM_C SINE Alu 1 125 -8 2379 96 10 10 chr15 83340774 83341087 -18039434 + AluSp SINE Alu 1 313 0 4272 237 75 36 chr15 83341087 83341144 -18039377 + L1MC1 LINE L1 2532 2585 -4028 1683 110 0 4 chr15 83341144 83341371 -18039150 + AluSc SINE Alu 71 296 -13 4272 237 75 36 chr15 83341371 83341817 -18038704 + L1MC1 LINE L1 2585 3012 -3601 2503 80 0 3 chr15 83341817 83342129 -18038392 + AluY SINE Alu 1 311 0 4272 237 75 36 chr15 83342129 83342140 -18038381 + L1MC1 LINE L1 3012 3021 -3592 1738 191 0 3 chr15 83342140 83342423 -18038098 + AluJo SINE Alu 1 282 -30 4272 237 75 36 chr15 83342423 83342555 -18037966 + L1MC1 LINE L1 3021 3146 -3467 1996 163 0 0 chr15 83342555 83342856 -18037665 + AluJb SINE Alu 1 301 -11 4272 237 75 36 chr15 83342856 83343363 -18037158 + L1MC1 LINE L1 3146 3632 -2981 2415 102 0 0 chr15 83343363 83343666 -18036855 + AluSx SINE Alu 1 303 -9 4272 237 75 36 chr15 83343666 83345910 -18034611 + L1MC1 LINE L1 3632 6188 -425 754 234 7 7 chr15 83346368 83346522 -18033999 + AluJb SINE Alu 2 155 -157 826 92 202 81 chr15 83346813 83346986 -18033535 - MER46A DNA MER2_type -35 201 8 1366 131 45 5 chr15 83347883 83348105 -18032416 - AluJb SINE Alu -81 231 1 185 316 123 26 chr15 83348107 83348221 -18032300 + L3 LINE CR1 1089 1213 -364 180 0 0 0 chr15 83348221 83348241 -18032280 + (T)n Simple_repeat Simple_repeat 1 20 0 2368 96 0 28 chr15 83348253 83348575 -18031946 + AluSq SINE Alu 1 313 0 649 213 47 33 chr15 83348849 83349060 -18031461 - L1ME3 LINE L1 -29 6133 5920 181 219 0 0 chr15 83349295 83349327 -18031194 + MIR3 SINE MIR 158 189 -19 231 250 0 16 chr15 83349970 83350034 -18030487 + (CCG)n Simple_repeat Simple_repeat 1 63 0 21 0 0 0 chr15 83350419 83350440 -18030081 + GC_rich Low_complexity Low_complexity 1 21 0 593 154 73 16 chr15 83352300 83352423 -18028098 - FLAM_C SINE Alu -2 131 2 188 302 240 0 chr15 83352497 83352593 -18027928 + MIR SINE MIR 20 138 -124 1848 56 0 9 chr15 83353303 83353534 -18026987 + L1PA7 LINE L1 5926 6154 0 2321 86 17 0 chr15 83353725 83354015 -18026506 - AluSg SINE Alu -15 295 1 2550 84 0 0 chr15 83354206 83354516 -18026005 + AluSx SINE Alu 1 310 -2 1483 175 40 0 chr15 83354516 83354767 -18025754 - AluJo SINE Alu -35 277 16 1178 253 83 0 chr15 83354776 83355183 -18025338 - L1M4 LINE L1 -1539 4607 4167 281 83 0 0 chr15 83355183 83355231 -18025290 - AluSp/q SINE Alu 0 303 256 1333 225 252 9 chr15 83356726 83357166 -18023355 - LTR10B LTR ERV1 0 547 1 26207 242 26 24 chr15 83357170 83363866 -18016655 - HERVI LTR ERV1 -2 7783 1074 3719 183 78 6 chr15 83363976 83364215 -18016306 - HERVI LTR ERV1 -5811 838 618 252 0 0 0 chr15 83364215 83364243 -18016278 + (TTTCC)n Simple_repeat Simple_repeat 5 32 0 3719 183 78 6 chr15 83364243 83364785 -18015736 - HERVI LTR ERV1 -6031 618 1 2389 91 0 28 chr15 83364800 83365120 -18015401 + AluY SINE Alu 1 311 0 1107 180 30 69 chr15 83365120 83365557 -18014964 - LTR10B LTR ERV1 -5 542 1 432 211 0 11 chr15 83366120 83366215 -18014306 + LTR9B LTR ERV1 7 100 -544 1155 116 0 0 chr15 83366215 83366370 -18014151 - AluSg/x SINE Alu -2 308 154 2147 168 107 7 chr15 83366373 83366831 -18013690 + LTR9B LTR ERV1 141 644 0 342 0 0 0 chr15 83367509 83367547 -18012974 + (TG)n Simple_repeat Simple_repeat 2 39 0 435 19 0 0 chr15 83368854 83368906 -18011615 + (TG)n Simple_repeat Simple_repeat 2 53 0 2223 131 0 0 chr15 83369044 83369341 -18011180 - AluSx SINE Alu -15 297 1 756 206 236 12 chr15 83369809 83370135 -18010386 - Charlie1 DNA MER1_type 0 2761 2363 1197 181 0 9 chr15 83370162 83370377 -18010144 - AluJb SINE Alu -1 311 99 386 231 58 74 chr15 83370458 83370701 -18009820 - L1ME4a LINE L1 -3 6118 5880 2555 70 0 3 chr15 83370701 83371013 -18009508 - AluY SINE Alu 0 311 1 320 298 107 18 chr15 83371071 83371239 -18009282 + L1M4 LINE L1 4191 4373 -1773 242 237 75 11 chr15 83371252 83371345 -18009176 + L1P LINE L1 4392 4490 -1656 1033 191 0 7 chr15 83371437 83371678 -18008843 + AluSx SINE Alu 2 308 -4 236 131 50 20 chr15 83371687 83371786 -18008735 + (TA)n Simple_repeat Simple_repeat 1 102 0 832 112 0 0 chr15 83372197 83372304 -18008217 + FLAM_C SINE Alu 1 107 -36 186 43 0 0 chr15 83372304 83372327 -18008194 + (TC)n Simple_repeat Simple_repeat 1 23 0 195 114 0 0 chr15 83372328 83372363 -18008158 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 225 65 0 0 chr15 83372592 83372623 -18007898 + (CATA)n Simple_repeat Simple_repeat 2 32 0 270 308 159 28 chr15 83372775 83372957 -18007564 + L2 LINE L2 1818 2023 -1291 363 330 33 71 chr15 83372958 83373140 -18007381 + L1MC4a LINE L1 5751 5925 -1883 212 263 145 0 chr15 83373242 83373318 -18007203 - L2 LINE L2 -23 3249 3163 242 327 116 45 chr15 83373413 83373612 -18006909 + L2 LINE L2 2139 2351 -963 2215 115 0 0 chr15 83373877 83374164 -18006357 - AluSq SINE Alu -26 287 1 875 41 98 0 chr15 83374228 83374351 -18006170 - LTR15 LTR ERV1 -9 484 350 1002 181 126 15 chr15 83374359 83374558 -18005963 + 7SLRNA srpRNA srpRNA 95 315 -5 231 36 0 0 chr15 83375593 83375621 -18004900 + (TGGGGG)n Simple_repeat Simple_repeat 5 32 0 239 288 190 19 chr15 83378486 83378644 -18001877 - MIR3 SINE MIR -64 144 4 191 263 50 38 chr15 83380570 83380650 -17999871 - MIR3 SINE MIR -43 165 85 1518 127 25 20 chr15 83380731 83380976 -17999545 - AluJb SINE Alu -32 280 35 307 277 12 12 chr15 83381103 83381186 -17999335 + MIR SINE MIR 66 148 -114 195 42 0 0 chr15 83381928 83381952 -17998569 + (CCCTG)n Simple_repeat Simple_repeat 5 28 0 255 329 12 0 chr15 83384470 83384552 -17995969 + MIR SINE MIR 65 147 -61 322 175 18 0 chr15 83384822 83384900 -17995621 - MIR SINE MIR -62 146 104 231 233 38 113 chr15 83385200 83385312 -17995209 + MIR SINE MIR 86 188 -74 2291 94 0 7 chr15 83385312 83385609 -17994912 - AluY SINE Alu -16 295 1 231 233 38 113 chr15 83385609 83385629 -17994892 + MIR SINE MIR 188 208 -54 1258 151 48 10 chr15 83386432 83386638 -17993883 - AluJb SINE Alu -16 296 83 265 342 60 20 chr15 83387043 83387192 -17993329 + L2 LINE L2 2910 3064 -208 265 235 111 0 chr15 83387489 83387570 -17992951 + MER5A DNA MER1_type 47 136 -53 262 312 64 0 chr15 83391482 83391591 -17988930 - L2 LINE L2 -1 3271 3156 785 190 0 29 chr15 83392223 83392360 -17988161 - FLAM_C SINE Alu 0 133 1 198 248 92 55 chr15 83392872 83392981 -17987540 - MIR SINE MIR -63 145 33 322 225 14 0 chr15 83394926 83394997 -17985524 - MER63 DNA MER1_type -9 1052 981 * 397 273 27 0 chr15 83394992 83395102 -17985419 - MER63 DNA MER1_type -95 741 3 2802 90 14 110 chr15 83395141 83395632 -17984889 - MLT2A1 LTR ERVL 0 444 1 243 103 0 0 chr15 83396790 83396829 -17983692 + (TG)n Simple_repeat Simple_repeat 2 40 0 236 284 14 0 chr15 83396830 83396891 -17983630 + (TA)n Simple_repeat Simple_repeat 2 66 -10 2019 115 0 0 chr15 83396891 83397177 -17983344 - AluSg SINE Alu -24 286 1 236 284 14 0 chr15 83397177 83397189 -17983332 + (TA)n Simple_repeat Simple_repeat 66 76 0 252 252 117 53 chr15 83397190 83397396 -17983125 + L1ME4a LINE L1 5903 6121 0 1541 251 126 19 chr15 83398218 83398752 -17981769 + MLT1E LTR MaLR 3 593 0 2106 95 10 3 chr15 83399036 83399341 -17981180 + AluSc SINE Alu 1 307 -2 2180 100 3 0 chr15 83399485 83399784 -17980737 - AluY SINE Alu -11 300 1 2328 192 166 39 chr15 83400172 83400353 -17980168 + Charlie1a DNA MER1_type 67 223 -2538 1876 155 0 3 chr15 83400353 83400650 -17979871 + AluJb SINE Alu 1 296 -16 2328 192 166 39 chr15 83400650 83401219 -17979302 + Charlie1a DNA MER1_type 223 913 -542 1098 196 0 9 chr15 83401224 83401448 -17979073 + AluJb SINE Alu 87 308 -4 279 252 197 16 chr15 83401471 83401598 -17978923 + Charlie1a DNA MER1_type 1057 1206 -249 1305 168 90 4 chr15 83401922 83402190 -17978331 - AluJb SINE Alu -21 291 1 808 159 8 0 chr15 83402333 83402465 -17978056 + AluJb SINE Alu 1 133 -179 836 161 0 7 chr15 83403443 83403580 -17976941 + AluJb SINE Alu 121 256 -56 1882 142 0 14 chr15 83404107 83404403 -17976118 + AluJb SINE Alu 9 300 -12 231 354 25 13 chr15 83405131 83405210 -17975311 + MIR SINE MIR 20 99 -109 194 313 16 0 chr15 83405212 83405276 -17975245 - L2 LINE L2 -8 3305 3241 183 277 0 0 chr15 83405390 83405437 -17975084 + MIR SINE MIR 157 203 -59 1398 161 98 32 chr15 83406324 83406609 -17973912 + AluJb SINE Alu 1 304 -8 1627 150 27 24 chr15 83406735 83406917 -17973604 - AluSx SINE Alu -17 295 110 3556 118 56 48 chr15 83406917 83407525 -17972996 - LTR18B LTR ERVL 0 614 2 1627 150 27 24 chr15 83407525 83407636 -17972885 - AluSx SINE Alu -202 110 1 280 167 0 0 chr15 83407729 83407777 -17972744 - L1ME LINE L1 -360 5761 5714 356 240 59 87 chr15 83407847 83408029 -17972492 + MIR3 SINE MIR 31 207 -1 432 92 0 0 chr15 83408258 83408323 -17972198 - Alu SINE Alu -7 305 241 967 345 62 24 chr15 83408345 83409002 -17971519 - HERV16 LTR ERVL -3466 1530 849 299 103 0 35 chr15 83409281 83409339 -17971182 + (TCTCC)n Simple_repeat Simple_repeat 3 58 0 1877 170 0 10 chr15 83409348 83409660 -17970861 - AluJb SINE Alu -3 309 1 203 162 0 0 chr15 83410796 83410833 -17969688 + (CCCTG)n Simple_repeat Simple_repeat 4 40 0 473 298 43 65 chr15 83410838 83411160 -17969361 - MLT1K LTR MaLR -6 582 268 1364 204 20 76 chr15 83411277 83411670 -17968851 - MLT1A2 LTR MaLR 0 374 4 2027 118 10 7 chr15 83412215 83412520 -17968001 - AluSc SINE Alu -3 306 1 2999 128 54 91 chr15 83412548 83413163 -17967358 - LTR14B LTR ERVK 0 608 17 2162 231 52 130 chr15 83413164 83414394 -17966127 + HAL1 LINE L1 1338 2471 -36 466 112 100 4 chr15 83414485 83414579 -17965942 + L1MA9 LINE L1 6045 6140 -160 781 151 0 48 chr15 83414579 83414597 -17965924 - AluJb SINE Alu 0 312 295 1350 135 65 0 chr15 83414597 83414827 -17965694 - L1MA5 LINE L1 -4 6296 6052 804 89 0 0 chr15 83414829 83414952 -17965569 + (TA)n Simple_repeat Simple_repeat 2 124 0 781 151 0 48 chr15 83414952 83415076 -17965445 - AluJb SINE Alu -18 294 174 600 164 140 9 chr15 83415076 83415282 -17965239 - L1MC4 LINE L1 -661 7381 7103 185 343 96 0 chr15 83415702 83415775 -17964746 + MIR SINE MIR 105 184 -78 * 192 283 21 103 chr15 83415742 83415887 -17964634 - MER5B DNA MER1_type -10 168 36 1264 166 44 105 chr15 83416094 83416134 -17964387 - LTR37A LTR ERV1 -42 384 343 2175 85 10 0 chr15 83416134 83416429 -17964092 - AluSx SINE Alu -14 298 1 1264 166 44 105 chr15 83416429 83416797 -17963724 - LTR37A LTR ERV1 -83 343 1 480 120 0 0 chr15 83417221 83417296 -17963225 - Alu SINE Alu 0 312 238 366 99 308 0 chr15 83417313 83417404 -17963117 - MER58 DNA MER1_type -141 200 82 1473 152 0 42 chr15 83417414 83417678 -17962843 + AluJo SINE Alu 30 282 -30 1730 212 101 2 chr15 83417693 83418118 -17962403 + Cheshire DNA MER1_type 917 1383 -1037 2449 177 42 10 chr15 83418127 83418629 -17961892 - L1MB4 LINE L1 -1 6179 5662 235 231 0 51 chr15 83418636 83418714 -17961807 - L1MB4 LINE L1 -1617 4529 4456 * 11169 203 43 46 chr15 83418699 83419196 -17961325 - L1M3 LINE L1 -516 5903 5406 4438 151 58 91 chr15 83419196 83420304 -17960217 - MER11C LTR ERVK 0 1071 1 11169 203 43 46 chr15 83420304 83420796 -17959725 - L1M3 LINE L1 -1013 5406 4914 1535 153 62 101 chr15 83420796 83420840 -17959681 - MLT1B LTR MaLR 0 390 346 2019 136 3 0 chr15 83420840 83421141 -17959380 + AluSx SINE Alu 1 302 -10 1535 153 62 101 chr15 83421141 83421387 -17959134 - MLT1B LTR MaLR -44 346 118 2045 96 64 0 chr15 83421387 83421668 -17958853 - AluSq SINE Alu -14 299 1 1535 153 62 101 chr15 83421668 83421782 -17958739 - MLT1B LTR MaLR -272 118 1 11169 203 43 46 chr15 83421782 83422318 -17958203 - L1M3 LINE L1 -1505 4914 4378 1588 164 18 4 chr15 83422318 83422592 -17957929 + AluJo SINE Alu 1 278 -34 180 0 0 0 chr15 83422595 83422615 -17957906 + (CAA)n Simple_repeat Simple_repeat 2 21 0 11169 203 43 46 chr15 83422615 83423872 -17956649 - L1M3 LINE L1 -2043 4376 3116 2125 106 7 0 chr15 83423872 83424165 -17956356 + AluSx SINE Alu 1 295 -17 1887 162 3 3 chr15 83424174 83424483 -17956038 + AluJb SINE Alu 1 309 -3 11169 203 43 46 chr15 83424483 83424798 -17955723 - L1M3 LINE L1 -3311 3108 2793 1415 209 30 3 chr15 83424798 83425094 -17955427 + AluJo SINE Alu 1 304 -8 11169 203 43 46 chr15 83425094 83425704 -17954817 - L1M3 LINE L1 -3626 2793 2192 863 125 8 8 chr15 83425756 83425884 -17954637 - MLT1B LTR MaLR -1 389 262 1004 198 59 8 chr15 83425886 83426124 -17954397 - L1M3 LINE L1 -4794 1590 1341 220 133 0 22 chr15 83426137 83426182 -17954339 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 4402 78 5 0 chr15 83426226 83426777 -17953744 + MER41A LTR ERV1 1 554 0 26 0 0 0 chr15 83426803 83426829 -17953692 + AT_rich Low_complexity Low_complexity 1 26 0 1783 161 18 7 chr15 83427044 83427330 -17953191 + MER21B LTR ERV1 1 289 -574 2703 233 44 9 chr15 83427345 83428089 -17952432 - L1MB4 LINE L1 -2136 4010 3241 2293 82 0 7 chr15 83429230 83429536 -17950985 - AluSc SINE Alu -5 304 1 1836 134 18 0 chr15 83429563 83429863 -17950658 + AluSx SINE Alu 1 305 0 445 237 76 107 chr15 83429882 83430275 -17950246 - L1ME4a LINE L1 -16 6105 5725 1913 141 7 0 chr15 83430593 83430884 -17949637 + AluJb SINE Alu 1 293 -19 397 316 72 80 chr15 83430901 83431131 -17949390 - L1ME4a LINE L1 -1214 4932 4703 1953 143 146 11 chr15 83431131 83431508 -17949013 - MSTA LTR MaLR 0 428 1 397 316 72 80 chr15 83431508 83431540 -17948981 - L1ME4a LINE L1 -1443 4703 4672 3093 224 52 40 chr15 83431570 83431746 -17948775 - MER21B LTR ERV1 -78 785 613 2258 95 0 3 chr15 83431746 83432051 -17948470 - AluSc SINE Alu -1 308 5 3093 224 52 40 chr15 83432051 83432650 -17947871 - MER21B LTR ERV1 -250 613 1 227 248 156 28 chr15 83432662 83432803 -17947718 - L1ME4a LINE L1 -1492 4654 4496 2553 35 0 13 chr15 83432807 83433118 -17947403 - AluY SINE Alu -4 307 1 301 261 54 54 chr15 83433306 83433417 -17947104 - L1MC4a LINE L1 -1881 5927 5817 4060 207 47 41 chr15 83433442 83433466 -17947055 - L1MC3 LINE L1 0 8065 8043 2119 119 0 3 chr15 83433466 83433769 -17946752 + AluSg SINE Alu 1 302 -8 4060 207 47 41 chr15 83433769 83436406 -17944115 - L1MC3 LINE L1 -22 8043 5423 2265 102 0 0 chr15 83436406 83436709 -17943812 - AluSx SINE Alu -9 303 1 4060 207 47 41 chr15 83436709 83437216 -17943305 - L1MC3 LINE L1 -2642 5423 4921 1849 163 0 0 chr15 83437216 83437517 -17943004 - AluJb SINE Alu -11 301 1 4060 207 47 41 chr15 83437517 83437649 -17942872 - L1MC3 LINE L1 -3144 4921 4791 1709 191 0 3 chr15 83437649 83437932 -17942589 - AluJo SINE Alu -30 282 1 4060 207 47 41 chr15 83437932 83437943 -17942578 - L1MC3 LINE L1 -3274 4791 4782 2482 80 0 3 chr15 83437943 83438255 -17942266 - AluY SINE Alu 0 311 1 4060 207 47 41 chr15 83438255 83438701 -17941820 - L1MC3 LINE L1 -3283 4782 4340 1661 110 0 4 chr15 83438701 83438928 -17941593 - AluSc SINE Alu -13 296 71 4060 207 47 41 chr15 83438928 83438982 -17941539 - L1MC3 LINE L1 -3725 4340 2534 2364 98 10 0 chr15 83438993 83439298 -17941223 - AluSp SINE Alu -5 308 1 795 138 0 39 chr15 83439302 83439432 -17941089 - FLAM_C SINE Alu -8 125 1 1074 179 71 4 chr15 83439432 83439672 -17940849 - L1MC3 LINE L1 -5119 1307 1052 2393 189 24 17 chr15 83439679 83440139 -17940382 - L1MC3 LINE L1 -5957 469 7 900 254 72 79 chr15 83440124 83440460 -17940061 - L1MC4a LINE L1 -1982 5826 5494 * 2111 113 0 0 chr15 83440460 83440734 -17939787 - AluSg SINE Alu -36 274 1 900 254 72 79 chr15 83440734 83440951 -17939570 - L1MC4a LINE L1 -2314 5494 5277 911 116 43 7 chr15 83441114 83441252 -17939269 + AluJb SINE Alu 154 296 -16 2272 104 3 13 chr15 83441343 83441652 -17938869 - AluSx SINE Alu -6 306 1 1296 218 106 18 chr15 83442432 83442763 -17937758 - MLT1F1 LTR MaLR -3 564 205 691 224 43 142 chr15 83442809 83443161 -17937360 + MLT1C LTR MaLR 51 367 -23 1564 121 0 0 chr15 83443168 83443375 -17937146 - AluSg/x SINE Alu -9 301 95 2212 98 10 3 chr15 83443532 83443828 -17936693 - AluSq SINE Alu -13 300 3 419 259 137 43 chr15 83443901 83444229 -17936292 - L1MEd LINE L1 -4867 1252 894 2523 68 0 3 chr15 83444283 83444592 -17935929 - AluY SINE Alu -3 308 1 1148 187 96 0 chr15 83445126 83445345 -17935176 - AluJo SINE Alu -7 305 66 26 0 0 0 chr15 83445386 83445412 -17935109 + AT_rich Low_complexity Low_complexity 1 26 0 28 48 0 0 chr15 83446143 83446185 -17934336 + AT_rich Low_complexity Low_complexity 1 42 0 204 297 238 0 chr15 83447640 83447741 -17932780 + MIR SINE MIR 25 149 -113 491 235 17 9 chr15 83448460 83448575 -17931946 - LTR56 LTR ERV1 -329 116 1 232 304 118 0 chr15 83450968 83451103 -17929418 + L1M4 LINE L1 61 211 -6331 5629 208 158 47 chr15 83451409 83451737 -17928784 + L1M4 LINE L1 802 1092 -5552 207 0 0 0 chr15 83451737 83451760 -17928761 + (CA)n Simple_repeat Simple_repeat 2 24 0 5629 208 158 47 chr15 83451760 83451842 -17928679 + L1M4 LINE L1 1092 1164 -5480 2061 116 32 4 chr15 83451842 83452119 -17928402 + AluSx SINE Alu 1 285 -27 5629 208 158 47 chr15 83452119 83452350 -17928171 + L1M4 LINE L1 1164 1368 -5276 659 178 0 0 chr15 83452350 83452451 -17928070 + FLAM_A SINE Alu 23 123 -19 5629 208 158 47 chr15 83452451 83453542 -17926979 + L1M4 LINE L1 1368 2337 -4307 2068 90 12 0 chr15 83453542 83453798 -17926723 + AluSx SINE Alu 1 259 -53 5629 208 158 47 chr15 83453798 83454259 -17926262 + L1M4 LINE L1 2337 2746 -3898 2153 153 89 5 chr15 83454259 83454652 -17925869 + MSTB LTR MaLR 1 426 0 5629 208 158 47 chr15 83454652 83455576 -17924945 + L1M4 LINE L1 2746 4384 -2260 3769 207 87 33 chr15 83455620 83456090 -17924431 - L1ME LINE L1 -572 5986 5543 1453 168 66 35 chr15 83456090 83456376 -17924145 - AluJb SINE Alu -17 295 1 3769 207 87 33 chr15 83456376 83457391 -17923130 - L1ME LINE L1 -1015 5543 4414 1705 117 0 12 chr15 83457393 83457633 -17922888 - AluJb SINE Alu -22 290 54 558 275 141 36 chr15 83457641 83457917 -17922604 - L1ME LINE L1 -4681 1859 1555 436 203 91 12 chr15 83457970 83458130 -17922391 + L1MEc LINE L1 1692 1858 -4568 200 219 0 0 chr15 83458550 83458591 -17921930 - MIR SINE MIR -60 148 108 22 0 0 0 chr15 83458761 83458783 -17921738 + AT_rich Low_complexity Low_complexity 1 22 0 396 198 166 19 chr15 83458983 83459109 -17921412 - MIR SINE MIR -65 143 22 2978 79 54 5 chr15 83460831 83461212 -17919309 + MLT2A1 LTR ERVL 1 405 -39 441 0 0 0 chr15 83461212 83461261 -17919260 + (TG)n Simple_repeat Simple_repeat 2 50 0 2978 79 54 5 chr15 83461261 83461284 -17919237 + MLT2A1 LTR ERVL 405 425 -19 453 263 163 28 chr15 83462263 83462583 -17917938 - L2 LINE L2 -1 3312 2950 1246 163 32 47 chr15 83462655 83462932 -17917589 + L1MB8 LINE L1 5842 6114 -64 282 258 84 32 chr15 83462983 83463138 -17917383 - L2 LINE L2 -32 3281 3119 1767 137 4 32 chr15 83463189 83463466 -17917055 - AluJb SINE Alu -43 269 1 408 123 0 0 chr15 83463477 83463542 -17916979 + L1MB8 LINE L1 6114 6178 0 23 0 0 0 chr15 83464149 83464172 -17916349 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr15 83464388 83464422 -17916099 + AT_rich Low_complexity Low_complexity 1 34 0 335 313 96 21 chr15 83464696 83464936 -17915585 - L1M4 LINE L1 -3118 3028 2771 230 200 29 0 chr15 83465045 83465115 -17915406 + L1MB8 LINE L1 6095 6166 -12 1950 120 33 4 chr15 83465117 83465392 -17915129 - AluSg SINE Alu -17 293 11 1915 106 84 4 chr15 83468663 83468937 -17911584 - AluSg SINE Alu -14 296 1 727 186 0 23 chr15 83470780 83470909 -17909612 + FLAM_A SINE Alu 1 126 -7 239 135 0 0 chr15 83471959 83471996 -17908525 - MIR SINE MIR -62 146 110 1188 112 79 0 chr15 83472213 83472427 -17908094 + L1MA8 LINE L1 6060 6290 -1 2795 231 122 27 chr15 83472481 83474261 -17906260 + L1ME2 LINE L1 4215 6154 -10 396 223 122 20 chr15 83474507 83474655 -17905866 - MIR SINE MIR -69 193 31 976 315 136 15 chr15 83476474 83477319 -17903202 + L2 LINE L2 1886 2832 -482 303 214 77 17 chr15 83479526 83479643 -17900878 + L2 LINE L2 3073 3196 -117 288 317 63 36 chr15 83479838 83480059 -17900462 + L2 LINE L2 2328 2554 -760 322 292 67 25 chr15 83480942 83481062 -17899459 + LTR67 LTR ERVL 428 552 -5 301 244 0 110 chr15 83481314 83481365 -17899156 + MIR SINE MIR 57 112 -150 2002 126 7 3 chr15 83481365 83481659 -17898862 - AluJb SINE Alu -17 295 1 301 244 0 110 chr15 83481659 83481734 -17898787 + MIR SINE MIR 112 169 -93 2396 80 7 0 chr15 83481739 83482039 -17898482 - AluSp SINE Alu -11 302 1 559 270 50 40 chr15 83483386 83483608 -17896913 + MIR SINE MIR 28 251 -11 503 307 11 5 chr15 83485233 83485422 -17895099 + MIR SINE MIR 2 191 -71 1743 171 18 7 chr15 83485619 83485905 -17894616 - AluJo SINE Alu -8 304 16 234 186 102 0 chr15 83488067 83488126 -17892395 + L1MB7 LINE L1 6059 6123 -61 1046 161 6 0 chr15 83488126 83488287 -17892234 - AluJb SINE Alu -16 296 135 339 197 0 0 chr15 83488290 83488361 -17892160 + L1MB7 LINE L1 6114 6184 0 35 19 0 19 chr15 83488404 83488423 -17892098 + AT_rich Low_complexity Low_complexity 1 19 -33 2131 85 78 3 chr15 83488423 83488706 -17891815 + AluSc SINE Alu 1 304 -5 35 19 0 19 chr15 83488706 83488739 -17891782 + AT_rich Low_complexity Low_complexity 19 52 0 2155 112 0 7 chr15 83488954 83489248 -17891273 + AluSg SINE Alu 1 292 -18 335 276 26 26 chr15 83489267 83489383 -17891138 + MIR SINE MIR 141 256 -6 1841 170 0 10 chr15 83490435 83490735 -17889786 + AluJo SINE Alu 1 297 -15 1521 171 73 7 chr15 83491395 83491682 -17888839 + AluJo SINE Alu 1 306 -6 215 77 0 26 chr15 83492245 83492284 -17888237 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 180 0 0 0 chr15 83492676 83492696 -17887825 + (A)n Simple_repeat Simple_repeat 1 20 0 358 292 54 15 chr15 83492903 83493033 -17887488 + L2 LINE L2 3136 3270 -2 255 225 0 80 chr15 83493220 83493325 -17887196 + MIR SINE MIR 95 187 -75 184 226 119 71 chr15 83493970 83494054 -17886467 + MIR SINE MIR 86 173 -89 662 248 65 65 chr15 83494240 83494454 -17886067 - MIR SINE MIR -36 226 13 269 253 30 30 chr15 83494820 83494919 -17885602 + MER92B LTR ERV1 516 614 -22 229 261 255 13 chr15 83495517 83495670 -17884851 + MIR SINE MIR 54 243 -19 307 239 68 17 chr15 83495692 83495809 -17884712 - L1ME4a LINE L1 -186 5935 5813 543 172 165 17 chr15 83495841 83495992 -17884529 + L1MB8 LINE L1 5407 5578 -591 1622 142 279 0 chr15 83495998 83496273 -17884248 + L1MB8 LINE L1 5668 5865 -313 1899 105 0 22 chr15 83496273 83496540 -17883981 + AluSq SINE Alu 1 261 -52 1622 142 279 0 chr15 83496540 83496623 -17883898 + L1MB8 LINE L1 5865 6126 -52 630 241 64 24 chr15 83496737 83496986 -17883535 - L1ME4a LINE L1 -154 5967 5709 1779 173 10 0 chr15 83497098 83497398 -17883123 + AluJb SINE Alu 1 303 -9 21 0 0 0 chr15 83497534 83497555 -17882966 + AT_rich Low_complexity Low_complexity 1 21 0 1684 116 99 45 chr15 83497566 83497858 -17882663 + AluSg SINE Alu 2 309 -1 401 260 74 57 chr15 83497991 83498523 -17881998 - L1ME4a LINE L1 -743 5403 4887 2362 86 0 13 chr15 83498559 83498872 -17881649 - AluSq SINE Alu -4 309 1 2040 85 92 0 chr15 83498908 83499180 -17881341 - AluSq SINE Alu -16 297 1 595 312 107 54 chr15 83499366 83499869 -17880652 - L2 LINE L2 -435 2879 2350 260 341 82 15 chr15 83499875 83500010 -17880511 + MIR3 SINE MIR 62 205 -3 302 302 44 30 chr15 83502052 83502212 -17878309 + MIR SINE MIR 33 191 -63 329 246 218 21 chr15 83503152 83503294 -17877227 - MER5B DNA MER1_type 0 178 9 313 296 106 25 chr15 83504454 83504653 -17875868 - L1MEd LINE L1 -3923 2387 2173 2232 114 0 3 chr15 83504661 83504967 -17875554 - AluSx SINE Alu -7 305 1 1144 271 68 36 chr15 83505793 83506019 -17874502 - L1MEd LINE L1 -4579 1731 1514 2063 87 0 14 chr15 83506019 83506294 -17874227 - AluSc SINE Alu 0 309 39 1144 271 68 36 chr15 83506294 83506709 -17873812 - L1MEd LINE L1 -4796 1514 1038 425 339 49 33 chr15 83506794 83507160 -17873361 - L1MEd LINE L1 -5221 898 527 867 118 0 66 chr15 83507563 83507699 -17872822 - FLAM_C SINE Alu -6 127 1 29 0 0 0 chr15 83508123 83508152 -17872369 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr15 83508755 83508778 -17871743 + AT_rich Low_complexity Low_complexity 1 23 0 591 164 95 9 chr15 83509796 83509912 -17870609 - MER105 DNA DNA -27 177 52 1434 150 108 4 chr15 83509918 83510178 -17870343 - AluJo SINE Alu -25 287 1 887 178 7 7 chr15 83510197 83510343 -17870178 - MER58B DNA MER1_type -6 335 190 308 127 18 18 chr15 83510358 83510413 -17870108 - MER105 DNA DNA -149 55 1 1862 164 0 3 chr15 83511475 83511767 -17868754 - AluJb SINE Alu -21 291 1 1209 256 171 7 chr15 83511807 83512233 -17868288 - MLT1J LTR MaLR -8 503 8 301 341 132 34 chr15 83513678 83514250 -17866271 + L2 LINE L2 2607 3230 -42 328 372 28 0 chr15 83514270 83514450 -17866071 + L3 LINE CR1 383 567 -1010 293 363 83 45 chr15 83514751 83515173 -17865348 + L3 LINE CR1 862 1299 -278 215 245 208 9 chr15 83515508 83515614 -17864907 + L2 LINE L2 3186 3312 -1 245 321 101 19 chr15 83516019 83516178 -17864343 - MIR3 SINE MIR -17 191 20 2174 106 7 0 chr15 83516264 83516556 -17863965 + AluSx SINE Alu 7 300 -12 2114 129 3 3 chr15 83517647 83517941 -17862580 - AluSx SINE Alu -18 294 1 713 168 81 29 chr15 83518297 83518470 -17862051 - L1MA8 LINE L1 -42 6249 6068 197 326 16 85 chr15 83518868 83518997 -17861524 + L2 LINE L2 2620 2739 -575 2357 49 7 26 chr15 83519026 83519333 -17861188 - AluY SINE Alu -10 301 1 280 241 0 0 chr15 83520218 83520272 -17860249 + L2 LINE L2 3205 3258 -14 406 323 30 24 chr15 83520353 83520520 -17860001 + MER5B DNA MER1_type 3 170 -8 232 291 165 25 chr15 83520927 83521085 -17859436 - MIR SINE MIR -7 255 76 2758 10 0 3 chr15 83523012 83523308 -17857213 + L1PA3 LINE L1 5861 6155 0 2021 9 0 5 chr15 83525098 83525320 -17855201 - L1PA2 LINE L1 0 6155 5935 590 199 54 142 chr15 83525421 83525601 -17854920 - L1MC4 LINE L1 0 8042 7906 1726 156 0 56 chr15 83525601 83525922 -17854599 - AluJb SINE Alu -9 303 1 590 199 54 142 chr15 83525922 83526093 -17854428 - L1MC4 LINE L1 -136 7906 7722 2900 126 87 114 chr15 83526256 83526358 -17854163 + L1M3 LINE L1 1377 1480 -4904 2304 108 0 19 chr15 83526358 83526674 -17853847 + AluSx SINE Alu 3 312 0 2900 126 87 114 chr15 83526674 83527253 -17853268 + L1M3 LINE L1 1480 2039 -4345 1101 181 257 11 chr15 83527253 83527529 -17852992 + MER2 DNA MER2_type 1 344 -1 1902 116 9 18 chr15 83527531 83527858 -17852663 + L1M3 LINE L1 2039 2362 -4022 1094 99 0 7 chr15 83529906 83530048 -17850473 + AluSq/x SINE Alu 1 141 -172 1252 100 89 5 chr15 83530148 83530338 -17850183 + L1PA11 LINE L1 5968 6173 -1 5777 192 48 25 chr15 83530359 83532093 -17848428 + L1M3 LINE L1 4235 6011 -408 555 195 86 47 chr15 83532093 83532221 -17848300 + FLAM_A SINE Alu 1 133 -9 403 278 179 19 chr15 83532610 83532822 -17847699 - MIR SINE MIR 0 262 17 344 348 120 0 chr15 83532823 83532981 -17847540 + MER91A DNA MER1_type 1 177 -19 6424 131 93 6 chr15 83533487 83534102 -17846419 + L1M4c LINE L1 22 582 -5802 198 0 0 0 chr15 83534102 83534124 -17846397 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 6424 131 93 6 chr15 83534124 83534619 -17845902 + L1M4c LINE L1 582 1228 -5156 5471 214 63 48 chr15 83534722 83536064 -17844457 + L1M4c LINE L1 2469 3790 -2592 1420 201 10 37 chr15 83536064 83536363 -17844158 + AluJo SINE Alu 1 291 -21 363 197 0 0 chr15 83536365 83536426 -17844095 + Alu SINE Alu 235 295 -7 5471 214 63 48 chr15 83536426 83536775 -17843746 + L1M4c LINE L1 3790 4249 -2133 25726 57 10 2 chr15 83536780 83542019 -17838502 + L1P2 LINE L1 4 5545 -609 703 270 48 28 chr15 83542223 83542475 -17838046 + L2 LINE L2 3054 3310 -3 2066 110 65 0 chr15 83542626 83542918 -17837603 + AluSx SINE Alu 1 311 -1 359 303 127 18 chr15 83543409 83543574 -17836947 - MIR SINE MIR -60 202 20 382 330 0 0 chr15 83543658 83543758 -17836763 - L2 LINE L2 0 3313 3214 1118 317 51 28 chr15 83543879 83544352 -17836169 - L2 LINE L2 -337 2977 2494 204 206 95 16 chr15 83544783 83544846 -17835675 + MIR SINE MIR 182 249 -13 2097 107 0 4 chr15 83544978 83545286 -17835235 + AluSg SINE Alu 1 307 0 334 239 22 22 chr15 83546158 83546250 -17834271 + MIR SINE MIR 171 262 0 1756 158 61 10 chr15 83546511 83546808 -17833713 + AluJo SINE Alu 1 312 0 25 0 0 0 chr15 83546870 83546895 -17833626 + AT_rich Low_complexity Low_complexity 1 25 0 2377 84 3 0 chr15 83548111 83548409 -17832112 + AluY SINE Alu 1 299 -12 270 81 0 0 chr15 83548670 83548707 -17831814 + (T)n Simple_repeat Simple_repeat 1 37 0 580 77 13 0 chr15 83548721 83548799 -17831722 + AluS SINE Alu 1 79 -233 791 157 0 0 chr15 83548799 83548914 -17831607 - FLAM_A SINE Alu -18 115 1 4222 150 40 38 chr15 83548933 83549635 -17830886 - L1MA7 LINE L1 -99 6192 5493 1848 178 0 10 chr15 83549635 83549928 -17830593 - AluJb SINE Alu -18 294 5 2351 106 3 0 chr15 83549932 83550235 -17830286 - AluSp SINE Alu -9 304 1 4222 150 40 38 chr15 83550235 83550607 -17829914 - L1MA7 LINE L1 -800 5491 5117 639 264 24 5 chr15 83550607 83550819 -17829702 + L1M4 LINE L1 5079 5294 -852 234 0 0 0 chr15 83550820 83550846 -17829675 + (CA)n Simple_repeat Simple_repeat 2 27 0 314 176 221 7 chr15 83551539 83551675 -17828846 + L1ME3A LINE L1 5911 6075 -95 2256 100 3 0 chr15 83551696 83551995 -17828526 + AluSp SINE Alu 1 300 -13 2475 71 0 3 chr15 83553550 83553860 -17826661 + AluSq SINE Alu 1 309 -4 797 153 0 24 chr15 83554207 83554331 -17826190 + FLAM_C SINE Alu 1 121 -12 289 306 64 25 chr15 83554466 83554701 -17825820 - HAL1b LINE L1 -437 911 668 494 313 83 17 chr15 83554702 83555002 -17825519 - HAL1b LINE L1 -703 645 326 1111 96 0 0 chr15 83555104 83555239 -17825282 - AluSq/x SINE Alu -177 135 1 338 248 16 88 chr15 83555901 83556026 -17824495 - HAL1b LINE L1 0 1348 1233 416 166 117 42 chr15 83557099 83557221 -17823300 - MIR SINE MIR -69 139 58 328 271 56 9 chr15 83557518 83557625 -17822896 + MIR SINE MIR 34 145 -63 605 353 49 70 chr15 83557768 83558236 -17822285 - L2 LINE L2 0 3272 2815 243 317 43 67 chr15 83558535 83558743 -17821778 + L3 LINE CR1 1186 1388 -189 319 169 119 141 chr15 83560221 83560306 -17820215 + L1ME4a LINE L1 5529 5614 -507 1874 165 0 3 chr15 83560306 83560609 -17819912 + AluJo SINE Alu 1 302 -10 319 169 119 141 chr15 83560609 83560700 -17819821 + L1ME4a LINE L1 5614 5701 -420 228 250 267 35 chr15 83560762 83561110 -17819411 + L1ME4a LINE L1 5693 6121 0 361 239 85 0 chr15 83561887 83562017 -17818504 + MER112 DNA MER1_type 31 171 -89 573 120 140 0 chr15 83562027 83562127 -17818394 - FRAM SINE Alu -1 175 62 1119 179 144 45 chr15 83562151 83562687 -17817834 + MLT1G3 LTR MaLR 1 590 0 510 332 110 38 chr15 83564498 83564790 -17815731 - L2 LINE L2 -36 3236 2924 329 305 185 45 chr15 83564966 83565959 -17814562 + L2 LINE L2 596 1727 -1587 2127 100 0 42 chr15 83565971 83566280 -17814241 + AluSx SINE Alu 1 296 -16 2933 189 66 43 chr15 83566675 83567198 -17813323 + L1MC4 LINE L1 7161 7713 -329 1802 137 90 29 chr15 83567198 83567248 -17813273 - MLT1A1 LTR MaLR 0 365 319 1628 161 0 58 chr15 83567248 83567559 -17812962 - AluJo SINE Alu -19 293 1 1802 137 90 29 chr15 83567559 83567852 -17812669 - MLT1A1 LTR MaLR -46 319 1 2933 189 66 43 chr15 83567852 83568190 -17812331 + L1MC4 LINE L1 7713 8042 0 2048 129 26 0 chr15 83568194 83568497 -17812024 - AluSx SINE Alu -1 311 1 258 56 0 0 chr15 83568848 83568884 -17811637 + (A)n Simple_repeat Simple_repeat 1 36 0 2092 133 7 7 chr15 83568935 83569237 -17811284 + AluSq SINE Alu 1 302 -11 592 177 40 32 chr15 83569267 83569391 -17811130 + FLAM_A SINE Alu 1 125 -8 345 274 151 18 chr15 83569395 83569614 -17810907 - L1MC5 LINE L1 -78 7883 7636 263 228 37 99 chr15 83570165 83570327 -17810194 + L1MC4a LINE L1 5631 5782 -339 453 350 81 15 chr15 83570581 83570778 -17809743 + L2 LINE L2 2518 2727 -587 2556 84 0 0 chr15 83570916 83571226 -17809295 - AluSq SINE Alu -3 310 1 658 304 93 44 chr15 83571263 83571544 -17808977 + L1MB7 LINE L1 4037 4303 -1843 2700 13 16 0 chr15 83571544 83571848 -17808673 - AluYb8 SINE Alu -9 309 1 658 304 93 44 chr15 83571848 83572588 -17807933 + L1MB7 LINE L1 4303 5107 -1039 1894 159 3 22 chr15 83572659 83572974 -17807547 - AluSx SINE Alu -3 309 1 453 253 32 38 chr15 83573018 83573329 -17807192 + L1MB7 LINE L1 5256 5603 -2205 1386 127 131 4 chr15 83573349 83573585 -17806936 + AluJb SINE Alu 29 294 -18 1427 168 64 77 chr15 83573616 83574056 -17806465 + L1MB7 LINE L1 5732 6165 -19 331 286 9 0 chr15 83574062 83574174 -17806347 + L1MC4a LINE L1 5816 5928 -1880 527 156 72 78 chr15 83574385 83574565 -17805956 + L1MC5 LINE L1 7017 7195 -766 1018 148 0 44 chr15 83574581 83574763 -17805758 + FRAM SINE Alu 1 174 -2 1529 223 52 33 chr15 83574802 83575259 -17805262 + MLT1F LTR MaLR 62 527 -15 439 203 89 8 chr15 83575473 83575596 -17804925 - MIR SINE MIR -65 197 65 7677 26 0 3 chr15 83576183 83577300 -17803221 - L1PA3 LINE L1 -3 6152 5037 408 294 22 15 chr15 83577428 83577564 -17802957 - MIR SINE MIR -112 150 14 205 359 150 46 chr15 83578221 83578594 -17801927 - L2 LINE L2 -1 3271 2860 2123 241 58 11 chr15 83578616 83579223 -17801298 - L1ME3A LINE L1 -8 6162 5528 225 0 0 0 chr15 83579747 83579772 -17800749 + (CA)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr15 83581075 83581099 -17799422 + AT_rich Low_complexity Low_complexity 1 24 0 795 257 99 9 chr15 83581099 83581321 -17799200 - MIR SINE MIR 0 262 21 573 205 83 0 chr15 83581330 83581486 -17799035 - L1ME3A LINE L1 0 6170 6002 1824 136 7 14 chr15 83582204 83582498 -17798023 - AluSx SINE Alu -20 292 1 2632 51 0 0 chr15 83583234 83583545 -17796976 - AluY SINE Alu 0 311 1 22 115 0 0 chr15 83583634 83583747 -17796774 + AT_rich Low_complexity Low_complexity 1 113 0 2673 36 0 0 chr15 83583927 83584234 -17796287 - AluY SINE Alu -4 307 1 1759 155 0 50 chr15 83585138 83585461 -17795060 - AluSx SINE Alu -5 307 1 21 36 0 0 chr15 83588012 83588040 -17792481 + AT_rich Low_complexity Low_complexity 1 28 0 458 233 0 0 chr15 83588193 83588279 -17792242 + L2 LINE L2 3225 3310 -3 234 229 16 0 chr15 83638701 83638762 -17741759 + MIR SINE MIR 69 130 -132 1901 133 10 7 chr15 83640870 83641164 -17739357 - AluSx SINE Alu -17 295 1 26 30 0 0 chr15 83641172 83641205 -17739316 + AT_rich Low_complexity Low_complexity 1 33 0 2704 214 30 27 chr15 83641213 83641812 -17738709 - L1ME3A LINE L1 -235 5931 5335 233 48 48 0 chr15 83641812 83641854 -17738667 + (TTTG)n Simple_repeat Simple_repeat 1 112 0 1980 137 0 11 chr15 83641854 83642138 -17738383 - AluSx SINE Alu -1 322 1 2704 214 30 27 chr15 83642138 83642174 -17738347 - L1ME3A LINE L1 -830 5336 5293 1718 102 0 0 chr15 83642204 83642420 -17738101 - AluSc SINE Alu -93 216 1 333 0 0 0 chr15 83642447 83642484 -17738037 + (TTCC)n Simple_repeat Simple_repeat 1 37 0 243 154 19 0 chr15 83642534 83642586 -17737935 - Alu SINE Alu -2 300 248 2443 102 0 3 chr15 83643058 83643371 -17737150 + AluSx SINE Alu 1 312 0 2133 147 20 15 chr15 83643413 83643815 -17736706 - L1MB3 LINE L1 -7 6176 5773 539 195 86 47 chr15 83643823 83643951 -17736570 - FLAM_A SINE Alu -9 133 1 2317 182 57 32 chr15 83643951 83644676 -17735845 - L1MB3 LINE L1 -408 5775 5033 193 298 21 32 chr15 83645222 83645316 -17735205 + L2 LINE L2 2971 3063 -209 210 211 0 0 chr15 83645336 83645374 -17735147 + L2 LINE L2 3230 3267 -5 827 122 8 0 chr15 83645898 83646021 -17734500 - FLAM_C SINE Alu -19 124 1 482 249 46 29 chr15 83646260 83646433 -17734088 + MLT1K LTR MaLR 412 587 -1 22 35 0 0 chr15 83647849 83647878 -17732643 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 83647878 83647900 -17732621 + GC_rich Low_complexity Low_complexity 1 22 0 2193 137 0 6 chr15 83647914 83648228 -17732293 - AluSx SINE Alu 0 312 1 421 240 156 28 chr15 83648240 83648419 -17732102 - HAL1 LINE L1 -2032 475 274 389 296 45 85 chr15 83648430 83648606 -17731915 - HAL1 LINE L1 -2333 174 6 468 251 128 59 chr15 83648631 83648818 -17731703 + MIR SINE MIR 1 200 -62 253 282 44 72 chr15 83648887 83649003 -17731518 + MLT1I LTR MaLR 215 326 -83 1820 173 38 0 chr15 83649003 83649170 -17731351 - AluJo SINE Alu -12 300 116 189 0 0 0 chr15 83649170 83649191 -17731330 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1820 173 38 0 chr15 83649191 83649312 -17731209 - AluJo SINE Alu -196 116 1 253 282 44 72 chr15 83649312 83649376 -17731145 + MLT1I LTR MaLR 326 390 -19 2000 145 7 13 chr15 83649735 83650045 -17730476 - AluJo SINE Alu -4 308 1 1588 157 130 4 chr15 83650114 83650376 -17730145 - AluJb SINE Alu -17 295 1 643 282 36 36 chr15 83652877 83653129 -17727392 + L2 LINE L2 3059 3310 -3 2126 106 65 0 chr15 83653280 83653573 -17726948 + AluSx SINE Alu 1 312 0 367 297 127 18 chr15 83654064 83654229 -17726292 - MIR SINE MIR -60 202 20 391 330 0 0 chr15 83654312 83654412 -17726109 - L2 LINE L2 0 3313 3214 1115 306 57 36 chr15 83654533 83655007 -17725514 - L2 LINE L2 -337 2977 2494 207 206 95 16 chr15 83655437 83655500 -17725021 + MIR SINE MIR 182 249 -13 342 0 0 0 chr15 83656444 83656482 -17724039 + (TG)n Simple_repeat Simple_repeat 2 39 0 688 269 24 5 chr15 83656483 83656695 -17723826 - L1M4 LINE L1 -852 5294 5079 4429 150 40 28 chr15 83656695 83657067 -17723454 + L1MA7 LINE L1 5117 5483 -808 2391 105 3 0 chr15 83657067 83657371 -17723150 + AluSp SINE Alu 1 305 -8 1876 186 0 10 chr15 83657375 83657681 -17722840 + AluJb SINE Alu 5 307 -5 4429 150 40 28 chr15 83657681 83658370 -17722151 + L1MA7 LINE L1 5485 6192 -99 814 157 0 0 chr15 83658389 83658504 -17722017 + FLAM_A SINE Alu 1 115 -18 565 76 13 25 chr15 83658504 83658583 -17721938 - AluS SINE Alu -234 79 2 270 81 0 0 chr15 83658598 83658635 -17721886 + (A)n Simple_repeat Simple_repeat 1 37 0 463 101 0 0 chr15 83658790 83658859 -17721662 - Alu SINE Alu -14 298 230 2307 107 0 0 chr15 83659134 83659434 -17721087 + AluSx SINE Alu 5 304 -8 1833 131 11 8 chr15 83660897 83661164 -17719357 + AluJo SINE Alu 26 293 -19 1559 109 39 148 chr15 83661711 83662049 -17718472 - AluJb SINE Alu -1 301 1 313 132 0 0 chr15 83662744 83662797 -17717724 + Alu SINE Alu 249 301 0 708 294 164 21 chr15 83662816 83663610 -17716911 - L2 LINE L2 -269 3044 2141 209 125 0 25 chr15 83663942 83663982 -17716539 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 312 346 68 31 chr15 83664255 83664417 -17716104 + MIR3 SINE MIR 3 170 -38 359 284 68 31 chr15 83664790 83664952 -17715569 - L3 LINE CR1 -3 1574 1407 189 0 0 0 chr15 83665007 83665028 -17715493 + (CA)n Simple_repeat Simple_repeat 1 21 0 463 145 48 97 chr15 83665028 83665152 -17715369 - MER103 DNA DNA -48 118 1 198 0 0 0 chr15 83665264 83665286 -17715235 + (TTTCC)n Simple_repeat Simple_repeat 1 22 0 2265 103 0 0 chr15 83665287 83665568 -17714953 - AluSx SINE Alu -31 281 1 994 279 175 36 chr15 83665568 83665879 -17714642 - L3 LINE CR1 -193 1384 1118 1584 171 13 143 chr15 83665879 83666334 -17714187 + MSTD LTR MaLR 1 396 0 994 279 175 36 chr15 83666334 83666577 -17713944 - L3 LINE CR1 -459 1118 753 211 297 68 14 chr15 83667506 83667580 -17712941 + MIR SINE MIR 107 184 -78 505 278 29 37 chr15 83667906 83668147 -17712374 + L1MC4a LINE L1 5693 5931 -1877 704 194 0 32 chr15 83668159 83668283 -17712238 + FLAM_A SINE Alu 1 120 -13 2386 112 0 0 chr15 83668680 83668984 -17711537 - AluSx SINE Alu -6 306 3 662 332 71 35 chr15 83669024 83669184 -17711337 - L2 LINE L2 -912 2402 2249 1671 179 10 36 chr15 83669184 83669491 -17711030 + AluJo SINE Alu 1 299 -13 2032 113 0 10 chr15 83669491 83669782 -17710739 + AluSx SINE Alu 25 312 0 662 332 71 35 chr15 83669782 83670225 -17710296 - L2 LINE L2 -1064 2250 1776 2161 98 41 14 chr15 83671194 83671330 -17709191 + AluSx SINE Alu 1 132 -180 2172 108 3 10 chr15 83671330 83671627 -17708894 + AluSg SINE Alu 1 295 -15 2161 98 41 14 chr15 83671627 83671785 -17708736 + AluSx SINE Alu 132 303 -9 1715 158 3 32 chr15 83672542 83672827 -17707694 - AluJo SINE Alu -35 277 1 2317 101 3 0 chr15 83672838 83673136 -17707385 - AluSx SINE Alu -13 299 1 700 166 108 40 chr15 83673137 83673394 -17707127 - MER33 DNA MER1_type -219 105 1 2294 81 3 0 chr15 83673476 83673879 -17706642 + AluSx SINE Alu 1 404 0 4099 129 31 3 chr15 83674561 83675196 -17705325 + MER39B LTR ERV1 1 653 0 321 272 203 28 chr15 83675668 83675885 -17704636 - L1MC4a LINE L1 -1958 5850 5596 1874 168 0 14 chr15 83675894 83676180 -17704341 + AluJo SINE Alu 1 282 -30 325 326 72 33 chr15 83676212 83676393 -17704128 + L1ME LINE L1 723 910 -5160 965 161 21 36 chr15 83676702 83676781 -17703740 - MER5A DNA MER1_type 0 189 110 1756 147 0 4 chr15 83676781 83677040 -17703481 - AluSx SINE Alu -14 298 41 965 161 21 36 chr15 83677040 83677152 -17703369 - MER5A DNA MER1_type -79 110 1 2122 103 0 67 chr15 83677178 83677509 -17703012 + AluSc SINE Alu 1 309 0 319 149 75 15 chr15 83677970 83678037 -17702484 + MIR SINE MIR 91 161 -101 278 178 0 0 chr15 83678029 83678074 -17702447 + L2 LINE L2 3210 3254 -18 * 1538 146 51 29 chr15 83678673 83678810 -17701711 + MLT1A1 LTR MaLR 10 142 -223 2102 135 0 3 chr15 83678810 83679113 -17701408 + AluJo SINE Alu 6 307 -5 1538 146 51 29 chr15 83679113 83679290 -17701231 + MLT1A1 LTR MaLR 142 331 -34 326 270 270 14 chr15 83679430 83679578 -17700943 - MER5A DNA MER1_type -1 188 3 207 252 78 58 chr15 83679885 83679988 -17700533 - MIR3 SINE MIR -91 117 13 242 305 130 49 chr15 83680015 83680207 -17700314 + L2 LINE L2 1746 1960 -1354 378 0 0 0 chr15 83680207 83680249 -17700272 + (TG)n Simple_repeat Simple_repeat 1 42 0 242 305 130 49 chr15 83680249 83680279 -17700242 + L2 LINE L2 1960 1986 -1328 2243 124 10 0 chr15 83681166 83681473 -17699048 - AluSx SINE Alu -2 310 1 306 387 19 0 chr15 83681606 83681761 -17698760 + MIR3 SINE MIR 51 208 0 183 299 108 52 chr15 83682012 83682243 -17698278 + L2 LINE L2 2861 3104 -168 2344 85 3 0 chr15 83682294 83682603 -17697918 - AluSp SINE Alu 0 310 1 247 236 55 27 chr15 83683719 83683829 -17696692 - L2 LINE L2 -160 3112 3000 325 75 50 125 chr15 83684019 83684099 -17696422 - MER69 DNA AcHobo -2380 146 73 2505 91 0 0 chr15 83684563 83684872 -17695649 + AluSx SINE Alu 1 309 -3 350 220 129 76 chr15 83685051 83685183 -17695338 + MIR3 SINE MIR 41 179 -29 1073 154 0 29 chr15 83685360 83685524 -17694997 + AluJo SINE Alu 121 281 -31 252 0 0 0 chr15 83685524 83685552 -17694969 + (CTAAA)n Simple_repeat Simple_repeat 3 30 0 948 122 8 0 chr15 83685567 83685698 -17694823 + AluJb SINE Alu 7 138 -174 23 54 0 0 chr15 83685718 83685755 -17694766 + AT_rich Low_complexity Low_complexity 1 37 0 1452 134 63 22 chr15 83685760 83686181 -17694340 + LTR54 LTR ERV1 1 510 0 377 126 137 11 chr15 83686192 83686287 -17694234 + L1MB4 LINE L1 6074 6180 0 1290 149 12 56 chr15 83686319 83686388 -17694133 + AluJo SINE Alu 59 130 -182 821 102 0 8 chr15 83686388 83686515 -17694006 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 261 0 0 0 chr15 83686516 83686545 -17693976 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 1290 149 12 56 chr15 83686545 83686722 -17693799 + AluJo SINE Alu 129 296 -16 2303 120 0 0 chr15 83686727 83687035 -17693486 + AluSx SINE Alu 3 310 -2 188 277 21 0 chr15 83688040 83688087 -17692434 - MER5A DNA MER1_type 0 189 142 669 265 53 0 chr15 83688256 83688426 -17692095 - MER5A DNA MER1_type -9 180 2 557 230 120 24 chr15 83689060 83689269 -17691252 + MIR SINE MIR 1 229 -33 247 277 0 0 chr15 83689596 83689643 -17690878 - MIR SINE MIR 0 262 216 717 197 0 0 chr15 83689670 83689802 -17690719 - MIR SINE MIR -125 137 6 224 344 0 16 chr15 83689815 83689879 -17690642 - MIR SINE MIR -180 82 20 2321 111 0 0 chr15 83690014 83690312 -17690209 + AluSx SINE Alu 1 298 -14 657 200 7 7 chr15 83690335 83690475 -17690046 - L1MA10 LINE L1 0 6334 6195 806 193 17 66 chr15 83690638 83690819 -17689702 - AluJb SINE Alu -140 172 1 225 0 0 0 chr15 83690831 83690856 -17689665 + (CCTG)n Simple_repeat Simple_repeat 2 26 0 482 82 0 14 chr15 83690863 83690936 -17689585 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 810 211 67 0 chr15 83690937 83691117 -17689404 - AluJb SINE Alu -5 307 116 342 311 106 19 chr15 83691142 83691614 -17688907 - L1MEc LINE L1 -4688 1696 1184 * 2168 262 24 20 chr15 83691587 83692247 -17688274 - L1MEc LINE L1 -5698 865 203 2159 94 13 13 chr15 83692258 83692556 -17687965 - AluY SINE Alu -13 298 1 361 214 0 0 chr15 83692567 83692637 -17687884 - L1MB8 LINE L1 0 6178 6109 4091 145 12 7 chr15 83692639 83693330 -17687191 + L1MA4 LINE L1 5580 6273 -27 300 81 290 0 chr15 83693334 83693396 -17687125 - MADE1 DNA Mariner 0 80 1 180 0 0 0 chr15 83693428 83693448 -17687073 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1982 109 0 36 chr15 83693455 83693758 -17686763 - AluSg SINE Alu -18 292 1 1997 194 26 0 chr15 83693759 83694145 -17686376 - L1MB8 LINE L1 -54 6124 5729 1367 69 12 0 chr15 83694148 83694321 -17686200 - AluSq SINE Alu -138 175 1 1217 195 115 9 chr15 83694322 83694727 -17685794 - L1MB8 LINE L1 -600 5584 5134 253 135 79 90 chr15 83694736 83694825 -17685696 + MER113 DNA MER1_type? 131 218 -303 23 0 0 0 chr15 83694864 83694887 -17685634 + AT_rich Low_complexity Low_complexity 1 23 0 284 317 50 37 chr15 83695269 83695430 -17685091 + MER5A DNA MER1_type 1 163 -26 249 308 119 14 chr15 83696021 83696164 -17684357 + MIR SINE MIR 94 251 -11 1964 140 0 0 chr15 83696464 83696764 -17683757 - AluJb SINE Alu -12 300 1 225 290 109 36 chr15 83697556 83697749 -17682772 - MIR SINE MIR -35 227 21 241 315 46 0 chr15 83697894 83698002 -17682519 + MLT1K LTR MaLR 196 308 -280 765 99 0 119 chr15 83698648 83698799 -17681722 - AluJo SINE Alu -178 134 2 205 306 154 47 chr15 83698809 83699362 -17681159 + L2 LINE L2 1494 2105 -1209 387 302 119 60 chr15 83699801 83700231 -17680290 + L2 LINE L2 2815 3269 -3 1623 126 76 0 chr15 83700719 83700996 -17679525 + AluJb SINE Alu 5 302 -10 1037 103 0 22 chr15 83700996 83701180 -17679341 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 299 333 42 74 chr15 83701282 83701498 -17679023 + L2 LINE L2 3008 3216 -56 307 130 14 14 chr15 83701547 83701616 -17678905 + GA-rich Low_complexity Low_complexity 1 69 0 717 323 129 9 chr15 83701774 83702124 -17678397 - MLT1L LTR MaLR -24 591 200 229 265 0 0 chr15 83702108 83702157 -17678364 - LTR67 LTR ERVL -401 156 108 * 2777 87 5 18 chr15 83702294 83702674 -17677847 + THE1C LTR MaLR 1 375 0 1071 225 111 27 chr15 83702734 83702940 -17677581 + MLT1J LTR MaLR 8 248 -263 714 191 0 0 chr15 83702940 83703050 -17677471 - MER81 DNA DNA 0 114 5 1071 225 111 27 chr15 83703050 83703141 -17677380 + MLT1J LTR MaLR 248 330 -181 1949 123 38 0 chr15 83703350 83703643 -17676878 - AluSx SINE Alu -8 304 1 645 170 0 18 chr15 83703645 83703757 -17676764 - FRAM SINE Alu -15 161 52 1020 183 0 64 chr15 83703783 83703814 -17676707 - AluJo SINE Alu -92 220 189 2249 100 85 15 chr15 83703814 83704154 -17676367 - THE1B LTR MaLR 0 364 1 1020 183 0 64 chr15 83704154 83704357 -17676164 - AluJo SINE Alu -123 189 1 310 236 0 0 chr15 83704357 83704429 -17676092 + MLT1J LTR MaLR 438 509 -2 286 238 60 0 chr15 83705474 83705558 -17674963 + MIR SINE MIR 102 190 -72 1928 167 164 8 chr15 83705581 83705965 -17674556 - MLT1F LTR MaLR -98 444 1 294 246 0 14 chr15 83706086 83706155 -17674366 + LTR67 LTR ERVL 487 554 -3 201 345 88 47 chr15 83707033 83707181 -17673340 + MIR3 SINE MIR 4 157 -51 1331 261 72 43 chr15 83707229 83707716 -17672805 - MLT1L LTR MaLR 0 615 115 855 163 0 0 chr15 83707991 83708132 -17672389 + FLAM_C SINE Alu 1 141 -2 390 184 107 10 chr15 83708427 83708530 -17671991 - LTR33A LTR ERVL 0 523 411 2296 130 43 74 chr15 83708544 83708924 -17671597 + MSTB1 LTR MaLR 1 366 -66 1858 138 17 0 chr15 83708924 83709222 -17671299 - AluJb SINE Alu -9 303 1 2296 130 43 74 chr15 83709222 83709287 -17671234 + MSTB1 LTR MaLR 366 432 0 312 216 81 0 chr15 83709431 83709505 -17671016 - LTR33A LTR ERVL -361 162 83 567 322 87 17 chr15 83709575 83709805 -17670716 + MIR SINE MIR 11 256 -6 220 204 0 0 chr15 83709815 83709859 -17670662 + (CAT)n Simple_repeat Simple_repeat 3 46 0 633 268 22 53 chr15 83710280 83710543 -17669978 + L2 LINE L2 2754 3006 -266 406 213 140 52 chr15 83710552 83710688 -17669833 - MLT1K LTR MaLR -6 582 435 248 279 0 16 chr15 83710688 83710749 -17669772 - MLT1K LTR MaLR -340 248 189 330 247 96 0 chr15 83710996 83711069 -17669452 + L2 LINE L2 3134 3213 -59 417 286 74 23 chr15 83711626 83711801 -17668720 + MIR SINE MIR 9 192 -70 364 371 66 14 chr15 83712450 83712736 -17667785 - L1M4 LINE L1 -1771 4375 4075 205 241 121 0 chr15 83713041 83713099 -17667422 + MIR SINE MIR 150 214 -48 705 252 14 0 chr15 83713425 83713572 -17666949 - AluJ SINE Alu -39 273 125 380 213 0 27 chr15 83713580 83713655 -17666866 + L1MC4 LINE L1 6636 6708 -1334 775 200 0 15 chr15 83713656 83713791 -17666730 - AluJ SINE Alu -169 133 1 221 204 82 0 chr15 83713897 83713946 -17666575 - L2 LINE L2 -10 3303 3251 * 839 237 63 0 chr15 83713917 83714107 -17666414 - MIR SINE MIR -28 234 33 2211 151 22 3 chr15 83715039 83715397 -17665124 - MLT1A1 LTR MaLR 0 365 1 467 180 33 8 chr15 83715398 83715520 -17665001 + L1MC3 LINE L1 7660 7784 -1 356 311 98 11 chr15 83716307 83716490 -17664031 - L3 LINE CR1 -96 1481 1283 532 244 65 0 chr15 83716573 83716696 -17663825 - L3 LINE CR1 -276 1301 1171 1282 160 12 85 chr15 83716912 83717243 -17663278 - AluJo SINE Alu -5 307 1 745 223 105 142 chr15 83717852 83717974 -17662547 + MLT1J LTR MaLR 1 126 -385 1468 173 72 0 chr15 83717974 83718252 -17662269 + AluJb SINE Alu 1 298 -14 745 223 105 142 chr15 83718252 83718354 -17662167 + MLT1J LTR MaLR 126 230 -281 812 185 144 0 chr15 83718354 83718549 -17661972 - MER58A DNA MER1_type -1 223 1 745 223 105 142 chr15 83718549 83718706 -17661815 + MLT1J LTR MaLR 230 364 -147 1591 134 78 7 chr15 83718706 83718989 -17661532 + AluJb SINE Alu 9 311 -1 745 223 105 142 chr15 83718989 83719099 -17661422 + MLT1J LTR MaLR 364 476 -35 1750 93 112 11 chr15 83720137 83720406 -17660115 + AluJb SINE Alu 2 297 -15 1644 165 28 3 chr15 83720989 83721280 -17659241 + AluJo SINE Alu 11 308 -4 337 224 172 29 chr15 83721350 83721524 -17658997 - MLT1K LTR MaLR 0 588 390 284 316 15 48 chr15 83721683 83721880 -17658641 - MLT1K LTR MaLR -355 233 42 700 267 86 30 chr15 83721993 83722225 -17658296 - MIR SINE MIR -7 255 11 25 0 0 0 chr15 83722290 83722315 -17658206 + AT_rich Low_complexity Low_complexity 1 25 0 2533 215 52 7 chr15 83722324 83722887 -17657634 + MLT1G LTR MaLR 1 588 -2 616 278 52 46 chr15 83723590 83723939 -17656582 - HAL1 LINE L1 -104 2403 2053 1744 176 0 37 chr15 83723939 83724336 -17656185 - AluJo SINE Alu 0 385 1 713 158 89 6 chr15 83724368 83724526 -17655995 - MER104 DNA Tc2 0 180 10 518 131 102 15 chr15 83724612 83724749 -17655772 - L1MB7 LINE L1 0 6184 6036 1898 141 0 0 chr15 83724783 83725099 -17655422 - AluSx SINE Alu 0 316 1 2902 193 32 0 chr15 83725099 83725694 -17654827 - L1M4 LINE L1 -1241 4905 4292 1149 215 155 21 chr15 83725740 83726075 -17654446 - HAL1 LINE L1 -568 1939 1560 957 224 5 10 chr15 83726077 83726310 -17654211 - AluJo SINE Alu 0 309 78 27 0 0 0 chr15 83726310 83726337 -17654184 + AT_rich Low_complexity Low_complexity 1 27 0 1179 147 6 0 chr15 83726350 83726527 -17653994 + AluSx SINE Alu 2 179 -133 387 190 120 89 chr15 83726690 83726781 -17653740 + L1ME4a LINE L1 5956 6056 -65 2489 68 0 0 chr15 83726781 83727091 -17653430 - AluY SINE Alu -1 310 1 387 190 120 89 chr15 83727091 83727157 -17653364 + L1ME4a LINE L1 6056 6118 -3 625 260 133 18 chr15 83728227 83728254 -17652267 - L1ME3 LINE L1 -199 5963 5940 960 120 0 0 chr15 83728254 83728387 -17652134 - FLAM_C SINE Alu 0 133 1 625 260 133 18 chr15 83728387 83729185 -17651336 - L1ME3 LINE L1 -222 5940 5038 3295 211 17 28 chr15 83729187 83730008 -17650513 + L1ME2 LINE L1 5328 6139 -25 778 158 8 0 chr15 83730059 83730179 -17650342 - FLAM_A SINE Alu -9 124 4 358 243 81 67 chr15 83730207 83730417 -17650104 + L1MC4 LINE L1 7826 8038 -4 243 311 143 22 chr15 83730548 83730704 -17649817 - MIR SINE MIR -50 212 35 201 250 261 11 chr15 83731362 83731454 -17649067 - L2 LINE L2 -14 3299 3185 598 223 160 50 chr15 83732000 83732226 -17648295 + MIR SINE MIR 16 262 0 26 0 0 0 chr15 83732366 83732392 -17648129 + AT_rich Low_complexity Low_complexity 1 26 0 2167 103 0 16 chr15 83732476 83732787 -17647734 + AluSp SINE Alu 1 306 -7 1567 153 20 24 chr15 83733342 83733636 -17646885 + AluJo SINE Alu 5 297 -15 1639 180 0 7 chr15 83734004 83734309 -17646212 - AluJo SINE Alu -9 303 1 373 200 150 20 chr15 83734516 83734616 -17645905 - L2 LINE L2 0 3313 3201 381 278 12 35 chr15 83735132 83735268 -17645253 - MER103 DNA DNA -1 165 32 1317 140 63 0 chr15 83735268 83735489 -17645032 - MER46A DNA MER2_type -1 235 1 381 278 12 35 chr15 83735489 83735521 -17645000 - MER103 DNA DNA -134 32 1 256 264 0 0 chr15 83736176 83736229 -17644292 - L2 LINE L2 -10 3262 3210 23 33 0 0 chr15 83738144 83738174 -17642347 + GC_rich Low_complexity Low_complexity 1 30 0 354 286 175 7 chr15 83738406 83738560 -17641961 + MIR SINE MIR 47 226 -36 21 95 0 0 chr15 83738724 83738787 -17641734 + AT_rich Low_complexity Low_complexity 1 63 0 242 190 35 35 chr15 83738910 83738968 -17641553 - L1ME4a LINE L1 -107 6014 5957 273 98 0 0 chr15 83738975 83739016 -17641505 + (CA)n Simple_repeat Simple_repeat 2 42 0 273 163 250 22 chr15 83739016 83739108 -17641413 - L1ME4a LINE L1 -398 5723 5611 449 240 31 0 chr15 83740071 83740167 -17640354 + MER45A DNA AcHobo 2 100 -78 2005 108 3 10 chr15 83740167 83740463 -17640058 - AluSx SINE Alu -18 294 1 834 123 0 39 chr15 83740465 83740595 -17639926 - AluJo/FLAM SINE Alu -186 126 2 383 205 0 24 chr15 83740596 83740679 -17639842 + MER45A DNA AcHobo 98 178 0 1962 108 4 4 chr15 83741099 83741414 -17639107 + AluSg SINE Alu 1 315 0 352 239 22 22 chr15 83742283 83742375 -17638146 + MIR SINE MIR 171 262 0 1626 158 61 10 chr15 83742636 83742933 -17637588 + AluJo SINE Alu 1 312 0 25 0 0 0 chr15 83742995 83743020 -17637501 + AT_rich Low_complexity Low_complexity 1 25 0 2518 73 0 19 chr15 83744236 83744549 -17635972 + AluY SINE Alu 1 307 -4 362 234 63 18 chr15 83744553 83744593 -17635928 - L1ME4a LINE L1 -38 6083 6046 2271 120 0 0 chr15 83744593 83744901 -17635620 + AluSg SINE Alu 1 308 -2 362 234 63 18 chr15 83744901 83744971 -17635550 - L1ME4a LINE L1 -75 6046 5968 274 272 136 7 chr15 83745320 83745467 -17635054 + L3 LINE CR1 1300 1465 -112 262 275 117 50 chr15 83745658 83745778 -17634743 + MIR SINE MIR 19 146 -62 2879 80 11 80 chr15 83746302 83746572 -17633949 - MSTC LTR MaLR 0 428 202 2151 135 0 0 chr15 83746572 83746868 -17633653 + AluSx SINE Alu 3 298 -14 2879 80 11 80 chr15 83746868 83747057 -17633464 - MSTC LTR MaLR -226 202 1 1090 201 148 3 chr15 83747436 83747719 -17632802 - MER33 DNA MER1_type 0 324 1 2448 44 41 3 chr15 83748819 83749114 -17631407 - AluY SINE Alu -5 306 1 252 0 0 0 chr15 83749116 83749144 -17631377 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2079 124 3 0 chr15 83749146 83749428 -17631093 - AluSx SINE Alu -29 283 1 22 70 0 0 chr15 83749480 83749523 -17630998 + AT_rich Low_complexity Low_complexity 1 43 0 229 215 51 51 chr15 83749550 83749629 -17630892 - L1ME4a LINE L1 -75 6046 5968 2037 142 3 3 chr15 83749642 83749938 -17630583 + AluJo SINE Alu 1 296 -16 1985 143 17 0 chr15 83750491 83750791 -17629730 + AluSx SINE Alu 1 305 -7 2246 111 0 0 chr15 83750791 83751088 -17629433 + AluSp SINE Alu 3 299 -14 486 130 0 0 chr15 83751210 83751287 -17629234 - L1MA2 LINE L1 0 6304 6228 791 131 0 0 chr15 83751287 83751394 -17629127 - U6 snRNA snRNA 0 107 1 757 302 91 26 chr15 83751417 83751834 -17628687 - L2 LINE L2 -1 3312 2869 1897 168 0 0 chr15 83751909 83752200 -17628321 + AluJo SINE Alu 1 291 -21 203 167 0 21 chr15 83752208 83752256 -17628265 + GA-rich Low_complexity Low_complexity 2 48 0 605 191 0 0 chr15 83752490 83752595 -17627926 - U6 snRNA snRNA -2 105 1 23 0 0 0 chr15 83752604 83752627 -17627894 + AT_rich Low_complexity Low_complexity 1 23 0 1936 148 3 13 chr15 83752696 83752999 -17627522 - AluJo SINE Alu -12 300 1 275 253 11 21 chr15 83753374 83753469 -17627052 + CT-rich Low_complexity Low_complexity 82 175 0 2434 84 0 0 chr15 83754078 83754375 -17626146 - AluY SINE Alu -14 297 1 1258 172 57 0 chr15 83754472 83754681 -17625840 + AluSx SINE Alu 1 221 -91 540 261 28 0 chr15 83754752 83754894 -17625627 + MIR SINE MIR 15 160 -102 25 51 0 0 chr15 83754936 83754975 -17625546 + AT_rich Low_complexity Low_complexity 1 39 0 2036 70 7 0 chr15 83755012 83755284 -17625237 - L1MA2 LINE L1 0 6304 6031 320 293 159 5 chr15 83755362 83755570 -17624951 - MIR SINE MIR -3 259 20 2350 106 0 3 chr15 83755773 83756084 -17624437 + AluSq SINE Alu 1 310 -3 1932 113 92 3 chr15 83756517 83756800 -17623721 + AluSx SINE Alu 1 308 -4 516 249 26 25 chr15 83757010 83757221 -17623300 - MIR3 SINE MIR -40 222 7 918 208 0 0 chr15 83758755 83758904 -17621617 - AluJb SINE Alu -39 273 125 307 216 0 27 chr15 83758908 83758982 -17621539 + L1MC4 LINE L1 6632 6703 -1339 264 162 15 59 chr15 83758992 83759060 -17621461 - LTR66 LTR ERVL -171 439 375 587 197 176 0 chr15 83759653 83759795 -17620726 - L1ME3A LINE L1 -71 6099 5933 1448 40 40 45 chr15 83760852 83761051 -17619470 - L1PA3 LINE L1 0 6155 5958 1715 181 38 3 chr15 83761721 83762013 -17618508 + AluJo SINE Alu 1 302 -10 25 51 0 0 chr15 83762272 83762311 -17618210 + AT_rich Low_complexity Low_complexity 1 39 0 341 231 31 62 chr15 83762490 83762620 -17617901 - MLT1K LTR MaLR 0 588 463 271 367 0 9 chr15 83762746 83762855 -17617666 - MLT1K LTR MaLR -342 246 139 * 286 240 280 0 chr15 83762829 83762929 -17617592 - MLT1K LTR MaLR -355 233 106 1067 254 79 25 chr15 83762986 83763301 -17617220 + MLT1J2 LTR MaLR 1 332 -118 293 265 24 0 chr15 83763994 83764077 -17616444 + MLT1K LTR MaLR 504 588 0 504 196 43 65 chr15 83764348 83764486 -17616035 + MER21B LTR ERV1 98 232 -631 310 28 0 0 chr15 83764494 83764530 -17615991 + U2 snRNA snRNA 1 36 -152 * 1749 196 98 76 chr15 83764526 83765066 -17615455 + MER21B LTR ERV1 221 772 -91 622 122 0 0 chr15 83765071 83765161 -17615360 + FLAM SINE Alu 38 127 -16 320 247 32 21 chr15 83765208 83765301 -17615220 + MIR SINE MIR 169 262 0 277 239 11 34 chr15 83766989 83767077 -17613444 - MIR SINE MIR -114 148 63 2152 99 0 3 chr15 83767264 83767590 -17612931 + AluSc SINE Alu 1 309 0 294 259 47 47 chr15 83767599 83767684 -17612837 + L2 LINE L2 3186 3270 -2 2291 102 0 7 chr15 83767715 83768019 -17612502 + AluSx SINE Alu 1 302 -10 318 269 56 56 chr15 83768849 83769009 -17611512 + MIR3 SINE MIR 22 181 -27 2374 89 0 10 chr15 83769242 83769545 -17610976 + AluSp SINE Alu 1 300 -13 23 0 0 0 chr15 83769616 83769639 -17610882 + AT_rich Low_complexity Low_complexity 1 23 0 2060 141 0 7 chr15 83769642 83769941 -17610580 + AluJo SINE Alu 1 297 -15 2445 123 66 12 chr15 83769944 83770287 -17610234 + Tigger3(Golem) DNA MER2_type 2384 2754 -275 2237 117 7 3 chr15 83770287 83770595 -17609926 - AluSx SINE Alu -3 309 1 2445 123 66 12 chr15 83770595 83770659 -17609862 + Tigger3(Golem) DNA MER2_type 2754 2813 -216 1615 173 30 27 chr15 83770659 83770959 -17609562 + AluJo SINE Alu 2 302 -10 232 238 0 0 chr15 83771304 83771346 -17609175 + Alu SINE Alu 137 178 -125 1246 214 33 45 chr15 83771437 83771519 -17609002 + L1ME2 LINE L1 5822 5903 -261 1877 143 13 33 chr15 83771519 83771820 -17608701 + AluJo SINE Alu 3 297 -15 1246 214 33 45 chr15 83771820 83772074 -17608447 + L1ME2 LINE L1 5903 6154 -10 2301 90 20 3 chr15 83772153 83772453 -17608068 - AluSq SINE Alu -8 305 1 528 197 65 30 chr15 83772647 83772810 -17607711 + L1ME3 LINE L1 6014 6160 -2 325 272 121 55 chr15 83772827 83773206 -17607315 + L1MEd LINE L1 802 1205 -4914 2007 153 10 7 chr15 83773229 83773529 -17606992 - AluJo SINE Alu -11 301 1 1720 262 32 41 chr15 83773530 83774213 -17606308 - HAL1 LINE L1 -1199 1308 632 1777 98 4 0 chr15 83774361 83774595 -17605926 + AluSp SINE Alu 66 300 -13 2510 74 0 3 chr15 83776151 83776463 -17604058 + AluSq SINE Alu 1 311 -2 791 153 0 24 chr15 83776810 83776934 -17603587 + FLAM_C SINE Alu 1 121 -12 378 306 64 25 chr15 83777069 83777304 -17603217 - HAL1b LINE L1 -437 911 668 959 305 65 24 chr15 83777305 83777764 -17602757 - HAL1b LINE L1 -703 645 168 2396 104 0 0 chr15 83777769 83778078 -17602443 - AluSx SINE Alu -3 309 1 272 248 16 88 chr15 83778740 83778865 -17601656 - HAL1b LINE L1 0 1348 1233 372 162 108 45 chr15 83779938 83780049 -17600472 - MIR SINE MIR -75 187 70 290 271 56 9 chr15 83780357 83780464 -17600057 + MIR SINE MIR 34 145 -63 398 353 49 75 chr15 83780607 83781077 -17599444 - L2 LINE L2 0 3272 2815 186 346 34 58 chr15 83781376 83781584 -17598937 + L3 LINE CR1 1186 1388 -189 270 169 119 141 chr15 83783061 83783146 -17597375 + L1ME4a LINE L1 5529 5614 -507 1893 162 0 3 chr15 83783146 83783449 -17597072 + AluJo SINE Alu 1 302 -10 270 169 119 141 chr15 83783449 83783540 -17596981 + L1ME4a LINE L1 5614 5701 -420 327 241 254 51 chr15 83783580 83783950 -17596571 + L1ME4a LINE L1 5677 6121 0 421 234 103 0 chr15 83784713 83784858 -17595663 + MER112 DNA MER1_type 12 171 -89 577 130 140 0 chr15 83784868 83784968 -17595553 - FRAM SINE Alu -1 175 62 1317 174 144 45 chr15 83784992 83785528 -17594993 + MLT1G3 LTR MaLR 1 590 0 235 274 137 0 chr15 83785528 83785600 -17594921 + MER112 DNA MER1_type 179 260 0 424 328 112 38 chr15 83787339 83787626 -17592895 - L2 LINE L2 -36 3236 2929 2179 99 0 42 chr15 83788809 83789121 -17591400 + AluSx SINE Alu 1 299 -13 3258 189 66 43 chr15 83789518 83790041 -17590480 + L1MC4 LINE L1 7161 7713 -329 1841 137 90 29 chr15 83790041 83790091 -17590430 - MLT1A1 LTR MaLR 0 365 319 1623 161 0 58 chr15 83790091 83790402 -17590119 - AluJo SINE Alu -19 293 1 1841 137 90 29 chr15 83790402 83790695 -17589826 - MLT1A1 LTR MaLR -46 319 1 3258 189 66 43 chr15 83790695 83791033 -17589488 + L1MC4 LINE L1 7713 8042 0 2143 119 26 0 chr15 83791037 83791340 -17589181 - AluSx SINE Alu -1 311 1 276 53 0 0 chr15 83791691 83791729 -17588792 + (A)n Simple_repeat Simple_repeat 1 38 0 2147 126 7 7 chr15 83791780 83792082 -17588439 + AluSq SINE Alu 1 302 -11 588 177 40 32 chr15 83792112 83792236 -17588285 + FLAM_A SINE Alu 1 125 -8 310 269 151 18 chr15 83792240 83792459 -17588062 - L1MC5 LINE L1 -78 7883 7636 326 244 33 89 chr15 83793009 83793189 -17587332 + L1MC5 LINE L1 5629 5798 -323 401 349 85 11 chr15 83793427 83793616 -17586905 + L2 LINE L2 2518 2720 -594 2441 88 0 0 chr15 83793762 83794057 -17586464 - AluSq SINE Alu -18 295 1 706 304 98 45 chr15 83794094 83794377 -17586144 + L1MB7 LINE L1 4037 4304 -1842 2780 13 16 0 chr15 83794377 83794682 -17585839 - AluYb8 SINE Alu -8 310 1 706 304 98 45 chr15 83794682 83795421 -17585100 + L1MB7 LINE L1 4304 5107 -1039 1894 159 3 22 chr15 83795492 83795807 -17584714 - AluSx SINE Alu -3 309 1 453 250 32 38 chr15 83795851 83796162 -17584359 + L1MB7 LINE L1 5256 5603 -2205 1375 128 132 4 chr15 83796182 83796417 -17584104 + AluJb SINE Alu 29 293 -19 1443 166 64 77 chr15 83796448 83796888 -17583633 + L1MB7 LINE L1 5732 6165 -19 331 286 9 0 chr15 83796894 83797006 -17583515 + L1MC5 LINE L1 5816 5928 -1880 798 168 44 98 chr15 83797020 83797335 -17583186 + L1MC5 LINE L1 6898 7195 -766 1018 148 0 44 chr15 83797351 83797533 -17582988 + FRAM SINE Alu 1 174 -2 1554 221 52 33 chr15 83797572 83798029 -17582492 + MLT1F LTR MaLR 62 527 -15 414 211 89 8 chr15 83798243 83798366 -17582155 - MIR SINE MIR -65 197 65 7695 24 0 3 chr15 83798953 83800070 -17580451 - L1PA3 LINE L1 -3 6152 5037 406 294 22 15 chr15 83800198 83800334 -17580187 - MIR SINE MIR -112 150 14 205 359 150 46 chr15 83800990 83801363 -17579158 - L2 LINE L2 -1 3271 2860 2138 239 58 11 chr15 83801385 83801992 -17578529 - L1ME3A LINE L1 -8 6162 5528 315 0 0 0 chr15 83802516 83802551 -17577970 + (CA)n Simple_repeat Simple_repeat 1 35 0 189 0 0 0 chr15 83802550 83802571 -17577950 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 24 0 0 0 chr15 83803860 83803884 -17576637 + AT_rich Low_complexity Low_complexity 1 24 0 617 232 134 6 chr15 83803884 83804048 -17576473 - MIR SINE MIR 0 262 78 250 254 16 0 chr15 83904805 83904868 -17475653 + GA-rich Low_complexity Low_complexity 1 64 0 2111 104 24 0 chr15 83904991 83905279 -17475242 + AluSx SINE Alu 1 295 -17 277 343 141 9 chr15 83905676 83905889 -17474632 - MIR SINE MIR -14 248 8 371 274 57 8 chr15 83906403 83906527 -17473994 + MLT1I LTR MaLR 2 131 -278 2147 114 3 23 chr15 83906563 83906870 -17473651 + AluSq SINE Alu 1 301 -12 293 260 49 42 chr15 83906929 83907110 -17473411 + MLT1I LTR MaLR 267 403 -6 204 302 0 0 chr15 83907665 83907718 -17472803 + MIR3 SINE MIR 154 206 -2 1714 159 31 3 chr15 83909608 83909898 -17470623 - AluJb SINE Alu -14 298 1 217 289 123 26 chr15 83909900 83910014 -17470507 + L3 LINE CR1 1089 1213 -364 192 77 0 0 chr15 83910014 83910040 -17470481 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 2511 87 0 0 chr15 83910074 83910386 -17470135 + AluSq SINE Alu 1 312 -1 194 240 40 0 chr15 83910417 83910467 -17470054 + L3 LINE CR1 1360 1411 -166 703 214 56 46 chr15 83910614 83910857 -17469664 - L1ME3 LINE L1 0 6164 5919 267 176 0 0 chr15 83911425 83911476 -17469045 + U5 snRNA snRNA 1 51 -65 207 294 15 44 chr15 83911481 83911549 -17468972 + MIR SINE MIR 30 95 -113 351 261 239 16 chr15 83911716 83911904 -17468617 - MIR SINE MIR -13 249 20 1680 163 10 27 chr15 83912051 83912346 -17468175 - AluJo SINE Alu -22 290 1 273 280 220 8 chr15 83913361 83913479 -17467042 - MIR3 SINE MIR -52 156 14 1718 169 29 0 chr15 83914303 83914581 -17465940 + AluSx SINE Alu 2 287 -25 267 31 0 0 chr15 83914581 83914613 -17465908 + (TA)n Simple_repeat Simple_repeat 2 33 0 1690 151 16 57 chr15 83915022 83915339 -17465182 - AluJo SINE Alu -8 304 1 880 126 0 24 chr15 83915359 83915486 -17465035 + FLAM_C SINE Alu 2 125 -8 24 53 0 0 chr15 83915486 83915524 -17464997 + AT_rich Low_complexity Low_complexity 1 38 0 1982 146 7 0 chr15 83915810 83916112 -17464409 - AluSx SINE Alu -8 304 1 459 0 0 0 chr15 83916191 83916242 -17464279 + (CA)n Simple_repeat Simple_repeat 2 52 0 1897 158 3 7 chr15 83917348 83917652 -17462869 + AluJo SINE Alu 1 303 -9 1787 101 116 4 chr15 83917669 83917937 -17462584 + AluSx SINE Alu 1 298 -14 280 349 95 28 chr15 83917939 83918191 -17462330 + L2 LINE L2 2709 2977 -337 239 308 13 0 chr15 83918413 83918491 -17462030 + L2 LINE L2 3235 3313 0 2515 68 0 0 chr15 83918906 83919217 -17461304 + AluY SINE Alu 1 311 0 706 232 103 5 chr15 83919513 83919698 -17460823 + MIR SINE MIR 31 233 -29 180 111 0 0 chr15 83919728 83919755 -17460766 + (ATG)n Simple_repeat Simple_repeat 3 29 0 1973 142 10 0 chr15 83919838 83920126 -17460395 + AluSx SINE Alu 1 291 -21 285 309 0 0 chr15 83920274 83920342 -17460179 + L2 LINE L2 3205 3272 0 2531 57 0 0 chr15 83920347 83920644 -17459877 + AluY SINE Alu 1 297 -14 397 296 63 14 chr15 83921005 83921147 -17459374 + MIR SINE MIR 15 163 -99 522 128 0 58 chr15 83921149 83921235 -17459286 + AluJ/FRAM SINE Alu 221 301 -11 612 145 8 53 chr15 83921236 83921367 -17459154 + AluSq/x SINE Alu 2 126 -186 186 272 99 0 chr15 83921471 83921552 -17458969 + MER5A DNA MER1_type 97 185 -4 2174 125 3 7 chr15 83921555 83921860 -17458661 - AluSx SINE Alu -8 304 1 801 242 114 24 chr15 83921945 83922234 -17458287 + L2 LINE L2 2980 3294 -19 544 285 231 0 chr15 83922946 83923167 -17457354 + MLT1K LTR MaLR 311 582 -6 310 318 71 74 chr15 83923209 83923505 -17457016 - L2 LINE L2 -13 3259 2965 267 290 16 94 chr15 83923613 83923858 -17456663 - L2 LINE L2 -464 2850 2625 890 185 38 19 chr15 83923949 83924190 -17456331 - MER33 DNA MER1_type 0 363 5 462 215 59 22 chr15 83924287 83924422 -17456099 - MIR SINE MIR -55 207 68 244 287 8 82 chr15 83924735 83924857 -17455664 - L1ME LINE L1 -491 5630 5518 2175 94 20 7 chr15 83924919 83925216 -17455305 + AluSc SINE Alu 1 301 -8 580 206 6 73 chr15 83926488 83926653 -17453868 - MER103 DNA DNA -7 159 6 919 182 0 13 chr15 83926808 83926967 -17453554 + MLT1A2 LTR MaLR 5 161 -213 1926 104 0 4 chr15 83926979 83927229 -17453292 + AluSx SINE Alu 1 249 -63 448 248 19 9 chr15 83930563 83930668 -17449853 - MIR SINE MIR -110 152 47 812 169 28 0 chr15 83931778 83931920 -17448601 - FRAM SINE Alu -30 146 1 384 273 78 23 chr15 83932687 83932815 -17447706 + MIR SINE MIR 20 154 -108 332 0 47 0 chr15 83932943 83932986 -17447535 + (TATG)n Simple_repeat Simple_repeat 4 48 0 1487 56 0 6 chr15 83932986 83933160 -17447361 - AluY SINE Alu -26 285 113 460 70 0 0 chr15 83933162 83933219 -17447302 - AluJ/FLAM SINE Alu -254 58 2 590 255 32 68 chr15 83933558 83933809 -17446712 - L1MC4 LINE L1 -11 8031 7790 1242 256 64 49 chr15 83933824 83934419 -17446102 - L1MC4 LINE L1 -400 7642 7039 1558 207 61 22 chr15 83935213 83935624 -17444897 - L1ME LINE L1 -924 5222 4796 * 2049 196 44 125 chr15 83935612 83935755 -17444766 - L1ME LINE L1 -1639 4507 4354 2212 91 24 0 chr15 83935755 83936052 -17444469 - AluY SINE Alu -7 304 1 2049 196 44 125 chr15 83936052 83936588 -17443933 - L1ME LINE L1 -1792 4354 3776 1427 168 12 107 chr15 83936588 83936916 -17443605 - AluJo SINE Alu -4 298 2 2049 196 44 125 chr15 83936916 83936930 -17443591 - L1ME LINE L1 -2370 3776 3762 1586 171 55 4 chr15 83936930 83937204 -17443317 - AluJb SINE Alu -24 288 1 2049 196 44 125 chr15 83937204 83937435 -17443086 - L1ME LINE L1 -2384 3762 3656 2286 182 72 33 chr15 83937472 83937956 -17442565 + MLT1D LTR MaLR 1 503 -2 372 340 64 0 chr15 83938047 83938203 -17442318 - MIR3 SINE MIR -2 206 41 978 273 132 34 chr15 83939728 83940204 -17440317 - L2 LINE L2 -20 3293 2788 234 18 70 35 chr15 83940581 83940638 -17439883 + (TA)n Simple_repeat Simple_repeat 2 60 0 1080 193 152 33 chr15 83941301 83941323 -17439198 - L1MC4 LINE L1 -1 8041 8023 1030 179 0 0 chr15 83941323 83941485 -17439036 + FRAM SINE Alu 1 162 -4 1080 193 152 33 chr15 83941485 83941998 -17438523 - L1MC4 LINE L1 -19 8023 7350 249 200 0 0 chr15 83942314 83942359 -17438162 + L2 LINE L2 3269 3313 0 243 289 44 11 chr15 83943606 83943696 -17436825 - L2 LINE L2 -995 2319 2227 193 375 23 0 chr15 83944969 83945057 -17435464 + L3 LINE CR1 1483 1572 -5 195 42 0 0 chr15 83945300 83945324 -17435197 + (A)n Simple_repeat Simple_repeat 1 24 0 220 333 67 0 chr15 83946593 83946668 -17433853 + MER5A DNA MER1_type 110 189 0 340 208 148 67 chr15 83947713 83947862 -17432659 - L1ME4a LINE L1 0 6121 5961 480 302 67 11 chr15 83948035 83948214 -17432307 - MIR SINE MIR -17 245 57 2090 126 0 13 chr15 83948350 83948660 -17431861 - AluSq SINE Alu -7 306 1 685 281 110 23 chr15 83949850 83950160 -17430361 + L2 LINE L2 2956 3292 -21 317 273 151 35 chr15 83950272 83950444 -17430077 + MIR SINE MIR 20 211 -51 618 138 0 0 chr15 83950919 83951013 -17429508 - MER30 DNA MER1_type 0 230 137 2796 32 0 0 chr15 83951013 83951329 -17429192 + AluYb8 SINE Alu 1 316 -2 1302 114 0 0 chr15 83951334 83951509 -17429012 + AluSg/x SINE Alu 129 303 -9 725 108 39 31 chr15 83951509 83951639 -17428882 - MER30 DNA MER1_type -92 138 8 1085 246 9 19 chr15 83953395 83953720 -17426801 - L1MC4 LINE L1 -975 7067 6746 2031 221 82 30 chr15 83954327 83955032 -17425489 - L1MC4 LINE L1 -4 8038 7297 612 271 89 40 chr15 83955310 83955557 -17424964 - MIR SINE MIR -1 261 3 1737 198 61 35 chr15 83955807 83956232 -17424289 + MER63B DNA MER1_type 1 436 0 189 94 0 0 chr15 83957635 83957667 -17422854 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1562 194 14 3 chr15 83957671 83957965 -17422556 + AluJo SINE Alu 1 297 -15 646 190 65 27 chr15 83958225 83958409 -17422112 - MER58B DNA MER1_type -15 326 136 22 35 0 0 chr15 83959289 83959318 -17421203 + AT_rich Low_complexity Low_complexity 1 29 0 2357 97 3 10 chr15 83959336 83959645 -17420876 + AluSq SINE Alu 1 307 -6 642 196 0 23 chr15 83959875 83960008 -17420513 - Tigger3(Golem) DNA MER2_type 0 3038 2909 298 285 39 62 chr15 83960277 83960407 -17420114 + L2 LINE L2 3164 3290 -23 578 195 0 86 chr15 83962703 83962831 -17417690 + FLAM_A SINE Alu 1 117 -16 827 142 8 0 chr15 83962993 83963120 -17417401 - FLAM_A SINE Alu -1 132 5 596 260 59 41 chr15 83963242 83963580 -17416941 + L1ME1 LINE L1 4385 4728 -1418 * 872 236 68 4 chr15 83963573 83963823 -17416698 + L1ME1 LINE L1 5896 6161 -5 2339 67 7 0 chr15 83963830 83964135 -17416386 - AluY SINE Alu 0 307 1 214 283 0 0 chr15 83964785 83964838 -17415683 + MIR SINE MIR 89 141 -67 219 36 0 0 chr15 83965028 83965056 -17415465 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2198 98 0 3 chr15 83965056 83965343 -17415178 - AluSq SINE Alu -27 286 1 2214 114 0 0 chr15 83966134 83966431 -17414090 + AluSq SINE Alu 1 297 -16 185 268 0 0 chr15 83966464 83966505 -17414016 - L2 LINE L2 -92 3180 3140 221 317 117 25 chr15 83967416 83967536 -17412985 + L3 LINE CR1 622 752 -825 289 308 120 23 chr15 83967583 83967716 -17412805 - L2 LINE L2 0 3272 3127 208 234 0 21 chr15 83968023 83968037 -17412484 - MIR SINE MIR 0 262 217 221 182 0 0 chr15 83968037 83968070 -17412451 - L2 LINE L2 -19 3294 3262 185 300 115 85 chr15 83968077 83968243 -17412278 + L3 LINE CR1 814 974 -603 198 0 0 0 chr15 83968243 83968265 -17412256 + (TG)n Simple_repeat Simple_repeat 2 23 0 185 300 115 85 chr15 83968265 83968508 -17412013 + L3 LINE CR1 974 1235 -342 7699 20 1 1 chr15 83968729 83969986 -17410535 + L1PA3 LINE L1 4896 6152 -3 2314 52 7 42 chr15 83970088 83970395 -17410126 + AluY SINE Alu 1 296 -15 413 308 42 14 chr15 83970590 83970733 -17409788 + MIR SINE MIR 17 163 -99 224 339 146 0 chr15 83970909 83971039 -17409482 - MIR SINE MIR -111 151 3 1122 250 112 47 chr15 83972036 83972287 -17408234 - L1ME LINE L1 -4940 1140 907 2751 13 7 3 chr15 83972287 83972597 -17407924 - AluYa5 SINE Alu 0 311 1 1122 250 112 47 chr15 83972597 83973106 -17407415 - L1ME LINE L1 -5173 907 308 529 238 19 19 chr15 83973158 83973318 -17407203 - L1ME LINE L1 -5848 222 63 266 265 91 38 chr15 83973844 83973924 -17406597 - L2 LINE L2 0 3313 3221 2226 92 0 0 chr15 83973924 83974230 -17406291 + AluSx SINE Alu 1 306 0 266 265 91 38 chr15 83974230 83974280 -17406241 - L2 LINE L2 -92 3221 3175 567 219 36 57 chr15 83974322 83974514 -17406007 - MLT1D LTR MaLR 0 505 318 2380 74 0 0 chr15 83974666 83974951 -17405570 + AluY SINE Alu 13 297 -14 1926 101 3 52 chr15 83974954 83975242 -17405279 + AluSx SINE Alu 1 274 -38 306 323 77 68 chr15 83975259 83975597 -17404924 - L2 LINE L2 -926 2388 2048 21 0 0 0 chr15 83975929 83975950 -17404571 + AT_rich Low_complexity Low_complexity 1 21 0 210 105 0 0 chr15 83976045 83976083 -17404438 + (A)n Simple_repeat Simple_repeat 1 38 0 225 234 54 126 chr15 83976084 83976251 -17404270 + L1ME4a LINE L1 5964 6118 -3 2311 98 0 0 chr15 83976298 83976593 -17403928 - AluSc SINE Alu -14 295 1 185 313 78 62 chr15 83977326 83977505 -17403016 + MIR SINE MIR 81 262 0 1835 78 0 4 chr15 83977677 83977907 -17402614 + AluY SINE Alu 75 303 -8 363 96 0 0 chr15 83977911 83977963 -17402558 + MER66A LTR ERV1 287 338 -140 40 0 0 0 chr15 83977963 83978003 -17402518 + AT_rich Low_complexity Low_complexity 1 40 0 366 339 65 45 chr15 83978680 83978925 -17401596 + L3 LINE CR1 254 503 -1074 240 302 23 107 chr15 83979183 83979398 -17401123 + L3 LINE CR1 628 824 -753 584 240 40 0 chr15 83979642 83979792 -17400729 + L1MB8 LINE L1 6010 6165 -13 16962 166 29 16 chr15 83979821 83985032 -17395489 + L1PA14 LINE L1 1 5852 -1747 273 75 0 0 chr15 83985032 83985072 -17395449 + (TAAAA)n Simple_repeat Simple_repeat 3 42 0 16962 166 29 16 chr15 83985072 83986836 -17393685 + L1PA14 LINE L1 5852 7590 -9 2113 118 0 0 chr15 83986924 83987224 -17393297 - AluSc SINE Alu 0 300 1 297 83 0 0 chr15 83987452 83987500 -17393021 + Alu SINE Alu 253 300 -2 877 96 79 34 chr15 83988207 83988385 -17392136 + L1MA5 LINE L1 6115 6300 0 198 0 0 0 chr15 83990418 83990440 -17390081 + (CA)n Simple_repeat Simple_repeat 2 23 0 756 126 84 28 chr15 83990495 83990638 -17389883 + MER7A DNA MER2_type 1 149 -197 196 191 281 0 chr15 83990753 83990812 -17389709 - MIR SINE MIR -64 144 70 263 197 11 45 chr15 83991141 83991214 -17389307 + MIR SINE MIR 44 110 -98 249 216 0 14 chr15 83991524 83991598 -17388923 + L1ME4a LINE L1 6047 6119 -2 26 0 0 0 chr15 83991655 83991681 -17388840 + AT_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr15 83992215 83992239 -17388282 + (TAA)n Simple_repeat Simple_repeat 1 24 0 25 31 0 0 chr15 83992310 83992342 -17388179 + AT_rich Low_complexity Low_complexity 1 32 0 346 174 14 0 chr15 83992349 83992418 -17388103 + Charlie5 DNA MER1_type 2516 2585 -27 301 285 134 43 chr15 83992420 83992606 -17387915 + MIR SINE MIR 33 235 -27 578 362 37 8 chr15 83997212 83997455 -17383066 + MIR SINE MIR 2 251 -11 5320 177 49 19 chr15 83997579 83998545 -17381976 - Charlie1 DNA MER1_type 0 2761 1826 2401 65 0 0 chr15 83998545 83998836 -17381685 + AluY SINE Alu 1 291 -20 5320 177 49 19 chr15 83998836 83999274 -17381247 - Charlie1 DNA MER1_type -935 1826 5 239 289 141 8 chr15 83999497 83999618 -17380903 - L2 LINE L2 -208 3064 2928 2435 56 0 16 chr15 84000351 84000655 -17379866 + AluY SINE Alu 1 299 -12 5192 171 7 23 chr15 84000670 84000814 -17379707 + L1MB3 LINE L1 5173 5318 -865 2043 109 7 16 chr15 84000814 84001117 -17379404 + AluSx SINE Alu 11 310 -2 5192 171 7 23 chr15 84001117 84001992 -17378529 + L1MB3 LINE L1 5318 6178 -5 254 231 34 122 chr15 84002595 84002742 -17377779 + L2 LINE L2 2889 3022 -250 2153 107 0 39 chr15 84002742 84003051 -17377470 + AluSx SINE Alu 1 297 -15 419 255 203 0 chr15 84004185 84004338 -17376183 - MIR3 SINE MIR -3 205 22 497 229 117 53 chr15 84004706 84004894 -17375627 - MIR SINE MIR -1 261 62 202 220 0 0 chr15 84004956 84005006 -17375515 + (TA)n Simple_repeat Simple_repeat 1 50 0 321 296 201 12 chr15 84005316 84005485 -17375036 - MIR SINE MIR -1 261 61 253 373 45 15 chr15 84006175 84006309 -17374212 + L2 LINE L2 3129 3266 -6 332 329 181 9 chr15 84006493 84006709 -17373812 - MIR SINE MIR -6 256 4 336 324 162 25 chr15 84006862 84007066 -17373455 - MIR SINE MIR -6 256 25 1053 261 134 29 chr15 84007562 84008038 -17372483 + MLT1K LTR MaLR 56 581 -7 562 237 98 78 chr15 84008120 84008225 -17372296 + L2 LINE L2 3008 3109 -204 1724 179 3 23 chr15 84008225 84008253 -17372268 - AluJo SINE Alu -6 306 279 348 24 0 0 chr15 84008253 84008294 -17372227 + (TG)n Simple_repeat Simple_repeat 2 42 0 1724 179 3 23 chr15 84008294 84008573 -17371948 - AluJo SINE Alu -33 279 5 562 237 98 78 chr15 84008573 84008685 -17371836 + L2 LINE L2 3109 3217 -96 2168 112 0 0 chr15 84008685 84008980 -17371541 - AluSx SINE Alu -17 295 1 261 0 0 0 chr15 84008987 84009016 -17371505 + (TTG)n Simple_repeat Simple_repeat 2 30 0 562 237 98 78 chr15 84009016 84009084 -17371437 + L2 LINE L2 3222 3308 -5 274 323 126 20 chr15 84009114 84009312 -17371209 + MIR SINE MIR 25 243 -19 1533 163 54 86 chr15 84009627 84010013 -17370508 + MLT1A2 LTR MaLR 1 374 0 892 121 8 15 chr15 84010061 84010193 -17370328 + FLAM_C SINE Alu 1 131 -2 225 65 0 0 chr15 84010373 84010404 -17370117 + (GA)n Simple_repeat Simple_repeat 2 32 0 2159 115 0 43 chr15 84010665 84010988 -17369533 - AluSg SINE Alu -1 309 1 201 317 65 16 chr15 84011114 84011237 -17369284 - MIR3 SINE MIR -44 164 36 329 266 48 24 chr15 84011250 84011374 -17369147 + MER113 DNA MER1_type? 3 129 -392 2208 128 0 0 chr15 84011741 84012046 -17368475 + AluSx SINE Alu 1 305 -7 2366 83 3 10 chr15 84012144 84012446 -17368075 + AluSq SINE Alu 1 300 -13 411 323 69 60 chr15 84012882 84013099 -17367422 - L2 LINE L2 -40 3232 3014 1199 74 0 0 chr15 84013101 84013250 -17367271 - AluSc SINE Alu -4 305 157 902 82 0 8 chr15 84014150 84014284 -17366237 + (TTCC)n Simple_repeat Simple_repeat 3 135 0 1837 144 32 0 chr15 84014284 84014569 -17365952 - AluJb SINE Alu -18 294 1 252 0 0 0 chr15 84014617 84014645 -17365876 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 723 221 0 0 chr15 84014647 84014760 -17365761 - FLAM_A SINE Alu -29 113 1 206 196 82 171 chr15 84014834 84014906 -17365615 - MIR SINE MIR -10 252 200 2469 70 0 0 chr15 84014906 84015205 -17365316 + AluY SINE Alu 1 299 -12 206 196 82 171 chr15 84015205 84015290 -17365231 - MIR SINE MIR -62 200 109 289 281 229 7 chr15 84015395 84015548 -17364973 - MIR SINE MIR -14 248 62 392 238 168 14 chr15 84015853 84015996 -17364525 - MIR SINE MIR -15 247 83 2289 81 13 7 chr15 84016011 84016319 -17364202 + AluY SINE Alu 1 310 -1 268 256 85 12 chr15 84016400 84016482 -17364039 - MIR SINE MIR -74 188 101 638 105 24 16 chr15 84016584 84016708 -17363813 + GA-rich Low_complexity Low_complexity 1 125 0 225 333 56 0 chr15 84017367 84017493 -17363028 - L2 LINE L2 -227 3045 2913 498 347 0 12 chr15 84017667 84017840 -17362681 + MLT1K LTR MaLR 4 174 -414 2243 136 0 0 chr15 84018001 84018311 -17362210 - AluSx SINE Alu -2 310 1 356 197 56 0 chr15 84018347 84018418 -17362103 + MLT1K LTR MaLR 194 268 -320 2067 139 0 0 chr15 84018471 84018766 -17361755 - AluSx SINE Alu -17 295 1 536 255 47 118 chr15 84018773 84019028 -17361493 + MLT1K LTR MaLR 258 494 -94 619 215 6 57 chr15 84019229 84019406 -17361115 - MIR SINE MIR 0 262 95 1344 217 125 76 chr15 84019406 84019511 -17361010 + MLT1F1 LTR MaLR 1 99 -468 2464 61 3 0 chr15 84019511 84019806 -17360715 - AluY SINE Alu -15 296 1 1344 217 125 76 chr15 84019806 84020236 -17360285 + MLT1F1 LTR MaLR 99 567 0 439 293 22 62 chr15 84020236 84020589 -17359932 + MLT1F1-int LTR MaLR 1 453 -918 802 285 9 27 chr15 84020589 84020810 -17359711 - MLT1K LTR MaLR -161 427 211 327 288 22 50 chr15 84020812 84020923 -17359598 + MLT1F1-int LTR MaLR 467 575 -796 2238 108 0 0 chr15 84020923 84021218 -17359303 + AluSx SINE Alu 1 295 -17 327 288 22 50 chr15 84021218 84021245 -17359276 + MLT1F1-int LTR MaLR 575 601 -770 1813 159 39 0 chr15 84021267 84021550 -17358971 + AluSx SINE Alu 6 299 -13 1758 177 10 3 chr15 84021784 84022078 -17358443 + AluJb SINE Alu 2 297 -15 244 405 11 16 chr15 84022088 84022273 -17358248 + MLT1F1-int LTR MaLR 701 884 -487 566 281 72 65 chr15 84022496 84022587 -17357934 + MLT1F1-int LTR MaLR 1057 1146 -225 369 62 0 0 chr15 84022587 84022635 -17357886 + (TG)n Simple_repeat Simple_repeat 2 49 0 566 281 72 65 chr15 84022635 84022849 -17357672 + MLT1F1-int LTR MaLR 1146 1364 -7 1456 207 149 44 chr15 84022856 84023366 -17357155 + MLT1F1 LTR MaLR 1 559 -8 1810 142 13 33 chr15 84023451 84023753 -17356768 + AluJo SINE Alu 1 296 -16 1890 126 11 4 chr15 84023757 84024034 -17356487 + AluSx SINE Alu 2 280 -32 230 0 33 0 chr15 84024063 84024093 -17356428 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 420 261 101 25 chr15 84024128 84024327 -17356194 + L1ME1 LINE L1 5949 6162 -4 37 39 0 0 chr15 84024526 84024577 -17355944 + AT_rich Low_complexity Low_complexity 1 51 0 351 332 45 23 chr15 84024815 84025035 -17355486 - L2 LINE L2 -524 2790 2566 265 29 22 2 chr15 84025319 84025368 -17355153 - AluSp/q SINE Alu 0 303 259 225 354 35 0 chr15 84025831 84025944 -17354577 - MIR SINE MIR -13 249 133 824 191 174 0 chr15 84027407 84027585 -17352936 - MER3 DNA MER1_type 0 209 1 609 218 75 52 chr15 84028573 84028747 -17351774 + MER5A DNA MER1_type 4 181 -8 483 281 72 27 chr15 84031370 84031591 -17348930 - MIR SINE MIR -14 248 18 879 153 21 0 chr15 84031813 84031957 -17348564 - MER5A DNA MER1_type 0 189 43 323 279 95 32 chr15 84031816 84031974 -17348547 + MER5A DNA MER1_type 18 185 -4 * 318 236 55 55 chr15 84032905 84033015 -17347506 + MIR SINE MIR 153 262 0 193 312 128 40 chr15 84033078 84033203 -17347318 - MIR SINE MIR -122 140 5 1750 159 0 60 chr15 84034191 84034506 -17346015 + AluJb SINE Alu 1 296 -16 407 200 0 8 chr15 84034639 84034764 -17345757 + CT-rich Low_complexity Low_complexity 2 125 0 2041 96 51 17 chr15 84035802 84036094 -17344427 + AluSx SINE Alu 1 302 -10 371 307 31 16 chr15 84036132 84036259 -17344262 - L2 LINE L2 -3 3310 3182 331 302 57 6 chr15 84036339 84036498 -17344023 - L2 LINE L2 -135 3178 3012 306 330 90 32 chr15 84036656 84036844 -17343677 + L2 LINE L2 2856 3054 -218 1167 194 0 72 chr15 84037186 84037423 -17343098 + MER58A DNA MER1_type 2 221 -3 2043 137 3 3 chr15 84038075 84038375 -17342146 - AluJo SINE Alu -12 300 1 774 275 174 30 chr15 84038443 84039091 -17341430 + L2 LINE L2 2568 3313 0 725 159 32 8 chr15 84041037 84041163 -17339358 - FLAM_C SINE Alu -4 129 1 246 307 273 11 chr15 84041247 84041423 -17339098 + MIR SINE MIR 20 241 -21 2422 77 0 0 chr15 84042405 84042703 -17337818 + AluSx SINE Alu 1 298 -14 692 190 26 0 chr15 84043033 84043149 -17337372 + MER58B DNA MER1_type 222 340 -1 264 265 77 39 chr15 84043153 84043334 -17337187 - L1MC4 LINE L1 -238 7804 7617 974 252 43 12 chr15 84043362 84043616 -17336905 - L1ME1 LINE L1 -14 6152 5891 * 3790 217 105 65 chr15 84043612 84043794 -17336727 - L1M4 LINE L1 -743 5472 5299 2139 133 3 0 chr15 84043794 84044095 -17336426 - AluSx SINE Alu -10 302 1 3790 217 105 65 chr15 84044095 84044275 -17336246 - L1M4 LINE L1 -916 5299 5128 1967 109 35 0 chr15 84044275 84044559 -17335962 - AluSx SINE Alu -18 294 1 3790 217 105 65 chr15 84044559 84045024 -17335497 - L1M4 LINE L1 -1087 5128 4683 2196 108 3 3 chr15 84045024 84045321 -17335200 + AluSx SINE Alu 1 297 -15 1558 186 22 0 chr15 84045321 84045595 -17334926 - AluJo SINE Alu -31 281 1 3790 217 105 65 chr15 84045595 84046001 -17334520 - L1M4 LINE L1 -1532 4683 4295 2058 120 0 32 chr15 84046001 84046309 -17334212 - AluSx SINE Alu -13 299 2 3790 217 105 65 chr15 84046309 84046701 -17333820 - L1M4 LINE L1 -1920 4295 3818 1178 309 38 29 chr15 84046996 84047517 -17333004 - L1M4 LINE L1 -5837 559 34 438 115 16 0 chr15 84047785 84047846 -17332675 - U7 snRNA snRNA -1 62 1 183 365 47 9 chr15 84047964 84048071 -17332450 + MIR SINE MIR 66 176 -86 1530 250 204 10 chr15 84048078 84048984 -17331537 - L2 LINE L2 -20 3293 2213 1893 180 0 0 chr15 84049433 84049744 -17330777 - AluJb SINE Alu -1 311 1 2300 103 0 0 chr15 84049750 84050042 -17330479 - AluSg SINE Alu -18 292 1 2343 57 0 4 chr15 84050210 84050489 -17330032 - AluSc SINE Alu -9 300 23 449 291 0 16 chr15 84050537 84050664 -17329857 - AluSq/x SINE Alu -188 125 1 281 299 28 19 chr15 84051588 84051695 -17328826 - MIR SINE MIR -69 193 86 239 284 37 46 chr15 84052636 84052745 -17327776 + MIR SINE MIR 36 143 -65 24 0 0 0 chr15 84053165 84053189 -17327332 + AT_rich Low_complexity Low_complexity 1 24 0 459 159 109 87 chr15 84053824 84053962 -17326559 + L2 LINE L2 3173 3313 0 261 139 0 0 chr15 84053972 84054015 -17326506 + (CA)n Simple_repeat Simple_repeat 2 44 0 261 98 39 0 chr15 84054448 84054499 -17326022 - L1MB7 LINE L1 -1 6183 6131 189 0 0 0 chr15 84054858 84054879 -17325642 + (T)n Simple_repeat Simple_repeat 1 21 0 220 287 147 53 chr15 84055514 84055664 -17324857 - MIR SINE MIR -1 261 98 368 324 28 9 chr15 84055678 84055786 -17324735 - L2 LINE L2 -5 3267 3158 660 298 51 25 chr15 84055827 84056062 -17324459 - MIR SINE MIR -1 261 21 1913 113 0 0 chr15 84056511 84056768 -17323753 - AluSx SINE Alu -11 301 45 473 280 98 0 chr15 84056928 84057121 -17323400 - L1ME LINE L1 -397 5724 5513 2412 24 14 0 chr15 84057171 84057509 -17323012 + AluYb8 SINE Alu 1 342 0 1827 121 7 21 chr15 84057767 84058057 -17322464 - AluJo SINE Alu -26 286 1 330 189 27 14 chr15 84058057 84058131 -17322390 - MER33 DNA MER1_type -198 126 52 225 97 0 0 chr15 84058137 84058168 -17322353 + MER33 DNA MER1_type 50 80 -244 2816 13 0 0 chr15 84059610 84059917 -17320604 - AluYa5 SINE Alu -4 307 1 533 202 0 0 chr15 84060513 84060607 -17319914 + FLAM_A SINE Alu 35 128 -14 241 222 111 56 chr15 84061584 84061674 -17318847 + L2 LINE L2 3161 3255 -17 14209 125 33 15 chr15 84062547 84064922 -17315599 - Tigger1 DNA MER2_type 0 2418 1 2300 109 3 3 chr15 84065106 84065410 -17315111 + AluSx SINE Alu 1 304 -8 2479 71 0 0 chr15 84066620 84066930 -17313591 - AluY SINE Alu -1 310 1 322 291 0 0 chr15 84067260 84067339 -17313182 - MIR3 SINE MIR -21 187 109 550 293 114 44 chr15 84067359 84067656 -17312865 + L3 LINE CR1 808 1125 -452 2202 92 7 0 chr15 84067890 84068173 -17312348 - AluSp SINE Alu -28 285 1 436 262 186 9 chr15 84068569 84068779 -17311742 - MIR SINE MIR -6 256 10 201 74 0 0 chr15 84069294 84069321 -17311200 + (CCAA)n Simple_repeat Simple_repeat 1 27 0 542 343 63 13 chr15 84070382 84070621 -17309900 - MIR SINE MIR -1 261 11 652 342 68 4 chr15 84070958 84071192 -17309329 + MIR SINE MIR 8 256 -6 187 271 71 47 chr15 84071644 84071729 -17308792 + L3 LINE CR1 1482 1568 -9 300 286 199 35 chr15 84072606 84072893 -17307628 - L1ME4a LINE L1 -42 6079 5746 340 266 65 49 chr15 84072936 84073120 -17307401 - L1ME4a LINE L1 -458 5663 5477 2229 87 49 0 chr15 84073349 84073635 -17306886 + AluSg SINE Alu 1 300 -10 40639 32 24 2 chr15 84073637 84079670 -17300851 + L1PA2 LINE L1 3 6155 0 250 121 103 0 chr15 84080714 84080772 -17299749 - L1ME LINE L1 -480 5684 5621 1749 202 44 23 chr15 84080775 84081435 -17299086 - L1ME LINE L1 -590 5576 4894 2456 69 0 0 chr15 84081802 84082093 -17298428 + AluSg SINE Alu 1 291 -19 189 0 0 0 chr15 84082093 84082114 -17298407 + (TA)n Simple_repeat Simple_repeat 1 21 0 193 22 109 0 chr15 84082178 84082224 -17298297 + (TA)n Simple_repeat Simple_repeat 2 52 0 708 231 36 28 chr15 84082661 84082908 -17297613 + L2 LINE L2 2999 3247 -66 2186 98 7 0 chr15 84083434 84083711 -17296810 - AluSg SINE Alu -31 279 1 24 0 0 0 chr15 84083720 84083744 -17296777 + AT_rich Low_complexity Low_complexity 1 24 0 300 27 0 0 chr15 84084113 84084150 -17296371 + (TG)n Simple_repeat Simple_repeat 2 38 0 2481 60 3 3 chr15 84084298 84084599 -17295922 - AluY SINE Alu -10 301 1 1231 217 22 56 chr15 84085489 84085812 -17294709 - AluJb SINE Alu 0 312 1 2402 39 0 29 chr15 84086195 84086502 -17294019 - AluY SINE Alu -13 298 1 660 209 128 9 chr15 84086575 84086786 -17293735 + MER106A DNA MER1_type 1 236 0 243 353 169 5 chr15 84087701 84087885 -17292636 - MIR SINE MIR 0 262 49 2149 91 17 3 chr15 84088383 84088681 -17291840 + AluY SINE Alu 1 302 -9 1808 121 68 0 chr15 84090119 84090399 -17290122 - AluSx SINE Alu -13 299 1 468 262 107 13 chr15 84091211 84091360 -17289161 + MIR SINE MIR 21 183 -79 2104 131 0 13 chr15 84093664 84093977 -17286544 - AluSq SINE Alu -4 309 1 260 218 0 115 chr15 84095003 84095029 -17285492 + MIR SINE MIR 85 112 -96 2228 115 0 6 chr15 84095029 84095341 -17285180 - AluSx SINE Alu -2 310 1 260 218 0 115 chr15 84095341 84095392 -17285129 + MIR SINE MIR 112 153 -55 2873 226 42 12 chr15 84095499 84096217 -17284304 + L1ME1 LINE L1 5410 6148 -18 399 246 153 0 chr15 84096895 84097013 -17283508 + MIR SINE MIR 10 145 -117 2660 42 0 0 chr15 84097723 84098030 -17282491 - AluY SINE Alu -4 307 1 2306 69 10 3 chr15 84098080 84098371 -17282150 - AluY SINE Alu -18 293 1 360 285 31 80 chr15 84099257 84099643 -17280878 - MLT2C2 LTR ERVL -2 462 96 1265 216 52 26 chr15 84100044 84100428 -17280093 + L1ME2 LINE L1 5751 6144 -20 304 256 32 132 chr15 84100469 84100688 -17279833 + L1MC4 LINE L1 7829 8025 -17 358 246 123 36 chr15 84100888 84101026 -17279495 + MIR SINE MIR 86 235 -27 445 322 101 5 chr15 84102064 84102272 -17278249 - MIR SINE MIR -13 249 22 1129 170 131 29 chr15 84105082 84105388 -17275133 - L1MB4 LINE L1 -17 6163 5827 705 135 74 43 chr15 84105394 84105557 -17274964 + L1MA7 LINE L1 6106 6273 -18 297 0 0 0 chr15 84105564 84105597 -17274924 + (CA)n Simple_repeat Simple_repeat 2 34 0 435 157 114 0 chr15 84105597 84105713 -17274808 + L1MA7 LINE L1 5722 5824 -356 2509 84 0 0 chr15 84105969 84106278 -17274243 - AluSg SINE Alu -1 309 1 266 304 235 9 chr15 84107408 84107523 -17272998 + MIR SINE MIR 8 148 -114 242 229 74 57 chr15 84107707 84107829 -17272692 + MIR SINE MIR 57 180 -82 21 0 0 0 chr15 84107889 84107910 -17272611 + AT_rich Low_complexity Low_complexity 1 21 0 371 317 22 73 chr15 84108021 84108248 -17272273 + MIR SINE MIR 16 230 -32 482 341 68 18 chr15 84108699 84108919 -17271602 - MIR SINE MIR -12 250 20 2062 107 7 0 chr15 84109170 84109450 -17271071 - AluSg SINE Alu -28 282 1 385 187 11 77 chr15 84109450 84109541 -17270980 - MIR SINE MIR -115 147 63 202 236 38 113 chr15 84110127 84110233 -17270288 - MIR SINE MIR -7 255 158 188 242 61 45 chr15 84110670 84110736 -17269785 - MIR SINE MIR -177 85 19 1466 79 60 32 chr15 84111853 84112069 -17268452 - AluSc SINE Alu -5 304 83 2291 117 0 3 chr15 84112318 84112626 -17267895 - AluSq SINE Alu -6 307 1 22 0 0 0 chr15 84112648 84112670 -17267851 + AT_rich Low_complexity Low_complexity 1 22 0 2057 156 3 29 chr15 84112918 84113264 -17267257 + MER1B DNA MER1_type 1 337 0 406 235 43 26 chr15 84113439 84113554 -17266967 + MIR SINE MIR 100 216 -46 537 251 144 12 chr15 84113964 84114131 -17266390 - MIR SINE MIR -69 193 5 452 289 84 18 chr15 84115287 84115453 -17265068 + MIR SINE MIR 12 188 -74 1321 200 48 4 chr15 84115453 84115723 -17264798 - Tigger3(Golem) DNA MER2_type -2747 282 1 421 275 93 46 chr15 84115773 84116073 -17264448 + L2 LINE L2 2740 3049 -264 25 0 0 0 chr15 84116424 84116449 -17264072 + AT_rich Low_complexity Low_complexity 1 25 0 1518 162 71 40 chr15 84116711 84117007 -17263514 - AluJo SINE Alu -3 309 5 256 183 202 19 chr15 84117297 84117401 -17263120 + MER5C DNA MER1_type 201 323 -1 265 241 17 0 chr15 84118155 84118213 -17262308 + C-rich Low_complexity Low_complexity 1 59 0 24 32 0 0 chr15 84118534 84118565 -17261956 + AT_rich Low_complexity Low_complexity 1 31 0 3375 124 29 19 chr15 84118578 84119100 -17261421 - MER1A DNA MER1_type 0 527 1 267 93 0 0 chr15 84119365 84119408 -17261113 + (A)n Simple_repeat Simple_repeat 1 43 0 1249 169 97 20 chr15 84119435 84119683 -17260838 - AluJo SINE Alu -45 267 1 24 0 0 0 chr15 84119683 84119707 -17260814 + AT_rich Low_complexity Low_complexity 1 24 0 815 183 5 86 chr15 84120164 84120288 -17260233 - MER5B DNA MER1_type 0 178 72 2493 75 7 0 chr15 84120288 84120594 -17259927 - AluSq SINE Alu -5 308 1 815 183 5 86 chr15 84120594 84120655 -17259866 - MER5B DNA MER1_type -106 72 8 26 0 0 0 chr15 84121135 84121161 -17259360 + AT_rich Low_complexity Low_complexity 1 26 0 503 319 60 6 chr15 84121246 84121428 -17259093 + MIR SINE MIR 61 252 -10 2232 98 0 0 chr15 84121519 84121806 -17258715 + AluSx SINE Alu 1 287 -25 288 0 0 0 chr15 84121811 84121843 -17258678 + (TA)n Simple_repeat Simple_repeat 2 33 0 2226 97 0 54 chr15 84121919 84122250 -17258271 - AluSq SINE Alu 0 313 1 196 306 66 0 chr15 84122265 84122355 -17258166 - MIR SINE MIR -71 137 35 225 0 0 0 chr15 84122566 84122591 -17257930 + (T)n Simple_repeat Simple_repeat 1 25 0 201 329 101 13 chr15 84122886 84122965 -17257556 + MIR SINE MIR 2 87 -175 439 249 55 97 chr15 84122980 84123197 -17257324 - MIR SINE MIR -8 254 47 316 265 82 0 chr15 84123225 84123323 -17257198 + MIR SINE MIR 88 193 -69 1161 212 82 20 chr15 84123463 84123868 -17256653 - L1MC4 LINE L1 0 8042 7613 234 306 72 27 chr15 84124030 84124141 -17256380 - L2 LINE L2 -11 3261 3146 215 292 62 52 chr15 84124755 84124947 -17255574 + L3b LINE CR1 1213 1406 -177 1523 182 84 4 chr15 84125935 84126210 -17254311 + AluJb SINE Alu 2 298 -14 245 319 187 30 chr15 84128199 84128365 -17252156 - L2 LINE L2 -5 3267 3076 342 280 165 56 chr15 84129840 84130179 -17250342 - L2 LINE L2 -123 3190 2815 246 356 47 27 chr15 84130367 84130516 -17250005 - MIR SINE MIR -107 155 4 185 270 0 0 chr15 84130627 84130664 -17249857 - L3 LINE CR1 -64 1513 1477 711 154 0 46 chr15 84133265 84133395 -17247126 + FLAM_C SINE Alu 1 124 -9 357 228 25 13 chr15 84133992 84134071 -17246450 + L2 LINE L2 3186 3265 -7 2098 130 0 7 chr15 84134153 84134454 -17246067 - AluY SINE Alu -12 299 1 485 260 20 81 chr15 84134470 84134607 -17245914 + HAL1 LINE L1 2048 2165 -342 571 146 0 100 chr15 84134607 84134639 -17245882 - L1PB4 LINE L1 -6 6150 6116 2442 78 0 0 chr15 84134639 84134932 -17245589 - AluSc SINE Alu -16 293 1 571 146 0 100 chr15 84134932 84135029 -17245492 - L1PB4 LINE L1 -40 6116 6034 485 260 20 81 chr15 84135029 84135137 -17245384 + HAL1 LINE L1 2165 2278 -229 360 0 0 0 chr15 84135468 84135508 -17245013 + (TG)n Simple_repeat Simple_repeat 2 41 0 1610 165 35 57 chr15 84135527 84135843 -17244678 + AluJb SINE Alu 1 309 -3 215 277 108 12 chr15 84136147 84136230 -17244291 + MIR SINE MIR 58 148 -114 190 342 18 27 chr15 84136681 84136792 -17243729 - L2 LINE L2 -975 2339 2230 2143 98 57 0 chr15 84136966 84137262 -17243259 - AluSq SINE Alu 0 313 1 2442 67 3 0 chr15 84137322 84137622 -17242899 + AluY SINE Alu 1 301 -10 2177 108 0 3 chr15 84137695 84137990 -17242531 + AluSx SINE Alu 1 294 -18 588 173 274 0 chr15 84138116 84138284 -17242237 - MER20 DNA MER1_type 0 219 6 182 346 101 0 chr15 84138525 84138684 -17241837 - L2 LINE L2 -1893 1421 1247 362 317 91 29 chr15 84138806 84139014 -17241507 - L1ME4a LINE L1 -225 5896 5676 355 223 345 9 chr15 84139081 84139301 -17241220 + L2 LINE L2 3020 3313 0 2705 72 0 0 chr15 84140196 84140545 -17239976 - L1PA7 LINE L1 0 6154 5806 1773 101 4 12 chr15 84140824 84141101 -17239420 + AluSx SINE Alu 39 313 0 220 349 0 0 chr15 84141512 84141575 -17238946 - MIR SINE MIR -68 140 78 205 179 26 0 chr15 84142881 84142920 -17237601 + (TG)n Simple_repeat Simple_repeat 2 41 0 2151 47 4 0 chr15 84142976 84143230 -17237291 + AluY SINE Alu 40 294 -17 1726 166 31 3 chr15 84143237 84143527 -17236994 + AluJb SINE Alu 1 298 -14 1563 186 4 4 chr15 84145517 84145786 -17234735 + AluJo SINE Alu 5 273 -39 2318 91 14 0 chr15 84145859 84146156 -17234365 - AluSp SINE Alu -11 302 2 1898 149 9 50 chr15 84152413 84152736 -17227785 - AluSq SINE Alu -3 310 1 2221 117 10 7 chr15 84152876 84153183 -17227338 + AluSx SINE Alu 1 308 -4 1827 154 22 0 chr15 84153200 84153512 -17227009 - MER57A LTR ERV1 -4 399 81 1977 136 85 106 chr15 84153766 84154353 -17226168 - L1MB7 LINE L1 -1 6183 5609 2051 145 7 3 chr15 84154426 84154736 -17225785 - AluSx SINE Alu -1 311 1 861 202 68 12 chr15 84156010 84156258 -17224263 - MER58B DNA MER1_type 0 341 80 1204 150 186 4 chr15 84156263 84156516 -17224005 + AluJb SINE Alu 2 300 -2 278 213 0 67 chr15 84157621 84157696 -17222825 + MIR SINE MIR 187 256 -6 427 286 50 21 chr15 84157857 84157997 -17222524 - MIR3 SINE MIR -15 193 50 206 286 0 48 chr15 84158092 84158155 -17222366 + MER5A DNA MER1_type 130 189 0 189 0 0 0 chr15 84158833 84158854 -17221667 + (T)n Simple_repeat Simple_repeat 1 21 0 249 229 205 0 chr15 84159701 84159784 -17220737 + MIR SINE MIR 85 185 -23 2085 111 0 7 chr15 84159836 84160124 -17220397 + AluSx SINE Alu 23 308 -4 719 128 56 24 chr15 84160187 84160312 -17220209 - FLAM_C SINE Alu -7 136 8 23 0 0 0 chr15 84160316 84160339 -17220182 + AT_rich Low_complexity Low_complexity 1 23 0 282 292 129 18 chr15 84160619 84160790 -17219731 + MIR SINE MIR 6 195 -67 299 286 183 8 chr15 84161023 84161149 -17219372 - L2 LINE L2 -4 3309 3162 2025 142 7 3 chr15 84161876 84162185 -17218336 - AluJo SINE Alu -2 310 1 356 345 103 28 chr15 84162715 84163005 -17217516 + L2 LINE L2 2445 2756 -558 235 313 36 48 chr15 84163285 84163368 -17217153 + L2 LINE L2 3223 3304 -9 248 210 0 0 chr15 84163578 84163640 -17216881 + L1MA10 LINE L1 6271 6332 -2 2147 126 0 10 chr15 84163838 84164147 -17216374 + AluSx SINE Alu 7 312 0 486 314 141 75 chr15 84164503 84164693 -17215828 + L3 LINE CR1 367 543 -1034 2457 55 0 0 chr15 84164693 84164985 -17215536 + AluY SINE Alu 1 292 -19 198 0 0 0 chr15 84164985 84165007 -17215514 + (TA)n Simple_repeat Simple_repeat 2 23 0 486 314 141 75 chr15 84165007 84165398 -17215123 + L3 LINE CR1 542 987 -590 242 274 158 48 chr15 84165485 84165631 -17214890 + L3 LINE CR1 1171 1332 -245 470 284 108 10 chr15 84166014 84166208 -17214313 + MIR SINE MIR 48 260 -2 330 401 16 6 chr15 84167121 84167303 -17213218 - MIR3 SINE MIR -13 195 12 2185 101 10 3 chr15 84168537 84168833 -17211688 - AluSc SINE Alu -11 298 1 205 220 0 40 chr15 84170439 84170489 -17210032 + GA-rich Low_complexity Low_complexity 3 50 0 213 39 0 0 chr15 84170636 84170662 -17209859 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 279 269 20 34 chr15 84171774 84171923 -17208598 + (TCTCTG)n Simple_repeat Simple_repeat 3 149 0 857 131 0 39 chr15 84173068 84173198 -17207323 + FLAM_C SINE Alu 1 125 -18 23 0 0 0 chr15 84173629 84173652 -17206869 + AT_rich Low_complexity Low_complexity 1 23 0 369 0 0 0 chr15 84174923 84174964 -17205557 + (TG)n Simple_repeat Simple_repeat 2 42 0 3856 188 89 18 chr15 84174998 84175516 -17205005 - Charlie1a DNA MER1_type -1306 1455 975 1914 142 0 0 chr15 84175516 84175790 -17204731 - AluSx SINE Alu -38 274 1 3856 188 89 18 chr15 84175790 84175812 -17204709 - Charlie1a DNA MER1_type -1786 975 956 2155 114 0 10 chr15 84175812 84176102 -17204419 - AluSg SINE Alu -23 287 1 3856 188 89 18 chr15 84176102 84176615 -17203906 - Charlie1a DNA MER1_type -1805 956 326 895 187 187 0 chr15 84176614 84176817 -17203704 - Charlie1a DNA MER1_type -1213 242 2 * 2266 118 0 0 chr15 84177781 84178078 -17202443 - AluSx SINE Alu -15 297 1 2319 85 3 9 chr15 84178626 84178954 -17201567 + L1PA10 LINE L1 5832 6157 -11 299 253 0 0 chr15 84179103 84179182 -17201339 + L1MA10 LINE L1 6253 6331 -3 2393 106 0 0 chr15 84179405 84179716 -17200805 - AluSx SINE Alu -1 311 1 215 340 137 24 chr15 84179946 84180158 -17200363 - L2 LINE L2 -211 3061 2826 210 71 0 0 chr15 84180367 84180395 -17200126 + (T)n Simple_repeat Simple_repeat 1 28 0 431 223 274 19 chr15 84180747 84180904 -17199617 - MIR SINE MIR -59 203 7 201 318 38 81 chr15 84182209 84182298 -17198223 + L2 LINE L2 2717 2808 -506 3716 151 48 5 chr15 84182298 84182969 -17197552 - L1MA6 LINE L1 0 6300 5601 201 318 38 81 chr15 84182969 84183090 -17197431 + L2 LINE L2 2808 2918 -396 2098 65 4 14 chr15 84184008 84184284 -17196237 + AluSq SINE Alu 1 273 -40 4171 140 34 24 chr15 84184505 84185271 -17195250 - L1MB3 LINE L1 -1 6182 5409 21 57 0 0 chr15 84187117 84187152 -17193369 + AT_rich Low_complexity Low_complexity 1 35 0 1597 165 0 19 chr15 84187186 84187452 -17193069 + AluJo SINE Alu 6 266 -46 227 219 41 55 chr15 84187463 84187536 -17192985 + GA-rich Low_complexity Low_complexity 2 73 0 255 333 102 0 chr15 84187559 84187667 -17192854 + MIR SINE MIR 30 148 -60 215 356 76 0 chr15 84187731 84187849 -17192672 - L2 LINE L2 -8 3305 3179 1603 136 0 0 chr15 84188035 84188271 -17192250 - AluJb SINE Alu -11 301 66 521 139 9 0 chr15 84188417 84188525 -17191996 + (CA)n Simple_repeat Simple_repeat 2 110 0 2835 176 25 34 chr15 84189004 84189715 -17190806 + L1MB7 LINE L1 5445 6175 -8 204 40 0 0 chr15 84189738 84189763 -17190758 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 333 0 0 0 chr15 84189762 84189799 -17190722 + (CA)n Simple_repeat Simple_repeat 1 37 0 1046 164 4 44 chr15 84189799 84190024 -17190497 + L1MD3 LINE L1 7731 7946 -49 25 31 0 0 chr15 84190100 84190132 -17190389 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr15 84190287 84190315 -17190206 + AT_rich Low_complexity Low_complexity 1 28 0 1953 238 38 20 chr15 84190326 84190826 -17189695 - LTR40a LTR ERVL -10 509 1 2240 92 0 7 chr15 84191117 84191409 -17189112 - AluSc SINE Alu -18 291 2 2603 58 0 3 chr15 84191771 84192083 -17188438 - AluY SINE Alu 0 311 1 23 0 0 0 chr15 84192762 84192785 -17187736 + AT_rich Low_complexity Low_complexity 1 23 0 2762 218 67 44 chr15 84192817 84194858 -17185663 - L1ME1 LINE L1 -5 6161 4169 2068 133 3 0 chr15 84194858 84195158 -17185363 - AluSq SINE Alu -12 301 1 2762 218 67 44 chr15 84195158 84196128 -17184393 - L1ME1 LINE L1 -1997 4169 2921 1863 82 68 41 chr15 84196128 84196421 -17184100 - AluY SINE Alu -10 301 1 2762 218 67 44 chr15 84196421 84196824 -17183697 - L1ME1 LINE L1 -3245 2921 2529 23 0 0 0 chr15 84196887 84196910 -17183611 + AT_rich Low_complexity Low_complexity 1 23 0 1799 135 14 11 chr15 84197008 84197289 -17183232 - AluSx SINE Alu -19 293 12 901 180 6 34 chr15 84198008 84198186 -17182335 - MER5B DNA MER1_type -4 174 2 239 301 72 59 chr15 84198313 84198466 -17182055 + MIR SINE MIR 37 191 -71 2125 88 0 4 chr15 84199407 84199681 -17180840 + AluSg SINE Alu 1 273 -37 549 0 0 0 chr15 84199790 84199851 -17180670 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 2140 88 0 25 chr15 84199852 84200136 -17180385 - AluY SINE Alu -34 277 1 323 356 47 39 chr15 84200505 84200738 -17179783 - MIR SINE MIR -11 251 17 456 335 221 35 chr15 84201873 84202470 -17178051 - L3 LINE CR1 -8 1569 862 217 182 0 23 chr15 84202470 84202514 -17178007 - L3 LINE CR1 -858 719 677 1190 124 0 52 chr15 84202568 84202762 -17177759 - AluSg/x SINE Alu -6 304 121 1576 105 0 67 chr15 84202875 84203113 -17177408 + AluSc SINE Alu 1 222 -87 1113 207 38 0 chr15 84203237 84203450 -17177071 + AluJb SINE Alu 87 307 -5 189 132 0 0 chr15 84204056 84204094 -17176427 + (T)n Simple_repeat Simple_repeat 1 38 0 716 119 0 2 chr15 84204499 84204761 -17175760 + AluSx SINE Alu 1 308 -2 2143 116 10 7 chr15 84205423 84205726 -17174795 + AluSq SINE Alu 1 304 -9 2392 48 58 0 chr15 84205969 84206261 -17174260 + AluY SINE Alu 1 309 -2 27 0 0 0 chr15 84206323 84206350 -17174171 + AT_rich Low_complexity Low_complexity 1 27 0 1834 160 42 3 chr15 84206874 84207162 -17173359 + AluJb SINE Alu 1 299 -13 464 382 68 1 chr15 84207392 84207626 -17172895 - MIR SINE MIR -7 255 6 1879 172 0 3 chr15 84208454 84208751 -17171770 + AluJo SINE Alu 1 296 -16 2281 92 48 0 chr15 84208794 84209089 -17171432 + AluSx SINE Alu 1 309 -3 277 278 38 67 chr15 84209509 84209718 -17170803 - L1MC4 LINE L1 -1 8041 7839 234 222 16 0 chr15 84209756 84209819 -17170702 - L1ME2 LINE L1 -14 6150 6087 582 160 0 0 chr15 84209833 84209927 -17170594 - U6 snRNA snRNA -13 94 1 395 229 30 69 chr15 84209998 84210129 -17170392 - L1ME2 LINE L1 -126 6038 5913 566 216 48 0 chr15 84210131 84210280 -17170241 - L1P5 LINE L1 -485 5669 5514 1577 204 82 32 chr15 84210881 84211321 -17169200 - MLT1C LTR MaLR 0 467 6 493 156 0 0 chr15 84212237 84212314 -17168207 - AluSg/x SINE Alu -99 211 135 1895 142 26 29 chr15 84212843 84213153 -17167368 + AluJb SINE Alu 1 309 -3 2093 131 7 0 chr15 84213208 84213506 -17167015 + AluSx SINE Alu 1 300 -12 514 309 7 7 chr15 84214184 84214320 -17166201 + MIR SINE MIR 6 141 -121 2389 67 0 7 chr15 84214747 84215046 -17165475 - AluY SINE Alu -14 297 1 1406 146 32 0 chr15 84215226 84215446 -17165075 + AluJo SINE Alu 60 286 -26 552 225 72 0 chr15 84215560 84215671 -17164850 - L2 LINE L2 0 3272 3154 268 234 31 16 chr15 84215769 84215833 -17164688 - MIR SINE MIR -111 151 87 21 0 0 0 chr15 84216006 84216027 -17164494 + AT_rich Low_complexity Low_complexity 1 21 0 317 206 43 109 chr15 84216253 84216345 -17164176 - MIR SINE MIR -72 136 51 34 24 0 0 chr15 84217087 84217128 -17163393 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr15 84218096 84218120 -17162401 + AT_rich Low_complexity Low_complexity 1 24 0 2207 130 0 0 chr15 84218366 84218673 -17161848 + AluSx SINE Alu 1 307 -5 21 0 0 0 chr15 84219708 84219729 -17160792 + AT_rich Low_complexity Low_complexity 1 21 0 2159 95 3 11 chr15 84219730 84220014 -17160507 + AluSp SINE Alu 1 282 -31 2090 140 0 13 chr15 84221319 84221634 -17158887 + AluSx SINE Alu 1 311 -1 28 0 0 0 chr15 84221770 84221798 -17158723 + AT_rich Low_complexity Low_complexity 1 28 0 578 146 0 0 chr15 84223214 84223296 -17157225 + AluJ/FLAM SINE Alu 4 85 -227 2166 143 0 7 chr15 84223633 84223941 -17156580 + AluJo SINE Alu 1 306 -6 22 0 0 0 chr15 84224235 84224257 -17156264 + AT_rich Low_complexity Low_complexity 1 22 0 7184 41 19 0 chr15 84224257 84225204 -17155317 - L1PA6 LINE L1 -14 6140 5187 856 199 0 0 chr15 84225258 84225428 -17155093 - AluJb SINE Alu 0 306 137 250 282 49 55 chr15 84225436 84225599 -17154922 + L2 LINE L2 1829 1990 -1324 199 385 96 0 chr15 84226386 84226469 -17154052 - MIR SINE MIR -102 106 16 416 311 186 0 chr15 84227006 84227189 -17153332 + L3 LINE CR1 1327 1543 -34 2184 119 0 3 chr15 84227375 84227669 -17152852 + AluSx SINE Alu 1 293 -19 2061 126 7 13 chr15 84227671 84227981 -17152540 + AluSg SINE Alu 1 308 -2 592 312 91 9 chr15 84228108 84228329 -17152192 - MIR SINE MIR -11 251 13 27 0 0 0 chr15 84228559 84228586 -17151935 + AT_rich Low_complexity Low_complexity 1 27 0 622 148 64 163 chr15 84228802 84229085 -17151436 - L1MC4 LINE L1 0 8042 7788 676 228 112 0 chr15 84229184 84229390 -17151131 - L1MC4 LINE L1 -249 7793 7565 303 177 0 0 chr15 84229404 84229466 -17151055 + L1MC4 LINE L1 7536 7597 -445 1082 153 18 0 chr15 84230004 84230174 -17150347 + AluJb SINE Alu 135 307 -5 21 0 0 0 chr15 84230353 84230374 -17150147 + AT_rich Low_complexity Low_complexity 1 21 0 343 239 211 14 chr15 84231373 84231515 -17149006 + MIR SINE MIR 71 240 -22 2409 71 0 43 chr15 84232382 84232706 -17147815 - AluY SINE Alu -1 310 1 517 120 87 0 chr15 84232916 84233008 -17147513 + Tigger4(Zombi) DNA MER2_type 1 100 -2631 1035 124 75 0 chr15 84233020 84233206 -17147315 + Tigger4(Zombi) DNA MER2_type 2526 2725 -6 245 167 0 33 chr15 84233533 84233593 -17146928 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 268 398 108 8 chr15 84234220 84234479 -17146042 - L2 LINE L2 -8 3264 2980 364 323 132 47 chr15 84234572 84234634 -17145887 - L2 LINE L2 -618 2696 2641 2255 96 0 3 chr15 84234634 84234926 -17145595 - AluSg SINE Alu -19 291 1 364 323 132 47 chr15 84234926 84235395 -17145126 - L2 LINE L2 -673 2641 2120 2028 67 57 60 chr15 84236363 84236663 -17143858 - AluY SINE Alu -12 299 1 2091 117 0 38 chr15 84237295 84237611 -17142910 + AluSx SINE Alu 1 304 -8 2164 115 3 10 chr15 84237673 84237978 -17142543 + AluSg SINE Alu 1 303 -7 878 136 0 0 chr15 84239298 84239423 -17141098 + FLAM_C SINE Alu 1 125 -18 2365 98 0 0 chr15 84239528 84239833 -17140688 - AluSx SINE Alu -7 305 1 324 239 230 18 chr15 84240265 84240378 -17140143 - MIR3 SINE MIR -27 181 45 2265 84 3 0 chr15 84241382 84241666 -17138855 - AluSp SINE Alu -12 301 17 2173 92 3 16 chr15 84242178 84242483 -17138038 - AluSg SINE Alu -9 301 1 1621 135 82 8 chr15 84242997 84243264 -17137257 + AluJo SINE Alu 1 287 -25 363 281 256 5 chr15 84243764 84243963 -17136558 - MIR SINE MIR -6 256 8 381 22 0 0 chr15 84244176 84244222 -17136299 + (TG)n Simple_repeat Simple_repeat 2 47 0 897 245 45 41 chr15 84244229 84244498 -17136023 - AluJo SINE Alu -42 270 1 269 277 101 0 chr15 84244529 84244648 -17135873 - L1ME4a LINE L1 -25 6096 5966 423 132 0 0 chr15 84244860 84244928 -17135593 + (TG)n Simple_repeat Simple_repeat 1 68 0 224 239 0 0 chr15 84244930 84244976 -17135545 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 215 217 267 0 chr15 84245880 84245940 -17134581 - MIR3 SINE MIR -52 156 81 1773 147 46 14 chr15 84246483 84246768 -17133753 + AluJo SINE Alu 5 298 -14 24 0 0 0 chr15 84247052 84247076 -17133445 + AT_rich Low_complexity Low_complexity 1 24 0 330 341 0 0 chr15 84249393 84249484 -17131037 + MIR SINE MIR 30 120 -88 743 287 64 28 chr15 84249488 84249739 -17130782 + MIR SINE MIR 2 261 -1 691 219 29 73 chr15 84250993 84251198 -17129323 - MIR SINE MIR 0 262 67 357 82 0 0 chr15 84251200 84251249 -17129272 + (TGG)n Simple_repeat Simple_repeat 3 51 0 261 257 43 29 chr15 84251249 84251319 -17129202 - MIR SINE MIR -183 79 9 303 213 0 40 chr15 84251996 84252071 -17128450 + GA-rich Low_complexity Low_complexity 6 77 0 1880 171 6 8 chr15 84252391 84252743 -17127778 + MER47A DNA MER2_type 16 366 0 1504 206 60 0 chr15 84253029 84253343 -17127178 - MER58B DNA MER1_type 0 341 10 664 188 23 30 chr15 84253680 84253813 -17126708 - FLAM_A SINE Alu 0 133 2 2174 126 3 0 chr15 84253844 84254146 -17126375 + AluSx SINE Alu 1 303 -9 1012 304 67 26 chr15 84254813 84255303 -17125218 - Charlie7 DNA MER1_type -2102 510 1 238 217 191 61 chr15 84255373 84255488 -17125033 + L1MEd LINE L1 18 147 -5972 435 297 157 83 chr15 84255517 84255988 -17124533 + L1MEd LINE L1 263 768 -5351 2463 74 0 0 chr15 84256010 84256306 -17124215 + AluSg SINE Alu 1 296 -14 200 179 26 0 chr15 84256699 84256738 -17123783 - L2 LINE L2 -10 3303 3264 2194 111 10 0 chr15 84256907 84257205 -17123316 + AluSx SINE Alu 1 301 -11 1023 200 74 33 chr15 84257229 84257384 -17123137 - MER58A DNA MER1_type -2196 224 56 2401 97 0 0 chr15 84257384 84257692 -17122829 + AluSx SINE Alu 1 308 -4 1023 200 74 33 chr15 84257692 84257751 -17122770 - MER58A DNA MER1_type -2364 56 1 2088 119 3 3 chr15 84257884 84258179 -17122342 + AluSq SINE Alu 2 296 -17 2248 107 0 13 chr15 84260155 84260464 -17120057 - AluSx SINE Alu -7 305 1 2026 101 0 11 chr15 84260686 84260962 -17119559 + AluSg SINE Alu 1 273 -37 288 0 0 0 chr15 84260962 84260994 -17119527 + (CA)n Simple_repeat Simple_repeat 1 32 0 2155 122 0 3 chr15 84262282 84262577 -17117944 + AluSx SINE Alu 1 294 -18 195 129 0 0 chr15 84262577 84262608 -17117913 + (TA)n Simple_repeat Simple_repeat 2 32 0 33 0 0 0 chr15 84264326 84264359 -17116162 + AT_rich Low_complexity Low_complexity 1 33 0 240 298 84 38 chr15 84265143 84265274 -17115247 - MIR3 SINE MIR -13 195 59 866 199 84 0 chr15 84267563 84267729 -17112792 - MER5A DNA MER1_type -8 181 2 263 307 79 8 chr15 84267790 84267917 -17112604 + MER102b DNA MER1_type 38 173 -168 191 155 0 181 chr15 84267950 84268066 -17112455 + L2 LINE L2 3113 3207 -106 411 185 34 103 chr15 84268139 84268285 -17112236 + MER102b DNA MER1_type 206 341 0 2047 135 0 0 chr15 84268382 84268725 -17111796 - AluSx SINE Alu 0 343 1 220 378 160 6 chr15 84268885 84269197 -17111324 - L2 LINE L2 -52 3220 2861 1323 89 0 0 chr15 84269748 84269917 -17110604 - AluSg/x SINE Alu -7 303 135 420 140 23 246 chr15 84270480 84270588 -17109933 + MER5A DNA MER1_type 56 114 -75 1843 148 3 7 chr15 84270588 84270871 -17109650 - AluJo SINE Alu -30 282 1 420 140 23 246 chr15 84270871 84270933 -17109588 + MER5A DNA MER1_type 114 188 -1 2095 143 0 3 chr15 84271281 84271581 -17108940 - AluSx SINE Alu -13 299 1 782 236 70 0 chr15 84271622 84271821 -17108700 + MIR SINE MIR 8 220 -42 189 0 0 0 chr15 84272301 84272322 -17108199 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 2819 134 9 38 chr15 84272708 84273154 -17107367 - Tigger2a DNA MER2_type -1 433 1 232 234 180 47 chr15 84273237 84273365 -17107156 + MER5A DNA MER1_type 31 175 -14 2317 92 0 0 chr15 84273424 84273718 -17106803 + AluSg SINE Alu 1 294 -16 1260 261 57 43 chr15 84273772 84274282 -17106239 - L1MC4a LINE L1 -1753 6055 5539 240 35 0 0 chr15 84275433 84275462 -17105059 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1889 156 13 0 chr15 84277356 84277657 -17102864 + AluJb SINE Alu 1 305 -7 455 339 64 14 chr15 84278113 84278331 -17102190 + MIR SINE MIR 34 262 0 1934 113 77 0 chr15 84278386 84278660 -17101861 + AluSx SINE Alu 1 295 -17 1421 188 7 38 chr15 84278683 84278976 -17101545 + AluJo SINE Alu 1 284 -28 279 0 0 0 chr15 84278993 84279024 -17101497 + (TG)n Simple_repeat Simple_repeat 2 32 0 222 265 0 0 chr15 84279523 84279572 -17100949 - L2 LINE L2 0 3313 3265 182 296 19 0 chr15 84279987 84280041 -17100480 + MIR SINE MIR 92 146 -116 332 167 0 0 chr15 84280493 84280547 -17099974 - L1MB8 LINE L1 -5 6173 6120 363 183 26 0 chr15 84280547 84280622 -17099899 - L1M4 LINE L1 -572 5592 5527 22 56 0 0 chr15 84281476 84281512 -17099009 + AT_rich Low_complexity Low_complexity 1 36 0 259 344 56 8 chr15 84286712 84286837 -17093684 - MIR SINE MIR -76 186 56 291 358 89 0 chr15 84287167 84287290 -17093231 - L2 LINE L2 -5 3267 3134 29 0 0 0 chr15 84287571 84287600 -17092921 + AT_rich Low_complexity Low_complexity 1 29 0 268 292 205 51 chr15 84287618 84287751 -17092770 - L2 LINE L2 -639 2675 2564 2187 82 0 49 chr15 84287751 84288055 -17092466 + AluSg SINE Alu 1 289 -21 268 292 205 51 chr15 84288055 84288386 -17092135 - L2 LINE L2 -750 2564 2285 2216 100 3 31 chr15 84288386 84288707 -17091814 + AluSp SINE Alu 1 312 -1 268 292 205 51 chr15 84288707 84289008 -17091513 - L2 LINE L2 -1029 2285 1791 1996 143 7 13 chr15 84289729 84290037 -17090484 - AluSx SINE Alu -6 306 1 487 239 156 38 chr15 84290113 84290376 -17090145 - L1MC5 LINE L1 -430 7531 7238 1236 192 71 89 chr15 84290394 84290531 -17089990 - L1MC5 LINE L1 -831 6977 6839 2102 130 7 3 chr15 84290531 84290831 -17089690 + AluSx SINE Alu 1 301 -11 1236 192 71 89 chr15 84290831 84291234 -17089287 - L1MC5 LINE L1 -969 6839 6560 623 295 49 16 chr15 84292245 84292485 -17088036 - MIR SINE MIR -15 247 3 725 205 0 0 chr15 84292617 84292734 -17087787 - FLAM_A SINE Alu -16 117 1 1898 119 0 0 chr15 84292935 84293196 -17087325 + AluSx SINE Alu 44 304 -8 543 272 28 22 chr15 84293316 84293496 -17087025 + MIR SINE MIR 41 221 -41 269 254 175 8 chr15 84293598 84293724 -17086797 + MLT2C1 LTR ERVL 51 197 -200 * 366 135 189 36 chr15 84293614 84293725 -17086796 + MLT1E3 LTR MaLR 58 204 -420 1104 92 0 13 chr15 84293727 84293880 -17086641 + AluSq/x SINE Alu 1 151 -161 706 92 34 0 chr15 84293982 84294101 -17086420 + CT-rich Low_complexity Low_complexity 2 124 0 197 61 61 20 chr15 84295537 84295586 -17084935 + (TA)n Simple_repeat Simple_repeat 1 51 0 410 208 59 20 chr15 84295687 84295788 -17084733 - MLT1J LTR MaLR -299 212 108 433 255 68 19 chr15 84295987 84296148 -17084373 - MIR SINE MIR -34 228 60 701 148 8 0 chr15 84296148 84296276 -17084245 + GA-rich Low_complexity Low_complexity 1 129 0 188 274 26 88 chr15 84296284 84296397 -17084124 + MIR3 SINE MIR 11 116 -92 353 262 7 27 chr15 84296738 84296887 -17083634 + (TTA)n Simple_repeat Simple_repeat 1 146 0 806 292 53 51 chr15 84297161 84297688 -17082833 - HAL1b LINE L1 -744 604 77 1806 86 179 4 chr15 84297896 84298153 -17082368 - AluSp SINE Alu 0 303 2 209 279 0 29 chr15 84298473 84298541 -17081980 + CT-rich Low_complexity Low_complexity 2 67 0 309 26 0 0 chr15 84300437 84300475 -17080046 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 1180 175 62 9 chr15 84300498 84300709 -17079812 - AluJb SINE Alu -80 232 11 2170 130 3 3 chr15 84300935 84301242 -17079279 - AluSx SINE Alu -5 307 1 1614 126 0 4 chr15 84301730 84301961 -17078560 - AluSx SINE Alu -82 230 1 2261 72 31 20 chr15 84302139 84302432 -17078089 + AluSq SINE Alu 1 296 -17 449 248 202 65 chr15 84302503 84302608 -17077913 - L1ME4a LINE L1 -11 6110 6021 2657 7 0 0 chr15 84302608 84302892 -17077629 + AluYb8 SINE Alu 29 312 -6 449 248 202 65 chr15 84302892 84303508 -17077013 - L1ME4a LINE L1 -100 6021 5290 260 83 21 0 chr15 84304747 84304795 -17075726 + (CA)n Simple_repeat Simple_repeat 2 50 0 524 151 172 0 chr15 84305630 84305723 -17074798 + FLAM_C SINE Alu 15 123 -20 237 98 0 0 chr15 84305723 84305764 -17074757 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1937 135 36 3 chr15 84305782 84306085 -17074436 + AluSq SINE Alu 1 313 0 365 281 53 0 chr15 84308175 84308289 -17072232 - MIR SINE MIR -63 199 80 184 208 113 0 chr15 84313964 84314017 -17066504 + MIR SINE MIR 24 82 -180 1788 97 3 144 chr15 84314055 84314396 -17066125 + AluJb SINE Alu 1 293 -19 456 257 112 6 chr15 84317107 84317286 -17063235 - Charlie2a DNA MER1_type -1190 1672 1475 583 215 6 6 chr15 84317367 84317525 -17062996 + (TGGA)n Simple_repeat Simple_repeat 3 160 0 529 208 56 7 chr15 84317669 84317813 -17062708 - Charlie2a DNA MER1_type -2487 295 145 1652 120 113 11 chr15 84318511 84318786 -17061735 - AluSg SINE Alu -7 303 1 244 324 67 28 chr15 84318942 84319125 -17061396 - MIR SINE MIR -55 207 12 487 118 0 0 chr15 84320229 84320297 -17060224 + AluS SINE Alu 1 68 -245 473 202 20 0 chr15 84320302 84320401 -17060120 - Charlie4 DNA MER1_type -1857 104 4 189 74 0 0 chr15 84320703 84320730 -17059791 + (CTGGGG)n Simple_repeat Simple_repeat 2 28 0 881 233 136 90 chr15 84324348 84324831 -17055690 + MLT2B2 LTR ERVL 15 469 -46 378 356 44 0 chr15 84327948 84328108 -17052413 - MIR SINE MIR -71 191 25 2166 108 13 0 chr15 84328484 84328791 -17051730 + AluSx SINE Alu 1 311 -1 1119 144 16 0 chr15 84328811 84328999 -17051522 + AluSg/x SINE Alu 120 310 0 2048 119 10 3 chr15 84330135 84330429 -17050092 - AluSg SINE Alu -14 296 1 608 159 56 9 chr15 84330431 84330538 -17049983 - AluJb SINE Alu -198 114 3 803 230 121 17 chr15 84330539 84330778 -17049743 + MER77 LTR ERV1 336 599 -6 247 273 34 45 chr15 84330831 84330919 -17049602 + MER5B DNA MER1_type 90 176 -2 276 226 250 0 chr15 84330938 84331022 -17049499 - MIR SINE MIR -110 152 48 401 358 102 0 chr15 84333306 84333493 -17047028 - MIR SINE MIR -36 226 21 207 100 0 0 chr15 84334342 84334372 -17046149 + (A)n Simple_repeat Simple_repeat 1 30 0 328 306 28 0 chr15 84336252 84336360 -17044161 + L2 LINE L2 3168 3278 -35 264 352 117 32 chr15 84336722 84336969 -17043552 + MLT1K LTR MaLR 143 410 -178 2530 67 0 0 chr15 84338005 84338317 -17042204 - AluSx SINE Alu 0 312 1 339 355 73 0 chr15 84338427 84338551 -17041970 - MER91A DNA MER1_type -63 133 1 225 0 0 0 chr15 84339005 84339030 -17041491 + (A)n Simple_repeat Simple_repeat 1 25 0 2235 113 0 3 chr15 84339032 84339343 -17041178 + AluSg SINE Alu 1 310 0 2139 124 7 0 chr15 84339347 84339653 -17040868 + AluSx SINE Alu 1 308 -4 2167 89 0 0 chr15 84339784 84340096 -17040425 + AluY SINE Alu 1 312 0 238 260 78 0 chr15 84341026 84341103 -17039418 - MIR SINE MIR -6 256 174 901 286 28 36 chr15 84341128 84341488 -17039033 - MLT1I LTR MaLR 0 409 53 568 273 141 14 chr15 84341562 84341782 -17038739 - MIR SINE MIR -5 257 10 24 0 0 0 chr15 84342184 84342208 -17038313 + AT_rich Low_complexity Low_complexity 1 24 0 270 200 100 27 chr15 84342579 84342689 -17037832 + MER106B DNA MER1_type 942 1059 0 601 310 66 12 chr15 84343924 84344182 -17036339 + L1MC/D LINE L1 5549 5820 -1988 815 78 298 21 chr15 84344190 84344331 -17036190 + AluSq SINE Alu 1 180 -133 737 171 64 54 chr15 84344344 84344604 -17035917 - Charlie1 DNA MER1_type -2582 179 6 2078 112 7 13 chr15 84344618 84344923 -17035598 - AluSq SINE Alu -10 303 1 207 243 29 14 chr15 84345612 84345708 -17034813 + CT-rich Low_complexity Low_complexity 1 97 0 1253 190 75 12 chr15 84346292 84346669 -17033852 + MLT1E2 LTR MaLR 192 626 0 195 250 116 62 chr15 84346772 84346808 -17033713 + L2 LINE L2 3150 3183 -89 2402 84 0 0 chr15 84346808 84347117 -17033404 - AluY SINE Alu -2 309 1 195 250 116 62 chr15 84347117 84347192 -17033329 + L2 LINE L2 3183 3267 -5 397 325 25 79 chr15 84348805 84348890 -17031631 + L1ME LINE L1 5423 5511 -610 2260 82 3 0 chr15 84348890 84349181 -17031340 + AluSp SINE Alu 1 292 -21 397 325 25 79 chr15 84349181 84349298 -17031223 + L1ME LINE L1 5511 5614 -507 1140 106 35 0 chr15 84349639 84349809 -17030712 + AluSq SINE Alu 135 310 -3 374 273 129 52 chr15 84349964 84350235 -17030286 + L2 LINE L2 2932 3223 -49 184 234 43 0 chr15 84350278 84350325 -17030196 - MIR3 SINE MIR -42 166 118 259 346 77 0 chr15 84350373 84350503 -17030018 + L2 LINE L2 3132 3271 -1 1100 123 18 0 chr15 84351113 84351276 -17029245 - AluSq SINE Alu -17 296 131 435 280 30 65 chr15 84351680 84351813 -17028708 - MIR3 SINE MIR -32 176 49 2157 103 7 0 chr15 84351813 84352113 -17028408 - AluSp SINE Alu -11 302 1 435 280 30 65 chr15 84352113 84352147 -17028374 - MIR3 SINE MIR -159 49 15 360 310 76 49 chr15 84352201 84352385 -17028136 - MIR3 SINE MIR -3 205 17 2031 116 17 0 chr15 84352645 84352939 -17027582 + AluSg SINE Alu 1 299 -11 2205 99 3 0 chr15 84352940 84353232 -17027289 + AluSx SINE Alu 2 294 -18 243 214 286 0 chr15 84353559 84353643 -17026878 - MIR SINE MIR -142 120 13 272 204 19 0 chr15 84354660 84354714 -17025807 + L2 LINE L2 3205 3259 -13 192 97 0 0 chr15 84354714 84354745 -17025776 + (CAAT)n Simple_repeat Simple_repeat 4 34 0 21 36 0 0 chr15 84356325 84356353 -17024168 + GC_rich Low_complexity Low_complexity 1 28 0 186 96 39 39 chr15 84356789 84356841 -17023680 + G-rich Low_complexity Low_complexity 2 53 0 204 125 0 0 chr15 84357207 84357239 -17023282 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 228 221 116 47 chr15 84357339 84357425 -17023096 + MIR SINE MIR 101 192 -70 417 285 129 11 chr15 84357809 84357995 -17022526 + MIR SINE MIR 48 255 -7 235 250 0 0 chr15 84358122 84358174 -17022347 + LTR30 LTR ERV1 1 52 -670 2227 131 29 50 chr15 84358174 84358607 -17021914 + LTR12 LTR ERV1 100 474 -240 198 316 63 13 chr15 84359026 84359105 -17021416 + L2 LINE L2 3101 3183 -89 764 280 69 62 chr15 84359177 84359642 -17020879 - MLT1J LTR MaLR -2 509 42 246 149 0 21 chr15 84359610 84359657 -17020864 - MLT1L LTR MaLR -542 73 28 * 2329 90 3 7 chr15 84359802 84360102 -17020419 - AluSp SINE Alu -14 299 1 2038 275 91 36 chr15 84360102 84361145 -17019376 + L2 LINE L2 2037 3146 -167 255 31 0 0 chr15 84361165 84361197 -17019324 + (GA)n Simple_repeat Simple_repeat 2 33 0 2299 189 67 21 chr15 84361213 84361305 -17019216 + MER90 LTR ERV1 72 158 -456 2307 104 0 3 chr15 84361305 84361604 -17018917 + AluSg SINE Alu 1 298 -12 2299 189 67 21 chr15 84361604 84362030 -17018491 + MER90 LTR ERV1 158 614 0 233 231 0 19 chr15 84362071 84362123 -17018398 + L2 LINE L2 3171 3221 -92 1959 225 7 35 chr15 84362540 84363002 -17017519 + LTR2 LTR ERV1 1 449 0 2495 86 0 0 chr15 84363028 84363330 -17017191 - AluSx SINE Alu -10 302 1 2178 102 41 0 chr15 84363628 84363923 -17016598 - AluSq SINE Alu -2 311 5 2137 129 26 0 chr15 84364249 84364551 -17015970 + AluSx SINE Alu 1 310 -2 204 134 134 124 chr15 84364570 84364667 -17015854 - MIR SINE MIR -3 259 162 924 189 6 17 chr15 84364995 84365170 -17015351 + AluJo SINE Alu 9 181 -131 320 319 0 32 chr15 84365847 84365941 -17014580 + MIR SINE MIR 172 262 0 711 150 15 8 chr15 84366204 84366329 -17014192 + MER50 LTR ERV1 1 126 -608 484 128 13 0 chr15 84366329 84366407 -17014114 + MADE1 DNA Mariner 1 79 -1 597 245 27 85 chr15 84366623 84366832 -17013689 + MIR SINE MIR 3 194 -68 2244 81 46 0 chr15 84366832 84367116 -17013405 + AluSq SINE Alu 1 297 -16 597 245 27 85 chr15 84367116 84367162 -17013359 + MIR SINE MIR 194 241 -21 302 370 18 24 chr15 84368132 84368297 -17012224 + L1ME3A LINE L1 5764 5927 -243 521 133 0 0 chr15 84368504 84368579 -17011942 + AluJo SINE Alu 60 134 -178 2139 110 40 0 chr15 84368806 84369105 -17011416 + AluSq SINE Alu 1 311 -2 444 351 31 36 chr15 84369114 84369336 -17011185 - L1M4 LINE L1 -2197 3949 3729 618 209 16 0 chr15 84369754 84369883 -17010638 - L1MD1 LINE L1 0 6242 6112 1130 179 0 54 chr15 84369885 84370108 -17010413 + AluSx SINE Alu 2 212 -100 320 118 20 0 chr15 84370108 84370159 -17010362 + AluSq/x SINE Alu 78 129 -174 2143 96 7 7 chr15 84370159 84370439 -17010082 + AluSp SINE Alu 1 280 -33 218 293 0 17 chr15 84370440 84370498 -17010023 + (TATG)n Simple_repeat Simple_repeat 2 58 0 233 128 0 0 chr15 84370846 84370893 -17009628 + L1M3 LINE L1 5446 5492 -679 2038 156 0 3 chr15 84370893 84371207 -17009314 + AluSq SINE Alu 1 313 0 1822 182 10 3 chr15 84371275 84371582 -17008939 + AluJb SINE Alu 1 309 -3 595 191 7 59 chr15 84371587 84371739 -17008782 - MLT1A2 LTR MaLR -38 336 193 724 174 62 28 chr15 84371794 84371976 -17008545 - AluSg/x SINE Alu 0 324 138 345 213 74 37 chr15 84371977 84372085 -17008436 - MIR SINE MIR -117 145 34 273 96 0 77 chr15 84372085 84372137 -17008384 + AluSg/x SINE Alu 142 189 -113 338 333 9 0 chr15 84372164 84372269 -17008252 - U6 snRNA snRNA 0 107 2 1828 127 32 38 chr15 84372900 84373215 -17007306 + AluSq SINE Alu 1 313 0 381 285 91 63 chr15 84373392 84373613 -17006908 + HAL1 LINE L1 5 231 -2276 412 266 11 0 chr15 84373985 84374079 -17006442 + L1MC/D LINE L1 5543 5637 -2171 397 123 0 15 chr15 84374742 84374807 -17005714 - MLT1L LTR MaLR -4 463 400 2549 84 0 0 chr15 84374807 84375115 -17005406 + AluSg SINE Alu 1 308 -2 426 280 16 0 chr15 84375131 84375256 -17005265 - MLT1L LTR MaLR -402 213 87 343 268 20 78 chr15 84376183 84376234 -17004287 - MIR SINE MIR -56 206 154 2233 112 14 0 chr15 84376234 84376528 -17003993 + AluSx SINE Alu 1 298 -14 343 268 20 78 chr15 84376528 84376629 -17003892 - MIR SINE MIR -108 154 63 896 131 0 0 chr15 84376914 84377036 -17003485 + AluSc SINE Alu 179 300 -9 596 290 0 19 chr15 84377041 84377255 -17003266 + L1M4 LINE L1 2297 2506 -3640 446 309 23 0 chr15 84378098 84378273 -17002248 + L1M4 LINE L1 3995 4173 -1973 711 97 0 0 chr15 84378277 84378370 -17002151 + AluS SINE Alu 2 94 -218 1622 109 5 5 chr15 84378370 84378626 -17001895 + AluSx SINE Alu 64 319 0 426 250 112 13 chr15 84378630 84378854 -17001667 + L1M4 LINE L1 4170 4415 -1731 186 43 0 0 chr15 84378906 84378929 -17001592 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2642 52 0 0 chr15 84379114 84379422 -17001099 + AluY SINE Alu 1 308 -3 2301 112 7 0 chr15 84379945 84380250 -17000271 + AluSq SINE Alu 1 307 -6 24 0 0 0 chr15 84380327 84380351 -17000170 + AT_rich Low_complexity Low_complexity 1 24 0 834 112 0 0 chr15 84380471 84380617 -16999904 + L1PA13 LINE L1 6036 6181 0 2089 112 0 21 chr15 84380626 84380945 -16999576 + AluSg SINE Alu 1 313 0 836 885 68 18 chr15 84380974 84381055 -16999466 + L1MC/D LINE L1 5188 5263 -923 2525 197 55 11 chr15 84381055 84381401 -16999120 + MER44D DNA MER2_type 1 434 -2053 2285 100 0 13 chr15 84381401 84381701 -16998820 + AluSx SINE Alu 1 296 -16 2525 197 55 11 chr15 84381701 84381881 -16998640 + MER44D DNA MER2_type 434 605 0 836 885 68 18 chr15 84381881 84382069 -16998452 + L1MC/D LINE L1 5263 5443 -743 1327 155 49 100 chr15 84382119 84382287 -16998234 + MER2 DNA MER2_type 15 157 -188 1562 169 12 83 chr15 84382287 84382612 -16997909 + AluJo SINE Alu 1 302 -10 1327 155 49 100 chr15 84382612 84382792 -16997729 + MER2 DNA MER2_type 157 345 0 1102 195 14 5 chr15 84382793 84383008 -16997513 + L1MC/D LINE L1 5452 5668 -691 1293 128 0 5 chr15 84383029 84383217 -16997304 - AluSg/x SINE Alu -1 309 123 1859 160 20 10 chr15 84384956 84385256 -16995265 + AluJb SINE Alu 1 303 -9 195 184 0 0 chr15 84385319 84385357 -16995164 + (CCA)n Simple_repeat Simple_repeat 1 38 0 505 226 107 13 chr15 84385468 84385627 -16994894 + MIR SINE MIR 89 262 0 279 265 122 10 chr15 84385817 84385915 -16994606 + L2 LINE L2 3202 3310 -3 1834 132 0 0 chr15 84385955 84386198 -16994323 - AluSx SINE Alu -66 246 4 317 232 87 0 chr15 84387004 84387073 -16993448 - MIR SINE MIR -114 148 74 2073 135 6 3 chr15 84387104 84387415 -16993106 - AluSx SINE Alu 0 312 1 2205 112 10 10 chr15 84388038 84388343 -16992178 + AluSx SINE Alu 1 305 -7 2262 115 0 19 chr15 84388582 84388894 -16991627 + AluSg SINE Alu 3 308 -2 2136 114 3 7 chr15 84388908 84389205 -16991316 + AluSq SINE Alu 1 296 -17 1119 153 0 0 chr15 84389228 84389398 -16991123 + AluSg SINE Alu 1 170 -140 27 29 0 0 chr15 84389503 84389537 -16990984 + AT_rich Low_complexity Low_complexity 1 34 0 1383 90 0 17 chr15 84389539 84389717 -16990804 - AluSx SINE Alu -137 175 1 237 368 89 11 chr15 84389778 84389926 -16990595 - MIR SINE MIR -56 206 38 1850 170 50 21 chr15 84389926 84390303 -16990218 - MLT1B LTR MaLR 0 390 3 237 368 89 11 chr15 84390303 84390344 -16990177 - MIR SINE MIR -224 38 2 412 307 102 6 chr15 84390624 84390800 -16989721 + MER91A DNA MER1_type 4 196 0 225 304 49 20 chr15 84390847 84390949 -16989572 + L2 LINE L2 3123 3227 -86 213 65 0 0 chr15 84390953 84390984 -16989537 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 261 254 0 14 chr15 84391597 84391668 -16988853 - MER92C LTR ERV1 -15 539 470 485 283 46 30 chr15 84391693 84391930 -16988591 - L1ME1 LINE L1 -43 6123 5883 2214 125 7 0 chr15 84391930 84392235 -16988286 - AluSx SINE Alu -4 308 2 997 161 142 1 chr15 84392371 84392759 -16987762 + LTR54 LTR ERV1 1 510 0 2532 68 3 0 chr15 84393746 84394055 -16986466 - AluY SINE Alu -1 310 1 2184 90 3 72 chr15 84394227 84394560 -16985961 - AluSx SINE Alu -1 311 2 2336 129 0 0 chr15 84394585 84394895 -16985626 - AluSx SINE Alu -2 310 1 258 147 0 0 chr15 84394897 84394952 -16985569 - L1M LINE L1 -815 5331 5277 214 229 42 0 chr15 84395157 84395205 -16985316 + MIR SINE MIR 77 126 -136 2932 16 0 0 chr15 84395233 84395548 -16984973 - AluYb8 SINE Alu -3 315 1 204 313 31 0 chr15 84396562 84396626 -16983895 - L2 LINE L2 -1 3312 3247 1967 235 43 12 chr15 84396683 84396929 -16983592 - MER34 LTR ERV1 -2 540 303 2175 114 3 16 chr15 84396929 84397236 -16983285 + AluSq SINE Alu 1 303 -10 1967 235 43 12 chr15 84397236 84397503 -16983018 - MER34 LTR ERV1 -239 303 11 193 183 33 17 chr15 84398270 84398330 -16982191 + CT-rich Low_complexity Low_complexity 2 62 0 2254 174 5 9 chr15 84398350 84398788 -16981733 + L1 LINE L1 4855 5290 -856 26 30 0 0 chr15 84398788 84398821 -16981700 + AT_rich Low_complexity Low_complexity 1 33 0 2303 238 16 25 chr15 84398940 84399716 -16980805 + L1MEc LINE L1 2103 2838 -3377 22 0 0 0 chr15 84400712 84400734 -16979787 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 84401402 84401424 -16979097 + AT_rich Low_complexity Low_complexity 1 22 0 2357 92 0 13 chr15 84401437 84401751 -16978770 - AluSg SINE Alu 0 310 1 252 0 0 0 chr15 84401760 84401788 -16978733 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2972 72 0 5 chr15 84401790 84402177 -16978344 - L1PA13 LINE L1 -12 6151 5767 2478 69 0 0 chr15 84402178 84402510 -16978011 - L1PA13 LINE L1 -489 5679 5348 259 106 0 91 chr15 84402523 84402589 -16977932 - L1 LINE L1 -1314 4832 4773 246 233 89 33 chr15 84402855 84402945 -16977576 + L2 LINE L2 2990 3084 -188 746 203 53 9 chr15 84402956 84403237 -16977284 + MER46C DNA MER2_type 1 338 0 2504 90 3 0 chr15 84403785 84404097 -16976424 + AluSq SINE Alu 1 313 0 2450 68 16 3 chr15 84404326 84404633 -16975888 + AluY SINE Alu 1 311 0 189 74 0 0 chr15 84404996 84405023 -16975498 + (TG)n Simple_repeat Simple_repeat 1 27 0 2052 108 49 0 chr15 84405401 84405687 -16974834 - AluSq SINE Alu -13 300 1 2317 121 0 0 chr15 84405691 84405997 -16974524 - AluSq SINE Alu -7 306 1 1743 155 11 25 chr15 84406125 84406409 -16974112 + MSTA LTR MaLR 1 280 -148 1043 76 56 0 chr15 84406992 84407136 -16973385 + MSTA LTR MaLR 277 428 0 2047 134 0 0 chr15 84407686 84407992 -16972529 + AluSq SINE Alu 6 311 -2 591 117 27 36 chr15 84408303 84408414 -16972107 + L1MA7 LINE L1 6181 6290 -1 1724 132 7 4 chr15 84408451 84408724 -16971797 - AluSx SINE Alu -4 308 35 324 136 0 0 chr15 84408787 84408831 -16971690 - AluSx SINE Alu -259 44 1 354 80 0 0 chr15 84409066 84409116 -16971405 + (TG)n Simple_repeat Simple_repeat 2 51 0 226 402 0 11 chr15 84410421 84410513 -16970008 - MIR SINE MIR -98 110 20 1845 133 3 65 chr15 84410519 84410843 -16969678 - AluJo SINE Alu -8 304 1 378 216 91 0 chr15 84411027 84411115 -16969406 + MER5A DNA MER1_type 9 104 -85 2227 103 0 0 chr15 84411845 84412155 -16968366 + AluSx SINE Alu 1 310 -2 317 341 12 24 chr15 84412459 84412623 -16967898 - MER5B DNA MER1_type -16 162 1 774 202 11 34 chr15 84412690 84412868 -16967653 + MER5B DNA MER1_type 1 174 -4 447 295 16 95 chr15 84412997 84413187 -16967334 - L3 LINE CR1 -514 1063 889 312 295 144 0 chr15 84413302 84413441 -16967080 - MER91A DNA MER1_type -33 163 5 3943 57 2 0 chr15 84413679 84414169 -16966352 + L1PA8 LINE L1 5682 6172 0 847 201 32 32 chr15 84414508 84414574 -16965947 + MER5A DNA MER1_type 1 66 -123 1746 123 0 0 chr15 84414574 84414826 -16965695 + AluSx SINE Alu 46 297 -15 847 201 32 32 chr15 84414826 84414948 -16965573 + MER5A DNA MER1_type 65 189 0 216 0 0 0 chr15 84415714 84415738 -16964783 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 689 276 119 3 chr15 84415925 84416244 -16964277 - L1MC4 LINE L1 0 8042 7687 263 70 0 23 chr15 84416246 84416289 -16964232 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 745 191 23 0 chr15 84416389 84416520 -16964001 - AluJo SINE Alu -177 135 2 4521 144 9 17 chr15 84416523 84417108 -16963413 - L1 LINE L1 -816 5330 4751 2017 115 13 7 chr15 84417108 84417412 -16963109 - AluSx SINE Alu -6 306 1 4521 144 9 17 chr15 84417412 84417604 -16962917 - L1 LINE L1 -1395 4751 4559 508 248 40 93 chr15 84417778 84418004 -16962517 + L2 LINE L2 3100 3313 0 2075 132 0 0 chr15 84418035 84418339 -16962182 - AluSx SINE Alu -8 304 1 263 381 51 0 chr15 84418361 84418479 -16962042 + MIR SINE MIR 60 183 -79 261 0 0 0 chr15 84418959 84418988 -16961533 + (TG)n Simple_repeat Simple_repeat 2 30 0 2084 159 150 15 chr15 84419144 84419604 -16960917 - L1MB7 LINE L1 -16 6168 5647 2190 96 10 0 chr15 84419626 84419929 -16960592 - AluSx SINE Alu -6 306 1 801 275 87 55 chr15 84420090 84420494 -16960027 + MLT1J2 LTR MaLR 28 444 -6 404 278 19 0 chr15 84420645 84420753 -16959768 + MER81 DNA DNA 1 110 -4 253 227 0 0 chr15 84423040 84423084 -16957437 + MIR SINE MIR 61 104 -158 2339 75 0 0 chr15 84423106 84423401 -16957120 + AluSq SINE Alu 1 295 -18 3571 193 25 36 chr15 84423416 84424924 -16955597 + L1ME1 LINE L1 4627 6115 -51 291 238 0 0 chr15 84424926 84424989 -16955532 - MER116 DNA Mariner -16 64 2 252 296 111 66 chr15 84478085 84478311 -16902210 - MIR SINE MIR -6 256 21 2313 98 0 13 chr15 84478472 84478777 -16901744 - AluSc SINE Alu -8 301 1 183 302 19 0 chr15 84478834 84478887 -16901634 + L2 LINE L2 3255 3308 -5 334 362 0 0 chr15 84478987 84479103 -16901418 + MER117 DNA MER1_type 82 197 0 25 31 0 0 chr15 84479889 84479921 -16900600 + AT_rich Low_complexity Low_complexity 1 32 0 6141 52 3 9 chr15 84479926 84480707 -16899814 + L1P LINE L1 1 776 -5370 458 319 14 19 chr15 84481119 84481329 -16899192 + MIR SINE MIR 7 215 -47 1060 170 66 0 chr15 84481330 84481512 -16899009 + AluSg/x SINE Alu 104 297 -15 1765 188 7 0 chr15 84482555 84482858 -16897663 + AluJb SINE Alu 1 305 -7 230 276 35 11 chr15 84483149 84483236 -16897285 + L2 LINE L2 3163 3251 -21 771 238 46 26 chr15 84483245 84483504 -16897017 - Charlie8 DNA MER1_type -2135 282 29 485 234 76 14 chr15 84484491 84484636 -16895885 - MIR SINE MIR -9 253 100 314 260 0 27 chr15 84484653 84484726 -16895795 + MER92B LTR ERV1 8 78 -558 583 216 6 74 chr15 84484755 84484931 -16895590 + MER92B LTR ERV1 416 579 -57 343 200 21 53 chr15 84484915 84485010 -16895511 + MER92B LTR ERV1 541 632 -4 * 218 336 8 16 chr15 84485033 84485155 -16895366 - MIR SINE MIR -17 245 125 311 294 89 56 chr15 84485835 84486049 -16894472 + MIR SINE MIR 15 235 -27 2414 84 0 3 chr15 84486681 84486979 -16893542 - AluY SINE Alu -14 297 1 336 269 32 39 chr15 84487075 84487231 -16893290 + MIR SINE MIR 38 192 -70 1005 253 57 13 chr15 84487238 84487539 -16892982 + L1MC4 LINE L1 7588 7901 -141 477 191 45 9 chr15 84488052 84488162 -16892359 + L2 LINE L2 3188 3301 -12 747 288 206 15 chr15 84488863 84489338 -16891183 + L2 LINE L2 1801 2366 -948 411 364 5 21 chr15 84489452 84489639 -16890882 - MIR3 SINE MIR -2 206 23 785 262 11 0 chr15 84489803 84489986 -16890535 - MER117 DNA MER1_type 0 197 13 327 265 12 0 chr15 84490223 84490306 -16890215 + MIR SINE MIR 48 131 -131 2019 102 28 28 chr15 84491082 84491365 -16889156 + AluSc SINE Alu 1 283 -26 2114 114 0 0 chr15 84491680 84491953 -16888568 + AluSc SINE Alu 1 273 -36 23 0 0 0 chr15 84491953 84491976 -16888545 + AT_rich Low_complexity Low_complexity 1 23 0 187 188 0 0 chr15 84492764 84492796 -16887725 + L2 LINE L2 3261 3292 -21 929 240 99 86 chr15 84493822 84494196 -16886325 + MLT1C LTR MaLR 8 391 -76 2022 145 0 7 chr15 84494196 84494499 -16886022 - AluSx SINE Alu -11 301 1 929 240 99 86 chr15 84494499 84494578 -16885943 + MLT1C LTR MaLR 391 467 0 316 296 141 0 chr15 84494976 84495111 -16885410 + MIR SINE MIR 19 172 -90 474 18 0 0 chr15 84495141 84495196 -16885325 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 229 345 84 25 chr15 84496120 84496323 -16884198 - MIR SINE MIR 0 262 48 875 175 136 23 chr15 84496395 84496601 -16883920 - MSTD LTR MaLR 0 396 215 2508 179 39 5 chr15 84496601 84497043 -16883478 - MSTB2 LTR MaLR 0 457 1 875 175 136 23 chr15 84497043 84497150 -16883371 - MSTD LTR MaLR -181 215 1 240 234 21 55 chr15 84497336 84497431 -16883090 + MER5B DNA MER1_type 81 186 -3 1708 194 68 48 chr15 84498054 84498512 -16882009 - MLT1C LTR MaLR 0 467 1 21 0 0 0 chr15 84498584 84498605 -16881916 + AT_rich Low_complexity Low_complexity 1 21 0 786 176 0 0 chr15 84499565 84499690 -16880831 + FLAM_A SINE Alu 1 125 -8 1780 154 0 0 chr15 84502424 84502697 -16877824 + AluSx SINE Alu 40 312 0 214 304 14 0 chr15 84502788 84502857 -16877664 + (TA)n Simple_repeat Simple_repeat 2 71 0 311 197 43 27 chr15 84502906 84503254 -16877267 - L1MC3 LINE L1 0 7785 5990 272 228 33 11 chr15 84503256 84503348 -16877173 - L1MC3 LINE L1 -1919 5889 5796 13947 108 32 2 chr15 84503353 84506150 -16874371 - L1PA7 LINE L1 0 6154 3270 308 264 78 36 chr15 84506159 84506326 -16874195 - L1MC3 LINE L1 -2067 5741 5568 422 269 84 35 chr15 84506562 84506722 -16873799 - MIR SINE MIR -6 256 80 1775 213 57 31 chr15 84506722 84507177 -16873344 + MLT1C LTR MaLR 1 467 0 422 269 84 35 chr15 84507177 84507255 -16873266 - MIR SINE MIR -182 80 7 252 250 0 0 chr15 84508030 84508086 -16872435 + Charlie7 DNA MER1_type 41 96 -2516 628 259 45 30 chr15 84508449 84508650 -16871871 + MIR SINE MIR 9 212 -50 242 267 27 40 chr15 84509452 84509527 -16870994 - L1M3 LINE L1 -650 5684 5611 436 274 70 21 chr15 84509676 84509851 -16870670 - L1M3 LINE L1 -583 5595 5413 542 280 11 42 chr15 84510300 84510489 -16870032 - MIR SINE MIR -21 241 59 478 270 12 37 chr15 84511101 84511264 -16869257 + Charlie8 DNA MER1_type 107 265 -2152 273 312 0 0 chr15 84511306 84511383 -16869138 + Charlie8 DNA MER1_type 2341 2417 0 354 284 70 70 chr15 84512599 84512870 -16867651 + L2 LINE L2 2916 3186 -86 2809 140 26 50 chr15 84513137 84513681 -16866840 + L1MB5 LINE L1 5627 6157 -17 2206 128 85 22 chr15 84513755 84514155 -16866366 - MSTB LTR MaLR 0 426 2 2259 99 10 0 chr15 84514838 84515130 -16865391 - AluSx SINE Alu -17 295 1 1632 208 64 34 chr15 84515663 84516100 -16864421 - MLT1C LTR MaLR 0 467 18 323 324 136 27 chr15 84516181 84516344 -16864177 + HAL1 LINE L1 1088 1232 -1275 198 71 0 0 chr15 84516344 84516372 -16864149 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 323 324 136 27 chr15 84516372 84516538 -16863983 + HAL1 LINE L1 1232 1453 -1054 2085 130 3 10 chr15 84517221 84517529 -16862992 + AluSq SINE Alu 1 306 -7 634 332 140 7 chr15 84518669 84519183 -16861338 + L2 LINE L2 2715 3294 -19 351 254 59 99 chr15 84521125 84521481 -16859040 - MLT1J LTR MaLR -75 464 123 504 198 103 9 chr15 84521624 84521740 -16858781 - MLT1A2 LTR MaLR -8 366 240 * 737 175 111 32 chr15 84521715 84521904 -16858617 - MLT1A1 LTR MaLR -31 334 131 1096 219 80 20 chr15 84521904 84522155 -16858366 + Tigger7 DNA MER2_type 2 267 -2220 551 157 90 0 chr15 84522154 84522243 -16858278 + Tigger7 DNA MER2_type 2390 2486 -1 * 670 176 15 8 chr15 84522244 84522375 -16858146 - MLT1A1 LTR MaLR -232 133 2 2314 114 0 0 chr15 84522835 84523133 -16857388 + AluSg SINE Alu 1 298 -12 241 265 64 69 chr15 84523613 84523756 -16856765 + MIR SINE MIR 20 161 -61 181 250 194 14 chr15 84523789 84523861 -16856660 + MIR SINE MIR 18 102 -160 631 313 135 27 chr15 84523876 84524359 -16856162 - LTR67 LTR ERVL -3 554 20 322 307 20 0 chr15 84524382 84524483 -16856038 + MIR SINE MIR 160 262 0 552 241 166 48 chr15 84524958 84525145 -16855376 + MER63A DNA MER1_type 1 209 -1 1935 161 0 13 chr15 84525195 84525511 -16855010 - AluSx SINE Alu 0 312 1 3617 160 51 13 chr15 84525921 84526552 -16853969 - LTR51 LTR ERV1 -16 655 1 217 239 0 0 chr15 84527619 84527665 -16852856 + (CA)n Simple_repeat Simple_repeat 1 46 0 2733 142 54 11 chr15 84527785 84528250 -16852271 - MER31A LTR ERV1 0 485 1 522 189 0 11 chr15 84528285 84528380 -16852141 - MER31A LTR ERV1 -82 403 310 186 43 0 0 chr15 84528511 84528534 -16851987 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 295 239 34 10 chr15 84528582 84528678 -16851843 - MIR SINE MIR -63 145 57 2510 80 0 0 chr15 84529038 84529340 -16851181 - AluY SINE Alu -8 303 2 2296 117 7 0 chr15 84529969 84530268 -16850253 - AluSx SINE Alu -11 301 1 337 373 35 5 chr15 84530281 84530482 -16850039 + MIR SINE MIR 54 260 -2 277 250 189 61 chr15 84530542 84530738 -16849783 + LTR16A LTR ERVL 8 228 -229 2625 131 17 33 chr15 84530738 84531074 -16849447 + LTR45B LTR ERV1 3 441 -162 1861 132 59 0 chr15 84531074 84531347 -16849174 + AluSx SINE Alu 1 289 -23 2625 131 17 33 chr15 84531347 84531442 -16849079 + LTR45B LTR ERV1 441 536 -67 407 189 52 130 chr15 84531500 84531719 -16848802 + LTR16A LTR ERVL 225 418 -39 240 274 69 51 chr15 84531881 84532056 -16848465 - MIR SINE MIR 0 262 85 2162 129 0 3 chr15 84532146 84532448 -16848073 + AluSg SINE Alu 1 301 -9 1212 208 127 27 chr15 84532470 84532802 -16847719 - MLT1A1 LTR MaLR 0 365 1 2269 112 0 22 chr15 84532944 84533258 -16847263 + AluSg SINE Alu 1 307 -3 400 339 70 12 chr15 84533362 84533619 -16846902 - L3 LINE CR1 -265 1312 1041 1471 160 49 4 chr15 84534001 84534264 -16846257 - MER39 LTR ERV1 -27 680 406 419 163 109 0 chr15 84534285 84534377 -16846144 - L1MD3 LINE L1 -12 7983 7882 1795 43 0 0 chr15 84534389 84534598 -16845923 - L1PA3 LINE L1 -7 6148 5940 1317 179 127 7 chr15 84534599 84534931 -16845590 - MER39 LTR ERV1 -281 372 8 252 330 9 9 chr15 84535020 84535135 -16845386 - MIR SINE MIR 0 262 148 407 322 41 0 chr15 84536612 84536758 -16843763 + MIR SINE MIR 2 153 -109 415 345 26 13 chr15 84536798 84537024 -16843497 + MIR SINE MIR 34 262 0 22 94 0 0 chr15 84537024 84537088 -16843433 + AT_rich Low_complexity Low_complexity 1 64 0 796 151 125 13 chr15 84537385 84537537 -16842984 - FRAM SINE Alu -9 167 1 1911 149 42 44 chr15 84537645 84537710 -16842811 + MER31B LTR ERV1 1 65 -401 1490 188 38 24 chr15 84537710 84537997 -16842524 - AluJo SINE Alu -8 304 14 1911 149 42 44 chr15 84537997 84538314 -16842207 + MER31B LTR ERV1 65 382 -84 1087 165 87 10 chr15 84538369 84538575 -16841946 + MER31A LTR ERV1 1 222 -263 275 198 86 12 chr15 84538726 84538807 -16841714 - MIR SINE MIR -107 155 69 297 314 93 0 chr15 84539152 84539270 -16841251 - L2 LINE L2 0 3272 3144 244 321 114 0 chr15 84539363 84539494 -16841027 - L2 LINE L2 -330 2983 2838 357 200 107 0 chr15 84539518 84539593 -16840928 + MLT1J2 LTR MaLR 9 91 -359 365 353 18 6 chr15 84539657 84539824 -16840697 - L2 LINE L2 -181 3091 2923 256 279 0 0 chr15 84539969 84540030 -16840491 + GA-rich Low_complexity Low_complexity 2 62 0 993 195 45 0 chr15 84540873 84541073 -16839448 - MER3 DNA MER1_type 0 209 1 855 201 7 7 chr15 84541193 84541347 -16839174 - FRAM SINE Alu -12 154 1 2309 105 3 0 chr15 84541359 84541655 -16838866 - AluSp SINE Alu -15 298 2 466 337 27 0 chr15 84543037 84543221 -16837300 + MIR SINE MIR 9 197 -65 258 318 76 28 chr15 84544340 84544551 -16835970 + L2 LINE L2 2849 3069 -203 354 80 20 0 chr15 84545403 84545453 -16835068 - MADE1 DNA Mariner -29 51 1 2272 53 0 7 chr15 84546271 84546555 -16833966 - L1PA3 LINE L1 0 6155 5874 1101 157 0 0 chr15 84546578 84546744 -16833777 - AluSg/x SINE Alu -13 297 132 1775 141 4 14 chr15 84546744 84547020 -16833501 - AluSx SINE Alu -15 297 25 470 236 9 9 chr15 84547056 84547162 -16833359 + MER5B DNA MER1_type 2 107 -71 400 299 45 7 chr15 84548191 84548345 -16832176 + MIR SINE MIR 41 200 -62 192 231 0 0 chr15 84548358 84548397 -16832124 - L3 LINE CR1 -457 1120 1082 192 77 0 0 chr15 84548820 84548846 -16831675 + (CA)n Simple_repeat Simple_repeat 1 26 0 1584 78 0 23 chr15 84549146 84549363 -16831158 - AluY SINE Alu -9 302 91 782 239 17 17 chr15 84549363 84549539 -16830982 - MER58A DNA MER1_type -11 213 38 925 183 11 22 chr15 84549632 84549812 -16830709 + L1PA16 LINE L1 5969 6146 -20 485 301 36 6 chr15 84549933 84550099 -16830422 - MIR SINE MIR -49 213 43 560 249 73 78 chr15 84550284 84550471 -16830050 + MLT1H1 LTR MaLR 16 202 -353 2141 129 0 0 chr15 84550471 84550758 -16829763 - AluSx SINE Alu -25 287 1 560 249 73 78 chr15 84550758 84550913 -16829608 + MLT1H1 LTR MaLR 202 356 -199 646 184 81 60 chr15 84550913 84551098 -16829423 - MER53 DNA DNA 0 189 1 560 249 73 78 chr15 84551098 84551235 -16829286 + MLT1H1 LTR MaLR 356 550 -5 411 73 0 0 chr15 84551855 84551910 -16828611 + (CA)n Simple_repeat Simple_repeat 1 55 0 388 266 43 36 chr15 84552363 84552502 -16828019 - MER5A DNA MER1_type -26 163 24 436 301 57 57 chr15 84554328 84554574 -16825947 - MER102b DNA MER1_type 0 341 96 424 277 9 27 chr15 84554590 84554702 -16825819 + MLT1I LTR MaLR 100 209 -200 245 220 90 40 chr15 84554704 84554804 -16825717 - LTR48 LTR ERV1 -7 780 676 269 271 74 33 chr15 84555237 84555359 -16825162 + MLT1I LTR MaLR 283 409 0 2501 84 0 0 chr15 84555791 84556090 -16824431 + AluSp SINE Alu 1 299 -14 21 0 0 0 chr15 84556340 84556361 -16824160 + AT_rich Low_complexity Low_complexity 1 21 0 385 317 0 0 chr15 84556409 84556532 -16823989 - MIR SINE MIR -109 153 31 1253 176 23 18 chr15 84557271 84557492 -16823029 - MER58A DNA MER1_type 0 224 3 3212 155 19 6 chr15 84557782 84558325 -16822196 + MER39B LTR ERV1 1 427 -115 7749 153 33 21 chr15 84558335 84559782 -16820739 + L1M2 LINE L1 3926 5395 -834 2257 103 7 3 chr15 84559782 84560083 -16820438 + AluSx SINE Alu 1 302 -10 7749 153 33 21 chr15 84560083 84560152 -16820369 + L1M2 LINE L1 5395 5462 -767 1099 252 90 23 chr15 84561727 84561790 -16818731 - L1ME1 LINE L1 -5 6161 6104 2211 102 0 7 chr15 84561790 84562083 -16818438 - AluSx SINE Alu -21 291 1 1099 252 90 23 chr15 84562083 84562364 -16818157 - L1ME1 LINE L1 -62 6104 5794 301 141 50 71 chr15 84562373 84562472 -16818049 - MER34 LTR ERV1 -6 536 440 491 238 47 8 chr15 84562824 84562972 -16817549 - L1ME1 LINE L1 -379 5787 5644 415 162 0 81 chr15 84562976 84562998 -16817523 + MLT1B LTR MaLR 35 57 -333 1653 170 113 3 chr15 84562998 84563327 -16817194 - MLT1A1 LTR MaLR 0 365 1 415 162 0 81 chr15 84563327 84563403 -16817118 + MLT1B LTR MaLR 57 125 -265 1327 160 53 21 chr15 84563876 84564157 -16816364 + MLT1B LTR MaLR 98 387 -3 353 252 9 18 chr15 84564170 84564281 -16816240 - L1MC4a LINE L1 -1916 5892 5783 192 253 111 105 chr15 84564285 84564447 -16816074 - MIR SINE MIR -79 183 21 1596 174 10 42 chr15 84564627 84564938 -16815583 - AluJb SINE Alu -11 301 1 292 244 122 11 chr15 84566322 84566412 -16814109 + MLT1J2 LTR MaLR 349 448 -2 376 348 14 28 chr15 84567316 84567457 -16813064 - MER91A DNA MER1_type -51 145 7 1016 230 102 85 chr15 84568242 84568760 -16811761 - L2 LINE L2 -518 2796 2270 258 179 36 0 chr15 84568754 84568810 -16811711 + L2 LINE L2 2453 2510 -804 * 1166 267 88 17 chr15 84568811 84569361 -16811160 + L2 LINE L2 2730 3313 0 2375 77 0 23 chr15 84569627 84569937 -16810584 - AluY SINE Alu -8 303 1 734 241 22 56 chr15 84570230 84570462 -16810059 - MIR SINE MIR -21 241 18 2271 108 0 7 chr15 84571164 84571470 -16809051 - AluSx SINE Alu -8 304 1 241 337 159 6 chr15 84571553 84571716 -16808805 - MIR3 SINE MIR -9 199 12 2313 109 0 3 chr15 84572151 84572455 -16808066 - AluSg SINE Alu -7 303 1 457 253 208 7 chr15 84572766 84572920 -16807601 + MIR3 SINE MIR 21 205 -3 284 258 226 48 chr15 84572958 84573144 -16807377 + MIR SINE MIR 38 256 -6 227 238 0 0 chr15 84573214 84573256 -16807265 + polypyrimidine Low_complexity Low_complexity 4 45 0 276 305 102 49 chr15 84573260 84573506 -16807015 - L2 LINE L2 -10 3262 3004 215 149 0 21 chr15 84574476 84574523 -16805998 + (TCC)n Simple_repeat Simple_repeat 1 46 0 1646 195 0 20 chr15 84575830 84576133 -16804388 + AluJo SINE Alu 1 297 -15 885 258 110 17 chr15 84576185 84576484 -16804037 - MLT1E LTR MaLR -243 350 24 655 291 76 0 chr15 84577900 84578137 -16802384 - MIR SINE MIR -2 260 6 192 333 36 77 chr15 84579295 84579463 -16801058 + MIR3 SINE MIR 20 180 -28 2553 269 69 38 chr15 84579494 84580214 -16800307 + L1MEc LINE L1 786 1482 -4733 2135 135 3 0 chr15 84580214 84580518 -16800003 + AluSx SINE Alu 1 305 -7 2553 269 69 38 chr15 84580518 84581618 -16798903 + L1MEc LINE L1 1482 2620 -3595 790 222 11 22 chr15 84581634 84581814 -16798707 - MLT1A1 LTR MaLR -2 363 186 1187 60 0 0 chr15 84581827 84581977 -16798544 - L1PA4 LINE L1 0 6155 6006 6425 29 0 0 chr15 84582082 84583219 -16797302 - L1PA4 LINE L1 -153 6002 4866 999 215 15 5 chr15 84583219 84583414 -16797107 - MLT1A1 LTR MaLR -168 197 1 1486 245 70 33 chr15 84583426 84583632 -16796889 + L1MEc LINE L1 2708 2905 -3310 2648 136 35 23 chr15 84583632 84584059 -16796462 + MSTB1 LTR MaLR 1 432 0 1486 245 70 33 chr15 84584059 84584391 -16796130 + L1MEc LINE L1 2905 3266 -2949 3702 151 19 5 chr15 84584436 84585025 -16795496 + LTR26 LTR ERV1 1 597 -6 1518 168 59 91 chr15 84586005 84586380 -16794141 - MLT1A1 LTR MaLR 0 365 3 719 274 30 17 chr15 84587049 84587279 -16793242 - MIR SINE MIR 0 262 30 2324 95 0 13 chr15 84587516 84587820 -16792701 + AluSx SINE Alu 1 300 -12 924 351 42 9 chr15 84588004 84588451 -16792070 - L3 LINE CR1 -659 918 457 1729 187 137 5 chr15 84588505 84588941 -16791580 + MER77 LTR ERV1 54 601 -4 191 176 392 0 chr15 84590839 84590913 -16789608 - MER5A DNA MER1_type -80 109 7 473 245 64 53 chr15 84591118 84591306 -16789215 + MIR SINE MIR 2 191 -71 707 264 17 0 chr15 84592563 84592737 -16787784 - MER5B DNA MER1_type 0 178 2 2141 121 13 3 chr15 84592971 84593269 -16787252 - AluSx SINE Alu -11 301 1 210 342 68 8 chr15 84593302 84593419 -16787102 - MIR3 SINE MIR -27 181 58 420 277 37 27 chr15 84594794 84594982 -16785539 + MIR SINE MIR 23 212 -50 255 293 133 13 chr15 84596265 84596415 -16784106 - MIR SINE MIR -6 256 89 404 214 0 10 chr15 84596718 84596821 -16783700 + (TCCA)n Simple_repeat Simple_repeat 4 105 0 250 271 0 0 chr15 84598524 84598572 -16781949 + polypyrimidine Low_complexity Low_complexity 2 49 0 1145 237 65 7 chr15 84598683 84598991 -16781530 - L1ME3A LINE L1 -291 5879 5554 499 273 34 67 chr15 84599177 84599261 -16781260 - MIR SINE MIR 0 262 177 2119 111 7 7 chr15 84599261 84599559 -16780962 - AluSx SINE Alu -14 298 1 499 273 34 67 chr15 84599559 84599712 -16780809 - MIR SINE MIR -85 177 33 1030 198 75 19 chr15 84599908 84600120 -16780401 - MER58A DNA MER1_type 0 224 1 373 293 225 4 chr15 84600695 84600944 -16779577 + L2 LINE L2 3008 3311 -2 578 285 92 0 chr15 84601937 84602144 -16778377 - MIR SINE MIR -11 251 26 22 35 0 0 chr15 84604401 84604430 -16776091 + AT_rich Low_complexity Low_complexity 1 29 0 1933 205 10 32 chr15 84604525 84604929 -16775592 - MSTD LTR MaLR -1 395 1 405 294 53 29 chr15 84605500 84605798 -16774723 + L1MDa LINE L1 1287 1601 -4929 1029 231 38 48 chr15 84606375 84606665 -16773856 - LTR16A LTR ERVL -14 436 150 3291 212 67 36 chr15 84606682 84607456 -16773065 - MER21B LTR ERV1 -47 816 19 469 188 69 20 chr15 84607454 84607555 -16772966 - MER21B LTR ERV1 -757 106 1 * 252 0 0 0 chr15 84607577 84607605 -16772916 + (T)n Simple_repeat Simple_repeat 1 28 0 444 293 9 0 chr15 84607748 84607864 -16772657 + MIR SINE MIR 32 148 -60 938 228 55 113 chr15 84607876 84608399 -16772122 + MER113 DNA MER1_type? 1 493 -28 6179 148 21 13 chr15 84609102 84610963 -16769558 - L1MA4A LINE L1 -2 7003 5133 1031 175 5 14 chr15 84610973 84611196 -16769325 + L1 LINE L1 2951 3171 -2975 5662 179 39 60 chr15 84611211 84611471 -16769050 - L1MA4A LINE L1 -1717 5131 4867 1866 94 112 8 chr15 84611471 84611738 -16768783 - AluSg SINE Alu -13 297 3 5662 179 39 60 chr15 84611738 84612956 -16767565 - L1MA4A LINE L1 -1981 4867 3685 4660 127 43 57 chr15 84613826 84614622 -16765899 - LTR1 LTR ERV1 0 785 1 672 151 43 22 chr15 84614641 84614780 -16765741 + MLT2C2 LTR ERVL 1 142 -322 367 353 69 10 chr15 84615125 84615329 -16765192 + MIR SINE MIR 32 247 -15 526 111 12 0 chr15 84617069 84617150 -16763371 + MSTB LTR MaLR 1 82 -344 1266 158 58 82 chr15 84617258 84617465 -16763056 + MLT2C2 LTR ERVL 144 355 -109 1905 144 7 7 chr15 84617465 84617770 -16762751 + AluSx SINE Alu 1 305 -7 1266 158 58 82 chr15 84617770 84617851 -16762670 + MLT2C2 LTR ERVL 355 426 -38 612 0 0 0 chr15 84617851 84617919 -16762602 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 1266 158 58 82 chr15 84617919 84617958 -16762563 + MLT2C2 LTR ERVL 426 464 0 2282 114 7 0 chr15 84618012 84618319 -16762202 - AluSc SINE Alu 0 309 1 238 346 23 23 chr15 84618436 84618569 -16761952 - MER5B DNA MER1_type -17 161 29 287 339 183 37 chr15 84618624 84619007 -16761514 + L2 LINE L2 2826 3264 -8 1085 211 20 5 chr15 84619756 84619960 -16760561 - MER21B LTR ERV1 -427 436 230 1520 252 96 33 chr15 84620071 84620623 -16759898 - L1ME4a LINE L1 -208 5913 5327 2419 90 7 0 chr15 84620901 84621288 -16759233 - AluSx SINE Alu 0 389 1 227 324 28 28 chr15 84621346 84621454 -16759067 + L2 LINE L2 3143 3250 -22 15763 175 13 64 chr15 84623274 84624148 -16756373 - L1MA4A LINE L1 -3303 3545 2628 1999 144 0 7 chr15 84624148 84624446 -16756075 - AluSx SINE Alu -14 298 3 15763 175 13 64 chr15 84624446 84627305 -16753216 - L1MA4A LINE L1 -4220 2628 3 706 216 103 39 chr15 84628576 84628780 -16751741 + MER20 DNA MER1_type 1 217 -2 592 264 109 20 chr15 84629435 84629636 -16750885 + MIR SINE MIR 31 249 -13 2273 79 0 4 chr15 84630862 84631169 -16749352 + AluSc SINE Alu 1 306 0 2326 181 46 25 chr15 84631385 84631903 -16748618 - MER69 DNA AcHobo 0 2526 1998 987 263 70 2 chr15 84631887 84632344 -16748177 - MER69 DNA AcHobo -658 568 1 * 2868 124 18 23 chr15 84632375 84632810 -16747711 - Tigger2a DNA MER2_type 0 434 2 350 304 17 17 chr15 84632827 84632942 -16747579 + MIR3 SINE MIR 62 176 -32 3103 127 12 16 chr15 84633928 84634417 -16746104 + MER1A DNA MER1_type 1 487 -42 411 298 87 50 chr15 84634732 84634950 -16745571 + L2 LINE L2 2063 2288 -1026 366 266 21 0 chr15 84634950 84635044 -16745477 - MER94 DNA DNA -1 133 38 190 243 0 0 chr15 84635081 84635118 -16745403 + L2 LINE L2 2708 2744 -570 323 241 12 27 chr15 84635339 84635421 -16745100 - MIR SINE MIR -85 123 44 2271 205 92 29 chr15 84635476 84635997 -16744524 + MLT2B3 LTR ERVL 1 554 0 210 71 0 0 chr15 84636040 84636068 -16744453 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 355 211 95 11 chr15 84636590 84636685 -16743836 - MIR SINE MIR -48 214 112 209 330 34 0 chr15 84636915 84637003 -16743518 - MER5B DNA MER1_type -43 135 45 265 324 184 10 chr15 84637974 84638181 -16742340 - MIR SINE MIR 0 262 20 315 150 0 0 chr15 84638758 84638818 -16741703 + (TG)n Simple_repeat Simple_repeat 1 60 0 244 190 25 0 chr15 84639074 84639153 -16741368 + (TTCA)n Simple_repeat Simple_repeat 2 82 0 373 333 51 7 chr15 84639473 84639611 -16740910 - MER91B DNA MER1_type 0 190 47 255 288 144 23 chr15 84639696 84639828 -16740693 + L2 LINE L2 3122 3269 -3 2178 128 0 3 chr15 84640003 84640300 -16740221 - AluSx SINE Alu -16 296 1 280 331 86 46 chr15 84640521 84640696 -16739825 + L3 LINE CR1 1334 1515 -62 387 215 28 75 chr15 84641468 84641575 -16738946 + MLT1F1 LTR MaLR 35 136 -431 539 227 164 22 chr15 84641575 84641800 -16738721 + L1MD3 LINE L1 7423 7679 -316 3507 132 36 6 chr15 84641800 84642332 -16738189 + MER4D LTR ERV1 1 548 -355 1469 133 0 0 chr15 84642332 84642543 -16737978 - AluSg/x SINE Alu -2 310 100 1322 119 0 5 chr15 84642643 84642836 -16737685 + AluSg/x SINE Alu 118 309 -3 675 209 51 0 chr15 84642874 84643032 -16737489 + L1MD3 LINE L1 7829 7994 -1 862 318 45 36 chr15 84646093 84646533 -16733988 + MLT1J2 LTR MaLR 1 444 -6 2374 117 64 0 chr15 84646580 84646922 -16733599 - THE1B LTR MaLR 0 364 1 185 391 14 0 chr15 84647331 84647400 -16733121 + L2 LINE L2 3150 3219 -53 1033 159 53 97 chr15 84648039 84648266 -16732255 + MER20 DNA MER1_type 3 219 0 28 0 0 0 chr15 84648793 84648821 -16731700 + AT_rich Low_complexity Low_complexity 1 28 0 368 316 70 43 chr15 84648859 84649046 -16731475 - MIR3 SINE MIR -2 206 15 705 241 43 154 chr15 84649233 84649855 -16730666 - MLT1H1 LTR MaLR -2 553 1 253 279 27 72 chr15 84649979 84650090 -16730431 + MIR SINE MIR 82 187 -75 1750 117 47 47 chr15 84650145 84650444 -16730077 + AluJb SINE Alu 1 299 -13 390 280 30 30 chr15 84651451 84651619 -16728902 - MIR SINE MIR -7 255 88 631 341 81 54 chr15 84651653 84652096 -16728425 + L2 LINE L2 2817 3271 -1 24 32 0 0 chr15 84652312 84652343 -16728178 + AT_rich Low_complexity Low_complexity 1 31 0 417 282 110 40 chr15 84652497 84652724 -16727797 - L3b LINE CR1 -155 1428 1186 2268 109 0 3 chr15 84653084 84653387 -16727134 - AluSg SINE Alu -3 307 6 1857 153 42 134 chr15 84653426 84653902 -16726619 + MSTB1 LTR MaLR 1 432 0 298 287 66 33 chr15 84654079 84654201 -16726320 - L2 LINE L2 -1 3271 3146 974 237 32 28 chr15 84654201 84654450 -16726071 + MLT1H1 LTR MaLR 1 250 -305 1231 246 14 10 chr15 84654551 84654839 -16725682 + MLT1H1 LTR MaLR 267 555 0 211 296 62 0 chr15 84654971 84655052 -16725469 - MER91C DNA MER1_type -48 92 7 228 270 81 27 chr15 84655990 84656101 -16724420 - MLT1L LTR MaLR -44 571 455 254 336 87 39 chr15 84656109 84656442 -16724079 - MLT1L LTR MaLR -266 349 1 436 123 31 0 chr15 84656840 84656905 -16723616 - 5S rRNA rRNA -12 109 43 344 304 93 25 chr15 84656998 84657159 -16723362 + L2 LINE L2 3101 3272 0 239 261 14 29 chr15 84657226 84657295 -16723226 + CT-rich Low_complexity Low_complexity 5 72 0 646 123 208 0 chr15 84658063 84658169 -16722352 + AluY SINE Alu 1 128 -183 29 78 0 0 chr15 84658281 84658345 -16722176 + AT_rich Low_complexity Low_complexity 1 64 0 254 118 176 137 chr15 84658756 84658858 -16721663 - MER96B DNA MER1_type? -280 137 32 389 333 71 75 chr15 84659009 84659572 -16720949 - L2 LINE L2 -5 3267 2706 1863 155 17 0 chr15 84659937 84660228 -16720293 + AluY SINE Alu 1 296 -15 235 239 0 0 chr15 84661937 84661983 -16718538 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 3926 73 9 2 chr15 84662158 84662689 -16717832 + L1PA13 LINE L1 5629 6163 0 1509 194 161 2 chr15 84662703 84663106 -16717415 - MLT1C LTR MaLR 0 467 1 579 246 212 58 chr15 84663566 84663859 -16716662 - L2 LINE L2 -8 3305 2968 646 243 31 43 chr15 84663886 84664022 -16716499 + MIR SINE MIR 18 150 -112 1896 148 52 0 chr15 84664022 84664347 -16716174 - MER2 DNA MER2_type -1 343 2 646 243 31 43 chr15 84664347 84664426 -16716095 + MIR SINE MIR 150 228 -34 33892 98 11 11 chr15 84665001 84668777 -16711744 + L1P LINE L1 11 3787 -2359 3233 30 15 0 chr15 84668777 84669167 -16711354 + L1PA3 LINE L1 5753 6155 0 33892 98 11 11 chr15 84669167 84670592 -16709929 + L1P LINE L1 3787 5211 -935 6912 58 8 3 chr15 84670696 84671712 -16708809 + L1PA6 LINE L1 5135 6154 0 332 324 142 24 chr15 84671782 84672112 -16708409 - L1MC5 LINE L1 -70 7891 7523 1750 151 68 4 chr15 84673224 84673503 -16707018 + AluJb SINE Alu 1 297 -15 274 324 95 50 chr15 84673714 84673866 -16706655 + MIR SINE MIR 5 173 -89 1641 160 19 100 chr15 84673866 84673948 -16706573 - MLT1B LTR MaLR -3 387 300 2055 143 7 7 chr15 84673948 84674255 -16706266 - AluSq SINE Alu -2 311 5 1641 160 19 100 chr15 84674255 84674591 -16705930 - MLT1B LTR MaLR -90 300 3 274 324 95 50 chr15 84674591 84674679 -16705842 + MIR SINE MIR 173 256 -6 2263 129 7 0 chr15 84674818 84675128 -16705393 - AluSx SINE Alu 0 312 1 404 341 64 6 chr15 84677231 84677404 -16703117 - MIR SINE MIR -60 202 20 333 252 122 0 chr15 84677995 84678134 -16702387 + MER103 DNA DNA 11 166 0 189 0 0 0 chr15 84678138 84678159 -16702362 + (T)n Simple_repeat Simple_repeat 1 21 0 185 324 0 42 chr15 84678399 84678470 -16702051 - L3 LINE CR1 -1316 261 194 631 296 69 9 chr15 84679337 84679553 -16700968 - MIR SINE MIR -22 240 12 196 306 81 9 chr15 84679879 84679990 -16700531 + MIR SINE MIR 89 207 -55 1698 188 28 0 chr15 84681193 84681480 -16699041 + AluJo SINE Alu 1 295 -17 2152 148 0 0 chr15 84681484 84681788 -16698733 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr15 84681809 84681831 -16698690 + AT_rich Low_complexity Low_complexity 1 22 0 271 250 54 22 chr15 84684068 84684160 -16696361 - MIR3 SINE MIR -9 199 105 2256 131 0 0 chr15 84685272 84685584 -16694937 - AluSx SINE Alu 0 312 1 212 250 0 0 chr15 84686030 84686074 -16694447 + L2 LINE L2 3269 3312 -1 191 264 209 0 chr15 84686118 84686209 -16694312 - L2 LINE L2 0 3313 3204 202 313 87 35 chr15 84686310 84686425 -16694096 - L2 LINE L2 -260 3053 2933 428 260 90 35 chr15 84686435 84686747 -16693774 + L1ME4a LINE L1 5568 5896 -225 439 298 112 38 chr15 84686751 84686993 -16693528 - L1MC/D LINE L1 -569 5552 5301 4192 265 83 32 chr15 84686995 84687513 -16693008 + L1ME1 LINE L1 83 573 -5823 1676 172 58 6 chr15 84687513 84687839 -16692682 + MER2 DNA MER2_type 2 344 0 4192 265 83 32 chr15 84687839 84688601 -16691920 + L1ME1 LINE L1 573 1294 -5102 2139 130 0 3 chr15 84688601 84688909 -16691612 + AluSx SINE Alu 1 307 -5 4192 265 83 32 chr15 84688909 84689681 -16690840 + L1ME1 LINE L1 1294 2242 -4154 2999 107 14 0 chr15 84689794 84690232 -16690289 + L1PB1 LINE L1 5708 6151 0 5086 143 33 10 chr15 84690268 84691226 -16689295 - L1MA4A LINE L1 -5 7360 6381 12303 173 22 32 chr15 84691308 84694177 -16686344 - L1MA4A LINE L1 -814 6394 3555 3028 183 92 43 chr15 84694173 84695044 -16685477 - L1MA4A LINE L1 -5886 1323 114 * 4463 243 34 12 chr15 84695085 84696071 -16684450 + L1ME1 LINE L1 2295 3324 -2891 2014 141 7 3 chr15 84696071 84696377 -16684144 + AluSc SINE Alu 1 307 -2 4463 243 34 12 chr15 84696377 84696848 -16683673 + L1ME1 LINE L1 3324 3783 -2432 484 165 0 0 chr15 84696857 84696942 -16683579 + L1MB5 LINE L1 5783 5867 -307 435 151 0 0 chr15 84696947 84697020 -16683501 - LTR35 LTR ERV1 -4 614 542 * 1945 98 0 49 chr15 84697012 84697317 -16683204 - LTR35 LTR ERV1 -228 390 101 4866 231 44 25 chr15 84697321 84699733 -16680788 + L1ME1 LINE L1 3771 6228 -7 29 78 0 0 chr15 84699842 84699906 -16680615 + AT_rich Low_complexity Low_complexity 1 64 0 296 303 20 0 chr15 84700265 84700364 -16680157 + CT-rich Low_complexity Low_complexity 2 102 0 338 298 58 58 chr15 84701361 84701532 -16678989 - MIR3 SINE MIR -4 204 34 207 100 0 0 chr15 84702462 84702492 -16678029 + (T)n Simple_repeat Simple_repeat 1 30 0 1490 59 5 0 chr15 84702534 84702736 -16677785 - L1P LINE L1 -4518 1628 1426 * 1638 39 0 0 chr15 84702735 84702943 -16677578 + L1PA5 LINE L1 4547 4754 -1392 7281 40 6 2 chr15 84702943 84703958 -16676563 + L1PA5 LINE L1 5124 6148 -6 1501 117 65 8 chr15 84704186 84704434 -16676087 + L1PA11 LINE L1 5912 6173 -1 426 305 123 11 chr15 84704798 84704985 -16675536 - MIR SINE MIR -51 211 4 2260 97 3 16 chr15 84705792 84706101 -16674420 + AluSq SINE Alu 1 305 -8 21 0 0 0 chr15 84706439 84706460 -16674061 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr15 84706501 84706523 -16673998 + AT_rich Low_complexity Low_complexity 1 22 0 1209 149 36 117 chr15 84706548 84706829 -16673692 + AluJo SINE Alu 25 282 -30 306 180 0 0 chr15 84706852 84706913 -16673608 + (CA)n Simple_repeat Simple_repeat 2 62 0 57 82 0 25 chr15 84706932 84707128 -16673393 + AT_rich Low_complexity Low_complexity 1 191 0 353 294 84 44 chr15 84707280 84707623 -16672898 + L1ME4a LINE L1 5589 5945 -176 37 39 0 0 chr15 84707739 84707790 -16672731 + AT_rich Low_complexity Low_complexity 1 51 0 885 272 91 16 chr15 84758780 84759118 -16621403 - L1M4 LINE L1 -511 5651 5296 1264 234 19 0 chr15 84759350 84759657 -16620864 - AluSq SINE Alu 0 313 1 2181 122 0 16 chr15 84760153 84760464 -16620057 - AluSx SINE Alu -6 306 1 25 75 0 0 chr15 84760777 84760830 -16619691 + AT_rich Low_complexity Low_complexity 1 53 0 1795 196 65 67 chr15 84760896 84761402 -16619119 + MLT1D LTR MaLR 1 505 0 1649 165 103 34 chr15 84761612 84761999 -16618522 + MER110A LTR ERV1 1 414 -54 772 185 30 0 chr15 84762025 84762160 -16618361 - MLT1D LTR MaLR -3 502 364 1021 302 3 10 chr15 84762367 84762698 -16617823 + AluSq SINE Alu 1 329 0 240 111 0 0 chr15 84763043 84763079 -16617442 + (CTG)n Simple_repeat Simple_repeat 3 38 0 243 170 0 0 chr15 84763118 84763165 -16617356 + GA-rich Low_complexity Low_complexity 3 49 0 730 249 6 6 chr15 84763249 84763414 -16617107 - MIR SINE MIR -89 173 9 858 266 5 0 chr15 84763414 84763602 -16616919 - MER5A DNA MER1_type 0 189 1 1226 177 5 0 chr15 84764113 84764299 -16616222 - MER5A DNA MER1_type -2 187 1 310 347 36 62 chr15 84764524 84764798 -16615723 - L2 LINE L2 -4 3268 3002 262 265 92 83 chr15 84765094 84765362 -16615159 - L2 LINE L2 -236 3036 2768 2308 106 0 0 chr15 84765371 84765673 -16614848 - AluSg SINE Alu -8 302 1 801 168 50 31 chr15 84765860 84766021 -16614500 - L1MB3 LINE L1 -5 6178 6015 323 298 0 50 chr15 84766021 84766162 -16614359 - L2 LINE L2 -600 2714 2581 211 283 0 0 chr15 84766164 84766210 -16614311 - MIR SINE MIR -132 76 31 681 265 42 33 chr15 84766361 84766576 -16613945 - MIR SINE MIR -27 235 19 240 234 0 0 chr15 84766832 84766879 -16613642 - MER96 DNA MER1_type? -77 98 52 1900 147 10 3 chr15 84767624 84767917 -16612604 + AluSx SINE Alu 1 295 -17 22 0 0 0 chr15 84767965 84767987 -16612534 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr15 84768490 84768519 -16612002 + AT_rich Low_complexity Low_complexity 1 29 0 257 191 274 12 chr15 84770541 84770625 -16609896 + MER91C DNA MER1_type 12 117 -23 1039 167 16 52 chr15 84770683 84770838 -16609683 - MER58A DNA MER1_type -2197 223 75 2054 141 0 3 chr15 84770838 84771129 -16609392 - AluSc SINE Alu -19 290 1 1039 167 16 52 chr15 84771129 84771165 -16609356 - MER58A DNA MER1_type -2345 75 39 982 172 108 34 chr15 84771193 84771397 -16609124 - MER20 DNA MER1_type 0 219 1 220 296 0 91 chr15 84772713 84772801 -16607720 - L2 LINE L2 -46 3226 3147 629 206 53 8 chr15 84773096 84773227 -16607294 - MER58A DNA MER1_type -51 173 37 388 325 20 30 chr15 84773861 84774058 -16606463 + L3b LINE CR1 1125 1319 -264 * 509 314 130 49 chr15 84774057 84774525 -16605996 + L2 LINE L2 2806 3311 -2 2009 173 48 0 chr15 84775264 84775594 -16604927 + MER7A DNA MER2_type 3 346 0 645 291 110 18 chr15 84775934 84776216 -16604305 + L3 LINE CR1 1270 1577 0 2163 115 7 0 chr15 84778745 84779049 -16601472 + AluY SINE Alu 1 306 -5 947 234 27 0 chr15 84779228 84779412 -16601109 - MER63A DNA MER1_type -20 190 2 586 342 79 8 chr15 84779984 84780224 -16600297 + MIR SINE MIR 6 262 0 668 239 45 25 chr15 84781142 84781343 -16599178 + L1ME3 LINE L1 5956 6160 -2 816 194 15 10 chr15 84781589 84781785 -16598736 + L1MA6 LINE L1 6093 6289 -11 21 0 0 0 chr15 84781790 84781811 -16598710 + AT_rich Low_complexity Low_complexity 1 21 0 2019 208 35 53 chr15 84782868 84783168 -16597353 - MLT1D LTR MaLR 0 505 216 2241 85 0 53 chr15 84783168 84783486 -16597035 - AluSc SINE Alu -8 301 1 2019 208 35 53 chr15 84783486 84783694 -16596827 - MLT1D LTR MaLR -289 216 6 21 0 0 0 chr15 84784533 84784554 -16595967 + AT_rich Low_complexity Low_complexity 1 21 0 338 244 47 47 chr15 84786097 84786290 -16594231 - Charlie7 DNA MER1_type -1 2611 2419 * 646 277 168 35 chr15 84786289 84786748 -16593773 - Charlie7 DNA MER1_type -1897 715 196 469 235 23 8 chr15 84786906 84787038 -16593483 - Charlie7 DNA MER1_type -2450 162 29 767 195 51 41 chr15 84787919 84788114 -16592407 + MIR SINE MIR 66 262 0 419 268 76 19 chr15 84788372 84788529 -16591992 + MIR SINE MIR 36 201 -61 257 268 85 0 chr15 84788575 84788657 -16591864 - L2 LINE L2 -13 3259 3171 379 303 9 18 chr15 84788698 84788807 -16591714 - L2 LINE L2 -219 3053 2946 21 36 0 0 chr15 84789191 84789219 -16591302 + AT_rich Low_complexity Low_complexity 1 28 0 402 74 0 0 chr15 84789345 84789399 -16591122 + (TG)n Simple_repeat Simple_repeat 2 55 0 21 36 0 0 chr15 84789843 84789871 -16590650 + AT_rich Low_complexity Low_complexity 1 28 0 402 74 0 0 chr15 84789997 84790051 -16590470 + (TG)n Simple_repeat Simple_repeat 2 55 0 375 304 59 7 chr15 84791680 84791815 -16588706 + MIR SINE MIR 3 144 -118 208 245 20 0 chr15 84792294 84792343 -16588178 + CT-rich Low_complexity Low_complexity 5 54 0 1867 140 6 37 chr15 84793809 84794131 -16586390 + AluJb SINE Alu 1 312 0 204 323 177 32 chr15 84794275 84794433 -16586088 - MIR3 SINE MIR -13 195 15 205 49 0 73 chr15 84796322 84796363 -16584158 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 587 303 39 17 chr15 84796681 84796919 -16583602 + MIR SINE MIR 18 260 -2 25 0 0 0 chr15 84797001 84797026 -16583495 + AT_rich Low_complexity Low_complexity 1 25 0 2660 109 40 0 chr15 84798159 84798509 -16582012 + THE1B LTR MaLR 1 364 0 237 263 0 0 chr15 84798890 84798947 -16581574 + T-rich Low_complexity Low_complexity 1 57 0 31 0 0 0 chr15 84798957 84798988 -16581533 + AT_rich Low_complexity Low_complexity 1 31 0 5412 159 18 44 chr15 84798989 84800500 -16580021 - L1MA7 LINE L1 0 6291 4817 464 264 38 13 chr15 84800676 84800835 -16579686 - MER103 DNA DNA 0 166 4 313 262 50 57 chr15 84801358 84801499 -16579022 - L1M4 LINE L1 -3321 2825 2686 376 287 93 20 chr15 84802243 84802393 -16578128 - MIR SINE MIR -2 260 100 1314 207 23 27 chr15 84802448 84802748 -16577773 - MLT1D LTR MaLR -206 299 1 22 35 0 0 chr15 84803006 84803035 -16577486 + AT_rich Low_complexity Low_complexity 1 29 0 2028 145 3 7 chr15 84803161 84803471 -16577050 - AluJb SINE Alu -1 311 3 27 29 0 0 chr15 84803480 84803514 -16577007 + AT_rich Low_complexity Low_complexity 1 34 0 3531 38 0 0 chr15 84803514 84803907 -16576614 - L1PA3 LINE L1 -3 6152 5760 321 71 0 0 chr15 84803907 84803949 -16576572 + L1PA3 LINE L1 5731 5772 -383 * 327 322 71 19 chr15 84803943 84804154 -16576367 - HAL1b LINE L1 -730 618 397 227 122 20 0 chr15 84804186 84804235 -16576286 + (CA)n Simple_repeat Simple_repeat 1 50 0 567 146 136 0 chr15 84804888 84804998 -16575523 + MLT1D LTR MaLR 3 127 -378 184 213 0 0 chr15 84805391 84805438 -16575083 + L3 LINE CR1 1113 1159 -418 402 306 48 80 chr15 84805703 84806017 -16574504 + L2 LINE L2 2946 3249 -64 669 249 80 24 chr15 84806066 84806279 -16574242 - MIR SINE MIR -34 228 4 2075 133 3 0 chr15 84806373 84806658 -16573863 - AluSx SINE Alu -26 286 1 2403 194 68 42 chr15 84807086 84807705 -16572816 + L1MC4 LINE L1 7271 7905 -137 2115 171 33 13 chr15 84807945 84808342 -16572179 - MER73 LTR ERVL -2 642 238 276 196 176 20 chr15 84808357 84808459 -16572062 - MER54A LTR ERVL -501 400 283 * 327 176 27 27 chr15 84808447 84808509 -16572012 - MER73 LTR ERVL -563 81 17 1642 164 68 3 chr15 84808509 84808802 -16571719 + AluJo SINE Alu 1 312 0 327 176 27 27 chr15 84808802 84808813 -16571708 - MER73 LTR ERVL -626 18 8 285 371 23 0 chr15 84808820 84808952 -16571569 + L3 LINE CR1 1361 1495 -82 2088 113 0 36 chr15 84810588 84810967 -16569554 - AluSx SINE Alu 0 368 1 644 283 32 16 chr15 84812186 84812373 -16568148 + MIR SINE MIR 64 253 -9 2669 93 30 33 chr15 84812452 84812817 -16567704 - THE1B LTR MaLR 0 364 1 281 233 104 153 chr15 84812862 84812911 -16567610 + MIR SINE MIR 59 109 -153 1155 200 163 46 chr15 84812911 84813236 -16567285 + MLT1A1 LTR MaLR 1 363 -2 281 233 104 153 chr15 84813236 84813388 -16567133 + MIR SINE MIR 109 250 -12 397 304 112 13 chr15 84814103 84814327 -16566194 + MER110 LTR ERV1 235 480 -11 570 319 37 23 chr15 84814433 84814649 -16565872 - MIR SINE MIR -13 249 31 564 183 0 40 chr15 84814692 84814818 -16565703 - L1MA7 LINE L1 0 6291 6171 827 127 8 8 chr15 84815757 84815883 -16564638 + FLAM_C SINE Alu 18 143 0 596 225 39 34 chr15 84815968 84816146 -16564375 + MER104 DNA MER2_type 2 180 0 758 272 69 85 chr15 84816330 84816838 -16563683 - L2 LINE L2 -1 3312 2813 4088 98 51 61 chr15 84817487 84818138 -16562383 + LTR9B LTR ERV1 1 644 0 243 351 43 0 chr15 84818633 84818727 -16561794 + MIR SINE MIR 34 131 -77 994 182 23 23 chr15 84818743 84818957 -16561564 - MER20 DNA MER1_type -5 214 1 197 255 20 59 chr15 84818962 84819064 -16561457 + MIR SINE MIR 144 241 -21 600 208 8 31 chr15 84819597 84819727 -16560794 + MER58B DNA MER1_type 204 330 -11 314 281 56 25 chr15 84819892 84820052 -16560469 - MIR SINE MIR -14 248 84 2331 112 0 0 chr15 84820128 84820431 -16560090 - AluSg SINE Alu -7 303 1 243 288 123 14 chr15 84821440 84821513 -16559008 - MIR SINE MIR -107 101 25 500 248 121 6 chr15 84821571 84821728 -16558793 + MIR SINE MIR 48 222 -40 204 280 20 80 chr15 84822815 84822915 -16557606 - L3b LINE CR1 -311 1272 1179 314 281 128 0 chr15 84822915 84823066 -16557455 + MIR SINE MIR 11 179 -62 269 200 33 17 chr15 84823685 84823745 -16556776 + MIR SINE MIR 93 153 -55 528 165 29 0 chr15 84823873 84823976 -16556545 + L1MA8 LINE L1 6181 6286 -5 2544 90 90 3 chr15 84825164 84825509 -16555012 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr15 84825538 84825559 -16554962 + AT_rich Low_complexity Low_complexity 1 21 0 284 354 31 16 chr15 84826665 84826792 -16553729 - MER117 DNA MER1_type 0 197 69 438 320 66 66 chr15 84827401 84827673 -16552848 - L2 LINE L2 -11 3261 2990 31 26 0 0 chr15 84828586 84828624 -16551897 + AT_rich Low_complexity Low_complexity 1 38 0 185 280 75 21 chr15 84830360 84830453 -16550068 - MIR SINE MIR -131 131 34 418 274 10 0 chr15 84831368 84831470 -16549051 + MER5A DNA MER1_type 9 111 -78 520 286 21 16 chr15 84832435 84832624 -16547897 - MER112 DNA MER1_type -6 254 65 2033 132 14 0 chr15 84833194 84833490 -16547031 - AluSq SINE Alu -1 312 13 449 86 0 0 chr15 84833971 84834041 -16546480 + Alu SINE Alu 238 307 -3 215 328 49 30 chr15 84834124 84834273 -16546248 - MIR SINE MIR -27 181 28 313 319 60 25 chr15 84834395 84834578 -16545943 + MIR SINE MIR 7 196 -63 521 68 81 0 chr15 84834633 84834707 -16545814 - MADE1 DNA Mariner 0 80 1 1980 240 43 74 chr15 84834952 84835561 -16544960 - MLT1E LTR MaLR -2 591 2 460 321 77 71 chr15 84835958 84836637 -16543884 + L2 LINE L2 2587 3263 -9 632 285 124 74 chr15 84836682 84837318 -16543203 - L2 LINE L2 0 3313 2620 2388 251 53 12 chr15 84837322 84837723 -16542798 + L1M4 LINE L1 3750 4196 -1950 285 29 0 0 chr15 84837723 84837757 -16542764 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 2388 251 53 12 chr15 84837757 84838085 -16542436 + L1M4 LINE L1 4196 4509 -1637 222 406 10 0 chr15 84838095 84838196 -16542325 + L2 LINE L2 2595 2696 -618 310 272 80 32 chr15 84838300 84838425 -16542096 - MIR SINE MIR -115 147 17 498 61 0 0 chr15 84838721 84838787 -16541734 + (CA)n Simple_repeat Simple_repeat 1 66 0 739 227 25 10 chr15 84839798 84839996 -16540525 - L1PB4 LINE L1 -2 6154 5954 521 350 0 0 chr15 84840956 84841136 -16539385 + (CA)n Simple_repeat Simple_repeat 1 180 0 231 61 0 0 chr15 84841255 84841288 -16539233 + (A)n Simple_repeat Simple_repeat 1 33 0 813 239 6 22 chr15 84842398 84842578 -16537943 + MER45A DNA AcHobo 2 178 0 258 300 150 0 chr15 84842769 84842889 -16537632 - MIR SINE MIR -117 145 8 522 162 0 19 chr15 84843286 84843440 -16537081 + (TA)n Simple_repeat Simple_repeat 1 151 0 297 349 24 35 chr15 84846261 84846430 -16534091 - MIR3 SINE MIR -5 203 37 477 0 0 0 chr15 84846681 84846734 -16533787 + (TG)n Simple_repeat Simple_repeat 1 53 0 2232 125 0 7 chr15 84847534 84847839 -16532682 + AluSx SINE Alu 1 303 -9 639 271 109 5 chr15 84848133 84848325 -16532196 + MIR SINE MIR 41 252 -10 332 239 142 91 chr15 84848880 84849056 -16531465 - MIR SINE MIR -76 186 2 379 337 187 15 chr15 84849243 84849638 -16530883 + L2 LINE L2 2851 3313 0 223 254 0 32 chr15 84850740 84850803 -16529718 + (CATA)n Simple_repeat Simple_repeat 2 62 0 37 39 0 0 chr15 84851008 84851059 -16529462 + AT_rich Low_complexity Low_complexity 1 51 0 7746 88 8 6 chr15 84851059 84852138 -16528383 - L1MA1 LINE L1 0 6302 5221 329 279 32 58 chr15 84852171 84852361 -16528160 - L1MC/D LINE L1 -2368 5440 5256 279 324 49 10 chr15 84852554 84852656 -16527865 - MIR SINE MIR -61 147 42 771 181 9 0 chr15 84852669 84852785 -16527736 + FLAM_A SINE Alu 10 126 -16 320 261 47 74 chr15 84853042 84853257 -16527264 - L1ME2 LINE L1 -183 5981 5773 1446 198 51 26 chr15 84853259 84853572 -16526949 + MLT1A2 LTR MaLR 25 345 -29 9548 177 24 25 chr15 84853582 84855784 -16524737 - L1 LINE L1 -1112 5994 1489 247 339 122 0 chr15 84855825 84855940 -16524581 - L1MEd LINE L1 -5537 582 454 395 307 55 60 chr15 84855976 84856341 -16524180 - L1MEd LINE L1 -5755 364 2 423 239 164 13 chr15 84859922 84860081 -16520440 + MIR SINE MIR 21 203 -59 429 234 120 44 chr15 84860373 84860476 -16520045 + MIR SINE MIR 86 207 -55 2199 106 3 13 chr15 84860476 84860777 -16519744 + AluSg SINE Alu 1 298 -12 429 234 120 44 chr15 84860777 84860831 -16519690 + MIR SINE MIR 207 255 -7 1105 200 10 0 chr15 84862699 84862899 -16517622 - MER58A DNA MER1_type 0 224 23 273 273 78 0 chr15 84863056 84863133 -16517388 - L2 LINE L2 -1 3312 3230 327 252 102 24 chr15 84863590 84863717 -16516804 - MER90 LTR ERV1 -16 559 423 225 0 0 0 chr15 84863738 84863763 -16516758 + (T)n Simple_repeat Simple_repeat 1 25 0 411 254 46 15 chr15 84864068 84864198 -16516323 - L1ME3A LINE L1 -338 5832 5699 2319 101 16 0 chr15 84864473 84864780 -16515741 - AluSx SINE Alu 0 312 1 1401 272 83 45 chr15 84864790 84865434 -16515087 - L1ME3A LINE L1 -1460 4686 4068 285 29 0 0 chr15 84865434 84865468 -16515053 + (TG)n Simple_repeat Simple_repeat 2 35 0 1401 272 83 45 chr15 84865468 84866097 -16514424 - L1ME3A LINE L1 -2078 4068 3380 1859 159 3 26 chr15 84866210 84866512 -16514009 + AluSq SINE Alu 1 295 -18 765 277 64 40 chr15 84866520 84867174 -16513347 - L1ME3A LINE L1 -3142 3004 2335 299 346 27 108 chr15 84868840 84869172 -16511349 - L2 LINE L2 -39 3233 2929 442 265 126 104 chr15 84869253 84869824 -16510697 - L2 LINE L2 -3 3310 2733 225 0 0 0 chr15 84871292 84871317 -16509204 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 210 71 0 0 chr15 84871638 84871666 -16508855 + (T)n Simple_repeat Simple_repeat 1 28 0 196 226 113 125 chr15 84872586 84872754 -16507767 + MIR SINE MIR 49 214 -48 21 71 0 0 chr15 84873045 84873087 -16507434 + AT_rich Low_complexity Low_complexity 1 42 0 12256 186 32 24 chr15 84873102 84875594 -16504927 + L1PA15-16 LINE L1 2 2472 -4377 2303 108 0 0 chr15 84875594 84875889 -16504632 + AluSg SINE Alu 9 303 -7 12256 186 32 24 chr15 84875889 84877007 -16503514 + L1PA15-16 LINE L1 2472 3579 -3270 2583 66 0 0 chr15 84877007 84877311 -16503210 + AluY SINE Alu 1 304 -7 12256 186 32 24 chr15 84877311 84879498 -16501023 + L1PA15-16 LINE L1 3579 5538 -1311 440 304 45 36 chr15 84879573 84879784 -16500737 + L1MEd LINE L1 893 1110 -5009 2305 81 0 10 chr15 84879784 84880080 -16500441 - AluSc SINE Alu -16 293 1 440 304 45 36 chr15 84880080 84880203 -16500318 + L1MEd LINE L1 1110 1230 -4889 277 295 76 19 chr15 84880438 84880543 -16499978 + MIR3 SINE MIR 6 116 -92 202 184 41 20 chr15 84881977 84882026 -16498495 + GA-rich Low_complexity Low_complexity 4 53 0 3600 69 8 10 chr15 84882029 84882510 -16498011 + L1PA10 LINE L1 5677 6156 -12 1179 289 119 23 chr15 84882563 84883352 -16497169 - L2 LINE L2 0 3313 2450 819 218 33 63 chr15 84883429 84883732 -16496789 - L1M4 LINE L1 -2010 4136 3843 2750 180 89 36 chr15 84883735 84884329 -16496192 - L1MDa LINE L1 -4619 1921 1263 2376 79 3 0 chr15 84884329 84884621 -16495900 + AluSc SINE Alu 1 293 -16 2750 180 89 36 chr15 84884621 84884909 -16495612 - L1MDa LINE L1 -5277 1263 992 889 248 70 36 chr15 84884966 84885353 -16495168 + MLT1C LTR MaLR 61 460 -7 2595 211 164 23 chr15 84885358 84886214 -16494307 - L1MDa LINE L1 -5547 993 18 26 50 0 0 chr15 84887108 84887148 -16493373 + AT_rich Low_complexity Low_complexity 1 40 0 243 300 57 14 chr15 84887153 84887223 -16493298 - L2 LINE L2 0 3272 3200 342 312 241 5 chr15 84887256 84887455 -16493066 + MIR SINE MIR 15 260 -2 539 271 164 43 chr15 84887733 84888106 -16492415 + LTR33 LTR ERVL 1 418 -103 468 254 34 8 chr15 84889030 84889148 -16491373 + MER91C DNA MER1_type 20 140 0 544 324 65 16 chr15 84889178 84889425 -16491096 + MIR SINE MIR 2 260 -2 399 253 11 0 chr15 84889646 84889737 -16490784 - L2 LINE L2 0 3313 3222 549 302 145 20 chr15 84890009 84890257 -16490264 - L2 LINE L2 -16 3256 2978 509 111 44 0 chr15 84890626 84890716 -16489805 - AluSp/q SINE Alu -14 299 206 1819 106 0 4 chr15 84890816 84891051 -16489470 - AluSg SINE Alu -76 234 1 2401 83 0 10 chr15 84891104 84891418 -16489103 - AluY SINE Alu 0 311 1 254 303 11 0 chr15 84892951 84893040 -16487481 + A-rich Low_complexity Low_complexity 1 90 0 361 226 12 0 chr15 84893167 84893251 -16487270 + MER20 DNA MER1_type 1 85 -134 2215 120 7 0 chr15 84893267 84893568 -16486953 + AluSg SINE Alu 1 303 -7 1157 242 65 31 chr15 84893609 84894055 -16486466 + MLT1C LTR MaLR 6 466 -1 427 274 0 0 chr15 84894055 84894157 -16486364 + MER20 DNA MER1_type 118 219 0 213 214 0 0 chr15 84894354 84894396 -16486125 + L2 LINE L2 3271 3312 -1 366 331 42 7 chr15 84894628 84894770 -16485751 + MIR SINE MIR 82 228 -34 284 258 137 32 chr15 84894923 84895047 -16485474 - MIR SINE MIR -17 245 109 1353 203 141 23 chr15 84895841 84896195 -16484326 - MSTD LTR MaLR 0 396 1 2000 149 0 29 chr15 84897240 84897555 -16482966 - AluSx SINE Alu -6 306 1 1735 228 154 32 chr15 84899435 84899993 -16480528 + MLT1E2 LTR MaLR 1 626 0 201 74 0 0 chr15 84901105 84901132 -16479389 + (TG)n Simple_repeat Simple_repeat 1 27 0 226 299 15 0 chr15 84901607 84901674 -16478847 - MIR SINE MIR -63 145 78 853 328 26 9 chr15 84901829 84902171 -16478350 + L3 LINE CR1 1180 1527 -50 10393 200 57 25 chr15 84902650 84907229 -16473292 - L1MA9 LINE L1 -10 7721 2988 1416 295 76 20 chr15 84907326 84908065 -16472456 - L1MA9 LINE L1 -5173 2313 1534 400 339 134 28 chr15 84908212 84908825 -16471696 + L2 LINE L2 1932 2609 -705 266 222 300 0 chr15 84909031 84909121 -16471400 - MIR SINE MIR 0 262 146 327 227 26 35 chr15 84909707 84909823 -16470698 - L1MC4 LINE L1 -1339 6983 1996 189 171 0 0 chr15 84909823 84909858 -16470663 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 677 244 89 22 chr15 84911096 84911321 -16469200 - MIR SINE MIR -21 241 2 203 292 108 67 chr15 84911538 84911658 -16468863 + MIR3 SINE MIR 58 182 -26 494 325 74 65 chr15 84911858 84912427 -16468094 - MLT1K LTR MaLR -3 585 12 21 0 0 0 chr15 84913191 84913212 -16467309 + AT_rich Low_complexity Low_complexity 1 21 0 334 261 81 36 chr15 84913301 84913746 -16466775 + L1MEd LINE L1 910 1414 -4896 225 0 0 0 chr15 84914569 84914594 -16465927 + (A)n Simple_repeat Simple_repeat 1 25 0 329 246 35 0 chr15 84914885 84914999 -16465522 - L1MC4a LINE L1 -1880 5928 5811 1522 203 20 74 chr15 84915003 84915274 -16465247 - L1ME1 LINE L1 -4 6162 5929 2238 119 0 0 chr15 84915274 84915577 -16464944 + AluSq SINE Alu 10 312 -1 1522 203 20 74 chr15 84915577 84915802 -16464719 - L1ME1 LINE L1 -237 5929 5693 4633 219 38 18 chr15 84915916 84918119 -16462402 + L1MA9 LINE L1 3999 6248 -64 2007 191 8 13 chr15 84918219 84918611 -16461910 - L1 LINE L1 -2158 3988 3599 1078 248 94 51 chr15 84918803 84919251 -16461270 + MLT1C LTR MaLR 1 467 0 2167 134 0 3 chr15 84919651 84919956 -16460565 + AluSx SINE Alu 5 308 -4 469 311 102 53 chr15 84920436 84920947 -16459574 - L1ME4a LINE L1 -56 6065 5530 11043 113 1 0 chr15 84921102 84922642 -16457879 + L1P LINE L1 3 1544 -4602 30386 116 21 58 chr15 84922889 84929280 -16451241 + L1PA7 LINE L1 1 6151 -3 280 331 32 45 chr15 84929409 84929563 -16450958 - MER5B DNA MER1_type 0 178 27 2005 134 3 7 chr15 84930502 84930800 -16449721 - AluSx SINE Alu -15 297 1 307 300 67 8 chr15 84931364 84931484 -16449037 - MER94 DNA DNA -5 129 3 233 395 82 10 chr15 84932336 84932531 -16447990 + L3b LINE CR1 1295 1503 -80 2204 92 20 0 chr15 84933965 84934257 -16446264 + AluY SINE Alu 1 298 -13 186 318 0 0 chr15 84934278 84934322 -16446199 - L2 LINE L2 -33 3239 3196 738 271 13 36 chr15 84934601 84934826 -16445695 - MIR SINE MIR -15 247 28 2307 187 37 9 chr15 84935934 84936394 -16444127 - L1MC3 LINE L1 -139 7646 7174 493 290 165 9 chr15 84939024 84939248 -16441273 + MIR SINE MIR 3 261 -1 331 356 8 23 chr15 84939900 84940032 -16440489 - L2 LINE L2 -3 3310 3181 2167 130 0 16 chr15 84941261 84941576 -16438945 - AluSg SINE Alu 0 310 1 849 137 25 86 chr15 84941856 84942028 -16438493 + MER53 DNA DNA 1 161 -28 2193 127 3 0 chr15 84942028 84942328 -16438193 - AluSx SINE Alu -11 301 1 849 137 25 86 chr15 84942328 84942352 -16438169 + MER53 DNA DNA 161 185 -4 371 272 44 25 chr15 84942488 84942646 -16437875 - Charlie8 DNA MER1_type -2187 230 70 216 162 0 0 chr15 84942905 84942942 -16437579 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr15 84943625 84943647 -16436874 + AT_rich Low_complexity Low_complexity 1 22 0 342 0 0 0 chr15 84943852 84943890 -16436631 + (TAA)n Simple_repeat Simple_repeat 2 39 0 279 340 161 6 chr15 84943913 84944075 -16436446 - MIR SINE MIR -32 230 44 250 283 98 52 chr15 84945666 84945839 -16434682 + MIR SINE MIR 5 185 -77 1931 118 40 3 chr15 84946696 84946993 -16433528 - L1MA5 LINE L1 -2 6298 5991 381 219 19 0 chr15 84947735 84947840 -16432681 + L1M4 LINE L1 2900 3006 -3140 2142 109 34 0 chr15 84947947 84948241 -16432280 - AluSx SINE Alu -8 304 1 183 267 233 11 chr15 84948425 84948515 -16432006 + L2 LINE L2 3147 3256 -16 605 285 130 39 chr15 84948569 84949008 -16431513 - L2 LINE L2 -1000 2314 1836 241 188 42 31 chr15 84949103 84949199 -16431322 + (TA)n Simple_repeat Simple_repeat 1 97 0 230 279 0 61 chr15 84950054 84950201 -16430320 + CT-rich Low_complexity Low_complexity 1 138 0 253 325 96 38 chr15 84951360 84951600 -16428921 + MIR SINE MIR 3 256 -6 289 336 9 18 chr15 84951733 84951843 -16428678 - MIR SINE MIR -80 128 20 623 316 8 24 chr15 84952388 84952635 -16427886 + MIR SINE MIR 3 245 -17 2031 142 72 28 chr15 84952811 84953170 -16427351 - THE1C LTR MaLR 0 375 1 197 364 15 0 chr15 84953239 84953305 -16427216 + L2 LINE L2 3182 3248 -24 1255 260 61 82 chr15 84953948 84954523 -16425998 - MER77 LTR ERV1 -11 594 54 24 0 0 0 chr15 84954876 84954900 -16425621 + AT_rich Low_complexity Low_complexity 1 24 0 462 254 81 49 chr15 84956247 84956432 -16424089 - MIR SINE MIR -16 246 56 406 243 45 27 chr15 84956432 84956543 -16423978 + MER81 DNA DNA 2 114 0 2100 147 0 3 chr15 84956545 84956859 -16423662 - AluSq SINE Alu 0 313 1 648 252 75 37 chr15 84957181 84957395 -16423126 - MIR SINE MIR -5 257 36 242 192 0 14 chr15 84957849 84957922 -16422599 + CT-rich Low_complexity Low_complexity 1 72 0 1197 112 0 0 chr15 84957922 84958083 -16422438 - AluSg/x SINE Alu -5 307 147 465 219 0 0 chr15 84958098 84958212 -16422309 + CT-rich Low_complexity Low_complexity 3 116 0 207 185 0 56 chr15 84958246 84958300 -16422221 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 216 0 0 0 chr15 84958582 84958606 -16421915 + (TG)n Simple_repeat Simple_repeat 2 25 0 208 362 65 16 chr15 84959256 84959441 -16421080 - L2 LINE L2 -165 3107 2914 270 291 25 0 chr15 84959510 84959589 -16420932 - L2 LINE L2 -491 2823 2743 25 0 0 0 chr15 84960304 84960329 -16420192 + AT_rich Low_complexity Low_complexity 1 25 0 279 0 0 0 chr15 84960894 84960925 -16419596 + (A)n Simple_repeat Simple_repeat 1 31 0 2058 146 3 0 chr15 84960956 84961264 -16419257 + AluSx SINE Alu 1 309 -3 1039 223 44 44 chr15 84962670 84962989 -16417532 + MER33 DNA MER1_type 1 319 -5 498 276 192 6 chr15 84962998 84963154 -16417367 + MER5A DNA MER1_type 4 188 -1 292 291 58 48 chr15 84963229 84963332 -16417189 + L2 LINE L2 3193 3296 -17 382 141 13 13 chr15 84963439 84963517 -16417004 + C-rich Low_complexity Low_complexity 5 82 0 1047 122 12 0 chr15 84963523 84963687 -16416834 - MER41B LTR ERV1 -85 550 385 185 257 186 0 chr15 84964037 84964107 -16416414 + L2 LINE L2 3171 3253 -19 203 88 29 0 chr15 84964117 84964151 -16416370 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 187 400 48 0 chr15 84965733 84965838 -16414683 - MIR SINE MIR -62 146 37 472 338 14 14 chr15 84966641 84966848 -16413673 + L1MEc LINE L1 1600 1806 -4590 1113 247 87 24 chr15 84966940 84967587 -16412934 + L1MEc LINE L1 2023 2666 -3549 234 0 0 0 chr15 84967940 84967966 -16412555 + (T)n Simple_repeat Simple_repeat 1 26 0 257 285 68 53 chr15 84968428 84968691 -16411830 - L1ME4a LINE L1 -159 5962 5696 317 294 154 35 chr15 84968736 84968879 -16411642 + L2 LINE L2 3112 3271 -1 1823 208 6 6 chr15 84970048 84970413 -16410108 + MLT1A1 LTR MaLR 1 365 0 304 267 13 13 chr15 84970463 84970538 -16409983 - MIR SINE MIR -187 75 1 486 329 21 67 chr15 84970840 84971321 -16409200 - MLT1J LTR MaLR -50 461 3 200 397 96 29 chr15 84971507 84971892 -16408629 + L2 LINE L2 2825 3235 -37 797 164 26 0 chr15 84972255 84972407 -16408114 - L1MA6 LINE L1 -360 5940 5785 222 240 0 0 chr15 84972408 84972458 -16408063 + (TA)n Simple_repeat Simple_repeat 1 50 0 313 289 48 10 chr15 84972458 84972562 -16407959 + L1MC4 LINE L1 6595 6702 -1340 428 339 50 2 chr15 84972980 84973187 -16407334 - MIR SINE MIR -21 241 25 350 164 110 0 chr15 84974050 84974123 -16406398 + AluJb SINE Alu 43 123 -179 390 327 80 17 chr15 84974148 84974327 -16406194 - MIR3 SINE MIR -5 203 13 232 336 100 36 chr15 84976368 84976588 -16403933 - L3 LINE CR1 -64 1513 1280 5327 157 31 11 chr15 84976761 84978484 -16402037 - L1PB2 LINE L1 -6 6145 4378 270 0 0 0 chr15 84978484 84978514 -16402007 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 5327 157 31 11 chr15 84978514 84978814 -16401707 - L1PB2 LINE L1 -1773 4378 4085 189 0 0 0 chr15 84979186 84979207 -16401314 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 396 326 55 11 chr15 84979947 84980128 -16400393 - MIR SINE MIR -15 247 59 349 345 42 0 chr15 84980183 84980325 -16400196 - MIR3 SINE MIR -7 201 54 2147 86 33 23 chr15 84981591 84981892 -16398629 + AluY SINE Alu 1 304 -7 239 275 87 7 chr15 84982215 84982353 -16398168 - LTR50 LTR ERVL -164 631 483 250 322 49 39 chr15 84983296 84983501 -16397020 - L1MC/D LINE L1 -2150 5658 5452 494 272 44 58 chr15 84983525 84983731 -16396790 - MIR SINE MIR -56 206 4 189 211 0 0 chr15 84984429 84984486 -16396035 + CT-rich Low_complexity Low_complexity 2 58 0 187 258 43 54 chr15 84985124 84985217 -16395304 + MIR SINE MIR 92 183 -79 22 0 0 0 chr15 84985393 84985415 -16395106 + AT_rich Low_complexity Low_complexity 1 22 0 261 247 49 12 chr15 84986809 84986890 -16393631 + MIR SINE MIR 69 152 -110 599 26 100 13 chr15 84987173 84987403 -16393118 + (TA)n Simple_repeat Simple_repeat 1 250 0 223 233 0 0 chr15 84989213 84989256 -16391265 + (CCA)n Simple_repeat Simple_repeat 1 43 0 449 295 37 37 chr15 84989271 84989461 -16391060 - MIR SINE MIR -3 259 70 264 335 68 56 chr15 84989550 84989711 -16390810 - MIR3 SINE MIR -1 207 45 2075 145 11 2 chr15 84989853 84990339 -16390182 - L1P5 LINE L1 -529 5627 5137 2690 151 0 2 chr15 84990339 84990776 -16389745 + L1PB4 LINE L1 5709 6144 -12 316 222 26 34 chr15 84991039 84991156 -16389365 + MER103 DNA DNA 47 162 -4 370 188 163 0 chr15 84991283 84991363 -16389158 + MIR SINE MIR 7 99 -163 596 279 49 79 chr15 84991368 84991827 -16388694 - LTR16A LTR ERVL 0 450 4 399 197 134 47 chr15 84991827 84991954 -16388567 + MIR SINE MIR 115 252 -10 461 295 116 36 chr15 84992052 84992276 -16388245 - L3 LINE CR1 -603 974 733 624 324 129 20 chr15 84993472 84993876 -16386645 - L3 LINE CR1 -1 1576 1129 309 312 151 56 chr15 84993883 84994220 -16386301 - L2 LINE L2 0 3272 2904 1066 314 130 30 chr15 84994263 84994888 -16385633 - L3 LINE CR1 -542 1035 349 24194 48 15 7 chr15 84995012 84998852 -16381669 + L1PA5 LINE L1 2301 6150 -4 443 218 0 9 chr15 84998854 84998964 -16381557 + L1MA9 LINE L1 6168 6276 -36 303 332 236 5 chr15 84999834 85000033 -16380488 - MIR SINE MIR -16 246 2 188 375 50 0 chr15 85000381 85000461 -16380060 - L3 LINE CR1 -14 1563 1480 4471 145 5 26 chr15 85001480 85002217 -16378304 - MER72 LTR ERV1 0 722 1 446 291 199 0 chr15 85003765 85003916 -16376605 + MER5A DNA MER1_type 9 189 0 1386 229 35 0 chr15 85004039 85004358 -16376163 - MER58B DNA MER1_type -10 331 2 462 352 20 24 chr15 85004583 85004830 -16375691 + MIR SINE MIR 2 247 -15 21 0 0 0 chr15 85005282 85005303 -16375218 + AT_rich Low_complexity Low_complexity 1 21 0 243 271 93 42 chr15 85007819 85007937 -16372584 + L2 LINE L2 3190 3313 0 834 234 81 10 chr15 85008192 85008401 -16372120 + MER58A DNA MER1_type 1 224 0 257 381 7 27 chr15 85009406 85009553 -16370968 + MIR SINE MIR 20 163 -99 2345 139 8 8 chr15 85010181 85010583 -16369938 - L1M1 LINE L1 -530 5773 5372 289 317 49 8 chr15 85013315 85013438 -16367083 - MER5A DNA MER1_type -26 163 36 447 269 138 20 chr15 85013702 85013955 -16366566 + MLT1K LTR MaLR 306 588 0 1880 163 0 0 chr15 85014208 85014508 -16366013 + AluJo SINE Alu 1 300 -12 260 389 58 37 chr15 85015065 85015548 -16364973 - L2 LINE L2 -787 2527 2035 190 167 48 24 chr15 85015578 85015620 -16364901 - MIR SINE MIR -24 238 196 539 269 124 26 chr15 85015790 85016024 -16364497 + MIR SINE MIR 1 257 -5 299 339 11 85 chr15 85016574 85016763 -16363758 + MER5B DNA MER1_type 1 175 -3 431 348 85 9 chr15 85016968 85017192 -16363329 + MIR SINE MIR 8 248 -14 23 0 0 0 chr15 85017195 85017218 -16363303 + AT_rich Low_complexity Low_complexity 1 23 0 796 279 68 79 chr15 85018999 85019553 -16360968 + L2 LINE L2 2742 3313 0 2061 233 90 11 chr15 85020621 85021244 -16359277 + L1ME1 LINE L1 5489 6160 -6 306 254 0 0 chr15 85021550 85021613 -16358908 + L2 LINE L2 3243 3305 -8 337 294 64 0 chr15 85021649 85021758 -16358763 - MIR SINE MIR -114 148 33 392 228 103 114 chr15 85021988 85022251 -16358270 - MIR SINE MIR 0 262 3 213 178 0 0 chr15 85022255 85022300 -16358221 + (TCCA)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr15 85024564 85024592 -16355929 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr15 85024604 85024647 -16355874 + AT_rich Low_complexity Low_complexity 1 43 0 280 308 60 0 chr15 85024976 85025093 -16355428 - MIR SINE MIR -67 195 72 1596 159 0 66 chr15 85026563 85026892 -16353629 + AluJo SINE Alu 16 324 0 184 299 10 93 chr15 85026897 85026994 -16353527 - MER5A DNA MER1_type -44 145 57 339 225 217 0 chr15 85027411 85027540 -16352981 - MER5B DNA MER1_type 0 178 22 11735 98 2 3 chr15 85028802 85031272 -16349249 - L1PA7 LINE L1 -18 6451 3987 11265 110 19 27 chr15 85031272 85031408 -16349113 - L1PA7 LINE L1 -4517 1944 1808 5495 144 23 37 chr15 85031408 85032494 -16348027 + MER11C LTR ERVK 1 1071 0 11265 110 19 27 chr15 85032494 85034286 -16346235 - L1PA7 LINE L1 -4653 1808 8 187 298 35 18 chr15 85034343 85034400 -16346121 + L2 LINE L2 3121 3178 -94 688 158 30 37 chr15 85035281 85035445 -16345076 - L1MA9 LINE L1 -9 6303 6141 608 185 0 0 chr15 85086277 85086531 -16293990 - ACRO1 Satellite acromeric 0 254 1 6356 21 0 1 chr15 85086633 85087842 -16292679 - L1PA2 LINE L1 -141 6014 4807 2416 234 50 18 chr15 85087984 85088660 -16291861 - L1M4 LINE L1 -5452 1090 393 23 33 0 0 chr15 85089083 85089113 -16291408 + AT_rich Low_complexity Low_complexity 1 30 0 430 240 32 48 chr15 85089537 85089662 -16290859 - L2 LINE L2 0 3313 3191 10120 95 3 3 chr15 85089762 85091180 -16289341 - THE1B-int LTR MaLR -163 1417 1 1858 147 49 38 chr15 85091187 85091534 -16288987 - THE1B LTR MaLR -13 351 1 1447 123 0 22 chr15 85091534 85091761 -16288760 + MER57A LTR ERV1 25 246 -157 605 301 42 22 chr15 85091863 85092139 -16288382 - L2 LINE L2 -317 2996 2398 363 94 0 18 chr15 85092194 85092406 -16288115 - AluSc SINE Alu -2 297 5 315 263 51 165 chr15 85093068 85093323 -16287198 - MIR SINE MIR -10 252 27 1090 148 22 43 chr15 85093819 85094049 -16286472 + THE1B LTR MaLR 140 364 0 244 33 0 0 chr15 85094049 85094078 -16286443 - MER57A LTR ERV1 -374 29 1 497 364 101 14 chr15 85094287 85094655 -16285866 + L3 LINE CR1 681 1080 -497 275 328 194 22 chr15 85094729 85095043 -16285478 - L2 LINE L2 -508 2806 2439 352 279 81 81 chr15 85095662 85095697 -16284824 - L1ME4a LINE L1 -212 5909 5875 1534 109 22 8 chr15 85095697 85095964 -16284557 - L1MA5 LINE L1 0 6300 6030 352 279 81 81 chr15 85095964 85096225 -16284296 - L1ME4a LINE L1 -245 5876 5613 1080 166 58 10 chr15 85097115 85097320 -16283201 - MER20 DNA MER1_type -4 215 1 202 311 54 0 chr15 85097348 85097422 -16283099 + MIR3 SINE MIR 105 182 -26 5119 38 2 11 chr15 85097522 85098155 -16282366 + L1PA4 LINE L1 5529 6155 0 27 29 0 0 chr15 85098157 85098191 -16282330 + AT_rich Low_complexity Low_complexity 1 34 0 5492 158 18 24 chr15 85098294 85100343 -16280178 - L1PA16 LINE L1 -10 6156 4125 1201 189 125 23 chr15 85100531 85100795 -16279726 - AluJo SINE Alu -8 294 4 237 220 0 0 chr15 85101292 85101342 -16279179 + CT-rich Low_complexity Low_complexity 1 50 0 480 216 97 43 chr15 85101467 85101652 -16278869 - MIR SINE MIR -1 261 67 1417 239 14 6 chr15 85101652 85101999 -16278522 - MER4D LTR ERV1 -10 893 544 655 224 18 0 chr15 85101995 85102167 -16278354 - MER4E LTR ERV1 -614 165 1 * 457 304 64 12 chr15 85102276 85102447 -16278074 - MIR SINE MIR -75 187 8 186 43 0 0 chr15 85104147 85104170 -16276351 + (TA)n Simple_repeat Simple_repeat 1 23 0 3225 131 14 10 chr15 85104291 85104796 -16275725 - MER84 LTR ERV1 0 507 1 224 122 24 0 chr15 85104846 85104887 -16275634 + CT-rich Low_complexity Low_complexity 1 42 0 406 229 50 29 chr15 85104920 85105060 -16275461 - L1MC4 LINE L1 -114 7928 7786 2855 142 73 19 chr15 85105086 85105353 -16275168 - LTR49 LTR ERV1 0 595 344 2516 110 13 8 chr15 85105353 85105726 -16274795 + THE1C LTR MaLR 1 375 0 2855 142 73 19 chr15 85105726 85106023 -16274498 - LTR49 LTR ERV1 -251 344 1 1517 210 84 53 chr15 85106043 85106331 -16274190 - L1MC4a LINE L1 -122 7686 7374 4248 191 53 11 chr15 85106331 85107158 -16273363 - MER21B LTR ERV1 -1 862 1 1517 210 84 53 chr15 85107158 85107378 -16273143 - L1MC4a LINE L1 -434 7374 7162 3888 144 44 9 chr15 85107378 85108065 -16272456 - MER50 LTR ERV1 -23 711 1 1272 249 76 19 chr15 85108093 85108668 -16271853 - L1MC4 LINE L1 -724 7164 6481 906 213 84 27 chr15 85108747 85109043 -16271478 - L1ME1 LINE L1 -15 6151 5839 858 261 25 20 chr15 85109046 85109057 -16271464 - L1M4 LINE L1 -2292 3854 3845 1600 176 55 21 chr15 85109057 85109346 -16271175 - AluJo SINE Alu -13 299 1 858 261 25 20 chr15 85109346 85109691 -16270830 - L1M4 LINE L1 -2301 3845 3496 1754 289 94 30 chr15 85109971 85110714 -16269807 + L2 LINE L2 1817 2607 -707 1044 198 77 79 chr15 85110772 85111151 -16269370 - LTR8A LTR ERV1 0 727 350 762 184 0 59 chr15 85111152 85111304 -16269217 + AluJo SINE Alu 1 143 -169 706 238 62 10 chr15 85112175 85112368 -16268153 - Charlie8 DNA MER1_type -2132 285 83 244 203 29 14 chr15 85113631 85113700 -16266821 + (TCTA)n Simple_repeat Simple_repeat 2 71 0 328 281 12 0 chr15 85113766 85113848 -16266673 - MER63 DNA MER1_type 0 1060 978 448 149 0 0 chr15 85113852 85113926 -16266595 - MER63 DNA MER1_type -313 749 676 1443 216 37 21 chr15 85114094 85114469 -16266052 - MER89 LTR ERV1 0 559 179 259 153 68 0 chr15 85114474 85114533 -16265988 - MER89 LTR ERV1 -494 65 3 2680 207 58 14 chr15 85114544 85115176 -16265345 - MER89-int LTR ERV1 -9 6792 6133 434 286 79 59 chr15 85115316 85115519 -16265002 + L3 LINE CR1 1363 1569 -8 569 311 53 18 chr15 85116368 85116593 -16263928 + L3 LINE CR1 885 1117 -460 308 143 0 57 chr15 85116818 85116888 -16263633 + MER34C LTR ERV1 36 101 -484 5495 108 24 29 chr15 85116897 85117769 -16262752 + MER4D LTR ERV1 5 872 0 425 311 131 23 chr15 85117963 85118268 -16262253 + L3 LINE CR1 1133 1470 -107 558 279 146 0 chr15 85118288 85118446 -16262075 + MER5A DNA MER1_type 9 189 0 492 303 60 5 chr15 85118749 85118934 -16261587 + L2 LINE L2 529 723 -2591 655 270 7 0 chr15 85119117 85119269 -16261252 + MER63A DNA MER1_type 53 205 -5 1732 180 3 16 chr15 85120627 85120944 -16259577 + AluSq SINE Alu 1 313 0 26 0 0 0 chr15 85122186 85122212 -16258309 + AT_rich Low_complexity Low_complexity 1 26 0 306 0 0 0 chr15 85122334 85122368 -16258153 + (CA)n Simple_repeat Simple_repeat 1 34 0 253 256 0 90 chr15 85123342 85123420 -16257101 - L2 LINE L2 0 3272 3202 199 306 101 91 chr15 85123919 85124128 -16256393 - L2 LINE L2 -113 3159 2949 212 203 72 43 chr15 85125493 85125562 -16254959 + MIR SINE MIR 11 81 -181 996 241 46 24 chr15 85125571 85125961 -16254560 - MLT1C LTR MaLR 0 390 10 274 305 255 0 chr15 85125962 85126103 -16254418 + MIR SINE MIR 80 256 -6 2135 123 0 7 chr15 85126287 85126587 -16253934 + AluSq SINE Alu 1 298 -15 365 307 207 35 chr15 85126629 85126917 -16253604 - L2 LINE L2 -5 3308 2959 2988 148 64 10 chr15 85126917 85127417 -16253104 - MER1A DNA MER1_type 0 527 1 365 307 207 35 chr15 85127417 85127447 -16253074 - L2 LINE L2 -354 2959 2935 1104 218 57 59 chr15 85128302 85128673 -16251848 + L1ME2 LINE L1 5772 6141 -23 2293 113 0 0 chr15 85129963 85130263 -16250258 - AluSc SINE Alu -9 300 1 206 300 105 67 chr15 85131339 85131549 -16248972 + MIR SINE MIR 32 249 -13 217 230 92 35 chr15 85132700 85132787 -16247734 - MIR3 SINE MIR -15 193 102 407 318 46 26 chr15 85133548 85133699 -16246822 + MIR SINE MIR 13 166 -96 224 233 0 0 chr15 85133820 85133863 -16246658 + L2 LINE L2 3226 3268 -4 1778 157 32 4 chr15 85133894 85134174 -16246347 + AluSq SINE Alu 5 292 -21 746 203 25 12 chr15 85134790 85134953 -16245568 + MER5A DNA MER1_type 2 166 -23 1358 154 0 21 chr15 85134962 85135196 -16245325 + AluJo SINE Alu 78 306 -6 438 322 56 30 chr15 85135286 85135685 -16244836 + ERVL LTR ERVL 742 1072 -4413 360 324 81 29 chr15 85135810 85135935 -16244586 + ERVL LTR ERVL 1338 1480 -4284 2435 84 0 6 chr15 85135935 85136246 -16244275 - AluSq SINE Alu -3 310 2 360 324 81 29 chr15 85136246 85136330 -16244191 + ERVL LTR ERVL 1480 1558 -4206 257 225 0 14 chr15 85136348 85136419 -16244102 - L1M4 LINE L1 -3750 2396 2327 194 214 126 117 chr15 85137085 85137188 -16243333 - L2 LINE L2 -7 3265 3162 370 315 8 0 chr15 85137836 85137963 -16242558 + MIR SINE MIR 20 147 -61 249 57 0 0 chr15 85138081 85138116 -16242405 + (T)n Simple_repeat Simple_repeat 1 35 0 4086 91 18 5 chr15 85138795 85139368 -16241153 + L1PA13 LINE L1 5565 6144 -19 1246 127 0 0 chr15 85139547 85139720 -16240801 - AluSg/x SINE Alu -6 304 132 2407 78 3 0 chr15 85139720 85140015 -16240506 - AluSp SINE Alu -17 296 1 276 308 77 0 chr15 85140592 85140683 -16239838 + L2 LINE L2 3215 3312 -1 669 249 32 37 chr15 85140821 85141010 -16239511 - MER5A DNA MER1_type 0 189 2 260 196 196 0 chr15 85141038 85141130 -16239391 + MIR SINE MIR 38 147 -61 2254 83 7 0 chr15 85141231 85141520 -16239001 + AluY SINE Alu 1 291 -20 1785 157 49 16 chr15 85141556 85141925 -16238596 - L1MA9 LINE L1 -4 6308 5928 239 211 33 37 chr15 85143205 85143326 -16237195 - MER5A DNA MER1_type -2 187 9 2361 116 33 43 chr15 85143569 85143967 -16236554 - MER48 LTR ERV1 -4 394 1 685 171 0 16 chr15 85144593 85144716 -16235805 + FLAM_C SINE Alu 1 121 -22 1273 145 17 62 chr15 85144738 85144979 -16235542 + AluJo SINE Alu 71 300 -12 767 208 13 13 chr15 85144984 85145143 -16235378 + FRAM SINE Alu 1 159 -7 446 329 25 8 chr15 85145638 85145843 -16234678 + L1M4c LINE L1 1292 1705 -1038 239 266 0 32 chr15 85146284 85146378 -16234143 + Charlie7 DNA MER1_type 6 96 -2516 232 339 64 18 chr15 85146633 85146742 -16233779 - L2 LINE L2 -1 3271 3158 500 294 175 43 chr15 85146869 85147552 -16232969 - L2 LINE L2 -69 3244 2472 1393 243 135 35 chr15 85148508 85149047 -16231474 - MLT1E LTR MaLR 0 593 1 553 155 10 10 chr15 85150089 85150192 -16230329 + AluJo SINE Alu 33 135 -177 323 225 38 0 chr15 85150273 85150353 -16230168 - L1ME3A LINE L1 -155 6015 5933 1926 101 7 57 chr15 85150530 85150865 -16229656 + AluSx SINE Alu 1 320 0 283 286 70 38 chr15 85150926 85151213 -16229308 + L1MC4 LINE L1 7747 8042 0 190 267 48 76 chr15 85151238 85151343 -16229178 - MIR SINE MIR -73 189 88 288 330 9 45 chr15 85151525 85151637 -16228884 - MIR3 SINE MIR -92 116 9 263 341 66 22 chr15 85152484 85152575 -16227946 + MIR SINE MIR 19 113 -95 21 71 0 0 chr15 85152962 85153004 -16227517 + AT_rich Low_complexity Low_complexity 1 42 0 2056 255 74 61 chr15 85153109 85153225 -16227296 - L2 LINE L2 -15 3298 3185 2274 120 0 0 chr15 85153225 85153524 -16226997 + AluSx SINE Alu 1 299 -13 2056 255 74 61 chr15 85153524 85154459 -16226062 - L2 LINE L2 -128 3185 2235 1428 269 39 8 chr15 85154631 85155240 -16225281 - L1MEc LINE L1 -3946 2450 1823 287 200 15 0 chr15 85155904 85155969 -16224552 - MLT1H LTR MaLR -5 544 479 432 253 79 57 chr15 85156087 85156232 -16224289 - MLT1H LTR MaLR -261 288 133 2395 129 20 0 chr15 85156232 85156589 -16223932 - THE1B LTR MaLR 0 364 1 432 253 79 57 chr15 85156589 85156708 -16223813 - MLT1H LTR MaLR -416 133 18 728 256 76 33 chr15 85156759 85157098 -16223423 + MLT1I LTR MaLR 47 370 -39 1359 113 0 26 chr15 85157197 85157426 -16223095 - L1PA13 LINE L1 -2 6161 5939 299 286 64 64 chr15 85157460 85157663 -16222858 + L2 LINE L2 1714 1916 -1398 326 322 58 62 chr15 85158187 85158429 -16222092 + MIR SINE MIR 20 260 -2 207 314 0 0 chr15 85159557 85159608 -16220913 + MIR3 SINE MIR 106 156 -52 259 216 59 0 chr15 85159896 85159947 -16220574 - MIR SINE MIR -58 150 97 293 302 48 26 chr15 85160184 85160373 -16220148 + L1M4b LINE L1 11 203 -6656 423 56 0 0 chr15 85160449 85160503 -16220018 + (CA)n Simple_repeat Simple_repeat 1 54 0 2477 147 52 5 chr15 85160580 85160988 -16219533 - MSTA LTR MaLR 0 428 2 330 355 45 25 chr15 85161038 85161238 -16219283 + L1M4b LINE L1 1029 1232 -5623 572 251 53 21 chr15 85161344 85161587 -16218934 + L1M4b LINE L1 1328 1578 -5281 407 152 36 18 chr15 85161620 85161732 -16218789 + GA-rich Low_complexity Low_complexity 2 115 0 629 250 30 38 chr15 85161738 85162002 -16218519 + L1M4b LINE L1 1638 1899 -4956 2677 311 67 18 chr15 85162023 85163591 -16216930 + L1M4b LINE L1 2919 4530 -2427 2948 163 24 11 chr15 85163591 85164126 -16216395 + L1MC1 LINE L1 5788 6329 -4 400 288 37 53 chr15 85164352 85164595 -16215926 - L2 LINE L2 0 3313 3075 200 322 0 0 chr15 85164572 85164631 -16215890 - L2 LINE L2 -653 2661 2603 * 470 121 0 0 chr15 85164733 85164799 -16215722 - AluS SINE Alu -246 66 1 283 269 62 75 chr15 85166331 85166491 -16214030 + MIR SINE MIR 58 215 -47 343 357 80 5 chr15 85167877 85168076 -16212445 + L3 LINE CR1 1050 1263 -314 225 200 0 0 chr15 85169284 85169329 -16211192 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 301 310 51 7 chr15 85169586 85169724 -16210797 - MIR SINE MIR -62 146 16 222 236 0 0 chr15 85169816 85169871 -16210650 + CT-rich Low_complexity Low_complexity 1 55 0 278 241 28 83 chr15 85170040 85170148 -16210373 + MIR SINE MIR 158 259 -3 222 62 0 0 chr15 85171603 85171635 -16208886 + (TTG)n Simple_repeat Simple_repeat 2 33 0 435 336 24 43 chr15 85172036 85172287 -16208234 - MIR SINE MIR -5 257 6 29 0 0 0 chr15 85172484 85172513 -16208008 + AT_rich Low_complexity Low_complexity 1 29 0 2541 80 3 0 chr15 85172557 85172869 -16207652 - AluSp SINE Alu 0 313 1 299 113 19 0 chr15 85173521 85173574 -16206947 + (TG)n Simple_repeat Simple_repeat 1 54 0 2179 134 0 0 chr15 85173620 85173927 -16206594 + AluSq SINE Alu 1 307 -6 198 71 0 0 chr15 85174442 85174470 -16206051 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 262 421 87 0 chr15 85175078 85175261 -16205260 + L2 LINE L2 3072 3270 -2 2789 193 224 35 chr15 85176125 85177016 -16203505 + MER52A LTR ERV1 46 1105 -650 825 301 33 21 chr15 85178524 85178860 -16201661 + LTR16A LTR ERVL 111 450 0 1646 199 44 41 chr15 85179110 85179522 -16200999 - MLT1C LTR MaLR 0 467 55 669 223 64 92 chr15 85179826 85180077 -16200444 - MIR SINE MIR 0 262 19 356 339 18 48 chr15 85180092 85180260 -16200261 + MIR3 SINE MIR 1 163 -45 39253 62 7 4 chr15 85180400 85186524 -16193997 - L1PA5 LINE L1 -3 6151 11 228 146 0 0 chr15 85187007 85187048 -16193473 - L1MCa LINE L1 -4379 2047 2007 397 342 101 4 chr15 85187086 85187314 -16193207 + MIR SINE MIR 3 252 -10 201 260 182 26 chr15 85187431 85187508 -16193013 + MER5B DNA MER1_type 88 176 -2 294 264 58 115 chr15 85187982 85188156 -16192365 - MER5A DNA MER1_type -8 181 18 441 163 265 48 chr15 85188880 85189027 -16191494 + MER5A DNA MER1_type 8 186 -3 1223 209 139 0 chr15 85189407 85189680 -16190841 + AluSx SINE Alu 2 312 0 2058 251 47 30 chr15 85190199 85191226 -16189295 - L1M4c LINE L1 -4425 2713 1530 324 208 142 83 chr15 85192376 85192496 -16188025 + L2 LINE L2 3187 3313 0 738 239 37 11 chr15 85192926 85193114 -16187407 + MIR SINE MIR 69 261 -1 25 0 0 0 chr15 85193770 85193795 -16186726 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr15 85194253 85194283 -16186238 + AT_rich Low_complexity Low_complexity 1 30 0 5814 223 68 51 chr15 85194322 85195478 -16185043 - L1MC4a LINE L1 -2 7806 6600 333 47 0 0 chr15 85195478 85195521 -16185000 + (CA)n Simple_repeat Simple_repeat 2 44 0 5814 223 68 51 chr15 85195521 85196397 -16184124 - L1MC4a LINE L1 -1208 6600 5740 497 304 63 7 chr15 85196399 85196669 -16183852 - L1 LINE L1 -1828 4318 4034 26 0 0 0 chr15 85196834 85196860 -16183661 + AT_rich Low_complexity Low_complexity 1 26 0 3467 102 29 60 chr15 85197131 85197748 -16182773 - MER4A LTR ERV1 0 600 3 2208 98 27 3 chr15 85197871 85198168 -16182353 + AluSq SINE Alu 1 304 -9 258 310 11 0 chr15 85198694 85198781 -16181740 - MER5A DNA MER1_type -98 91 4 2586 196 31 7 chr15 85200138 85200693 -16179828 + L1MB7 LINE L1 5609 6176 -8 959 123 6 0 chr15 85201196 85201359 -16179162 + (TCC)n Simple_repeat Simple_repeat 2 165 0 496 189 39 0 chr15 85201594 85201721 -16178800 - MER69 DNA AcHobo -5 2521 2390 944 278 49 39 chr15 85201778 85202185 -16178336 - MER69 DNA AcHobo -1997 529 119 417 298 74 27 chr15 85202819 85203333 -16177188 - L1ME4a LINE L1 -257 5864 5327 308 275 47 89 chr15 85203615 85203851 -16176670 - L1ME3A LINE L1 -23 6147 5922 261 180 33 0 chr15 85203881 85203942 -16176579 - L1ME3A LINE L1 -219 5951 5889 707 150 0 55 chr15 85203945 85204072 -16176449 + FLAM_C SINE Alu 17 136 -7 247 250 37 56 chr15 85204109 85204217 -16176304 - MLT1H LTR MaLR -16 533 428 28 48 0 0 chr15 85204887 85204929 -16175592 + AT_rich Low_complexity Low_complexity 1 42 0 316 327 35 0 chr15 85204939 85205052 -16175469 - L1ME4a LINE L1 -2313 3833 3717 23 0 0 0 chr15 85205151 85205174 -16175347 + AT_rich Low_complexity Low_complexity 1 23 0 229 295 54 60 chr15 85205250 85205416 -16175105 - MLT1L LTR MaLR -102 513 349 399 198 0 144 chr15 85206703 85206814 -16173707 + MER2 DNA MER2_type 4 98 -247 219 276 125 79 chr15 85207926 85208078 -16172443 - MIR SINE MIR -71 191 33 274 311 74 113 chr15 85208953 85209262 -16171259 - L2 LINE L2 0 3272 2976 471 168 32 11 chr15 85209309 85209404 -16171117 - MLT1C LTR MaLR 0 467 371 1599 226 53 20 chr15 85210689 85211141 -16169380 - MLT1C LTR MaLR 0 467 1 2735 228 34 3 chr15 85211871 85212455 -16168066 - MER77 LTR ERV1 0 605 4 5054 185 26 6 chr15 85212497 85214083 -16166438 + L1P5 LINE L1 4123 5744 -410 242 100 25 0 chr15 85214183 85214223 -16166298 + L1P5 LINE L1 5749 5789 -365 * 245 246 0 0 chr15 85214213 85214282 -16166239 + L1MC4 LINE L1 6635 6703 -1339 274 103 0 35 chr15 85214292 85214350 -16166171 + (TA)n Simple_repeat Simple_repeat 1 56 0 1974 115 79 3 chr15 85214362 85214702 -16165819 + L1PB3 LINE L1 5782 6147 -7 380 200 11 0 chr15 85215599 85215694 -16164827 + (TCCA)n Simple_repeat Simple_repeat 1 96 0 32307 39 31 2 chr15 85215803 85220009 -16160512 + L1P LINE L1 1 4330 -1816 396 252 161 50 chr15 85220538 85220756 -16159765 - MIR SINE MIR -14 248 7 61 37 0 0 chr15 85222999 85223081 -16157440 + AT_rich Low_complexity Low_complexity 1 82 0 303 284 44 59 chr15 85223463 85223667 -16156854 - L1ME LINE L1 -418 5703 5503 25 0 0 0 chr15 85224012 85224037 -16156484 + AT_rich Low_complexity Low_complexity 1 25 0 481 273 64 27 chr15 85224507 85224837 -16155684 - L1ME LINE L1 -1714 4432 4091 568 317 25 67 chr15 85224958 85225198 -16155323 - MIR SINE MIR -32 230 1 29 60 0 0 chr15 85225399 85225449 -16155072 + AT_rich Low_complexity Low_complexity 1 50 0 474 70 0 0 chr15 85225453 85225524 -16154997 + (TATG)n Simple_repeat Simple_repeat 2 72 0 22 0 0 0 chr15 85225603 85225625 -16154896 + AT_rich Low_complexity Low_complexity 1 22 0 2507 131 55 0 chr15 85226093 85226497 -16154024 - MSTB LTR MaLR 0 426 1 445 339 51 44 chr15 85226964 85227515 -16153006 + L1MEd LINE L1 279 833 -5286 526 249 41 57 chr15 85227555 85227800 -16152721 + L1MEd LINE L1 971 1211 -4908 341 304 20 47 chr15 85228173 85228472 -16152049 - L1ME4a LINE L1 -223 5898 5608 2188 100 0 0 chr15 85228578 85228857 -16151664 + AluSq SINE Alu 1 279 -34 255 31 0 0 chr15 85228857 85228889 -16151632 + (CA)n Simple_repeat Simple_repeat 2 33 0 189 0 0 0 chr15 85229524 85229545 -16150976 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 189 308 77 69 chr15 85230082 85230212 -16150309 - L2 LINE L2 0 3272 3142 646 141 0 0 chr15 85230245 85230344 -16150177 + FRAM SINE Alu 64 162 -14 348 322 56 14 chr15 85231514 85231657 -16148864 - MIR SINE MIR -94 168 20 679 301 10 7 chr15 85231713 85231932 -16148589 + MIR SINE MIR 38 257 -5 664 92 0 8 chr15 85234576 85234794 -16145727 + AluSg SINE Alu 1 301 -8 1010 198 35 0 chr15 85235755 85235987 -16144534 - L1MA8 LINE L1 -5 6286 6047 25 51 0 0 chr15 85236244 85236283 -16144238 + AT_rich Low_complexity Low_complexity 1 39 0 247 242 127 46 chr15 85236670 85236930 -16143591 - L1M4 LINE L1 -1310 4836 4556 327 318 103 75 chr15 85236956 85237570 -16142951 - L1M4 LINE L1 -1624 4522 3892 2170 126 7 3 chr15 85238256 85238624 -16141897 - AluSx SINE Alu 0 369 1 649 321 15 34 chr15 85240347 85240612 -16139909 - MIR SINE MIR 0 262 3 193 297 66 22 chr15 85241023 85241114 -16139407 - MIR SINE MIR -80 182 88 183 129 0 0 chr15 85241654 85241685 -16138836 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 691 161 29 29 chr15 85242041 85242178 -16138343 - FLAM_C SINE Alu -1 142 6 2024 284 37 10 chr15 85242332 85242933 -16137588 - L2 LINE L2 -1566 1748 1132 711 249 13 42 chr15 85243495 85243712 -16136809 + MLT1J LTR MaLR 1 173 -277 234 262 199 42 chr15 85243693 85243884 -16136637 + MLT1J LTR MaLR 289 509 -2 * 383 316 81 35 chr15 85244466 85244640 -16135881 - MER5A DNA MER1_type -1 188 7 205 292 21 0 chr15 85244861 85244909 -16135612 + MIR SINE MIR 57 105 -157 795 227 22 65 chr15 85246159 85246388 -16134133 + MER20 DNA MER1_type 1 219 0 428 207 90 146 chr15 85247480 85247803 -16132718 - MER102b DNA MER1_type -3 338 34 229 211 0 19 chr15 85248843 85248895 -16131626 + CT-rich Low_complexity Low_complexity 5 55 0 401 226 49 10 chr15 85249296 85249398 -16131123 + MIR SINE MIR 91 196 -66 372 191 18 9 chr15 85251364 85251474 -16129047 + (TA)n Simple_repeat Simple_repeat 1 111 0 196 246 175 53 chr15 85251629 85251743 -16128778 + L2 LINE L2 3186 3313 0 25 0 0 0 chr15 85254060 85254085 -16126436 + AT_rich Low_complexity Low_complexity 1 25 0 189 121 0 0 chr15 85254775 85254808 -16125713 + (TTA)n Simple_repeat Simple_repeat 2 34 0 659 232 25 141 chr15 85255534 85255575 -16124946 - MIR SINE MIR 0 262 218 2224 102 20 3 chr15 85255575 85255869 -16124652 - AluSg SINE Alu -11 299 1 659 232 25 141 chr15 85255869 85256111 -16124410 - MIR SINE MIR -44 218 12 22 0 0 0 chr15 85256888 85256910 -16123611 + AT_rich Low_complexity Low_complexity 1 22 0 203 213 0 16 chr15 85257387 85257448 -16123073 + GA-rich Low_complexity Low_complexity 2 61 0 361 185 37 117 chr15 85257826 85257843 -16122678 - L1MA10 LINE L1 -9 6325 6309 714 266 41 55 chr15 85257843 85258190 -16122331 - L1ME1 LINE L1 -13 6153 5810 818 296 132 24 chr15 85258249 85258627 -16121894 + L2 LINE L2 2895 3313 0 594 332 133 32 chr15 85258620 85259216 -16121305 + L3 LINE CR1 441 1096 -481 * 22 0 0 0 chr15 85261061 85261083 -16119438 + AT_rich Low_complexity Low_complexity 1 22 0 831 103 0 0 chr15 85261220 85261337 -16119184 + AluY SINE Alu 192 308 -3 901 264 96 30 chr15 85261379 85261713 -16118808 - LTR33 LTR ERVL -3 518 163 14861 183 31 11 chr15 85261744 85267053 -16113468 - L1PB1 LINE L1 0 6867 1392 1143 181 5 9 chr15 85267030 85267245 -16113276 - L1PB1 LINE L1 -6647 216 3 * 463 337 43 5 chr15 85267249 85267433 -16113088 - LTR33 LTR ERVL -330 191 1 243 355 55 0 chr15 85267433 85267543 -16112978 - MIR SINE MIR -57 205 90 3006 218 68 40 chr15 85268256 85269225 -16111296 - L1MC4 LINE L1 -1 8041 7046 519 222 6 17 chr15 85270396 85270572 -16109949 + C-rich Low_complexity Low_complexity 2 175 0 255 235 47 24 chr15 85270572 85270657 -16109864 + CT-rich Low_complexity Low_complexity 2 88 0 420 258 22 12 chr15 85270767 85271014 -16109507 + CT-rich Low_complexity Low_complexity 1 249 0 216 158 0 0 chr15 85271034 85271072 -16109449 + CT-rich Low_complexity Low_complexity 4 41 0 417 289 16 23 chr15 85271343 85271471 -16109050 + L2 LINE L2 3187 3313 0 660 280 25 47 chr15 85271921 85272157 -16108364 - L2 LINE L2 -1133 2181 1951 701 318 29 8 chr15 85272319 85272564 -16107957 + MIR SINE MIR 3 252 -10 1578 146 57 23 chr15 85272568 85272869 -16107652 + THE1B LTR MaLR 1 311 -53 5783 87 18 0 chr15 85272869 85274368 -16106153 + L1PA8 LINE L1 4704 6210 0 426 145 0 0 chr15 85274370 85274439 -16106082 + THE1B LTR MaLR 307 375 0 270 284 126 24 chr15 85274455 85274582 -16105939 + MIR SINE MIR 123 262 0 813 229 15 26 chr15 85276206 85276442 -16104079 + MLT1D LTR MaLR 252 503 -2 316 78 26 39 chr15 85276568 85276645 -16103876 + (TA)n Simple_repeat Simple_repeat 1 76 0 1047 328 56 7 chr15 85276660 85277215 -16103306 + ERVL LTR ERVL 2757 3338 -2426 40 0 0 0 chr15 85277416 85277456 -16103065 + AT_rich Low_complexity Low_complexity 1 40 0 281 335 82 0 chr15 85277478 85277636 -16102885 - MER20B DNA MER1_type -22 197 26 613 244 65 65 chr15 85277772 85278018 -16102503 - L1ME3 LINE L1 0 6170 5925 355 348 82 18 chr15 85278250 85278532 -16101989 + ERVL LTR ERVL 4228 4527 -1237 2566 118 0 6 chr15 85278540 85278906 -16101615 - THE1B LTR MaLR 0 364 1 10270 107 14 30 chr15 85278911 85280511 -16100010 - THE1B-int LTR MaLR -5 1575 1 1877 106 42 7 chr15 85280511 85280795 -16099726 - THE1B LTR MaLR 0 364 71 7220 48 0 1 chr15 85280903 85281942 -16098579 + L1PA5 LINE L1 5118 6153 -1 24 32 0 0 chr15 85282019 85282050 -16098471 + AT_rich Low_complexity Low_complexity 1 31 0 778 347 52 30 chr15 85282759 85283122 -16097399 - L2 LINE L2 -5 3267 2897 251 300 200 27 chr15 85283694 85283804 -16096717 + MIR3 SINE MIR 45 173 -35 330 303 126 55 chr15 85283982 85284220 -16096301 + MIR SINE MIR 5 259 -3 21 0 0 0 chr15 85285386 85285407 -16095114 + AT_rich Low_complexity Low_complexity 1 21 0 359 331 21 14 chr15 85285675 85285820 -16094701 + MER5A DNA MER1_type 1 146 -43 28 48 0 0 chr15 85286240 85286282 -16094239 + AT_rich Low_complexity Low_complexity 1 42 0 329 324 125 0 chr15 85287505 85287641 -16092880 - MIR SINE MIR -6 256 104 189 147 0 0 chr15 85288102 85288136 -16092385 + (T)n Simple_repeat Simple_repeat 1 34 0 262 149 0 21 chr15 85289891 85289938 -16090583 - MIR SINE MIR -123 85 40 2432 100 3 0 chr15 85290048 85290358 -16090163 - AluSp SINE Alu -2 311 1 1852 149 3 30 chr15 85290368 85290663 -16089858 - AluJb SINE Alu -25 287 1 350 221 62 26 chr15 85290730 85290843 -16089678 - MER103 DNA DNA -48 118 2 1983 192 10 74 chr15 85290960 85291681 -16088840 - L1M4 LINE L1 -1824 4322 3709 207 344 28 72 chr15 85291988 85292168 -16088353 + MIR SINE MIR 47 218 -44 196 273 84 133 chr15 85292208 85292530 -16087991 + L2 LINE L2 2951 3256 -16 516 304 37 21 chr15 85292959 85293150 -16087371 + MIR SINE MIR 54 247 -15 2207 110 3 0 chr15 85293150 85293442 -16087079 - AluSg SINE Alu -17 293 1 274 270 72 53 chr15 85293450 85293602 -16086919 + L2 LINE L2 3159 3313 0 185 143 0 0 chr15 85293707 85293735 -16086786 - L2 LINE L2 -20 3252 3225 21 0 0 0 chr15 85293866 85293887 -16086634 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr15 85293907 85293940 -16086581 + (CA)n Simple_repeat Simple_repeat 2 34 0 198 0 0 0 chr15 85294022 85294044 -16086477 + (TAGA)n Simple_repeat Simple_repeat 4 25 0 1961 137 7 3 chr15 85294162 85294447 -16086074 + AluSq SINE Alu 1 286 -27 24 0 0 0 chr15 85294447 85294471 -16086050 + AT_rich Low_complexity Low_complexity 1 24 0 322 332 50 41 chr15 85295275 85295495 -16085026 + MIR SINE MIR 30 251 -11 395 296 148 6 chr15 85295751 85295920 -16084601 + MIR SINE MIR 66 258 -4 1225 192 45 75 chr15 85296030 85296472 -16084049 + MLT2B1 LTR ERVL 1 475 -40 254 206 15 15 chr15 85296500 85296636 -16083885 + (TA)n Simple_repeat Simple_repeat 2 137 0 337 82 0 0 chr15 85296659 85296708 -16083813 + MLT2B1 LTR ERVL 464 512 -8 509 262 42 54 chr15 85296712 85296880 -16083641 - MIR SINE MIR -71 191 26 299 266 80 9 chr15 85296996 85297109 -16083412 - LTR67 LTR ERVL -3 554 434 594 294 0 0 chr15 85297367 85297513 -16083008 + MIR SINE MIR 31 176 -86 2180 118 0 10 chr15 85298412 85298730 -16081791 + AluSx SINE Alu 1 315 0 4839 132 21 4 chr15 85299171 85299981 -16080540 + L1PA16 LINE L1 5341 6164 -2 342 282 55 18 chr15 85300241 85300351 -16080170 - L2 LINE L2 0 3313 3200 640 180 75 25 chr15 85300558 85300719 -16079802 + MER96B DNA MER1_type? 67 235 -182 220 401 21 7 chr15 85300957 85301099 -16079422 + MIR SINE MIR 1 144 -118 396 290 28 0 chr15 85301397 85301504 -16079017 + MIR3 SINE MIR 99 208 0 21 0 0 0 chr15 85301827 85301848 -16078673 + AT_rich Low_complexity Low_complexity 1 21 0 1689 161 29 7 chr15 85302402 85302681 -16077840 + AluJo SINE Alu 1 285 -27 333 332 117 15 chr15 85302718 85302923 -16077598 - MIR SINE MIR -35 227 2 13372 64 2 15 chr15 85303150 85305378 -16075143 - L1P2 LINE L1 -404 5750 3552 21 0 0 0 chr15 85305512 85305533 -16074988 + AT_rich Low_complexity Low_complexity 1 21 0 629 104 0 0 chr15 85305547 85305643 -16074878 - L1MA5 LINE L1 -10 6290 6195 4519 117 31 4 chr15 85305903 85306604 -16073917 - L1PA13 LINE L1 0 6163 5444 1290 155 4 0 chr15 85306604 85306849 -16073672 + L1P LINE L1 4949 5194 -952 2327 125 0 0 chr15 85308653 85308964 -16071557 - AluSx SINE Alu -1 311 1 198 289 0 0 chr15 85311646 85311698 -16068823 - L2 LINE L2 -50 3263 3212 413 277 18 9 chr15 85312743 85312855 -16067666 - MIR SINE MIR -71 191 79 506 361 85 43 chr15 85313348 85313860 -16066661 + L2 LINE L2 2742 3272 0 1025 191 0 6 chr15 85313957 85314130 -16066391 + AluJb SINE Alu 3 174 -138 296 328 26 0 chr15 85314233 85314349 -16066172 + MIR SINE MIR 134 252 -10 212 200 40 20 chr15 85316068 85316118 -16064403 - MIR SINE MIR -1 261 211 406 273 110 0 chr15 85316244 85316398 -16064123 - MER69A DNA AcHobo -4 173 3 1946 143 0 11 chr15 85316480 85316852 -16063669 - L1P LINE L1 -795 5351 4984 2875 70 18 0 chr15 85316852 85317233 -16063288 + L1PA10 LINE L1 5775 6165 -3 314 269 83 46 chr15 85317764 85317872 -16062649 - L2 LINE L2 -1 3271 3160 230 384 67 6 chr15 85317893 85318057 -16062464 - L2 LINE L2 -606 2708 2535 25 51 0 0 chr15 85318503 85318542 -16061979 + AT_rich Low_complexity Low_complexity 1 39 0 503 256 60 70 chr15 85319039 85319399 -16061122 - L1MC/D LINE L1 -743 5403 5175 360 0 0 0 chr15 85319515 85319555 -16060966 + (TG)n Simple_repeat Simple_repeat 1 40 0 393 251 44 66 chr15 85319677 85319904 -16060617 - L1MC/D LINE L1 -1014 5132 4911 27 49 0 0 chr15 85320080 85320121 -16060400 + AT_rich Low_complexity Low_complexity 1 41 0 434 307 64 52 chr15 85320180 85320432 -16060089 - L1MC/D LINE L1 -1430 4716 4462 7265 103 4 23 chr15 85320717 85321809 -16058712 - MER11C LTR ERVK 0 1071 1 1030 197 5 0 chr15 85321967 85322165 -16058356 + MLT1A1 LTR MaLR 167 365 0 1425 259 97 41 chr15 85322165 85322685 -16057836 - L1ME LINE L1 -368 5802 5312 198 0 0 0 chr15 85322685 85322707 -16057814 + (CA)n Simple_repeat Simple_repeat 2 23 0 1425 259 97 41 chr15 85322707 85323419 -16057102 - L1ME LINE L1 -858 5312 4641 2214 109 0 19 chr15 85323419 85323730 -16056791 - AluSx SINE Alu -5 307 3 1425 259 97 41 chr15 85323730 85323772 -16056749 - L1ME LINE L1 -1529 4641 4603 30 0 0 0 chr15 85323772 85323802 -16056719 + AT_rich Low_complexity Low_complexity 1 30 0 1425 259 97 41 chr15 85323802 85323840 -16056681 - L1ME LINE L1 -1567 4603 4381 22 0 0 0 chr15 85324987 85325009 -16055512 + AT_rich Low_complexity Low_complexity 1 22 0 2222 119 0 3 chr15 85326393 85326695 -16053826 - AluSx SINE Alu -11 301 1 690 297 67 11 chr15 85326743 85326987 -16053534 + MIR SINE MIR 9 260 -2 312 336 50 14 chr15 85327186 85327326 -16053195 - MER5A DNA MER1_type 0 189 45 245 70 105 0 chr15 85327644 85327701 -16052820 + L1MD3 LINE L1 7933 7995 0 209 244 0 0 chr15 85328078 85328119 -16052402 - MER5A DNA MER1_type -82 107 67 2254 112 23 0 chr15 85328127 85328432 -16052089 - AluSx SINE Alu 0 312 1 1502 64 0 0 chr15 85328873 85329061 -16051460 - L1PA3 LINE L1 -3 6152 5965 23 0 0 0 chr15 85329201 85329224 -16051297 + AT_rich Low_complexity Low_complexity 1 23 0 363 240 45 7 chr15 85329664 85329810 -16050711 - L1ME LINE L1 -493 5628 5473 2255 170 84 71 chr15 85329890 85330554 -16049967 - L1MA9 LINE L1 -39 6273 5601 211 382 36 9 chr15 85331054 85331164 -16049357 - L2 LINE L2 -5 3267 3155 367 245 110 149 chr15 85331258 85331666 -16048855 - L2 LINE L2 0 3313 2922 372 94 0 0 chr15 85333108 85333161 -16047360 + (CA)n Simple_repeat Simple_repeat 2 54 0 1957 155 7 0 chr15 85334480 85334493 -16046028 - AluSx SINE Alu -13 299 288 207 0 0 0 chr15 85334493 85334516 -16046005 + (TA)n Simple_repeat Simple_repeat 1 23 0 1957 155 7 0 chr15 85334516 85334799 -16045722 - AluSx SINE Alu -24 288 1 807 153 0 0 chr15 85335425 85335543 -16044978 + FLAM_C SINE Alu 1 118 -25 198 295 16 0 chr15 85335959 85336020 -16044501 - MIR SINE MIR -55 153 92 4365 185 30 12 chr15 85336039 85337399 -16043122 + L1MB5 LINE L1 4777 6166 -8 2255 111 0 3 chr15 85338353 85338651 -16041870 - AluSq SINE Alu -16 297 1 257 325 33 40 chr15 85338793 85338944 -16041577 - MIR SINE MIR -57 205 56 877 225 53 5 chr15 85339404 85339613 -16040908 + MER58A DNA MER1_type 6 224 0 454 308 98 19 chr15 85339734 85339948 -16040573 + MIR SINE MIR 13 243 -19 244 362 43 12 chr15 85341286 85341449 -16039072 - MIR SINE MIR -2 260 93 344 58 0 19 chr15 85341915 85341967 -16038554 + (TTTTA)n Simple_repeat Simple_repeat 1 51 0 610 14 0 0 chr15 85341967 85342039 -16038482 - L1PA3 LINE L1 -24 6131 6060 414 0 0 0 chr15 85344076 85344122 -16036399 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 413 284 28 0 chr15 85345066 85345175 -16035346 + L2 LINE L2 3149 3260 -12 350 379 25 15 chr15 85345536 85345734 -16034787 + MIR SINE MIR 32 231 -31 1722 127 77 44 chr15 85345895 85346258 -16034263 + THE1C LTR MaLR 1 375 0 927 209 0 29 chr15 85346505 85346711 -16033810 + MER20 DNA MER1_type 1 200 -19 1049 220 6 68 chr15 85348120 85348456 -16032065 + MLT1B LTR MaLR 76 390 0 187 262 0 0 chr15 85349339 85349381 -16031140 - L2 LINE L2 -10 3303 3262 194 264 0 19 chr15 85349720 85349773 -16030748 + MIR SINE MIR 200 251 -11 210 354 28 49 chr15 85350422 85350566 -16029955 + L3 LINE CR1 327 467 -1110 311 304 96 27 chr15 85350677 85350858 -16029663 + MIR SINE MIR 7 189 -32 262 203 0 17 chr15 85351468 85351527 -16028994 + L2 LINE L2 3256 3313 0 587 243 124 15 chr15 85351543 85351745 -16028776 + MER58A DNA MER1_type 1 224 0 285 270 191 28 chr15 85351809 85351998 -16028523 - MIR SINE MIR -25 237 15 202 268 85 0 chr15 85352896 85352978 -16027543 + L2 LINE L2 3139 3227 -86 2339 77 0 26 chr15 85355678 85355988 -16024533 + AluY SINE Alu 1 302 -9 490 311 65 77 chr15 85356739 85356987 -16023534 + MIR SINE MIR 16 260 -2 2116 125 0 24 chr15 85357699 85357996 -16022525 + AluSg SINE Alu 1 290 -20 2351 88 12 0 chr15 85358120 85358448 -16022073 + L1PA5 LINE L1 5823 6154 0 206 152 0 22 chr15 85359502 85359548 -16020973 + CT-rich Low_complexity Low_complexity 3 47 0 216 382 132 5 chr15 85359585 85359797 -16020724 + MIR SINE MIR 4 242 -20 * 574 299 99 83 chr15 85359777 85360332 -16020189 + L2 LINE L2 2020 2583 -731 333 326 165 5 chr15 85360422 85360640 -16019881 - L2 LINE L2 -2066 1248 996 17825 33 5 1 chr15 85360644 85363568 -16016953 + L1PA4 LINE L1 3229 6153 -2 1315 295 92 42 chr15 85363683 85363855 -16016666 - L2 LINE L2 -2302 1012 850 2448 66 0 3 chr15 85363855 85364159 -16016362 + AluY SINE Alu 1 303 -8 1315 295 92 42 chr15 85364159 85364524 -16015997 - L2 LINE L2 -2464 850 437 2243 178 54 2 chr15 85364524 85364929 -16015592 + MSTB LTR MaLR 1 426 0 1315 295 92 42 chr15 85364929 85365010 -16015511 - L2 LINE L2 -2876 438 362 262 360 11 22 chr15 85366845 85366934 -16013587 + MIR SINE MIR 30 117 -91 351 340 84 75 chr15 85368433 85368768 -16011753 - L2 LINE L2 -9 3263 2926 23 0 0 0 chr15 85368867 85368890 -16011631 + AT_rich Low_complexity Low_complexity 1 23 0 943 246 66 4 chr15 85369185 85369413 -16011108 - MIR SINE MIR 0 262 21 242 320 93 10 chr15 85369817 85369914 -16010607 - L2 LINE L2 0 3272 3168 22 35 0 0 chr15 85370609 85370638 -16009883 + AT_rich Low_complexity Low_complexity 1 29 0 196 281 94 78 chr15 85370764 85370892 -16009629 - MIR SINE MIR -54 208 79 349 148 25 12 chr15 85371452 85371533 -16008988 + (CATAA)n Simple_repeat Simple_repeat 2 83 0 812 319 49 62 chr15 85371552 85372066 -16008455 + L2 LINE L2 2807 3313 0 430 235 69 20 chr15 85372099 85372308 -16008213 - LTR40b LTR ERVL 0 462 203 416 123 14 0 chr15 85372340 85372413 -16008108 + GA-rich Low_complexity Low_complexity 1 74 0 360 308 49 110 chr15 85373239 85373370 -16007151 - L2 LINE L2 -12 3260 3122 881 206 13 57 chr15 85373370 85373598 -16006923 + MER20 DNA MER1_type 1 218 -1 360 308 49 110 chr15 85373598 85373774 -16006747 - L2 LINE L2 -150 3122 2972 879 261 149 3 chr15 85373973 85374321 -16006200 + MLT1J2 LTR MaLR 49 447 -3 222 343 137 7 chr15 85374334 85374480 -16006041 - MIR SINE MIR -45 217 53 358 289 99 70 chr15 85375189 85375431 -16005090 + MLT1K LTR MaLR 16 264 -324 1229 313 53 20 chr15 85375437 85376035 -16004486 - L2 LINE L2 -913 2401 1784 1671 25 0 0 chr15 85376492 85376696 -16003825 - L1PA4 LINE L1 -60 6095 5892 914 251 36 20 chr15 85379592 85379839 -16000682 + MIR SINE MIR 12 262 0 209 224 40 32 chr15 85379839 85379964 -16000557 + (TTATA)n Simple_repeat Simple_repeat 5 130 0 322 354 34 1 chr15 85380989 85381138 -15999383 + MIR SINE MIR 38 189 -63 799 101 34 34 chr15 85381654 85381833 -15998688 + CT-rich Low_complexity Low_complexity 2 180 0 227 309 48 12 chr15 85382182 85382266 -15998255 - MIR SINE MIR -140 122 36 201 328 131 40 chr15 85384007 85384495 -15996026 - L2 LINE L2 -181 3091 2559 181 229 125 0 chr15 85385159 85385207 -15995314 - MIR SINE MIR -125 83 30 190 254 0 212 chr15 85385494 85385612 -15994909 + MER5B DNA MER1_type 7 99 -79 1985 162 0 35 chr15 85387133 85387479 -15993042 + MER1B DNA MER1_type 3 336 -1 342 241 46 86 chr15 85387866 85388040 -15992481 + MIR SINE MIR 90 256 -6 270 333 54 27 chr15 85389948 85390095 -15990426 - MIR SINE MIR -66 196 46 1771 136 0 18 chr15 85390119 85390392 -15990129 + AluSq SINE Alu 34 301 -12 342 45 0 0 chr15 85390644 85390688 -15989833 + (CA)n Simple_repeat Simple_repeat 1 44 0 1155 207 63 74 chr15 85390721 85391084 -15989437 + MLT1C LTR MaLR 4 362 -105 430 98 11 109 chr15 85391187 85391279 -15989242 + MLT1C LTR MaLR 373 455 -12 * 1768 133 6 60 chr15 85391278 85391609 -15988912 + MER1B DNA MER1_type 27 339 0 733 292 51 8 chr15 85391761 85391997 -15988524 + MIR SINE MIR 3 248 -14 260 159 0 32 chr15 85392228 85392291 -15988230 + (TAG)n Simple_repeat Simple_repeat 3 63 0 686 288 55 13 chr15 85392539 85392775 -15987746 + MIR SINE MIR 3 248 -14 225 254 18 0 chr15 85393119 85393174 -15987347 - MIR SINE MIR -14 248 193 8012 83 12 3 chr15 85393176 85395135 -15985386 + L1PA7 LINE L1 4233 6152 -2 208 365 0 0 chr15 85395481 85395585 -15984936 - MIR SINE MIR 0 262 159 2465 139 58 23 chr15 85396391 85396824 -15983697 - LTR47A LTR ERVL 0 452 5 262 333 11 0 chr15 85397084 85397171 -15983350 + ERVL LTR ERVL 559 646 -4350 2828 238 35 46 chr15 85397595 85398573 -15981948 + L1MC/D LINE L1 3856 4821 -1325 2027 151 3 0 chr15 85398573 85398884 -15981637 + AluSx SINE Alu 1 312 0 2828 238 35 46 chr15 85398884 85399053 -15981468 + L1MC/D LINE L1 4821 4990 -1156 385 222 9 9 chr15 85399066 85399174 -15981347 + L1MC/D LINE L1 5099 5206 -940 228 172 17 17 chr15 85399275 85399333 -15981188 + L1MC/D LINE L1 5368 5425 -817 455 168 0 20 chr15 85399334 85399435 -15981086 + GA-rich Low_complexity Low_complexity 4 102 0 399 147 73 110 chr15 85399461 85399570 -15980951 + L1MC/D LINE L1 5446 5550 -692 553 60 12 12 chr15 85399570 85399653 -15980868 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 844 200 32 5 chr15 85399653 85399838 -15980683 - L1MD2 LINE L1 -34 6325 6136 624 248 15 96 chr15 85400190 85400388 -15980133 - MER5A DNA MER1_type 0 189 8 361 308 31 71 chr15 85400397 85400621 -15979900 + ERVL LTR ERVL 1264 1447 -3549 434 310 65 50 chr15 85401092 85401476 -15979045 + ERVL LTR ERVL 4952 5341 -423 415 266 137 7 chr15 85402265 85402404 -15978117 - MIR SINE MIR -98 164 8 399 296 85 42 chr15 85403582 85403842 -15976679 + L2 LINE L2 2617 2887 -427 435 323 44 67 chr15 85403891 85404207 -15976314 + L2 LINE L2 3005 3313 0 1063 232 5 5 chr15 85404491 85404715 -15975806 + MER58A DNA MER1_type 1 224 0 1807 147 22 29 chr15 85405768 85406081 -15974440 + AluJo SINE Alu 1 311 -1 733 209 47 65 chr15 85406621 85406836 -15973685 - MER20 DNA MER1_type 0 219 9 2000 99 26 4 chr15 85407550 85407847 -15972674 - AluSx SINE Alu 0 306 4 25 31 0 0 chr15 85408573 85408605 -15971916 + AT_rich Low_complexity Low_complexity 1 32 0 2257 113 0 3 chr15 85408674 85408976 -15971545 + AluSp SINE Alu 1 301 -12 414 295 14 43 chr15 85408976 85409115 -15971406 + MIR SINE MIR 34 168 -94 22 35 0 0 chr15 85410448 85410477 -15970044 + AT_rich Low_complexity Low_complexity 1 29 0 3030 225 69 21 chr15 85410836 85412397 -15968124 - L1ME1 LINE L1 -5 6972 5327 1146 244 62 64 chr15 85412369 85412919 -15967602 - L1ME1 LINE L1 -2182 4775 4227 * 1120 181 17 9 chr15 85412937 85413169 -15967352 + LTR51 LTR ERV1 438 671 0 492 280 78 50 chr15 85413193 85413514 -15967007 - L1ME1 LINE L1 -4586 2552 2223 1883 119 0 0 chr15 85413630 85413898 -15966623 - AluSx SINE Alu 0 312 45 370 274 42 42 chr15 85414016 85414228 -15966293 - L1ME1 LINE L1 -5441 1418 1207 269 253 50 30 chr15 85414289 85414388 -15966133 - L1ME1 LINE L1 -5667 1188 1088 240 316 59 21 chr15 85414813 85415000 -15965521 - L1ME1 LINE L1 -6577 282 89 273 305 124 9 chr15 85415194 85415299 -15965222 - L3 LINE CR1 -404 1173 1057 476 299 174 14 chr15 85415569 85415776 -15964745 - MIR SINE MIR 0 262 23 225 94 0 0 chr15 85416216 85416248 -15964273 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 350 326 51 0 chr15 85417358 85417496 -15963025 + MIR SINE MIR 99 243 -19 193 295 16 33 chr15 85417644 85417705 -15962816 - MIR SINE MIR -106 156 97 22 0 0 0 chr15 85418639 85418661 -15961860 + AT_rich Low_complexity Low_complexity 1 22 0 1844 135 39 65 chr15 85418769 85419154 -15961367 - THE1C LTR MaLR 0 375 1 770 214 60 0 chr15 85419545 85419713 -15960808 + MER5B DNA MER1_type 1 178 0 639 177 82 25 chr15 85419720 85419878 -15960643 + MER5B DNA MER1_type 6 172 -6 487 324 35 12 chr15 85420144 85420317 -15960204 - MIR SINE MIR -78 184 8 483 253 55 0 chr15 85420337 85420483 -15960038 - L1MB7 LINE L1 -13 6171 6018 400 287 11 23 chr15 85420495 85420633 -15959888 + MIR SINE MIR 20 153 -83 364 317 139 0 chr15 85423295 85423455 -15957066 - MIR SINE MIR -2 260 79 321 371 43 9 chr15 85423485 85423706 -15956815 - MIR SINE MIR -35 227 1 * 602 337 78 35 chr15 85423706 85424539 -15955982 + L2 LINE L2 2395 3272 0 306 0 0 0 chr15 85425179 85425213 -15955308 + (TG)n Simple_repeat Simple_repeat 2 35 0 458 273 53 89 chr15 85425257 85425539 -15954982 - L2 LINE L2 0 3313 3042 338 337 89 6 chr15 85425581 85425750 -15954771 - MIR SINE MIR -34 228 46 362 273 97 26 chr15 85426532 85426686 -15953835 + MIR SINE MIR 25 189 -73 464 282 36 41 chr15 85426816 85427011 -15953510 + MIR SINE MIR 55 248 -14 210 164 0 0 chr15 85427121 85427176 -15953345 + (TA)n Simple_repeat Simple_repeat 2 56 0 243 0 0 0 chr15 85427429 85427456 -15953065 + (TG)n Simple_repeat Simple_repeat 1 27 0 250 268 47 63 chr15 85427904 85428031 -15952490 - L2 LINE L2 -1 3312 3188 347 294 39 54 chr15 85428048 85428252 -15952269 - MIR SINE MIR -10 252 52 * 532 304 70 5 chr15 85428214 85428428 -15952093 + MIR SINE MIR 35 262 0 187 235 0 0 chr15 85428654 85428688 -15951833 - L2 LINE L2 -46 3267 3234 * 495 300 57 40 chr15 85428672 85428919 -15951602 + MIR SINE MIR 8 258 -4 2098 123 3 3 chr15 85429153 85429455 -15951066 + AluSx SINE Alu 1 302 -10 318 341 85 0 chr15 85430534 85430698 -15949823 + MIR SINE MIR 79 256 -6 437 345 73 13 chr15 85431072 85431304 -15949217 - MIR SINE MIR -10 252 7 359 266 43 97 chr15 85431633 85431840 -15948681 + L2 LINE L2 3115 3310 -3 315 271 19 28 chr15 85431928 85432035 -15948486 - MIR SINE MIR -73 189 84 400 318 184 10 chr15 85432490 85432691 -15947830 + MIR SINE MIR 26 261 -1 262 279 0 58 chr15 85433018 85433104 -15947417 - L2 LINE L2 -6 3307 3227 1766 118 114 0 chr15 85433112 85433367 -15947154 + AluSx SINE Alu 1 284 -28 185 200 20 40 chr15 85435249 85435299 -15945222 - L3 LINE CR1 -619 958 910 200 122 24 0 chr15 85436207 85436248 -15944273 + (TAA)n Simple_repeat Simple_repeat 1 42 0 395 286 0 9 chr15 85436796 85436901 -15943620 - MIR SINE MIR -107 155 52 380 62 0 0 chr15 85436995 85437043 -15943478 + (A)n Simple_repeat Simple_repeat 1 48 0 2141 118 0 13 chr15 85439012 85439318 -15941203 + AluSg SINE Alu 1 302 -8 1516 206 83 12 chr15 85440004 85440343 -15940178 + MLT1A1 LTR MaLR 1 363 -2 333 311 83 33 chr15 85440446 85440626 -15939895 + MIR SINE MIR 1 189 -73 252 0 0 0 chr15 85440922 85440950 -15939571 + (CA)n Simple_repeat Simple_repeat 2 29 0 903 213 28 28 chr15 85443133 85443349 -15937172 - MER58A DNA MER1_type -2 222 7 449 266 40 8 chr15 85443365 85443489 -15937032 + MIR SINE MIR 109 236 -26 968 211 56 14 chr15 85444759 85444972 -15935549 - MER58A DNA MER1_type -2 222 1 260 259 0 35 chr15 85445069 85445154 -15935367 + CT-rich Low_complexity Low_complexity 3 84 0 409 249 6 6 chr15 85447172 85447345 -15933176 + (TG)n Simple_repeat Simple_repeat 2 174 0 1436 137 0 5 chr15 85448178 85448390 -15932131 - AluSg/x SINE Alu -15 297 87 1023 110 71 11 chr15 85448391 85448573 -15931948 - MSTA LTR MaLR -234 194 2 354 315 54 40 chr15 85448996 85449218 -15931303 + MIR SINE MIR 38 262 0 2326 188 29 104 chr15 85450442 85451037 -15929484 - Tigger7 DNA MER2_type 0 2487 1 1839 163 3 0 chr15 85451071 85451365 -15929156 + AluSx SINE Alu 1 295 -17 21 82 0 0 chr15 85451579 85451628 -15928893 + AT_rich Low_complexity Low_complexity 1 49 0 298 152 13 13 chr15 85453766 85453845 -15926676 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 219 69 0 0 chr15 85454357 85454386 -15926135 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 6470 139 24 11 chr15 85455916 85457828 -15922693 - L1PA11 LINE L1 -2 6172 4250 267 290 126 44 chr15 85459045 85459228 -15921293 + MIR SINE MIR 65 262 0 207 276 138 0 chr15 85460441 85460528 -15919993 - MIR SINE MIR -115 147 49 268 239 7 35 chr15 85461587 85461729 -15918792 + CT-rich Low_complexity Low_complexity 2 139 0 23 0 0 0 chr15 85461938 85461961 -15918560 + AT_rich Low_complexity Low_complexity 1 23 0 339 208 83 0 chr15 85462198 85462294 -15918227 - L1MC3 LINE L1 -1 7784 7681 263 309 26 16 chr15 85462685 85462876 -15917645 - L1MEd LINE L1 -5237 882 690 422 288 82 65 chr15 85463176 85463750 -15916771 - HAL1b LINE L1 -435 913 330 325 287 33 102 chr15 85463930 85464205 -15916316 - L1MEd LINE L1 -4886 1233 978 1857 175 3 10 chr15 85464298 85464612 -15915909 - AluJb SINE Alu 0 312 1 24 32 0 0 chr15 85464615 85464646 -15915875 + AT_rich Low_complexity Low_complexity 1 31 0 1221 194 0 12 chr15 85464787 85465045 -15915476 - L1P LINE L1 -1038 5108 4854 5612 115 26 3 chr15 85465066 85466088 -15914433 + L1PA14 LINE L1 5118 6158 -3 27 62 0 0 chr15 85466116 85466164 -15914357 + AT_rich Low_complexity Low_complexity 1 48 0 1986 164 38 29 chr15 85466324 85466872 -15913649 + MLT2A2 LTR ERVL 1 554 0 225 279 23 0 chr15 85467294 85467380 -15913141 - L1ME LINE L1 -482 5639 5552 332 287 83 25 chr15 85467787 85467944 -15912577 - L1ME LINE L1 -1034 5112 4947 25 75 0 0 chr15 85468225 85468278 -15912243 + AT_rich Low_complexity Low_complexity 1 53 0 1459 250 25 7 chr15 85468481 85468917 -15911604 - L1MD2 LINE L1 -528 6225 5782 * 3989 273 109 57 chr15 85468913 85471002 -15909519 - L1MD2 LINE L1 -4325 2215 18 341 169 38 62 chr15 85471097 85471257 -15909264 + (TTATA)n Simple_repeat Simple_repeat 5 160 0 33 0 0 0 chr15 85471325 85471358 -15909163 + AT_rich Low_complexity Low_complexity 1 33 0 291 279 10 29 chr15 85473525 85473629 -15906892 + CT-rich Low_complexity Low_complexity 1 102 0 498 331 28 0 chr15 85474615 85474796 -15905725 + MIR SINE MIR 51 236 -26 1380 121 5 34 chr15 85474869 85475101 -15905420 + AluSg/x SINE Alu 82 307 0 1079 298 76 29 chr15 85475387 85475873 -15904648 - MLT1J LTR MaLR 0 511 3 426 339 75 71 chr15 85476498 85477061 -15903460 - L2 LINE L2 0 3272 2705 251 309 29 127 chr15 85478322 85478597 -15901924 + L2 LINE L2 3008 3255 -17 348 24 0 0 chr15 85479754 85479795 -15900726 + (CA)n Simple_repeat Simple_repeat 1 41 0 1731 145 0 35 chr15 85480148 85480437 -15900084 + AluJb SINE Alu 1 279 -33 315 330 128 26 chr15 85480894 85481073 -15899448 - MIR SINE MIR -57 205 10 430 324 70 16 chr15 85481145 85481330 -15899191 - MIR SINE MIR -47 215 21 375 306 50 8 chr15 85482223 85482344 -15898177 + L2 LINE L2 3186 3311 -2 23 0 0 0 chr15 85482890 85482913 -15897608 + AT_rich Low_complexity Low_complexity 1 23 0 237 33 0 0 chr15 85482980 85483010 -15897511 + (TG)n Simple_repeat Simple_repeat 1 30 0 386 342 66 0 chr15 85483156 85483308 -15897213 + MIR3 SINE MIR 36 197 -11 378 296 14 21 chr15 85484764 85484906 -15895615 - MIR SINE MIR -74 188 48 422 141 13 0 chr15 85485049 85485127 -15895394 + AluJ/FRAM SINE Alu 227 305 -7 360 0 0 0 chr15 85486140 85486180 -15894341 + (CA)n Simple_repeat Simple_repeat 2 41 0 1456 236 75 28 chr15 85486547 85487103 -15893418 - MLT1E2 LTR MaLR -6 620 55 401 288 106 49 chr15 85487145 85487371 -15893150 - MIR SINE MIR 0 262 24 4281 160 35 12 chr15 85487456 85488219 -15892302 - LTR39 LTR ERV1 0 783 3 2118 118 3 3 chr15 85488868 85489157 -15891364 - AluSx SINE Alu -23 289 1 354 362 0 0 chr15 85490349 85490465 -15890056 - MIR SINE MIR -108 154 39 279 349 0 0 chr15 85490678 85490764 -15889757 + (CA)n Simple_repeat Simple_repeat 1 86 0 187 132 53 26 chr15 85491321 85491359 -15889162 + MER5B DNA MER1_type 3 41 -137 829 116 9 0 chr15 85491363 85491475 -15889046 + AluY SINE Alu 4 116 -195 662 258 26 0 chr15 85491576 85491727 -15888794 - MER5A DNA MER1_type -34 155 1 2284 99 0 0 chr15 85492009 85492356 -15888165 - AluY SINE Alu 0 363 17 249 284 0 32 chr15 85492426 85492521 -15888000 + CT-rich Low_complexity Low_complexity 3 94 0 2016 129 3 3 chr15 85493201 85493529 -15886992 + AluSg SINE Alu 1 310 0 1831 164 10 3 chr15 85493649 85493947 -15886574 + AluJo SINE Alu 1 300 -12 246 242 15 15 chr15 85494273 85494339 -15886182 + (TATG)n Simple_repeat Simple_repeat 1 66 0 21 57 0 0 chr15 85495189 85495224 -15885297 + AT_rich Low_complexity Low_complexity 1 35 0 528 125 154 22 chr15 85495224 85495360 -15885161 - L1MB4 LINE L1 0 6180 6027 258 95 0 24 chr15 85495383 85495425 -15885096 - AluSc SINE Alu -19 280 240 284 210 111 37 chr15 85496514 85496595 -15883926 + MIR SINE MIR 27 113 -95 4843 146 25 7 chr15 85497069 85497838 -15882683 + LTR39 LTR ERV1 1 783 0 450 0 0 0 chr15 85497911 85497961 -15882560 + (CTG)n Simple_repeat Simple_repeat 1 50 0 386 342 86 0 chr15 85498348 85498500 -15882021 - MIR3 SINE MIR -1 207 43 961 201 53 112 chr15 85499480 85499874 -15880647 + LTR8A LTR ERV1 1 371 -356 409 182 0 127 chr15 85499890 85500000 -15880521 + LTR8A LTR ERV1 632 727 0 392 296 92 7 chr15 85500216 85500368 -15880153 + MIR3 SINE MIR 34 198 -10 252 164 127 0 chr15 85501028 85501083 -15879438 + MIR SINE MIR 192 253 -9 309 51 0 0 chr15 85502574 85502613 -15877908 + (TG)n Simple_repeat Simple_repeat 1 39 0 6197 104 8 0 chr15 85502873 85504161 -15876360 + L1PA14 LINE L1 4868 6161 0 2059 160 41 31 chr15 85505438 85505982 -15874539 + MLT2A2 LTR ERVL 1 554 0 22 0 0 0 chr15 85506221 85506243 -15874278 + AT_rich Low_complexity Low_complexity 1 22 0 1197 167 67 94 chr15 85506245 85506544 -15873977 - AluJb SINE Alu -9 293 3 453 257 103 0 chr15 85506616 85506752 -15873769 + MIR SINE MIR 102 251 -11 211 333 152 30 chr15 85506773 85506884 -15873637 - L2 LINE L2 0 3313 3182 2047 176 49 53 chr15 85506884 85507396 -15873125 + LTR54 LTR ERV1 1 510 0 211 333 152 30 chr15 85507396 85507416 -15873105 - L2 LINE L2 -131 3182 3166 763 230 185 88 chr15 85507651 85508352 -15872169 - LTR41 LTR ERVL -4 769 1 1397 218 79 62 chr15 85509811 85510229 -15870292 - LTR9 LTR ERV1 -187 425 1 270 164 16 16 chr15 85510234 85510295 -15870226 - MLT1J2 LTR MaLR -323 127 67 267 286 97 58 chr15 85510355 85510438 -15870083 - L2 LINE L2 -218 3054 2976 2042 85 14 32 chr15 85510438 85510743 -15869778 + AluSp SINE Alu 5 304 0 267 286 97 58 chr15 85510743 85510811 -15869710 - L2 LINE L2 -296 2976 2895 414 313 0 0 chr15 85511179 85511310 -15869211 + MER94 DNA DNA 1 131 -3 1046 156 12 0 chr15 85511445 85511612 -15868909 + FRAM SINE Alu 2 170 -6 1746 173 0 16 chr15 85511730 85512036 -15868485 + AluJb SINE Alu 1 301 -11 213 200 0 0 chr15 85512083 85512118 -15868403 + (TG)n Simple_repeat Simple_repeat 2 36 0 322 349 51 6 chr15 85512280 85512456 -15868065 - MIR SINE MIR -50 212 30 2244 101 16 0 chr15 85512910 85513218 -15867303 + AluSp SINE Alu 1 313 0 22 35 0 0 chr15 85513890 85513919 -15866602 + AT_rich Low_complexity Low_complexity 1 29 0 280 335 132 7 chr15 85514021 85514173 -15866348 + MIR SINE MIR 36 206 -56 447 299 85 0 chr15 85514652 85514829 -15865692 + L1ME3A LINE L1 895 1086 -5033 225 253 0 91 chr15 85515101 85515200 -15865321 + MLT1I LTR MaLR 304 393 -16 588 286 54 0 chr15 85515200 85515368 -15865153 + MER58A DNA MER1_type 1 177 -47 21 57 0 0 chr15 85515489 85515524 -15864997 + AT_rich Low_complexity Low_complexity 1 35 0 353 241 43 0 chr15 85515864 85515980 -15864541 + L1ME3A LINE L1 2293 2413 -3716 301 315 14 0 chr15 85516057 85516130 -15864391 + L1ME3A LINE L1 2447 2520 -3609 669 271 91 30 chr15 85516153 85516816 -15863705 + L1ME3A LINE L1 2628 3330 -2799 207 220 0 0 chr15 85516863 85516913 -15863608 + (TA)n Simple_repeat Simple_repeat 2 51 0 452 257 34 16 chr15 85516915 85517270 -15863251 + L1ME3A LINE L1 5114 5446 -707 521 284 40 14 chr15 85517273 85517421 -15863100 + MER96 DNA MER1_type? 1 152 -23 257 295 49 8 chr15 85517420 85517542 -15862979 + MER96 DNA MER1_type? 48 174 -1 * 914 279 94 16 chr15 85517569 85518057 -15862464 + L1ME3A LINE L1 5520 6045 -108 758 240 31 64 chr15 85518126 85518295 -15862226 - L1MCa LINE L1 -3645 2570 2397 2157 109 17 0 chr15 85518295 85518588 -15861933 + AluSq SINE Alu 1 298 -15 758 240 31 64 chr15 85518588 85518817 -15861704 - L1MCa LINE L1 -3818 2397 2189 4161 213 52 3 chr15 85518830 85519745 -15860776 - L1P LINE L1 -797 5359 4372 1734 163 31 0 chr15 85519745 85520033 -15860488 - AluJb SINE Alu -13 299 3 4161 213 52 3 chr15 85520033 85520286 -15860235 - L1P LINE L1 -1784 4372 4133 3905 157 10 27 chr15 85520288 85521165 -15859356 + L1PA16 LINE L1 5352 6164 -2 802 226 32 51 chr15 85521165 85521479 -15859042 - L1MCa LINE L1 -4214 2182 1875 28 79 0 0 chr15 85521524 85521587 -15858934 + AT_rich Low_complexity Low_complexity 1 63 0 562 328 54 24 chr15 85521607 85521979 -15858542 + L1ME2 LINE L1 2901 3283 -2863 537 333 127 17 chr15 85522183 85522494 -15858027 + L1ME2 LINE L1 5439 5805 -359 1782 172 91 66 chr15 85522494 85522538 -15857983 - MLT2C2 LTR ERVL 0 464 423 784 63 25 25 chr15 85522538 85522696 -15857825 + (TAGA)n Simple_repeat Simple_repeat 4 161 0 1782 172 91 66 chr15 85522696 85523104 -15857417 - MLT2C2 LTR ERVL -41 423 1 537 333 127 17 chr15 85523104 85523195 -15857326 + L1ME2 LINE L1 5805 5885 -279 28 48 0 0 chr15 85523516 85523558 -15856963 + AT_rich Low_complexity Low_complexity 1 42 0 812 295 46 65 chr15 85523645 85524256 -15856265 + L1MC/D LINE L1 4102 4700 -1446 1683 181 6 22 chr15 85524265 85524580 -15855941 + AluJo SINE Alu 1 310 -2 483 174 196 43 chr15 85524596 85524734 -15855787 - MER20 DNA MER1_type -58 161 3 314 307 132 32 chr15 85524734 85524985 -15855536 + L1MC/D LINE L1 4747 5022 -1124 225 332 55 18 chr15 85525027 85525301 -15855220 + L1MC/D LINE L1 5633 5916 -1892 23 33 0 0 chr15 85525616 85525646 -15854875 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr15 85526369 85526399 -15854122 + AT_rich Low_complexity Low_complexity 1 30 0 3357 164 89 20 chr15 85526809 85527598 -15852923 + L1MA9 LINE L1 5470 6312 0 2559 172 26 7 chr15 85527756 85528209 -15852312 - LTR32 LTR ERVL 0 471 10 476 250 158 13 chr15 85529075 85529227 -15851294 + MER5A DNA MER1_type 10 183 -6 216 0 0 0 chr15 85530354 85530378 -15850143 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 273 29 0 0 chr15 85530377 85530411 -15850110 + (TG)n Simple_repeat Simple_repeat 1 34 0 262 315 134 16 chr15 85530436 85530563 -15849958 - MIR SINE MIR -108 154 13 473 181 0 0 chr15 85530569 85530652 -15849869 - MER20 DNA MER1_type 0 219 137 * 970 184 11 38 chr15 85530648 85530833 -15849688 - MER20 DNA MER1_type -39 180 1 6832 59 18 13 chr15 85530984 85531955 -15848566 - L1PA7 LINE L1 0 6154 5176 2334 60 3 3 chr15 85532055 85532354 -15848167 + L1PA7 LINE L1 5840 6138 -16 7752 39 1 0 chr15 85532679 85534391 -15846130 - L1PA4 LINE L1 0 6155 4443 238 255 99 87 chr15 85534545 85534706 -15845815 + MIR SINE MIR 28 190 -72 1576 224 40 6 chr15 85535051 85535404 -15845117 - MLT1A1 LTR MaLR 0 365 1 1303 166 51 4 chr15 85535405 85535640 -15844881 - MLT1A1-int LTR MaLR -1 1734 1489 238 335 0 43 chr15 85535862 85536047 -15844474 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 405 330 66 25 chr15 85536715 85536912 -15843609 - MIR SINE MIR -12 250 46 332 267 27 0 chr15 85537156 85537231 -15843290 - MER2 DNA MER2_type 0 345 269 1171 176 10 0 chr15 85537263 85537467 -15843054 - MER2 DNA MER2_type -138 207 2 2137 134 21 37 chr15 85538092 85538473 -15842048 + THE1C LTR MaLR 1 375 0 280 241 65 19 chr15 85538486 85538594 -15841927 - MER117 DNA MER1_type -84 113 1 440 314 94 29 chr15 85539316 85539561 -15840960 + MIR SINE MIR 2 262 0 237 154 74 0 chr15 85540239 85540401 -15840120 + (TA)n Simple_repeat Simple_repeat 2 175 0 369 161 84 0 chr15 85540416 85540732 -15839789 + (TATAA)n Simple_repeat Simple_repeat 1 342 0 338 163 69 0 chr15 85540717 85541008 -15839513 + (TA)n Simple_repeat Simple_repeat 1 311 0 * 2498 111 0 16 chr15 85541532 85541902 -15838619 - THE1B LTR MaLR 0 364 1 492 321 33 54 chr15 85541935 85542175 -15838346 + L2 LINE L2 2834 3068 -204 203 262 19 9 chr15 85542514 85542621 -15837900 + (TTTA)n Simple_repeat Simple_repeat 4 111 0 387 283 109 37 chr15 85542622 85542997 -15837524 - L1ME4a LINE L1 -160 5961 5560 22 0 0 0 chr15 85543702 85543724 -15836797 + AT_rich Low_complexity Low_complexity 1 22 0 349 240 94 41 chr15 85543937 85544108 -15836413 - L1 LINE L1 -1713 4433 4254 2305 55 0 73 chr15 85545851 85546180 -15834341 - AluY SINE Alu -6 305 1 24 53 0 0 chr15 85547134 85547172 -15833349 + AT_rich Low_complexity Low_complexity 1 38 0 437 337 72 40 chr15 85547201 85547263 -15833258 - L1MC/D LINE L1 -2055 5753 5694 1967 133 0 0 chr15 85547263 85547541 -15832980 - AluSx SINE Alu -11 301 24 437 337 72 40 chr15 85547541 85547950 -15832571 - L1MC/D LINE L1 -2114 5694 5267 22 56 0 0 chr15 85548338 85548374 -15832147 + AT_rich Low_complexity Low_complexity 1 36 0 255 254 75 0 chr15 85548830 85548897 -15831624 + Tigger2 DNA MER2_type 1 72 -2646 * 2417 150 69 5 chr15 85548884 85549303 -15831218 + Tigger2 DNA MER2_type 2273 2718 0 190 0 67 0 chr15 85549436 85549466 -15831055 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 231 331 20 0 chr15 85549474 85549622 -15830899 - L1PA8A LINE L1 -684 5447 5297 343 218 120 49 chr15 85549909 85549928 -15830593 - L1MA10 LINE L1 -2 6332 6314 2040 213 99 63 chr15 85549928 85550730 -15829791 - L1ME2 LINE L1 -9 6155 5296 2158 122 0 3 chr15 85550730 85551041 -15829480 - AluSg SINE Alu 0 310 1 2040 213 99 63 chr15 85551041 85551164 -15829357 - L1ME2 LINE L1 -868 5296 5179 2857 229 110 62 chr15 85551170 85552300 -15828221 - L1ME1 LINE L1 -32 6134 5059 2270 96 3 0 chr15 85552300 85552601 -15827920 - AluSq SINE Alu -11 302 1 2857 229 110 62 chr15 85552601 85553180 -15827341 - L1ME1 LINE L1 -1107 5059 4509 3181 68 7 24 chr15 85553180 85553636 -15826885 - LTR7 LTR ERV1 -2 448 1 2857 229 110 62 chr15 85553636 85554078 -15826443 - L1ME1 LINE L1 -1657 4509 3872 320 357 41 19 chr15 85554200 85554519 -15826002 - L1ME3A LINE L1 -224 5946 5621 313 274 24 40 chr15 85554601 85554725 -15825796 - L1ME3A LINE L1 -567 5603 5482 444 324 67 83 chr15 85554941 85555374 -15825147 - L1ME3A LINE L1 -1642 4504 4083 1770 174 7 10 chr15 85555374 85555678 -15824843 - AluJo SINE Alu -9 303 1 444 324 67 83 chr15 85555678 85555898 -15824623 - L1ME3A LINE L1 -2063 4083 3861 576 309 103 39 chr15 85556045 85556590 -15823931 - L2 LINE L2 -140 3173 2585 2075 137 3 0 chr15 85556609 85556908 -15823613 + AluSx SINE Alu 1 300 -12 568 212 99 57 chr15 85556954 85557166 -15823355 - MIR SINE MIR -11 251 31 261 0 0 0 chr15 85557817 85557846 -15822675 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2370 165 24 5 chr15 85558327 85558739 -15821782 - MSTB LTR MaLR -2 424 5 288 300 50 12 chr15 85559375 85559535 -15820986 - MER20B DNA MER1_type 0 783 618 211 302 38 0 chr15 85559686 85559739 -15820782 - L2 LINE L2 -5 3267 3213 512 226 64 55 chr15 85559832 85560067 -15820454 + L1ME3A LINE L1 5925 6161 -9 195 248 89 30 chr15 85561381 85561482 -15819039 - MIR SINE MIR -35 227 121 1792 170 7 0 chr15 85561482 85561771 -15818750 + AluJb SINE Alu 1 291 -21 208 269 19 0 chr15 85561788 85561840 -15818681 - MIR SINE MIR -130 132 80 1029 249 65 21 chr15 85562540 85562878 -15817643 - L1ME3A LINE L1 -5 6165 5813 628 175 0 0 chr15 85562878 85562981 -15817540 + AluJb SINE Alu 183 285 -27 414 0 0 0 chr15 85564267 85564313 -15816208 + (CA)n Simple_repeat Simple_repeat 2 47 0 1454 308 72 18 chr15 85564457 85565009 -15815512 + MLT1E LTR MaLR 1 582 -11 42 17 0 17 chr15 85565218 85565246 -15815275 + AT_rich Low_complexity Low_complexity 1 28 -31 2515 61 25 0 chr15 85565246 85565572 -15814949 - L1PA5 LINE L1 -7 6147 5814 42 17 0 17 chr15 85565572 85565603 -15814918 + AT_rich Low_complexity Low_complexity 28 59 0 11242 22 0 0 chr15 85565603 85567685 -15812836 - L1PA2 LINE L1 -7 6148 4073 37518 64 57 2 chr15 85567685 85573193 -15807328 - L1PA5 LINE L1 -327 5828 11 187 202 214 24 chr15 85574109 85574193 -15806328 + MIR SINE MIR 41 140 -68 2971 173 13 37 chr15 85574411 85574562 -15805959 + MLT2B3 LTR ERVL 1 154 -400 2015 122 75 20 chr15 85574562 85574907 -15805614 + THE1B LTR MaLR 1 364 0 11466 101 10 3 chr15 85574907 85576475 -15804046 + THE1B-int LTR MaLR 1 1580 0 2094 129 60 14 chr15 85576475 85576823 -15803698 + THE1B LTR MaLR 1 364 0 2971 173 13 37 chr15 85576823 85577212 -15803309 + MLT2B3 LTR ERVL 151 530 -24 246 164 30 90 chr15 85577237 85577304 -15803217 + MLT2D LTR ERVL 357 414 0 731 305 84 36 chr15 85577349 85577765 -15802756 + MLT1J2 LTR MaLR 1 436 -14 324 0 0 0 chr15 85578569 85578605 -15801916 + (CA)n Simple_repeat Simple_repeat 2 37 0 276 350 103 0 chr15 85580226 85580420 -15800101 + MIR SINE MIR 2 215 -47 2335 231 45 6 chr15 85581230 85581742 -15798779 + MLT2B3 LTR ERVL 3 534 -20 236 29 0 29 chr15 85581742 85581776 -15798745 + (TCTA)n Simple_repeat Simple_repeat 1 33 0 236 129 49 0 chr15 85581778 85581824 -15798697 + MLT2B3 LTR ERVL 461 547 -7 201 277 339 18 chr15 85581906 85582018 -15798503 - L2 LINE L2 -3 3269 3122 419 303 11 27 chr15 85582286 85582471 -15798050 + MLT1L LTR MaLR 430 611 -4 182 254 53 132 chr15 85582528 85582642 -15797879 + MER5A DNA MER1_type 55 159 -30 * 318 275 33 11 chr15 85582578 85582669 -15797852 - MER5B DNA MER1_type -85 93 1 421 298 8 16 chr15 85582718 85582839 -15797682 - L2 LINE L2 -204 3068 2949 200 217 33 33 chr15 85582846 85582906 -15797615 + MIR SINE MIR 96 155 -107 18648 205 74 23 chr15 85582920 85588085 -15792436 + L1PA12 LINE L1 7 6801 -783 708 218 34 6 chr15 85588108 85588287 -15792234 + L1P5 LINE L1 6 189 -6674 14656 191 29 16 chr15 85588292 85593012 -15787509 + L1P5 LINE L1 1393 6356 -511 2980 134 0 2 chr15 85593112 85593588 -15786933 - L1P LINE L1 -2415 3731 3257 2810 139 43 0 chr15 85593578 85594238 -15786283 + L1P4 LINE L1 4851 5532 -636 * 1685 195 24 11 chr15 85595332 85595701 -15784820 + L1 LINE L1 4814 5187 -959 1595 177 31 64 chr15 85595804 85596131 -15784390 + L1M1 LINE L1 1736 2051 -5514 1187 131 0 0 chr15 85596132 85596300 -15784221 + AluSg/x SINE Alu 137 304 -8 4527 106 16 1 chr15 85596300 85597009 -15783512 + L1M1 LINE L1 2095 2813 -4752 297 300 37 2 chr15 85597124 85597264 -15783257 - MIR SINE MIR -66 142 49 297 301 37 2 chr15 85597423 85597559 -15782962 - MIR SINE MIR -66 142 49 249 200 0 0 chr15 85598571 85598611 -15781910 + Alu SINE Alu 140 179 -124 480 238 90 16 chr15 85599181 85599303 -15781218 + MIR SINE MIR 20 150 -112 575 262 0 20 chr15 85599304 85599453 -15781068 + FRAM SINE Alu 1 146 -30 240 35 0 0 chr15 85599456 85599485 -15781036 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 190 313 153 47 chr15 85599532 85599682 -15780839 + L2 LINE L2 3148 3313 0 4240 252 31 13 chr15 85600107 85601171 -15779350 + L1PA13 LINE L1 1148 2230 -4557 4126 173 7 1 chr15 85601274 85602424 -15778097 + L1PA15 LINE L1 4775 5931 -234 366 311 42 0 chr15 85602576 85602695 -15777826 - MIR SINE MIR -111 151 28 287 341 11 0 chr15 85603003 85603094 -15777427 + L2 LINE L2 2542 2633 -681 233 284 42 32 chr15 85603118 85603213 -15777308 + L2 LINE L2 2435 2530 -784 230 298 105 61 chr15 85603221 85603560 -15776961 + L2 LINE L2 2696 3066 -247 563 107 48 0 chr15 85603593 85603677 -15776844 - MER72 LTR ERV1 0 722 635 360 306 47 47 chr15 85603964 85604196 -15776325 + MIR SINE MIR 5 236 -26 380 300 91 27 chr15 85604251 85604361 -15776160 + MER5A DNA MER1_type 45 161 -28 903 59 0 0 chr15 85604964 85605083 -15775438 - L1PA5 LINE L1 0 6154 6036 2275 271 24 7 chr15 85605183 85605730 -15774791 - L1M2 LINE L1 -5224 1625 1070 277 377 26 0 chr15 85605882 85605996 -15774525 - L1M2 LINE L1 -6062 787 671 238 366 30 0 chr15 85606410 85606511 -15774010 - L1M2 LINE L1 -6082 767 664 21 36 0 0 chr15 85606687 85606715 -15773806 + AT_rich Low_complexity Low_complexity 1 28 0 252 263 105 44 chr15 85606720 85606834 -15773687 + MIR SINE MIR 129 249 -13 26 0 0 0 chr15 85607528 85607554 -15772967 + AT_rich Low_complexity Low_complexity 1 26 0 537 217 64 13 chr15 85607730 85607887 -15772634 - MLT1J2 LTR MaLR -283 167 3 4101 215 31 30 chr15 85608717 85609832 -15770689 - L1P LINE L1 -2182 3964 2849 9033 169 55 2 chr15 85609944 85612181 -15768340 - L1P4 LINE L1 -416 5745 3380 1068 215 48 72 chr15 85612288 85612707 -15767814 - L1M4 LINE L1 -1043 5103 4695 6063 150 28 23 chr15 85612722 85614310 -15766211 - L1MA3 LINE L1 -7 6298 4691 1142 276 64 27 chr15 85614817 85615190 -15765331 + LTR16C LTR ERVL 103 489 -2 256 255 144 20 chr15 85616096 85616249 -15764272 - MIR SINE MIR -71 191 20 588 197 148 0 chr15 85616254 85616376 -15764145 - Tigger2 DNA MER2_type -11 2707 2568 814 290 83 94 chr15 85616683 85617319 -15763202 - L2 LINE L2 -64 3249 2638 1173 197 76 10 chr15 85618049 85618353 -15762168 + MER33 DNA MER1_type 1 324 0 520 379 0 17 chr15 85619124 85619301 -15761220 - MER91A DNA MER1_type -22 174 1 282 262 0 10 chr15 85619649 85619752 -15760769 - L1MA10 LINE L1 0 6334 6233 1142 310 22 31 chr15 85619776 85620221 -15760300 - L1MEc LINE L1 -5919 477 37 836 283 20 40 chr15 85620222 85620526 -15759995 - MLT1J2 LTR MaLR -152 298 1 333 111 0 0 chr15 85621046 85621100 -15759421 + L1MA10 LINE L1 6268 6321 -13 25 0 0 0 chr15 85621105 85621130 -15759391 + AT_rich Low_complexity Low_complexity 1 25 0 2569 112 3 0 chr15 85621375 85621758 -15758763 + L1PB1 LINE L1 5768 6151 0 2081 96 54 0 chr15 85621762 85622075 -15758446 + L1PA11 LINE L1 5357 5686 -488 203 141 56 0 chr15 85622082 85622131 -15758390 + (TA)n Simple_repeat Simple_repeat 2 58 -18 3593 104 4 0 chr15 85622131 85622642 -15757879 + L1PA11 LINE L1 5660 6172 -2 203 141 56 0 chr15 85622642 85622663 -15757858 + (TA)n Simple_repeat Simple_repeat 58 76 0 186 354 71 20 chr15 85622849 85622948 -15757573 + L2 LINE L2 3186 3289 -24 359 306 83 0 chr15 85623118 85623239 -15757282 - L2 LINE L2 0 3313 3183 320 329 70 0 chr15 85624143 85624286 -15756235 - MIR SINE MIR -57 205 53 216 182 0 0 chr15 85624391 85624435 -15756086 + (CA)n Simple_repeat Simple_repeat 1 44 0 180 0 0 0 chr15 85625912 85625932 -15754589 + (T)n Simple_repeat Simple_repeat 1 20 0 224 253 0 35 chr15 85625981 85626068 -15754453 + T-rich Low_complexity Low_complexity 2 85 0 554 263 29 34 chr15 85626540 85626584 -15753937 - LTR16A1 LTR ERVL -13 444 401 527 114 13 0 chr15 85626584 85626663 -15753858 + MADE1 DNA Mariner 1 80 0 554 263 29 34 chr15 85626663 85626793 -15753728 - LTR16A1 LTR ERVL -56 401 271 1263 94 0 0 chr15 85626893 85627073 -15753448 + (CATA)n Simple_repeat Simple_repeat 1 180 0 227 236 22 22 chr15 85627090 85627179 -15753342 - L1MC4 LINE L1 -1339 6703 6615 185 159 23 0 chr15 85627180 85627224 -15753297 + (TA)n Simple_repeat Simple_repeat 2 46 0 234 273 45 0 chr15 85627225 85627313 -15753208 - L1MC4 LINE L1 -1337 6705 6614 266 227 13 0 chr15 85627316 85627391 -15753130 + (TA)n Simple_repeat Simple_repeat 1 76 0 338 242 11 22 chr15 85627401 85627492 -15753029 - L1MC4 LINE L1 -1339 6703 6614 1144 302 79 40 chr15 85627925 85628634 -15751887 + L1M4 LINE L1 1 737 -5805 23 33 0 0 chr15 85628942 85628972 -15751549 + AT_rich Low_complexity Low_complexity 1 30 0 2097 203 123 29 chr15 85629011 85629764 -15750757 + L1M4 LINE L1 819 1642 -4900 726 255 64 8 chr15 85629762 85630098 -15750423 + L1M4 LINE L1 1927 2373 -4273 * 267 103 0 0 chr15 85630216 85630255 -15750266 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 3021 307 66 29 chr15 85630256 85630676 -15749845 + L1MEc LINE L1 130 533 -5863 1654 149 51 38 chr15 85630676 85631046 -15749475 + THE1C LTR MaLR 1 375 0 3021 307 66 29 chr15 85631046 85632775 -15747746 + L1MEc LINE L1 533 2358 -4038 243 217 341 8 chr15 85632774 85632903 -15747618 + L1M4 LINE L1 5263 5434 -1210 * 593 302 24 19 chr15 85632906 85633111 -15747410 + MLT1H1 LTR MaLR 349 554 -1 241 270 0 47 chr15 85633113 85633224 -15747297 + MLT1H1-int LTR MaLR 2 81 -1290 2179 180 51 10 chr15 85633252 85633663 -15746858 + MSTC LTR MaLR 1 428 0 2165 148 0 12 chr15 85633751 85634089 -15746432 + MER1B DNA MER1_type 1 334 -3 7462 101 1 13 chr15 85634114 85635212 -15745309 + HERVH LTR ERV1 1911 2995 -4718 5802 107 2 2 chr15 85635191 85636045 -15744476 + HERVH LTR ERV1 3140 3993 -3720 * 2763 120 42 3 chr15 85636047 85636637 -15743884 + HERVH LTR ERV1 4488 5149 -2564 1383 122 0 0 chr15 85636678 85636883 -15743638 + HERVH LTR ERV1 5615 5819 -1894 2197 115 53 13 chr15 85636883 85637258 -15743263 + HERVH LTR ERV1 7324 7713 0 2596 77 50 25 chr15 85637258 85637660 -15742861 + LTR7 LTR ERV1 1 412 -38 405 0 0 0 chr15 85638379 85638424 -15742097 + (CA)n Simple_repeat Simple_repeat 2 46 0 230 189 19 19 chr15 85638942 85638995 -15741526 + MER96 DNA MER1_type? 1 53 -122 248 209 0 0 chr15 85639030 85639073 -15741448 + MER96 DNA MER1_type? 132 174 -1 * 709 230 86 55 chr15 85639073 85639497 -15741024 + MLT1H LTR MaLR 114 595 0 23 0 0 0 chr15 85640244 85640267 -15740254 + AT_rich Low_complexity Low_complexity 1 23 0 367 300 225 12 chr15 85640836 85641089 -15739432 + L2 LINE L2 3006 3312 -1 1407 130 109 0 chr15 85641261 85641499 -15739022 - Tigger1 DNA MER2_type 0 2418 2155 * 1982 157 17 22 chr15 85641494 85641851 -15738670 - Tigger1 DNA MER2_type -2059 359 5 263 332 49 130 chr15 85641995 85642365 -15738156 - L2 LINE L2 0 3272 2933 522 288 14 7 chr15 85642986 85643132 -15737389 + L2 LINE L2 2924 3070 -243 213 317 10 67 chr15 85643406 85643510 -15737011 + MIR3 SINE MIR 6 103 -105 416 325 167 21 chr15 85645400 85645778 -15734743 + L1M4 LINE L1 3503 3935 -2211 24 53 0 0 chr15 85646016 85646054 -15734467 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr15 85646132 85646160 -15734361 + AT_rich Low_complexity Low_complexity 1 28 0 300 53 0 0 chr15 85646265 85646303 -15734218 + (CA)n Simple_repeat Simple_repeat 1 38 0 2117 80 0 29 chr15 85646431 85646707 -15733814 + AluY SINE Alu 24 291 -20 7725 197 33 2 chr15 85646768 85648509 -15732012 + L1PA15 LINE L1 3714 5522 -643 316 0 45 0 chr15 85648509 85648553 -15731968 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 7725 197 33 2 chr15 85648553 85649216 -15731305 + L1PA15 LINE L1 5522 6163 -2 25 0 0 0 chr15 85649314 85649339 -15731182 + AT_rich Low_complexity Low_complexity 1 25 0 281 330 26 21 chr15 85649350 85649541 -15730980 + HAL1 LINE L1 1556 1747 -760 216 67 0 0 chr15 85649776 85649806 -15730715 + (CCA)n Simple_repeat Simple_repeat 3 32 0 27 0 0 0 chr15 85649947 85649974 -15730547 + AT_rich Low_complexity Low_complexity 1 27 0 1030 300 36 13 chr15 85650266 85650818 -15729703 - L1 LINE L1 -2298 3848 3268 2331 76 0 3 chr15 85650837 85651125 -15729396 - AluY SINE Alu -24 287 1 2266 113 11 17 chr15 85651167 85651522 -15728999 - THE1A LTR MaLR 0 355 3 1782 115 21 4 chr15 85651524 85651803 -15728718 - THE1A-int LTR MaLR 0 1580 1297 318 269 35 41 chr15 85651959 85652104 -15728417 - MER114 LTR ERV 0 648 505 295 298 23 0 chr15 85652213 85652344 -15728177 - MER114 LTR ERV -467 181 48 253 243 125 14 chr15 85652371 85652515 -15728006 + L1ME3A LINE L1 5152 5311 -835 431 333 27 4 chr15 85652546 85652771 -15727750 + L1ME3A LINE L1 5303 5532 -630 949 297 38 32 chr15 85652776 85652865 -15727656 + L1ME3A LINE L1 5601 5688 -482 750 175 0 29 chr15 85652865 85653002 -15727519 + FLAM_A SINE Alu 1 133 0 949 297 38 32 chr15 85653002 85653383 -15727138 + L1ME3A LINE L1 5688 6074 -96 710 233 84 24 chr15 85653454 85653750 -15726771 - MER114 LTR ERV -128 520 207 433 363 106 9 chr15 85654192 85654636 -15725885 + L1ME3A LINE L1 4567 5053 -1093 668 277 89 29 chr15 85654820 85655220 -15725301 + L1ME3A LINE L1 5278 5702 -468 188 250 0 0 chr15 85656245 85656285 -15724236 - L2 LINE L2 -94 3219 3180 1759 120 0 60 chr15 85657623 85657906 -15722615 + AluSq SINE Alu 21 286 -27 502 258 81 42 chr15 85658373 85658633 -15721888 + L1ME3A LINE L1 5882 6151 -19 273 281 49 6 chr15 85659509 85659673 -15720848 + L1 LINE L1 2148 2318 -3828 1784 118 57 30 chr15 85660479 85660776 -15719745 + AluSg SINE Alu 1 305 -5 640 294 103 25 chr15 85661127 85661447 -15719074 - LTR16A LTR ERVL 0 450 106 1058 308 70 47 chr15 85661482 85661634 -15718887 + MLT2F LTR ERVL 19 166 -497 1832 118 37 78 chr15 85661634 85661955 -15718566 + AluSx SINE Alu 3 310 -2 1058 308 70 47 chr15 85661955 85662419 -15718102 + MLT2F LTR ERVL 166 649 -14 327 331 67 32 chr15 85662535 85662910 -15717611 - L1MC/D LINE L1 -2166 5642 5255 304 296 79 16 chr15 85663339 85663643 -15716878 + L1 LINE L1 4104 4426 -1720 686 276 44 0 chr15 85663920 85664101 -15716420 - MER5A DNA MER1_type 0 189 1 713 206 142 111 chr15 85664935 85664965 -15715556 - MLT1A2 LTR MaLR -14 360 332 2272 106 3 0 chr15 85664965 85665267 -15715254 + AluSx SINE Alu 3 305 -7 713 206 142 111 chr15 85665267 85665434 -15715087 - MLT1A2 LTR MaLR -42 332 172 204 40 0 0 chr15 85665434 85665459 -15715062 + (TC)n Simple_repeat Simple_repeat 2 26 0 713 206 142 111 chr15 85665459 85665604 -15714917 - MLT1A2 LTR MaLR -202 172 6 315 0 0 0 chr15 85666491 85666526 -15713995 + (CA)n Simple_repeat Simple_repeat 2 36 0 457 298 22 33 chr15 85666718 85666923 -15713598 - MIR SINE MIR -19 243 38 212 367 100 0 chr15 85666939 85667059 -15713462 - L2 LINE L2 0 3313 3182 228 337 143 0 chr15 85667145 85667243 -15713278 - L2 LINE L2 -194 3078 2967 266 326 97 43 chr15 85667493 85667751 -15712770 - L2 LINE L2 -1149 2165 1894 2000 176 11 0 chr15 85667780 85668139 -15712382 - L1PB4 LINE L1 -11 6145 5783 931 233 12 16 chr15 85668153 85668398 -15712123 - L1MC/D LINE L1 -1409 4737 4494 2291 229 103 43 chr15 85668512 85669373 -15711148 - L1MC/D LINE L1 -1610 4536 3624 2778 90 43 50 chr15 85670227 85670671 -15709850 - L1PA11 LINE L1 -2 6172 5732 583 229 0 0 chr15 85670795 85670904 -15709617 - Tigger3(Golem) DNA MER2_type -2 3027 2919 350 275 0 0 chr15 85670993 85671073 -15709448 - Tigger3(Golem) DNA MER2_type -2949 80 1 26 30 0 0 chr15 85671716 85671749 -15708772 + AT_rich Low_complexity Low_complexity 1 33 0 329 354 15 0 chr15 85672313 85672443 -15708078 + MIR SINE MIR 44 175 -87 21 36 0 0 chr15 85673431 85673459 -15707062 + AT_rich Low_complexity Low_complexity 1 28 0 255 276 92 0 chr15 85673725 85673823 -15706698 - MIR SINE MIR -37 225 119 650 253 133 81 chr15 85673843 85674256 -15706265 - MLT1G LTR MaLR -13 577 128 2042 141 0 3 chr15 85674256 85674554 -15705967 + AluSx SINE Alu 1 297 -15 650 253 133 81 chr15 85674554 85674681 -15705840 - MLT1G LTR MaLR -462 128 9 206 353 167 0 chr15 85676093 85676195 -15704326 - L2 LINE L2 0 3272 3154 477 258 164 6 chr15 85676478 85676637 -15703884 + MER5A DNA MER1_type 6 189 0 317 139 0 0 chr15 85677466 85677520 -15703001 - MLT2B1 LTR ERVL -1 553 390 737 83 30 0 chr15 85677549 85677681 -15702840 + (TCTA)n Simple_repeat Simple_repeat 2 137 0 1553 215 33 0 chr15 85677707 85678009 -15702512 - MLT2B1 LTR ERVL -208 312 1 714 257 147 65 chr15 85679239 85679667 -15700854 - L2 LINE L2 0 3313 2851 1865 181 9 12 chr15 85680448 85680791 -15699730 + MLT1B LTR MaLR 1 342 -48 22 35 0 0 chr15 85681391 85681420 -15699101 + AT_rich Low_complexity Low_complexity 1 29 0 505 349 113 17 chr15 85681479 85681938 -15698583 - L1ME4a LINE L1 -197 5924 5422 317 337 144 0 chr15 85682038 85682225 -15698296 - MIR SINE MIR -16 246 33 268 308 15 0 chr15 85682307 85682424 -15698097 - MER5B DNA MER1_type -28 161 29 313 303 63 42 chr15 85682457 85682599 -15697922 - MER5A DNA MER1_type 0 189 45 * 354 302 8 32 chr15 85682475 85682601 -15697920 + MER5A DNA MER1_type 34 156 -33 843 71 0 24 chr15 85682604 85682730 -15697791 - L1PA8 LINE L1 -1 6171 6049 212 342 86 17 chr15 85683741 85683858 -15696663 - MIR SINE MIR -106 156 32 512 258 20 26 chr15 85684437 85684588 -15695933 + MIR SINE MIR 42 191 -71 306 106 0 0 chr15 85685012 85685059 -15695462 + (TG)n Simple_repeat Simple_repeat 2 48 0 180 77 0 0 chr15 85685375 85685401 -15695120 + (TG)n Simple_repeat Simple_repeat 2 27 0 301 248 109 20 chr15 85686431 85686532 -15693989 - MIR SINE MIR -8 254 145 773 183 30 146 chr15 85686681 85687009 -15693512 + MLT1A1 LTR MaLR 1 290 -75 1776 203 3 0 chr15 85687048 85687349 -15693172 - AluJb SINE Alu -10 302 1 463 238 67 88 chr15 85688519 85688906 -15691615 - L1ME4a LINE L1 -40 6081 5703 268 139 13 139 chr15 85688906 85688985 -15691536 - MLT1H LTR MaLR -1 548 480 227 303 156 0 chr15 85689184 85689293 -15691228 - MLT1H LTR MaLR -394 155 30 1526 128 10 71 chr15 85689573 85689772 -15690749 - L1PA16 LINE L1 -9 6157 5980 2091 136 7 0 chr15 85689772 85690073 -15690448 - AluSx SINE Alu -9 303 1 1526 128 10 71 chr15 85690073 85690169 -15690352 - L1PA16 LINE L1 -186 5980 5880 4303 189 39 7 chr15 85690170 85691118 -15689403 - L1PA16 LINE L1 -211 5955 4935 2128 131 0 3 chr15 85691118 85691415 -15689106 - AluSg SINE Alu -14 296 1 4303 189 39 7 chr15 85691415 85691909 -15688612 - L1PA16 LINE L1 -1231 4935 4459 333 326 30 23 chr15 85691913 85692045 -15688476 - MER5B DNA MER1_type -45 133 1 227 242 0 15 chr15 85692097 85692163 -15688358 + (CCCA)n Simple_repeat Simple_repeat 3 67 0 286 333 163 0 chr15 85742715 85742838 -15637683 - L2 LINE L2 -8 3264 3122 203 204 91 0 chr15 85743014 85743058 -15637463 - L2 LINE L2 0 3313 3266 189 0 0 0 chr15 85743075 85743096 -15637425 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 16045 72 11 0 chr15 85743971 85746166 -15634355 - L1P LINE L1 -3926 2220 3 2143 128 3 0 chr15 85746167 85746463 -15634058 - AluSx SINE Alu -15 297 1 306 231 154 63 chr15 85746807 85746950 -15633571 + MER5A DNA MER1_type 33 188 -1 2783 152 19 12 chr15 85747539 85748054 -15632467 - L1MA6 LINE L1 -1 6299 5781 207 200 0 0 chr15 85748054 85748089 -15632432 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 953 156 6 11 chr15 85748089 85748269 -15632252 - L1MA6 LINE L1 -502 5798 5620 1328 111 9 18 chr15 85748465 85748690 -15631831 - L1MA6 LINE L1 -706 5594 5372 502 301 81 25 chr15 85748823 85749059 -15631462 - MIR SINE MIR 0 262 14 1527 187 54 83 chr15 85750990 85751471 -15629050 + MLT1C LTR MaLR 1 467 0 23902 46 9 1 chr15 85751834 85755763 -15624758 + L1PA4 LINE L1 2200 6155 0 1895 155 38 18 chr15 85755770 85756170 -15624351 - L1MA4 LINE L1 -5 6295 5888 184 328 97 59 chr15 85756170 85756408 -15624113 + L2 LINE L2 2977 3223 -49 186 163 41 41 chr15 85756452 85756501 -15624020 - L3b LINE CR1 -251 1332 1284 9961 130 128 21 chr15 85757299 85759236 -15621285 - L1P LINE L1 -3990 2156 13 2703 297 52 10 chr15 85759236 85760175 -15620346 + L2 LINE L2 2035 3014 -299 301 89 0 0 chr15 85760209 85760254 -15620267 + MADE1 DNA Mariner 36 80 0 2603 159 24 32 chr15 85760303 85760841 -15619680 + MER41B LTR ERV1 103 467 -11 227 203 16 31 chr15 85763019 85763083 -15617438 + MLT1I LTR MaLR 345 407 -2 212 360 137 24 chr15 85763393 85763604 -15616917 - L2 LINE L2 -646 2668 2434 198 0 0 0 chr15 85763935 85763957 -15616564 + (CTAAG)n Simple_repeat Simple_repeat 4 25 0 253 192 82 27 chr15 85764474 85764547 -15615974 + LTR50 LTR ERVL 17 93 -702 329 115 0 0 chr15 85764927 85764979 -15615542 + LTR33A LTR ERVL 439 490 -33 370 320 23 8 chr15 85765158 85765286 -15615235 - MIR SINE MIR -121 141 12 220 333 0 0 chr15 85765303 85765360 -15615161 + L2 LINE L2 3198 3254 -18 2288 167 14 9 chr15 85766865 85767295 -15613226 + L1PA16 LINE L1 5735 6166 0 352 345 53 23 chr15 85767338 85767509 -15613012 + MER5B DNA MER1_type 1 176 -2 324 243 9 27 chr15 85767639 85767750 -15612771 + MLT1K LTR MaLR 451 559 -29 5039 167 28 77 chr15 85768715 85769885 -15610636 + L1MA4A LINE L1 3617 4712 -1434 1497 193 15 15 chr15 85769885 85770155 -15610366 + AluJo SINE Alu 6 275 -37 5039 167 28 77 chr15 85770155 85770361 -15610160 + L1MA4A LINE L1 4712 4926 -1220 5866 138 7 27 chr15 85770363 85771515 -15609006 + L1MA4A LINE L1 5169 6299 -4 599 287 69 17 chr15 85771528 85771991 -15608530 + L1MC3 LINE L1 2959 3445 -2701 2668 284 77 15 chr15 85772007 85773339 -15607182 + L1MC3 LINE L1 3533 4946 -1200 865 187 73 45 chr15 85774882 85775171 -15605350 - L1MC3 LINE L1 -14 7771 7475 236 244 39 0 chr15 85775231 85775309 -15605212 + MER117 DNA MER1_type 7 87 -110 22 80 0 0 chr15 85775402 85775452 -15605069 + AT_rich Low_complexity Low_complexity 1 50 0 2132 209 58 62 chr15 85776440 85777056 -15603465 + MLT1E2 LTR MaLR 1 614 -12 237 296 0 0 chr15 85777811 85777865 -15602656 + L2 LINE L2 3235 3288 -25 261 0 0 0 chr15 85779744 85779773 -15600748 + (TC)n Simple_repeat Simple_repeat 2 30 0 360 297 102 0 chr15 85779817 85779935 -15600586 - L2 LINE L2 -38 3275 3146 2151 92 4 0 chr15 85780147 85780460 -15600061 + AluSq SINE Alu 1 314 0 1698 200 32 109 chr15 85780587 85780956 -15599565 - MLT1F LTR MaLR 0 542 233 243 61 0 0 chr15 85780956 85780989 -15599532 + (CA)n Simple_repeat Simple_repeat 2 34 0 1698 200 32 109 chr15 85780989 85781204 -15599317 - MLT1F LTR MaLR -309 233 3 197 383 37 0 chr15 85782414 85782495 -15598026 - MIR SINE MIR -104 104 21 2706 197 42 29 chr15 85783666 85784510 -15596011 + L1MC3 LINE L1 5125 5401 -745 2534 222 30 8 chr15 85784595 85785217 -15595304 + L1MC3 LINE L1 6150 6785 -1000 899 251 139 29 chr15 85785222 85785748 -15594773 + LTR1B LTR ERV1 33 616 -210 398 290 148 17 chr15 85785797 85785973 -15594548 - LTR1 LTR ERV1 -559 226 28 484 160 20 30 chr15 85785973 85786091 -15594430 - L1MD3 LINE L1 -1000 6808 6669 3588 158 68 34 chr15 85786271 85787075 -15593446 + L1MC3 LINE L1 6782 7613 -172 212 213 0 0 chr15 85787740 85787787 -15592734 - L2 LINE L2 -4 3309 3263 1012 198 10 0 chr15 85787833 85788025 -15592496 + AluJo SINE Alu 118 311 -1 223 308 98 53 chr15 85788421 85788554 -15591967 - L2 LINE L2 -528 2786 2648 26 50 0 0 chr15 85790312 85790352 -15590169 + AT_rich Low_complexity Low_complexity 1 40 0 203 255 0 0 chr15 85790383 85790430 -15590091 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 234 0 0 0 chr15 85792214 85792240 -15588281 + (TTG)n Simple_repeat Simple_repeat 2 27 0 244 287 104 17 chr15 85792287 85792402 -15588119 - L2 LINE L2 0 3313 3189 320 283 158 33 chr15 85792439 85792591 -15587930 + MIR SINE MIR 1 171 -91 617 305 117 41 chr15 85792749 85793398 -15587123 + L2 LINE L2 2598 3307 -6 268 315 136 12 chr15 85795475 85795637 -15584884 - MIR SINE MIR -2 260 79 603 168 18 0 chr15 85795741 85795908 -15584613 + (TA)n Simple_repeat Simple_repeat 1 170 0 28 0 0 0 chr15 85795924 85795952 -15584569 + AT_rich Low_complexity Low_complexity 1 28 0 1193 301 171 26 chr15 85796546 85797203 -15583318 + L3 LINE CR1 549 1109 -468 1703 184 14 3 chr15 85797203 85797497 -15583024 + AluJb SINE Alu 16 312 0 1193 301 171 26 chr15 85797497 85797568 -15582953 + L3 LINE CR1 1109 1168 -409 314 182 13 0 chr15 85797568 85797645 -15582876 - L1MA7 LINE L1 -9 6282 6205 1193 301 171 26 chr15 85797645 85797774 -15582747 + L3 LINE CR1 1168 1532 -45 328 221 116 12 chr15 85798205 85798291 -15582230 + MIR3 SINE MIR 108 202 -6 228 210 16 16 chr15 85799063 85799125 -15581396 + CT-rich Low_complexity Low_complexity 3 64 0 1469 185 3 63 chr15 85799671 85799990 -15580531 + AluJo SINE Alu 1 300 -12 241 229 0 0 chr15 85800599 85800647 -15579874 + CT-rich Low_complexity Low_complexity 2 49 0 1240 226 45 23 chr15 85801395 85801794 -15578727 + L1MA9 LINE L1 5867 6274 -38 210 214 0 0 chr15 85802083 85802125 -15578396 - L2 LINE L2 -317 2955 2914 2542 139 67 2 chr15 85802396 85802841 -15577680 + L1PA16 LINE L1 5670 6143 -23 667 325 42 34 chr15 85802844 85803201 -15577320 - L2 LINE L2 -609 2705 2346 271 238 0 100 chr15 85804465 85804545 -15575976 - L2 LINE L2 -50 3263 3192 2070 144 0 7 chr15 85804548 85804876 -15575645 - AluSx SINE Alu 0 312 1 291 258 53 58 chr15 85805777 85805967 -15574554 + L1MC5 LINE L1 5621 5809 -1999 333 0 0 0 chr15 85806007 85806044 -15574477 + (TC)n Simple_repeat Simple_repeat 2 38 0 303 71 0 0 chr15 85806043 85806085 -15574436 + (TA)n Simple_repeat Simple_repeat 1 42 0 * 1720 160 8 50 chr15 85806092 85806474 -15574047 - MLT2D LTR ERVL -48 366 1 1599 227 47 70 chr15 85806563 85807136 -15573385 + MER68 LTR ERV1 1 560 -2 233 255 0 0 chr15 85807157 85807204 -15573317 + (CA)n Simple_repeat Simple_repeat 2 48 0 1147 209 19 22 chr15 85807217 85807538 -15572983 - L1MC3 LINE L1 -6 7779 7460 267 302 15 19 chr15 85807582 85807787 -15572734 - L1M4 LINE L1 -2940 3206 3003 215 119 0 104 chr15 85808134 85808201 -15572320 + (TAAAA)n Simple_repeat Simple_repeat 5 64 0 419 235 28 62 chr15 85808520 85808699 -15571822 + L1MC5 LINE L1 6611 6783 -1178 556 269 23 81 chr15 85808755 85809227 -15571294 + L1MC5 LINE L1 6784 7228 -733 347 170 184 27 chr15 85809380 85809527 -15570994 + L1MC5 LINE L1 7300 7469 -492 249 250 0 0 chr15 85809548 85809604 -15570917 + GA-rich Low_complexity Low_complexity 1 56 0 376 129 97 0 chr15 85809932 85810056 -15570465 + CT-rich Low_complexity Low_complexity 2 137 0 2263 114 7 3 chr15 85810056 85810364 -15570157 - AluSx SINE Alu -1 311 3 295 89 36 0 chr15 85810612 85810668 -15569853 + (CA)n Simple_repeat Simple_repeat 2 59 0 449 278 111 5 chr15 85811065 85811281 -15569240 - L1ME LINE L1 -382 5739 5501 1571 260 35 12 chr15 85812484 85812972 -15567549 - LTR26 LTR ERV1 0 603 105 196 384 80 0 chr15 85813588 85813700 -15566821 + L2 LINE L2 3191 3311 -2 2220 100 3 0 chr15 85813711 85814001 -15566520 + AluSc SINE Alu 18 308 -1 26 50 0 0 chr15 85814272 85814312 -15566209 + AT_rich Low_complexity Low_complexity 1 40 0 260 392 42 12 chr15 85814337 85814503 -15566018 + L2 LINE L2 2873 3043 -270 287 310 11 0 chr15 85814590 85814677 -15565844 + L2 LINE L2 3226 3313 0 186 278 83 14 chr15 85815816 85815888 -15564633 + MIR SINE MIR 7 83 -179 215 189 0 0 chr15 85816004 85816041 -15564480 + MIR SINE MIR 110 146 -116 484 280 8 0 chr15 85817238 85817370 -15563151 - MLT1H LTR MaLR -416 133 1 4339 154 11 9 chr15 85817457 85818449 -15562072 + L1MA5A LINE L1 5039 6032 -265 296 294 34 34 chr15 85818784 85818949 -15561572 + MIR SINE MIR 60 219 -43 379 299 91 8 chr15 85818965 85819229 -15561292 + L1M4 LINE L1 1180 1465 -4919 2005 61 4 29 chr15 85819277 85819556 -15560965 - L1PA8 LINE L1 -9 6163 5892 1503 259 81 39 chr15 85819568 85820579 -15559942 + L1M4 LINE L1 4613 5675 -743 1895 175 0 3 chr15 85820581 85820890 -15559631 + AluJo SINE Alu 1 308 -4 854 200 0 54 chr15 85820904 85821089 -15559432 + FAM SINE Alu 1 175 0 234 288 99 36 chr15 85821487 85821598 -15558923 + MIR SINE MIR 80 197 -65 1754 163 21 0 chr15 85822206 85822331 -15558190 + AluSx SINE Alu 1 122 -190 198 0 0 0 chr15 85822331 85822353 -15558168 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1754 163 21 0 chr15 85822353 85822516 -15558005 + AluSx SINE Alu 122 295 -17 261 327 63 10 chr15 85822607 85822738 -15557783 - MIR SINE MIR -67 141 3 186 43 0 0 chr15 85822754 85822777 -15557744 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 243 338 35 14 chr15 85822778 85822923 -15557598 - L2 LINE L2 -48 3265 3118 793 158 0 158 chr15 85824401 85824597 -15555924 - AluJb SINE Alu -11 301 137 299 305 85 8 chr15 85824608 85824726 -15555795 + MIR SINE MIR 124 250 -12 5113 112 19 2 chr15 85825088 85825890 -15554631 - L1PB1 LINE L1 -1 6150 5336 1028 228 0 0 chr15 85825958 85826208 -15554313 - L1PB1 LINE L1 -812 5334 5085 749 265 5 0 chr15 85826208 85826404 -15554117 + L1 LINE L1 4797 4993 -1153 218 254 132 44 chr15 85826819 85826933 -15553588 - MIR SINE MIR -23 239 116 199 257 71 14 chr15 85827048 85827118 -15553403 - MIR SINE MIR -115 147 74 208 118 20 39 chr15 85827118 85827169 -15553352 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 1969 162 98 0 chr15 85827472 85827880 -15552641 - L1PA16 LINE L1 -12 6154 5707 180 298 0 21 chr15 85827880 85827927 -15552594 - MIR SINE MIR -194 68 23 40290 52 7 2 chr15 85827928 85834040 -15546481 - L1PA4 LINE L1 0 6155 11 234 333 60 18 chr15 85834651 85834819 -15545702 + MARNA DNA Mariner 412 586 0 180 0 0 0 chr15 85834928 85834948 -15545573 + (TTA)n Simple_repeat Simple_repeat 3 22 0 22229 72 8 8 chr15 85834948 85838946 -15541575 - L1PA6 LINE L1 -18 6136 2144 278 50 25 0 chr15 85840493 85840533 -15539988 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1179 308 84 47 chr15 85840787 85841868 -15538653 + L2 LINE L2 2193 3305 -8 21 57 0 0 chr15 85842495 85842530 -15537991 + AT_rich Low_complexity Low_complexity 1 35 0 297 401 22 6 chr15 85842733 85842915 -15537606 + MIR3 SINE MIR 17 201 -7 207 0 0 0 chr15 85843281 85843304 -15537217 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2999 217 146 63 chr15 85844484 85845807 -15534714 + L1MC4a LINE L1 6356 7788 -20 1026 312 78 5 chr15 85846010 85846407 -15534114 - LTR16A LTR ERVL 0 450 25 23 0 0 0 chr15 85846503 85846526 -15533995 + AT_rich Low_complexity Low_complexity 1 23 0 1718 199 27 62 chr15 85846803 85847321 -15533200 + MLT1D LTR MaLR 1 500 -5 6304 175 73 10 chr15 85847830 85849177 -15531344 + L1M4c LINE L1 19 1451 -4933 40362 54 4 2 chr15 85849190 85855334 -15525187 - L1PA4 LINE L1 -4 6151 2 4374 191 62 42 chr15 85855336 85855823 -15524698 + L1M4c LINE L1 1458 1934 -4448 1768 191 21 9 chr15 85855823 85856163 -15524358 - MER2 DNA MER2_type 0 344 1 4374 191 62 42 chr15 85856163 85857570 -15522951 + L1M4c LINE L1 1934 3413 -2969 3327 241 64 10 chr15 85857560 85858648 -15521873 + L1M4c LINE L1 3803 4949 -1433 * 462 325 44 27 chr15 85859912 85860210 -15520311 - MLT1J LTR MaLR -45 466 164 755 283 34 41 chr15 85860228 85860521 -15520000 - LTR16C LTR ERVL -18 473 183 1461 108 0 10 chr15 85861209 85861403 -15519118 + AluSq SINE Alu 99 290 -23 1158 275 27 25 chr15 85861898 85862305 -15518216 + MLT1I LTR MaLR 1 408 -1 432 118 0 0 chr15 85862768 85862836 -15517685 + (TTCC)n Simple_repeat Simple_repeat 1 68 0 1601 202 10 19 chr15 85862988 85863300 -15517221 + AluJb SINE Alu 3 311 -1 188 316 118 0 chr15 85864687 85864763 -15515758 + MIR3 SINE MIR 72 156 -52 1364 221 148 74 chr15 85865937 85865996 -15514525 - MLT1E2 LTR MaLR 0 626 573 1692 180 3 10 chr15 85865996 85866285 -15514236 + AluJb SINE Alu 1 287 -25 231 36 0 0 chr15 85866285 85866313 -15514208 + (TA)n Simple_repeat Simple_repeat 2 29 0 1364 221 148 74 chr15 85866313 85866835 -15513686 - MLT1E2 LTR MaLR -52 574 1 270 327 30 0 chr15 85867180 85867281 -15513240 - MIR SINE MIR -21 241 138 2007 114 0 4 chr15 85867659 85867931 -15512590 - AluSx SINE Alu -20 292 22 21 0 0 0 chr15 85868040 85868061 -15512460 + AT_rich Low_complexity Low_complexity 1 21 0 180 313 21 0 chr15 85868186 85868234 -15512287 + L2 LINE L2 3214 3262 -10 2034 151 7 0 chr15 85868308 85868613 -15511908 + AluSx SINE Alu 1 307 -5 359 258 119 25 chr15 85869285 85869444 -15511077 - MIR SINE MIR -66 196 23 1933 297 66 3 chr15 85870642 85871291 -15509230 + MER69 DNA AcHobo 1 690 -536 1478 233 94 36 chr15 85871293 85872006 -15508515 + MER69 DNA AcHobo 1769 2522 -4 323 317 146 45 chr15 85872208 85872454 -15508067 - MLT1K LTR MaLR -308 280 10 217 327 105 20 chr15 85872811 85872964 -15507557 - MIR SINE MIR -45 217 52 1822 109 0 90 chr15 85874639 85874983 -15505538 - AluSx SINE Alu 0 316 1 915 232 14 0 chr15 85875070 85875290 -15505231 + L1MC1 LINE L1 6106 6328 -5 306 315 167 22 chr15 85875401 85875671 -15504850 + L1M4 LINE L1 2942 3250 -2896 * 392 353 80 29 chr15 85875659 85875934 -15504587 - HAL1b LINE L1 -676 672 384 25 31 0 0 chr15 85876434 85876466 -15504055 + AT_rich Low_complexity Low_complexity 1 32 0 282 121 45 15 chr15 85877466 85877532 -15502989 + CT-rich Low_complexity Low_complexity 4 71 0 991 160 12 0 chr15 85877817 85877986 -15502535 + MER5A DNA MER1_type 14 184 -5 1662 132 0 11 chr15 85878007 85878280 -15502241 + L1MA5 LINE L1 6024 6293 -7 210 309 101 50 chr15 85878494 85878633 -15501888 - L2 LINE L2 -108 3164 3019 370 327 33 33 chr15 85879591 85879805 -15500716 - MIR SINE MIR -34 228 15 1768 170 3 14 chr15 85881134 85881428 -15499093 - AluJo SINE Alu -21 291 1 1270 197 39 36 chr15 85883759 85884089 -15496432 + MLT1A1 LTR MaLR 1 331 -34 850 135 37 30 chr15 85884191 85884646 -15495875 + CT-rich Low_complexity Low_complexity 1 458 0 689 334 139 23 chr15 85884649 85885341 -15495180 + L3 LINE CR1 370 1141 -436 1679 107 0 9 chr15 85885619 85885844 -15494677 - AluSg/x SINE Alu -8 302 80 253 386 63 48 chr15 85886004 85886400 -15494121 + L3 LINE CR1 1159 1560 -17 2055 150 34 6 chr15 85886423 85886777 -15493744 + THE1B LTR MaLR 1 364 0 10058 117 55 3 chr15 85886777 85888280 -15492241 + THE1B-int LTR MaLR 1 1580 0 2454 132 3 6 chr15 85888280 85888645 -15491876 + THE1B LTR MaLR 1 364 0 1398 238 0 13 chr15 85888666 85888973 -15491548 + AluJo SINE Alu 1 303 -9 1376 187 3 78 chr15 85889618 85889939 -15490582 + AluJb SINE Alu 1 297 -15 26 30 0 0 chr15 85890407 85890440 -15490081 + AT_rich Low_complexity Low_complexity 1 33 0 567 322 29 37 chr15 85890623 85890868 -15489653 + MIR SINE MIR 20 262 0 1506 152 0 0 chr15 85893694 85893950 -15486571 - Tigger4(Zombi) DNA MER2_type 0 2731 2476 517 226 0 20 chr15 85893975 85894077 -15486444 - FAM SINE Alu -85 100 1 2023 203 27 11 chr15 85895454 85895699 -15484822 - MLT2B1 LTR ERVL -75 445 188 183 80 0 0 chr15 85895699 85895724 -15484797 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2023 203 27 11 chr15 85895724 85895916 -15484605 - MLT2B1 LTR ERVL -332 188 1 357 313 121 28 chr15 85896741 85896990 -15483531 - L2 LINE L2 -2 3311 3040 219 114 0 0 chr15 85897739 85897774 -15482747 + (CA)n Simple_repeat Simple_repeat 2 36 0 265 301 129 49 chr15 85898465 85898628 -15481893 + MIR SINE MIR 19 192 -70 319 285 70 58 chr15 85898967 85899139 -15481382 + MIR3 SINE MIR 25 198 -10 308 261 48 76 chr15 85900472 85900684 -15479837 + MER63 DNA MER1_type 1 1688 0 287 296 34 4 chr15 85900900 85901091 -15479430 + MLT1I LTR MaLR 75 336 -73 7112 206 39 33 chr15 85901091 85901606 -15478915 + L1MA9 LINE L1 3450 3960 -2352 2588 152 12 2 chr15 85901606 85902034 -15478487 + MSTB1 LTR MaLR 1 432 0 7112 206 39 33 chr15 85902034 85904324 -15476197 + L1MA9 LINE L1 3960 6273 -39 322 322 8 33 chr15 85905210 85905331 -15475190 - MIR SINE MIR -98 164 47 414 249 141 23 chr15 85905679 85905856 -15474665 - L2 LINE L2 -1 3312 3115 685 311 121 5 chr15 85906833 85907248 -15473273 - LTR33A LTR ERVL 0 523 61 575 265 122 11 chr15 85907358 85907547 -15472974 + MER63A DNA MER1_type 1 210 0 310 348 65 68 chr15 85908436 85908761 -15471760 - L2 LINE L2 -36 3236 2913 2547 252 88 14 chr15 85908768 85909741 -15470780 + L1ME1 LINE L1 36 1080 -5316 1149 279 83 10 chr15 85909772 85910353 -15470168 + L1ME1 LINE L1 1196 1818 -4578 5632 247 86 45 chr15 85910508 85910906 -15469615 + L1ME1 LINE L1 2043 2423 -3812 1663 145 67 7 chr15 85910906 85911188 -15469333 - AluJb SINE Alu -13 299 1 5632 247 86 45 chr15 85911188 85913818 -15466703 + L1ME1 LINE L1 2423 4944 -1291 1094 219 39 108 chr15 85913818 85914233 -15466288 + MLT1B LTR MaLR 1 386 -4 5632 247 86 45 chr15 85914233 85914560 -15465961 + L1ME1 LINE L1 4944 5256 -979 2317 80 0 13 chr15 85914560 85914861 -15465660 - AluY SINE Alu -14 297 1 5632 247 86 45 chr15 85914861 85915017 -15465504 + L1ME1 LINE L1 5256 5671 -564 1594 183 10 10 chr15 85915019 85915096 -15465425 + MLT1C LTR MaLR 111 187 -280 2144 125 10 3 chr15 85915096 85915407 -15465114 + AluSq SINE Alu 1 313 0 1594 183 10 10 chr15 85915407 85915640 -15464881 + MLT1C LTR MaLR 186 421 -46 1536 231 77 28 chr15 85915662 85916198 -15464323 + L1ME1 LINE L1 5669 6230 -5 2288 86 0 10 chr15 85916405 85916706 -15463815 + AluSc SINE Alu 1 298 -11 254 153 68 17 chr15 85916998 85917057 -15463464 + MLT1A2 LTR MaLR 313 374 0 637 295 69 10 chr15 85917143 85917448 -15463073 - MER113 DNA MER1_type? -50 471 149 794 268 121 0 chr15 85917448 85917672 -15462849 - MIR SINE MIR -1 261 11 2097 116 10 0 chr15 85968872 85969166 -15411355 + AluSx SINE Alu 1 297 -15 24 54 0 18 chr15 85969206 85969243 -15411278 + AT_rich Low_complexity Low_complexity 1 38 -17 1498 171 32 32 chr15 85969243 85969524 -15410997 - AluJo SINE Alu -31 281 1 24 54 0 18 chr15 85969524 85969542 -15410979 + AT_rich Low_complexity Low_complexity 38 55 0 29 60 0 0 chr15 85970233 85970283 -15410238 + AT_rich Low_complexity Low_complexity 1 50 0 257 271 72 48 chr15 85970618 85970784 -15409737 + L1ME LINE L1 5607 5776 -345 23 0 0 0 chr15 85970819 85970842 -15409679 + AT_rich Low_complexity Low_complexity 1 23 0 1175 28 0 0 chr15 85971165 85971306 -15409215 - L1PA4 LINE L1 -3 6152 6012 22 0 0 0 chr15 85971407 85971429 -15409092 + AT_rich Low_complexity Low_complexity 1 22 0 506 206 69 74 chr15 85971556 85971745 -15408776 - L1MC4 LINE L1 -239 7803 7616 345 260 40 0 chr15 85971748 85971848 -15408673 - L1MC4a LINE L1 -351 7457 7354 33 43 0 0 chr15 85971859 85971906 -15408615 + AT_rich Low_complexity Low_complexity 1 47 0 1363 214 156 56 chr15 85973293 85973792 -15406729 - MLT1H LTR MaLR 0 549 1 185 343 58 7 chr15 85973980 85974117 -15406404 - L2 LINE L2 -632 2682 2539 2097 116 10 0 chr15 85975794 85976088 -15404433 + AluSx SINE Alu 1 297 -15 24 54 0 18 chr15 85976128 85976165 -15404356 + AT_rich Low_complexity Low_complexity 1 38 -17 1498 171 32 32 chr15 85976165 85976446 -15404075 - AluJo SINE Alu -31 281 1 24 54 0 18 chr15 85976446 85976464 -15404057 + AT_rich Low_complexity Low_complexity 38 55 0 29 60 0 0 chr15 85977155 85977205 -15403316 + AT_rich Low_complexity Low_complexity 1 50 0 257 271 72 48 chr15 85977540 85977706 -15402815 + L1ME LINE L1 5607 5776 -345 23 0 0 0 chr15 85977741 85977764 -15402757 + AT_rich Low_complexity Low_complexity 1 23 0 1189 243 107 48 chr15 85977929 85978348 -15402173 - MLT1H LTR MaLR -105 444 1 196 175 32 16 chr15 85979680 85979743 -15400778 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 195 69 0 0 chr15 85979743 85979772 -15400749 + (CATA)n Simple_repeat Simple_repeat 2 30 0 538 303 45 11 chr15 85980206 85980384 -15400137 + MIR SINE MIR 48 231 -31 1593 259 204 2 chr15 85980580 85981075 -15399446 - MLT1G1 LTR MaLR 0 595 1 225 121 0 0 chr15 85981148 85981181 -15399340 - MLT1G1 LTR MaLR -562 33 1 333 145 12 24 chr15 85981411 85981494 -15399027 + GA-rich Low_complexity Low_complexity 3 84 0 259 307 31 16 chr15 85981565 85981692 -15398829 - L1ME LINE L1 -286 5835 5705 390 281 66 0 chr15 85981986 85982107 -15398414 - MIR SINE MIR -28 234 106 412 285 72 84 chr15 85982420 85982823 -15397698 + L2 LINE L2 2045 2442 -872 256 307 117 22 chr15 85983019 85983156 -15397365 - MIR SINE MIR -1 261 112 482 207 9 118 chr15 85983649 85983919 -15396602 + L1MC4a LINE L1 6098 7807 -1 303 234 44 157 chr15 85984271 85984373 -15396148 + L2 LINE L2 2168 2280 -1034 2025 143 7 0 chr15 85984373 85984667 -15395854 - AluSx SINE Alu -16 296 1 303 234 44 157 chr15 85984667 85984927 -15395594 + L2 LINE L2 2280 2489 -825 198 278 113 21 chr15 85985123 85985220 -15395301 + L2 LINE L2 3163 3268 -4 212 195 0 0 chr15 85985284 85985325 -15395196 + L2 LINE L2 3272 3312 -1 30 0 0 0 chr15 85986288 85986318 -15394203 + AT_rich Low_complexity Low_complexity 1 30 0 326 321 26 13 chr15 85987242 85987398 -15393123 - MIR SINE MIR -52 156 2 218 356 111 62 chr15 85987464 85987753 -15392768 - L2 LINE L2 -42 3230 2928 1062 279 86 12 chr15 85987858 85988792 -15391729 + L1ME2 LINE L1 4866 5867 -297 396 228 35 62 chr15 85988818 85988963 -15391558 + L1ME2 LINE L1 5967 6107 -57 249 324 63 18 chr15 85989314 85989425 -15391096 + MIR SINE MIR 23 138 -70 298 264 28 2 chr15 85990570 85990684 -15389837 - MIR SINE MIR -63 145 38 606 227 33 133 chr15 85991525 85991825 -15388696 + MER21B LTR ERV1 1 270 -593 40092 41 22 2 chr15 85991840 85997867 -15382654 - L1PA3 LINE L1 0 6155 2 1651 254 74 13 chr15 85997873 85998397 -15382124 + MER21B LTR ERV1 257 812 -51 25 31 0 0 chr15 85998407 85998439 -15382082 + AT_rich Low_complexity Low_complexity 1 32 0 5185 257 107 24 chr15 85998736 86000625 -15379896 + L1MC1 LINE L1 30 1762 -4802 2231 115 3 0 chr15 86000625 86000920 -15379601 + AluSp SINE Alu 1 296 -17 5185 257 107 24 chr15 86000920 86003589 -15376932 + L1MC1 LINE L1 1762 4924 -1640 601 221 32 0 chr15 86003578 86003736 -15376785 + L1MC1 LINE L1 6186 6348 -1855 * 2815 205 69 45 chr15 86003749 86004279 -15376242 + L1MC3 LINE L1 6827 7391 -394 188 65 0 32 chr15 86004279 86004310 -15376211 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2815 205 69 45 chr15 86004310 86004715 -15375806 + L1MC3 LINE L1 7391 7785 0 225 207 0 17 chr15 86005137 86005195 -15375326 + T-rich Low_complexity Low_complexity 4 60 0 2195 100 3 0 chr15 86005594 86005893 -15374628 - AluSg SINE Alu -10 300 1 355 257 194 29 chr15 86006054 86006229 -15374292 + MIR SINE MIR 58 261 -1 192 260 20 0 chr15 86006415 86006465 -15374056 - L2 LINE L2 -2 3270 3220 967 235 53 15 chr15 86006467 86006807 -15373714 + L1ME LINE L1 4044 4396 -1750 239 262 180 70 chr15 86007092 86007348 -15373173 - L2 LINE L2 -991 2323 2040 585 322 5 5 chr15 86007944 86008143 -15372378 + MIR SINE MIR 64 262 0 329 263 12 0 chr15 86009928 86010008 -15370513 - MIR SINE MIR -108 154 74 639 308 48 41 chr15 86010726 86011209 -15369312 + L1ME LINE L1 5294 5782 -380 21 82 0 0 chr15 86011263 86011312 -15369209 + AT_rich Low_complexity Low_complexity 1 49 0 1246 194 8 0 chr15 86011313 86011550 -15368971 + L1MC1 LINE L1 6463 6701 -50 1957 179 43 2 chr15 86011557 86011994 -15368527 + L1 LINE L1 4118 4572 -1574 415 316 120 10 chr15 86013332 86013541 -15366980 + MIR SINE MIR 24 255 -7 238 308 0 0 chr15 86013715 86013767 -15366754 - MIR SINE MIR -96 112 61 305 266 7 79 chr15 86016668 86016807 -15363714 + MIR SINE MIR 130 258 -4 22 35 0 0 chr15 86017036 86017065 -15363456 + AT_rich Low_complexity Low_complexity 1 29 0 757 227 153 50 chr15 86017525 86017846 -15362675 - MER93b LTR ERV1 0 373 20 2125 136 0 7 chr15 86017853 86018163 -15362358 - AluSx SINE Alu -4 308 1 285 29 0 0 chr15 86018434 86018468 -15362053 + (TG)n Simple_repeat Simple_repeat 1 34 0 1968 147 0 7 chr15 86018519 86018818 -15361703 + AluSx SINE Alu 1 297 -15 669 310 83 28 chr15 86020978 86021401 -15359120 + L2 LINE L2 1547 1992 -1322 2894 288 204 62 chr15 86022937 86023210 -15357311 + L2 LINE L2 17 250 -3064 627 71 0 12 chr15 86023210 86023295 -15357226 - AluJ/FLAM SINE Alu -228 84 1 2894 288 204 62 chr15 86023295 86023859 -15356662 + L2 LINE L2 250 733 -2581 2064 138 0 3 chr15 86023859 86024150 -15356371 - AluSx SINE Alu -22 290 1 2894 288 204 62 chr15 86024150 86025408 -15355113 + L2 LINE L2 733 2505 -809 765 258 70 0 chr15 86025635 86025821 -15354700 - MIR SINE MIR -57 205 7 348 24 0 0 chr15 86025856 86025890 -15354631 + (TG)n Simple_repeat Simple_repeat 1 34 -352 2342 99 0 0 chr15 86025890 86026183 -15354338 + AluSq SINE Alu 1 293 -20 348 24 0 0 chr15 86026183 86026201 -15354320 + (TG)n Simple_repeat Simple_repeat 33 386 0 348 24 0 0 chr15 86026201 86026242 -15354279 + (TG)n Simple_repeat Simple_repeat 2 42 0 552 253 11 45 chr15 86026317 86026495 -15354026 - L2 LINE L2 0 3313 3142 373 196 61 0 chr15 86026495 86026643 -15353878 + (TA)n Simple_repeat Simple_repeat 2 158 0 394 291 55 16 chr15 86026649 86026831 -15353690 + L2 LINE L2 3125 3313 0 411 340 22 11 chr15 86027194 86027379 -15353142 + MIR SINE MIR 63 249 -13 419 298 69 15 chr15 86027410 86027541 -15352980 - MIR SINE MIR -90 172 35 748 250 29 25 chr15 86027633 86027837 -15352684 - MIR SINE MIR -26 236 32 1354 194 73 58 chr15 86028434 86028815 -15351706 - MLT1B LTR MaLR -3 387 1 326 293 66 61 chr15 86029025 86029237 -15351284 - MIR SINE MIR -3 259 47 393 155 47 31 chr15 86029237 86029366 -15351155 + GA-rich Low_complexity Low_complexity 2 132 0 286 291 159 0 chr15 86031060 86031211 -15349310 - MIR SINE MIR -6 256 82 432 364 56 9 chr15 86031530 86031761 -15348760 + MIR SINE MIR 3 244 -18 392 207 114 41 chr15 86031993 86032187 -15348334 + L1 LINE L1 4824 5052 -1094 1992 300 72 35 chr15 86032200 86033053 -15347468 + L1PA16 LINE L1 1 884 -5903 4605 239 47 9 chr15 86033060 86035298 -15345223 + L1PA16 LINE L1 1323 3653 -3144 8391 170 27 11 chr15 86035313 86038085 -15342436 - L1PB2 LINE L1 0 6151 3333 727 259 4 8 chr15 86038115 86038358 -15342163 + L1MB8 LINE L1 2994 3235 -2911 9971 211 25 11 chr15 86038116 86041253 -15339268 + L1PA16 LINE L1 2995 6163 -3 1146 227 39 14 chr15 86041254 86041676 -15338845 + L1MB8 LINE L1 5048 5480 -704 42366 51 3 6 chr15 86041682 86047849 -15332672 + L1PA4 LINE L1 1 6151 -4 2903 194 40 11 chr15 86047838 86048468 -15332053 + L1MB8 LINE L1 5470 6117 -61 * 2410 52 28 0 chr15 86048967 86049255 -15331266 - AluY SINE Alu -15 296 1 385 354 11 29 chr15 86049957 86050132 -15330389 - MIR3 SINE MIR -3 205 34 2367 162 36 9 chr15 86051181 86051601 -15328920 - MSTB1 LTR MaLR -1 431 1 917 266 0 22 chr15 86051619 86051848 -15328673 + MER58A DNA MER1_type 1 224 0 291 342 0 0 chr15 86052861 86052937 -15327584 - L2 LINE L2 0 3272 3197 312 70 0 0 chr15 86052940 86052983 -15327538 + (CA)n Simple_repeat Simple_repeat 2 44 0 2048 252 105 40 chr15 86053037 86053879 -15326642 + L1ME3A LINE L1 5231 6126 -44 406 314 118 46 chr15 86054141 86054555 -15325966 - L2 LINE L2 -470 2844 2401 926 278 116 94 chr15 86054755 86055136 -15325385 + MLT1J LTR MaLR 58 482 0 188 351 0 0 chr15 86055180 86055237 -15325284 - L2 LINE L2 -8 3264 3208 349 271 173 8 chr15 86055401 86055534 -15324987 - MIR SINE MIR -94 168 14 196 304 36 45 chr15 86057725 86057837 -15322684 + MIR SINE MIR 91 201 -61 1958 148 106 23 chr15 86057994 86058033 -15322488 - MSTB1 LTR MaLR 0 432 398 2158 115 0 3 chr15 86058033 86058328 -15322193 + AluSg SINE Alu 1 294 -16 1958 148 106 23 chr15 86058328 86058674 -15321847 - MSTB1 LTR MaLR -34 398 15 1872 279 56 82 chr15 86059039 86061110 -15319411 + L1MCc LINE L1 333 2546 -4576 3336 37 0 0 chr15 86061110 86061516 -15319005 + L1PA4 LINE L1 5747 6152 -3 1872 279 56 82 chr15 86061516 86061826 -15318695 + L1MCc LINE L1 2546 2863 -4259 3520 212 60 48 chr15 86061834 86062892 -15317629 + Tigger6a DNA MER2_type 7 1076 -7 6662 252 61 46 chr15 86062946 86064033 -15316488 + L1MCc LINE L1 2906 3975 -3030 938 232 13 13 chr15 86064033 86064257 -15316264 + MER58A DNA MER1_type 1 224 0 6662 252 61 46 chr15 86064257 86066503 -15314018 + L1MCc LINE L1 3975 6260 -745 289 273 98 42 chr15 86066504 86066647 -15313874 - L2 LINE L2 -546 2768 2618 568 178 86 20 chr15 86066753 86066905 -15313616 + L1MA10 LINE L1 6166 6327 -7 270 291 36 36 chr15 86066918 86067028 -15313493 - L2 LINE L2 -851 2463 2354 2093 118 0 0 chr15 86067069 86067378 -15313143 - AluSx SINE Alu 0 311 3 1347 213 4 22 chr15 86069225 86069498 -15311023 - AluJo SINE Alu -43 269 2 277 396 59 0 chr15 86069550 86069737 -15310784 + L2 LINE L2 2890 3087 -226 309 337 63 11 chr15 86069759 86069949 -15310572 - LTR33A LTR ERVL -28 495 296 1202 252 63 28 chr15 86070057 86070454 -15310067 + MER74B LTR ERVL 160 570 -52 273 307 62 40 chr15 86070776 86070952 -15309569 + L2 LINE L2 3134 3313 0 275 239 0 15 chr15 86071083 86071150 -15309371 + GA-rich Low_complexity Low_complexity 4 69 0 208 222 0 0 chr15 86071225 86071279 -15309242 + C-rich Low_complexity Low_complexity 1 54 0 485 104 13 0 chr15 86071624 86071701 -15308820 + (TCCA)n Simple_repeat Simple_repeat 3 80 0 397 279 73 22 chr15 86072280 86072416 -15308105 - L2 LINE L2 -938 2376 2234 9406 36 4 0 chr15 86072591 86073762 -15306759 + L1P LINE L1 2886 4061 -2085 333 264 22 11 chr15 86073862 86073953 -15306568 - L1MC4 LINE L1 -1339 6703 6612 190 79 26 26 chr15 86073953 86073991 -15306530 + (TA)n Simple_repeat Simple_repeat 1 38 0 1270 166 34 13 chr15 86073993 86074228 -15306293 - LTR39 LTR ERV1 -543 240 1 366 80 0 0 chr15 86074547 86074597 -15305924 + (TCCC)n Simple_repeat Simple_repeat 3 52 0 548 287 104 83 chr15 86074656 86075331 -15305190 + L1M2 LINE L1 761 1449 -5400 11243 32 5 1 chr15 86075545 86077680 -15302841 - L1PA3 LINE L1 0 6155 4014 180 239 43 0 chr15 86078397 86078443 -15302078 + MIR SINE MIR 119 166 -96 876 89 0 0 chr15 86079848 86079971 -15300550 + (TA)n Simple_repeat Simple_repeat 2 124 0 6609 116 10 12 chr15 86080244 86081298 -15299223 - L1P LINE L1 -743 5403 4352 599 282 106 45 chr15 86081383 86081855 -15298666 - L1ME LINE L1 -367 5803 5303 270 309 99 35 chr15 86082043 86082968 -15297553 - L1ME LINE L1 -1102 5044 4060 762 177 0 0 chr15 86083333 86083457 -15297064 + AluJb SINE Alu 1 124 -188 229 162 29 0 chr15 86084068 86084136 -15296385 + (TA)n Simple_repeat Simple_repeat 2 71 0 846 151 194 108 chr15 86085011 86085289 -15295232 - AluJo SINE Alu 0 302 1 1118 73 24 12 chr15 86085311 86085476 -15295045 - L1PA5 LINE L1 0 6154 5988 1499 134 16 8 chr15 86085782 86086029 -15294492 + L1PB4 LINE L1 5908 6156 0 253 123 18 0 chr15 86086159 86086216 -15294305 - MER4-int LTR ERV1 -5436 1162 1105 22 0 0 0 chr15 86086305 86086327 -15294194 + AT_rich Low_complexity Low_complexity 1 22 0 690 159 0 0 chr15 86086502 86086609 -15293912 - U6 snRNA snRNA 0 107 1 1306 254 53 34 chr15 86086610 86087117 -15293404 - L1MC/D LINE L1 -2030 5778 5262 27 73 0 0 chr15 86087174 86087229 -15293292 + AT_rich Low_complexity Low_complexity 1 55 0 182 128 51 34 chr15 86087229 86087346 -15293175 + (TA)n Simple_repeat Simple_repeat 1 119 0 306 0 0 0 chr15 86087493 86087527 -15292994 + (TA)n Simple_repeat Simple_repeat 2 35 0 2232 103 7 0 chr15 86087527 86087829 -15292692 - AluSc SINE Alu -3 306 3 3178 169 48 6 chr15 86087830 86088375 -15292146 + LTR39 LTR ERV1 216 783 0 183 290 188 102 chr15 86088414 86088590 -15291931 + L2 LINE L2 3042 3232 -40 203 298 0 0 chr15 86088620 86088667 -15291854 + polypurine Low_complexity Low_complexity 4 50 0 374 292 22 0 chr15 86089403 86089492 -15291029 - L3 LINE CR1 -1452 125 35 183 276 35 35 chr15 86090328 86090386 -15290135 + L2 LINE L2 2717 2774 -540 195 325 48 42 chr15 86090463 86090629 -15289892 + L2 LINE L2 2893 3059 -213 225 222 0 0 chr15 86090915 86090960 -15289561 + L2 LINE L2 3175 3219 -94 205 204 0 20 chr15 86091129 86091178 -15289343 + (CTAAT)n Simple_repeat Simple_repeat 1 48 0 242 236 97 0 chr15 86091286 86091358 -15289163 + L2 LINE L2 3197 3275 -38 38 61 0 0 chr15 86092882 86092948 -15287573 + AT_rich Low_complexity Low_complexity 1 66 0 189 288 14 48 chr15 86093874 86093978 -15286543 + MIR SINE MIR 60 161 -47 2431 186 49 40 chr15 86094307 86094857 -15285664 - MER34B LTR ERV1 0 565 11 338 203 55 76 chr15 86096069 86096212 -15284309 + MLT1J1 LTR MaLR 304 446 0 198 0 0 0 chr15 86097840 86097862 -15282659 + (CA)n Simple_repeat Simple_repeat 1 22 0 814 258 70 49 chr15 86097966 86097992 -15282529 - L2 LINE L2 -1 3312 3288 2864 166 31 9 chr15 86097992 86098539 -15281982 - MER89 LTR ERV1 0 559 1 814 258 70 49 chr15 86098539 86098799 -15281722 - L2 LINE L2 -25 3288 3020 417 217 66 19 chr15 86098981 86099087 -15281434 + MIR SINE MIR 78 188 -74 333 262 21 10 chr15 86099745 86099892 -15280629 - MER5A DNA MER1_type -1 188 1 293 129 0 32 chr15 86100970 86101032 -15279489 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 409 313 55 8 chr15 86101065 86101193 -15279328 + MIR SINE MIR 17 150 -58 2278 117 0 0 chr15 86101197 86101495 -15279026 + AluSx SINE Alu 1 298 -14 597 304 131 24 chr15 86102383 86102719 -15277802 + L3 LINE CR1 1178 1549 -28 249 258 48 0 chr15 86103393 86103455 -15277066 - AluJ/FLAM SINE Alu -237 65 1 264 241 80 75 chr15 86103470 86103657 -15276864 - L1ME LINE L1 -305 5816 5629 740 241 121 28 chr15 86103661 86104112 -15276409 + MLT1J LTR MaLR 6 511 0 494 289 33 39 chr15 86104128 86104351 -15276170 - L1ME LINE L1 -513 5608 5385 30 0 0 0 chr15 86105031 86105061 -15275460 + AT_rich Low_complexity Low_complexity 1 30 0 486 267 92 0 chr15 86105593 86105724 -15274797 - MIR SINE MIR -10 252 110 525 339 28 20 chr15 86106115 86106363 -15274158 - MIR SINE MIR -1 261 12 1984 144 125 13 chr15 86106363 86106746 -15273775 - MSTA LTR MaLR -2 426 1 549 285 162 9 chr15 86106968 86107424 -15273097 + L1M4 LINE L1 3359 3884 -2262 21 71 0 0 chr15 86107454 86107496 -15273025 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr15 86107936 86107972 -15272549 + AT_rich Low_complexity Low_complexity 1 36 0 2157 110 0 0 chr15 86108024 86108316 -15272205 - AluSx SINE Alu -8 304 13 239 149 21 0 chr15 86108316 86108354 -15272167 - Alu SINE Alu -261 42 1 375 360 42 36 chr15 86108354 86108690 -15271831 + L1M4 LINE L1 4507 4844 -1302 1740 117 4 16 chr15 86108756 86109003 -15271518 - AluSx SINE Alu -33 279 36 234 307 20 13 chr15 86109006 86109156 -15271365 + L1M4 LINE L1 4892 5042 -1104 1816 209 16 11 chr15 86109259 86109622 -15270899 - MLT1A1 LTR MaLR 0 365 1 2411 148 28 25 chr15 86109896 86110327 -15270194 + MSTB1 LTR MaLR 1 432 0 22 0 0 0 chr15 86110441 86110463 -15270058 + AT_rich Low_complexity Low_complexity 1 22 0 340 332 120 19 chr15 86111456 86111664 -15268857 - MIR SINE MIR -22 240 12 643 14 0 0 chr15 86112295 86112416 -15268105 + L1PA4 LINE L1 6064 6184 0 363 272 51 44 chr15 86113105 86113263 -15267258 + MARNA DNA Mariner 409 567 -19 425 252 74 22 chr15 86114707 86114842 -15265679 + L1MB8 LINE L1 1231 1372 -5487 1497 228 46 12 chr15 86114894 86115373 -15265148 + L1MB8 LINE L1 1352 1846 -5009 423 262 16 8 chr15 86115378 86115500 -15265021 + L1MB8 LINE L1 2212 2334 -4625 * 7277 215 28 54 chr15 86115490 86116160 -15264361 + L1MB8 LINE L1 3632 4318 -2671 1687 196 3 16 chr15 86116160 86116476 -15264045 + AluJo SINE Alu 1 312 0 7277 215 28 54 chr15 86116476 86119241 -15261280 + L1MB8 LINE L1 4318 6975 -14 21 0 0 0 chr15 86119241 86119262 -15261259 + AT_rich Low_complexity Low_complexity 1 21 0 466 281 0 0 chr15 86119700 86119814 -15260707 - MIR3 SINE MIR -5 203 90 1330 101 0 0 chr15 86119911 86120099 -15260422 + L1PA5 LINE L1 5965 6152 -2 599 343 32 18 chr15 86120427 86120707 -15259814 - L3 LINE CR1 -172 1405 1122 180 0 0 0 chr15 86121241 86121261 -15259260 + (A)n Simple_repeat Simple_repeat 1 20 0 217 329 12 12 chr15 86121282 86121364 -15259157 + L2 LINE L2 3153 3234 -38 2401 69 13 10 chr15 86121780 86122085 -15258436 + AluY SINE Alu 2 307 -4 228 227 0 0 chr15 86122623 86122667 -15257854 + (CA)n Simple_repeat Simple_repeat 1 44 0 266 231 55 93 chr15 86122837 86123019 -15257502 - L2 LINE L2 -78 3235 3061 315 314 46 26 chr15 86123951 86124104 -15256417 + MER117 DNA MER1_type 1 156 -41 381 299 115 51 chr15 86124306 86124523 -15255998 + MIR SINE MIR 32 262 0 180 0 0 0 chr15 86124628 86124648 -15255873 + (T)n Simple_repeat Simple_repeat 1 20 0 303 344 98 0 chr15 86124652 86124774 -15255747 + L2 LINE L2 3137 3270 -2 821 341 136 48 chr15 86125360 86126790 -15253731 + L2 LINE L2 529 2085 -1229 1119 283 52 43 chr15 86126836 86127296 -15253225 - LTR16B LTR ERVL 0 464 1 425 361 27 47 chr15 86127415 86127675 -15252846 - L2 LINE L2 -311 3002 2750 2403 57 37 0 chr15 86127675 86127973 -15252548 - AluY SINE Alu -2 309 1 425 361 27 47 chr15 86127973 86128033 -15252488 - L2 LINE L2 -563 2750 2690 457 340 39 51 chr15 86128543 86128955 -15251566 + L1MEd LINE L1 635 1041 -5078 23 0 0 0 chr15 86129689 86129712 -15250809 + AT_rich Low_complexity Low_complexity 1 23 0 382 216 52 10 chr15 86129721 86129818 -15250703 - MER103 DNA DNA -62 104 4 286 336 95 7 chr15 86130270 86130407 -15250114 + MIR SINE MIR 28 176 -86 1220 255 123 35 chr15 86130516 86131039 -15249482 - MLT1F1 LTR MaLR 0 567 1 185 156 0 44 chr15 86131235 86131280 -15249241 + (TATG)n Simple_repeat Simple_repeat 2 44 0 5288 94 3 3 chr15 86131324 86132049 -15248472 - L1PA8A LINE L1 -13 6118 5394 212 247 0 28 chr15 86132489 86132550 -15247971 + CT-rich Low_complexity Low_complexity 3 102 0 23 54 0 0 chr15 86132636 86132673 -15247848 + AT_rich Low_complexity Low_complexity 1 37 0 333 297 67 38 chr15 86133197 86133406 -15247115 - L1 LINE L1 -3660 2486 2272 33 25 0 0 chr15 86133406 86133446 -15247075 + AT_rich Low_complexity Low_complexity 1 40 0 483 317 108 51 chr15 86134044 86134400 -15246121 - HAL1b LINE L1 -588 1718 1384 861 197 100 127 chr15 86134400 86134801 -15245720 + MLT1B LTR MaLR 1 390 0 483 317 108 51 chr15 86134801 86135075 -15245446 - HAL1b LINE L1 -922 1384 308 348 330 47 37 chr15 86135329 86135626 -15244895 - L2 LINE L2 0 3313 3014 1316 185 20 60 chr15 86135749 86136130 -15244391 + MSTC LTR MaLR 1 416 -12 204 40 0 0 chr15 86136130 86136155 -15244366 + (A)n Simple_repeat Simple_repeat 1 25 0 305 291 36 9 chr15 86136181 86136291 -15244230 - L2 LINE L2 -541 2773 2661 574 310 38 6 chr15 86136409 86136567 -15243954 - MER58A DNA MER1_type 0 163 1 284 266 13 13 chr15 86136632 86136711 -15243810 + L2 LINE L2 3233 3311 -2 22 0 0 0 chr15 86137600 86137622 -15242899 + AT_rich Low_complexity Low_complexity 1 22 0 16406 41 30 2 chr15 86138185 86140842 -15239679 + L1P LINE L1 1 2795 -3351 309 264 35 14 chr15 86140949 86141093 -15239428 - L1M4 LINE L1 -1114 5032 4886 398 324 61 40 chr15 86141182 86141429 -15239092 - L1M4 LINE L1 -1462 4684 4433 1250 223 77 6 chr15 86141474 86141811 -15238710 - L1M4 LINE L1 -1134 5012 4652 186 270 95 40 chr15 86142158 86142232 -15238289 + MIR3 SINE MIR 87 164 -44 282 304 143 30 chr15 86142261 86142429 -15238092 + MIR SINE MIR 50 236 -26 302 242 0 0 chr15 86143325 86143391 -15237130 + (TA)n Simple_repeat Simple_repeat 2 67 0 449 279 123 0 chr15 86144227 86144381 -15236140 + MIR SINE MIR 20 192 -70 220 380 70 0 chr15 86144382 86144511 -15236010 + MIR SINE MIR 2 139 -123 412 247 86 82 chr15 86145557 86145824 -15234697 + LTR33 LTR ERVL 12 279 -242 196 214 24 0 chr15 86146006 86146048 -15234473 + L2 LINE L2 3221 3263 -9 1466 226 59 65 chr15 86147578 86148005 -15232516 + L1ME1 LINE L1 5658 6083 -83 3608 99 50 4 chr15 86148005 86148528 -15231993 + L1MA1 LINE L1 5756 6302 0 1466 226 59 65 chr15 86148528 86148610 -15231911 + L1ME1 LINE L1 6083 6164 -2 733 265 45 5 chr15 86148629 86148852 -15231669 + MIR SINE MIR 25 256 -6 253 247 39 26 chr15 86148856 86148933 -15231588 - MIR SINE MIR -24 238 161 227 141 28 28 chr15 86149308 86149379 -15231142 + CT-rich Low_complexity Low_complexity 2 72 0 240 272 62 45 chr15 86149537 86149688 -15230833 + MIR SINE MIR 3 153 -67 208 311 95 0 chr15 86149786 86149860 -15230661 - MIR SINE MIR -79 129 49 351 331 7 46 chr15 86149963 86150114 -15230407 + MIR3 SINE MIR 7 151 -57 236 314 164 0 chr15 86150313 86150453 -15230068 - L3b LINE CR1 -305 1278 1116 591 296 58 0 chr15 86150831 86151003 -15229518 + MER58A DNA MER1_type 12 193 -31 6980 25 1 0 chr15 86151018 86151818 -15228703 - L1PA3 LINE L1 0 6155 5355 185 359 66 9 chr15 86152263 86152369 -15228152 - MIR SINE MIR -64 198 87 2159 129 0 19 chr15 86152420 86152731 -15227790 - AluSx SINE Alu -7 305 1 869 251 6 0 chr15 86152751 86152918 -15227603 - FAM SINE Alu -17 168 1 215 357 0 0 chr15 86154374 86154444 -15226077 - L3 LINE CR1 -881 696 627 189 0 0 0 chr15 86154751 86154772 -15225749 + (CA)n Simple_repeat Simple_repeat 2 22 0 379 368 106 30 chr15 86155522 86156022 -15224499 - L2 LINE L2 -415 2899 2362 246 262 76 14 chr15 86156042 86156218 -15224303 - MIR SINE MIR 0 262 28 243 0 0 0 chr15 86156332 86156359 -15224162 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 349 320 0 0 chr15 86156595 86156692 -15223829 + MER5B DNA MER1_type 7 103 -75 4763 122 9 20 chr15 86156885 86157117 -15223404 - L1PA15 LINE L1 -9 6156 5923 2769 102 11 8 chr15 86157117 86157489 -15223032 + THE1C LTR MaLR 3 375 0 2875 111 0 8 chr15 86157493 86157871 -15222650 + THE1C LTR MaLR 1 375 0 4763 122 9 20 chr15 86157871 86158321 -15222200 - L1PA15 LINE L1 -245 5920 5477 24 32 0 0 chr15 86160196 86160227 -15220294 + AT_rich Low_complexity Low_complexity 1 31 0 2025 184 0 45 chr15 86160593 86160973 -15219548 - MLT1A1 LTR MaLR 0 365 3 588 343 163 18 chr15 86161343 86162084 -15218437 + L2 LINE L2 1913 2761 -553 557 293 111 0 chr15 86165415 86165613 -15214908 - MIR SINE MIR -32 230 11 237 337 36 0 chr15 86165776 86165859 -15214662 + L2 LINE L2 3178 3263 -9 227 215 177 13 chr15 86167008 86167087 -15213434 - MIR3 SINE MIR -7 201 110 335 318 104 0 chr15 86167527 86167681 -15212840 + MIR SINE MIR 26 195 -67 303 122 0 0 chr15 86168156 86168205 -15212316 + (TGGA)n Simple_repeat Simple_repeat 3 51 0 392 326 0 0 chr15 86168232 86168407 -15212114 + C-rich Low_complexity Low_complexity 1 175 0 335 338 57 19 chr15 86168517 86168674 -15211847 - MIR SINE MIR -88 174 12 507 226 19 0 chr15 86168832 86168938 -15211583 - MER94 DNA DNA 0 134 27 293 367 27 7 chr15 86169560 86169707 -15210814 + MIR3 SINE MIR 30 179 -29 236 300 20 50 chr15 86170127 86170227 -15210294 + L2 LINE L2 2241 2337 -977 1816 133 47 4 chr15 86170345 86170624 -15209897 - THE1B LTR MaLR 0 364 74 927 307 57 38 chr15 86170731 86171154 -15209367 + L2 LINE L2 2883 3313 0 1097 257 239 13 chr15 86171307 86171918 -15208603 + LTR50 LTR ERVL 8 756 -39 1638 117 0 0 chr15 86171920 86172134 -15208387 + AluSq SINE Alu 1 214 -99 43756 31 21 1 chr15 86172818 86178845 -15201676 + L1HS LINE L1 4 6155 0 225 182 0 0 chr15 86178847 86178891 -15201630 + L1MA7 LINE L1 5936 5979 -321 869 100 0 8 chr15 86178891 86179021 -15201500 + AluY SINE Alu 183 311 0 581 132 0 74 chr15 86179023 86179144 -15201377 + L1MA7 LINE L1 5972 6083 -208 204 274 20 0 chr15 86179340 86179391 -15201130 + L2 LINE L2 3237 3288 -25 194 356 72 33 chr15 86179397 86179577 -15200944 + MIR SINE MIR 6 192 -70 21 0 0 0 chr15 86180046 86180067 -15200454 + AT_rich Low_complexity Low_complexity 1 21 0 2072 110 35 0 chr15 86180420 86180710 -15199811 - AluSg SINE Alu -10 300 1 416 311 91 29 chr15 86181492 86181733 -15198788 - MIR SINE MIR -4 258 3 243 312 119 9 chr15 86181838 86181947 -15198574 + MIR SINE MIR 15 135 -127 765 254 96 8 chr15 86181975 86182215 -15198306 - MER21B LTR ERV1 -122 741 481 6720 102 1 23 chr15 86282215 86283406 -15097115 - L1PA8A LINE L1 -624 5507 4345 341 111 0 0 chr15 86283506 86283560 -15096961 - HSMAR1 DNA Mariner -1233 54 1 261 293 121 35 chr15 86283974 86284090 -15096431 + MIR SINE MIR 9 134 -128 4531 75 0 9 chr15 86284422 86284992 -15095529 - L1PA8 LINE L1 -6 6166 5602 18204 164 10 28 chr15 86285092 86286367 -15094154 - L1P3 LINE L1 -2031 4430 3134 1649 100 132 29 chr15 86286367 86286647 -15093874 - AluSc SINE Alu 0 309 1 18204 164 10 28 chr15 86286647 86288947 -15091574 - L1P3 LINE L1 -3327 3134 857 1316 136 4 21 chr15 86288946 86289181 -15091340 - L1P3 LINE L1 -5639 236 6 * 353 311 122 12 chr15 86289479 86289643 -15090878 - MIR3 SINE MIR -11 197 16 754 195 8 0 chr15 86289771 86289899 -15090622 + MER94 DNA DNA 5 133 -1 830 299 77 38 chr15 86290485 86290850 -15089671 - MLT1I LTR MaLR -4 405 27 1119 265 145 19 chr15 86291200 86291713 -15088808 - MLT1F1 LTR MaLR 0 567 1 286 354 62 0 chr15 86293850 86293963 -15086558 + MIR SINE MIR 20 139 -123 285 246 40 48 chr15 86294974 86295100 -15085421 - L1MC4 LINE L1 -1 8041 7917 357 183 84 0 chr15 86295251 86295322 -15085199 - L1ME2 LINE L1 -10 6154 6078 * 729 239 39 19 chr15 86295311 86295516 -15085005 + L1ME LINE L1 5418 5626 -538 3132 229 59 5 chr15 86295533 86296727 -15083794 - L1ME2 LINE L1 -117 6047 4799 3157 251 55 6 chr15 86296730 86297715 -15082806 - L1M4 LINE L1 -1186 4960 3928 35 41 0 0 chr15 86297934 86297983 -15082538 + AT_rich Low_complexity Low_complexity 1 49 0 308 245 26 80 chr15 86297985 86298071 -15082450 - L1M4 LINE L1 -917 5229 5153 1957 140 0 3 chr15 86298071 86298363 -15082158 - AluSx SINE Alu -18 294 4 308 245 26 80 chr15 86298363 86298427 -15082094 - L1M4 LINE L1 -993 5153 5087 323 274 48 16 chr15 86298478 86298602 -15081919 + L1M4 LINE L1 2963 3090 -3056 637 365 63 48 chr15 86298628 86299499 -15081022 + L1M4 LINE L1 3144 4038 -2108 410 278 70 17 chr15 86299708 86299938 -15080583 + L1M4 LINE L1 4455 4696 -1450 512 243 21 35 chr15 86299968 86300112 -15080409 + MER69 DNA AcHobo 1 142 -1084 230 239 283 11 chr15 86300248 86300340 -15080181 - MER69 DNA AcHobo -2164 362 246 3278 228 25 24 chr15 86300454 86301364 -15079157 + MER69 DNA AcHobo 1451 2361 -165 642 220 33 0 chr15 86301427 86301577 -15078944 + MER69 DNA AcHobo 2365 2519 -7 1381 216 66 3 chr15 86301652 86301972 -15078549 - MER58B DNA MER1_type 0 341 2 6163 156 12 11 chr15 86302323 86304153 -15076368 + L1PB1 LINE L1 4317 6151 0 243 88 0 0 chr15 86305444 86305478 -15075043 + (CA)n Simple_repeat Simple_repeat 2 35 0 237 33 0 0 chr15 86305630 86305660 -15074861 + (CA)n Simple_repeat Simple_repeat 2 31 0 307 303 118 20 chr15 86306756 86306908 -15073613 - MIR3 SINE MIR -6 202 36 1324 182 184 53 chr15 86307549 86307978 -15072543 - MLT2B2 LTR ERVL -2 552 3 296 286 63 48 chr15 86308373 86308520 -15072001 + MIR SINE MIR 41 187 -60 1467 200 15 15 chr15 86308992 86309322 -15071199 + L1MC4a LINE L1 6282 6611 -1197 749 153 0 0 chr15 86309336 86309454 -15071067 - MER6A DNA MER2_type -399 206 89 1682 210 106 35 chr15 86309468 86309920 -15070601 + L1MC4 LINE L1 6584 7067 -975 2174 193 71 9 chr15 86309920 86310371 -15070150 + MLT1D LTR MaLR 1 479 -26 239 222 0 0 chr15 86310375 86310421 -15070100 + (TG)n Simple_repeat Simple_repeat 1 46 0 3597 170 8 25 chr15 86310465 86311077 -15069444 - MER6A DNA MER2_type -3 602 1 4312 216 30 7 chr15 86311078 86312032 -15068489 + L1MC4 LINE L1 7080 8042 0 253 206 272 22 chr15 86312118 86312210 -15068311 + L2 LINE L2 3150 3264 -8 220 147 0 0 chr15 86312766 86312800 -15067721 - L2 LINE L2 -12 3301 3268 431 285 95 6 chr15 86312900 86313058 -15067463 - MIR SINE MIR -18 244 73 243 349 121 0 chr15 86313458 86313541 -15066980 - L2 LINE L2 -21 3292 3200 771 146 0 4 chr15 86313802 86314017 -15066504 + AluJo SINE Alu 6 300 -12 429 259 117 20 chr15 86314596 86314793 -15065728 - MIR SINE MIR -10 252 37 220 226 38 0 chr15 86314830 86314883 -15065638 - MER5A DNA MER1_type -76 113 59 523 263 0 0 chr15 86314893 86314992 -15065529 + MER81 DNA DNA 16 114 0 2115 137 3 0 chr15 86315027 86315334 -15065187 - AluSx SINE Alu -2 310 3 816 234 83 5 chr15 86315821 86316013 -15064508 + MIR SINE MIR 51 257 -5 194 205 26 0 chr15 86316082 86316121 -15064400 - L2 LINE L2 -1387 1927 1888 262 281 22 34 chr15 86316804 86316893 -15063628 - MIR SINE MIR -118 144 57 254 233 56 22 chr15 86317016 86317106 -15063415 - MER5A DNA MER1_type -72 117 25 192 324 0 0 chr15 86317044 86317115 -15063406 + MER5B DNA MER1_type 102 172 -6 * 493 268 131 0 chr15 86317474 86317627 -15062894 + MIR3 SINE MIR 36 208 0 192 297 153 8 chr15 86319703 86319821 -15060700 - L3 LINE CR1 -222 1355 1221 680 273 63 19 chr15 86319973 86320178 -15060343 - MIR SINE MIR 0 262 49 5260 34 8 0 chr15 86320896 86321487 -15059034 - L1PA4 LINE L1 -5 6150 5555 1579 27 0 0 chr15 86321487 86321670 -15058851 + L1P LINE L1 4464 4646 -1500 800 294 113 41 chr15 86321703 86322727 -15057794 + L1ME3A LINE L1 3663 4760 -1386 761 245 0 48 chr15 86322787 86322995 -15057526 + MER3 DNA MER1_type 12 209 0 776 279 43 21 chr15 86323104 86323632 -15056889 + L1ME3A LINE L1 4930 5466 -724 568 242 16 60 chr15 86323637 86323819 -15056702 + LTR67 LTR ERVL 2 175 -382 425 286 73 44 chr15 86323909 86324115 -15056406 + LTR67 LTR ERVL 326 537 -20 473 309 74 36 chr15 86324122 86324566 -15055955 + L1ME3A LINE L1 5488 5948 -222 21 0 0 0 chr15 86324828 86324849 -15055672 + AT_rich Low_complexity Low_complexity 1 21 0 306 283 9 19 chr15 86324879 86324985 -15055536 - MIR SINE MIR 0 262 158 603 247 96 0 chr15 86324988 86325134 -15055387 - MER5B DNA MER1_type -18 160 1 395 282 35 21 chr15 86325176 86325318 -15055203 + MER5B DNA MER1_type 29 172 -6 243 343 0 0 chr15 86325383 86325450 -15055071 - MER5A DNA MER1_type -67 122 56 363 207 12 12 chr15 86326179 86326261 -15054260 - MER103 DNA DNA -20 146 65 458 275 34 39 chr15 86326440 86326618 -15053903 + MER5B DNA MER1_type 2 178 0 209 326 159 15 chr15 86327050 86327182 -15053339 + MIR SINE MIR 103 253 -9 2220 89 4 0 chr15 86327200 86327519 -15053002 - AluSp SINE Alu 0 320 1 347 293 20 10 chr15 86327536 86327635 -15052886 + L2 LINE L2 3188 3287 -26 499 245 14 36 chr15 86328183 86328322 -15052199 + MLT1K LTR MaLR 369 504 -84 295 188 24 82 chr15 86328350 86328435 -15052086 + MLT1K LTR MaLR 485 564 -24 245 234 126 90 chr15 86328450 86328561 -15051960 + MER5A DNA MER1_type 1 115 -74 290 314 0 0 chr15 86330496 86330566 -15049955 + (TG)n Simple_repeat Simple_repeat 1 70 0 207 0 0 0 chr15 86330890 86330913 -15049608 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1719 129 0 12 chr15 86330916 86331164 -15049357 - AluSg SINE Alu -32 278 34 258 160 0 0 chr15 86331982 86332032 -15048489 + (TG)n Simple_repeat Simple_repeat 1 50 0 23 0 0 0 chr15 86332075 86332098 -15048423 + AT_rich Low_complexity Low_complexity 1 23 0 1876 148 7 13 chr15 86332175 86332473 -15048048 - AluSx SINE Alu -16 296 1 278 119 0 0 chr15 86334292 86334334 -15046187 - HSMAR1 DNA Mariner 0 1287 1246 382 305 26 33 chr15 86334434 86334585 -15045936 - LTR33A LTR ERVL -370 153 4 1951 129 0 7 chr15 86334651 86334929 -15045592 + AluSg SINE Alu 14 289 -21 1140 240 135 29 chr15 86334958 86335446 -15045075 + L2 LINE L2 2751 3261 -52 513 271 116 6 chr15 86335558 86335739 -15044782 - L1MC/D LINE L1 -448 6054 5854 29 28 0 0 chr15 86335746 86335782 -15044739 + AT_rich Low_complexity Low_complexity 1 36 0 303 189 0 78 chr15 86335800 86335890 -15044631 + L1MA1 LINE L1 5987 6069 -233 1233 216 23 32 chr15 86335890 86336238 -15044283 - L1MC/D LINE L1 -635 5867 5523 904 259 57 3 chr15 86336215 86336582 -15043939 - L1MC/D LINE L1 -2869 3537 3151 * 2346 249 16 38 chr15 86336802 86337492 -15043029 + L1PA13 LINE L1 1239 1913 -4874 1634 149 25 29 chr15 86337516 86337791 -15042730 + AluSx SINE Alu 2 275 -37 261 57 0 0 chr15 86338544 86338579 -15041942 + (CA)n Simple_repeat Simple_repeat 2 36 0 866 234 65 57 chr15 86338605 86339080 -15041441 - SST1 Satellite centromeric -14 1549 1071 820 307 20 58 chr15 86339201 86339700 -15040821 + L1PA12 LINE L1 1283 1762 -5819 2164 137 38 41 chr15 86339700 86340065 -15040456 + THE1B LTR MaLR 1 364 0 498 248 14 7 chr15 86340065 86340206 -15040315 - L1P LINE L1 -4417 1729 1588 1792 294 23 46 chr15 86340306 86341206 -15039315 - SST1 Satellite centromeric -683 880 1 1928 107 38 25 chr15 86341546 86341865 -15038656 + LTR7 LTR ERV1 76 450 0 465 191 12 0 chr15 86341865 86341949 -15038572 - MER70-int LTR ERVL -2639 2384 2300 3828 193 85 8 chr15 86341968 86342729 -15037792 - MER70-int LTR ERVL -3947 1076 257 1089 308 88 35 chr15 86342833 86343313 -15037208 - L1MC/D LINE L1 -5896 513 9 24 0 0 0 chr15 86343648 86343672 -15036849 + AT_rich Low_complexity Low_complexity 1 24 0 1308 199 105 22 chr15 86343750 86344026 -15036495 - AluJo SINE Alu -1 301 3 32 26 0 0 chr15 86344319 86344358 -15036163 + AT_rich Low_complexity Low_complexity 1 39 0 1099 83 0 0 chr15 86344450 86344595 -15035926 + L1PA6 LINE L1 6005 6149 -5 32 26 0 0 chr15 86344763 86344802 -15035719 + AT_rich Low_complexity Low_complexity 1 39 0 29 47 0 0 chr15 86344860 86344903 -15035618 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr15 86344920 86344945 -15035576 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr15 86344989 86345018 -15035503 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr15 86345057 86345101 -15035420 + AT_rich Low_complexity Low_complexity 1 44 0 2877 280 16 12 chr15 86345253 86346314 -15034207 + L1P LINE L1 2404 3468 -2678 330 26 0 0 chr15 86346660 86346699 -15033822 + (TG)n Simple_repeat Simple_repeat 1 39 0 21 57 0 0 chr15 86346787 86346822 -15033699 + AT_rich Low_complexity Low_complexity 1 35 0 2837 9 0 0 chr15 86347956 86348274 -15032247 + AluYb8 SINE Alu 1 318 0 310 261 109 0 chr15 86348452 86348544 -15031977 + L2 LINE L2 3202 3303 -10 1248 34 0 0 chr15 86348887 86349036 -15031485 + L1P1 LINE L1 5652 5800 -355 301 42 62 21 chr15 86349038 86349086 -15031435 - MER5B DNA MER1_type -121 57 8 428 297 48 41 chr15 86349903 86350048 -15030473 + MIR SINE MIR 27 172 -90 396 292 43 65 chr15 86350208 86350393 -15030128 - MIR SINE MIR -61 201 21 355 224 0 0 chr15 86350337 86350404 -15030117 + MIR SINE MIR 13 79 -183 * 1376 155 5 0 chr15 86350406 86350625 -15029896 - MER47A DNA MER2_type -1 365 146 483 179 0 0 chr15 86350685 86350769 -15029752 - MER47A DNA MER2_type -231 135 52 5797 34 3 1 chr15 86350870 86351548 -15028973 + L1PA3 LINE L1 5474 6152 -3 1514 149 28 0 chr15 86351567 86351816 -15028705 - Tigger3b DNA MER2_type -644 587 332 416 219 10 31 chr15 86351839 86351935 -15028586 - Tigger3b DNA MER2_type -1137 94 1 1808 130 20 23 chr15 86352011 86352311 -15028210 - AluSx SINE Alu -13 299 1 316 235 62 0 chr15 86353222 86353303 -15027218 + MIR3 SINE MIR 108 193 -15 802 209 6 29 chr15 86355588 86355760 -15024761 - FAM SINE Alu -5 44 1 1862 122 0 37 chr15 86355785 86356111 -15024410 - AluSq SINE Alu 0 315 1 330 194 15 0 chr15 86356153 86356220 -15024301 - MIR SINE MIR -118 144 77 754 132 5 148 chr15 86356492 86356543 -15023978 + Tigger1 DNA MER2_type 2257 2314 -104 1801 132 39 0 chr15 86356543 86356823 -15023698 - AluSx SINE Alu -20 292 2 754 132 5 148 chr15 86356823 86356960 -15023561 + Tigger1 DNA MER2_type 2314 2418 0 443 336 95 16 chr15 86356963 86357278 -15023243 - LTR16C LTR ERVL -17 474 135 1141 272 109 28 chr15 86357448 86357994 -15022527 + MER115 DNA AcHobo 15 643 -50 204 192 39 26 chr15 86359189 86359267 -15021254 + (TTTA)n Simple_repeat Simple_repeat 4 82 0 1134 195 6 70 chr15 86359269 86359582 -15020939 + THE1-int LTR MaLR 460 752 -828 1200 192 0 0 chr15 86359806 86360020 -15020501 - L1MDb LINE L1 -5351 1058 845 1979 221 4 73 chr15 86360021 86360528 -15019993 - MER70A LTR ERVL 0 472 1 4174 188 1 15 chr15 86360536 86360966 -15019555 - MER70A-int LTR ERVL -1 5022 4605 1843 135 3 20 chr15 86360966 86361263 -15019258 + AluSp SINE Alu 1 292 -21 4174 188 1 15 chr15 86361263 86361554 -15018967 - MER70A-int LTR ERVL -418 4605 4311 208 294 64 37 chr15 86361849 86361958 -15018563 - MIR3 SINE MIR -86 122 11 435 231 11 0 chr15 86362209 86362300 -15018221 + MIR SINE MIR 56 147 -115 252 306 79 37 chr15 86363662 86363878 -15016643 + LTR33A LTR ERVL 295 519 -4 249 286 40 91 chr15 86364078 86364277 -15016244 - L2 LINE L2 -6 3307 3119 640 337 122 14 chr15 86364385 86364827 -15015694 - L2 LINE L2 -353 2961 2472 1028 193 28 56 chr15 86365836 86366085 -15014436 + MLT1D LTR MaLR 262 503 -2 1897 247 39 78 chr15 86366094 86366862 -15013659 - MER31-int LTR ERV1 -919 4017 3282 198 0 0 0 chr15 86366862 86366884 -15013637 + (TTG)n Simple_repeat Simple_repeat 2 23 0 1897 247 39 78 chr15 86366884 86366953 -15013568 - MER31-int LTR ERV1 -1654 3282 3212 280 288 163 19 chr15 86369206 86369366 -15011155 - L2 LINE L2 -37 3276 3094 364 102 119 0 chr15 86369371 86369430 -15011091 + AluJ/FLAM SINE Alu 2 67 -235 545 296 46 70 chr15 86372106 86372451 -15008070 + L1ME4a LINE L1 5508 5844 -277 321 333 54 32 chr15 86372573 86372759 -15007762 - L1MC4a LINE L1 -1818 5990 5801 969 187 14 9 chr15 86373052 86373266 -15007255 - L1MB7 LINE L1 -317 5867 5653 414 235 86 31 chr15 86373407 86373569 -15006952 + L1ME4a LINE L1 5950 6120 -1 1780 147 7 0 chr15 86374079 86374393 -15006128 + AluSx SINE Alu 2 317 0 390 262 37 0 chr15 86374484 86374591 -15005930 - Zaphod DNA AcHobo 0 4031 3921 1943 126 0 0 chr15 86375131 86375432 -15005089 + AluY SINE Alu 1 301 -10 421 337 71 11 chr15 86375462 86375698 -15004823 - MIR SINE MIR -13 249 3 21 0 0 0 chr15 86375980 86376001 -15004520 + AT_rich Low_complexity Low_complexity 1 21 0 861 214 17 34 chr15 86376007 86376245 -15004276 - L1MC2 LINE L1 -26 6318 6085 1188 251 38 8 chr15 86376713 86377044 -15003477 + L1ME3 LINE L1 5831 6170 0 1524 155 0 7 chr15 86377103 86377374 -15003147 - AluY SINE Alu -12 299 31 229 325 225 7 chr15 86378212 86378363 -15002158 + MIR SINE MIR 3 186 -76 2355 77 0 13 chr15 86378460 86378772 -15001749 - AluY SINE Alu -1 310 3 2224 107 0 0 chr15 86379879 86380179 -15000342 - AluSx SINE Alu -4 308 9 1029 168 6 6 chr15 86380219 86380380 -15000141 + MER58A DNA MER1_type 3 163 0 418 237 46 8 chr15 86380480 86380611 -14999910 + Charlie5 DNA MER1_type 2450 2585 -27 476 182 182 0 chr15 86380620 86380717 -14999804 - MER58A DNA MER1_type -1 223 109 1855 203 82 32 chr15 86380717 86381181 -14999340 - MLT1D LTR MaLR -2 503 16 386 257 212 0 chr15 86381181 86381294 -14999227 - MER58A DNA MER1_type 0 137 1 280 156 0 0 chr15 86381414 86381459 -14999062 - MER103 DNA DNA -80 86 42 356 337 96 0 chr15 86382280 86382475 -14998046 + MIR SINE MIR 16 236 -26 212 305 17 0 chr15 86382494 86382553 -14997968 - MIR3 SINE MIR -28 180 121 741 229 32 32 chr15 86383954 86384142 -14996379 + MER5A DNA MER1_type 1 188 -1 336 287 55 55 chr15 86384592 86384794 -14995727 + L2 LINE L2 2839 3040 -273 397 336 137 26 chr15 86385588 86385814 -14994707 + MIR SINE MIR 4 254 -8 429 253 101 93 chr15 86386069 86386326 -14994195 - MIR SINE MIR -2 260 2 454 231 34 7 chr15 86386862 86386992 -14993529 - MIR SINE MIR -51 157 20 186 43 0 0 chr15 86387836 86387859 -14992662 + (CA)n Simple_repeat Simple_repeat 1 23 0 510 320 36 53 chr15 86387888 86388135 -14992386 + MIR SINE MIR 20 262 0 200 309 48 24 chr15 86389624 86389708 -14990813 + L2 LINE L2 3185 3270 -2 244 222 79 0 chr15 86389778 86389841 -14990680 + L2 LINE L2 3225 3292 -21 353 271 42 34 chr15 86389841 86389959 -14990562 + MER94 DNA DNA 13 131 -3 430 301 55 89 chr15 86390068 86390360 -14990161 - L2 LINE L2 -6 3266 2985 376 290 78 52 chr15 86391331 86391524 -14988997 - MIR SINE MIR 0 262 65 682 286 30 53 chr15 86392340 86392602 -14987919 + MIR SINE MIR 7 262 0 709 299 0 26 chr15 86392640 86392834 -14987687 - MIR SINE MIR -12 250 62 459 0 0 0 chr15 86393721 86393772 -14986749 + (TG)n Simple_repeat Simple_repeat 2 52 0 763 179 125 6 chr15 86394175 86394343 -14986178 + MER5A DNA MER1_type 1 188 -1 675 331 20 4 chr15 86395500 86395745 -14984776 - MIR SINE MIR -11 251 3 265 284 18 18 chr15 86395808 86395917 -14984604 + MIR SINE MIR 30 138 -70 242 123 53 18 chr15 86396429 86396486 -14984035 + (TG)n Simple_repeat Simple_repeat 1 59 0 656 219 25 1 chr15 86397707 86397868 -14982653 + MER33 DNA MER1_type 1 152 -88 401 0 20 0 chr15 86397868 86397917 -14982604 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 324 314 9 0 chr15 86398582 86398687 -14981834 + MIR3 SINE MIR 78 183 -25 369 0 0 0 chr15 86398727 86398768 -14981753 + (TG)n Simple_repeat Simple_repeat 1 41 0 235 321 36 36 chr15 86399647 86399784 -14980737 - L2 LINE L2 -27 3245 3109 394 165 31 10 chr15 86400094 86400191 -14980330 - LTR16C LTR ERVL -33 458 360 210 281 163 7 chr15 86401161 86401296 -14979225 + L2 LINE L2 3151 3306 -7 557 265 30 18 chr15 86401534 86401700 -14978821 - MIR SINE MIR -47 215 48 480 283 14 7 chr15 86401950 86402095 -14978426 + MIR3 SINE MIR 59 204 -4 304 57 0 38 chr15 86402230 86402283 -14978238 + (TG)n Simple_repeat Simple_repeat 2 52 0 522 172 43 9 chr15 86402304 86402420 -14978101 - MER5A DNA MER1_type -5 184 65 548 285 82 19 chr15 86403236 86403443 -14977078 - MIR SINE MIR -21 241 22 381 300 72 65 chr15 86403445 86403722 -14976799 + L1ME4a LINE L1 5695 5973 -148 2423 114 5 13 chr15 86404038 86404415 -14976106 - MLT1B LTR MaLR -2 388 15 257 247 26 0 chr15 86405177 86405254 -14975267 - L1MC4 LINE L1 -144 7898 7820 602 211 38 49 chr15 86405279 86405464 -14975057 - L1ME2 LINE L1 -10 6154 5972 659 163 163 45 chr15 86405528 86405730 -14974791 - L1PB3 LINE L1 0 6154 5929 799 129 0 43 chr15 86405775 86405914 -14974607 - FLAM_C SINE Alu 0 133 1 1574 201 94 0 chr15 86405914 86406308 -14974213 - L1ME2 LINE L1 -189 5975 5545 374 301 0 0 chr15 86406376 86406469 -14974052 - MIR SINE MIR -114 148 56 403 308 61 51 chr15 86407042 86407584 -14972937 - L2 LINE L2 -60 3253 2708 266 304 71 36 chr15 86407649 86407873 -14972648 - L2 LINE L2 -190 3082 2851 265 264 11 22 chr15 86408525 86408616 -14971905 + GA-rich Low_complexity Low_complexity 5 94 0 255 269 0 0 chr15 86409802 86409869 -14970652 + (CAATC)n Simple_repeat Simple_repeat 1 67 0 180 0 0 0 chr15 86410026 86410046 -14970475 + (GGGTG)n Simple_repeat Simple_repeat 4 23 0 207 0 0 0 chr15 86410813 86410836 -14969685 + (TG)n Simple_repeat Simple_repeat 2 24 0 25 65 0 0 chr15 86411697 86411743 -14968778 + AT_rich Low_complexity Low_complexity 1 46 0 445 275 35 14 chr15 86412097 86412239 -14968282 - MIR SINE MIR -44 218 74 215 344 155 9 chr15 86412938 86413088 -14967433 + MIR SINE MIR 37 204 -58 283 276 146 73 chr15 86413088 86413486 -14967035 - MLT1J LTR MaLR -3 508 82 200 341 142 12 chr15 86414147 86414393 -14966128 - L2 LINE L2 -907 2407 2130 1834 157 5 89 chr15 86414592 86415018 -14965503 - MLT1B LTR MaLR 0 390 1 501 232 71 26 chr15 86415392 86415547 -14964974 + MIR SINE MIR 101 262 0 458 299 49 6 chr15 86416117 86416281 -14964240 - MIR3 SINE MIR -22 186 16 348 293 56 51 chr15 86417680 86417895 -14962626 - MIR SINE MIR -17 245 30 429 302 15 50 chr15 86418529 86418722 -14961799 - MIR SINE MIR -35 227 39 369 291 58 0 chr15 86419394 86419516 -14961005 + MIR SINE MIR 57 185 -72 277 256 85 0 chr15 86419663 86419745 -14960776 + MIR SINE MIR 90 178 -84 645 246 60 12 chr15 86419864 86420031 -14960490 + MIR SINE MIR 16 190 -72 185 108 27 0 chr15 86420621 86420658 -14959863 + T-rich Low_complexity Low_complexity 2 39 0 903 114 8 23 chr15 86420663 86420794 -14959727 - AluJb SINE Alu -182 130 2 393 281 198 8 chr15 86420937 86421179 -14959342 + L1ME4a LINE L1 5833 6120 -1 453 284 17 16 chr15 86421253 86421419 -14959102 - MER5A DNA MER1_type -4 185 8 344 277 147 4 chr15 86421681 86421897 -14958624 - MIR SINE MIR -8 254 12 227 79 26 0 chr15 86422163 86422201 -14958320 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 447 306 70 0 chr15 86422361 86422560 -14957961 + MIR SINE MIR 48 260 -2 419 248 38 100 chr15 86423772 86423982 -14956539 - MIR SINE MIR -51 211 15 1670 68 0 10 chr15 86424335 86424540 -14955981 + AluY SINE Alu 91 293 -18 3934 179 45 10 chr15 86424540 86425327 -14955194 - L1MB2 LINE L1 -9 6162 5349 261 258 0 30 chr15 86426310 86426376 -14954145 + MIR SINE MIR 1 64 -198 192 255 0 39 chr15 86427256 86427307 -14953214 + MIR SINE MIR 88 136 -72 333 353 60 7 chr15 86427372 86427522 -14952999 - L2 LINE L2 -20 3252 3095 240 226 0 0 chr15 86427604 86427657 -14952864 + T-rich Low_complexity Low_complexity 1 53 0 1774 229 52 7 chr15 86427719 86428160 -14952361 + MLT1C LTR MaLR 1 461 -6 828 263 58 21 chr15 86428162 86428200 -14952321 + MIR SINE MIR 11 46 -216 2298 121 3 0 chr15 86428200 86428507 -14952014 - AluSx SINE Alu -4 308 1 828 263 58 21 chr15 86428507 86428711 -14951810 + MIR SINE MIR 46 262 0 234 0 0 0 chr15 86428783 86428809 -14951712 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 344 328 8 8 chr15 86429013 86429141 -14951380 + MIR SINE MIR 72 199 -63 540 0 0 0 chr15 86429544 86429604 -14950917 + (TG)n Simple_repeat Simple_repeat 1 60 0 2590 59 0 7 chr15 86429912 86430218 -14950303 - AluY SINE Alu -7 304 1 2351 178 64 26 chr15 86430767 86431295 -14949226 + L1MB5 LINE L1 5627 6174 0 988 253 144 26 chr15 86432391 86432857 -14947664 + LTR33A LTR ERVL 1 521 -2 224 322 89 68 chr15 86433237 86433383 -14947138 + L2 LINE L2 3116 3264 -8 635 259 35 7 chr15 86433402 86433545 -14946976 + MER5B DNA MER1_type 32 178 0 189 164 16 82 chr15 86433621 86433682 -14946839 - L2 LINE L2 -5 3267 3211 516 192 143 28 chr15 86433687 86433845 -14946676 + MER5A DNA MER1_type 4 182 -7 2734 33 0 0 chr15 86435609 86435914 -14944607 - AluY SINE Alu -6 305 1 2495 41 6 28 chr15 86435916 86436233 -14944288 - AluY SINE Alu -1 310 1 1126 203 9 0 chr15 86438658 86438875 -14941646 - MER20 DNA MER1_type 0 219 1 1993 123 0 0 chr15 86439226 86439494 -14941027 - AluSx SINE Alu -9 303 36 604 237 27 27 chr15 86440120 86440306 -14940215 - MIR SINE MIR -19 243 58 1202 197 159 0 chr15 86440333 86440597 -14939924 - MER58B DNA MER1_type 0 341 36 304 276 0 13 chr15 86442093 86442169 -14938352 - MIR3 SINE MIR -48 160 86 333 308 54 24 chr15 86442664 86442843 -14937678 - MIR SINE MIR -57 151 16 254 326 68 15 chr15 86443826 86443958 -14936563 + MIR3 SINE MIR 43 181 -27 200 205 0 0 chr15 86444798 86444837 -14935684 + GA-rich Low_complexity Low_complexity 1 39 0 198 200 0 0 chr15 86444916 86444951 -14935570 + L2 LINE L2 3267 3301 -12 360 327 99 6 chr15 86445338 86445561 -14934960 - Charlie8 DNA MER1_type -2293 124 8 335 267 17 43 chr15 86446977 86447093 -14933428 + MIR SINE MIR 131 243 -19 307 295 102 20 chr15 86447680 86447861 -14932660 - MIR SINE MIR -46 216 16 587 311 24 19 chr15 86448016 86448228 -14932293 - MIR SINE MIR -30 232 20 630 277 123 5 chr15 86449131 86449351 -14931170 + MIR SINE MIR 6 251 -11 226 185 185 0 chr15 86449401 86449455 -14931066 - MIR3 SINE MIR -6 202 139 * 1416 356 82 35 chr15 86449443 86450470 -14930051 + L2 LINE L2 2230 3306 -7 206 382 45 0 chr15 86450480 86450590 -14929931 - MIR3 SINE MIR -49 159 45 2397 106 0 0 chr15 86450725 86451026 -14929495 + AluSc SINE Alu 1 301 -8 836 263 89 5 chr15 86451269 86451493 -14929028 + MIR SINE MIR 13 255 -7 358 126 39 87 chr15 86451631 86451734 -14928787 + L1MB8 LINE L1 6044 6141 -37 225 119 0 0 chr15 86451744 86451786 -14928735 + (TC)n Simple_repeat Simple_repeat 2 43 0 609 280 15 25 chr15 86451796 86451996 -14928525 + MLT1I LTR MaLR 145 342 -67 211 252 39 97 chr15 86452860 86452963 -14927558 + MIR SINE MIR 84 180 -82 933 276 69 4 chr15 86453132 86453364 -14927157 - MIR SINE MIR -10 252 6 209 316 18 0 chr15 86453843 86453900 -14926621 + MIR3 SINE MIR 147 204 -4 187 395 58 0 chr15 86455210 86455296 -14925225 + L2 LINE L2 3123 3213 -59 428 311 96 41 chr15 86455368 86455587 -14924934 + MIR SINE MIR 20 250 -12 266 269 11 75 chr15 86456563 86456656 -14923865 + MIR SINE MIR 105 191 -71 236 208 101 151 chr15 86457273 86457432 -14923089 - L2 LINE L2 -220 3052 2902 2201 90 0 0 chr15 86457876 86458165 -14922356 + L1PA8 LINE L1 5880 6168 -4 1470 170 3 0 chr15 86458190 86458472 -14922049 - L1MA4 LINE L1 -3 6297 6015 334 284 135 14 chr15 86458472 86458620 -14921901 + MIR SINE MIR 79 244 -18 644 232 71 0 chr15 86458736 86458904 -14921617 - LTR16C LTR ERVL 0 491 312 297 234 72 18 chr15 86458977 86459088 -14921433 - LTR16C LTR ERVL -371 120 4 2908 86 5 0 chr15 86461250 86461623 -14918898 - THE1C LTR MaLR 0 375 1 188 74 37 0 chr15 86461676 86461703 -14918818 + L2 LINE L2 3268 3295 -18 381 310 93 0 chr15 86462577 86462706 -14917815 - L2 LINE L2 -3 3269 3129 194 322 0 0 chr15 86463084 86463143 -14917378 - L2 LINE L2 -214 3058 3000 456 330 122 9 chr15 86463937 86464158 -14916363 - MIR SINE MIR -6 256 11 289 111 0 0 chr15 86464859 86464904 -14915617 - MER117 DNA MER1_type -34 163 119 288 0 0 0 chr15 86464908 86464940 -14915581 + (T)n Simple_repeat Simple_repeat 1 32 0 184 353 25 25 chr15 86465182 86465304 -14915217 - L2 LINE L2 -1046 2268 2147 477 270 49 54 chr15 86466606 86466791 -14913730 - L2 LINE L2 -3 3310 3127 870 168 59 40 chr15 86466815 86467017 -14913504 - MER20 DNA MER1_type -5 214 9 2026 301 174 19 chr15 86467038 86468330 -14912191 - L2 LINE L2 -180 3092 1566 760 285 127 46 chr15 86468970 86469588 -14910933 - L2 LINE L2 -56 3257 2579 1573 144 30 0 chr15 86470588 86470824 -14909697 + AluSx SINE Alu 42 284 -28 414 0 0 0 chr15 86470825 86470871 -14909650 + (CA)n Simple_repeat Simple_repeat 2 47 0 1875 76 17 8 chr15 86472301 86472537 -14907984 + AluSx SINE Alu 11 248 -64 451 133 27 0 chr15 86472681 86472756 -14907765 - MER20 DNA MER1_type -142 77 1 380 320 54 20 chr15 86472989 86473136 -14907385 + L2 LINE L2 3121 3272 0 658 264 142 5 chr15 86473934 86474146 -14906375 + MIR SINE MIR 7 247 -15 577 164 192 79 chr15 86474497 86474640 -14905881 - MER3 DNA MER1_type 0 209 41 1880 171 0 29 chr15 86474640 86474956 -14905565 - AluJo SINE Alu -3 309 3 577 164 192 79 chr15 86474956 86474989 -14905532 - MER3 DNA MER1_type -168 41 13 662 262 52 0 chr15 86475049 86475151 -14905370 + MER5A DNA MER1_type 9 125 -64 2149 108 0 21 chr15 86475151 86475438 -14905083 - AluSx SINE Alu -20 292 12 662 262 52 0 chr15 86475438 86475507 -14905014 + MER5A DNA MER1_type 125 189 0 260 267 144 45 chr15 86476341 86476543 -14903978 - L2 LINE L2 -542 2772 2551 419 231 34 170 chr15 86476619 86476943 -14903578 + L1M4 LINE L1 2918 3200 -2946 298 284 30 52 chr15 86477200 86477334 -14903187 - MIR SINE MIR -7 255 125 214 254 0 172 chr15 86477548 86477717 -14902804 + MIR3 SINE MIR 48 187 -21 673 154 34 0 chr15 86477960 86478077 -14902444 - AluJb SINE Alu -26 286 166 429 271 129 39 chr15 86478134 86478389 -14902132 + MER115 DNA AcHobo 210 487 -206 261 277 125 18 chr15 86478780 86478892 -14901629 - L2 LINE L2 -10 3303 3180 507 253 82 106 chr15 86479341 86479720 -14900801 - L1MC4 LINE L1 0 7995 7535 3104 212 81 27 chr15 86479793 86479931 -14900590 - L1MB7 LINE L1 -1 6183 6054 757 207 58 35 chr15 86479931 86480105 -14900416 + MER45A DNA AcHobo 1 178 0 3104 212 81 27 chr15 86480105 86480796 -14899725 - L1MB7 LINE L1 -130 6054 5305 1252 140 0 0 chr15 86480798 86480976 -14899545 + AluSg/x SINE Alu 135 312 0 350 228 0 33 chr15 86480999 86481091 -14899430 - L1MB7 LINE L1 -841 5305 5217 1146 330 7 10 chr15 86481116 86481534 -14898987 - L2 LINE L2 -1038 2276 1860 371 282 51 64 chr15 86481835 86482069 -14898452 - L2 LINE L2 -1453 1861 1631 2537 80 47 39 chr15 86482313 86482674 -14897847 + THE1B LTR MaLR 1 364 0 245 295 0 0 chr15 86484224 86484285 -14896236 + MIR SINE MIR 54 114 -148 210 113 38 19 chr15 86484607 86484660 -14895861 + (CA)n Simple_repeat Simple_repeat 2 55 0 799 271 95 17 chr15 86485887 86486234 -14894287 + MLT1L LTR MaLR 237 610 -5 253 231 49 26 chr15 86486950 86487061 -14893460 - MIR SINE MIR -76 132 19 2376 84 0 13 chr15 86487843 86488153 -14892368 + AluY SINE Alu 1 306 -5 443 294 132 0 chr15 86488168 86488365 -14892156 + MIR SINE MIR 34 256 -6 468 305 152 10 chr15 86488639 86488845 -14891676 - MIR SINE MIR 0 262 31 665 189 182 0 chr15 86489046 86489205 -14891316 + MER5A DNA MER1_type 2 189 0 350 436 17 0 chr15 86489900 86490079 -14890442 - MER5A DNA MER1_type -7 182 1 238 292 0 0 chr15 86490336 86490425 -14890096 - L1MC4 LINE L1 -1339 6703 6615 207 231 0 0 chr15 86490426 86490465 -14890056 + (TA)n Simple_repeat Simple_repeat 1 39 0 256 227 23 0 chr15 86490466 86490554 -14889967 - L1MC4 LINE L1 -1339 6703 6614 208 374 46 23 chr15 86490623 86490754 -14889767 - L2 LINE L2 -3 3269 3136 181 139 47 0 chr15 86491237 86491280 -14889241 + CT-rich Low_complexity Low_complexity 2 46 0 891 233 55 16 chr15 86491766 86492019 -14888502 - MER113 DNA MER1_type? -89 432 170 * 955 194 36 129 chr15 86492014 86492370 -14888151 + MLT2D LTR ERVL 5 327 -87 273 202 42 25 chr15 86492366 86492485 -14888036 - MER113 DNA MER1_type? -354 167 47 * 697 183 160 17 chr15 86492866 86492967 -14887554 + MER3 DNA MER1_type 1 86 -123 2235 111 6 19 chr15 86492967 86493283 -14887238 - AluSp SINE Alu -1 312 1 697 183 160 17 chr15 86493283 86493356 -14887165 + MER3 DNA MER1_type 86 200 -9 248 103 103 0 chr15 86493322 86493361 -14887160 - Charlie5 DNA MER1_type -2569 43 1 * 415 234 98 73 chr15 86493454 86493659 -14886862 - MLT1J1 LTR MaLR -235 211 2 324 302 108 27 chr15 86494536 86494986 -14885535 - L2 LINE L2 -216 3056 2566 206 176 20 0 chr15 86494999 86495050 -14885471 + (TG)n Simple_repeat Simple_repeat 1 52 0 459 239 111 32 chr15 86496372 86496506 -14884015 + MIR SINE MIR 54 197 -65 439 299 10 60 chr15 86496595 86496796 -14883725 + MIR SINE MIR 48 238 -24 182 369 0 0 chr15 86496754 86496819 -14883702 - MIR SINE MIR 0 262 198 * 217 350 58 25 chr15 86496840 86496960 -14883561 - L2 LINE L2 -11 3261 3138 2224 109 6 3 chr15 86497949 86498261 -14882260 + AluSq SINE Alu 1 313 0 232 208 38 0 chr15 86498509 86498562 -14881959 - L2 LINE L2 -20 3293 3239 1380 188 35 14 chr15 86498745 86499033 -14881488 - MLT1D LTR MaLR 0 505 212 215 254 109 55 chr15 86499135 86499245 -14881276 + L3 LINE CR1 1461 1576 -1 1584 201 76 43 chr15 86499252 86499353 -14881168 + MLT1B LTR MaLR 1 97 -293 2194 39 0 0 chr15 86499353 86499611 -14880910 + AluY SINE Alu 39 296 -15 1584 201 76 43 chr15 86499611 86499878 -14880643 + MLT1B LTR MaLR 97 381 -9 366 296 17 26 chr15 86500341 86500456 -14880065 + MER117 DNA MER1_type 82 195 -2 297 0 0 0 chr15 86500949 86500982 -14879539 + (TG)n Simple_repeat Simple_repeat 2 34 0 201 39 0 0 chr15 86501368 86501394 -14879127 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 216 216 0 0 chr15 86502164 86502215 -14878306 + GA-rich Low_complexity Low_complexity 3 53 0 200 337 48 12 chr15 86502219 86502302 -14878219 - MIR SINE MIR -17 245 160 1834 136 73 0 chr15 86502636 86502923 -14877598 + AluSg SINE Alu 3 310 0 1542 144 40 4 chr15 86504016 86504293 -14876228 + L1MB3 LINE L1 5846 6132 -51 786 126 55 0 chr15 86504324 86504451 -14876070 + L1MB3 LINE L1 6050 6183 0 180 0 0 0 chr15 86504636 86504656 -14875865 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1091 235 137 74 chr15 86505158 86505685 -14874836 - MLT1K LTR MaLR -10 578 19 409 371 17 6 chr15 86507103 86507278 -14873243 + MIR SINE MIR 25 201 -61 255 286 0 0 chr15 86507276 86507339 -14873182 - L2 LINE L2 0 3313 3251 * 546 16 0 0 chr15 86507830 86507893 -14872628 + (CA)n Simple_repeat Simple_repeat 1 63 0 383 286 6 0 chr15 86508766 86508944 -14871577 + (TG)n Simple_repeat Simple_repeat 1 179 0 255 244 0 0 chr15 86508956 86509034 -14871487 + (TG)n Simple_repeat Simple_repeat 1 78 0 439 263 62 67 chr15 86509708 86509851 -14870670 + MIR SINE MIR 64 207 -55 1604 170 0 34 chr15 86509851 86510145 -14870376 + AluJb SINE Alu 12 295 -17 439 263 62 67 chr15 86510145 86510195 -14870326 + MIR SINE MIR 207 256 -6 779 138 331 0 chr15 86510430 86510590 -14869931 - MER20 DNA MER1_type -4 215 3 251 343 145 25 chr15 86510630 86510954 -14869567 + L2 LINE L2 2933 3295 -18 182 208 19 0 chr15 86510990 86511043 -14869478 + (TGGA)n Simple_repeat Simple_repeat 4 57 0 344 360 0 7 chr15 86511077 86511216 -14869305 + (TGGA)n Simple_repeat Simple_repeat 4 141 0 236 259 12 0 chr15 86511219 86511300 -14869221 + (TGGG)n Simple_repeat Simple_repeat 3 84 0 320 289 0 6 chr15 86511353 86511512 -14869009 + (TGGA)n Simple_repeat Simple_repeat 4 161 0 195 286 0 0 chr15 86511978 86512020 -14868501 + L2 LINE L2 3214 3255 -17 263 333 20 10 chr15 86513673 86513772 -14866749 - MIR3 SINE MIR -12 196 97 1802 169 33 9 chr15 86516348 86516680 -14863841 + L1MB8 LINE L1 5838 6177 -1 1356 229 167 21 chr15 86517103 86517492 -14863029 - MLT1G3 LTR MaLR 0 530 85 523 196 47 0 chr15 86517492 86517599 -14862922 - MLT1G3 LTR MaLR -483 112 1 1099 190 13 44 chr15 86518387 86518613 -14861908 + MER20 DNA MER1_type 1 219 0 272 269 34 34 chr15 86519334 86519453 -14861068 + GA-rich Low_complexity Low_complexity 3 121 0 772 228 6 28 chr15 86520553 86520733 -14859788 + MER3 DNA MER1_type 1 129 -80 917 165 6 0 chr15 86520742 86520900 -14859621 + MER5A DNA MER1_type 30 188 -1 495 247 152 0 chr15 86521395 86521553 -14858968 - MIR SINE MIR -5 257 76 459 243 103 22 chr15 86522892 86523028 -14857493 + L2 LINE L2 3126 3272 0 180 333 0 0 chr15 86523233 86523278 -14857243 - L2 LINE L2 -5 3267 3223 426 283 249 14 chr15 86523655 86524001 -14856520 + L3 LINE CR1 677 1103 -474 284 293 53 23 chr15 86524112 86524245 -14856276 + L3 LINE CR1 1097 1233 -344 259 191 0 0 chr15 86524711 86524758 -14855763 + MIR SINE MIR 78 124 -84 498 248 9 0 chr15 86525172 86525285 -14855236 + MER81 DNA DNA 1 114 0 294 300 108 23 chr15 86526934 86527064 -14853457 + MIR SINE MIR 15 155 -107 265 311 0 11 chr15 86527846 86527936 -14852585 - MIR3 SINE MIR -6 202 114 227 226 65 0 chr15 86528013 86528075 -14852446 + (TGAA)n Simple_repeat Simple_repeat 3 68 0 2297 109 0 0 chr15 86528121 86528433 -14852088 + AluSx SINE Alu 1 312 0 1154 99 0 6 chr15 86529453 86529634 -14850887 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 264 154 0 0 chr15 86529635 86529687 -14850834 + CT-rich Low_complexity Low_complexity 4 55 0 1237 68 11 6 chr15 86529688 86529865 -14850656 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 240 322 119 56 chr15 86529872 86530015 -14850506 + MIR3 SINE MIR 10 161 -47 473 225 168 42 chr15 86531499 86531690 -14848831 + MIR SINE MIR 47 261 -1 353 301 36 14 chr15 86532911 86533101 -14847420 - MIR SINE MIR -29 233 41 214 276 0 26 chr15 86533363 86533439 -14847082 - MIR SINE MIR -109 153 80 230 310 28 42 chr15 86534046 86534188 -14846333 - L2 LINE L2 0 3313 3174 358 322 35 0 chr15 86534243 86534358 -14846163 - L2 LINE L2 -3 3310 3192 417 250 189 0 chr15 86535421 86535569 -14844952 - MIR SINE MIR -24 238 63 453 300 136 34 chr15 86535676 86535999 -14844522 + L3 LINE CR1 1108 1463 -114 443 245 0 0 chr15 86537662 86537760 -14842761 - MER5A DNA MER1_type -83 106 9 217 243 10 14 chr15 86537768 86537841 -14842680 - MIR3 SINE MIR -48 160 86 1489 100 23 14 chr15 86537883 86538103 -14842418 - L1PA12 LINE L1 0 6168 5947 309 51 0 0 chr15 86538361 86538400 -14842121 + (TC)n Simple_repeat Simple_repeat 1 39 0 192 77 0 0 chr15 86540235 86540261 -14840260 + (TGGG)n Simple_repeat Simple_repeat 1 26 0 218 207 0 35 chr15 86540261 86540319 -14840202 + G-rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr15 86540342 86540363 -14840158 + GC_rich Low_complexity Low_complexity 1 21 0 288 77 0 0 chr15 86540376 86540415 -14840106 + (GGGA)n Simple_repeat Simple_repeat 3 41 0 213 173 39 0 chr15 86540556 86540608 -14839913 + (TG)n Simple_repeat Simple_repeat 2 55 0 234 0 0 0 chr15 86540833 86540859 -14839662 + (CGG)n Simple_repeat Simple_repeat 1 26 0 351 250 10 20 chr15 86540923 86541023 -14839498 + C-rich Low_complexity Low_complexity 6 104 0 25 90 0 0 chr15 86541355 86541422 -14839099 + GC_rich Low_complexity Low_complexity 1 67 0 195 129 0 0 chr15 86541696 86541727 -14838794 + (CGG)n Simple_repeat Simple_repeat 2 32 0 226 277 15 0 chr15 86543741 86543806 -14836715 - MIR SINE MIR -115 147 82 199 304 165 19 chr15 86545703 86545861 -14834660 + MIR3 SINE MIR 10 190 -18 258 276 82 0 chr15 86547581 86547679 -14832842 - MIR3 SINE MIR -15 193 88 318 297 79 0 chr15 86548164 86548265 -14832256 + MIR SINE MIR 59 167 -95 793 281 5 5 chr15 86548365 86548564 -14831957 - MIR SINE MIR 0 262 64 246 174 0 0 chr15 86548629 86548675 -14831846 + (CA)n Simple_repeat Simple_repeat 1 46 0 427 302 35 23 chr15 86549714 86549886 -14830635 - MIR3 SINE MIR -8 200 27 342 288 120 0 chr15 86551001 86551126 -14829395 + MIR SINE MIR 53 192 -70 593 266 73 6 chr15 86551363 86551540 -14828981 + MIR SINE MIR 4 192 -70 341 303 30 38 chr15 86552374 86552506 -14828015 + MIR SINE MIR 14 144 -118 1876 179 31 21 chr15 86553112 86553445 -14827076 - MLT1B LTR MaLR 0 390 51 2333 105 3 10 chr15 86553445 86553759 -14826762 - AluSq SINE Alu -1 312 1 1876 179 31 21 chr15 86553759 86553811 -14826710 - MLT1B LTR MaLR -339 51 1 981 280 212 22 chr15 86556666 86557331 -14823190 + L2 LINE L2 2248 3054 -259 444 37 0 0 chr15 86558223 86558277 -14822244 + (GAA)n Simple_repeat Simple_repeat 1 54 0 534 283 53 45 chr15 86558746 86558993 -14821528 - MIR SINE MIR -1 261 13 546 264 28 71 chr15 86559628 86559840 -14820681 - MIR SINE MIR -7 255 53 430 329 24 12 chr15 86560992 86561156 -14819365 - MIR SINE MIR -38 224 59 202 279 36 54 chr15 86562139 86562250 -14818271 - MIR SINE MIR -59 203 95 1438 219 47 54 chr15 86562250 86562530 -14817991 - MLT1C LTR MaLR 0 467 190 2135 128 6 26 chr15 86562530 86562842 -14817679 - AluSx SINE Alu -1 311 6 1438 219 47 54 chr15 86562842 86563026 -14817495 - MLT1C LTR MaLR -277 190 6 1073 213 13 4 chr15 86564947 86565172 -14815349 + Charlie1 DNA MER1_type 1 227 -2534 638 168 22 22 chr15 86565168 86565305 -14815216 + Charlie1 DNA MER1_type 2622 2758 -3 * 517 328 36 26 chr15 86565309 86565501 -14815020 - MER91A DNA MER1_type -2 194 1 208 277 84 24 chr15 86565883 86565966 -14814555 + L2 LINE L2 3156 3243 -29 196 398 10 10 chr15 86565974 86566077 -14814444 + MIR SINE MIR 21 123 -139 413 312 48 0 chr15 86566640 86566765 -14813756 + L2 LINE L2 3141 3271 -1 557 211 55 55 chr15 86566887 86567086 -14813435 - L2 LINE L2 -36 3277 3079 736 211 122 88 chr15 86567105 86567355 -14813166 - L2 LINE L2 -338 2976 2713 2335 79 0 23 chr15 86567355 86567659 -14812862 - AluY SINE Alu -14 297 1 736 211 122 88 chr15 86567659 86567702 -14812819 - L2 LINE L2 -601 2713 2673 2478 87 0 0 chr15 86567711 86568010 -14812511 - AluSc SINE Alu -10 299 1 519 288 41 7 chr15 86568680 86568826 -14811695 + MER5A DNA MER1_type 2 152 -37 302 301 49 35 chr15 86568717 86568860 -14811661 - MER5A DNA MER1_type -27 162 18 * 365 329 0 45 chr15 86569440 86569595 -14810926 + MIR SINE MIR 67 214 -48 186 155 42 127 chr15 86570802 86570873 -14809648 - L3 LINE CR1 0 1577 1513 205 324 0 14 chr15 86571171 86571245 -14809276 + MIR SINE MIR 8 80 -182 449 311 46 13 chr15 86571320 86571471 -14809050 + MIR SINE MIR 107 262 0 313 329 0 0 chr15 86571588 86571670 -14808851 + MIR SINE MIR 34 115 -147 252 86 0 0 chr15 86572453 86572488 -14808033 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 655 188 9 0 chr15 86572560 86572672 -14807849 + MER5A DNA MER1_type 26 138 -51 4292 223 38 18 chr15 86572680 86573552 -14806969 - L1MD1 LINE L1 0 7808 6955 2201 165 13 20 chr15 86573552 86573945 -14806576 - MLT1B LTR MaLR 0 390 1 4292 223 38 18 chr15 86573945 86574193 -14806328 - L1MD1 LINE L1 -853 6955 6081 570 319 108 4 chr15 86574222 86574454 -14806067 + MIR SINE MIR 7 262 0 915 174 0 0 chr15 86578616 86578765 -14801756 + AluJb SINE Alu 157 305 -7 3091 118 63 7 chr15 86579659 86580242 -14800279 + MER4B LTR ERV1 1 779 0 457 250 52 7 chr15 86580406 86580542 -14799979 + MIR SINE MIR 46 187 -75 22 0 0 0 chr15 86580879 86580901 -14799620 + AT_rich Low_complexity Low_complexity 1 22 0 314 261 15 69 chr15 86581075 86581205 -14799316 - L1ME4a LINE L1 -44 6077 5955 246 160 0 0 chr15 86581489 86581539 -14798982 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 261 142 28 3 chr15 86582295 86582347 -14798174 - MIR SINE MIR -68 140 95 539 229 33 0 chr15 86582768 86582890 -14797631 - MIR3 SINE MIR -5 203 78 545 194 236 14 chr15 86586056 86586200 -14794321 - MER45A DNA AcHobo -2 176 1 235 184 0 0 chr15 86586376 86586414 -14794107 - L2 LINE L2 -11 3302 3265 * 440 239 227 0 chr15 86586381 86586544 -14793977 - MIR SINE MIR -10 252 53 510 240 136 0 chr15 86586563 86586717 -14793804 + MER5B DNA MER1_type 4 178 0 367 244 106 67 chr15 86586746 86586926 -14793595 + MER5A DNA MER1_type 1 187 -2 378 244 211 51 chr15 86586966 86587122 -14793399 - MER5A DNA MER1_type 0 189 9 1053 104 0 0 chr15 86587302 86587437 -14793084 - AluSq/x SINE Alu -178 135 1 557 304 38 61 chr15 86588555 86588900 -14791621 + L1ME4a LINE L1 5508 5844 -277 323 295 14 14 chr15 86589069 86589208 -14791313 - L1MC4a LINE L1 -1869 5939 5801 397 260 50 29 chr15 86589210 86589482 -14791039 + HAL1b LINE L1 1232 1329 -19 344 316 68 15 chr15 86589731 86589864 -14790657 + MER5A DNA MER1_type 50 189 0 1321 176 9 5 chr15 86589871 86590092 -14790429 - MER58A DNA MER1_type 0 224 3 2443 107 0 0 chr15 86590124 86590432 -14790089 + AluSx SINE Alu 1 308 -4 2579 70 0 13 chr15 86591534 86591848 -14788673 + AluY SINE Alu 1 310 -1 239 280 27 27 chr15 86591945 86592020 -14788501 - MIR SINE MIR -76 186 112 662 324 23 5 chr15 86593616 86593832 -14786689 + MIR SINE MIR 32 251 -11 526 325 6 6 chr15 86593904 86594070 -14786451 + MER5B DNA MER1_type 3 168 -10 194 374 104 0 chr15 86594192 86594355 -14786166 - MIR SINE MIR -14 248 69 428 277 162 7 chr15 86594827 86594975 -14785546 - MER5A DNA MER1_type -6 183 13 383 257 138 20 chr15 86595058 86595210 -14785311 + MIR3 SINE MIR 34 203 -5 1853 182 3 0 chr15 86596287 86596578 -14783943 - AluJo SINE Alu -20 292 1 424 274 134 30 chr15 86596591 86596755 -14783766 - L1ME4a LINE L1 -12 6109 5929 2349 89 3 10 chr15 86596786 86597089 -14783432 - AluSg SINE Alu -9 301 1 433 333 81 9 chr15 86597741 86597963 -14782558 + MIR SINE MIR 13 250 -12 373 290 35 41 chr15 86598209 86598378 -14782143 + MIR3 SINE MIR 38 205 -3 1955 158 51 0 chr15 86600297 86600633 -14779888 - MLT2C1 LTR ERVL -41 356 4 287 260 70 20 chr15 86600634 86600734 -14779787 + MIR SINE MIR 100 204 -58 1483 147 29 11 chr15 86601076 86601348 -14779173 - L1MA4 LINE L1 0 6300 6024 7700 28 0 0 chr15 86601713 86603014 -14777507 - L1PA4 LINE L1 -3 6152 4850 385 263 91 75 chr15 86603945 86604160 -14776361 - MIR3 SINE MIR -44 218 4 364 209 0 81 chr15 86604726 86604812 -14775709 + MER96B DNA MER1_type? 7 85 -332 490 204 9 9 chr15 86604830 86604938 -14775583 + MER96B DNA MER1_type? 282 389 -28 180 292 62 46 chr15 86605490 86605555 -14774966 - L3 LINE CR1 -1191 386 321 599 275 99 18 chr15 86605833 86606309 -14774212 - L1ME4a LINE L1 -68 6053 5501 739 178 26 0 chr15 86606484 86606636 -14773885 - Charlie5 DNA MER1_type 0 2624 2469 374 212 0 0 chr15 86606638 86606704 -14773817 - Charlie5 DNA MER1_type -2546 66 1 1134 278 27 42 chr15 86606784 86607191 -14773330 - LTR16C LTR ERVL -2 489 89 608 227 97 0 chr15 86607813 86607967 -14772554 + L1MD2 LINE L1 6167 6335 -24 2719 22 0 9 chr15 86609233 86609554 -14770967 - AluYb8 SINE Alu 0 318 1 261 281 128 37 chr15 86609704 86609868 -14770653 + MIR SINE MIR 26 204 -58 269 274 316 12 chr15 86610163 86610331 -14770190 + MIR SINE MIR 34 252 -10 214 271 0 0 chr15 86610404 86610452 -14770069 + CT-rich Low_complexity Low_complexity 4 51 0 213 65 0 0 chr15 86610651 86610682 -14769839 + (A)n Simple_repeat Simple_repeat 1 31 0 1674 208 74 37 chr15 86610714 86611176 -14769345 + MLT1D LTR MaLR 27 505 0 231 238 138 0 chr15 86611507 86611587 -14768934 + MER117 DNA MER1_type 3 93 -104 287 273 15 0 chr15 86611990 86612056 -14768465 - MER117 DNA MER1_type -7 190 124 251 175 0 0 chr15 86612065 86612105 -14768416 - MER117 DNA MER1_type -34 163 124 226 167 0 0 chr15 86612114 86612150 -14768371 - MER117 DNA MER1_type -34 163 128 * 377 269 67 34 chr15 86612132 86612281 -14768240 - MER117 DNA MER1_type -5 192 39 278 218 0 0 chr15 86612393 86612448 -14768073 - MER117 DNA MER1_type -142 55 1 228 163 0 0 chr15 86613310 86613353 -14767168 + CT-rich Low_complexity Low_complexity 1 43 0 1178 256 93 40 chr15 86613353 86613998 -14766523 - L2 LINE L2 -1 3312 2637 911 272 50 9 chr15 86614145 86614465 -14766056 - L1ME4a LINE L1 -225 5896 5564 263 266 21 21 chr15 86614471 86614565 -14765956 - MIR SINE MIR -137 125 32 531 317 33 11 chr15 86614735 86614915 -14765606 - MIR SINE MIR -29 233 50 219 259 24 24 chr15 86615189 86615274 -14765247 + (TTA)n Simple_repeat Simple_repeat 2 86 0 529 223 10 0 chr15 86615501 86615616 -14764905 - MIR SINE MIR -63 145 69 263 213 13 133 chr15 86615618 86615681 -14764840 - L1MA10 LINE L1 -2 6332 6296 1758 148 3 10 chr15 86615681 86615972 -14764549 - AluSx SINE Alu -23 289 1 263 213 13 133 chr15 86615972 86616058 -14764463 - L1MA10 LINE L1 -38 6296 6201 237 271 35 24 chr15 86616724 86616809 -14763712 - MIR SINE MIR -118 144 59 785 250 6 0 chr15 86616969 86617137 -14763384 - MER5B DNA MER1_type -1 177 9 1273 197 48 19 chr15 86617151 86617466 -14763055 - MER33 DNA MER1_type 0 324 1 192 328 219 0 chr15 86617792 86617920 -14762601 + L2 LINE L2 3117 3272 0 438 237 93 95 chr15 86618062 86618441 -14762080 - MLT1H LTR MaLR 0 549 102 1967 113 3 27 chr15 86620217 86620517 -14760004 + AluSq SINE Alu 1 293 -20 1348 235 38 5 chr15 86621054 86621384 -14759137 + L1ME3 LINE L1 5831 6170 0 2069 74 0 7 chr15 86621443 86621714 -14758807 - AluY SINE Alu -12 299 31 1719 271 62 26 chr15 86623202 86623926 -14756595 + L1ME4a LINE L1 5316 6065 -56 702 260 148 65 chr15 86624457 86625056 -14755465 + L2 LINE L2 2436 3130 -183 2074 104 23 13 chr15 86625056 86625365 -14755156 - AluSx SINE Alu 0 312 1 702 260 148 65 chr15 86625365 86625512 -14755009 + L2 LINE L2 3130 3263 -50 1869 133 10 7 chr15 86626627 86626928 -14753593 - AluSx SINE Alu -10 302 1 290 284 55 37 chr15 86627109 86627218 -14753303 + L2 LINE L2 3161 3271 -1 2623 113 3 3 chr15 86627331 86627695 -14752826 + THE1B LTR MaLR 1 364 0 520 279 152 12 chr15 86627764 86627929 -14752592 - MIR SINE MIR -19 243 56 191 35 0 35 chr15 86628110 86628139 -14752382 + (CAA)n Simple_repeat Simple_repeat 3 30 0 358 281 65 39 chr15 86628774 86628927 -14751594 - MIR SINE MIR -33 229 73 803 206 32 0 chr15 86629269 86629424 -14751097 - MER3 DNA MER1_type 0 209 50 310 353 123 12 chr15 86629506 86629676 -14750845 + MIR SINE MIR 67 255 -7 209 98 73 0 chr15 86629814 86629855 -14750666 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 608 290 16 0 chr15 86630228 86630411 -14750110 - MER5A DNA MER1_type -3 186 1 853 225 16 16 chr15 86630441 86630623 -14749898 - MER5A DNA MER1_type -5 184 3 326 273 127 0 chr15 86630704 86630814 -14749707 + MIR SINE MIR 103 226 -36 2169 97 3 3 chr15 86631436 86631735 -14748786 + AluSg SINE Alu 1 299 -11 433 299 81 11 chr15 86632020 86632194 -14748327 + MIR SINE MIR 71 256 -6 1919 127 3 0 chr15 86635277 86635590 -14744931 - AluSx SINE Alu 0 314 1 426 271 211 6 chr15 86635845 86636011 -14744510 - MIR SINE MIR -15 247 48 238 328 52 26 chr15 86638704 86638820 -14741701 - L2 LINE L2 -1 3271 3153 327 330 140 6 chr15 86639097 86639276 -14741245 + MIR SINE MIR 5 207 -55 1349 244 83 28 chr15 86639399 86639821 -14740700 - MLT1C LTR MaLR -1 466 22 222 309 72 41 chr15 86639971 86640068 -14740453 - L2 LINE L2 -1 3312 3213 288 282 181 40 chr15 86640512 86640661 -14739860 - MIR SINE MIR -4 258 89 1087 272 124 18 chr15 86640985 86641379 -14739142 - MLT1J LTR MaLR -6 505 70 1518 173 102 34 chr15 86641496 86641819 -14738702 + MER2 DNA MER2_type 1 345 0 296 304 92 7 chr15 86641821 86641968 -14738553 - MIR SINE MIR -61 147 3 593 314 45 50 chr15 86642929 86643336 -14737185 + L2 LINE L2 2579 2986 -327 1956 122 30 10 chr15 86643336 86643632 -14736889 - AluSx SINE Alu -10 302 1 593 314 45 50 chr15 86643632 86643703 -14736818 + L2 LINE L2 2986 3056 -257 1644 166 102 15 chr15 86643706 86644031 -14736490 - MLT1B LTR MaLR -37 353 1 330 45 0 0 chr15 86644659 86644703 -14735818 + (TG)n Simple_repeat Simple_repeat 1 44 0 192 97 0 0 chr15 86644888 86644919 -14735602 + (CAT)n Simple_repeat Simple_repeat 1 31 0 687 270 59 20 chr15 86645334 86645538 -14734983 - MIR SINE MIR -48 214 3 2140 114 0 3 chr15 86646218 86646526 -14733995 - AluSx SINE Alu -5 307 1 2600 29 3 0 chr15 86646542 86646852 -14733669 - AluY SINE Alu 0 311 1 252 0 0 0 chr15 86647537 86647565 -14732956 + (TA)n Simple_repeat Simple_repeat 2 29 0 188 282 61 92 chr15 86648025 86648188 -14732333 + MIR SINE MIR 57 214 -48 200 111 28 0 chr15 86648217 86648253 -14732268 + (ATG)n Simple_repeat Simple_repeat 1 37 0 570 263 54 54 chr15 86648697 86648956 -14731565 + MIR SINE MIR 4 262 0 201 147 0 0 chr15 86648956 86648990 -14731531 + (CAT)n Simple_repeat Simple_repeat 2 35 0 789 202 0 67 chr15 86649956 86650149 -14730372 - MIR SINE MIR -2 260 81 540 279 113 31 chr15 86650479 86650701 -14729820 + L2 LINE L2 3059 3298 -15 384 241 13 0 chr15 86650737 86650816 -14729705 - MIR SINE MIR -110 152 73 277 318 23 2 chr15 86651300 86651408 -14729113 + MIR SINE MIR 21 130 -78 455 267 114 23 chr15 86652029 86652205 -14728316 - MIR SINE MIR -5 257 66 479 316 89 36 chr15 86652846 86653093 -14727428 + MIR SINE MIR 3 262 0 392 43 0 0 chr15 86653207 86653254 -14727267 + (CA)n Simple_repeat Simple_repeat 1 47 0 250 203 30 150 chr15 86654788 86654921 -14725600 - MIR SINE MIR -69 139 23 385 213 50 0 chr15 86655937 86656017 -14724504 + MER94 DNA DNA 50 133 -1 1656 188 29 81 chr15 86657699 86658182 -14722339 + MLT1C LTR MaLR 1 458 -9 2367 81 0 3 chr15 86659180 86659489 -14721032 + AluY SINE Alu 1 308 -3 305 276 118 39 chr15 86659492 86659645 -14720876 + MIR SINE MIR 45 223 -39 548 259 100 14 chr15 86660820 86661001 -14719520 + MIR SINE MIR 4 196 -66 180 179 128 94 chr15 86661313 86661430 -14719091 - MIR3 SINE MIR -86 122 2 216 0 0 0 chr15 86661892 86661916 -14718605 + (T)n Simple_repeat Simple_repeat 1 24 0 577 274 94 55 chr15 86662010 86662372 -14718149 - MLT1I LTR MaLR -33 376 1 444 305 112 13 chr15 86662711 86662944 -14717577 + MIR SINE MIR 7 262 0 5031 41 2 0 chr15 86663517 86664107 -14716414 + LTR10C LTR ERV1 1 591 0 462 49 0 0 chr15 86664563 86664624 -14715897 + (TG)n Simple_repeat Simple_repeat 2 62 0 229 246 0 18 chr15 86664916 86664973 -14715548 + MER20 DNA MER1_type 1 56 -163 941 163 13 0 chr15 86665029 86665182 -14715339 - L1MC1 LINE L1 -8 6325 6171 658 271 140 19 chr15 86665750 86665957 -14714564 + MIR SINE MIR 16 247 -15 516 313 84 27 chr15 86665982 86666160 -14714361 + L2 LINE L2 1818 1984 -1330 1826 134 3 3 chr15 86666160 86666463 -14714058 - AluSx SINE Alu 0 303 1 516 313 84 27 chr15 86666463 86666651 -14713870 + L2 LINE L2 1984 2206 -1108 1863 274 72 50 chr15 86667163 86667531 -14712990 - HAL1 LINE L1 -748 1759 1401 180 111 0 0 chr15 86667531 86667558 -14712963 + (TG)n Simple_repeat Simple_repeat 1 27 0 1863 274 72 50 chr15 86667558 86668293 -14712228 - HAL1 LINE L1 -1106 1401 631 301 261 25 151 chr15 86668623 86668822 -14711699 - HAL1 LINE L1 -2330 177 4 617 257 21 7 chr15 86669700 86669844 -14710677 + MER5B DNA MER1_type 1 146 -32 2006 133 0 10 chr15 86670132 86670433 -14710088 + AluSx SINE Alu 1 298 -14 405 176 22 22 chr15 86670433 86670524 -14709997 + L1 LINE L1 5201 5291 -855 360 0 0 0 chr15 86670526 86670566 -14709955 + (TA)n Simple_repeat Simple_repeat 1 40 0 2279 223 20 4 chr15 86672441 86672898 -14707623 + MER82 DNA MER2_type 1 464 -189 22 35 0 0 chr15 86672950 86672979 -14707542 + AT_rich Low_complexity Low_complexity 1 29 0 808 254 39 0 chr15 86672981 86673162 -14707359 + MER82 DNA MER2_type 460 647 -6 247 197 98 0 chr15 86674372 86674433 -14706088 - MIR3 SINE MIR -11 197 131 349 313 80 0 chr15 86675383 86675495 -14705026 - L2 LINE L2 -1 3271 3151 2414 60 0 0 chr15 86676061 86676362 -14704159 + AluY SINE Alu 1 301 -10 539 299 80 7 chr15 86676417 86676628 -14703893 - MIR SINE MIR -37 225 3 21 0 0 0 chr15 86676909 86676930 -14703591 + AT_rich Low_complexity Low_complexity 1 21 0 2579 155 26 18 chr15 86676936 86677427 -14703094 - L1MC2 LINE L1 -26 6318 5824 2144 92 0 0 chr15 86677427 86677753 -14702768 - AluY SINE Alu 0 326 1 625 165 9 0 chr15 86677767 86677876 -14702645 - AluSc SINE Alu -11 298 189 1151 201 46 23 chr15 86677876 86677953 -14702568 - L1MC2 LINE L1 -521 5823 5749 1610 201 134 19 chr15 86677953 86678372 -14702149 - MLT1C LTR MaLR 0 467 1 1151 201 46 23 chr15 86678372 86678557 -14701964 - L1MC2 LINE L1 -595 5749 5555 191 36 36 0 chr15 86678667 86678695 -14701826 + (TG)n Simple_repeat Simple_repeat 1 29 0 339 221 0 26 chr15 86679274 86679351 -14701170 - L2 LINE L2 -1 3271 3197 392 240 100 0 chr15 86682154 86682304 -14698217 + MER103 DNA DNA 1 165 -1 239 378 11 0 chr15 86682968 86683058 -14697463 + MIR SINE MIR 34 124 -84 975 268 123 44 chr15 86683838 86684405 -14696116 - MLT1L LTR MaLR 0 588 2 195 256 0 0 chr15 86684849 86684888 -14695633 - MIR SINE MIR -7 255 217 706 251 19 47 chr15 86684905 86685120 -14695401 - MIR SINE MIR 0 262 54 427 283 42 24 chr15 86685141 86685307 -14695214 - MIR SINE MIR -55 207 39 207 0 0 0 chr15 86686762 86686785 -14693736 + (T)n Simple_repeat Simple_repeat 1 23 0 464 256 103 36 chr15 86687529 86687830 -14692691 - L1ME4a LINE L1 -1 6120 5800 250 302 10 42 chr15 86689258 86689354 -14691167 - MIR3 SINE MIR -3 205 113 844 175 9 21 chr15 86689796 86690022 -14690499 - AluJb SINE Alu -28 284 1 1083 203 0 0 chr15 86690776 86690963 -14689558 + MER5A DNA MER1_type 1 187 -2 297 302 81 0 chr15 86691063 86691149 -14689372 - L2 LINE L2 0 3313 3221 299 350 8 8 chr15 86691711 86691828 -14688693 + MIR SINE MIR 109 225 -37 246 32 0 0 chr15 86692973 86693004 -14687517 + (TG)n Simple_repeat Simple_repeat 2 32 0 799 312 11 70 chr15 86694083 86694439 -14686082 + MER102b DNA MER1_type 4 338 -3 186 245 20 20 chr15 86695194 86695243 -14685278 - MER5B DNA MER1_type -24 154 106 407 226 11 0 chr15 86695370 86695463 -14685058 - MIR SINE MIR -68 140 47 522 221 89 38 chr15 86695848 86696006 -14684515 - MIR3 SINE MIR -7 201 36 417 328 59 21 chr15 86696203 86696389 -14684132 - L3 LINE CR1 -87 1490 1298 437 316 83 23 chr15 86696392 86696610 -14683911 + MIR SINE MIR 1 231 -31 285 297 58 13 chr15 86697714 86697869 -14682652 - MER103 DNA DNA -1 165 4 522 259 93 12 chr15 86698658 86698820 -14681701 + MIR SINE MIR 31 205 -57 822 301 21 8 chr15 86700100 86700339 -14680182 + MIR SINE MIR 2 243 -19 234 0 0 0 chr15 86702184 86702210 -14678311 + (A)n Simple_repeat Simple_repeat 1 26 0 227 250 48 24 chr15 86702235 86702319 -14678202 - L3 LINE CR1 -73 1504 1419 4054 189 64 6 chr15 86702410 86703976 -14676545 + L1MB7 LINE L1 4518 6168 -16 1158 168 21 0 chr15 86706156 86706346 -14674175 + MER20 DNA MER1_type 1 194 -25 196 264 42 28 chr15 86706428 86706500 -14674021 - MIR SINE MIR -113 149 77 240 253 101 20 chr15 86707207 86707306 -14673215 - MIR SINE MIR -108 154 48 1911 159 39 18 chr15 86708034 86708105 -14672416 + MER58B DNA MER1_type 1 69 -2351 261 0 0 0 chr15 86708105 86708134 -14672387 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2311 92 0 0 chr15 86708136 86708418 -14672103 - AluSx SINE Alu -30 282 1 1911 159 39 18 chr15 86708418 86708677 -14671844 + MER58B DNA MER1_type 69 341 0 292 243 19 19 chr15 86709394 86709497 -14671024 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 2090 181 65 11 chr15 86709704 86710147 -14670374 - MLT1C LTR MaLR 0 467 1 572 317 21 16 chr15 86711563 86711806 -14668715 + MIR SINE MIR 16 259 -3 294 274 65 39 chr15 86712404 86712557 -14667964 - MIR SINE MIR -21 241 85 436 299 156 0 chr15 86712975 86713129 -14667392 - MER5A DNA MER1_type 0 189 12 1407 146 0 0 chr15 86714475 86714674 -14665847 + AluSx SINE Alu 3 201 -111 5397 44 2 0 chr15 86714722 86715359 -14665162 - L1PA5 LINE L1 -7 6147 5510 639 143 19 0 chr15 86715361 86715466 -14665055 + AluSx SINE Alu 200 306 -6 382 276 101 35 chr15 86715493 86715721 -14664800 + L1ME3A LINE L1 4082 4324 -1822 2739 216 91 6 chr15 86715783 86716453 -14664068 - L1MC3 LINE L1 -1 7784 7058 395 129 6 6 chr15 86716478 86716568 -14663953 - AluS SINE Alu -18 284 229 207 0 0 0 chr15 86716831 86716854 -14663667 + (CA)n Simple_repeat Simple_repeat 2 24 0 389 241 122 33 chr15 86716916 86717159 -14663362 + L1ME3A LINE L1 5318 5587 -575 384 240 233 7 chr15 86717212 86717358 -14663163 - MER5A DNA MER1_type -2 187 9 1043 211 31 31 chr15 86717375 86717598 -14662923 + MER58A DNA MER1_type 2 224 0 364 328 73 5 chr15 86717603 86717795 -14662726 + L1ME3A LINE L1 5654 5858 -312 771 263 28 99 chr15 86719430 86719784 -14660737 - MER102b DNA MER1_type -10 331 3 303 279 71 56 chr15 86720664 86720861 -14659660 + MIR SINE MIR 4 203 -59 555 218 15 15 chr15 86723029 86723162 -14657359 - MIR3 SINE MIR -1 207 75 363 264 0 11 chr15 86723816 86724076 -14656445 + (CA)n Simple_repeat Simple_repeat 1 257 0 183 188 0 0 chr15 86724864 86724912 -14655609 + T-rich Low_complexity Low_complexity 1 48 0 248 362 105 0 chr15 86727225 86727330 -14653191 - MIR SINE MIR -59 149 34 343 252 61 46 chr15 86729290 86729421 -14651100 - MIR SINE MIR -121 141 9 437 221 19 10 chr15 86733671 86733775 -14646746 - MER103 DNA DNA -10 156 52 227 292 62 0 chr15 86734191 86734256 -14646265 + MIR SINE MIR 43 111 -97 203 138 0 0 chr15 86734681 86734710 -14645811 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 626 191 29 0 chr15 86736043 86736179 -14644342 - Charlie1 DNA MER1_type 0 2761 2622 * 831 227 49 18 chr15 86736172 86736397 -14644124 - Charlie1 DNA MER1_type -2529 232 1 469 181 69 3 chr15 86737346 86737499 -14643022 + MER20 DNA MER1_type 1 217 -2 1600 276 52 60 chr15 86737566 86738178 -14642343 + MER115 DNA AcHobo 87 693 0 324 0 0 0 chr15 86738269 86738305 -14642216 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2034 131 0 0 chr15 86738309 86738584 -14641937 - AluSx SINE Alu -37 275 1 577 197 72 13 chr15 86739092 86739244 -14641277 - L1ME4a LINE L1 -2 6119 5959 2067 203 44 14 chr15 86739394 86739896 -14640625 + L1MB8 LINE L1 5653 6169 -9 23 68 0 0 chr15 86739898 86739942 -14640579 + AT_rich Low_complexity Low_complexity 1 44 0 24 53 0 0 chr15 86739985 86740023 -14640498 + AT_rich Low_complexity Low_complexity 1 38 0 310 276 88 47 chr15 86740222 86740414 -14640107 - L1MC4a LINE L1 -1844 5964 5765 1895 127 137 6 chr15 86740607 86740929 -14639592 - MER47A DNA MER2_type 0 366 3 289 307 73 0 chr15 86740984 86741121 -14639400 - L1ME4a LINE L1 -343 5819 5673 1965 157 0 0 chr15 86743595 86743888 -14636633 + AluSx SINE Alu 1 293 -19 317 292 93 6 chr15 86745031 86745192 -14635329 - L2 LINE L2 -2 3311 3137 334 317 62 75 chr15 86745259 86745979 -14634542 - L2 LINE L2 -337 2977 2267 378 250 25 8 chr15 86746806 86746926 -14633595 - MIR SINE MIR -36 226 105 642 241 27 45 chr15 86747106 86747326 -14633195 - MIR SINE MIR -18 244 29 2122 108 0 7 chr15 86747519 86747806 -14632715 + AluSx SINE Alu 12 296 -16 2209 113 10 0 chr15 86747806 86748106 -14632415 + AluSx SINE Alu 1 303 -9 267 304 96 16 chr15 86748405 86748530 -14631991 + L2 LINE L2 3137 3271 -1 341 264 92 14 chr15 86749231 86749426 -14631095 - MIR SINE MIR -18 244 30 474 18 0 0 chr15 86750317 86750372 -14630149 + (CA)n Simple_repeat Simple_repeat 1 55 0 652 136 29 7 chr15 86752086 86752226 -14628295 + CT-rich Low_complexity Low_complexity 4 146 0 2066 136 0 0 chr15 86752228 86752536 -14627985 - AluSx SINE Alu -4 308 1 217 269 86 11 chr15 86753445 86753538 -14626983 - MIR SINE MIR -16 246 147 251 278 110 46 chr15 86753673 86753846 -14626675 - MIR SINE MIR -59 203 20 236 283 0 0 chr15 86755294 86755354 -14625167 - L2 LINE L2 0 3313 3254 2182 122 0 0 chr15 86755663 86755975 -14624546 - AluSx SINE Alu 0 312 1 180 178 0 89 chr15 86756847 86756892 -14623629 - L3 LINE CR1 -619 958 918 407 317 15 20 chr15 86757095 86757202 -14623319 + MIR SINE MIR 71 176 -86 2130 117 10 0 chr15 86757202 86757509 -14623012 + AluSx SINE Alu 1 310 -2 407 317 15 20 chr15 86757509 86757596 -14622925 + MIR SINE MIR 176 262 0 245 335 143 44 chr15 86758359 86758541 -14621980 - MIR SINE MIR -10 252 53 234 0 0 0 chr15 86758551 86758577 -14621944 + (T)n Simple_repeat Simple_repeat 1 26 0 363 303 86 31 chr15 86759799 86759961 -14620560 + MIR SINE MIR 20 190 -72 881 174 87 0 chr15 86761177 86761338 -14619183 + MER5A DNA MER1_type 3 177 -12 221 167 0 62 chr15 86761610 86761658 -14618863 - MIR SINE MIR -104 158 114 378 115 0 0 chr15 86762875 86762936 -14617585 + (TG)n Simple_repeat Simple_repeat 2 62 0 744 238 25 11 chr15 86762952 86763156 -14617365 - MIR SINE MIR -26 236 23 374 246 317 14 chr15 86763164 86763306 -14617215 + MER5A DNA MER1_type 4 188 -1 628 300 24 28 chr15 86764892 86765139 -14615382 + MIR SINE MIR 18 262 0 543 188 141 7 chr15 86765236 86765385 -14615136 - MER58B DNA MER1_type -1 340 172 372 263 89 117 chr15 86766386 86766782 -14613739 - L1M2 LINE L1 -4787 1343 873 390 274 107 44 chr15 86767276 86767531 -14612990 - L2 LINE L2 -322 2991 2725 487 301 55 27 chr15 86769266 86769412 -14611109 + MIR3 SINE MIR 33 182 -26 319 261 48 85 chr15 86769584 86769749 -14610772 + MIR3 SINE MIR 41 199 -9 224 280 56 64 chr15 86771645 86771770 -14608751 + MIR SINE MIR 28 151 -111 719 207 39 62 chr15 86771906 86772114 -14608407 - MER3 DNA MER1_type -5 204 2 447 301 117 19 chr15 86772773 86772979 -14607542 + MIR SINE MIR 37 262 0 229 264 32 32 chr15 86773222 86773347 -14607174 + GA-rich Low_complexity Low_complexity 2 126 0 316 322 110 0 chr15 86774287 86774433 -14606088 + MER5A DNA MER1_type 26 187 -2 208 314 331 0 chr15 86774484 86774605 -14605916 + MIR SINE MIR 81 241 -21 183 182 0 91 chr15 86774828 86774883 -14605638 + L3 LINE CR1 1277 1326 -251 2138 109 6 10 chr15 86776103 86776414 -14604107 + AluSg SINE Alu 1 310 0 1541 211 68 12 chr15 86776498 86776835 -14603686 - MLT1A1 LTR MaLR 0 365 10 314 324 50 45 chr15 86778249 86778428 -14602093 + MIR SINE MIR 45 224 -38 252 0 0 0 chr15 86778912 86778940 -14601581 + (TG)n Simple_repeat Simple_repeat 1 28 0 211 163 102 41 chr15 86779569 86779618 -14600903 + L2 LINE L2 3261 3312 -1 601 298 84 9 chr15 86780109 86780324 -14600197 + MIR SINE MIR 6 236 -26 2153 156 50 3 chr15 86780328 86780706 -14599815 - MSTD LTR MaLR 0 396 1 793 231 82 66 chr15 86780767 86781204 -14599317 - MLT1J1 LTR MaLR 0 446 3 187 250 0 0 chr15 86782008 86782048 -14598473 + MIR3 SINE MIR 146 185 -23 1270 193 8 8 chr15 86783243 86783497 -14597024 - L1MD3 LINE L1 0 7995 7742 313 281 117 8 chr15 86785110 86785238 -14595283 + MIR3 SINE MIR 2 143 -65 180 349 18 28 chr15 86786163 86786272 -14594249 - L2 LINE L2 -665 2649 2542 212 111 22 22 chr15 86786353 86786398 -14594123 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2287 163 45 10 chr15 86786419 86786823 -14593698 - MSTB LTR MaLR 0 426 9 278 308 119 22 chr15 86786925 86787079 -14593442 - L3b LINE CR1 -7 1570 1408 261 373 27 0 chr15 86787131 86787241 -14593280 - L3b LINE CR1 -172 1411 1299 1842 155 0 7 chr15 86787320 86787616 -14592905 + AluSx SINE Alu 1 294 -18 270 308 111 4 chr15 86788419 86788594 -14591927 + MIR3 SINE MIR 6 196 -66 708 161 0 0 chr15 86789258 86789401 -14591120 + (CCA)n Simple_repeat Simple_repeat 1 143 0 431 283 68 34 chr15 86790770 86790947 -14589574 + MER117 DNA MER1_type 1 183 -14 378 0 0 0 chr15 86791410 86791452 -14589069 + (TA)n Simple_repeat Simple_repeat 2 43 0 338 296 246 15 chr15 86791468 86791667 -14588854 - L3 LINE CR1 -929 648 404 401 246 44 98 chr15 86791675 86791858 -14588663 - MIR3 SINE MIR -27 181 9 274 346 15 44 chr15 86791849 86791985 -14588536 - MIR SINE MIR -74 188 57 * 261 318 30 53 chr15 86792470 86792602 -14587919 + L2 LINE L2 3184 3312 -1 273 300 119 56 chr15 86792857 86793017 -14587504 + L3 LINE CR1 1397 1566 -11 2016 169 13 15 chr15 86794381 86794772 -14585749 - MLT1B LTR MaLR 0 390 1 250 299 10 21 chr15 86795709 86795806 -14584715 + CT-rich Low_complexity Low_complexity 2 97 0 282 250 133 61 chr15 86797412 86797592 -14582929 - L2 LINE L2 -35 3278 3086 322 351 178 0 chr15 86798072 86798246 -14582275 - MIR SINE MIR -11 251 47 2141 90 0 23 chr15 86799929 86800230 -14580291 + AluSc SINE Alu 1 294 -15 213 175 0 0 chr15 86802584 86802624 -14577897 + CT-rich Low_complexity Low_complexity 1 40 0 180 311 53 73 chr15 86802625 86802776 -14577745 + MIR SINE MIR 106 253 -9 369 0 0 0 chr15 86803653 86803694 -14576827 + (CA)n Simple_repeat Simple_repeat 1 41 0 434 342 22 16 chr15 86803798 86803982 -14576539 - MIR3 SINE MIR -11 197 13 1300 104 0 84 chr15 86805479 86805681 -14574840 - AluSx SINE Alu -127 185 1 253 355 65 8 chr15 86806356 86806480 -14574041 - MIR SINE MIR -64 198 68 2363 108 0 0 chr15 86807889 86808194 -14572327 - AluSc SINE Alu -4 305 1 3799 139 37 82 chr15 86808194 86808522 -14571999 - MER4E LTR ERV1 -23 756 415 344 42 0 0 chr15 86808522 86808570 -14571951 + L1PA3 LINE L1 6108 6155 0 3799 139 37 82 chr15 86808570 86809033 -14571488 - MER4E LTR ERV1 -364 415 1 25 0 0 0 chr15 86810317 86810342 -14570179 + AT_rich Low_complexity Low_complexity 1 25 0 2295 189 178 52 chr15 86811265 86812154 -14568367 - Charlie2 DNA MER1_type -2 2860 1860 454 242 202 44 chr15 86812133 86812259 -14568262 - Charlie2 DNA MER1_type -2437 345 240 * 336 48 0 0 chr15 86812259 86812301 -14568220 + (TG)n Simple_repeat Simple_repeat 2 43 0 454 242 202 44 chr15 86812301 86812471 -14568050 - Charlie2 DNA MER1_type -2542 240 2 2079 239 87 82 chr15 86812611 86813776 -14566745 + L1MC5 LINE L1 5716 6874 -1087 342 0 0 0 chr15 86813776 86813814 -14566707 + (TG)n Simple_repeat Simple_repeat 2 39 0 2079 239 87 82 chr15 86813814 86814396 -14566125 + L1MC5 LINE L1 6874 7496 -465 387 0 0 0 chr15 86814396 86814439 -14566082 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 2079 239 87 82 chr15 86814439 86814608 -14565913 + L1MC5 LINE L1 7496 7663 -298 470 192 27 123 chr15 86814664 86814810 -14565711 - MER58B DNA MER1_type 0 341 210 1244 119 0 0 chr15 86814811 86814987 -14565534 + AluSq SINE Alu 132 307 -6 254 286 0 14 chr15 86815076 86815146 -14565375 - MER5A DNA MER1_type -84 105 37 352 320 36 2 chr15 86815152 86815323 -14565198 - MIR SINE MIR -48 160 1 869 141 52 68 chr15 86815543 86815735 -14564786 + MER53 DNA DNA 1 189 0 196 309 36 12 chr15 86816491 86816575 -14563946 + MIR SINE MIR 126 211 -51 324 243 210 22 chr15 86816932 86817054 -14563467 - MIR SINE MIR -61 147 21 25 51 0 0 chr15 86817471 86817510 -14563011 + AT_rich Low_complexity Low_complexity 1 39 0 258 202 12 60 chr15 86817583 86817667 -14562854 + L1MC4 LINE L1 6616 6695 -1347 267 31 0 0 chr15 86817676 86817708 -14562813 + (TA)n Simple_repeat Simple_repeat 1 32 0 282 274 48 8 chr15 86817851 86817975 -14562546 - L1MC4a LINE L1 -1879 5929 5801 1447 303 123 17 chr15 86817991 86819617 -14560904 - L1MC4a LINE L1 -389 5732 3928 23 33 0 0 chr15 86820080 86820110 -14560411 + AT_rich Low_complexity Low_complexity 1 30 0 422 300 94 97 chr15 86820165 86821028 -14559493 - L1MC4a LINE L1 -2869 3277 2418 40 21 0 0 chr15 86821094 86821141 -14559380 + AT_rich Low_complexity Low_complexity 1 47 0 237 231 67 39 chr15 86821195 86821299 -14559222 + L1MCa LINE L1 1958 2064 -4362 292 309 44 22 chr15 86822052 86822188 -14558333 - HAL1 LINE L1 -805 1702 1564 2161 136 0 0 chr15 86822189 86822497 -14558024 + AluSq SINE Alu 1 308 -5 2422 53 0 0 chr15 86822666 86822978 -14557543 + AluY SINE Alu 1 312 0 214 237 13 53 chr15 86824749 86824825 -14555696 - MIR SINE MIR -33 229 157 432 0 0 0 chr15 86825430 86825478 -14555043 + (CA)n Simple_repeat Simple_repeat 2 49 0 221 301 145 0 chr15 86826192 86826275 -14554246 - MIR SINE MIR -108 154 60 222 232 89 89 chr15 86826501 86826613 -14553908 - MIR SINE MIR -70 192 81 195 129 0 0 chr15 86827594 86827625 -14552896 + (A)n Simple_repeat Simple_repeat 1 31 0 237 33 0 0 chr15 86827646 86827676 -14552845 + (TA)n Simple_repeat Simple_repeat 2 31 0 312 241 60 0 chr15 86830313 86830396 -14550125 + MIR3 SINE MIR 114 201 -7 3688 116 11 17 chr15 86833797 86834162 -14546359 - L1PB1 LINE L1 -1 6150 5787 336 24 0 0 chr15 86834162 86834203 -14546318 + (TG)n Simple_repeat Simple_repeat 2 42 0 3688 116 11 17 chr15 86834203 86834372 -14546149 - L1PB1 LINE L1 -364 5787 5619 23 0 0 0 chr15 86836514 86836537 -14543984 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr15 86837842 86837873 -14542648 + AT_rich Low_complexity Low_complexity 1 31 0 260 197 0 13 chr15 86837903 86837979 -14542542 + (TA)n Simple_repeat Simple_repeat 2 76 0 225 312 36 43 chr15 86838187 86838325 -14542196 + MIR SINE MIR 70 206 -56 402 21 0 0 chr15 86840362 86840409 -14540112 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 68 0 0 chr15 86844041 86844085 -14536436 + AT_rich Low_complexity Low_complexity 1 44 0 285 247 0 0 chr15 86844359 86844440 -14536081 + (TA)n Simple_repeat Simple_repeat 2 82 0 859 212 40 75 chr15 86845295 86845521 -14535000 - MER20 DNA MER1_type 0 219 2 26 50 0 0 chr15 86847041 86847081 -14533440 + AT_rich Low_complexity Low_complexity 1 40 0 2347 84 10 0 chr15 86847082 86847379 -14533142 - AluY SINE Alu -11 300 1 1296 147 0 102 chr15 86847389 86847654 -14532867 - AluJo SINE Alu -25 287 50 458 311 99 5 chr15 86848334 86848546 -14531975 - MIR SINE MIR -26 236 5 222 191 0 0 chr15 86848656 86848703 -14531818 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 222 260 25 118 chr15 86850274 86850437 -14530084 - MIR SINE MIR -76 132 39 457 294 61 20 chr15 86850567 86850764 -14529757 + MIR SINE MIR 58 262 0 325 188 10 10 chr15 86850767 86850863 -14529658 + (CAT)n Simple_repeat Simple_repeat 1 96 0 555 244 19 31 chr15 86851327 86851491 -14529030 - MIR SINE MIR -63 145 6 294 311 0 42 chr15 86852461 86852545 -14527976 - MIR SINE MIR -63 145 84 696 175 108 134 chr15 86852545 86852768 -14527753 - MER20 DNA MER1_type -2 217 1 294 311 0 42 chr15 86852768 86852835 -14527686 - MIR SINE MIR -124 84 16 31 58 0 0 chr15 86853576 86853628 -14526893 + AT_rich Low_complexity Low_complexity 1 52 0 557 293 98 51 chr15 86853913 86854421 -14526100 + HAL1b LINE L1 1 532 -816 1766 133 53 0 chr15 86854529 86854814 -14525707 + AluSq SINE Alu 1 300 -13 232 283 211 12 chr15 86855103 86855269 -14525252 + HAL1b LINE L1 742 940 -408 * 1883 161 92 0 chr15 86855266 86855626 -14524895 - L1M2 LINE L1 -510 5781 5389 2087 161 20 22 chr15 86855658 86856063 -14524458 + L1MA7 LINE L1 5882 6285 -6 293 294 75 20 chr15 86856237 86856383 -14524138 + MIR SINE MIR 28 181 -81 1935 58 54 8 chr15 86856426 86856686 -14523835 - AluY SINE Alu -9 302 31 266 354 69 24 chr15 86856933 86857179 -14523342 - MIR SINE MIR 0 262 6 2106 146 23 18 chr15 86857220 86857618 -14522903 + L1MB5 LINE L1 5767 6166 -8 298 352 127 5 chr15 86857926 86858139 -14522382 - MIR SINE MIR 0 262 24 328 188 242 16 chr15 86859122 86859250 -14521271 + Charlie7 DNA MER1_type 1 157 -2455 558 29 0 0 chr15 86860517 86860585 -14519936 + (TGGA)n Simple_repeat Simple_repeat 1 68 0 281 77 0 0 chr15 86860643 86860682 -14519839 + Alu SINE Alu 1 39 -264 2718 189 32 25 chr15 86861016 86861545 -14518976 + MLT2B3 LTR ERVL 2 534 -20 238 67 44 0 chr15 86861548 86861593 -14518928 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 310 167 0 30 chr15 86861593 86861659 -14518862 + MLT2B1 LTR ERVL 450 513 -7 181 241 17 35 chr15 86862085 86862143 -14518378 - L2 LINE L2 0 3272 3216 3820 154 61 33 chr15 86862510 86863388 -14517133 + MER52C LTR ERV1 395 1276 -2 298 231 0 0 chr15 86863389 86863454 -14517067 - L1MA9 LINE L1 -78 6234 6170 221 81 0 27 chr15 86863465 86863502 -14517019 + (CCCCCT)n Simple_repeat Simple_repeat 6 41 0 1023 142 0 0 chr15 86863502 86863678 -14516843 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 3692 183 24 55 chr15 86863696 86864064 -14516457 - L1MA9 LINE L1 -170 6142 5764 216 0 0 0 chr15 86864064 86864088 -14516433 + (CA)n Simple_repeat Simple_repeat 2 25 0 3692 183 24 55 chr15 86864088 86864600 -14515921 - L1MA9 LINE L1 -548 5764 5293 14488 26 0 0 chr15 86864612 86867052 -14513469 - L1PA3 LINE L1 -5 6150 3711 2392 93 3 0 chr15 86867053 86867365 -14513156 - L1P LINE L1 -5698 448 136 3266 78 4 9 chr15 86867367 86867817 -14512704 - LTR7 LTR ERV1 -2 448 1 2629 71 45 13 chr15 86867817 86868197 -14512324 - HERVH LTR ERV1 0 7713 7322 1387 113 18 57 chr15 86868195 86868424 -14512097 - HERVH LTR ERV1 -1894 5819 5600 * 4323 143 9 1 chr15 86868425 86869082 -14511439 - HERVH LTR ERV1 -2564 5149 4488 3442 112 6 2 chr15 86869084 86869584 -14510937 - HERVH LTR ERV1 -3720 3993 3492 * 20440 93 58 48 chr15 86869574 86872832 -14507689 - HERVH LTR ERV1 -4423 3290 1 3384 69 7 7 chr15 86872834 86873282 -14507239 - LTR7 LTR ERV1 -2 448 1 1117 65 7 0 chr15 86873282 86873421 -14507100 - L1P LINE L1 -6006 140 1 1335 190 11 18 chr15 86873426 86873710 -14506811 - L1MA9 LINE L1 -848 5298 5017 219 233 8 150 chr15 86873967 86874087 -14506434 + L2 LINE L2 3170 3272 0 1199 211 60 71 chr15 86874660 86874996 -14505525 + MER46C DNA MER2_type 1 332 -6 325 132 13 13 chr15 86875231 86875307 -14505214 + CT-rich Low_complexity Low_complexity 1 76 0 8800 103 32 9 chr15 86875575 86876830 -14503691 - HSMAR1 DNA Mariner -3 1284 1 267 274 0 0 chr15 86878411 86878484 -14502037 - MER116 DNA Mariner 0 80 8 473 295 157 14 chr15 86878660 86878870 -14501651 - MIR SINE MIR 0 262 23 206 275 42 92 chr15 86879006 86879148 -14501373 + MIR SINE MIR 20 154 -108 1481 211 60 77 chr15 86879536 86879604 -14500917 - MLT1C LTR MaLR 0 467 399 1942 134 3 7 chr15 86879604 86879915 -14500606 + AluSx SINE Alu 1 312 0 1481 211 60 77 chr15 86879915 86880218 -14500303 - MLT1C LTR MaLR -68 399 92 1191 56 0 0 chr15 86880218 86880360 -14500161 + L1PA10 LINE L1 6008 6149 -19 180 0 0 0 chr15 86880360 86880380 -14500141 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 1481 211 60 77 chr15 86880380 86880476 -14500045 - MLT1C LTR MaLR -373 94 6 598 341 25 81 chr15 86880525 86880956 -14499565 - L2 LINE L2 0 3272 2866 387 238 54 10 chr15 86881162 86881292 -14499229 - MIR SINE MIR -23 185 51 2076 126 3 3 chr15 86881686 86881995 -14498526 - AluSx SINE Alu -3 309 1 437 349 33 0 chr15 86882504 86882656 -14497865 + MIR3 SINE MIR 42 198 -10 1017 186 53 0 chr15 86883872 86884060 -14496461 + MER20 DNA MER1_type 21 218 -1 1988 134 19 0 chr15 86884223 86884530 -14495991 + AluSq SINE Alu 1 313 0 380 284 55 70 chr15 86884697 86884898 -14495623 - MIR SINE MIR -54 208 11 2255 91 0 0 chr15 86885656 86885953 -14494568 - AluY SINE Alu -14 297 1 1123 170 32 37 chr15 86886484 86886702 -14493819 - MER20 DNA MER1_type -2 217 1 582 271 114 24 chr15 86886821 86887031 -14493490 + MIR SINE MIR 20 248 -14 242 259 5 81 chr15 86887523 86887708 -14492813 + C-rich Low_complexity Low_complexity 1 171 0 39 70 0 0 chr15 86890369 86890426 -14490095 + GC_rich Low_complexity Low_complexity 1 57 0 324 368 17 11 chr15 86890540 86890714 -14489807 + CT-rich Low_complexity Low_complexity 1 175 0 200 192 0 61 chr15 86891055 86891154 -14489367 + CT-rich Low_complexity Low_complexity 1 93 0 393 312 11 51 chr15 86891170 86891458 -14489063 + CT-rich Low_complexity Low_complexity 1 276 0 * 395 325 18 18 chr15 86891384 86891553 -14488968 + C-rich Low_complexity Low_complexity 3 171 0 21 0 0 0 chr15 86891823 86891844 -14488677 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr15 86891884 86891907 -14488614 + GC_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 86892118 86892140 -14488381 + GC_rich Low_complexity Low_complexity 1 22 0 220 282 0 13 chr15 86893467 86893545 -14486976 + T-rich Low_complexity Low_complexity 4 80 0 203 326 20 0 chr15 86893886 86893984 -14486537 + CT-rich Low_complexity Low_complexity 3 102 0 239 358 11 0 chr15 86894204 86894299 -14486222 + C-rich Low_complexity Low_complexity 5 100 0 229 203 0 17 chr15 86895929 86895988 -14484533 + C-rich Low_complexity Low_complexity 6 63 0 340 225 35 23 chr15 86897790 86897963 -14482558 + A-rich Low_complexity Low_complexity 5 179 0 240 215 45 40 chr15 86898245 86898422 -14482099 + (CACAA)n Simple_repeat Simple_repeat 3 180 0 223 239 14 28 chr15 86899758 86899829 -14480692 + C-rich Low_complexity Low_complexity 5 74 0 224 261 34 23 chr15 86904464 86904640 -14475881 + (CACAC)n Simple_repeat Simple_repeat 3 180 0 295 326 55 51 chr15 86907427 86907700 -14472821 - L3 LINE CR1 -58 1519 1246 1105 166 64 0 chr15 86907737 86907924 -14472597 + MER58A DNA MER1_type 26 224 0 2002 99 16 88 chr15 86907932 86908295 -14472226 - MER1B DNA MER1_type 0 337 1 311 313 114 45 chr15 86908332 86908578 -14471943 - L3 LINE CR1 -377 1200 938 703 283 58 27 chr15 86908617 86908840 -14471681 - MIR SINE MIR -5 257 28 1586 245 61 48 chr15 86908952 86909129 -14471392 - L2 LINE L2 -3 3310 3137 1715 152 50 0 chr15 86909129 86909426 -14471095 + AluSx SINE Alu 1 312 0 1586 245 61 48 chr15 86909426 86910158 -14470363 - L2 LINE L2 -176 3137 2427 592 115 11 0 chr15 86910218 86910305 -14470216 - L1PA14 LINE L1 -216 5945 5858 187 171 29 0 chr15 86910379 86910414 -14470107 - L2 LINE L2 -1 3271 3236 180 0 0 0 chr15 86911692 86911712 -14468809 + (TCTCTG)n Simple_repeat Simple_repeat 3 22 0 533 284 10 33 chr15 86911728 86911943 -14468578 - L1ME4a LINE L1 -201 5920 5710 355 330 85 0 chr15 86912360 86912536 -14467985 + MIR SINE MIR 28 218 -44 289 309 101 10 chr15 86913966 86914114 -14466407 + MIR SINE MIR 40 196 -62 2237 119 0 0 chr15 86914165 86914476 -14466045 + AluSx SINE Alu 1 311 -1 629 279 15 79 chr15 86915624 86915889 -14464632 - MIR SINE MIR -2 260 13 413 270 19 84 chr15 86916091 86916306 -14464215 - L2 LINE L2 -177 3095 2895 1171 156 10 15 chr15 86916384 86916589 -14463932 + MER20 DNA MER1_type 16 219 0 189 382 32 16 chr15 86916618 86916804 -14463717 - L2 LINE L2 -188 3084 2896 2251 107 0 3 chr15 86916917 86917227 -14463294 + AluSc SINE Alu 1 309 0 374 276 62 42 chr15 86917237 86917429 -14463092 - L2 LINE L2 -550 2764 2569 193 189 0 0 chr15 86917447 86917484 -14463037 - MIR SINE MIR -17 245 209 22 56 0 0 chr15 86917557 86917593 -14462928 + AT_rich Low_complexity Low_complexity 1 36 0 188 189 27 0 chr15 86917829 86917866 -14462655 + L2 LINE L2 3268 3305 -8 2236 103 3 0 chr15 86917867 86918177 -14462344 + AluSx SINE Alu 1 311 -1 207 0 0 0 chr15 86918177 86918200 -14462321 + (TA)n Simple_repeat Simple_repeat 2 24 0 271 221 159 44 chr15 86918551 86918664 -14461857 - MLT1J2 LTR MaLR -15 435 310 * 624 265 69 48 chr15 86918647 86918938 -14461583 - MLT1H LTR MaLR -242 307 11 221 276 53 71 chr15 86919201 86919371 -14461150 + L2 LINE L2 1950 2116 -1198 2053 186 21 7 chr15 86919396 86919831 -14460690 + L1MA4 LINE L1 5857 6297 -3 2206 173 8 0 chr15 86920231 86920612 -14459909 - L1MA4 LINE L1 -419 5881 5498 887 249 113 61 chr15 86920736 86920871 -14459650 + L1ME4a LINE L1 5511 5638 -483 1734 166 23 0 chr15 86920871 86921173 -14459348 - AluJb SINE Alu -1 311 3 1370 111 28 0 chr15 86921183 86921399 -14459122 - L1MA5 LINE L1 -2 6298 6077 2887 133 63 26 chr15 86921401 86921896 -14458625 + MLT2B2 LTR ERVL 3 515 0 887 249 113 61 chr15 86921896 86922324 -14458197 + L1ME4a LINE L1 5646 6118 -3 403 301 41 8 chr15 86922711 86922834 -14457687 + MER91A DNA MER1_type 19 145 -51 1472 167 0 19 chr15 86922863 86923120 -14457401 - AluJo SINE Alu -24 288 37 202 195 115 177 chr15 86923156 86923269 -14457252 + MER91A DNA MER1_type 90 195 -1 555 235 17 0 chr15 86923477 86923592 -14456929 + MER5B DNA MER1_type 3 119 -59 205 379 21 11 chr15 86923653 86923748 -14456773 + MIR SINE MIR 45 140 -122 190 292 14 56 chr15 86923925 86923997 -14456524 + L3 LINE CR1 1509 1577 0 306 0 0 0 chr15 86924081 86924115 -14456406 + (T)n Simple_repeat Simple_repeat 1 34 0 627 263 11 42 chr15 86924360 86924498 -14456023 - MLT1A1 LTR MaLR -181 184 52 2188 122 117 8 chr15 86924498 86924884 -14455637 - MSTA LTR MaLR 0 428 1 627 263 11 42 chr15 86924884 86924935 -14455586 - MLT1A1 LTR MaLR -313 52 1 277 333 67 31 chr15 86925505 86925700 -14454821 + L2 LINE L2 2812 3013 -300 315 154 0 0 chr15 86925718 86925770 -14454751 + MIR SINE MIR 18 69 -193 319 291 23 0 chr15 86925790 86925876 -14454645 + MIR SINE MIR 174 261 -1 637 210 74 40 chr15 86925945 86926121 -14454400 + L2 LINE L2 3132 3313 0 1670 209 27 0 chr15 86926168 86926498 -14454023 - MLT1A1 LTR MaLR -2 363 25 1878 157 0 3 chr15 86926950 86927255 -14453266 - AluJb SINE Alu -8 304 1 1420 237 55 32 chr15 86927283 86927663 -14452858 + MLT1J LTR MaLR 111 499 -12 560 236 14 107 chr15 86928361 86928556 -14451965 + L2 LINE L2 3118 3293 -20 1864 131 10 10 chr15 86928556 86928854 -14451667 + AluSx SINE Alu 1 298 -14 560 236 14 107 chr15 86928854 86928874 -14451647 + L2 LINE L2 3293 3313 0 1822 147 55 58 chr15 86929338 86929686 -14450835 - MER7A DNA MER2_type -1 345 1 257 256 96 51 chr15 86930072 86930228 -14450293 - MER103 DNA DNA -3 163 1 578 293 76 36 chr15 86931670 86931919 -14448602 + L2 LINE L2 3055 3313 0 655 207 279 22 chr15 86931928 86932150 -14448371 - MLT1K LTR MaLR -127 461 183 410 245 75 54 chr15 86932242 86932389 -14448132 - MIR SINE MIR -49 213 64 892 181 7 0 chr15 86932405 86932554 -14447967 + MLT1A2 LTR MaLR 225 374 0 257 150 0 0 chr15 86932822 86932862 -14447659 - MLT1A1 LTR MaLR -417 40 1 1212 254 61 31 chr15 86932863 86933021 -14447500 - HAL1 LINE L1 -154 2353 2201 2151 190 68 14 chr15 86933021 86933464 -14447057 - MLT1C LTR MaLR 0 467 1 1212 254 61 31 chr15 86933464 86933794 -14446727 - HAL1 LINE L1 -306 2201 1850 1341 236 29 9 chr15 86933829 86934172 -14446349 - HAL1 LINE L1 -736 1771 1422 364 234 204 15 chr15 86934175 86934312 -14446209 + MLT1E LTR MaLR 1 163 -430 1770 230 75 31 chr15 86934314 86934767 -14445754 + MLT1E LTR MaLR 120 592 -1 2507 226 61 139 chr15 86934818 86936241 -14444280 - HAL1 LINE L1 -1182 1325 14 310 288 126 0 chr15 86936382 86936493 -14444028 + L1MEd LINE L1 59 183 -5936 379 287 96 0 chr15 86936769 86936884 -14443637 - L2 LINE L2 -587 2727 2602 265 197 16 16 chr15 86936886 86936947 -14443574 - MLT1G LTR MaLR -2 553 493 1267 239 219 14 chr15 86936988 86937427 -14443094 - MLT1G LTR MaLR -52 538 10 462 271 27 71 chr15 86937430 86937655 -14442866 - L2 LINE L2 -704 2610 2396 45204 37 4 1 chr15 86937716 86943851 -14436670 + L1PA4 LINE L1 1 6152 -3 360 257 50 145 chr15 86943869 86944126 -14436395 - MIR SINE MIR -15 247 5 234 352 76 0 chr15 86944140 86944245 -14436276 - MIR SINE MIR -138 124 12 186 43 0 0 chr15 86944421 86944444 -14436077 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 235 278 53 99 chr15 86944809 86944960 -14435561 + L2 LINE L2 3170 3313 0 328 243 106 78 chr15 86945564 86945738 -14434783 + MIR SINE MIR 10 192 -62 234 273 182 0 chr15 86946275 86946407 -14434114 + MIR3 SINE MIR 38 193 -15 192 225 0 0 chr15 86946852 86946892 -14433629 - MIR SINE MIR -72 190 151 2336 97 17 175 chr15 86946892 86947428 -14433093 + LTR12 LTR ERV1 2 452 -262 262 261 48 8 chr15 86947428 86947523 -14432998 - MIR SINE MIR -26 182 84 201 228 79 69 chr15 86947857 86947958 -14432563 - MIR SINE MIR -74 134 33 225 268 127 51 chr15 86948296 86948453 -14432068 + MIR SINE MIR 24 192 -70 1976 112 0 4 chr15 86948710 86949045 -14431476 + AluSq SINE Alu 10 343 0 1981 107 10 3 chr15 86949237 86949527 -14430994 + AluSc SINE Alu 1 292 -17 207 0 0 0 chr15 86950485 86950508 -14430013 + (ATG)n Simple_repeat Simple_repeat 2 24 0 825 222 30 30 chr15 86950551 86950598 -14429923 - MIR SINE MIR -57 205 159 1859 167 66 85 chr15 86950598 86951113 -14429408 + MLT1D LTR MaLR 1 505 0 825 222 30 30 chr15 86951113 86951268 -14429253 - MIR SINE MIR -102 160 3 265 289 67 30 chr15 86951297 86951432 -14429089 - MIR SINE MIR -53 209 70 2131 133 141 5 chr15 86951450 86951827 -14428694 + MSTA LTR MaLR 1 428 0 2185 91 0 19 chr15 86952971 86953280 -14427241 - AluSc SINE Alu -6 303 1 1785 148 0 13 chr15 86954182 86954485 -14426036 - AluJo SINE Alu -13 299 1 716 216 40 17 chr15 86955072 86955248 -14425273 - MER5A DNA MER1_type 0 189 10 243 214 0 0 chr15 86955581 86955623 -14424898 + L2 LINE L2 3258 3299 -14 214 196 20 20 chr15 86956506 86956557 -14423964 + CT-rich Low_complexity Low_complexity 1 51 0 508 216 0 23 chr15 86956733 86956904 -14423617 + CT-rich Low_complexity Low_complexity 3 169 0 184 290 188 0 chr15 86956918 86956987 -14423534 - L2 LINE L2 -23 3249 3168 401 262 10 10 chr15 86957289 86957392 -14423129 + MIR3 SINE MIR 85 187 -21 419 226 161 30 chr15 86957455 86957623 -14422898 + MIR SINE MIR 12 201 -61 454 265 0 82 chr15 86958411 86958514 -14422007 - MIR SINE MIR -25 237 156 1564 263 30 25 chr15 86958514 86958921 -14421600 + MLT1I LTR MaLR 1 409 0 454 265 0 82 chr15 86958921 86959013 -14421508 - MIR SINE MIR -106 156 58 230 306 45 82 chr15 86959932 86960066 -14420455 - MIR SINE MIR -17 245 117 212 246 0 33 chr15 86960074 86960135 -14420386 + MIR SINE MIR 204 262 0 360 333 6 57 chr15 86960292 86960469 -14420052 + MER5B DNA MER1_type 7 174 -4 2416 86 0 0 chr15 86960640 86960941 -14419580 + AluY SINE Alu 9 309 -2 1296 233 97 78 chr15 86960959 86961486 -14419035 + MLT1F1 LTR MaLR 5 566 -1 1590 217 115 23 chr15 86961529 86961972 -14418549 + MLT1D LTR MaLR 22 505 0 236 337 11 33 chr15 86962647 86962739 -14417782 - MIR3 SINE MIR -113 95 6 192 278 227 21 chr15 86962785 86962882 -14417639 + MIR SINE MIR 30 146 -62 222 152 76 136 chr15 86963688 86963754 -14416767 - L2 LINE L2 -1 3312 3251 487 274 153 14 chr15 86963758 86963973 -14416548 + MIR SINE MIR 4 248 -14 2263 92 0 7 chr15 86965505 86965826 -14414695 - AluSc SINE Alu 0 319 1 293 321 163 19 chr15 86965967 86966335 -14414186 + L2 LINE L2 2228 2648 -666 1093 285 56 46 chr15 86966466 86967006 -14413515 - MLT1H LTR MaLR -4 545 1 264 354 79 8 chr15 86967981 86968108 -14412413 - L2 LINE L2 -13 3300 3165 837 134 8 0 chr15 86968148 86968267 -14412254 - FLAM_A SINE Alu -13 120 1 200 264 38 19 chr15 86968283 86968336 -14412185 + MIR SINE MIR 35 88 -174 376 290 97 16 chr15 86968481 86968605 -14411916 + MIR SINE MIR 95 228 -34 661 247 33 55 chr15 86969948 86970094 -14410427 + MIR SINE MIR 65 208 -54 2458 180 9 11 chr15 86970094 86970554 -14409967 - MER65C LTR ERV1 -2 459 1 661 247 33 55 chr15 86970554 86970589 -14409932 + MIR SINE MIR 208 242 -20 278 353 68 53 chr15 86970909 86971189 -14409332 + L2 LINE L2 2815 3104 -168 1621 209 30 12 chr15 86971189 86971520 -14409001 + MER58B DNA MER1_type 1 337 -4 278 353 68 53 chr15 86971520 86971636 -14408885 + L2 LINE L2 3104 3217 -55 270 197 55 102 chr15 86971636 86971763 -14408758 + LTR33A LTR ERVL 237 357 -166 235 242 231 44 chr15 86971789 86971880 -14408641 - MIR SINE MIR -59 149 43 206 319 8 59 chr15 86972335 86972454 -14408067 + L3 LINE CR1 1274 1386 -191 2091 128 3 0 chr15 86972524 86972820 -14407701 - AluSg SINE Alu -13 297 1 351 0 0 0 chr15 86973244 86973283 -14407238 + (TG)n Simple_repeat Simple_repeat 2 40 0 2005 130 11 0 chr15 86973950 86974234 -14406287 + AluSx SINE Alu 13 299 -13 273 347 74 0 chr15 86974240 86974361 -14406160 + MIR SINE MIR 36 165 -97 244 295 19 38 chr15 86974364 86974469 -14406052 + MLT1K LTR MaLR 3 105 -483 1280 256 133 9 chr15 86974469 86974891 -14405630 + MLT1K LTR MaLR 1 474 -2 311 226 59 29 chr15 86974904 86975006 -14405515 + MIR SINE MIR 153 257 -5 1847 163 6 15 chr15 86975876 86976214 -14404307 - MER58B DNA MER1_type -6 335 1 300 332 41 36 chr15 86976273 86976323 -14404198 - MIR SINE MIR -58 204 156 4567 152 23 30 chr15 86976323 86977113 -14403408 - LTR1 LTR ERV1 0 785 2 300 332 41 36 chr15 86977113 86977258 -14403263 - MIR SINE MIR -106 156 8 201 385 48 42 chr15 86977278 86977444 -14403077 + L2 LINE L2 3080 3246 -26 261 163 0 0 chr15 86977444 86977493 -14403028 + CT-rich Low_complexity Low_complexity 1 49 0 210 222 9 139 chr15 86978067 86978175 -14402346 + L2 LINE L2 3179 3272 0 2254 93 3 10 chr15 86978178 86978502 -14402019 + AluSq SINE Alu 1 313 0 332 222 10 61 chr15 86978872 86978971 -14401550 - MIR3 SINE MIR -3 205 112 459 333 23 6 chr15 86979212 86979386 -14401135 - MER5A DNA MER1_type -6 183 7 527 255 44 2 chr15 86979778 86979940 -14400581 - MIR SINE MIR -63 145 22 186 301 137 14 chr15 86980603 86980676 -14399845 + MIR3 SINE MIR 124 205 -3 366 320 116 6 chr15 86980719 86980891 -14399630 - MIR SINE MIR -6 256 66 1096 164 80 5 chr15 86981020 86981221 -14399300 + MER20 DNA MER1_type 4 219 0 1002 230 47 64 chr15 86981462 86981496 -14399025 + MLT2C1 LTR ERVL 1 34 -363 722 164 8 22 chr15 86981496 86981630 -14398891 - FLAM_C SINE Alu 0 133 2 1002 230 47 64 chr15 86981630 86982085 -14398436 + MLT2C1 LTR ERVL 34 397 0 918 194 56 6 chr15 86983318 86983498 -14397023 - MER5A DNA MER1_type 0 189 1 521 289 106 7 chr15 86986199 86986500 -14394021 - MLT1I LTR MaLR -6 403 36 1165 178 205 51 chr15 86987517 86987888 -14392633 - MSTC LTR MaLR 0 428 1 378 351 62 27 chr15 86987954 86988327 -14392194 - HERVL LTR ERVL -452 5312 4927 335 301 0 0 chr15 86988337 86988420 -14392101 - HERVL LTR ERVL -3858 1796 1714 1168 220 92 38 chr15 86988454 86988854 -14391667 - L1ME LINE L1 -2227 3988 3567 * 1568 280 64 8 chr15 86988852 86989575 -14390946 - L1ME LINE L1 -4578 1818 1007 1021 155 0 53 chr15 86989579 86989766 -14390755 - AluJb SINE Alu 0 312 136 3211 241 49 37 chr15 86989767 86990378 -14390143 - L1MEc LINE L1 -3017 3198 2596 1976 140 98 25 chr15 86990378 86990777 -14389744 - MSTC LTR MaLR 0 428 1 3211 241 49 37 chr15 86990777 86991543 -14388978 - L1MEc LINE L1 -3619 2596 1848 2194 113 0 13 chr15 86991543 86991844 -14388677 + AluSx SINE Alu 5 301 -11 3211 241 49 37 chr15 86991844 86992101 -14388420 - L1MEc LINE L1 -4367 1848 1596 380 198 33 22 chr15 87042221 87042312 -14338209 + L1MB8 LINE L1 6040 6131 -47 258 291 0 0 chr15 87042573 87042700 -14337821 + (CA)n Simple_repeat Simple_repeat 2 128 0 235 198 0 0 chr15 87042753 87042803 -14337718 + L1MB7 LINE L1 6125 6175 -4 876 97 0 32 chr15 87043978 87044132 -14336389 + (GAAAA)n Simple_repeat Simple_repeat 3 151 0 549 44 0 0 chr15 87045318 87045386 -14335135 + (CA)n Simple_repeat Simple_repeat 1 68 0 2263 58 0 4 chr15 87046358 87046633 -14333888 + AluY SINE Alu 26 299 -12 306 148 0 0 chr15 87046778 87046832 -14333689 + (T)n Simple_repeat Simple_repeat 1 54 0 1344 191 34 0 chr15 87046993 87047229 -14333292 + AluSx SINE Alu 2 245 -67 471 130 0 0 chr15 87047242 87047319 -14333202 + (TTCCC)n Simple_repeat Simple_repeat 3 79 0 1749 70 0 5 chr15 87047322 87047535 -14332986 - AluSq SINE Alu -101 212 1 709 140 9 0 chr15 87047720 87047827 -14332694 - AluSq/x SINE Alu -203 109 2 226 224 20 0 chr15 87048123 87048172 -14332349 + L2 LINE L2 3263 3312 -1 2136 261 43 79 chr15 87049174 87050005 -14330516 + HAL1 LINE L1 2 802 -1705 1749 172 3 47 chr15 87050481 87050801 -14329720 + AluJb SINE Alu 3 308 -4 622 226 0 0 chr15 87050834 87050958 -14329563 + L2 LINE L2 3189 3312 -1 2303 84 13 0 chr15 87051079 87051378 -14329143 + AluSp SINE Alu 9 311 -2 378 298 81 5 chr15 87051407 87051605 -14328916 + L1MB7 LINE L1 3866 4078 -2068 9184 183 38 33 chr15 87051765 87052522 -14327999 + L1MB7 LINE L1 3209 3961 -2223 1887 179 0 3 chr15 87052522 87052835 -14327686 + AluJo SINE Alu 1 312 0 9184 183 38 33 chr15 87052835 87055027 -14325494 + L1MB7 LINE L1 3961 6165 -19 947 170 177 117 chr15 87055107 87055390 -14325131 + AluY SINE Alu 1 300 -1 941 276 159 32 chr15 87055423 87056045 -14324476 + L1MB7 LINE L1 4415 5115 -1031 266 79 0 0 chr15 87056146 87056184 -14324337 - HERVH LTR ERV1 -7675 38 1 3679 60 0 9 chr15 87056186 87056638 -14323883 - LTR7 LTR ERV1 -2 448 1 3445 162 29 2 chr15 87056638 87057226 -14323295 + L1MB7 LINE L1 5562 6165 -19 252 94 0 57 chr15 87057512 87057565 -14322956 + L1MC5 LINE L1 7868 7917 -44 23 0 0 0 chr15 87057815 87057838 -14322683 + AT_rich Low_complexity Low_complexity 1 23 0 436 220 93 13 chr15 87057842 87057992 -14322529 - L1M4 LINE L1 -794 5352 5191 934 256 26 10 chr15 87058210 87058521 -14322000 - L2 LINE L2 -472 2842 2431 385 250 74 0 chr15 87058569 87058677 -14321844 + L2 LINE L2 3157 3272 0 186 43 0 0 chr15 87059174 87059197 -14321324 + (CAT)n Simple_repeat Simple_repeat 1 23 0 443 293 71 21 chr15 87059210 87059350 -14321171 - MIR SINE MIR 0 262 116 502 185 15 52 chr15 87059493 87059628 -14320893 - FAM SINE Alu -21 164 35 234 0 0 0 chr15 87059873 87059899 -14320622 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 432 0 0 0 chr15 87059898 87059946 -14320575 + (CA)n Simple_repeat Simple_repeat 1 48 0 332 269 62 31 chr15 87060044 87060174 -14320347 + MER91A DNA MER1_type 24 157 -39 260 204 34 0 chr15 87060195 87060260 -14320261 + MER91 DNA MER1_type 109 173 -17 260 260 71 47 chr15 87060333 87060460 -14320061 - L2 LINE L2 0 3272 3143 191 313 49 42 chr15 87060528 87060672 -14319849 - L2 LINE L2 -300 2972 2828 307 130 18 55 chr15 87060777 87060832 -14319689 - AluS SINE Alu -34 267 223 1016 259 19 104 chr15 87060957 87061136 -14319385 + L1MA1 LINE L1 5258 5451 -711 4621 92 20 13 chr15 87061136 87061252 -14319269 - L1PB1 LINE L1 -4 6147 6033 2104 101 10 0 chr15 87061252 87061548 -14318973 - AluSp SINE Alu -14 299 1 4621 92 20 13 chr15 87061548 87061788 -14318733 - L1PB1 LINE L1 -118 6033 5796 360 0 0 0 chr15 87061788 87061828 -14318693 + (TA)n Simple_repeat Simple_repeat 1 40 0 4621 92 20 13 chr15 87061828 87062152 -14318369 - L1PB1 LINE L1 -355 5796 5461 1016 259 19 104 chr15 87062152 87062695 -14317826 + L1MA1 LINE L1 5451 5817 -345 583 165 23 53 chr15 87062778 87062911 -14317610 - AluJ SINE Alu 0 312 184 806 154 0 7 chr15 87062911 87063047 -14317474 - AluJ SINE Alu -177 135 1 2132 123 3 0 chr15 87063159 87063468 -14317053 - AluSx SINE Alu 0 312 3 321 240 25 74 chr15 87063522 87063643 -14316878 + L1MC5 LINE L1 7827 7941 -20 240 308 38 53 chr15 87063664 87063797 -14316724 + MIR SINE MIR 82 212 -50 6539 163 15 33 chr15 87064811 87066032 -14314489 - L1MC1 LINE L1 -1 6332 5156 2029 142 0 3 chr15 87066032 87066343 -14314178 - AluSg SINE Alu 0 310 1 6539 163 15 33 chr15 87066343 87066838 -14313683 - L1MC1 LINE L1 -1177 5156 4654 1302 108 0 27 chr15 87066838 87067024 -14313497 + LTR57 LTR ERVL 1 181 -230 4270 261 195 17 chr15 87067574 87069698 -14310823 + L2 LINE L2 601 3097 -216 1458 242 120 11 chr15 87069786 87070237 -14310284 - HAL1 LINE L1 -662 1845 1346 1027 205 157 1 chr15 87070241 87070578 -14309943 + MER63B DNA MER1_type 1 427 -7 572 233 213 12 chr15 87070583 87070841 -14309680 - HAL1 LINE L1 -1162 1345 1036 2102 72 3 39 chr15 87070843 87071150 -14309371 - AluY SINE Alu -15 296 1 1559 190 26 3 chr15 87071200 87071505 -14309016 - AluJb SINE Alu 0 312 1 275 219 0 14 chr15 87071522 87071595 -14308926 - HAL1 LINE L1 -1594 913 842 275 227 0 15 chr15 87071607 87071673 -14308848 + Charlie2b DNA MER1_type 955 1019 -1763 602 249 108 56 chr15 87071687 87071739 -14308782 + Charlie2b DNA MER1_type 2291 2339 -523 6240 83 21 9 chr15 87071739 87073294 -14307227 + SVA Other Other 3 1380 -6 602 249 108 56 chr15 87073294 87073649 -14306872 + Charlie2b DNA MER1_type 2339 2720 -62 184 54 81 0 chr15 87074584 87074621 -14305900 + A-rich Low_complexity Low_complexity 2 41 0 2154 123 15 6 chr15 87074908 87075250 -14305271 + L1PA13 LINE L1 5816 6160 -3 1234 143 10 5 chr15 87075384 87075587 -14304934 - AluSg/x SINE Alu 0 312 109 403 123 0 62 chr15 87075588 87075669 -14304852 + AluJ/FRAM SINE Alu 231 306 -6 702 191 134 0 chr15 87076343 87076500 -14304021 - MER5B DNA MER1_type 0 178 1 361 195 122 12 chr15 87078216 87078298 -14302223 + L1ME3 LINE L1 6028 6118 -44 2121 107 0 3 chr15 87078378 87078678 -14301843 + AluSx SINE Alu 1 299 -13 303 278 14 0 chr15 87078803 87078875 -14301646 + MIR SINE MIR 76 148 -114 1642 218 147 43 chr15 87078926 87078991 -14301530 - MLT1F LTR MaLR 0 542 485 1795 158 17 7 chr15 87078991 87079283 -14301238 + AluJo SINE Alu 1 295 -17 1642 218 147 43 chr15 87079283 87079708 -14300813 - MLT1F LTR MaLR -57 485 1 2331 177 86 14 chr15 87079771 87080269 -14300252 + MER74A LTR ERVL 1 534 -24 2551 225 102 12 chr15 87080334 87081014 -14299507 - HsTC2 DNA Tc2 -1153 745 5 259 246 0 62 chr15 87081028 87081093 -14299428 + MIR SINE MIR 200 260 -2 419 273 176 11 chr15 87081406 87081582 -14298939 - MIR SINE MIR -12 250 46 796 287 108 28 chr15 87082374 87082761 -14297760 + L2 LINE L2 2087 2504 -810 316 239 12 135 chr15 87082775 87082938 -14297583 + MLT1L LTR MaLR 119 261 -354 552 213 51 72 chr15 87083009 87083102 -14297419 + MLT1L LTR MaLR 365 458 -157 3686 120 21 2 chr15 87083102 87083619 -14296902 + MER1A DNA MER1_type 1 527 0 552 213 51 72 chr15 87083619 87083753 -14296768 + MLT1L LTR MaLR 458 615 0 1987 363 126 15 chr15 87083754 87084779 -14295742 - L2 LINE L2 -1214 2100 962 386 177 32 165 chr15 87084789 87084947 -14295574 + MLT1J2 LTR MaLR 14 150 -300 474 277 28 23 chr15 87085012 87085189 -14295332 + MLT1J LTR MaLR 327 504 -7 488 283 20 40 chr15 87085198 87085396 -14295125 - L2 LINE L2 -2361 953 760 250 328 59 50 chr15 87085394 87085513 -14295008 - MIR SINE MIR -136 126 7 * 245 299 13 13 chr15 87085660 87085737 -14294784 + Tigger5 DNA MER2_type 5 81 -2242 425 143 0 0 chr15 87085777 87085840 -14294681 + Tigger5 DNA MER2_type 2261 2323 0 2233 73 3 22 chr15 87085863 87086180 -14294341 - AluY SINE Alu 0 311 1 1406 148 82 0 chr15 87088572 87088865 -14291656 - MER33 DNA MER1_type -13 311 1 2753 10 0 0 chr15 87088899 87089207 -14291314 - AluY SINE Alu -3 308 1 487 277 128 41 chr15 87089467 87089857 -14290664 + L1ME4a LINE L1 5555 5978 -143 1130 222 119 57 chr15 87089986 87090176 -14290345 + L1MC5 LINE L1 7329 7506 -455 2262 87 3 10 chr15 87090176 87090488 -14290033 + AluSx SINE Alu 1 310 -2 1130 222 119 57 chr15 87090488 87090877 -14289644 + L1MC5 LINE L1 7506 7944 -17 1814 166 0 3 chr15 87092144 87092446 -14288075 - AluJb SINE Alu -11 301 1 243 146 0 0 chr15 87092562 87092603 -14287918 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 723 124 0 0 chr15 87092628 87092733 -14287788 - FLAM_C SINE Alu -33 110 6 421 293 45 13 chr15 87092739 87093050 -14287471 - L1M4 LINE L1 -2966 3416 3096 372 317 97 83 chr15 87093135 87093570 -14286951 - L1M4 LINE L1 -3221 3161 2721 180 77 0 0 chr15 87093570 87093596 -14286925 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 833 170 0 15 chr15 87093600 87093735 -14286786 - FLAM_C SINE Alu 0 133 1 288 265 114 32 chr15 87093735 87094133 -14286388 - L1M4 LINE L1 -3656 2726 2295 1239 167 0 0 chr15 87094789 87094999 -14285522 - L1MB3 LINE L1 -249 5934 5725 401 94 0 16 chr15 87094999 87095063 -14285458 + (TTTC)n Simple_repeat Simple_repeat 1 63 0 242 28 0 28 chr15 87095063 87095099 -14285422 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 1648 175 0 7 chr15 87095106 87095386 -14285135 - AluJb SINE Alu -34 278 1 292 170 19 0 chr15 87095386 87095439 -14285082 - L1MB3 LINE L1 -449 5734 5681 2364 56 0 10 chr15 87095465 87095768 -14284753 + AluY SINE Alu 1 300 -11 201 281 203 47 chr15 87096561 87096689 -14283832 + MIR SINE MIR 42 189 -73 350 238 143 75 chr15 87097127 87097535 -14282986 - L1ME4a LINE L1 -6 6115 5667 2157 87 3 0 chr15 87097535 87097821 -14282700 - AluSp SINE Alu -18 295 9 350 238 143 75 chr15 87097821 87097903 -14282618 - L1ME4a LINE L1 -454 5667 5592 811 147 0 40 chr15 87098022 87098172 -14282349 + AluJo SINE Alu 75 218 -94 1698 140 106 15 chr15 87098192 87098371 -14282150 + L1MB2 LINE L1 5811 5972 -199 2337 88 3 0 chr15 87098371 87098679 -14281842 + AluSp SINE Alu 2 310 -3 1698 140 106 15 chr15 87098679 87098828 -14281693 + L1MB2 LINE L1 5972 6169 -2 1810 153 3 13 chr15 87098884 87099191 -14281330 + AluJb SINE Alu 1 304 -8 566 255 103 22 chr15 87100057 87100241 -14280280 - MIR SINE MIR -24 238 40 181 324 108 10 chr15 87101788 87101890 -14278631 + MIR SINE MIR 97 208 -54 251 241 0 0 chr15 87102843 87102897 -14277624 + L2 LINE L2 3141 3194 -78 307 344 16 16 chr15 87104356 87104481 -14276040 - MIR SINE MIR -105 157 33 425 230 176 0 chr15 87105316 87105464 -14275057 - MIR SINE MIR -41 221 48 1650 143 61 7 chr15 87105755 87106034 -14274487 - AluJb SINE Alu -18 294 1 273 200 189 21 chr15 87106098 87106193 -14274328 + MER63 DNA MER1_type 676 786 -276 2008 115 3 0 chr15 87106382 87106670 -14273851 - AluSq SINE Alu -24 289 1 188 305 192 34 chr15 87107066 87107243 -14273278 - L2 LINE L2 -47 3225 3021 530 109 109 69 chr15 87108377 87108478 -14272043 + LTR2B LTR ERV1 1 105 -385 761 65 0 0 chr15 87109307 87109400 -14271121 - MER41D LTR ERV1 -464 93 1 839 168 75 23 chr15 87109400 87109573 -14270948 + L1M4 LINE L1 5386 5567 -607 3556 60 0 7 chr15 87109574 87110025 -14270496 - LTR7 LTR ERV1 -2 448 1 2622 80 45 3 chr15 87110025 87110401 -14270120 - HERVH LTR ERV1 0 7713 7322 1306 129 18 36 chr15 87110399 87110623 -14269898 - HERVH LTR ERV1 -1894 5819 5600 * 4328 149 1 1 chr15 87110624 87111286 -14269235 - HERVH LTR ERV1 -2564 5149 4488 6324 86 2 2 chr15 87111288 87112142 -14268379 - HERVH LTR ERV1 -3720 3993 3140 * 10666 98 1 13 chr15 87112121 87113615 -14266906 - HERVH LTR ERV1 -4718 2995 1520 3363 13 0 5 chr15 87113615 87113996 -14266525 - L1PA3 LINE L1 0 6155 5777 3584 41 0 0 chr15 87113996 87114456 -14266065 - SVA Other Other 0 1386 960 563 269 134 9 chr15 87114696 87114912 -14265609 + MIR SINE MIR 20 262 0 2249 86 0 7 chr15 87115056 87115358 -14265163 - AluSx SINE Alu -12 300 1 2490 120 11 3 chr15 87115664 87116015 -14264506 + MLT1A1 LTR MaLR 1 354 -11 440 220 46 52 chr15 87116216 87116389 -14264132 - L3 LINE CR1 -236 1341 1170 218 200 0 0 chr15 87116857 87116897 -14263624 + (TG)n Simple_repeat Simple_repeat 2 41 0 2230 89 3 0 chr15 87117281 87117574 -14262947 + AluSp SINE Alu 1 294 -19 242 259 17 0 chr15 87117979 87118037 -14262484 - MIR SINE MIR -2 260 202 303 318 0 24 chr15 87118038 87118164 -14262357 - L1MC/D LINE L1 -2270 5538 5416 390 309 86 19 chr15 87118255 87118417 -14262104 + L1M4 LINE L1 2428 2600 -3546 236 282 69 30 chr15 87118606 87118737 -14261784 - L2 LINE L2 -59 3254 3119 264 30 0 0 chr15 87119162 87119195 -14261326 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1714 189 0 3 chr15 87123291 87123593 -14256928 + AluJb SINE Alu 1 301 -11 4082 183 43 48 chr15 87123595 87125012 -14255509 + L1MB3 LINE L1 4511 5918 -265 799 163 31 0 chr15 87125012 87125141 -14255380 + FLAM_A SINE Alu 1 133 0 4082 183 43 48 chr15 87125141 87125403 -14255118 + L1MB3 LINE L1 5918 6180 -3 1170 224 40 97 chr15 87125980 87126744 -14253777 + L1MDb LINE L1 775 1453 -4953 1697 180 7 0 chr15 87126753 87127053 -14253468 + AluJb SINE Alu 9 310 -2 224 167 48 0 chr15 87127053 87127095 -14253426 + GA-rich Low_complexity Low_complexity 1 44 0 1041 202 23 74 chr15 87127095 87127435 -14253086 + L1MDb LINE L1 1297 1730 -4676 447 278 222 8 chr15 87127436 87127702 -14252819 + L2 LINE L2 2991 3313 0 2067 113 23 0 chr15 87127769 87128069 -14252452 + AluSg SINE Alu 1 307 -3 627 212 152 0 chr15 87128444 87128576 -14251945 - AluJb SINE Alu -24 288 137 443 236 94 0 chr15 87128585 87128691 -14251830 + MER58A DNA MER1_type 46 161 0 182 356 0 0 chr15 87128744 87128789 -14251732 + L2 LINE L2 3198 3242 -30 671 317 124 15 chr15 87128854 87129185 -14251336 + L2 LINE L2 2946 3312 -1 3653 75 22 1 chr15 87129210 87129718 -14250803 + LTR6B LTR ERV1 1 558 0 3209 117 7 13 chr15 87129718 87130171 -14250350 + HERVS71 LTR ERV1 1 450 -8528 231 36 0 0 chr15 87130171 87130199 -14250322 + (TC)n Simple_repeat Simple_repeat 2 29 0 12853 113 19 8 chr15 87130199 87131628 -14248893 + HERVS71 LTR ERV1 502 1913 -7065 7989 54 1 0 chr15 87131628 87132593 -14247928 + LTR5 LTR ERVK 1 966 -3 12853 113 19 8 chr15 87132593 87134917 -14245604 + HERVS71 LTR ERV1 1913 5667 -3311 7095 104 5 3 chr15 87134911 87135859 -14244662 + HERVS71 LTR ERV1 6090 7039 -1939 * 3137 133 70 10 chr15 87135855 87136342 -14244179 + HERVS71 LTR ERV1 7141 7656 -1322 * 2060 104 3 0 chr15 87136442 87136730 -14243791 - AluY SINE Alu -18 293 5 519 217 43 67 chr15 87136989 87137290 -14243231 + L1MC/D LINE L1 5067 5364 -863 1601 174 28 7 chr15 87137290 87137578 -14242943 + AluJo SINE Alu 1 294 -18 519 217 43 67 chr15 87137578 87137655 -14242866 + L1MC/D LINE L1 5364 5441 -786 311 226 157 19 chr15 87137652 87137811 -14242710 + L1ME3 LINE L1 5869 6049 -113 * 1273 99 0 0 chr15 87137812 87137984 -14242537 - AluSq SINE Alu -7 306 135 340 169 52 0 chr15 87137984 87138061 -14242460 + L1ME3A LINE L1 6039 6119 -51 2279 83 3 13 chr15 87138078 87138390 -14242131 - AluY SINE Alu -2 309 1 663 300 97 22 chr15 87138437 87138757 -14241764 + L1MC/D LINE L1 5428 5771 -2037 786 105 0 75 chr15 87138763 87138896 -14241625 + FLAM_C SINE Alu 9 131 -12 386 232 36 9 chr15 87138901 87139013 -14241508 + L1MD3 LINE L1 7870 7984 -11 2021 125 0 0 chr15 87139027 87139331 -14241190 + AluSx SINE Alu 9 312 0 416 243 66 26 chr15 87139808 87139960 -14240561 - L2 LINE L2 0 3313 3156 2376 57 0 0 chr15 87140605 87140906 -14239615 - AluY SINE Alu -10 301 1 602 231 37 76 chr15 87140908 87141138 -14239383 + MIR SINE MIR 37 256 -6 851 224 24 0 chr15 87141199 87141369 -14239152 + MER45A DNA AcHobo 1 174 -4 30 0 0 0 chr15 87141478 87141508 -14239013 + AT_rich Low_complexity Low_complexity 1 30 0 2139 189 23 92 chr15 87141508 87142120 -14238401 + L1M4 LINE L1 3524 4093 -2053 1396 73 6 64 chr15 87142227 87142554 -14237967 - SVA Other Other -530 856 549 666 72 7 36 chr15 87142566 87142704 -14237817 - SVA Other Other -592 794 661 5171 76 28 58 chr15 87142718 87143809 -14236712 - SVA Other Other -518 868 57 816 46 0 0 chr15 87143809 87143918 -14236603 + (GGGAGA)n Simple_repeat Simple_repeat 1 109 0 43334 39 23 3 chr15 87143950 87149615 -14230906 - L1P1 LINE L1 -371 5784 5 9756 91 9 16 chr15 87149621 87151022 -14229499 - HERVH LTR ERV1 -6183 1530 140 2482 123 42 60 chr15 87151122 87151569 -14228952 + LTR2B LTR ERV1 52 490 0 275 233 0 0 chr15 87151885 87151945 -14228576 + MIR SINE MIR 53 112 -96 216 292 34 34 chr15 87152011 87152100 -14228421 - MER5A DNA MER1_type -46 143 55 183 275 72 0 chr15 87152969 87153038 -14227483 + MIR SINE MIR 127 200 -62 2029 57 25 18 chr15 87153249 87153559 -14226962 + AluSq SINE Alu 1 312 0 198 217 349 46 chr15 87153589 87153764 -14226757 - MIR SINE MIR 0 262 35 2235 113 0 0 chr15 87154241 87154550 -14225971 - AluSg SINE Alu -1 309 1 545 279 97 4 chr15 87154552 87154778 -14225743 + Charlie2 DNA MER1_type 72 318 -2464 586 168 65 0 chr15 87154795 87154902 -14225619 + Charlie2 DNA MER1_type 1879 1992 -870 1284 150 43 17 chr15 87154903 87155137 -14225384 + AluJo SINE Alu 43 282 -30 228 67 0 0 chr15 87155140 87155170 -14225351 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 1333 229 94 58 chr15 87155190 87155726 -14224795 + Charlie2 DNA MER1_type 2033 2548 -314 2141 190 63 79 chr15 87155726 87156372 -14224149 - MER92B LTR ERV1 0 636 1 1333 229 94 58 chr15 87156372 87156404 -14224117 + Charlie2 DNA MER1_type 2548 2577 -285 1850 151 3 0 chr15 87156404 87156702 -14223819 + AluSx SINE Alu 1 299 -13 833 203 18 18 chr15 87156702 87156865 -14223656 + AluJo/FRAM SINE Alu 137 299 -3 1333 229 94 58 chr15 87156865 87156953 -14223568 + Charlie2 DNA MER1_type 2576 2715 -147 1874 178 52 6 chr15 87156955 87157304 -14223217 - MER47A DNA MER2_type 0 366 2 210 233 0 0 chr15 87157460 87157503 -14223018 + MIR SINE MIR 78 120 -88 2005 137 0 0 chr15 87157565 87157865 -14222656 + AluSg SINE Alu 1 300 -10 275 218 287 10 chr15 87158180 87158281 -14222240 + MER5A DNA MER1_type 1 129 -60 306 226 83 48 chr15 87158320 87158404 -14222117 + MER5A DNA MER1_type 103 189 0 533 284 27 55 chr15 87158741 87158793 -14221728 - MER5B DNA MER1_type 0 178 126 1906 52 94 8 chr15 87158793 87159055 -14221466 + AluY SINE Alu 1 286 -21 218 0 61 0 chr15 87159055 87159088 -14221433 + (CAA)n Simple_repeat Simple_repeat 2 180 0 533 284 27 55 chr15 87159092 87159222 -14221299 - MER5B DNA MER1_type -52 126 1 1672 184 3 3 chr15 87159457 87159739 -14220782 + AluJb SINE Alu 1 282 -30 199 0 0 0 chr15 87159739 87159761 -14220760 + (TAAA)n Simple_repeat Simple_repeat 3 72 0 234 281 22 45 chr15 87159777 87159866 -14220655 + MIR3 SINE MIR 74 160 -48 615 301 29 17 chr15 87160129 87160302 -14220219 - MIR SINE MIR -66 196 22 302 267 27 0 chr15 87160737 87160812 -14219709 - MIR SINE MIR -143 119 43 1831 153 11 3 chr15 87161056 87161385 -14219136 + AluSx SINE Alu 1 331 0 1642 138 67 67 chr15 87162341 87162639 -14217882 - AluJb SINE Alu -10 302 5 182 299 130 26 chr15 87163994 87164071 -14216450 + L2 LINE L2 3200 3284 -29 189 321 76 38 chr15 87165669 87165800 -14214721 + MIR SINE MIR 39 174 -88 25 51 0 0 chr15 87166181 87166220 -14214301 + AT_rich Low_complexity Low_complexity 1 39 0 206 152 0 22 chr15 87166221 87166267 -14214254 + A-rich Low_complexity Low_complexity 3 47 0 186 133 0 0 chr15 87167702 87167732 -14212789 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 381 295 79 0 chr15 87169941 87170080 -14210441 + Charlie8 DNA MER1_type 2 151 -2266 828 164 0 8 chr15 87170296 87170430 -14210091 + FLAM_C SINE Alu 1 133 0 2498 66 0 3 chr15 87171001 87171303 -14209218 - AluY SINE Alu -10 301 1 826 165 97 0 chr15 87171983 87172159 -14208362 + L1PB3 LINE L1 5960 6152 -2 2188 117 0 3 chr15 87172364 87172680 -14207841 + AluSq SINE Alu 1 315 0 490 310 66 66 chr15 87173368 87173790 -14206731 + L1MC4a LINE L1 5444 5865 -1943 3278 124 24 20 chr15 87174029 87174571 -14205950 - L1MB2 LINE L1 0 6171 5628 254 136 251 26 chr15 87175688 87175773 -14204748 + Charlie8 DNA MER1_type 175 277 -2140 833 293 92 66 chr15 87175857 87176500 -14204021 - L2 LINE L2 0 3272 2606 191 235 59 0 chr15 87176738 87176789 -14203732 + MIR SINE MIR 209 262 0 328 198 111 25 chr15 87177317 87177398 -14203123 - MIR SINE MIR -18 244 157 413 333 118 5 chr15 87177530 87177716 -14202805 - MIR SINE MIR -36 226 20 371 276 141 12 chr15 87177928 87178098 -14202423 + MIR SINE MIR 56 247 -15 558 306 100 9 chr15 87179310 87179510 -14201011 - MIR SINE MIR 0 262 47 2467 67 0 41 chr15 87179510 87179826 -14200695 + AluY SINE Alu 1 303 -8 558 306 100 9 chr15 87179826 87179862 -14200659 - MIR SINE MIR -215 47 16 294 219 175 29 chr15 87181277 87181414 -14199107 - L2 LINE L2 -10 3303 3147 * 672 225 163 65 chr15 87181399 87181439 -14199082 - L2 LINE L2 -587 2727 2692 1986 82 4 12 chr15 87181439 87181695 -14198826 + AluSx SINE Alu 49 302 -10 672 225 163 65 chr15 87181695 87182040 -14198481 - L2 LINE L2 -622 2692 2304 314 220 0 0 chr15 87183157 87183216 -14197305 + MER5A DNA MER1_type 51 109 -80 408 217 47 0 chr15 87183382 87183488 -14197033 - LTR67 LTR ERVL 0 557 447 324 228 258 18 chr15 87184398 87184565 -14195956 - LTR16A LTR ERVL -18 432 226 257 209 81 70 chr15 87184593 87184679 -14195842 - LTR16A LTR ERVL -357 93 7 1012 111 0 21 chr15 87185029 87185173 -14195348 + AluSq/x SINE Alu 1 141 -171 483 170 40 10 chr15 87185845 87185945 -14194576 + MSTD LTR MaLR 1 103 -325 276 154 0 0 chr15 87185982 87186034 -14194487 + CT-rich Low_complexity Low_complexity 1 52 0 853 164 121 35 chr15 87186040 87186247 -14194274 + MSTD LTR MaLR 204 396 0 349 299 39 19 chr15 87186312 87186466 -14194055 + L2 LINE L2 2596 2752 -562 1192 206 87 61 chr15 87186675 87186840 -14193681 - MLT1D LTR MaLR -2 503 344 3431 160 45 5 chr15 87186840 87187434 -14193087 + LTR26E LTR ERV1 1 618 -4 1192 206 87 61 chr15 87187434 87187647 -14192874 - MLT1D LTR MaLR -161 344 115 801 187 0 8 chr15 87187658 87187792 -14192729 - FLAM_A SINE Alu 0 133 1 441 167 0 0 chr15 87187813 87187879 -14192642 + AluJ/FLAM SINE Alu 2 67 -245 259 328 16 32 chr15 87187887 87188012 -14192509 + L2 LINE L2 2933 3055 -217 380 234 103 28 chr15 87188659 87188766 -14191755 - MIR3 SINE MIR -82 126 12 21 57 0 0 chr15 87189542 87189577 -14190944 + AT_rich Low_complexity Low_complexity 1 35 0 311 299 94 50 chr15 87189658 87189859 -14190662 - L1MC4a LINE L1 -1742 6066 5857 371 173 52 13 chr15 87189863 87189952 -14190569 - L1MC4a LINE L1 -367 5817 5720 619 198 126 6 chr15 87190025 87190192 -14190329 - MER3 DNA MER1_type -22 187 1 323 305 47 8 chr15 87190197 87190325 -14190196 - L1MC4a LINE L1 -2154 5654 5522 184 161 179 54 chr15 87190746 87190802 -14189719 + L2 LINE L2 1900 1962 -1352 2522 69 0 19 chr15 87191774 87192093 -14188428 - AluSp SINE Alu 0 313 1 1595 131 113 14 chr15 87193602 87193877 -14186644 + AluJo SINE Alu 4 305 -7 386 278 200 9 chr15 87193919 87194149 -14186372 + LTR33 LTR ERVL 1 274 -247 277 238 129 0 chr15 87194209 87194310 -14186211 + LTR33 LTR ERVL 404 517 -4 23 0 0 0 chr15 87195060 87195083 -14185438 + AT_rich Low_complexity Low_complexity 1 23 0 2081 126 23 0 chr15 87195083 87195385 -14185136 - AluSx SINE Alu -3 309 1 363 276 222 5 chr15 87197770 87197973 -14182548 + MIR SINE MIR 5 251 -11 2267 87 38 0 chr15 87198120 87198409 -14182112 - AluSc SINE Alu -9 300 1 1060 143 17 17 chr15 87198411 87198586 -14181935 - AluJo SINE Alu -14 298 124 890 167 32 61 chr15 87199270 87199516 -14181005 - L1MC5 LINE L1 -48 7913 7675 2425 78 3 0 chr15 87199525 87199819 -14180702 - AluSp SINE Alu -18 295 1 2134 105 48 3 chr15 87199890 87200185 -14180336 - AluJo SINE Alu 0 312 5 317 313 104 12 chr15 87201744 87201907 -14178614 - HAL1 LINE L1 -105 2402 2225 1130 185 32 5 chr15 87202110 87202326 -14178195 - MER58A DNA MER1_type -1 223 2 236 282 141 0 chr15 87202335 87202406 -14178115 + MER5B DNA MER1_type 1 81 -97 4101 228 142 42 chr15 87203004 87203938 -14176583 + L2 LINE L2 1234 2363 -951 2200 107 27 0 chr15 87203938 87204237 -14176284 - AluSg SINE Alu -3 307 1 4101 228 142 42 chr15 87204237 87204743 -14175778 + L2 LINE L2 2363 2817 -497 546 219 15 29 chr15 87204777 87204914 -14175607 + L2 LINE L2 3139 3273 -40 545 320 62 75 chr15 87204941 87205235 -14175286 + L2 LINE L2 2728 3055 -217 2187 139 0 0 chr15 87205235 87205544 -14174977 - AluSx SINE Alu -3 309 1 545 320 62 75 chr15 87205544 87205757 -14174764 + L2 LINE L2 3055 3269 -3 199 289 0 0 chr15 87206004 87206049 -14174472 - L2 LINE L2 0 3313 3269 * 387 224 176 36 chr15 87206022 87206187 -14174334 - MIR SINE MIR -44 218 31 264 247 47 65 chr15 87207148 87207251 -14173270 + MIR SINE MIR 68 143 -65 196 289 66 13 chr15 87207345 87207421 -14173100 - L2 LINE L2 -52 3220 3141 537 337 14 91 chr15 87207728 87208223 -14172298 - L2 LINE L2 -2 3311 2855 184 277 43 0 chr15 87209080 87209127 -14171394 - MIR SINE MIR -111 151 103 221 0 35 0 chr15 87209788 87209817 -14170704 + (TTTTTA)n Simple_repeat Simple_repeat 1 30 0 958 195 45 63 chr15 87210092 87210313 -14170208 - MER20 DNA MER1_type -1 218 2 220 338 40 0 chr15 87210377 87210451 -14170070 + L2 LINE L2 2682 2758 -556 306 391 64 6 chr15 87210660 87210816 -14169705 + L2 LINE L2 3104 3268 -4 766 283 77 30 chr15 87211382 87211746 -14168775 - L1MC/D LINE L1 -2144 5664 5284 1059 252 162 45 chr15 87212062 87212680 -14167841 - L1MC4a LINE L1 -1804 6004 5315 590 181 0 35 chr15 87212693 87212809 -14167712 - FLAM_A SINE Alu 0 142 31 324 284 63 59 chr15 87212810 87213064 -14167457 - L1MC4a LINE L1 -854 5292 5038 1771 144 0 19 chr15 87213098 87213369 -14167152 + AluSx SINE Alu 30 295 -17 347 319 14 0 chr15 87213448 87213589 -14166932 - L1P LINE L1 -1126 5020 4878 257 253 99 33 chr15 87215016 87215107 -14165414 - MIR SINE MIR -86 176 80 303 163 0 0 chr15 87215205 87215254 -14165267 + L2 LINE L2 3262 3310 -3 198 338 62 0 chr15 87316780 87316860 -14063661 - L3 LINE CR1 -117 1460 1376 195 42 0 0 chr15 87317537 87317561 -14062960 + (GGA)n Simple_repeat Simple_repeat 2 25 0 969 239 42 0 chr15 87318558 87318771 -14061750 + MIR SINE MIR 14 235 -27 2325 85 6 32 chr15 87318772 87319088 -14061433 - AluSq SINE Alu -4 309 2 212 238 0 0 chr15 87319098 87319140 -14061381 - L2 LINE L2 -19 3253 3212 350 285 54 41 chr15 87319340 87319561 -14060960 - L1MC5 LINE L1 -75 7886 7663 2508 80 0 0 chr15 87319577 87319876 -14060645 - AluSc SINE Alu -9 300 2 22 0 0 0 chr15 87320440 87320462 -14060059 + AT_rich Low_complexity Low_complexity 1 22 0 1791 162 0 28 chr15 87320750 87321040 -14059481 + AluJo SINE Alu 1 282 -30 207 69 0 0 chr15 87321045 87321074 -14059447 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2069 116 59 3 chr15 87321122 87321442 -14059079 - MER44D DNA MER2_type -1 608 1 1771 141 15 4 chr15 87321949 87322211 -14058310 + AluJo SINE Alu 3 267 -45 1387 159 13 21 chr15 87322316 87322384 -14058137 + AluSq SINE Alu 70 137 -176 2390 80 3 3 chr15 87322384 87322683 -14057838 + AluSc SINE Alu 1 299 -10 1387 159 13 21 chr15 87322683 87322853 -14057668 + AluSq SINE Alu 137 306 -7 833 149 0 8 chr15 87322906 87323040 -14057481 + FLAM_C SINE Alu 1 133 -10 266 198 157 81 chr15 87323046 87323090 -14057431 - L1ME LINE L1 -302 5819 5780 2254 103 7 0 chr15 87323090 87323382 -14057139 + AluSq SINE Alu 1 294 -19 266 198 157 81 chr15 87323382 87323509 -14057012 - L1ME LINE L1 -341 5780 5635 265 339 55 31 chr15 87323532 87323659 -14056862 + L3 LINE CR1 1445 1574 -3 23 68 0 0 chr15 87324565 87324609 -14055912 + GC_rich Low_complexity Low_complexity 1 44 0 21 82 0 0 chr15 87325241 87325290 -14055231 + GC_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr15 87325370 87325398 -14055123 + GC_rich Low_complexity Low_complexity 1 28 0 372 231 91 85 chr15 87325648 87325847 -14054674 + MIR SINE MIR 63 262 0 346 180 16 0 chr15 87326788 87326849 -14053672 + Tigger3(Golem) DNA MER2_type 19 80 -2949 570 171 38 0 chr15 87326980 87327085 -14053436 + Tigger3(Golem) DNA MER2_type 2929 3037 0 1764 191 7 10 chr15 87328188 87328492 -14052029 - AluJo SINE Alu -4 308 6 316 243 97 135 chr15 87329035 87329147 -14051374 - MER5B DNA MER1_type 0 178 74 2199 107 0 0 chr15 87329147 87329427 -14051094 - AluSg SINE Alu -23 287 8 316 243 97 135 chr15 87329427 87329499 -14051022 - MER5B DNA MER1_type -104 74 1 2356 63 0 0 chr15 87329816 87330101 -14050420 + AluY SINE Alu 27 311 0 1226 155 74 129 chr15 87330209 87330518 -14050003 + AluJb SINE Alu 6 297 -15 258 340 19 45 chr15 87330538 87330694 -14049827 - L2 LINE L2 -662 2652 2501 1379 188 102 12 chr15 87332016 87332351 -14048170 - MLT1A1 LTR MaLR 0 365 1 903 115 0 0 chr15 87332584 87332706 -14047815 + AluSp/q SINE Alu 181 302 -11 276 192 128 0 chr15 87332715 87332793 -14047728 + L1ME LINE L1 4184 4271 -1875 1064 50 0 0 chr15 87332794 87332913 -14047608 + AluY SINE Alu 1 119 -192 210 37 0 0 chr15 87332913 87332940 -14047581 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2139 221 36 30 chr15 87332940 87333525 -14046996 + L1ME LINE L1 4258 4849 -1297 2298 107 0 3 chr15 87333525 87333825 -14046696 - AluSx SINE Alu -13 299 1 2139 221 36 30 chr15 87333825 87333877 -14046644 + L1ME LINE L1 4849 4899 -1247 419 269 58 54 chr15 87333884 87334107 -14046414 + L1M4 LINE L1 2558 2781 -3365 237 264 78 63 chr15 87334123 87334420 -14046101 + L1M4 LINE L1 2913 3217 -2929 2432 95 0 0 chr15 87334420 87334725 -14045796 + AluSq SINE Alu 1 305 -8 237 264 78 63 chr15 87334725 87334760 -14045761 + L1M4 LINE L1 3217 3250 -2896 526 238 103 11 chr15 87334838 87335023 -14045498 - L1M4 LINE L1 -1197 4949 4748 736 98 0 0 chr15 87335177 87335279 -14045242 - AluSg/x SINE Alu -3 306 205 22 0 0 0 chr15 87335393 87335415 -14045106 + AT_rich Low_complexity Low_complexity 1 22 0 416 269 103 9 chr15 87335999 87336222 -14044299 + L1ME LINE L1 5562 5805 -316 31 0 0 0 chr15 87336370 87336401 -14044120 + AT_rich Low_complexity Low_complexity 1 31 0 1740 148 4 7 chr15 87337374 87337644 -14042877 - AluSx SINE Alu -43 269 1 1676 204 49 60 chr15 87337703 87338271 -14042250 + L1M4 LINE L1 4407 4968 -1178 475 271 79 48 chr15 87338281 87338617 -14041904 - L1M4 LINE L1 -2847 3299 2920 295 189 31 15 chr15 87338758 87338843 -14041678 - MLT1J LTR MaLR -13 536 477 333 242 30 19 chr15 87339049 87339187 -14041334 - MLT1H LTR MaLR -267 162 1 1407 238 78 28 chr15 87339191 87339615 -14040906 - MLT1J LTR MaLR -66 445 1 609 288 120 33 chr15 87339616 87339659 -14040862 - L1ME LINE L1 -397 5765 5727 1986 138 0 3 chr15 87339659 87339949 -14040572 - AluSq SINE Alu -24 289 1 609 288 120 33 chr15 87339949 87340297 -14040224 - L1ME LINE L1 -435 5727 5340 460 214 24 0 chr15 87340299 87340425 -14040096 + CT-rich Low_complexity Low_complexity 1 129 0 970 162 11 32 chr15 87340436 87340621 -14039900 - FRAM SINE Alu -3 173 1 431 240 10 66 chr15 87340626 87340822 -14039699 - L1ME LINE L1 -856 5290 5106 1909 147 0 3 chr15 87340976 87341283 -14039238 - AluJb SINE Alu 0 306 1 229 125 78 31 chr15 87341291 87341355 -14039166 - L1 LINE L1 -1149 4997 4931 189 0 0 0 chr15 87341396 87341417 -14039104 + (TC)n Simple_repeat Simple_repeat 2 22 0 1822 163 18 0 chr15 87341418 87341695 -14038826 - AluJo SINE Alu -30 282 1 328 285 42 26 chr15 87341869 87342062 -14038459 - L1 LINE L1 -1338 4808 4613 375 299 161 83 chr15 87342071 87342429 -14038092 - L1MC4 LINE L1 -877 6931 6566 1762 171 7 16 chr15 87342534 87342838 -14037683 - AluJb SINE Alu -11 301 1 574 339 94 0 chr15 87342969 87343246 -14037275 - HsTC2 DNA Tc2 -1034 864 562 326 153 31 3 chr15 87343311 87343376 -14037145 + MLT1L LTR MaLR 152 235 -353 348 292 42 7 chr15 87343521 87343665 -14036856 + MLT1L LTR MaLR 459 607 -8 187 258 90 67 chr15 87345174 87345263 -14035258 - L2 LINE L2 -45 3227 3137 530 90 13 0 chr15 87345456 87345534 -14034987 + AluSp/q SINE Alu 219 297 -16 261 293 0 0 chr15 87345536 87345611 -14034910 - MER113 DNA MER1_type? -414 107 33 2210 111 3 0 chr15 87346300 87346588 -14033933 - AluSx SINE Alu -23 289 1 1966 193 15 15 chr15 87346681 87347070 -14033451 - MLT1B LTR MaLR 0 390 2 1935 133 0 56 chr15 87347083 87347405 -14033116 - AluSx SINE Alu -8 304 1 1017 233 45 5 chr15 87347528 87347751 -14032770 + MIR SINE MIR 1 232 -30 220 146 24 0 chr15 87347764 87347805 -14032716 + (TTA)n Simple_repeat Simple_repeat 1 42 0 41225 32 28 1 chr15 87347806 87353789 -14026732 - L1PA3 LINE L1 -4 6151 6 2320 105 0 0 chr15 87353797 87354091 -14026430 - AluSx SINE Alu -18 294 1 1680 164 43 69 chr15 87354508 87354767 -14025754 - L1MDa LINE L1 -4275 2265 2022 2322 111 0 0 chr15 87354767 87355074 -14025447 - AluSp SINE Alu -6 307 1 1680 164 43 69 chr15 87355074 87355278 -14025243 - L1MDa LINE L1 -4518 2022 1814 2579 220 81 25 chr15 87355278 87355877 -14024644 - L1MDa LINE L1 -5547 993 187 1732 162 3 73 chr15 87355877 87356004 -14024517 + AluJo SINE Alu 1 135 -177 2020 117 3 23 chr15 87356004 87356303 -14024218 + AluSq SINE Alu 5 297 -16 1732 162 3 73 chr15 87356303 87356503 -14024018 + AluJo SINE Alu 135 305 -7 2579 220 81 25 chr15 87356503 87356667 -14023854 - L1MDa LINE L1 -6353 187 34 7474 38 0 22 chr15 87356718 87358413 -14022108 + L1PA5 LINE L1 4504 6154 0 293 277 187 13 chr15 87359020 87359048 -14021473 - MIR SINE MIR -79 183 161 2584 68 3 3 chr15 87359048 87359359 -14021162 - AluSp SINE Alu 0 313 3 293 277 187 13 chr15 87359359 87359485 -14021036 - MIR SINE MIR -101 161 2 651 241 38 0 chr15 87359866 87360024 -14020497 - MER45A DNA AcHobo -14 164 1 191 222 0 0 chr15 87360153 87360189 -14020332 + MIR3 SINE MIR 124 159 -49 514 241 69 21 chr15 87360190 87360335 -14020186 - MER5B DNA MER1_type 0 178 27 1689 219 23 25 chr15 87362011 87362481 -14018040 + L1ME2 LINE L1 5686 6154 -10 2203 120 7 0 chr15 87362493 87362793 -14017728 + AluSg SINE Alu 1 302 -8 237 233 75 44 chr15 87362819 87362978 -14017543 + L1MC4 LINE L1 7826 7989 -53 785 206 0 0 chr15 87363546 87363677 -14016844 - FLAM_A SINE Alu 0 133 3 1113 185 66 127 chr15 87364010 87364309 -14016212 - MLT1C LTR MaLR 0 467 152 2389 91 3 0 chr15 87364309 87364607 -14015914 - AluSq SINE Alu -14 299 1 3151 114 37 8 chr15 87364615 87365098 -14015423 - L1PA11 LINE L1 -1 6173 5677 1113 185 66 127 chr15 87365098 87365286 -14015235 - MLT1C LTR MaLR -322 145 1 312 308 45 23 chr15 87365306 87365439 -14015082 - MIR SINE MIR -46 216 81 650 125 0 0 chr15 87365760 87365848 -14014673 + AluJ/FLAM SINE Alu 1 88 -224 355 333 28 42 chr15 87365968 87366181 -14014340 - L1ME4a LINE L1 -69 6052 5843 2180 108 30 7 chr15 87366264 87366560 -14013961 + AluSq SINE Alu 1 303 -10 498 276 55 97 chr15 87366773 87367057 -14013464 - MLT1J LTR MaLR -49 462 202 1834 165 6 19 chr15 87367057 87367373 -14013148 + AluJb SINE Alu 1 312 0 498 276 55 97 chr15 87367373 87367541 -14012980 - MLT1J LTR MaLR -309 202 29 1747 178 0 36 chr15 87367548 87367851 -14012670 - AluJo SINE Alu -20 292 1 338 211 40 9 chr15 87367851 87367942 -14012579 - MIR SINE MIR -46 162 67 2374 98 3 0 chr15 87367943 87368240 -14012281 - AluSp SINE Alu -15 298 1 2531 194 22 48 chr15 87368397 87368626 -14011895 + L1M4 LINE L1 2376 2609 -3537 2474 89 0 0 chr15 87368626 87368928 -14011593 + AluSx SINE Alu 1 302 -10 2531 194 22 48 chr15 87368928 87369385 -14011136 + L1M4 LINE L1 2609 3044 -3102 1787 183 0 10 chr15 87369388 87369716 -14010805 + AluJb SINE Alu 1 312 0 268 214 10 10 chr15 87369716 87369814 -14010707 + (TA)n Simple_repeat Simple_repeat 1 98 0 2153 85 0 4 chr15 87369851 87370123 -14010398 + AluY SINE Alu 24 294 -17 1437 245 44 11 chr15 87370128 87370561 -14009960 + L1M4 LINE L1 4414 4860 -1286 23 33 0 0 chr15 87370633 87370663 -14009858 + AT_rich Low_complexity Low_complexity 1 30 0 2353 112 0 0 chr15 87370703 87371016 -14009505 - AluSq SINE Alu 0 313 1 2334 113 0 0 chr15 87371020 87371321 -14009200 - AluSx SINE Alu -11 301 1 2336 89 3 0 chr15 87371324 87371615 -14008906 - AluSp SINE Alu -12 301 10 2631 49 16 0 chr15 87372226 87372532 -14007989 - AluY SINE Alu 0 311 1 278 221 132 29 chr15 87372922 87373058 -14007463 + L2 LINE L2 1280 1429 -1885 974 285 146 37 chr15 87373062 87373603 -14006918 + L2 LINE L2 150 749 -2565 364 155 0 14 chr15 87373605 87373676 -14006845 + MLT1J LTR MaLR 109 178 -333 326 182 0 15 chr15 87373976 87374042 -14006479 + MLT1J LTR MaLR 1 65 -446 636 253 44 101 chr15 87374097 87374505 -14006016 + L2 LINE L2 1606 1990 -1324 2255 108 3 13 chr15 87374572 87374877 -14005644 + AluSq SINE Alu 1 302 -11 2325 101 0 7 chr15 87374879 87375185 -14005336 + AluSc SINE Alu 4 307 -2 407 284 44 16 chr15 87375187 87375370 -14005151 - L1MC5 LINE L1 -68 7893 7706 2357 129 17 0 chr15 87375451 87375808 -14004713 - L1PA16 LINE L1 -9 6157 5795 282 228 11 43 chr15 87375808 87375871 -14004650 + L2 LINE L2 1985 2046 -1268 1866 184 30 30 chr15 87375871 87376090 -14004431 - MLT1A1 LTR MaLR 0 365 144 1688 179 10 27 chr15 87376090 87376386 -14004135 - AluJo SINE Alu -16 296 6 1866 184 30 30 chr15 87376386 87376531 -14003990 - MLT1A1 LTR MaLR -220 145 1 282 228 11 43 chr15 87376531 87376559 -14003962 + L2 LINE L2 2046 2073 -1241 702 242 131 64 chr15 87376566 87376660 -14003861 + L2 LINE L2 2186 2272 -1042 2217 133 0 0 chr15 87376660 87376962 -14003559 - AluSx SINE Alu -10 302 1 702 242 131 64 chr15 87376962 87377255 -14003266 + L2 LINE L2 2272 2599 -715 424 158 128 30 chr15 87377348 87377481 -14003040 - Charlie7 DNA MER1_type -50 2562 2417 * 1214 234 21 81 chr15 87377473 87377829 -14002692 - Charlie7 DNA MER1_type -1890 722 401 2591 80 3 0 chr15 87377829 87378141 -14002380 - AluSp SINE Alu 0 313 1 1214 234 21 81 chr15 87378141 87378263 -14002258 - Charlie7 DNA MER1_type -2211 401 273 301 234 19 47 chr15 87378265 87378372 -14002149 - Charlie7 DNA MER1_type -2502 110 7 632 291 36 30 chr15 87378399 87378809 -14001712 + L2 LINE L2 2626 3030 -242 245 270 101 0 chr15 87378998 87379087 -14001434 - L1ME LINE L1 -452 5669 5572 28 29 0 0 chr15 87379602 87379637 -14000884 + GC_rich Low_complexity Low_complexity 1 35 0 24 67 0 0 chr15 87379683 87379728 -14000793 + GC_rich Low_complexity Low_complexity 1 45 0 248 311 14 27 chr15 87380620 87380694 -13999827 + L2 LINE L2 2943 3015 -257 266 202 73 28 chr15 87381006 87381115 -13999406 + L1ME3A LINE L1 5851 5964 -206 2217 70 7 47 chr15 87381470 87381769 -13998752 - AluSq SINE Alu -16 297 11 22 0 0 0 chr15 87381777 87381799 -13998722 + AT_rich Low_complexity Low_complexity 1 22 0 2050 124 10 7 chr15 87381960 87382250 -13998271 + AluSx SINE Alu 1 291 -21 594 299 33 54 chr15 87383966 87384058 -13996463 + L1MC4a LINE L1 5564 5656 -2152 255 61 0 0 chr15 87384058 87384091 -13996430 + (TA)n Simple_repeat Simple_repeat 2 34 0 594 299 33 54 chr15 87384091 87384329 -13996192 + L1MC4a LINE L1 5656 5887 -1921 236 197 91 0 chr15 87384758 87384824 -13995697 + MARNA DNA Mariner 44 115 -471 439 296 67 80 chr15 87384883 87385285 -13995236 - MARNA DNA Mariner -141 445 49 24 0 0 0 chr15 87385292 87385316 -13995205 + GC_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr15 87385489 87385516 -13995005 + GC_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr15 87385554 87385589 -13994932 + GC_rich Low_complexity Low_complexity 1 35 0 445 234 48 48 chr15 87387043 87387188 -13993333 + MIR SINE MIR 61 205 -57 219 304 0 0 chr15 87387360 87387439 -13993082 + CT-rich Low_complexity Low_complexity 3 81 0 2004 245 40 2 chr15 87387678 87388233 -13992288 - L1ME3 LINE L1 -2 6160 5585 345 258 135 27 chr15 87390455 87390679 -13989842 + MIR SINE MIR 1 255 -7 313 274 53 0 chr15 87391578 87391673 -13988848 + MIR SINE MIR 84 183 -79 192 135 0 0 chr15 87392866 87392903 -13987618 + (CAGA)n Simple_repeat Simple_repeat 1 37 0 690 279 152 27 chr15 87393953 87393991 -13986530 - L3 LINE CR1 -68 1509 1477 1471 209 54 0 chr15 87393991 87394287 -13986234 - AluJo SINE Alu 0 312 1 690 279 152 27 chr15 87394287 87394624 -13985897 - L3 LINE CR1 -100 1477 1087 1421 149 0 61 chr15 87394624 87394886 -13985635 + AluJo SINE Alu 61 306 -6 1284 229 30 30 chr15 87395071 87395373 -13985148 + AluJo SINE Alu 1 302 0 644 302 40 20 chr15 87395408 87395610 -13984911 - MIR SINE MIR -10 252 47 324 324 23 17 chr15 87395625 87395798 -13984723 + L1MC5 LINE L1 7758 7931 -30 2428 87 7 0 chr15 87395984 87396293 -13984228 - AluY SINE Alu 0 311 1 2252 106 0 26 chr15 87397494 87397806 -13982715 - AluSx SINE Alu -2 310 7 1153 86 0 0 chr15 87397807 87397946 -13982575 - AluSq/x SINE Alu -174 139 1 2259 204 74 19 chr15 87398057 87398415 -13982106 - L1MEc LINE L1 -3382 2833 2496 2502 66 0 16 chr15 87398415 87398720 -13981801 - AluY SINE Alu -11 300 1 2259 204 74 19 chr15 87398720 87399416 -13981105 - L1MEc LINE L1 -3719 2496 1741 1130 177 150 31 chr15 87399416 87399670 -13980851 - AluJb SINE Alu 0 312 29 752 178 23 8 chr15 87399860 87399989 -13980532 + FLAM_A SINE Alu 1 131 -2 192 200 0 0 chr15 87400031 87400081 -13980440 + CT-rich Low_complexity Low_complexity 2 51 0 1666 186 0 7 chr15 87400082 87400367 -13980154 - AluJb SINE Alu -24 288 6 251 225 214 11 chr15 87402124 87402213 -13978308 + L2 LINE L2 3166 3272 0 190 413 33 0 chr15 87402495 87402616 -13977905 + L3 LINE CR1 1453 1577 0 1896 123 32 21 chr15 87403413 87403697 -13976824 - AluJo SINE Alu -21 291 5 235 246 0 46 chr15 87403824 87403889 -13976632 + MIR3 SINE MIR 8 69 -139 1427 156 159 0 chr15 87407482 87407765 -13972756 + MER7A DNA MER2_type 2 327 -19 844 181 143 0 chr15 87408549 87408731 -13971790 + MER20 DNA MER1_type 2 209 -10 1057 158 0 0 chr15 87409776 87409940 -13970581 - FRAM SINE Alu -2 164 1 2313 102 0 43 chr15 87410648 87410971 -13969550 + AluSx SINE Alu 1 309 -3 298 216 333 18 chr15 87411047 87411158 -13969363 + MIR3 SINE MIR 49 194 -14 2018 138 0 6 chr15 87412653 87412964 -13967557 - AluSc SINE Alu 0 309 1 2237 120 0 0 chr15 87414131 87414432 -13966089 - AluSg SINE Alu -9 301 1 2394 100 3 0 chr15 87414445 87414755 -13965766 - AluY SINE Alu 0 311 1 631 228 128 28 chr15 87414911 87415122 -13965399 + MIR SINE MIR 2 233 -29 2364 59 28 3 chr15 87415590 87415880 -13964641 + AluSx SINE Alu 1 297 -15 2158 74 7 7 chr15 87417179 87417486 -13963035 + AluSx SINE Alu 1 307 0 2072 272 54 38 chr15 87417519 87418170 -13962351 - MER115 DNA AcHobo 0 693 33 218 302 23 47 chr15 87418182 87418268 -13962253 - L2 LINE L2 -11 3261 3178 2138 117 10 3 chr15 87418350 87418649 -13961872 - AluSq SINE Alu -12 301 1 1729 213 58 16 chr15 87418651 87419079 -13961442 - L1ME1 LINE L1 -201 5965 5520 * 4293 206 59 36 chr15 87419076 87419250 -13961271 - L1ME LINE L1 -397 5769 5600 2538 135 52 32 chr15 87419250 87419693 -13960828 - LTR47A LTR ERVL 0 452 1 4293 206 59 36 chr15 87419693 87419986 -13960535 - L1ME LINE L1 -566 5600 5315 2243 72 55 3 chr15 87419986 87420276 -13960245 - AluY SINE Alu -6 305 1 4293 206 59 36 chr15 87420276 87421086 -13959435 - L1ME LINE L1 -851 5315 4440 839 221 0 7 chr15 87421086 87421240 -13959281 - FRAM SINE Alu -13 153 1 4293 206 59 36 chr15 87421240 87421509 -13959012 - L1ME LINE L1 -1726 4440 4179 2535 216 9 43 chr15 87421521 87421555 -13958966 - L1ME1 LINE L1 -122 6044 6010 2181 142 0 0 chr15 87421555 87421858 -13958663 - AluSx SINE Alu -9 303 1 2535 216 9 43 chr15 87421858 87422218 -13958303 - L1ME1 LINE L1 -156 6010 5639 225 0 0 0 chr15 87422218 87422243 -13958278 + (TGG)n Simple_repeat Simple_repeat 1 25 0 1843 156 0 0 chr15 87422245 87422515 -13958006 - AluJb SINE Alu -21 291 22 2535 216 9 43 chr15 87422515 87422699 -13957822 - L1ME1 LINE L1 -528 5638 5482 739 148 102 0 chr15 87422700 87422852 -13957669 - AluJb SINE Alu 0 310 146 261 249 0 85 chr15 87422984 87423173 -13957348 + C-rich Low_complexity Low_complexity 2 174 0 185 200 0 0 chr15 87425393 87425433 -13955088 + L3b LINE CR1 1307 1346 -237 317 238 0 25 chr15 87429192 87429272 -13951249 - L2 LINE L2 -6 3266 3189 2377 96 7 0 chr15 87430135 87430438 -13950083 + AluSq SINE Alu 1 305 -8 2191 111 0 3 chr15 87431100 87431397 -13949124 + AluSq SINE Alu 1 296 -17 2367 71 7 3 chr15 87431400 87431718 -13948803 + AluY SINE Alu 1 311 0 2121 136 3 0 chr15 87431913 87432215 -13948306 + AluJb SINE Alu 1 303 -9 1616 119 0 0 chr15 87432979 87433205 -13947316 + AluSg/x SINE Alu 85 310 -2 259 276 109 19 chr15 87433238 87433394 -13947127 + L1ME4a LINE L1 5934 6103 -18 1702 176 14 3 chr15 87433443 87433739 -13946782 - AluJo SINE Alu -10 302 4 318 238 0 25 chr15 87433749 87433829 -13946692 - L2 LINE L2 -6 3266 3189 2425 86 3 0 chr15 87434429 87434731 -13945790 + AluSx SINE Alu 1 303 -9 1016 162 7 0 chr15 87434733 87434887 -13945634 + AluSg/x SINE Alu 133 287 -23 22 0 0 0 chr15 87434967 87434989 -13945532 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr15 87435075 87435104 -13945417 + AT_rich Low_complexity Low_complexity 1 29 0 1728 231 40 14 chr15 87435192 87435616 -13944905 + L1MDa LINE L1 25 459 -6081 594 189 140 0 chr15 87435625 87435768 -13944753 + L1ME1 LINE L1 5752 5914 -252 2141 126 0 0 chr15 87436236 87436530 -13943991 + AluSx SINE Alu 1 294 -18 21 0 0 0 chr15 87436533 87436554 -13943967 + AT_rich Low_complexity Low_complexity 1 21 0 6182 255 50 50 chr15 87436784 87437791 -13942730 + L1M4 LINE L1 2 1008 -5638 1810 151 0 51 chr15 87437791 87438103 -13942418 + AluJb SINE Alu 2 297 -15 6182 255 50 50 chr15 87438103 87438238 -13942283 + L1M4 LINE L1 1008 1142 -5504 2433 53 0 0 chr15 87438238 87438548 -13941973 - AluY SINE Alu 0 310 1 6182 255 50 50 chr15 87438548 87439718 -13940803 + L1M4 LINE L1 1142 2449 -4197 242 346 7 15 chr15 87439733 87439869 -13940652 + L1M4c LINE L1 294 428 -6218 3854 225 88 28 chr15 87440185 87442700 -13937821 + L1M4c LINE L1 828 3190 -3454 2145 109 10 13 chr15 87442700 87443002 -13937519 + AluSx SINE Alu 1 301 -11 3854 225 88 28 chr15 87443002 87443058 -13937463 + L1M4c LINE L1 3190 3241 -3403 2037 153 0 10 chr15 87443058 87443371 -13937150 + AluJb SINE Alu 1 310 -2 3854 225 88 28 chr15 87443371 87443483 -13937038 + L1M4c LINE L1 3241 3825 -2819 721 167 28 28 chr15 87443870 87444014 -13936507 - L1M4 LINE L1 -1160 4986 4843 862 231 4 8 chr15 87444032 87444266 -13936255 - L1M4 LINE L1 -2576 3570 3338 986 226 82 90 chr15 87444959 87445472 -13935049 - L1MC4 LINE L1 -4 8038 7530 291 280 77 22 chr15 87445766 87445995 -13934526 + L1ME LINE L1 5592 5789 -332 1208 153 67 18 chr15 87445995 87446218 -13934303 + MER46A DNA MER2_type 3 236 0 291 280 77 22 chr15 87446218 87446235 -13934286 + L1ME LINE L1 5789 5804 -317 2199 82 37 3 chr15 87446815 87447109 -13933412 + AluY SINE Alu 1 304 -7 822 245 32 5 chr15 87447131 87447319 -13933202 + MER58A DNA MER1_type 1 193 -31 186 143 0 0 chr15 87447426 87447461 -13933060 + (TA)n Simple_repeat Simple_repeat 1 35 0 1679 130 74 11 chr15 87447461 87447745 -13932776 - AluSx SINE Alu -10 302 1 343 284 95 49 chr15 87447926 87448141 -13932380 - L2 LINE L2 -1 3312 3108 2354 103 0 7 chr15 87448141 87448451 -13932070 - AluSx SINE Alu -3 309 2 343 284 95 49 chr15 87448451 87448761 -13931760 - L2 LINE L2 -205 3108 2708 216 240 0 20 chr15 87449161 87449211 -13931310 + CT-rich Low_complexity Low_complexity 2 50 0 207 220 20 0 chr15 87449220 87449270 -13931251 + MIR3 SINE MIR 137 187 -21 267 211 295 0 chr15 87449680 87449775 -13930746 - L2 LINE L2 -4 3309 3187 2362 67 0 0 chr15 87449885 87450167 -13930354 - AluSx SINE Alu -10 302 21 337 26 0 0 chr15 87450193 87450231 -13930290 + MSTC LTR MaLR 1 38 -390 * 1625 169 11 0 chr15 87450228 87450495 -13930026 + MSTC LTR MaLR 154 423 -5 1926 121 7 28 chr15 87450576 87450865 -13929656 - AluSq SINE Alu -30 283 1 1945 157 7 13 chr15 87451293 87451593 -13928928 + AluJb SINE Alu 1 298 -14 192 218 77 77 chr15 87451892 87451970 -13928551 + L2 LINE L2 3226 3303 -10 244 358 127 21 chr15 87452096 87452428 -13928093 - L2 LINE L2 -351 2963 2597 2180 127 0 0 chr15 87452583 87452882 -13927639 + AluSx SINE Alu 1 299 -13 1956 127 3 42 chr15 87454222 87454529 -13925992 - AluJb SINE Alu -17 295 1 23 33 0 0 chr15 87454765 87454795 -13925726 + AT_rich Low_complexity Low_complexity 1 30 0 227 240 90 26 chr15 87455739 87455846 -13924675 + MIR3 SINE MIR 13 122 -103 399 266 135 21 chr15 87455846 87456038 -13924483 + MIR SINE MIR 15 228 -34 180 111 0 0 chr15 87456887 87456914 -13923607 + (TA)n Simple_repeat Simple_repeat 1 27 0 6043 251 138 20 chr15 87456940 87459898 -13920623 - L2 LINE L2 0 3313 7 678 159 71 24 chr15 87460378 87460504 -13920017 + FLAM_A SINE Alu 2 133 0 229 365 0 19 chr15 87461124 87461228 -13919293 + L2 LINE L2 2970 3071 -201 956 85 15 8 chr15 87461684 87461814 -13918707 - AluSp/q SINE Alu -29 284 154 2531 61 0 0 chr15 87461932 87462229 -13918292 + AluY SINE Alu 1 297 -14 274 340 91 35 chr15 87462284 87462516 -13918005 - L2 LINE L2 -109 3163 2919 240 185 0 0 chr15 87463513 87463567 -13916954 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 277 197 158 39 chr15 87463575 87463702 -13916819 - L1ME4a LINE L1 -15 6106 5965 23 68 0 0 chr15 87463748 87463792 -13916729 + AT_rich Low_complexity Low_complexity 1 44 0 2032 137 7 3 chr15 87463799 87464091 -13916430 + AluJo SINE Alu 1 293 -19 288 77 0 0 chr15 87464091 87464130 -13916391 + (GGA)n Simple_repeat Simple_repeat 1 39 0 291 202 0 85 chr15 87464130 87464224 -13916297 + L1MC4 LINE L1 7161 7246 -796 543 235 139 70 chr15 87464352 87464541 -13915980 + L1MC5 LINE L1 7271 7446 -515 270 0 0 0 chr15 87464541 87464571 -13915950 + (CA)n Simple_repeat Simple_repeat 2 31 0 543 235 139 70 chr15 87464571 87464993 -13915528 + L1MC5 LINE L1 7446 7924 -37 589 214 102 48 chr15 87465037 87465224 -13915297 + MER102b DNA MER1_type 99 295 -46 755 259 35 6 chr15 87465476 87465650 -13914871 + LTR67 LTR ERVL 1 179 -378 366 250 129 0 chr15 87465833 87465949 -13914572 + LTR67 LTR ERVL 424 554 -3 1841 116 58 17 chr15 87466166 87466460 -13914061 + AluSx SINE Alu 1 306 -6 21 36 0 0 chr15 87466845 87466873 -13913648 + AT_rich Low_complexity Low_complexity 1 28 0 351 193 0 0 chr15 87466873 87466930 -13913591 - AluS SINE Alu -244 57 1 670 205 154 0 chr15 87467270 87467426 -13913095 - MIR SINE MIR 0 262 83 402 232 0 84 chr15 87467707 87467749 -13912772 + MIR SINE MIR 84 128 -134 2323 82 3 0 chr15 87467749 87468054 -13912467 - AluSg1 SINE Alu -3 306 1 402 232 0 84 chr15 87468054 87468153 -13912368 + MIR SINE MIR 128 213 -49 1997 103 36 13 chr15 87468869 87469171 -13911350 - AluSx SINE Alu -3 309 1 1278 146 45 0 chr15 87469409 87469629 -13910892 - L1MB4 LINE L1 0 6180 5951 529 186 13 31 chr15 87469887 87470118 -13910403 + CT-rich Low_complexity Low_complexity 1 226 0 708 221 61 6 chr15 87470118 87470281 -13910240 - AluJb SINE Alu -1 311 140 791 55 0 31 chr15 87470382 87470509 -13910012 + AluYa5/8 SINE Alu 184 306 -4 804 122 0 0 chr15 87470509 87470624 -13909897 - AluJo/FLAM SINE Alu -186 126 12 740 266 50 37 chr15 87470636 87471289 -13909232 - L1MEd LINE L1 -4633 1677 974 575 259 87 60 chr15 87471302 87471355 -13909166 + MER58C DNA MER1_type 5 55 -2365 1716 158 14 10 chr15 87471355 87471652 -13908869 - AluJb SINE Alu -14 298 1 575 259 87 60 chr15 87471652 87471783 -13908738 + MER58C DNA MER1_type 55 194 -21 2259 109 0 0 chr15 87471853 87472164 -13908357 - AluSx SINE Alu -1 311 1 313 236 133 31 chr15 87472297 87472492 -13908029 - L1MC5 LINE L1 -178 7783 7569 1005 130 0 0 chr15 87472503 87472657 -13907864 - AluSg/x SINE Alu 0 312 159 3585 33 9 0 chr15 87472657 87473079 -13907442 - L1P LINE L1 -1726 4420 3995 * 13328 39 3 2 chr15 87473064 87474703 -13905818 + L1P LINE L1 2351 3991 -2155 2042 109 40 72 chr15 87474703 87475051 -13905470 + THE1B LTR MaLR 28 364 0 397 192 104 33 chr15 87475051 87475172 -13905349 - MER63C DNA MER1_type -594 336 206 4450 143 29 2 chr15 87475172 87475923 -13904598 + L1PB4 LINE L1 5401 6303 0 996 138 69 16 chr15 87475946 87476135 -13904386 - MER63C DNA MER1_type -694 236 38 2361 64 0 10 chr15 87476373 87476684 -13903837 - AluY SINE Alu -3 308 1 1505 225 50 11 chr15 87477148 87477508 -13903013 - MLT1A2 LTR MaLR 0 374 1 547 321 84 9 chr15 87477529 87477744 -13902777 + MIR SINE MIR 23 253 -9 559 264 155 0 chr15 87477759 87477914 -13902607 + MER5A DNA MER1_type 10 188 -1 309 297 144 0 chr15 87478310 87478428 -13902093 + L2 LINE L2 2916 3050 -222 390 301 0 0 chr15 87478604 87478707 -13901814 + MIR SINE MIR 46 148 -114 492 325 25 0 chr15 87479030 87479187 -13901334 + MIR SINE MIR 59 219 -43 2286 91 7 0 chr15 87479226 87479533 -13900988 + AluSx SINE Alu 1 309 -3 486 299 81 7 chr15 87479577 87479861 -13900660 - L1M4 LINE L1 -1814 4332 4028 462 145 0 48 chr15 87479879 87479962 -13900559 - MER1B DNA MER1_type -6 323 245 * 1288 159 39 0 chr15 87479959 87480166 -13900355 - MER1B DNA MER1_type -82 215 1 693 171 122 0 chr15 87480407 87480530 -13899991 + MLT1A1 LTR MaLR 228 365 0 523 232 189 32 chr15 87481430 87481620 -13898901 - MIR SINE MIR -20 242 23 494 181 150 8 chr15 87481656 87481789 -13898732 - MIR SINE MIR -58 204 53 478 268 51 32 chr15 87482428 87482585 -13897936 + MIR3 SINE MIR 20 179 -29 33 56 0 0 chr15 87482649 87482703 -13897818 + AT_rich Low_complexity Low_complexity 1 54 0 475 308 23 35 chr15 87482878 87483050 -13897471 + MER5B DNA MER1_type 7 176 -2 491 246 18 0 chr15 87483060 87483170 -13897351 - MER5A DNA MER1_type 0 189 78 1168 175 39 0 chr15 87483170 87483376 -13897145 - MLT1D LTR MaLR 0 505 292 2070 133 0 3 chr15 87483406 87483708 -13896813 - AluSx SINE Alu -11 301 1 225 339 46 23 chr15 87484446 87484576 -13895945 - MLT1K LTR MaLR -20 568 436 451 298 57 7 chr15 87484747 87484888 -13895633 - MLT1K LTR MaLR -293 295 148 782 164 110 12 chr15 87485082 87485293 -13895228 - MLT1H LTR MaLR 0 549 282 485 217 175 7 chr15 87485521 87485664 -13894857 + MER5A DNA MER1_type 17 183 -6 410 214 154 8 chr15 87486181 87486298 -13894223 - MER94 DNA DNA 0 134 1 444 306 20 14 chr15 87486341 87486488 -13894033 + MIR3 SINE MIR 20 167 -41 288 175 62 38 chr15 87486768 87486848 -13893673 + MIR SINE MIR 72 153 -109 21 0 0 0 chr15 87487062 87487083 -13893438 + AT_rich Low_complexity Low_complexity 1 21 0 1575 177 0 7 chr15 87487091 87487373 -13893148 - AluJo SINE Alu -22 290 11 434 132 40 0 chr15 87487705 87487781 -13892740 - AluSp/q SINE Alu 0 313 235 698 76 0 0 chr15 87489082 87489174 -13891347 + AluY SINE Alu 40 131 -180 1414 154 152 92 chr15 87489657 87490044 -13890477 - MLT1C LTR MaLR -6 461 44 2307 72 0 20 chr15 87490044 87490349 -13890172 - AluY SINE Alu -12 299 1 1414 154 152 92 chr15 87490349 87490396 -13890125 - MLT1C LTR MaLR -423 44 1 254 288 14 41 chr15 87490453 87490526 -13889995 - L2 LINE L2 -85 3187 3117 1562 121 0 4 chr15 87490572 87490828 -13889693 - AluSq SINE Alu 0 309 55 844 259 75 14 chr15 87491241 87491571 -13888950 - MLT1F LTR MaLR 0 542 220 610 110 0 11 chr15 87491571 87491662 -13888859 - AluS SINE Alu -221 91 2 1769 123 28 3 chr15 87491662 87491946 -13888575 - L1MB3 LINE L1 -122 6061 5771 780 184 0 0 chr15 87491976 87492101 -13888420 - FLAM_C SINE Alu -14 129 5 1328 141 15 0 chr15 87492101 87492307 -13888214 - L1MB3 LINE L1 -401 5782 5574 * 3115 208 77 57 chr15 87492300 87492674 -13887847 - L1MB3 LINE L1 -850 5296 4931 1854 143 0 23 chr15 87492674 87492981 -13887540 + AluJb SINE Alu 1 300 -12 3115 208 77 57 chr15 87492981 87493087 -13887434 - L1MB3 LINE L1 -1215 4931 4829 1518 106 55 0 chr15 87493087 87493305 -13887216 + MER30 DNA MER1_type 1 230 0 3115 208 77 57 chr15 87493305 87493432 -13887089 - L1MB3 LINE L1 -1317 4829 4706 2223 108 0 3 chr15 87493432 87493737 -13886784 - AluSq SINE Alu -9 304 1 3115 208 77 57 chr15 87493737 87493778 -13886743 - L1MB3 LINE L1 -1440 4706 4667 2186 100 0 13 chr15 87493778 87494089 -13886432 - AluSg SINE Alu -2 308 2 3115 208 77 57 chr15 87494089 87494225 -13886296 - L1MB3 LINE L1 -1479 4667 4535 2159 87 0 29 chr15 87494225 87494581 -13885940 - AluSq SINE Alu 0 313 1 3115 208 77 57 chr15 87494581 87494762 -13885759 - L1MB3 LINE L1 -1611 4535 4307 2600 120 32 2 chr15 87494762 87495170 -13885351 + LTR24C LTR ERV1 212 631 -4 299 301 11 11 chr15 87495447 87495540 -13884981 + L2 LINE L2 3179 3271 -42 394 227 81 115 chr15 87495944 87496292 -13884229 + L1ME4a LINE L1 5713 6048 -73 2157 117 0 0 chr15 87496323 87496632 -13883889 - AluSx SINE Alu -3 309 1 322 273 10 10 chr15 87497069 87497168 -13883353 + CT-rich Low_complexity Low_complexity 2 100 0 371 221 23 12 chr15 87497299 87497385 -13883136 - L2 LINE L2 -221 3051 2965 467 313 24 62 chr15 87497632 87497840 -13882681 - L3b LINE CR1 -139 1444 1245 2190 98 0 25 chr15 87498327 87498643 -13881878 + AluSx SINE Alu 5 312 0 1619 264 86 24 chr15 87499590 87500089 -13880432 + MLT1F LTR MaLR 5 534 -8 401 171 45 11 chr15 87500084 87500172 -13880349 - MER97c DNA MER1_type? -960 130 40 * 1381 229 69 29 chr15 87500250 87500944 -13879577 - L1ME LINE L1 -600 5562 4828 419 298 107 18 chr15 87500944 87501169 -13879352 + Charlie2b DNA MER1_type 69 313 -2549 328 250 40 108 chr15 87501166 87501314 -13879207 + Charlie2b DNA MER1_type 556 693 -2089 * 947 190 0 5 chr15 87501353 87501537 -13878984 + Charlie2a DNA MER1_type 1468 1650 -1212 537 240 20 7 chr15 87501531 87501681 -13878840 + Charlie2a DNA MER1_type 2710 2861 -1 * 552 214 119 6 chr15 87501690 87501849 -13878672 + MER5B DNA MER1_type 1 177 -1 198 231 77 44 chr15 87501935 87502026 -13878495 + L2 LINE L2 2260 2353 -961 237 254 81 38 chr15 87502036 87502221 -13878300 - Charlie7 DNA MER1_type -12 2600 2408 254 271 57 85 chr15 87502240 87502487 -13878034 + L2 LINE L2 2925 3164 -108 815 190 193 68 chr15 87502644 87502955 -13877566 - MSTB2 LTR MaLR -93 364 15 293 45 0 23 chr15 87503097 87503141 -13877380 + (TA)n Simple_repeat Simple_repeat 1 43 0 398 158 64 31 chr15 87503180 87503580 -13876941 + (CATAT)n Simple_repeat Simple_repeat 1 412 0 268 95 89 30 chr15 87503563 87503732 -13876789 + (TA)n Simple_repeat Simple_repeat 1 179 0 * 314 273 92 78 chr15 87503739 87504032 -13876489 - L1ME4a LINE L1 -157 5964 5668 308 119 80 20 chr15 87504033 87504184 -13876337 + (TTATA)n Simple_repeat Simple_repeat 5 164 0 * 443 56 112 6 chr15 87504168 87504329 -13876192 + (TA)n Simple_repeat Simple_repeat 1 178 0 39 22 0 0 chr15 87504331 87504377 -13876144 + AT_rich Low_complexity Low_complexity 1 46 0 2709 122 29 2 chr15 87504477 87504887 -13875634 - Tigger2 DNA MER2_type -13 2705 2285 2104 132 0 0 chr15 87504889 87505199 -13875322 - AluSg SINE Alu 0 310 1 429 179 0 0 chr15 87505208 87505275 -13875246 - Tigger2 DNA MER2_type -2649 69 3 297 0 0 0 chr15 87505275 87505308 -13875213 + (TG)n Simple_repeat Simple_repeat 2 34 0 1777 209 85 21 chr15 87505326 87505762 -13874759 - MLT2B1 LTR ERVL -56 464 1 990 183 61 33 chr15 87505981 87506194 -13874327 + MER20 DNA MER1_type 1 219 0 308 253 71 36 chr15 87506276 87506490 -13874031 + MIR SINE MIR 27 245 -17 1486 246 122 23 chr15 87506906 87507298 -13873223 - L1MC4 LINE L1 0 8042 7566 185 0 40 0 chr15 87507298 87507323 -13873198 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1486 246 122 23 chr15 87507323 87507544 -13872977 - L1MC4 LINE L1 -476 7566 7368 896 158 0 0 chr15 87507920 87508053 -13872468 - FLAM_C SINE Alu 0 133 1 546 220 99 7 chr15 87508153 87508294 -13872227 - MIR SINE MIR -102 160 7 216 295 170 9 chr15 87508366 87508478 -13872043 - MIR3 SINE MIR -68 140 11 184 347 21 11 chr15 87508997 87509092 -13871429 + L2 LINE L2 2990 3085 -187 185 222 19 56 chr15 87509331 87509385 -13871136 - L2 LINE L2 -93 3220 3169 182 250 104 0 chr15 87509613 87509661 -13870860 + L2 LINE L2 375 427 -2887 2125 117 3 0 chr15 87509783 87510125 -13870396 + AluSx SINE Alu 1 343 0 523 248 8 30 chr15 87510361 87510494 -13870027 + L2 LINE L2 3168 3297 -16 227 346 47 9 chr15 87510507 87510614 -13869907 - L2 LINE L2 -2 3270 3160 346 271 50 36 chr15 87511184 87511324 -13869197 - MIR3 SINE MIR -25 183 42 222 255 0 0 chr15 87511434 87511485 -13869036 - L2 LINE L2 -12 3260 3210 983 182 6 17 chr15 87511517 87511698 -13868823 + AluJo SINE Alu 1 179 -133 405 266 73 11 chr15 87511698 87511865 -13868656 - MIR SINE MIR -57 151 4 1962 91 72 0 chr15 87512106 87512382 -13868139 - AluSx SINE Alu -16 296 1 259 293 264 24 chr15 87513081 87513289 -13867232 + MIR SINE MIR 2 259 -3 283 291 14 57 chr15 87513602 87513743 -13866778 + L1ME4a LINE L1 5654 5788 -333 1997 123 7 0 chr15 87513767 87514075 -13866446 + AluJb SINE Alu 1 310 -2 1015 175 0 0 chr15 87514075 87514252 -13866269 + AluJb SINE Alu 134 310 -2 580 118 90 49 chr15 87514390 87514534 -13865987 + L1ME4a LINE L1 5968 6117 -4 1390 208 71 0 chr15 87514776 87515084 -13865437 - L1MD3 LINE L1 0 7995 7666 269 98 0 20 chr15 87515123 87515174 -13865347 + (ATG)n Simple_repeat Simple_repeat 3 52 0 541 270 29 59 chr15 87516224 87516428 -13864093 + MIR SINE MIR 14 211 -51 183 306 0 0 chr15 87516659 87516708 -13863813 - MIR3 SINE MIR -3 205 157 424 327 123 19 chr15 87516780 87517040 -13863481 + L3 LINE CR1 839 1125 -452 981 157 0 67 chr15 87517278 87517456 -13863065 + FRAM SINE Alu 1 166 0 519 197 63 16 chr15 87517619 87517746 -13862775 + MER94 DNA DNA 1 133 -1 534 242 37 2 chr15 87518146 87518348 -13862173 - MIR SINE MIR -41 221 15 217 323 5 76 chr15 87520186 87520384 -13860137 - MIR SINE MIR 0 262 79 2229 113 0 0 chr15 87520412 87520722 -13859799 - AluSx SINE Alu -2 310 1 864 273 140 21 chr15 87522179 87522608 -13857913 - L2 LINE L2 0 3313 2834 2120 232 94 80 chr15 87522712 87522783 -13857738 - L1MC4 LINE L1 -2 8040 7971 1673 183 0 26 chr15 87522783 87523095 -13857426 + AluSx SINE Alu 1 304 -8 2120 232 94 80 chr15 87523095 87524119 -13856402 - L1MC4 LINE L1 -71 7971 6930 467 280 27 7 chr15 87524203 87524353 -13856168 - MIR3 SINE MIR -7 201 49 349 321 132 26 chr15 87524395 87524585 -13855936 - MIR SINE MIR -12 250 41 396 0 0 0 chr15 87525563 87525607 -13854914 + (CA)n Simple_repeat Simple_repeat 2 45 0 * 444 19 0 0 chr15 87525606 87525659 -13854862 + (TC)n Simple_repeat Simple_repeat 1 53 0 2187 110 0 0 chr15 87527407 87527707 -13852814 - AluSg SINE Alu -10 300 1 357 328 46 40 chr15 87527749 87527923 -13852598 + MIR SINE MIR 66 240 -22 245 188 217 0 chr15 87527936 87528005 -13852516 - L2 LINE L2 -41 3231 3148 251 284 0 34 chr15 87528826 87528914 -13851607 - MIR SINE MIR -96 166 82 295 157 57 57 chr15 87529233 87529303 -13851218 + MIR SINE MIR 94 163 -99 188 256 188 43 chr15 87529836 87529953 -13850568 + L2 LINE L2 2571 2704 -610 1051 76 0 0 chr15 87529969 87530100 -13850421 + AluSp SINE Alu 1 131 -182 2195 101 0 0 chr15 87530104 87530428 -13850093 + AluSp SINE Alu 1 313 0 365 291 62 74 chr15 87530443 87530701 -13849820 + L2 LINE L2 2723 2977 -337 2193 106 0 10 chr15 87530739 87531041 -13849480 - AluSx SINE Alu -13 299 1 434 222 8 71 chr15 87531043 87531169 -13849352 - MIR SINE MIR -61 147 30 339 240 77 10 chr15 87531142 87531246 -13849275 + MIR3 SINE MIR 58 168 -40 * 184 297 124 68 chr15 87532350 87532616 -13847905 - L2 LINE L2 -86 3186 2906 1940 121 0 31 chr15 87533065 87533392 -13847129 - AluSx SINE Alu 0 323 6 677 319 26 0 chr15 87533582 87533814 -13846707 + MIR SINE MIR 6 243 -19 356 183 70 0 chr15 87535769 87535840 -13844681 + MER5A DNA MER1_type 1 76 -113 1547 165 7 11 chr15 87535842 87536115 -13844406 + AluJo SINE Alu 5 276 -36 355 186 21 0 chr15 87536116 87536213 -13844308 + GA-rich Low_complexity Low_complexity 1 99 0 426 227 84 0 chr15 87536213 87536332 -13844189 + MER5A DNA MER1_type 61 189 0 737 268 0 17 chr15 87536340 87536519 -13844002 - MER5B DNA MER1_type 0 178 3 347 203 244 0 chr15 87536522 87536645 -13843876 - MER5A DNA MER1_type -2 187 35 1972 121 22 32 chr15 87536660 87536975 -13843546 + AluSx SINE Alu 1 312 0 801 134 0 0 chr15 87536985 87537157 -13843364 + (GGAA)n Simple_repeat Simple_repeat 3 174 0 549 158 0 0 chr15 87537162 87537301 -13843220 + GA-rich Low_complexity Low_complexity 4 142 0 960 111 0 0 chr15 87537303 87537483 -13843038 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1052 211 174 20 chr15 87538383 87538681 -13841840 + MER2 DNA MER2_type 1 344 0 216 269 90 13 chr15 87539097 87539175 -13841346 + L2 LINE L2 3202 3285 -28 319 216 27 81 chr15 87539739 87539850 -13840671 + MIR SINE MIR 42 146 -62 516 293 80 11 chr15 87539918 87540106 -13840415 - MIR SINE MIR -6 256 56 324 273 263 19 chr15 87541267 87541476 -13839045 - L2 LINE L2 -94 3178 2919 495 0 0 0 chr15 87541654 87541709 -13838812 + (CA)n Simple_repeat Simple_repeat 1 55 0 1645 99 56 43 chr15 87542425 87542835 -13837686 - MER51A LTR ERV1 0 634 1 2084 153 3 9 chr15 87542835 87543176 -13837345 - MER51A-int LTR ERV1 0 7816 7478 3998 344 39 33 chr15 87543377 87546813 -13833708 - MER51A-int LTR ERV1 -1600 6568 2662 477 328 55 35 chr15 87547108 87547827 -13832694 - MER51A-int LTR ERV1 -4690 1964 1231 462 313 31 33 chr15 87548010 87548305 -13832216 - MER51A-int LTR ERV1 -5050 1814 1435 2149 212 86 109 chr15 87548403 87549252 -13831269 - MER51A-int LTR ERV1 -6987 829 1 1309 133 133 19 chr15 87549252 87549508 -13831013 - MER51A LTR ERV1 0 634 350 839 131 307 0 chr15 87549506 87549682 -13830839 - MER51A LTR ERV1 -404 230 1 * 530 296 22 48 chr15 87549945 87550175 -13830346 - MIR SINE MIR -20 242 19 414 0 0 0 chr15 87551034 87551080 -13829441 + (TG)n Simple_repeat Simple_repeat 2 47 0 512 314 45 18 chr15 87551838 87552061 -13828460 - MIR SINE MIR -14 248 20 269 297 190 0 chr15 87552365 87552560 -13827961 - L3 LINE CR1 -259 1318 1087 893 192 40 20 chr15 87553000 87553198 -13827323 - MIR SINE MIR 0 262 61 335 270 9 36 chr15 87553283 87553394 -13827127 - L2 LINE L2 -228 3044 2937 257 322 25 8 chr15 87553537 87553658 -13826863 + L2 LINE L2 2848 2970 -343 354 23 0 0 chr15 87553765 87553808 -13826713 + (TG)n Simple_repeat Simple_repeat 2 44 0 965 144 0 7 chr15 87553808 87553953 -13826568 - AluSg/x SINE Alu -16 296 151 660 269 98 13 chr15 87554765 87555191 -13825330 + MLT1J LTR MaLR 3 511 0 2218 98 3 0 chr15 87555767 87556062 -13824459 - AluSx SINE Alu -16 296 1 471 313 25 0 chr15 87556100 87556260 -13824261 + MIR SINE MIR 34 197 -65 1876 223 102 33 chr15 87556319 87556830 -13823691 + MLT1E LTR MaLR 30 575 -18 701 304 29 53 chr15 87556887 87557265 -13823256 + MLT1K LTR MaLR 163 531 -57 324 247 0 27 chr15 87557774 87557847 -13822674 + L1MC4 LINE L1 6633 6703 -1339 713 245 43 16 chr15 87557954 87558138 -13822383 + MER5A DNA MER1_type 1 189 0 1550 153 34 30 chr15 87558149 87558444 -13822077 - AluJo SINE Alu -11 301 6 239 169 68 0 chr15 87558451 87558510 -13822011 - L1ME LINE L1 -339 5782 5720 345 200 0 0 chr15 87558658 87558728 -13821793 - L1ME LINE L1 -1550 4596 4527 287 257 40 14 chr15 87558967 87559039 -13821482 - MLT1L LTR MaLR -320 295 222 780 248 227 32 chr15 87559039 87559503 -13821018 + MLT1G1 LTR MaLR 1 590 -5 265 356 0 0 chr15 87559517 87559618 -13820903 - MLT1L LTR MaLR -405 210 110 2062 113 0 23 chr15 87559645 87559947 -13820574 + AluSx SINE Alu 1 295 -17 297 0 0 0 chr15 87560428 87560461 -13820060 + (TG)n Simple_repeat Simple_repeat 2 34 0 213 225 0 0 chr15 87561142 87561231 -13819290 + CT-rich Low_complexity Low_complexity 2 90 0 373 287 0 16 chr15 87561246 87561368 -13819153 + CT-rich Low_complexity Low_complexity 2 121 0 492 157 15 8 chr15 87561383 87561517 -13819004 + CT-rich Low_complexity Low_complexity 2 136 0 415 252 107 8 chr15 87562103 87562234 -13818287 + MIR3 SINE MIR 10 153 -55 1812 158 10 23 chr15 87562260 87562570 -13817951 - AluJo SINE Alu -4 308 3 366 264 52 39 chr15 87564219 87564364 -13816157 + MIR SINE MIR 3 147 -80 230 297 14 0 chr15 87564641 87564715 -13815806 + (TG)n Simple_repeat Simple_repeat 2 76 0 1995 123 13 3 chr15 87565125 87565427 -13815094 - AluSq SINE Alu -8 305 1 838 299 120 37 chr15 87565452 87565961 -13814560 - L1MC4a LINE L1 -1689 6119 5569 231 289 58 19 chr15 87566488 87566592 -13813929 + MIR3 SINE MIR 87 194 -14 226 303 168 8 chr15 87566886 87567005 -13813516 + MIR SINE MIR 114 251 -11 280 264 91 9 chr15 87570120 87570230 -13810291 - L2 LINE L2 -1 3312 3194 677 237 125 32 chr15 87570277 87570556 -13809965 + L2 LINE L2 3008 3312 -1 1300 149 4 42 chr15 87570999 87571107 -13809414 - AluJo SINE Alu -80 232 121 1863 108 4 0 chr15 87571107 87571386 -13809135 - AluSq SINE Alu 0 311 32 1300 149 4 42 chr15 87571386 87571517 -13809004 - AluJo SINE Alu -191 121 1 201 249 0 186 chr15 87571886 87572063 -13808458 + MIR SINE MIR 106 249 -13 * 234 326 117 48 chr15 87572052 87572368 -13808153 - L2 LINE L2 0 3272 2935 2135 100 10 7 chr15 87572616 87572917 -13807604 + AluSx SINE Alu 1 302 -10 293 314 12 0 chr15 87572934 87573020 -13807501 + MER91B DNA MER1_type 104 190 0 242 263 8 0 chr15 87573203 87573275 -13807246 + MIR SINE MIR 68 143 -65 1622 136 0 68 chr15 87574062 87574357 -13806164 + AluSx SINE Alu 1 275 -37 617 319 85 5 chr15 87574469 87574703 -13805818 + MIR SINE MIR 16 262 0 334 182 125 23 chr15 87574751 87574839 -13805682 + MIR3 SINE MIR 81 177 -31 354 265 4 29 chr15 87574941 87575218 -13805303 + GA-rich Low_complexity Low_complexity 1 269 0 244 283 113 38 chr15 87575826 87575932 -13804589 + MIR3 SINE MIR 45 158 -50 192 261 43 0 chr15 87577405 87577474 -13803047 + MIR SINE MIR 63 134 -128 1041 173 128 0 chr15 87577742 87577968 -13802553 - L1MD3 LINE L1 -12 7983 7729 423 0 0 0 chr15 87578295 87578342 -13802179 + (CA)n Simple_repeat Simple_repeat 2 48 0 390 249 179 35 chr15 87579965 87580138 -13800383 + MER97b DNA MER1_type? 1 198 -855 1492 134 36 78 chr15 87580159 87580466 -13800055 - L1MB4 LINE L1 0 6180 5887 975 99 33 13 chr15 87580477 87580628 -13799893 - AluSp/q SINE Alu -1 312 159 547 200 0 9 chr15 87580628 87580738 -13799783 + MER97b DNA MER1_type? 249 357 -696 1243 223 79 31 chr15 87580842 87581321 -13799200 + MER97c DNA MER1_type? 585 1086 -4 225 0 0 0 chr15 87581339 87581364 -13799157 + (CA)n Simple_repeat Simple_repeat 1 25 0 275 276 76 9 chr15 87581678 87581783 -13798738 - L2 LINE L2 -17 3255 3144 346 256 14 4 chr15 87582896 87583020 -13797501 - MIR3 SINE MIR -51 157 32 500 286 35 29 chr15 87583386 87583557 -13796964 + L1MC4a LINE L1 5143 5314 -832 270 136 0 0 chr15 87583768 87583812 -13796709 + (CA)n Simple_repeat Simple_repeat 2 45 0 1982 275 115 10 chr15 87584047 87584752 -13795769 + MER20B DNA MER1_type 5 783 0 271 249 137 19 chr15 87584867 87584980 -13795541 + MLT1L LTR MaLR 328 480 -135 951 254 68 42 chr15 87585486 87585841 -13794680 - MLT1I LTR MaLR 0 409 46 2057 119 0 3 chr15 87586062 87586375 -13794146 + AluSx SINE Alu 1 312 0 280 298 12 36 chr15 87586431 87586515 -13794006 - L2 LINE L2 0 3272 3191 305 289 0 12 chr15 87586594 87586677 -13793844 + L1MC4a LINE L1 5811 5892 -1916 999 194 4 56 chr15 87586677 87586909 -13793612 + AluJo SINE Alu 1 220 -92 1977 152 0 0 chr15 87587181 87587483 -13793038 + AluSx SINE Alu 9 310 -2 658 203 167 53 chr15 87588551 87588748 -13791773 - MIR SINE MIR -44 218 16 312 246 26 9 chr15 87588794 87588905 -13791616 + MIR SINE MIR 45 156 -58 872 134 0 0 chr15 87589050 87589169 -13791352 + AluJ SINE Alu 1 119 -183 289 105 84 0 chr15 87589169 87589264 -13791257 + (TA)n Simple_repeat Simple_repeat 2 104 0 848 196 81 17 chr15 87589264 87589437 -13791084 + AluJ SINE Alu 123 306 -6 204 308 31 0 chr15 87589444 87589509 -13791012 + MIR SINE MIR 196 262 0 652 266 33 21 chr15 87589813 87590000 -13790521 - MLT1J LTR MaLR -245 266 35 366 288 17 8 chr15 87590490 87590608 -13789913 - MIR3 SINE MIR -9 199 81 2044 253 72 27 chr15 87591810 87592546 -13787975 + L2 LINE L2 1816 2584 -730 530 300 77 35 chr15 87592542 87592802 -13787719 - L2 LINE L2 -463 2851 2581 * 317 293 62 77 chr15 87594079 87594287 -13786234 + MIR SINE MIR 38 242 -20 195 313 24 24 chr15 87594859 87594942 -13785579 - MIR SINE MIR -150 112 30 219 146 0 0 chr15 87595313 87595354 -13785167 + (CATA)n Simple_repeat Simple_repeat 1 41 0 715 258 104 5 chr15 87596305 87596526 -13783995 - MIR SINE MIR -19 243 1 474 18 0 0 chr15 87596548 87596603 -13783918 + (TA)n Simple_repeat Simple_repeat 2 56 0 205 296 19 0 chr15 87597239 87597293 -13783228 - L3 LINE CR1 -11 1566 1512 1948 138 0 3 chr15 87597316 87597632 -13782889 + AluSx SINE Alu 1 312 0 353 282 90 58 chr15 87597736 87597924 -13782597 + L2 LINE L2 3075 3268 -4 201 381 9 9 chr15 87597913 87598018 -13782503 - L3 LINE CR1 -65 1512 1408 * 261 0 0 0 chr15 87598655 87598684 -13781837 + (TG)n Simple_repeat Simple_repeat 1 29 0 582 41 0 0 chr15 87599639 87599712 -13780809 + (TC)n Simple_repeat Simple_repeat 2 74 0 196 294 0 0 chr15 87600307 87600358 -13780163 - MIR3 SINE MIR -48 160 110 406 219 57 8 chr15 87600395 87600518 -13780003 + MIR3 SINE MIR 63 191 -17 360 0 0 0 chr15 87604446 87604486 -13776035 + (TG)n Simple_repeat Simple_repeat 2 41 0 209 273 71 40 chr15 87607640 87607739 -13772782 - MIR SINE MIR -133 129 28 240 273 157 16 chr15 87608258 87608379 -13772142 + MIR3 SINE MIR 39 176 -32 608 154 21 49 chr15 87608511 87608654 -13771867 + MIR SINE MIR 1 139 -123 450 0 0 0 chr15 87609121 87609171 -13771350 + (CA)n Simple_repeat Simple_repeat 2 51 0 570 155 10 0 chr15 87609171 87609268 -13771253 + L2 LINE L2 3198 3295 -18 255 311 176 0 chr15 87609826 87609945 -13770576 - MIR SINE MIR -70 192 53 356 193 174 28 chr15 87610165 87610274 -13770247 + MIR SINE MIR 82 206 -56 185 301 163 16 chr15 87611097 87611220 -13769301 - L2 LINE L2 -214 3058 2918 246 32 0 0 chr15 87612362 87612393 -13768128 + (CGGGG)n Simple_repeat Simple_repeat 1 31 0 376 227 53 68 chr15 87613324 87613456 -13767065 + MIR SINE MIR 117 246 -16 382 264 116 8 chr15 87613594 87613732 -13766789 + MIR SINE MIR 44 200 -62 693 291 16 11 chr15 87614602 87614791 -13765730 + MIR SINE MIR 16 205 -57 507 303 145 27 chr15 87615909 87616275 -13764246 - L1MC4a LINE L1 -1883 5925 5517 462 287 40 13 chr15 87617792 87617942 -13762579 - MIR SINE MIR -46 216 63 349 272 143 14 chr15 87618473 87618527 -13761994 - MIR3 SINE MIR -10 198 152 1207 200 97 21 chr15 87618527 87618817 -13761704 - AluJo SINE Alu 0 312 1 349 272 143 14 chr15 87618817 87618909 -13761612 - MIR3 SINE MIR -56 152 33 283 306 76 25 chr15 87619835 87619992 -13760529 - MIR SINE MIR -77 185 21 221 232 0 72 chr15 87620884 87620953 -13759568 + (CAGAGA)n Simple_repeat Simple_repeat 3 66 0 351 336 7 36 chr15 87621763 87621900 -13758621 - MIR3 SINE MIR -10 198 66 258 32 0 0 chr15 87623375 87623406 -13757115 + (CA)n Simple_repeat Simple_repeat 2 32 0 406 151 14 0 chr15 87624152 87624225 -13756296 + MER116 DNA Mariner 5 78 -2 982 122 7 0 chr15 87624283 87624422 -13756099 - FRAM SINE Alu -21 155 16 1716 120 28 92 chr15 87625860 87626185 -13754336 + AluJo SINE Alu 3 306 -6 335 268 62 0 chr15 87626499 87626596 -13753925 + L2 LINE L2 3211 3313 0 240 189 75 0 chr15 87627336 87627389 -13753132 - MIR SINE MIR -95 167 111 204 250 47 0 chr15 87628309 87628373 -13752148 + MIR SINE MIR 184 250 -12 403 192 169 0 chr15 87629329 87629459 -13751062 - Charlie5 DNA MER1_type 0 2621 2470 290 232 14 0 chr15 87629458 87629527 -13750994 - Charlie5 DNA MER1_type -2542 70 1 * 567 237 46 13 chr15 87632034 87632186 -13748335 + MIR3 SINE MIR 14 170 -38 198 333 14 0 chr15 87632505 87632574 -13747947 + MIR SINE MIR 16 85 -177 23 0 0 0 chr15 87633667 87633690 -13746831 + GC_rich Low_complexity Low_complexity 1 23 0 246 297 119 38 chr15 87634964 87635149 -13745372 - L3 LINE CR1 -148 1429 1230 353 212 150 18 chr15 87635394 87635507 -13745014 - MIR SINE MIR 0 262 135 411 21 0 0 chr15 87636221 87636269 -13744252 + (TA)n Simple_repeat Simple_repeat 2 49 0 754 214 94 9 chr15 87637178 87637402 -13743119 + L1ME2 LINE L1 5914 6156 -8 200 146 0 21 chr15 87637870 87637918 -13742603 + (TC)n Simple_repeat Simple_repeat 1 47 0 220 286 11 22 chr15 87638782 87638873 -13741648 + (TATATG)n Simple_repeat Simple_repeat 1 90 0 226 281 70 0 chr15 87640056 87640113 -13740408 - MIR SINE MIR -63 145 85 25 0 0 0 chr15 87640974 87640999 -13739522 + GC_rich Low_complexity Low_complexity 1 25 0 238 419 44 0 chr15 87641369 87641505 -13739016 + MIR3 SINE MIR 53 194 -14 329 264 96 62 chr15 87642900 87643078 -13737443 + MIR3 SINE MIR 15 198 -10 21 57 0 0 chr15 87644338 87644373 -13736148 + GC_rich Low_complexity Low_complexity 1 35 0 210 71 0 0 chr15 87651655 87651683 -13728838 + (TG)n Simple_repeat Simple_repeat 2 29 0 21 36 0 0 chr15 87653362 87653390 -13727131 + GC_rich Low_complexity Low_complexity 1 28 0 361 302 88 22 chr15 87654376 87654558 -13725963 - MIR SINE MIR -35 227 34 * 384 330 113 32 chr15 87654544 87654917 -13725604 + L2 LINE L2 2575 2977 -337 609 320 126 4 chr15 87655747 87655978 -13724543 - MIR SINE MIR -2 260 2 343 131 0 0 chr15 87655997 87656058 -13724463 + AluSc SINE Alu 235 295 -4 852 121 0 0 chr15 87656149 87656273 -13724248 - AluSg/x SINE Alu 0 312 189 214 362 39 39 chr15 87656273 87656400 -13724121 + L2 LINE L2 2698 2824 -490 230 53 105 0 chr15 87656412 87656450 -13724071 - AluSg/x SINE Alu -124 179 138 240 358 42 0 chr15 87656457 87656552 -13723969 + L2 LINE L2 3125 3223 -49 213 299 31 52 chr15 87656755 87656852 -13723669 + L3 LINE CR1 901 995 -582 2292 98 0 0 chr15 87657093 87657390 -13723131 - AluSx SINE Alu -13 299 3 235 318 66 0 chr15 87657527 87657678 -13722843 + LTR67 LTR ERVL 395 555 -2 2348 72 6 28 chr15 87657788 87658107 -13722414 + AluSx SINE Alu 1 312 0 852 255 93 19 chr15 87658247 87658620 -13721901 + LTR16A1 LTR ERVL 75 455 -2 289 344 79 35 chr15 87658620 87658644 -13721877 + L3 LINE CR1 1086 1107 -470 1848 127 65 0 chr15 87658644 87658919 -13721602 + AluSx SINE Alu 1 293 -19 289 344 79 35 chr15 87658919 87659121 -13721400 + L3 LINE CR1 1107 1322 -255 1380 190 23 8 chr15 87659178 87659507 -13721014 + MLT2D LTR ERVL 1 349 -48 267 54 0 0 chr15 87659508 87659545 -13720976 + (TC)n Simple_repeat Simple_repeat 2 38 0 357 109 0 0 chr15 87659563 87659618 -13720903 + (CA)n Simple_repeat Simple_repeat 2 56 0 233 91 0 68 chr15 87659619 87659663 -13720858 + MLT2D LTR ERVL 367 407 -7 510 274 33 79 chr15 87660041 87660115 -13720406 + MIR SINE MIR 55 131 -131 2405 81 0 25 chr15 87660115 87660435 -13720086 - AluSx SINE Alu 0 312 1 510 274 33 79 chr15 87660435 87660575 -13719946 + MIR SINE MIR 131 259 -3 279 303 17 59 chr15 87660595 87660714 -13719807 + L3 LINE CR1 1376 1489 -88 257 200 0 86 chr15 87661146 87661216 -13719305 + MER91 DNA MER1_type 1 64 -76 1492 151 36 29 chr15 87661336 87661615 -13718906 + AluJo SINE Alu 21 301 -11 1798 147 37 4 chr15 87661629 87661929 -13718592 + AluSx SINE Alu 1 309 0 2006 102 14 14 chr15 87662119 87662413 -13718108 + AluSx SINE Alu 1 294 -18 1587 133 0 50 chr15 87662431 87662732 -13717789 - MLT1B LTR MaLR -102 288 3 321 230 0 0 chr15 87663717 87663791 -13716730 + L1ME4a LINE L1 5987 6060 -61 2124 115 0 34 chr15 87663899 87664245 -13716276 - AluSx SINE Alu 0 335 1 201 176 0 0 chr15 87664300 87664334 -13716187 + (TAA)n Simple_repeat Simple_repeat 1 34 0 576 267 127 12 chr15 87664334 87664551 -13715970 - MIR SINE MIR 0 262 21 213 349 0 0 chr15 87665578 87665644 -13714877 + MIR3 SINE MIR 124 189 -19 488 289 53 13 chr15 87665931 87666083 -13714438 - MIR SINE MIR -56 206 49 212 331 102 31 chr15 87666237 87666364 -13714157 + MIR SINE MIR 14 149 -113 2203 105 0 10 chr15 87666626 87666931 -13713590 - AluSc SINE Alu -7 302 1 2661 196 16 2 chr15 87667041 87667655 -13712866 - MER82 DNA MER2_type 0 653 1 2114 133 0 0 chr15 87667783 87668084 -13712437 + AluSx SINE Alu 1 301 -11 1792 160 0 32 chr15 87668197 87668509 -13712012 - AluJo SINE Alu -4 308 7 32 0 0 0 chr15 87668548 87668580 -13711941 + AT_rich Low_complexity Low_complexity 1 32 0 917 119 0 37 chr15 87669647 87669781 -13710740 + FLAM_C SINE Alu 1 129 -4 2257 106 7 3 chr15 87669830 87670122 -13710399 + AluSg SINE Alu 2 294 -16 203 321 71 0 chr15 87670193 87670277 -13710244 - L2 LINE L2 -15 3257 3168 236 264 14 14 chr15 87670444 87670516 -13710005 + LTR67 LTR ERVL 94 165 -392 998 176 5 37 chr15 87670815 87671003 -13709518 + AluJo SINE Alu 1 182 -130 260 156 0 78 chr15 87671007 87671062 -13709459 + FAM SINE Alu 119 164 -147 2481 89 0 9 chr15 87671062 87671377 -13709144 + AluSx SINE Alu 1 312 0 539 254 92 32 chr15 87671489 87671674 -13708847 - L2 LINE L2 -5 3267 3072 782 136 32 0 chr15 87673182 87673307 -13707214 - AluJb SINE Alu -181 131 3 1312 155 144 19 chr15 87673324 87673588 -13706933 - AluSg1 SINE Alu -12 297 1 341 158 53 18 chr15 87673973 87674087 -13706434 + (TA)n Simple_repeat Simple_repeat 2 119 0 250 234 0 16 chr15 87674358 87674422 -13706099 - MLT1K LTR MaLR -3 585 523 287 167 0 30 chr15 87674434 87674500 -13706021 + L1MC5 LINE L1 7606 7669 -292 1225 184 113 46 chr15 87674866 87675148 -13705373 - AluJo SINE Alu -5 307 7 379 250 34 0 chr15 87675187 87675275 -13705246 + MIR SINE MIR 124 214 -48 829 257 27 0 chr15 87675594 87675781 -13704740 + MIR SINE MIR 49 240 -22 2110 123 7 0 chr15 87675938 87676239 -13704282 + AluSx SINE Alu 1 303 -9 1985 141 0 46 chr15 87676738 87677065 -13703456 - AluSx SINE Alu 0 312 1 241 70 163 0 chr15 87677116 87677159 -13703362 - L1PB2 LINE L1 -2 6149 6100 1147 221 166 0 chr15 87677159 87677508 -13703013 - Charlie4a DNA MER1_type -70 438 32 480 113 0 0 chr15 87678599 87678670 -13701851 - tRNA-Arg-CGA tRNA tRNA -5 71 1 22 70 0 0 chr15 87679197 87679240 -13701281 + GC_rich Low_complexity Low_complexity 1 43 0 406 322 109 22 chr15 87679378 87679608 -13700913 - MIR SINE MIR 0 262 13 288 289 24 0 chr15 87679689 87679772 -13700749 + MIR SINE MIR 174 258 -4 250 269 118 17 chr15 87679851 87679970 -13700551 - MIR3 SINE MIR -51 157 27 465 97 0 0 chr15 87680101 87680173 -13700348 + (CAG)n Simple_repeat Simple_repeat 3 74 0 241 340 119 49 chr15 87680712 87680897 -13699624 - L2 LINE L2 -9 3304 3107 336 261 74 56 chr15 87681004 87681219 -13699302 - MER20 DNA MER1_type 0 219 1 274 211 44 22 chr15 87681770 87681860 -13698661 + CT-rich Low_complexity Low_complexity 4 95 0 458 307 90 11 chr15 87683936 87684125 -13696396 + MIR SINE MIR 32 235 -27 327 325 26 52 chr15 87684158 87684312 -13696209 - MIR SINE MIR -71 191 42 204 206 0 0 chr15 87684600 87684634 -13695887 + polypyrimidine Low_complexity Low_complexity 2 35 0 1729 168 98 0 chr15 87685682 87686028 -13694493 - Tigger2a DNA MER2_type -54 380 1 187 219 14 68 chr15 87686043 87686116 -13694405 + MIR SINE MIR 174 242 -20 414 288 116 0 chr15 87686150 87686296 -13694225 - MIR SINE MIR -76 186 24 222 301 221 22 chr15 87687318 87687590 -13692931 - L2 LINE L2 -4 3268 2943 330 169 0 0 chr15 87688433 87688522 -13691999 + (CTCA)n Simple_repeat Simple_repeat 2 90 0 192 292 250 0 chr15 87688726 87688822 -13691699 - MIR SINE MIR -18 244 125 231 204 0 0 chr15 87690475 87690524 -13689997 + (CGTG)n Simple_repeat Simple_repeat 1 49 0 250 211 191 59 chr15 87690899 87691051 -13689470 + MIR3 SINE MIR 18 189 -19 210 329 29 0 chr15 87691980 87692050 -13688471 - L2 LINE L2 -1 3271 3200 232 67 0 0 chr15 87693091 87693121 -13687400 - Charlie8 DNA MER1_type 0 2417 2388 301 215 74 59 chr15 87693980 87694101 -13686420 + MIR SINE MIR 24 153 -55 21 36 0 0 chr15 87695145 87695173 -13685348 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr15 87695474 87695507 -13685014 + AT_rich Low_complexity Low_complexity 1 33 0 1475 142 146 15 chr15 87698457 87698717 -13681804 + AluJo SINE Alu 1 294 -8 183 42 0 0 chr15 87699554 87699578 -13680943 + (TG)n Simple_repeat Simple_repeat 1 24 0 306 0 0 0 chr15 87699628 87699662 -13680859 + (TG)n Simple_repeat Simple_repeat 1 34 0 252 0 0 0 chr15 87699709 87699737 -13680784 + (TG)n Simple_repeat Simple_repeat 2 29 0 436 328 223 0 chr15 87699837 87700084 -13680437 - L1MC/D LINE L1 -2012 5796 5495 1208 182 66 35 chr15 87700309 87700628 -13679893 - L1MB8 LINE L1 0 6178 5850 2126 122 10 0 chr15 87700802 87701096 -13679425 - AluSx SINE Alu -11 301 5 2253 103 0 10 chr15 87702212 87702368 -13678153 - AluSg SINE Alu -23 287 134 2320 92 0 10 chr15 87702368 87702662 -13677859 - AluSg SINE Alu -19 291 1 2253 103 0 10 chr15 87702662 87702795 -13677726 - AluSg SINE Alu -176 134 1 1036 240 58 0 chr15 87703301 87703509 -13677012 + MER58A DNA MER1_type 5 224 0 381 308 144 5 chr15 87703509 87703704 -13676817 + MIR SINE MIR 31 252 -10 1583 143 49 4 chr15 87703905 87704149 -13676372 - AluJo SINE Alu -16 296 42 277 219 12 49 chr15 87704158 87704240 -13676281 + MER103 DNA DNA 66 144 -22 2295 105 3 3 chr15 87704671 87704976 -13675545 - AluSq SINE Alu -8 305 1 230 348 0 0 chr15 87705102 87705171 -13675350 - L3 LINE CR1 -1282 295 227 1116 173 35 0 chr15 87705270 87705472 -13675049 + MER20 DNA MER1_type 7 215 -4 22 0 0 0 chr15 87706650 87706672 -13673849 + AT_rich Low_complexity Low_complexity 1 22 0 2414 98 0 0 chr15 87706922 87707229 -13673292 - AluSx SINE Alu -5 307 1 180 200 50 0 chr15 87708294 87708334 -13672187 + L3b LINE CR1 1208 1249 -334 2395 91 3 0 chr15 87708563 87708860 -13671661 + AluSp SINE Alu 1 298 -15 1624 235 136 23 chr15 87709070 87709635 -13670886 - L1ME3 LINE L1 -88 6074 5446 281 284 0 0 chr15 87710455 87710529 -13669992 + L1MC4a LINE L1 5824 5897 -1911 24 0 0 29 chr15 87710743 87710765 -13669756 + AT_rich Low_complexity Low_complexity 1 23 -11 2531 61 0 0 chr15 87710765 87711060 -13669461 + AluY SINE Alu 1 295 -16 24 0 0 29 chr15 87711060 87711072 -13669449 + AT_rich Low_complexity Low_complexity 23 34 0 23 78 0 0 chr15 87711115 87711166 -13669355 + AT_rich Low_complexity Low_complexity 1 51 0 722 219 37 12 chr15 87712674 87712838 -13667683 + L2 LINE L2 3141 3308 -5 840 245 67 19 chr15 87713876 87714145 -13666376 - L1ME1 LINE L1 -5 6161 5880 2585 230 93 48 chr15 87714158 87714452 -13666069 - L1M4 LINE L1 -2421 3725 3446 2120 111 17 17 chr15 87714452 87714749 -13665772 - AluSx SINE Alu -15 297 1 2585 230 93 48 chr15 87714749 87715653 -13664868 - L1M4 LINE L1 -2700 3446 2473 291 197 15 0 chr15 87715756 87715844 -13664677 + FLAM_C SINE Alu 67 152 -1568 231 36 0 0 chr15 87715844 87715872 -13664649 + (CCCCCT)n Simple_repeat Simple_repeat 3 30 0 7381 35 15 180 chr15 87715876 87717183 -13663338 + SVA Other Other 32 1123 -263 291 197 15 0 chr15 87717183 87717240 -13663281 + FLAM_C SINE Alu 154 1551 -169 1617 155 6 102 chr15 87717242 87717378 -13663143 + AluJb SINE Alu 8 155 -157 2220 109 13 0 chr15 87717378 87717681 -13662840 + AluSx SINE Alu 1 307 -5 1617 155 6 102 chr15 87717681 87717898 -13662623 + AluJb SINE Alu 155 312 0 2282 120 0 0 chr15 87717960 87718259 -13662262 - AluSp SINE Alu -14 299 1 1063 138 58 6 chr15 87718259 87718433 -13662088 - AluSg/x SINE Alu -9 301 119 218 171 0 0 chr15 87718729 87718764 -13661757 + GA-rich Low_complexity Low_complexity 2 36 0 1984 153 3 3 chr15 87719048 87719342 -13661179 - AluSq SINE Alu -18 295 2 1695 135 0 4 chr15 87719997 87720241 -13660280 - AluSq SINE Alu -70 243 1 186 133 0 0 chr15 87720861 87720891 -13659630 + (TCC)n Simple_repeat Simple_repeat 3 32 0 591 277 119 8 chr15 87722292 87722527 -13657994 + MIR SINE MIR 2 262 0 1781 136 88 4 chr15 87723654 87723927 -13656594 + AluSx SINE Alu 1 296 -16 1995 138 0 26 chr15 87724040 87724352 -13656169 + AluSx SINE Alu 1 304 -8 1577 174 3 75 chr15 87724705 87725026 -13655495 + AluJo SINE Alu 1 298 -14 380 155 167 113 chr15 87725339 87725507 -13655014 + MER68 LTR ERV1 10 186 -376 8793 121 18 11 chr15 87725509 87726374 -13654147 + Tigger1 DNA MER2_type 3 883 -1535 2448 69 20 3 chr15 87726374 87726678 -13653843 + AluSc SINE Alu 1 309 0 8793 121 18 11 chr15 87726678 87727217 -13653304 + Tigger1 DNA MER2_type 883 1417 -1001 2100 124 0 29 chr15 87727364 87727671 -13652850 + AluSx SINE Alu 1 298 -14 33 43 0 0 chr15 87727947 87727994 -13652527 + AT_rich Low_complexity Low_complexity 1 47 0 1243 136 195 36 chr15 87728035 87728286 -13652235 - AluJo SINE Alu -21 291 1 21 36 0 0 chr15 87728372 87728400 -13652121 + AT_rich Low_complexity Low_complexity 1 28 0 520 276 0 3 chr15 87729086 87729224 -13651297 + MIR SINE MIR 40 176 -32 464 170 11 21 chr15 87729477 87729571 -13650950 + MIR SINE MIR 137 229 -33 2358 62 10 32 chr15 87729598 87729907 -13650614 + AluY SINE Alu 1 302 -9 1014 141 109 42 chr15 87729923 87730206 -13650315 - MER33 DNA MER1_type -22 302 1 306 50 0 0 chr15 87730248 87730288 -13650233 + (CAT)n Simple_repeat Simple_repeat 2 41 0 838 276 23 0 chr15 87731468 87731685 -13648836 + MIR SINE MIR 3 224 -38 2264 103 0 3 chr15 87733339 87733639 -13646882 + AluSc SINE Alu 1 299 -10 2028 128 18 0 chr15 87734201 87734522 -13645999 + AluSx SINE Alu 1 326 0 25 0 0 0 chr15 87735590 87735615 -13644906 + AT_rich Low_complexity Low_complexity 1 25 0 2131 145 13 0 chr15 87736020 87736323 -13644198 - AluJb SINE Alu -5 307 1 257 260 14 55 chr15 87737354 87737427 -13643094 + L2 LINE L2 3203 3272 0 897 209 31 123 chr15 87738423 87738749 -13641772 + AluJo SINE Alu 2 297 -5 2049 155 0 0 chr15 87738750 87739060 -13641461 + AluJb SINE Alu 1 310 -2 189 74 0 0 chr15 87739510 87739537 -13640984 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 216 0 0 0 chr15 87740121 87740145 -13640376 + (T)n Simple_repeat Simple_repeat 1 24 0 1698 138 44 78 chr15 87740318 87740638 -13639883 - AluJo SINE Alu -3 309 1 1781 124 16 4 chr15 87740689 87740938 -13639583 + AluSx SINE Alu 1 252 -60 25 51 0 0 chr15 87740966 87741005 -13639516 + AT_rich Low_complexity Low_complexity 1 39 0 3545 204 25 38 chr15 87741013 87741871 -13638650 + L1MB8 LINE L1 4994 5827 -351 1322 206 68 20 chr15 87741871 87742167 -13638354 + AluJo SINE Alu 1 310 -2 3545 204 25 38 chr15 87742167 87742515 -13638006 + L1MB8 LINE L1 5827 6178 0 1036 227 97 14 chr15 87742719 87743080 -13637441 + L1MC4 LINE L1 6772 7162 -880 279 300 40 45 chr15 87743171 87743418 -13637103 + L1MC4 LINE L1 7189 7434 -608 1288 193 45 57 chr15 87743419 87743546 -13636975 + MER58B DNA MER1_type 1 128 -2292 2103 128 7 0 chr15 87743546 87743842 -13636679 + AluSx SINE Alu 1 298 -14 1288 193 45 57 chr15 87743842 87744046 -13636475 + MER58B DNA MER1_type 128 328 -13 1107 203 148 57 chr15 87744048 87744596 -13635925 + L1MC4 LINE L1 7445 8042 0 1551 138 104 8 chr15 87745290 87745558 -13634963 + AluJb SINE Alu 6 299 -13 806 258 221 70 chr15 87745679 87745722 -13634799 + L2 LINE L2 1708 1743 -1571 1916 160 3 3 chr15 87745722 87746009 -13634512 - AluJb SINE Alu -23 289 3 806 258 221 70 chr15 87746009 87746323 -13634198 + L2 LINE L2 1743 2009 -1305 1653 172 4 0 chr15 87746323 87746584 -13633937 - AluSq SINE Alu -19 294 33 806 258 221 70 chr15 87746584 87746792 -13633729 + L2 LINE L2 2009 2359 -955 1719 149 23 48 chr15 87746883 87747026 -13633495 + AluSx SINE Alu 2 147 -165 2305 100 0 0 chr15 87747026 87747326 -13633195 + AluSx SINE Alu 1 300 -12 1719 149 23 48 chr15 87747326 87747491 -13633030 + AluSx SINE Alu 147 302 -10 1102 159 11 0 chr15 87747494 87747670 -13632851 + FRAM SINE Alu 1 176 0 305 281 298 0 chr15 87747694 87747815 -13632706 + MIR SINE MIR 96 252 -10 2303 100 10 3 chr15 87747836 87748146 -13632375 + AluSx SINE Alu 1 312 0 2099 142 3 0 chr15 87748151 87748461 -13632060 + AluSx SINE Alu 1 311 -1 678 277 166 20 chr15 87748470 87748820 -13631701 + L2 LINE L2 2895 3295 -18 264 240 190 34 chr15 87750361 87750540 -13629981 + L1MC4a LINE L1 5407 5613 -508 727 176 0 22 chr15 87750624 87750760 -13629761 + FLAM_C SINE Alu 1 133 -10 335 232 197 25 chr15 87750763 87750961 -13629560 + L1MC4a LINE L1 5695 5926 -1882 207 100 0 0 chr15 87751394 87751424 -13629097 + (A)n Simple_repeat Simple_repeat 1 30 0 1857 125 10 27 chr15 87752380 87752676 -13627845 - AluJb SINE Alu -21 291 1 2687 173 88 8 chr15 87753529 87754123 -13626398 + L1MB8 LINE L1 5476 6116 -62 1093 313 93 63 chr15 87755202 87755896 -13624625 - L2 LINE L2 0 3272 2600 2439 138 60 27 chr15 87755896 87756346 -13624175 + MLT1C LTR MaLR 3 467 0 1093 313 93 63 chr15 87756346 87756454 -13624067 - L2 LINE L2 -672 2600 2497 2501 75 0 0 chr15 87756454 87756762 -13623759 + AluY SINE Alu 1 308 -3 1093 313 93 63 chr15 87756762 87757162 -13623359 - L2 LINE L2 -775 2497 2013 1138 188 34 0 chr15 87757318 87757526 -13622995 + MER20 DNA MER1_type 1 215 -4 379 291 55 9 chr15 87757589 87757699 -13622822 + MIR SINE MIR 20 134 -128 726 230 146 8 chr15 87758003 87758264 -13622257 - L1MC4 LINE L1 -507 7535 7239 1251 286 14 12 chr15 87758267 87758694 -13621827 + L1MC4a LINE L1 7246 7673 -135 249 243 235 0 chr15 87758702 87758838 -13621683 - L1MC4 LINE L1 -805 7237 7070 1337 177 8 35 chr15 87758849 87759103 -13621418 - AluJo SINE Alu -30 282 36 1338 201 45 21 chr15 87759104 87759437 -13621084 - L1MC4 LINE L1 -961 7081 6741 22 0 0 0 chr15 87759437 87759459 -13621062 + AT_rich Low_complexity Low_complexity 1 22 0 802 151 8 0 chr15 87759459 87759578 -13620943 - AluJb SINE Alu -187 125 6 287 286 0 0 chr15 87759580 87759664 -13620857 - L1MC4 LINE L1 -1288 6754 6671 434 127 0 0 chr15 87759667 87759730 -13620791 + AluS SINE Alu 1 63 -255 356 279 70 12 chr15 87759740 87760111 -13620410 - L1M LINE L1 -743 5403 5038 204 40 0 0 chr15 87760115 87760140 -13620381 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 688 227 35 0 chr15 87760144 87760285 -13620236 - FRAM SINE Alu -30 146 1 1245 274 92 74 chr15 87760286 87760934 -13619587 - L1M4 LINE L1 -1105 5041 4406 1999 92 0 0 chr15 87760934 87761183 -13619338 - AluSx SINE Alu -51 261 13 1245 274 92 74 chr15 87761183 87761327 -13619194 - L1M4 LINE L1 -1740 4406 4266 2263 130 0 3 chr15 87761327 87761635 -13618886 - AluSx SINE Alu -5 307 1 1245 274 92 74 chr15 87761635 87762953 -13617568 - L1M4 LINE L1 -1880 4266 2883 4943 39 0 2 chr15 87762953 87763543 -13616978 - L1PA5 LINE L1 -8 6146 5558 1245 274 92 74 chr15 87763543 87763755 -13616766 - L1M4 LINE L1 -3263 2883 2676 353 269 54 0 chr15 87763767 87763934 -13616587 - L1MEd LINE L1 -5024 1095 920 1731 178 7 0 chr15 87764005 87764297 -13616224 + AluJb SINE Alu 1 294 -18 397 268 119 18 chr15 87764450 87764618 -13615903 + L3 LINE CR1 634 818 -759 640 156 119 0 chr15 87764638 87764747 -13615774 - FLAM_C SINE Alu -21 122 1 300 225 233 17 chr15 87764840 87764960 -13615561 + L3 LINE CR1 939 1084 -493 22 0 0 0 chr15 87765774 87765796 -13614725 + AT_rich Low_complexity Low_complexity 1 22 0 607 139 0 43 chr15 87766484 87766586 -13613935 + FRAM SINE Alu 66 164 -148 2451 58 3 13 chr15 87766586 87766897 -13613624 + AluY SINE Alu 1 308 -3 607 139 0 43 chr15 87766897 87766909 -13613612 + FRAM SINE Alu 164 175 -1 230 314 73 55 chr15 87767191 87767411 -13613110 - L2 LINE L2 -527 2787 2564 1058 254 97 84 chr15 87767515 87768160 -13612361 + L2 LINE L2 2367 3028 -244 2192 83 0 83 chr15 87768160 87768497 -13612024 + AluSc SINE Alu 1 309 0 1058 254 97 84 chr15 87768497 87768742 -13611779 + L2 LINE L2 3028 3268 -4 572 281 29 46 chr15 87768741 87768979 -13611542 - MIR SINE MIR -15 247 14 * 233 218 115 39 chr15 87770116 87770194 -13610327 + L2 LINE L2 3184 3267 -5 237 214 18 18 chr15 87771588 87771644 -13608877 - MER115 DNA AcHobo -7 686 631 * 718 288 148 18 chr15 87771634 87771912 -13608609 - MER115 DNA AcHobo -265 428 115 2416 150 14 48 chr15 87772070 87772203 -13608318 + L1MB2 LINE L1 5652 5788 -383 2259 102 3 10 chr15 87772203 87772496 -13608025 + AluSc SINE Alu 1 291 -18 2416 150 14 48 chr15 87772496 87772679 -13607842 + L1MB2 LINE L1 5788 5947 -224 2220 128 0 0 chr15 87772679 87772977 -13607544 + AluSx SINE Alu 1 298 -14 2416 150 14 48 chr15 87772977 87773160 -13607361 + L1MB2 LINE L1 5947 6135 -36 218 278 14 28 chr15 87773269 87773341 -13607180 + L2 LINE L2 3232 3302 -11 3601 104 8 6 chr15 87773356 87773866 -13606655 + MER9 LTR ERVK 1 511 0 4095 93 16 20 chr15 87773866 87774479 -13606042 + HERVK9 LTR ERVK 1 611 -5305 31598 85 6 2 chr15 87774480 87776675 -13603846 + HERVK9 LTR ERVK 1348 3567 -2349 2463 59 0 30 chr15 87776675 87776978 -13603543 - AluY SINE Alu -17 294 1 31598 85 6 2 chr15 87776978 87779054 -13601467 + HERVK9 LTR ERVK 3567 5634 -282 2038 138 6 5 chr15 87779095 87779430 -13601091 + HERVK9 LTR ERVK 4922 5914 -2 3537 108 12 10 chr15 87779433 87779943 -13600578 + MER9 LTR ERVK 1 511 0 2235 86 4 4 chr15 87779943 87780222 -13600299 - AluSc SINE Alu -30 279 1 1061 98 0 0 chr15 87780588 87780720 -13599801 - AluY SINE Alu -179 132 1 547 128 0 0 chr15 87780723 87780809 -13599712 - AluS SINE Alu 0 312 227 1235 185 45 25 chr15 87780809 87780856 -13599665 + L1MC4 LINE L1 6265 6310 -49 1609 170 148 6 chr15 87780856 87781174 -13599347 - MLT1A1 LTR MaLR -2 363 1 1235 185 45 25 chr15 87781174 87781410 -13599111 + L1MC4 LINE L1 6310 6359 0 216 261 88 50 chr15 87781519 87781779 -13598742 + L2 LINE L2 652 921 -2393 2385 87 0 19 chr15 87781814 87782160 -13598361 - AluSc SINE Alu 0 340 1 2314 112 0 0 chr15 87782175 87782479 -13598042 - AluSg SINE Alu -6 304 1 1705 174 29 0 chr15 87782485 87782766 -13597755 - AluJo SINE Alu -18 294 6 193 361 169 14 chr15 87782766 87782979 -13597542 + L2 LINE L2 1061 1306 -2008 308 355 95 0 chr15 87783413 87783602 -13596919 + L2 LINE L2 1690 1896 -1418 1195 96 0 0 chr15 87783617 87783774 -13596747 - AluSx SINE Alu -2 310 154 947 183 18 0 chr15 87783806 87783970 -13596551 - AluJo SINE Alu -97 215 49 * 1215 75 0 0 chr15 87783969 87784115 -13596406 - AluSx SINE Alu -167 146 1 355 253 13 0 chr15 87784198 87784273 -13596248 + L2 LINE L2 3185 3260 -12 211 298 67 109 chr15 87784323 87784631 -13595890 + L2 LINE L2 2800 3103 -169 432 200 67 60 chr15 87784715 87784745 -13595776 + MER103 DNA DNA 15 43 -123 1696 199 10 0 chr15 87784745 87785042 -13595479 - AluJo SINE Alu -12 300 1 432 200 67 60 chr15 87785042 87785161 -13595360 + MER103 DNA DNA 43 165 -1 426 286 150 0 chr15 87785246 87785379 -13595142 + L2 LINE L2 3116 3268 -4 2244 108 3 0 chr15 87785444 87785740 -13594781 + AluSx SINE Alu 1 297 -15 338 297 66 30 chr15 87786401 87786631 -13593890 + MIR3 SINE MIR 14 258 -4 200 213 53 149 chr15 87787079 87787124 -13593397 - MIR SINE MIR -65 143 148 2256 130 23 36 chr15 87787124 87787515 -13593006 - MLT1B LTR MaLR 0 390 5 200 213 53 149 chr15 87787515 87787563 -13592958 - MIR SINE MIR -59 149 98 522 0 0 0 chr15 87787850 87787908 -13592613 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 978 167 13 0 chr15 87787913 87788069 -13592452 - FAM SINE Alu -19 166 9 378 43 0 0 chr15 87788094 87788141 -13592380 + MLT1B LTR MaLR 100 146 -244 409 261 0 0 chr15 87788147 87788239 -13592282 - MER5A DNA MER1_type -84 105 14 1025 158 122 40 chr15 87788282 87788336 -13592185 - Charlie5 DNA MER1_type -36 2588 2540 1622 179 0 55 chr15 87788336 87788481 -13592040 + AluJo SINE Alu 1 123 -189 2290 77 0 14 chr15 87788481 87788791 -13591730 + AluSx SINE Alu 1 306 0 1622 179 0 55 chr15 87788791 87788956 -13591565 + AluJo SINE Alu 123 295 -17 1693 192 0 35 chr15 87788959 87789100 -13591421 + AluJo SINE Alu 1 145 -167 2263 103 10 0 chr15 87789100 87789391 -13591130 + AluSx SINE Alu 1 294 -18 1693 192 0 35 chr15 87789391 87789562 -13590959 + AluJo SINE Alu 145 302 -10 351 0 0 0 chr15 87789568 87789607 -13590914 + (TG)n Simple_repeat Simple_repeat 2 40 0 1916 137 4 0 chr15 87789608 87789878 -13590643 - AluSx SINE Alu -21 291 21 1025 158 122 40 chr15 87789878 87790138 -13590383 - Charlie5 DNA MER1_type -88 2536 2234 34 42 0 0 chr15 87790139 87790187 -13590334 + AT_rich Low_complexity Low_complexity 1 48 0 2184 100 4 0 chr15 87790191 87790470 -13590051 + AluSx SINE Alu 1 280 -32 23 0 0 0 chr15 87790516 87790539 -13589982 + AT_rich Low_complexity Low_complexity 1 23 0 352 347 20 0 chr15 87790936 87791086 -13589435 + L3 LINE CR1 1259 1411 -166 349 289 149 51 chr15 87791277 87791512 -13589009 - MIR SINE MIR -3 259 2 505 93 0 0 chr15 87792277 87792352 -13588169 + MER53 DNA DNA 9 83 -106 2441 75 0 3 chr15 87792370 87792662 -13587859 + AluSq SINE Alu 14 304 -9 741 243 40 6 chr15 87793249 87793422 -13587099 - MIR SINE MIR -37 225 47 279 222 9 17 chr15 87793491 87793563 -13586958 + MIR SINE MIR 12 86 -122 261 207 44 126 chr15 87793611 87793746 -13586775 + L3 LINE CR1 1177 1300 -277 424 278 85 40 chr15 87793914 87794090 -13586431 + MIR SINE MIR 35 218 -44 563 273 16 16 chr15 87794361 87794548 -13585973 + MER5A DNA MER1_type 1 187 -2 234 242 16 16 chr15 87794724 87794786 -13585735 + CT-rich Low_complexity Low_complexity 4 65 0 448 331 0 0 chr15 87795426 87795547 -13584974 + MIR3 SINE MIR 38 158 -50 565 276 55 15 chr15 87795906 87796105 -13584416 + MIR SINE MIR 56 262 0 257 208 75 0 chr15 87796641 87796694 -13583827 + MIR SINE MIR 89 145 -63 2452 91 3 0 chr15 87797044 87797352 -13583169 + AluSp SINE Alu 1 309 -4 1070 275 90 10 chr15 87797452 87797852 -13582669 - L2 LINE L2 -5 3308 2877 288 180 44 182 chr15 87798174 87798362 -13582159 - MIR SINE MIR -56 206 34 2372 104 0 3 chr15 87799178 87799487 -13581034 - AluSx SINE Alu -4 308 1 490 305 32 48 chr15 87799495 87799993 -13580528 - L1M4 LINE L1 -1201 4945 4456 326 243 0 0 chr15 87799997 87800067 -13580454 + AluJ/FRAM SINE Alu 226 295 -7 637 316 32 41 chr15 87800088 87800525 -13579996 - L1M4 LINE L1 -1696 4450 4018 689 262 204 23 chr15 87800580 87800633 -13579888 - L1ME4a LINE L1 -2 6119 6077 2330 95 0 14 chr15 87800633 87800929 -13579592 + AluSx SINE Alu 1 292 -20 689 262 204 23 chr15 87800929 87801015 -13579506 - L1ME4a LINE L1 -44 6077 6008 294 95 0 0 chr15 87801015 87801057 -13579464 + (CA)n Simple_repeat Simple_repeat 1 42 0 2345 104 0 10 chr15 87801057 87801366 -13579155 - AluSq SINE Alu -7 306 1 689 262 204 23 chr15 87801366 87801651 -13578870 - L1ME4a LINE L1 -112 6009 5616 384 301 14 27 chr15 87802157 87802303 -13578218 - MIR3 SINE MIR -62 146 3 203 300 78 11 chr15 87802324 87802414 -13578107 - L3b LINE CR1 -134 1449 1354 2031 142 3 10 chr15 87804202 87804504 -13576017 - AluJo SINE Alu -12 300 1 222 253 0 0 chr15 87805014 87805097 -13575424 + (TATATG)n Simple_repeat Simple_repeat 4 86 0 1981 142 3 0 chr15 87805397 87805679 -13574842 + AluJb SINE Alu 12 294 -18 216 244 165 12 chr15 87805761 87805925 -13574596 - L2 LINE L2 -1304 2010 1822 2401 93 3 0 chr15 87805932 87806234 -13574287 + AluSx SINE Alu 1 303 -9 2280 119 3 0 chr15 87806983 87807294 -13573227 - AluSp SINE Alu 0 313 2 2491 99 0 0 chr15 87807656 87807968 -13572553 - AluSx SINE Alu 0 312 1 193 147 0 29 chr15 87808136 87808170 -13572351 - MER5A DNA MER1_type -114 75 43 1441 167 50 57 chr15 87808191 87808473 -13572048 + AluJo SINE Alu 1 280 -32 518 0 16 0 chr15 87808473 87808535 -13571986 + (GA)n Simple_repeat Simple_repeat 2 64 0 341 318 87 9 chr15 87809124 87809188 -13571333 - MIR SINE MIR -71 191 133 243 0 0 0 chr15 87809188 87809215 -13571306 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 341 318 87 9 chr15 87809215 87809321 -13571200 - MIR SINE MIR -129 133 7 2382 84 7 0 chr15 87810357 87810654 -13569867 - AluSp SINE Alu -14 299 1 1733 170 37 0 chr15 87810777 87811071 -13569450 + AluJb SINE Alu 1 305 -7 2430 78 3 0 chr15 87812564 87812859 -13567662 - AluSq SINE Alu -17 296 1 1139 143 18 27 chr15 87813157 87813381 -13567140 + SVA Other Other 455 676 -710 21 57 0 0 chr15 87813458 87813493 -13567028 + AT_rich Low_complexity Low_complexity 1 35 0 310 250 60 0 chr15 87814979 87815063 -13565458 - MIR SINE MIR -73 135 47 342 270 79 24 chr15 87817186 87817312 -13563209 - MIR3 SINE MIR -11 197 65 450 313 0 23 chr15 87817486 87817662 -13562859 + MER5B DNA MER1_type 1 172 -6 607 159 23 159 chr15 87818684 87818853 -13561668 + MER5B DNA MER1_type 5 149 -29 555 232 181 13 chr15 87818853 87819008 -13561513 - MER5A DNA MER1_type 0 189 9 1617 95 63 5 chr15 87819221 87819443 -13561078 - AluSx SINE Alu -77 235 1 1243 137 0 22 chr15 87819534 87819717 -13560804 - AluJo/FRAM SINE Alu 0 312 134 1649 154 106 0 chr15 87819717 87819990 -13560531 - AluSx SINE Alu -10 302 1 1648 131 3 125 chr15 87820809 87821153 -13559368 + AluJo SINE Alu 1 302 0 1119 318 103 47 chr15 87821337 87821732 -13558789 + L3 LINE CR1 601 972 -605 2503 85 0 0 chr15 87821732 87822037 -13558484 + AluSg SINE Alu 1 305 -5 1119 318 103 47 chr15 87822037 87822368 -13558153 + L3 LINE CR1 972 1368 -209 494 275 69 0 chr15 87822801 87822961 -13557560 + MIR SINE MIR 16 186 -76 1756 157 0 42 chr15 87824141 87824454 -13556067 - AluJo SINE Alu -12 300 1 310 183 17 0 chr15 87824683 87824743 -13555778 - Charlie8 DNA MER1_type -1963 454 394 869 209 5 29 chr15 87824746 87824952 -13555569 - AluJb SINE Alu 0 312 112 382 302 29 22 chr15 87825091 87825230 -13555291 - Charlie8 DNA MER1_type -2205 212 73 2213 104 7 0 chr15 87827674 87827971 -13552550 - AluSx SINE Alu -13 299 1 378 0 0 0 chr15 87830242 87830284 -13550237 + (TA)n Simple_repeat Simple_repeat 2 43 0 961 222 51 46 chr15 87830352 87830451 -13550070 + L1MC5 LINE L1 7480 7577 -384 204 40 0 0 chr15 87830451 87830476 -13550045 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 961 222 51 46 chr15 87830476 87830768 -13549753 + L1MC5 LINE L1 7577 7873 -88 1991 135 0 22 chr15 87830856 87831168 -13549353 - AluSx SINE Alu -7 305 1 282 121 48 72 chr15 87832381 87832421 -13548100 - L1MB2 LINE L1 -7 6164 6125 2420 79 0 10 chr15 87832421 87832726 -13547795 - AluSg SINE Alu -8 302 1 282 121 48 72 chr15 87832726 87832768 -13547753 - L1MB2 LINE L1 -46 6125 6084 229 286 24 12 chr15 87832790 87832874 -13547647 - L1MB2 LINE L1 -1999 5809 5725 2870 129 6 75 chr15 87833942 87834432 -13546089 - MER1A DNA MER1_type -27 502 47 293 272 0 12 chr15 87834819 87834900 -13545621 + L2 LINE L2 3199 3278 -35 328 252 0 79 chr15 87836139 87836266 -13544255 + MER5A DNA MER1_type 44 160 -29 418 217 17 61 chr15 87836392 87836507 -13544014 - MIR SINE MIR -29 233 124 197 160 0 20 chr15 87836967 87837017 -13543504 + (TG)n Simple_repeat Simple_repeat 1 49 0 1078 150 112 0 chr15 87838249 87838462 -13542059 + AluJb SINE Alu 82 315 0 396 295 8 8 chr15 87839194 87839316 -13541205 - MER5A DNA MER1_type -2 187 66 603 220 127 0 chr15 87839521 87839671 -13540850 - L1ME3 LINE L1 -1 6161 5993 2220 122 3 0 chr15 87840076 87840380 -13540141 - AluSx SINE Alu -7 305 1 528 289 19 6 chr15 87840871 87841030 -13539491 + MIR SINE MIR 85 245 -17 2874 126 55 4 chr15 87841068 87841537 -13538984 + L1MB2 LINE L1 5677 6169 -2 271 130 19 37 chr15 87841589 87841643 -13538878 + MER5B DNA MER1_type 2 54 -124 253 325 0 0 chr15 87841645 87841722 -13538799 - LTR67 LTR ERVL -54 503 427 412 235 8 53 chr15 87841724 87841856 -13538665 + MER5B DNA MER1_type 31 156 -22 641 165 9 0 chr15 87842259 87842374 -13538147 + MER5A DNA MER1_type 1 116 -73 715 163 23 0 chr15 87842381 87842510 -13538011 - MER5A DNA MER1_type -57 132 1 2388 68 14 0 chr15 87842540 87842836 -13537685 - AluSq SINE Alu -13 300 1 1035 261 114 39 chr15 87842862 87843275 -13537246 + L1MC4a LINE L1 5382 5838 -1970 2368 106 3 3 chr15 87843275 87843587 -13536934 + AluSx SINE Alu 1 312 0 1035 261 114 39 chr15 87843587 87843656 -13536865 + L1MC4a LINE L1 5838 5900 -1908 304 296 113 0 chr15 87844156 87844271 -13536250 + L2 LINE L2 3186 3313 0 198 322 34 0 chr15 87844318 87844377 -13536144 - MIR SINE MIR -71 137 77 1756 143 9 70 chr15 87844552 87844881 -13535640 - AluJb SINE Alu -3 309 1 277 246 0 0 chr15 87846688 87846749 -13533772 - MER94 DNA DNA -65 69 9 905 159 104 22 chr15 87846855 87847037 -13533484 - AluJo SINE Alu -18 294 98 639 115 0 0 chr15 87847076 87847163 -13533358 - AluJb SINE Alu -14 298 212 774 173 8 0 chr15 87848072 87848199 -13532322 - FLAM_A SINE Alu -5 128 1 23 33 0 0 chr15 87848356 87848386 -13532135 + AT_rich Low_complexity Low_complexity 1 30 0 1694 161 39 4 chr15 87848880 87849160 -13531361 - AluSx SINE Alu -16 296 7 519 250 168 52 chr15 87849702 87849934 -13530587 + MIR SINE MIR 2 260 -2 391 243 196 7 chr15 87850090 87850238 -13530283 + MIR SINE MIR 54 229 -33 521 250 60 91 chr15 87850732 87851096 -13529425 - L2 LINE L2 -7 3306 2954 801 214 57 129 chr15 87851298 87851476 -13529045 + L1MC5 LINE L1 7507 7696 -265 2189 149 13 28 chr15 87851476 87851872 -13528649 + MLT1B LTR MaLR 1 390 0 801 214 57 129 chr15 87851872 87851970 -13528551 + L1MC5 LINE L1 7696 7799 -162 2266 108 0 0 chr15 87851970 87852266 -13528255 + AluSx SINE Alu 1 296 -16 801 214 57 129 chr15 87852266 87852446 -13528075 + L1MC5 LINE L1 7799 7931 -30 1034 227 133 35 chr15 87852792 87853109 -13527412 + MLT1I LTR MaLR 60 407 -2 1549 92 0 0 chr15 87854285 87854480 -13526041 - AluSg/x SINE Alu -21 289 95 553 154 0 2 chr15 87854718 87854973 -13525548 + AluJ SINE Alu 6 309 0 262 252 96 52 chr15 87855043 87855178 -13525343 - MIR3 SINE MIR -47 161 21 456 272 118 20 chr15 87855355 87855550 -13524971 + MIR SINE MIR 29 242 -20 320 314 103 48 chr15 87855612 87855810 -13524711 - L3 LINE CR1 -685 892 676 2467 72 0 7 chr15 87855810 87856115 -13524406 - AluY SINE Alu -8 303 1 320 314 103 48 chr15 87856115 87856168 -13524353 - L3 LINE CR1 -901 676 627 347 291 90 27 chr15 87856307 87856560 -13523961 + L1ME LINE L1 5511 5779 -342 1608 118 105 0 chr15 87856941 87857179 -13523342 - AluSx SINE Alu -16 296 34 305 97 0 5 chr15 87857240 87857299 -13523222 + Alu SINE Alu 1 43 -265 2334 88 0 7 chr15 87857405 87857711 -13522810 + AluY SINE Alu 1 304 -7 418 273 58 6 chr15 87857951 87858123 -13522398 + MIR SINE MIR 2 182 -80 764 186 153 0 chr15 87858626 87858841 -13521680 - MER5C DNA MER1_type 0 324 77 906 254 30 39 chr15 87858887 87859225 -13521296 + L1MC4a LINE L1 5603 5937 -1871 454 226 170 75 chr15 87859505 87859580 -13520941 + L1ME4a LINE L1 5533 5599 -522 741 258 6 6 chr15 87859580 87859743 -13520778 + FAM SINE Alu 4 166 -9 454 226 170 75 chr15 87859743 87859973 -13520548 + L1ME4a LINE L1 5599 5867 -254 364 199 199 0 chr15 87860005 87860141 -13520380 + L1ME4a LINE L1 5959 6121 0 575 271 110 8 chr15 87860539 87860775 -13519746 - L2 LINE L2 -111 3202 2943 453 207 43 26 chr15 87861216 87861332 -13519189 + MIR SINE MIR 110 227 -35 2492 50 0 13 chr15 87861448 87861749 -13518772 + AluY SINE Alu 1 297 -14 260 284 11 42 chr15 87864114 87864209 -13516312 + L2 LINE L2 2930 3021 -251 32 43 0 0 chr15 87864425 87864471 -13516050 + AT_rich Low_complexity Low_complexity 1 46 0 273 29 0 0 chr15 87864578 87864612 -13515909 + (TG)n Simple_repeat Simple_repeat 2 35 0 342 248 31 31 chr15 87865089 87865218 -13515303 + MLT1H LTR MaLR 114 242 -307 694 316 79 60 chr15 87865257 87865685 -13514836 - L1MC/D LINE L1 -759 5387 4969 2265 89 0 32 chr15 87865685 87866000 -13514521 - AluSx SINE Alu -7 305 1 694 316 79 60 chr15 87866000 87866750 -13513771 - L1MC/D LINE L1 -1177 4969 4412 408 88 0 0 chr15 87867020 87867077 -13513444 + (CA)n Simple_repeat Simple_repeat 1 57 0 315 263 68 25 chr15 87867449 87867567 -13512954 - LTR67 LTR ERVL -2 555 433 195 42 0 0 chr15 87868152 87868176 -13512345 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2123 112 4 0 chr15 87868180 87868458 -13512063 - AluSx SINE Alu -33 279 1 1930 166 47 3 chr15 87868586 87868948 -13511573 - L1MB5 LINE L1 -9 6165 5788 989 176 21 51 chr15 87869056 87869275 -13511246 - L1MB5 LINE L1 -594 5580 5366 2364 70 3 51 chr15 87869323 87869639 -13510882 - AluSp SINE Alu -12 301 1 275 344 44 12 chr15 87870780 87870940 -13509581 - MIR SINE MIR -70 192 28 2050 109 35 3 chr15 87871392 87871675 -13508846 - AluSx SINE Alu -20 292 1 1765 155 46 0 chr15 87871744 87871867 -13508654 + AluJo SINE Alu 1 117 -195 225 0 0 0 chr15 87871867 87871892 -13508629 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 1765 155 46 0 chr15 87871892 87872052 -13508469 + AluJo SINE Alu 117 297 -15 225 65 0 0 chr15 87872410 87872441 -13508080 + (TG)n Simple_repeat Simple_repeat 1 31 0 1774 187 17 0 chr15 87873792 87874091 -13506430 - AluJb SINE Alu -8 304 1 2285 96 3 10 chr15 87876796 87877098 -13503423 + AluSq SINE Alu 1 300 -13 276 30 0 0 chr15 87877144 87877177 -13503344 + (TTCTG)n Simple_repeat Simple_repeat 1 33 0 222 207 0 0 chr15 87877405 87877463 -13503058 + GA-rich Low_complexity Low_complexity 3 60 0 195 42 0 0 chr15 87877863 87877887 -13502634 + (A)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr15 87877932 87877956 -13502565 + AT_rich Low_complexity Low_complexity 1 24 0 1323 265 112 35 chr15 87878256 87878887 -13501634 + L1MC4a LINE L1 4490 4804 -1342 2550 56 0 7 chr15 87878887 87879190 -13501331 + AluY SINE Alu 1 301 -10 1323 265 112 35 chr15 87879190 87879834 -13500687 + L1MC4a LINE L1 4804 5397 -749 858 272 111 37 chr15 87881014 87881529 -13498992 - HAL1 LINE L1 -90 2417 1865 252 343 134 0 chr15 87881847 87882019 -13498502 - L2 LINE L2 -557 2757 2563 854 242 42 72 chr15 87882123 87882156 -13498365 + MLT1I LTR MaLR 88 120 -289 1529 117 31 5 chr15 87882156 87882378 -13498143 + MER30 DNA MER1_type 1 228 -2 1474 72 10 5 chr15 87882380 87882573 -13497948 - MER107 DNA MER1_type 0 197 4 854 242 42 72 chr15 87882573 87882867 -13497654 + MLT1I LTR MaLR 121 408 -1 463 299 87 39 chr15 87883148 87883379 -13497142 - MIR SINE MIR 0 262 21 210 361 61 22 chr15 87883924 87884154 -13496367 + L2 LINE L2 2341 2579 -735 402 74 0 0 chr15 87885278 87885332 -13495189 + (TA)n Simple_repeat Simple_repeat 2 55 0 475 202 121 0 chr15 87887332 87887431 -13493090 - MER81 DNA DNA -1 113 3 2191 96 0 30 chr15 87887757 87887922 -13492599 - AluSc SINE Alu -17 292 139 2460 78 0 0 chr15 87887922 87888218 -13492303 - AluSq SINE Alu -17 296 1 2191 96 0 30 chr15 87888218 87888353 -13492168 - AluSc SINE Alu -170 139 1 1727 177 9 40 chr15 87889117 87889439 -13491082 + AluJb SINE Alu 1 312 0 1745 166 7 11 chr15 87890895 87891178 -13489343 + AluJo SINE Alu 1 282 -30 430 204 54 0 chr15 87891455 87891548 -13488973 + L1ME3 LINE L1 6064 6161 -1 297 309 88 52 chr15 87891735 87891929 -13488592 - MIR3 SINE MIR -7 201 1 287 218 18 0 chr15 87892185 87892240 -13488281 - U7 snRNA snRNA -1 62 7 2232 102 3 23 chr15 87892241 87892544 -13487977 + AluSg SINE Alu 1 297 -13 208 228 27 34 chr15 87893423 87893511 -13487010 + MIR SINE MIR 101 190 -60 2158 105 44 3 chr15 87894553 87894849 -13485672 + AluSx SINE Alu 1 308 -4 2240 105 0 0 chr15 87895704 87895989 -13484532 + AluSx SINE Alu 6 290 -22 555 16 0 0 chr15 87897593 87897657 -13482864 + (CA)n Simple_repeat Simple_repeat 2 65 0 2153 122 6 3 chr15 87898242 87898554 -13481967 + AluSq SINE Alu 1 313 0 882 261 46 0 chr15 87900002 87900243 -13480278 - MIR SINE MIR -8 254 3 280 160 20 0 chr15 87900325 87900375 -13480146 - MIR SINE MIR -163 99 49 1092 179 49 42 chr15 87900632 87900895 -13479626 + Charlie8 DNA MER1_type 1 265 -2152 27 62 0 0 chr15 87901045 87901093 -13479428 + AT_rich Low_complexity Low_complexity 1 48 0 992 249 71 62 chr15 87901296 87901649 -13478872 + MLT1J LTR MaLR 111 466 -45 1744 134 86 10 chr15 87902663 87902953 -13477568 + AluSx SINE Alu 1 312 0 1170 147 29 0 chr15 87902982 87903186 -13477335 - MER2 DNA MER2_type -135 210 1 581 244 11 44 chr15 87903933 87904113 -13476408 + MIR3 SINE MIR 29 202 -6 1238 222 66 26 chr15 87904465 87904843 -13475678 + MLT1C LTR MaLR 9 401 -66 184 234 141 0 chr15 87905354 87905418 -13475103 + MIR SINE MIR 82 154 -108 483 138 128 37 chr15 87906132 87906241 -13474280 - MLT1C LTR MaLR -340 127 9 1918 121 61 4 chr15 87906713 87906993 -13473528 - AluSq SINE Alu -17 296 1 743 180 0 43 chr15 87907023 87907162 -13473359 + FLAM_C SINE Alu 1 133 0 269 339 96 0 chr15 87909496 87909611 -13470910 + MIR SINE MIR 20 145 -117 2191 93 3 3 chr15 87912148 87912437 -13468084 - AluSg SINE Alu -21 289 1 217 339 0 0 chr15 87912558 87912623 -13467898 + MIR SINE MIR 32 96 -166 779 128 0 17 chr15 87912623 87912740 -13467781 + FRAM SINE Alu 49 163 -13 1805 134 58 18 chr15 87913110 87913387 -13467134 - AluSx SINE Alu -24 288 1 1762 158 0 53 chr15 87913387 87913709 -13466812 - AluJo SINE Alu -7 305 1 180 197 239 0 chr15 87913903 87913974 -13466547 - MIR SINE MIR -65 197 110 1839 146 45 0 chr15 87914847 87915134 -13465387 + AluJb SINE Alu 3 302 -10 322 240 73 0 chr15 87915156 87915252 -13465269 + L1MC5 LINE L1 5868 5970 -1838 1388 207 38 72 chr15 87915403 87915900 -13464621 + L1MC5 LINE L1 7430 7909 -52 21 36 0 0 chr15 87916633 87916661 -13463860 + AT_rich Low_complexity Low_complexity 1 28 0 2216 122 0 3 chr15 87917939 87918242 -13462279 - AluSx SINE Alu -8 304 3 2138 105 0 3 chr15 87918286 87918600 -13461921 - AluSx SINE Alu 0 313 1 631 124 41 0 chr15 87918775 87918872 -13461649 + AluSp/q SINE Alu 176 276 -37 2219 100 33 3 chr15 87919554 87919854 -13460667 + AluSx SINE Alu 1 309 -3 298 203 40 27 chr15 87920237 87920311 -13460210 + L1MC4a LINE L1 5857 5931 -1877 37 76 0 0 chr15 87920514 87920593 -13459928 + AT_rich Low_complexity Low_complexity 1 79 0 1159 218 8 4 chr15 87922637 87922876 -13457645 - MIR SINE MIR -13 249 10 208 289 40 13 chr15 87922988 87923064 -13457457 + MIR3 SINE MIR 82 159 -49 231 278 92 64 chr15 87923730 87923903 -13456618 - L3 LINE CR1 -20 1557 1380 234 230 46 58 chr15 87923952 87924039 -13456482 - L3 LINE CR1 -195 1382 1297 486 282 198 10 chr15 87925288 87925490 -13455031 + MIR SINE MIR 20 259 -3 497 157 9 56 chr15 87926248 87926329 -13454192 + L1MA8 LINE L1 6163 6239 -52 1712 136 48 0 chr15 87926329 87926602 -13453919 + AluJo SINE Alu 6 291 -21 497 157 9 56 chr15 87926602 87926628 -13453893 + L1MA8 LINE L1 6239 6265 -26 247 68 91 0 chr15 87926634 87926678 -13453843 + L1MA8 LINE L1 6239 6286 -5 21 0 0 0 chr15 87926678 87926699 -13453822 + AT_rich Low_complexity Low_complexity 1 21 0 2055 112 20 0 chr15 87926699 87926995 -13453526 + AluSx SINE Alu 1 302 -10 757 276 29 34 chr15 87928042 87928281 -13452240 + MIR SINE MIR 15 252 -10 445 119 0 110 chr15 87928382 87928427 -13452094 - L1MC2 LINE L1 0 6344 6316 2046 119 3 0 chr15 87928427 87928720 -13451801 + AluSx SINE Alu 1 294 -18 445 119 0 110 chr15 87928720 87928783 -13451738 - L1MC2 LINE L1 -28 6316 6248 180 0 0 0 chr15 87928796 87928816 -13451705 + (T)n Simple_repeat Simple_repeat 1 20 0 407 170 19 94 chr15 87929355 87929461 -13451060 - MER94 DNA DNA -29 105 8 204 200 0 0 chr15 87929510 87929555 -13450966 + (CA)n Simple_repeat Simple_repeat 2 46 0 2070 100 0 35 chr15 87929871 87930182 -13450339 + AluSx SINE Alu 1 300 -12 412 222 8 8 chr15 87930719 87930836 -13449685 + MER113 DNA MER1_type? 8 124 -397 1190 132 112 0 chr15 87930859 87931056 -13449465 + MER20 DNA MER1_type 1 219 0 1706 146 54 0 chr15 87931147 87931441 -13449080 - AluSx SINE Alu -2 310 1 1455 132 4 71 chr15 87931562 87931707 -13448814 + L1MB3 LINE L1 5683 5801 -382 1866 123 3 63 chr15 87931707 87932024 -13448497 + AluJo SINE Alu 1 298 -14 1455 132 4 71 chr15 87932024 87932158 -13448363 + L1MB3 LINE L1 5801 5943 -240 1125 133 0 12 chr15 87932158 87932331 -13448190 + AluSg/x SINE Alu 130 300 -12 5590 221 11 14 chr15 87932340 87933467 -13447054 - L1M4b LINE L1 -5725 1134 11 376 123 0 0 chr15 87933469 87933526 -13446995 - MER4D LTR ERV1 0 872 816 746 165 19 169 chr15 87933626 87933993 -13446528 - MER4A LTR ERV1 -72 393 275 1965 134 19 7 chr15 87933993 87934300 -13446221 + AluSq SINE Alu 1 311 -2 746 165 19 169 chr15 87934300 87934422 -13446099 - MER4A LTR ERV1 -190 275 136 308 294 0 0 chr15 87934472 87934557 -13445964 + L1ME LINE L1 5667 5751 -419 666 127 25 17 chr15 87934559 87934677 -13445844 - MER4C LTR ERV1 -346 119 1 448 378 61 4 chr15 87934713 87934959 -13445562 - L2 LINE L2 -606 2708 2449 729 282 29 21 chr15 87935307 87935548 -13444973 - MIR SINE MIR -2 260 18 1835 210 73 27 chr15 87935549 87936030 -13444491 + L1ME3A LINE L1 5668 6170 0 632 225 161 54 chr15 87936128 87936254 -13444267 + L1MC5 LINE L1 7476 7587 -374 1751 145 4 4 chr15 87936254 87936553 -13443968 + AluJb SINE Alu 13 311 0 632 225 161 54 chr15 87936553 87936816 -13443705 + L1MC5 LINE L1 7587 7908 -53 219 332 54 62 chr15 87937316 87937705 -13442816 + L2 LINE L2 2682 3069 -203 505 229 38 66 chr15 87938490 87938637 -13441884 - MER5B DNA MER1_type 0 178 35 2028 101 3 7 chr15 87938637 87938934 -13441587 - AluSq SINE Alu -17 296 1 505 229 38 66 chr15 87938934 87938969 -13441552 - MER5B DNA MER1_type -143 35 1 476 208 182 6 chr15 87939059 87939218 -13441303 + MER5A DNA MER1_type 3 189 0 375 246 269 0 chr15 87939237 87939371 -13441150 + MER5A DNA MER1_type 14 183 -6 1926 87 11 8 chr15 87939450 87939715 -13440806 + AluSx SINE Alu 22 287 -25 774 125 39 0 chr15 87939918 87940046 -13440475 + MER53 DNA DNA 1 133 -56 26 50 0 0 chr15 87940080 87940120 -13440401 + AT_rich Low_complexity Low_complexity 1 40 0 394 152 0 0 chr15 87940132 87940198 -13440323 + MER53 DNA DNA 124 189 0 335 123 62 31 chr15 87940332 87940397 -13440124 - MLT1I LTR MaLR -4 405 339 444 233 0 0 chr15 87940419 87940539 -13439982 + C-rich Low_complexity Low_complexity 5 124 0 1963 137 0 0 chr15 87940539 87940832 -13439689 - AluSx SINE Alu -19 293 1 476 268 141 45 chr15 87940832 87940987 -13439534 - MLT1I LTR MaLR -71 338 154 449 196 36 36 chr15 87940987 87941099 -13439422 + MER81 DNA DNA 3 114 0 476 268 141 45 chr15 87941099 87941163 -13439358 - MLT1I LTR MaLR -255 154 98 2670 152 17 53 chr15 87941213 87941590 -13438931 + LTR32 LTR ERVL 15 373 -98 2262 91 0 3 chr15 87941590 87941888 -13438633 - AluSq SINE Alu -16 297 1 2670 152 17 53 chr15 87941888 87941984 -13438537 + LTR32 LTR ERVL 373 471 0 267 200 0 0 chr15 87942388 87942433 -13438088 + MER5A DNA MER1_type 57 101 -88 1267 253 73 26 chr15 87942683 87943023 -13437498 + MLT1I LTR MaLR 44 399 -10 2298 105 0 0 chr15 87943046 87943351 -13437170 + AluSx SINE Alu 1 305 -7 282 221 26 13 chr15 87943351 87943428 -13437093 + L1ME3A LINE L1 5874 5951 -219 1580 174 3 20 chr15 87943614 87943913 -13436608 + AluJo SINE Alu 17 310 -2 2012 91 0 11 chr15 87943995 87944271 -13436250 + AluSg SINE Alu 37 309 -1 1894 226 83 15 chr15 87944296 87944775 -13435746 + MLT1G LTR MaLR 77 588 -2 234 0 0 0 chr15 87944803 87944829 -13435692 + (TG)n Simple_repeat Simple_repeat 1 26 0 4186 89 13 49 chr15 87945335 87945963 -13434558 + LTR14B LTR ERVK 4 608 0 2262 149 71 25 chr15 87946447 87946883 -13433638 + MLT1C LTR MaLR 6 461 -6 376 274 61 46 chr15 87948045 87948242 -13432279 + L1ME3A LINE L1 5963 6162 -8 262 296 47 28 chr15 87948246 87948459 -13432062 + L1ME4a LINE L1 5691 5907 -214 2205 78 0 29 chr15 87948498 87948806 -13431715 + AluY SINE Alu 1 299 -12 315 220 0 80 chr15 87948910 87949010 -13431511 - AluJ SINE Alu -63 239 148 687 179 0 0 chr15 87949010 87949127 -13431394 - AluJ SINE Alu -184 118 2 257 222 231 40 chr15 87949127 87949352 -13431169 + L1ME4a LINE L1 5751 6018 -103 2074 135 3 0 chr15 87949362 87949673 -13430848 - AluSx SINE Alu 0 312 1 2013 119 0 7 chr15 87949736 87950031 -13430490 - AluSx SINE Alu -16 296 4 366 25 0 0 chr15 87950713 87950753 -13429768 - MLT1C LTR MaLR 0 467 428 2135 101 3 0 chr15 87950808 87951104 -13429417 + AluY SINE Alu 1 297 -14 1531 149 36 18 chr15 87951273 87951496 -13429025 - MLT1C LTR MaLR -45 422 192 381 70 0 0 chr15 87951496 87951553 -13428968 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 1531 149 36 18 chr15 87951553 87951605 -13428916 - MLT1C LTR MaLR -275 192 142 2657 74 40 6 chr15 87952206 87952556 -13427965 - THE1B LTR MaLR -2 362 1 217 152 0 0 chr15 87952772 87952805 -13427716 - L2 LINE L2 -19 3294 3262 2086 105 0 0 chr15 87952838 87953123 -13427398 - AluSq SINE Alu -28 285 1 236 304 0 14 chr15 87953123 87953192 -13427329 + L2 LINE L2 3186 3253 -19 43314 34 24 1 chr15 87954157 87960225 -13420296 + L1PA3 LINE L1 1 6209 0 243 146 0 0 chr15 87960295 87960336 -13420185 + (TCC)n Simple_repeat Simple_repeat 3 43 0 717 123 11 48 chr15 87960438 87960625 -13419896 + (TCC)n Simple_repeat Simple_repeat 1 180 0 255 204 0 0 chr15 87960626 87960680 -13419841 + CT-rich Low_complexity Low_complexity 3 56 0 848 185 0 0 chr15 87960688 87960834 -13419687 - FRAM SINE Alu -30 146 1 1823 141 0 64 chr15 87961146 87961473 -13419048 + AluSx SINE Alu 1 306 -6 414 0 0 0 chr15 87961480 87961526 -13418995 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 194 125 0 25 chr15 87961526 87961566 -13418955 + (GAAA)n Simple_repeat Simple_repeat 1 39 0 773 284 28 20 chr15 87961834 87962084 -13418437 + MIR SINE MIR 1 252 -10 218 333 0 0 chr15 87962509 87962572 -13417949 - MIR SINE MIR -163 99 37 819 252 145 29 chr15 87962771 87963194 -13417327 - MLT1G1 LTR MaLR -26 569 42 2223 100 0 0 chr15 87963538 87963838 -13416683 + AluSc SINE Alu 1 300 -9 478 205 131 25 chr15 87964157 87964279 -13416242 - L2 LINE L2 0 3272 3138 2188 109 0 0 chr15 87964318 87964620 -13415901 + AluSx SINE Alu 1 302 -10 195 254 28 42 chr15 87964670 87964741 -13415780 + L2 LINE L2 2906 2975 -338 192 267 189 11 chr15 87964871 87964961 -13415560 + L2 LINE L2 3122 3227 -86 1717 123 13 47 chr15 87965056 87965357 -13415164 + AluJb SINE Alu 1 291 -21 209 33 33 0 chr15 87966437 87966467 -13414054 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 2289 77 13 0 chr15 87966543 87966841 -13413680 - AluSx SINE Alu -10 302 1 432 175 50 0 chr15 87966916 87966996 -13413525 - HsTC2c DNA Tc2 -1 728 645 3135 186 19 50 chr15 87966996 87967958 -13412563 + L1MC/D LINE L1 4653 5567 -766 1782 171 6 16 chr15 87967958 87968273 -13412248 - AluJo SINE Alu 0 312 1 3135 186 19 50 chr15 87968273 87968498 -13412023 + L1MC/D LINE L1 5567 5798 -535 879 183 25 50 chr15 87968498 87968520 -13412001 - HsTC2c DNA Tc2 -1217 681 660 1253 111 26 0 chr15 87968520 87968710 -13411811 + L1MC1 LINE L1 6139 6333 0 879 183 25 50 chr15 87968710 87968889 -13411632 - HsTC2c DNA Tc2 -1238 660 485 376 238 157 81 chr15 87968915 87968989 -13411532 + MER5A DNA MER1_type 5 72 -117 2301 90 0 3 chr15 87968989 87969299 -13411222 + AluSg SINE Alu 1 309 -1 376 238 157 81 chr15 87969299 87969396 -13411125 + MER5A DNA MER1_type 72 189 0 1834 192 61 15 chr15 87969403 87969798 -13410723 - HsTC2c DNA Tc2 -316 413 1 2047 133 0 0 chr15 87969981 87970274 -13410247 + AluSq SINE Alu 9 301 -12 1803 145 37 0 chr15 87970286 87970582 -13409939 + AluJb SINE Alu 1 307 -5 204 269 0 0 chr15 87970769 87970821 -13409700 - L3 LINE CR1 -754 823 772 973 147 0 137 chr15 87970827 87970889 -13409632 - MER5A DNA MER1_type -3 186 117 2154 117 7 0 chr15 87970889 87971197 -13409324 + AluSx SINE Alu 2 311 -1 973 147 0 137 chr15 87971197 87971338 -13409183 - MER5A DNA MER1_type -72 117 11 638 321 159 19 chr15 87971352 87971673 -13408848 - L3 LINE CR1 -803 774 409 4541 121 193 30 chr15 87971894 87973215 -13407306 + pTR5 LTR ERV1 739 2438 0 439 309 38 89 chr15 87973219 87973588 -13406933 - MLT1I LTR MaLR -21 388 39 2061 91 6 72 chr15 87974110 87974428 -13406093 + AluSx SINE Alu 1 297 -15 239 331 6 11 chr15 87974511 87974692 -13405829 - L1 LINE L1 -1085 5061 4882 532 230 113 41 chr15 87974742 87975209 -13405312 - L1 LINE L1 -2862 3284 2778 1340 186 14 25 chr15 87975292 87975567 -13404954 + AluJo SINE Alu 1 272 -40 2405 121 13 24 chr15 87975600 87975979 -13404542 - THE1C LTR MaLR 0 375 1 2001 130 3 0 chr15 87976098 87976405 -13404116 + AluSx SINE Alu 1 308 -4 596 193 67 0 chr15 87976550 87976669 -13403852 - AluSg/x SINE Alu -3 309 183 909 74 0 0 chr15 87976770 87976892 -13403629 + AluSg/x SINE Alu 178 299 -13 1183 137 119 9 chr15 87976894 87977121 -13403400 + L1MB3 LINE L1 5771 6022 -161 499 129 0 0 chr15 87977121 87977191 -13403330 + MER1B DNA MER1_type 1 70 -267 582 100 22 22 chr15 87977218 87977308 -13403213 + MER1B DNA MER1_type 231 320 -19 932 163 11 16 chr15 87977308 87977492 -13403029 + L1MB4 LINE L1 5998 6180 0 274 103 0 35 chr15 87977527 87977585 -13402936 + (TG)n Simple_repeat Simple_repeat 1 56 0 406 259 24 35 chr15 87977618 87977788 -13402733 + L1ME4a LINE L1 5952 6119 -2 2123 123 0 0 chr15 87977844 87978144 -13402377 + AluSx SINE Alu 1 300 -12 1773 137 16 26 chr15 87978426 87978739 -13401782 + AluJb SINE Alu 3 312 0 1898 156 0 3 chr15 87979238 87979533 -13400988 + AluJb SINE Alu 1 294 -18 1942 133 11 61 chr15 87979553 87979670 -13400851 - L1PA16 LINE L1 -22 6144 6023 2217 94 3 10 chr15 87979670 87979978 -13400543 - AluSq SINE Alu -7 306 1 1942 133 11 61 chr15 87979978 87980220 -13400301 - L1PA16 LINE L1 -143 6023 5803 295 291 80 13 chr15 87980278 87980429 -13400092 + L1ME4a LINE L1 5961 6121 0 2152 118 0 0 chr15 87980722 87981027 -13399494 + AluSq SINE Alu 1 305 -8 1768 230 77 41 chr15 87982593 87983127 -13397394 + MER115 DNA AcHobo 140 692 -1 2337 75 3 3 chr15 87983897 87984203 -13396318 + AluSq SINE Alu 1 306 -7 427 291 26 0 chr15 87984276 87984393 -13396128 - MIR SINE MIR -83 179 60 1611 103 0 4 chr15 87984444 87984678 -13395843 - AluY SINE Alu -5 306 74 309 109 0 0 chr15 87986027 87986073 -13394448 + (GGAA)n Simple_repeat Simple_repeat 4 49 0 2223 89 0 0 chr15 87986447 87986739 -13393782 + AluY SINE Alu 1 292 -19 2328 233 35 24 chr15 87986809 87987358 -13393163 + MLT1E LTR MaLR 1 555 -38 1139 190 49 2 chr15 87987370 87987649 -13392872 - MER2 DNA MER2_type 0 345 7 452 245 106 13 chr15 87987664 87987815 -13392706 - L1MEd LINE L1 -4956 1163 999 1770 140 3 17 chr15 87987815 87988115 -13392406 - AluJb SINE Alu -16 296 1 685 264 43 21 chr15 87988163 87988398 -13392123 - L1MEd LINE L1 -5273 846 607 245 280 57 9 chr15 87988731 87988920 -13391601 - L1M4 LINE L1 -3890 2492 2296 22 56 0 0 chr15 87989140 87989176 -13391345 + AT_rich Low_complexity Low_complexity 1 36 0 1570 119 103 4 chr15 87989265 87989554 -13390967 - AluSx SINE Alu 0 315 1 2197 220 86 4 chr15 87989555 87990033 -13390488 - MLT1F1 LTR MaLR -50 517 1 2506 65 0 0 chr15 87990261 87990570 -13389951 + AluSq SINE Alu 1 309 -4 2099 117 0 0 chr15 87991323 87991623 -13388898 + AluSx SINE Alu 1 300 -12 224 396 4 35 chr15 87991894 87992154 -13388367 - L3 LINE CR1 -1139 438 105 1585 167 0 65 chr15 87992299 87992623 -13387898 + AluJb SINE Alu 1 303 -9 2117 116 7 0 chr15 87992651 87992961 -13387560 - AluSp SINE Alu -1 312 1 465 263 0 0 chr15 87993037 87993136 -13387385 + MIR3 SINE MIR 79 177 -31 2115 106 0 0 chr15 87993195 87993511 -13387010 + AluSq SINE Alu 1 316 0 318 266 53 71 chr15 87993961 87994130 -13386391 + MLT1K LTR MaLR 418 583 -5 1896 147 3 3 chr15 87994415 87994714 -13385807 + AluSx SINE Alu 1 299 -13 451 189 120 114 chr15 87995464 87995639 -13384882 + MER5B DNA MER1_type 1 176 -2 1947 153 37 16 chr15 87996107 87996486 -13384035 - L1MA8 LINE L1 -3 6288 5902 2057 113 3 32 chr15 87997088 87997398 -13383123 + AluSx SINE Alu 1 301 -11 2171 170 27 25 chr15 87997487 87998012 -13382509 - L1MB7 LINE L1 -31 6153 5115 * 6673 187 48 21 chr15 87997996 87999153 -13381368 - L1M4 LINE L1 -413 5771 4540 2087 116 3 0 chr15 87999153 87999445 -13381076 + AluSx SINE Alu 1 293 -19 6673 187 48 21 chr15 87999445 88000245 -13380276 - L1M4 LINE L1 -1644 4540 3764 2024 138 0 0 chr15 88000365 88000661 -13379860 - AluSx SINE Alu -16 296 1 4629 50 22 27 chr15 88000837 88001092 -13379429 - LTR10C LTR ERV1 0 591 336 2255 65 7 3 chr15 88001092 88001385 -13379136 - AluY SINE Alu -14 297 4 4629 50 22 27 chr15 88001385 88001723 -13378798 - LTR10C LTR ERV1 -255 336 1 1380 276 93 30 chr15 88001856 88002049 -13378472 + MLT1G1 LTR MaLR 4 183 -412 2230 108 0 0 chr15 88002049 88002356 -13378165 - AluSx SINE Alu -5 307 1 1380 276 93 30 chr15 88002356 88002719 -13377802 + MLT1G1 LTR MaLR 183 595 0 324 215 54 65 chr15 88002795 88002888 -13377633 - HAL1b LINE L1 -510 838 747 786 172 81 102 chr15 88002940 88003155 -13377366 + MER33 DNA MER1_type 1 203 -2382 1747 158 17 7 chr15 88003155 88003453 -13377068 + AluJb SINE Alu 1 301 -11 786 172 81 102 chr15 88003453 88003515 -13377006 + MER33 DNA MER1_type 203 265 -59 2716 206 49 7 chr15 88003515 88004102 -13376419 - MER50 LTR ERV1 0 734 123 834 188 30 12 chr15 88004120 88004285 -13376236 - MER50 LTR ERV1 -566 168 1 2016 109 0 0 chr15 88004320 88004594 -13375927 + AluSg SINE Alu 5 278 -32 287 0 0 50 chr15 88004594 88004634 -13375887 + (TAAAA)n Simple_repeat Simple_repeat 1 38 0 2003 135 10 0 chr15 88004692 88004996 -13375525 + AluSx SINE Alu 1 307 -5 1552 189 113 74 chr15 88005001 88005487 -13375034 + MLT1D LTR MaLR 1 505 0 2177 90 3 0 chr15 88005533 88005822 -13374699 + AluSx SINE Alu 1 290 -22 410 235 17 9 chr15 88005949 88006064 -13374457 + L1ME2 LINE L1 5968 6083 -81 475 183 9 9 chr15 88006066 88006181 -13374340 - Charlie5 DNA MER1_type -32 2580 2466 266 219 0 0 chr15 88006185 88006264 -13374257 + L1ME3 LINE L1 6086 6162 0 1601 176 21 0 chr15 88006266 88006555 -13373966 + AluJb SINE Alu 1 295 -17 1985 66 0 0 chr15 88006558 88006802 -13373719 + AluY SINE Alu 58 301 -10 23 0 0 0 chr15 88006802 88006825 -13373696 + AT_rich Low_complexity Low_complexity 1 23 0 191 111 0 28 chr15 88006825 88006861 -13373660 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 483 261 93 79 chr15 88007238 88007518 -13373003 - HAL1 LINE L1 -941 1566 1283 2093 91 0 21 chr15 88007537 88007822 -13372699 - AluSg SINE Alu -30 280 2 193 140 40 0 chr15 88007843 88007866 -13372655 + CT-rich Low_complexity Low_complexity 2 23 -30 2140 109 0 3 chr15 88007866 88008170 -13372351 - AluSq SINE Alu -10 303 1 193 140 40 0 chr15 88008170 88008196 -13372325 + CT-rich Low_complexity Low_complexity 23 53 0 264 125 56 28 chr15 88008795 88008867 -13371654 + GA-rich Low_complexity Low_complexity 3 76 0 306 222 202 0 chr15 88009287 88009386 -13371135 - MLT2C1 LTR ERVL -49 348 230 810 247 83 35 chr15 88009390 88009582 -13370939 - MLT1I LTR MaLR -39 370 156 2210 109 111 76 chr15 88009582 88009730 -13370791 + MER4C LTR ERV1 1 142 -323 2058 110 13 13 chr15 88009730 88010038 -13370483 + AluSc SINE Alu 1 308 -1 2210 109 111 76 chr15 88010038 88010338 -13370183 + MER4C LTR ERV1 142 465 0 810 247 83 35 chr15 88010338 88010457 -13370064 - MLT1I LTR MaLR -253 156 44 699 174 0 0 chr15 88011129 88011298 -13369223 + FLAM_A SINE Alu 1 169 0 1134 123 5 82 chr15 88011308 88011527 -13368994 + LTR62 LTR ERVK 1 202 -517 1532 115 0 0 chr15 88011527 88011735 -13368786 + AluSg SINE Alu 1 208 -102 1439 232 45 110 chr15 88011735 88012351 -13368170 - LTR9 LTR ERV1 -36 576 1 2207 126 62 40 chr15 88012351 88012428 -13368093 + LTR62 LTR ERVK 232 306 -413 2217 85 0 3 chr15 88012428 88012723 -13367798 - AluSg SINE Alu -16 294 1 2207 126 62 40 chr15 88012723 88013067 -13367454 + LTR62 LTR ERVK 306 662 -57 2571 120 95 19 chr15 88013067 88013216 -13367305 + MER4C LTR ERV1 1 137 -328 2261 92 7 0 chr15 88013216 88013519 -13367002 - AluSp SINE Alu -8 305 1 2571 120 95 19 chr15 88013519 88013713 -13366808 + MER4C LTR ERV1 137 386 -79 3235 161 72 45 chr15 88013713 88014421 -13366100 + LTR8A LTR ERV1 1 727 0 2571 120 95 19 chr15 88014421 88014508 -13366013 + MER4C LTR ERV1 386 465 0 426 148 0 0 chr15 88014508 88014569 -13365952 + LTR62 LTR ERVK 659 719 0 3546 123 36 29 chr15 88014607 88014731 -13365790 - MER39B LTR ERV1 -37 616 494 3397 103 28 92 chr15 88014731 88014764 -13365757 - MER4A LTR ERV1 -3 597 563 1511 121 9 0 chr15 88014764 88014988 -13365533 - AluSg/x SINE Alu -16 296 71 3397 103 28 92 chr15 88014988 88015592 -13364929 - MER4A LTR ERV1 -37 563 1 3546 123 36 29 chr15 88015592 88016079 -13364442 - MER39B LTR ERV1 -159 494 1 2789 134 39 14 chr15 88016083 88016596 -13363925 - MER4E LTR ERV1 0 766 73 1100 66 0 0 chr15 88016598 88016734 -13363787 - L1PA8 LINE L1 -501 5671 5536 3691 68 0 14 chr15 88016734 88017218 -13363303 + L1PA8 LINE L1 5689 6168 -4 2086 100 3 26 chr15 88017218 88017529 -13362992 + AluSc SINE Alu 1 304 -5 299 143 0 187 chr15 88017529 88017620 -13362901 - MER4D LTR ERV1 -798 74 1 1617 152 58 0 chr15 88018058 88018335 -13362186 - AluJb SINE Alu -19 293 1 2140 78 7 3 chr15 88018437 88018720 -13361801 + AluSg SINE Alu 1 284 -26 600 222 134 41 chr15 88018774 88018968 -13361553 - MIR SINE MIR -6 256 45 680 70 23 20 chr15 88019165 88019279 -13361242 - LTR12 LTR ERV1 0 714 368 283 189 0 0 chr15 88019279 88019332 -13361189 - LTR30 LTR ERV1 -118 604 552 437 103 0 29 chr15 88019363 88019431 -13361090 - LTR12 LTR ERV1 -440 274 209 250 269 0 0 chr15 88019451 88019503 -13361018 - LTR30 LTR ERV1 -670 52 1 1459 152 34 30 chr15 88019569 88019865 -13360656 - AluJo SINE Alu -15 297 1 1733 183 0 0 chr15 88019877 88020167 -13360354 - AluJb SINE Alu -22 290 1 2128 118 121 11 chr15 88020190 88020563 -13359958 + MER84 LTR ERVI 1 414 -93 1295 106 0 0 chr15 88020563 88020743 -13359778 - AluSp SINE Alu -3 310 131 712 110 30 0 chr15 88020743 88020843 -13359678 + MER84 LTR ERVI 405 507 0 928 168 59 165 chr15 88020905 88021263 -13359258 + LTR34 LTR ERV1 1 320 -379 589 226 86 27 chr15 88021254 88021440 -13359081 + LTR34 LTR ERV1 497 693 -6 * 342 269 116 60 chr15 88021471 88021533 -13358988 - MER34 LTR ERV1 -41 501 444 1770 156 23 0 chr15 88021533 88021834 -13358687 - AluJo SINE Alu -4 308 1 342 269 116 60 chr15 88021834 88021987 -13358534 - MER34 LTR ERV1 -98 444 274 * 1306 166 55 28 chr15 88021967 88022220 -13358301 + MER61A LTR ERV1 56 315 -28 321 175 18 0 chr15 88022249 88022306 -13358215 + LTR8A LTR ERV1 256 313 -414 806 143 0 53 chr15 88022307 88022440 -13358081 + FLAM_C SINE Alu 2 127 -6 1982 125 30 0 chr15 88022460 88022763 -13357758 + AluSx SINE Alu 1 312 0 1744 142 60 3 chr15 88022767 88023069 -13357452 + LTR8A LTR ERV1 298 616 -111 686 203 0 16 chr15 88024687 88024815 -13355706 + LTR8 LTR ERV1 566 691 0 441 238 0 49 chr15 88024815 88024933 -13355588 - MER34 LTR ERV1 -428 114 3 237 272 139 44 chr15 88025587 88025766 -13354755 - MIR3 SINE MIR -68 194 4 203 0 0 36 chr15 88026538 88026566 -13353955 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 970 145 26 0 chr15 88026721 88026873 -13353648 - AluJo SINE Alu -10 292 137 721 108 0 20 chr15 88026873 88026975 -13353546 + PABL_A LTR ERV1 11 110 -550 2968 203 39 11 chr15 88026981 88027602 -13352919 + LTR9B LTR ERV1 7 644 0 * 4406 69 9 11 chr15 88027602 88028156 -13352365 + PABL_A LTR ERV1 108 660 0 638 188 7 43 chr15 88028174 88028312 -13352209 - AluJo SINE Alu -169 133 1 2798 152 30 41 chr15 88028319 88028555 -13351966 - L1MB5 LINE L1 -36 6138 5901 1945 132 3 3 chr15 88028555 88028859 -13351662 + AluSc SINE Alu 1 304 -5 2798 152 30 41 chr15 88028859 88029181 -13351340 - L1MB5 LINE L1 -273 5901 5586 211 271 0 0 chr15 88029385 88029433 -13351088 - MIR SINE MIR -1 261 214 1771 173 0 0 chr15 88029504 88029818 -13350703 - AluJo SINE Alu 0 312 1 481 215 123 23 chr15 88029994 88030124 -13350397 + MIR SINE MIR 63 205 -57 990 232 134 35 chr15 88030124 88030543 -13349978 + MLT1D LTR MaLR 26 467 0 2326 91 3 0 chr15 88031087 88031394 -13349127 - AluSp SINE Alu -5 308 1 1760 162 0 0 chr15 88031958 88032236 -13348285 - AluJo SINE Alu -30 282 5 217 304 14 0 chr15 88032240 88032309 -13348212 - MIR SINE MIR -37 225 156 2909 131 12 74 chr15 88032312 88032597 -13347924 - MER7C DNA MER2_type -2429 599 365 1391 162 129 19 chr15 88032597 88032868 -13347653 + AluJo SINE Alu 1 301 -1 2909 131 12 74 chr15 88032868 88033148 -13347373 - MER7C DNA MER2_type -2663 365 69 1971 91 34 40 chr15 88033148 88033316 -13347205 - AluSp SINE Alu -18 295 128 2008 204 68 25 chr15 88033316 88033800 -13346721 + LTR22 LTR ERVK 1 505 -4 1971 91 34 40 chr15 88033800 88033928 -13346593 - AluSp SINE Alu -185 128 1 455 178 14 0 chr15 88033928 88034001 -13346520 - MER7C DNA MER2_type -525 77 4 1650 148 3 31 chr15 88034003 88034330 -13346191 - AluJb SINE Alu 0 319 1 482 191 127 96 chr15 88034359 88034400 -13346121 - MER69A DNA AcHobo -2350 176 138 1823 139 10 10 chr15 88034400 88034694 -13345827 + AluJo SINE Alu 1 294 -18 482 191 127 96 chr15 88034694 88034809 -13345712 - MER69A DNA AcHobo -2388 138 15 262 282 36 45 chr15 88034809 88034919 -13345602 - MIR SINE MIR -62 146 38 739 189 46 41 chr15 88034953 88035149 -13345372 - MIR SINE MIR -3 259 63 1671 179 0 19 chr15 88035385 88035703 -13344818 + AluJb SINE Alu 1 312 0 2047 106 3 0 chr15 88035710 88036034 -13344487 + AluSp SINE Alu 1 325 0 261 167 111 130 chr15 88036157 88036265 -13344256 + L1ME LINE L1 5707 5812 -350 1221 219 134 81 chr15 88036360 88036867 -13343654 - MLT1F1 LTR MaLR -8 559 1 3646 162 30 2 chr15 88037005 88037504 -13343017 + L1MA5 LINE L1 4808 5291 -1009 1666 148 32 7 chr15 88037504 88037788 -13342733 + AluJb SINE Alu 1 291 -21 3646 162 30 2 chr15 88037788 88038317 -13342204 + L1MA5 LINE L1 5291 5868 -432 277 217 116 0 chr15 88038318 88038387 -13342134 - LTR47A LTR ERVL -115 337 261 216 0 0 0 chr15 88038401 88038425 -13342096 + (TA)n Simple_repeat Simple_repeat 2 25 0 230 0 33 0 chr15 88038426 88038456 -13342065 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1607 155 33 11 chr15 88038458 88038729 -13341792 - AluJb SINE Alu -35 277 1 666 133 0 160 chr15 88039005 88039125 -13341396 + L1MA5 LINE L1 6005 6088 -212 2133 117 0 3 chr15 88039125 88039433 -13341088 - AluSc SINE Alu -2 307 1 666 133 0 160 chr15 88039433 88039493 -13341028 + L1MA5 LINE L1 6088 6156 -144 1904 133 30 44 chr15 88039494 88039566 -13340955 - MSTA LTR MaLR 0 428 356 2035 91 29 19 chr15 88039566 88039873 -13340648 - AluSg SINE Alu 0 310 1 1904 133 30 44 chr15 88039873 88040139 -13340382 - MSTA LTR MaLR -72 356 95 3240 114 10 37 chr15 88040140 88040681 -13339840 + MER51C LTR ERV1 1 506 -134 1787 144 3 41 chr15 88040681 88041000 -13339521 - AluSx SINE Alu -5 307 1 2117 141 24 21 chr15 88041000 88041340 -13339181 + THE1B LTR MaLR 24 364 0 467 90 0 0 chr15 88041346 88041413 -13339108 - Alu SINE Alu -8 303 237 1092 163 44 44 chr15 88041413 88041664 -13338857 + pTR5 LTR ERV1 743 993 -1445 3977 179 6 9 chr15 88041676 88042803 -13337718 + L1MA5A LINE L1 2173 3300 -3548 264 70 49 90 chr15 88042803 88042832 -13337689 - MSTA LTR MaLR -295 69 40 1724 159 40 7 chr15 88042832 88043134 -13337387 + AluSx SINE Alu 1 312 0 264 70 49 90 chr15 88043134 88043172 -13337349 - MSTA LTR MaLR -324 40 1 447 63 0 0 chr15 88043558 88043621 -13336900 + (CA)n Simple_repeat Simple_repeat 2 64 0 1796 169 0 6 chr15 88043635 88043948 -13336573 + AluSx SINE Alu 1 311 -1 3248 142 45 8 chr15 88043948 88044483 -13336038 + L1PA15 LINE L1 5611 6165 0 2233 93 0 3 chr15 88044488 88044788 -13335733 + AluY SINE Alu 1 299 -12 10553 144 29 66 chr15 88044795 88044848 -13335673 + L1MA5A LINE L1 3604 3657 -3342 1895 128 0 0 chr15 88044848 88045176 -13335345 + AluSx SINE Alu 1 328 0 10553 144 29 66 chr15 88045176 88045391 -13335130 + L1MA5A LINE L1 3657 3878 -3121 2122 112 3 3 chr15 88045391 88045694 -13334827 + AluSq SINE Alu 1 303 -10 10553 144 29 66 chr15 88045694 88046301 -13334220 + L1MA5A LINE L1 3878 4506 -2493 2161 121 3 0 chr15 88046301 88046608 -13333913 + AluSp SINE Alu 1 308 -5 10553 144 29 66 chr15 88046608 88047071 -13333450 + L1MA5A LINE L1 4506 4984 -2015 2123 105 10 0 chr15 88047071 88047375 -13333146 + AluSc SINE Alu 1 307 -2 10553 144 29 66 chr15 88047375 88047814 -13332707 + L1MA5A LINE L1 4984 5438 -1561 1860 156 130 21 chr15 88047814 88048198 -13332323 - MSTA LTR MaLR -2 426 1 10553 144 29 66 chr15 88048198 88048410 -13332111 + L1MA5A LINE L1 5438 5656 -1343 607 126 0 11 chr15 88048410 88048505 -13332016 + Alu SINE Alu 215 308 -2 10553 144 29 66 chr15 88048505 88049038 -13331483 + L1MA5A LINE L1 5656 6207 -792 2055 97 10 10 chr15 88049038 88049319 -13331202 + AluSp SINE Alu 1 281 -32 221 0 35 0 chr15 88049319 88049348 -13331173 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 225 0 0 0 chr15 88049348 88049373 -13331148 + (TA)n Simple_repeat Simple_repeat 2 26 0 10553 144 29 66 chr15 88049380 88049609 -13330912 + L1MA5A LINE L1 6207 6443 -556 1678 181 3 0 chr15 88049609 88049902 -13330619 + AluSx SINE Alu 1 294 -18 10553 144 29 66 chr15 88049902 88050581 -13329940 + L1MA5A LINE L1 6443 6996 -3 1172 121 103 45 chr15 88050582 88050805 -13329716 - Ricksha DNA DNA -771 2475 2240 207 100 0 0 chr15 88050805 88050835 -13329686 + (T)n Simple_repeat Simple_repeat 1 30 0 7324 132 7 48 chr15 88052239 88052357 -13328164 - Ricksha DNA DNA -993 2253 2132 1703 163 37 0 chr15 88052357 88052537 -13327984 - AluSx SINE Alu -7 305 108 315 0 0 0 chr15 88052537 88052572 -13327949 + (TG)n Simple_repeat Simple_repeat 1 35 0 1703 163 37 0 chr15 88052572 88052685 -13327836 - AluSx SINE Alu -204 108 1 7324 132 7 48 chr15 88052685 88053312 -13327209 - Ricksha DNA DNA -1114 2132 1480 2230 94 3 22 chr15 88053312 88053631 -13326890 + AluSp SINE Alu 1 313 0 7324 132 7 48 chr15 88053631 88053750 -13326771 - Ricksha DNA DNA -1766 1480 1358 1761 180 3 3 chr15 88053750 88054061 -13326460 + AluJo SINE Alu 1 311 -1 7324 132 7 48 chr15 88054061 88054434 -13326087 - Ricksha DNA DNA -1888 1358 1066 760 210 127 10 chr15 88054432 88054637 -13325884 - Ricksha DNA DNA -2885 361 133 * 257 263 126 11 chr15 88055114 88055209 -13325312 + MIR SINE MIR 33 138 -70 2121 127 137 13 chr15 88055280 88055659 -13324862 - MSTA LTR MaLR 0 428 3 23 0 0 0 chr15 88055804 88055827 -13324694 + AT_rich Low_complexity Low_complexity 1 23 0 764 155 0 16 chr15 88055836 88055965 -13324556 + FLAM_C SINE Alu 16 142 -1 1974 128 0 35 chr15 88056014 88056326 -13324195 + AluSq SINE Alu 1 301 -12 26 0 0 0 chr15 88056326 88056352 -13324169 + AT_rich Low_complexity Low_complexity 1 26 0 298 248 67 76 chr15 88056358 88056568 -13323953 - L1MC4a LINE L1 -1741 6067 5860 2215 86 10 3 chr15 88058093 88058395 -13322126 + AluSx SINE Alu 1 304 -8 1799 151 7 3 chr15 88058696 88059001 -13321520 + AluJb SINE Alu 1 306 -6 1988 172 59 61 chr15 88059515 88059648 -13320873 + LTR2B LTR ERV1 32 164 -326 2313 93 3 3 chr15 88059648 88059961 -13320560 + AluSp SINE Alu 1 313 0 1988 172 59 61 chr15 88059961 88060287 -13320234 + LTR2B LTR ERV1 164 490 0 3889 103 18 4 chr15 88060431 88060977 -13319544 - MER41A LTR ERV1 0 554 1 3440 150 39 31 chr15 88061202 88061591 -13318930 - MER39B LTR ERV1 0 653 256 1497 199 7 3 chr15 88061591 88061892 -13318629 - AluJb SINE Alu -10 302 1 3440 150 39 31 chr15 88061892 88062147 -13318374 - MER39B LTR ERV1 -397 256 4 2034 100 33 7 chr15 88062930 88063231 -13317290 + AluSc SINE Alu 1 309 0 474 241 101 46 chr15 88063632 88063907 -13316614 + LTR48 LTR ERV1 1 365 -411 557 198 6 142 chr15 88063990 88064073 -13316448 + Tigger3(Golem) DNA MER2_type 1 53 -2976 1659 139 14 17 chr15 88064073 88064360 -13316161 - AluJb SINE Alu -11 301 16 557 198 6 142 chr15 88064360 88064438 -13316083 + Tigger3(Golem) DNA MER2_type 53 140 -2889 * 1537 142 13 0 chr15 88064436 88064675 -13315846 + Tigger3(Golem) DNA MER2_type 2785 3026 -3 367 205 27 45 chr15 88064694 88064732 -13315789 + LTR48B LTR ERV1 487 524 -120 3127 139 41 82 chr15 88064732 88064986 -13315535 + MER39B LTR ERV1 1 264 -389 2250 98 0 3 chr15 88064986 88065291 -13315230 - AluSg SINE Alu -6 304 1 3127 139 41 82 chr15 88065291 88065314 -13315207 + MER39B LTR ERV1 264 286 -367 1479 112 0 5 chr15 88065314 88065520 -13315001 - AluSp SINE Alu -107 206 2 3127 139 41 82 chr15 88065520 88065922 -13314599 + MER39B LTR ERV1 286 653 0 367 205 27 45 chr15 88065922 88065995 -13314526 + LTR48B LTR ERV1 524 596 -48 256 135 0 0 chr15 88066243 88066280 -13314241 - MIR SINE MIR -10 252 216 554 145 6 2 chr15 88066408 88066598 -13313923 - MER2 DNA MER2_type 0 345 125 250 183 50 50 chr15 88066600 88066660 -13313861 + AluJ/FLAM SINE Alu 3 62 -240 * 252 143 54 54 chr15 88066657 88066713 -13313808 + AluJ/FLAM SINE Alu 28 83 -219 1634 174 3 14 chr15 88066721 88067008 -13313513 + AluJb SINE Alu 28 311 -1 3231 153 88 66 chr15 88067033 88067264 -13313257 - MER4-int LTR ERV1 -4215 2383 2159 2167 123 0 0 chr15 88067264 88067566 -13312955 - AluSp SINE Alu -11 302 1 3231 153 88 66 chr15 88067566 88067755 -13312766 - MER4-int LTR ERV1 -4439 2159 1976 2322 97 0 3 chr15 88067755 88068063 -13312458 - AluSp SINE Alu -6 307 1 3231 153 88 66 chr15 88068063 88068636 -13311885 - MER4-int LTR ERV1 -4622 1976 970 439 69 0 0 chr15 88068641 88068699 -13311822 + AluSp/q SINE Alu 189 246 -67 216 299 45 57 chr15 88068709 88068866 -13311655 + MIR SINE MIR 47 201 -61 219 339 71 44 chr15 88068972 88069155 -13311366 - L2 LINE L2 -277 2995 2808 7635 22 7 314 chr15 88069211 88071214 -13309307 + SVA Other Other 1 1386 0 1251 119 8 131 chr15 88071337 88071605 -13308916 + MER4B LTR ERV1 1 235 -375 1431 108 10 5 chr15 88071605 88071808 -13308713 + MER4B LTR ERV1 407 610 0 1269 170 41 65 chr15 88071810 88072354 -13308167 - MER4D-int LTR ERV1 -3661 2285 864 305 173 0 19 chr15 88072354 88072406 -13308115 - LTR49 LTR ERV1 -282 313 263 390 220 0 0 chr15 88072426 88072526 -13307995 + CT-rich Low_complexity Low_complexity 1 100 0 343 120 0 0 chr15 88072590 88072640 -13307881 - MER4D-int LTR ERV1 -5912 686 637 2344 127 13 46 chr15 88072641 88073036 -13307485 + MER48 LTR ERV1 6 387 0 1478 146 102 66 chr15 88073036 88073210 -13307311 - MER4D-int LTR ERV1 -5975 623 457 2280 63 0 13 chr15 88073210 88073510 -13307011 + AluY SINE Alu 1 296 -15 1478 146 102 66 chr15 88073510 88073746 -13306775 - MER4D-int LTR ERV1 -6141 457 198 1934 110 4 0 chr15 88074029 88074301 -13306220 - AluSg SINE Alu -37 273 1 860 180 143 11 chr15 88074301 88074490 -13306031 - MER4D-int LTR ERV1 -6384 214 1 334 49 0 0 chr15 88074493 88074534 -13305987 - MER4D LTR ERV1 0 872 832 527 108 0 0 chr15 88074535 88074609 -13305912 + MER4C LTR ERV1 392 465 0 1623 111 0 0 chr15 88074753 88074979 -13305542 - AluSc SINE Alu -83 226 1 345 248 107 44 chr15 88075831 88076037 -13304484 - MER34C LTR ERV1 -5 580 362 1731 162 28 0 chr15 88076229 88076513 -13304008 - AluJb SINE Alu -18 294 3 198 0 0 0 chr15 88076751 88076773 -13303748 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 5668 146 22 36 chr15 88076838 88077924 -13302597 + MER11C LTR ERVK 1 1071 0 2319 108 16 0 chr15 88078341 88078646 -13301875 + AluSx SINE Alu 1 310 -2 201 328 168 0 chr15 88079888 88080019 -13300502 - L3 LINE CR1 -111 1466 1314 2059 130 0 11 chr15 88080066 88080379 -13300142 - AluSx SINE Alu 0 310 1 838 301 57 9 chr15 88080480 88080815 -13299706 + L2 LINE L2 2400 2750 -564 1070 228 40 30 chr15 88080831 88081134 -13299387 - L1ME3A LINE L1 -5 6165 5860 189 0 0 0 chr15 88081179 88081200 -13299321 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 579 224 75 0 chr15 88081218 88081352 -13299169 + L1ME LINE L1 5556 5699 -471 545 221 47 16 chr15 88081368 88081495 -13299026 - MIR SINE MIR -86 176 46 1648 121 178 8 chr15 88081610 88081874 -13298647 - AluSg1 SINE Alu 0 309 1 5227 69 12 0 chr15 88081943 88082625 -13297896 - LTR8 LTR ERV1 0 691 2 22893 61 9 18 chr15 88082626 88083926 -13296595 - HUERS-P1 LTR ERV1 0 6263 4953 2285 113 0 3 chr15 88083926 88084235 -13296286 + AluSg1 SINE Alu 1 308 -1 22893 61 9 18 chr15 88084235 88085649 -13294872 - HUERS-P1 LTR ERV1 -1310 4953 3578 2233 126 3 0 chr15 88085649 88085951 -13294570 - AluSp SINE Alu -6 307 5 22893 61 9 18 chr15 88085951 88086423 -13294098 - HUERS-P1 LTR ERV1 -2685 3578 3103 1507 122 131 29 chr15 88086423 88086576 -13293945 - AluSg SINE Alu -18 292 103 3502 93 24 8 chr15 88086576 88087079 -13293442 - MER9 LTR ERVK 0 511 1 1507 122 131 29 chr15 88087079 88087170 -13293351 - AluSg SINE Alu -207 103 23 19145 78 43 47 chr15 88087170 88087584 -13292937 - HUERS-P1 LTR ERV1 -3146 3117 2703 2167 96 46 0 chr15 88087584 88087864 -13292657 - AluSq SINE Alu -20 293 1 19145 78 43 47 chr15 88087864 88088248 -13292273 - HUERS-P1 LTR ERV1 -3560 2703 2319 226 0 29 29 chr15 88088248 88088283 -13292238 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 19145 78 43 47 chr15 88088283 88089176 -13291345 - HUERS-P1 LTR ERV1 -3944 2319 1424 2275 119 0 6 chr15 88089176 88089487 -13291034 - AluSg SINE Alu -1 309 1 19145 78 43 47 chr15 88089487 88090795 -13289726 - HUERS-P1 LTR ERV1 -4839 1424 128 4485 58 13 35 chr15 88090795 88090891 -13289630 - LTR8 LTR ERV1 -73 618 521 2157 105 0 48 chr15 88090891 88091205 -13289316 - AluSc SINE Alu -8 301 3 4485 58 13 35 chr15 88091205 88091740 -13288781 - LTR8 LTR ERV1 -170 521 1 1776 179 27 13 chr15 88091982 88092283 -13288238 - AluJb SINE Alu -7 305 1 2317 110 13 3 chr15 88092385 88092694 -13287827 + AluSx SINE Alu 1 312 0 695 233 25 0 chr15 88092910 88093073 -13287448 - MER5B DNA MER1_type 0 178 12 1322 172 22 41 chr15 88093312 88093369 -13287152 - L1MB7 LINE L1 -16 6168 6111 2293 109 0 0 chr15 88093369 88093663 -13286858 + AluSx SINE Alu 1 294 -18 1322 172 22 41 chr15 88093663 88093919 -13286602 - L1MB7 LINE L1 -73 6111 5861 349 149 0 26 chr15 88093941 88094013 -13286508 - Alu SINE Alu -262 46 2 3442 184 16 62 chr15 88094394 88094514 -13286007 - L1M4 LINE L1 -1382 4764 4640 2514 77 0 0 chr15 88094514 88094814 -13285707 - AluY SINE Alu -11 300 1 3442 184 16 62 chr15 88094814 88095027 -13285494 - L1M4 LINE L1 -1506 4640 4419 2419 99 0 0 chr15 88095027 88095331 -13285190 - AluSx SINE Alu -8 304 1 3442 184 16 62 chr15 88095331 88095517 -13285004 - L1M4 LINE L1 -1727 4419 4226 252 59 0 0 chr15 88095517 88095551 -13284970 + (TG)n Simple_repeat Simple_repeat 1 34 0 3442 184 16 62 chr15 88095551 88095563 -13284958 - L1M4 LINE L1 -1920 4226 4215 2508 73 13 0 chr15 88095563 88095864 -13284657 - AluSp SINE Alu -8 305 1 3442 184 16 62 chr15 88095864 88096105 -13284416 - L1M4 LINE L1 -1931 4215 3964 1181 105 0 6 chr15 88096105 88096286 -13284235 + (TA)n Simple_repeat Simple_repeat 1 180 0 2061 146 0 0 chr15 88096291 88096585 -13283936 - AluSx SINE Alu -14 298 5 3442 184 16 62 chr15 88096585 88096731 -13283790 - L1M4 LINE L1 -2186 3960 3879 2458 74 0 14 chr15 88096746 88097043 -13283478 - AluY SINE Alu -16 295 3 1784 147 34 17 chr15 88097189 88097481 -13283040 - AluJb SINE Alu -15 297 1 2227 89 4 0 chr15 88097487 88097811 -13282710 - AluSx SINE Alu 0 325 1 468 262 8 0 chr15 88097937 88098059 -13282462 + MER58B DNA MER1_type 202 324 -17 906 300 47 6 chr15 88098073 88098416 -13282105 - L1MB7 LINE L1 -2071 5737 5381 2428 87 0 16 chr15 88100322 88100634 -13279887 - AluY SINE Alu -4 307 1 24 0 0 0 chr15 88101152 88101176 -13279345 + AT_rich Low_complexity Low_complexity 1 24 0 220 353 66 8 chr15 88101332 88101454 -13279067 + L2 LINE L2 2933 3061 -211 611 209 60 66 chr15 88105743 88105925 -13274596 + MER91B DNA MER1_type 10 190 0 560 217 26 0 chr15 88106638 88106753 -13273768 + L2 LINE L2 3196 3313 0 222 325 53 26 chr15 88106759 88106873 -13273648 - MIR SINE MIR -75 133 17 212 255 0 0 chr15 88107688 88107735 -13272786 + (TG)n Simple_repeat Simple_repeat 1 47 0 327 298 152 54 chr15 88107883 88108232 -13272289 - L2 LINE L2 -94 3219 2837 295 194 32 108 chr15 88108238 88108285 -13272236 + MER5A DNA MER1_type 26 64 -125 2241 82 0 20 chr15 88108285 88108606 -13271915 + AluSx SINE Alu 1 312 0 295 194 32 108 chr15 88108606 88108651 -13271870 + MER5A DNA MER1_type 64 111 -78 274 196 18 0 chr15 88108704 88108760 -13271761 - MIR SINE MIR -63 145 89 189 239 119 0 chr15 88109590 88109657 -13270864 + L2 LINE L2 3136 3210 -62 214 218 115 23 chr15 88109732 88109819 -13270702 + MIR SINE MIR 82 176 -86 206 366 11 0 chr15 88109960 88110053 -13270468 - L2 LINE L2 -189 3083 2990 771 176 0 0 chr15 88110726 88111118 -13269403 + (TG)n Simple_repeat Simple_repeat 1 392 0 2287 105 0 13 chr15 88111814 88112119 -13268402 - AluSx SINE Alu -11 301 1 194 194 0 0 chr15 88112119 88112155 -13268366 - MIR SINE MIR -113 149 114 2413 98 0 0 chr15 88113497 88113794 -13266727 - AluSc SINE Alu -12 297 1 228 67 0 0 chr15 88115339 88115369 -13265152 + (CA)n Simple_repeat Simple_repeat 2 31 0 2358 94 3 13 chr15 88115824 88116131 -13264390 - AluSq SINE Alu -9 304 1 273 246 50 80 chr15 88117763 88117922 -13262599 + MIR SINE MIR 20 170 -59 543 270 4 119 chr15 88118021 88118131 -13262390 - MIR SINE MIR -25 237 171 2333 111 0 0 chr15 88118131 88118429 -13262092 - AluSq SINE Alu -15 298 1 543 270 4 119 chr15 88118429 88118570 -13261951 - MIR SINE MIR -91 171 15 406 208 116 28 chr15 88118574 88118645 -13261876 - MIR SINE MIR -12 250 187 2041 128 3 10 chr15 88118645 88118941 -13261580 - AluSx SINE Alu -18 294 1 406 208 116 28 chr15 88118941 88119051 -13261470 - MIR SINE MIR -75 187 45 364 279 0 10 chr15 88119387 88119487 -13261034 - MIR SINE MIR -77 131 32 2271 121 3 0 chr15 88119592 88119899 -13260622 - AluSx SINE Alu -4 308 1 718 236 31 0 chr15 88120313 88120474 -13260047 + MIR SINE MIR 27 192 -70 2139 134 0 3 chr15 88120479 88120785 -13259736 + AluSx SINE Alu 3 307 -5 2331 98 3 10 chr15 88120895 88121201 -13259320 + AluSx SINE Alu 1 304 -8 493 249 61 40 chr15 88121204 88121555 -13258966 - MLT1J1 LTR MaLR -53 458 26 273 345 0 24 chr15 88121600 88121684 -13258837 - MIR SINE MIR -101 107 26 648 129 0 30 chr15 88122000 88122132 -13258389 + (TTCC)n Simple_repeat Simple_repeat 4 131 0 244 342 9 9 chr15 88122308 88122419 -13258102 + L2 LINE L2 2645 2755 -559 2224 125 0 0 chr15 88122439 88122736 -13257785 + AluSx SINE Alu 1 297 -15 304 307 66 0 chr15 88122814 88122951 -13257570 - LTR33 LTR ERVL -5 516 371 363 230 39 20 chr15 88122977 88123097 -13257424 - LTR33 LTR ERVL -311 210 68 369 185 15 123 chr15 88123453 88123583 -13256938 - MER96B DNA MER1_type? -6 411 296 649 109 0 0 chr15 88123684 88123776 -13256745 + AluY SINE Alu 1 92 -219 233 148 0 49 chr15 88123908 88123969 -13256552 + MER112 DNA MER1_type 133 190 -70 2476 100 3 0 chr15 88123978 88124289 -13256232 - AluSp SINE Alu -1 312 1 308 330 101 17 chr15 88124329 88124508 -13256013 + L2 LINE L2 3085 3278 -35 2410 100 0 0 chr15 88125128 88125428 -13255093 - AluSx SINE Alu -12 300 1 244 211 0 39 chr15 88125429 88125481 -13255040 + MIR SINE MIR 50 99 -163 231 354 52 0 chr15 88125491 88125587 -13254934 - MIR SINE MIR -6 256 156 2326 100 3 3 chr15 88125603 88125903 -13254618 - AluSq SINE Alu -13 300 1 355 235 78 9 chr15 88125969 88126084 -13254437 - MIR SINE MIR -80 182 60 1467 113 18 35 chr15 88126084 88126216 -13254305 + AluSx SINE Alu 1 129 -183 2295 106 3 13 chr15 88126216 88126528 -13253993 + AluSc SINE Alu 1 309 0 1467 113 18 35 chr15 88126528 88126624 -13253897 + AluSx SINE Alu 129 225 -87 1293 123 6 0 chr15 88126725 88126904 -13253617 + AluSg/x SINE Alu 121 300 -12 1332 205 138 42 chr15 88127096 88127554 -13252967 - MLT1D LTR MaLR -3 502 1 199 0 0 0 chr15 88127594 88127616 -13252905 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2417 60 0 0 chr15 88127616 88127897 -13252624 - AluY SINE Alu -30 281 1 373 277 88 48 chr15 88128022 88128088 -13252433 - L1ME4a LINE L1 -82 6039 5977 2001 142 24 7 chr15 88128088 88128384 -13252137 - AluSx SINE Alu -11 301 1 373 277 88 48 chr15 88128384 88128566 -13251955 - L1ME4a LINE L1 -144 5977 5781 486 283 185 0 chr15 88128661 88128862 -13251659 - MIR SINE MIR -11 251 17 525 176 111 0 chr15 88128914 88129022 -13251499 - MER5A DNA MER1_type -62 127 8 1720 184 3 7 chr15 88129154 88129458 -13251063 - AluJo SINE Alu -9 303 1 2064 207 66 31 chr15 88129839 88130356 -13250165 - MLT1H LTR MaLR -3 546 12 908 237 5 0 chr15 88130902 88131092 -13249429 - MIR SINE MIR -52 210 20 549 250 53 125 chr15 88131186 88131416 -13249105 - MER102b DNA MER1_type -1122 306 104 188 33 0 33 chr15 88131416 88131446 -13249075 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 549 250 53 125 chr15 88131446 88131535 -13248986 - MER102b DNA MER1_type -1324 104 10 189 291 97 29 chr15 88131626 88131729 -13248792 + MIR SINE MIR 37 146 -62 363 295 57 0 chr15 88133421 88133526 -13246995 - L2 LINE L2 -1 3271 3161 294 258 0 0 chr15 88133568 88133630 -13246891 + L2 LINE L2 3233 3294 -19 998 155 55 11 chr15 88135362 88135543 -13244978 + MER5A DNA MER1_type 1 189 0 200 240 0 20 chr15 88135563 88135613 -13244908 - L2 LINE L2 -6 3307 3259 2080 113 0 28 chr15 88135932 88136251 -13244270 - AluSg SINE Alu 0 310 1 25 0 0 0 chr15 88136840 88136865 -13243656 + AT_rich Low_complexity Low_complexity 1 25 0 210 319 53 18 chr15 88138976 88139089 -13241432 - MIR3 SINE MIR -14 194 78 910 223 21 5 chr15 88141580 88141773 -13238748 - MER63A DNA MER1_type -8 202 7 231 36 0 0 chr15 88144099 88144127 -13236394 + (CTG)n Simple_repeat Simple_repeat 3 30 0 203 0 0 36 chr15 88146738 88146766 -13233755 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 269 319 64 0 chr15 88147287 88147381 -13233140 - MER91C DNA MER1_type -40 100 1 25 0 0 0 chr15 88147590 88147615 -13232906 + AT_rich Low_complexity Low_complexity 1 25 0 1995 120 7 3 chr15 88147615 88147907 -13232614 + AluSg SINE Alu 1 293 -17 249 146 0 0 chr15 88147988 88148029 -13232492 - Alu SINE Alu -5 297 257 514 277 1 11 chr15 88148185 88148379 -13232142 + MER5B DNA MER1_type 7 171 -7 2260 116 0 0 chr15 88148693 88149004 -13231517 - AluSx SINE Alu -1 311 1 643 192 46 0 chr15 88149329 88149459 -13231062 + MER5B DNA MER1_type 1 136 -42 222 274 167 12 chr15 88149669 88149753 -13230768 + MIR SINE MIR 54 150 -112 243 222 19 37 chr15 88150166 88150274 -13230247 + (TA)n Simple_repeat Simple_repeat 1 106 0 201 74 0 0 chr15 88151626 88151653 -13228868 + (A)n Simple_repeat Simple_repeat 1 27 0 252 312 101 42 chr15 88152018 88152243 -13228278 - MIR SINE MIR -4 258 23 309 155 12 24 chr15 88156981 88157065 -13223456 + GA-rich Low_complexity Low_complexity 2 84 0 552 213 41 122 chr15 88157241 88157438 -13223083 + MER5A DNA MER1_type 4 184 -5 373 258 26 74 chr15 88157842 88157861 -13222660 - MER113 DNA MER1_type? -302 219 201 423 78 0 0 chr15 88157861 88157925 -13222596 + (TATG)n Simple_repeat Simple_repeat 2 65 0 373 258 26 74 chr15 88157925 88158007 -13222514 - MER113 DNA MER1_type? -320 201 117 2013 137 0 0 chr15 88158007 88158307 -13222214 - AluSx SINE Alu -12 300 1 373 258 26 74 chr15 88158307 88158433 -13222088 - MER113 DNA MER1_type? -404 117 2 700 182 28 0 chr15 88158920 88159063 -13221458 - MER103 DNA DNA -18 148 2 805 263 53 0 chr15 88160109 88160318 -13220203 - MIR SINE MIR -30 232 13 2095 122 0 13 chr15 88160701 88161005 -13219516 - AluSx SINE Alu -12 300 1 472 252 34 32 chr15 88161512 88161689 -13218832 - MIR SINE MIR 0 262 32 410 242 30 0 chr15 88162399 88162498 -13218023 + MER81 DNA DNA 4 105 -9 677 229 87 6 chr15 88162753 88162953 -13217568 - MIR SINE MIR -11 251 43 322 189 53 154 chr15 88163021 88163078 -13217443 + MER103 DNA DNA 1 62 -104 747 113 0 113 chr15 88163078 88163228 -13217293 - FLAM_C SINE Alu 0 133 1 322 189 53 154 chr15 88163228 88163339 -13217182 + MER103 DNA DNA 62 152 -14 450 205 12 0 chr15 88164762 88164845 -13215676 - MER58B DNA MER1_type 0 341 258 692 188 235 34 chr15 88164857 88165091 -13215430 + MER2 DNA MER2_type 30 310 -35 1062 256 31 8 chr15 88165109 88165363 -13215158 - MER58B DNA MER1_type -81 260 1 1963 117 7 4 chr15 88166990 88167294 -13213227 + AluSx SINE Alu 1 305 0 1140 175 18 18 chr15 88167312 88167540 -13212981 + AluJo SINE Alu 85 312 0 283 274 57 38 chr15 88167660 88167766 -13212755 - MIR SINE MIR -116 146 39 949 192 86 5 chr15 88170145 88170343 -13210178 - MER58A DNA MER1_type 0 224 11 638 254 20 51 chr15 88170360 88170503 -13210018 - MIR SINE MIR -71 191 54 2416 54 0 3 chr15 88170503 88170799 -13209722 - AluY SINE Alu -16 295 1 638 254 20 51 chr15 88170799 88170852 -13209669 - MIR SINE MIR -208 54 1 474 317 75 33 chr15 88171717 88171957 -13208564 - L3 LINE CR1 -7 1570 1321 337 254 95 48 chr15 88172271 88172397 -13208124 + MIR SINE MIR 64 195 -67 209 284 159 0 chr15 88172419 88172507 -13208014 - MIR SINE MIR -73 189 88 209 67 0 133 chr15 88173731 88173776 -13206745 + (A)n Simple_repeat Simple_repeat 1 39 0 1887 285 75 10 chr15 88174159 88174783 -13205738 - MER115 DNA AcHobo -19 674 10 1883 213 33 77 chr15 88175736 88176240 -13204281 + MLT2B1 LTR ERVL 1 481 -39 369 117 0 0 chr15 88176240 88176300 -13204221 + (TG)n Simple_repeat Simple_repeat 2 61 0 1883 213 33 77 chr15 88176300 88176339 -13204182 + MLT2B1 LTR ERVL 481 520 0 339 289 149 0 chr15 88176585 88176699 -13203822 - MER91B DNA MER1_type -8 182 52 229 150 25 0 chr15 88176772 88176812 -13203709 + MER5B DNA MER1_type 1 41 -137 * 299 240 53 0 chr15 88176807 88176882 -13203639 - MER5B DNA MER1_type -99 79 1 201 204 20 20 chr15 88178879 88178928 -13201593 + L3 LINE CR1 1490 1538 -39 1747 140 4 4 chr15 88179071 88179335 -13201186 - AluSx SINE Alu -48 264 1 472 308 92 40 chr15 88179504 88179852 -13200669 - L3 LINE CR1 -68 1509 1144 * 629 274 14 41 chr15 88179849 88180020 -13200501 - MIR3 SINE MIR -6 202 36 416 221 106 0 chr15 88180039 88180143 -13200378 + L2 LINE L2 3158 3272 0 457 319 0 0 chr15 88180453 88180566 -13199955 - MER63A DNA MER1_type 0 210 98 3114 131 12 125 chr15 88180667 88181345 -13199176 + MER7C DNA MER2_type 1 601 -1 227 286 157 28 chr15 88182262 88182402 -13198119 + MIR SINE MIR 32 184 -63 185 281 215 30 chr15 88182772 88182907 -13197614 + MIR3 SINE MIR 18 177 -31 467 263 34 46 chr15 88183728 88183903 -13196618 + MIR SINE MIR 20 192 -70 413 328 174 0 chr15 88184573 88184768 -13195753 - MIR SINE MIR -14 248 20 231 36 0 0 chr15 88185270 88185298 -13195223 + (A)n Simple_repeat Simple_repeat 1 28 0 980 276 120 18 chr15 88186459 88186762 -13193759 + L2 LINE L2 2763 3033 -280 1991 112 7 43 chr15 88186762 88187067 -13193454 - AluSx SINE Alu -18 294 1 980 276 120 18 chr15 88187067 88187254 -13193267 + L2 LINE L2 3033 3313 0 2349 72 13 0 chr15 88187315 88187621 -13192900 - AluY SINE Alu -1 310 1 1869 61 129 8 chr15 88188930 88189194 -13191327 + AluSx SINE Alu 1 296 -16 2915 181 48 4 chr15 88189350 88189876 -13190645 + MER77 LTR ERV1 54 602 -3 524 169 0 0 chr15 88190212 88190295 -13190226 + AluJ SINE Alu 27 109 -203 889 179 56 34 chr15 88190341 88190468 -13190053 + AluJ SINE Alu 108 242 -70 2845 104 3 0 chr15 88190468 88190842 -13189679 + THE1C LTR MaLR 1 375 0 889 179 56 34 chr15 88190842 88190893 -13189628 + AluJ SINE Alu 242 290 -22 712 327 24 5 chr15 88191546 88191757 -13188764 - MIR SINE MIR -33 229 15 25 0 0 0 chr15 88191865 88191890 -13188631 + AT_rich Low_complexity Low_complexity 1 25 0 1691 175 0 10 chr15 88191891 88192183 -13188338 - AluJo SINE Alu -23 289 1 193 176 0 0 chr15 88192209 88192243 -13188278 - L2 LINE L2 -4 3268 3235 880 135 14 7 chr15 88192726 88192874 -13187647 - L1MB3 LINE L1 -7 6176 6028 335 239 319 0 chr15 88193626 88193739 -13186782 + MIR SINE MIR 25 173 -89 2102 195 30 38 chr15 88193967 88194438 -13186083 + MLT1C LTR MaLR 1 467 0 222 37 0 0 chr15 88194579 88194606 -13185915 + (T)n Simple_repeat Simple_repeat 1 27 0 2033 138 0 0 chr15 88194688 88194986 -13185535 - AluSx SINE Alu -14 298 1 331 236 56 11 chr15 88195579 88195668 -13184853 - MER91C DNA MER1_type -15 125 33 583 256 62 0 chr15 88195980 88196140 -13184381 - MIR SINE MIR -20 242 73 463 252 27 0 chr15 88197067 88197178 -13183343 - L2 LINE L2 0 3313 3200 315 286 173 38 chr15 88197445 88197763 -13182758 - L2 LINE L2 -101 3212 2852 367 270 13 66 chr15 88199391 88199543 -13180978 + MER5B DNA MER1_type 2 145 -33 272 336 28 9 chr15 88200141 88200248 -13180273 + MIR3 SINE MIR 97 205 -3 299 266 75 11 chr15 88200841 88200935 -13179586 - MIR SINE MIR -92 170 71 289 268 289 36 chr15 88201138 88201332 -13179189 - MIR SINE MIR 0 262 20 1148 146 8 92 chr15 88201490 88201729 -13178792 - MER20 DNA MER1_type 0 219 1 446 285 62 8 chr15 88201767 88201897 -13178624 + L2 LINE L2 3136 3272 0 256 292 25 83 chr15 88201926 88202046 -13178475 + MIR SINE MIR 34 146 -62 351 0 0 0 chr15 88202476 88202515 -13178006 + (CA)n Simple_repeat Simple_repeat 1 39 0 216 236 14 14 chr15 88203224 88203296 -13177225 + (TA)n Simple_repeat Simple_repeat 1 72 0 414 217 158 0 chr15 88203316 88203436 -13177085 + MER112 DNA MER1_type 79 217 -43 2003 115 14 3 chr15 88203615 88203910 -13176611 + AluSx SINE Alu 1 298 -14 448 306 46 1 chr15 88204074 88204248 -13176273 - MIR SINE MIR -60 148 20 291 280 0 0 chr15 88204548 88204623 -13175898 - MIR SINE MIR 0 262 188 286 206 16 0 chr15 88204653 88204716 -13175805 + L2 LINE L2 3208 3271 -1 273 204 23 23 chr15 88205259 88205347 -13175174 + (CA)n Simple_repeat Simple_repeat 1 88 0 180 0 0 0 chr15 88205403 88205423 -13175098 + (CA)n Simple_repeat Simple_repeat 1 20 0 587 175 7 0 chr15 88205463 88205617 -13174904 + (CA)n Simple_repeat Simple_repeat 1 155 0 211 288 25 38 chr15 88205701 88205781 -13174740 + MIR SINE MIR 86 164 -98 200 305 133 0 chr15 88206132 88206237 -13174284 + MIR SINE MIR 2 120 -142 2080 189 48 7 chr15 88206962 88207395 -13173126 + L1MB7 LINE L1 5734 6184 0 23 0 0 0 chr15 88209719 88209742 -13170779 + GC_rich Low_complexity Low_complexity 1 23 0 211 379 48 8 chr15 88209992 88210116 -13170405 + MIR SINE MIR 19 147 -61 1264 189 44 37 chr15 88210502 88210798 -13169723 + L1M4 LINE L1 3907 4204 -1942 2212 106 3 0 chr15 88211230 88211533 -13168988 + AluSc SINE Alu 1 304 -5 1810 130 0 0 chr15 88212012 88212273 -13168248 + AluSg SINE Alu 1 261 -49 707 90 0 0 chr15 88212445 88212545 -13167976 - AluSg/x SINE Alu -7 302 203 704 109 109 124 chr15 88212545 88212598 -13167923 + MER30 DNA MER1_type 32 84 -146 1950 124 7 7 chr15 88212598 88212897 -13167624 + AluSx SINE Alu 1 299 -13 704 109 109 124 chr15 88212897 88213045 -13167476 + MER30 DNA MER1_type 84 230 0 210 242 16 16 chr15 88213067 88213129 -13167392 + C-rich Low_complexity Low_complexity 4 65 0 303 28 0 0 chr15 88213487 88213523 -13166998 + (CA)n Simple_repeat Simple_repeat 2 37 0 1712 137 99 0 chr15 88213625 88213909 -13166612 - AluSx SINE Alu 0 312 1 1706 179 0 3 chr15 88214134 88214425 -13166096 - AluSx SINE Alu 0 312 23 2299 102 0 6 chr15 88214995 88215355 -13165166 + AluSq SINE Alu 1 358 0 1462 168 12 81 chr15 88215705 88215899 -13164622 - AluJo SINE Alu -2 310 147 2206 100 0 3 chr15 88215899 88216209 -13164312 + AluY SINE Alu 1 309 -2 1462 168 12 81 chr15 88216209 88216347 -13164174 - AluJo SINE Alu -165 147 1 209 308 29 10 chr15 88217574 88217678 -13162843 + MIR SINE MIR 31 136 -126 287 231 80 0 chr15 88217814 88217921 -13162600 - MIR SINE MIR -61 147 62 566 44 7 74 chr15 88218091 88218103 -13162418 + (GAA)n Simple_repeat Simple_repeat 3 14 -114 2153 107 10 3 chr15 88218103 88218413 -13162108 + AluSq SINE Alu 1 312 -1 566 44 7 74 chr15 88218413 88218535 -13161986 + (GAA)n Simple_repeat Simple_repeat 14 128 0 553 148 188 0 chr15 88221109 88221210 -13159311 + 5S rRNA rRNA 1 120 -1 31 0 0 0 chr15 88221218 88221249 -13159272 + AT_rich Low_complexity Low_complexity 1 31 0 2053 105 9 43 chr15 88221249 88221572 -13158949 + AluSx SINE Alu 1 312 0 1852 128 3 34 chr15 88221580 88221876 -13158645 + AluJb SINE Alu 1 287 -25 225 0 0 0 chr15 88221890 88221915 -13158606 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 681 167 7 43 chr15 88221920 88222058 -13158463 + FLAM_A SINE Alu 1 133 0 2663 176 25 9 chr15 88222277 88222790 -13157731 + L1MB4 LINE L1 5643 6166 -14 1798 108 0 0 chr15 88222790 88223031 -13157490 - AluSx SINE Alu -11 301 61 1802 143 14 7 chr15 88223087 88223381 -13157140 - AluJb SINE Alu -16 296 1 803 132 33 0 chr15 88223495 88223616 -13156905 - FLAM_C SINE Alu -18 125 1 2186 78 23 23 chr15 88223678 88223986 -13156535 + AluY SINE Alu 1 308 -3 610 232 0 17 chr15 88224252 88224429 -13156092 + G-rich Low_complexity Low_complexity 2 175 0 207 187 209 33 chr15 88225540 88225631 -13154890 + MIR SINE MIR 29 135 -127 197 211 19 19 chr15 88227006 88227058 -13153463 - MIR3 SINE MIR -24 184 133 261 252 196 9 chr15 88227092 88227199 -13153322 - L3 LINE CR1 -78 1499 1373 559 376 98 28 chr15 88227234 88227521 -13153000 - L3 LINE CR1 -321 1256 990 2158 102 7 7 chr15 88227521 88227824 -13152697 - AluSx SINE Alu -9 303 1 559 376 98 28 chr15 88227824 88228284 -13152237 - L3 LINE CR1 -587 990 457 312 91 0 0 chr15 88228362 88228406 -13152115 + (T)n Simple_repeat Simple_repeat 1 44 0 227 181 83 28 chr15 88228494 88228566 -13151955 - L3 LINE CR1 -1131 446 371 377 260 232 11 chr15 88229043 88229224 -13151297 - MIR SINE MIR -40 222 2 1987 123 7 0 chr15 88229765 88230057 -13150464 + AluSx SINE Alu 17 310 -2 2194 109 0 6 chr15 88230082 88230394 -13150127 + AluSq SINE Alu 1 310 -3 1758 161 3 0 chr15 88231031 88231322 -13149199 + AluJb SINE Alu 1 292 -20 1776 120 11 4 chr15 88231403 88231679 -13148842 - AluJo SINE Alu -9 303 26 258 136 0 0 chr15 88231771 88231815 -13148706 + (A)n Simple_repeat Simple_repeat 1 44 0 970 161 35 0 chr15 88232103 88232277 -13148244 + AluJo SINE Alu 118 297 -15 1757 113 35 0 chr15 88232283 88232539 -13147982 + AluSx SINE Alu 3 267 -45 284 24 0 48 chr15 88232549 88232591 -13147930 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 752 127 71 8 chr15 88232614 88232740 -13147781 + AluJb SINE Alu 1 134 -178 188 291 90 67 chr15 88232990 88233124 -13147397 + L2 LINE L2 2928 3064 -208 436 258 39 23 chr15 88233225 88233353 -13147168 - MIR SINE MIR -55 207 78 195 346 85 8 chr15 88233369 88233475 -13147046 + L2 LINE L2 3173 3292 -21 1932 150 7 0 chr15 88233475 88233782 -13146739 + AluSx SINE Alu 1 309 -3 195 346 85 8 chr15 88233782 88233805 -13146716 + L2 LINE L2 3292 3312 -1 2166 88 7 0 chr15 88233833 88234165 -13146356 - AluSx SINE Alu 0 312 1 458 247 109 17 chr15 88234202 88234376 -13146145 - MIR SINE MIR -24 238 49 192 236 0 0 chr15 88235580 88235669 -13144852 + G-rich Low_complexity Low_complexity 1 89 0 858 268 61 4 chr15 88236395 88236641 -13143880 - MIR SINE MIR -1 261 2 285 188 0 0 chr15 88237909 88237948 -13142573 - MLT1B LTR MaLR 0 390 352 307 125 0 0 chr15 88237948 88237988 -13142533 + Alu SINE Alu 1 40 -263 1941 58 35 0 chr15 88238089 88238347 -13142174 - L1P LINE L1 -1124 5022 4756 918 77 0 0 chr15 88238347 88238477 -13142044 + L1P LINE L1 3257 3386 -2760 6924 51 6 0 chr15 88238477 88239339 -13141182 + L1P LINE L1 3687 4553 -1593 835 296 52 70 chr15 88239868 88240382 -13140139 - LTR33A LTR ERVL 0 523 19 180 0 0 0 chr15 88240690 88240710 -13139811 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 956 164 0 12 chr15 88240710 88240875 -13139646 - AluSg/x SINE Alu -32 278 116 234 184 0 0 chr15 88240881 88240930 -13139591 + L1MB7 LINE L1 6131 6179 -5 321 225 47 47 chr15 88240967 88241096 -13139425 + L1MC5 LINE L1 7807 7935 -26 192 244 122 49 chr15 88241620 88241702 -13138819 + MIR SINE MIR 59 146 -116 2048 96 0 34 chr15 88242019 88242343 -13138178 - AluSq SINE Alu 0 316 3 340 310 41 47 chr15 88242348 88242519 -13138002 - MIR SINE MIR -36 226 57 2083 131 0 3 chr15 88242581 88242895 -13137626 - AluSq SINE Alu 0 313 1 637 142 0 44 chr15 88242895 88242997 -13137524 - AluSg/x SINE Alu -9 300 202 921 105 0 0 chr15 88244454 88244587 -13135934 + AluSg/x SINE Alu 157 289 -23 881 147 94 18 chr15 88244587 88244805 -13135716 + L1M4 LINE L1 2802 3037 -3104 2067 119 0 22 chr15 88244805 88245124 -13135397 + AluSx SINE Alu 1 312 0 1714 167 23 7 chr15 88245152 88245451 -13135070 + AluSx SINE Alu 6 309 -3 1867 88 0 4 chr15 88245571 88245820 -13134701 - AluSq SINE Alu -59 254 7 198 0 0 0 chr15 88245825 88245847 -13134674 + (T)n Simple_repeat Simple_repeat 1 22 0 892 114 15 0 chr15 88245847 88245978 -13134543 - AluSq/x SINE Alu -180 133 1 25 0 0 0 chr15 88246305 88246330 -13134191 + AT_rich Low_complexity Low_complexity 1 25 0 231 36 0 0 chr15 88246530 88246558 -13133963 + (T)n Simple_repeat Simple_repeat 1 28 0 3517 52 2 9 chr15 88246558 88247005 -13133516 - SVA Other Other -228 1158 715 1002 187 62 130 chr15 88247408 88247703 -13132818 + MER2 DNA MER2_type 1 268 -77 1479 173 8 4 chr15 88247703 88247963 -13132558 - AluJb SINE Alu -19 293 33 1002 187 62 130 chr15 88247963 88248036 -13132485 + MER2 DNA MER2_type 268 344 -1 1535 136 21 42 chr15 88248174 88248500 -13132021 + AluSg SINE Alu 1 320 0 2001 140 0 0 chr15 88248510 88248810 -13131711 + AluSx SINE Alu 1 300 -12 2375 81 0 0 chr15 88248912 88249222 -13131299 + AluY SINE Alu 1 310 -1 270 0 0 0 chr15 88249412 88249442 -13131079 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2169 114 0 3 chr15 88249494 88249802 -13130719 - AluSx SINE Alu -5 307 1 420 172 328 22 chr15 88249802 88249936 -13130585 - AluJo SINE Alu -12 290 116 22 0 0 0 chr15 88249990 88250012 -13130509 + AT_rich Low_complexity Low_complexity 1 22 0 1546 168 48 0 chr15 88250017 88250285 -13130236 + AluJo SINE Alu 7 287 -25 23 0 0 29 chr15 88250285 88250296 -13130225 + AT_rich Low_complexity Low_complexity 1 11 -22 2092 136 0 0 chr15 88250296 88250604 -13129917 + AluSx SINE Alu 1 308 -4 23 0 0 29 chr15 88250604 88250626 -13129895 + AT_rich Low_complexity Low_complexity 11 33 0 577 223 26 106 chr15 88250626 88250882 -13129639 + L1MC4a LINE L1 5676 5826 -336 629 268 63 76 chr15 88250891 88250910 -13129611 - L2 LINE L2 -3 3310 3292 2104 103 13 0 chr15 88250910 88251211 -13129310 + AluSq SINE Alu 1 305 -8 629 268 63 76 chr15 88251211 88251493 -13129028 - L2 LINE L2 -21 3292 3013 1369 146 28 8 chr15 88251720 88251973 -13128548 - AluSg SINE Alu -12 298 41 964 164 25 6 chr15 88252077 88252236 -13128285 + THE1B LTR MaLR 203 364 0 233 182 212 74 chr15 88253237 88253440 -13127081 + L1MC4a LINE L1 5949 6179 -1629 1043 184 58 11 chr15 88253448 88253725 -13126796 - L1M4 LINE L1 -2865 3281 2992 294 132 0 0 chr15 88253736 88253789 -13126732 + (TG)n Simple_repeat Simple_repeat 2 54 0 1801 153 30 0 chr15 88253814 88254114 -13126407 - AluJb SINE Alu -3 309 1 340 290 20 20 chr15 88254123 88254223 -13126298 - L1M4 LINE L1 -2647 3499 3400 833 187 179 28 chr15 88254393 88254644 -13125877 - L1MC4 LINE L1 -1304 6738 6450 235 246 0 15 chr15 88255068 88255133 -13125388 - L1M4 LINE L1 -1820 4326 4263 2097 112 0 16 chr15 88255136 88255312 -13125209 - AluSx SINE Alu -3 309 139 2100 115 0 3 chr15 88255312 88255617 -13124904 - AluSx SINE Alu -8 304 1 2097 112 0 16 chr15 88255617 88255752 -13124769 - AluSx SINE Alu -173 139 3 862 115 0 8 chr15 88255814 88255944 -13124577 - FLAM_C SINE Alu -12 131 3 2376 161 35 5 chr15 88255947 88256350 -13124171 - Tigger4(Zombi) DNA MER2_type -2312 419 5 1032 124 7 7 chr15 88256371 88256524 -13123997 + AluSq SINE Alu 1 153 -160 309 183 135 58 chr15 88256531 88256635 -13123886 + L2 LINE L2 3202 3313 0 2129 81 41 14 chr15 88256702 88256836 -13123685 + AluSg1 SINE Alu 1 130 -179 2398 51 0 3 chr15 88256836 88257131 -13123390 + AluY SINE Alu 1 294 -17 2129 81 41 14 chr15 88257131 88257291 -13123230 + AluSg1 SINE Alu 130 303 -6 347 148 0 0 chr15 88257292 88257346 -13123175 + Tigger4(Zombi) DNA MER2_type 410 463 -2268 1308 87 6 0 chr15 88257348 88257520 -13123001 + AluSq SINE Alu 1 173 -140 402 109 0 0 chr15 88257521 88257576 -13122945 + Tigger4(Zombi) DNA MER2_type 1320 1374 -1357 819 67 9 0 chr15 88257624 88257729 -13122792 + AluSq/x SINE Alu 24 129 -183 8658 113 43 15 chr15 88257746 88258274 -13122247 + Tigger4(Zombi) DNA MER2_type 1362 1874 -857 2122 108 0 3 chr15 88258274 88258571 -13121950 + AluSq SINE Alu 1 296 -17 8658 113 43 15 chr15 88258571 88259374 -13121147 + Tigger4(Zombi) DNA MER2_type 1874 2730 -1 1799 156 0 0 chr15 88259422 88259733 -13120788 - AluJb SINE Alu 0 311 1 485 205 0 0 chr15 88259857 88259940 -13120581 + L2 LINE L2 3229 3311 -2 1087 218 102 82 chr15 88260236 88260787 -13119734 + MER34B LTR ERV1 2 563 -2 577 186 54 23 chr15 88261142 88261271 -13119250 - FLAM_A SINE Alu 0 133 1 1976 123 7 0 chr15 88261274 88261575 -13118946 - AluSx SINE Alu -9 303 1 752 228 23 97 chr15 88261719 88261849 -13118672 - HAL1 LINE L1 -2 2505 2367 2158 123 0 0 chr15 88261849 88262159 -13118362 - AluSx SINE Alu -2 310 1 2098 82 7 7 chr15 88262161 88262455 -13118066 - AluSx SINE Alu -17 295 2 752 228 23 97 chr15 88262455 88262663 -13117858 - HAL1 LINE L1 -141 2366 2189 439 316 14 19 chr15 88262649 88262858 -13117663 + L1ME1 LINE L1 5737 5944 -222 * 1274 143 15 68 chr15 88262935 88263200 -13117321 + AluJo SINE Alu 61 311 -1 266 259 9 60 chr15 88263469 88263585 -13116936 - HAL1 LINE L1 -1193 1314 1205 1113 145 12 0 chr15 88263587 88263759 -13116762 - AluSg/x SINE Alu -5 305 132 2070 112 0 38 chr15 88263759 88264072 -13116449 - AluSx SINE Alu -11 301 1 541 141 85 68 chr15 88264077 88264254 -13116267 - HAL1 LINE L1 -1312 1195 1016 281 314 105 0 chr15 88264270 88264394 -13116127 - HAL1 LINE L1 -2277 230 94 1989 124 0 0 chr15 88264473 88264783 -13115738 + AluSx SINE Alu 1 310 0 242 210 41 54 chr15 88265008 88265084 -13115437 - MER5A DNA MER1_type -44 139 64 189 0 0 0 chr15 88265085 88265106 -13115415 + (TG)n Simple_repeat Simple_repeat 2 22 0 232 121 0 0 chr15 88265114 88265147 -13115374 - Alu SINE Alu -15 118 86 995 219 0 18 chr15 88265147 88265371 -13115150 - AluJo SINE Alu -92 220 1 260 251 106 149 chr15 88265864 88266119 -13114402 + L3 LINE CR1 1321 1564 -13 513 222 183 26 chr15 88266155 88266308 -13114213 + MER5A DNA MER1_type 10 186 -3 184 191 43 21 chr15 88266914 88266961 -13113560 - MIR SINE MIR -79 129 82 2004 125 0 16 chr15 88267335 88267646 -13112875 - AluJo SINE Alu -6 306 1 2277 87 3 0 chr15 88267696 88267994 -13112527 - AluSp SINE Alu -14 299 1 553 167 78 0 chr15 88268166 88268256 -13112265 + AluJo SINE Alu 2 98 -214 320 268 260 0 chr15 88268469 88268592 -13111929 - MIR SINE MIR -3 259 105 2196 62 6 52 chr15 88268696 88269021 -13111500 - AluSg SINE Alu 0 310 1 208 231 19 19 chr15 88269142 88269194 -13111327 + L2 LINE L2 3220 3271 -1 1054 147 51 15 chr15 88269356 88269553 -13110968 + AluJo SINE Alu 85 288 -24 2235 104 0 0 chr15 88269676 88269975 -13110546 - AluSg SINE Alu -11 299 1 2335 75 0 0 chr15 88269994 88270288 -13110233 - AluY SINE Alu -6 305 12 208 183 17 117 chr15 88270307 88270367 -13110154 - L2 LINE L2 -11 3261 3208 404 273 66 37 chr15 88270751 88270946 -13109575 + MIR3 SINE MIR 13 219 -43 828 246 70 76 chr15 88271204 88271268 -13109253 - L1MC4a LINE L1 -1962 5846 5783 1818 125 10 55 chr15 88271268 88271580 -13108941 + AluJb SINE Alu 5 302 -10 828 246 70 76 chr15 88271580 88271857 -13108664 - L1MC4a LINE L1 -2025 5783 5507 300 253 176 0 chr15 88271875 88271966 -13108555 - L1MC4a LINE L1 -2384 5424 5318 2266 93 7 0 chr15 88271982 88272284 -13108237 + AluSp SINE Alu 1 304 -9 337 267 64 59 chr15 88272295 88272531 -13107990 - L1MC4a LINE L1 -843 5303 5067 754 204 0 0 chr15 88272646 88272778 -13107743 - FLAM_A SINE Alu 0 133 2 350 236 135 11 chr15 88272972 88273061 -13107460 - MIR3 SINE MIR -21 187 88 294 345 104 50 chr15 88273136 88273493 -13107028 - L2 LINE L2 0 3272 2897 861 242 70 101 chr15 88273501 88273773 -13106748 + L1MEd LINE L1 425 673 -5446 1955 126 3 19 chr15 88273773 88274091 -13106430 + AluSq SINE Alu 1 313 0 861 242 70 101 chr15 88274091 88274372 -13106149 + L1MEd LINE L1 673 961 -5158 238 104 15 119 chr15 88274371 88274438 -13106083 + L1MC5 LINE L1 6898 6957 -1004 * 337 168 84 65 chr15 88274421 88274528 -13105993 + L1MEd LINE L1 926 1034 -5085 1520 96 100 0 chr15 88274605 88274825 -13105696 + AluY SINE Alu 1 242 -69 359 295 0 11 chr15 88274927 88275022 -13105499 - HsTC2 DNA Tc2 -1758 140 47 254 219 31 42 chr15 88275158 88275254 -13105267 - L1ME LINE L1 -399 5722 5628 1600 170 7 3 chr15 88275280 88275593 -13104928 - AluJb SINE Alu 0 314 1 456 86 0 0 chr15 88275644 88275714 -13104807 + (CA)n Simple_repeat Simple_repeat 1 70 0 430 326 133 4 chr15 88277023 88277256 -13103265 - MLT1L LTR MaLR -4 611 349 277 211 0 0 chr15 88277256 88277308 -13103213 + LTR30 LTR ERV1 1 52 -670 790 133 1 171 chr15 88277312 88277498 -13103023 + LTR12 LTR ERV1 100 248 -466 2105 95 0 39 chr15 88277880 88278185 -13102336 - AluSx SINE Alu -15 297 5 397 273 68 43 chr15 88278215 88278376 -13102145 - MIR SINE MIR -78 184 20 610 229 138 28 chr15 88278527 88278745 -13101776 - MIR SINE MIR -8 254 13 395 208 9 57 chr15 88279187 88279293 -13101228 - MLT1K LTR MaLR -6 582 482 296 322 74 20 chr15 88279498 88279647 -13100874 - MLT1K LTR MaLR -390 198 42 2034 78 68 7 chr15 88279651 88279944 -13100577 + AluSq SINE Alu 1 311 -2 548 165 9 0 chr15 88279968 88280083 -13100438 + GA-rich Low_complexity Low_complexity 1 116 0 8125 34 78 16 chr15 88280385 88281476 -13099045 + SVA Other Other 1 1158 -228 231 36 0 0 chr15 88281476 88281504 -13099017 + (A)n Simple_repeat Simple_repeat 1 28 0 25 0 0 0 chr15 88281704 88281729 -13098792 + AT_rich Low_complexity Low_complexity 1 25 0 315 311 11 11 chr15 88282195 88282285 -13098236 - L1MC4 LINE L1 -1339 6703 6614 * 399 214 60 17 chr15 88282208 88282326 -13098195 + L1MC4 LINE L1 1995 6983 -1339 1849 128 59 14 chr15 88282350 88282638 -13097883 + AluJo SINE Alu 1 301 -11 297 248 15 79 chr15 88284025 88284145 -13096376 - L1M4c LINE L1 -3904 2636 2539 1843 144 10 24 chr15 88284145 88284443 -13096078 - AluJb SINE Alu -18 294 1 297 248 15 79 chr15 88284443 88284525 -13095996 - L1M4c LINE L1 -4001 2539 2453 720 215 0 0 chr15 88284605 88284735 -13095786 - AluJo SINE Alu -17 295 166 2466 91 3 0 chr15 88284771 88285078 -13095443 - AluSx SINE Alu -4 308 1 1041 140 34 6 chr15 88285079 88285257 -13095264 - AluJo SINE Alu -129 183 1 352 268 59 13 chr15 88285615 88285768 -13094753 - HAL1 LINE L1 -844 1663 1504 1194 127 0 0 chr15 88285773 88285931 -13094590 + AluSc SINE Alu 1 158 -151 1921 181 0 0 chr15 88286052 88286361 -13094160 + AluSx SINE Alu 1 309 -3 28 29 0 0 chr15 88286420 88286455 -13094066 + AT_rich Low_complexity Low_complexity 1 35 0 2319 85 0 0 chr15 88286466 88286793 -13093728 + AluY SINE Alu 1 327 0 2051 132 3 10 chr15 88286847 88287143 -13093378 + AluSx SINE Alu 1 294 -18 23 33 0 0 chr15 88287221 88287251 -13093270 + AT_rich Low_complexity Low_complexity 1 30 0 853 210 89 50 chr15 88287332 88287498 -13093023 - AluJo SINE Alu -8 304 121 207 0 0 0 chr15 88287498 88287521 -13093000 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 853 210 89 50 chr15 88287521 88287635 -13092886 - AluJo SINE Alu -191 121 13 1934 128 3 24 chr15 88287640 88287955 -13092566 - AluSx SINE Alu 0 309 1 759 126 60 7 chr15 88287956 88288107 -13092414 - LTR23 LTR ERV1 -132 305 147 2353 89 36 0 chr15 88288335 88288637 -13091884 + AluSp SINE Alu 1 313 0 1875 149 17 3 chr15 88288781 88289076 -13091445 - AluJo SINE Alu -1 311 13 260 250 0 0 chr15 88289645 88289705 -13090816 - MER110-int LTR ERV1 -2170 2477 2418 1638 142 68 27 chr15 88289717 88290013 -13090508 - AluJb SINE Alu -4 308 1 790 175 0 8 chr15 88290179 88290305 -13090216 + FLAM_C SINE Alu 6 130 -13 1293 129 0 5 chr15 88290406 88290600 -13089921 - THE1B LTR MaLR -167 197 5 837 103 0 8 chr15 88290600 88290717 -13089804 + AluSg/x SINE Alu 133 248 -64 1342 91 0 0 chr15 88290717 88290882 -13089639 - AluSc SINE Alu -142 167 3 659 258 135 0 chr15 88291102 88291346 -13089175 + L1ME4a LINE L1 5416 5692 -478 2240 133 0 13 chr15 88291346 88291662 -13088859 + AluJb SINE Alu 1 312 0 546 195 30 55 chr15 88291680 88291844 -13088677 + L1ME3A LINE L1 6011 6170 0 483 305 54 11 chr15 88291844 88292123 -13088398 + L1ME4a LINE L1 5830 6120 -1 285 335 22 51 chr15 88292130 88292446 -13088075 + L1M4 LINE L1 4769 5075 -1071 352 297 71 26 chr15 88292506 88292661 -13087860 + L1M4 LINE L1 4350 4511 -1635 1860 173 0 3 chr15 88293322 88293629 -13086892 + AluJo SINE Alu 1 306 -6 226 254 90 45 chr15 88293632 88293699 -13086822 + MIR SINE MIR 21 90 -172 802 191 0 58 chr15 88293699 88293872 -13086649 - FAM SINE Alu -1 48 1 288 251 135 104 chr15 88293883 88294046 -13086475 + MIR SINE MIR 94 261 -1 324 0 0 0 chr15 88294148 88294184 -13086337 + (TG)n Simple_repeat Simple_repeat 1 36 0 312 114 0 152 chr15 88294184 88294263 -13086258 - AluSg/x SINE Alu -23 279 213 207 133 0 44 chr15 88295641 88295686 -13084835 + (TTCCC)n Simple_repeat Simple_repeat 1 43 0 261 303 131 0 chr15 88296174 88296296 -13084225 - MIR SINE MIR -6 256 119 2090 124 0 3 chr15 88296431 88296740 -13083781 - AluSg SINE Alu 0 308 1 342 200 15 7 chr15 88297520 88297602 -13082919 - MLT1A1 LTR MaLR -1 364 293 801 184 80 31 chr15 88297618 88297781 -13082740 - FAM SINE Alu 0 175 5 765 181 14 0 chr15 88297786 88297930 -13082591 - MLT1A1 LTR MaLR -55 310 165 233 247 0 39 chr15 88298035 88298112 -13082409 + CT-rich Low_complexity Low_complexity 2 75 0 46 86 0 0 chr15 88298166 88298282 -13082239 + GC_rich Low_complexity Low_complexity 1 116 0 219 36 0 0 chr15 88298285 88298313 -13082208 + (CTGGGG)n Simple_repeat Simple_repeat 1 28 0 216 0 0 0 chr15 88298369 88298393 -13082128 + (CCGGG)n Simple_repeat Simple_repeat 2 25 0 21 57 0 0 chr15 88298428 88298463 -13082058 + GC_rich Low_complexity Low_complexity 1 35 0 225 210 0 0 chr15 88298489 88298551 -13081970 + CT-rich Low_complexity Low_complexity 2 63 0 217 264 19 0 chr15 88298804 88298857 -13081664 + CT-rich Low_complexity Low_complexity 3 56 0 207 204 0 0 chr15 88298913 88298957 -13081564 + CT-rich Low_complexity Low_complexity 2 45 0 26 30 0 0 chr15 88299053 88299086 -13081435 + GC_rich Low_complexity Low_complexity 1 33 0 184 57 29 29 chr15 88299995 88300030 -13080491 + (TTCCC)n Simple_repeat Simple_repeat 2 36 0 323 349 137 40 chr15 88300551 88300952 -13079569 - L2 LINE L2 -3 3269 2830 391 278 213 19 chr15 88301078 88301294 -13079227 + MIR SINE MIR 5 262 0 1563 162 52 22 chr15 88301867 88302139 -13078382 + AluJo SINE Alu 12 291 -21 959 131 92 79 chr15 88302142 88302328 -13078193 + L1MA8 LINE L1 5580 5771 -529 2274 131 0 3 chr15 88302328 88302641 -13077880 + AluSx SINE Alu 1 312 0 959 131 92 79 chr15 88302641 88302683 -13077838 + L1MA8 LINE L1 5771 5811 -489 1994 165 0 3 chr15 88302683 88303083 -13077438 - AluJb SINE Alu 0 402 4 280 98 0 0 chr15 88303083 88303124 -13077397 + L1MA8 LINE L1 5806 5846 -488 2653 112 62 0 chr15 88303172 88303591 -13076930 + L1MA8 LINE L1 5847 6291 0 792 139 0 9 chr15 88303676 88303791 -13076730 + FLAM_A SINE Alu 8 121 -21 325 276 17 82 chr15 88303809 88303931 -13076590 + HAL1 LINE L1 1446 1574 -933 2067 120 0 0 chr15 88303931 88304206 -13076315 - AluSq SINE Alu 0 313 39 325 276 17 82 chr15 88304206 88304305 -13076216 + HAL1 LINE L1 1574 1646 -861 2536 63 3 0 chr15 88304305 88304606 -13075915 - AluSp SINE Alu -11 302 1 325 276 17 82 chr15 88304606 88304676 -13075845 + HAL1 LINE L1 1646 1719 -788 1011 215 161 75 chr15 88304689 88305126 -13075395 + MLT1E LTR MaLR 1 535 -58 1931 165 0 13 chr15 88305126 88305442 -13075079 - AluJb SINE Alu 0 312 1 1011 215 161 75 chr15 88305442 88305474 -13075047 + MLT1E LTR MaLR 535 563 -30 2329 111 0 0 chr15 88305474 88305780 -13074741 - AluSg SINE Alu -4 306 1 531 244 85 49 chr15 88305903 88305944 -13074577 - MERVL LTR ERVL -3111 1885 1847 2134 127 3 13 chr15 88305944 88306252 -13074269 - AluSx SINE Alu -6 306 2 531 244 85 49 chr15 88306252 88306416 -13074105 - MERVL LTR ERVL -3149 1847 1687 2172 130 3 0 chr15 88306416 88306717 -13073804 - AluSx SINE Alu -10 302 1 296 333 18 9 chr15 88306803 88306917 -13073604 - MERVL LTR ERVL -4157 1607 1493 340 240 24 5 chr15 88307025 88307145 -13073376 - MERVL LTR ERVL -3785 1211 1091 1348 190 93 11 chr15 88307398 88307667 -13072854 - AluJo SINE Alu -21 291 1 1126 239 17 56 chr15 88307759 88308033 -13072488 - L1ME3A LINE L1 -208 5962 5679 2476 97 0 0 chr15 88308033 88308342 -13072179 - AluSc SINE Alu 0 309 1 1764 117 0 16 chr15 88308350 88308606 -13071915 - AluSx SINE Alu -6 306 55 1417 211 39 4 chr15 88308609 88308889 -13071632 - AluJb SINE Alu -22 290 1 1126 239 17 56 chr15 88308889 88309011 -13071510 - L1ME3A LINE L1 -500 5670 5569 253 91 0 91 chr15 88309011 88309055 -13071466 + LTR8 LTR ERV1 548 587 -104 906 223 0 23 chr15 88309217 88309392 -13071129 - AluJo SINE Alu -10 302 132 189 0 0 0 chr15 88309475 88309496 -13071025 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 699 208 8 0 chr15 88309496 88309616 -13070905 - AluJo SINE Alu -190 122 2 1597 103 14 31 chr15 88309974 88310197 -13070324 + AluSx SINE Alu 1 219 -93 854 126 0 0 chr15 88310197 88310316 -13070205 + AluSg/x SINE Alu 186 304 -6 1132 206 57 19 chr15 88310489 88310751 -13069770 - MER69 DNA AcHobo -1580 946 675 658 172 83 0 chr15 88310908 88311053 -13069468 + L1MA10 LINE L1 6163 6319 -15 21 0 0 0 chr15 88311101 88311122 -13069399 + AT_rich Low_complexity Low_complexity 1 21 0 983 199 0 0 chr15 88311139 88311379 -13069142 + FRAM SINE Alu 1 240 0 866 223 56 96 chr15 88311402 88311448 -13069073 - L1ME4a LINE L1 -69 6052 6006 2338 112 0 3 chr15 88311448 88311751 -13068770 - AluSx SINE Alu -10 302 1 866 223 56 96 chr15 88311751 88312237 -13068284 - L1ME4a LINE L1 -115 6006 5541 2152 109 6 31 chr15 88312609 88312929 -13067592 - AluSx SINE Alu 0 312 1 193 264 0 19 chr15 88313690 88313743 -13066778 - MIR SINE MIR -60 202 151 387 230 90 0 chr15 88313905 88314005 -13066516 + MIR SINE MIR 58 166 -96 281 212 84 32 chr15 88314040 88314171 -13066350 + L1ME LINE L1 5685 5822 -299 1793 161 3 27 chr15 88314178 88314477 -13066044 + AluJo SINE Alu 1 292 -20 2213 116 0 10 chr15 88314771 88315074 -13065447 + AluSx SINE Alu 1 300 -12 846 164 17 4 chr15 88315414 88315646 -13064875 + GA-rich Low_complexity Low_complexity 1 235 0 1894 164 10 6 chr15 88315647 88315958 -13064563 + AluJb SINE Alu 1 312 0 753 185 0 44 chr15 88315961 88316096 -13064425 + FLAM_C SINE Alu 2 130 -3 900 205 15 4 chr15 88316135 88316398 -13064123 + L1M3 LINE L1 3028 3293 -2853 1413 135 127 12 chr15 88316398 88316671 -13063850 + AluJo SINE Alu 13 313 0 1861 188 42 48 chr15 88316683 88317056 -13063465 + L1M3 LINE L1 4905 5279 -889 1750 112 112 4 chr15 88317056 88317323 -13063198 + AluSg SINE Alu 1 296 -14 2228 98 0 3 chr15 88317324 88317639 -13062882 + AluSx SINE Alu 1 314 0 1861 188 42 48 chr15 88317639 88317797 -13062724 + L1M3 LINE L1 5278 5442 -726 2346 100 0 3 chr15 88317797 88318096 -13062425 + AluSq SINE Alu 1 298 -15 183 158 53 0 chr15 88318220 88318258 -13062263 + MER5B DNA MER1_type 137 176 -2 360 217 94 80 chr15 88318395 88318533 -13061988 - MIR SINE MIR -4 258 119 194 389 49 6 chr15 88318578 88318740 -13061781 - L2 LINE L2 -469 2845 2677 1764 128 0 8 chr15 88319292 88319541 -13060980 - AluSx SINE Alu -22 290 44 832 172 0 0 chr15 88319697 88319825 -13060696 + FLAM_C SINE Alu 4 131 -2 369 224 193 44 chr15 88320307 88320527 -13059994 - MIR SINE MIR 0 262 3 872 143 8 0 chr15 88320679 88320805 -13059716 + FLAM_C SINE Alu 1 127 -6 56 16 0 0 chr15 88320805 88320868 -13059653 + AT_rich Low_complexity Low_complexity 1 63 0 207 0 0 0 chr15 88320964 88320987 -13059534 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 218 341 88 0 chr15 88321163 88321254 -13059267 - MIR SINE MIR -73 135 37 398 186 124 0 chr15 88321430 88321527 -13058994 - L1MA9 LINE L1 -22 6290 6182 854 129 71 71 chr15 88321531 88321649 -13058872 - L1MA9 LINE L1 -231 6081 5961 2144 108 28 0 chr15 88321649 88321936 -13058585 - AluSx SINE Alu -17 295 1 854 129 71 71 chr15 88321936 88322042 -13058479 - L1MA9 LINE L1 -350 5962 5857 22 56 0 0 chr15 88322379 88322415 -13058106 + GC_rich Low_complexity Low_complexity 1 36 0 390 229 250 14 chr15 88323179 88323319 -13057202 + MIR SINE MIR 22 194 -68 372 22 0 0 chr15 88323665 88323710 -13056811 + (CA)n Simple_repeat Simple_repeat 2 46 0 643 161 11 46 chr15 88323710 88323842 -13056679 + ORSL DNA AcHobo 13 139 -136 2153 111 14 0 chr15 88323842 88324139 -13056382 - AluSx SINE Alu -11 301 1 643 161 11 46 chr15 88324139 88324180 -13056341 + ORSL DNA AcHobo 139 180 -95 838 111 0 0 chr15 88324222 88324330 -13056191 + FLAM_A SINE Alu 18 125 -17 266 100 40 0 chr15 88324349 88324399 -13056122 + ORSL DNA AcHobo 181 232 -43 828 166 80 37 chr15 88324634 88324821 -13055700 - MER3 DNA MER1_type -14 195 1 2040 104 72 0 chr15 88325248 88325526 -13054995 - AluSx SINE Alu -14 298 1 2266 122 10 0 chr15 88325623 88325926 -13054595 - AluSx SINE Alu -6 306 1 1458 137 0 0 chr15 88326047 88326252 -13054269 - AluSx SINE Alu -9 303 99 2774 101 0 8 chr15 88326252 88326630 -13053891 + THE1C LTR MaLR 1 375 0 766 119 0 0 chr15 88326631 88326732 -13053789 - AluSx SINE Alu -210 102 2 194 216 0 0 chr15 88326747 88326784 -13053737 - MIR SINE MIR -2 260 224 1494 91 11 159 chr15 88327234 88327505 -13053016 + LTR23 LTR ERV1 1 210 -227 2163 129 0 3 chr15 88327505 88327808 -13052713 - AluSx SINE Alu -1 311 10 1494 91 11 159 chr15 88327808 88327887 -13052634 + LTR23 LTR ERV1 210 299 -138 839 148 14 0 chr15 88327946 88328088 -13052433 + LTR23 LTR ERV1 293 436 -1 2160 115 3 0 chr15 88328500 88328796 -13051725 - AluSx SINE Alu -15 297 1 1331 127 49 122 chr15 88328796 88329065 -13051456 + LTR23-int LTR ERV1 2700 2934 -3397 1328 185 99 34 chr15 88329065 88329357 -13051164 - AluJo SINE Alu -1 311 1 1331 127 49 122 chr15 88329357 88329473 -13051048 + LTR23-int LTR ERV1 2934 3057 -3274 997 163 7 0 chr15 88329473 88329767 -13050754 - FRAM SINE Alu 0 293 1 929 157 17 72 chr15 88329767 88330003 -13050518 + LTR23-int LTR ERV1 3050 3272 -3059 400 264 0 0 chr15 88330054 88330141 -13050380 + LTR23-int LTR ERV1 3264 3350 -2981 476 216 88 0 chr15 88330188 88330290 -13050231 + LTR23-int LTR ERV1 3354 3464 -2867 496 195 61 46 chr15 88330391 88330507 -13050014 + LTR23-int LTR ERV1 1742 1855 -3210 1978 169 7 0 chr15 88330507 88330814 -13049707 - AluJb SINE Alu -1 311 3 496 195 61 46 chr15 88330814 88331013 -13049508 + LTR23-int LTR ERV1 1855 2106 -2959 349 182 20 0 chr15 88331122 88331221 -13049300 + GA-rich Low_complexity Low_complexity 1 101 0 189 0 0 0 chr15 88331243 88331264 -13049257 + (CGG)n Simple_repeat Simple_repeat 3 23 0 2226 76 0 7 chr15 88332102 88332377 -13048144 - AluSg SINE Alu -16 294 22 251 275 228 20 chr15 88333799 88333948 -13046573 - MIR3 SINE MIR -21 187 8 414 250 80 0 chr15 88334345 88334457 -13046064 + L2 LINE L2 3190 3310 -3 2522 65 0 13 chr15 88334664 88334972 -13045549 - AluSc SINE Alu -5 304 1 285 280 183 0 chr15 88335119 88335212 -13045309 - MIR SINE MIR -147 115 6 235 309 140 34 chr15 88335694 88335901 -13044620 - L2 LINE L2 -91 3222 2994 365 253 33 0 chr15 88335948 88336039 -13044482 + MER5A DNA MER1_type 9 102 -87 181 345 17 78 chr15 88336072 88336188 -13044333 + MIR SINE MIR 23 131 -77 366 238 0 26 chr15 88336800 88336947 -13043574 - MIR SINE MIR -15 247 29 2230 122 7 3 chr15 88337821 88338125 -13042396 - AluSx SINE Alu -7 305 1 253 327 193 25 chr15 88338280 88338711 -13041810 + L2 LINE L2 2437 2939 -375 461 198 10 10 chr15 88339040 88339141 -13041380 + MIR SINE MIR 42 142 -120 315 252 212 13 chr15 88339142 88339293 -13041228 + MIR SINE MIR 6 186 -76 795 117 0 8 chr15 88340137 88340257 -13040264 + FLAM_C SINE Alu 1 119 -14 2163 112 3 0 chr15 88340867 88341174 -13039347 + AluSp SINE Alu 1 308 0 1575 141 0 9 chr15 88341248 88341475 -13039046 + AluJo SINE Alu 87 311 -1 313 247 241 0 chr15 88342904 88343066 -13037455 + MIR SINE MIR 33 233 -29 466 211 53 0 chr15 88343092 88343187 -13037334 - MIR SINE MIR -110 152 53 198 309 36 56 chr15 88343641 88343765 -13036756 + L2 LINE L2 1335 1453 -1861 2377 111 0 0 chr15 88343765 88344062 -13036459 - AluSx SINE Alu -15 297 1 198 309 36 56 chr15 88344062 88344186 -13036335 + L2 LINE L2 1453 1578 -1736 204 330 156 28 chr15 88344194 88344975 -13035546 + L2 LINE L2 1802 2682 -632 680 312 66 38 chr15 88345410 88345907 -13034614 + L1ME4a LINE L1 5387 5897 -224 706 167 23 38 chr15 88345962 88346094 -13034427 + AluJo SINE Alu 3 132 -170 2168 130 0 23 chr15 88346214 88346521 -13034000 + AluSx SINE Alu 1 300 -12 661 195 43 30 chr15 88346553 88346717 -13033804 + AluJo SINE Alu 137 302 0 25 31 0 0 chr15 88346814 88346846 -13033675 + AT_rich Low_complexity Low_complexity 1 32 0 2378 86 0 19 chr15 88347009 88347324 -13033197 - AluY SINE Alu -2 309 1 451 146 31 0 chr15 88347333 88347429 -13033092 - L1MB3 LINE L1 0 6183 6085 925 163 0 86 chr15 88347429 88347620 -13032901 - AluJo SINE Alu -16 296 120 2225 112 3 0 chr15 88347635 88347929 -13032592 - AluSx SINE Alu -17 295 1 1669 135 8 8 chr15 88347940 88348184 -13032337 - AluJb SINE Alu -25 287 44 1951 131 0 0 chr15 88348184 88348444 -13032077 - AluSq SINE Alu -53 260 1 2380 103 3 0 chr15 88349287 88349588 -13030933 + AluSx SINE Alu 1 302 -10 480 59 15 0 chr15 88349927 88349995 -13030526 + MER41B LTR ERV1 479 547 -88 2621 60 3 0 chr15 88350047 88350349 -13030172 + AluSp SINE Alu 1 303 -10 3344 147 17 15 chr15 88350730 88351322 -13029199 + L1MB3 LINE L1 5506 6098 -85 2245 125 0 3 chr15 88351323 88351627 -13028894 + AluSx SINE Alu 1 303 -9 772 196 0 0 chr15 88351637 88351770 -13028751 + FLAM_C SINE Alu 1 133 0 3861 113 52 75 chr15 88351786 88352523 -13027998 - Tigger2 DNA MER2_type 0 2718 1999 245 263 0 13 chr15 88352786 88352862 -13027659 - L1MC4 LINE L1 -444 7598 7524 468 163 0 12 chr15 88352878 88352964 -13027557 + AluJo SINE Alu 57 141 -171 2117 127 0 19 chr15 88352964 88353279 -13027242 + AluJb SINE Alu 1 309 -3 27 29 0 0 chr15 88353285 88353319 -13027202 + AT_rich Low_complexity Low_complexity 1 34 0 424 269 54 81 chr15 88353321 88353507 -13027014 - L1ME4a LINE L1 -229 5892 5712 2302 101 27 0 chr15 88354133 88354431 -13026090 - AluSx SINE Alu -6 306 1 1686 185 31 89 chr15 88354778 88355212 -13025309 - HsTC2 DNA Tc2 0 1898 1321 2473 79 0 7 chr15 88355212 88355517 -13025004 - AluSx SINE Alu -9 303 1 1686 185 31 89 chr15 88355517 88355601 -13024920 - HsTC2 DNA Tc2 -577 1321 1234 2399 107 3 0 chr15 88355847 88356156 -13024365 + AluSx SINE Alu 1 310 -2 379 121 0 0 chr15 88357706 88357764 -13022757 - AluS SINE Alu -242 58 1 2382 106 3 0 chr15 88357836 88358139 -13022382 + AluSp SINE Alu 1 304 -9 2503 80 0 0 chr15 88358211 88358513 -13022008 + AluSc SINE Alu 3 304 -5 320 316 89 38 chr15 88358514 88358985 -13021536 - HAL1b LINE L1 -846 502 8 196 229 82 33 chr15 88360090 88360151 -13020370 - L2 LINE L2 -19 3294 3231 273 286 135 75 chr15 88360359 88360392 -13020129 + MIR SINE MIR 116 146 -116 2081 110 11 4 chr15 88360392 88360699 -13019822 + AluSx SINE Alu 1 309 0 273 286 135 75 chr15 88360699 88360797 -13019724 + MIR SINE MIR 146 256 -6 2883 150 15 79 chr15 88360874 88361529 -13018992 - L1MB3 LINE L1 0 6183 5571 747 191 165 0 chr15 88361973 88362161 -13018360 + MER20 DNA MER1_type 1 219 0 473 296 190 28 chr15 88362965 88363181 -13017340 - MIR SINE MIR 0 262 12 296 272 87 10 chr15 88364823 88364926 -13015595 - L2 LINE L2 -16 3256 3146 2209 98 0 0 chr15 88365071 88365368 -13015153 - AluSx SINE Alu 0 301 5 222 105 0 0 chr15 88365378 88365416 -13015105 + (T)n Simple_repeat Simple_repeat 1 38 0 2325 109 0 3 chr15 88366188 88366501 -13014020 - AluSx SINE Alu 0 312 1 227 217 72 14 chr15 88367613 88367682 -13012839 - MIR SINE MIR -109 153 81 220 191 0 21 chr15 88367756 88367803 -13012718 - MIR SINE MIR -108 154 109 201 282 173 0 chr15 88367859 88367969 -13012552 - MIR3 SINE MIR -2 206 78 2484 80 0 0 chr15 88368330 88368631 -13011890 + AluY SINE Alu 1 301 -10 1709 162 14 17 chr15 88368659 88368956 -13011565 - AluJo SINE Alu -16 296 1 224 329 0 0 chr15 88369001 88369083 -13011438 - L2 LINE L2 -4 3268 3187 506 278 112 23 chr15 88370259 88370518 -13010003 + L2 LINE L2 3031 3312 -1 264 239 70 0 chr15 88371186 88371257 -13009264 + MIR SINE MIR 120 195 -67 393 270 218 21 chr15 88373373 88373950 -13006571 + L2 LINE L2 2622 3313 0 426 207 30 5 chr15 88374166 88374276 -13006245 + MIR SINE MIR 42 148 -63 2399 73 0 36 chr15 88374433 88374734 -13005787 + AluSg SINE Alu 3 292 -18 356 200 0 104 chr15 88374734 88374859 -13005662 + L1ME1 LINE L1 5928 6039 -127 354 309 8 8 chr15 88374870 88374996 -13005525 - MIR SINE MIR -112 150 25 1331 98 0 0 chr15 88374999 88375162 -13005359 - AluSg/x SINE Alu -15 295 133 1342 245 70 17 chr15 88375403 88375758 -13004763 - MER63 DNA MER1_type -9 1053 680 477 261 101 6 chr15 88375973 88376147 -13004374 - MIR SINE MIR -53 209 21 376 230 149 27 chr15 88377345 88377493 -13003028 - MIR SINE MIR -21 241 76 180 0 0 0 chr15 88377565 88377585 -13002936 + (CCCTG)n Simple_repeat Simple_repeat 1 20 0 191 402 22 11 chr15 88378141 88378320 -13002201 + L2 LINE L2 2628 2808 -506 493 245 0 0 chr15 88378508 88378614 -13001907 - FLAM_A SINE Alu -36 106 1 319 289 22 0 chr15 88378629 88378719 -13001802 - L2 LINE L2 -29 3243 3152 2030 173 0 0 chr15 88379075 88379382 -13001139 - AluSx SINE Alu 0 312 6 198 190 240 66 chr15 88379693 88379814 -13000707 + MIR SINE MIR 76 217 -45 568 284 31 58 chr15 88380046 88380394 -13000127 - L1ME LINE L1 -511 5651 5290 2164 77 0 50 chr15 88380418 88380744 -12999777 - AluY SINE Alu 0 311 1 317 261 72 27 chr15 88380887 88380998 -12999523 - L1MC5 LINE L1 -29 7932 7817 2287 84 3 0 chr15 88381195 88381508 -12999013 - AluSp SINE Alu 0 314 1 795 117 0 8 chr15 88382117 88382237 -12998284 - FLAM_C SINE Alu -14 119 1 315 257 177 55 chr15 88382982 88383232 -12997289 - MIR SINE MIR -6 256 6 472 198 10 10 chr15 88383233 88383334 -12997187 - MIR SINE MIR -120 142 42 377 325 179 37 chr15 88383629 88384094 -12996427 - L2 LINE L2 -347 2967 2437 2129 122 7 3 chr15 88384249 88384553 -12995968 + AluSx SINE Alu 1 305 -7 284 289 101 7 chr15 88385048 88385197 -12995324 + MER103 DNA DNA 3 165 -1 2093 97 3 47 chr15 88385493 88385812 -12994709 - AluSq SINE Alu -3 310 6 344 194 16 0 chr15 88385996 88386058 -12994463 - U7 snRNA snRNA 0 63 1 2225 97 0 0 chr15 88386128 88386427 -12994094 - AluSq SINE Alu -10 303 5 372 306 77 49 chr15 88386572 88386977 -12993544 - L1ME LINE L1 -439 5918 5503 315 337 101 52 chr15 88387036 88387443 -12993078 - L1ME LINE L1 -5174 1210 784 2131 111 0 0 chr15 88387446 88387754 -12992767 + AluSx SINE Alu 2 309 0 648 200 67 0 chr15 88387779 88387899 -12992622 + FRAM SINE Alu 38 165 -11 535 283 30 61 chr15 88387991 88388221 -12992300 - MIR SINE MIR -12 250 28 362 332 88 42 chr15 88388256 88388518 -12992003 - L1MC4a LINE L1 -1846 5962 5689 265 294 60 68 chr15 88388526 88388645 -12991876 - L1ME LINE L1 -392 5729 5611 191 36 36 0 chr15 88388645 88388673 -12991848 + (TA)n Simple_repeat Simple_repeat 1 29 0 2068 64 0 8 chr15 88388673 88388939 -12991582 - AluSx SINE Alu -46 266 3 265 294 60 68 chr15 88388939 88389066 -12991455 - L1ME LINE L1 -508 5613 5484 316 402 79 0 chr15 88389106 88389314 -12991207 + L1ME LINE L1 5599 5816 -305 2282 64 0 3 chr15 88390670 88390968 -12989553 + AluY SINE Alu 1 297 -14 914 140 0 0 chr15 88391101 88391244 -12989277 - FLAM_C SINE Alu 0 143 1 3260 143 36 62 chr15 88391245 88391964 -12988557 - L1MB8 LINE L1 -40 6138 5441 2035 126 17 0 chr15 88391964 88392257 -12988264 - AluSx SINE Alu -14 298 1 3260 143 36 62 chr15 88392257 88392340 -12988181 - L1MB8 LINE L1 -737 5441 5357 426 242 154 6 chr15 88392956 88393114 -12987407 + MER5A DNA MER1_type 5 189 0 2272 113 0 0 chr15 88393284 88393585 -12986936 + AluSx SINE Alu 1 301 -11 495 171 166 11 chr15 88393585 88393759 -12986762 + L1M4 LINE L1 2884 3088 -3058 2156 103 7 0 chr15 88393759 88394050 -12986471 + AluSp SINE Alu 1 293 -20 324 324 73 7 chr15 88394073 88394209 -12986312 - L1MC4a LINE L1 -1607 6201 6057 1059 257 47 88 chr15 88394309 88394741 -12985780 - L1MC4a LINE L1 -1907 5901 5499 1993 148 3 0 chr15 88394741 88395038 -12985483 - AluJb SINE Alu -14 298 1 1059 257 47 88 chr15 88395038 88395205 -12985316 - L1MC4a LINE L1 -2309 5499 5327 2105 104 0 0 chr15 88395218 88395496 -12985025 - AluSg SINE Alu -32 278 1 281 281 44 35 chr15 88395496 88395584 -12984937 - L1ME LINE L1 -374 5747 5656 1561 154 92 0 chr15 88395584 88395856 -12984665 - AluSx SINE Alu -15 297 1 281 281 44 35 chr15 88395856 88395881 -12984640 - L1ME LINE L1 -465 5656 5633 1807 210 77 57 chr15 88396450 88396945 -12983576 + MLT1D LTR MaLR 1 505 0 2180 105 13 0 chr15 88397055 88397361 -12983160 + AluSx SINE Alu 1 310 -2 200 281 34 45 chr15 88398067 88398156 -12982365 - MIR SINE MIR -60 148 61 274 270 0 0 chr15 88398904 88398967 -12981554 + MIR3 SINE MIR 109 171 -37 495 163 12 0 chr15 88399909 88399995 -12980526 + MIR SINE MIR 67 153 -109 2454 77 0 0 chr15 88401032 88401342 -12979179 - AluY SINE Alu -1 310 1 352 281 39 42 chr15 88401699 88401975 -12978546 - L2 LINE L2 -223 3049 2771 214 255 0 0 chr15 88401976 88402023 -12978498 - L2 LINE L2 -2 3270 3224 1214 126 0 22 chr15 88402103 88402285 -12978236 - AluSc SINE Alu 0 309 132 2123 109 0 3 chr15 88402285 88402609 -12977912 - AluSg SINE Alu 0 310 1 431 265 127 5 chr15 88402697 88402886 -12977635 - L2 LINE L2 -237 3035 2824 517 321 206 18 chr15 88404200 88404814 -12975707 - L2 LINE L2 -3 3269 2535 2186 85 24 10 chr15 88404993 88405288 -12975233 - AluSg SINE Alu -11 299 1 401 264 129 0 chr15 88405310 88405450 -12975071 - MIR SINE MIR -42 220 63 242 277 179 9 chr15 88407725 88407837 -12972684 + MIR SINE MIR 46 176 -86 187 208 0 42 chr15 88409222 88409270 -12971251 + L3 LINE CR1 1434 1479 -98 645 263 39 29 chr15 88411699 88411859 -12968662 + MIR SINE MIR 34 198 -64 2280 89 30 0 chr15 88411859 88412163 -12968358 + AluSp SINE Alu 1 313 0 645 263 39 29 chr15 88412163 88412207 -12968314 + MIR SINE MIR 198 240 -22 468 261 56 0 chr15 88412400 88412542 -12967979 - L2 LINE L2 -213 3059 2910 202 222 269 9 chr15 88413605 88413717 -12966804 - MIR SINE MIR -55 153 14 2175 89 4 0 chr15 88413729 88414052 -12966469 - AluSg SINE Alu 0 324 1 2080 133 0 0 chr15 88414064 88414357 -12966164 - AluSx SINE Alu -19 293 1 185 333 40 13 chr15 88414358 88414433 -12966088 - L2 LINE L2 -11 3261 3185 187 197 91 76 chr15 88414452 88414518 -12966003 - L2 LINE L2 -12 3301 3235 646 176 88 0 chr15 88414616 88414741 -12965780 + MIR SINE MIR 17 152 -110 229 233 300 0 chr15 88415485 88415575 -12964946 + MIR SINE MIR 33 149 -59 454 280 63 58 chr15 88415719 88415908 -12964613 + L1ME4a LINE L1 5672 5861 -260 2374 61 0 32 chr15 88415915 88416227 -12964294 + AluY SINE Alu 1 302 -9 601 223 47 28 chr15 88416232 88416447 -12964074 - HAL1 LINE L1 -220 2287 2069 1561 173 23 27 chr15 88416478 88416779 -12963742 - AluJo SINE Alu -12 300 1 1902 282 138 36 chr15 88416876 88418192 -12962329 - HAL1 LINE L1 -742 1765 271 2094 106 0 0 chr15 88418192 88418510 -12962011 - AluSx SINE Alu 0 318 1 1902 282 138 36 chr15 88418510 88418709 -12961812 - HAL1 LINE L1 -2236 271 94 255 252 130 9 chr15 88418864 88418979 -12961542 + L1ME4a LINE L1 5962 6090 -31 2214 109 0 7 chr15 88418988 88419292 -12961229 - AluSx SINE Alu -9 303 2 208 343 45 0 chr15 88420708 88420775 -12959746 - MIR SINE MIR -183 79 10 2068 122 0 46 chr15 88420959 88421286 -12959235 + AluSx SINE Alu 1 312 0 209 339 52 15 chr15 88421983 88422117 -12958404 + MIR SINE MIR 15 149 -96 429 271 100 47 chr15 88422455 88422622 -12957899 - L1MC5 LINE L1 -64 7897 7740 2235 73 40 3 chr15 88422622 88422922 -12957599 - AluY SINE Alu 0 311 1 2270 87 0 10 chr15 88422922 88423219 -12957302 - AluSx SINE Alu -16 296 2 429 271 100 47 chr15 88423219 88423411 -12957110 - L1MC5 LINE L1 -220 7741 7518 477 272 0 22 chr15 88424250 88424434 -12956087 + (TG)n Simple_repeat Simple_repeat 1 180 0 505 245 5 27 chr15 88424585 88424769 -12955752 + (TG)n Simple_repeat Simple_repeat 1 180 0 394 261 0 43 chr15 88424915 88425103 -12955418 + (TG)n Simple_repeat Simple_repeat 1 180 0 2216 88 0 3 chr15 88425281 88425577 -12954944 - AluY SINE Alu -16 295 1 445 277 112 39 chr15 88425934 88426391 -12954130 + MLT1K LTR MaLR 10 563 -25 333 227 23 23 chr15 88426441 88426529 -12953992 + MIR SINE MIR 113 200 -62 257 271 100 0 chr15 88427887 88427957 -12952564 + L2 LINE L2 3194 3270 -2 682 148 52 7 chr15 88428033 88428188 -12952333 + L1MB3 LINE L1 5769 5930 -253 2289 91 3 22 chr15 88428226 88428544 -12951977 + AluSp SINE Alu 1 312 -1 21 0 0 0 chr15 88428789 88428810 -12951711 + AT_rich Low_complexity Low_complexity 1 21 0 796 126 14 63 chr15 88428810 88428953 -12951568 - AluJo SINE Alu -176 136 1 2361 72 0 3 chr15 88429008 88429299 -12951222 + AluSc SINE Alu 1 290 -19 1616 179 50 0 chr15 88429531 88429828 -12950693 + AluJb SINE Alu 1 312 0 957 157 7 0 chr15 88429898 88430051 -12950470 - AluSg/x SINE Alu -11 301 148 438 20 0 0 chr15 88430211 88430262 -12950259 + (CA)n Simple_repeat Simple_repeat 1 51 0 223 288 25 38 chr15 88430346 88430426 -12950095 + MIR SINE MIR 86 164 -98 219 305 133 0 chr15 88430776 88430881 -12949640 + MIR SINE MIR 2 120 -142 2041 190 51 7 chr15 88431606 88432038 -12948483 + L1MB7 LINE L1 5734 6184 0 23 0 0 0 chr15 88434349 88434372 -12946149 + GC_rich Low_complexity Low_complexity 1 23 0 236 315 162 0 chr15 88434632 88434743 -12945778 + MIR SINE MIR 16 144 -118 1291 189 44 37 chr15 88435131 88435427 -12945094 + L1M4 LINE L1 3907 4204 -1942 2182 106 3 0 chr15 88435859 88436162 -12944359 + AluSc SINE Alu 1 304 -5 1789 130 0 0 chr15 88436641 88436902 -12943619 + AluSg SINE Alu 1 261 -49 699 90 0 0 chr15 88437074 88437174 -12943347 - AluSg/x SINE Alu -7 303 204 1172 121 0 30 chr15 88437212 88437227 -12943294 + AluSq SINE Alu 122 136 -177 1899 139 10 7 chr15 88437227 88437530 -12942991 + AluSx SINE Alu 1 304 -8 1172 121 0 30 chr15 88437530 88437712 -12942809 + AluSq SINE Alu 136 313 0 528 280 71 34 chr15 88437717 88437985 -12942536 + HAL1b LINE L1 680 957 -391 1723 147 0 38 chr15 88438069 88438522 -12941999 - AluJo SINE Alu 0 442 1 2014 116 10 3 chr15 88438778 88439080 -12941441 - AluSx SINE Alu -8 304 1 1941 117 0 48 chr15 88440230 88440399 -12940122 - AluSx SINE Alu -11 301 152 2324 70 0 3 chr15 88440399 88440699 -12939822 - AluY SINE Alu -11 300 2 1941 117 0 48 chr15 88440699 88440845 -12939676 - AluSx SINE Alu -160 152 1 1760 146 26 23 chr15 88440969 88441278 -12939243 + AluJo SINE Alu 1 310 -2 2038 70 0 0 chr15 88442238 88442495 -12938026 - AluY SINE Alu -15 296 40 2115 105 0 3 chr15 88443247 88443541 -12936980 - AluY SINE Alu -18 293 1 2658 74 6 3 chr15 88443567 88443917 -12936604 - L1PA7 LINE L1 -13 6141 5791 1767 138 11 21 chr15 88444584 88444867 -12935654 - AluJb SINE Alu -10 302 23 2209 96 0 0 chr15 88445215 88445507 -12935014 - AluSg SINE Alu -14 296 5 199 220 17 68 chr15 88445737 88445796 -12934725 + L2 LINE L2 3220 3275 -38 637 243 36 121 chr15 88445920 88446200 -12934321 + MIR SINE MIR 2 257 -5 582 278 38 53 chr15 88446218 88446484 -12934037 - L3 LINE CR1 -39 1538 1277 371 203 139 63 chr15 88447237 88447395 -12933126 - MER104 DNA Tc2 -3 177 8 2146 97 42 99 chr15 88447396 88447849 -12932672 + SVA Other Other 442 868 -518 1253 105 18 57 chr15 88447920 88448253 -12932268 + SVA Other Other 547 866 -520 1240 118 56 59 chr15 88448268 88448624 -12931897 + SVA Other Other 512 866 -520 6638 53 22 53 chr15 88448641 88450222 -12930299 + SVA Other Other 432 1385 -1 2068 95 46 0 chr15 88450391 88450676 -12929845 - AluSx SINE Alu -14 298 1 198 219 59 92 chr15 88451074 88451193 -12929328 - L3 LINE CR1 0 1577 1463 1603 168 6 32 chr15 88452466 88452781 -12927740 + AluSx SINE Alu 5 311 -1 329 190 130 10 chr15 88453050 88453150 -12927371 - L1ME3A LINE L1 -1 6169 6058 347 266 158 7 chr15 88453547 88453686 -12926835 + L1ME LINE L1 5560 5719 -451 821 217 72 57 chr15 88453741 88453919 -12926602 - HAL1 LINE L1 -1122 1385 1198 2146 116 0 0 chr15 88453919 88454220 -12926301 - AluSx SINE Alu -11 301 1 821 217 72 57 chr15 88454220 88454373 -12926148 - HAL1 LINE L1 -1309 1198 1049 21 0 0 0 chr15 88454473 88454494 -12926027 + AT_rich Low_complexity Low_complexity 1 21 0 1391 131 0 14 chr15 88454512 88454733 -12925788 - AluSg/x SINE Alu -8 304 87 500 239 85 11 chr15 88454770 88454946 -12925575 - HAL1 LINE L1 -1540 967 779 498 127 0 25 chr15 88454990 88455069 -12925452 - LTR7 LTR ERV1 0 450 374 535 315 82 48 chr15 88455081 88455128 -12925393 + L1ME4a LINE L1 4733 4777 -1369 1756 161 0 35 chr15 88455128 88455444 -12925077 + AluJo SINE Alu 1 305 -7 535 315 82 48 chr15 88455444 88455688 -12924833 + L1ME4a LINE L1 4777 5034 -1112 1576 194 14 0 chr15 88456302 88456590 -12923931 + AluJb SINE Alu 1 292 -20 2009 147 0 3 chr15 88456771 88457084 -12923437 + AluSx SINE Alu 1 312 0 657 160 40 20 chr15 88458050 88458200 -12922321 - L1MB3 LINE L1 0 6183 6031 1199 156 214 8 chr15 88458202 88458459 -12922062 + AluY SINE Alu 1 310 -1 783 270 101 53 chr15 88458996 88459192 -12921329 + L1ME4a LINE L1 5272 5457 -664 1593 165 0 62 chr15 88459192 88459382 -12921139 - AluJo SINE Alu -8 304 141 1888 127 7 10 chr15 88459382 88459681 -12920840 - AluSx SINE Alu -14 298 1 1593 165 0 62 chr15 88459681 88459812 -12920709 - AluJo SINE Alu -171 141 3 783 270 101 53 chr15 88459812 88460238 -12920283 + L1ME4a LINE L1 5457 5924 -197 1389 144 21 8 chr15 88460241 88460477 -12920044 - AluSg/x SINE Alu -8 304 66 883 136 0 0 chr15 88460726 88460866 -12919655 - FLAM_C SINE Alu -3 140 1 3760 142 36 62 chr15 88460867 88461586 -12918935 - L1MB8 LINE L1 -40 6138 5441 1974 126 17 0 chr15 88461586 88461879 -12918642 - AluSx SINE Alu -14 298 1 3760 142 36 62 chr15 88461879 88461962 -12918559 - L1MB8 LINE L1 -737 5441 5357 464 242 154 6 chr15 88462578 88462736 -12917785 + MER5A DNA MER1_type 5 189 0 1900 119 32 0 chr15 88462905 88463182 -12917339 + AluSx SINE Alu 1 286 -26 2149 88 34 0 chr15 88463366 88463546 -12916975 - AluSg SINE Alu -5 305 110 225 65 0 0 chr15 88463546 88463577 -12916944 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 2149 88 34 0 chr15 88463577 88463691 -12916830 - AluSg SINE Alu -200 110 1 2037 126 0 0 chr15 88465297 88465591 -12914930 + AluSx SINE Alu 14 307 -5 2137 97 27 0 chr15 88465593 88465891 -12914630 + AluSg SINE Alu 1 306 -4 1955 135 3 3 chr15 88466159 88466456 -12914065 + AluSx SINE Alu 1 297 -15 614 183 0 0 chr15 88466662 88466766 -12913755 + U6 snRNA snRNA 1 104 -3 2032 98 26 19 chr15 88466878 88467185 -12913336 - AluSc SINE Alu 0 309 1 1625 174 27 3 chr15 88467297 88467590 -12912931 - AluJb SINE Alu -8 304 5 1933 143 0 25 chr15 88467751 88468065 -12912456 + AluSx SINE Alu 1 306 -6 2132 88 7 10 chr15 88468307 88468603 -12911918 + AluSg SINE Alu 1 295 -15 248 309 0 48 chr15 88468699 88468783 -12911738 + MIR SINE MIR 44 123 -85 331 294 181 17 chr15 88468915 88469092 -12911429 + L1M4 LINE L1 3775 3980 -2166 1223 159 73 0 chr15 88469194 88469414 -12911107 - MER46A DNA MER2_type 0 236 1 1420 186 69 4 chr15 88469577 88469692 -12910829 + AluJb SINE Alu 3 109 -203 351 0 0 0 chr15 88469692 88469731 -12910790 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 1420 186 69 4 chr15 88469731 88469889 -12910632 + AluJb SINE Alu 109 294 -18 3704 161 48 75 chr15 88469926 88470685 -12909836 - L1MB7 LINE L1 -96 6088 5310 727 216 0 0 chr15 88470685 88470810 -12909711 - FLAM_A SINE Alu -7 126 2 3704 161 48 75 chr15 88470810 88471151 -12909370 - L1MB7 LINE L1 -874 5310 5049 2267 92 0 3 chr15 88471151 88471455 -12909066 + AluSg SINE Alu 1 303 -7 3704 161 48 75 chr15 88471455 88471791 -12908730 - L1MB7 LINE L1 -1135 5049 4706 1423 127 0 9 chr15 88471793 88472006 -12908515 - AluJb SINE Alu -17 295 85 2466 167 51 41 chr15 88472006 88472593 -12907928 - L1MB7 LINE L1 -1434 4712 4120 331 266 92 28 chr15 88472599 88472708 -12907813 - L1MC5 LINE L1 -448 7513 7398 205 301 150 8 chr15 88474590 88474723 -12905798 + MIR SINE MIR 90 241 -21 322 263 162 13 chr15 88475093 88475243 -12905278 - MIR SINE MIR -56 206 35 3680 136 47 23 chr15 88475319 88475490 -12905031 - MER41B LTR ERV1 -1 634 469 1936 84 109 0 chr15 88475490 88475764 -12904757 - AluSp SINE Alu -9 304 1 3680 136 47 23 chr15 88475764 88476210 -12904311 - MER41B LTR ERV1 -166 469 2 2110 104 16 3 chr15 88476518 88476825 -12903696 - AluSx SINE Alu -1 311 1 486 164 248 75 chr15 88476836 88477027 -12903494 - MIR SINE MIR -14 248 15 304 333 44 7 chr15 88477101 88477236 -12903285 - MIR3 SINE MIR 0 208 69 327 291 109 6 chr15 88477523 88477688 -12902833 + L2 LINE L2 2855 3036 -236 251 154 0 0 chr15 88478037 88478076 -12902445 + MLT1B LTR MaLR 1 39 -351 391 150 0 0 chr15 88478076 88478136 -12902385 + AluS SINE Alu 1 60 -243 1992 124 10 0 chr15 88478163 88478462 -12902059 + AluSx SINE Alu 1 302 -10 2431 86 0 0 chr15 88478474 88478787 -12901734 + AluSq SINE Alu 1 313 0 437 221 105 132 chr15 88479103 88479361 -12901160 - MIR SINE MIR -4 258 8 240 277 25 59 chr15 88479511 88479630 -12900891 - MIR SINE MIR -64 144 30 1149 203 23 0 chr15 88479891 88480108 -12900413 - MER58A DNA MER1_type 0 224 3 1964 130 3 7 chr15 88480142 88480442 -12900079 - AluSx SINE Alu -13 299 1 2375 88 0 0 chr15 88480625 88480930 -12899591 - AluSx SINE Alu -7 305 1 2466 54 0 0 chr15 88482184 88482481 -12898040 + AluY SINE Alu 1 297 -14 599 235 24 125 chr15 88483366 88483655 -12896866 + L2 LINE L2 3012 3271 -1 525 282 125 5 chr15 88483838 88484074 -12896447 + L1ME3A LINE L1 5631 5897 -296 2145 116 0 25 chr15 88484098 88484236 -12896285 + AluSx SINE Alu 1 141 -171 2212 96 0 10 chr15 88484236 88484539 -12895982 + AluSg SINE Alu 1 300 -10 1403 150 0 21 chr15 88484487 88484720 -12895801 + AluSg/x SINE Alu 85 312 0 2145 116 0 25 chr15 88484539 88484720 -12895801 + AluSx SINE Alu 141 312 0 924 96 0 0 chr15 88484979 88485094 -12895427 - AluSq/x SINE Alu -193 120 6 185 386 50 0 chr15 88485099 88485200 -12895321 + L2 LINE L2 3197 3302 -11 691 252 237 15 chr15 88485588 88485921 -12894600 + MLT1I LTR MaLR 3 409 0 2137 102 3 14 chr15 88485973 88486379 -12894142 + AluSp SINE Alu 2 404 0 833 129 7 50 chr15 88486836 88486975 -12893546 - FLAM_C SINE Alu 0 133 1 324 102 0 0 chr15 88486981 88487030 -12893491 + (TTCC)n Simple_repeat Simple_repeat 3 51 0 788 111 41 18 chr15 88487032 88487203 -12893318 + CT-rich Low_complexity Low_complexity 1 175 0 2311 101 0 3 chr15 88487203 88487511 -12893010 - AluSx SINE Alu -5 307 1 2429 73 0 7 chr15 88487579 88487881 -12892640 - AluY SINE Alu -11 300 1 2589 155 61 3 chr15 88487981 88488455 -12892066 - MER44D DNA MER2_type 0 605 14 296 171 40 26 chr15 88488466 88488542 -12891979 + MLT1L LTR MaLR 487 563 -52 895 233 49 84 chr15 88490018 88490387 -12890134 + L1MC4 LINE L1 7624 7979 -63 698 246 57 32 chr15 88492118 88492366 -12888155 + L1ME3A LINE L1 3864 4117 -2029 1957 109 69 0 chr15 88492383 88492658 -12887863 - AluSx SINE Alu -18 294 1 592 285 49 30 chr15 88492682 88492859 -12887662 + L1ME3A LINE L1 5300 5485 -679 1337 221 79 72 chr15 88492859 88493262 -12887259 - MLT1I LTR MaLR -3 406 1 592 285 49 30 chr15 88493262 88493351 -12887170 + L1ME3A LINE L1 5485 5571 -593 704 287 67 21 chr15 88493490 88493772 -12886749 + L1ME3A LINE L1 5615 5909 -261 2334 92 0 13 chr15 88493792 88494098 -12886423 + AluSx SINE Alu 1 302 -10 2131 89 64 0 chr15 88494304 88494584 -12885937 - AluSp SINE Alu -15 298 1 871 162 0 0 chr15 88495188 88495324 -12885197 - AluJo SINE Alu -176 136 1 1053 287 77 31 chr15 88495407 88495863 -12884658 + MLT1H LTR MaLR 71 547 -2 291 157 0 0 chr15 88495982 88496033 -12884488 + (CA)n Simple_repeat Simple_repeat 2 52 0 2969 116 11 36 chr15 88496165 88496604 -12883917 - MSTC LTR MaLR 0 428 1 243 0 0 0 chr15 88497384 88497411 -12883110 + (TG)n Simple_repeat Simple_repeat 1 27 0 258 236 270 0 chr15 88498167 88498256 -12882265 + L2 LINE L2 3183 3295 -18 195 186 47 0 chr15 88498275 88498318 -12882203 + L2 LINE L2 3269 3313 0 696 269 117 0 chr15 88498796 88498993 -12881528 - MIR SINE MIR -4 258 39 245 241 172 11 chr15 88499031 88499118 -12881403 - L1ME3A LINE L1 0 6170 6070 1928 127 42 0 chr15 88499130 88499413 -12881108 - AluJo SINE Alu -17 295 1 240 354 38 75 chr15 88499468 88499680 -12880841 - MIR SINE MIR -46 216 13 2431 86 7 0 chr15 88499683 88499984 -12880537 - AluSx SINE Alu -9 303 1 366 253 35 0 chr15 88501372 88501459 -12879062 + MER63 DNA MER1_type 23 738 -324 277 186 200 0 chr15 88501466 88501536 -12878985 + MER63 DNA MER1_type 979 1062 0 2007 129 16 7 chr15 88501917 88502226 -12878295 - AluSx SINE Alu 0 312 1 26 30 0 0 chr15 88502247 88502280 -12878241 + AT_rich Low_complexity Low_complexity 1 33 0 764 186 8 0 chr15 88502458 88502582 -12877939 - FLAM_C SINE Alu -8 125 1 701 157 15 22 chr15 88503624 88503758 -12876763 + MER5A DNA MER1_type 1 133 -56 567 217 0 9 chr15 88503760 88503866 -12876655 - FLAM_A SINE Alu -18 124 20 349 206 16 0 chr15 88503867 88503930 -12876591 + MER5A DNA MER1_type 125 188 -1 286 247 56 0 chr15 88503932 88504021 -12876500 - L1MC4a LINE L1 -1904 5904 5811 373 237 26 159 chr15 88504041 88504165 -12876356 - L1ME3A LINE L1 -8 6162 6082 2062 135 23 0 chr15 88504165 88504468 -12876053 + AluJb SINE Alu 1 310 -2 373 237 26 159 chr15 88504468 88504575 -12875946 - L1ME3A LINE L1 -88 6082 5962 2555 253 19 22 chr15 88504630 88504948 -12875573 - L1ME3A LINE L1 -208 5962 5644 680 186 18 9 chr15 88504948 88505061 -12875460 - MER81 DNA DNA 0 114 1 2555 253 19 22 chr15 88505061 88505647 -12874874 - L1ME3A LINE L1 -526 5644 5062 1854 155 0 29 chr15 88505662 88505972 -12874549 - AluJb SINE Alu -11 301 1 943 143 0 0 chr15 88505978 88506111 -12874410 - AluSq/x SINE Alu -179 133 1 271 327 52 48 chr15 88506118 88506387 -12874134 - L1ME3A LINE L1 -1094 5052 4783 233 188 47 0 chr15 88506399 88506463 -12874058 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 860 229 6 6 chr15 88506583 88506749 -12873772 - AluJo SINE Alu -26 286 121 378 0 0 0 chr15 88506786 88506828 -12873693 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 1562 195 14 4 chr15 88506828 88507105 -12873416 - AluJb SINE Alu -32 280 1 191 388 148 21 chr15 88507260 88507551 -12872970 + L2 LINE L2 2945 3272 0 701 178 30 102 chr15 88507975 88508239 -12872282 + L1MEc LINE L1 2081 2325 -4071 1047 170 13 0 chr15 88508242 88508401 -12872120 + FAM SINE Alu 2 162 -13 1556 190 18 7 chr15 88508474 88508753 -12871768 - AluJb SINE Alu -30 282 1 3750 221 60 44 chr15 88508814 88509457 -12871064 + L1MEc LINE L1 2315 2947 -3268 2368 107 0 0 chr15 88509457 88509756 -12870765 + AluSg SINE Alu 1 299 -11 3750 221 60 44 chr15 88509756 88509930 -12870591 + L1MEc LINE L1 2947 3117 -3098 2319 97 3 3 chr15 88509930 88510239 -12870282 + AluSg1 SINE Alu 1 309 0 3750 221 60 44 chr15 88510239 88510729 -12869792 + L1MEc LINE L1 3117 3643 -2572 1133 208 42 5 chr15 88510732 88510948 -12869573 + AluJb SINE Alu 85 308 -4 1071 78 0 0 chr15 88511113 88511242 -12869279 + AluSq/x SINE Alu 1 129 -184 192 40 0 0 chr15 88511242 88511267 -12869254 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1845 173 3 10 chr15 88511378 88511549 -12868972 - AluJb SINE Alu -7 305 135 2316 74 32 0 chr15 88511549 88511834 -12868687 - AluSg SINE Alu -16 294 1 1845 173 3 10 chr15 88511834 88511969 -12868552 - AluJb SINE Alu -177 135 1 239 133 0 22 chr15 88512238 88512283 -12868238 - MER69 DNA AcHobo -48 2478 2435 * 1190 193 83 0 chr15 88512278 88512506 -12868015 - MER69 DNA AcHobo -979 247 1 2157 112 3 34 chr15 88512668 88512991 -12867530 + AluSp SINE Alu 1 313 0 23 0 0 0 chr15 88513004 88513027 -12867494 + AT_rich Low_complexity Low_complexity 1 23 0 2257 86 20 3 chr15 88514145 88514447 -12866074 + AluY SINE Alu 1 307 -4 2078 125 14 7 chr15 88515407 88515702 -12864819 + AluSx SINE Alu 1 297 -15 777 104 9 0 chr15 88515702 88515797 -12864724 - U6 snRNA snRNA -8 99 1 645 196 0 9 chr15 88516074 88516203 -12864318 + MLT1C LTR MaLR 263 467 0 2329 103 0 0 chr15 88516257 88516558 -12863963 + AluSx SINE Alu 2 302 -10 633 195 0 8 chr15 88516577 88516700 -12863821 - Zaphod DNA AcHobo -10 4021 3900 621 227 0 0 chr15 88516700 88516819 -12863702 + L1MD3 LINE L1 7159 7277 -718 442 156 16 123 chr15 88516820 88516881 -12863640 + MLT1F1 LTR MaLR 1 44 -523 2438 69 7 3 chr15 88516881 88517186 -12863335 - AluSq SINE Alu -7 306 1 442 156 16 123 chr15 88517186 88517246 -12863275 + MLT1F1 LTR MaLR 44 109 -458 3022 175 28 38 chr15 88517247 88517847 -12862674 + L1MD3 LINE L1 7393 7986 -9 780 184 0 28 chr15 88518510 88518651 -12861870 - AluJo SINE Alu -174 138 2 657 228 119 51 chr15 88518652 88518962 -12861559 - L1MC5 LINE L1 -431 7530 7250 812 197 52 77 chr15 88519005 88519315 -12861206 - L1MC5 LINE L1 -737 7224 6923 275 252 29 29 chr15 88519332 88519435 -12861086 - L1P LINE L1 -2455 3691 3589 * 326 264 30 36 chr15 88519418 88519441 -12861080 - L1MA10 LINE L1 0 6334 6312 2084 204 70 22 chr15 88519441 88519839 -12860682 - L1ME2 LINE L1 -13 6151 5719 2359 97 0 0 chr15 88519839 88520150 -12860371 - AluY SINE Alu 0 311 1 2084 204 70 22 chr15 88520150 88520295 -12860226 - L1ME2 LINE L1 -445 5719 5582 707 155 0 0 chr15 88520296 88520393 -12860128 + FLAM_C SINE Alu 20 116 -27 618 114 45 131 chr15 88520400 88520576 -12859945 - L1ME2 LINE L1 -798 5348 5188 21 0 0 0 chr15 88520576 88520597 -12859924 + AT_rich Low_complexity Low_complexity 1 21 0 3127 177 81 44 chr15 88521740 88522478 -12858043 - L1ME1 LINE L1 0 6178 5440 1959 125 21 0 chr15 88522478 88522758 -12857763 - AluSx SINE Alu -26 286 1 3127 177 81 44 chr15 88522758 88523276 -12857245 - L1ME1 LINE L1 -738 5440 4943 956 248 28 21 chr15 88523253 88523535 -12856986 - L1ME2 LINE L1 -996 5150 4867 * 827 117 0 47 chr15 88523583 88523711 -12856810 + FLAM_C SINE Alu 13 134 -9 356 289 81 97 chr15 88523743 88524124 -12856397 - L2 LINE L2 0 3272 2898 258 293 78 0 chr15 88525602 88525718 -12854803 + L1 LINE L1 4208 4332 -1814 1998 120 27 10 chr15 88525718 88526010 -12854511 + AluSp SINE Alu 1 297 -16 2370 84 0 7 chr15 88526255 88526553 -12853968 + AluSx SINE Alu 1 296 -16 535 240 27 13 chr15 88526793 88526943 -12853578 + MER104 DNA Tc2 2 153 -27 540 290 131 30 chr15 88527084 88527542 -12852979 + L2 LINE L2 2764 3259 -54 2140 92 54 3 chr15 88527674 88527968 -12852553 - AluSg SINE Alu -1 309 1 323 233 27 0 chr15 88528216 88528289 -12852232 - Alu SINE Alu -2 299 225 234 167 19 0 chr15 88528294 88528348 -12852173 + HsTC2 DNA Tc2 2 56 -1842 421 108 77 0 chr15 88528348 88528413 -12852108 + AluSp/q SINE Alu 230 299 -14 387 248 174 25 chr15 88578559 88578720 -12801801 - MIR SINE MIR -73 189 5 312 355 138 38 chr15 88578846 88579246 -12801275 + L2 LINE L2 2830 3269 -3 184 57 29 29 chr15 88579766 88579801 -12800720 + (GGGAA)n Simple_repeat Simple_repeat 2 36 0 515 141 33 11 chr15 88580094 88580208 -12800313 + AluSg/x SINE Alu 203 310 0 2048 86 62 10 chr15 88580228 88580519 -12800002 - AluSq SINE Alu -7 306 1 240 210 41 54 chr15 88580588 88580664 -12799857 - MER5A DNA MER1_type -44 139 64 189 0 0 0 chr15 88580665 88580686 -12799835 + (TG)n Simple_repeat Simple_repeat 2 22 0 1058 220 5 18 chr15 88580727 88580950 -12799571 - AluJo SINE Alu -92 220 1 283 322 35 78 chr15 88581443 88581698 -12798823 + L3 LINE CR1 1321 1564 -13 510 222 183 26 chr15 88581734 88581887 -12798634 + MER5A DNA MER1_type 10 186 -3 188 191 43 21 chr15 88582492 88582539 -12797982 - MIR SINE MIR -79 129 82 2156 125 0 16 chr15 88582913 88583224 -12797297 - AluJo SINE Alu -6 306 1 304 207 120 111 chr15 88583228 88583274 -12797247 - L1 LINE L1 -2946 3200 3156 2424 87 3 0 chr15 88583274 88583572 -12796949 - AluSp SINE Alu -14 299 1 304 207 120 111 chr15 88583572 88583733 -12796788 - L1 LINE L1 -2990 3156 2991 1883 159 38 0 chr15 88583743 88584032 -12796489 + AluJo SINE Alu 1 300 -12 340 237 178 37 chr15 88584036 88584171 -12796350 - L1ME4a LINE L1 -2 6119 5966 2524 81 0 0 chr15 88584173 88584483 -12796038 - AluY SINE Alu -1 310 1 2151 140 0 0 chr15 88584585 88584885 -12795636 - AluSx SINE Alu -12 300 1 1667 136 21 42 chr15 88584895 88585221 -12795300 - AluSg SINE Alu 0 320 1 253 299 15 0 chr15 88585359 88585426 -12795095 - MER2 DNA MER2_type -1 344 277 1585 173 8 4 chr15 88585431 88585691 -12794830 + AluJb SINE Alu 33 293 -19 23 0 0 0 chr15 88585712 88585735 -12794786 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr15 88585760 88585791 -12794730 + AT_rich Low_complexity Low_complexity 1 31 0 958 108 119 31 chr15 88585792 88585986 -12794535 - MER2 DNA MER2_type -134 211 1 1388 144 40 58 chr15 88586510 88586787 -12793734 + AluSg SINE Alu 1 272 -38 324 0 0 0 chr15 88586792 88586828 -12793693 + (CA)n Simple_repeat Simple_repeat 1 36 0 292 251 135 104 chr15 88586930 88587093 -12793428 - MIR SINE MIR -1 261 94 802 183 0 69 chr15 88587104 88587279 -12793242 + FAM SINE Alu 1 48 -1 226 254 90 45 chr15 88587277 88587344 -12793177 - MIR SINE MIR -172 90 21 * 1708 173 0 3 chr15 88587347 88587654 -12792867 - AluJo SINE Alu -6 306 1 336 295 58 26 chr15 88588312 88588468 -12792053 - L1M4 LINE L1 -1636 4510 4350 315 335 22 51 chr15 88588528 88588844 -12791677 - L1M4 LINE L1 -1071 5075 4769 504 280 72 29 chr15 88588851 88589130 -12791391 - L1ME4a LINE L1 -1 6120 5830 581 195 30 55 chr15 88589130 88589294 -12791227 - L1ME3A LINE L1 0 6170 6011 2081 133 0 13 chr15 88589312 88589628 -12790893 - AluJb SINE Alu 0 312 1 731 254 135 0 chr15 88589628 88589872 -12790649 - L1ME4a LINE L1 -478 5692 5416 1261 91 0 0 chr15 88590092 88590257 -12790264 + AluSc SINE Alu 3 167 -142 806 108 0 0 chr15 88590257 88590368 -12790153 - AluSg/x SINE Alu -64 248 138 2363 139 11 19 chr15 88590370 88590737 -12789784 + THE1B LTR MaLR 1 364 0 233 182 212 74 chr15 88591738 88591941 -12788580 + L1MC4a LINE L1 5949 6179 -1629 1043 184 58 11 chr15 88591949 88592226 -12788295 - L1M4 LINE L1 -2865 3281 2992 294 132 0 0 chr15 88592237 88592290 -12788231 + (TG)n Simple_repeat Simple_repeat 2 54 0 1801 153 30 0 chr15 88592315 88592615 -12787906 - AluJb SINE Alu -3 309 1 340 290 20 20 chr15 88592624 88592724 -12787797 - L1M4 LINE L1 -2647 3499 3400 833 187 179 28 chr15 88592894 88593145 -12787376 - L1MC4 LINE L1 -1304 6738 6450 235 246 0 15 chr15 88593569 88593634 -12786887 - L1ME4a LINE L1 -1820 4326 4263 2097 112 0 16 chr15 88593637 88593813 -12786708 - AluSx SINE Alu -3 309 139 2100 115 0 3 chr15 88593813 88594118 -12786403 - AluSx SINE Alu -8 304 1 2097 112 0 16 chr15 88594118 88594253 -12786268 - AluSx SINE Alu -173 139 3 862 115 0 8 chr15 88594315 88594445 -12786076 - FLAM_C SINE Alu -12 131 3 2394 164 35 2 chr15 88594448 88594850 -12785671 - Tigger4(Zombi) DNA MER2_type -2312 419 5 1032 124 7 7 chr15 88594871 88595024 -12785497 + AluSq SINE Alu 1 153 -160 309 183 135 58 chr15 88595031 88595135 -12785386 + L2 LINE L2 3202 3313 0 2129 81 41 14 chr15 88595202 88595336 -12785185 + AluSg1 SINE Alu 1 130 -179 2420 48 0 3 chr15 88595336 88595631 -12784890 + AluY SINE Alu 1 294 -17 2129 81 41 14 chr15 88595631 88595791 -12784730 + AluSg1 SINE Alu 130 303 -6 347 148 0 0 chr15 88595792 88595846 -12784675 + Tigger4(Zombi) DNA MER2_type 410 463 -2268 1308 87 6 0 chr15 88595848 88596020 -12784501 + AluSq SINE Alu 1 173 -140 402 109 0 0 chr15 88596021 88596076 -12784445 + Tigger4(Zombi) DNA MER2_type 1320 1374 -1357 819 67 9 0 chr15 88596124 88596229 -12784292 + AluSq/x SINE Alu 24 129 -183 8658 113 43 15 chr15 88596246 88596774 -12783747 + Tigger4(Zombi) DNA MER2_type 1362 1874 -857 2122 108 0 3 chr15 88596774 88597071 -12783450 + AluSq SINE Alu 1 296 -17 8658 113 43 15 chr15 88597071 88597874 -12782647 + Tigger4(Zombi) DNA MER2_type 1874 2730 -1 1799 156 0 0 chr15 88597922 88598233 -12782288 - AluJb SINE Alu 0 311 1 485 205 0 0 chr15 88598357 88598440 -12782081 + L2 LINE L2 3229 3311 -2 1087 218 102 82 chr15 88598736 88599287 -12781234 + MER34B LTR ERV1 2 563 -2 577 186 54 23 chr15 88599642 88599771 -12780750 - FLAM_A SINE Alu 0 133 1 1976 123 7 0 chr15 88599774 88600075 -12780446 - AluSx SINE Alu -9 303 1 752 228 23 97 chr15 88600219 88600349 -12780172 - HAL1 LINE L1 -2 2505 2367 2042 130 7 0 chr15 88600349 88600656 -12779865 - AluSx SINE Alu -3 309 1 2098 82 7 7 chr15 88600658 88600952 -12779569 - AluSx SINE Alu -17 295 2 752 228 23 97 chr15 88600952 88601160 -12779361 - HAL1 LINE L1 -141 2366 2189 439 316 14 19 chr15 88601146 88601355 -12779166 + L1ME1 LINE L1 5737 5944 -222 * 1274 143 15 68 chr15 88601432 88601697 -12778824 + AluJo SINE Alu 61 311 -1 268 250 9 60 chr15 88601966 88602082 -12778439 - HAL1 LINE L1 -1193 1314 1205 1120 144 12 0 chr15 88602083 88602256 -12778265 - AluSg/x SINE Alu -4 306 132 2070 112 0 38 chr15 88602256 88602569 -12777952 - AluSx SINE Alu -11 301 1 541 141 85 68 chr15 88602574 88602751 -12777770 - HAL1 LINE L1 -1312 1195 1016 281 314 105 0 chr15 88602767 88602891 -12777630 - HAL1 LINE L1 -2277 230 94 1989 124 0 0 chr15 88602970 88603280 -12777241 + AluSx SINE Alu 1 310 0 1174 208 148 91 chr15 88603546 88603580 -12776941 - MLT1E LTR MaLR -8 585 554 2178 111 0 0 chr15 88603580 88603886 -12776635 + AluSg SINE Alu 1 306 -4 1174 208 148 91 chr15 88603886 88603918 -12776603 - MLT1E LTR MaLR -39 554 525 1775 165 0 13 chr15 88603918 88604234 -12776287 + AluJb SINE Alu 1 312 0 1174 208 148 91 chr15 88604234 88604671 -12775850 - MLT1E LTR MaLR -68 525 1 376 276 17 82 chr15 88604684 88604754 -12775767 - HAL1 LINE L1 -788 1719 1646 2392 63 3 0 chr15 88604754 88605055 -12775466 + AluSp SINE Alu 1 302 -11 376 276 17 82 chr15 88605055 88605154 -12775367 - HAL1 LINE L1 -861 1646 1574 1941 116 0 0 chr15 88605154 88605429 -12775092 + AluSq SINE Alu 39 313 0 376 276 17 82 chr15 88605429 88605551 -12774970 - HAL1 LINE L1 -933 1574 1446 774 139 0 9 chr15 88605569 88605684 -12774837 - FLAM_A SINE Alu -21 121 8 2685 110 62 0 chr15 88605769 88606188 -12774333 - L1MA8 LINE L1 0 6291 5847 293 98 0 0 chr15 88606236 88606277 -12774244 - L1MA8 LINE L1 -488 5846 5806 1842 165 0 3 chr15 88606277 88606677 -12773844 + AluJb SINE Alu 4 402 0 1020 131 92 79 chr15 88606677 88606719 -12773802 - L1MA8 LINE L1 -489 5811 5771 2101 134 0 3 chr15 88606719 88607032 -12773489 - AluSx SINE Alu 0 312 1 1020 131 92 79 chr15 88607032 88607218 -12773303 - L1MA8 LINE L1 -529 5771 5580 1506 162 48 45 chr15 88607221 88607511 -12773010 - AluJo SINE Alu -11 291 1 395 268 19 57 chr15 88607793 88607950 -12772571 + MLT1L LTR MaLR 137 287 -328 565 169 16 32 chr15 88607995 88608119 -12772402 - LTR12 LTR ERV1 -112 602 481 306 237 21 21 chr15 88608120 88608213 -12772308 - LTR30 LTR ERV1 -79 643 551 212 154 0 0 chr15 88608222 88608261 -12772260 + G-rich Low_complexity Low_complexity 1 39 0 1046 115 0 110 chr15 88608261 88608466 -12772055 - LTR12 LTR ERV1 -448 1683 100 277 211 0 0 chr15 88608470 88608522 -12771999 - LTR30 LTR ERV1 -670 52 1 281 346 60 30 chr15 88608522 88608756 -12771765 + MLT1J LTR MaLR 268 508 -3 417 81 0 0 chr15 88610064 88610126 -12770395 + (TG)n Simple_repeat Simple_repeat 1 62 0 1601 170 7 3 chr15 88610177 88610486 -12770035 + AluJb SINE Alu 1 310 0 254 219 31 42 chr15 88610512 88610608 -12769913 + L1ME4a LINE L1 5628 5722 -399 428 294 0 9 chr15 88610744 88610853 -12769668 + HsTC2 DNA Tc2 47 154 -1744 * 1763 187 31 89 chr15 88610851 88610935 -12769586 + HsTC2 DNA Tc2 1234 1321 -577 2313 79 0 7 chr15 88610935 88611240 -12769281 + AluSx SINE Alu 1 303 -9 1763 187 31 89 chr15 88611240 88611674 -12768847 + HsTC2 DNA Tc2 1321 1898 0 2142 101 27 0 chr15 88612021 88612319 -12768202 + AluSx SINE Alu 1 306 -6 415 248 45 53 chr15 88612945 88613078 -12767443 + L1ME4a LINE L1 5712 5843 -278 260 179 95 0 chr15 88613078 88613173 -12767348 + (TTTAA)n Simple_repeat Simple_repeat 1 104 0 1951 130 0 19 chr15 88613173 88613489 -12767032 - AluJb SINE Alu -2 310 1 492 163 0 12 chr15 88613489 88613575 -12766946 - AluJo SINE Alu -171 141 57 247 263 0 13 chr15 88613591 88613667 -12766854 + L1MC4 LINE L1 7524 7598 -444 4040 103 54 76 chr15 88613930 88614666 -12765855 + Tigger2 DNA MER2_type 1999 2718 0 794 182 0 15 chr15 88614682 88614814 -12765707 - FLAM_C SINE Alu -3 130 1 2085 128 0 3 chr15 88614824 88615129 -12765392 - AluSx SINE Alu -8 304 1 3509 147 17 15 chr15 88615130 88615722 -12764799 - L1MB3 LINE L1 -85 6098 5506 2448 63 3 0 chr15 88616103 88616405 -12764116 - AluSp SINE Alu -10 303 1 506 59 15 0 chr15 88616457 88616525 -12763996 - MER41B LTR ERV1 -88 547 479 2214 103 3 0 chr15 88616864 88617164 -12763357 - AluSx SINE Alu -11 301 1 1812 131 0 0 chr15 88618007 88618267 -12762254 + AluSq SINE Alu 1 260 -53 1556 131 8 8 chr15 88618267 88618511 -12762010 + AluJb SINE Alu 44 287 -25 2078 114 3 0 chr15 88618522 88618820 -12761701 + AluSx SINE Alu 1 299 -13 864 150 0 90 chr15 88618840 88619022 -12761499 + FRAM SINE Alu 1 198 -114 482 146 31 0 chr15 88619022 88619118 -12761403 + L1MB3 LINE L1 6085 6183 0 2217 86 0 19 chr15 88619127 88619442 -12761079 + AluY SINE Alu 1 309 -2 25 31 0 0 chr15 88619592 88619624 -12760897 + AT_rich Low_complexity Low_complexity 1 32 0 696 195 43 30 chr15 88619721 88619885 -12760636 - AluJo SINE Alu 0 302 137 2012 130 0 23 chr15 88619917 88620224 -12760297 - AluSx SINE Alu -12 300 1 742 167 23 38 chr15 88620344 88620476 -12760045 - AluJo SINE Alu -170 132 3 702 310 66 38 chr15 88620531 88621028 -12759493 - L1ME4a LINE L1 -224 5897 5387 302 332 49 36 chr15 88621059 88621230 -12759291 - L1ME4a LINE L1 -5 6116 5940 1852 116 24 3 chr15 88621230 88621522 -12758999 + AluSg SINE Alu 1 298 -12 302 332 49 36 chr15 88621522 88621573 -12758948 - L1ME4a LINE L1 -181 5940 5891 629 300 53 52 chr15 88621602 88622031 -12758490 + L2 LINE L2 2806 3293 -20 2120 102 13 0 chr15 88622031 88622334 -12758187 - AluSq SINE Alu -6 307 1 629 300 53 52 chr15 88622334 88622353 -12758168 + L2 LINE L2 3293 3310 -3 577 229 17 111 chr15 88622362 88622618 -12757903 - L1MC4a LINE L1 -345 5826 5676 23 0 0 29 chr15 88622618 88622640 -12757881 + AT_rich Low_complexity Low_complexity 1 23 -10 2093 136 0 0 chr15 88622640 88622948 -12757573 - AluSx SINE Alu -4 308 1 23 0 0 29 chr15 88622948 88622959 -12757562 + AT_rich Low_complexity Low_complexity 23 33 0 1546 168 48 0 chr15 88622959 88623227 -12757294 - AluJo SINE Alu -25 287 7 22 0 0 0 chr15 88623232 88623254 -12757267 + AT_rich Low_complexity Low_complexity 1 22 0 416 173 338 23 chr15 88623308 88623441 -12757080 + AluJo SINE Alu 116 290 -12 2169 114 0 3 chr15 88623441 88623749 -12756772 + AluSx SINE Alu 1 307 -5 270 0 0 0 chr15 88623801 88623831 -12756690 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 469 295 58 0 chr15 88623902 88624041 -12756480 - MERVL LTR ERVL -2922 2074 1928 1871 147 7 7 chr15 88624047 88624347 -12756174 + AluJb SINE Alu 1 300 -12 698 160 16 32 chr15 88624368 88624493 -12756028 + FLAM_C SINE Alu 4 126 -17 668 251 103 66 chr15 88624507 88624589 -12755932 - MERVL LTR ERVL -3066 1930 1853 2027 94 16 26 chr15 88624589 88624896 -12755625 - AluSx SINE Alu -7 305 2 668 251 103 66 chr15 88624896 88625060 -12755461 - MERVL LTR ERVL -3143 1853 1667 2022 130 3 0 chr15 88625060 88625361 -12755160 - AluSx SINE Alu -10 302 1 668 251 103 66 chr15 88625361 88625432 -12755089 - MERVL LTR ERVL -3329 1667 1600 350 242 24 5 chr15 88625669 88625789 -12754732 - MERVL LTR ERVL -3785 1211 1091 1200 193 93 11 chr15 88626042 88626311 -12754210 - AluJo SINE Alu -21 291 1 1121 226 16 98 chr15 88626403 88626680 -12753841 - L1ME3A LINE L1 -208 5962 5664 2300 98 0 0 chr15 88626680 88626987 -12753534 - AluSc SINE Alu -2 307 1 1121 226 16 98 chr15 88626987 88627011 -12753510 - L1ME3A LINE L1 -506 5664 5640 1649 100 0 17 chr15 88627011 88627251 -12753270 - AluSx SINE Alu -22 290 55 1281 211 39 4 chr15 88627254 88627534 -12752987 - AluJb SINE Alu -22 290 1 1121 226 16 98 chr15 88627534 88627656 -12752865 - L1ME3A LINE L1 -532 5638 5569 267 91 0 91 chr15 88627656 88627700 -12752821 + LTR8 LTR ERV1 548 587 -104 819 223 0 23 chr15 88627861 88628036 -12752485 - AluJo SINE Alu -10 302 132 189 0 0 0 chr15 88628119 88628140 -12752381 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 678 208 8 0 chr15 88628140 88628260 -12752261 - AluJo SINE Alu -190 122 2 1479 103 14 31 chr15 88628617 88628840 -12751681 + AluSx SINE Alu 1 219 -93 825 126 0 0 chr15 88628840 88628959 -12751562 + AluSg/x SINE Alu 188 306 -6 3084 241 92 42 chr15 88629132 88629503 -12751018 - MER69 DNA AcHobo -1580 946 595 2181 103 3 6 chr15 88629503 88629814 -12750707 - AluSx SINE Alu -2 310 1 3084 241 92 42 chr15 88629814 88630343 -12750178 - MER69 DNA AcHobo -1931 595 1 884 168 87 12 chr15 88630349 88630366 -12750155 + AluSg/x SINE Alu 118 132 -180 2244 95 3 0 chr15 88630366 88630671 -12749850 + AluSx SINE Alu 1 306 -6 884 168 87 12 chr15 88630671 88630826 -12749695 + AluSg/x SINE Alu 132 303 -9 877 166 80 37 chr15 88631195 88631382 -12749139 + MER3 DNA MER1_type 1 195 -14 282 100 40 0 chr15 88631617 88631667 -12748854 - ORSL DNA AcHobo -43 232 181 806 111 0 0 chr15 88631686 88631794 -12748727 - FLAM_A SINE Alu -17 125 18 567 176 101 44 chr15 88631836 88631877 -12748644 - ORSL DNA AcHobo -95 180 143 1975 113 14 0 chr15 88631877 88632170 -12748351 + AluSx SINE Alu 1 297 -15 189 0 0 0 chr15 88632170 88632191 -12748330 + (TA)n Simple_repeat Simple_repeat 1 21 0 567 176 101 44 chr15 88632191 88632307 -12748214 - ORSL DNA AcHobo -131 144 13 354 23 0 0 chr15 88632307 88632350 -12748171 + (TG)n Simple_repeat Simple_repeat 2 44 0 400 213 248 21 chr15 88632696 88632837 -12747684 - MIR SINE MIR -68 194 22 949 147 86 49 chr15 88633967 88634073 -12746448 + L1MA9 LINE L1 5857 5958 -354 2003 108 28 0 chr15 88634073 88634360 -12746161 + AluSx SINE Alu 1 295 -17 949 147 86 49 chr15 88634360 88634579 -12745942 + L1MA9 LINE L1 5958 6290 -22 211 341 88 0 chr15 88634755 88634846 -12745675 + MIR SINE MIR 37 135 -73 190 279 171 9 chr15 88635076 88635187 -12745334 - MIR SINE MIR -96 166 38 207 133 0 44 chr15 88636391 88636436 -12744085 + (TTCCC)n Simple_repeat Simple_repeat 1 43 0 258 303 131 0 chr15 88636924 88637046 -12743475 - MIR SINE MIR -6 256 119 1953 124 0 3 chr15 88637181 88637490 -12743031 - AluSg SINE Alu 0 308 1 358 200 15 7 chr15 88638270 88638352 -12742169 - MLT1A1 LTR MaLR -1 364 293 801 184 80 31 chr15 88638368 88638531 -12741990 - FAM SINE Alu 0 175 5 1291 181 64 8 chr15 88638536 88638802 -12741719 - MLT1A1 LTR MaLR -55 310 30 2195 105 7 0 chr15 88638828 88639113 -12741408 + AluSx SINE Alu 5 291 -21 919 131 0 0 chr15 88639207 88639344 -12741177 - AluSg/x SINE Alu -1 309 173 244 158 0 0 chr15 88639346 88639384 -12741137 - MLT1A1 LTR MaLR -358 38 1 371 326 168 25 chr15 88639512 88640737 -12739784 - L2 LINE L2 0 3272 1802 235 267 33 92 chr15 88640745 88640869 -12739652 - L2 LINE L2 -1736 1578 1473 2278 108 10 3 chr15 88640869 88641164 -12739357 + AluSx SINE Alu 1 297 -15 235 267 33 92 chr15 88641164 88641279 -12739242 - L2 LINE L2 -1841 1473 1353 494 211 53 0 chr15 88641742 88641837 -12738684 + MIR SINE MIR 53 152 -110 349 247 241 0 chr15 88641863 88642025 -12738496 - MIR SINE MIR -29 233 33 2293 92 36 3 chr15 88643240 88643543 -12736978 - AluSp SINE Alu 0 313 1 759 126 60 7 chr15 88643771 88643922 -12736599 + LTR23 LTR ERV1 147 305 -132 1996 125 3 21 chr15 88643923 88644237 -12736284 + AluSx SINE Alu 1 309 0 700 193 0 0 chr15 88644242 88644356 -12736165 + FLAM_C SINE Alu 13 126 -17 207 0 0 0 chr15 88644356 88644379 -12736142 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 217 264 19 0 chr15 88644837 88644890 -12735631 + CT-rich Low_complexity Low_complexity 3 56 0 207 204 0 0 chr15 88644947 88644991 -12735530 + CT-rich Low_complexity Low_complexity 2 45 0 24 32 0 0 chr15 88645086 88645117 -12735404 + GC_rich Low_complexity Low_complexity 1 31 0 345 154 77 0 chr15 88645799 88645864 -12734657 + MIR SINE MIR 81 150 -112 423 253 60 6 chr15 88646125 88646291 -12734230 + L1MC4 LINE L1 7867 8041 -1 1979 137 22 0 chr15 88646538 88646816 -12733705 - AluSx SINE Alu -14 298 15 1100 152 22 5 chr15 88646891 88647075 -12733446 + AluSx SINE Alu 1 187 -125 263 212 62 62 chr15 88647951 88648064 -12732457 + L2 LINE L2 3198 3310 -3 806 158 0 8 chr15 88648360 88648486 -12732035 + AluJo/FLAM SINE Alu 1 127 -175 2252 109 3 3 chr15 88648486 88648790 -12731731 - AluSx SINE Alu -8 304 1 498 195 56 56 chr15 88648823 88648923 -12731598 - MIR SINE MIR -2 260 159 2452 100 3 0 chr15 88648923 88649233 -12731288 + AluSq SINE Alu 1 311 -2 498 195 56 56 chr15 88649233 88649306 -12731215 - MIR SINE MIR -102 160 88 221 276 130 65 chr15 88649257 88649380 -12731141 + MIR3 SINE MIR 10 140 -68 * 199 208 21 42 chr15 88649398 88649446 -12731075 - MIR SINE MIR -18 244 198 2582 42 3 10 chr15 88649610 88649916 -12730605 + AluY SINE Alu 1 304 -7 335 219 226 51 chr15 88650190 88650327 -12730194 + MER5A DNA MER1_type 26 186 -3 201 275 187 11 chr15 88650352 88650443 -12730078 - MIR SINE MIR -76 132 26 280 276 79 55 chr15 88650598 88650725 -12729796 - MER5A DNA MER1_type -36 153 24 2179 99 14 7 chr15 88650878 88651171 -12729350 - AluSx SINE Alu -17 295 1 569 194 0 37 chr15 88651372 88651506 -12729015 + AluSq/x SINE Alu 2 130 -182 649 190 0 17 chr15 88651662 88651778 -12728743 + FLAM_A SINE Alu 20 133 -9 367 242 58 25 chr15 88651887 88652007 -12728514 + MER5C DNA MER1_type 1 124 -200 281 219 55 14 chr15 88652121 88652194 -12728327 + MER5C DNA MER1_type 249 324 0 1086 172 0 0 chr15 88652403 88652577 -12727944 - FAM SINE Alu -1 174 1 265 272 83 79 chr15 88652643 88652774 -12727747 + MIR SINE MIR 8 143 -119 2139 115 14 0 chr15 88652774 88653086 -12727435 + AluSx SINE Alu 1 316 0 265 272 83 79 chr15 88653086 88653181 -12727340 + MIR SINE MIR 143 236 -26 423 0 0 0 chr15 88653283 88653330 -12727191 + (TG)n Simple_repeat Simple_repeat 2 48 0 568 241 51 19 chr15 88654636 88654794 -12725727 - MER45A DNA AcHobo 0 178 16 254 318 0 12 chr15 88655048 88655133 -12725388 + CT-rich Low_complexity Low_complexity 4 87 0 244 239 321 6 chr15 88655575 88655734 -12724787 + L2 LINE L2 2651 2859 -455 239 235 59 0 chr15 88655985 88656036 -12724485 + MER5B DNA MER1_type 2 55 -123 834 239 177 26 chr15 88657167 88657556 -12722965 - L1MC4 LINE L1 0 8042 7595 306 0 0 0 chr15 88657563 88657597 -12722924 + (TG)n Simple_repeat Simple_repeat 1 34 0 2108 80 28 3 chr15 88657853 88658140 -12722381 + AluSx SINE Alu 2 295 -17 2213 116 0 10 chr15 88658929 88659232 -12721289 - AluSx SINE Alu -12 300 1 1793 161 3 27 chr15 88659526 88659825 -12720696 - AluJo SINE Alu -20 292 1 281 212 84 32 chr15 88659832 88659963 -12720558 - L1ME LINE L1 -299 5822 5685 387 230 90 0 chr15 88659998 88660098 -12720423 - MIR SINE MIR -96 166 58 193 264 0 19 chr15 88660260 88660313 -12720208 + MIR SINE MIR 151 202 -60 2152 109 6 31 chr15 88661074 88661394 -12719127 + AluSx SINE Alu 1 312 0 866 223 56 96 chr15 88661766 88662252 -12718269 + L1ME4a LINE L1 5541 6006 -115 2338 112 0 3 chr15 88662252 88662555 -12717966 + AluSx SINE Alu 1 302 -10 866 223 56 96 chr15 88662555 88662601 -12717920 + L1ME4a LINE L1 6006 6052 -69 982 199 0 0 chr15 88662624 88662864 -12717657 - FRAM SINE Alu 0 240 1 21 0 0 0 chr15 88662881 88662902 -12717619 + AT_rich Low_complexity Low_complexity 1 21 0 658 172 83 0 chr15 88662950 88663095 -12717426 - L1MA10 LINE L1 -15 6319 6163 21 57 0 0 chr15 88663135 88663170 -12717351 + AT_rich Low_complexity Low_complexity 1 35 0 235 315 79 0 chr15 88663206 88663295 -12717226 - L2 LINE L2 -70 3202 3107 210 183 17 117 chr15 88663609 88663669 -12716852 + L2 LINE L2 3208 3261 -11 2481 75 0 0 chr15 88663688 88663982 -12716539 + AluY SINE Alu 12 305 -6 2383 104 0 0 chr15 88664001 88664300 -12716221 + AluSg SINE Alu 1 299 -11 1104 148 56 15 chr15 88664423 88664619 -12715902 - AluJo SINE Alu -24 288 85 208 231 19 19 chr15 88664781 88664833 -12715688 - L2 LINE L2 -1 3271 3220 2344 62 6 52 chr15 88664954 88665279 -12715242 + AluSg SINE Alu 1 310 0 335 261 238 0 chr15 88665368 88665506 -12715015 + MIR SINE MIR 88 259 -3 313 345 36 22 chr15 88665629 88665768 -12714753 + L1M4 LINE L1 2689 2829 -3317 23 0 0 0 chr15 88665810 88665833 -12714688 + AT_rich Low_complexity Low_complexity 1 23 0 1947 157 13 17 chr15 88665863 88666162 -12714359 + AluJb SINE Alu 1 298 -14 1661 133 11 55 chr15 88666295 88666566 -12713955 - AluJb SINE Alu -49 263 5 236 250 33 0 chr15 88666570 88666630 -12713891 + L1MC/D LINE L1 5785 5846 -1962 403 272 69 38 chr15 88666891 88667083 -12713438 - MIR3 SINE MIR -44 218 13 1549 150 92 0 chr15 88667106 88667379 -12713142 - AluJo SINE Alu -14 298 1 2387 107 3 0 chr15 88668817 88669126 -12711395 - AluSx SINE Alu -2 310 1 630 249 171 70 chr15 88669660 88670187 -12710334 - L1ME4a LINE L1 0 6121 5542 182 284 129 35 chr15 88671938 88672054 -12708467 + MIR SINE MIR 18 144 -118 374 325 186 13 chr15 88672212 88672443 -12708078 - L2 LINE L2 -1 3271 3001 2161 103 17 3 chr15 88672456 88672748 -12707773 + AluSx SINE Alu 1 296 -16 2471 89 0 0 chr15 88672748 88673051 -12707470 + AluSg SINE Alu 1 303 -7 203 256 146 43 chr15 88673081 88673245 -12707276 - L2 LINE L2 -416 2898 2718 468 307 126 43 chr15 88673645 88673876 -12706645 - MIR SINE MIR -6 256 7 952 201 0 0 chr15 88674189 88674363 -12706158 + FRAM SINE Alu 1 173 -3 1968 141 17 7 chr15 88674368 88674659 -12705862 + AluJb SINE Alu 1 294 -18 313 252 98 61 chr15 88676031 88676277 -12704244 - L1ME4a LINE L1 -7 6114 5860 381 292 71 55 chr15 88676471 88676899 -12703622 + L1M4 LINE L1 2848 3289 -2857 185 0 40 0 chr15 88676899 88676924 -12703597 + (CAA)n Simple_repeat Simple_repeat 2 27 0 381 292 71 55 chr15 88676924 88677057 -12703464 + L1M4 LINE L1 3289 3418 -2728 285 344 77 26 chr15 88677295 88677722 -12702799 + L1M4 LINE L1 3749 4197 -1949 1377 121 5 0 chr15 88677853 88678043 -12702478 - AluSg/x SINE Alu -2 310 120 372 68 0 17 chr15 88678198 88678257 -12702264 + Alu SINE Alu 245 302 0 706 271 79 29 chr15 88678257 88678534 -12701987 - L1ME4a LINE L1 -2011 5797 5507 301 253 176 0 chr15 88678552 88678643 -12701878 - L1ME4a LINE L1 -2384 5424 5318 2402 93 7 0 chr15 88678659 88678959 -12701562 + AluSp SINE Alu 1 302 -11 306 261 55 64 chr15 88678970 88679188 -12701333 - L1ME4a LINE L1 -843 5303 5088 774 204 0 0 chr15 88679321 88679453 -12701068 - FLAM_A SINE Alu 0 133 2 351 236 135 11 chr15 88679647 88679736 -12700785 - MIR3 SINE MIR -21 187 88 296 345 104 50 chr15 88679811 88680168 -12700353 - L2 LINE L2 0 3272 2897 891 244 63 94 chr15 88680176 88680448 -12700073 + L1MEd LINE L1 836 1084 -5446 2113 126 3 19 chr15 88680448 88680766 -12699755 + AluSq SINE Alu 1 313 0 891 244 63 94 chr15 88680766 88681047 -12699474 + L1MEd LINE L1 1084 1372 -5158 314 168 84 65 chr15 88681096 88681203 -12699318 + L1MEd LINE L1 1337 1445 -5085 2090 79 97 0 chr15 88681280 88681559 -12698962 + AluY SINE Alu 1 306 -5 2361 109 0 0 chr15 88681621 88681925 -12698596 - AluSc SINE Alu -5 304 1 352 268 59 13 chr15 88681930 88682083 -12698438 + HAL1 LINE L1 1504 1663 -844 1041 140 34 6 chr15 88682441 88682619 -12697902 + AluJo SINE Alu 1 183 -129 2466 91 3 0 chr15 88682620 88682927 -12697594 + AluSx SINE Alu 1 308 -4 720 215 0 0 chr15 88682963 88683093 -12697428 + AluJo SINE Alu 166 295 -17 297 246 13 77 chr15 88683173 88683255 -12697266 + L1MEd LINE L1 2453 2539 -4001 1843 144 10 24 chr15 88683255 88683553 -12696968 + AluJb SINE Alu 1 294 -18 297 246 13 77 chr15 88683553 88683673 -12696848 + L1MEd LINE L1 2539 2636 -3904 1849 128 59 14 chr15 88685060 88685348 -12695173 - AluJo SINE Alu -11 301 1 399 214 60 17 chr15 88685372 88685490 -12695031 - L1MCa LINE L1 -1339 6983 1995 315 311 11 11 chr15 88685413 88685503 -12695018 + L1MC4 LINE L1 6614 6703 -1339 * 387 245 0 26 chr15 88686126 88686273 -12694248 + MIR SINE MIR 29 247 -15 204 345 17 78 chr15 88686885 88687001 -12693520 - MIR SINE MIR -77 131 23 388 246 24 0 chr15 88687034 88687130 -12693391 - MER5A DNA MER1_type -87 102 4 272 313 131 33 chr15 88687172 88687400 -12693121 + L2 LINE L2 2994 3200 -72 298 291 301 10 chr15 88687865 88688061 -12692460 + MIR SINE MIR 10 262 0 2512 65 0 13 chr15 88688101 88688409 -12692112 + AluSc SINE Alu 1 304 -5 441 250 80 0 chr15 88688614 88688726 -12691795 - L2 LINE L2 -3 3310 3190 289 275 228 20 chr15 88689123 88689272 -12691249 + MIR3 SINE MIR 8 187 -21 2103 76 0 7 chr15 88690694 88690969 -12689552 + AluSg SINE Alu 22 294 -16 24 32 0 0 chr15 88691790 88691821 -12688700 + GC_rich Low_complexity Low_complexity 1 31 0 279 0 0 0 chr15 88691842 88691873 -12688648 + (TC)n Simple_repeat Simple_repeat 1 31 0 928 181 10 25 chr15 88692268 88692467 -12688054 - AluSx SINE Alu -116 196 1 1767 184 62 24 chr15 88692519 88692752 -12687769 + L1M3 LINE L1 2570 2793 -3353 2059 111 0 7 chr15 88692752 88693041 -12687480 + AluSg SINE Alu 1 287 -23 1767 184 62 24 chr15 88693041 88693259 -12687262 + L1M3 LINE L1 2793 3038 -3108 2096 119 0 22 chr15 88693259 88693578 -12686943 + AluSx SINE Alu 1 312 0 1811 157 23 7 chr15 88693606 88693905 -12686616 + AluSx SINE Alu 6 309 -3 694 168 17 17 chr15 88693944 88694117 -12686404 + GA-rich Low_complexity Low_complexity 2 174 0 226 135 0 0 chr15 88694118 88694155 -12686366 + (GGAGAA)n Simple_repeat Simple_repeat 5 41 0 1780 164 10 6 chr15 88694155 88694466 -12686055 + AluJb SINE Alu 1 312 0 746 185 0 44 chr15 88694469 88694604 -12685917 + FLAM_C SINE Alu 2 130 -3 860 213 17 27 chr15 88694605 88694906 -12685615 + L1M3 LINE L1 2996 3293 -2853 1329 152 115 0 chr15 88694906 88695179 -12685342 + AluJo SINE Alu 13 313 0 1853 188 42 48 chr15 88695191 88695564 -12684957 + L1M3 LINE L1 4905 5279 -889 1648 112 112 4 chr15 88695564 88695831 -12684690 + AluSg SINE Alu 1 296 -14 2109 98 0 3 chr15 88695832 88696147 -12684374 + AluSx SINE Alu 1 314 0 1853 188 42 48 chr15 88696147 88696305 -12684216 + L1M3 LINE L1 5278 5442 -726 2219 100 0 3 chr15 88696305 88696604 -12683917 + AluSq SINE Alu 1 298 -15 347 258 98 30 chr15 88696909 88697041 -12683480 - MIR SINE MIR -3 259 119 196 386 47 6 chr15 88697086 88697257 -12683264 - L2 LINE L2 -469 2845 2668 1668 128 0 8 chr15 88697800 88698049 -12682472 - AluSx SINE Alu -22 290 44 831 172 0 0 chr15 88698205 88698333 -12682188 + FLAM_C SINE Alu 4 131 -2 327 245 187 38 chr15 88698815 88699035 -12681486 - MIR SINE MIR 0 262 3 865 143 8 0 chr15 88699187 88699313 -12681208 + FLAM_C SINE Alu 1 127 -6 56 16 0 0 chr15 88699313 88699376 -12681145 + AT_rich Low_complexity Low_complexity 1 63 0 2077 102 0 33 chr15 88699463 88699796 -12680725 - AluSq SINE Alu 0 313 3 330 339 23 29 chr15 88699801 88699972 -12680549 - MIR SINE MIR -36 226 57 2109 131 0 3 chr15 88700034 88700348 -12680173 - AluSq SINE Alu 0 313 1 653 142 0 44 chr15 88700348 88700450 -12680071 - AluSg/x SINE Alu -9 300 202 2122 95 0 39 chr15 88700780 88701085 -12679436 - AluSx SINE Alu -15 297 5 375 311 50 25 chr15 88701115 88701276 -12679245 - MIR SINE MIR -78 184 20 579 231 130 28 chr15 88701428 88701644 -12678877 - MIR SINE MIR -12 250 13 387 208 9 57 chr15 88702086 88702192 -12678329 - MLT1K LTR MaLR -6 582 482 288 329 75 14 chr15 88702404 88702550 -12677971 - MLT1K LTR MaLR -396 192 38 2053 78 68 7 chr15 88702550 88702843 -12677678 + AluSq SINE Alu 1 311 -2 548 165 9 0 chr15 88702867 88702982 -12677539 + GA-rich Low_complexity Low_complexity 1 116 0 8184 35 77 16 chr15 88703283 88704375 -12676146 + SVA Other Other 1 1158 -228 240 35 0 0 chr15 88704375 88704404 -12676117 + (A)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr15 88704607 88704630 -12675891 + AT_rich Low_complexity Low_complexity 1 23 0 1730 111 12 87 chr15 88704957 88705116 -12675405 + AluSx SINE Alu 1 125 -187 2068 93 4 4 chr15 88705116 88705418 -12675103 + AluSq SINE Alu 7 308 0 1730 111 12 87 chr15 88705418 88705589 -12674932 + AluSx SINE Alu 125 307 -5 1935 101 72 0 chr15 88705754 88706032 -12674489 - AluSx SINE Alu -14 298 1 2137 125 10 0 chr15 88706127 88706432 -12674089 - AluSx SINE Alu -4 308 1 2049 126 0 19 chr15 88706553 88706758 -12673763 - AluSx SINE Alu -9 303 104 2790 101 0 8 chr15 88706758 88707136 -12673385 + THE1C LTR MaLR 1 375 0 2049 126 0 19 chr15 88707136 88707239 -12673282 - AluSx SINE Alu -208 104 1 188 216 0 0 chr15 88707253 88707290 -12673231 - MIR SINE MIR -2 260 224 1492 95 8 156 chr15 88707740 88708011 -12672510 + LTR23 LTR ERV1 1 208 -229 2051 129 0 3 chr15 88708011 88708314 -12672207 - AluSx SINE Alu -1 311 10 1492 95 8 156 chr15 88708314 88708400 -12672121 + LTR23 LTR ERV1 208 305 -132 839 148 14 0 chr15 88708452 88708594 -12671927 + LTR23 LTR ERV1 293 436 -1 2045 115 3 0 chr15 88709006 88709302 -12671219 - AluSx SINE Alu -15 297 1 1300 135 49 122 chr15 88709302 88709571 -12670950 + MER110-int LTR ERV1 2700 2934 -3397 1233 185 99 34 chr15 88709571 88709863 -12670658 - AluJo SINE Alu -1 311 1 1300 135 49 122 chr15 88709863 88709979 -12670542 + MER110-int LTR ERV1 2934 3057 -3274 933 163 7 0 chr15 88709979 88710273 -12670248 - FRAM SINE Alu 0 293 1 898 161 17 72 chr15 88710273 88710509 -12670012 + MER110-int LTR ERV1 3050 3272 -3059 385 277 0 10 chr15 88710546 88710647 -12669874 + MER110-int LTR ERV1 3251 3350 -2981 502 216 88 0 chr15 88710694 88710796 -12669725 + MER110-int LTR ERV1 3354 3464 -2867 597 216 51 80 chr15 88710918 88711013 -12669508 + MER110-int LTR ERV1 1806 1902 -2978 1886 166 7 0 chr15 88711013 88711320 -12669201 - AluJb SINE Alu -1 311 3 597 216 51 80 chr15 88711320 88711664 -12668857 + MER110-int LTR ERV1 1902 2255 -2625 1875 156 10 3 chr15 88711664 88711959 -12668562 - AluJo SINE Alu -10 302 6 597 216 51 80 chr15 88711959 88712002 -12668519 + MER110-int LTR ERV1 2255 2940 -1940 1525 142 68 27 chr15 88712125 88712421 -12668100 + AluJb SINE Alu 1 308 -4 273 250 0 0 chr15 88712433 88712493 -12668028 + MER110-int LTR ERV1 2418 2477 -2170 1747 153 17 3 chr15 88713062 88713357 -12667164 + AluJo SINE Alu 13 311 -1 211 239 0 0 chr15 88713481 88713527 -12666994 + T-rich Low_complexity Low_complexity 1 46 0 235 258 394 13 chr15 88713924 88714079 -12666442 - MIR SINE MIR -33 229 16 2139 118 6 10 chr15 88714193 88714506 -12666015 - AluSx SINE Alu 0 312 1 371 204 43 21 chr15 88714583 88714676 -12665845 + MIR SINE MIR 97 191 -71 607 298 21 11 chr15 88715745 88715933 -12664588 - MIR SINE MIR -17 245 56 312 267 47 0 chr15 88717185 88717271 -12663250 - MIR SINE MIR -70 192 103 2392 68 0 0 chr15 88717574 88717870 -12662651 + AluSx SINE Alu 5 300 -12 2095 110 3 0 chr15 88717970 88718262 -12662259 + AluSx SINE Alu 6 298 -14 255 196 59 32 chr15 88718287 88718382 -12662139 + MIR SINE MIR 47 140 -68 431 291 34 34 chr15 88718442 88718621 -12661900 - MIR3 SINE MIR -26 182 4 359 271 56 0 chr15 88719153 88719260 -12661261 + MIR SINE MIR 52 164 -98 2186 88 0 7 chr15 88719262 88719558 -12660963 + AluSx SINE Alu 1 294 -18 189 0 0 0 chr15 88719562 88719583 -12660938 + (TAAAA)n Simple_repeat Simple_repeat 1 21 0 197 219 0 0 chr15 88719612 88719653 -12660868 + L2 LINE L2 3223 3263 -9 1847 138 31 0 chr15 88719958 88720248 -12660273 - AluJb SINE Alu -8 304 6 211 268 54 0 chr15 88721151 88721207 -12659314 + MIR SINE MIR 116 174 -88 274 296 153 23 chr15 88721860 88722169 -12658352 - L2 LINE L2 -214 3058 2715 2121 103 3 7 chr15 88722449 88722741 -12657780 + AluSx SINE Alu 4 294 -18 2267 80 0 13 chr15 88722741 88723040 -12657481 + AluSp SINE Alu 1 295 -18 349 290 11 0 chr15 88723073 88723166 -12657355 + MIR3 SINE MIR 112 205 -3 1838 127 0 4 chr15 88724027 88724303 -12656218 + AluSx SINE Alu 1 275 -37 324 0 0 0 chr15 88724304 88724340 -12656181 + (TAA)n Simple_repeat Simple_repeat 2 37 0 415 291 10 10 chr15 88724347 88724450 -12656071 - MER5B DNA MER1_type -25 153 51 2091 170 30 40 chr15 88725259 88725307 -12655214 - MLT2C1 LTR ERVL 0 397 350 228 111 0 0 chr15 88725307 88725343 -12655178 + (TA)n Simple_repeat Simple_repeat 1 36 0 2091 170 30 40 chr15 88725343 88725695 -12654826 - MLT2C1 LTR ERVL -47 350 1 286 353 60 0 chr15 88725748 88725881 -12654640 - L2 LINE L2 -238 3034 2894 482 216 0 0 chr15 88725964 88726075 -12654446 + MIR SINE MIR 30 140 -68 1829 145 3 10 chr15 88726882 88727179 -12653342 + AluJo SINE Alu 1 295 -17 2085 117 0 7 chr15 88727183 88727491 -12653030 + AluSx SINE Alu 1 306 -6 1801 155 7 13 chr15 88727777 88728081 -12652440 - AluJb SINE Alu -10 302 1 248 250 0 33 chr15 88728421 88728481 -12652040 - MIR SINE MIR -113 149 92 202 378 0 0 chr15 88728707 88728805 -12651716 + C-rich Low_complexity Low_complexity 4 101 0 234 91 0 0 chr15 88728814 88728847 -12651674 + (TC)n Simple_repeat Simple_repeat 2 34 0 183 156 0 0 chr15 88729422 88729454 -12651067 + (CA)n Simple_repeat Simple_repeat 1 32 0 247 303 56 0 chr15 88730215 88730304 -12650217 - MER94 DNA DNA -39 95 2 242 219 94 0 chr15 88730533 88730597 -12649924 - MIR SINE MIR -145 117 48 270 327 115 0 chr15 88730840 88730944 -12649577 + L2 LINE L2 3157 3272 0 2206 105 0 0 chr15 88731080 88731376 -12649145 - AluSx SINE Alu -12 300 5 324 249 168 22 chr15 88731421 88731580 -12648941 - MIR SINE MIR -48 214 38 741 256 30 0 chr15 88732351 88732515 -12648006 + AluJb SINE Alu 136 304 -8 2242 79 13 10 chr15 88733066 88733369 -12647152 - AluSq SINE Alu -9 304 1 220 283 65 33 chr15 88733423 88733515 -12647006 - MIR3 SINE MIR -52 156 62 1633 179 0 39 chr15 88735400 88735535 -12644986 + AluJb SINE Alu 1 140 -172 2312 102 0 0 chr15 88735535 88735840 -12644681 + AluSq SINE Alu 1 305 -8 1633 179 0 39 chr15 88735840 88736011 -12644510 + AluJb SINE Alu 140 295 -17 183 260 40 0 chr15 88736062 88736112 -12644409 - MIR SINE MIR -102 160 109 957 174 60 24 chr15 88736803 88736970 -12643551 + FAM SINE Alu 1 173 -2 1433 162 119 18 chr15 88736982 88737260 -12643261 + AluSx SINE Alu 1 306 -6 1108 139 6 0 chr15 88737546 88737712 -12642809 + AluJb SINE Alu 129 295 -17 356 274 44 9 chr15 88737712 88737825 -12642696 + MER117 DNA MER1_type 80 196 -1 2289 88 7 0 chr15 88737861 88738158 -12642363 + AluSq SINE Alu 1 299 -14 2247 104 10 0 chr15 88738547 88738854 -12641667 - AluSg SINE Alu 0 310 1 818 151 0 43 chr15 88738854 88738984 -12641537 - FLAM_C SINE Alu -176 126 1 297 342 20 20 chr15 88739169 88739321 -12641200 + MER5A DNA MER1_type 37 188 -1 361 237 62 0 chr15 88739522 88739619 -12640902 + L2 LINE L2 3170 3272 0 2222 121 0 3 chr15 88740587 88740900 -12639621 + AluSx SINE Alu 1 312 0 617 209 163 17 chr15 88741500 88741672 -12638849 - MIR SINE MIR 0 262 66 1729 189 0 3 chr15 88742220 88742521 -12638000 + AluJo SINE Alu 1 300 -12 338 267 240 0 chr15 88742798 88742948 -12637573 + MER5A DNA MER1_type 4 189 0 842 161 18 18 chr15 88742958 88743126 -12637395 - MER5A DNA MER1_type -21 168 1 494 252 45 26 chr15 88743155 88743310 -12637211 - MER5B DNA MER1_type -15 163 6 305 82 14 178 chr15 88743406 88743434 -12637087 + U7 snRNA snRNA 2 12 -51 2250 98 0 20 chr15 88743434 88743740 -12636781 + AluSx SINE Alu 1 300 -12 305 82 14 178 chr15 88743740 88743784 -12636737 + U7 snRNA snRNA 12 62 -1 289 269 15 0 chr15 88744943 88745010 -12635511 - L2 LINE L2 0 3313 3246 220 359 38 0 chr15 88746199 88746330 -12634191 - L2 LINE L2 -235 3037 2902 325 339 6 41 chr15 88747323 88747494 -12633027 + GA-rich Low_complexity Low_complexity 4 168 0 195 100 0 0 chr15 88748740 88748770 -12631751 + (ATTG)n Simple_repeat Simple_repeat 4 33 0 2325 87 6 0 chr15 88749066 88749377 -12631144 + AluSq SINE Alu 1 313 0 492 350 38 33 chr15 88749458 88749698 -12630823 - L2 LINE L2 -8 3264 3024 1572 193 36 16 chr15 88749771 88750077 -12630444 + AluJo SINE Alu 1 312 0 307 330 157 20 chr15 88750117 88750314 -12630207 + HAL1 LINE L1 1911 2134 -373 512 283 17 51 chr15 88750357 88750650 -12629871 + HAL1 LINE L1 2225 2507 0 2403 51 7 3 chr15 88751971 88752266 -12628255 - AluY SINE Alu -15 296 1 417 294 153 41 chr15 88752410 88752493 -12628028 - MLT1L LTR MaLR -7 608 536 928 171 59 0 chr15 88752493 88752645 -12627876 + FRAM SINE Alu 2 162 -4 2436 82 0 9 chr15 88752648 88752964 -12627557 + AluSp SINE Alu 1 313 0 417 294 153 41 chr15 88752964 88753285 -12627236 - MLT1L LTR MaLR -80 535 140 1277 119 90 0 chr15 88753285 88753486 -12627035 + MER20 DNA MER1_type 1 219 0 417 294 153 41 chr15 88753486 88753539 -12626982 - MLT1L LTR MaLR -475 140 94 336 221 0 47 chr15 88753862 88753948 -12626573 + MIR3 SINE MIR 81 162 -46 976 191 0 0 chr15 88757516 88757668 -12622853 - FRAM SINE Alu -14 152 1 2409 93 0 0 chr15 88757837 88758149 -12622372 - AluSx SINE Alu 0 312 1 209 241 81 46 chr15 88760210 88760297 -12620224 + L2 LINE L2 3137 3226 -46 1711 85 0 58 chr15 88761091 88761351 -12619170 - AluSq SINE Alu -3 310 66 2188 128 0 3 chr15 88811704 88812010 -12568511 - AluSx SINE Alu -7 305 1 2275 118 0 0 chr15 88812010 88812315 -12568206 - AluSx SINE Alu -6 306 1 2093 111 4 0 chr15 88812329 88812599 -12567922 - AluSx SINE Alu -41 271 1 859 197 0 0 chr15 88812607 88812754 -12567767 - AluJb SINE Alu -21 291 145 453 97 0 0 chr15 88812759 88812821 -12567700 + AluSp/q SINE Alu 229 290 -23 891 99 46 0 chr15 88812835 88812966 -12567555 + THE1C LTR MaLR 2 138 -237 26 50 0 0 chr15 88813174 88813214 -12567307 + AT_rich Low_complexity Low_complexity 1 40 0 2385 92 0 0 chr15 88813221 88813514 -12567007 + AluSg SINE Alu 1 293 -17 544 273 88 23 chr15 88814109 88814325 -12566196 - MIR SINE MIR 0 262 33 201 132 0 0 chr15 88814583 88814621 -12565900 + (CGGGG)n Simple_repeat Simple_repeat 1 38 0 1924 144 10 7 chr15 88816062 88816360 -12564161 + 7SLRNA srpRNA srpRNA 8 306 -14 255 317 0 0 chr15 88816377 88816459 -12564062 + L1MC/D LINE L1 5768 5849 -1959 1036 164 6 17 chr15 88816469 88816646 -12563875 + FRAM SINE Alu 1 172 -4 241 300 67 40 chr15 88817446 88817530 -12562991 + MER5A DNA MER1_type 33 124 -65 2343 99 0 34 chr15 88817530 88817853 -12562668 - AluSq SINE Alu -1 312 1 241 300 67 40 chr15 88817853 88817918 -12562603 + MER5A DNA MER1_type 124 186 -3 2327 88 24 0 chr15 88818106 88818402 -12562119 + AluSx SINE Alu 1 303 -9 1929 138 9 50 chr15 88820766 88821085 -12559436 + AluSx SINE Alu 3 308 -4 232 331 169 0 chr15 88821138 88821274 -12559247 + MIR SINE MIR 98 256 -6 1563 177 75 0 chr15 88822815 88823097 -12557424 - AluJb SINE Alu -9 303 1 747 203 21 52 chr15 88824809 88825001 -12555520 + L1MA9 LINE L1 6127 6312 0 2353 114 0 0 chr15 88825193 88825501 -12555020 - AluSg SINE Alu -2 308 1 752 228 84 58 chr15 88826369 88826728 -12553793 - LTR56 LTR ERV1 0 445 78 785 118 184 15 chr15 88826741 88826877 -12553644 - AluSg/x SINE Alu -20 290 132 981 76 0 56 chr15 88826877 88827021 -12553500 - AluSg/x SINE Alu -14 298 163 1312 56 6 6 chr15 88827192 88827371 -12553150 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 359 57 38 0 chr15 88827371 88827424 -12553097 + (TTCC)n Simple_repeat Simple_repeat 2 56 0 2010 149 7 0 chr15 88827532 88827840 -12552681 + AluSg SINE Alu 1 310 0 2300 114 13 0 chr15 88827894 88828202 -12552319 - AluSq SINE Alu -1 312 1 479 209 9 0 chr15 88828232 88828347 -12552174 + CT-rich Low_complexity Low_complexity 1 116 0 2101 128 0 7 chr15 88828347 88828636 -12551885 - AluSx SINE Alu -25 287 1 2530 90 0 0 chr15 88828647 88828957 -12551564 - AluSg SINE Alu 0 310 1 2669 40 0 3 chr15 88828965 88829267 -12551254 - AluY SINE Alu -10 301 1 1432 102 5 0 chr15 88829454 88829641 -12550880 + AluSp SINE Alu 116 303 -10 21 0 0 0 chr15 88829728 88829749 -12550772 + AT_rich Low_complexity Low_complexity 1 21 0 2374 89 0 3 chr15 88830052 88830345 -12550176 + AluSg SINE Alu 1 292 -18 444 232 17 44 chr15 88831641 88831822 -12548699 + G-rich Low_complexity Low_complexity 5 180 0 215 307 136 29 chr15 88832815 88832955 -12547566 + MIR SINE MIR 22 176 -86 854 248 34 0 chr15 88833219 88833425 -12547096 + MIR SINE MIR 40 252 -10 310 250 53 130 chr15 88833947 88834155 -12546366 + MER91A DNA MER1_type 1 192 -4 2306 91 7 0 chr15 88835041 88835328 -12545193 - AluY SINE Alu -22 289 1 1890 134 47 30 chr15 88835590 88835889 -12544632 + AluJb SINE Alu 1 304 -8 1112 185 5 0 chr15 88836017 88836201 -12544320 - AluSg/x SINE Alu -17 295 111 1954 121 70 65 chr15 88836203 88836600 -12543921 - LTR18B LTR ERVL 0 614 216 2291 131 0 0 chr15 88836631 88836936 -12543585 + AluSg SINE Alu 1 305 -5 642 263 153 0 chr15 88837122 88837331 -12543190 - MIR SINE MIR -6 256 16 997 161 12 0 chr15 88837576 88837737 -12542784 - FRAM SINE Alu -16 160 1 2336 99 0 3 chr15 88837852 88838144 -12542377 - AluSx SINE Alu -21 291 1 506 234 119 50 chr15 88838194 88838395 -12542126 + MIR SINE MIR 1 215 -47 267 163 20 0 chr15 88838403 88838452 -12542069 + Charlie5 DNA MER1_type 9 58 -2554 718 109 159 22 chr15 88838452 88838590 -12541931 + AluSg/x SINE Alu 153 309 0 327 100 20 0 chr15 88838624 88838674 -12541847 + AluJ/FLAM SINE Alu 7 57 -245 2135 133 0 35 chr15 88838674 88838991 -12541530 + AluJb SINE Alu 1 306 -6 251 196 18 0 chr15 88838994 88839050 -12541471 + Charlie5 DNA MER1_type 2372 2428 -184 1998 147 10 10 chr15 88839050 88839349 -12541172 + AluJb SINE Alu 1 299 -13 601 120 0 0 chr15 88839407 88839499 -12541022 - AluSg/x SINE Alu -10 300 209 1888 131 0 0 chr15 88839499 88839758 -12540763 - AluSx SINE Alu -53 259 1 280 146 0 79 chr15 88839758 88839847 -12540674 + Charlie5 DNA MER1_type 2466 2547 -65 2498 66 3 10 chr15 88839900 88840202 -12540319 + AluSp SINE Alu 1 300 -13 275 128 0 21 chr15 88840218 88840265 -12540256 + Charlie5 DNA MER1_type 2579 2624 0 261 138 0 35 chr15 88840361 88840419 -12540102 - Alu SINE Alu 0 302 247 451 231 56 35 chr15 88840669 88840812 -12539709 - MIR3 SINE MIR -17 191 46 2263 123 0 0 chr15 88840832 88841141 -12539380 - AluSx SINE Alu -3 309 1 2141 128 10 10 chr15 88841245 88841558 -12538963 + AluSq SINE Alu 1 313 0 2510 72 13 0 chr15 88841563 88841870 -12538651 + AluY SINE Alu 1 311 0 302 328 17 8 chr15 88842292 88842411 -12538110 - L2 LINE L2 -15 3257 3138 2460 107 0 0 chr15 88842632 88842940 -12537581 + AluSg SINE Alu 1 308 -2 1972 148 0 16 chr15 88842944 88843249 -12537272 + AluJb SINE Alu 1 300 -12 2268 106 3 0 chr15 88843253 88843554 -12536967 + AluSx SINE Alu 1 302 -10 2314 110 7 7 chr15 88843674 88843984 -12536537 - AluSg SINE Alu 0 310 1 1036 79 0 43 chr15 88843984 88844123 -12536398 - AluSq/x SINE Alu -179 133 1 2274 122 0 3 chr15 88844262 88844573 -12535948 + AluSg SINE Alu 1 310 0 2068 106 46 0 chr15 88844582 88844866 -12535655 + AluSp SINE Alu 1 297 -16 1857 171 3 10 chr15 88845763 88846068 -12534453 + AluJo SINE Alu 1 303 -9 1813 128 12 0 chr15 88846070 88846327 -12534194 + AluSq SINE Alu 1 260 -53 254 136 23 23 chr15 88847612 88847700 -12532821 + (TG)n Simple_repeat Simple_repeat 2 89 0 1034 186 42 16 chr15 88847700 88847893 -12532628 - AluJb SINE Alu -34 278 81 332 298 188 14 chr15 88848345 88848553 -12531968 - MIR SINE MIR -15 247 4 2384 93 0 3 chr15 88849479 88849781 -12530740 - AluSg SINE Alu -9 301 1 1039 273 45 32 chr15 88850657 88851060 -12529461 - MLT1I LTR MaLR 0 409 2 865 141 110 12 chr15 88851137 88851300 -12529221 - Tigger1 DNA MER2_type -1 2417 2239 1252 124 0 0 chr15 88851300 88851469 -12529052 + AluSg/x SINE Alu 127 295 -17 1924 165 3 16 chr15 88851478 88851794 -12528727 - AluJb SINE Alu 0 312 1 2819 158 63 58 chr15 88851794 88852145 -12528376 - Tigger1 DNA MER2_type -1765 653 296 2198 117 13 0 chr15 88852145 88852445 -12528076 + AluSx SINE Alu 1 304 -8 2819 158 63 58 chr15 88852445 88852743 -12527778 - Tigger1 DNA MER2_type -2122 296 1 2169 147 0 0 chr15 88852794 88853100 -12527421 + AluSx SINE Alu 1 306 -6 244 121 0 69 chr15 88853104 88853162 -12527359 + FAM SINE Alu 126 179 0 2279 113 0 0 chr15 88853163 88853456 -12527065 + AluSq SINE Alu 1 293 -20 1360 141 0 0 chr15 88853469 88853661 -12526860 + AluSg/x SINE Alu 118 309 -1 587 191 130 0 chr15 88853673 88853804 -12526717 + AluJb SINE Alu 133 280 -32 1114 24 16 0 chr15 88853804 88853929 -12526592 + AluY SINE Alu 1 127 -184 1188 156 126 0 chr15 88854129 88854328 -12526193 + 7SLRNA srpRNA srpRNA 95 318 -2 22 35 0 0 chr15 88857103 88857132 -12523389 + AT_rich Low_complexity Low_complexity 1 29 0 267 146 0 0 chr15 88859790 88859845 -12520676 + (TA)n Simple_repeat Simple_repeat 2 56 0 220 100 12 50 chr15 88859861 88859941 -12520580 + (TTA)n Simple_repeat Simple_repeat 3 79 0 204 164 0 60 chr15 88859948 88860015 -12520506 + (TTTA)n Simple_repeat Simple_repeat 4 66 0 230 180 16 0 chr15 88860067 88860128 -12520393 + (TA)n Simple_repeat Simple_repeat 2 63 0 366 262 152 6 chr15 88860634 88860798 -12519723 + MER112 DNA MER1_type 67 254 -6 261 338 27 27 chr15 88861231 88861375 -12519146 + MIR SINE MIR 9 151 -63 469 219 77 31 chr15 88861394 88861590 -12518931 - THE1C LTR MaLR -98 277 73 1697 135 8 0 chr15 88861595 88861839 -12518682 - AluSx SINE Alu -66 246 1 3168 162 5 0 chr15 88861839 88862536 -12517985 - L1M1 LINE L1 -743 5403 4786 826 98 8 0 chr15 88862636 88862758 -12517763 + THE1C LTR MaLR 250 372 -3 315 0 0 0 chr15 88862758 88862793 -12517728 + (CA)n Simple_repeat Simple_repeat 2 36 0 397 289 66 57 chr15 88862913 88863124 -12517397 - L1ME4a LINE L1 -293 5828 5616 209 32 0 32 chr15 88863140 88863171 -12517350 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 263 204 19 19 chr15 88863173 88863227 -12517294 - FLAM SINE Alu -14 119 66 579 174 52 0 chr15 88863673 88863788 -12516733 + L1MB2 LINE L1 6015 6135 -36 2255 113 0 0 chr15 88863788 88864081 -12516440 - AluSx SINE Alu -19 293 1 514 226 10 0 chr15 88864194 88864296 -12516225 - AluSc SINE Alu -76 233 131 472 158 73 78 chr15 88864339 88864508 -12516013 + L1M3 LINE L1 5272 5441 -737 2250 103 0 40 chr15 88864509 88864830 -12515691 + AluSc SINE Alu 1 308 -1 2366 98 0 7 chr15 88864842 88865147 -12515374 + AluSg SINE Alu 3 305 -5 2393 80 0 3 chr15 88865178 88865477 -12515044 - AluY SINE Alu -13 298 1 2276 102 7 0 chr15 88865653 88865946 -12514575 - AluSp SINE Alu -18 295 1 1920 119 0 15 chr15 88866148 88866416 -12514105 - AluSc SINE Alu -16 293 30 720 139 147 8 chr15 88866639 88866768 -12513753 - FRAM SINE Alu -19 147 1 929 94 0 0 chr15 88866797 88866914 -12513607 - AluSg/x SINE Alu -8 302 186 875 83 9 0 chr15 88866914 88867023 -12513498 - AluSc SINE Alu -194 115 6 742 163 7 7 chr15 88867231 88867366 -12513155 + AluJ SINE Alu 2 136 -176 1055 180 0 37 chr15 88867407 88867596 -12512925 + AluJ SINE Alu 131 312 0 541 191 46 53 chr15 88867729 88867860 -12512661 + FLAM_A SINE Alu 13 142 0 21 0 0 0 chr15 88867860 88867881 -12512640 + AT_rich Low_complexity Low_complexity 1 21 0 1809 152 0 0 chr15 88867890 88868166 -12512355 + AluJb SINE Alu 1 276 -36 384 222 222 28 chr15 88868191 88868335 -12512186 + L1ME4a LINE L1 5610 5781 -340 183 42 0 0 chr15 88868437 88868461 -12512060 + (A)n Simple_repeat Simple_repeat 1 24 0 227 178 44 111 chr15 88868541 88868630 -12511891 + L1ME4a LINE L1 5975 6054 -67 1904 174 0 7 chr15 88868630 88868934 -12511587 - AluJb SINE Alu 0 312 11 227 178 44 111 chr15 88868934 88868979 -12511542 + L1ME4a LINE L1 6054 6100 -21 1673 177 3 20 chr15 88869021 88869320 -12511201 - AluJb SINE Alu -18 294 1 184 111 0 0 chr15 88869420 88869447 -12511074 + MIR SINE MIR 83 109 -99 307 270 24 0 chr15 88869454 88869550 -12510971 - MIR SINE MIR -62 146 57 2283 70 29 41 chr15 88869585 88869900 -12510621 - AluSq SINE Alu 0 313 3 2402 78 0 0 chr15 88869905 88870199 -12510322 - AluSx SINE Alu -18 294 1 194 206 0 0 chr15 88870200 88870234 -12510287 - MIR SINE MIR -138 70 37 2182 101 0 0 chr15 88870825 88871102 -12509419 - AluSc SINE Alu -32 277 1 209 254 0 0 chr15 88871232 88871287 -12509234 + G-rich Low_complexity Low_complexity 5 59 0 1202 105 0 22 chr15 88871765 88871946 -12508575 + FRAM SINE Alu 1 169 -7 1922 107 0 4 chr15 88872647 88872935 -12507586 - AluSx SINE Alu 0 312 30 2472 34 10 3 chr15 88873821 88874112 -12506409 - AluY SINE Alu -13 298 6 784 193 29 0 chr15 88874141 88874281 -12506240 + AluJo SINE Alu 2 145 -167 2318 75 0 3 chr15 88874940 88875258 -12505263 + AluSq SINE Alu 2 318 0 906 146 7 7 chr15 88875577 88875714 -12504807 + AluJo SINE Alu 120 256 -56 2100 127 0 13 chr15 88876245 88876544 -12503977 + AluJb SINE Alu 9 303 -9 196 392 25 13 chr15 88877236 88877315 -12503206 + MIR SINE MIR 20 99 -109 205 194 0 0 chr15 88877493 88877529 -12502992 + MIR SINE MIR 157 192 -70 308 212 141 12 chr15 88878486 88878571 -12501950 - L1ME4a LINE L1 -6 6115 6020 486 255 142 45 chr15 88878735 88878832 -12501689 - L1ME4a LINE L1 -223 5898 5812 231 36 0 0 chr15 88878832 88878860 -12501661 + (CACAT)n Simple_repeat Simple_repeat 5 32 0 486 255 142 45 chr15 88878860 88879054 -12501467 - L1ME4a LINE L1 -309 5812 5565 2664 52 0 0 chr15 88879054 88879362 -12501159 - AluY SINE Alu -3 308 1 486 255 142 45 chr15 88879362 88879422 -12501099 - L1ME4a LINE L1 -556 5565 5512 358 249 146 30 chr15 88879707 88879872 -12500649 + MIR3 SINE MIR 3 186 -22 261 294 108 29 chr15 88880006 88880108 -12500413 + MIR SINE MIR 106 215 -47 1951 148 3 0 chr15 88880127 88880442 -12500079 + AluSx SINE Alu 1 316 0 247 192 27 27 chr15 88880770 88880843 -12499678 + (CATA)n Simple_repeat Simple_repeat 4 76 0 2184 113 0 10 chr15 88881351 88881652 -12498869 + AluSg SINE Alu 1 298 -12 569 298 111 20 chr15 88882031 88882229 -12498292 - MIR SINE MIR -46 216 1 1041 158 4 10 chr15 88883939 88884270 -12496251 - AluJb SINE Alu -4 308 14 2257 108 6 13 chr15 88884291 88884605 -12495916 - AluSx SINE Alu 0 312 1 1482 178 0 0 chr15 88885248 88885478 -12495043 - AluJo SINE Alu -55 257 28 1899 141 47 3 chr15 88885499 88885798 -12494723 - AluJo SINE Alu 0 312 1 733 167 24 0 chr15 88885802 88885928 -12494593 - AluSg/x SINE Alu -12 297 169 2136 104 24 0 chr15 88886402 88886689 -12493832 + AluSx SINE Alu 1 294 -18 2430 86 7 0 chr15 88887053 88887354 -12493167 + AluSg SINE Alu 1 303 -7 2368 95 3 0 chr15 88887850 88888155 -12492366 + AluSx SINE Alu 1 306 -6 209 326 95 68 chr15 88888171 88888361 -12492160 - L2 LINE L2 -502 2812 2618 2400 102 0 9 chr15 88888362 88888677 -12491844 + AluSx SINE Alu 1 312 0 282 29 0 0 chr15 88889405 88889440 -12491081 + (TG)n Simple_repeat Simple_repeat 2 36 0 474 133 20 41 chr15 88889837 88889935 -12490586 + AluS SINE Alu 1 96 -217 1658 140 12 67 chr15 88889966 88890184 -12490337 - MLT1B LTR MaLR -6 384 188 2175 106 10 0 chr15 88890184 88890476 -12490045 - AluSq SINE Alu -18 295 1 1658 140 12 67 chr15 88890476 88890586 -12489935 - MLT1B LTR MaLR -202 188 74 1719 178 9 29 chr15 88890755 88891070 -12489451 - AluJo SINE Alu -3 309 1 23 33 0 0 chr15 88891375 88891405 -12489116 + AT_rich Low_complexity Low_complexity 1 30 0 2347 102 0 3 chr15 88891476 88891781 -12488740 + AluSg SINE Alu 1 304 -6 233 287 15 29 chr15 88891822 88891958 -12488563 + L1ME4a LINE L1 5988 6121 0 340 317 253 9 chr15 88892248 88892726 -12487795 + L3 LINE CR1 16 622 -955 1261 213 7 36 chr15 88892726 88892859 -12487662 - AluJb SINE Alu -41 271 149 2454 74 0 3 chr15 88892859 88893156 -12487365 - AluY SINE Alu -15 296 1 1261 213 7 36 chr15 88893156 88893299 -12487222 - AluJb SINE Alu -163 149 3 759 178 31 0 chr15 88893303 88893456 -12487065 - FLAM_C SINE Alu 0 157 1 2256 99 7 13 chr15 88895175 88895479 -12485042 - AluSx SINE Alu -10 302 1 302 328 17 8 chr15 88895687 88895806 -12484715 + L2 LINE L2 3138 3257 -15 2356 83 3 7 chr15 88896983 88897284 -12483237 + AluSp SINE Alu 1 300 -13 797 206 35 4 chr15 88897447 88897661 -12482860 + L1MB7 LINE L1 5771 5990 -221 32 26 0 0 chr15 88897710 88897749 -12482772 + AT_rich Low_complexity Low_complexity 1 39 0 2459 99 0 0 chr15 88897785 88898088 -12482433 + AluSg SINE Alu 1 303 -7 322 270 173 44 chr15 88898380 88898682 -12481839 - L1ME LINE L1 -464 5657 5317 1708 169 7 4 chr15 88898791 88899064 -12481457 - AluJo SINE Alu -38 274 1 800 213 7 7 chr15 88899808 88899963 -12480558 - MER5A DNA MER1_type -33 156 2 2310 119 0 0 chr15 88900287 88900597 -12479924 - AluSx SINE Alu -2 310 1 227 218 0 18 chr15 88900912 88900967 -12479554 + (CATA)n Simple_repeat Simple_repeat 2 55 0 297 238 0 38 chr15 88901236 88901341 -12479180 + C-rich Low_complexity Low_complexity 1 101 0 304 332 0 0 chr15 88901368 88901603 -12478918 + C-rich Low_complexity Low_complexity 1 235 0 12296 183 18 5 chr15 88901704 88902215 -12478306 - L1 LINE L1 -1367 4779 4276 369 0 0 0 chr15 88902215 88902256 -12478265 + (TG)n Simple_repeat Simple_repeat 2 42 0 12296 183 18 5 chr15 88902256 88903447 -12477074 - L1 LINE L1 -1870 4276 3032 2483 73 7 0 chr15 88903447 88903749 -12476772 - AluSp SINE Alu -9 304 1 12296 183 18 5 chr15 88903749 88904598 -12475923 - L1 LINE L1 -3114 3032 2195 928 123 7 27 chr15 88904964 88905110 -12475411 + FLAM_C SINE Alu 1 143 0 2364 102 0 13 chr15 88905112 88905246 -12475275 + AluSg SINE Alu 1 135 -175 2622 65 0 7 chr15 88905246 88905556 -12474965 + AluY SINE Alu 1 308 -3 2364 102 0 13 chr15 88905556 88905726 -12474795 + AluSg SINE Alu 135 301 -9 1937 153 7 0 chr15 88907026 88907314 -12473207 - AluJo SINE Alu -14 298 9 1506 116 174 23 chr15 88907329 88907587 -12472934 - AluSx SINE Alu -5 297 1 234 91 0 0 chr15 88907618 88907651 -12472870 + (TA)n Simple_repeat Simple_repeat 1 33 0 355 274 39 58 chr15 88907771 88907979 -12472542 + L1MC4a LINE L1 5638 5841 -1967 198 0 0 0 chr15 88907979 88908001 -12472520 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1841 88 104 19 chr15 88908006 88908266 -12472255 - AluSx SINE Alu -30 282 1 1126 142 58 5 chr15 88908295 88908500 -12472021 - MER39B LTR ERV1 0 653 438 2382 101 0 7 chr15 88908500 88908807 -12471714 + AluSx SINE Alu 1 305 -7 528 135 29 0 chr15 88908807 88908911 -12471610 + L1M1 LINE L1 5359 5465 -835 1445 119 0 0 chr15 88908920 88909149 -12471372 + AluSg/x SINE Alu 96 324 0 253 116 23 0 chr15 88909159 88909202 -12471319 - MER39B LTR ERV1 -214 439 396 332 240 173 19 chr15 88909336 88909440 -12471081 + L1ME4a LINE L1 5991 6110 -11 1798 112 12 0 chr15 88909499 88909741 -12470780 - AluSx SINE Alu -19 293 49 1979 140 7 0 chr15 88909742 88910027 -12470494 + AluSx SINE Alu 8 294 -18 2012 135 0 10 chr15 88910042 88910330 -12470191 + AluSx SINE Alu 17 301 -11 2173 123 7 0 chr15 88910340 88910633 -12469888 + AluSx SINE Alu 1 295 -17 289 214 214 29 chr15 88910637 88910740 -12469781 - MER5B DNA MER1_type -55 123 2 1830 157 0 14 chr15 88911107 88911408 -12469113 - AluJo SINE Alu 0 301 5 1032 103 0 85 chr15 88911696 88911889 -12468632 - AluSg/x SINE Alu 0 312 134 223 294 127 42 chr15 88911923 88912277 -12468244 - L2 LINE L2 -2237 1077 694 2187 113 3 10 chr15 88912569 88912870 -12467651 + AluSq SINE Alu 14 312 -1 1740 171 21 6 chr15 88912871 88913211 -12467310 + L1MD2 LINE L1 5433 5777 -582 870 199 44 98 chr15 88913214 88913531 -12466990 + AluJo SINE Alu 2 301 -1 1234 236 99 43 chr15 88913537 88913981 -12466540 + L1MD2 LINE L1 5878 6346 -13 2321 87 0 19 chr15 88913985 88914296 -12466225 + AluSc SINE Alu 1 305 -4 217 163 0 41 chr15 88914655 88914704 -12465817 + GA-rich Low_complexity Low_complexity 1 47 0 24 67 0 0 chr15 88914864 88914909 -12465612 + AT_rich Low_complexity Low_complexity 1 45 0 435 200 127 73 chr15 88915195 88915364 -12465157 + L1ME4a LINE L1 5653 5837 -284 1866 94 0 125 chr15 88915364 88915728 -12464793 - AluSg SINE Alu 0 325 2 435 200 127 73 chr15 88915728 88915762 -12464759 + L1ME4a LINE L1 5837 5868 -253 656 93 12 0 chr15 88915763 88915849 -12464672 + AluS SINE Alu 2 88 -224 1095 101 6 11 chr15 88915984 88916163 -12464358 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 205 238 24 0 chr15 88916862 88916904 -12463617 - L2 LINE L2 -11 3261 3219 207 0 0 0 chr15 88916946 88916969 -12463552 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1791 137 33 4 chr15 88916970 88917240 -12463281 - AluSx SINE Alu -33 279 2 225 336 43 21 chr15 88917255 88917395 -12463126 + L2 LINE L2 2918 3060 -212 379 304 29 0 chr15 88917397 88917499 -12463022 + L2 LINE L2 3166 3270 -2 251 266 145 65 chr15 88917652 88917866 -12462655 - MLT1K LTR MaLR -63 525 295 1957 132 10 42 chr15 88917889 88918200 -12462321 - AluJo SINE Alu -11 301 1 2144 120 0 43 chr15 88918202 88918528 -12461993 - AluSx SINE Alu 0 312 1 338 238 93 66 chr15 88918890 88919041 -12461480 - MIR SINE MIR -85 177 23 224 247 247 0 chr15 88919106 88919179 -12461342 - MIR SINE MIR -152 110 20 476 250 10 0 chr15 88919186 88919290 -12461231 + MIR SINE MIR 96 200 -62 254 316 59 32 chr15 88919786 88919973 -12460548 + MIR3 SINE MIR 1 192 -16 2198 111 14 0 chr15 88920011 88920300 -12460221 - AluSx SINE Alu -19 293 1 763 250 102 62 chr15 88920317 88920692 -12459829 + L2 LINE L2 2676 3158 -155 2251 110 0 7 chr15 88920692 88920992 -12459529 - AluSg SINE Alu -6 304 7 763 250 102 62 chr15 88920992 88921129 -12459392 + L2 LINE L2 3158 3288 -25 410 298 11 68 chr15 88921275 88921466 -12459055 - MIR SINE MIR -50 212 33 316 218 119 30 chr15 88921796 88921897 -12458624 - MIR3 SINE MIR -85 123 14 2415 92 0 10 chr15 88922018 88922322 -12458199 + AluSx SINE Alu 1 301 -11 2070 153 3 0 chr15 88922337 88922637 -12457884 + AluJb SINE Alu 1 301 -11 1043 167 0 0 chr15 88922648 88922810 -12457711 + AluJb SINE Alu 145 306 -6 363 264 84 7 chr15 88922961 88923116 -12457405 + L1ME4a LINE L1 5947 6113 -8 2182 137 0 7 chr15 88923118 88923425 -12457096 - AluSq SINE Alu -8 305 1 861 239 0 0 chr15 88923475 88923638 -12456883 + FAM SINE Alu 1 163 -12 2130 137 3 0 chr15 88923957 88924257 -12456264 - AluSx SINE Alu -11 301 1 589 261 62 24 chr15 88924606 88924817 -12455704 + MIR SINE MIR 13 231 -31 259 282 76 37 chr15 88926696 88926829 -12453692 - MIR SINE MIR -62 146 12 672 247 55 50 chr15 88927062 88927153 -12453368 + Charlie8 DNA MER1_type 1 90 -251 2372 104 0 3 chr15 88927153 88927460 -12453061 + AluSq SINE Alu 1 306 -7 672 247 55 50 chr15 88927460 88927587 -12452934 + Charlie8 DNA MER1_type 90 220 -121 218 364 0 26 chr15 88927779 88927856 -12452665 - MIR SINE MIR -107 101 27 1597 140 21 0 chr15 88927918 88928153 -12452368 - AluJb SINE Alu -1 311 72 214 345 118 8 chr15 88928322 88928441 -12452080 - L2 LINE L2 0 3272 3141 2076 95 9 63 chr15 88928451 88928767 -12451754 + AluSx SINE Alu 1 299 -13 337 299 123 7 chr15 88928866 88929020 -12451501 - L2 LINE L2 -183 3089 2918 343 316 164 13 chr15 88929107 88929338 -12451183 - L2 LINE L2 -555 2759 2494 235 167 74 0 chr15 88929774 88929828 -12450693 + MIR SINE MIR 175 232 -30 216 0 0 0 chr15 88931823 88931847 -12448674 + (CA)n Simple_repeat Simple_repeat 2 25 0 682 241 17 23 chr15 88932305 88932479 -12448042 - MIR SINE MIR -56 206 34 2166 87 56 7 chr15 88933241 88933528 -12446993 + AluSq SINE Alu 1 301 -12 2439 77 17 0 chr15 88933538 88933836 -12446685 + AluSp SINE Alu 2 304 -9 335 312 139 37 chr15 88934458 88934673 -12445848 - L1ME4a LINE L1 -45 6076 5840 2237 119 0 0 chr15 88934713 88935008 -12445513 + AluSx SINE Alu 3 297 -15 323 284 50 108 chr15 88935008 88935169 -12445352 - HAL1 LINE L1 -5 2502 2356 2155 86 75 0 chr15 88935169 88935449 -12445072 - AluSp SINE Alu -12 301 1 323 284 50 108 chr15 88935449 88935509 -12445012 - HAL1 LINE L1 -151 2356 2294 2119 96 0 0 chr15 88935780 88936040 -12444481 + AluSx SINE Alu 38 297 -15 372 269 21 43 chr15 88936256 88936433 -12444088 - L1ME4a LINE L1 -288 5833 5662 630 289 40 15 chr15 88937110 88937311 -12443210 + MIR SINE MIR 9 214 -48 230 313 24 12 chr15 88937602 88937685 -12442836 - L2 LINE L2 0 3272 3189 2009 100 0 94 chr15 88937687 88938007 -12442514 + AluSg SINE Alu 1 290 -20 304 281 31 10 chr15 88938048 88938144 -12442377 - L2 LINE L2 -250 3063 2966 1150 236 188 18 chr15 88938144 88938601 -12441920 - L2 LINE L2 -529 2785 2251 207 296 70 87 chr15 88939445 88939537 -12440984 + MIR SINE MIR 14 103 -159 2620 48 0 6 chr15 88939537 88939849 -12440672 - AluY SINE Alu -1 310 1 207 296 70 87 chr15 88939849 88939928 -12440593 + MIR SINE MIR 103 182 -80 207 295 16 16 chr15 88940522 88940583 -12439938 - L2 LINE L2 0 3313 3253 689 266 58 54 chr15 88940595 88940666 -12439855 + L3 LINE CR1 394 463 -1114 2100 113 3 35 chr15 88940666 88940977 -12439544 - AluSq SINE Alu -12 301 1 689 266 58 54 chr15 88940977 88941074 -12439447 + L3 LINE CR1 463 566 -1011 2339 97 3 3 chr15 88941074 88941374 -12439147 + AluSq SINE Alu 1 300 -13 689 266 58 54 chr15 88941374 88941445 -12439076 + L3 LINE CR1 566 635 -942 339 142 0 23 chr15 88941475 88941540 -12438981 - Alu SINE Alu -250 50 2 2202 258 102 51 chr15 88941558 88941925 -12438596 - L1MC4 LINE L1 -33 8009 7662 1824 150 28 0 chr15 88941925 88942211 -12438310 - AluJb SINE Alu -13 299 6 2202 258 102 51 chr15 88942211 88942424 -12438097 - L1MC4 LINE L1 -380 7662 7461 1958 174 0 0 chr15 88942424 88942734 -12437787 - AluJb SINE Alu -2 310 1 2404 70 3 29 chr15 88942736 88943052 -12437469 - AluY SINE Alu -3 308 1 2202 258 102 51 chr15 88943052 88943312 -12437209 - L1MC4 LINE L1 -581 7461 7216 2410 70 7 10 chr15 88943312 88943611 -12436910 - AluSc SINE Alu -11 298 1 2202 258 102 51 chr15 88943611 88943929 -12436592 - L1MC4 LINE L1 -826 7216 6781 2101 141 0 10 chr15 88943929 88944235 -12436286 + AluJb SINE Alu 1 303 -9 2202 258 102 51 chr15 88944235 88944262 -12436259 - L1MC4 LINE L1 -1261 6781 6757 2610 41 0 0 chr15 88944267 88944561 -12435960 - AluY SINE Alu -17 294 1 505 292 32 0 chr15 88944570 88944724 -12435797 + L3 LINE CR1 641 799 -778 31 0 0 0 chr15 88944724 88944755 -12435766 + AT_rich Low_complexity Low_complexity 1 31 0 2327 52 42 11 chr15 88944755 88945041 -12435480 - AluY SINE Alu -16 295 1 1748 222 154 51 chr15 88945138 88945698 -12434823 - L2 LINE L2 0 3313 2812 2260 100 0 20 chr15 88945698 88945997 -12434524 - AluSx SINE Alu -19 293 1 1748 222 154 51 chr15 88945997 88946368 -12434153 - L2 LINE L2 -501 2812 2282 2242 113 0 3 chr15 88946368 88946661 -12433860 + AluSg SINE Alu 1 292 -18 1748 222 154 51 chr15 88946661 88946754 -12433767 - L2 LINE L2 -1031 2282 2200 377 307 102 6 chr15 88946751 88946927 -12433594 + L3 LINE CR1 992 1184 -393 * 669 122 98 16 chr15 88948258 88948381 -12432140 - FLAM_C SINE Alu 0 133 1 1718 172 7 17 chr15 88948697 88948999 -12431522 - AluJb SINE Alu -13 299 1 21 36 0 0 chr15 88949142 88949170 -12431351 + AT_rich Low_complexity Low_complexity 1 28 0 748 167 0 8 chr15 88949176 88949308 -12431213 - FLAM_C SINE Alu -2 131 1 737 284 21 21 chr15 88949316 88949559 -12430962 - L1MC/D LINE L1 -2036 5772 5530 185 65 32 0 chr15 88949661 88949692 -12430829 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2121 103 7 0 chr15 88949696 88949969 -12430552 - AluSx SINE Alu -37 275 1 276 364 0 8 chr15 88950312 88950430 -12430091 + L2 LINE L2 1855 1971 -1343 21 0 0 0 chr15 88950447 88950468 -12430053 + AT_rich Low_complexity Low_complexity 1 21 0 719 217 0 0 chr15 88950468 88950597 -12429924 - FLAM_C SINE Alu -14 129 1 1982 123 6 75 chr15 88950653 88950987 -12429534 - AluSx SINE Alu -1 311 1 576 108 0 0 chr15 88950996 88951089 -12429432 - L1PA8 LINE L1 0 6172 6080 651 361 97 27 chr15 88951089 88951730 -12428791 + L2 LINE L2 1993 2696 -618 724 105 81 16 chr15 88951730 88951854 -12428667 - FLAM_C SINE Alu 0 133 2 651 361 97 27 chr15 88951854 88951965 -12428556 + L2 LINE L2 2696 2798 -516 926 169 180 52 chr15 88952496 88952763 -12427758 - AluSx SINE Alu -1 301 1 838 181 13 13 chr15 88954197 88954352 -12426169 + FRAM SINE Alu 1 155 -11 2245 115 0 0 chr15 88956470 88956766 -12423755 + AluSx SINE Alu 1 296 -16 2429 78 3 0 chr15 88956903 88957199 -12423322 - AluY SINE Alu -14 297 1 992 180 39 0 chr15 88957926 88958104 -12422417 + AluSg/x SINE Alu 121 305 -7 573 91 0 0 chr15 88958299 88958376 -12422145 + FRAM SINE Alu 21 97 -79 413 296 59 59 chr15 88958377 88958546 -12421975 - L1ME LINE L1 -352 5769 5601 2407 90 0 3 chr15 88958671 88958971 -12421550 - AluSg SINE Alu -11 299 1 1728 171 33 3 chr15 88958996 88959295 -12421226 - AluJo SINE Alu -4 308 1 581 203 49 0 chr15 88959296 88959419 -12421102 - MER21B LTR ERV1 -53 810 682 3381 109 6 10 chr15 88959456 88959969 -12420552 + MER9 LTR ERVK 1 511 0 388 205 81 25 chr15 88959969 88960117 -12420404 - MER21B LTR ERV1 -436 495 257 1866 150 31 3 chr15 88960128 88960415 -12420106 - AluSx SINE Alu -17 295 1 438 187 115 86 chr15 88960451 88960590 -12419931 + MER69A DNA AcHobo 27 169 -8 784 166 103 49 chr15 88961063 88961450 -12419071 - LTR7 LTR ERV1 0 450 1 3358 110 11 40 chr15 88961450 88962024 -12418497 - HERVH LTR ERV1 0 7713 7157 2262 176 5 0 chr15 88962017 88962442 -12418079 - HERVH LTR ERV1 -1697 6016 5590 * 4089 115 8 7 chr15 88962433 88963043 -12417478 - HERVH LTR ERV1 -2564 5149 4539 520 186 0 10 chr15 88963034 88963131 -12417390 - HERVH LTR ERV1 -4478 3235 3140 * 13501 120 11 40 chr15 88963125 88965875 -12414646 - HERVH LTR ERV1 -4726 2987 1 1124 200 170 30 chr15 88965875 88966070 -12414451 - LTR7 LTR ERV1 0 450 284 2580 71 0 0 chr15 88966070 88966378 -12414143 - AluY SINE Alu -3 308 1 1124 200 170 30 chr15 88966378 88966577 -12413944 - LTR7 LTR ERV1 -166 284 1 254 204 61 0 chr15 88966590 88966639 -12413882 - MER2 DNA MER2_type -11 334 283 746 157 0 0 chr15 88966650 88966765 -12413756 + AluJo SINE Alu 1 115 -187 294 159 0 32 chr15 88966765 88966828 -12413693 + AluJo SINE Alu 92 152 -150 1751 76 0 46 chr15 88966933 88967170 -12413351 - AluY SINE Alu -85 226 1 1803 164 3 39 chr15 88967622 88967788 -12412733 - AluJo SINE Alu -12 300 149 2315 105 10 0 chr15 88967788 88968084 -12412437 - AluSp SINE Alu -14 299 1 1803 164 3 39 chr15 88968084 88968228 -12412293 - AluJo SINE Alu -163 149 1 2168 93 25 0 chr15 88968468 88968771 -12411750 + AluSq SINE Alu 1 310 0 706 136 5 158 chr15 88969775 88969959 -12410562 + AluSg/x SINE Alu 137 292 -20 2399 104 0 0 chr15 88969959 88970257 -12410264 + AluSg SINE Alu 1 298 -12 1705 147 22 60 chr15 88970298 88970612 -12409909 + AluJb SINE Alu 1 302 -10 376 259 9 19 chr15 88970625 88970733 -12409788 - MIR SINE MIR 0 262 156 830 211 48 66 chr15 88972193 88972292 -12408229 + MIR SINE MIR 36 135 -127 925 123 0 18 chr15 88972292 88972455 -12408066 + (TTTC)n Simple_repeat Simple_repeat 1 160 0 2170 101 0 0 chr15 88972455 88972732 -12407789 - AluSg1 SINE Alu -32 277 1 830 211 48 66 chr15 88972732 88972859 -12407662 + MIR SINE MIR 133 259 -3 1759 133 12 96 chr15 88974827 88975149 -12405372 + AluJo SINE Alu 1 295 -17 197 253 181 0 chr15 88975707 88975790 -12404731 + L2 LINE L2 3172 3269 -3 2010 174 3 0 chr15 88975962 88976273 -12404248 + AluJb SINE Alu 1 312 0 2144 109 10 16 chr15 88976317 88976620 -12403901 + AluSc SINE Alu 1 301 -8 601 243 128 18 chr15 88976655 88976881 -12403640 + MIR SINE MIR 2 252 -10 1428 172 109 8 chr15 88976997 88977253 -12403268 - AluJb SINE Alu -12 300 19 279 259 29 0 chr15 88978085 88978161 -12402360 + MIR SINE MIR 80 158 -50 725 263 28 9 chr15 88978387 88978604 -12401917 - LTR16C LTR ERVL -11 480 260 288 237 144 17 chr15 88980152 88980270 -12400251 - L1ME4a LINE L1 -43 6078 5946 210 71 0 0 chr15 88980281 88980309 -12400212 + (CATTT)n Simple_repeat Simple_repeat 3 30 0 2155 105 0 0 chr15 88980318 88980595 -12399926 - AluSx SINE Alu -35 277 1 24 0 0 0 chr15 88980906 88980930 -12399591 + AT_rich Low_complexity Low_complexity 1 24 0 2093 125 3 13 chr15 88980997 88981301 -12399220 - AluJo SINE Alu -11 301 1 338 235 128 34 chr15 88983925 88984074 -12396447 - L1ME2 LINE L1 -25 6139 5977 242 269 13 39 chr15 88985448 88985526 -12394995 + MIR SINE MIR 186 261 -1 181 293 211 30 chr15 88986741 88986874 -12393647 - MIR SINE MIR -13 249 93 294 266 13 25 chr15 88987001 88987080 -12393441 + L2 LINE L2 3234 3311 -2 186 206 0 0 chr15 88987355 88987389 -12393132 + L2 LINE L2 3032 3065 -207 1172 115 0 0 chr15 88987500 88987648 -12392873 + AluSq/x SINE Alu 1 148 -164 358 143 0 0 chr15 88987648 88987704 -12392817 + AluSc SINE Alu 199 254 -45 1356 145 112 85 chr15 88987804 88987882 -12392639 - MER39B LTR ERV1 -313 340 266 1753 159 7 24 chr15 88987882 88988177 -12392344 - AluJb SINE Alu -18 294 5 2186 128 0 7 chr15 88988187 88988491 -12392030 - AluSg SINE Alu -8 302 1 1356 145 112 85 chr15 88988491 88988548 -12391973 - MER39B LTR ERV1 -395 258 204 2323 109 0 3 chr15 88988548 88988851 -12391670 - AluSx SINE Alu -10 302 1 1356 145 112 85 chr15 88988851 88989034 -12391487 - MER39B LTR ERV1 -449 204 1 420 298 125 35 chr15 88989932 88990436 -12390085 - L1ME2 LINE L1 -161 5960 5398 2139 111 0 14 chr15 88990436 88990733 -12389788 + AluSq SINE Alu 1 293 -20 420 298 125 35 chr15 88990733 88990795 -12389726 - L1ME2 LINE L1 -723 5398 5343 834 210 12 6 chr15 88990801 88990968 -12389553 - FRAM SINE Alu -8 168 1 366 153 4 110 chr15 88991124 88991256 -12389265 - MER41A LTR ERV1 -9 516 403 2376 98 0 13 chr15 88991258 88991563 -12388958 + AluSx SINE Alu 2 302 -10 1524 191 0 4 chr15 88991571 88991844 -12388677 + AluJo SINE Alu 33 304 -8 2269 121 109 12 chr15 88991844 88992257 -12388264 + MER84 LTR ERVI 16 468 -39 836 68 42 0 chr15 88992258 88992376 -12388145 - MER41A LTR ERV1 0 554 432 2309 107 0 0 chr15 88992377 88992675 -12387846 + AluSg SINE Alu 1 298 -12 23 54 0 0 chr15 88992847 88992884 -12387637 + AT_rich Low_complexity Low_complexity 1 37 0 1283 141 5 25 chr15 88992901 88993099 -12387422 - AluJb SINE Alu -15 297 104 1190 113 11 11 chr15 88993107 88993284 -12387237 + AluSx SINE Alu 7 183 -129 930 79 79 0 chr15 88993312 88993438 -12387083 - AluSq/x SINE Alu -176 136 1 1868 156 30 3 chr15 88993449 88993788 -12386733 - MER66A LTR ERV1 -104 374 27 621 114 25 158 chr15 88993791 88993893 -12386628 + LTR23 LTR ERV1 301 376 -61 1833 167 13 3 chr15 88993893 88994193 -12386328 - AluJo SINE Alu -9 303 1 621 114 25 158 chr15 88994193 88994248 -12386273 + LTR23 LTR ERV1 376 437 0 2066 114 0 62 chr15 88994296 88994603 -12385918 + AluSx SINE Alu 5 292 -20 2015 110 3 23 chr15 88995280 88995589 -12384932 + AluSq SINE Alu 1 303 -10 845 139 7 7 chr15 88995746 88995883 -12384638 - FRAM SINE Alu -7 169 33 23 0 0 0 chr15 88996018 88996041 -12384480 + AT_rich Low_complexity Low_complexity 1 23 0 1681 150 26 44 chr15 88996047 88996150 -12384371 + L1MB3 LINE L1 5850 5953 -230 1619 178 52 0 chr15 88996150 88996270 -12384251 + AluJo SINE Alu 1 113 -199 303 28 0 0 chr15 88996270 88996306 -12384215 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 1619 178 52 0 chr15 88996306 88996472 -12384049 + AluJo SINE Alu 113 302 -10 1681 150 26 44 chr15 88996472 88996707 -12383814 + L1MB3 LINE L1 5953 6182 -1 271 169 5 1 chr15 88996726 88996949 -12383572 + AluJo SINE Alu 42 296 -6 587 280 105 21 chr15 88996969 88997255 -12383266 + L1ME LINE L1 5482 5791 -330 791 179 21 14 chr15 88997272 88997417 -12383104 + MER82 DNA MER2_type 1 146 -507 1700 46 5 5 chr15 88997568 88997784 -12382737 - L1PA3 LINE L1 0 6155 5940 1936 144 0 17 chr15 88997870 88998169 -12382352 - AluSx SINE Alu -18 294 1 1782 141 31 3 chr15 88998178 88998469 -12382052 - AluJo SINE Alu -13 299 1 1651 197 60 90 chr15 88998833 88999006 -12381515 + MER82 DNA MER2_type 199 376 -277 2083 115 3 0 chr15 88999006 88999301 -12381220 + AluSx SINE Alu 1 296 -16 1651 197 60 90 chr15 88999301 88999594 -12380927 + MER82 DNA MER2_type 376 651 -2 2241 91 3 0 chr15 88999619 88999917 -12380604 + AluSq SINE Alu 1 299 -14 1615 169 7 11 chr15 88999987 89000300 -12380221 + AluJb SINE Alu 1 312 0 738 192 23 0 chr15 89000303 89000433 -12380088 + FLAM_A SINE Alu 1 133 0 198 0 0 0 chr15 89000463 89000485 -12380036 + (A)n Simple_repeat Simple_repeat 1 22 0 414 289 92 71 chr15 89000486 89000725 -12379796 - MER102a DNA MER1_type -15 315 72 2257 103 3 0 chr15 89000742 89001094 -12379427 + AluSp SINE Alu 2 354 0 634 148 90 0 chr15 89001168 89001290 -12379231 + FRAM SINE Alu 41 173 -3 2041 116 0 31 chr15 89001550 89001870 -12378651 - AluSx SINE Alu -2 310 1 257 182 0 45 chr15 89002722 89002766 -12377755 + MER81 DNA DNA 1 42 -72 461 203 0 0 chr15 89002844 89002923 -12377598 + MER81 DNA DNA 36 114 0 637 226 51 0 chr15 89002923 89003060 -12377461 + MIR SINE MIR 29 172 -90 2596 124 52 56 chr15 89003107 89003629 -12376892 - MER4E LTR ERV1 0 766 80 2038 127 3 3 chr15 89003629 89003937 -12376584 - AluSx SINE Alu -3 309 2 2596 124 52 56 chr15 89003937 89004017 -12376504 - MER4E LTR ERV1 -686 80 1 1338 69 23 69 chr15 89004042 89004093 -12376428 + L1MA2 LINE L1 6099 6151 -153 916 109 0 36 chr15 89004093 89004231 -12376290 + FLAM_C SINE Alu 1 133 0 1338 69 23 69 chr15 89004231 89004395 -12376126 + L1MA2 LINE L1 6151 6304 0 2011 108 0 7 chr15 89004412 89004723 -12375798 + AluSx SINE Alu 1 309 0 1234 165 63 7 chr15 89004896 89005181 -12375340 - AluSq SINE Alu -12 301 1 720 204 26 80 chr15 89005183 89005279 -12375242 - L1MC4a LINE L1 -1983 5825 5725 210 37 0 0 chr15 89005279 89005306 -12375215 + (TTA)n Simple_repeat Simple_repeat 1 27 0 948 196 0 6 chr15 89005306 89005464 -12375057 - FAM SINE Alu -18 157 1 720 204 26 80 chr15 89005464 89005592 -12374929 - L1MC4a LINE L1 -2081 5727 5612 231 196 0 22 chr15 89005876 89005922 -12374599 - LTR16A1 LTR ERVL 0 457 413 1667 185 0 16 chr15 89006604 89006934 -12373587 + AluJo SINE Alu 1 312 0 508 163 0 101 chr15 89006980 89007005 -12373516 + MER104 DNA Tc2 14 40 -1858 2066 113 0 0 chr15 89007005 89007296 -12373225 - AluSx SINE Alu -21 291 1 508 163 0 101 chr15 89007296 89007399 -12373122 + MER104 DNA Tc2 40 129 -51 535 188 0 30 chr15 89008075 89008176 -12372345 + MER5A DNA MER1_type 9 106 -83 231 132 26 0 chr15 89008202 89008240 -12372281 + L1MB7 LINE L1 5750 5788 -386 1094 174 5 23 chr15 89008240 89008458 -12372063 + AluJb SINE Alu 1 214 -98 1850 145 17 31 chr15 89008458 89008745 -12371776 + L1MB7 LINE L1 5823 6106 -78 2123 120 0 0 chr15 89008745 89009046 -12371475 + AluSx SINE Alu 1 301 -11 1850 145 17 31 chr15 89009046 89009109 -12371412 + L1MB7 LINE L1 6106 6168 -16 434 204 111 19 chr15 89009851 89009959 -12370562 + FLAM_C SINE Alu 14 131 -12 1157 110 0 6 chr15 89010099 89010262 -12370259 - AluSg/x SINE Alu -17 295 134 1996 121 3 7 chr15 89010262 89010582 -12369939 - AluSx SINE Alu 0 312 1 22 88 0 0 chr15 89010642 89010699 -12369822 + AT_rich Low_complexity Low_complexity 1 57 0 30 0 0 0 chr15 89010768 89010798 -12369723 + AT_rich Low_complexity Low_complexity 1 30 0 2288 82 0 13 chr15 89010840 89011155 -12369366 - AluY SINE Alu 0 311 1 1939 109 3 14 chr15 89011156 89011318 -12369203 - AluSx SINE Alu -17 295 136 2038 119 0 0 chr15 89011318 89011612 -12368909 - AluSg SINE Alu -16 294 1 1939 109 3 14 chr15 89011612 89011734 -12368787 - AluSx SINE Alu -176 136 14 236 190 35 17 chr15 89012331 89012389 -12368132 + (TATG)n Simple_repeat Simple_repeat 1 59 0 571 279 74 70 chr15 89012404 89012848 -12367673 - MLT1K LTR MaLR 0 588 143 367 316 65 64 chr15 89013142 89013290 -12367231 + MLT1J LTR MaLR 257 403 -212 2117 131 0 6 chr15 89013290 89013604 -12366917 - AluSx SINE Alu 0 312 1 367 316 65 64 chr15 89013604 89013708 -12366813 + MLT1J LTR MaLR 403 615 0 234 143 0 0 chr15 89014150 89014179 -12366342 + MLT1F LTR MaLR 1 29 -513 2107 162 49 50 chr15 89014179 89014202 -12366319 + MLT2B3 LTR ERVL 1 23 -430 1726 185 0 0 chr15 89014202 89014494 -12366027 + AluJo SINE Alu 1 292 -20 2107 162 49 50 chr15 89014494 89014910 -12365611 + MLT2B3 LTR ERVL 23 453 0 1507 188 211 13 chr15 89014917 89015285 -12365236 + MLT1F LTR MaLR 32 480 -62 1812 159 0 3 chr15 89015285 89015575 -12364946 - AluJo SINE Alu -22 290 2 1507 188 211 13 chr15 89015575 89015589 -12364932 + MLT1F LTR MaLR 480 490 -52 3196 191 28 84 chr15 89015624 89016646 -12363875 - LTR5 LTR ERVK 0 969 5 363 148 3 2 chr15 89018508 89018590 -12361931 + MLT1F1 LTR MaLR 477 559 -2 2067 84 0 7 chr15 89018617 89018901 -12361620 + AluSx SINE Alu 1 282 -30 249 33 0 0 chr15 89018904 89018934 -12361587 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 184 365 0 0 chr15 89019661 89019713 -12360808 + L2 LINE L2 3136 3187 -85 2419 68 0 0 chr15 89019746 89020057 -12360464 - AluY SINE Alu 0 311 1 1347 115 5 0 chr15 89020274 89020466 -12360055 - AluSx SINE Alu -119 193 1 486 123 14 0 chr15 89020467 89020540 -12359981 - MER5A DNA MER1_type -115 74 1 342 0 0 0 chr15 89021205 89021243 -12359278 + (TG)n Simple_repeat Simple_repeat 2 39 0 242 59 0 29 chr15 89021246 89021280 -12359241 - MIR SINE MIR -74 188 156 256 235 0 0 chr15 89022061 89022112 -12358409 - L2 LINE L2 -18 3295 3245 2004 125 3 3 chr15 89022165 89022461 -12358060 - AluSx SINE Alu -15 297 2 2096 110 0 0 chr15 89024237 89024528 -12355993 + AluSx SINE Alu 1 291 -21 2812 3 0 0 chr15 89024620 89024930 -12355591 + AluYb8 SINE Alu 1 310 -8 238 146 36 0 chr15 89025594 89025649 -12354872 + L1ME4a LINE L1 5379 5435 -686 679 253 14 0 chr15 89025658 89025804 -12354717 + MIR SINE MIR 2 149 -113 2088 100 28 0 chr15 89025806 89026095 -12354426 + AluSg SINE Alu 1 297 -13 1837 146 0 10 chr15 89026118 89026412 -12354109 + AluSx SINE Alu 1 291 -21 1616 168 17 7 chr15 89026477 89026769 -12353752 - AluJo SINE Alu -17 295 1 623 248 65 76 chr15 89026784 89027074 -12353447 + L1ME4a LINE L1 5483 5769 -352 514 61 0 0 chr15 89027075 89027141 -12353380 - FRAM SINE Alu -79 97 32 395 280 201 29 chr15 89027207 89027486 -12353035 + L1ME4a LINE L1 5784 6110 -11 784 173 0 0 chr15 89027496 89027629 -12352892 + FLAM_C SINE Alu 1 133 0 1312 87 6 0 chr15 89027638 89027811 -12352710 + AluSx SINE Alu 14 187 -125 350 276 211 20 chr15 89028158 89028310 -12352211 + MER5A DNA MER1_type 9 189 0 1957 149 0 0 chr15 89029834 89030123 -12350398 - AluJb SINE Alu -23 289 1 1960 128 3 7 chr15 89030176 89030481 -12350040 - AluSx SINE Alu -8 304 1 1007 316 98 9 chr15 89030719 89031511 -12349010 + L2 LINE L2 2451 3313 0 253 319 148 24 chr15 89031515 89031725 -12348796 - L2 LINE L2 -402 2912 2677 214 184 0 0 chr15 89031774 89031812 -12348709 + MIR SINE MIR 200 237 -25 1698 155 0 39 chr15 89032054 89032363 -12348158 + AluJo SINE Alu 1 297 -15 1559 158 0 63 chr15 89032446 89032629 -12347892 - AluJb SINE Alu -16 296 103 1967 113 0 7 chr15 89032629 89032912 -12347609 + AluSq SINE Alu 1 281 -32 204 40 0 0 chr15 89032919 89032944 -12347577 + (TAA)n Simple_repeat Simple_repeat 3 27 0 1559 158 0 63 chr15 89032944 89033068 -12347453 - AluJb SINE Alu -215 97 1 1595 97 90 34 chr15 89033183 89033485 -12347036 - AluSx SINE Alu 0 317 1 183 405 0 13 chr15 89034156 89034235 -12346286 - L2 LINE L2 -10 3262 3185 682 244 17 11 chr15 89034256 89034432 -12346089 + MIR SINE MIR 79 255 -7 226 359 0 11 chr15 89034630 89034722 -12345799 + MER5A DNA MER1_type 1 91 -98 361 263 35 40 chr15 89034728 89034926 -12345595 + L1ME3A LINE L1 5779 5975 -195 1696 147 0 0 chr15 89035008 89035273 -12345248 - AluSx SINE Alu -3 309 45 203 167 0 0 chr15 89035542 89035578 -12344943 + (CA)n Simple_repeat Simple_repeat 1 36 0 2300 94 3 3 chr15 89035863 89036172 -12344349 - AluSx SINE Alu -3 309 1 305 214 68 34 chr15 89036263 89036380 -12344141 - L1MC/D LINE L1 -2336 5472 5352 254 187 176 22 chr15 89036519 89036610 -12343911 - L1ME4a LINE L1 -50 6071 5967 190 154 51 0 chr15 89036639 89036678 -12343843 + MIR SINE MIR 103 143 -119 25 51 0 0 chr15 89036907 89036946 -12343575 + AT_rich Low_complexity Low_complexity 1 39 0 2056 114 3 0 chr15 89037103 89037392 -12343129 + AluSg SINE Alu 6 295 -15 324 331 88 7 chr15 89037479 89037615 -12342906 + L1MC4 LINE L1 6550 6696 -1346 * 341 264 22 11 chr15 89037542 89037633 -12342888 - L1MC4 LINE L1 -1341 6701 6610 1738 164 3 3 chr15 89037682 89037975 -12342546 + AluJo SINE Alu 1 293 -19 1999 115 7 3 chr15 89038025 89038321 -12342200 - AluSx SINE Alu -14 298 2 2326 80 0 0 chr15 89038916 89039217 -12341304 - AluSx SINE Alu -11 301 1 1163 89 0 6 chr15 89039232 89039389 -12341132 - AluSg1 SINE Alu -153 156 1 432 267 122 72 chr15 89039668 89039813 -12340708 - L2 LINE L2 0 3272 3136 2154 119 0 0 chr15 89039813 89040123 -12340398 - AluSx SINE Alu -2 310 1 432 267 122 72 chr15 89040123 89040239 -12340282 - L2 LINE L2 -136 3136 2998 21 0 0 0 chr15 89040431 89040452 -12340069 + AT_rich Low_complexity Low_complexity 1 21 0 1982 126 0 13 chr15 89040545 89040846 -12339675 - AluSx SINE Alu -5 307 11 1870 141 0 3 chr15 89040857 89041154 -12339367 - AluJb SINE Alu -12 300 5 5264 78 3 26 chr15 89041405 89042109 -12338412 + LTR12 LTR ERV1 1 688 0 2158 91 7 0 chr15 89042399 89042697 -12337824 - AluY SINE Alu -11 300 1 665 312 97 0 chr15 89042850 89043087 -12337434 + MIR SINE MIR 3 262 0 761 274 83 0 chr15 89043556 89043786 -12336735 + MIR SINE MIR 1 249 -13 2033 212 94 40 chr15 89044368 89044869 -12335652 - MLT1E3 LTR MaLR -92 532 5 6625 169 7 19 chr15 89044913 89045310 -12335211 - THE1B-int LTR MaLR -199 1452 1052 2141 150 31 3 chr15 89045310 89045664 -12334857 - THE1B LTR MaLR 0 364 1 6625 169 7 19 chr15 89045664 89046364 -12334157 - THE1B-int LTR MaLR -599 1052 371 2448 84 3 0 chr15 89046364 89046663 -12333858 + AluSx SINE Alu 1 300 -12 6625 169 7 19 chr15 89046663 89047030 -12333491 - THE1B-int LTR MaLR -1280 371 1 2600 117 45 40 chr15 89047030 89047085 -12333436 - MSTA LTR MaLR 0 428 375 2015 148 0 10 chr15 89047085 89047383 -12333138 - AluSx SINE Alu -17 295 1 2600 117 45 40 chr15 89047383 89047753 -12332768 - MSTA LTR MaLR -53 375 1 253 235 0 0 chr15 89047810 89047861 -12332660 - HsTC2 DNA Tc2 -1819 79 29 245 297 22 22 chr15 89047985 89048076 -12332445 - L2 LINE L2 -235 3037 2947 267 229 17 131 chr15 89048278 89048453 -12332068 - L1ME4a LINE L1 -59 6062 5908 283 258 54 11 chr15 89049099 89049192 -12331329 - L1P2 LINE L1 -329 5825 5729 307 310 96 57 chr15 89049211 89049440 -12331081 - L1ME4a LINE L1 -2132 5676 5439 1511 163 62 10 chr15 89049453 89049742 -12330779 - AluJb SINE Alu -8 304 1 391 291 173 6 chr15 89049785 89049964 -12330557 + MIR SINE MIR 12 220 -42 2281 126 0 0 chr15 89050095 89050405 -12330116 + AluSx SINE Alu 1 310 -2 2393 91 0 0 chr15 89050668 89050964 -12329557 + AluSx SINE Alu 1 296 -16 2204 105 6 35 chr15 89051011 89051324 -12329197 + AluSq SINE Alu 1 304 -9 29 28 0 0 chr15 89051362 89051398 -12329123 + AT_rich Low_complexity Low_complexity 1 36 0 2463 75 7 0 chr15 89051556 89051861 -12328660 - AluY SINE Alu -4 307 1 2434 96 0 0 chr15 89051864 89052167 -12328354 - AluSg SINE Alu -7 303 1 1772 154 12 72 chr15 89052495 89052827 -12327694 + AluSx SINE Alu 1 312 0 1293 139 5 40 chr15 89053792 89054015 -12326506 + AluJo SINE Alu 82 296 -16 378 0 0 0 chr15 89054142 89054184 -12326337 + (CA)n Simple_repeat Simple_repeat 2 43 0 2233 102 3 0 chr15 89054343 89054636 -12325885 + AluSq SINE Alu 1 294 -19 2289 85 3 26 chr15 89056199 89056506 -12324015 - AluY SINE Alu -10 301 2 1903 144 0 10 chr15 89056517 89056808 -12323713 - AluSx SINE Alu -24 288 1 200 266 105 42 chr15 89057762 89057905 -12322616 - L2 LINE L2 -946 2368 2217 2448 82 0 7 chr15 89057952 89058258 -12322263 + AluSx SINE Alu 1 304 -8 2651 42 0 0 chr15 89058259 89058568 -12321953 + AluY SINE Alu 2 310 -1 204 247 111 0 chr15 89059927 89060008 -12320513 + MIR SINE MIR 45 134 -74 1713 120 106 7 chr15 89060432 89060707 -12319814 - AluSq SINE Alu -11 302 1 1866 160 7 7 chr15 89060763 89061063 -12319458 + AluJo SINE Alu 1 300 -12 596 254 158 5 chr15 89061305 89061514 -12319007 + MIR SINE MIR 16 256 -6 1665 165 0 15 chr15 89062042 89062315 -12318206 + AluJb SINE Alu 1 269 -43 180 0 0 0 chr15 89063160 89063180 -12317341 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 211 150 100 0 chr15 89063749 89063789 -12316732 - MIR3 SINE MIR -48 160 117 2277 105 10 0 chr15 89063831 89064135 -12316386 - AluSx SINE Alu -5 307 1 338 244 51 68 chr15 89064153 89064279 -12316242 - MER5A DNA MER1_type -3 186 62 1234 130 118 127 chr15 89064279 89064625 -12315896 + MER2 DNA MER2_type 2 344 0 338 244 51 68 chr15 89064625 89064674 -12315847 - MER5A DNA MER1_type -127 62 14 2411 75 3 7 chr15 89064942 89065248 -12315273 + AluSp SINE Alu 1 305 -8 2582 62 0 0 chr15 89066403 89066710 -12313811 - AluY SINE Alu -4 307 1 2319 91 0 3 chr15 89067946 89068244 -12312277 - AluSx SINE Alu -15 297 1 2615 62 0 0 chr15 89068601 89068906 -12311615 - AluY SINE Alu -6 305 1 2413 96 0 6 chr15 89068962 89069276 -12311245 - AluSq SINE Alu -1 312 1 1028 155 150 0 chr15 89069623 89069810 -12310711 - Tigger5 DNA MER2_type 0 2323 2109 2149 128 3 10 chr15 89069811 89070116 -12310405 + AluSx SINE Alu 1 303 -9 825 162 73 42 chr15 89070149 89070340 -12310181 - AluJo SINE Alu -115 197 1 523 179 8 65 chr15 89070761 89070884 -12309637 - AluJo SINE Alu -176 136 21 21 0 0 0 chr15 89072419 89072440 -12308081 + AT_rich Low_complexity Low_complexity 1 21 0 531 279 128 14 chr15 89072660 89072879 -12307642 - MIR SINE MIR -12 250 7 203 264 264 8 chr15 89072977 89073098 -12307423 - MIR SINE MIR -94 168 17 1503 153 8 28 chr15 89074080 89074334 -12306187 + AluJo SINE Alu 1 249 -63 28 29 0 0 chr15 89074498 89074533 -12305988 + AT_rich Low_complexity Low_complexity 1 35 0 2114 116 0 3 chr15 89074765 89075057 -12305464 - AluSx SINE Alu -12 300 10 1366 270 46 33 chr15 89075155 89075698 -12304823 - L1MC/D LINE L1 -743 5403 5196 1773 128 80 7 chr15 89075698 89075972 -12304549 - AluSx SINE Alu -18 294 1 1366 270 46 33 chr15 89075972 89076211 -12304310 - L1MC/D LINE L1 -950 5196 4962 325 282 51 39 chr15 89076665 89076821 -12303700 + MER103 DNA DNA 2 159 -7 384 344 58 41 chr15 89077117 89077408 -12303113 + L3 LINE CR1 117 412 -1165 1135 64 21 0 chr15 89077412 89077553 -12302968 - AluY SINE Alu -166 145 2 649 170 59 0 chr15 89077553 89077688 -12302833 + L1MB7 LINE L1 6026 6168 -16 273 328 208 11 chr15 89077860 89078144 -12302377 + L3 LINE CR1 786 1125 -452 299 333 34 0 chr15 89078296 89078413 -12302108 + L3 LINE CR1 1122 1242 -335 816 197 0 0 chr15 89079895 89080042 -12300479 - AluJ SINE Alu -24 288 142 2269 122 0 0 chr15 89080327 89080631 -12299890 - AluSx SINE Alu -8 304 1 724 200 7 7 chr15 89080632 89080767 -12299754 - AluJ SINE Alu -176 136 2 2810 38 2 0 chr15 89080848 89081345 -12299176 - L1PA5 LINE L1 -606 5548 5050 5041 43 0 13 chr15 89081345 89081950 -12298571 + L1PA5 LINE L1 5554 6154 0 829 180 0 31 chr15 89082350 89082538 -12297983 - AluJb SINE Alu 0 312 137 465 207 74 22 chr15 89083000 89083135 -12297386 - L1MB7 LINE L1 -10 6174 6033 193 313 129 7 chr15 89083409 89083556 -12296965 + L2 LINE L2 2586 2750 -564 3095 107 64 4 chr15 89084375 89084841 -12295680 - MER84 LTR ERVI 0 507 14 377 258 17 33 chr15 89084844 89084964 -12295557 - MIR SINE MIR -51 211 94 529 143 0 195 chr15 89085267 89085421 -12295100 + AluSq/x SINE Alu 2 125 -187 23 0 0 0 chr15 89085426 89085449 -12295072 + AT_rich Low_complexity Low_complexity 1 23 0 393 362 151 15 chr15 89085451 89086053 -12294468 + L2 LINE L2 1782 2465 -849 245 274 91 48 chr15 89086148 89086378 -12294143 - L1ME LINE L1 -589 5532 5293 7968 45 6 9 chr15 89087115 89087672 -12292849 - L1PA5 LINE L1 -2 6152 5595 2443 84 0 0 chr15 89087672 89087970 -12292551 - AluY SINE Alu -13 298 1 7968 45 6 9 chr15 89087970 89089053 -12291468 - L1PA5 LINE L1 -559 5595 4407 1680 170 3 10 chr15 89089398 89089692 -12290829 + AluJo SINE Alu 1 292 -20 310 286 148 39 chr15 89089958 89089969 -12290552 + MIR SINE MIR 10 18 -244 1574 139 82 36 chr15 89089969 89090250 -12290271 + AluJb SINE Alu 12 305 -7 310 286 148 39 chr15 89090250 89090441 -12290080 + MIR SINE MIR 18 234 -28 287 325 13 0 chr15 89090893 89090970 -12289551 + L3 LINE CR1 1007 1084 -493 448 211 23 39 chr15 89091033 89091161 -12289360 - MIR SINE MIR -1 261 136 241 299 137 20 chr15 89091268 89091465 -12289056 - MIR SINE MIR -35 227 8 227 267 55 124 chr15 89091531 89091748 -12288773 + L3 LINE CR1 1371 1572 -5 563 178 19 19 chr15 89091830 89091937 -12288584 - AluJb SINE Alu -26 286 180 1885 113 62 4 chr15 89091964 89092239 -12288282 + AluSx SINE Alu 1 291 -21 2399 98 0 0 chr15 89092287 89092584 -12287937 + AluSx SINE Alu 1 297 -15 277 329 13 0 chr15 89092687 89092763 -12287758 + L3 LINE CR1 1007 1083 -494 391 176 0 27 chr15 89092784 89092858 -12287663 - AluSp/q SINE Alu -2 301 230 1242 147 0 16 chr15 89092858 89093049 -12287472 - AluSx SINE Alu -119 193 6 296 282 119 13 chr15 89093438 89093665 -12286856 + L1ME LINE L1 5604 5854 -267 537 58 0 0 chr15 89093703 89093772 -12286749 + (TA)n Simple_repeat Simple_repeat 1 69 0 2091 133 3 0 chr15 89093800 89094086 -12286435 - AluJo SINE Alu -25 287 1 1753 179 4 0 chr15 89094340 89094620 -12285901 - AluSx SINE Alu -27 285 5 2292 104 0 7 chr15 89095646 89095943 -12284578 + AluSx SINE Alu 1 295 -17 2349 119 0 0 chr15 89096121 89096431 -12284090 + AluSx SINE Alu 3 312 0 210 167 0 0 chr15 89096560 89096596 -12283925 + T-rich Low_complexity Low_complexity 1 36 0 2496 66 0 3 chr15 89097764 89098066 -12282455 + AluSg SINE Alu 1 301 -9 1416 191 24 0 chr15 89098077 89098329 -12282192 + AluJo SINE Alu 1 258 -54 2208 116 0 0 chr15 89098549 89098843 -12281678 + AluSx SINE Alu 1 294 -18 1745 165 0 17 chr15 89099171 89099468 -12281053 - AluJb SINE Alu -20 292 1 1600 159 3 62 chr15 89099588 89099896 -12280625 + AluJb SINE Alu 1 290 -22 2168 100 7 7 chr15 89099953 89100242 -12280279 - AluSx SINE Alu -22 290 2 281 350 148 27 chr15 89100256 89100479 -12280042 - MIR SINE MIR -9 253 4 398 166 12 12 chr15 89101016 89101111 -12279410 - L1MB7 LINE L1 -2 6176 6082 449 256 87 17 chr15 89101429 89101601 -12278920 + L1ME LINE L1 5606 5789 -332 271 199 153 19 chr15 89101750 89101877 -12278644 + HAL1b LINE L1 1242 1347 -1 214 146 42 0 chr15 89101978 89102026 -12278495 + (TA)n Simple_repeat Simple_repeat 2 51 0 237 179 29 36 chr15 89102031 89102171 -12278350 + (TATAA)n Simple_repeat Simple_repeat 5 143 0 330 317 77 27 chr15 89103206 89103389 -12277132 + L2 LINE L2 2281 2472 -842 328 293 127 28 chr15 89104041 89104222 -12276299 - L2 LINE L2 0 3313 3115 2423 72 0 3 chr15 89105246 89105566 -12274955 + AluSq SINE Alu 1 319 0 1226 126 150 10 chr15 89105745 89105952 -12274569 - MER46A DNA MER2_type 0 236 1 1975 154 3 0 chr15 89106291 89106584 -12273937 + AluJo SINE Alu 6 299 -13 711 206 54 49 chr15 89107315 89107519 -12273002 + MER46C DNA MER2_type 134 338 0 2283 122 135 21 chr15 89108061 89108445 -12272076 - MSTA LTR MaLR 0 428 1 35 24 0 0 chr15 89108568 89108610 -12271911 + AT_rich Low_complexity Low_complexity 1 42 0 1367 206 31 31 chr15 89108638 89108930 -12271591 - AluJo SINE Alu -20 292 1 299 319 86 0 chr15 89109436 89109552 -12270969 - L2 LINE L2 -1 3312 3187 2296 112 0 0 chr15 89109822 89110116 -12270405 - AluSx SINE Alu -18 294 1 220 274 0 55 chr15 89110128 89110201 -12270320 - MIR SINE MIR -119 89 21 197 250 0 0 chr15 89110706 89110754 -12269767 + MIR SINE MIR 114 161 -101 354 261 62 8 chr15 89111394 89111524 -12268997 - MIR SINE MIR -1 261 125 2476 72 10 3 chr15 89111918 89112224 -12268297 + AluSq SINE Alu 1 308 -5 835 225 109 38 chr15 89112841 89113113 -12267408 - L1MB7 LINE L1 -3 6181 5876 1291 116 53 31 chr15 89113328 89113553 -12266968 + AluSg SINE Alu 61 290 -20 1937 132 0 11 chr15 89113798 89114071 -12266450 + AluSx SINE Alu 21 290 -22 1681 158 25 29 chr15 89114071 89114349 -12266172 - AluJo SINE Alu -31 281 4 2106 100 7 0 chr15 89114895 89115165 -12265356 + AluSx SINE Alu 23 294 -18 333 0 0 0 chr15 89115335 89115372 -12265149 + (TG)n Simple_repeat Simple_repeat 2 38 0 1590 191 24 14 chr15 89115381 89115675 -12264846 - AluJo SINE Alu -15 297 1 1780 143 12 0 chr15 89115960 89116219 -12264302 + AluJb SINE Alu 27 288 -24 30 0 0 0 chr15 89116219 89116249 -12264272 + AT_rich Low_complexity Low_complexity 1 30 0 833 82 97 30 chr15 89116924 89117058 -12263463 - AluSg/x SINE Alu -3 307 165 187 195 49 0 chr15 89117790 89117831 -12262690 - L2 LINE L2 -396 2917 2875 270 239 239 17 chr15 89118142 89118259 -12262262 + L2 LINE L2 3171 3313 0 252 239 45 23 chr15 89118835 89118923 -12261598 - MIR SINE MIR -50 212 123 237 355 177 0 chr15 89118955 89119158 -12261363 + L3 LINE CR1 969 1207 -370 250 323 54 11 chr15 89119241 89119334 -12261187 + L3 LINE CR1 1388 1484 -93 246 245 95 88 chr15 89119384 89119531 -12260990 + L3 LINE CR1 1427 1574 -3 276 98 59 0 chr15 89120903 89120954 -12259567 - L1MA4 LINE L1 -6 6294 6241 5090 134 61 45 chr15 89121000 89122316 -12258205 - L1MA4 LINE L1 -45 6255 4903 1776 154 73 144 chr15 89122316 89122808 -12257713 - MSTB2 LTR MaLR 0 457 1 5090 134 61 45 chr15 89122808 89122924 -12257597 - L1MA4 LINE L1 -1397 4903 4790 2293 102 0 0 chr15 89122925 89123219 -12257302 - AluSc SINE Alu -15 294 1 289 207 0 0 chr15 89123650 89123708 -12256813 - L1MB7 LINE L1 0 6184 6127 474 293 98 65 chr15 89124625 89125245 -12255276 - L1MC5 LINE L1 -291 7751 7128 1216 252 72 98 chr15 89125904 89126607 -12253914 - MER21B LTR ERV1 -155 708 24 277 365 83 6 chr15 89126721 89126877 -12253644 + MIR3 SINE MIR 10 177 -31 2064 105 0 49 chr15 89127682 89127986 -12252535 + AluSx SINE Alu 1 289 -23 248 164 0 0 chr15 89127986 89128041 -12252480 + L1MC4 LINE L1 6649 6703 -1339 1377 261 63 60 chr15 89128079 89128519 -12252002 - L1ME3A LINE L1 -17 6153 5709 2085 108 0 51 chr15 89128519 89128834 -12251687 - AluSx SINE Alu -13 299 1 1377 261 63 60 chr15 89128834 89128963 -12251558 - L1ME3A LINE L1 -461 5709 5582 1965 166 104 14 chr15 89128972 89129387 -12251134 - L1MB8 LINE L1 0 6178 5727 331 111 19 0 chr15 89129388 89129442 -12251079 - L1M4 LINE L1 -397 5781 5727 214 374 0 9 chr15 89129650 89129757 -12250764 + MER5A DNA MER1_type 83 188 -1 329 200 27 0 chr15 89130477 89130552 -12249969 + L1M4 LINE L1 5695 5771 -407 226 105 18 18 chr15 89130760 89130817 -12249704 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 741 175 100 15 chr15 89130925 89131125 -12249396 - L1M4 LINE L1 -2435 4209 3993 1493 74 25 0 chr15 89131152 89131355 -12249166 - MER41A LTR ERV1 -6 548 341 837 211 55 19 chr15 89131355 89131661 -12248860 - L1M4 LINE L1 -5868 674 321 708 201 18 37 chr15 89131674 89131808 -12248713 - L1M4 LINE L1 -6314 228 93 1863 185 0 0 chr15 89131808 89132116 -12248405 + AluJb SINE Alu 1 308 -4 2142 97 31 3 chr15 89132117 89132405 -12248116 + AluSq SINE Alu 1 296 -17 708 201 18 37 chr15 89132405 89132432 -12248089 - L1M4 LINE L1 -6448 94 68 1840 148 48 0 chr15 89132649 89132939 -12247582 + AluSx SINE Alu 1 304 -8 2068 89 0 101 chr15 89132950 89133276 -12247245 + AluY SINE Alu 1 293 -18 246 217 14 29 chr15 89133573 89133642 -12246879 + (TATG)n Simple_repeat Simple_repeat 3 70 0 191 344 108 0 chr15 89134784 89134877 -12245644 + L2 LINE L2 3122 3224 -48 2373 81 0 7 chr15 89135665 89135962 -12244559 + AluY SINE Alu 1 295 -16 1409 168 69 4 chr15 89136612 89136768 -12243753 - AluJo SINE Alu -16 296 152 333 0 0 0 chr15 89136768 89136805 -12243716 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1409 168 69 4 chr15 89136805 89136922 -12243599 - AluJo SINE Alu -160 152 5 2274 99 0 0 chr15 89137906 89138198 -12242323 + AluSx SINE Alu 1 292 -20 1997 117 14 3 chr15 89139145 89139461 -12241060 - AluSx SINE Alu 0 319 1 409 268 41 0 chr15 89139461 89139558 -12240963 - L2 LINE L2 -7 3306 3206 2036 152 0 0 chr15 89139645 89139934 -12240587 + AluJb SINE Alu 1 289 -23 459 235 228 13 chr15 89141458 89141607 -12238914 - MER5A DNA MER1_type 0 189 9 523 291 153 49 chr15 89141617 89142226 -12238295 + L2 LINE L2 1666 2337 -977 618 256 21 110 chr15 89142239 89142575 -12237946 - MLT1J LTR MaLR -44 467 162 2530 67 0 0 chr15 89142599 89142896 -12237625 - AluSp SINE Alu -16 297 1 217 432 0 0 chr15 89143005 89143123 -12237398 + L2 LINE L2 2554 2671 -643 1088 171 14 57 chr15 89143164 89143375 -12237146 + AluJo SINE Alu 85 286 -26 1827 123 16 76 chr15 89145913 89146091 -12234430 - AluSx SINE Alu -14 298 146 2209 99 3 3 chr15 89146091 89146395 -12234126 - AluSq SINE Alu -9 304 1 1827 123 16 76 chr15 89146395 89146533 -12233988 - AluSx SINE Alu -166 146 1 2107 147 0 7 chr15 89146565 89146872 -12233649 + AluSx SINE Alu 1 305 -7 408 252 88 58 chr15 89146961 89147028 -12233493 - L1ME4a LINE L1 -224 5897 5834 1841 166 10 10 chr15 89147028 89147330 -12233191 - AluJb SINE Alu -10 302 1 408 252 88 58 chr15 89147330 89147556 -12232965 - L1ME4a LINE L1 -287 5834 5595 2113 138 3 0 chr15 89149083 89149387 -12231134 - AluSq SINE Alu -8 305 1 458 297 29 36 chr15 89149442 89149580 -12230941 - L2 LINE L2 0 3272 3136 228 161 274 0 chr15 89150387 89150449 -12230072 - MER5C DNA MER1_type -244 80 2 1605 161 0 29 chr15 89150554 89150827 -12229694 + AluJb SINE Alu 3 267 -45 723 186 31 0 chr15 89151204 89151333 -12229188 + FLAM_A SINE Alu 1 133 0 487 200 0 9 chr15 89151597 89151707 -12228814 + MER63 DNA MER1_type 128 236 -825 2270 109 3 0 chr15 89151760 89152064 -12228457 - AluSx SINE Alu -7 305 1 741 288 154 0 chr15 89152074 89152341 -12228180 - MLT1D LTR MaLR -8 497 190 234 0 0 0 chr15 89152366 89152392 -12228129 + (T)n Simple_repeat Simple_repeat 1 26 0 379 217 0 0 chr15 89152405 89152474 -12228047 - FRAM/FAM SINE Alu -106 69 1 327 295 54 72 chr15 89152598 89152876 -12227645 + L2 LINE L2 2972 3244 -28 194 359 0 26 chr15 89152894 89152972 -12227549 + MIR SINE MIR 47 122 -140 2366 93 0 3 chr15 89155595 89155905 -12224616 - AluY SINE Alu -2 309 1 312 232 30 20 chr15 89155942 89156041 -12224480 + MER5A DNA MER1_type 7 106 -83 2289 124 0 0 chr15 89156529 89156836 -12223685 - AluSx SINE Alu -5 307 1 808 130 0 0 chr15 89157536 89157651 -12222870 - AluJo SINE Alu -10 302 188 876 127 0 15 chr15 89157656 89157790 -12222731 - AluJo SINE Alu -170 132 1 198 0 0 0 chr15 89158505 89158527 -12221994 + (CTG)n Simple_repeat Simple_repeat 2 23 0 998 151 141 109 chr15 89158927 89159037 -12221484 + MER2 DNA MER2_type 5 110 -235 2286 87 3 0 chr15 89159037 89159323 -12221198 + AluY SINE Alu 1 287 -24 306 0 0 0 chr15 89159327 89159361 -12221160 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 998 151 141 109 chr15 89159361 89159549 -12220972 + MER2 DNA MER2_type 112 318 -27 2264 108 10 7 chr15 89160218 89160524 -12219997 - AluSx SINE Alu -5 307 1 502 294 100 4 chr15 89160907 89161138 -12219383 - MIR SINE MIR -6 256 4 2231 71 11 14 chr15 89161893 89162205 -12218316 - AluY SINE Alu 0 311 1 1129 158 201 35 chr15 89163278 89163537 -12216984 + AluJb SINE Alu 1 302 0 2040 140 14 0 chr15 89164057 89164349 -12216172 + AluSx SINE Alu 1 296 -16 344 250 56 0 chr15 89164642 89164750 -12215771 - L1MC4 LINE L1 0 8042 7929 1151 224 25 0 chr15 89164868 89165109 -12215412 - L1MC4 LINE L1 -1089 6953 6707 664 195 43 60 chr15 89165110 89165295 -12215226 - L1MC4 LINE L1 -1982 5826 5645 219 237 25 51 chr15 89165944 89166062 -12214459 + T-rich Low_complexity Low_complexity 6 120 0 437 209 104 8 chr15 89166515 89166649 -12213872 - L1ME4a LINE L1 -3 6118 5972 26 30 0 0 chr15 89166693 89166726 -12213795 + AT_rich Low_complexity Low_complexity 1 33 0 1770 133 50 4 chr15 89166730 89167009 -12213512 - AluSx SINE Alu 0 312 21 304 22 22 22 chr15 89167011 89167057 -12213464 + (TTA)n Simple_repeat Simple_repeat 3 48 0 2253 99 10 29 chr15 89167403 89167717 -12212804 - AluSc SINE Alu -1 308 1 33 0 0 0 chr15 89169497 89169530 -12210991 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr15 89169547 89169572 -12210949 + AT_rich Low_complexity Low_complexity 1 25 0 1058 132 0 36 chr15 89169743 89169910 -12210611 - AluSg/x SINE Alu -18 294 134 2163 93 13 26 chr15 89169910 89170212 -12210309 - AluSq SINE Alu -15 298 1 418 223 118 27 chr15 89170324 89170532 -12209989 + MIR SINE MIR 16 248 -14 2088 99 24 7 chr15 89173780 89174072 -12206449 + AluSx SINE Alu 1 297 -15 2397 83 0 16 chr15 89174470 89174782 -12205739 + AluSc SINE Alu 1 307 -2 2336 93 0 0 chr15 89174791 89175082 -12205439 + AluY SINE Alu 1 291 -20 626 179 24 8 chr15 89175236 89175359 -12205162 + L1MC4 LINE L1 7918 8042 0 2237 120 0 0 chr15 89175360 89175669 -12204852 - AluSx SINE Alu -3 309 1 874 157 36 0 chr15 89175770 89175910 -12204611 + FAM SINE Alu 30 174 -11 277 221 0 23 chr15 89175910 89175996 -12204525 + GA-rich Low_complexity Low_complexity 1 84 0 266 294 53 65 chr15 89176150 89176247 -12204274 - MLT1L LTR MaLR -221 394 297 2405 64 0 3 chr15 89176247 89176558 -12203963 - AluY SINE Alu 0 310 1 266 294 53 65 chr15 89176558 89176629 -12203892 - MLT1L LTR MaLR -318 297 227 347 241 13 0 chr15 89176974 89177053 -12203468 + L2 LINE L2 3234 3313 0 2063 230 43 52 chr15 89177145 89177597 -12202924 - L1MC4 LINE L1 -1 8041 7595 180 97 0 0 chr15 89177597 89177628 -12202893 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2063 230 43 52 chr15 89177628 89177784 -12202737 - L1MC4 LINE L1 -447 7595 7439 1747 204 67 3 chr15 89178470 89178813 -12201708 - MLT1A1 LTR MaLR 0 365 1 288 371 44 0 chr15 89179010 89179169 -12201352 - MER102b DNA MER1_type -30 311 146 750 97 0 0 chr15 89179205 89179298 -12201223 + AluSc SINE Alu 76 168 -141 699 107 10 10 chr15 89179398 89179501 -12201020 + MER20 DNA MER1_type 117 219 0 2228 248 67 31 chr15 89180844 89181716 -12198805 - L1MDa LINE L1 -4268 2272 1370 1009 234 24 16 chr15 89181716 89181964 -12198557 + MLT1C LTR MaLR 212 461 -6 678 268 82 43 chr15 89183640 89184319 -12196202 + L1MEd LINE L1 922 1669 -4641 463 278 85 52 chr15 89184726 89184974 -12195547 + MIR SINE MIR 5 260 -2 9706 139 10 20 chr15 89186372 89187913 -12192608 + HUERS-P3b LTR ERV1 1117 2642 -4776 1982 188 36 3 chr15 89187913 89188274 -12192247 - LTR8 LTR ERV1 -250 441 69 207 0 0 0 chr15 89189749 89189772 -12190749 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 42 65 0 0 chr15 89191813 89191890 -12188631 + AT_rich Low_complexity Low_complexity 1 77 0 2448 63 3 3 chr15 89192115 89192417 -12188104 + AluSp SINE Alu 1 302 -11 195 208 75 38 chr15 89192783 89192836 -12187685 + L2 LINE L2 3008 3062 -251 28 109 0 0 chr15 89193765 89193820 -12186701 + GC_rich Low_complexity Low_complexity 1 55 0 2059 127 3 19 chr15 89195522 89195836 -12184685 - AluSc SINE Alu 0 309 1 276 199 16 57 chr15 89196284 89196372 -12184149 + MIR SINE MIR 100 184 -62 1565 147 0 46 chr15 89197670 89197955 -12182566 + AluJb SINE Alu 3 274 -38 205 176 0 0 chr15 89198995 89199029 -12181492 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 511 221 22 22 chr15 89199830 89199966 -12180555 + MIR SINE MIR 92 227 -35 196 176 59 59 chr15 89200660 89200728 -12179793 + L2 LINE L2 2608 2675 -639 264 358 157 22 chr15 89200854 89201223 -12179298 + L2 LINE L2 2843 3261 -11 840 195 19 0 chr15 89201335 89201494 -12179027 + MER5A DNA MER1_type 28 189 0 4847 147 6 4 chr15 89201704 89202882 -12177639 + L1MA3 LINE L1 4773 5952 -353 1987 112 0 8 chr15 89202882 89203140 -12177381 + AluSq SINE Alu 1 256 -57 258 331 44 101 chr15 89203241 89203537 -12176984 - L2 LINE L2 -28 3244 2966 581 81 27 9 chr15 89203724 89203835 -12176686 + (TAGA)n Simple_repeat Simple_repeat 2 114 0 506 281 132 54 chr15 89204061 89205050 -12175471 + L2 LINE L2 2245 3297 -16 432 301 91 6 chr15 89205608 89205784 -12174737 + MIR SINE MIR 67 257 -5 2335 179 43 71 chr15 89206110 89206740 -12173781 + LTR9 LTR ERV1 1 612 0 342 270 0 0 chr15 89207200 89207300 -12173221 + LTR30 LTR ERV1 525 624 -98 758 153 25 0 chr15 89207303 89207421 -12173100 + LTR12 LTR ERV1 362 482 -232 265 281 148 50 chr15 89207430 89208024 -12172497 - L1M4 LINE L1 -1443 4703 4052 22 56 0 0 chr15 89210689 89210725 -12169796 + AT_rich Low_complexity Low_complexity 1 36 0 1355 93 6 0 chr15 89210725 89210907 -12169614 + AluY SINE Alu 127 309 -2 353 257 20 13 chr15 89214833 89214864 -12165657 + (TA)n Simple_repeat Simple_repeat 1 30 -123 1600 184 126 8 chr15 89214864 89215238 -12165283 + MER47B DNA MER2_type 1 418 0 353 257 20 13 chr15 89215238 89215358 -12165163 + (TA)n Simple_repeat Simple_repeat 30 153 0 3419 117 28 2 chr15 89215564 89216070 -12164451 + L1PB3 LINE L1 5636 6154 0 3058 118 13 8 chr15 89216195 89216668 -12163853 + L1MC1 LINE L1 5859 6333 0 30 27 0 0 chr15 89216673 89216710 -12163811 + AT_rich Low_complexity Low_complexity 1 37 0 313 260 0 0 chr15 89216797 89216870 -12163651 + HsTC2 DNA Tc2 1823 1895 -3 8558 29 2 11 chr15 89217601 89219376 -12161145 + L1PA4 LINE L1 4388 6155 0 502 227 15 15 chr15 89219868 89220000 -12160521 + L1ME LINE L1 4254 4385 -1761 289 116 0 0 chr15 89220518 89220561 -12159960 - MLT1F1 LTR MaLR -3 564 522 232 256 169 26 chr15 89221087 89221282 -12159239 + L1ME LINE L1 5296 5518 -646 1593 148 34 62 chr15 89221790 89222328 -12158193 - L1M2 LINE L1 -744 5402 5037 279 275 84 70 chr15 89222641 89222783 -12157738 + L2 LINE L2 3129 3272 0 4362 232 29 56 chr15 89222902 89224687 -12155834 + L1PA12 LINE L1 7 3051 -4523 423 56 0 0 chr15 89225222 89225276 -12155245 + (TA)n Simple_repeat Simple_repeat 1 54 0 2113 110 0 3 chr15 89227779 89228097 -12152424 + AluSx SINE Alu 1 317 0 231 36 0 0 chr15 89228304 89228332 -12152189 + (TTG)n Simple_repeat Simple_repeat 2 29 0 529 110 123 18 chr15 89228336 89228443 -12152078 - L1PB1 LINE L1 -212 5939 5840 201 323 32 0 chr15 89228520 89228613 -12151908 + MIR3 SINE MIR 110 205 -3 252 224 0 0 chr15 89229570 89229637 -12150884 + (TA)n Simple_repeat Simple_repeat 2 68 0 2488 64 0 3 chr15 89230425 89230723 -12149798 - AluY SINE Alu -14 297 1 254 204 0 0 chr15 89231392 89231441 -12149080 - MER58B DNA MER1_type 0 341 293 1933 163 28 63 chr15 89232023 89232452 -12148069 - MLT2D LTR ERVL 0 414 1 362 189 14 40 chr15 89233458 89233532 -12146989 - MER51A LTR ERV1 -81 553 482 260 169 17 17 chr15 89233536 89233595 -12146926 - L1MC4 LINE L1 -1027 7015 6957 235 236 155 34 chr15 89233645 89233661 -12146860 - L1MA10 LINE L1 0 6334 6319 1255 174 147 25 chr15 89233661 89233941 -12146580 - L1ME1 LINE L1 -6 6160 5833 1673 189 61 48 chr15 89233941 89234402 -12146119 - MLT1C LTR MaLR 0 467 1 1255 174 147 25 chr15 89234402 89234448 -12146073 - L1ME1 LINE L1 -333 5833 5794 714 281 82 75 chr15 89234908 89235096 -12145425 + MLT1H LTR MaLR 9 194 -355 2449 66 0 10 chr15 89235096 89235400 -12145121 + AluY SINE Alu 1 301 -10 714 281 82 75 chr15 89235400 89235748 -12144773 + MLT1H LTR MaLR 194 549 0 421 243 11 73 chr15 89237029 89237206 -12143315 + L2 LINE L2 3148 3313 0 180 0 0 0 chr15 89237379 89237399 -12143122 + (CTTTG)n Simple_repeat Simple_repeat 1 20 0 1522 37 0 21 chr15 89237790 89237978 -12142543 + L1PA7 LINE L1 5941 6124 -30 589 238 39 70 chr15 89237978 89238293 -12142228 + MER97c DNA MER1_type? 96 450 -640 3344 141 18 13 chr15 89238293 89238425 -12142096 - LTR38 LTR ERV1 0 556 426 2439 104 10 36 chr15 89238425 89238810 -12141711 - THE1C LTR MaLR 0 375 1 3344 141 18 13 chr15 89238810 89239230 -12141291 - LTR38 LTR ERV1 -130 426 1 405 375 30 8 chr15 89239363 89239630 -12140891 - L3 LINE CR1 -755 822 550 258 140 194 21 chr15 89239673 89239766 -12140755 - L1ME4a LINE L1 -18 6103 5995 2011 153 0 3 chr15 89239766 89240066 -12140455 - AluSx SINE Alu -11 301 3 1352 165 112 3 chr15 89240110 89240395 -12140126 + MER33 DNA MER1_type 3 318 -6 985 248 144 19 chr15 89240588 89241011 -12139510 + MLT1K LTR MaLR 1 476 0 1538 201 53 13 chr15 89241385 89241689 -12138832 - MER58B DNA MER1_type -25 316 1 414 248 64 13 chr15 89243864 89243880 -12136641 - L1MA10 LINE L1 0 6334 6319 2062 201 40 110 chr15 89243880 89244148 -12136373 - L1ME1 LINE L1 -5 6161 5876 357 43 0 0 chr15 89244148 89244194 -12136327 + MADE1 DNA Mariner 35 80 0 2062 201 40 110 chr15 89244194 89244600 -12135921 - L1ME1 LINE L1 -290 5876 5492 357 264 233 16 chr15 89244792 89244985 -12135536 + MIR SINE MIR 18 252 -10 238 130 43 0 chr15 89245114 89245160 -12135361 - L1ME4a LINE L1 -4 6117 6070 2581 62 0 10 chr15 89245252 89245561 -12134960 + AluY SINE Alu 1 306 -5 373 340 109 25 chr15 89245879 89246282 -12134239 + L1MEd LINE L1 561 997 -5122 1987 163 44 14 chr15 89246765 89247128 -12133393 - MSTB1 LTR MaLR -2 430 57 363 169 84 0 chr15 89247306 89247389 -12133132 + MIR SINE MIR 113 202 -60 943 296 159 7 chr15 89247401 89248302 -12132219 + L2 LINE L2 2266 3313 0 212 225 0 42 chr15 89248291 89248362 -12132159 + MIR SINE MIR 195 262 0 * 264 227 67 113 chr15 89248488 89248609 -12131912 - MIR SINE MIR -65 197 87 1959 137 59 14 chr15 89248609 89248966 -12131555 + THE1C LTR MaLR 3 375 0 264 227 67 113 chr15 89248966 89249038 -12131483 - MIR SINE MIR -175 87 13 575 194 47 39 chr15 89250203 89250332 -12130189 + MER20 DNA MER1_type 1 130 -89 1537 142 0 0 chr15 89250432 89250698 -12129823 + AluJb SINE Alu 66 331 0 317 224 0 0 chr15 89250698 89250765 -12129756 - L1MC4 LINE L1 -773 7269 7203 1097 167 130 22 chr15 89250773 89250838 -12129683 - L1MC4 LINE L1 -961 7081 7024 3219 110 44 25 chr15 89250838 89251320 -12129201 + LTR22B LTR ERVK 2 492 0 1097 167 130 22 chr15 89251320 89251524 -12128997 - L1MC4 LINE L1 -1018 7024 6783 2073 134 6 10 chr15 89251563 89251876 -12128645 - AluSx SINE Alu 0 312 1 506 183 98 72 chr15 89252398 89252472 -12128049 + MER103 DNA DNA 8 79 -87 2172 127 3 3 chr15 89252472 89252772 -12127749 - AluSx SINE Alu -12 300 1 506 183 98 72 chr15 89252772 89252850 -12127671 + MER103 DNA DNA 79 164 -2 216 300 138 23 chr15 89252905 89253035 -12127486 + L2 LINE L2 2503 2647 -667 2067 95 3 0 chr15 89253036 89253319 -12127202 - pTR5 LTR ERV1 -2053 385 102 29 28 0 0 chr15 89254137 89254173 -12126348 + AT_rich Low_complexity Low_complexity 1 36 0 226 170 21 117 chr15 89254426 89254520 -12126001 - MIR SINE MIR 0 262 178 319 233 23 101 chr15 89255588 89255717 -12124804 - MIR3 SINE MIR -1 207 89 340 315 8 23 chr15 89256664 89256794 -12123727 + MLT1J LTR MaLR 165 292 -219 1278 122 22 0 chr15 89256794 89256974 -12123547 + AluJo SINE Alu 1 184 -128 335 284 28 9 chr15 89256981 89257090 -12123431 - HAL1 LINE L1 -865 1642 1532 647 177 0 0 chr15 89257097 89257193 -12123328 + AluJo SINE Alu 191 286 -26 770 231 50 11 chr15 89257205 89257387 -12123134 + MLT1J LTR MaLR 286 474 -37 2273 113 0 0 chr15 89257536 89257837 -12122684 - AluSg SINE Alu -9 301 1 923 279 38 38 chr15 89257925 89258291 -12122230 - HAL1 LINE L1 -1816 691 326 1342 161 17 25 chr15 89258511 89258747 -12121774 + AluJo SINE Alu 1 234 -78 248 219 112 70 chr15 89258851 89259066 -12121455 - L1MEd LINE L1 -5242 877 654 1456 176 0 15 chr15 89259206 89259467 -12121054 - AluJo SINE Alu -45 267 11 890 201 70 82 chr15 89259585 89259632 -12120889 - LTR40b LTR ERVL -16 446 400 1839 148 3 23 chr15 89259632 89259936 -12120585 - AluJb SINE Alu -14 298 1 890 201 70 82 chr15 89259936 89260132 -12120389 - LTR40b LTR ERVL -62 400 206 266 304 87 91 chr15 89260412 89260511 -12120010 + L2 LINE L2 3044 3142 -130 1152 291 77 19 chr15 89260511 89261030 -12119491 + MLT1H LTR MaLR 1 549 0 266 304 87 91 chr15 89261030 89261160 -12119361 + L2 LINE L2 3142 3272 0 554 274 32 43 chr15 89262277 89262463 -12118058 + L2 LINE L2 3126 3309 -4 309 250 83 21 chr15 89262977 89263073 -12117448 + MER91C DNA MER1_type 38 139 -1 1854 210 20 12 chr15 89263243 89263652 -12116869 - L1M4c LINE L1 -4627 1757 1346 465 290 17 23 chr15 89263670 89263846 -12116675 + HAL1 LINE L1 2325 2499 -8 1413 253 195 9 chr15 89263870 89264419 -12116102 + L1MC4a LINE L1 5324 5974 -1834 263 221 195 0 chr15 89265050 89265127 -12115394 + Charlie2 DNA MER1_type 5 96 -2686 677 291 105 63 chr15 89265235 89266043 -12114478 - L1M4 LINE L1 -745 5401 4629 601 244 24 0 chr15 89266043 89266170 -12114351 - FLAM_A SINE Alu -2 131 2 677 291 105 63 chr15 89266170 89266364 -12114157 - L1M4 LINE L1 -1517 4629 4445 1279 278 58 59 chr15 89266364 89266954 -12113567 + MLT1G LTR MaLR 2 590 0 677 291 105 63 chr15 89266954 89267052 -12113469 - L1M4 LINE L1 -1701 4445 4253 679 238 47 6 chr15 89267064 89267236 -12113285 - MER58A DNA MER1_type 0 224 46 800 168 10 64 chr15 89267362 89267564 -12112957 + MER106A DNA MER1_type 35 225 -11 3565 226 80 30 chr15 89268129 89269158 -12111363 + L1MB7 LINE L1 3268 4347 -1799 2491 207 33 7 chr15 89269155 89269725 -12110796 + L1MB7 LINE L1 4706 5290 -856 * 2228 187 19 30 chr15 89269722 89269775 -12110746 + L1MB7 LINE L1 5699 5751 -433 * 1495 209 99 58 chr15 89269775 89270259 -12110262 + MLT1D LTR MaLR 1 504 -1 2228 187 19 30 chr15 89270259 89270676 -12109845 + L1MB7 LINE L1 5751 6164 -20 552 187 9 9 chr15 89270683 89270790 -12109731 - MLT1F1 LTR MaLR -458 109 3 319 290 145 0 chr15 89270925 89271118 -12109403 + L1MCa LINE L1 1444 1664 -4762 702 172 0 0 chr15 89271122 89271238 -12109283 + L1MD3 LINE L1 7730 7845 -150 749 105 11 0 chr15 89271238 89271333 -12109188 + AluSp SINE Alu 82 177 -136 527 275 107 68 chr15 89271449 89271840 -12108681 - L1M4 LINE L1 -2094 4052 3633 2797 97 17 6 chr15 89271840 89272200 -12108321 - THE1B LTR MaLR 0 364 1 527 275 107 68 chr15 89272200 89272350 -12108171 - L1M4 LINE L1 -2513 3633 3490 2684 234 110 33 chr15 89272371 89273159 -12107362 + MER21B LTR ERV1 15 863 0 316 291 85 34 chr15 89273159 89273713 -12106808 - L1M4 LINE L1 -2652 3494 2913 699 244 111 44 chr15 89273725 89273995 -12106526 - L1ME3A LINE L1 -1 6169 5882 951 252 35 10 chr15 89273997 89274287 -12106234 - L1ME3A LINE L1 -200 5970 5674 1879 157 10 3 chr15 89274650 89274949 -12105572 + AluJb SINE Alu 5 305 -7 1167 217 221 74 chr15 89275074 89275285 -12105236 - Charlie2a DNA MER1_type -17 2845 2666 184 29 29 29 chr15 89275285 89275319 -12105202 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2046 109 14 7 chr15 89275321 89275604 -12104917 - AluSx SINE Alu -27 285 1 1167 217 221 74 chr15 89275604 89275817 -12104704 - Charlie2a DNA MER1_type -196 2666 2486 2150 77 26 55 chr15 89275817 89276127 -12104394 - AluSg SINE Alu -9 301 1 1167 217 221 74 chr15 89276127 89276605 -12103916 - Charlie2a DNA MER1_type -376 2486 2080 2344 78 0 0 chr15 89276605 89276901 -12103620 - AluSc SINE Alu -8 301 6 1167 217 221 74 chr15 89276901 89277019 -12103502 - Charlie2a DNA MER1_type -782 2080 1669 586 284 63 0 chr15 89277022 89277212 -12103309 - L1MC5 LINE L1 -47 7914 7713 804 241 35 6 chr15 89277235 89277409 -12103112 + MER20 DNA MER1_type 34 212 -7 230 229 45 85 chr15 89277468 89277669 -12102852 - L1MC5 LINE L1 -258 7703 7511 2214 108 0 13 chr15 89277669 89277976 -12102545 - AluSx SINE Alu -9 303 1 1065 198 11 71 chr15 89277992 89278260 -12102261 - L1MC5 LINE L1 -1057 6904 6653 1873 164 3 3 chr15 89278261 89278565 -12101956 - AluSx SINE Alu -8 304 1 180 0 0 0 chr15 89278838 89278858 -12101663 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1992 136 44 3 chr15 89278861 89279155 -12101366 - AluSc SINE Alu -3 306 1 938 150 0 0 chr15 89279169 89279302 -12101219 - FLAM_C SINE Alu 0 133 1 746 211 43 65 chr15 89279304 89279583 -12100938 - L1MC5 LINE L1 -766 7195 6923 1863 121 61 4 chr15 89279624 89279904 -12100617 - AluSx SINE Alu -16 296 1 1986 92 54 24 chr15 89279910 89280239 -12100282 - AluSp SINE Alu 0 313 1 604 224 13 59 chr15 89280346 89280498 -12100023 + MER63A DNA MER1_type 43 187 -23 2307 103 0 0 chr15 89280501 89280801 -12099720 - AluSq SINE Alu -13 300 1 1287 228 187 11 chr15 89280920 89281363 -12099158 + LTR33 LTR ERVL 1 521 0 1368 182 3 38 chr15 89281366 89281712 -12098809 + pTR5 LTR ERV1 740 1073 -1365 890 159 0 0 chr15 89282540 89282672 -12097849 + FLAM_C SINE Alu 2 133 0 1048 75 12 0 chr15 89283827 89283987 -12096534 + (TTGG)n Simple_repeat Simple_repeat 2 163 0 392 263 69 44 chr15 89286378 89286538 -12093983 - MER103 DNA DNA 0 166 3 2372 50 0 7 chr15 89286594 89286910 -12093611 - AluY SINE Alu 0 314 1 287 325 141 16 chr15 89287368 89287559 -12092962 + MIR SINE MIR 30 244 -18 249 268 28 0 chr15 89288608 89288679 -12091842 + Charlie8 DNA MER1_type 2341 2413 -4 254 250 0 0 chr15 89288851 89288903 -12091618 - L3 LINE CR1 -50 1527 1476 2522 69 0 3 chr15 89289826 89290131 -12090390 + AluSc SINE Alu 1 304 -5 2327 64 0 55 chr15 89290131 89290457 -12090064 + AluY SINE Alu 1 308 -3 370 318 30 45 chr15 89290612 89290744 -12089777 - L2 LINE L2 -4 3268 3139 487 290 202 42 chr15 89290933 89291494 -12089027 - L2 LINE L2 -445 2869 2399 880 216 74 105 chr15 89291494 89291566 -12088955 + MER102b DNA MER1_type 1 74 -1354 276 30 0 0 chr15 89291566 89291599 -12088922 + (TTGG)n Simple_repeat Simple_repeat 2 34 0 880 216 74 105 chr15 89291599 89291878 -12088643 + MER102b DNA MER1_type 74 341 0 487 290 202 42 chr15 89291878 89291896 -12088625 - L2 LINE L2 -915 2399 2385 2539 69 0 3 chr15 89291896 89292202 -12088319 + AluSp SINE Alu 1 305 -8 487 290 202 42 chr15 89292202 89292580 -12087941 - L2 LINE L2 -929 2385 1757 571 246 106 19 chr15 89292768 89292989 -12087532 - MIR SINE MIR -16 246 6 1353 211 27 27 chr15 89293040 89293272 -12087249 - L1M4 LINE L1 -1227 4919 4685 1578 118 185 8 chr15 89293272 89293526 -12086995 + AluJb SINE Alu 1 299 -3 1353 211 27 27 chr15 89293526 89293629 -12086892 - L1M4 LINE L1 -1460 4686 4584 632 278 113 12 chr15 89293789 89294084 -12086437 - Charlie8 DNA MER1_type -2142 275 3 266 256 100 22 chr15 89294084 89294174 -12086347 + MIR3 SINE MIR 88 184 -24 2245 69 17 7 chr15 89294417 89294708 -12085813 - AluY SINE Alu -17 294 1 1340 141 40 0 chr15 89294708 89294906 -12085615 - AluSg/x SINE Alu -22 290 85 212 342 40 0 chr15 89295085 89295161 -12085360 + L2 LINE L2 3201 3279 -34 418 261 100 39 chr15 89295524 89295754 -12084767 + L1MC5 LINE L1 7701 7944 -17 235 317 96 12 chr15 89295910 89296077 -12084444 + MIR SINE MIR 63 243 -19 311 306 41 8 chr15 89296444 89296565 -12083956 + L1ME LINE L1 5544 5668 -453 1115 153 58 156 chr15 89297360 89297520 -12083001 - MER33 DNA MER1_type -2261 324 217 2295 104 7 0 chr15 89297520 89297827 -12082694 + AluSx SINE Alu 1 309 -3 1115 153 58 156 chr15 89297827 89298025 -12082496 - MER33 DNA MER1_type -2368 217 1 2331 108 7 0 chr15 89298809 89299114 -12081407 - AluSx SINE Alu -5 307 1 216 0 0 0 chr15 89299136 89299160 -12081361 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2277 111 0 0 chr15 89299212 89299509 -12081012 - AluSx SINE Alu -15 297 1 1734 209 105 60 chr15 89299510 89300045 -12080476 - L1MC4 LINE L1 -135 7907 7349 457 133 0 0 chr15 89300047 89300107 -12080414 + AluS SINE Alu 3 62 -247 956 157 35 29 chr15 89500773 89500945 -11879576 + AluSq SINE Alu 121 293 -20 2083 126 0 10 chr15 89500957 89501250 -11879271 + AluSx SINE Alu 1 290 -22 230 245 0 0 chr15 89501263 89501312 -11879209 - L1MC4 LINE L1 -607 7435 7387 233 200 65 32 chr15 89504693 89504848 -11875673 + (TTGG)n Simple_repeat Simple_repeat 4 163 0 * 395 192 26 26 chr15 89504803 89505020 -11875501 + (TGG)n Simple_repeat Simple_repeat 1 217 0 213 279 8 25 chr15 89505009 89505131 -11875390 + (TGGG)n Simple_repeat Simple_repeat 4 123 0 * 317 246 47 18 chr15 89505259 89505430 -11875091 + (GGGTG)n Simple_repeat Simple_repeat 1 176 0 218 163 5 65 chr15 89508741 89508925 -11871596 + GA-rich Low_complexity Low_complexity 1 173 0 298 160 6 55 chr15 89508945 89509126 -11871395 + GA-rich Low_complexity Low_complexity 1 172 0 271 293 21 14 chr15 89509133 89509273 -11871248 + G-rich Low_complexity Low_complexity 4 144 0 262 217 50 0 chr15 89512416 89512476 -11868045 + L1MC4 LINE L1 7387 7449 -593 1796 126 78 4 chr15 89512478 89512748 -11867773 - AluSx SINE Alu -22 290 1 2193 116 10 0 chr15 89512759 89513052 -11867469 - AluSx SINE Alu -16 296 1 1564 182 7 30 chr15 89513098 89513400 -11867121 + AluJo SINE Alu 1 295 -17 2446 95 0 0 chr15 89513402 89513707 -11866814 + AluSg SINE Alu 1 305 -5 279 202 75 43 chr15 89513796 89513890 -11866631 + MIR SINE MIR 116 212 -50 486 269 140 34 chr15 89514162 89514426 -11866095 + MLT1I LTR MaLR 101 392 -17 1719 165 6 50 chr15 89514475 89514796 -11865725 - AluSx SINE Alu -5 307 1 372 22 0 0 chr15 89514922 89514967 -11865554 + (TG)n Simple_repeat Simple_repeat 2 46 0 1022 241 3 52 chr15 89514969 89515012 -11865509 + MLT1J LTR MaLR 1 45 -466 2357 96 0 3 chr15 89515012 89515313 -11865208 - AluSx SINE Alu -12 300 1 1022 241 3 52 chr15 89515313 89515576 -11864945 + MLT1J LTR MaLR 45 292 -219 1300 122 22 0 chr15 89515576 89515756 -11864765 + AluJo SINE Alu 1 184 -128 314 284 28 9 chr15 89515763 89515872 -11864649 - HAL1 LINE L1 -865 1642 1532 647 174 0 0 chr15 89515879 89515977 -11864544 + AluJo SINE Alu 191 288 -24 722 231 50 11 chr15 89515987 89516169 -11864352 + MLT1J LTR MaLR 286 474 -37 2299 123 0 0 chr15 89516310 89516619 -11863902 - AluSg SINE Alu -1 309 1 850 279 38 38 chr15 89516707 89517073 -11863448 - HAL1 LINE L1 -1816 691 326 1379 163 17 25 chr15 89517294 89517533 -11862988 + AluJo SINE Alu 1 237 -75 569 264 64 77 chr15 89517551 89517849 -11862672 - L1MEd LINE L1 -5192 927 654 1668 181 7 14 chr15 89517967 89518248 -11862273 - AluJo SINE Alu -23 289 11 303 301 108 42 chr15 89518268 89518363 -11862158 - L1MEd LINE L1 -5650 469 382 1343 186 160 55 chr15 89518363 89518412 -11862109 - LTR40c LTR ERVL -2 463 421 1882 148 3 23 chr15 89518412 89518716 -11861805 - AluJb SINE Alu -14 298 1 1343 186 160 55 chr15 89518716 89519085 -11861436 - LTR40c LTR ERVL -44 421 1 303 301 108 42 chr15 89519085 89519202 -11861319 - L1MEd LINE L1 -5737 382 243 * 686 134 90 2 chr15 89519188 89519324 -11861197 + L1MC3 LINE L1 7480 7824 -171 2342 101 3 0 chr15 89519444 89519740 -11860781 - AluSq SINE Alu -16 297 1 2286 115 0 16 chr15 89519991 89520303 -11860218 + AluSp SINE Alu 1 307 -6 2148 95 44 0 chr15 89520318 89520612 -11859909 + AluSq SINE Alu 5 311 -2 2408 64 0 3 chr15 89520856 89521167 -11859354 + AluY SINE Alu 1 310 0 241 261 58 0 chr15 89521195 89521264 -11859257 + MLT1L LTR MaLR 322 394 -221 199 240 0 27 chr15 89521418 89521493 -11859028 + CT-rich Low_complexity Low_complexity 4 76 0 896 179 33 0 chr15 89521493 89521644 -11858877 - FAM SINE Alu 0 49 1 2269 120 0 0 chr15 89521745 89522054 -11858467 + AluSx SINE Alu 1 309 -3 2892 162 66 40 chr15 89522055 89522392 -11858129 - L1MC4 LINE L1 0 8042 7715 2284 116 13 0 chr15 89522392 89522695 -11857826 - AluSx SINE Alu -1 311 5 2892 162 66 40 chr15 89522695 89523055 -11857466 - L1MC4 LINE L1 -327 7715 7327 1803 104 0 28 chr15 89523056 89523307 -11857214 - AluSg SINE Alu -4 306 63 1090 177 0 25 chr15 89523407 89523610 -11856911 + AluJb SINE Alu 115 312 0 484 290 37 25 chr15 89524078 89524240 -11856281 - L3 LINE CR1 -547 1030 867 2151 114 20 3 chr15 89524547 89524846 -11855675 + AluSg SINE Alu 1 304 -6 21 0 0 0 chr15 89524857 89524878 -11855643 + AT_rich Low_complexity Low_complexity 1 21 0 532 327 13 7 chr15 89525503 89525656 -11854865 - MIR3 SINE MIR -52 156 3 1900 172 0 10 chr15 89525760 89526068 -11854453 + AluJo SINE Alu 1 305 -7 2251 114 3 0 chr15 89526668 89526966 -11853555 + AluSq SINE Alu 1 299 -14 905 126 0 22 chr15 89528063 89528198 -11852323 + FLAM_C SINE Alu 1 132 -1 196 298 35 0 chr15 89528379 89528436 -11852085 + L2 LINE L2 3206 3264 -8 295 239 76 0 chr15 89528461 89528553 -11851968 + Charlie7 DNA MER1_type 8 106 -2506 305 236 64 73 chr15 89528678 89528788 -11851733 + L1MD3 LINE L1 7878 7986 -9 238 266 13 0 chr15 89529474 89529553 -11850968 + L1MC5 LINE L1 7806 7885 -76 276 333 37 7 chr15 89530049 89530184 -11850337 - L3 LINE CR1 -83 1494 1356 25 31 0 0 chr15 89530267 89530299 -11850222 + AT_rich Low_complexity Low_complexity 1 32 0 2081 115 16 19 chr15 89530476 89530789 -11849732 + AluSx SINE Alu 1 312 0 2385 102 3 0 chr15 89531264 89531568 -11848953 + AluSx SINE Alu 3 307 -5 1760 167 47 38 chr15 89531876 89532217 -11848304 + MER2 DNA MER2_type 1 344 0 2130 126 0 23 chr15 89532636 89532938 -11847583 - AluSx SINE Alu -17 295 1 233 148 0 37 chr15 89532938 89532985 -11847536 - L1MB3 LINE L1 -41 6142 6096 479 239 55 37 chr15 89533832 89533995 -11846526 - MLT1J LTR MaLR -60 451 286 647 174 0 0 chr15 89534005 89534103 -11846418 - AluJo SINE Alu -24 288 191 314 284 28 9 chr15 89534110 89534219 -11846302 + HAL1 LINE L1 1532 1642 -865 1293 128 22 0 chr15 89534226 89534406 -11846115 - AluJo SINE Alu -128 184 1 274 246 112 42 chr15 89534479 89534694 -11845827 + HAL1 LINE L1 837 1066 -1441 1215 197 0 5 chr15 89534702 89534915 -11845606 - AluJb SINE Alu -14 298 87 2281 109 0 7 chr15 89534945 89535249 -11845272 + AluSq SINE Alu 1 302 -11 585 204 24 30 chr15 89535249 89535416 -11845105 + HAL1 LINE L1 1084 1249 -1258 2213 120 0 16 chr15 89535417 89535733 -11844788 + AluSx SINE Alu 2 312 0 1688 272 115 17 chr15 89535753 89536371 -11844150 + HAL1 LINE L1 1457 2170 -337 2026 142 0 16 chr15 89536371 89536681 -11843840 + AluJb SINE Alu 2 306 -6 1688 272 115 17 chr15 89536681 89536845 -11843676 + HAL1 LINE L1 2170 2316 -191 1596 143 55 55 chr15 89536875 89537183 -11843338 + AluJo SINE Alu 1 308 -4 722 132 0 0 chr15 89537263 89537369 -11843152 + FLAM_A SINE Alu 28 133 -9 207 0 0 0 chr15 89537530 89537553 -11842968 + (TA)n Simple_repeat Simple_repeat 2 24 0 2300 54 7 17 chr15 89537553 89537847 -11842674 - AluY SINE Alu -20 291 1 2288 96 3 7 chr15 89538054 89538356 -11842165 - AluSx SINE Alu -11 301 1 2463 97 0 0 chr15 89538356 89538664 -11841857 - AluSx SINE Alu -4 308 1 254 286 38 9 chr15 89538848 89538953 -11841568 + LTR67 LTR ERVL 431 538 -19 2320 97 3 3 chr15 89539002 89539301 -11841220 + AluSx SINE Alu 2 300 -12 1236 126 0 11 chr15 89539301 89539477 -11841044 + AluSg/x SINE Alu 132 307 -3 340 248 256 0 chr15 89539624 89539753 -11840768 + L1ME3A LINE L1 5789 5950 -220 1583 147 0 46 chr15 89540133 89540418 -11840103 + AluJb SINE Alu 3 274 -38 35 92 0 0 chr15 89541082 89541180 -11839341 + GC_rich Low_complexity Low_complexity 1 98 0 21 0 0 0 chr15 89541212 89541233 -11839288 + GC_rich Low_complexity Low_complexity 1 21 0 244 229 13 70 chr15 89541437 89541594 -11838927 + G-rich Low_complexity Low_complexity 6 153 0 678 254 28 123 chr15 89542350 89542823 -11837698 + Charlie8 DNA MER1_type 1 428 -1989 232 268 28 0 chr15 89542825 89542896 -11837625 + Charlie8 DNA MER1_type 2341 2413 -4 252 250 0 0 chr15 89543068 89543120 -11837401 - L3 LINE CR1 -50 1527 1476 2564 69 0 3 chr15 89544042 89544347 -11836174 + AluSc SINE Alu 1 304 -5 2377 64 0 55 chr15 89544347 89544673 -11835848 + AluY SINE Alu 1 308 -3 374 318 30 45 chr15 89544828 89544960 -11835561 - L2 LINE L2 -4 3268 3139 625 289 202 42 chr15 89545149 89545710 -11834811 - L2 LINE L2 -445 2869 2399 789 233 65 97 chr15 89545710 89545782 -11834739 + MER102b DNA MER1_type 1 74 -1354 276 30 0 0 chr15 89545782 89545815 -11834706 + (TTGG)n Simple_repeat Simple_repeat 2 34 0 789 233 65 97 chr15 89545815 89546094 -11834427 + MER102b DNA MER1_type 74 341 0 625 289 202 42 chr15 89546094 89546112 -11834409 - L2 LINE L2 -915 2399 2385 2574 69 0 3 chr15 89546112 89546418 -11834103 + AluSp SINE Alu 1 305 -8 625 289 202 42 chr15 89546418 89546796 -11833725 - L2 LINE L2 -929 2385 1757 594 246 106 19 chr15 89546984 89547205 -11833316 - MIR SINE MIR -16 246 6 1247 214 27 27 chr15 89547256 89547488 -11833033 - L1M4 LINE L1 -1227 4919 4685 1504 114 185 8 chr15 89547488 89547742 -11832779 + AluJb SINE Alu 1 299 -3 1247 214 27 27 chr15 89547742 89547845 -11832676 - L1M4 LINE L1 -1460 4686 4584 577 291 64 5 chr15 89548080 89548300 -11832221 - Charlie8 DNA MER1_type -2182 235 3 266 270 90 20 chr15 89548300 89548400 -11832121 + MIR3 SINE MIR 88 194 -14 2280 69 17 7 chr15 89548633 89548924 -11831597 - AluY SINE Alu -17 294 1 1367 141 40 0 chr15 89548924 89549122 -11831399 - AluSg/x SINE Alu -22 288 83 220 317 129 10 chr15 89549301 89549402 -11831119 + L2 LINE L2 3201 3313 0 357 270 100 39 chr15 89549740 89549970 -11830551 + L1MC5 LINE L1 7701 7944 -17 318 275 106 48 chr15 89550126 89550315 -11830206 + MIR SINE MIR 63 262 0 297 320 25 8 chr15 89550659 89550781 -11829740 + L1ME LINE L1 5545 5668 -453 1051 159 58 156 chr15 89551576 89551736 -11828785 - MER33 DNA MER1_type -2261 324 217 2313 104 7 0 chr15 89551736 89552043 -11828478 + AluSx SINE Alu 1 309 -3 1051 159 58 156 chr15 89552043 89552241 -11828280 - MER33 DNA MER1_type -2368 217 1 2343 108 7 0 chr15 89553025 89553330 -11827191 - AluSx SINE Alu -5 307 1 216 0 0 0 chr15 89553352 89553376 -11827145 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2292 111 0 0 chr15 89553428 89553725 -11826796 - AluSx SINE Alu -15 297 1 2069 198 110 71 chr15 89553726 89554263 -11826258 - L1MC4 LINE L1 -135 7907 7339 1717 156 7 26 chr15 89554263 89554570 -11825951 + AluJo SINE Alu 3 303 -9 2069 198 110 71 chr15 89554570 89554677 -11825844 - L1MC4 LINE L1 -703 7339 7238 362 189 14 40 chr15 89554771 89554845 -11825676 - MER51A LTR ERV1 -81 553 482 260 169 17 17 chr15 89554849 89554908 -11825613 - L1MC4 LINE L1 -1027 7015 6957 235 236 155 34 chr15 89554958 89554974 -11825547 - L1MA10 LINE L1 0 6334 6319 2536 191 126 21 chr15 89554974 89555254 -11825267 - L1ME1 LINE L1 -6 6160 5911 1673 189 61 48 chr15 89555254 89555715 -11824806 - MLT1C LTR MaLR 0 467 1 2536 191 126 21 chr15 89555715 89556046 -11824475 - L1ME1 LINE L1 -255 5911 5485 3231 138 22 62 chr15 89556061 89556657 -11823864 - L1MB2 LINE L1 -7 6164 5593 1199 106 0 0 chr15 89556657 89556818 -11823703 - AluSg/x SINE Alu -18 292 132 2519 68 0 3 chr15 89556818 89557128 -11823393 - AluY SINE Alu -2 309 1 2859 179 41 80 chr15 89557128 89557873 -11822648 - L1ME1 LINE L1 -817 5329 4619 2407 77 0 3 chr15 89557873 89558173 -11822348 - AluY SINE Alu -12 299 1 2859 179 41 80 chr15 89558173 89558260 -11822261 - L1ME1 LINE L1 -1527 4619 4530 1174 127 92 4 chr15 89558362 89558590 -11821931 - L1MA8 LINE L1 -5 6286 6039 1827 135 24 10 chr15 89559140 89559436 -11821085 - AluJb SINE Alu -12 300 1 223 261 14 29 chr15 89559701 89559770 -11820751 - MIR SINE MIR -111 97 30 267 196 0 0 chr15 89559923 89559969 -11820552 - L2 LINE L2 -17 3255 3210 267 31 0 0 chr15 89560533 89560565 -11819956 + (TG)n Simple_repeat Simple_repeat 2 33 0 32 43 0 0 chr15 89560636 89560682 -11819839 + AT_rich Low_complexity Low_complexity 1 46 0 567 133 0 0 chr15 89560740 89560823 -11819698 + AluJ/FLAM SINE Alu 2 84 -228 2259 115 3 3 chr15 89560936 89561248 -11819273 - AluSx SINE Alu 0 312 1 2178 76 69 0 chr15 89561391 89561667 -11818854 + AluSp SINE Alu 1 295 -18 184 267 178 11 chr15 89562365 89562455 -11818066 + MIR SINE MIR 89 193 -69 887 139 0 55 chr15 89562616 89562781 -11817740 - MER3 DNA MER1_type -4 205 50 345 47 0 0 chr15 89563328 89563371 -11817150 + (CA)n Simple_repeat Simple_repeat 2 44 0 201 238 119 30 chr15 89563509 89563610 -11816911 - L2 LINE L2 -14 3258 3149 317 283 51 7 chr15 89563983 89564121 -11816400 + MIR SINE MIR 29 172 -90 785 261 10 0 chr15 89565388 89565591 -11814930 + MIR SINE MIR 36 240 -22 2298 106 3 0 chr15 89565601 89565904 -11814617 - AluSx SINE Alu -8 304 1 347 311 186 0 chr15 89565996 89566163 -11814358 + MIR SINE MIR 23 220 -42 21 0 0 0 chr15 89566289 89566310 -11814211 + AT_rich Low_complexity Low_complexity 1 21 0 2230 125 3 3 chr15 89566907 89567219 -11813302 - AluSx SINE Alu 0 312 1 357 252 41 0 chr15 89567302 89567425 -11813096 - L1ME4a LINE L1 -1 6120 5993 535 286 116 12 chr15 89567438 89567774 -11812747 - L1ME4a LINE L1 -182 5939 5569 1419 226 118 57 chr15 89569456 89570142 -11810379 + L2 LINE L2 2404 3170 -143 2328 92 0 0 chr15 89570142 89570437 -11810084 - AluSx SINE Alu -17 295 1 1419 226 118 57 chr15 89570437 89570591 -11809930 + L2 LINE L2 3170 3313 0 613 208 15 0 chr15 89570608 89570738 -11809783 - MIR SINE MIR -40 222 91 273 274 109 15 chr15 89570912 89570987 -11809534 - L1P5 LINE L1 -687 5464 5397 1609 169 0 66 chr15 89570987 89571328 -11809193 - AluJb SINE Alu 0 312 1 273 274 109 15 chr15 89571328 89571443 -11809078 - L1P5 LINE L1 -754 5397 5258 669 259 31 1 chr15 89572407 89572606 -11807915 + MIR SINE MIR 51 253 -9 469 228 168 7 chr15 89573683 89573832 -11806689 - MIR SINE MIR -71 191 19 2067 151 0 0 chr15 89574509 89574820 -11805701 + AluSx SINE Alu 1 311 -1 227 353 48 12 chr15 89575002 89575169 -11805352 - MIR3 SINE MIR -7 201 29 197 108 27 0 chr15 89575243 89575280 -11805241 + CT-rich Low_complexity Low_complexity 3 40 0 585 272 64 38 chr15 89575348 89575583 -11804938 - MIR SINE MIR -10 252 12 732 264 25 33 chr15 89576206 89576290 -11804231 + MIR SINE MIR 21 104 -158 252 0 0 0 chr15 89576290 89576318 -11804203 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 2167 77 7 25 chr15 89576320 89576605 -11803916 - AluSp SINE Alu -33 280 1 732 264 25 33 chr15 89576605 89576759 -11803762 + MIR SINE MIR 105 260 -2 13630 110 58 70 chr15 89576854 89577627 -11802894 + Tigger1 DNA MER2_type 1 782 -1636 2110 140 0 7 chr15 89577627 89577935 -11802586 + AluSx SINE Alu 3 308 -4 13630 110 58 70 chr15 89577935 89578069 -11802452 + Tigger1 DNA MER2_type 782 916 -1502 2310 120 0 0 chr15 89578069 89578370 -11802151 - AluSx SINE Alu -11 301 1 13630 110 58 70 chr15 89578370 89578764 -11801757 + Tigger1 DNA MER2_type 916 1313 -1105 2245 101 0 3 chr15 89578764 89579092 -11801429 + AluSq SINE Alu 1 327 0 13630 110 58 70 chr15 89579092 89579735 -11800786 + Tigger1 DNA MER2_type 1313 1962 -456 1982 126 7 0 chr15 89579735 89580004 -11800517 - AluSx SINE Alu -19 293 23 13630 110 58 70 chr15 89580004 89580369 -11800152 + Tigger1 DNA MER2_type 1962 2330 -88 1708 173 0 45 chr15 89580369 89580681 -11799840 - AluJo SINE Alu -14 298 1 13630 110 58 70 chr15 89580681 89580694 -11799827 + Tigger1 DNA MER2_type 2330 2342 -76 2249 117 3 0 chr15 89580694 89580993 -11799528 - AluSq SINE Alu -13 300 1 13630 110 58 70 chr15 89580993 89581111 -11799410 + Tigger1 DNA MER2_type 2342 2418 0 1218 205 5 0 chr15 89581146 89581361 -11799160 - AluJo SINE Alu -11 301 86 310 321 65 12 chr15 89581361 89581529 -11798992 + L1MC4a LINE L1 5556 5732 -389 484 109 0 0 chr15 89582193 89582257 -11798264 + AluS SINE Alu 13 76 -236 22 0 0 0 chr15 89582623 89582645 -11797876 + AT_rich Low_complexity Low_complexity 1 22 0 731 273 107 72 chr15 89582650 89583157 -11797364 - L2 LINE L2 -8 3264 2740 2334 114 0 0 chr15 89583446 89583745 -11796776 + AluSx SINE Alu 1 299 -13 867 306 39 22 chr15 89583756 89584112 -11796409 - L1MC4a LINE L1 -1941 5867 5506 2336 112 0 0 chr15 89584136 89584439 -11796082 - AluSx SINE Alu -9 303 1 1733 122 27 14 chr15 89584460 89584756 -11795765 - L1MB2 LINE L1 -7 6164 5865 580 179 9 9 chr15 89584758 89584864 -11795657 - MLT1E LTR MaLR -484 109 4 1671 275 60 60 chr15 89585407 89585759 -11794762 - L1MC4a LINE L1 -755 5391 5041 2294 79 0 4 chr15 89585759 89586058 -11794463 + AluSc SINE Alu 1 298 0 1671 275 60 60 chr15 89586058 89586630 -11793891 - L1MC4a LINE L1 -1105 5041 5102 2154 121 0 3 chr15 89586630 89586927 -11793594 + AluSq SINE Alu 1 296 -17 1671 275 60 60 chr15 89586927 89587389 -11793132 - L1MC4a LINE L1 -1043 5103 4643 872 288 166 50 chr15 89587485 89587685 -11792836 - L2 LINE L2 -572 2742 2567 770 192 0 0 chr15 89587685 89587815 -11792706 + FLAM_A SINE Alu 1 130 -3 872 288 166 50 chr15 89587815 89588422 -11792099 - L2 LINE L2 -747 2567 1841 355 255 11 109 chr15 89588580 89588764 -11791757 - AluJb SINE Alu 0 302 137 278 188 31 0 chr15 89589046 89589110 -11791411 + L1MC4a LINE L1 5870 5935 -1873 * 2009 116 64 9 chr15 89589107 89589436 -11791085 + L1MA4 LINE L1 5676 6022 -278 648 143 0 34 chr15 89589441 89589560 -11790961 - AluSg/x SINE Alu -8 301 187 247 234 64 32 chr15 89590011 89590105 -11790416 - MIR SINE MIR -50 212 116 1559 132 159 0 chr15 89590203 89590461 -11790060 - AluSx SINE Alu -3 299 1 1807 159 0 32 chr15 89590752 89591066 -11789455 - AluJo SINE Alu -8 304 1 900 152 0 0 chr15 89591084 89591222 -11789299 - AluJo SINE Alu -174 138 1 1599 148 80 4 chr15 89591343 89591607 -11788914 + AluSx SINE Alu 7 290 -22 276 217 50 0 chr15 89591609 89591669 -11788852 - L1MC4 LINE L1 -593 7449 7387 712 125 62 0 chr15 89592061 89592189 -11788332 + L1MA9 LINE L1 6173 6308 -4 297 292 163 43 chr15 89592580 89592675 -11787846 - Charlie8 DNA MER1_type -2173 244 162 2493 73 0 7 chr15 89592675 89592978 -11787543 + AluSx SINE Alu 5 305 -7 297 292 163 43 chr15 89592978 89593091 -11787430 - Charlie8 DNA MER1_type -2255 162 11 323 254 113 7 chr15 89594432 89594574 -11785947 - MIR SINE MIR -7 255 99 2380 66 38 0 chr15 89595093 89595381 -11785140 + AluY SINE Alu 1 299 -12 329 298 72 65 chr15 89595595 89595887 -11784634 - L2 LINE L2 0 3272 2979 599 231 41 7 chr15 89595889 89596036 -11784485 - L2 LINE L2 -5 3267 3116 211 289 18 61 chr15 89596058 89596172 -11784349 - L2 LINE L2 -268 3004 2896 447 225 120 0 chr15 89597360 89597502 -11783019 - MER103 DNA DNA -5 161 3 303 351 53 27 chr15 89598339 89598638 -11781883 - L2 LINE L2 -831 2483 2177 389 241 149 48 chr15 89600302 89600530 -11779991 + MIR SINE MIR 2 252 -10 2234 83 3 30 chr15 89601174 89601474 -11779047 + AluSp SINE Alu 2 293 -20 369 275 190 34 chr15 89601542 89601811 -11778710 - MLT1K LTR MaLR -122 466 156 787 138 0 8 chr15 89602330 89602455 -11778066 + FAM SINE Alu 1 69 0 240 0 32 0 chr15 89602455 89602486 -11778035 + (CAA)n Simple_repeat Simple_repeat 2 180 0 2241 122 0 0 chr15 89602497 89602792 -11777729 + AluSc SINE Alu 1 295 -14 2616 56 0 0 chr15 89602965 89603269 -11777252 + AluY SINE Alu 1 304 -7 183 251 150 60 chr15 89603980 89604147 -11776374 - MIR3 SINE MIR -9 199 18 585 250 110 31 chr15 89604393 89604585 -11775936 + MIR SINE MIR 7 208 -54 283 294 183 33 chr15 89604595 89604775 -11775746 - MIR SINE MIR -3 259 53 1710 156 38 7 chr15 89604782 89605070 -11775451 + AluJb SINE Alu 1 297 -15 329 260 133 53 chr15 89605085 89605370 -11775151 - L1MC5 LINE L1 -50 7911 7604 209 189 19 57 chr15 89605420 89605473 -11775048 - MIR SINE MIR -142 66 16 682 169 138 42 chr15 89605722 89605775 -11774746 - Charlie1 DNA MER1_type -1 2760 2713 2158 122 30 0 chr15 89605775 89606079 -11774442 + AluSq SINE Alu 1 313 0 2393 106 0 0 chr15 89606081 89606393 -11774128 + AluSx SINE Alu 1 312 0 682 169 138 42 chr15 89606393 89606597 -11773924 - Charlie1 DNA MER1_type -48 2713 2475 445 309 26 0 chr15 89606595 89606771 -11773750 - Charlie1 DNA MER1_type -302 2459 37 * 223 328 0 0 chr15 89607543 89607601 -11772920 + L2 LINE L2 2619 2676 -638 337 309 70 60 chr15 89608033 89608530 -11771991 + L2 LINE L2 2704 3240 -32 531 363 48 15 chr15 89611366 89611699 -11768822 + L2 LINE L2 2403 2746 -568 574 145 0 15 chr15 89611781 89611912 -11768609 + (TCC)n Simple_repeat Simple_repeat 2 130 0 415 242 358 16 chr15 89611965 89612155 -11768366 + MIR SINE MIR 5 259 -3 204 167 42 21 chr15 89612196 89612244 -11768277 + L2 LINE L2 3019 3067 -205 434 310 6 47 chr15 89612660 89612718 -11767803 + MER5A DNA MER1_type 13 72 -117 2351 107 0 3 chr15 89612718 89613028 -11767493 + AluSx SINE Alu 1 309 -3 434 310 6 47 chr15 89613028 89613140 -11767381 + MER5A DNA MER1_type 72 176 -13 243 183 122 73 chr15 89613322 89613404 -11767117 + L2 LINE L2 3184 3269 -3 2325 98 3 0 chr15 89614600 89614897 -11765624 + AluSx SINE Alu 1 298 -14 237 139 0 0 chr15 89614897 89614940 -11765581 + (TTAA)n Simple_repeat Simple_repeat 2 44 0 21 36 0 0 chr15 89615186 89615214 -11765307 + AT_rich Low_complexity Low_complexity 1 28 0 1679 104 0 29 chr15 89615666 89615907 -11764614 - AluSc SINE Alu 0 309 76 2010 163 0 3 chr15 89617336 89617649 -11762872 - AluJb SINE Alu 0 312 1 23 0 0 0 chr15 89618019 89618042 -11762479 + AT_rich Low_complexity Low_complexity 1 23 0 2223 85 14 3 chr15 89618996 89619279 -11761242 + AluSq SINE Alu 3 288 -25 567 99 0 0 chr15 89620045 89620136 -11760385 + L1MB3 LINE L1 6092 6182 -1 2208 140 0 0 chr15 89621129 89621436 -11759085 - AluSx SINE Alu -5 307 1 652 153 110 34 chr15 89621438 89621556 -11758965 - AluJo/FLAM SINE Alu -175 127 1 397 299 116 6 chr15 89621655 89621819 -11758702 - L2 LINE L2 -14 3299 3118 382 229 102 8 chr15 89621894 89622012 -11758509 - L2 LINE L2 -343 2971 2843 2440 106 0 0 chr15 89622382 89622694 -11757827 + AluSx SINE Alu 1 312 0 314 232 68 116 chr15 89623163 89623353 -11757168 + L2 LINE L2 2302 2482 -832 330 291 105 49 chr15 89623599 89623884 -11756637 + L2 LINE L2 2825 3125 -147 1408 251 98 8 chr15 89624624 89625023 -11755498 + MER115 DNA AcHobo 259 693 0 220 263 50 38 chr15 89625047 89625127 -11755394 + L2 LINE L2 3189 3269 -3 2321 98 0 10 chr15 89626425 89626720 -11753801 - AluSx SINE Alu -12 300 9 264 273 78 23 chr15 89626907 89627035 -11753486 - MARNA DNA Mariner -54 532 398 1957 71 28 8 chr15 89627430 89627685 -11752836 - AluY SINE Alu -7 304 45 1285 95 0 0 chr15 89627785 89627973 -11752548 + AluY SINE Alu 130 317 0 326 213 75 53 chr15 89628162 89628256 -11752265 - L2 LINE L2 -19 3253 3158 1957 161 3 3 chr15 89629445 89629744 -11750777 - AluJb SINE Alu -13 299 1 21 36 0 0 chr15 89629744 89629772 -11750749 + AT_rich Low_complexity Low_complexity 1 28 0 1109 152 11 0 chr15 89630169 89630347 -11750174 + AluJb SINE Alu 117 296 -16 1340 146 6 139 chr15 89630651 89630832 -11749689 - AluJo SINE Alu -38 274 151 1955 142 13 28 chr15 89630832 89631149 -11749372 + AluSx SINE Alu 1 312 0 1340 146 6 139 chr15 89631149 89631283 -11749238 - AluJo SINE Alu -161 151 1 1400 147 0 40 chr15 89631287 89631512 -11749009 - AluJb SINE Alu -14 298 83 22 56 0 0 chr15 89631658 89631694 -11748827 + AT_rich Low_complexity Low_complexity 1 36 0 642 204 8 30 chr15 89631701 89631833 -11748688 + FLAM_A SINE Alu 1 129 -4 862 225 77 89 chr15 89631845 89631995 -11748526 - HAL1 LINE L1 -13 2494 2344 2135 129 3 0 chr15 89631995 89632289 -11748232 - AluSx SINE Alu -17 295 1 862 225 77 89 chr15 89632289 89632697 -11747824 - HAL1 LINE L1 -163 2344 1943 1992 211 111 33 chr15 89632702 89633393 -11747128 - HAL1 LINE L1 -802 1705 961 255 263 45 30 chr15 89633397 89633503 -11747018 - L1MC5 LINE L1 -22 7939 7829 2255 96 3 7 chr15 89633503 89633794 -11746727 - AluSx SINE Alu -17 295 6 255 263 45 30 chr15 89633794 89633820 -11746701 - L1MC5 LINE L1 -132 7829 7805 361 290 10 0 chr15 89633958 89634058 -11746463 - HAL1 LINE L1 -1604 903 803 1364 268 74 65 chr15 89634618 89634749 -11745772 - HAL1 LINE L1 -1690 817 689 2400 90 0 0 chr15 89634749 89635039 -11745482 + AluSx SINE Alu 1 290 -22 1364 268 74 65 chr15 89635039 89635192 -11745329 - HAL1 LINE L1 -1818 689 539 8427 27 6 3 chr15 89635192 89636955 -11743566 + L1PA4 LINE L1 4389 6154 -1 1364 268 74 65 chr15 89636955 89637374 -11743147 - HAL1 LINE L1 -1968 539 107 2185 146 0 0 chr15 89638834 89639136 -11741385 - AluSx SINE Alu -10 302 1 204 254 15 46 chr15 89639371 89639501 -11741020 + CT-rich Low_complexity Low_complexity 4 129 0 1301 183 167 0 chr15 89639767 89640019 -11740502 + AluSx SINE Alu 1 294 -8 195 363 66 0 chr15 89640040 89640131 -11740390 - L2 LINE L2 -55 3217 3121 2002 92 20 61 chr15 89640158 89640452 -11740069 + AluY SINE Alu 1 282 -29 26 0 0 0 chr15 89640464 89640490 -11740031 + AT_rich Low_complexity Low_complexity 1 26 0 1782 168 34 7 chr15 89640807 89641104 -11739417 + AluJb SINE Alu 1 305 -7 2077 85 53 11 chr15 89641819 89642102 -11738419 + AluY SINE Alu 1 295 -16 363 222 65 19 chr15 89643478 89643586 -11736935 + L2 LINE L2 3174 3286 -27 294 291 165 0 chr15 89647168 89647271 -11733250 + L2 LINE L2 3134 3253 -19 247 140 0 75 chr15 89647434 89647541 -11732980 + (TCC)n Simple_repeat Simple_repeat 1 99 0 255 123 0 86 chr15 89647598 89647761 -11732760 + (TCC)n Simple_repeat Simple_repeat 2 150 0 397 206 0 72 chr15 89647766 89647960 -11732561 + CT-rich Low_complexity Low_complexity 1 180 0 860 221 5 0 chr15 89648119 89648309 -11732212 + AluSp SINE Alu 95 285 -28 259 147 10 69 chr15 89649036 89649111 -11731410 + MIR SINE MIR 112 180 -82 2219 111 7 7 chr15 89649275 89649581 -11730940 - AluSg SINE Alu -4 306 1 237 33 0 0 chr15 89649670 89649700 -11730821 + (A)n Simple_repeat Simple_repeat 1 30 0 2126 147 0 0 chr15 89649702 89650001 -11730520 + AluSx SINE Alu 5 303 -9 1124 222 11 15 chr15 89650231 89650492 -11730029 - AluJb SINE Alu -1 311 52 978 182 13 0 chr15 89651286 89651445 -11729076 + AluJb SINE Alu 129 289 -23 2567 60 7 0 chr15 89653129 89653429 -11727092 - AluY SINE Alu -9 302 1 193 325 0 62 chr15 89654189 89654269 -11726252 + L2 LINE L2 3184 3258 -14 661 216 85 35 chr15 89655041 89655240 -11725281 + MIR SINE MIR 27 235 -27 2211 123 3 0 chr15 89655258 89655558 -11724963 - AluSg SINE Alu -9 301 1 287 265 53 68 chr15 89655575 89655707 -11724814 + MIR SINE MIR 74 203 -59 707 161 8 23 chr15 89655734 89655864 -11724657 + FLAM_C SINE Alu 1 128 -5 1057 103 32 0 chr15 89655866 89656022 -11724499 + L1PA11 LINE L1 6011 6171 -3 1120 132 0 24 chr15 89656029 89656196 -11724325 + AluJb SINE Alu 141 303 -9 2168 151 68 32 chr15 89656444 89656678 -11723843 - MSTA LTR MaLR -1 427 170 2249 97 0 17 chr15 89656678 89656978 -11723543 - AluSx SINE Alu -17 295 1 2168 151 68 32 chr15 89656978 89657154 -11723367 - MSTA LTR MaLR -258 170 2 1023 162 125 73 chr15 89658587 89658859 -11721662 + AluSx SINE Alu 3 288 -14 850 86 0 58 chr15 89659829 89659968 -11720553 + FLAM_C SINE Alu 3 133 0 21 57 0 0 chr15 89660930 89660965 -11719556 + GC_rich Low_complexity Low_complexity 1 35 0 215 180 66 16 chr15 89662534 89662595 -11717926 - MER5B DNA MER1_type -4 174 111 2485 88 0 3 chr15 89662595 89662903 -11717618 + AluSg SINE Alu 1 307 -3 1428 129 4 30 chr15 89662982 89663214 -11717307 + AluJb SINE Alu 87 312 0 470 267 98 78 chr15 89663303 89663558 -11716963 + MIR SINE MIR 3 262 0 690 203 8 8 chr15 89663701 89663834 -11716687 - FLAM_C SINE Alu 0 133 1 314 245 15 168 chr15 89666147 89666343 -11714178 + MER5B DNA MER1_type 5 170 -8 506 272 181 3 chr15 89666428 89666737 -11713784 - L1ME3A LINE L1 -220 5950 5587 274 172 0 0 chr15 89666795 89666853 -11713668 - L1ME3A LINE L1 -736 5434 5377 439 179 13 0 chr15 89666859 89666937 -11713584 + AluJ/FLAM SINE Alu 2 80 -232 283 210 118 17 chr15 89666937 89667056 -11713465 - L1ME3A LINE L1 -780 5384 5254 255 239 15 15 chr15 89667133 89667200 -11713321 - MIR SINE MIR -10 252 186 3278 167 64 36 chr15 89667295 89668026 -11712495 - L1MB3 LINE L1 0 6183 5432 1266 177 154 11 chr15 89668027 89668287 -11712234 - AluSg SINE Alu -13 297 1 2342 198 71 70 chr15 89668299 89668550 -11711971 + L1ME1 LINE L1 5316 5565 -601 2311 113 0 0 chr15 89668550 89668843 -11711678 - AluSg SINE Alu -17 293 1 2342 198 71 70 chr15 89668843 89669244 -11711277 + L1ME1 LINE L1 5565 5972 -194 2160 129 7 13 chr15 89669244 89669554 -11710967 + AluSc SINE Alu 1 308 -1 2342 198 71 70 chr15 89669554 89669658 -11710863 + L1ME1 LINE L1 5972 6074 -92 2139 96 43 0 chr15 89669891 89670172 -11710349 + AluSx SINE Alu 1 293 -19 26 50 0 0 chr15 89670312 89670352 -11710169 + AT_rich Low_complexity Low_complexity 1 40 0 1472 115 77 124 chr15 89671724 89672088 -11708433 + MER7A DNA MER2_type 1 345 -1 342 0 0 0 chr15 89674014 89674052 -11706469 + (TA)n Simple_repeat Simple_repeat 2 39 0 757 146 24 0 chr15 89674054 89674177 -11706344 + FLAM_C SINE Alu 1 126 -7 1538 226 91 65 chr15 89674969 89675521 -11705000 + L1ME1 LINE L1 5539 6104 -62 1798 177 14 0 chr15 89675549 89675832 -11704689 - AluJb SINE Alu -25 287 1 27 0 0 0 chr15 89675837 89675864 -11704657 + AT_rich Low_complexity Low_complexity 1 27 0 953 107 43 7 chr15 89675864 89676004 -11704517 + AluSp SINE Alu 36 180 -133 2262 108 0 0 chr15 89676004 89676300 -11704221 + AluSx SINE Alu 9 304 -8 1210 167 24 131 chr15 89676309 89676644 -11703877 + AluYb8 SINE Alu 1 299 -19 2182 107 21 0 chr15 89676712 89677002 -11703519 + AluSp SINE Alu 1 296 -17 3642 184 72 65 chr15 89677357 89678319 -11702202 + LTR5 LTR ERVK 2 969 0 630 238 66 62 chr15 89679280 89679368 -11701153 + MIR SINE MIR 18 104 -158 1959 80 95 4 chr15 89679368 89679632 -11700889 - AluSg SINE Alu -22 288 1 630 238 66 62 chr15 89679632 89679787 -11700734 + MIR SINE MIR 104 262 0 716 117 0 0 chr15 89679851 89679954 -11700567 + MLT1B LTR MaLR 8 110 -280 622 191 9 0 chr15 89679954 89680069 -11700452 + FLAM_C SINE Alu 2 117 -26 1177 166 81 20 chr15 89680081 89680328 -11700193 + MLT1B LTR MaLR 96 357 -33 1712 91 82 0 chr15 89680329 89680560 -11699961 - AluSg SINE Alu -2 308 59 275 86 0 0 chr15 89680562 89680597 -11699924 - AluSg SINE Alu -207 93 59 649 147 0 0 chr15 89680626 89680728 -11699793 - AluSg1 SINE Alu -206 103 2 281 125 0 0 chr15 89680728 89680768 -11699753 + MLT1B LTR MaLR 351 390 0 1856 141 38 0 chr15 89681100 89681391 -11699130 + AluSx SINE Alu 2 303 -9 577 121 44 0 chr15 89681464 89681555 -11698966 - HY3 scRNA scRNA -5 96 2 2443 69 0 16 chr15 89681827 89682130 -11698391 - AluSc SINE Alu -5 304 7 257 339 42 17 chr15 89682203 89682321 -11698200 + MIR3 SINE MIR 67 187 -21 238 250 105 0 chr15 89682321 89682397 -11698124 + MER96 DNA MER1_type? 84 167 -8 * 241 261 29 0 chr15 89682329 89682398 -11698123 - MER96 DNA MER1_type? -97 78 8 748 245 148 51 chr15 89682495 89682720 -11697801 + MLT1J LTR MaLR 3 205 -306 2396 97 0 7 chr15 89682720 89683030 -11697491 + AluSq SINE Alu 1 308 -5 748 245 148 51 chr15 89683030 89683236 -11697285 + MLT1J LTR MaLR 205 476 -35 317 268 14 72 chr15 89683954 89684092 -11696429 + MIR SINE MIR 28 157 -105 524 195 133 0 chr15 89684357 89684470 -11696051 + FLAM_C SINE Alu 1 128 -5 2048 116 51 7 chr15 89684766 89685059 -11695462 - AluSx SINE Alu -6 306 1 1079 131 37 57 chr15 89686446 89686691 -11693830 - L1MB2 LINE L1 -3 6168 5929 2253 114 0 0 chr15 89686720 89687019 -11693502 + AluSg SINE Alu 1 299 -11 2230 136 0 0 chr15 89688472 89688782 -11691739 - AluSx SINE Alu -2 310 1 2113 152 0 0 chr15 89689475 89689784 -11690737 - AluSx SINE Alu -3 309 1 1430 114 0 0 chr15 89689800 89689993 -11690528 - AluSg/x SINE Alu 0 310 118 463 51 0 0 chr15 89690006 89690065 -11690456 - Alu SINE Alu -257 61 3 918 103 0 0 chr15 89690125 89690241 -11690280 - AluSx SINE Alu -197 116 1 1186 222 123 19 chr15 89690272 89690600 -11689921 + L1ME1 LINE L1 5461 5834 -336 1900 97 40 57 chr15 89690600 89690898 -11689623 + AluSx SINE Alu 1 293 -19 1186 222 123 19 chr15 89690898 89690943 -11689578 + L1ME1 LINE L1 5834 5873 -297 24 0 0 0 chr15 89690945 89690969 -11689552 + AT_rich Low_complexity Low_complexity 1 24 0 360 200 182 0 chr15 89690971 89691081 -11689440 + L1ME1 LINE L1 6028 6157 -9 603 209 185 77 chr15 89691165 89691245 -11689276 + L1ME3A LINE L1 5871 5941 -229 1597 182 56 23 chr15 89691245 89691547 -11688974 + AluJo SINE Alu 1 312 0 603 209 185 77 chr15 89691547 89691725 -11688796 + L1ME3A LINE L1 5941 6157 -13 2216 162 75 27 chr15 89693246 89693509 -11687012 + L1MC3 LINE L1 5321 5570 -608 1660 169 38 24 chr15 89693509 89693799 -11686722 - AluJo SINE Alu -18 294 1 2216 162 75 27 chr15 89693799 89694125 -11686396 + L1MC3 LINE L1 5570 5977 -201 369 146 0 0 chr15 89694132 89694187 -11686334 - Alu SINE Alu -14 288 234 228 152 57 38 chr15 89694453 89694558 -11685963 + (CTA)n Simple_repeat Simple_repeat 2 108 0 478 170 3 61 chr15 89695582 89695966 -11684555 + CT-rich Low_complexity Low_complexity 1 361 0 372 147 0 58 chr15 89695987 89696143 -11684378 + (TCC)n Simple_repeat Simple_repeat 3 149 0 2199 106 26 0 chr15 89696256 89696559 -11683962 + AluSx SINE Alu 1 311 -1 3050 155 47 10 chr15 89696841 89697416 -11683105 + MER41B LTR ERV1 2 597 -38 2368 110 0 0 chr15 89697499 89697808 -11682713 - AluSx SINE Alu -3 309 1 182 175 50 0 chr15 89697815 89697855 -11682666 - MIR SINE MIR -58 150 109 1603 261 138 14 chr15 89698214 89698874 -11681647 - HAL1b LINE L1 -7 1341 600 1581 167 145 22 chr15 89699210 89699611 -11680910 + LTR47A LTR ERVL 3 452 0 238 297 14 0 chr15 89699616 89699690 -11680831 + L2 LINE L2 2979 3053 -219 2465 77 0 40 chr15 89700340 89700663 -11679858 - AluY SINE Alu -1 310 1 1302 171 167 0 chr15 89700802 89701054 -11679467 - AluSx SINE Alu -8 294 1 522 259 48 18 chr15 89701832 89701998 -11678523 - MIR SINE MIR -90 172 2 388 184 0 13 chr15 89702032 89702108 -11678413 - MER94 DNA DNA -34 100 26 611 92 0 99 chr15 89702128 89702259 -11678262 - FRAM SINE Alu -4 172 55 2159 123 7 0 chr15 89703756 89704048 -11676473 + AluSx SINE Alu 1 294 -18 1750 146 19 0 chr15 89704653 89704920 -11675601 + AluJo SINE Alu 26 297 -15 2626 62 0 3 chr15 89705132 89705440 -11675081 + AluSp SINE Alu 1 307 -6 473 245 91 49 chr15 89705706 89705992 -11674529 + L1MC/D LINE L1 5297 5594 -2214 1254 48 0 0 chr15 89706003 89706150 -11674371 - AluY SINE Alu -2 309 163 1939 151 0 0 chr15 89706157 89706449 -11674072 - AluJb SINE Alu -20 292 1 624 325 66 17 chr15 89706455 89706839 -11673682 + L1ME LINE L1 5023 5435 -686 2084 120 21 6 chr15 89707022 89707347 -11673174 - MER44D DNA MER2_type -7 602 3 534 231 110 55 chr15 89707822 89708004 -11672517 - L2 LINE L2 -4 3309 3118 2487 83 0 0 chr15 89708015 89708316 -11672205 - AluSg SINE Alu -9 301 1 447 272 155 17 chr15 89708474 89708713 -11671808 + LTR67 LTR ERVL 17 288 -269 410 269 30 22 chr15 89708736 89708870 -11671651 + LTR67 LTR ERVL 423 557 0 587 304 100 16 chr15 89708871 89709310 -11671211 - L2 LINE L2 -125 3188 2716 2136 171 122 13 chr15 89709318 89709787 -11670734 + MLT1F LTR MaLR 1 520 -22 958 149 53 27 chr15 89710704 89710803 -11669718 + MER44D DNA MER2_type 2 97 -2394 255 31 0 0 chr15 89710803 89710835 -11669686 + (GA)n Simple_repeat Simple_repeat 1 32 0 958 149 53 27 chr15 89710835 89710896 -11669625 + MER44D DNA MER2_type 97 155 -2336 2290 114 3 0 chr15 89710896 89711194 -11669327 - AluSx SINE Alu -13 299 1 958 149 53 27 chr15 89711194 89711220 -11669301 + MER44D DNA MER2_type 155 464 -145 268 231 64 26 chr15 89711311 89711389 -11669132 - MERVL LTR ERVL -2164 3321 3241 518 219 110 61 chr15 89711395 89711559 -11668962 + L2 LINE L2 3142 3313 0 387 221 0 0 chr15 89711566 89711634 -11668887 + MLT1F LTR MaLR 63 130 -412 252 0 0 0 chr15 89711965 89711993 -11668528 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2096 102 34 20 chr15 89711995 89712289 -11668232 - AluSx SINE Alu -14 298 1 359 21 21 0 chr15 89713045 89713093 -11667428 + (CA)n Simple_repeat Simple_repeat 1 49 0 601 207 0 33 chr15 89713098 89713219 -11667302 + L2 LINE L2 3197 3313 0 373 287 37 88 chr15 89713317 89713334 -11667187 + HAL1b LINE L1 338 354 -994 2160 111 24 0 chr15 89713334 89713631 -11666890 + AluSq SINE Alu 1 304 -9 373 287 37 88 chr15 89713631 89713885 -11666636 + HAL1b LINE L1 354 595 -753 1863 147 34 0 chr15 89713923 89714040 -11666481 + AluJb SINE Alu 1 113 -199 282 29 0 0 chr15 89714040 89714075 -11666446 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 1863 147 34 0 chr15 89714075 89714250 -11666271 + AluJb SINE Alu 113 303 -9 1979 128 45 0 chr15 89715114 89715404 -11665117 - AluJo SINE Alu -9 303 1 27 0 0 0 chr15 89715496 89715523 -11664998 + AT_rich Low_complexity Low_complexity 1 27 0 1729 128 105 8 chr15 89715788 89716054 -11664467 + AluSx SINE Alu 3 294 -18 1348 126 105 28 chr15 89716683 89716968 -11663553 + L1MC1 LINE L1 6027 6333 0 1691 139 96 7 chr15 89716976 89717257 -11663264 + AluJo SINE Alu 1 306 -6 2033 138 0 3 chr15 89717262 89717575 -11662946 + AluSq SINE Alu 1 312 0 196 229 42 0 chr15 89718045 89718093 -11662428 + L2 LINE L2 492 541 -2773 1458 123 0 23 chr15 89718198 89718418 -11662103 - AluJb SINE Alu -11 301 87 180 0 0 0 chr15 89718610 89718630 -11661891 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1842 142 7 7 chr15 89718648 89718930 -11661591 - AluJo SINE Alu -30 282 1 407 219 33 112 chr15 89719137 89719349 -11661172 - HAL1 LINE L1 -155 2352 2160 2259 100 0 3 chr15 89719349 89719648 -11660873 - AluSg SINE Alu -12 298 1 407 219 33 112 chr15 89719648 89719677 -11660844 - HAL1 LINE L1 -347 2160 2130 2215 104 3 3 chr15 89720156 89720453 -11660068 + AluSp SINE Alu 1 297 -16 191 237 51 34 chr15 89720458 89720517 -11660004 - L2 LINE L2 -932 2382 2323 38 22 0 0 chr15 89720568 89720613 -11659908 + AT_rich Low_complexity Low_complexity 1 45 0 181 347 116 0 chr15 89721232 89721353 -11659168 - L2 LINE L2 -1276 2038 1904 1248 219 59 34 chr15 89721394 89721750 -11658771 + MLT1A1 LTR MaLR 1 365 0 1835 141 27 20 chr15 89722181 89722479 -11658042 - AluJb SINE Alu -2 310 11 783 59 0 0 chr15 89722840 89722941 -11657580 + (TTCC)n Simple_repeat Simple_repeat 2 102 0 2048 109 15 0 chr15 89722943 89723217 -11657304 - AluSx SINE Alu -34 278 1 855 199 25 0 chr15 89723799 89723960 -11656561 - AluJb SINE Alu -11 301 137 2525 54 3 3 chr15 89724244 89724538 -11655983 + AluSp SINE Alu 1 294 -19 2463 75 0 25 chr15 89725196 89725514 -11655007 - AluY SINE Alu -1 310 1 1702 194 21 41 chr15 89725829 89725857 -11654664 - L1M4 LINE L1 -2618 3528 3501 2097 139 13 13 chr15 89725857 89726159 -11654362 - AluSx SINE Alu -10 302 1 1702 194 21 41 chr15 89726159 89726595 -11653926 - L1M4 LINE L1 -2645 3501 3073 2461 75 3 3 chr15 89726600 89726905 -11653616 - AluSp SINE Alu -8 305 1 355 232 0 0 chr15 89726956 89727038 -11653483 - L1M4 LINE L1 -3060 3086 3005 651 263 23 17 chr15 89727108 89727283 -11653238 + MER5B DNA MER1_type 1 176 -2 305 271 19 37 chr15 89727293 89727400 -11653121 - MER5C DNA MER1_type 0 324 220 271 154 169 31 chr15 89727541 89727606 -11652915 - MER5C DNA MER1_type -250 74 1 2548 74 0 6 chr15 89728019 89728330 -11652191 - AluSq SINE Alu -4 309 1 480 256 217 0 chr15 89728393 89728596 -11651925 - L1MC4 LINE L1 -1025 7017 6771 887 195 30 0 chr15 89728607 89728771 -11651750 - FRAM SINE Alu -7 169 1 2358 87 3 0 chr15 89728840 89729128 -11651393 - AluSg SINE Alu -21 289 1 823 122 233 17 chr15 89729344 89729524 -11650997 - MER20 DNA MER1_type 0 219 1 2303 121 0 0 chr15 89731114 89731412 -11649109 + AluSx SINE Alu 1 298 -14 187 242 189 11 chr15 89731615 89731710 -11648811 + L2 LINE L2 1258 1369 -1945 588 173 31 31 chr15 89731714 89731841 -11648680 - MER20 DNA MER1_type -92 127 1 1543 147 0 0 chr15 89731955 89732173 -11648348 + AluJb SINE Alu 1 218 -94 283 151 0 0 chr15 89732175 89732228 -11648293 + FAM SINE Alu 127 179 0 1226 139 0 0 chr15 89732307 89732480 -11648041 + AluSg/x SINE Alu 128 300 -10 288 143 54 0 chr15 89732497 89732553 -11647968 + L1ME2 LINE L1 5822 5880 -284 792 96 9 17 chr15 89732564 89732679 -11647842 + FLAM_C SINE Alu 3 116 -17 30 27 0 0 chr15 89732679 89732716 -11647805 + AT_rich Low_complexity Low_complexity 1 37 0 2240 120 7 0 chr15 89732926 89733235 -11647286 + AluSq SINE Alu 3 313 0 534 302 60 33 chr15 89733508 89733809 -11646712 + L2 LINE L2 1594 1902 -1412 379 353 153 29 chr15 89734026 89734301 -11646220 - L2 LINE L2 0 3272 2964 2109 139 0 7 chr15 89734412 89734715 -11645806 - AluSx SINE Alu -11 301 1 183 310 187 26 chr15 89734815 89735083 -11645438 + L2 LINE L2 2033 2343 -971 924 204 6 6 chr15 89735139 89735320 -11645201 + AluJo SINE Alu 127 307 -5 286 148 125 23 chr15 89735603 89735691 -11644830 + L1MC5 LINE L1 7830 7926 -35 1996 133 42 21 chr15 89736563 89736900 -11643621 + MER2 DNA MER2_type 1 344 0 350 189 54 0 chr15 89736968 89737042 -11643479 - L1MEc LINE L1 -2874 3341 3264 1824 142 29 7 chr15 89737047 89737328 -11643193 - AluJb SINE Alu -25 287 1 2149 231 25 55 chr15 89737329 89737796 -11642725 - L1MEc LINE L1 -3215 3000 2561 2135 150 66 6 chr15 89737796 89738162 -11642359 + MLT1B LTR MaLR 1 388 -2 2149 231 25 55 chr15 89738162 89738425 -11642096 - L1MEc LINE L1 -3654 2561 2292 2132 150 0 3 chr15 89738425 89738731 -11641790 + AluJb SINE Alu 1 305 -7 1209 228 77 43 chr15 89738765 89739050 -11641471 - L1MEc LINE L1 -4059 2337 2063 2285 89 0 4 chr15 89739050 89739373 -11641148 - AluSc SINE Alu 0 322 1 1209 228 77 43 chr15 89739373 89739502 -11641019 - L1MEc LINE L1 -4333 2063 1940 1945 181 0 7 chr15 89739502 89739806 -11640715 - AluJb SINE Alu -10 302 1 1209 228 77 43 chr15 89739806 89739945 -11640576 - L1MEc LINE L1 -4456 1940 1763 1192 101 11 6 chr15 89739930 89740109 -11640412 - L1MC/D LINE L1 -533 5800 5621 * 369 270 0 9 chr15 89740103 89740214 -11640307 - L1MEc LINE L1 -4647 1749 1640 * 2095 86 26 0 chr15 89740486 89740755 -11639766 + AluSx SINE Alu 1 276 -36 248 0 31 0 chr15 89740759 89740791 -11639730 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 714 236 46 21 chr15 89741146 89741387 -11639134 - LTR16A1 LTR ERVL -2 455 209 2321 100 23 0 chr15 89742054 89742355 -11638166 - AluSq SINE Alu -5 308 1 1932 159 3 3 chr15 89742357 89742659 -11637862 - AluJb SINE Alu -9 303 2 896 132 0 22 chr15 89742865 89743001 -11637520 + FLAM_C SINE Alu 1 133 0 6319 129 38 19 chr15 89743376 89743387 -11637134 - L1MC1 LINE L1 0 6333 6324 2404 108 0 0 chr15 89743387 89743694 -11636827 - AluSx SINE Alu -5 307 1 6319 129 38 19 chr15 89743694 89744658 -11635863 - L1MC1 LINE L1 -9 6324 5320 1892 180 0 10 chr15 89744658 89744964 -11635557 - AluJo SINE Alu -9 303 1 6319 129 38 19 chr15 89744964 89745206 -11635315 - L1MC1 LINE L1 -1013 5320 5084 1666 119 26 0 chr15 89745209 89745435 -11635086 - AluSx SINE Alu -80 232 1 2344 108 0 0 chr15 89745565 89745872 -11634649 + AluSx SINE Alu 1 307 -5 549 269 107 48 chr15 89746109 89746158 -11634363 - LTR33 LTR ERVL -1 520 475 2317 53 74 3 chr15 89746158 89746441 -11634080 - AluY SINE Alu -8 303 1 549 269 107 48 chr15 89746441 89746662 -11633859 - LTR33 LTR ERVL -46 475 234 976 181 0 0 chr15 89746830 89746996 -11633525 + FRAM SINE Alu 1 166 0 1233 139 83 111 chr15 89747002 89747316 -11633205 + AluJb SINE Alu 7 312 0 601 129 20 10 chr15 89747331 89747432 -11633089 + FRAM SINE Alu 63 164 -12 2517 74 0 0 chr15 89747438 89747736 -11632785 + AluY SINE Alu 3 300 -11 483 303 157 14 chr15 89747828 89748185 -11632336 - MLT1L LTR MaLR -189 426 19 1797 151 19 41 chr15 89748256 89748390 -11632131 + AluJb SINE Alu 1 136 -176 2623 50 0 0 chr15 89748390 89748690 -11631831 + AluY SINE Alu 1 300 -11 2097 116 25 0 chr15 89748696 89748981 -11631540 + AluSx SINE Alu 4 295 -17 1797 151 19 41 chr15 89748981 89749158 -11631363 + AluJb SINE Alu 141 312 0 2098 125 7 0 chr15 89749865 89750154 -11630367 + AluSx SINE Alu 1 291 -21 1657 179 27 10 chr15 89750185 89750481 -11630040 + AluJo SINE Alu 1 301 -11 1993 147 10 16 chr15 89750740 89751054 -11629467 + AluSx SINE Alu 1 312 0 983 179 0 17 chr15 89751055 89751251 -11629270 + AluSc SINE Alu 119 311 0 395 170 94 19 chr15 89751251 89751357 -11629164 + HAL1 LINE L1 117 230 -2277 270 81 0 0 chr15 89751394 89751431 -11629090 + (TG)n Simple_repeat Simple_repeat 1 37 0 540 190 162 42 chr15 89751485 89751661 -11628860 - MLT2D LTR ERVL -65 349 141 1542 193 80 17 chr15 89751661 89752013 -11628508 + MLT1A2 LTR MaLR 1 374 0 540 190 162 42 chr15 89752013 89752052 -11628469 - MLT2D LTR ERVL -273 141 108 829 169 0 0 chr15 89752056 89752186 -11628335 - FLAM_C SINE Alu -3 140 11 588 103 65 0 chr15 89752197 89752304 -11628217 - MLT2B1 LTR ERVL -406 114 1 1236 272 103 16 chr15 89752306 89752857 -11627664 + HAL1 LINE L1 265 863 -1644 725 229 32 146 chr15 89752839 89753091 -11627430 - L1MCc LINE L1 -5020 1819 1540 * 2169 115 14 0 chr15 89753091 89753386 -11627135 - AluSx SINE Alu -3 309 11 725 229 32 146 chr15 89753386 89753434 -11627087 - L1MCc LINE L1 -5299 1540 1488 1813 140 3 58 chr15 89753434 89753742 -11626779 + AluJb SINE Alu 1 291 -21 794 197 0 0 chr15 89753752 89753884 -11626637 + FLAM_A SINE Alu 1 132 -1 725 229 32 146 chr15 89753884 89753915 -11626606 - L1MCc LINE L1 -5361 1478 1445 2380 90 0 3 chr15 89753915 89754216 -11626305 - AluSq SINE Alu -13 300 1 725 229 32 146 chr15 89754216 89754452 -11626069 - L1MCc LINE L1 -5394 1445 1311 2103 143 0 0 chr15 89754916 89755223 -11625298 + AluJb SINE Alu 1 307 -5 1918 143 6 13 chr15 89755257 89755571 -11624950 - AluJo SINE Alu 0 312 1 765 145 48 0 chr15 89756202 89756326 -11624195 + FLAM_C SINE Alu 2 131 -12 1788 151 10 24 chr15 89756607 89756898 -11623623 + AluJo SINE Alu 1 287 -25 356 313 87 13 chr15 89756899 89757049 -11623472 - MIR SINE MIR -2 260 100 21 0 0 0 chr15 89757167 89757188 -11623333 + AT_rich Low_complexity Low_complexity 1 21 0 2189 120 0 3 chr15 89757335 89757635 -11622886 - AluSx SINE Alu -13 299 1 288 277 52 65 chr15 89757641 89757796 -11622725 - L1MCc LINE L1 -5095 1328 1176 1700 115 83 4 chr15 89758232 89758485 -11622036 + AluSg SINE Alu 1 273 -37 806 142 31 0 chr15 89758923 89759050 -11621471 + FLAM_C SINE Alu 1 131 -12 1868 142 46 0 chr15 89759136 89759418 -11621103 - AluSx SINE Alu -17 295 1 922 256 113 41 chr15 89759616 89760006 -11620515 - MLT1K LTR MaLR -55 533 116 1357 220 68 33 chr15 89760289 89760684 -11619837 + MER74B LTR ERVL 204 612 -10 339 213 0 0 chr15 89760976 89761056 -11619465 + CT-rich Low_complexity Low_complexity 3 82 0 1720 181 73 66 chr15 89761156 89761537 -11618984 - L1MB4 LINE L1 -1 6179 5781 2354 96 0 7 chr15 89761537 89761840 -11618681 - AluSx SINE Alu -11 301 1 1720 181 73 66 chr15 89761840 89761927 -11618594 - L1MB4 LINE L1 -399 5781 5696 2433 73 3 0 chr15 89761936 89762238 -11618283 - AluY SINE Alu -8 303 1 598 138 23 0 chr15 89762956 89763043 -11617478 - AluSg/x SINE Alu -16 293 205 1925 151 0 22 chr15 89763115 89763432 -11617089 + AluSx SINE Alu 1 310 -2 26 74 0 0 chr15 89763454 89763508 -11617013 + AT_rich Low_complexity Low_complexity 1 54 0 2461 60 0 10 chr15 89763614 89763916 -11616605 - AluY SINE Alu -12 299 1 326 220 90 20 chr15 89763917 89764017 -11616504 - L1ME3 LINE L1 -256 5906 5800 2134 130 0 3 chr15 89764066 89764367 -11616154 + AluSx SINE Alu 1 300 -12 834 177 138 83 chr15 89764409 89764525 -11615996 + LTR37A LTR ERV1 46 154 -272 2255 102 3 3 chr15 89764525 89764830 -11615691 + AluSx SINE Alu 1 305 -7 834 177 138 83 chr15 89764830 89765074 -11615447 + LTR37A LTR ERV1 154 426 0 1461 215 98 6 chr15 89765074 89765476 -11615045 - L1ME3 LINE L1 -357 5805 5373 2860 136 49 6 chr15 89765510 89765981 -11614540 + L1MB4 LINE L1 5682 6172 -8 267 215 0 0 chr15 89765991 89766056 -11614465 + GA-rich Low_complexity Low_complexity 2 66 0 286 183 33 0 chr15 89766065 89766125 -11614396 + Charlie8 DNA MER1_type 152 213 -2204 256 333 11 0 chr15 89766924 89767011 -11613510 - MIR SINE MIR -72 136 49 303 317 87 43 chr15 89767174 89767243 -11613278 - MIR SINE MIR -15 247 182 620 274 60 24 chr15 89767243 89767495 -11613026 + MIR SINE MIR 2 262 0 303 317 87 43 chr15 89767495 89767655 -11612866 - MIR SINE MIR -80 182 8 2465 60 7 0 chr15 89768290 89768592 -11611929 - AluY SINE Alu -7 304 1 1751 147 26 0 chr15 89768623 89768896 -11611625 + AluSx SINE Alu 1 280 -32 30 59 0 0 chr15 89769016 89769067 -11611454 + AT_rich Low_complexity Low_complexity 1 51 0 230 280 43 11 chr15 89769419 89769512 -11611009 - LTR11 LTR ERV -171 513 418 311 243 43 0 chr15 89769517 89769587 -11610934 + L2 LINE L2 3195 3267 -5 183 80 0 0 chr15 89769922 89769947 -11610574 + (T)n Simple_repeat Simple_repeat 1 25 0 887 159 99 107 chr15 89769954 89770187 -11610334 - AluJb SINE Alu -81 231 1 856 154 7 0 chr15 89770215 89770351 -11610170 + FLAM_C SINE Alu 1 137 -6 2176 119 16 0 chr15 89770623 89770926 -11609595 - AluSq SINE Alu -5 308 1 21 36 0 0 chr15 89770926 89770954 -11609567 + AT_rich Low_complexity Low_complexity 1 28 0 2257 99 3 0 chr15 89770954 89771246 -11609275 + AluSg SINE Alu 1 293 -17 1931 102 3 77 chr15 89771319 89771421 -11609100 + AluSx SINE Alu 15 123 -189 2321 83 0 0 chr15 89771421 89771710 -11608811 - AluY SINE Alu -21 290 2 1931 102 3 77 chr15 89771710 89771920 -11608601 + AluSx SINE Alu 123 304 -8 291 250 54 89 chr15 89772031 89772143 -11608378 - L1ME3A LINE L1 -97 6073 5966 2300 88 0 3 chr15 89772148 89772444 -11608077 - AluSq SINE Alu -18 295 1 417 218 64 16 chr15 89772512 89772666 -11607855 - L1ME3A LINE L1 -206 5956 5800 1730 179 7 3 chr15 89772674 89772965 -11607556 + AluJo SINE Alu 1 292 -20 1467 184 60 16 chr15 89772985 89773320 -11607201 - L1MB1 LINE L1 -34 6134 5790 1882 151 0 0 chr15 89773320 89773604 -11606917 - AluJo SINE Alu -17 295 12 247 146 62 0 chr15 89773616 89773664 -11606857 - L1M3 LINE L1 -506 5828 5778 1182 228 188 55 chr15 89773716 89774210 -11606311 - MER21B LTR ERV1 -74 857 214 2118 134 0 0 chr15 89774213 89774511 -11606010 - AluSx SINE Alu -14 298 1 534 250 125 21 chr15 89774542 89774782 -11605739 - L1M3 LINE L1 -533 5631 5367 2340 45 0 58 chr15 89774801 89775113 -11605408 - AluY SINE Alu -17 294 1 271 261 0 0 chr15 89775159 89775228 -11605293 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 5812 104 35 15 chr15 89775307 89775561 -11604960 - L1MA5A LINE L1 -2 6295 6048 2404 104 3 0 chr15 89775561 89775870 -11604651 - AluSp SINE Alu -3 310 1 5812 104 35 15 chr15 89775870 89776471 -11604050 - L1MA5A LINE L1 -249 6048 5423 916 146 0 7 chr15 89776479 89776616 -11603905 - AluJo SINE Alu -176 136 1 1513 246 146 29 chr15 89776698 89777178 -11603343 + MER68 LTR ERV1 1 536 -26 664 232 86 49 chr15 89777198 89777341 -11603180 - L1M3 LINE L1 -1526 4620 4484 1956 158 7 0 chr15 89777341 89777638 -11602883 - AluJb SINE Alu -13 299 1 664 232 86 49 chr15 89777638 89777698 -11602823 - L1M3 LINE L1 -1662 4484 4428 2148 113 0 39 chr15 89777698 89778008 -11602513 - AluSx SINE Alu -14 298 1 664 232 86 49 chr15 89778008 89778130 -11602391 - L1M3 LINE L1 -1718 4428 4282 474 108 0 0 chr15 89778135 89778200 -11602321 - MLT1D LTR MaLR 0 626 562 763 181 0 8 chr15 89778201 89778328 -11602193 + FLAM_C SINE Alu 2 127 -16 2206 122 0 0 chr15 89778337 89778640 -11601881 + AluSq SINE Alu 8 310 -3 1773 199 39 42 chr15 89778644 89779076 -11601445 - MLT1D LTR MaLR -54 451 21 2399 82 0 31 chr15 89779137 89779456 -11601065 - AluSg SINE Alu -1 309 1 1992 275 61 51 chr15 89779459 89779748 -11600773 - L1M3 LINE L1 -1875 4271 3986 2155 120 7 0 chr15 89779748 89780047 -11600474 - AluSg SINE Alu -8 302 2 1992 275 61 51 chr15 89780047 89780236 -11600285 - L1M3 LINE L1 -2160 3986 3800 1670 192 26 3 chr15 89780236 89780538 -11599983 - AluJb SINE Alu 0 312 4 1992 275 61 51 chr15 89780538 89781030 -11599491 - L1M3 LINE L1 -2346 3800 3291 37 62 0 0 chr15 89781079 89781144 -11599377 + AT_rich Low_complexity Low_complexity 1 65 0 1046 121 0 0 chr15 89781161 89781302 -11599219 - AluJb SINE Alu -171 141 1 273 281 30 15 chr15 89781439 89781574 -11598947 - L1M3 LINE L1 -3203 2943 2807 525 293 106 51 chr15 89781618 89782116 -11598405 + L1MC4a LINE L1 2674 3143 -3003 2206 101 7 7 chr15 89782116 89782414 -11598107 + AluY SINE Alu 1 298 -13 525 293 106 51 chr15 89782414 89782831 -11597690 + L1MC4a LINE L1 3143 3639 -2507 777 247 69 21 chr15 89782946 89783237 -11597284 - L1ME2 LINE L1 0 6164 5860 984 282 97 87 chr15 89783298 89783592 -11596929 + L1MC4a LINE L1 3688 3978 -2168 2270 111 0 0 chr15 89783592 89783890 -11596631 - AluSx SINE Alu -14 298 1 984 282 97 87 chr15 89783890 89783999 -11596522 + L1MC4a LINE L1 3978 4084 -2062 333 0 0 0 chr15 89783999 89784036 -11596485 + (GA)n Simple_repeat Simple_repeat 2 38 0 984 282 97 87 chr15 89784036 89784539 -11595982 + L1MC4a LINE L1 4084 4581 -1565 450 0 0 0 chr15 89784539 89784589 -11595932 + (TA)n Simple_repeat Simple_repeat 2 51 0 984 282 97 87 chr15 89784589 89785223 -11595298 + L1MC4a LINE L1 4581 5262 -884 3011 230 157 25 chr15 89785230 89785572 -11594949 + L1MC4a LINE L1 5284 5579 -2229 1767 148 36 16 chr15 89785572 89785876 -11594645 - AluJo SINE Alu -2 310 1 3011 230 157 25 chr15 89785876 89786582 -11593939 + L1MC4a LINE L1 5579 6471 -1337 946 277 98 0 chr15 89786578 89786896 -11593625 + L1MC4 LINE L1 6604 6952 -1090 * 2693 219 35 1 chr15 89786892 89787585 -11592936 + L1 LINE L1 2885 3600 -2546 2578 136 103 50 chr15 89787591 89787635 -11592886 + L1MB3 LINE L1 5237 5277 -906 1479 150 45 12 chr15 89787635 89787921 -11592600 + AluJb SINE Alu 30 323 0 2578 136 103 50 chr15 89787921 89788429 -11592092 + L1MB3 LINE L1 5277 5825 -358 2163 99 0 24 chr15 89788431 89788724 -11591797 + AluSg SINE Alu 1 286 -24 578 202 0 0 chr15 89788746 89788845 -11591676 + FRAM SINE Alu 1 98 -78 689 142 3 16 chr15 89788850 89788973 -11591548 + L1MB3 LINE L1 5822 5944 -207 2036 138 7 3 chr15 89789086 89789382 -11591139 - AluJb SINE Alu -15 297 1 3303 182 37 25 chr15 89789384 89789942 -11590579 - L1MB7 LINE L1 -7 6177 5608 2590 115 25 3 chr15 89789942 89790298 -11590223 + THE1B LTR MaLR 1 364 0 3303 182 37 25 chr15 89790298 89790444 -11590077 - L1MB7 LINE L1 -576 5608 5465 478 50 25 75 chr15 89790446 89790526 -11589995 - L1MB7 LINE L1 0 6184 6109 411 231 83 25 chr15 89790527 89790648 -11589873 - L1MEd LINE L1 -4759 1962 1835 767 221 42 37 chr15 89790665 89790908 -11589613 - L1MEd LINE L1 -4850 1690 1450 311 56 0 0 chr15 89790922 89790958 -11589563 - LTR40a LTR ERVL -1 518 483 1852 147 17 7 chr15 89791953 89792253 -11588268 - AluJb SINE Alu -9 303 1 1702 121 86 7 chr15 89792316 89792596 -11587925 - AluJo SINE Alu -10 302 1 1084 128 0 0 chr15 89792854 89793002 -11587519 - FAM SINE Alu -18 167 20 2193 103 4 0 chr15 89793680 89793987 -11586534 - AluSc SINE Alu 0 308 1 861 191 46 124 chr15 89794042 89794085 -11586436 + L1MC4 LINE L1 6696 6741 -1274 1839 134 30 7 chr15 89794085 89794383 -11586138 + AluJb SINE Alu 1 305 -7 861 191 46 124 chr15 89794383 89794685 -11585836 + L1MC4 LINE L1 6741 7068 -947 323 215 43 21 chr15 89794686 89794726 -11585795 - L1PB4 LINE L1 -1 6155 6117 1802 166 3 7 chr15 89794726 89795028 -11585493 - AluJb SINE Alu -11 301 1 323 215 43 21 chr15 89795028 89795080 -11585441 - L1PB4 LINE L1 -39 6117 6061 1907 152 0 7 chr15 89795124 89795420 -11585101 + AluJb SINE Alu 13 306 -6 235 179 0 54 chr15 89795420 89795476 -11585045 + L1MC5 LINE L1 7125 7177 -784 427 175 92 33 chr15 89795486 89795606 -11584915 + L1MC5 LINE L1 7769 7895 -66 234 0 0 0 chr15 89796556 89796582 -11583939 + (A)n Simple_repeat Simple_repeat 1 26 0 302 258 97 0 chr15 89796868 89796961 -11583560 - MIR3 SINE MIR -41 167 66 297 220 0 0 chr15 89796997 89797056 -11583465 + L2 LINE L2 3255 3313 0 2319 52 14 11 chr15 89797109 89797424 -11583097 - AluY SINE Alu 0 316 1 2411 89 3 0 chr15 89797424 89797726 -11582795 - AluSp SINE Alu -10 303 1 25 0 0 0 chr15 89797726 89797751 -11582770 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr15 89797838 89797859 -11582662 + AT_rich Low_complexity Low_complexity 1 21 0 187 239 91 80 chr15 89797907 89797995 -11582526 + L2 LINE L2 1891 1979 -1335 2091 134 7 3 chr15 89798070 89798377 -11582144 - AluSx SINE Alu -4 308 1 366 231 0 26 chr15 89799628 89799706 -11580815 + Tigger7 DNA MER2_type 1 76 -2411 929 142 302 14 chr15 89799706 89799918 -11580603 - Tigger7 DNA MER2_type -2139 348 76 * 1941 129 49 12 chr15 89799916 89800241 -11580280 + Tigger7 DNA MER2_type 2143 2479 -8 289 278 67 0 chr15 89800737 89800827 -11579694 + Tigger8 DNA MER2_type 206 301 -365 300 219 192 0 chr15 89800853 89800926 -11579595 + Tigger8 DNA MER2_type 343 429 -237 2087 128 7 3 chr15 89801499 89801795 -11578726 - AluSx SINE Alu -15 297 1 289 327 67 0 chr15 89802165 89802269 -11578252 - MIR3 SINE MIR -49 159 49 1133 130 0 45 chr15 89802402 89802579 -11577942 + FAM SINE Alu 1 169 -6 301 250 98 18 chr15 89802671 89802783 -11577738 - L1ME4a LINE L1 -200 5921 5801 366 213 133 53 chr15 89802877 89803027 -11577494 + MER112 DNA MER1_type 44 205 -55 26 50 0 0 chr15 89803236 89803276 -11577245 + AT_rich Low_complexity Low_complexity 1 40 0 223 361 52 33 chr15 89803730 89803943 -11576578 - L2 LINE L2 -229 3043 2827 318 297 85 8 chr15 89804407 89804525 -11575996 - L3 LINE CR1 -100 1477 1351 23 0 0 0 chr15 89804806 89804829 -11575692 + AT_rich Low_complexity Low_complexity 1 23 0 648 227 188 11 chr15 89804899 89805176 -11575345 - HAL1 LINE L1 -1146 1361 1036 591 230 32 101 chr15 89805339 89805421 -11575100 - MIR SINE MIR -31 231 145 2223 113 0 3 chr15 89805421 89805721 -11574800 - AluSg SINE Alu -11 299 1 591 230 32 101 chr15 89805721 89805886 -11574635 - MIR SINE MIR -117 145 1 493 282 134 46 chr15 89805886 89806078 -11574443 - L3 LINE CR1 -910 667 457 516 293 135 9 chr15 89806123 89806345 -11574176 + MIR SINE MIR 13 262 0 532 351 58 26 chr15 89806345 89806690 -11573831 - L3 LINE CR1 -1173 404 49 558 270 165 52 chr15 89806847 89807192 -11573329 + L2 LINE L2 102 485 -2829 2003 120 40 7 chr15 89807195 89807495 -11573026 - AluSx SINE Alu 0 312 3 1960 141 7 3 chr15 89807528 89807825 -11572696 + AluSx SINE Alu 6 303 -9 26 30 0 0 chr15 89808411 89808444 -11572077 + AT_rich Low_complexity Low_complexity 1 33 0 1304 184 3 109 chr15 89808597 89808906 -11571615 + AluSp SINE Alu 1 341 28 267 31 0 0 chr15 89808906 89808938 -11571583 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 2241 95 0 3 chr15 89808940 89809224 -11571297 - AluSx SINE Alu -29 283 1 1304 184 3 109 chr15 89809224 89809259 -11571262 + AluSp SINE Alu 274 311 -2 972 127 0 8 chr15 89809274 89809408 -11571113 - FLAM_C SINE Alu 0 133 1 389 306 18 45 chr15 89811076 89811187 -11569334 - L2 LINE L2 -24 3248 3141 266 360 98 42 chr15 89811572 89812092 -11568429 - L2 LINE L2 -819 2495 1947 490 258 67 17 chr15 89812857 89813035 -11567486 + MIR SINE MIR 5 191 -71 21 0 0 0 chr15 89813347 89813368 -11567153 + AT_rich Low_complexity Low_complexity 1 21 0 191 113 88 0 chr15 89813548 89813628 -11566893 + (TA)n Simple_repeat Simple_repeat 1 87 0 1610 171 14 14 chr15 89813655 89813941 -11566580 - AluJo SINE Alu 0 312 27 22 80 0 0 chr15 89813941 89813991 -11566530 + AT_rich Low_complexity Low_complexity 1 50 0 1971 142 44 0 chr15 89814117 89814412 -11566109 + AluSx SINE Alu 1 308 -4 1463 190 25 4 chr15 89815152 89815426 -11565095 + AluJo SINE Alu 5 284 -28 237 83 0 0 chr15 89815729 89815765 -11564756 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1946 136 7 7 chr15 89815765 89816045 -11564476 - AluSx SINE Alu -32 280 1 24 32 0 0 chr15 89816346 89816377 -11564144 + AT_rich Low_complexity Low_complexity 1 31 0 3924 206 99 16 chr15 89816393 89817260 -11563261 - L1MD3 LINE L1 -26 7997 7061 2086 110 33 17 chr15 89817260 89817560 -11562961 - AluSx SINE Alu -7 305 1 3924 206 99 16 chr15 89817560 89817730 -11562791 - L1MD3 LINE L1 -962 7061 6907 514 157 12 0 chr15 89817717 89817800 -11562721 - L1MC4a LINE L1 -1113 6695 6612 * 191 191 48 0 chr15 89817872 89817914 -11562607 + MER5A DNA MER1_type 145 188 -1 2251 101 7 3 chr15 89818036 89818343 -11562178 - AluSq SINE Alu -5 308 1 492 198 41 128 chr15 89818959 89819131 -11561390 + MER5B DNA MER1_type 19 175 -3 2332 64 0 10 chr15 89819495 89819793 -11560728 - AluY SINE Alu -16 295 1 217 261 0 0 chr15 89819875 89819921 -11560600 - L2 LINE L2 -1 3312 3267 2334 109 0 0 chr15 89820521 89820832 -11559689 + AluSx SINE Alu 1 311 -1 698 151 0 59 chr15 89820912 89821031 -11559490 - FLAM_C SINE Alu -5 138 27 193 279 164 0 chr15 89821276 89821337 -11559184 + L2 LINE L2 3201 3271 -1 714 251 103 29 chr15 89821726 89821969 -11558552 - MIR SINE MIR 0 262 2 2266 100 10 0 chr15 89822132 89822442 -11558079 + AluSp SINE Alu 1 313 0 2110 135 0 0 chr15 89822454 89822757 -11557764 + AluSx SINE Alu 1 303 -9 2929 187 56 51 chr15 89822763 89823381 -11557140 - L1MB7 LINE L1 -10 6174 5550 2066 141 10 0 chr15 89823381 89823686 -11556835 - AluSx SINE Alu -4 308 1 2929 187 56 51 chr15 89823686 89823795 -11556726 - L1MB7 LINE L1 -634 5550 5443 2050 90 0 0 chr15 89823866 89824122 -11556399 + AluSx SINE Alu 1 256 -56 217 313 134 57 chr15 89824228 89824474 -11556047 - L2 LINE L2 -497 2817 2553 293 174 14 43 chr15 89824679 89824748 -11555773 - Charlie2 DNA MER1_type -6 2856 2790 282 169 52 0 chr15 89824748 89824825 -11555696 + (TA)n Simple_repeat Simple_repeat 2 82 0 189 0 0 0 chr15 89824825 89824846 -11555675 + (TG)n Simple_repeat Simple_repeat 2 22 0 1992 106 40 0 chr15 89824847 89825122 -11555399 - AluSq SINE Alu -27 286 1 606 264 0 0 chr15 89825169 89825294 -11555227 - FLAM_A SINE Alu -5 137 13 2229 176 54 65 chr15 89825344 89825831 -11554690 - Charlie2a DNA MER1_type -711 2151 1671 1804 142 0 68 chr15 89825831 89826154 -11554367 - AluJb SINE Alu -11 301 1 2229 176 54 65 chr15 89826154 89826279 -11554242 - Charlie2a DNA MER1_type -1191 1671 1546 776 168 0 58 chr15 89826282 89826456 -11554065 - FLAM_A SINE Alu 0 133 1 2005 99 36 46 chr15 89826464 89826767 -11553754 - AluSq SINE Alu -13 300 1 959 173 15 46 chr15 89826974 89827171 -11553350 - L1MB7 LINE L1 -1 6183 5993 822 153 15 27 chr15 89827174 89827354 -11553167 - L1MB7 LINE L1 -282 5896 5718 3234 139 103 49 chr15 89827666 89828200 -11552321 - L1MB8 LINE L1 0 6178 5599 2347 97 0 3 chr15 89828200 89828499 -11552022 - AluSg SINE Alu -12 298 1 3234 139 103 49 chr15 89828499 89828633 -11551888 - L1MB8 LINE L1 -579 5599 5474 24 77 0 0 chr15 89828640 89828692 -11551829 + AT_rich Low_complexity Low_complexity 1 52 0 1408 254 53 28 chr15 89828981 89829378 -11551143 - Charlie2 DNA MER1_type -2286 576 170 2382 90 3 0 chr15 89829396 89829697 -11550824 - AluSg SINE Alu -8 302 1 795 155 8 23 chr15 89829705 89829834 -11550687 - FLAM_C SINE Alu -6 127 1 1353 118 5 38 chr15 89830104 89830315 -11550206 - MER2 DNA MER2_type -137 208 5 1444 114 34 72 chr15 89830576 89830657 -11549864 + MER30 DNA MER1_type 3 86 -144 2245 103 0 3 chr15 89830657 89830948 -11549573 + AluSq SINE Alu 1 290 -23 1444 114 34 72 chr15 89830948 89831103 -11549418 + MER30 DNA MER1_type 86 230 0 2157 114 0 0 chr15 89831420 89831731 -11548790 + AluSx SINE Alu 1 311 0 1363 203 81 27 chr15 89831745 89832079 -11548442 - MLT1A1 LTR MaLR -11 354 1 21 0 0 0 chr15 89832889 89832910 -11547611 + AT_rich Low_complexity Low_complexity 1 21 0 2069 118 38 0 chr15 89832932 89833221 -11547300 + AluSx SINE Alu 1 300 -12 260 181 69 14 chr15 89833367 89833439 -11547082 - L1ME LINE L1 -253 5868 5793 298 198 198 0 chr15 89833537 89833628 -11546893 - L1ME LINE L1 -459 5662 5554 2159 118 3 10 chr15 89833637 89833950 -11546571 - AluSx SINE Alu -1 311 1 3567 181 24 40 chr15 89834582 89834852 -11545669 - L1MB7 LINE L1 -20 6164 5891 1860 132 61 24 chr15 89834852 89835147 -11545374 - AluSx SINE Alu -6 306 1 3567 181 24 40 chr15 89835147 89835306 -11545215 - L1MB7 LINE L1 -293 5891 5731 1590 167 55 0 chr15 89835306 89835599 -11544922 - AluJo SINE Alu 0 312 4 3567 181 24 40 chr15 89835599 89835926 -11544595 - L1MB7 LINE L1 -453 5731 5419 1958 111 4 0 chr15 89835966 89836227 -11544294 - AluSg SINE Alu -48 262 1 354 121 0 17 chr15 89836227 89836285 -11544236 - L1MB7 LINE L1 -737 5441 5385 2639 38 0 16 chr15 89836351 89836667 -11543854 - AluY SINE Alu 0 311 1 2232 121 0 3 chr15 89836981 89837287 -11543234 + AluSx SINE Alu 1 305 -7 330 344 25 6 chr15 89837571 89837728 -11542793 + HAL1b LINE L1 447 606 -742 234 116 0 0 chr15 89837781 89837824 -11542697 + (T)n Simple_repeat Simple_repeat 1 43 0 2169 115 7 0 chr15 89838004 89838300 -11542221 + AluJb SINE Alu 1 298 -14 189 0 0 0 chr15 89838357 89838378 -11542143 + (TA)n Simple_repeat Simple_repeat 1 21 0 315 0 0 0 chr15 89839302 89839337 -11541184 + (T)n Simple_repeat Simple_repeat 1 35 0 417 288 105 60 chr15 89840743 89840957 -11539564 - L1MC4a LINE L1 -309 5812 5650 2209 115 0 3 chr15 89840957 89841253 -11539268 - AluSx SINE Alu -17 295 1 417 288 105 60 chr15 89841253 89841323 -11539198 - L1MC4a LINE L1 -471 5650 5585 2317 93 0 43 chr15 89841397 89841719 -11538802 - AluSq SINE Alu -5 308 1 213 231 164 90 chr15 89841773 89841907 -11538614 - MIR SINE MIR -34 228 85 635 233 194 19 chr15 89841975 89842181 -11538340 - MIR SINE MIR -14 248 7 434 77 0 0 chr15 89842274 89842326 -11538195 + Alu SINE Alu 2 53 -256 2086 212 52 30 chr15 89842342 89842447 -11538074 - MER119 DNA MER1_type -108 475 374 2213 114 3 0 chr15 89842447 89842746 -11537775 - AluSp SINE Alu -11 302 3 2086 212 52 30 chr15 89842746 89843103 -11537418 - MER119 DNA MER1_type -209 374 3 226 180 27 45 chr15 89844007 89844118 -11536403 + (TTAA)n Simple_repeat Simple_repeat 4 112 0 2163 112 7 3 chr15 89844510 89844804 -11535717 + AluSq SINE Alu 1 295 -18 1151 265 71 49 chr15 89844940 89845508 -11535013 - L2 LINE L2 -1 3312 2725 1692 221 207 25 chr15 89845603 89845692 -11534829 - L2 LINE L2 -1912 1402 1331 854 205 62 62 chr15 89845692 89845916 -11534605 - MER58A DNA MER1_type 0 224 1 1692 221 207 25 chr15 89845916 89846445 -11534076 - L2 LINE L2 -1983 1331 660 2289 90 7 7 chr15 89846445 89846744 -11533777 + AluSq SINE Alu 1 299 -14 1692 221 207 25 chr15 89846744 89846767 -11533754 - L2 LINE L2 -2654 660 643 215 132 26 0 chr15 89847204 89847242 -11533279 + (TG)n Simple_repeat Simple_repeat 2 40 0 2307 102 0 3 chr15 89847998 89848302 -11532219 + AluSq SINE Alu 1 303 -10 1364 88 0 0 chr15 89848307 89848477 -11532044 + AluSc SINE Alu 125 294 -15 22 35 0 0 chr15 89848595 89848624 -11531897 + AT_rich Low_complexity Low_complexity 1 29 0 357 292 123 32 chr15 89848684 89848992 -11531529 + HAL1 LINE L1 1096 1431 -1076 452 253 119 64 chr15 89848994 89849279 -11531242 - MER34 LTR ERV1 0 776 353 234 263 114 9 chr15 89849305 89849419 -11531102 - LTR48 LTR ERV1 -484 303 178 * 252 231 0 0 chr15 89849412 89849464 -11531057 - MER34 LTR ERV1 -465 77 26 2313 78 10 0 chr15 89849696 89849989 -11530532 + AluSp SINE Alu 1 296 -17 2151 125 0 3 chr15 89850161 89850456 -11530065 + AluSx SINE Alu 1 294 -18 1847 164 0 3 chr15 89851054 89851347 -11529174 + AluJo SINE Alu 3 294 -18 1249 187 3 110 chr15 89851939 89852064 -11528457 + AluSp SINE Alu 1 138 -175 1297 120 0 0 chr15 89852064 89852248 -11528273 + L1MA1 LINE L1 6119 6302 0 1249 187 3 110 chr15 89852248 89852459 -11528062 + AluSp SINE Alu 138 301 -12 264 290 160 0 chr15 89853232 89853332 -11527189 - L2 LINE L2 -4 3268 3153 2000 146 0 16 chr15 89853736 89854044 -11526477 - AluJb SINE Alu -9 303 1 662 61 0 12 chr15 89854138 89854220 -11526301 - AluSg/x SINE Alu -87 223 143 656 207 176 0 chr15 89854220 89854413 -11526108 + HsTC2 DNA Tc2 1671 1897 -1 2326 94 0 0 chr15 89854442 89854739 -11525782 + AluSx SINE Alu 1 297 -15 1265 226 149 12 chr15 89855029 89855453 -11525068 - HsTC2 DNA Tc2 -1 1897 1240 * 1726 223 63 40 chr15 89855451 89855595 -11524926 - HsTC2 DNA Tc2 -1412 486 347 201 35 35 0 chr15 89855595 89855624 -11524897 + (TTTTG)n Simple_repeat Simple_repeat 2 175 0 1630 180 14 7 chr15 89855624 89855908 -11524613 - AluJo SINE Alu -1 314 1 1726 223 63 40 chr15 89855908 89856237 -11524284 - HsTC2 DNA Tc2 -1550 348 1 429 302 161 4 chr15 89856520 89856768 -11523753 + L2 LINE L2 2418 2704 -610 252 309 31 0 chr15 89856898 89856995 -11523526 - L2 LINE L2 -1004 2310 2211 196 308 0 0 chr15 89857227 89857279 -11523242 + L2 LINE L2 3221 3272 0 284 263 10 40 chr15 89857734 89857833 -11522688 + MIR SINE MIR 36 131 -77 1617 157 57 7 chr15 89858282 89858562 -11521959 - AluSx SINE Alu -16 296 3 1823 158 3 7 chr15 89859863 89860167 -11520354 - AluJb SINE Alu -9 303 1 216 246 72 14 chr15 89861193 89861262 -11519259 - MIR3 SINE MIR -22 186 114 1933 122 20 0 chr15 89861602 89861897 -11518624 - AluSq SINE Alu -12 301 1 398 270 112 47 chr15 89863749 89864010 -11516511 + L1MC/D LINE L1 5081 5379 -860 2325 72 0 10 chr15 89864010 89864315 -11516206 + AluSg SINE Alu 1 302 -8 398 270 112 47 chr15 89864315 89864411 -11516110 + L1MC/D LINE L1 5379 5467 -772 247 317 49 41 chr15 89865471 89865594 -11514927 - MIR3 SINE MIR -78 130 7 429 320 51 13 chr15 89866124 89866280 -11514241 - MIR SINE MIR -34 228 67 455 291 26 0 chr15 89866284 89866401 -11514120 - MER94 DNA DNA 0 134 15 199 289 0 0 chr15 89868904 89868949 -11511572 + L2 LINE L2 3228 3272 0 2088 98 33 26 chr15 89869204 89869511 -11511010 - AluSx SINE Alu -3 309 1 2088 109 6 10 chr15 89869533 89869846 -11510675 - AluSx SINE Alu 0 312 1 368 294 175 0 chr15 89870140 89870283 -11510238 - MER5A DNA MER1_type 0 189 22 237 216 30 43 chr15 89870283 89870385 -11510136 + MIR SINE MIR 49 150 -58 1777 134 3 34 chr15 89870386 89870684 -11509837 + AluJb SINE Alu 5 293 -19 2178 120 0 0 chr15 89871333 89871641 -11508880 - AluSx SINE Alu -4 308 1 414 182 40 81 chr15 89871664 89871763 -11508758 + MIR SINE MIR 29 123 -139 3456 74 15 20 chr15 89871795 89872001 -11508520 - LTR22A LTR ERVK 0 458 253 2043 118 0 7 chr15 89872001 89872297 -11508224 + AluSg SINE Alu 1 294 -16 3456 74 15 20 chr15 89872297 89872550 -11507971 - LTR22A LTR ERVK -205 253 1 5745 107 59 30 chr15 89873410 89874899 -11505622 + pTR5 LTR ERV1 743 2438 0 2194 88 0 7 chr15 89875650 89875945 -11504576 - AluSx SINE Alu -19 293 1 1972 125 7 0 chr15 89876632 89876921 -11503600 + AluSx SINE Alu 1 291 -21 2034 123 0 7 chr15 89876932 89877232 -11503289 + AluSc SINE Alu 1 298 -11 339 277 34 20 chr15 89877291 89877464 -11503057 + MIR3 SINE MIR 32 207 -1 1580 123 9 0 chr15 89877782 89878010 -11502511 + AluSx SINE Alu 44 273 -39 751 174 8 8 chr15 89878452 89878584 -11501937 + FLAM_A SINE Alu 1 132 -1 2209 103 3 0 chr15 89878617 89878929 -11501592 + AluSp SINE Alu 1 313 0 1327 109 0 0 chr15 89878929 89879113 -11501408 + AluSq SINE Alu 126 309 -4 1727 177 10 0 chr15 89879158 89879458 -11501063 + AluSx SINE Alu 1 303 -9 1467 128 4 9 chr15 89879461 89879687 -11500834 + AluSx SINE Alu 1 225 -87 897 132 15 123 chr15 89879783 89879987 -11500534 + AluSg/x SINE Alu 128 309 -1 843 278 57 19 chr15 89879996 89880265 -11500256 + HAL1b LINE L1 777 1034 -314 1661 136 28 71 chr15 89880265 89880446 -11500075 - AluJo SINE Alu 0 312 125 303 28 0 0 chr15 89880446 89880482 -11500039 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2067 100 0 4 chr15 89880483 89880764 -11499757 - AluSg SINE Alu -30 280 1 1661 136 28 71 chr15 89880764 89880903 -11499618 - AluJo SINE Alu -186 126 4 843 278 57 19 chr15 89880903 89881000 -11499521 + HAL1b LINE L1 1034 1157 -191 456 205 116 23 chr15 89881020 89881182 -11499339 - MER39 LTR ERV1 0 707 550 310 197 91 0 chr15 89881193 89881259 -11499262 - LTR48B LTR ERV1 -245 399 328 2168 107 0 10 chr15 89881303 89881613 -11498908 - AluSq SINE Alu -6 307 1 702 218 0 8 chr15 89881631 89881764 -11498757 - FLAM_A SINE Alu 0 133 2 471 204 41 24 chr15 89881766 89881929 -11498592 - LTR48 LTR ERV1 -559 228 2 240 329 63 0 chr15 89882013 89882092 -11498429 - L2 LINE L2 -37 3276 3193 2396 84 0 0 chr15 89882092 89882401 -11498120 - AluSg1 SINE Alu 0 309 1 238 171 0 29 chr15 89882418 89882488 -11498033 + HAL1b LINE L1 1267 1334 -14 2207 103 0 26 chr15 89882488 89882799 -11497722 - AluSx SINE Alu -9 303 1 1394 120 0 0 chr15 89882807 89882999 -11497522 - AluSg/x SINE Alu -11 301 110 2219 114 0 9 chr15 89883044 89883359 -11497162 + AluSx SINE Alu 1 312 0 2103 108 10 0 chr15 89883827 89884123 -11496398 - AluSx SINE Alu -13 299 1 218 260 125 0 chr15 89884317 89884413 -11496108 + MIR SINE MIR 63 170 -92 2330 93 0 0 chr15 89884719 89885020 -11495501 - AluSx SINE Alu -9 303 3 234 217 100 0 chr15 89885576 89885636 -11494885 - MIR SINE MIR -81 181 116 2121 120 0 0 chr15 89885898 89886190 -11494331 - AluSx SINE Alu -20 292 1 396 265 142 0 chr15 89886195 89886357 -11494164 - L1MC4a LINE L1 -1983 5825 5641 410 200 110 0 chr15 89887021 89887121 -11493400 + L2 LINE L2 3177 3287 -26 2009 114 14 0 chr15 89887224 89887513 -11493008 - AluSx SINE Alu -19 293 1 367 250 83 92 chr15 89888235 89888293 -11492228 + L2 LINE L2 2924 2981 -291 1242 211 68 51 chr15 89888293 89888485 -11492036 - LTR37A LTR ERV1 -3 423 236 2033 116 0 17 chr15 89888485 89888802 -11491719 + AluSq SINE Alu 1 312 0 1242 211 68 51 chr15 89888802 89889020 -11491501 - LTR37A LTR ERV1 -190 236 5 367 250 83 92 chr15 89889020 89889201 -11491320 + L2 LINE L2 2981 3161 -111 1859 140 39 0 chr15 89889202 89889487 -11491034 - AluJo SINE Alu -16 296 1 216 111 0 0 chr15 89889566 89889602 -11490919 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1683 161 0 11 chr15 89889858 89890138 -11490383 - AluJo SINE Alu -35 277 1 993 98 0 0 chr15 89890138 89890271 -11490250 - AluJo SINE Alu -177 135 3 195 283 0 0 chr15 89890670 89890716 -11489805 + L2 LINE L2 3215 3260 -12 2155 106 6 6 chr15 89890718 89891030 -11489491 + AluSx SINE Alu 1 312 0 2218 81 50 0 chr15 89891373 89891670 -11488851 + AluSp SINE Alu 2 313 0 893 148 60 0 chr15 89891693 89891842 -11488679 - FRAM SINE Alu -21 155 1 1796 147 7 7 chr15 89891848 89892148 -11488373 - AluJo SINE Alu -12 300 1 930 155 24 6 chr15 89892901 89893069 -11487452 - AluJb SINE Alu -10 302 132 2340 93 3 0 chr15 89893079 89893389 -11487132 - AluSx SINE Alu 0 312 2 2141 98 7 3 chr15 89893400 89893696 -11486825 - AluSc SINE Alu -12 297 1 463 312 105 23 chr15 89893734 89894077 -11486444 + L2 LINE L2 2389 2759 -555 748 321 24 18 chr15 89894093 89894152 -11486369 + L1ME LINE L1 4752 4809 -1337 1808 171 13 0 chr15 89894152 89894456 -11486065 + AluJb SINE Alu 1 308 -4 748 321 24 18 chr15 89894456 89894736 -11485785 + L1ME LINE L1 4809 5093 -1053 472 225 81 0 chr15 89894745 89894856 -11485665 - L1ME3A LINE L1 -5 6165 6046 2110 108 3 0 chr15 89894861 89895168 -11485353 + AluSg SINE Alu 1 308 -2 2161 106 3 13 chr15 89895210 89895522 -11484999 - AluSc SINE Alu 0 309 1 2242 92 0 16 chr15 89895522 89895838 -11484683 - AluSp SINE Alu -2 311 1 2202 115 0 16 chr15 89895838 89896152 -11484369 - AluSx SINE Alu -3 309 1 362 271 49 88 chr15 89896152 89896294 -11484227 + L1ME LINE L1 5062 5208 -954 1787 176 0 0 chr15 89896294 89896624 -11483897 + AluJb SINE Alu 1 330 0 362 271 49 88 chr15 89896624 89896809 -11483712 + L1ME LINE L1 5208 5399 -763 1723 180 0 0 chr15 89896809 89897104 -11483417 + AluJo SINE Alu 1 295 -17 362 271 49 88 chr15 89897104 89897137 -11483384 + L1ME LINE L1 5399 5432 -730 2173 100 7 0 chr15 89897137 89897426 -11483095 - AluSx SINE Alu -21 291 1 362 271 49 88 chr15 89897426 89897525 -11482996 + L1ME LINE L1 5432 5503 -659 1906 150 0 0 chr15 89897557 89897863 -11482658 + AluY SINE Alu 1 306 -5 1871 137 0 3 chr15 89898460 89898744 -11481777 - AluSx SINE Alu -7 305 23 475 112 22 11 chr15 89898771 89898860 -11481661 + GA-rich Low_complexity Low_complexity 3 92 0 393 253 21 0 chr15 89898887 89898982 -11481539 + MIR SINE MIR 41 137 -125 347 228 0 13 chr15 89899236 89899315 -11481206 + MER20 DNA MER1_type 1 78 -141 2273 100 0 6 chr15 89900184 89900495 -11480026 + AluSc SINE Alu 1 309 0 367 212 35 62 chr15 89900497 89900610 -11479911 - L1ME4a LINE L1 -87 6034 5925 1749 157 0 7 chr15 89900674 89900992 -11479529 + AluJb SINE Alu 1 316 0 2253 105 0 0 chr15 89900994 89901299 -11479222 + AluSx SINE Alu 1 305 -7 405 0 0 0 chr15 89901545 89901590 -11478931 + (CA)n Simple_repeat Simple_repeat 1 45 0 391 372 35 0 chr15 89901865 89902010 -11478511 - MIR SINE MIR -19 243 94 189 318 16 0 chr15 89902005 89902068 -11478453 - MIR3 SINE MIR -52 156 93 * 205 333 0 42 chr15 89902458 89902554 -11477967 + MIR SINE MIR 51 142 -66 2089 126 7 0 chr15 89902638 89902939 -11477582 + AluSx SINE Alu 1 303 -9 1697 131 35 0 chr15 89902939 89903199 -11477322 - 7SLRNA srpRNA srpRNA -31 289 21 2037 114 0 26 chr15 89903243 89903550 -11476971 - AluSx SINE Alu -13 299 1 240 221 13 78 chr15 89903621 89903698 -11476823 + MER117 DNA MER1_type 121 192 -5 902 118 0 30 chr15 89904145 89904280 -11476241 + FLAM_C SINE Alu 1 131 -2 31 0 0 0 chr15 89904280 89904311 -11476210 + AT_rich Low_complexity Low_complexity 1 31 0 422 305 21 7 chr15 89904680 89904821 -11475700 - L3 LINE CR1 -3 1574 1432 1027 282 79 20 chr15 89904897 89905340 -11475181 - L2 LINE L2 -2 3311 2843 2143 121 0 0 chr15 89905407 89905704 -11474817 + AluSg SINE Alu 3 299 -11 1111 117 31 0 chr15 89905704 89905867 -11474654 + AluSg/x SINE Alu 132 299 -11 2760 16 0 0 chr15 89905878 89906188 -11474333 + AluY SINE Alu 1 310 -1 2262 103 0 0 chr15 89907142 89907452 -11473069 - AluSx SINE Alu -1 311 2 670 171 23 47 chr15 89907476 89907605 -11472916 - AluJb SINE Alu -186 126 1 701 282 45 20 chr15 89908044 89908246 -11472275 + MIR SINE MIR 31 237 -25 2302 96 0 3 chr15 89908796 89909108 -11471413 + AluY SINE Alu 1 311 0 2207 112 0 0 chr15 89909120 89909415 -11471106 + AluSx SINE Alu 1 295 -17 307 346 39 8 chr15 89909450 89909580 -11470941 + L1MC4a LINE L1 5940 6073 -1735 409 250 46 0 chr15 89910560 89910668 -11469853 - MIR SINE MIR -103 159 47 1488 194 6 41 chr15 89910766 89911086 -11469435 + AluJo SINE Alu 1 309 -3 520 284 119 14 chr15 89911234 89911452 -11469069 + MIR SINE MIR 8 248 -14 1643 102 105 23 chr15 89911744 89912010 -11468511 + AluSq SINE Alu 9 296 -17 643 144 106 38 chr15 89912162 89912294 -11468227 + FLAM_C SINE Alu 2 142 -1 2269 92 0 7 chr15 89912295 89912598 -11467923 + AluSx SINE Alu 1 301 -11 666 328 173 4 chr15 89912653 89913125 -11467396 + L2 LINE L2 2754 3313 0 860 201 0 0 chr15 89913908 89914062 -11466459 - L1MA10 LINE L1 -1 6333 6180 1149 212 14 5 chr15 89914436 89914653 -11465868 + MER20 DNA MER1_type 1 219 0 1776 139 3 40 chr15 89914689 89915012 -11465509 + AluSx SINE Alu 1 311 -1 296 246 83 56 chr15 89917146 89917258 -11463263 - MIR SINE MIR -62 146 38 556 188 0 166 chr15 89917291 89917472 -11463049 + MIR SINE MIR 102 252 -10 499 303 54 46 chr15 89917714 89917955 -11462566 + MIR SINE MIR 5 247 -15 183 80 0 0 chr15 89918557 89918582 -11461939 + (CGG)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr15 89918646 89918669 -11461852 + (CCG)n Simple_repeat Simple_repeat 3 25 0 212 235 52 7 chr15 89918691 89918827 -11461694 + (CCG)n Simple_repeat Simple_repeat 1 142 0 24 100 0 0 chr15 89918827 89918907 -11461614 + GC_rich Low_complexity Low_complexity 1 80 0 24 0 0 0 chr15 89918954 89918978 -11461543 + GC_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr15 89919539 89919562 -11460959 + GC_rich Low_complexity Low_complexity 1 23 0 338 195 24 24 chr15 89919988 89920070 -11460451 - MIR SINE MIR -67 141 60 411 234 60 47 chr15 89922068 89922303 -11458218 - L1ME4a LINE L1 -37 6084 5847 2101 118 3 3 chr15 89922367 89922671 -11457850 - AluSx SINE Alu -8 304 1 624 108 0 0 chr15 89925831 89925914 -11454607 - FLAM SINE Alu -18 125 43 260 268 81 32 chr15 89926550 89926673 -11453848 - MIR3 SINE MIR -45 163 35 317 231 144 0 chr15 89927721 89927825 -11452696 - MER20 DNA MER1_type -17 202 84 23 68 0 0 chr15 89931564 89931608 -11448913 + GC_rich Low_complexity Low_complexity 1 44 0 277 257 80 44 chr15 89933335 89933448 -11447073 + MIR SINE MIR 16 132 -130 711 137 111 26 chr15 89933586 89933739 -11446782 + MER58A DNA MER1_type 45 210 -14 259 271 129 0 chr15 89933767 89933852 -11446669 - MIR SINE MIR -69 139 44 794 251 0 0 chr15 89933880 89934047 -11446474 - MER45A DNA AcHobo -11 167 1 1641 256 100 29 chr15 89934927 89935429 -11445092 - L2 LINE L2 -46 3267 2680 2128 124 0 13 chr15 89935429 89935744 -11444777 - AluSx SINE Alu -1 311 1 1641 256 100 29 chr15 89935744 89936092 -11444429 - L2 LINE L2 -633 2680 2358 1824 103 21 48 chr15 89936092 89936434 -11444087 - AluSx SINE Alu 0 334 1 338 304 59 37 chr15 89936452 89936587 -11443934 - MIR SINE MIR -106 156 19 1841 135 0 34 chr15 89941523 89941649 -11438872 + AluJb SINE Alu 10 139 -173 2348 102 0 0 chr15 89941649 89941962 -11438559 + AluSq SINE Alu 1 313 0 1841 135 0 34 chr15 89941962 89942132 -11438389 + AluJb SINE Alu 139 296 -16 2004 145 3 3 chr15 89942133 89942437 -11438084 + AluSx SINE Alu 3 306 -6 325 265 289 12 chr15 89942445 89942611 -11437910 - MIR SINE MIR -5 257 46 205 359 111 34 chr15 89943222 89943418 -11437103 - L2 LINE L2 -788 2526 2346 1671 149 12 67 chr15 89943418 89943747 -11436774 + AluJb SINE Alu 1 311 -1 205 359 111 34 chr15 89943747 89943901 -11436620 - L2 LINE L2 -968 2346 2149 1988 128 0 31 chr15 89944211 89944531 -11435990 + AluSq SINE Alu 1 310 -3 2405 90 0 0 chr15 89944753 89945063 -11435458 - AluSx SINE Alu -2 310 1 437 228 117 143 chr15 89945714 89946255 -11434266 + L1MCc LINE L1 1279 1998 -4943 710 174 50 50 chr15 89946259 89946331 -11434190 + L1ME2 LINE L1 5803 5874 -290 2044 117 24 0 chr15 89946331 89946622 -11433899 + AluSx SINE Alu 1 298 -14 710 174 50 50 chr15 89946622 89946767 -11433754 + L1ME2 LINE L1 5873 6020 -144 305 259 25 0 chr15 89946768 89946849 -11433672 + REP3 LTR ERV 1 83 -479 603 218 28 0 chr15 89946897 89947039 -11433482 + L1ME2 LINE L1 6019 6164 0 428 241 177 89 chr15 89947040 89947086 -11433435 + HAL1 LINE L1 1038 1079 -1428 2092 126 7 0 chr15 89947086 89947388 -11433133 + AluSp SINE Alu 1 304 -9 428 241 177 89 chr15 89947388 89947403 -11433118 + HAL1 LINE L1 1079 1091 -1416 2359 101 0 0 chr15 89947403 89947710 -11432811 + AluSx SINE Alu 1 307 -5 428 241 177 89 chr15 89947710 89947850 -11432671 + HAL1 LINE L1 1091 1258 -1249 812 185 43 0 chr15 89947888 89948050 -11432471 + FRAM SINE Alu 1 168 -8 1427 193 7 46 chr15 89948051 89948192 -11432329 + AluJb SINE Alu 1 146 -166 2373 83 3 6 chr15 89948192 89948506 -11432015 + AluSq SINE Alu 1 313 0 1427 193 7 46 chr15 89948506 89948670 -11431851 + AluJb SINE Alu 146 294 -18 2226 42 48 14 chr15 89948696 89948985 -11431536 + L1PA8 LINE L1 5866 6164 -8 306 320 73 60 chr15 89949058 89949164 -11431357 + L1ME LINE L1 5544 5647 -474 1743 166 46 14 chr15 89949164 89949513 -11431008 - MLT1A1 LTR MaLR -1 364 5 306 320 73 60 chr15 89949513 89949640 -11430881 + L1ME LINE L1 5647 5780 -341 21 0 0 0 chr15 89950041 89950062 -11430459 + GC_rich Low_complexity Low_complexity 1 21 0 2254 96 0 16 chr15 89951927 89952239 -11428282 - AluSx SINE Alu -5 307 1 377 235 189 0 chr15 89952239 89952371 -11428150 - MER117 DNA MER1_type -40 157 1 271 383 244 2 chr15 89955442 89955844 -11424677 + L3 LINE CR1 190 688 -889 * 478 256 100 96 chr15 89955835 89955910 -11424611 - MIR SINE MIR -10 252 179 2218 94 19 13 chr15 89955910 89956219 -11424302 - AluSx SINE Alu -1 311 1 478 256 100 96 chr15 89956219 89956393 -11424128 - MIR SINE MIR -83 179 2 211 362 55 37 chr15 89956442 89956605 -11423916 + L3 LINE CR1 1353 1518 -59 2343 78 0 0 chr15 89956950 89957246 -11423275 - AluY SINE Alu -15 296 1 208 293 109 52 chr15 89959149 89959323 -11421198 - MIR SINE MIR -9 253 70 1617 146 43 7 chr15 89961400 89961680 -11418841 + AluJo SINE Alu 1 290 -22 2195 105 0 0 chr15 89961856 89962161 -11418360 - AluSg SINE Alu -5 305 1 243 273 23 11 chr15 89963227 89963315 -11417206 + MIR3 SINE MIR 94 182 -26 752 253 105 5 chr15 89964426 89964616 -11415905 - MER3 DNA MER1_type 0 209 1 208 312 132 26 chr15 89964620 89964886 -11415635 - L2 LINE L2 -459 2855 2562 327 274 36 0 chr15 89966421 89966505 -11414016 - L2 LINE L2 -39 3233 3147 1943 75 4 0 chr15 89966629 89966882 -11413639 - AluSq SINE Alu -59 254 1 547 329 99 0 chr15 89968205 89968567 -11411954 + L1M4 LINE L1 3875 4272 -1874 354 342 103 54 chr15 89968620 89968980 -11411541 + L1M4 LINE L1 4562 4993 -1153 1867 97 42 28 chr15 89968980 89969268 -11411253 + AluSx SINE Alu 1 292 -20 354 342 103 54 chr15 89969268 89969528 -11410993 + L1M4 LINE L1 4993 5239 -907 238 307 13 0 chr15 89969715 89969790 -11410731 + MIR SINE MIR 186 261 -1 1488 215 0 13 chr15 89970010 89970308 -11410213 + AluSp SINE Alu 3 296 -7 201 240 19 48 chr15 89971139 89971243 -11409278 + (CCCA)n Simple_repeat Simple_repeat 2 102 0 225 264 23 31 chr15 89971306 89971435 -11409086 + C-rich Low_complexity Low_complexity 2 129 0 204 234 63 25 chr15 89971413 89971571 -11408950 + (CACCT)n Simple_repeat Simple_repeat 1 164 0 * 1599 124 4 4 chr15 89971734 89971975 -11408546 - AluSx SINE Alu -71 241 1 396 265 142 0 chr15 89971980 89972142 -11408379 - L1MC4a LINE L1 -1983 5825 5641 410 200 110 0 chr15 89972807 89972907 -11407614 + L2 LINE L2 3177 3287 -26 2009 114 14 0 chr15 89973010 89973299 -11407222 - AluSx SINE Alu -19 293 1 367 250 83 92 chr15 89974021 89974079 -11406442 + L2 LINE L2 2924 2981 -291 1242 211 68 51 chr15 89974079 89974271 -11406250 - LTR37A LTR ERV1 -3 423 236 2033 116 0 17 chr15 89974271 89974588 -11405933 + AluSq SINE Alu 1 312 0 1242 211 68 51 chr15 89974588 89974806 -11405715 - LTR37A LTR ERV1 -190 236 5 367 250 83 92 chr15 89974806 89974987 -11405534 + L2 LINE L2 2981 3161 -111 1859 140 39 0 chr15 89974988 89975273 -11405248 - AluJo SINE Alu -16 296 1 216 111 0 0 chr15 89975352 89975388 -11405133 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1683 161 0 11 chr15 89975644 89975924 -11404597 - AluJo SINE Alu -35 277 1 993 98 0 0 chr15 89975924 89976057 -11404464 - AluJo SINE Alu -177 135 3 195 283 0 0 chr15 89976456 89976502 -11404019 + L2 LINE L2 3215 3260 -12 2155 106 6 6 chr15 89976504 89976816 -11403705 + AluSx SINE Alu 1 312 0 2218 81 50 0 chr15 89977163 89977460 -11403061 + AluSp SINE Alu 2 313 0 893 148 60 0 chr15 89977483 89977632 -11402889 - FRAM SINE Alu -21 155 1 1796 147 7 7 chr15 89977638 89977938 -11402583 - AluJo SINE Alu -12 300 1 930 155 24 6 chr15 89978691 89978859 -11401662 - AluJb SINE Alu -10 302 132 2340 93 3 0 chr15 89978869 89979179 -11401342 - AluSx SINE Alu 0 312 2 2141 98 7 3 chr15 89979190 89979486 -11401035 - AluSc SINE Alu -12 297 1 463 312 105 23 chr15 89979524 89979867 -11400654 + L2 LINE L2 2389 2759 -555 804 292 52 62 chr15 89979883 89979942 -11400579 + L1M4 LINE L1 4752 4810 -1360 1787 174 13 0 chr15 89979942 89980246 -11400275 + AluJb SINE Alu 1 308 -4 804 292 52 62 chr15 89980246 89980651 -11399870 + L1M4 LINE L1 4810 5217 -953 2049 110 0 0 chr15 89980651 89980979 -11399542 + AluSg SINE Alu 1 328 0 804 292 52 62 chr15 89980979 89981165 -11399356 + L1M4 LINE L1 5217 5393 -777 1723 180 0 0 chr15 89981165 89981460 -11399061 + AluJo SINE Alu 1 295 -17 804 292 52 62 chr15 89981460 89981493 -11399028 + L1M4 LINE L1 5393 5425 -745 1908 116 8 0 chr15 89981493 89981760 -11398761 - AluSx SINE Alu -21 291 23 230 89 44 0 chr15 89981762 89981844 -11398677 + Alu SINE Alu 254 337 0 2163 113 0 6 chr15 89982387 89982698 -11397823 + AluSx SINE Alu 1 309 -3 236 260 10 73 chr15 89982787 89982883 -11397638 + MLT1I LTR MaLR 243 332 -77 302 256 85 54 chr15 89982908 89983037 -11397484 - MER5A DNA MER1_type -51 138 6 2338 97 0 0 chr15 89983083 89983391 -11397130 - AluSx SINE Alu -4 308 1 1549 215 59 6 chr15 89984261 89984601 -11395920 + MLT1A1 LTR MaLR 8 365 0 2110 85 0 3 chr15 89984718 89985000 -11395521 + AluSx SINE Alu 30 310 -2 479 291 53 59 chr15 89985329 89985703 -11394818 + L1MEd LINE L1 879 1250 -4869 2155 79 0 10 chr15 89985729 89986021 -11394500 + AluY SINE Alu 1 289 -22 2276 77 3 0 chr15 89986026 89986325 -11394196 + AluY SINE Alu 1 300 -11 1337 168 21 109 chr15 89986351 89986691 -11393830 + AluYb8 SINE Alu 1 310 -8 2079 109 7 0 chr15 89986734 89987027 -11393494 + AluSx SINE Alu 1 295 -17 275 278 136 21 chr15 89987134 89987325 -11393196 + HAL1 LINE L1 1447 1659 -848 1497 85 0 5 chr15 89987507 89987707 -11392814 + AluY SINE Alu 94 292 -19 240 221 130 0 chr15 89987707 89987784 -11392737 - L1MC4 LINE L1 -1340 6702 6616 1111 148 6 0 chr15 89987807 89987983 -11392538 + FRAM SINE Alu 1 169 -7 2190 102 0 0 chr15 89987984 89988277 -11392244 + AluSx SINE Alu 3 295 -17 263 276 141 22 chr15 89988388 89988573 -11391948 + HAL1 LINE L1 1453 1659 -848 948 111 7 0 chr15 89988765 89988900 -11391621 + AluSq/x SINE Alu 1 136 -176 232 200 21 145 chr15 89988907 89989052 -11391469 + L1 LINE L1 4871 4997 -1149 * 421 205 24 55 chr15 89989047 89989174 -11391347 + L1MA9 LINE L1 6140 6262 -50 569 202 98 6 chr15 89989199 89989251 -11391270 + L1MC4a LINE L1 4981 5027 -1119 1834 118 0 0 chr15 89989251 89989521 -11391000 + AluSp SINE Alu 36 305 -8 569 202 98 6 chr15 89989521 89989651 -11390870 + L1MC4a LINE L1 5027 5180 -966 2224 85 0 13 chr15 89990298 89990604 -11389917 - AluSx SINE Alu -10 302 1 262 287 224 0 chr15 89992142 89992285 -11388236 + MIR SINE MIR 73 247 -15 797 333 43 56 chr15 89996498 89996999 -11383522 + L1MC4a LINE L1 5394 5889 -1919 1747 178 0 13 chr15 89996999 89997308 -11383213 + AluJo SINE Alu 1 305 -7 797 333 43 56 chr15 89997308 89997344 -11383177 + L1MC4a LINE L1 5889 5924 -1884 2115 111 0 0 chr15 89997423 89997721 -11382800 - AluY SINE Alu -13 298 1 24 0 0 0 chr15 89997722 89997746 -11382775 + AT_rich Low_complexity Low_complexity 1 24 0 1415 175 94 11 chr15 89997746 89998032 -11382489 - AluJb SINE Alu -2 310 1 672 283 21 21 chr15 89998348 89998539 -11381982 + MER117 DNA MER1_type 3 193 -4 2110 79 22 0 chr15 89998600 89998907 -11381614 - AluSx SINE Alu 0 313 1 2155 109 0 3 chr15 89998912 89999216 -11381305 - AluSq SINE Alu -10 303 1 243 294 71 0 chr15 89999931 90000016 -11380505 - L2 LINE L2 -12 3260 3170 233 300 95 11 chr15 90000033 90000199 -11380322 - MIR SINE MIR -61 147 17 336 200 0 0 chr15 90000459 90000534 -11379987 + (TCCA)n Simple_repeat Simple_repeat 2 76 0 2010 100 7 0 chr15 90000576 90000882 -11379639 + AluSx SINE Alu 11 318 0 210 245 0 19 chr15 90001509 90001562 -11378959 - MIR SINE MIR -163 99 48 2510 64 0 0 chr15 90001613 90001924 -11378597 + AluY SINE Alu 1 311 0 1446 196 79 7 chr15 90003101 90003381 -11377140 + AluJb SINE Alu 1 300 -2 314 60 0 20 chr15 90003687 90003737 -11376784 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 534 302 119 22 chr15 90003800 90004068 -11376453 - MLT1K LTR MaLR -104 484 191 265 311 206 21 chr15 90004168 90004406 -11376115 - L2 LINE L2 -182 3090 2809 276 182 15 0 chr15 90004503 90004569 -11375952 + MER63 DNA MER1_type 871 937 -125 297 253 21 0 chr15 90004569 90004664 -11375857 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 204 309 0 0 chr15 90004801 90004940 -11375581 + (CA)n Simple_repeat Simple_repeat 2 140 0 436 171 0 0 chr15 90005041 90005117 -11375404 - MLT1A1 LTR MaLR 0 365 290 735 183 17 0 chr15 90005119 90005239 -11375282 + FLAM_C SINE Alu 3 124 -19 969 220 31 85 chr15 90005260 90005578 -11374943 - MLT1A1 LTR MaLR -61 304 4 374 277 136 60 chr15 90006434 90006618 -11373903 + L1MCa LINE L1 1431 1628 -4798 1101 108 48 11 chr15 90006637 90006823 -11373698 + L1PA2 LINE L1 5962 6154 -1 833 233 19 8 chr15 90006859 90007078 -11373443 - MLT1D LTR MaLR -320 185 1 931 335 48 21 chr15 90007548 90008065 -11372456 + ERVL LTR ERVL 2140 2670 -3094 286 278 119 66 chr15 90008226 90008435 -11372086 + ERVL LTR ERVL 2887 3097 -2667 277 246 69 31 chr15 90008457 90008587 -11371934 + L1M4b LINE L1 29 163 -6696 3220 74 32 5 chr15 90008706 90009190 -11371331 + L1PA7 LINE L1 5235 5730 -424 2977 92 2 12 chr15 90009280 90009733 -11370788 + L1PA7 LINE L1 5744 6192 0 2382 89 0 3 chr15 90010447 90010751 -11369770 - AluY SINE Alu -8 303 1 1133 205 158 16 chr15 90010764 90011018 -11369503 - AluJo SINE Alu -12 290 1 1896 212 93 72 chr15 90011081 90011561 -11368960 - MLT1E LTR MaLR 0 593 97 1857 121 0 38 chr15 90011561 90011851 -11368670 + AluSx SINE Alu 28 306 -6 1896 212 93 72 chr15 90011851 90011951 -11368570 - MLT1E LTR MaLR -496 97 1 2173 118 3 3 chr15 90012235 90012531 -11367990 + AluSx SINE Alu 1 296 -16 1890 169 0 3 chr15 90012955 90013251 -11367270 + AluJo SINE Alu 1 295 -17 582 213 15 15 chr15 90013774 90013910 -11366611 - FLAM_C SINE Alu 0 143 8 800 134 0 0 chr15 90015307 90015419 -11365102 + AluSq/x SINE Alu 1 112 -200 1074 131 173 0 chr15 90016080 90016271 -11364250 - 7SLRNA srpRNA srpRNA -2 318 95 248 325 230 10 chr15 90017030 90017230 -11363291 - MIR SINE MIR -6 256 13 240 226 38 0 chr15 90017968 90018021 -11362500 - MIR SINE MIR -59 149 95 2062 138 10 0 chr15 90018910 90019207 -11361314 + AluJb SINE Alu 1 300 -12 218 305 70 30 chr15 90019317 90019438 -11361083 - MER5A DNA MER1_type -32 146 20 888 73 0 0 chr15 90020018 90020127 -11360394 + AluSp/q SINE Alu 199 307 -6 262 252 79 0 chr15 90020133 90020272 -11360249 + L1P5 LINE L1 5294 5443 -711 327 335 46 77 chr15 90020282 90020542 -11359979 + L1MB4 LINE L1 5488 5739 -423 26 30 0 0 chr15 90020767 90020800 -11359721 + AT_rich Low_complexity Low_complexity 1 33 0 2291 99 3 6 chr15 90020932 90021245 -11359276 - AluSx SINE Alu 0 312 1 1065 113 0 6 chr15 90021254 90021413 -11359108 - L1PA4 LINE L1 0 6155 5998 263 301 81 7 chr15 90021842 90021978 -11358543 - MIR SINE MIR -12 250 105 600 91 344 84 chr15 90022398 90022552 -11357969 - MER46A DNA MER2_type -35 201 8 219 236 0 67 chr15 90023390 90023479 -11357042 + (CCCTG)n Simple_repeat Simple_repeat 3 85 0 319 296 45 67 chr15 90023759 90023938 -11356583 - MIR3 SINE MIR -14 194 20 1847 167 0 0 chr15 90023966 90024253 -11356268 + AluJo SINE Alu 1 287 -25 1125 228 8 0 chr15 90024396 90024637 -11355884 + L1MB4 LINE L1 5938 6180 0 2180 104 27 0 chr15 90024971 90025270 -11355251 - AluSx SINE Alu -5 307 1 972 126 6 12 chr15 90025271 90025438 -11355083 - L1MA6 LINE L1 -349 5951 5786 437 190 87 1 chr15 90025437 90025553 -11354968 + L1MA6 LINE L1 6165 6290 -10 * 2009 112 77 0 chr15 90026022 90026309 -11354212 + AluSg SINE Alu 2 310 0 204 97 0 0 chr15 90026702 90026733 -11353788 + (TCC)n Simple_repeat Simple_repeat 2 32 0 399 306 67 0 chr15 90026913 90027047 -11353474 + MIR3 SINE MIR 41 183 -25 652 246 123 18 chr15 90027867 90028258 -11352263 - MLT1C LTR MaLR -8 459 1 661 184 40 20 chr15 90028345 90028497 -11352024 - MIR SINE MIR 0 262 108 374 308 175 44 chr15 90028683 90029066 -11351455 - L2 LINE L2 -34 3238 2806 225 65 0 0 chr15 90029341 90029372 -11351149 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4727 55 0 3 chr15 90029381 90029962 -11350559 - L1PA5 LINE L1 0 6154 5576 5777 41 0 24 chr15 90029963 90030771 -11349750 + L1P LINE L1 4634 5422 -732 477 268 139 39 chr15 90030847 90031157 -11349364 - L1ME LINE L1 -370 5751 5411 213 64 0 64 chr15 90031160 90031207 -11349314 + (TCC)n Simple_repeat Simple_repeat 3 46 0 297 51 0 68 chr15 90031224 90031283 -11349238 + (TCC)n Simple_repeat Simple_repeat 3 57 0 239 297 27 9 chr15 90031298 90031409 -11349112 + CT-rich Low_complexity Low_complexity 1 113 0 313 224 68 82 chr15 90031520 90031600 -11348921 + L1MC5 LINE L1 7741 7820 -141 425 139 123 57 chr15 90031600 90031722 -11348799 + FLAM_C SINE Alu 3 132 -1 313 224 68 82 chr15 90031722 90031788 -11348733 + L1MC5 LINE L1 7820 7885 -76 859 196 7 0 chr15 90031793 90031936 -11348585 - FRAM SINE Alu -22 154 11 1968 123 4 0 chr15 90032200 90032477 -11348044 - AluSx SINE Alu -34 278 1 2294 98 3 3 chr15 90032545 90032842 -11347679 - AluSx SINE Alu -15 297 1 2157 114 3 0 chr15 90033130 90033429 -11347092 - AluY SINE Alu -5 306 7 1382 123 15 0 chr15 90033889 90034092 -11346429 - AluSg/x SINE Alu -14 298 93 943 116 29 0 chr15 90034478 90034616 -11345905 + FLAM_C SINE Alu 1 142 -1 21 0 0 0 chr15 90034771 90034792 -11345729 + GC_rich Low_complexity Low_complexity 1 21 0 360 311 115 71 chr15 90035874 90036170 -11344351 - L1ME4a LINE L1 -192 5929 5621 2271 100 0 19 chr15 90036488 90036797 -11343724 - AluSx SINE Alu -9 303 1 1623 134 0 0 chr15 90037196 90037419 -11343102 + AluJb SINE Alu 87 309 -3 2191 133 3 0 chr15 90037633 90037941 -11342580 - AluSx SINE Alu -3 309 1 297 289 176 68 chr15 90038035 90038416 -11342105 - L2 LINE L2 -649 2665 2244 1595 145 0 0 chr15 90038664 90038899 -11341622 - AluJo SINE Alu -77 235 1 393 315 0 0 chr15 90039114 90039225 -11341296 - MIR3 SINE MIR -8 200 90 2341 107 0 0 chr15 90039996 90040296 -11340225 - AluSq SINE Alu -13 300 1 2189 108 0 54 chr15 90040775 90041091 -11339430 + AluSx SINE Alu 1 299 -13 263 270 16 0 chr15 90041559 90041622 -11338899 + L2 LINE L2 3209 3272 0 2460 84 20 0 chr15 90041711 90042010 -11338511 + AluSx SINE Alu 1 305 -7 501 185 199 0 chr15 90042414 90042560 -11337961 + MIR SINE MIR 72 246 -16 2221 117 3 19 chr15 90043020 90043337 -11337184 + AluSx SINE Alu 1 312 0 2206 142 3 0 chr15 90044338 90044648 -11335873 + AluSx SINE Alu 1 311 -1 1267 124 0 6 chr15 90044747 90044925 -11335596 + AluSg/x SINE Alu 128 304 -6 485 297 62 0 chr15 90048450 90048578 -11331943 - L2 LINE L2 -11 3261 3126 2180 129 0 0 chr15 90048659 90048961 -11331560 - AluSq SINE Alu -11 302 1 677 322 71 38 chr15 90048966 90049445 -11331076 - L2 LINE L2 0 3313 2763 236 209 0 15 chr15 90049623 90049690 -11330831 + T-rich Low_complexity Low_complexity 3 68 0 2266 102 16 0 chr15 90049699 90050002 -11330519 - AluSq SINE Alu -5 308 1 191 213 0 64 chr15 90050456 90050503 -11330018 + L2 LINE L2 1387 1430 -1884 295 309 118 35 chr15 90050661 90050715 -11329806 - L2 LINE L2 -1067 2247 2199 2044 138 3 3 chr15 90050715 90051012 -11329509 + AluJo SINE Alu 1 297 -15 295 309 118 35 chr15 90051012 90051323 -11329198 - L2 LINE L2 -1115 2199 1852 266 302 23 47 chr15 90051648 90051777 -11328744 - MIR SINE MIR -2 260 135 1902 159 0 3 chr15 90052102 90052433 -11328088 + AluSx SINE Alu 1 330 0 548 301 19 19 chr15 90052794 90052950 -11327571 - MIR SINE MIR -94 168 13 251 272 252 0 chr15 90053236 90053339 -11327182 + MIR3 SINE MIR 51 179 -29 1799 160 101 25 chr15 90053746 90054114 -11326407 + MSTD LTR MaLR 1 396 0 2483 81 3 3 chr15 90054334 90054642 -11325879 + AluSq SINE Alu 2 309 -4 275 67 0 0 chr15 90055156 90055201 -11325320 + L1MA7 LINE L1 6246 6290 -1 809 206 0 0 chr15 90055202 90055328 -11325193 + FLAM_C SINE Alu 2 127 -16 1384 157 6 126 chr15 90055337 90055450 -11325071 + AluSp SINE Alu 23 148 -165 2398 106 0 0 chr15 90055450 90055762 -11324759 + AluSq SINE Alu 1 312 -1 1384 157 6 126 chr15 90055762 90055794 -11324727 + AluSp SINE Alu 148 182 -131 1819 131 78 0 chr15 90055794 90056076 -11324445 + AluSx SINE Alu 1 304 -8 1384 157 6 126 chr15 90056076 90056254 -11324267 + AluSp SINE Alu 182 308 -5 2365 100 0 3 chr15 90056770 90057081 -11323440 - AluSx SINE Alu -2 310 1 1228 183 6 147 chr15 90057638 90057765 -11322756 + AluYb8 SINE Alu 1 144 -174 504 0 0 0 chr15 90057765 90057821 -11322700 + (TA)n Simple_repeat Simple_repeat 2 57 0 1228 183 6 147 chr15 90057821 90058054 -11322467 + AluYb8 SINE Alu 144 310 -8 1124 180 15 0 chr15 90058985 90059185 -11321336 + MER20 DNA MER1_type 16 218 -1 1386 111 0 0 chr15 90059201 90059390 -11321131 - AluSg/x SINE Alu 0 309 121 2358 92 0 0 chr15 90059207 90059510 -11321011 - AluSg1 SINE Alu -6 303 1 2141 124 16 10 chr15 90059512 90059818 -11320703 - AluSx SINE Alu -4 308 1 2380 84 3 3 chr15 90060207 90060503 -11320018 - AluSp SINE Alu -17 296 1 283 268 78 7 chr15 90060516 90060658 -11319863 + L1ME4a LINE L1 5970 6121 0 2135 112 0 0 chr15 90060997 90061312 -11319209 + AluSx SINE Alu 1 315 0 472 287 44 22 chr15 90061513 90061649 -11318872 - L2 LINE L2 0 3272 3134 362 364 114 0 chr15 90061694 90061922 -11318599 + L2 LINE L2 2412 2665 -649 957 148 12 0 chr15 90063102 90063264 -11317257 + AluJb SINE Alu 146 309 -3 984 202 124 57 chr15 90063348 90063683 -11316838 + L1MC5 LINE L1 7260 7636 -325 1841 103 42 58 chr15 90063683 90063993 -11316528 - AluSx SINE Alu -7 305 1 984 202 124 57 chr15 90063993 90064117 -11316404 + L1MC5 LINE L1 7636 7750 -211 1196 184 79 26 chr15 90064119 90064386 -11316135 + AluJo SINE Alu 1 281 -31 436 86 0 57 chr15 90064387 90064457 -11316064 - Alu SINE Alu -5 307 242 2176 113 7 0 chr15 90064471 90064762 -11315759 - AluSp SINE Alu -20 293 1 22 35 0 0 chr15 90064773 90064802 -11315719 + AT_rich Low_complexity Low_complexity 1 29 0 2248 81 13 29 chr15 90064992 90065301 -11315220 + AluSx SINE Alu 1 304 -8 1350 271 125 20 chr15 90065488 90066255 -11314266 + L2 LINE L2 2447 3298 -15 22 35 0 0 chr15 90066263 90066292 -11314229 + AT_rich Low_complexity Low_complexity 1 29 0 596 311 70 73 chr15 90066439 90067174 -11313347 - L2 LINE L2 0 3272 2546 221 193 140 0 chr15 90067281 90067338 -11313183 + L2 LINE L2 3150 3214 -58 884 190 0 40 chr15 90067770 90067944 -11312577 - AluJb SINE Alu -9 303 137 227 316 64 10 chr15 90067970 90068126 -11312395 - MIR SINE MIR -65 143 20 345 24 0 0 chr15 90068273 90068315 -11312206 + (GGGTG)n Simple_repeat Simple_repeat 1 42 0 820 176 0 126 chr15 90068533 90068732 -11311789 - AluJb SINE Alu -10 302 129 3436 149 9 9 chr15 90069183 90069732 -11310789 - L1MB3 LINE L1 -2 6181 5633 606 140 9 19 chr15 90069823 90069930 -11310591 + MSTA LTR MaLR 1 106 -322 1655 172 45 10 chr15 90070051 90070359 -11310162 + MSTA LTR MaLR 110 428 0 305 327 53 62 chr15 90070475 90070701 -11309820 + L2 LINE L2 3006 3229 -43 2179 121 0 3 chr15 90070739 90071044 -11309477 + AluSx SINE Alu 1 304 -8 329 301 83 8 chr15 90071332 90071465 -11309056 + MLT1H LTR MaLR 20 162 -387 2146 131 0 25 chr15 90071506 90071826 -11308695 + AluSx SINE Alu 1 312 0 400 202 8 3 chr15 90072003 90072092 -11308429 + MLT1H LTR MaLR 480 549 0 370 293 125 24 chr15 90073131 90073339 -11307182 + MIR SINE MIR 20 248 -14 999 120 23 0 chr15 90074594 90074769 -11305752 + CT-rich Low_complexity Low_complexity 1 179 0 393 206 0 0 chr15 90074782 90074874 -11305647 + CT-rich Low_complexity Low_complexity 5 96 0 827 125 37 29 chr15 90074878 90075014 -11305507 - AluSg/x SINE Alu -12 300 164 1879 143 4 4 chr15 90075133 90075457 -11305064 + AluJb SINE Alu 4 327 0 243 258 39 9 chr15 90075950 90076117 -11304404 - MLT1J2 LTR MaLR 0 450 247 318 304 24 16 chr15 90076683 90076808 -11303713 + L1ME LINE L1 5509 5634 -530 213 182 0 0 chr15 90077639 90077651 -11302870 + (TG)n Simple_repeat Simple_repeat 1 12 -32 6572 51 1 8 chr15 90077651 90078429 -11302092 + L1PA5 LINE L1 5382 6154 0 213 182 0 0 chr15 90078429 90078460 -11302061 + (TG)n Simple_repeat Simple_repeat 11 44 0 963 190 5 57 chr15 90078471 90078682 -11301839 + MER20 DNA MER1_type 1 200 -19 430 245 175 23 chr15 90079079 90079296 -11301225 + MIR SINE MIR 3 262 0 233 247 0 81 chr15 90079320 90079494 -11301027 + A-rich Low_complexity Low_complexity 6 165 0 * 245 247 19 37 chr15 90079406 90079568 -11300953 + (TAA)n Simple_repeat Simple_repeat 3 161 0 296 263 6 96 chr15 90080154 90080310 -11300211 + MIR SINE MIR 63 204 -58 24 32 0 0 chr15 90080310 90080341 -11300180 + AT_rich Low_complexity Low_complexity 1 31 0 2137 133 0 19 chr15 90080573 90080890 -11299631 + AluSx SINE Alu 1 311 -1 659 185 0 0 chr15 90080931 90081039 -11299482 - FLAM_A SINE Alu -11 131 24 926 241 17 38 chr15 90081499 90081789 -11298732 + L2 LINE L2 2111 2394 -920 553 295 27 81 chr15 90081813 90082183 -11298338 + MER21B LTR ERV1 26 375 -488 186 77 0 0 chr15 90082189 90082215 -11298306 - MER5B DNA MER1_type -149 29 4 626 295 132 7 chr15 90082217 90082505 -11298016 + L2 LINE L2 2902 3225 -88 571 125 0 0 chr15 90082719 90082799 -11297722 + MADE1 DNA Mariner 1 80 0 243 125 0 0 chr15 90082799 90082839 -11297682 + (CATA)n Simple_repeat Simple_repeat 3 42 0 297 260 144 0 chr15 90083182 90083286 -11297235 + L2 LINE L2 3123 3241 -31 193 257 238 30 chr15 90083357 90083458 -11297063 + MIR SINE MIR 51 172 -90 220 279 16 0 chr15 90084404 90084465 -11296056 + L2 LINE L2 3199 3260 -12 376 259 210 34 chr15 90084559 90084764 -11295757 - MIR SINE MIR -9 253 13 1854 149 20 7 chr15 90084981 90085282 -11295239 - AluSx SINE Alu -7 305 1 2009 147 3 0 chr15 90085507 90085806 -11294715 + AluSx SINE Alu 1 300 -12 616 243 49 49 chr15 90086017 90086305 -11294216 - L1ME3A LINE L1 -219 5951 5664 1397 156 0 30 chr15 90086321 90086558 -11293963 - AluJo SINE Alu -16 296 67 3334 155 113 9 chr15 90087080 90087724 -11292797 - MER50 LTR ERV1 -23 711 1 57 0 0 0 chr15 90088179 90088236 -11292285 + AT_rich Low_complexity Low_complexity 1 57 0 1241 170 39 95 chr15 90088289 90088485 -11292036 - L1MA9 LINE L1 -38 6274 6103 1713 140 63 14 chr15 90088485 90088770 -11291751 + AluJb SINE Alu 1 299 -13 1241 170 39 95 chr15 90088770 90088909 -11291612 - L1MA9 LINE L1 -209 6103 5958 25 83 0 0 chr15 90088951 90089011 -11291510 + AT_rich Low_complexity Low_complexity 1 60 0 1305 188 35 69 chr15 90089344 90089807 -11290714 - L1MC5 LINE L1 -38 7923 7477 344 306 124 12 chr15 90089837 90090079 -11290442 - L1ME3A LINE L1 -993 5153 4885 250 192 168 87 chr15 90090180 90090388 -11290133 + L1ME4a LINE L1 5835 6059 -62 234 0 0 0 chr15 90090397 90090423 -11290098 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 355 306 29 35 chr15 90090648 90090818 -11289703 + MIR3 SINE MIR 30 198 -10 793 199 24 36 chr15 90091091 90091257 -11289264 - FRAM SINE Alu -2 174 11 326 236 121 36 chr15 90091680 90091820 -11288701 - L1ME4a LINE L1 -20 6101 5950 2048 133 0 28 chr15 90092076 90092361 -11288160 + AluSq SINE Alu 1 278 -35 269 68 23 0 chr15 90092361 90092405 -11288116 + (CAA)n Simple_repeat Simple_repeat 1 45 0 2048 133 0 28 chr15 90092405 90092441 -11288080 + AluSq SINE Alu 278 313 0 668 288 23 8 chr15 90093013 90093270 -11287251 - L1ME4a LINE L1 -198 5923 5663 269 191 0 32 chr15 90094059 90094122 -11286399 - L1ME4a LINE L1 0 6121 6061 1528 214 30 3 chr15 90094165 90094468 -11286053 - AluJo SINE Alu -1 311 1 1535 143 45 101 chr15 90094468 90094620 -11285901 - L1MC1 LINE L1 -5 6328 6169 1767 170 138 16 chr15 90094620 90095062 -11285459 - LTR54B LTR ERV1 -2 496 1 2252 112 0 10 chr15 90095063 90095377 -11285144 + AluSx SINE Alu 1 311 -1 1535 143 45 101 chr15 90095377 90095570 -11284951 - L1MC1 LINE L1 -164 6169 6004 2264 110 0 0 chr15 90095570 90095869 -11284652 - AluSq SINE Alu -14 299 1 1535 143 45 101 chr15 90095869 90095885 -11284636 - L1MC1 LINE L1 -329 6004 5989 * 5415 157 62 18 chr15 90095870 90096383 -11284138 - L1MCa LINE L1 -3861 2565 2076 2032 162 58 3 chr15 90096383 90096728 -11283793 - MER47A DNA MER2_type -2 364 1 5415 157 62 18 chr15 90096728 90098089 -11282432 - L1MCa LINE L1 -4350 2076 521 243 61 0 0 chr15 90098093 90098126 -11282395 + (TC)n Simple_repeat Simple_repeat 1 33 0 732 208 0 8 chr15 90098128 90098248 -11282273 - FLAM_C SINE Alu -23 120 2 409 165 183 61 chr15 90098252 90098367 -11282154 - AluJo SINE Alu -160 142 14 2095 181 41 108 chr15 90098376 90098662 -11281859 - L1MCa LINE L1 -5900 526 222 1115 106 0 6 chr15 90098662 90098841 -11281680 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 2095 181 41 108 chr15 90098841 90098867 -11281654 - L1MCa LINE L1 -6204 222 196 1989 114 29 0 chr15 90098867 90099139 -11281382 - AluSx SINE Alu -32 280 1 2095 181 41 108 chr15 90099139 90099389 -11281132 - L1MCa LINE L1 -6230 196 1 233 300 14 21 chr15 90099447 90099587 -11280934 + (TA)n Simple_repeat Simple_repeat 1 139 0 2376 81 0 3 chr15 90099592 90099888 -11280633 - AluY SINE Alu -16 295 1 414 0 0 0 chr15 90100987 90101033 -11279488 + (TG)n Simple_repeat Simple_repeat 2 47 0 2107 119 0 0 chr15 90101466 90101759 -11278762 + AluSq SINE Alu 1 293 -20 4105 181 51 44 chr15 90101759 90101770 -11278751 - L1MB3 LINE L1 -3 6180 6171 2454 67 0 3 chr15 90101770 90102067 -11278454 + AluSx SINE Alu 1 296 -16 4105 181 51 44 chr15 90102067 90102441 -11278080 - L1MB3 LINE L1 -12 6171 5801 281 89 22 0 chr15 90102441 90102486 -11278035 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 4105 181 51 44 chr15 90102486 90103382 -11277139 - L1MB3 LINE L1 -382 5801 4903 282 312 43 32 chr15 90103382 90103475 -11277046 - MIR SINE MIR -99 109 16 655 228 16 57 chr15 90104461 90104478 -11276043 + L2 LINE L2 2548 2564 -750 2168 133 3 0 chr15 90104478 90104780 -11275741 - AluSx SINE Alu -9 303 1 655 228 16 57 chr15 90104780 90104955 -11275566 + L2 LINE L2 2564 2732 -582 469 227 85 14 chr15 90104958 90105099 -11275422 + L2 LINE L2 3158 3308 -5 372 82 0 0 chr15 90105847 90105896 -11274625 + THE1B LTR MaLR 1 49 -315 319 265 179 17 chr15 90106191 90106308 -11274213 + MIR SINE MIR 12 147 -115 393 252 71 16 chr15 90106331 90106458 -11274063 + MIR SINE MIR 124 257 -5 264 371 63 17 chr15 90106598 90106835 -11273686 - L2 LINE L2 -213 3059 2812 261 344 52 0 chr15 90106884 90106980 -11273541 + MIR SINE MIR 20 120 -142 2283 72 41 3 chr15 90106985 90107278 -11273243 - AluY SINE Alu -7 304 1 683 258 71 58 chr15 90107293 90107538 -11272983 + L1ME3 LINE L1 1630 1861 -4523 293 262 53 58 chr15 90107529 90107754 -11272767 + L1ME3 LINE L1 2064 2287 -4276 * 300 227 45 11 chr15 90107781 90107885 -11272636 + L1ME3 LINE L1 3797 3913 -2469 * 19911 30 2 0 chr15 90107880 90112286 -11268235 + L1PA4 LINE L1 1734 6149 -6 800 217 42 5 chr15 90112327 90112539 -11267982 + L1ME3 LINE L1 3968 4187 -2195 2346 197 40 37 chr15 90112583 90113154 -11267367 + MER34B LTR ERV1 10 565 0 2858 234 64 67 chr15 90113240 90113460 -11267061 + L1ME3 LINE L1 4256 4475 -1923 2224 104 0 3 chr15 90113460 90113769 -11266752 - AluSc SINE Alu -1 308 1 2858 234 64 67 chr15 90113769 90115225 -11265296 + L1ME3 LINE L1 4475 5918 -480 1960 132 3 13 chr15 90115225 90115548 -11264973 + AluSx SINE Alu 1 312 0 2858 234 64 67 chr15 90115548 90115940 -11264581 + L1ME3 LINE L1 5918 6310 -88 421 325 68 22 chr15 90116131 90116396 -11264125 - L2 LINE L2 -215 3057 2774 1519 156 50 0 chr15 90116396 90116678 -11263843 + AluJb SINE Alu 6 301 -11 421 325 68 22 chr15 90116678 90116772 -11263749 - L2 LINE L2 -498 2774 2686 23 86 0 0 chr15 90117735 90117793 -11262728 + GC_rich Low_complexity Low_complexity 1 58 0 308 325 48 8 chr15 90118976 90119102 -11261419 - L2 LINE L2 -1 3312 3182 475 228 32 79 chr15 90119888 90120077 -11260444 + MIR SINE MIR 77 256 -6 835 248 28 128 chr15 90120078 90120607 -11259914 - L2 LINE L2 -19 3294 2819 2053 211 76 16 chr15 90121680 90122164 -11258357 - MLT1H LTR MaLR -18 531 19 189 0 0 0 chr15 90122165 90122186 -11258335 + (CAAT)n Simple_repeat Simple_repeat 1 21 0 2263 81 7 0 chr15 90122205 90122503 -11258018 - AluSp SINE Alu -13 300 1 2075 256 143 23 chr15 90122652 90123361 -11257160 - L2 LINE L2 0 3313 2441 1633 167 7 4 chr15 90123361 90123642 -11256879 + AluJb SINE Alu 24 305 -7 2075 256 143 23 chr15 90123642 90123910 -11256611 - L2 LINE L2 -872 2441 2207 409 241 0 0 chr15 90123927 90124006 -11256515 + L2 LINE L2 3235 3313 0 2176 86 0 0 chr15 90124857 90125179 -11255342 - AluSc SINE Alu 0 325 4 1830 158 3 3 chr15 90125184 90125481 -11255040 - AluJb SINE Alu -15 297 1 358 286 0 0 chr15 90125484 90125568 -11254953 + MIR SINE MIR 64 147 -115 184 122 49 0 chr15 90125570 90125611 -11254910 + (ATGGTG)n Simple_repeat Simple_repeat 5 47 0 210 255 0 0 chr15 90126063 90126110 -11254411 + L2 LINE L2 3264 3310 -3 246 196 0 0 chr15 90126690 90126736 -11253785 - MIR SINE MIR -63 145 100 284 321 0 0 chr15 90127221 90127305 -11253216 - MIR3 SINE MIR 0 208 125 1452 182 40 4 chr15 90127317 90127592 -11252929 - AluJo SINE Alu -23 289 5 256 65 22 43 chr15 90127772 90127818 -11252703 - MSTB LTR MaLR -47 379 335 2827 117 41 0 chr15 90129239 90129650 -11250871 - MSTA LTR MaLR 0 428 1 230 232 0 37 chr15 90129675 90129757 -11250764 + (GGGTG)n Simple_repeat Simple_repeat 4 82 0 1341 186 6 58 chr15 90130392 90130704 -11249817 - AluJo SINE Alu -16 296 1 417 197 212 0 chr15 90130742 90130874 -11249647 + MLT1J2 LTR MaLR 3 162 -288 240 306 24 12 chr15 90130918 90131003 -11249518 + MLT1J1 LTR MaLR 361 446 0 337 317 56 25 chr15 90131332 90131493 -11249028 + MIR SINE MIR 75 240 -22 * 522 286 25 0 chr15 90131490 90131609 -11248912 + L2 LINE L2 3139 3260 -12 1196 35 0 0 chr15 90131637 90131782 -11248739 + AluY SINE Alu 164 308 -3 238 329 13 13 chr15 90132149 90132228 -11248293 - MIR3 SINE MIR -31 177 99 413 309 74 25 chr15 90132551 90132713 -11247808 - MLT1K LTR MaLR -417 171 2 1857 155 0 17 chr15 90132952 90133249 -11247272 - AluSx SINE Alu -20 292 1 253 333 172 0 chr15 90133388 90133481 -11247040 - L2 LINE L2 0 3272 3164 217 182 15 45 chr15 90133517 90133583 -11246938 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 2582 113 8 3 chr15 90134284 90134646 -11245875 - THE1B LTR MaLR 0 364 1 621 253 122 54 chr15 90134736 90134957 -11245564 + MIR SINE MIR 10 245 -17 231 222 137 98 chr15 90134980 90135133 -11245388 - MLT1J2 LTR MaLR -24 426 268 * 385 243 83 90 chr15 90135102 90135375 -11245146 - MLT1I LTR MaLR -123 286 50 267 290 116 63 chr15 90137218 90137425 -11243096 - L1ME LINE L1 -520 5601 5384 2038 154 133 13 chr15 90137677 90138059 -11242462 - MSTA LTR MaLR 0 428 1 1961 134 7 7 chr15 90138102 90138409 -11242112 + AluJb SINE Alu 1 307 -5 210 375 0 29 chr15 90138493 90138597 -11241924 - MIR SINE MIR -161 101 1 561 213 69 56 chr15 90138826 90138986 -11241535 + MER5B DNA MER1_type 3 164 -14 2461 54 0 0 chr15 90139350 90139646 -11240875 - AluY SINE Alu -15 296 1 2293 122 43 54 chr15 90140290 90140561 -11239960 + L1MA8 LINE L1 5856 6122 -169 1761 161 3 20 chr15 90140561 90140860 -11239661 + AluJb SINE Alu 1 294 -18 2293 122 43 54 chr15 90140860 90141029 -11239492 + L1MA8 LINE L1 6122 6291 0 1776 170 5 100 chr15 90142151 90142232 -11238289 - MLT1B LTR MaLR -2 388 301 2128 105 7 0 chr15 90142232 90142526 -11237995 - AluSx SINE Alu -16 296 1 1776 170 5 100 chr15 90142526 90142873 -11237648 - MLT1B LTR MaLR -89 301 1 202 303 30 0 chr15 90142888 90142954 -11237567 - MIR SINE MIR -10 252 185 1981 138 0 10 chr15 90143062 90143373 -11237148 + AluJb SINE Alu 1 308 -4 211 281 73 12 chr15 90143521 90143603 -11236918 - MIR SINE MIR -1 261 175 1879 210 30 9 chr15 90144126 90144555 -11235966 + L1M4 LINE L1 3685 4122 -2024 705 310 40 22 chr15 90144563 90144789 -11235732 + MIR SINE MIR 23 252 -10 4048 118 55 0 chr15 90146027 90146646 -11233875 + MER39B LTR ERV1 1 653 0 866 247 52 20 chr15 90147295 90147546 -11232975 + MIR SINE MIR 2 260 -2 803 137 38 23 chr15 90148725 90148856 -11231665 - FLAM_C SINE Alu 0 133 1 228 169 0 34 chr15 90148980 90149039 -11231482 + L1MC4 LINE L1 6636 6692 -1350 802 175 0 28 chr15 90149098 90149241 -11231280 + FLAM_C SINE Alu 5 143 0 2033 119 0 0 chr15 90149252 90149560 -11230961 + AluSx SINE Alu 1 308 0 2498 141 89 47 chr15 90149579 90150273 -11230248 - MER51A LTR ERV1 0 640 3 1068 128 0 0 chr15 90150273 90150429 -11230092 + FRAM SINE Alu 9 164 -12 543 351 5 5 chr15 90150535 90150723 -11229798 - MIR SINE MIR -16 246 59 180 179 0 0 chr15 90150946 90150985 -11229536 + T-rich Low_complexity Low_complexity 1 39 0 2382 74 7 0 chr15 90151568 90151878 -11228643 - AluSx SINE Alu 0 312 1 322 258 62 23 chr15 90152048 90152176 -11228345 + MER94 DNA DNA 1 133 -1 218 326 189 0 chr15 90152207 90152339 -11228182 + MIR SINE MIR 100 256 -6 841 157 0 0 chr15 90152577 90152717 -11227804 - AluJb SINE Alu -10 302 163 829 122 5 149 chr15 90152719 90152907 -11227614 - MER106A DNA MER1_type -69 167 7 197 338 141 25 chr15 90153262 90153460 -11227061 - MIR SINE MIR -6 256 36 244 297 16 0 chr15 90154677 90154741 -11225780 + MIR3 SINE MIR 111 175 -33 25 31 0 0 chr15 90154964 90154996 -11225525 + AT_rich Low_complexity Low_complexity 1 32 0 365 191 0 167 chr15 90155127 90155253 -11225268 - L1MC4 LINE L1 -1325 6717 6613 317 252 0 81 chr15 90155164 90155275 -11225246 + L1MC4 LINE L1 6608 6709 -1333 * 1561 175 48 70 chr15 90155341 90155740 -11224781 + L1MC5 LINE L1 6923 7312 -649 1229 182 0 0 chr15 90155803 90156006 -11224515 + MER3 DNA MER1_type 7 209 0 334 140 0 0 chr15 90155963 90156013 -11224508 - MER3 DNA MER1_type -119 90 41 * 464 194 32 0 chr15 90156018 90156111 -11224410 + L1MC5 LINE L1 7342 7437 -524 1811 179 9 3 chr15 90156118 90156436 -11224085 - MER2 DNA MER2_type -25 320 1 1188 202 42 85 chr15 90156436 90156955 -11223566 + L1MC5 LINE L1 7433 7929 -32 381 299 47 24 chr15 90157195 90157322 -11223199 + L1MEd LINE L1 561 690 -5429 403 254 14 78 chr15 90157328 90157470 -11223051 + MER94 DNA DNA 1 133 -1 902 149 174 0 chr15 90157580 90157741 -11222780 + MER5A DNA MER1_type 1 189 0 282 307 23 32 chr15 90158703 90158864 -11221657 - MER5A DNA MER1_type -16 162 1 689 305 14 14 chr15 90159080 90159290 -11221231 + MIR SINE MIR 53 262 0 404 298 101 6 chr15 90160206 90160374 -11220147 - MIR SINE MIR -59 203 20 222 263 21 42 chr15 90160710 90160805 -11219716 + L3 LINE CR1 1431 1523 -54 352 286 84 39 chr15 90160815 90160969 -11219552 - MER5B DNA MER1_type -17 161 1 3819 116 2 0 chr15 90160986 90161497 -11219024 + MER75 DNA T2_type 1 512 -2 6761 89 64 4 chr15 90162578 90164292 -11216229 - L1PA13 LINE L1 -1 6162 4396 369 265 59 10 chr15 90164422 90164524 -11215997 + MIR SINE MIR 37 143 -119 229 284 222 0 chr15 90164612 90164693 -11215828 + L2 LINE L2 3122 3220 -52 2536 87 0 0 chr15 90165566 90165876 -11214645 - AluSg SINE Alu 0 310 1 522 207 74 0 chr15 90166067 90166188 -11214333 - LTR16C LTR ERVL -2 489 360 1290 188 53 142 chr15 90166189 90166620 -11213901 - MLT2B1 LTR ERVL -1 413 21 451 213 118 37 chr15 90166727 90166863 -11213658 - LTR16C LTR ERVL -274 217 71 243 227 183 22 chr15 90167247 90167379 -11213142 - MIR SINE MIR -65 197 48 263 180 0 16 chr15 90167569 90167604 -11212917 + CT-rich Low_complexity Low_complexity 2 37 -24 2070 103 13 13 chr15 90167604 90167904 -11212617 - AluSx SINE Alu -12 300 1 263 180 0 16 chr15 90167904 90167929 -11212592 + CT-rich Low_complexity Low_complexity 37 61 0 3299 187 80 0 chr15 90169034 90169649 -11210872 - LTR65 LTR ERV1 -5 664 1 350 213 0 12 chr15 90169699 90169779 -11210742 - LTR30 LTR ERV1 -98 624 546 422 289 33 14 chr15 90170008 90170219 -11210302 + MER113 DNA MER1_type? 7 221 -300 915 187 103 126 chr15 90170450 90170888 -11209633 - MLT1A1 LTR MaLR 0 428 1 506 324 16 0 chr15 90171000 90171182 -11209339 + MIR SINE MIR 46 230 -32 197 101 51 72 chr15 90171668 90171806 -11208715 + (TTATA)n Simple_repeat Simple_repeat 1 135 0 219 260 137 0 chr15 90171882 90171955 -11208566 - L2 LINE L2 -2 3311 3229 881 200 46 27 chr15 90172125 90172490 -11208031 + MLT1C LTR MaLR 32 436 -31 1022 205 31 35 chr15 90175120 90175379 -11205142 - MIR SINE MIR 0 262 5 216 292 44 18 chr15 90175563 90175676 -11204845 + MIR SINE MIR 22 137 -71 866 184 43 11 chr15 90175676 90175861 -11204660 + MSTB2 LTR MaLR 1 191 -266 277 133 0 0 chr15 90175870 90175915 -11204606 + MIR SINE MIR 64 108 -154 227 309 44 83 chr15 90175928 90176132 -11204389 - L2 LINE L2 -532 2782 2587 1152 106 0 0 chr15 90176238 90176408 -11204113 + (TCCCC)n Simple_repeat Simple_repeat 4 173 0 188 185 19 0 chr15 90176413 90176467 -11204054 + CT-rich Low_complexity Low_complexity 2 56 0 348 364 72 26 chr15 90177075 90177377 -11203144 + L1ME1 LINE L1 3826 4140 -2006 389 309 85 43 chr15 90177431 90178005 -11202516 + L1ME1 LINE L1 4156 4775 -1371 2086 145 3 0 chr15 90178005 90178309 -11202212 + AluSx SINE Alu 6 310 -2 389 309 85 43 chr15 90178309 90178547 -11201974 + L1ME1 LINE L1 4775 5002 -1144 1707 250 39 5 chr15 90178557 90178989 -11201532 + L1ME1 LINE L1 5715 6161 -5 989 222 31 27 chr15 90179179 90179436 -11201085 - MIR SINE MIR 0 262 5 302 369 53 25 chr15 90179745 90180100 -11200421 + L1MC/D LINE L1 5463 5827 -1981 1417 235 7 10 chr15 90180136 90180434 -11200087 - MLT1E2 LTR MaLR 0 626 330 7642 47 2 0 chr15 90180441 90181814 -11198707 - L1PA5 LINE L1 0 6154 4774 1776 59 0 0 chr15 90181814 90182034 -11198487 + L1PA5 LINE L1 4535 4754 -1392 1055 256 97 22 chr15 90182034 90182354 -11198167 - MLT1E2 LTR MaLR -280 344 1 1939 158 23 40 chr15 90182654 90182725 -11197796 - MER2 DNA MER2_type 0 344 273 2089 122 21 0 chr15 90182725 90183011 -11197510 + AluSq SINE Alu 1 292 -21 1939 158 23 40 chr15 90183011 90183288 -11197233 - MER2 DNA MER2_type -71 273 2 1382 207 114 3 chr15 90183426 90183769 -11196752 - L1MDb LINE L1 -4390 2150 1770 663 221 98 54 chr15 90183779 90183983 -11196538 - MER20 DNA MER1_type -6 213 1 36 0 0 0 chr15 90184016 90184052 -11196469 + AT_rich Low_complexity Low_complexity 1 36 0 1468 260 43 61 chr15 90184053 90184474 -11196047 - L1MDb LINE L1 -4828 1712 1285 2578 65 0 0 chr15 90184474 90184783 -11195738 - AluY SINE Alu -2 309 1 1468 260 43 61 chr15 90184783 90184992 -11195529 - L1MDb LINE L1 -5255 1285 1114 2143 196 99 11 chr15 90184992 90185456 -11195065 - MLT1D LTR MaLR 0 505 1 1468 260 43 61 chr15 90185456 90185658 -11194863 - L1MDb LINE L1 -5426 1114 910 378 0 0 0 chr15 90185972 90186014 -11194507 + (GA)n Simple_repeat Simple_repeat 1 42 0 791 327 9 28 chr15 90186229 90186550 -11193971 - L1MDb LINE L1 -6210 330 16 241 273 71 91 chr15 90186992 90187091 -11193430 + L2 LINE L2 3176 3272 0 604 251 85 60 chr15 90187251 90187534 -11192987 - L2 LINE L2 -36 3277 2988 2370 101 3 0 chr15 90187971 90188269 -11192252 - AluSx SINE Alu -13 299 1 289 270 96 52 chr15 90188340 90188455 -11192066 + L2 LINE L2 3153 3272 0 660 211 45 8 chr15 90188695 90188828 -11191693 - MIR SINE MIR -119 143 6 580 254 39 29 chr15 90188835 90189038 -11191483 + MIR SINE MIR 17 224 -38 520 209 79 7 chr15 90189661 90189800 -11190721 + L1ME1 LINE L1 6018 6166 0 256 215 89 0 chr15 90190041 90190120 -11190401 - L2 LINE L2 -30 3242 3157 729 240 67 48 chr15 90190320 90190560 -11189961 + MIR SINE MIR 16 262 0 433 293 70 39 chr15 90190621 90191087 -11189434 - L2 LINE L2 -117 3196 2728 208 243 100 14 chr15 90191934 90192004 -11188517 + MIR SINE MIR 47 122 -140 2232 115 0 0 chr15 90192932 90193236 -11187285 - AluY SINE Alu -7 304 1 210 71 0 0 chr15 90193381 90193409 -11187112 + (TA)n Simple_repeat Simple_repeat 2 29 0 40859 31 1 2 chr15 90193571 90199166 -11181355 - L1PA3 LINE L1 0 6155 566 218 256 23 12 chr15 90199564 90199650 -11180871 + (TA)n Simple_repeat Simple_repeat 2 88 0 247 280 0 54 chr15 90199979 90200072 -11180449 + L2 LINE L2 3226 3313 0 384 346 87 17 chr15 90200647 90200878 -11179643 - L2 LINE L2 -25 3247 3001 278 275 0 77 chr15 90201760 90201851 -11178670 + L2 LINE L2 3154 3237 -35 978 163 19 6 chr15 90202761 90202921 -11177600 - AluJb SINE Alu -18 294 133 330 309 36 9 chr15 90203413 90203523 -11176998 - MIR SINE MIR -64 198 86 446 292 37 8 chr15 90204062 90204235 -11176286 + MIR SINE MIR 2 178 -62 1502 129 21 9 chr15 90204326 90204559 -11175962 + L1PB4 LINE L1 5918 6153 -3 22 56 0 0 chr15 90205732 90205768 -11174753 + AT_rich Low_complexity Low_complexity 1 36 0 2309 74 0 7 chr15 90205966 90206277 -11174244 - AluY SINE Alu 0 309 1 1961 142 3 16 chr15 90206471 90206774 -11173747 - AluSq SINE Alu 0 313 15 381 246 104 93 chr15 90207260 90207369 -11173152 - L1P LINE L1 -1620 4526 4420 2323 74 0 0 chr15 90207369 90207679 -11172842 + AluY SINE Alu 1 310 0 381 246 104 93 chr15 90207679 90207785 -11172736 - L1P LINE L1 -1726 4420 4317 813 11 0 0 chr15 90207785 90207876 -11172645 - L1PA4 LINE L1 -3 6152 6062 381 246 104 93 chr15 90207876 90208165 -11172356 - L1P LINE L1 -1829 4317 4014 394 348 20 4 chr15 90208479 90208723 -11171798 - L1M4 LINE L1 -3587 2559 2312 1475 97 0 0 chr15 90208732 90208928 -11171593 - AluSq SINE Alu 0 313 118 1546 221 75 36 chr15 90208934 90209374 -11171147 + MER31B LTR ERV1 1 457 -9 263 257 16 104 chr15 90209946 90210129 -11170392 - HAL1 LINE L1 -851 1656 1490 272 306 27 18 chr15 90210132 90210243 -11170278 + MIR SINE MIR 97 208 -54 201 39 0 0 chr15 90211088 90211114 -11169407 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 210 37 0 0 chr15 90211676 90211703 -11168818 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 772 183 7 13 chr15 90212056 90212209 -11168312 - L1ME LINE L1 -411 5751 5600 837 274 132 22 chr15 90212483 90212801 -11167720 + MLT1I LTR MaLR 57 409 0 1814 164 0 7 chr15 90212846 90213139 -11167382 - AluJb SINE Alu -21 291 1 440 251 82 29 chr15 90213343 90213514 -11167007 + MIR SINE MIR 62 241 -21 2276 104 16 0 chr15 90214895 90215203 -11165318 - AluSp SINE Alu 0 313 1 219 103 0 0 chr15 90215224 90215263 -11165258 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2129 116 0 3 chr15 90215431 90215732 -11164789 + AluSx SINE Alu 1 300 -12 429 54 0 0 chr15 90216130 90216186 -11164335 + (TG)n Simple_repeat Simple_repeat 2 57 0 25 65 0 0 chr15 90216646 90216692 -11163829 + AT_rich Low_complexity Low_complexity 1 46 0 652 171 0 100 chr15 90216701 90216841 -11163680 - FLAM_A SINE Alu -7 126 1 1715 179 19 7 chr15 90218306 90218613 -11161908 + AluJo SINE Alu 1 311 -1 202 282 45 64 chr15 90218749 90218859 -11161662 + L2 LINE L2 2937 3044 -228 783 296 5 5 chr15 90218972 90219195 -11161326 - MIR SINE MIR -22 240 18 1189 211 32 80 chr15 90219262 90219674 -11160847 + L2 LINE L2 2358 2749 -565 1072 244 57 32 chr15 90219681 90220050 -11160471 + L2 LINE L2 2935 3312 -1 459 191 184 7 chr15 90220147 90220283 -11160238 + MIR SINE MIR 76 235 -27 997 212 165 41 chr15 90220294 90220634 -11159887 - LTR16A LTR ERVL -10 440 59 276 149 0 0 chr15 90221502 90221549 -11158972 + (TC)n Simple_repeat Simple_repeat 2 48 0 1079 161 138 47 chr15 90221550 90221941 -11158580 - MER101B LTR ERV1 -73 497 4 536 183 127 8 chr15 90221941 90222060 -11158461 - MER3 DNA MER1_type -62 147 48 1946 170 6 3 chr15 90222222 90222533 -11157988 - AluJo SINE Alu 0 312 1 190 356 17 17 chr15 90222576 90222694 -11157827 - MIR SINE MIR -122 140 23 618 253 52 71 chr15 90222862 90223044 -11157477 - LTR24B LTR ERV1 -7 569 396 2167 127 7 0 chr15 90223044 90223343 -11157178 - AluSx SINE Alu -11 301 1 618 253 52 71 chr15 90223343 90223528 -11156993 - LTR24B LTR ERV1 -180 396 209 408 175 3 30 chr15 90223573 90223671 -11156850 - LTR24B LTR ERV1 -372 93 1 1884 139 0 14 chr15 90223724 90224019 -11156502 - AluJo SINE Alu -21 291 1 1530 163 19 19 chr15 90224736 90225000 -11155521 - AluJo SINE Alu -48 264 1 1266 220 100 17 chr15 90225247 90225617 -11154904 - MER39 LTR ERV1 0 707 175 320 260 61 42 chr15 90225658 90225797 -11154724 - LTR48B LTR ERV1 -504 149 1 2374 106 0 0 chr15 90226787 90227099 -11153422 - AluSx SINE Alu 0 312 1 269 279 12 0 chr15 90227333 90227419 -11153102 + MIR SINE MIR 44 130 -78 245 319 52 0 chr15 90228556 90228672 -11151849 + L2 LINE L2 3148 3269 -3 284 118 0 20 chr15 90229103 90229154 -11151367 + (TTC)n Simple_repeat Simple_repeat 1 50 0 2339 105 7 0 chr15 90229172 90229477 -11151044 - AluSg SINE Alu -1 309 3 829 129 0 8 chr15 90229484 90229616 -11150905 - FLAM_C SINE Alu 0 133 3 915 111 0 0 chr15 90230349 90230475 -11150046 + FLAM_C SINE Alu 1 126 -7 26 50 0 0 chr15 90230475 90230515 -11150006 + AT_rich Low_complexity Low_complexity 1 40 0 2059 137 0 37 chr15 90230536 90230858 -11149663 + AluSx SINE Alu 1 310 -2 566 232 65 0 chr15 90231045 90231200 -11149321 + MIR SINE MIR 49 213 -49 1142 254 26 26 chr15 90231404 90231750 -11148771 + MER113 DNA MER1_type? 175 520 -1 676 286 25 0 chr15 90232070 90232273 -11148248 - MIR SINE MIR 0 262 55 361 273 109 42 chr15 90232962 90233127 -11147394 - MER5A DNA MER1_type 0 189 14 2141 93 11 0 chr15 90234138 90234418 -11146103 - AluSp SINE Alu 0 313 31 2172 107 38 0 chr15 90234564 90234854 -11145667 - AluSx SINE Alu -11 301 1 209 357 57 36 chr15 90234874 90235014 -11145507 - L2 LINE L2 -5 3267 3125 1347 32 0 0 chr15 90235097 90235254 -11145267 + L1PA5 LINE L1 5997 6153 -1 378 247 35 58 chr15 90235423 90235597 -11144924 - MIR3 SINE MIR -20 188 19 1326 221 88 50 chr15 90235688 90236108 -11144413 - MER39 LTR ERV1 -11 696 261 235 273 40 40 chr15 90236082 90236181 -11144340 - LTR48B LTR ERV1 -542 102 4 * 1770 155 0 32 chr15 90236614 90236924 -11143597 - AluJb SINE Alu -10 302 3 3103 190 56 25 chr15 90237288 90238004 -11142517 - L1MB8 LINE L1 -9 6169 5432 517 202 24 40 chr15 90238005 90238129 -11142392 + MER103 DNA DNA 45 166 0 1781 167 0 16 chr15 90238514 90238841 -11141680 - AluJb SINE Alu 0 312 3 637 196 145 17 chr15 90238902 90239081 -11141440 - MIR SINE MIR -32 230 29 21 36 0 0 chr15 90239126 90239154 -11141367 + AT_rich Low_complexity Low_complexity 1 28 0 315 0 0 0 chr15 90239372 90239407 -11141114 + (CA)n Simple_repeat Simple_repeat 1 35 0 452 254 27 60 chr15 90239885 90240070 -11140451 + MIR SINE MIR 84 262 0 314 342 45 7 chr15 90240377 90240532 -11139989 + MIR SINE MIR 53 213 -49 1177 204 24 88 chr15 90240648 90240987 -11139534 - MLT1B LTR MaLR -66 324 8 242 267 106 56 chr15 90241523 90241703 -11138818 + MER5A DNA MER1_type 1 189 0 245 82 41 20 chr15 90242216 90242265 -11138256 - MER5B DNA MER1_type -111 67 18 298 271 41 35 chr15 90242340 90242510 -11138011 + MIR SINE MIR 84 254 -8 419 282 69 8 chr15 90242743 90242874 -11137647 - MIR SINE MIR -87 175 37 233 73 0 24 chr15 90243197 90243238 -11137283 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 671 51 0 2 chr15 90243238 90243331 -11137190 - L1PA5 LINE L1 -24 6130 6040 208 398 0 8 chr15 90244496 90244614 -11135907 - MIR SINE MIR -118 144 28 224 227 40 53 chr15 90245318 90245393 -11135128 - L2 LINE L2 -2 3311 3238 1099 199 27 14 chr15 90245527 90245748 -11134773 - MER58A DNA MER1_type 0 224 1 308 320 87 17 chr15 90246578 90246750 -11133771 - MIR SINE MIR -77 185 2 346 251 135 13 chr15 90246909 90247064 -11133457 + MIR SINE MIR 33 208 -54 1020 240 9 4 chr15 90247179 90247412 -11133109 + MIR SINE MIR 29 262 0 1907 157 10 19 chr15 90247639 90247952 -11132569 + AluJb SINE Alu 1 310 -2 244 287 139 0 chr15 90248375 90248490 -11132031 - L2 LINE L2 -3 3310 3180 548 195 9 9 chr15 90249032 90249145 -11131376 + HERVL LTR ERVL 1 113 -5541 350 61 0 20 chr15 90249180 90249229 -11131292 + MADE1 DNA Mariner 32 79 -1 489 202 9 9 chr15 90250226 90250335 -11130186 + HERVL LTR ERVL 1 109 -5545 2613 129 48 5 chr15 90250405 90250817 -11129704 - L1PA16 LINE L1 -9 6157 5728 7984 195 49 2 chr15 90250817 90252768 -11127753 + HERVL LTR ERVL 102 2216 -3548 183 129 0 0 chr15 90253141 90253172 -11127349 + (CCAA)n Simple_repeat Simple_repeat 1 31 0 225 191 0 0 chr15 90253555 90253597 -11126924 + GA-rich Low_complexity Low_complexity 1 42 0 656 310 119 68 chr15 90254311 90254859 -11125662 - MLT1G1 LTR MaLR 0 595 20 1297 156 9 5 chr15 90254912 90255123 -11125398 - MER20 DNA MER1_type -7 212 1 516 305 30 6 chr15 90255135 90255302 -11125219 + MER5B DNA MER1_type 6 176 -2 23 54 0 0 chr15 90255859 90255896 -11124625 + AT_rich Low_complexity Low_complexity 1 37 0 349 268 93 38 chr15 90255953 90256136 -11124385 - MIR SINE MIR -44 218 26 326 285 139 13 chr15 90257104 90257255 -11123266 - MIR3 SINE MIR -1 207 38 524 244 57 62 chr15 90257636 90257829 -11122692 - MLT1L LTR MaLR -417 198 7 643 323 30 4 chr15 90257839 90258071 -11122450 + MIR SINE MIR 25 262 0 1816 269 292 34 chr15 90258262 90260021 -11120500 + L2 LINE L2 7 2218 -1096 501 264 0 21 chr15 90260022 90260166 -11120355 + L2 LINE L2 2511 2651 -663 445 258 142 0 chr15 90260171 90260326 -11120195 - L2 LINE L2 -226 3087 2911 595 259 76 45 chr15 90260541 90260765 -11119756 + MER102b DNA MER1_type 103 333 -8 404 266 63 14 chr15 90261825 90261968 -11118553 + MIR SINE MIR 110 259 -3 330 296 66 21 chr15 90262872 90263247 -11117274 + L1ME4a LINE L1 5561 6106 -15 386 266 83 62 chr15 90263253 90263445 -11117076 - L2 LINE L2 -1 3312 3117 256 221 103 103 chr15 90263538 90263674 -11116847 + MER58C DNA MER1_type 79 214 -1 241 282 56 0 chr15 90263675 90263746 -11116775 - L2 LINE L2 -209 3063 2989 373 324 86 31 chr15 90264049 90264271 -11116250 - MIR SINE MIR -9 253 20 423 56 0 0 chr15 90264393 90264447 -11116074 + (TCC)n Simple_repeat Simple_repeat 3 56 0 416 335 7 14 chr15 90264839 90265018 -11115503 + MIR3 SINE MIR 1 176 -52 736 202 139 3 chr15 90265038 90265568 -11114953 - LTR50 LTR ERVL -3 792 1 353 165 12 35 chr15 90265646 90265731 -11114790 - L1MA4 LINE L1 -3 6297 6215 2359 49 28 0 chr15 90265735 90266020 -11114501 + AluY SINE Alu 17 309 -2 30 27 0 0 chr15 90266123 90266160 -11114361 + AT_rich Low_complexity Low_complexity 1 37 0 269 304 26 43 chr15 90266160 90266275 -11114246 - MIR3 SINE MIR -24 184 72 693 188 134 5 chr15 90266350 90266512 -11114009 + MER5A DNA MER1_type 4 189 0 288 213 0 0 chr15 90266676 90266780 -11113741 + (CA)n Simple_repeat Simple_repeat 1 104 0 258 318 16 54 chr15 90266785 90266914 -11113607 + L2 LINE L2 2808 2931 -382 9435 159 47 5 chr15 90267252 90268967 -11111554 + L1 LINE L1 3198 4985 -1161 261 222 0 0 chr15 90270390 90270453 -11110068 + CT-rich Low_complexity Low_complexity 4 66 0 269 301 7 84 chr15 90270539 90270682 -11109839 - MIR3 SINE MIR -62 146 15 880 260 147 31 chr15 90271147 90271566 -11108955 - MLT1J2 LTR MaLR 0 446 1 2186 134 0 0 chr15 90271903 90272208 -11108313 - AluSx SINE Alu -7 305 1 289 294 15 0 chr15 90272296 90272364 -11108157 + MIR SINE MIR 81 149 -59 413 187 86 65 chr15 90272598 90272737 -11107784 - MLT1K LTR MaLR -341 247 106 208 121 0 0 chr15 90272814 90272847 -11107674 + (CA)n Simple_repeat Simple_repeat 1 33 0 2304 79 3 0 chr15 90273009 90273299 -11107222 + L1PB1 LINE L1 5860 6150 -1 385 235 70 75 chr15 90274724 90274911 -11105610 + MARNA DNA Mariner 171 356 -230 283 255 106 11 chr15 90275075 90275169 -11105352 + MARNA DNA Mariner 343 445 -141 195 280 20 0 chr15 90275279 90275329 -11105192 + MER5A DNA MER1_type 1 51 -138 409 309 94 17 chr15 90275334 90275515 -11105006 + MER115 DNA AcHobo 3 197 -496 459 287 96 6 chr15 90275645 90275812 -11104709 + MER115 DNA AcHobo 512 693 0 393 304 72 7 chr15 90275880 90276018 -11104503 + MER5A DNA MER1_type 40 186 -3 183 358 73 33 chr15 90275883 90276034 -11104487 - MER5A DNA MER1_type -31 158 2 * 961 190 0 44 chr15 90276562 90276806 -11103715 + AluJo SINE Alu 87 321 0 2037 207 30 26 chr15 90277181 90277644 -11102877 - MLT1C LTR MaLR -2 465 1 359 105 0 3 chr15 90278282 90278337 -11102184 + AluSx SINE Alu 2 47 -254 2634 99 8 8 chr15 90278337 90278692 -11101829 - THE1A LTR MaLR 0 355 1 1736 139 0 8 chr15 90278692 90278958 -11101563 + AluSx SINE Alu 43 306 -6 746 251 24 70 chr15 90279097 90279435 -11101086 - L1MC/D LINE L1 -396 5725 5458 611 249 108 60 chr15 90279751 90280000 -11100521 + MIR SINE MIR 2 262 0 1719 101 16 8 chr15 90280131 90280379 -11100142 - L1PA14 LINE L1 -2 6159 5910 375 252 0 0 chr15 90280731 90280976 -11099545 + (CA)n Simple_repeat Simple_repeat 1 245 0 285 250 0 0 chr15 90280998 90281170 -11099351 + (CA)n Simple_repeat Simple_repeat 1 172 0 402 220 0 0 chr15 90281195 90281372 -11099149 + (CA)n Simple_repeat Simple_repeat 2 178 0 271 221 23 35 chr15 90281474 90281560 -11098961 + CT-rich Low_complexity Low_complexity 2 86 0 1915 214 63 0 chr15 90281956 90282334 -11098187 - MER93a LTR ERV1 0 402 1 2265 100 0 6 chr15 90283532 90283843 -11096678 + AluSc SINE Alu 1 309 0 213 252 143 50 chr15 90284460 90284579 -11095942 + MIR3 SINE MIR 1 130 -78 281 188 43 0 chr15 90285407 90285476 -11095045 - MLT1L LTR MaLR 0 615 544 2041 138 3 0 chr15 90285477 90285774 -11094747 - AluSx SINE Alu -14 298 1 437 279 74 13 chr15 90285774 90286003 -11094518 - L1M4 LINE L1 -2079 4067 3825 630 303 77 9 chr15 90287964 90288185 -11092336 - MIR SINE MIR -15 247 12 2251 105 7 0 chr15 90290500 90290804 -11089717 - AluSx SINE Alu -6 306 1 209 316 71 10 chr15 90290929 90291027 -11089494 + MIR SINE MIR 48 134 -74 22 0 0 0 chr15 90291636 90291658 -11088863 + AT_rich Low_complexity Low_complexity 1 22 0 515 250 223 14 chr15 90291747 90291967 -11088554 - L1ME LINE L1 -368 6589 6324 2809 261 69 50 chr15 90292488 90293214 -11087307 - L1MCc LINE L1 -3679 3262 2552 1993 157 0 3 chr15 90293214 90293514 -11087007 + AluSx SINE Alu 1 299 -13 2809 261 69 50 chr15 90293514 90294463 -11086058 - L1MCc LINE L1 -4389 2552 1371 1803 122 4 4 chr15 90294463 90294764 -11085757 - AluSp SINE Alu 0 339 39 2809 261 69 50 chr15 90294764 90294990 -11085531 - L1MCc LINE L1 -5570 1371 1151 1763 202 95 10 chr15 90295010 90295421 -11085100 - L1ME1 LINE L1 -2 6164 5719 2585 14 24 7 chr15 90296092 90296383 -11084138 + AluYb8 SINE Alu 17 312 -6 260 293 47 28 chr15 90296712 90296818 -11083703 + L2 LINE L2 2924 3031 -241 244 382 0 18 chr15 90297703 90297813 -11082708 - MER5A DNA MER1_type -63 126 19 263 359 147 12 chr15 90298006 90298176 -11082345 + L2 LINE L2 3080 3272 0 1039 263 129 14 chr15 90298605 90298970 -11081551 - L1MC4a LINE L1 -1902 5906 5500 269 363 0 38 chr15 90299672 90299803 -11080718 + MIR SINE MIR 43 167 -65 386 303 15 70 chr15 90300209 90300381 -11080140 - MIR SINE MIR -62 146 4 206 292 31 42 chr15 90300692 90300788 -11079733 - MIR3 SINE MIR -9 199 105 1776 156 0 57 chr15 90301120 90301434 -11079087 - AluJb SINE Alu -16 296 1 452 301 126 10 chr15 90302316 90302522 -11077999 + MIR SINE MIR 29 258 -4 191 323 108 0 chr15 90303034 90303127 -11077394 + L2 LINE L2 3161 3263 -9 204 253 192 40 chr15 90303225 90303324 -11077197 + MIR SINE MIR 31 144 -64 365 340 7 21 chr15 90304108 90304249 -11076272 - L2 LINE L2 0 3272 3134 673 218 24 35 chr15 90304344 90304514 -11076007 - MIR SINE MIR -64 198 31 529 278 76 26 chr15 90305399 90305658 -11074863 - LTR33 LTR ERVL -22 501 227 497 152 63 85 chr15 90305911 90305945 -11074576 - L1MA9 LINE L1 -341 5963 5930 1524 121 17 0 chr15 90305945 90306177 -11074344 - L1MA7 LINE L1 0 6291 6056 497 152 63 85 chr15 90306177 90306288 -11074233 - L1MA9 LINE L1 -374 5930 5814 293 68 23 0 chr15 90306296 90306340 -11074181 + (TC)n Simple_repeat Simple_repeat 1 45 0 1930 137 7 0 chr15 90306353 90306638 -11073883 - AluSx SINE Alu -5 307 21 1026 161 17 0 chr15 90306638 90306812 -11073709 - L1MA9 LINE L1 -459 5832 5656 248 177 0 97 chr15 90306844 90306906 -11073615 + MIR SINE MIR 195 250 -12 1238 201 4 16 chr15 90308446 90308700 -11071821 + AluJo SINE Alu 38 288 -24 265 157 59 20 chr15 90308700 90308802 -11071719 + (TA)n Simple_repeat Simple_repeat 1 106 0 687 248 70 40 chr15 90309252 90309607 -11070914 - MLT1J LTR MaLR -6 505 101 467 196 81 34 chr15 90309795 90309943 -11070578 + L1ME4a LINE L1 5967 6121 0 215 333 111 11 chr15 90313166 90313256 -11067265 - MIR3 SINE MIR -25 183 85 466 228 10 10 chr15 90313455 90313556 -11066965 - L2 LINE L2 0 3272 3172 279 243 15 110 chr15 90313972 90314108 -11066413 - MLT1J LTR MaLR -9 502 380 296 289 15 89 chr15 90314815 90314950 -11065571 - MLT1J LTR MaLR -153 358 234 751 240 5 46 chr15 90315101 90315297 -11065224 - MER5A DNA MER1_type -1 188 1 549 141 1 155 chr15 90316653 90316856 -11063665 + L1MA8 LINE L1 6115 6290 -1 2290 120 0 0 chr15 90317324 90317625 -11062896 - AluSx SINE Alu -11 301 1 427 301 61 15 chr15 90319190 90319358 -11061163 - MIR SINE MIR -5 257 77 1284 191 4 25 chr15 90319358 90319599 -11060922 - MER46A DNA MER2_type 0 236 1 427 301 61 15 chr15 90319599 90319626 -11060895 - MIR SINE MIR -185 77 53 191 302 23 0 chr15 90319816 90319859 -11060662 + L2 LINE L2 3211 3254 -18 2057 118 0 70 chr15 90320203 90320533 -11059988 + AluSx SINE Alu 1 307 -5 802 204 6 6 chr15 90321896 90322246 -11058275 + GA-rich Low_complexity Low_complexity 1 350 0 243 190 10 50 chr15 90322269 90322369 -11058152 + GA-rich Low_complexity Low_complexity 1 96 0 315 295 121 46 chr15 90324160 90324465 -11056056 + LTR16C LTR ERVL 159 486 -5 256 403 15 15 chr15 90324721 90324922 -11055599 - L3 LINE CR1 -354 1223 1023 234 0 0 0 chr15 90325389 90325415 -11055106 + (TG)n Simple_repeat Simple_repeat 1 26 0 869 209 15 20 chr15 90326254 90326296 -11054225 - L1MB5 LINE L1 -11 6163 6122 1854 185 65 3 chr15 90326296 90326636 -11053885 - MER46B DNA MER2_type 0 236 1 869 209 15 20 chr15 90326636 90326789 -11053732 - L1MB5 LINE L1 -52 6122 5969 829 216 64 125 chr15 90326789 90327228 -11053293 - L1ME3A LINE L1 -5 6165 5754 1142 219 39 18 chr15 90327277 90327556 -11052965 + LTR16A LTR ERVL 118 402 -48 964 246 64 49 chr15 90327582 90327885 -11052636 - L1ME3A LINE L1 -420 5750 5440 1776 163 20 3 chr15 90327885 90328185 -11052336 - AluSx SINE Alu -7 305 1 964 246 64 49 chr15 90328185 90328210 -11052311 - L1ME3A LINE L1 -730 5440 5417 1778 128 91 14 chr15 90328270 90328566 -11051955 - L1MC1 LINE L1 -2 6331 6013 33 43 0 0 chr15 90328641 90328688 -11051833 + AT_rich Low_complexity Low_complexity 1 47 0 2510 70 0 0 chr15 90328896 90329198 -11051323 + AluY SINE Alu 1 302 -9 185 333 154 8 chr15 90329384 90329501 -11051020 + MIR3 SINE MIR 60 193 -15 5054 222 96 56 chr15 90329535 90331380 -11049141 + L1M4b LINE L1 3 1902 -4948 2493 78 3 0 chr15 90331380 90331689 -11048832 + AluY SINE Alu 1 310 -1 232 273 0 0 chr15 90331918 90331973 -11048548 - L1MB5 LINE L1 -525 5808 5754 245 274 121 40 chr15 90332559 90332683 -11047838 - MLT1I LTR MaLR -197 212 79 805 250 65 5 chr15 90334205 90334421 -11046100 + MIR SINE MIR 6 234 -28 2329 97 0 3 chr15 90334549 90334847 -11045674 + AluSp SINE Alu 1 297 -16 369 62 0 0 chr15 90335027 90335075 -11045446 + (TG)n Simple_repeat Simple_repeat 2 49 0 186 305 17 0 chr15 90335266 90335325 -11045196 - MIR SINE MIR -13 249 190 344 248 215 42 chr15 90335339 90335553 -11044968 - MIR SINE MIR -2 260 10 284 304 50 13 chr15 90336031 90336139 -11044382 - MIR SINE MIR -68 140 58 213 65 0 0 chr15 90337589 90337620 -11042901 + (T)n Simple_repeat Simple_repeat 1 31 0 187 325 112 25 chr15 90338487 90338684 -11041837 - MIR SINE MIR 0 262 49 467 217 9 17 chr15 90339327 90339442 -11041079 - MIR3 SINE MIR -12 196 83 340 214 86 29 chr15 90339990 90340130 -11040391 - L1ME4a LINE L1 -10 6111 5964 228 221 162 0 chr15 90340245 90340313 -11040208 - L1ME3A LINE L1 -104 6066 5988 21 57 0 0 chr15 90340324 90340359 -11040162 + AT_rich Low_complexity Low_complexity 1 35 0 333 47 0 0 chr15 90340402 90340445 -11040076 + (CA)n Simple_repeat Simple_repeat 1 43 0 4220 180 14 27 chr15 90340446 90341285 -11039236 - L1MC3 LINE L1 -92 7693 6866 13342 147 19 85 chr15 90341320 90343536 -11036985 - L1MA3 LINE L1 0 7724 5363 1748 131 0 14 chr15 90343536 90343811 -11036710 - L1PA13 LINE L1 -6 6157 5887 13342 147 19 85 chr15 90343811 90347772 -11032749 - L1MA3 LINE L1 -2361 5363 16 2498 172 43 35 chr15 90347779 90348267 -11032254 - L1MC3 LINE L1 -921 6864 6373 201 175 0 0 chr15 90348457 90348497 -11032024 + (TATG)n Simple_repeat Simple_repeat 4 43 0 491 283 47 19 chr15 90348513 90348725 -11031796 - L1MEc LINE L1 -4579 2246 2029 234 259 133 21 chr15 90348887 90349030 -11031491 - L1MEc LINE L1 -4852 1690 1532 271 245 101 37 chr15 90349044 90349232 -11031289 - L1MEc LINE L1 -5053 1581 1382 600 331 85 30 chr15 90350293 90350658 -11029863 + L1ME3A LINE L1 5527 5911 -259 373 244 168 0 chr15 90350674 90350805 -11029716 - MLT1H LTR MaLR -15 534 382 1986 183 5 81 chr15 90351142 90351562 -11028959 + MLT1B LTR MaLR 3 390 0 2265 104 0 7 chr15 90351591 90351890 -11028631 + AluSg SINE Alu 1 297 -13 349 305 75 14 chr15 90352246 90352409 -11028112 - MIR SINE MIR -61 147 26 434 182 0 13 chr15 90352856 90352933 -11027588 - MER63 DNA MER1_type -314 746 671 388 330 66 14 chr15 90353029 90353241 -11027280 + MIR SINE MIR 34 256 -6 283 248 178 23 chr15 90353303 90353432 -11027089 - MIR SINE MIR -3 259 111 340 207 14 28 chr15 90354189 90354334 -11026187 + CT-rich Low_complexity Low_complexity 3 145 0 502 303 122 9 chr15 90355072 90355293 -11025228 + MIR SINE MIR 17 262 0 53 14 0 14 chr15 90355293 90355344 -11025177 + AT_rich Low_complexity Low_complexity 1 52 -18 1992 130 0 53 chr15 90355344 90355666 -11024855 - AluSx SINE Alu -7 305 1 53 14 0 14 chr15 90355666 90355685 -11024836 + AT_rich Low_complexity Low_complexity 52 70 0 185 283 65 0 chr15 90355700 90355746 -11024775 + L2 LINE L2 3008 3056 -257 443 332 142 40 chr15 90356004 90356230 -11024291 - L2 LINE L2 -4 3268 3020 567 289 52 21 chr15 90356273 90356626 -11023895 - LTR16C LTR ERVL -8 483 89 2135 114 3 7 chr15 90357329 90357628 -11022893 - AluSx SINE Alu -14 298 1 508 345 15 15 chr15 90357712 90357909 -11022612 + MIR SINE MIR 14 210 -52 2142 126 0 7 chr15 90358211 90358512 -11022009 + AluSx SINE Alu 1 299 -13 558 294 91 40 chr15 90358557 90359043 -11021478 + L1ME3 LINE L1 5317 5829 -333 333 301 14 27 chr15 90359112 90359260 -11021261 + L1ME LINE L1 5666 5811 -351 23 0 0 0 chr15 90359608 90359631 -11020890 + AT_rich Low_complexity Low_complexity 1 23 0 1382 93 0 0 chr15 90360195 90360367 -11020154 - AluSg/x SINE Alu -19 293 122 618 85 0 0 chr15 90360607 90360689 -11019832 + L1MA1 LINE L1 6220 6301 -1 1402 67 4 5 chr15 90360986 90361174 -11019347 - L1PA4 LINE L1 -250 5918 5733 448 39 0 0 chr15 90361174 90361224 -11019297 + L1PA3 LINE L1 6101 6152 -3 203 229 0 21 chr15 90362258 90362306 -11018215 + MIR SINE MIR 47 93 -169 239 266 76 13 chr15 90362362 90362441 -11018080 - MIR SINE MIR -92 170 87 7223 63 3 0 chr15 90362463 90363528 -11016993 - L1PA5 LINE L1 0 6154 5076 208 205 0 0 chr15 90364944 90364983 -11015538 + MIR SINE MIR 47 85 -177 570 296 39 10 chr15 90365060 90365239 -11015282 + MER5A DNA MER1_type 4 188 -1 450 259 111 7 chr15 90365309 90365444 -11015077 - MIR SINE MIR -105 157 9 2028 197 71 82 chr15 90366594 90367142 -11013379 - MLT1F LTR MaLR 0 542 1 199 306 182 25 chr15 90367165 90367286 -11013235 + MIR3 SINE MIR 30 169 -39 221 375 52 15 chr15 90367307 90367443 -11013078 + MIR SINE MIR 7 147 -115 225 300 17 34 chr15 90367921 90368009 -11012512 - MIR SINE MIR -59 149 74 2140 127 68 0 chr15 90368613 90368935 -11011586 + MER2 DNA MER2_type 1 344 0 1520 224 73 0 chr15 90369129 90369446 -11011075 - MER58B DNA MER1_type 0 341 2 2308 108 0 9 chr15 90369990 90370305 -11010216 + AluSx SINE Alu 1 312 0 272 337 30 0 chr15 90371730 90371831 -11008690 + MIR SINE MIR 40 143 -65 296 347 0 0 chr15 90371959 90372054 -11008467 - MIR SINE MIR -110 152 58 271 299 55 55 chr15 90372371 90372535 -11007986 + MIR SINE MIR 97 260 -2 380 220 33 0 chr15 90373374 90373465 -11007056 - MIR SINE MIR -70 192 99 316 344 145 18 chr15 90373469 90373745 -11006776 + L2 LINE L2 2380 2690 -624 235 352 28 21 chr15 90373907 90374049 -11006472 + L2 LINE L2 2951 3093 -179 186 362 11 11 chr15 90374223 90374317 -11006204 - MIR SINE MIR -158 104 11 411 319 93 22 chr15 90374838 90375020 -11005501 + MIR3 SINE MIR 4 198 -10 284 244 139 9 chr15 90376811 90376926 -11003595 - L1ME4a LINE L1 -32 6089 5960 284 268 72 33 chr15 90376994 90377147 -11003374 - L1ME4a LINE L1 -2 6119 5961 23 33 0 0 chr15 90377149 90377179 -11003342 + AT_rich Low_complexity Low_complexity 1 30 0 234 383 0 0 chr15 90377352 90377467 -11003054 - L1ME4a LINE L1 -284 5886 5772 470 300 101 20 chr15 90377483 90377730 -11002791 - L1ME4a LINE L1 -456 5706 5440 426 267 57 23 chr15 90378319 90378495 -11002026 - L1ME4a LINE L1 -1997 5811 5630 23 33 0 0 chr15 90378521 90378551 -11001970 + AT_rich Low_complexity Low_complexity 1 30 0 322 331 36 7 chr15 90378586 90378725 -11001796 + MIR SINE MIR 93 235 -27 843 233 40 5 chr15 90478842 90479044 -10901477 - MER3 DNA MER1_type 0 209 1 2256 118 0 3 chr15 90479971 90480268 -10900253 + AluSg SINE Alu 1 296 -14 452 281 54 94 chr15 90480380 90480583 -10899938 + MIR SINE MIR 62 256 -6 489 303 117 11 chr15 90480654 90480842 -10899679 + MIR SINE MIR 49 256 -6 900 209 97 0 chr15 90481084 90481290 -10899231 - MIR SINE MIR -21 241 16 2512 135 35 4 chr15 90481556 90481977 -10898544 - MSTA LTR MaLR 0 428 1 423 281 13 12 chr15 90482388 90482549 -10897972 - MIR SINE MIR -4 258 12 267 278 42 0 chr15 90484003 90484075 -10896446 + MIR SINE MIR 55 129 -133 1463 160 84 11 chr15 90485104 90485397 -10895124 - AluSx SINE Alu 0 312 1 3237 155 28 13 chr15 90485616 90486230 -10894291 - L1MB2 LINE L1 -7 6164 5542 423 269 46 32 chr15 90486369 90486585 -10893936 + LTR33 LTR ERVL 301 519 -2 549 217 157 18 chr15 90486588 90486754 -10893767 + MIR SINE MIR 74 262 0 186 133 0 0 chr15 90487880 90487910 -10892611 + (TC)n Simple_repeat Simple_repeat 2 31 0 498 293 40 76 chr15 90488094 90488129 -10892392 - L2 LINE L2 -1 3312 3277 2320 102 7 0 chr15 90488129 90488424 -10892097 + AluSg SINE Alu 1 297 -13 498 293 40 76 chr15 90488424 90488586 -10891935 - L2 LINE L2 -36 3277 3122 227 307 310 15 chr15 90488585 90488979 -10891542 - L2 LINE L2 -337 2977 2468 * 222 378 56 0 chr15 90489292 90489382 -10891139 - MIR SINE MIR -92 116 22 341 331 50 12 chr15 90489525 90489685 -10890836 + L1ME4a LINE L1 5719 5884 -237 449 228 179 28 chr15 90492291 90492436 -10888085 + MIR SINE MIR 34 200 -62 1863 148 0 11 chr15 90492436 90492706 -10887815 + AluSx SINE Alu 23 289 -23 1546 180 0 34 chr15 90492801 90493095 -10887426 + AluJb SINE Alu 21 304 -8 3832 166 65 38 chr15 90494131 90494610 -10885911 - L1MB7 LINE L1 -16 6168 5703 2289 122 3 0 chr15 90494610 90494921 -10885600 - AluSx SINE Alu 0 312 1 3832 166 65 38 chr15 90494921 90495381 -10885140 - L1MB7 LINE L1 -481 5703 5199 213 282 77 13 chr15 90495472 90495550 -10884971 + L2 LINE L2 3190 3272 0 478 175 92 17 chr15 90496991 90497111 -10883410 - Charlie1 DNA MER1_type -1 2760 2632 * 499 237 172 33 chr15 90497081 90497296 -10883225 - Charlie1 DNA MER1_type -2510 251 7 773 315 22 4 chr15 90498144 90498376 -10882145 - MIR SINE MIR -25 237 2 2223 131 3 0 chr15 90498393 90498698 -10881823 - AluSx SINE Alu -6 306 1 203 272 36 113 chr15 90499785 90499854 -10880667 + L2 LINE L2 2575 2648 -666 1135 248 78 11 chr15 90499854 90500024 -10880497 - AluSx SINE Alu 0 302 104 380 12 50 38 chr15 90500024 90500104 -10880417 + (TA)n Simple_repeat Simple_repeat 1 81 0 1135 248 78 11 chr15 90500104 90500215 -10880306 - AluSx SINE Alu -198 104 2 203 272 36 113 chr15 90500215 90500340 -10880181 + L2 LINE L2 2648 2754 -560 6475 108 32 1 chr15 90500443 90501844 -10878677 - L1PA8A LINE L1 -404 5727 4288 244 239 26 94 chr15 90501977 90502094 -10878427 - MIR SINE MIR -55 207 99 234 312 104 16 chr15 90502801 90502926 -10877595 + MIR3 SINE MIR 19 154 -54 370 294 28 9 chr15 90503171 90503280 -10877241 + L2 LINE L2 3202 3312 -1 240 321 171 21 chr15 90503489 90503629 -10876892 - MIR3 SINE MIR 0 208 48 186 43 0 0 chr15 90503866 90503889 -10876632 + (A)n Simple_repeat Simple_repeat 1 23 0 459 294 107 21 chr15 90505144 90505331 -10875190 + MIR SINE MIR 10 212 -50 1214 300 195 13 chr15 90505516 90506679 -10873842 + L2 LINE L2 1911 3287 -26 188 241 86 0 chr15 90507041 90507099 -10873422 + MIR SINE MIR 117 179 -83 * 242 346 131 42 chr15 90507072 90507754 -10872767 + L2 LINE L2 2130 2871 -443 291 331 56 6 chr15 90508212 90508372 -10872149 - MIR SINE MIR -75 187 20 1427 119 0 0 chr15 90508372 90508582 -10871939 + L1MA3 LINE L1 6088 6297 -8 265 326 38 15 chr15 90509503 90509635 -10870886 + MIR3 SINE MIR 43 177 -31 2878 3 0 0 chr15 90510434 90510736 -10869785 + AluY SINE Alu 1 302 -9 290 214 117 0 chr15 90510924 90511027 -10869494 + L1ME4a LINE L1 6007 6121 0 450 0 0 0 chr15 90511611 90511661 -10868860 + (CA)n Simple_repeat Simple_repeat 2 51 0 286 229 0 29 chr15 90512065 90512135 -10868386 + L2 LINE L2 3242 3309 -4 548 274 93 33 chr15 90512741 90512956 -10867565 - L3 LINE CR1 -786 791 564 505 262 60 47 chr15 90513015 90513248 -10867273 + MIR SINE MIR 14 249 -13 2339 105 0 3 chr15 90513464 90513759 -10866762 - AluSx SINE Alu -18 294 1 270 283 131 0 chr15 90514926 90515025 -10865496 + MIR SINE MIR 117 228 -34 330 153 0 0 chr15 90515070 90515129 -10865392 + (CAG)n Simple_repeat Simple_repeat 1 59 0 21 57 0 0 chr15 90515365 90515400 -10865121 + AT_rich Low_complexity Low_complexity 1 35 0 765 185 0 0 chr15 90515504 90515682 -10864839 + (TGGA)n Simple_repeat Simple_repeat 2 179 0 614 272 195 4 chr15 90515746 90516003 -10864518 + L2 LINE L2 2996 3301 -12 1996 128 3 7 chr15 90516794 90517098 -10863423 + AluSx SINE Alu 1 303 -9 281 276 102 10 chr15 90517441 90517539 -10862982 + MIR SINE MIR 45 151 -57 207 320 40 48 chr15 90517693 90517818 -10862703 + L2 LINE L2 2948 3071 -201 265 313 161 0 chr15 90518817 90518929 -10861592 + L2 LINE L2 3184 3313 0 181 249 121 121 chr15 90519165 90519330 -10861191 - L2 LINE L2 -87 3185 3021 382 274 125 42 chr15 90519447 90519615 -10860906 - MIR SINE MIR -1 261 80 219 69 0 0 chr15 90520267 90520296 -10860225 + (TGGA)n Simple_repeat Simple_repeat 4 32 0 185 91 0 30 chr15 90520324 90520357 -10860164 + (TG)n Simple_repeat Simple_repeat 2 33 0 548 280 67 62 chr15 90521138 90521363 -10859158 - MIR SINE MIR -6 256 31 277 304 39 10 chr15 90522297 90522399 -10858122 - MIR3 SINE MIR -102 106 2 576 214 103 0 chr15 90524111 90524228 -10856293 + FLAM_C SINE Alu 2 130 -13 737 11 0 11 chr15 90524279 90524370 -10856151 + (TCTA)n Simple_repeat Simple_repeat 4 93 0 190 268 0 36 chr15 90527594 90527650 -10852871 - MER5A DNA MER1_type -10 179 126 395 306 68 46 chr15 90527852 90528071 -10852450 - MIR SINE MIR -24 238 15 293 316 38 15 chr15 90528079 90528212 -10852309 - MER5A DNA MER1_type -3 186 51 269 306 10 41 chr15 90529007 90529105 -10851416 - L2 LINE L2 -7 3306 3212 280 285 85 46 chr15 90529245 90529375 -10851146 - MIR SINE MIR -70 192 58 621 48 0 0 chr15 90530357 90530441 -10850080 + AluY SINE Alu 228 311 -1 498 164 46 37 chr15 90531704 90531846 -10848675 - L1MB5 LINE L1 -35 6145 6002 22 0 0 0 chr15 90531851 90531873 -10848648 + AT_rich Low_complexity Low_complexity 1 22 0 211 330 10 0 chr15 90532014 90532114 -10848407 + (TA)n Simple_repeat Simple_repeat 2 102 0 357 280 153 24 chr15 90532135 90532404 -10848117 - L1ME3 LINE L1 -325 5837 5649 962 125 12 12 chr15 90532464 90532624 -10847897 - FRAM SINE Alu -18 158 1 429 289 54 32 chr15 90532625 90532902 -10847619 - L1ME3 LINE L1 -2271 5537 5255 26 0 0 0 chr15 90532949 90532975 -10847546 + AT_rich Low_complexity Low_complexity 1 26 0 2423 144 32 2 chr15 90532975 90533385 -10847136 - L1PA16 LINE L1 -9 6157 5736 1882 134 22 19 chr15 90533497 90533817 -10846704 + THE1C LTR MaLR 55 375 0 347 280 60 39 chr15 90535095 90535310 -10845211 - MIR SINE MIR -48 214 1 742 165 0 24 chr15 90536286 90536413 -10844108 - FLAM_C SINE Alu -7 136 13 214 283 76 22 chr15 90536637 90536729 -10843792 - MIR3 SINE MIR -6 202 106 406 330 52 52 chr15 90537234 90537525 -10842996 - L2 LINE L2 0 3313 3023 396 93 0 80 chr15 90537551 90537626 -10842895 - L1MA6 LINE L1 0 6300 6232 836 146 7 0 chr15 90537627 90537764 -10842757 + L1MA6 LINE L1 6082 6219 -81 799 295 205 14 chr15 90537770 90538210 -10842311 - L2 LINE L2 -280 3033 2510 476 259 9 0 chr15 90538617 90538725 -10841796 + MER103 DNA DNA 12 120 -46 438 339 42 13 chr15 90539564 90539871 -10840650 + ERVL LTR ERVL 3909 4256 -1261 2013 104 0 0 chr15 90539916 90540224 -10840297 - AluSx SINE Alu 0 312 5 680 247 186 30 chr15 90540265 90540637 -10839884 + MLT1G LTR MaLR 161 590 0 2380 50 0 10 chr15 90541488 90541787 -10838734 + AluY SINE Alu 1 296 -15 2008 212 12 28 chr15 90541787 90542363 -10838158 + L1 LINE L1 3018 3584 -2562 402 299 8 0 chr15 90542478 90542595 -10837926 + MIR SINE MIR 106 223 -39 1429 180 8 30 chr15 90543750 90544017 -10836504 - MLT1A1 LTR MaLR -104 261 1 240 205 73 48 chr15 90544723 90544816 -10835705 + MIR SINE MIR 53 148 -60 241 304 65 11 chr15 90544852 90544944 -10835577 - L2 LINE L2 -8 3264 3168 906 245 16 0 chr15 90545021 90545209 -10835312 + MER20 DNA MER1_type 29 219 0 502 263 66 74 chr15 90545575 90545720 -10834801 - L3 LINE CR1 -118 1459 1315 1135 185 75 29 chr15 90545720 90546028 -10834493 + MER33 DNA MER1_type 1 322 -2 502 263 66 74 chr15 90546028 90546125 -10834396 - L3 LINE CR1 -262 1315 1219 526 257 29 29 chr15 90546128 90546264 -10834257 - L2 LINE L2 -3 3269 3134 3500 170 120 71 chr15 90546320 90546711 -10833810 - L1MC3 LINE L1 -1 7784 7414 216 86 0 0 chr15 90546711 90546746 -10833775 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3500 170 120 71 chr15 90546746 90546937 -10833584 - L1MC3 LINE L1 -371 7414 7234 232 203 31 31 chr15 90546937 90547001 -10833520 - MLT1F1 LTR MaLR -456 111 48 3500 170 120 71 chr15 90547001 90547289 -10833232 - L1MC3 LINE L1 -551 7234 6804 279 251 98 68 chr15 90547776 90547939 -10832582 + MIR SINE MIR 87 254 -8 1897 123 0 4 chr15 90548006 90548283 -10832238 + AluSx SINE Alu 1 276 -36 432 223 135 26 chr15 90548316 90548509 -10832012 + L1MC5 LINE L1 7735 7948 -13 466 87 0 0 chr15 90548517 90548586 -10831935 + L1MB3 LINE L1 6111 6179 -4 422 327 159 11 chr15 90549290 90549859 -10830662 + L2 LINE L2 2473 3140 -173 415 242 64 25 chr15 90549948 90550105 -10830416 - L2 LINE L2 -217 3055 2893 281 171 43 71 chr15 90551660 90551730 -10828791 - L2 LINE L2 -4 3309 3242 324 0 0 0 chr15 90552134 90552170 -10828351 + (TG)n Simple_repeat Simple_repeat 2 37 0 299 204 122 48 chr15 90552754 90552901 -10827620 - L1ME4a LINE L1 0 6121 5964 254 234 51 25 chr15 90553837 90553969 -10826552 - MIR SINE MIR -31 177 43 211 316 63 13 chr15 90554368 90554447 -10826074 - MIR SINE MIR -160 102 20 343 299 80 48 chr15 90555517 90555704 -10824817 - MIR SINE MIR -48 214 22 5234 186 27 18 chr15 90556751 90557031 -10823490 - L1P4 LINE L1 -564 5602 5326 2008 134 0 0 chr15 90557031 90557329 -10823192 - AluSx SINE Alu -14 298 1 5234 186 27 18 chr15 90557329 90558511 -10822010 - L1P4 LINE L1 -840 5326 4125 520 341 106 63 chr15 90558597 90559699 -10820822 - L1M4 LINE L1 -1091 5055 3906 180 0 0 0 chr15 90559721 90559741 -10820780 + (T)n Simple_repeat Simple_repeat 1 20 0 438 236 91 30 chr15 90560094 90560265 -10820256 - MIR SINE MIR -65 197 15 277 257 155 14 chr15 90560714 90560862 -10819659 - MIR SINE MIR -51 211 43 198 286 41 0 chr15 90560945 90560994 -10819527 + MIR SINE MIR 1 51 -211 294 255 38 75 chr15 90561004 90561110 -10819411 + MIR SINE MIR 20 121 -141 21 95 0 0 chr15 90561111 90561174 -10819347 + AT_rich Low_complexity Low_complexity 1 63 0 618 231 15 0 chr15 90561174 90561304 -10819217 + MIR SINE MIR 110 241 -21 2556 215 42 8 chr15 90561305 90561827 -10818694 - MLT1F LTR MaLR 0 542 3 840 193 91 28 chr15 90563704 90563958 -10816563 + MER33 DNA MER1_type 55 324 0 541 287 3 94 chr15 90563975 90564103 -10816418 + Charlie8 DNA MER1_type 1 139 -2278 1613 166 35 3 chr15 90564103 90564387 -10816134 - AluJo SINE Alu -19 293 1 541 287 3 94 chr15 90564387 90564565 -10815956 + Charlie8 DNA MER1_type 139 279 -2138 224 297 35 35 chr15 90564932 90565077 -10815444 - L2 LINE L2 -1157 2157 2013 950 203 34 0 chr15 90566709 90566886 -10813635 + MER5A DNA MER1_type 7 189 0 51 51 0 0 chr15 90566994 90567073 -10813448 + AT_rich Low_complexity Low_complexity 1 79 0 539 104 0 0 chr15 90567132 90567209 -10813312 - AluJ SINE Alu -28 284 208 831 160 42 0 chr15 90567210 90567354 -10813167 - AluJ SINE Alu -162 150 1 2119 100 0 7 chr15 90567717 90568017 -10812504 - AluSx SINE Alu -14 298 1 512 243 29 66 chr15 90568036 90568172 -10812349 + L2 LINE L2 3183 3313 0 539 179 77 26 chr15 90568558 90568714 -10811807 - Zaphod DNA AcHobo -30 4001 3838 404 219 12 0 chr15 90568698 90568780 -10811741 - Zaphod DNA AcHobo -1145 2886 2804 * 597 248 78 39 chr15 90568807 90569065 -10811456 + MER33 DNA MER1_type 54 321 -3 307 317 70 0 chr15 90569428 90569614 -10810907 - MER115 DNA AcHobo -157 536 338 1931 224 87 59 chr15 90569833 90570526 -10809995 + L1ME3A LINE L1 5454 6165 -5 844 227 123 40 chr15 90570534 90570834 -10809687 + Charlie7 DNA MER1_type 399 723 -1889 287 229 73 0 chr15 90570824 90570933 -10809588 + Charlie7 DNA MER1_type 2415 2531 -81 * 242 318 34 45 chr15 90572234 90572322 -10808199 + MIR SINE MIR 174 260 -2 233 296 105 40 chr15 90573950 90574197 -10806324 - L2 LINE L2 -340 2974 2712 640 287 57 24 chr15 90575649 90575858 -10804663 - MIR SINE MIR 0 262 47 277 271 80 96 chr15 90575963 90575999 -10804522 - MIR SINE MIR -27 235 200 1955 142 71 6 chr15 90575999 90576338 -10804183 + MER46B DNA MER2_type 1 236 0 277 271 80 96 chr15 90576338 90576489 -10804032 - MIR SINE MIR -62 200 51 342 90 45 75 chr15 90576573 90576640 -10803881 - MER58 DNA MER1_type 0 2420 2356 250 139 0 0 chr15 90576619 90576655 -10803866 - MER58 DNA MER1_type -188 36 1 * 313 301 32 0 chr15 90577488 90577581 -10802940 - L2 LINE L2 -18 3295 3200 1470 137 42 11 chr15 90577726 90577988 -10802533 - L1PB2 LINE L1 -8 6143 5874 238 216 0 20 chr15 90578368 90578419 -10802102 - L1MB5 LINE L1 -61 6113 6064 3705 74 0 0 chr15 90578419 90578880 -10801641 + MER11C LTR ERVK 611 1071 0 378 197 118 0 chr15 90578992 90579068 -10801453 + MER33 DNA MER1_type 1 85 -239 655 177 73 0 chr15 90579095 90579259 -10801262 - Charlie5 DNA MER1_type -43 2569 2394 762 223 36 23 chr15 90580354 90580574 -10799947 - MIR SINE MIR -19 243 21 357 24 0 0 chr15 90581180 90581222 -10799299 + (TAA)n Simple_repeat Simple_repeat 2 43 0 966 185 13 48 chr15 90581663 90581890 -10798631 - MER20 DNA MER1_type 0 219 1 447 294 92 7 chr15 90582063 90582216 -10798305 + MIR SINE MIR 51 216 -46 2085 100 24 0 chr15 90582352 90582642 -10797879 - AluSx SINE Alu -15 297 1 1297 200 121 18 chr15 90582863 90583193 -10797328 - MLT1A1 LTR MaLR -1 364 1 1111 102 208 15 chr15 90583402 90583599 -10796922 + MER46A DNA MER2_type 2 236 0 * 3364 177 17 42 chr15 90583599 90584070 -10796451 + MER82 DNA MER2_type 24 476 -177 2372 71 0 0 chr15 90584070 90584367 -10796154 - AluY SINE Alu -14 297 1 3364 177 17 42 chr15 90584367 90584540 -10795981 + MER82 DNA MER2_type 476 652 -1 240 86 0 0 chr15 90584569 90584604 -10795917 + (CA)n Simple_repeat Simple_repeat 1 35 0 2041 125 0 3 chr15 90585874 90586170 -10794351 + AluSx SINE Alu 1 295 -17 461 281 61 96 chr15 90586287 90586650 -10793871 - L2 LINE L2 0 3272 2923 314 244 81 16 chr15 90588270 90588393 -10792128 - HsTC2 DNA Tc2 -158 1740 1610 297 0 0 0 chr15 90589726 90589759 -10790762 + (CA)n Simple_repeat Simple_repeat 1 33 0 335 279 31 31 chr15 90590553 90590682 -10789839 + MIR SINE MIR 19 147 -61 239 240 115 0 chr15 90590845 90590941 -10789580 + MLT1J1 LTR MaLR 147 253 -193 1906 81 240 196 chr15 90591361 90591916 -10788605 + LTR12 LTR ERV1 1 579 -135 4318 83 83 22 chr15 90592107 90592736 -10787785 + PABL_B LTR ERV1 1 667 0 2330 86 3 0 chr15 90592979 90593283 -10787238 - AluSp SINE Alu -8 305 1 316 329 62 6 chr15 90593420 90593581 -10786940 + MIR SINE MIR 32 201 -61 * 690 291 123 11 chr15 90593571 90593883 -10786638 - L2 LINE L2 0 3313 2922 2243 82 0 13 chr15 90594335 90594639 -10785882 - L1P5 LINE L1 -429 5722 5423 252 170 19 0 chr15 90594644 90594697 -10785824 + L1MB7 LINE L1 6131 6184 0 407 281 52 20 chr15 90594772 90594925 -10785596 - MIR SINE MIR -79 183 26 646 187 39 39 chr15 90595006 90595161 -10785360 - Tigger2 DNA MER2_type -10 2708 2554 * 1321 130 10 5 chr15 90595158 90595365 -10785156 - Tigger2 DNA MER2_type -2510 208 1 1437 282 49 36 chr15 90595389 90596038 -10784483 - L2 LINE L2 -1 3312 2659 1227 189 71 21 chr15 90596062 90596174 -10784347 + AluSx SINE Alu 1 106 -206 562 8 60 45 chr15 90596174 90596307 -10784214 + (TA)n Simple_repeat Simple_repeat 2 136 0 1227 189 71 21 chr15 90596307 90596475 -10784046 + AluSx SINE Alu 106 295 -17 1575 107 18 5 chr15 90596705 90596929 -10783592 - THE1C LTR MaLR -148 227 1 408 315 115 0 chr15 90597589 90597754 -10782767 + MIR SINE MIR 79 262 0 604 235 74 0 chr15 90598331 90598493 -10782028 + MIR SINE MIR 44 217 -45 1612 194 58 39 chr15 90598976 90599357 -10781164 - MLT1B LTR MaLR 0 390 3 845 232 145 56 chr15 90600576 90600969 -10779552 - MLT1C LTR MaLR -34 433 6 195 249 185 43 chr15 90601127 90601290 -10779231 + MIR SINE MIR 5 192 -63 1032 194 33 14 chr15 90601682 90601893 -10778628 - MER20 DNA MER1_type -4 215 1 2075 110 0 7 chr15 90601915 90602215 -10778306 + AluSq SINE Alu 1 298 -15 522 340 203 33 chr15 90603011 90604130 -10776391 - L3 LINE CR1 -34 1543 235 1024 102 7 7 chr15 90604387 90604534 -10775987 - AluSq/x SINE Alu -165 147 1 529 122 10 20 chr15 90604546 90604644 -10775877 - Tigger3(Golem) DNA MER2_type -648 2381 2285 465 243 0 36 chr15 90604644 90604755 -10775766 - Tigger3(Golem) DNA MER2_type -2921 108 2 589 264 25 13 chr15 90607096 90607255 -10773266 + MIR SINE MIR 37 197 -65 2062 116 27 0 chr15 90607312 90607606 -10772915 + AluSg SINE Alu 1 302 -8 1628 210 3 9 chr15 90607975 90608323 -10772198 - L1 LINE L1 -793 5353 5008 * 2924 132 55 0 chr15 90608322 90608799 -10771722 + L1MA4 LINE L1 5706 6208 -92 243 0 0 0 chr15 90608805 90608832 -10771689 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 780 136 0 0 chr15 90608836 90608946 -10771575 - AluSg/x SINE Alu -31 279 170 525 277 78 12 chr15 90609330 90609496 -10771025 + MIR SINE MIR 19 195 -67 1692 61 5 0 chr15 90609565 90609777 -10770744 - AluSq SINE Alu -64 249 37 725 194 82 39 chr15 90609777 90609983 -10770538 + MER20 DNA MER1_type 1 215 -4 955 86 9 18 chr15 90610781 90611451 -10769070 + (TA)n Simple_repeat Simple_repeat 1 664 0 369 215 19 84 chr15 90611466 90611573 -10768948 + MER5A DNA MER1_type 1 100 -89 1958 101 0 49 chr15 90611890 90612198 -10768323 - AluSx SINE Alu -19 293 1 187 248 95 48 chr15 90612583 90612688 -10767833 + MIR SINE MIR 141 250 -12 530 288 128 20 chr15 90612768 90613126 -10767395 + L1ME4a LINE L1 5708 6104 -17 1895 129 0 0 chr15 90613135 90613413 -10767108 - AluY SINE Alu -13 298 21 264 294 118 8 chr15 90614592 90614711 -10765810 + MIR SINE MIR 131 262 0 245 317 19 29 chr15 90615683 90615787 -10764734 + L2 LINE L2 2934 3036 -236 307 361 105 21 chr15 90616489 90616727 -10763794 - L3 LINE CR1 -1072 505 248 293 260 39 19 chr15 90618732 90618836 -10761685 - MIR SINE MIR -111 151 46 195 69 0 0 chr15 90618905 90618934 -10761587 + (TG)n Simple_repeat Simple_repeat 1 29 0 1343 218 110 24 chr15 90619402 90619820 -10760701 - MLT1C LTR MaLR -8 459 6 1920 139 35 0 chr15 90620561 90620849 -10759672 - Tigger3(Golem) DNA MER2_type -1 3028 2731 185 291 52 82 chr15 90621370 90621504 -10759017 - L2 LINE L2 -214 3058 2929 1968 111 77 9 chr15 90621793 90621821 -10758700 - L1MA3 LINE L1 0 6305 6280 429 20 0 0 chr15 90621821 90621871 -10758650 + (TG)n Simple_repeat Simple_repeat 1 50 0 1968 111 77 9 chr15 90621871 90622166 -10758355 - L1MA3 LINE L1 -25 6280 5960 2010 113 12 64 chr15 90622224 90622550 -10757971 - AluSx SINE Alu -3 309 1 596 254 11 28 chr15 90622619 90622796 -10757725 + MER5B DNA MER1_type 5 178 0 374 293 45 8 chr15 90623743 90623876 -10756645 + MIR SINE MIR 47 184 -78 261 268 84 37 chr15 90624527 90624649 -10755872 + L1ME4a LINE L1 5922 6058 -63 749 245 78 12 chr15 90624649 90624894 -10755627 - MIR SINE MIR 0 262 2 261 268 84 37 chr15 90624894 90624961 -10755560 + L1ME4a LINE L1 6058 6120 -1 439 267 63 16 chr15 90625188 90625379 -10755142 - MIR SINE MIR 0 262 63 272 324 99 14 chr15 90625865 90626087 -10754434 - MIR SINE MIR -6 256 16 1143 292 69 32 chr15 90626648 90627386 -10753135 - L1ME3A LINE L1 -143 6011 5257 230 29 0 0 chr15 90627734 90627768 -10752753 + L1PA3 LINE L1 6122 6155 0 353 231 34 0 chr15 90627887 90628004 -10752517 - L1ME3A LINE L1 -1383 4763 4643 25 51 0 0 chr15 90628004 90628043 -10752478 + AT_rich Low_complexity Low_complexity 1 39 0 842 163 0 27 chr15 90628135 90628282 -10752239 - FLAM_C SINE Alu 0 143 1 2626 143 36 11 chr15 90628814 90629260 -10751261 + L1PB3 LINE L1 5695 6151 -3 301 148 98 0 chr15 90629282 90629343 -10751178 + L1MB8 LINE L1 6102 6168 -10 513 150 50 0 chr15 90629352 90629452 -10751069 - L1MA5A LINE L1 -451 5846 5742 * 813 118 236 11 chr15 90629433 90629611 -10750910 + L1MA5A LINE L1 6080 6297 0 2017 136 0 0 chr15 90629621 90629907 -10750614 + AluSg SINE Alu 1 286 -24 24 0 0 0 chr15 90631144 90631168 -10749353 + AT_rich Low_complexity Low_complexity 1 24 0 588 29 0 0 chr15 90631196 90631266 -10749255 + (TTCC)n Simple_repeat Simple_repeat 1 70 0 260 326 116 0 chr15 90631266 90631361 -10749160 - L2 LINE L2 -13 3259 3154 2022 167 3 9 chr15 90631835 90632165 -10748356 + MLT1A1 LTR MaLR 34 361 -4 2843 28 0 0 chr15 90632673 90632991 -10747530 + AluYb8 SINE Alu 1 318 0 4846 113 77 7 chr15 90633015 90633785 -10746736 + L1MA2 LINE L1 5477 6300 -4 424 235 127 45 chr15 90633851 90634072 -10746449 - L1MEd LINE L1 -5097 1022 784 213 39 0 0 chr15 90634363 90634389 -10746132 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 237 65 0 0 chr15 90634539 90634570 -10745951 + (TG)n Simple_repeat Simple_repeat 1 31 0 502 198 135 0 chr15 90634873 90634984 -10745537 + MER63 DNA MER1_type 1 752 -310 300 235 25 25 chr15 90634987 90635068 -10745453 + MER63 DNA MER1_type 982 1062 0 503 278 117 73 chr15 90636460 90636938 -10743583 - MLT1J LTR MaLR -2 509 11 185 314 69 29 chr15 90637330 90637432 -10743089 + L2 LINE L2 3159 3264 -49 1614 117 31 0 chr15 90637533 90637789 -10742732 - L1 LINE L1 -1757 4389 4126 345 24 0 0 chr15 90637903 90637945 -10742576 + (CA)n Simple_repeat Simple_repeat 2 43 0 238 333 0 0 chr15 90637945 90638020 -10742501 - L1MC4 LINE L1 -141 7901 7827 335 263 83 32 chr15 90638112 90638330 -10742191 + L1M4c LINE L1 1295 1671 -4892 2518 81 0 0 chr15 90638363 90638671 -10741850 - AluY SINE Alu -3 308 1 331 283 140 22 chr15 90638827 90639099 -10741422 + L1MC5 LINE L1 7480 7783 -178 4480 133 26 0 chr15 90639186 90639914 -10740607 - L1P LINE L1 -2546 3600 2854 6031 87 15 15 chr15 90639914 90640811 -10739710 + L1PA8A LINE L1 4466 5364 -767 2556 50 3 3 chr15 90640811 90641114 -10739407 + AluY SINE Alu 1 303 -8 6031 87 15 15 chr15 90641114 90641867 -10738654 + L1PA8A LINE L1 5363 6115 -16 335 248 58 8 chr15 90642487 90642608 -10737913 + L1M4c LINE L1 2503 2629 -3753 1695 185 34 69 chr15 90642710 90643069 -10737452 - L1M4 LINE L1 -743 5403 5066 1918 87 8 12 chr15 90643069 90643323 -10737198 + AluSq SINE Alu 1 253 -60 1695 185 34 69 chr15 90643323 90643470 -10737051 - L1M4 LINE L1 -1080 5066 4915 422 250 0 0 chr15 90643532 90643644 -10736877 + L1M4c LINE L1 2885 2996 -3386 1777 139 0 0 chr15 90643658 90643909 -10736612 - AluSx SINE Alu -20 292 42 248 62 0 0 chr15 90644028 90644060 -10736461 - AluSx SINE Alu -269 32 1 943 216 118 6 chr15 90644061 90644417 -10736104 + L1M4c LINE L1 2987 3382 -3000 1804 141 62 33 chr15 90644428 90644571 -10735950 + L1MB3 LINE L1 5679 5816 -367 1998 146 7 0 chr15 90644571 90644873 -10735648 + AluSx SINE Alu 1 304 -8 1804 141 62 33 chr15 90644873 90645101 -10735420 + L1MB3 LINE L1 5816 6065 -118 301 268 76 19 chr15 90645466 90645623 -10734898 + MER4B LTR ERV1 441 606 -4 2305 284 86 19 chr15 90645658 90646348 -10734173 - L1MEc LINE L1 -4564 1651 1008 2016 112 0 7 chr15 90646348 90646663 -10733858 - AluSx SINE Alu 0 313 1 2305 284 86 19 chr15 90646663 90647503 -10733018 - L1MEc LINE L1 -5207 1008 55 571 253 120 12 chr15 90647841 90648082 -10732439 + L1ME4a LINE L1 5681 5947 -223 404 135 14 0 chr15 90651300 90651374 -10729147 + CT-rich Low_complexity Low_complexity 1 75 0 187 125 21 104 chr15 90651610 90651658 -10728863 - MIR3 SINE MIR -39 169 126 423 234 213 7 chr15 90651743 90651884 -10728637 - MER5B DNA MER1_type -1 177 8 464 304 105 5 chr15 90652272 90652463 -10728058 - Charlie8 DNA MER1_type -2141 276 67 336 196 11 54 chr15 90653531 90653623 -10726898 + L1ME4a LINE L1 5975 6062 -59 450 286 92 37 chr15 90653876 90654170 -10726351 + L1ME4a LINE L1 5602 5911 -210 286 308 17 8 chr15 90654179 90654299 -10726222 + MIR SINE MIR 140 260 -2 243 0 0 0 chr15 90655275 90655302 -10725219 + (T)n Simple_repeat Simple_repeat 1 27 0 2166 136 3 0 chr15 90655302 90655625 -10724896 - LTR17 LTR ERV1 -454 326 3 2049 116 3 3 chr15 90655627 90655919 -10724602 - HERV17 LTR ERV1 0 8626 8335 258 103 0 0 chr15 90655909 90655948 -10724573 - HERV17 LTR ERV1 -1078 7548 7510 * 16396 48 3 1 chr15 90655941 90657864 -10722657 - HERV17 LTR ERV1 -2607 6019 4093 2120 121 50 16 chr15 90657835 90658355 -10722166 - HERV17 LTR ERV1 -7589 1037 481 * 21 36 0 0 chr15 90658491 90658519 -10722002 + AT_rich Low_complexity Low_complexity 1 28 0 4091 65 0 0 chr15 90658567 90659058 -10721463 - HERV17 LTR ERV1 -8134 492 2 4217 63 4 2 chr15 90659058 90659582 -10720939 - LTR17 LTR ERV1 0 780 256 351 228 197 8 chr15 90660368 90660495 -10720026 + MIR3 SINE MIR 52 202 -6 2383 83 0 0 chr15 90660807 90661097 -10719424 - AluY SINE Alu -21 290 1 234 254 0 17 chr15 90661238 90661297 -10719224 + MLT1K LTR MaLR 188 245 -343 280 270 32 63 chr15 90661411 90661537 -10718984 + MLT1K LTR MaLR 454 575 -13 695 139 0 14 chr15 90661542 90661686 -10718835 + (TTCC)n Simple_repeat Simple_repeat 3 144 0 234 159 11 57 chr15 90661809 90661897 -10718624 + (CGGG)n Simple_repeat Simple_repeat 2 85 0 25 65 0 0 chr15 90661900 90661946 -10718575 + GC_rich Low_complexity Low_complexity 1 46 0 64 81 0 0 chr15 90662033 90662181 -10718340 + GC_rich Low_complexity Low_complexity 1 148 0 45 93 0 0 chr15 90662491 90662620 -10717901 + GC_rich Low_complexity Low_complexity 1 129 0 186 43 0 0 chr15 90662765 90662788 -10717733 + (TCCC)n Simple_repeat Simple_repeat 2 24 0 2203 105 0 3 chr15 90662787 90663244 -10717277 - AluSx SINE Alu 0 456 1 1636 248 57 21 chr15 90663573 90664097 -10716424 + MER74B LTR ERVL 78 620 -2 185 383 31 23 chr15 90664174 90664302 -10716219 - MIR SINE MIR -122 140 12 232 344 10 42 chr15 90664326 90664422 -10716099 - L2 LINE L2 -47 3225 3133 1217 162 33 48 chr15 90664594 90664864 -10715657 - MER33 DNA MER1_type -70 254 1 243 326 15 0 chr15 90664919 90665054 -10715467 - L1MCa LINE L1 -4858 1568 1432 425 282 87 31 chr15 90665075 90665398 -10715123 - L1MCa LINE L1 -4864 1552 1212 238 248 148 10 chr15 90666537 90666638 -10713883 + L2 LINE L2 3158 3272 0 189 263 120 38 chr15 90667411 90667544 -10712977 - L2 LINE L2 -20 3293 3150 2582 265 83 46 chr15 90669907 90671252 -10709269 - L2 LINE L2 -1 3312 1919 1540 189 64 33 chr15 90671828 90672188 -10708333 - MLT1A2 LTR MaLR -3 371 1 2349 94 3 7 chr15 90672309 90672618 -10707903 + AluSg SINE Alu 1 308 -2 1334 178 68 29 chr15 90672726 90673007 -10707514 + MLT1E1 LTR MaLR 1 292 -362 577 141 20 154 chr15 90673040 90673134 -10707387 + MLT1E1 LTR MaLR 526 594 -60 1805 165 0 38 chr15 90673134 90673450 -10707071 - AluJb SINE Alu -8 304 1 577 141 20 154 chr15 90673450 90673504 -10707017 + MLT1E1 LTR MaLR 594 654 0 3878 60 2 4 chr15 90673751 90674237 -10706284 + L1PA7 LINE L1 5670 6154 0 489 250 47 6 chr15 90674278 90674450 -10706071 + L1ME4a LINE L1 2128 2306 -3840 * 742 266 86 13 chr15 90674443 90674744 -10705777 + L1ME4a LINE L1 3881 4203 -1943 27 0 0 0 chr15 90674809 90674836 -10705685 + AT_rich Low_complexity Low_complexity 1 27 0 500 239 41 85 chr15 90674901 90675154 -10705367 + L1ME4a LINE L1 5657 5895 -226 2192 105 14 3 chr15 90675154 90675448 -10705073 + AluSx SINE Alu 1 297 -15 500 239 41 85 chr15 90675448 90675512 -10705009 + L1ME4a LINE L1 5895 5960 -161 1972 94 11 8 chr15 90675870 90676135 -10704386 - AluSc SINE Alu -6 303 38 1106 209 19 0 chr15 90676632 90676847 -10703674 + MER20 DNA MER1_type 1 219 0 833 246 71 14 chr15 90676966 90677247 -10703274 + L1MEc LINE L1 45 341 -6055 1560 266 14 2 chr15 90677269 90677693 -10702828 + L1MEc LINE L1 396 824 -5572 958 170 18 0 chr15 90677695 90677866 -10702655 + AluJb SINE Alu 138 311 -1 571 232 67 16 chr15 90677882 90678076 -10702445 + L1MEc LINE L1 811 1014 -5382 233 345 81 0 chr15 90678122 90678209 -10702312 - L2 LINE L2 -45 3227 3134 356 253 40 53 chr15 90678558 90678708 -10701813 + MLT1H LTR MaLR 26 173 -376 237 372 11 11 chr15 90679018 90679112 -10701409 - MIR SINE MIR -152 110 17 239 280 64 38 chr15 90679124 90679281 -10701240 + L1ME LINE L1 5622 5782 -339 261 320 24 16 chr15 90680213 90680338 -10700183 + MIR SINE MIR 32 157 -105 11603 89 15 10 chr15 90683641 90685208 -10695313 - HERV9 LTR ERV1 -2068 6331 4756 * 13760 122 10 10 chr15 90685207 90688214 -10692307 - HERV9 LTR ERV1 -5427 2972 53 2917 127 31 11 chr15 90688190 90688671 -10691850 - LTR12 LTR ERV1 -231 483 57 * 365 48 0 0 chr15 90688672 90688714 -10691807 - LTR12 LTR ERV1 -620 94 53 270 231 0 0 chr15 90688714 90688766 -10691755 - LTR30 LTR ERV1 -670 52 1 790 294 7 7 chr15 90688766 90689052 -10691469 - L1M4 LINE L1 -2460 3686 3401 2683 228 107 7 chr15 90689062 90689941 -10690580 + L1MEc LINE L1 2338 3304 -2911 5585 190 30 22 chr15 90689945 90691070 -10689451 + L1PA16 LINE L1 12 1145 -6420 4968 191 47 7 chr15 90691080 90691725 -10688796 + L1PA16 LINE L1 5561 6179 -1406 2062 128 48 34 chr15 90691725 90692083 -10688438 - THE1B LTR MaLR 0 364 2 4968 191 47 7 chr15 90692083 90693289 -10687232 + L1PA16 LINE L1 6179 7480 -105 400 117 0 0 chr15 90693290 90693350 -10687171 + L1PA16 LINE L1 7517 7576 -9 2264 111 3 3 chr15 90693353 90693660 -10686861 + AluSx SINE Alu 1 307 -5 1885 175 123 3 chr15 90693668 90694051 -10686470 - MSTB1 LTR MaLR 0 432 4 7517 198 31 22 chr15 90694051 90695544 -10684977 - MSTB-int LTR MaLR 0 1651 146 4150 144 11 63 chr15 90695552 90695775 -10684746 + MER72 LTR ERV1 1 234 -488 2913 72 60 0 chr15 90695775 90696178 -10684343 - L1PA8 LINE L1 -10 6162 5736 4150 144 11 63 chr15 90696178 90696716 -10683805 + MER72 LTR ERV1 234 722 0 860 127 0 7 chr15 90696716 90696858 -10683663 - MSTB-int LTR MaLR -1510 141 1 1981 209 24 9 chr15 90696858 90697278 -10683243 - MSTB LTR MaLR 0 426 1 299 183 12 37 chr15 90698435 90698517 -10682004 + Charlie7 DNA MER1_type 32 111 -2501 23 54 0 0 chr15 90698581 90698618 -10681903 + AT_rich Low_complexity Low_complexity 1 37 0 1892 160 72 20 chr15 90698636 90699032 -10681489 - L1MA10 LINE L1 -1 6333 5757 279 289 23 70 chr15 90699875 90700003 -10680518 - MIR3 SINE MIR -86 122 1 268 293 87 65 chr15 90700775 90700793 -10679728 - MLT1L LTR MaLR -15 600 584 2099 186 11 6 chr15 90700793 90701153 -10679368 - MLT1A1 LTR MaLR -3 362 1 268 293 87 65 chr15 90701153 90701363 -10679158 - MLT1L LTR MaLR -31 584 367 819 249 121 14 chr15 90701753 90702167 -10678354 + MER113 DNA MER1_type? 11 468 -53 1234 150 33 33 chr15 90702388 90702628 -10677893 - Tigger2a DNA MER2_type -192 242 3 201 281 0 0 chr15 90703016 90703073 -10677448 + (CAGGG)n Simple_repeat Simple_repeat 2 58 0 310 235 127 86 chr15 90703405 90703673 -10676848 + MLT1L LTR MaLR 189 467 -148 293 319 65 6 chr15 90704064 90704233 -10676288 - MIR SINE MIR -12 250 72 244 276 53 0 chr15 90704712 90704788 -10675733 - MIR SINE MIR -14 248 169 456 283 25 0 chr15 90704811 90704931 -10675590 + MIR SINE MIR 20 142 -120 1283 254 15 4 chr15 90704937 90705201 -10675320 + Tigger7 DNA MER2_type 1 267 -466 557 192 0 10 chr15 90705207 90705311 -10675210 + Tigger7 DNA MER2_type 2389 2491 0 474 192 98 117 chr15 90707279 90707493 -10673028 + MER63A DNA MER1_type 1 210 0 2204 115 7 0 chr15 90708300 90708588 -10671933 - AluSg SINE Alu -20 290 1 826 224 50 10 chr15 90710531 90710732 -10669789 - MER3 DNA MER1_type 0 209 1 266 247 175 0 chr15 90711425 90711522 -10668999 + MIR SINE MIR 149 262 0 268 242 22 33 chr15 90712660 90712751 -10667770 + MIR SINE MIR 34 123 -139 1135 138 44 0 chr15 90713896 90714077 -10666444 + THE1B LTR MaLR 31 219 -145 1430 188 3 52 chr15 90714799 90715086 -10665435 - AluJo SINE Alu -37 275 3 982 193 99 31 chr15 90715102 90715222 -10665299 + MER8 DNA MER2_type 2 112 -127 2106 142 74 0 chr15 90715222 90715561 -10664960 + THE1B LTR MaLR 1 364 0 982 193 99 31 chr15 90715561 90715663 -10664858 + MER8 DNA MER2_type 112 239 0 367 307 37 23 chr15 90715702 90715917 -10664604 - L1M4 LINE L1 -1428 4718 4501 22 0 0 0 chr15 90716371 90716393 -10664128 + AT_rich Low_complexity Low_complexity 1 22 0 437 295 20 7 chr15 90717883 90718032 -10662489 - MIR SINE MIR -11 251 101 220 314 87 52 chr15 90719854 90720026 -10660495 - MIR SINE MIR -34 228 51 1615 152 82 61 chr15 90720050 90720379 -10660142 - MER1B DNA MER1_type 0 337 2 431 322 73 17 chr15 90723188 90723365 -10657156 - MIR SINE MIR -55 207 21 400 270 92 37 chr15 90725368 90725531 -10654990 + MIR SINE MIR 12 183 -79 805 257 69 0 chr15 90726660 90726862 -10653659 + MIR SINE MIR 47 262 0 856 212 81 0 chr15 90727383 90727581 -10652940 + MER58A DNA MER1_type 1 214 -10 215 306 86 119 chr15 90727597 90727933 -10652588 + L2 LINE L2 2947 3271 -1 225 250 104 73 chr15 90728665 90728761 -10651760 - MLT1E LTR MaLR -313 280 182 192 257 114 19 chr15 90728857 90728962 -10651559 - L3b LINE CR1 -216 1367 1253 263 0 81 0 chr15 90729855 90729892 -10650629 + A-rich Low_complexity Low_complexity 2 41 0 27 0 0 0 chr15 90732367 90732394 -10648127 + AT_rich Low_complexity Low_complexity 1 27 0 180 182 0 0 chr15 90732660 90732704 -10647817 + (TG)n Simple_repeat Simple_repeat 2 45 0 641 271 42 26 chr15 90733290 90733482 -10647039 + MIR SINE MIR 14 208 -54 1986 123 0 29 chr15 90733490 90733800 -10646721 + AluSx SINE Alu 6 306 -6 245 266 211 8 chr15 90734532 90734660 -10645861 + MER5B DNA MER1_type 6 159 -19 811 141 16 0 chr15 90736239 90736367 -10644154 + FRAM SINE Alu 35 164 -12 2321 78 0 0 chr15 90736437 90736730 -10643791 - AluSc SINE Alu -16 293 1 300 266 51 0 chr15 90736761 90736840 -10643681 + MIR SINE MIR 89 171 -91 274 306 171 26 chr15 90737963 90738156 -10642365 + MIR SINE MIR 36 256 -6 832 125 8 0 chr15 90738314 90738442 -10642079 + AluSg/x SINE Alu 171 299 -13 219 298 107 12 chr15 90739409 90739493 -10641028 - MIR SINE MIR -140 122 31 184 269 0 19 chr15 90739586 90739638 -10640883 + L2 LINE L2 3220 3270 -2 449 193 286 6 chr15 90741415 90741576 -10638945 - MER3 DNA MER1_type -3 206 1 192 302 239 6 chr15 90741759 90741918 -10638603 + L2 LINE L2 2543 2738 -576 276 175 0 79 chr15 90741918 90741981 -10638540 - AluSg/x SINE Alu -85 215 171 622 257 30 68 chr15 90742528 90742793 -10637728 - MER112 DNA MER1_type 0 256 2 284 221 57 41 chr15 90743550 90743672 -10636849 + MER117 DNA MER1_type 72 195 -2 233 323 20 10 chr15 90743969 90744068 -10636453 - L1MC/D LINE L1 -2028 5780 5681 2194 98 20 13 chr15 90745510 90745816 -10634705 + MLT2A2 LTR ERVL 1 308 -145 206 333 15 0 chr15 90746311 90746377 -10634144 + MIR SINE MIR 48 114 -148 468 299 94 64 chr15 90747046 90747438 -10633083 - L1MC/D LINE L1 -320 5801 5440 1700 137 32 14 chr15 90747722 90748000 -10632521 - AluSx SINE Alu -29 283 1 214 289 165 58 chr15 90750554 90751087 -10629434 + L2 LINE L2 1684 2273 -1041 2975 177 24 2 chr15 90751268 90751805 -10628716 + MER34C LTR ERV1 37 585 0 282 272 172 28 chr15 90751805 90752095 -10628426 + MLT2E LTR ERVL 125 456 -172 192 77 0 0 chr15 90752166 90752192 -10628329 + (CCCCAG)n Simple_repeat Simple_repeat 4 29 0 232 75 100 0 chr15 90752241 90752281 -10628240 - MADE1 DNA Mariner -36 44 1 201 262 151 48 chr15 90752327 90752438 -10628083 + L2 LINE L2 3133 3260 -12 191 36 36 0 chr15 90752438 90752466 -10628055 + (TA)n Simple_repeat Simple_repeat 2 30 0 201 262 151 48 chr15 90752466 90752480 -10628041 + L2 LINE L2 3260 3271 -1 1800 201 20 22 chr15 90753206 90753564 -10626957 + MLT1A1 LTR MaLR 6 362 -3 316 287 114 53 chr15 90754803 90754951 -10625570 + L1MC4a LINE L1 5633 5771 -2037 26485 28 0 0 chr15 90754951 90758848 -10621673 + L1PA2 LINE L1 2261 6155 0 316 287 114 53 chr15 90758848 90759228 -10621293 + L1MC4a LINE L1 5771 6240 -1568 532 200 122 0 chr15 90759686 90759801 -10620720 - AluJo/FRAM SINE Alu -6 306 178 642 199 8 15 chr15 90759802 90759933 -10620588 - FLAM_A SINE Alu -3 130 1 514 320 61 12 chr15 90761073 90761320 -10619201 - L1ME4a LINE L1 -5 6116 5858 223 311 0 16 chr15 90761410 90761471 -10619050 + L2 LINE L2 3189 3248 -24 439 238 29 95 chr15 90761593 90761803 -10618718 - MER102a DNA MER1_type -3 327 132 3385 124 27 25 chr15 90761888 90762414 -10618107 - MER1A DNA MER1_type 0 527 1 938 219 14 14 chr15 90762579 90762798 -10617723 + MER20 DNA MER1_type 1 219 0 534 279 55 0 chr15 90762806 90762971 -10617550 + MER5B DNA MER1_type 1 174 -4 209 265 120 77 chr15 90762975 90763092 -10617429 + L2 LINE L2 3148 3269 -3 240 282 97 112 chr15 90763813 90764172 -10616349 - L2 LINE L2 -57 3215 2861 2061 96 0 11 chr15 90764172 90764454 -10616067 + AluSx SINE Alu 22 300 -12 240 282 97 112 chr15 90764454 90764505 -10616016 - L2 LINE L2 -411 2861 2811 392 253 185 7 chr15 90764630 90764776 -10615745 + MIR SINE MIR 29 200 -62 216 0 0 0 chr15 90764909 90764933 -10615588 + (T)n Simple_repeat Simple_repeat 1 24 0 221 333 53 0 chr15 90766557 90766671 -10613850 - L2 LINE L2 -605 2709 2590 369 250 12 12 chr15 90766958 90767042 -10613479 - L3 LINE CR1 -89 1488 1405 518 308 151 0 chr15 90768269 90768454 -10612067 - MIR SINE MIR -30 232 20 606 285 150 52 chr15 90770831 90771291 -10609230 + L2 LINE L2 2807 3311 -2 253 241 48 48 chr15 90771566 90771649 -10608872 - L3b LINE CR1 -385 1198 1116 2020 102 61 0 chr15 90772372 90772665 -10607856 - AluSq SINE Alu -2 311 1 2696 249 81 7 chr15 90772674 90773413 -10607108 - L1ME3 LINE L1 -1 6161 5368 185 258 97 0 chr15 90773453 90773515 -10607006 + L2 LINE L2 1349 1416 -1898 361 322 159 42 chr15 90773624 90774425 -10606096 + L2 LINE L2 1585 2478 -836 483 318 7 0 chr15 90774614 90774768 -10605753 + MER117 DNA MER1_type 9 163 -34 211 289 124 10 chr15 90775024 90775121 -10605400 + L2 LINE L2 3154 3261 -11 234 310 9 9 chr15 90775711 90775824 -10604697 + (TATATG)n Simple_repeat Simple_repeat 5 117 0 649 281 119 43 chr15 90775861 90776337 -10604184 + L2 LINE L2 2526 3050 -263 345 210 0 50 chr15 90776848 90776948 -10603573 - MER113 DNA MER1_type? -420 101 7 588 294 111 4 chr15 90779558 90779793 -10600728 - MIR SINE MIR -1 261 2 204 125 0 0 chr15 90779876 90779908 -10600613 + (TAA)n Simple_repeat Simple_repeat 2 33 0 243 0 0 0 chr15 90779969 90779996 -10600525 + (T)n Simple_repeat Simple_repeat 1 27 0 213 299 19 65 chr15 90780214 90780321 -10600200 + MIR SINE MIR 159 260 -2 387 268 21 67 chr15 90780860 90781026 -10599495 - MIR SINE MIR -45 163 5 312 296 30 30 chr15 90781804 90781936 -10598585 + MER5A DNA MER1_type 40 171 -18 278 242 42 21 chr15 90783021 90783116 -10597405 + MER103 DNA DNA 59 155 -11 324 291 29 22 chr15 90783251 90783403 -10597118 + MER5B DNA MER1_type 23 186 -3 215 323 0 0 chr15 90784028 90784090 -10596431 - L2 LINE L2 0 3272 3211 359 310 270 6 chr15 90785050 90785395 -10595126 - L2 LINE L2 -23 3249 2814 196 202 182 40 chr15 90785851 90785950 -10594571 + MIR SINE MIR 20 132 -76 233 316 25 13 chr15 90786527 90786606 -10593915 + MIR SINE MIR 2 81 -181 316 314 131 58 chr15 90786754 90787114 -10593407 - L2 LINE L2 0 3272 2887 282 346 20 10 chr15 90787831 90787932 -10592589 + MIR SINE MIR 119 220 -42 * 283 298 75 11 chr15 90787909 90788003 -10592518 - MIR SINE MIR -127 135 36 1862 113 3 33 chr15 90790532 90790834 -10589687 - AluSx SINE Alu -17 295 3 705 257 92 19 chr15 90792013 90792219 -10588302 + MIR SINE MIR 11 231 -31 198 0 0 0 chr15 90792279 90792301 -10588220 + (TTAA)n Simple_repeat Simple_repeat 4 25 0 572 301 98 17 chr15 90792757 90792993 -10587528 - MIR SINE MIR -6 256 2 559 254 67 7 chr15 90793208 90793363 -10587158 + MIR SINE MIR 20 184 -62 2169 104 3 0 chr15 90794299 90794596 -10585925 - AluSx SINE Alu -14 298 1 372 291 48 30 chr15 90794778 90794943 -10585578 + MLT1I LTR MaLR 41 208 -201 629 231 16 0 chr15 90794977 90795098 -10585423 + MLT1I LTR MaLR 287 409 0 2136 112 3 13 chr15 90795726 90796038 -10584483 - AluSq SINE Alu -4 309 1 250 240 230 10 chr15 90796818 90796918 -10583603 + MIR SINE MIR 17 138 -124 * 430 274 51 8 chr15 90796917 90797110 -10583411 - MIR SINE MIR -10 252 2 212 288 0 41 chr15 90797117 90797190 -10583331 + MIR SINE MIR 147 216 -46 187 378 24 0 chr15 90798293 90798375 -10582146 - L2 LINE L2 -254 3018 2935 512 214 0 10 chr15 90798547 90798650 -10581871 + MIR3 SINE MIR 92 193 -15 1066 221 141 86 chr15 90799353 90799865 -10580656 + MLT1F LTR MaLR 3 542 0 410 259 0 0 chr15 90799865 90799946 -10580575 + MLT1I LTR MaLR 101 181 -228 500 257 0 0 chr15 90800096 90800201 -10580320 + MLT1I LTR MaLR 293 397 -12 261 346 94 45 chr15 90800484 90800686 -10579835 - MIR SINE MIR -31 231 20 459 235 0 42 chr15 90802061 90802180 -10578341 - L2 LINE L2 0 3313 3200 2665 149 26 2 chr15 90802282 90802698 -10577823 + MSTB LTR MaLR 1 426 0 302 331 71 18 chr15 90804601 90804770 -10575751 - MIR SINE MIR -50 212 35 960 203 10 20 chr15 90804799 90804996 -10575525 + MIR SINE MIR 43 237 -25 182 281 18 18 chr15 90804968 90805025 -10575496 + L2 LINE L2 3214 3270 -2 * 2041 222 75 10 chr15 90805424 90805938 -10574583 + MER119 DNA MER1_type 4 583 0 368 260 113 73 chr15 90806219 90806369 -10574152 - L2 LINE L2 -10 3303 3148 2145 81 0 3 chr15 90806490 90806823 -10573698 + AluY SINE Alu 1 332 0 890 236 101 52 chr15 90806859 90807206 -10573315 + MLT1D LTR MaLR 3 366 -139 2148 90 0 20 chr15 90807306 90807605 -10572916 + AluSq SINE Alu 8 300 -13 508 183 31 0 chr15 90807608 90807713 -10572808 - MER5A DNA MER1_type -77 112 4 824 200 44 6 chr15 90807768 90807948 -10572573 - MER5A DNA MER1_type -2 187 1 226 250 0 17 chr15 90809008 90809068 -10571453 + L1ME LINE L1 5792 5850 -271 2104 94 0 3 chr15 90809072 90809359 -10571162 + AluSg SINE Alu 1 286 -24 21 36 0 0 chr15 90809911 90809939 -10570582 + AT_rich Low_complexity Low_complexity 1 28 0 351 330 115 51 chr15 90810588 90810997 -10569524 - L2 LINE L2 0 3272 2838 243 305 98 0 chr15 90811474 90811556 -10568965 - Tigger8 DNA MER2_type -568 98 9 198 182 0 0 chr15 90811605 90811638 -10568883 + L2 LINE L2 3222 3254 -18 286 271 129 29 chr15 90811991 90812161 -10568360 - L2 LINE L2 -205 3067 2881 1738 75 0 0 chr15 90813189 90813415 -10567106 + AluY SINE Alu 86 311 0 255 376 21 72 chr15 90813749 90814039 -10566482 + L2 LINE L2 2939 3213 -59 413 265 139 24 chr15 90814221 90814387 -10566134 - L1ME LINE L1 -302 5819 5635 225 293 51 38 chr15 90814434 90814591 -10565930 - L1ME LINE L1 -2075 4071 3913 927 265 129 64 chr15 90814613 90815085 -10565436 + LTR33 LTR ERVL 5 507 -14 539 261 48 43 chr15 90815395 90815583 -10564938 + HERV16 LTR ERVL 1752 1940 -3056 896 343 70 7 chr15 90815689 90816120 -10564401 + HERV16 LTR ERVL 2346 2803 -2961 602 284 59 27 chr15 90816118 90816340 -10564181 + HERV16 LTR ERVL 3415 3643 -2121 * 825 306 81 13 chr15 90816408 90816793 -10563728 + HERV16 LTR ERVL 3775 4185 -1579 410 326 86 16 chr15 90816870 90817115 -10563406 + HERV16 LTR ERVL 4296 4557 -1207 2304 55 6 32 chr15 90817118 90817429 -10563092 + AluY SINE Alu 1 303 -8 369 344 21 5 chr15 90817966 90818152 -10562369 + HERV16 LTR ERVL 5175 5363 -401 446 279 113 68 chr15 90818268 90818755 -10561766 - HAL1 LINE L1 -1209 1298 884 373 305 42 16 chr15 90819405 90819595 -10560926 - L1ME4a LINE L1 -238 5883 5689 1485 224 39 7 chr15 90819698 90820157 -10560364 + L1ME2 LINE L1 4187 4660 -1486 885 150 0 27 chr15 90820935 90821082 -10559439 + FLAM_C SINE Alu 1 143 0 25 51 0 0 chr15 90821174 90821213 -10559308 + AT_rich Low_complexity Low_complexity 1 39 0 982 252 59 12 chr15 90821213 90822074 -10558447 + L1ME2 LINE L1 4643 5580 -586 1927 104 83 3 chr15 90822074 90822363 -10558158 - AluSx SINE Alu 0 312 1 982 252 59 12 chr15 90822363 90822390 -10558131 + L1ME2 LINE L1 5580 5604 -562 1631 195 55 14 chr15 90822390 90822738 -10557783 + MLT2D LTR ERVL 16 377 -37 207 114 0 0 chr15 90823922 90823957 -10556564 + (CA)n Simple_repeat Simple_repeat 1 35 0 387 332 66 18 chr15 90823968 90824254 -10556267 + L1MA5A LINE L1 5588 5887 -410 * 2018 219 48 29 chr15 90824001 90824527 -10555994 + L1ME2 LINE L1 5619 6154 -10 456 258 144 21 chr15 90824772 90824966 -10555555 - MLT1J LTR MaLR -46 465 248 516 230 0 0 chr15 90824971 90825084 -10555437 + L2 LINE L2 1591 1703 -1611 1872 152 18 0 chr15 90825094 90825371 -10555150 + AluSx SINE Alu 1 282 -30 677 138 28 0 chr15 90825375 90825520 -10555001 + (TA)n Simple_repeat Simple_repeat 1 149 0 185 246 18 53 chr15 90825520 90825577 -10554944 + L2 LINE L2 1720 1774 -1540 204 111 0 0 chr15 90826193 90826229 -10554292 + (ATG)n Simple_repeat Simple_repeat 3 38 0 12663 93 2 20 chr15 90826627 90828403 -10552118 + HERV9 LTR ERV1 6656 8399 0 278 211 0 0 chr15 90828403 90828455 -10552066 + LTR30 LTR ERV1 1 52 -670 1375 106 127 77 chr15 90828455 90828790 -10551731 + LTR12 LTR ERV1 57 2006 -432 335 274 17 0 chr15 90828790 90828907 -10551614 + LTR30 LTR ERV1 524 642 -80 736 111 0 0 chr15 90828910 90829009 -10551512 + LTR12 LTR ERV1 615 713 -1 5105 237 58 14 chr15 90829009 90830820 -10549701 + L1ME LINE L1 3682 5573 -593 1124 258 72 12 chr15 90831089 90831492 -10549029 + L1ME4a LINE L1 5531 5957 -164 28 71 0 0 chr15 90831634 90831690 -10548831 + AT_rich Low_complexity Low_complexity 1 56 0 594 276 149 54 chr15 90832591 90833088 -10547433 + L1MCc LINE L1 19 562 -5861 435 154 0 26 chr15 90833276 90833354 -10547167 + L1MCc LINE L1 1187 1262 -5161 1178 61 7 7 chr15 90833357 90833504 -10547017 - AluSp/q SINE Alu -11 302 156 869 234 61 18 chr15 90833506 90833903 -10546618 + L1MCc LINE L1 1279 1694 -4890 2219 89 13 13 chr15 90834416 90834719 -10545802 - AluY SINE Alu -8 303 1 6037 145 86 51 chr15 90835646 90836732 -10543789 + Tigger3b DNA MER2_type 2 1134 -1894 1951 121 7 4 chr15 90836732 90837012 -10543509 - AluSx SINE Alu -31 281 1 6037 145 86 51 chr15 90837012 90837114 -10543407 + Tigger3b DNA MER2_type 1134 1231 0 1055 278 78 28 chr15 90837454 90837952 -10542569 - MLT1G3 LTR MaLR 0 555 2 370 317 103 41 chr15 90837954 90838273 -10542248 - MLT1G3-int LTR MaLR -1 1370 1032 1049 208 26 35 chr15 90838377 90838398 -10542123 - MLT1F1 LTR MaLR -2 565 545 1900 151 75 28 chr15 90838398 90838756 -10541765 - THE1C LTR MaLR 0 375 1 1049 208 26 35 chr15 90838756 90838960 -10541561 - MLT1F1 LTR MaLR -22 545 342 844 260 108 22 chr15 90839080 90839349 -10541172 - MLT1F1 LTR MaLR -225 317 26 1400 182 20 123 chr15 90841366 90841772 -10538749 + MLT1A1 LTR MaLR 2 365 0 356 152 91 0 chr15 90842024 90842090 -10538431 + L1PA15 LINE L1 6092 6163 -2 23 0 0 0 chr15 90842335 90842358 -10538163 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr15 90842384 90842413 -10538108 + (T)n Simple_repeat Simple_repeat 1 29 0 1560 220 92 71 chr15 90842904 90843413 -10537108 - MLT2B1 LTR ERVL 0 520 1 324 243 14 0 chr15 90844891 90844965 -10535556 + MER116 DNA Mariner 1 75 -5 2360 204 55 4 chr15 90845171 90845666 -10534855 + L1MB8 LINE L1 5443 5962 -216 341 244 77 0 chr15 90845668 90845746 -10534775 + MER44D DNA MER2_type 1 84 -621 1761 159 40 3 chr15 90845846 90846142 -10534379 + MER44D DNA MER2_type 235 596 -9 457 204 8 45 chr15 90846162 90846294 -10534227 + L1MB8 LINE L1 5964 6090 -88 372 219 31 0 chr15 90846670 90846766 -10533755 + L1P5 LINE L1 -564 4294966830 -6670 6211 171 50 20 chr15 90846793 90849555 -10530966 + L1P5 LINE L1 1 2429 -3774 4291 156 41 66 chr15 90849558 90850486 -10530035 + HUERS-P1 LTR ERV1 4815 5719 -544 2181 172 0 34 chr15 90850475 90850888 -10529633 + HUERS-P1 LTR ERV1 5861 6259 -4 * 3227 153 25 60 chr15 90850892 90851494 -10529027 + LTR8 LTR ERV1 1 581 -110 12810 194 35 14 chr15 90851500 90854727 -10525794 + L1P5 LINE L1 2433 5721 -490 1961 170 8 64 chr15 90855101 90855489 -10525032 + MER47A DNA MER2_type 1 366 0 378 333 22 7 chr15 90855634 90855772 -10524749 - MIR SINE MIR -15 247 108 774 127 299 0 chr15 90855816 90855973 -10524548 - MER20 DNA MER1_type -15 204 1 274 299 0 0 chr15 90857422 90857489 -10523032 - L2 LINE L2 0 3313 3247 1459 209 42 37 chr15 90858444 90858845 -10521676 - L1 LINE L1 -757 5389 4987 7723 29 4 1 chr15 90858850 90859749 -10520772 - L1PA3 LINE L1 0 6155 5254 17666 36 3 1 chr15 90859754 90861862 -10518659 + L1PA3 LINE L1 3132 5244 -902 2188 141 6 96 chr15 90861861 90862349 -10518172 - L1 LINE L1 -1158 4988 4545 * 1839 233 49 16 chr15 90863904 90864354 -10516167 - MLT1C LTR MaLR -2 465 1 257 326 70 12 chr15 90865628 90865714 -10514807 + MIR3 SINE MIR 15 105 -103 648 302 9 32 chr15 90867036 90867388 -10513133 + MLT1I LTR MaLR 8 398 -11 736 293 84 0 chr15 90868353 90868568 -10511953 + MIR SINE MIR 8 240 -22 246 291 60 20 chr15 90868581 90868732 -10511789 - MLT1J LTR MaLR -352 159 3 564 234 116 21 chr15 90868953 90869169 -10511352 - MIR SINE MIR 0 262 32 260 346 45 19 chr15 90871022 90871178 -10509343 + L2 LINE L2 2945 3104 -168 670 220 27 70 chr15 90871370 90871556 -10508965 + MER5B DNA MER1_type 1 178 0 224 197 180 0 chr15 90871607 90871668 -10508853 + L2 LINE L2 3201 3272 0 548 165 0 8 chr15 90872202 90872252 -10508269 + CT-rich Low_complexity Low_complexity 4 53 -70 1786 157 0 22 chr15 90872252 90872570 -10507951 - AluJo SINE Alu -1 311 1 548 165 0 8 chr15 90872570 90872640 -10507881 + CT-rich Low_complexity Low_complexity 53 123 0 2026 167 3 9 chr15 90873675 90874005 -10506516 + MLT1A1 LTR MaLR 34 361 -4 2284 77 3 0 chr15 90874513 90874811 -10505710 + AluY SINE Alu 1 299 -12 361 262 21 48 chr15 90875752 90875897 -10504624 + LTR33 LTR ERVL 13 153 -368 531 249 124 35 chr15 90875937 90876194 -10504327 + LTR33 LTR ERVL 242 521 0 502 316 23 32 chr15 90876325 90876611 -10503910 - L1ME3A LINE L1 -263 5899 5618 227 282 86 8 chr15 90876749 90876909 -10503612 - L1ME3A LINE L1 -736 5426 5256 * 303 270 9 0 chr15 90876899 90877010 -10503511 - L1ME3A LINE L1 -2368 3778 3667 281 229 157 0 chr15 90877048 90877118 -10503403 + L2 LINE L2 2541 2621 -693 238 339 74 8 chr15 90877314 90877435 -10503086 + MIR SINE MIR 61 189 -73 1098 178 9 37 chr15 90878384 90878598 -10501923 - MER20 DNA MER1_type -10 209 2 711 288 168 25 chr15 90878719 90879153 -10501368 - L2 LINE L2 -1 3312 2817 742 290 144 17 chr15 90879208 90879341 -10501180 + L2 LINE L2 809 924 -2390 1755 143 18 4 chr15 90879341 90879620 -10500901 - AluJo SINE Alu -29 283 1 742 290 144 17 chr15 90879620 90880014 -10500507 + L2 LINE L2 924 1403 -1911 222 253 23 58 chr15 90880073 90880160 -10500361 + L2 LINE L2 3230 3313 0 895 296 125 30 chr15 90880160 90880599 -10499922 - L2 LINE L2 -572 2742 2262 258 264 68 54 chr15 90880612 90880760 -10499761 - MLT1I LTR MaLR -90 319 170 371 300 38 99 chr15 90880920 90881183 -10499338 - MIR SINE MIR -1 261 15 2234 193 45 16 chr15 90881553 90882040 -10498481 - MLT1D LTR MaLR 0 505 5 218 355 55 9 chr15 90882680 90882790 -10497731 - L2 LINE L2 -1 3312 3198 252 279 48 67 chr15 90883849 90883953 -10496568 - L2 LINE L2 0 3272 3171 529 259 40 10 chr15 90884133 90884382 -10496139 + MER115 DNA AcHobo 18 304 -389 349 246 9 44 chr15 90884632 90884746 -10495775 + MLT1K LTR MaLR 468 577 -11 201 364 45 56 chr15 90884746 90884944 -10495577 + MIR SINE MIR 55 250 -12 2220 147 17 149 chr15 90884966 90885490 -10495031 + LTR32 LTR ERVL 17 471 0 449 280 51 70 chr15 90885834 90886048 -10494473 - MLT1J LTR MaLR -78 433 224 1927 121 0 20 chr15 90886126 90886423 -10494098 + AluSx SINE Alu 1 291 -21 228 289 0 0 chr15 90886424 90886469 -10494052 - MLT1J1 LTR MaLR -321 125 81 965 154 22 44 chr15 90886692 90886874 -10493647 - MER5A DNA MER1_type -10 179 2 344 294 48 16 chr15 90887578 90887704 -10492817 - MER91A DNA MER1_type -66 130 1 265 324 140 0 chr15 90887716 90887852 -10492669 + MIR SINE MIR 102 256 -6 349 323 86 80 chr15 90888576 90888914 -10491607 - L2 LINE L2 -5 3267 2928 328 211 0 42 chr15 90889913 90889984 -10490537 + MER21B LTR ERV1 1 68 -795 483 181 0 0 chr15 90890016 90890088 -10490433 + MER21B LTR ERV1 18 89 -774 1772 187 47 19 chr15 90890091 90890461 -10490060 + MER21B LTR ERV1 43 502 -429 213 321 138 44 chr15 90890463 90890622 -10489899 - L2 LINE L2 -1230 2084 1911 186 171 0 0 chr15 90892369 90892410 -10488111 + CT-rich Low_complexity Low_complexity 5 45 0 310 293 191 11 chr15 90892621 90892809 -10487712 - MIR SINE MIR -36 226 5 217 217 0 65 chr15 90893301 90893347 -10487174 + L2 LINE L2 3217 3259 -13 373 359 39 22 chr15 90893706 90893887 -10486634 - MIR SINE MIR -70 192 9 602 312 80 5 chr15 90894720 90894919 -10485602 + MIR SINE MIR 1 214 -48 838 235 64 0 chr15 90895565 90895752 -10484769 + MER63A DNA MER1_type 1 199 -11 719 265 36 5 chr15 90895762 90895958 -10484563 - MIR SINE MIR -56 206 5 324 208 28 0 chr15 90896609 90896681 -10483840 - MER103 DNA DNA -11 155 82 480 291 74 21 chr15 90896917 90897106 -10483415 + MIR SINE MIR 36 234 -28 1034 99 78 52 chr15 90897117 90897308 -10483213 + THE1C LTR MaLR 178 373 -2 9796 116 77 10 chr15 90897309 90898790 -10481731 + THE1C-int LTR MaLR 1 1580 0 1952 154 65 20 chr15 90898793 90899149 -10481372 + THE1C LTR MaLR 4 375 0 359 290 97 21 chr15 90900082 90900227 -10480294 + MIR3 SINE MIR 32 187 -21 304 268 30 89 chr15 90900775 90901044 -10479477 + MER31-int LTR ERV1 1041 1293 -3643 341 279 105 33 chr15 90901448 90901839 -10478682 + MER31-int LTR ERV1 1698 2116 -2820 1823 148 35 67 chr15 90901842 90901884 -10478637 - THE1B LTR MaLR 0 364 322 2026 85 3 20 chr15 90901884 90902216 -10478305 + AluY SINE Alu 1 311 0 1823 148 35 67 chr15 90902216 90902546 -10477975 - THE1B LTR MaLR -42 322 4 341 215 11 0 chr15 90903677 90903770 -10476751 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 787 206 77 0 chr15 90903773 90903943 -10476578 - MLT2F LTR ERVL -60 603 421 771 214 157 58 chr15 90904708 90905053 -10475468 + LTR40c LTR ERVL 1 379 -86 216 0 0 0 chr15 90905233 90905257 -10475264 + (A)n Simple_repeat Simple_repeat 1 24 0 2140 116 0 0 chr15 90906181 90906475 -10474046 + AluSx SINE Alu 1 294 -18 513 296 52 56 chr15 90906475 90906626 -10473895 - MIR SINE MIR -24 238 87 2622 149 12 7 chr15 90906626 90907054 -10473467 + MSTB1 LTR MaLR 3 432 0 513 296 52 56 chr15 90907054 90907135 -10473386 - MIR SINE MIR -175 87 7 523 258 37 2 chr15 90909471 90909631 -10470890 - MER5B DNA MER1_type -1 177 24 214 200 164 18 chr15 90910037 90910092 -10470429 - MIR3 SINE MIR -6 202 140 563 228 20 91 chr15 90910279 90910476 -10470045 - MER5A DNA MER1_type -6 183 1 516 185 42 76 chr15 90910544 90910613 -10469908 + MER5B DNA MER1_type 3 68 -110 2105 167 19 3 chr15 90910613 90910972 -10469549 - MLT1A1 LTR MaLR 0 365 1 516 185 42 76 chr15 90910972 90911021 -10469500 + MER5B DNA MER1_type 68 117 -61 376 99 45 119 chr15 90911023 90911133 -10469388 - MLT1H LTR MaLR 0 610 375 235 296 136 12 chr15 90911297 90911378 -10469143 - MLT1I LTR MaLR -238 171 81 353 237 175 10 chr15 90911420 90911517 -10469004 + MER5B DNA MER1_type 65 177 -1 255 299 12 78 chr15 90911686 90911853 -10468668 - L3 LINE CR1 -302 1275 1120 338 224 112 56 chr15 90912099 90912224 -10468297 + MIR3 SINE MIR 60 191 -17 467 288 120 54 chr15 90912638 90912819 -10467702 + L2 LINE L2 2781 2949 -364 479 254 27 0 chr15 90912819 90912929 -10467592 - MER81 DNA DNA 0 114 2 467 288 120 54 chr15 90912929 90913069 -10467452 + L2 LINE L2 2949 3078 -235 1840 104 8 4 chr15 90913069 90913337 -10467184 + AluSx SINE Alu 30 298 -14 467 288 120 54 chr15 90913337 90913500 -10467021 + L2 LINE L2 3078 3298 -15 2142 107 3 3 chr15 90913742 90914051 -10466470 - AluSg SINE Alu -1 309 1 311 264 222 21 chr15 90914231 90914375 -10466146 - MIR SINE MIR -70 192 20 1372 216 81 34 chr15 90915630 90915987 -10464534 - MLT1A2 LTR MaLR 0 374 1 292 287 138 40 chr15 90915988 90916127 -10464394 + MIR SINE MIR 61 222 -40 2077 145 35 30 chr15 90916127 90916500 -10464021 + THE1C LTR MaLR 1 375 0 292 287 138 40 chr15 90916500 90916534 -10463987 + MIR SINE MIR 222 251 -11 253 316 187 0 chr15 90917745 90917932 -10462589 + L1MC/D LINE L1 5435 5656 -2152 282 365 29 6 chr15 90917956 90918126 -10462395 + L2 LINE L2 1182 1355 -1959 336 243 237 40 chr15 90918365 90918517 -10462004 + MER5A DNA MER1_type 2 183 -6 375 214 26 60 chr15 90918808 90918925 -10461596 - MLT2F LTR ERVL -523 140 28 820 278 106 53 chr15 90919013 90919578 -10460943 - L2 LINE L2 -972 2342 1748 293 219 50 51 chr15 90919604 90919731 -10460790 - MIR SINE MIR -73 135 10 1560 176 3 24 chr15 90920485 90920781 -10459740 + AluJo SINE Alu 1 290 -22 959 270 110 3 chr15 90920925 90921262 -10459259 + LTR16A LTR ERVL 1 373 -77 3196 280 89 36 chr15 90921303 90922576 -10457945 + HERV16 LTR ERVL 2 1341 -3655 289 212 127 51 chr15 90922576 90922694 -10457827 + LTR16A LTR ERVL 319 445 -5 1321 281 88 41 chr15 90923027 90923592 -10456929 - MLT1E LTR MaLR -1 592 1 563 266 30 34 chr15 90923697 90923930 -10456591 - L1ME4a LINE L1 -296 5825 5594 271 263 26 0 chr15 90924131 90924207 -10456314 - L1ME4a LINE L1 -521 5600 5523 302 93 0 19 chr15 90924330 90924384 -10456137 - HSMAR2 DNA Mariner -1 1301 1249 1407 156 61 34 chr15 90924704 90924838 -10455683 - L1MA9 LINE L1 -5 6307 6178 2020 127 0 23 chr15 90924838 90925138 -10455383 - AluSx SINE Alu -19 293 1 1407 156 61 34 chr15 90925138 90925329 -10455192 - L1MA9 LINE L1 -134 6178 5973 240 160 40 0 chr15 90925475 90925525 -10454996 - MER20 DNA MER1_type 0 219 168 191 222 152 61 chr15 90925886 90925916 -10454605 + L2 LINE L2 3145 3171 -101 2220 196 87 38 chr15 90925916 90926447 -10454074 + MER74A LTR ERVL 2 558 0 191 222 152 61 chr15 90926447 90926515 -10454006 + L2 LINE L2 3171 3252 -20 2117 91 8 0 chr15 90927068 90927331 -10453190 + AluSx SINE Alu 36 300 -12 292 161 0 0 chr15 90927560 90927622 -10452899 - L1MA7 LINE L1 -5 6286 6225 241 121 0 103 chr15 90928066 90928111 -10452410 - L1MB2 LINE L1 0 6171 6132 1017 199 57 116 chr15 90928111 90928499 -10452022 + MLT1A1 LTR MaLR 1 365 0 241 121 0 103 chr15 90928499 90928511 -10452010 - L1MB2 LINE L1 -39 6132 6120 939 184 25 0 chr15 90928511 90928669 -10451852 - AluSg/x SINE Alu -21 291 130 1197 205 68 14 chr15 90928669 90928962 -10451559 - L1MB4 LINE L1 -45 6135 5827 942 196 32 57 chr15 90929804 90930084 -10450437 - MER58D DNA MER1_type -3 383 111 573 274 66 46 chr15 90930247 90930488 -10450033 + MIR SINE MIR 17 262 0 2257 117 0 3 chr15 90931775 90932084 -10448437 + AluSc SINE Alu 1 308 -1 203 316 160 40 chr15 90932591 90932816 -10447705 + L2 LINE L2 1749 2000 -1314 1840 151 3 29 chr15 90933449 90933760 -10446761 - AluJb SINE Alu -9 303 1 363 241 11 11 chr15 90933788 90933875 -10446646 - MIR SINE MIR -122 140 54 188 298 18 0 chr15 90934161 90934218 -10446303 - L2 LINE L2 -21 3251 3194 241 276 61 98 chr15 90935980 90936130 -10444391 + L2 LINE L2 2850 2991 -281 508 259 73 116 chr15 90936130 90936485 -10444036 + MER102b DNA MER1_type 1 340 -1 241 276 61 98 chr15 90936485 90936548 -10443973 + L2 LINE L2 2991 3055 -217 228 291 164 30 chr15 90937307 90937441 -10443080 - MIR SINE MIR -62 200 49 220 294 71 56 chr15 90938744 90938870 -10441651 - L2 LINE L2 -21 3292 3165 2215 125 3 3 chr15 90938973 90939285 -10441236 + AluSx SINE Alu 1 312 0 307 319 37 31 chr15 90939328 90939491 -10441030 - L2 LINE L2 -211 3061 2898 21 0 0 0 chr15 90939694 90939715 -10440806 + AT_rich Low_complexity Low_complexity 1 21 0 236 307 137 38 chr15 90939954 90940166 -10440355 + L2 LINE L2 2036 2268 -1046 308 229 0 29 chr15 90940206 90940276 -10440245 + MIR SINE MIR 86 153 -55 192 289 0 39 chr15 90941520 90941572 -10438949 + L2 LINE L2 3210 3259 -13 342 317 78 7 chr15 90941782 90941924 -10438597 - MIR3 SINE MIR -23 185 34 321 274 96 20 chr15 90942282 90942428 -10438093 - L2 LINE L2 -7 3306 3150 2259 104 0 0 chr15 90942921 90943227 -10437294 + AluSg SINE Alu 1 306 0 23 0 0 0 chr15 90944426 90944449 -10436072 + AT_rich Low_complexity Low_complexity 1 23 0 272 231 26 26 chr15 90944588 90944666 -10435855 - MIR3 SINE MIR -7 201 124 440 335 86 25 chr15 90946480 90946725 -10433796 + MIR SINE MIR 3 262 0 438 287 20 47 chr15 90946916 90947066 -10433455 - MIR3 SINE MIR -12 196 51 275 257 10 79 chr15 90947658 90947759 -10432762 - MIR3 SINE MIR -34 174 81 2175 126 7 0 chr15 90948067 90948368 -10432153 + AluSx SINE Alu 1 303 -9 319 212 71 12 chr15 90948839 90948924 -10431597 - MLT1G LTR MaLR -500 90 1 869 292 231 10 chr15 90948924 90949331 -10431190 - L2 LINE L2 -5 3308 2812 323 167 15 0 chr15 90949331 90949397 -10431124 + GA-rich Low_complexity Low_complexity 3 69 0 7679 128 30 4 chr15 90949397 90950642 -10429879 - HSMAR2 DNA Mariner -23 1279 2 199 176 98 20 chr15 90954790 90954841 -10425680 - L2 LINE L2 -837 2477 2423 243 249 60 54 chr15 90955048 90955233 -10425288 - L1ME4a LINE L1 -3 6118 5933 536 299 123 5 chr15 90955233 90955435 -10425086 - MIR SINE MIR -20 242 17 652 321 64 22 chr15 90955435 90955746 -10424775 + MER5C DNA MER1_type 1 324 0 758 296 134 47 chr15 90956006 90956476 -10424045 + MLT1J LTR MaLR 1 511 0 1091 219 14 28 chr15 90956862 90957145 -10423376 - MER63 DNA MER1_type -70 990 712 346 279 67 10 chr15 90957283 90957387 -10423134 + MIR SINE MIR 33 142 -66 383 354 8 8 chr15 90957387 90957514 -10423007 + L2 LINE L2 3146 3272 0 192 40 0 0 chr15 90957874 90957899 -10422622 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 369 279 125 0 chr15 90958715 90958851 -10421670 + MIR SINE MIR 104 256 -6 377 205 111 60 chr15 90960233 90960350 -10420171 + L2 LINE L2 3134 3256 -16 200 182 0 0 chr15 90961816 90961849 -10418672 + C-rich Low_complexity Low_complexity 3 35 0 207 204 0 37 chr15 90962246 90962300 -10418221 + G-rich Low_complexity Low_complexity 3 54 0 204 125 0 0 chr15 90962337 90962369 -10418152 + (CCG)n Simple_repeat Simple_repeat 1 32 0 2404 82 16 0 chr15 90964878 90965219 -10415302 - AluSx SINE Alu 0 347 2 262 303 114 30 chr15 90966083 90966215 -10414306 + L2 LINE L2 3167 3309 -4 2455 87 0 3 chr15 90966282 90966594 -10413927 + AluSx SINE Alu 1 311 -1 234 319 43 51 chr15 90966622 90966760 -10413761 - MIR3 SINE MIR -30 178 42 341 309 0 0 chr15 90966901 90966985 -10413536 - MIR SINE MIR -10 252 169 534 240 159 43 chr15 90967020 90967228 -10413293 - MIR SINE MIR -29 233 2 251 292 113 84 chr15 90968417 90968808 -10411713 + L2 LINE L2 2870 3271 -1 776 246 68 19 chr15 90970694 90970901 -10409620 - MIR SINE MIR 0 262 46 207 0 0 0 chr15 90971281 90971304 -10409217 + (GA)n Simple_repeat Simple_repeat 2 24 0 237 119 0 0 chr15 90971420 90971462 -10409059 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 671 239 122 14 chr15 90971522 90971735 -10408786 - MIR SINE MIR -25 237 2 614 226 36 56 chr15 90972667 90972841 -10407680 + MIR SINE MIR 24 200 -62 3889 123 11 51 chr15 90972841 90972972 -10407549 + L1MB3 LINE L1 5539 5674 -509 2279 93 3 45 chr15 90972972 90973284 -10407237 + AluSx SINE Alu 1 299 -13 3889 123 11 51 chr15 90973284 90973412 -10407109 + L1MB3 LINE L1 5674 5806 -377 759 150 8 0 chr15 90973412 90973532 -10406989 + FLAM_C SINE Alu 2 122 -11 3889 123 11 51 chr15 90973532 90973940 -10406581 + L1MB3 LINE L1 5806 6180 -3 614 226 36 56 chr15 90973940 90973977 -10406544 + MIR SINE MIR 200 228 -34 992 174 22 22 chr15 90974634 90974818 -10405703 - MER5A DNA MER1_type -5 184 1 472 207 171 50 chr15 90974838 90974978 -10405543 + MER5A DNA MER1_type 15 171 -18 2241 125 6 0 chr15 90975146 90975457 -10405064 + AluSq SINE Alu 1 313 0 217 167 125 0 chr15 90975569 90975617 -10404904 - MIR SINE MIR -56 152 99 742 180 75 15 chr15 90976199 90976399 -10404122 - MER113 DNA MER1_type? -298 223 12 317 312 16 0 chr15 90976779 90976904 -10403617 + L2 LINE L2 3161 3287 -26 223 204 0 20 chr15 90976908 90976957 -10403564 + GA-rich Low_complexity Low_complexity 2 49 0 2258 104 0 0 chr15 90977106 90977436 -10403085 - AluSg SINE Alu 0 330 1 321 274 96 20 chr15 90977929 90978075 -10402446 + L2 LINE L2 3150 3306 -7 322 308 77 14 chr15 90978433 90978576 -10401945 + MIR3 SINE MIR 34 185 -23 192 289 0 39 chr15 90978786 90978838 -10401683 - L2 LINE L2 -13 3259 3210 308 229 0 29 chr15 90980084 90980154 -10400367 - MIR SINE MIR -55 153 86 196 327 142 31 chr15 90980195 90980449 -10400072 - L2 LINE L2 -1046 2268 1987 21 0 0 0 chr15 90980648 90980669 -10399852 + AT_rich Low_complexity Low_complexity 1 21 0 307 319 37 31 chr15 90980872 90981035 -10399486 + L2 LINE L2 2898 3061 -211 2215 125 3 3 chr15 90981078 90981390 -10399131 - AluSx SINE Alu 0 312 1 220 294 71 56 chr15 90981493 90981619 -10398902 + L2 LINE L2 3165 3292 -21 228 291 164 30 chr15 90982922 90983056 -10397465 + MIR SINE MIR 49 200 -62 241 276 61 98 chr15 90983816 90983879 -10396642 - L2 LINE L2 -217 3055 2991 508 259 73 116 chr15 90983879 90984234 -10396287 - MER102b DNA MER1_type -1 340 1 241 276 61 98 chr15 90984234 90984384 -10396137 - L2 LINE L2 -281 2991 2850 188 298 18 0 chr15 90986146 90986203 -10394318 + L2 LINE L2 3194 3251 -21 363 241 11 11 chr15 90986489 90986576 -10393945 + MIR SINE MIR 54 140 -122 1857 154 0 29 chr15 90986604 90986916 -10393605 + AluJb SINE Alu 1 303 -9 203 316 160 40 chr15 90987551 90987776 -10392745 - L2 LINE L2 -1314 2000 1749 2393 97 0 3 chr15 90988288 90988597 -10391924 - AluSc SINE Alu -1 308 1 573 274 66 46 chr15 90989883 90990124 -10390397 - MIR SINE MIR 0 262 17 942 196 32 57 chr15 90990287 90990567 -10389954 + MER58 DNA MER1_type 2145 2417 -3 1197 205 68 14 chr15 90991411 90991704 -10388817 + L1MB4 LINE L1 5827 6135 -45 939 184 25 0 chr15 90991704 90991862 -10388659 + AluSg/x SINE Alu 130 291 -21 241 121 0 103 chr15 90991862 90991874 -10388647 + L1MB2 LINE L1 6120 6132 -39 1089 204 89 79 chr15 90991874 90992266 -10388255 - MSTD LTR MaLR 0 396 1 241 121 0 103 chr15 90992266 90992311 -10388210 + L1MB2 LINE L1 6132 6171 0 292 161 0 0 chr15 90992755 90992817 -10387704 + L1MA7 LINE L1 6225 6286 -5 2117 91 8 0 chr15 90993046 90993309 -10387212 - AluSx SINE Alu -12 300 36 240 160 40 0 chr15 90994217 90994267 -10386254 + MER20 DNA MER1_type 168 219 0 1485 150 61 34 chr15 90994413 90994604 -10385917 + L1MA9 LINE L1 5973 6178 -134 2171 107 0 23 chr15 90994604 90994904 -10385617 + AluSx SINE Alu 1 293 -19 1485 150 61 34 chr15 90994904 90995038 -10385483 + L1MA9 LINE L1 6178 6307 -5 180 0 0 0 chr15 90995058 90995078 -10385443 + (A)n Simple_repeat Simple_repeat 1 20 0 1862 157 7 0 chr15 90995499 90995807 -10384714 + AluSq SINE Alu 1 310 0 23 0 0 0 chr15 90997005 90997028 -10383493 + AT_rich Low_complexity Low_complexity 1 23 0 272 231 26 26 chr15 90997167 90997245 -10383276 - MIR3 SINE MIR -7 201 124 440 335 86 25 chr15 90999060 90999305 -10381216 + MIR SINE MIR 3 262 0 438 287 20 47 chr15 90999496 90999646 -10380875 - MIR3 SINE MIR -12 196 51 275 257 10 79 chr15 91000238 91000339 -10380182 - MIR3 SINE MIR -34 174 81 2175 126 7 0 chr15 91000647 91000948 -10379573 + AluSx SINE Alu 1 303 -9 188 282 248 26 chr15 91001402 91001519 -10379002 - L2 LINE L2 -8 3264 3122 187 256 22 100 chr15 91002860 91002950 -10377571 - L2 LINE L2 -4 3309 3227 814 219 86 55 chr15 91003633 91004053 -10376468 - MLT1D LTR MaLR 0 467 1 428 271 73 33 chr15 91004660 91004811 -10375710 - MER5B DNA MER1_type -4 174 18 360 279 18 0 chr15 91005726 91005837 -10374684 + MER81 DNA DNA 1 113 -1 531 280 34 46 chr15 91006524 91006699 -10373822 + MER5B DNA MER1_type 6 178 0 345 213 38 0 chr15 91006736 91006816 -10373705 + MER58B DNA MER1_type 177 259 -82 384 164 14 14 chr15 91006863 91006936 -10373585 + MER58B DNA MER1_type 269 341 0 391 336 8 0 chr15 91007941 91008060 -10372461 + MIR3 SINE MIR 59 178 -30 308 262 248 7 chr15 91008087 91008232 -10372289 - MER5A DNA MER1_type 0 189 10 212 361 24 12 chr15 91008625 91008708 -10371813 + MIR SINE MIR 173 256 -6 402 21 0 0 chr15 91009375 91009422 -10371099 + (CA)n Simple_repeat Simple_repeat 1 47 0 675 274 91 15 chr15 91009498 91009731 -10370790 - MIR SINE MIR -12 250 4 441 324 83 14 chr15 91010643 91010859 -10369662 + MIR SINE MIR 26 256 -6 291 303 149 9 chr15 91011353 91011574 -10368947 + L2 LINE L2 2720 2971 -343 344 265 81 66 chr15 91011583 91011756 -10368765 + MER5A DNA MER1_type 7 188 -1 613 278 76 40 chr15 91011850 91012100 -10368421 - MIR SINE MIR -1 261 1 266 307 184 0 chr15 91012144 91012258 -10368263 + L2 LINE L2 3166 3300 -13 351 231 77 0 chr15 91012810 91012901 -10367620 + MIR SINE MIR 54 151 -57 403 241 0 54 chr15 91012901 91013013 -10367508 + MER117 DNA MER1_type 7 112 -85 304 333 53 15 chr15 91013107 91013239 -10367282 + MIR SINE MIR 86 222 -40 871 247 107 28 chr15 91013807 91014315 -10366206 - MLT1G LTR MaLR -2 553 1 1387 256 142 58 chr15 91014315 91015208 -10365313 - L2 LINE L2 -5 3308 2316 319 300 93 27 chr15 91016454 91016604 -10363917 + L3 LINE CR1 1240 1399 -178 240 113 0 0 chr15 91016756 91016809 -10363712 - L1MB3 LINE L1 -4 6179 6127 * 5066 124 40 17 chr15 91016805 91017773 -10362748 - L1PA16 LINE L1 0 6166 5182 1543 165 23 37 chr15 91017795 91018187 -10362334 + L1M3 LINE L1 5034 5424 -756 2504 142 51 7 chr15 91018187 91018597 -10361924 - MSTA LTR MaLR 0 428 1 1543 165 23 37 chr15 91018597 91018729 -10361792 + L1M3 LINE L1 5424 5556 -624 394 303 28 0 chr15 91018884 91018993 -10361528 - MIR SINE MIR -110 152 41 432 240 66 0 chr15 91019541 91019672 -10360849 - MIR SINE MIR -62 146 28 1082 142 16 21 chr15 91019972 91020162 -10360359 + MER5A DNA MER1_type 1 189 0 204 407 101 20 chr15 91020214 91020413 -10360108 + L3 LINE CR1 96 310 -1267 392 276 0 0 chr15 91020572 91020670 -10359851 - MIR SINE MIR -74 188 91 182 163 163 0 chr15 91020733 91020776 -10359745 + L3 LINE CR1 1524 1573 -4 1032 305 195 56 chr15 91021014 91021879 -10358642 + L3 LINE CR1 536 1536 -41 1774 159 32 86 chr15 91021879 91022288 -10358233 - MLT1B LTR MaLR -3 387 1 1032 305 195 56 chr15 91022288 91022333 -10358188 + L3 LINE CR1 1536 1573 -4 1080 274 117 17 chr15 91023354 91023814 -10356707 - L1MC4a LINE L1 -1915 5893 5388 271 375 57 42 chr15 91024167 91024450 -10356071 - L2 LINE L2 -1 3271 2985 494 252 77 81 chr15 91025871 91026204 -10354317 - MLT1J2 LTR MaLR -6 444 74 218 267 89 111 chr15 91027187 91027322 -10353199 + MIR3 SINE MIR 27 158 -50 1759 101 31 4 chr15 91027396 91027654 -10352867 - AluSx SINE Alu -12 300 36 397 189 53 0 chr15 91027654 91027749 -10352772 + Charlie8 DNA MER1_type 67 166 -2251 440 247 219 0 chr15 91028027 91028173 -10352348 + MER5B DNA MER1_type 1 178 0 452 246 57 0 chr15 91028174 91028296 -10352225 + L3 LINE CR1 1389 1517 -60 544 284 7 19 chr15 91030769 91030924 -10349597 - MIR3 SINE MIR -11 197 45 181 227 182 30 chr15 91030903 91030969 -10349552 + MIR SINE MIR 68 143 -65 * 230 200 0 0 chr15 91031370 91031410 -10349111 + MER58B DNA MER1_type 1 40 -301 * 478 219 88 29 chr15 91031407 91031544 -10348977 + MER58B DNA MER1_type 197 341 0 298 286 22 0 chr15 91031559 91031650 -10348871 + MIR SINE MIR 46 138 -70 246 62 0 0 chr15 91031861 91031893 -10348628 + (T)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr15 91033546 91033574 -10346947 + AT_rich Low_complexity Low_complexity 1 28 0 251 85 21 0 chr15 91035395 91035442 -10345079 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 619 320 55 52 chr15 91036099 91036518 -10344003 + L2 LINE L2 2848 3267 -5 200 287 201 4 chr15 91036616 91036742 -10343779 - MIR SINE MIR -41 167 14 351 272 26 44 chr15 91038558 91038826 -10341695 + L2 LINE L2 2712 3066 -206 228 284 40 14 chr15 91038917 91038991 -10341530 + MER5B DNA MER1_type 45 120 -58 602 261 45 0 chr15 91039440 91039597 -10340924 - MER5B DNA MER1_type -14 164 1 448 306 0 0 chr15 91039844 91039955 -10340566 + L2 LINE L2 3202 3312 -1 776 263 21 5 chr15 91040987 91041177 -10339344 - MIR SINE MIR -40 222 30 254 287 74 9 chr15 91041236 91041344 -10339177 + MIR SINE MIR 136 250 -12 234 164 0 127 chr15 91042411 91042466 -10338055 + L2 LINE L2 3266 3313 0 442 295 174 24 chr15 91042709 91042916 -10337605 - MIR SINE MIR -1 261 24 1616 192 28 47 chr15 91042970 91043329 -10337192 - MLT1A2 LTR MaLR 0 374 23 391 269 182 25 chr15 91043980 91044222 -10336299 - L2 LINE L2 -1 3271 2992 28 86 0 0 chr15 91046531 91046601 -10333920 + AT_rich Low_complexity Low_complexity 1 70 0 304 236 18 55 chr15 91046846 91046956 -10333565 - LTR33A LTR ERVL 0 523 418 3554 51 2 0 chr15 91047417 91047850 -10332671 - L1PA7 LINE L1 -13 6141 5708 258 284 9 37 chr15 91047864 91047973 -10332548 - MIR SINE MIR -111 151 46 286 59 0 0 chr15 91049082 91049116 -10331405 + U2 snRNA snRNA 1 34 -154 5944 152 19 60 chr15 91050042 91051053 -10329468 + L1MA4 LINE L1 4160 5109 -1037 1703 170 0 19 chr15 91051053 91051365 -10329156 + AluJb SINE Alu 1 306 -6 5944 152 19 60 chr15 91051365 91051639 -10328882 + L1MA4 LINE L1 5109 5393 -753 1068 161 0 6 chr15 91051640 91051814 -10328707 + FRAM SINE Alu 1 170 -6 6227 98 18 2 chr15 91051814 91052707 -10327814 + L1MA4 LINE L1 5392 6298 -2 330 26 0 0 chr15 91052708 91052747 -10327774 + (CA)n Simple_repeat Simple_repeat 2 40 0 28 0 0 0 chr15 91052820 91052848 -10327673 + AT_rich Low_complexity Low_complexity 1 28 0 1230 247 230 39 chr15 91053325 91053960 -10326561 + HAL1 LINE L1 11 766 -1741 261 83 0 0 chr15 91053960 91053996 -10326525 + (A)n Simple_repeat Simple_repeat 1 36 0 434 262 106 97 chr15 91054072 91054393 -10326128 + MLT1I LTR MaLR 86 409 0 420 259 62 0 chr15 91054396 91054508 -10326013 + HAL1 LINE L1 781 899 -1608 * 2195 23 0 0 chr15 91054504 91054760 -10325761 - L1PA4 LINE L1 -2196 3950 3695 12208 30 0 2 chr15 91054760 91056964 -10323557 + L1PA4 LINE L1 3950 6155 0 459 243 75 41 chr15 91056965 91057232 -10323289 + HAL1 LINE L1 887 1162 -1345 511 302 55 39 chr15 91057233 91057415 -10323106 + HAL1 LINE L1 1203 1387 -1120 304 296 97 40 chr15 91057460 91057636 -10322885 + L1MEd LINE L1 58 243 -5876 1102 224 19 19 chr15 91058085 91058349 -10322172 + L1ME2 LINE L1 5572 5835 -329 424 373 53 0 chr15 91061310 91061519 -10319002 - MIR SINE MIR -19 243 24 219 248 10 99 chr15 91064267 91064368 -10316153 + MIR3 SINE MIR 6 97 -111 1347 141 0 96 chr15 91065603 91065894 -10314627 + L1MA5A LINE L1 6031 6293 -4 369 305 46 0 chr15 91066130 91066261 -10314260 - L2 LINE L2 -1 3312 3176 36 23 0 0 chr15 91066361 91066404 -10314117 + AT_rich Low_complexity Low_complexity 1 43 0 1665 193 18 48 chr15 91066615 91066798 -10313723 + MLT1B LTR MaLR 3 190 -200 2198 96 0 3 chr15 91066798 91067091 -10313430 + AluSg SINE Alu 1 292 -18 1665 193 18 48 chr15 91067091 91067307 -10313214 + MLT1B LTR MaLR 190 390 0 521 287 43 57 chr15 91068883 91069092 -10311429 + L1MC/D LINE L1 5404 5609 -2199 3865 151 6 14 chr15 91069095 91069738 -10310783 + L1PA15 LINE L1 5523 6160 -5 490 310 128 54 chr15 91069795 91069948 -10310573 + MLT1L LTR MaLR 3 143 -472 542 213 226 7 chr15 91069948 91070103 -10310418 - MER5A DNA MER1_type 0 189 1 490 310 128 54 chr15 91070103 91070520 -10310001 + MLT1L LTR MaLR 143 615 0 187 231 77 19 chr15 91071156 91071208 -10309313 - MIR SINE MIR -124 138 84 658 255 148 41 chr15 91071266 91071741 -10308780 + L1ME LINE L1 5260 5780 -341 387 297 127 12 chr15 91072765 91072930 -10307591 + L1MC1 LINE L1 5483 5666 -455 338 202 11 64 chr15 91073087 91073275 -10307246 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 * 377 165 40 45 chr15 91073266 91073442 -10307079 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 344 170 64 29 chr15 91073361 91073532 -10306989 + (TA)n Simple_repeat Simple_repeat 1 177 0 * 667 253 92 107 chr15 91073886 91073947 -10306574 + L1MEd LINE L1 318 378 -5741 2478 63 0 13 chr15 91073947 91074250 -10306271 + AluY SINE Alu 1 299 -12 667 253 92 107 chr15 91074250 91074694 -10305827 + L1MEd LINE L1 378 813 -5306 3012 137 34 0 chr15 91074694 91075160 -10305361 + L1MC1 LINE L1 5851 6332 -1 667 253 92 107 chr15 91075160 91075297 -10305224 + L1MEd LINE L1 813 951 -5168 * 1161 242 11 4 chr15 91075288 91075552 -10304969 + L1ME LINE L1 5421 5686 -480 736 240 145 32 chr15 91076069 91076493 -10304028 + L1ME LINE L1 5255 5654 -508 811 301 124 16 chr15 91076594 91077279 -10303242 + L1M4 LINE L1 4455 5213 -933 564 250 78 20 chr15 91077301 91077606 -10302915 + L1M4 LINE L1 5288 5650 -524 1567 258 144 36 chr15 91077622 91078282 -10302239 - MER21B LTR ERV1 -128 735 5 3216 89 2 35 chr15 91079104 91079567 -10300954 + LTR7 LTR ERV1 1 448 -2 10376 160 53 48 chr15 91079569 91082466 -10298055 + HERVH LTR ERV1 1 2995 -4718 5894 102 11 2 chr15 91082445 91083292 -10297229 + HERVH LTR ERV1 3140 3993 -3720 * 4454 138 0 8 chr15 91083294 91083961 -10296560 + HERVH LTR ERV1 4488 5149 -2564 1401 134 18 5 chr15 91083962 91084179 -10296342 + HERVH LTR ERV1 5600 5819 -1894 * 2357 116 48 13 chr15 91084177 91084556 -10295965 + HERVH LTR ERV1 7322 7713 0 2966 78 103 5 chr15 91084556 91084964 -10295557 + LTR7 LTR ERV1 1 448 -2 258 95 0 0 chr15 91085154 91085196 -10295325 + (CATA)n Simple_repeat Simple_repeat 2 43 0 389 221 200 0 chr15 91085381 91085521 -10295000 - L3 LINE CR1 -320 1257 1090 568 263 174 52 chr15 91085961 91086231 -10294290 - MER115 DNA AcHobo -260 433 131 358 190 168 58 chr15 91086876 91087013 -10293508 + MIR SINE MIR 97 248 -14 206 118 0 0 chr15 91087173 91087207 -10293314 + (T)n Simple_repeat Simple_repeat 1 34 0 23 42 0 21 chr15 91087660 91087686 -10292835 + AT_rich Low_complexity Low_complexity 1 27 -20 2234 114 0 0 chr15 91087686 91087985 -10292536 + AluSx SINE Alu 1 299 -13 23 42 0 21 chr15 91087985 91088006 -10292515 + AT_rich Low_complexity Low_complexity 27 47 0 1886 147 60 41 chr15 91088741 91089109 -10291412 + THE1C LTR MaLR 1 375 0 3100 98 32 132 chr15 91089189 91089779 -10290742 - LTR26B LTR ERV1 0 531 1 685 251 190 0 chr15 91089800 91090011 -10290510 + MIR SINE MIR 2 252 -10 2445 50 14 3 chr15 91090013 91090181 -10290340 - AluY SINE Alu -11 300 126 270 0 0 0 chr15 91090181 91090211 -10290310 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2445 50 14 3 chr15 91090211 91090339 -10290182 - AluY SINE Alu -185 126 1 280 197 164 0 chr15 91091071 91091132 -10289389 - MARNA DNA Mariner -373 213 143 377 308 80 7 chr15 91091191 91091393 -10289128 + MIR SINE MIR 29 243 -19 840 176 82 22 chr15 91091393 91091575 -10288946 + MLT1D LTR MaLR 1 193 -312 476 207 110 41 chr15 91091881 91092026 -10288495 - MLT1I LTR MaLR 0 409 255 708 130 12 25 chr15 91093396 91093557 -10286964 + CT-rich Low_complexity Low_complexity 2 160 0 1008 146 0 0 chr15 91093561 91093739 -10286782 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 293 243 155 44 chr15 91093758 91093984 -10286537 - L1ME4a LINE L1 0 6121 5871 4633 104 10 3 chr15 91094073 91094699 -10285822 - L1PA11 LINE L1 -2 6172 5543 22 35 0 0 chr15 91094713 91094742 -10285779 + AT_rich Low_complexity Low_complexity 1 29 0 375 266 0 0 chr15 91095329 91095423 -10285098 + LTR41 LTR ERVL 674 767 -6 1652 100 181 8 chr15 91095732 91095981 -10284540 + AluSg SINE Alu 1 292 -8 202 237 0 0 chr15 91096123 91096161 -10284360 - MIR SINE MIR -59 149 112 318 354 92 8 chr15 91096342 91096472 -10284049 + MER91A DNA MER1_type 1 141 -55 801 128 8 0 chr15 91096969 91097086 -10283435 + MSTA LTR MaLR 1 118 -310 2337 96 71 42 chr15 91097087 91097441 -10283080 + THE1B LTR MaLR 1 364 0 2715 102 0 3 chr15 91097442 91097815 -10282706 + THE1B-int LTR MaLR 2 373 -1207 776 144 24 8 chr15 91097815 91097940 -10282581 + MSTA LTR MaLR 302 428 0 626 243 104 12 chr15 91100792 91101177 -10279344 + LTR33A LTR ERVL 55 514 -9 532 217 223 0 chr15 91101709 91101866 -10278655 - MIR SINE MIR -6 256 65 1070 249 205 29 chr15 91101951 91101982 -10278539 - L2 LINE L2 0 3313 3289 2741 98 25 0 chr15 91101982 91102348 -10278173 + THE1C LTR MaLR 1 375 0 1070 249 205 29 chr15 91102348 91102731 -10277790 - L2 LINE L2 -24 3289 2975 2576 103 19 30 chr15 91102731 91103099 -10277422 - THE1B LTR MaLR 0 364 1 1070 249 205 29 chr15 91103099 91103307 -10277214 - L2 LINE L2 -338 2975 2593 610 94 31 10 chr15 91103307 91103403 -10277118 + MER4A LTR ERV1 1 98 -566 332 154 19 0 chr15 91103403 91103455 -10277066 + MER4A LTR ERV1 261 313 -351 1479 132 0 108 chr15 91103488 91103776 -10276745 + MER4A LTR ERV1 408 664 0 703 205 86 0 chr15 91103956 91104107 -10276414 + MER3 DNA MER1_type 2 165 -44 521 255 239 4 chr15 91105206 91105335 -10275186 - L2 LINE L2 -472 2842 2745 2998 176 76 17 chr15 91105335 91105915 -10274606 - MER90 LTR ERV1 0 614 1 521 255 239 4 chr15 91105915 91106036 -10274485 - L2 LINE L2 -569 2745 2533 395 301 155 69 chr15 91106050 91106425 -10274096 + L2 LINE L2 2866 3272 0 738 286 132 33 chr15 91106776 91107009 -10273512 - L2 LINE L2 0 3313 3105 2209 116 0 3 chr15 91107009 91107302 -10273219 + AluSx SINE Alu 1 292 -20 738 286 132 33 chr15 91107302 91107607 -10272914 - L2 LINE L2 -208 3105 2737 238 213 131 119 chr15 91107738 91107884 -10272637 - L1ME4a LINE L1 -2 6119 5976 2894 88 3 0 chr15 91107884 91108238 -10272283 - THE1A LTR MaLR 0 355 1 238 213 131 119 chr15 91108238 91108313 -10272208 - L1ME4a LINE L1 -145 5976 5903 1663 167 106 3 chr15 91108313 91108625 -10271896 - MER2 DNA MER2_type 0 344 1 238 213 131 119 chr15 91108625 91108745 -10271776 - L1ME4a LINE L1 -218 5903 5773 257 277 107 45 chr15 91109649 91109761 -10270760 + MER5A DNA MER1_type 56 174 -15 900 161 63 0 chr15 91109761 91109904 -10270617 - AluJb SINE Alu -20 292 141 786 133 4 208 chr15 91109944 91110011 -10270510 - MER5A DNA MER1_type 0 189 110 1914 179 13 43 chr15 91110011 91110403 -10270118 + L1MB4 LINE L1 5801 6180 0 786 133 4 208 chr15 91110403 91110561 -10269960 - MER5A DNA MER1_type -79 110 10 531 230 7 44 chr15 91110596 91110731 -10269790 - MER5B DNA MER1_type -46 132 3 1978 154 36 25 chr15 91111604 91111655 -10268866 + L1MC1 LINE L1 5964 6013 -320 2560 112 27 14 chr15 91111655 91112022 -10268499 - THE1C LTR MaLR -3 372 1 1978 154 36 25 chr15 91112022 91112328 -10268193 + L1MC1 LINE L1 6013 6325 -8 501 267 157 39 chr15 91114411 91114951 -10265570 + L1M4 LINE L1 4490 5093 -1053 247 305 139 5 chr15 91115051 91115238 -10265283 - L2 LINE L2 -1776 1538 1327 180 0 0 0 chr15 91116312 91116332 -10264189 + (CAA)n Simple_repeat Simple_repeat 2 21 0 506 236 20 91 chr15 91116520 91116719 -10263802 - MIR SINE MIR -7 255 71 392 289 104 52 chr15 91116726 91116975 -10263546 - MLT1J LTR MaLR -109 402 141 702 272 38 21 chr15 91117005 91117240 -10263281 - LTR33 LTR ERVL -43 478 240 1308 203 59 90 chr15 91117290 91117714 -10262807 + L1MDa LINE L1 259 669 -5871 1159 120 16 47 chr15 91117714 91117905 -10262616 + MLT1B LTR MaLR 1 185 -205 4431 206 51 62 chr15 91117905 91119632 -10260889 + L1MDa LINE L1 778 2564 -3978 231 219 0 0 chr15 91119632 91119673 -10260848 + MLT2B1 LTR ERVL 1 41 -479 5616 161 63 11 chr15 91119673 91120014 -10260507 + ERVL-D LTR ERVL 4705 5027 -737 979 121 0 7 chr15 91120014 91120154 -10260367 + MER85 DNA T2_type 1 139 0 5616 161 63 11 chr15 91120154 91120813 -10259708 + ERVL-D LTR ERVL 5027 5757 -7 1670 216 26 29 chr15 91120813 91121246 -10259275 + MLT2D LTR ERVL 1 397 0 4526 229 45 18 chr15 91121252 91122592 -10257929 + L1MDa LINE L1 2566 3941 -2599 525 196 7 61 chr15 91122596 91122744 -10257777 + L1MDa LINE L1 5044 5183 -1357 * 814 221 40 22 chr15 91122740 91123012 -10257509 + L1MA7 LINE L1 3344 3620 -3945 10164 168 36 22 chr15 91123019 91125318 -10255203 + L1MA7 LINE L1 4366 6759 -951 2406 68 0 46 chr15 91125318 91125625 -10254896 + AluY SINE Alu 1 293 -18 10164 168 36 22 chr15 91125625 91126483 -10254038 + L1MA7 LINE L1 6759 7603 -107 3544 183 35 28 chr15 91126497 91127047 -10253474 + L1MB5 LINE L1 5160 5705 -863 1620 171 7 61 chr15 91127047 91127357 -10253164 + AluJo SINE Alu 1 293 -19 3544 183 35 28 chr15 91127357 91128029 -10252492 + L1MB5 LINE L1 5705 6407 -161 790 255 134 9 chr15 91128090 91128419 -10252102 + MLT1F1 LTR MaLR 1 370 -197 434 270 149 22 chr15 91128500 91128722 -10251799 - LTR16A1 LTR ERVL 0 457 208 180 111 0 0 chr15 91130645 91130672 -10249849 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2220 110 20 0 chr15 91131972 91132271 -10248250 + AluSc SINE Alu 1 305 -4 2420 180 24 0 chr15 91132277 91132693 -10247828 - MSTB LTR MaLR 0 426 1 3515 201 175 73 chr15 91132693 91134002 -10246519 - MSTB-int LTR MaLR 0 1580 139 3760 136 16 71 chr15 91134002 91134227 -10246294 + MER72 LTR ERV1 1 237 -485 2883 82 60 0 chr15 91134227 91134630 -10245891 - L1PA8 LINE L1 -10 6162 5736 3760 136 16 71 chr15 91134630 91135168 -10245353 + MER72 LTR ERV1 237 722 0 796 127 0 7 chr15 91135168 91135310 -10245211 - MSTB-int LTR MaLR -1510 141 1 2107 199 22 10 chr15 91135310 91135727 -10244794 - MSTB LTR MaLR -2 424 3 763 247 104 22 chr15 91136129 91136360 -10244161 - MIR SINE MIR 0 262 13 1745 175 27 0 chr15 91136551 91136843 -10243678 + AluJo SINE Alu 1 300 -12 1892 186 25 11 chr15 91136963 91137323 -10243198 + MLT1A1 LTR MaLR 1 365 0 181 203 81 40 chr15 91139056 91139130 -10241391 + L2 LINE L2 621 697 -2617 245 108 0 77 chr15 91139820 91139885 -10240636 + (GGAA)n Simple_repeat Simple_repeat 2 61 0 213 274 19 27 chr15 91139956 91140041 -10240480 + MIR3 SINE MIR 91 175 -33 1891 209 55 32 chr15 91140041 91140535 -10239986 + MLT1D LTR MaLR 1 505 0 213 274 19 27 chr15 91140535 91140553 -10239968 + MIR3 SINE MIR 175 192 -16 213 39 0 0 chr15 91141355 91141381 -10239140 + (T)n Simple_repeat Simple_repeat 1 26 0 208 355 73 39 chr15 91142923 91143260 -10237261 - L2 LINE L2 -338 2976 2625 1015 194 179 47 chr15 91143260 91143601 -10236920 + MLT1B LTR MaLR 5 390 0 208 355 73 39 chr15 91143601 91143621 -10236900 - L2 LINE L2 -689 2625 2607 489 300 71 26 chr15 91144820 91145122 -10235399 + L1ME LINE L1 5443 5752 -369 30 0 0 0 chr15 91145168 91145198 -10235323 + AT_rich Low_complexity Low_complexity 1 30 0 207 292 97 81 chr15 91146712 91147095 -10233426 + L2 LINE L2 2843 3231 -41 507 254 16 0 chr15 91148850 91148976 -10231545 - MER119 DNA MER1_type -1 582 455 321 307 61 18 chr15 91148979 91149093 -10231428 - MER119 DNA MER1_type -462 121 3 2502 63 7 3 chr15 91149327 91149626 -10230895 + AluSp SINE Alu 1 300 -13 183 331 73 52 chr15 91149814 91149950 -10230571 + L2 LINE L2 3125 3263 -9 262 158 70 0 chr15 91150316 91150373 -10230148 + GA-rich Low_complexity Low_complexity 3 63 0 413 209 63 134 chr15 91151499 91151752 -10228769 + MER112 DNA MER1_type 13 247 -13 247 196 11 54 chr15 91155649 91155741 -10224780 + T-rich Low_complexity Low_complexity 1 88 0 357 261 90 18 chr15 91156578 91156689 -10223832 - L2 LINE L2 -50 3222 3104 25 0 0 0 chr15 91158349 91158374 -10222147 + AT_rich Low_complexity Low_complexity 1 25 0 1034 316 125 53 chr15 91161328 91162477 -10218044 + L1ME4a LINE L1 4172 5403 -743 237 269 0 0 chr15 91162951 91163003 -10217518 + L1ME4a LINE L1 5519 5570 -551 554 290 63 30 chr15 91163015 91163350 -10217171 + L1ME4a LINE L1 5772 6117 -4 487 271 91 23 chr15 91165341 91165562 -10214959 + MER112 DNA MER1_type 17 252 -8 608 255 71 67 chr15 91167709 91168126 -10212395 + MLT1J1 LTR MaLR 27 402 -7 212 324 73 22 chr15 91168365 91168501 -10212020 - L2 LINE L2 -4 3268 3126 522 244 0 47 chr15 91169966 91170093 -10210428 + L2 LINE L2 3193 3313 0 180 0 0 0 chr15 91170745 91170765 -10209756 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 777 124 91 0 chr15 91170765 91170886 -10209635 + FLAM_C SINE Alu 2 133 0 301 344 39 6 chr15 91171199 91171379 -10209142 + L1MEd LINE L1 488 673 -5446 1334 197 66 18 chr15 91172016 91172435 -10208086 - LTR2B LTR ERV1 0 490 7 509 246 17 8 chr15 91172454 91172572 -10207949 + L2 LINE L2 3195 3313 0 5946 19 17 0 chr15 91174462 91175098 -10205423 + SVA Other Other 740 1386 0 185 0 0 39 chr15 91175101 91175127 -10205394 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 457 232 53 0 chr15 91176505 91176600 -10203921 + MER5A DNA MER1_type 7 106 -83 234 360 0 0 chr15 91177297 91177383 -10203138 + MIR3 SINE MIR 96 181 -27 262 204 56 0 chr15 91178516 91178570 -10201951 + L2 LINE L2 3216 3272 0 779 173 7 21 chr15 91178585 91178870 -10201651 + GA-rich Low_complexity Low_complexity 1 281 0 1589 171 46 14 chr15 91179501 91179781 -10200740 + AluJb SINE Alu 14 302 -10 831 263 65 9 chr15 91180249 91180466 -10200055 - MIR SINE MIR -11 251 23 226 244 0 90 chr15 91180479 91180557 -10199964 + MIR SINE MIR 186 256 -6 527 268 132 4 chr15 91181482 91181717 -10198804 - MER115 DNA AcHobo -238 455 191 230 290 145 15 chr15 91181941 91182072 -10198449 + MIR SINE MIR 41 188 -74 231 217 0 17 chr15 91182277 91182337 -10198184 + (TGG)n Simple_repeat Simple_repeat 1 59 0 2192 107 24 3 chr15 91183462 91183753 -10196768 - AluSq SINE Alu -16 297 1 23 0 0 0 chr15 91185699 91185722 -10194799 + AT_rich Low_complexity Low_complexity 1 23 0 219 139 0 0 chr15 91186259 91186295 -10194226 + (CA)n Simple_repeat Simple_repeat 1 36 0 186 133 0 0 chr15 91186364 91186394 -10194127 + (A)n Simple_repeat Simple_repeat 1 30 0 1613 226 24 0 chr15 91187284 91187616 -10192905 - MER58B DNA MER1_type -1 340 1 2215 75 0 0 chr15 91187766 91188033 -10192488 + AluY SINE Alu 25 291 -20 2274 121 0 0 chr15 91188058 91188364 -10192157 + AluSx SINE Alu 1 306 -6 448 245 34 94 chr15 91188570 91188835 -10191686 + L1MC4 LINE L1 7794 8042 0 1869 166 10 0 chr15 91188856 91189151 -10191370 + AluJb SINE Alu 1 298 -14 2227 121 13 0 chr15 91190404 91190702 -10189819 + AluSq SINE Alu 1 302 -11 193 170 57 0 chr15 91191456 91191509 -10189012 + CT-rich Low_complexity Low_complexity 3 58 0 319 317 258 0 chr15 91193110 91193331 -10187190 + L1ME4a LINE L1 5840 6117 -4 272 274 75 20 chr15 91193495 91193641 -10186880 + L1M4 LINE L1 4146 4299 -1847 2397 80 3 0 chr15 91193641 91193941 -10186580 - AluY SINE Alu -10 301 1 21 0 0 0 chr15 91194003 91194024 -10186497 + AT_rich Low_complexity Low_complexity 1 21 0 2396 81 0 7 chr15 91194315 91194623 -10185898 + AluSc SINE Alu 1 306 -3 1090 174 56 0 chr15 91195475 91195670 -10184851 + MER2 DNA MER2_type 5 210 -135 1842 146 0 68 chr15 91195699 91196021 -10184500 - AluJb SINE Alu -9 303 4 441 263 47 17 chr15 91196374 91196610 -10183911 + L1M4 LINE L1 4399 4641 -1505 217 352 111 0 chr15 91196702 91196810 -10183711 + MIR SINE MIR 22 141 -67 2419 113 22 19 chr15 91197246 91197609 -10182912 + THE1B LTR MaLR 1 364 0 267 119 45 37 chr15 91198231 91198365 -10182156 + (TTATA)n Simple_repeat Simple_repeat 5 139 0 351 97 25 113 chr15 91198367 91198808 -10181713 + (CATATA)n Simple_repeat Simple_repeat 1 402 0 331 130 136 0 chr15 91198724 91198878 -10181643 + (TA)n Simple_repeat Simple_repeat 2 176 0 * 364 114 139 0 chr15 91198892 91199050 -10181471 + (TA)n Simple_repeat Simple_repeat 1 180 0 307 301 86 43 chr15 91199051 91199237 -10181284 - L1ME4a LINE L1 -157 5964 5771 38 0 0 0 chr15 91199237 91199275 -10181246 + AT_rich Low_complexity Low_complexity 1 38 0 2371 64 7 13 chr15 91199275 91199573 -10180948 - AluY SINE Alu -15 296 1 299 301 0 24 chr15 91199736 91199819 -10180702 + MIR3 SINE MIR 83 163 -45 1930 105 97 4 chr15 91200040 91200307 -10180214 + AluSc SINE Alu 1 292 -17 1749 153 0 44 chr15 91200307 91200600 -10179921 - AluJo SINE Alu -31 281 1 186 103 0 0 chr15 91201333 91201362 -10179159 + (CA)n Simple_repeat Simple_repeat 2 30 0 1237 226 105 34 chr15 91202445 91202905 -10177616 + MLT2B1 LTR ERVL 1 394 -20 318 26 0 0 chr15 91202937 91202976 -10177545 + (CA)n Simple_repeat Simple_repeat 1 39 0 2335 117 0 0 chr15 91203349 91203657 -10176864 - AluSx SINE Alu -3 309 2 1059 161 0 0 chr15 91203945 91204107 -10176414 + AluSg/x SINE Alu 137 298 -14 523 314 67 5 chr15 91204120 91204314 -10176207 - MIR SINE MIR -18 244 39 265 211 22 44 chr15 91204847 91204937 -10175584 + MLT1K LTR MaLR 117 204 -384 215 333 71 32 chr15 91206322 91206448 -10174073 + MIR3 SINE MIR 7 137 -71 281 294 138 29 chr15 91207107 91207327 -10173194 + L1MC4a LINE L1 4531 4725 -1421 2470 113 85 15 chr15 91207327 91207727 -10172794 + MSTA LTR MaLR 1 428 0 281 294 138 29 chr15 91207727 91207975 -10172546 + L1MC4a LINE L1 4725 5059 -1087 2389 112 0 0 chr15 91208047 91208359 -10172162 + AluSx SINE Alu 1 312 0 2299 117 13 0 chr15 91208415 91208722 -10171799 - AluSx SINE Alu -1 311 1 1174 253 118 14 chr15 91208747 91208840 -10171681 + L1MC4a LINE L1 5255 5337 -784 198 0 0 0 chr15 91208840 91208862 -10171659 + (CA)n Simple_repeat Simple_repeat 1 22 0 1174 253 118 14 chr15 91208862 91209284 -10171237 + L1MC4a LINE L1 5337 5837 -284 3575 188 38 42 chr15 91209355 91210195 -10170326 + L1MB8 LINE L1 4929 5771 -407 2326 119 32 19 chr15 91210195 91210565 -10169956 + THE1C LTR MaLR 1 375 0 3575 188 38 42 chr15 91210565 91210910 -10169611 + L1MB8 LINE L1 5771 6113 -65 831 128 15 23 chr15 91210910 91211043 -10169478 - FLAM_C SINE Alu 0 133 2 3575 188 38 42 chr15 91211043 91211109 -10169412 + L1MB8 LINE L1 6113 6178 0 306 73 0 0 chr15 91211122 91211163 -10169358 + (TG)n Simple_repeat Simple_repeat 2 42 0 564 299 41 33 chr15 91212579 91212823 -10167698 - Charlie8 DNA MER1_type -2171 246 1 190 245 88 59 chr15 91213139 91213241 -10167280 + L3b LINE CR1 1200 1304 -279 298 217 20 8 chr15 91214135 91214222 -10166299 + MIR SINE MIR 63 146 -62 2886 107 51 81 chr15 91214222 91214812 -10165709 + MER4B LTR ERV1 3 574 -36 285 280 13 0 chr15 91214868 91214943 -10165578 + MIR SINE MIR 187 262 0 5293 143 27 11 chr15 91215204 91216091 -10164430 + MER4D LTR ERV1 3 903 0 459 307 26 33 chr15 91216299 91216452 -10164069 + MIR3 SINE MIR 18 169 -39 305 285 124 8 chr15 91217345 91217485 -10163036 - MIR SINE MIR -23 185 37 241 206 32 0 chr15 91217506 91217569 -10162952 - MER20 DNA MER1_type -133 86 22 338 287 135 13 chr15 91218838 91219116 -10161405 + L1ME LINE L1 5389 5697 -473 393 317 114 7 chr15 91219266 91219547 -10160974 - L1ME4a LINE L1 -153 5968 5658 202 338 14 0 chr15 91219884 91219955 -10160566 - L2 LINE L2 0 3313 3242 240 111 0 0 chr15 91222566 91222602 -10157919 + (GAA)n Simple_repeat Simple_repeat 2 37 0 416 265 66 29 chr15 91222623 91222759 -10157762 + MIR3 SINE MIR 4 144 -64 22 35 0 0 chr15 91223273 91223302 -10157219 + GC_rich Low_complexity Low_complexity 1 29 0 503 235 20 92 chr15 91223777 91223973 -10156548 + MIR SINE MIR 71 252 -10 180 0 0 0 chr15 91224164 91224184 -10156337 + (TTG)n Simple_repeat Simple_repeat 2 21 0 326 335 103 59 chr15 91225751 91225979 -10154542 + HAL1 LINE L1 825 1042 -1465 321 89 0 0 chr15 91225979 91226024 -10154497 + (A)n Simple_repeat Simple_repeat 1 45 0 326 335 103 59 chr15 91226024 91226228 -10154293 + HAL1 LINE L1 1042 1322 -1185 299 298 0 0 chr15 91226296 91226390 -10154131 + A-rich Low_complexity Low_complexity 1 94 0 231 125 0 0 chr15 91226438 91226478 -10154043 + (A)n Simple_repeat Simple_repeat 1 40 0 46 19 0 0 chr15 91226478 91226531 -10153990 + AT_rich Low_complexity Low_complexity 1 53 0 213 237 31 52 chr15 91226698 91226795 -10153726 - MIR SINE MIR -39 223 129 2587 207 50 23 chr15 91227412 91227988 -10152533 - MLT1E LTR MaLR 0 593 2 2194 88 53 0 chr15 91228470 91228754 -10151767 + AluSp SINE Alu 1 299 -14 5929 194 46 11 chr15 91229162 91230377 -10150144 + Charlie1a DNA MER1_type 1 1258 -197 775 177 0 0 chr15 91230387 91230511 -10150010 - FLAM_C SINE Alu -18 125 2 545 151 111 70 chr15 91230532 91230704 -10149817 + Charlie1a DNA MER1_type 1277 1455 0 399 167 89 22 chr15 91230825 91230915 -10149606 + L1MA3 LINE L1 6200 6295 -10 302 299 68 28 chr15 91230968 91231145 -10149376 - MLT1L LTR MaLR -57 558 375 315 0 0 0 chr15 91231622 91231657 -10148864 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1924 99 33 56 chr15 91231659 91231963 -10148558 - AluSx SINE Alu -13 299 3 303 190 50 33 chr15 91232285 91232304 -10148217 + (TAGA)n Simple_repeat Simple_repeat 2 19 -105 858 113 0 0 chr15 91232304 91232419 -10148102 - FLAM_C SINE Alu -18 115 1 303 190 50 33 chr15 91232419 91232520 -10148001 + (TAGA)n Simple_repeat Simple_repeat 19 124 0 664 204 125 7 chr15 91232582 91232774 -10147747 + MIR SINE MIR 55 260 -2 222 37 0 0 chr15 91233154 91233181 -10147340 + (GTTTG)n Simple_repeat Simple_repeat 1 27 0 1934 132 4 4 chr15 91233181 91233462 -10147059 - AluSx SINE Alu -31 281 1 236 175 53 35 chr15 91233901 91233958 -10146563 - MIR SINE MIR -88 174 117 408 231 39 29 chr15 91235283 91235387 -10145134 + MER81 DNA DNA 5 109 -5 249 241 352 0 chr15 91235506 91235614 -10144907 - MIR SINE MIR 0 262 117 236 155 0 17 chr15 91235711 91235769 -10144752 + GA-rich Low_complexity Low_complexity 2 58 0 2376 101 0 0 chr15 91236586 91236892 -10143629 - AluSx SINE Alu -6 306 1 552 189 27 9 chr15 91237028 91237139 -10143382 + MER81 DNA DNA 2 114 0 257 263 42 32 chr15 91237473 91237568 -10142953 - MIR SINE MIR -78 184 89 605 197 0 7 chr15 91238693 91238835 -10141686 + GA-rich Low_complexity Low_complexity 3 143 0 443 254 42 14 chr15 91239258 91239282 -10141239 + L2 LINE L2 3168 3190 -123 216 0 0 0 chr15 91239282 91239306 -10141215 + (CA)n Simple_repeat Simple_repeat 2 25 0 443 254 42 14 chr15 91239306 91239423 -10141098 + L2 LINE L2 3190 3313 0 618 267 65 24 chr15 91239443 91239690 -10140831 + MIR SINE MIR 5 261 -1 236 304 47 47 chr15 91239717 91239865 -10140656 + L2 LINE L2 2596 2743 -571 456 233 0 19 chr15 91240353 91240456 -10140065 + MER81 DNA DNA 1 101 -13 207 313 0 48 chr15 91240531 91240614 -10139907 + L2 LINE L2 3190 3268 -4 201 233 167 0 chr15 91240640 91240700 -10139821 + MIR SINE MIR 35 104 -158 579 271 61 11 chr15 91240719 91240834 -10139687 + MIR SINE MIR 73 202 -60 2699 30 0 0 chr15 91240834 91241132 -10139389 + AluY SINE Alu 1 298 -13 579 271 61 11 chr15 91241132 91241197 -10139324 + MIR SINE MIR 202 262 0 551 216 92 7 chr15 91241336 91241489 -10139032 + MER5B DNA MER1_type 13 178 0 996 184 6 0 chr15 91241996 91242170 -10138351 - FRAM SINE Alu -10 166 1 2252 171 10 0 chr15 91244355 91244741 -10135780 - MLT1B LTR MaLR 0 390 1 2103 168 63 41 chr15 91244753 91244873 -10135648 + MLT2C2 LTR ERVL 7 123 -341 2392 100 0 7 chr15 91244873 91245183 -10135338 - AluSx SINE Alu -4 308 1 2103 168 63 41 chr15 91245183 91245473 -10135048 + MLT2C2 LTR ERVL 123 426 -38 253 174 0 0 chr15 91245500 91245546 -10134975 - MLT2B1 LTR ERVL -2 518 473 378 300 37 39 chr15 91245586 91245825 -10134696 - L1MC/D LINE L1 -567 5599 5379 2517 198 14 40 chr15 91245847 91245941 -10134580 - MER34 LTR ERV1 -6 536 441 207 0 0 0 chr15 91245941 91245964 -10134557 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2305 84 3 0 chr15 91245966 91246251 -10134270 - AluSp SINE Alu -27 286 1 2517 198 14 40 chr15 91246251 91246648 -10133873 - MER34 LTR ERV1 -102 440 55 2341 98 0 7 chr15 91246648 91246953 -10133568 + AluSg SINE Alu 1 303 -7 2517 198 14 40 chr15 91246953 91247007 -10133514 - MER34 LTR ERV1 -487 55 1 1251 189 186 6 chr15 91247112 91247429 -10133092 + MLT1A2 LTR MaLR 1 374 0 655 276 115 55 chr15 91247975 91248750 -10131771 - L1MC/D LINE L1 -1218 4928 4108 2340 149 58 26 chr15 91248762 91249177 -10131344 - MSTC LTR MaLR 0 428 1 225 333 0 0 chr15 91249440 91249548 -10130973 + (TA)n Simple_repeat Simple_repeat 1 108 0 2385 90 0 0 chr15 91250553 91250863 -10129658 - AluY SINE Alu -1 310 1 279 310 8 0 chr15 91250920 91251049 -10129472 + (TA)n Simple_repeat Simple_repeat 1 130 0 2468 77 0 13 chr15 91252451 91252764 -10127757 + AluSg SINE Alu 1 309 -1 2329 79 3 0 chr15 91253061 91253364 -10127157 - L1PB1 LINE L1 -2 6149 5846 419 268 162 0 chr15 91253370 91253512 -10127009 + MIR SINE MIR 47 211 -51 707 279 122 78 chr15 91253790 91254826 -10125695 + L2 LINE L2 1814 2894 -420 283 322 41 79 chr15 91254859 91255011 -10125510 - L2 LINE L2 -2505 809 653 2069 114 0 39 chr15 91255011 91255317 -10125204 + AluSx SINE Alu 14 307 -5 283 322 41 79 chr15 91255317 91255605 -10124916 - L2 LINE L2 -2661 653 386 3245 204 93 65 chr15 91255974 91257173 -10123348 + L1MC5 LINE L1 6680 7912 -49 254 244 37 24 chr15 91257470 91257552 -10122969 + MIR SINE MIR 174 256 -6 1188 179 138 0 chr15 91258513 91258737 -10121784 + MSTB LTR MaLR 1 255 -171 9325 164 53 5 chr15 91258737 91260308 -10120213 + MLT1A2-int LTR MaLR 5 1651 0 2139 152 103 8 chr15 91260308 91260697 -10119824 + MSTB LTR MaLR 1 426 0 858 156 7 0 chr15 91262081 91262216 -10118305 + FLAM_C SINE Alu 1 136 -7 201 330 23 11 chr15 91262484 91262572 -10117949 + MIR3 SINE MIR 74 162 -46 1164 0 15 0 chr15 91262944 91263076 -10117445 + L1PA2 LINE L1 6022 6155 0 1407 169 24 27 chr15 91263148 91263444 -10117077 + L1 LINE L1 3777 4071 -2075 300 91 0 0 chr15 91263444 91263488 -10117033 + (A)n Simple_repeat Simple_repeat 1 44 0 2270 101 0 3 chr15 91263780 91264078 -10116443 - AluSg1 SINE Alu -12 297 1 239 0 32 0 chr15 91265084 91265115 -10115406 + (TAGA)n Simple_repeat Simple_repeat 3 34 0 370 258 28 17 chr15 91265115 91265138 -10115383 + (TA)n Simple_repeat Simple_repeat 1 22 -158 2317 98 6 13 chr15 91265138 91265453 -10115068 - AluSp SINE Alu 0 313 1 370 258 28 17 chr15 91265453 91265607 -10114914 + (TA)n Simple_repeat Simple_repeat 22 180 0 525 224 126 0 chr15 91267044 91267187 -10113334 + MER112 DNA MER1_type 94 254 -6 2484 72 0 3 chr15 91267847 91268151 -10112370 + AluY SINE Alu 9 311 0 505 106 407 0 chr15 91268152 91268265 -10112256 - MER34C LTR ERV1 -272 313 155 379 232 6 125 chr15 91268265 91268337 -10112184 - MER57A-int LTR ERV1 -4135 988 946 1385 235 3 0 chr15 91268337 91268639 -10111882 - AluSc SINE Alu -6 303 1 379 232 6 125 chr15 91268639 91268734 -10111787 - MER57A-int LTR ERV1 -4177 946 841 489 123 12 12 chr15 91268851 91268932 -10111589 - MER57A-int LTR ERV1 -6700 837 757 853 151 0 8 chr15 91268943 91269069 -10111452 + FLAM_C SINE Alu 1 125 -18 21 0 0 0 chr15 91269075 91269096 -10111425 + AT_rich Low_complexity Low_complexity 1 21 0 3965 178 13 37 chr15 91269114 91269874 -10110647 - MER57A-int LTR ERV1 -6795 742 1 3646 107 29 0 chr15 91269891 91270406 -10110115 - L1P LINE L1 -5085 1061 532 8471 49 0 0 chr15 91270406 91272225 -10108296 + L1PA5 LINE L1 4338 6154 0 2034 177 12 48 chr15 91272234 91272647 -10107874 - MER57A LTR ERV1 -4 399 2 1672 176 72 0 chr15 91272822 91273101 -10107420 + AluJo SINE Alu 1 299 -13 838 234 11 0 chr15 91273256 91273444 -10107077 - MIR SINE MIR -36 226 37 297 250 102 39 chr15 91273551 91273679 -10106842 - L2 LINE L2 0 3272 3137 856 323 40 6 chr15 91274118 91274465 -10106056 - L1MC4a LINE L1 -1961 5847 5489 232 138 138 15 chr15 91274796 91274861 -10105660 + MIR SINE MIR 69 141 -121 981 280 23 13 chr15 91275039 91275343 -10105178 + LTR16C LTR ERVL 185 491 0 1517 158 16 33 chr15 91275701 91275838 -10104683 - L1MB3 LINE L1 0 6183 6045 2086 155 0 0 chr15 91275838 91276142 -10104379 - AluSx SINE Alu -8 304 1 1517 158 16 33 chr15 91276142 91276307 -10104214 - L1MB3 LINE L1 -138 6045 5886 276 170 64 0 chr15 91276426 91276473 -10104048 + LTR16C LTR ERVL 442 491 0 184 279 0 0 chr15 91277376 91277419 -10103102 + MIR3 SINE MIR 157 199 -9 1704 174 0 16 chr15 91278262 91278566 -10101955 - AluJo SINE Alu -13 299 1 258 224 37 84 chr15 91278811 91278918 -10101603 + L2 LINE L2 2370 2471 -843 316 272 24 119 chr15 91279172 91279584 -10100937 + L2 LINE L2 2687 3054 -218 237 308 32 32 chr15 91280822 91280978 -10099543 - MIR SINE MIR -12 250 95 4016 122 154 22 chr15 91281009 91281736 -10098785 - LTR12 LTR ERV1 0 826 4 1406 160 34 49 chr15 91281756 91282307 -10098214 - pTR5 LTR ERV1 -1124 1314 733 180 0 0 0 chr15 91283638 91283658 -10096863 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1069 185 162 71 chr15 91283670 91284010 -10096511 + L1MB3 LINE L1 5415 5785 -398 2567 97 5 35 chr15 91284014 91284360 -10096161 + L1PB2 LINE L1 5762 6096 -55 2163 115 0 0 chr15 91284360 91284655 -10095866 + AluSx SINE Alu 1 295 -17 2567 97 5 35 chr15 91284655 91284709 -10095812 + L1PB2 LINE L1 6096 6150 -1 1245 199 81 60 chr15 91284759 91284773 -10095748 + L1MB3 LINE L1 5772 5784 -399 279 0 0 0 chr15 91284773 91284804 -10095717 + (CA)n Simple_repeat Simple_repeat 2 32 0 1245 199 81 60 chr15 91284804 91285186 -10095335 + L1MB3 LINE L1 5784 6176 -7 608 158 0 0 chr15 91286831 91286932 -10093589 + FRAM SINE Alu 67 167 -9 261 83 0 0 chr15 91286951 91286987 -10093534 + (A)n Simple_repeat Simple_repeat 1 36 0 188 154 26 0 chr15 91287226 91287265 -10093256 + L2 LINE L2 3214 3253 -19 395 272 109 0 chr15 91287364 91287511 -10093010 - MIR SINE MIR 0 262 100 832 261 121 31 chr15 91287511 91287924 -10092597 - MLT1J2 LTR MaLR 0 450 1 310 350 10 0 chr15 91287927 91288027 -10092494 - MIR SINE MIR -161 101 1 1340 240 111 28 chr15 91288039 91288497 -10092024 + MLT1G LTR MaLR 1 496 -94 2166 96 0 0 chr15 91288640 91288935 -10091586 + AluSq SINE Alu 14 308 0 2310 112 0 0 chr15 91289422 91289726 -10090795 - AluSx SINE Alu -8 304 1 499 280 133 32 chr15 91290494 91290817 -10089704 - L2 LINE L2 -83 3230 2941 1980 144 16 45 chr15 91290817 91291193 -10089328 + MLT1A1 LTR MaLR 1 365 0 499 280 133 32 chr15 91291193 91291330 -10089191 - L2 LINE L2 -372 2941 2644 2069 143 135 5 chr15 91291336 91291715 -10088806 - MSTA LTR MaLR 0 428 1 1913 120 36 4 chr15 91291753 91292049 -10088472 + AluSx SINE Alu 1 305 0 817 303 31 79 chr15 91292063 91292605 -10087916 + L1ME LINE L1 894 1409 -5538 2083 131 13 7 chr15 91292707 91293013 -10087508 - AluSx SINE Alu -2 310 3 180 0 0 0 chr15 91293017 91293037 -10087484 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1382 112 0 5 chr15 91293043 91293248 -10087273 - L1PB1 LINE L1 -1 6150 5947 2819 207 9 12 chr15 91293269 91293921 -10086600 - L1 LINE L1 -1016 5130 4481 488 242 26 78 chr15 91294148 91294317 -10086204 + L1ME LINE L1 1355 1531 -5416 2105 126 3 0 chr15 91294317 91294610 -10085911 + AluSx SINE Alu 1 294 -18 488 242 26 78 chr15 91294610 91294855 -10085666 + L1ME LINE L1 1531 1852 -5095 314 206 68 0 chr15 91294922 91294995 -10085526 - LTR33 LTR ERVL -152 369 292 311 281 141 8 chr15 91294999 91295127 -10085394 - LTR33 LTR ERVL -333 188 44 325 332 44 22 chr15 91295202 91295518 -10085003 + HAL1b LINE L1 349 671 -677 34 24 0 0 chr15 91295529 91295570 -10084951 + AT_rich Low_complexity Low_complexity 1 41 0 326 218 36 79 chr15 91296205 91296370 -10084151 + L1ME4a LINE L1 5964 6121 0 517 195 25 17 chr15 91296382 91296500 -10084021 + L1MA10 LINE L1 6216 6334 0 313 267 65 51 chr15 91296530 91296747 -10083774 + L1MC5 LINE L1 7357 7576 -385 225 94 0 0 chr15 91297064 91297096 -10083425 + (A)n Simple_repeat Simple_repeat 1 32 0 1250 246 31 8 chr15 91297215 91297568 -10082953 - MER57B LTR ERV1 0 434 74 2313 98 3 0 chr15 91297572 91297869 -10082652 - AluSq SINE Alu -15 298 1 198 0 0 0 chr15 91297881 91297903 -10082618 + (T)n Simple_repeat Simple_repeat 1 22 0 887 146 0 0 chr15 91298293 91298423 -10082098 - FLAM_C SINE Alu -1 132 3 2122 133 0 3 chr15 91298453 91298753 -10081768 - AluSx SINE Alu -13 299 1 289 212 81 20 chr15 91299181 91299280 -10081241 - HAL1 LINE L1 -171 2336 2232 1482 215 70 45 chr15 91299284 91299730 -10080791 + MLT1C LTR MaLR 6 462 -5 2328 84 3 7 chr15 91299794 91300093 -10080428 - AluSx SINE Alu -14 298 1 917 112 0 0 chr15 91300205 91300330 -10080191 + AluSq/x SINE Alu 3 127 -185 1385 144 0 31 chr15 91300330 91300552 -10079969 + AluSg/x SINE Alu 70 284 -26 2240 114 0 0 chr15 91300971 91301268 -10079253 - AluSx SINE Alu -15 297 1 22 0 0 0 chr15 91301484 91301506 -10079015 + AT_rich Low_complexity Low_complexity 1 22 0 1186 103 0 0 chr15 91301668 91301824 -10078697 - L1PA10 LINE L1 -10 6158 6003 1441 176 3 86 chr15 91301889 91302027 -10078494 + AluJo SINE Alu 1 102 -210 2400 95 0 0 chr15 91302027 91302323 -10078198 - AluSx SINE Alu -16 296 1 1441 176 3 86 chr15 91302323 91302486 -10078035 + AluJo SINE Alu 102 277 -35 2213 106 88 15 chr15 91303436 91303775 -10076746 + THE1B LTR MaLR 1 364 0 1545 211 14 0 chr15 91303923 91304045 -10076476 + AluJb SINE Alu 1 120 -192 279 0 0 0 chr15 91304045 91304076 -10076445 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1545 211 14 0 chr15 91304076 91304238 -10076283 + AluJb SINE Alu 120 289 -23 2150 125 3 10 chr15 91304268 91304579 -10075942 + AluSg SINE Alu 2 310 0 463 293 48 93 chr15 91305101 91305198 -10075323 + MER110-int LTR ERV1 131 231 -4416 1977 156 0 0 chr15 91305198 91305493 -10075028 + AluSx SINE Alu 1 295 -17 463 293 48 93 chr15 91305493 91305835 -10074686 + MER110-int LTR ERV1 231 550 -4097 768 195 0 8 chr15 91305860 91305988 -10074533 - FLAM_C SINE Alu -14 129 3 2270 110 0 16 chr15 91306053 91306363 -10074158 + AluSx SINE Alu 1 305 -7 788 71 0 0 chr15 91306366 91306464 -10074057 + L1P LINE L1 1 98 -6048 * 22643 62 2 5 chr15 91306462 91309376 -10071145 + L1P LINE L1 623 3530 -2616 4536 224 32 49 chr15 91309477 91309536 -10070985 - L1M4 LINE L1 -2231 3915 3857 180 0 0 0 chr15 91309536 91309556 -10070965 + (TTG)n Simple_repeat Simple_repeat 1 20 0 2353 58 0 34 chr15 91309556 91309845 -10070676 - AluY SINE Alu -32 279 1 4536 224 32 49 chr15 91309845 91310568 -10069953 - L1M4 LINE L1 -2288 3858 3124 1941 146 23 7 chr15 91310568 91310869 -10069652 - AluJb SINE Alu -6 306 1 4536 224 32 49 chr15 91310869 91310977 -10069544 - L1M4 LINE L1 -3022 3124 3016 2513 64 0 10 chr15 91310977 91311289 -10069232 - AluY SINE Alu -2 309 1 4536 224 32 49 chr15 91311289 91311388 -10069133 - L1M4 LINE L1 -3130 3016 2917 6327 48 5 5 chr15 91311388 91312156 -10068365 + L1PA6 LINE L1 5382 6149 -5 243 0 0 0 chr15 91312156 91312183 -10068338 + (TA)n Simple_repeat Simple_repeat 2 28 0 4536 224 32 49 chr15 91312183 91312706 -10067815 - L1M4 LINE L1 -3227 2919 2430 2053 144 0 26 chr15 91312714 91313020 -10067501 - AluJb SINE Alu -14 298 1 291 257 20 61 chr15 91313266 91313414 -10067107 + HAL1b LINE L1 746 887 -461 3179 154 88 36 chr15 91313537 91314205 -10066316 + L1MC3 LINE L1 6368 7070 -715 2273 103 0 16 chr15 91314206 91314517 -10066004 + AluSx SINE Alu 1 306 -6 309 286 10 10 chr15 91314544 91314642 -10065879 + MLT1F1 LTR MaLR 24 121 -446 * 352 143 18 0 chr15 91314634 91314690 -10065831 + AluSg/x SINE Alu 187 243 -57 500 278 68 11 chr15 91314701 91314892 -10065629 - MIR SINE MIR -7 255 54 1925 157 3 3 chr15 91314906 91315211 -10065310 + AluSx SINE Alu 1 305 -7 230 197 14 84 chr15 91316172 91316243 -10064278 + MIR SINE MIR 118 183 -79 1175 251 86 52 chr15 91316295 91316591 -10063930 - MLT1H1 LTR MaLR 0 555 270 2401 84 0 0 chr15 91316591 91316890 -10063631 - AluY SINE Alu -12 299 1 1175 251 86 52 chr15 91316890 91317071 -10063450 - MLT1H1 LTR MaLR -285 270 56 1713 193 3 3 chr15 91317071 91317372 -10063149 - AluJo SINE Alu -11 301 1 1175 251 86 52 chr15 91317372 91317426 -10063095 - MLT1H1 LTR MaLR -499 56 5 735 297 12 59 chr15 91317738 91317925 -10062596 - MER110 LTR ERV1 0 491 326 2210 101 11 0 chr15 91317925 91318212 -10062309 + AluSx SINE Alu 1 290 -22 735 297 12 59 chr15 91318212 91318361 -10062160 - MER110 LTR ERV1 -165 326 171 231 221 35 81 chr15 91318434 91318520 -10062001 - MER110A LTR ERV1 -292 176 95 2132 102 11 0 chr15 91318657 91318942 -10061579 - AluSg SINE Alu -22 288 1 404 264 38 0 chr15 91319159 91319265 -10061256 - MIR SINE MIR 0 262 153 916 215 110 19 chr15 91319655 91319864 -10060657 + LTR16A LTR ERVL 223 450 0 237 33 0 0 chr15 91319902 91319932 -10060589 + (TG)n Simple_repeat Simple_repeat 1 30 0 2152 100 7 0 chr15 91319932 91320212 -10060309 - AluSq SINE Alu -31 282 1 2473 83 0 3 chr15 91320306 91320618 -10059903 + AluY SINE Alu 1 311 0 2462 242 97 23 chr15 91320634 91320936 -10059585 + L1M4 LINE L1 4011 4289 -1857 1477 186 0 4 chr15 91320936 91321199 -10059322 - AluJb SINE Alu -15 297 36 2462 242 97 23 chr15 91321199 91321508 -10059013 + L1M4 LINE L1 4289 4574 -1572 2212 97 3 3 chr15 91321508 91321797 -10058724 + AluSp SINE Alu 1 289 -24 2462 242 97 23 chr15 91321797 91322353 -10058168 + L1M4 LINE L1 4574 5332 -814 2212 111 0 3 chr15 91322354 91322643 -10057878 + AluSp SINE Alu 1 288 -25 2227 106 3 0 chr15 91322676 91322969 -10057552 + AluSp SINE Alu 1 294 -19 1048 135 0 13 chr15 91322979 91323174 -10057347 + AluSg/x SINE Alu 136 312 0 5610 112 18 8 chr15 91323174 91323621 -10056900 + L1PA16 LINE L1 5323 5783 -383 2307 110 0 3 chr15 91323621 91323929 -10056592 + AluSp SINE Alu 1 307 -6 5610 112 18 8 chr15 91323929 91324312 -10056209 + L1PA16 LINE L1 5783 6161 -5 2286 89 3 7 chr15 91324380 91324671 -10055850 + AluSq SINE Alu 1 290 -23 1078 91 7 7 chr15 91324690 91324833 -10055688 + AluSp SINE Alu 1 143 -170 33 0 0 0 chr15 91324855 91324888 -10055633 + AT_rich Low_complexity Low_complexity 1 33 0 483 55 68 0 chr15 91324895 91324968 -10055553 + L1PA15 LINE L1 6086 6163 -2 280 146 0 0 chr15 91324991 91325032 -10055489 - L1P4 LINE L1 -296 5870 5830 520 240 52 13 chr15 91325040 91325194 -10055327 + L1MB5 LINE L1 4963 5122 -1024 2042 190 30 28 chr15 91325196 91325288 -10055233 + L1MB5 LINE L1 5736 5826 -348 2205 117 0 0 chr15 91325288 91325586 -10054935 + AluSq SINE Alu 1 298 -15 2042 190 30 28 chr15 91325586 91325925 -10054596 + L1MB5 LINE L1 5826 6168 -6 262 258 0 32 chr15 91326502 91326595 -10053926 + C-rich Low_complexity Low_complexity 2 91 0 382 303 7 41 chr15 91327050 91327119 -10053402 + L3 LINE CR1 1404 1467 -110 2417 80 0 3 chr15 91327119 91327421 -10053100 + AluY SINE Alu 1 301 -10 382 303 7 41 chr15 91327421 91327496 -10053025 + L3 LINE CR1 1467 1543 -34 252 292 139 42 chr15 91327608 91327641 -10052880 - MIR SINE MIR -87 175 147 1433 190 25 101 chr15 91327641 91328036 -10052485 - MLT1A1 LTR MaLR 0 365 1 252 292 139 42 chr15 91328036 91328146 -10052375 - MIR SINE MIR -115 147 18 306 326 89 37 chr15 91328221 91328411 -10052110 + MIR3 SINE MIR 2 201 -7 222 190 35 0 chr15 91328634 91328692 -10051829 + A-rich Low_complexity Low_complexity 5 64 0 2228 116 7 0 chr15 91328718 91329020 -10051501 + AluSx SINE Alu 1 304 -8 1970 163 64 11 chr15 91379218 91379575 -10000946 - MSTA LTR MaLR -52 376 1 297 0 0 0 chr15 91379587 91379620 -10000901 + (TC)n Simple_repeat Simple_repeat 2 34 0 248 254 49 84 chr15 91379910 91380097 -10000424 - MIR SINE MIR -55 207 20 534 185 237 0 chr15 91380115 91380250 -10000271 - MER96B DNA MER1_type? 0 417 251 2324 100 0 0 chr15 91380251 91380561 -9999960 - AluSg SINE Alu 0 310 1 1852 141 0 10 chr15 91380570 91380861 -9999660 - AluJb SINE Alu -24 288 1 2390 40 40 10 chr15 91380911 91381207 -9999314 - AluY SINE Alu -6 305 1 1309 158 22 87 chr15 91381361 91381684 -9998837 - AluJo SINE Alu -10 302 1 180 300 22 22 chr15 91381722 91381812 -9998709 - MIR SINE MIR -172 90 1 21 0 0 0 chr15 91383162 91383183 -9997338 + AT_rich Low_complexity Low_complexity 1 21 0 2262 120 0 13 chr15 91383362 91383541 -9996980 - AluSx SINE Alu 0 312 137 2344 91 0 3 chr15 91383541 91383838 -9996683 - AluSc SINE Alu -13 296 1 2262 120 0 13 chr15 91383838 91383974 -9996547 - AluSx SINE Alu -175 137 1 1307 231 53 24 chr15 91383995 91384371 -9996150 - L1ME1 LINE L1 -4 6162 5776 823 189 133 5 chr15 91384372 91384568 -9995953 - L1ME1 LINE L1 -516 5650 5430 2004 123 30 0 chr15 91384569 91384870 -9995651 - AluSx SINE Alu -2 310 1 845 278 28 4 chr15 91384876 91385128 -9995393 - L1MEc LINE L1 -6011 385 128 2163 123 7 0 chr15 91385132 91385441 -9995080 - AluSx SINE Alu -1 311 1 2103 141 3 3 chr15 91385455 91385767 -9994754 - AluSx SINE Alu 0 312 1 1923 152 16 52 chr15 91385769 91386078 -9994443 - L1MB1 LINE L1 -217 5972 5653 2098 89 52 7 chr15 91386078 91386369 -9994152 - AluSp SINE Alu -9 304 1 2335 96 0 3 chr15 91386376 91386678 -9993843 - AluSx SINE Alu -11 301 1 1923 152 16 52 chr15 91386678 91386741 -9993780 - L1MB1 LINE L1 -542 5647 5606 872 174 70 6 chr15 91386741 91386913 -9993608 - AluJ SINE Alu -9 303 121 492 161 37 0 chr15 91386945 91387026 -9993495 - AluJ SINE Alu -178 134 51 2232 97 0 3 chr15 91387268 91387566 -9992955 + AluY SINE Alu 9 305 -6 1531 136 101 0 chr15 91387897 91388154 -9992367 + AluSx SINE Alu 1 283 -29 524 129 0 43 chr15 91388225 91388318 -9992203 - AluJ/FRAM SINE Alu -3 309 221 2396 201 87 101 chr15 91388661 91388961 -9991560 - L1M4 LINE L1 -2801 3345 3042 2224 101 0 28 chr15 91388961 91389279 -9991242 - AluSg SINE Alu -1 309 1 2396 201 87 101 chr15 91389279 91389290 -9991231 - L1M4 LINE L1 -3104 3042 3032 2153 130 0 13 chr15 91389290 91389598 -9990923 - AluSx SINE Alu -8 304 1 2396 201 87 101 chr15 91389598 91389691 -9990830 - L1M4 LINE L1 -3114 3032 2939 894 181 0 0 chr15 91389691 91389824 -9990697 - FLAM_C SINE Alu 0 133 1 2396 201 87 101 chr15 91389824 91390239 -9990282 - L1M4 LINE L1 -3207 2939 2520 2254 86 10 0 chr15 91390239 91390530 -9989991 + AluY SINE Alu 3 296 -15 2396 201 87 101 chr15 91390530 91390543 -9989978 - L1M4 LINE L1 -3626 2520 2508 2173 112 0 10 chr15 91390543 91390867 -9989654 + AluSx SINE Alu 1 312 0 2396 201 87 101 chr15 91390867 91391024 -9989497 - L1M4 LINE L1 -3638 2508 2366 1096 217 0 0 chr15 91391025 91391223 -9989298 + MSTB LTR MaLR 1 198 -228 961 116 0 0 chr15 91391225 91391354 -9989167 + AluSg/x SINE Alu 83 211 -99 2057 94 8 0 chr15 91391402 91391667 -9988854 + AluSp SINE Alu 1 267 -46 679 126 0 0 chr15 91391767 91391862 -9988659 + AluSp/q SINE Alu 204 298 -15 433 159 48 103 chr15 91391862 91391912 -9988609 - L1 LINE L1 -832 5314 5263 1869 168 7 0 chr15 91391912 91392216 -9988305 - AluSx SINE Alu 0 306 1 433 159 48 103 chr15 91392216 91392290 -9988231 - L1 LINE L1 -883 5263 5196 237 132 0 0 chr15 91392290 91392328 -9988193 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 1376 167 16 32 chr15 91392331 91392583 -9987938 - AluSx SINE Alu -20 292 45 1129 97 0 0 chr15 91392583 91392727 -9987794 + AluSg/x SINE Alu 140 283 -29 403 328 48 28 chr15 91392753 91393003 -9987518 - LTR16C LTR ERVL 0 491 237 423 298 47 12 chr15 91393204 91393375 -9987146 - HAL1 LINE L1 -1681 826 650 1094 132 12 0 chr15 91393376 91393543 -9986978 + AluSg/x SINE Alu 135 303 -7 1273 204 204 62 chr15 91393688 91394125 -9986396 - HAL1 LINE L1 -2005 502 4 317 265 10 39 chr15 91394129 91394231 -9986290 + L2 LINE L2 2972 3070 -243 1116 139 6 0 chr15 91394269 91394435 -9986086 - AluSg/x SINE Alu -11 301 135 556 237 8 30 chr15 91394439 91394570 -9985951 + L2 LINE L2 3165 3292 -21 1547 152 0 47 chr15 91395354 91395631 -9984890 + AluJo SINE Alu 32 295 -17 21 0 0 0 chr15 91395635 91395656 -9984865 + AT_rich Low_complexity Low_complexity 1 21 0 2156 120 7 7 chr15 91395657 91395956 -9984565 + AluSx SINE Alu 1 299 -13 410 246 118 64 chr15 91396851 91397054 -9983467 + MIR SINE MIR 32 245 -17 274 209 15 30 chr15 91397472 91397539 -9982982 + MIR SINE MIR 38 103 -105 204 239 0 33 chr15 91398794 91398886 -9981635 + (CGGG)n Simple_repeat Simple_repeat 3 91 0 180 77 0 0 chr15 91398896 91398922 -9981599 + (CCG)n Simple_repeat Simple_repeat 3 28 0 309 292 71 106 chr15 91399024 91399391 -9981130 - L1M2 LINE L1 -5676 1173 820 348 244 76 96 chr15 91399426 91399623 -9980898 - L1M2 LINE L1 -5901 948 756 25 31 0 0 chr15 91400310 91400342 -9980179 + AT_rich Low_complexity Low_complexity 1 32 0 1753 102 0 53 chr15 91405360 91405626 -9974895 + AluSx SINE Alu 2 253 -59 2829 10 0 0 chr15 91406294 91406600 -9973921 - AluYb8 SINE Alu -12 306 1 1907 141 13 13 chr15 91406773 91407078 -9973443 - AluSx SINE Alu -7 305 1 791 125 0 0 chr15 91407252 91407356 -9973165 - AluSx SINE Alu -15 295 192 1074 106 0 0 chr15 91407357 91407498 -9973023 - AluSx SINE Alu -172 141 1 572 233 61 25 chr15 91408438 91408601 -9971920 + MER58A DNA MER1_type 48 216 -8 25 31 0 0 chr15 91408707 91408739 -9971782 + AT_rich Low_complexity Low_complexity 1 32 0 2124 128 7 0 chr15 91408918 91409223 -9971298 - AluSx SINE Alu -5 307 1 222 204 0 20 chr15 91409491 91409540 -9970981 + L2 LINE L2 3262 3309 -4 2224 116 0 0 chr15 91409960 91410263 -9970258 - AluSq SINE Alu -10 303 1 2114 114 3 7 chr15 91410742 91411041 -9969480 + AluSg SINE Alu 1 298 -12 680 212 8 23 chr15 91411046 91411178 -9969343 + FLAM_A SINE Alu 1 130 -3 296 238 189 0 chr15 91411709 91411831 -9968690 - MIR SINE MIR 0 262 118 198 0 0 0 chr15 91413207 91413229 -9967292 + (T)n Simple_repeat Simple_repeat 1 22 0 1999 268 70 77 chr15 91419463 91420325 -9960196 + L1ME LINE L1 3 917 -5153 309 150 0 50 chr15 91420325 91420385 -9960136 + Alu SINE Alu 243 299 -2 1999 268 70 77 chr15 91420385 91420556 -9959965 + L1ME LINE L1 917 1088 -4982 242 172 0 36 chr15 91420564 91420626 -9959895 - Alu SINE Alu 0 300 249 314 187 4 0 chr15 91420690 91420749 -9959772 + Alu SINE Alu 1 45 -255 23 0 0 0 chr15 91421736 91421759 -9958762 + GC_rich Low_complexity Low_complexity 1 23 0 204 40 0 0 chr15 91423691 91423716 -9956805 + (TC)n Simple_repeat Simple_repeat 2 26 0 180 0 0 0 chr15 91424112 91424132 -9956389 + (T)n Simple_repeat Simple_repeat 1 20 0 359 305 61 0 chr15 91425087 91425218 -9955303 + MIR SINE MIR 122 260 -2 216 0 0 0 chr15 91425451 91425475 -9955046 + (T)n Simple_repeat Simple_repeat 1 24 0 188 284 0 60 chr15 91425934 91426001 -9954520 + MER5B DNA MER1_type 38 100 -78 1888 141 30 7 chr15 91426284 91426588 -9953933 + AluSx SINE Alu 1 311 -1 252 189 0 0 chr15 91426957 91426994 -9953527 - Alu SINE Alu -265 37 1 919 183 115 11 chr15 91427073 91427264 -9953257 - AluJb SINE Alu -101 211 1 251 193 0 18 chr15 91427337 91427387 -9953134 - MIR SINE MIR -11 251 201 294 95 0 0 chr15 91427387 91427429 -9953092 + (TG)n Simple_repeat Simple_repeat 2 43 0 1259 182 0 9 chr15 91427460 91427680 -9952841 - AluJb SINE Alu -19 293 76 1919 145 0 10 chr15 91427847 91428143 -9952378 - AluSx SINE Alu -19 293 1 1819 154 112 6 chr15 91428245 91428557 -9951964 - MER7A DNA MER2_type 0 346 4 426 262 248 0 chr15 91428697 91428846 -9951675 - MIR SINE MIR -44 218 33 1872 140 11 0 chr15 91428903 91429182 -9951339 + AluSx SINE Alu 1 282 -30 1103 126 0 0 chr15 91429820 91429971 -9950550 - AluSg/x SINE Alu -28 282 132 2043 78 0 72 chr15 91429971 91430297 -9950224 - AluSg SINE Alu 0 310 1 330 331 37 37 chr15 91430487 91430650 -9949871 - MER5A DNA MER1_type -6 183 21 287 245 112 10 chr15 91430690 91430788 -9949733 + MIR SINE MIR 64 171 -91 632 237 74 11 chr15 91430824 91431014 -9949507 + MER20 DNA MER1_type 1 202 -17 1818 164 17 3 chr15 91431021 91431313 -9949208 + AluJo SINE Alu 1 296 -16 1100 133 110 4 chr15 91432158 91432559 -9947962 - LTR54B LTR ERV1 -2 496 1 2381 65 10 0 chr15 91432727 91433018 -9947503 - AluY SINE Alu -17 294 1 320 287 86 49 chr15 91433142 91433171 -9947350 - L1ME2 LINE L1 -295 5869 5843 3634 73 42 70 chr15 91433171 91433788 -9946733 + MER4A LTR ERV1 1 600 0 320 287 86 49 chr15 91433788 91434002 -9946519 - L1ME2 LINE L1 -321 5843 5617 2033 133 0 3 chr15 91434005 91434299 -9946222 - AluSc SINE Alu -16 293 1 346 233 119 67 chr15 91434440 91434633 -9945888 - L1ME2 LINE L1 -762 5384 5182 2239 112 0 6 chr15 91434724 91435037 -9945484 + AluSx SINE Alu 1 311 -1 307 265 0 59 chr15 91436206 91436308 -9944213 - L1MC4 LINE L1 -1333 6709 6614 1981 126 11 0 chr15 91436317 91436603 -9943918 - AluSq SINE Alu -24 289 1 472 78 0 0 chr15 91436614 91436678 -9943843 - Alu SINE Alu -17 293 230 2162 106 7 3 chr15 91436845 91437138 -9943383 - AluY SINE Alu -17 294 1 354 221 107 25 chr15 91437748 91437870 -9942651 + L1ME LINE L1 5660 5791 -330 427 266 87 60 chr15 91439618 91439836 -9940685 + MIR SINE MIR 20 243 -19 251 342 45 27 chr15 91440551 91440662 -9939859 + MER5B DNA MER1_type 64 176 -2 1809 186 7 3 chr15 91440711 91441018 -9939503 - AluJb SINE Alu -4 308 1 2234 109 0 0 chr15 91441020 91441322 -9939199 - AluSc SINE Alu -7 302 1 218 254 149 44 chr15 91441391 91441505 -9939016 + MIR SINE MIR 29 154 -108 2087 133 0 7 chr15 91442258 91442559 -9937962 - AluSx SINE Alu -13 299 1 1655 172 0 4 chr15 91443447 91443714 -9936807 - AluJo SINE Alu -29 283 18 223 309 167 24 chr15 91444233 91444359 -9936162 - MER5B DNA MER1_type -31 147 4 873 218 61 0 chr15 91446045 91446242 -9934279 - MER3 DNA MER1_type 0 209 1 232 292 68 68 chr15 91447330 91447491 -9933030 + MIR SINE MIR 85 245 -17 1471 184 44 11 chr15 91447883 91448175 -9932346 - AluJo SINE Alu 0 301 1 634 218 56 131 chr15 91448727 91448849 -9931672 - L1MC4 LINE L1 -14 8028 7898 1624 166 22 7 chr15 91448849 91449127 -9931394 - AluJo SINE Alu -30 282 1 634 218 56 131 chr15 91449127 91449315 -9931206 - L1MC4 LINE L1 -144 7898 7697 2260 91 0 3 chr15 91449315 91449613 -9930908 - AluSc SINE Alu -12 297 1 634 218 56 131 chr15 91449613 91449744 -9930777 - L1MC4 LINE L1 -345 7697 7628 2524 67 0 3 chr15 91449744 91450071 -9930450 - L1PA5 LINE L1 0 6154 5829 634 218 56 131 chr15 91450071 91450146 -9930375 - L1MC4 LINE L1 -414 7628 7549 1908 119 58 0 chr15 91450215 91450493 -9930028 - AluSx SINE Alu -18 294 1 787 174 68 37 chr15 91450495 91450656 -9929865 - FRAM SINE Alu -11 165 1 334 243 140 0 chr15 91450700 91450807 -9929714 + Charlie8 DNA MER1_type 48 169 -2248 1703 177 10 16 chr15 91451052 91451357 -9929164 - AluJo SINE Alu -9 303 1 246 284 68 11 chr15 91452386 91452474 -9928047 + MIR3 SINE MIR 85 177 -31 2468 67 0 6 chr15 91452474 91452787 -9927734 - AluY SINE Alu 0 311 1 486 200 112 8 chr15 91454172 91454297 -9926224 + MER5A DNA MER1_type 2 139 -50 289 217 24 72 chr15 91454302 91454319 -9926202 + MER5A DNA MER1_type 111 127 -62 1299 200 14 58 chr15 91454319 91454614 -9925907 - AluJo SINE Alu -30 282 1 289 217 24 72 chr15 91454614 91454679 -9925842 + MER5A DNA MER1_type 127 189 0 1594 206 49 5 chr15 91455592 91455960 -9924561 + MER58D DNA MER1_type 3 386 0 318 296 193 22 chr15 91456358 91456716 -9923805 - L1MC4a LINE L1 -1831 5977 5559 356 261 196 7 chr15 91456811 91456949 -9923572 + MER5A DNA MER1_type 26 189 0 287 259 26 52 chr15 91456848 91456964 -9923557 - MER5A DNA MER1_type -76 113 1 * 1695 176 33 10 chr15 91457623 91457924 -9922597 + AluJb SINE Alu 1 308 -4 199 338 38 0 chr15 91458007 91458087 -9922434 - MIR SINE MIR -70 138 56 327 149 28 0 chr15 91458203 91458310 -9922211 + (TA)n Simple_repeat Simple_repeat 1 110 0 332 292 11 0 chr15 91458310 91458399 -9922122 + L1MC4 LINE L1 6613 6702 -1340 333 102 0 0 chr15 91458400 91458459 -9922062 + (TA)n Simple_repeat Simple_repeat 2 60 0 2070 95 28 0 chr15 91458460 91458743 -9921778 - AluSg SINE Alu -19 291 1 186 143 0 0 chr15 91459844 91459879 -9920642 + (T)n Simple_repeat Simple_repeat 1 35 0 350 303 188 18 chr15 91460743 91460908 -9919613 - MIR SINE MIR -64 198 6 2122 248 134 21 chr15 91462076 91462829 -9917692 - L2 LINE L2 -772 2542 1705 2201 105 0 20 chr15 91462832 91463138 -9917383 - AluSx SINE Alu -1 311 12 2135 110 0 4 chr15 91463924 91464237 -9916284 - AluSx SINE Alu 0 314 3 778 176 0 0 chr15 91464268 91464399 -9916122 + FLAM_A SINE Alu 1 131 -2 2324 50 7 27 chr15 91466003 91466301 -9914220 + AluY SINE Alu 1 292 -19 2937 145 37 48 chr15 91467187 91467806 -9912715 - LTR10E LTR ERV1 -21 612 1 1317 177 5 5 chr15 91468009 91468218 -9912303 + AluJb SINE Alu 88 296 -16 217 319 28 14 chr15 91468510 91468582 -9911939 - MIR3 SINE MIR -54 154 82 2276 109 0 13 chr15 91468609 91468922 -9911599 - AluSx SINE Alu -3 309 1 2974 108 57 9 chr15 91469711 91470165 -9910356 - MER1A DNA MER1_type -1 528 53 391 288 93 42 chr15 91471598 91471834 -9908687 - MIR SINE MIR -10 252 5 623 337 140 14 chr15 91474574 91475089 -9905432 + L2 LINE L2 2733 3313 0 24 32 0 0 chr15 91475123 91475154 -9905367 + AT_rich Low_complexity Low_complexity 1 31 0 2325 225 118 3 chr15 91475154 91475882 -9904639 - L1MB7 LINE L1 -54 6199 5388 770 68 86 8 chr15 91475894 91476011 -9904510 - MER85 DNA T2_type -13 126 1 2366 214 60 38 chr15 91476018 91476100 -9904421 - L1MB7 LINE L1 -830 5385 5306 1804 175 31 8 chr15 91476100 91476455 -9904066 + MER47A DNA MER2_type 4 366 0 2366 214 60 38 chr15 91476455 91476937 -9903584 - L1MB7 LINE L1 -909 5306 4793 2192 114 3 7 chr15 91476937 91477243 -9903278 - AluSx SINE Alu -7 305 1 2366 214 60 38 chr15 91477243 91477539 -9902982 - L1MB7 LINE L1 -1422 4793 4505 3563 242 108 41 chr15 91477599 91478157 -9902364 - L1MB7 LINE L1 -1809 4406 3887 2069 135 0 28 chr15 91478157 91478475 -9902046 - AluSx SINE Alu -3 309 1 3563 242 108 41 chr15 91478475 91478857 -9901664 - L1MB7 LINE L1 -2328 3887 3532 1681 168 3 46 chr15 91478857 91479161 -9901360 - AluJo SINE Alu -19 293 3 3563 242 108 41 chr15 91479161 91479323 -9901198 - L1MB7 LINE L1 -2683 3532 3382 2208 95 16 3 chr15 91479323 91479628 -9900893 - AluSq SINE Alu -2 311 3 3563 242 108 41 chr15 91479628 91481109 -9899412 - L1MB7 LINE L1 -2833 3382 1712 21 0 0 0 chr15 91482663 91482684 -9897837 + AT_rich Low_complexity Low_complexity 1 21 0 2318 66 0 30 chr15 91482726 91483027 -9897494 + AluY SINE Alu 2 293 -18 370 250 39 0 chr15 91483060 91483164 -9897357 - MER58B DNA MER1_type -33 308 201 2437 94 7 0 chr15 91483505 91483814 -9896707 - AluSx SINE Alu -1 311 1 2238 105 7 3 chr15 91484175 91484469 -9896052 + AluSx SINE Alu 3 297 -15 1299 72 0 18 chr15 91485171 91485338 -9895183 - AluSp SINE Alu -114 199 36 2007 192 82 75 chr15 91485603 91485785 -9894736 - L1MC5 LINE L1 -398 7563 7384 984 107 0 0 chr15 91485785 91485916 -9894605 + FLAM_C SINE Alu 2 132 -1 2007 192 82 75 chr15 91485916 91486581 -9893940 - L1MC5 LINE L1 -577 7384 6710 279 203 14 0 chr15 91486591 91486665 -9893856 - MER45R DNA AcHobo -104 1477 1403 261 200 33 0 chr15 91486739 91486799 -9893722 + MLT1K LTR MaLR 525 586 -2 273 167 0 0 chr15 91487095 91487149 -9893372 - L1MC5 LINE L1 -1239 6722 6669 646 93 0 0 chr15 91487352 91487438 -9893083 - AluSg/x SINE Alu -8 302 217 25 21 0 43 chr15 91487742 91487757 -9892764 + AT_rich Low_complexity Low_complexity 1 15 -30 2168 100 3 3 chr15 91487757 91488046 -9892475 - AluSp SINE Alu -24 289 1 25 21 0 43 chr15 91488046 91488077 -9892444 + AT_rich Low_complexity Low_complexity 15 45 0 656 241 82 31 chr15 91488079 91488373 -9892148 - L1MC5 LINE L1 -1812 5996 5688 952 172 121 28 chr15 91488710 91488925 -9891596 - MER46A DNA MER2_type 0 236 2 227 206 21 21 chr15 91488947 91489044 -9891477 + (TATATG)n Simple_repeat Simple_repeat 5 101 0 2818 3 0 0 chr15 91490114 91490417 -9890104 + AluYa5 SINE Alu 1 303 -8 180 250 62 0 chr15 91491565 91491613 -9888908 + MIR SINE MIR 96 146 -62 25 0 0 0 chr15 91491953 91491978 -9888543 + AT_rich Low_complexity Low_complexity 1 25 0 188 206 0 0 chr15 91493250 91493284 -9887237 - MER5B DNA MER1_type -36 142 109 489 284 13 13 chr15 91493486 91493641 -9886880 + MIR SINE MIR 108 262 0 238 255 202 24 chr15 91493870 91494073 -9886448 - L1ME4a LINE L1 -17 6104 5848 853 93 7 57 chr15 91494073 91494213 -9886308 + FLAM_C SINE Alu 1 133 0 238 255 202 24 chr15 91494213 91494256 -9886265 - L1ME4a LINE L1 -273 5848 5814 1310 152 10 0 chr15 91494260 91494458 -9886063 + AluJo SINE Alu 98 297 -15 1061 88 0 0 chr15 91497310 91497446 -9883075 + AluY SINE Alu 131 266 -45 258 154 39 0 chr15 91497446 91497524 -9882997 + (TAA)n Simple_repeat Simple_repeat 1 81 0 1826 141 0 54 chr15 91497576 91497901 -9882620 - AluSx SINE Alu 0 312 4 259 247 49 0 chr15 91499045 91499126 -9881395 - MIR SINE MIR 0 262 178 213 320 114 38 chr15 91499498 91499814 -9880707 - L2 LINE L2 -1496 1818 1479 1295 192 133 30 chr15 91500412 91500750 -9879771 - MLT1A2 LTR MaLR -1 373 1 195 302 0 0 chr15 91500798 91500851 -9879670 - MIR SINE MIR 0 262 210 23 78 0 0 chr15 91501522 91501573 -9878948 + AT_rich Low_complexity Low_complexity 1 51 0 187 276 155 43 chr15 91502475 91502591 -9877930 - MIR SINE MIR -50 212 84 544 225 152 0 chr15 91502608 91502759 -9877762 - MIR SINE MIR 0 262 89 21 0 0 0 chr15 91503903 91503924 -9876597 + AT_rich Low_complexity Low_complexity 1 21 0 724 204 103 68 chr15 91504165 91504283 -9876238 - L1M4 LINE L1 -3451 3193 3081 1434 163 31 71 chr15 91504283 91504577 -9875944 - AluJo SINE Alu -30 282 1 724 204 103 68 chr15 91504577 91504826 -9875695 - L1M4 LINE L1 -3563 3081 2813 1828 147 6 32 chr15 91504857 91505171 -9875350 + AluSx SINE Alu 1 306 -6 23 0 0 0 chr15 91505180 91505203 -9875318 + AT_rich Low_complexity Low_complexity 1 23 0 795 246 197 23 chr15 91505203 91505624 -9874897 - L1M4 LINE L1 -3952 2694 2348 2052 125 3 13 chr15 91505624 91505927 -9874594 - AluSq SINE Alu -13 300 1 795 246 197 23 chr15 91505927 91506189 -9874332 - L1M4 LINE L1 -4298 2348 1892 * 2360 208 37 57 chr15 91506185 91506567 -9873954 - L1M4 LINE L1 -5074 1468 1109 2527 78 0 0 chr15 91506567 91506873 -9873648 - AluSq SINE Alu -7 306 1 2360 208 37 57 chr15 91506873 91507278 -9873243 - L1M4 LINE L1 -5433 1109 697 1479 245 64 45 chr15 91507466 91508045 -9872476 - L1M4 LINE L1 -5938 604 15 1697 136 0 96 chr15 91511202 91511547 -9868974 + AluJb SINE Alu 1 312 0 549 279 90 25 chr15 91511660 91511861 -9868660 + MIR SINE MIR 14 227 -35 44 80 0 0 chr15 91511904 91512004 -9868517 + AT_rich Low_complexity Low_complexity 1 100 0 271 217 60 0 chr15 91512382 91512465 -9868056 - L1MC5 LINE L1 -536 7425 7338 1399 260 170 33 chr15 91512660 91513579 -9866942 - L1MC4a LINE L1 -1451 6357 5313 2359 87 0 3 chr15 91513698 91513998 -9866523 - AluY SINE Alu -9 302 4 2543 61 3 3 chr15 91516343 91516654 -9863867 + AluY SINE Alu 1 311 0 2034 123 0 23 chr15 91517518 91517820 -9862701 + AluSx SINE Alu 6 300 -12 2131 127 0 3 chr15 91518392 91518706 -9861815 - AluSq SINE Alu 0 313 1 290 196 4 0 chr15 91518759 91518824 -9861697 - Charlie8 DNA MER1_type -2141 276 209 2021 143 0 0 chr15 91519066 91519353 -9861168 - AluSx SINE Alu -25 287 1 452 252 84 0 chr15 91519388 91519519 -9861002 + MIR SINE MIR 71 212 -50 267 278 17 43 chr15 91519739 91519854 -9860667 + GA-rich Low_complexity Low_complexity 1 112 0 26 0 0 0 chr15 91520478 91520504 -9860017 + AT_rich Low_complexity Low_complexity 1 26 0 1157 173 0 40 chr15 91520617 91520842 -9859679 + AluJo SINE Alu 86 301 -11 26 50 0 0 chr15 91520990 91521030 -9859491 + AT_rich Low_complexity Low_complexity 1 40 0 2230 114 0 0 chr15 91521380 91521679 -9858842 + AluSg SINE Alu 1 299 -11 350 358 85 64 chr15 91522572 91522902 -9857619 - L2 LINE L2 -5 3267 2931 206 208 0 19 chr15 91523623 91523661 -9856860 + CT-rich Low_complexity Low_complexity 2 40 -13 2306 107 0 0 chr15 91523661 91523961 -9856560 - AluSg SINE Alu -10 300 1 206 208 0 19 chr15 91523961 91523975 -9856546 + CT-rich Low_complexity Low_complexity 40 53 0 595 266 111 0 chr15 91524082 91524281 -9856240 - MIR SINE MIR -35 227 7 266 297 72 39 chr15 91524356 91524723 -9855798 - L1ME LINE L1 -276 5894 5514 418 204 156 36 chr15 91525155 91525380 -9855141 - HAL1 LINE L1 -1139 1368 1117 1216 268 126 39 chr15 91525440 91526264 -9854257 - HAL1 LINE L1 -1611 896 1 282 302 95 56 chr15 91526369 91526548 -9853973 - MIR SINE MIR -70 192 7 3115 96 113 0 chr15 91527428 91527899 -9852622 - L1PB1 LINE L1 -7 6144 5621 2108 103 13 35 chr15 91527947 91528258 -9852263 - AluSx SINE Alu -8 304 1 717 167 72 7 chr15 91529724 91529862 -9850659 + MER6 DNA MER2_type -2 865 0 375 296 15 74 chr15 91530700 91530835 -9849686 + L2 LINE L2 3175 3301 -12 315 337 83 6 chr15 91531146 91531330 -9849191 + L1MC4a LINE L1 5528 5490 -631 1899 155 20 0 chr15 91531330 91531634 -9848887 + AluSx SINE Alu 1 310 -2 315 337 83 6 chr15 91531634 91531763 -9848758 + L1MC4a LINE L1 5489 5607 -514 377 317 32 48 chr15 91531765 91531951 -9848570 + L1ME4a LINE L1 5932 6114 -7 2114 133 0 0 chr15 91532755 91533056 -9847465 - AluSx SINE Alu -11 301 1 4514 159 13 5 chr15 91533211 91534265 -9846256 + L1MA8 LINE L1 5166 6287 -4 1116 170 60 0 chr15 91534271 91534471 -9846050 + AluJb SINE Alu 86 297 -15 320 228 69 53 chr15 91534572 91534761 -9845760 + L1MC/D LINE L1 5318 5509 -2299 1986 99 3 78 chr15 91535001 91535323 -9845198 - AluSx SINE Alu -14 298 1 1397 198 63 51 chr15 91536201 91536611 -9843910 - MLT1C LTR MaLR 0 467 53 319 203 0 0 chr15 91537246 91537305 -9843216 + U6 snRNA snRNA 1 59 -48 2088 122 3 0 chr15 91537328 91537624 -9842897 + AluSq SINE Alu 1 297 -16 3892 257 103 11 chr15 91538772 91539773 -9840748 - L1MEc LINE L1 -4704 1692 503 2285 141 112 0 chr15 91539773 91540156 -9840365 - MSTB LTR MaLR 0 426 1 3892 257 103 11 chr15 91540156 91540662 -9839859 - L1MEc LINE L1 -5893 503 45 3824 168 53 24 chr15 91540690 91541572 -9838949 - L1MB5 LINE L1 0 6174 5267 202 292 0 0 chr15 91547830 91547878 -9832643 - L2 LINE L2 -107 3165 3118 239 357 23 35 chr15 91547910 91548081 -9832440 - L2 LINE L2 -27 3286 3118 228 345 48 0 chr15 91548218 91548302 -9832219 + MIR SINE MIR 38 125 -137 2691 173 328 69 chr15 91549312 91550588 -9829933 + pTR5 LTR ERV1 743 2606 0 316 331 76 7 chr15 91551236 91551381 -9829140 + MIR SINE MIR 16 170 -92 2136 115 3 10 chr15 91551849 91552163 -9828358 - AluSx SINE Alu 0 312 1 536 254 54 43 chr15 91552755 91552940 -9827581 - MIR SINE MIR -6 256 70 1120 219 122 47 chr15 91552947 91553391 -9827130 - MER31A LTR ERV1 -8 477 1 309 333 15 22 chr15 91553775 91553910 -9826611 + L2 LINE L2 3180 3313 0 284 358 71 3 chr15 91554458 91554588 -9825933 + MIR SINE MIR 65 200 -19 462 332 100 9 chr15 91554776 91554996 -9825525 - MIR SINE MIR -3 259 20 2322 65 0 23 chr15 91556230 91556537 -9823984 - AluY SINE Alu -11 300 1 1598 176 20 18 chr15 91556542 91556882 -9823639 + MLT2A2 LTR ERVL 6 309 -144 645 333 124 46 chr15 91556885 91557051 -9823470 + L2 LINE L2 2373 2525 -788 3219 59 0 17 chr15 91557051 91557460 -9823061 - L1PA7 LINE L1 -1 6153 5752 645 333 124 46 chr15 91557460 91557591 -9822930 + L2 LINE L2 2525 2644 -669 1783 173 3 3 chr15 91557591 91557891 -9822630 + AluJo SINE Alu 4 303 -9 645 333 124 46 chr15 91557891 91558458 -9822063 + L2 LINE L2 2644 3313 0 370 275 103 52 chr15 91558508 91558725 -9821796 - MIR SINE MIR -33 229 8 2042 96 3 36 chr15 91559541 91559844 -9820677 + AluSc SINE Alu 1 293 -16 549 287 54 6 chr15 91560045 91560212 -9820309 - MIR SINE MIR -30 232 58 248 337 80 23 chr15 91560246 91560421 -9820100 + MIR SINE MIR 6 190 -72 456 285 0 0 chr15 91560819 91560998 -9819523 + (CA)n Simple_repeat Simple_repeat 1 179 0 2075 208 82 23 chr15 91563721 91564196 -9816325 + MLT1D LTR MaLR 1 503 -2 577 289 77 14 chr15 91564622 91564830 -9815691 - MIR SINE MIR -37 225 5 227 291 51 0 chr15 91566043 91566122 -9814399 + ORSL DNA AcHobo 180 262 -13 349 233 0 0 chr15 91566335 91566408 -9814113 + MER116 DNA Mariner 6 78 -2 294 291 209 17 chr15 91566894 91567066 -9813455 - L2 LINE L2 -10 3303 3099 200 180 20 20 chr15 91567084 91567134 -9813387 + MIR SINE MIR 98 147 -115 186 297 16 16 chr15 91567887 91567951 -9812570 + L2 LINE L2 3209 3272 0 307 284 24 63 chr15 91569341 91569468 -9811053 + MIR SINE MIR 27 148 -114 256 305 35 3 chr15 91570608 91570713 -9809808 + MIR SINE MIR 61 172 -36 228 261 58 0 chr15 91571196 91571265 -9809256 + MIR SINE MIR 70 142 -66 2192 106 0 7 chr15 91571630 91571933 -9808588 + AluSx SINE Alu 2 302 -10 2558 116 25 0 chr15 91572037 91572392 -9808129 + THE1B LTR MaLR 1 364 0 189 395 113 0 chr15 91573061 91573256 -9807265 - MIR SINE MIR -24 238 22 302 169 28 14 chr15 91573766 91573837 -9806684 - MER5A DNA MER1_type -109 80 9 314 321 188 6 chr15 91574383 91574548 -9805973 + MIR SINE MIR 23 217 -45 973 217 57 89 chr15 91574925 91575294 -9805227 + MLT1A2 LTR MaLR 2 358 -16 283 284 0 0 chr15 91575990 91576057 -9804464 + MIR SINE MIR 57 123 -139 404 250 169 27 chr15 91576211 91576359 -9804162 - MIR SINE MIR -2 260 92 1853 121 28 3 chr15 91578845 91579134 -9801387 - AluSx SINE Alu -16 296 1 408 239 182 0 chr15 91580239 91580398 -9800123 + LTR50 LTR ERVL 1 188 -607 293 290 47 0 chr15 91580555 91580662 -9799859 + LTR33A LTR ERVL 405 516 -7 1319 112 0 11 chr15 91582665 91582844 -9797677 - AluSg/x SINE Alu -15 295 119 239 364 0 8 chr15 91584200 91584329 -9796192 + (CCG)n Simple_repeat Simple_repeat 2 129 0 980 97 110 0 chr15 91584351 91584496 -9796025 - AluSq SINE Alu -151 162 2 356 226 89 40 chr15 91584537 91584661 -9795860 + MIR SINE MIR 24 153 -109 403 236 56 81 chr15 91584786 91584947 -9795574 + HAL1b LINE L1 1192 1348 0 492 264 0 9 chr15 91585779 91585885 -9794636 + MER81 DNA DNA 9 113 -1 1499 181 73 10 chr15 91586407 91586721 -9793800 + MLT1A1 LTR MaLR 32 365 0 2356 107 0 0 chr15 91586791 91587090 -9793431 - AluSx SINE Alu -13 299 1 986 180 11 11 chr15 91587292 91587481 -9793040 - MER5A DNA MER1_type 0 189 1 25 51 0 0 chr15 91590547 91590586 -9789935 + GC_rich Low_complexity Low_complexity 1 39 0 25 75 0 0 chr15 91590817 91590870 -9789651 + GC_rich Low_complexity Low_complexity 1 53 0 209 180 40 20 chr15 91593291 91593341 -9787180 + MIR SINE MIR 104 154 -108 183 304 190 0 chr15 91594121 91594200 -9786321 - L2 LINE L2 -6 3266 3173 363 299 124 26 chr15 91594293 91594487 -9786034 - MIR SINE MIR 0 262 50 403 259 15 38 chr15 91594940 91595071 -9785450 + MER5B DNA MER1_type 32 159 -19 238 245 0 0 chr15 91595230 91595279 -9785242 + MLT1K LTR MaLR 219 267 -321 1878 140 0 11 chr15 91595416 91595688 -9784833 - AluSx SINE Alu -43 269 1 2128 124 7 0 chr15 91597218 91597508 -9783013 + AluSx SINE Alu 1 292 -20 39 68 0 0 chr15 91597759 91597833 -9782688 + AT_rich Low_complexity Low_complexity 1 74 0 1273 124 5 25 chr15 91597878 91598079 -9782442 - AluJb SINE Alu -11 301 105 231 276 43 43 chr15 91598093 91598209 -9782312 - MIR3 SINE MIR -80 128 13 541 227 26 26 chr15 91599683 91599837 -9780684 + MIR SINE MIR 109 262 0 1940 174 0 3 chr15 91601010 91601309 -9779212 - AluSx SINE Alu -14 298 1 190 284 27 40 chr15 91601402 91601476 -9779045 - MIR SINE MIR -78 130 58 2216 131 0 0 chr15 91602141 91602453 -9778068 - AluSx SINE Alu 0 312 1 234 0 0 0 chr15 91605145 91605171 -9775350 + (A)n Simple_repeat Simple_repeat 1 26 0 25 0 0 0 chr15 91606209 91606234 -9774287 + GC_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr15 91606925 91606957 -9773564 + GC_rich Low_complexity Low_complexity 1 32 0 246 146 11 67 chr15 91606982 91607071 -9773450 + (CGGGG)n Simple_repeat Simple_repeat 1 84 0 21 0 0 0 chr15 91607080 91607101 -9773420 + GC_rich Low_complexity Low_complexity 1 21 0 298 143 48 16 chr15 91608132 91608195 -9772326 + MIR SINE MIR 76 140 -68 405 0 0 0 chr15 91608202 91608247 -9772274 + (TG)n Simple_repeat Simple_repeat 1 45 0 383 337 85 49 chr15 91608288 91608534 -9771987 + L2 LINE L2 2987 3241 -31 252 297 50 10 chr15 91609774 91609875 -9770646 - L2 LINE L2 -27 3245 3141 3433 148 17 14 chr15 91610382 91610665 -9769856 + MER73 LTR ERVL 1 282 -362 237 33 0 0 chr15 91610665 91610695 -9769826 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 3433 148 17 14 chr15 91610695 91611052 -9769469 + MER73 LTR ERVL 282 643 -1 1814 188 96 97 chr15 91611176 91611804 -9768717 - HERVL74 LTR ERVL -464 5221 4595 521 225 42 0 chr15 91611798 91611918 -9768603 - HERVL74 LTR ERVL -1659 4026 3902 * 5324 194 35 24 chr15 91611917 91613087 -9767434 - HERVL74 LTR ERVL -2042 3643 2488 2267 115 0 31 chr15 91613087 91613409 -9767112 - AluSx SINE Alu 0 312 1 5324 194 35 24 chr15 91613409 91614131 -9766390 - HERVL74 LTR ERVL -3197 2488 1776 1963 162 10 0 chr15 91614131 91614427 -9766094 - AluJb SINE Alu -8 304 6 5324 194 35 24 chr15 91614427 91614837 -9765684 - HERVL74 LTR ERVL -3909 1776 1372 2501 70 3 0 chr15 91614837 91615139 -9765382 - AluY SINE Alu -8 303 1 2438 80 3 0 chr15 91615144 91615444 -9765077 - AluSp SINE Alu -12 301 1 5324 194 35 24 chr15 91615444 91615486 -9765035 - HERVL74 LTR ERVL -4316 1369 1043 29 47 0 0 chr15 91615512 91615555 -9764966 + AT_rich Low_complexity Low_complexity 1 43 0 216 0 0 0 chr15 91615699 91615723 -9764798 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2036 184 18 5 chr15 91615865 91616256 -9764265 - MSTD LTR MaLR 0 396 1 2281 73 14 3 chr15 91617136 91617424 -9763097 - AluSc SINE Alu -17 292 2 1971 152 69 0 chr15 91617425 91617786 -9762735 + MER73 LTR ERVL 4 389 -255 2397 92 0 0 chr15 91617788 91618083 -9762438 + AluY SINE Alu 1 295 -16 341 266 133 48 chr15 91618871 91619059 -9761462 - MIR SINE MIR -50 212 9 275 279 207 70 chr15 91619671 91620116 -9760405 - MLT1J LTR MaLR 0 511 6 269 289 116 16 chr15 91620152 91620273 -9760248 + MIR SINE MIR 3 135 -127 755 305 91 23 chr15 91620508 91620947 -9759574 + L2 LINE L2 2496 2964 -350 544 303 81 17 chr15 91621355 91621715 -9758806 - L1ME LINE L1 -389 5732 5350 2328 55 4 0 chr15 91622826 91623099 -9757422 + AluY SINE Alu 1 274 -37 203 308 31 0 chr15 91624769 91624834 -9755687 - L2 LINE L2 -214 3058 2992 326 324 62 17 chr15 91628212 91628388 -9752133 + L1M3 LINE L1 5121 5304 -842 1373 274 87 34 chr15 91630959 91631522 -9748999 - Zaphod DNA AcHobo -3373 658 66 831 265 33 23 chr15 91631601 91631907 -9748614 - L2 LINE L2 -881 2433 2125 674 150 0 95 chr15 91631929 91632040 -9748481 + L1M3 LINE L1 5452 5548 -635 266 210 35 0 chr15 91632040 91632113 -9748408 + AluJ/monomer SINE Alu 1 36 -266 2350 144 53 0 chr15 91633811 91634187 -9746334 + MSTD LTR MaLR 1 396 0 2376 105 0 0 chr15 91634411 91634717 -9745804 + AluSq SINE Alu 1 306 -7 277 270 212 9 chr15 91634925 91635035 -9745486 + MIR SINE MIR 20 150 -62 2353 104 0 7 chr15 91637100 91637407 -9743114 + AluSx SINE Alu 1 305 -7 388 283 67 76 chr15 91637412 91637645 -9742876 + L1ME4a LINE L1 5602 5833 -288 1352 211 68 14 chr15 91637645 91638010 -9742511 - MER58D DNA MER1_type -1 385 1 388 283 67 76 chr15 91638010 91638091 -9742430 + L1ME4a LINE L1 5833 5913 -208 392 323 0 8 chr15 91638091 91638215 -9742306 + MLT1I LTR MaLR 1 123 -286 3677 200 34 35 chr15 91638248 91639193 -9741328 + L1ME1 LINE L1 5204 6151 -15 828 153 6 23 chr15 91639228 91639405 -9741116 + GA-rich Low_complexity Low_complexity 1 174 0 682 167 0 43 chr15 91639510 91639696 -9740825 + GA-rich Low_complexity Low_complexity 1 178 0 258 171 26 26 chr15 91639710 91639786 -9740735 + GA-rich Low_complexity Low_complexity 1 76 0 360 0 0 0 chr15 91640745 91640785 -9739736 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 736 253 48 44 chr15 91640861 91641110 -9739411 + MIR SINE MIR 1 250 -12 512 160 106 120 chr15 91641810 91641931 -9738590 - MER20B DNA MER1_type -4 779 658 2385 92 0 0 chr15 91641931 91642226 -9738295 - AluY SINE Alu -15 296 2 512 160 106 120 chr15 91642226 91642379 -9738142 - MER20B DNA MER1_type -125 658 509 2079 133 77 3 chr15 91642462 91642824 -9737697 - MSTA LTR MaLR -39 389 1 1165 240 94 39 chr15 91642882 91643256 -9737265 - MER20B DNA MER1_type -327 456 55 2228 103 3 0 chr15 91643256 91643548 -9736973 + AluSg SINE Alu 1 293 -17 1165 240 94 39 chr15 91643548 91643586 -9736935 - MER20B DNA MER1_type -728 55 21 325 310 168 9 chr15 91643591 91643704 -9736817 - MIR3 SINE MIR -49 159 29 908 79 0 0 chr15 91644139 91644253 -9736268 + AluY SINE Alu 1 114 -197 1841 65 0 53 chr15 91644253 91644498 -9736023 + AluY SINE Alu 67 298 -13 369 244 72 92 chr15 91644710 91645100 -9735421 + LTR15 LTR ERV1 112 493 0 187 409 11 21 chr15 91645192 91645378 -9735143 - L2 LINE L2 -981 2333 2150 774 144 0 8 chr15 91645537 91645655 -9734866 - AluSq/x SINE Alu -195 117 1 5203 136 20 5 chr15 91646096 91646641 -9733880 + L1PA16 LINE L1 5271 5837 -329 2340 104 3 0 chr15 91646641 91646950 -9733571 + AluSx SINE Alu 1 310 -2 5203 136 20 5 chr15 91646950 91647286 -9733235 + L1PA16 LINE L1 5837 6166 0 218 349 110 0 chr15 91648925 91649034 -9731487 + L2 LINE L2 2231 2351 -963 3977 181 34 47 chr15 91649295 91649487 -9731034 + L1MD2 LINE L1 5384 5577 -782 2247 119 0 0 chr15 91649487 91649782 -9730739 - AluSx SINE Alu -13 299 5 3977 181 34 47 chr15 91649782 91650553 -9729968 + L1MD2 LINE L1 5577 6335 -24 971 169 5 53 chr15 91650593 91650643 -9729878 - L1MB3 LINE L1 0 6183 6132 2389 78 7 3 chr15 91650643 91650939 -9729582 - AluSq SINE Alu -16 297 1 971 169 5 53 chr15 91650939 91651095 -9729426 - L1MB3 LINE L1 -51 6132 5987 495 188 21 0 chr15 91651317 91651413 -9729108 + MER69 DNA AcHobo 60 157 -1069 1035 138 0 0 chr15 91651468 91651620 -9728901 + AluSc SINE Alu 158 309 0 209 325 58 0 chr15 91651859 91651974 -9728547 - MIR3 SINE MIR -9 199 72 215 277 21 0 chr15 91652023 91652070 -9728451 - L2 LINE L2 -14 3299 3252 227 274 137 0 chr15 91652090 91652163 -9728358 - MIR SINE MIR -31 231 149 1312 102 25 5 chr15 91652163 91652359 -9728162 + MSTA LTR MaLR 1 200 -228 1208 78 0 0 chr15 91652361 91652503 -9728018 + AluSq/x SINE Alu 3 144 -168 409 106 0 0 chr15 91652503 91652569 -9727952 + Alu SINE Alu 236 301 -8 1355 127 53 0 chr15 91652570 91652798 -9727723 + MSTA LTR MaLR 189 428 0 534 241 23 15 chr15 91652799 91652932 -9727589 - MIR SINE MIR -110 152 19 3113 198 75 32 chr15 91653208 91654214 -9726307 - MER69 DNA AcHobo 0 2526 1477 2266 85 0 17 chr15 91654350 91654645 -9725876 - AluSc SINE Alu -19 290 1 1223 126 23 19 chr15 91654698 91654912 -9725609 + MLT2C2 LTR ERVL 6 220 -244 352 285 39 11 chr15 91655382 91655506 -9725015 + MER5A DNA MER1_type 4 139 -48 2772 159 39 2 chr15 91655521 91656006 -9724515 + L1MB3 LINE L1 5672 6174 -9 2344 102 10 0 chr15 91656028 91656322 -9724199 + AluSx SINE Alu 1 297 -15 2616 51 3 3 chr15 91656918 91657229 -9723292 - AluY SINE Alu 0 311 1 2397 78 0 0 chr15 91658097 91658409 -9722112 - AluSx SINE Alu 0 312 1 1247 156 83 0 chr15 91658452 91658670 -9721851 - MER46A DNA MER2_type 0 236 1 640 174 145 87 chr15 91658886 91659032 -9721489 - MER20B DNA MER1_type 0 219 56 807 221 0 63 chr15 91659032 91659113 -9721408 - MER45A DNA AcHobo -1403 178 93 1891 123 43 56 chr15 91659113 91659415 -9721106 + AluSx SINE Alu 1 298 -14 807 221 0 63 chr15 91659415 91659523 -9720998 - MER45A DNA AcHobo -1488 93 1 640 174 145 87 chr15 91659523 91659583 -9720938 - MER20B DNA MER1_type -163 56 1 1284 140 5 0 chr15 91659699 91659892 -9720629 + MER58A DNA MER1_type 28 221 -3 712 168 0 9 chr15 91661453 91661566 -9718955 + FLAM_C SINE Alu 6 117 -26 409 215 108 0 chr15 91661739 91661832 -9718689 - MER5A DNA MER1_type -83 106 4 1945 152 20 0 chr15 91662005 91662302 -9718219 - AluJo SINE Alu -9 303 1 192 40 0 0 chr15 91662411 91662436 -9718085 + (TTG)n Simple_repeat Simple_repeat 2 26 0 268 256 33 33 chr15 91662442 91662532 -9717989 + MIR SINE MIR 66 155 -107 484 253 242 11 chr15 91662543 91662725 -9717796 + MIR SINE MIR 22 245 -17 602 294 69 25 chr15 91663251 91663571 -9716950 + MER102b DNA MER1_type 3 336 -5 293 311 92 19 chr15 91663704 91663845 -9716676 + MIR3 SINE MIR 13 157 -74 996 104 0 15 chr15 91663971 91664105 -9716416 + AluY SINE Alu 1 132 -179 2344 71 0 39 chr15 91664116 91664427 -9716094 + AluY SINE Alu 1 299 -12 442 301 131 0 chr15 91665615 91665768 -9714753 - MER69A DNA AcHobo 0 177 5 2244 94 3 32 chr15 91666453 91666761 -9713760 + AluSx SINE Alu 1 299 -13 2317 79 0 41 chr15 91666854 91667172 -9713349 + AluY SINE Alu 1 305 -6 1957 131 30 7 chr15 91667670 91667967 -9712554 + AluSx SINE Alu 1 304 -8 190 275 0 0 chr15 91668086 91668126 -9712395 + L2 LINE L2 3218 3257 -15 188 155 0 85 chr15 91669568 91669620 -9710901 + MER5C DNA MER1_type 4 49 -140 659 233 110 0 chr15 91669628 91669774 -9710747 + MER5A DNA MER1_type 28 189 0 2001 110 4 7 chr15 91669807 91670162 -9710359 + AluSx SINE Alu 3 356 0 36 62 0 0 chr15 91670710 91670774 -9709747 + AT_rich Low_complexity Low_complexity 1 64 0 1466 199 11 64 chr15 91670775 91670900 -9709621 - L1MB8 LINE L1 -9 6169 6039 1792 173 10 3 chr15 91670900 91671195 -9709326 + AluJb SINE Alu 1 297 -15 2306 75 11 0 chr15 91671197 91671521 -9709000 + AluSp SINE Alu 1 327 0 1466 199 11 64 chr15 91671521 91671796 -9708725 - L1MB8 LINE L1 -140 6038 5785 1800 175 48 0 chr15 91672377 91672669 -9707852 + AluJo SINE Alu 2 307 -5 340 288 112 126 chr15 91673133 91673618 -9706903 + L2 LINE L2 2239 2717 -597 2443 97 0 0 chr15 91673618 91673927 -9706594 - AluSg SINE Alu -1 309 1 340 288 112 126 chr15 91673927 91673996 -9706525 + L2 LINE L2 2717 2785 -529 305 226 65 54 chr15 91674051 91674144 -9706377 + L2 LINE L2 3170 3263 -9 181 335 225 3 chr15 91675370 91675627 -9704894 - L2 LINE L2 -593 2721 2376 2615 59 0 3 chr15 91675627 91675931 -9704590 + AluSq SINE Alu 1 303 -10 181 335 225 3 chr15 91675931 91675998 -9704523 - L2 LINE L2 -938 2376 2325 1038 301 85 22 chr15 91677280 91677741 -9702780 - MLT1K LTR MaLR -39 549 60 236 335 155 43 chr15 91678809 91679087 -9701434 - L2 LINE L2 -44 3228 2920 2603 44 0 3 chr15 91680481 91680779 -9699742 - AluY SINE Alu -14 297 1 24 53 0 0 chr15 91680785 91680823 -9699698 + AT_rich Low_complexity Low_complexity 1 38 0 301 312 111 45 chr15 91681011 91681210 -9699311 - L1MC4a LINE L1 -1898 5910 5699 2397 81 0 16 chr15 91682518 91682828 -9697693 + AluY SINE Alu 1 305 -6 292 325 67 8 chr15 91682846 91682966 -9697555 - MIR SINE MIR -15 247 121 247 204 0 37 chr15 91683367 91683421 -9697100 + L2 LINE L2 3221 3272 0 368 241 116 0 chr15 91683865 91683977 -9696544 - L2 LINE L2 -1 3271 3147 1968 110 0 57 chr15 91685617 91685935 -9694586 - AluSx SINE Alu -9 303 4 2901 131 66 11 chr15 91686475 91686647 -9693874 - L1MA7 LINE L1 -2 6289 6128 2323 101 92 15 chr15 91686647 91686985 -9693536 - THE1B LTR MaLR 0 364 1 2901 131 66 11 chr15 91686985 91687340 -9693181 - L1MA7 LINE L1 -163 6128 5733 1640 83 45 12 chr15 91687348 91687590 -9692931 + L1MA7 LINE L1 5478 5727 -564 439 376 42 23 chr15 91687839 91688145 -9692376 - L1M4 LINE L1 -2396 3750 3439 2251 90 7 0 chr15 91688147 91688447 -9692074 - AluSx SINE Alu -10 302 1 258 32 0 0 chr15 91688559 91688590 -9691931 + (TCTG)n Simple_repeat Simple_repeat 1 31 0 1885 111 35 3 chr15 91688703 91688992 -9691529 + AluSq SINE Alu 5 302 -11 26 0 0 0 chr15 91689977 91690003 -9690518 + AT_rich Low_complexity Low_complexity 1 26 0 327 185 0 0 chr15 91690003 91690068 -9690453 - L1MB2 LINE L1 -32 6139 6075 726 231 95 58 chr15 91690273 91690515 -9690006 - MIR SINE MIR -4 258 8 333 216 99 72 chr15 91691017 91691198 -9689323 + LTR67 LTR ERVL 372 557 0 273 311 22 11 chr15 91691260 91691350 -9689171 - L3 LINE CR1 -624 953 863 298 158 0 18 chr15 91691997 91692054 -9688467 - MLT2F LTR ERVL 0 663 608 2191 105 0 0 chr15 91692071 91692367 -9688154 - AluSx SINE Alu -16 296 1 1380 211 16 45 chr15 91692389 91692763 -9687758 - MLT2C1 LTR ERVL -34 363 1 1874 168 6 22 chr15 91693576 91693891 -9686630 + MLT1A1 LTR MaLR 2 311 -54 1047 116 0 7 chr15 91693891 91694037 -9686484 - AluSq/x SINE Alu -168 145 1 402 280 36 60 chr15 91694086 91694165 -9686356 - MER20B DNA MER1_type -619 164 85 2661 134 19 30 chr15 91694165 91694552 -9685969 + MSTA LTR MaLR 1 384 -44 2419 59 0 7 chr15 91694552 91694857 -9685664 - AluY SINE Alu -8 303 1 2661 134 19 30 chr15 91694857 91694902 -9685619 + MSTA LTR MaLR 384 428 0 402 280 36 60 chr15 91694902 91694990 -9685531 - MER20B DNA MER1_type -698 85 1 253 304 29 0 chr15 91695140 91695242 -9685279 - MLT1L LTR MaLR -2 613 509 660 253 62 36 chr15 91695267 91695461 -9685060 + MIR SINE MIR 27 225 -37 976 98 0 0 chr15 91695485 91695617 -9684904 - AluSq/x SINE Alu -181 132 1 2362 67 7 0 chr15 91695628 91695926 -9684595 - AluY SINE Alu -11 300 1 1248 56 0 0 chr15 91696051 91696212 -9684309 - L1PA5 LINE L1 0 6154 5994 266 255 224 0 chr15 91696410 91696508 -9684013 - MER5C DNA MER1_type -204 120 1 186 360 93 0 chr15 91697180 91697266 -9683255 + L3b LINE CR1 1473 1566 -17 226 292 158 50 chr15 91697509 91697525 -9682996 - L2 LINE L2 0 3313 3300 2319 68 3 7 chr15 91697525 91697834 -9682687 + AluY SINE Alu 1 308 -3 198 103 0 0 chr15 91697834 91697863 -9682658 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 226 292 158 50 chr15 91697863 91697965 -9682556 - L2 LINE L2 -12 3301 3181 394 277 6 79 chr15 91698133 91698310 -9682211 + MER5A DNA MER1_type 26 189 0 196 336 78 8 chr15 91698327 91698455 -9682066 + L2 LINE L2 2918 3054 -218 2288 92 0 0 chr15 91698767 91699073 -9681448 - AluSg SINE Alu -4 306 1 504 325 6 6 chr15 91699834 91700003 -9680518 + MIR SINE MIR 16 184 -78 1500 168 0 4 chr15 91700014 91700288 -9680233 - AluJb SINE Alu -25 287 15 1747 55 18 0 chr15 91700485 91700705 -9679816 - L1PA8 LINE L1 -17 6155 5932 2137 156 28 35 chr15 91700705 91701103 -9679418 - MSTB1 LTR MaLR -37 395 1 191 276 10 0 chr15 91701285 91701383 -9679138 + (CCA)n Simple_repeat Simple_repeat 2 100 0 613 296 71 5 chr15 91701383 91701579 -9678942 - MIR SINE MIR -7 255 47 707 110 26 39 chr15 91701958 91702186 -9678335 + (CAGAGA)n Simple_repeat Simple_repeat 1 225 0 188 146 0 42 chr15 91702328 91702376 -9678145 + (CAGAGA)n Simple_repeat Simple_repeat 3 48 0 327 239 0 0 chr15 91702407 91702574 -9677947 + GA-rich Low_complexity Low_complexity 2 168 0 235 275 92 37 chr15 91703604 91703713 -9676808 + MIR SINE MIR 63 177 -85 2002 94 49 40 chr15 91703934 91704079 -9676442 - MER4A LTR ERV1 0 664 522 2118 119 14 36 chr15 91704079 91704440 -9676081 - THE1A LTR MaLR 0 355 3 2002 94 49 40 chr15 91704440 91704575 -9675946 - MER4A LTR ERV1 -142 522 390 2263 73 0 10 chr15 91704575 91704875 -9675646 - AluY SINE Alu -12 299 3 2002 94 49 40 chr15 91704875 91705146 -9675375 - MER4A LTR ERV1 -274 390 1 532 276 14 21 chr15 91705488 91705633 -9674888 - MIR SINE MIR -70 192 49 192 179 0 0 chr15 91706576 91706615 -9673906 + GA-rich Low_complexity Low_complexity 3 41 0 1695 170 58 50 chr15 91707754 91707909 -9672612 + MLT1B LTR MaLR 2 154 -236 2327 87 0 31 chr15 91707909 91708232 -9672289 + AluSq SINE Alu 1 313 0 1695 170 58 50 chr15 91708232 91708435 -9672086 + MLT1B LTR MaLR 154 363 -27 362 324 19 0 chr15 91708533 91708641 -9671880 + MIR SINE MIR 118 227 -35 2287 78 3 3 chr15 91709114 91709421 -9671100 - AluSx SINE Alu -5 307 1 228 294 29 59 chr15 91709535 91709637 -9670884 - L2 LINE L2 -1 3312 3214 306 292 17 58 chr15 91710299 91710419 -9670102 + MER5A DNA MER1_type 1 115 -74 479 272 47 82 chr15 91710652 91710806 -9669715 + MIR SINE MIR 2 145 -117 2274 75 10 0 chr15 91710806 91711098 -9669423 + AluSc SINE Alu 1 295 -14 479 272 47 82 chr15 91711098 91711200 -9669321 + MIR SINE MIR 145 249 -13 187 302 16 0 chr15 91711232 91711295 -9669226 + L3b LINE CR1 1355 1418 -165 829 224 31 45 chr15 91711386 91711609 -9668912 - MIR SINE MIR -35 227 8 1763 156 10 7 chr15 91711701 91711996 -9668525 - AluJo SINE Alu -16 296 1 200 330 97 10 chr15 91712042 91712145 -9668376 + MIR SINE MIR 36 147 -115 258 108 0 0 chr15 91712145 91712182 -9668339 + MER4A LTR ERV1 1 37 -627 * 328 195 143 0 chr15 91712178 91712255 -9668266 + MER4A LTR ERV1 212 299 -365 541 172 221 14 chr15 91712338 91712483 -9668038 + MER4C LTR ERV1 291 465 0 367 305 26 13 chr15 91712610 91712761 -9667760 - L3b LINE CR1 -329 1254 1102 5917 102 18 0 chr15 91712954 91713989 -9666532 - L1PB2 LINE L1 -76 6075 5022 574 300 66 44 chr15 91714458 91714685 -9665836 + MIR SINE MIR 21 252 -10 210 118 0 0 chr15 91714692 91714726 -9665795 + (ATG)n Simple_repeat Simple_repeat 2 35 0 307 304 0 0 chr15 91714818 91714897 -9665624 + L1MC4 LINE L1 6636 6714 -1328 607 179 159 20 chr15 91714935 91715086 -9665435 - MER63B DNA MER1_type -264 172 1 362 232 131 98 chr15 91715539 91715906 -9664615 + L1ME4a LINE L1 5706 6084 -37 28 22 0 22 chr15 91715916 91715930 -9664591 + AT_rich Low_complexity Low_complexity 1 14 -31 692 124 7 90 chr15 91715930 91716075 -9664446 - FLAM_C SINE Alu 0 133 1 28 22 0 22 chr15 91716075 91716106 -9664415 + AT_rich Low_complexity Low_complexity 14 45 0 213 180 40 20 chr15 91716122 91716172 -9664349 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 569 311 96 5 chr15 91716825 91717034 -9663487 + MIR SINE MIR 2 229 -33 196 222 28 0 chr15 91717089 91717161 -9663360 + CT-rich Low_complexity Low_complexity 2 75 0 2442 48 0 3 chr15 91717330 91717639 -9662882 - AluY SINE Alu -3 308 1 4680 162 51 53 chr15 91718002 91718162 -9662359 - L1MB2 LINE L1 0 6171 6012 1923 98 0 0 chr15 91718162 91718417 -9662104 + AluSq SINE Alu 1 255 -58 4680 162 51 53 chr15 91718417 91719166 -9661355 - L1MB2 LINE L1 -159 6012 5263 2251 82 3 0 chr15 91719166 91719458 -9661063 - AluY SINE Alu -16 295 3 2115 82 3 3 chr15 91719459 91719741 -9660780 - AluSc SINE Alu -13 296 15 4680 162 51 53 chr15 91719741 91719984 -9660537 - L1MB2 LINE L1 -907 5264 5028 21 57 0 0 chr15 91720482 91720517 -9660004 + AT_rich Low_complexity Low_complexity 1 35 0 591 313 69 19 chr15 91720616 91720936 -9659585 - L1MC/D LINE L1 -2160 6146 5811 227 291 95 24 chr15 91720967 91721177 -9659344 - L1MC/D LINE L1 -4136 2510 2286 1093 112 48 0 chr15 91721201 91721388 -9659133 - L1MA9 LINE L1 -1 6311 6116 1561 89 4 9 chr15 91721391 91721616 -9658905 - L1PA13 LINE L1 -1 6162 5939 1325 160 24 6 chr15 91721616 91721865 -9658656 + L1MA9 LINE L1 5885 6146 -28 1508 212 46 43 chr15 91721890 91722263 -9658258 + MLT1A2 LTR MaLR 1 374 0 21 36 0 0 chr15 91722296 91722324 -9658197 + AT_rich Low_complexity Low_complexity 1 28 0 2235 63 0 7 chr15 91722352 91722665 -9657856 - AluSc SINE Alu 0 311 1 349 284 39 54 chr15 91722672 91722876 -9657645 - L1MC/D LINE L1 -4488 2158 1958 2860 226 25 69 chr15 91722876 91723691 -9656830 - L1MC/D LINE L1 -5756 786 8 1887 142 10 0 chr15 91723730 91724019 -9656502 - AluSq SINE Alu -21 292 1 213 39 0 0 chr15 91724040 91724066 -9656455 + (TG)n Simple_repeat Simple_repeat 1 26 0 230 174 22 0 chr15 91724074 91724120 -9656401 + (CA)n Simple_repeat Simple_repeat 2 48 0 420 284 83 33 chr15 91724121 91724444 -9656077 - L1MEc LINE L1 -3140 3075 2087 248 250 110 0 chr15 91724520 91724620 -9655901 - HAL1 LINE L1 -835 1672 1562 265 100 0 0 chr15 91724650 91724690 -9655831 + U5 snRNA snRNA 5 44 -72 480 305 18 12 chr15 91724823 91724987 -9655534 + MIR SINE MIR 63 227 -35 438 306 118 51 chr15 91725010 91725265 -9655256 - HAL1 LINE L1 -1140 1367 1096 297 282 186 6 chr15 91725778 91725934 -9654587 - L1ME LINE L1 -294 5827 5644 541 292 20 14 chr15 91726083 91726256 -9654265 - MER5A DNA MER1_type -1 188 4 223 311 119 20 chr15 91726508 91726659 -9653862 + MIR3 SINE MIR 21 186 -22 186 43 0 0 chr15 91727751 91727774 -9652747 + (CAGGG)n Simple_repeat Simple_repeat 3 25 0 343 307 72 0 chr15 91727855 91728008 -9652513 - MER103 DNA DNA -2 164 1 1568 149 52 0 chr15 91728327 91728596 -9651925 - AluJb SINE Alu -9 303 21 326 324 139 31 chr15 91728650 91728937 -9651584 + MLT1K LTR MaLR 156 473 -115 514 343 142 15 chr15 91729169 91729493 -9651028 - L3 LINE CR1 -24 1553 1189 621 312 40 51 chr15 91730210 91730582 -9649939 - L1ME4a LINE L1 -262 5859 5492 226 324 162 9 chr15 91730637 91730748 -9649773 - L3 LINE CR1 -469 1108 981 1287 158 114 28 chr15 91730754 91730966 -9649555 + MLT1D LTR MaLR 1 240 -265 318 26 0 0 chr15 91730966 91731005 -9649516 + (GA)n Simple_repeat Simple_repeat 2 40 0 1287 158 114 28 chr15 91731005 91731046 -9649475 + MLT1D LTR MaLR 240 276 -229 2857 156 0 32 chr15 91731047 91731109 -9649412 + LTR32 LTR ERVL 14 76 -395 1964 113 69 33 chr15 91731109 91731471 -9649050 + THE1C LTR MaLR 1 375 0 2857 156 0 32 chr15 91731471 91731881 -9648640 + LTR32 LTR ERVL 76 471 0 1021 186 109 5 chr15 91731881 91732090 -9648431 + MLT1D LTR MaLR 274 504 -1 207 0 0 0 chr15 91732378 91732401 -9648120 + (T)n Simple_repeat Simple_repeat 1 23 0 514 143 0 0 chr15 91733347 91733438 -9647083 - L1PA16 LINE L1 -16 6150 6060 471 286 60 36 chr15 91733976 91734144 -9646377 + MIR SINE MIR 20 191 -71 2063 101 0 17 chr15 91734156 91734454 -9646067 + AluSx SINE Alu 1 293 -19 1474 137 0 26 chr15 91734499 91734733 -9645788 + AluJo SINE Alu 71 298 -14 1828 171 13 18 chr15 91734995 91735355 -9645166 - Charlie5 DNA MER1_type -1 2623 2263 193 29 29 29 chr15 91735355 91735390 -9645131 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2025 103 4 0 chr15 91735392 91735673 -9644848 - AluSx SINE Alu -30 282 1 1828 171 13 18 chr15 91735673 91735701 -9644820 - Charlie5 DNA MER1_type -362 2262 2234 412 195 124 0 chr15 91735698 91735811 -9644710 - Charlie5 DNA MER1_type -2485 127 1 * 442 288 24 16 chr15 91735924 91736049 -9644472 + MER5B DNA MER1_type 35 160 -18 281 113 32 97 chr15 91736875 91736937 -9643584 + MER117 DNA MER1_type 70 127 -70 216 200 89 0 chr15 91737490 91737535 -9642986 + L2 LINE L2 3224 3272 0 361 56 0 56 chr15 91737595 91737666 -9642855 + (TA)n Simple_repeat Simple_repeat 2 68 0 569 252 143 52 chr15 91737728 91738060 -9642461 + L2 LINE L2 2675 3080 -233 1889 142 7 3 chr15 91738060 91738362 -9642159 - AluSx SINE Alu -5 307 5 569 252 143 52 chr15 91738362 91738565 -9641956 + L2 LINE L2 3080 3263 -50 2393 114 5 35 chr15 91738755 91739131 -9641390 + MLT1A1 LTR MaLR 1 365 0 498 232 40 8 chr15 91739623 91739748 -9640773 + MIR SINE MIR 20 148 -114 25 31 0 0 chr15 91740423 91740455 -9640066 + AT_rich Low_complexity Low_complexity 1 32 0 225 346 96 0 chr15 91740486 91740642 -9639879 - MIR SINE MIR -20 242 72 2125 75 51 0 chr15 91741391 91741563 -9638958 - AluY SINE Alu -2 309 114 207 0 0 0 chr15 91741563 91741586 -9638935 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2125 75 51 0 chr15 91741586 91741707 -9638814 - AluY SINE Alu -197 114 1 1232 161 9 9 chr15 91741727 91741950 -9638571 - AluJo SINE Alu -30 282 60 303 379 108 23 chr15 91742908 91743259 -9637262 + L2 LINE L2 2495 2875 -439 689 241 38 0 chr15 91743299 91743457 -9637064 + MIR SINE MIR 66 229 -33 209 383 12 0 chr15 91743578 91743659 -9636862 + L2 LINE L2 3105 3186 -86 2239 106 0 0 chr15 91744791 91745094 -9635427 - AluSc SINE Alu -6 303 1 1031 270 61 6 chr15 91745462 91745807 -9634714 + L1ME3A LINE L1 5593 5956 -214 444 331 24 6 chr15 91746201 91746367 -9634154 - MIR SINE MIR -9 253 85 207 0 0 0 chr15 91746519 91746542 -9633979 + (TTA)n Simple_repeat Simple_repeat 2 24 0 372 269 134 0 chr15 91747422 91747541 -9632980 + MLT1I LTR MaLR 20 154 -255 590 224 77 0 chr15 91747596 91747739 -9632782 + MLT1I LTR MaLR 256 409 0 498 206 19 0 chr15 91747866 91747973 -9632548 - L1ME1 LINE L1 -255 6305 6197 485 235 69 92 chr15 91748222 91748613 -9631908 - LTR15 LTR ERV1 0 493 112 1334 223 156 74 chr15 91748858 91749059 -9631462 - L1ME3A LINE L1 -2 6168 5985 2371 68 0 0 chr15 91749059 91749354 -9631167 - AluSc SINE Alu -14 295 1 1334 223 156 74 chr15 91749354 91749367 -9631154 - L1ME3A LINE L1 -185 5985 5974 2362 78 0 3 chr15 91749367 91749675 -9630846 - AluY SINE Alu -4 307 1 1334 223 156 74 chr15 91749675 91750029 -9630492 - L1ME3A LINE L1 -196 5974 5552 21 36 0 0 chr15 91750031 91750059 -9630462 + AT_rich Low_complexity Low_complexity 1 28 0 8627 225 83 19 chr15 91750062 91750214 -9630307 - L1ME1 LINE L1 -341 6219 6078 2371 69 3 0 chr15 91750214 91750518 -9630003 - AluY SINE Alu -6 305 1 8627 225 83 19 chr15 91750518 91752508 -9628013 - L1ME1 LINE L1 -482 6078 4215 2185 107 3 0 chr15 91752508 91752818 -9627703 - AluY SINE Alu 0 311 1 8627 225 83 19 chr15 91752818 91753095 -9627426 - L1ME1 LINE L1 -2345 4215 3957 2304 161 10 0 chr15 91753095 91753481 -9627040 + MLT1B LTR MaLR 1 390 0 8627 225 83 19 chr15 91753481 91754359 -9626162 - L1ME1 LINE L1 -2603 3957 2723 2156 105 0 25 chr15 91754366 91754680 -9625841 - AluY SINE Alu -5 306 1 988 114 0 40 chr15 91754680 91754829 -9625692 - AluSg SINE Alu -167 143 1 2230 69 7 0 chr15 91754833 91755124 -9625397 - AluSp SINE Alu -20 293 1 1216 247 77 36 chr15 91755124 91755196 -9625325 - L1ME1 LINE L1 -3890 2650 2582 1801 151 3 22 chr15 91755196 91755508 -9625013 - AluJb SINE Alu -6 306 1 1216 247 77 36 chr15 91755508 91756143 -9624378 - L1ME1 LINE L1 -3958 2582 1997 323 243 45 18 chr15 91756143 91756254 -9624267 + L1MA9 LINE L1 6156 6269 -43 1025 263 106 65 chr15 91756291 91756695 -9623826 - L1ME1 LINE L1 -4684 2037 1651 2285 95 6 13 chr15 91756695 91757010 -9623511 - AluSq SINE Alu 0 313 1 1025 263 106 65 chr15 91757010 91757655 -9622866 - L1ME1 LINE L1 -5070 1651 910 258 32 0 0 chr15 91757970 91758001 -9622520 + (GA)n Simple_repeat Simple_repeat 1 31 0 468 332 30 33 chr15 91758185 91758489 -9622032 - L1ME1 LINE L1 -6209 331 29 198 0 0 0 chr15 91759622 91759644 -9620877 + (T)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr15 91760194 91760215 -9620306 + AT_rich Low_complexity Low_complexity 1 21 0 2340 75 0 13 chr15 91760856 91761163 -9619358 + AluY SINE Alu 1 303 -8 928 283 148 19 chr15 91761719 91762044 -9618477 + L2 LINE L2 2928 3294 -19 1690 178 0 3 chr15 91762155 91762464 -9618057 + AluJo SINE Alu 5 312 0 204 271 85 0 chr15 91763310 91763369 -9617152 - L2 LINE L2 -14 3258 3195 1982 90 4 0 chr15 91763981 91764248 -9616273 + AluY SINE Alu 12 279 -32 216 0 0 0 chr15 91764256 91764280 -9616241 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4200 76 12 3 chr15 91764464 91765030 -9615491 - L1PA13 LINE L1 -8 6155 5585 757 173 6 65 chr15 91765795 91765963 -9614558 + MER5A DNA MER1_type 32 189 0 399 268 104 44 chr15 91766055 91766238 -9614283 - L2 LINE L2 0 3313 3120 2290 168 16 0 chr15 91767342 91767729 -9612792 + MER57A LTR ERV1 10 402 -1 455 285 17 17 chr15 91768124 91768296 -9612225 + MER5B DNA MER1_type 4 175 -3 314 319 132 20 chr15 91768648 91769099 -9611422 - L2 LINE L2 -218 3054 2553 252 0 0 0 chr15 91769251 91769281 -9611240 + (TG)n Simple_repeat Simple_repeat 1 58 0 252 0 0 0 chr15 91769281 91769309 -9611212 + (TG)n Simple_repeat Simple_repeat 1 28 0 315 312 0 13 chr15 91770269 91770297 -9610224 + GA-rich Low_complexity Low_complexity 2 29 -124 219 36 0 0 chr15 91770297 91770325 -9610196 + (TG)n Simple_repeat Simple_repeat 1 28 0 315 312 0 13 chr15 91770325 91770450 -9610071 + GA-rich Low_complexity Low_complexity 29 153 0 266 267 22 28 chr15 91770394 91770574 -9609947 + (TGAG)n Simple_repeat Simple_repeat 2 180 0 * 243 303 0 27 chr15 91770490 91770642 -9609879 + GA-rich Low_complexity Low_complexity 1 149 -31 * 198 0 0 0 chr15 91770642 91770664 -9609857 + (TG)n Simple_repeat Simple_repeat 1 22 0 243 303 0 27 chr15 91770664 91770696 -9609825 + GA-rich Low_complexity Low_complexity 149 180 0 359 260 0 45 chr15 91770720 91770750 -9609771 + GA-rich Low_complexity Low_complexity 2 32 -138 234 0 0 0 chr15 91770750 91770776 -9609745 + (TG)n Simple_repeat Simple_repeat 1 26 0 359 260 0 45 chr15 91770776 91770858 -9609663 + GA-rich Low_complexity Low_complexity 32 116 -54 198 0 0 0 chr15 91770858 91770880 -9609641 + (TG)n Simple_repeat Simple_repeat 1 22 0 359 260 0 45 chr15 91770880 91770910 -9609611 + GA-rich Low_complexity Low_complexity 116 138 -32 180 0 0 0 chr15 91770910 91770930 -9609591 + (TG)n Simple_repeat Simple_repeat 1 20 0 359 260 0 45 chr15 91770930 91770962 -9609559 + GA-rich Low_complexity Low_complexity 138 170 0 356 103 0 15 chr15 91770963 91771031 -9609490 + (TG)n Simple_repeat Simple_repeat 2 68 0 1894 119 0 30 chr15 91771045 91771367 -9609154 + AluSx SINE Alu 1 313 0 1180 158 57 0 chr15 91771492 91771738 -9608783 - L1MA8 LINE L1 -6 6285 6026 1069 157 19 19 chr15 91771788 91771998 -9608523 - L1MA8 LINE L1 -237 6054 5845 272 286 12 24 chr15 91772101 91772185 -9608336 - MIR SINE MIR -99 163 81 541 300 72 18 chr15 91773637 91773860 -9606661 - MIR SINE MIR -22 240 6 268 273 102 28 chr15 91775171 91775347 -9605174 + MER67A LTR ERV1 338 526 -17 2228 82 17 0 chr15 91775541 91775833 -9604688 + AluSx SINE Alu 1 297 -15 2482 47 0 0 chr15 91775927 91776223 -9604298 + AluY SINE Alu 1 296 -15 386 198 97 58 chr15 91776547 91776793 -9603728 + L1ME LINE L1 5284 5496 -670 21 36 0 0 chr15 91777421 91777449 -9603072 + AT_rich Low_complexity Low_complexity 1 28 0 367 268 77 11 chr15 91777471 91777653 -9602868 - MIR SINE MIR -46 216 22 228 262 0 0 chr15 91777975 91778036 -9602485 - L1ME4a LINE L1 -96 6025 5965 1470 214 128 33 chr15 91778639 91779060 -9601461 + MLT1C LTR MaLR 7 467 0 2627 146 22 28 chr15 91779101 91779560 -9600961 - LTR32 LTR ERVL 0 471 16 904 247 119 12 chr15 91779638 91779889 -9600632 + MLT1K LTR MaLR 234 511 -77 189 0 0 0 chr15 91780164 91780185 -9600336 + (TTCC)n Simple_repeat Simple_repeat 4 24 0 428 296 28 21 chr15 91780417 91780559 -9599962 - MIR SINE MIR -90 172 30 * 465 233 173 13 chr15 91780552 91780702 -9599819 + MER5A DNA MER1_type 10 183 -6 215 162 0 0 chr15 91781599 91781636 -9598885 - MER5A DNA MER1_type -122 67 31 213 289 92 0 chr15 91781668 91781744 -9598777 + MIR SINE MIR 77 159 -103 409 208 56 62 chr15 91781782 91781960 -9598561 - MER5B DNA MER1_type 0 178 2 378 261 78 0 chr15 91782033 91782148 -9598373 + MER5C DNA MER1_type 1 124 -200 335 244 43 61 chr15 91782345 91782383 -9598138 - MIR SINE MIR -64 198 161 2363 80 0 0 chr15 91782383 91782685 -9597836 - AluY SINE Alu -9 302 1 335 244 43 61 chr15 91782685 91782761 -9597760 - MIR SINE MIR -101 161 86 966 218 92 37 chr15 91782780 91783051 -9597470 + MER45C DNA AcHobo 2 287 -666 895 219 143 24 chr15 91783114 91783324 -9597197 + MER45C DNA AcHobo 719 953 0 2025 100 55 0 chr15 91783337 91783628 -9596893 - AluSx SINE Alu -4 308 2 271 194 14 27 chr15 91783941 91784011 -9596510 + MIR SINE MIR 8 64 -144 2485 52 0 3 chr15 91784011 91784321 -9596200 - AluY SINE Alu -2 309 1 271 194 14 27 chr15 91784321 91784401 -9596120 + MIR SINE MIR 64 144 -64 527 281 185 0 chr15 91784473 91784619 -9595902 + MER5A DNA MER1_type 16 188 -1 213 215 129 43 chr15 91785026 91785119 -9595402 + L2 LINE L2 3168 3268 -4 2164 75 17 3 chr15 91785459 91785751 -9594770 + AluSq SINE Alu 1 296 -17 526 136 226 39 chr15 91785803 91785958 -9594563 - MER5A DNA MER1_type -4 185 2 235 304 54 54 chr15 91785974 91786198 -9594323 - L2 LINE L2 -145 3127 2904 492 295 138 19 chr15 91786207 91786417 -9594104 - MLT1J LTR MaLR -14 497 263 2138 133 141 101 chr15 91786453 91786807 -9593714 + MER44D DNA MER2_type 4 342 -2145 2211 101 0 0 chr15 91786807 91787104 -9593417 - AluY SINE Alu -14 297 1 2138 133 141 101 chr15 91787104 91787139 -9593382 + MER44D DNA MER2_type 342 374 -2113 2061 111 0 0 chr15 91787139 91787418 -9593103 - AluSx SINE Alu -33 279 1 2138 133 141 101 chr15 91787418 91787544 -9592977 + MER44D DNA MER2_type 374 596 -9 269 239 55 55 chr15 91787659 91787768 -9592753 - MLT1J LTR MaLR -378 133 25 271 284 0 49 chr15 91787991 91788093 -9592428 + CT-rich Low_complexity Low_complexity 3 99 0 2269 80 0 3 chr15 91788341 91788642 -9591879 + AluSc SINE Alu 1 300 -9 22 35 0 0 chr15 91789931 91789960 -9590561 + AT_rich Low_complexity Low_complexity 1 29 0 204 209 0 0 chr15 91790022 91790065 -9590456 + (TTCA)n Simple_repeat Simple_repeat 4 46 0 266 271 149 0 chr15 91790065 91790172 -9590349 - L2 LINE L2 0 3313 3191 457 283 20 22 chr15 91790175 91790348 -9590173 - MER20B DNA MER1_type -1 218 43 1822 148 69 37 chr15 91790471 91790629 -9589892 - MLT1B LTR MaLR 0 390 238 180 0 0 0 chr15 91790629 91790649 -9589872 + (TCC)n Simple_repeat Simple_repeat 1 20 0 1822 148 69 37 chr15 91790649 91790868 -9589653 - MLT1B LTR MaLR -152 238 1 563 260 108 68 chr15 91790967 91791263 -9589258 + LTR67 LTR ERVL 242 549 -8 289 284 88 40 chr15 91791576 91791724 -9588797 + MIR3 SINE MIR 36 190 -18 518 229 90 0 chr15 91791967 91792111 -9588410 - MER103 DNA DNA -2 164 8 1869 150 0 0 chr15 91793111 91793398 -9587123 + AluJo SINE Alu 1 287 -25 180 0 0 0 chr15 91793972 91793992 -9586529 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1884 108 4 18 chr15 91793996 91794275 -9586246 - AluSx SINE Alu -37 275 1 1107 139 6 0 chr15 91794510 91794675 -9585846 + AluSg/x SINE Alu 137 302 -10 1924 160 39 14 chr15 91794678 91795034 -9585487 - MLT1A1 LTR MaLR 0 365 1 217 299 99 83 chr15 91795090 91795404 -9585117 - L2 LINE L2 -6 3266 2948 270 0 0 0 chr15 91795685 91795715 -9584806 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2100 108 0 3 chr15 91795717 91796005 -9584516 - AluSx SINE Alu -25 287 1 352 310 98 43 chr15 91796035 91796219 -9584302 - MIR3 SINE MIR -14 194 1 2196 160 53 5 chr15 91796238 91796650 -9583871 - MSTB1 LTR MaLR 0 432 1 462 240 104 8 chr15 91796675 91796800 -9583721 + MER20 DNA MER1_type 83 219 0 297 308 67 19 chr15 91797645 91797853 -9582668 - L1ME4a LINE L1 -161 5960 5743 403 189 0 42 chr15 91797910 91798005 -9582516 - MER20 DNA MER1_type -2 217 127 248 120 100 20 chr15 91798838 91798888 -9581633 - MSTB1 LTR MaLR -264 168 115 308 222 125 44 chr15 91799237 91799369 -9581152 + MIR SINE MIR 3 145 -63 1534 160 0 108 chr15 91799614 91799808 -9580713 - AluJb SINE Alu -6 296 151 2293 86 0 13 chr15 91799808 91800123 -9580398 - AluY SINE Alu 0 311 1 1534 160 0 108 chr15 91800123 91800260 -9580261 - AluJb SINE Alu -151 151 1 264 184 220 64 chr15 91800544 91800653 -9579868 + LTR67 LTR ERVL 19 144 -413 541 283 36 55 chr15 91800909 91801238 -9579283 - L1MC4 LINE L1 0 8042 7720 597 282 44 40 chr15 91801502 91801729 -9578792 + MIR SINE MIR 12 239 -23 2009 147 0 0 chr15 91801925 91802232 -9578289 + AluJo SINE Alu 1 307 -5 473 297 113 11 chr15 91802320 91802505 -9578016 - MIR SINE MIR -22 240 37 2118 68 27 20 chr15 91802911 91803204 -9577317 - AluY SINE Alu -16 295 1 304 188 0 14 chr15 91803637 91803706 -9576815 - L1MC3 LINE L1 -232 7553 7486 2168 86 20 0 chr15 91803903 91804205 -9576316 + AluSp SINE Alu 6 313 0 275 323 0 0 chr15 91804273 91804369 -9576152 + MLT1F1 LTR MaLR 36 131 -436 2657 196 23 23 chr15 91804383 91804956 -9575565 + L1MC3 LINE L1 7213 7785 0 198 0 0 0 chr15 91805003 91805025 -9575496 + (T)n Simple_repeat Simple_repeat 1 22 0 3591 58 0 2 chr15 91805552 91806001 -9574520 - LTR7 LTR ERV1 -2 448 1 313 318 34 17 chr15 91806229 91806348 -9574173 + MIR SINE MIR 32 159 -49 2270 90 0 0 chr15 91806383 91806684 -9573837 - AluSx SINE Alu -11 301 1 194 88 0 29 chr15 91806754 91806788 -9573733 + (CCCCCA)n Simple_repeat Simple_repeat 4 36 0 2431 26 30 3 chr15 91807864 91808167 -9572354 + AluY SINE Alu 1 311 0 680 291 62 25 chr15 91808200 91808523 -9571998 + L1ME4a LINE L1 5490 5824 -297 2648 163 38 13 chr15 91808539 91808553 -9571968 + LTR32 LTR ERVL 14 26 -445 3067 148 80 0 chr15 91808553 91809066 -9571455 - MER41C LTR ERV1 0 554 1 2648 163 38 13 chr15 91809066 91809498 -9571023 + LTR32 LTR ERVL 26 471 0 264 179 89 105 chr15 91809576 91809766 -9570755 + L1ME4a LINE L1 5934 6120 -1 2354 48 0 3 chr15 91811578 91811869 -9568652 + AluY SINE Alu 3 292 -19 379 340 98 31 chr15 91811881 91812237 -9568284 + L2 LINE L2 2809 3188 -84 22 70 0 0 chr15 91812538 91812581 -9567940 + AT_rich Low_complexity Low_complexity 1 43 0 584 244 31 25 chr15 91812875 91813035 -9567486 - MIR SINE MIR -14 248 88 597 115 19 10 chr15 91813040 91813144 -9567377 - LTR37A LTR ERV1 -13 413 309 346 231 67 0 chr15 91813152 91813256 -9567265 - LTR37A LTR ERV1 -259 167 57 678 50 0 0 chr15 91813419 91813499 -9567022 - MADE1 DNA Mariner 0 80 1 204 243 185 25 chr15 91813667 91813785 -9566736 - MIR SINE MIR -50 158 33 2016 115 17 0 chr15 91814157 91814444 -9566077 + AluSx SINE Alu 2 293 -19 437 313 157 5 chr15 91814767 91814965 -9565556 + MIR SINE MIR 33 260 -2 716 218 23 11 chr15 91814966 91815140 -9565381 + MER104 DNA MER2_type 2 177 -3 2355 65 0 10 chr15 91816480 91816789 -9563732 - AluY SINE Alu -5 306 1 1060 81 0 0 chr15 91816789 91816925 -9563596 - AluSq/x SINE Alu -176 137 2 187 246 159 29 chr15 91818415 91818484 -9562037 - L2 LINE L2 -3 3269 3192 2090 185 8 8 chr15 91818712 91819101 -9561420 - MLT1B LTR MaLR 0 390 2 558 136 32 64 chr15 91819334 91819459 -9561062 + L1MB5 LINE L1 6046 6166 -8 225 0 0 0 chr15 91819465 91819490 -9561031 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2431 76 0 0 chr15 91819603 91819907 -9560614 + AluSq SINE Alu 2 305 -8 440 330 82 14 chr15 91819986 91820268 -9560253 + L1ME4a LINE L1 2110 2410 -3736 316 272 179 36 chr15 91820280 91820475 -9560046 - MIR SINE MIR -1 261 39 724 298 145 65 chr15 91820631 91821404 -9559117 + L1ME4a LINE L1 2735 3569 -2577 407 295 39 39 chr15 91821804 91822058 -9558463 + L1ME4a LINE L1 4385 4638 -1508 236 259 68 40 chr15 91822317 91822497 -9558024 + L1P5 LINE L1 5365 5553 -598 324 278 160 19 chr15 91822525 91822592 -9557929 + L1ME4a LINE L1 5588 5644 -477 405 0 0 0 chr15 91822592 91822637 -9557884 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 324 278 160 19 chr15 91822637 91823037 -9557484 + L1ME4a LINE L1 5644 6121 0 1461 172 57 0 chr15 91823106 91823418 -9557103 + AluJb SINE Alu 1 312 0 338 262 98 67 chr15 91823575 91823790 -9556731 + L1ME4a LINE L1 5263 5477 -688 320 213 0 64 chr15 91823840 91823934 -9556587 + L1ME4a LINE L1 5962 6049 -72 216 239 211 46 chr15 91824504 91824613 -9555908 - L3 LINE CR1 -182 1395 1269 465 268 148 40 chr15 91824613 91824863 -9555658 - L1ME4a LINE L1 -25 6096 5820 2206 88 0 0 chr15 91824875 91825184 -9555337 - AluSx SINE Alu 0 309 1 231 213 93 13 chr15 91825265 91825340 -9555181 + MIR SINE MIR 164 244 -18 2304 64 0 0 chr15 91825625 91825942 -9554579 + AluY SINE Alu 1 317 0 2240 88 0 0 chr15 91826577 91826873 -9553648 - AluSg SINE Alu -14 296 1 703 254 18 118 chr15 91827222 91827494 -9553027 + MIR SINE MIR 1 245 -17 258 339 49 44 chr15 91827496 91827679 -9552842 - MIR SINE MIR -74 188 5 207 270 0 48 chr15 91829102 91829165 -9551356 + MIR3 SINE MIR 148 207 -1 186 341 91 23 chr15 91829265 91829397 -9551124 + MIR SINE MIR 111 251 -11 1196 105 0 21 chr15 91830325 91830515 -9550006 - L1MA4A LINE L1 -2 6301 6116 2336 71 13 6 chr15 91830515 91830826 -9549695 + AluSp SINE Alu 1 313 0 4190 97 0 3 chr15 91830846 91831423 -9549098 + L1PB1 LINE L1 5577 6151 0 1924 135 64 3 chr15 91831439 91831765 -9548756 - L1MA4A LINE L1 -176 6127 5782 248 306 47 12 chr15 91833019 91833104 -9547417 - MIR SINE MIR -115 147 60 1504 225 31 0 chr15 91833188 91833508 -9547013 - MER58B DNA MER1_type -2 339 10 2170 124 0 0 chr15 91833600 91833906 -9546615 + AluSx SINE Alu 1 306 -6 2342 54 3 42 chr15 91833906 91834219 -9546302 + AluY SINE Alu 1 301 -10 201 147 0 0 chr15 91834521 91834555 -9545966 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 246 297 0 0 chr15 91835019 91835083 -9545438 + MIR SINE MIR 87 150 -112 213 294 0 44 chr15 91835834 91835902 -9544619 - MIR SINE MIR -188 74 10 180 243 0 0 chr15 91836330 91836367 -9544154 + MIR SINE MIR 152 188 -74 2090 123 3 0 chr15 91836435 91836743 -9543778 - AluSx SINE Alu -3 309 1 1733 172 0 7 chr15 91836783 91837086 -9543435 + AluJb SINE Alu 7 307 -5 276 281 184 26 chr15 91837293 91837334 -9543187 + MIR SINE MIR 104 137 -125 1884 117 57 0 chr15 91837334 91837615 -9542906 - AluSx SINE Alu -15 297 1 276 281 184 26 chr15 91837615 91837687 -9542834 + MIR SINE MIR 137 235 -27 254 229 0 8 chr15 91839288 91839406 -9541115 + (TG)n Simple_repeat Simple_repeat 1 117 0 387 285 89 8 chr15 91839525 91839648 -9540873 - MIR SINE MIR -70 192 60 677 203 26 4 chr15 91840751 91840995 -9539526 + CT-rich Low_complexity Low_complexity 1 249 0 540 296 83 62 chr15 91841276 91842061 -9538460 - L2 LINE L2 -45 3268 2455 2417 153 25 46 chr15 91842061 91842353 -9538168 - MLT1C LTR MaLR 0 467 187 2390 67 3 10 chr15 91842353 91842666 -9537855 - AluY SINE Alu 0 311 1 2417 153 25 46 chr15 91842666 91842850 -9537671 - MLT1C LTR MaLR -280 187 1 540 296 83 62 chr15 91842850 91842996 -9537525 - L2 LINE L2 -858 2455 2313 * 626 343 134 32 chr15 91842991 91843125 -9537396 - L2 LINE L2 0 3272 3153 2179 137 129 5 chr15 91843125 91843506 -9537015 + MSTA LTR MaLR 1 428 0 626 343 134 32 chr15 91843506 91844301 -9536220 - L2 LINE L2 -119 3153 2248 367 310 87 35 chr15 91844366 91844595 -9535926 - L2 LINE L2 -1801 1513 1273 201 315 0 0 chr15 91844680 91844734 -9535787 + (CATA)n Simple_repeat Simple_repeat 4 57 0 2173 73 0 7 chr15 91845462 91845775 -9534746 - AluY SINE Alu 0 311 1 403 284 0 17 chr15 91845813 91845929 -9534592 - MIR SINE MIR -146 116 3 232 286 102 20 chr15 91846848 91846946 -9533575 + MIR SINE MIR 40 145 -117 182 274 107 12 chr15 91847337 91847421 -9533100 + L2 LINE L2 1435 1526 -1788 2570 42 0 0 chr15 91847932 91848238 -9532283 + AluY SINE Alu 1 306 -5 626 203 30 8 chr15 91848338 91848471 -9532050 - MIR SINE MIR -20 242 107 184 167 95 24 chr15 91848682 91848724 -9531797 + L2 LINE L2 3264 3308 -5 183 80 0 0 chr15 91848834 91848859 -9531662 + (A)n Simple_repeat Simple_repeat 1 25 0 297 356 83 19 chr15 91849935 91850140 -9530381 + L2 LINE L2 2854 3071 -201 598 307 18 6 chr15 91850217 91850380 -9530141 + MIR SINE MIR 47 211 -51 1366 246 79 36 chr15 91850384 91850827 -9529694 + MLT1C LTR MaLR 6 467 0 282 312 80 43 chr15 91850893 91851031 -9529490 + L2 LINE L2 3109 3251 -21 240 340 66 9 chr15 91851578 91851684 -9528837 - MIR SINE MIR -128 134 23 964 264 84 20 chr15 91851731 91852087 -9528434 - L1MEc LINE L1 -4454 1942 1564 23 33 0 0 chr15 91852090 91852120 -9528401 + AT_rich Low_complexity Low_complexity 1 30 0 2245 71 7 3 chr15 91852192 91852489 -9528032 + AluY SINE Alu 1 298 -13 40 0 0 0 chr15 91852594 91852634 -9527887 + AT_rich Low_complexity Low_complexity 1 40 0 632 245 31 138 chr15 91853677 91854004 -9526517 + MER102b DNA MER1_type 1 292 -49 1307 77 0 0 chr15 91854088 91854280 -9526241 + AluSg/x SINE Alu 131 312 0 496 273 169 7 chr15 91854647 91854801 -9525720 + MER5A DNA MER1_type 10 188 -1 805 196 13 6 chr15 91854810 91854968 -9525553 + MER5B DNA MER1_type 1 159 -19 542 274 17 23 chr15 91854990 91855165 -9525356 + MER5B DNA MER1_type 5 178 0 227 391 73 0 chr15 91855308 91855418 -9525103 + L2 LINE L2 3145 3262 -10 4082 96 11 40 chr15 91855456 91855930 -9524591 + MER4A LTR ERV1 1 487 -113 2209 105 0 3 chr15 91855930 91856234 -9524287 + AluSg SINE Alu 1 303 -7 2270 78 7 0 chr15 91856242 91856549 -9523972 + AluY SINE Alu 1 309 -2 4082 96 11 40 chr15 91856549 91856683 -9523838 + MER4A LTR ERV1 494 600 0 262 302 70 16 chr15 91856710 91856839 -9523682 - L2 LINE L2 -615 2699 2564 2150 125 98 24 chr15 91856914 91857102 -9523419 - MLT1C LTR MaLR -62 405 232 342 0 0 0 chr15 91857102 91857140 -9523381 + (TG)n Simple_repeat Simple_repeat 1 38 0 2150 125 98 24 chr15 91857140 91857213 -9523308 - MLT1C LTR MaLR -235 232 166 3407 192 56 25 chr15 91857213 91857737 -9522784 - MER50 LTR ERV1 0 734 181 2164 86 0 52 chr15 91857737 91858064 -9522457 + AluSg SINE Alu 1 310 0 3407 192 56 25 chr15 91858064 91858251 -9522270 - MER50 LTR ERV1 -553 181 1 2150 125 98 24 chr15 91858251 91858365 -9522156 - MLT1C LTR MaLR -301 166 1 2394 43 13 3 chr15 91860086 91860385 -9520136 + AluY SINE Alu 1 302 -9 184 289 79 0 chr15 91862004 91862080 -9518441 + MIR SINE MIR 110 191 -71 1849 80 0 8 chr15 91862501 91862750 -9517771 - L1PB1 LINE L1 0 6151 5905 815 181 88 74 chr15 91863544 91863760 -9516761 + MER20 DNA MER1_type 1 219 0 2440 64 0 0 chr15 91863944 91864255 -9516266 + AluY SINE Alu 1 311 0 27 0 0 0 chr15 91864255 91864282 -9516239 + AT_rich Low_complexity Low_complexity 1 27 0 241 0 0 32 chr15 91864342 91864373 -9516148 + L1MC1 LINE L1 6286 6315 -18 1040 151 5 19 chr15 91864669 91864875 -9515646 - L1MA4 LINE L1 0 6300 6098 213 311 39 72 chr15 91865004 91865022 -9515499 + MIR3 SINE MIR 28 45 -163 1607 211 0 0 chr15 91865022 91865326 -9515195 - AluJb SINE Alu -8 304 1 213 311 39 72 chr15 91865326 91865487 -9515034 + MIR3 SINE MIR 45 201 -7 395 241 101 54 chr15 91866213 91866422 -9514099 + MLT1H LTR MaLR 331 547 -2 2197 101 3 0 chr15 91866600 91866906 -9513615 - AluSg SINE Alu -3 307 1 570 309 37 37 chr15 91868258 91868504 -9512017 - MIR SINE MIR -6 256 11 462 207 25 50 chr15 91868950 91869071 -9511450 + MLT1J2 LTR MaLR 329 446 -4 1784 91 28 0 chr15 91869409 91869662 -9510859 + AluSp SINE Alu 44 303 -10 3864 125 62 7 chr15 91870338 91870458 -9510063 - MER41B LTR ERV1 0 635 523 1987 112 16 26 chr15 91870458 91870770 -9509751 + AluSg1 SINE Alu 1 309 0 3864 125 62 7 chr15 91870770 91871251 -9509270 - MER41B LTR ERV1 -112 523 1 491 209 94 113 chr15 91871616 91871800 -9508721 + LTR15 LTR ERV1 113 299 -194 2330 66 0 0 chr15 91871800 91872087 -9508434 + AluY SINE Alu 3 289 -22 491 209 94 113 chr15 91872087 91872284 -9508237 + LTR15 LTR ERV1 299 487 -6 1687 88 22 0 chr15 91872291 91872517 -9508004 + L1PA12 LINE L1 5788 6018 -150 967 153 10 74 chr15 91872578 91872744 -9507777 - MER20 DNA MER1_type -5 214 62 2457 55 0 7 chr15 91872744 91873053 -9507468 + AluY SINE Alu 1 307 -4 967 153 10 74 chr15 91873053 91873089 -9507432 - MER20 DNA MER1_type -157 62 25 878 204 164 0 chr15 91873101 91873375 -9507146 - MER33 DNA MER1_type 0 324 6 216 0 0 0 chr15 91873445 91873469 -9507052 + (T)n Simple_repeat Simple_repeat 1 24 0 301 327 8 28 chr15 91874147 91874288 -9506233 - MIR SINE MIR -32 176 38 2083 108 7 3 chr15 91874327 91874622 -9505899 - AluSx SINE Alu -16 296 1 508 209 9 0 chr15 91874704 91874814 -9505707 - L1MD3 LINE L1 -8 7987 7877 2105 104 3 7 chr15 91874819 91875126 -9505395 + AluY SINE Alu 1 306 -5 290 141 0 16 chr15 91875621 91875685 -9504836 + (TG)n Simple_repeat Simple_repeat 2 64 0 369 242 138 48 chr15 91876841 91877064 -9503457 + MIR SINE MIR 3 256 -6 1900 98 52 3 chr15 91877326 91877612 -9502909 + AluSc SINE Alu 1 300 -9 2269 85 0 3 chr15 91878097 91878392 -9502129 + AluY SINE Alu 1 294 -17 263 250 219 31 chr15 91878929 91879025 -9501496 + L3 LINE CR1 1348 1461 -116 251 260 53 71 chr15 91879088 91879231 -9501290 + MER5B DNA MER1_type 5 149 -29 219 227 40 13 chr15 91879415 91879490 -9501031 + CT-rich Low_complexity Low_complexity 5 81 0 246 323 15 0 chr15 91880010 91880075 -9500446 - L2 LINE L2 0 3272 3207 2374 65 0 7 chr15 91880394 91880702 -9499819 - AluY SINE Alu -5 306 1 191 359 135 6 chr15 91880783 91880953 -9499568 + MIR SINE MIR 66 257 -5 2455 45 0 6 chr15 91880960 91881272 -9499249 + AluY SINE Alu 1 310 -1 2382 53 0 3 chr15 91881322 91881621 -9498900 + AluY SINE Alu 1 298 -13 2280 67 0 13 chr15 91881752 91882066 -9498455 + AluY SINE Alu 1 310 -1 1886 171 52 42 chr15 91883091 91883477 -9497044 - MLT1B LTR MaLR 0 390 1 290 253 0 11 chr15 91883768 91883863 -9496658 + (CA)n Simple_repeat Simple_repeat 2 95 0 450 140 30 0 chr15 91886135 91886235 -9494286 + GA-rich Low_complexity Low_complexity 2 104 0 1160 179 0 42 chr15 91886353 91886565 -9493956 - Tigger7 DNA MER2_type -501 204 2 201 273 0 39 chr15 91887302 91887379 -9493142 + GA-rich Low_complexity Low_complexity 2 75 0 201 328 127 31 chr15 91887435 91887664 -9492857 - MIR SINE MIR -4 258 8 233 247 101 11 chr15 91888184 91888273 -9492248 - MIR SINE MIR -74 188 92 571 195 39 0 chr15 91888595 91888723 -9491798 - L1MB8 LINE L1 0 6178 6046 603 271 115 9 chr15 91888887 91889163 -9491358 - L1ME4a LINE L1 -248 5916 5601 22 0 0 0 chr15 91889238 91889260 -9491261 + AT_rich Low_complexity Low_complexity 1 22 0 542 328 78 40 chr15 91889965 91890337 -9490184 - MLT1K LTR MaLR 0 588 203 2315 106 0 0 chr15 91890521 91890823 -9489698 - AluY SINE Alu -9 302 1 264 239 28 83 chr15 91890825 91890934 -9489587 - MLT1K LTR MaLR -376 212 110 1192 134 15 48 chr15 91891078 91891203 -9489318 - MER2 DNA MER2_type 0 345 217 2359 83 0 0 chr15 91891203 91891493 -9489028 + AluSg SINE Alu 1 290 -20 1192 134 15 48 chr15 91891493 91891646 -9488875 - MER2 DNA MER2_type -128 217 1 3810 89 39 13 chr15 91892066 91892606 -9487915 + MER41A LTR ERV1 1 554 0 208 175 25 0 chr15 91893378 91893418 -9487103 + GA-rich Low_complexity Low_complexity 1 41 0 3593 175 104 6 chr15 91894291 91894990 -9485531 + Charlie1 DNA MER1_type 1855 2643 -118 2398 80 0 3 chr15 91894990 91895292 -9485229 + AluY SINE Alu 5 305 -6 3593 175 104 6 chr15 91895292 91895387 -9485134 + Charlie1 DNA MER1_type 2643 2727 -34 510 300 65 53 chr15 91895425 91895765 -9484756 + L1M4 LINE L1 5259 5606 -572 2353 74 43 0 chr15 91895765 91896064 -9484457 - AluSp SINE Alu -1 312 1 510 300 65 53 chr15 91896064 91896120 -9484401 + L1M4 LINE L1 5606 5660 -518 1813 194 81 21 chr15 91896407 91896840 -9483681 - MLT1C LTR MaLR 0 467 9 234 0 0 0 chr15 91897097 91897123 -9483398 + (T)n Simple_repeat Simple_repeat 1 26 0 1270 123 0 0 chr15 91897123 91897294 -9483227 + AluSg/x SINE Alu 141 311 -1 443 354 13 18 chr15 91897295 91897521 -9483000 + L1MEd LINE L1 870 1094 -5436 304 264 95 62 chr15 91897589 91897952 -9482569 + L1MEd LINE L1 2441 2818 -3722 340 298 161 20 chr15 91897974 91898131 -9482390 + L1M4 LINE L1 3896 4029 -2117 2235 111 0 3 chr15 91898131 91898437 -9482084 - AluSx SINE Alu -7 305 1 340 298 161 20 chr15 91898437 91899022 -9481499 + L1M4 LINE L1 4029 4763 -1383 191 268 85 37 chr15 91899775 91899857 -9480664 + MIR SINE MIR 64 149 -59 26 0 0 0 chr15 91900771 91900797 -9479724 + AT_rich Low_complexity Low_complexity 1 26 0 2203 109 6 12 chr15 91900797 91901126 -9479395 - L1PB1 LINE L1 0 6151 5825 575 155 207 0 chr15 91901413 91901529 -9478992 - AluJb SINE Alu -171 141 2 207 0 0 0 chr15 91901651 91901674 -9478847 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 218 289 0 0 chr15 91901870 91901922 -9478599 - L2 LINE L2 -227 3045 2994 1552 219 64 42 chr15 91903005 91903458 -9477063 + MLT1C LTR MaLR 5 467 0 211 268 70 0 chr15 91903550 91903621 -9476900 + MIR3 SINE MIR 111 186 -22 339 314 43 43 chr15 91904217 91904424 -9476097 + L3 LINE CR1 1369 1575 -2 306 0 0 0 chr15 91904775 91904809 -9475712 + (CA)n Simple_repeat Simple_repeat 2 35 0 375 23 0 0 chr15 91904809 91904853 -9475668 + (GA)n Simple_repeat Simple_repeat 1 44 0 207 287 0 115 chr15 91905392 91905443 -9475078 - MIR3 SINE MIR -12 196 165 2577 50 3 0 chr15 91905443 91905745 -9474776 - AluY SINE Alu -8 303 1 207 287 0 115 chr15 91905745 91905815 -9474706 - MIR3 SINE MIR -43 165 89 549 203 0 130 chr15 91906749 91906811 -9473710 - MER5B DNA MER1_type -2 176 108 2214 115 0 10 chr15 91906811 91907115 -9473406 + AluSp SINE Alu 1 301 -12 1844 162 14 0 chr15 91907123 91907419 -9473102 + AluJb SINE Alu 1 300 -12 549 203 0 130 chr15 91907419 91907539 -9472982 - MER5B DNA MER1_type -77 101 10 212 225 75 50 chr15 91907549 91907629 -9472892 + MIR SINE MIR 163 244 -18 1078 104 33 33 chr15 91908423 91908606 -9471915 - L1MA5A LINE L1 -86 6211 6029 295 152 65 43 chr15 91908600 91908692 -9471829 + L1MA5A LINE L1 6205 6298 -2 * 2349 65 26 33 chr15 91910841 91911148 -9469373 + AluY SINE Alu 1 305 -6 283 254 0 76 chr15 91912338 91912456 -9468065 + MER46C DNA MER2_type 1 109 -229 2538 30 0 13 chr15 91912865 91913167 -9467354 + AluY SINE Alu 1 298 -13 23 0 0 0 chr15 91913206 91913229 -9467292 + AT_rich Low_complexity Low_complexity 1 23 0 14448 49 7 0 chr15 91913332 91915755 -9464766 - L1PA5 LINE L1 -136 6018 3578 1961 118 0 21 chr15 91915857 91916003 -9464518 - AluSx SINE Alu -36 276 137 2378 89 3 0 chr15 91916003 91916307 -9464214 - AluSg SINE Alu -5 305 1 1961 118 0 21 chr15 91916307 91916440 -9464081 - AluSx SINE Alu -175 137 3 315 190 0 0 chr15 91916967 91917025 -9463496 + MER46C DNA MER2_type 281 338 0 1635 163 46 54 chr15 91917604 91917972 -9462549 - MLT1A1 LTR MaLR 0 365 1 262 154 0 0 chr15 91918139 91918178 -9462343 - AluSq SINE Alu -139 164 126 480 104 0 0 chr15 91918178 91918255 -9462266 - Alu SINE Alu 0 309 233 417 212 35 0 chr15 91918690 91918775 -9461746 + ORSL DNA AcHobo 1 88 -187 1683 174 17 24 chr15 91918783 91919081 -9461440 + AluJb SINE Alu 1 296 -16 470 234 37 0 chr15 91919109 91919216 -9461305 + ORSL DNA AcHobo 165 275 0 38 39 0 0 chr15 91919452 91919504 -9461017 + AT_rich Low_complexity Low_complexity 1 52 0 28261 58 3 1 chr15 91919659 91923181 -9457340 - L1P LINE L1 -2605 3541 11 317 80 0 20 chr15 91923249 91923299 -9457222 + (TG)n Simple_repeat Simple_repeat 2 50 0 1248 222 33 52 chr15 91923303 91923609 -9456912 - AluJo SINE Alu -12 300 1 22 94 0 0 chr15 91924135 91924199 -9456322 + AT_rich Low_complexity Low_complexity 1 64 0 2220 131 0 0 chr15 91924350 91924663 -9455858 + AluSq SINE Alu 1 313 0 517 321 42 21 chr15 91924673 91924913 -9455608 + L1M4 LINE L1 2 246 -6296 611 117 0 43 chr15 91925130 91925224 -9455297 - AluSq SINE Alu -151 162 73 486 73 0 0 chr15 91925220 91925288 -9455233 - AluY SINE Alu -17 295 228 * 1962 39 4 4 chr15 91925936 91926169 -9454352 - AluY SINE Alu -78 233 1 204 40 0 0 chr15 91926225 91926250 -9454271 + (A)n Simple_repeat Simple_repeat 1 25 0 4040 128 14 20 chr15 91926782 91926901 -9453620 - MER41B LTR ERV1 0 635 517 2592 48 0 16 chr15 91926901 91927211 -9453310 + AluY SINE Alu 1 305 -6 4040 128 14 20 chr15 91927211 91927730 -9452791 - MER41B LTR ERV1 -118 517 1 242 355 32 0 chr15 91929356 91929480 -9451041 + L1ME LINE L1 5513 5640 -481 36 40 0 0 chr15 91929741 91929791 -9450730 + AT_rich Low_complexity Low_complexity 1 50 0 189 94 0 0 chr15 91929912 91929944 -9450577 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 2078 140 14 92 chr15 91930086 91930508 -9450013 + MLT1B LTR MaLR 1 389 -1 1661 105 3 147 chr15 91930661 91931014 -9449507 + AluSx SINE Alu 1 302 0 417 218 32 32 chr15 91931384 91931508 -9449013 - L2 LINE L2 -1 3271 3148 428 272 6 38 chr15 91933496 91933654 -9446867 - L2 LINE L2 -48 3265 3113 27 0 0 0 chr15 91934161 91934188 -9446333 + AT_rich Low_complexity Low_complexity 1 27 0 344 232 58 14 chr15 91934917 91935055 -9445466 + MIR SINE MIR 58 201 -61 349 278 100 45 chr15 91935352 91935733 -9444788 - L1MC5 LINE L1 -30 7931 7530 998 32 16 0 chr15 91935815 91935939 -9444582 - L1PA4 LINE L1 0 6155 6030 2527 54 0 0 chr15 91936196 91936494 -9444027 - AluY SINE Alu -13 298 1 202 355 86 26 chr15 91936606 91936758 -9443763 + MIR SINE MIR 95 255 -7 3686 113 4 47 chr15 91937582 91938133 -9442388 + MER1A DNA MER1_type 1 527 0 2831 129 171 0 chr15 91938367 91938817 -9441704 - MER1A DNA MER1_type 0 527 1 2198 112 0 37 chr15 91941456 91941777 -9438744 + AluSc SINE Alu 1 309 0 352 372 29 0 chr15 91941899 91942071 -9438450 - MIR SINE MIR -66 196 20 245 287 126 9 chr15 91942092 91942238 -9438283 - MIR3 SINE MIR -65 143 5 225 337 22 11 chr15 91943001 91943093 -9437428 + L2 LINE L2 3180 3272 0 191 216 0 0 chr15 91943255 91943292 -9437229 + MIR SINE MIR 86 122 -140 212 328 40 85 chr15 91943430 91943607 -9436914 + L2 LINE L2 2887 3055 -217 2944 87 0 0 chr15 91943662 91944017 -9436504 - THE1A LTR MaLR 0 355 1 214 350 72 0 chr15 91944064 91944161 -9436360 + L2 LINE L2 3169 3272 0 2448 69 10 0 chr15 91946528 91946832 -9433689 - AluSp SINE Alu -6 307 1 2354 138 86 43 chr15 91947808 91948250 -9432271 - LOR1b LTR ERV1 0 461 1 507 262 56 0 chr15 91948412 91948538 -9431983 + MIR SINE MIR 25 157 -105 2185 109 0 0 chr15 91948803 91949119 -9431402 + AluSx SINE Alu 1 316 0 21 36 0 0 chr15 91949136 91949164 -9431357 + AT_rich Low_complexity Low_complexity 1 28 0 823 142 0 0 chr15 91949753 91949866 -9430655 + FLAM_C SINE Alu 12 124 -19 2248 98 0 16 chr15 91949947 91950253 -9430268 - AluSx SINE Alu -11 301 1 291 341 80 7 chr15 91950256 91950394 -9430127 - MIR SINE MIR -10 252 105 1033 148 108 30 chr15 91950944 91951147 -9429374 + MER20 DNA MER1_type 1 219 0 369 0 0 0 chr15 91953863 91953904 -9426617 + (CA)n Simple_repeat Simple_repeat 2 42 0 308 288 72 9 chr15 91954111 91954222 -9426299 - MIR SINE MIR -72 190 73 2424 101 0 0 chr15 91954891 91955197 -9425324 - AluSg SINE Alu -4 306 1 285 244 70 47 chr15 91955495 91955581 -9424940 + MIR SINE MIR 12 99 -163 1797 179 3 3 chr15 91957197 91957498 -9423023 + AluJb SINE Alu 1 301 -11 247 288 99 36 chr15 91957890 91958001 -9422520 + L2 LINE L2 3141 3258 -14 2180 99 3 7 chr15 91958262 91958554 -9421967 - AluSq SINE Alu -13 300 10 2411 77 0 3 chr15 91958564 91958862 -9421659 - AluSp SINE Alu -7 306 10 2461 81 0 3 chr15 91958872 91959180 -9421341 - AluSp SINE Alu -6 307 1 198 250 0 0 chr15 91959380 91959424 -9421097 + L2 LINE L2 3262 3305 -8 5962 188 173 29 chr15 91959759 91961294 -9419227 - MER52A LTR ERV1 0 1755 1 948 174 0 0 chr15 91961319 91961468 -9419053 + Tigger2 DNA MER2_type 2570 2718 0 1296 278 126 15 chr15 91961470 91962059 -9418462 + Charlie8 DNA MER1_type 130 783 -1634 414 107 0 0 chr15 91962100 91962156 -9418365 + Alu SINE Alu 240 295 -16 6853 74 5 2 chr15 91962211 91963855 -9416666 - L1PA7 LINE L1 -45 6109 4460 405 324 65 47 chr15 91963847 91963900 -9416621 - L1ME LINE L1 -302 5819 5768 * 1828 168 10 0 chr15 91963900 91964203 -9416318 - AluSx SINE Alu -6 306 1 405 324 65 47 chr15 91964203 91964287 -9416234 - L1ME LINE L1 -353 5768 5687 189 0 0 0 chr15 91964287 91964308 -9416213 + (TG)n Simple_repeat Simple_repeat 2 22 0 405 324 65 47 chr15 91964308 91964710 -9415811 - L1ME LINE L1 -434 5687 5255 249 260 50 50 chr15 91967107 91967207 -9413314 - MER103 DNA DNA -49 117 18 265 330 29 40 chr15 91967623 91967796 -9412725 + MIR SINE MIR 43 213 -49 4590 184 28 27 chr15 91967985 91969572 -9410949 + L1MB8 LINE L1 4574 6162 -16 231 238 38 62 chr15 91969664 91969744 -9410777 + MIR SINE MIR 38 115 -93 198 0 0 0 chr15 91971464 91971486 -9409035 + (CA)n Simple_repeat Simple_repeat 2 23 0 619 221 0 24 chr15 91971610 91971737 -9408784 + L2 LINE L2 3185 3308 -5 2861 210 46 12 chr15 91971981 91972704 -9407817 + L1ME2 LINE L1 4531 5277 -869 2440 71 3 0 chr15 91972704 91973001 -9407520 - AluY SINE Alu -13 298 1 1381 210 52 21 chr15 91973005 91973333 -9407188 + L1ME2 LINE L1 5542 5879 -285 1205 247 41 9 chr15 91973377 91973693 -9406828 + L1ME2 LINE L1 5829 6154 -10 521 228 44 104 chr15 91974408 91974694 -9405827 - LTR16A1 LTR ERVL -4 453 202 2092 167 45 0 chr15 91975698 91976028 -9404493 + MER7A DNA MER2_type 1 343 -3 2236 107 3 0 chr15 91976082 91976373 -9404148 - AluSp SINE Alu -21 292 1 1740 154 4 14 chr15 91976903 91977182 -9403339 + L1MC1 LINE L1 6056 6331 -2 308 290 14 22 chr15 91977295 91977433 -9403088 + (TATATG)n Simple_repeat Simple_repeat 6 142 0 238 191 32 0 chr15 91977433 91977496 -9403025 + L1MC4 LINE L1 6652 6716 -1326 244 242 48 0 chr15 91978326 91978388 -9402133 + CT-rich Low_complexity Low_complexity 2 66 0 399 329 30 12 chr15 91978579 91978746 -9401775 + MIR SINE MIR 63 232 -30 325 240 24 24 chr15 91978772 91978896 -9401625 - MIR SINE MIR -76 132 36 2212 90 7 17 chr15 91979059 91979360 -9401161 + AluYa5 SINE Alu 1 298 -13 205 133 44 22 chr15 91980833 91980878 -9399643 - MIR SINE MIR -117 145 100 1858 115 0 0 chr15 91980921 91981174 -9399347 - AluSx SINE Alu 0 312 60 431 118 73 0 chr15 91981414 91981482 -9399039 + L1PA11 LINE L1 6100 6172 -2 204 111 0 0 chr15 91981502 91981538 -9398983 + (TG)n Simple_repeat Simple_repeat 2 37 0 216 158 0 0 chr15 91981538 91981576 -9398945 + (TA)n Simple_repeat Simple_repeat 2 39 0 943 229 51 72 chr15 91981636 91981968 -9398553 - MLT2B1 LTR ERVL -195 325 1 1720 209 16 27 chr15 91981972 91982346 -9398175 + MLT1A2 LTR MaLR 4 373 -1 224 254 0 36 chr15 91984104 91984159 -9396362 + L2 LINE L2 3218 3270 -2 329 294 14 34 chr15 91985263 91985409 -9395112 - L2 LINE L2 -219 3053 2911 245 103 0 0 chr15 91985617 91985656 -9394865 - L1ME4a LINE L1 -119 6002 5964 580 222 20 13 chr15 91986187 91986340 -9394181 + L1M4 LINE L1 5074 5227 -919 489 185 33 0 chr15 91986341 91986433 -9394088 + MER44D DNA MER2_type 3 97 -608 2293 81 0 3 chr15 91986433 91986743 -9393778 + AluSq SINE Alu 1 309 0 846 168 13 13 chr15 91986743 91986921 -9393600 + AluSg/x SINE Alu 134 311 0 2828 164 128 13 chr15 91986923 91987479 -9393042 + MER44D DNA MER2_type 85 704 -1 455 340 95 31 chr15 91988026 91988506 -9392015 - L1M4 LINE L1 -1330 4816 4275 279 0 0 0 chr15 91988506 91988537 -9391984 + (TG)n Simple_repeat Simple_repeat 2 32 0 455 340 95 31 chr15 91988537 91988761 -9391760 - L1M4 LINE L1 -1871 4275 4067 296 276 0 51 chr15 91989667 91989765 -9390756 + MER5B DNA MER1_type 1 93 -85 558 251 113 49 chr15 91990102 91990349 -9390172 + ORSL DNA AcHobo 13 275 0 8528 168 99 89 chr15 91990510 91991066 -9389455 - L1MC3 LINE L1 -20 7765 7216 276 320 0 25 chr15 91991066 91991188 -9389333 - MLT1F1 LTR MaLR -428 139 21 8528 168 99 89 chr15 91991188 91991224 -9389297 - L1MC3 LINE L1 -569 7216 7182 186 103 0 0 chr15 91991224 91991253 -9389268 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 8528 168 99 89 chr15 91991253 91991517 -9389004 - L1MC3 LINE L1 -603 7182 6922 189 0 0 0 chr15 91991517 91991538 -9388983 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 8528 168 99 89 chr15 91991538 91992894 -9387627 - L1MC3 LINE L1 -863 6922 5406 735 305 38 53 chr15 91992918 91993358 -9387163 - L1ME4a LINE L1 -239 5925 5497 1452 228 3 28 chr15 91993358 91993678 -9386843 - AluJo SINE Alu 0 312 1 735 305 38 53 chr15 91993678 91993915 -9386606 - L1ME4a LINE L1 -667 5497 5258 336 298 137 41 chr15 91993945 91994317 -9386204 - L1ME4a LINE L1 -987 5159 4757 193 306 107 25 chr15 91995672 91995793 -9384728 - MIR SINE MIR -11 251 121 263 263 33 99 chr15 91996143 91996295 -9384226 - MIR3 SINE MIR -48 160 19 902 258 22 27 chr15 91996604 91996829 -9383692 + MER58A DNA MER1_type 1 224 0 703 282 18 9 chr15 91996924 91997144 -9383377 + MIR SINE MIR 29 250 -12 21 0 0 0 chr15 91997653 91997674 -9382847 + AT_rich Low_complexity Low_complexity 1 21 0 2140 84 42 3 chr15 91997787 91998073 -9382448 - AluSc SINE Alu -12 297 1 526 221 21 14 chr15 91998073 91998213 -9382308 - MIR SINE MIR -47 215 75 201 291 90 22 chr15 91998886 91999020 -9381501 - MIR SINE MIR -33 229 87 971 272 100 22 chr15 92000722 92001093 -9379428 - MLT1I LTR MaLR -4 405 6 453 287 93 56 chr15 92001629 92002005 -9378516 - L1ME4a LINE L1 -2752 3394 3005 2006 153 20 55 chr15 92002486 92002656 -9377865 + L1PB4 LINE L1 5767 5941 -215 2627 58 0 3 chr15 92002656 92002968 -9377553 + AluY SINE Alu 1 311 0 2006 153 20 55 chr15 92002968 92003201 -9377320 + L1PB4 LINE L1 5941 6156 0 31 0 0 0 chr15 92003235 92003266 -9377255 + AT_rich Low_complexity Low_complexity 1 31 0 431 314 39 57 chr15 92003288 92003676 -9376845 - L1ME4a LINE L1 -3619 2527 2147 2360 98 3 0 chr15 92004168 92004475 -9376046 - AluSc SINE Alu -1 308 1 216 0 0 0 chr15 92004814 92004838 -9375683 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 338 194 87 48 chr15 92005053 92005156 -9375365 - L1ME2 LINE L1 -49 6115 6009 828 174 116 7 chr15 92005158 92005313 -9375208 - MER20 DNA MER1_type -47 172 1 2087 193 67 3 chr15 92005313 92005930 -9374591 - L1ME3 LINE L1 -129 6033 5359 410 138 67 18 chr15 92005911 92006031 -9374490 + L1ME3 LINE L1 5225 5359 -805 * 702 194 79 29 chr15 92006113 92006356 -9374165 - MIR SINE MIR -21 241 9 253 91 0 0 chr15 92006878 92006911 -9373610 + THE1C LTR MaLR 1 33 -342 10337 62 10 0 chr15 92006914 92009024 -9371497 - L1PA6 LINE L1 0 6154 4036 2248 116 48 3 chr15 92009024 92009361 -9371160 + THE1A LTR MaLR 4 355 0 11740 81 14 21 chr15 92009361 92010951 -9369570 + THE1A-int LTR MaLR 1 1580 0 2696 93 3 0 chr15 92010951 92011305 -9369216 + THE1A LTR MaLR 1 355 0 261 224 0 0 chr15 92011580 92011629 -9368892 - L2 LINE L2 -5 3267 3219 2278 114 0 0 chr15 92012492 92012789 -9367732 + AluSx SINE Alu 1 297 -15 282 56 0 0 chr15 92013612 92013648 -9366873 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1644 122 0 4 chr15 92013648 92013877 -9366644 - AluSx SINE Alu -33 279 52 593 263 0 0 chr15 92014173 92014310 -9366211 + MIR SINE MIR 20 156 -106 329 305 179 13 chr15 92014320 92014379 -9366142 - MER5A DNA MER1_type -2 187 139 2290 95 0 3 chr15 92014379 92014674 -9365847 + AluSq SINE Alu 2 295 -18 329 305 179 13 chr15 92014674 92014765 -9365756 - MER5A DNA MER1_type -50 139 12 202 262 36 24 chr15 92014784 92014868 -9365653 + MIR SINE MIR 170 254 -8 198 103 0 0 chr15 92015457 92015486 -9365035 + (A)n Simple_repeat Simple_repeat 1 29 0 2243 76 3 33 chr15 92015881 92016182 -9364339 - AluSg1 SINE Alu -17 292 1 188 167 0 0 chr15 92016333 92016369 -9364152 + L2 LINE L2 3264 3299 -14 228 111 0 0 chr15 92016370 92016406 -9364115 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1820 169 16 90 chr15 92016522 92016967 -9363554 - MER101B LTR ERV1 -136 434 23 499 209 0 0 chr15 92017490 92017581 -9362940 - MER101 LTR ERV1 -157 317 227 253 259 0 0 chr15 92018024 92018078 -9362443 - L2 LINE L2 -86 3186 3133 273 258 15 53 chr15 92018715 92018847 -9361674 - MIR3 SINE MIR -32 176 50 201 62 0 0 chr15 92019226 92019258 -9361263 - MIR SINE MIR -123 139 108 3997 162 26 40 chr15 92019759 92020555 -9359966 - LTR1 LTR ERV1 0 785 1 556 240 0 16 chr15 92022640 92022769 -9357752 - L1PB4 LINE L1 -7 6149 6023 246 260 181 24 chr15 92022987 92023114 -9357407 + L2 LINE L2 3121 3267 -5 2067 117 52 43 chr15 92024609 92024978 -9355543 + THE1C LTR MaLR 4 375 0 180 111 0 0 chr15 92025055 92025082 -9355439 + (CA)n Simple_repeat Simple_repeat 1 27 0 315 0 0 0 chr15 92025488 92025523 -9354998 + (CA)n Simple_repeat Simple_repeat 1 35 0 517 50 0 0 chr15 92026186 92026246 -9354275 - 5S rRNA rRNA -29 92 33 367 279 143 82 chr15 92027732 92028109 -9352412 + L2 LINE L2 2873 3272 0 225 108 0 0 chr15 92029360 92029397 -9351124 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 291 227 52 52 chr15 92029398 92029495 -9351026 - L2 LINE L2 -16 3256 3160 302 310 63 74 chr15 92029537 92029808 -9350713 - L2 LINE L2 -424 2890 2623 2112 103 0 44 chr15 92030575 92030894 -9349627 + AluSq SINE Alu 1 305 -8 405 230 54 47 chr15 92030990 92031138 -9349383 + MIR SINE MIR 93 241 -21 227 405 0 8 chr15 92031386 92031507 -9349014 - L2 LINE L2 -17 3255 3136 269 282 34 51 chr15 92031715 92031832 -9348689 + MIR SINE MIR 77 191 -71 1390 129 15 0 chr15 92032016 92032218 -9348303 - MER4B LTR ERV1 0 610 406 184 313 16 0 chr15 92032266 92032330 -9348191 - L2 LINE L2 -214 3058 2994 257 253 33 44 chr15 92033810 92033901 -9346620 + L1 LINE L1 4531 4620 -1526 373 298 94 50 chr15 92034771 92035090 -9345431 - L2 LINE L2 -41 3272 2940 252 242 145 8 chr15 92035090 92035214 -9345307 - MER97a DNA MER1_type? 0 894 754 2551 58 3 6 chr15 92035891 92036203 -9344318 - AluY SINE Alu 0 311 1 21 0 0 0 chr15 92037185 92037206 -9343315 + AT_rich Low_complexity Low_complexity 1 21 0 7855 23 0 0 chr15 92037206 92038400 -9342121 - L1PA2 LINE L1 -1 6154 4961 321 210 171 54 chr15 92038662 92038867 -9341654 - MER97a DNA MER1_type? -123 771 543 837 136 51 25 chr15 92038867 92039136 -9341385 - MLT1A1 LTR MaLR -11 363 1 843 189 19 97 chr15 92039136 92039342 -9341179 - MER97b DNA MER1_type? -499 554 365 202 231 0 0 chr15 92039363 92039402 -9341119 + (TG)n Simple_repeat Simple_repeat 2 40 0 2230 97 3 19 chr15 92039990 92040300 -9340221 - AluSx SINE Alu -7 305 1 2424 117 30 38 chr15 92042587 92042954 -9337567 - THE1B LTR MaLR 0 364 1 899 178 67 143 chr15 92042995 92043366 -9337155 + MLT1A1 LTR MaLR 23 365 0 2218 119 0 10 chr15 92043577 92043887 -9336634 - AluSx SINE Alu -5 307 1 405 0 0 0 chr15 92043958 92044003 -9336518 + (TG)n Simple_repeat Simple_repeat 1 45 0 327 347 107 36 chr15 92045050 92045358 -9335163 + L1 LINE L1 4736 5065 -1081 405 312 116 50 chr15 92045483 92046128 -9334393 + L1MEd LINE L1 4 723 -5396 222 91 0 0 chr15 92046128 92046161 -9334360 + (CA)n Simple_repeat Simple_repeat 2 34 0 405 312 116 50 chr15 92046161 92046383 -9334138 + L1MEd LINE L1 723 929 -5190 654 328 35 11 chr15 92046412 92046696 -9333825 + L1MD3 LINE L1 37 327 -6069 3738 143 38 3 chr15 92046705 92047284 -9333237 + MER6A DNA MER2_type 2 600 -5 2132 265 37 36 chr15 92047295 92048109 -9332412 + L1MD3 LINE L1 346 1160 -5236 7718 241 96 34 chr15 92048208 92049358 -9331163 + L1MD3 LINE L1 1859 2937 -3466 2396 176 5 0 chr15 92049358 92049744 -9330777 + MLT1B LTR MaLR 1 388 -2 7718 241 96 34 chr15 92049744 92052805 -9327716 + L1MD3 LINE L1 2937 6401 -2 245 225 123 43 chr15 92052796 92052934 -9327587 + L1MEd LINE L1 943 1091 -5028 * 469 283 86 56 chr15 92053018 92053216 -9327305 + L1MEd LINE L1 1167 1358 -4771 1613 152 61 11 chr15 92053216 92053493 -9327028 + AluJo SINE Alu 11 301 -11 469 283 86 56 chr15 92053493 92053551 -9326970 + L1MEd LINE L1 1358 1413 -4716 2044 109 28 0 chr15 92053551 92053835 -9326686 - L1PA11 LINE L1 -3 6171 5880 469 283 86 56 chr15 92053835 92054111 -9326410 + L1MEd LINE L1 1413 1616 -4513 2599 59 0 0 chr15 92054111 92054415 -9326106 + AluY SINE Alu 1 304 -7 469 283 86 56 chr15 92054415 92054432 -9326089 + L1MEd LINE L1 1616 1631 -4498 556 290 126 8 chr15 92054526 92054788 -9325733 + L1ME3A LINE L1 5654 5946 -224 1966 183 193 0 chr15 92055470 92055901 -9324620 - MLT2B1 LTR ERVL -6 514 1 29 0 0 0 chr15 92056019 92056048 -9324473 + AT_rich Low_complexity Low_complexity 1 29 0 1567 183 81 12 chr15 92056079 92056401 -9324120 + MER2 DNA MER2_type 1 344 0 276 355 6 35 chr15 92057487 92057656 -9322865 - L1M4 LINE L1 -1949 4197 4034 388 278 244 10 chr15 92057751 92057960 -9322561 - MIR SINE MIR -3 259 2 479 234 10 93 chr15 92058046 92058251 -9322270 - L1M4 LINE L1 -2196 3950 3763 235 160 0 60 chr15 92059713 92059763 -9320758 + MIR SINE MIR 122 168 -94 270 179 0 0 chr15 92059776 92059832 -9320689 + (TATG)n Simple_repeat Simple_repeat 4 59 0 247 163 0 0 chr15 92059834 92059877 -9320644 + L1MC4 LINE L1 6658 6700 -1342 328 213 0 13 chr15 92060112 92060187 -9320334 - L1MCa LINE L1 -4358 2068 1995 1904 154 34 0 chr15 92060226 92060524 -9319997 - AluJb SINE Alu -4 308 1 245 292 0 0 chr15 92061278 92061343 -9319178 + G-rich Low_complexity Low_complexity 6 70 0 2469 64 0 7 chr15 92061481 92061778 -9318743 - AluSc SINE Alu -14 295 1 477 317 18 12 chr15 92062346 92062510 -9318011 - MIR SINE MIR -14 248 84 997 200 50 59 chr15 92063646 92063866 -9316655 - MER20 DNA MER1_type 0 219 2 2526 53 3 0 chr15 92063898 92064199 -9316322 - AluY SINE Alu -9 302 1 346 328 25 0 chr15 92064199 92064321 -9316200 + MIR SINE MIR 57 181 -81 395 306 28 14 chr15 92065497 92065641 -9314880 + MIR SINE MIR 82 227 -35 1341 89 0 0 chr15 92066358 92066526 -9313995 - AluSc SINE Alu -9 300 133 2130 107 20 3 chr15 92066527 92066827 -9313694 - AluSp SINE Alu -8 305 1 908 132 20 113 chr15 92067974 92068178 -9312343 + MER53 DNA DNA 5 189 0 868 183 21 70 chr15 92069275 92069352 -9311169 - MER45A DNA AcHobo -1404 177 98 2425 67 0 10 chr15 92069352 92069652 -9310869 + AluY SINE Alu 1 297 -14 868 183 21 70 chr15 92069652 92069760 -9310761 - MER45A DNA AcHobo -1483 98 1 2246 94 0 19 chr15 92070305 92070614 -9309907 - AluY SINE Alu -8 303 1 1821 151 189 15 chr15 92070857 92071254 -9309267 - MLT2B1 LTR ERVL -51 469 4 225 314 73 66 chr15 92071285 92071422 -9309099 - MER5A DNA MER1_type -15 174 37 183 403 32 26 chr15 92071293 92071447 -9309074 + MER5A DNA MER1_type 35 189 0 * 305 314 0 29 chr15 92071629 92071734 -9308787 - MIR SINE MIR -91 117 16 425 285 134 12 chr15 92072807 92072979 -9307542 - MIR SINE MIR -1 261 69 1499 177 52 87 chr15 92073448 92073849 -9306672 - MLT1F1 LTR MaLR -4 563 177 207 0 0 0 chr15 92073866 92073889 -9306632 + (GA)n Simple_repeat Simple_repeat 1 23 0 403 254 148 6 chr15 92073889 92074058 -9306463 - MLT1F1 LTR MaLR -355 212 20 1482 163 112 68 chr15 92074062 92074491 -9306030 - LTR7 LTR ERV1 -2 448 1 3407 110 8 17 chr15 92074491 92075008 -9305513 - HERVH LTR ERV1 0 7713 7202 259 75 0 38 chr15 92075240 92075293 -9305228 + (TA)n Simple_repeat Simple_repeat 2 52 0 380 106 0 91 chr15 92075302 92075368 -9305153 - HERVH LTR ERV1 -497 7216 7157 346 331 110 8 chr15 92075485 92075730 -9304791 - L1ME LINE L1 -305 5816 5547 4583 116 17 8 chr15 92076039 92076677 -9303844 + LTR9B LTR ERV1 1 644 0 757 151 110 0 chr15 92076852 92076998 -9303523 - L1MB8 LINE L1 -5 6173 6012 213 189 0 0 chr15 92077065 92077113 -9303408 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 2155 80 3 40 chr15 92077113 92077412 -9303109 - AluSx SINE Alu -24 288 1 247 215 38 25 chr15 92077821 92077900 -9302621 - AluS SINE Alu -1 301 222 180 97 0 0 chr15 92178523 92178554 -9201967 + (TG)n Simple_repeat Simple_repeat 2 32 0 1087 216 41 0 chr15 92178618 92178887 -9201634 - L1MA9 LINE L1 -198 6114 5835 180 0 0 0 chr15 92178923 92178943 -9201578 + (CA)n Simple_repeat Simple_repeat 2 21 0 629 165 53 0 chr15 92178952 92179085 -9201436 + L1MA9 LINE L1 6173 6312 0 301 270 47 20 chr15 92180710 92180858 -9199663 + L1ME LINE L1 5544 5695 -426 1954 103 0 7 chr15 92181263 92181564 -9198957 + AluY SINE Alu 26 311 0 351 0 0 0 chr15 92181664 92181703 -9198818 + (CA)n Simple_repeat Simple_repeat 1 39 0 246 368 80 0 chr15 92184603 92184728 -9195793 - L2 LINE L2 -5 3267 3133 39209 45 2 2 chr15 92185882 92192045 -9188476 + L1PA4 LINE L1 1 6155 0 2090 122 3 0 chr15 92192054 92192340 -9188181 + AluY SINE Alu 1 287 -24 186 267 0 81 chr15 92194427 92194513 -9186008 + MIR3 SINE MIR 4 82 -126 296 259 211 20 chr15 92195031 92195178 -9185343 - MIR SINE MIR -16 246 72 284 284 95 20 chr15 92195521 92195642 -9184879 + MIR SINE MIR 20 149 -63 206 240 53 67 chr15 92195730 92195805 -9184716 - L2 LINE L2 -2038 1276 1203 410 276 211 0 chr15 92196545 92196730 -9183791 - MIR SINE MIR -11 251 28 2332 75 10 0 chr15 92197753 92198046 -9182475 + AluSc SINE Alu 5 300 -9 882 192 0 0 chr15 92198404 92198576 -9181945 - L1MA6 LINE L1 -12 6288 6117 21 0 0 0 chr15 92198980 92199001 -9181520 + AT_rich Low_complexity Low_complexity 1 21 0 1126 137 105 0 chr15 92199019 92199238 -9181283 - L1MA7 LINE L1 -22 6269 6028 298 233 151 0 chr15 92199997 92200070 -9180451 - MER63 DNA MER1_type 0 1060 977 337 256 0 0 chr15 92200073 92200151 -9180370 - MER63 DNA MER1_type -87 749 672 251 370 16 8 chr15 92200429 92200556 -9179965 + L2 LINE L2 3145 3272 0 2123 102 26 16 chr15 92200678 92200983 -9179538 + AluSq SINE Alu 1 308 -5 2187 111 0 0 chr15 92201482 92201803 -9178718 + AluSx SINE Alu 1 321 0 1271 129 0 0 chr15 92201804 92201982 -9178539 + AluSg/x SINE Alu 133 310 0 467 279 27 14 chr15 92201993 92202140 -9178381 + MIR SINE MIR 40 188 -74 25 65 0 0 chr15 92202155 92202201 -9178320 + AT_rich Low_complexity Low_complexity 1 46 0 2846 127 4 53 chr15 92202251 92202434 -9178087 - Tigger2a DNA MER2_type -2274 434 244 2277 106 0 0 chr15 92202434 92202726 -9177795 - AluSx SINE Alu -20 292 1 2846 127 4 53 chr15 92202726 92202998 -9177523 - Tigger2a DNA MER2_type -2464 244 1 222 273 65 13 chr15 92203027 92203104 -9177417 - MIR3 SINE MIR -11 197 117 259 179 32 53 chr15 92203139 92203234 -9177287 + T-rich Low_complexity Low_complexity 3 95 0 257 277 12 36 chr15 92203568 92203651 -9176870 - MIR SINE MIR -67 141 61 212 0 0 35 chr15 92205264 92205293 -9175228 + (CGGGGG)n Simple_repeat Simple_repeat 2 29 0 1146 198 113 91 chr15 92206008 92206361 -9174160 + MLT1A1 LTR MaLR 5 365 0 494 305 19 65 chr15 92206401 92206772 -9173749 + L1PA15 LINE L1 2 355 -7226 16451 205 24 25 chr15 92207729 92212994 -9167527 + L1PA15 LINE L1 2321 7579 -24 288 272 43 11 chr15 92213070 92213162 -9167359 - MER5B DNA MER1_type -83 95 1 286 342 68 0 chr15 92213203 92213320 -9167201 - L2 LINE L2 -1 3271 3147 2232 112 0 3 chr15 92215301 92215604 -9164917 - AluSg SINE Alu -8 302 1 1418 225 24 69 chr15 92215675 92216137 -9164384 - L1ME2 LINE L1 0 6164 5724 2036 74 0 8 chr15 92217192 92217448 -9163073 - AluSc SINE Alu -20 289 36 201 74 0 0 chr15 92218150 92218177 -9162344 + (TTATA)n Simple_repeat Simple_repeat 4 30 0 905 215 11 6 chr15 92220046 92220223 -9160298 - MER5B DNA MER1_type 0 178 1 355 188 14 0 chr15 92220343 92220412 -9160109 - MER81 DNA DNA -1 113 44 709 191 65 74 chr15 92220913 92221144 -9159377 - MER106A DNA MER1_type -5 231 3 1785 166 3 0 chr15 92221543 92221833 -9158688 + AluSx SINE Alu 7 297 -15 455 243 74 74 chr15 92222188 92222377 -9158144 - MLT1D LTR MaLR -316 189 1 777 178 18 24 chr15 92222483 92222652 -9157869 - LTR32 LTR ERVL -2 469 302 1802 176 29 0 chr15 92222745 92223058 -9157463 - LTR32 LTR ERVL -135 336 15 375 298 10 0 chr15 92223166 92223270 -9157251 - LTR33 LTR ERVL 0 521 417 375 214 12 0 chr15 92223454 92223538 -9156983 - LTR33 LTR ERVL -110 411 327 513 0 0 0 chr15 92223633 92223690 -9156831 + (CA)n Simple_repeat Simple_repeat 1 57 0 502 136 56 12 chr15 92223694 92223856 -9156665 + CT-rich Low_complexity Low_complexity 1 169 0 197 370 19 9 chr15 92224173 92224281 -9156240 + L2 LINE L2 3204 3312 -1 319 349 50 72 chr15 92224650 92225011 -9155510 - L2 LINE L2 -5 3267 2915 1396 206 70 19 chr15 92225049 92225364 -9155157 - MLT1A1 LTR MaLR -32 333 3 2309 96 0 3 chr15 92226191 92226494 -9154027 + AluSg SINE Alu 1 302 -8 327 321 82 21 chr15 92226884 92227264 -9153257 + L1M4 LINE L1 2220 2622 -3524 206 229 21 0 chr15 92227273 92227321 -9153200 + (TG)n Simple_repeat Simple_repeat 2 50 0 200 164 41 14 chr15 92227338 92227411 -9153110 + (TA)n Simple_repeat Simple_repeat 2 76 0 439 248 110 51 chr15 92227475 92227729 -9152792 + L1M4 LINE L1 2656 2924 -3222 234 267 75 17 chr15 92227885 92228005 -9152516 + L1M4 LINE L1 5180 5306 -840 2012 135 0 43 chr15 92228007 92228333 -9152188 + AluSx SINE Alu 1 312 0 294 289 24 0 chr15 92229277 92229360 -9151161 - MLT1L LTR MaLR -383 232 148 5314 137 23 50 chr15 92229855 92230438 -9150083 - MER4D LTR ERV1 0 903 353 2134 126 3 3 chr15 92230438 92230748 -9149773 + AluSg SINE Alu 1 310 0 5314 137 23 50 chr15 92230748 92231092 -9149429 - MER4D LTR ERV1 -550 353 1 2153 168 46 30 chr15 92232159 92232705 -9147816 - MLT2A2 LTR ERVL 0 554 1 2668 228 109 19 chr15 92233536 92234405 -9146116 - L1MCb LINE L1 -2924 3640 2684 243 0 0 0 chr15 92234405 92234432 -9146089 + (TC)n Simple_repeat Simple_repeat 2 28 0 2668 228 109 19 chr15 92234432 92234467 -9146054 - L1MCb LINE L1 -3880 2684 2654 1335 163 4 13 chr15 92234467 92234481 -9146040 - AluSg/x SINE Alu -1 309 296 2465 90 0 0 chr15 92234481 92234792 -9145729 - AluY SINE Alu 0 311 1 1335 163 4 13 chr15 92234792 92235004 -9145517 - AluSg/x SINE Alu -14 296 85 2480 236 71 41 chr15 92235004 92235159 -9145362 - L1MCb LINE L1 -4007 2557 2408 1770 194 0 3 chr15 92235159 92235447 -9145074 - AluJo SINE Alu -20 292 6 2480 236 71 41 chr15 92235447 92237133 -9143388 - L1MCb LINE L1 -4156 2408 607 23 0 0 0 chr15 92237158 92237181 -9143340 + AT_rich Low_complexity Low_complexity 1 23 0 557 280 112 49 chr15 92237187 92238110 -9142411 + L1MC4 LINE L1 5872 6949 -944 * 1577 248 47 3 chr15 92238102 92238489 -9142032 + L1MDb LINE L1 135 538 -6005 * 2002 165 22 14 chr15 92238467 92238836 -9141685 + L1MDb LINE L1 834 1205 -5338 1326 210 159 14 chr15 92238829 92239262 -9141259 + L1MDb LINE L1 2126 2621 -3919 * 311 280 56 56 chr15 92239263 92239457 -9141064 + L1MC5 LINE L1 7518 7714 -247 2305 88 0 26 chr15 92239457 92239763 -9140758 + AluSx SINE Alu 3 300 -12 311 280 56 56 chr15 92239763 92239836 -9140685 + L1MC5 LINE L1 7713 7785 -176 379 233 11 0 chr15 92239862 92239952 -9140569 + L1P3 LINE L1 13 103 -5772 420 301 19 32 chr15 92239953 92240109 -9140412 + L1P3 LINE L1 589 742 -5133 6216 91 16 8 chr15 92240111 92240988 -9139533 + L1PA10 LINE L1 5260 6143 -25 1302 119 0 0 chr15 92240988 92241165 -9139356 + AluSg/x SINE Alu 136 312 0 559 167 8 8 chr15 92241165 92241285 -9139236 + GA-rich Low_complexity Low_complexity 4 123 0 23 33 0 0 chr15 92242104 92242134 -9138387 + AT_rich Low_complexity Low_complexity 1 30 0 216 67 0 0 chr15 92242826 92242856 -9137665 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 412 352 85 45 chr15 92242869 92243340 -9137181 - L2 LINE L2 -20 3293 2804 770 283 135 51 chr15 92243438 92244081 -9136440 - L2 LINE L2 -711 2603 1907 187 298 80 32 chr15 92244130 92244318 -9136203 + L2 LINE L2 1689 1885 -1429 1418 149 63 91 chr15 92244357 92244411 -9136110 + THE1C LTR MaLR 1 55 -320 2030 123 60 0 chr15 92244411 92244695 -9135826 + AluSx SINE Alu 1 301 -11 1418 149 63 91 chr15 92244695 92244990 -9135531 + THE1C LTR MaLR 55 340 -35 4800 109 29 33 chr15 92245006 92245804 -9134717 - L1PB1 LINE L1 -3 6148 5354 306 347 52 12 chr15 92245871 92246044 -9134477 - L1M4 LINE L1 -1105 5041 4862 282 73 0 0 chr15 92246295 92246336 -9134185 + (CA)n Simple_repeat Simple_repeat 1 41 0 1943 154 0 0 chr15 92246818 92247110 -9133411 + AluSx SINE Alu 1 292 -20 1262 282 59 28 chr15 92247593 92248358 -9132163 + L2 LINE L2 2526 3313 0 187 296 112 10 chr15 92249161 92249259 -9131262 - MIR SINE MIR -72 190 83 23 33 0 0 chr15 92249671 92249701 -9130820 + AT_rich Low_complexity Low_complexity 1 30 0 326 325 16 24 chr15 92250149 92250275 -9130246 + MIR SINE MIR 66 190 -72 935 224 85 57 chr15 92250651 92251040 -9129481 + LTR37A LTR ERV1 1 400 -26 1752 95 0 95 chr15 92251040 92251324 -9129197 + AluSc SINE Alu 39 295 -14 409 281 39 35 chr15 92303039 92303271 -9077250 - L1MC4a LINE L1 -1886 5922 5686 245 292 67 34 chr15 92303936 92304114 -9076407 + L1ME LINE L1 404 587 -5618 2400 134 25 45 chr15 92304447 92304888 -9075633 - MSTB1 LTR MaLR 0 432 1 422 315 43 37 chr15 92304980 92305341 -9075180 + L1M3c LINE L1 1038 1663 -4694 2176 262 31 29 chr15 92305350 92305933 -9074588 + L1ME LINE L1 1645 2225 -3990 2041 73 0 0 chr15 92305933 92306223 -9074298 - AluY SINE Alu 0 325 36 2403 68 0 3 chr15 92306228 92306524 -9073997 - AluY SINE Alu -16 295 1 2176 262 31 29 chr15 92306524 92306931 -9073590 + L1ME LINE L1 2228 2602 -3613 293 62 21 0 chr15 92306935 92306983 -9073538 + (TC)n Simple_repeat Simple_repeat 2 50 0 354 283 7 13 chr15 92306987 92307139 -9073382 + L1MCa LINE L1 1058 1208 -5218 231 88 0 0 chr15 92307139 92307173 -9073348 + (GGAA)n Simple_repeat Simple_repeat 1 34 0 3729 248 83 24 chr15 92307198 92309823 -9070698 + L1MCa LINE L1 1366 4121 -2305 888 324 46 15 chr15 92309828 92310303 -9070218 - HERVL LTR ERVL -1526 4128 3639 568 229 41 23 chr15 92310338 92310604 -9069917 + L1ME1 LINE L1 2167 2437 -3959 601 321 45 75 chr15 92310605 92311004 -9069517 + L2 LINE L2 2919 3305 -8 735 267 38 10 chr15 92311043 92311331 -9069190 + L1ME1 LINE L1 2384 2679 -3536 2047 247 47 42 chr15 92311366 92311515 -9069006 + L1ME1 LINE L1 5488 5635 -600 1886 141 31 60 chr15 92311515 92311899 -9068622 + THE1C LTR MaLR 1 373 -2 2047 247 47 42 chr15 92311899 92312493 -9068028 + L1ME1 LINE L1 5635 6235 0 885 281 16 7 chr15 92312505 92312815 -9067706 + L1ME3A LINE L1 5750 6062 -108 1301 231 64 11 chr15 92312846 92313219 -9067302 + L1ME1 LINE L1 5482 5874 -292 665 218 82 12 chr15 92313220 92313390 -9067131 - MER20 DNA MER1_type -1 218 37 680 254 40 27 chr15 92313397 92313621 -9066900 + L1ME1 LINE L1 5862 6088 -78 208 258 65 108 chr15 92314922 92315015 -9065506 - MER91C DNA MER1_type -20 120 32 323 377 87 0 chr15 92315405 92315543 -9064978 + L1PB4 LINE L1 669 818 -6032 4914 235 54 39 chr15 92315549 92315665 -9064856 + L1PB4 LINE L1 1563 1676 -5173 2275 125 0 0 chr15 92315665 92315976 -9064545 + AluSx SINE Alu 1 311 -1 4914 235 54 39 chr15 92315976 92318385 -9062136 + L1PB4 LINE L1 1676 4147 -2702 * 5630 181 33 21 chr15 92318380 92318813 -9061708 + L1PB4 LINE L1 4664 5090 -1769 279 0 0 0 chr15 92318813 92318844 -9061677 + (CA)n Simple_repeat Simple_repeat 1 31 0 5630 181 33 21 chr15 92318844 92320126 -9060395 + L1PB4 LINE L1 5090 6391 -468 1994 69 3 105 chr15 92320126 92320458 -9060063 + AluSp SINE Alu 1 298 -5 5630 181 33 21 chr15 92320458 92320809 -9059712 + L1PB4 LINE L1 6391 6736 -123 1109 107 0 0 chr15 92320810 92320959 -9059562 + AluSg/x SINE Alu 137 285 -27 581 203 31 0 chr15 92320959 92321087 -9059434 + L1PB4 LINE L1 6727 6858 -1 2113 112 48 0 chr15 92321230 92321525 -9058996 + AluSx SINE Alu 3 311 -1 188 309 82 10 chr15 92321629 92321726 -9058795 - L3 LINE CR1 -391 1186 1083 849 242 0 11 chr15 92322186 92322376 -9058145 - MER5A DNA MER1_type 0 189 2 180 174 65 43 chr15 92322614 92322660 -9057861 - L2 LINE L2 -10 3303 3257 726 269 25 5 chr15 92324273 92324470 -9056051 + MIR SINE MIR 3 203 -59 180 269 221 10 chr15 92324540 92324644 -9055877 - MIR3 SINE MIR -1 207 82 2872 173 76 48 chr15 92324797 92325504 -9055017 - LTR8A LTR ERV1 0 727 1 185 347 82 0 chr15 92325760 92325858 -9054663 - L2 LINE L2 -1313 2001 1896 4109 122 13 8 chr15 92325896 92326527 -9053994 + MER41B LTR ERV1 2 635 0 188 257 190 39 chr15 92326527 92326697 -9053824 + L2 LINE L2 1867 2067 -1247 3148 171 84 22 chr15 92326699 92326881 -9053640 - Tigger1 DNA MER2_type -1743 675 506 2501 99 8 0 chr15 92326881 92327245 -9053276 + L1PA10 LINE L1 5793 6159 -9 3148 171 84 22 chr15 92327245 92327683 -9052838 - Tigger1 DNA MER2_type -1912 506 17 220 313 175 33 chr15 92327718 92327958 -9052563 + L2 LINE L2 2703 2976 -338 2341 142 32 41 chr15 92328008 92328444 -9052077 - Tigger2a DNA MER2_type 0 434 3 338 272 43 53 chr15 92328716 92328893 -9051628 + MER5A DNA MER1_type 19 177 -1 366 290 116 31 chr15 92329662 92329886 -9050635 - Charlie8 DNA MER1_type -2174 243 1 28 61 0 0 chr15 92330810 92330859 -9049662 + AT_rich Low_complexity Low_complexity 1 49 0 3066 20 0 0 chr15 92330889 92331245 -9049276 - L1PA3 LINE L1 0 6155 5800 320 332 142 21 chr15 92331288 92331619 -9048902 - L1 LINE L1 -2220 3926 3556 356 224 26 167 chr15 92331714 92331906 -9048615 + MER5B DNA MER1_type 8 172 -6 1559 161 62 34 chr15 92332095 92332387 -9048134 + AluJo SINE Alu 1 300 -12 387 309 92 20 chr15 92332388 92332637 -9047884 - L1 LINE L1 -2938 3208 2942 2046 114 33 7 chr15 92333199 92333498 -9047023 - AluSx SINE Alu -5 307 1 5001 177 42 6 chr15 92333504 92335376 -9045145 - L1PB4 LINE L1 -1 6155 4219 * 5845 201 14 11 chr15 92335374 92336697 -9043824 + L1PB4 LINE L1 2905 4231 -1915 21 57 0 0 chr15 92336813 92336848 -9043673 + AT_rich Low_complexity Low_complexity 1 35 0 505 249 72 50 chr15 92337030 92337211 -9043310 + MIR SINE MIR 6 190 -72 298 333 33 27 chr15 92337523 92337673 -9042848 - MIR SINE MIR -55 207 57 580 278 30 56 chr15 92339298 92339532 -9040989 - L2 LINE L2 0 3272 3045 393 281 62 7 chr15 92340334 92340480 -9040041 + MIR SINE MIR 59 212 -50 247 310 172 0 chr15 92340496 92340612 -9039909 + MER91C DNA MER1_type 5 140 0 1957 113 0 32 chr15 92340958 92341241 -9039280 - AluSq SINE Alu -39 274 1 184 360 58 12 chr15 92341984 92342070 -9038451 - MIR3 SINE MIR -30 178 89 1988 212 29 13 chr15 92342084 92342537 -9037984 + LTR40b LTR ERVL 1 460 -2 350 267 33 0 chr15 92343943 92344033 -9036488 - L1MC4 LINE L1 -1337 6705 6613 315 127 0 0 chr15 92344034 92344097 -9036424 + (TA)n Simple_repeat Simple_repeat 2 64 0 231 36 0 0 chr15 92344097 92344125 -9036396 + (CA)n Simple_repeat Simple_repeat 2 29 0 2871 86 11 6 chr15 92344642 92345004 -9035517 - THE1B LTR MaLR 0 364 1 303 122 0 0 chr15 92345044 92345093 -9035428 + (CA)n Simple_repeat Simple_repeat 2 50 0 1102 99 6 6 chr15 92345884 92346056 -9034465 + (GAAA)n Simple_repeat Simple_repeat 2 173 0 261 0 0 0 chr15 92346055 92346084 -9034437 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 * 279 214 29 14 chr15 92347248 92347318 -9033203 + MER103 DNA DNA 17 87 -79 2969 6 0 0 chr15 92347353 92347671 -9032850 - AluYb8 SINE Alu 0 318 1 313 317 29 0 chr15 92347809 92347913 -9032608 + MER96 DNA MER1_type? 69 175 0 620 170 9 27 chr15 92348119 92348231 -9032290 - MER70B LTR ERVL -15 563 454 1952 287 50 14 chr15 92349064 92349569 -9030952 - MLT1E LTR MaLR -64 529 7 453 255 18 91 chr15 92349576 92349809 -9030712 - L1M4 LINE L1 -5632 1227 862 360 258 144 41 chr15 92349992 92350220 -9030301 - L1M4 LINE L1 -6383 472 91 246 268 0 0 chr15 92350691 92350747 -9029774 + L2 LINE L2 2493 2548 -766 2541 169 19 16 chr15 92350827 92351260 -9029261 - Tigger2a DNA MER2_type 0 434 1 472 287 61 0 chr15 92351293 92351457 -9029064 + MIR SINE MIR 89 262 0 324 361 0 26 chr15 92351450 92351605 -9028916 + L2 LINE L2 2555 2705 -609 * 2242 105 0 3 chr15 92351612 92351907 -9028614 + AluSx SINE Alu 1 294 -18 812 242 35 10 chr15 92351941 92352139 -9028382 - MER63A DNA MER1_type -6 204 2 223 372 22 0 chr15 92352146 92352283 -9028238 + L2 LINE L2 2739 2878 -436 475 322 144 28 chr15 92352315 92352519 -9028002 + L2 LINE L2 2957 3213 -100 1661 192 0 7 chr15 92352519 92352816 -9027705 + AluJb SINE Alu 7 301 -11 475 322 144 28 chr15 92352816 92352931 -9027590 + L2 LINE L2 3213 3313 0 447 273 283 16 chr15 92353059 92353246 -9027275 - MIR SINE MIR -22 240 4 2021 90 50 4 chr15 92353278 92353556 -9026965 + AluSq SINE Alu 1 291 -22 250 299 237 10 chr15 92353980 92354077 -9026444 + MER5B DNA MER1_type 1 119 -59 5447 161 33 18 chr15 92355262 92356294 -9024227 + L1MA9 LINE L1 5266 6312 0 233 109 0 87 chr15 92356545 92356591 -9023930 - L1M2 LINE L1 -790 5510 5469 308 306 59 41 chr15 92356812 92356982 -9023539 + L1ME4a LINE L1 5713 5885 -236 465 319 51 28 chr15 92358895 92359149 -9021372 + MIR SINE MIR 3 262 0 202 329 0 14 chr15 92359201 92359274 -9021247 + MIR SINE MIR 58 129 -133 341 262 112 0 chr15 92359797 92359904 -9020617 + LTR16A LTR ERVL 326 444 -6 2307 105 7 0 chr15 92361222 92361527 -9018994 + AluSx SINE Alu 1 307 -5 2291 79 0 16 chr15 92362076 92362379 -9018142 + AluY SINE Alu 1 298 -13 375 286 57 34 chr15 92363295 92363470 -9017051 + MIR SINE MIR 71 249 -13 608 169 97 0 chr15 92364522 92364646 -9015875 + MER63A DNA MER1_type 73 208 -2 357 324 45 0 chr15 92364813 92364924 -9015597 - MER91C DNA MER1_type -24 116 1 312 27 0 0 chr15 92364961 92364998 -9015523 + (CA)n Simple_repeat Simple_repeat 1 37 0 328 311 16 58 chr15 92366533 92366655 -9013866 + MIR SINE MIR 15 149 -67 649 240 8 0 chr15 92366765 92366894 -9013627 + MER5A DNA MER1_type 1 130 -59 384 281 73 17 chr15 92367638 92367816 -9012705 - MIR SINE MIR -12 250 63 658 63 0 0 chr15 92368099 92368178 -9012343 + MADE1 DNA Mariner 1 79 -1 3750 146 34 15 chr15 92368915 92369505 -9011016 + MER6A DNA MER2_type 1 601 -4 2961 136 21 2 chr15 92370488 92370908 -9009613 - MSTA LTR MaLR 0 428 1 340 336 0 0 chr15 92371495 92371629 -9008892 + (TG)n Simple_repeat Simple_repeat 1 134 0 409 329 6 0 chr15 92373055 92373225 -9007296 + (TG)n Simple_repeat Simple_repeat 1 171 0 220 293 0 0 chr15 92374292 92374350 -9006171 - L2 LINE L2 0 3272 3215 291 299 31 94 chr15 92374825 92375079 -9005442 + MIR SINE MIR 22 259 -3 25 31 0 0 chr15 92375994 92376026 -9004495 + AT_rich Low_complexity Low_complexity 1 32 0 306 294 16 87 chr15 92376241 92376367 -9004154 - MER5A DNA MER1_type -61 128 12 1464 111 0 58 chr15 92376596 92376822 -9003699 - AluSg/x SINE Alu -9 303 91 313 362 92 16 chr15 92377120 92377305 -9003216 + MIR SINE MIR 18 216 -46 456 266 158 25 chr15 92377310 92377513 -9003008 + MIR SINE MIR 32 261 -1 1947 193 38 53 chr15 92380245 92380697 -8999824 - MLT1D LTR MaLR -2 503 59 1791 186 16 91 chr15 92380704 92381188 -8999333 - MER101 LTR ERV1 -16 458 11 547 231 39 45 chr15 92381187 92381343 -8999178 - MLT1D LTR MaLR -344 161 7 * 28 0 0 0 chr15 92381709 92381737 -8998784 + GC_rich Low_complexity Low_complexity 1 28 0 366 240 91 52 chr15 92381753 92381907 -8998614 - MER69 DNA AcHobo -1048 178 19 571 287 96 62 chr15 92382247 92382690 -8997831 + MLT1J LTR MaLR 3 425 -25 266 263 128 117 chr15 92383420 92383778 -8996743 + L2 LINE L2 2030 2391 -923 526 270 167 71 chr15 92383778 92384185 -8996336 - MLT1J1 LTR MaLR 0 446 1 285 382 92 21 chr15 92384741 92384979 -8995542 + L2 LINE L2 2723 2977 -337 201 244 0 6 chr15 92385053 92385138 -8995383 + L2 LINE L2 3019 3146 -167 375 152 20 20 chr15 92385156 92385255 -8995266 + CT-rich Low_complexity Low_complexity 1 99 0 264 375 13 20 chr15 92385255 92385407 -8995114 + L2 LINE L2 3163 3313 0 247 304 0 0 chr15 92385875 92385931 -8994590 + MER58A DNA MER1_type 1 56 -168 2022 96 37 0 chr15 92385958 92386229 -8994292 - AluSc SINE Alu -18 291 11 753 238 36 0 chr15 92386235 92386403 -8994118 + MER58B DNA MER1_type 168 341 0 637 319 119 15 chr15 92386708 92387043 -8993478 + MLT1J LTR MaLR 18 387 -124 2362 150 78 10 chr15 92387078 92387478 -8993043 - MSTA LTR MaLR 0 428 2 231 341 22 15 chr15 92388286 92388421 -8992100 - MIR SINE MIR -94 168 33 2478 156 56 2 chr15 92388543 92388953 -8991568 - MSTB1 LTR MaLR 0 432 1 495 292 111 29 chr15 92388996 92389239 -8991282 + MLT1G1 LTR MaLR 208 470 -125 279 93 0 0 chr15 92389238 92389281 -8991240 + MADE1 DNA Mariner 38 80 0 * 1226 178 13 30 chr15 92390615 92390851 -8989670 + AluJo SINE Alu 70 301 -11 220 328 0 0 chr15 92391083 92391147 -8989374 - L2 LINE L2 -8 3305 3242 217 384 56 40 chr15 92392325 92392450 -8988071 + L2 LINE L2 3142 3268 -4 202 250 13 26 chr15 92392872 92392948 -8987573 + A-rich Low_complexity Low_complexity 2 76 0 576 231 18 59 chr15 92393494 92393715 -8986806 - L1MC5 LINE L1 -31 7930 7719 1928 148 8 41 chr15 92393933 92394204 -8986317 - MSTB1 LTR MaLR 0 432 175 2222 119 36 28 chr15 92394204 92394565 -8985956 - THE1B LTR MaLR 0 364 1 1928 148 8 41 chr15 92394565 92394657 -8985864 - MSTB1 LTR MaLR -257 175 81 1308 158 8 8 chr15 92394663 92394903 -8985618 - MSTB1-int LTR MaLR 0 1651 1412 * 1931 191 61 11 chr15 92394896 92395336 -8985185 - MSTB1-int LTR MaLR -1189 462 1 2731 145 7 11 chr15 92395336 92395770 -8984751 - MSTB1 LTR MaLR 0 432 1 237 257 14 27 chr15 92395862 92395936 -8984585 - L2 LINE L2 0 3313 3241 807 148 25 9 chr15 92397166 92397616 -8982905 + (TG)n Simple_repeat Simple_repeat 1 457 0 520 239 44 50 chr15 92398434 92398669 -8981852 + MIR SINE MIR 27 261 -1 2391 103 3 0 chr15 92398956 92399267 -8981254 - AluSp SINE Alu -1 312 1 291 28 0 0 chr15 92400632 92400668 -8979853 + (TG)n Simple_repeat Simple_repeat 1 36 0 402 71 0 0 chr15 92400668 92400719 -8979802 + (GA)n Simple_repeat Simple_repeat 2 52 0 3557 131 47 11 chr15 92401696 92402330 -8978191 - MER51D LTR ERV1 0 657 1 216 335 140 36 chr15 92402587 92402808 -8977713 - L2 LINE L2 -43 3270 3027 340 264 259 15 chr15 92403178 92403379 -8977142 - MIR SINE MIR -9 253 4 440 293 93 33 chr15 92404148 92404363 -8976158 - MIR SINE MIR -1 261 34 397 121 0 0 chr15 92404457 92404515 -8976006 - MER58A DNA MER1_type -13 94 37 559 232 34 11 chr15 92404560 92404737 -8975784 + MER63 DNA MER1_type 851 1031 -29 202 287 234 30 chr15 92404749 92404916 -8975605 + MIR SINE MIR 43 243 -19 217 402 93 0 chr15 92405446 92405553 -8974968 - L2 LINE L2 -37 3235 3119 261 323 56 111 chr15 92405724 92406102 -8974419 + L2 LINE L2 2916 3272 0 1996 122 0 18 chr15 92406211 92406527 -8973994 + AluSx SINE Alu 1 311 0 1101 219 144 26 chr15 92407236 92407621 -8972900 - MLT1G LTR MaLR -64 503 49 560 65 13 0 chr15 92408163 92408240 -8972281 + MADE1 DNA Mariner 3 80 0 1955 122 0 78 chr15 92408621 92408940 -8971581 - AluSg SINE Alu -16 294 1 714 57 0 0 chr15 92408961 92409049 -8971472 - AluSg/x SINE Alu -21 291 204 4460 135 8 45 chr15 92409049 92409434 -8971087 - L1PB3 LINE L1 -15 6139 5742 2231 86 45 0 chr15 92409434 92409726 -8970795 - AluY SINE Alu -2 309 5 4460 135 8 45 chr15 92409726 92410193 -8970328 - L1PB3 LINE L1 -412 5742 5318 363 314 42 0 chr15 92410632 92410750 -8969771 - MIR SINE MIR -64 198 76 319 322 79 65 chr15 92411321 92411535 -8968986 + MIR SINE MIR 39 255 -7 382 326 27 43 chr15 92412706 92412890 -8967631 - MIR SINE MIR -74 188 8 383 38 19 0 chr15 92413182 92413235 -8967286 + (CA)n Simple_repeat Simple_repeat 1 54 0 21 36 0 0 chr15 92413572 92413600 -8966921 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr15 92413927 92413948 -8966573 + AT_rich Low_complexity Low_complexity 1 21 0 439 335 12 6 chr15 92414253 92414417 -8966104 + MIR SINE MIR 81 245 -17 28 48 0 0 chr15 92414623 92414665 -8965856 + AT_rich Low_complexity Low_complexity 1 42 0 482 0 17 0 chr15 92417123 92417181 -8963340 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 336 281 16 8 chr15 92417576 92417704 -8962817 + L1ME LINE L1 5525 5653 -468 21 0 0 0 chr15 92417741 92417762 -8962759 + AT_rich Low_complexity Low_complexity 1 21 0 272 293 8 8 chr15 92417918 92418041 -8962480 + (TA)n Simple_repeat Simple_repeat 1 123 0 284 306 8 16 chr15 92419395 92419516 -8961005 - MLT1K LTR MaLR -1 587 468 22 0 0 0 chr15 92419517 92419539 -8960982 + AT_rich Low_complexity Low_complexity 1 22 0 322 191 0 0 chr15 92419724 92419787 -8960734 - MLT1L LTR MaLR -415 200 138 346 168 0 20 chr15 92419901 92420002 -8960519 + (TA)n Simple_repeat Simple_repeat 1 99 0 182 43 43 43 chr15 92420040 92420086 -8960435 + (TA)n Simple_repeat Simple_repeat 1 46 0 205 183 49 37 chr15 92420087 92420169 -8960352 + (CTATA)n Simple_repeat Simple_repeat 4 86 0 * 266 164 63 38 chr15 92420126 92420285 -8960236 + (TA)n Simple_repeat Simple_repeat 1 163 0 281 108 0 31 chr15 92420287 92420352 -8960169 + (TATAA)n Simple_repeat Simple_repeat 2 64 0 260 207 74 0 chr15 92420356 92420477 -8960044 + (TTATA)n Simple_repeat Simple_repeat 2 131 0 393 144 44 50 chr15 92420584 92420764 -8959757 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 417 214 22 22 chr15 92420660 92420838 -8959683 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 325 122 67 18 chr15 92420850 92421014 -8959507 + (TA)n Simple_repeat Simple_repeat 1 172 0 339 224 29 23 chr15 92421037 92421276 -8959245 + (TATAA)n Simple_repeat Simple_repeat 1 240 0 285 273 154 45 chr15 92421298 92421408 -8959113 + L2 LINE L2 3189 3310 -3 2198 136 0 0 chr15 92422030 92422332 -8958189 - AluSx SINE Alu -10 302 1 2166 120 7 19 chr15 92422877 92423186 -8957335 - AluSq SINE Alu -8 305 1 300 170 0 0 chr15 92423385 92423432 -8957089 + MER63C DNA MER1_type 1 47 -883 1423 113 3 128 chr15 92423455 92423783 -8956738 + LTR12 LTR ERV1 1 287 -427 306 164 15 0 chr15 92423783 92423850 -8956671 + LTR30 LTR ERV1 557 624 -98 681 136 34 0 chr15 92423850 92423968 -8956553 + LTR12 LTR ERV1 359 480 -234 3045 211 60 10 chr15 92423973 92424788 -8955733 + MER63C DNA MER1_type 75 930 0 1831 90 63 37 chr15 92424903 92425202 -8955319 - AluSx SINE Alu -5 307 1 234 0 0 0 chr15 92426491 92426517 -8954004 + (TG)n Simple_repeat Simple_repeat 1 26 0 340 311 58 61 chr15 92428616 92429188 -8951333 - L1ME4a LINE L1 -205 5916 5347 238 203 0 72 chr15 92430201 92430270 -8950251 - L1ME4a LINE L1 -2001 4145 4082 2087 123 7 0 chr15 92430426 92430718 -8949803 - AluSx SINE Alu -5 307 14 33 0 0 0 chr15 92430862 92430895 -8949626 + AT_rich Low_complexity Low_complexity 1 33 0 2141 52 85 0 chr15 92431397 92431667 -8948854 - AluY SINE Alu -18 293 1 23 33 0 0 chr15 92431677 92431707 -8948814 + AT_rich Low_complexity Low_complexity 1 30 0 363 405 53 20 chr15 92432014 92432355 -8948166 + HAL1 LINE L1 171 522 -1985 203 184 0 0 chr15 92432399 92432437 -8948084 + A-rich Low_complexity Low_complexity 1 38 0 2212 106 0 0 chr15 92432606 92432913 -8947608 + AluSx SINE Alu 1 307 0 633 231 105 84 chr15 92432916 92433300 -8947221 - MER57A LTR ERV1 -21 407 12 871 219 72 44 chr15 92433420 92433740 -8946781 + HAL1 LINE L1 1259 1587 -920 4768 105 23 8 chr15 92433771 92434515 -8946006 + L1PA14 LINE L1 5398 6152 -9 320 291 56 11 chr15 92434523 92434702 -8945819 + HAL1 LINE L1 1607 1793 -714 2091 117 0 0 chr15 92434711 92434992 -8945529 + AluSc SINE Alu 1 281 -28 24 0 0 0 chr15 92434992 92435016 -8945505 + AT_rich Low_complexity Low_complexity 1 24 0 386 293 115 28 chr15 92435142 92435417 -8945104 + MLT1H1 LTR MaLR 40 298 -292 288 234 169 2 chr15 92435447 92435553 -8944968 + MLT1H1 LTR MaLR 429 538 -17 441 287 38 38 chr15 92435553 92435736 -8944785 + HAL1 LINE L1 1862 2047 -460 2348 90 3 0 chr15 92435736 92436046 -8944475 + AluSp SINE Alu 1 311 -2 441 287 38 38 chr15 92436046 92436151 -8944370 + HAL1 LINE L1 2046 2150 -357 2196 94 0 39 chr15 92436467 92436774 -8943747 - AluSq SINE Alu -18 295 1 2166 43 14 21 chr15 92437106 92437418 -8943103 + AluY SINE Alu 1 310 0 848 201 18 6 chr15 92437460 92437629 -8942892 - FAM SINE Alu -4 171 1 2301 93 3 3 chr15 92438122 92438424 -8942097 - AluSq SINE Alu -11 302 1 198 179 94 151 chr15 92440336 92440442 -8940079 + L2 LINE L2 3197 3296 -17 228 67 0 0 chr15 92440448 92440478 -8940043 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 342 255 49 134 chr15 92442091 92442222 -8938299 - MIR SINE MIR -7 255 153 2670 144 29 29 chr15 92442222 92442449 -8938072 - L1MB3 LINE L1 -2 6181 5955 2299 103 7 0 chr15 92442449 92442750 -8937771 - AluSg SINE Alu -7 303 1 2670 144 29 29 chr15 92442750 92443035 -8937486 - L1MB3 LINE L1 -227 5956 5669 342 255 49 134 chr15 92443035 92443150 -8937371 - MIR SINE MIR -109 153 30 1311 164 79 57 chr15 92444990 92445307 -8935214 - MER33 DNA MER1_type 0 324 1 272 286 66 66 chr15 92445622 92445818 -8934703 + MIR SINE MIR 2 197 -65 183 280 0 0 chr15 92446351 92446401 -8934120 + L2 LINE L2 3221 3270 -2 2239 117 3 0 chr15 92446694 92446994 -8933527 + AluSx SINE Alu 1 301 -11 448 306 50 62 chr15 92448159 92448401 -8932120 - MIR SINE MIR -5 257 19 438 281 40 79 chr15 92449389 92449692 -8930829 + LTR16C LTR ERVL 199 489 -2 610 231 113 19 chr15 92449937 92450004 -8930517 - FAM SINE Alu -136 175 116 1697 177 7 0 chr15 92450004 92450298 -8930223 - AluJb SINE Alu -16 296 1 610 231 113 19 chr15 92450298 92450390 -8930131 - FAM SINE Alu -195 116 1 267 336 18 18 chr15 92450733 92450846 -8929675 - MER5A DNA MER1_type -70 119 7 510 303 82 0 chr15 92450968 92451176 -8929345 - LTR33A LTR ERVL -2 521 297 426 264 161 7 chr15 92452080 92452232 -8928289 - LTR33A LTR ERVL -309 214 55 2298 98 0 13 chr15 92452411 92452717 -8927804 + AluSx SINE Alu 1 302 -10 37 23 0 0 chr15 92452857 92452901 -8927620 + AT_rich Low_complexity Low_complexity 1 44 0 238 231 177 8 chr15 92453046 92453176 -8927345 + MER103 DNA DNA 9 160 -6 565 279 25 6 chr15 92453176 92453337 -8927184 - L2 LINE L2 -2 3311 3148 195 402 0 11 chr15 92453507 92453594 -8926927 + MIR SINE MIR 11 96 -166 407 325 47 0 chr15 92453680 92453849 -8926672 + MIR SINE MIR 86 262 0 218 223 46 85 chr15 92453868 92453998 -8926523 + L2 LINE L2 2734 2858 -456 9242 182 26 31 chr15 92455402 92455791 -8924730 + L1PA15 LINE L1 3319 3709 -2456 2832 93 3 3 chr15 92455791 92456146 -8924375 - THE1A LTR MaLR 0 355 1 9242 182 26 31 chr15 92456146 92457740 -8922781 + L1PA15 LINE L1 3709 5280 -885 1471 104 191 12 chr15 92457740 92457991 -8922530 + AluSg1 SINE Alu 14 309 0 9242 182 26 31 chr15 92457991 92458873 -8921648 + L1PA15 LINE L1 5280 6165 0 479 297 96 50 chr15 92458983 92459286 -8921235 + HAL1 LINE L1 1051 1367 -1140 1049 316 162 32 chr15 92459303 92459611 -8920910 - L2 LINE L2 -214 3099 2832 4180 157 65 1 chr15 92459611 92460286 -8920235 + MER72 LTR ERV1 5 722 0 1049 316 162 32 chr15 92460286 92461256 -8919265 - L2 LINE L2 -481 2832 1647 243 345 71 9 chr15 92461781 92461894 -8918627 + L2 LINE L2 3152 3271 -1 183 42 0 0 chr15 92462080 92462104 -8918417 + (ATG)n Simple_repeat Simple_repeat 2 25 0 234 308 71 76 chr15 92462247 92462262 -8918259 - MIR SINE MIR 0 262 248 9472 108 8 3 chr15 92462262 92463555 -8916966 - HSMAR2 DNA Mariner -2 1300 2 234 308 71 76 chr15 92463555 92463763 -8916758 - MIR SINE MIR -14 248 40 1454 175 20 8 chr15 92463768 92464048 -8916473 - AluSx SINE Alu 0 310 28 570 206 0 0 chr15 92465069 92465190 -8915331 - FRAM SINE Alu 0 170 50 257 196 159 75 chr15 92465812 92465919 -8914602 - L2 LINE L2 0 3272 3157 985 297 76 80 chr15 92467454 92468358 -8912163 + HAL1 LINE L1 271 1171 -1336 2347 92 0 0 chr15 92468358 92468651 -8911870 + AluSg1 SINE Alu 1 293 -16 985 297 76 80 chr15 92468651 92468870 -8911651 + HAL1 LINE L1 1171 1389 -1118 834 129 23 6 chr15 92468887 92469201 -8911320 + (CA)n Simple_repeat Simple_repeat 1 319 0 258 162 40 0 chr15 92469212 92469286 -8911235 + (CA)n Simple_repeat Simple_repeat 2 78 0 814 131 25 8 chr15 92469298 92469834 -8910687 + (CA)n Simple_repeat Simple_repeat 1 545 0 606 148 24 12 chr15 92469875 92470044 -8910477 + (CA)n Simple_repeat Simple_repeat 2 172 0 29711 36 1 5 chr15 92520759 92525337 -8855184 - L1PA4 LINE L1 -59 6096 1539 2444 86 16 70 chr15 92526353 92526738 -8853783 - THE1B LTR MaLR 0 364 1 25 51 0 0 chr15 92528121 92528160 -8852361 + AT_rich Low_complexity Low_complexity 1 39 0 5045 98 30 45 chr15 92529976 92530768 -8849753 + LTR17 LTR ERV1 1 780 0 248 276 58 0 chr15 92530771 92530858 -8849663 + MER119 DNA MER1_type 479 570 -13 353 280 40 20 chr15 92530902 92531052 -8849469 - L1M4 LINE L1 -2579 3567 3415 2124 107 0 4 chr15 92531275 92531596 -8848925 - AluSg SINE Alu 0 320 1 1716 186 10 3 chr15 92531667 92531957 -8848564 - AluJo SINE Alu -10 302 11 330 248 179 18 chr15 92532047 92532265 -8848256 - L1M4 LINE L1 -3104 3042 2790 306 336 51 48 chr15 92532277 92532649 -8847872 - L1M4 LINE L1 -743 5403 5031 2202 274 49 29 chr15 92532722 92533628 -8846893 - MER69B DNA AcHobo -64 1162 239 414 266 0 0 chr15 92533698 92533792 -8846729 - MER81 DNA DNA -20 94 1 365 290 89 0 chr15 92533795 92533919 -8846602 - MER69B DNA AcHobo -1047 179 45 246 32 0 0 chr15 92534582 92534613 -8845908 + (TG)n Simple_repeat Simple_repeat 2 32 0 353 289 0 0 chr15 92534797 92534887 -8845634 + L1MC4 LINE L1 6614 6703 -1339 236 250 23 0 chr15 92534893 92534981 -8845540 + L1MC4 LINE L1 6614 6703 -1339 * 238 255 0 21 chr15 92534939 92535033 -8845488 - L1MC4 LINE L1 -1339 6703 6612 185 333 53 0 chr15 92535076 92535151 -8845370 + MIR SINE MIR 125 203 -59 418 272 136 33 chr15 92536412 92536596 -8843925 - MIR SINE MIR -3 259 57 355 178 163 39 chr15 92536705 92536834 -8843687 - MER104 DNA Tc2 -11 169 25 333 370 97 23 chr15 92537635 92538027 -8842494 + L2 LINE L2 2844 3264 -8 677 281 35 0 chr15 92538081 92538252 -8842269 + MER5B DNA MER1_type 2 178 0 351 241 66 174 chr15 92538258 92538470 -8842051 + MER5A DNA MER1_type 1 189 0 615 166 7 43 chr15 92538505 92538644 -8841877 - LTR12 LTR ERV1 -100 614 481 233 278 11 0 chr15 92538646 92538736 -8841785 - LTR30 LTR ERV1 -80 642 552 1699 147 3 7 chr15 92538736 92539022 -8841499 - LTR12 LTR ERV1 -429 285 1 1973 95 3 25 chr15 92539024 92539308 -8841213 + AluSx SINE Alu 33 310 -2 399 274 121 25 chr15 92539612 92539828 -8840693 - MIR SINE MIR -3 259 30 2463 75 44 33 chr15 92539957 92540317 -8840204 + THE1B LTR MaLR 1 364 0 236 288 0 15 chr15 92540564 92540630 -8839891 - L2 LINE L2 -40 3232 3168 345 100 0 0 chr15 92540791 92540841 -8839680 + (TG)n Simple_repeat Simple_repeat 2 51 0 2003 140 17 0 chr15 92542455 92542748 -8837773 - AluSx SINE Alu -14 298 1 479 219 32 0 chr15 92543074 92543229 -8837292 + L1MB2 LINE L1 4249 4408 -1738 1610 199 30 3 chr15 92543242 92543604 -8836917 - L1 LINE L1 -3124 3022 2651 281 143 0 0 chr15 92543594 92543643 -8836878 + L1MA7 LINE L1 6060 6108 -183 * 336 70 35 0 chr15 92543679 92543736 -8836785 + AluSc SINE Alu 236 294 -5 265 93 0 0 chr15 92543732 92543775 -8836746 - MADE1 DNA Mariner -37 43 1 * 564 205 92 0 chr15 92543778 92543963 -8836558 + L1MA9 LINE L1 6109 6310 -2 621 168 95 0 chr15 92544060 92544197 -8836324 - L1MA4 LINE L1 0 6300 6151 3856 203 37 18 chr15 92544216 92545911 -8834610 + L1MB2 LINE L1 4432 6145 -26 1847 68 140 0 chr15 92546088 92546352 -8834169 + AluY SINE Alu 1 301 0 2187 107 3 10 chr15 92547601 92547909 -8832612 - AluSx SINE Alu -6 306 1 1036 206 10 51 chr15 92548409 92548691 -8831830 + MLT1B LTR MaLR 7 249 -116 2518 59 0 3 chr15 92548767 92549070 -8831451 + AluY SINE Alu 1 302 -9 669 246 79 0 chr15 92550223 92550426 -8830095 + MSTD LTR MaLR 3 221 -175 1539 153 54 75 chr15 92550431 92550803 -8829718 + THE1C LTR MaLR 1 364 -11 616 222 78 7 chr15 92550846 92550999 -8829522 + MSTD LTR MaLR 233 396 0 1158 261 72 17 chr15 92551301 92551715 -8828806 - MLT1C LTR MaLR 0 467 31 4580 190 19 27 chr15 92551717 92551749 -8828772 + L1MA9 LINE L1 4888 4919 -1393 2255 94 0 7 chr15 92551749 92552037 -8828484 + AluSg SINE Alu 1 286 -24 203 0 0 36 chr15 92552040 92552068 -8828453 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4580 190 19 27 chr15 92552068 92553442 -8827079 + L1MA9 LINE L1 4921 6282 -30 2330 215 97 3 chr15 92553448 92554586 -8825935 + L1MDa LINE L1 83 1313 -5227 1962 85 0 11 chr15 92554591 92554851 -8825670 - AluY SINE Alu -19 292 36 258 185 0 0 chr15 92555626 92555680 -8824841 - L1MC4 LINE L1 -1337 6705 6652 270 329 0 0 chr15 92555686 92555844 -8824677 + (TA)n Simple_repeat Simple_repeat 2 159 0 221 222 0 37 chr15 92555850 92555904 -8824617 + (TATG)n Simple_repeat Simple_repeat 2 53 0 430 179 11 74 chr15 92555907 92556097 -8824424 + (TACG)n Simple_repeat Simple_repeat 1 178 0 * 594 259 0 18 chr15 92556060 92556393 -8824128 + (TATATG)n Simple_repeat Simple_repeat 1 327 0 312 294 0 22 chr15 92556410 92556502 -8824019 + L1MC4 LINE L1 6614 6703 -1339 309 322 0 0 chr15 92556426 92556516 -8824005 - L1MC4 LINE L1 -1339 6703 6614 * 243 256 0 22 chr15 92556548 92556638 -8823883 + L1MC4 LINE L1 6614 6701 -1341 552 258 0 0 chr15 92556641 92556808 -8823713 + (TA)n Simple_repeat Simple_repeat 1 167 0 522 274 0 0 chr15 92556827 92557006 -8823515 + (TA)n Simple_repeat Simple_repeat 2 180 0 324 238 71 0 chr15 92557019 92557103 -8823418 - L1MC4 LINE L1 -1339 6703 6614 307 235 0 82 chr15 92557089 92557187 -8823334 + L1MC4 LINE L1 6614 6703 -1339 * 306 290 0 21 chr15 92557117 92557210 -8823311 - L1MC4 LINE L1 -1339 6703 6613 * 486 195 0 71 chr15 92557211 92557794 -8822727 + (CATATA)n Simple_repeat Simple_repeat 1 541 0 513 261 0 0 chr15 92557816 92557996 -8822525 + (TA)n Simple_repeat Simple_repeat 1 180 0 335 250 0 42 chr15 92557997 92558093 -8822428 + L1MC4 LINE L1 6614 6705 -1337 336 233 22 22 chr15 92558099 92558189 -8822332 - L1MC4 LINE L1 -1339 6703 6614 329 275 0 22 chr15 92558172 92558263 -8822258 + L1MC4 LINE L1 6615 6703 -1339 * 332 272 0 22 chr15 92558220 92558362 -8822159 - L1MC4 LINE L1 -1339 6703 6614 320 226 0 43 chr15 92558364 92558457 -8822064 + L1MC4 LINE L1 6615 6703 -1339 * 321 236 22 22 chr15 92558377 92558466 -8822055 - L1MC4 LINE L1 -1339 6703 6615 225 178 0 0 chr15 92558467 92558512 -8822009 + (TA)n Simple_repeat Simple_repeat 1 45 0 668 228 46 41 chr15 92559001 92559220 -8821301 + MIR SINE MIR 14 233 -29 22 0 0 0 chr15 92559847 92559869 -8820652 + AT_rich Low_complexity Low_complexity 1 22 0 312 286 77 22 chr15 92562159 92562258 -8818263 - MER117 DNA MER1_type -2 195 103 2542 57 0 0 chr15 92562258 92562554 -8817967 - AluY SINE Alu -15 296 1 312 286 77 22 chr15 92562554 92562636 -8817885 - MER117 DNA MER1_type -94 103 4 294 276 10 0 chr15 92562883 92562981 -8817540 - L1ME4a LINE L1 -219 5902 5804 3443 187 46 8 chr15 92564088 92564128 -8816393 - L1MB3 LINE L1 0 6183 6146 2435 74 0 0 chr15 92564128 92564427 -8816094 - AluSp SINE Alu -14 299 1 3443 187 46 8 chr15 92564427 92565150 -8815371 - L1MB3 LINE L1 -37 6146 5391 220 323 0 16 chr15 92565218 92565280 -8815241 + MIR SINE MIR 33 93 -115 317 308 140 23 chr15 92567094 92567315 -8813206 + MIR SINE MIR 2 248 -14 217 94 0 0 chr15 92568234 92568266 -8812255 + L2 LINE L2 3119 3150 -163 21 0 0 0 chr15 92568268 92568289 -8812232 + AT_rich Low_complexity Low_complexity 1 21 0 2248 130 17 0 chr15 92568813 92569167 -8811354 + MER46B DNA MER2_type 2 236 0 474 288 131 55 chr15 92569621 92570003 -8810518 + L2 LINE L2 2624 3037 -276 2360 103 0 6 chr15 92570330 92570642 -8809879 - AluSg SINE Alu 0 310 1 1607 161 38 31 chr15 92570644 92570935 -8809586 - AluSx SINE Alu -19 293 1 470 171 29 71 chr15 92571615 92571785 -8808736 - Charlie7 DNA MER1_type -1 2611 2449 263 235 20 41 chr15 92571791 92571889 -8808632 - Charlie7 DNA MER1_type -2512 100 5 3684 111 19 54 chr15 92573481 92574113 -8806408 + MER4B LTR ERV1 1 610 0 27 0 0 0 chr15 92574870 92574897 -8805624 + AT_rich Low_complexity Low_complexity 1 27 0 1915 148 0 44 chr15 92575413 92575731 -8804790 - AluSx SINE Alu -8 304 1 2751 218 45 2 chr15 92576028 92576633 -8803888 + MER82 DNA MER2_type 1 631 -22 464 283 97 40 chr15 92576942 92577087 -8803434 + MIR SINE MIR 6 170 -92 2479 53 0 10 chr15 92577087 92577387 -8803134 + AluY SINE Alu 1 297 -14 464 283 97 40 chr15 92577387 92577467 -8803054 + MIR SINE MIR 170 244 -18 282 238 24 32 chr15 92578379 92578505 -8802016 + L1MB8 LINE L1 6053 6177 -1 216 283 0 0 chr15 92578814 92578860 -8801661 + (CA)n Simple_repeat Simple_repeat 2 47 0 539 292 7 7 chr15 92579101 92579255 -8801266 + L2 LINE L2 3159 3312 -1 245 241 181 15 chr15 92579255 92579388 -8801133 - Charlie7 DNA MER1_type -2457 155 1 1841 237 48 57 chr15 92579841 92580530 -8799991 - L1ME1 LINE L1 -16 6150 5468 2434 93 0 3 chr15 92580626 92580938 -8799583 - AluY SINE Alu 0 311 1 2272 95 3 29 chr15 92580946 92581262 -8799259 - AluSq SINE Alu -5 308 1 249 329 63 14 chr15 92582814 92583021 -8797500 + MER20 DNA MER1_type 3 219 0 280 310 52 9 chr15 92583067 92583183 -8797338 + MIR SINE MIR 121 241 -21 591 273 58 61 chr15 92583213 92583720 -8796801 + L2 LINE L2 2741 3263 -50 824 352 72 38 chr15 92585241 92585826 -8794695 + L2 LINE L2 1787 2391 -923 399 260 73 25 chr15 92586043 92586247 -8794274 + L1M4 LINE L1 2715 2928 -3218 628 231 30 34 chr15 92586960 92587228 -8793293 + L1M4 LINE L1 2910 3176 -2970 823 294 117 24 chr15 92587266 92587984 -8792537 + L1M4 LINE L1 3264 4048 -2098 2247 87 13 3 chr15 92588620 92588919 -8791602 - AluY SINE Alu -9 302 1 363 282 155 43 chr15 92589335 92589448 -8791073 + L1ME LINE L1 3692 3791 -2355 2787 3 0 0 chr15 92589448 92589749 -8790772 + AluYa5 SINE Alu 1 301 -10 363 282 155 43 chr15 92589749 92590313 -8790208 + L1ME LINE L1 3791 4445 -1701 3253 177 15 32 chr15 92590374 92591092 -8789429 + L1MC2 LINE L1 5612 6317 -27 259 278 70 48 chr15 92591124 92591394 -8789127 + L1ME LINE L1 4518 4793 -1353 355 301 82 29 chr15 92591430 92591636 -8788885 + L1ME LINE L1 4860 5076 -1070 180 0 0 0 chr15 92591636 92591656 -8788865 + (ATTTG)n Simple_repeat Simple_repeat 2 21 0 1554 178 38 22 chr15 92591659 92591979 -8788542 - L1PA15 LINE L1 -7 6809 6485 10421 235 35 16 chr15 92591979 92596078 -8784443 - L1PA15 LINE L1 -1248 5549 1330 2402 305 5 45 chr15 92596055 92596872 -8783649 - L1PA15 LINE L1 -6003 784 1 * 437 272 44 39 chr15 92597024 92597229 -8783292 + L1ME LINE L1 5434 5645 -479 2339 209 71 4 chr15 92598073 92598591 -8781930 - MER68 LTR ERV1 -9 553 1 3298 220 105 65 chr15 92601535 92602827 -8777694 + L1MD2 LINE L1 774 2013 -4393 1058 283 148 29 chr15 92602827 92603386 -8777135 + MLT1E2 LTR MaLR 1 626 0 3298 220 105 65 chr15 92603386 92604404 -8776117 + L1MD2 LINE L1 2013 2989 -3417 2254 107 7 0 chr15 92604404 92604704 -8775817 + AluSq SINE Alu 1 302 -11 3298 220 105 65 chr15 92604704 92604887 -8775634 + L1MD2 LINE L1 2989 3163 -3243 846 242 62 0 chr15 92604887 92605098 -8775423 - MER58A DNA MER1_type 0 224 1 3298 220 105 65 chr15 92605098 92605282 -8775239 + L1MD2 LINE L1 3163 3503 -2903 3136 242 98 13 chr15 92605270 92606572 -8773949 + L1MD2 LINE L1 4275 5691 -743 * 2391 216 78 17 chr15 92606754 92607398 -8773123 + L1MD2 LINE L1 5710 6392 -227 190 358 156 0 chr15 92607864 92607973 -8772548 - MER5A DNA MER1_type -4 185 60 1984 132 10 3 chr15 92608020 92608316 -8772205 - AluSx SINE Alu -1 311 14 1192 123 0 6 chr15 92608832 92609002 -8771519 + FRAM SINE Alu 1 161 -15 417 267 23 74 chr15 92609476 92609652 -8770869 - MIR SINE MIR -8 254 88 276 295 74 40 chr15 92609752 92609901 -8770620 - MIR SINE MIR -93 169 16 733 233 6 0 chr15 92610710 92610873 -8769648 + MER58B DNA MER1_type 178 341 0 186 156 0 0 chr15 92611224 92611269 -8769252 + T-rich Low_complexity Low_complexity 1 45 0 243 125 0 0 chr15 92611836 92611876 -8768645 + (TC)n Simple_repeat Simple_repeat 2 41 0 1757 148 8 0 chr15 92612224 92612487 -8768034 + AluSx SINE Alu 37 301 -11 223 45 15 91 chr15 92612497 92612563 -8767958 + (CAAAAA)n Simple_repeat Simple_repeat 2 62 0 1952 153 86 7 chr15 92612607 92613039 -8767482 + L1MD1 LINE L1 1880 2345 -4195 223 235 20 0 chr15 92613049 92613100 -8767421 + (TA)n Simple_repeat Simple_repeat 2 53 0 383 130 29 0 chr15 92613102 92613171 -8767350 + L1MD1 LINE L1 2326 2396 -4144 635 237 0 0 chr15 92613171 92613306 -8767215 + FLAM_C SINE Alu 1 135 -8 2609 221 66 4 chr15 92613308 92614276 -8766245 + L1MD1 LINE L1 2390 3413 -3127 18142 112 22 7 chr15 92614276 92616894 -8763627 - Charlie3 DNA MER1_type -4 2706 47 1828 227 96 20 chr15 92616896 92617345 -8763176 + L1MA1 LINE L1 301 783 -6782 687 97 70 0 chr15 92617340 92617454 -8763067 + L1PA8 LINE L1 5220 5341 -805 * 1550 101 0 5 chr15 92617454 92617689 -8762832 + L1PA8 LINE L1 5949 6172 0 10966 145 26 7 chr15 92617690 92620803 -8759718 + L1MA1 LINE L1 4507 7686 -35 405 0 0 0 chr15 92620803 92620848 -8759673 + (TA)n Simple_repeat Simple_repeat 2 46 0 10966 145 26 7 chr15 92620848 92620879 -8759642 + L1MA1 LINE L1 7686 7715 -6 2689 231 43 44 chr15 92620915 92623185 -8757336 + L1MD1 LINE L1 3424 5695 -941 2641 45 3 0 chr15 92623185 92623495 -8757026 + AluY SINE Alu 1 311 0 2689 231 43 44 chr15 92623495 92623640 -8756881 + L1MD1 LINE L1 5695 5839 -797 2327 103 3 0 chr15 92623640 92623940 -8756581 + AluSp SINE Alu 1 301 -12 2689 231 43 44 chr15 92623940 92624254 -8756267 + L1MD1 LINE L1 5839 6311 -325 460 311 25 47 chr15 92625408 92625607 -8754914 - MLT1K LTR MaLR -224 364 171 1537 322 65 20 chr15 92625607 92626269 -8754252 - MER115 DNA AcHobo -1 692 1 460 311 25 47 chr15 92626269 92626346 -8754175 - MLT1K LTR MaLR -417 171 94 227 346 33 26 chr15 92626897 92627050 -8753471 - MIR SINE MIR -74 188 35 292 290 60 10 chr15 92627662 92627762 -8752759 + MER81 DNA DNA 1 105 -9 680 230 56 11 chr15 92627805 92627983 -8752538 + MER58A DNA MER1_type 30 215 -9 288 269 45 52 chr15 92628474 92628608 -8751913 + MIR SINE MIR 130 262 0 234 0 0 0 chr15 92628986 92629012 -8751509 + (T)n Simple_repeat Simple_repeat 1 26 0 319 361 44 28 chr15 92629462 92629642 -8750879 - MIR3 SINE MIR -10 198 16 343 336 35 21 chr15 92630242 92630385 -8750136 + MIR SINE MIR 47 191 -71 225 65 0 0 chr15 92630423 92630454 -8750067 + (TTA)n Simple_repeat Simple_repeat 2 32 0 228 281 16 31 chr15 92630454 92630518 -8750003 + L2 LINE L2 2549 2611 -703 377 308 21 28 chr15 92630603 92630746 -8749775 - MER46C DNA MER2_type -4 334 193 3078 206 7 2 chr15 92630760 92631310 -8749211 - MER68 LTR ERV1 0 562 10 507 207 0 114 chr15 92631318 92631511 -8749010 - MER46C DNA MER2_type -158 180 10 2921 6 0 0 chr15 92631546 92631861 -8748660 - AluYb8 SINE Alu -3 315 1 194 125 0 25 chr15 92631867 92631907 -8748614 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 1114 200 65 77 chr15 92631929 92632142 -8748379 + L1MC1 LINE L1 1913 2127 -4269 2212 98 0 0 chr15 92632142 92632427 -8748094 + AluSg SINE Alu 1 285 -25 255 61 0 0 chr15 92632427 92632460 -8748061 + (TA)n Simple_repeat Simple_repeat 1 33 0 1114 200 65 77 chr15 92632460 92632724 -8747797 + L1MC1 LINE L1 2125 2385 -4011 * 1895 229 18 60 chr15 92632723 92633353 -8747168 + L1MC1 LINE L1 4721 5323 -892 900 159 6 0 chr15 92633800 92633970 -8746551 + L1MC1 LINE L1 5325 5495 -907 2480 169 18 2 chr15 92633970 92634406 -8746115 + L1MC1 LINE L1 5957 6402 0 709 259 48 3 chr15 92634408 92634698 -8745823 + L1MEc LINE L1 2342 2644 -3571 44 0 0 0 chr15 92634727 92634771 -8745750 + AT_rich Low_complexity Low_complexity 1 44 0 634 237 44 22 chr15 92634841 92635115 -8745406 + L1MEc LINE L1 2668 2947 -3268 250 232 18 0 chr15 92635176 92635232 -8745289 + L1MA10 LINE L1 6214 6270 -64 180 111 0 0 chr15 92635235 92635262 -8745259 + (CATA)n Simple_repeat Simple_repeat 4 30 0 2648 42 0 0 chr15 92636144 92636452 -8744069 + AluY SINE Alu 1 308 -3 2067 211 15 41 chr15 92636968 92637519 -8743002 + L1MD3 LINE L1 6256 6357 -2 2079 113 11 0 chr15 92638016 92638322 -8742199 - AluSx SINE Alu 0 309 1 21476 31 3 0 chr15 92638364 92641728 -8738793 - L1PA4 LINE L1 -1 6154 2783 1491 196 62 10 chr15 92641854 92642241 -8738280 + LTR37A LTR ERV1 8 414 -12 318 256 77 13 chr15 92642717 92642795 -8737726 + MIR SINE MIR 13 95 -167 3754 40 4 15 chr15 92642934 92643404 -8737117 + L1PA4 LINE L1 5691 6155 0 214 309 33 72 chr15 92643492 92643644 -8736877 - MIR3 SINE MIR -45 163 18 11406 157 22 10 chr15 92644104 92644890 -8735631 + L1MA3 LINE L1 3049 3824 -2550 2097 127 0 7 chr15 92644890 92645197 -8735324 + AluY SINE Alu 1 305 -6 11406 157 22 10 chr15 92645197 92647694 -8732827 + L1MA3 LINE L1 3824 6374 0 9148 84 13 7 chr15 92647773 92649806 -8730715 + L1PA8 LINE L1 4069 6102 -70 455 125 25 0 chr15 92649806 92649886 -8730635 + AluJ/FRAM SINE Alu 231 312 0 963 221 74 75 chr15 92649895 92650312 -8730209 + L1ME2 LINE L1 5631 6058 -106 258 286 44 50 chr15 92650443 92650625 -8729896 + L1MC4 LINE L1 7861 8041 -1 192 237 269 21 chr15 92650770 92650863 -8729658 - MIR SINE MIR -78 184 69 206 214 89 18 chr15 92652070 92652126 -8728395 - MIR3 SINE MIR -139 69 10 2609 259 94 50 chr15 92652225 92653511 -8727010 + L1MEc LINE L1 35 1377 -5019 1534 223 104 27 chr15 92653566 92654085 -8726436 + MLT1F1 LTR MaLR 10 565 -2 2238 124 0 0 chr15 92654270 92654577 -8725944 - AluSg1 SINE Alu -2 307 1 248 364 152 13 chr15 92656984 92657135 -8723386 + L2 LINE L2 3070 3241 -31 225 360 78 10 chr15 92660079 92660284 -8720237 + MIR SINE MIR 45 262 0 495 261 50 96 chr15 92660384 92660645 -8719876 - MIR SINE MIR -2 260 12 446 303 192 5 chr15 92662931 92663139 -8717382 - MIR SINE MIR -15 247 1 582 140 132 0 chr15 92664279 92664393 -8716128 - MER69 DNA AcHobo 0 2526 2398 2188 110 3 10 chr15 92665035 92665335 -8715186 + AluSq SINE Alu 1 298 -15 689 209 80 25 chr15 92665373 92665536 -8714985 + MER5A DNA MER1_type 18 189 0 685 247 85 14 chr15 92665655 92665878 -8714643 - MIR SINE MIR -4 258 20 327 49 0 0 chr15 92666430 92666471 -8714050 + (T)n Simple_repeat Simple_repeat 1 41 0 323 253 40 61 chr15 92666698 92666797 -8713724 - L2 LINE L2 -1 3271 3175 217 304 128 47 chr15 92666874 92667282 -8713239 - L2 LINE L2 -669 2645 2205 5043 115 26 30 chr15 92667491 92668271 -8712250 + MER4E LTR ERV1 3 779 0 422 351 71 0 chr15 92668590 92668744 -8711777 - L2 LINE L2 -1 3271 3107 252 90 0 90 chr15 92669077 92669155 -8711366 + (CAAAAA)n Simple_repeat Simple_repeat 2 72 0 368 256 63 8 chr15 92670279 92670401 -8710120 - MIR SINE MIR -62 146 62 470 291 189 5 chr15 92672251 92672447 -8708074 + MIR SINE MIR 28 259 -3 334 220 22 22 chr15 92672952 92673043 -8707478 - L1MC4 LINE L1 -1337 6705 6615 219 187 0 66 chr15 92673046 92673137 -8707384 + (TATG)n Simple_repeat Simple_repeat 1 85 0 228 303 22 22 chr15 92673148 92673237 -8707284 - L1MC4 LINE L1 -1339 6703 6615 * 238 329 24 0 chr15 92673209 92673294 -8707227 + L1MC4 LINE L1 6615 6701 -1341 225 316 51 0 chr15 92673305 92673384 -8707137 + L1MC4 LINE L1 6619 6701 -1341 422 199 21 54 chr15 92673385 92673571 -8706950 + (CGTA)n Simple_repeat Simple_repeat 1 180 0 331 294 25 8 chr15 92673576 92673695 -8706826 + (CATATA)n Simple_repeat Simple_repeat 4 124 0 377 130 29 0 chr15 92673936 92674005 -8706516 + C-rich Low_complexity Low_complexity 4 74 0 2408 79 0 10 chr15 92675171 92675474 -8705047 + AluY SINE Alu 1 300 -11 198 323 61 10 chr15 92675485 92675584 -8704937 - L2 LINE L2 -1 3271 3168 358 128 0 0 chr15 92676327 92676374 -8704147 - MLT2A1 LTR ERVL -135 309 263 998 127 25 71 chr15 92677775 92677972 -8702549 - THE1B LTR MaLR -2 362 175 260 28 111 0 chr15 92677972 92678008 -8702513 - MLT2A1 LTR ERVL 0 444 405 382 57 0 57 chr15 92678008 92678096 -8702425 + (TA)n Simple_repeat Simple_repeat 1 83 0 3280 65 38 5 chr15 92678096 92678513 -8702008 - MLT2A1 LTR ERVL -13 431 1 1030 132 42 6 chr15 92678513 92678679 -8701842 - THE1B LTR MaLR -185 179 8 1925 171 0 0 chr15 92679106 92679405 -8701116 + AluSx SINE Alu 1 299 -13 874 211 32 41 chr15 92679994 92680294 -8700227 + MLT1A2 LTR MaLR 1 370 -4 242 348 0 0 chr15 92680409 92680498 -8700023 + (TA)n Simple_repeat Simple_repeat 2 90 0 400 300 17 8 chr15 92681298 92681418 -8699103 - MIR SINE MIR -118 144 24 1233 246 78 28 chr15 92682048 92682563 -8697958 - L2 LINE L2 -22 3291 2742 23 33 0 0 chr15 92682901 92682931 -8697590 + AT_rich Low_complexity Low_complexity 1 30 0 229 333 10 10 chr15 92683011 92683107 -8697414 + L2 LINE L2 3177 3272 0 349 253 42 11 chr15 92683169 92683264 -8697257 - MIR SINE MIR -155 107 10 735 249 122 10 chr15 92683646 92683843 -8696678 - MER58A DNA MER1_type 0 224 6 1046 245 42 58 chr15 92685010 92685451 -8695070 + L1ME1 LINE L1 5743 6184 0 563 198 0 21 chr15 92685452 92685548 -8694973 + AluJ/FLAM SINE Alu 2 95 -217 60 77 0 0 chr15 92685587 92685717 -8694804 + AT_rich Low_complexity Low_complexity 1 130 0 1081 179 0 15 chr15 92685717 92685918 -8694603 + AluJo SINE Alu 115 312 0 2241 120 0 7 chr15 92685964 92686273 -8694248 - AluSx SINE Alu -5 307 1 2329 103 0 0 chr15 92688367 92688669 -8691852 + AluSg SINE Alu 1 302 -8 196 332 125 19 chr15 92690675 92690883 -8689638 + MIR SINE MIR 23 252 -10 230 266 32 29 chr15 92691194 92691314 -8689207 - L1P4 LINE L1 -370 5796 5674 622 301 25 5 chr15 92691342 92691538 -8688983 + MIR SINE MIR 6 205 -57 372 255 133 21 chr15 92691539 92691727 -8688794 - L1M4 LINE L1 -819 5327 5119 241 281 87 27 chr15 92691866 92692051 -8688470 - L1MEd LINE L1 -4999 1120 925 2471 73 30 0 chr15 92693219 92693519 -8687002 - AluSg SINE Alu -1 309 1 324 260 22 94 chr15 92694221 92694345 -8686176 - MER117 DNA MER1_type -17 180 71 979 232 0 0 chr15 92694345 92694530 -8685991 - MER5A DNA MER1_type 0 189 5 324 260 22 94 chr15 92694530 92694586 -8685935 - MER117 DNA MER1_type -126 71 13 2485 67 3 0 chr15 92695088 92695387 -8685134 - AluY SINE Alu -11 300 1 196 282 24 97 chr15 92695663 92695787 -8684734 - MIR3 SINE MIR -8 200 86 256 274 212 28 chr15 92695838 92695958 -8684563 + MIR SINE MIR 50 147 -115 2596 127 58 0 chr15 92695958 92696385 -8684136 + L1MA4 LINE L1 5841 6292 -8 256 274 212 28 chr15 92696385 92696443 -8684078 + MIR SINE MIR 147 261 -1 2330 177 30 32 chr15 92696628 92697063 -8683458 - Tigger2a DNA MER2_type 0 434 1 711 228 88 16 chr15 92697353 92697546 -8682975 - MER58A DNA MER1_type -17 207 1 244 250 0 67 chr15 92698770 92698890 -8681631 + CT-rich Low_complexity Low_complexity 1 112 0 213 145 43 43 chr15 92699715 92699784 -8680737 + (TTA)n Simple_repeat Simple_repeat 2 70 0 2425 82 0 3 chr15 92700759 92701065 -8679456 - AluSc SINE Alu -4 305 1 473 309 88 69 chr15 92701209 92701519 -8679002 - L1ME LINE L1 -337 5784 5461 2178 91 0 45 chr15 92701519 92701828 -8678693 - AluSx SINE Alu -17 295 1 473 309 88 69 chr15 92701828 92701983 -8678538 - L1ME LINE L1 -660 5461 5310 2501 68 0 3 chr15 92703065 92703374 -8677147 - AluY SINE Alu -3 308 1 1118 275 141 20 chr15 92703645 92704147 -8676374 - MLT1G LTR MaLR -18 572 10 1795 212 39 4 chr15 92704244 92704288 -8676233 - L1MA9 LINE L1 -38 6274 6233 2261 133 82 12 chr15 92704288 92704688 -8675833 - MSTA LTR MaLR 0 428 1 1795 212 39 4 chr15 92704688 92705106 -8675415 - L1MA9 LINE L1 -79 6233 5796 1780 174 3 0 chr15 92705677 92705980 -8674541 - AluJb SINE Alu 0 304 1 21 0 0 0 chr15 92707391 92707412 -8673109 + AT_rich Low_complexity Low_complexity 1 21 0 1890 117 0 11 chr15 92707918 92708183 -8672338 + AluSg SINE Alu 18 279 -31 22 56 0 0 chr15 92708335 92708371 -8672150 + AT_rich Low_complexity Low_complexity 1 36 0 221 409 0 0 chr15 92709174 92709267 -8671254 - MIR SINE MIR -66 142 50 1552 196 0 47 chr15 92709477 92709794 -8670727 - AluJo SINE Alu -10 302 1 415 303 75 52 chr15 92710504 92710771 -8669750 + L1MC4 LINE L1 5607 5879 -1929 330 294 0 29 chr15 92711609 92711711 -8668810 + L1MC4 LINE L1 6605 6703 -1339 219 267 0 0 chr15 92712613 92712658 -8667863 + (TG)n Simple_repeat Simple_repeat 1 45 0 262 238 88 12 chr15 92713092 92713172 -8667349 - L2 LINE L2 -4 3309 3224 180 0 0 0 chr15 92713435 92713455 -8667066 + (T)n Simple_repeat Simple_repeat 1 20 0 201 265 0 0 chr15 92717499 92717582 -8662939 + (TA)n Simple_repeat Simple_repeat 2 84 0 318 277 0 43 chr15 92717612 92717706 -8662815 - L1MC4 LINE L1 -1339 6703 6614 213 240 0 0 chr15 92717712 92717762 -8662759 + (TA)n Simple_repeat Simple_repeat 2 51 0 617 213 6 0 chr15 92717846 92718020 -8662501 + (TA)n Simple_repeat Simple_repeat 1 175 0 610 287 108 5 chr15 92718589 92718812 -8661709 + MIR SINE MIR 11 256 -6 21 0 0 0 chr15 92720263 92720284 -8660237 + AT_rich Low_complexity Low_complexity 1 21 0 276 77 0 0 chr15 92722831 92722870 -8657651 + (CA)n Simple_repeat Simple_repeat 1 39 0 582 144 6 42 chr15 92723271 92723438 -8657083 + CT-rich Low_complexity Low_complexity 2 162 0 231 181 42 0 chr15 92723945 92724017 -8656504 + CT-rich Low_complexity Low_complexity 1 75 0 307 210 70 28 chr15 92724452 92724595 -8655926 + (TCTA)n Simple_repeat Simple_repeat 1 149 0 2136 62 0 0 chr15 92725092 92725349 -8655172 + AluY SINE Alu 42 298 -13 615 248 87 0 chr15 92725477 92725638 -8654883 + MER5A DNA MER1_type 15 189 0 347 257 171 46 chr15 92725757 92725818 -8654703 - MER96 DNA MER1_type -3 172 120 2001 103 66 0 chr15 92725818 92726091 -8654430 + AluSx SINE Alu 1 291 -21 347 257 171 46 chr15 92726091 92726181 -8654340 - MER96 DNA MER1_type -55 120 2 29 28 0 0 chr15 92726540 92726576 -8653945 + AT_rich Low_complexity Low_complexity 1 36 0 266 239 0 0 chr15 92729362 92729429 -8651092 + (TA)n Simple_repeat Simple_repeat 2 68 0 189 74 0 0 chr15 92729526 92729553 -8650968 + (TAA)n Simple_repeat Simple_repeat 3 29 0 2074 123 29 29 chr15 92729796 92730171 -8650350 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr15 92731543 92731564 -8648957 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr15 92731849 92731875 -8648646 + AT_rich Low_complexity Low_complexity 1 26 0 191 286 0 48 chr15 92732501 92732564 -8647957 - MIR SINE MIR -122 140 81 207 69 0 0 chr15 92733054 92733083 -8647438 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 295 324 43 29 chr15 92735182 92735321 -8645200 - MIR3 SINE MIR -49 159 19 257 360 22 0 chr15 92735454 92735543 -8644978 - MER20B DNA MER1_type -619 164 74 279 0 0 0 chr15 92736597 92736628 -8643893 + (T)n Simple_repeat Simple_repeat 1 31 0 24 0 0 0 chr15 92737625 92737649 -8642872 + AT_rich Low_complexity Low_complexity 1 24 0 288 0 0 0 chr15 92737872 92737904 -8642617 + (T)n Simple_repeat Simple_repeat 1 32 0 328 331 101 37 chr15 92740011 92740307 -8640214 - L2 LINE L2 -44 3228 2914 21 36 0 0 chr15 92740837 92740865 -8639656 + AT_rich Low_complexity Low_complexity 1 28 0 738 226 35 15 chr15 92740909 92741108 -8639413 + MER58A DNA MER1_type 1 203 -21 1072 133 0 30 chr15 92748476 92748642 -8631879 - AluSg/x SINE Alu -18 294 134 1957 165 59 20 chr15 92751750 92752156 -8628365 - MSTA LTR MaLR -6 422 1 186 43 0 0 chr15 92752354 92752377 -8628144 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 181 323 219 0 chr15 92753221 92753317 -8627204 + MIR3 SINE MIR 44 160 -48 * 196 213 200 0 chr15 92753286 92753361 -8627160 + MIR SINE MIR 162 251 -11 1616 203 0 35 chr15 92755026 92755342 -8625179 + AluJo SINE Alu 1 305 -7 273 246 15 0 chr15 92755653 92755718 -8624803 + L2 LINE L2 3206 3271 -1 212 171 0 0 chr15 92755843 92755884 -8624637 + T-rich Low_complexity Low_complexity 1 41 0 399 59 59 70 chr15 92756466 92756722 -8623799 + (TA)n Simple_repeat Simple_repeat 1 253 0 2226 122 0 0 chr15 92757272 92757566 -8622955 + AluSx SINE Alu 1 294 -18 346 298 8 16 chr15 92759060 92759181 -8621340 + LTR67 LTR ERVL 432 551 -6 2160 127 48 20 chr15 92760232 92760586 -8619935 - THE1B LTR MaLR 0 364 1 243 0 0 0 chr15 92763589 92763616 -8616905 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 357 118 54 11 chr15 92763874 92763967 -8616554 + CT-rich Low_complexity Low_complexity 1 97 0 881 240 9 18 chr15 92764000 92764221 -8616300 - MER20 DNA MER1_type 0 219 1 1078 325 62 11 chr15 92764362 92764942 -8615579 - L2 LINE L2 0 3313 2713 513 337 109 0 chr15 92765468 92765670 -8614851 - MIR SINE MIR -37 225 2 705 24 0 0 chr15 92766836 92766919 -8613602 + (TA)n Simple_repeat Simple_repeat 2 84 0 2376 112 0 0 chr15 92767504 92767816 -8612705 - AluSx SINE Alu 0 312 1 2230 92 0 3 chr15 92768876 92769169 -8611352 + AluY SINE Alu 1 292 -19 2226 98 0 10 chr15 92769319 92769641 -8610880 + AluSg SINE Alu 1 310 0 259 239 84 0 chr15 92769665 92769736 -8610785 + MIR SINE MIR 118 194 -68 2321 115 0 10 chr15 92770554 92770868 -8609653 + AluSx SINE Alu 1 311 -1 488 314 51 59 chr15 92770917 92771153 -8609368 + MIR SINE MIR 10 243 -19 2285 114 0 0 chr15 92771270 92771569 -8608952 + AluY SINE Alu 1 299 -12 21 71 0 0 chr15 92772492 92772534 -8607987 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr15 92773188 92773212 -8607309 + AT_rich Low_complexity Low_complexity 1 24 0 255 234 81 4 chr15 92773539 92773703 -8606818 + L1ME LINE L1 5722 5789 -373 1527 221 20 6 chr15 92775109 92775467 -8605054 - L1MD3 LINE L1 -23 7972 7610 252 246 44 70 chr15 92776177 92776291 -8604230 + MIR SINE MIR 73 183 -79 207 360 0 0 chr15 92776873 92776948 -8603573 + CT-rich Low_complexity Low_complexity 1 75 0 436 178 305 0 chr15 92778053 92778171 -8602350 - MIR SINE MIR -21 241 88 279 146 0 0 chr15 92778301 92778356 -8602165 + (TC)n Simple_repeat Simple_repeat 2 56 0 206 366 84 0 chr15 92779423 92779565 -8600956 - MIR3 SINE MIR -28 180 27 2248 115 3 0 chr15 92781081 92781385 -8599136 - AluSg SINE Alu -5 305 1 640 271 64 18 chr15 92782950 92783168 -8597353 - MIR SINE MIR -33 229 2 378 0 0 0 chr15 92784562 92784604 -8595917 + (CA)n Simple_repeat Simple_repeat 1 42 0 2918 57 31 0 chr15 92785796 92786182 -8594339 + MLT2A1 LTR ERVL 1 398 -46 330 71 0 36 chr15 92786241 92786297 -8594224 + MLT2A1 LTR ERVL 390 443 -1 215 233 50 0 chr15 92786472 92786532 -8593989 + CT-rich Low_complexity Low_complexity 2 64 0 255 204 0 0 chr15 92786647 92786701 -8593820 + CT-rich Low_complexity Low_complexity 2 55 0 543 157 185 0 chr15 92787240 92787348 -8593173 + FLAM_C SINE Alu 11 138 -5 279 384 18 0 chr15 92787451 92787563 -8592958 + L2 LINE L2 3197 3310 -3 186 43 0 0 chr15 92788071 92788094 -8592427 + (T)n Simple_repeat Simple_repeat 1 23 0 261 209 0 0 chr15 92789267 92789334 -8591187 + (ATG)n Simple_repeat Simple_repeat 3 69 0 216 0 0 0 chr15 92790356 92790380 -8590141 + (TG)n Simple_repeat Simple_repeat 2 25 0 23 54 0 0 chr15 92795725 92795762 -8584759 + AT_rich Low_complexity Low_complexity 1 37 0 459 203 8 78 chr15 92796488 92796616 -8583905 + Tigger1 DNA MER2_type 2 120 -2298 8750 123 24 34 chr15 92796619 92798143 -8582378 + Tigger1 DNA MER2_type 910 2418 0 1731 168 49 96 chr15 92798149 92798679 -8581842 - MLT1D LTR MaLR 0 505 1 234 331 99 8 chr15 92799391 92799512 -8581009 + L2 LINE L2 2715 2846 -468 799 159 0 8 chr15 92799648 92799780 -8580741 - FLAM_C SINE Alu 0 133 3 441 223 174 0 chr15 92800039 92800160 -8580361 - MIR SINE MIR -72 190 49 706 268 105 75 chr15 92800862 92801185 -8579336 - L1ME3A LINE L1 -199 6365 6053 796 204 74 0 chr15 92801185 92801361 -8579160 + MER5A DNA MER1_type 1 189 0 706 268 105 75 chr15 92801361 92801671 -8578850 - L1ME3A LINE L1 -511 6053 5709 282 270 146 5 chr15 92801706 92801891 -8578630 - L1ME3A LINE L1 -881 5659 5449 241 189 0 19 chr15 92802342 92802395 -8578126 + A-rich Low_complexity Low_complexity 2 53 0 249 308 101 8 chr15 92802517 92802754 -8577767 + L1M4 LINE L1 3340 3598 -2548 294 298 71 28 chr15 92802761 92802907 -8577614 - L1ME3A LINE L1 -4848 1873 1735 411 38 0 0 chr15 92802907 92802960 -8577561 + (GA)n Simple_repeat Simple_repeat 2 54 0 294 298 71 28 chr15 92802960 92803095 -8577426 - L1ME3A LINE L1 -4986 1735 1580 324 329 108 0 chr15 92803200 92803367 -8577154 - L1ME3A LINE L1 -5081 1459 1275 1854 150 127 18 chr15 92804084 92804470 -8576051 - MSTA LTR MaLR 0 428 1 643 273 82 50 chr15 92804928 92805591 -8574930 - L1ME LINE L1 -863 1627 949 2531 291 146 37 chr15 92805728 92807180 -8573341 + L2 LINE L2 1249 2542 -771 459 0 0 0 chr15 92807180 92807231 -8573290 + (CA)n Simple_repeat Simple_repeat 1 51 0 1959 124 0 60 chr15 92807236 92807567 -8572954 + AluSx SINE Alu 1 311 -1 2531 291 146 37 chr15 92807567 92807904 -8572617 + L2 LINE L2 2545 3247 -66 27 0 0 0 chr15 92808451 92808478 -8572043 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr15 92809154 92809179 -8571342 + AT_rich Low_complexity Low_complexity 1 25 0 2594 236 90 44 chr15 92810255 92810880 -8569641 - L1ME LINE L1 -347 5802 5207 1358 187 88 32 chr15 92810880 92811164 -8569357 - AluJo SINE Alu -12 300 1 2594 236 90 44 chr15 92811164 92811636 -8568885 - L1ME LINE L1 -942 5207 4758 2109 127 6 16 chr15 92811636 92811951 -8568570 - AluSx SINE Alu 0 312 1 2594 236 90 44 chr15 92811951 92812399 -8568122 - L1ME LINE L1 -1391 4758 4185 2783 19 0 0 chr15 92812406 92812717 -8567804 - AluYa5 SINE Alu 0 311 1 478 276 123 51 chr15 92812719 92813114 -8567407 - L1ME LINE L1 -5491 628 195 22 0 0 0 chr15 92813565 92813587 -8566934 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr15 92813942 92813965 -8566556 + (A)n Simple_repeat Simple_repeat 1 23 0 273 279 155 32 chr15 92814293 92814609 -8565912 + L1M4 LINE L1 4487 4841 -1305 344 289 94 55 chr15 92815215 92815450 -8565071 + L1M4 LINE L1 3714 3957 -2189 426 340 96 21 chr15 92815633 92815968 -8564553 + L1M4 LINE L1 4051 4410 -1736 294 289 9 35 chr15 92818272 92818386 -8562135 + (TATG)n Simple_repeat Simple_repeat 2 112 0 311 330 26 0 chr15 92818416 92818531 -8561990 - MIR SINE MIR -65 197 80 22 0 0 0 chr15 92819834 92819856 -8560665 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr15 92820769 92820795 -8559726 + (A)n Simple_repeat Simple_repeat 1 26 0 1885 223 70 17 chr15 92820856 92821331 -8559190 - MER21B LTR ERV1 -264 599 100 473 220 0 22 chr15 92821461 92821552 -8558969 - MER21B LTR ERV1 -774 89 1 1585 174 64 0 chr15 92824184 92824466 -8556055 - AluSx SINE Alu -12 300 1 1258 172 40 4 chr15 92825250 92825477 -8555044 + MER46A DNA MER2_type 2 236 0 1745 82 5 0 chr15 92825624 92825844 -8554677 + AluSc SINE Alu 75 295 -14 21 0 0 0 chr15 92826029 92826050 -8554471 + AT_rich Low_complexity Low_complexity 1 21 0 287 337 77 17 chr15 92826060 92826241 -8554280 - MIR SINE MIR -56 206 15 236 298 0 0 chr15 92827122 92827179 -8553342 + (CGTG)n Simple_repeat Simple_repeat 4 60 0 24 32 0 0 chr15 92827842 92827873 -8552648 + AT_rich Low_complexity Low_complexity 1 31 0 473 332 43 14 chr15 92828704 92828912 -8551609 - MIR SINE MIR -22 240 27 664 208 154 66 chr15 92831554 92831629 -8548892 - MER114 LTR ERV -159 489 422 2014 117 0 3 chr15 92831629 92831911 -8548610 - AluSx SINE Alu -31 281 1 664 208 154 66 chr15 92831911 92832223 -8548298 - MER114 LTR ERV -226 422 56 1939 113 41 3 chr15 92832223 92832514 -8548007 - AluSc SINE Alu -7 302 1 664 208 154 66 chr15 92832514 92832567 -8547954 - MER114 LTR ERV -592 56 9 304 294 24 0 chr15 92835241 92835326 -8545195 - MER94 DNA DNA -36 98 12 586 215 7 7 chr15 92835394 92835529 -8544992 - MER105 DNA DNA -26 178 44 801 267 0 27 chr15 92835566 92835753 -8544768 - MER58A DNA MER1_type -40 184 3 595 215 34 112 chr15 92836610 92836851 -8543670 - MIR SINE MIR -7 255 34 2370 91 0 0 chr15 92837967 92838274 -8542247 + AluSx SINE Alu 1 307 -5 717 289 80 13 chr15 92839467 92839692 -8540829 + MIR SINE MIR 22 261 -1 2272 274 133 23 chr15 92839999 92841011 -8539510 - L1MEd LINE L1 -1605 4524 3625 388 35 35 0 chr15 92841011 92841069 -8539452 + (TA)n Simple_repeat Simple_repeat 1 60 0 2272 274 133 23 chr15 92841069 92842043 -8538478 - L1MEd LINE L1 -2504 3625 2278 1721 141 72 16 chr15 92842043 92842362 -8538159 - MER44D DNA MER2_type 0 609 3 2272 274 133 23 chr15 92842362 92842436 -8538085 - L1MEd LINE L1 -3851 2278 2214 439 315 90 38 chr15 92842712 92843265 -8537256 - L1MEd LINE L1 -5025 1094 513 661 323 0 10 chr15 92843809 92844004 -8536517 - MIR SINE MIR -5 257 65 462 333 79 4 chr15 92844998 92845226 -8535295 - MIR SINE MIR 0 262 18 2111 116 25 0 chr15 92845432 92845717 -8534804 - AluSx SINE Alu -20 292 1 342 287 161 14 chr15 92845772 92845915 -8534606 + MIR SINE MIR 84 247 -15 1708 173 7 13 chr15 92846379 92846686 -8533835 + AluJo SINE Alu 5 309 -3 2208 113 3 0 chr15 92848885 92849196 -8531325 + AluSx SINE Alu 1 312 0 195 336 92 23 chr15 92849257 92849388 -8531133 - L3 LINE CR1 -809 768 629 414 296 40 49 chr15 92851149 92851342 -8529179 - MIR SINE MIR -53 209 21 956 86 39 0 chr15 92851366 92851494 -8529027 + AluSq/x SINE Alu 1 133 -179 580 98 20 0 chr15 92853361 92853463 -8527058 + (TAGA)n Simple_repeat Simple_repeat 2 105 0 852 347 140 30 chr15 92858977 92859914 -8520607 - L2 LINE L2 -575 2739 1700 4264 106 8 3 chr15 92860024 92860646 -8519875 + L1PA13 LINE L1 5525 6149 -14 215 286 29 0 chr15 92860904 92860974 -8519547 - MIR SINE MIR -7 255 184 277 268 49 21 chr15 92861040 92861182 -8519339 + L1M4 LINE L1 3587 3732 -2414 12862 193 74 13 chr15 92861249 92862227 -8518294 + L1MA4A LINE L1 67 984 -5866 240 35 0 0 chr15 92862227 92862256 -8518265 + (CA)n Simple_repeat Simple_repeat 1 29 0 12862 193 74 13 chr15 92862256 92863581 -8516940 + L1MA4A LINE L1 984 2565 -4285 195 42 0 0 chr15 92863581 92863605 -8516916 + (CAT)n Simple_repeat Simple_repeat 2 25 0 12862 193 74 13 chr15 92863605 92864007 -8516514 + L1MA4A LINE L1 2565 2941 -3909 12654 176 29 45 chr15 92864153 92865252 -8515269 + L1MA4A LINE L1 2936 4050 -2955 1077 57 14 0 chr15 92865252 92865393 -8515128 + L1PA4 LINE L1 6013 6155 0 12654 176 29 45 chr15 92865393 92867306 -8513215 + L1MA4A LINE L1 4050 5901 -1104 1723 176 0 17 chr15 92867306 92867625 -8512896 + AluJb SINE Alu 1 314 0 12654 176 29 45 chr15 92867625 92868709 -8511812 + L1MA4A LINE L1 5901 7000 -5 903 211 174 34 chr15 92868748 92869132 -8511389 + L1M4 LINE L1 4482 4919 -1227 9565 83 13 14 chr15 92869135 92870443 -8510078 + HERVL-A2 LTR ERVL 4348 5654 0 1183 74 37 0 chr15 92870443 92870605 -8509916 + MLT2A2 LTR ERVL 1 168 -285 204 40 0 0 chr15 92870874 92870899 -8509622 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1335 212 0 19 chr15 92871664 92871923 -8508598 - AluJo SINE Alu -28 284 31 359 318 22 60 chr15 92872988 92873175 -8507346 + MIR SINE MIR 10 186 -65 330 26 0 0 chr15 92873228 92873267 -8507254 + (TA)n Simple_repeat Simple_repeat 2 40 0 592 215 17 51 chr15 92873346 92873504 -8507017 - L1ME3A LINE L1 -20 6150 5997 1643 212 37 6 chr15 92873504 92873858 -8506663 + MLT1A1 LTR MaLR 1 365 0 592 215 17 51 chr15 92873858 92873876 -8506645 - L1ME3A LINE L1 -173 5997 5980 868 234 0 78 chr15 92873879 92874110 -8506411 - MER20 DNA MER1_type 0 219 7 1905 148 8 57 chr15 92874501 92874872 -8505649 + THE1A LTR MaLR 1 353 -2 11568 96 4 1 chr15 92874873 92876448 -8504073 + THE1A-int LTR MaLR 1 1580 0 1758 140 47 52 chr15 92876450 92876814 -8503707 + THE1B LTR MaLR 3 364 0 890 252 108 26 chr15 92876943 92877399 -8503122 - L1MC5 LINE L1 -384 7577 7085 3038 207 36 33 chr15 92877530 92878283 -8502238 - L1MA9 LINE L1 -33 6279 5525 1013 214 23 83 chr15 92878282 92878633 -8501888 - L1MC5 LINE L1 -1015 6946 6617 * 1816 112 3 72 chr15 92878806 92878934 -8501587 + THE1B LTR MaLR 62 197 -167 1674 53 0 0 chr15 92878934 92879141 -8501380 + L1PA5 LINE L1 5948 6154 0 1816 112 3 72 chr15 92879141 92879333 -8501188 + THE1B LTR MaLR 197 360 -4 888 311 44 17 chr15 92879347 92879829 -8500692 - L1MC5 LINE L1 -2059 5749 5255 260 299 62 0 chr15 92880180 92880277 -8500244 - HAL1b LINE L1 -1001 347 245 1179 261 18 25 chr15 92880292 92880687 -8499834 - L1ME LINE L1 -505 5657 5266 602 181 160 0 chr15 92880723 92880867 -8499654 - MLT1A1 LTR MaLR -198 167 1 12963 214 51 26 chr15 92881625 92883505 -8497016 + L1MA5 LINE L1 2 1834 -5108 1725 193 17 0 chr15 92883505 92883806 -8496715 + AluJo SINE Alu 1 306 -6 12963 214 51 26 chr15 92883806 92888347 -8492174 + L1MA5 LINE L1 1834 6935 -7 1406 246 27 64 chr15 92888352 92888621 -8491900 - MLT1D LTR MaLR -34 471 194 2130 100 40 0 chr15 92888621 92888922 -8491599 - AluSq SINE Alu 0 313 1 2780 10 0 0 chr15 92888932 92889236 -8491285 - AluYa5 SINE Alu -7 304 1 1406 246 27 64 chr15 92889236 92889439 -8491082 - MLT1D LTR MaLR -320 185 6 255 278 56 0 chr15 92891047 92891119 -8489402 + MIR SINE MIR 72 147 -115 351 0 0 0 chr15 92891151 92891174 -8489347 + (CA)n Simple_repeat Simple_repeat 1 62 0 351 0 0 0 chr15 92891174 92891213 -8489308 + (CA)n Simple_repeat Simple_repeat 2 40 0 2379 145 28 3 chr15 92891452 92892068 -8488453 + L1PB4 LINE L1 5422 6144 -12 248 306 85 45 chr15 92892486 92892933 -8487588 - HAL1 LINE L1 -983 1524 1060 239 177 0 97 chr15 92893418 92893480 -8487041 + L1MA9 LINE L1 2 57 -6084 5299 182 35 39 chr15 92893573 92895347 -8485174 + L1MA9 LINE L1 4077 5851 -525 423 0 0 0 chr15 92895347 92895394 -8485127 + (CA)n Simple_repeat Simple_repeat 2 48 0 5299 182 35 39 chr15 92895394 92895917 -8484604 + L1MA9 LINE L1 5851 6374 -2 809 215 52 6 chr15 92895923 92896095 -8484426 - MIR SINE MIR -71 191 12 195 189 0 0 chr15 92898299 92898336 -8482185 - L2 LINE L2 0 3272 3236 2136 172 119 33 chr15 92898934 92899481 -8481040 - LTR49 LTR ERV1 -1 594 1 2172 93 0 0 chr15 92899684 92899962 -8480559 - AluY SINE Alu -13 298 21 1971 123 13 7 chr15 92899964 92900265 -8480256 - AluSg SINE Alu -7 303 1 4103 148 26 6 chr15 92900351 92901047 -8479474 - MER50 LTR ERV1 -20 714 5 189 214 18 71 chr15 92901258 92901314 -8479207 - L2 LINE L2 0 3272 3220 1863 179 54 98 chr15 92901359 92901952 -8478569 - LTR8A LTR ERV1 0 727 161 556 182 70 42 chr15 92902037 92902180 -8478341 - LTR8 LTR ERV1 -543 148 2 233 346 98 28 chr15 92903183 92903437 -8477084 + MLT1K LTR MaLR 133 404 -184 331 253 121 46 chr15 92903651 92903825 -8476696 - L1M4 LINE L1 -763 5383 5197 465 351 14 32 chr15 92903922 92904204 -8476317 + L1M4 LINE L1 4293 4569 -1577 1913 107 7 4 chr15 92904507 92904779 -8475742 - AluSc SINE Alu -2 307 35 369 0 0 0 chr15 92904993 92905034 -8475487 + (TG)n Simple_repeat Simple_repeat 2 42 0 649 343 73 21 chr15 92905112 92905579 -8474942 + L2 LINE L2 2486 2976 -338 279 270 106 48 chr15 92905735 92905924 -8474597 + L2 LINE L2 3112 3311 -2 73 32 0 0 chr15 92906453 92906547 -8473974 + AT_rich Low_complexity Low_complexity 1 94 0 1548 229 35 17 chr15 92908367 92908773 -8471748 - MLT1C LTR MaLR 0 467 55 1215 225 58 50 chr15 92908810 92909206 -8471315 + MLT2D LTR ERVL 16 414 0 1441 203 147 13 chr15 92909442 92909930 -8470591 + Charlie1 DNA MER1_type 5 1855 -906 2026 189 140 11 chr15 92910030 92910674 -8469847 + Charlie1 DNA MER1_type 2025 2751 -10 346 342 22 33 chr15 92910726 92910910 -8469611 - L2 LINE L2 -684 2630 2449 982 235 16 92 chr15 92910929 92911355 -8469166 - MLT2C1 LTR ERVL -2 395 2 2220 215 35 20 chr15 92911360 92912083 -8468438 - ERVL LTR ERVL -5 5649 4930 903 174 0 0 chr15 92912077 92912226 -8468295 + ERVL LTR ERVL 4335 4483 -1281 * 302 293 189 27 chr15 92912321 92912543 -8467978 - L2 LINE L2 -1022 2292 2035 25 0 0 0 chr15 92912768 92912793 -8467728 + AT_rich Low_complexity Low_complexity 1 25 0 187 352 29 29 chr15 92913420 92913525 -8466996 + MIR SINE MIR 8 112 -150 793 278 54 0 chr15 92913585 92913808 -8466713 + MIR SINE MIR 17 251 -11 208 348 90 0 chr15 92913825 92913914 -8466607 - L2 LINE L2 -15 3298 3202 180 200 0 0 chr15 92914161 92914201 -8466320 + GA-rich Low_complexity Low_complexity 2 41 0 1435 196 82 33 chr15 92914403 92914770 -8465751 + MSTD LTR MaLR 3 381 -15 198 0 0 0 chr15 92914780 92914802 -8465719 + (CA)n Simple_repeat Simple_repeat 1 22 0 310 325 148 32 chr15 92914806 92915185 -8465336 - L2 LINE L2 -672 2642 2220 247 299 112 29 chr15 92915365 92915606 -8464915 - L2 LINE L2 -1402 1912 1652 265 254 0 0 chr15 92915871 92915934 -8464587 - MER5A DNA MER1_type -80 109 47 679 369 54 22 chr15 92916132 92916577 -8463944 + L2 LINE L2 2854 3312 -1 244 111 0 0 chr15 92916852 92916888 -8463633 - U2 snRNA snRNA -152 36 1 245 229 202 18 chr15 92917350 92917459 -8463062 - LTR16C LTR ERVL 0 491 363 358 297 20 0 chr15 92917700 92917801 -8462720 - LTR16C LTR ERVL -241 250 148 31 44 0 0 chr15 92918258 92918303 -8462218 + AT_rich Low_complexity Low_complexity 1 45 0 256 391 11 0 chr15 92920306 92920398 -8460123 - L2 LINE L2 -47 3225 3133 25 0 0 0 chr15 92921155 92921180 -8459341 + AT_rich Low_complexity Low_complexity 1 25 0 259 266 73 73 chr15 92921592 92921701 -8458820 - MIR3 SINE MIR -93 115 7 252 291 18 0 chr15 92921954 92922064 -8458457 + L1ME3A LINE L1 6034 6145 -25 1885 223 114 11 chr15 92922653 92923186 -8457335 + MLT1G LTR MaLR 1 588 -2 231 244 0 0 chr15 92924663 92924741 -8455780 + T-rich Low_complexity Low_complexity 1 78 0 24 32 0 0 chr15 92925764 92925795 -8454726 + AT_rich Low_complexity Low_complexity 1 31 0 470 271 21 0 chr15 92925916 92926056 -8454465 + LTR16B LTR ERVL 5 147 -317 194 273 70 47 chr15 92926136 92926235 -8454286 - MIR SINE MIR -70 192 92 396 0 0 0 chr15 92926778 92926822 -8453699 + (CA)n Simple_repeat Simple_repeat 2 45 0 348 116 0 151 chr15 92926939 92927025 -8453496 + MADE1 DNA Mariner 3 75 -5 595 350 122 26 chr15 92927628 92928054 -8452467 - L2 LINE L2 0 3272 2806 441 381 75 20 chr15 92928293 92928736 -8451785 + L1MC/D LINE L1 5299 5765 -2043 531 324 65 91 chr15 92928932 92929651 -8450870 + L2 LINE L2 2570 3271 -1 2036 109 24 7 chr15 92931437 92931731 -8448790 + AluSg SINE Alu 8 306 -4 1981 131 27 10 chr15 92932214 92932546 -8447975 + AluSx SINE Alu 1 337 0 23 0 0 0 chr15 92932777 92932800 -8447721 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr15 92933219 92933240 -8447281 + AT_rich Low_complexity Low_complexity 1 21 0 1958 151 45 31 chr15 92933302 92933660 -8446861 - THE1B LTR MaLR 0 364 2 1382 178 4 8 chr15 92933660 92933913 -8446608 + MLT1C LTR MaLR 215 466 -1 317 281 39 8 chr15 92933930 92933969 -8446552 + MLT1J LTR MaLR 1 37 -474 2011 137 3 23 chr15 92933969 92934269 -8446252 - AluSx SINE Alu -18 294 1 317 281 39 8 chr15 92934269 92934357 -8446164 + MLT1J LTR MaLR 37 132 -379 288 320 19 48 chr15 92934669 92934772 -8445749 - MIR SINE MIR -67 141 42 208 325 129 43 chr15 92934790 92934953 -8445568 + MER5A DNA MER1_type 7 183 -6 639 351 94 34 chr15 92935202 92936056 -8444465 + L2 LINE L2 404 1308 -2006 2013 118 0 0 chr15 92936587 92936858 -8443663 + AluSc SINE Alu 37 307 -2 340 313 43 61 chr15 92936874 92937104 -8443417 - MLT1I LTR MaLR -99 310 85 213 216 157 0 chr15 92938665 92938716 -8441805 + L2 LINE L2 3214 3272 0 546 361 58 33 chr15 92939049 92939442 -8441079 + HAL1b LINE L1 13 415 -933 236 200 43 14 chr15 92939477 92939547 -8440974 + (TA)n Simple_repeat Simple_repeat 2 73 0 333 100 0 0 chr15 92939596 92939646 -8440875 + (CA)n Simple_repeat Simple_repeat 1 50 0 180 111 0 0 chr15 92939646 92939673 -8440848 + (TA)n Simple_repeat Simple_repeat 2 28 0 363 316 172 45 chr15 92939878 92940412 -8440109 + L1MC4a LINE L1 4639 5240 -906 410 306 109 22 chr15 92940480 92940749 -8439772 + L1MC4a LINE L1 5327 5571 -2237 2573 132 39 5 chr15 92940749 92941159 -8439362 - MSTA LTR MaLR -4 424 1 410 306 109 22 chr15 92941159 92941439 -8439082 + L1MC4a LINE L1 5571 5924 -1884 788 170 69 0 chr15 92942617 92942776 -8437745 + MER58B DNA MER1_type 168 337 -4 510 271 52 26 chr15 92942983 92943043 -8437478 + MIR SINE MIR 34 91 -171 3485 133 90 39 chr15 92943043 92943735 -8436786 - LTR8A LTR ERV1 0 727 1 510 271 52 26 chr15 92943735 92943829 -8436692 + MIR SINE MIR 91 192 -70 335 287 26 0 chr15 92945167 92945282 -8435239 + GA-rich Low_complexity Low_complexity 3 120 0 1341 202 24 71 chr15 92945354 92945764 -8434757 - MLT2C1 LTR ERVL -4 393 3 1477 112 14 28 chr15 92945787 92946002 -8434519 - AluSp SINE Alu -19 294 83 201 297 226 19 chr15 92947504 92947659 -8432862 + MIR SINE MIR 7 193 -69 295 216 18 18 chr15 92951880 92951991 -8428530 + (TA)n Simple_repeat Simple_repeat 2 112 0 221 234 6 0 chr15 92952003 92952161 -8428360 + (TA)n Simple_repeat Simple_repeat 1 159 0 285 277 15 0 chr15 92952374 92952438 -8428083 - MLT2F LTR ERVL -574 89 25 908 173 0 6 chr15 92952438 92952594 -8427927 - LTR32 LTR ERVL 0 471 317 1747 190 25 6 chr15 92952651 92952967 -8427554 - LTR32 LTR ERVL -136 335 14 2752 206 78 3 chr15 92953317 92953909 -8426612 + MER73 LTR ERVL 9 644 0 392 270 16 0 chr15 92954684 92954810 -8425711 + (TCTA)n Simple_repeat Simple_repeat 1 128 0 229 250 125 0 chr15 92954859 92954923 -8425598 + MLT1K LTR MaLR 499 570 -18 340 311 22 22 chr15 92954986 92955121 -8425400 - MIR SINE MIR -95 167 33 332 330 11 0 chr15 92955478 92955569 -8424952 - MIR SINE MIR -84 124 33 270 0 0 0 chr15 92956766 92956796 -8423725 + (TG)n Simple_repeat Simple_repeat 2 31 0 410 296 24 0 chr15 92957634 92957803 -8422718 + (CAGAGA)n Simple_repeat Simple_repeat 2 174 0 194 263 50 62 chr15 92958278 92958358 -8422163 - L2 LINE L2 0 3313 3235 274 304 11 22 chr15 92958568 92958660 -8421861 - L2 LINE L2 0 3272 3182 287 307 20 20 chr15 92959714 92959815 -8420706 - MIR SINE MIR -115 147 47 227 284 15 0 chr15 92959860 92959927 -8420594 - MER96 DNA MER1_type? -1 174 107 725 315 14 10 chr15 92959943 92960183 -8420338 + MIR SINE MIR 4 241 -21 28 0 0 0 chr15 92960191 92960219 -8420302 + AT_rich Low_complexity Low_complexity 1 28 0 231 318 0 0 chr15 92960394 92960482 -8420039 - MIR SINE MIR -14 248 161 444 314 97 31 chr15 92963142 92963368 -8417153 + MIR SINE MIR 9 249 -13 213 125 54 18 chr15 92963392 92963448 -8417073 + CT-rich Low_complexity Low_complexity 6 63 0 255 307 136 0 chr15 92963915 92964003 -8416518 - L2 LINE L2 -1 3271 3172 1015 277 121 13 chr15 92964050 92964097 -8416424 + MLT1G1 LTR MaLR 125 166 -429 1899 175 59 74 chr15 92964097 92964571 -8415950 - MLT1C LTR MaLR 0 467 1 1015 277 121 13 chr15 92964571 92964913 -8415608 + MLT1G1 LTR MaLR 166 556 -39 225 132 0 0 chr15 92965438 92965476 -8415045 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 302 236 108 70 chr15 92965831 92965988 -8414533 - L2 LINE L2 -1 3312 3150 698 293 11 0 chr15 92966214 92966395 -8414126 + MIR SINE MIR 23 205 -57 21 36 0 0 chr15 92966947 92966975 -8413546 + AT_rich Low_complexity Low_complexity 1 28 0 676 288 121 49 chr15 92967400 92967789 -8412732 - L2 LINE L2 -2 3311 2895 691 104 0 0 chr15 92968433 92968529 -8411992 - AluSg/x SINE Alu 0 310 215 446 267 9 9 chr15 92969256 92969372 -8411149 + MER5A DNA MER1_type 74 189 0 376 211 53 42 chr15 92969433 92969528 -8410993 + MER5A DNA MER1_type 9 104 -85 193 289 0 0 chr15 92969531 92969583 -8410938 - MIR SINE MIR -54 208 157 23 0 0 0 chr15 92969608 92969631 -8410890 + AT_rich Low_complexity Low_complexity 1 23 0 1332 287 62 35 chr15 92969930 92970494 -8410027 + MLT1E LTR MaLR 1 579 -14 302 206 41 0 chr15 92970596 92970669 -8409852 + MLT1F1 LTR MaLR 492 567 0 604 296 56 60 chr15 92970769 92971215 -8409306 + MLT1J2 LTR MaLR 7 450 0 22 70 0 0 chr15 92971241 92971284 -8409237 + AT_rich Low_complexity Low_complexity 1 43 0 761 145 36 141 chr15 92973458 92973507 -8407014 - MER96B DNA MER1_type? -182 235 182 1760 231 6 8 chr15 92973507 92973871 -8406650 + MLT1A1 LTR MaLR 1 363 -2 761 145 36 141 chr15 92973871 92973942 -8406579 - MER96B DNA MER1_type? -235 182 105 2101 93 0 0 chr15 92973942 92974201 -8406320 + AluSc SINE Alu 24 282 -27 761 145 36 141 chr15 92974201 92974327 -8406194 - MER96B DNA MER1_type? -312 105 14 223 211 0 19 chr15 92976505 92976557 -8403964 - L2 LINE L2 0 3313 3263 2087 210 124 4 chr15 92976659 92977149 -8403372 + MER44D DNA MER2_type 2 605 0 189 278 186 0 chr15 92977490 92977587 -8402934 + L2 LINE L2 3155 3269 -3 1543 143 0 25 chr15 92977720 92977964 -8402557 - AluSg/x SINE Alu -7 305 68 21 57 0 0 chr15 92982095 92982130 -8398391 + AT_rich Low_complexity Low_complexity 1 35 0 357 263 30 23 chr15 92982390 92982523 -8397998 + MER103 DNA DNA 10 143 -23 309 346 44 0 chr15 92983340 92983499 -8397022 + MIR3 SINE MIR 39 204 -4 195 42 0 0 chr15 92984269 92984293 -8396228 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2275 209 17 74 chr15 92985935 92986475 -8394046 - MLT2B1 LTR ERVL -10 510 2 347 335 145 13 chr15 92986768 92986995 -8393526 + MIR SINE MIR 5 261 -1 607 294 123 0 chr15 92987331 92987535 -8392986 + MIR SINE MIR 18 246 -16 28 86 0 0 chr15 92987547 92987617 -8392904 + AT_rich Low_complexity Low_complexity 1 70 0 1043 166 21 11 chr15 92988006 92988193 -8392328 + MER5A DNA MER1_type 1 189 0 260 204 11 91 chr15 92989483 92989571 -8390950 - L2 LINE L2 -211 3061 2981 255 235 139 35 chr15 92989801 92989916 -8390605 + MER117 DNA MER1_type 36 162 -35 2170 102 7 0 chr15 92990434 92990719 -8389802 - AluSx SINE Alu -25 287 1 2016 150 64 0 chr15 92990772 92991099 -8389422 + MER7A DNA MER2_type 1 346 0 618 291 141 21 chr15 92993650 92993983 -8386538 - MLT1J LTR MaLR -41 470 98 1105 248 70 114 chr15 92994100 92994704 -8385817 - MLT1G LTR MaLR 0 590 14 185 345 46 0 chr15 92994709 92994796 -8385725 - MIR SINE MIR -157 105 15 21 0 0 0 chr15 92995103 92995124 -8385397 + AT_rich Low_complexity Low_complexity 1 21 0 41 36 0 0 chr15 92996108 92996163 -8384358 + AT_rich Low_complexity Low_complexity 1 55 0 2314 110 0 0 chr15 92996224 92996532 -8383989 - AluSx SINE Alu -4 308 1 2052 120 0 3 chr15 92997180 92997492 -8383029 - AluSg SINE Alu 0 311 1 285 330 0 21 chr15 92998301 92998395 -8382126 + L2 LINE L2 2677 2768 -546 1907 138 0 11 chr15 92998616 92998899 -8381622 - AluSq SINE Alu -33 280 1 235 152 38 38 chr15 92999238 92999317 -8381204 + (TTATA)n Simple_repeat Simple_repeat 1 79 0 1549 323 128 46 chr15 93000584 93002683 -8377838 - L2 LINE L2 -67 3246 984 804 203 29 30 chr15 93002686 93002921 -8377600 + L1MC/D LINE L1 5445 5717 -525 332 188 0 0 chr15 93002921 93002985 -8377536 + L1MA10 LINE L1 6257 6320 -14 641 365 58 16 chr15 93003018 93003503 -8377018 - L2 LINE L2 -2330 984 480 293 181 85 85 chr15 93004277 93004371 -8376150 + L2 LINE L2 3220 3313 0 25 0 0 0 chr15 93006105 93006130 -8374391 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr15 93006707 93006729 -8373792 + AT_rich Low_complexity Low_complexity 1 22 0 267 260 79 0 chr15 93008263 93008353 -8372168 - L1MA8 LINE L1 -12 6279 6197 254 288 79 79 chr15 93009453 93009668 -8370853 + L2 LINE L2 2971 3185 -87 342 0 0 0 chr15 93009851 93009889 -8370632 + (CA)n Simple_repeat Simple_repeat 2 39 0 471 298 106 0 chr15 93012379 93012530 -8367991 + MIR3 SINE MIR 42 208 0 1684 106 124 15 chr15 93013511 93013784 -8366737 + AluSg SINE Alu 1 303 -7 670 318 54 0 chr15 93013970 93014193 -8366328 + MIR SINE MIR 28 262 0 1894 142 0 7 chr15 93014249 93014555 -8365966 + AluSx SINE Alu 3 306 0 267 328 35 23 chr15 93015038 93015209 -8365312 + L1P LINE L1 3485 3657 -2489 403 346 59 33 chr15 93015282 93015554 -8364967 + L1M4 LINE L1 3798 4076 -2070 34 24 0 0 chr15 93015588 93015629 -8364892 + AT_rich Low_complexity Low_complexity 1 41 0 1902 136 17 86 chr15 93015825 93016186 -8364335 - MER1B DNA MER1_type 0 337 2 21 0 0 0 chr15 93016408 93016429 -8364092 + AT_rich Low_complexity Low_complexity 1 21 0 1555 206 107 35 chr15 93016583 93017138 -8363383 + L1MB8 LINE L1 5569 6178 0 282 331 15 15 chr15 93017662 93017792 -8362729 + MIR SINE MIR 19 148 -114 382 290 114 5 chr15 93018092 93018285 -8362236 + L1ME LINE L1 5558 5771 -350 589 274 80 87 chr15 93018339 93018751 -8361770 + L2 LINE L2 2344 2752 -562 424 251 45 78 chr15 93019030 93019209 -8361312 + L1MEd LINE L1 978 1150 -4969 224 180 79 34 chr15 93019358 93019447 -8361074 + (GGGTG)n Simple_repeat Simple_repeat 4 96 0 202 243 75 65 chr15 93019619 93019726 -8360795 - L2 LINE L2 -189 3083 2976 194 263 50 62 chr15 93019934 93020014 -8360507 - L2 LINE L2 0 3313 3235 274 304 11 22 chr15 93020224 93020316 -8360205 - L2 LINE L2 0 3272 3182 314 284 20 10 chr15 93020733 93020835 -8359686 + L2 LINE L2 3155 3257 -15 194 279 7 0 chr15 93020894 93021030 -8359491 + (TGG)n Simple_repeat Simple_repeat 2 138 0 450 219 0 0 chr15 93021045 93021196 -8359325 + (TGG)n Simple_repeat Simple_repeat 2 152 0 342 176 0 0 chr15 93021217 93021302 -8359219 + (TGG)n Simple_repeat Simple_repeat 3 87 0 230 259 16 27 chr15 93021841 93022101 -8358420 + C-rich Low_complexity Low_complexity 1 257 0 630 176 24 114 chr15 93022345 93022555 -8357966 - MER1B DNA MER1_type -105 192 2 21 0 0 0 chr15 93022777 93022798 -8357723 + AT_rich Low_complexity Low_complexity 1 21 0 1555 206 107 35 chr15 93022952 93023507 -8357014 + L1MB8 LINE L1 5569 6178 0 399 21 0 0 chr15 93024035 93024083 -8356438 + (TG)n Simple_repeat Simple_repeat 2 49 0 250 391 11 0 chr15 93026133 93026225 -8354296 - L2 LINE L2 -47 3225 3133 25 0 0 0 chr15 93026981 93027006 -8353515 + AT_rich Low_complexity Low_complexity 1 25 0 255 266 73 73 chr15 93027313 93027422 -8353099 - MIR3 SINE MIR -93 115 7 291 291 18 0 chr15 93027675 93027785 -8352736 + L1ME3A LINE L1 6034 6145 -25 325 222 15 15 chr15 93028341 93028476 -8352045 + C-rich Low_complexity Low_complexity 6 140 0 188 114 29 43 chr15 93028491 93028561 -8351960 + C-rich Low_complexity Low_complexity 6 74 0 290 139 39 62 chr15 93028563 93028692 -8351829 + (CCCA)n Simple_repeat Simple_repeat 3 128 0 797 325 86 42 chr15 93029207 93030208 -8350313 + L1M4 LINE L1 3419 4463 -1683 599 78 11 0 chr15 93030237 93030327 -8350194 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 394 271 132 36 chr15 93030327 93030608 -8349913 + L1M4 LINE L1 4514 4821 -1325 850 270 74 41 chr15 93031419 93031839 -8348682 + MLT1C LTR MaLR 9 458 -9 331 240 105 109 chr15 93032265 93032494 -8348027 + L2 LINE L2 2222 2449 -865 324 0 0 0 chr15 93032531 93032567 -8347954 + (TG)n Simple_repeat Simple_repeat 1 36 0 2251 77 14 0 chr15 93032567 93032845 -8347676 - AluSq SINE Alu -28 285 1 498 46 0 0 chr15 93033025 93033090 -8347431 + (CTATT)n Simple_repeat Simple_repeat 1 65 0 287 212 35 24 chr15 93033090 93033175 -8347346 + MER112 DNA MER1_type 165 250 -10 2319 95 3 3 chr15 93033584 93033888 -8346633 + AluSc SINE Alu 1 304 -5 1053 224 127 62 chr15 93034302 93034541 -8345980 - Charlie2a DNA MER1_type -3 2859 2637 1825 122 89 0 chr15 93034541 93034812 -8345709 - AluSg SINE Alu -15 295 1 1053 224 127 62 chr15 93034812 93035551 -8344970 - Charlie2a DNA MER1_type -225 2637 683 5710 54 3 16 chr15 93035554 93036300 -8344221 + LTR17 LTR ERV1 1 780 0 242 162 29 59 chr15 93036305 93036373 -8344148 - Charlie2a DNA MER1_type -2184 678 613 420 310 145 51 chr15 93036545 93036639 -8343882 - Charlie2a DNA MER1_type -2394 388 304 791 129 15 15 chr15 93036639 93036771 -8343750 + FLAM_C SINE Alu 2 133 0 420 310 145 51 chr15 93036771 93037008 -8343513 - Charlie2a DNA MER1_type -2478 304 26 238 331 41 25 chr15 93037731 93037852 -8342669 - MIR SINE MIR -62 146 24 328 330 6 23 chr15 93039648 93039821 -8340700 + CT-rich Low_complexity Low_complexity 5 174 0 220 321 9 18 chr15 93039926 93040038 -8340483 + G-rich Low_complexity Low_complexity 1 111 0 2032 174 24 0 chr15 93040382 93040722 -8339799 - MER6 DNA MER2_type -517 348 1 5227 152 62 12 chr15 93040722 93041672 -8338849 + Tigger3b DNA MER2_type 234 1231 0 231 188 0 0 chr15 93042195 93042243 -8338278 + (TTA)n Simple_repeat Simple_repeat 2 49 0 447 176 51 0 chr15 93042446 93042601 -8337920 - L1ME4a LINE L1 -196 5925 5757 491 302 87 42 chr15 93042627 93042915 -8337606 - Tigger8 DNA MER2_type -355 311 11 29 70 0 0 chr15 93043151 93043208 -8337313 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr15 93043279 93043300 -8337221 + AT_rich Low_complexity Low_complexity 1 21 0 361 44 0 0 chr15 93043300 93043345 -8337176 - L1PA3 LINE L1 -3 6152 6108 25 31 0 0 chr15 93043460 93043492 -8337029 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr15 93043633 93043661 -8336860 + AT_rich Low_complexity Low_complexity 1 28 0 180 313 0 71 chr15 93044802 93044901 -8335620 - L2 LINE L2 -337 2977 2886 261 0 0 0 chr15 93045273 93045302 -8335219 + (T)n Simple_repeat Simple_repeat 1 29 0 291 338 62 28 chr15 93045532 93045677 -8334844 - MIR3 SINE MIR -50 158 9 336 306 104 0 chr15 93046103 93046237 -8334284 + L2 LINE L2 3161 3308 -5 2044 128 3 7 chr15 93046373 93046670 -8333851 - AluSg SINE Alu -12 298 3 2363 67 3 3 chr15 93047031 93047329 -8333192 - AluY SINE Alu -13 298 1 2163 120 10 0 chr15 93047329 93047638 -8332883 - AluSx SINE Alu 0 312 1 591 236 7 10 chr15 93051710 93052011 -8328510 + (CCA)n Simple_repeat Simple_repeat 1 299 0 314 284 20 10 chr15 93052012 93052114 -8328407 - L2 LINE L2 -15 3257 3155 189 0 0 0 chr15 93052590 93052611 -8327910 + (GA)n Simple_repeat Simple_repeat 2 22 0 288 296 170 7 chr15 93052861 93052996 -8327525 - MIR3 SINE MIR -36 172 16 2129 121 0 31 chr15 93053292 93053614 -8326907 + AluSx SINE Alu 1 312 0 21 0 0 0 chr15 93055840 93055861 -8324660 + AT_rich Low_complexity Low_complexity 1 21 0 238 233 0 27 chr15 93056060 93056133 -8324388 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 1309 108 0 3 chr15 93057682 93057923 -8322598 + AluY SINE Alu 2 304 -7 324 320 52 29 chr15 93059772 93059944 -8320577 - MIR SINE MIR -3 259 84 310 316 129 29 chr15 93060175 93060384 -8320137 + MIR SINE MIR 33 262 0 214 304 0 43 chr15 93061512 93061604 -8318917 + L2 LINE L2 3159 3246 -67 300 303 99 28 chr15 93061982 93062124 -8318397 - L2 LINE L2 0 3272 3121 649 293 126 46 chr15 93062143 93062661 -8317860 - L2 LINE L2 -416 2898 2340 876 167 149 6 chr15 93062696 93062864 -8317657 + AluJo SINE Alu 1 192 -120 290 188 21 52 chr15 93062961 93063057 -8317464 + L1ME4a LINE L1 6026 6118 -3 245 146 36 18 chr15 93064222 93064277 -8316244 + CT-rich Low_complexity Low_complexity 4 59 0 265 230 0 81 chr15 93065476 93065550 -8314971 + L2 LINE L2 3246 3313 0 212 355 50 33 chr15 93065762 93065883 -8314638 - L2 LINE L2 -10 3262 3140 291 339 35 40 chr15 93066218 93066445 -8314076 - L2 LINE L2 -484 2830 2605 2343 112 0 0 chr15 93066996 93067309 -8313212 + AluSq SINE Alu 1 313 0 467 271 32 53 chr15 93067683 93067871 -8312650 - MIR SINE MIR -45 217 34 846 238 50 20 chr15 93068399 93068601 -8311920 - MER58A DNA MER1_type -10 214 7 264 361 0 100 chr15 93068692 93068872 -8311649 - L2 LINE L2 -99 3173 3012 302 294 59 13 chr15 93068877 93069030 -8311491 - MER117 DNA MER1_type -35 162 3 1564 165 53 7 chr15 93069369 93069654 -8310867 + AluJb SINE Alu 2 299 -13 2386 80 0 13 chr15 93069654 93069966 -8310555 + AluY SINE Alu 1 308 -3 200 83 0 28 chr15 93069983 93070019 -8310502 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1759 163 33 3 chr15 93071242 93071542 -8308979 - AluSx SINE Alu -3 309 1 358 328 53 16 chr15 93071811 93072000 -8308521 + MIR SINE MIR 63 258 -4 207 0 0 0 chr15 93072510 93072533 -8307988 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 2199 116 3 0 chr15 93072978 93073279 -8307242 - AluSq SINE Alu -11 302 1 1973 103 94 53 chr15 93073759 93074119 -8306402 + THE1C LTR MaLR 1 375 0 2254 103 0 3 chr15 93074387 93074687 -8305834 - AluSq SINE Alu -14 299 1 422 145 16 0 chr15 93075003 93075065 -8305456 + AluSc SINE Alu 181 243 -66 444 334 50 34 chr15 93075466 93075786 -8304735 + MLT1I LTR MaLR 85 409 0 199 320 13 27 chr15 93075809 93075884 -8304637 + MIR SINE MIR 29 102 -106 2491 123 47 5 chr15 93076662 93077044 -8303477 + MSTA LTR MaLR 31 428 0 262 283 0 0 chr15 93077610 93077670 -8302851 - L2 LINE L2 -5 3308 3249 410 276 70 32 chr15 93077904 93078089 -8302432 - L2 LINE L2 0 3313 3122 286 280 126 49 chr15 93078207 93078350 -8302171 - L2 LINE L2 0 3313 3160 307 346 105 13 chr15 93079954 93080182 -8300339 + MIR SINE MIR 14 262 0 21 43 0 22 chr15 93080706 93080717 -8299804 + AT_rich Low_complexity Low_complexity 1 11 -34 2250 93 14 3 chr15 93080717 93081008 -8299513 + AluSp SINE Alu 1 294 -19 21 43 0 22 chr15 93081008 93081042 -8299479 + AT_rich Low_complexity Low_complexity 11 45 0 209 267 0 11 chr15 93081084 93081174 -8299347 + (TA)n Simple_repeat Simple_repeat 1 89 0 201 290 14 29 chr15 93082116 93082185 -8298336 + L2 LINE L2 3233 3300 -13 23 33 0 0 chr15 93082750 93082780 -8297741 + AT_rich Low_complexity Low_complexity 1 30 0 313 238 172 25 chr15 93084304 93084426 -8296095 + MIR3 SINE MIR 9 148 -60 254 277 9 54 chr15 93087012 93087124 -8293397 + L2 LINE L2 3207 3313 0 525 189 28 9 chr15 93089466 93089572 -8290949 + MIR SINE MIR 155 262 0 681 315 25 25 chr15 93089757 93089890 -8290631 - MIR SINE MIR -7 255 120 2341 127 127 16 chr15 93089890 93090275 -8290246 + MSTA LTR MaLR 1 428 0 681 315 25 25 chr15 93090275 93090382 -8290139 - MIR SINE MIR -141 121 15 1836 182 19 38 chr15 93090819 93091187 -8289334 + MLT1A1 LTR MaLR 5 365 0 322 299 192 18 chr15 93092025 93092192 -8288329 - MIR3 SINE MIR -11 197 2 2111 125 0 0 chr15 93092201 93092522 -8287999 - AluSg SINE Alu 0 310 1 216 353 64 45 chr15 93094268 93094358 -8286163 - MIR SINE MIR -78 184 88 1755 132 16 0 chr15 93094358 93094615 -8285906 + AluSx SINE Alu 35 295 -17 216 353 64 45 chr15 93094615 93094680 -8285841 - MIR SINE MIR -174 88 26 1826 153 24 0 chr15 93094890 93095184 -8285337 - AluJo SINE Alu -3 309 9 366 355 0 7 chr15 93095237 93095389 -8285132 + MIR SINE MIR 8 158 -104 1589 144 27 1 chr15 93095389 93095829 -8284692 + LTR54 LTR ERV1 1 510 0 348 310 50 0 chr15 93095829 93095929 -8284592 + MIR SINE MIR 155 259 -3 691 328 54 40 chr15 93096028 93096379 -8284142 + L3 LINE CR1 863 1218 -359 285 385 48 35 chr15 93096383 93096614 -8283907 + L3 LINE CR1 1343 1576 -1 1762 118 0 8 chr15 93096631 93096904 -8283617 + AluSx SINE Alu 42 312 0 398 318 36 49 chr15 93098784 93099007 -8281514 + MIR SINE MIR 36 255 -7 971 291 101 24 chr15 93099513 93100012 -8280509 - L2 LINE L2 0 3313 2783 857 243 11 11 chr15 93100406 93100595 -8279926 - MER5A DNA MER1_type 0 189 1 436 327 55 14 chr15 93100614 93100834 -8279687 + MIR SINE MIR 13 241 -21 439 352 75 0 chr15 93101383 93101582 -8278939 - MIR SINE MIR -29 233 20 376 193 14 138 chr15 93101817 93101962 -8278559 + L2 LINE L2 3187 3313 0 248 319 21 0 chr15 93103409 93103503 -8277018 + MIR SINE MIR 124 219 -43 219 333 49 29 chr15 93103619 93103721 -8276800 - MER91C DNA MER1_type 0 140 37 282 300 100 0 chr15 93104476 93104556 -8275965 - L2 LINE L2 0 3272 3185 2750 215 88 30 chr15 93105346 93105836 -8274685 - L1ME1 LINE L1 -61 6105 5549 2299 101 3 3 chr15 93105836 93106142 -8274379 - AluSp SINE Alu -7 306 1 2750 215 88 30 chr15 93106142 93106494 -8274027 - L1ME1 LINE L1 -617 5549 5219 357 283 47 9 chr15 93106611 93106717 -8273804 + L2 LINE L2 3202 3311 -2 1284 221 62 39 chr15 93107189 93107546 -8272975 + MLT1A2 LTR MaLR 10 374 0 211 273 116 52 chr15 93107630 93107802 -8272719 + MIR SINE MIR 46 228 -34 347 323 32 0 chr15 93108116 93108240 -8272281 - MIR SINE MIR -66 196 69 314 367 100 36 chr15 93109394 93109923 -8270598 - MLT1K LTR MaLR -21 567 5 2141 107 0 28 chr15 93110109 93110426 -8270095 + AluY SINE Alu 3 310 -1 271 371 43 14 chr15 93110673 93110813 -8269708 + MIR3 SINE MIR 42 185 -23 234 391 0 0 chr15 93111005 93111097 -8269424 + MIR SINE MIR 48 139 -69 201 39 0 0 chr15 93111834 93111860 -8268661 + (CA)n Simple_repeat Simple_repeat 2 27 0 285 316 61 0 chr15 93113492 93113606 -8266915 + MLT1J1 LTR MaLR 47 167 -279 1823 156 14 0 chr15 93113709 93113997 -8266524 - AluJo SINE Alu -15 297 6 417 260 147 34 chr15 93114225 93114429 -8266092 + MLT1J2 LTR MaLR 171 397 -53 2313 93 7 10 chr15 93114749 93115050 -8265471 + AluSx SINE Alu 1 300 -12 1681 60 56 9 chr15 93116969 93117185 -8263336 + AluYa5 SINE Alu 1 226 -85 303 323 8 31 chr15 93117210 93117337 -8263184 + L2 LINE L2 3156 3279 -34 1057 128 20 0 chr15 93117760 93117909 -8262612 - L1PA10 LINE L1 -2 6166 6015 316 264 33 0 chr15 93117921 93118012 -8262509 + MIR SINE MIR 73 166 -96 260 174 0 0 chr15 93118127 93118173 -8262348 - L1MC4 LINE L1 -1339 6703 6658 317 234 13 0 chr15 93119010 93119087 -8261434 + MER103 DNA DNA 12 89 -77 516 258 79 60 chr15 93120142 93120394 -8260127 + MIR SINE MIR 4 260 -2 616 35 35 0 chr15 93121402 93121488 -8259033 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 312 137 0 0 chr15 93121505 93121556 -8258965 + (TCCG)n Simple_repeat Simple_repeat 3 53 0 2121 140 7 0 chr15 93122774 93123074 -8257447 + AluSg SINE Alu 1 302 -8 345 316 15 45 chr15 93123858 93123991 -8256530 - MIR SINE MIR -87 175 47 293 280 126 35 chr15 93124189 93124332 -8256189 - MIR SINE MIR -70 192 37 1835 98 4 0 chr15 93124647 93124893 -8255628 - AluY SINE Alu -64 247 1 21 57 0 0 chr15 93124924 93124959 -8255562 + AT_rich Low_complexity Low_complexity 1 35 0 677 287 55 14 chr15 93125118 93125393 -8255128 - L1MC4a LINE L1 -1947 5861 5576 258 284 48 74 chr15 93125394 93125665 -8254856 - L1MC4a LINE L1 -2290 5518 5255 255 343 94 15 chr15 93125763 93125919 -8254602 - MIR SINE MIR -37 171 2 313 342 128 8 chr15 93126173 93126416 -8254105 + L2 LINE L2 3001 3272 0 664 157 0 1 chr15 93126479 93126594 -8253927 - LTR12 LTR ERV1 0 714 480 263 233 14 0 chr15 93126594 93126667 -8253854 - LTR30 LTR ERV1 -80 642 569 1413 109 106 47 chr15 93126671 93126927 -8253594 - LTR12 LTR ERV1 -443 271 1 1877 131 13 26 chr15 93126981 93127287 -8253234 - AluSg SINE Alu -8 302 1 238 247 212 12 chr15 93127406 93127491 -8253030 + MIR SINE MIR 20 121 -87 23 54 0 0 chr15 93127664 93127701 -8252820 + AT_rich Low_complexity Low_complexity 1 37 0 30 45 0 0 chr15 93127721 93127765 -8252756 + AT_rich Low_complexity Low_complexity 1 44 0 240 368 7 15 chr15 93127825 93127961 -8252560 + MER5A DNA MER1_type 55 189 0 782 153 7 0 chr15 93129303 93129447 -8251074 + GA-rich Low_complexity Low_complexity 4 148 0 231 36 0 0 chr15 93131079 93131107 -8249414 + (CA)n Simple_repeat Simple_repeat 1 28 0 213 291 97 10 chr15 93131109 93131212 -8249309 - MIR SINE MIR -101 161 50 1814 164 13 82 chr15 93133223 93133454 -8247067 - MLT1A1 LTR MaLR -3 362 167 2224 126 0 0 chr15 93133454 93133755 -8246766 - AluSx SINE Alu -11 301 1 1814 164 13 82 chr15 93133755 93133912 -8246609 - MLT1A1 LTR MaLR -198 167 1 2936 82 92 5 chr15 93135184 93135596 -8244925 + LTR7 LTR ERV1 1 448 -2 20666 100 9 18 chr15 93135598 93138610 -8241911 + HERVH LTR ERV1 1 2987 -4726 914 142 20 0 chr15 93138604 93138752 -8241769 + HERVH LTR ERV1 3140 3290 -4423 * 3572 86 6 6 chr15 93138742 93139244 -8241277 + HERVH LTR ERV1 3492 3993 -3720 4549 133 3 1 chr15 93139246 93139907 -8240614 + HERVH LTR ERV1 4488 5149 -2564 1410 94 42 9 chr15 93139908 93140121 -8240400 + HERVH LTR ERV1 5600 5819 -1894 * 2343 101 56 13 chr15 93140119 93140495 -8240026 + HERVH LTR ERV1 7322 7713 0 2708 89 111 5 chr15 93140495 93140900 -8239621 + LTR7 LTR ERV1 1 448 -2 9655 86 7 32 chr15 93140901 93142325 -8238196 + HERVH LTR ERV1 1608 2995 -4718 5904 103 6 2 chr15 93142304 93143155 -8237366 + HERVH LTR ERV1 3140 3993 -3720 * 4243 149 9 1 chr15 93143157 93143814 -8236707 + HERVH LTR ERV1 4488 5149 -2564 1430 130 19 0 chr15 93143815 93144031 -8236490 + HERVH LTR ERV1 5600 5819 -1894 2219 114 70 14 chr15 93144031 93144400 -8236121 + HERVH LTR ERV1 7324 7713 0 2888 82 97 10 chr15 93144400 93144812 -8235709 + LTR7 LTR ERV1 1 448 -2 350 341 71 16 chr15 93145700 93145882 -8234639 + MIR3 SINE MIR 8 199 -9 324 231 83 77 chr15 93146348 93146517 -8234004 - MIR SINE MIR -21 241 72 301 188 134 89 chr15 93146540 93146652 -8233869 - L2 LINE L2 0 3313 3197 530 219 123 32 chr15 93146724 93146911 -8233610 + MER63A DNA MER1_type 1 204 -6 349 294 152 16 chr15 93146995 93147179 -8233342 - MIR SINE MIR -1 261 53 859 95 0 0 chr15 93147546 93147651 -8232870 + L1PA7 LINE L1 6039 6143 -11 201 174 0 22 chr15 93148208 93148254 -8232267 + T-rich Low_complexity Low_complexity 2 46 0 221 289 0 106 chr15 93148527 93148631 -8231890 - MIR SINE MIR -53 209 117 2740 106 17 0 chr15 93148655 93149013 -8231508 + THE1B LTR MaLR 1 364 0 428 308 175 0 chr15 93150287 93150498 -8230023 - MIR SINE MIR -1 261 14 1867 145 35 0 chr15 93150506 93150788 -8229733 - AluSx SINE Alu -18 294 3 437 299 74 96 chr15 93151050 93151566 -8228955 - L2 LINE L2 -57 3215 2713 1846 155 7 26 chr15 93151634 93151938 -8228583 + AluSx SINE Alu 1 298 -14 213 39 0 0 chr15 93151945 93151971 -8228550 + (GGGGA)n Simple_repeat Simple_repeat 5 30 0 * 1246 62 11 6 chr15 93151970 93152147 -8228374 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 203 322 52 17 chr15 93152180 93152295 -8228226 - L2 LINE L2 -1159 2155 2037 297 185 0 0 chr15 93155302 93155367 -8225154 + (CA)n Simple_repeat Simple_repeat 2 66 0 220 338 131 31 chr15 93155466 93155626 -8224895 + MIR SINE MIR 25 200 -62 1723 163 25 94 chr15 93155679 93156083 -8224438 - MLT1B LTR MaLR -14 376 1 3210 162 29 5 chr15 93156909 93157500 -8223021 + MER6A DNA MER2_type 1 605 0 222 220 0 0 chr15 93158216 93158275 -8222246 + (TG)n Simple_repeat Simple_repeat 2 60 0 220 327 151 31 chr15 93162971 93163130 -8217391 - L2 LINE L2 -171 3142 2965 373 248 26 60 chr15 93163205 93163322 -8217199 + L2 LINE L2 3200 3312 -1 352 321 91 36 chr15 93163312 93163477 -8217044 - L2 LINE L2 -445 2869 2696 * 808 246 63 102 chr15 93163516 93163926 -8216595 + LTR16A1 LTR ERVL 62 455 -2 21 0 0 0 chr15 93164143 93164164 -8216357 + AT_rich Low_complexity Low_complexity 1 21 0 2358 94 0 0 chr15 93164371 93164668 -8215853 - AluSg SINE Alu -13 297 1 349 300 61 56 chr15 93166300 93166645 -8213876 + L1ME3A LINE L1 905 1271 -4881 3299 267 89 30 chr15 93166844 93167232 -8213289 + L1ME3A LINE L1 3030 3394 -2735 252 0 0 0 chr15 93167232 93167260 -8213261 + (TA)n Simple_repeat Simple_repeat 1 28 0 3299 267 89 30 chr15 93167260 93168869 -8211652 + L1ME3A LINE L1 3394 5145 -984 1507 279 81 7 chr15 93168872 93169577 -8210944 + L1ME3A LINE L1 5334 6124 -23 253 42 21 42 chr15 93171028 93171076 -8209445 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 406 318 72 42 chr15 93171460 93171864 -8208657 + L2 LINE L2 2835 3253 -19 22 0 0 0 chr15 93171875 93171897 -8208624 + AT_rich Low_complexity Low_complexity 1 22 0 640 147 37 6 chr15 93172588 93172751 -8207770 + CT-rich Low_complexity Low_complexity 3 170 0 387 41 0 0 chr15 93172872 93172921 -8207600 + (CA)n Simple_repeat Simple_repeat 2 50 0 2397 164 24 5 chr15 93172964 93173384 -8207137 - MSTA LTR MaLR 0 428 1 571 305 40 26 chr15 93173540 93173766 -8206755 + MIR SINE MIR 34 262 0 364 318 114 45 chr15 93173886 93174131 -8206390 + MIR SINE MIR 1 262 0 193 322 68 45 chr15 93174889 93175066 -8205455 - L2 LINE L2 -527 2787 2607 284 288 72 8 chr15 93178940 93179065 -8201456 + L1MC4 LINE L1 6853 6985 -1057 319 221 16 147 chr15 93179656 93179914 -8200607 - L1ME3A LINE L1 -220 5933 5710 213 121 0 0 chr15 93179943 93179976 -8200545 + (TA)n Simple_repeat Simple_repeat 2 34 0 236 140 0 0 chr15 93180058 93180108 -8200413 - LTR66 LTR ERVL -167 443 394 201 195 0 0 chr15 93180115 93180156 -8200365 + (TATG)n Simple_repeat Simple_repeat 4 44 0 338 267 47 0 chr15 93180160 93180246 -8200275 + L1MC4 LINE L1 6614 6703 -1339 432 181 0 0 chr15 93180249 93180332 -8200189 + (TATATG)n Simple_repeat Simple_repeat 6 88 0 585 276 68 44 chr15 93180335 93180675 -8199846 - L1ME3A LINE L1 -471 5674 5327 261 0 0 0 chr15 93180724 93180753 -8199768 + (TG)n Simple_repeat Simple_repeat 2 30 0 355 343 41 0 chr15 93180759 93180905 -8199616 - L1ME3A LINE L1 -937 5192 5041 785 149 0 30 chr15 93180917 93181051 -8199470 + AluJb SINE Alu 4 133 -179 3994 213 47 13 chr15 93181240 93182424 -8198097 + L1MB7 LINE L1 4930 6165 -19 659 299 98 34 chr15 93182583 93183178 -8197343 - L1ME3A LINE L1 -1499 4630 3998 636 277 105 4 chr15 93183396 93183634 -8196887 + MIR SINE MIR 1 262 0 2254 117 0 0 chr15 93183722 93184029 -8196492 + AluSx SINE Alu 1 307 -5 262 217 104 17 chr15 93184110 93184225 -8196296 - L1ME3A LINE L1 -2687 3442 3318 295 360 0 12 chr15 93184262 93184426 -8196095 - L1ME3A LINE L1 -3376 2753 2592 298 288 121 5 chr15 93184610 93184640 -8195881 - L1ME3A LINE L1 -3794 2335 2310 2107 104 45 0 chr15 93184640 93184928 -8195593 - AluSx SINE Alu -11 301 1 298 288 121 5 chr15 93184928 93185112 -8195409 - L1ME3A LINE L1 -3819 2310 2096 438 286 59 27 chr15 93185575 93186024 -8194497 - L1MEd LINE L1 -4850 1460 958 399 270 43 84 chr15 93186042 93186460 -8194061 - L1MEd LINE L1 -5119 1000 600 234 105 0 0 chr15 93186465 93186503 -8194018 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 25 31 0 0 chr15 93186714 93186746 -8193775 + AT_rich Low_complexity Low_complexity 1 32 0 1901 181 129 5 chr15 93187002 93187412 -8193109 - LOR1b LTR ERV1 0 461 1 23 0 0 0 chr15 93187447 93187470 -8193051 + AT_rich Low_complexity Low_complexity 1 23 0 2198 136 0 3 chr15 93187619 93187927 -8192594 - AluSg SINE Alu -3 307 1 2029 167 77 15 chr15 93189154 93189555 -8190966 - MSTB LTR MaLR 0 426 1 229 274 155 0 chr15 93190218 93190302 -8190219 - MIR SINE MIR -113 149 53 920 166 31 135 chr15 93190695 93190831 -8189690 + L1MC3 LINE L1 6813 6899 -886 1966 139 0 4 chr15 93190831 93191112 -8189409 + AluSq SINE Alu 6 285 -28 920 166 31 135 chr15 93191112 93191294 -8189227 + L1MC3 LINE L1 6899 7098 -687 240 281 18 61 chr15 93191297 93191411 -8189110 + MLT1F1 LTR MaLR 39 147 -420 1780 163 94 131 chr15 93191411 93191502 -8189019 + L1MC3 LINE L1 7213 7306 -479 1801 121 11 18 chr15 93191502 93191775 -8188746 + AluSx SINE Alu 1 271 -41 1780 163 94 131 chr15 93191775 93191904 -8188617 + L1MC3 LINE L1 7306 7438 -347 6056 101 73 0 chr15 93191904 93192825 -8187696 - L1PA13 LINE L1 0 6163 5227 1780 163 94 131 chr15 93192825 93193197 -8187324 + L1MC3 LINE L1 7438 7784 -1 253 247 11 11 chr15 93193823 93193916 -8186605 + GA-rich Low_complexity Low_complexity 4 96 0 245 164 0 18 chr15 93194332 93194387 -8186134 + CT-rich Low_complexity Low_complexity 1 54 0 1220 88 0 0 chr15 93195243 93195402 -8185119 + AluY SINE Alu 143 301 -10 1367 192 92 15 chr15 93195685 93195956 -8184565 + AluJo SINE Alu 3 294 -8 1997 108 70 0 chr15 93196061 93196347 -8184174 + AluSx SINE Alu 1 306 -6 318 289 11 0 chr15 93197840 93197930 -8182591 + MIR SINE MIR 138 228 -34 2747 29 0 0 chr15 93197930 93198241 -8182280 + AluY SINE Alu 1 311 0 782 172 7 14 chr15 93198241 93198386 -8182135 + AluJo SINE Alu 126 269 -43 209 161 0 0 chr15 93198393 93198424 -8182097 + polypurine Low_complexity Low_complexity 4 34 0 699 166 11 28 chr15 93198424 93198605 -8181916 + GA-rich Low_complexity Low_complexity 1 178 0 1291 243 19 22 chr15 93198975 93199341 -8181180 + MLT1A1 LTR MaLR 1 365 0 2048 121 7 0 chr15 93199441 93199766 -8180755 + AluSx SINE Alu 1 327 0 249 109 22 22 chr15 93200932 93200978 -8179543 - L1MC4a LINE L1 -1167 6641 6596 207 220 69 5 chr15 93201005 93201096 -8179425 + (TA)n Simple_repeat Simple_repeat 1 85 -457 1727 187 7 3 chr15 93201096 93201385 -8179136 + AluJo SINE Alu 1 290 -22 207 220 69 5 chr15 93201385 93201515 -8179006 + (TA)n Simple_repeat Simple_repeat 85 542 0 526 268 16 48 chr15 93201515 93201765 -8178756 - L1MC4 LINE L1 -1341 6701 6460 211 271 19 47 chr15 93201922 93202029 -8178492 + GA-rich Low_complexity Low_complexity 4 107 0 499 225 152 26 chr15 93202037 93202058 -8178463 - MER5C DNA MER1_type -76 248 231 2408 84 0 0 chr15 93202058 93202355 -8178166 + AluY SINE Alu 1 297 -14 499 225 152 26 chr15 93202355 93202524 -8177997 - MER5C DNA MER1_type -93 231 34 284 294 22 0 chr15 93202951 93203043 -8177478 - L1M4 LINE L1 -854 5292 5199 397 324 35 21 chr15 93203357 93203697 -8176824 - L1M4 LINE L1 -1310 4836 4492 24 53 0 0 chr15 93203831 93203869 -8176652 + AT_rich Low_complexity Low_complexity 1 38 0 2341 94 0 0 chr15 93204923 93205230 -8175291 - AluY SINE Alu -4 307 1 318 206 0 0 chr15 93205366 93205434 -8175087 + GA-rich Low_complexity Low_complexity 5 72 0 260 268 122 0 chr15 93205505 93205587 -8174934 - MLT1H LTR MaLR -3 546 455 305 270 144 18 chr15 93205636 93205747 -8174774 - MLT1H LTR MaLR -188 361 237 828 11 0 0 chr15 93205782 93205875 -8174646 - AluSc SINE Alu -4 305 213 1507 185 54 7 chr15 93207191 93207489 -8173032 + AluJb SINE Alu 1 312 0 929 298 138 29 chr15 93208441 93208884 -8171637 - LTR33 LTR ERVL -29 492 2 2058 96 0 4 chr15 93209103 93209375 -8171146 - AluSx SINE Alu -41 271 1 203 311 38 47 chr15 93209543 93209649 -8170872 + MIR SINE MIR 23 127 -81 1611 186 4 4 chr15 93210524 93210798 -8169723 + AluJb SINE Alu 7 280 -32 261 0 0 0 chr15 93210799 93210828 -8169693 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 600 248 119 42 chr15 93211428 93211739 -8168782 + L2 LINE L2 2176 2510 -804 2164 124 23 0 chr15 93211750 93212056 -8168465 - AluSq SINE Alu 0 313 1 314 259 54 0 chr15 93212102 93212214 -8168307 - L1ME2 LINE L1 -173 5991 5874 916 152 17 143 chr15 93212224 93212455 -8168066 - AluJo SINE Alu -26 286 85 1941 227 127 2 chr15 93212461 93213100 -8167421 - L1ME2 LINE L1 -302 5864 5159 258 227 0 0 chr15 93213102 93213177 -8167344 + CT-rich Low_complexity Low_complexity 2 76 0 444 289 67 19 chr15 93213193 93213401 -8167120 - L1ME2 LINE L1 -1914 4232 4015 3814 261 38 21 chr15 93213530 93214936 -8165585 - L1P LINE L1 -2563 3583 2154 1684 213 103 42 chr15 93215260 93215944 -8164577 + L1ME1 LINE L1 1755 2506 -3920 189 0 0 0 chr15 93215944 93215965 -8164556 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 1684 213 103 42 chr15 93215965 93215998 -8164523 + L1ME1 LINE L1 2506 2536 -3890 2444 67 0 3 chr15 93216029 93216326 -8164195 + AluY SINE Alu 1 296 -15 662 48 0 0 chr15 93216326 93216410 -8164111 - L1PA5 LINE L1 -922 5224 5141 8089 31 1 0 chr15 93216418 93217316 -8163205 + L1PA5 LINE L1 5254 6152 -2 3087 249 26 18 chr15 93217316 93218377 -8162144 + L1ME1 LINE L1 2555 3624 -2802 643 228 66 45 chr15 93218397 93218783 -8161738 + L1ME1 LINE L1 5808 6355 -91 258 294 151 8 chr15 93219395 93219521 -8161000 + L3 LINE CR1 1429 1572 -5 251 304 13 13 chr15 93219588 93219667 -8160854 + L3 LINE CR1 1499 1577 0 207 204 0 0 chr15 93220098 93220147 -8160374 + (CA)n Simple_repeat Simple_repeat 2 50 0 452 238 136 27 chr15 93220627 93220774 -8159747 + MIR SINE MIR 66 228 -34 234 0 0 0 chr15 93220798 93220824 -8159697 + (T)n Simple_repeat Simple_repeat 1 26 0 806 360 32 36 chr15 93222852 93223440 -8157081 + L1PA13 LINE L1 788 1373 -6201 262 340 52 10 chr15 93223576 93223673 -8156848 + L1PA13 LINE L1 2082 2182 -5399 3560 237 54 41 chr15 93223903 93225283 -8155238 + L1PA13 LINE L1 2182 3592 -3992 762 290 30 7 chr15 93225420 93225689 -8154832 - L1M4 LINE L1 -2246 3900 3626 554 284 94 33 chr15 93225714 93226076 -8154445 - L1ME LINE L1 -481 5640 5257 1519 246 200 61 chr15 93226324 93227172 -8153349 + MER52A LTR ERV1 668 1755 0 408 176 29 0 chr15 93227585 93227653 -8152868 + MSTA LTR MaLR 3 72 -356 * 931 150 0 0 chr15 93227652 93227785 -8152736 + MSTB LTR MaLR 294 426 0 4672 125 44 55 chr15 93227861 93228655 -8151866 + LTR1 LTR ERV1 1 785 0 258 331 42 54 chr15 93228674 93228840 -8151681 + MIR SINE MIR 28 140 -68 539 237 0 30 chr15 93230086 93230217 -8150304 - MER58C DNA MER1_type 0 215 89 720 275 121 41 chr15 93230328 93230815 -8149706 - L1ME3A LINE L1 -327 5843 5318 1155 216 87 58 chr15 93230824 93231332 -8149189 + MER39 LTR ERV1 1 628 -23 247 304 60 6 chr15 93231359 93231527 -8148994 - L1ME3A LINE L1 -838 5308 5132 2054 112 17 0 chr15 93232053 93232340 -8148181 - AluSg SINE Alu -18 292 1 237 229 28 138 chr15 93232514 93232623 -8147898 - MIR SINE MIR -66 196 100 2037 117 0 7 chr15 93232770 93233060 -8147461 + AluSx SINE Alu 1 288 -24 27 29 0 0 chr15 93233387 93233421 -8147100 + AT_rich Low_complexity Low_complexity 1 34 0 1764 84 108 241 chr15 93233473 93234029 -8146492 - LTR12 LTR ERV1 -232 482 1 1487 163 3 63 chr15 93234029 93234329 -8146192 + AluJo SINE Alu 31 312 0 185 94 31 0 chr15 93236339 93236371 -8144150 + (CATA)n Simple_repeat Simple_repeat 3 35 0 1746 158 11 11 chr15 93236463 93236776 -8143745 + AluSx SINE Alu 1 313 0 2353 183 20 100 chr15 93236970 93237659 -8142862 + LTR28 LTR ERV1 1 636 0 229 247 55 0 chr15 93237684 93237757 -8142764 - MLT1J2 LTR MaLR -129 321 245 2147 123 0 10 chr15 93238704 93239006 -8141515 + AluSx SINE Alu 1 299 -13 532 262 66 16 chr15 93239441 93239624 -8140897 - MIR SINE MIR -51 211 20 21 36 0 0 chr15 93239633 93239661 -8140860 + AT_rich Low_complexity Low_complexity 1 28 0 1103 199 107 59 chr15 93239854 93240246 -8140275 - LTR37A LTR ERV1 0 426 16 31 99 0 0 chr15 93241268 93241369 -8139152 + GC_rich Low_complexity Low_complexity 1 101 0 21 36 0 0 chr15 93241520 93241548 -8138973 + GC_rich Low_complexity Low_complexity 1 28 0 582 282 63 0 chr15 93241929 93242135 -8138386 - MIR SINE MIR -26 236 18 2107 116 3 10 chr15 93242936 93243238 -8137283 + AluSx SINE Alu 1 300 -12 223 240 0 0 chr15 93243292 93243342 -8137179 - L2 LINE L2 -2 3311 3262 1020 135 45 0 chr15 93243342 93243498 -8137023 - AluSg/x SINE Alu -9 303 141 238 352 19 0 chr15 93243615 93243720 -8136801 + L2 LINE L2 2311 2417 -897 1461 137 68 28 chr15 93243741 93243990 -8136531 - THE1B LTR MaLR -105 259 1 276 378 49 20 chr15 93244150 93244396 -8136125 - L2 LINE L2 -2494 820 568 1542 176 68 33 chr15 93244576 93244884 -8135637 - L1PA16 LINE L1 -1 6154 5827 2279 100 7 3 chr15 93244884 93245185 -8135336 - AluY SINE Alu -9 302 1 1542 176 68 33 chr15 93245185 93245215 -8135306 - L1PA16 LINE L1 -328 5827 5800 2177 250 64 41 chr15 93245407 93246000 -8134521 - L1MCb LINE L1 -4849 1196 618 1007 237 65 79 chr15 93246000 93246367 -8134154 + MLT1A1 LTR MaLR 4 365 0 2739 147 21 9 chr15 93246369 93246790 -8133731 - MSTB LTR MaLR 0 426 1 2177 250 64 41 chr15 93246790 93247291 -8133230 - L1MCb LINE L1 -5427 618 570 1284 296 35 50 chr15 93247373 93247978 -8132543 - L1MCb LINE L1 -5449 596 1 681 259 109 27 chr15 93248000 93248293 -8132228 - L1MEc LINE L1 -2293 3922 3606 * 917 237 112 76 chr15 93248289 93248705 -8131816 - L1MEc LINE L1 -3459 2756 2356 1460 218 0 16 chr15 93248705 93249012 -8131509 - AluJo SINE Alu -10 302 1 917 237 112 76 chr15 93249012 93249485 -8131036 - L1MEc LINE L1 -3859 2356 1858 * 3322 205 11 22 chr15 93249466 93250058 -8130463 - L1MA10 LINE L1 -40 6294 5710 2611 99 45 11 chr15 93250058 93250410 -8130111 - THE1B LTR MaLR 0 364 1 3322 205 11 22 chr15 93250410 93250552 -8129969 - L1MA10 LINE L1 -624 5710 5568 1814 143 148 40 chr15 93250759 93250982 -8129539 - MSTA LTR MaLR 0 428 231 1941 148 7 3 chr15 93250982 93251279 -8129242 - AluSg SINE Alu -12 298 1 1814 143 148 40 chr15 93251279 93251434 -8129087 - MSTA LTR MaLR -197 231 9 1498 242 28 14 chr15 93251463 93251823 -8128698 - MLT1A1 LTR MaLR 0 365 1 1778 173 18 0 chr15 93251845 93252128 -8128393 + AluJb SINE Alu 1 288 -24 310 90 51 13 chr15 93253631 93253709 -8126812 + (TG)n Simple_repeat Simple_repeat 1 81 0 1152 84 0 0 chr15 93253999 93254142 -8126379 - L1PA8 LINE L1 -14 6158 6016 2837 180 90 0 chr15 93254438 93254993 -8125528 - L1MB5 LINE L1 0 6174 5570 313 283 14 58 chr15 93255134 93255272 -8125249 + MIR SINE MIR 84 215 -47 918 302 93 21 chr15 93255621 93256050 -8124471 + L2 LINE L2 2714 3186 -127 198 103 0 0 chr15 93256050 93256079 -8124442 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 918 302 93 21 chr15 93256079 93256203 -8124318 + L2 LINE L2 3186 3300 -13 402 331 24 8 chr15 93257232 93257359 -8123162 + MIR SINE MIR 14 142 -120 243 268 37 0 chr15 93257394 93257476 -8123045 + L2 LINE L2 3004 3088 -225 603 112 45 0 chr15 93258317 93258406 -8122115 + MER21A LTR ERV1 546 638 -293 792 222 44 107 chr15 93258481 93259083 -8121438 - MER52A LTR ERV1 -311 1233 1 8520 178 56 21 chr15 93259084 93259131 -8121390 - MER52A-int LTR ERV1 -1 6934 6890 3078 85 23 7 chr15 93259131 93259568 -8120953 + MLT2A1 LTR ERVL 1 444 0 8520 178 56 21 chr15 93259568 93261644 -8118877 - MER52A-int LTR ERV1 -45 6890 2227 3415 137 87 35 chr15 93261636 93262839 -8117682 - LTR28-int LTR ERV1 -2625 3321 1976 * 803 127 47 33 chr15 93262848 93262998 -8117523 - LTR28-int LTR ERV1 -4805 1141 990 484 161 0 12 chr15 93263001 93263082 -8117439 - LTR28-int LTR ERV1 -889 3991 3912 8028 176 35 35 chr15 93263087 93264761 -8115760 - LTR28-int LTR ERV1 -5180 2238 6 1373 251 160 65 chr15 93264766 93265773 -8114748 - LTR28 LTR ERV1 0 1755 1 1663 155 58 4 chr15 93265774 93266052 -8114469 + MER21A LTR ERV1 639 931 0 1080 208 29 102 chr15 93266052 93266394 -8114127 + MLT1D-int LTR MaLR 1055 1371 0 1395 218 91 44 chr15 93266396 93266859 -8113662 + MLT1D LTR MaLR 3 496 -9 1317 274 83 53 chr15 93266860 93268231 -8112290 - L1M3 LINE L1 -378 5793 4333 1497 215 0 17 chr15 93268231 93268524 -8111997 + AluJb SINE Alu 1 288 -24 1317 274 83 53 chr15 93268524 93268912 -8111609 - L1M3 LINE L1 -1838 4333 3958 2039 58 29 29 chr15 93272134 93272408 -8108113 - AluY SINE Alu -3 308 35 258 294 87 11 chr15 93272606 93272698 -8107823 + L1PA15-16 LINE L1 210 308 -6541 653 285 79 9 chr15 93273375 93273603 -8106918 + MIR SINE MIR 2 245 -17 198 430 20 0 chr15 93273938 93274089 -8106432 + L2 LINE L2 2880 3033 -239 254 265 102 31 chr15 93274611 93274709 -8105812 + L2 LINE L2 3209 3313 0 1485 186 84 28 chr15 93274888 93275243 -8105278 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr15 93275358 93275379 -8105142 + AT_rich Low_complexity Low_complexity 1 21 0 372 324 16 38 chr15 93276442 93276627 -8103894 + MIR3 SINE MIR 14 194 -14 23 0 0 0 chr15 93277338 93277361 -8103160 + AT_rich Low_complexity Low_complexity 1 23 0 234 62 0 0 chr15 93277367 93277399 -8103122 + (TG)n Simple_repeat Simple_repeat 1 32 0 386 295 39 43 chr15 93277440 93277780 -8102741 - L1MC4a LINE L1 -519 5647 5567 237 237 105 0 chr15 93277808 93277884 -8102637 - L1MC4a LINE L1 -2404 5404 5321 354 352 14 37 chr15 93277884 93278100 -8102421 + L1M4 LINE L1 4909 5119 -1027 355 360 38 27 chr15 93278249 93278619 -8101902 + L1MCc LINE L1 37 410 -6013 715 266 137 23 chr15 93278799 93279435 -8101086 - L1ME3 LINE L1 -221 5949 5258 605 278 111 8 chr15 93279555 93279925 -8100596 - L1ME3 LINE L1 -1712 4434 4027 1510 198 100 60 chr15 93280117 93280618 -8099903 + LTR29 LTR ERV1 1 521 -101 27 0 0 0 chr15 93280672 93280699 -8099822 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr15 93281110 93281131 -8099390 + AT_rich Low_complexity Low_complexity 1 21 0 641 199 20 97 chr15 93281287 93281483 -8099038 + MER20 DNA MER1_type 38 218 -1 2492 127 24 14 chr15 93282912 93283336 -8097185 + MSTA LTR MaLR 1 428 0 211 318 23 11 chr15 93283430 93283518 -8097003 + L3 LINE CR1 914 1002 -575 295 319 189 11 chr15 93283585 93283776 -8096745 - MIR SINE MIR -29 233 9 495 331 71 8 chr15 93283801 93284067 -8096454 + L3 LINE CR1 1096 1378 -199 197 362 105 0 chr15 93284158 93284263 -8096258 + L3 LINE CR1 1445 1560 -17 1334 248 68 99 chr15 93285332 93286042 -8094479 + MER21B LTR ERV1 27 714 -149 554 319 20 0 chr15 93286113 93286317 -8094204 + MIR SINE MIR 9 216 -46 1836 208 15 74 chr15 93286318 93286793 -8093728 - LTR8 LTR ERV1 -1 690 244 989 134 0 38 chr15 93286793 93286950 -8093571 - AluJb SINE Alu -6 306 156 992 181 10 49 chr15 93286950 93287155 -8093366 - LTR8 LTR ERV1 -494 197 1 1085 266 36 7 chr15 93288382 93289205 -8091316 - L1ME1 LINE L1 -6 6094 5122 5437 133 44 11 chr15 93289215 93290345 -8090176 - L1PA16 LINE L1 0 6166 5000 3739 255 9 98 chr15 93290345 93292111 -8088410 - L1PA15-16 LINE L1 -2852 3997 2389 6825 195 13 6 chr15 93292120 93293675 -8086846 - L1PA15-16 LINE L1 -5381 1468 9 23 68 0 0 chr15 93293933 93293977 -8086544 + AT_rich Low_complexity Low_complexity 1 44 0 732 230 132 4 chr15 93293992 93294227 -8086294 - L1ME1 LINE L1 -1031 5049 4785 348 282 35 10 chr15 93294240 93294442 -8086079 - L1ME1 LINE L1 -1610 4470 4264 1262 272 88 26 chr15 93294659 93295306 -8085215 - L1ME1 LINE L1 -1955 4125 3439 1989 234 33 49 chr15 93295328 93295880 -8084641 + MER77 LTR ERV1 53 595 -10 2597 250 56 60 chr15 93295899 93297185 -8083336 - L1ME1 LINE L1 -2672 3408 2128 1514 276 38 11 chr15 93297214 93297744 -8082777 - L1ME1 LINE L1 -5254 816 273 255 167 0 0 chr15 93298338 93298380 -8082141 + 5S rRNA rRNA 1 42 -79 2364 83 0 13 chr15 93300808 93301120 -8079401 - AluSc SINE Alu -1 308 1 225 266 16 0 chr15 93301123 93301187 -8079334 - MER63 DNA MER1_type -35 1027 963 * 454 171 25 2 chr15 93301158 93301251 -8079270 - MER63 DNA MER1_type -85 751 657 181 227 45 23 chr15 93301698 93301742 -8078779 - L2 LINE L2 -4 3309 3265 252 0 0 0 chr15 93303196 93303224 -8077297 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1757 171 135 26 chr15 93303575 93303961 -8076560 - MSTA LTR MaLR 0 428 1 1533 234 24 9 chr15 93304285 93304623 -8075898 - MER77 LTR ERV1 -40 565 223 668 202 47 94 chr15 93304694 93304927 -8075594 - MER77 LTR ERV1 -379 226 5 227 228 51 25 chr15 93306902 93306981 -8073540 + Charlie8 DNA MER1_type 91 171 -2246 1967 137 45 3 chr15 93307628 93307920 -8072601 - AluSx SINE Alu -8 304 1 266 150 0 33 chr15 93309383 93309443 -8071078 + (TTCC)n Simple_repeat Simple_repeat 2 59 0 1621 213 0 3 chr15 93309705 93309996 -8070525 + AluJo SINE Alu 1 290 -22 22 0 0 0 chr15 93309996 93310018 -8070503 + AT_rich Low_complexity Low_complexity 1 22 0 231 319 167 0 chr15 93310286 93310424 -8070097 - MIR SINE MIR -4 258 98 2265 114 0 0 chr15 93310434 93310732 -8069789 + AluSg SINE Alu 6 303 -7 207 266 0 47 chr15 93312458 93312522 -8067999 + GA-rich Low_complexity Low_complexity 5 65 0 423 312 127 14 chr15 93314599 93314820 -8065701 + MIR SINE MIR 15 260 -2 901 192 0 0 chr15 93316017 93316168 -8064353 - AluJo SINE Alu -15 287 137 272 59 0 0 chr15 93316179 93316213 -8064308 - AluJo SINE Alu -176 126 93 1853 130 73 17 chr15 93316215 93316570 -8063951 - THE1C LTR MaLR 0 375 1 8612 133 88 19 chr15 93316572 93318047 -8062474 - THE1C-int LTR MaLR -2 1578 3 1997 141 46 27 chr15 93318049 93318417 -8062104 - THE1C LTR MaLR 0 375 1 521 204 11 0 chr15 93318417 93318510 -8062011 - AluJo SINE Alu -218 94 1 21 0 0 0 chr15 93319223 93319244 -8061277 + AT_rich Low_complexity Low_complexity 1 21 0 1953 129 45 6 chr15 93319309 93319620 -8060901 + MER7A DNA MER2_type 2 322 -24 266 138 4 39 chr15 93320902 93320959 -8059562 - MLT2A2 LTR ERVL 0 520 397 27 29 0 0 chr15 93320968 93321002 -8059519 + AT_rich Low_complexity Low_complexity 1 34 0 1928 170 38 24 chr15 93321008 93321509 -8059012 - MLT2A2 LTR ERVL -40 508 1 845 269 14 21 chr15 93321511 93321953 -8058568 - L1MEc LINE L1 -3646 2894 2493 984 147 0 0 chr15 93321957 93322114 -8058407 - AluSg/x SINE Alu 0 312 156 370 214 143 29 chr15 93322114 93322254 -8058267 - L1MEc LINE L1 -4060 2516 2325 1513 182 14 11 chr15 93322388 93322663 -8057858 - Tigger3b DNA MER2_type -955 276 1 583 311 16 8 chr15 93322712 93322956 -8057565 - L1MEc LINE L1 -4613 2108 1863 1196 268 141 25 chr15 93322988 93323462 -8057059 + L1MCb LINE L1 1 529 -5516 1828 251 9 21 chr15 93323724 93324251 -8056270 - MLT2B1 LTR ERVL -11 504 1 183 161 0 0 chr15 93324703 93324734 -8055787 + MIR SINE MIR 124 154 -108 1982 154 129 0 chr15 93324765 93325168 -8055353 - L1MA8 LINE L1 -6 6285 5831 231 36 0 0 chr15 93325170 93325198 -8055323 + (TCC)n Simple_repeat Simple_repeat 1 28 0 22 35 0 0 chr15 93325198 93325227 -8055294 + GC_rich Low_complexity Low_complexity 1 29 0 745 173 149 36 chr15 93325232 93325400 -8055121 - AluJb SINE Alu -39 273 87 488 226 28 0 chr15 93325392 93325498 -8055023 + AluJb SINE Alu 165 273 -39 * 913 124 0 27 chr15 93325498 93325683 -8054838 + (GGA)n Simple_repeat Simple_repeat 1 180 0 413 232 0 0 chr15 93325774 93325856 -8054665 - AluJb SINE Alu -228 84 3 1524 176 13 19 chr15 93325859 93326172 -8054349 - L1MA8 LINE L1 -472 5819 5509 2025 147 0 3 chr15 93327088 93327387 -8053134 - AluSx SINE Alu -14 298 1 314 220 22 0 chr15 93327418 93327509 -8053012 - L1MA10 LINE L1 -1 6333 6241 2025 259 53 28 chr15 93327552 93328877 -8051644 - L1ME1 LINE L1 -92 6143 4853 1931 125 11 4 chr15 93328877 93329177 -8051344 - AluSx SINE Alu 0 302 1 2025 259 53 28 chr15 93329177 93330055 -8050466 - L1ME1 LINE L1 -1382 4853 3827 2275 95 3 3 chr15 93330055 93330359 -8050162 - AluSg SINE Alu -4 306 3 2025 259 53 28 chr15 93330359 93330580 -8049941 - L1ME1 LINE L1 -2408 3827 3613 2612 130 2 0 chr15 93330927 93331328 -8049193 - L1PA13 LINE L1 0 6163 5762 309 154 19 0 chr15 93331347 93331399 -8049122 - L1ME1 LINE L1 -2608 3607 3555 245 271 119 17 chr15 93331405 93331582 -8048939 - L1ME1 LINE L1 -2698 3517 3323 980 156 33 28 chr15 93331584 93331796 -8048725 - L1MA7 LINE L1 0 6291 6079 335 170 35 4 chr15 93331796 93331887 -8048634 + L1MA9 LINE L1 5982 6071 -229 1398 263 66 27 chr15 93331943 93332510 -8048011 - L1ME1 LINE L1 -2920 3295 2697 1606 183 0 14 chr15 93332510 93332795 -8047726 - AluJo SINE Alu -19 293 13 1398 263 66 27 chr15 93332795 93332893 -8047628 - L1ME1 LINE L1 -3518 2697 2604 1868 292 76 28 chr15 93332901 93333001 -8047520 - L1ME1 LINE L1 -5484 912 818 2336 105 0 0 chr15 93333001 93333306 -8047215 - AluSx SINE Alu -5 307 3 1868 292 76 28 chr15 93333306 93334024 -8046497 - L1ME1 LINE L1 -5578 818 55 309 253 0 13 chr15 93334145 93334224 -8046297 - MLT1I LTR MaLR -4 405 328 494 299 127 23 chr15 93334468 93334909 -8045612 - L1ME3A LINE L1 -310 5843 5357 213 39 0 0 chr15 93334972 93334998 -8045523 + (TTC)n Simple_repeat Simple_repeat 2 27 0 302 277 63 57 chr15 93335022 93335354 -8045167 - L1ME3A LINE L1 -871 5258 4925 277 292 109 26 chr15 93335678 93335870 -8044651 - HAL1 LINE L1 -869 1638 1431 441 303 65 54 chr15 93336045 93336227 -8044294 - L1ME3A LINE L1 -4958 1161 973 2321 84 3 0 chr15 93336227 93336523 -8043998 - AluY SINE Alu -14 297 1 441 303 65 54 chr15 93336523 93336634 -8043887 - L1ME3A LINE L1 -5146 973 865 25 51 0 0 chr15 93336647 93336686 -8043835 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr15 93336837 93336858 -8043663 + AT_rich Low_complexity Low_complexity 1 21 0 312 296 167 38 chr15 93337038 93337224 -8043297 - L1ME3A LINE L1 -5625 494 285 672 310 120 66 chr15 93337497 93338473 -8042048 - L2 LINE L2 -5 3308 2263 344 371 104 23 chr15 93338611 93338832 -8041689 + L1ME LINE L1 5446 5684 -437 4363 267 83 22 chr15 93339099 93341991 -8038530 + L1M2c LINE L1 8 2855 -3933 886 207 28 6 chr15 93341997 93342176 -8038345 + AluJo SINE Alu 1 183 -129 655 291 78 5 chr15 93342178 93342384 -8038137 + L1MA6 LINE L1 348 568 -6221 680 168 9 0 chr15 93342401 93342508 -8038013 + AluJo SINE Alu 179 286 -26 7217 266 65 7 chr15 93342524 93345444 -8035077 + L1MA6 LINE L1 2844 5968 -974 183 42 0 0 chr15 93345444 93345468 -8035053 + (CAA)n Simple_repeat Simple_repeat 2 25 0 7217 266 65 7 chr15 93345468 93345751 -8034770 + L1MA6 LINE L1 5968 6233 -709 188 61 61 0 chr15 93345751 93345784 -8034737 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1162 217 177 0 chr15 93345962 93346330 -8034191 - L1MC4 LINE L1 -372 7670 7238 488 128 26 0 chr15 93346388 93346466 -8034055 - L1MC4 LINE L1 -1020 7022 6943 3462 159 7 34 chr15 93346467 93346956 -8033565 + L1MA6 LINE L1 6230 6694 -248 2292 77 0 0 chr15 93346956 93347267 -8033254 - AluY SINE Alu 0 311 1 3462 159 7 34 chr15 93347267 93347505 -8033016 + L1MA6 LINE L1 6694 6937 -5 313 231 116 33 chr15 93347808 93347929 -8032592 + L1ME4a LINE L1 5991 6121 0 243 228 13 63 chr15 93348366 93348445 -8032076 + MIR SINE MIR 81 155 -107 1857 112 76 4 chr15 93348712 93348989 -8031532 - AluSg SINE Alu -13 297 1 383 248 23 98 chr15 93350696 93350829 -8029692 - L2 LINE L2 0 3272 3150 23 86 0 0 chr15 93353252 93353310 -8027211 + AT_rich Low_complexity Low_complexity 1 58 0 267 103 0 0 chr15 93353808 93353847 -8026674 + (TA)n Simple_repeat Simple_repeat 2 40 0 2222 112 3 0 chr15 93355367 93355671 -8024850 + AluY SINE Alu 2 306 -5 498 192 32 24 chr15 93355800 93355925 -8024596 + MER97a DNA MER1_type? 7 132 -762 2141 115 0 3 chr15 93357197 93357492 -8023029 - AluSg SINE Alu -16 294 1 2615 58 0 0 chr15 93357498 93357806 -8022715 - AluY SINE Alu -3 308 1 349 339 82 22 chr15 93357962 93358145 -8022376 - MIR SINE MIR 0 262 69 22 56 0 0 chr15 93358223 93358259 -8022262 + AT_rich Low_complexity Low_complexity 1 36 0 1204 242 81 80 chr15 93358560 93358908 -8021613 - L1MC5 LINE L1 -434 7527 7181 2029 107 11 0 chr15 93358908 93359219 -8021302 - AluSp SINE Alu 0 314 1 1204 242 81 80 chr15 93359219 93359649 -8020872 - L1MC5 LINE L1 -780 7181 6747 1404 196 70 43 chr15 93359658 93360031 -8020490 + MLT1B LTR MaLR 1 383 -7 282 299 110 18 chr15 93360037 93360144 -8020377 - L1MC4a LINE L1 -1088 6720 6591 273 118 0 0 chr15 93360144 93360195 -8020326 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 282 299 110 18 chr15 93360195 93360251 -8020270 - L1MC4a LINE L1 -1217 6591 6542 820 149 8 15 chr15 93360341 93360475 -8020046 + FLAM_C SINE Alu 1 133 0 388 179 0 11 chr15 93361235 93361330 -8019191 + L1M4 LINE L1 5237 5330 -816 2341 88 3 0 chr15 93361332 93361637 -8018884 + AluY SINE Alu 1 306 -5 5299 167 21 17 chr15 93361646 93363067 -8017454 + L1PA15 LINE L1 4728 6144 -21 1375 181 13 7 chr15 93363083 93363382 -8017139 + L1M4 LINE L1 5296 5596 -578 454 176 55 0 chr15 93364468 93364559 -8015962 + MER7A DNA MER2_type 1 94 -252 584 175 16 40 chr15 93366092 93366218 -8014303 + MER7A DNA MER2_type 214 336 0 2301 261 88 1 chr15 93366770 93367497 -8013024 + L1MD1 LINE L1 14 803 -5737 294 281 0 0 chr15 93367528 93367592 -8012929 + L1MD1 LINE L1 894 957 -5583 2246 135 44 0 chr15 93367595 93368150 -8012371 + L1PA11 LINE L1 5080 5653 -521 294 229 48 14 chr15 93368473 93368592 -8011929 + L1M2a LINE L1 1 1272 -5816 1314 248 3 0 chr15 93368721 93369076 -8011445 + L1M2a LINE L1 3371 3726 -3441 * 2965 188 68 6 chr15 93369063 93369712 -8010809 + L1MB3 LINE L1 5493 6181 -2 1419 200 48 14 chr15 93369969 93370264 -8010257 + AluJo SINE Alu 1 305 -7 2299 73 10 10 chr15 93371071 93371372 -8009149 + AluSg SINE Alu 1 301 -9 1403 124 70 12 chr15 93371560 93371802 -8008719 + L1PA11 LINE L1 5916 6171 -3 544 167 46 0 chr15 93371811 93371919 -8008602 + L1MD1 LINE L1 949 1061 -5479 1248 253 64 21 chr15 93371938 93372314 -8008207 + MER77 LTR ERV1 41 432 -173 1608 120 9 0 chr15 93372319 93372544 -8007977 + AluSq SINE Alu 25 251 -62 276 100 0 0 chr15 93372544 93372584 -8007937 + (A)n Simple_repeat Simple_repeat 1 40 0 563 196 59 103 chr15 93372603 93372807 -8007714 + MER77 LTR ERV1 405 599 -6 4062 219 46 67 chr15 93372814 93375610 -8004911 + L1MD1 LINE L1 1073 3879 -2661 528 228 45 86 chr15 93375658 93375926 -8004595 + L1MD1 LINE L1 4185 4441 -2099 * 1650 197 45 30 chr15 93375920 93376586 -8003935 + L1MD1 LINE L1 5192 5873 -748 209 238 40 0 chr15 93376589 93376690 -8003831 + (TA)n Simple_repeat Simple_repeat 2 106 0 2202 168 13 25 chr15 93376781 93377256 -8003265 + L1MD1 LINE L1 5881 6349 -287 793 277 34 30 chr15 93377531 93377971 -8002550 + L1MD1 LINE L1 6134 6575 -61 335 371 129 19 chr15 93378178 93378310 -8002211 + L2 LINE L2 2959 3075 -197 2182 119 6 0 chr15 93378310 93378621 -8001900 - AluSq SINE Alu 0 313 1 335 371 129 19 chr15 93378621 93378752 -8001769 + L2 LINE L2 3075 3251 -21 1725 174 120 31 chr15 93379124 93379515 -8001006 - MSTB LTR MaLR 0 426 1 329 247 24 0 chr15 93380337 93380422 -8000099 - MIR SINE MIR -5 257 171 847 297 67 22 chr15 93380452 93380856 -7999665 - LTR33 LTR ERVL -56 465 44 23 54 0 0 chr15 93380916 93380953 -7999568 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr15 93381892 93381916 -7998605 + AT_rich Low_complexity Low_complexity 1 24 0 272 248 53 90 chr15 93382875 93383008 -7997513 + MIR SINE MIR 76 203 -59 4242 135 100 14 chr15 93383550 93384311 -7996210 + LTR1B LTR ERV1 1 826 0 2170 119 0 0 chr15 93384495 93384819 -7995702 + AluSq SINE Alu 1 324 0 2258 108 0 16 chr15 93384864 93385179 -7995342 + AluSx SINE Alu 1 310 -2 220 133 67 0 chr15 93385733 93385778 -7994743 + A-rich Low_complexity Low_complexity 1 48 0 802 306 73 40 chr15 93386407 93386654 -7993867 + L1 LINE L1 2890 3127 -3019 2244 93 10 3 chr15 93386654 93386955 -7993566 + AluY SINE Alu 1 303 -8 802 306 73 40 chr15 93386955 93387188 -7993333 + L1 LINE L1 3127 3386 -2760 275 265 102 25 chr15 93387347 93387543 -7992978 + L1 LINE L1 3601 3811 -2335 2247 90 0 0 chr15 93388149 93388455 -7992066 + AluY SINE Alu 2 307 0 23 0 0 0 chr15 93388921 93388944 -7991577 + AT_rich Low_complexity Low_complexity 1 23 0 300 208 0 13 chr15 93388958 93389035 -7991486 + L1MA8 LINE L1 6106 6181 -110 326 125 47 0 chr15 93389039 93389103 -7991418 + L1MA7 LINE L1 6219 6285 -6 237 65 0 0 chr15 93389225 93389256 -7991265 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 3066 105 5 7 chr15 93389390 93389839 -7990682 + LTR7 LTR ERV1 1 448 -2 2047 119 18 0 chr15 93390395 93390680 -7989841 - AluSq SINE Alu -23 290 1 244 359 17 17 chr15 93393459 93393612 -7986909 - MIR SINE MIR -70 138 41 471 177 31 10 chr15 93393989 93394085 -7986436 + L1MB2 LINE L1 5448 5545 -626 1116 249 24 49 chr15 93394085 93394455 -7986066 + MLT1A2 LTR MaLR 1 361 -13 21 0 0 0 chr15 93394677 93394698 -7985823 + AT_rich Low_complexity Low_complexity 1 21 0 2966 192 32 2 chr15 93394743 93395342 -7985179 + L1MB2 LINE L1 5555 6171 0 186 250 117 17 chr15 93396112 93396172 -7984349 - L2 LINE L2 -817 2497 2432 305 212 0 0 chr15 93396179 93396245 -7984276 - MLT1E1 LTR MaLR 0 654 589 1254 251 84 26 chr15 93396569 93397068 -7983453 + MLT1E1 LTR MaLR 1 528 -126 349 188 14 0 chr15 93397083 93397152 -7983369 - MER45 DNA AcHobo 0 1581 1512 1928 157 7 0 chr15 93397156 93397450 -7983071 + AluSx SINE Alu 1 296 -16 748 306 23 11 chr15 93397678 93397939 -7982582 - MER45C DNA AcHobo -687 266 3 279 314 68 42 chr15 93398003 93398194 -7982327 - L2 LINE L2 -2277 1037 842 2309 94 0 0 chr15 93398402 93398699 -7981822 + AluSg1 SINE Alu 1 297 -12 446 99 14 0 chr15 93399325 93399396 -7981125 + L1PA8 LINE L1 6099 6170 -2 448 287 35 39 chr15 93402246 93402455 -7978066 + MIR SINE MIR 56 262 0 1727 152 55 10 chr15 93403110 93403399 -7977122 - AluJb SINE Alu -9 303 2 725 251 23 0 chr15 93403452 93403627 -7976894 + MIR SINE MIR 74 252 -10 815 200 44 6 chr15 93403725 93403905 -7976616 - MER2 DNA MER2_type 0 345 159 581 156 9 9 chr15 93403909 93404018 -7976503 + MER57A LTR ERV1 13 121 -282 5729 58 8 0 chr15 93404070 93404807 -7975714 - L1PA5 LINE L1 0 6154 5412 1346 189 7 25 chr15 93404807 93405093 -7975428 + MER57A LTR ERV1 123 403 0 593 221 87 0 chr15 93405093 93405242 -7975279 - MER2 DNA MER2_type -183 162 1 348 64 0 0 chr15 93405252 93405299 -7975222 + (CA)n Simple_repeat Simple_repeat 1 47 0 341 44 0 0 chr15 93406961 93407006 -7973515 + MADE1 DNA Mariner 2 46 -34 362 331 49 12 chr15 93407312 93407475 -7973046 + MIR3 SINE MIR 31 199 -9 234 0 0 0 chr15 93407595 93407621 -7972900 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 583 291 47 0 chr15 93407721 93407869 -7972652 + MIR SINE MIR 14 168 -94 361 252 141 0 chr15 93407915 93408050 -7972471 + L1MC4a LINE L1 5851 6004 -1804 1092 122 0 0 chr15 93408084 93408231 -7972290 + AluSg/x SINE Alu 150 296 -16 402 302 64 20 chr15 93408231 93408433 -7972088 + L1MC4a LINE L1 6056 6266 -1542 441 0 0 0 chr15 93408718 93408767 -7971754 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 563 245 67 113 chr15 93408776 93409343 -7971178 + L1MC4 LINE L1 6728 7268 -774 1543 227 47 40 chr15 93409359 93409853 -7970668 + MLT1D LTR MaLR 1 497 -8 307 320 12 23 chr15 93409862 93410034 -7970487 + L1MC4 LINE L1 7281 7450 -592 242 288 42 42 chr15 93410293 93410505 -7970016 + L1MC4 LINE L1 7691 7902 -140 1596 197 13 3 chr15 93410620 93410920 -7969601 + AluJb SINE Alu 1 303 -9 259 213 50 12 chr15 93411050 93411130 -7969391 + MIR SINE MIR 170 252 -10 319 182 0 0 chr15 93413130 93413196 -7967325 + Charlie5 DNA MER1_type 50 115 -2497 1074 70 0 0 chr15 93413271 93413399 -7967122 + AluY SINE Alu 21 148 -163 2238 116 3 0 chr15 93413502 93413813 -7966708 - AluSx SINE Alu 0 312 1 335 227 63 2 chr15 93415668 93415755 -7964766 - MIR SINE MIR -112 96 3 297 0 0 0 chr15 93415848 93415881 -7964640 + (CA)n Simple_repeat Simple_repeat 2 34 0 385 362 16 5 chr15 93416731 93416919 -7963602 + MIR3 SINE MIR 11 200 -8 303 28 0 0 chr15 93417386 93417422 -7963099 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 800 296 48 37 chr15 93417688 93418360 -7962161 - L1MEc LINE L1 -3594 2621 1969 2262 102 0 3 chr15 93418851 93419145 -7961376 + AluSq SINE Alu 1 293 -20 240 170 0 0 chr15 93420130 93420183 -7960338 + (CA)n Simple_repeat Simple_repeat 1 53 0 285 312 104 32 chr15 93420882 93421007 -7959514 - L2 LINE L2 -2 3270 3137 636 198 3 117 chr15 93422003 93422199 -7958322 + MER58A DNA MER1_type 6 182 0 2282 73 20 13 chr15 93423052 93423355 -7957166 + AluSc SINE Alu 1 305 -4 266 286 44 33 chr15 93425402 93425637 -7954884 + L1ME4a LINE L1 4735 4970 -1176 25 31 0 0 chr15 93425702 93425734 -7954787 + AT_rich Low_complexity Low_complexity 1 32 0 285 320 98 18 chr15 93425924 93426252 -7954269 + L1ME4a LINE L1 5307 5660 -2148 21 0 0 0 chr15 93426628 93426649 -7953872 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr15 93427896 93427918 -7952603 + AT_rich Low_complexity Low_complexity 1 22 0 359 288 155 41 chr15 93428261 93428532 -7951989 - L1MC4a LINE L1 -1945 5863 5562 954 337 61 42 chr15 93428551 93429028 -7951493 + L1M2c LINE L1 791 1281 -6285 3876 93 275 0 chr15 93429028 93429676 -7950845 - LTR12 LTR ERV1 0 826 1 954 337 61 42 chr15 93429676 93429741 -7950780 + L1M2c LINE L1 1281 1343 -6223 3850 245 28 23 chr15 93430078 93432884 -7947637 + L1M2c LINE L1 2097 4624 -2936 3046 160 22 5 chr15 93432884 93433439 -7947082 - L1PA15 LINE L1 0 6816 6253 10381 211 20 54 chr15 93434207 93436305 -7944216 - L1PA15 LINE L1 -551 6265 4097 2225 103 0 14 chr15 93436305 93436635 -7943886 - AluSq SINE Alu 0 326 1 10381 211 20 54 chr15 93436635 93436984 -7943537 - L1PA15 LINE L1 -2719 4097 3738 2346 61 55 0 chr15 93436984 93437277 -7943244 - AluY SINE Alu -2 309 1 955 140 7 0 chr15 93437277 93437420 -7943101 - AluY SINE Alu -167 144 1 10381 211 20 54 chr15 93437420 93438358 -7942163 - L1PA15 LINE L1 -3076 3740 2862 582 289 89 15 chr15 93438393 93438784 -7941737 + L1ME4a LINE L1 5642 6061 -60 2079 124 6 6 chr15 93438788 93439127 -7941394 - L1PB1 LINE L1 -5 6146 5808 3475 181 7 4 chr15 93439127 93439845 -7940676 - L1 LINE L1 -1490 4656 3937 13717 139 34 15 chr15 93439852 93440080 -7940441 - L1PBa LINE L1 -4273 2590 2368 2346 86 0 0 chr15 93440080 93440370 -7940151 + AluY SINE Alu 2 291 -20 13717 139 34 15 chr15 93440370 93442681 -7937840 - L1PBa LINE L1 -4495 2368 3 3900 231 64 19 chr15 93442687 93443072 -7937449 - L1PA15 LINE L1 -3931 2866 2500 2076 126 7 3 chr15 93443072 93443373 -7937148 + AluSc SINE Alu 1 302 -7 3900 231 64 19 chr15 93443373 93444531 -7935990 - L1PA15 LINE L1 -4297 2500 1266 2138 313 57 26 chr15 93444599 93445483 -7935038 - L1PA15 LINE L1 -5876 911 1 7993 186 61 24 chr15 93445496 93446162 -7934359 + L1MA6 LINE L1 3196 3836 -2464 207 0 0 0 chr15 93446162 93446185 -7934336 + (CAA)n Simple_repeat Simple_repeat 2 24 0 7993 186 61 24 chr15 93446185 93447597 -7932924 + L1MA6 LINE L1 3836 5424 -876 2416 77 0 0 chr15 93447597 93447895 -7932626 + AluY SINE Alu 1 298 -13 7993 186 61 24 chr15 93447895 93448804 -7931717 + L1MA6 LINE L1 5424 6298 -2 353 297 43 22 chr15 93448834 93449066 -7931455 - L1MC/D LINE L1 -2259 5549 5313 243 304 206 0 chr15 93449210 93449312 -7931209 - MIR SINE MIR -93 169 47 2522 104 28 8 chr15 93449517 93449874 -7930647 - THE1B LTR MaLR 0 364 1 22 35 0 0 chr15 93451146 93451175 -7929346 + AT_rich Low_complexity Low_complexity 1 29 0 302 318 45 0 chr15 93451797 93451907 -7928614 - L1ME4a LINE L1 -16 6105 5991 1588 164 7 25 chr15 93451937 93452212 -7928309 + AluJo SINE Alu 12 281 -31 276 30 0 0 chr15 93452215 93452248 -7928273 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 334 212 153 54 chr15 93452355 93452596 -7927925 - L1ME4a LINE L1 -295 5826 5562 22 35 0 0 chr15 93452640 93452669 -7927852 + AT_rich Low_complexity Low_complexity 1 29 0 281 329 57 38 chr15 93452833 93453043 -7927478 + L2 LINE L2 1221 1434 -1880 792 153 191 32 chr15 93453243 93453432 -7927089 + MER20 DNA MER1_type 1 219 0 343 224 13 13 chr15 93453448 93453524 -7926997 + MIR SINE MIR 8 83 -179 340 285 80 7 chr15 93454263 93454400 -7926121 - HAL1 LINE L1 -1399 1108 962 306 0 0 0 chr15 93454420 93454454 -7926067 + (TG)n Simple_repeat Simple_repeat 2 35 0 211 300 100 8 chr15 93454476 93454596 -7925925 + L2 LINE L2 2595 2725 -589 279 0 0 0 chr15 93454741 93454772 -7925749 + (TG)n Simple_repeat Simple_repeat 1 31 0 267 355 59 7 chr15 93454795 93454947 -7925574 + L2 LINE L2 2595 2754 -560 206 369 128 7 chr15 93455036 93455177 -7925344 + L2 LINE L2 2896 3053 -219 285 296 42 28 chr15 93456481 93456624 -7923897 + MIR SINE MIR 20 163 -76 389 198 113 0 chr15 93456777 93456883 -7923638 + L1M4 LINE L1 3638 3755 -2391 1732 189 3 3 chr15 93457209 93457505 -7923016 - AluJb SINE Alu -16 296 1 2386 79 0 0 chr15 93457804 93458096 -7922425 + AluSc SINE Alu 1 292 -17 366 23 0 0 chr15 93458885 93458928 -7921593 + (CA)n Simple_repeat Simple_repeat 2 44 0 325 312 55 0 chr15 93461789 93461898 -7918623 + L2 LINE L2 3153 3267 -5 1287 84 0 0 chr15 93463051 93463079 -7917442 + (TCCC)n Simple_repeat Simple_repeat 1 206 0 1287 84 0 0 chr15 93463079 93463257 -7917264 + (TCCC)n Simple_repeat Simple_repeat 3 180 0 314 159 58 0 chr15 93463284 93463353 -7917168 - AluSc SINE Alu -6 293 221 1471 82 0 0 chr15 93463353 93463535 -7916986 - AluSc SINE Alu -127 182 1 723 223 42 6 chr15 93463640 93463806 -7916715 - MER20 DNA MER1_type -47 172 1 233 250 0 17 chr15 93464026 93464086 -7916435 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 292 265 45 25 chr15 93464915 93465071 -7915450 + HAL1b LINE L1 1191 1327 -21 225 261 17 9 chr15 93466104 93466219 -7914302 + (TA)n Simple_repeat Simple_repeat 1 116 0 210 311 123 16 chr15 93466879 93467001 -7913520 - L2 LINE L2 -2 3311 3177 310 258 108 32 chr15 93467021 93467114 -7913407 + MIR SINE MIR 63 162 -100 2029 123 31 0 chr15 93467235 93467527 -7912994 + AluSx SINE Alu 1 301 -11 228 67 0 0 chr15 93468215 93468245 -7912276 + (TG)n Simple_repeat Simple_repeat 1 30 0 235 204 37 19 chr15 93468288 93468342 -7912179 + L2 LINE L2 3255 3309 -4 34 65 0 0 chr15 93468423 93468485 -7912036 + AT_rich Low_complexity Low_complexity 1 62 0 30 27 0 0 chr15 93468777 93468814 -7911707 + AT_rich Low_complexity Low_complexity 1 37 0 35 0 0 0 chr15 93470687 93470722 -7909799 + AT_rich Low_complexity Low_complexity 1 35 0 556 201 28 7 chr15 93471319 93471463 -7909058 - Charlie1 DNA MER1_type -1 2760 2614 3669 135 9 20 chr15 93471505 93472140 -7908381 - L1MA8 LINE L1 -7 6284 5657 605 232 71 0 chr15 93472184 93472339 -7908182 - Charlie1 DNA MER1_type -2565 196 31 1704 175 22 44 chr15 93472520 93472894 -7907627 + MLT1A1 LTR MaLR 1 467 0 259 331 110 7 chr15 93472894 93473030 -7907491 - MIR SINE MIR -88 174 25 449 289 58 24 chr15 93473068 93473276 -7907245 - MIR SINE MIR 0 262 48 347 141 16 0 chr15 93473278 93473342 -7907179 + CT-rich Low_complexity Low_complexity 1 65 0 2351 96 7 0 chr15 93473342 93473644 -7906877 - AluSc SINE Alu -5 304 1 21 0 0 0 chr15 93474770 93474791 -7905730 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr15 93475122 93475151 -7905370 + (CA)n Simple_repeat Simple_repeat 1 29 0 * 261 0 0 0 chr15 93475150 93475179 -7905342 + (TC)n Simple_repeat Simple_repeat 1 29 0 1839 89 13 0 chr15 93476821 93477058 -7903463 + AluSq SINE Alu 61 300 -13 1883 109 0 125 chr15 93477182 93477567 -7902954 - MER1B DNA MER1_type 0 337 1 1261 218 42 33 chr15 93477680 93478010 -7902511 + MLT1A2 LTR MaLR 42 374 0 68 55 0 0 chr15 93478075 93478185 -7902336 + AT_rich Low_complexity Low_complexity 1 110 0 609 243 38 94 chr15 93479008 93479230 -7901291 - L1MC4 LINE L1 -958 7084 6851 2032 103 0 55 chr15 93479230 93479542 -7900979 + AluSg SINE Alu 1 295 -15 2258 57 0 4 chr15 93479547 93479860 -7900661 + AluY SINE Alu 1 312 0 609 243 38 94 chr15 93479860 93480001 -7900520 - L1MC4 LINE L1 -1195 6847 6735 278 202 30 10 chr15 93480869 93480968 -7899553 + (TA)n Simple_repeat Simple_repeat 1 101 0 238 262 41 131 chr15 93481234 93481379 -7899142 + MIR SINE MIR 76 207 -55 1164 138 0 14 chr15 93481414 93481554 -7898967 - L1MA9 LINE L1 -1 6311 6173 2183 114 3 0 chr15 93481554 93481853 -7898668 - AluSg SINE Alu -10 300 1 1164 138 0 14 chr15 93481853 93481922 -7898599 - L1MA9 LINE L1 -139 6173 6105 598 105 21 0 chr15 93483099 93483194 -7897327 - THE1B LTR MaLR 0 364 268 * 672 106 0 10 chr15 93483192 93483296 -7897225 + THE1B LTR MaLR 262 364 0 5132 171 23 39 chr15 93483299 93483838 -7896683 - L1 LINE L1 -887 5259 4713 2213 67 44 7 chr15 93483838 93484135 -7896386 - AluY SINE Alu -3 308 1 5132 171 23 39 chr15 93484135 93484791 -7895730 - L1 LINE L1 -1433 4713 4083 3016 213 31 41 chr15 93484823 93485037 -7895484 + L1MB7 LINE L1 5154 5369 -815 2361 64 7 3 chr15 93485037 93485332 -7895189 + AluSp SINE Alu 1 296 -17 3016 213 31 41 chr15 93485332 93486155 -7894366 + L1MB7 LINE L1 5369 6176 -8 688 340 140 15 chr15 93486169 93486625 -7893896 + L1M4 LINE L1 3347 3859 -2287 698 140 119 0 chr15 93486784 93486927 -7893594 - L1PA16 LINE L1 -9 6157 5998 2293 179 24 2 chr15 93486928 93487346 -7893175 + MSTA LTR MaLR 1 427 -1 8293 186 21 0 chr15 93487348 93488889 -7891632 + MSTA-int LTR MaLR 2 1575 -76 4017 221 46 6 chr15 93488880 93489722 -7890799 - L1 LINE L1 -1586 4560 3664 * 306 50 0 0 chr15 93489722 93489762 -7890759 + (TG)n Simple_repeat Simple_repeat 2 41 0 4017 221 46 6 chr15 93489762 93489993 -7890528 - L1 LINE L1 -2482 3664 3444 2671 142 13 4 chr15 93489978 93490442 -7890079 + L1PA16 LINE L1 5458 5925 -241 * 385 154 115 0 chr15 93490442 93490520 -7890001 + AluSp/q SINE Alu 217 303 0 233 374 0 0 chr15 93491829 93491912 -7888609 - L2 LINE L2 -5 3267 3185 21 57 0 0 chr15 93491949 93491984 -7888537 + AT_rich Low_complexity Low_complexity 1 35 0 228 67 0 0 chr15 93492984 93493014 -7887507 + (CTA)n Simple_repeat Simple_repeat 3 32 0 386 329 63 0 chr15 93493096 93493239 -7887282 - MIR SINE MIR -104 158 7 180 0 0 0 chr15 93493985 93494005 -7886516 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 241 327 10 10 chr15 93494805 93494909 -7885612 + MIR SINE MIR 28 131 -77 222 191 0 24 chr15 93494989 93495031 -7885490 + polypyrimidine Low_complexity Low_complexity 3 43 0 312 238 61 164 chr15 93495509 93495723 -7884798 + MIR SINE MIR 17 208 -54 307 114 0 0 chr15 93495952 93495996 -7884525 + MER11C LTR ERVK 1 44 -1027 * 1084 75 0 0 chr15 93495995 93496141 -7884380 + MER11B LTR ERVK 1091 1236 0 23 0 0 0 chr15 93497021 93497044 -7883477 + AT_rich Low_complexity Low_complexity 1 23 0 26 93 0 0 chr15 93497748 93497823 -7882698 + AT_rich Low_complexity Low_complexity 1 75 0 494 169 56 0 chr15 93498205 93498294 -7882227 + MER58B DNA MER1_type 248 341 0 23 68 0 0 chr15 93498347 93498391 -7882130 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr15 93498435 93498463 -7882058 + AT_rich Low_complexity Low_complexity 1 28 0 403 286 50 33 chr15 93498523 93498853 -7881668 - L1 LINE L1 -2134 4012 3679 636 209 8 8 chr15 93499371 93499500 -7881021 + FLAM_A SINE Alu 1 129 -4 1786 150 59 59 chr15 93500266 93500640 -7879881 + THE1C LTR MaLR 2 375 0 9337 144 17 34 chr15 93500640 93502247 -7878274 + THE1C-int LTR MaLR 1 1580 0 1369 146 47 24 chr15 93502249 93502503 -7878018 + THE1C LTR MaLR 3 262 -113 18573 100 7 4 chr15 93502504 93505172 -7875349 + HERVL-A2 LTR ERVL 2979 5654 0 1878 191 36 28 chr15 93505172 93505721 -7874800 + MLT2A2 LTR ERVL 1 554 0 2343 138 5 19 chr15 93505822 93506191 -7874330 + THE1B LTR MaLR 1 364 0 11021 107 14 16 chr15 93506191 93506618 -7873903 + THE1B-int LTR MaLR 1 427 -1153 2103 140 0 3 chr15 93506618 93506926 -7873595 - AluSc SINE Alu 0 309 3 11021 107 14 16 chr15 93506926 93508081 -7872440 + THE1B-int LTR MaLR 427 1580 0 2160 117 47 36 chr15 93508081 93508441 -7872080 + THE1B LTR MaLR 1 364 0 254 282 103 55 chr15 93509001 93509062 -7871459 - MER5A DNA MER1_type -1 188 131 1499 198 128 6 chr15 93509062 93509415 -7871106 - MSTD LTR MaLR 0 396 1 254 282 103 55 chr15 93509415 93509517 -7871004 - MER5A DNA MER1_type -58 131 6 669 36 0 0 chr15 93511287 93511371 -7869150 + (GAA)n Simple_repeat Simple_repeat 1 84 0 342 0 0 0 chr15 93511688 93511726 -7868795 + (TG)n Simple_repeat Simple_repeat 2 39 0 203 0 37 0 chr15 93512159 93512186 -7868335 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 185 96 39 39 chr15 93512223 93512275 -7868246 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 819 246 12 59 chr15 93512607 93512863 -7867658 - MLT1E3 LTR MaLR -1 623 380 228 186 14 71 chr15 93512892 93512962 -7867559 - MLT2C2 LTR ERVL -315 149 84 * 817 221 26 26 chr15 93512909 93513104 -7867417 - MLT1E3 LTR MaLR -455 199 5 476 209 48 48 chr15 93513098 93513304 -7867217 + Zaphod DNA AcHobo 630 835 -3196 * 999 135 7 0 chr15 93513943 93514124 -7866397 + AluSg/x SINE Alu 133 314 0 1965 216 19 14 chr15 93514142 93514559 -7865962 + MSTB1 LTR MaLR 1 419 -13 245 211 40 0 chr15 93516468 93516544 -7863977 - L1ME3A LINE L1 -9 6161 6083 565 259 152 6 chr15 93516580 93516738 -7863783 + MER5A DNA MER1_type 7 187 -2 1284 267 66 53 chr15 93516738 93517359 -7863162 - L1ME3A LINE L1 -115 6055 5427 2362 193 47 28 chr15 93517387 93517968 -7862553 - L1MA8 LINE L1 -25 7226 6635 665 192 46 59 chr15 93517975 93518194 -7862327 + L1 LINE L1 5087 5302 -844 6937 60 5 0 chr15 93518212 93519165 -7861356 + L1PA7 LINE L1 5196 6152 -2 334 83 0 0 chr15 93519210 93519258 -7861263 - L1MA6 LINE L1 -339 5961 5914 9506 188 18 4 chr15 93519262 93520523 -7859998 - L1MA8 LINE L1 -1098 6008 4707 1906 120 30 37 chr15 93520523 93520823 -7859698 - AluSc SINE Alu -11 298 1 9506 188 18 4 chr15 93520823 93521576 -7858945 - L1MA8 LINE L1 -2399 4707 3966 242 220 0 0 chr15 93521579 93521629 -7858892 - L1MA8 LINE L1 -3443 3663 3614 324 161 125 0 chr15 93521651 93521707 -7858814 - AluSc SINE Alu -22 277 215 4615 247 47 37 chr15 93521732 93524498 -7856023 - L1MA8 LINE L1 -3495 3611 7 237 222 0 0 chr15 93524526 93524594 -7855927 - AluJ/monomer SINE Alu 0 306 239 507 232 25 22 chr15 93524594 93524785 -7855736 - L1MC/D LINE L1 -756 5390 5245 1467 221 62 25 chr15 93524785 93525234 -7855287 + MER31B LTR ERV1 1 466 0 507 232 25 22 chr15 93525234 93525278 -7855243 - L1MC/D LINE L1 -901 5245 5203 195 42 0 0 chr15 93525927 93525951 -7854570 + (CA)n Simple_repeat Simple_repeat 2 25 0 275 263 68 60 chr15 93526250 93526383 -7854138 - MIR SINE MIR -60 202 69 205 368 86 7 chr15 93527031 93527183 -7853338 + MIR SINE MIR 25 188 -74 542 113 0 0 chr15 93527728 93527808 -7852713 - MADE1 DNA Mariner 0 80 1 256 377 58 7 chr15 93527820 93527974 -7852547 - L3 LINE CR1 -310 1267 1106 22 56 0 0 chr15 93528314 93528350 -7852171 + AT_rich Low_complexity Low_complexity 1 36 0 207 372 26 0 chr15 93528706 93528819 -7851702 + MIR3 SINE MIR 90 205 -3 412 294 13 20 chr15 93530368 93530521 -7850000 + GA-rich Low_complexity Low_complexity 5 156 0 22 0 0 0 chr15 93531272 93531294 -7849227 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr15 93531689 93531714 -7848807 + AT_rich Low_complexity Low_complexity 1 25 0 727 267 74 77 chr15 93531823 93532576 -7847945 + HAL1 LINE L1 743 1493 -1014 363 121 0 0 chr15 93532576 93532634 -7847887 + (GGA)n Simple_repeat Simple_repeat 1 58 0 306 297 26 26 chr15 93533433 93533588 -7846933 + HAL1 LINE L1 2250 2404 -103 281 327 71 9 chr15 93533727 93533840 -7846681 - MIR SINE MIR -68 140 21 503 211 105 23 chr15 93533931 93534064 -7846457 - MER58B DNA MER1_type 0 341 198 1791 145 150 24 chr15 93534216 93534596 -7845925 - MSTA LTR MaLR 0 428 1 4146 147 19 12 chr15 93534596 93535269 -7845252 - MSTA-int LTR MaLR 0 1580 903 1292 130 19 5 chr15 93535255 93535463 -7845058 - MSTA-int LTR MaLR -1440 211 1 * 1712 180 138 21 chr15 93535463 93535846 -7844675 - MSTA LTR MaLR 0 428 1 252 329 0 0 chr15 93536544 93536617 -7843904 - MLT1K LTR MaLR -514 74 2 2238 122 0 0 chr15 93537426 93537737 -7842784 + AluY SINE Alu 1 311 0 192 77 0 0 chr15 93538123 93538149 -7842372 + (ATTG)n Simple_repeat Simple_repeat 4 29 0 1806 164 0 4 chr15 93538149 93538430 -7842091 - AluJo SINE Alu -32 280 1 520 249 6 11 chr15 93539277 93539454 -7841067 + GA-rich Low_complexity Low_complexity 4 179 0 252 306 90 9 chr15 93539558 93539669 -7840852 + MIR SINE MIR 24 143 -65 309 242 0 61 chr15 93540747 93540846 -7839675 - L1MC4 LINE L1 -1337 6705 6613 777 154 0 0 chr15 93540849 93541082 -7839439 + (TA)n Simple_repeat Simple_repeat 1 233 0 543 159 6 16 chr15 93541111 93541293 -7839228 + (TA)n Simple_repeat Simple_repeat 1 180 0 2009 122 0 0 chr15 93541307 93541577 -7838944 - AluSg SINE Alu -27 283 14 234 295 98 54 chr15 93541640 93541752 -7838769 - MIR SINE MIR -65 197 81 342 226 24 12 chr15 93542477 93542561 -7837960 + MIR SINE MIR 47 131 -131 494 175 19 0 chr15 93542570 93542673 -7837848 + GA-rich Low_complexity Low_complexity 2 106 0 2175 108 0 0 chr15 93542703 93542989 -7837532 + AluSc SINE Alu 1 286 -23 486 169 25 8 chr15 93542994 93543112 -7837409 + GA-rich Low_complexity Low_complexity 4 123 0 202 289 21 52 chr15 93543120 93543217 -7837304 + MIR SINE MIR 163 256 -6 1260 235 14 17 chr15 93543948 93544237 -7836284 + AluJo SINE Alu 1 288 -24 183 42 0 0 chr15 93544283 93544307 -7836214 + (TTG)n Simple_repeat Simple_repeat 3 26 0 1970 149 10 0 chr15 93544309 93544618 -7835903 - AluSx SINE Alu 0 312 1 2122 168 62 27 chr15 93544623 93545027 -7835494 - MSTA LTR MaLR -10 418 1 1378 111 35 65 chr15 93545028 93545232 -7835289 - MSTA-int LTR MaLR -1 1650 1454 2350 93 0 7 chr15 93545232 93545532 -7834989 + AluSx SINE Alu 5 302 -10 1378 111 35 65 chr15 93545532 93545588 -7834933 - MSTA-int LTR MaLR -197 1454 1398 282 104 15 30 chr15 93545613 93545680 -7834841 + (CA)n Simple_repeat Simple_repeat 1 66 0 1175 97 6 6 chr15 93545904 93546069 -7834452 + AluSp SINE Alu 140 304 -9 21 0 0 0 chr15 93546180 93546201 -7834320 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr15 93546690 93546722 -7833799 + AT_rich Low_complexity Low_complexity 1 32 0 257 265 99 50 chr15 93546979 93547160 -7833361 + L2 LINE L2 3081 3270 -43 232 306 0 0 chr15 93547170 93547242 -7833279 - MLT1H LTR MaLR 0 549 478 2701 96 14 143 chr15 93547372 93547923 -7832598 - LTR12 LTR ERV1 -234 480 1 242 128 43 0 chr15 93548075 93548122 -7832399 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 345 305 29 40 chr15 93548189 93548363 -7832158 + L1ME LINE L1 5572 5743 -378 454 254 120 72 chr15 93551054 93551086 -7829435 - L2 LINE L2 -18 3295 3266 2056 69 31 0 chr15 93551086 93551416 -7829105 - AluSq SINE Alu 0 353 16 454 254 120 72 chr15 93551416 93551673 -7828848 - L2 LINE L2 -47 3266 2991 190 292 15 46 chr15 93551732 93551797 -7828724 - MER5B DNA MER1_type -92 86 24 434 285 187 4 chr15 93551825 93552060 -7828461 - L2 LINE L2 -527 2787 2510 250 309 49 0 chr15 93552341 93552422 -7828099 + L2 LINE L2 3186 3270 -2 225 196 0 0 chr15 93552425 93552476 -7828045 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 184 329 26 0 chr15 93553143 93553219 -7827302 + MIR SINE MIR 182 259 -3 490 200 0 25 chr15 93553257 93553377 -7827144 + L1PB4 LINE L1 6040 6156 0 1084 164 6 0 chr15 93553464 93553635 -7826886 - FRAM SINE Alu -10 166 1 1797 127 39 0 chr15 93553746 93554005 -7826516 - AluSq SINE Alu -21 292 24 312 267 123 27 chr15 93554196 93554342 -7826179 - MIR SINE MIR -98 164 5 1956 199 104 8 chr15 93554359 93554832 -7825689 - L1MD1 LINE L1 0 6242 5725 * 3403 185 48 67 chr15 93554827 93555753 -7824768 - L1MDa LINE L1 -4812 1728 821 306 280 25 70 chr15 93556085 93556242 -7824279 + L2 LINE L2 3133 3282 -31 344 217 0 0 chr15 93556254 93556323 -7824198 + MER8 DNA MER2_type 170 238 -1 438 254 194 0 chr15 93556323 93556457 -7824064 - L1MDa LINE L1 -5724 816 657 1411 235 17 11 chr15 93556457 93556814 -7823707 - L1MDa LINE L1 -6146 394 36 1868 155 10 3 chr15 93557414 93557705 -7822816 - AluSx SINE Alu -7 305 13 1292 166 25 113 chr15 93559955 93560281 -7820240 + AluYb8 SINE Alu 1 297 -21 663 51 65 0 chr15 93560283 93560421 -7820100 + (TA)n Simple_repeat Simple_repeat 1 147 0 1167 251 45 88 chr15 93560449 93561381 -7819140 + L1MC4 LINE L1 7165 7995 0 308 269 87 50 chr15 93561648 93561890 -7818631 - L1ME LINE L1 -299 5822 5572 988 254 26 9 chr15 93562168 93562494 -7818027 + L1MC5 LINE L1 6542 6874 -934 556 213 0 16 chr15 93562513 93562640 -7817881 + L1MC5 LINE L1 6748 6872 -1089 1615 206 0 43 chr15 93562787 93563113 -7817408 + AluJo SINE Alu 1 312 0 22 0 0 0 chr15 93564040 93564062 -7816459 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr15 93565103 93565124 -7815397 + AT_rich Low_complexity Low_complexity 1 21 0 1037 138 28 69 chr15 93565400 93565618 -7814903 - Tigger1 DNA MER2_type 0 2418 2210 839 176 0 19 chr15 93565614 93565773 -7814748 - Tigger1 DNA MER2_type -2261 157 2 * 2404 97 0 0 chr15 93566443 93566754 -7813767 - AluSp SINE Alu -2 311 1 532 280 30 0 chr15 93567472 93567604 -7812917 + MIR SINE MIR 50 185 -77 480 18 0 0 chr15 93569969 93570026 -7810495 + (CA)n Simple_repeat Simple_repeat 2 58 0 222 286 22 55 chr15 93570779 93570870 -7809651 - L2 LINE L2 0 3313 3226 193 399 94 20 chr15 93571293 93571739 -7808782 - L2 LINE L2 -10 3303 2825 288 138 0 138 chr15 93571749 93571843 -7808678 - MLT1I LTR MaLR -1 408 328 1891 149 3 20 chr15 93571907 93572209 -7808312 + AluSx SINE Alu 2 298 -14 244 307 27 2 chr15 93572295 93572438 -7808083 - MLT1J2 LTR MaLR -291 156 7 421 114 0 5 chr15 93572501 93572604 -7807917 + MLT1A1 LTR MaLR 1 154 -211 334 179 0 60 chr15 93572603 93572670 -7807851 + AluJ/FRAM SINE Alu 226 288 -14 * 958 228 14 0 chr15 93572705 93572924 -7807597 + MLT1A1 LTR MaLR 144 365 0 358 296 89 103 chr15 93573147 93573177 -7807344 + L1MEd LINE L1 686 715 -5404 2063 132 0 7 chr15 93573177 93573480 -7807041 + AluSc SINE Alu 1 301 -8 358 296 89 103 chr15 93573480 93573874 -7806647 + L1MEd LINE L1 715 1104 -5015 1767 104 20 77 chr15 93573922 93574219 -7806302 + AluSx SINE Alu 32 311 -1 206 200 0 0 chr15 93574789 93574824 -7805697 + (TG)n Simple_repeat Simple_repeat 1 35 0 375 309 79 53 chr15 93575089 93575507 -7805014 + L2 LINE L2 1715 2143 -1171 299 309 24 40 chr15 93576621 93576747 -7803774 + MLT1J LTR MaLR 388 511 0 440 309 42 16 chr15 93576765 93576956 -7803565 + MIR SINE MIR 2 197 -65 340 269 86 16 chr15 93579868 93580054 -7800467 + L1ME LINE L1 5620 5818 -303 193 151 14 41 chr15 93580211 93580284 -7800237 + (TA)n Simple_repeat Simple_repeat 1 71 0 399 311 160 4 chr15 93580846 93581071 -7799450 + MIR SINE MIR 3 262 0 373 232 224 0 chr15 93581896 93582021 -7798500 + MIR SINE MIR 86 238 -24 2145 122 6 19 chr15 93582051 93582363 -7798158 - AluSx SINE Alu -4 308 1 6617 48 3 32 chr15 93583060 93584534 -7795987 + L1PA5 LINE L1 4726 6176 0 207 361 0 34 chr15 93584798 93584917 -7795604 + L2 LINE L2 2420 2534 -780 2129 92 101 24 chr15 93585384 93585722 -7794799 - THE1B LTR MaLR 0 364 1 2990 193 18 3 chr15 93586316 93586928 -7793593 + L1MB5 LINE L1 5547 6167 -7 305 269 67 37 chr15 93589398 93589532 -7790989 - L1MC5 LINE L1 -210 7751 7614 279 352 35 14 chr15 93589613 93589758 -7790763 - MIR SINE MIR -106 156 9 1444 104 86 68 chr15 93590140 93590420 -7790101 + LTR12 LTR ERV1 1 285 -429 280 211 14 0 chr15 93590421 93590492 -7790029 + LTR30 LTR ERV1 553 624 -98 547 144 76 42 chr15 93590492 93590610 -7789911 + LTR12 LTR ERV1 359 480 -234 2234 98 0 22 chr15 93590860 93591175 -7789346 - AluY SINE Alu -3 308 1 231 395 13 29 chr15 93592696 93592934 -7787587 + L2 LINE L2 2416 2649 -665 1251 314 101 46 chr15 93593207 93594220 -7786301 - L2 LINE L2 0 3313 2219 380 317 0 0 chr15 93594224 93594344 -7786177 - L2 LINE L2 -1889 1425 1306 814 49 0 0 chr15 93594344 93594446 -7786075 + L1PA3 LINE L1 6054 6155 0 248 313 25 0 chr15 93594473 93594553 -7785968 - L2 LINE L2 -1972 1342 1261 21 0 0 0 chr15 93594862 93594883 -7785638 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr15 93595125 93595171 -7785350 + AT_rich Low_complexity Low_complexity 1 46 0 24 32 0 0 chr15 93595266 93595297 -7785224 + AT_rich Low_complexity Low_complexity 1 31 0 710 154 26 62 chr15 93595443 93595607 -7784914 + MER53 DNA DNA 2 159 -30 1163 244 68 29 chr15 93595607 93595988 -7784533 + MSTD LTR MaLR 1 396 0 710 154 26 62 chr15 93595988 93596018 -7784503 + MER53 DNA DNA 159 189 0 245 228 72 88 chr15 93596024 93596217 -7784304 - MLT1K LTR MaLR -18 570 381 537 285 64 46 chr15 93598054 93598682 -7781839 + L1ME3A LINE L1 2882 3520 -2626 637 279 52 45 chr15 93598684 93599086 -7781435 + L1ME3A LINE L1 5281 5685 -485 1718 147 75 20 chr15 93599087 93599434 -7781087 + THE1C LTR MaLR 1 366 -9 462 255 115 16 chr15 93599437 93599680 -7780841 + L1ME3A LINE L1 5683 5949 -221 355 283 73 73 chr15 93599747 93599952 -7780569 + L1ME3A LINE L1 5961 6165 -5 257 243 252 48 chr15 93600700 93600906 -7779615 + MIR SINE MIR 10 257 -5 255 353 43 36 chr15 93602103 93602381 -7778140 + L2 LINE L2 1803 2082 -1232 308 360 57 25 chr15 93602454 93602771 -7777750 + L2 LINE L2 2283 2609 -705 1604 116 78 4 chr15 93604876 93605118 -7775403 - AluSx SINE Alu -8 304 45 237 399 30 18 chr15 93605492 93605660 -7774861 + MIR SINE MIR 20 189 -73 1043 173 136 40 chr15 93606401 93606725 -7773796 - MLT1A1 LTR MaLR 0 365 11 296 307 42 57 chr15 93607852 93608064 -7772457 - MIR SINE MIR -3 259 51 264 262 36 12 chr15 93608837 93608921 -7771600 + A-rich Low_complexity Low_complexity 2 87 0 293 344 28 33 chr15 93609649 93609829 -7770692 + MIR SINE MIR 10 188 -74 239 247 35 24 chr15 93610114 93610199 -7770322 - L1ME LINE L1 -301 5820 5735 374 278 48 28 chr15 93611520 93611768 -7768753 - L1ME4a LINE L1 -257 5864 5612 251 269 29 19 chr15 93611818 93611922 -7768599 + (CATATA)n Simple_repeat Simple_repeat 4 108 0 475 323 81 34 chr15 93612024 93612467 -7768054 - L1ME4a LINE L1 -1495 4651 4188 21 36 0 0 chr15 93612468 93612496 -7768025 + AT_rich Low_complexity Low_complexity 1 28 0 245 24 0 0 chr15 93612603 93612644 -7767877 - Alu SINE Alu 0 301 261 301 340 21 0 chr15 93612784 93612972 -7767549 - L1ME4a LINE L1 -2192 3954 3763 315 289 0 11 chr15 93613497 93613587 -7766934 - L1ME4a LINE L1 -2975 3171 3083 34 0 0 0 chr15 93614431 93614465 -7766056 + AT_rich Low_complexity Low_complexity 1 34 0 306 0 0 0 chr15 93614512 93614546 -7765975 + (TG)n Simple_repeat Simple_repeat 1 34 0 195 42 0 0 chr15 93614934 93614958 -7765563 + (T)n Simple_repeat Simple_repeat 1 24 0 486 300 27 13 chr15 93615278 93615428 -7765093 + L2 LINE L2 3160 3311 -2 362 304 78 86 chr15 93615821 93616203 -7764318 + L3 LINE CR1 1191 1569 -8 260 203 51 0 chr15 93616818 93616877 -7763644 - MIR SINE MIR -72 190 129 1428 238 68 72 chr15 93617086 93617628 -7762893 + MLT1F1 LTR MaLR 1 565 -2 323 355 29 0 chr15 93619053 93619191 -7761330 - MIR3 SINE MIR -7 201 60 7373 148 59 7 chr15 93620124 93620767 -7759754 - L1MA1 LINE L1 -2 7719 7111 2636 165 7 0 chr15 93620767 93621192 -7759329 - MSTA LTR MaLR 0 428 1 7373 148 59 7 chr15 93621192 93622952 -7757569 - L1MA1 LINE L1 -610 7111 5189 * 9641 146 106 22 chr15 93622937 93623682 -7756839 - L1MA1 LINE L1 -4416 3149 2468 1861 141 0 85 chr15 93623682 93624023 -7756498 - AluSx SINE Alu 0 312 1 9641 146 106 22 chr15 93624023 93625163 -7755358 - L1MA1 LINE L1 -5097 2468 1106 327 259 35 26 chr15 93625160 93625276 -7755245 - L1MA1 LINE L1 -7430 135 19 * 28 71 0 0 chr15 93625312 93625368 -7755153 + AT_rich Low_complexity Low_complexity 1 56 0 313 241 25 89 chr15 93625478 93625636 -7754885 - MIR SINE MIR -50 212 65 270 268 85 37 chr15 93626031 93626195 -7754326 + MLT1J2 LTR MaLR 51 222 -228 3391 134 21 4 chr15 93626330 93626845 -7753676 - MER1A DNA MER1_type 0 527 4 296 331 18 55 chr15 93626971 93627134 -7753387 - MIR SINE MIR -86 176 20 * 531 295 133 5 chr15 93627079 93627289 -7753232 + MIR SINE MIR 19 255 -7 208 313 15 30 chr15 93627299 93627366 -7753155 - MIR SINE MIR -177 85 20 1400 136 49 24 chr15 93627964 93628251 -7752270 + L1MA8 LINE L1 5997 6290 -1 1994 141 35 46 chr15 93628299 93628368 -7752153 - THE1B LTR MaLR 0 364 296 2309 65 0 88 chr15 93628368 93628709 -7751812 + AluY SINE Alu 1 311 0 1994 141 35 46 chr15 93628709 93629007 -7751514 - THE1B LTR MaLR -68 296 1 868 176 5 54 chr15 93629007 93629211 -7751310 + MER3 DNA MER1_type 15 208 -1 897 176 52 73 chr15 93629228 93629558 -7750963 - MER33 DNA MER1_type -1 323 1 285 342 54 18 chr15 93629566 93629677 -7750844 + L2 LINE L2 3148 3262 -10 1077 211 5 5 chr15 93629865 93630078 -7750443 - MER58A DNA MER1_type -11 213 1 294 274 27 0 chr15 93630264 93630337 -7750184 + L2 LINE L2 3237 3311 -2 2201 171 33 83 chr15 93630440 93630556 -7749965 + L1MC3 LINE L1 7214 7334 -451 1960 116 11 0 chr15 93630556 93630831 -7749690 - AluSx SINE Alu -34 278 1 2201 171 33 83 chr15 93630831 93631316 -7749205 + L1MC3 LINE L1 7334 7785 0 320 278 0 0 chr15 93631906 93631978 -7748543 - MIR SINE MIR -114 148 77 228 204 0 0 chr15 93632238 93632292 -7748229 + L1ME LINE L1 5695 5748 -373 586 262 27 16 chr15 93632321 93632508 -7748013 - MLT1C LTR MaLR 0 467 279 1857 91 0 0 chr15 93632683 93632915 -7747606 - AluSq SINE Alu -58 255 24 3708 208 114 28 chr15 93633666 93635876 -7744645 - L1MB7 LINE L1 0 6682 4263 715 225 16 5 chr15 93635883 93636070 -7744451 - L1MB7 LINE L1 -2501 4143 3955 * 6612 56 1 0 chr15 93636068 93636929 -7743592 - L1PA7 LINE L1 -2 6152 5291 2347 98 0 0 chr15 93637091 93637386 -7743135 - AluSx SINE Alu -17 295 1 3879 216 53 139 chr15 93637512 93639790 -7740731 - L1MB7 LINE L1 -4551 2095 14 315 0 0 0 chr15 93640128 93640163 -7740358 + (TG)n Simple_repeat Simple_repeat 2 36 0 275 322 25 51 chr15 93640376 93640494 -7740027 + MIR SINE MIR 23 137 -125 2158 99 3 3 chr15 93640569 93640852 -7739669 - AluSc SINE Alu -26 283 1 274 110 3 0 chr15 93640858 93640901 -7739620 - Alu SINE Alu -15 285 248 215 324 167 29 chr15 93642362 93642572 -7737949 + MIR SINE MIR 24 262 0 470 243 29 0 chr15 93643559 93643662 -7736859 + MER5A DNA MER1_type 7 112 -77 1441 203 0 35 chr15 93644099 93644389 -7736132 - AluJo SINE Alu -22 290 11 28 29 0 0 chr15 93646793 93646828 -7733693 + AT_rich Low_complexity Low_complexity 1 35 0 1204 187 9 14 chr15 93646864 93647083 -7733438 - MER20 DNA MER1_type 0 219 2 39 22 0 0 chr15 93647165 93647211 -7733310 + AT_rich Low_complexity Low_complexity 1 46 0 217 255 18 0 chr15 93647312 93647379 -7733142 + MIR SINE MIR 74 141 -67 1367 166 54 29 chr15 93651439 93651759 -7728762 - AluJb SINE Alu 0 327 1 1241 198 25 11 chr15 93653256 93653539 -7726982 + L1PA16 LINE L1 5856 6142 -24 1014 77 6 13 chr15 93655449 93655605 -7724916 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 2164 112 0 0 chr15 93655608 93655886 -7724635 - AluSq SINE Alu -35 278 1 256 235 101 59 chr15 93656454 93656573 -7723948 + L2 LINE L2 2188 2311 -1003 25 0 0 0 chr15 93657442 93657467 -7723054 + AT_rich Low_complexity Low_complexity 1 25 0 333 0 0 0 chr15 93657997 93658034 -7722487 + (TC)n Simple_repeat Simple_repeat 1 37 0 2245 96 0 7 chr15 93658579 93658901 -7721620 + AluSc SINE Alu 1 309 0 201 262 0 0 chr15 93659223 93659265 -7721256 + MIR SINE MIR 40 81 -181 192 250 0 0 chr15 93659348 93659392 -7721129 - L2 LINE L2 -43 3270 3227 252 59 0 0 chr15 93660046 93660080 -7720441 + (TG)n Simple_repeat Simple_repeat 2 35 0 30 0 0 0 chr15 93660200 93660230 -7720291 + AT_rich Low_complexity Low_complexity 1 30 0 308 308 97 36 chr15 93661096 93661204 -7719317 + MIR SINE MIR 14 114 -148 321 26 0 0 chr15 93661204 93661242 -7719279 + (CA)n Simple_repeat Simple_repeat 1 38 0 308 308 97 36 chr15 93661242 93661328 -7719193 + MIR SINE MIR 114 220 -42 228 317 49 32 chr15 93662811 93662934 -7717587 + L2 LINE L2 3187 3311 -2 2215 111 3 0 chr15 93663267 93663564 -7716957 - AluSx SINE Alu -14 298 1 316 316 105 23 chr15 93663807 93663940 -7716581 - MIR SINE MIR -80 182 39 415 282 53 41 chr15 93665549 93665719 -7714802 + MER5B DNA MER1_type 6 177 -1 200 194 0 0 chr15 93667598 93667634 -7712887 + (CA)n Simple_repeat Simple_repeat 1 36 0 192 125 0 0 chr15 93668674 93668706 -7711815 + (TC)n Simple_repeat Simple_repeat 2 33 0 342 0 0 0 chr15 93669955 93669993 -7710528 + (CA)n Simple_repeat Simple_repeat 2 39 0 189 0 0 0 chr15 93673269 93673290 -7707231 + (T)n Simple_repeat Simple_repeat 1 21 0 246 128 0 0 chr15 93673550 93673589 -7706932 + (T)n Simple_repeat Simple_repeat 1 39 0 315 0 0 0 chr15 93675492 93675527 -7704994 + (CA)n Simple_repeat Simple_repeat 2 36 0 204 40 0 0 chr15 93675991 93676016 -7704505 + (GGA)n Simple_repeat Simple_repeat 2 26 0 211 205 0 0 chr15 93676750 93676789 -7703732 + GA-rich Low_complexity Low_complexity 1 39 0 2175 121 0 0 chr15 93677624 93677922 -7702599 - AluSx SINE Alu -14 298 1 543 193 15 0 chr15 93677924 93678059 -7702462 + MER96B DNA MER1_type? 255 391 -26 249 230 14 27 chr15 93678873 93678947 -7701574 + GA-rich Low_complexity Low_complexity 2 74 0 620 158 24 182 chr15 93680811 93681058 -7699463 + MER20 DNA MER1_type 12 219 0 235 286 92 20 chr15 93681059 93681157 -7699364 + MIR3 SINE MIR 12 116 -92 21 0 0 0 chr15 93681389 93681410 -7699111 + AT_rich Low_complexity Low_complexity 1 21 0 396 0 0 0 chr15 93681410 93681454 -7699067 + (TA)n Simple_repeat Simple_repeat 2 45 0 344 286 112 33 chr15 93681584 93681787 -7698734 + MIR SINE MIR 16 233 -29 314 102 41 0 chr15 93682098 93682147 -7698374 + MLT1G1 LTR MaLR 1 51 -544 23 0 0 0 chr15 93682184 93682207 -7698314 + AT_rich Low_complexity Low_complexity 1 23 0 315 235 35 0 chr15 93682217 93682302 -7698219 - L1ME4a LINE L1 -1 6120 6033 21 0 0 0 chr15 93682659 93682680 -7697841 + AT_rich Low_complexity Low_complexity 1 21 0 2376 104 7 0 chr15 93682847 93683155 -7697366 - AluSx SINE Alu -2 310 1 2248 73 0 14 chr15 93683544 93683833 -7696688 + AluY SINE Alu 18 302 -9 1142 169 14 2 chr15 93684657 93684887 -7695634 + L1MA4 LINE L1 5817 6053 -101 274 179 45 0 chr15 93684878 93684945 -7695576 + L1MB4 LINE L1 6110 6179 -1 * 2041 128 0 3 chr15 93684968 93685266 -7695255 + AluSg SINE Alu 1 297 -13 205 161 0 0 chr15 93688052 93688083 -7692438 + polypyrimidine Low_complexity Low_complexity 2 32 0 892 214 58 44 chr15 93689167 93689373 -7691148 + AluJo SINE Alu 75 283 -29 306 106 0 0 chr15 93689378 93689425 -7691096 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2550 172 7 26 chr15 93689490 93689883 -7690638 + L1MB3 LINE L1 5353 5785 -398 1120 219 108 15 chr15 93689883 93690217 -7690304 - MLT1A1 LTR MaLR 0 365 1 2550 172 7 26 chr15 93690217 93690374 -7690147 + L1MB3 LINE L1 5785 5943 -240 447 312 64 51 chr15 93690713 93691008 -7689513 + L1MB8 LINE L1 5305 5603 -756 215 224 0 15 chr15 93691021 93691088 -7689433 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 330 26 0 0 chr15 93691184 93691223 -7689298 + (TG)n Simple_repeat Simple_repeat 2 40 0 198 71 0 0 chr15 93691514 93691542 -7688979 + (CA)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr15 93691803 93691825 -7688696 + AT_rich Low_complexity Low_complexity 1 22 0 2383 100 0 0 chr15 93692410 93692719 -7687802 - AluSc SINE Alu 0 309 1 440 324 91 50 chr15 93692719 93693211 -7687310 - HAL1b LINE L1 -679 669 158 954 166 122 8 chr15 93693640 93694053 -7686468 - MLT1D LTR MaLR 0 505 27 2520 117 56 10 chr15 93694386 93694795 -7685726 + MSTA LTR MaLR 1 428 0 2242 86 7 4 chr15 93694803 93695083 -7685438 - AluSc SINE Alu -13 296 16 1763 158 0 48 chr15 93696889 93697199 -7683322 - AluJo SINE Alu -2 310 16 263 333 114 8 chr15 93698432 93698564 -7681957 - L2 LINE L2 0 3272 3127 1950 126 7 0 chr15 93698574 93698845 -7681676 + AluSx SINE Alu 24 296 -16 1492 187 81 44 chr15 93698873 93699328 -7681193 + L1MB8 LINE L1 5705 6176 -2 531 324 173 24 chr15 93699343 93700143 -7680378 - L2 LINE L2 -135 3178 2260 290 348 161 6 chr15 93700143 93700459 -7680062 - L2 LINE L2 -1238 2076 1712 620 231 48 27 chr15 93700467 93700653 -7679868 - MLT1J LTR MaLR -2 509 320 450 288 34 0 chr15 93700726 93700872 -7679649 - MLT1J LTR MaLR -358 153 3 264 313 125 67 chr15 93700926 93701342 -7679179 - L2 LINE L2 -1639 1675 1236 1011 166 0 12 chr15 93701359 93701557 -7678964 - AluSp SINE Alu 0 313 118 274 343 21 14 chr15 93701589 93701732 -7678789 - L2 LINE L2 -2135 1179 1036 185 299 39 13 chr15 93702043 93702120 -7678401 - L3 LINE CR1 -424 1153 1075 4213 174 35 29 chr15 93702691 93703016 -7677505 - L1MB1 LINE L1 -1 6167 5845 3613 210 67 16 chr15 93703016 93703835 -7676686 - MER21B LTR ERV1 -2 861 1 4213 174 35 29 chr15 93703835 93704830 -7675691 - L1MB1 LINE L1 -323 5845 4821 189 0 0 0 chr15 93704830 93704851 -7675670 + (CTATT)n Simple_repeat Simple_repeat 5 25 0 4213 174 35 29 chr15 93704851 93704866 -7675655 - L1MB1 LINE L1 -1347 4821 4808 2353 96 7 0 chr15 93705277 93705580 -7674941 + AluSp SINE Alu 1 305 -8 2083 133 0 3 chr15 93705639 93705932 -7674589 + AluSx SINE Alu 1 292 -20 236 206 28 9 chr15 93705933 93706040 -7674481 + (TA)n Simple_repeat Simple_repeat 2 110 0 23 33 0 0 chr15 93708205 93708235 -7672286 + AT_rich Low_complexity Low_complexity 1 30 0 277 263 76 85 chr15 93708634 93708752 -7671769 + MER5B DNA MER1_type 61 177 -1 187 120 120 40 chr15 93708890 93708940 -7671581 + L2 LINE L2 2428 2481 -833 264 30 0 0 chr15 93710603 93710636 -7669885 + (TA)n Simple_repeat Simple_repeat 2 34 0 355 325 46 21 chr15 93711542 93711822 -7668699 - L1ME LINE L1 -303 5818 5532 607 125 19 0 chr15 93711840 93711944 -7668577 - L1MA9 LINE L1 0 6312 6207 1631 44 5 0 chr15 93714616 93714820 -7665701 + L1PA3 LINE L1 5951 6155 0 29 0 0 0 chr15 93714820 93714849 -7665672 + AT_rich Low_complexity Low_complexity 1 29 0 1096 277 106 40 chr15 93715145 93715160 -7665361 - HAL1 LINE L1 -79 2428 2415 2005 133 43 3 chr15 93715160 93715460 -7665061 - AluSx SINE Alu 0 312 1 1096 277 106 40 chr15 93715460 93716375 -7664146 - HAL1 LINE L1 -92 2415 1436 572 249 195 58 chr15 93716476 93717154 -7663367 - HAL1 LINE L1 -1398 1109 339 2381 93 0 0 chr15 93717156 93717456 -7663065 - AluSc SINE Alu -9 300 1 4404 125 19 103 chr15 93717482 93718403 -7662118 - L1PA10 LINE L1 0 6168 5326 307 271 16 33 chr15 93718484 93718606 -7661915 - HAL1 LINE L1 -2270 237 118 2200 116 3 0 chr15 93718911 93719205 -7661316 - AluSx SINE Alu -17 295 1 180 0 0 0 chr15 93720064 93720084 -7660437 + (T)n Simple_repeat Simple_repeat 1 20 0 288 189 294 46 chr15 93720340 93720493 -7660028 + MIR SINE MIR 36 226 -36 2111 127 6 16 chr15 93721241 93721556 -7658965 - AluSx SINE Alu 0 312 1 228 295 107 33 chr15 93722215 93722337 -7658184 - L2 LINE L2 -4 3268 3138 * 308 275 28 18 chr15 93722313 93722422 -7658099 + L2 LINE L2 3198 3307 -6 202 158 26 0 chr15 93722601 93722639 -7657882 + MIR SINE MIR 73 111 -151 441 0 0 0 chr15 93722842 93722891 -7657630 + (CA)n Simple_repeat Simple_repeat 2 50 0 1978 118 3 17 chr15 93723099 93723430 -7657091 - AluY SINE Alu 0 327 1 421 271 20 16 chr15 93723887 93724039 -7656482 + L1MC/D LINE L1 5615 5768 -591 2723 45 0 0 chr15 93724420 93724731 -7655790 + AluY SINE Alu 1 311 0 767 244 17 13 chr15 93725317 93725646 -7654875 + AluY SINE Alu 2 331 0 1122 302 79 63 chr15 93725875 93725936 -7654585 - L1M4 LINE L1 -1069 5077 5018 1633 222 12 3 chr15 93725936 93726279 -7654242 - MER7A DNA MER2_type -1 345 2 1122 302 79 63 chr15 93726279 93727273 -7653248 - L1M4 LINE L1 -1128 5018 4006 266 315 22 0 chr15 93727436 93727525 -7652996 + MIR SINE MIR 102 192 -70 2202 102 0 7 chr15 93727528 93727822 -7652699 + AluSq SINE Alu 5 296 -17 21 36 0 0 chr15 93727822 93727850 -7652671 + AT_rich Low_complexity Low_complexity 1 28 0 444 287 119 99 chr15 93727918 93728713 -7651808 - L1M4 LINE L1 -2233 3913 3103 252 122 0 0 chr15 93729008 93729049 -7651472 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 1643 224 42 48 chr15 93730260 93730761 -7649760 + MLT1D LTR MaLR 1 498 -7 800 244 117 30 chr15 93731290 93731687 -7648834 + MER57B LTR ERV1 1 424 -10 344 337 94 11 chr15 93734109 93734290 -7646231 + MIR SINE MIR 6 201 -61 212 250 143 0 chr15 93734311 93734367 -7646154 + MIR SINE MIR 62 125 -137 563 170 134 29 chr15 93734368 93734539 -7645982 + MER53 DNA DNA 1 189 0 31 0 0 0 chr15 93734618 93734649 -7645872 + AT_rich Low_complexity Low_complexity 1 31 0 2069 107 0 0 chr15 93735480 93735779 -7644742 + AluSx SINE Alu 14 312 0 234 0 0 0 chr15 93738057 93738083 -7642438 + (CA)n Simple_repeat Simple_repeat 1 26 0 271 262 0 0 chr15 93738341 93738402 -7642119 + L2 LINE L2 3252 3312 -1 309 278 0 56 chr15 93739579 93739687 -7640834 + L1MC4 LINE L1 6615 6716 -1326 292 265 15 0 chr15 93739701 93739837 -7640684 + (TA)n Simple_repeat Simple_repeat 1 138 0 1265 225 69 45 chr15 93739837 93739884 -7640637 + MER74B LTR ERVL 75 119 -503 1860 172 0 16 chr15 93739884 93740198 -7640323 + AluJo SINE Alu 1 309 -3 1265 225 69 45 chr15 93740198 93740612 -7639909 + MER74B LTR ERVL 119 547 -75 260 216 27 14 chr15 93740551 93740625 -7639896 - MER88 LTR ERVL -311 153 79 * 510 294 74 32 chr15 93741212 93741412 -7639109 + L1ME3A LINE L1 5499 5689 -481 713 223 0 0 chr15 93741412 93741542 -7638979 + FLAM_A SINE Alu 1 130 -3 510 294 74 32 chr15 93741542 93741776 -7638745 + L1ME3A LINE L1 5689 5951 -219 1641 174 17 13 chr15 93742005 93742304 -7638217 + AluJb SINE Alu 9 308 -4 2072 158 91 24 chr15 93742825 93743275 -7637246 + LTR12 LTR ERV1 1 480 -234 238 277 103 65 chr15 93743520 93743675 -7636846 - MIR SINE MIR -67 195 35 2126 133 36 25 chr15 93745070 93745430 -7635091 - THE1B LTR MaLR 0 364 1 3096 139 18 0 chr15 93746218 93746706 -7633815 + LOR1a LTR ERV1 1 497 0 224 291 77 59 chr15 93748883 93749081 -7631440 - MIR SINE MIR -18 244 47 186 43 0 0 chr15 93749532 93749555 -7630966 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 390 57 0 0 chr15 93750026 93750079 -7630442 + (CA)n Simple_repeat Simple_repeat 2 54 0 306 164 0 0 chr15 93751825 93751880 -7628641 + (CA)n Simple_repeat Simple_repeat 2 56 0 392 189 28 0 chr15 93751935 93752078 -7628443 + (TA)n Simple_repeat Simple_repeat 2 148 0 461 178 30 20 chr15 93754721 93754822 -7625699 - AluY SINE Alu -3 308 207 31 0 0 0 chr15 93755137 93755168 -7625353 + AT_rich Low_complexity Low_complexity 1 31 0 845 226 29 19 chr15 93755193 93755481 -7625040 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr15 93755756 93755778 -7624743 + AT_rich Low_complexity Low_complexity 1 22 0 774 227 24 29 chr15 93756128 93756335 -7624186 + MIR SINE MIR 51 256 -6 197 247 269 11 chr15 93756852 93756945 -7623576 + MIR SINE MIR 146 262 0 1063 227 87 6 chr15 93757289 93757633 -7622888 - Charlie4a DNA MER1_type -132 376 5 26 50 0 0 chr15 93759515 93759555 -7620966 + AT_rich Low_complexity Low_complexity 1 40 0 1508 145 86 37 chr15 93759751 93760040 -7620481 + AluJo SINE Alu 1 302 0 24 0 0 0 chr15 93760095 93760119 -7620402 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr15 93760174 93760198 -7620323 + (TTTAG)n Simple_repeat Simple_repeat 2 25 0 254 288 0 108 chr15 93760319 93760430 -7620091 + L2 LINE L2 3155 3253 -19 336 277 65 0 chr15 93761577 93761761 -7618760 + L1MC2 LINE L1 4314 4509 -1637 488 347 0 0 chr15 93761861 93762011 -7618510 - MIR SINE MIR -108 154 5 285 397 94 0 chr15 93762222 93762509 -7618012 + L2 LINE L2 582 895 -2419 1895 156 92 6 chr15 93762864 93763223 -7617298 + MLT1B LTR MaLR 1 390 0 683 84 0 0 chr15 93763511 93763606 -7616915 - AluSg/x SINE Alu -5 305 211 323 252 61 35 chr15 93763785 93763900 -7616621 + MER94 DNA DNA 10 127 -7 5600 90 13 15 chr15 93764260 93765211 -7615310 + L1PA12 LINE L1 5106 6055 -113 609 221 55 166 chr15 93765555 93765845 -7614676 - MIR SINE MIR 0 262 5 1987 139 32 32 chr15 93765888 93766263 -7614258 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr15 93767084 93767107 -7613414 + AT_rich Low_complexity Low_complexity 1 23 0 5797 200 24 7 chr15 93768230 93769907 -7610614 + L1MC2 LINE L1 4627 6336 -8 1602 163 50 0 chr15 93770157 93770440 -7610081 + AluJb SINE Alu 3 299 -13 1443 281 95 26 chr15 93770738 93771315 -7609206 - MLT1E2 LTR MaLR -9 617 1 542 231 109 35 chr15 93771458 93771769 -7608752 - L1ME4a LINE L1 -56 6065 5732 21 0 0 0 chr15 93772289 93772310 -7608211 + AT_rich Low_complexity Low_complexity 1 21 0 632 240 20 7 chr15 93772678 93772824 -7607697 - MER77 LTR ERV1 -11 594 447 275 345 131 12 chr15 93772928 93773096 -7607425 - MER77 LTR ERV1 -141 464 277 374 224 0 26 chr15 93773130 93773206 -7607315 - MER77 LTR ERV1 -478 127 54 1704 248 46 18 chr15 93773290 93773808 -7606713 + L1ME2 LINE L1 2463 3002 -3144 2101 84 4 0 chr15 93773808 93774069 -7606452 + AluSp SINE Alu 26 287 -26 1704 248 46 18 chr15 93774069 93774163 -7606358 + L1ME2 LINE L1 3002 3092 -3054 1504 228 61 59 chr15 93774160 93774291 -7606230 + L1ME2 LINE L1 4789 4918 -1244 * 1633 186 29 4 chr15 93774291 93774570 -7605951 - AluJb SINE Alu -26 286 1 1504 228 61 59 chr15 93774570 93775667 -7604854 + L1ME2 LINE L1 4918 5813 -349 1530 197 56 31 chr15 93775667 93776023 -7604498 + MLT1A1 LTR MaLR 1 365 0 1504 228 61 59 chr15 93776023 93776191 -7604330 + L1ME2 LINE L1 5813 5979 -183 1260 147 0 0 chr15 93776201 93776424 -7604097 - L1P3 LINE L1 -4558 1903 1690 1921 57 0 12 chr15 93776424 93776668 -7603853 + L1PA7 LINE L1 5906 6146 -8 451 292 60 12 chr15 93776704 93776872 -7603649 + L1ME2 LINE L1 5988 6163 -1 1511 205 3 3 chr15 93776880 93777168 -7603353 + AluJo SINE Alu 1 288 -24 28 0 0 0 chr15 93777168 93777196 -7603325 + AT_rich Low_complexity Low_complexity 1 28 0 1087 235 50 24 chr15 93777203 93777543 -7602978 + L1MD3 LINE L1 6768 7116 -879 368 201 11 55 chr15 93777547 93777642 -7602879 + MLT1F1 LTR MaLR 5 123 -432 335 247 11 11 chr15 93777642 93777735 -7602786 + L1MD3 LINE L1 7411 7503 -492 24 32 0 0 chr15 93777904 93777935 -7602586 + AT_rich Low_complexity Low_complexity 1 31 0 300 347 0 16 chr15 93778080 93778201 -7602320 - L1MEc LINE L1 -4576 1820 1702 2016 128 10 0 chr15 93778265 93778555 -7601966 + AluSx SINE Alu 1 293 -19 249 344 6 6 chr15 93778573 93778756 -7601765 - HAL1 LINE L1 -897 1610 1428 483 323 81 51 chr15 93778802 93779344 -7601177 - L1MEc LINE L1 -4869 1336 792 275 384 47 37 chr15 93779355 93779471 -7601050 + MLT1K LTR MaLR 147 260 -328 207 0 0 0 chr15 93779471 93779494 -7601027 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 275 384 47 37 chr15 93779494 93779786 -7600735 + MLT1K LTR MaLR 260 559 -29 2232 123 0 0 chr15 93781721 93782031 -7598490 - AluSx SINE Alu -2 310 1 708 286 96 9 chr15 93783044 93783264 -7597257 - MIR SINE MIR -21 241 3 192 232 178 70 chr15 93783543 93783728 -7596793 - L2 LINE L2 -1359 1955 1751 405 132 15 0 chr15 93783793 93783861 -7596660 + AluS SINE Alu 4 72 -237 1963 102 0 4 chr15 93783962 93784228 -7596293 - AluSg SINE Alu -45 265 1 235 304 107 9 chr15 93785444 93785556 -7594965 + MIR SINE MIR 134 256 -6 203 335 40 59 chr15 93786223 93786375 -7594146 - MIR SINE MIR -94 168 20 188 303 109 25 chr15 93786517 93786636 -7593885 + MIR SINE MIR 107 235 -27 2935 202 16 24 chr15 93786658 93787162 -7593359 + MLT2B3 LTR ERVL 1 502 -52 650 24 24 0 chr15 93787162 93787245 -7593276 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 2935 202 16 24 chr15 93787245 93787290 -7593231 + MLT2B3 LTR ERVL 502 546 -8 326 304 130 6 chr15 93788653 93788814 -7591707 - MIR SINE MIR -3 259 79 730 178 0 0 chr15 93790010 93790128 -7590393 + FLAM_C SINE Alu 1 118 -15 186 43 0 0 chr15 93790135 93790158 -7590363 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 208 286 32 0 chr15 93790556 93790619 -7589902 + MIR SINE MIR 94 158 -104 737 163 57 0 chr15 93790730 93790853 -7589668 - FLAM_C SINE Alu -3 130 1 374 286 90 17 chr15 93791766 93792000 -7588521 + L1ME LINE L1 5568 5818 -303 2142 106 7 14 chr15 93794227 93794520 -7586001 + AluSq SINE Alu 1 291 -22 514 316 75 63 chr15 93795547 93795895 -7584626 - L2 LINE L2 -70 3243 2892 238 369 70 11 chr15 93796872 93797059 -7583462 + MIR SINE MIR 9 206 -56 348 286 83 16 chr15 93797911 93798066 -7582455 + MIR SINE MIR 3 159 -58 232 305 43 43 chr15 93798327 93798491 -7582030 + LTR67 LTR ERVL 392 555 -2 591 302 90 9 chr15 93798500 93798722 -7581799 - MIR SINE MIR -8 254 15 201 239 134 0 chr15 93799170 93799237 -7581284 + MIR3 SINE MIR 116 191 -17 342 302 48 40 chr15 93799407 93799533 -7580988 + L2 LINE L2 3146 3272 0 449 333 82 35 chr15 93799775 93800262 -7580259 - L2 LINE L2 0 3313 2804 207 69 0 0 chr15 93800268 93800297 -7580224 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 21 36 0 0 chr15 93801295 93801323 -7579198 + AT_rich Low_complexity Low_complexity 1 28 0 834 273 87 56 chr15 93801998 93802390 -7578131 - MLT1J LTR MaLR -101 410 7 306 235 10 71 chr15 93802397 93802495 -7578026 - MIR SINE MIR -108 154 63 1024 266 63 34 chr15 93802769 93803152 -7577369 + MER69 DNA AcHobo 1 394 -2132 810 258 109 21 chr15 93803153 93803575 -7576946 + MER69 DNA AcHobo 1797 2255 -271 417 214 156 0 chr15 93803608 93803781 -7576740 + MER69 DNA AcHobo 2322 2521 -5 1831 129 44 103 chr15 93804111 93804498 -7576023 - THE1B LTR MaLR 0 364 1 11050 95 12 21 chr15 93804498 93806092 -7574429 - THE1B-int LTR MaLR 0 1580 1 2130 125 48 23 chr15 93806092 93806445 -7574076 - THE1B LTR MaLR 0 364 3 4267 169 23 1 chr15 93806531 93807301 -7573220 + L1MC1 LINE L1 5413 6199 -134 333 108 0 4 chr15 93807305 93807362 -7573159 - MLT2A2 LTR ERVL -7 446 396 269 250 11 0 chr15 93807395 93807487 -7573034 + (TA)n Simple_repeat Simple_repeat 2 94 0 288 0 0 0 chr15 93807556 93807588 -7572933 + (TG)n Simple_repeat Simple_repeat 1 32 0 2970 92 13 0 chr15 93807588 93807977 -7572544 - MLT2A2 LTR ERVL -59 394 1 2224 231 94 30 chr15 93808106 93808872 -7571649 - L1ME2 LINE L1 -7 6952 6138 2090 246 69 85 chr15 93808878 93809348 -7571173 - L1ME2 LINE L1 -918 6023 5547 1665 181 33 13 chr15 93809348 93809652 -7570869 - AluJb SINE Alu 0 312 3 2090 246 69 85 chr15 93809652 93810693 -7569828 - L1ME2 LINE L1 -1394 5547 4536 180 77 0 0 chr15 93810845 93810871 -7569650 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 333 0 0 0 chr15 93810891 93810928 -7569593 + (TA)n Simple_repeat Simple_repeat 2 38 0 279 0 0 0 chr15 93810927 93810958 -7569563 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 504 198 117 136 chr15 93811002 93811275 -7569246 + MLT1B LTR MaLR 4 271 -119 962 210 35 0 chr15 93811278 93811478 -7569043 + L1M2 LINE L1 5585 5791 -521 225 344 0 0 chr15 93811478 93811539 -7568982 - MER2 DNA MER2_type 0 345 285 1083 192 10 10 chr15 93811574 93811782 -7568739 - MER2 DNA MER2_type -136 209 2 333 0 0 0 chr15 93811829 93811866 -7568655 + (CA)n Simple_repeat Simple_repeat 2 38 0 1490 162 37 25 chr15 93811870 93812197 -7568324 + L1MA9 LINE L1 5798 6128 -184 719 120 0 0 chr15 93812197 93812297 -7568224 + AluS SINE Alu 1 100 -212 1835 128 0 4 chr15 93812297 93812547 -7567974 - AluSx SINE Alu -43 269 21 848 280 45 47 chr15 93812549 93813121 -7567400 - L1ME2 LINE L1 -3985 3137 2567 229 212 26 88 chr15 93813525 93813638 -7566883 - L1ME2 LINE L1 -6216 207 102 1081 58 0 53 chr15 93813725 93813914 -7566607 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 283 294 110 41 chr15 93816253 93816471 -7564050 - L2 LINE L2 -1448 1866 1634 320 244 134 17 chr15 93816484 93816603 -7563918 - L1M LINE L1 -764 5398 5266 21 0 0 0 chr15 93816720 93816741 -7563780 + AT_rich Low_complexity Low_complexity 1 21 0 425 292 60 16 chr15 93816816 93817001 -7563520 - MIR SINE MIR 0 262 70 242 289 124 33 chr15 93817474 93817595 -7562926 + MIR SINE MIR 131 262 0 293 395 0 0 chr15 93817661 93817775 -7562746 - L3 LINE CR1 -119 1458 1345 21 0 0 0 chr15 93817836 93817857 -7562664 + AT_rich Low_complexity Low_complexity 1 21 0 260 293 85 0 chr15 93818063 93818145 -7562376 - L3 LINE CR1 -677 900 812 288 0 0 0 chr15 93818571 93818603 -7561918 + (TTCC)n Simple_repeat Simple_repeat 3 34 0 208 310 44 62 chr15 93819174 93819287 -7561234 + MER5B DNA MER1_type 1 111 -67 26 30 0 0 chr15 93819314 93819347 -7561174 + AT_rich Low_complexity Low_complexity 1 33 0 180 0 0 0 chr15 93819451 93819471 -7561050 + (T)n Simple_repeat Simple_repeat 1 20 0 415 288 186 28 chr15 93819579 93819794 -7560727 + MIR SINE MIR 14 262 0 * 1059 350 78 39 chr15 93819791 93820450 -7560071 + L2 LINE L2 675 1397 -1917 1977 130 0 29 chr15 93820450 93820757 -7559764 + AluSx SINE Alu 2 299 -13 1059 350 78 39 chr15 93820757 93821211 -7559310 + L2 LINE L2 1397 1832 -1482 446 366 52 13 chr15 93821267 93821499 -7559022 - MIR SINE MIR -16 246 6 267 290 9 56 chr15 93822340 93822447 -7558074 + MIR SINE MIR 84 185 -77 238 261 14 0 chr15 93822462 93822531 -7557990 + (CATA)n Simple_repeat Simple_repeat 1 70 0 399 113 0 0 chr15 93823093 93823155 -7557366 + (TC)n Simple_repeat Simple_repeat 2 63 0 1166 159 0 0 chr15 93823501 93823677 -7556844 + AluSg/x SINE Alu 137 312 0 225 0 0 0 chr15 93825547 93825572 -7554949 + (TA)n Simple_repeat Simple_repeat 2 26 0 1873 163 58 0 chr15 93828590 93828916 -7551605 + MER7A DNA MER2_type 1 343 -3 370 222 70 134 chr15 93829742 93829799 -7550722 + MIR SINE MIR 28 87 -175 2288 104 0 9 chr15 93829799 93830115 -7550406 - AluSq SINE Alu 0 313 1 370 222 70 134 chr15 93830115 93830228 -7550293 + MIR SINE MIR 87 187 -75 707 286 22 35 chr15 93830250 93830481 -7550040 + MIR SINE MIR 24 251 -11 318 80 0 0 chr15 93830707 93830757 -7549764 + (TA)n Simple_repeat Simple_repeat 1 50 0 202 338 82 69 chr15 93831059 93831290 -7549231 + L2 LINE L2 2950 3183 -89 228 292 46 62 chr15 93831479 93831609 -7548912 - MIR3 SINE MIR -34 174 47 207 0 0 0 chr15 93831755 93831778 -7548743 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 263 278 87 40 chr15 93832136 93832435 -7548086 + L1ME4a LINE L1 5709 6021 -100 279 161 0 0 chr15 93832447 93832503 -7548018 + L1ME4a LINE L1 6062 6117 -4 276 379 57 16 chr15 93832717 93832841 -7547680 + MIR SINE MIR 20 148 -114 185 310 20 40 chr15 93832926 93833026 -7547495 + L2 LINE L2 2973 3070 -202 1131 227 54 36 chr15 93835291 93835626 -7544895 + MER58B DNA MER1_type 1 341 0 266 157 157 79 chr15 93836807 93836852 -7543669 - L1ME4a LINE L1 -2 6119 6079 2358 93 3 0 chr15 93836852 93837163 -7543358 + AluSp SINE Alu 1 312 -1 266 157 157 79 chr15 93837163 93837257 -7543264 - L1ME4a LINE L1 -42 6079 5969 2116 125 0 22 chr15 93837331 93837650 -7542871 - AluSx SINE Alu 0 312 1 234 219 0 31 chr15 93837921 93837985 -7542536 + A-rich Low_complexity Low_complexity 4 65 0 236 297 48 91 chr15 93839408 93839573 -7540948 + MIR3 SINE MIR 43 200 -8 237 270 10 70 chr15 93840162 93840262 -7540259 + L2 LINE L2 2889 2982 -290 230 329 0 0 chr15 93840563 93840642 -7539879 - MLT1H LTR MaLR -16 533 455 615 281 80 52 chr15 93840668 93840956 -7539565 - MLT1H LTR MaLR -225 324 29 23 0 0 0 chr15 93843100 93843123 -7537398 + AT_rich Low_complexity Low_complexity 1 23 0 823 131 0 36 chr15 93844141 93844278 -7536243 + FLAM_C SINE Alu 2 133 0 1104 150 50 54 chr15 93844338 93844493 -7536028 + L1MC1 LINE L1 6095 6250 -83 2166 125 0 0 chr15 93844493 93844788 -7535733 + AluSx SINE Alu 1 295 -17 1104 150 50 54 chr15 93844788 93844872 -7535649 + L1MC1 LINE L1 6250 6333 0 605 267 115 24 chr15 93844961 93845249 -7535272 + MER46C DNA MER2_type 22 335 -3 348 193 28 9 chr15 93845627 93845736 -7534785 + GA-rich Low_complexity Low_complexity 2 112 0 888 167 56 30 chr15 93846788 93846986 -7533535 - L1MC1 LINE L1 -5 6328 6126 285 276 143 0 chr15 93846994 93847092 -7533429 - MIR SINE MIR -49 213 102 2379 92 0 0 chr15 93849715 93850019 -7530502 - AluY SINE Alu -7 304 1 686 326 57 0 chr15 93850424 93850654 -7529867 + MIR SINE MIR 2 244 -18 383 262 97 77 chr15 93851546 93851794 -7528727 + MIR SINE MIR 10 262 0 669 214 44 58 chr15 93852064 93852270 -7528251 + MER3 DNA MER1_type 7 209 0 191 289 0 0 chr15 93852271 93852316 -7528205 - L2 LINE L2 -310 2962 2918 203 365 0 0 chr15 93852436 93852510 -7528011 - L2 LINE L2 -556 2758 2685 213 39 0 0 chr15 93853819 93853845 -7526676 + (A)n Simple_repeat Simple_repeat 1 26 0 689 286 57 5 chr15 93853888 93854098 -7526423 - MIR SINE MIR 0 262 42 21 57 0 0 chr15 93856337 93856372 -7524149 + AT_rich Low_complexity Low_complexity 1 35 0 201 74 0 0 chr15 93859359 93859386 -7521135 + (T)n Simple_repeat Simple_repeat 1 27 0 216 67 0 0 chr15 93859709 93859739 -7520782 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 36 0 0 chr15 93859964 93859992 -7520529 + AT_rich Low_complexity Low_complexity 1 28 0 244 319 145 14 chr15 93861321 93861459 -7519062 + MIR SINE MIR 6 161 -101 370 312 21 0 chr15 93861465 93861558 -7518963 - MIR SINE MIR -153 109 15 233 287 118 22 chr15 93862426 93862562 -7517959 + L2 LINE L2 3148 3296 -17 618 195 2 8 chr15 93863121 93863263 -7517258 + L1MA8 LINE L1 6002 6153 -147 324 318 24 0 chr15 93864502 93864628 -7515893 + MIR SINE MIR 78 206 -56 357 304 124 74 chr15 93864710 93865240 -7515281 + L3 LINE CR1 584 1140 -437 2583 253 76 34 chr15 93866198 93868950 -7511571 + L1M4 LINE L1 14 3067 -3577 1082 209 32 0 chr15 93869047 93869300 -7511221 - L1M4 LINE L1 -3288 2858 2598 21 57 0 0 chr15 93869315 93869350 -7511171 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr15 93869918 93869940 -7510581 + AT_rich Low_complexity Low_complexity 1 22 0 232 207 17 0 chr15 93870513 93870571 -7509950 + (TTA)n Simple_repeat Simple_repeat 2 60 0 1987 117 3 3 chr15 93870656 93870947 -7509574 - AluSx SINE Alu -21 291 1 1934 112 4 0 chr15 93874117 93874375 -7506146 + AluSq SINE Alu 1 259 -54 447 193 7 28 chr15 93874377 93874393 -7506128 + (TA)n Simple_repeat Simple_repeat 2 17 -126 246 32 0 0 chr15 93874393 93874424 -7506097 + (GA)n Simple_repeat Simple_repeat 2 32 0 447 193 7 28 chr15 93874424 93874552 -7505969 + (TA)n Simple_repeat Simple_repeat 17 143 0 278 348 116 0 chr15 93874764 93874876 -7505645 - MIR SINE MIR -136 126 2 26 50 0 0 chr15 93875905 93875945 -7504576 + AT_rich Low_complexity Low_complexity 1 40 0 718 216 6 6 chr15 93876064 93876226 -7504295 + FAM SINE Alu 1 49 0 250 311 48 0 chr15 93876580 93876683 -7503838 + MER45C DNA AcHobo 502 609 -344 364 164 0 0 chr15 93876689 93876744 -7503777 + MER45C DNA AcHobo 899 953 0 319 177 19 29 chr15 93877095 93877202 -7503319 + MSTA LTR MaLR 14 116 -316 2233 150 48 10 chr15 93877494 93877887 -7502634 - MSTB LTR MaLR 0 426 19 183 156 0 0 chr15 93879008 93879040 -7501481 + T-rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr15 93880804 93880825 -7499696 + AT_rich Low_complexity Low_complexity 1 21 0 243 240 0 0 chr15 93881395 93881445 -7499076 + GA-rich Low_complexity Low_complexity 1 50 0 207 0 0 0 chr15 93882713 93882736 -7497785 + (A)n Simple_repeat Simple_repeat 1 23 0 320 279 94 35 chr15 93884306 93884490 -7496031 + L1MC/D LINE L1 5270 5461 -2336 245 169 40 16 chr15 93884652 93884776 -7495745 + (TA)n Simple_repeat Simple_repeat 1 127 0 268 229 19 19 chr15 93885000 93885105 -7495416 + (TA)n Simple_repeat Simple_repeat 1 105 0 189 0 0 0 chr15 93886371 93886392 -7494129 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 43 0 0 0 chr15 93888132 93888175 -7492346 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr15 93888207 93888229 -7492292 + AT_rich Low_complexity Low_complexity 1 22 0 374 326 73 28 chr15 93888413 93888591 -7491930 + MIR SINE MIR 6 191 -71 2162 118 0 3 chr15 93889179 93889468 -7491053 + AluSg SINE Alu 1 288 -22 23 33 0 0 chr15 93889468 93889498 -7491023 + AT_rich Low_complexity Low_complexity 1 30 0 185 287 130 37 chr15 93890418 93890526 -7489995 + MIR SINE MIR 72 189 -73 601 124 57 10 chr15 93890573 93890856 -7489665 + (TCTA)n Simple_repeat Simple_repeat 1 296 0 2329 58 3 29 chr15 93890899 93891208 -7489313 + AluY SINE Alu 1 301 -10 2873 219 50 45 chr15 93891343 93892249 -7488272 - L1ME1 LINE L1 -44 6122 5210 358 106 15 15 chr15 93892391 93892457 -7488064 + (TCTCC)n Simple_repeat Simple_repeat 3 68 0 4737 225 29 3 chr15 93892457 93893454 -7487067 + HERVL74 LTR ERVL 2307 3329 -2356 926 176 6 18 chr15 93893459 93893624 -7486897 + HERVL74 LTR ERVL 3491 3653 -2032 906 189 0 0 chr15 93893616 93893775 -7486746 + HERVL74 LTR ERVL 3913 4071 -1614 * 1464 236 55 62 chr15 93893753 93894448 -7486073 + HERVL74 LTR ERVL 4578 5251 -434 394 223 9 54 chr15 93894454 93894566 -7485955 + HERVL74 LTR ERVL 5393 5499 -186 1469 140 0 5 chr15 93894668 93894889 -7485632 - AluY SINE Alu -91 220 1 1004 320 95 14 chr15 93894898 93895382 -7485139 - L1MEc LINE L1 -5822 574 52 22 0 0 0 chr15 93895574 93895596 -7484925 + AT_rich Low_complexity Low_complexity 1 22 0 215 157 0 20 chr15 93895596 93895647 -7484874 + (TTTAA)n Simple_repeat Simple_repeat 1 50 0 341 271 41 0 chr15 93896045 93896167 -7484354 + L1ME4a LINE L1 5756 5882 -239 33 43 0 0 chr15 93896348 93896395 -7484126 + AT_rich Low_complexity Low_complexity 1 47 0 249 57 0 0 chr15 93896662 93896697 -7483824 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 183 139 0 0 chr15 93896697 93896733 -7483788 + (TATATG)n Simple_repeat Simple_repeat 4 39 0 333 0 0 0 chr15 93896735 93896772 -7483749 + (GA)n Simple_repeat Simple_repeat 2 38 0 22 70 0 0 chr15 93896993 93897036 -7483485 + AT_rich Low_complexity Low_complexity 1 43 0 2240 108 0 0 chr15 93897524 93897821 -7482700 - AluSc SINE Alu -12 297 1 29 28 0 0 chr15 93899782 93899818 -7480703 + AT_rich Low_complexity Low_complexity 1 36 0 343 262 118 63 chr15 93899932 93900298 -7480223 - L1ME4a LINE L1 -180 5941 5556 22 0 0 0 chr15 93900711 93900733 -7479788 + AT_rich Low_complexity Low_complexity 1 22 0 436 283 30 0 chr15 93901160 93901259 -7479262 - MER5A DNA MER1_type -16 173 72 378 206 14 0 chr15 93901334 93901407 -7479114 - MER5A DNA MER1_type -112 77 4 26 30 0 0 chr15 93902680 93902713 -7477808 + AT_rich Low_complexity Low_complexity 1 33 0 616 236 56 6 chr15 93904309 93904470 -7476051 + L1MB8 LINE L1 6005 6173 -5 350 271 256 0 chr15 93904676 93904805 -7475716 - MER5A DNA MER1_type 0 189 28 229 351 146 32 chr15 93904891 93905076 -7475445 + MIR SINE MIR 41 246 -16 24 32 0 0 chr15 93905416 93905447 -7475074 + AT_rich Low_complexity Low_complexity 1 31 0 558 132 8 23 chr15 93905842 93905971 -7474550 + (TTC)n Simple_repeat Simple_repeat 3 129 0 2045 128 7 0 chr15 93906050 93906340 -7474181 + AluSp SINE Alu 1 292 -21 2138 113 56 31 chr15 93906361 93906716 -7473805 - THE1B LTR MaLR 0 364 1 11210 106 8 2 chr15 93906720 93908286 -7472235 - THE1B-int LTR MaLR -4 1576 1 2074 126 50 31 chr15 93908286 93908643 -7471878 - THE1B LTR MaLR 0 364 1 1207 237 59 26 chr15 93908648 93908996 -7471525 - MLT1A1 LTR MaLR 0 365 1 191 345 70 29 chr15 93909510 93909681 -7470840 + L2 LINE L2 1912 2089 -1225 2091 110 17 7 chr15 93909940 93910239 -7470282 - AluSg SINE Alu -8 302 1 828 319 42 22 chr15 93910453 93910814 -7469707 - MLT1I LTR MaLR -22 387 20 302 317 108 25 chr15 93911234 93911354 -7469167 + L2 LINE L2 3116 3245 -27 27 0 0 0 chr15 93911429 93911456 -7469065 + AT_rich Low_complexity Low_complexity 1 27 0 1734 121 32 0 chr15 93911464 93911712 -7468809 - AluSq SINE Alu -56 257 2 21 0 0 0 chr15 93911873 93911894 -7468627 + AT_rich Low_complexity Low_complexity 1 21 0 186 189 0 0 chr15 93912029 93912066 -7468455 + (TA)n Simple_repeat Simple_repeat 2 38 0 225 89 0 0 chr15 93913078 93913123 -7467398 + LTR66 LTR ERVL 394 438 -172 225 89 0 0 chr15 93913083 93913128 -7467393 - LTR66 LTR ERVL -172 438 394 204 328 15 0 chr15 93913128 93913195 -7467326 + (CA)n Simple_repeat Simple_repeat 2 69 0 4037 192 98 27 chr15 93914605 93915605 -7464916 + L1MC3 LINE L1 6707 7777 -8 249 0 31 0 chr15 93916203 93916235 -7464286 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 2079 137 0 0 chr15 93916235 93916520 -7464001 - AluSq SINE Alu -1 316 1 1660 173 66 6 chr15 93917876 93918194 -7462327 - MER1B DNA MER1_type 0 337 1 226 250 50 17 chr15 93918375 93918435 -7462086 + L2 LINE L2 3244 3305 -8 2938 93 47 0 chr15 93918972 93919402 -7461119 + L1PA10 LINE L1 5709 6158 -10 646 181 137 64 chr15 93919473 93919677 -7460844 + MER20 DNA MER1_type 1 219 0 387 135 11 22 chr15 93920203 93920292 -7460229 + GA-rich Low_complexity Low_complexity 1 88 0 298 344 177 0 chr15 93920995 93921187 -7459334 + L3 LINE CR1 1231 1456 -121 1966 150 40 33 chr15 93921372 93921919 -7458602 - MLT2A2 LTR ERVL 0 554 1 2183 88 10 7 chr15 93922227 93922524 -7457997 + AluSx SINE Alu 3 300 -12 345 219 9 67 chr15 93923192 93923297 -7457224 + MIR SINE MIR 94 192 -70 342 67 0 0 chr15 93923599 93923644 -7456877 + (TG)n Simple_repeat Simple_repeat 2 46 0 201 294 0 0 chr15 93924706 93924757 -7455764 - L3b LINE CR1 0 1583 1533 503 276 154 0 chr15 93924767 93924923 -7455598 + MER5A DNA MER1_type 10 189 0 231 240 160 53 chr15 93924994 93925069 -7455452 - MER5B DNA MER1_type -74 104 22 717 198 93 6 chr15 93925102 93925274 -7455247 + MER5A DNA MER1_type 1 187 -2 588 196 5 142 chr15 93925339 93925543 -7454978 - MER3 DNA MER1_type -80 129 1 215 245 0 0 chr15 93925571 93925624 -7454897 + (TAA)n Simple_repeat Simple_repeat 3 55 0 321 360 73 7 chr15 93927415 93927551 -7452970 - MIR3 SINE MIR -48 160 16 2158 143 0 0 chr15 93927837 93928145 -7452376 - AluSx SINE Alu -4 308 1 407 320 47 12 chr15 93928277 93928449 -7452072 - MIR SINE MIR -14 248 71 1776 278 128 38 chr15 93929016 93929787 -7450734 + L2 LINE L2 1712 2552 -762 774 267 52 0 chr15 93929788 93929979 -7450542 + MER8 DNA MER2_type 2 202 -37 2010 133 0 0 chr15 93930220 93930539 -7449982 - AluSq SINE Alu 0 319 1 198 0 0 0 chr15 93931432 93931454 -7449067 + (ATTG)n Simple_repeat Simple_repeat 2 23 0 245 135 19 0 chr15 93931484 93931536 -7448985 + GA-rich Low_complexity Low_complexity 1 53 0 24 67 0 0 chr15 93933543 93933588 -7446933 + AT_rich Low_complexity Low_complexity 1 45 0 201 215 15 15 chr15 93933674 93933739 -7446782 + (TA)n Simple_repeat Simple_repeat 2 66 0 764 204 0 0 chr15 93933908 93934040 -7446481 + AluJo SINE Alu 1 132 -170 279 227 0 0 chr15 93934040 93934106 -7446415 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 227 259 74 0 chr15 93934112 93934193 -7446328 - L1MC4 LINE L1 -1340 6702 6616 336 83 0 0 chr15 93934193 93934241 -7446280 + (TG)n Simple_repeat Simple_repeat 2 49 0 735 216 60 12 chr15 93934245 93934412 -7446109 + AluJo SINE Alu 137 311 -1 26 50 0 0 chr15 93934688 93934728 -7445793 + AT_rich Low_complexity Low_complexity 1 40 0 549 278 30 6 chr15 93936007 93936176 -7444345 - MIR SINE MIR -29 233 61 24 0 0 0 chr15 93936423 93936447 -7444074 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr15 93936893 93936925 -7443596 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr15 93937374 93937397 -7443124 + AT_rich Low_complexity Low_complexity 1 23 0 259 83 0 0 chr15 93939342 93939378 -7441143 - MADE1 DNA Mariner 0 80 45 251 211 19 0 chr15 93939457 93939509 -7441012 - L2 LINE L2 0 3313 3261 186 344 0 0 chr15 93940426 93940487 -7440034 - L2 LINE L2 -2 3270 3210 401 224 0 0 chr15 93941099 93941175 -7439346 + Tigger7 DNA MER2_type 1 76 -263 1393 206 0 0 chr15 93941176 93941448 -7439073 - Tigger7 DNA MER2_type -204 346 75 * 1519 139 21 80 chr15 93941446 93941785 -7438736 + Tigger7 DNA MER2_type 2243 2561 -26 263 113 19 0 chr15 93941794 93941847 -7438674 + (TA)n Simple_repeat Simple_repeat 1 54 0 242 187 112 0 chr15 93941863 93941970 -7438551 + (TATAA)n Simple_repeat Simple_repeat 2 120 0 237 139 0 0 chr15 93942471 93942514 -7438007 + (TA)n Simple_repeat Simple_repeat 2 44 0 241 195 23 16 chr15 93942956 93943084 -7437437 + (CA)n Simple_repeat Simple_repeat 1 129 0 986 152 0 0 chr15 93943199 93943350 -7437171 - FRAM SINE Alu -3 173 23 182 88 0 29 chr15 93943687 93943721 -7436800 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 597 302 56 56 chr15 93943763 93944157 -7436364 + L1ME4a LINE L1 5527 5920 -201 222 360 85 20 chr15 93944871 93945024 -7435497 + MIR SINE MIR 5 167 -95 1165 154 0 0 chr15 93945947 93946122 -7434399 - AluSg/x SINE Alu -6 304 130 850 197 0 21 chr15 93946836 93947142 -7433379 - MLT1A1 LTR MaLR -2 363 1 41 36 0 0 chr15 93947486 93947541 -7432980 + AT_rich Low_complexity Low_complexity 1 55 0 243 0 0 0 chr15 93947605 93947632 -7432889 + (A)n Simple_repeat Simple_repeat 1 27 0 262 333 24 0 chr15 93948473 93948557 -7431964 + L2 LINE L2 3187 3272 0 1822 162 3 0 chr15 93949118 93949437 -7431084 + AluSx SINE Alu 6 325 0 285 261 43 11 chr15 93950577 93950669 -7429852 - MLT1I LTR MaLR 0 409 315 377 226 29 20 chr15 93950840 93950942 -7429579 - MLT1I LTR MaLR -257 152 50 193 273 0 0 chr15 93951645 93951689 -7428832 + L2 LINE L2 3262 3305 -8 194 302 63 0 chr15 93953728 93953791 -7426730 - L2 LINE L2 -15 3298 3232 536 0 16 0 chr15 93954278 93954342 -7426179 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 235 268 24 0 chr15 93954372 93954454 -7426067 - L1MC4 LINE L1 -1339 6703 6620 292 232 144 16 chr15 93956641 93956766 -7423755 - MIR SINE MIR -12 250 110 234 179 0 0 chr15 93956823 93956879 -7423642 + T-rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr15 93956900 93956921 -7423600 + AT_rich Low_complexity Low_complexity 1 21 0 569 191 37 48 chr15 93957196 93957384 -7423137 + MER53 DNA DNA 1 186 -3 207 250 119 24 chr15 93957465 93957549 -7422972 + MIR SINE MIR 122 213 -49 467 268 147 15 chr15 93958147 93958345 -7422176 - MIR SINE MIR -32 230 7 231 184 0 0 chr15 93959382 93959420 -7421101 - Alu SINE Alu -263 39 2 215 264 52 115 chr15 93960976 93961150 -7419371 + L2 LINE L2 2875 3037 -235 11516 128 8 37 chr15 93962399 93964406 -7416115 - Tigger1 DNA MER2_type -11 2407 460 207 0 0 0 chr15 93967630 93967653 -7412868 + (CA)n Simple_repeat Simple_repeat 2 24 0 259 311 55 55 chr15 93968491 93968784 -7411737 - L1ME4a LINE L1 -213 5908 5616 240 143 20 20 chr15 93969200 93969249 -7411272 - MIR SINE MIR 0 262 214 702 276 62 13 chr15 93970729 93970954 -7409567 + MIR SINE MIR 2 237 -25 399 56 0 0 chr15 93971636 93971690 -7408831 + (TG)n Simple_repeat Simple_repeat 1 54 0 3025 122 4 11 chr15 93973378 93973854 -7406667 + L1PA13 LINE L1 5687 6159 -4 384 123 0 0 chr15 93973885 93973958 -7406563 + (TA)n Simple_repeat Simple_repeat 1 73 0 214 163 0 41 chr15 93974122 93974171 -7406350 + T-rich Low_complexity Low_complexity 2 48 0 311 324 132 9 chr15 93974243 93974456 -7406065 - MIR SINE MIR -3 259 21 271 276 60 15 chr15 93974609 93974743 -7405778 + L1MC4 LINE L1 7759 7898 -144 321 240 0 0 chr15 93975424 93975520 -7405001 + C-rich Low_complexity Low_complexity 2 97 0 276 149 0 21 chr15 93975616 93975663 -7404858 - L2 LINE L2 -9 3263 3218 254 306 18 9 chr15 93976679 93976790 -7403731 + MER113 DNA MER1_type? 291 402 -119 477 254 66 0 chr15 93980330 93980452 -7400069 + MER103 DNA DNA 4 133 -33 214 282 47 12 chr15 93980719 93980804 -7399717 + MIR SINE MIR 86 173 -89 275 344 46 15 chr15 93980836 93980967 -7399554 - L2 LINE L2 -172 3100 2966 255 286 89 60 chr15 93982133 93982301 -7398220 + MIR SINE MIR 90 262 0 345 226 0 0 chr15 93985676 93985760 -7394761 + (TA)n Simple_repeat Simple_repeat 2 85 0 1515 273 128 25 chr15 93985795 93986304 -7394217 - MLT1E LTR MaLR -3 590 30 379 208 176 8 chr15 93986528 93986653 -7393868 + MLT1J1 LTR MaLR 22 167 -279 257 260 73 31 chr15 93986680 93986776 -7393745 + MLT1J2 LTR MaLR 267 366 -84 1970 125 0 17 chr15 93986776 93987089 -7393432 + AluSx SINE Alu 1 308 0 182 342 31 68 chr15 93987719 93987880 -7392641 - MIR SINE MIR -99 163 9 723 228 14 0 chr15 93988419 93988564 -7391957 - Tigger1 DNA MER2_type -2271 147 1 23 33 0 0 chr15 93988612 93988642 -7391879 + AT_rich Low_complexity Low_complexity 1 30 0 426 20 0 0 chr15 93988735 93988786 -7391735 + (CA)n Simple_repeat Simple_repeat 2 52 0 225 224 91 63 chr15 93989111 93989254 -7391267 + L1MEd LINE L1 48 194 -5925 1346 44 0 0 chr15 93989747 93989905 -7390616 - AluY SINE Alu -14 297 140 590 264 87 23 chr15 93990124 93990434 -7390087 + L1MEd LINE L1 896 1225 -4894 2061 159 83 24 chr15 93991316 93991725 -7388796 - Tigger2a DNA MER2_type 0 434 2 21 0 0 0 chr15 93991777 93991798 -7388723 + AT_rich Low_complexity Low_complexity 1 21 0 1215 116 74 81 chr15 93993122 93993183 -7387338 - Tigger3(Golem) DNA MER2_type -2 3026 2966 1780 107 4 0 chr15 93993183 93993417 -7387104 - AluSx SINE Alu -77 235 1 1215 116 74 81 chr15 93993417 93993613 -7386908 - Tigger3(Golem) DNA MER2_type -62 2966 2771 400 141 0 0 chr15 93993639 93993703 -7386818 - Tigger3(Golem) DNA MER2_type -2908 121 58 382 375 35 0 chr15 93993881 93994025 -7386496 + L2 LINE L2 3102 3250 -22 1402 250 15 0 chr15 93995496 93995832 -7384689 - MER58B DNA MER1_type 0 341 1 220 204 0 0 chr15 93996284 93996328 -7384193 + GA-rich Low_complexity Low_complexity 2 45 0 203 140 20 0 chr15 93998821 93998871 -7381650 + (TA)n Simple_repeat Simple_repeat 1 51 0 21 0 0 0 chr15 93998876 93998897 -7381624 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr15 93998925 93998951 -7381570 + AT_rich Low_complexity Low_complexity 1 26 0 2229 122 0 0 chr15 93999705 94000017 -7380504 - AluSx SINE Alu 0 312 1 183 306 0 0 chr15 94000408 94000457 -7380064 - MIR SINE MIR -68 140 92 356 278 40 32 chr15 94000859 94000985 -7379536 + L2 LINE L2 3146 3272 0 309 344 90 0 chr15 94001236 94001358 -7379163 + MER5B DNA MER1_type 1 133 -45 183 100 0 0 chr15 94001358 94001388 -7379133 + (A)n Simple_repeat Simple_repeat 1 30 0 275 250 33 33 chr15 94002000 94002092 -7378429 + MLT1I LTR MaLR 318 409 0 884 139 72 0 chr15 94002235 94002415 -7378106 + L1MA7 LINE L1 6099 6291 0 2156 134 3 0 chr15 94002992 94003291 -7377230 + AluSq SINE Alu 1 300 -13 407 284 131 17 chr15 94003425 94003601 -7376920 - MIR SINE MIR -16 246 51 293 331 48 21 chr15 94003602 94003747 -7376774 - MER67A LTR ERV1 0 543 395 246 228 38 51 chr15 94003897 94003976 -7376545 - MER67B LTR ERV1 -538 123 46 489 191 198 8 chr15 94006939 94007065 -7373456 + MER5A DNA MER1_type 34 183 -6 210 372 22 33 chr15 94008287 94008470 -7372051 + MIR3 SINE MIR 15 195 -13 361 338 124 4 chr15 94010754 94010979 -7369542 - MIR SINE MIR -9 253 2 22 0 0 0 chr15 94011031 94011053 -7369468 + AT_rich Low_complexity Low_complexity 1 22 0 6652 122 26 11 chr15 94011057 94012270 -7368251 - L1MA3 LINE L1 -8 6297 5069 2317 182 5 7 chr15 94012577 94013022 -7367499 - L1MB3 LINE L1 -3 6180 5737 408 271 105 70 chr15 94014013 94014242 -7366279 + MIR SINE MIR 20 256 -6 225 224 0 0 chr15 94014931 94014989 -7365532 + (TA)n Simple_repeat Simple_repeat 1 58 0 573 303 91 72 chr15 94015080 94015541 -7364980 + L3 LINE CR1 454 928 -649 2165 80 6 54 chr15 94015541 94015855 -7364666 + AluY SINE Alu 1 299 -12 573 303 91 72 chr15 94015855 94015922 -7364599 + L3 LINE CR1 928 992 -585 284 243 67 91 chr15 94016114 94016324 -7364197 + HAL1b LINE L1 345 549 -799 2380 44 7 3 chr15 94016551 94016849 -7363672 - AluY SINE Alu -12 299 1 23 33 0 0 chr15 94017926 94017956 -7362565 + AT_rich Low_complexity Low_complexity 1 30 0 924 170 13 0 chr15 94017956 94018115 -7362406 - FRAM SINE Alu -16 160 1 203 269 269 10 chr15 94018854 94018958 -7361563 + L2 LINE L2 3136 3266 -6 193 308 92 25 chr15 94019555 94019675 -7360846 + MIR SINE MIR 16 143 -65 813 272 9 9 chr15 94020872 94021104 -7359417 - MLT1A2 LTR MaLR -3 371 140 2184 122 0 19 chr15 94021105 94021417 -7359104 + AluSq SINE Alu 1 306 -7 279 129 0 113 chr15 94021422 94021484 -7359037 - MLT1A2 LTR MaLR -319 55 1 222 306 24 59 chr15 94022144 94022229 -7358292 - L2 LINE L2 -2 3311 3230 246 62 0 0 chr15 94022975 94023007 -7357514 + (CA)n Simple_repeat Simple_repeat 1 32 0 181 344 126 50 chr15 94023518 94024114 -7356407 + L2 LINE L2 2014 2654 -660 254 286 26 0 chr15 94024394 94024471 -7356050 - Charlie8 DNA MER1_type -2338 79 1 240 35 0 0 chr15 94024912 94024941 -7355580 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 23 54 0 0 chr15 94026728 94026765 -7353756 + AT_rich Low_complexity Low_complexity 1 37 0 340 218 40 32 chr15 94027023 94027147 -7353374 - L1ME4a LINE L1 -18 6103 5979 30 0 0 0 chr15 94027402 94027432 -7353089 + AT_rich Low_complexity Low_complexity 1 30 0 204 211 0 0 chr15 94027517 94027555 -7352966 + (CATA)n Simple_repeat Simple_repeat 2 39 0 1563 201 0 26 chr15 94028568 94028881 -7351640 + AluJo SINE Alu 1 305 -7 248 272 206 70 chr15 94029375 94029603 -7350918 + MIR SINE MIR 2 260 -2 2198 104 10 7 chr15 94029726 94030025 -7350496 + AluSq SINE Alu 1 300 -13 865 169 0 7 chr15 94030117 94030259 -7350262 + AluJo SINE Alu 65 205 -107 211 296 111 0 chr15 94030274 94030355 -7350166 + MIR SINE MIR 119 208 -54 329 236 65 16 chr15 94031335 94031458 -7349063 - MIR SINE MIR -15 247 119 222 350 23 110 chr15 94031523 94031832 -7348689 + L2 LINE L2 2976 3257 -15 448 240 25 85 chr15 94032163 94032363 -7348158 + MLT1J LTR MaLR 9 196 -315 2337 101 0 0 chr15 94034557 94034853 -7345668 + AluSq SINE Alu 1 296 -17 361 198 162 18 chr15 94035051 94035162 -7345359 - MIR SINE MIR -106 156 30 26 30 0 0 chr15 94035315 94035348 -7345173 + AT_rich Low_complexity Low_complexity 1 33 0 460 189 0 0 chr15 94035842 94035932 -7344589 + MER94 DNA DNA 6 95 -39 312 351 97 52 chr15 94035957 94036339 -7344182 - L2 LINE L2 -511 2803 2405 461 299 65 52 chr15 94036384 94036708 -7343813 + L2 LINE L2 2981 3308 -5 2243 75 4 0 chr15 94040312 94040590 -7339931 + AluSc SINE Alu 8 286 -23 278 231 46 19 chr15 94042193 94042301 -7338220 - MER103 DNA DNA -53 113 3 193 319 69 26 chr15 94042864 94042980 -7337541 - MIR SINE MIR -69 139 19 296 149 50 174 chr15 94045029 94045150 -7335371 - MER5A DNA MER1_type -80 109 4 195 186 0 0 chr15 94046115 94046158 -7334363 + A-rich Low_complexity Low_complexity 1 43 0 405 0 0 0 chr15 94047207 94047252 -7333269 + (CA)n Simple_repeat Simple_repeat 1 45 0 297 306 90 35 chr15 94049772 94049916 -7330605 - L2 LINE L2 -886 2428 2277 273 252 156 74 chr15 94050100 94050235 -7330286 + L2 LINE L2 3156 3301 -12 2236 115 0 6 chr15 94050561 94050874 -7329647 + AluSx SINE Alu 1 311 -1 278 248 55 18 chr15 94051290 94051399 -7329122 - L1ME LINE L1 -271 5850 5738 471 290 27 16 chr15 94051405 94051591 -7328930 + LTR67 LTR ERVL 4 191 -366 263 267 129 0 chr15 94051781 94051882 -7328639 + LTR67 LTR ERVL 415 528 -29 207 0 0 0 chr15 94051882 94051905 -7328616 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 331 252 91 77 chr15 94052197 94052349 -7328172 - L1ME LINE L1 -749 5397 5238 1798 160 3 61 chr15 94052349 94052662 -7327859 - AluJb SINE Alu -17 295 1 331 252 91 77 chr15 94052662 94052795 -7327726 - L1ME LINE L1 -908 5238 5108 346 171 26 13 chr15 94053268 94053344 -7327177 + MER116 DNA Mariner 4 80 0 5647 107 8 0 chr15 94054849 94055845 -7324676 - L1PB1 LINE L1 -3 6148 5143 606 142 94 0 chr15 94056205 94056311 -7324210 - AluJb SINE Alu -21 291 176 2224 84 11 0 chr15 94056552 94056837 -7323684 - AluSg1 SINE Alu -21 288 1 195 42 0 0 chr15 94057191 94057215 -7323306 + (A)n Simple_repeat Simple_repeat 1 24 0 2211 88 14 0 chr15 94057383 94057667 -7322854 + AluSp SINE Alu 1 288 -25 22 0 0 0 chr15 94058626 94058648 -7321873 + AT_rich Low_complexity Low_complexity 1 22 0 428 277 123 73 chr15 94058651 94059164 -7321357 + L1ME LINE L1 5160 5699 -471 2114 113 0 7 chr15 94059189 94059481 -7321040 + AluSx SINE Alu 18 307 -5 1016 191 69 20 chr15 94059500 94059782 -7320739 + L1MC2 LINE L1 6027 6326 -18 1361 204 100 0 chr15 94059782 94060052 -7320469 - AluJb SINE Alu -15 297 1 1016 191 69 20 chr15 94060052 94060072 -7320449 + L1MC2 LINE L1 6326 6344 0 1914 199 39 15 chr15 94060331 94060743 -7319778 + MSTB LTR MaLR 1 422 -4 1951 121 61 10 chr15 94060756 94061053 -7319468 + AluSx SINE Alu 1 312 0 23 68 0 0 chr15 94062633 94062677 -7317844 + AT_rich Low_complexity Low_complexity 1 44 0 285 319 0 35 chr15 94063248 94063389 -7317132 + A-rich Low_complexity Low_complexity 4 139 0 233 344 5 5 chr15 94064748 94064937 -7315584 - L1ME LINE L1 -680 5490 5302 680 122 81 0 chr15 94064938 94065061 -7315460 - L1PB3 LINE L1 -3 6151 6019 2341 76 3 3 chr15 94065072 94065361 -7315160 - AluSc SINE Alu -8 301 13 636 256 163 30 chr15 94065618 94065954 -7314567 + L1M4 LINE L1 3011 3380 -2766 25 0 0 0 chr15 94066602 94066627 -7313894 + AT_rich Low_complexity Low_complexity 1 25 0 228 263 50 0 chr15 94067069 94067149 -7313372 + L1ME LINE L1 5843 5926 -195 300 305 52 78 chr15 94067993 94068147 -7312374 + L2 LINE L2 3119 3268 -4 22 0 0 0 chr15 94068962 94068984 -7311537 + AT_rich Low_complexity Low_complexity 1 22 0 187 262 24 95 chr15 94068987 94069071 -7311450 - L2 LINE L2 -1 3271 3194 451 284 0 0 chr15 94069135 94069251 -7311270 - MER117 DNA MER1_type -80 117 2 955 199 11 6 chr15 94070564 94070745 -7309776 + MER5A DNA MER1_type 2 183 -6 1593 189 3 17 chr15 94070916 94071212 -7309309 + AluJo SINE Alu 9 300 -12 319 321 128 28 chr15 94072170 94072419 -7308102 + L1ME LINE L1 224 497 -5573 276 291 9 86 chr15 94072454 94072664 -7307857 + L1ME LINE L1 466 659 -5424 3814 143 40 1 chr15 94072721 94073372 -7307149 - Tigger1 DNA MER2_type -6 2412 1737 994 288 86 21 chr15 94073381 94075488 -7305033 - L1MCc LINE L1 -4581 2541 25 401 139 0 70 chr15 94075923 94076009 -7304512 - MADE1 DNA Mariner 0 80 1 24 53 0 0 chr15 94076293 94076331 -7304190 + AT_rich Low_complexity Low_complexity 1 38 0 193 360 67 13 chr15 94076796 94076946 -7303575 + L2 LINE L2 2702 2859 -455 442 303 158 0 chr15 94077672 94077824 -7302697 + MER5A DNA MER1_type 13 188 -1 21 0 0 0 chr15 94078982 94079003 -7301518 + AT_rich Low_complexity Low_complexity 1 21 0 2124 124 9 18 chr15 94079227 94079558 -7300963 - THE1B LTR MaLR -36 328 1 11099 97 19 13 chr15 94079558 94081129 -7299392 - THE1B-int LTR MaLR 0 1580 1 2284 137 8 16 chr15 94081129 94081494 -7299027 - THE1B LTR MaLR 0 364 3 1501 206 0 33 chr15 94081727 94082028 -7298493 + AluJo SINE Alu 1 291 -21 1466 256 79 34 chr15 94082476 94083420 -7297101 - L1MCa LINE L1 -3364 3200 2217 1789 256 55 18 chr15 94083431 94084205 -7296316 - L1MCa LINE L1 -4595 2150 1160 1933 231 41 31 chr15 94084255 94084861 -7295660 - L1MCa LINE L1 -4852 1193 582 1600 283 12 42 chr15 94084997 94085567 -7294954 - L1MCa LINE L1 -5491 554 2 2276 114 0 0 chr15 94085605 94085903 -7294618 + AluSx SINE Alu 1 298 -14 29 47 0 0 chr15 94086471 94086514 -7294007 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr15 94087660 94087683 -7292838 + AT_rich Low_complexity Low_complexity 1 23 0 1231 133 85 0 chr15 94088123 94088334 -7292187 - MER30 DNA MER1_type -1 229 1 376 284 152 10 chr15 94090398 94090602 -7289919 - MIR SINE MIR -28 234 2 236 306 51 20 chr15 94092139 94092237 -7288284 - MIR SINE MIR -121 141 41 23 33 0 0 chr15 94093440 94093470 -7287051 + AT_rich Low_complexity Low_complexity 1 30 0 233 296 22 89 chr15 94093747 94093882 -7286639 - L2 LINE L2 -8 3264 3139 89 34 0 0 chr15 94094168 94094285 -7286236 + AT_rich Low_complexity Low_complexity 1 117 0 223 415 43 12 chr15 94094627 94094791 -7285730 + L2 LINE L2 3096 3264 -8 225 0 0 0 chr15 94095478 94095503 -7285018 + (TA)n Simple_repeat Simple_repeat 2 26 0 476 147 43 0 chr15 94096403 94096519 -7284002 + GA-rich Low_complexity Low_complexity 3 123 0 22 0 0 0 chr15 94097189 94097211 -7283310 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr15 94097690 94097719 -7282802 + AT_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr15 94097773 94097803 -7282718 + AT_rich Low_complexity Low_complexity 1 30 0 241 240 20 0 chr15 94098401 94098451 -7282070 + MER5B DNA MER1_type 3 53 -125 1744 172 0 38 chr15 94098451 94098771 -7281750 - AluJo SINE Alu -4 308 1 2320 264 71 12 chr15 94098772 94099041 -7281480 - L1MEc LINE L1 -2575 3640 3388 2114 111 7 10 chr15 94099041 94099359 -7281162 + AluSp SINE Alu 1 313 0 2320 264 71 12 chr15 94099359 94100523 -7279998 - L1MEc LINE L1 -2827 3388 2103 22 70 0 0 chr15 94100528 94100571 -7279950 + AT_rich Low_complexity Low_complexity 1 43 0 284 219 65 6 chr15 94100591 94100760 -7279761 + (TA)n Simple_repeat Simple_repeat 1 179 0 233 219 48 19 chr15 94100787 94100892 -7279629 + (TA)n Simple_repeat Simple_repeat 2 109 0 1791 199 74 0 chr15 94101080 94101446 -7279075 - MSTD LTR MaLR -3 393 1 488 312 43 37 chr15 94101465 94101792 -7278729 - L1MEc LINE L1 -4402 1994 1666 1995 271 83 37 chr15 94101842 94104262 -7276259 - L1MDa LINE L1 -3156 3384 851 500 267 85 86 chr15 94104361 94104843 -7275678 - L1MDa LINE L1 -5586 944 20 188 348 102 33 chr15 94104951 94105256 -7275265 - L2 LINE L2 -700 2614 2289 269 350 81 11 chr15 94105757 94105943 -7274578 - MIR SINE MIR -14 248 50 2018 208 20 81 chr15 94106259 94106812 -7273709 + LTR53 LTR ERVL 1 519 0 2105 140 132 5 chr15 94106894 94107273 -7273248 - MSTA LTR MaLR -1 427 1 539 291 13 60 chr15 94107450 94107684 -7272837 + MIR SINE MIR 3 225 -37 1432 153 226 17 chr15 94107934 94108288 -7272233 + MSTA LTR MaLR 1 428 0 217 109 43 22 chr15 94108809 94108855 -7271666 + (CACCC)n Simple_repeat Simple_repeat 1 47 0 421 289 72 49 chr15 94109100 94109363 -7271158 + LTR16A LTR ERVL 1 269 -181 29 0 0 0 chr15 94109796 94109825 -7270696 + AT_rich Low_complexity Low_complexity 1 29 0 1001 155 17 17 chr15 94111140 94111314 -7269207 + AluSg/x SINE Alu 105 278 -34 440 361 42 30 chr15 94111525 94111855 -7268666 - L2 LINE L2 -650 2664 2331 21 71 0 0 chr15 94112723 94112765 -7267756 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr15 94113904 94113932 -7266589 + AT_rich Low_complexity Low_complexity 1 28 0 287 367 160 6 chr15 94113990 94114159 -7266362 + MIR SINE MIR 13 207 -55 319 336 135 14 chr15 94114772 94114980 -7265541 + MIR SINE MIR 24 256 -6 880 289 83 62 chr15 94115323 94115788 -7264733 - L2 LINE L2 -4 3309 2828 1891 120 210 11 chr15 94115788 94116145 -7264376 - MSTA LTR MaLR 0 428 1 880 289 83 62 chr15 94116145 94116330 -7264191 - L2 LINE L2 -485 2828 2648 306 335 76 22 chr15 94116396 94116581 -7263940 + MIR SINE MIR 62 256 -6 2158 97 4 0 chr15 94117053 94117374 -7263147 - AluSg SINE Alu 0 328 7 213 37 0 0 chr15 94120603 94120630 -7259891 - MIR SINE MIR -152 110 84 30 0 0 0 chr15 94120748 94120778 -7259743 + AT_rich Low_complexity Low_complexity 1 30 0 384 284 92 97 chr15 94120848 94121302 -7259219 + LTR67 LTR ERVL 97 548 -9 203 171 0 0 chr15 94121741 94121776 -7258745 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 25 83 0 0 chr15 94121982 94122042 -7258479 + AT_rich Low_complexity Low_complexity 1 60 0 2325 173 26 24 chr15 94122056 94122512 -7258009 - MLT1D LTR MaLR -15 490 34 387 306 214 12 chr15 94123803 94124130 -7256391 + L2 LINE L2 2921 3313 0 861 219 13 44 chr15 94124173 94124401 -7256120 - MER58A DNA MER1_type -2 222 2 462 315 130 13 chr15 94124800 94125108 -7255413 + MLT1I LTR MaLR 64 407 -2 2188 130 22 108 chr15 94125122 94125373 -7255148 - MSTB LTR MaLR 0 426 232 1518 75 0 0 chr15 94125373 94125560 -7254961 + U2 snRNA snRNA 1 187 -1 2188 130 22 108 chr15 94125560 94125770 -7254751 - MSTB LTR MaLR -194 232 5 2031 128 3 13 chr15 94125972 94126270 -7254251 + AluSx SINE Alu 1 295 -17 289 369 64 21 chr15 94126472 94126659 -7253862 + L2 LINE L2 3076 3270 -2 1053 158 0 0 chr15 94128532 94128754 -7251767 + (TA)n Simple_repeat Simple_repeat 1 222 0 1942 74 0 19 chr15 94128812 94129081 -7251440 + AluY SINE Alu 1 264 -47 183 42 0 0 chr15 94129090 94129114 -7251407 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1028 220 80 42 chr15 94129115 94129459 -7251062 - MLT2B1 LTR ERVL -73 343 1 1368 208 11 55 chr15 94129748 94130015 -7250506 + L1MA6 LINE L1 5949 6197 -103 1831 139 177 19 chr15 94130015 94130186 -7250335 - MSTB1 LTR MaLR 0 432 289 354 45 0 0 chr15 94130186 94130230 -7250291 + (GA)n Simple_repeat Simple_repeat 1 44 0 1831 139 177 19 chr15 94130230 94130431 -7250090 - MSTB1 LTR MaLR -143 289 1 1368 208 11 55 chr15 94130431 94130529 -7249992 + L1MA6 LINE L1 6197 6298 -2 297 151 0 0 chr15 94133510 94133563 -7246958 + T-rich Low_complexity Low_complexity 1 53 0 430 318 35 40 chr15 94134886 94135263 -7245258 + L1ME3 LINE L1 1428 1802 -4594 23 33 0 0 chr15 94135303 94135333 -7245188 + AT_rich Low_complexity Low_complexity 1 30 0 946 188 156 44 chr15 94135354 94135604 -7244917 - AluJo SINE Alu -14 298 21 816 287 103 66 chr15 94135811 94137512 -7243009 + L1ME3 LINE L1 2190 3917 -2298 1772 107 37 0 chr15 94137512 94137784 -7242737 + L1PA8 LINE L1 5887 6168 -4 816 287 103 66 chr15 94137784 94137865 -7242656 + L1ME3 LINE L1 3917 3994 -2221 513 243 34 19 chr15 94137862 94138068 -7242453 + L1ME3 LINE L1 5799 6007 -232 * 246 264 79 64 chr15 94138107 94138247 -7242274 + L1ME3 LINE L1 5995 6136 -95 2266 101 3 22 chr15 94138920 94138953 -7241568 - AluSx SINE Alu -2 310 278 279 0 0 0 chr15 94138953 94138984 -7241537 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2266 101 3 22 chr15 94138984 94139266 -7241255 - AluSx SINE Alu -34 278 1 273 98 0 0 chr15 94142370 94142411 -7238110 + (CA)n Simple_repeat Simple_repeat 2 42 0 346 96 19 0 chr15 94144041 94144093 -7236428 + MADE1 DNA Mariner 1 53 -27 205 320 53 0 chr15 94144433 94144508 -7236013 + MIR SINE MIR 113 191 -71 267 264 46 29 chr15 94144582 94144655 -7235866 + (CATATA)n Simple_repeat Simple_repeat 4 74 -106 2429 110 21 19 chr15 94144655 94145029 -7235492 - THE1C LTR MaLR 0 375 1 267 264 46 29 chr15 94145029 94145129 -7235392 + (CATATA)n Simple_repeat Simple_repeat 74 180 0 252 258 81 24 chr15 94145446 94145570 -7234951 - L1M4 LINE L1 -3683 2463 2333 4061 271 86 46 chr15 94145581 94146199 -7234322 - L1MEc LINE L1 -1200 5015 4423 1973 142 3 3 chr15 94146199 94146495 -7234026 + AluSx SINE Alu 1 296 -16 4061 271 86 46 chr15 94146495 94147111 -7233410 - L1MEc LINE L1 -1792 4423 3833 2168 131 0 13 chr15 94147111 94147425 -7233096 - AluSq SINE Alu -3 310 1 4061 271 86 46 chr15 94147425 94147676 -7232845 - L1MEc LINE L1 -2382 3833 3593 2159 98 3 0 chr15 94147676 94147963 -7232558 - AluSx SINE Alu -24 288 1 4061 271 86 46 chr15 94147963 94149708 -7230813 - L1MEc LINE L1 -2622 3593 1713 549 313 71 44 chr15 94150704 94151110 -7229411 + L1ME4a LINE L1 5547 5963 -158 302 146 0 0 chr15 94153372 94153420 -7227101 + AluS SINE Alu 37 84 -219 1630 129 15 42 chr15 94153420 94153720 -7226801 + AluSx SINE Alu 31 323 0 7118 45 4 12 chr15 94154175 94154815 -7225706 + L1PA5 LINE L1 4743 5386 -768 2710 16 7 0 chr15 94154815 94155119 -7225402 + AluY SINE Alu 1 306 -5 7118 45 4 12 chr15 94155119 94155890 -7224631 + L1PA5 LINE L1 5386 6150 -4 304 210 0 0 chr15 94156735 94156797 -7223724 - L2 LINE L2 -1 3312 3251 934 201 149 55 chr15 94157865 94158174 -7222347 - MLT1A1 LTR MaLR -8 357 20 22 70 0 0 chr15 94158174 94158217 -7222304 + AT_rich Low_complexity Low_complexity 1 43 0 1741 119 87 0 chr15 94158413 94158666 -7221855 - AluSx SINE Alu -35 277 3 249 316 0 0 chr15 94159234 94159310 -7221211 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 346 274 10 10 chr15 94159668 94159770 -7220751 + MIR3 SINE MIR 83 184 -24 2139 116 0 52 chr15 94159887 94160269 -7220252 - AluSx SINE Alu 0 365 1 464 303 60 38 chr15 94160930 94161197 -7219324 + L3b LINE CR1 1102 1374 -209 265 350 80 0 chr15 94161940 94162040 -7218481 + MIR SINE MIR 29 136 -126 364 344 123 6 chr15 94162485 94162648 -7217873 + MIR SINE MIR 47 228 -34 524 62 0 0 chr15 94164231 94164296 -7216225 + tRNA-Lys-AAG tRNA tRNA 12 76 0 5542 152 21 11 chr15 94164298 94165258 -7215263 - LTR5 LTR ERVK 0 969 1 1924 151 0 13 chr15 94166288 94166586 -7213935 + AluSx SINE Alu 3 296 -16 405 314 33 37 chr15 94166715 94166986 -7213535 - L1 LINE L1 -1596 4550 4281 887 222 0 31 chr15 94167125 94167350 -7213171 - L1MA9 LINE L1 -36 6276 6059 2316 109 0 0 chr15 94167710 94168022 -7212499 - AluSx SINE Alu 0 312 1 393 217 0 0 chr15 94170243 94170326 -7210195 - MER53 DNA DNA 0 189 107 748 298 59 21 chr15 94170647 94170885 -7209636 - MER119 DNA MER1_type -332 251 5 484 241 82 10 chr15 94170927 94171134 -7209387 - L1ME LINE L1 -688 5478 5257 207 354 92 12 chr15 94171245 94171409 -7209112 - MIR3 SINE MIR -7 201 25 377 109 0 0 chr15 94171517 94171572 -7208949 - Alu SINE Alu -3 297 243 25 0 0 0 chr15 94173139 94173164 -7207357 + AT_rich Low_complexity Low_complexity 1 25 0 218 360 53 0 chr15 94173435 94173510 -7207011 - MIR SINE MIR -1 261 183 200 268 0 0 chr15 94175254 94175295 -7205226 + polypurine Low_complexity Low_complexity 2 42 0 351 0 0 0 chr15 94175514 94175553 -7204968 + (CA)n Simple_repeat Simple_repeat 2 40 0 846 168 0 0 chr15 94176086 94176217 -7204304 + AluJ SINE Alu 3 133 -169 956 159 6 0 chr15 94176244 94176420 -7204101 + A-rich Low_complexity Low_complexity 3 179 0 870 183 7 0 chr15 94176427 94176569 -7203952 + AluJ SINE Alu 140 282 -30 196 199 8 0 chr15 94176634 94176679 -7203842 + MIR SINE MIR 110 157 -51 252 0 0 0 chr15 94177596 94177624 -7202897 + (T)n Simple_repeat Simple_repeat 1 28 0 23 33 0 0 chr15 94178040 94178070 -7202451 + AT_rich Low_complexity Low_complexity 1 30 0 226 380 40 40 chr15 94178277 94178477 -7202044 - L2 LINE L2 0 3272 3073 2000 97 38 28 chr15 94178694 94178983 -7201538 + AluSp SINE Alu 2 293 -20 260 365 60 26 chr15 94180343 94180576 -7199945 - L2 LINE L2 -173 3099 2859 317 365 41 12 chr15 94180585 94180755 -7199766 + L2 LINE L2 2488 2662 -652 2600 208 50 11 chr15 94180786 94181401 -7199120 - L1MB7 LINE L1 -14 6170 5532 491 318 134 47 chr15 94181772 94182238 -7198283 + L2 LINE L2 2767 3271 -1 229 364 73 18 chr15 94182246 94182466 -7198055 - L2 LINE L2 -459 2855 2624 23 33 0 0 chr15 94183798 94183828 -7196693 + AT_rich Low_complexity Low_complexity 1 30 0 282 29 0 0 chr15 94184127 94184162 -7196359 + (TC)n Simple_repeat Simple_repeat 2 36 0 234 0 0 0 chr15 94184164 94184190 -7196331 + (CA)n Simple_repeat Simple_repeat 1 26 0 410 281 106 74 chr15 94184955 94185541 -7194980 + L1ME3A LINE L1 1105 1716 -4680 1804 160 24 3 chr15 94185541 94185828 -7194693 + AluSx SINE Alu 1 293 -19 410 281 106 74 chr15 94185828 94185893 -7194628 + L1ME3A LINE L1 1716 1777 -4619 21 0 0 0 chr15 94186171 94186192 -7194329 + AT_rich Low_complexity Low_complexity 1 21 0 832 297 83 40 chr15 94186405 94186934 -7193587 + L1ME3A LINE L1 2423 3011 -3204 2120 126 3 7 chr15 94186934 94187235 -7193286 - AluSq SINE Alu -13 300 1 832 297 83 40 chr15 94187235 94187630 -7192891 + L1ME3A LINE L1 3011 3387 -2828 * 1170 274 70 17 chr15 94187613 94188095 -7192426 + L1ME3A LINE L1 5723 6230 -9 277 213 0 0 chr15 94188326 94188373 -7192148 + 5S rRNA rRNA 1 47 -74 2040 107 57 4 chr15 94188459 94188740 -7191781 + AluSx SINE Alu 3 298 -14 185 267 14 14 chr15 94188783 94188929 -7191592 + (TA)n Simple_repeat Simple_repeat 1 146 0 543 323 56 43 chr15 94189388 94189878 -7190643 - L1MC/D LINE L1 -406 5715 5264 361 251 28 43 chr15 94191166 94191290 -7189231 + L1MC/D LINE L1 5479 5608 -2177 2294 110 0 3 chr15 94191325 94191635 -7188886 + AluSg SINE Alu 1 309 -1 410 315 105 63 chr15 94192109 94192614 -7187907 - HAL1b LINE L1 -661 687 162 29 0 0 0 chr15 94193404 94193433 -7187088 + AT_rich Low_complexity Low_complexity 1 29 0 2032 81 7 7 chr15 94193433 94193717 -7186804 - L1PA8 LINE L1 -2 6170 5887 550 335 36 29 chr15 94194107 94194613 -7185908 - HERV16 LTR ERVL -1773 3881 3336 775 296 130 8 chr15 94195098 94195483 -7185038 - HERV16 LTR ERVL -3654 1342 911 1505 96 20 5 chr15 94195835 94196034 -7184487 - AluSx SINE Alu -110 202 1 303 335 118 20 chr15 94196062 94196366 -7184155 - LTR16A LTR ERVL -95 355 22 4004 162 59 28 chr15 94196694 94196763 -7183758 + L1MA4 LINE L1 5429 5494 -806 2224 109 10 0 chr15 94196763 94197067 -7183454 + AluSq SINE Alu 7 313 0 4004 162 59 28 chr15 94197067 94197843 -7182678 + L1MA4 LINE L1 5494 6300 0 227 352 11 0 chr15 94197852 94197940 -7182581 - MIR3 SINE MIR -6 202 114 846 210 6 0 chr15 94197985 94198166 -7182355 + MER53 DNA DNA 1 182 -7 21 0 0 0 chr15 94198344 94198365 -7182156 + AT_rich Low_complexity Low_complexity 1 21 0 599 213 39 92 chr15 94198436 94198537 -7181984 - MER112 DNA MER1_type -6 254 168 1868 158 3 7 chr15 94198537 94198840 -7181681 + AluSx SINE Alu 2 303 -9 599 213 39 92 chr15 94198840 94198945 -7181576 - MER112 DNA MER1_type -92 168 59 1915 148 3 7 chr15 94199181 94199478 -7181043 + AluSx SINE Alu 1 296 -16 1493 211 0 13 chr15 94200115 94200413 -7180108 + AluJo SINE Alu 1 294 -18 21 0 0 0 chr15 94200635 94200656 -7179865 + AT_rich Low_complexity Low_complexity 1 21 0 211 327 136 12 chr15 94201444 94201606 -7178915 - MIR SINE MIR -50 212 31 555 190 99 16 chr15 94201932 94202053 -7178468 + MER94 DNA DNA 1 131 -3 366 23 0 0 chr15 94203097 94203140 -7177381 + (CA)n Simple_repeat Simple_repeat 2 44 0 215 319 75 0 chr15 94203708 94203802 -7176719 - MIR SINE MIR -109 153 53 228 111 0 0 chr15 94206090 94206126 -7174395 + (TG)n Simple_repeat Simple_repeat 1 36 0 435 296 198 49 chr15 94206685 94207033 -7173488 - L2 LINE L2 -1 3271 2872 2381 80 0 22 chr15 94208140 94208452 -7172069 + AluY SINE Alu 1 305 -6 366 23 0 0 chr15 94209798 94209841 -7170680 + (CA)n Simple_repeat Simple_repeat 1 43 0 1909 142 3 22 chr15 94210971 94211282 -7169239 - AluJb SINE Alu -6 306 2 1807 163 0 0 chr15 94211731 94212056 -7168465 + AluSx SINE Alu 1 325 0 535 276 26 37 chr15 94212640 94212912 -7167609 - L1ME4a LINE L1 -289 5832 5564 200 213 16 0 chr15 94215038 94215099 -7165422 + (TA)n Simple_repeat Simple_repeat 1 62 0 21 36 0 0 chr15 94216531 94216559 -7163962 + AT_rich Low_complexity Low_complexity 1 28 0 249 197 0 0 chr15 94217366 94217427 -7163094 + (ATG)n Simple_repeat Simple_repeat 2 62 0 368 182 0 57 chr15 94217446 94217534 -7162987 - MIR SINE MIR -26 236 154 30 45 0 0 chr15 94217723 94217767 -7162754 + AT_rich Low_complexity Low_complexity 1 44 0 288 295 171 0 chr15 94217908 94218013 -7162508 - L2 LINE L2 -1 3271 3149 448 262 48 14 chr15 94218216 94218361 -7162160 + MIR SINE MIR 101 250 -12 290 250 160 20 chr15 94220038 94220138 -7160383 - MIR3 SINE MIR -52 156 43 3167 22 0 0 chr15 94221307 94221673 -7158848 - L1PA2 LINE L1 -2 6153 5788 2202 111 0 0 chr15 94221673 94221962 -7158559 - AluSx SINE Alu -23 289 1 1613 125 41 24 chr15 94224335 94224630 -7155891 + L1MA2 LINE L1 5998 6297 -7 21 0 0 0 chr15 94224630 94224651 -7155870 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr15 94226199 94226231 -7154290 + AT_rich Low_complexity Low_complexity 1 32 0 879 102 40 17 chr15 94226672 94226848 -7153673 + CT-rich Low_complexity Low_complexity 1 180 0 2178 106 30 0 chr15 94226854 94227296 -7153225 - AluSp SINE Alu 0 451 1 239 327 20 27 chr15 94227868 94228018 -7152503 + MER5B DNA MER1_type 1 149 -29 4664 161 21 20 chr15 94228049 94229010 -7151511 - L1MA8 LINE L1 -28 6263 5302 4992 228 40 64 chr15 94230792 94232234 -7148287 + L1ME4a LINE L1 2750 4120 -2026 1393 201 50 25 chr15 94232234 94232517 -7148004 + AluJo SINE Alu 5 294 -18 4992 228 40 64 chr15 94232517 94233326 -7147195 + L1ME4a LINE L1 4120 4947 -1199 2298 193 139 20 chr15 94233301 94233939 -7146582 + L1MC3 LINE L1 7054 7767 -18 * 27 0 0 0 chr15 94234065 94234092 -7146429 + AT_rich Low_complexity Low_complexity 1 27 0 196 312 81 98 chr15 94234543 94234777 -7145744 - L2 LINE L2 0 3272 3043 365 294 188 18 chr15 94235321 94235597 -7144924 + L1ME4a LINE L1 5782 6104 -17 292 212 15 15 chr15 94239114 94239180 -7141341 - L2 LINE L2 -1 3312 3247 267 330 43 0 chr15 94239647 94239741 -7140780 + L2 LINE L2 3175 3272 0 459 35 0 0 chr15 94240142 94240199 -7140322 + (ATG)n Simple_repeat Simple_repeat 2 58 0 28 0 0 0 chr15 94240543 94240571 -7139950 + AT_rich Low_complexity Low_complexity 1 28 0 2211 119 0 19 chr15 94243495 94243813 -7136708 + AluSq SINE Alu 1 312 -1 200 163 23 0 chr15 94243874 94243917 -7136604 + GA-rich Low_complexity Low_complexity 3 46 0 1968 152 16 7 chr15 94244240 94244549 -7135972 + AluSx SINE Alu 1 312 0 378 273 41 0 chr15 94245010 94245131 -7135390 + MLT1J2 LTR MaLR 37 162 -288 502 163 0 0 chr15 94245278 94245358 -7135163 + AluS SINE Alu 1 80 -233 335 267 163 0 chr15 94245841 94245927 -7134594 - MER91C DNA MER1_type -23 117 18 261 306 0 0 chr15 94247127 94247199 -7133322 - MIR SINE MIR -8 254 183 239 347 54 48 chr15 94247200 94247347 -7133174 - L2 LINE L2 -2 3270 3123 724 235 35 92 chr15 94250885 94251255 -7129266 - HsTC2 DNA Tc2 0 1898 1550 251 145 0 129 chr15 94251269 94251331 -7129190 - MER66B LTR ERV1 -23 463 410 * 1346 154 39 4 chr15 94251298 94251557 -7128964 - MER41B LTR ERV1 -38 597 330 1723 109 13 53 chr15 94251558 94251862 -7128659 - LTR12 LTR ERV1 -236 478 187 231 231 0 0 chr15 94251882 94251934 -7128587 - LTR30 LTR ERV1 -670 52 1 1037 176 10 0 chr15 94251939 94252138 -7128383 - MER41B LTR ERV1 -305 330 130 903 249 60 14 chr15 94252162 94252447 -7128074 - HsTC2 DNA Tc2 -336 1562 1265 401 317 42 0 chr15 94252444 94252586 -7127935 - HsTC2 DNA Tc2 -1750 148 1 * 261 257 68 0 chr15 94252591 94252665 -7127856 - MIR SINE MIR -11 251 173 413 200 100 27 chr15 94253789 94253939 -7126582 - L1ME4a LINE L1 -6 6115 5955 22 0 0 0 chr15 94255590 94255612 -7124909 + AT_rich Low_complexity Low_complexity 1 22 0 247 265 76 43 chr15 94256470 94256637 -7123884 - MIR SINE MIR -46 216 43 219 313 99 15 chr15 94257131 94257262 -7123259 + MIR SINE MIR 67 208 -54 2338 60 0 48 chr15 94258333 94258647 -7121874 + AluY SINE Alu 1 299 -12 330 26 0 0 chr15 94258865 94258895 -7121626 + (TG)n Simple_repeat Simple_repeat 1 69 0 330 26 0 0 chr15 94258895 94258934 -7121587 + (TG)n Simple_repeat Simple_repeat 2 40 0 387 41 0 0 chr15 94260416 94260465 -7120056 + (TG)n Simple_repeat Simple_repeat 2 50 0 181 320 124 62 chr15 94261638 94262104 -7118417 - L2 LINE L2 -358 2956 2462 26 50 0 0 chr15 94263038 94263078 -7117443 + AT_rich Low_complexity Low_complexity 1 40 0 25 31 0 0 chr15 94265064 94265096 -7115425 + AT_rich Low_complexity Low_complexity 1 32 0 2294 108 3 9 chr15 94267215 94267530 -7112991 + AluSp SINE Alu 1 313 0 394 256 17 57 chr15 94267962 94268138 -7112383 - L1ME LINE L1 -440 5681 5513 364 369 72 25 chr15 94268237 94268473 -7112048 - MIR SINE MIR -13 249 3 198 125 0 0 chr15 94269566 94269598 -7110923 - L2 LINE L2 0 3313 3282 212 289 0 0 chr15 94269845 94269890 -7110631 + L3 LINE CR1 1514 1558 -19 4541 176 40 5 chr15 94270875 94271711 -7108810 - MER6 DNA MER2_type 0 865 1 383 216 0 0 chr15 94271645 94271719 -7108802 - MER6 DNA MER2_type -78 66 -7 213 257 40 40 chr15 94272131 94272205 -7108316 - MIR SINE MIR -159 103 30 203 347 110 12 chr15 94272296 94272469 -7108052 - L2 LINE L2 -898 2416 2227 2333 119 0 3 chr15 94272695 94273007 -7107514 + AluSx SINE Alu 1 311 -1 24 32 0 0 chr15 94273244 94273275 -7107246 + AT_rich Low_complexity Low_complexity 1 31 0 2289 103 0 7 chr15 94273420 94273720 -7106801 + AluSc SINE Alu 1 298 -11 431 301 30 40 chr15 94274021 94274323 -7106198 + MLT1J LTR MaLR 10 308 -203 228 268 14 14 chr15 94274490 94274561 -7105960 + (TATG)n Simple_repeat Simple_repeat 2 72 0 691 226 12 18 chr15 94275969 94276133 -7104388 - MER20 DNA MER1_type 0 219 57 307 253 71 10 chr15 94276259 94276358 -7104163 + MIR SINE MIR 110 214 -48 2050 121 3 7 chr15 94278398 94278703 -7101818 + AluY SINE Alu 1 304 -7 216 0 0 0 chr15 94279129 94279153 -7101368 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr15 94281290 94281313 -7099208 + AT_rich Low_complexity Low_complexity 1 23 0 293 323 133 13 chr15 94281331 94281489 -7099032 - MIR SINE MIR -50 212 36 236 266 0 0 chr15 94282033 94282097 -7098424 + L2 LINE L2 3250 3313 0 769 258 43 10 chr15 94283414 94283623 -7096898 + MIR SINE MIR 33 248 -14 356 219 32 8 chr15 94283872 94283995 -7096526 + GA-rich Low_complexity Low_complexity 4 129 0 198 0 0 0 chr15 94283995 94284017 -7096504 + (CAAG)n Simple_repeat Simple_repeat 2 23 0 268 301 53 26 chr15 94284623 94284736 -7095785 + L2 LINE L2 3154 3269 -3 2441 301 72 30 chr15 94287621 94288485 -7092036 - L2 LINE L2 -2 3311 2369 785 196 0 0 chr15 94288485 94288618 -7091903 + FLAM_A SINE Alu 1 133 0 2441 301 72 30 chr15 94288618 94289034 -7091487 - L2 LINE L2 -944 2369 1972 783 290 74 20 chr15 94289164 94289323 -7091198 - L2 LINE L2 -1668 1646 1497 2481 117 6 6 chr15 94289323 94289683 -7090838 - THE1B LTR MaLR -4 360 1 783 290 74 20 chr15 94289683 94289820 -7090701 - L2 LINE L2 -1817 1497 1334 181 149 40 27 chr15 94291611 94291685 -7088836 + (TA)n Simple_repeat Simple_repeat 1 75 0 34 55 0 0 chr15 94291697 94291752 -7088769 + AT_rich Low_complexity Low_complexity 1 55 0 1093 155 0 0 chr15 94293878 94294046 -7086475 + AluSg/x SINE Alu 144 311 -1 327 328 103 0 chr15 94294295 94294411 -7086110 - L2 LINE L2 -18 3254 3127 688 200 0 0 chr15 94294655 94294780 -7085741 - FRAM SINE Alu -10 166 42 1698 209 35 11 chr15 94294787 94295164 -7085357 + MLT1B LTR MaLR 4 389 -1 193 306 54 18 chr15 94295179 94295290 -7085231 - L2 LINE L2 -259 3054 2940 229 236 18 0 chr15 94296971 94297026 -7083495 + L2 LINE L2 3258 3313 0 2196 106 3 17 chr15 94297532 94297834 -7082687 - AluSp SINE Alu -15 298 1 350 170 196 27 chr15 94297861 94297973 -7082548 - MLT1H LTR MaLR 0 549 419 898 247 115 78 chr15 94298539 94298964 -7081557 + MLT1H LTR MaLR 109 549 0 2016 143 3 3 chr15 94299114 94299415 -7081106 - AluSx SINE Alu -11 301 1 23 0 0 0 chr15 94299644 94299667 -7080854 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr15 94300414 94300442 -7080079 + AT_rich Low_complexity Low_complexity 1 28 0 325 279 143 0 chr15 94300533 94300673 -7079848 + MER5A DNA MER1_type 30 189 0 414 336 76 29 chr15 94300706 94301125 -7079396 + L1ME1 LINE L1 2755 3193 -2953 29 84 0 0 chr15 94301154 94301225 -7079296 + AT_rich Low_complexity Low_complexity 1 71 0 383 326 78 43 chr15 94301416 94301738 -7078783 + L1ME1 LINE L1 3607 3939 -2207 1832 128 36 43 chr15 94302201 94302506 -7078015 - AluSx SINE Alu -9 303 1 322 338 68 15 chr15 94302866 94303129 -7077392 + L1ME1 LINE L1 4426 4702 -1444 2020 207 82 35 chr15 94303150 94303813 -7076708 + L1ME1 LINE L1 5213 5916 -250 1560 156 24 52 chr15 94304050 94304369 -7076152 + AluJo SINE Alu 3 313 0 523 181 8 8 chr15 94304752 94304879 -7075642 + GA-rich Low_complexity Low_complexity 4 130 0 2127 91 4 4 chr15 94305816 94306090 -7074431 - AluSq SINE Alu -19 294 21 448 265 148 6 chr15 94306209 94306371 -7074150 - MER5A DNA MER1_type -4 185 1 2194 116 7 0 chr15 94306555 94306849 -7073672 - AluSx SINE Alu -12 300 5 298 196 27 80 chr15 94307278 94307342 -7073179 + MER69 DNA AcHobo 42 99 -2427 2141 126 33 38 chr15 94307342 94307708 -7072813 - THE1B LTR MaLR 0 364 1 298 196 27 80 chr15 94307708 94307755 -7072766 + MER69 DNA AcHobo 99 147 -2379 793 294 69 69 chr15 94309198 94309692 -7070829 + MLT1J LTR MaLR 11 504 -7 22 35 0 0 chr15 94309968 94309997 -7070524 + AT_rich Low_complexity Low_complexity 1 29 0 1637 186 0 32 chr15 94310203 94310514 -7070007 - AluJo SINE Alu -11 301 1 5611 140 38 21 chr15 94310917 94312049 -7068472 + L1MC1 LINE L1 5181 6333 0 201 175 0 0 chr15 94312271 94312311 -7068210 + GA-rich Low_complexity Low_complexity 2 41 0 2832 3 0 0 chr15 94313123 94313428 -7067093 + AluY SINE Alu 1 305 -6 260 344 163 0 chr15 94314684 94314844 -7065677 - MIR SINE MIR -12 250 65 249 108 0 0 chr15 94315094 94315131 -7065390 + (TG)n Simple_repeat Simple_repeat 1 37 0 1765 181 14 0 chr15 94315828 94316121 -7064400 + AluJb SINE Alu 3 299 -13 423 0 0 0 chr15 94316927 94316974 -7063547 + (TG)n Simple_repeat Simple_repeat 2 48 0 28 0 0 0 chr15 94319959 94319987 -7060534 + AT_rich Low_complexity Low_complexity 1 28 0 939 90 0 23 chr15 94320246 94320379 -7060142 - AluSq/x SINE Alu -180 132 3 1960 146 16 7 chr15 94320874 94321183 -7059338 + AluSx SINE Alu 1 312 0 243 241 0 0 chr15 94321354 94321408 -7059113 + MIR SINE MIR 194 247 -15 240 35 0 0 chr15 94321408 94321437 -7059084 + (ATG)n Simple_repeat Simple_repeat 2 30 0 1005 225 88 85 chr15 94322028 94322451 -7058070 - MLT1A1 LTR MaLR 0 365 5 204 214 0 0 chr15 94322738 94322794 -7057727 + (TG)n Simple_repeat Simple_repeat 1 56 0 324 311 51 10 chr15 94323363 94323505 -7057016 - MIR SINE MIR -62 146 22 22 56 0 0 chr15 94324594 94324630 -7055891 + AT_rich Low_complexity Low_complexity 1 36 0 191 349 35 0 chr15 94327226 94327312 -7053209 + L2 LINE L2 3188 3276 -37 2047 136 0 13 chr15 94327883 94328191 -7052330 + AluJb SINE Alu 7 310 -2 1491 209 68 0 chr15 94328709 94329001 -7051520 - AluJb SINE Alu 0 312 1 251 330 10 10 chr15 94329130 94329227 -7051294 - MIR SINE MIR 0 262 166 1990 168 77 3 chr15 94329235 94329574 -7050947 + MLT1A1 LTR MaLR 2 365 0 1096 211 33 9 chr15 94332021 94332234 -7048287 - MER20 DNA MER1_type -1 218 1 344 184 0 0 chr15 94332579 94332628 -7047893 - MER20 DNA MER1_type -166 53 5 499 237 57 57 chr15 94332668 94332862 -7047659 + L1MD3 LINE L1 7788 7981 -14 409 128 14 64 chr15 94333239 94333380 -7047141 + GA-rich Low_complexity Low_complexity 2 135 0 2403 96 0 0 chr15 94334128 94334441 -7046080 - AluSq SINE Alu 0 313 1 221 350 51 33 chr15 94334600 94334782 -7045739 - MIR SINE MIR -66 142 3 283 78 39 0 chr15 94336996 94337047 -7043474 + (TG)n Simple_repeat Simple_repeat 1 53 0 883 266 96 31 chr15 94338224 94338611 -7041910 + MLT1J2 LTR MaLR 9 420 -30 230 293 85 12 chr15 94339770 94339852 -7040669 + MIR3 SINE MIR 87 174 -34 761 272 89 4 chr15 94340686 94340921 -7039600 - MIR SINE MIR 0 262 8 441 246 8 37 chr15 94341382 94341516 -7039005 + MER94 DNA DNA 5 134 0 292 298 122 8 chr15 94342106 94342237 -7038284 - L2 LINE L2 -1 3312 3167 359 337 72 75 chr15 94342319 94342549 -7037972 - L2 LINE L2 -1 3312 3083 1010 240 4 27 chr15 94342549 94342774 -7037747 + MER58A DNA MER1_type 2 221 -3 359 337 72 75 chr15 94342774 94343310 -7037211 - L2 LINE L2 -230 3083 2555 199 354 40 30 chr15 94344184 94344283 -7036238 - MIR SINE MIR -93 115 16 224 152 0 65 chr15 94345332 94345378 -7035143 + MIR SINE MIR 106 148 -114 3046 228 135 8 chr15 94346542 94347213 -7033308 - MER21B LTR ERV1 -1 862 81 180 0 0 0 chr15 94347213 94347233 -7033288 + (CA)n Simple_repeat Simple_repeat 1 20 0 3046 228 135 8 chr15 94347233 94347324 -7033197 - MER21B LTR ERV1 -782 81 3 290 343 76 51 chr15 94347401 94347716 -7032805 - L2 LINE L2 -337 2977 2655 217 319 22 59 chr15 94348455 94348590 -7031931 - MIR3 SINE MIR -65 143 14 397 306 38 51 chr15 94349330 94349487 -7031034 + L2 LINE L2 3159 3313 0 464 210 217 32 chr15 94350433 94350590 -7029931 + MER5A DNA MER1_type 4 189 0 203 286 36 0 chr15 94355525 94355581 -7024940 - MIR3 SINE MIR -8 200 143 281 264 11 35 chr15 94356117 94356204 -7024317 + L2 LINE L2 3225 3309 -4 309 347 27 20 chr15 94356205 94356352 -7024169 - MIR3 SINE MIR -59 149 2 345 93 0 0 chr15 94356908 94356962 -7023559 + (CA)n Simple_repeat Simple_repeat 1 54 0 327 25 0 0 chr15 94358379 94358419 -7022102 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr15 94361435 94361458 -7019063 + AT_rich Low_complexity Low_complexity 1 23 0 359 318 41 61 chr15 94361994 94362239 -7018282 + MIR SINE MIR 9 248 -14 1359 133 5 0 chr15 94362391 94362594 -7017927 + L1PA13 LINE L1 5957 6160 -3 299 292 42 0 chr15 94362775 94362871 -7017650 - MIR SINE MIR -48 214 115 3839 188 44 25 chr15 94363265 94364062 -7016459 + L1MB5 LINE L1 5363 6174 0 1730 106 4 55 chr15 94366139 94366414 -7014107 - AluSx SINE Alu -13 299 39 2370 63 0 14 chr15 94367224 94367543 -7012978 + AluY SINE Alu 1 315 0 300 247 51 123 chr15 94367552 94367873 -7012648 - L2 LINE L2 -290 3023 2723 1183 156 0 88 chr15 94368424 94368662 -7011859 + AluJb SINE Alu 85 301 -11 209 186 34 0 chr15 94369813 94369872 -7010649 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 2079 144 0 0 chr15 94370025 94370323 -7010198 - AluSx SINE Alu -14 298 1 26 50 0 0 chr15 94371112 94371152 -7009369 + AT_rich Low_complexity Low_complexity 1 40 0 195 42 0 0 chr15 94371274 94371298 -7009223 + (TA)n Simple_repeat Simple_repeat 2 25 0 351 157 0 0 chr15 94371627 94371697 -7008824 + (TG)n Simple_repeat Simple_repeat 1 70 0 263 274 0 0 chr15 94374556 94374618 -7005903 - MIR SINE MIR -119 143 82 1503 146 127 11 chr15 94374626 94374901 -7005620 + AluSg1 SINE Alu 3 309 0 475 309 81 44 chr15 94375181 94375589 -7004932 + L2 LINE L2 2848 3270 -43 808 142 130 30 chr15 94376233 94376258 -7004263 + MSTB LTR MaLR 186 207 -219 459 35 0 0 chr15 94376258 94376315 -7004206 + (TC)n Simple_repeat Simple_repeat 1 57 0 808 142 130 30 chr15 94376315 94376458 -7004063 + MSTB LTR MaLR 207 371 -55 252 188 0 0 chr15 94376460 94376508 -7004013 + A-rich Low_complexity Low_complexity 1 48 0 1902 124 28 14 chr15 94376627 94376917 -7003604 + AluSq SINE Alu 1 294 -19 354 67 11 67 chr15 94376917 94377006 -7003515 + (GGGGA)n Simple_repeat Simple_repeat 3 86 0 282 289 67 26 chr15 94378391 94378525 -7001996 + MIR SINE MIR 37 174 -57 206 146 42 0 chr15 94379677 94379725 -7000796 + A-rich Low_complexity Low_complexity 5 54 0 21 36 0 0 chr15 94382012 94382040 -6998481 + AT_rich Low_complexity Low_complexity 1 28 0 230 303 10 0 chr15 94382492 94382591 -6997930 + GA-rich Low_complexity Low_complexity 2 101 0 310 308 28 19 chr15 94383344 94383451 -6997070 + MIR SINE MIR 124 231 -31 192 77 0 0 chr15 94383931 94383957 -6996564 + (T)n Simple_repeat Simple_repeat 1 26 0 261 311 10 39 chr15 94384091 94384194 -6996327 - MIR SINE MIR -8 254 155 471 308 98 29 chr15 94384729 94385044 -6995477 - L1ME4a LINE L1 -244 5877 5541 216 163 0 0 chr15 94385814 94385857 -6994664 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 721 226 58 82 chr15 94386121 94386378 -6994143 + MIR SINE MIR 12 262 0 267 79 0 0 chr15 94386839 94386877 -6993644 + (TG)n Simple_repeat Simple_repeat 1 38 0 282 136 0 0 chr15 94389060 94389104 -6991417 - MER103 DNA DNA -66 100 57 24 53 0 0 chr15 94389256 94389294 -6991227 + AT_rich Low_complexity Low_complexity 1 38 0 300 27 0 0 chr15 94390079 94390116 -6990405 + (CA)n Simple_repeat Simple_repeat 2 38 0 297 244 221 38 chr15 94390625 94390756 -6989765 + MIR3 SINE MIR 16 170 -38 334 220 92 64 chr15 94390848 94390957 -6989564 - L2 LINE L2 -10 3303 3192 193 286 43 29 chr15 94392568 94392638 -6987883 - MIR3 SINE MIR -33 175 105 2221 89 48 0 chr15 94393531 94393824 -6986697 + AluSg SINE Alu 1 307 -3 201 364 91 0 chr15 94393864 94393974 -6986547 - L2 LINE L2 -2 3270 3151 216 86 0 0 chr15 94394435 94394470 -6986051 + (CA)n Simple_repeat Simple_repeat 2 36 0 2405 87 0 0 chr15 94395001 94395301 -6985220 + AluSg SINE Alu 1 300 -10 1395 126 0 0 chr15 94396085 94396283 -6984238 - AluSg/x SINE Alu 0 312 115 429 70 0 0 chr15 94396696 94396753 -6983768 + (CA)n Simple_repeat Simple_repeat 1 57 0 342 291 146 12 chr15 94396809 94396974 -6983547 - MIR SINE MIR -27 235 49 3883 185 13 42 chr15 94398948 94399856 -6980665 - L1MB5 LINE L1 -8 6166 5285 374 341 56 0 chr15 94399968 94400147 -6980374 + MIR SINE MIR 47 235 -27 194 237 0 68 chr15 94400117 94400176 -6980345 + L2 LINE L2 3210 3264 -8 * 182 220 34 34 chr15 94402744 94402803 -6977718 + L3 LINE CR1 1275 1333 -244 1740 128 83 3 chr15 94404479 94404768 -6975753 + AluSx SINE Alu 1 312 0 526 40 40 0 chr15 94404771 94404847 -6975674 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 330 265 0 12 chr15 94404906 94404989 -6975532 + MIR SINE MIR 70 151 -111 239 312 25 102 chr15 94407014 94407171 -6973350 - MIR3 SINE MIR -3 205 61 22 35 0 0 chr15 94407901 94407930 -6972591 + AT_rich Low_complexity Low_complexity 1 29 0 279 279 58 0 chr15 94408082 94408168 -6972353 + MIR SINE MIR 102 192 -70 233 323 232 15 chr15 94408366 94408564 -6971957 - L3 LINE CR1 -355 1222 982 2122 137 30 33 chr15 94409287 94409652 -6970869 - THE1B LTR MaLR 0 364 1 248 320 172 16 chr15 94409946 94410068 -6970453 + L2 LINE L2 3169 3309 -4 591 231 0 21 chr15 94410920 94411063 -6969458 + FLAM_C SINE Alu 3 142 -1 227 179 103 0 chr15 94411256 94411334 -6969187 - MER104 DNA Tc2 -72 108 23 2398 103 0 3 chr15 94411337 94411647 -6968874 + AluSg1 SINE Alu 1 309 0 2367 69 3 10 chr15 94411912 94412215 -6968306 - AluY SINE Alu -10 301 1 327 293 98 93 chr15 94413006 94413231 -6967290 - MIR SINE MIR -17 245 20 3851 156 42 4 chr15 94413836 94414533 -6965988 + L1MC1 LINE L1 5603 6325 -8 1906 161 0 13 chr15 94414533 94414837 -6965684 + AluJo SINE Alu 1 300 -12 1077 90 0 0 chr15 94416139 94416272 -6964249 + AluSx SINE Alu 1 133 -180 1339 30 0 0 chr15 94416274 94416440 -6964081 - L1P2 LINE L1 -335 5820 5655 230 0 0 0 chr15 94416441 94416470 -6964051 + L1PA3 LINE L1 6114 6142 -13 1035 127 0 19 chr15 94416475 94416633 -6963888 + AluSx SINE Alu 119 273 -37 180 0 0 0 chr15 94419120 94419140 -6961381 + (TG)n Simple_repeat Simple_repeat 2 21 0 1545 227 40 45 chr15 94419140 94419535 -6960986 + L1MB7 LINE L1 1198 1711 -4933 1570 182 38 3 chr15 94419535 94419854 -6960667 + L1MC1 LINE L1 6003 6332 -1 1545 227 40 45 chr15 94419854 94420021 -6960500 + L1MB7 LINE L1 1711 1877 -4767 682 221 14 35 chr15 94420015 94420359 -6960162 + L1MB7 LINE L1 2579 2906 -3738 * 646 220 106 0 chr15 94420383 94420524 -6959997 + FRAM SINE Alu 1 154 -22 2461 234 59 39 chr15 94420583 94421697 -6958824 + L1MB7 LINE L1 2948 4084 -2560 2048 245 53 34 chr15 94421743 94421770 -6958751 + L1MB7 LINE L1 5920 5945 -737 1848 243 29 11 chr15 94421770 94422247 -6958274 + MER66B LTR ERV1 1 486 0 2048 245 53 34 chr15 94422247 94422496 -6958025 + L1MB7 LINE L1 5945 6188 -494 2271 104 0 7 chr15 94422496 94422795 -6957726 - AluSq SINE Alu -16 297 1 2082 115 0 11 chr15 94422798 94423105 -6957416 - AluSg SINE Alu 0 304 1 2048 245 53 34 chr15 94423105 94423569 -6956952 + L1MB7 LINE L1 6189 6681 -1 271 253 71 20 chr15 94423856 94423955 -6956566 + MLT1I LTR MaLR 110 213 -196 2119 116 17 0 chr15 94424102 94424394 -6956127 - AluSx SINE Alu -11 301 5 186 103 0 0 chr15 94424590 94424619 -6955902 + (CA)n Simple_repeat Simple_repeat 1 29 0 2258 94 13 7 chr15 94475073 94475371 -6905150 - AluSp SINE Alu -13 300 1 388 247 0 31 chr15 94475371 94475468 -6905053 + Tigger3(Golem) DNA MER2_type 2936 3029 0 219 240 10 94 chr15 94475470 94475566 -6904955 + MIR SINE MIR 119 206 -56 2039 116 13 10 chr15 94475637 94475939 -6904582 - AluSq SINE Alu -10 303 1 1368 177 8 35 chr15 94476886 94477048 -6903473 + AluJb SINE Alu 1 155 -157 2654 121 11 8 chr15 94477048 94477411 -6903110 - THE1B LTR MaLR 0 364 1 1368 177 8 35 chr15 94477411 94477508 -6903013 + AluJb SINE Alu 155 253 -59 671 228 62 0 chr15 94477773 94477918 -6902603 + AluJb SINE Alu 146 299 -13 203 241 81 81 chr15 94478320 94478407 -6902114 + L2 LINE L2 3149 3235 -37 2186 108 0 3 chr15 94478596 94478891 -6901630 + AluSx SINE Alu 1 294 -18 1067 133 5 76 chr15 94478991 94479201 -6901320 + L1MA9 LINE L1 6118 6312 0 992 129 14 0 chr15 94479344 94479491 -6901030 - AluJb SINE Alu -17 295 147 550 174 20 10 chr15 94479893 94479991 -6900530 - FRAM SINE Alu -9 167 69 1027 203 16 11 chr15 94480189 94480376 -6900145 - MER5A DNA MER1_type -1 188 1 362 287 104 0 chr15 94480453 94480568 -6899953 + MIR SINE MIR 28 154 -108 2438 187 98 40 chr15 94480568 94480737 -6899784 - MER6A DNA MER2_type -260 605 447 1889 121 3 87 chr15 94480737 94481069 -6899452 + AluSx SINE Alu 1 304 -8 2438 187 98 40 chr15 94481069 94481305 -6899216 - MER6A DNA MER2_type -418 447 226 4172 139 91 130 chr15 94481305 94482165 -6898356 + LTR12 LTR ERV1 1 826 0 2438 187 98 40 chr15 94482165 94482330 -6898191 - MER6A DNA MER2_type -639 226 1 181 296 0 28 chr15 94482330 94482401 -6898120 + MIR SINE MIR 156 224 -38 279 364 52 19 chr15 94482409 94482563 -6897958 - MIR SINE MIR -64 198 40 2100 109 41 0 chr15 94482623 94482917 -6897604 - AluSp SINE Alu -7 306 1 22 0 0 0 chr15 94483103 94483125 -6897396 + AT_rich Low_complexity Low_complexity 1 22 0 2085 135 10 0 chr15 94484023 94484326 -6896195 - AluSg SINE Alu -2 308 3 380 306 54 27 chr15 94484624 94484771 -6895750 + MIR SINE MIR 20 170 -92 372 355 6 12 chr15 94485765 94485931 -6894590 + L2 LINE L2 2172 2336 -978 307 341 40 17 chr15 94486323 94486499 -6894022 + MIR SINE MIR 36 215 -47 486 298 34 11 chr15 94486573 94486751 -6893770 - MIR SINE MIR -45 217 36 377 209 44 11 chr15 94488210 94488301 -6892220 - MLT1I LTR MaLR 0 409 316 218 254 51 0 chr15 94489436 94489495 -6891026 - L2 LINE L2 -27 3286 3225 485 130 0 65 chr15 94489516 94489608 -6890913 + AluJ/FLAM SINE Alu 2 87 -225 285 271 194 10 chr15 94490408 94490539 -6889982 + MIR SINE MIR 3 152 -58 2196 111 10 10 chr15 94490580 94490878 -6889643 + AluSx SINE Alu 1 298 -14 297 277 43 103 chr15 94491619 94491872 -6888649 - L2 LINE L2 -368 2946 2709 2358 68 3 7 chr15 94491875 94492170 -6888351 - AluSp SINE Alu -19 294 1 212 306 42 0 chr15 94493371 94493443 -6887078 - L2 LINE L2 -1001 2313 2239 310 333 10 0 chr15 94495198 94495300 -6885221 + MIR3 SINE MIR 66 168 -40 1126 86 0 0 chr15 94496940 94497080 -6883441 + AluSg/x SINE Alu 154 293 -19 236 336 71 43 chr15 94497109 94497249 -6883272 - MER5A DNA MER1_type 0 189 35 302 339 9 9 chr15 94497275 94497384 -6883137 + MIR SINE MIR 118 226 -36 380 252 63 21 chr15 94497501 94497644 -6882877 - MER103 DNA DNA -10 156 8 2473 77 7 0 chr15 94499678 94499978 -6880543 - AluSg SINE Alu -8 302 1 1961 87 94 22 chr15 94500408 94500684 -6879837 - AluSg SINE Alu -14 296 1 182 354 73 0 chr15 94501138 94501220 -6879301 - L2 LINE L2 -15 3298 3211 378 235 35 0 chr15 94501458 94501543 -6878978 + MLT1I LTR MaLR 26 113 -296 1833 114 4 19 chr15 94501543 94501814 -6878707 + AluSx SINE Alu 1 267 -45 23 54 0 0 chr15 94502862 94502899 -6877622 + AT_rich Low_complexity Low_complexity 1 37 0 1906 149 3 0 chr15 94503060 94503356 -6877165 + AluJb SINE Alu 1 297 -15 29 47 0 0 chr15 94505306 94505349 -6875172 + AT_rich Low_complexity Low_complexity 1 43 0 418 354 140 9 chr15 94506530 94506759 -6873762 + MIR SINE MIR 2 260 -2 186 43 0 0 chr15 94507244 94507267 -6873254 + (TTTTC)n Simple_repeat Simple_repeat 1 23 0 681 194 0 0 chr15 94507281 94507389 -6873132 - AluSg/x SINE Alu -39 271 164 679 193 9 0 chr15 94507387 94507496 -6873025 - AluJo/FLAM SINE Alu -201 111 2 * 288 285 51 65 chr15 94508570 94508784 -6871737 - MLT1J LTR MaLR -296 215 5 3917 96 47 38 chr15 94508955 94509530 -6870991 + LTR12 LTR ERV1 2 581 -133 184 347 69 98 chr15 94509583 94509828 -6870693 - L2 LINE L2 -43 3229 2992 234 340 11 0 chr15 94510774 94510868 -6869653 + L1ME LINE L1 5767 5861 -260 215 207 103 58 chr15 94511665 94511752 -6868769 - MIR SINE MIR 0 262 172 3589 115 2 16 chr15 94512754 94513251 -6867270 + MER1A DNA MER1_type 40 529 0 260 356 68 0 chr15 94513710 94513828 -6866693 + L2 LINE L2 3179 3304 -9 202 298 24 36 chr15 94514505 94514589 -6865932 + MIR SINE MIR 71 153 -109 23 0 0 0 chr15 94515100 94515123 -6865398 + AT_rich Low_complexity Low_complexity 1 23 0 261 286 56 75 chr15 94515135 94515296 -6865225 - MER5A DNA MER1_type 0 189 32 310 292 102 19 chr15 94517494 94517710 -6862811 + L1ME4a LINE L1 5724 5957 -164 1394 168 0 142 chr15 94517777 94518129 -6862392 - AluJo SINE Alu 0 302 1 857 166 0 91 chr15 94518249 94518448 -6862073 - AluJo SINE Alu -131 181 1 21 0 0 0 chr15 94520489 94520510 -6860011 + AT_rich Low_complexity Low_complexity 1 21 0 1709 113 0 0 chr15 94520838 94521077 -6859444 + AluSp SINE Alu 74 312 -1 225 203 51 0 chr15 94522277 94522336 -6858185 - MLT1L LTR MaLR -52 563 502 239 289 0 0 chr15 94522643 94522695 -6857826 - MLT1L LTR MaLR -503 112 61 2232 92 7 3 chr15 94522696 94523010 -6857511 - AluSx SINE Alu 0 315 1 232 356 47 27 chr15 94523709 94523858 -6856663 + L2 LINE L2 2892 3043 -229 813 284 19 5 chr15 94524839 94525047 -6855474 + MIR SINE MIR 26 236 -26 27 73 0 0 chr15 94525545 94525600 -6854921 + AT_rich Low_complexity Low_complexity 1 55 0 665 246 60 15 chr15 94526092 94526291 -6854230 + MER63A DNA MER1_type 1 208 -2 2143 85 9 60 chr15 94526585 94526903 -6853618 - AluSx SINE Alu -9 303 2 339 336 35 0 chr15 94527891 94528007 -6852514 + MER91A DNA MER1_type 4 123 -73 1530 187 6 47 chr15 94528661 94528982 -6851539 + AluJb SINE Alu 5 312 0 847 272 119 26 chr15 94529103 94529530 -6850991 - MLT1J LTR MaLR -10 501 35 198 0 0 0 chr15 94530789 94530811 -6849710 + (CA)n Simple_repeat Simple_repeat 2 23 0 204 231 0 0 chr15 94531810 94531849 -6848672 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 714 212 99 0 chr15 94533181 94533332 -6847189 + AluJb SINE Alu 137 302 -10 185 371 76 48 chr15 94535908 94536013 -6844508 - L2 LINE L2 -69 3203 3096 267 31 0 0 chr15 94536074 94536106 -6844415 + (TA)n Simple_repeat Simple_repeat 2 33 0 1958 141 3 3 chr15 94536106 94536397 -6844124 - AluSx SINE Alu -21 291 1 478 287 249 12 chr15 94537446 94537780 -6842741 - L2 LINE L2 -1 3312 2900 1755 174 10 0 chr15 94537973 94538267 -6842254 + AluJb SINE Alu 1 297 -15 438 20 0 0 chr15 94539132 94539183 -6841338 + (TA)n Simple_repeat Simple_repeat 1 51 0 220 177 0 48 chr15 94540955 94541017 -6839504 + A-rich Low_complexity Low_complexity 5 63 0 24 32 0 0 chr15 94541199 94541230 -6839291 + AT_rich Low_complexity Low_complexity 1 31 0 544 100 42 0 chr15 94541232 94541352 -6839169 + (TAGA)n Simple_repeat Simple_repeat 4 128 0 462 166 61 111 chr15 94542455 94542636 -6837885 + MER69A DNA AcHobo 4 175 -2 565 147 18 0 chr15 94543051 94543160 -6837361 + GA-rich Low_complexity Low_complexity 3 113 0 216 299 15 0 chr15 94543303 94543370 -6837151 - L2 LINE L2 0 3272 3205 188 293 0 0 chr15 94544122 94544180 -6836341 - MIR3 SINE MIR -2 206 149 234 0 0 0 chr15 94544981 94545007 -6835514 + (CA)n Simple_repeat Simple_repeat 2 27 0 310 255 330 0 chr15 94545168 94545326 -6835195 + MIR SINE MIR 42 250 -12 308 177 0 0 chr15 94546693 94546755 -6833766 + L1PB4 LINE L1 6091 6152 -4 229 326 57 28 chr15 94547054 94547195 -6833326 - L2 LINE L2 -8 3305 3161 2240 117 3 0 chr15 94547430 94547730 -6832791 + AluSx SINE Alu 1 301 -11 231 200 0 0 chr15 94547990 94548035 -6832486 - L2 LINE L2 0 3313 3269 1870 161 24 3 chr15 94548479 94548808 -6831713 + MER1B DNA MER1_type 1 336 -1 2506 150 16 7 chr15 94548908 94549334 -6831187 - Tigger7 DNA MER2_type -2057 430 1 2304 97 3 7 chr15 94549517 94549827 -6830694 + AluSq SINE Alu 1 309 -4 183 42 0 0 chr15 94549892 94549916 -6830605 + (TC)n Simple_repeat Simple_repeat 1 24 0 565 169 32 0 chr15 94549956 94550080 -6830441 + GA-rich Low_complexity Low_complexity 2 129 0 228 163 0 0 chr15 94551709 94551752 -6828769 + T-rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr15 94552058 94552087 -6828434 + AT_rich Low_complexity Low_complexity 1 29 0 204 294 0 15 chr15 94552530 94552598 -6827923 + CT-rich Low_complexity Low_complexity 3 69 0 319 302 31 0 chr15 94553117 94553213 -6827308 + MIR3 SINE MIR 105 203 -5 1288 213 81 6 chr15 94553770 94554090 -6826431 + MER2 DNA MER2_type 1 344 0 248 348 11 0 chr15 94554230 94554319 -6826202 - L3 LINE CR1 -25 1552 1463 260 295 174 58 chr15 94554488 94554579 -6825942 - L3 LINE CR1 -212 1365 1286 1793 191 15 12 chr15 94554579 94554919 -6825602 + MER58B DNA MER1_type 1 341 0 260 295 174 58 chr15 94554919 94555068 -6825453 - L3 LINE CR1 -291 1286 1097 1160 208 40 57 chr15 94555078 94555448 -6825073 + L1ME2 LINE L1 5778 6141 -23 1927 154 0 16 chr15 94556917 94557229 -6823292 + AluJo SINE Alu 1 307 -5 342 310 92 2 chr15 94558029 94558211 -6822310 + MIR SINE MIR 28 226 -36 937 182 42 0 chr15 94558281 94558446 -6822075 - AluJb SINE Alu -9 303 132 281 308 7 48 chr15 94558564 94558690 -6821831 + MIR SINE MIR 6 127 -135 2168 101 54 0 chr15 94558690 94558987 -6821534 - AluSp SINE Alu 0 313 1 281 308 7 48 chr15 94558987 94559006 -6821515 + MIR SINE MIR 127 145 -117 182 128 26 0 chr15 94559590 94559629 -6820892 + GA-rich Low_complexity Low_complexity 1 40 0 356 304 101 13 chr15 94559910 94560097 -6820424 - MIR SINE MIR -3 259 54 181 269 28 111 chr15 94560340 94560448 -6820073 + MIR SINE MIR 46 144 -118 186 292 52 62 chr15 94560721 94560817 -6819704 - L2 LINE L2 -177 3095 3001 22 0 0 0 chr15 94562132 94562154 -6818367 + AT_rich Low_complexity Low_complexity 1 22 0 304 167 37 0 chr15 94565387 94565441 -6815080 + L2 LINE L2 3204 3259 -13 334 321 82 11 chr15 94565550 94565734 -6814787 - MIR SINE MIR -17 245 49 259 280 43 11 chr15 94565805 94565898 -6814623 - MIR3 SINE MIR -3 205 110 2484 57 0 7 chr15 94565952 94566253 -6814268 - AluY SINE Alu -12 299 1 226 23 47 47 chr15 94566658 94566701 -6813820 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 191 260 27 96 chr15 94567577 94567650 -6812871 + L2 LINE L2 3205 3272 0 282 29 0 0 chr15 94567913 94567948 -6812573 + (CA)n Simple_repeat Simple_repeat 2 36 0 749 143 77 36 chr15 94567948 94568144 -6812377 + L1MD3 LINE L1 7779 7982 -13 1095 139 0 0 chr15 94568205 94568385 -6812136 + (TATTG)n Simple_repeat Simple_repeat 1 180 0 1548 181 7 59 chr15 94568538 94568842 -6811679 - AluJo SINE Alu -24 288 1 31 26 0 0 chr15 94568938 94568976 -6811545 + AT_rich Low_complexity Low_complexity 1 38 0 889 92 42 0 chr15 94568976 94569096 -6811425 - AluSc SINE Alu -175 134 10 243 284 128 20 chr15 94569219 94569321 -6811200 + L2 LINE L2 2204 2316 -998 472 182 0 0 chr15 94569940 94570017 -6810504 + AluJ/FLAM SINE Alu 1 77 -235 31 44 0 0 chr15 94570053 94570098 -6810423 + AT_rich Low_complexity Low_complexity 1 45 0 337 106 15 30 chr15 94570118 94570184 -6810337 + Alu SINE Alu 237 301 -1 308 292 54 18 chr15 94570197 94570365 -6810156 - MLT1J LTR MaLR -228 283 110 4502 175 9 10 chr15 94570531 94571422 -6809099 - L1MB7 LINE L1 -8 6674 5785 707 65 0 0 chr15 94571422 94571514 -6809007 - AluSp SINE Alu -6 307 216 1196 86 7 0 chr15 94571516 94571668 -6808853 - AluSp SINE Alu -160 153 1 3266 207 65 51 chr15 94571668 94571764 -6808757 - L1MB7 LINE L1 -850 5794 5701 1521 165 65 7 chr15 94571764 94572043 -6808478 - AluJo SINE Alu -6 306 12 3266 207 65 51 chr15 94572043 94572121 -6808400 - L1MB7 LINE L1 -943 5701 5626 1765 174 7 16 chr15 94572121 94572431 -6808090 + AluJo SINE Alu 1 307 -5 3266 207 65 51 chr15 94572431 94573354 -6807167 - L1MB7 LINE L1 -1018 5626 4681 4705 236 80 52 chr15 94573360 94575319 -6805202 - L1MB7 LINE L1 -3684 2960 791 1053 193 201 12 chr15 94575319 94575573 -6804948 - AluJb SINE Alu 0 302 1 4705 236 80 52 chr15 94575573 94576372 -6804149 - L1MB7 LINE L1 -5853 791 16 1190 180 115 46 chr15 94576473 94576734 -6803787 + AluJo SINE Alu 3 281 -31 390 167 0 0 chr15 94576749 94576857 -6803664 + (TA)n Simple_repeat Simple_repeat 1 108 0 279 270 130 9 chr15 94577620 94577735 -6802786 + MIR SINE MIR 134 262 0 1669 159 0 11 chr15 94577833 94578128 -6802393 - AluJb SINE Alu 0 306 15 339 125 18 0 chr15 94578151 94578207 -6802314 + L2 LINE L2 3014 3070 -243 543 263 0 0 chr15 94578240 94578354 -6802167 + MER81 DNA DNA 1 114 0 346 282 24 81 chr15 94578385 94578594 -6801927 + L2 LINE L2 3117 3313 0 21 0 0 0 chr15 94579459 94579480 -6801041 + AT_rich Low_complexity Low_complexity 1 21 0 281 293 33 25 chr15 94580025 94580211 -6800310 - MIR SINE MIR -14 248 2 2209 110 7 0 chr15 94580421 94580729 -6799792 + AluSp SINE Alu 1 310 -3 202 300 115 35 chr15 94580866 94581066 -6799455 + L2 LINE L2 2560 2775 -539 222 323 0 0 chr15 94581214 94581276 -6799245 + L2 LINE L2 3004 3065 -248 1968 110 40 43 chr15 94581535 94581836 -6798685 + AluSx SINE Alu 1 300 -12 588 300 110 18 chr15 94582183 94582410 -6798111 - MIR SINE MIR -6 256 9 263 205 68 77 chr15 94582879 94582996 -6797525 + MER103 DNA DNA 44 159 -7 1970 116 7 30 chr15 94583024 94583327 -6797194 - AluSx SINE Alu -6 306 11 10416 39 0 2 chr15 94583414 94585386 -6795135 + L1PA5 LINE L1 4161 6138 -16 1804 120 4 15 chr15 94585901 94586167 -6794354 + AluSx SINE Alu 40 302 -10 21 0 0 0 chr15 94586199 94586220 -6794301 + AT_rich Low_complexity Low_complexity 1 21 0 352 176 235 10 chr15 94586322 94586424 -6794097 + L2 LINE L2 3186 3310 -3 2060 125 17 3 chr15 94587073 94587369 -6793152 - AluSx SINE Alu -12 300 1 987 182 0 0 chr15 94587576 94587741 -6792780 - AluJb SINE Alu -3 309 145 278 127 76 0 chr15 94587742 94587821 -6792700 + (TA)n Simple_repeat Simple_repeat 2 86 0 732 190 0 0 chr15 94587822 94587938 -6792583 - FLAM_C SINE Alu -26 117 2 369 281 44 50 chr15 94589341 94589501 -6791020 - MIR SINE MIR -66 196 38 180 111 0 0 chr15 94589576 94589603 -6790918 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1400 215 134 97 chr15 94589831 94590587 -6789934 + LTR1B LTR ERV1 1 983 -37 220 363 71 18 chr15 94590751 94591032 -6789489 + L2 LINE L2 2419 2714 -600 429 227 18 18 chr15 94591150 94591260 -6789261 - MER103 DNA DNA -48 118 9 233 327 239 0 chr15 94591630 94591743 -6788778 + L2 LINE L2 3124 3263 -9 309 224 145 0 chr15 94592309 94592385 -6788136 + MIR SINE MIR 63 149 -113 209 327 0 0 chr15 94592402 94592457 -6788064 + L2 LINE L2 3210 3264 -8 1686 162 7 7 chr15 94593654 94593932 -6786589 - AluJb SINE Alu -24 288 11 377 279 107 7 chr15 94594777 94594917 -6785604 + MER91A DNA MER1_type 1 154 -42 2420 60 2 0 chr15 94595151 94595463 -6785058 - L1PA4 LINE L1 -169 5986 5668 307 259 89 27 chr15 94595640 94595752 -6784769 - MIR SINE MIR -75 187 69 204 262 179 12 chr15 94595819 94595903 -6784618 + L2 LINE L2 3170 3267 -5 2313 124 39 36 chr15 94596922 94597285 -6783236 + THE1B LTR MaLR 1 364 0 2112 130 10 3 chr15 94598000 94598308 -6782213 + AluSx SINE Alu 1 310 -2 1465 155 26 113 chr15 94600319 94600502 -6780019 + L1MA9 LINE L1 5953 6150 -162 294 29 0 0 chr15 94600502 94600537 -6779984 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1465 155 26 113 chr15 94600537 94600548 -6779973 + L1MA9 LINE L1 6150 6160 -152 1877 124 23 0 chr15 94600548 94600813 -6779708 - AluSx SINE Alu -41 271 1 1465 155 26 113 chr15 94600813 94600960 -6779561 + L1MA9 LINE L1 6160 6260 -52 1691 144 69 0 chr15 94600960 94601237 -6779284 - AluJb SINE Alu -16 296 1 1465 155 26 113 chr15 94601237 94601281 -6779240 + L1MA9 LINE L1 6260 6306 -6 650 328 25 86 chr15 94602243 94602718 -6777803 - L2 LINE L2 0 3272 2827 189 302 186 7 chr15 94602807 94602982 -6777539 - MIR3 SINE MIR -21 241 27 285 29 0 0 chr15 94602982 94603016 -6777505 + (CAGCC)n Simple_repeat Simple_repeat 4 37 0 189 302 186 7 chr15 94603016 94603048 -6777473 - MIR3 SINE MIR -235 27 2 524 285 40 20 chr15 94603267 94603467 -6777054 + MIR SINE MIR 3 206 -56 187 316 0 13 chr15 94604212 94604288 -6776233 + MIR SINE MIR 185 259 -3 219 351 10 7 chr15 94604290 94604433 -6776088 - MIR SINE MIR -1 207 63 448 254 87 16 chr15 94604581 94604707 -6775814 + L2 LINE L2 3137 3271 -1 203 216 20 20 chr15 94605356 94605407 -6775114 + MIR SINE MIR 96 146 -62 2423 68 0 0 chr15 94608198 94608492 -6772029 + AluSc SINE Alu 1 294 -15 266 0 29 0 chr15 94608544 94608578 -6771943 + (CAA)n Simple_repeat Simple_repeat 2 36 0 630 228 37 63 chr15 94609269 94609458 -6771063 - MIR SINE MIR 0 262 79 2077 130 24 0 chr15 94609852 94609981 -6770540 + AluSx SINE Alu 1 125 -187 342 0 0 0 chr15 94609981 94610019 -6770502 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2077 130 24 0 chr15 94610019 94610181 -6770340 + AluSx SINE Alu 125 299 -13 588 247 27 55 chr15 94610181 94610400 -6770121 - MLT1K LTR MaLR -15 573 361 333 352 8 8 chr15 94610436 94610564 -6769957 - MLT1K LTR MaLR -295 293 166 234 256 0 0 chr15 94611756 94611834 -6768687 + (TA)n Simple_repeat Simple_repeat 1 78 0 397 283 2 19 chr15 94612144 94612261 -6768260 - MIR SINE MIR -77 131 14 1845 167 55 12 chr15 94612275 94612604 -6767917 + MER61A LTR ERV1 1 343 0 1106 155 12 0 chr15 94613487 94613655 -6766866 - AluSg/x SINE Alu -8 304 135 2087 125 27 0 chr15 94613656 94613953 -6766568 - AluSx SINE Alu -7 305 1 818 133 47 23 chr15 94614071 94614199 -6766322 + FLAM_C SINE Alu 1 131 -2 1306 190 22 30 chr15 94614208 94614477 -6766044 + AluJo SINE Alu 19 285 -27 2429 81 3 0 chr15 94616028 94616326 -6764195 - AluSp SINE Alu -14 299 1 255 61 0 0 chr15 94617387 94617420 -6763101 + (TG)n Simple_repeat Simple_repeat 2 34 0 892 311 133 45 chr15 94619004 94619981 -6760540 - L1M4 LINE L1 -2350 3796 2734 351 0 0 0 chr15 94620053 94620092 -6760429 + (CA)n Simple_repeat Simple_repeat 2 40 0 2171 114 0 7 chr15 94620179 94620476 -6760045 - AluSg SINE Alu -15 295 1 455 83 0 0 chr15 94620539 94620599 -6759922 - Alu SINE Alu -10 301 242 253 262 117 10 chr15 94620810 94620913 -6759608 - L1M4 LINE L1 -3900 2246 2133 806 173 0 8 chr15 94621644 94621777 -6758744 - FLAM_C SINE Alu 0 133 2 210 71 0 0 chr15 94621876 94621904 -6758617 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 638 240 49 33 chr15 94621913 94622096 -6758425 - LTR16A LTR ERVL 0 450 265 275 316 77 17 chr15 94622333 94622567 -6757954 - HAL1 LINE L1 -1163 1344 1097 186 304 70 26 chr15 94623327 94623442 -6757079 + L2 LINE L2 3176 3295 -18 386 286 170 11 chr15 94623695 94623877 -6756644 + MIR SINE MIR 41 251 -11 444 274 0 0 chr15 94624419 94624521 -6756000 + MIR SINE MIR 23 124 -138 233 270 48 0 chr15 94624553 94624616 -6755905 - MIR SINE MIR -40 222 157 1854 126 20 50 chr15 94624619 94624921 -6755600 + AluSx SINE Alu 1 293 -19 228 265 15 29 chr15 94624937 94625005 -6755516 + MIR SINE MIR 173 239 -23 5775 124 14 4 chr15 94625195 94626441 -6754080 - L1PA16 LINE L1 -1 6165 4903 1758 143 60 23 chr15 94627270 94627570 -6752951 - AluJo SINE Alu -1 311 1 2119 148 0 0 chr15 94628294 94628605 -6751916 - AluSx SINE Alu -1 311 1 197 234 102 47 chr15 94628887 94629015 -6751506 + L3b LINE CR1 1183 1317 -266 494 311 95 56 chr15 94629295 94629904 -6750617 - L2 LINE L2 -308 3005 2369 413 328 33 0 chr15 94629970 94630092 -6750429 + L2 LINE L2 3181 3306 -7 1858 169 3 3 chr15 94630456 94630758 -6749763 + AluJb SINE Alu 1 302 -10 370 322 12 78 chr15 94631776 94632034 -6748487 - MIR SINE MIR -6 256 16 214 354 42 21 chr15 94632813 94632909 -6747612 - MIR SINE MIR -86 122 25 1922 144 10 20 chr15 94633249 94633555 -6746966 + AluSx SINE Alu 1 303 -9 245 264 132 50 chr15 94633601 94633722 -6746799 + MER5A DNA MER1_type 16 146 -43 429 267 20 0 chr15 94633756 94633857 -6746664 + MER5A DNA MER1_type 10 112 -77 246 218 81 89 chr15 94633933 94634057 -6746464 - L3 LINE CR1 -1158 419 297 2437 82 3 3 chr15 94634453 94634757 -6745764 + AluSp SINE Alu 1 304 -9 1989 150 0 3 chr15 94635002 94635315 -6745206 - AluSx SINE Alu 0 312 1 24 32 0 0 chr15 94635318 94635349 -6745172 + AT_rich Low_complexity Low_complexity 1 31 0 318 302 28 0 chr15 94635475 94635581 -6744940 - L1ME LINE L1 -303 5818 5710 2323 110 3 0 chr15 94636182 94636483 -6744038 - AluSp SINE Alu -8 305 4 1737 169 3 16 chr15 94636821 94637134 -6743387 + AluJo SINE Alu 1 309 -3 236 323 20 10 chr15 94637730 94637829 -6742692 - L2 LINE L2 -1889 1425 1326 235 204 19 0 chr15 94637888 94637942 -6742579 + L1MC4a LINE L1 5582 5636 -534 440 367 28 8 chr15 94638019 94638267 -6742254 + L1MC4a LINE L1 5669 5921 -1887 189 196 0 0 chr15 94638596 94638647 -6741874 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 2411 81 3 0 chr15 94638906 94639203 -6741318 + AluSg SINE Alu 1 298 -12 250 326 11 0 chr15 94641665 94641760 -6738761 - MER103 DNA DNA -49 117 22 927 162 5 42 chr15 94642496 94642687 -6737834 - MER5A DNA MER1_type -3 186 3 369 329 13 18 chr15 94642694 94642853 -6737668 + MER5A DNA MER1_type 1 160 -18 344 219 79 35 chr15 94645319 94645433 -6735088 + MIR SINE MIR 23 141 -67 225 261 0 0 chr15 94646855 94646901 -6733620 + polypyrimidine Low_complexity Low_complexity 2 47 0 225 180 0 0 chr15 94648060 94648110 -6732411 + A-rich Low_complexity Low_complexity 1 50 0 408 322 51 55 chr15 94648880 94649116 -6731405 - MIR SINE MIR -26 236 2 2098 99 0 14 chr15 94649311 94649617 -6730904 + AluSg SINE Alu 2 303 0 223 241 71 85 chr15 94649837 94649978 -6730543 + L2 LINE L2 2926 3064 -249 2126 96 16 48 chr15 94650387 94650700 -6729821 - AluSp SINE Alu -10 303 1 218 182 0 0 chr15 94650847 94650891 -6729630 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 245 367 0 0 chr15 94650923 94650983 -6729538 - L2 LINE L2 -79 3193 3134 416 362 22 31 chr15 94651169 94651398 -6729123 - L2 LINE L2 -363 2951 2725 1933 128 43 0 chr15 94651656 94651938 -6728583 - AluJb SINE Alu -18 294 1 325 309 45 9 chr15 94652232 94652342 -6728179 + L2 LINE L2 3136 3249 -23 667 225 22 45 chr15 94652710 94652932 -6727589 + L1MD3 LINE L1 6136 7984 -7 21 57 0 0 chr15 94654676 94654711 -6725810 + AT_rich Low_complexity Low_complexity 1 35 0 207 267 0 0 chr15 94654725 94654770 -6725751 + (TG)n Simple_repeat Simple_repeat 1 45 0 245 374 99 11 chr15 94656037 94656219 -6724302 + MIR SINE MIR 15 212 -50 2039 145 0 0 chr15 94656294 94656591 -6723930 - AluSx SINE Alu -15 297 1 219 420 19 14 chr15 94656605 94656817 -6723704 + L2 LINE L2 2765 2977 -337 2150 120 0 29 chr15 94657041 94657349 -6723172 - AluSx SINE Alu 0 312 14 383 250 18 0 chr15 94657430 94657542 -6722979 - Charlie8 DNA MER1_type -2225 192 79 291 277 58 96 chr15 94657630 94657818 -6722703 + L2 LINE L2 3073 3253 -19 2214 120 0 0 chr15 94658326 94658635 -6721886 - AluSg SINE Alu -1 309 1 306 257 64 0 chr15 94658662 94658771 -6721750 + L1ME4a LINE L1 5605 5720 -401 1261 131 223 18 chr15 94658783 94659012 -6721509 + AluSg1 SINE Alu 1 276 -33 1401 56 0 0 chr15 94659014 94659193 -6721328 + (GAA)n Simple_repeat Simple_repeat 2 180 0 512 258 15 15 chr15 94659363 94659495 -6721026 - MIR SINE MIR -108 154 23 2443 113 28 0 chr15 94659896 94660250 -6720271 + THE1B LTR MaLR 1 364 0 227 264 165 0 chr15 94660464 94660585 -6719936 + L1ME4a LINE L1 5964 6104 -17 192 40 0 0 chr15 94660970 94660995 -6719526 + (TG)n Simple_repeat Simple_repeat 2 26 0 244 298 32 21 chr15 94661388 94661482 -6719039 - MIR SINE MIR -57 205 111 450 293 37 85 chr15 94661592 94661838 -6718683 - MIR SINE MIR -21 241 8 420 247 51 62 chr15 94662274 94662452 -6718069 - MIR SINE MIR -66 196 21 222 277 31 0 chr15 94662573 94662638 -6717883 - L2 LINE L2 0 3313 3247 439 275 141 34 chr15 94662686 94662948 -6717573 + L2 LINE L2 3022 3311 -2 2123 125 0 13 chr15 94664251 94664555 -6715966 + AluSx SINE Alu 1 300 -12 488 366 85 0 chr15 94665256 94665480 -6715041 + MIR SINE MIR 18 260 -2 263 248 69 10 chr15 94665562 94665663 -6714858 - L1ME LINE L1 -513 5608 5502 222 304 0 0 chr15 94665694 94665763 -6714758 + A-rich Low_complexity Low_complexity 1 69 0 221 213 16 16 chr15 94666278 94666311 -6714210 + A-rich Low_complexity Low_complexity 4 39 -25 2100 118 0 19 chr15 94666311 94666625 -6713896 + AluSg SINE Alu 3 310 0 221 213 16 16 chr15 94666625 94666652 -6713869 + A-rich Low_complexity Low_complexity 38 64 0 1910 82 11 32 chr15 94666900 94667179 -6713342 - AluSc SINE Alu 0 309 37 324 302 60 0 chr15 94667461 94667577 -6712944 + MIR SINE MIR 60 182 -80 21 0 0 0 chr15 94667868 94667889 -6712632 + AT_rich Low_complexity Low_complexity 1 21 0 1593 144 21 0 chr15 94668532 94668775 -6711746 + AluSq SINE Alu 1 248 -65 1212 163 34 5 chr15 94668782 94668991 -6711530 + AluJo SINE Alu 97 311 -1 237 314 78 39 chr15 94669444 94669546 -6710975 - L2 LINE L2 -14 3258 3153 2148 109 34 0 chr15 94670667 94670961 -6709560 + AluSg1 SINE Alu 1 304 -5 307 333 0 0 chr15 94670975 94671059 -6709462 - MIR3 SINE MIR -49 159 76 332 243 211 8 chr15 94671339 94671489 -6709032 - MIR3 SINE MIR -16 192 13 259 282 32 8 chr15 94673683 94673807 -6706714 + L1ME4a LINE L1 4124 4250 -1896 869 211 18 12 chr15 94674109 94674280 -6706241 - AluJo SINE Alu -19 293 122 437 289 124 50 chr15 94674532 94674895 -6705626 + L1ME4a LINE L1 4979 5368 -778 1877 158 3 25 chr15 94675321 94675638 -6704883 + AluJb SINE Alu 1 310 -2 402 315 33 22 chr15 94675651 94675927 -6704594 + L1ME4a LINE L1 5817 6095 -26 368 283 93 44 chr15 94678013 94678218 -6702303 - MIR SINE MIR -2 260 46 23 33 0 0 chr15 94679619 94679649 -6700872 + AT_rich Low_complexity Low_complexity 1 30 0 226 291 70 0 chr15 94680113 94680199 -6700322 - L2 LINE L2 -22 3291 3200 1026 211 22 9 chr15 94680230 94680457 -6700064 - MIR SINE MIR -21 241 12 225 292 227 42 chr15 94680540 94680756 -6699765 + L3 LINE CR1 628 883 -694 465 286 146 57 chr15 94680825 94680896 -6699625 + L3 LINE CR1 1036 1099 -478 2356 28 42 0 chr15 94680896 94681180 -6699341 + AluY SINE Alu 1 296 -15 465 286 146 57 chr15 94681180 94681478 -6699043 + L3 LINE CR1 1099 1438 -139 243 290 14 14 chr15 94681623 94681692 -6698829 + L3 LINE CR1 1506 1574 -3 1711 162 0 20 chr15 94682362 94682658 -6697863 - AluJb SINE Alu -22 290 1 430 256 137 0 chr15 94684080 94684197 -6696324 + MIR SINE MIR 75 207 -55 755 256 65 30 chr15 94684895 94685125 -6695396 + MIR SINE MIR 4 241 -21 1111 173 0 0 chr15 94685237 94685434 -6695087 + AluSg/x SINE Alu 113 309 -3 1886 125 13 16 chr15 94685902 94686207 -6694314 - AluSc SINE Alu -5 304 1 1067 236 148 49 chr15 94686701 94686842 -6693679 + MLT1G LTR MaLR 10 136 -454 2269 90 0 0 chr15 94686842 94687152 -6693369 + AluSx SINE Alu 1 310 -2 1067 236 148 49 chr15 94687152 94687536 -6692985 + MLT1G LTR MaLR 136 587 -3 372 77 0 0 chr15 94687679 94687731 -6692790 + (TC)n Simple_repeat Simple_repeat 2 53 0 22 0 0 0 chr15 94688445 94688467 -6692054 + AT_rich Low_complexity Low_complexity 1 22 0 306 73 0 0 chr15 94689936 94689977 -6690544 + (CA)n Simple_repeat Simple_repeat 1 41 0 195 184 0 0 chr15 94692724 94692762 -6687759 + (TA)n Simple_repeat Simple_repeat 2 39 0 213 65 0 0 chr15 94695567 94695598 -6684923 + (T)n Simple_repeat Simple_repeat 1 31 0 241 250 0 0 chr15 94695871 94695923 -6684598 + CT-rich Low_complexity Low_complexity 3 54 0 21 0 0 0 chr15 94697224 94697245 -6683276 + GC_rich Low_complexity Low_complexity 1 21 0 228 193 18 18 chr15 94702139 94702196 -6678325 + GA-rich Low_complexity Low_complexity 2 58 0 207 0 0 0 chr15 94705508 94705531 -6674990 + (CGG)n Simple_repeat Simple_repeat 1 23 0 22 56 0 0 chr15 94705557 94705593 -6674928 + GC_rich Low_complexity Low_complexity 1 36 0 352 203 0 35 chr15 94706150 94706293 -6674228 + (CGG)n Simple_repeat Simple_repeat 2 139 0 30 45 0 0 chr15 94706365 94706409 -6674112 + GC_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr15 94706492 94706520 -6674001 + GC_rich Low_complexity Low_complexity 1 28 0 408 104 0 0 chr15 94706642 94706709 -6673812 + (TCC)n Simple_repeat Simple_repeat 1 67 0 180 184 0 0 chr15 94706738 94706787 -6673734 + GA-rich Low_complexity Low_complexity 2 50 0 228 310 0 14 chr15 94706850 94706921 -6673600 + C-rich Low_complexity Low_complexity 5 74 0 28 71 0 0 chr15 94707117 94707173 -6673348 + GC_rich Low_complexity Low_complexity 1 56 0 31 26 0 0 chr15 94707287 94707325 -6673196 + GC_rich Low_complexity Low_complexity 1 38 0 393 22 0 0 chr15 94712390 94712436 -6668085 + (TTC)n Simple_repeat Simple_repeat 3 48 0 213 213 0 21 chr15 94714726 94714773 -6665748 + GA-rich Low_complexity Low_complexity 3 48 0 189 0 0 0 chr15 94715762 94715783 -6664738 + (T)n Simple_repeat Simple_repeat 1 21 0 186 43 0 0 chr15 94716260 94716283 -6664238 + (CGGGGG)n Simple_repeat Simple_repeat 2 24 0 250 356 76 8 chr15 94767321 94767453 -6613068 - MIR SINE MIR -110 152 12 489 311 98 4 chr15 94768830 94769055 -6611466 - MIR SINE MIR 0 262 17 3642 147 45 50 chr15 94769204 94769652 -6610869 + L1MC2 LINE L1 5594 6038 -306 2195 118 16 7 chr15 94769652 94769958 -6610563 - AluSx SINE Alu -3 309 1 3642 147 45 50 chr15 94769958 94770262 -6610259 + L1MC2 LINE L1 6038 6342 -2 1622 163 58 10 chr15 94770427 94770722 -6609799 + AluJo SINE Alu 1 309 -3 2167 137 0 13 chr15 94770945 94771260 -6609261 - AluSx SINE Alu -1 311 1 301 336 0 10 chr15 94771351 94771455 -6609066 + GA-rich Low_complexity Low_complexity 1 103 0 240 208 0 0 chr15 94772431 94772479 -6608042 - MIR SINE MIR -106 156 109 437 337 140 5 chr15 94772842 94773506 -6607015 - L2 LINE L2 -1 3312 2520 225 0 0 0 chr15 94773529 94773554 -6606967 + (A)n Simple_repeat Simple_repeat 1 25 0 2204 90 17 10 chr15 94773810 94774111 -6606410 + AluY SINE Alu 1 303 -8 180 259 148 37 chr15 94774709 94774790 -6605731 - MIR SINE MIR 0 262 173 233 165 0 127 chr15 94774865 94774944 -6605577 + MLT1J2 LTR MaLR 96 164 -385 335 161 66 94 chr15 94775129 94775277 -6605244 + MLT1J2 LTR MaLR 361 450 0 847 305 92 39 chr15 94776708 94777173 -6603348 + L3 LINE CR1 129 618 -959 878 288 100 55 chr15 94777387 94777949 -6602572 + MLT1K LTR MaLR 2 588 0 626 352 101 12 chr15 94778733 94779151 -6601370 + L3 LINE CR1 667 1121 -456 1965 125 42 48 chr15 94779241 94779618 -6600903 - THE1C LTR MaLR 0 375 1 185 286 20 0 chr15 94779637 94779686 -6600835 - L2 LINE L2 -35 3237 3188 536 325 120 29 chr15 94779716 94780024 -6600497 + L3 LINE CR1 1144 1479 -98 224 333 14 14 chr15 94780298 94780370 -6600151 + L3b LINE CR1 1510 1581 -2 205 320 176 13 chr15 94781907 94782060 -6598461 - MIR SINE MIR -7 255 78 466 294 86 12 chr15 94782172 94782335 -6598186 - MIR SINE MIR -77 185 11 2049 131 3 3 chr15 94782414 94782726 -6597795 + AluSx SINE Alu 1 312 0 386 39 19 0 chr15 94784183 94784235 -6596286 + (TG)n Simple_repeat Simple_repeat 2 54 0 2314 93 0 0 chr15 94786303 94786614 -6593907 - AluSx SINE Alu -1 311 1 22 0 0 0 chr15 94787596 94787618 -6592903 + GC_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr15 94787967 94788016 -6592505 + GC_rich Low_complexity Low_complexity 1 49 0 29 28 0 0 chr15 94788240 94788276 -6592245 + AT_rich Low_complexity Low_complexity 1 36 0 360 0 0 0 chr15 94790074 94790114 -6590407 + (TA)n Simple_repeat Simple_repeat 2 41 0 317 276 262 0 chr15 94792184 94792329 -6588192 - MIR SINE MIR -43 219 37 1659 158 10 10 chr15 94792447 94792738 -6587783 - AluJo SINE Alu -1 311 21 363 275 319 16 chr15 94793067 94793249 -6587272 + MIR SINE MIR 17 253 -9 916 219 0 0 chr15 94793808 94793977 -6586544 + FAM SINE Alu 2 170 -5 1932 137 37 0 chr15 94794294 94794594 -6585927 - AluSq SINE Alu -2 311 1 309 316 58 15 chr15 94794628 94794782 -6585739 - MIR SINE MIR -49 213 55 758 280 34 13 chr15 94795039 94795278 -6585243 - MIR SINE MIR -2 260 17 408 121 0 0 chr15 94795478 94795544 -6584977 - Alu SINE Alu -8 304 239 710 316 170 11 chr15 94796565 94796941 -6583580 - L3b LINE CR1 -19 1564 1129 627 259 0 7 chr15 94797528 94797663 -6582858 - MIR SINE MIR -127 135 2 189 0 0 0 chr15 94798384 94798405 -6582116 + (A)n Simple_repeat Simple_repeat 1 21 0 248 280 0 0 chr15 94800318 94800368 -6580153 + G-rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr15 94800731 94800759 -6579762 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr15 94805619 94805639 -6574882 + (T)n Simple_repeat Simple_repeat 1 20 0 761 251 43 5 chr15 94806505 94806692 -6573829 + MIR SINE MIR 69 262 0 23 68 0 0 chr15 94809418 94809462 -6571059 + AT_rich Low_complexity Low_complexity 1 44 0 25 51 0 0 chr15 94810407 94810446 -6570075 + AT_rich Low_complexity Low_complexity 1 39 0 4201 92 17 2 chr15 94810934 94811531 -6568990 + L1MA2 LINE L1 5699 6304 0 240 213 62 88 chr15 94811876 94811956 -6568565 + L3 LINE CR1 1329 1406 -171 229 208 0 117 chr15 94812030 94812107 -6568414 - MER5B DNA MER1_type 0 178 111 472 266 29 104 chr15 94812555 94812796 -6567725 - MER102b DNA MER1_type 0 341 119 271 263 219 51 chr15 94812925 94813062 -6567459 - MER5A DNA MER1_type -15 174 15 504 296 101 15 chr15 94813388 94813587 -6566934 - MIR SINE MIR -27 235 20 286 103 0 0 chr15 94816643 94816682 -6563839 + MIR SINE MIR 216 254 -8 248 102 20 0 chr15 94818088 94818137 -6562384 + (CA)n Simple_repeat Simple_repeat 2 51 0 231 286 12 12 chr15 94818228 94818312 -6562209 + C-rich Low_complexity Low_complexity 6 89 0 256 250 15 0 chr15 94819020 94819088 -6561433 + CT-rich Low_complexity Low_complexity 2 70 0 243 323 0 0 chr15 94819274 94819336 -6561185 + G-rich Low_complexity Low_complexity 4 65 0 189 74 0 0 chr15 94819337 94819364 -6561157 + (GA)n Simple_repeat Simple_repeat 2 28 0 223 206 0 33 chr15 94821500 94821592 -6558929 + CT-rich Low_complexity Low_complexity 2 90 0 306 0 0 0 chr15 94821636 94821670 -6558851 + (TG)n Simple_repeat Simple_repeat 1 34 0 324 111 0 0 chr15 94821670 94821724 -6558797 + (GA)n Simple_repeat Simple_repeat 2 55 0 189 0 0 0 chr15 94824462 94824483 -6556038 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 22 35 0 0 chr15 94825151 94825180 -6555341 + GC_rich Low_complexity Low_complexity 1 29 0 195 100 0 0 chr15 94826042 94826072 -6554449 + (T)n Simple_repeat Simple_repeat 1 30 0 995 203 183 16 chr15 94828241 94828487 -6552034 - AluSg SINE Alu -9 291 5 1790 154 0 10 chr15 94828526 94828824 -6551697 + AluJo SINE Alu 2 296 -16 2153 103 0 3 chr15 94829021 94829322 -6551199 + AluSg SINE Alu 1 300 -10 418 236 36 9 chr15 94829764 94829874 -6550647 - MLT1J LTR MaLR 0 511 399 772 181 0 0 chr15 94829894 94830043 -6550478 + L1ME LINE L1 4612 4760 -1386 1867 116 0 44 chr15 94830066 94830341 -6550180 - AluSx SINE Alu -49 263 1 219 36 0 0 chr15 94830355 94830383 -6550138 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1530 187 10 17 chr15 94830386 94830675 -6549846 - AluJo SINE Alu -25 287 1 586 286 71 0 chr15 94832484 94832666 -6547855 - MIR SINE MIR -21 241 47 27 29 0 0 chr15 94832938 94832972 -6547549 + AT_rich Low_complexity Low_complexity 1 34 0 304 253 44 11 chr15 94833092 94833183 -6547338 - L1MC4 LINE L1 -1339 6703 6610 544 246 77 48 chr15 94834014 94834286 -6546235 + L1ME LINE L1 5529 5808 -313 1927 130 3 3 chr15 94834633 94834956 -6545565 + AluSx SINE Alu 1 323 0 244 263 197 32 chr15 94835055 94835217 -6545304 + MLT1J2 LTR MaLR 27 175 -275 1994 124 7 10 chr15 94835424 94835730 -6544791 - AluSx SINE Alu -5 307 3 5169 118 26 11 chr15 94835735 94836620 -6543901 - L1PB2 LINE L1 0 6151 5254 447 313 28 63 chr15 94836625 94836989 -6543532 - HAL1 LINE L1 -2132 375 25 291 292 80 26 chr15 94837978 94838091 -6542430 + MIR SINE MIR 110 228 -34 1806 180 0 7 chr15 94838901 94839201 -6541320 + AluJo SINE Alu 3 300 -12 2056 118 7 0 chr15 94839405 94839725 -6540796 - AluSx SINE Alu 0 324 3 233 89 22 0 chr15 94840074 94840119 -6540402 + (TA)n Simple_repeat Simple_repeat 1 46 0 5100 116 0 0 chr15 94841592 94842255 -6538266 - L1PA10 LINE L1 0 6168 5491 2198 119 0 0 chr15 94842255 94842548 -6537973 - AluSq SINE Alu -20 293 1 5100 116 0 0 chr15 94842548 94842940 -6537581 - L1PA10 LINE L1 -676 5492 5101 1695 180 10 84 chr15 94842991 94843385 -6537136 - MLT1A1 LTR MaLR 0 365 1 205 329 26 13 chr15 94844221 94844297 -6536224 + MIR SINE MIR 40 116 -92 315 104 0 0 chr15 94844456 94844504 -6536017 + (TC)n Simple_repeat Simple_repeat 1 48 0 259 273 45 15 chr15 94844876 94844942 -6535579 + MER91A DNA MER1_type 121 188 -8 735 191 109 0 chr15 94845011 94845158 -6535363 - AluJo SINE Alu -2 300 138 265 236 0 0 chr15 94846307 94846362 -6534159 + LTR16B LTR ERVL 403 457 -7 1952 130 22 0 chr15 94846522 94846799 -6533722 - AluSx SINE Alu -27 285 3 567 24 24 12 chr15 94846817 94846899 -6533622 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 795 170 0 15 chr15 94846928 94847063 -6533458 - AluJo SINE Alu -169 133 1 252 0 0 0 chr15 94847651 94847679 -6532842 + (A)n Simple_repeat Simple_repeat 1 28 0 306 125 0 0 chr15 94850385 94850433 -6530088 + (A)n Simple_repeat Simple_repeat 1 48 0 460 241 9 43 chr15 94850554 94850670 -6529851 - MER5B DNA MER1_type -1 177 66 184 274 48 0 chr15 94850796 94850858 -6529663 + MIR SINE MIR 75 139 -69 1762 193 0 7 chr15 94851903 94852209 -6528312 + AluSx SINE Alu 3 306 -6 306 0 0 0 chr15 94852348 94852382 -6528139 + (TG)n Simple_repeat Simple_repeat 2 35 0 247 263 35 0 chr15 94852428 94852485 -6528036 + MER5A DNA MER1_type 131 189 0 189 0 0 0 chr15 94853241 94853262 -6527259 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2023 82 8 0 chr15 94853264 94853531 -6526990 - AluSc SINE Alu -32 277 9 227 321 0 12 chr15 94853867 94853951 -6526570 + MIR SINE MIR 152 234 -28 285 29 0 0 chr15 94854806 94854840 -6525681 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 181 321 36 0 chr15 94855300 94855384 -6525137 - MIR SINE MIR -23 239 153 246 174 0 0 chr15 94855397 94855443 -6525078 + (CA)n Simple_repeat Simple_repeat 1 46 0 1026 168 0 67 chr15 94856367 94856575 -6523946 - AluJo SINE Alu -7 305 112 211 225 0 125 chr15 94857596 94857676 -6522845 + L3 LINE CR1 1244 1313 -264 1742 144 48 45 chr15 94858180 94858554 -6521967 - THE1C LTR MaLR 0 375 1 456 317 19 15 chr15 94858575 94858780 -6521741 - MER57B LTR ERV1 -166 268 63 2080 150 0 0 chr15 94859641 94859935 -6520586 - AluSx SINE Alu -16 296 3 287 238 12 0 chr15 94859975 94860055 -6520466 - HAL1 LINE L1 -309 2198 2118 1592 266 102 73 chr15 94860061 94860278 -6520243 - HAL1 LINE L1 -556 1951 1742 5510 47 1 0 chr15 94860278 94860948 -6519573 - L1PA5 LINE L1 -1 6153 5480 2029 148 21 29 chr15 94860948 94861326 -6519195 - THE1C LTR MaLR 0 375 1 1592 266 102 73 chr15 94861332 94862451 -6518070 - HAL1 LINE L1 -765 1742 576 324 299 117 29 chr15 94862451 94862588 -6517933 + L1MA5 LINE L1 852 1000 -5779 4381 216 16 16 chr15 94862654 94863815 -6516706 + L1MA5 LINE L1 1443 2603 -4246 * 10367 170 32 40 chr15 94863810 94865582 -6514939 + L1MA5 LINE L1 3529 5314 -1688 1272 219 30 10 chr15 94865582 94865884 -6514637 + AluJo SINE Alu 3 310 -2 10367 170 32 40 chr15 94865884 94866266 -6514255 + L1MA5 LINE L1 5314 5698 -1304 2029 127 0 0 chr15 94866266 94866542 -6513979 + AluSx SINE Alu 1 276 -36 10367 170 32 40 chr15 94866542 94867506 -6513015 + L1MA5 LINE L1 5698 6632 -370 313 268 52 21 chr15 94867574 94867671 -6512850 - L2 LINE L2 -20 3293 3194 368 252 59 8 chr15 94869038 94869157 -6511364 + MIR3 SINE MIR 12 136 -72 259 233 89 0 chr15 94871530 94871620 -6508901 - MIR SINE MIR -24 238 141 24 32 0 0 chr15 94871790 94871821 -6508700 + AT_rich Low_complexity Low_complexity 1 31 0 186 281 0 0 chr15 94872523 94872587 -6507934 + (CATATA)n Simple_repeat Simple_repeat 1 64 0 22 0 0 0 chr15 94873248 94873270 -6507251 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr15 94873347 94873378 -6507143 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr15 94873504 94873538 -6506983 + AT_rich Low_complexity Low_complexity 1 34 0 239 129 29 29 chr15 94874181 94874251 -6506270 + (TA)n Simple_repeat Simple_repeat 2 71 0 35 24 0 0 chr15 94874422 94874464 -6506057 + AT_rich Low_complexity Low_complexity 1 42 0 195 69 0 0 chr15 94877577 94877606 -6502915 + (CATAC)n Simple_repeat Simple_repeat 1 29 0 288 276 0 13 chr15 94882741 94882817 -6497704 + CT-rich Low_complexity Low_complexity 2 76 0 716 194 0 11 chr15 94884505 94884680 -6495841 + GA-rich Low_complexity Low_complexity 4 176 0 264 149 0 0 chr15 94884783 94884830 -6495691 + (TC)n Simple_repeat Simple_repeat 1 47 0 1578 133 109 0 chr15 94884830 94885086 -6495435 - AluJo SINE Alu -27 285 2 1425 176 86 8 chr15 94885678 94885945 -6494576 + AluJo SINE Alu 1 288 -24 26 0 0 0 chr15 94885948 94885974 -6494547 + AT_rich Low_complexity Low_complexity 1 26 0 304 271 71 0 chr15 94886663 94886748 -6493773 + L2 LINE L2 3161 3251 -21 267 236 0 0 chr15 94886772 94886844 -6493677 + GA-rich Low_complexity Low_complexity 4 75 0 1928 111 15 68 chr15 94886864 94887189 -6493332 + AluSx SINE Alu 5 312 0 22 0 0 0 chr15 94887304 94887326 -6493195 + AT_rich Low_complexity Low_complexity 1 22 0 751 249 46 5 chr15 94889783 94890000 -6490521 + MIR SINE MIR 31 256 -6 264 308 58 72 chr15 94890196 94890488 -6490033 + L2 LINE L2 2899 3186 -86 500 278 98 6 chr15 94891239 94891455 -6489066 - MIR SINE MIR -30 232 2 247 315 0 40 chr15 94891484 94891609 -6488912 + MIR SINE MIR 45 163 -63 1696 172 27 7 chr15 94891728 94892024 -6488497 + AluJb SINE Alu 1 302 -10 432 300 35 47 chr15 94892747 94892917 -6487604 + MLT1K LTR MaLR 10 177 -411 638 304 116 4 chr15 94893010 94893260 -6487261 + MLT1K LTR MaLR 308 585 -3 2427 121 0 19 chr15 94894538 94894909 -6485612 - L1PA16 LINE L1 0 6166 5803 717 191 0 0 chr15 94895240 94895376 -6485145 - AluJb SINE Alu 0 312 177 493 261 72 77 chr15 94895404 94895754 -6484767 - L1M4 LINE L1 -945 5201 4852 2069 121 0 22 chr15 94895754 94896067 -6484454 + AluSc SINE Alu 1 306 -3 493 261 72 77 chr15 94896067 94896160 -6484361 - L1M4 LINE L1 -1294 4852 4760 1956 139 0 14 chr15 94896160 94896469 -6484052 - AluJo SINE Alu 0 305 1 403 239 53 18 chr15 94896593 94896706 -6483815 + MIR3 SINE MIR 41 157 -51 889 283 28 79 chr15 94896711 94897142 -6483379 + MLT1I LTR MaLR 1 409 0 227 79 26 0 chr15 94897717 94897755 -6482766 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1232 229 15 11 chr15 94898130 94898396 -6482125 + AluJo SINE Alu 45 311 -1 420 55 0 0 chr15 94898405 94898460 -6482061 + (GGAA)n Simple_repeat Simple_repeat 4 58 0 1664 98 5 0 chr15 94899027 94899241 -6481280 + AluSg/x SINE Alu 78 292 -18 1711 189 3 7 chr15 94899253 94899544 -6480977 - AluJb SINE Alu -20 292 3 279 133 0 0 chr15 94899546 94899591 -6480930 + (T)n Simple_repeat Simple_repeat 1 45 0 982 135 6 41 chr15 94899675 94899845 -6480676 + FRAM SINE Alu 1 159 -17 368 304 36 0 chr15 94899849 94899987 -6480534 - MIR3 SINE MIR -43 165 23 23 0 0 0 chr15 94900486 94900509 -6480012 + AT_rich Low_complexity Low_complexity 1 23 0 185 210 0 81 chr15 94900516 94900578 -6479943 - L2 LINE L2 0 3313 3257 1506 210 176 46 chr15 94900596 94901096 -6479425 - MLT1F1 LTR MaLR 0 567 3 1391 163 52 75 chr15 94901102 94901234 -6479287 + AluJo SINE Alu 1 134 -178 2324 102 3 6 chr15 94901234 94901547 -6478974 + AluSp SINE Alu 1 312 -1 1391 163 52 75 chr15 94901547 94901560 -6478961 + AluJo SINE Alu 134 146 -166 6858 47 42 3 chr15 94901560 94903006 -6477515 + L1PA5 LINE L1 4671 6153 -1 1391 163 52 75 chr15 94903006 94903165 -6477356 + AluJo SINE Alu 146 299 -13 23 78 0 0 chr15 94904452 94904503 -6476018 + AT_rich Low_complexity Low_complexity 1 51 0 1689 195 20 0 chr15 94905202 94905624 -6474897 + AluJo SINE Alu 1 428 0 774 176 0 0 chr15 94905670 94905789 -6474732 - FLAM_A SINE Alu -13 120 2 2127 104 35 0 chr15 94906625 94906912 -6473609 + AluSc SINE Alu 1 297 -12 1387 193 12 4 chr15 94906974 94907223 -6473298 - AluJb SINE Alu -61 251 1 298 284 102 0 chr15 94907740 94907867 -6472654 - L2 LINE L2 0 3272 3133 216 0 0 0 chr15 94907987 94908011 -6472510 + (T)n Simple_repeat Simple_repeat 1 24 0 1658 143 4 39 chr15 94908275 94908554 -6471967 + AluJo SINE Alu 11 279 -33 2122 130 0 3 chr15 94908671 94908979 -6471542 + AluSq SINE Alu 1 307 -6 344 318 32 8 chr15 94909224 94909350 -6471171 + L2 LINE L2 3141 3269 -3 2140 124 14 0 chr15 94910461 94910752 -6469769 - AluSx SINE Alu -17 295 1 547 261 12 18 chr15 94910758 94910923 -6469598 + MIR SINE MIR 26 189 -73 257 137 39 0 chr15 94911137 94911188 -6469333 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 180 0 0 0 chr15 94911239 94911259 -6469262 + (TG)n Simple_repeat Simple_repeat 1 20 0 268 273 8 33 chr15 94911321 94911442 -6469079 + MIR SINE MIR 38 155 -107 267 309 12 43 chr15 94911579 94911741 -6468780 + MIR SINE MIR 58 214 -48 2504 63 0 13 chr15 94913201 94913518 -6467003 - AluSq SINE Alu 0 313 1 1261 291 97 31 chr15 94918049 94918825 -6461696 + L2 LINE L2 1933 2759 -555 216 225 113 14 chr15 94919114 94919185 -6461336 + L2 LINE L2 3219 3296 -17 311 256 146 24 chr15 94920260 94920424 -6460097 - L1ME4a LINE L1 -5 6116 5933 36 40 0 0 chr15 94920830 94920880 -6459641 + AT_rich Low_complexity Low_complexity 1 50 0 1677 187 33 38 chr15 94921020 94921416 -6459105 - MSTD LTR MaLR 0 396 3 192 289 211 0 chr15 94922299 94922375 -6458146 - MIR SINE MIR -84 124 33 451 296 45 30 chr15 94922952 94923151 -6457370 + MIR SINE MIR 47 248 -14 339 288 104 27 chr15 94925911 94926133 -6454388 - MIR SINE MIR -10 252 14 21 0 0 0 chr15 94926567 94926588 -6453933 + AT_rich Low_complexity Low_complexity 1 21 0 208 353 118 7 chr15 94928139 94928292 -6452229 + MIR3 SINE MIR 12 181 -27 431 254 32 16 chr15 94929222 94929348 -6451173 - MER5B DNA MER1_type -14 164 37 255 315 0 0 chr15 94929980 94930053 -6450468 - MIR SINE MIR -10 252 180 325 297 0 0 chr15 94930408 94930499 -6450022 + LTR67 LTR ERVL 458 548 -9 339 274 57 8 chr15 94930508 94930632 -6449889 - MIR SINE MIR -77 185 56 471 278 171 20 chr15 94931948 94932200 -6448321 + L2 LINE L2 2851 3140 -173 905 131 0 0 chr15 94932237 94932359 -6448162 - FLAM_C SINE Alu -20 123 2 498 261 12 56 chr15 94932360 94932521 -6448000 + L2 LINE L2 3160 3313 0 2193 129 3 0 chr15 94932693 94933004 -6447517 + AluSx SINE Alu 1 312 0 1127 72 0 0 chr15 94935456 94935595 -6444926 + L1PA5 LINE L1 6016 6154 0 2168 97 22 0 chr15 94935867 94936178 -6444343 + AluSx SINE Alu 1 317 0 829 254 26 0 chr15 94936261 94936454 -6444067 - L1ME1 LINE L1 -5 6230 6033 2241 113 0 17 chr15 94936478 94936780 -6443741 - AluSg SINE Alu -11 299 3 2555 182 16 18 chr15 94936795 94937289 -6443232 - L1MA9 LINE L1 -38 6274 5782 254 186 21 93 chr15 94937312 94937409 -6443112 + L1MC4 LINE L1 6614 6703 -1339 263 71 71 0 chr15 94937459 94937501 -6443020 + L1M2 LINE L1 5777 5821 -491 298 0 48 0 chr15 94937517 94937559 -6442962 + (TA)n Simple_repeat Simple_repeat 2 45 0 2224 131 20 53 chr15 94937559 94937956 -6442565 - L1MA9 LINE L1 -532 5780 5397 * 2953 211 57 14 chr15 94937936 94938668 -6441853 - L1ME1 LINE L1 -186 6049 5293 1795 141 35 21 chr15 94938687 94938971 -6441550 - AluJo SINE Alu -24 288 1 319 161 185 39 chr15 94938971 94939101 -6441420 - L1ME1 LINE L1 -876 5339 5191 4132 261 62 25 chr15 94939118 94940700 -6439821 - L1ME1 LINE L1 -1249 4966 3327 2569 248 37 9 chr15 94940718 94941509 -6439012 - L1ME1 LINE L1 -2970 3245 2433 2323 167 3 0 chr15 94941527 94941904 -6438617 - MER57A LTR ERV1 -23 380 3 1505 232 130 15 chr15 94941909 94942447 -6438074 - L1ME1 LINE L1 -4138 2258 1659 1065 244 92 62 chr15 94942421 94942921 -6437600 - L1ME1 LINE L1 -5819 577 63 * 2255 120 0 16 chr15 94942931 94943248 -6437273 - AluSx SINE Alu 0 312 1 1098 284 67 7 chr15 94943320 94943764 -6436757 - L1ME3A LINE L1 -5 6165 5641 378 0 0 0 chr15 94943764 94943806 -6436715 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 1098 284 67 7 chr15 94943806 94943915 -6436606 - L1ME3A LINE L1 -529 5641 5540 1923 128 35 10 chr15 94944102 94944391 -6436130 + AluJb SINE Alu 1 296 -16 1891 137 0 31 chr15 94944678 94945016 -6435505 + AluSx SINE Alu 1 329 0 617 301 66 14 chr15 94945507 94945720 -6434801 + MIR SINE MIR 26 249 -13 624 164 0 17 chr15 94946973 94947089 -6433432 + 7SK RNA RNA 9 122 -71 361 214 0 0 chr15 94947127 94947197 -6433324 + 7SK RNA RNA 121 190 -3 182 342 35 9 chr15 94947206 94947320 -6433201 - MIR SINE MIR -81 181 65 218 284 123 0 chr15 94949167 94949248 -6431273 + MIR SINE MIR 101 191 -71 220 291 117 87 chr15 94949612 94949842 -6430679 + MIR SINE MIR 15 251 -11 448 301 114 32 chr15 94949854 94950293 -6430228 - L1ME1 LINE L1 -280 5886 5412 1481 231 89 16 chr15 94950714 94951139 -6429382 + Charlie1b DNA MER1_type 68 523 0 4286 127 105 123 chr15 94951350 94952783 -6427738 - pTR5 LTR ERV1 0 2438 741 314 264 32 72 chr15 94953512 94953571 -6426950 - L2 LINE L2 -42 3271 3218 1703 162 27 7 chr15 94953571 94953867 -6426654 + AluJb SINE Alu 1 302 -10 314 264 32 72 chr15 94953867 94953932 -6426589 - L2 LINE L2 -95 3218 3152 25 0 0 0 chr15 94954001 94954026 -6426495 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr15 94954086 94954117 -6426404 + AT_rich Low_complexity Low_complexity 1 31 0 994 198 0 0 chr15 94954239 94954406 -6426115 - FRAM SINE Alu -14 162 1 234 0 0 0 chr15 94954522 94954548 -6425973 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 635 249 49 25 chr15 94955406 94955651 -6424870 - LTR33 LTR ERVL 0 521 271 267 243 93 19 chr15 94955987 94956094 -6424427 + MLT1K LTR MaLR 471 585 -3 186 43 0 0 chr15 94956196 94956219 -6424302 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1846 128 3 46 chr15 94956226 94956530 -6423991 - AluSx SINE Alu -21 291 1 333 308 29 0 chr15 95006553 95006657 -6373864 - MIR SINE MIR -78 184 78 195 273 0 18 chr15 95008468 95008523 -6371998 + MIR SINE MIR 54 107 -101 675 269 61 14 chr15 95008701 95008913 -6371608 - MIR SINE MIR 0 262 41 4298 30 2 0 chr15 95009211 95009716 -6370805 + L1PA2 LINE L1 5637 6142 -13 197 33 33 0 chr15 95009719 95009749 -6370772 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 826 223 30 51 chr15 95009811 95009881 -6370640 + MLT1E1 LTR MaLR 407 330 -175 1740 191 0 6 chr15 95009881 95010195 -6370326 + AluSx SINE Alu 1 312 0 826 223 30 51 chr15 95010195 95010361 -6370160 + MLT1E1 LTR MaLR 329 497 -8 689 159 53 0 chr15 95010881 95011013 -6369508 - L1PA11 LINE L1 -2 6172 6034 436 291 159 13 chr15 95011347 95011811 -6368710 + L1M4 LINE L1 3746 4277 -1869 654 244 0 0 chr15 95013801 95013928 -6366593 + FLAM_C SINE Alu 1 127 -16 24 67 0 0 chr15 95014834 95014879 -6365642 + AT_rich Low_complexity Low_complexity 1 45 0 544 263 146 14 chr15 95015233 95015446 -6365075 - MIR SINE MIR -7 255 15 218 300 180 13 chr15 95016679 95016829 -6363692 - MER5A DNA MER1_type -14 175 1 690 282 40 36 chr15 95017556 95018003 -6362518 - L1ME4a LINE L1 -97 6024 5576 314 209 0 70 chr15 95018315 95018401 -6362120 - L1MA9 LINE L1 -33 6279 6200 486 232 72 0 chr15 95018692 95018830 -6361691 + MER104 DNA Tc2 30 177 -3 261 0 0 0 chr15 95019949 95019978 -6360543 + (CATTT)n Simple_repeat Simple_repeat 2 30 0 337 328 158 20 chr15 95020783 95021329 -6359192 + L2 LINE L2 219 839 -2475 260 325 98 24 chr15 95022624 95022747 -6357774 - MIR SINE MIR -110 152 21 331 244 11 22 chr15 95022798 95022888 -6357633 - L2 LINE L2 0 3313 3225 194 280 0 0 chr15 95026212 95026262 -6354259 - L2 LINE L2 0 3313 3264 324 197 68 68 chr15 95026907 95027024 -6353497 + MIR SINE MIR 36 152 -110 2226 114 0 0 chr15 95030177 95030467 -6350054 - AluSx SINE Alu -17 295 6 428 289 32 13 chr15 95030831 95030987 -6349534 + MIR SINE MIR 104 262 0 220 288 61 30 chr15 95032013 95032145 -6348376 + MIR SINE MIR 50 185 -77 332 273 8 41 chr15 95034275 95034396 -6346125 + MARNA DNA Mariner 452 568 -18 530 255 35 77 chr15 95034864 95035123 -6345398 - MER112 DNA MER1_type -7 253 6 1936 120 73 53 chr15 95035175 95035532 -6344989 - THE1B LTR MaLR 0 364 1 670 136 59 25 chr15 95036255 95036373 -6344148 + THE1C LTR MaLR 1 122 -253 620 152 9 9 chr15 95036358 95036463 -6344058 + THE1C LTR MaLR 271 375 0 * 415 259 141 0 chr15 95036541 95036726 -6343795 - MIR SINE MIR -12 250 40 284 295 128 13 chr15 95037185 95037341 -6343180 + L2 LINE L2 3112 3285 -28 1099 262 155 18 chr15 95039390 95039836 -6340685 - MLT1J LTR MaLR -4 507 1 252 0 0 0 chr15 95041428 95041456 -6339065 + (TTA)n Simple_repeat Simple_repeat 2 29 0 2185 86 4 0 chr15 95041459 95041728 -6338793 - AluSx SINE Alu -32 280 11 814 58 0 0 chr15 95041895 95041998 -6338523 - L1PA8 LINE L1 -206 5966 5864 292 278 113 0 chr15 95042623 95042738 -6337783 - MIR SINE MIR -54 208 81 28 48 0 0 chr15 95043373 95043415 -6337106 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr15 95043448 95043479 -6337042 + AT_rich Low_complexity Low_complexity 1 31 0 1443 87 0 20 chr15 95045329 95045525 -6334996 - MSTD LTR MaLR -204 192 1 280 250 0 40 chr15 95045563 95045663 -6334858 + L2 LINE L2 3218 3313 0 995 208 0 0 chr15 95045676 95045854 -6334667 + MER5B DNA MER1_type 1 178 0 370 256 192 8 chr15 95045871 95045996 -6334525 + MER5A DNA MER1_type 10 157 -32 216 167 0 0 chr15 95047404 95047452 -6333069 + (CA)n Simple_repeat Simple_repeat 1 48 0 366 248 74 0 chr15 95048541 95048662 -6331859 + MIR SINE MIR 49 178 -84 423 282 57 53 chr15 95049229 95049438 -6331083 - MLT1J LTR MaLR -131 380 171 1843 167 20 0 chr15 95050811 95051110 -6329411 - AluSx SINE Alu -7 305 1 1327 230 63 37 chr15 95051112 95051633 -6328888 - MLT1E2 LTR MaLR -1 504 1 451 307 171 49 chr15 95052890 95053404 -6327117 - L2 LINE L2 -466 2848 2272 354 197 127 0 chr15 95053535 95053606 -6326915 + MLT1H LTR MaLR 80 159 -390 2722 181 13 35 chr15 95053678 95054214 -6326307 + MER6A DNA MER2_type 2 525 -80 292 170 0 0 chr15 95054227 95054280 -6326241 - MER6 DNA MER2_type -80 785 733 406 165 82 35 chr15 95054283 95054368 -6326153 + MER6 DNA MER2_type 777 865 0 457 132 13 13 chr15 95057094 95057170 -6323351 - AluJ/FLAM SINE Alu -226 86 11 1348 232 40 14 chr15 95057183 95057532 -6322989 - L1M4 LINE L1 -1119 5027 4670 208 197 0 30 chr15 95057982 95058048 -6322473 + (TA)n Simple_repeat Simple_repeat 2 65 0 319 280 60 0 chr15 95058959 95059059 -6321462 - L2 LINE L2 -1 3312 3207 22 0 0 0 chr15 95059175 95059197 -6321324 + GC_rich Low_complexity Low_complexity 1 22 0 1411 115 7 7 chr15 95059641 95059909 -6320612 - L1P4 LINE L1 -674 5492 5225 550 214 108 118 chr15 95059910 95060353 -6320168 - MLT1G LTR MaLR 0 624 68 209 348 0 73 chr15 95061169 95061333 -6319188 + L2 LINE L2 3116 3267 -46 22 0 0 0 chr15 95061682 95061704 -6318817 + AT_rich Low_complexity Low_complexity 1 22 0 238 216 54 54 chr15 95111947 95112058 -6268463 - LTR33A LTR ERVL -2 521 411 2313 118 0 0 chr15 95112103 95112409 -6268112 + AluSx SINE Alu 1 306 -6 518 260 110 60 chr15 95112531 95112831 -6267690 - LTR50 LTR ERVL -478 317 3 2022 114 0 24 chr15 95113069 95113385 -6267136 - AluSx SINE Alu 0 309 1 283 296 0 0 chr15 95113544 95113632 -6266889 - MERVL LTR ERVL -158 5327 5240 1549 300 72 38 chr15 95113658 95114349 -6266172 - MERVL LTR ERVL -574 5190 4476 617 269 47 6 chr15 95115190 95115361 -6265160 + MIR SINE MIR 42 219 -43 378 341 147 32 chr15 95115601 95116164 -6264357 + L3 LINE CR1 943 1570 -7 2206 112 0 10 chr15 95118393 95118705 -6261816 + AluSc SINE Alu 1 309 0 663 103 0 28 chr15 95118731 95118838 -6261683 + AluSg/x SINE Alu 209 312 0 291 93 0 0 chr15 95119408 95119451 -6261070 + (GGA)n Simple_repeat Simple_repeat 3 45 0 25 75 0 0 chr15 95121267 95121320 -6259201 + AT_rich Low_complexity Low_complexity 1 53 0 1608 123 101 4 chr15 95121923 95122191 -6258330 - L1PA12 LINE L1 -299 5869 5576 2228 63 63 3 chr15 95122703 95122988 -6257533 + AluY SINE Alu 3 304 -7 22 35 0 0 chr15 95124023 95124052 -6256469 + AT_rich Low_complexity Low_complexity 1 29 0 183 294 314 0 chr15 95124624 95124726 -6255795 - MIR SINE MIR 0 262 129 223 139 116 0 chr15 95124773 95124816 -6255705 - L2 LINE L2 -1 3312 3265 312 276 53 0 chr15 95125522 95125598 -6254923 + MIR3 SINE MIR 118 197 -11 22 0 0 0 chr15 95126438 95126460 -6254061 + AT_rich Low_complexity Low_complexity 1 22 0 883 189 11 27 chr15 95128065 95128250 -6252271 - AluJo SINE Alu -10 302 121 27 29 0 0 chr15 95128532 95128566 -6251955 + AT_rich Low_complexity Low_complexity 1 34 0 447 322 50 41 chr15 95130035 95130277 -6250244 - L2 LINE L2 0 3272 3029 548 66 13 13 chr15 95132561 95132637 -6247884 + MER4E LTR ERV1 1 76 -703 3130 59 8 71 chr15 95134416 95134894 -6245627 - LTR7 LTR ERV1 -2 448 1 2501 75 64 13 chr15 95134894 95135267 -6245254 - HERVH LTR ERV1 0 7713 7322 1215 156 18 9 chr15 95135265 95135483 -6245038 - HERVH LTR ERV1 -1894 5819 5600 * 3540 148 2 3 chr15 95135484 95136090 -6244431 - HERVH LTR ERV1 -2564 5149 4488 3486 100 0 4 chr15 95136092 95136582 -6243939 - HERVH LTR ERV1 -3720 3993 3506 20152 95 63 37 chr15 95136587 95139794 -6240727 - HERVH LTR ERV1 -4423 3290 1 3468 64 0 7 chr15 95139796 95140247 -6240274 - LTR7 LTR ERV1 -2 448 1 871 243 41 18 chr15 95142073 95142291 -6238230 + MER58A DNA MER1_type 1 223 -1 816 260 37 15 chr15 95143537 95143806 -6236715 + AluSg SINE Alu 36 310 0 646 93 0 28 chr15 95143832 95143939 -6236582 + AluSg/x SINE Alu 207 310 0 220 250 67 0 chr15 95144901 95144961 -6235560 + L2 LINE L2 3193 3256 -57 1104 286 16 7 chr15 95144979 95145287 -6235234 - MER93a LTR ERV1 0 402 92 231 189 19 19 chr15 95145608 95145661 -6234860 - MIR SINE MIR -103 105 53 220 342 24 58 chr15 95145691 95146049 -6234472 + L3 LINE CR1 1155 1555 -22 584 296 20 103 chr15 95147405 95147756 -6232765 + MER102b DNA MER1_type 10 331 -10 268 376 7 0 chr15 95148042 95148191 -6232330 - L2 LINE L2 -236 3036 2887 207 356 17 17 chr15 95151147 95151265 -6229256 + L2 LINE L2 2410 2527 -787 217 303 61 10 chr15 95151589 95151688 -6228833 + L2 LINE L2 2935 3038 -234 216 274 0 0 chr15 95151772 95151823 -6228698 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 581 149 133 14 chr15 95152033 95152204 -6228317 - L1M4 LINE L1 -1315 4831 4645 201 156 0 0 chr15 95154114 95154146 -6226375 + (CATA)n Simple_repeat Simple_repeat 4 35 0 1377 84 40 26 chr15 95154501 95154727 -6225794 - L1MA9 LINE L1 0 6312 6084 351 44 0 0 chr15 95155523 95155568 -6224953 + (CA)n Simple_repeat Simple_repeat 2 46 0 2260 109 0 10 chr15 95155652 95155956 -6224565 - AluY SINE Alu -7 304 4 32 26 0 0 chr15 95156058 95156097 -6224424 + AT_rich Low_complexity Low_complexity 1 39 0 36 53 0 0 chr15 95157349 95157406 -6223115 + AT_rich Low_complexity Low_complexity 1 57 0 4936 197 21 31 chr15 95157410 95158868 -6221653 + L1MD1 LINE L1 4795 6238 -4 234 254 216 0 chr15 95158974 95159108 -6221413 + L1ME1 LINE L1 2006 2168 -4228 2515 117 18 5 chr15 95159139 95159565 -6220956 + L1M2 LINE L1 2256 2719 -4130 4018 14 0 0 chr15 95159566 95160215 -6220306 - L1PA3 LINE L1 -582 5573 4925 5076 27 3 0 chr15 95160216 95160800 -6219721 + L1PA3 LINE L1 5570 6155 0 1424 221 56 94 chr15 95160803 95161550 -6218971 + L1ME1 LINE L1 4979 5693 -542 2276 76 42 0 chr15 95161550 95161838 -6218683 + AluSg SINE Alu 2 301 -9 1424 221 56 94 chr15 95161838 95162103 -6218418 + L1ME1 LINE L1 5693 5966 -269 519 60 0 0 chr15 95162711 95162778 -6217743 + (GGA)n Simple_repeat Simple_repeat 2 68 0 3337 75 2 14 chr15 95162880 95163323 -6217198 + MER4E LTR ERV1 329 766 0 292 22 22 22 chr15 95163957 95164003 -6216518 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 22 70 0 0 chr15 95166575 95166618 -6213903 + AT_rich Low_complexity Low_complexity 1 43 0 1119 117 13 0 chr15 95166902 95167056 -6213465 - AluSx SINE Alu -21 289 134 313 271 47 0 chr15 95167065 95167150 -6213371 - L1MC4 LINE L1 -1340 6702 6614 * 357 255 0 21 chr15 95167076 95167170 -6213351 + L1MC4 LINE L1 6614 6705 -1337 638 155 10 0 chr15 95167200 95167303 -6213218 - AluSx SINE Alu -180 133 30 300 259 24 0 chr15 95168131 95168265 -6212256 + C-rich Low_complexity Low_complexity 1 137 0 206 233 267 0 chr15 95173747 95173837 -6206684 + L2 LINE L2 3198 3311 -2 180 97 0 0 chr15 95177978 95178009 -6202512 + (T)n Simple_repeat Simple_repeat 1 31 0 618 228 56 6 chr15 95179133 95179295 -6201226 + MLT2C1 LTR ERVL 5 174 -223 1999 134 38 22 chr15 95179295 95179739 -6200782 + LTR35 LTR ERV1 1 542 -76 899 198 30 60 chr15 95179828 95179876 -6200645 - MLT2C1 LTR ERVL -2 395 347 633 43 21 11 chr15 95179876 95179970 -6200551 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 899 198 30 60 chr15 95179970 95180153 -6200368 - MLT2C1 LTR ERVL -50 347 171 252 158 0 0 chr15 95180153 95180191 -6200330 - LTR35 LTR ERV1 0 618 581 256 288 240 0 chr15 95181139 95181285 -6199236 + MIR SINE MIR 55 235 -27 182 163 93 0 chr15 95181314 95181357 -6199164 + L2 LINE L2 3145 3191 -81 2258 127 13 44 chr15 95181615 95182002 -6198519 - THE1C LTR MaLR 0 375 1 1753 237 124 28 chr15 95182303 95182844 -6197677 - MLT1E LTR MaLR 0 593 1 1517 46 0 0 chr15 95183530 95183703 -6196818 + AluY SINE Alu 129 301 -10 1329 220 77 3 chr15 95184047 95184397 -6196124 + Charlie4a DNA MER1_type 83 458 -50 1111 148 12 0 chr15 95184668 95184830 -6195691 + FAM SINE Alu 6 169 -16 314 339 0 0 chr15 95184830 95184942 -6195579 - L1MC4 LINE L1 -17 8025 7914 662 327 11 14 chr15 95185019 95185297 -6195224 + L2 LINE L2 62 338 -2976 719 286 21 17 chr15 95187884 95188174 -6192347 - L1ME LINE L1 -344 5777 5487 358 348 57 6 chr15 95189467 95189625 -6190896 - MIR SINE MIR 0 262 97 210 245 19 0 chr15 95190133 95190186 -6190335 + GA-rich Low_complexity Low_complexity 4 57 0 368 382 26 21 chr15 95190742 95190969 -6189552 + MIR SINE MIR 2 230 -32 225 119 0 0 chr15 95191508 95191550 -6188971 + (T)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr15 95191612 95191636 -6188885 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr15 95192942 95192979 -6187542 + AT_rich Low_complexity Low_complexity 1 37 0 215 61 30 0 chr15 95194708 95194741 -6185780 + (GA)n Simple_repeat Simple_repeat 1 34 0 200 368 105 9 chr15 95198509 95198623 -6181898 - L2 LINE L2 -1 3271 3147 1838 187 8 37 chr15 95198824 95199204 -6181317 + MLT1B LTR MaLR 1 370 -20 2169 107 45 28 chr15 95199204 95199560 -6180961 + THE1B LTR MaLR 3 364 0 1838 187 8 37 chr15 95199560 95199581 -6180940 + MLT1B LTR MaLR 370 390 0 712 295 176 0 chr15 95199875 95200204 -6180317 + L2 LINE L2 2890 3276 -37 287 239 14 0 chr15 95200230 95200301 -6180220 + MIR SINE MIR 170 241 -21 221 170 43 21 chr15 95200809 95200856 -6179665 - MIR SINE MIR -105 157 110 379 310 136 0 chr15 95201007 95201191 -6179330 + MER58A DNA MER1_type 1 209 -15 1516 170 28 68 chr15 95201544 95201867 -6178654 + AluJb SINE Alu 1 310 -2 352 277 116 32 chr15 95202451 95202709 -6177812 + L1MEc LINE L1 1972 2191 -4024 338 267 34 19 chr15 95202719 95202925 -6177596 + L1MEc LINE L1 2179 2387 -3828 619 258 0 6 chr15 95203516 95203675 -6176846 - MER97a DNA MER1_type? -715 179 22 469 153 61 0 chr15 95203865 95203963 -6176558 - L1MA9 LINE L1 -38 6274 6171 377 294 24 24 chr15 95204725 95204851 -6175670 - MIR SINE MIR -97 165 40 498 189 277 77 chr15 95205118 95205403 -6175118 + MER2 DNA MER2_type 2 343 -2 484 233 118 60 chr15 95206312 95206660 -6173861 - HAL1b LINE L1 -232 1116 749 21 36 0 0 chr15 95206683 95206711 -6173810 + AT_rich Low_complexity Low_complexity 1 28 0 393 269 121 66 chr15 95206711 95206781 -6173740 - HAL1b LINE L1 -592 756 691 2068 135 3 23 chr15 95206781 95207084 -6173437 - AluSp SINE Alu -16 297 1 393 269 121 66 chr15 95207084 95207318 -6173203 - HAL1b LINE L1 -657 691 435 1594 188 10 7 chr15 95207501 95207810 -6172711 - AluJo SINE Alu 0 312 3 371 163 12 25 chr15 95207823 95207903 -6172618 - HAL1b LINE L1 -835 513 435 2550 186 21 23 chr15 95207932 95208214 -6172307 + MER34 LTR ERV1 27 309 -233 2129 96 0 14 chr15 95208214 95208532 -6171989 - AluSc SINE Alu 0 309 14 2550 186 21 23 chr15 95208532 95208765 -6171756 + MER34 LTR ERV1 309 541 -1 189 245 0 0 chr15 95208770 95208819 -6171702 + (CATA)n Simple_repeat Simple_repeat 4 52 0 2147 155 3 5 chr15 95211190 95211557 -6168964 + MER47A DNA MER2_type 1 366 0 29 47 0 0 chr15 95212434 95212477 -6168044 + AT_rich Low_complexity Low_complexity 1 43 0 1546 91 5 0 chr15 95213784 95213983 -6166538 + AluSq SINE Alu 102 301 -12 25 31 0 0 chr15 95214021 95214053 -6166468 + AT_rich Low_complexity Low_complexity 1 32 0 384 186 21 31 chr15 95214081 95214178 -6166343 - Charlie1 DNA MER1_type 0 2761 2666 221 0 35 0 chr15 95214178 95214207 -6166314 + (TA)n Simple_repeat Simple_repeat 1 30 0 233 240 0 42 chr15 95214211 95214307 -6166214 - L1MC4 LINE L1 -1339 6703 6612 452 66 0 104 chr15 95214330 95214513 -6166008 + (TA)n Simple_repeat Simple_repeat 1 164 0 1473 290 89 43 chr15 95214651 95214937 -6165584 - HERVL LTR ERVL -1947 3707 3436 2302 104 0 0 chr15 95214937 95215236 -6165285 - AluSx SINE Alu -13 299 1 1473 290 89 43 chr15 95215236 95216236 -6164285 - HERVL LTR ERVL -2218 3436 2350 182 36 0 36 chr15 95216868 95216896 -6163625 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 443 270 118 34 chr15 95217138 95217316 -6163205 - LTR50 LTR ERVL -602 193 1 423 330 48 5 chr15 95217434 95217622 -6162899 + MIR SINE MIR 65 260 -2 1982 124 3 3 chr15 95217642 95217952 -6162569 - AluSx SINE Alu 0 310 1 908 149 6 65 chr15 95218836 95219052 -6161469 + AluSg/x SINE Alu 127 332 0 269 326 0 21 chr15 95220495 95220590 -6159931 + L2 LINE L2 2893 2985 -328 283 222 128 94 chr15 95220609 95220789 -6159732 + L2 LINE L2 3090 3275 -38 2354 68 0 10 chr15 95221349 95221642 -6158879 - AluY SINE Alu -21 290 1 23 54 0 0 chr15 95221964 95222001 -6158520 + AT_rich Low_complexity Low_complexity 1 37 0 21 100 0 0 chr15 95223002 95223072 -6157449 + AT_rich Low_complexity Low_complexity 1 70 0 23 78 0 0 chr15 95223476 95223527 -6156994 + AT_rich Low_complexity Low_complexity 1 51 0 230 291 73 0 chr15 95223705 95223815 -6156706 + L1ME LINE L1 5742 5859 -262 1983 119 7 20 chr15 95223902 95224197 -6156324 + AluSx SINE Alu 1 291 -21 534 16 0 0 chr15 95224197 95224260 -6156261 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 181 386 140 21 chr15 95224883 95225212 -6155309 - L2 LINE L2 0 3272 2905 3198 194 101 22 chr15 95225258 95226019 -6154502 + MER21B LTR ERV1 2 822 -41 4097 175 4 14 chr15 95226203 95227015 -6153506 + L1MB3 LINE L1 5380 6183 0 241 163 0 0 chr15 95227263 95227306 -6153215 - L2 LINE L2 -574 2740 2698 10102 129 31 159 chr15 95227387 95229413 -6151108 + Tigger1 DNA MER2_type 1 2285 -133 2107 113 3 0 chr15 95229413 95229724 -6150797 + AluSp SINE Alu 1 312 0 10102 129 31 159 chr15 95229724 95230249 -6150272 + Tigger1 DNA MER2_type 2285 2176 -242 1644 132 4 8 chr15 95230249 95230484 -6150037 - AluSx SINE Alu -77 235 2 10102 129 31 159 chr15 95230484 95230691 -6149830 + Tigger1 DNA MER2_type 2175 2407 -11 318 341 34 10 chr15 95230698 95230906 -6149615 - L2 LINE L2 -393 2921 2709 186 262 0 0 chr15 95231016 95231058 -6149463 + L2 LINE L2 2584 2625 -689 374 314 78 104 chr15 95231186 95231647 -6148874 + L2 LINE L2 2818 3266 -6 210 158 0 0 chr15 95232381 95232419 -6148102 + T-rich Low_complexity Low_complexity 1 38 0 5714 84 37 5 chr15 95232422 95233289 -6147232 - L1PB1 LINE L1 -3 6148 5254 627 289 50 14 chr15 95233472 95233690 -6146831 - MIR SINE MIR -8 254 29 3584 92 25 92 chr15 95234345 95235020 -6145501 + L1MA3 LINE L1 5676 6305 0 219 167 0 0 chr15 95235816 95235858 -6144663 + GA-rich Low_complexity Low_complexity 2 43 0 366 244 0 0 chr15 95236776 95236854 -6143667 + MER33 DNA MER1_type 3 80 -244 2070 163 92 0 chr15 95236868 95237260 -6143261 - MSTA LTR MaLR 0 428 1 234 0 0 0 chr15 95237366 95237392 -6143129 + (T)n Simple_repeat Simple_repeat 1 26 0 295 306 75 65 chr15 95237433 95237632 -6142889 - L2 LINE L2 -43 3229 3029 208 394 67 11 chr15 95237825 95238005 -6142516 - L2 LINE L2 -443 2871 2682 187 380 101 8 chr15 95238171 95238408 -6142113 - L2 LINE L2 -928 2386 2128 2185 83 3 21 chr15 95238634 95238924 -6141597 - AluY SINE Alu -19 292 8 22 35 0 0 chr15 95238935 95238964 -6141557 + AT_rich Low_complexity Low_complexity 1 29 0 237 65 0 0 chr15 95240441 95240472 -6140049 + (T)n Simple_repeat Simple_repeat 1 31 0 3353 145 18 113 chr15 95241742 95242308 -6138213 + MER44D DNA MER2_type 2 476 -2111 207 69 0 0 chr15 95242308 95242337 -6138184 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 3353 145 18 113 chr15 95242337 95242548 -6137973 + MER44D DNA MER2_type 476 705 0 321 314 36 7 chr15 95242561 95242701 -6137820 - MLT1J2 LTR MaLR -44 406 263 445 178 42 34 chr15 95242781 95242899 -6137622 - MLT1J2 LTR MaLR -303 147 29 2258 75 0 7 chr15 95242951 95243264 -6137257 + AluY SINE Alu 1 311 0 199 324 70 14 chr15 95243610 95243681 -6136840 - L2 LINE L2 0 3313 3239 1336 159 0 90 chr15 95243972 95244261 -6136260 + AluJo SINE Alu 50 312 0 398 360 16 11 chr15 95244581 95244767 -6135754 - MIR SINE MIR -3 259 73 249 33 0 0 chr15 95244851 95244881 -6135640 + (TG)n Simple_repeat Simple_repeat 2 31 0 220 296 107 65 chr15 95245033 95245202 -6135319 + MIR3 SINE MIR 8 183 -25 233 256 23 0 chr15 95245901 95245987 -6134534 + CT-rich Low_complexity Low_complexity 3 90 0 605 258 164 13 chr15 95246450 95246675 -6133846 + MIR SINE MIR 2 260 -2 344 261 73 60 chr15 95247500 95247718 -6132803 - L1MC/D LINE L1 -588 5533 5313 331 330 70 40 chr15 95249066 95249266 -6131255 - MIR SINE MIR -3 259 54 2430 83 3 0 chr15 95249296 95249598 -6130923 + AluSp SINE Alu 1 303 -10 180 125 0 0 chr15 95250304 95250336 -6130185 + (A)n Simple_repeat Simple_repeat 1 32 0 197 338 12 38 chr15 95250513 95250593 -6129928 - L2 LINE L2 -1 3312 3235 485 229 59 0 chr15 95251105 95251258 -6129263 - L1MC3 LINE L1 -164 7621 7460 190 311 33 33 chr15 95251527 95251617 -6128904 - L2 LINE L2 0 3313 3224 191 330 102 23 chr15 95252080 95252168 -6128353 + MIR SINE MIR 46 140 -68 249 33 0 0 chr15 95252276 95252306 -6128215 + (CA)n Simple_repeat Simple_repeat 1 30 0 392 217 86 26 chr15 95252888 95253040 -6127481 - MER103 DNA DNA -1 165 5 2502 70 0 6 chr15 95253428 95253740 -6126781 - AluY SINE Alu -1 310 1 1469 219 86 103 chr15 95254122 95254880 -6125641 + LTR1B LTR ERV1 1 745 -81 405 196 147 10 chr15 95254964 95255066 -6125455 + LTR28 LTR ERV1 905 1020 0 402 287 176 11 chr15 95255073 95255261 -6125260 - MIR SINE MIR -11 251 33 238 344 116 36 chr15 95257014 95257238 -6123283 + L2 LINE L2 2594 2835 -479 294 310 0 0 chr15 95257300 95257371 -6123150 + L2 LINE L2 3243 3313 0 2430 60 94 0 chr15 95259232 95259563 -6120958 - L1PA4 LINE L1 -3 6152 5791 3615 30 15 0 chr15 95259563 95260026 -6120495 + L1P LINE L1 3578 4047 -2099 204 306 74 37 chr15 95260824 95260932 -6119589 + L2 LINE L2 3198 3309 -4 267 386 35 13 chr15 95260990 95261172 -6119349 + MIR SINE MIR 19 204 -43 446 307 64 37 chr15 95262391 95262609 -6117912 + MIR SINE MIR 20 243 -19 2312 64 7 0 chr15 95262742 95263040 -6117481 + AluY SINE Alu 1 300 -11 262 324 56 34 chr15 95263232 95263411 -6117110 + MIR3 SINE MIR 12 194 -14 236 373 32 0 chr15 95263680 95263806 -6116715 - MIR SINE MIR -6 256 127 224 395 44 9 chr15 95263934 95264048 -6116473 - MIR SINE MIR -75 133 16 288 0 0 0 chr15 95264748 95264780 -6115741 + (TG)n Simple_repeat Simple_repeat 1 32 0 30 27 0 0 chr15 95265353 95265390 -6115131 + AT_rich Low_complexity Low_complexity 1 37 0 211 289 0 0 chr15 95265678 95265730 -6114791 + CT-rich Low_complexity Low_complexity 2 53 0 183 80 0 0 chr15 95267108 95267133 -6113388 + (A)n Simple_repeat Simple_repeat 1 25 0 405 0 0 0 chr15 95268648 95268693 -6111828 + (CA)n Simple_repeat Simple_repeat 2 46 0 180 0 0 0 chr15 95271202 95271222 -6109299 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5221 14 3 1 chr15 95273160 95274158 -6106363 - L1PA2 LINE L1 -266 5889 4890 2220 16 4 0 chr15 95274158 95274415 -6106106 + L1PA2 LINE L1 5896 6153 -2 245 361 32 44 chr15 95274563 95274721 -6105800 - MIR3 SINE MIR -49 159 4 2408 44 9 47 chr15 95274819 95275139 -6105382 + AluY SINE Alu 1 308 -3 292 273 0 0 chr15 95275313 95275379 -6105142 + (TG)n Simple_repeat Simple_repeat 2 67 0 417 264 0 0 chr15 95275666 95275814 -6104707 + (TG)n Simple_repeat Simple_repeat 2 149 0 316 278 6 6 chr15 95275850 95276023 -6104498 + (TG)n Simple_repeat Simple_repeat 2 174 0 349 252 0 14 chr15 95276054 95276197 -6104324 + (TG)n Simple_repeat Simple_repeat 2 142 0 216 274 0 0 chr15 95276570 95276632 -6103889 + (ATG)n Simple_repeat Simple_repeat 1 62 0 348 385 19 0 chr15 95276642 95276798 -6103723 - MIR SINE MIR -101 161 3 270 125 0 0 chr15 95277548 95277596 -6102925 + (TG)n Simple_repeat Simple_repeat 1 48 0 209 122 0 24 chr15 95277896 95277937 -6102584 + (TA)n Simple_repeat Simple_repeat 2 41 0 396 0 0 0 chr15 95277937 95277981 -6102540 + (GA)n Simple_repeat Simple_repeat 2 45 0 207 0 0 0 chr15 95277982 95278005 -6102516 + (TA)n Simple_repeat Simple_repeat 1 23 0 1918 102 35 28 chr15 95278006 95278291 -6102230 - AluSc SINE Alu -22 287 1 1378 177 54 7 chr15 95279225 95279519 -6101002 + MER61A LTR ERV1 1 308 -35 282 316 51 8 chr15 95280143 95280260 -6100261 - MIR3 SINE MIR -48 160 39 2119 131 0 7 chr15 95280424 95280746 -6099775 - AluSg SINE Alu 0 310 1 1203 151 21 151 chr15 95280830 95281162 -6099359 + AluJo SINE Alu 1 289 -13 314 282 33 105 chr15 95282172 95282353 -6098168 + MIR SINE MIR 47 214 -48 1709 235 114 43 chr15 95282938 95283709 -6096812 - LTR1B LTR ERV1 0 826 1 471 364 119 17 chr15 95283711 95284123 -6096398 + L2 LINE L2 2511 2964 -350 265 47 47 0 chr15 95284618 95284661 -6095860 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 1374 24 6 0 chr15 95284744 95284908 -6095613 + L1PA5 LINE L1 5987 6151 -3 22 0 0 0 chr15 95284908 95284930 -6095591 + AT_rich Low_complexity Low_complexity 1 22 0 437 307 73 11 chr15 95285085 95285443 -6095078 + L1ME LINE L1 5261 5640 -530 239 210 116 24 chr15 95285501 95285661 -6094860 + L1ME LINE L1 5728 5897 -224 21 0 0 0 chr15 95286081 95286102 -6094419 + AT_rich Low_complexity Low_complexity 1 21 0 548 202 51 34 chr15 95286564 95286742 -6093779 + MER53 DNA DNA 9 189 0 2033 141 92 51 chr15 95286996 95287187 -6093334 + MSTC LTR MaLR 1 183 -245 2449 82 3 0 chr15 95287187 95287493 -6093028 + AluY SINE Alu 1 307 -4 2033 141 92 51 chr15 95287493 95287712 -6092809 + MSTC LTR MaLR 183 428 0 211 386 96 15 chr15 95289814 95290086 -6090435 + L2 LINE L2 2660 2953 -361 771 144 0 0 chr15 95290628 95290746 -6089775 + FLAM_C SINE Alu 1 118 -15 35 24 0 0 chr15 95290746 95290788 -6089733 + AT_rich Low_complexity Low_complexity 1 42 0 743 254 69 62 chr15 95291308 95291599 -6088922 - L1M4 LINE L1 -508 5656 5364 279 0 0 0 chr15 95291607 95291638 -6088883 + (TA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr15 95291979 95292002 -6088519 + AT_rich Low_complexity Low_complexity 1 23 0 1215 290 59 58 chr15 95292263 95293202 -6087319 - L1MEd LINE L1 -4862 1257 318 2007 128 3 0 chr15 95293233 95293555 -6086966 - AluSg SINE Alu 0 323 1 378 134 0 0 chr15 95293870 95293937 -6086584 + (T)n Simple_repeat Simple_repeat 1 67 0 217 370 0 0 chr15 95294281 95294362 -6086159 + MIR SINE MIR 73 153 -109 6030 214 36 48 chr15 95294626 95296718 -6083803 - L1MB7 LINE L1 -10 6174 4122 2058 112 7 31 chr15 95296718 95297012 -6083509 - AluSx SINE Alu -22 290 4 6030 214 36 48 chr15 95297012 95297544 -6082977 - L1MB7 LINE L1 -2062 4122 3585 2239 115 3 3 chr15 95298222 95298527 -6081994 + AluSq SINE Alu 1 305 -8 580 219 120 68 chr15 95298661 95298874 -6081647 + MLT1L LTR MaLR 1 206 -299 416 297 73 75 chr15 95299797 95300315 -6080206 + ERVL LTR ERVL 883 1399 -4365 1305 227 84 9 chr15 95300428 95300749 -6079772 + MER2 DNA MER2_type 1 345 0 216 67 0 0 chr15 95301363 95301393 -6079128 + (CA)n Simple_repeat Simple_repeat 2 31 0 1536 316 48 21 chr15 95301400 95302113 -6078408 + ERVL LTR ERVL 2195 2926 -2838 461 354 48 18 chr15 95302152 95302646 -6077875 + ERVL LTR ERVL 2992 3505 -2149 340 269 124 31 chr15 95302862 95303055 -6077466 + ERVL LTR ERVL 3871 4081 -1683 775 318 54 30 chr15 95303134 95303596 -6076925 + ERVL LTR ERVL 4193 4665 -1099 1130 308 28 24 chr15 95303616 95304110 -6076411 + ERVL LTR ERVL 4851 5346 -418 10774 127 20 10 chr15 95304480 95306166 -6074355 - Tigger1 DNA MER2_type -4 2414 712 250 167 244 0 chr15 95306163 95306241 -6074280 - Tigger1 DNA MER2_type -2321 97 1 * 185 373 75 31 chr15 95307070 95307231 -6073290 - L2 LINE L2 -16 3256 3089 411 349 23 12 chr15 95308036 95308208 -6072313 + MLT1L LTR MaLR 88 261 -354 651 313 56 4 chr15 95308244 95308493 -6072028 + MLT1L LTR MaLR 346 607 -8 265 300 20 10 chr15 95308794 95308894 -6071627 + MIR3 SINE MIR 91 191 -17 251 231 99 44 chr15 95309044 95309135 -6071386 - L2 LINE L2 -56 3257 3162 337 313 63 56 chr15 95309821 95310404 -6070117 + L1MEc LINE L1 1031 1622 -4774 7372 39 0 7 chr15 95310404 95311712 -6068809 - L1PA5 LINE L1 -2 6152 4850 337 313 63 56 chr15 95311712 95311895 -6068626 + L1MEc LINE L1 1622 1802 -4594 503 271 67 86 chr15 95311983 95312356 -6068165 + L1MEc LINE L1 1984 2349 -4047 406 252 124 24 chr15 95312428 95312678 -6067843 + L1MEc LINE L1 2328 2602 -3613 15116 167 20 22 chr15 95312703 95317156 -6063365 - L1MA2 LINE L1 0 7723 3281 732 277 131 48 chr15 95317201 95317581 -6062940 + L1MEc LINE L1 2650 2997 -3218 2368 110 0 0 chr15 95317581 95317891 -6062630 + AluSx SINE Alu 1 310 -2 732 277 131 48 chr15 95317891 95318514 -6062007 + L1MEc LINE L1 2997 3736 -2479 717 271 35 99 chr15 95318511 95318710 -6061811 + L1ME3A LINE L1 5754 5964 -206 * 630 215 0 16 chr15 95318710 95318831 -6061690 + FLAM_C SINE Alu 1 119 -14 369 43 0 0 chr15 95318831 95318878 -6061643 + (CA)n Simple_repeat Simple_repeat 2 48 0 717 271 35 99 chr15 95318878 95319112 -6061409 + L1ME3A LINE L1 5962 6160 -10 25 21 0 43 chr15 95319112 95319139 -6061382 + AT_rich Low_complexity Low_complexity 1 27 -18 2169 97 0 10 chr15 95319139 95319427 -6061094 - AluSc SINE Alu -24 285 1 25 21 0 43 chr15 95319427 95319446 -6061075 + AT_rich Low_complexity Low_complexity 27 45 0 595 238 102 0 chr15 95319446 95319652 -6060869 + MER69 DNA AcHobo 2075 2301 -225 1358 208 0 7 chr15 95319677 95319951 -6060570 - AluJb SINE Alu -4 308 37 246 273 0 0 chr15 95321364 95321419 -6059102 + (CA)n Simple_repeat Simple_repeat 2 56 0 316 289 6 25 chr15 95321935 95322081 -6058440 + MIR SINE MIR 7 147 -77 250 323 116 30 chr15 95322117 95322281 -6058240 + MIR SINE MIR 69 246 -16 217 348 11 22 chr15 95322291 95322380 -6058141 - L2 LINE L2 -28 3285 3198 252 247 97 11 chr15 95322692 95322785 -6057736 - MIR SINE MIR -76 186 86 191 36 36 0 chr15 95322803 95322831 -6057690 + (CA)n Simple_repeat Simple_repeat 1 29 0 252 0 0 0 chr15 95323193 95323221 -6057300 + (T)n Simple_repeat Simple_repeat 1 28 0 23 33 0 0 chr15 95323551 95323581 -6056940 + GC_rich Low_complexity Low_complexity 1 30 0 204 67 0 0 chr15 95323880 95323910 -6056611 + (A)n Simple_repeat Simple_repeat 1 30 0 25 65 0 0 chr15 95326664 95326710 -6053811 + AT_rich Low_complexity Low_complexity 1 46 0 531 201 22 58 chr15 95327039 95327178 -6053343 - MER20 DNA MER1_type 0 219 86 334 333 99 24 chr15 95327316 95327568 -6052953 + L2 LINE L2 2964 3234 -38 278 287 11 0 chr15 95328801 95328888 -6051633 - MIR SINE MIR -11 251 164 5169 170 30 14 chr15 95328986 95329957 -6050564 - L1MD2 LINE L1 -1 6358 5373 480 327 36 6 chr15 95330627 95330792 -6049729 + MIR SINE MIR 20 189 -73 526 345 116 54 chr15 95331139 95331603 -6048918 - L3 LINE CR1 -110 1467 975 195 167 0 0 chr15 95333389 95333431 -6047090 + GA-rich Low_complexity Low_complexity 1 42 0 456 273 80 73 chr15 95335385 95335660 -6044861 + L2 LINE L2 3036 3312 -1 520 332 13 9 chr15 95335810 95336036 -6044485 + MIR SINE MIR 31 262 0 195 340 50 43 chr15 95336690 95336831 -6043690 + L2 LINE L2 2714 2855 -459 2270 117 3 3 chr15 95336995 95337303 -6043218 - AluSg SINE Alu -2 308 1 27 87 0 0 chr15 95337426 95337495 -6043026 + AT_rich Low_complexity Low_complexity 1 69 0 319 266 58 35 chr15 95339000 95339142 -6041379 - MIR SINE MIR -18 244 100 1026 240 0 5 chr15 95339176 95339393 -6041128 + AluJb SINE Alu 85 300 -12 253 263 10 81 chr15 95339756 95339855 -6040666 + MIR SINE MIR 103 194 -68 1032 76 0 7 chr15 95339855 95339999 -6040522 + AluY SINE Alu 168 310 -1 2539 77 0 0 chr15 95341524 95341834 -6038687 + AluY SINE Alu 1 310 -1 1353 82 0 5 chr15 95341865 95342049 -6038472 + L1PA7 LINE L1 5971 6153 -1 213 319 53 21 chr15 95343246 95343340 -6037181 - L2 LINE L2 -15 3257 3161 583 185 0 60 chr15 95343961 95344066 -6036455 + L1MB1 LINE L1 6027 6123 -45 1937 122 7 21 chr15 95344066 95344388 -6036133 + AluSx SINE Alu 1 318 0 583 185 0 60 chr15 95344388 95344432 -6036089 + L1MB1 LINE L1 6123 6168 0 2940 195 40 32 chr15 95344507 95345189 -6035332 - MER76 LTR ERV 0 688 2 252 236 18 0 chr15 95345205 95345260 -6035261 - MIR SINE MIR -195 67 12 240 325 106 12 chr15 95345457 95345617 -6034904 - L2 LINE L2 -220 3052 2878 320 218 11 0 chr15 95345617 95345704 -6034817 + (TG)n Simple_repeat Simple_repeat 1 88 0 1100 193 124 40 chr15 95346280 95346602 -6033919 + MLT1C LTR MaLR 3 351 -116 2019 89 0 0 chr15 95346637 95346927 -6033594 - AluSg SINE Alu 0 322 33 1450 164 6 102 chr15 95346932 95347095 -6033426 - AluJo SINE Alu -9 293 175 2158 119 0 3 chr15 95347095 95347389 -6033132 - AluSx SINE Alu -15 297 5 1450 164 6 102 chr15 95347389 95347549 -6032972 - AluJo SINE Alu -127 175 1 262 231 0 0 chr15 95347565 95347617 -6032904 + MLT1C LTR MaLR 416 467 0 424 189 0 18 chr15 95348039 95348150 -6032371 - L1ME4a LINE L1 -5 6116 6008 346 305 23 46 chr15 95348278 95348452 -6032069 - L1ME4a LINE L1 -304 5817 5648 3089 239 23 18 chr15 95349719 95350877 -6029644 - L1ME1 LINE L1 -5 6161 5002 300 146 0 0 chr15 95350877 95350925 -6029596 - AluSg SINE Alu -254 48 1 458 211 105 38 chr15 95350985 95351122 -6029399 - L1ME1 LINE L1 -1721 4425 4268 1348 160 120 69 chr15 95351122 95351498 -6029023 + MSTD LTR MaLR 2 396 0 458 211 105 38 chr15 95351498 95351569 -6028952 - L1ME1 LINE L1 -1878 4268 4203 213 222 37 0 chr15 95352231 95352285 -6028236 + (CTCA)n Simple_repeat Simple_repeat 3 58 0 251 309 36 27 chr15 95352463 95352573 -6027948 - L2 LINE L2 -228 3044 2934 349 252 41 24 chr15 95355530 95355653 -6024868 + L1ME4a LINE L1 5152 5276 -870 573 246 119 45 chr15 95355661 95356237 -6024284 + L1ME4a LINE L1 5290 5940 -230 225 306 92 20 chr15 95356978 95357076 -6023445 - MIR SINE MIR -140 122 18 226 341 188 7 chr15 95357250 95357388 -6023133 + MER5A DNA MER1_type 27 189 0 311 288 131 81 chr15 95357482 95357916 -6022605 + L1 LINE L1 2850 3305 -2841 225 213 40 40 chr15 95358565 95358640 -6021881 + L1ME4a LINE L1 5945 6019 -102 485 238 89 48 chr15 95359075 95359243 -6021278 + MER5B DNA MER1_type 1 175 -3 1540 163 54 62 chr15 95359612 95360261 -6020260 - pTR5 LTR ERV1 -1042 1396 753 410 287 43 32 chr15 95360262 95360450 -6020071 - MIR SINE MIR -41 221 32 1643 167 0 40 chr15 95360953 95361253 -6019268 - AluJb SINE Alu -24 288 1 2081 116 0 17 chr15 95361259 95361552 -6018969 - AluSc SINE Alu -8 301 14 1482 144 58 4 chr15 95361552 95361830 -6018691 - L1MC1 LINE L1 -346 5987 5695 229 278 160 0 chr15 95361825 95361969 -6018552 - L1MA9 LINE L1 -211 6101 5935 * 231 154 0 0 chr15 95361970 95362009 -6018512 + L1M4 LINE L1 4732 4770 -1376 539 235 7 13 chr15 95362055 95362208 -6018313 + L1MA9 LINE L1 6130 6281 -31 9207 216 57 72 chr15 95362214 95363285 -6017236 - L1MCa LINE L1 -622 5991 4906 1287 243 3 20 chr15 95363285 95363589 -6016932 - AluJo SINE Alu -8 304 6 9207 216 57 72 chr15 95363589 95366404 -6014117 - L1MCa LINE L1 -1707 4906 1934 222 37 0 0 chr15 95366404 95366431 -6014090 + (CA)n Simple_repeat Simple_repeat 2 28 0 9207 216 57 72 chr15 95366431 95368319 -6012202 - L1MCa LINE L1 -4679 1934 20 3059 127 82 6 chr15 95369570 95370059 -6010462 - MER1A DNA MER1_type -1 526 1 572 263 53 0 chr15 95370587 95370815 -6009706 - MER114 LTR ERV -76 572 333 228 212 30 45 chr15 95371099 95371165 -6009356 + MIR SINE MIR 117 181 -81 255 202 0 43 chr15 95371166 95371260 -6009261 - L1MC4 LINE L1 -1339 6703 6614 387 220 0 0 chr15 95371260 95371351 -6009170 + (TA)n Simple_repeat Simple_repeat 2 92 0 3572 12 0 0 chr15 95371390 95371812 -6008709 - L1PA4 LINE L1 -384 5771 5350 3143 32 8 0 chr15 95371812 95372185 -6008336 + L1PA4 LINE L1 5766 6143 -12 256 241 24 0 chr15 95372185 95372268 -6008253 + L1MC4 LINE L1 6617 6701 -1341 226 360 36 0 chr15 95372298 95372409 -6008112 - L2 LINE L2 -240 3032 2918 213 362 118 14 chr15 95372583 95372804 -6007717 + L3b LINE CR1 1319 1562 -21 183 42 0 0 chr15 95373152 95373176 -6007345 + (TG)n Simple_repeat Simple_repeat 2 25 0 234 321 19 0 chr15 95374393 95374499 -6006022 - L1ME3A LINE L1 -13 6157 6050 2291 102 0 0 chr15 95375521 95375816 -6004705 + AluSg SINE Alu 1 295 -15 1944 145 10 19 chr15 95375827 95376137 -6004384 + AluSx SINE Alu 1 307 -5 345 290 133 40 chr15 95376448 95376825 -6003696 - L1ME LINE L1 -393 5728 5315 484 308 84 8 chr15 95377420 95377657 -6002864 + L1ME4a LINE L1 5628 5882 -239 1388 178 0 22 chr15 95377674 95377904 -6002617 + AluJo SINE Alu 1 225 -87 213 370 100 12 chr15 95379674 95379923 -6000598 - L2 LINE L2 -491 2823 2553 2228 109 7 0 chr15 95382007 95382309 -5998212 - AluSc SINE Alu -1 308 5 1712 101 5 0 chr15 95382632 95382851 -5997670 + AluSc SINE Alu 1 220 -89 191 35 0 35 chr15 95382851 95382880 -5997641 + (GAAAA)n Simple_repeat Simple_repeat 1 28 0 2221 111 7 3 chr15 95383233 95383539 -5996982 - AluSg SINE Alu -3 307 1 302 297 7 35 chr15 95383908 95384053 -5996468 + MER45A DNA AcHobo 38 178 0 500 0 17 0 chr15 95384397 95384457 -5996064 + (CA)n Simple_repeat Simple_repeat 2 62 0 27 0 0 0 chr15 95385567 95385594 -5994927 + AT_rich Low_complexity Low_complexity 1 27 0 357 320 183 10 chr15 95385625 95385822 -5994699 + MIR SINE MIR 30 260 -2 191 313 70 0 chr15 95385879 95385994 -5994527 - L3 LINE CR1 -774 803 681 1735 156 6 32 chr15 95386721 95387060 -5993461 - MLT1A1 LTR MaLR -3 362 33 544 227 188 7 chr15 95387889 95388043 -5992478 + MER5A DNA MER1_type 8 189 0 198 271 14 86 chr15 95389081 95389118 -5991403 + L2 LINE L2 3205 3236 -36 1719 194 31 3 chr15 95389118 95389473 -5991048 - MLT1A1 LTR MaLR 0 365 1 198 271 14 86 chr15 95389473 95389505 -5991016 + L2 LINE L2 3236 3269 -3 345 284 42 32 chr15 95391109 95391398 -5989123 + Charlie7 DNA MER1_type 1 338 -2274 1684 189 0 10 chr15 95391419 95391710 -5988811 - AluJb SINE Alu -18 294 7 26 30 0 0 chr15 95391729 95391762 -5988759 + AT_rich Low_complexity Low_complexity 1 33 0 5375 170 23 10 chr15 95391907 95393450 -5987071 - L1MA6 LINE L1 -6 6294 4728 429 241 113 36 chr15 95393530 95393955 -5986566 + Charlie7 DNA MER1_type 1906 2410 -202 22 0 0 0 chr15 95394299 95394321 -5986200 + AT_rich Low_complexity Low_complexity 1 22 0 442 292 25 44 chr15 95396707 95396914 -5983607 + MIR SINE MIR 30 233 -29 1219 205 69 85 chr15 95397116 95397491 -5983030 + MLT1A2 LTR MaLR 1 369 -5 950 276 4 8 chr15 95397810 95398049 -5982472 + L1MD1 LINE L1 122 359 -6285 2129 223 46 32 chr15 95398050 95398160 -5982361 + L1MD1 LINE L1 934 1041 -5501 2153 87 0 27 chr15 95398160 95398460 -5982061 + AluSx SINE Alu 1 292 -20 2129 223 46 32 chr15 95398460 95399062 -5981459 + L1MD1 LINE L1 1041 1656 -4886 2181 264 47 14 chr15 95399068 95399789 -5980732 + L1MB8 LINE L1 4023 4767 -1379 * 2620 194 11 11 chr15 95399786 95400349 -5980172 + L1MB8 LINE L1 5259 5821 -363 926 211 13 113 chr15 95400355 95400472 -5980049 + MLT2C1 LTR ERVL 112 239 -158 979 178 0 11 chr15 95400472 95400663 -5979858 + L1MB8 LINE L1 5989 6177 -1 926 211 13 113 chr15 95400663 95400863 -5979658 + MLT2C1 LTR ERVL 239 397 0 1621 222 31 12 chr15 95400863 95401277 -5979244 - L1MDa LINE L1 -4487 2053 1632 1391 190 95 3 chr15 95401284 95401610 -5978911 - L1MB7 LINE L1 -9 6175 5820 667 157 33 8 chr15 95401611 95401732 -5978789 - MLT2C1 LTR ERVL -273 124 1 7524 211 57 30 chr15 95401741 95403396 -5977125 - ERVL LTR ERVL -17 5747 4048 1576 226 63 9 chr15 95403503 95403936 -5976585 - ERVL LTR ERVL -1470 4015 3585 710 143 0 0 chr15 95403923 95404028 -5976493 - LTR12 LTR ERV1 -132 582 478 * 359 222 0 0 chr15 95404039 95404120 -5976401 - LTR30 LTR ERV1 -98 624 544 1515 100 3 166 chr15 95404120 95404451 -5976070 - LTR12 LTR ERV1 -437 277 1 7335 205 22 24 chr15 95404451 95405924 -5974597 - ERVL LTR ERVL -2164 3600 2132 692 201 41 67 chr15 95405924 95406118 -5974403 - MLT2C1 LTR ERVL -87 310 122 3400 255 50 7 chr15 95406121 95407330 -5973191 + L1MD1 LINE L1 3211 4471 -2173 893 145 0 35 chr15 95407331 95407503 -5973018 - L1P LINE L1 -1366 4780 4615 1426 91 34 0 chr15 95407503 95407710 -5972811 + L1PA13 LINE L1 5949 6163 0 748 283 56 8 chr15 95407712 95408057 -5972464 + L1MD1 LINE L1 4466 4848 -1796 1280 149 67 51 chr15 95408084 95408339 -5972182 + Tigger2a DNA MER2_type 1 259 -175 1028 167 36 0 chr15 95408470 95408638 -5971883 - Tigger2 DNA MER2_type 0 2718 2545 4395 224 45 10 chr15 95408649 95409473 -5971048 + L1MD1 LINE L1 4951 5745 -995 240 35 0 0 chr15 95409473 95409502 -5971019 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4395 224 45 10 chr15 95409502 95410282 -5970239 + L1MD1 LINE L1 5745 6621 -119 2439 99 50 16 chr15 95410282 95410645 -5969876 - THE1C LTR MaLR 0 375 1 4395 224 45 10 chr15 95410645 95410768 -5969753 + L1MD1 LINE L1 6621 6738 -2 21 0 0 0 chr15 95411176 95411197 -5969324 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr15 95411233 95411253 -5969268 + (T)n Simple_repeat Simple_repeat 1 20 0 415 258 54 48 chr15 95411289 95411456 -5969065 - L1ME2 LINE L1 -3 6161 5994 737 220 124 31 chr15 95411639 95411898 -5968623 - L1ME2 LINE L1 -243 5921 5639 726 266 76 24 chr15 95411897 95412356 -5968165 + L1ME1 LINE L1 1350 1832 -4552 * 270 0 0 0 chr15 95412430 95412460 -5968061 + (GA)n Simple_repeat Simple_repeat 2 31 0 2073 159 43 36 chr15 95412465 95413015 -5967506 + MLT2A2 LTR ERVL 1 554 0 1674 277 93 31 chr15 95413221 95414491 -5966030 + L1ME1 LINE L1 1990 3337 -3045 1299 236 71 49 chr15 95414491 95414983 -5965538 + MLT1D LTR MaLR 3 505 0 1674 277 93 31 chr15 95414983 95415211 -5965310 + L1ME1 LINE L1 3337 3549 -2833 284 239 0 0 chr15 95415231 95415302 -5965219 + L1MB8 LINE L1 6092 6162 -16 2325 242 49 58 chr15 95415314 95416803 -5963718 + L1ME1 LINE L1 4776 6387 -15 241 67 22 22 chr15 95417019 95417064 -5963457 + (TTATA)n Simple_repeat Simple_repeat 4 48 0 390 252 122 22 chr15 95417506 95417645 -5962876 - MER104 DNA Tc2 -1 179 27 348 256 39 23 chr15 95418291 95418420 -5962101 + CT-rich Low_complexity Low_complexity 3 133 0 23 68 0 0 chr15 95418442 95418486 -5962035 + AT_rich Low_complexity Low_complexity 1 44 0 646 215 0 21 chr15 95419900 95420044 -5960477 - FRAM SINE Alu 0 176 36 24 0 0 0 chr15 95420071 95420095 -5960426 + AT_rich Low_complexity Low_complexity 1 24 0 200 130 22 0 chr15 95420161 95420207 -5960314 + (TAA)n Simple_repeat Simple_repeat 3 49 0 1423 191 3 46 chr15 95420245 95420548 -5959973 + AluJb SINE Alu 10 299 -13 222 203 14 58 chr15 95421528 95421597 -5958924 + GA-rich Low_complexity Low_complexity 2 67 0 220 100 60 0 chr15 95421944 95421994 -5958527 + T-rich Low_complexity Low_complexity 4 56 0 256 303 67 0 chr15 95422487 95422606 -5957915 - L1ME LINE L1 -442 5679 5553 2506 74 0 0 chr15 95422606 95422915 -5957606 + AluY SINE Alu 1 309 -2 277 325 0 25 chr15 95423938 95424018 -5956503 - L2 LINE L2 -5 3267 3190 2157 96 0 4 chr15 95424085 95424389 -5956132 - AluSg SINE Alu 0 303 1 2187 133 14 8 chr15 95424535 95424888 -5955633 + THE1A LTR MaLR 1 355 0 436 328 33 22 chr15 95425388 95425571 -5954950 + MIR SINE MIR 3 187 -75 237 276 17 0 chr15 95426381 95426439 -5954082 + L2 LINE L2 3214 3272 0 188 159 0 23 chr15 95426730 95426774 -5953747 + (TA)n Simple_repeat Simple_repeat 1 43 0 688 255 135 10 chr15 95427197 95427405 -5953116 - MLT1G1 LTR MaLR -261 334 101 760 224 0 5 chr15 95427406 95427618 -5952903 + AluJb SINE Alu 7 312 0 348 274 66 0 chr15 95427618 95427724 -5952797 - MLT1G1 LTR MaLR -482 113 1 562 250 0 15 chr15 95428251 95428387 -5952134 - LTR67 LTR ERVL 0 557 424 1999 176 33 33 chr15 95428817 95429375 -5951146 - MLT2A2 LTR ERVL 0 554 1 709 293 40 24 chr15 95429436 95429689 -5950832 - MLT1I LTR MaLR -3 406 150 4206 209 60 42 chr15 95430442 95431207 -5949314 - L1MD2 LINE L1 0 6359 5560 2075 142 0 3 chr15 95431207 95431518 -5949003 + AluSg SINE Alu 1 310 0 4206 209 60 42 chr15 95431518 95432074 -5948447 - L1MD2 LINE L1 -799 5560 5015 234 180 0 20 chr15 95432238 95432288 -5948233 + CT-rich Low_complexity Low_complexity 2 50 0 343 300 53 53 chr15 95432288 95432515 -5948006 - MIR SINE MIR -8 254 28 274 226 5 59 chr15 95432576 95432762 -5947759 + (TTA)n Simple_repeat Simple_repeat 1 176 0 2190 164 72 0 chr15 95435676 95436065 -5944456 + L1MC3 LINE L1 6444 6860 -925 2744 161 35 4 chr15 95436107 95436624 -5943897 + L1MC3 LINE L1 7251 7783 -2 186 346 26 0 chr15 95436624 95436702 -5943819 + L2 LINE L2 2239 2318 -996 12884 143 54 11 chr15 95436804 95439024 -5941497 + Tigger1 DNA MER2_type 101 2415 -3 266 353 52 22 chr15 95439569 95439705 -5940816 - L2 LINE L2 -5 3308 3169 427 144 0 17 chr15 95440719 95440837 -5939684 + (TA)n Simple_repeat Simple_repeat 2 117 0 21 36 0 0 chr15 95440977 95441005 -5939516 + AT_rich Low_complexity Low_complexity 1 28 0 213 348 33 33 chr15 95442500 95442592 -5937929 - MIR3 SINE MIR -49 159 68 227 241 37 0 chr15 95442644 95442698 -5937823 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 2573 146 5 5 chr15 95442712 95443150 -5937371 + L1MB3 LINE L1 5737 6174 -9 263 103 51 0 chr15 95443590 95443629 -5936892 - L1PA8 LINE L1 -183 5989 5949 433 38 0 0 chr15 95443631 95443684 -5936837 + L1PA5 LINE L1 6098 6150 -4 23 33 0 0 chr15 95445193 95445223 -5935298 + AT_rich Low_complexity Low_complexity 1 30 0 228 246 0 0 chr15 95446745 95446814 -5933707 + (TA)n Simple_repeat Simple_repeat 2 70 0 1547 191 4 0 chr15 95447266 95447538 -5932983 + AluJb SINE Alu 26 298 -14 212 298 167 9 chr15 95447561 95447675 -5932846 + MIR SINE MIR 118 249 -13 416 236 6 109 chr15 95448368 95448533 -5931988 - L2 LINE L2 -1 3312 3165 582 349 159 27 chr15 95448801 95449829 -5930692 - L2 LINE L2 -419 2895 1732 318 335 103 36 chr15 95449821 95450179 -5930342 + L2 LINE L2 2177 2558 -756 * 258 289 142 41 chr15 95450188 95450385 -5930136 + L2 LINE L2 2480 2696 -618 536 266 69 69 chr15 95450388 95450662 -5929859 + L2 LINE L2 3040 3313 0 23 0 0 0 chr15 95451253 95451276 -5929245 + AT_rich Low_complexity Low_complexity 1 23 0 631 89 0 41 chr15 95451937 95452060 -5928461 + (TCC)n Simple_repeat Simple_repeat 3 120 0 258 269 15 0 chr15 95452060 95452127 -5928394 + CT-rich Low_complexity Low_complexity 1 68 0 732 206 0 0 chr15 95452480 95452611 -5927910 - FLAM_A SINE Alu 0 133 3 799 269 76 100 chr15 95453123 95453823 -5926698 - MER21B LTR ERV1 -170 693 11 635 232 140 69 chr15 95453840 95454232 -5926289 - L1MC4 LINE L1 -142 7900 7481 777 177 0 8 chr15 95454284 95454414 -5926107 - FLAM_C SINE Alu -3 130 2 553 192 8 0 chr15 95454414 95454541 -5925980 - L1MC4 LINE L1 -624 7247 7058 2068 143 56 8 chr15 95455417 95455775 -5924746 + THE1C LTR MaLR 1 375 0 1411 204 89 4 chr15 95456167 95456436 -5924085 - MLT2B1 LTR ERVL -217 303 12 2182 166 36 32 chr15 95456436 95456984 -5923537 + MLT2A2 LTR ERVL 1 554 0 318 320 39 31 chr15 95457093 95457221 -5923300 + L2 LINE L2 3184 3312 -1 22 0 0 0 chr15 95457268 95457290 -5923231 + AT_rich Low_complexity Low_complexity 1 22 0 244 120 40 0 chr15 95458249 95458299 -5922222 + (TG)n Simple_repeat Simple_repeat 2 53 0 489 219 21 0 chr15 95458705 95458801 -5921720 + MLT1A2 LTR MaLR 4 101 -273 3844 99 10 13 chr15 95458810 95459500 -5921021 + L1PB1 LINE L1 5103 5791 -360 293 214 22 45 chr15 95459513 95459602 -5920919 + (CATATA)n Simple_repeat Simple_repeat 6 92 0 2443 85 23 6 chr15 95459603 95459957 -5920564 + L1PB1 LINE L1 5791 6150 -1 1258 190 8 41 chr15 95459974 95460242 -5920279 + MLT1A2 LTR MaLR 116 374 0 276 53 0 0 chr15 95460331 95460369 -5920152 + (T)n Simple_repeat Simple_repeat 1 38 0 2896 254 69 110 chr15 95460464 95462336 -5918185 + L2 LINE L2 382 2176 -1138 285 146 0 0 chr15 95462424 95462465 -5918056 + MER94 DNA DNA 18 58 -76 111 23 0 0 chr15 95462779 95462911 -5917610 + AT_rich Low_complexity Low_complexity 1 132 0 275 306 0 0 chr15 95463092 95463164 -5917357 + MLT1L LTR MaLR 443 514 -101 809 218 96 133 chr15 95463397 95463833 -5916688 - MLT1A1 LTR MaLR 0 365 9 2015 174 18 18 chr15 95464887 95465277 -5915244 + MLT1B LTR MaLR 1 390 0 2948 186 20 9 chr15 95465440 95465947 -5914574 + MLT2B3 LTR ERVL 1 516 -38 369 69 14 28 chr15 95465947 95466019 -5914502 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 2948 186 20 9 chr15 95466019 95466059 -5914462 + MLT2B3 LTR ERVL 516 554 0 1963 199 36 17 chr15 95466264 95466685 -5913836 + LTR3 LTR ERVK 1 429 -3 270 143 0 0 chr15 95466694 95466736 -5913785 + HERVK3 LTR ERVK 1 42 -7201 799 255 20 15 chr15 95468261 95468457 -5912064 + LTR40a LTR ERVL 3 199 -320 24235 130 21 2 chr15 95468461 95473122 -5907399 + L1PA8A LINE L1 1289 6036 -95 639 120 0 0 chr15 95473224 95473316 -5907205 + L1PA8 LINE L1 6064 6155 -17 2103 125 0 3 chr15 95473346 95473650 -5906871 + AluSg SINE Alu 1 303 -7 612 275 97 54 chr15 95473652 95473910 -5906611 + LTR40a LTR ERVL 193 461 -58 232 255 65 45 chr15 95474533 95474733 -5905788 - L1M4 LINE L1 -3005 3141 2938 434 302 74 40 chr15 95474850 95475148 -5905373 - L1M4 LINE L1 -3531 2615 2308 24 0 0 0 chr15 95475187 95475211 -5905310 + AT_rich Low_complexity Low_complexity 1 24 0 333 241 35 11 chr15 95475278 95475365 -5905156 + LTR33 LTR ERVL 433 521 0 1748 222 33 33 chr15 95478347 95478797 -5901724 + L1M4 LINE L1 497 946 -6543 698 223 88 9 chr15 95478835 95478939 -5901582 + L1M4 LINE L1 2923 3017 -4548 2503 71 0 3 chr15 95478939 95479249 -5901272 + AluY SINE Alu 2 310 -1 698 223 88 9 chr15 95479249 95479359 -5901162 + L1M4 LINE L1 3017 3154 -4411 1299 51 0 0 chr15 95479366 95479522 -5900999 + L1PA10 LINE L1 6002 6157 -11 1854 223 28 20 chr15 95480181 95480926 -5899595 + L1M4 LINE L1 3343 4098 -3467 4148 196 28 13 chr15 95480968 95482561 -5897960 + L1PA16 LINE L1 4249 5999 -167 304 157 326 0 chr15 95482663 95482752 -5897769 + L1PA16 LINE L1 6036 6153 -13 3161 209 33 50 chr15 95482754 95484329 -5896192 + L1MC1 LINE L1 4353 5901 -432 31 44 0 0 chr15 95485130 95485175 -5895346 + AT_rich Low_complexity Low_complexity 1 45 0 523 213 73 29 chr15 95485192 95485328 -5895193 - MLT1I LTR MaLR -40 369 228 364 305 24 51 chr15 95485421 95485569 -5894952 + L1MEc LINE L1 1512 1651 -4745 1410 233 0 14 chr15 95485569 95485936 -5894585 + AluJo SINE Alu 1 363 0 364 305 24 51 chr15 95485936 95486081 -5894440 + L1MEc LINE L1 1651 1798 -4598 320 222 0 0 chr15 95486096 95486168 -5894353 + L1M4 LINE L1 5695 5766 -1799 2046 258 22 15 chr15 95486212 95486886 -5893635 + L1M4 LINE L1 5916 6594 -971 * 4362 251 82 37 chr15 95486870 95487284 -5893237 - L1M4 LINE L1 -5060 1795 1401 387 73 0 0 chr15 95487284 95487339 -5893182 + (TG)n Simple_repeat Simple_repeat 2 56 0 4362 251 82 37 chr15 95487339 95488635 -5891886 - L1M4 LINE L1 -5454 1401 11 21 36 0 0 chr15 95489134 95489162 -5891359 + AT_rich Low_complexity Low_complexity 1 28 0 2001 89 85 4 chr15 95489895 95490176 -5890345 + AluY SINE Alu 1 304 -7 373 341 26 4 chr15 95490282 95490508 -5890013 - L1ME LINE L1 -319 5802 5572 447 19 0 0 chr15 95491542 95491594 -5888927 + (TG)n Simple_repeat Simple_repeat 1 52 0 283 277 110 52 chr15 95492041 95492196 -5888325 - MIR3 SINE MIR -5 203 40 1212 207 74 28 chr15 95492387 95492710 -5887811 - MER44D DNA MER2_type -1 608 1 1071 225 149 63 chr15 95493148 95493611 -5886910 - MLT1D LTR MaLR -2 503 1 216 273 198 94 chr15 95493734 95493862 -5886659 - L2 LINE L2 -1073 2241 2128 1397 186 80 4 chr15 95493862 95494016 -5886505 - AluJo SINE Alu -14 298 157 333 0 0 0 chr15 95494016 95494053 -5886468 + (TG)n Simple_repeat Simple_repeat 2 38 0 1397 186 80 4 chr15 95494053 95494172 -5886349 - AluJo SINE Alu -155 157 4 216 273 198 94 chr15 95494172 95494348 -5886173 - L2 LINE L2 -1186 2128 1972 2692 98 5 13 chr15 95494348 95494726 -5885795 + THE1C LTR MaLR 1 375 0 216 273 198 94 chr15 95494726 95494815 -5885706 - L2 LINE L2 -1342 1972 1806 2338 86 0 3 chr15 95494917 95495218 -5885303 + AluY SINE Alu 1 300 -11 483 111 8 42 chr15 95495269 95495372 -5885149 + L1M1 LINE L1 5593 5692 -511 269 195 78 0 chr15 95495375 95495452 -5885069 + L1M1 LINE L1 5773 5855 -445 1200 274 82 77 chr15 95495621 95496554 -5883967 + MER45C DNA AcHobo 1 937 -16 479 320 198 7 chr15 95496570 95496873 -5883648 - L2 LINE L2 -2348 966 606 594 198 66 53 chr15 95497045 95497121 -5883400 + L1ME1 LINE L1 5164 5238 -1121 2038 128 133 16 chr15 95497121 95497504 -5883017 - MSTA LTR MaLR 0 428 1 594 198 66 53 chr15 95497504 95497807 -5882714 + L1ME1 LINE L1 5238 5605 -754 2044 142 43 23 chr15 95497812 95497989 -5882532 + THE1B-int LTR MaLR 1249 1421 -230 1845 135 82 12 chr15 95497989 95498329 -5882192 + THE1B LTR MaLR 1 364 0 2044 142 43 23 chr15 95498329 95498546 -5881975 + THE1B-int LTR MaLR 1421 1651 0 2301 188 26 0 chr15 95498548 95498963 -5881558 + MSTA LTR MaLR 3 428 0 1249 234 81 51 chr15 95498972 95499275 -5881246 + L1ME1 LINE L1 5615 5942 -224 1629 168 50 80 chr15 95499275 95499673 -5880848 + MLT1B LTR MaLR 4 389 -1 1249 234 81 51 chr15 95499673 95499899 -5880622 + L1ME1 LINE L1 5942 6160 -6 426 120 0 0 chr15 95501908 95501983 -5878538 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 695 238 157 47 chr15 95503686 95503985 -5876536 + MER46C DNA MER2_type 2 333 -5 509 253 158 19 chr15 95504620 95504778 -5875743 + MER5A DNA MER1_type 4 183 -6 219 212 129 24 chr15 95505657 95505742 -5874779 - MIR SINE MIR -69 139 46 26 30 0 0 chr15 95505987 95506020 -5874501 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr15 95506260 95506282 -5874239 + AT_rich Low_complexity Low_complexity 1 22 0 613 288 97 9 chr15 95506538 95506878 -5873643 - MLT1I LTR MaLR -3 406 37 210 71 0 0 chr15 95508492 95508520 -5872001 + (GGGAGA)n Simple_repeat Simple_repeat 4 31 0 287 270 62 115 chr15 95509346 95509572 -5870949 - L2 LINE L2 0 3313 3100 236 231 19 0 chr15 95510811 95510863 -5869658 + GA-rich Low_complexity Low_complexity 3 55 0 2189 70 14 14 chr15 95512314 95512599 -5867922 - AluSx SINE Alu -17 295 11 925 114 8 8 chr15 95513980 95514111 -5866410 + AluSq/x SINE Alu 1 131 -182 420 20 0 0 chr15 95514126 95514175 -5866346 + (CA)n Simple_repeat Simple_repeat 2 50 0 420 111 0 0 chr15 95516444 95516507 -5864014 + (TG)n Simple_repeat Simple_repeat 1 63 0 2324 103 3 0 chr15 95516833 95517134 -5863387 + AluSq SINE Alu 1 302 -11 344 304 100 75 chr15 95517626 95517866 -5862655 - L2 LINE L2 -5 3267 3022 414 365 62 21 chr15 95518997 95519285 -5861236 - L3 LINE CR1 -23 1554 1255 431 266 112 70 chr15 95519301 95519613 -5860908 - L2 LINE L2 -1 3312 2988 235 351 54 49 chr15 95519873 95520058 -5860463 - L3 LINE CR1 -349 1228 1043 539 299 76 35 chr15 95521739 95521899 -5858622 - L2 LINE L2 -4 3309 3130 2110 127 0 3 chr15 95521899 95522206 -5858315 + AluSx SINE Alu 1 306 -6 539 299 76 35 chr15 95522206 95522333 -5858188 - L2 LINE L2 -183 3130 3010 21 71 0 0 chr15 95523625 95523667 -5856854 + AT_rich Low_complexity Low_complexity 1 42 0 395 359 7 0 chr15 95523723 95523865 -5856656 - MIR3 SINE MIR -1 207 65 810 190 55 161 chr15 95524037 95524348 -5856173 + MLT1A2 LTR MaLR 1 278 -112 426 211 32 0 chr15 95524423 95524518 -5856003 + MLT1A2 LTR MaLR 273 370 -4 308 276 43 9 chr15 95524711 95524827 -5855694 - L1ME LINE L1 -409 5712 5593 2197 140 0 0 chr15 95525169 95525469 -5855052 - AluSx SINE Alu -12 300 1 22 35 0 0 chr15 95525492 95525521 -5855000 + AT_rich Low_complexity Low_complexity 1 29 0 225 196 0 0 chr15 95525592 95525638 -5854883 + T-rich Low_complexity Low_complexity 1 46 0 2150 96 7 0 chr15 95528242 95528523 -5851998 + AluY SINE Alu 1 283 -28 294 179 0 0 chr15 95528523 95528579 -5851942 + (TA)n Simple_repeat Simple_repeat 1 56 0 351 225 12 52 chr15 95528582 95528710 -5851811 - L1MC4 LINE L1 -1339 6983 1959 596 257 51 23 chr15 95529128 95529303 -5851218 - MIR SINE MIR -1 261 82 294 326 71 35 chr15 95529528 95529577 -5850944 - MIR SINE MIR -115 147 101 2237 121 0 6 chr15 95529577 95529891 -5850630 + AluSx SINE Alu 1 312 0 294 326 71 35 chr15 95529891 95529982 -5850539 - MIR SINE MIR -161 101 2 2021 134 26 10 chr15 95530306 95530611 -5849910 + AluSx SINE Alu 1 310 -2 650 151 48 6 chr15 95530621 95530787 -5849734 + GA-rich Low_complexity Low_complexity 2 174 0 2126 74 42 3 chr15 95531194 95531477 -5849044 + AluSx SINE Alu 2 295 -17 26 30 0 0 chr15 95532193 95532226 -5848295 + AT_rich Low_complexity Low_complexity 1 33 0 290 235 0 12 chr15 95532886 95532971 -5847550 - L1MC4 LINE L1 -522 7520 7437 238 250 174 11 chr15 95533903 95533995 -5846526 + MIR SINE MIR 31 137 -71 1087 285 91 11 chr15 95534168 95534606 -5845915 + L2 LINE L2 2171 2643 -671 387 262 193 11 chr15 95536163 95536438 -5844083 - LTR50 LTR ERVL 0 795 471 634 272 172 4 chr15 95536491 95536723 -5843798 - LTR50 LTR ERVL -522 273 3 1000 264 159 12 chr15 95537999 95538420 -5842101 + L2 LINE L2 2350 2832 -482 186 43 0 0 chr15 95538424 95538447 -5842074 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 473 172 0 10 chr15 95538517 95538616 -5841905 + CT-rich Low_complexity Low_complexity 4 101 0 641 286 38 38 chr15 95538675 95538941 -5841580 + L2 LINE L2 3035 3300 -13 1881 258 124 14 chr15 95539484 95540427 -5840094 + L1ME3A LINE L1 5134 6168 -2 1734 62 108 0 chr15 95543568 95543809 -5836712 + L1PA8 LINE L1 5893 6159 -13 212 216 0 62 chr15 95543947 95544044 -5836477 + A-rich Low_complexity Low_complexity 2 92 0 746 179 139 6 chr15 95545212 95545385 -5835136 - MLT1B LTR MaLR -68 322 127 1358 120 28 109 chr15 95545388 95545795 -5834726 + LTR12 LTR ERV1 1 2032 -406 354 222 11 0 chr15 95545797 95545887 -5834634 + LTR30 LTR ERV1 553 643 -79 722 90 0 0 chr15 95545890 95545990 -5834531 + LTR12 LTR ERV1 483 582 -132 327 168 284 0 chr15 95545991 95546086 -5834435 - MLT1B LTR MaLR -265 125 4 198 188 104 0 chr15 95546988 95547036 -5833485 + MIR SINE MIR 129 181 -81 290 269 45 0 chr15 95547090 95547157 -5833364 + polypyrimidine Low_complexity Low_complexity 2 71 0 28 61 0 0 chr15 95547236 95547285 -5833236 + AT_rich Low_complexity Low_complexity 1 49 0 193 263 70 0 chr15 95547661 95547718 -5832803 - MIR SINE MIR -3 259 199 22 0 0 0 chr15 95548263 95548285 -5832236 + AT_rich Low_complexity Low_complexity 1 22 0 237 284 0 0 chr15 95550421 95550488 -5830033 + GA-rich Low_complexity Low_complexity 1 67 0 553 300 159 18 chr15 95552370 95552597 -5827924 - MIR SINE MIR 0 262 4 263 356 52 0 chr15 95552821 95552936 -5827585 + MIR SINE MIR 55 175 -87 47 19 0 0 chr15 95553097 95553151 -5827370 + AT_rich Low_complexity Low_complexity 1 54 0 14124 135 30 24 chr15 95557316 95559298 -5821223 - Tigger1 DNA MER2_type 0 2418 418 2153 86 13 16 chr15 95559298 95559602 -5820919 - AluSq SINE Alu -10 303 1 14124 135 30 24 chr15 95559602 95560023 -5820498 - Tigger1 DNA MER2_type -2000 418 1 320 119 24 48 chr15 95560303 95560387 -5820134 + CT-rich Low_complexity Low_complexity 4 85 0 207 0 0 0 chr15 95560387 95560410 -5820111 + (TC)n Simple_repeat Simple_repeat 1 23 0 2261 95 0 0 chr15 95560410 95560704 -5819817 - AluSc SINE Alu -15 294 1 266 213 0 0 chr15 95561280 95561327 -5819194 + MLT1B LTR MaLR 1 47 -343 245 185 0 38 chr15 95561342 95561399 -5819122 + MLT1B LTR MaLR 321 390 0 241 303 62 49 chr15 95561408 95561570 -5818951 - MIR SINE MIR -52 210 47 189 346 98 43 chr15 95561607 95561841 -5818680 + MIR SINE MIR 8 254 -8 404 155 52 10 chr15 95561895 95561992 -5818529 - L1MA10 LINE L1 -9 6325 6225 3354 250 43 40 chr15 95562009 95563319 -5817202 - L1MDa LINE L1 -1091 5124 3812 * 3382 250 51 38 chr15 95563313 95563634 -5816887 - L1MDa LINE L1 -2662 3553 3238 1435 160 120 4 chr15 95563634 95563909 -5816612 - AluJb SINE Alu -5 307 1 3382 250 51 38 chr15 95563909 95564409 -5816112 - L1MDa LINE L1 -2977 3238 2746 1992 91 4 0 chr15 95564409 95564672 -5815849 - AluY SINE Alu -47 264 1 3382 250 51 38 chr15 95564672 95565227 -5815294 - L1MDa LINE L1 -3469 2746 2150 2134 270 133 14 chr15 95565241 95566194 -5814327 - L1MDa LINE L1 -4923 1473 407 714 253 83 49 chr15 95566229 95566494 -5814027 - L1MDa LINE L1 -6084 312 39 27 29 0 0 chr15 95566705 95566739 -5813782 + AT_rich Low_complexity Low_complexity 1 34 0 2213 102 0 3 chr15 95566840 95567135 -5813386 - AluSc SINE Alu -15 294 1 296 91 0 0 chr15 95567473 95567517 -5813004 + MADE1 DNA Mariner 2 45 -35 25 0 0 0 chr15 95568150 95568175 -5812346 + AT_rich Low_complexity Low_complexity 1 25 0 369 43 0 0 chr15 95569770 95569817 -5810704 + (TG)n Simple_repeat Simple_repeat 2 48 0 25 51 0 0 chr15 95570130 95570169 -5810352 + AT_rich Low_complexity Low_complexity 1 39 0 318 287 86 29 chr15 95570326 95570500 -5810021 - MIR SINE MIR -19 243 60 554 101 0 0 chr15 95570528 95570607 -5809914 + MADE1 DNA Mariner 2 80 0 207 146 0 0 chr15 95573934 95573975 -5806546 + (TCCA)n Simple_repeat Simple_repeat 4 44 0 2164 262 71 17 chr15 95574099 95575108 -5805413 - L1ME2 LINE L1 -39 6125 5060 3981 263 33 14 chr15 95575111 95576507 -5804014 + L1M4 LINE L1 2324 3746 -2400 414 174 0 14 chr15 95576507 95576576 -5803945 + Tigger2 DNA MER2_type 2 69 -2649 * 2354 178 43 2 chr15 95576574 95576995 -5803526 + Tigger2 DNA MER2_type 2280 2717 -1 2364 209 73 29 chr15 95576995 95577762 -5802759 + L1M4 LINE L1 3745 4545 -1601 2341 226 58 8 chr15 95577766 95578426 -5802095 + L1M4 LINE L1 4598 5290 -856 417 172 0 13 chr15 95578439 95578510 -5802011 + MLT1A1 LTR MaLR 230 293 -72 818 289 95 61 chr15 95578510 95579893 -5800628 - L1MDa LINE L1 -3930 2331 895 218 217 0 17 chr15 95579893 95579953 -5800568 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 1503 291 63 52 chr15 95579985 95580844 -5799677 - L1MDa LINE L1 -5201 869 2 200 212 61 0 chr15 95580909 95580975 -5799546 + (TGAA)n Simple_repeat Simple_repeat 3 72 0 183 327 72 48 chr15 95581636 95581844 -5798677 + L2 LINE L2 2645 2857 -457 1645 129 11 33 chr15 95581989 95582260 -5798261 - AluSx SINE Alu -47 265 1 23 0 0 0 chr15 95582323 95582346 -5798175 + AT_rich Low_complexity Low_complexity 1 23 0 201 39 0 0 chr15 95582774 95582800 -5797721 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 210 105 0 0 chr15 95582803 95582841 -5797680 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 1648 281 99 74 chr15 95582848 95583964 -5796557 - MER69B DNA AcHobo -82 1144 1 1859 116 7 50 chr15 95585522 95585824 -5794697 - AluSx SINE Alu -21 291 3 703 203 114 25 chr15 95586610 95586812 -5793709 + MIR SINE MIR 8 227 -35 458 156 0 0 chr15 95586996 95587073 -5793448 + MADE1 DNA Mariner 1 77 -3 332 260 0 10 chr15 95588804 95588900 -5791621 - L1ME3 LINE L1 -199 5963 5869 378 290 38 27 chr15 95589037 95589223 -5791298 - L1M4 LINE L1 -1975 4171 3984 801 160 20 27 chr15 95589244 95589394 -5791127 - FRAM SINE Alu -16 160 12 594 317 42 24 chr15 95589413 95589795 -5790726 - L1M4 LINE L1 -2165 3981 3593 539 143 0 0 chr15 95590509 95590593 -5789928 + FLAM_A SINE Alu 43 126 -16 33 66 0 0 chr15 95590786 95590847 -5789674 + AT_rich Low_complexity Low_complexity 1 61 0 228 322 59 59 chr15 95591075 95591227 -5789294 + MIR SINE MIR 15 166 -96 2431 60 0 10 chr15 95591349 95591648 -5788873 - AluY SINE Alu -4 307 12 2068 132 3 10 chr15 95591764 95592074 -5788447 - AluSx SINE Alu -4 308 1 205 171 0 0 chr15 95592357 95592392 -5788129 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7216 48 3 0 chr15 95593582 95594476 -5786045 + L1PA5 LINE L1 5254 6150 -4 873 242 8 30 chr15 95594487 95594751 -5785770 - L1ME2 LINE L1 -6 6158 5901 421 262 131 13 chr15 95595475 95595780 -5784741 - L1MEc LINE L1 -3997 2399 2059 377 293 59 19 chr15 95595786 95596042 -5784479 - L1MEc LINE L1 -5074 1131 866 229 311 21 42 chr15 95596050 95596243 -5784278 + L1ME LINE L1 11 199 -6660 2838 177 111 47 chr15 95596445 95597282 -5783239 + pTR5 LTR ERV1 743 1633 -805 1160 82 58 6 chr15 95597276 95597447 -5783074 + LTR12 LTR ERV1 535 714 0 * 4683 259 54 48 chr15 95597980 95598356 -5782165 + L1ME LINE L1 3273 3645 -3312 1832 120 14 21 chr15 95598356 95598640 -5781881 + AluSx SINE Alu 1 282 -30 4683 259 54 48 chr15 95598640 95600509 -5780012 + L1ME LINE L1 3645 5533 -1424 834 317 62 27 chr15 95600518 95600957 -5779564 - MLT1E3 LTR MaLR -4 620 167 1180 117 0 12 chr15 95600964 95601135 -5779386 - AluSc SINE Alu -3 306 138 451 229 59 0 chr15 95601140 95601258 -5779263 - MLT1E3 LTR MaLR -441 213 89 1654 260 39 15 chr15 95601306 95602312 -5778209 + L1ME LINE L1 5530 6547 -430 255 324 50 62 chr15 95602616 95602795 -5777726 - MIR SINE MIR 0 262 86 187 133 44 0 chr15 95602851 95602896 -5777625 + (TAA)n Simple_repeat Simple_repeat 2 48 0 548 186 0 16 chr15 95603826 95603955 -5776566 + GA-rich Low_complexity Low_complexity 2 128 0 27 29 0 0 chr15 95603969 95604003 -5776518 + AT_rich Low_complexity Low_complexity 1 34 0 1329 119 112 46 chr15 95606379 95606639 -5773882 + LTR12 LTR ERV1 1 277 -437 234 265 20 10 chr15 95606639 95606737 -5773784 + LTR30 LTR ERV1 544 642 -80 651 141 0 0 chr15 95606739 95606838 -5773683 + LTR12 LTR ERV1 481 579 -135 219 178 0 22 chr15 95608265 95608310 -5772211 + T-rich Low_complexity Low_complexity 5 48 0 24 32 0 0 chr15 95609054 95609085 -5771436 + AT_rich Low_complexity Low_complexity 1 31 0 233 299 152 47 chr15 95610259 95610322 -5770199 - MIR SINE MIR 0 262 207 1903 110 0 18 chr15 95610322 95610594 -5769927 + AluSq SINE Alu 29 295 -18 233 299 152 47 chr15 95610594 95610741 -5769780 - MIR SINE MIR -55 207 30 213 222 0 0 chr15 95611014 95611059 -5769462 + (CA)n Simple_repeat Simple_repeat 2 46 0 359 224 13 0 chr15 95611224 95611300 -5769221 + MER103 DNA DNA 33 109 -57 449 278 50 39 chr15 95612136 95612316 -5768205 - MIR SINE MIR -16 246 65 212 136 45 23 chr15 95612372 95612416 -5768105 - MIR SINE MIR -205 57 13 573 291 94 20 chr15 95612489 95612733 -5767788 - MIR SINE MIR 0 262 1 28 79 0 0 chr15 95613556 95613619 -5766902 + AT_rich Low_complexity Low_complexity 1 63 0 399 190 20 0 chr15 95613619 95613719 -5766802 - L1MA8 LINE L1 -10 6281 6180 3437 202 14 31 chr15 95613719 95614823 -5765698 - L1MA6 LINE L1 -278 5846 4759 1994 229 81 18 chr15 95615074 95615680 -5764841 - L1MA6 LINE L1 -1222 4748 4105 1125 207 65 49 chr15 95615681 95616126 -5764395 - L1MA6 LINE L1 -2605 3365 2914 * 3258 250 74 26 chr15 95616112 95618213 -5762308 - L1M4 LINE L1 -3480 2902 799 329 358 11 24 chr15 95618360 95618560 -5761961 - L1MA6 LINE L1 -5213 678 218 387 0 0 0 chr15 95618732 95618775 -5761746 + (CA)n Simple_repeat Simple_repeat 1 43 0 4307 86 16 0 chr15 95619265 95619844 -5760677 - LTR8 LTR ERV1 -102 589 2 27750 73 11 17 chr15 95619846 95623707 -5756814 - HUERS-P1 LTR ERV1 -1 6262 2424 2321 109 19 30 chr15 95624210 95624576 -5755945 + THE1B LTR MaLR 1 362 -2 393 146 186 81 chr15 95625382 95625544 -5754977 - MLT1H LTR MaLR 0 567 384 2200 108 13 13 chr15 95625643 95625950 -5754571 + AluSp SINE Alu 1 307 -6 1964 113 33 7 chr15 95626874 95627202 -5753319 + AluSx SINE Alu 1 335 0 21 0 0 0 chr15 95627357 95627378 -5753143 + AT_rich Low_complexity Low_complexity 1 21 0 576 278 98 48 chr15 95627779 95628236 -5752285 + MER113 DNA MER1_type? 38 517 -4 184 271 212 13 chr15 95629228 95629379 -5751142 - L2 LINE L2 -4 3309 3129 245 29 29 0 chr15 95631011 95631045 -5749476 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 301 267 111 7 chr15 95631977 95632112 -5748409 + MER103 DNA DNA 9 157 -9 270 339 6 12 chr15 95632614 95632633 -5747888 + (TA)n Simple_repeat Simple_repeat 1 19 -145 204 40 0 0 chr15 95632633 95632658 -5747863 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 270 339 6 12 chr15 95632658 95632716 -5747805 + (TA)n Simple_repeat Simple_repeat 19 76 -88 2111 130 39 33 chr15 95632716 95633078 -5747443 + THE1B LTR MaLR 1 364 0 270 339 6 12 chr15 95633078 95633164 -5747357 + (TA)n Simple_repeat Simple_repeat 76 164 0 281 330 0 0 chr15 95633168 95633265 -5747256 + MIR SINE MIR 166 262 0 204 333 58 23 chr15 95633656 95633743 -5746778 - L2 LINE L2 -22 3291 3202 221 319 173 11 chr15 95634149 95634340 -5746181 + L2 LINE L2 2831 3052 -220 327 104 0 0 chr15 95634424 95634472 -5746049 + (CA)n Simple_repeat Simple_repeat 2 49 0 291 54 0 0 chr15 95634472 95634509 -5746012 + (TG)n Simple_repeat Simple_repeat 1 37 0 351 0 0 0 chr15 95634586 95634625 -5745896 + (CA)n Simple_repeat Simple_repeat 2 40 0 347 202 34 17 chr15 95635702 95635821 -5744700 + GA-rich Low_complexity Low_complexity 2 122 0 1472 225 46 67 chr15 95635821 95636296 -5744225 - MLT1C LTR MaLR -2 465 1 28 0 0 0 chr15 95636441 95636469 -5744052 + AT_rich Low_complexity Low_complexity 1 28 0 252 347 208 25 chr15 95637132 95637680 -5742841 + L2 LINE L2 2325 2972 -342 30559 33 14 1 chr15 95637759 95643783 -5736738 - L1PA2 LINE L1 -4 6151 1 2067 112 32 0 chr15 95643810 95644088 -5736433 - AluSg SINE Alu -23 287 1 266 270 160 46 chr15 95644355 95644662 -5735859 - MLT1J LTR MaLR -54 457 116 362 261 126 67 chr15 95644895 95645133 -5735388 - L1MC4a LINE L1 -1841 5967 5716 425 304 54 0 chr15 95645177 95645325 -5735196 + MIR SINE MIR 1 156 -106 860 212 0 0 chr15 95645341 95645487 -5735034 - FRAM SINE Alu -21 155 10 4254 238 64 29 chr15 95645590 95646127 -5734394 - L1MD2 LINE L1 -13 6740 6223 1250 241 73 59 chr15 95646127 95646621 -5733900 - MLT1D LTR MaLR 0 505 5 4254 238 64 29 chr15 95646621 95648658 -5731863 - L1MD2 LINE L1 -530 6223 4081 2550 103 0 8 chr15 95648665 95649032 -5731489 - L1PA13 LINE L1 0 6163 5800 2230 90 10 0 chr15 95649032 95649344 -5731177 + L1P4 LINE L1 5372 5686 -482 1421 287 60 6 chr15 95649362 95650063 -5730458 - L1MD2 LINE L1 -2452 4088 3350 22 35 0 0 chr15 95650089 95650118 -5730403 + AT_rich Low_complexity Low_complexity 1 29 0 406 220 33 93 chr15 95650129 95650343 -5730178 - L1MD2 LINE L1 -49 6310 6110 1192 219 97 30 chr15 95650361 95650903 -5729618 - L1MD2 LINE L1 -3218 3322 2818 9713 93 1 0 chr15 95650903 95653031 -5727490 - L1PA7 LINE L1 -1 6153 4030 1192 219 97 30 chr15 95653031 95653608 -5726913 - L1MD2 LINE L1 -3722 2818 2083 1413 233 71 35 chr15 95653699 95654305 -5726216 - L1MD2 LINE L1 -4461 2079 1452 469 232 101 71 chr15 95654334 95654532 -5725989 - L1MA9 LINE L1 -5 6286 6083 1287 191 26 48 chr15 95654535 95654844 -5725677 - L1MC1 LINE L1 -7 6326 6025 577 312 49 40 chr15 95654894 95655218 -5725303 + MLT1I LTR MaLR 81 407 -2 889 162 40 61 chr15 95655353 95655581 -5724940 - L1MC1 LINE L1 -97 6236 6014 900 298 36 44 chr15 95655585 95655948 -5724573 + MLT1I LTR MaLR 50 409 0 244 173 25 99 chr15 95656455 95656536 -5723985 + LTR67 LTR ERVL 458 532 -25 4530 181 19 19 chr15 95656902 95657866 -5722655 - L1PB4 LINE L1 -1 6155 5190 201 74 0 0 chr15 95657869 95657896 -5722625 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 322 228 16 24 chr15 95658769 95658896 -5721625 + L1M LINE L1 5297 5422 -756 225 0 0 0 chr15 95659637 95659662 -5720859 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 2253 206 82 53 chr15 95659664 95660338 -5720183 + L1MC3 LINE L1 7048 7740 -45 266 321 156 18 chr15 95660389 95660607 -5719914 + L3 LINE CR1 1288 1535 -42 180 0 0 0 chr15 95660960 95660980 -5719541 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3907 177 89 8 chr15 95662054 95662844 -5717677 - L1MC1 LINE L1 -11 6322 5469 1240 156 8 36 chr15 95662827 95663077 -5717444 - L1 LINE L1 -1508 5659 5417 * 43721 37 4 4 chr15 95663076 95669219 -5711302 - L1PA3 LINE L1 -3 6152 9 8340 209 52 91 chr15 95669223 95675197 -5705324 - L1 LINE L1 -1727 5440 1 749 200 64 15 chr15 95675179 95675405 -5705116 - L1MC/D LINE L1 -838 5506 5274 * 6234 38 7 12 chr15 95675379 95676197 -5704324 - L1PA7 LINE L1 -4 6150 5258 588 173 27 0 chr15 95676197 95676307 -5704214 + L1M2a LINE L1 157 269 -6899 1268 216 129 0 chr15 95676308 95676586 -5703935 + L1M2a LINE L1 346 659 -6509 619 227 13 67 chr15 95676592 95676830 -5703691 - L1MC/D LINE L1 -1198 4948 4724 265 275 12 12 chr15 95676847 95676927 -5703594 + L1M2a LINE L1 658 737 -6431 * 3295 80 2 0 chr15 95676920 95677372 -5703149 + L1P LINE L1 4777 5229 -917 2840 246 37 41 chr15 95677359 95678533 -5701988 - L1MEc LINE L1 -794 5632 4464 * 2791 238 61 33 chr15 95678519 95679507 -5701014 - L1MEc LINE L1 -2209 4217 3203 * 1367 207 100 32 chr15 95679544 95679955 -5700566 - MSTB2 LTR MaLR -12 445 7 1438 204 23 29 chr15 95679979 95680323 -5700198 - L1MA9 LINE L1 -38 6274 5933 1880 242 14 21 chr15 95680326 95680897 -5699624 - L1MEc LINE L1 -3211 3215 2649 533 81 0 0 chr15 95680908 95680982 -5699539 - L1P LINE L1 -767 5387 5314 1353 232 7 7 chr15 95681022 95681324 -5699197 - AluJo SINE Alu 0 302 1 339 254 44 0 chr15 95681327 95681441 -5699080 - L1MEc LINE L1 -3965 2642 2524 1040 193 102 0 chr15 95681442 95681686 -5698835 - L1MEc LINE L1 -5100 1326 1058 1571 209 82 20 chr15 95681686 95682078 -5698443 + MSTC LTR MaLR 1 416 -12 3093 237 36 55 chr15 95682092 95683146 -5697375 - L1MEc LINE L1 -5368 1058 25 289 284 12 12 chr15 95683554 95683635 -5696886 - MER94 DNA DNA 0 134 54 228 344 93 26 chr15 95684216 95684367 -5696154 + L2 LINE L2 2708 2868 -446 22 0 0 0 chr15 95684746 95684768 -5695753 + AT_rich Low_complexity Low_complexity 1 22 0 201 147 0 0 chr15 95687337 95687371 -5693150 + (GGAAA)n Simple_repeat Simple_repeat 3 36 0 21 0 0 0 chr15 95688036 95688057 -5692464 + AT_rich Low_complexity Low_complexity 1 21 0 277 187 176 22 chr15 95688977 95689068 -5691453 + MLT1L LTR MaLR 509 613 -2 2260 148 16 56 chr15 95689199 95689631 -5690890 - MSTB1 LTR MaLR -17 415 1 2233 104 0 7 chr15 95691646 95691944 -5688577 + AluSx SINE Alu 1 296 -16 855 223 14 24 chr15 95693294 95693581 -5686940 - L1M4 LINE L1 -848 5298 5015 2630 207 51 1 chr15 95693611 95694376 -5686145 + L1MB3 LINE L1 5323 6176 -7 2629 196 57 49 chr15 95694676 95695435 -5685086 - L1MB8 LINE L1 -1 6177 5413 2003 142 37 0 chr15 95696355 95696651 -5683870 - AluSx SINE Alu -5 307 1 1124 169 34 123 chr15 95699183 95699533 -5680988 - L1MA8 LINE L1 -22 6290 5972 2651 281 52 23 chr15 95700352 95701359 -5679162 + HERVL LTR ERVL 1372 2407 -3357 378 0 0 0 chr15 95701449 95701491 -5679030 + (TG)n Simple_repeat Simple_repeat 2 43 0 358 280 18 20 chr15 95701523 95701732 -5678789 + HERVL LTR ERVL 4577 4763 -891 2493 65 0 0 chr15 95701923 95702216 -5678305 - AluY SINE Alu -18 293 1 329 260 0 14 chr15 95703794 95703867 -5676654 - L2 LINE L2 0 3272 3201 1846 157 64 14 chr15 95704588 95704945 -5675576 + THE1C LTR MaLR 1 375 0 9244 113 65 43 chr15 95704945 95706491 -5674030 + THE1C-int LTR MaLR 1 1580 0 1975 134 64 20 chr15 95706493 95706850 -5673671 + THE1C LTR MaLR 3 375 0 252 309 32 0 chr15 95707909 95708003 -5672518 - MLT1J LTR MaLR -331 180 84 2394 88 13 0 chr15 95709224 95709648 -5670873 - AluSp SINE Alu 0 428 1 21 36 0 0 chr15 95709658 95709686 -5670835 + AT_rich Low_complexity Low_complexity 1 28 0 2678 183 70 23 chr15 95710802 95711377 -5669144 - MER21B LTR ERV1 -14 849 248 1011 215 56 21 chr15 95711554 95711787 -5668734 - MER21B LTR ERV1 -622 241 1 2103 287 77 37 chr15 95711997 95712145 -5668376 - L1ME LINE L1 -4512 1568 1427 180 77 0 0 chr15 95712145 95712171 -5668350 + (TA)n Simple_repeat Simple_repeat 2 27 0 2103 287 77 37 chr15 95712171 95712541 -5667980 - L1ME LINE L1 -4653 1427 1073 3802 141 72 67 chr15 95712541 95713320 -5667201 - LTR39 LTR ERV1 0 783 1 2103 287 77 37 chr15 95713320 95714313 -5666208 - L1ME LINE L1 -5007 1073 10 51 0 0 0 chr15 95714877 95714928 -5665593 + AT_rich Low_complexity Low_complexity 1 51 0 192 77 0 0 chr15 95715456 95715482 -5665039 + (A)n Simple_repeat Simple_repeat 1 26 0 291 235 6 27 chr15 95716156 95716339 -5664182 + (TA)n Simple_repeat Simple_repeat 1 179 0 911 302 28 26 chr15 95716412 95716945 -5663576 - L1ME3A LINE L1 -329 5841 5308 186 347 0 0 chr15 95718036 95718111 -5662410 + MIR SINE MIR 74 148 -114 189 0 0 0 chr15 95718424 95718445 -5662076 + (GA)n Simple_repeat Simple_repeat 2 22 0 1186 162 4 44 chr15 95718546 95718774 -5661747 - MER20 DNA MER1_type 0 219 1 1328 183 76 28 chr15 95719167 95719456 -5661065 - AluJo SINE Alu -9 303 1 622 250 40 16 chr15 95720128 95720322 -5660199 - MLT2B1 LTR ERVL 0 520 343 809 214 5 16 chr15 95720613 95720805 -5659716 - MLT2B1 LTR ERVL -321 199 10 577 300 60 21 chr15 95721754 95721987 -5658534 - MIR SINE MIR -19 243 2 433 204 19 19 chr15 95723042 95723150 -5657371 + MER81 DNA DNA 6 113 -1 234 0 0 0 chr15 95724747 95724773 -5655748 + (T)n Simple_repeat Simple_repeat 1 26 0 292 331 88 39 chr15 95725444 95725601 -5654920 - MIR SINE MIR -70 138 30 289 277 27 18 chr15 95725892 95726004 -5654517 + MER103 DNA DNA 47 159 -7 200 340 19 48 chr15 95726004 95726107 -5654414 - MIR SINE MIR -92 116 17 1549 117 26 22 chr15 95726402 95726632 -5653889 + 7SLRNA srpRNA srpRNA 1 231 -89 446 372 33 6 chr15 95726957 95727140 -5653381 - MER91A DNA MER1_type 0 196 9 333 309 58 7 chr15 95727818 95727957 -5652564 + MIR SINE MIR 20 165 -97 423 272 142 42 chr15 95778936 95779175 -5601346 - L1ME1 LINE L1 -6 6396 6134 893 276 55 111 chr15 95779179 95779749 -5600772 + MLT2B2 LTR ERVL 15 552 -2 2602 238 47 8 chr15 95779751 95780841 -5599680 - L1ME1 LINE L1 -261 6139 5007 5875 169 13 35 chr15 95781273 95782460 -5598061 + L1P LINE L1 4198 5357 -789 1254 256 24 24 chr15 95782457 95782883 -5597638 - L1ME1 LINE L1 -3101 3281 2856 * 3515 149 16 2 chr15 95782892 95783409 -5597112 + MER1A DNA MER1_type 6 529 0 5024 203 47 21 chr15 95783410 95784844 -5595677 - L1ME1 LINE L1 -3540 2842 1368 1647 155 14 80 chr15 95784844 95785206 -5595315 - MER44D DNA MER2_type -1 608 1 5024 203 47 21 chr15 95785206 95785277 -5595244 - L1ME1 LINE L1 -5014 1368 1300 703 204 24 0 chr15 95785368 95785535 -5594986 + L1MB5 LINE L1 6003 6173 -1 22 70 0 0 chr15 95785536 95785579 -5594942 + AT_rich Low_complexity Low_complexity 1 43 0 5492 214 27 9 chr15 95785592 95786846 -5593675 - L1PA15 LINE L1 -846 5300 4024 4962 156 16 3 chr15 95786847 95787700 -5592821 + L1PA15 LINE L1 5297 6160 -5 204 204 0 0 chr15 95787828 95787872 -5592649 + (CA)n Simple_repeat Simple_repeat 1 44 0 1091 257 73 26 chr15 95787877 95788262 -5592259 - L1MC/D LINE L1 -2089 5719 5317 269 211 53 21 chr15 95788286 95788381 -5592140 + (CATATA)n Simple_repeat Simple_repeat 1 98 0 355 289 24 60 chr15 95788655 95788899 -5591622 - L1MC/D LINE L1 -1216 4930 4693 2263 62 0 17 chr15 95790216 95790549 -5589972 - AluY SINE Alu 0 328 1 338 165 59 0 chr15 95790692 95790777 -5589744 + L1MC4 LINE L1 6614 6703 -1339 233 150 0 0 chr15 95790777 95790817 -5589704 + L1MC4 LINE L1 6664 6703 -1339 * 248 291 47 0 chr15 95790809 95790895 -5589626 - L1MC4 LINE L1 -1339 6703 6614 284 137 0 0 chr15 95790916 95790967 -5589554 + MER4-int LTR ERV1 1112 1162 -5436 289 246 0 9 chr15 95790972 95791079 -5589442 + L1MC4 LINE L1 2006 6983 -1339 252 302 0 0 chr15 95791024 95791110 -5589411 - L1MC4 LINE L1 -1340 6702 6617 * 317 189 27 0 chr15 95791112 95791186 -5589335 + (CATATA)n Simple_repeat Simple_repeat 5 80 0 398 298 18 26 chr15 95791261 95791375 -5589146 + MER81 DNA DNA 1 113 -1 24 0 0 0 chr15 95792578 95792602 -5587919 + AT_rich Low_complexity Low_complexity 1 24 0 432 276 8 16 chr15 95793280 95793403 -5587118 - MIR SINE MIR -21 241 120 926 62 0 0 chr15 95793616 95793728 -5586793 + AluY SINE Alu 191 302 -9 2817 104 19 5 chr15 95793768 95794183 -5586338 + L1PA11 LINE L1 5750 6170 -4 23 33 0 0 chr15 95794916 95794946 -5585575 + AT_rich Low_complexity Low_complexity 1 30 0 186 71 0 0 chr15 95795235 95795263 -5585258 + (TA)n Simple_repeat Simple_repeat 1 28 0 2109 128 75 20 chr15 95795340 95795685 -5584836 + THE1B LTR MaLR 1 364 0 648 303 38 38 chr15 95795776 95796037 -5584484 - MIR SINE MIR 0 262 2 489 253 110 99 chr15 95796875 95797466 -5583055 + L2 LINE L2 2667 3251 -62 397 275 64 78 chr15 95798498 95798639 -5581882 - L2 LINE L2 0 3313 3175 1699 50 5 9 chr15 95798639 95798860 -5581661 + L1PA8 LINE L1 5946 6165 -7 397 275 64 78 chr15 95798860 95798936 -5581585 - L2 LINE L2 -138 3175 3099 507 194 0 0 chr15 95799087 95799195 -5581326 + (CA)n Simple_repeat Simple_repeat 1 108 0 241 157 0 71 chr15 95799199 95799269 -5581252 - L1MC4 LINE L1 -1340 6702 6638 2339 199 10 43 chr15 95799272 95799765 -5580756 - MLT2B1 LTR ERVL -43 477 1 419 287 49 0 chr15 95799939 95800061 -5580460 + MLT1J LTR MaLR 378 505 -6 325 357 63 6 chr15 95800132 95800312 -5580209 - MIR SINE MIR -54 208 19 3893 289 77 23 chr15 95802480 95803847 -5576674 - ERVL-E LTR ERVL -1608 4156 2717 641 283 85 0 chr15 95803859 95804036 -5576485 + MER58C DNA MER1_type 1 192 -23 2531 303 93 57 chr15 95804048 95805608 -5574913 - ERVL-E LTR ERVL -3061 2703 955 1468 156 38 86 chr15 95805608 95805922 -5574599 + AluJo SINE Alu 1 299 -13 2531 303 93 57 chr15 95805922 95806600 -5573921 - ERVL-E LTR ERVL -4809 955 303 1685 298 33 28 chr15 95806830 95807407 -5573114 - MLT2E LTR ERVL 0 628 49 233 328 46 0 chr15 95807418 95807515 -5573006 + MIR SINE MIR 52 151 -63 493 309 100 23 chr15 95807727 95807947 -5572574 + MIR SINE MIR 26 262 0 212 274 97 0 chr15 95808102 95808164 -5572357 + L2 LINE L2 3184 3251 -21 1884 45 65 8 chr15 95808485 95808732 -5571789 + L1PA3 LINE L1 5892 6152 -3 402 353 115 7 chr15 95810276 95810667 -5569854 + L2 LINE L2 2639 3067 -246 834 275 83 58 chr15 95810667 95811055 -5569466 + L2 LINE L2 2517 2894 -419 1241 19 0 31 chr15 95811055 95811214 -5569307 - L1PA5 LINE L1 0 6154 6001 834 275 83 58 chr15 95811214 95811602 -5568919 + L2 LINE L2 2894 3309 -4 309 260 278 6 chr15 95811972 95812141 -5568380 - MER5C DNA MER1_type 0 324 110 26 0 0 0 chr15 95812596 95812622 -5567899 + AT_rich Low_complexity Low_complexity 1 26 0 1997 137 3 0 chr15 95813356 95813648 -5566873 + AluSx SINE Alu 3 295 -17 237 275 147 9 chr15 95813758 95813867 -5566654 - MER5C DNA MER1_type -200 124 1 3674 40 0 0 chr15 95813871 95814318 -5566203 + L1PA4 LINE L1 5705 6151 -4 1550 268 235 60 chr15 95814332 95816038 -5564483 + L2 LINE L2 1316 3312 -1 340 242 48 65 chr15 95816093 95816217 -5564304 + HAL1 LINE L1 1321 1442 -1065 23 0 0 0 chr15 95816438 95816461 -5564060 + AT_rich Low_complexity Low_complexity 1 23 0 183 205 0 0 chr15 95817384 95817423 -5563098 + (TAA)n Simple_repeat Simple_repeat 3 41 0 455 288 60 74 chr15 95817441 95817656 -5562865 - MIR SINE MIR -21 241 30 6342 92 20 0 chr15 95818435 95819770 -5560751 + L1PA8 LINE L1 4814 6171 -1 252 111 0 0 chr15 95820376 95820412 -5560109 - U2 snRNA snRNA -152 36 1 286 303 143 0 chr15 95822635 95822754 -5557767 - MIR SINE MIR -19 243 108 2115 118 0 22 chr15 95823087 95823402 -5557119 + AluSg SINE Alu 3 310 0 759 180 53 0 chr15 95823647 95823797 -5556724 + FAM SINE Alu 10 167 -18 303 198 21 73 chr15 95824043 95824139 -5556382 - L1MCa LINE L1 -4342 2084 1994 * 309 277 21 21 chr15 95824063 95824157 -5556364 + L1MC4 LINE L1 6611 6704 -1338 * 365 234 9 28 chr15 95824122 95824229 -5556292 - L1MC4 LINE L1 -1339 6703 6599 395 250 43 17 chr15 95825106 95825222 -5555299 - MLT1J2 LTR MaLR -69 381 263 244 274 28 30 chr15 95825295 95825412 -5555109 - MLT1J2 LTR MaLR -305 142 17 715 324 112 37 chr15 95828595 95829212 -5551309 - MLT2F LTR ERVL 0 663 1 23 33 0 0 chr15 95829894 95829924 -5550597 + AT_rich Low_complexity Low_complexity 1 30 0 295 97 16 16 chr15 95829958 95830020 -5550501 + (CA)n Simple_repeat Simple_repeat 2 63 0 238 319 0 0 chr15 95830133 95830224 -5550297 + (TA)n Simple_repeat Simple_repeat 2 92 0 283 224 128 16 chr15 95830268 95830393 -5550128 - L1ME LINE L1 -251 5870 5732 21 0 0 0 chr15 95830773 95830794 -5549727 + AT_rich Low_complexity Low_complexity 1 21 0 213 228 11 22 chr15 95831589 95831681 -5548840 + GA-rich Low_complexity Low_complexity 2 92 0 206 267 33 0 chr15 95831978 95832038 -5548483 + L2 LINE L2 3208 3269 -3 214 143 20 20 chr15 95832116 95832165 -5548356 + A-rich Low_complexity Low_complexity 2 50 0 21 36 0 0 chr15 95832165 95832193 -5548328 + AT_rich Low_complexity Low_complexity 1 28 0 27 49 0 0 chr15 95832325 95832366 -5548155 + AT_rich Low_complexity Low_complexity 1 41 0 183 277 0 92 chr15 95832471 95832536 -5547985 + L2 LINE L2 3212 3270 -2 1974 137 124 0 chr15 95832760 95833082 -5547439 + THE1B LTR MaLR 3 364 0 208 359 59 12 chr15 95833434 95833604 -5546917 + MIR SINE MIR 20 197 -65 248 264 33 33 chr15 95833952 95834043 -5546478 - MIR SINE MIR -108 154 64 239 274 0 0 chr15 95834068 95834119 -5546402 - MIR3 SINE MIR -54 154 104 184 300 0 14 chr15 95834164 95834234 -5546287 + MIR SINE MIR 53 121 -141 429 208 24 48 chr15 95834345 95834470 -5546051 + MER103 DNA DNA 2 123 -43 492 253 57 0 chr15 95834619 95834777 -5545744 - L1ME3 LINE L1 -94 6068 5902 3122 226 44 27 chr15 95834863 95835838 -5544683 - L1ME1 LINE L1 -5 6161 5172 2128 257 40 18 chr15 95835940 95836734 -5543787 - L1ME1 LINE L1 -985 5161 4350 346 327 7 27 chr15 95837020 95837170 -5543351 - MIR SINE MIR 0 262 116 2138 198 50 2 chr15 95837465 95837909 -5542612 - MLT1C LTR MaLR 0 467 3 189 160 40 60 chr15 95838981 95839031 -5541490 - L2 LINE L2 -2 3311 3263 316 335 50 54 chr15 95839471 95839731 -5540790 - L2 LINE L2 -569 2745 2487 21 36 0 0 chr15 95840472 95840500 -5540021 + AT_rich Low_complexity Low_complexity 1 28 0 2622 30 0 0 chr15 95841392 95841694 -5538827 - AluYa5 SINE Alu -9 302 1 347 346 74 0 chr15 95844061 95844223 -5536298 - MIR SINE MIR -38 224 51 484 213 4 167 chr15 95844744 95844984 -5535537 - L2 LINE L2 -4 3309 3109 183 320 78 46 chr15 95845162 95845388 -5535133 - L2 LINE L2 -389 2925 2685 1729 157 14 35 chr15 95845388 95845826 -5534695 + AluSx SINE Alu 1 432 0 183 320 78 46 chr15 95845826 95845878 -5534643 - L2 LINE L2 -629 2685 2636 235 25 50 25 chr15 95845879 95845919 -5534602 + (GAAA)n Simple_repeat Simple_repeat 4 44 0 351 0 0 0 chr15 95846285 95846324 -5534197 + (TG)n Simple_repeat Simple_repeat 1 39 0 269 169 0 15 chr15 95846342 95846407 -5534114 + (CATA)n Simple_repeat Simple_repeat 1 64 0 1274 300 31 8 chr15 95846487 95846877 -5533644 - LTR16A LTR ERVL 0 450 52 447 352 73 28 chr15 95847462 95847888 -5532633 - ERVL LTR ERVL -853 4911 4467 901 217 5 0 chr15 95847963 95848147 -5532374 - MLT1B LTR MaLR 0 390 206 6485 90 3 5 chr15 95848217 95849337 -5531184 - L1PA10 LINE L1 -11 6157 5032 7020 163 14 3 chr15 95849337 95850575 -5529946 - L1P LINE L1 -3407 2739 1488 528 224 77 7 chr15 95850576 95850719 -5529802 - MLT1B LTR MaLR -216 174 22 308 340 0 28 chr15 95850725 95850831 -5529690 - MLT1B-int LTR MaLR -322 1413 1311 252 259 0 0 chr15 95851093 95851147 -5529374 - MLT1B-int LTR MaLR -499 872 819 1721 211 122 5 chr15 95851156 95851645 -5528876 - MLT1B-int LTR MaLR -707 664 1 236 158 0 0 chr15 95851645 95851683 -5528838 - MLT2B1 LTR ERVL 0 520 483 186 43 0 0 chr15 95851694 95851717 -5528804 + (TAGA)n Simple_repeat Simple_repeat 3 25 0 486 88 0 0 chr15 95851869 95851937 -5528584 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 1039 287 94 33 chr15 95851937 95852362 -5528159 - MLT2B1 LTR ERVL -66 454 4 581 348 41 5 chr15 95852362 95852583 -5527938 - ERVL LTR ERVL -1391 4373 4145 1541 294 63 43 chr15 95852936 95853070 -5527451 - ERVL LTR ERVL -3416 1580 1450 2057 164 104 3 chr15 95853070 95853455 -5527066 - MSTB LTR MaLR -2 424 1 1541 294 63 43 chr15 95853455 95854035 -5526486 - ERVL LTR ERVL -3546 1450 852 409 227 32 97 chr15 95854335 95854520 -5526001 - FAM SINE Alu -2 173 1 1887 257 28 14 chr15 95854594 95855322 -5525199 - L1M4c LINE L1 -2875 3769 3032 617 233 12 12 chr15 95855350 95855513 -5525008 - L1M4c LINE L1 -3683 2961 2799 654 282 65 60 chr15 95855569 95856136 -5524385 - L1M4c LINE L1 -3953 2693 2164 21 36 0 0 chr15 95856218 95856246 -5524275 + AT_rich Low_complexity Low_complexity 1 28 0 1463 257 46 56 chr15 95856303 95856505 -5524016 - L1M4c LINE L1 -4551 2095 1893 2019 142 3 0 chr15 95856505 95856814 -5523707 - AluSx SINE Alu -2 310 1 1463 257 46 56 chr15 95856814 95857819 -5522702 - L1M4c LINE L1 -4753 1893 915 273 282 235 16 chr15 95860449 95860832 -5519689 - L1ME4a LINE L1 -65 6056 5590 183 80 0 0 chr15 95861505 95861530 -5518991 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr15 95861568 95861596 -5518925 + AT_rich Low_complexity Low_complexity 1 28 0 440 345 102 33 chr15 95861612 95862308 -5518213 - L1ME4a LINE L1 -1381 4765 4022 354 328 85 11 chr15 95862633 95862810 -5517711 + MIR SINE MIR 64 253 -9 29 28 0 0 chr15 95863051 95863087 -5517434 + AT_rich Low_complexity Low_complexity 1 36 0 248 362 43 11 chr15 95863729 95863823 -5516698 - L2 LINE L2 -48 3224 3128 1833 194 51 55 chr15 95863852 95864342 -5516179 - MLT1D LTR MaLR 0 505 18 24 32 0 0 chr15 95865350 95865381 -5515140 + AT_rich Low_complexity Low_complexity 1 31 0 1816 133 0 0 chr15 95865424 95865673 -5514848 + AluSg SINE Alu 37 285 -25 330 26 0 0 chr15 95867043 95867082 -5513439 + (TG)n Simple_repeat Simple_repeat 1 39 0 657 270 55 66 chr15 95868463 95868587 -5511934 + L2 LINE L2 2143 2267 -1047 387 60 0 0 chr15 95868587 95868637 -5511884 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 657 270 55 66 chr15 95868637 95868893 -5511628 + L2 LINE L2 2267 2519 -795 325 260 91 39 chr15 95869234 95869414 -5511107 - MER5A DNA MER1_type -1 177 1 391 302 52 32 chr15 95871057 95871250 -5509271 - MIR SINE MIR -15 247 53 23 0 0 0 chr15 95871521 95871544 -5508977 + AT_rich Low_complexity Low_complexity 1 23 0 180 135 0 0 chr15 95871945 95871982 -5508539 + (TA)n Simple_repeat Simple_repeat 2 38 0 44 70 0 0 chr15 95871982 95872068 -5508453 + AT_rich Low_complexity Low_complexity 1 86 0 213 291 256 0 chr15 95872178 95872264 -5508257 + MIR SINE MIR 34 141 -121 359 281 0 0 chr15 95872390 95872472 -5508049 + L2 LINE L2 3187 3268 -4 517 241 105 12 chr15 95873528 95873690 -5506831 + MER5B DNA MER1_type 1 177 -1 24 32 0 0 chr15 95873932 95873963 -5506558 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr15 95874031 95874055 -5506466 + AT_rich Low_complexity Low_complexity 1 24 0 491 17 0 0 chr15 95874455 95874515 -5506006 - L1P2 LINE L1 -680 5474 5415 357 0 0 0 chr15 95874515 95874558 -5505963 + L1PA3 LINE L1 6109 6152 -3 38 0 0 0 chr15 95874558 95874596 -5505925 + AT_rich Low_complexity Low_complexity 1 38 0 207 286 167 12 chr15 95875356 95875440 -5505081 + MIR3 SINE MIR 14 110 -98 6687 68 19 0 chr15 95875475 95876533 -5503988 - L1PA6 LINE L1 0 6154 5077 2804 87 0 0 chr15 95876551 95876943 -5503578 + L1P LINE L1 4604 4995 -1151 269 365 19 19 chr15 95877383 95877594 -5502927 - L1ME LINE L1 -425 5696 5486 21 36 0 0 chr15 95878767 95878795 -5501726 + AT_rich Low_complexity Low_complexity 1 28 0 384 338 27 58 chr15 95878824 95879235 -5501286 + L1MEd LINE L1 851 1248 -4871 407 232 49 71 chr15 95879349 95879573 -5500948 + HAL1 LINE L1 1429 1647 -860 261 281 124 51 chr15 95880256 95880473 -5500048 + L2 LINE L2 1744 1976 -1338 538 290 69 20 chr15 95880484 95880729 -5499792 + L2 LINE L2 2234 2490 -824 1534 141 0 30 chr15 95880792 95881061 -5499460 + AluJb SINE Alu 50 310 -2 647 270 124 45 chr15 95881084 95881485 -5499036 + L2 LINE L2 2701 3139 -174 189 339 82 49 chr15 95882352 95882535 -5497986 + L2 LINE L2 3076 3264 -8 219 114 0 0 chr15 95883052 95883087 -5497434 + (TG)n Simple_repeat Simple_repeat 2 36 0 270 50 0 0 chr15 95883122 95883162 -5497359 - L1PA8 LINE L1 -2 6170 6131 6799 107 13 7 chr15 95883262 95884510 -5496011 - L1PA8A LINE L1 -586 5860 4611 2104 202 74 4 chr15 95884550 95885051 -5495470 - L1ME1 LINE L1 -249 5917 5382 310 194 21 54 chr15 95885064 95885157 -5495364 - L1MC4 LINE L1 -1339 6703 6614 1919 107 7 4 chr15 95885187 95885458 -5495063 - AluSx SINE Alu -40 272 1 701 209 40 95 chr15 95885458 95885807 -5494714 - L1ME1 LINE L1 -775 5371 5042 19268 155 10 23 chr15 95886122 95887843 -5492678 - L1PA8A LINE L1 -1824 4637 2896 2726 29 0 3 chr15 95887843 95888154 -5492367 - AluYa5 SINE Alu -1 310 1 19268 155 10 23 chr15 95888154 95891065 -5489456 - L1PA8A LINE L1 -3565 2896 4 244 105 0 0 chr15 95891185 95891223 -5489298 + L1P3 LINE L1 1555 1592 -4869 1329 142 23 0 chr15 95891252 95891470 -5489051 + L1PA11 LINE L1 5952 6174 0 227 329 38 44 chr15 95891488 95891646 -5488875 + MIR SINE MIR 102 258 -4 375 298 12 12 chr15 95891705 95891866 -5488655 - L1ME4a LINE L1 -269 5852 5692 182 315 27 0 chr15 95892040 95892113 -5488408 - L2 LINE L2 -205 3067 2993 2022 179 71 48 chr15 95892206 95892919 -5487602 + L1M3 LINE L1 4818 5521 -647 762 295 128 6 chr15 95892917 95893276 -5487245 + L1MC/D LINE L1 5389 5791 -2017 * 239 314 6 35 chr15 95893313 95893482 -5487039 + L1MC5 LINE L1 7613 7776 -185 29 70 0 0 chr15 95893619 95893676 -5486845 + AT_rich Low_complexity Low_complexity 1 57 0 394 312 37 18 chr15 95893801 95893910 -5486611 - L3 LINE CR1 -75 1502 1392 248 319 264 6 chr15 95894464 95894646 -5485875 - MIR SINE MIR -8 254 26 308 376 132 18 chr15 95894672 95895284 -5485237 - L3 LINE CR1 -483 1094 413 203 340 32 11 chr15 95896106 95896200 -5484321 - L2 LINE L2 -2 3270 3175 325 310 85 0 chr15 95896378 95896507 -5484014 + MIR SINE MIR 1 140 -122 270 295 50 29 chr15 95896577 95896716 -5483805 - MIR SINE MIR -19 243 102 1158 190 47 117 chr15 95897323 95897714 -5482807 + MLT2C1 LTR ERVL 1 361 -36 360 0 0 0 chr15 95897714 95897754 -5482767 + (CA)n Simple_repeat Simple_repeat 1 40 0 1158 190 47 117 chr15 95897754 95897789 -5482732 + MLT2C1 LTR ERVL 361 397 0 1833 65 4 24 chr15 95898327 95898606 -5481915 + L1PA8 LINE L1 5907 6180 0 21 57 0 0 chr15 95898885 95898920 -5481601 + AT_rich Low_complexity Low_complexity 1 35 0 417 240 66 0 chr15 95899997 95900118 -5480403 - MER94 DNA DNA -3 131 3 358 280 93 79 chr15 95900268 95900646 -5479875 + L1M4 LINE L1 2740 3122 -3024 249 33 0 0 chr15 95901568 95901598 -5478923 + (TA)n Simple_repeat Simple_repeat 2 31 0 2449 71 0 0 chr15 95901598 95901895 -5478626 - AluSp SINE Alu -16 297 1 30 0 0 0 chr15 95901981 95902011 -5478510 + AT_rich Low_complexity Low_complexity 1 30 0 325 299 45 30 chr15 95905021 95905155 -5475366 + MER91C DNA MER1_type 3 138 -2 216 341 135 0 chr15 95906014 95906140 -5474381 - MIR SINE MIR -82 180 38 305 290 148 23 chr15 95907004 95907221 -5473300 + MIR SINE MIR 18 261 -1 24 0 0 0 chr15 95908336 95908360 -5472161 + AT_rich Low_complexity Low_complexity 1 24 0 306 366 5 89 chr15 95909105 95909307 -5471214 - MIR3 SINE MIR -23 185 1 183 184 0 0 chr15 95909525 95909563 -5470958 + (TATG)n Simple_repeat Simple_repeat 4 41 0 241 257 59 73 chr15 95909686 95909958 -5470563 - L1MEd LINE L1 -4912 1207 940 27 87 0 0 chr15 95910049 95910118 -5470403 + AT_rich Low_complexity Low_complexity 1 69 0 345 82 0 0 chr15 95910381 95910430 -5470091 + (CA)n Simple_repeat Simple_repeat 2 50 0 1983 135 0 0 chr15 95910521 95910831 -5469690 + AluSg SINE Alu 1 310 0 187 329 26 0 chr15 95910966 95911042 -5469479 + L2 LINE L2 3193 3270 -2 259 261 34 11 chr15 95911060 95911148 -5469373 + MIR SINE MIR 161 250 -12 27 49 0 0 chr15 95911160 95911201 -5469320 + AT_rich Low_complexity Low_complexity 1 41 0 329 0 24 0 chr15 95911440 95911481 -5469040 + (TC)n Simple_repeat Simple_repeat 1 42 0 273 29 0 0 chr15 95911480 95911514 -5469007 + (CA)n Simple_repeat Simple_repeat 1 34 0 * 510 249 118 29 chr15 95911526 95911771 -5468750 + L1MC5 LINE L1 7250 7516 -445 703 189 73 0 chr15 95911774 95911938 -5468583 - L1MB1 LINE L1 -156 6012 5837 608 178 0 0 chr15 95911940 95912058 -5468463 + L1MB1 LINE L1 6038 6155 -13 1925 140 19 10 chr15 95912085 95912392 -5468129 - AluSx SINE Alu -1 311 2 294 237 22 44 chr15 95912461 95912596 -5467925 + L1MC5 LINE L1 7599 7730 -231 20425 162 29 41 chr15 95912603 95916329 -5464192 + L1M1 LINE L1 13 3781 -3784 192 77 0 0 chr15 95916329 95916355 -5464166 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 20425 162 29 41 chr15 95916355 95917446 -5463075 + L1M1 LINE L1 3781 4883 -2682 2397 68 0 0 chr15 95917446 95917739 -5462782 + AluY SINE Alu 1 293 -18 20425 162 29 41 chr15 95917739 95919688 -5460833 + L1M1 LINE L1 4883 6689 -876 760 147 47 0 chr15 95919707 95919877 -5460644 + CT-rich Low_complexity Low_complexity 3 180 0 207 204 0 0 chr15 95919891 95919935 -5460586 + C-rich Low_complexity Low_complexity 3 46 0 1570 187 0 14 chr15 95919937 95920226 -5460295 - AluJo SINE Alu -17 295 11 23 68 0 0 chr15 95920316 95920360 -5460161 + AT_rich Low_complexity Low_complexity 1 44 0 1899 118 4 4 chr15 95920525 95920795 -5459726 + AluSg SINE Alu 1 270 -40 248 0 31 0 chr15 95920795 95920827 -5459694 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 356 198 33 22 chr15 95920884 95920975 -5459546 - MLT1I LTR MaLR 0 409 318 768 200 0 0 chr15 95921056 95921186 -5459335 + FLAM_A SINE Alu 1 130 -3 191 375 0 0 chr15 95921883 95921947 -5458574 - L2 LINE L2 -1 3271 3208 2005 135 0 10 chr15 95922159 95922455 -5458066 + AluSx SINE Alu 1 293 -19 1978 120 23 16 chr15 95923881 95924190 -5456331 - AluY SINE Alu 0 311 1 211 323 0 0 chr15 95924340 95924405 -5456116 - L2 LINE L2 0 3313 3249 199 247 14 110 chr15 95925447 95925520 -5455001 - L3 LINE CR1 -17 1560 1495 280 262 0 65 chr15 95926052 95926159 -5454362 + MIR SINE MIR 131 230 -32 31 76 0 0 chr15 95926502 95926568 -5453953 + AT_rich Low_complexity Low_complexity 1 66 0 201 250 66 0 chr15 95926684 95926760 -5453761 + (TTATA)n Simple_repeat Simple_repeat 4 84 0 239 261 75 60 chr15 95928742 95928876 -5451645 + Charlie8 DNA MER1_type 104 239 -2178 395 293 110 6 chr15 95929044 95929208 -5451313 + MIR SINE MIR 76 256 -6 652 236 61 7 chr15 95929404 95929552 -5450969 - MER5A DNA MER1_type 0 189 34 25 0 0 0 chr15 95930495 95930520 -5450001 + AT_rich Low_complexity Low_complexity 1 25 0 1389 174 176 20 chr15 95930696 95931105 -5449416 + LTR54B LTR ERV1 19 491 -7 342 0 0 0 chr15 95931138 95931176 -5449345 + (TTA)n Simple_repeat Simple_repeat 2 39 0 386 315 72 6 chr15 95931602 95931783 -5448738 - MLT1J LTR MaLR -312 199 7 502 328 86 20 chr15 95932568 95932812 -5447709 + MIR SINE MIR 3 262 0 180 289 178 22 chr15 95932907 95932997 -5447524 - L3 LINE CR1 -14 1563 1460 298 389 93 27 chr15 95933084 95933227 -5447294 - L3 LINE CR1 -251 1326 1194 6198 93 4 0 chr15 95933227 95933330 -5447191 - L1PA10 LINE L1 -1 6167 6066 2088 141 24 24 chr15 95933330 95933573 -5446948 - THE1C LTR MaLR 0 375 130 3450 199 20 81 chr15 95933573 95934604 -5445917 - LTR5 LTR ERVK 0 969 1 2088 141 24 24 chr15 95934604 95934735 -5445786 - THE1C LTR MaLR -244 131 1 6198 93 4 0 chr15 95934735 95935638 -5444883 - L1PA10 LINE L1 -102 6066 5162 298 389 93 27 chr15 95935638 95935826 -5444695 - L3 LINE CR1 -383 1194 973 522 233 6 44 chr15 95936227 95936386 -5444135 - L1MA10 LINE L1 -7 6327 6175 1937 129 48 58 chr15 95936390 95936769 -5443752 + THE1C LTR MaLR 1 375 0 386 274 0 32 chr15 95936784 95936908 -5443613 - L1ME LINE L1 -498 5737 5618 6249 249 60 38 chr15 95936913 95939494 -5441027 - L1ME LINE L1 -1188 5027 2389 882 172 66 10 chr15 95939518 95939716 -5440805 - L1MB7 LINE L1 -10 6174 5966 322 272 9 26 chr15 95939724 95939838 -5440683 - L1ME LINE L1 -5881 515 404 309 309 17 20 chr15 95941277 95941426 -5439095 - MIR3 SINE MIR -11 197 47 22 0 0 0 chr15 95941604 95941626 -5438895 + AT_rich Low_complexity Low_complexity 1 22 0 270 326 89 21 chr15 95942357 95942668 -5437853 - L1MC/D LINE L1 -881 5431 5328 1979 90 76 4 chr15 95943237 95943514 -5437007 + AluSg SINE Alu 5 301 -9 250 303 112 7 chr15 95943541 95943693 -5436828 + MIR SINE MIR 95 262 0 248 359 32 0 chr15 95943976 95944132 -5436389 - L1MC/D LINE L1 -1923 4223 4063 21 36 0 0 chr15 95944554 95944582 -5435939 + AT_rich Low_complexity Low_complexity 1 28 0 433 277 79 11 chr15 95944607 95944784 -5435737 - L1ME LINE L1 -457 5664 5476 238 138 39 85 chr15 95945261 95945391 -5435130 + (TA)n Simple_repeat Simple_repeat 2 125 0 385 130 72 3 chr15 95945406 95945752 -5434769 + (TA)n Simple_repeat Simple_repeat 1 369 0 43 20 0 0 chr15 95945738 95945788 -5434733 + AT_rich Low_complexity Low_complexity 1 50 0 * 341 148 0 0 chr15 95945799 95945853 -5434668 - L1MA3 LINE L1 -2155 3991 3938 4076 156 39 1 chr15 95945859 95946605 -5433916 + L1MA3 LINE L1 3982 4755 -1391 934 115 27 0 chr15 95946589 95946737 -5433784 + L1MA3 LINE L1 5799 5950 -355 * 2829 119 12 35 chr15 95946605 95947108 -5433413 + L1MA3 LINE L1 5799 6305 0 625 179 123 0 chr15 95947153 95947332 -5433189 + L1ME1 LINE L1 4146 4346 -1800 680 80 10 0 chr15 95947348 95947448 -5433073 - L1PA6 LINE L1 -1832 4314 4214 7983 70 0 3 chr15 95947450 95949288 -5431233 + L1PA6 LINE L1 4314 6152 -2 779 251 122 45 chr15 95949288 95949755 -5430766 + L1ME1 LINE L1 4363 4865 -1281 2090 255 115 11 chr15 95949811 95950918 -5429603 + L1ME1 LINE L1 4944 6160 -6 248 325 8 8 chr15 95951116 95951242 -5429279 + L1MC2 LINE L1 4881 5006 -1140 800 255 22 25 chr15 95951453 95951731 -5428790 + L1MC2 LINE L1 5261 5537 -2271 3418 183 37 28 chr15 95951755 95952536 -5427985 + L1MC2 LINE L1 5541 6328 -16 431 263 131 23 chr15 95953454 95953629 -5426892 + MIR SINE MIR 58 251 -11 548 228 0 0 chr15 95953738 95953852 -5426669 + Tigger7 DNA MER2_type 4 117 -616 * 1430 128 24 54 chr15 95953850 95954146 -5426375 + Tigger7 DNA MER2_type 2238 2524 -63 206 296 0 0 chr15 95954585 95954639 -5425882 + GA-rich Low_complexity Low_complexity 3 56 0 349 262 202 39 chr15 95954724 95954854 -5425667 - MIR SINE MIR -62 146 3 722 166 0 58 chr15 95955422 95955561 -5424960 + FLAM_C SINE Alu 1 131 -2 2071 140 0 13 chr15 95955570 95955706 -5424815 + AluSx SINE Alu 1 137 -175 2105 126 3 0 chr15 95955706 95956000 -5424521 + AluSp SINE Alu 1 295 -18 2071 140 0 13 chr15 95956000 95956170 -5424351 + AluSx SINE Alu 137 303 -9 278 263 0 38 chr15 95957761 95957841 -5422680 + GA-rich Low_complexity Low_complexity 4 80 0 28 61 0 0 chr15 95957931 95957980 -5422541 + AT_rich Low_complexity Low_complexity 1 49 0 309 316 99 47 chr15 95958468 95958680 -5421841 + MIR SINE MIR 6 228 -34 289 211 0 0 chr15 95960282 95960334 -5420187 - MSTB LTR MaLR -64 362 311 2059 180 72 8 chr15 95961166 95961566 -5418955 - MSTB LTR MaLR 0 426 1 391 328 142 50 chr15 95961595 95962059 -5418462 - L2 LINE L2 -558 2756 2250 23 33 0 0 chr15 95962630 95962660 -5417861 + AT_rich Low_complexity Low_complexity 1 30 0 274 256 8 8 chr15 95962721 95962838 -5417683 + (TA)n Simple_repeat Simple_repeat 2 118 0 312 234 11 32 chr15 95964158 95964252 -5416269 - MER69 DNA AcHobo -1 2525 2434 493 146 62 42 chr15 95965168 95965276 -5415245 - MER53 DNA DNA -42 147 34 1641 205 87 6 chr15 95965276 95965642 -5414879 + MSTD LTR MaLR 1 396 0 493 146 62 42 chr15 95965642 95965677 -5414844 - MER53 DNA DNA -155 34 1 439 264 100 34 chr15 95965791 95966030 -5414491 + L1ME2 LINE L1 4841 5095 -1051 1960 171 3 3 chr15 95966087 95966396 -5414125 + AluJb SINE Alu 1 309 -3 964 283 43 36 chr15 95966474 95966894 -5413627 - LTR16A1 LTR ERVL -33 424 2 408 272 0 7 chr15 95966895 95967031 -5413490 + L1ME2 LINE L1 5139 5273 -873 1564 238 61 58 chr15 95967101 95967130 -5413391 + L1ME2 LINE L1 5461 5488 -676 1837 141 57 34 chr15 95967130 95967484 -5413037 - THE1B LTR MaLR -2 362 1 1564 238 61 58 chr15 95967484 95967528 -5412993 + L1ME2 LINE L1 5488 5530 -634 5438 85 67 28 chr15 95967528 95968319 -5412202 + LTR12 LTR ERV1 5 826 0 1564 238 61 58 chr15 95968319 95968937 -5411584 + L1ME2 LINE L1 5530 6155 -9 388 136 15 0 chr15 95969896 95969962 -5410559 + MLT2B3 LTR ERVL 1 67 -487 774 235 24 0 chr15 95970062 95970232 -5410289 + MLT2B3 LTR ERVL 75 248 -306 322 177 32 0 chr15 95970236 95970298 -5410223 + MER58 DNA MER1_type 2357 2420 0 22 0 0 0 chr15 95971223 95971245 -5409276 + AT_rich Low_complexity Low_complexity 1 22 0 480 334 103 20 chr15 95971534 95972180 -5408341 - L1MCc LINE L1 -816 6749 5906 600 281 68 54 chr15 95972220 95972357 -5408164 - L1MCc LINE L1 -1806 5759 5625 1643 201 7 10 chr15 95972357 95972646 -5407875 + AluJo SINE Alu 1 288 -24 600 281 68 54 chr15 95972646 95973085 -5407436 - L1MCc LINE L1 -1940 5625 5175 308 258 46 126 chr15 95973183 95973485 -5407036 - L1MCc LINE L1 -3000 4565 4288 262 240 0 0 chr15 95973568 95973618 -5406903 + MLT1F1 LTR MaLR 44 93 -500 538 207 0 0 chr15 95973650 95973771 -5406750 - L1MA6 LINE L1 0 6300 6180 1456 203 28 7 chr15 95973791 95973956 -5406565 - AluJb SINE Alu -15 297 122 351 0 0 0 chr15 95973956 95973995 -5406526 + (TG)n Simple_repeat Simple_repeat 2 40 0 1456 203 28 7 chr15 95973995 95974120 -5406401 - AluJb SINE Alu -190 122 1 1010 246 79 50 chr15 95974125 95974580 -5405941 + MLT1F1 LTR MaLR 100 567 0 1641 152 8 25 chr15 95974598 95975058 -5405463 - L1MCc LINE L1 -4418 3147 2609 2258 112 0 0 chr15 95975069 95975363 -5405158 + AluSg SINE Alu 1 294 -16 4322 207 22 5 chr15 95975372 95976107 -5404414 - L1MA1 LINE L1 0 6302 5556 21 0 0 0 chr15 95976144 95976165 -5404356 + AT_rich Low_complexity Low_complexity 1 21 0 2228 124 6 3 chr15 95976165 95976511 -5404010 - L1MA1 LINE L1 -4 6298 5952 11539 190 17 12 chr15 95976511 95978787 -5401734 - L1M4 LINE L1 -5262 2303 17 3541 126 56 18 chr15 95978787 95979527 -5400994 - L1MCc LINE L1 -4892 2155 1879 3260 167 119 37 chr15 95979521 95980301 -5400220 - L1MCc LINE L1 -5542 2023 1180 * 2301 82 24 0 chr15 95980408 95980701 -5399820 + AluSc SINE Alu 1 300 -9 2533 174 2 15 chr15 95980733 95981193 -5399328 - MER41D LTR ERV1 -103 454 1 3207 220 43 20 chr15 95981218 95981926 -5398595 + Charlie1 DNA MER1_type 1718 2460 -301 1884 146 4 0 chr15 95981926 95982227 -5398294 - AluSx SINE Alu 0 302 1 3207 220 43 20 chr15 95982227 95982536 -5397985 + Charlie1 DNA MER1_type 2460 2760 -1 331 261 0 11 chr15 95982536 95982628 -5397893 - MER103 DNA DNA -68 98 8 587 218 70 21 chr15 95982880 95983022 -5397499 + MER77 LTR ERV1 41 189 -416 942 284 63 36 chr15 95983082 95983494 -5397027 + MER77 LTR ERV1 177 599 -6 200 189 0 0 chr15 95983604 95983641 -5396880 + A-rich Low_complexity Low_complexity 5 41 0 21 0 0 0 chr15 95984110 95984131 -5396390 + AT_rich Low_complexity Low_complexity 1 21 0 190 227 23 23 chr15 95984702 95984746 -5395775 - L2 LINE L2 -10 3262 3219 21 0 0 0 chr15 95985862 95985883 -5394638 + AT_rich Low_complexity Low_complexity 1 21 0 741 211 0 0 chr15 95986834 95986967 -5393554 - FLAM_C SINE Alu 0 133 1 2224 92 3 0 chr15 95987026 95987339 -5393182 + AluSx SINE Alu 1 314 0 2170 111 0 40 chr15 95987849 95988174 -5392347 + AluSq SINE Alu 1 312 -1 1030 108 19 108 chr15 95988224 95988437 -5392084 - MER51A LTR ERV1 -440 194 1 353 303 30 0 chr15 95988610 95988763 -5391758 - LTR50 LTR ERVL -198 597 354 581 175 228 14 chr15 95988794 95989005 -5391516 - LTR50 LTR ERVL -537 258 3 303 71 0 0 chr15 95990188 95990230 -5390291 + (CA)n Simple_repeat Simple_repeat 1 42 0 1650 169 0 4 chr15 95990296 95990584 -5389937 - AluJb SINE Alu 0 310 24 429 198 0 0 chr15 95991459 95991540 -5388981 + Zaphod DNA AcHobo 3951 4031 0 297 128 0 0 chr15 95991811 95991858 -5388663 + (ATG)n Simple_repeat Simple_repeat 2 48 0 647 295 77 13 chr15 95991868 95992102 -5388419 - MIR SINE MIR -8 254 6 288 245 163 61 chr15 95992652 95992848 -5387673 + MIR SINE MIR 28 243 -19 1063 260 89 81 chr15 95992857 95993123 -5387398 + L2 LINE L2 2442 2704 -609 2403 145 12 2 chr15 95993123 95993522 -5386999 - MER57A LTR ERV1 0 403 1 1063 260 89 81 chr15 95993522 95994032 -5386489 + L2 LINE L2 2704 3219 -94 1963 237 100 8 chr15 95994032 95994622 -5385899 + LTR48B LTR ERV1 1 644 0 1063 260 89 81 chr15 95994622 95994718 -5385803 + L2 LINE L2 3219 3313 0 227 31 31 0 chr15 95994934 95994966 -5385555 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 2095 146 28 8 chr15 95994989 95995346 -5385175 - THE1B LTR MaLR 0 364 1 684 146 36 36 chr15 95995853 95995990 -5384531 + LTR29 LTR ERV1 39 175 -447 21 36 0 0 chr15 95997770 95997798 -5382723 + AT_rich Low_complexity Low_complexity 1 28 0 497 291 33 26 chr15 95999986 96000137 -5380384 + MER5B DNA MER1_type 2 153 -25 465 260 72 64 chr15 96000259 96000494 -5380027 - MIR SINE MIR 0 262 26 2043 110 7 14 chr15 96000494 96000804 -5379717 - AluSx SINE Alu 0 311 4 1310 242 76 44 chr15 96000819 96001319 -5379202 - L1MD2 LINE L1 -13 6346 5831 1960 179 59 34 chr15 96001323 96001764 -5378757 - LTR47A LTR ERVL 0 452 1 1280 182 142 37 chr15 96001784 96002136 -5378385 + MSTD LTR MaLR 8 396 0 2603 171 71 2 chr15 96002141 96002770 -5377751 - L1MD2 LINE L1 -534 5825 5132 243 337 45 34 chr15 96002882 96003060 -5377461 + MIR SINE MIR 83 262 0 283 333 109 6 chr15 96003148 96003313 -5377208 - MIR SINE MIR -50 212 31 24 0 0 0 chr15 96003552 96003576 -5376945 + AT_rich Low_complexity Low_complexity 1 24 0 389 328 50 44 chr15 96004555 96004735 -5375786 + MER5A DNA MER1_type 8 188 -1 209 230 10 0 chr15 96004865 96004965 -5375556 + (TA)n Simple_repeat Simple_repeat 2 102 0 314 348 92 5 chr15 96005907 96006091 -5374430 + MIR SINE MIR 31 230 -32 431 333 132 12 chr15 96006125 96006452 -5374069 + L3 LINE CR1 1212 1577 0 24 0 0 0 chr15 96006606 96006630 -5373891 + AT_rich Low_complexity Low_complexity 1 24 0 1149 201 25 50 chr15 96007824 96008107 -5372414 + L1MD2 LINE L1 6064 6339 -20 290 293 118 84 chr15 96010406 96010846 -5369675 - L2 LINE L2 -1 3271 2817 2063 102 3 7 chr15 96010866 96011149 -5369372 + AluSc SINE Alu 26 307 -2 491 263 80 0 chr15 96011838 96011975 -5368546 + MIR SINE MIR 81 228 -34 814 274 5 5 chr15 96014066 96014270 -5366251 - MIR SINE MIR -57 205 2 197 323 15 15 chr15 96014293 96014358 -5366163 + L2 LINE L2 3203 3267 -5 439 337 136 17 chr15 96014607 96015209 -5365312 - L2 LINE L2 0 3313 2638 1860 179 21 13 chr15 96015229 96015682 -5364839 + MLT2B2 LTR ERVL 3 520 0 183 385 34 17 chr15 96015691 96015930 -5364591 - L2 LINE L2 -710 2604 2362 215 363 33 0 chr15 96016237 96016328 -5364193 + MIR SINE MIR 59 152 -110 180 77 0 0 chr15 96017240 96017266 -5363255 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 237 373 8 16 chr15 96017482 96017608 -5362913 - MIR SINE MIR -64 144 20 1515 271 132 41 chr15 96017795 96018928 -5361593 - HAL1 LINE L1 -66 2441 1206 286 250 0 0 chr15 96018992 96019076 -5361445 - L1ME2 LINE L1 -1 6163 6080 1290 178 130 3 chr15 96019078 96019371 -5361150 + MER44D DNA MER2_type 4 603 -6 566 193 155 25 chr15 96019403 96019564 -5360957 - L1ME2 LINE L1 -86 6078 5897 234 327 19 6 chr15 96019578 96019740 -5360781 - HAL1 LINE L1 -1384 1123 960 272 130 0 0 chr15 96020064 96020110 -5360411 - MLT2F LTR ERVL -2 661 616 285 186 8 0 chr15 96020168 96020234 -5360287 - MLT2C2 LTR ERVL -41 479 364 488 269 6 51 chr15 96020405 96020580 -5359941 - MLT1E3 LTR MaLR -404 220 54 2283 107 47 16 chr15 96020975 96021339 -5359182 + THE1C LTR MaLR 1 375 0 246 303 23 23 chr15 96021925 96022057 -5358464 + MLT1H LTR MaLR 47 178 -371 296 167 33 0 chr15 96022260 96022320 -5358201 + MLT1F1 LTR MaLR 490 551 -16 22 35 0 0 chr15 96022567 96022596 -5357925 + AT_rich Low_complexity Low_complexity 1 29 0 48 0 0 0 chr15 96022734 96022782 -5357739 + AT_rich Low_complexity Low_complexity 1 48 0 1477 214 8 8 chr15 96022788 96023054 -5357467 - AluJo SINE Alu -46 266 1 1596 198 57 67 chr15 96023183 96023780 -5356741 + Looper DNA T2_type 956 1546 -12 7461 142 22 25 chr15 96024052 96025356 -5355165 - HSMAR2 DNA Mariner -1 1301 1 238 301 14 0 chr15 96025505 96025578 -5354943 - MLT1L LTR MaLR -535 80 7 4857 273 45 47 chr15 96025675 96029252 -5351269 + L1MEc LINE L1 238 3758 -2457 2330 96 0 6 chr15 96029252 96029564 -5350957 + AluSg SINE Alu 1 310 0 4857 273 45 47 chr15 96029564 96030265 -5350256 + L1MEc LINE L1 3758 4459 -1756 27 0 0 0 chr15 96030537 96030564 -5349957 + AT_rich Low_complexity Low_complexity 1 27 0 305 270 0 0 chr15 96030661 96030735 -5349786 - MLT1L LTR MaLR -215 400 327 567 274 77 5 chr15 96030860 96031068 -5349453 - MLT1L LTR MaLR -63 552 330 2042 138 13 3 chr15 96032206 96032511 -5348010 + AluSx SINE Alu 1 308 -4 255 229 0 0 chr15 96033228 96033289 -5347232 + CT-rich Low_complexity Low_complexity 2 62 0 228 143 0 0 chr15 96037165 96037207 -5343314 + (TATG)n Simple_repeat Simple_repeat 2 43 0 190 333 30 107 chr15 96038306 96038474 -5342047 - MIR3 SINE MIR -24 184 30 474 331 48 0 chr15 96039185 96039351 -5341170 - MIR SINE MIR -86 176 3 2084 125 10 0 chr15 96040034 96040331 -5340190 - AluSx SINE Alu -12 300 1 183 222 0 0 chr15 96041359 96041395 -5339126 + L2 LINE L2 3026 3061 -252 186 277 77 15 chr15 96041476 96041541 -5338980 + L2 LINE L2 3240 3308 -5 1494 176 46 0 chr15 96041772 96042033 -5338488 + AluJb SINE Alu 11 283 -29 1295 79 0 0 chr15 96042133 96042298 -5338223 - AluSg SINE Alu -145 165 1 180 200 0 0 chr15 96042355 96042385 -5338136 + L2 LINE L2 3222 3251 -21 196 266 78 31 chr15 96043543 96043607 -5336914 - MIR SINE MIR -71 191 125 224 322 39 71 chr15 96045541 96045726 -5334795 + MIR SINE MIR 30 206 -56 21 36 0 0 chr15 96046590 96046618 -5333903 + AT_rich Low_complexity Low_complexity 1 28 0 214 259 19 0 chr15 96046808 96046862 -5333659 + (TG)n Simple_repeat Simple_repeat 2 56 0 192 125 0 0 chr15 96047299 96047331 -5333190 + (GA)n Simple_repeat Simple_repeat 1 32 0 354 273 41 16 chr15 96049357 96049478 -5331043 + L1MC/D LINE L1 5398 5521 -2287 211 178 44 0 chr15 96049588 96049633 -5330888 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 1755 142 0 51 chr15 96049714 96050037 -5330484 - AluSx SINE Alu 0 312 5 263 363 6 0 chr15 96050095 96050255 -5330266 - L1ME LINE L1 -334 5787 5627 381 305 14 14 chr15 96050348 96050489 -5330032 - L2 LINE L2 -252 3061 2921 813 94 0 0 chr15 96050533 96050650 -5329871 + LTR12 LTR ERV1 153 269 -445 321 234 11 0 chr15 96050660 96050754 -5329767 + LTR30 LTR ERV1 548 642 -80 2313 62 37 0 chr15 96050755 96051080 -5329441 + LTR12 LTR ERV1 377 713 -1 320 212 152 73 chr15 96051450 96051615 -5328906 - L1M4 LINE L1 -1194 4952 4775 22 35 0 0 chr15 96052252 96052281 -5328240 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr15 96055343 96055367 -5325154 + AT_rich Low_complexity Low_complexity 1 24 0 459 0 0 0 chr15 96057197 96057248 -5323273 + (CA)n Simple_repeat Simple_repeat 2 52 0 24 0 0 0 chr15 96057833 96057857 -5322664 + AT_rich Low_complexity Low_complexity 1 24 0 213 121 0 0 chr15 96059343 96059376 -5321145 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 396 0 0 0 chr15 96060702 96060746 -5319775 + (CA)n Simple_repeat Simple_repeat 2 45 0 216 318 37 28 chr15 96061102 96061209 -5319312 - L3 LINE CR1 -159 1418 1311 288 0 0 0 chr15 96061308 96061340 -5319181 + (CA)n Simple_repeat Simple_repeat 2 33 0 321 100 0 0 chr15 96061342 96061392 -5319129 + (TC)n Simple_repeat Simple_repeat 1 50 0 708 313 112 18 chr15 96061402 96061849 -5318672 - L3 LINE CR1 -354 1223 735 1046 195 0 0 chr15 96061907 96062081 -5318440 - AluJb SINE Alu -21 291 118 186 191 0 0 chr15 96063680 96063727 -5316794 + CT-rich Low_complexity Low_complexity 1 47 0 2530 50 0 7 chr15 96064692 96064995 -5315526 + AluY SINE Alu 1 301 -10 237 221 0 0 chr15 96065141 96065209 -5315312 + (CA)n Simple_repeat Simple_repeat 1 68 0 22 35 0 0 chr15 96065604 96065633 -5314888 + AT_rich Low_complexity Low_complexity 1 29 0 358 382 25 15 chr15 96065690 96065889 -5314632 + L1ME4a LINE L1 5520 5720 -401 344 323 58 49 chr15 96066022 96066245 -5314276 + L1ME4a LINE L1 5720 5944 -177 25 83 0 0 chr15 96066345 96066405 -5314116 + AT_rich Low_complexity Low_complexity 1 60 0 613 151 66 20 chr15 96067366 96067518 -5313003 + MER53 DNA DNA 9 167 -22 207 125 0 0 chr15 96067948 96067988 -5312533 + (TG)n Simple_repeat Simple_repeat 1 40 0 459 0 0 0 chr15 96067988 96068039 -5312482 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 844 201 25 13 chr15 96068137 96068296 -5312225 + AluJb SINE Alu 130 290 -22 220 278 93 19 chr15 96069059 96069167 -5311354 - MIR SINE MIR -61 201 86 27 62 0 0 chr15 96069839 96069887 -5310634 + AT_rich Low_complexity Low_complexity 1 48 0 180 253 0 0 chr15 96070607 96070682 -5309839 + (TAG)n Simple_repeat Simple_repeat 2 76 0 1560 204 25 40 chr15 96071309 96071705 -5308816 + MLT1B LTR MaLR 1 390 0 290 380 88 32 chr15 96071824 96072108 -5308413 + L2 LINE L2 2946 3245 -27 2257 86 0 3 chr15 96072583 96072911 -5307610 + AluY SINE Alu 1 311 0 1220 240 71 117 chr15 96073072 96073638 -5306883 + MLT1E LTR MaLR 51 590 -3 368 300 118 48 chr15 96074117 96074488 -5306033 - L2 LINE L2 -49 3264 2864 250 246 14 0 chr15 96074555 96074624 -5305897 + L1MC5 LINE L1 6693 6762 -1199 656 181 0 40 chr15 96074731 96074908 -5305613 + L1MC3 LINE L1 6928 7097 -688 258 297 11 0 chr15 96074910 96075001 -5305520 + MLT1F1 LTR MaLR 37 128 -439 1820 208 70 32 chr15 96075004 96075563 -5304958 + L1MC3 LINE L1 7205 7784 -1 2267 107 0 7 chr15 96075566 96075866 -5304655 + AluSg SINE Alu 1 298 -12 371 354 45 12 chr15 96075927 96076170 -5304351 - L2 LINE L2 -639 2675 2425 1680 282 81 25 chr15 96076187 96077280 -5303241 + L1MEc LINE L1 1287 2440 -3956 539 282 32 0 chr15 96077291 96077479 -5303042 + L1ME1 LINE L1 16 209 -6333 11360 169 25 9 chr15 96077479 96079535 -5300986 - L1M1 LINE L1 -5102 2463 375 3622 77 12 10 chr15 96079573 96080070 -5300451 + L1PA10 LINE L1 5666 6163 -5 22 35 0 0 chr15 96080071 96080100 -5300421 + AT_rich Low_complexity Low_complexity 1 29 0 2014 243 102 32 chr15 96080100 96081077 -5299444 + L1ME1 LINE L1 3270 4315 -2329 891 287 12 0 chr15 96081080 96081414 -5299107 - L1M4 LINE L1 -3414 2732 2395 1305 218 61 20 chr15 96081430 96081875 -5298646 + L1ME1 LINE L1 5088 5550 -1094 7147 216 192 6 chr15 96081876 96082879 -5297642 + L1PA15 LINE L1 2523 3339 -2807 2199 86 0 4 chr15 96082879 96083158 -5297363 + AluY SINE Alu 27 304 -7 7147 216 192 6 chr15 96083158 96084522 -5295999 + L1PA15 LINE L1 3339 5329 -817 3493 141 21 2 chr15 96084622 96085202 -5295319 + L1PA15 LINE L1 5572 6162 -3 1495 244 78 23 chr15 96085207 96086063 -5294458 + L1ME1 LINE L1 5541 6467 -197 22 0 0 0 chr15 96086077 96086099 -5294422 + AT_rich Low_complexity Low_complexity 1 22 0 632 226 0 12 chr15 96086165 96086329 -5294192 + L1MA10 LINE L1 6169 6330 -4 2333 93 0 0 chr15 96086342 96086631 -5293890 + AluSx SINE Alu 2 290 -22 21 0 0 0 chr15 96086631 96086652 -5293869 + AT_rich Low_complexity Low_complexity 1 21 0 205 152 0 0 chr15 96086673 96086706 -5293815 + (ACATG)n Simple_repeat Simple_repeat 5 37 0 2310 77 3 0 chr15 96086818 96087104 -5293417 + AluSp SINE Alu 1 287 -26 1839 176 14 3 chr15 96089840 96090186 -5290335 - MLT1A1 LTR MaLR -15 350 1 2076 141 0 0 chr15 96090694 96090991 -5289530 + AluSx SINE Alu 1 297 -15 26 0 0 0 chr15 96091217 96091243 -5289278 + AT_rich Low_complexity Low_complexity 1 26 0 1895 148 72 13 chr15 96092650 96092968 -5287553 - MER1B DNA MER1_type 0 337 1 304 283 169 12 chr15 96093102 96093268 -5287253 - MIR3 SINE MIR -15 193 2 350 261 0 63 chr15 96093516 96093627 -5286894 - MIR SINE MIR -11 251 148 855 199 230 50 chr15 96093963 96094107 -5286414 + MLT1A2 LTR MaLR 1 118 -256 198 0 0 0 chr15 96094107 96094129 -5286392 + (TC)n Simple_repeat Simple_repeat 2 23 0 855 199 230 50 chr15 96094129 96094301 -5286220 + MLT1A2 LTR MaLR 118 374 0 272 282 0 0 chr15 96094507 96094578 -5285943 + MIR SINE MIR 160 230 -32 272 216 20 0 chr15 96094695 96094746 -5285775 + MIR SINE MIR 92 143 -65 483 90 56 0 chr15 96095815 96095904 -5284617 + (TCTA)n Simple_repeat Simple_repeat 1 94 0 292 299 180 31 chr15 96096525 96096880 -5283641 + L2 LINE L2 2242 2649 -665 198 375 48 48 chr15 96097250 96097354 -5283167 + L2 LINE L2 3210 3313 0 338 228 89 57 chr15 96098187 96098310 -5282211 + MIR SINE MIR 17 143 -119 398 226 70 43 chr15 96099985 96100100 -5280421 - MIR SINE MIR -139 123 6 226 325 49 68 chr15 96102238 96102401 -5278120 - MIR SINE MIR -70 192 33 251 139 42 42 chr15 96102813 96102885 -5277636 + (TA)n Simple_repeat Simple_repeat 1 72 0 * 355 196 27 71 chr15 96102854 96103038 -5277483 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 23 33 0 0 chr15 96103182 96103212 -5277309 + AT_rich Low_complexity Low_complexity 1 30 0 192 333 26 13 chr15 96103364 96103442 -5277079 + MIR SINE MIR 48 126 -82 482 244 94 31 chr15 96103476 96103636 -5276885 - MIR SINE MIR -52 210 41 207 354 13 0 chr15 96103656 96103735 -5276786 + MIR SINE MIR 178 257 -5 429 295 124 5 chr15 96107621 96107814 -5272707 - MIR SINE MIR -6 256 41 22 35 0 0 chr15 96107830 96107859 -5272662 + AT_rich Low_complexity Low_complexity 1 29 0 290 336 123 23 chr15 96108034 96108254 -5272267 - MIR SINE MIR -7 255 14 438 20 0 0 chr15 96109058 96109109 -5271412 + (TC)n Simple_repeat Simple_repeat 1 51 0 210 71 0 0 chr15 96109249 96109277 -5271244 + (A)n Simple_repeat Simple_repeat 1 28 0 481 259 0 48 chr15 96109818 96109965 -5270556 + MLT1E LTR MaLR 16 155 -438 797 195 13 69 chr15 96110058 96110289 -5270232 - MLT1F1 LTR MaLR -346 221 4 305 313 18 0 chr15 96112856 96112968 -5267553 - L2 LINE L2 -2 3270 3157 212 239 43 144 chr15 96113232 96113420 -5267101 - L2 LINE L2 -27 3286 3118 314 206 55 14 chr15 96113455 96113528 -5266993 + MIR3 SINE MIR 104 179 -29 180 361 34 59 chr15 96113783 96113902 -5266619 - MIR SINE MIR -67 141 26 835 164 0 0 chr15 96114172 96114306 -5266215 + FLAM_C SINE Alu 10 143 0 1050 224 68 45 chr15 96115570 96115729 -5264792 + MLT1C LTR MaLR 34 188 -279 1629 175 4 0 chr15 96115729 96115997 -5264524 + AluJb SINE Alu 5 273 -39 1050 224 68 45 chr15 96115997 96116261 -5264260 + MLT1C LTR MaLR 188 467 0 226 243 95 40 chr15 96116367 96116515 -5264006 + MLT1F1 LTR MaLR 377 532 -35 1657 227 33 24 chr15 96116864 96117317 -5263204 - MLT1D LTR MaLR 0 505 49 270 220 0 0 chr15 96117371 96117421 -5263100 - MLT1D LTR MaLR -455 50 1 187 263 0 0 chr15 96117430 96117468 -5263053 - L2 LINE L2 -19 3253 3216 27 29 0 0 chr15 96117472 96117506 -5263015 + AT_rich Low_complexity Low_complexity 1 34 0 2954 185 26 0 chr15 96117878 96118452 -5262069 - L1MB1 LINE L1 -2 6166 5578 1202 87 43 5 chr15 96118472 96118657 -5261864 - MER30 DNA MER1_type -38 192 1 1478 193 21 16 chr15 96118659 96119146 -5261375 - L1MB1 LINE L1 -600 5583 5093 327 289 58 8 chr15 96119169 96119290 -5261231 - MIR SINE MIR -67 195 69 1316 259 92 25 chr15 96120124 96120654 -5259867 + MLT2F LTR ERVL 3 621 -42 237 65 0 0 chr15 96120654 96120685 -5259836 + (TG)n Simple_repeat Simple_repeat 2 32 0 1316 259 92 25 chr15 96120685 96120727 -5259794 + MLT2F LTR ERVL 621 659 -4 25 51 0 0 chr15 96120749 96120788 -5259733 + AT_rich Low_complexity Low_complexity 1 39 0 287 285 122 0 chr15 96120792 96120915 -5259606 - MIR SINE MIR 0 262 125 195 42 0 0 chr15 96122143 96122167 -5258354 + (TC)n Simple_repeat Simple_repeat 1 24 0 24 32 0 0 chr15 96122612 96122643 -5257878 + AT_rich Low_complexity Low_complexity 1 31 0 278 330 9 65 chr15 96124372 96124540 -5255981 - MER5A DNA MER1_type 0 189 18 243 375 104 14 chr15 96124635 96124779 -5255742 - MIR3 SINE MIR -14 194 38 1400 171 59 21 chr15 96124884 96125140 -5255381 + MER7A DNA MER2_type 51 319 -2719 2373 160 44 10 chr15 96125140 96125552 -5254969 - MSTB LTR MaLR 0 426 1 1400 171 59 21 chr15 96125552 96125581 -5254940 + MER7A DNA MER2_type 319 345 -1 5427 184 35 22 chr15 96126202 96128077 -5252444 - L1MC1 LINE L1 -5 6608 4701 1826 144 47 11 chr15 96128281 96128559 -5251962 + AluJb SINE Alu 6 293 -19 192 77 0 0 chr15 96128596 96128622 -5251899 + (TA)n Simple_repeat Simple_repeat 1 26 0 293 250 29 0 chr15 96128647 96128715 -5251806 + MIR SINE MIR 117 186 -76 828 291 6 69 chr15 96128937 96129298 -5251223 + MLT1J LTR MaLR 108 445 -66 396 288 34 8 chr15 96129881 96129999 -5250522 + MIR SINE MIR 11 131 -131 2468 111 37 5 chr15 96130444 96131002 -5249519 + L1P4 LINE L1 5105 5679 -484 2193 120 0 10 chr15 96131690 96131991 -5248530 + AluSx SINE Alu 1 298 -14 4354 238 47 61 chr15 96132617 96133834 -5246687 - L1MC1 LINE L1 -1998 4428 3195 3651 157 34 11 chr15 96133834 96134541 -5245980 + L1MA8 LINE L1 5552 6274 -17 764 11 0 0 chr15 96134541 96134631 -5245890 - AluY SINE Alu -15 296 207 4354 238 47 61 chr15 96134631 96135589 -5244932 - L1MC1 LINE L1 -3229 3197 2204 342 141 188 0 chr15 96135586 96135671 -5244850 + L1MCa LINE L1 1966 2066 -4360 * 1851 85 0 8 chr15 96135772 96136018 -5244503 + AluSc SINE Alu 53 296 -13 410 265 47 63 chr15 96136174 96136514 -5244007 - MLT1L LTR MaLR -217 398 18 240 177 97 0 chr15 96136752 96136814 -5243707 - L1MDa LINE L1 -3945 2595 2528 1471 162 14 91 chr15 96136831 96137044 -5243477 + MLT1A1 LTR MaLR 1 229 -136 1555 193 31 88 chr15 96137044 96137500 -5243021 + MSTB1 LTR MaLR 1 430 -2 1897 170 0 0 chr15 96137502 96137796 -5242725 + AluJb SINE Alu 3 296 -16 1471 162 14 91 chr15 96137796 96137964 -5242557 + MLT1A1 LTR MaLR 230 365 0 483 237 90 45 chr15 96137967 96138144 -5242377 - L1MDa LINE L1 -4020 2520 2336 369 192 0 0 chr15 96138272 96138350 -5242171 + L1MC3 LINE L1 7032 7109 -676 1890 182 13 8 chr15 96138400 96138784 -5241737 + L1MD3 LINE L1 7447 7832 -163 638 105 65 16 chr15 96138788 96138912 -5241609 - THE1B LTR MaLR -1 363 234 881 240 21 17 chr15 96139013 96139246 -5241275 - MLT1G LTR MaLR -356 234 1 215 220 20 20 chr15 96139246 96139296 -5241225 - MIR SINE MIR -107 155 106 256 212 81 61 chr15 96139457 96139556 -5240965 + L2 LINE L2 2419 2519 -795 432 0 0 0 chr15 96140813 96140861 -5239660 + (CA)n Simple_repeat Simple_repeat 2 49 0 282 350 89 54 chr15 96140863 96141269 -5239252 + L2 LINE L2 2842 3261 -11 252 235 35 0 chr15 96142618 96142716 -5237805 + MLT1J LTR MaLR 95 260 -339 698 199 172 5 chr15 96143544 96143730 -5236791 + MER20 DNA MER1_type 3 219 0 299 281 67 73 chr15 96146653 96146817 -5233704 - MLT1J LTR MaLR -314 197 35 275 273 111 64 chr15 96147227 96147743 -5232778 + L1ME LINE L1 4287 4826 -1320 1689 100 8 0 chr15 96147834 96148073 -5232448 + L1PA11 LINE L1 5933 6173 -1 361 298 68 76 chr15 96148085 96148298 -5232223 + L1ME LINE L1 5209 5427 -694 2203 117 0 13 chr15 96148298 96148614 -5231907 + AluSx SINE Alu 1 312 0 361 298 68 76 chr15 96148614 96148739 -5231782 + L1ME LINE L1 5427 5551 -570 2105 136 7 0 chr15 96148866 96149168 -5231353 - AluSx SINE Alu -3 309 6 200 180 20 40 chr15 96150487 96150537 -5229984 + CT-rich Low_complexity Low_complexity 5 53 0 683 215 25 0 chr15 96151425 96151583 -5228938 - L1MD3 LINE L1 0 7995 7834 1153 164 16 0 chr15 96151587 96151770 -5228751 + THE1B LTR MaLR 1 186 -178 341 323 24 49 chr15 96152030 96152194 -5228327 - MIR SINE MIR -55 207 48 187 326 74 47 chr15 96152834 96153024 -5227497 - L2 LINE L2 -430 2884 2690 412 275 148 31 chr15 96155105 96155788 -5224733 + L1ME2 LINE L1 2745 3507 -2639 421 339 79 8 chr15 96155839 96156093 -5224428 + L1ME2 LINE L1 3580 3851 -2295 25 0 0 0 chr15 96156143 96156168 -5224353 + AT_rich Low_complexity Low_complexity 1 25 0 301 312 26 19 chr15 96156204 96156358 -5224163 + L1ME2 LINE L1 4016 4170 -1976 542 272 110 21 chr15 96156415 96156606 -5223915 + MER58A DNA MER1_type 7 214 -10 336 274 0 20 chr15 96156636 96156738 -5223783 + L1ME2 LINE L1 4245 4344 -1802 268 331 6 6 chr15 96157031 96157188 -5223333 + L1ME2 LINE L1 4674 4830 -1316 810 193 39 0 chr15 96157987 96158168 -5222353 - MER53 DNA DNA 0 189 2 370 271 171 14 chr15 96158661 96158801 -5221720 + MER96 DNA MER1_type? 14 175 0 2159 196 75 9 chr15 96159037 96159475 -5221046 - MLT1C LTR MaLR 0 467 1 520 184 55 9 chr15 96160148 96160257 -5220264 + MIR SINE MIR 80 193 -69 1476 229 60 58 chr15 96161165 96161396 -5219125 + L1ME2 LINE L1 5582 5811 -353 2090 125 0 0 chr15 96161396 96161693 -5218828 + AluSx SINE Alu 1 297 -15 1476 229 60 58 chr15 96161693 96161995 -5218526 + L1ME2 LINE L1 5811 6116 -48 348 312 216 0 chr15 96162609 96162827 -5217694 - L2 LINE L2 -2 3311 3047 323 298 47 77 chr15 96164376 96164611 -5215910 + L1M4 LINE L1 1123 1350 -5499 197 119 24 0 chr15 96165161 96165203 -5215318 + CT-rich Low_complexity Low_complexity 3 45 0 299 243 13 33 chr15 96166427 96166529 -5213992 + MIR SINE MIR 37 139 -69 249 180 0 0 chr15 96168327 96168377 -5212144 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 1383 190 78 11 chr15 96168480 96168749 -5211772 + AluJo SINE Alu 1 287 -25 194 222 19 0 chr15 96169381 96169435 -5211086 + CT-rich Low_complexity Low_complexity 3 57 0 25 0 0 0 chr15 96170615 96170640 -5209881 + AT_rich Low_complexity Low_complexity 1 25 0 239 301 58 29 chr15 96170907 96171010 -5209511 - L2 LINE L2 -264 3008 2903 1731 169 0 25 chr15 96171110 96171394 -5209127 + AluJo SINE Alu 1 277 -35 361 337 49 16 chr15 96171404 96171588 -5208933 - L2 LINE L2 -614 2700 2511 233 246 64 73 chr15 96172402 96172512 -5208009 + L1ME LINE L1 5715 5823 -298 289 209 38 38 chr15 96172566 96172671 -5207850 + HAL1b LINE L1 697 801 -547 429 278 100 33 chr15 96172828 96173098 -5207423 + L1M4 LINE L1 3705 3992 -2856 2189 114 0 3 chr15 96173256 96173553 -5206968 - AluSx SINE Alu -16 296 1 959 267 13 22 chr15 96173659 96173891 -5206630 + MIR SINE MIR 29 258 -4 234 176 44 0 chr15 96174091 96174159 -5206362 + (TA)n Simple_repeat Simple_repeat 1 71 0 1126 87 31 0 chr15 96174307 96174507 -5206014 - AluY SINE Alu 0 322 118 520 270 41 85 chr15 96174625 96174943 -5205578 - L1MC4a LINE L1 -161 5960 5657 2149 102 11 0 chr15 96175053 96175338 -5205183 - AluSx SINE Alu -24 288 1 185 243 129 64 chr15 96175897 96176037 -5204484 + L2 LINE L2 3153 3301 -12 3159 210 57 47 chr15 96176094 96176761 -5203760 - L1ME1 LINE L1 -19 6147 5467 234 91 0 0 chr15 96176761 96176794 -5203727 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 3159 210 57 47 chr15 96176794 96177007 -5203514 - L1ME1 LINE L1 -699 5467 5258 2140 136 0 0 chr15 96179771 96180073 -5200448 + AluSx SINE Alu 1 302 -10 2171 199 25 0 chr15 96180964 96181366 -5199155 - L1MB5 LINE L1 -8 6166 5755 1865 246 121 19 chr15 96181811 96182693 -5197828 + Zaphod DNA AcHobo 1 989 -3042 340 247 95 6 chr15 96182711 96182869 -5197652 + Zaphod DNA AcHobo 3627 3798 -233 200 284 28 92 chr15 96182979 96183019 -5197502 + MIR SINE MIR 123 164 -98 2078 136 27 0 chr15 96183019 96183314 -5197207 + AluSx SINE Alu 1 303 -9 200 284 28 92 chr15 96183314 96183414 -5197107 + MIR SINE MIR 164 254 -8 2193 125 23 0 chr15 96184154 96184459 -5196062 + AluSq SINE Alu 1 312 -1 2819 99 3 3 chr15 96184610 96184965 -5195556 + THE1A LTR MaLR 1 355 0 11803 108 14 1 chr15 96184966 96186525 -5193996 + THE1A-int LTR MaLR 2 1580 0 2824 80 14 3 chr15 96186525 96186876 -5193645 + THE1A LTR MaLR 1 355 0 210 71 0 0 chr15 96186886 96186914 -5193607 + (TG)n Simple_repeat Simple_repeat 1 28 0 451 223 78 28 chr15 96187149 96187372 -5193149 - L1MB5 LINE L1 -747 5399 5221 221 326 149 28 chr15 96187831 96188012 -5192509 - MIR SINE MIR -57 205 3 255 341 22 0 chr15 96188690 96188781 -5191740 - MIR3 SINE MIR -30 178 86 201 74 0 0 chr15 96189282 96189309 -5191212 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 3650 123 24 86 chr15 96189895 96190648 -5189873 - L1MCa LINE L1 -4794 1632 927 418 126 31 255 chr15 96190649 96190890 -5189631 - Ricksha DNA DNA -1 3253 3088 2235 80 3 51 chr15 96190890 96191202 -5189319 + AluY SINE Alu 1 297 -14 418 126 31 255 chr15 96191202 96191254 -5189267 - Ricksha DNA DNA -166 3088 3026 556 192 39 19 chr15 96191269 96191425 -5189096 - Ricksha DNA DNA -164 3087 2929 4013 127 17 0 chr15 96191470 96192063 -5188458 - L1PA13 LINE L1 -1 6162 5560 5090 155 33 34 chr15 96192068 96193365 -5187156 + L1PA13 LINE L1 4278 5564 -604 2206 94 0 7 chr15 96193822 96194139 -5186382 + AluY SINE Alu 1 315 0 2752 106 14 3 chr15 96194336 96194696 -5185825 - THE1B LTR MaLR 0 364 1 200 219 0 0 chr15 96194901 96194942 -5185579 + L2 LINE L2 1366 1406 -1908 268 250 56 37 chr15 96195208 96195316 -5185205 + L2 LINE L2 1885 1994 -1320 968 225 118 21 chr15 96195371 96195745 -5184776 - L1MC5 LINE L1 -45 7916 7507 583 217 0 0 chr15 96195778 96195884 -5184637 + FLAM_A SINE Alu 4 109 -33 30 0 0 0 chr15 96195906 96195936 -5184585 + AT_rich Low_complexity Low_complexity 1 30 0 277 169 85 0 chr15 96195938 96195997 -5184524 - L1MC5 LINE L1 -496 7465 7402 213 215 62 0 chr15 96196934 96196999 -5183522 - MIR SINE MIR -95 167 99 396 286 41 94 chr15 96197769 96198014 -5182507 + MIR SINE MIR 28 259 -3 2202 124 0 0 chr15 96198067 96198366 -5182155 + AluSx SINE Alu 1 299 -13 268 315 118 28 chr15 96198430 96198608 -5181913 - MIR3 SINE MIR -11 197 4 310 337 20 0 chr15 96199125 96199223 -5181298 + L2 LINE L2 3203 3302 -11 510 312 136 21 chr15 96200167 96200574 -5179947 - L2 LINE L2 -6 3307 2851 1442 125 5 0 chr15 96200824 96201024 -5179497 + AluSx SINE Alu 1 201 -111 375 281 22 34 chr15 96202303 96202481 -5178040 + MARNA DNA Mariner 137 312 -274 547 295 135 5 chr15 96202660 96202867 -5177654 + LTR41 LTR ERVL 62 295 -478 291 299 47 8 chr15 96202872 96202999 -5177522 + L1ME3A LINE L1 5731 5862 -308 208 275 25 0 chr15 96203031 96203111 -5177410 + (TA)n Simple_repeat Simple_repeat 2 83 0 361 139 89 0 chr15 96203144 96203223 -5177298 - L1MD1 LINE L1 -1 6241 6156 8583 146 24 65 chr15 96203239 96204865 -5175656 - Tigger1 DNA MER2_type -856 1562 3 259 186 103 10 chr15 96204869 96204966 -5175555 - L1ME LINE L1 -3770 2310 2205 * 2228 277 38 79 chr15 96204943 96206103 -5174418 - L1ME LINE L1 -4984 1086 6 288 316 66 37 chr15 96206128 96206372 -5174149 + MER46C DNA MER2_type 80 330 -8 24 32 0 0 chr15 96206829 96206860 -5173661 + AT_rich Low_complexity Low_complexity 1 31 0 399 302 41 47 chr15 96206913 96207082 -5173439 - MIR SINE MIR -79 183 16 251 365 51 13 chr15 96207116 96207272 -5173249 - MIR SINE MIR -94 168 7 302 332 60 56 chr15 96209292 96209489 -5171032 + HAL1 LINE L1 848 1048 -1459 2360 89 3 0 chr15 96209489 96209792 -5170729 - AluY SINE Alu -7 304 1 302 332 60 56 chr15 96209792 96209826 -5170695 + HAL1 LINE L1 1048 1080 -1427 304 379 46 29 chr15 96209971 96210319 -5170202 + HAL1 LINE L1 1315 1668 -839 22 56 0 0 chr15 96210323 96210359 -5170162 + AT_rich Low_complexity Low_complexity 1 36 0 445 211 11 0 chr15 96210789 96210884 -5169637 + L1ME3A LINE L1 6062 6157 -13 2010 134 58 30 chr15 96211029 96211394 -5169127 - THE1C LTR MaLR 0 375 1 4288 144 6 10 chr15 96211394 96212069 -5168452 - THE1C-int LTR MaLR 0 1580 909 304 271 142 32 chr15 96212174 96212392 -5168129 - L1MC4 LINE L1 -1036 7006 6765 625 268 164 31 chr15 96212878 96213232 -5167289 - L2 LINE L2 -1 3312 2912 3105 96 89 0 chr15 96213962 96214421 -5166100 - THE1C-int LTR MaLR -1080 500 1 2090 105 30 95 chr15 96214421 96214657 -5165864 - THE1C LTR MaLR 0 375 174 2268 102 7 3 chr15 96214657 96214960 -5165561 + AluSx SINE Alu 1 304 -8 2090 105 30 95 chr15 96214960 96215124 -5165397 - THE1C LTR MaLR -201 174 1 340 254 30 37 chr15 96215375 96215509 -5165012 - LTR33A LTR ERVL -10 513 381 321 266 60 101 chr15 96215600 96215818 -5164703 - LTR33A LTR ERVL -297 224 16 363 214 145 25 chr15 96216417 96216576 -5163945 - LTR50 LTR ERVL -3 792 615 * 437 263 308 33 chr15 96216572 96216903 -5163618 - LTR50 LTR ERVL -323 472 51 26 50 0 0 chr15 96217951 96217991 -5162530 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr15 96223556 96223584 -5156937 + AT_rich Low_complexity Low_complexity 1 28 0 1630 242 65 42 chr15 96224605 96225126 -5155395 - L1MD2 LINE L1 -16 6343 5811 228 35 0 0 chr15 96226838 96226867 -5153654 + (TC)n Simple_repeat Simple_repeat 1 29 0 426 309 22 22 chr15 96227045 96227223 -5153298 - MARNA DNA Mariner -144 442 265 1984 136 0 40 chr15 96227611 96227935 -5152586 - AluSx SINE Alu -1 311 1 851 50 0 0 chr15 96230052 96230152 -5150369 - L1PA5 LINE L1 0 6154 6055 2653 167 78 65 chr15 96230779 96231383 -5149138 - LTR9 LTR ERV1 0 612 1 456 250 29 0 chr15 96232533 96232637 -5147884 - MER81 DNA DNA -6 108 2 23 0 0 0 chr15 96233047 96233070 -5147451 + AT_rich Low_complexity Low_complexity 1 23 0 524 320 131 5 chr15 96233074 96233449 -5147072 - L1ME3A LINE L1 -235 5935 5514 322 237 32 0 chr15 96233501 96233594 -5146927 + L1MDa LINE L1 1832 1927 -4613 * 487 284 0 47 chr15 96233567 96233762 -5146759 + L1M1 LINE L1 2832 3093 -4563 890 186 76 0 chr15 96233772 96233944 -5146577 + MSTD LTR MaLR 212 396 0 21 0 0 0 chr15 96234075 96234096 -5146425 + AT_rich Low_complexity Low_complexity 1 21 0 2134 149 0 0 chr15 96234113 96234422 -5146099 + AluJb SINE Alu 1 309 -3 240 272 58 78 chr15 96235438 96235629 -5144892 - MLT1H LTR MaLR 0 549 363 1073 238 113 31 chr15 96235720 96235799 -5144722 + MLT1F LTR MaLR 49 120 -422 2058 158 3 0 chr15 96235799 96236110 -5144411 + AluSx SINE Alu 1 312 0 1073 238 113 31 chr15 96236110 96236465 -5144056 + MLT1F LTR MaLR 120 513 -29 366 287 0 0 chr15 96236497 96236584 -5143937 - MLT1H LTR MaLR -215 334 248 286 154 39 0 chr15 96236588 96236640 -5143881 - Ricksha DNA DNA -1137 909 856 1733 185 102 11 chr15 96236641 96237004 -5143517 + MSTD LTR MaLR 1 396 0 2384 231 34 24 chr15 96237029 96237561 -5142960 - MLT2B3 LTR ERVL -17 537 1 716 259 85 5 chr15 96237562 96237786 -5142735 - MLT1H LTR MaLR -307 242 1 306 212 62 71 chr15 96238003 96238116 -5142405 + LTR67 LTR ERVL 436 547 -10 735 288 13 13 chr15 96238970 96239203 -5141318 + MIR SINE MIR 12 244 -18 210 239 90 15 chr15 96240048 96240115 -5140406 + MER5A DNA MER1_type 112 183 -6 1715 35 0 5 chr15 96240715 96240949 -5139572 + L1PA2 LINE L1 5958 6155 0 225 0 0 0 chr15 96240959 96240984 -5139537 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2720 26 0 0 chr15 96240991 96241300 -5139221 + AluY SINE Alu 1 309 -2 248 156 0 0 chr15 96241699 96241744 -5138777 - MER5B DNA MER1_type -133 45 1 3240 111 7 2 chr15 96243110 96243568 -5136953 - L1PA12 LINE L1 -52 6116 5657 190 191 264 45 chr15 96243828 96243938 -5136583 - MIR SINE MIR -11 251 118 2061 171 18 31 chr15 96243950 96244341 -5136180 - MLT1B LTR MaLR 0 390 5 336 305 23 23 chr15 96244345 96244473 -5136048 - MER94 DNA DNA -6 128 1 249 240 83 42 chr15 96245304 96245400 -5135121 - MIR SINE MIR -1 261 162 774 142 35 0 chr15 96245651 96245764 -5134757 + FLAM_C SINE Alu 2 118 -25 22 0 0 0 chr15 96245764 96245786 -5134735 + AT_rich Low_complexity Low_complexity 1 22 0 470 178 44 0 chr15 96245889 96245979 -5134542 + MER103 DNA DNA 56 149 -17 2335 165 136 137 chr15 96246236 96247413 -5133108 + pTR5 LTR ERV1 743 2425 -13 184 240 80 0 chr15 96247573 96247623 -5132898 + L2 LINE L2 3184 3237 -76 494 266 0 0 chr15 96247854 96247963 -5132558 - MER81 DNA DNA -5 109 1 216 158 40 0 chr15 96249218 96249294 -5131227 + (TA)n Simple_repeat Simple_repeat 1 79 0 2538 153 36 14 chr15 96250299 96250718 -5129803 - MSTA LTR MaLR 0 428 1 420 363 6 28 chr15 96250740 96250922 -5129599 + MIR3 SINE MIR 28 205 -3 1637 100 10 110 chr15 96251253 96251569 -5128952 + AluSx SINE Alu 23 309 0 21 36 0 0 chr15 96251569 96251597 -5128924 + AT_rich Low_complexity Low_complexity 1 28 0 304 118 29 0 chr15 96251612 96251680 -5128841 + (TA)n Simple_repeat Simple_repeat 1 70 0 512 301 63 60 chr15 96251711 96252043 -5128478 + L1ME4a LINE L1 5522 5854 -267 1818 119 11 28 chr15 96252952 96253238 -5127283 + THE1B LTR MaLR 1 281 -83 219 236 79 129 chr15 96253884 96254024 -5126497 - L2 LINE L2 -19 3253 3121 196 305 17 0 chr15 96254108 96254167 -5126354 - MIR SINE MIR 0 262 203 413 299 57 47 chr15 96254546 96254757 -5125764 - MIR SINE MIR -34 228 16 33 43 0 0 chr15 96254775 96254822 -5125699 + AT_rich Low_complexity Low_complexity 1 47 0 214 287 138 63 chr15 96256391 96256565 -5123956 + L2 LINE L2 3118 3304 -9 243 288 75 47 chr15 96256566 96256752 -5123769 + L1M1 LINE L1 5620 5816 -346 301 329 101 20 chr15 96257297 96257446 -5123075 + MIR3 SINE MIR 33 193 -15 304 274 30 61 chr15 96258942 96259106 -5121415 - MER117 DNA MER1_type -33 164 6 1692 213 36 9 chr15 96260649 96261096 -5119425 - MER89 LTR ERV1 0 559 1 446 271 90 60 chr15 96261193 96261639 -5118882 - L1ME4a LINE L1 0 6121 5663 2229 128 0 0 chr15 96261773 96262079 -5118442 - AluSx SINE Alu -6 306 1 492 202 57 8 chr15 96262683 96262807 -5117714 - MER69A DNA AcHobo -2 175 46 395 289 50 38 chr15 96262825 96262984 -5117537 - MER5A DNA MER1_type -26 163 3 302 231 92 54 chr15 96263044 96263174 -5117347 - MER69 DNA AcHobo -2377 149 15 555 285 47 6 chr15 96263331 96263503 -5117018 + MIR SINE MIR 7 185 -77 572 325 48 9 chr15 96263785 96264013 -5116508 + MIR SINE MIR 15 251 -11 185 297 16 109 chr15 96265413 96265541 -5114980 - L2 LINE L2 -211 3061 2946 1961 147 0 0 chr15 96265570 96265856 -5114665 + AluSx SINE Alu 1 286 -26 396 0 0 0 chr15 96265862 96265906 -5114615 + (TG)n Simple_repeat Simple_repeat 1 44 0 372 178 0 0 chr15 96265909 96265982 -5114539 + (TA)n Simple_repeat Simple_repeat 2 74 0 3079 159 20 18 chr15 96266013 96266571 -5113950 + L1MB3 LINE L1 5625 6183 0 276 53 0 0 chr15 96268293 96268331 -5112190 + (CA)n Simple_repeat Simple_repeat 2 39 0 834 133 0 0 chr15 96268343 96268516 -5112005 + (CA)n Simple_repeat Simple_repeat 2 174 0 486 0 0 0 chr15 96269048 96269102 -5111419 + (CA)n Simple_repeat Simple_repeat 2 55 0 22 0 0 0 chr15 96269198 96269220 -5111301 + AT_rich Low_complexity Low_complexity 1 22 0 420 20 0 0 chr15 96270216 96270265 -5110256 + (CA)n Simple_repeat Simple_repeat 1 49 0 598 188 0 0 chr15 96271569 96271665 -5108856 - FRAM SINE Alu -79 97 2 21 0 0 0 chr15 96271739 96271760 -5108761 + AT_rich Low_complexity Low_complexity 1 21 0 448 281 95 55 chr15 96272227 96272611 -5107910 - L1MC/D LINE L1 -385 5785 5488 461 271 73 0 chr15 96272625 96272704 -5107817 - L1MEd LINE L1 -5948 171 99 252 43 65 0 chr15 96272704 96272750 -5107771 + (TA)n Simple_repeat Simple_repeat 1 49 0 461 271 73 0 chr15 96272750 96272821 -5107700 - L1MEd LINE L1 -6020 99 10 238 219 57 124 chr15 96273054 96273159 -5107362 - LTR33A LTR ERVL -339 184 87 574 255 70 0 chr15 96273260 96273417 -5107104 - HAL1 LINE L1 -1038 1469 1302 34 24 0 0 chr15 96273489 96273530 -5106991 + AT_rich Low_complexity Low_complexity 1 41 0 1380 226 33 26 chr15 96273798 96274187 -5106334 + HAL1 LINE L1 1456 1847 -660 953 220 6 0 chr15 96274250 96274432 -5106089 + MER58A DNA MER1_type 42 224 0 1024 265 71 41 chr15 96274432 96274922 -5105599 + HAL1 LINE L1 1848 2352 -155 542 279 86 20 chr15 96275468 96275665 -5104856 - L2 LINE L2 0 3313 3104 3804 91 21 48 chr15 96278293 96278856 -5101665 - L1PA10 LINE L1 0 6168 5621 329 68 0 0 chr15 96278856 96278900 -5101621 + L1P4 LINE L1 5644 5687 -481 2407 180 31 6 chr15 96279961 96280470 -5100051 + L1M4 LINE L1 5222 5741 -443 1382 221 70 25 chr15 96280470 96280827 -5099694 - MLT1A2 LTR MaLR 0 374 2 4128 208 58 105 chr15 96280831 96282257 -5098264 - MLT1-int LTR MaLR -6 1574 5 8129 170 20 12 chr15 96282259 96283648 -5096873 + ERVL-B1 LTR ERVL 4358 5757 -7 1201 234 42 119 chr15 96283648 96284033 -5096488 + MLT2B1 LTR ERVL 1 355 -59 198 0 0 0 chr15 96284672 96284694 -5095827 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 324 64 0 0 chr15 96284957 96285004 -5095517 + (TG)n Simple_repeat Simple_repeat 1 47 0 423 379 29 18 chr15 96285240 96285520 -5095001 - LTR16B LTR ERVL -150 314 32 1520 266 110 23 chr15 96285570 96286141 -5094380 - L2 LINE L2 -1030 2284 1664 217 266 62 0 chr15 96287672 96287736 -5092785 + MIR SINE MIR 120 187 -75 239 337 106 48 chr15 96287790 96288167 -5092354 + L2 LINE L2 2853 3251 -21 405 252 36 9 chr15 96288180 96288291 -5092230 - MIR SINE MIR -75 187 74 296 246 0 0 chr15 96289042 96289107 -5091414 + L2 LINE L2 3207 3271 -1 536 249 12 35 chr15 96290393 96290562 -5089959 - L1MA10 LINE L1 0 6334 6170 1512 200 33 31 chr15 96290631 96291253 -5089268 - L1ME LINE L1 -571 5595 4976 * 2774 260 64 18 chr15 96291229 96292267 -5088254 - L1ME LINE L1 -1720 4426 3342 285 29 0 0 chr15 96292526 96292560 -5087961 + (TA)n Simple_repeat Simple_repeat 1 34 0 29 0 0 0 chr15 96292643 96292672 -5087849 + AT_rich Low_complexity Low_complexity 1 29 0 22 80 0 0 chr15 96294308 96294358 -5086163 + AT_rich Low_complexity Low_complexity 1 50 0 226 257 14 54 chr15 96295390 96295464 -5085057 - MIR SINE MIR -114 148 78 260 213 113 12 chr15 96295555 96295635 -5084886 - MER5A DNA MER1_type -92 97 10 30 59 0 0 chr15 96296720 96296771 -5083750 + AT_rich Low_complexity Low_complexity 1 51 0 439 288 128 27 chr15 96297139 96297358 -5083163 + MIR SINE MIR 5 245 -17 471 283 125 77 chr15 96297519 96297676 -5082845 + L2 LINE L2 2575 2723 -590 1297 181 79 55 chr15 96297676 96297968 -5082553 - AluJo SINE Alu -3 299 1 471 283 125 77 chr15 96297968 96298495 -5082026 + L2 LINE L2 2723 3313 0 2023 133 0 31 chr15 96298531 96298848 -5081673 + AluSx SINE Alu 1 307 -5 2955 6 0 0 chr15 96299643 96299958 -5080563 - AluYb8 SINE Alu -3 315 1 3971 105 12 5 chr15 96300361 96300943 -5079578 + L1P LINE L1 4430 5015 -1131 2830 174 54 3 chr15 96500955 96501570 -4878951 - L1M2 LINE L1 -4285 2098 1010 814 186 10 55 chr15 96501677 96501876 -4878645 + AluJo SINE Alu 105 294 -18 270 0 0 0 chr15 96502392 96502422 -4878099 + (A)n Simple_repeat Simple_repeat 1 30 0 2046 153 0 6 chr15 96502535 96502849 -4877672 - AluSx SINE Alu 0 312 1 835 176 27 58 chr15 96503019 96503207 -4877314 - AluJb SINE Alu -9 303 122 1921 122 0 38 chr15 96503210 96503497 -4877024 - AluSx SINE Alu -36 276 1 1833 24 0 0 chr15 96503873 96504078 -4876443 - L1P1 LINE L1 -433 5722 5518 976 226 122 0 chr15 96504130 96504386 -4876135 + MER58 DNA MER1_type 10 2376 -44 2002 116 36 0 chr15 96504390 96504665 -4875856 + AluSx SINE Alu 1 285 -27 2263 107 0 3 chr15 96505360 96505670 -4874851 + AluSg1 SINE Alu 1 309 0 1087 199 137 12 chr15 96506308 96506564 -4873957 - AluJo SINE Alu -14 288 1 7658 125 172 30 chr15 96507388 96508880 -4871641 - pTR5 LTR ERV1 0 2438 735 2271 100 0 7 chr15 96509840 96510141 -4870380 - AluSc SINE Alu -10 299 1 1737 159 10 29 chr15 96510144 96510458 -4870063 - AluJo SINE Alu -4 308 1 840 204 204 8 chr15 96511887 96512152 -4868369 - L1MD2 LINE L1 -12 6347 6031 * 1603 117 8 8 chr15 96512144 96512391 -4868130 + MSTA-int LTR MaLR 1405 1651 0 2265 136 123 5 chr15 96512391 96512773 -4867748 + MSTA LTR MaLR 1 427 -1 312 91 0 0 chr15 96513246 96513290 -4867231 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 468 296 0 0 chr15 96514977 96515112 -4865409 - MER113 DNA MER1_type? -125 396 262 3934 242 65 43 chr15 96515273 96517314 -4863207 - L1MDa LINE L1 -1645 4895 2637 492 169 0 0 chr15 96517315 96517392 -4863129 - MSTA LTR MaLR -351 77 1 6190 171 90 62 chr15 96517397 96518927 -4861594 - MSTA-int LTR MaLR -5 1575 3 589 105 0 23 chr15 96518928 96519014 -4861507 - MSTA LTR MaLR 0 428 345 2462 269 78 22 chr15 96519018 96520239 -4860282 - L1MDa LINE L1 -4983 1557 31 206 311 79 40 chr15 96520250 96520427 -4860094 - MIR3 SINE MIR -2 206 23 21 0 0 0 chr15 96522370 96522391 -4858130 + AT_rich Low_complexity Low_complexity 1 21 0 249 286 116 0 chr15 96523127 96523239 -4857282 - MIR SINE MIR -73 189 65 2014 171 16 6 chr15 96523623 96523986 -4856535 + MER93b LTR ERV1 5 371 -2 307 257 150 27 chr15 96524339 96524517 -4856004 - MIR SINE MIR -56 206 12 355 217 0 0 chr15 96526049 96526118 -4854403 - MER103 DNA DNA -45 121 53 2839 236 13 16 chr15 96527366 96527998 -4852523 + MER82 DNA MER2_type 17 646 -7 8831 214 72 19 chr15 96529225 96532063 -4848458 - L1PA15-16 LINE L1 -882 5967 2727 508 70 99 0 chr15 96532080 96532151 -4848370 - U6 snRNA snRNA 0 107 30 2681 225 42 25 chr15 96532166 96532873 -4847648 + L1ME1 LINE L1 5318 6036 -130 225 61 0 0 chr15 96532899 96532932 -4847589 + L1ME1 LINE L1 6129 6161 -5 560 311 88 21 chr15 96535333 96535754 -4844767 - L1ME3A LINE L1 -319 5851 5403 2659 36 0 3 chr15 96535755 96536060 -4844461 - AluY SINE Alu -7 304 1 245 316 111 5 chr15 96536193 96536383 -4844138 - L1ME3A LINE L1 -767 5379 5170 2385 102 3 0 chr15 96536384 96536688 -4843833 - AluSx SINE Alu -7 305 1 346 254 22 30 chr15 96536688 96536822 -4843699 + L1M4 LINE L1 4485 4617 -1529 181 295 162 23 chr15 96536954 96537127 -4843394 + MIR SINE MIR 51 247 -15 21 71 0 0 chr15 96537399 96537441 -4843080 + AT_rich Low_complexity Low_complexity 1 42 0 398 297 5 60 chr15 96537528 96537713 -4842808 - MIR SINE MIR -54 208 34 1808 222 86 44 chr15 96538742 96539268 -4841253 + MER69 DNA AcHobo 21 568 -658 1141 212 103 58 chr15 96539252 96539756 -4840765 + MER69 DNA AcHobo 1998 2524 -2 * 369 0 0 0 chr15 96540009 96540050 -4840471 + (CA)n Simple_repeat Simple_repeat 1 41 0 253 337 11 0 chr15 96541494 96541589 -4838932 - MIR SINE MIR -11 251 156 2288 107 7 0 chr15 96541944 96542243 -4838278 + AluSp SINE Alu 1 301 -12 362 233 0 0 chr15 96542262 96542352 -4838169 - L1MC4 LINE L1 -1339 6703 6614 289 273 30 0 chr15 96542264 96542363 -4838158 + L1MC4 LINE L1 6614 6715 -1327 * 1863 118 0 41 chr15 96543516 96543787 -4836734 + AluSx SINE Alu 1 260 -52 568 219 7 7 chr15 96543797 96543952 -4836569 + GA-rich Low_complexity Low_complexity 2 156 0 663 278 39 10 chr15 96544007 96544212 -4836309 - MIR SINE MIR -2 260 50 1424 249 18 72 chr15 96544300 96544742 -4835779 + L1M4 LINE L1 2 419 -6123 * 3264 223 49 24 chr15 96544733 96545801 -4834720 + L1M4 LINE L1 806 1927 -4719 209 239 0 70 chr15 96546011 96546082 -4834439 + C-rich Low_complexity Low_complexity 2 67 0 248 109 0 22 chr15 96546415 96546461 -4834060 + (GGA)n Simple_repeat Simple_repeat 3 47 0 2942 109 64 11 chr15 96546835 96547303 -4833218 + LTR3b LTR ERVK 8 500 0 304 79 0 0 chr15 96547303 96547341 -4833180 + LTR3b LTR ERVK 463 500 0 2299 69 0 7 chr15 96547486 96547777 -4832744 + AluY SINE Alu 1 289 -22 297 318 29 46 chr15 96548308 96548404 -4832117 - L1M4 LINE L1 -1585 4561 4465 2284 109 0 3 chr15 96548404 96548715 -4831806 - AluSq SINE Alu -3 310 1 297 318 29 46 chr15 96548715 96548857 -4831664 - L1M4 LINE L1 -1681 4465 4327 554 143 0 0 chr15 96548872 96548956 -4831565 + AluJo SINE Alu 11 94 -218 27382 37 17 3 chr15 96548956 96554981 -4825540 + L1PA3 LINE L1 5 6155 0 1199 142 4 62 chr15 96554983 96555209 -4825312 + AluJo SINE Alu 82 294 -18 261 0 0 0 chr15 96555725 96555754 -4824767 + (A)n Simple_repeat Simple_repeat 1 29 0 24 0 0 0 chr15 96555866 96555890 -4824631 + AT_rich Low_complexity Low_complexity 1 24 0 1471 148 0 9 chr15 96555890 96556113 -4824408 - AluSg/x SINE Alu -22 290 70 2929 154 40 10 chr15 96557416 96557916 -4822605 - MLT2B2 LTR ERVL 0 515 1 688 268 149 0 chr15 96557933 96558161 -4822360 - LTR16C LTR ERVL -69 422 161 1741 218 50 34 chr15 96559453 96559949 -4820572 + MLT1D LTR MaLR 2 505 0 228 268 82 10 chr15 96561562 96561659 -4818862 - L2 LINE L2 -47 3225 3122 343 317 38 16 chr15 96561731 96561914 -4818607 + MLT1I LTR MaLR 8 194 -215 763 238 19 124 chr15 96562011 96562326 -4818195 - LTR67 LTR ERVL -270 287 6 2417 196 45 38 chr15 96562689 96563195 -4817326 + Tigger7 DNA MER2_type 5 514 -1973 387 220 13 6 chr15 96563318 96563477 -4817044 + (TA)n Simple_repeat Simple_repeat 2 161 0 210 37 0 0 chr15 96563477 96563504 -4817017 + (GA)n Simple_repeat Simple_repeat 2 28 0 934 287 120 28 chr15 96563812 96564269 -4816252 + MLT1J LTR MaLR 11 509 -2 188 122 24 0 chr15 96564280 96564321 -4816200 + (TA)n Simple_repeat Simple_repeat 1 42 0 242 266 43 53 chr15 96564369 96564463 -4816058 - MIR SINE MIR -59 203 111 239 312 78 7 chr15 96565420 96565561 -4814960 + L3b LINE CR1 1102 1252 -331 220 284 39 24 chr15 96566549 96566676 -4813845 - MIR SINE MIR -60 148 20 369 179 179 115 chr15 96567203 96567421 -4813100 + MLT1L LTR MaLR 1 232 -383 11146 27 0 2 chr15 96567676 96569731 -4810790 + L1PA4 LINE L1 4103 6155 0 484 233 19 19 chr15 96569732 96569835 -4810686 - MER69 DNA AcHobo -663 563 461 396 299 31 8 chr15 96569899 96570026 -4810495 - HERV16 LTR ERVL -3614 1382 1253 1886 270 49 36 chr15 96570360 96570402 -4810119 - HERV16 LTR ERVL -3803 1193 1153 2182 107 0 10 chr15 96570402 96570702 -4809819 - AluSq SINE Alu -16 297 1 1886 270 49 36 chr15 96570702 96571243 -4809278 - HERV16 LTR ERVL -3843 1153 597 2095 151 0 0 chr15 96571243 96571547 -4808974 - AluSx SINE Alu -8 304 1 1886 270 49 36 chr15 96571547 96571650 -4808871 - HERV16 LTR ERVL -4399 597 497 539 298 30 76 chr15 96572171 96572264 -4808257 - LTR16A LTR ERVL -146 304 208 2439 131 14 3 chr15 96572264 96572624 -4807897 + THE1B LTR MaLR 1 364 0 539 298 30 76 chr15 96572624 96572832 -4807689 - LTR16A LTR ERVL -242 208 17 568 251 11 114 chr15 96574508 96574582 -4805939 - LTR16C LTR ERVL -2 489 409 2165 169 32 0 chr15 96574582 96574960 -4805561 - MLT1B LTR MaLR 0 390 1 568 251 11 114 chr15 96574960 96575148 -4805373 - LTR16C LTR ERVL -82 409 254 2425 223 116 39 chr15 96575175 96575937 -4804584 - MER99 DNA DNA -1 827 8 207 279 25 25 chr15 96576740 96576819 -4803702 - MER5A DNA MER1_type -26 163 85 442 273 99 6 chr15 96577706 96577878 -4802643 - LTR41 LTR ERVL -585 188 1 664 73 0 0 chr15 96578095 96578177 -4802344 - AluSg/x SINE Alu -14 296 215 309 118 0 0 chr15 96578207 96578258 -4802263 + (TC)n Simple_repeat Simple_repeat 1 51 0 641 276 32 47 chr15 96578627 96578906 -4801615 - MLT1L LTR MaLR -217 398 124 365 183 0 0 chr15 96578998 96579069 -4801452 - AluJo SINE Alu -168 134 64 187 369 12 12 chr15 96579955 96580039 -4800482 + MIR3 SINE MIR 3 86 -122 947 244 92 111 chr15 96580041 96580537 -4799984 + MLT1H1 LTR MaLR 1 489 -101 355 272 22 10 chr15 96580676 96580814 -4799707 + MIR SINE MIR 93 231 -31 1792 210 3 3 chr15 96581119 96581457 -4799064 + MLT2D LTR ERVL 3 340 -74 291 311 27 40 chr15 96581894 96582116 -4798405 - L2 LINE L2 -555 2759 2541 270 283 61 20 chr15 96583015 96583114 -4797407 + LTR16C LTR ERVL 32 134 -357 1146 225 22 103 chr15 96583179 96583548 -4796973 + LTR16C LTR ERVL 148 486 -5 603 74 0 0 chr15 96584542 96584623 -4795898 + (CA)n Simple_repeat Simple_repeat 1 81 0 304 267 129 0 chr15 96584668 96584769 -4795752 + MIR SINE MIR 119 232 -30 220 277 43 11 chr15 96584821 96584915 -4795606 - MIR SINE MIR -115 147 51 368 305 75 15 chr15 96586436 96586654 -4793867 - MIR SINE MIR -18 244 16 354 312 50 7 chr15 96587269 96587410 -4793111 + L2 LINE L2 3167 3313 0 1613 99 0 36 chr15 96587922 96588174 -4792347 + L1PA10 LINE L1 5924 6166 -2 2271 263 61 25 chr15 96588760 96589375 -4791146 + L1ME3A LINE L1 4915 5612 -558 1511 196 19 54 chr15 96589375 96589521 -4791000 + AluJb SINE Alu 1 151 -161 2367 101 0 3 chr15 96589521 96589828 -4790693 + AluY SINE Alu 1 306 -5 1511 196 19 54 chr15 96589828 96589998 -4790523 + AluJb SINE Alu 151 306 -6 2271 263 61 25 chr15 96589998 96590453 -4790068 + L1ME3A LINE L1 5612 6049 -121 1433 258 44 44 chr15 96590734 96591299 -4789222 + L1MC5 LINE L1 6919 7483 -478 379 289 47 60 chr15 96591398 96591630 -4788891 + L1ME3A LINE L1 5934 6162 -8 25 0 0 0 chr15 96592273 96592298 -4788223 + AT_rich Low_complexity Low_complexity 1 25 0 3585 79 0 6 chr15 96592397 96592880 -4787641 - L1PA8 LINE L1 0 6172 5693 3253 53 19 0 chr15 96592914 96593327 -4787194 + L1P3 LINE L1 5266 5686 -468 363 319 8 0 chr15 96593505 96593624 -4786897 + MIR SINE MIR 45 164 -98 236 242 50 20 chr15 96593669 96593768 -4786753 + MIR SINE MIR 161 262 0 349 309 176 28 chr15 96593850 96594241 -4786280 + L2 LINE L2 2824 3272 0 21 57 0 0 chr15 96595032 96595067 -4785454 + AT_rich Low_complexity Low_complexity 1 35 0 1758 246 67 69 chr15 96595264 96596276 -4784245 + L1MC5 LINE L1 6906 7915 -46 219 36 0 0 chr15 96596675 96596703 -4783818 + (TG)n Simple_repeat Simple_repeat 2 29 0 2107 120 18 87 chr15 96597104 96597312 -4783209 + THE1B LTR MaLR 1 171 -193 258 81 0 0 chr15 96597312 96597349 -4783172 + (TG)n Simple_repeat Simple_repeat 2 38 0 2107 120 18 87 chr15 96597349 96597531 -4782990 + THE1B LTR MaLR 171 364 0 230 179 18 0 chr15 96597532 96597588 -4782933 + (TATAA)n Simple_repeat Simple_repeat 3 59 0 230 267 40 0 chr15 96598148 96598223 -4782298 - L1MC/D LINE L1 -1920 5888 5811 440 48 0 65 chr15 96598319 96598401 -4782120 - AluSp/q SINE Alu 0 313 233 288 0 0 0 chr15 96598406 96598438 -4782083 + (CA)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr15 96598665 96598686 -4781835 + AT_rich Low_complexity Low_complexity 1 21 0 1040 288 62 61 chr15 96598814 96598842 -4781679 - L2 LINE L2 -38 3275 3249 3263 117 11 84 chr15 96598842 96599139 -4781382 + LTR26B LTR ERV1 1 237 -294 396 0 0 0 chr15 96599139 96599183 -4781338 + (CA)n Simple_repeat Simple_repeat 1 44 0 3263 117 11 84 chr15 96599183 96599458 -4781063 + LTR26B LTR ERV1 237 531 0 1040 288 62 61 chr15 96599458 96600581 -4779940 - L2 LINE L2 -64 3249 2120 1947 144 72 17 chr15 96601259 96601621 -4778900 + MLT2C2 LTR ERVL 1 423 -41 259 137 137 0 chr15 96601667 96601718 -4778803 + MLT2C2 LTR ERVL 401 458 -6 185 367 78 16 chr15 96601825 96601953 -4778568 + MIR SINE MIR 11 146 -116 218 297 25 63 chr15 96602575 96602778 -4777743 + MIR3 SINE MIR 2 196 -63 478 296 83 10 chr15 96603580 96603806 -4776715 - MIR SINE MIR -10 252 11 2634 181 73 14 chr15 96604512 96605003 -4775518 - MLT2B1 LTR ERVL 0 520 1 1835 177 98 0 chr15 96606069 96606386 -4774135 - MER7A DNA MER2_type 0 346 1 230 277 11 53 chr15 96606412 96606506 -4774015 - MIR3 SINE MIR -31 177 88 8414 178 122 15 chr15 96606905 96607733 -4772788 - MER52A LTR ERV1 0 1755 1017 2997 3 0 0 chr15 96607733 96608051 -4772470 - AluYb8 SINE Alu 0 318 1 8414 178 122 15 chr15 96608051 96608807 -4771714 - MER52A LTR ERV1 -738 1017 1 204 233 96 14 chr15 96608963 96609036 -4771485 + MIR SINE MIR 104 182 -80 491 221 20 74 chr15 96609690 96609839 -4770682 + LTR55 LTR ERV 1 141 -407 1035 205 124 53 chr15 96609897 96610277 -4770244 + LTR55 LTR ERV 132 538 -10 212 307 165 8 chr15 96610315 96610442 -4770079 + MIR SINE MIR 33 179 -83 691 47 0 75 chr15 96611067 96611173 -4769348 - AluY SINE Alu -7 304 207 694 182 61 0 chr15 96611186 96611318 -4769203 + MER3 DNA MER1_type 7 146 -63 283 333 85 47 chr15 96611621 96611879 -4768642 - L2 LINE L2 -667 2647 2380 183 314 0 43 chr15 96612381 96612451 -4768070 + L2 LINE L2 3206 3272 0 316 282 78 0 chr15 96612944 96613047 -4767474 + L2 LINE L2 3203 3313 0 187 373 22 52 chr15 96614183 96614317 -4766204 + MIR SINE MIR 127 256 -6 783 215 18 36 chr15 96614549 96614563 -4765958 - L1MEc LINE L1 -3655 2560 2547 6911 126 59 49 chr15 96614563 96615103 -4765418 + Tigger3b DNA MER2_type 1 534 -2494 2137 104 18 0 chr15 96615103 96615418 -4765103 - AluSq SINE Alu 0 320 1 6911 126 59 49 chr15 96615418 96616094 -4764427 + Tigger3b DNA MER2_type 534 1230 -1 783 215 18 36 chr15 96616094 96616298 -4764223 - L1MEc LINE L1 -3668 2547 2346 2037 252 85 29 chr15 96616301 96617329 -4763192 - L1MEc LINE L1 -4397 1999 888 828 278 60 8 chr15 96617326 96617592 -4762929 - L1MEc LINE L1 -6091 305 26 * 279 0 0 0 chr15 96617684 96617715 -4762806 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 238 325 0 13 chr15 96617766 96617843 -4762678 + CT-rich Low_complexity Low_complexity 3 78 0 254 243 68 0 chr15 96617848 96617922 -4762599 - L2 LINE L2 -9 3263 3185 318 50 0 0 chr15 96618055 96618095 -4762426 + (TG)n Simple_repeat Simple_repeat 2 41 0 414 247 117 39 chr15 96618241 96618395 -4762126 + MIR SINE MIR 91 256 -6 2226 123 0 0 chr15 96618793 96619093 -4761428 - AluSx SINE Alu -12 300 1 242 332 65 14 chr15 96619284 96619501 -4761020 + L2 LINE L2 2832 3059 -213 930 292 106 25 chr15 96621035 96621685 -4758836 + L1MC/D LINE L1 3809 4511 -1635 243 198 161 25 chr15 96621701 96621782 -4758739 + L1MC/D LINE L1 5485 5576 -783 30 0 0 0 chr15 96622191 96622221 -4758300 + AT_rich Low_complexity Low_complexity 1 30 0 2307 109 3 3 chr15 96624299 96624611 -4755910 - AluSx SINE Alu 0 312 1 202 283 19 0 chr15 96625058 96625111 -4755410 + MIR SINE MIR 111 164 -98 198 274 0 0 chr15 96625236 96625287 -4755234 + MIR3 SINE MIR 136 186 -22 1644 187 3 14 chr15 96625324 96625618 -4754903 - AluJo SINE Alu -21 291 1 324 230 236 19 chr15 96625764 96625925 -4754596 - MIR SINE MIR -10 252 57 327 218 26 26 chr15 96626071 96626149 -4754372 + HAL1 LINE L1 4 81 -2426 1778 134 75 17 chr15 96626187 96626479 -4754042 + AluSg SINE Alu 1 309 -1 21 71 0 0 chr15 96626553 96626595 -4753926 + AT_rich Low_complexity Low_complexity 1 42 0 1664 198 96 3 chr15 96626990 96627324 -4753197 + MLT1A1 LTR MaLR 1 365 0 587 296 185 25 chr15 96627406 96628118 -4752403 + HAL1 LINE L1 825 1650 -857 213 245 0 49 chr15 96628147 96628249 -4752272 + A-rich Low_complexity Low_complexity 2 98 0 196 161 0 0 chr15 96628751 96628782 -4751739 + L3 LINE CR1 1539 1569 -8 2246 112 0 10 chr15 96629072 96629376 -4751145 + AluSx SINE Alu 1 301 -11 3153 191 41 2 chr15 96629800 96630412 -4750109 - L1MC3 LINE L1 0 7785 7150 1815 152 20 26 chr15 96630422 96630725 -4749796 - AluJo SINE Alu -11 301 1 250 243 180 85 chr15 96631388 96631577 -4748944 - MIR SINE MIR -44 218 12 852 214 128 5 chr15 96632132 96632319 -4748202 - MER63A DNA MER1_type 0 210 1 214 341 0 12 chr15 96633559 96633641 -4746880 + MIR3 SINE MIR 108 188 -20 187 333 0 40 chr15 96634113 96634188 -4746333 - MIR SINE MIR -6 256 185 232 306 93 52 chr15 96634606 96634799 -4745722 - MIR SINE MIR -28 234 34 428 254 25 107 chr15 96634801 96634936 -4745585 + L3 LINE CR1 1376 1520 -57 2125 103 3 27 chr15 96634936 96635236 -4745285 + AluSp SINE Alu 1 293 -20 2865 16 0 0 chr15 96635240 96635553 -4744968 + AluYb8 SINE Alu 1 313 -5 428 254 25 107 chr15 96635553 96635609 -4744912 + L3 LINE CR1 1523 1556 -21 865 247 126 40 chr15 96635636 96636009 -4744512 + MLT1I LTR MaLR 5 409 0 2196 213 53 5 chr15 96637618 96638055 -4742466 + MER74C LTR ERVL 3 460 0 391 298 73 8 chr15 96638263 96638387 -4742134 + L2 LINE L2 3140 3271 -1 228 167 0 74 chr15 96638427 96638481 -4742040 - L2 LINE L2 0 3313 3264 295 311 33 49 chr15 96638690 96638812 -4741709 + L2 LINE L2 3153 3272 0 736 240 62 6 chr15 96638892 96639071 -4741450 - MER5A DNA MER1_type 0 189 1 1355 240 109 26 chr15 96639340 96639807 -4740714 + L1ME3A LINE L1 5651 6156 -14 199 274 249 25 chr15 96641442 96641723 -4738798 + L2 LINE L2 2261 2604 -710 973 191 21 16 chr15 96641769 96641963 -4738558 + MER20 DNA MER1_type 25 219 0 197 275 12 38 chr15 96642609 96642689 -4737832 - L3 LINE CR1 -23 1554 1477 262 388 0 8 chr15 96642690 96642819 -4737702 + (CA)n Simple_repeat Simple_repeat 1 128 0 303 291 56 77 chr15 96642837 96643033 -4737488 - L3 LINE CR1 -125 1452 1261 517 344 61 13 chr15 96643200 96643511 -4737010 + L1MC4a LINE L1 5574 5899 -1909 4853 76 23 2 chr15 96644550 96645169 -4735352 - L1PA14 LINE L1 -9 6152 5521 354 45 0 0 chr15 96645604 96645648 -4734873 + (CA)n Simple_repeat Simple_repeat 1 44 0 474 327 50 30 chr15 96649520 96649722 -4730799 + MIR SINE MIR 51 256 -6 4723 165 32 13 chr15 96649784 96650610 -4729911 + L1MA8 LINE L1 4465 5274 -1017 2584 169 19 5 chr15 96650610 96651030 -4729491 + MSTB LTR MaLR 1 426 0 4723 165 32 13 chr15 96651030 96651811 -4728710 + L1MA8 LINE L1 5274 6262 -29 1310 138 52 30 chr15 96651571 96651837 -4728684 + L1MA8 LINE L1 6017 6291 0 1245 285 97 35 chr15 96652314 96652936 -4727585 - MLT2F LTR ERVL -3 660 1 340 275 84 21 chr15 96654184 96654326 -4726195 - Charlie8 DNA MER1_type -2247 170 20 523 233 68 40 chr15 96654527 96654703 -4725818 + L1MEc LINE L1 1700 1880 -4516 32 106 0 0 chr15 96654707 96654830 -4725691 + AT_rich Low_complexity Low_complexity 1 123 0 501 239 50 83 chr15 96654853 96654926 -4725595 + L1MEc LINE L1 1903 1977 -4419 2075 91 4 0 chr15 96654926 96655190 -4725331 + AluSg SINE Alu 36 300 -10 501 239 50 83 chr15 96655190 96655417 -4725104 + L1MEc LINE L1 1977 2193 -4203 1060 98 0 0 chr15 96655421 96655554 -4724967 + AluSp SINE Alu 1 133 -180 1357 248 34 18 chr15 96655556 96656038 -4724483 + L1MEc LINE L1 2163 2612 -3603 2613 173 57 12 chr15 96656058 96656554 -4723967 - MLT2B1 LTR ERVL -2 518 1 22 35 0 0 chr15 96656801 96656830 -4723691 + AT_rich Low_complexity Low_complexity 1 29 0 2231 121 3 0 chr15 96657867 96658172 -4722349 + AluSx SINE Alu 2 307 -5 405 0 20 0 chr15 96658517 96658567 -4721954 + MADE1 DNA Mariner 1 51 -29 360 282 68 17 chr15 96658605 96658722 -4721799 + MIR SINE MIR 57 179 -83 2370 93 0 0 chr15 96659126 96659417 -4721104 + AluSg1 SINE Alu 1 291 -18 459 261 228 8 chr15 96660639 96660992 -4719529 + L2 LINE L2 2586 3001 -312 2156 95 0 11 chr15 96660999 96661313 -4719208 - AluSx SINE Alu 0 311 1 832 196 13 0 chr15 96661319 96661472 -4719049 - AluJb SINE Alu -18 294 140 277 276 57 0 chr15 96661476 96661581 -4718940 + L2 LINE L2 3003 3113 -200 4810 186 39 6 chr15 96661682 96662526 -4717995 + L1M1 LINE L1 195 1066 -6499 1270 266 97 1 chr15 96662795 96663536 -4716985 + L1ME LINE L1 4925 5732 -438 255 244 23 47 chr15 96663659 96663745 -4716776 - L2 LINE L2 0 3272 3189 650 133 29 0 chr15 96663748 96663853 -4716668 - MER4B-int LTR ERV1 -4022 2736 2629 * 1860 144 52 32 chr15 96663833 96664202 -4716319 + MER4B-int LTR ERV1 2720 3095 -3663 * 4222 153 27 3 chr15 96664180 96664842 -4715679 + MER4B-int LTR ERV1 3411 4088 -2670 2863 130 20 9 chr15 96664841 96665279 -4715242 + MER4B-int LTR ERV1 4452 4894 -1864 * 477 162 212 0 chr15 96665380 96665479 -4715042 + MER20 DNA MER1_type 100 219 0 758 195 8 0 chr15 96665560 96665688 -4714833 - FLAM_A SINE Alu -4 129 1 476 249 146 24 chr15 96666902 96667115 -4713406 - MIR SINE MIR -14 248 10 1324 175 7 6 chr15 96668155 96668600 -4711921 - MLT1D LTR MaLR 0 505 3 682 116 9 12 chr15 96668633 96668742 -4711779 - MLT1D LTR MaLR -407 98 3 597 263 25 12 chr15 96668924 96669095 -4711426 + MER45A DNA AcHobo 4 177 -1 506 286 60 16 chr15 96669124 96669306 -4711215 - LTR16A LTR ERVL -120 330 141 474 269 128 45 chr15 96669396 96669481 -4711040 - L1ME3 LINE L1 -28 6134 6057 2286 97 3 3 chr15 96669481 96669781 -4710740 + AluSg SINE Alu 1 300 -10 474 269 128 45 chr15 96669781 96669937 -4710584 - L1ME3 LINE L1 -105 6057 5873 653 253 71 6 chr15 96669988 96670170 -4710351 - L1ME3 LINE L1 -389 5773 5580 250 276 31 10 chr15 96670725 96670823 -4709698 + MIR SINE MIR 117 216 -46 2191 136 0 0 chr15 96671230 96671540 -4708981 + AluSx SINE Alu 1 310 -2 2426 93 0 0 chr15 96673256 96673556 -4706965 - AluSx SINE Alu -12 300 1 3397 109 40 0 chr15 96673791 96674269 -4706252 - LOR1a LTR ERV1 0 497 1 556 253 0 19 chr15 96674433 96674587 -4705934 + MIR SINE MIR 23 173 -89 2072 132 51 31 chr15 96676034 96676390 -4704131 - THE1B LTR MaLR -1 363 1 325 272 150 12 chr15 96676720 96676893 -4703628 + L1ME4a LINE L1 5692 5888 -233 1863 139 0 4 chr15 96678009 96678283 -4702238 + AluJb SINE Alu 8 280 -32 22 0 0 0 chr15 96678283 96678305 -4702216 + AT_rich Low_complexity Low_complexity 1 22 0 195 236 28 69 chr15 96678851 96678923 -4701598 + MIR SINE MIR 70 138 -124 225 302 47 31 chr15 96678991 96679120 -4701401 - MER5A DNA MER1_type -32 157 27 1847 163 10 13 chr15 96679380 96679693 -4700828 - AluJo SINE Alu 0 312 1 2717 183 52 17 chr15 96680220 96680757 -4699764 - MER89 LTR ERV1 -1 558 3 29 0 0 0 chr15 96681392 96681421 -4699100 + AT_rich Low_complexity Low_complexity 1 29 0 248 26 0 53 chr15 96681627 96681665 -4698856 + (TTTTTG)n Simple_repeat Simple_repeat 5 40 0 2122 118 7 0 chr15 96681775 96682063 -4698458 - AluSx SINE Alu -22 290 1 2185 72 48 17 chr15 96682068 96682359 -4698162 - AluY SINE Alu -11 300 1 227 299 103 9 chr15 96682637 96682851 -4697670 + L1ME LINE L1 5266 5499 -667 377 141 14 0 chr15 96682991 96683062 -4697459 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 282 160 0 0 chr15 96683170 96683220 -4697301 + (ATGGTG)n Simple_repeat Simple_repeat 4 53 0 730 87 0 10 chr15 96685184 96685288 -4695233 + AluSc SINE Alu 170 272 -37 884 94 0 31 chr15 96685291 96685450 -4695071 + (GAAA)n Simple_repeat Simple_repeat 3 156 0 609 167 10 0 chr15 96685862 96685964 -4694557 + AluJb SINE Alu 149 251 -61 209 33 33 0 chr15 96686444 96686474 -4694047 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5568 47 0 0 chr15 96686474 96687134 -4693387 - L1PA8 LINE L1 -16 6156 5497 22 0 0 0 chr15 96687447 96687469 -4693052 + AT_rich Low_complexity Low_complexity 1 22 0 1087 100 0 20 chr15 96687471 96687621 -4692900 + AluSg SINE Alu 1 147 -163 2051 153 0 6 chr15 96688176 96688490 -4692031 - AluJb SINE Alu 0 312 1 2372 138 9 19 chr15 96688761 96689180 -4691341 + L1MA8 LINE L1 5874 6288 -3 26 50 0 0 chr15 96689180 96689220 -4691301 + AT_rich Low_complexity Low_complexity 1 40 0 2290 91 3 13 chr15 96689306 96689642 -4690879 - AluY SINE Alu 0 311 1 343 275 100 8 chr15 96689644 96689764 -4690757 - MIR SINE MIR -113 149 19 230 241 0 0 chr15 96690152 96690210 -4690311 + L1MA8 LINE L1 6017 6074 -217 2149 133 0 0 chr15 96690236 96690530 -4689991 + AluSx SINE Alu 1 294 -18 1210 215 32 41 chr15 96690762 96691039 -4689482 + MER93a LTR ERV1 67 342 -60 2429 153 54 18 chr15 96691039 96691093 -4689428 + LOR1b LTR ERV1 1 52 -409 2445 94 0 3 chr15 96691093 96691401 -4689120 + AluY SINE Alu 1 307 -4 2429 153 54 18 chr15 96691401 96691791 -4688730 + LOR1b LTR ERV1 52 461 0 1210 215 32 41 chr15 96691791 96691852 -4688669 + MER93a LTR ERV1 342 402 0 890 197 94 35 chr15 96692003 96692257 -4688264 - ORSL DNA AcHobo 0 275 7 221 361 0 0 chr15 96694076 96694148 -4686373 - L2 LINE L2 -1 3271 3200 513 0 0 0 chr15 96694936 96694993 -4685528 + (CA)n Simple_repeat Simple_repeat 2 58 0 1460 263 108 28 chr15 96696525 96697062 -4683459 - MLT1E LTR MaLR -13 580 1 884 230 103 136 chr15 96697121 96697391 -4683130 + MER77 LTR ERV1 54 331 -365 1545 179 71 37 chr15 96697391 96697744 -4682777 + MLT1A1 LTR MaLR 1 365 0 884 230 103 136 chr15 96697744 96698137 -4682384 + MER77 LTR ERV1 331 692 -4 426 248 19 50 chr15 96698572 96698733 -4681788 - MIR SINE MIR -5 257 102 258 245 180 75 chr15 96698951 96699229 -4681292 - MER102b DNA MER1_type -1 340 34 367 324 130 52 chr15 96699483 96699891 -4680630 - L3 LINE CR1 -61 1516 1077 216 0 0 0 chr15 96699926 96699950 -4680571 + (A)n Simple_repeat Simple_repeat 1 24 0 723 197 0 8 chr15 96700142 96700274 -4680247 + FLAM_C SINE Alu 2 132 -11 2655 33 0 0 chr15 96700459 96700758 -4679763 + AluY SINE Alu 1 299 -12 667 251 186 18 chr15 96700759 96701034 -4679487 - L1ME3A LINE L1 -9 6161 5841 212 389 0 0 chr15 96701547 96701637 -4678884 - L3 LINE CR1 -600 977 888 398 264 38 61 chr15 96702162 96702374 -4678147 + L1ME LINE L1 5533 5739 -382 669 264 126 51 chr15 96704144 96704478 -4676043 + MLT1J2 LTR MaLR 37 395 -55 223 403 8 15 chr15 96704730 96704864 -4675657 - L3 LINE CR1 -40 1537 1405 198 0 0 0 chr15 96705162 96705184 -4675337 + (CAGCC)n Simple_repeat Simple_repeat 1 22 0 1911 114 4 0 chr15 96707267 96707531 -4672990 + AluSx SINE Alu 48 312 0 212 311 150 33 chr15 96708349 96708529 -4671992 - MIR SINE MIR -60 202 2 208 280 144 8 chr15 96708603 96708721 -4671800 - MIR SINE MIR -30 232 99 232 330 185 0 chr15 96709041 96709214 -4671307 - L2 LINE L2 -5 3308 3104 2173 137 0 3 chr15 96709234 96709547 -4670974 + AluSx SINE Alu 1 312 0 196 338 0 25 chr15 96710860 96710940 -4669581 + MIR3 SINE MIR 9 86 -122 592 245 155 0 chr15 96711565 96711720 -4668801 + MER5A DNA MER1_type 10 188 -1 2370 104 0 13 chr15 96712072 96712389 -4668132 + AluSq SINE Alu 1 313 0 189 195 0 0 chr15 96712624 96712665 -4667856 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 363 331 74 11 chr15 96713251 96713426 -4667095 + MIR SINE MIR 40 225 -37 277 230 144 81 chr15 96713672 96713846 -4666675 + LTR33 LTR ERVL 33 217 -304 425 261 62 19 chr15 96714245 96714406 -4666115 + LTR33 LTR ERVL 345 512 -9 230 319 124 41 chr15 96714867 96715036 -4665485 + MIR3 SINE MIR 2 184 -24 1762 128 46 7 chr15 96715185 96715467 -4665054 + AluSx SINE Alu 1 293 -19 23 0 0 0 chr15 96715970 96715993 -4664528 + AT_rich Low_complexity Low_complexity 1 23 0 329 287 147 47 chr15 96716426 96716684 -4663837 + L1ME4a LINE L1 5618 5901 -220 22 0 0 0 chr15 96716898 96716920 -4663601 + AT_rich Low_complexity Low_complexity 1 22 0 556 185 81 58 chr15 96717204 96717257 -4663264 + MER96B DNA MER1_type? 241 291 -126 2073 73 3 76 chr15 96717257 96717590 -4662931 - AluSc SINE Alu 0 311 1 556 185 81 58 chr15 96717590 96717708 -4662813 + MER96B DNA MER1_type? 291 417 0 319 279 82 16 chr15 96719891 96720013 -4660508 + MIR SINE MIR 3 132 -130 180 265 43 94 chr15 96720980 96721097 -4659424 - L2 LINE L2 -183 3130 3020 209 291 198 12 chr15 96721727 96721813 -4658708 - MIR3 SINE MIR -48 160 59 465 319 51 34 chr15 96722245 96722480 -4658041 + MIR SINE MIR 15 253 -9 373 250 179 13 chr15 96723627 96723783 -4656738 + MIR SINE MIR 40 221 -41 312 267 127 27 chr15 96724144 96724294 -4656227 + Charlie8 DNA MER1_type 114 278 -2139 867 164 96 28 chr15 96724486 96724597 -4655924 + MER5A DNA MER1_type 1 103 -86 243 0 0 0 chr15 96724597 96724624 -4655897 + (TG)n Simple_repeat Simple_repeat 2 28 0 2367 69 0 10 chr15 96724624 96724927 -4655594 - AluY SINE Alu -11 300 1 867 164 96 28 chr15 96724927 96724991 -4655530 + MER5A DNA MER1_type 102 189 0 199 271 14 29 chr15 96726103 96726173 -4654348 - MIR3 SINE MIR 0 208 140 334 211 48 58 chr15 96727734 96727838 -4652683 - MIR SINE MIR -147 115 13 21 36 0 0 chr15 96728108 96728136 -4652385 + AT_rich Low_complexity Low_complexity 1 28 0 335 203 54 31 chr15 96728420 96728537 -4651984 - MIR SINE MIR -92 116 20 226 266 0 16 chr15 96728547 96728611 -4651910 + CT-rich Low_complexity Low_complexity 1 63 0 33 80 0 0 chr15 96729417 96729492 -4651029 + AT_rich Low_complexity Low_complexity 1 75 0 775 308 57 32 chr15 96729561 96730161 -4650360 - L1ME3A LINE L1 -223 5947 5323 707 242 73 0 chr15 96730515 96730680 -4649841 + MLT1K LTR MaLR 395 571 -17 207 0 0 0 chr15 96730966 96730989 -4649532 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 808 249 67 107 chr15 96732426 96732892 -4647629 + MLT1J LTR MaLR 1 447 -64 510 106 0 0 chr15 96732963 96733029 -4647492 + AluSg/x SINE Alu 207 272 -37 4131 173 47 56 chr15 96733029 96733496 -4647025 + L1MB3 LINE L1 5023 5493 -690 2602 136 67 12 chr15 96733496 96733560 -4646961 - MSTC LTR MaLR 0 428 369 210 71 0 0 chr15 96733560 96733588 -4646933 + (TA)n Simple_repeat Simple_repeat 2 29 0 2602 136 67 12 chr15 96733588 96733929 -4646592 - MSTC LTR MaLR -59 369 1 4131 173 47 56 chr15 96733929 96734638 -4645883 + L1MB3 LINE L1 5493 6183 0 287 261 0 0 chr15 96734644 96734713 -4645808 + MLT1D LTR MaLR 1 69 -436 15743 219 35 18 chr15 96734731 96735558 -4644963 - L1PA15 LINE L1 -7 6809 5998 2530 75 0 0 chr15 96735558 96735866 -4644655 - AluY SINE Alu -1 310 3 15743 219 35 18 chr15 96735866 96740452 -4640069 - L1PA15 LINE L1 -818 5998 1286 183 42 0 0 chr15 96740799 96740823 -4639698 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1956 96 0 0 chr15 96740826 96741076 -4639445 - AluY SINE Alu -32 279 30 2141 124 3 0 chr15 96741076 96741366 -4639155 - AluSx SINE Alu -21 291 1 217 302 11 89 chr15 96741898 96742077 -4638444 + L2 LINE L2 2511 2675 -639 479 301 124 38 chr15 96742096 96742201 -4638320 - L1MEc LINE L1 -4812 1584 1489 1652 71 19 5 chr15 96742201 96742411 -4638110 - AluY SINE Alu -17 294 82 479 301 124 38 chr15 96742411 96743037 -4637484 - L1MEc LINE L1 -4907 1489 790 2190 97 30 10 chr15 96743562 96743860 -4636661 + AluSx SINE Alu 1 304 -8 261 0 0 0 chr15 96743860 96743889 -4636632 + (TA)n Simple_repeat Simple_repeat 2 30 0 1249 27 27 0 chr15 96744076 96744306 -4636215 + (TGGA)n Simple_repeat Simple_repeat 1 236 0 2156 115 0 0 chr15 96744862 96745141 -4635380 + AluSc SINE Alu 1 279 -30 548 237 17 8 chr15 96745208 96745326 -4635195 - MIR SINE MIR -102 160 42 1668 189 19 53 chr15 96745941 96746317 -4634204 - MLT1A1 LTR MaLR 0 365 3 1811 234 103 28 chr15 96746365 96746860 -4633661 - MLT1G1 LTR MaLR -13 582 51 631 172 37 66 chr15 96746932 96747094 -4633427 + MLT1G1 LTR MaLR 318 402 -7 627 317 15 5 chr15 96747150 96747352 -4633169 - MIR SINE MIR -1 261 58 2330 70 0 10 chr15 96747838 96748158 -4632363 + AluY SINE Alu 1 311 0 879 188 120 14 chr15 96748928 96749136 -4631385 + MLT2C2 LTR ERVL 179 408 -56 259 189 42 32 chr15 96749222 96749317 -4631204 + (TA)n Simple_repeat Simple_repeat 2 97 0 283 200 47 106 chr15 96749317 96749402 -4631119 - L2 LINE L2 -13 3259 3180 353 283 244 10 chr15 96749732 96749937 -4630584 - L3 LINE CR1 -9 1568 1316 216 314 43 0 chr15 96749964 96750034 -4630487 + L2 LINE L2 3241 3313 0 189 0 0 0 chr15 96750528 96750549 -4629972 + (TA)n Simple_repeat Simple_repeat 2 22 0 413 184 0 0 chr15 96750822 96750898 -4629623 - LTR33A LTR ERVL -12 511 436 531 291 10 58 chr15 96751753 96751833 -4628688 - Charlie8 DNA MER1_type -87 254 172 2452 133 8 0 chr15 96751833 96752194 -4628327 - THE1B LTR MaLR 0 364 1 531 291 10 58 chr15 96752194 96752319 -4628202 - Charlie8 DNA MER1_type -169 172 59 277 341 31 0 chr15 96752457 96752586 -4627935 + MIR SINE MIR 98 230 -32 244 294 76 76 chr15 96753167 96753364 -4627157 + HAL1 LINE L1 12 208 -2299 2192 121 10 0 chr15 96753814 96754165 -4626356 + AluSc SINE Alu 1 354 0 1159 295 90 28 chr15 96754237 96755123 -4625398 + HAL1 LINE L1 844 1784 -723 605 297 84 0 chr15 96755138 96755401 -4625120 + L2 LINE L2 2656 2940 -374 518 287 18 6 chr15 96755401 96755565 -4624956 - HAL1 LINE L1 -778 1729 1564 746 268 60 32 chr15 96755569 96755883 -4624638 + L2 LINE L2 2949 3271 -42 344 155 14 0 chr15 96755894 96755965 -4624556 + GA-rich Low_complexity Low_complexity 3 74 0 2222 154 17 22 chr15 96756146 96756718 -4623803 + L1MC/D LINE L1 5041 5610 -723 2541 61 0 0 chr15 96756720 96757013 -4623508 + AluY SINE Alu 1 293 -18 21 57 0 0 chr15 96757211 96757246 -4623275 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr15 96757294 96757331 -4623190 + AT_rich Low_complexity Low_complexity 1 37 0 1568 234 37 6 chr15 96757361 96757715 -4622806 + MLT1A1 LTR MaLR 1 365 0 941 152 0 87 chr15 96757729 96757867 -4622654 - Tigger2 DNA MER2_type -2 2706 2586 2109 129 0 3 chr15 96757867 96758162 -4622359 + AluSx SINE Alu 1 294 -18 941 152 0 87 chr15 96758162 96758207 -4622314 - Tigger2 DNA MER2_type -122 2586 2539 3190 189 62 38 chr15 96758207 96758901 -4621620 + MER50 LTR ERV1 1 711 -23 1691 128 29 11 chr15 96758902 96759183 -4621338 - Tigger2 DNA MER2_type -166 2552 2267 304 170 128 64 chr15 96759169 96759263 -4621258 - Tigger2 DNA MER2_type -2616 102 3 * 905 272 123 27 chr15 96759394 96759832 -4620689 + LTR33 LTR ERVL 1 480 -41 305 307 48 30 chr15 96759904 96760135 -4620386 + L1MC5 LINE L1 4141 4375 -1771 2226 106 0 0 chr15 96760266 96760574 -4619947 - AluSg SINE Alu 0 308 1 418 244 140 60 chr15 96760575 96761010 -4619511 + L1MC5 LINE L1 4531 5000 -1146 2351 70 0 11 chr15 96761034 96761321 -4619200 + AluY SINE Alu 13 296 -15 1550 208 73 29 chr15 96761815 96762200 -4618321 - L1MD3 LINE L1 -24 7971 7570 380 221 84 75 chr15 96762325 96762538 -4617983 + L1MC5 LINE L1 5254 5468 -2340 391 198 0 27 chr15 96762560 96762671 -4617850 + GA-rich Low_complexity Low_complexity 2 109 0 392 321 30 6 chr15 96763100 96763268 -4617253 + LTR16B LTR ERVL 293 464 0 2800 37 0 0 chr15 96765836 96766161 -4614360 - L1PA5 LINE L1 -12 6142 5818 22 0 0 0 chr15 96766739 96766761 -4613760 + AT_rich Low_complexity Low_complexity 1 22 0 618 274 6 12 chr15 96767701 96767869 -4612652 + MER5B DNA MER1_type 12 178 0 204 367 75 14 chr15 96768722 96768869 -4611652 + L2 LINE L2 3117 3272 0 2191 112 0 23 chr15 96769886 96770189 -4610332 + AluSx SINE Alu 1 296 -16 679 221 28 6 chr15 96770300 96770481 -4610040 - Charlie2a DNA MER1_type -1910 952 768 654 213 254 85 chr15 96770510 96770899 -4609622 - Charlie2a DNA MER1_type -2388 474 20 917 300 18 29 chr15 96771077 96771457 -4609064 - L2 LINE L2 -821 2493 2118 2118 201 58 74 chr15 96772581 96773269 -4607252 + L1MC5 LINE L1 6684 7360 -601 683 210 0 0 chr15 96773295 96773414 -4607107 + FLAM_A SINE Alu 6 124 -18 2201 106 0 3 chr15 96773423 96773707 -4606814 + AluSg SINE Alu 9 291 -19 477 194 7 116 chr15 96773792 96773947 -4606574 + MER5C DNA MER1_type 1 138 -186 585 218 14 0 chr15 96774250 96774392 -4606129 + L1MA10 LINE L1 6177 6320 -14 3148 274 97 40 chr15 96774427 96775298 -4605223 + L1MCc LINE L1 22 842 -6099 863 238 29 38 chr15 96775298 96775508 -4605013 + MER63A DNA MER1_type 3 210 0 3148 274 97 40 chr15 96775508 96776610 -4603911 + L1MCc LINE L1 842 2115 -4826 1993 97 38 28 chr15 96778803 96779093 -4601428 + AluSx SINE Alu 3 295 -17 1106 147 0 0 chr15 96779099 96779256 -4601265 + FRAM SINE Alu 2 158 -18 1966 109 0 8 chr15 96780256 96780513 -4600008 - AluSx SINE Alu -57 255 1 614 247 16 5 chr15 96780546 96780732 -4599789 - L1MEc LINE L1 -4598 1798 1611 961 227 59 54 chr15 96780957 96781478 -4599043 + L1MCc LINE L1 2535 3018 -3923 444 188 156 0 chr15 96781981 96782167 -4598354 + MER5C DNA MER1_type 106 320 -4 1138 196 81 71 chr15 96782169 96782649 -4597872 + L1MC5 LINE L1 7430 7914 -47 33 25 0 0 chr15 96783010 96783050 -4597471 + AT_rich Low_complexity Low_complexity 1 40 0 249 246 251 15 chr15 96783107 96783302 -4597219 + MIR SINE MIR 3 243 -19 22 35 0 0 chr15 96784041 96784070 -4596451 + AT_rich Low_complexity Low_complexity 1 29 0 2639 55 3 0 chr15 96785074 96785382 -4595139 - AluY SINE Alu -2 309 1 186 222 0 0 chr15 96785442 96785496 -4595025 + T-rich Low_complexity Low_complexity 1 54 0 2864 139 8 24 chr15 96785697 96786165 -4594356 - L1PA16 LINE L1 -1 6165 5705 312 281 74 34 chr15 96786256 96786435 -4594086 + MIR SINE MIR 76 260 -2 384 77 0 0 chr15 96787404 96787456 -4593065 + (TG)n Simple_repeat Simple_repeat 1 52 0 1406 205 19 35 chr15 96788494 96788864 -4591657 + MLT1A1 LTR MaLR 1 364 -1 190 311 137 8 chr15 96788986 96789234 -4591287 + L3 LINE CR1 477 756 -821 217 309 41 101 chr15 96789517 96789934 -4590587 + L2 LINE L2 2831 3222 -50 233 264 0 0 chr15 96789979 96790032 -4590489 + L3 LINE CR1 949 1001 -576 7550 35 3 0 chr15 96790033 96791028 -4589493 + L1PA4 LINE L1 5146 6155 0 600 198 0 8 chr15 96791135 96791261 -4589260 + AluSg/x SINE Alu 186 310 0 432 103 0 26 chr15 96792395 96792473 -4588048 + L1PA2 LINE L1 6079 6154 -1 220 276 57 29 chr15 96792625 96792730 -4587791 + L3 LINE CR1 1180 1287 -290 228 35 0 0 chr15 96794055 96794084 -4586437 + (GA)n Simple_repeat Simple_repeat 2 30 0 1144 100 6 19 chr15 96794847 96795007 -4585514 + AluSg/x SINE Alu 70 227 -85 2259 140 28 14 chr15 96795103 96795459 -4585062 + THE1B LTR MaLR 4 364 0 476 203 72 6 chr15 96796731 96796890 -4583631 + MIR SINE MIR 16 189 -62 1090 152 13 65 chr15 96797021 96797252 -4583269 - MER20 DNA MER1_type 0 219 1 450 236 103 26 chr15 96797489 96797684 -4582837 - L2 LINE L2 -3 3310 3101 237 135 0 0 chr15 96798041 96798093 -4582428 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 2395 58 3 0 chr15 96798099 96798390 -4582131 - AluY SINE Alu -19 292 1 2068 93 20 10 chr15 96799141 96799442 -4581079 + AluY SINE Alu 1 304 -7 187 296 153 10 chr15 96800320 96800418 -4580103 + L2 LINE L2 3136 3247 -25 2153 136 39 30 chr15 96800443 96800804 -4579717 + THE1B LTR MaLR 1 364 0 558 272 51 12 chr15 96801201 96801381 -4579140 + MIR SINE MIR 11 189 -63 454 283 93 68 chr15 96801906 96802273 -4578248 + L1ME4a LINE L1 5599 5974 -147 2186 126 3 0 chr15 96802333 96802635 -4577886 + AluSx SINE Alu 1 303 -9 377 286 37 73 chr15 96802637 96802882 -4577639 + MIR SINE MIR 27 262 0 2248 125 0 3 chr15 96803783 96804088 -4576433 + AluSq SINE Alu 1 304 -9 279 258 169 0 chr15 96804566 96804690 -4575831 + MIR SINE MIR 118 262 0 334 228 75 41 chr15 96804741 96804862 -4575659 - MLT1L LTR MaLR 0 597 389 445 264 55 83 chr15 96804890 96805132 -4575389 - MLT1L LTR MaLR -207 408 109 2338 109 3 0 chr15 96805273 96805577 -4574944 + AluSx SINE Alu 2 306 -6 347 250 46 19 chr15 96805698 96805806 -4574715 + MER5B DNA MER1_type 1 111 -67 306 0 0 0 chr15 96808636 96808670 -4571851 + (T)n Simple_repeat Simple_repeat 1 34 0 1349 188 23 0 chr15 96808704 96809012 -4571509 - L1PA2 LINE L1 0 6155 5841 306 0 0 0 chr15 96809586 96809620 -4570901 + (T)n Simple_repeat Simple_repeat 1 34 0 3382 23 18 0 chr15 96809653 96810048 -4570473 - L1PA2 LINE L1 0 6155 5754 3532 185 91 97 chr15 96810569 96811107 -4569414 - MER45B DNA AcHobo -541 1040 509 1897 162 7 19 chr15 96811107 96811416 -4569105 + AluJb SINE Alu 1 305 -7 3532 185 91 97 chr15 96811416 96811919 -4568602 - MER45B DNA AcHobo -1072 509 5 183 287 60 60 chr15 96812126 96812276 -4568245 - MIR SINE MIR -78 184 35 * 742 250 84 48 chr15 96812272 96812655 -4567866 + L2 LINE L2 2856 3313 0 2847 153 36 44 chr15 96812855 96813377 -4567144 + MLT2B1 LTR ERVL 3 520 0 245 313 68 44 chr15 96813729 96813978 -4566543 + Charlie8 DNA MER1_type 20 242 -2175 204 291 0 0 chr15 96815033 96815088 -4565433 + (TG)n Simple_repeat Simple_repeat 2 56 0 232 154 0 0 chr15 96815677 96815716 -4564805 + GA-rich Low_complexity Low_complexity 2 40 0 2375 101 7 0 chr15 96815716 96816024 -4564497 + AluSx SINE Alu 1 310 -2 329 117 17 0 chr15 96816024 96816084 -4564437 + GA-rich Low_complexity Low_complexity 1 61 0 256 339 0 28 chr15 96867634 96867743 -4512778 - MIR3 SINE MIR -10 198 93 1024 256 159 5 chr15 96867760 96868131 -4512390 + LTR16A LTR ERVL 18 445 -5 281 271 14 14 chr15 96868545 96868615 -4511906 + L2 LINE L2 3233 3302 -11 389 314 29 59 chr15 96868754 96868958 -4511563 + MLT1K LTR MaLR 198 395 -193 853 75 0 0 chr15 96869324 96869431 -4511090 - AluSg SINE Alu -167 143 37 213 273 36 0 chr15 96869799 96869854 -4510667 - L2 LINE L2 0 3313 3257 33 25 0 0 chr15 96870051 96870091 -4510430 + AT_rich Low_complexity Low_complexity 1 40 0 785 305 73 0 chr15 96870104 96870337 -4510184 + MIR SINE MIR 13 262 0 483 354 165 33 chr15 96870364 96870469 -4510052 - L1ME4a LINE L1 -68 6053 5963 1807 145 110 3 chr15 96870469 96870779 -4509742 - MER2 DNA MER2_type -1 343 1 483 354 165 33 chr15 96870779 96871195 -4509326 - L1ME4a LINE L1 -158 5963 5463 311 256 51 0 chr15 96871370 96871448 -4509073 + MIR SINE MIR 2 83 -179 1220 130 0 0 chr15 96871673 96871842 -4508679 - AluSx SINE Alu -143 169 1 1663 167 7 13 chr15 96872424 96872729 -4507792 - AluJb SINE Alu -9 303 1 2058 91 40 7 chr15 96873119 96873415 -4507106 - AluSg SINE Alu -4 306 1 246 260 110 71 chr15 96873618 96873745 -4506776 + MIR SINE MIR 81 212 -50 732 260 45 0 chr15 96874694 96874894 -4505627 + MER63A DNA MER1_type 2 210 0 314 258 65 0 chr15 96874960 96875053 -4505468 + L1ME3 LINE L1 5302 5400 -764 997 265 46 52 chr15 96875060 96875539 -4504982 + L1ME3 LINE L1 5465 5940 -222 325 285 49 41 chr15 96875698 96875821 -4504700 + L1MC4 LINE L1 7914 8037 -5 854 157 42 0 chr15 96875833 96875999 -4504522 - L1MC3 LINE L1 0 7785 7613 1365 103 0 42 chr15 96876005 96876218 -4504303 - AluSg/x SINE Alu -15 297 94 4745 166 49 15 chr15 96876221 96877135 -4503386 - L1MC3 LINE L1 -426 7359 6415 2111 112 0 0 chr15 96877146 96877440 -4503081 - AluSx SINE Alu -18 294 1 450 0 0 0 chr15 96877992 96878042 -4502479 + (TG)n Simple_repeat Simple_repeat 2 51 0 1848 56 22 0 chr15 96878263 96878494 -4502027 - AluY SINE Alu -75 236 1 815 173 0 7 chr15 96878511 96878650 -4501871 - FLAM_C SINE Alu 0 143 6 1898 106 55 4 chr15 96879503 96879801 -4500720 + AluSx SINE Alu 1 312 0 338 252 31 63 chr15 96879823 96879950 -4500571 - LTR67 LTR ERVL -7 550 428 409 221 15 157 chr15 96880192 96880396 -4500125 - MER5A DNA MER1_type -14 175 1 249 253 165 44 chr15 96880428 96880519 -4500002 - MIR SINE MIR -146 116 15 281 150 61 143 chr15 96880581 96880626 -4499895 + MER113 DNA MER1_type? 79 126 -395 1650 153 13 51 chr15 96880626 96880940 -4499581 + AluJo SINE Alu 1 302 -10 2289 54 0 17 chr15 96880942 96881258 -4499263 + AluY SINE Alu 1 311 0 281 150 61 143 chr15 96881258 96881356 -4499165 + MER113 DNA MER1_type? 127 213 -308 388 191 15 0 chr15 96881362 96881430 -4499091 + FRAM/FAM SINE Alu 1 68 -98 33 46 0 15 chr15 96882366 96882378 -4498143 + AT_rich Low_complexity Low_complexity 1 12 -52 1969 134 0 7 chr15 96882378 96882668 -4497853 - AluSx SINE Alu -24 288 1 33 46 0 15 chr15 96882668 96882720 -4497801 + AT_rich Low_complexity Low_complexity 12 64 0 270 225 0 0 chr15 96883343 96883414 -4497107 + GA-rich Low_complexity Low_complexity 1 71 0 546 93 0 0 chr15 96884472 96884558 -4495963 + (TA)n Simple_repeat Simple_repeat 2 87 0 716 58 0 0 chr15 96884558 96884644 -4495877 - AluSg/x SINE Alu -16 294 209 196 339 0 0 chr15 96884685 96884750 -4495771 - MIR SINE MIR -50 212 148 2412 41 14 0 chr15 96884754 96885049 -4495472 - AluY SINE Alu -12 299 1 1450 153 52 52 chr15 96885653 96885826 -4494695 - AluJo SINE Alu -24 288 113 2175 141 19 21 chr15 96885826 96886202 -4494319 - THE1C LTR MaLR 0 375 1 1450 153 52 52 chr15 96886202 96886316 -4494205 - AluJo SINE Alu -198 114 1 293 256 29 80 chr15 96886389 96886526 -4493995 + L1ME LINE L1 5550 5679 -442 574 123 0 0 chr15 96886588 96886669 -4493852 - AluJ/FRAM SINE Alu -14 298 218 1842 112 4 11 chr15 96886770 96887047 -4493474 - AluSx SINE Alu -37 275 1 252 235 0 0 chr15 96887047 96887098 -4493423 + L1MB7 LINE L1 5232 5282 -864 1846 146 0 0 chr15 96887122 96887402 -4493119 - AluJb SINE Alu -31 281 2 4691 164 9 45 chr15 96887402 96887536 -4492985 + L1MB7 LINE L1 5273 5410 -774 2247 119 6 26 chr15 96887536 96887880 -4492641 + MER1B DNA MER1_type 1 337 0 4691 164 9 45 chr15 96887880 96888154 -4492367 + L1MB7 LINE L1 5410 5692 -492 2164 126 0 0 chr15 96888154 96888464 -4492057 + AluSx SINE Alu 1 310 -2 4691 164 9 45 chr15 96888464 96888864 -4491657 + L1MB7 LINE L1 5692 6046 -138 1815 149 0 52 chr15 96888864 96889193 -4491328 + AluJo SINE Alu 1 312 0 4691 164 9 45 chr15 96889193 96889312 -4491209 + L1MB7 LINE L1 6046 6168 -16 2071 86 65 0 chr15 96890379 96890669 -4489852 - AluSc SINE Alu 0 309 1 1649 128 4 0 chr15 96891228 96891471 -4489050 + AluSg SINE Alu 1 244 -66 200 301 41 41 chr15 96892095 96892168 -4488353 + L2 LINE L2 3236 3308 -5 213 296 0 19 chr15 96892327 96892381 -4488140 - MIR3 SINE MIR -32 176 124 260 261 87 9 chr15 96892530 96892644 -4487877 + MIR SINE MIR 33 161 -65 2036 128 0 0 chr15 96892858 96893170 -4487351 - AluSx SINE Alu 0 312 1 1755 157 10 0 chr15 96893170 96893468 -4487053 - AluJb SINE Alu -10 302 1 218 196 0 0 chr15 96893904 96893950 -4486571 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 393 288 75 14 chr15 96893997 96894143 -4486378 - L2 LINE L2 0 3313 3159 2028 124 0 0 chr15 96894328 96894619 -4485902 - AluSx SINE Alu -21 291 1 488 210 45 51 chr15 96895152 96895328 -4485193 + MER5B DNA MER1_type 1 175 -3 284 208 0 89 chr15 96895583 96895684 -4484837 + L1ME3A LINE L1 6061 6152 -18 2240 86 0 7 chr15 96895694 96895997 -4484524 - AluSx SINE Alu -11 301 1 396 0 0 0 chr15 96896018 96896062 -4484459 + (CA)n Simple_repeat Simple_repeat 1 44 0 343 339 8 17 chr15 96896074 96896192 -4484329 + HAL1b LINE L1 1232 1348 0 349 103 29 0 chr15 96896714 96896782 -4483739 + (TG)n Simple_repeat Simple_repeat 2 71 0 2082 114 7 0 chr15 96898523 96898820 -4481701 - AluSq SINE Alu -14 299 1 270 280 160 10 chr15 96898902 96899002 -4481519 + MIR SINE MIR 25 139 -123 1469 184 0 59 chr15 96899160 96899480 -4481041 + AluJb SINE Alu 1 301 -11 198 0 0 0 chr15 96900418 96900440 -4480081 + (GGA)n Simple_repeat Simple_repeat 2 23 0 1878 131 0 0 chr15 96900633 96900907 -4479614 + AluSx SINE Alu 1 274 -38 21 0 0 0 chr15 96901388 96901409 -4479112 + AT_rich Low_complexity Low_complexity 1 21 0 682 150 108 0 chr15 96901414 96901534 -4478987 + FLAM_A SINE Alu 1 133 0 2279 73 0 10 chr15 96901568 96901871 -4478650 - AluY SINE Alu -11 300 1 267 255 137 19 chr15 96902127 96902288 -4478233 + L1MC4a LINE L1 5854 6033 -1775 1478 163 10 27 chr15 96902441 96902757 -4477764 + AluJo SINE Alu 11 312 0 2027 120 7 3 chr15 96903096 96903405 -4477116 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr15 96903405 96903434 -4477087 + AT_rich Low_complexity Low_complexity 1 29 0 784 193 118 0 chr15 96903770 96903957 -4476564 + L1MB7 LINE L1 5957 6165 -19 1638 158 16 42 chr15 96903981 96904292 -4476229 + AluJo SINE Alu 3 305 -7 2475 195 98 42 chr15 96904440 96905121 -4475400 + MER97b DNA MER1_type? 59 789 -264 2100 92 0 4 chr15 96905121 96905432 -4475089 + AluY SINE Alu 1 310 0 2475 195 98 42 chr15 96905432 96905508 -4475013 + MER97b DNA MER1_type? 789 859 -194 284 315 185 20 chr15 96906024 96906170 -4474351 - MIR SINE MIR -91 171 2 302 330 71 42 chr15 96906416 96906481 -4474040 + L2 LINE L2 2899 2961 -352 2143 120 0 0 chr15 96906481 96906790 -4473731 - AluSg SINE Alu -1 309 1 302 330 71 42 chr15 96906790 96906963 -4473558 + L2 LINE L2 2961 3144 -169 1064 144 0 6 chr15 96907262 96907442 -4473079 - AluSg/x SINE Alu 0 312 134 2258 73 7 0 chr15 96907442 96907742 -4472779 - AluY SINE Alu -9 302 1 1663 170 33 0 chr15 96907790 96908090 -4472431 - AluSx SINE Alu -2 310 1 2170 119 3 0 chr15 96909542 96909845 -4470676 + AluSx SINE Alu 1 304 -8 2339 84 0 7 chr15 96909889 96910197 -4470324 + AluSq SINE Alu 1 306 -7 1619 196 0 0 chr15 96910244 96910540 -4469981 + AluJo SINE Alu 1 296 -16 201 39 0 0 chr15 96911330 96911356 -4469165 + (TC)n Simple_repeat Simple_repeat 1 26 0 1937 142 0 13 chr15 96911419 96911728 -4468793 + AluSx SINE Alu 1 305 -7 2493 196 69 9 chr15 96911803 96912370 -4468151 + L1MD2 LINE L1 5757 6357 -2 2060 134 7 0 chr15 96912495 96912802 -4467719 + AluSx SINE Alu 1 309 -3 1599 168 3 30 chr15 96913114 96913418 -4467103 - AluJo SINE Alu -16 296 1 815 57 9 0 chr15 96915004 96915109 -4465412 + AluSg SINE Alu 1 106 -204 12626 181 18 41 chr15 96915209 96917945 -4462576 - L1M2c LINE L1 -4470 2698 5 335 251 31 117 chr15 96917975 96918033 -4462488 - MIR SINE MIR -105 157 96 2337 96 0 0 chr15 96918033 96918345 -4462176 + AluSx SINE Alu 1 312 0 335 251 31 117 chr15 96918345 96918449 -4462072 - MIR SINE MIR -166 96 9 1627 141 10 53 chr15 96918619 96918918 -4461603 + L1MC1 LINE L1 6047 6332 -1 2290 79 3 3 chr15 96919132 96919436 -4461085 + AluSp SINE Alu 1 304 -9 2110 140 66 46 chr15 96922569 96922961 -4457560 - LTR12 LTR ERV1 -314 400 1 284 294 24 0 chr15 96925361 96925446 -4455075 - MER5A DNA MER1_type -37 152 66 829 174 58 0 chr15 96925446 96925601 -4454920 - AluJb SINE Alu -12 300 137 248 122 24 0 chr15 96925604 96925645 -4454876 - MER5A DNA MER1_type -115 74 33 6793 129 221 32 chr15 96925775 96927214 -4453307 + pTR5 LTR ERV1 728 2438 0 201 339 96 0 chr15 96927519 96927634 -4452887 + MIR SINE MIR 88 213 -49 2032 96 3 7 chr15 96927994 96928286 -4452235 - AluSx SINE Alu -21 291 1 198 292 56 0 chr15 96928379 96928451 -4452070 + L3 LINE CR1 196 271 -1306 340 335 73 52 chr15 96929695 96929982 -4450539 - L2 LINE L2 0 3272 2980 1911 128 28 10 chr15 96930010 96930131 -4450390 + AluSx SINE Alu 1 118 -194 459 0 0 0 chr15 96930131 96930182 -4450339 + (CA)n Simple_repeat Simple_repeat 2 52 0 1911 128 28 10 chr15 96930182 96930349 -4450172 + AluSx SINE Alu 118 294 -18 898 266 124 36 chr15 96930367 96930834 -4449687 - MLT1J LTR MaLR 0 511 4 246 335 53 39 chr15 96931060 96931266 -4449255 - L2 LINE L2 -649 2665 2457 615 248 35 0 chr15 96931373 96931514 -4449007 + MIR SINE MIR 117 262 0 1604 134 34 19 chr15 96931831 96932099 -4448422 - L1PA10 LINE L1 0 6168 5897 281 262 0 0 chr15 96932339 96932400 -4448121 - MER94 DNA DNA -2 132 72 391 224 64 45 chr15 96934124 96934280 -4446241 - MER114 LTR ERV 0 648 490 3369 160 14 72 chr15 96934291 96934347 -4446174 + L1MB5 LINE L1 5456 5514 -660 1848 121 44 0 chr15 96934347 96934619 -4445902 + AluSx SINE Alu 12 295 -17 3369 160 14 72 chr15 96934619 96935096 -4445425 + L1MB5 LINE L1 5514 5940 -234 2062 116 7 0 chr15 96935096 96935388 -4445133 + AluSx SINE Alu 1 294 -18 3369 160 14 72 chr15 96935388 96935565 -4444956 + L1MB5 LINE L1 5940 6126 -48 884 201 161 45 chr15 96935570 96935993 -4444528 - MER114 LTR ERV -111 537 66 398 205 0 0 chr15 96936001 96936084 -4444437 - AluJ/FRAM SINE Alu -1 301 219 261 185 92 15 chr15 96936085 96936150 -4444371 - MER114 LTR ERV -578 70 1 1058 117 18 0 chr15 96936325 96936488 -4444033 - AluY SINE Alu -12 299 134 21 71 0 0 chr15 96936557 96936599 -4443922 + AT_rich Low_complexity Low_complexity 1 42 0 1913 131 0 33 chr15 96936631 96936937 -4443584 + AluSx SINE Alu 1 296 -16 200 111 28 0 chr15 96936940 96936976 -4443545 + (TA)n Simple_repeat Simple_repeat 2 38 0 274 246 16 0 chr15 96937029 96937090 -4443431 - MER94 DNA DNA -72 62 1 803 253 66 57 chr15 96937442 96937622 -4442899 + L1MC4 LINE L1 6764 6941 -1101 1839 113 24 10 chr15 96937622 96937913 -4442608 - AluSx SINE Alu -17 295 1 803 253 66 57 chr15 96937913 96938161 -4442360 + L1MC4 LINE L1 6941 7281 -761 313 242 0 0 chr15 96938186 96938248 -4442273 + AluJ/FLAM SINE Alu 1 62 -240 2102 121 0 0 chr15 96938276 96938573 -4441948 - AluSx SINE Alu -15 297 1 536 254 25 16 chr15 96938743 96938865 -4441656 + L2 LINE L2 3137 3259 -13 186 103 0 0 chr15 96938865 96938894 -4441627 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 1992 139 3 0 chr15 96939480 96939783 -4440738 - AluSx SINE Alu -8 304 1 192 152 0 0 chr15 96939815 96939848 -4440673 + CT-rich Low_complexity Low_complexity 2 34 0 1314 128 5 5 chr15 96940404 96940600 -4439921 - AluSx SINE Alu -116 196 1 1487 188 38 3 chr15 96940686 96940866 -4439655 - AluJo SINE Alu -3 309 114 204 40 0 0 chr15 96940866 96940891 -4439630 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1487 188 38 3 chr15 96940891 96940997 -4439524 - AluJo SINE Alu -198 114 13 2281 96 0 3 chr15 96941523 96941835 -4438686 + AluSx SINE Alu 1 311 -1 477 315 139 9 chr15 96941976 96942192 -4438329 - MIR SINE MIR 0 262 19 1754 140 0 27 chr15 96942272 96942591 -4437930 + AluJb SINE Alu 1 311 0 420 214 21 100 chr15 96944944 96945084 -4435437 + L2 LINE L2 3139 3267 -5 213 213 0 0 chr15 96945128 96945175 -4435346 + GA-rich Low_complexity Low_complexity 4 50 0 2051 133 0 0 chr15 96945334 96945642 -4434879 - AluSg SINE Alu -2 308 1 594 176 78 56 chr15 96945642 96945784 -4434737 - MIR SINE MIR -84 178 34 201 239 0 0 chr15 96946850 96946896 -4433625 + CT-rich Low_complexity Low_complexity 2 47 0 365 127 0 14 chr15 96946913 96946984 -4433537 + (CA)n Simple_repeat Simple_repeat 2 71 0 872 129 0 0 chr15 96947643 96947775 -4432746 - AluSq/x SINE Alu -181 132 1 1911 85 93 4 chr15 96950559 96950817 -4429704 + AluSc SINE Alu 17 297 -12 296 277 168 37 chr15 96950860 96951057 -4429464 - MIR3 SINE MIR -48 214 2 2974 123 35 14 chr15 96951136 96951624 -4428897 + L1MB3 LINE L1 5683 6180 -3 2417 87 0 3 chr15 96951628 96951928 -4428593 + AluSq SINE Alu 1 299 -14 2272 99 3 3 chr15 96951930 96952224 -4428297 + AluSc SINE Alu 1 294 -15 3895 171 39 52 chr15 96952344 96953080 -4427441 - L1MB3 LINE L1 -14 6169 5444 1854 124 60 3 chr15 96953080 96953363 -4427158 - AluSx SINE Alu -13 299 1 3895 171 39 52 chr15 96953363 96953472 -4427049 - L1MB3 LINE L1 -739 5444 5335 484 114 0 5 chr15 96953472 96953649 -4426872 + AluSx SINE Alu 1 272 -38 622 139 21 21 chr15 96953652 96953796 -4426725 + GA-rich Low_complexity Low_complexity 2 145 0 330 26 0 0 chr15 96953894 96953933 -4426588 + (TG)n Simple_repeat Simple_repeat 1 39 0 827 264 25 67 chr15 96954743 96955092 -4425429 + L1MEd LINE L1 1001 1363 -4766 2331 104 0 0 chr15 96955092 96955389 -4425132 + AluSx SINE Alu 1 297 -15 827 264 25 67 chr15 96955389 96955432 -4425089 + L1MEd LINE L1 1363 1406 -4723 2088 131 0 10 chr15 96955432 96955744 -4424777 + AluSx SINE Alu 1 309 -3 827 264 25 67 chr15 96955744 96955993 -4424528 + L1MEd LINE L1 1406 1993 -4136 2379 69 10 3 chr15 96955994 96956284 -4424237 + AluY SINE Alu 1 292 -19 3032 195 17 17 chr15 96956307 96956938 -4423583 + L1PA13 LINE L1 1297 1927 -4860 1962 131 10 22 chr15 96956940 96957235 -4423286 + AluJb SINE Alu 1 293 -19 865 52 0 45 chr15 96957235 96957389 -4423132 + (GGGAA)n Simple_repeat Simple_repeat 3 149 0 1962 131 10 22 chr15 96957389 96957407 -4423114 + AluJb SINE Alu 293 310 -2 522 275 82 29 chr15 96959635 96960150 -4420371 + L1M4 LINE L1 4817 5303 -863 2091 119 31 3 chr15 96960150 96960436 -4420085 - AluSq SINE Alu -19 294 1 1462 143 0 9 chr15 96960438 96960662 -4419859 - AluJo SINE Alu -10 302 81 522 275 82 29 chr15 96960662 96960682 -4419839 + L1M4 LINE L1 5303 5392 -774 29 0 0 0 chr15 96960929 96960958 -4419563 + AT_rich Low_complexity Low_complexity 1 29 0 1076 75 8 0 chr15 96960958 96961091 -4419430 - AluSp SINE Alu -179 134 1 707 280 151 25 chr15 96961999 96962886 -4417635 - L2 LINE L2 0 3313 2324 1958 132 6 22 chr15 96963379 96963690 -4416831 - AluJo SINE Alu -6 306 1 363 214 21 13 chr15 96963741 96963843 -4416678 - MIR SINE MIR -93 115 15 2310 84 40 0 chr15 96963997 96964296 -4416225 - AluY SINE Alu 0 311 1 484 257 7 34 chr15 96964971 96965119 -4415402 + MER117 DNA MER1_type 7 150 -47 1595 164 49 7 chr15 96965709 96965995 -4414526 - AluJb SINE Alu -14 298 1 1085 212 249 24 chr15 96965998 96966408 -4414113 - MLT1D LTR MaLR -3 502 1 1730 90 5 0 chr15 96966621 96966843 -4413678 - AluSq SINE Alu -19 294 72 2410 92 7 0 chr15 96968015 96968321 -4412200 - AluSg SINE Alu -2 308 1 444 318 15 20 chr15 96968692 96968887 -4411634 + MIR SINE MIR 2 195 -67 338 360 25 0 chr15 96968959 96969120 -4411401 + MIR SINE MIR 57 221 -41 2119 101 24 7 chr15 96969527 96969814 -4410707 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr15 96971851 96971872 -4408649 + AT_rich Low_complexity Low_complexity 1 21 0 2903 46 0 0 chr15 96972386 96972733 -4407788 - L1PA5 LINE L1 0 6154 5808 287 363 61 11 chr15 96973041 96973325 -4407196 + L3 LINE CR1 246 511 -1066 1474 205 34 24 chr15 96973419 96973712 -4406809 + AluJo SINE Alu 1 296 -16 4805 152 31 24 chr15 96973830 96973953 -4406568 + L1MB7 LINE L1 5043 5164 -1020 2856 64 13 11 chr15 96973953 96974329 -4406192 + L1PA5 LINE L1 5776 6152 -2 4805 152 31 24 chr15 96974329 96975331 -4405190 + L1MB7 LINE L1 5164 6178 -6 281 267 50 20 chr15 96975340 96975441 -4405080 + L3 LINE CR1 811 914 -663 254 211 278 0 chr15 96975610 96975700 -4404821 - MER5A DNA MER1_type -14 175 61 294 95 0 0 chr15 96975706 96975748 -4404773 + (TCCCC)n Simple_repeat Simple_repeat 5 46 0 2367 80 0 7 chr15 96975753 96976053 -4404468 - AluSq SINE Alu -15 298 1 183 213 49 16 chr15 96976053 96976114 -4404407 - MER5A DNA MER1_type -113 76 14 272 288 25 8 chr15 96976129 96976247 -4404274 - MIR SINE MIR -133 129 10 232 211 35 0 chr15 96976504 96976561 -4403960 + L3 LINE CR1 1373 1431 -146 327 229 240 44 chr15 96976645 96976828 -4403693 + MER113 DNA MER1_type? 154 372 -149 180 267 70 70 chr15 96976973 96977059 -4403462 - L3 LINE CR1 -357 1220 1135 251 163 41 0 chr15 96977278 96977327 -4403194 + L3 LINE CR1 1342 1392 -185 2328 86 27 0 chr15 96977344 96977636 -4402885 + AluSx SINE Alu 1 300 -12 527 262 71 22 chr15 96977904 96978087 -4402434 - MIR SINE MIR -67 195 4 1180 130 10 48 chr15 96979896 96980104 -4400417 - THE1A LTR MaLR -1 354 155 2175 108 13 13 chr15 96980104 96980411 -4400110 + AluSx SINE Alu 1 307 -5 1970 150 3 13 chr15 96980411 96980724 -4399797 + AluSx SINE Alu 1 310 -2 2038 103 0 47 chr15 96981031 96981331 -4399190 + AluSq SINE Alu 1 286 -27 1857 169 20 0 chr15 96981545 96981847 -4398674 + AluJb SINE Alu 5 312 0 685 88 39 0 chr15 96981913 96982015 -4398506 - AluY SINE Alu -12 299 194 2345 100 0 3 chr15 96982434 96982745 -4397776 - AluSg SINE Alu 0 310 1 2343 83 0 29 chr15 96982811 96983124 -4397397 - AluSq SINE Alu -9 304 1 231 259 37 49 chr15 96984039 96984120 -4396401 - MIR3 SINE MIR -10 198 119 664 205 32 6 chr15 96984140 96984296 -4396225 - MIR SINE MIR -67 195 36 625 120 10 10 chr15 96984575 96984675 -4395846 + MLT1D LTR MaLR 404 503 -2 2126 130 3 0 chr15 96984697 96984996 -4395525 + AluJb SINE Alu 1 300 -12 346 301 18 9 chr15 96984999 96985112 -4395409 + L2 LINE L2 3197 3310 -3 239 200 20 0 chr15 96985127 96985177 -4395344 + MER103 DNA DNA 109 159 -7 2634 33 0 0 chr15 96985924 96986225 -4394296 - AluY SINE Alu -10 301 1 338 0 24 0 chr15 96986423 96986465 -4394056 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 2073 97 0 0 chr15 96986466 96986745 -4393776 - AluSx SINE Alu -33 279 1 21 36 0 0 chr15 96989626 96989654 -4390867 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr15 96990544 96990573 -4389948 + AT_rich Low_complexity Low_complexity 1 29 0 346 311 114 42 chr15 96990673 96991104 -4389417 + L1MC/D LINE L1 4233 4694 -1452 345 349 63 15 chr15 96991811 96992080 -4388441 + L1MC/D LINE L1 5443 5724 -2084 306 73 0 0 chr15 96992898 96992939 -4387582 + (TG)n Simple_repeat Simple_repeat 1 41 0 1883 116 20 20 chr15 96993626 96993920 -4386601 + AluSx SINE Alu 1 294 -18 180 288 38 25 chr15 96994520 96994600 -4385921 - L2 LINE L2 -289 2983 2903 489 255 113 34 chr15 96994853 96995161 -4385360 + L1MC/D LINE L1 5474 5802 -340 456 19 0 0 chr15 96995215 96995268 -4385253 + (TG)n Simple_repeat Simple_repeat 2 54 0 3026 163 24 10 chr15 96995451 96996034 -4384487 - L1MB4 LINE L1 -2 6178 5588 189 0 0 0 chr15 96996956 96996977 -4383544 + (A)n Simple_repeat Simple_repeat 1 21 0 890 289 17 50 chr15 96997092 96997508 -4383013 + L1MC4a LINE L1 5258 5659 -503 2274 114 0 0 chr15 96997850 96998157 -4382364 - AluSx SINE Alu -5 307 1 2241 84 24 0 chr15 96998331 96998628 -4381893 - AluSg SINE Alu -6 304 1 385 263 52 52 chr15 96998774 96998987 -4381534 + L1MC4a LINE L1 5690 5902 -1906 2196 87 17 0 chr15 96999144 96999433 -4381088 - AluSc SINE Alu -15 294 1 187 308 110 11 chr15 96999589 96999680 -4380841 - L2 LINE L2 -1 3271 3172 1865 176 0 0 chr15 96999956 97000251 -4380270 - AluSq SINE Alu -18 295 1 191 275 74 26 chr15 97000454 97000595 -4379926 + MIR SINE MIR 102 256 -6 249 77 0 0 chr15 97000624 97000663 -4379858 + Alu SINE Alu 259 297 -2 35 24 0 0 chr15 97000748 97000790 -4379731 + AT_rich Low_complexity Low_complexity 1 42 0 774 159 0 64 chr15 97001229 97001386 -4379135 + AluJb SINE Alu 137 283 -29 * 819 211 0 0 chr15 97001371 97001532 -4378989 + AluJo SINE Alu 5 165 -147 285 186 200 0 chr15 97001881 97001951 -4378570 - MIR SINE MIR -64 144 61 2530 185 50 31 chr15 97002947 97003524 -4376997 - L1ME2 LINE L1 -3 6161 5574 24 0 0 0 chr15 97004009 97004033 -4376488 + AT_rich Low_complexity Low_complexity 1 24 0 305 275 76 23 chr15 97004060 97004231 -4376290 - L1ME3A LINE L1 -221 5949 5770 22 70 0 0 chr15 97005154 97005197 -4375324 + AT_rich Low_complexity Low_complexity 1 43 0 31 102 0 0 chr15 97006301 97006409 -4374112 + GC_rich Low_complexity Low_complexity 1 108 0 186 118 0 0 chr15 97006763 97006797 -4373724 + (TCCCC)n Simple_repeat Simple_repeat 5 38 0 23 54 0 0 chr15 97007066 97007103 -4373418 + GC_rich Low_complexity Low_complexity 1 37 0 183 170 0 0 chr15 97007129 97007176 -4373345 + (CG)n Simple_repeat Simple_repeat 2 48 0 278 175 0 62 chr15 97007490 97007587 -4372934 + (CGGGG)n Simple_repeat Simple_repeat 2 92 0 213 39 0 0 chr15 97007675 97007701 -4372820 + (GGA)n Simple_repeat Simple_repeat 3 28 0 38 51 0 0 chr15 97008017 97008076 -4372445 + GC_rich Low_complexity Low_complexity 1 59 0 266 106 21 0 chr15 97008140 97008187 -4372334 + (TTTTC)n Simple_repeat Simple_repeat 2 49 0 1888 160 9 3 chr15 97011256 97011587 -4368934 + L1MB7 LINE L1 5847 6179 -5 22 0 0 0 chr15 97014284 97014306 -4366215 + AT_rich Low_complexity Low_complexity 1 22 0 1398 164 109 4 chr15 97014363 97014638 -4365883 - AluJb SINE Alu -8 304 1 1878 138 3 0 chr15 97014913 97015204 -4365317 + AluSx SINE Alu 1 292 -20 691 282 67 0 chr15 97017465 97017660 -4362861 + MIR SINE MIR 28 235 -27 198 121 91 0 chr15 97017783 97017816 -4362705 + MIR SINE MIR 216 251 -11 243 361 110 28 chr15 97018801 97019156 -4361365 + L2 LINE L2 2871 3254 -18 200 340 155 10 chr15 97019967 97020070 -4360451 + L3 LINE CR1 1434 1551 -26 267 298 92 23 chr15 97020353 97020484 -4360037 + MIR SINE MIR 111 250 -12 967 250 9 59 chr15 97020617 97020937 -4359584 - AluSq SINE Alu 0 313 10 181 341 101 31 chr15 97021460 97021589 -4358932 + MIR SINE MIR 111 248 -14 1870 122 6 55 chr15 97021724 97022052 -4358469 - AluSx SINE Alu 0 312 1 367 252 15 89 chr15 97024086 97024154 -4356367 + MIR SINE MIR 93 148 -114 2129 77 6 86 chr15 97024154 97024481 -4356040 + AluSx SINE Alu 1 301 -11 367 252 15 89 chr15 97024481 97024547 -4355974 + MIR SINE MIR 148 217 -45 2193 66 24 0 chr15 97024732 97025020 -4355501 - AluY SINE Alu -15 296 2 4306 167 12 32 chr15 97025868 97026699 -4353822 + L1MB3 LINE L1 5370 6183 0 1523 204 38 35 chr15 97027730 97028103 -4352418 - MLT1A2 LTR MaLR 0 374 1 2139 101 0 16 chr15 97032053 97032361 -4348160 + AluSx SINE Alu 1 303 -9 785 225 25 19 chr15 97032765 97032925 -4347596 - FRAM SINE Alu -1 165 5 210 222 16 79 chr15 97033541 97033604 -4346917 - L2 LINE L2 -5 3267 3209 271 281 229 0 chr15 97034042 97034138 -4346383 + L2 LINE L2 3154 3271 -1 869 302 129 44 chr15 97034423 97034748 -4345773 - L1ME4a LINE L1 -2 6119 5823 2144 119 0 16 chr15 97034748 97035060 -4345461 - AluSx SINE Alu -5 307 1 869 302 129 44 chr15 97035060 97035452 -4345069 - L1ME4a LINE L1 -298 5823 5347 1929 131 6 13 chr15 97035587 97035901 -4344620 - AluSx SINE Alu 0 312 1 2061 99 11 3 chr15 97035923 97036207 -4344314 - AluSg SINE Alu -24 286 1 418 307 83 45 chr15 97036610 97036709 -4343812 - L1ME4a LINE L1 -1662 4484 4390 1711 167 3 7 chr15 97036709 97037008 -4343513 - AluJo SINE Alu -14 298 1 418 307 83 45 chr15 97037008 97037221 -4343300 - L1ME4a LINE L1 -1756 4390 4160 336 277 101 65 chr15 97037232 97037510 -4343011 - MLT1J LTR MaLR 0 511 224 562 354 69 15 chr15 97037850 97038240 -4342281 - L1ME4a LINE L1 -2193 3953 3543 1259 169 0 46 chr15 97038334 97038595 -4341926 - AluJb SINE Alu -62 250 2 1464 158 68 4 chr15 97038693 97038971 -4341550 - AluJo SINE Alu -10 302 7 489 246 108 8 chr15 97039188 97039318 -4341203 + Tigger3(Golem) DNA MER2_type 3 145 -2884 2716 119 36 71 chr15 97039418 97039614 -4340907 + Tigger3(Golem) DNA MER2_type 2543 2744 -285 2355 61 0 3 chr15 97039614 97039910 -4340611 - AluY SINE Alu -16 295 1 1467 164 28 28 chr15 97039910 97040196 -4340325 - AluJo SINE Alu -13 299 14 2716 119 36 71 chr15 97040196 97040502 -4340019 + Tigger3(Golem) DNA MER2_type 2742 3028 -1 2079 114 7 0 chr15 97041900 97042190 -4338331 - AluSx SINE Alu -20 292 1 279 244 55 94 chr15 97044072 97044199 -4336322 + MIR3 SINE MIR 3 124 -84 1844 153 0 16 chr15 97044275 97044589 -4335932 - AluJb SINE Alu -3 309 1 3627 130 56 70 chr15 97045258 97045975 -4334546 - L1MB3 LINE L1 -52 6131 5425 1409 221 3 0 chr15 97046015 97046314 -4334207 - AluJo SINE Alu -12 300 1 323 244 73 57 chr15 97046460 97046583 -4333938 - L2 LINE L2 -2 3270 3146 233 346 58 35 chr15 97046794 97047051 -4333470 - L2 LINE L2 -468 2846 2584 399 284 0 34 chr15 97047589 97047737 -4332784 + CT-rich Low_complexity Low_complexity 2 144 0 342 0 0 0 chr15 97047759 97047797 -4332724 + (TG)n Simple_repeat Simple_repeat 1 38 0 250 290 45 74 chr15 97047913 97048067 -4332454 + MIR SINE MIR 39 143 -65 1883 134 48 0 chr15 97048579 97048871 -4331650 - AluSx SINE Alu -6 306 1 1822 152 10 7 chr15 97049404 97049701 -4330820 + AluJo SINE Alu 1 298 -14 2089 215 51 40 chr15 97050298 97050703 -4329818 - L1MD3 LINE L1 0 7995 7581 2163 109 7 0 chr15 97050703 97051007 -4329514 - AluSx SINE Alu -6 306 1 2089 215 51 40 chr15 97051007 97051150 -4329371 - L1MD3 LINE L1 -414 7581 7441 1993 135 0 0 chr15 97052371 97052668 -4327853 - AluSx SINE Alu -15 297 1 281 322 2 30 chr15 97054248 97054368 -4326153 + MIR SINE MIR 39 154 -67 229 325 89 51 chr15 97054433 97054590 -4325931 - L3b LINE CR1 -141 1442 1280 1072 246 186 38 chr15 97054801 97055280 -4325241 - L3 LINE CR1 -606 971 422 1461 154 68 71 chr15 97056460 97056506 -4324015 - L1MB2 LINE L1 -4 6167 6122 1939 121 10 0 chr15 97056506 97056796 -4323725 - AluSx SINE Alu -19 293 1 2212 85 0 0 chr15 97056800 97057094 -4323427 - AluSg SINE Alu -12 298 5 1461 154 68 71 chr15 97057094 97057393 -4323128 - L1MB2 LINE L1 -52 6119 5818 478 219 301 14 chr15 97059210 97059356 -4321165 + MER5A DNA MER1_type 1 188 -1 2354 67 3 13 chr15 97060087 97060400 -4320121 - AluY SINE Alu -1 310 1 279 331 58 16 chr15 97060649 97060770 -4319751 - MIR SINE MIR -69 193 68 189 0 0 0 chr15 97060795 97060816 -4319705 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr15 97061089 97061111 -4319410 + AT_rich Low_complexity Low_complexity 1 22 0 1461 173 83 7 chr15 97061111 97061389 -4319132 - AluSx SINE Alu -13 299 1 1421 174 36 26 chr15 97061419 97061723 -4318798 + AluJo SINE Alu 1 307 -5 1616 176 15 4 chr15 97062654 97062926 -4317595 + Tigger4(Zombi) DNA MER2_type 1 275 -2456 361 109 47 0 chr15 97062917 97062981 -4317540 + Tigger4(Zombi) DNA MER2_type 2494 2560 -171 * 239 321 0 0 chr15 97063391 97063444 -4317077 - L2 LINE L2 -28 3244 3192 322 270 247 48 chr15 97063586 97064027 -4316494 - L2 LINE L2 -751 2563 2035 299 326 21 14 chr15 97064039 97064183 -4316338 - L2 LINE L2 -1410 1904 1760 250 279 33 0 chr15 97064196 97064257 -4316264 + MIR SINE MIR 82 144 -118 746 229 114 50 chr15 97065155 97065476 -4315045 + L1ME4a LINE L1 5551 5896 -225 529 323 191 32 chr15 97065747 97066899 -4313622 + L2 LINE L2 1518 2852 -462 225 0 0 0 chr15 97067403 97067428 -4313093 + (T)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr15 97068809 97068832 -4311689 + AT_rich Low_complexity Low_complexity 1 23 0 1723 114 37 0 chr15 97068930 97069176 -4311345 + AluSq SINE Alu 1 255 -58 302 304 134 25 chr15 97070113 97070314 -4310207 + MIR SINE MIR 34 256 -6 243 268 73 37 chr15 97071381 97071463 -4309058 + MIR SINE MIR 34 118 -90 379 236 116 99 chr15 97071487 97071729 -4308792 + MER112 DNA MER1_type 3 248 -12 208 311 25 33 chr15 97073364 97073486 -4307035 - MIR SINE MIR -79 183 63 1233 273 178 16 chr15 97073760 97074327 -4306194 + L1MC4a LINE L1 5468 6126 -1682 2012 83 33 4 chr15 97075204 97075506 -4305015 - AluSq SINE Alu 0 314 5 1586 156 0 28 chr15 97076199 97076488 -4304033 - AluJo SINE Alu -23 289 9 317 312 156 7 chr15 97078378 97078519 -4302002 - MIR3 SINE MIR -27 181 20 710 184 0 0 chr15 97078564 97078689 -4301832 + FLAM_C SINE Alu 2 126 -7 1876 138 6 13 chr15 97078801 97079112 -4301409 - AluJb SINE Alu -3 309 1 1022 210 11 48 chr15 97079227 97079499 -4301022 - AluJo SINE Alu -19 293 32 605 283 52 22 chr15 97079508 97079777 -4300744 - L1ME LINE L1 -303 5818 5542 2215 63 13 17 chr15 97080423 97080724 -4299797 + AluY SINE Alu 1 300 -11 200 204 19 56 chr15 97082086 97082140 -4298381 + CT-rich Low_complexity Low_complexity 4 55 0 378 194 65 21 chr15 97083952 97084045 -4296476 + MIR SINE MIR 92 188 -74 1439 152 36 40 chr15 97084367 97084611 -4295910 + MER33 DNA MER1_type 1 245 -2340 2219 102 0 13 chr15 97084611 97084926 -4295595 - AluSx SINE Alu -1 311 1 1439 152 36 40 chr15 97084926 97084984 -4295537 + MER33 DNA MER1_type 245 302 -22 2006 143 64 12 chr15 97085725 97086067 -4294454 - MLT1A1 LTR MaLR -5 360 1 2179 98 0 3 chr15 97086570 97086867 -4293654 - AluSx SINE Alu -16 296 1 1585 183 0 13 chr15 97088319 97088620 -4291901 + AluJb SINE Alu 1 297 -15 201 39 0 0 chr15 97090266 97090292 -4290229 + (TC)n Simple_repeat Simple_repeat 1 26 0 229 280 0 0 chr15 97091900 97091950 -4288571 + (TG)n Simple_repeat Simple_repeat 2 51 0 203 156 0 0 chr15 97095458 97095490 -4285031 + GA-rich Low_complexity Low_complexity 1 32 0 293 288 0 0 chr15 97095578 97095651 -4284870 + MER96 DNA MER1_type? 103 175 0 2751 74 8 3 chr15 97099642 97099995 -4280526 - THE1A LTR MaLR 0 355 1 424 260 137 43 chr15 97100021 97100251 -4280270 - MIR SINE MIR -1 261 2 2366 104 0 3 chr15 97100671 97100979 -4279542 - AluSq SINE Alu -6 307 1 1281 165 161 28 chr15 97102629 97102883 -4277638 - AluJb SINE Alu -24 288 1 253 299 62 0 chr15 97104629 97104726 -4275795 - MLT1K LTR MaLR -16 572 470 2125 128 6 3 chr15 97106001 97106313 -4274208 - AluSq SINE Alu 0 313 1 28 0 0 0 chr15 97106979 97107007 -4273514 + AT_rich Low_complexity Low_complexity 1 28 0 537 205 0 57 chr15 97107621 97107743 -4272778 - FLAM_A SINE Alu -18 115 1 749 245 0 0 chr15 97107792 97107951 -4272570 + FRAM SINE Alu 2 160 -16 1668 144 78 7 chr15 97109023 97109293 -4271228 - AluSx SINE Alu -23 289 1 234 0 0 0 chr15 97110637 97110663 -4269858 + (T)n Simple_repeat Simple_repeat 1 26 0 344 200 32 21 chr15 97112061 97112156 -4268365 - MIR SINE MIR -72 190 95 2070 107 76 0 chr15 97112771 97113061 -4267460 + AluSx SINE Alu 1 312 0 506 268 87 57 chr15 97113181 97114044 -4266477 - L1P LINE L1 -2189 3957 3067 2157 132 0 7 chr15 97114481 97114776 -4265745 - AluSx SINE Alu -19 293 1 335 316 47 19 chr15 97114816 97115031 -4265490 - L1M4 LINE L1 -3657 2489 2269 22 56 0 0 chr15 97115501 97115537 -4264984 + AT_rich Low_complexity Low_complexity 1 36 0 1994 121 7 39 chr15 97117370 97117675 -4262846 + AluSx SINE Alu 1 295 -17 416 296 30 15 chr15 97119129 97119264 -4261257 - L2 LINE L2 0 3272 3136 801 156 7 0 chr15 97119538 97119673 -4260848 - FRAM SINE Alu 0 40 1 21 71 0 0 chr15 97119714 97119756 -4260765 + AT_rich Low_complexity Low_complexity 1 42 0 2195 131 3 6 chr15 97119758 97120071 -4260450 + AluSx SINE Alu 1 312 0 2359 97 0 0 chr15 97120078 97120377 -4260144 + AluSc SINE Alu 1 299 -10 2335 157 11 0 chr15 97122110 97122492 -4258029 - L1MB5 LINE L1 0 6174 5789 1869 127 32 48 chr15 97122621 97122936 -4257585 - AluSx SINE Alu -2 310 1 2273 112 0 0 chr15 97125647 97125943 -4254578 + AluSg SINE Alu 1 296 -14 2182 73 0 31 chr15 97125952 97126274 -4254247 + AluY SINE Alu 3 315 0 1933 139 103 3 chr15 97127555 97127922 -4252599 + L1MA4 LINE L1 5896 6299 -1 351 0 0 0 chr15 97129789 97129828 -4250693 + (TTA)n Simple_repeat Simple_repeat 2 40 0 899 171 20 0 chr15 97129841 97129987 -4250534 - AluJo SINE Alu -44 268 120 1871 132 55 37 chr15 97131809 97132188 -4248333 + L1MB3 LINE L1 5794 6179 -4 454 253 29 47 chr15 97132620 97132790 -4247731 + MER5B DNA MER1_type 12 178 0 659 159 31 31 chr15 97133038 97133201 -4247320 - MER5A DNA MER1_type -26 163 1 33 0 0 0 chr15 97133453 97133486 -4247035 + AT_rich Low_complexity Low_complexity 1 33 0 2139 134 0 3 chr15 97133486 97133799 -4246722 - AluSx SINE Alu 0 312 1 253 226 19 0 chr15 97135727 97135780 -4244741 - MIR3 SINE MIR -46 162 109 561 238 79 6 chr15 97136699 97136863 -4243658 - MIR SINE MIR -10 252 77 22 0 0 0 chr15 97137403 97137425 -4243096 + AT_rich Low_complexity Low_complexity 1 22 0 183 139 0 0 chr15 97137468 97137504 -4243017 + (A)n Simple_repeat Simple_repeat 1 36 0 255 122 0 20 chr15 97137512 97137561 -4242960 - MIR SINE MIR -32 230 183 2073 134 13 7 chr15 97137583 97137890 -4242631 + AluSp SINE Alu 1 309 -4 1049 206 5 32 chr15 97138231 97138450 -4242071 + AluJb SINE Alu 84 296 -16 246 305 66 13 chr15 97138456 97138607 -4241914 + L1M4 LINE L1 4500 4658 -1488 352 207 12 0 chr15 97139318 97139400 -4241121 - FLAM SINE Alu -9 124 42 332 258 90 9 chr15 97139831 97140029 -4240492 - L1MC4a LINE L1 -301 5820 5695 244 247 27 44 chr15 97139947 97140094 -4240427 - L1PA8A LINE L1 -352 5779 5632 * 1839 197 108 2 chr15 97140443 97140849 -4239672 - L1MD1 LINE L1 -17 6225 5777 462 202 54 8 chr15 97140847 97140976 -4239545 - L1MD1 LINE L1 -1615 4531 4397 * 22 0 0 0 chr15 97142524 97142546 -4237975 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr15 97144185 97144214 -4236307 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 279 0 0 0 chr15 97144213 97144244 -4236277 + (TG)n Simple_repeat Simple_repeat 2 32 0 2038 200 21 65 chr15 97151140 97151614 -4228907 - MER74A LTR ERVL -105 453 1 2146 124 0 3 chr15 97152067 97152365 -4228156 + AluSx SINE Alu 1 297 -15 259 341 0 0 chr15 97152680 97152768 -4227753 + L3 LINE CR1 1180 1267 -310 2298 63 11 0 chr15 97152794 97153080 -4227441 - AluY SINE Alu -22 289 1 225 0 0 0 chr15 97153667 97153692 -4226829 + (TGGA)n Simple_repeat Simple_repeat 1 25 0 1820 141 25 14 chr15 97153698 97153974 -4226547 - AluJo SINE Alu -33 279 1 2211 96 0 7 chr15 97156365 97156685 -4223836 - AluY SINE Alu 0 311 6 317 314 25 0 chr15 97157390 97157511 -4223010 - L2 LINE L2 -1 3312 3189 413 227 42 59 chr15 97157731 97157850 -4222671 + L2 LINE L2 3194 3310 -3 398 245 176 0 chr15 97158767 97158926 -4221595 - L2 LINE L2 -105 3208 3022 416 293 189 22 chr15 97159017 97159287 -4221234 - L2 LINE L2 -2 3311 2997 631 221 156 18 chr15 97159321 97159597 -4220924 - L2 LINE L2 -463 2851 2538 489 189 257 0 chr15 97159821 97159969 -4220552 - MIR SINE MIR 0 262 77 2408 138 92 17 chr15 97164044 97164458 -4216063 - Tigger3(Golem) DNA MER2_type -1 3028 2584 1974 138 0 0 chr15 97164473 97164780 -4215741 - AluJb SINE Alu 0 307 1 1711 175 71 0 chr15 97164780 97165106 -4215415 - Tigger3(Golem) DNA MER2_type -2680 349 1 252 0 0 0 chr15 97165427 97165455 -4215066 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 1949 103 62 4 chr15 97165698 97165970 -4214551 - AluSx SINE Alu -24 288 1 218 32 32 0 chr15 97166466 97166497 -4214024 + (TG)n Simple_repeat Simple_repeat 1 32 0 769 268 42 35 chr15 97166769 97167053 -4213468 - MER21B LTR ERV1 -51 812 527 242 211 23 109 chr15 97167117 97167245 -4213276 - MER21A LTR ERV1 -329 602 486 936 144 0 0 chr15 97167853 97167992 -4212529 + FLAM_C SINE Alu 1 139 -4 307 167 117 67 chr15 97168578 97168698 -4211823 + MIR SINE MIR 116 241 -21 198 317 87 39 chr15 97169499 97169603 -4210918 - L2 LINE L2 -17 3255 3147 1868 147 3 36 chr15 97169650 97169957 -4210564 - AluJo SINE Alu -11 301 5 21 36 0 0 chr15 97171358 97171386 -4209135 + AT_rich Low_complexity Low_complexity 1 28 0 2528 55 13 0 chr15 97171514 97171821 -4208700 - AluY SINE Alu 0 311 1 2178 102 3 0 chr15 97172535 97172864 -4207657 + AluSx SINE Alu 2 331 0 318 203 0 0 chr15 97173181 97173240 -4207281 - MLT1A2 LTR MaLR -7 367 309 1090 238 18 29 chr15 97173437 97173714 -4206807 - MLT1A2 LTR MaLR -69 305 32 352 315 73 15 chr15 97173770 97174030 -4206491 - L2 LINE L2 -460 2854 2580 259 178 0 0 chr15 97174034 97174079 -4206442 - MER20 DNA MER1_type -2 217 173 1033 154 13 90 chr15 97174131 97174365 -4206156 - MER20 DNA MER1_type -3 216 1 348 259 21 110 chr15 97174449 97174731 -4205790 - L2 LINE L2 -841 2473 2217 1681 219 97 27 chr15 97174759 97174819 -4205702 - Charlie1b DNA MER1_type -2238 523 469 1793 173 79 12 chr15 97174819 97175161 -4205360 + MLT1A1 LTR MaLR 1 365 0 1681 219 97 27 chr15 97175161 97175584 -4204937 - Charlie1b DNA MER1_type -2292 469 6 22 0 0 0 chr15 97175716 97175738 -4204783 + AT_rich Low_complexity Low_complexity 1 22 0 2301 96 3 19 chr15 97180336 97180650 -4199871 - AluSx SINE Alu -1 311 3 1708 135 53 43 chr15 97180789 97180898 -4199623 + MER2 DNA MER2_type 33 139 -206 2024 129 69 13 chr15 97180898 97181216 -4199305 + MER1B DNA MER1_type 1 336 -1 1708 135 53 43 chr15 97181216 97181410 -4199111 + MER2 DNA MER2_type 139 339 -6 2136 72 0 0 chr15 97183144 97183394 -4197127 - AluSg SINE Alu -60 250 1 1832 138 90 74 chr15 97186009 97186119 -4194402 - MSTB LTR MaLR -29 397 290 2290 114 0 0 chr15 97186119 97186417 -4194104 - AluSx SINE Alu -14 298 1 1832 138 90 74 chr15 97186417 97186696 -4193825 - MSTB LTR MaLR -136 290 2 885 226 88 29 chr15 97187025 97187558 -4192963 - LTR29 LTR ERV1 -10 727 25 210 379 100 7 chr15 97187622 97187762 -4192759 + L2 LINE L2 3034 3186 -86 408 206 0 0 chr15 97190594 97190740 -4189781 + (CA)n Simple_repeat Simple_repeat 2 147 0 1866 213 99 16 chr15 97191715 97191766 -4188755 - L1MD3 LINE L1 -10 7985 7940 1393 177 62 24 chr15 97191766 97192054 -4188467 + AluJo SINE Alu 3 301 -11 1866 213 99 16 chr15 97192054 97192591 -4187930 - L1MD3 LINE L1 -55 7940 7250 826 142 203 93 chr15 97192591 97192749 -4187772 - AluJo SINE Alu -1 311 172 183 42 0 0 chr15 97192749 97192773 -4187748 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1927 104 37 11 chr15 97192773 97193043 -4187478 - AluSc SINE Alu -32 277 1 826 142 203 93 chr15 97193043 97193129 -4187392 - AluJo SINE Alu -139 173 39 461 292 71 0 chr15 97193145 97193299 -4187222 - L1MD3 LINE L1 -764 7231 7067 816 235 94 4 chr15 97194638 97194872 -4185649 - MIR SINE MIR -6 256 2 1271 210 36 25 chr15 97195979 97196179 -4184342 - AluJo SINE Alu -28 284 79 2409 86 0 16 chr15 97196179 97196494 -4184027 - AluSx SINE Alu -2 310 1 1271 210 36 25 chr15 97196494 97196574 -4183947 - AluJo SINE Alu -233 79 1 799 239 91 0 chr15 97196786 97196983 -4183538 + MIR SINE MIR 43 257 -5 45 45 0 0 chr15 97199033 97199099 -4181422 + AT_rich Low_complexity Low_complexity 1 66 0 207 0 0 0 chr15 97200130 97200153 -4180368 + (TG)n Simple_repeat Simple_repeat 2 24 0 786 117 27 25 chr15 97200886 97201118 -4179403 + CT-rich Low_complexity Low_complexity 1 232 0 1917 162 3 0 chr15 97202493 97202789 -4177732 - AluSx SINE Alu -15 297 1 201 253 38 63 chr15 97202913 97202992 -4177529 + MIR SINE MIR 2 78 -184 201 254 42 28 chr15 97202992 97203063 -4177458 + MIR SINE MIR 116 187 -75 277 321 140 23 chr15 97203285 97203653 -4176868 - LTR16B LTR ERVL -2 448 24 1248 270 92 53 chr15 97204419 97205658 -4174863 + L1MC/D LINE L1 4475 5760 -743 221 209 109 55 chr15 97205763 97205873 -4174648 - L2 LINE L2 -275 3038 2923 22 0 0 0 chr15 97207856 97207878 -4172643 + GC_rich Low_complexity Low_complexity 1 22 0 241 298 180 25 chr15 97211865 97212026 -4168495 + MIR SINE MIR 77 262 0 264 276 79 39 chr15 97212235 97212362 -4168159 - L2 LINE L2 0 3272 3141 207 0 0 0 chr15 97212720 97212743 -4167778 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2224 113 0 0 chr15 97212748 97213032 -4167489 - AluSx SINE Alu -28 284 1 1089 156 45 0 chr15 97213093 97213292 -4167229 + MER3 DNA MER1_type 2 209 0 311 352 68 6 chr15 97214757 97214919 -4165602 - MIR SINE MIR -71 191 20 1793 86 17 17 chr15 97215436 97215670 -4164851 - AluSg SINE Alu -19 291 58 256 292 11 0 chr15 97216522 97216611 -4163910 + CT-rich Low_complexity Low_complexity 1 90 0 304 320 33 8 chr15 97217109 97217231 -4163290 + MIR SINE MIR 21 145 -117 2292 219 97 29 chr15 97218301 97219043 -4161478 - L1MC2 LINE L1 0 7808 6186 1703 171 14 3 chr15 97219489 97219775 -4160746 + AluJo SINE Alu 1 289 -23 1403 179 25 25 chr15 97219914 97220199 -4160322 - AluJo SINE Alu -27 285 1 22 35 0 0 chr15 97220279 97220308 -4160213 + AT_rich Low_complexity Low_complexity 1 29 0 315 71 0 0 chr15 97222656 97222698 -4157823 + (GA)n Simple_repeat Simple_repeat 1 42 0 1660 167 50 14 chr15 97223432 97223714 -4156807 + AluSx SINE Alu 1 292 -20 892 121 142 0 chr15 97223717 97223858 -4156663 + AluJb SINE Alu 140 300 -12 578 294 49 16 chr15 97224088 97224333 -4156188 + MIR SINE MIR 5 257 -5 2336 84 3 3 chr15 97224945 97225244 -4155277 - AluSp SINE Alu -10 303 5 372 263 91 105 chr15 97225503 97225602 -4154919 - L2 LINE L2 -57 3256 3157 1061 173 15 5 chr15 97225602 97225799 -4154722 - L1MB3 LINE L1 -7 6176 5978 372 263 91 105 chr15 97225799 97226109 -4154412 - L2 LINE L2 -156 3157 2852 2089 131 60 23 chr15 97227026 97227377 -4153144 - THE1B LTR MaLR 0 364 1 215 286 0 29 chr15 97228188 97228258 -4152263 - MIR SINE MIR -175 87 20 215 289 113 44 chr15 97230062 97230221 -4150300 + MIR3 SINE MIR 23 192 -16 261 139 0 0 chr15 97230836 97230879 -4149642 + (T)n Simple_repeat Simple_repeat 1 43 0 305 87 0 0 chr15 97232267 97232313 -4148208 + (A)n Simple_repeat Simple_repeat 1 46 0 2217 104 0 13 chr15 97232313 97232612 -4147909 + AluY SINE Alu 1 295 -16 25 31 0 0 chr15 97232860 97232892 -4147629 + AT_rich Low_complexity Low_complexity 1 32 0 1949 152 27 27 chr15 97233391 97233759 -4146762 + L1MB8 LINE L1 5811 6178 0 391 224 0 0 chr15 97234309 97234376 -4146145 + MER2 DNA MER2_type 1 67 -278 2263 94 0 7 chr15 97234915 97235226 -4145295 - AluSx SINE Alu 0 309 1 212 288 100 35 chr15 97235306 97235514 -4145007 + MIR SINE MIR 38 262 0 200 292 95 44 chr15 97235511 97235648 -4144873 + L3 LINE CR1 814 957 -620 * 187 359 42 42 chr15 97235794 97236006 -4144515 + L3 LINE CR1 1230 1441 -136 222 253 140 33 chr15 97237849 97237999 -4142522 + L2 LINE L2 2213 2378 -936 2136 81 54 20 chr15 97238016 97238312 -4142209 + AluY SINE Alu 1 306 -5 2296 106 0 3 chr15 97239225 97239526 -4140995 - AluSp SINE Alu -13 300 1 209 331 23 46 chr15 97241204 97241334 -4139187 + L2 LINE L2 2632 2758 -556 252 0 0 0 chr15 97241847 97241875 -4138646 + (TG)n Simple_repeat Simple_repeat 2 29 0 323 290 16 13 chr15 97241882 97242095 -4138426 - MARNA DNA Mariner -51 535 280 227 209 209 93 chr15 97242135 97242149 -4138372 - MARNA DNA Mariner -395 191 180 1540 250 106 9 chr15 97242149 97242613 -4137908 - MLT1J LTR MaLR 0 511 3 227 209 209 93 chr15 97242613 97242727 -4137794 - MARNA DNA Mariner -406 180 48 258 329 0 0 chr15 97242742 97242818 -4137703 + L1ME LINE L1 5506 5581 -540 225 258 118 0 chr15 97242888 97242981 -4137540 + L1ME LINE L1 5714 5817 -304 3385 116 73 2 chr15 97243569 97244086 -4136435 + MER41A LTR ERV1 1 554 0 209 266 37 64 chr15 97244405 97244517 -4136004 - MIR SINE MIR -59 149 66 1742 139 93 0 chr15 97245679 97245959 -4134562 + AluSx SINE Alu 1 306 -6 1471 173 25 14 chr15 97246155 97246432 -4134089 + AluJb SINE Alu 14 293 -19 21 0 0 0 chr15 97246557 97246578 -4133943 + AT_rich Low_complexity Low_complexity 1 21 0 1091 160 11 16 chr15 97247477 97247664 -4132857 - AluJo SINE Alu -4 308 123 1769 183 29 9 chr15 97247681 97248030 -4132491 + L1MD2 LINE L1 5596 5951 -408 1025 99 0 0 chr15 97248030 97248161 -4132360 + AluSq/x SINE Alu 1 131 -181 1932 126 65 0 chr15 97248165 97248443 -4132078 + AluSx SINE Alu 1 296 -16 414 0 0 0 chr15 97248568 97248614 -4131907 + (CA)n Simple_repeat Simple_repeat 1 46 0 498 144 52 85 chr15 97248616 97248769 -4131752 + L1MD3 LINE L1 7843 7990 -5 1025 179 5 11 chr15 97250908 97251092 -4129429 - FRAM SINE Alu 0 176 1 369 165 240 16 chr15 97252230 97252351 -4128170 - L1ME4a LINE L1 -4 6117 5970 192 282 53 72 chr15 97254997 97255206 -4125315 - L2 LINE L2 -210 3062 2858 631 232 5 88 chr15 97255350 97255544 -4124977 + MER5B DNA MER1_type 1 178 0 248 145 0 30 chr15 97255628 97255683 -4124838 - L1M3 LINE L1 -309 5872 5820 2124 94 7 0 chr15 97255687 97255985 -4124536 - AluSg SINE Alu -10 300 1 1666 187 55 113 chr15 97256766 97257321 -4123200 + L1ME1 LINE L1 5598 6121 -57 2247 80 3 3 chr15 97257321 97257623 -4122898 - AluY SINE Alu -9 302 1 1666 187 55 113 chr15 97257623 97257673 -4122848 + L1ME1 LINE L1 6121 6172 -6 1535 190 3 26 chr15 97258646 97258956 -4121565 + AluJb SINE Alu 1 303 -9 290 357 13 26 chr15 97260294 97260448 -4120073 - MIR3 SINE MIR -21 187 36 726 128 158 24 chr15 97261144 97261308 -4119213 + MER5A DNA MER1_type 4 189 0 2160 112 10 0 chr15 97262523 97262826 -4117695 - AluSx SINE Alu -2 310 5 1909 195 0 24 chr15 97267197 97267571 -4112950 - MLT1A1 LTR MaLR 0 365 1 2133 117 0 0 chr15 97269533 97269833 -4110688 - AluSx SINE Alu -12 300 1 1987 205 25 27 chr15 97270807 97271281 -4109240 + L1MB4 LINE L1 5694 6166 -14 22 80 0 0 chr15 97271287 97271337 -4109184 + AT_rich Low_complexity Low_complexity 1 50 0 743 103 9 0 chr15 97271870 97271977 -4108544 + AluSg SINE Alu 1 108 -202 241 284 37 84 chr15 97276202 97276392 -4104129 + MIR3 SINE MIR 17 197 -11 250 316 25 0 chr15 97278009 97278088 -4102433 - L3 LINE CR1 -16 1561 1481 2119 121 3 3 chr15 97278527 97278834 -4101687 + AluSx SINE Alu 2 308 -4 3453 125 51 22 chr15 97278848 97279495 -4101026 + L1MA8 LINE L1 5620 6285 -6 882 275 20 69 chr15 97280123 97280428 -4100093 - L3b LINE CR1 -190 1393 1104 521 328 53 25 chr15 97280763 97281086 -4099435 + L2 LINE L2 2262 2593 -721 182 346 119 13 chr15 97281305 97281464 -4099057 + L2 LINE L2 2659 2834 -480 288 314 85 7 chr15 97283623 97283776 -4096745 - MIR SINE MIR -39 223 59 705 170 105 13 chr15 97284326 97284479 -4096042 + AluJo SINE Alu 120 286 -26 233 283 0 0 chr15 97285887 97285947 -4094574 + CT-rich Low_complexity Low_complexity 3 62 0 1584 151 66 0 chr15 97285978 97286249 -4094272 - AluJb SINE Alu -23 289 1 762 223 83 73 chr15 97286556 97286857 -4093664 - MER33 DNA MER1_type -20 304 1 22 0 0 0 chr15 97289234 97289256 -4091265 + AT_rich Low_complexity Low_complexity 1 22 0 2198 100 0 0 chr15 97289519 97289809 -4090712 - AluSx SINE Alu -22 290 1 501 286 43 6 chr15 97289956 97290117 -4090404 + MIR3 SINE MIR 26 192 -16 2043 125 0 3 chr15 97293033 97293328 -4087193 - AluSq SINE Alu -19 294 1 345 286 87 10 chr15 97293699 97293905 -4086616 + MIR SINE MIR 35 256 -6 1686 171 0 19 chr15 97294954 97295263 -4085258 - AluJo SINE Alu -9 303 1 263 306 153 37 chr15 97297302 97297733 -4082788 - L3 LINE CR1 -10 1567 1087 269 244 39 39 chr15 97298245 97298323 -4082198 + MIR SINE MIR 69 146 -62 258 105 0 0 chr15 97298624 97298662 -4081859 + (ATG)n Simple_repeat Simple_repeat 3 40 0 21 0 0 0 chr15 97299557 97299578 -4080943 + AT_rich Low_complexity Low_complexity 1 21 0 519 208 65 54 chr15 97300517 97300685 -4079836 + MER5B DNA MER1_type 7 176 -2 269 313 23 46 chr15 97300691 97300822 -4079699 + MER5B DNA MER1_type 2 129 -49 2119 97 28 0 chr15 97302003 97302293 -4078228 - AluSx SINE Alu -13 299 2 1246 215 191 84 chr15 97302947 97303472 -4077049 - MLT1E1 LTR MaLR -62 592 12 211 358 12 25 chr15 97303978 97304059 -4076462 - L3 LINE CR1 -3 1574 1495 1097 229 71 27 chr15 97304066 97304396 -4076125 - MLT1F LTR MaLR 0 542 198 1237 253 40 12 chr15 97304396 97304720 -4075801 - MER58B DNA MER1_type 0 341 9 303 283 147 54 chr15 97304727 97304911 -4075610 - MLT1F LTR MaLR -338 204 4 252 0 0 0 chr15 97304927 97304955 -4075566 + (CA)n Simple_repeat Simple_repeat 2 29 0 514 269 51 46 chr15 97307661 97307836 -4072685 + MIR SINE MIR 58 233 -29 411 248 27 54 chr15 97307985 97308134 -4072387 - MER58B DNA MER1_type 0 341 197 22 0 0 0 chr15 97311827 97311849 -4068672 + AT_rich Low_complexity Low_complexity 1 22 0 230 56 28 0 chr15 97312603 97312639 -4067882 + (TG)n Simple_repeat Simple_repeat 1 37 0 207 114 29 0 chr15 97312907 97312942 -4067579 + T-rich Low_complexity Low_complexity 2 37 0 1976 120 0 3 chr15 97317982 97318266 -4062255 + AluSx SINE Alu 5 287 -25 206 329 59 0 chr15 97318660 97318745 -4061776 - MIR SINE MIR -50 212 123 2182 106 3 6 chr15 97319352 97319663 -4060858 - AluSq SINE Alu -3 310 1 2779 198 52 2 chr15 97320054 97320635 -4059886 + L1MB3 LINE L1 5533 6142 -41 2052 113 17 0 chr15 97322671 97322973 -4057548 - AluSx SINE Alu -2 310 4 1061 119 0 0 chr15 97323998 97324149 -4056372 + AluSg/x SINE Alu 156 306 -6 6841 191 37 24 chr15 97324152 97324702 -4055819 + L1M1 LINE L1 2841 3382 -4183 2073 123 0 0 chr15 97324702 97325028 -4055493 + AluSq SINE Alu 1 326 0 6841 191 37 24 chr15 97325028 97325218 -4055303 + L1M1 LINE L1 3382 3568 -3997 2106 117 0 16 chr15 97325218 97325534 -4054987 + AluY SINE Alu 1 311 0 6841 191 37 24 chr15 97325534 97326730 -4053791 + L1M1 LINE L1 3568 4830 -2735 1799 155 13 7 chr15 97326730 97327040 -4053481 + AluJb SINE Alu 1 312 0 6841 191 37 24 chr15 97327040 97327246 -4053275 + L1M1 LINE L1 4830 5032 -2533 2033 103 3 10 chr15 97327246 97327563 -4052958 + AluSq SINE Alu 1 313 0 4007 120 19 40 chr15 97327569 97328229 -4052292 + L1MA4 LINE L1 5612 6258 -42 2196 92 0 3 chr15 97328229 97328524 -4051997 + AluSx SINE Alu 1 294 -18 4007 120 19 40 chr15 97328524 97328563 -4051958 + L1MA4 LINE L1 6258 6296 -4 1320 161 32 57 chr15 97328583 97328899 -4051622 + L1MB3 LINE L1 5876 6183 0 229 235 29 44 chr15 97329542 97329610 -4050911 + MIR SINE MIR 114 180 -82 2608 203 111 13 chr15 97329757 97330530 -4049991 - L1M4 LINE L1 -2884 3262 2414 189 0 0 0 chr15 97331338 97331359 -4049162 + (TA)n Simple_repeat Simple_repeat 1 21 0 2325 80 0 0 chr15 97331359 97331659 -4048862 - AluSc SINE Alu -9 300 1 26 0 0 0 chr15 97331664 97331690 -4048831 + AT_rich Low_complexity Low_complexity 1 26 0 313 248 34 40 chr15 97331817 97331966 -4048555 - MER104 DNA Tc2 -4 176 29 3032 92 4 35 chr15 97332104 97332270 -4048251 + L1PB1 LINE L1 5709 5879 -272 1874 103 4 0 chr15 97332270 97332533 -4047988 - AluSg SINE Alu 0 310 47 3032 92 4 35 chr15 97332533 97332822 -4047699 + L1PB1 LINE L1 5879 6150 -1 2950 199 42 78 chr15 97333024 97333281 -4047240 + L1MC3 LINE L1 6973 7238 -547 1940 135 0 3 chr15 97333281 97333584 -4046937 + AluSx SINE Alu 1 302 -10 2950 199 42 78 chr15 97333584 97333842 -4046679 + L1MC3 LINE L1 7238 7504 -281 2483 42 7 0 chr15 97333842 97334149 -4046372 + AluY SINE Alu 1 309 -2 2950 199 42 78 chr15 97334149 97334476 -4046045 + L1MC3 LINE L1 7504 7785 0 2200 114 0 0 chr15 97335332 97335640 -4044881 - AluSx SINE Alu -4 308 1 22 0 0 0 chr15 97335942 97335964 -4044557 + AT_rich Low_complexity Low_complexity 1 22 0 2131 83 37 3 chr15 97336639 97336939 -4043582 - AluY SINE Alu -1 310 1 2070 106 3 0 chr15 97337885 97338194 -4042327 + AluSx SINE Alu 1 310 0 388 319 43 12 chr15 97338293 97338456 -4042065 + MIR SINE MIR 39 206 -56 1822 253 140 45 chr15 97338764 97339423 -4041098 + MER21B LTR ERV1 18 738 -125 2134 116 3 3 chr15 97339515 97339825 -4040696 + AluSg SINE Alu 1 310 0 324 345 82 22 chr15 97339960 97340227 -4040294 + LTR67 LTR ERVL 120 402 -155 32693 101 21 64 chr15 97340324 97346194 -4034327 + L1PA7 LINE L1 13 5614 -540 1999 57 8 15 chr15 97346194 97346454 -4034067 + L1PA7 LINE L1 5884 6143 -11 2097 110 0 3 chr15 97346615 97346907 -4033614 + AluSc SINE Alu 1 291 -18 355 126 0 12 chr15 97347001 97347232 -4033289 + AluJo SINE Alu 1 298 -4 829 280 104 31 chr15 97347331 97347946 -4032575 - L1MEc LINE L1 -4653 1657 998 1369 140 28 87 chr15 97347987 97348045 -4032476 - L1MB8 LINE L1 -11 6167 6107 2184 90 7 0 chr15 97348045 97348333 -4032188 + AluSx SINE Alu 1 290 -22 1369 140 28 87 chr15 97348333 97348595 -4031926 - L1MB8 LINE L1 -71 6107 5866 314 315 86 17 chr15 97348595 97348897 -4031624 - L1MEc LINE L1 -5138 981 659 387 233 17 22 chr15 97349125 97349305 -4031216 + (TATG)n Simple_repeat Simple_repeat 1 179 0 246 197 49 16 chr15 97349414 97349475 -4031046 + LTR67 LTR ERVL 492 554 -3 568 272 187 0 chr15 97349510 97349696 -4030825 - MIR SINE MIR -19 243 24 479 258 52 81 chr15 97350234 97350482 -4030039 - MIR SINE MIR -1 261 21 2810 217 47 6 chr15 97351107 97351325 -4029196 + L1MD2 LINE L1 4814 5022 -1337 2194 102 17 0 chr15 97351325 97351620 -4028901 + AluSx SINE Alu 1 300 -12 2810 217 47 6 chr15 97351620 97352379 -4028142 + L1MD2 LINE L1 5022 5821 -538 754 86 17 8 chr15 97352378 97352495 -4028026 + L1MB7 LINE L1 5726 5843 -341 * 4275 108 139 141 chr15 97352495 97353875 -4026646 + pTR5 LTR ERV1 743 2436 -2 1520 184 37 32 chr15 97353875 97354223 -4026298 + L1MB7 LINE L1 5835 6184 0 1577 176 149 51 chr15 97354231 97354341 -4026180 + L1MD2 LINE L1 5821 5919 -440 2162 136 3 0 chr15 97354341 97354649 -4025872 - AluSx SINE Alu -3 309 1 1564 181 62 4 chr15 97354652 97354928 -4025593 - AluJo SINE Alu -20 292 1 1577 176 149 51 chr15 97354928 97355302 -4025219 + L1MD2 LINE L1 5920 6357 -2 1692 169 6 25 chr15 97356752 97357066 -4023455 + AluJo SINE Alu 1 308 -4 2401 86 0 7 chr15 97357069 97357371 -4023150 + AluSc SINE Alu 1 300 -9 1094 187 152 31 chr15 97359178 97359435 -4021086 + AluJo SINE Alu 1 288 -14 6507 147 216 22 chr15 97360008 97361431 -4019090 - pTR5 LTR ERV1 0 2438 741 2291 90 0 0 chr15 97361491 97361791 -4018730 - AluSg1 SINE Alu -9 300 1 26 57 0 0 chr15 97363694 97363729 -4016792 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr15 97363904 97363926 -4016595 + AT_rich Low_complexity Low_complexity 1 22 0 1305 100 0 28 chr15 97364136 97364316 -4016205 + AluSq SINE Alu 1 175 -138 2049 131 0 14 chr15 97364418 97364709 -4015812 + AluSx SINE Alu 20 306 -6 1117 128 34 89 chr15 97364953 97365007 -4015514 - LTR10E LTR ERV1 -12 621 566 2482 85 0 0 chr15 97365007 97365314 -4015207 + AluY SINE Alu 1 307 -4 1117 128 34 89 chr15 97365314 97365494 -4015027 - LTR10E LTR ERV1 -67 566 400 526 284 0 0 chr15 97365614 97365762 -4014759 + L1M4 LINE L1 2376 2523 -3623 2620 295 32 14 chr15 97365769 97367078 -4013443 + L1M4 LINE L1 2605 3936 -2210 290 289 56 0 chr15 97367223 97367313 -4013208 - MLT1G1 LTR MaLR -183 412 318 333 315 81 20 chr15 97367370 97367519 -4013002 - MLT1G1 LTR MaLR -293 302 145 390 297 18 0 chr15 97367553 97367664 -4012857 + MER81 DNA DNA 2 114 0 2025 154 116 15 chr15 97368359 97368748 -4011773 - MSTA LTR MaLR 0 428 1 254 211 64 92 chr15 97368928 97369037 -4011484 - REP3 LTR ERV -72 490 385 423 218 68 30 chr15 97369229 97369362 -4011159 - REP3 LTR ERV -415 147 10 647 185 0 0 chr15 97370134 97370253 -4010268 + AluSg/x SINE Alu 186 304 -6 1951 122 4 11 chr15 97370279 97370557 -4009964 + AluSq SINE Alu 1 276 -37 197 32 0 32 chr15 97370560 97370591 -4009930 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 298 221 15 52 chr15 97370939 97371075 -4009446 + L1MC5 LINE L1 7598 7728 -233 1228 230 4 0 chr15 97372026 97372256 -4008265 - HERVL18 LTR ERVL -4662 1385 1155 1641 224 0 27 chr15 97372278 97372609 -4007912 - HERVL18 LTR ERVL -5631 416 95 2523 129 20 0 chr15 97372633 97372983 -4007538 - LTR18A LTR ERVL 0 357 1 1552 167 4 8 chr15 97373019 97373282 -4007239 - MER50 LTR ERV1 -37 697 436 1133 111 119 49 chr15 97373278 97373504 -4007017 - MER50 LTR ERV1 -492 242 1 * 320 273 152 0 chr15 97373606 97373738 -4006783 + LTR40a LTR ERVL 3 154 -365 255 170 0 0 chr15 97374947 97374994 -4005527 + CT-rich Low_complexity Low_complexity 2 48 0 184 383 26 31 chr15 97375253 97375480 -4005041 + L2 LINE L2 2751 2976 -338 189 0 0 0 chr15 97375498 97375519 -4005002 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 532 194 19 0 chr15 97375521 97375624 -4004897 - AluJb SINE Alu -23 289 185 23 0 0 0 chr15 97375821 97375844 -4004677 + AT_rich Low_complexity Low_complexity 1 23 0 1804 104 89 11 chr15 97376328 97376608 -4003913 + AluSx SINE Alu 1 302 -10 1302 148 59 22 chr15 97376609 97376879 -4003642 - LTR56 LTR ERV1 -165 280 1 497 282 37 19 chr15 97376879 97377095 -4003426 - L1M4 LINE L1 -1199 4947 4728 1657 224 48 75 chr15 97377636 97378199 -4002322 - LTR55 LTR ERV 0 548 1 180 269 0 19 chr15 97378608 97378651 -4001870 + MIR3 SINE MIR 154 197 -11 2481 57 3 31 chr15 97378651 97378968 -4001553 + AluY SINE Alu 1 308 -3 246 35 0 0 chr15 97379647 97379676 -4000845 + Alu SINE Alu 246 274 -27 491 0 17 0 chr15 97379683 97379742 -4000779 + (TAAAA)n Simple_repeat Simple_repeat 2 61 0 1674 149 0 44 chr15 97380394 97380690 -3999831 - AluJo SINE Alu -19 293 11 1096 66 0 7 chr15 97380847 97380983 -3999538 + AluSq/x SINE Alu 1 135 -177 2412 102 0 0 chr15 97380983 97381296 -3999225 + AluSq SINE Alu 1 313 0 2579 37 0 7 chr15 97381854 97382152 -3998369 - AluY SINE Alu -15 296 1 304 79 0 0 chr15 97382294 97382332 -3998189 - LTR3b LTR ERVK 0 500 463 2933 105 66 13 chr15 97382332 97382800 -3997721 - LTR3b LTR ERVK 0 500 8 221 271 0 0 chr15 97383127 97383197 -3997324 + (CCG)n Simple_repeat Simple_repeat 2 71 0 248 109 0 22 chr15 97383201 97383247 -3997274 + (TCC)n Simple_repeat Simple_repeat 3 47 0 209 239 0 70 chr15 97383577 97383648 -3996873 + G-rich Low_complexity Low_complexity 2 67 0 22 0 0 0 chr15 97384006 97384028 -3996493 + GC_rich Low_complexity Low_complexity 1 22 0 1048 200 14 41 chr15 97384347 97384567 -3995954 - AluJo SINE Alu -24 288 75 866 130 93 37 chr15 97384667 97384829 -3995692 + AluJb SINE Alu 89 259 -53 966 197 28 6 chr15 97386938 97387116 -3993405 + MER58A DNA MER1_type 2 183 -41 2265 88 0 3 chr15 97387116 97387446 -3993075 - AluSq SINE Alu 0 329 1 210 147 0 0 chr15 97387563 97387597 -3992924 - MIR SINE MIR -211 51 18 186 43 0 0 chr15 97387699 97387722 -3992799 + (CA)n Simple_repeat Simple_repeat 2 24 0 1145 231 60 18 chr15 97387725 97388007 -3992514 - LTR16C LTR ERVL -2 489 196 2195 115 20 0 chr15 97388109 97388405 -3992116 - AluSp SINE Alu -11 302 1 1187 107 0 0 chr15 97388460 97388619 -3991902 - AluSg/x SINE Alu 0 310 152 234 269 50 42 chr15 97388636 97388755 -3991766 - MIR SINE MIR -62 200 81 299 323 39 8 chr15 97388805 97388935 -3991586 - L2 LINE L2 -23 3249 3116 2204 131 0 3 chr15 97388941 97389254 -3991267 - AluSx SINE Alu 0 312 1 839 219 0 56 chr15 97389254 97389469 -3991052 - MER106A DNA MER1_type -33 203 1 2190 114 3 0 chr15 97390851 97391148 -3989373 - AluSx SINE Alu -14 298 1 463 268 258 10 chr15 97391307 97391598 -3988923 + Charlie7 DNA MER1_type 33 395 -2217 742 299 75 48 chr15 97392026 97393126 -3987395 + L1MEd LINE L1 981 2148 -4573 644 143 0 0 chr15 97394398 97394503 -3986018 + FLAM_A SINE Alu 38 142 0 317 320 114 13 chr15 97394542 97394770 -3985751 + HAL1b LINE L1 390 640 -708 2354 95 0 3 chr15 97394922 97395227 -3985294 + AluSc SINE Alu 6 309 0 1918 122 12 44 chr15 97396511 97396830 -3983691 - AluSx SINE Alu -3 309 1 192 233 0 23 chr15 97396994 97397037 -3983484 + MIR SINE MIR 110 151 -57 249 109 0 0 chr15 97397717 97397763 -3982758 + (TC)n Simple_repeat Simple_repeat 2 47 0 2245 110 10 0 chr15 97398193 97398502 -3982019 + AluSx SINE Alu 1 312 0 1980 148 0 3 chr15 97398812 97399102 -3981419 + AluSx SINE Alu 1 289 -23 315 49 0 0 chr15 97399168 97399209 -3981312 + (TG)n Simple_repeat Simple_repeat 1 41 0 1962 237 110 52 chr15 97399230 97400065 -3980456 + L1MC5 LINE L1 6637 7520 -441 244 0 0 0 chr15 97400131 97400158 -3980363 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2336 92 0 0 chr15 97400158 97400442 -3980079 - AluSx SINE Alu -28 284 1 247 269 8 67 chr15 97400474 97400593 -3979928 + L1ME3 LINE L1 5961 6072 -90 1404 248 74 5 chr15 97400982 97401401 -3979120 + MLT1C LTR MaLR 1 448 -19 1267 169 247 121 chr15 97401402 97401864 -3978657 + MLT2B1 LTR ERVL 1 520 0 576 243 91 60 chr15 97401881 97401940 -3978581 + L1MEd LINE L1 2468 2524 -4016 1922 107 0 0 chr15 97401940 97402201 -3978320 + AluSx SINE Alu 9 269 -43 212 0 0 35 chr15 97402210 97402239 -3978282 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 576 243 91 60 chr15 97402239 97402587 -3977934 + L1MEd LINE L1 2531 2900 -3640 2074 116 0 0 chr15 97402587 97402888 -3977633 + AluSx SINE Alu 1 301 -11 576 243 91 60 chr15 97402888 97402936 -3977585 + L1MEd LINE L1 2900 2945 -3595 813 291 25 11 chr15 97403018 97403296 -3977225 + Charlie7 DNA MER1_type 440 721 -1891 320 145 0 16 chr15 97403428 97403490 -3977031 + (TTCCC)n Simple_repeat Simple_repeat 4 64 0 1192 146 18 92 chr15 97404187 97404488 -3976033 - AluJb SINE Alu 0 302 23 1502 148 0 8 chr15 97405253 97405496 -3975025 - AluSc SINE Alu -68 241 1 1637 151 4 0 chr15 97405609 97405868 -3974653 - AluJb SINE Alu -15 297 38 605 196 12 22 chr15 97405886 97406091 -3974430 - MLT1C LTR MaLR 0 467 294 270 0 0 0 chr15 97406093 97406123 -3974398 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 543 228 148 7 chr15 97406325 97406474 -3974047 + MLT1J1 LTR MaLR 1 170 -276 357 329 43 21 chr15 97407020 97407160 -3973361 + MIR3 SINE MIR 4 146 -62 706 249 68 23 chr15 97407264 97407485 -3973036 + MIR SINE MIR 31 261 -1 618 14 0 0 chr15 97407818 97407889 -3972632 + (TTTAG)n Simple_repeat Simple_repeat 3 73 0 1742 161 3 3 chr15 97407889 97408174 -3972347 - AluJb SINE Alu -27 285 1 1068 178 21 76 chr15 97410280 97410458 -3970063 + MER58A DNA MER1_type 2 166 -2254 1909 119 0 7 chr15 97410458 97410789 -3969732 - AluSq SINE Alu 0 329 1 1068 178 21 76 chr15 97410789 97410845 -3969676 + MER58A DNA MER1_type 166 224 0 2372 75 0 3 chr15 97411608 97411914 -3968607 - AluSq SINE Alu -8 305 1 221 255 0 0 chr15 97412014 97412065 -3968456 - MIR SINE MIR -194 68 18 186 43 0 0 chr15 97412167 97412190 -3968331 + (CA)n Simple_repeat Simple_repeat 2 24 0 1163 231 60 18 chr15 97412193 97412475 -3968046 - LTR16C LTR ERVL -2 489 196 2120 108 20 0 chr15 97412577 97412873 -3967648 - AluSp SINE Alu -11 302 1 1106 104 0 0 chr15 97412924 97413078 -3967443 - AluSg/x SINE Alu -5 305 152 286 272 49 42 chr15 97413095 97413223 -3967298 - MIR SINE MIR -62 146 73 347 338 34 7 chr15 97413246 97413394 -3967127 - L2 LINE L2 -5 3267 3116 2082 131 0 3 chr15 97413400 97413713 -3966808 - AluSx SINE Alu 0 312 1 836 223 0 56 chr15 97413713 97413928 -3966593 - MER106A DNA MER1_type -33 203 1 1155 256 76 71 chr15 97414909 97415105 -3965416 + Charlie7 DNA MER1_type 1814 2008 -604 890 116 12 70 chr15 97415105 97415226 -3965295 + L1MB2 LINE L1 6010 6120 -51 2335 58 0 0 chr15 97415226 97415521 -3965000 + AluY SINE Alu 1 295 -16 890 116 12 70 chr15 97415521 97415571 -3964950 + L1MB2 LINE L1 6120 6171 0 1155 256 76 71 chr15 97415571 97415959 -3964562 + Charlie7 DNA MER1_type 2008 2393 -219 1833 94 7 22 chr15 97415959 97416234 -3964287 + AluSg SINE Alu 28 298 -12 1155 256 76 71 chr15 97416234 97416380 -3964141 + Charlie7 DNA MER1_type 2393 2552 -60 351 0 0 0 chr15 97416380 97416419 -3964102 + (CA)n Simple_repeat Simple_repeat 2 40 0 1155 256 76 71 chr15 97416419 97416478 -3964043 + Charlie7 DNA MER1_type 2552 2609 -3 234 374 77 26 chr15 97416478 97416751 -3963770 - L3 LINE CR1 -42 1535 1249 658 316 105 51 chr15 97417063 97417368 -3963153 + L2 LINE L2 2376 2663 -650 1800 161 3 3 chr15 97417368 97417667 -3962854 + AluJb SINE Alu 1 299 -13 658 316 105 51 chr15 97417667 97417976 -3962545 + L2 LINE L2 2663 3089 -224 249 188 0 0 chr15 97418057 97418105 -3962416 + L2 LINE L2 3224 3271 -1 278 351 6 30 chr15 97418436 97418601 -3961920 + L2 LINE L2 2542 2702 -612 730 254 144 29 chr15 97418871 97419217 -3961304 + LTR16C LTR ERVL 83 468 -23 1930 131 26 3 chr15 97419232 97419537 -3960984 - AluJb SINE Alu 0 312 1 309 343 41 0 chr15 97419583 97419729 -3960792 + L2 LINE L2 3116 3267 -5 307 343 90 24 chr15 97419769 97419935 -3960586 + MIR SINE MIR 70 246 -16 392 176 54 14 chr15 97419935 97420009 -3960512 + MER7A DNA MER2_type 1 77 -271 1891 111 7 0 chr15 97420014 97420285 -3960236 + AluSq SINE Alu 1 273 -40 402 157 12 60 chr15 97420285 97420368 -3960153 + AluSp/q SINE Alu 219 297 -16 1075 195 45 45 chr15 97420373 97420640 -3959881 + L1MC2 LINE L1 6073 6339 -5 1711 154 40 0 chr15 97420645 97420918 -3959603 + MER7A DNA MER2_type 65 346 0 22 56 0 0 chr15 97421680 97421716 -3958805 + AT_rich Low_complexity Low_complexity 1 36 0 2131 117 0 0 chr15 97421889 97422197 -3958324 - AluSx SINE Alu -4 308 1 2435 108 100 5 chr15 97422334 97422723 -3957798 + MSTA LTR MaLR 1 426 -2 1773 134 51 3 chr15 97422754 97423046 -3957475 - AluSx SINE Alu -5 307 2 233 313 38 12 chr15 97423093 97423173 -3957348 + MLT1K LTR MaLR 2 83 -505 868 236 28 19 chr15 97423225 97423441 -3957080 + MLT1K LTR MaLR 364 581 -7 426 251 187 20 chr15 97423706 97423909 -3956612 + MIR SINE MIR 25 261 -1 335 283 0 9 chr15 97423924 97424030 -3956491 - MIR SINE MIR -17 245 141 200 278 0 19 chr15 97424035 97424089 -3956432 - MIR SINE MIR -37 225 173 216 135 0 0 chr15 97424876 97424913 -3955608 + (T)n Simple_repeat Simple_repeat 1 37 0 1683 71 46 0 chr15 97425729 97425968 -3954553 + AluSc SINE Alu 26 275 -34 2226 97 0 0 chr15 97426412 97426710 -3953811 + AluSx SINE Alu 10 307 -5 239 298 24 12 chr15 97427419 97427503 -3953018 - MIR SINE MIR -6 256 172 612 106 12 0 chr15 97427523 97427608 -3952913 - Tigger7 DNA MER2_type -4 2487 2402 * 2616 179 11 88 chr15 97427604 97427764 -3952757 - Tigger7 DNA MER2_type -1961 526 355 2015 119 13 7 chr15 97427764 97428066 -3952455 + AluJb SINE Alu 1 304 -8 327 104 0 0 chr15 97428066 97428114 -3952407 + (TA)n Simple_repeat Simple_repeat 2 49 0 2616 179 11 88 chr15 97428114 97428522 -3951999 - Tigger7 DNA MER2_type -2130 357 1 522 180 57 41 chr15 97428522 97428644 -3951877 - MIR SINE MIR -105 157 34 1623 138 0 12 chr15 97428821 97429075 -3951446 + AluSx SINE Alu 49 299 -13 228 67 0 0 chr15 97430528 97430558 -3949963 + (TG)n Simple_repeat Simple_repeat 1 30 0 34 42 0 0 chr15 97431017 97431065 -3949456 + AT_rich Low_complexity Low_complexity 1 48 0 1999 129 7 0 chr15 97431189 97431492 -3949029 - AluSx SINE Alu -7 305 1 693 167 12 74 chr15 97431884 97431897 -3948624 - L1PA12 LINE L1 -4686 2898 2886 2230 97 3 0 chr15 97431897 97432195 -3948326 - AluSg SINE Alu -11 299 1 693 167 12 74 chr15 97432195 97432378 -3948143 - L1PA12 LINE L1 -4698 2886 2713 1983 135 7 0 chr15 97432378 97432681 -3947840 - AluY SINE Alu 0 311 7 186 43 0 0 chr15 97432681 97432704 -3947817 + (TCCCC)n Simple_repeat Simple_repeat 2 24 0 970 175 12 0 chr15 97433632 97433803 -3946718 + MER5B DNA MER1_type 1 173 -5 2004 122 3 0 chr15 97433953 97434241 -3946280 - AluSx SINE Alu -23 289 1 5783 113 35 6 chr15 97434321 97435204 -3945317 - L1PA13 LINE L1 -1 6162 5254 2316 179 0 0 chr15 97435207 97435614 -3944907 - L1PA13 LINE L1 -913 5233 4827 1504 157 0 0 chr15 97435611 97435866 -3944655 + L1PA13 LINE L1 4581 4835 -1311 * 525 293 88 43 chr15 97435913 97436374 -3944147 - L1ME LINE L1 -511 5655 5217 1079 183 206 8 chr15 97436374 97436626 -3943895 - AluJo SINE Alu 0 302 1 525 293 88 43 chr15 97436626 97437271 -3943250 - L1ME LINE L1 -949 5217 4502 1542 251 62 32 chr15 97437551 97438117 -3942404 + L1ME3A LINE L1 4537 5125 -1021 2071 128 0 0 chr15 97438117 97438414 -3942107 + AluSx SINE Alu 1 297 -15 1542 251 62 32 chr15 97438414 97438480 -3942041 + L1ME3A LINE L1 5125 5188 -958 7400 171 41 27 chr15 97438481 97439995 -3940526 + L1MB7 LINE L1 3825 5390 -794 1963 145 0 22 chr15 97439995 97440306 -3940215 - AluSx SINE Alu -6 306 3 7400 171 41 27 chr15 97440306 97441094 -3939427 + L1MB7 LINE L1 5390 6165 -19 259 219 0 0 chr15 97441093 97441157 -3939364 + L1ME3A LINE L1 5170 5233 -913 * 2542 39 0 7 chr15 97441203 97441512 -3939009 + AluY SINE Alu 1 307 -4 1399 128 60 24 chr15 97441546 97441796 -3938725 + AluJb SINE Alu 1 259 -53 308 288 44 25 chr15 97441879 97442039 -3938482 + L1ME3A LINE L1 5262 5424 -740 905 242 29 5 chr15 97442155 97442422 -3938099 - L1ME3A LINE L1 -170 5994 5700 372 232 261 42 chr15 97442419 97442497 -3938024 + L1ME3A LINE L1 5869 5929 -241 * 447 19 0 0 chr15 97442497 97442549 -3937972 + (TG)n Simple_repeat Simple_repeat 2 53 0 1568 177 3 0 chr15 97442551 97442833 -3937688 - AluJb SINE Alu -29 283 1 372 232 261 42 chr15 97442833 97442992 -3937529 + L1ME3A LINE L1 5929 6162 -8 2176 113 0 19 chr15 97443419 97443737 -3936784 + AluSx SINE Alu 1 312 0 2191 102 0 3 chr15 97445532 97445835 -3934686 + AluSc SINE Alu 1 302 -7 759 142 0 0 chr15 97446004 97446117 -3934404 - FLAM_A SINE Alu -10 132 20 2014 123 0 0 chr15 97446323 97446615 -3933906 - AluSx SINE Alu -16 296 5 1559 198 175 71 chr15 97447581 97447953 -3932568 - MLT1F1 LTR MaLR 0 567 105 2025 109 28 0 chr15 97447953 97448236 -3932285 - AluSg SINE Alu -19 291 1 1559 198 175 71 chr15 97448236 97448354 -3932167 - MLT1F1 LTR MaLR -462 105 1 315 266 50 93 chr15 97448354 97448493 -3932028 - MIR3 SINE MIR -34 174 42 253 280 50 10 chr15 97448750 97448850 -3931671 - L2 LINE L2 -219 3053 2950 1913 124 7 16 chr15 97449392 97449699 -3930822 + AluSx SINE Alu 1 304 -8 313 229 110 18 chr15 97449853 97449962 -3930559 - MER112 DNA MER1_type -131 129 11 1646 124 18 14 chr15 97449974 97450249 -3930272 - AluJo SINE Alu -4 308 33 2113 136 7 0 chr15 97450323 97450618 -3929903 - AluSx SINE Alu -15 297 1 2562 55 0 0 chr15 97450679 97450970 -3929551 - AluY SINE Alu -20 291 1 374 291 57 7 chr15 97450970 97451111 -3929410 - L1ME1 LINE L1 -32 6134 5987 482 250 90 11 chr15 97451127 97451315 -3929206 - L2 LINE L2 -420 2894 2692 771 214 46 36 chr15 97451319 97451586 -3928935 + L1MC4a LINE L1 6419 6589 -1219 638 211 0 18 chr15 97451586 97451752 -3928769 - L1M4 LINE L1 -1585 4561 4399 2187 112 0 61 chr15 97451763 97452093 -3928428 - AluSx SINE Alu -2 310 1 1518 320 74 47 chr15 97452186 97453432 -3927089 + HERV16 LTR ERVL 102 1380 -3616 708 183 152 0 chr15 97453448 97453612 -3926909 - MER5A DNA MER1_type 0 189 1 350 304 10 0 chr15 97454021 97454123 -3926398 + HERV16 LTR ERVL 1952 2054 -2942 356 260 63 16 chr15 97454134 97454261 -3926260 - L2 LINE L2 -1045 2269 2137 248 347 41 0 chr15 97454353 97454451 -3926070 + L2 LINE L2 3204 3305 -8 364 227 55 0 chr15 97454917 97455018 -3925503 - MIR SINE MIR -44 218 112 469 298 60 0 chr15 97455292 97455460 -3925061 + MIR SINE MIR 50 227 -35 500 235 94 0 chr15 97455513 97455662 -3924859 + MER5A DNA MER1_type 16 178 -11 265 245 109 61 chr15 97455660 97455807 -3924714 - MIR SINE MIR -75 187 34 * 428 350 28 11 chr15 97456159 97456339 -3924182 + MER91A DNA MER1_type 3 185 -11 249 268 18 0 chr15 97456373 97456429 -3924092 + MER91A DNA MER1_type 134 190 0 2715 233 79 16 chr15 97457833 97458074 -3922447 + MER63C DNA MER1_type 120 344 -716 1863 173 10 19 chr15 97458074 97458387 -3922134 - AluJb SINE Alu -2 310 1 2715 233 79 16 chr15 97458387 97458908 -3921613 + MER63C DNA MER1_type 344 930 0 268 261 126 27 chr15 97458908 97459009 -3921512 + LTR33 LTR ERVL 101 212 -309 900 121 0 0 chr15 97460742 97460858 -3919663 - AluSg/x SINE Alu -132 180 65 736 119 9 0 chr15 97460867 97460976 -3919545 + AluSc SINE Alu 155 264 -45 272 186 0 0 chr15 97461000 97461043 -3919478 - Alu SINE Alu -264 44 2 308 117 20 7 chr15 97461043 97461105 -3919416 + MLT1I LTR MaLR 339 545 -4 2193 90 6 68 chr15 97461593 97461916 -3918605 - AluSc SINE Alu -6 303 1 2237 96 34 0 chr15 97462832 97463124 -3917397 + AluSq SINE Alu 1 302 -11 198 323 16 0 chr15 97463959 97464021 -3916500 + MIR SINE MIR 2 64 -198 424 271 91 45 chr15 97464588 97464787 -3915734 - MER63A DNA MER1_type 0 210 3 378 299 69 7 chr15 97465232 97465376 -3915145 - L2 LINE L2 0 3313 3161 233 352 56 44 chr15 97465432 97465682 -3914839 - L2 LINE L2 -13 3259 3007 392 236 70 45 chr15 97465836 97465993 -3914528 - L1ME4a LINE L1 -224 5897 5737 365 213 71 31 chr15 97465994 97466121 -3914400 + MIR SINE MIR 16 147 -115 1153 197 65 29 chr15 97466122 97466431 -3914090 + MER2 DNA MER2_type 1 320 -25 2115 87 0 4 chr15 97466460 97466726 -3913795 + AluSg SINE Alu 1 265 -45 304 287 104 9 chr15 97466731 97466846 -3913675 + MIR SINE MIR 137 262 0 295 282 57 8 chr15 97466891 97467015 -3913506 - L1ME4a LINE L1 -440 5681 5552 22 70 0 0 chr15 97467551 97467594 -3912927 + GC_rich Low_complexity Low_complexity 1 43 0 29 28 0 0 chr15 97468817 97468853 -3911668 + GC_rich Low_complexity Low_complexity 1 36 0 2129 108 6 19 chr15 97471048 97471389 -3909132 - AluSx SINE Alu 0 337 1 577 256 147 5 chr15 97471695 97471886 -3908635 - MIR SINE MIR -14 248 31 356 288 108 36 chr15 97472622 97472761 -3907760 + MIR SINE MIR 15 163 -99 275 224 28 112 chr15 97472778 97472885 -3907636 - L2 LINE L2 -1 3312 3215 728 243 61 19 chr15 97472892 97473186 -3907335 - L2 LINE L2 -375 2938 2578 204 97 0 0 chr15 97474173 97474204 -3906317 + (CATA)n Simple_repeat Simple_repeat 4 34 0 2120 127 6 19 chr15 97474599 97474914 -3905607 + AluSx SINE Alu 1 311 -1 2247 127 0 0 chr15 97475539 97475847 -3904674 - AluSx SINE Alu -4 308 1 226 324 202 0 chr15 97476789 97476937 -3903584 - MIR SINE MIR -15 247 58 1810 146 49 32 chr15 97476937 97477306 -3903215 - THE1C LTR MaLR 0 375 1 226 324 202 0 chr15 97477306 97477330 -3903191 - MIR SINE MIR -204 58 40 232 282 236 10 chr15 97477778 97477973 -3902548 - MIR SINE MIR 0 262 24 2180 126 10 0 chr15 97478249 97478608 -3901913 - AluSx SINE Alu 0 362 1 383 260 79 39 chr15 97479195 97479292 -3901229 - MLT1K LTR MaLR -1 587 482 2194 175 26 17 chr15 97479292 97479515 -3901006 - MSTB LTR MaLR 0 426 196 2280 101 0 29 chr15 97479515 97479822 -3900699 - AluSg SINE Alu -12 298 1 2194 175 26 17 chr15 97479822 97480020 -3900501 - MSTB LTR MaLR -230 196 1 383 260 79 39 chr15 97480020 97480049 -3900472 - MLT1K LTR MaLR -106 482 456 231 246 309 18 chr15 97480175 97480285 -3900236 - MLT1K LTR MaLR -357 231 90 210 155 17 35 chr15 97481498 97481556 -3898965 + A-rich Low_complexity Low_complexity 3 59 0 213 373 39 0 chr15 97481970 97482072 -3898449 - MER5B DNA MER1_type -68 110 5 229 263 25 75 chr15 97482101 97482181 -3898340 + MER5A DNA MER1_type 30 105 -84 216 258 90 22 chr15 97482881 97482970 -3897551 - MIR SINE MIR -122 140 46 234 312 112 0 chr15 97483121 97483246 -3897275 - L2 LINE L2 -249 3064 2926 2013 150 0 10 chr15 97485365 97485671 -3894850 + AluJb SINE Alu 1 303 -9 663 300 91 0 chr15 97485841 97486051 -3894470 - MIR SINE MIR -2 260 32 276 308 56 9 chr15 97487501 97487608 -3892913 + MIR SINE MIR 36 147 -115 342 0 0 0 chr15 97490815 97490853 -3889668 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 514 188 59 0 chr15 97497690 97497791 -3882730 + MER81 DNA DNA 8 114 0 180 0 0 0 chr15 97498021 97498041 -3882480 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 1637 180 67 9 chr15 97498159 97498504 -3882017 - MLT1A2 LTR MaLR -8 366 2 2252 121 3 0 chr15 97500101 97500408 -3880113 - AluSx SINE Alu -4 308 1 779 269 80 62 chr15 97501787 97502174 -3878347 + L1ME3A LINE L1 4670 5048 -1114 1984 118 7 3 chr15 97502174 97502461 -3878060 - AluSx SINE Alu -24 288 1 779 269 80 62 chr15 97502461 97502974 -3877547 + L1ME3A LINE L1 5048 5596 -566 234 135 39 19 chr15 97502974 97503044 -3877477 + (TATG)n Simple_repeat Simple_repeat 1 71 0 231 302 0 23 chr15 97503045 97503174 -3877347 + L1ME3A LINE L1 5834 5959 -211 336 271 31 10 chr15 97505586 97505682 -3874839 + L2 LINE L2 3175 3272 0 306 287 78 78 chr15 97507003 97507296 -3873225 - L2 LINE L2 -12 3301 3009 182 103 0 26 chr15 97507350 97507389 -3873132 + (TGG)n Simple_repeat Simple_repeat 2 39 0 291 169 0 0 chr15 97507444 97507515 -3873006 + CT-rich Low_complexity Low_complexity 1 71 0 195 329 24 24 chr15 97507947 97508032 -3872489 - L3 LINE CR1 -1202 375 291 2060 113 10 0 chr15 97508713 97509004 -3871517 - AluSx SINE Alu -18 294 1 2443 57 0 0 chr15 97509018 97509314 -3871207 - AluY SINE Alu -15 296 1 2129 110 0 0 chr15 97509878 97510170 -3870351 + AluSg SINE Alu 1 292 -18 1572 199 105 27 chr15 97510170 97510542 -3869979 + MLT1F1 LTR MaLR 167 567 0 2054 121 0 16 chr15 97511508 97511821 -3868700 + AluSx SINE Alu 5 312 0 759 142 0 0 chr15 97512002 97512115 -3868406 + FLAM_A SINE Alu 20 132 -10 1195 125 0 0 chr15 97512284 97512460 -3868061 - AluSc SINE Alu -7 302 127 717 146 27 0 chr15 97512561 97512671 -3867850 - AluSq/x SINE Alu -198 114 2 2510 47 0 0 chr15 97512686 97512985 -3867536 - AluY SINE Alu -12 299 1 2251 101 0 0 chr15 97513541 97513848 -3866673 + AluSg SINE Alu 1 307 -3 210 286 37 99 chr15 97515707 97515868 -3864653 + L2 LINE L2 2630 2780 -534 1700 182 19 29 chr15 97515871 97516245 -3864276 - MER58D DNA MER1_type -16 370 1 307 43 64 0 chr15 97517285 97517332 -3863189 + AluSq/x SINE Alu 83 132 -171 430 333 35 40 chr15 97517333 97517434 -3863087 + MIR SINE MIR 58 159 -103 2740 130 16 23 chr15 97517434 97517823 -3862698 + MSTA LTR MaLR 1 388 -40 2044 95 23 16 chr15 97517823 97518127 -3862394 - AluSx SINE Alu -6 306 1 2740 130 16 23 chr15 97518127 97518168 -3862353 + MSTA LTR MaLR 388 428 0 430 333 35 40 chr15 97518168 97518264 -3862257 + MIR SINE MIR 159 254 -8 1862 142 10 3 chr15 97518267 97518555 -3861966 - AluSx SINE Alu -22 290 1 353 323 23 23 chr15 97518702 97518832 -3861689 + L2 LINE L2 3141 3270 -2 321 293 118 45 chr15 97519020 97519717 -3860804 + L1M4 LINE L1 2927 3674 -2472 1748 184 99 6 chr15 97519776 97520108 -3860413 + MSTD LTR MaLR 1 363 -33 1671 314 37 28 chr15 97520151 97521257 -3859264 + L1M4 LINE L1 3881 4996 -1150 2466 119 36 0 chr15 97521874 97522236 -3858285 - THE1C LTR MaLR 0 375 1 401 326 42 0 chr15 97522432 97522576 -3857945 - MIR SINE MIR -70 192 43 180 0 0 0 chr15 97522588 97522608 -3857913 + (T)n Simple_repeat Simple_repeat 1 20 0 2110 117 0 0 chr15 97522669 97522968 -3857553 - AluSx SINE Alu -13 299 1 524 234 129 6 chr15 97524352 97524523 -3855998 + MER91A DNA MER1_type 4 195 -1 725 310 143 20 chr15 97524911 97525447 -3855074 - L2 LINE L2 -192 3080 2479 1297 158 5 0 chr15 97525887 97526096 -3854425 - MER2 DNA MER2_type -134 211 2 228 163 0 0 chr15 97526096 97526139 -3854382 + (TATG)n Simple_repeat Simple_repeat 1 43 0 2292 74 3 7 chr15 97526192 97526491 -3854030 + AluSg1 SINE Alu 1 298 -11 273 258 21 21 chr15 97526551 97526644 -3853877 - L1MC4 LINE L1 -1339 6703 6611 251 301 60 24 chr15 97527060 97527143 -3853378 + L2 LINE L2 3187 3272 0 497 306 47 29 chr15 97527828 97528103 -3852418 + L1MEd LINE L1 59 338 -5781 1163 227 186 109 chr15 97528103 97528257 -3852264 + MLT1E2 LTR MaLR 1 142 -512 1625 158 29 41 chr15 97528257 97528595 -3851926 + AluJb SINE Alu 1 312 0 1163 227 186 109 chr15 97528595 97529048 -3851473 + MLT1E2 LTR MaLR 142 654 0 2087 176 22 6 chr15 97529053 97529412 -3851109 + MLT1A1 LTR MaLR 1 365 0 1306 190 9 0 chr15 97529625 97529846 -3850675 - MER58A DNA MER1_type 0 224 2 249 240 0 0 chr15 97529972 97530022 -3850499 + L2 LINE L2 2276 2325 -989 307 284 45 52 chr15 97530085 97530219 -3850302 - L1 LINE L1 -2839 3307 3175 632 288 135 9 chr15 97530331 97530560 -3849961 + MIR SINE MIR 2 259 -3 1997 173 24 23 chr15 97533178 97533761 -3846760 - L1M1 LINE L1 -708 5592 5016 1063 243 17 20 chr15 97533761 97534062 -3846459 - AluJo SINE Alu 0 302 3 1997 173 24 23 chr15 97534062 97534167 -3846354 - L1M1 LINE L1 -1284 5016 4913 1863 149 3 7 chr15 97534654 97534955 -3845566 + AluJb SINE Alu 1 300 -12 193 288 14 68 chr15 97535232 97535305 -3845216 - L2 LINE L2 0 3313 3245 240 339 73 0 chr15 97535387 97535496 -3845025 + L2 LINE L2 588 704 -2610 365 243 54 0 chr15 97535783 97535894 -3844627 - LTR33 LTR ERVL -401 120 4 7772 106 7 1 chr15 97536319 97537354 -3843167 + THE1B-int LTR MaLR 540 1580 0 2286 127 22 19 chr15 97537354 97537717 -3842804 + THE1B LTR MaLR 1 364 0 905 132 0 7 chr15 97537798 97537934 -3842587 + AluSx SINE Alu 3 137 -175 4133 53 6 0 chr15 97538034 97538542 -3841979 - THE1B-int LTR MaLR -1057 523 13 1639 116 12 31 chr15 97538548 97538806 -3841715 - THE1B LTR MaLR 0 364 112 1711 162 0 17 chr15 97539199 97539496 -3841025 + AluJb SINE Alu 6 297 -15 367 197 11 129 chr15 97539630 97539690 -3840831 - L1MC4 LINE L1 -72 7970 7905 186 103 0 0 chr15 97539690 97539719 -3840802 + (CATA)n Simple_repeat Simple_repeat 4 32 0 367 197 11 129 chr15 97539719 97539836 -3840685 - L1MC4 LINE L1 -137 7905 7814 1208 115 0 0 chr15 97539836 97540001 -3840520 + AluSx SINE Alu 129 293 -17 363 349 108 20 chr15 97540105 97540449 -3840072 - L2 LINE L2 -510 2804 2431 1979 73 8 0 chr15 97540806 97541065 -3839456 - AluSx SINE Alu -13 299 39 1926 144 75 3 chr15 97541093 97541426 -3839095 - L1MC1 LINE L1 -13 6320 5964 3680 184 16 41 chr15 97541426 97542016 -3838505 - L1MC1 LINE L1 -739 5594 5051 2026 119 10 0 chr15 97542016 97542319 -3838202 - AluSp SINE Alu -7 306 1 3680 184 16 41 chr15 97542319 97542834 -3837687 - L1MC1 LINE L1 -1282 5051 4525 555 133 0 12 chr15 97542948 97543031 -3837490 - AluSp/q SINE Alu -16 297 216 2247 62 3 7 chr15 97543131 97543423 -3837098 - AluY SINE Alu -20 291 1 580 183 9 26 chr15 97543424 97543539 -3836982 + AluJo/FRAM SINE Alu 190 302 -10 1402 236 76 20 chr15 97543551 97544000 -3836521 + L1ME3A LINE L1 5455 5928 -242 1600 164 55 10 chr15 97544641 97544934 -3835587 - AluJo SINE Alu -6 306 1 294 95 0 0 chr15 97545347 97545389 -3835132 + (CA)n Simple_repeat Simple_repeat 1 42 0 825 158 15 8 chr15 97545662 97545795 -3834726 + AluSq/x SINE Alu 6 139 -174 463 255 98 38 chr15 97545795 97545979 -3834542 + MIR SINE MIR 32 226 -36 2138 112 26 0 chr15 97546254 97546558 -3833963 - AluSx SINE Alu 0 312 1 205 179 0 89 chr15 97548103 97548159 -3832362 + MIR SINE MIR 47 97 -111 274 257 133 19 chr15 97550573 97550678 -3829843 + MIR SINE MIR 128 244 -18 2329 74 0 29 chr15 97550742 97551051 -3829470 - AluSc SINE Alu -9 300 1 2009 114 0 0 chr15 97551202 97551465 -3829056 - AluSx SINE Alu -15 297 35 686 237 75 44 chr15 97551704 97551932 -3828589 + MIR SINE MIR 5 239 -23 210 253 11 69 chr15 97551952 97552039 -3828482 - MIR SINE MIR -62 200 119 481 222 149 32 chr15 97552410 97552489 -3828032 + Charlie8 DNA MER1_type 30 98 -243 1579 185 26 23 chr15 97552489 97552797 -3827724 + AluJo SINE Alu 1 309 -3 481 222 149 32 chr15 97552797 97552938 -3827583 + Charlie8 DNA MER1_type 98 276 -65 2007 118 0 0 chr15 97554894 97555156 -3825365 + AluSx SINE Alu 3 264 -48 1360 168 92 23 chr15 97555256 97555560 -3824961 + MLT2C1 LTR ERVL 10 334 -63 1014 128 0 0 chr15 97555564 97555705 -3824816 + FLAM_C SINE Alu 1 141 -2 273 29 0 0 chr15 97555725 97555759 -3824762 + (TG)n Simple_repeat Simple_repeat 2 35 0 305 130 0 0 chr15 97555759 97555805 -3824716 + MLT2C1 LTR ERVL 352 397 0 26 0 0 0 chr15 97556392 97556418 -3824103 + AT_rich Low_complexity Low_complexity 1 26 0 725 312 101 0 chr15 97556520 97556738 -3823783 + MIR SINE MIR 2 241 -21 645 291 85 35 chr15 97556856 97557455 -3823066 + L1ME4a LINE L1 5490 6118 -3 1066 204 52 0 chr15 97558246 97558457 -3822064 + MER58A DNA MER1_type 3 224 0 27 0 0 0 chr15 97559592 97559619 -3820902 + AT_rich Low_complexity Low_complexity 1 27 0 1363 203 12 3 chr15 97559619 97559939 -3820582 - L1MA4 LINE L1 -9 6291 5969 6772 177 24 18 chr15 97560041 97561525 -3818996 - L1 LINE L1 -1780 4366 2875 477 298 82 38 chr15 97561523 97561924 -3818597 + L1ME3A LINE L1 5004 5386 -784 * 2104 106 11 3 chr15 97561924 97562207 -3818314 + AluSx SINE Alu 1 285 -27 477 298 82 38 chr15 97562207 97562695 -3817826 + L1ME3A LINE L1 5386 5946 -224 203 146 24 0 chr15 97562698 97562739 -3817782 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 28 48 0 0 chr15 97563157 97563199 -3817322 + AT_rich Low_complexity Low_complexity 1 42 0 564 302 33 41 chr15 97563924 97564169 -3816352 + MIR SINE MIR 15 257 -5 26 39 0 20 chr15 97564175 97564200 -3816321 + AT_rich Low_complexity Low_complexity 1 25 -25 1636 149 3 71 chr15 97564200 97564508 -3816013 - AluJb SINE Alu -25 287 1 26 39 0 20 chr15 97564508 97564533 -3815988 + AT_rich Low_complexity Low_complexity 25 50 0 311 319 19 10 chr15 97564999 97565206 -3815315 + L1ME3A LINE L1 2798 3006 -3140 491 326 84 27 chr15 97565219 97565667 -3814854 + L1ME3A LINE L1 5067 5550 -743 250 341 84 11 chr15 97565755 97566039 -3814482 + L1ME3A LINE L1 5622 5929 -241 2378 97 0 6 chr15 97566039 97566350 -3814171 - AluSg SINE Alu -1 309 1 217 347 0 0 chr15 97567150 97567222 -3813299 + G-rich Low_complexity Low_complexity 3 74 0 647 283 155 0 chr15 97569205 97569431 -3811090 + MIR SINE MIR 2 262 0 390 271 35 100 chr15 97569508 97569678 -3810843 + MIR3 SINE MIR 18 176 -32 284 318 35 65 chr15 97569767 97569937 -3810584 - MIR SINE MIR -31 231 67 722 318 67 16 chr15 97570122 97570437 -3810084 + MLT1K LTR MaLR 218 548 -40 207 0 0 0 chr15 97570597 97570620 -3809901 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 419 288 34 34 chr15 97571031 97571208 -3809313 - L2 LINE L2 -4 3309 3133 228 67 0 0 chr15 97571349 97571379 -3809142 + (TG)n Simple_repeat Simple_repeat 1 30 0 1205 137 0 44 chr15 97571379 97571584 -3808937 - AluJb SINE Alu -31 281 86 2346 89 0 0 chr15 97571807 97572109 -3808412 + AluY SINE Alu 1 302 -9 685 215 131 65 chr15 97572120 97572306 -3808215 + MLT1G1 LTR MaLR 24 196 -399 1828 161 15 63 chr15 97572306 97572716 -3807805 + MLT1B LTR MaLR 1 390 0 685 215 131 65 chr15 97572716 97572978 -3807543 + MLT1G1 LTR MaLR 196 595 0 807 294 124 2 chr15 97573311 97573841 -3806680 - L1ME4a LINE L1 -5 6116 5522 233 229 71 0 chr15 97573957 97574027 -3806494 - L1P LINE L1 -742 5409 5335 316 266 0 0 chr15 97574437 97574501 -3806020 - MIR3 SINE MIR -17 191 128 3307 234 82 7 chr15 97574501 97575526 -3804995 + L1MC4 LINE L1 6803 7947 -95 242 136 0 0 chr15 97575532 97575576 -3804945 + L1MC4 LINE L1 7999 8042 0 506 327 143 11 chr15 97575594 97576032 -3804489 + L2 LINE L2 2698 3205 -67 526 215 0 0 chr15 97576071 97576178 -3804343 - MER105 DNA DNA -97 107 1 185 273 36 0 chr15 97576178 97576233 -3804288 + L2 LINE L2 3215 3271 -1 621 314 58 92 chr15 97576245 97577207 -3803314 + L2 LINE L2 2348 3271 -1 446 221 84 0 chr15 97577334 97577429 -3803092 + L2 LINE L2 3200 3302 -11 387 182 36 9 chr15 97578018 97578128 -3802393 + (CATA)n Simple_repeat Simple_repeat 4 116 0 189 195 0 0 chr15 97578210 97578251 -3802270 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 3348 244 74 32 chr15 97578360 97580050 -3800471 + L1MEc LINE L1 37 1835 -4561 2834 142 27 23 chr15 97580067 97580587 -3799934 + Tigger3b DNA MER2_type 18 539 -692 1267 46 0 7 chr15 97580588 97580741 -3799780 - AluY SINE Alu -16 295 144 322 243 68 34 chr15 97580930 97581078 -3799443 - L1ME4a LINE L1 -900 5246 5094 * 1411 218 25 128 chr15 97581077 97581138 -3799383 + L1ME1 LINE L1 5578 5644 -518 2372 107 0 0 chr15 97581138 97581437 -3799084 - AluSq SINE Alu -14 299 1 1411 218 25 128 chr15 97581437 97581971 -3798550 + L1ME1 LINE L1 5644 6115 -47 2271 105 3 10 chr15 97582109 97582423 -3798098 - AluSx SINE Alu 0 312 1 183 283 94 0 chr15 97582436 97582489 -3798032 - L2 LINE L2 -2 3270 3213 259 189 89 22 chr15 97582965 97583055 -3797466 + MER103 DNA DNA 66 161 -5 2182 125 0 10 chr15 97583357 97583669 -3796852 + AluSg SINE Alu 1 309 -1 23 0 0 0 chr15 97583670 97583693 -3796828 + AT_rich Low_complexity Low_complexity 1 23 0 366 241 90 45 chr15 97583993 97584126 -3796395 - MIR SINE MIR -56 206 68 503 241 41 47 chr15 97584578 97584748 -3795773 + Charlie8 DNA MER1_type 85 253 -2164 295 219 0 27 chr15 97584991 97585064 -3795457 - HsTC2 DNA Tc2 -1822 76 6 1951 95 15 7 chr15 97585189 97585463 -3795058 + AluSp SINE Alu 1 276 -37 257 0 30 0 chr15 97585467 97585500 -3795021 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 1724 166 13 13 chr15 97586010 97586317 -3794204 + AluJb SINE Alu 4 310 -2 1873 222 32 6 chr15 97586455 97586959 -3793562 + L1 LINE L1 3441 3957 -2189 1080 197 0 0 chr15 97586998 97587231 -3793290 + L1 LINE L1 4986 5218 -928 859 202 35 42 chr15 97587703 97587964 -3792557 - L1ME LINE L1 -555 5611 5351 2780 16 0 0 chr15 97588346 97588650 -3791871 - AluYb8 SINE Alu -14 304 1 2185 129 3 0 chr15 97590343 97590646 -3789875 - AluSx SINE Alu -8 304 1 35 0 0 0 chr15 97590762 97590797 -3789724 + AT_rich Low_complexity Low_complexity 1 35 0 2105 120 0 0 chr15 97591964 97592247 -3788274 - AluSx SINE Alu -29 283 1 1256 72 12 18 chr15 97593513 97593680 -3786841 - AluSq SINE Alu -23 290 125 192 77 0 0 chr15 97595455 97595481 -3785040 + (CAG)n Simple_repeat Simple_repeat 1 26 0 429 338 41 15 chr15 97595540 97595880 -3784641 + L1MEc LINE L1 357 705 -6016 2016 156 48 11 chr15 97595890 97596242 -3784279 + MLT1A1 LTR MaLR 1 365 0 1135 252 67 44 chr15 97596257 97596913 -3783608 + L1MEc LINE L1 1371 2103 -4479 462 206 224 0 chr15 97596913 97597020 -3783501 + FLAM_C SINE Alu 1 131 -2 1135 252 67 44 chr15 97597020 97597058 -3783463 + L1MEc LINE L1 2103 2139 -4443 291 28 0 0 chr15 97597066 97597102 -3783419 + (T)n Simple_repeat Simple_repeat 1 36 0 4045 170 38 28 chr15 97598001 97598193 -3782328 + L1MB5 LINE L1 4947 5135 -1039 2071 134 0 7 chr15 97598193 97598512 -3782009 + AluSx SINE Alu 1 312 0 2210 117 3 0 chr15 97598515 97598806 -3781715 + AluSc SINE Alu 1 292 -17 4045 170 38 28 chr15 97598806 97599823 -3780698 + L1MB5 LINE L1 5136 6166 -8 775 128 61 37 chr15 97600248 97600389 -3780132 + MER3 DNA MER1_type 19 166 -43 2127 111 31 0 chr15 97600389 97600677 -3779844 + AluSq SINE Alu 1 297 -16 775 128 61 37 chr15 97600677 97600699 -3779822 + MER3 DNA MER1_type 166 186 -23 187 269 164 10 chr15 97602056 97602160 -3778361 + MIR3 SINE MIR 86 205 -3 22 0 0 0 chr15 97603021 97603043 -3777478 + AT_rich Low_complexity Low_complexity 1 22 0 520 271 49 7 chr15 97603189 97603333 -3777188 + MIR SINE MIR 112 261 -1 328 300 147 0 chr15 97603413 97603583 -3776938 - L1ME LINE L1 -443 5678 5484 616 117 64 0 chr15 97603607 97603701 -3776820 - FLAM_A SINE Alu -13 129 30 240 191 235 0 chr15 97603728 97603843 -3776678 - L1ME LINE L1 -2337 5471 5330 206 311 0 0 chr15 97604274 97604319 -3776202 - MIR SINE MIR -60 148 104 448 328 211 17 chr15 97604547 97605300 -3775221 + L2 LINE L2 770 1668 -1646 218 227 0 15 chr15 97605315 97605381 -3775140 + A-rich Low_complexity Low_complexity 5 69 0 1013 258 112 8 chr15 97605736 97606093 -3774428 + LTR10D LTR ERV1 120 513 0 247 295 98 54 chr15 97606207 97606319 -3774202 + L2 LINE L2 3195 3311 -2 239 293 107 0 chr15 97606434 97606509 -3774012 - L2 LINE L2 -40 3232 3150 1964 141 3 32 chr15 97606751 97607064 -3773457 - AluJb SINE Alu -8 304 1 1865 97 62 0 chr15 97607626 97607907 -3772614 + AluSg SINE Alu 22 318 0 3559 172 92 8 chr15 97608756 97609855 -3770666 - L1MB7 LINE L1 -66 6118 4929 * 3790 201 124 65 chr15 97609826 97610775 -3769746 - L1MB7 LINE L1 -1570 4576 3685 1570 186 7 20 chr15 97610775 97611070 -3769451 - AluJo SINE Alu -21 291 1 3790 201 124 65 chr15 97611070 97611827 -3768694 - L1MB7 LINE L1 -2461 3685 2769 5321 202 123 43 chr15 97611860 97612156 -3768365 - L1M4c LINE L1 -3873 2952 2681 836 149 0 22 chr15 97612156 97612290 -3768231 - FLAM_C SINE Alu 0 133 3 5321 202 123 43 chr15 97612290 97614485 -3766036 - L1M4c LINE L1 -4144 2681 140 2272 81 0 3 chr15 97615047 97615331 -3765190 - AluSx SINE Alu -21 291 9 22 0 0 0 chr15 97617389 97617411 -3763110 + AT_rich Low_complexity Low_complexity 1 22 0 2601 23 0 0 chr15 97617814 97618113 -3762408 + AluYa5 SINE Alu 1 299 -12 585 279 134 44 chr15 97619870 97620303 -3760218 + LTR33 LTR ERVL 50 521 0 276 361 81 8 chr15 97620953 97621213 -3759308 + ERVL LTR ERVL 815 1093 -4671 670 290 30 21 chr15 97621687 97622015 -3758506 + L1MDa LINE L1 19 349 -6191 * 807 165 53 45 chr15 97621984 97622227 -3758294 + L1MB8 LINE L1 6328 6572 0 * 825 177 53 152 chr15 97622221 97622713 -3757808 + L1M4 LINE L1 2489 2931 -3215 567 68 0 0 chr15 97622721 97622794 -3757727 + L1PA5 LINE L1 11 83 -6063 37803 54 6 3 chr15 97622794 97628624 -3751897 + L1PA5 LINE L1 297 6140 -14 449 274 32 5 chr15 97628632 97628818 -3751703 + L1M4 LINE L1 2928 3118 -3028 4516 221 46 90 chr15 97628821 97630207 -3750314 + L1M4 LINE L1 2778 4037 -2109 2223 98 25 0 chr15 97630207 97630493 -3750028 + AluY SINE Alu 1 293 -18 4516 221 46 90 chr15 97630493 97631244 -3749277 + L1M4 LINE L1 4037 4820 -1326 409 225 65 7 chr15 97631280 97631418 -3749103 + L1M4 LINE L1 5062 5207 -939 1611 91 68 8 chr15 97631516 97631780 -3748741 + L1MA2 LINE L1 6025 6304 0 34 0 0 0 chr15 97631783 97631817 -3748704 + AT_rich Low_complexity Low_complexity 1 34 0 2557 99 11 16 chr15 97632044 97632419 -3748102 + THE1C LTR MaLR 3 375 0 205 371 0 0 chr15 97633319 97633381 -3747140 + L2 LINE L2 3204 3265 -7 977 86 43 0 chr15 97634054 97634193 -3746328 - AluSg/x SINE Alu -14 298 154 28 0 0 0 chr15 97634207 97634235 -3746286 + AT_rich Low_complexity Low_complexity 1 28 0 227 159 58 58 chr15 97634269 97634338 -3746183 - L1ME4a LINE L1 -99 6022 5954 212 294 0 15 chr15 97634348 97634416 -3746105 + (TA)n Simple_repeat Simple_repeat 1 67 0 239 322 0 0 chr15 97634757 97634816 -3745705 + (CATA)n Simple_repeat Simple_repeat 1 59 0 433 216 175 6 chr15 97634968 97635105 -3745416 + MIR SINE MIR 4 157 -51 2023 148 61 10 chr15 97635402 97635793 -3744728 + MLT2C2 LTR ERVL 6 416 -48 4633 186 115 42 chr15 97635808 97637073 -3743448 + MSTD-int LTR MaLR 2 1358 -13 3844 201 40 29 chr15 97637073 97637538 -3742983 + MER21B LTR ERV1 1 482 -381 1714 189 67 13 chr15 97637538 97637914 -3742607 + MSTD LTR MaLR 1 396 0 3844 201 40 29 chr15 97637914 97638290 -3742231 + MER21B LTR ERV1 482 852 -11 1846 148 0 104 chr15 97638316 97638393 -3742128 + MLT1B LTR MaLR 1 84 -306 1383 206 91 9 chr15 97638393 97638732 -3741789 + MLT1A2 LTR MaLR 4 370 -4 1846 148 0 104 chr15 97638732 97639085 -3741436 + MLT1B LTR MaLR 84 386 -4 672 276 29 0 chr15 97640341 97640511 -3740010 - MIR SINE MIR 0 262 88 21 0 0 0 chr15 97642241 97642262 -3738259 + AT_rich Low_complexity Low_complexity 1 21 0 658 94 0 0 chr15 97643473 97643569 -3736952 + L1MB3 LINE L1 6080 6175 -8 191 231 0 0 chr15 97644688 97644727 -3735794 - L2 LINE L2 -10 3262 3224 286 327 73 69 chr15 97644802 97645062 -3735459 - L2 LINE L2 -181 3091 2831 228 156 0 0 chr15 97645400 97645445 -3735076 - L1MC/D LINE L1 -2238 5738 5694 395 324 95 32 chr15 97645618 97646090 -3734431 - L1MC/D LINE L1 -637 5467 4934 2085 124 14 0 chr15 97646090 97646381 -3734140 - AluSx SINE Alu -17 295 1 395 324 95 32 chr15 97646381 97646514 -3734007 - L1MC/D LINE L1 -1170 4934 4811 227 282 12 0 chr15 97646560 97646645 -3733876 - L1MC/D LINE L1 -1318 4762 4677 281 271 23 31 chr15 97647026 97647155 -3733366 - L1MC/D LINE L1 -1812 4268 4141 26 0 0 0 chr15 97647303 97647329 -3733192 + AT_rich Low_complexity Low_complexity 1 26 0 826 228 175 7 chr15 97647481 97647784 -3732737 - L1ME3A LINE L1 -17 6153 5800 278 250 121 32 chr15 97647785 97647909 -3732612 - L1ME3A LINE L1 -416 5754 5620 1200 251 117 39 chr15 97648246 97649216 -3731305 - L1ME LINE L1 -4649 1431 413 720 232 17 26 chr15 97649681 97649879 -3730642 + MLT1F LTR MaLR 1 237 -358 228 170 19 38 chr15 97650191 97650244 -3730277 - L1MDa LINE L1 -5018 1522 1471 399 344 21 3 chr15 97650400 97650604 -3729917 + L2 LINE L2 3005 3267 -5 410 132 26 0 chr15 97652379 97652455 -3728066 + L1MA9 LINE L1 6230 6307 -5 2625 139 65 46 chr15 97652987 97653463 -3727058 + MER31A LTR ERV1 1 485 0 1563 176 16 35 chr15 97654081 97654394 -3726127 + AluJb SINE Alu 5 311 -1 216 273 0 0 chr15 97654577 97654621 -3725900 - L2 LINE L2 -43 3270 3227 1057 267 55 47 chr15 97654862 97655012 -3725509 - L1ME3A LINE L1 -773 5373 5226 2897 10 0 0 chr15 97655012 97655323 -3725198 - AluYb8 SINE Alu -7 311 1 1057 267 55 47 chr15 97655323 97655842 -3724679 - L1ME3A LINE L1 -920 5226 4907 2018 177 23 14 chr15 97655988 97656417 -3724104 + L1 LINE L1 4236 4668 -1478 2108 203 63 34 chr15 97656552 97657172 -3723349 - L1ME3A LINE L1 -1503 4643 4006 6368 121 39 12 chr15 97657198 97658285 -3722236 - L1MA3 LINE L1 0 6305 5190 4441 183 55 14 chr15 97658385 97659555 -3720966 + L1MA9 LINE L1 4746 5993 -319 2208 67 11 3 chr15 97659555 97659838 -3720683 + AluY SINE Alu 18 302 -9 4441 183 55 14 chr15 97659838 97660133 -3720388 + L1MA9 LINE L1 5993 6274 -38 21 0 0 0 chr15 97660239 97660260 -3720261 + AT_rich Low_complexity Low_complexity 1 21 0 645 190 73 28 chr15 97660436 97660615 -3719906 + MER96B DNA MER1_type? 148 334 -83 312 246 31 0 chr15 97660633 97660698 -3719823 + FLAM SINE Alu 57 123 -10 1352 159 25 97 chr15 97660703 97660856 -3719665 + AluJo SINE Alu 1 121 -191 291 54 0 0 chr15 97660856 97660893 -3719628 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 1352 159 25 97 chr15 97660893 97661059 -3719462 + AluJo SINE Alu 121 297 -15 665 169 39 0 chr15 97661489 97661619 -3718902 + L1M LINE L1 5266 5400 -912 335 181 282 60 chr15 97661802 97661951 -3718570 + MIR SINE MIR 4 185 -77 413 299 97 24 chr15 97662691 97662898 -3717623 + MIR SINE MIR 34 255 -7 247 247 143 13 chr15 97664383 97664460 -3716061 - L2 LINE L2 -37 3235 3149 353 229 200 49 chr15 97664479 97664669 -3715852 - MIR SINE MIR -16 246 34 2476 78 0 3 chr15 97665653 97665961 -3714560 + AluSx SINE Alu 1 307 -5 23 54 0 0 chr15 97667036 97667073 -3713448 + AT_rich Low_complexity Low_complexity 1 37 0 1980 107 54 0 chr15 97667316 97667596 -3712925 - AluSx SINE Alu -17 295 1 183 42 0 0 chr15 97669144 97669168 -3711353 + (CAT)n Simple_repeat Simple_repeat 2 25 0 705 252 53 68 chr15 97670639 97670905 -3709616 + MIR SINE MIR 1 262 0 1125 166 0 0 chr15 97671371 97671534 -3708987 - FAM SINE Alu -12 163 1 340 347 33 42 chr15 97671613 97671826 -3708695 - MIR SINE MIR -41 221 11 23 54 0 0 chr15 97671864 97671901 -3708620 + AT_rich Low_complexity Low_complexity 1 37 0 28 29 0 0 chr15 97671969 97672004 -3708517 + AT_rich Low_complexity Low_complexity 1 35 0 342 0 0 0 chr15 97672604 97672642 -3707879 + (CA)n Simple_repeat Simple_repeat 2 39 0 1095 197 49 10 chr15 97674328 97674531 -3705990 + MER58C DNA MER1_type 5 215 0 22 35 0 0 chr15 97674556 97674585 -3705936 + AT_rich Low_complexity Low_complexity 1 29 0 720 160 0 0 chr15 97674884 97674984 -3705537 - AluJ/FLAM SINE Alu -212 100 1 2313 221 67 23 chr15 97675010 97675654 -3704867 - L1MC4 LINE L1 -312 7730 7059 1034 264 53 73 chr15 97675701 97676390 -3704131 - L1MC4 LINE L1 -747 5399 5173 * 5180 162 33 27 chr15 97676359 97677939 -3702582 - L1MB7 LINE L1 0 6184 4592 207 0 0 0 chr15 97677939 97677962 -3702559 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5180 162 33 27 chr15 97677962 97678304 -3702217 - L1MB7 LINE L1 -1592 4592 4253 268 369 0 0 chr15 97678536 97678620 -3701901 + MIR SINE MIR 29 112 -150 189 308 0 19 chr15 97679437 97679489 -3701032 + MIR SINE MIR 31 81 -181 2248 114 99 6 chr15 97679725 97680068 -3700453 - THE1C LTR MaLR 0 375 1 10988 111 38 12 chr15 97680068 97681242 -3699279 - THE1C-int LTR MaLR 0 1580 354 2184 92 3 55 chr15 97681242 97681567 -3698954 + AluY SINE Alu 1 308 -3 10988 111 38 12 chr15 97681567 97681931 -3698590 - THE1C-int LTR MaLR -1226 354 1 418 243 103 54 chr15 97682064 97682249 -3698272 - HAL1b LINE L1 0 1348 1155 389 250 38 31 chr15 97682348 97682508 -3698013 + L1M LINE L1 5265 5425 -2383 360 0 0 0 chr15 97682589 97682629 -3697892 + (TG)n Simple_repeat Simple_repeat 1 40 0 252 0 0 0 chr15 97682628 97682656 -3697865 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 253 254 30 147 chr15 97683477 97683674 -3696847 - L3 LINE CR1 -75 1502 1329 411 324 76 22 chr15 97683696 97683921 -3696600 + MIR SINE MIR 20 256 -6 220 203 34 34 chr15 97683988 97684047 -3696474 - L3 LINE CR1 -322 1255 1197 21 0 0 0 chr15 97684521 97684542 -3695979 + AT_rich Low_complexity Low_complexity 1 21 0 2106 122 3 0 chr15 97685541 97685829 -3694692 + AluSx SINE Alu 1 289 -23 949 175 12 0 chr15 97685979 97686150 -3694371 - MER5B DNA MER1_type -5 173 1 1001 237 84 50 chr15 97687244 97687722 -3692799 - MLT2B1 LTR ERVL 0 520 166 565 248 47 0 chr15 97687804 97687953 -3692568 + MER103 DNA DNA 2 157 -9 270 282 71 12 chr15 97688019 97688104 -3692417 + L2 LINE L2 3169 3258 -14 1151 231 131 19 chr15 97688381 97688740 -3691781 + LTR16C LTR ERVL 77 475 -16 575 265 31 98 chr15 97688962 97689314 -3691207 - L2 LINE L2 -37 3235 2915 1284 217 66 30 chr15 97689551 97689883 -3690638 + MLT1I LTR MaLR 63 406 -3 471 277 0 57 chr15 97689920 97690079 -3690442 + MIR SINE MIR 1 150 -112 1116 156 22 49 chr15 97690082 97690306 -3690215 + AluJo SINE Alu 86 303 -9 387 187 24 89 chr15 97690311 97690365 -3690156 + MIR SINE MIR 148 204 -58 2384 89 0 0 chr15 97690365 97690667 -3689854 + AluSq SINE Alu 1 302 -11 387 187 24 89 chr15 97690667 97690735 -3689786 + MIR SINE MIR 204 262 0 2330 109 0 0 chr15 97691166 97691477 -3689044 + AluSx SINE Alu 1 311 -1 260 260 104 0 chr15 97691491 97691568 -3688953 - Charlie8 DNA MER1_type -2306 111 27 2238 110 0 10 chr15 97692311 97692619 -3687902 - AluSq SINE Alu -8 305 1 223 288 14 27 chr15 97692639 97692712 -3687809 + MIR SINE MIR 86 157 -105 2243 107 0 17 chr15 97693705 97694005 -3686516 - AluSx SINE Alu -17 295 1 366 194 0 0 chr15 97694268 97694335 -3686186 - L1MB5 LINE L1 0 6174 6108 202 194 0 0 chr15 97694335 97694371 -3686150 - MIR SINE MIR -110 152 117 222 307 193 11 chr15 97694432 97694520 -3686001 + L2 LINE L2 3169 3272 0 464 226 49 0 chr15 97694815 97694917 -3685604 + MIR SINE MIR 62 168 -94 2464 58 14 0 chr15 97695060 97695353 -3685168 - AluY SINE Alu -14 297 1 303 339 58 8 chr15 97696134 97696255 -3684266 + MIR SINE MIR 27 153 -109 1829 170 3 6 chr15 97696360 97696671 -3683850 - AluJb SINE Alu -2 310 1 22 0 0 0 chr15 97697437 97697459 -3683062 + AT_rich Low_complexity Low_complexity 1 22 0 2387 104 0 3 chr15 97697483 97697792 -3682729 - AluSx SINE Alu -4 308 1 2927 6 0 0 chr15 97697804 97698116 -3682405 - AluYb8 SINE Alu -6 312 1 23 54 0 0 chr15 97698495 97698532 -3681989 + AT_rich Low_complexity Low_complexity 1 37 0 2020 145 7 0 chr15 97698788 97699085 -3681436 + AluSx SINE Alu 1 299 -13 2141 123 0 13 chr15 97699090 97699400 -3681121 + AluSc SINE Alu 3 308 -1 2184 106 3 3 chr15 97701341 97701653 -3678868 + AluSx SINE Alu 1 312 0 216 411 0 0 chr15 97702796 97702964 -3677557 + (TGG)n Simple_repeat Simple_repeat 1 168 0 220 286 119 0 chr15 97703500 97703584 -3676937 + MER5B DNA MER1_type 6 99 -79 541 216 325 5 chr15 97703626 97703820 -3676701 + MIR SINE MIR 7 262 0 405 183 5 42 chr15 97703976 97704130 -3676391 + L1ME LINE L1 5519 7875 -120 867 92 0 0 chr15 97704136 97704256 -3676265 - AluSg/x SINE Alu -10 302 183 1344 145 0 14 chr15 97704434 97704648 -3675873 + AluJo SINE Alu 85 295 -17 467 295 52 48 chr15 97704648 97705207 -3675314 + L1MB7 LINE L1 1066 1626 -4758 1272 231 47 7 chr15 97705235 97705812 -3674709 + L1MB7 LINE L1 5245 5842 -743 1548 258 72 23 chr15 97705816 97706343 -3674178 + L1M4 LINE L1 10 562 -5980 1494 172 4 4 chr15 97706345 97706618 -3673903 + L1MB7 LINE L1 5960 6232 -188 1387 267 34 24 chr15 97706625 97707017 -3673504 + MLT1E LTR MaLR 144 589 -4 249 275 0 0 chr15 97707064 97707133 -3673388 + L1M4 LINE L1 4020 4088 -2058 2210 95 11 0 chr15 97707135 97707419 -3673102 + AluSq SINE Alu 3 289 -24 797 279 48 18 chr15 97707434 97707875 -3672646 + L1M4 LINE L1 4075 4528 -1618 235 187 73 73 chr15 97707861 97707984 -3672537 + L1MC4 LINE L1 7813 7935 -107 * 467 246 14 81 chr15 97708157 97708368 -3672153 + L1MC4 LINE L1 7845 8041 -1 359 286 83 24 chr15 97708510 97708678 -3671843 + HAL1 LINE L1 2225 2402 -105 323 102 20 0 chr15 97709315 97709364 -3671157 - MER1A DNA MER1_type 0 533 484 2858 119 35 5 chr15 97709466 97709893 -3670628 - MER1A DNA MER1_type -89 440 1 1000 243 58 4 chr15 97709951 97710210 -3670311 + MLT1C LTR MaLR 195 467 0 347 349 109 38 chr15 97710235 97710582 -3669939 + L1M4 LINE L1 632 1003 -5631 184 351 13 93 chr15 97710782 97710933 -3669588 - L2 LINE L2 -217 3055 2917 194 345 21 70 chr15 97711284 97711426 -3669095 - L2 LINE L2 -464 2850 2716 2483 68 0 3 chr15 97712205 97712513 -3668008 + AluY SINE Alu 1 307 -4 620 224 50 0 chr15 97713869 97714030 -3666491 + L1M4 LINE L1 1604 1772 -4874 * 1305 249 75 17 chr15 97714024 97714687 -3665834 + L1M4 LINE L1 2490 3137 -3507 10861 160 38 16 chr15 97714687 97716685 -3663836 - Ricksha_c DNA DNA -13 2033 42 3243 206 57 58 chr15 97716694 97717564 -3662957 + L1M4 LINE L1 3106 3976 -2668 2114 113 20 10 chr15 97717564 97717864 -3662657 + AluSx SINE Alu 1 303 -9 3243 206 57 58 chr15 97717864 97718190 -3662331 + L1M4 LINE L1 3976 4301 -2343 308 264 91 8 chr15 97718475 97718596 -3661925 + L2 LINE L2 3141 3271 -1 22 35 0 0 chr15 97718690 97718719 -3661802 + AT_rich Low_complexity Low_complexity 1 29 0 528 301 63 40 chr15 97718860 97719162 -3661359 + L2 LINE L2 2526 2834 -480 2770 209 63 36 chr15 97719168 97720002 -3660519 + L1M4 LINE L1 4294 5150 -1494 1176 223 95 12 chr15 97720547 97720883 -3659638 + Tigger7 DNA MER2_type 1 2491 0 248 373 92 20 chr15 97720983 97721136 -3659385 + MIR SINE MIR 25 188 -74 290 273 91 8 chr15 97722090 97722211 -3658310 + L2 LINE L2 3141 3271 -1 680 315 98 40 chr15 97722469 97723208 -3657313 + L2 LINE L2 2521 3313 0 240 310 108 13 chr15 97723598 97723756 -3656765 - MARNA DNA Mariner -20 566 394 383 270 0 10 chr15 97723776 97723876 -3656645 + MARNA DNA Mariner 323 421 -165 24 32 0 0 chr15 97724770 97724801 -3655720 + AT_rich Low_complexity Low_complexity 1 31 0 1955 84 4 15 chr15 97724826 97725088 -3655433 + AluSq SINE Alu 1 259 -54 278 25 0 25 chr15 97725097 97725137 -3655384 + (TAAAA)n Simple_repeat Simple_repeat 3 41 0 21 57 0 0 chr15 97726163 97726198 -3654323 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr15 97726494 97726518 -3654003 + AT_rich Low_complexity Low_complexity 1 24 0 319 209 23 47 chr15 97726863 97726949 -3653572 + MLT1A1 LTR MaLR 1 84 -281 2238 96 3 0 chr15 97726949 97727241 -3653280 + AluSp SINE Alu 1 293 -20 30 27 0 0 chr15 97727241 97727278 -3653243 + AT_rich Low_complexity Low_complexity 1 37 0 1461 207 24 10 chr15 97727278 97727568 -3652953 + MLT1A1 LTR MaLR 72 365 0 209 343 0 0 chr15 97728912 97729020 -3651501 + CT-rich Low_complexity Low_complexity 1 108 0 251 257 0 0 chr15 97730333 97730407 -3650114 + CT-rich Low_complexity Low_complexity 2 75 0 29 0 0 0 chr15 97733409 97733438 -3647083 + AT_rich Low_complexity Low_complexity 1 29 0 1880 155 7 7 chr15 97733521 97733831 -3646690 - AluJo SINE Alu -2 310 1 195 226 38 19 chr15 97733970 97734023 -3646498 + MIR SINE MIR 100 153 -109 243 323 48 32 chr15 97734162 97734286 -3646235 - MIR SINE MIR -120 142 17 180 357 57 14 chr15 97734691 97734761 -3645760 + MIR3 SINE MIR 85 157 -51 775 252 153 58 chr15 97734839 97735439 -3645082 + L2 LINE L2 2312 2968 -346 2352 78 0 0 chr15 97735487 97735780 -3644741 + AluSx SINE Alu 3 295 -17 263 239 45 0 chr15 97735951 97736018 -3644503 + L2 LINE L2 3159 3228 -44 789 94 0 0 chr15 97736031 97736137 -3644384 + L1PA10 LINE L1 6048 6153 -15 231 284 91 11 chr15 97736257 97736345 -3644176 - MIR SINE MIR -74 188 94 269 121 22 99 chr15 97737416 97737507 -3643014 + (CGGGG)n Simple_repeat Simple_repeat 3 86 0 275 286 50 31 chr15 97737887 97738048 -3642473 - MIR SINE MIR -45 217 54 425 227 83 15 chr15 97740991 97741123 -3639398 - L1MB7 LINE L1 -9 6175 6035 2971 181 24 67 chr15 97741165 97741973 -3638548 - L1MB7 LINE L1 -106 6078 5237 2014 101 0 11 chr15 97741973 97742296 -3638225 - AluSg SINE Alu 0 325 6 2971 181 24 67 chr15 97742296 97742312 -3638209 - L1MB7 LINE L1 -947 5237 5222 2304 92 0 3 chr15 97742312 97742606 -3637915 - AluSg SINE Alu -17 293 1 2971 181 24 67 chr15 97742606 97742807 -3637714 - L1MB7 LINE L1 -962 5222 5098 231 221 171 43 chr15 97743298 97743438 -3637083 - MER103 DNA DNA -1 165 8 827 219 20 15 chr15 97743746 97743942 -3636579 + AluJo SINE Alu 108 304 -8 502 188 107 0 chr15 97744856 97744968 -3635553 - FRAM SINE Alu -12 164 41 24 32 0 0 chr15 97745554 97745585 -3634936 + AT_rich Low_complexity Low_complexity 1 31 0 1661 182 29 4 chr15 97746300 97746610 -3633911 - AluJb SINE Alu 0 317 1 249 244 9 43 chr15 97746697 97746812 -3633709 + L1M4 LINE L1 47 157 -6385 615 254 51 5 chr15 97747011 97747208 -3633313 + L1M4 LINE L1 2005 2210 -4615 1719 214 62 66 chr15 97747218 97747922 -3632599 - L1MEc LINE L1 -3400 2815 2113 3232 133 49 6 chr15 97747930 97748463 -3632058 + Tigger3b DNA MER2_type 1 556 -675 1389 148 19 0 chr15 97748465 97748675 -3631846 + Tigger3b DNA MER2_type 1018 1231 0 282 292 64 29 chr15 97748693 97748864 -3631657 - L1MEc LINE L1 -4272 2124 1948 1057 199 16 52 chr15 97748948 97748987 -3631534 + L1M4 LINE L1 3197 3236 -3408 655 218 97 53 chr15 97748987 97749193 -3631328 - MER58C DNA MER1_type 0 215 1 1057 199 16 52 chr15 97749193 97749460 -3631061 + L1M4 LINE L1 3236 3492 -3152 3692 144 19 0 chr15 97749460 97750023 -3630498 + Tigger4(Zombi) DNA MER2_type 25 598 -2133 332 247 119 54 chr15 97750023 97750872 -3629649 - L1MC4 LINE L1 -411 7631 6696 2334 75 0 0 chr15 97751070 97751362 -3629159 + AluSg SINE Alu 5 296 -14 1111 144 57 16 chr15 97751859 97752053 -3628468 + MLT1E LTR MaLR 392 593 0 1706 154 3 24 chr15 97752085 97752378 -3628143 - AluJo SINE Alu -15 297 11 249 250 125 54 chr15 97752477 97752589 -3627932 + MIR SINE MIR 20 139 -69 751 301 47 44 chr15 97752656 97752952 -3627569 + L2 LINE L2 2531 2827 -487 1177 435 0 3 chr15 97756026 97756327 -3624194 + AluSg SINE Alu 1 300 0 563 121 35 52 chr15 97756359 97756475 -3624046 + L1MB7 LINE L1 5152 5265 -881 995 231 32 5 chr15 97756491 97756707 -3623814 - MER58A DNA MER1_type 0 224 3 1269 202 70 43 chr15 97756714 97756907 -3623614 + LTR37A LTR ERV1 46 232 -194 2114 111 0 3 chr15 97756907 97757205 -3623316 - AluSq SINE Alu -16 297 1 1269 202 70 43 chr15 97757205 97757382 -3623139 + LTR37A LTR ERV1 232 426 0 2868 207 130 7 chr15 97757382 97758197 -3622324 + L1MB7 LINE L1 5261 6175 -9 943 115 0 51 chr15 97758208 97758364 -3622157 + AluSg/x SINE Alu 140 287 -23 2163 74 0 11 chr15 97758429 97758757 -3621764 + AluY SINE Alu 1 325 0 1874 226 71 20 chr15 97758757 97759319 -3621202 - L1M4 LINE L1 -818 5328 4738 941 222 25 29 chr15 97759385 97759628 -3620893 - L1M4 LINE L1 -2032 4114 3873 417 222 130 12 chr15 97759619 97759781 -3620740 - L1M4 LINE L1 -2694 3452 3272 * 3761 128 52 5 chr15 97759777 97760606 -3619915 - L1MA8 LINE L1 -42 6249 5327 1017 70 0 0 chr15 97760610 97760739 -3619782 - AluSg/x SINE Alu -16 294 166 184 277 153 44 chr15 97761238 97761375 -3619146 + MIR SINE MIR 78 229 -33 336 64 0 0 chr15 97761400 97761447 -3619074 + (TG)n Simple_repeat Simple_repeat 1 47 0 * 396 0 0 0 chr15 97761446 97761490 -3619031 + (GA)n Simple_repeat Simple_repeat 1 44 0 584 302 0 0 chr15 97761545 97761704 -3618817 - MER46C DNA MER2_type 0 338 180 238 336 147 7 chr15 97762348 97762491 -3618030 - MIR SINE MIR -90 172 10 569 223 8 8 chr15 97763625 97763746 -3616775 + Tigger7 DNA MER2_type 619 739 -1748 28 0 0 0 chr15 97763768 97763796 -3616725 + AT_rich Low_complexity Low_complexity 1 28 0 2175 68 6 22 chr15 97763820 97764131 -3616390 - AluY SINE Alu -5 306 1 1190 287 63 44 chr15 97764148 97764676 -3615845 - L2 LINE L2 0 3313 2778 6310 161 29 57 chr15 97765059 97766249 -3614272 + MER52A LTR ERV1 599 1755 0 6803 159 36 37 chr15 97767138 97768353 -3612168 + L1M1 LINE L1 19 1232 -6333 267 309 204 30 chr15 97768563 97768764 -3611757 + MIR SINE MIR 21 256 -6 959 217 8 43 chr15 97768766 97769024 -3611497 + AluJo SINE Alu 41 289 -23 189 196 0 0 chr15 97769198 97769244 -3611277 + (TAGG)n Simple_repeat Simple_repeat 2 47 0 7493 46 0 1 chr15 97769465 97770414 -3610107 + L1PA7 LINE L1 5203 6150 -4 1531 178 146 6 chr15 97771184 97771505 -3609016 + MER47A DNA MER2_type 1 366 0 483 230 148 79 chr15 97771645 97771923 -3608598 - MLT1F1 LTR MaLR -179 388 92 315 273 234 12 chr15 97772090 97772346 -3608175 + LTR50 LTR ERVL 480 792 -3 23704 47 7 5 chr15 97772786 97776603 -3603918 - L1PA8 LINE L1 0 6172 2417 1535 141 4 4 chr15 97776608 97776842 -3603679 - L1P LINE L1 -5493 653 420 4248 133 23 16 chr15 97777099 97777800 -3602721 - L1PA15 LINE L1 0 6165 5460 437 111 63 0 chr15 97777803 97777866 -3602655 + AluS SINE Alu 2 68 -243 379 278 83 31 chr15 97778419 97778735 -3601786 - MLT1H LTR MaLR -13 536 136 257 257 69 40 chr15 97778963 97779064 -3601457 + L2 LINE L2 3209 3312 -1 2211 101 0 7 chr15 97779280 97779586 -3600935 + AluSq SINE Alu 1 304 -9 2268 38 0 21 chr15 97779586 97779898 -3600623 + AluY SINE Alu 1 306 0 2422 72 0 0 chr15 97780897 97781201 -3599320 + AluSc SINE Alu 1 304 -5 520 243 176 29 chr15 97781314 97781532 -3598989 - MIR SINE MIR -2 260 21 310 281 52 88 chr15 97782075 97782324 -3598197 - MLT1K LTR MaLR -192 396 157 2015 125 0 25 chr15 97782726 97783045 -3597476 - AluSx SINE Alu -1 311 1 2150 100 0 7 chr15 97783368 97783667 -3596854 - AluSq SINE Alu -16 297 1 187 267 244 15 chr15 97784822 97784957 -3595564 - MIR SINE MIR -75 187 22 1974 106 3 3 chr15 97786263 97786597 -3593924 - AluSp SINE Alu 0 334 1 219 330 25 68 chr15 97787476 97787522 -3592999 + L2 LINE L2 3154 3200 -72 2467 166 14 20 chr15 97787522 97788010 -3592511 + MER31A LTR ERV1 1 485 0 219 330 25 68 chr15 97788010 97788081 -3592440 + L2 LINE L2 3200 3266 -6 282 260 208 12 chr15 97789005 97789178 -3591343 - MER20B DNA MER1_type -576 207 1 415 204 43 0 chr15 97789426 97789519 -3591002 - L1MB7 LINE L1 -30 6154 6058 223 381 61 7 chr15 97789655 97789802 -3590719 + L2 LINE L2 3116 3270 -2 1544 103 0 5 chr15 97789947 97790170 -3590351 - AluSg/x SINE Alu -6 304 83 2320 135 36 14 chr15 97791499 97791855 -3588666 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr15 97792175 97792198 -3588323 + AT_rich Low_complexity Low_complexity 1 23 0 2081 91 0 11 chr15 97792205 97792490 -3588031 + AluSx SINE Alu 1 282 -30 192 40 0 0 chr15 97792490 97792515 -3588006 + (TTAAA)n Simple_repeat Simple_repeat 2 26 0 2122 113 3 0 chr15 97793293 97793585 -3586936 - AluSq SINE Alu -10 303 11 422 117 0 0 chr15 97794238 97794298 -3586223 + AluS SINE Alu 2 61 -248 1815 176 13 8 chr15 97794400 97794775 -3585746 - L1P LINE L1 -979 5167 4791 226 279 16 16 chr15 97795534 97795595 -3584926 + MLT1K LTR MaLR 528 588 0 343 226 123 31 chr15 97795807 97796068 -3584453 - LTR16C LTR ERVL -68 423 139 334 272 136 24 chr15 97796200 97796325 -3584196 + MIR SINE MIR 117 255 -7 208 246 31 138 chr15 97798029 97798159 -3582362 - MIR3 SINE MIR -52 156 41 223 339 0 15 chr15 97799197 97799262 -3581259 + L2 LINE L2 3189 3252 -20 192 257 0 0 chr15 97799294 97799364 -3581157 + (TGGG)n Simple_repeat Simple_repeat 3 72 0 1054 130 0 31 chr15 97799991 97800153 -3580368 + AluSx SINE Alu 1 157 -155 299 247 22 11 chr15 97800205 97800294 -3580227 + (TA)n Simple_repeat Simple_repeat 1 90 0 1893 170 60 20 chr15 97800331 97800732 -3579789 + L1MA7 LINE L1 5637 6053 -238 628 179 0 16 chr15 97800736 97800859 -3579662 - FLAM_C SINE Alu -10 133 13 1040 189 22 0 chr15 97800871 97801098 -3579423 + L1MA7 LINE L1 6056 6287 -4 578 305 67 16 chr15 97801331 97801646 -3578875 + MLT1I LTR MaLR 72 402 -7 2273 108 13 0 chr15 97801979 97802286 -3578235 + AluSp SINE Alu 3 313 0 432 283 28 39 chr15 97802791 97802971 -3577550 - MIR SINE MIR -4 258 81 411 270 122 43 chr15 97803957 97804302 -3576219 - LTR16B LTR ERVL -2 462 91 529 276 41 67 chr15 97805831 97806099 -3574422 + L2 LINE L2 3052 3312 -1 186 295 0 13 chr15 97806358 97806436 -3574085 + MER5A DNA MER1_type 20 96 -93 260 298 96 0 chr15 97808193 97808297 -3572224 + MIR3 SINE MIR 84 197 -11 551 200 10 10 chr15 97810925 97811025 -3569496 - L2 LINE L2 0 3313 3214 321 253 36 0 chr15 97811137 97811220 -3569301 - MER5A DNA MER1_type -80 109 24 * 462 296 53 0 chr15 97811203 97811355 -3569166 + MIR SINE MIR 25 184 -78 192 77 0 0 chr15 97811360 97811386 -3569135 + (T)n Simple_repeat Simple_repeat 1 26 0 392 280 31 42 chr15 97811714 97811901 -3568620 + MIR SINE MIR 1 178 -58 317 280 21 105 chr15 97812338 97812481 -3568040 + MIR3 SINE MIR 41 171 -37 330 181 72 0 chr15 97812629 97812712 -3567809 + MER53 DNA DNA 101 189 0 22 0 0 0 chr15 97813197 97813219 -3567302 + AT_rich Low_complexity Low_complexity 1 22 0 2257 117 0 22 chr15 97815003 97815319 -3565202 - AluSx SINE Alu -3 309 1 2275 126 0 0 chr15 97815838 97816147 -3564374 - AluSx SINE Alu -2 310 2 348 195 241 0 chr15 97816149 97816236 -3564285 - MIR SINE MIR -113 149 42 228 35 0 0 chr15 97817355 97817384 -3563137 + (TTTTG)n Simple_repeat Simple_repeat 5 33 0 1721 144 25 14 chr15 97817384 97817661 -3562860 - AluSx SINE Alu -32 280 1 394 264 195 6 chr15 97817667 97817826 -3562695 + MER5A DNA MER1_type 1 189 0 264 274 11 21 chr15 97817884 97817979 -3562542 + Charlie4 DNA MER1_type 1865 1958 -3 1484 203 79 9 chr15 97819755 97820095 -3560426 - MLT1B LTR MaLR -26 364 1 2024 94 36 18 chr15 97820338 97820613 -3559908 - AluSx SINE Alu -16 296 17 360 263 246 0 chr15 97820677 97820795 -3559726 - MIR SINE MIR -93 169 23 699 299 74 56 chr15 97821029 97821585 -3558936 + L1MC4a LINE L1 5260 5825 -1983 2107 119 0 18 chr15 97821587 97821918 -3558603 + AluSx SINE Alu 1 326 0 774 158 15 108 chr15 97822120 97822323 -3558198 - MER5A DNA MER1_type -4 185 2 23 33 0 0 chr15 97822363 97822393 -3558128 + AT_rich Low_complexity Low_complexity 1 30 0 182 286 52 26 chr15 97823548 97823625 -3556896 - MIR SINE MIR -102 160 82 322 281 91 30 chr15 97824397 97824596 -3555925 + MLT1J LTR MaLR 235 445 -66 455 287 10 56 chr15 97825146 97825341 -3555180 + MER5A DNA MER1_type 3 188 -1 551 260 2 2 chr15 97825507 97825652 -3554869 + MER5B DNA MER1_type 22 166 -23 754 178 41 7 chr15 97825716 97825862 -3554659 - MER5A DNA MER1_type -38 151 1 422 193 328 31 chr15 97826990 97827182 -3553339 + L2 LINE L2 2223 2471 -843 261 0 0 0 chr15 97827207 97827236 -3553285 + (T)n Simple_repeat Simple_repeat 1 29 0 7002 162 54 71 chr15 97828746 97829914 -3550607 + L1MDa LINE L1 412 1598 -4617 2304 128 0 3 chr15 97829914 97830226 -3550295 + AluSx SINE Alu 1 311 -1 7002 162 54 71 chr15 97830226 97830674 -3549847 + L1MDa LINE L1 1598 1994 -4221 2245 105 3 7 chr15 97830674 97830970 -3549551 + AluSq SINE Alu 1 295 -18 7002 162 54 71 chr15 97830970 97831217 -3549304 + L1MDa LINE L1 1994 2244 -3971 1489 121 54 0 chr15 97831226 97831465 -3549056 - L1PA15 LINE L1 0 6165 5914 373 105 0 0 chr15 97831565 97831622 -3548899 + FLAM_A SINE Alu 74 130 -3 2043 136 0 16 chr15 97832550 97832888 -3547633 - AluSq SINE Alu 0 313 1 702 185 58 29 chr15 97832888 97833093 -3547428 + L1MDa LINE L1 1834 2044 -4352 204 200 0 0 chr15 97833105 97833150 -3547371 + (TA)n Simple_repeat Simple_repeat 2 46 0 255 208 115 31 chr15 97833151 97833281 -3547240 + L1MDa LINE L1 2032 2172 -4224 6538 117 5 22 chr15 97833355 97834782 -3545739 - L1MA4A LINE L1 -9 6294 4891 456 238 61 14 chr15 97834782 97834929 -3545592 + L1MDa LINE L1 2258 2411 -3985 1867 195 32 27 chr15 97834929 97835401 -3545120 + MER68 LTR ERV1 1 549 -13 1187 244 13 3 chr15 97835409 97835717 -3544804 + L1MDa LINE L1 2368 2678 -3537 2067 113 32 0 chr15 97835719 97836001 -3544520 - AluSx SINE Alu -21 291 1 708 211 68 0 chr15 97836011 97836248 -3544273 + L1MDa LINE L1 2860 3112 -3103 349 183 73 0 chr15 97836251 97836333 -3544188 + L1MB5 LINE L1 4852 4939 -1207 22 35 0 0 chr15 97836881 97836910 -3543611 + AT_rich Low_complexity Low_complexity 1 29 0 1876 148 0 36 chr15 97836990 97837295 -3543226 + AluJo SINE Alu 1 294 -18 1991 144 0 43 chr15 97837327 97837653 -3542868 + AluJb SINE Alu 1 312 0 796 338 17 51 chr15 97838183 97838535 -3541986 - L2 LINE L2 0 3272 2933 2167 90 3 37 chr15 97838559 97838858 -3541663 - AluSx SINE Alu -23 289 1 519 305 53 11 chr15 97839160 97839350 -3541171 - MIR SINE MIR -17 245 48 2020 232 86 30 chr15 97839678 97840380 -3540141 - MER20B DNA MER1_type -7 776 36 207 204 102 0 chr15 97840396 97840445 -3540076 - MIR SINE MIR -26 236 183 338 317 96 55 chr15 97840462 97840774 -3539747 - L2 LINE L2 -7 3306 2982 4379 173 13 10 chr15 97840914 97840950 -3539571 + L1MB5 LINE L1 5336 5370 -804 2111 137 0 0 chr15 97840950 97841249 -3539272 + AluSx SINE Alu 1 299 -13 4379 173 13 10 chr15 97841249 97842048 -3538473 + L1MB5 LINE L1 5370 6174 0 245 257 0 14 chr15 97842838 97842908 -3537613 - LTR33A LTR ERVL -7 516 448 2043 105 32 41 chr15 97845883 97846198 -3534323 - AluSx SINE Alu 0 312 1 257 155 39 47 chr15 97846335 97846402 -3534119 - MIR SINE MIR -41 167 97 406 234 15 36 chr15 97847537 97847856 -3532665 - MLT1K LTR MaLR -340 248 128 21 57 0 0 chr15 97848086 97848121 -3532400 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr15 97848977 97849000 -3531521 + AT_rich Low_complexity Low_complexity 1 23 0 328 268 189 33 chr15 97849450 97849603 -3530918 - MER5A DNA MER1_type -6 183 7 719 221 73 15 chr15 97849658 97849696 -3530825 - L1M1 LINE L1 -594 5562 5528 2414 185 43 12 chr15 97849696 97849737 -3530784 - L1PB4 LINE L1 -4 6152 6114 413 87 145 0 chr15 97849737 97849806 -3530715 + MADE1 DNA Mariner 2 80 0 2414 185 43 12 chr15 97849806 97850219 -3530302 - L1PB4 LINE L1 -42 6114 5679 2059 136 7 3 chr15 97850219 97850514 -3530007 - AluSx SINE Alu -16 296 1 2414 185 43 12 chr15 97850514 97850550 -3529971 - L1PB4 LINE L1 -477 5679 5646 719 221 73 15 chr15 97850550 97850690 -3529831 - L1M1 LINE L1 -628 5528 5419 29 28 0 0 chr15 97850690 97850726 -3529795 + AT_rich Low_complexity Low_complexity 1 36 0 1882 176 23 0 chr15 97850748 97851050 -3529471 - AluJb SINE Alu -3 309 1 512 234 85 54 chr15 97854190 97854582 -3525939 + LTR67 LTR ERVL 82 544 -13 2153 125 0 26 chr15 97856315 97856626 -3523895 - AluSx SINE Alu -5 307 5 256 344 21 0 chr15 97856695 97856791 -3523730 + MIR3 SINE MIR 65 162 -46 827 168 128 25 chr15 97856835 97857031 -3523490 - MLT1F LTR MaLR -212 336 148 2729 214 100 35 chr15 97858886 97859418 -3521103 + L1ME2 LINE L1 5260 5869 -295 2147 130 0 0 chr15 97859418 97859711 -3520810 - AluSx SINE Alu -14 298 6 2729 214 100 35 chr15 97859711 97860028 -3520493 + L1ME2 LINE L1 5869 6164 0 6007 100 231 90 chr15 97861536 97863022 -3517499 + pTR5 LTR ERV1 743 2438 0 2245 98 7 0 chr15 97863285 97863581 -3516940 + AluY SINE Alu 1 298 -13 1638 196 34 22 chr15 97864951 97865309 -3515212 + MLT1A1 LTR MaLR 4 365 0 2179 128 20 0 chr15 97865952 97866258 -3514263 + AluSx SINE Alu 1 312 0 710 279 95 53 chr15 97866259 97866860 -3513661 + L1MEc LINE L1 810 1435 -4961 2558 177 61 2 chr15 97866928 97867296 -3513225 + MLT1D LTR MaLR 3 407 -98 2186 117 17 0 chr15 97867296 97867586 -3512935 - AluSx SINE Alu -17 295 1 2558 177 61 2 chr15 97867586 97867692 -3512829 + MLT1D LTR MaLR 407 505 0 2390 66 66 3 chr15 97867836 97868154 -3512367 - L1PB1 LINE L1 -7 6144 5807 267 132 0 0 chr15 97868584 97868637 -3511884 - L1MB4 LINE L1 -2 6178 6126 1749 88 0 4 chr15 97868647 97868874 -3511647 - AluSq SINE Alu -83 230 5 45 0 0 0 chr15 97868874 97868919 -3511602 + AT_rich Low_complexity Low_complexity 1 45 0 731 185 5 85 chr15 97868921 97869110 -3511411 - FAM SINE Alu 0 49 1 998 184 14 18 chr15 97869111 97869328 -3511193 - L1MB3 LINE L1 -52 6131 5916 22 0 0 0 chr15 97869813 97869835 -3510686 + AT_rich Low_complexity Low_complexity 1 22 0 191 35 0 35 chr15 97870702 97870731 -3509790 + (TTCTC)n Simple_repeat Simple_repeat 5 32 0 2032 129 0 66 chr15 97871719 97872051 -3508470 - AluSx SINE Alu -2 310 1 667 276 122 23 chr15 97872283 97872504 -3508017 - MIR SINE MIR 0 262 20 443 211 28 126 chr15 97872612 97872704 -3507817 - Charlie8 DNA MER1_type -107 223 124 1664 102 9 0 chr15 97872704 97872920 -3507601 + AluSg/x SINE Alu 72 289 -21 443 211 28 126 chr15 97872920 97872975 -3507546 - Charlie8 DNA MER1_type -206 124 65 2211 107 13 16 chr15 97872975 97873285 -3507236 + AluSg SINE Alu 1 309 -1 443 211 28 126 chr15 97873285 97873383 -3507138 - Charlie8 DNA MER1_type -265 65 1 649 249 23 12 chr15 97873392 97873565 -3506956 + MER117 DNA MER1_type 2 176 -21 1708 209 84 8 chr15 97874019 97874387 -3506134 + MSTD LTR MaLR 1 396 0 466 259 62 0 chr15 97874923 97875035 -3505486 - L2 LINE L2 0 3313 3195 271 327 93 0 chr15 97875236 97875343 -3505178 + MIR SINE MIR 80 196 -66 503 277 45 58 chr15 97876268 97876681 -3503840 - MLT1J2 LTR MaLR -3 406 2 561 266 95 0 chr15 97877349 97877507 -3503014 - MIR SINE MIR -6 256 84 379 365 0 0 chr15 97877531 97877649 -3502872 + MIR SINE MIR 50 166 -67 1649 212 91 51 chr15 97877656 97877855 -3502666 + MLT1G LTR MaLR 14 204 -386 1735 142 51 110 chr15 97877855 97878265 -3502256 + MLT1B LTR MaLR 5 390 0 1649 212 91 51 chr15 97878265 97878617 -3501904 + MLT1G LTR MaLR 204 587 -3 785 241 35 37 chr15 97878975 97879230 -3501291 + MIR SINE MIR 11 262 0 319 277 0 0 chr15 97880841 97880924 -3499597 + MIR SINE MIR 50 132 -130 198 234 52 0 chr15 97881114 97881191 -3499330 - L2 LINE L2 -1204 2110 2030 2367 89 0 22 chr15 97883229 97883545 -3496976 + AluSg1 SINE Alu 1 309 0 1567 222 87 9 chr15 97884296 97884643 -3495878 + MLT1A2 LTR MaLR 1 374 0 2455 196 49 16 chr15 97884648 97884680 -3495841 - MLT2B2 LTR ERVL -8 507 478 976 77 32 0 chr15 97884680 97884903 -3495618 + (TAGA)n Simple_repeat Simple_repeat 1 230 0 2455 196 49 16 chr15 97884903 97885358 -3495163 - MLT2B2 LTR ERVL -37 478 1 5798 133 22 21 chr15 97886039 97886360 -3494161 + L1MA8 LINE L1 5167 5486 -805 2398 105 0 0 chr15 97886360 97886665 -3493856 + AluSx SINE Alu 1 305 -7 5798 133 22 21 chr15 97886665 97887464 -3493057 + L1MA8 LINE L1 5486 6288 -3 297 340 209 19 chr15 97887707 97887913 -3492608 + MIR SINE MIR 2 246 -16 938 202 6 11 chr15 97888237 97888420 -3492101 - AluJo SINE Alu -7 305 124 228 325 119 39 chr15 97889210 97889521 -3491000 + L2 LINE L2 2869 3204 -68 326 280 17 42 chr15 97889793 97889911 -3490610 + MIR SINE MIR 37 151 -57 227 289 10 10 chr15 97890152 97890249 -3490272 - L1MC/D LINE L1 -1980 5828 5732 1075 137 91 0 chr15 97890265 97890462 -3490059 - L1MD1 LINE L1 0 6242 6028 831 117 23 31 chr15 97890464 97890592 -3489929 - FLAM_C SINE Alu -2 141 15 6887 220 54 26 chr15 97890595 97893460 -3487061 - L1MD1 LINE L1 -203 6039 3085 2473 222 21 11 chr15 97893465 97894132 -3486389 - L1MD1 LINE L1 -3158 2988 2315 * 5977 176 66 33 chr15 97894128 97895469 -3485052 - L1MC3 LINE L1 -1 7784 6399 909 71 0 0 chr15 97895478 97895591 -3484930 - AluY SINE Alu 0 311 199 366 280 54 11 chr15 97896057 97896243 -3484278 - L1MB3 LINE L1 -328 5855 5662 1971 119 3 0 chr15 97896296 97896590 -3483931 + L1P4 LINE L1 5474 5768 -397 214 255 20 0 chr15 97947007 97947058 -3433463 + (TG)n Simple_repeat Simple_repeat 2 53 0 1073 218 48 4 chr15 97947099 97947328 -3433193 + MIR SINE MIR 23 261 -1 471 248 16 8 chr15 97947491 97947620 -3432901 - MLT1I LTR MaLR 0 409 280 255 203 0 0 chr15 97948475 97948534 -3431987 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 23 0 0 0 chr15 97949815 97949838 -3430683 + GC_rich Low_complexity Low_complexity 1 23 0 323 247 82 27 chr15 97950132 97950278 -3430243 + L1ME4a LINE L1 5959 6112 -9 364 228 39 31 chr15 97950455 97950582 -3429939 + MIR3 SINE MIR 14 141 -67 1436 91 30 0 chr15 97951167 97951365 -3429156 + AluSq SINE Alu 1 204 -109 468 290 28 14 chr15 97951466 97951611 -3428910 + MLT1J LTR MaLR 192 338 -173 237 205 48 36 chr15 97951656 97951739 -3428782 + MLT1J1 LTR MaLR 363 446 0 710 192 0 0 chr15 97951893 97952013 -3428508 + FLAM_A SINE Alu 10 129 -13 180 287 10 89 chr15 97952247 97952284 -3428237 + MIR SINE MIR 164 202 -60 868 253 104 19 chr15 97952284 97952659 -3427862 - MLT1I LTR MaLR -2 407 1 180 287 10 89 chr15 97952659 97952722 -3427799 + MIR SINE MIR 202 256 -6 520 300 64 32 chr15 97952753 97952917 -3427604 - L2 LINE L2 -69 3244 3087 180 111 0 0 chr15 97952917 97952944 -3427577 + (TG)n Simple_repeat Simple_repeat 1 27 0 520 300 64 32 chr15 97952944 97953228 -3427293 - L2 LINE L2 -226 3087 2778 6608 78 5 40 chr15 97953785 97954967 -3425554 - L1PA7 LINE L1 0 6154 5020 1173 38 0 0 chr15 97955130 97955262 -3425259 - AluSg1 SINE Alu -177 132 1 26 50 0 0 chr15 97955760 97955800 -3424721 + GC_rich Low_complexity Low_complexity 1 40 0 2080 124 7 7 chr15 97961954 97962252 -3418269 - AluSx SINE Alu -11 301 4 1922 140 30 3 chr15 97962904 97963204 -3417317 + AluSx SINE Alu 1 308 -4 361 236 188 0 chr15 97963325 97963469 -3417052 - MIR SINE MIR -22 240 70 1945 125 2 174 chr15 97963790 97964198 -3416323 - LTR14B LTR ERVK 0 608 7 229 290 79 118 chr15 97964727 97964783 -3415738 - L2 LINE L2 -87 3185 3128 1825 160 0 14 chr15 97964783 97965077 -3415444 + AluJb SINE Alu 1 290 -22 229 290 79 118 chr15 97965077 97965299 -3415222 - L2 LINE L2 -144 3128 2918 549 239 37 12 chr15 97965663 97965826 -3414695 - MER74A LTR ERVL -80 478 312 * 679 165 12 104 chr15 97965822 97965986 -3414535 - MER74B LTR ERVL -472 150 2 2136 229 142 91 chr15 97966015 97966315 -3414206 - L1MEc LINE L1 -4841 1400 1117 1773 159 14 0 chr15 97966315 97966592 -3413929 - AluSx SINE Alu -31 281 1 2136 229 142 91 chr15 97966592 97967616 -3412905 - L1MEc LINE L1 -5124 1117 39 522 302 24 14 chr15 97967942 97968154 -3412367 + L2 LINE L2 427 640 -2674 836 294 113 13 chr15 97968331 97968790 -3411731 - L2 LINE L2 -1607 1707 1203 281 278 87 90 chr15 97968806 97968877 -3411644 + L1MC4a LINE L1 4879 4949 -1197 837 147 8 0 chr15 97968877 97969006 -3411515 - FLAM_C SINE Alu -3 130 1 281 278 87 90 chr15 97969006 97969222 -3411299 + L1MC4a LINE L1 4949 5165 -981 5377 219 216 25 chr15 97969276 97970403 -3410118 + L1MC4a LINE L1 5256 6166 -1642 180 0 0 0 chr15 97970403 97970423 -3410098 + (TG)n Simple_repeat Simple_repeat 1 20 0 5377 219 216 25 chr15 97970423 97971437 -3409084 + L1MC4a LINE L1 6166 7806 -2 192 135 0 0 chr15 97976423 97976460 -3404061 + (CA)n Simple_repeat Simple_repeat 2 38 0 192 200 0 0 chr15 97976455 97976505 -3404016 + (TA)n Simple_repeat Simple_repeat 2 51 0 252 0 0 0 chr15 97976823 97976851 -3403670 + (CTG)n Simple_repeat Simple_repeat 1 28 0 223 191 79 16 chr15 97977370 97977433 -3403088 - MIR SINE MIR -78 184 118 2103 110 20 13 chr15 97978813 97979113 -3401408 + AluSx SINE Alu 1 302 -10 636 290 148 33 chr15 97979903 97980547 -3399974 + L2 LINE L2 2246 2963 -351 372 240 0 0 chr15 97980664 97980739 -3399782 + L2 LINE L2 3236 3310 -3 280 292 83 71 chr15 97983802 97983970 -3396551 + MIR SINE MIR 43 212 -50 1801 106 20 4 chr15 97986676 97986930 -3393591 + AluSg SINE Alu 44 301 -9 4148 239 94 90 chr15 97987643 97988828 -3391693 - L1MC3 LINE L1 -10 8570 7392 1846 149 10 0 chr15 97988828 97989116 -3391405 - AluJo SINE Alu -16 296 6 4148 239 94 90 chr15 97989116 97989137 -3391384 - L1MC3 LINE L1 -1188 7392 7373 351 0 0 0 chr15 97989137 97989176 -3391345 + (TG)n Simple_repeat Simple_repeat 2 40 0 4148 239 94 90 chr15 97989176 97989292 -3391229 - L1MC3 LINE L1 -1207 7373 7259 922 112 22 0 chr15 97989292 97989426 -3391095 + AluSg SINE Alu 1 137 -173 4148 239 94 90 chr15 97989426 97989459 -3391062 - L1MC3 LINE L1 -1321 7259 7228 297 0 0 0 chr15 97989459 97989492 -3391029 + (CA)n Simple_repeat Simple_repeat 2 34 0 4148 239 94 90 chr15 97989492 97990376 -3390145 - L1MC3 LINE L1 -1352 7228 6349 895 112 8 15 chr15 97990376 97990510 -3390011 - FLAM_C SINE Alu 0 133 1 4148 239 94 90 chr15 97990510 97990635 -3389886 - L1MC3 LINE L1 -2231 6349 6226 2443 84 3 0 chr15 97990635 97990934 -3389587 - AluSp SINE Alu -13 300 1 4148 239 94 90 chr15 97990934 97992706 -3387815 - L1MC3 LINE L1 -2354 6226 4364 3216 233 106 14 chr15 97992703 97993564 -3386957 - L1MC3 LINE L1 -3011 3930 3149 * 2364 92 3 0 chr15 97993564 97993856 -3386665 - AluSp SINE Alu -12 301 9 3216 233 106 14 chr15 97993856 97993871 -3386650 - L1MC3 LINE L1 -3792 3149 3137 477 0 0 0 chr15 97993871 97993924 -3386597 + (CA)n Simple_repeat Simple_repeat 2 54 0 3216 233 106 14 chr15 97993924 97994317 -3386204 - L1MC3 LINE L1 -3804 3137 2562 1845 144 67 37 chr15 97994324 97994700 -3385821 + L1MC3 LINE L1 6711 7097 -688 282 197 14 56 chr15 97994700 97994771 -3385750 + MLT1F1 LTR MaLR 35 102 -465 436 185 59 50 chr15 97994777 97994896 -3385625 + L1MC3 LINE L1 7171 7290 -495 1282 196 9 0 chr15 97994896 97995121 -3385400 + MER46A DNA MER2_type 1 227 -9 2655 164 27 4 chr15 97995128 97995605 -3384916 + L1MC3 LINE L1 7289 7776 -9 822 256 111 35 chr15 97995612 97996280 -3384241 - L1MC3 LINE L1 -4484 2521 1846 565 281 132 25 chr15 97996281 97996523 -3383998 - L1MC3 LINE L1 -5182 1241 974 348 285 138 50 chr15 97996722 97997110 -3383411 - L1MC3 LINE L1 -5629 793 62 2512 80 0 0 chr15 97997746 97998048 -3382473 - AluSx SINE Alu -10 302 1 494 183 43 9 chr15 97998231 97998346 -3382175 + LTR9B LTR ERV1 445 563 -81 180 0 0 0 chr15 97998346 97998366 -3382155 + (A)n Simple_repeat Simple_repeat 1 20 0 2445 142 21 19 chr15 97998383 97998813 -3381708 - L1MA4A LINE L1 -29 6274 5844 963 119 233 10 chr15 97999342 97999535 -3380986 - MER46A DNA MER2_type 0 236 1 2106 136 0 0 chr15 97999686 97999988 -3380533 + AluSx SINE Alu 1 302 -10 207 0 0 0 chr15 98000685 98000708 -3379813 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2172 82 0 0 chr15 98000711 98000991 -3379530 - AluY SINE Alu -31 280 1 307 287 36 35 chr15 98001085 98001220 -3379301 + MLT1K LTR MaLR 454 615 0 1261 170 56 72 chr15 98002241 98002547 -3377974 + AluJb SINE Alu 1 301 -1 4008 131 48 5 chr15 98002556 98003382 -3377139 + L1PB1 LINE L1 2093 3013 -3849 * 5657 163 34 11 chr15 98003373 98005736 -3374785 + L1PB1 LINE L1 4085 6862 -5 180 0 0 0 chr15 98005736 98005756 -3374765 + (T)n Simple_repeat Simple_repeat 1 20 0 1713 151 24 14 chr15 98005766 98006058 -3374463 + AluSx SINE Alu 3 297 -15 24 53 0 0 chr15 98006418 98006456 -3374065 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr15 98006506 98006527 -3373994 + AT_rich Low_complexity Low_complexity 1 21 0 513 79 236 0 chr15 98007590 98007679 -3372842 + HY1 scRNA scRNA 1 110 -2 21 0 0 0 chr15 98007679 98007700 -3372821 + AT_rich Low_complexity Low_complexity 1 21 0 552 309 61 31 chr15 98008801 98009215 -3371306 - L1MC/D LINE L1 -391 5730 5337 525 314 101 5 chr15 98009292 98009499 -3371022 - MLT1L LTR MaLR -62 553 327 1566 236 91 91 chr15 98009687 98010580 -3369941 - L1ME3A LINE L1 -5 6165 5273 814 248 25 22 chr15 98011087 98011365 -3369156 + L1M4 LINE L1 2675 2953 -3193 279 250 20 30 chr15 98011446 98011546 -3368975 - L1ME LINE L1 -515 5606 5508 543 282 79 65 chr15 98011727 98012231 -3368290 - L1MEd LINE L1 -4862 1257 747 237 25 0 25 chr15 98012332 98012372 -3368149 + Alu SINE Alu 260 298 -3 1989 125 3 10 chr15 98012891 98013188 -3367333 - AluSx SINE Alu -17 295 1 1735 156 123 3 chr15 98015733 98016035 -3364486 + Tigger4(Zombi) DNA MER2_type 1 338 -2393 1678 120 18 15 chr15 98016035 98016309 -3364212 + Tigger4(Zombi) DNA MER2_type 2457 2731 0 311 331 69 8 chr15 98016940 98017070 -3363451 - MIR3 SINE MIR -9 199 62 2465 65 0 7 chr15 98018310 98018616 -3361905 - AluY SINE Alu -7 304 1 1089 201 54 59 chr15 98021039 98021393 -3359128 + LTR37A LTR ERV1 27 378 -48 2340 49 7 13 chr15 98021420 98021748 -3358773 + AluY SINE Alu 1 311 0 360 0 0 0 chr15 98022330 98022370 -3358151 + (TTA)n Simple_repeat Simple_repeat 3 42 0 6501 72 17 15 chr15 98022370 98023632 -3356889 - L1PA7 LINE L1 -18 6136 4871 738 207 103 67 chr15 98023736 98024094 -3356427 + LTR37A LTR ERV1 34 404 -22 220 315 54 39 chr15 98024120 98024250 -3356271 + L2 LINE L2 2275 2406 -908 225 250 15 125 chr15 98024585 98024721 -3355800 + MLT1K LTR MaLR 454 574 -14 33 73 0 0 chr15 98025362 98025430 -3355091 + AT_rich Low_complexity Low_complexity 1 68 0 21 0 0 0 chr15 98025453 98025474 -3355047 + AT_rich Low_complexity Low_complexity 1 21 0 2147 121 0 10 chr15 98026171 98026484 -3354037 + AluSx SINE Alu 1 310 -2 906 293 88 25 chr15 98026870 98027270 -3353251 - L1ME3A LINE L1 -206 5947 5523 319 270 101 7 chr15 98027274 98027422 -3353099 - L1ME3A LINE L1 -731 5416 5255 26 30 0 0 chr15 98027422 98027455 -3353066 + AT_rich Low_complexity Low_complexity 1 33 0 1069 262 108 42 chr15 98027550 98028172 -3352349 - L1ME3A LINE L1 -977 5152 4490 1103 273 83 25 chr15 98028236 98028632 -3351889 - MLT1J2 LTR MaLR 0 450 32 623 86 0 0 chr15 98028657 98028750 -3351771 + AluSp/q SINE Alu 211 303 -10 506 337 37 8 chr15 98028784 98029030 -3351491 - L1ME3A LINE L1 -2395 3734 3482 302 289 11 132 chr15 98029180 98029370 -3351151 - MIR3 SINE MIR -23 185 19 615 296 76 43 chr15 98030263 98031015 -3349506 - L1MEd LINE L1 -4862 1257 580 1942 166 26 7 chr15 98031643 98032148 -3348373 + L1MB7 LINE L1 5568 6163 -21 1330 185 16 4 chr15 98033587 98033830 -3346691 - L1M4 LINE L1 -1163 4983 4738 580 188 181 7 chr15 98034023 98034161 -3346360 - MER3 DNA MER1_type -10 199 38 215 0 67 0 chr15 98034377 98034407 -3346114 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 30 0 0 0 chr15 98034871 98034901 -3345620 + AT_rich Low_complexity Low_complexity 1 30 0 290 217 0 0 chr15 98036037 98036083 -3344438 + L2 LINE L2 3194 3239 -33 1611 157 93 16 chr15 98036480 98036793 -3343728 + MER1B DNA MER1_type 1 337 0 455 250 15 23 chr15 98038048 98038180 -3342341 - MER5A DNA MER1_type -58 131 1 183 283 310 18 chr15 98038386 98038499 -3342022 + MIR SINE MIR 102 247 -15 381 323 39 8 chr15 98038649 98038779 -3341742 + MIR3 SINE MIR 8 141 -67 28 79 0 0 chr15 98039847 98039910 -3340611 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr15 98041834 98041855 -3338666 + AT_rich Low_complexity Low_complexity 1 21 0 630 327 96 43 chr15 98043702 98044121 -3336400 + L2 LINE L2 136 576 -2738 501 178 0 0 chr15 98044167 98044257 -3336264 + L1MC1 LINE L1 6244 6333 0 2335 74 0 0 chr15 98045058 98045356 -3335165 + AluY SINE Alu 1 298 -13 26 0 0 0 chr15 98046555 98046581 -3333940 + AT_rich Low_complexity Low_complexity 1 26 0 964 258 57 27 chr15 98046583 98046917 -3333604 + HAL1b LINE L1 259 602 -746 221 259 25 74 chr15 98047012 98047093 -3333428 + L2 LINE L2 3233 3309 -4 2330 49 3 7 chr15 98047219 98047507 -3333014 - AluY SINE Alu -24 287 1 327 198 0 31 chr15 98047971 98048067 -3332454 + L1ME LINE L1 2183 2275 -3871 1960 136 30 0 chr15 98048101 98048403 -3332118 + AluJb SINE Alu 1 311 -1 219 167 0 0 chr15 98048411 98048453 -3332068 + GA-rich Low_complexity Low_complexity 1 42 0 278 323 78 38 chr15 98048486 98048910 -3331611 + L1ME LINE L1 2329 2769 -3377 389 308 76 22 chr15 98049196 98049489 -3331032 + L1ME LINE L1 5476 5774 -347 243 214 56 22 chr15 98049968 98050057 -3330464 + L1M4 LINE L1 512 603 -5927 601 305 103 51 chr15 98050086 98050576 -3329945 + L1M4 LINE L1 929 1423 -5117 1795 195 51 29 chr15 98050597 98051006 -3329515 + L1M4 LINE L1 1715 2114 -4464 2302 76 0 3 chr15 98051006 98051307 -3329214 + AluY SINE Alu 1 300 -11 1795 195 51 29 chr15 98051307 98051463 -3329058 + L1M4 LINE L1 2114 6040 -538 * 1934 256 100 39 chr15 98051454 98052310 -3328211 + L1ME3A LINE L1 4321 5124 -1046 1461 194 30 20 chr15 98052310 98052609 -3327912 + AluJo SINE Alu 1 302 -10 1934 256 100 39 chr15 98052609 98053486 -3327035 + L1ME3A LINE L1 5124 6158 -12 1063 211 58 0 chr15 98054946 98055154 -3325367 - MER58A DNA MER1_type -1 223 4 22 0 0 0 chr15 98055287 98055309 -3325212 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr15 98055723 98055768 -3324753 + AT_rich Low_complexity Low_complexity 1 45 0 847 269 73 8 chr15 98056229 98056463 -3324058 - MIR SINE MIR 0 262 14 306 357 138 41 chr15 98057250 98057569 -3322952 - L2 LINE L2 -42 3230 2881 289 290 103 7 chr15 98057808 98057953 -3322568 + L1ME LINE L1 141 299 -5906 427 265 96 48 chr15 98058404 98058898 -3321623 + L1ME LINE L1 872 1343 -4862 213 197 40 0 chr15 98058900 98058976 -3321545 + GA-rich Low_complexity Low_complexity 5 83 0 1625 90 0 0 chr15 98058998 98059209 -3321312 - AluY SINE Alu -18 293 83 3891 48 24 2 chr15 98059209 98059706 -3320815 + LTR10D LTR ERV1 6 513 0 689 66 0 0 chr15 98059706 98059797 -3320724 - AluY SINE Alu -227 91 1 524 262 102 55 chr15 98059797 98060141 -3320380 + L1ME LINE L1 1437 1796 -4600 320 329 86 21 chr15 98060189 98060432 -3320089 + L1ME LINE L1 1880 2138 -4258 629 239 58 62 chr15 98060435 98060840 -3319681 + L1ME LINE L1 2169 2536 -3679 1767 105 4 0 chr15 98061498 98061736 -3318785 - AluSg/x SINE Alu 0 312 74 558 263 181 58 chr15 98061736 98062117 -3318404 + L2 LINE L2 965 1392 -1922 615 247 52 60 chr15 98062127 98062378 -3318143 + L1M4 LINE L1 4475 4723 -1423 4931 187 37 48 chr15 98062426 98063750 -3316771 + L1ME LINE L1 3168 4476 -1739 1490 109 12 31 chr15 98063750 98064007 -3316514 - Tigger5 DNA MER2_type 0 2323 2072 428 169 0 0 chr15 98063978 98064043 -3316478 - Tigger5 DNA MER2_type -2258 65 1 * 4598 179 43 21 chr15 98064076 98064843 -3315678 + L1MB3 LINE L1 4511 5259 -993 2013 114 13 10 chr15 98064843 98065142 -3315379 + AluSq SINE Alu 1 300 -13 4598 179 43 21 chr15 98065142 98065948 -3314573 + L1MB3 LINE L1 5259 6117 -135 2491 42 16 10 chr15 98065948 98066257 -3314264 + AluY SINE Alu 1 311 0 4598 179 43 21 chr15 98066257 98066382 -3314139 + L1MB3 LINE L1 6117 6238 -14 329 288 144 0 chr15 98067221 98067367 -3313154 - L2 LINE L2 -944 2370 2204 2161 106 3 7 chr15 98067811 98068112 -3312409 + AluSx SINE Alu 1 300 -12 3676 166 20 1 chr15 98068112 98068769 -3311752 + L1PA15 LINE L1 5495 6163 -2 247 274 0 16 chr15 98069073 98069135 -3311386 + MIR SINE MIR 38 98 -110 414 294 80 45 chr15 98069429 98069630 -3310891 - MIR SINE MIR -53 209 2 1291 198 47 123 chr15 98070122 98070699 -3309822 - L1MC4 LINE L1 0 8042 7510 412 215 166 37 chr15 98071228 98071391 -3309130 + MLT1L LTR MaLR 424 607 -8 23 0 0 0 chr15 98072263 98072286 -3308235 + AT_rich Low_complexity Low_complexity 1 23 0 368 275 60 33 chr15 98072976 98073184 -3307337 + MIR SINE MIR 41 252 -10 692 283 87 9 chr15 98073272 98073502 -3307019 + MIR SINE MIR 15 262 0 350 341 95 49 chr15 98073773 98074478 -3306043 + L2 LINE L2 2536 3276 -37 821 148 8 0 chr15 98074568 98074696 -3305825 + FLAM_C SINE Alu 1 129 -4 470 322 65 20 chr15 98074727 98074926 -3305595 - MIR SINE MIR -5 257 50 283 303 27 80 chr15 98075634 98075822 -3304699 + MER5B DNA MER1_type 1 178 0 302 211 39 78 chr15 98075962 98076090 -3304431 - Charlie8 DNA MER1_type -1955 462 340 241 191 103 15 chr15 98076134 98076202 -3304319 - MER94 DNA DNA -35 99 26 516 237 167 40 chr15 98076230 98076428 -3304093 - AluJo SINE Alu -9 303 81 4506 180 91 22 chr15 98076479 98076525 -3303996 - L1MB7 LINE L1 -30 6154 6113 2161 101 3 7 chr15 98076525 98076823 -3303698 - AluY SINE Alu -14 297 1 4506 180 91 22 chr15 98076823 98077694 -3302827 - L1MB7 LINE L1 -71 6113 5303 2056 124 0 0 chr15 98077694 98077997 -3302524 - AluSx SINE Alu 0 303 1 4506 180 91 22 chr15 98077997 98078519 -3302002 - L1MB7 LINE L1 -881 5303 4611 188 35 35 0 chr15 98078519 98078548 -3301973 + (CGGGGG)n Simple_repeat Simple_repeat 1 30 0 4506 180 91 22 chr15 98078548 98078602 -3301919 - L1MB7 LINE L1 -1573 4611 4562 2073 213 43 38 chr15 98078733 98079042 -3301479 - L1M4 LINE L1 -1223 4923 4608 188 35 35 0 chr15 98079042 98079071 -3301450 + (CGGGGG)n Simple_repeat Simple_repeat 1 30 0 2073 213 43 38 chr15 98079071 98079343 -3301178 - L1M4 LINE L1 -1538 4608 4339 25 31 0 0 chr15 98079608 98079640 -3300881 + AT_rich Low_complexity Low_complexity 1 32 0 300 350 71 33 chr15 98080281 98080464 -3300057 + MER91A DNA MER1_type 1 190 -6 2213 101 0 7 chr15 98080559 98080856 -3299665 - AluSq SINE Alu -15 298 4 1200 291 129 12 chr15 98082370 98083512 -3297009 - L1ME3A LINE L1 -219 5951 4672 1481 157 4 4 chr15 98083546 98083788 -3296733 - AluJb SINE Alu -70 242 1 609 213 20 86 chr15 98084026 98084223 -3296298 + MLT1E2 LTR MaLR 1 184 -442 1761 164 0 7 chr15 98084228 98084520 -3296001 + AluSx SINE Alu 1 290 -22 941 281 139 32 chr15 98084588 98085452 -3295069 + L1MEc LINE L1 577 1532 -4864 1194 255 105 36 chr15 98085484 98085775 -3294746 + L1MEc LINE L1 2465 2735 -3480 1733 157 34 7 chr15 98085775 98085897 -3294624 + AluSx SINE Alu 1 118 -194 423 0 0 0 chr15 98085897 98085944 -3294577 + (CA)n Simple_repeat Simple_repeat 2 48 0 1733 157 34 7 chr15 98085944 98086114 -3294407 + AluSx SINE Alu 118 301 -11 1194 255 105 36 chr15 98086114 98086375 -3294146 + L1MEc LINE L1 2735 3055 -3160 535 276 42 14 chr15 98086405 98086630 -3293891 + L1MEc LINE L1 3328 3563 -2652 362 125 0 47 chr15 98086632 98086696 -3293825 + MER50 LTR ERV1 1 61 -673 375 188 0 0 chr15 98086696 98086813 -3293708 + (CA)n Simple_repeat Simple_repeat 2 118 0 4082 141 14 8 chr15 98086813 98087481 -3293040 + MER50 LTR ERV1 53 724 -10 4643 226 97 14 chr15 98087481 98087615 -3292906 + L1MEc LINE L1 3576 3697 -2518 297 0 0 0 chr15 98087615 98087648 -3292873 + (CA)n Simple_repeat Simple_repeat 2 34 0 4643 226 97 14 chr15 98087648 98088907 -3291614 + L1MEc LINE L1 3697 5085 -1130 979 161 11 33 chr15 98089381 98089561 -3290960 + MER2 DNA MER2_type 2 177 -168 353 197 16 0 chr15 98089608 98089669 -3290852 + MER2 DNA MER2_type 284 345 0 7262 55 4 11 chr15 98091621 98092609 -3287912 - MER11C LTR ERVK 0 1071 1 224 337 43 11 chr15 98093772 98093864 -3286657 + L2 LINE L2 3181 3275 -38 534 276 68 53 chr15 98093876 98094140 -3286381 - L2 LINE L2 -4 3309 3042 514 258 104 16 chr15 98094177 98094359 -3286162 - MIR SINE MIR -18 244 47 3900 193 34 36 chr15 98094721 98095520 -3285001 + MER21B LTR ERV1 66 862 -1 512 301 99 23 chr15 98095964 98096309 -3284212 + L1ME2 LINE L1 34 404 -5992 1055 241 38 25 chr15 98096318 98096538 -3283983 - MER33 DNA MER1_type -2261 324 97 2169 175 36 17 chr15 98096538 98096956 -3283565 + MSTB LTR MaLR 1 426 0 1055 241 38 25 chr15 98096956 98097055 -3283466 - MER33 DNA MER1_type -2488 97 1 732 291 95 30 chr15 98097078 98098277 -3282244 + L1ME2 LINE L1 437 1742 -4648 1011 130 125 14 chr15 98098278 98098494 -3282027 + L1MC2 LINE L1 6104 6343 -1 6416 226 99 43 chr15 98098497 98100691 -3279830 + L1ME2 LINE L1 1747 3817 -2416 1565 151 7 64 chr15 98100691 98100828 -3279693 + AluJo SINE Alu 1 144 -159 2051 129 7 13 chr15 98100828 98101137 -3279384 + AluSx SINE Alu 1 307 -5 1565 151 7 64 chr15 98101137 98101319 -3279202 + AluJo SINE Alu 144 303 0 6416 226 99 43 chr15 98101319 98102029 -3278492 + L1ME2 LINE L1 3817 4486 -1747 2919 54 3 3 chr15 98102029 98102378 -3278143 + L1PA7 LINE L1 5806 6154 0 6416 226 99 43 chr15 98102378 98103507 -3277014 + L1ME2 LINE L1 4486 5992 -241 417 223 116 8 chr15 98103660 98103781 -3276740 + MIR SINE MIR 109 242 -20 2654 145 32 48 chr15 98104571 98105095 -3275426 - L1MB8 LINE L1 -8 6170 5655 2033 130 2 44 chr15 98105207 98105599 -3274922 + Tigger3(Golem) DNA MER2_type 1 3028 -1 2214 126 0 3 chr15 98109740 98110049 -3270472 + AluSx SINE Alu 1 308 -4 3700 232 54 34 chr15 98110788 98111891 -3268630 + L1MC4a LINE L1 6606 7731 -77 2448 68 0 23 chr15 98112504 98112813 -3267708 + AluY SINE Alu 1 302 -9 869 244 74 27 chr15 98113273 98114378 -3266143 + L1MC3 LINE L1 6661 7982 -13 3636 133 2 11 chr15 98114637 98115171 -3265350 + MER1A DNA MER1_type 1 529 0 506 235 11 9 chr15 98115272 98115408 -3265113 + L1MC4 LINE L1 7809 8040 -2 2546 40 7 3 chr15 98116140 98116443 -3264078 - AluY SINE Alu -7 304 1 217 194 0 0 chr15 98116728 98116764 -3263757 - L2 LINE L2 -240 3032 2997 1185 299 106 44 chr15 98116837 98117853 -3262668 - L2 LINE L2 -11 3302 2221 280 275 162 7 chr15 98118039 98118181 -3262340 - MIR SINE MIR -30 232 69 2208 108 3 0 chr15 98118250 98118545 -3261976 - AluSx SINE Alu -16 296 1 260 181 12 48 chr15 98119022 98119105 -3261416 + T-rich Low_complexity Low_complexity 6 85 0 34 72 0 0 chr15 98119358 98119427 -3261094 + AT_rich Low_complexity Low_complexity 1 69 0 22 70 0 0 chr15 98119655 98119698 -3260823 + AT_rich Low_complexity Low_complexity 1 43 0 187 294 106 12 chr15 98120184 98120269 -3260252 - MIR SINE MIR -37 225 133 23 0 0 0 chr15 98120975 98120998 -3259523 + AT_rich Low_complexity Low_complexity 1 23 0 441 0 0 0 chr15 98121783 98121832 -3258689 + (CA)n Simple_repeat Simple_repeat 2 50 0 360 284 174 66 chr15 98122901 98123509 -3257012 + L1M2 LINE L1 586 1259 -5590 32 75 0 0 chr15 98123898 98123965 -3256556 + GC_rich Low_complexity Low_complexity 1 67 0 215 141 30 101 chr15 98124073 98124172 -3256349 + (CGGGG)n Simple_repeat Simple_repeat 2 93 0 435 219 119 51 chr15 98124494 98124676 -3255845 - MIR SINE MIR -53 209 18 212 119 0 24 chr15 98125668 98125710 -3254811 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 268 296 117 52 chr15 98125973 98126186 -3254335 - L2 LINE L2 -14 3258 3032 409 326 29 14 chr15 98126498 98126636 -3253885 + L2 LINE L2 3125 3264 -8 269 334 177 27 chr15 98126653 98126952 -3253569 - L2 LINE L2 -353 2961 2618 412 278 118 37 chr15 98127069 98127314 -3253207 + LTR16C LTR ERVL 217 481 -10 187 280 0 75 chr15 98127547 98127640 -3252881 - L2 LINE L2 -912 2402 2317 2240 86 7 0 chr15 98127731 98128022 -3252499 - AluSx SINE Alu -19 293 1 3680 199 95 29 chr15 98128704 98129683 -3250838 + L1MC4a LINE L1 6711 7808 0 378 302 7 22 chr15 98130843 98130982 -3249539 + MIR SINE MIR 13 149 -113 722 264 154 45 chr15 98131094 98131515 -3249006 - L2 LINE L2 0 3313 2847 207 0 0 0 chr15 98131675 98131698 -3248823 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1580 108 24 0 chr15 98131714 98131927 -3248594 - AluSx SINE Alu -94 218 1 275 196 0 0 chr15 98131944 98131995 -3248526 - MLT1K LTR MaLR -17 571 521 2229 101 7 3 chr15 98132117 98132425 -3248096 - AluSc SINE Alu 0 309 1 1010 249 66 38 chr15 98132426 98132743 -3247778 - MLT1K LTR MaLR -250 338 13 1578 228 29 60 chr15 98132909 98133423 -3247098 + LTR53 LTR ERVL 21 518 -1 294 274 62 26 chr15 98133605 98133718 -3246803 + L2 LINE L2 3156 3272 0 808 299 47 14 chr15 98134538 98134869 -3245652 + L1MC/D LINE L1 5442 5808 -1977 836 180 33 38 chr15 98134944 98135127 -3245394 + MER20 DNA MER1_type 37 218 -1 645 304 88 42 chr15 98135726 98135986 -3244535 + L1MC4a LINE L1 5688 5959 -162 2354 102 0 3 chr15 98136483 98136787 -3243734 + AluSg SINE Alu 1 303 -7 270 116 0 0 chr15 98136805 98136848 -3243673 + (TTA)n Simple_repeat Simple_repeat 3 45 0 2049 124 0 3 chr15 98138199 98138482 -3242039 + AluSx SINE Alu 1 282 -30 183 42 0 0 chr15 98138487 98138511 -3242010 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 766 176 65 29 chr15 98138798 98138968 -3241553 - MER5B DNA MER1_type -2 176 1 446 293 94 71 chr15 98139033 98139090 -3241431 + L2 LINE L2 976 1030 -2284 896 264 76 53 chr15 98139090 98139526 -3240995 - MLT1J1 LTR MaLR 0 446 1 446 293 94 71 chr15 98139526 98139715 -3240806 + L2 LINE L2 1030 1235 -2079 2135 132 3 22 chr15 98139715 98140033 -3240488 + AluSx SINE Alu 1 312 0 446 293 94 71 chr15 98140033 98140136 -3240385 + L2 LINE L2 1235 1334 -1980 964 302 112 17 chr15 98140136 98140980 -3239541 + L2 LINE L2 2330 3257 -56 212 86 29 0 chr15 98141054 98141089 -3239432 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 2113 147 0 0 chr15 98141253 98141559 -3238962 - AluSx SINE Alu -6 306 1 22 35 0 0 chr15 98142929 98142958 -3237563 + AT_rich Low_complexity Low_complexity 1 29 0 245 197 70 0 chr15 98143376 98143447 -3237074 - MIR SINE MIR 0 262 187 1422 271 66 41 chr15 98143738 98144085 -3236436 - L1ME3A LINE L1 -138 6032 5671 1894 123 17 33 chr15 98144085 98144386 -3236135 - AluJb SINE Alu -16 296 1 1422 271 66 41 chr15 98144386 98144586 -3235935 - L1ME3A LINE L1 -499 5671 5477 582 305 70 54 chr15 98144756 98144929 -3235592 - L1MC/D LINE L1 -2164 5713 5544 1905 144 0 7 chr15 98144929 98145220 -3235301 - AluJo SINE Alu -23 289 1 582 305 70 54 chr15 98145220 98145416 -3235105 - L1MC/D LINE L1 -2333 5544 5338 1937 151 10 0 chr15 98145482 98145781 -3234740 - AluSx SINE Alu -10 302 1 790 207 61 0 chr15 98145781 98145945 -3234576 - MER3 DNA MER1_type -82 127 1 1628 163 63 6 chr15 98146113 98146432 -3234089 - L1MA7 LINE L1 -2 6289 5953 225 277 11 32 chr15 98146931 98147025 -3233496 - L1MC/D LINE L1 -2334 3881 3790 625 244 100 6 chr15 98147151 98147311 -3233210 - L1MC/D LINE L1 -2126 5682 5508 854 253 36 16 chr15 98147340 98147589 -3232932 - L1MC/D LINE L1 -6088 308 55 2279 103 0 3 chr15 98147658 98147958 -3232563 + AluSx SINE Alu 1 299 -13 321 308 8 46 chr15 98148223 98148353 -3232168 - HAL1b LINE L1 -435 913 789 243 300 45 54 chr15 98148397 98148620 -3231901 - HAL1b LINE L1 -436 912 692 1098 13 56 3 chr15 98148911 98149215 -3231306 + (TAGA)n Simple_repeat Simple_repeat 1 320 0 2071 89 34 27 chr15 98149215 98149508 -3231013 - AluSq SINE Alu -18 295 1 32 81 0 0 chr15 98150442 98150516 -3230005 + AT_rich Low_complexity Low_complexity 1 74 0 410 264 61 9 chr15 98150804 98150930 -3229591 - MIR SINE MIR -64 144 37 192 77 0 0 chr15 98150946 98150972 -3229549 + (CTATA)n Simple_repeat Simple_repeat 4 29 0 602 136 20 20 chr15 98150996 98151143 -3229378 + (CATAC)n Simple_repeat Simple_repeat 4 150 0 921 93 0 17 chr15 98151153 98151325 -3229196 + (CATCC)n Simple_repeat Simple_repeat 5 173 0 426 305 0 23 chr15 98151800 98151931 -3228590 + MIR3 SINE MIR 54 181 -27 361 213 195 6 chr15 98152011 98152175 -3228346 + L1ME4a LINE L1 5926 6120 -1 1975 208 31 49 chr15 98153023 98153533 -3226988 + Charlie4a DNA MER1_type 2 502 -6 1479 284 22 10 chr15 98153618 98154115 -3226406 + L1MEc LINE L1 34 536 -5860 2413 246 61 40 chr15 98154132 98154538 -3225983 + L1MEc LINE L1 602 998 -5217 207 0 0 0 chr15 98154538 98154561 -3225960 + (CA)n Simple_repeat Simple_repeat 2 24 0 2413 246 61 40 chr15 98154561 98154910 -3225611 + L1MEc LINE L1 998 1338 -4877 1725 149 48 17 chr15 98154910 98155205 -3225316 + AluJo SINE Alu 1 304 -8 2413 246 61 40 chr15 98155205 98155272 -3225249 + L1MEc LINE L1 1338 1402 -4813 1923 125 4 0 chr15 98155272 98155544 -3224977 + AluSx SINE Alu 1 273 -39 2413 246 61 40 chr15 98155544 98155562 -3224959 + L1MEc LINE L1 1402 1418 -4797 194 0 39 0 chr15 98155562 98155588 -3224933 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2413 246 61 40 chr15 98155588 98155796 -3224725 + L1MEc LINE L1 1418 1545 -4670 28 48 0 0 chr15 98155796 98155838 -3224683 + AT_rich Low_complexity Low_complexity 1 42 0 811 134 43 70 chr15 98155851 98155925 -3224596 - L1 LINE L1 -1693 4453 4379 1695 102 5 0 chr15 98155925 98156141 -3224380 - AluSx SINE Alu -84 228 12 811 134 43 70 chr15 98156141 98156252 -3224269 - L1 LINE L1 -1767 4379 4273 3846 164 39 1 chr15 98156352 98156863 -3223658 - L1MA9 LINE L1 0 6312 5768 192 40 0 0 chr15 98156863 98156888 -3223633 + (TG)n Simple_repeat Simple_repeat 2 26 0 3846 164 39 1 chr15 98156888 98157052 -3223469 - L1MA9 LINE L1 -544 5768 5612 1486 126 20 8 chr15 98157056 98157242 -3223279 - L1MA9 LINE L1 -754 5537 5346 7847 39 0 12 chr15 98157242 98158251 -3222270 + L1PA4 LINE L1 5158 6155 0 1486 126 20 8 chr15 98158251 98158311 -3222210 - L1MA9 LINE L1 -945 5346 5288 8585 164 43 30 chr15 98158313 98158406 -3222115 - L1MA9 LINE L1 -1115 5031 4941 1507 174 44 67 chr15 98158406 98158722 -3221799 + AluJo SINE Alu 2 310 -2 8585 164 43 30 chr15 98158722 98159456 -3221065 - L1MA9 LINE L1 -1205 4941 4218 2032 171 19 16 chr15 98159456 98159830 -3220691 - THE1C LTR MaLR 0 375 1 8585 164 43 30 chr15 98159830 98160716 -3219805 - L1MA9 LINE L1 -1928 4218 3295 4000 207 36 7 chr15 98160715 98161657 -3218864 + L1MA9 LINE L1 2382 3350 -2865 * 3056 253 37 12 chr15 98161647 98162724 -3217797 + L1MEc LINE L1 1573 2640 -3575 * 1215 284 82 29 chr15 98162746 98163335 -3217186 + L1MEc LINE L1 1204 1823 -4573 547 197 77 87 chr15 98163805 98163988 -3216533 + L1MC4a LINE L1 5875 6055 -1753 237 234 0 0 chr15 98164058 98164122 -3216399 + A-rich Low_complexity Low_complexity 1 64 0 1005 445 78 0 chr15 98164125 98164406 -3216115 + AluSq SINE Alu 1 303 0 2322 131 48 14 chr15 98164718 98165070 -3215451 + THE1B LTR MaLR 1 364 0 934 245 34 13 chr15 98165124 98165361 -3215160 + MLT2B3 LTR ERVL 293 534 -20 592 73 0 55 chr15 98165375 98165485 -3215036 + (TAGA)n Simple_repeat Simple_repeat 4 107 0 256 160 20 0 chr15 98165529 98165579 -3214942 + MLT2B1 LTR ERVL 464 514 -6 * 282 129 81 32 chr15 98165578 98165640 -3214881 + MLT2B1 LTR ERVL 456 520 0 2953 183 72 13 chr15 98166250 98166851 -3213670 - MER92B LTR ERV1 0 636 1 239 193 88 0 chr15 98167057 98167114 -3213407 + LTR37B LTR ERV1 9 70 -398 384 219 246 0 chr15 98167162 98167276 -3213245 + Charlie1 DNA MER1_type 1 142 -2619 266 228 0 0 chr15 98167310 98167367 -3213154 - MIR SINE MIR -84 178 122 933 224 48 84 chr15 98167373 98167828 -3212693 + MLT1J LTR MaLR 4 509 -2 316 253 46 0 chr15 98167835 98167922 -3212599 - MIR SINE MIR -144 118 28 350 225 14 0 chr15 98168415 98168486 -3212035 - MIR SINE MIR -63 145 74 254 292 71 18 chr15 98168468 98168581 -3211940 + MIR3 SINE MIR 11 129 -79 * 2003 133 147 31 chr15 98168737 98169119 -3211402 + MSTA LTR MaLR 1 426 -2 268 286 0 0 chr15 98169212 98169282 -3211239 - MER117 DNA MER1_type -127 70 1 531 268 144 66 chr15 98169687 98170202 -3210319 + L1ME4a LINE L1 5308 5856 -265 2163 125 0 0 chr15 98170231 98170520 -3210001 + AluSc SINE Alu 9 297 -12 1456 138 112 45 chr15 98170537 98170806 -3209715 + AluJo SINE Alu 22 308 -4 372 329 110 57 chr15 98170998 98171244 -3209277 + MIR SINE MIR 4 262 0 355 259 35 0 chr15 98171308 98171393 -3209128 + MLT1A1 LTR MaLR 1 88 -286 979 133 0 0 chr15 98171393 98171536 -3208985 + FRAM SINE Alu 18 160 -16 1184 199 65 18 chr15 98171536 98171812 -3208709 + MLT1A1 LTR MaLR 77 365 0 2110 126 3 0 chr15 98172370 98172671 -3207850 - AluSx SINE Alu -10 302 1 1462 167 71 14 chr15 98172841 98173123 -3207398 - MER2 DNA MER2_type -25 320 23 2428 83 0 16 chr15 98173158 98173472 -3207049 + AluSc SINE Alu 1 309 0 1994 133 36 112 chr15 98173516 98173688 -3206833 + MLT1B LTR MaLR 1 185 -205 1522 187 7 14 chr15 98173688 98173977 -3206544 + AluJo SINE Alu 4 290 -22 1994 133 36 112 chr15 98173977 98174224 -3206297 + MLT1B LTR MaLR 185 388 -2 216 0 0 0 chr15 98174418 98174442 -3206079 + (CA)n Simple_repeat Simple_repeat 2 25 0 290 125 0 0 chr15 98174840 98174888 -3205633 - L1MB8 LINE L1 0 6178 6131 879 274 67 36 chr15 98175700 98175778 -3204743 + HAL1 LINE L1 674 748 -1759 666 153 196 53 chr15 98175778 98175850 -3204671 + MER20 DNA MER1_type 1 61 -158 734 83 0 30 chr15 98175850 98175983 -3204538 + (TG)n Simple_repeat Simple_repeat 1 129 0 666 153 196 53 chr15 98175983 98176099 -3204422 + MER20 DNA MER1_type 61 216 -3 879 274 67 36 chr15 98176099 98176378 -3204143 + HAL1 LINE L1 748 1042 -1465 722 177 7 75 chr15 98176392 98176539 -3203982 + FLAM_C SINE Alu 2 138 -5 845 229 153 29 chr15 98176546 98176778 -3203743 + HAL1 LINE L1 1051 1340 -1167 2293 77 24 10 chr15 98176778 98177075 -3203446 + AluSg SINE Alu 1 301 -9 845 229 153 29 chr15 98177075 98177182 -3203339 + HAL1 LINE L1 1340 1432 -1075 924 135 25 6 chr15 98177282 98177445 -3203076 + AluY SINE Alu 129 294 -17 3284 153 51 16 chr15 98177446 98178037 -3202484 + Tigger3(Golem) DNA MER2_type 2386 3002 -27 2406 124 55 3 chr15 98178037 98178383 -3202138 + THE1B LTR MaLR 1 364 0 3284 153 51 16 chr15 98178383 98178413 -3202108 + Tigger3(Golem) DNA MER2_type 3002 3029 0 231 377 42 45 chr15 98178745 98179058 -3201463 - L2 LINE L2 -516 2798 2487 331 289 117 69 chr15 98179238 98179471 -3201050 + MLT1L LTR MaLR 113 333 -282 1845 206 89 48 chr15 98179471 98179952 -3200569 - MLT1D LTR MaLR -4 501 1 331 289 117 69 chr15 98179952 98180179 -3200342 + MLT1L LTR MaLR 333 595 -20 704 192 25 0 chr15 98180507 98180627 -3199894 - AluJb SINE Alu -188 124 2 260 265 15 0 chr15 98180700 98180768 -3199753 + MER112 DNA MER1_type 7 75 -185 886 342 102 32 chr15 98180827 98181585 -3198936 + L2 LINE L2 1501 2311 -1003 245 302 0 0 chr15 98181649 98181712 -3198809 - MIR SINE MIR -135 127 65 2469 79 0 0 chr15 98183645 98183950 -3196571 + AluY SINE Alu 1 305 -6 232 377 13 14 chr15 98186758 98186904 -3193617 - MIR SINE MIR -63 145 17 657 283 77 27 chr15 98187760 98188096 -3192425 + L1MC4a LINE L1 5691 6043 -1765 717 142 37 19 chr15 98188820 98189113 -3191408 + CT-rich Low_complexity Low_complexity 1 298 0 1514 199 4 7 chr15 98189230 98189506 -3191015 - AluJo SINE Alu -37 275 1 755 228 7 0 chr15 98190250 98190395 -3190126 - MER5A DNA MER1_type -30 159 14 2159 112 0 0 chr15 98190720 98191036 -3189485 - AluSx SINE Alu 0 316 1 230 220 0 20 chr15 98191351 98191401 -3189120 + (CA)n Simple_repeat Simple_repeat 2 50 0 961 173 0 0 chr15 98191844 98192000 -3188521 + 7SLRNA srpRNA srpRNA 94 249 -71 180 77 0 0 chr15 98193099 98193125 -3187396 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 1212 244 172 55 chr15 98195572 98196044 -3184477 + HAL1 LINE L1 1443 2004 -503 2428 53 0 0 chr15 98196044 98196374 -3184147 - AluY SINE Alu 0 330 1 1212 244 172 55 chr15 98196374 98196506 -3184015 + HAL1 LINE L1 2004 2119 -388 1678 171 80 75 chr15 98196648 98197034 -3183487 + MLT1B LTR MaLR 3 390 0 315 130 0 0 chr15 98197063 98197117 -3183404 + (TG)n Simple_repeat Simple_repeat 1 54 0 426 314 48 12 chr15 98197187 98197439 -3183082 + HAL1 LINE L1 2247 2507 0 381 272 132 52 chr15 98198017 98198230 -3182291 + MIR SINE MIR 23 252 -10 1122 198 203 17 chr15 98198292 98198727 -3181794 + MER39 LTR ERV1 7 516 -137 1466 180 27 40 chr15 98198727 98199027 -3181494 + MER4C LTR ERV1 1 296 -169 308 143 32 0 chr15 98199011 98199074 -3181447 + MER4C LTR ERV1 232 296 -169 * 308 143 32 0 chr15 98199058 98199121 -3181400 + MER4C LTR ERV1 232 296 -169 * 1264 172 13 9 chr15 98199105 98199338 -3181183 + MER4C LTR ERV1 232 465 0 675 170 89 0 chr15 98199341 98199476 -3181045 + MER39 LTR ERV1 561 707 0 904 153 0 0 chr15 98199537 98199655 -3180866 - FLAM_C SINE Alu -15 118 1 2242 128 0 0 chr15 98199657 98199963 -3180558 - AluSg SINE Alu -4 306 1 249 246 112 82 chr15 98200017 98200107 -3180414 - L2 LINE L2 -54 3259 3173 585 100 0 0 chr15 98200107 98200187 -3180334 - MADE1 DNA Mariner 0 80 1 249 246 112 82 chr15 98200187 98200328 -3180193 - L2 LINE L2 -140 3173 3021 772 137 0 0 chr15 98200428 98200530 -3179991 - FLAM_C SINE Alu -26 117 16 201 267 119 48 chr15 98200542 98200752 -3179769 - L2 LINE L2 -245 3068 2844 494 254 88 29 chr15 98200897 98201169 -3179352 + LTR16A LTR ERVL 16 303 -147 1505 209 25 28 chr15 98201421 98201780 -3178741 - MLT1A1 LTR MaLR -7 358 1 536 332 36 7 chr15 98201780 98202087 -3178434 + HERV16 LTR ERVL 177 492 -4504 264 301 68 55 chr15 98202195 98202358 -3178163 + HERV16 LTR ERVL 658 822 -4174 501 271 70 19 chr15 98202801 98203112 -3177409 + LTR16A LTR ERVL 55 443 -7 243 333 19 0 chr15 98203131 98203239 -3177282 - L1MC/D LINE L1 -2018 5790 5681 1636 157 51 0 chr15 98203246 98203539 -3176982 - MSTA LTR MaLR 0 428 121 2167 119 3 0 chr15 98203588 98203882 -3176639 + AluSq SINE Alu 1 295 -18 243 256 8 111 chr15 98203938 98204055 -3176466 - LTR41 LTR ERVL -157 616 512 652 237 24 12 chr15 98204339 98204508 -3176013 - LTR41 LTR ERVL -594 179 9 298 312 64 0 chr15 98204667 98204776 -3175745 - MIR SINE MIR -33 229 114 24 0 0 0 chr15 98204991 98205015 -3175506 + AT_rich Low_complexity Low_complexity 1 24 0 1663 169 14 0 chr15 98205965 98206243 -3174278 - AluJo SINE Alu 0 312 31 197 288 0 50 chr15 98206473 98206553 -3173968 + MIR SINE MIR 67 142 -120 369 326 7 21 chr15 98206897 98207038 -3173483 + MIR SINE MIR 69 207 -55 23 54 0 0 chr15 98207486 98207523 -3172998 + AT_rich Low_complexity Low_complexity 1 37 0 351 326 34 27 chr15 98208502 98208649 -3171872 + MIR SINE MIR 93 240 -22 * 511 307 117 0 chr15 98208640 98208838 -3171683 + MIR SINE MIR 19 236 -26 759 209 8 0 chr15 98209354 98209483 -3171038 - FLAM_C SINE Alu -3 130 1 1213 264 71 45 chr15 98209635 98210127 -3170394 - MLT1D LTR MaLR 0 505 1 2424 49 7 10 chr15 98210347 98210651 -3169870 - AluY SINE Alu -8 303 1 25 0 0 0 chr15 98211819 98211844 -3168677 + AT_rich Low_complexity Low_complexity 1 25 0 1960 169 0 7 chr15 98213013 98213321 -3167200 + L1PA16 LINE L1 5852 6157 -9 23 0 0 0 chr15 98213843 98213866 -3166655 + AT_rich Low_complexity Low_complexity 1 23 0 194 281 16 16 chr15 98215290 98215354 -3165167 - MIR3 SINE MIR -12 196 133 576 297 24 24 chr15 98216249 98216458 -3164063 - MIR SINE MIR -3 259 51 521 113 17 61 chr15 98216905 98217254 -3163267 + (TA)n Simple_repeat Simple_repeat 1 333 0 2367 67 27 0 chr15 98217336 98217634 -3162887 + AluY SINE Alu 1 306 -5 634 232 112 11 chr15 98218066 98218333 -3162188 + Charlie4a DNA MER1_type 127 420 -88 1481 246 53 33 chr15 98218575 98219031 -3161490 - MER74B LTR ERVL -84 538 74 22 0 0 0 chr15 98219046 98219068 -3161453 + GC_rich Low_complexity Low_complexity 1 22 0 468 35 0 0 chr15 98219069 98219127 -3161394 + (CA)n Simple_repeat Simple_repeat 2 59 0 438 20 0 0 chr15 98219820 98219871 -3160650 + (TA)n Simple_repeat Simple_repeat 1 51 0 2259 94 7 0 chr15 98220457 98220764 -3159757 - AluY SINE Alu -2 309 1 189 273 0 23 chr15 98220902 98220946 -3159575 - L2 LINE L2 -26 3287 3245 234 280 0 86 chr15 98221113 98221206 -3159315 + L2 LINE L2 3186 3270 -2 272 207 17 0 chr15 98221950 98222008 -3158513 + L1P LINE L1 2749 2807 -3339 23 103 0 0 chr15 98223197 98223226 -3157295 + AT_rich Low_complexity Low_complexity 1 29 0 215 200 50 33 chr15 98223226 98223346 -3157175 + (TTATA)n Simple_repeat Simple_repeat 1 122 0 395 218 29 29 chr15 98223447 98223617 -3156904 + (TATAA)n Simple_repeat Simple_repeat 2 171 0 362 257 85 65 chr15 98223709 98224016 -3156505 - L1M4 LINE L1 -2124 4022 3710 566 274 17 6 chr15 98224052 98224231 -3156290 - L1MB7 LINE L1 -12 6172 5992 27 96 0 0 chr15 98224415 98224498 -3156023 + AT_rich Low_complexity Low_complexity 1 83 0 991 32 16 0 chr15 98224642 98224795 -3155726 - AluY SINE Alu 0 311 157 279 0 0 0 chr15 98227185 98227216 -3153305 + (TG)n Simple_repeat Simple_repeat 2 32 0 204 111 0 0 chr15 98227215 98227251 -3153270 + (TA)n Simple_repeat Simple_repeat 1 36 0 * 1639 160 3 21 chr15 98230188 98230475 -3150046 - AluJo SINE Alu -21 291 10 2485 184 16 2 chr15 98231317 98231813 -3148708 - L1 LINE L1 -2369 3777 3275 1950 152 3 0 chr15 98231827 98232117 -3148404 - AluSg SINE Alu -19 291 1 1920 159 0 7 chr15 98232152 98232448 -3148073 - AluJo SINE Alu -18 294 1 674 278 87 12 chr15 98232612 98232853 -3147668 + L1ME LINE L1 5522 5780 -382 180 234 16 62 chr15 98233164 98233228 -3147293 - MIR SINE MIR -8 254 194 1230 170 21 29 chr15 98233229 98233505 -3147016 - AluJo SINE Alu 0 317 44 327 230 23 149 chr15 98233505 98233679 -3146842 - MIR SINE MIR -64 198 47 366 283 123 9 chr15 98234982 98235088 -3145433 - MIR SINE MIR -133 129 12 2562 36 0 0 chr15 98235686 98235991 -3144530 - AluY SINE Alu -6 305 1 1056 45 8 0 chr15 98235991 98236124 -3144397 - AluY SINE Alu -177 134 1 2202 78 10 3 chr15 98236896 98237190 -3143331 + AluSq SINE Alu 3 298 -15 366 283 123 9 chr15 98237497 98237603 -3142918 - MIR SINE MIR -133 129 12 2020 78 26 33 chr15 98238200 98238506 -3142015 - AluSx SINE Alu -6 306 3 236 26 0 53 chr15 98238577 98238615 -3141906 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 342 0 0 0 chr15 98239857 98239895 -3140626 + (TG)n Simple_repeat Simple_repeat 2 39 0 207 0 0 0 chr15 98240055 98240078 -3140443 + (TTTTC)n Simple_repeat Simple_repeat 1 23 0 2036 105 4 0 chr15 98240078 98240355 -3140166 - AluSg SINE Alu -32 278 1 204 40 0 0 chr15 98241523 98241548 -3138973 + (TG)n Simple_repeat Simple_repeat 2 26 0 2348 96 3 0 chr15 98241677 98241979 -3138542 - AluSq SINE Alu -10 303 1 963 183 245 9 chr15 98242445 98242768 -3137753 - Charlie1a DNA MER1_type 0 1455 1057 247 25 50 0 chr15 98242790 98242830 -3137691 + (TA)n Simple_repeat Simple_repeat 2 43 0 1174 182 0 15 chr15 98242830 98243033 -3137488 - AluJb SINE Alu -26 286 87 2642 182 188 17 chr15 98243037 98243592 -3136929 - Charlie1a DNA MER1_type -1847 914 205 1804 164 14 3 chr15 98243592 98243884 -3136637 - AluJb SINE Alu -17 295 1 2642 182 188 17 chr15 98243884 98244052 -3136469 - Charlie1a DNA MER1_type -2556 205 67 2313 92 0 13 chr15 98244568 98244872 -3135649 - AluSc SINE Alu -9 300 1 883 190 28 28 chr15 98245076 98245255 -3135266 + L1PA16 LINE L1 5984 6162 -4 24 53 0 0 chr15 98245527 98245565 -3134956 + AT_rich Low_complexity Low_complexity 1 38 0 2072 114 0 33 chr15 98245672 98245978 -3134543 + AluSx SINE Alu 1 296 -16 4932 181 22 23 chr15 98246027 98247008 -3133513 + L1MC2 LINE L1 5357 6336 -8 21 0 0 0 chr15 98247008 98247029 -3133492 + AT_rich Low_complexity Low_complexity 1 21 0 211 351 85 24 chr15 98249523 98249688 -3130833 - MIR SINE MIR -74 188 14 210 333 0 0 chr15 98249810 98249873 -3130648 - L2 LINE L2 -981 2333 2271 204 231 0 19 chr15 98250802 98250854 -3129667 + GA-rich Low_complexity Low_complexity 1 51 0 1193 300 100 64 chr15 98251475 98252549 -3127972 + L2 LINE L2 2183 3313 0 30 59 0 0 chr15 98253453 98253504 -3127017 + AT_rich Low_complexity Low_complexity 1 51 0 4944 84 0 6 chr15 98254648 98255327 -3125194 - L1PA12 LINE L1 -89 6079 5405 312 339 71 80 chr15 98257468 98257893 -3122628 - L2 LINE L2 0 3272 2852 37967 47 1 1 chr15 98258601 98264121 -3116400 - L1PA5 LINE L1 -8 6146 623 726 80 0 0 chr15 98264119 98264207 -3116314 - L1PA5 LINE L1 -6048 98 11 * 31 68 0 0 chr15 98264400 98264459 -3116062 + AT_rich Low_complexity Low_complexity 1 59 0 207 100 0 0 chr15 98266046 98266076 -3114445 + (CA)n Simple_repeat Simple_repeat 2 31 0 1991 108 0 14 chr15 98267174 98267451 -3113070 - AluSc SINE Alu -2 307 35 225 298 53 11 chr15 98268089 98268183 -3112338 + MIR SINE MIR 19 116 -92 21 36 0 0 chr15 98268220 98268248 -3112273 + AT_rich Low_complexity Low_complexity 1 28 0 456 321 145 10 chr15 98268561 98268954 -3111567 - L1MC/D LINE L1 -1987 5821 5376 573 306 57 40 chr15 98269944 98270241 -3110280 - LTR16A1 LTR ERVL -9 448 147 275 290 202 30 chr15 98271085 98271416 -3109105 + L1ME4a LINE L1 5519 5906 -215 1481 187 67 0 chr15 98271588 98271758 -3108763 - AluJb SINE Alu -7 305 107 219 88 0 0 chr15 98271758 98271792 -3108729 + (TTA)n Simple_repeat Simple_repeat 1 34 0 1481 187 67 0 chr15 98271792 98271904 -3108617 - AluJb SINE Alu -205 107 4 518 251 72 31 chr15 98271984 98272179 -3108342 - MER3 DNA MER1_type -5 204 2 337 275 53 26 chr15 98272553 98272742 -3107779 + L1ME2 LINE L1 5733 5926 -238 188 317 158 11 chr15 98272894 98273077 -3107444 + L2 LINE L2 2833 3042 -230 5526 176 16 16 chr15 98273461 98274600 -3105921 + L1MA9 LINE L1 5175 6312 0 183 80 0 0 chr15 98274725 98274750 -3105771 + (TTTTC)n Simple_repeat Simple_repeat 5 29 0 1513 147 0 51 chr15 98276430 98276703 -3103818 - AluJo SINE Alu -10 302 44 205 345 22 61 chr15 98276991 98277304 -3103217 + L2 LINE L2 2453 2753 -561 264 326 102 10 chr15 98277407 98277505 -3103016 + L2 LINE L2 3154 3260 -12 2419 84 0 7 chr15 98277773 98278082 -3102439 + AluSx SINE Alu 1 307 -5 1523 260 62 11 chr15 98278167 98278602 -3101919 - MLT1C LTR MaLR 0 467 11 361 244 24 73 chr15 98279292 98279415 -3101106 - L2 LINE L2 -7 3306 3190 540 337 56 0 chr15 98279417 98279666 -3100855 + LTR33 LTR ERVL 3 265 -256 350 292 10 0 chr15 98279766 98279862 -3100659 + LTR33 LTR ERVL 425 521 0 781 315 72 48 chr15 98279916 98280335 -3100186 + LTR16C LTR ERVL 5 433 -58 351 272 41 34 chr15 98280396 98280543 -3099978 - L2 LINE L2 -551 2763 2616 22 0 0 0 chr15 98280647 98280669 -3099852 + AT_rich Low_complexity Low_complexity 1 22 0 188 297 14 54 chr15 98280704 98280778 -3099743 - MIR SINE MIR -111 151 81 4476 173 39 10 chr15 98281536 98282120 -3098401 - L1MC3 LINE L1 -8 7777 7157 2968 86 25 23 chr15 98282120 98282563 -3097958 - MLT2A1 LTR ERVL 0 444 1 4476 173 39 10 chr15 98282563 98282871 -3097650 - L1MC3 LINE L1 -628 7157 6859 4066 230 38 18 chr15 98282961 98283303 -3097218 - L1MC3 LINE L1 -750 5396 5062 2052 117 3 7 chr15 98283303 98283609 -3096912 - AluSg SINE Alu 0 305 1 4066 230 38 18 chr15 98283609 98285447 -3095074 - L1MC3 LINE L1 -1084 5062 3995 5269 64 28 1 chr15 98286018 98286704 -3093817 + L1PA8A LINE L1 5341 6044 -87 21 36 0 0 chr15 98289184 98289212 -3091309 + AT_rich Low_complexity Low_complexity 1 28 0 275 185 15 46 chr15 98289719 98289784 -3090737 + L2 LINE L2 3250 3312 -1 237 368 66 0 chr15 98290042 98290178 -3090343 - L1MEd LINE L1 -5675 444 300 3925 230 44 48 chr15 98290261 98292255 -3088266 + L1ME1 LINE L1 3898 5878 -288 1862 233 29 89 chr15 98292258 98292980 -3087541 - L1MC4 LINE L1 -717 7325 6647 228 222 0 19 chr15 98293068 98293122 -3087399 + GA-rich Low_complexity Low_complexity 2 54 0 1169 276 125 19 chr15 98295473 98295936 -3084585 + LTR40a LTR ERVL 1 512 -7 2212 107 0 0 chr15 98296058 98296347 -3084174 + AluSx SINE Alu 1 289 -23 1407 128 0 10 chr15 98296353 98296576 -3083945 + AluSq SINE Alu 84 304 0 740 151 0 0 chr15 98296714 98296860 -3083661 - AluSg/x SINE Alu 0 309 164 1073 154 0 6 chr15 98297167 98297336 -3083185 + FRAM SINE Alu 1 168 -8 433 295 84 24 chr15 98297415 98297666 -3082855 - LTR33 LTR ERVL -5 516 251 550 173 0 70 chr15 98297819 98297975 -3082546 + FRAM SINE Alu 21 165 -11 591 313 108 13 chr15 98298057 98298520 -3082001 - LTR33 LTR ERVL -5 516 10 1832 129 11 4 chr15 98298700 98299016 -3081505 - AluSx SINE Alu 0 318 1 196 243 97 58 chr15 98300046 98300149 -3080372 - L3 LINE CR1 -899 678 572 362 291 7 66 chr15 98300204 98300355 -3080166 - HAL1 LINE L1 -1264 1243 1102 274 303 75 22 chr15 98300397 98300625 -3079896 - HAL1 LINE L1 -6 2501 2262 457 196 10 0 chr15 98303246 98303343 -3077178 - MER39 LTR ERV1 -604 103 6 340 282 24 81 chr15 98303490 98303738 -3076783 - L1M4 LINE L1 -3528 2618 2385 314 176 0 93 chr15 98304348 98304456 -3076065 - MER103 DNA DNA 0 166 69 212 369 28 28 chr15 98304900 98305041 -3075480 + MIR SINE MIR 14 154 -108 254 293 75 85 chr15 98305291 98305479 -3075042 - MIR3 SINE MIR -3 205 20 234 209 0 0 chr15 98305683 98305726 -3074795 + Tigger5 DNA MER2_type 13 55 -2268 477 195 0 0 chr15 98305736 98305823 -3074698 + Tigger5 DNA MER2_type 2237 2323 0 743 186 6 42 chr15 98306224 98306391 -3074130 - FRAM SINE Alu -7 169 9 457 254 110 0 chr15 98306650 98306768 -3073753 + MIR SINE MIR 102 232 -30 309 319 25 50 chr15 98306806 98306925 -3073596 + L2 LINE L2 3127 3242 -30 1813 69 0 0 chr15 98308490 98308707 -3071814 - AluY SINE Alu -94 217 1 1950 131 88 23 chr15 98308941 98309293 -3071228 + THE1C LTR MaLR 1 375 0 2270 104 0 0 chr15 98309841 98310138 -3070383 - AluSg SINE Alu -13 297 1 214 297 158 0 chr15 98310457 98310558 -3069963 - MIR SINE MIR -71 191 75 793 120 98 22 chr15 98311603 98311619 -3068902 + L1MA8 LINE L1 6089 6102 -189 2427 149 11 45 chr15 98311619 98312068 -3068453 - Tigger2a DNA MER2_type 0 434 1 793 120 98 22 chr15 98312068 98312234 -3068287 + L1MA8 LINE L1 6102 6285 -6 26 0 0 0 chr15 98312477 98312503 -3068018 + AT_rich Low_complexity Low_complexity 1 26 0 9994 36 2 2 chr15 98313079 98314349 -3066172 - L1PA4 LINE L1 -1164 4982 3713 7475 29 1 4 chr15 98314350 98315523 -3064998 + L1PA4 LINE L1 4984 6153 -2 579 170 57 7 chr15 98315706 98315847 -3064674 + L1MB4 LINE L1 6030 6177 -3 242 326 32 0 chr15 98315925 98316020 -3064501 + L2 LINE L2 2602 2699 -615 346 340 43 100 chr15 98316141 98316512 -3064009 + L2 LINE L2 2839 3188 -84 1962 129 3 16 chr15 98316981 98317292 -3063229 + AluY SINE Alu 1 307 -4 27 0 0 0 chr15 98317431 98317458 -3063063 + AT_rich Low_complexity Low_complexity 1 27 0 216 0 0 0 chr15 98317808 98317832 -3062689 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 200 35 35 0 chr15 98318393 98318422 -3062099 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 25 0 0 0 chr15 98318597 98318622 -3061899 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr15 98318777 98318803 -3061718 + AT_rich Low_complexity Low_complexity 1 26 0 252 122 0 0 chr15 98318896 98318937 -3061584 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 3116 110 73 12 chr15 98319008 98319490 -3061031 + MER9 LTR ERVK 1 511 0 3309 40 0 5 chr15 98319519 98319923 -3060598 - L1PA5 LINE L1 0 6154 5753 317 270 22 66 chr15 98320070 98320207 -3060314 + MIR3 SINE MIR 44 174 -34 700 215 128 99 chr15 98321457 98322020 -3058501 - HAL1 LINE L1 -1879 628 50 1210 302 213 15 chr15 98322050 98323277 -3057244 + L2 LINE L2 1818 3296 -17 879 140 60 45 chr15 98323705 98323905 -3056616 + L1MA8 LINE L1 5897 6099 -192 3340 95 35 0 chr15 98324760 98325243 -3055278 + L1PA8 LINE L1 5657 6156 -16 286 278 99 40 chr15 98325698 98325849 -3054672 + MIR SINE MIR 30 189 -73 246 105 0 0 chr15 98326115 98326153 -3054368 + (TG)n Simple_repeat Simple_repeat 1 38 0 1996 111 79 24 chr15 98327064 98327405 -3053116 - THE1B LTR MaLR -2 362 3 11457 94 13 6 chr15 98327407 98328973 -3051548 - THE1B-int LTR MaLR 0 1580 3 2082 115 72 26 chr15 98328975 98329323 -3051198 - THE1B LTR MaLR 0 364 1 475 306 85 8 chr15 98329407 98329665 -3050856 + LTR33 LTR ERVL 244 521 0 6809 161 48 30 chr15 98329708 98332171 -3048350 + L1MA8 LINE L1 3790 6285 -6 234 244 23 23 chr15 98332191 98332214 -3048307 + (CATATA)n Simple_repeat Simple_repeat 3 25 -63 2455 165 19 0 chr15 98332214 98332632 -3047889 + MSTA LTR MaLR 3 428 0 234 244 23 23 chr15 98332632 98332694 -3047827 + (CATATA)n Simple_repeat Simple_repeat 24 88 0 2039 144 155 82 chr15 98334170 98334648 -3045873 + MLT2B2 LTR ERVL 1 513 -2 234 281 16 0 chr15 98334670 98334734 -3045787 - MER5B DNA MER1_type -1 177 113 183 42 0 0 chr15 98335536 98335560 -3044961 + (CATA)n Simple_repeat Simple_repeat 4 27 0 29 0 0 0 chr15 98337119 98337148 -3043373 + AT_rich Low_complexity Low_complexity 1 29 0 454 174 0 11 chr15 98337308 98337400 -3043121 - MLT1B LTR MaLR 0 390 300 818 73 8 24 chr15 98338084 98338208 -3042313 - MSTA LTR MaLR -306 122 1 441 300 89 49 chr15 98338214 98338531 -3041990 - L1ME LINE L1 -446 5675 5343 1731 230 19 51 chr15 98338531 98339057 -3041464 - MLT1J LTR MaLR 0 511 3 441 300 89 49 chr15 98339057 98339108 -3041413 - L1ME LINE L1 -778 5343 5296 2114 175 5 31 chr15 98339129 98339351 -3041170 + MER47B DNA MER2_type 1 208 -2115 2424 82 0 7 chr15 98339351 98339655 -3040866 + AluSc SINE Alu 1 302 -7 2114 175 5 31 chr15 98339655 98339855 -3040666 + MER47B DNA MER2_type 208 412 -6 180 152 0 0 chr15 98339857 98339890 -3040631 + (TATG)n Simple_repeat Simple_repeat 2 34 0 227 255 0 0 chr15 98339896 98339943 -3040578 - MER46C DNA MER2_type -289 49 3 572 201 47 12 chr15 98339944 98340095 -3040426 - MIR SINE MIR -61 147 9 192 40 0 0 chr15 98340782 98340807 -3039714 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2904 115 8 36 chr15 98341375 98341638 -3038883 - MER4C LTR ERV1 0 465 219 2138 118 3 3 chr15 98341638 98341943 -3038578 - AluSx SINE Alu -6 306 2 2904 115 8 36 chr15 98341943 98342157 -3038364 - MER4C LTR ERV1 -246 219 1 260 273 121 73 chr15 98342306 98342390 -3038131 + MIR3 SINE MIR 30 108 -100 2232 109 26 0 chr15 98342390 98342693 -3037828 - AluSx SINE Alu -1 311 1 260 273 121 73 chr15 98342693 98342773 -3037748 + MIR3 SINE MIR 108 202 -6 557 52 13 0 chr15 98343358 98343435 -3037086 + (TTCC)n Simple_repeat Simple_repeat 1 78 0 2126 139 0 3 chr15 98343435 98343745 -3036776 - AluSq SINE Alu -4 309 1 21 0 0 0 chr15 98343946 98343967 -3036554 + AT_rich Low_complexity Low_complexity 1 21 0 2204 92 7 3 chr15 98344340 98344633 -3035888 - AluSq SINE Alu -19 294 1 2233 90 35 0 chr15 98345030 98345319 -3035202 - AluSg SINE Alu -11 299 1 564 171 40 74 chr15 98345858 98346033 -3034488 - MER69A DNA AcHobo -8 169 1 2212 117 0 0 chr15 98346497 98346796 -3033725 + AluSq SINE Alu 1 299 -14 1915 196 48 20 chr15 98347299 98347753 -3032768 + MLT1C LTR MaLR 1 467 0 193 318 23 0 chr15 98348154 98348242 -3032279 + MIR SINE MIR 63 152 -56 940 195 158 68 chr15 98349751 98350074 -3030447 - MLT2B1 LTR ERVL 0 520 169 600 191 40 6 chr15 98351076 98351249 -3029272 + L1MB7 LINE L1 3123 3301 -2845 4720 186 51 23 chr15 98351266 98352760 -3027761 + L1MB7 LINE L1 4617 6170 -14 781 213 48 43 chr15 98352763 98352970 -3027551 - L1MC4 LINE L1 -373 7669 7462 611 229 48 17 chr15 98352968 98353199 -3027322 - L1MEc LINE L1 -1778 4351 4114 * 589 250 104 0 chr15 98353205 98353369 -3027152 - L1MD2 LINE L1 -350 6009 5829 404 276 41 0 chr15 98353547 98353692 -3026829 - L1MEc LINE L1 -2524 3605 3455 528 303 78 24 chr15 98353696 98354333 -3026188 - L1MEc LINE L1 -4704 1606 935 450 300 67 28 chr15 98354893 98355073 -3025448 - L1MEc LINE L1 -5383 736 550 1883 130 39 0 chr15 98355073 98355358 -3025163 + AluSx SINE Alu 1 296 -16 2337 70 0 3 chr15 98355362 98355661 -3024860 + AluY SINE Alu 1 298 -13 341 331 61 67 chr15 98355779 98356108 -3024413 - L1MEc LINE L1 -5732 387 61 245 362 87 6 chr15 98356279 98356485 -3024036 + MIR SINE MIR 21 243 -19 * 419 240 0 146 chr15 98356475 98356708 -3023813 - L2 LINE L2 -25 3288 3090 264 280 13 0 chr15 98356738 98356813 -3023708 + L2 LINE L2 3196 3271 -1 210 216 42 105 chr15 98357300 98357490 -3023031 + (GGGTG)n Simple_repeat Simple_repeat 3 180 0 * 351 257 0 50 chr15 98357385 98357564 -3022957 + (CGGG)n Simple_repeat Simple_repeat 3 172 0 334 253 0 58 chr15 98357584 98357774 -3022747 + (CGGG)n Simple_repeat Simple_repeat 2 180 0 392 325 0 14 chr15 98357785 98358039 -3022482 + G-rich Low_complexity Low_complexity 1 250 0 303 240 0 68 chr15 98358075 98358267 -3022254 + (CGGG)n Simple_repeat Simple_repeat 2 180 0 559 168 18 44 chr15 98358799 98358912 -3021609 + MLT1D LTR MaLR 1 110 -395 462 215 0 11 chr15 98358945 98359038 -3021483 + L2 LINE L2 3221 3312 -1 189 282 51 13 chr15 98359047 98359125 -3021396 - MIR SINE MIR -64 198 118 1426 198 32 49 chr15 98359129 98359530 -3020991 + MLT1D LTR MaLR 112 374 0 669 233 91 12 chr15 98359587 98359840 -3020681 - L1MEd LINE L1 -3499 2630 2358 697 191 118 0 chr15 98360073 98360225 -3020296 + MER5A DNA MER1_type 17 186 -3 22 0 0 0 chr15 98360263 98360285 -3020236 + AT_rich Low_complexity Low_complexity 1 22 0 1145 270 160 52 chr15 98360316 98360905 -3019616 - L1MEd LINE L1 -5219 900 198 1928 148 0 13 chr15 98360905 98361210 -3019311 + AluSx SINE Alu 1 301 -11 1145 270 160 52 chr15 98361210 98361431 -3019090 - L1MEd LINE L1 -5921 198 2 332 370 123 32 chr15 98363416 98363667 -3016854 + L1MC/D LINE L1 5500 5773 -2035 258 234 47 0 chr15 98364343 98364407 -3016114 + L2 LINE L2 3204 3270 -2 477 295 85 56 chr15 98364930 98365321 -3015200 + MLT1J2 LTR MaLR 1 407 -2 816 210 12 0 chr15 98365390 98365557 -3014964 - FAM SINE Alu -6 43 1 1407 161 52 7 chr15 98365570 98365861 -3014660 - L1MB8 LINE L1 0 6178 5875 1805 145 47 0 chr15 98365888 98366063 -3014458 - AluSx SINE Alu -1 311 115 183 42 0 0 chr15 98366063 98366087 -3014434 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1805 145 47 0 chr15 98366087 98366208 -3014313 - AluSx SINE Alu -197 115 1 2613 208 77 11 chr15 98366212 98367016 -3013505 - L1MB8 LINE L1 -698 5486 4639 1094 169 56 60 chr15 98367028 98367294 -3013227 - AluJo SINE Alu -47 265 1 308 194 0 54 chr15 98367294 98367387 -3013134 - L1MB8 LINE L1 -1495 4651 4564 * 8578 178 39 25 chr15 98367386 98370023 -3010498 - L1MA9 LINE L1 -277 7056 4214 1852 151 0 0 chr15 98370023 98370350 -3010171 - AluSx SINE Alu 0 327 1 8578 178 39 25 chr15 98370350 98370491 -3010030 - L1MA9 LINE L1 -3119 4214 4076 1151 138 11 11 chr15 98370516 98370704 -3009817 - AluSg/x SINE Alu -9 303 116 10925 222 49 28 chr15 98370711 98372359 -3008162 - L1MA9 LINE L1 -3762 3405 1794 1306 172 3 150 chr15 98372359 98372713 -3007808 - AluJb SINE Alu 0 302 1 10925 222 49 28 chr15 98372713 98374673 -3005848 - L1MA9 LINE L1 -5373 1794 2 353 190 50 25 chr15 98374675 98374796 -3005725 - L1MEc LINE L1 -2160 4266 4143 1141 229 17 0 chr15 98374856 98375087 -3005434 + MLT1D LTR MaLR 1 235 -270 312 176 0 0 chr15 98375106 98375157 -3005364 + MLT1D LTR MaLR 451 501 -4 3635 228 38 23 chr15 98375161 98375312 -3005209 - L1MEc LINE L1 -2289 4137 3990 1882 145 16 23 chr15 98375312 98375622 -3004899 - AluJo SINE Alu -4 308 1 3635 228 38 23 chr15 98375622 98377289 -3003232 - L1MEc LINE L1 -2436 3990 2118 360 0 0 0 chr15 98377336 98377376 -3003145 + (TA)n Simple_repeat Simple_repeat 1 40 0 2086 107 37 0 chr15 98377380 98377680 -3002841 - AluSx SINE Alu -1 311 1 399 292 47 35 chr15 98377689 98377860 -3002661 - MIR SINE MIR -76 186 14 1964 106 46 0 chr15 98378117 98378400 -3002121 - AluSg1 SINE Alu -13 296 1 5646 144 41 14 chr15 98378436 98378759 -3001762 - L1MA8 LINE L1 -20 6271 5958 2196 107 0 0 chr15 98378759 98379057 -3001464 - AluSx SINE Alu -14 298 1 5646 144 41 14 chr15 98379057 98380599 -2999922 - L1MA8 LINE L1 -333 5958 4351 299 243 81 9 chr15 98380694 98380805 -2999716 - L1MEc LINE L1 -4491 1937 1819 294 296 43 43 chr15 98381931 98382046 -2998475 - MIR SINE MIR -25 237 123 1320 199 71 60 chr15 98382903 98383285 -2997236 + MLT1B LTR MaLR 1 386 -4 368 207 61 12 chr15 98383756 98383838 -2996683 + L2 LINE L2 3153 3238 -34 234 250 19 0 chr15 98383875 98383927 -2996594 + L2 LINE L2 3252 3304 -9 209 311 48 58 chr15 98384355 98384458 -2996063 + MIR SINE MIR 18 119 -89 244 324 76 0 chr15 98384783 98384888 -2995633 - L2 LINE L2 0 3313 3201 205 266 55 39 chr15 98384916 98385044 -2995477 + L2 LINE L2 2892 3021 -251 2260 215 52 2 chr15 98385748 98386246 -2994275 - MER74A LTR ERVL -30 528 6 788 129 73 0 chr15 98387057 98387181 -2993340 + FLAM_C SINE Alu 1 133 0 270 178 60 25 chr15 98387496 98387586 -2992935 - L1MEc LINE L1 -4924 1683 1417 2151 110 0 0 chr15 98387725 98388025 -2992496 - AluSx SINE Alu -12 300 1 232 294 113 40 chr15 98388842 98389019 -2991502 + MARNA DNA Mariner 54 243 -343 201 167 24 0 chr15 98389739 98389781 -2990740 + GA-rich Low_complexity Low_complexity 4 46 0 1635 123 134 0 chr15 98390072 98390340 -2990181 - AluSx SINE Alu -8 304 1 1581 158 17 30 chr15 98390491 98390788 -2989733 - AluJo SINE Alu -19 293 1 2200 106 0 3 chr15 98391315 98391617 -2988904 + AluSx SINE Alu 1 301 -11 491 301 154 33 chr15 98392018 98392294 -2988227 - L2 LINE L2 -345 2969 2728 1621 206 43 11 chr15 98392294 98392644 -2987877 + MLT1A1 LTR MaLR 5 365 0 491 301 154 33 chr15 98392644 98392879 -2987642 - L2 LINE L2 -586 2728 2396 329 193 80 34 chr15 98393259 98393347 -2987174 + HERV16 LTR ERVL 1 92 -4904 1943 295 89 36 chr15 98393579 98394252 -2986269 + HERV16 LTR ERVL 393 1151 -3845 2179 108 0 0 chr15 98394252 98394548 -2985973 + AluSx SINE Alu 1 296 -16 1943 295 89 36 chr15 98394548 98394995 -2985526 + HERV16 LTR ERVL 1151 1573 -3423 2761 280 102 41 chr15 98395100 98395551 -2984970 + HERV16 LTR ERVL 1729 2151 -2845 3791 133 27 71 chr15 98395551 98395608 -2984913 + LTR62 LTR ERVK 1 59 -660 1816 88 8 23 chr15 98395608 98395870 -2984651 - AluSg SINE Alu -12 298 41 3791 133 27 71 chr15 98395870 98396320 -2984201 + LTR62 LTR ERVK 59 467 -252 2001 104 0 0 chr15 98396320 98396589 -2983932 - AluSx SINE Alu -28 284 16 3791 133 27 71 chr15 98396589 98396831 -2983690 + LTR62 LTR ERVK 467 718 -1 2761 280 102 41 chr15 98396831 98397414 -2983107 + HERV16 LTR ERVL 2151 2848 -2148 2098 84 0 30 chr15 98397414 98397713 -2982808 - AluSc SINE Alu -19 290 1 2761 280 102 41 chr15 98397713 98397868 -2982653 + HERV16 LTR ERVL 2848 2992 -2004 226 174 14 43 chr15 98398182 98398251 -2982270 + MLT1G1-int LTR MaLR 1638 1704 -31 1752 190 56 10 chr15 98398251 98398696 -2981825 + MLT2B2 LTR ERVL 1 515 0 853 278 131 20 chr15 98398707 98399128 -2981393 + MLT1G1 LTR MaLR 11 512 -83 232 269 19 0 chr15 98399125 98399177 -2981344 + LTR16A LTR ERVL 229 281 -169 * 329 298 68 19 chr15 98399230 98399391 -2981130 - L2 LINE L2 -1056 2258 2090 182 268 18 0 chr15 98399491 98399547 -2980974 - L2 LINE L2 -1407 1907 1851 1668 151 63 18 chr15 98400291 98400576 -2979945 - AluJo SINE Alu -14 298 1 2364 76 0 0 chr15 98401786 98402076 -2978445 + AluY SINE Alu 1 290 -21 2313 102 0 3 chr15 98405036 98405331 -2975190 - AluSx SINE Alu -18 294 1 952 215 174 16 chr15 98406357 98406678 -2973843 + MLT1A2 LTR MaLR 1 372 -2 333 0 0 0 chr15 98407170 98407207 -2973314 + (TA)n Simple_repeat Simple_repeat 1 37 0 2351 103 0 13 chr15 98407208 98407518 -2973003 - AluSx SINE Alu -4 308 3 190 194 0 0 chr15 98408357 98408393 -2972128 + MER5A DNA MER1_type 59 94 -95 256 218 141 128 chr15 98408542 98408698 -2971823 + MER5B DNA MER1_type 17 174 -4 2425 88 0 0 chr15 98408913 98409207 -2971314 + AluSg SINE Alu 1 294 -16 2166 146 0 0 chr15 98409843 98410145 -2970376 + AluSx SINE Alu 1 302 -10 1642 71 0 5 chr15 98411085 98411283 -2969238 - AluY SINE Alu -94 217 21 680 67 0 0 chr15 98411283 98411372 -2969149 - AluY SINE Alu -221 90 2 6081 155 36 11 chr15 98411376 98412428 -2968093 + HUERS-P3 LTR ERV1 749 1827 -7092 2074 122 0 14 chr15 98412883 98413192 -2967329 - AluSx SINE Alu 0 305 1 527 182 5 43 chr15 98413963 98414150 -2966371 + GA-rich Low_complexity Low_complexity 1 180 0 529 227 121 0 chr15 98414247 98414379 -2966142 - MIR SINE MIR -1 261 114 14621 218 19 3 chr15 98414379 98418659 -2961862 - L1PB1 LINE L1 -287 6580 2175 501 139 0 61 chr15 98418769 98418934 -2961587 + (TCCC)n Simple_repeat Simple_repeat 2 156 0 2515 105 8 3 chr15 98419929 98420291 -2960230 - THE1B LTR MaLR 0 364 1 245 313 151 22 chr15 98420576 98420755 -2959766 - MIR SINE MIR -33 229 28 1912 171 0 3 chr15 98421056 98421361 -2959160 + AluJo SINE Alu 2 305 -7 920 78 0 47 chr15 98422648 98422776 -2957745 + AluSp/q SINE Alu 176 297 -16 182 353 0 0 chr15 98423423 98423491 -2957030 + MIR SINE MIR 182 249 -13 406 205 18 62 chr15 98423872 98423984 -2956537 + MLT1D LTR MaLR 1 107 -398 2210 173 47 13 chr15 98423988 98424214 -2956307 + MLT1C LTR MaLR 1 218 -249 270 0 0 0 chr15 98424214 98424244 -2956277 + (CTGGGG)n Simple_repeat Simple_repeat 3 32 0 2210 173 47 13 chr15 98424244 98424469 -2956052 + MLT1C LTR MaLR 218 467 0 1366 190 44 86 chr15 98424567 98424952 -2955569 + MLT1D LTR MaLR 128 496 -9 938 142 0 0 chr15 98425138 98425272 -2955249 + AluSq/x SINE Alu 1 134 -179 2230 118 3 0 chr15 98425273 98425577 -2954944 + AluSx SINE Alu 1 305 -7 2440 159 68 0 chr15 98426147 98426620 -2953901 - L1MB3 LINE L1 0 6183 5679 197 362 76 36 chr15 98427937 98428161 -2952360 + L3 LINE CR1 807 1039 -538 2060 123 6 43 chr15 98428178 98428502 -2952019 - AluSx SINE Alu 0 312 1 1264 192 76 33 chr15 98428502 98428804 -2951717 - L1MC1 LINE L1 -8 6325 6011 1785 183 19 0 chr15 98429033 98429432 -2951089 - L1PB1 LINE L1 -5219 1644 1094 3556 220 63 6 chr15 98429437 98430336 -2950185 - L1PB1 LINE L1 -5818 1045 95 367 227 21 10 chr15 98430326 98430423 -2950098 - L1MC1 LINE L1 -654 5530 5433 * 2043 160 13 3 chr15 98430427 98430803 -2949718 - L1MB3 LINE L1 -1 6182 5803 406 310 123 29 chr15 98430803 98430897 -2949624 + L1ME LINE L1 5282 5366 -804 1933 143 135 5 chr15 98430897 98431275 -2949246 + MSTA LTR MaLR 2 428 0 406 310 123 29 chr15 98431275 98431629 -2948892 + L1ME LINE L1 5366 5772 -398 431 306 46 6 chr15 98432144 98432317 -2948204 - Charlie8 DNA MER1_type -2234 183 4 327 236 127 18 chr15 98434564 98434674 -2945847 + MIR3 SINE MIR 33 154 -54 22 35 0 0 chr15 98435318 98435347 -2945174 + AT_rich Low_complexity Low_complexity 1 29 0 2102 110 10 23 chr15 98435742 98436043 -2944478 - AluSq SINE Alu -16 297 1 245 197 0 0 chr15 98436424 98436485 -2944036 - L1ME4a LINE L1 -12 6109 6049 1584 168 14 25 chr15 98436628 98436908 -2943613 - AluJo SINE Alu -10 302 26 181 219 0 0 chr15 98437534 98437566 -2942955 - MIR SINE MIR -99 109 78 428 295 86 13 chr15 98437622 98437937 -2942584 - L1M4 LINE L1 -3630 2516 2179 2456 78 3 7 chr15 98437938 98438246 -2942275 - AluSq SINE Alu -1 312 6 2273 211 91 43 chr15 98438451 98438959 -2941562 - L1ME3A LINE L1 0 6170 5617 2104 147 122 5 chr15 98438959 98439361 -2941160 + LTR47A LTR ERVL 4 452 0 2273 211 91 43 chr15 98439361 98439569 -2940952 - L1ME3A LINE L1 -553 5617 5420 458 298 78 58 chr15 98439789 98440014 -2940507 - HAL1b LINE L1 -500 848 612 1008 243 18 0 chr15 98440014 98440232 -2940289 + MER58A DNA MER1_type 3 224 0 458 298 78 58 chr15 98440232 98440352 -2940169 - HAL1b LINE L1 -736 612 496 182 434 13 0 chr15 98440620 98440696 -2939825 - L3 LINE CR1 -1062 515 439 186 406 56 21 chr15 98440780 98441014 -2939507 - L3 LINE CR1 -1272 305 64 437 286 153 5 chr15 98441083 98441279 -2939242 - MIR SINE MIR -17 245 21 640 260 19 0 chr15 98442373 98442527 -2937994 + MER5A DNA MER1_type 3 159 -30 469 180 80 10 chr15 98444289 98444389 -2936132 + MIR SINE MIR 70 176 -86 211 303 50 30 chr15 98446821 98446920 -2933601 - MIR SINE MIR 0 262 162 422 223 0 11 chr15 98447948 98448042 -2932479 + MIR SINE MIR 56 148 -114 180 296 99 14 chr15 98448295 98448366 -2932155 + L2 LINE L2 3191 3267 -5 216 0 0 0 chr15 98449589 98449613 -2930908 + (CTG)n Simple_repeat Simple_repeat 3 26 0 2183 194 62 0 chr15 98450415 98450816 -2929705 + MSTB LTR MaLR 1 426 0 209 328 0 0 chr15 98451426 98451487 -2929034 + MIR SINE MIR 92 152 -110 191 298 0 105 chr15 98452137 98452251 -2928270 - MIR SINE MIR -47 215 114 1584 165 11 11 chr15 98452337 98452610 -2927911 - AluJb SINE Alu -39 273 1 283 263 212 7 chr15 98453073 98453124 -2927397 - Charlie8 DNA MER1_type -2252 165 126 7301 63 0 2 chr15 98453124 98454463 -2926058 + L1PA8 LINE L1 4822 6159 -13 283 263 212 7 chr15 98454463 98454548 -2925973 - Charlie8 DNA MER1_type -2291 126 1 198 315 99 18 chr15 98455509 98455620 -2924901 - L2 LINE L2 0 3272 3153 832 144 15 8 chr15 98456608 98456740 -2923781 + FLAM_C SINE Alu 1 133 0 2275 84 3 0 chr15 98456833 98457132 -2923389 - AluSg SINE Alu -5 305 6 1474 105 5 0 chr15 98458328 98458528 -2921993 - AluSq SINE Alu -13 300 100 22 0 0 0 chr15 98459719 98459741 -2920780 + GC_rich Low_complexity Low_complexity 1 22 0 2234 90 0 3 chr15 98460602 98460903 -2919618 + AluSx SINE Alu 9 308 -4 759 263 87 72 chr15 98461376 98462109 -2918412 - L2 LINE L2 -3 3310 2553 227 330 9 43 chr15 98462288 98462403 -2918118 + MIR SINE MIR 152 262 0 252 271 226 15 chr15 98462497 98462630 -2917891 - L3 LINE CR1 -210 1367 1207 2161 111 3 0 chr15 98462789 98463086 -2917435 - AluSq SINE Alu -15 298 1 273 154 39 0 chr15 98513610 98513662 -2866859 + L1M4c LINE L1 1725 1778 -4606 248 263 0 0 chr15 98513662 98513719 -2866802 + LTR41 LTR ERVL 148 204 -569 235 254 211 35 chr15 98513841 98513983 -2866538 + LTR41 LTR ERVL 410 576 -197 561 175 6 88 chr15 98514053 98514213 -2866308 + LTR41 LTR ERVL 584 730 -43 1899 149 51 6 chr15 98514427 98514743 -2865778 - Tigger2 DNA MER2_type -10 2708 2379 353 248 139 0 chr15 98515742 98515843 -2864678 - MIR SINE MIR -106 156 42 284 215 65 56 chr15 98516557 98516664 -2863857 - MIR3 SINE MIR -23 185 78 210 271 106 12 chr15 98517057 98517142 -2863379 + MER91A DNA MER1_type 58 150 -46 2000 128 62 43 chr15 98517503 98517871 -2862650 + THE1C LTR MaLR 1 375 0 15093 36 7 0 chr15 98518969 98521579 -2858942 + L1PA4 LINE L1 3559 6152 -3 413 276 10 153 chr15 98521818 98522021 -2858500 - MER5B DNA MER1_type -2 176 3 3049 126 121 7 chr15 98522037 98522584 -2857937 - LTR36 LTR ERV1 0 611 3 419 219 164 48 chr15 98522613 98522759 -2857762 + MER5A DNA MER1_type 26 188 -1 2676 129 60 103 chr15 98522797 98523413 -2857108 - LTR10A LTR ERV1 0 633 1 668 239 13 13 chr15 98523417 98523572 -2856949 + MER5B DNA MER1_type 24 178 0 236 234 31 16 chr15 98523928 98523992 -2856529 - L2 LINE L2 -1 3271 3207 2123 106 0 7 chr15 98527622 98527925 -2852596 - AluSg SINE Alu -9 301 1 7536 27 22 0 chr15 98528652 98529582 -2850939 - L1PA4 LINE L1 0 6155 5221 913 226 22 6 chr15 98529812 98529993 -2850528 + MER20 DNA MER1_type 32 215 -4 1800 193 177 22 chr15 98530012 98530422 -2850099 + L1MD3 LINE L1 7404 7908 -87 2246 109 0 0 chr15 98530422 98530734 -2849787 - AluSx SINE Alu 0 312 1 1800 193 177 22 chr15 98530734 98530827 -2849694 + L1MD3 LINE L1 7908 7985 -10 258 81 0 0 chr15 98530891 98530928 -2849593 + (CA)n Simple_repeat Simple_repeat 2 38 0 340 304 43 0 chr15 98531015 98531130 -2849391 - MIR SINE MIR -19 243 124 196 313 82 61 chr15 98532482 98532629 -2847892 + MER5A DNA MER1_type 40 189 0 578 284 161 5 chr15 98532944 98533162 -2847359 - MIR SINE MIR -5 257 6 646 311 5 0 chr15 98535166 98535372 -2845149 + MER3 DNA MER1_type 3 209 0 332 258 31 21 chr15 98536918 98537015 -2843506 - ORSL DNA AcHobo -157 118 21 459 192 0 0 chr15 98537137 98537210 -2843311 - L2 LINE L2 0 3313 3241 250 318 47 0 chr15 98538422 98538551 -2841970 + MARNA DNA Mariner 400 534 -52 583 318 108 18 chr15 98538629 98539299 -2841222 - L1M4 LINE L1 -1439 4707 3978 219 351 48 30 chr15 98539343 98539511 -2841010 + MIR3 SINE MIR 38 208 0 246 317 106 8 chr15 98539552 98539675 -2840846 - L2 LINE L2 -1 3271 3137 787 192 111 0 chr15 98539708 98539880 -2840641 + MER3 DNA MER1_type 1 191 -18 230 214 157 29 chr15 98540632 98540702 -2839819 - L1M1 LINE L1 -6302 1263 1185 1666 243 41 46 chr15 98541758 98541848 -2838673 + L1ME3A LINE L1 5075 5164 -1006 2469 54 0 0 chr15 98541848 98542144 -2838377 - AluY SINE Alu -15 296 1 1666 243 41 46 chr15 98542144 98542867 -2837654 + L1ME3A LINE L1 5164 5988 -182 322 330 134 50 chr15 98543313 98543919 -2836602 + HAL1b LINE L1 229 885 -463 749 257 93 58 chr15 98544834 98545297 -2835224 + L1MEd LINE L1 709 1187 -4932 240 208 38 0 chr15 98545363 98545416 -2835105 + MLT1F LTR MaLR 21 75 -467 290 289 145 0 chr15 98545486 98545652 -2834869 + L1ME1 LINE L1 5941 6130 -36 1326 227 46 46 chr15 98546414 98546687 -2833834 - Charlie4a DNA MER1_type -1496 465 190 2078 109 7 0 chr15 98546687 98546980 -2833541 + AluSx SINE Alu 1 295 -17 1326 227 46 46 chr15 98546980 98547159 -2833362 - Charlie4a DNA MER1_type -1770 191 13 444 206 36 67 chr15 98548188 98548308 -2832213 - L1MEc LINE L1 -4271 2125 2010 2125 111 0 0 chr15 98548308 98548605 -2831916 + AluSq SINE Alu 1 297 -16 444 206 36 67 chr15 98548605 98548649 -2831872 - L1MEc LINE L1 -4386 2010 1966 8786 58 3 4 chr15 98548656 98549728 -2830793 + MER11C LTR ERVK 1 1071 0 1573 122 88 71 chr15 98549727 98550105 -2830416 - Tigger3(Golem) DNA MER2_type -2 3027 1 296 192 41 27 chr15 98550105 98550178 -2830343 - L1MEc LINE L1 -4428 1968 1895 2073 149 140 9 chr15 98550208 98550630 -2829891 - MLT1D LTR MaLR 0 505 29 644 277 62 5 chr15 98550671 98550866 -2829655 - L1MEc LINE L1 -4525 1871 1666 717 263 11 0 chr15 98550969 98551155 -2829366 - L1M4 LINE L1 -1963 4681 4494 * 3044 251 78 10 chr15 98551146 98552256 -2828265 - L1M4 LINE L1 -2704 3940 2756 596 174 0 0 chr15 98554521 98554613 -2825908 - Tigger7 DNA MER2_type 0 2491 2400 * 2871 171 52 8 chr15 98554607 98555111 -2825410 - Tigger7 DNA MER2_type -1961 526 1 254 203 0 14 chr15 98555121 98555190 -2825331 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 677 264 60 10 chr15 98555749 98555950 -2824571 + MER58C DNA MER1_type 5 215 0 755 273 91 27 chr15 98556384 98556823 -2823698 - L1M4 LINE L1 -4925 1617 1151 479 325 48 37 chr15 98557109 98557380 -2823141 - L2 LINE L2 -213 3100 2827 2430 109 113 71 chr15 98557699 98558194 -2822327 + LTR10A LTR ERV1 30 545 -64 279 276 45 8 chr15 98558735 98558869 -2821652 + MIR SINE MIR 47 185 -77 262 313 145 22 chr15 98560282 98560461 -2820060 + MIR SINE MIR 47 247 -15 419 343 6 6 chr15 98560702 98560880 -2819641 + (TG)n Simple_repeat Simple_repeat 1 178 0 195 100 0 0 chr15 98561170 98561200 -2819321 + (T)n Simple_repeat Simple_repeat 1 30 0 1946 134 0 10 chr15 98561720 98562010 -2818511 + AluSx SINE Alu 1 287 -25 2293 103 0 0 chr15 98562260 98562560 -2817961 + AluSx SINE Alu 1 300 -12 1902 137 63 38 chr15 98565344 98565710 -2814811 - THE1C LTR MaLR 0 375 1 182 278 69 28 chr15 98566030 98566102 -2814419 + L2 LINE L2 3194 3268 -4 2294 85 0 3 chr15 98566333 98566626 -2813895 - AluSc SINE Alu -9 300 9 1357 203 63 0 chr15 98566888 98567174 -2813347 - L1MB1 LINE L1 -1 6167 5864 3269 188 19 5 chr15 98567180 98567804 -2812717 + L1MB1 LINE L1 5254 5886 -282 574 158 22 44 chr15 98570815 98570998 -2809523 + (TA)n Simple_repeat Simple_repeat 1 179 0 571 215 29 0 chr15 98571012 98571184 -2809337 + (TA)n Simple_repeat Simple_repeat 1 177 0 565 216 6 6 chr15 98571198 98571374 -2809147 + (TA)n Simple_repeat Simple_repeat 1 176 0 313 264 23 0 chr15 98571376 98571463 -2809058 + L1MC4 LINE L1 6615 6703 -1339 333 162 0 0 chr15 98571466 98571534 -2808987 + (TA)n Simple_repeat Simple_repeat 1 68 0 235 200 0 36 chr15 98571569 98571624 -2808897 + (CATA)n Simple_repeat Simple_repeat 3 55 0 24 53 0 0 chr15 98571914 98571952 -2808569 + AT_rich Low_complexity Low_complexity 1 38 0 1958 225 75 8 chr15 98572052 98572571 -2807950 + L1MB8 LINE L1 4405 4958 -1188 1492 136 86 46 chr15 98572575 98572855 -2807666 + AluJb SINE Alu 5 295 -17 2591 213 94 28 chr15 98572856 98572926 -2807595 + L1MB8 LINE L1 5201 5265 -913 2034 127 10 3 chr15 98572926 98573218 -2807303 + AluSx SINE Alu 1 294 -18 2591 213 94 28 chr15 98573218 98574032 -2806489 + L1MB8 LINE L1 5265 6178 0 212 267 0 0 chr15 98577799 98577859 -2802662 - MIR SINE MIR -111 151 92 183 286 79 0 chr15 98578828 98578891 -2801630 + L2 LINE L2 3205 3272 0 206 244 174 43 chr15 98579479 98579594 -2800927 + MIR SINE MIR 77 206 -56 595 171 0 0 chr15 98580484 98580572 -2799949 - 5S rRNA rRNA -31 90 3 542 282 65 60 chr15 98580576 98581117 -2799404 - L1M4 LINE L1 -1989 4157 3639 493 308 149 34 chr15 98581495 98582079 -2798442 - HAL1b LINE L1 -462 886 236 2228 125 3 0 chr15 98582414 98582726 -2797795 - AluSq SINE Alu 0 313 1 318 236 99 24 chr15 98583269 98583420 -2797101 - L1ME LINE L1 -297 5867 5695 * 6925 200 46 8 chr15 98583412 98583545 -2796976 + L1MB8 LINE L1 3715 3842 -2336 1930 130 0 57 chr15 98583545 98583861 -2796660 + AluSx SINE Alu 1 298 -14 6925 200 46 8 chr15 98583861 98585974 -2794547 + L1MB8 LINE L1 3842 6046 -132 10875 59 25 4 chr15 98585981 98587351 -2793170 + HERVL-A1 LTR ERVL 4255 5654 0 2931 87 20 5 chr15 98587351 98587743 -2792778 + MLT2A1 LTR ERVL 1 398 -46 511 170 60 10 chr15 98587823 98587923 -2792598 + L1MB8 LINE L1 6074 6178 0 390 315 45 18 chr15 98588061 98588283 -2792238 - L1ME LINE L1 -625 5545 5318 2297 87 0 13 chr15 98588446 98588745 -2791776 - AluSc SINE Alu -14 295 1 1183 172 0 32 chr15 98588767 98588988 -2791533 - AluJb SINE Alu -17 295 82 398 286 52 14 chr15 98588993 98589206 -2791315 - HAL1 LINE L1 -1424 1083 863 724 286 71 30 chr15 98589390 98589729 -2790792 + MLT1I LTR MaLR 13 365 -44 41433 53 3 1 chr15 98590245 98595366 -2785155 + L1P LINE L1 8 5136 -1010 479 169 45 179 chr15 98595547 98595595 -2784926 - MER33 DNA MER1_type -2261 324 271 2266 117 3 0 chr15 98595595 98595894 -2784627 - AluSx SINE Alu -12 300 1 479 169 45 179 chr15 98595894 98596153 -2784368 - MER33 DNA MER1_type -2314 271 58 1559 225 42 98 chr15 98596162 98596681 -2783840 - L1ME LINE L1 -5464 606 127 2081 117 4 0 chr15 98596681 98596962 -2783559 - AluSx SINE Alu -25 287 6 1559 225 42 98 chr15 98596962 98597078 -2783443 - L1ME LINE L1 -5943 127 6 8325 66 8 14 chr15 98597303 98598380 -2782141 + MER11C LTR ERVK 1 1071 0 234 0 0 0 chr15 98599376 98599402 -2781119 + (T)n Simple_repeat Simple_repeat 1 26 0 382 270 39 90 chr15 98600473 98600726 -2779795 + MIR SINE MIR 3 245 -17 273 296 53 45 chr15 98601804 98601936 -2778585 - MIR SINE MIR -56 152 20 547 259 105 12 chr15 98606586 98606748 -2773773 - MIR SINE MIR -52 210 34 2080 133 3 69 chr15 98607148 98607509 -2773012 - MER1B DNA MER1_type 0 337 1 279 321 62 36 chr15 98607605 98607798 -2772723 - L2 LINE L2 -81 3191 2994 299 247 200 32 chr15 98608498 98608688 -2771833 + MLT1K LTR MaLR 256 477 -111 522 248 67 13 chr15 98609729 98609878 -2770643 + MER63A DNA MER1_type 26 182 -28 2358 152 58 48 chr15 98614647 98615109 -2765412 + MLT1C LTR MaLR 1 467 0 303 273 107 69 chr15 98615756 98615972 -2764549 - L1ME4a LINE L1 -4 6117 5894 457 287 44 52 chr15 98616148 98616396 -2764125 - L1M4 LINE L1 -1909 4237 3991 3758 70 0 8 chr15 98616396 98616883 -2763638 - L1PA8 LINE L1 0 6172 5690 457 287 44 52 chr15 98616883 98616996 -2763525 - L1M4 LINE L1 -2155 3991 3879 21 0 0 0 chr15 98617074 98617095 -2763426 + AT_rich Low_complexity Low_complexity 1 21 0 455 320 127 27 chr15 98617113 98617430 -2763091 - L1MDa LINE L1 -4444 2096 1765 25607 54 4 0 chr15 98618464 98621780 -2758741 + L1P LINE L1 6 3333 -2813 21 0 0 0 chr15 98622357 98622378 -2758143 + AT_rich Low_complexity Low_complexity 1 21 0 198 107 0 0 chr15 98622515 98622543 -2757978 - MIR SINE MIR -118 144 117 2119 109 3 45 chr15 98622675 98622809 -2757712 + AluSx SINE Alu 1 139 -173 2316 82 4 0 chr15 98622809 98623123 -2757398 + AluY SINE Alu 1 315 0 2119 109 3 45 chr15 98623123 98623298 -2757223 + AluSx SINE Alu 139 298 -14 754 202 6 22 chr15 98623962 98624145 -2756376 + L1M4 LINE L1 4939 5118 -1028 1194 179 71 113 chr15 98626401 98626808 -2753713 + MLT1B LTR MaLR 1 390 0 413 255 69 54 chr15 98627902 98628106 -2752415 + L1ME3A LINE L1 5963 6169 -1 228 135 0 0 chr15 98628498 98628535 -2751986 + (A)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr15 98628979 98629000 -2751521 + AT_rich Low_complexity Low_complexity 1 21 0 2128 59 12 0 chr15 98629388 98629644 -2750877 + AluY SINE Alu 52 310 -1 783 290 12 28 chr15 98629698 98629946 -2750575 - MIR SINE MIR -7 255 12 230 336 35 17 chr15 98629949 98630065 -2750456 + Charlie8 DNA MER1_type 1 118 -2299 2017 125 20 23 chr15 98630068 98630204 -2750317 + AluSx SINE Alu 1 136 -176 2371 72 3 0 chr15 98630204 98630537 -2749984 + AluY SINE Alu 1 311 0 2017 125 20 23 chr15 98630537 98630705 -2749816 + AluSx SINE Alu 136 304 -8 383 352 32 6 chr15 98630762 98631100 -2749421 + L1ME LINE L1 4887 5233 -913 374 306 46 20 chr15 98631118 98631314 -2749207 + L1ME LINE L1 5384 5584 -578 529 224 77 19 chr15 98631492 98631648 -2748873 - MIR SINE MIR -84 178 14 21 36 0 0 chr15 98632465 98632493 -2748028 + AT_rich Low_complexity Low_complexity 1 28 0 27 49 0 0 chr15 98633878 98633919 -2746602 + AT_rich Low_complexity Low_complexity 1 41 0 449 279 153 7 chr15 98635401 98635624 -2744897 + MIR SINE MIR 1 252 -10 259 307 0 11 chr15 98637687 98637775 -2742746 + MIR SINE MIR 170 256 -6 655 270 0 7 chr15 98637829 98637977 -2742544 - MER5B DNA MER1_type -4 174 28 2784 213 89 9 chr15 98638000 98638700 -2741821 - L1MD2 LINE L1 -55 6698 5943 * 3062 220 56 60 chr15 98638693 98640438 -2740083 - L1MD2 LINE L1 -3047 3493 1763 5868 127 58 4 chr15 98640459 98642289 -2738232 - L1MA3 LINE L1 0 7724 5796 * 9278 154 21 18 chr15 98642287 98643574 -2736947 - L1MA3 LINE L1 -5915 1650 355 1798 125 99 37 chr15 98643574 98643927 -2736594 - THE1C LTR MaLR 0 375 1 9278 154 21 18 chr15 98643927 98644277 -2736244 - L1MA3 LINE L1 -7210 355 8 2362 209 95 18 chr15 98644275 98644481 -2736040 - L1MD2 LINE L1 -4789 1751 1562 * 2139 139 0 7 chr15 98644481 98644783 -2735738 - AluSx SINE Alu -6 306 7 2362 209 95 18 chr15 98644783 98645440 -2735081 - L1MD2 LINE L1 -4978 1562 834 180 0 0 0 chr15 98645535 98645555 -2734966 + (CTG)n Simple_repeat Simple_repeat 1 20 0 576 226 44 96 chr15 98645710 98645980 -2734541 - L1MD2 LINE L1 -6215 325 70 278 278 0 14 chr15 98646008 98646080 -2734441 - MIR SINE MIR -107 155 85 751 258 86 5 chr15 98646598 98646796 -2733725 + MIR SINE MIR 5 218 -44 553 334 174 21 chr15 98646939 98647463 -2733058 - L3 LINE CR1 -1 1576 973 320 305 104 24 chr15 98647499 98647663 -2732858 + MER117 DNA MER1_type 3 179 -18 188 255 59 20 chr15 98647671 98647722 -2732799 - L3 LINE CR1 -680 897 845 300 236 282 0 chr15 98647799 98647909 -2732612 + MIR SINE MIR 50 190 -72 557 323 195 22 chr15 98647987 98648535 -2731986 - L3 LINE CR1 -857 720 78 877 188 0 66 chr15 98649434 98649578 -2730943 + FRAM SINE Alu 1 130 -182 2327 101 3 3 chr15 98649578 98649875 -2730646 - AluSp SINE Alu -16 297 1 877 188 0 66 chr15 98649875 98649911 -2730610 + FRAM SINE Alu 130 167 -9 273 176 27 54 chr15 98650573 98650647 -2729874 - MER5A DNA MER1_type -108 81 10 623 84 21 0 chr15 98653448 98653543 -2726978 + L1MA3 LINE L1 6209 6305 0 213 39 0 0 chr15 98657113 98657139 -2723382 + (A)n Simple_repeat Simple_repeat 1 26 0 353 314 76 0 chr15 98657440 98657558 -2722963 + MIR SINE MIR 122 248 -14 2638 66 3 0 chr15 98659335 98659685 -2720836 + L1PA7 LINE L1 5804 6154 0 257 230 81 11 chr15 98659705 98659792 -2720729 - MER112 DNA MER1_type -43 217 125 281 291 51 26 chr15 98660210 98660327 -2720194 + MIR3 SINE MIR 89 208 0 238 329 13 13 chr15 98661174 98661250 -2719271 - MIR3 SINE MIR -47 161 86 335 212 88 44 chr15 98661306 98661443 -2719078 - MER96 DNA MER1_type? -1 174 32 799 206 27 0 chr15 98662654 98662838 -2717683 - MER5A DNA MER1_type 0 189 1 2355 74 0 52 chr15 98663406 98663716 -2716805 + AluSg SINE Alu 1 294 -16 210 150 0 0 chr15 98664773 98664813 -2715708 + (GGATG)n Simple_repeat Simple_repeat 4 43 0 285 343 156 21 chr15 98666162 98666489 -2714032 + L2 LINE L2 2942 3312 -1 442 285 89 0 chr15 98667019 98667177 -2713344 - HAL1 LINE L1 -754 1753 1582 340 302 8 24 chr15 98667189 98667315 -2713206 - HAL1 LINE L1 -1579 928 805 2215 133 10 0 chr15 98668614 98668915 -2711606 - AluSx SINE Alu -8 304 1 595 213 31 12 chr15 98670557 98670717 -2709804 + MLT1A1 LTR MaLR 1 163 -202 2106 133 0 10 chr15 98670728 98671030 -2709491 - AluSx SINE Alu -13 299 1 939 200 0 0 chr15 98671042 98671202 -2709319 - AluJb SINE Alu -18 294 135 785 202 43 5 chr15 98671208 98671396 -2709125 + MLT1A1 LTR MaLR 170 364 -1 1653 199 19 30 chr15 98672554 98672921 -2707600 + MLT1A1 LTR MaLR 1 363 -2 2214 117 0 13 chr15 98673213 98673513 -2707008 - AluSg SINE Alu -14 296 1 200 307 79 10 chr15 98675117 98675218 -2705303 + L2 LINE L2 3152 3259 -13 352 274 24 0 chr15 98675218 98675302 -2705219 + L1MC4 LINE L1 6618 6703 -1339 318 269 93 62 chr15 98675239 98675315 -2705206 - L1MCa LINE L1 -4335 2091 2019 * 2345 87 0 0 chr15 98675315 98675602 -2704919 - AluY SINE Alu -23 288 2 318 269 93 62 chr15 98675602 98675718 -2704803 - L1MCa LINE L1 -4407 2019 1893 779 306 63 3 chr15 98678294 98678611 -2701910 + MER46C DNA MER2_type 2 337 -1 180 111 0 0 chr15 98679188 98679215 -2701306 + (T)n Simple_repeat Simple_repeat 1 27 0 234 0 0 0 chr15 98681172 98681198 -2699323 + (A)n Simple_repeat Simple_repeat 1 26 0 273 258 0 32 chr15 98682879 98682972 -2697549 - L1ME3A LINE L1 -6 6164 6075 1005 177 65 23 chr15 98683147 98683362 -2697159 - MER58A DNA MER1_type 0 224 1 2076 187 75 12 chr15 98683898 98684326 -2696195 + MLT1C LTR MaLR 9 463 -4 6543 203 91 6 chr15 98685139 98686717 -2693804 + L1M4c LINE L1 2 1713 -4671 453 113 0 0 chr15 98686819 98686881 -2693640 + MER8 DNA MER2_type 178 239 0 2053 139 3 7 chr15 98687924 98688219 -2692302 - AluSx SINE Alu -18 294 1 508 288 101 34 chr15 98688241 98688567 -2691954 + L1ME LINE L1 5293 5640 -524 946 239 110 26 chr15 98691119 98691454 -2689067 + MLT1C LTR MaLR 19 391 -76 384 228 63 111 chr15 98691454 98691525 -2688996 + MIR SINE MIR 51 124 -138 2248 132 0 0 chr15 98691525 98691835 -2688686 - AluSx SINE Alu -2 310 1 384 228 63 111 chr15 98691835 98691952 -2688569 + MIR SINE MIR 124 230 -32 228 263 161 15 chr15 98692026 98692163 -2688358 - L2 LINE L2 -855 2459 2303 2388 88 3 0 chr15 98693415 98693711 -2686810 + AluSp SINE Alu 1 297 -16 2186 109 3 0 chr15 98694040 98694334 -2686187 + AluSx SINE Alu 5 299 -13 185 243 108 14 chr15 98694335 98694409 -2686112 - L2 LINE L2 -6 3266 3186 563 180 55 23 chr15 98694501 98694629 -2685892 - MER5B DNA MER1_type 0 178 47 4029 61 2 6 chr15 98694793 98695335 -2685186 + L1PA7 LINE L1 5615 6154 0 604 248 138 35 chr15 98696657 98696968 -2683553 - MER113 DNA MER1_type? -106 415 73 184 276 115 11 chr15 98697639 98697726 -2682795 - L2 LINE L2 -181 3091 2996 597 252 136 12 chr15 98698076 98698318 -2682203 + LTR16C LTR ERVL 194 465 -26 1363 150 60 13 chr15 98898897 98899197 -2481324 - HSREP522 Satellite telomeric -188 316 3 473 173 51 15 chr15 98899218 98899630 -2480891 - TAR1 Satellite telomeric -465 427 1 237 156 0 0 chr15 98900058 98900103 -2480418 - SUBTEL_sa Satellite Satellite -129 45 1 639 192 16 0 chr15 98900169 98900294 -2480227 - MER20 DNA MER1_type -70 149 23 257 250 0 42 chr15 98900647 98900719 -2479802 - MIR SINE MIR -76 186 118 238 169 34 0 chr15 98901627 98901686 -2478835 + (TA)n Simple_repeat Simple_repeat 1 61 0 685 175 54 0 chr15 98901917 98902083 -2478438 + L1MA4 LINE L1 5151 5325 -821 646 200 0 62 chr15 98902083 98902110 -2478411 + FRAM SINE Alu 33 60 -252 2196 77 17 10 chr15 98902110 98902408 -2478113 - AluY SINE Alu -11 300 1 646 200 0 62 chr15 98902408 98902510 -2478011 + FRAM SINE Alu 60 154 -22 3664 167 4 38 chr15 98902511 98903270 -2477251 + L1MA4 LINE L1 5290 6022 -278 1420 262 80 51 chr15 98903415 98904019 -2476502 - MLT1E2 LTR MaLR 0 626 6 293 307 25 80 chr15 98904236 98904399 -2476122 - L2 LINE L2 -1 3312 3159 493 205 8 26 chr15 98907230 98907347 -2473174 - MER103 DNA DNA -42 124 10 782 131 7 0 chr15 98907514 98907667 -2472854 + HSREP522 Satellite telomeric 351 504 0 4537 221 61 11 chr15 98907667 98908966 -2471555 - L1 LINE L1 -1998 4148 2785 711 270 103 33 chr15 98909100 98909453 -2471068 + HSREP522 Satellite telomeric 1 377 -24 320 212 15 0 chr15 98911054 98911120 -2469401 - MIR3 SINE MIR -47 161 95 1225 184 134 0 chr15 98911594 98911855 -2468666 + AluJo SINE Alu 1 296 -6 1229 123 0 26 chr15 98911974 98912169 -2468352 + MER30B DNA MER1_type 1 190 0 649 175 9 0 chr15 98912529 98912643 -2467878 + FLAM_C SINE Alu 1 115 -18 26 0 0 0 chr15 98912645 98912671 -2467850 + AT_rich Low_complexity Low_complexity 1 26 0 613 46 120 24 chr15 98913529 98913908 -2466613 + (AAATG)n Simple_repeat Simple_repeat 1 415 0 216 58 115 0 chr15 98913921 98913973 -2466548 + (AAATG)n Simple_repeat Simple_repeat 5 62 0 713 71 105 33 chr15 98913987 98914834 -2465687 + (AAATG)n Simple_repeat Simple_repeat 1 907 0 3336 162 54 40 chr15 98917080 98917928 -2462593 + MER4D LTR ERV1 2 465 0 180 0 0 0 chr15 98918000 98918020 -2462501 + (GA)n Simple_repeat Simple_repeat 1 20 0 651 272 123 42 chr15 98918125 98918530 -2461991 + MLT1D LTR MaLR 68 505 0 267 304 51 51 chr15 98918890 98919028 -2461493 - MIR3 SINE MIR -62 146 9 2845 24 0 3 chr15 98919319 98919674 -2460847 + L1PA5 LINE L1 5805 6158 0 1244 250 104 13 chr15 98919979 98920431 -2460090 - MLT1D LTR MaLR 0 505 13 470 299 116 10 chr15 98920843 98921154 -2459367 - LTR16C LTR ERVL -38 453 110 990 328 134 9 chr15 98921827 98922712 -2457809 - HAL1 LINE L1 -1379 1128 133 2030 146 0 28 chr15 98923441 98923762 -2456759 + AluSx SINE Alu 1 312 0 1915 126 51 43 chr15 98925241 98925613 -2454908 + THE1C LTR MaLR 1 375 0 2125 100 3 3 chr15 98926795 98927094 -2453427 - AluY SINE Alu -12 299 1 1884 160 0 10 chr15 98927355 98927655 -2452866 + AluSx SINE Alu 1 297 -15 502 216 56 74 chr15 98928228 98928459 -2452062 - L1MC5 LINE L1 -763 7198 6972 21 82 0 0 chr15 98928472 98928521 -2452000 + AT_rich Low_complexity Low_complexity 1 49 0 225 121 71 61 chr15 98928735 98928834 -2451687 + (AAATG)n Simple_repeat Simple_repeat 3 102 0 1438 136 120 3 chr15 98928989 98929290 -2451231 + Tigger2 DNA MER2_type 2373 2708 -10 21 36 0 0 chr15 98929524 98929552 -2450969 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr15 98930213 98930248 -2450273 + AT_rich Low_complexity Low_complexity 1 35 0 270 0 0 0 chr15 98931117 98931147 -2449374 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chr15 98931428 98931449 -2449072 + AT_rich Low_complexity Low_complexity 1 21 0 2119 131 0 3 chr15 98931526 98931838 -2448683 - AluSx SINE Alu -1 311 1 195 139 0 0 chr15 98931867 98931903 -2448618 + (TC)n Simple_repeat Simple_repeat 1 36 0 453 333 103 26 chr15 98932095 98932473 -2448048 - L1MEd LINE L1 -3303 2826 2420 319 309 79 73 chr15 98932511 98932841 -2447680 - L1MEd LINE L1 -3682 2447 2116 180 0 0 0 chr15 98932879 98932899 -2447622 + (TA)n Simple_repeat Simple_repeat 1 20 0 2208 100 0 13 chr15 98933025 98933326 -2447195 + AluSg SINE Alu 1 297 -13 246 313 39 25 chr15 98933789 98934044 -2446477 - L1MEd LINE L1 -4867 1252 1055 22 35 0 0 chr15 98934188 98934217 -2446304 + AT_rich Low_complexity Low_complexity 1 29 0 300 294 54 0 chr15 98934422 98934514 -2446007 - L1MEd LINE L1 -5493 626 530 25 31 0 0 chr15 98937945 98937977 -2442544 + AT_rich Low_complexity Low_complexity 1 32 0 1576 201 36 0 chr15 98938033 98938367 -2442154 + MER7A DNA MER2_type 3 346 0 481 272 100 28 chr15 98938999 98939273 -2441248 - MER77 LTR ERV1 -4 601 323 27 49 0 0 chr15 98939391 98939432 -2441089 + AT_rich Low_complexity Low_complexity 1 41 0 3778 262 71 16 chr15 98939441 98941227 -2439294 + L1MB8 LINE L1 3565 5445 -729 648 210 23 11 chr15 98941243 98941419 -2439102 + L1MB8 LINE L1 5562 5739 -435 1395 219 36 16 chr15 98941605 98941993 -2438528 + L1MB8 LINE L1 5783 6178 0 458 355 78 13 chr15 98942054 98942339 -2438182 - L2 LINE L2 -266 3047 2748 182 296 57 105 chr15 98942360 98942607 -2437914 + L3 LINE CR1 760 994 -583 1161 169 5 5 chr15 98943949 98944168 -2436353 + L1MB3 LINE L1 5964 6182 -1 609 317 84 59 chr15 98944277 98944990 -2435531 + L1MEc LINE L1 546 1276 -5120 788 132 31 0 chr15 98945062 98945191 -2435330 - MSTB1 LTR MaLR -299 133 1 2674 106 22 44 chr15 98948196 98948650 -2431871 + MLT2A1 LTR ERVL 1 444 0 1833 114 0 0 chr15 98948650 98948913 -2431608 + HERVL-A1 LTR ERVL 1 263 -5391 * 3534 108 2 2 chr15 98948902 98949400 -2431121 + HERVL-A1 LTR ERVL 1317 1814 -3840 * 14068 113 15 2 chr15 98949393 98951825 -2428696 + HERVL-A1 LTR ERVL 3162 5654 0 2776 96 8 3 chr15 98951825 98952209 -2428312 + MLT2A1 LTR ERVL 1 386 -58 295 164 0 0 chr15 98952209 98952264 -2428257 - MLT2A1 LTR ERVL 0 453 399 222 171 0 0 chr15 98952267 98952308 -2428213 + (CA)n Simple_repeat Simple_repeat 2 42 0 2296 97 114 6 chr15 98952311 98952672 -2427849 - MLT2A1 LTR ERVL -40 404 5 385 88 0 59 chr15 98952675 98952743 -2427778 + MLT2A1 LTR ERVL 381 444 0 652 243 15 0 chr15 98953016 98953152 -2427369 + FRAM SINE Alu 6 143 -33 316 221 12 12 chr15 98953179 98953265 -2427256 + LTR49 LTR ERV1 500 585 -10 2116 116 3 16 chr15 98953269 98953579 -2426942 + AluSp SINE Alu 8 313 0 25 0 0 0 chr15 98953715 98953740 -2426781 + AT_rich Low_complexity Low_complexity 1 25 0 571 359 134 21 chr15 98954268 98954989 -2425532 + L2 LINE L2 2049 2851 -463 308 331 57 19 chr15 98955064 98955221 -2425300 + L2 LINE L2 2924 3086 -186 263 200 0 0 chr15 98955337 98955392 -2425129 + Alu SINE Alu 234 288 -12 180 326 146 11 chr15 98955393 98955482 -2425039 - MER5B DNA MER1_type -54 124 24 254 250 191 24 chr15 98955515 98955599 -2424922 + MER5A DNA MER1_type 9 106 -83 26 0 0 0 chr15 98955599 98955625 -2424896 + AT_rich Low_complexity Low_complexity 1 26 0 816 207 4 58 chr15 98955719 98955994 -2424527 - AluSx SINE Alu -11 301 42 1344 165 0 0 chr15 98956287 98956487 -2424034 - AluSx SINE Alu -112 200 1 4357 123 61 8 chr15 98956612 98957355 -2423166 - L1MA5A LINE L1 -4 6293 5512 522 158 97 26 chr15 98957355 98957469 -2423052 + AluSg/x SINE Alu 168 289 -23 6252 158 27 5 chr15 98957471 98958835 -2421686 - L1MA5A LINE L1 -743 5403 4126 1657 178 0 14 chr15 98959078 98959370 -2421151 + AluJb SINE Alu 1 288 -24 1646 74 0 5 chr15 98959449 98959666 -2420855 + L1PA7 LINE L1 5931 6146 -8 22 35 0 0 chr15 98959927 98959956 -2420565 + AT_rich Low_complexity Low_complexity 1 29 0 506 260 44 17 chr15 98960095 98960276 -2420245 + L1M4 LINE L1 4834 5019 -1127 660 220 50 31 chr15 98960284 98960443 -2420078 + AluJo SINE Alu 126 287 -25 937 244 22 35 chr15 98960458 98960769 -2419752 + L1M4 LINE L1 5022 5328 -818 272 169 51 0 chr15 98960765 98960824 -2419697 + L1MD2 LINE L1 6275 6336 -23 * 21 0 0 0 chr15 98960915 98960936 -2419585 + AT_rich Low_complexity Low_complexity 1 21 0 234 295 48 38 chr15 98962408 98962618 -2417903 + HAL1b LINE L1 693 904 -444 236 297 33 0 chr15 98962948 98963039 -2417482 + L1M4 LINE L1 2144 2237 -3909 234 0 0 0 chr15 98964111 98964137 -2416384 + (TA)n Simple_repeat Simple_repeat 1 26 0 220 254 9 45 chr15 98965892 98966002 -2414519 + (CATATA)n Simple_repeat Simple_repeat 5 110 0 1479 179 83 64 chr15 98966036 98966422 -2414099 - LTR49 LTR ERV1 -168 427 31 2027 114 7 4 chr15 98966422 98966695 -2413826 + AluSq SINE Alu 18 291 -22 1479 179 83 64 chr15 98966695 98966727 -2413794 - LTR49 LTR ERV1 -564 31 1 25 31 0 0 chr15 98967420 98967452 -2413069 + AT_rich Low_complexity Low_complexity 1 32 0 571 233 138 11 chr15 98967704 98967893 -2412628 + MER20 DNA MER1_type 4 216 -3 1682 173 61 23 chr15 98968033 98968462 -2412059 - LTR56 LTR ERV1 0 445 1 2306 180 97 13 chr15 98968650 98969194 -2411327 - LTR49 LTR ERV1 -5 590 1 21 0 0 0 chr15 98969332 98969353 -2411168 + AT_rich Low_complexity Low_complexity 1 21 0 22 20 5 0 chr15 98969760 98969817 -2410704 + AT_rich Low_complexity Low_complexity 1 29 0 345 271 24 18 chr15 98969968 98970134 -2410387 + (TA)n Simple_repeat Simple_repeat 1 167 0 26 0 0 0 chr15 98970231 98970257 -2410264 + AT_rich Low_complexity Low_complexity 1 26 0 1387 248 46 10 chr15 98971060 98971476 -2409045 - MER54A LTR ERVL 0 901 471 2057 136 74 15 chr15 98971512 98971850 -2408671 - THE1B LTR MaLR 0 364 7 1568 206 61 13 chr15 98971859 98972252 -2408269 - MER54A LTR ERVL -489 412 1 1457 222 0 4 chr15 98973452 98973731 -2406790 - AluJb SINE Alu -24 288 11 1158 264 43 75 chr15 98974730 98974963 -2405558 - MLT1D LTR MaLR -9 496 257 1978 105 7 18 chr15 98974963 98975249 -2405272 - AluSg SINE Alu -16 294 12 1158 264 43 75 chr15 98975249 98975523 -2404998 - MLT1D LTR MaLR -248 257 5 22 0 0 0 chr15 98975581 98975603 -2404918 + AT_rich Low_complexity Low_complexity 1 22 0 553 201 27 0 chr15 98975617 98975766 -2404755 + GA-rich Low_complexity Low_complexity 4 156 0 22 35 0 0 chr15 98975920 98975949 -2404572 + AT_rich Low_complexity Low_complexity 1 29 0 791 252 50 21 chr15 98976301 98976678 -2403843 - L1MCa LINE L1 -3509 2917 2530 408 293 86 29 chr15 98976718 98976892 -2403629 - L1MCa LINE L1 -4990 1436 1253 1385 228 7 10 chr15 98977126 98977420 -2403101 - MLT1A1 LTR MaLR 0 365 73 1159 239 163 38 chr15 98978253 98978700 -2401821 - L1MB5 LINE L1 -10 6164 5662 416 306 25 20 chr15 98978701 98978897 -2401624 + L1M4c LINE L1 1518 1714 -4670 26 30 0 0 chr15 98978897 98978930 -2401591 + AT_rich Low_complexity Low_complexity 1 33 0 2244 88 0 0 chr15 98979080 98979363 -2401158 + AluY SINE Alu 1 283 -28 541 262 103 12 chr15 98979795 98980081 -2400440 + L1M4c LINE L1 2336 2600 -3782 1850 208 106 9 chr15 98980172 98980595 -2399926 + MLT1C LTR MaLR 4 467 0 386 133 0 0 chr15 98980666 98980726 -2399795 + MLT1C LTR MaLR 408 467 0 305 269 115 26 chr15 98980813 98980969 -2399552 + L1M4 LINE L1 42 211 -6331 340 317 16 6 chr15 98981269 98981422 -2399099 + L1M4 LINE L1 553 929 -5717 1453 237 106 59 chr15 98981827 98982523 -2397998 + L1M4 LINE L1 820 1548 -4994 256 266 0 29 chr15 98982547 98982686 -2397835 + CT-rich Low_complexity Low_complexity 1 135 0 24 32 0 0 chr15 98982976 98983007 -2397514 + AT_rich Low_complexity Low_complexity 1 31 0 477 334 84 32 chr15 98983441 98983788 -2396733 - L2 LINE L2 -499 2815 2451 270 274 20 20 chr15 98984645 98984747 -2395774 + HERVL LTR ERVL 506 607 -5047 474 325 42 11 chr15 98985101 98985292 -2395229 + HERVL LTR ERVL 2267 2463 -3191 560 176 8 30 chr15 98986551 98986682 -2393839 - L1M4 LINE L1 -838 5308 5181 2109 85 51 3 chr15 98986682 98986977 -2393544 - AluY SINE Alu -2 309 1 227 219 12 12 chr15 98987004 98987086 -2393435 + T-rich Low_complexity Low_complexity 1 82 0 732 241 69 16 chr15 98987203 98987506 -2393015 - LTR48 LTR ERV1 -1 786 409 22 56 0 0 chr15 98987534 98987570 -2392951 + AT_rich Low_complexity Low_complexity 1 36 0 1421 216 3 29 chr15 98987609 98987924 -2392597 - AluJb SINE Alu -5 307 1 607 256 0 8 chr15 98988035 98988156 -2392365 - FLAM_A SINE Alu -13 120 1 22 56 0 0 chr15 98988198 98988234 -2392287 + AT_rich Low_complexity Low_complexity 1 36 0 429 54 0 0 chr15 98988326 98988382 -2392139 + (CA)n Simple_repeat Simple_repeat 1 56 0 378 234 40 8 chr15 98988762 98988886 -2391635 - MER115 DNA AcHobo -8 685 558 374 145 0 79 chr15 98988935 98989011 -2391510 - MER115 DNA AcHobo -115 578 509 672 178 185 0 chr15 98989798 98989944 -2390577 - MSTA LTR MaLR 0 428 256 225 0 0 0 chr15 98989944 98989969 -2390552 + (A)n Simple_repeat Simple_repeat 1 25 0 207 272 74 12 chr15 98990652 98990733 -2389788 + L2 LINE L2 3186 3271 -1 386 167 274 0 chr15 98990826 98990928 -2389593 - MSTA LTR MaLR -24 404 275 251 215 89 25 chr15 98991017 98991096 -2389425 - MLT1L LTR MaLR -417 198 115 478 107 12 12 chr15 98991154 98991238 -2389283 + (TTCC)n Simple_repeat Simple_repeat 2 85 0 1560 179 43 23 chr15 98991246 98991548 -2388973 - AluJb SINE Alu -4 308 1 180 82 41 20 chr15 98992421 98992470 -2388051 + (TA)n Simple_repeat Simple_repeat 1 50 0 324 256 0 22 chr15 98992476 98992566 -2387955 - L1MC4 LINE L1 -1337 6705 6618 2074 139 7 0 chr15 98992755 98993057 -2387464 + AluSq SINE Alu 1 304 -9 1003 282 46 5 chr15 98993316 98993752 -2386769 + L1ME4a LINE L1 5256 5709 -461 280 83 0 21 chr15 98993753 98993801 -2386720 + FRAM/FAM SINE Alu 42 88 -78 311 188 0 99 chr15 98993805 98993906 -2386615 - AluJo SINE Alu -129 173 83 444 111 0 0 chr15 98994006 98994069 -2386452 - AluJ/FLAM SINE Alu -249 63 1 228 213 0 0 chr15 98995188 98995249 -2385272 + T-rich Low_complexity Low_complexity 1 61 0 298 203 14 40 chr15 98995909 98995983 -2384538 - L2 LINE L2 -1 3312 3241 402 254 105 19 chr15 98996036 98996245 -2384276 + L1ME4a LINE L1 5690 5916 -205 459 52 0 0 chr15 98996246 98996304 -2384217 + (CATA)n Simple_repeat Simple_repeat 3 60 0 39102 47 31 1 chr15 98996343 99002317 -2378204 + L1HS LINE L1 1 6155 0 1248 156 0 5 chr15 99002730 99002941 -2377580 + MER2 DNA MER2_type 1 210 -135 2268 113 0 3 chr15 99004471 99004771 -2375750 + AluSq SINE Alu 1 299 -14 755 263 16 20 chr15 99005704 99006027 -2374494 - MER34C LTR ERV1 -158 427 63 6156 39 1 3 chr15 99006769 99007517 -2373004 + L1PA5 LINE L1 5408 6154 0 206 299 69 0 chr15 99008279 99008366 -2372155 - L2 LINE L2 -5 3308 3216 24 77 0 0 chr15 99009863 99009915 -2370606 + AT_rich Low_complexity Low_complexity 1 52 0 1761 171 10 27 chr15 99010383 99010682 -2369839 - AluSp SINE Alu -19 294 1 2002 157 0 0 chr15 99011054 99011348 -2369173 + AluSx SINE Alu 1 294 -18 3305 181 3 14 chr15 99011900 99012558 -2367963 - L1MA5 LINE L1 -7 6293 5643 2472 215 32 24 chr15 99012561 99013269 -2367252 + L1 LINE L1 3884 4597 -1549 30 27 0 0 chr15 99013907 99013944 -2366577 + AT_rich Low_complexity Low_complexity 1 37 0 489 115 92 0 chr15 99013992 99014122 -2366399 + (CATCT)n Simple_repeat Simple_repeat 5 146 0 753 93 70 15 chr15 99014287 99014686 -2365835 + (CATTT)n Simple_repeat Simple_repeat 1 421 0 565 110 82 12 chr15 99014708 99014953 -2365568 + (CATTT)n Simple_repeat Simple_repeat 1 262 0 639 102 57 40 chr15 99014953 99015129 -2365392 + (CATCT)n Simple_repeat Simple_repeat 1 179 0 361 123 49 0 chr15 99015140 99015221 -2365300 + (CATCT)n Simple_repeat Simple_repeat 5 89 0 659 91 65 26 chr15 99015263 99015417 -2365104 + (CATCT)n Simple_repeat Simple_repeat 5 164 0 637 146 47 6 chr15 99015435 99015606 -2364915 + (CATCT)n Simple_repeat Simple_repeat 2 179 0 570 109 73 24 chr15 99015620 99015785 -2364736 + (CATTT)n Simple_repeat Simple_repeat 2 174 0 726 88 55 41 chr15 99015801 99016238 -2364283 + (CATTT)n Simple_repeat Simple_repeat 1 443 0 367 154 21 69 chr15 99016288 99016476 -2364045 + (CATCT)n Simple_repeat Simple_repeat 1 179 0 1532 196 50 13 chr15 99016575 99016931 -2363590 - AluJo SINE Alu 0 367 1 198 0 0 0 chr15 99016931 99016953 -2363568 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 749 174 26 0 chr15 99016954 99017069 -2363452 - FLAM_C SINE Alu -15 118 1 259 313 47 0 chr15 99017498 99017626 -2362895 + (CTAGGG)n Simple_repeat Simple_repeat 3 136 0 270 124 0 85 chr15 99017640 99017793 -2362728 + (CAGGG)n Simple_repeat Simple_repeat 1 140 0 278 233 17 78 chr15 99017828 99018008 -2362513 + (CAAGG)n Simple_repeat Simple_repeat 3 171 0 * 386 204 0 85 chr15 99017920 99018096 -2362425 + (CAGGG)n Simple_repeat Simple_repeat 1 161 0 233 139 0 86 chr15 99018147 99018298 -2362223 + (CAGGG)n Simple_repeat Simple_repeat 1 138 0 228 234 0 56 chr15 99018429 99018536 -2361985 + (CAGAG)n Simple_repeat Simple_repeat 1 101 0 * 458 204 0 63 chr15 99018484 99018675 -2361846 + (CAGGG)n Simple_repeat Simple_repeat 1 179 0 213 136 0 76 chr15 99018696 99018762 -2361759 + (CCCTG)n Simple_repeat Simple_repeat 1 61 0 803 126 0 17 chr15 99018816 99018935 -2361586 - AluSq/x SINE Alu -180 133 17 403 213 32 11 chr15 99018937 99019031 -2361490 + MIR SINE MIR 92 187 -75 385 280 54 0 chr15 99019235 99019403 -2361118 + (CCCTAG)n Simple_repeat Simple_repeat 1 177 0 323 317 124 84 chr15 99019474 99020367 -2360154 - L1M2 LINE L1 -5476 1373 445 239 294 50 6 chr15 99020417 99020577 -2359944 + (CTAGGG)n Simple_repeat Simple_repeat 6 172 0 * 275 228 6 64 chr15 99020557 99020728 -2359793 + (CAGGG)n Simple_repeat Simple_repeat 3 163 0 206 42 0 0 chr15 99020785 99020809 -2359712 + (CAGGC)n Simple_repeat Simple_repeat 1 24 0 382 161 0 96 chr15 99021044 99021243 -2359278 + (CAGGG)n Simple_repeat Simple_repeat 1 180 0 351 236 56 19 chr15 99021268 99021429 -2359092 + (CTAGGG)n Simple_repeat Simple_repeat 6 172 0 * 409 168 0 114 chr15 99021314 99021554 -2358967 + (CAGGG)n Simple_repeat Simple_repeat 1 212 0 324 212 0 66 chr15 99021698 99021849 -2358672 + (CAGGG)n Simple_repeat Simple_repeat 1 141 0 353 269 62 0 chr15 99021889 99022049 -2358472 + (CTAGGG)n Simple_repeat Simple_repeat 1 170 0 288 192 0 93 chr15 99022007 99022200 -2358321 + (CAGGG)n Simple_repeat Simple_repeat 2 176 0 * 180 163 41 0 chr15 99022280 99022329 -2358192 + (CTAGGG)n Simple_repeat Simple_repeat 2 52 0 353 209 5 70 chr15 99022337 99022572 -2357949 + (CAGGG)n Simple_repeat Simple_repeat 1 219 0 291 309 93 25 chr15 99022768 99022930 -2357591 + L1MB1 LINE L1 910 1082 -5571 362 298 25 8 chr15 99023292 99023413 -2357108 + L1MB1 LINE L1 988 1110 -5543 588 324 8 4 chr15 99023593 99023831 -2356690 + L1MB1 LINE L1 1453 1691 -4962 7910 192 40 61 chr15 99023845 99025916 -2354605 + L1MB1 LINE L1 3293 5275 -1479 1763 133 7 7 chr15 99025916 99026187 -2354334 + AluSx SINE Alu 40 310 -2 7910 192 40 61 chr15 99026187 99027265 -2353256 + L1MB1 LINE L1 5275 6373 -381 225 211 56 0 chr15 99027233 99027304 -2353217 + L1MC4 LINE L1 7215 7289 -1339 * 243 135 0 67 chr15 99027306 99027395 -2353126 + (TA)n Simple_repeat Simple_repeat 1 83 0 1495 202 21 26 chr15 99027404 99027786 -2352735 + L1MB1 LINE L1 6362 6741 -13 1075 321 72 22 chr15 99027794 99028403 -2352118 - L2 LINE L2 -90 3223 2574 1107 245 36 15 chr15 99029938 99030269 -2350252 + MLT1A1 LTR MaLR 26 363 -2 441 118 0 26 chr15 99030826 99030902 -2349619 - AluJo SINE Alu -4 308 235 281 186 43 14 chr15 99030902 99030972 -2349549 - MER52A LTR ERV1 0 1755 1684 * 3319 198 113 81 chr15 99030964 99032100 -2348421 - MER52A LTR ERV1 -559 1196 25 1169 231 4 16 chr15 99032105 99032348 -2348173 - AluJo SINE Alu -72 240 1 1378 196 52 60 chr15 99033396 99033481 -2347040 + MLT1A1 LTR MaLR 1 85 -280 2272 106 0 0 chr15 99033481 99033794 -2346727 + AluSg SINE Alu 1 313 0 1378 196 52 60 chr15 99033794 99034075 -2346446 + MLT1A1 LTR MaLR 85 365 0 498 288 88 40 chr15 99037644 99038091 -2342430 + LTR33 LTR ERVL 9 507 -14 225 333 11 33 chr15 99038478 99038568 -2341953 - L2 LINE L2 -10 3262 3175 586 302 30 30 chr15 99038639 99038871 -2341650 - MIR SINE MIR 0 262 31 2649 158 15 7 chr15 99039098 99039561 -2340960 + L1PA16 LINE L1 5683 6149 -17 31 0 0 0 chr15 99039564 99039595 -2340926 + AT_rich Low_complexity Low_complexity 1 31 0 545 41 0 14 chr15 99041179 99041252 -2339269 + (TCTA)n Simple_repeat Simple_repeat 4 75 0 23 33 0 0 chr15 99041421 99041451 -2339070 + AT_rich Low_complexity Low_complexity 1 30 0 17991 41 1 4 chr15 99042441 99044678 -2335843 - L1P LINE L1 -3386 2760 529 245 278 56 22 chr15 99045816 99045906 -2334615 - L3 LINE CR1 -189 1388 1296 2193 100 0 22 chr15 99047633 99047944 -2332577 - AluSx SINE Alu -8 304 1 786 133 7 14 chr15 99048872 99049015 -2331506 - L1PA13 LINE L1 0 6163 6022 402 360 48 34 chr15 99050081 99050434 -2330087 + L2 LINE L2 2312 2669 -645 2850 239 50 4 chr15 99050530 99051246 -2329275 + L1MD2 LINE L1 5390 6138 -221 298 244 256 0 chr15 99051266 99051422 -2329099 + L1MD3 LINE L1 7786 7981 -14 22 0 0 0 chr15 99051962 99051984 -2328537 + AT_rich Low_complexity Low_complexity 1 22 0 455 327 154 28 chr15 99052680 99052980 -2327541 + L2 LINE L2 2737 3070 -243 712 258 56 15 chr15 99052991 99053189 -2327332 - MER63A DNA MER1_type -1 209 4 339 324 144 0 chr15 99053287 99053398 -2327123 + L2 LINE L2 3187 3313 0 300 235 162 22 chr15 99055407 99055633 -2324888 - Charlie7 DNA MER1_type 0 2612 3 207 219 0 0 chr15 99056063 99056104 -2324417 + (TTA)n Simple_repeat Simple_repeat 3 43 0 937 269 14 0 chr15 99056156 99056375 -2324146 - MER58A DNA MER1_type 0 224 3 1558 207 23 26 chr15 99056454 99056802 -2323719 + MER7A DNA MER2_type 1 345 -1 1257 187 107 33 chr15 99056945 99057282 -2323239 + MLT1A1 LTR MaLR 4 365 0 51 51 0 0 chr15 99057860 99057939 -2322582 + AT_rich Low_complexity Low_complexity 1 79 0 523 344 32 16 chr15 99058520 99058773 -2321748 + MLT1H1 LTR MaLR 1 257 -298 22 80 0 0 chr15 99059136 99059186 -2321335 + AT_rich Low_complexity Low_complexity 1 50 0 354 219 109 8 chr15 99060199 99060327 -2320194 + MER103 DNA DNA 11 151 -15 428 341 18 66 chr15 99060946 99061172 -2319349 - MIR SINE MIR -30 232 18 1131 275 37 21 chr15 99061655 99062095 -2318426 - L2 LINE L2 -5 3308 2814 718 278 43 0 chr15 99062120 99062307 -2318214 - MER58A DNA MER1_type 0 224 30 217 267 0 0 chr15 99062320 99062365 -2318156 - L2 LINE L2 -514 2800 2756 716 290 119 58 chr15 99062373 99062887 -2317634 + MLT1H1 LTR MaLR 4 548 -19 1571 305 116 14 chr15 99062900 99063589 -2316932 - L2 LINE L2 -553 2761 2003 2090 152 28 14 chr15 99063857 99064219 -2316302 + THE1C LTR MaLR 9 375 0 21 0 0 0 chr15 99064823 99064844 -2315677 + AT_rich Low_complexity Low_complexity 1 21 0 533 210 55 0 chr15 99065412 99065593 -2314928 - L1MCa LINE L1 -2889 3537 3347 6403 160 12 11 chr15 99065600 99065961 -2314560 - L1PB1 LINE L1 0 6151 5792 376 77 31 0 chr15 99065961 99066026 -2314495 + (TA)n Simple_repeat Simple_repeat 2 68 0 6403 160 12 11 chr15 99066026 99067841 -2312680 - L1PB1 LINE L1 -359 5792 3974 704 200 32 16 chr15 99067816 99068006 -2312515 - L1MCa LINE L1 -3092 3334 3142 * 2272 202 48 24 chr15 99068020 99068883 -2311638 - L1MCa LINE L1 -3495 2931 2024 414 156 90 8 chr15 99068944 99069066 -2311455 - L1MCa LINE L1 -4362 2064 1933 322 379 94 10 chr15 99069067 99069270 -2311251 + L3 LINE CR1 1293 1512 -65 247 226 95 0 chr15 99071260 99071344 -2309177 + L1ME4a LINE L1 5844 5935 -186 26 50 0 0 chr15 99071411 99071451 -2309070 + AT_rich Low_complexity Low_complexity 1 40 0 240 111 0 0 chr15 99071886 99071922 -2308599 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 186 43 0 0 chr15 99073160 99073183 -2307338 + (TTA)n Simple_repeat Simple_repeat 2 24 0 22117 47 5 1 chr15 99073183 99076721 -2303800 - L1PA5 LINE L1 -19 6135 2572 190 314 197 22 chr15 99076764 99076901 -2303620 - MIR SINE MIR -101 161 1 184 369 65 42 chr15 99076919 99077087 -2303434 + L2 LINE L2 2687 2858 -456 21 36 0 0 chr15 99077385 99077413 -2303108 + AT_rich Low_complexity Low_complexity 1 28 0 422 309 88 8 chr15 99079576 99079825 -2300696 - L1ME LINE L1 -328 5793 5525 1890 145 93 0 chr15 99080126 99080458 -2300063 - THE1C LTR MaLR -12 363 1 231 69 0 0 chr15 99080946 99080975 -2299546 + LTR6A LTR ERV1 73 101 -463 982 190 3 12 chr15 99281356 99282732 -2097789 - ALR/Alpha Satellite centromeric 0 1362 1 1003 174 7 2 chr15 99283095 99285081 -2095440 - ALR/Alpha Satellite centromeric 0 1995 1 1167 159 4 1 chr15 99285092 99292998 -2087523 - ALR/Alpha Satellite centromeric 0 7930 1 2210 44 4 0 chr15 99292998 99293273 -2087248 + L1PA3 LINE L1 5721 5996 -159 1102 181 5 6 chr15 99293598 99294960 -2085561 + ALR/Alpha Satellite centromeric 1 1360 0 7409 28 0 0 chr15 99294971 99296395 -2084126 - L1PA2 LINE L1 -16 6139 4716 4876 34 2 0 chr15 99296395 99296974 -2083547 + L1P LINE L1 4073 4655 -1491 1206 163 6 3 chr15 99296974 99300220 -2080301 + ALR/Alpha Satellite centromeric 1 3234 -4215 3419 36 5 0 chr15 99300220 99300638 -2079883 - L1PA3 LINE L1 -4 6151 5732 1206 163 6 3 chr15 99300638 99304385 -2076136 + ALR/Alpha Satellite centromeric 3234 7436 -13 1193 170 3 3 chr15 99304398 99305313 -2075208 + ALR/Alpha Satellite centromeric 1 914 -5135 6815 54 1 0 chr15 99305313 99306227 -2074294 + L1PA3 LINE L1 5293 6207 0 1193 170 3 3 chr15 99306227 99310393 -2070128 + ALR/Alpha Satellite centromeric 914 5998 -51 1033 178 14 3 chr15 99310496 99312044 -2068477 + ALR/Alpha Satellite centromeric 1 1564 -77 1366 70 5 15 chr15 99312183 99312382 -2068139 + L1PA3 LINE L1 5959 6155 0 1076 163 2 0 chr15 99312382 99314463 -2066058 - ALR/Alpha Satellite centromeric 0 2084 1 1161 165 3 2 chr15 99314607 99322708 -2057813 - ALR/Alpha Satellite centromeric 0 8107 1 1152 177 5 2 chr15 99323090 99338424 -2042097 - ALR/Alpha Satellite centromeric 0 15373 1 17839 98 9 4 chr15 99338532 99341050 -2039471 - L1P LINE L1 -3615 2531 2 1172 166 4 2 chr15 99341063 99347391 -2033130 - ALR/Alpha Satellite centromeric -8 6342 1 22525 47 1 0 chr15 99347406 99351000 -2029521 - L1PA3 LINE L1 -3 6152 2555 1152 177 3 2 chr15 99351108 99353289 -2027232 - ALR/Alpha Satellite centromeric 0 2182 1 1112 182 2 3 chr15 99353302 99356434 -2024087 - ALR/Alpha Satellite centromeric 0 3130 1 1843 68 4 0 chr15 99556434 99556669 -1823852 + AluY SINE Alu 75 310 -1 641 249 108 0 chr15 99556675 99556972 -1823549 + L1M4 LINE L1 2110 2438 -3708 972 265 112 41 chr15 99557054 99557987 -1822534 + L1M4 LINE L1 2671 3669 -2477 3041 146 50 10 chr15 99558025 99558642 -1821879 - L1MB1 LINE L1 -189 5979 5338 503 264 39 22 chr15 99558656 99558838 -1821683 + L1M4 LINE L1 3951 4135 -2011 227 143 24 24 chr15 99559840 99559882 -1820639 + MER5B DNA MER1_type 1 42 -136 2144 107 4 0 chr15 99561069 99561379 -1819142 + AluSc SINE Alu 1 311 0 595 310 86 4 chr15 99562142 99562410 -1818111 + LTR16A LTR ERVL 139 428 -22 600 168 27 13 chr15 99563714 99563863 -1816658 - MER65A LTR ERV1 0 445 295 1433 186 35 0 chr15 99563887 99564172 -1816349 - MER65A LTR ERV1 -111 334 40 235 116 23 0 chr15 99564473 99564516 -1816005 - MADE1 DNA Mariner -3 77 34 897 122 7 0 chr15 99564930 99565078 -1815443 + L1PB1 LINE L1 6000 6148 -3 753 318 62 3 chr15 99565366 99565674 -1814847 + LTR40a LTR ERVL 2 327 -192 2748 233 20 13 chr15 99565685 99566470 -1814051 - L1 LINE L1 -1296 4850 4060 1793 73 0 2 chr15 99566475 99566759 -1813762 + LTR14A LTR ERVK 1 344 0 610 109 20 0 chr15 99566759 99566860 -1813661 + HERVK14 LTR ERVK 1 103 -5842 * 11912 96 4 1 chr15 99566854 99568535 -1811986 + HERVK14 LTR ERVK 205 1890 -4055 3083 81 148 5 chr15 99568535 99568980 -1811541 + MER9 LTR ERVK 1 509 -2 18431 89 17 27 chr15 99568982 99569747 -1810774 + HERVK9 LTR ERVK 1 772 -5144 187 250 0 83 chr15 99569747 99569807 -1810714 + MER5B DNA MER1_type 55 109 -69 18431 89 17 27 chr15 99569807 99571797 -1808724 + HERVK9 LTR ERVK 772 2786 -3130 1840 39 0 0 chr15 99571797 99572027 -1808494 + HERVK9 LTR ERVK 3711 3940 -1976 1956 129 3 9 chr15 99572028 99572353 -1808168 + HERVK9 LTR ERVK 4583 4905 -1011 1784 82 0 0 chr15 99572387 99572607 -1807914 + AluY SINE Alu 1 220 -91 2065 133 13 0 chr15 99572723 99573025 -1807496 + AluSp SINE Alu 1 306 -7 253 289 19 19 chr15 99573420 99573524 -1806997 + LTR49-int LTR ERV1 2417 2520 -3811 384 22 0 0 chr15 99573738 99573783 -1806738 + (CA)n Simple_repeat Simple_repeat 1 45 0 2076 133 0 0 chr15 99573783 99574069 -1806452 - AluSx SINE Alu -24 288 3 225 0 0 0 chr15 99574071 99574099 -1806422 + (TG)n Simple_repeat Simple_repeat 1 53 0 225 0 0 0 chr15 99574099 99574124 -1806397 + (TG)n Simple_repeat Simple_repeat 2 26 0 2011 172 0 0 chr15 99574135 99574437 -1806084 - AluSx SINE Alu -10 302 1 608 257 52 29 chr15 99574437 99574647 -1805874 + LTR57-int LTR ERVL 361 575 -4768 1686 201 3 10 chr15 99574674 99574978 -1805543 - AluJb SINE Alu -8 304 3 2384 176 61 75 chr15 99574988 99575457 -1805064 + LTR49-int LTR ERV1 1010 1484 -4847 1440 201 58 4 chr15 99575457 99575731 -1804790 - AluJo SINE Alu -23 289 1 2384 176 61 75 chr15 99575731 99575819 -1804702 + LTR49-int LTR ERV1 1484 1572 -4759 2020 138 0 7 chr15 99575819 99576108 -1804413 + AluSq SINE Alu 3 289 -24 2384 176 61 75 chr15 99576108 99576563 -1803958 + LTR49-int LTR ERV1 1572 3853 -2478 825 228 68 28 chr15 99576956 99577284 -1803237 + LTR49-int LTR ERV1 3729 4099 -2232 1836 187 3 0 chr15 99577284 99577594 -1802927 + AluJb SINE Alu 1 311 -1 825 228 68 28 chr15 99577594 99577647 -1802874 + LTR49-int LTR ERV1 4099 4148 -2183 1861 164 7 3 chr15 99577702 99577995 -1802526 - AluSx SINE Alu -18 294 1 29 47 0 0 chr15 99578027 99578070 -1802451 + AT_rich Low_complexity Low_complexity 1 43 0 3278 165 36 103 chr15 99578122 99578418 -1802103 + LTR49-int LTR ERV1 3363 3677 -2654 1693 192 3 10 chr15 99578418 99578709 -1801812 + AluJb SINE Alu 5 293 -19 3278 165 36 103 chr15 99578709 99579495 -1801026 + LTR49-int LTR ERV1 3677 5318 -1013 566 152 0 0 chr15 99579498 99579590 -1800931 + L1PA7 LINE L1 5 96 -6365 * 13846 103 13 2 chr15 99579566 99584785 -1795736 + L1PA7 LINE L1 1135 6465 -4 2001 128 58 6 chr15 99584801 99585197 -1795324 + LTR49-int LTR ERV1 5310 5777 -639 2769 175 44 8 chr15 99585972 99586498 -1794023 + MER52A LTR ERV1 1211 1755 0 7262 206 51 28 chr15 99586501 99587153 -1793368 - L1MA3 LINE L1 -300 6005 5369 1592 198 55 3 chr15 99587153 99587446 -1793075 - AluJb SINE Alu -4 308 1 7262 206 51 28 chr15 99587446 99587883 -1792638 - L1MA3 LINE L1 -936 5369 4943 1749 103 15 37 chr15 99587883 99588155 -1792366 + AluY SINE Alu 30 295 -16 7262 206 51 28 chr15 99588155 99589516 -1791005 - L1MA3 LINE L1 -1362 4943 3614 1972 141 13 16 chr15 99589516 99589855 -1790666 - AluSx SINE Alu 0 312 1 7262 206 51 28 chr15 99589855 99590277 -1790244 - L1MA3 LINE L1 -2691 3614 2962 2392 92 0 19 chr15 99590277 99590593 -1789928 - AluY SINE Alu -1 310 1 7262 206 51 28 chr15 99590593 99590615 -1789906 - L1MA3 LINE L1 -3343 2962 2942 337 191 24 24 chr15 99590620 99590704 -1789817 + LTR45 LTR ERV1 442 525 0 699 268 65 12 chr15 99590708 99591030 -1789491 + L1M4 LINE L1 4133 4471 -1675 730 241 35 56 chr15 99591573 99591947 -1788574 - MER66A LTR ERV1 -45 433 68 2467 58 3 0 chr15 99592526 99592821 -1787700 + AluSg SINE Alu 1 296 -14 318 233 23 62 chr15 99594374 99594503 -1786018 - MLT1H LTR MaLR 0 549 426 3680 126 5 11 chr15 99596205 99596769 -1783752 - LTR6A LTR ERV1 0 564 4 250 163 0 0 chr15 99596769 99596812 -1783709 - LTR6A LTR ERV1 -521 43 1 2192 150 90 2 chr15 99596853 99597252 -1783269 - MER57B LTR ERV1 0 434 1 1282 135 131 0 chr15 99597252 99597481 -1783040 - MER57B-int LTR ERV1 0 7537 7279 697 115 23 31 chr15 99597481 99597611 -1782910 - LTR54B LTR ERV1 -367 131 3 2227 110 0 0 chr15 99597626 99597917 -1782604 + AluY SINE Alu 1 291 -20 696 136 9 0 chr15 99597917 99598027 -1782494 - MER57B-int LTR ERV1 -395 7142 7032 2225 157 33 5 chr15 99598413 99598809 -1781712 - MER57B-int LTR ERV1 -470 7067 6661 6718 118 22 39 chr15 99598809 99599742 -1780779 - MER57B-int LTR ERV1 -1358 6179 5232 2229 103 7 26 chr15 99599742 99600052 -1780469 - AluSx SINE Alu -8 304 1 6718 118 22 39 chr15 99600052 99600365 -1780156 - MER57B-int LTR ERV1 -2305 5232 4952 2137 134 0 0 chr15 99600365 99600657 -1779864 + AluSq SINE Alu 5 296 -17 6718 118 22 39 chr15 99600657 99600707 -1779814 - MER57B-int LTR ERV1 -2585 4952 4903 2351 90 3 16 chr15 99600708 99601056 -1779465 + AluY SINE Alu 1 344 0 2523 132 43 14 chr15 99601062 99601501 -1779020 - MER57B-int LTR ERV1 -2619 4918 4467 284 0 0 27 chr15 99601501 99601538 -1778983 + (TTTTA)n Simple_repeat Simple_repeat 4 39 0 7137 50 0 0 chr15 99601538 99602399 -1778122 - L1PA3 LINE L1 -13 6142 5282 * 29838 57 2 3 chr15 99602395 99606119 -1774402 - L1PA3 LINE L1 -2425 3721 4 371 99 330 11 chr15 99606122 99606213 -1774308 - MER57B-int LTR ERV1 -3069 4468 4349 1981 132 3 3 chr15 99606215 99606510 -1774011 - AluSp SINE Alu -18 295 1 4132 137 35 35 chr15 99606535 99607451 -1773070 - MER52A-int LTR ERV1 -4942 1004 88 4235 173 35 20 chr15 99607451 99608191 -1772330 - MER52A LTR ERV1 0 1755 1005 1955 217 275 0 chr15 99608196 99608712 -1771809 - MER52A LTR ERV1 -1097 658 1 2292 126 17 105 chr15 99608852 99609328 -1771193 - MER57B LTR ERV1 0 434 1 2127 122 10 6 chr15 99609718 99610030 -1770491 - AluSq SINE Alu 0 313 1 696 263 78 36 chr15 99610754 99611222 -1769299 - MLT1H1 LTR MaLR -1 589 1 207 186 0 0 chr15 99611822 99611865 -1768656 + T-rich Low_complexity Low_complexity 1 43 0 381 280 153 56 chr15 99612299 99612802 -1767719 - MLT1H1 LTR MaLR 0 555 4 1351 243 119 53 chr15 99612829 99613608 -1766913 - L1MEc LINE L1 -3212 3003 2185 1703 208 7 0 chr15 99613608 99613911 -1766610 - AluJb SINE Alu -7 305 1 1351 243 119 53 chr15 99613911 99614021 -1766500 - L1MEc LINE L1 -4030 2185 2084 1619 186 7 17 chr15 99614022 99614313 -1766208 + AluJb SINE Alu 1 288 -24 27 0 0 0 chr15 99614317 99614344 -1766177 + AT_rich Low_complexity Low_complexity 1 27 0 2152 187 172 77 chr15 99614345 99615152 -1765369 - L1MB2 LINE L1 -7 6444 5561 3613 231 101 61 chr15 99616166 99616228 -1764293 - L1MB2 LINE L1 -861 5565 5507 1154 163 110 0 chr15 99616228 99616437 -1764084 + MER46A DNA MER2_type 2 233 -3 3613 231 101 61 chr15 99616437 99617239 -1763282 - L1MB2 LINE L1 -919 5507 4738 2025 143 0 7 chr15 99617239 99617546 -1762975 - AluSx SINE Alu -7 305 1 3613 231 101 61 chr15 99617546 99617612 -1762909 - L1MB2 LINE L1 -1688 4738 4676 1767 176 0 50 chr15 99617612 99617935 -1762586 - AluSx SINE Alu -5 307 1 3613 231 101 61 chr15 99617935 99619016 -1761505 - L1MB2 LINE L1 -1750 4676 3274 265 186 34 0 chr15 99619080 99619139 -1761382 - L1MB2 LINE L1 -3096 3330 3270 359 242 39 16 chr15 99619142 99619270 -1761251 - L1MB2 LINE L1 -3096 3330 3200 2109 124 0 41 chr15 99619402 99619716 -1760805 + AluSx SINE Alu 1 301 -11 37 0 0 0 chr15 99619841 99619878 -1760643 + AT_rich Low_complexity Low_complexity 1 37 0 2093 137 3 0 chr15 99619878 99620171 -1760350 + AluSx SINE Alu 2 295 -17 2070 126 10 0 chr15 99620177 99620470 -1760051 + AluY SINE Alu 5 300 -11 183 100 0 0 chr15 99620520 99620550 -1759971 + (TG)n Simple_repeat Simple_repeat 1 30 0 2046 97 0 8 chr15 99620556 99620824 -1759697 - AluSq SINE Alu -38 275 10 293 269 16 93 chr15 99620824 99620952 -1759569 - L1MA10 LINE L1 -56 6278 6168 2311 91 0 0 chr15 99620952 99621239 -1759282 + AluY SINE Alu 5 291 -20 293 269 16 93 chr15 99621239 99621303 -1759218 - L1MA10 LINE L1 -166 6168 6101 12095 156 55 38 chr15 99621306 99621526 -1758995 - Tigger1 DNA MER2_type 0 2418 2203 1169 196 122 22 chr15 99621526 99621796 -1758725 - AluJo SINE Alu -5 297 1 12095 156 55 38 chr15 99621796 99622391 -1758130 - Tigger1 DNA MER2_type -215 2203 1619 1899 129 28 11 chr15 99622391 99622678 -1757843 - AluSg SINE Alu -18 292 1 12095 156 55 38 chr15 99622678 99623535 -1756986 - Tigger1 DNA MER2_type -799 1619 691 2214 123 0 7 chr15 99623535 99623844 -1756677 + AluSp SINE Alu 1 307 -6 12095 156 55 38 chr15 99623844 99624547 -1755974 - Tigger1 DNA MER2_type -1727 691 1 4294 194 79 78 chr15 99624547 99626310 -1754211 - L1MB2 LINE L1 -3938 2488 723 731 212 7 0 chr15 99626312 99626449 -1754072 - MLT1A1 LTR MaLR -2 363 226 * 816 115 5 1 chr15 99626440 99646024 -1734497 - CER Satellite Satellite -2 19668 1 8094 74 7 0 chr15 99646024 99647103 -1733418 - L1PA5 LINE L1 -1938 4208 3122 9746 57 14 9 chr15 99647103 99649045 -1731476 + L1PA5 LINE L1 4188 6143 -11 22 0 0 0 chr15 99649045 99649067 -1731454 + AT_rich Low_complexity Low_complexity 1 22 0 1696 206 64 11 chr15 99649094 99649530 -1730991 + L1MA8 LINE L1 5769 6227 -64 449 97 0 0 chr15 99649531 99649593 -1730928 + CER Satellite Satellite 31 92 -4 43 20 0 0 chr15 99649620 99649670 -1730851 + AT_rich Low_complexity Low_complexity 1 50 0 780 103 2 0 chr15 99649693 99651208 -1729313 - CER Satellite Satellite -3 1518 1 1924 266 22 27 chr15 99651219 99651814 -1728707 - L1MCa LINE L1 -5757 669 78 422 366 116 19 chr15 99652062 99652485 -1728036 + L2 LINE L2 2065 2528 -786 1003 197 30 0 chr15 99652795 99652998 -1727523 - MER2 DNA MER2_type -3 342 134 523 192 48 0 chr15 99653001 99653105 -1727416 - Tigger3(Golem) DNA MER2_type -1 3028 2920 387 275 0 0 chr15 99653218 99653298 -1727223 - Tigger3(Golem) DNA MER2_type -2949 80 1 * 547 232 16 8 chr15 99653298 99653422 -1727099 - MER2 DNA MER2_type -214 131 7 861 207 30 15 chr15 99653856 99654054 -1726467 - AluJo SINE Alu -10 302 102 1204 201 8 16 chr15 99655212 99655466 -1725055 - AluJo SINE Alu -4 308 57 854 205 0 35 chr15 99655493 99655664 -1724857 + AluJo SINE Alu 127 291 -21 331 117 17 17 chr15 99659306 99659366 -1721155 - Tigger1 DNA MER2_type -1167 1251 1192 * 4270 190 51 7 chr15 99659364 99660207 -1720314 - Tigger1 DNA MER2_type -1537 881 2 665 183 108 5 chr15 99660220 99660406 -1720115 - L1MCa LINE L1 -3950 2476 2272 735 197 66 22 chr15 99660408 99660545 -1719976 - AluJ SINE Alu -18 294 152 628 231 86 0 chr15 99660692 99660809 -1719712 - AluJ SINE Alu -140 172 46 6672 217 85 35 chr15 99660832 99661074 -1719447 - L1MCa LINE L1 -4175 2251 2023 2030 124 0 14 chr15 99661074 99661365 -1719156 + AluSc SINE Alu 1 287 -22 6672 217 85 35 chr15 99661365 99661437 -1719084 - L1MCa LINE L1 -4403 2023 1956 2205 123 0 13 chr15 99661437 99661738 -1718783 + AluY SINE Alu 1 297 -14 6672 217 85 35 chr15 99661738 99661795 -1718726 - L1MCa LINE L1 -4470 1956 1903 2069 123 0 7 chr15 99661795 99662095 -1718426 + AluSg1 SINE Alu 4 301 -8 6672 217 85 35 chr15 99662095 99662348 -1718173 - L1MCa LINE L1 -4523 1903 1664 2220 113 0 0 chr15 99662348 99662639 -1717882 - AluY SINE Alu -20 291 1 6672 217 85 35 chr15 99662639 99663446 -1717075 - L1MCa LINE L1 -4762 1664 899 1270 233 93 32 chr15 99663446 99663790 -1716731 - MLT1A1 LTR MaLR 0 365 1 6672 217 85 35 chr15 99663790 99664425 -1716096 - L1MCa LINE L1 -5527 899 78 850 148 0 8 chr15 99664441 99664563 -1715958 - FLAM_C SINE Alu -12 121 1 260 125 125 111 chr15 99664565 99664604 -1715917 - L1MCa LINE L1 -6331 95 53 1978 119 6 70 chr15 99664604 99664793 -1715728 - AluSq SINE Alu -7 306 145 1804 173 3 7 chr15 99664793 99665093 -1715428 - AluSx SINE Alu -13 299 1 1978 119 6 70 chr15 99665093 99665230 -1715291 - AluSq SINE Alu -168 145 1 260 125 125 111 chr15 99665230 99665262 -1715259 - L1MCa LINE L1 -6373 53 23 225 284 32 21 chr15 99665305 99665400 -1715121 - L1M4 LINE L1 -2246 3900 3805 489 310 106 35 chr15 99665477 99665816 -1714705 + L2 LINE L2 2155 2517 -797 642 230 96 6 chr15 99666123 99666300 -1714221 - MER2 DNA MER2_type 0 345 153 1579 122 64 83 chr15 99666300 99666526 -1713995 + MER4A LTR ERV1 1 219 -445 2176 130 3 0 chr15 99666526 99666827 -1713694 - AluSp SINE Alu -11 302 1 1579 122 64 83 chr15 99666827 99666960 -1713561 + MER4A LTR ERV1 219 353 -311 466 97 21 65 chr15 99666987 99667080 -1713441 + MER4A LTR ERV1 265 353 -311 473 117 11 64 chr15 99667107 99667201 -1713320 + MER4A LTR ERV1 265 353 -311 1867 144 85 25 chr15 99667213 99667567 -1712954 - THE1C LTR MaLR 0 375 1 542 130 236 24 chr15 99667625 99667748 -1712773 + MER4C LTR ERV1 300 448 -17 601 218 0 0 chr15 99667794 99667904 -1712617 - Tigger3(Golem) DNA MER2_type 0 3038 2929 3808 135 69 40 chr15 99668017 99669031 -1711490 - MER11A LTR ERVK 0 1266 3 350 270 0 0 chr15 99669049 99669123 -1711398 - Tigger3(Golem) DNA MER2_type -2955 74 1 * 711 172 39 8 chr15 99669123 99669250 -1711271 - MER2 DNA MER2_type -214 131 1 991 174 0 0 chr15 99669539 99669694 -1710827 - AluJb SINE Alu -157 155 1 2393 108 73 9 chr15 99670155 99670496 -1710025 + THE1B LTR MaLR 1 363 -1 842 243 63 60 chr15 99671085 99671418 -1709103 + Charlie1a DNA MER1_type 51 384 -1071 1382 170 109 19 chr15 99671446 99671581 -1708940 + AluJb SINE Alu 5 126 -186 6704 125 25 10 chr15 99671581 99672573 -1707948 - LTR13 LTR ERVK 0 1007 1 1382 170 109 19 chr15 99672573 99672702 -1707819 + AluJb SINE Alu 126 293 -19 2171 201 102 35 chr15 99672702 99673128 -1707393 + Charlie1a DNA MER1_type 568 964 -1797 1811 124 44 0 chr15 99673128 99673402 -1707119 - AluSx SINE Alu -20 292 7 2171 201 102 35 chr15 99673402 99673672 -1706849 + Charlie1a DNA MER1_type 964 1324 -1437 2040 117 0 45 chr15 99673672 99673980 -1706541 - AluSc SINE Alu -15 294 1 2171 201 102 35 chr15 99673980 99674057 -1706464 + Charlie1a DNA MER1_type 1324 1394 -61 21 0 0 0 chr15 99674338 99674359 -1706162 + AT_rich Low_complexity Low_complexity 1 21 0 1765 159 3 0 chr15 99674364 99674670 -1705851 + AluSx SINE Alu 1 307 0 30 27 0 0 chr15 99674822 99674859 -1705662 + AT_rich Low_complexity Low_complexity 1 37 0 762 233 0 0 chr15 99675103 99675236 -1705285 - FLAM_C SINE Alu 0 133 1 3647 164 51 11 chr15 99675285 99675933 -1704588 - L1PA16 LINE L1 0 6166 5493 2104 129 0 3 chr15 99675936 99676242 -1704279 - AluSq SINE Alu 0 305 1 1667 178 34 3 chr15 99676612 99676905 -1703616 - AluJb SINE Alu -10 302 1 2166 153 18 9 chr15 99677024 99677358 -1703163 + MER1B DNA MER1_type 1 337 0 796 251 5 43 chr15 99677713 99677924 -1702597 + LTR16C LTR ERVL 289 491 0 281 303 84 21 chr15 99678348 99678490 -1702031 + MARNA DNA Mariner 276 426 -160 4734 195 111 70 chr15 99679486 99679811 -1700710 + LOR1-int LTR ERV1 378 688 -4183 2046 120 3 26 chr15 99679811 99680120 -1700401 + AluSc SINE Alu 5 306 -3 4734 195 111 70 chr15 99680120 99681428 -1699093 + LOR1-int LTR ERV1 688 2078 -2793 7453 82 57 6 chr15 99681440 99682398 -1698123 + LTR13 LTR ERVK 1 1007 0 478 143 48 56 chr15 99682488 99682617 -1697904 + LOR1-int LTR ERV1 1584 2060 -5756 1906 159 3 0 chr15 99682617 99682919 -1697602 + AluJb SINE Alu 1 303 -9 913 161 0 0 chr15 99682959 99683102 -1697419 - FRAM SINE Alu -33 143 1 1151 178 107 105 chr15 99683155 99683734 -1696787 + LOR1-int LTR ERV1 2902 3481 -3117 474 190 36 44 chr15 99683880 99684017 -1696504 + LOR1-int LTR ERV1 3536 3671 -2927 3714 184 61 16 chr15 99884119 99884921 -1495600 + L1MB8 LINE L1 5341 6178 0 865 95 48 0 chr15 99885195 99885321 -1495200 + AluY SINE Alu 1 132 -179 213 211 39 0 chr15 99887033 99887085 -1493436 + MIR SINE MIR 89 142 -66 1019 175 7 22 chr15 99887924 99888119 -1492402 + L1MDb LINE L1 34 340 -6203 646 163 47 111 chr15 99888436 99888539 -1491982 + L1MDb LINE L1 1017 1104 -5439 2122 114 0 3 chr15 99888539 99888837 -1491684 - AluSx SINE Alu -15 297 1 646 163 47 111 chr15 99888837 99888923 -1491598 + L1MDb LINE L1 1104 1194 -5349 1084 207 76 76 chr15 99888923 99889266 -1491255 - L1MD2 LINE L1 0 6359 6017 2236 254 75 10 chr15 99889272 99889889 -1490632 + MER21B LTR ERV1 149 805 -58 301 302 66 79 chr15 99889925 99890303 -1490218 + L1MDb LINE L1 2642 3014 -3526 1513 159 133 20 chr15 99890345 99890647 -1489874 + MER1B DNA MER1_type 2 337 0 342 228 141 24 chr15 99890787 99891042 -1489479 + L1MDb LINE L1 3265 3549 -2991 391 357 69 45 chr15 99891094 99891559 -1488962 + L1MDb LINE L1 3638 4113 -2427 1902 135 36 3 chr15 99891572 99891876 -1488645 + L1MC/D LINE L1 5444 5757 -576 361 337 45 30 chr15 99892129 99892396 -1488125 - L1MCc LINE L1 -6141 282 12 1543 144 21 99 chr15 99892674 99892798 -1487723 - MLT1B LTR MaLR -63 327 195 1746 153 137 41 chr15 99892798 99893185 -1487336 - MSTB LTR MaLR 0 426 3 1543 144 21 99 chr15 99893185 99893393 -1487128 - MLT1B LTR MaLR -195 195 21 389 173 164 64 chr15 99893703 99893813 -1486708 + MIR SINE MIR 80 200 -62 244 337 71 10 chr15 99894110 99894208 -1486313 - L2 LINE L2 -67 3205 3102 1944 117 0 0 chr15 99894325 99894607 -1485914 - AluSx SINE Alu -3 309 28 414 235 119 19 chr15 99894928 99895239 -1485282 - L1ME LINE L1 -2892 3188 2847 539 261 102 37 chr15 99895261 99895506 -1485015 + MIR SINE MIR 2 262 0 2278 81 7 0 chr15 99895551 99895849 -1484672 - AluY SINE Alu -11 300 1 1835 248 131 17 chr15 99895895 99896537 -1483984 - L1ME LINE L1 -5211 859 145 457 318 27 15 chr15 99896894 99897227 -1483294 - L1MEd LINE L1 -3600 2529 2193 225 318 62 68 chr15 99897781 99897807 -1482714 - HAL1 LINE L1 -867 1640 1615 1746 158 3 3 chr15 99897807 99898104 -1482417 - AluJb SINE Alu -15 297 1 225 318 62 68 chr15 99898104 99898269 -1482252 - HAL1 LINE L1 -892 1615 1450 257 248 57 43 chr15 99898369 99898510 -1482011 - L1MEd LINE L1 -4954 1165 1023 2099 121 0 9 chr15 99898645 99898960 -1481561 + AluSx SINE Alu 1 312 0 481 266 166 6 chr15 99899237 99899406 -1481115 + MIR SINE MIR 56 251 -11 301 147 186 29 chr15 99899638 99899740 -1480781 - LTR33A LTR ERVL -1 522 405 2068 111 184 7 chr15 99900180 99900598 -1479923 - LTR14B LTR ERVK 0 608 1 529 241 63 38 chr15 99900602 99900760 -1479761 - LTR50 LTR ERVL -633 162 1 371 128 0 115 chr15 99900815 99900893 -1479628 + L1ME2 LINE L1 4903 4971 -1175 816 182 11 89 chr15 99901164 99901345 -1479176 + MLT1A1 LTR MaLR 142 379 -49 1629 204 67 18 chr15 99901366 99901767 -1478754 + L1MB8 LINE L1 5685 6105 -73 2200 76 7 0 chr15 99901864 99902154 -1478367 - AluSp SINE Alu -21 292 1 1667 130 0 0 chr15 99902685 99902924 -1477597 - AluSg SINE Alu -31 279 41 229 209 102 57 chr15 99903032 99903047 -1477474 - HAL1 LINE L1 -1409 1098 1085 1671 106 0 4 chr15 99903047 99903283 -1477238 - AluSx SINE Alu -77 235 1 229 209 102 57 chr15 99903283 99903444 -1477077 - HAL1 LINE L1 -1422 1085 914 1875 152 0 0 chr15 99903445 99903747 -1476774 - AluSx SINE Alu -10 302 1 635 245 193 31 chr15 99903752 99904074 -1476447 - HsTC2a DNA Tc2 -367 377 4 1374 151 0 34 chr15 99904074 99904313 -1476208 + AluJb SINE Alu 1 231 -81 245 136 23 0 chr15 99904317 99904361 -1476160 + L1ME2 LINE L1 4959 5003 -1143 2928 24 0 0 chr15 99904361 99904694 -1475827 + L1PA5 LINE L1 5819 6151 -3 469 224 42 0 chr15 99904741 99904884 -1475637 + L1ME2 LINE L1 4993 5141 -1005 1034 251 47 15 chr15 99904894 99905232 -1475289 + L1ME2 LINE L1 5696 6044 -120 809 89 36 0 chr15 99905332 99905444 -1475077 + Alu SINE Alu 172 287 -23 306 295 45 18 chr15 99905482 99905594 -1474927 + L1M4c LINE L1 2329 2443 -3941 355 292 302 24 chr15 99905710 99906008 -1474513 - L2 LINE L2 -1 3312 2932 218 333 13 0 chr15 99906788 99906866 -1473655 - L2 LINE L2 0 3272 3194 1913 137 8 82 chr15 99907569 99907935 -1472586 + MLT1B LTR MaLR 3 341 -49 626 322 134 25 chr15 99909043 99909765 -1470756 + L2 LINE L2 2265 3081 -191 330 26 0 0 chr15 99910167 99910206 -1470315 + (CA)n Simple_repeat Simple_repeat 1 39 0 446 213 172 24 chr15 99910978 99911147 -1469374 - LTR33A LTR ERVL 0 523 330 574 213 75 40 chr15 99911362 99911536 -1468985 - LTR50 LTR ERVL -595 200 21 1199 186 108 0 chr15 99912070 99912328 -1468193 - AluJb SINE Alu -26 286 1 212 281 31 0 chr15 99912693 99912757 -1467764 - MIR SINE MIR -75 187 122 204 254 48 32 chr15 99912952 99913015 -1467506 - L2 LINE L2 -6 3307 3244 2340 90 10 6 chr15 99913791 99914103 -1466418 + MLT2A1 LTR ERVL 87 399 -45 276 115 26 13 chr15 99914105 99914183 -1466338 + (TA)n Simple_repeat Simple_repeat 1 79 0 23 0 0 0 chr15 99914191 99914214 -1466307 + AT_rich Low_complexity Low_complexity 1 23 0 347 42 0 21 chr15 99914222 99914270 -1466251 + MLT2A1 LTR ERVL 390 436 -8 1409 246 12 0 chr15 99914274 99914615 -1465906 - L1M4 LINE L1 -804 5342 4998 1981 100 0 14 chr15 99914707 99915023 -1465498 - AluSq SINE Alu 0 312 1 480 355 29 29 chr15 99915026 99915412 -1465109 - HAL1b LINE L1 -654 694 309 2077 139 81 77 chr15 99915753 99916184 -1464337 + Tigger2a DNA MER2_type 1 433 -1 278 200 77 0 chr15 99916670 99916735 -1463786 + L1MA10 LINE L1 6200 6269 -65 808 154 31 0 chr15 99916737 99916867 -1463654 + AluJo SINE Alu 2 135 -177 293 214 14 0 chr15 99916871 99916941 -1463580 + L1MA10 LINE L1 6255 6325 -9 1679 247 123 2 chr15 99917180 99917706 -1462815 + MLT1G LTR MaLR 1 549 0 553 273 121 44 chr15 99918234 99918549 -1461972 + MLT1K LTR MaLR 187 525 -63 1310 162 42 32 chr15 99920079 99920363 -1460158 + AluJb SINE Alu 1 287 -25 2376 168 61 50 chr15 99923085 99923562 -1456959 + MLT1D LTR MaLR 23 504 -1 232 339 0 0 chr15 99923685 99923744 -1456777 - L2 LINE L2 -214 3058 3000 652 309 50 27 chr15 99923915 99924471 -1456050 + L1 LINE L1 3373 3941 -2205 362 231 55 0 chr15 99924497 99924588 -1455933 + L1MC4 LINE L1 6968 7063 -979 703 236 36 0 chr15 99924592 99924757 -1455764 + L1MC4 LINE L1 7348 7518 -524 909 209 53 64 chr15 99925062 99925345 -1455176 + L1MC4 LINE L1 7482 7761 -281 311 209 0 0 chr15 99925389 99925456 -1455065 + L1MC4 LINE L1 7841 7907 -135 217 266 156 0 chr15 99926404 99926468 -1454053 + L2 LINE L2 3202 3275 -38 653 207 0 36 chr15 99926555 99926695 -1453826 + AluJo SINE Alu 2 136 -176 2248 166 3 3 chr15 99929303 99929664 -1450857 + MLT1A1 LTR MaLR 4 364 -1 1951 118 10 7 chr15 99930431 99930727 -1449794 + AluSg SINE Alu 1 297 -13 1095 116 0 0 chr15 99930787 99930942 -1449579 + AluSp SINE Alu 140 294 -19 930 39 94 8 chr15 99931375 99931503 -1449018 + MER85 DNA T2_type 1 139 0 627 232 60 12 chr15 99933338 99933506 -1447015 + MER5B DNA MER1_type 3 178 0 1742 140 46 0 chr15 99933597 99933882 -1446639 + AluJb SINE Alu 1 298 -14 340 283 100 17 chr15 99934514 99934634 -1445887 + MER5B DNA MER1_type 5 134 -44 953 176 51 0 chr15 99934634 99934810 -1445711 - MER5A DNA MER1_type 0 189 5 29 0 0 0 chr15 99935678 99935707 -1444814 + AT_rich Low_complexity Low_complexity 1 29 0 314 223 124 5 chr15 99936137 99936249 -1444272 - MER5A DNA MER1_type -3 186 4 724 251 6 11 chr15 99937692 99937871 -1442650 + MER5B DNA MER1_type 1 178 0 775 201 33 5 chr15 99939381 99939565 -1440956 + MER5A DNA MER1_type 1 189 0 321 319 80 12 chr15 99940037 99940200 -1440321 - MIR SINE MIR -25 237 64 1718 88 8 19 chr15 99941257 99941518 -1439003 - AluSq SINE Alu -53 260 3 707 220 17 52 chr15 99942815 99942988 -1437533 + MER58B DNA MER1_type 175 341 0 222 205 0 87 chr15 99943910 99944037 -1436484 + (CCCCAG)n Simple_repeat Simple_repeat 4 119 0 35 0 0 0 chr15 99945471 99945506 -1435015 + GC_rich Low_complexity Low_complexity 1 35 0 39 74 0 0 chr15 99945608 99945689 -1434832 + GC_rich Low_complexity Low_complexity 1 81 0 27 81 0 0 chr15 99945784 99945846 -1434675 + GC_rich Low_complexity Low_complexity 1 62 0 25 90 0 0 chr15 99946029 99946096 -1434425 + GC_rich Low_complexity Low_complexity 1 67 0 212 384 38 19 chr15 99946817 99947028 -1433493 - MIR SINE MIR -29 233 19 2121 85 0 0 chr15 99947225 99947531 -1432990 + AluSg SINE Alu 14 319 0 666 142 0 55 chr15 99947932 99948059 -1432462 + L1MA3 LINE L1 6183 6302 -3 467 234 162 94 chr15 99948218 99948663 -1431858 + L1ME1 LINE L1 5385 5859 -307 1005 116 0 0 chr15 99948878 99949024 -1431497 + MER4C LTR ERV1 5 150 -315 347 213 38 106 chr15 99949273 99949433 -1431088 - LTR33A LTR ERVL -364 159 11 279 292 91 49 chr15 99949448 99949691 -1430830 + L2 LINE L2 82 334 -2980 920 270 30 72 chr15 99949731 99950164 -1430357 + MLT1J LTR MaLR 97 511 0 591 329 139 17 chr15 99950164 99950763 -1429758 + L2 LINE L2 696 1367 -1947 1574 163 13 96 chr15 99950823 99951221 -1429300 + MLT1A1 LTR MaLR 1 365 0 255 267 158 17 chr15 99952538 99952658 -1427863 - L2 LINE L2 -13 3300 3164 937 174 50 0 chr15 99952659 99952820 -1427701 + L1M3 LINE L1 5538 5706 -477 1743 114 5 146 chr15 99952838 99953216 -1427305 - MER41B LTR ERV1 -305 330 6 546 130 80 10 chr15 99953216 99953316 -1427205 + L1MB4 LINE L1 6074 6180 0 4748 126 56 8 chr15 99955094 99955866 -1424655 - Tigger3(Golem) DNA MER2_type 0 3029 2221 1628 209 71 59 chr15 99955976 99956536 -1423985 + MLT1F1 LTR MaLR 1 567 0 236 205 80 18 chr15 99957176 99957288 -1423233 + HAL1 LINE L1 2254 2372 -135 393 303 71 53 chr15 99957293 99957574 -1422947 + HAL1 LINE L1 2221 2506 -1 247 330 46 0 chr15 99957681 99957790 -1422731 - MIR SINE MIR -73 189 76 358 287 60 36 chr15 99958025 99958192 -1422329 - MIR SINE MIR -80 182 12 311 275 17 54 chr15 99958265 99958445 -1422076 + MIR3 SINE MIR 77 241 -21 2651 195 31 46 chr15 99959052 99959730 -1420791 + L1M4 LINE L1 3824 4491 -1655 579 167 0 10 chr15 99959744 99959846 -1420675 + L1PB1 LINE L1 1057 1157 -5706 8499 89 28 9 chr15 99959849 99960633 -1419888 + L1PB1 LINE L1 1311 2129 -4734 2140 105 3 0 chr15 99960633 99960929 -1419592 + AluSx SINE Alu 1 297 -15 8499 89 28 9 chr15 99960929 99961384 -1419137 + L1PB1 LINE L1 2129 2574 -4289 12393 177 13 14 chr15 99961484 99964554 -1415967 + L1PB1 LINE L1 3381 6447 -420 1805 104 0 15 chr15 99964554 99964838 -1415683 + AluY SINE Alu 29 308 0 12393 177 13 14 chr15 99964838 99964907 -1415614 + L1PB1 LINE L1 6447 6515 -352 * 15343 88 1 0 chr15 99964892 99966972 -1413549 + L1PA7 LINE L1 3313 5394 -752 2473 50 3 16 chr15 99967105 99967427 -1413094 + L1PA7 LINE L1 5831 6148 -6 2780 74 19 16 chr15 99967431 99967810 -1412711 + L1PB1 LINE L1 6486 6865 -2 21 0 0 0 chr15 99967862 99967883 -1412638 + AT_rich Low_complexity Low_complexity 1 21 0 1217 142 24 9 chr15 99967920 99968132 -1412389 + L1MB4 LINE L1 5964 6178 -2 261 211 0 40 chr15 99968147 99968223 -1412298 + L1ME1 LINE L1 5290 5362 -982 43573 37 21 2 chr15 99968224 99974259 -1406262 + L1PA3 LINE L1 1 6155 0 767 224 242 20 chr15 99974233 99974711 -1405810 + L1MD2 LINE L1 5280 5888 -471 * 2506 133 21 0 chr15 99974732 99975116 -1405405 - L1PA16 LINE L1 -344 5822 5431 1692 138 115 0 chr15 99975115 99975271 -1405250 + L1PA16 LINE L1 5828 5965 -201 * 201 39 0 0 chr15 99975271 99975297 -1405224 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 1692 138 115 0 chr15 99975297 99975436 -1405085 + L1PA16 LINE L1 5965 6157 -9 555 261 33 56 chr15 99975448 99975663 -1404858 + L1ME1 LINE L1 5891 6100 -66 184 238 12 12 chr15 99975850 99975930 -1404591 + GA-rich Low_complexity Low_complexity 2 81 0 205 319 0 0 chr15 99976357 99976429 -1404092 + C-rich Low_complexity Low_complexity 1 72 0 258 377 0 0 chr15 99976776 99976943 -1403578 + G-rich Low_complexity Low_complexity 1 167 0 462 178 0 0 chr15 99977047 99977137 -1403384 + CT-rich Low_complexity Low_complexity 1 90 0 990 88 31 6 chr15 99977570 99977730 -1402791 + L1MC1 LINE L1 5802 5965 -368 1531 162 59 4 chr15 99977731 99978002 -1402519 - AluJb SINE Alu -26 286 1 4307 230 33 4 chr15 99978004 99979135 -1401386 - L1M4 LINE L1 -852 5294 4132 1023 226 23 5 chr15 99979236 99979453 -1401068 + L1MC1 LINE L1 6108 6328 -5 241 283 62 9 chr15 99979463 99979576 -1400945 + L1P LINE L1 3714 3832 -2314 922 317 110 78 chr15 99979649 99981006 -1399515 + L1ME LINE L1 3930 5329 -817 314 239 106 0 chr15 99981138 99981241 -1399280 + L1ME LINE L1 5569 5685 -436 480 264 65 88 chr15 99981241 99981386 -1399135 - MIR SINE MIR -11 251 111 2214 99 0 0 chr15 99981386 99981689 -1398832 + AluSx SINE Alu 2 304 -8 480 264 65 88 chr15 99981689 99981759 -1398762 - MIR SINE MIR -151 111 41 305 270 42 2 chr15 99981764 99981871 -1398650 + L1ME LINE L1 5679 5786 -335 222 313 47 0 chr15 99982052 99982116 -1398405 - MER91A DNA MER1_type -12 184 118 1194 191 92 69 chr15 99982209 99982544 -1397977 + MER2 DNA MER2_type 2 344 0 567 253 154 22 chr15 99982575 99982848 -1397673 + MER110A LTR ERV1 3 311 -157 257 292 42 0 chr15 99982900 99982996 -1397525 + MER110 LTR ERV1 386 485 -6 1620 256 104 32 chr15 99983334 99983808 -1396713 - L1ME3A LINE L1 -17 6222 5784 2315 180 11 25 chr15 99983808 99984247 -1396274 + Tigger2a DNA MER2_type 2 434 0 1620 256 104 32 chr15 99984247 99984331 -1396190 - L1ME3A LINE L1 -455 5784 5707 3920 133 29 19 chr15 99984331 99984927 -1395594 - LTR43 LTR ERV1 0 602 1 1620 256 104 32 chr15 99984927 99985156 -1395365 - L1ME3A LINE L1 -532 5707 5496 2179 117 0 10 chr15 99985156 99985456 -1395065 - AluSq SINE Alu -16 297 1 1620 256 104 32 chr15 99985456 99985805 -1394716 - L1ME3A LINE L1 -743 5496 5174 1765 135 13 43 chr15 99985805 99986109 -1394412 - AluJo SINE Alu -17 295 1 1620 256 104 32 chr15 99986109 99986336 -1394185 - L1ME3A LINE L1 -1065 5174 4715 279 0 0 0 chr15 99986336 99986367 -1394154 + (CA)n Simple_repeat Simple_repeat 2 32 0 245 202 132 35 chr15 99986387 99986480 -1394041 - L1ME3A LINE L1 -1930 4285 4178 2197 127 7 0 chr15 99986480 99986787 -1393734 + AluSx SINE Alu 1 309 -3 245 202 132 35 chr15 99986787 99986807 -1393714 - L1ME3A LINE L1 -2037 4178 4161 3062 249 134 52 chr15 99986870 99988422 -1392099 - L1MEc LINE L1 -2055 4160 2451 2544 62 0 0 chr15 99988422 99988726 -1391795 - AluY SINE Alu -7 304 1 3062 249 134 52 chr15 99988726 99989088 -1391433 - L1MEc LINE L1 -3764 2451 2120 288 293 32 32 chr15 99989145 99989298 -1391223 + MER5A DNA MER1_type 12 168 -14 30 0 0 0 chr15 99990133 99990163 -1390358 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr15 99990375 99990396 -1390125 + AT_rich Low_complexity Low_complexity 1 21 0 198 103 0 0 chr15 99992126 99992155 -1388366 + (TTC)n Simple_repeat Simple_repeat 1 29 0 3085 244 38 7 chr15 99992312 99993232 -1387289 + L1ME1 LINE L1 2706 3654 -2492 1401 210 103 36 chr15 99993245 99993635 -1386886 + MLT1D LTR MaLR 90 505 0 3839 216 38 38 chr15 99993635 99994817 -1385704 + L1ME1 LINE L1 4339 5537 -705 914 270 90 36 chr15 99994799 99995163 -1385358 + L1ME1 LINE L1 5776 6115 -51 * 2582 95 30 38 chr15 99996104 99996471 -1384050 - THE1B LTR MaLR 0 364 1 737 257 25 5 chr15 99996667 99996945 -1383576 + MER20B DNA MER1_type 37 361 -422 1591 142 84 99 chr15 99996945 99997204 -1383317 - MER2 DNA MER2_type 0 345 91 2207 122 0 0 chr15 99997204 99997499 -1383022 - AluSq SINE Alu -18 295 1 1591 142 84 99 chr15 99997499 99997583 -1382938 - MER2 DNA MER2_type -254 91 7 1051 243 141 6 chr15 99997566 99997907 -1382614 + MER20B DNA MER1_type 337 723 -60 * 498 270 73 10 chr15 99998113 99998317 -1382204 - MIR SINE MIR 0 262 46 419 264 72 0 chr15 99998594 99998719 -1381802 + MER112 DNA MER1_type 121 254 -6 4541 156 77 31 chr15 100000124 100000482 -1380039 - L1MB3 LINE L1 -1 6182 5842 2381 88 3 0 chr15 100000482 100000789 -1379732 - AluSq SINE Alu -5 308 1 4541 156 77 31 chr15 100000789 100001847 -1378674 - L1MB3 LINE L1 -341 5842 4684 198 281 109 62 chr15 100002203 100002331 -1378190 - MIR3 SINE MIR -35 173 40 428 261 92 57 chr15 100002709 100002838 -1377683 + L1MC/D LINE L1 5255 5378 -778 459 0 0 0 chr15 100002838 100002889 -1377632 + (CTATA)n Simple_repeat Simple_repeat 5 55 0 428 261 92 57 chr15 100002889 100003042 -1377479 + L1MC/D LINE L1 5378 5547 -609 6499 160 43 39 chr15 100003076 100005896 -1374625 + L1PA8 LINE L1 3310 6164 -8 2187 194 24 9 chr15 100005897 100006362 -1374159 + L1P4 LINE L1 4467 4938 -1208 241 111 0 0 chr15 100006351 100006387 -1374134 + L1 LINE L1 5201 5236 -910 * 2279 132 25 11 chr15 100006388 100006745 -1373776 - THE1C LTR MaLR 0 375 14 1290 129 26 0 chr15 100006769 100007001 -1373520 + L1P4 LINE L1 5254 5491 -674 43739 34 24 1 chr15 100007003 100012370 -1368151 + L1PA15 LINE L1 4 5496 -659 8157 21 0 2 chr15 100012483 100013383 -1367138 + L1PA2 LINE L1 5255 6152 -3 4536 138 28 3 chr15 100013385 100014053 -1366468 + L1PA15 LINE L1 5474 6158 -7 1080 133 108 30 chr15 100014055 100014218 -1366303 + MSTA LTR MaLR 210 393 -35 2218 129 3 0 chr15 100014218 100014527 -1365994 - AluSp SINE Alu -3 310 1 1080 133 108 30 chr15 100014527 100014566 -1365955 + MSTA LTR MaLR 393 428 0 8442 146 86 37 chr15 100014568 100016072 -1364449 + MSTA-int LTR MaLR 3 1580 0 1881 117 156 9 chr15 100016072 100016398 -1364123 + MSTA LTR MaLR 1 374 -54 24 0 0 0 chr15 100016522 100016546 -1363975 + AT_rich Low_complexity Low_complexity 1 24 0 196 222 0 0 chr15 100016876 100016921 -1363600 + L2 LINE L2 3269 3313 0 * 369 341 121 34 chr15 100016920 100017307 -1363214 + L2 LINE L2 2183 2603 -711 308 326 153 43 chr15 100018717 100018729 -1361792 - L2 LINE L2 0 3313 3304 708 220 120 35 chr15 100018729 100018929 -1361592 - MER20 DNA MER1_type 0 219 3 308 326 153 43 chr15 100018929 100019429 -1361092 - L2 LINE L2 -9 3304 2746 247 299 15 0 chr15 100019434 100019501 -1361020 - L2 LINE L2 -46 3267 3200 470 307 212 17 chr15 100019688 100020033 -1360488 - L3 LINE CR1 -18 1559 1148 31 0 0 0 chr15 100020220 100020251 -1360270 + AT_rich Low_complexity Low_complexity 1 31 0 2550 51 0 16 chr15 100020317 100020632 -1359889 + AluY SINE Alu 1 310 -1 341 285 177 13 chr15 100021232 100021390 -1359131 - MER5A DNA MER1_type 0 189 6 203 333 58 11 chr15 100021414 100021501 -1359020 + MIR3 SINE MIR 109 199 -9 22 35 0 0 chr15 100021608 100021637 -1358884 + AT_rich Low_complexity Low_complexity 1 29 0 259 268 79 98 chr15 100021967 100022131 -1358390 + MER5B DNA MER1_type 3 163 -15 916 181 6 24 chr15 100022353 100022519 -1358002 - AluJb SINE Alu -14 298 136 1002 314 60 25 chr15 100022602 100023039 -1357482 + L3 LINE CR1 768 1219 -358 2237 117 0 0 chr15 100023241 100023540 -1356981 + AluY SINE Alu 1 299 -12 820 254 34 8 chr15 100023748 100023984 -1356537 + LTR16A LTR ERVL 157 398 -52 189 213 0 0 chr15 100024000 100024047 -1356474 + (CA)n Simple_repeat Simple_repeat 1 47 0 7623 56 4 1 chr15 100025693 100026944 -1353577 + L1PA8 LINE L1 4925 6178 0 2335 93 0 7 chr15 100027229 100027531 -1352990 - AluY SINE Alu -11 300 1 662 240 190 14 chr15 100027962 100028183 -1352338 - MIR SINE MIR 0 262 3 2170 120 0 16 chr15 100028323 100028631 -1351890 - AluSx SINE Alu -9 303 1 237 93 0 47 chr15 100028653 100028696 -1351825 - L1MA2 LINE L1 0 6305 6265 297 266 215 0 chr15 100028839 100028918 -1351603 + MIR SINE MIR 38 133 -75 2027 89 30 8 chr15 100030543 100030894 -1349627 + LTR7 LTR ERV1 1 448 -2 24568 93 38 25 chr15 100030896 100034828 -1345693 + HERVH LTR ERV1 1 3993 -3720 4166 145 0 1 chr15 100034830 100035493 -1345028 + HERVH LTR ERV1 4488 5149 -2564 1273 143 19 0 chr15 100035494 100035710 -1344811 + HERVH LTR ERV1 5600 5819 -1894 2253 93 48 13 chr15 100035710 100036087 -1344434 + HERVH LTR ERV1 7324 7713 0 2616 77 122 5 chr15 100036087 100036488 -1344033 + LTR7 LTR ERV1 1 448 -2 21 36 0 0 chr15 100036651 100036679 -1343842 + AT_rich Low_complexity Low_complexity 1 28 0 4819 136 58 18 chr15 100037005 100037874 -1342647 + MER4D LTR ERV1 1 903 0 13521 181 58 27 chr15 100038490 100040424 -1340097 + L1MA4A LINE L1 21 1894 -5111 2162 123 7 3 chr15 100040424 100040725 -1339796 + AluSc SINE Alu 1 302 -7 13521 181 58 27 chr15 100040725 100041707 -1338814 + L1MA4A LINE L1 1894 2844 -4161 2184 106 0 14 chr15 100041707 100042000 -1338521 + AluY SINE Alu 1 289 -22 214 26 79 0 chr15 100042003 100042041 -1338480 + A-rich Low_complexity Low_complexity 2 42 0 13521 181 58 27 chr15 100042041 100044394 -1336127 + L1MA4A LINE L1 2845 5535 -1470 1658 197 14 3 chr15 100044394 100044689 -1335832 + AluJo SINE Alu 1 298 -14 13521 181 58 27 chr15 100044689 100045564 -1334957 + L1MA4A LINE L1 5535 6382 -623 1713 125 81 12 chr15 100045564 100045878 -1334643 + L1MA4A LINE L1 6661 7002 -3 2270 108 10 0 chr15 100046950 100047246 -1333275 + AluSx SINE Alu 1 299 -13 1901 254 54 14 chr15 100047481 100048130 -1332391 - L1ME1 LINE L1 -19 6147 5473 231 234 47 0 chr15 100048346 100048410 -1332111 - L1ME LINE L1 -533 5588 5522 2154 131 0 3 chr15 100048588 100048886 -1331635 + AluSx SINE Alu 1 297 -15 328 286 26 102 chr15 100048910 100049176 -1331345 - L1ME4a LINE L1 -40 6081 5836 861 189 8 130 chr15 100049187 100049441 -1331080 - MER58A DNA MER1_type 0 224 2 565 254 69 72 chr15 100049459 100049589 -1330932 - L1ME4a LINE L1 -306 5815 5686 1600 177 28 18 chr15 100049589 100049871 -1330650 - AluJb SINE Alu -20 292 8 565 254 69 72 chr15 100049871 100050075 -1330446 - L1ME4a LINE L1 -435 5686 5482 335 284 93 45 chr15 100050160 100050504 -1330017 - L1ME4a LINE L1 -749 5372 5031 242 201 108 0 chr15 100050523 100050584 -1329937 + MIR SINE MIR 102 167 -61 * 382 294 8 40 chr15 100050580 100050706 -1329815 - L2 LINE L2 -2 3311 3190 497 280 47 26 chr15 100051168 100051424 -1329097 - L2 LINE L2 -290 2982 2720 492 193 221 0 chr15 100051732 100051872 -1328649 + MIR SINE MIR 87 257 -5 209 250 71 0 chr15 100052928 100052984 -1327537 + MIR SINE MIR 54 113 -95 789 211 165 58 chr15 100053016 100053343 -1327178 + L1MC4 LINE L1 7557 7918 -124 337 240 30 10 chr15 100053488 100053588 -1326933 + LTR33 LTR ERVL 381 482 -39 3937 212 21 22 chr15 100053650 100054654 -1325867 + L1PA15-16 LINE L1 1901 2903 -3946 2303 86 7 3 chr15 100055459 100055762 -1324759 - AluSp SINE Alu -9 304 1 2565 62 7 0 chr15 100055772 100056081 -1324440 - AluY SINE Alu 0 311 1 23 33 0 0 chr15 100056795 100056825 -1323696 + AT_rich Low_complexity Low_complexity 1 30 0 2115 94 0 0 chr15 100058207 100058472 -1322049 + AluSc SINE Alu 39 303 -6 209 250 54 0 chr15 100058498 100058554 -1321967 + L3b LINE CR1 1524 1582 -1 2369 100 0 0 chr15 100060674 100060973 -1319548 - AluSq SINE Alu -14 299 1 715 251 36 57 chr15 100061404 100061725 -1318796 + MLT1G3 LTR MaLR 5 285 -245 705 144 0 0 chr15 100061739 100061857 -1318664 + (TTCC)n Simple_repeat Simple_repeat 4 121 0 2124 124 10 7 chr15 100061862 100062169 -1318352 - AluSx SINE Alu -4 308 1 308 239 49 109 chr15 100062220 100062353 -1318168 + MLT1G3 LTR MaLR 364 485 -57 866 195 32 59 chr15 100062353 100062574 -1317947 + MER58C DNA MER1_type 1 215 0 308 239 49 109 chr15 100062574 100062624 -1317897 + MLT1G3 LTR MaLR 485 536 -6 225 0 0 0 chr15 100062760 100062785 -1317736 + (TC)n Simple_repeat Simple_repeat 2 26 0 226 268 0 0 chr15 100062786 100062868 -1317653 - L1MC4 LINE L1 -1346 6696 6615 261 75 0 0 chr15 100062868 100062908 -1317613 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 774 146 0 32 chr15 100062916 100063039 -1317482 - FLAM_A SINE Alu -14 119 1 713 253 153 13 chr15 100063188 100063417 -1317104 - MIR SINE MIR -1 261 1 320 258 70 23 chr15 100063900 100064028 -1316493 + MIR SINE MIR 120 253 -9 620 183 89 50 chr15 100064557 100064737 -1315784 + L1MC5 LINE L1 7733 7919 -42 182 339 98 9 chr15 100066278 100066390 -1314131 - MIR SINE MIR -51 211 90 483 227 35 14 chr15 100066931 100067072 -1313449 + MER58C DNA MER1_type 70 213 -2 4219 158 36 6 chr15 100068518 100069327 -1311194 + L1MB8 LINE L1 5346 6178 0 885 266 46 12 chr15 100069372 100069415 -1311106 - MIR SINE MIR 0 262 222 2413 93 0 0 chr15 100069415 100069717 -1310804 - AluSc SINE Alu -7 302 1 885 266 46 12 chr15 100069717 100069914 -1310607 - MIR SINE MIR -40 222 14 23 0 0 0 chr15 100069964 100069987 -1310534 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr15 100071481 100071507 -1309014 + AT_rich Low_complexity Low_complexity 1 26 0 280 238 0 0 chr15 100071807 100071870 -1308651 + MLT1H LTR MaLR 27 89 -453 650 216 120 86 chr15 100071936 100072227 -1308294 + MLT1H LTR MaLR 249 549 0 378 318 52 47 chr15 100072401 100072593 -1307928 + L1ME LINE L1 327 519 -5877 333 293 12 6 chr15 100073156 100073323 -1307198 + L1ME LINE L1 1128 1295 -5114 834 219 69 20 chr15 100073325 100073571 -1306950 - LTR40b LTR ERVL 0 462 205 546 278 79 19 chr15 100073577 100073894 -1306627 + L1ME LINE L1 1656 1991 -4596 312 282 56 60 chr15 100074020 100074272 -1306249 + L1ME LINE L1 2215 2465 -4122 537 275 117 22 chr15 100075146 100075368 -1305153 + MIR SINE MIR 20 262 0 810 223 48 57 chr15 100075562 100075983 -1304538 + L1MC5 LINE L1 7485 7901 -60 185 361 36 0 chr15 100076148 100076231 -1304290 - MIR SINE MIR -115 147 62 183 300 67 42 chr15 100076567 100076687 -1303834 - MIR SINE MIR -8 254 132 531 204 120 48 chr15 100076856 100077023 -1303498 + Charlie1 DNA MER1_type 54 232 -2529 * 587 200 37 0 chr15 100077014 100077149 -1303372 + Charlie1 DNA MER1_type 2622 2761 0 21 0 0 0 chr15 100077613 100077634 -1302887 + AT_rich Low_complexity Low_complexity 1 21 0 246 394 62 29 chr15 100078022 100078230 -1302291 + L2 LINE L2 2880 3094 -178 26 0 0 0 chr15 100078776 100078802 -1301719 + AT_rich Low_complexity Low_complexity 1 26 0 1790 42 56 0 chr15 100078802 100079016 -1301505 - AluY SINE Alu -19 292 67 225 136 68 0 chr15 100079314 100079358 -1301163 + MER57A LTR ERV1 290 336 -67 185 263 44 53 chr15 100079403 100079517 -1301004 - MIR3 SINE MIR -92 116 4 386 272 58 0 chr15 100080041 100080144 -1300377 - MIR3 SINE MIR -52 156 48 237 257 57 0 chr15 100080479 100080549 -1299972 - Charlie8 DNA MER1_type -1907 510 437 1856 126 37 0 chr15 100080608 100080906 -1299615 + AluSg SINE Alu 1 308 0 412 220 28 46 chr15 100081761 100081870 -1298651 - L2 LINE L2 0 3313 3207 1117 261 16 4 chr15 100082313 100082566 -1297955 - MIR SINE MIR 0 262 7 249 330 140 6 chr15 100082640 100082819 -1297702 + MIR3 SINE MIR 3 205 -3 26 0 0 0 chr15 100082939 100082965 -1297556 + AT_rich Low_complexity Low_complexity 1 26 0 2238 103 0 0 chr15 100083798 100084090 -1296431 - AluSc SINE Alu -17 292 1 314 301 90 36 chr15 100084244 100084410 -1296111 + MIR3 SINE MIR 9 183 -25 988 230 44 0 chr15 100086364 100086568 -1293953 - L1ME LINE L1 -513 6151 5939 7315 222 67 31 chr15 100086568 100086909 -1293612 - L1M4c LINE L1 -2989 3655 3328 890 153 0 8 chr15 100086909 100087040 -1293481 - FLAM_C SINE Alu -2 131 2 7315 222 67 31 chr15 100087040 100089214 -1291307 - L1M4c LINE L1 -3316 3328 931 2307 80 0 7 chr15 100089214 100089226 -1291295 - AluY SINE Alu -12 299 288 432 0 0 0 chr15 100089226 100089274 -1291247 + (TA)n Simple_repeat Simple_repeat 2 49 0 2307 80 0 7 chr15 100089274 100089547 -1290974 - AluY SINE Alu -23 288 16 7315 222 67 31 chr15 100089547 100090506 -1290015 - L1M4c LINE L1 -5713 931 8 1094 171 20 9 chr15 100090513 100090784 -1289737 - L1ME LINE L1 -725 5439 5169 1332 227 61 37 chr15 100090789 100091164 -1289357 - L1MB8 LINE L1 -14 6164 5781 1946 222 70 26 chr15 100091203 100091715 -1288806 + L1ME1 LINE L1 5647 6334 0 217 132 0 0 chr15 100092274 100092312 -1288209 + (GA)n Simple_repeat Simple_repeat 2 39 0 309 51 0 0 chr15 100092318 100092357 -1288164 + (TG)n Simple_repeat Simple_repeat 2 40 0 396 0 0 0 chr15 100092868 100092912 -1287609 + (CA)n Simple_repeat Simple_repeat 2 45 0 2344 88 0 7 chr15 100092912 100093209 -1287312 - AluSc SINE Alu -14 295 1 209 219 0 27 chr15 100094354 100094427 -1286094 + A-rich Low_complexity Low_complexity 3 73 0 289 248 101 46 chr15 100094886 100094995 -1285526 + MIR SINE MIR 30 144 -118 2279 117 0 0 chr15 100096980 100097289 -1283232 + AluSc SINE Alu 1 309 0 327 320 33 115 chr15 100097671 100098002 -1282519 - L2 LINE L2 -16 3256 2953 338 202 22 101 chr15 100098330 100098419 -1282102 - MER94 DNA DNA -51 83 2 278 250 120 9 chr15 100098465 100098573 -1281948 - L2 LINE L2 -513 2801 2682 418 321 67 0 chr15 100098573 100098707 -1281814 - MER91A DNA MER1_type 0 196 54 2352 98 7 0 chr15 100099252 100099557 -1280964 - AluSp SINE Alu -6 307 1 693 199 66 0 chr15 100100590 100100741 -1279780 + L1MB8 LINE L1 4958 5118 -1028 1454 186 4 26 chr15 100100746 100101015 -1279506 + AluJo SINE Alu 5 267 -45 1403 188 48 52 chr15 100101086 100101984 -1278537 + L1MB8 LINE L1 5120 6178 0 346 271 131 9 chr15 100104757 100104864 -1275657 + L2 LINE L2 3194 3313 0 294 295 99 25 chr15 100105649 100105949 -1274572 + MLT1J LTR MaLR 108 450 0 581 137 110 55 chr15 100106022 100106052 -1274469 + L1M4 LINE L1 5160 5187 -959 2067 136 0 3 chr15 100106052 100106353 -1274168 + AluSx SINE Alu 1 300 -12 581 137 110 55 chr15 100106353 100106468 -1274053 + L1M4 LINE L1 5187 5313 -833 861 181 30 6 chr15 100107215 100107381 -1273140 + LTR41 LTR ERVL 1 170 -603 724 243 191 0 chr15 100107427 100107694 -1272827 + LTR41 LTR ERVL 346 663 -110 1847 167 3 0 chr15 100108577 100108859 -1271662 - AluJo SINE Alu -5 307 25 225 314 14 0 chr15 100108869 100108939 -1271582 + L2 LINE L2 2915 2985 -287 711 278 56 5 chr15 100109056 100109254 -1271267 + MIR SINE MIR 5 212 -50 329 267 63 100 chr15 100109627 100109897 -1270624 + L1ME4a LINE L1 5761 6020 -101 191 245 113 0 chr15 100110011 100110064 -1270457 - MIR3 SINE MIR -47 161 103 440 344 47 5 chr15 100111360 100111572 -1268949 + MIR SINE MIR 21 241 -21 280 309 152 44 chr15 100112116 100112320 -1268201 + MIR SINE MIR 29 254 -8 434 139 14 42 chr15 100113259 100113403 -1267118 + (CAGAGA)n Simple_repeat Simple_repeat 5 144 0 23 0 0 0 chr15 100113570 100113593 -1266928 + AT_rich Low_complexity Low_complexity 1 23 0 2326 79 10 0 chr15 100113928 100114219 -1266302 + AluSg SINE Alu 1 294 -16 885 288 96 22 chr15 100114940 100115346 -1265175 + MER115 DNA AcHobo 23 458 -235 375 115 0 0 chr15 100115347 100115399 -1265122 + Zaphod DNA AcHobo 3980 4031 0 278 281 231 0 chr15 100116046 100116167 -1264354 - MIR SINE MIR -69 193 45 382 209 70 62 chr15 100116947 100117076 -1263445 + Charlie8 DNA MER1_type 44 173 -2244 1480 249 23 46 chr15 100117342 100117929 -1262592 - L1ME LINE L1 -519 5651 5087 2364 102 0 0 chr15 100117929 100118233 -1262288 + AluY SINE Alu 2 305 -6 1480 249 23 46 chr15 100118233 100118277 -1262244 - L1ME LINE L1 -1083 5087 5043 303 167 0 17 chr15 100118281 100118341 -1262180 - MER3 DNA MER1_type 0 2585 2527 * 309 216 108 0 chr15 100118322 100118396 -1262125 + MER3 DNA MER1_type 128 209 0 * 446 141 0 0 chr15 100118340 100118404 -1262117 - MER3 DNA MER1_type -106 103 40 627 262 116 13 chr15 100118621 100118846 -1261675 - MER112 DNA MER1_type -12 248 1 315 0 0 0 chr15 100120987 100121022 -1259499 + (TG)n Simple_repeat Simple_repeat 2 36 0 353 224 24 12 chr15 100121239 100121324 -1259197 + L2 LINE L2 3188 3273 -40 357 311 51 81 chr15 100121371 100121520 -1259001 - MIR SINE MIR -14 248 107 1872 157 0 10 chr15 100121520 100121819 -1258702 + AluSx SINE Alu 1 296 -16 357 311 51 81 chr15 100121819 100121904 -1258617 - MIR SINE MIR -155 107 21 2267 109 0 6 chr15 100125309 100125622 -1254899 + AluSx SINE Alu 1 311 -1 1579 184 26 0 chr15 100126993 100127260 -1253261 + AluJb SINE Alu 2 275 -37 490 275 114 10 chr15 100127699 100127892 -1252629 + L2 LINE L2 3078 3290 -23 296 62 0 42 chr15 100127988 100128036 -1252485 + (TTTTC)n Simple_repeat Simple_repeat 3 48 0 219 129 0 0 chr15 100128038 100128069 -1252452 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 2188 95 20 7 chr15 100128071 100128366 -1252155 - AluSg SINE Alu -11 299 1 777 235 21 5 chr15 100128777 100128964 -1251557 + MIR SINE MIR 73 262 0 1580 275 84 96 chr15 100128996 100129661 -1250860 + MER4A LTR ERV1 1 657 -7 25 0 0 0 chr15 100129670 100129695 -1250826 + AT_rich Low_complexity Low_complexity 1 25 0 248 220 0 0 chr15 100129826 100129876 -1250645 - L2 LINE L2 0 3313 3264 1972 171 0 0 chr15 100130766 100131071 -1249450 - AluJb SINE Alu -7 305 1 184 343 96 0 chr15 100131446 100131519 -1249002 - L2 LINE L2 -43 3270 3191 2252 148 47 3 chr15 100131876 100132235 -1248286 - THE1C LTR MaLR 0 375 1 11368 113 10 30 chr15 100132235 100133847 -1246674 - THE1C-int LTR MaLR -1 1579 1 2167 150 24 34 chr15 100133847 100134226 -1246295 - THE1C LTR MaLR 0 375 1 2097 112 0 3 chr15 100134749 100135043 -1245478 + AluSx SINE Alu 3 295 -17 292 294 130 0 chr15 100135426 100135518 -1245003 - L2 LINE L2 -1 3271 3168 1849 98 0 0 chr15 100135725 100135969 -1244552 + AluSx SINE Alu 50 293 -19 210 245 0 0 chr15 100137247 100137296 -1243225 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 246 215 32 65 chr15 100137296 100137389 -1243132 + MER112 DNA MER1_type 66 155 -105 2001 134 7 0 chr15 100137397 100137695 -1242826 - AluSx SINE Alu -9 303 4 247 47 0 47 chr15 100137969 100138012 -1242509 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 2145 99 10 0 chr15 100138012 100138316 -1242205 - AluSq SINE Alu -6 307 1 241 224 0 17 chr15 100139093 100139151 -1241370 + C-rich Low_complexity Low_complexity 4 60 0 496 152 0 0 chr15 100139739 100139818 -1240703 + AluJ/FRAM SINE Alu 221 299 -13 224 296 20 51 chr15 100139831 100139929 -1240592 + MIR3 SINE MIR 3 97 -111 1740 120 45 0 chr15 100139941 100140251 -1240270 - AluSc SINE Alu 0 322 1 1508 180 17 17 chr15 100140742 100141042 -1239479 + AluJo SINE Alu 3 302 -10 1980 131 10 0 chr15 100141062 100141353 -1239168 + AluSx SINE Alu 1 294 -18 1796 148 14 3 chr15 100143643 100143940 -1236581 - AluSx SINE Alu -12 300 1 9166 41 6 1 chr15 100144249 100145315 -1235206 + MER11C LTR ERVK 1 1071 0 570 179 19 9 chr15 100145623 100145729 -1234792 - U6 snRNA snRNA 0 107 1 883 153 0 0 chr15 100146044 100146175 -1234346 - FLAM_C SINE Alu -1 132 2 1786 155 0 10 chr15 100146256 100146559 -1233962 - AluJb SINE Alu -12 300 1 228 163 0 0 chr15 100146942 100146985 -1233536 + (CA)n Simple_repeat Simple_repeat 2 44 0 396 0 0 0 chr15 100147670 100147714 -1232807 + (CA)n Simple_repeat Simple_repeat 1 44 0 1977 129 0 20 chr15 100151708 100152010 -1228511 + AluSx SINE Alu 1 296 -16 753 124 0 0 chr15 100152458 100152563 -1227958 - U6 snRNA snRNA -1 106 2 1698 125 4 0 chr15 100152582 100152830 -1227691 + AluSp SINE Alu 1 249 -64 751 182 8 0 chr15 100152980 100153101 -1227420 + FLAM_A SINE Alu 1 122 -11 2701 259 131 26 chr15 100154444 100154728 -1225793 - HAL1 LINE L1 -1172 1335 1082 1496 145 57 57 chr15 100154728 100155024 -1225497 - AluJo SINE Alu -16 296 1 2701 259 131 26 chr15 100155024 100155781 -1224740 - HAL1 LINE L1 -1425 1082 153 4290 104 62 21 chr15 100155781 100156444 -1224077 + LTR8 LTR ERV1 1 690 -1 2701 259 131 26 chr15 100156444 100156588 -1223933 - HAL1 LINE L1 -2354 153 25 486 267 225 26 chr15 100156952 100157049 -1223472 + MIR SINE MIR 34 110 -152 312 27 0 0 chr15 100157049 100157086 -1223435 + (TAA)n Simple_repeat Simple_repeat 2 38 0 486 267 225 26 chr15 100157086 100157179 -1223342 + MIR SINE MIR 110 262 0 237 336 117 16 chr15 100157169 100157297 -1223224 + L2 LINE L2 3114 3254 -18 * 2137 99 0 3 chr15 100157688 100157980 -1222541 - AluSq SINE Alu -22 291 1 824 234 73 19 chr15 100158032 100158293 -1222228 + L1ME3A LINE L1 5892 6166 -4 1946 148 33 21 chr15 100158775 100159112 -1221409 - MER7A DNA MER2_type 0 346 8 1056 222 115 17 chr15 100160097 100160453 -1220068 + MLT1C LTR MaLR 65 455 -12 2210 86 10 3 chr15 100160614 100160917 -1219604 + AluSx SINE Alu 1 305 -7 721 248 79 53 chr15 100162096 100162362 -1218159 + MLT1K LTR MaLR 5 277 -311 467 221 91 53 chr15 100162410 100162618 -1217903 + MLT1K LTR MaLR 373 588 0 276 341 22 0 chr15 100163957 100164060 -1216461 - MIR3 SINE MIR -31 177 71 363 202 266 0 chr15 100164693 100164787 -1215734 + AluJb SINE Alu 176 294 -8 199 54 54 0 chr15 100164872 100164909 -1215612 + CT-rich Low_complexity Low_complexity 2 40 0 381 156 5 71 chr15 100164909 100165003 -1215518 - AluJb SINE Alu -22 280 203 245 253 0 38 chr15 100165003 100165082 -1215439 + AluJb SINE Alu 179 254 -48 21 57 0 0 chr15 100165082 100165117 -1215404 + AT_rich Low_complexity Low_complexity 1 35 0 2029 116 3 0 chr15 100166196 100166504 -1214017 + AluSx SINE Alu 1 309 0 25706 38 2 1 chr15 100167079 100170634 -1209887 + L1PA5 LINE L1 2273 5831 -323 396 0 0 0 chr15 100175499 100175543 -1204978 + (TG)n Simple_repeat Simple_repeat 1 44 0 992 226 114 10 chr15 100176177 100176474 -1204047 + L1ME1 LINE L1 5809 6136 -30 306 269 0 43 chr15 100176768 100176861 -1203660 - L1MEc LINE L1 -1697 4518 4430 201 121 0 0 chr15 100177783 100177816 -1202705 + (TG)n Simple_repeat Simple_repeat 2 34 0 279 331 58 33 chr15 100178292 100178413 -1202108 - L2 LINE L2 -15 3257 3134 185 255 39 0 chr15 100178512 100178563 -1201958 - L2 LINE L2 -266 3047 2995 359 227 27 13 chr15 100178867 100178942 -1201579 + Charlie1 DNA MER1_type 6 81 -2680 6333 148 38 29 chr15 100180615 100180777 -1199744 - L1M1 LINE L1 -743 5403 5244 2194 94 0 13 chr15 100180777 100181076 -1199445 - AluSq SINE Alu -18 295 1 6333 148 38 29 chr15 100181076 100182268 -1198253 - L1M1 LINE L1 -902 5244 4118 493 224 38 55 chr15 100182255 100182492 -1198029 - L1MEc LINE L1 -2817 3398 3166 * 229 241 0 0 chr15 100182535 100182589 -1197932 - L1MEc LINE L1 -4452 1944 1891 23 68 0 0 chr15 100182950 100182994 -1197527 + AT_rich Low_complexity Low_complexity 1 44 0 2104 140 7 0 chr15 100183644 100183952 -1196569 - AluSx SINE Alu -2 310 1 201 239 14 42 chr15 100184655 100184726 -1195795 + CT-rich Low_complexity Low_complexity 4 72 0 703 265 117 14 chr15 100185303 100185526 -1194995 - MIR SINE MIR -13 249 4 240 284 95 0 chr15 100185758 100185832 -1194689 - MLT-int LTR MaLR -1193 542 462 1219 261 222 10 chr15 100186129 100186262 -1194259 - MLT1G1 LTR MaLR -5 590 486 2174 122 3 0 chr15 100186262 100186573 -1193948 + AluSx SINE Alu 1 312 0 1219 261 222 10 chr15 100186573 100186926 -1193595 - MLT1G1 LTR MaLR -109 486 1 234 0 0 0 chr15 100186985 100187011 -1193510 + (T)n Simple_repeat Simple_repeat 1 26 0 3968 36 0 0 chr15 100187147 100187588 -1192933 + L1PA5 LINE L1 5706 6146 -8 30 27 0 0 chr15 100187588 100187625 -1192896 + AT_rich Low_complexity Low_complexity 1 37 0 306 260 19 10 chr15 100187774 100187878 -1192643 - L1M4 LINE L1 -1950 4196 4092 377 172 164 15 chr15 100187888 100188022 -1192499 + L1ME4a LINE L1 5964 6117 -4 830 183 0 0 chr15 100188491 100188617 -1191904 + FLAM_C SINE Alu 6 131 -12 1316 147 13 36 chr15 100189621 100189845 -1190676 - MER20 DNA MER1_type 0 219 1 597 227 8 17 chr15 100190160 100190279 -1190242 + Tigger3(Golem) DNA MER2_type 2921 3038 0 851 157 14 7 chr15 100190293 100190440 -1190081 - L1MB8 LINE L1 -2 6176 6029 589 248 158 24 chr15 100190800 100191131 -1189390 - L1MC4a LINE L1 -321 5800 5514 403 231 200 31 chr15 100191254 100191574 -1188947 - L1MC4a LINE L1 -831 5315 4942 675 349 128 22 chr15 100191876 100192432 -1188089 + L2 LINE L2 2247 2861 -453 645 150 0 0 chr15 100193008 100193108 -1187413 - FRAM SINE Alu -33 143 44 2270 117 7 0 chr15 100193139 100193447 -1187074 - AluSx SINE Alu -2 310 1 257 0 30 0 chr15 100193645 100193678 -1186843 + (TG)n Simple_repeat Simple_repeat 1 34 0 323 266 13 0 chr15 100193750 100193829 -1186692 - L2 LINE L2 -4 3309 3230 334 302 61 10 chr15 100193877 100194069 -1186452 - MIR SINE MIR -4 258 19 299 256 173 0 chr15 100194470 100194603 -1185918 - L2 LINE L2 -793 2521 2366 430 183 275 38 chr15 100194973 100195101 -1185420 - MER3 DNA MER1_type 0 209 51 823 174 7 27 chr15 100195101 100195250 -1185271 + MER2 DNA MER2_type 1 146 -199 847 236 30 5 chr15 100195748 100195951 -1184570 + MER3 DNA MER1_type 2 209 0 788 238 108 0 chr15 100196201 100196386 -1184135 + MIR SINE MIR 13 217 -45 2260 120 7 0 chr15 100197868 100198176 -1182345 + AluSq SINE Alu 1 310 -3 476 80 34 11 chr15 100198192 100198280 -1182241 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 467 132 13 0 chr15 100198351 100198427 -1182094 - MER96 DNA MER1_type? -2 173 97 2018 127 0 0 chr15 100199095 100199401 -1181120 + AluSx SINE Alu 1 306 0 3266 246 42 28 chr15 100199810 100200933 -1179588 - L1MCc LINE L1 -4963 1459 11 195 250 36 98 chr15 100201136 100201248 -1179273 + MIR3 SINE MIR 74 178 -30 1083 185 89 37 chr15 100201422 100201747 -1178774 + Charlie1 DNA MER1_type 2413 2754 -7 571 118 194 0 chr15 100201964 100202057 -1178464 + HY1 scRNA scRNA 1 111 -1 2013 82 0 4 chr15 100202281 100202536 -1177985 - L1PA8 LINE L1 -7 6165 5912 385 303 132 30 chr15 100202863 100203233 -1177288 + L2 LINE L2 1640 2047 -1267 350 296 43 43 chr15 100204611 100204773 -1175748 + MER92C LTR ERV1 1 162 -392 352 203 29 0 chr15 100204826 100204895 -1175626 + MER92C LTR ERV1 484 554 0 271 175 88 0 chr15 100205088 100205145 -1175376 + MER92C LTR ERV1 493 554 0 312 164 49 16 chr15 100205407 100205468 -1175053 + MER116 DNA Mariner 15 77 -3 1318 191 120 37 chr15 100205677 100206002 -1174519 - MER21B LTR ERV1 -11 852 501 17214 145 61 54 chr15 100206008 100207952 -1172569 + MER51B-int LTR ERV1 518 2446 -5370 2318 99 3 0 chr15 100207952 100208255 -1172266 + AluSc SINE Alu 1 304 -5 17214 145 61 54 chr15 100208255 100210341 -1170180 + MER51B-int LTR ERV1 2446 4579 -3237 256 0 0 0 chr15 100210337 100210367 -1170154 + MER51B-int LTR ERV1 5484 5513 -2303 * 13006 107 41 27 chr15 100210366 100211972 -1168549 + MER51B-int LTR ERV1 5249 6831 -985 2201 118 7 0 chr15 100211972 100212276 -1168245 + AluSq SINE Alu 1 306 -7 13006 107 41 27 chr15 100212276 100212596 -1167925 + MER51B-int LTR ERV1 6831 7145 -671 195 42 0 0 chr15 100212596 100212620 -1167901 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 13006 107 41 27 chr15 100212620 100213007 -1167514 + MER51B-int LTR ERV1 7145 7816 0 2272 77 34 125 chr15 100213008 100213423 -1167098 + MER51B LTR ERV1 1 377 0 864 203 42 24 chr15 100213423 100213635 -1166886 - MER21B LTR ERV1 -548 315 100 223 288 122 14 chr15 100213988 100214127 -1166394 + L3 LINE CR1 1065 1218 -359 590 235 235 31 chr15 100214406 100214602 -1165919 - MIR SINE MIR -14 248 13 1820 158 74 16 chr15 100214886 100215209 -1165312 + MER2 DNA MER2_type 2 343 -1 226 314 163 0 chr15 100215304 100215378 -1165143 - MER20B DNA MER1_type -336 447 360 1425 164 0 21 chr15 100215378 100215616 -1164905 + MER2 DNA MER2_type 1 233 -112 1064 202 88 4 chr15 100215722 100215960 -1164561 + L1MC/D LINE L1 5341 5598 -644 227 271 135 0 chr15 100216466 100216562 -1163959 + LTR33 LTR ERVL 314 422 -99 523 268 77 1 chr15 100216564 100216706 -1163815 - MER5A DNA MER1_type 0 189 27 1011 145 34 28 chr15 100216892 100217071 -1163450 + LTR9 LTR ERV1 1 180 -432 367 299 67 63 chr15 100217259 100217543 -1162978 + MER41E LTR ERV1 166 450 -62 573 165 65 10 chr15 100217705 100217844 -1162677 - MER5A DNA MER1_type -3 186 1 269 240 173 0 chr15 100218538 100218613 -1161908 + L2 LINE L2 3222 3309 -4 22 0 0 0 chr15 100218736 100218758 -1161763 + AT_rich Low_complexity Low_complexity 1 22 0 223 256 40 88 chr15 100219267 100219392 -1161129 + MER5B DNA MER1_type 1 119 -59 1355 221 170 14 chr15 100220107 100220127 -1160394 - LTR54B LTR ERV1 -2 496 480 2228 116 0 0 chr15 100220127 100220429 -1160092 + AluSx SINE Alu 1 302 -10 1355 221 170 14 chr15 100220429 100220837 -1159684 - LTR54B LTR ERV1 -18 480 1 180 0 0 0 chr15 100220895 100220915 -1159606 + (A)n Simple_repeat Simple_repeat 1 20 0 705 279 24 79 chr15 100221215 100221528 -1158993 + L2 LINE L2 2755 3052 -261 1370 182 108 30 chr15 100221531 100221896 -1158625 - MSTC LTR MaLR 0 396 1 262 242 61 0 chr15 100222013 100222079 -1158442 + L2 LINE L2 3226 3295 -18 2480 74 0 0 chr15 100227213 100227511 -1153010 + AluSc SINE Alu 1 298 -11 534 206 95 0 chr15 100228545 100228671 -1151850 - L1MC3 LINE L1 -2 7783 7646 * 1131 213 80 0 chr15 100228668 100228954 -1151567 - L1MC3 LINE L1 -665 7120 6812 23 68 0 0 chr15 100229033 100229077 -1151444 + AT_rich Low_complexity Low_complexity 1 44 0 2493 51 0 3 chr15 100230553 100230847 -1149674 + AluY SINE Alu 1 293 -18 1984 133 0 35 chr15 100231379 100231694 -1148827 - AluJb SINE Alu -8 304 1 2171 138 0 0 chr15 100231822 100232120 -1148401 - AluSx SINE Alu -14 298 1 876 144 0 0 chr15 100232160 100232299 -1148222 - AluJo/FRAM SINE Alu -12 300 162 510 173 0 0 chr15 100232299 100232380 -1148141 - FRAM/FAM SINE Alu -97 79 1 1970 142 7 3 chr15 100234331 100234641 -1145880 + AluSq SINE Alu 1 311 -2 956 176 33 11 chr15 100234762 100234944 -1145577 - MER58A DNA MER1_type 0 224 39 1554 127 13 4 chr15 100234983 100235211 -1145310 + MER30 DNA MER1_type 1 230 0 514 213 41 0 chr15 100236374 100236496 -1144025 + Charlie1 DNA MER1_type 2635 2761 0 580 188 144 44 chr15 100236513 100236673 -1143848 + MIR SINE MIR 86 261 -1 347 264 39 77 chr15 100237069 100237224 -1143297 - MIR3 SINE MIR -22 186 38 332 313 80 25 chr15 100237227 100237422 -1143099 + MIR SINE MIR 16 218 -44 22 0 0 0 chr15 100237871 100237893 -1142628 + AT_rich Low_complexity Low_complexity 1 22 0 2104 108 14 0 chr15 100242547 100242844 -1137677 - AluSx SINE Alu -11 301 1 14943 66 1 1 chr15 100243853 100245770 -1134751 - L1P LINE L1 -1049 5097 3181 23640 91 17 11 chr15 100245881 100249227 -1131294 - L1P LINE L1 -2771 3375 11 2082 113 3 26 chr15 100249236 100249545 -1130976 - AluSg SINE Alu -8 302 1 401 150 30 50 chr15 100249759 100249859 -1130662 + MER104 DNA Tc2 6 103 -77 1903 118 0 14 chr15 100249978 100250258 -1130263 - AluSx SINE Alu -26 286 11 303 318 140 63 chr15 100250312 100250627 -1129894 + L2 LINE L2 2883 3221 -51 3507 166 51 28 chr15 100251194 100251903 -1128618 - LTR8A LTR ERV1 0 727 3 267 86 0 0 chr15 100253497 100253532 -1126989 - L1PA15 LINE L1 -13 6152 6118 4754 91 14 16 chr15 100253532 100254223 -1126298 - L1PA13 LINE L1 -4 6159 5470 2251 94 0 0 chr15 100254492 100254790 -1125731 - AluSp SINE Alu -15 298 1 2246 95 0 16 chr15 100255177 100255494 -1125027 + AluSx SINE Alu 1 312 0 259 231 19 67 chr15 100255899 100256003 -1124518 - MLT1J1 LTR MaLR -285 161 63 183 80 0 0 chr15 100257659 100257684 -1122837 + (GA)n Simple_repeat Simple_repeat 1 25 0 252 281 66 25 chr15 100258616 100258737 -1121784 + MIR SINE MIR 14 139 -123 180 0 0 0 chr15 100259040 100259060 -1121461 + (CA)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr15 100259901 100259929 -1120592 + AT_rich Low_complexity Low_complexity 1 28 0 2001 127 111 0 chr15 100261307 100261623 -1118898 + MER47A DNA MER2_type 16 366 0 560 283 35 57 chr15 100262785 100263015 -1117506 - MIR SINE MIR -10 252 28 548 242 135 6 chr15 100263255 100263449 -1117072 - MER20B DNA MER1_type 0 219 2 189 147 0 0 chr15 100263763 100263797 -1116724 + (GGAA)n Simple_repeat Simple_repeat 4 37 0 1219 286 54 45 chr15 100264795 100265534 -1114987 - L1MEd LINE L1 -4915 1204 459 225 309 21 21 chr15 100265942 100266036 -1114485 - L1MEd LINE L1 -6025 94 1 1186 254 37 103 chr15 100266281 100267123 -1113398 + HAL1 LINE L1 1722 2507 0 24 0 0 0 chr15 100267123 100267147 -1113374 + AT_rich Low_complexity Low_complexity 1 24 0 228 224 95 64 chr15 100267226 100267490 -1113031 + L1M4 LINE L1 4281 4552 -1594 351 310 105 39 chr15 100267500 100267729 -1112792 + L1M4 LINE L1 4585 4828 -1318 389 239 22 22 chr15 100268048 100268140 -1112381 + Tigger6 DNA MER2_type 1503 1594 -3 31 44 0 0 chr15 100268157 100268202 -1112319 + AT_rich Low_complexity Low_complexity 1 45 0 443 351 39 22 chr15 100268424 100268451 -1112070 - L1ME4a LINE L1 -159 5962 5937 216 0 0 0 chr15 100268451 100268475 -1112046 + (GA)n Simple_repeat Simple_repeat 2 25 0 443 351 39 22 chr15 100268475 100268989 -1111532 - L1ME4a LINE L1 -184 5937 5412 287 300 93 57 chr15 100268997 100269414 -1111107 - L1ME4a LINE L1 -776 5370 4970 1634 176 3 23 chr15 100269414 100269716 -1110805 - AluJb SINE Alu -16 296 1 287 300 93 57 chr15 100269716 100270181 -1110340 - L1ME4a LINE L1 -1176 4970 4456 2095 127 3 0 chr15 100270248 100270547 -1109974 + AluSx SINE Alu 1 300 -12 1975 141 13 3 chr15 100270967 100271272 -1109249 + AluSx SINE Alu 1 308 -4 469 327 105 38 chr15 100271630 100272077 -1108444 - L1M4 LINE L1 -1313 4833 4357 511 312 84 4 chr15 100272344 100272594 -1107927 - MLT1I LTR MaLR -69 340 71 306 94 19 75 chr15 100273000 100273053 -1107468 - MLT1K LTR MaLR -7 581 532 591 260 272 9 chr15 100273058 100273400 -1107121 + L2 LINE L2 2477 2908 -406 369 309 115 0 chr15 100274002 100274167 -1106354 + MER5A DNA MER1_type 1 184 -5 2299 171 44 21 chr15 100276258 100276690 -1103831 + MLT1C LTR MaLR 22 463 -4 265 304 20 20 chr15 100276816 100276918 -1103603 - L2 LINE L2 -670 2644 2543 3523 177 23 0 chr15 100276919 100277573 -1102948 + L1MB1 LINE L1 5385 6053 -115 1725 163 28 0 chr15 100277574 100277862 -1102659 - AluJb SINE Alu -16 296 1 638 310 72 58 chr15 100277954 100278580 -1101941 - L2 LINE L2 -867 2447 1813 199 328 76 25 chr15 100278742 100278861 -1101660 - L2 LINE L2 -94 3178 3054 320 222 56 28 chr15 100278986 100279094 -1101427 - MER103 DNA DNA -36 130 20 180 111 0 0 chr15 100279331 100279358 -1101163 + (TG)n Simple_repeat Simple_repeat 1 27 0 407 200 0 8 chr15 100279383 100279508 -1101013 + (TGG)n Simple_repeat Simple_repeat 3 126 0 664 243 1 0 chr15 100279532 100280409 -1100112 + (TGG)n Simple_repeat Simple_repeat 1 878 0 615 189 0 0 chr15 100280421 100280859 -1099662 + (TGG)n Simple_repeat Simple_repeat 1 438 0 1425 175 21 18 chr15 100280983 100281268 -1099253 - AluJb SINE Alu -26 286 1 2655 131 26 0 chr15 100281277 100281698 -1098823 - L1MA8 LINE L1 -352 5939 5508 7293 41 0 0 chr15 100281783 100283219 -1097302 - L1PA6 LINE L1 -5 6149 4702 607 88 0 0 chr15 100283319 100283399 -1097122 + AluSp/q SINE Alu 221 300 -13 317 305 144 35 chr15 100283456 100283712 -1096809 + L2 LINE L2 2921 3204 -109 2014 116 51 0 chr15 100284547 100284823 -1095698 + AluSg SINE Alu 1 290 -20 3619 194 68 46 chr15 100286422 100287538 -1092983 + L1MDa LINE L1 989 2129 -4411 282 106 0 0 chr15 100287898 100287945 -1092576 + (GA)n Simple_repeat Simple_repeat 1 47 0 2519 234 120 4 chr15 100287947 100289035 -1091486 - L1ME LINE L1 -490 5674 4458 1293 196 30 27 chr15 100289185 100289522 -1090999 + L1MA7 LINE L1 5954 6291 0 268 252 57 41 chr15 100289774 100289897 -1090624 + MER104 DNA Tc2 26 150 -30 237 308 31 20 chr15 100290394 100290504 -1090017 - MIR SINE MIR -76 132 34 1986 190 35 37 chr15 100291245 100291418 -1089103 + MLT1C LTR MaLR 5 177 -290 2332 92 0 0 chr15 100291418 100291757 -1088764 + AluY SINE Alu 1 311 0 1986 190 35 37 chr15 100291757 100292046 -1088475 + MLT1C LTR MaLR 177 466 -1 501 265 34 7 chr15 100293117 100293264 -1087257 + MIR SINE MIR 33 183 -79 216 0 0 0 chr15 100293293 100293317 -1087204 + (CA)n Simple_repeat Simple_repeat 1 24 0 354 225 92 52 chr15 100294285 100294458 -1086063 + L1MC5 LINE L1 7268 7447 -514 304 231 152 108 chr15 100294511 100294764 -1085757 + L1MC4 LINE L1 7600 7840 -202 207 0 0 0 chr15 100294764 100294787 -1085734 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1238 233 76 0 chr15 100294790 100295052 -1085469 - AluJo SINE Alu -30 282 1 304 231 152 108 chr15 100295052 100295136 -1085385 + L1MC4 LINE L1 7841 7956 -86 467 121 15 0 chr15 100295409 100295475 -1085046 + AluJ/FLAM SINE Alu 2 68 -244 2187 112 0 3 chr15 100295637 100295923 -1084598 + AluSc SINE Alu 3 287 -22 189 0 0 0 chr15 100295926 100295947 -1084574 + (TA)n Simple_repeat Simple_repeat 1 21 0 417 265 179 24 chr15 100295976 100296411 -1084110 - L2 LINE L2 -2 3270 2696 180 77 0 0 chr15 100296863 100296889 -1083632 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 274 372 31 8 chr15 100296896 100297025 -1083496 - L2 LINE L2 -17 3296 3165 425 115 11 23 chr15 100299787 100299874 -1080647 + L1MA10 LINE L1 6248 6333 -1 1864 141 11 11 chr15 100299874 100300157 -1080364 - AluSq SINE Alu -29 284 2 209 200 0 0 chr15 100300932 100300972 -1079549 + T-rich Low_complexity Low_complexity 5 44 0 193 143 57 0 chr15 100300996 100301031 -1079490 + MER5A DNA MER1_type 1 37 -152 606 217 39 78 chr15 100301059 100301128 -1079393 + MER5A DNA MER1_type 1 71 -118 2005 134 7 26 chr15 100301128 100301433 -1079088 - AluSx SINE Alu -11 301 3 606 217 39 78 chr15 100301433 100301543 -1078978 + MER5A DNA MER1_type 71 173 -16 181 254 32 48 chr15 100301831 100301894 -1078627 + L2 LINE L2 3246 3307 -6 2082 92 7 10 chr15 100302395 100302687 -1077834 - AluSx SINE Alu -21 291 1 796 98 15 0 chr15 100303623 100303756 -1076765 + (CA)n Simple_repeat Simple_repeat 2 136 0 2256 111 0 3 chr15 100304636 100304933 -1075588 - AluSx SINE Alu -15 297 2 2239 106 0 10 chr15 100306259 100306562 -1073959 + AluSx SINE Alu 1 300 -12 2178 122 0 0 chr15 100309375 100309671 -1070850 + AluSx SINE Alu 1 296 -16 1006 184 96 93 chr15 100309972 100310348 -1070173 - MER63 DNA MER1_type -5 1055 679 279 130 0 0 chr15 100311419 100311473 -1069048 + (T)n Simple_repeat Simple_repeat 1 54 0 11194 26 25 81 chr15 100311474 100312941 -1067580 - SVA Other Other -2 1384 1 1765 93 0 62 chr15 100313049 100313306 -1067215 - AluSq SINE Alu -70 243 3 550 217 31 8 chr15 100313309 100313438 -1067083 - MIR SINE MIR -51 211 80 1399 233 0 0 chr15 100313484 100313771 -1066750 + AluJo SINE Alu 9 295 -17 2290 97 0 3 chr15 100314009 100314309 -1066212 + AluSg SINE Alu 1 299 -11 2829 209 22 2 chr15 100314403 100314990 -1065531 - L1MB7 LINE L1 -1 6183 5585 611 256 25 6 chr15 100317361 100317521 -1063000 + L1MA10 LINE L1 6171 6333 -1 244 271 0 0 chr15 100318290 100318444 -1062077 + C-rich Low_complexity Low_complexity 1 154 0 219 253 0 0 chr15 100318519 100318614 -1061907 + C-rich Low_complexity Low_complexity 1 95 0 438 237 0 0 chr15 100318631 100318770 -1061751 + C-rich Low_complexity Low_complexity 1 139 0 360 276 0 0 chr15 100318799 100319041 -1061480 + C-rich Low_complexity Low_complexity 1 242 0 219 155 17 35 chr15 100319359 100319417 -1061104 + GA-rich Low_complexity Low_complexity 4 60 0 1282 102 6 0 chr15 100319537 100319704 -1060817 - AluSq SINE Alu -14 299 132 204 346 9 19 chr15 100319713 100319820 -1060701 - MER5A DNA MER1_type -44 145 40 517 223 58 0 chr15 100320157 100320260 -1060261 + MIR SINE MIR 79 187 -75 315 265 71 31 chr15 100321863 100321961 -1058560 - MER91C DNA MER1_type -35 105 4 196 347 42 0 chr15 100322099 100322194 -1058327 + MIR SINE MIR 102 200 -62 2166 146 125 10 chr15 100322240 100322624 -1057897 + MSTA LTR MaLR 1 428 0 197 269 102 37 chr15 100323145 100323253 -1057268 - L2 LINE L2 0 3272 3158 443 200 60 0 chr15 100324055 100324155 -1056366 - MER5A DNA MER1_type 0 189 84 861 158 115 24 chr15 100324167 100324354 -1056167 - AluSg/x SINE Alu 0 310 129 2028 171 5 14 chr15 100324358 100324727 -1055794 - L1MA7 LINE L1 0 6291 5926 2180 96 48 0 chr15 100324727 100325020 -1055501 - AluSc SINE Alu -2 307 1 342 225 28 0 chr15 100325023 100325094 -1055427 - MER5A DNA MER1_type -114 75 3 577 268 14 0 chr15 100325094 100325236 -1055285 - Charlie8 DNA MER1_type -2182 235 92 423 123 29 181 chr15 100327402 100327540 -1052981 - Charlie1 DNA MER1_type -213 2548 2432 798 258 36 8 chr15 100327651 100327899 -1052622 + MER20B DNA MER1_type 246 500 -283 1387 169 116 0 chr15 100327964 100328248 -1052273 - L1MD1 LINE L1 0 6522 6206 750 156 188 19 chr15 100328249 100328403 -1052118 + FRAM SINE Alu 1 176 0 4353 235 52 16 chr15 100328429 100330418 -1050103 - L1MD1 LINE L1 -384 6138 4079 2779 264 31 15 chr15 100330424 100331449 -1049072 - L1MD1 LINE L1 -2471 3955 2914 3034 256 23 20 chr15 100331563 100332661 -1047860 - L1M4 LINE L1 -2929 3217 2117 * 3367 134 113 12 chr15 100332646 100333645 -1046876 - L1MD1 LINE L1 -3970 2456 1266 963 84 7 7 chr15 100333655 100333798 -1046723 - L1MD1 LINE L1 -5325 1101 959 7521 196 60 18 chr15 100333806 100334321 -1046200 - L1MDa LINE L1 -3947 2593 2101 2045 139 3 0 chr15 100334321 100334622 -1045899 - AluSx SINE Alu -10 302 1 7521 196 60 18 chr15 100334622 100336375 -1044146 - L1MDa LINE L1 -4439 2101 5 2288 135 85 49 chr15 100336389 100336944 -1043577 - MER4A LTR ERV1 -31 434 1 1352 105 5 0 chr15 100337010 100337201 -1043320 - L1PA14 LINE L1 0 6161 5970 5117 133 17 3 chr15 100337336 100338862 -1041659 - L1PA14 LINE L1 -195 5966 4423 298 167 0 0 chr15 100338885 100338933 -1041588 - MLT2C1 LTR ERVL 0 397 350 336 234 18 27 chr15 100338933 100339080 -1041441 + (TA)n Simple_repeat Simple_repeat 1 171 -14 185 0 40 0 chr15 100339080 100339105 -1041416 + (TG)n Simple_repeat Simple_repeat 1 26 0 336 234 18 27 chr15 100339105 100339120 -1041401 + (TA)n Simple_repeat Simple_repeat 171 185 0 2230 142 4 69 chr15 100339153 100339429 -1041092 - MLT2D LTR ERVL -34 486 140 2101 132 0 0 chr15 100339429 100339718 -1040803 - AluSq SINE Alu -18 295 7 2230 142 4 69 chr15 100339718 100339850 -1040671 - MLT2D LTR ERVL -380 140 1 448 231 75 21 chr15 100339850 100340033 -1040488 + MER20B DNA MER1_type 587 779 -4 1392 88 0 5 chr15 100340857 100341050 -1039471 + L1PB1 LINE L1 5958 6149 -2 27 0 0 0 chr15 100341050 100341077 -1039444 + AT_rich Low_complexity Low_complexity 1 27 0 3009 197 63 119 chr15 100341656 100343133 -1037388 - L1MC5 LINE L1 -20 7941 6535 942 269 147 23 chr15 100343501 100344058 -1036463 - L1MC5 LINE L1 -1911 5897 5272 836 318 45 32 chr15 100344117 100344992 -1035529 - L1MC5 LINE L1 -977 5169 4280 2299 106 0 16 chr15 100345644 100345956 -1034565 - AluSx SINE Alu -5 307 1 1786 135 3 43 chr15 100345977 100346281 -1034240 - AluSx SINE Alu -20 292 1 531 315 0 38 chr15 100347928 100348112 -1032409 + MER91B DNA MER1_type 1 177 -13 528 217 21 122 chr15 100348333 100348669 -1031852 - MER33 DNA MER1_type -2 322 21 206 297 0 16 chr15 100349677 100349741 -1030780 + GA-rich Low_complexity Low_complexity 1 63 0 942 263 76 11 chr15 100350205 100350586 -1029935 + L1M4 LINE L1 4420 4825 -1321 808 240 87 9 chr15 100352156 100352385 -1028136 + MLT1K LTR MaLR 321 567 -21 402 195 18 9 chr15 100354842 100354955 -1025566 + CT-rich Low_complexity Low_complexity 1 114 0 252 201 16 95 chr15 100355394 100355583 -1024938 + (TGG)n Simple_repeat Simple_repeat 2 175 0 1899 67 0 13 chr15 100356714 100356952 -1023569 - AluY SINE Alu -76 235 1 1941 184 60 46 chr15 100356953 100357504 -1023017 + L1MDa LINE L1 2122 2677 -3863 659 210 72 43 chr15 100358005 100358096 -1022425 + L1MC5 LINE L1 7634 7721 -240 198 0 0 0 chr15 100358096 100358118 -1022403 + (TA)n Simple_repeat Simple_repeat 2 23 0 659 210 72 43 chr15 100358118 100358175 -1022346 + L1MC5 LINE L1 7721 7775 -186 186 71 0 0 chr15 100358175 100358203 -1022318 + (TG)n Simple_repeat Simple_repeat 1 28 0 659 210 72 43 chr15 100358203 100358329 -1022192 + L1MC5 LINE L1 7775 7917 -44 3384 216 48 31 chr15 100360554 100360877 -1019644 - L1ME1 LINE L1 -17 6543 6227 2095 139 3 3 chr15 100360877 100361187 -1019334 + AluSx SINE Alu 1 310 -2 3384 216 48 31 chr15 100361187 100361743 -1018778 - L1ME1 LINE L1 -333 6227 5649 2058 133 14 3 chr15 100361753 100362047 -1018474 - MER1B DNA MER1_type 0 339 43 2460 239 35 19 chr15 100362047 100362767 -1017754 - L1ME1 LINE L1 -1119 5421 4691 679 190 13 32 chr15 100362767 100362925 -1017596 + MER4C LTR ERV1 1 155 -310 961 161 81 143 chr15 100363034 100363369 -1017152 + MER4C LTR ERV1 149 462 -3 1332 224 42 21 chr15 100363395 100363778 -1016743 - L1ME1 LINE L1 -1872 4668 4278 1176 201 61 64 chr15 100363821 100364075 -1016446 + MLT2C2 LTR ERVL 82 336 -128 4564 159 51 3 chr15 100364075 100364822 -1015699 - LTR39 LTR ERV1 0 783 1 1176 201 61 64 chr15 100364822 100364911 -1015610 + MLT2C2 LTR ERVL 336 424 -40 25455 186 29 25 chr15 100364940 100367585 -1012936 + ERVL LTR ERVL 172 2804 -2960 2506 77 0 0 chr15 100367585 100367884 -1012637 + AluY SINE Alu 1 299 -12 25455 186 29 25 chr15 100367884 100370531 -1009990 + ERVL LTR ERVL 2804 5535 -229 4331 211 23 26 chr15 100370531 100372052 -1008469 - MER52A LTR ERV1 0 1755 8 757 186 23 0 chr15 100372072 100372201 -1008320 + ERVL LTR ERVL 5528 5659 -105 316 194 15 30 chr15 100372202 100372269 -1008252 + Ricksha DNA DNA 305 370 -884 919 241 38 45 chr15 100372269 100372559 -1007962 + MLT2D LTR ERVL 79 366 -48 235 159 63 0 chr15 100372559 100372622 -1007899 + CT-rich Low_complexity Low_complexity 1 67 0 229 185 56 0 chr15 100372622 100372676 -1007845 + MLT2D LTR ERVL 408 464 0 4827 236 30 20 chr15 100372677 100374107 -1006414 - L1ME1 LINE L1 -2273 4267 2823 286 202 12 12 chr15 100375742 100375826 -1004695 + GA-rich Low_complexity Low_complexity 1 84 0 649 274 152 29 chr15 100375962 100376556 -1003965 - L1M4 LINE L1 -2782 3364 2698 1023 212 53 35 chr15 100376784 100377123 -1003398 - L1M4 LINE L1 -776 5370 5026 2239 99 0 10 chr15 100377137 100377431 -1003090 - AluSc SINE Alu -18 291 1 4058 255 75 21 chr15 100377705 100379288 -1001233 - L1M4 LINE L1 -2325 3821 2155 1783 205 90 75 chr15 100379289 100379835 -1000686 + MLT2B3 LTR ERVL 1 554 0 7589 113 12 42 chr15 100379839 100381020 -999501 + THE1-int LTR MaLR 6 1151 -429 1351 268 123 16 chr15 100381020 100381771 -998750 - L1ME1 LINE L1 -4141 2399 1569 4356 182 33 24 chr15 100381825 100382342 -998179 - L1MB3 LINE L1 -54 6129 5618 2309 104 0 3 chr15 100382342 100382640 -997881 - AluSq SINE Alu -16 297 1 4356 182 33 24 chr15 100382640 100383187 -997334 - L1MB3 LINE L1 -565 5618 5047 2005 60 8 0 chr15 100383201 100383449 -997072 - AluY SINE Alu -61 250 1 2477 151 65 17 chr15 100383449 100383895 -996626 - L1MB3 LINE L1 -45 6138 5670 206 282 42 14 chr15 100384197 100384268 -996253 - MIR SINE MIR -113 149 77 209 286 52 26 chr15 100384493 100384570 -995951 + MIR SINE MIR 108 186 -76 2524 43 0 0 chr15 100384659 100384960 -995561 - AluY SINE Alu -10 301 1 422 271 105 22 chr15 100386157 100386338 -994183 + MER91A DNA MER1_type 1 196 0 237 333 9 9 chr15 100386750 100386861 -993660 - MIR SINE MIR -117 145 35 306 361 51 13 chr15 100387296 100387454 -993067 - MER5B DNA MER1_type -10 168 5 2046 199 26 3 chr15 100387717 100388098 -992423 - MLT1B LTR MaLR 0 390 1 797 177 0 3 chr15 100388170 100388566 -991955 + (CA)n Simple_repeat Simple_repeat 1 394 0 240 275 58 25 chr15 100388813 100388933 -991588 + MIR SINE MIR 6 129 -133 346 303 46 50 chr15 100389759 100390060 -990461 - L1ME LINE L1 -245 5919 5627 288 392 0 13 chr15 100391049 100391202 -989319 - MIR SINE MIR -77 185 35 988 186 116 133 chr15 100391273 100391417 -989104 + MER34B LTR ERV1 1 146 -419 1949 139 0 10 chr15 100391417 100391719 -988802 - AluSg SINE Alu -11 299 1 988 186 116 133 chr15 100391719 100391927 -988594 + MER34B LTR ERV1 146 342 -223 2147 103 0 0 chr15 100391927 100392217 -988304 - AluSg SINE Alu -14 296 7 988 186 116 133 chr15 100392217 100392434 -988087 + MER34B LTR ERV1 342 561 -4 306 312 130 13 chr15 100392803 100392957 -987564 + MIR SINE MIR 18 189 -73 221 288 15 0 chr15 100393024 100393090 -987431 + MIR SINE MIR 79 145 -63 221 348 102 17 chr15 100393100 100393218 -987303 + MIR SINE MIR 115 242 -20 267 317 29 19 chr15 100393617 100393721 -986800 - MIR SINE MIR -61 147 43 838 253 78 83 chr15 100394720 100395062 -985459 + MLT1J2 LTR MaLR 45 387 -63 1509 190 44 47 chr15 100395062 100395156 -985365 + MER58B DNA MER1_type 1 94 -2326 182 33 67 0 chr15 100395156 100395186 -985335 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2217 87 0 0 chr15 100395188 100395476 -985045 - AluSg SINE Alu -22 288 1 1509 190 44 47 chr15 100395476 100395720 -984801 + MER58B DNA MER1_type 95 341 0 838 253 78 83 chr15 100395720 100395785 -984736 + MLT1J2 LTR MaLR 387 450 0 2220 108 0 0 chr15 100395805 100396100 -984421 - AluSx SINE Alu -17 295 1 320 309 24 16 chr15 100396103 100396229 -984292 - L1ME LINE L1 -509 5612 5486 259 346 12 0 chr15 100396981 100397062 -983459 - MER63 DNA MER1_type -2 1059 978 585 161 85 25 chr15 100397063 100397181 -983340 - MER63 DNA MER1_type -311 751 1 400 219 0 12 chr15 100397314 100397396 -983125 - MIR SINE MIR -143 119 39 332 338 61 35 chr15 100397551 100397782 -982739 + MARNA DNA Mariner 295 531 -55 324 0 0 0 chr15 100398988 100399024 -981497 + (CA)n Simple_repeat Simple_repeat 1 36 0 197 269 275 43 chr15 100399189 100399837 -980684 + L2 LINE L2 219 1016 -2298 201 364 96 35 chr15 100400626 100400887 -979634 + L2 LINE L2 1059 1335 -1979 828 319 126 23 chr15 100401060 100401753 -978768 + L2 LINE L2 1611 2374 -940 472 267 99 43 chr15 100402283 100402444 -978077 + MLT1K LTR MaLR 419 588 0 240 111 0 0 chr15 100402448 100402484 -978037 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 212 333 0 0 chr15 100403091 100403148 -977373 - MIR SINE MIR -103 105 49 310 274 62 18 chr15 100403337 100403450 -977071 - MER5C DNA MER1_type -200 124 7 227 149 0 21 chr15 100403858 100403905 -976616 - L2 LINE L2 0 3272 3227 344 336 157 5 chr15 100404461 100404678 -975843 + MIR SINE MIR 13 262 0 2107 99 3 0 chr15 100406716 100407008 -973513 + AluSc SINE Alu 1 293 -16 317 256 0 0 chr15 100408534 100408616 -971905 + (TGG)n Simple_repeat Simple_repeat 2 83 0 322 269 77 8 chr15 100408855 100408985 -971536 + L2 LINE L2 2213 2351 -963 318 328 92 16 chr15 100412569 100412886 -967635 - L1M4 LINE L1 -1331 4815 4475 535 313 56 36 chr15 100413133 100413417 -967104 - L1M4 LINE L1 -1958 4188 3888 2417 81 0 0 chr15 100413417 100413726 -966795 - AluY SINE Alu 0 311 3 535 313 56 36 chr15 100413726 100413939 -966582 - L1M4 LINE L1 -2258 3888 3681 26 82 0 0 chr15 100413950 100414011 -966510 + AT_rich Low_complexity Low_complexity 1 61 0 1440 78 4 118 chr15 100464080 100464208 -916313 - L1PA10 LINE L1 -265 5903 5815 2201 114 0 3 chr15 100464208 100464514 -916007 - AluSq SINE Alu 0 313 9 1440 78 4 118 chr15 100464514 100464630 -915891 - L1PA10 LINE L1 -353 5815 5687 * 2512 193 53 72 chr15 100464629 100465327 -915194 - L1M4 LINE L1 -1148 4998 4314 2326 115 0 0 chr15 100465384 100465696 -914825 + AluSx SINE Alu 1 312 0 257 263 30 61 chr15 100465746 100465845 -914676 + MIR3 SINE MIR 5 100 -108 1530 137 37 29 chr15 100465885 100466294 -914227 - L1MA4A LINE L1 0 6303 5831 2282 102 0 0 chr15 100466300 100466595 -913926 - AluSx SINE Alu -17 295 1 261 0 0 0 chr15 100466668 100466697 -913824 + (GA)n Simple_repeat Simple_repeat 1 29 0 2835 161 25 40 chr15 100467430 100467937 -912584 - L1M4 LINE L1 -352 5822 5323 2411 55 0 0 chr15 100467937 100468227 -912294 - AluY SINE Alu -21 290 1 2835 161 25 40 chr15 100468227 100468526 -911995 - L1M4 LINE L1 -851 5323 5021 * 7688 216 36 12 chr15 100468521 100470424 -910097 - L1M4 LINE L1 -1463 4683 2736 270 0 0 0 chr15 100470616 100470646 -909875 + (TA)n Simple_repeat Simple_repeat 2 31 0 2356 97 3 0 chr15 100470646 100470944 -909577 - AluSp SINE Alu -14 299 1 201 195 0 0 chr15 100472603 100472644 -907877 + (CA)n Simple_repeat Simple_repeat 2 42 0 325 104 0 0 chr15 100474059 100474107 -906414 - L1M4 LINE L1 -977 5169 5122 912 141 0 0 chr15 100474673 100475159 -905362 + (TG)n Simple_repeat Simple_repeat 2 665 0 261 192 115 26 chr15 100476953 100477031 -903490 + MIR SINE MIR 89 173 -89 2071 108 0 0 chr15 100477366 100477634 -902887 - AluSq SINE Alu -45 268 1 915 314 111 30 chr15 100478528 100479140 -901381 - L1MC4a LINE L1 -1814 5994 5326 2360 100 10 0 chr15 100479140 100479449 -901072 - AluSx SINE Alu 0 312 1 915 314 111 30 chr15 100479449 100479476 -901045 - L1MC4a LINE L1 -2482 5326 5303 333 215 92 52 chr15 100479673 100479924 -900597 + L1MC4a LINE L1 4400 4660 -1486 241 308 22 0 chr15 100480234 100480325 -900196 - L1MC/D LINE L1 -2012 5796 5704 2093 105 40 3 chr15 100480615 100480911 -899610 - AluSc SINE Alu 0 309 3 254 270 36 22 chr15 100480959 100481096 -899425 + L1MC4a LINE L1 5344 5482 -2326 432 298 208 15 chr15 100481207 100481539 -898982 + L1MC4a LINE L1 5562 5957 -1851 358 321 31 36 chr15 100483458 100483654 -896867 - L1MC5 LINE L1 -48 7913 7719 2499 206 122 25 chr15 100483689 100484416 -896105 - L1ME2 LINE L1 -10 6154 5357 624 152 24 19 chr15 100484421 100484632 -895889 + CT-rich Low_complexity Low_complexity 1 212 0 1824 144 7 20 chr15 100484635 100484933 -895588 - AluJo SINE Alu -18 294 1 1169 219 32 20 chr15 100484933 100485275 -895246 - L1ME2 LINE L1 -818 5328 4983 2636 99 20 10 chr15 100485275 100485669 -894852 - L1PA11 LINE L1 0 6174 5777 2374 112 0 0 chr15 100485669 100485982 -894539 - AluSq SINE Alu 0 313 1 360 0 0 0 chr15 100486082 100486122 -894399 + (TG)n Simple_repeat Simple_repeat 2 41 0 1616 213 40 11 chr15 100486122 100486470 -894051 - MER65C LTR ERV1 -103 358 1 180 0 0 0 chr15 100486636 100486656 -893865 + (CA)n Simple_repeat Simple_repeat 2 21 0 489 277 87 55 chr15 100487989 100488447 -892074 - L1ME4a LINE L1 -5 6116 5644 2167 109 7 3 chr15 100489481 100489807 -890714 + AluSq SINE Alu 1 327 0 1721 166 49 9 chr15 100489818 100490162 -890359 + L1MB7 LINE L1 5825 6182 -2 322 292 14 7 chr15 100490249 100490393 -890128 - L1ME4a LINE L1 -1092 5054 4910 14632 184 25 26 chr15 100490784 100491318 -889203 - L1MA9 LINE L1 -2 7012 6479 327 104 0 0 chr15 100491318 100491366 -889155 + (TA)n Simple_repeat Simple_repeat 1 48 0 14632 184 25 26 chr15 100491366 100491702 -888819 - L1MA9 LINE L1 -535 6479 6144 183 42 0 0 chr15 100491702 100491726 -888795 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 14632 184 25 26 chr15 100491726 100491740 -888781 - L1MA9 LINE L1 -870 6144 6131 2166 109 0 0 chr15 100491740 100492023 -888498 - AluSg SINE Alu -27 283 1 14632 184 25 26 chr15 100492023 100494256 -886265 - L1MA9 LINE L1 -883 6131 3896 2214 114 0 32 chr15 100494256 100494572 -885949 - AluSg1 SINE Alu -3 306 1 14632 184 25 26 chr15 100494572 100495692 -884829 - L1MA9 LINE L1 -3118 3896 2791 2007 110 37 0 chr15 100495692 100495965 -884556 - AluSx SINE Alu -29 283 1 14632 184 25 26 chr15 100495965 100496039 -884482 - L1MA9 LINE L1 -4223 2791 2718 355 289 9 9 chr15 100496464 100496578 -883943 - MIR SINE MIR 0 262 149 238 180 180 0 chr15 100498509 100498570 -881951 + L2 LINE L2 3240 3311 -2 1623 174 23 20 chr15 100498800 100499176 -881345 - MSTC LTR MaLR 0 428 1 2463 68 7 0 chr15 100499182 100499476 -881045 + AluSc SINE Alu 1 296 -13 191 306 141 24 chr15 100499509 100499715 -880806 + MIR SINE MIR 21 250 -12 1402 195 64 0 chr15 100500079 100500346 -880175 + MSTD LTR MaLR 113 396 0 2740 138 0 0 chr15 100501220 100501632 -878889 + L1PA15 LINE L1 5754 6165 0 393 307 15 0 chr15 100501973 100502110 -878411 + MIR SINE MIR 82 220 -42 21 89 0 0 chr15 100502167 100502223 -878298 + AT_rich Low_complexity Low_complexity 1 56 0 373 270 12 80 chr15 100502789 100502858 -877663 - MIR SINE MIR -97 165 93 2954 91 96 0 chr15 100502858 100503276 -877245 + LTR22A LTR ERVK 1 458 0 373 270 12 80 chr15 100503276 100503369 -877152 - MIR SINE MIR -169 93 14 1741 175 7 23 chr15 100503543 100503852 -876669 - AluJo SINE Alu -8 304 1 195 300 11 33 chr15 100504125 100504215 -876306 + L2 LINE L2 2965 3052 -220 680 261 17 6 chr15 100504699 100504875 -875646 - MER45A DNA AcHobo 0 178 1 2403 180 66 19 chr15 100505051 100505264 -875257 + L1MC2 LINE L1 5770 5971 -373 216 0 0 0 chr15 100505264 100505288 -875233 + (GGGA)n Simple_repeat Simple_repeat 1 24 0 2403 180 66 19 chr15 100505288 100505602 -874919 + L1MC2 LINE L1 5971 6322 -22 284 163 23 81 chr15 100505744 100505830 -874691 + L1MC2 LINE L1 6264 6344 0 775 171 56 121 chr15 100506343 100506575 -873946 + MER33 DNA MER1_type 2 209 -2376 1482 157 12 12 chr15 100506575 100506824 -873697 - AluJb SINE Alu -9 303 55 775 171 56 121 chr15 100506824 100506913 -873608 + MER33 DNA MER1_type 209 302 -22 270 232 14 14 chr15 100507272 100507341 -873180 - MIR SINE MIR -125 137 69 320 348 100 29 chr15 100507953 100508163 -872358 - MIR SINE MIR -10 252 28 701 250 87 32 chr15 100508823 100509075 -871446 - L1ME3A LINE L1 -25 6145 5880 * 3947 207 87 21 chr15 100509057 100510206 -870315 - L1MD2 LINE L1 0 6753 5517 3082 234 27 63 chr15 100510220 100511247 -869274 - L1MD2 LINE L1 -1901 4639 3650 * 5319 216 137 37 chr15 100511229 100512852 -867669 - L1MD2 LINE L1 -4746 1794 10 747 314 24 51 chr15 100512842 100513432 -867089 - L1MC4a LINE L1 -1927 5881 5308 * 1041 280 95 11 chr15 100513418 100513978 -866543 - L1MC4a LINE L1 -2451 3695 3089 480 307 45 21 chr15 100514758 100515048 -865473 - L1ME3A LINE L1 -2258 5550 5254 526 329 78 40 chr15 100515060 100515614 -864907 - L1ME3A LINE L1 -895 5251 4677 486 306 111 23 chr15 100515937 100516543 -863978 - L1 LINE L1 -1910 4236 3579 383 337 55 37 chr15 100516653 100516963 -863558 - L1 LINE L1 -2730 3416 3098 2142 125 26 0 chr15 100516963 100517266 -863255 - AluSq SINE Alu -2 311 1 383 337 55 37 chr15 100517266 100517281 -863240 - L1 LINE L1 -3048 3098 3085 322 292 100 15 chr15 100517379 100517509 -863012 + MIR SINE MIR 112 252 -10 242 282 0 0 chr15 100517633 100517711 -862810 + (TA)n Simple_repeat Simple_repeat 2 79 0 355 203 268 32 chr15 100518202 100518325 -862196 + MIR SINE MIR 107 258 -4 287 306 82 30 chr15 100518386 100518520 -862001 - MIR SINE MIR -33 229 89 709 206 26 0 chr15 100518609 100518764 -861757 + MER5B DNA MER1_type 20 178 0 212 256 13 0 chr15 100521352 100521430 -859091 + (TA)n Simple_repeat Simple_repeat 2 80 0 274 286 44 41 chr15 100521776 100522038 -858483 + L1MC4 LINE L1 5334 5595 -2213 2163 109 10 10 chr15 100522205 100522507 -858014 + AluSx SINE Alu 2 303 -9 705 208 3 0 chr15 100522931 100523235 -857286 + (TGGA)n Simple_repeat Simple_repeat 1 305 0 1589 219 65 32 chr15 100524751 100525194 -855327 - MLT1C LTR MaLR -9 458 1 2041 144 10 3 chr15 100527033 100527338 -853183 - AluSx SINE Alu -5 307 1 2248 100 34 74 chr15 100527725 100528104 -852417 - THE1B LTR MaLR 0 364 1 192 308 15 0 chr15 100529639 100529704 -850817 - MIR3 SINE MIR -17 191 126 2775 250 63 81 chr15 100529824 100531182 -849339 + L1MC4 LINE L1 6709 8042 0 1920 225 44 29 chr15 100531791 100532186 -848335 - MER89 LTR ERV1 -1 558 151 2108 82 48 20 chr15 100532186 100532479 -848042 + AluSx SINE Alu 12 312 0 1920 225 44 29 chr15 100532479 100532630 -847891 - MER89 LTR ERV1 -408 151 4 206 308 15 0 chr15 100533519 100533584 -846937 - MIR SINE MIR -62 146 81 2170 111 3 0 chr15 100533887 100534193 -846328 - AluSg SINE Alu -3 307 1 2021 111 0 29 chr15 100535494 100535800 -844721 + AluSc SINE Alu 1 297 -12 255 61 0 0 chr15 100535892 100535925 -844596 + (TG)n Simple_repeat Simple_repeat 2 34 0 746 246 0 12 chr15 100537776 100537943 -842578 + FRAM SINE Alu 2 166 0 1913 161 52 11 chr15 100538820 100539187 -841334 - MLT1B LTR MaLR -6 384 3 329 294 73 0 chr15 100539974 100540083 -840438 - MIR SINE MIR -29 233 117 578 254 90 6 chr15 100540102 100540279 -840242 - MLT1B LTR MaLR -16 374 158 1372 82 0 0 chr15 100540293 100540477 -840044 - AluSx SINE Alu -8 302 119 388 210 40 12 chr15 100540489 100540593 -839928 - MLT1A2 LTR MaLR -204 186 69 917 62 0 0 chr15 100540681 100540793 -839728 - AluSx SINE Alu -200 112 1 817 180 18 54 chr15 100540794 100540961 -839560 - MLT1A2 LTR MaLR -213 161 1 2199 121 24 24 chr15 100541742 100542080 -838441 + MER1B DNA MER1_type 1 338 -1 373 246 34 77 chr15 100542329 100542621 -837900 + L1M4 LINE L1 5139 5421 -747 374 306 137 39 chr15 100544634 100544677 -835844 - L1MC4a LINE L1 -1878 5930 5893 2152 106 3 3 chr15 100544677 100544979 -835542 - AluSg SINE Alu -7 303 2 374 306 137 39 chr15 100544979 100545294 -835227 - L1MC4a LINE L1 -1915 5893 5537 393 22 0 0 chr15 100546075 100546121 -834400 + (TG)n Simple_repeat Simple_repeat 2 47 0 403 176 245 0 chr15 100547109 100547211 -833310 - AluJb SINE Alu 0 312 186 384 262 0 119 chr15 100547248 100547374 -833147 - MER5B DNA MER1_type 0 178 68 738 55 11 0 chr15 100547552 100547643 -832878 + AluSc SINE Alu 196 287 -22 2303 171 40 0 chr15 100549738 100550142 -830379 - MSTB LTR MaLR -6 420 1 207 326 98 22 chr15 100550945 100551037 -829484 - MIR SINE MIR -71 191 93 192 288 203 34 chr15 100551318 100551436 -829085 + MIR SINE MIR 111 248 -14 233 283 0 0 chr15 100552210 100552270 -828251 + CT-rich Low_complexity Low_complexity 3 62 0 211 310 88 26 chr15 100552286 100552399 -828122 - L2 LINE L2 -27 3245 3126 3123 224 35 3 chr15 100552402 100553035 -827486 + MER82 DNA MER2_type 1 653 0 2031 134 0 0 chr15 100553893 100554199 -826322 + AluSx SINE Alu 1 306 -6 2126 128 23 3 chr15 100555081 100555424 -825097 - L1PB1 LINE L1 -8 6143 5794 3409 220 70 17 chr15 100555427 100556046 -824475 - L1ME2 LINE L1 -13 6151 5566 2300 71 3 0 chr15 100556046 100556340 -824181 - AluY SINE Alu -16 295 1 3409 220 70 17 chr15 100556340 100556595 -823926 - L1ME2 LINE L1 -598 5566 5326 1190 39 59 0 chr15 100556595 100556748 -823773 - L1PA4 LINE L1 0 6155 5994 3409 220 70 17 chr15 100556748 100557234 -823287 - L1ME2 LINE L1 -838 5326 4717 958 231 98 0 chr15 100557239 100557442 -823079 - MLT1D LTR MaLR 0 505 283 6397 135 25 2 chr15 100557445 100559076 -821445 - L1MA4A LINE L1 -3 7002 5341 1301 199 15 40 chr15 100559065 100559466 -821055 - L1MA4A LINE L1 -2663 4185 3795 * 10858 179 76 17 chr15 100559440 100561991 -818530 - L1MA4A LINE L1 -3467 3381 679 270 211 18 0 chr15 100562062 100562119 -818402 - L1MA4A LINE L1 -6366 483 426 * 3083 87 9 5 chr15 100562116 100562551 -817970 + L1PB1 LINE L1 5581 6017 -134 875 171 59 27 chr15 100562700 100562922 -817599 + L1PB1 LINE L1 5922 6150 -1 2188 184 57 7 chr15 100562935 100563353 -817168 - L1MA4A LINE L1 -6409 440 2 840 209 38 19 chr15 100563389 100563600 -816921 - MLT1D LTR MaLR -290 215 1 4825 252 84 30 chr15 100563601 100566246 -814275 - L1MEc LINE L1 -1431 4784 1863 1176 185 108 35 chr15 100566246 100566560 -813961 - MER44D DNA MER2_type 0 609 3 4825 252 84 30 chr15 100566560 100566902 -813619 - L1MEc LINE L1 -4352 1863 1541 200 0 48 48 chr15 100568218 100568260 -812261 + (TAAAA)n Simple_repeat Simple_repeat 5 46 0 691 275 81 57 chr15 100568264 100568649 -811872 - MLT1J1 LTR MaLR 0 446 53 234 236 0 18 chr15 100568677 100568732 -811789 + MER94 DNA DNA 1 54 -80 3091 214 185 34 chr15 100569083 100570595 -809926 - L1M4c LINE L1 -3621 3023 1299 3957 202 66 62 chr15 100570621 100571742 -808779 - L1M4c LINE L1 -5416 1126 1 282 257 64 37 chr15 100571901 100572010 -808511 - L2 LINE L2 0 3313 3202 520 287 14 21 chr15 100572213 100572356 -808165 + MIR SINE MIR 62 203 -59 2179 142 101 0 chr15 100572878 100573266 -807255 - MSTA LTR MaLR -1 427 1 1260 175 47 0 chr15 100573336 100573570 -806951 + AluJb SINE Alu 9 253 -59 185 331 174 16 chr15 100574040 100574161 -806360 - MER5A DNA MER1_type -22 167 28 * 265 341 0 12 chr15 100574090 100574172 -806349 + MER5A DNA MER1_type 105 185 -4 1991 173 18 0 chr15 100574451 100574793 -805728 - MER7A DNA MER2_type 0 346 1 1981 98 21 3 chr15 100575395 100575680 -804841 + AluSq SINE Alu 1 290 -23 423 212 51 25 chr15 100575707 100575825 -804696 + MLT1F1 LTR MaLR 1 121 -446 2125 224 71 6 chr15 100575832 100576351 -804170 + L1MD3 LINE L1 7432 7984 -11 1394 163 62 4 chr15 100577216 100577474 -803047 - AluSx SINE Alu -39 273 1 376 277 162 60 chr15 100577491 100578221 -802300 - L2 LINE L2 -15 3298 2507 493 207 197 21 chr15 100578299 100578487 -802034 - L2 LINE L2 -1050 2264 2044 1923 113 46 0 chr15 100578632 100578916 -801605 + AluSp SINE Alu 1 297 -16 214 355 21 21 chr15 100579602 100579695 -800826 - MIR SINE MIR -153 109 17 569 175 183 0 chr15 100579922 100580059 -800462 - FRAM SINE Alu -21 155 1 1718 77 4 73 chr15 100580098 100580372 -800149 - AluSx SINE Alu -57 255 1 10722 163 63 24 chr15 100580408 100582510 -798011 - L1MC3 LINE L1 -176 7609 5427 1941 133 0 0 chr15 100582950 100583235 -797286 - AluSx SINE Alu -27 285 1 2145 129 21 12 chr15 100583472 100583812 -796709 - MSTA LTR MaLR -11 417 75 284 116 0 0 chr15 100583811 100583854 -796667 - MSTA LTR MaLR -310 118 76 * 289 114 0 0 chr15 100583854 100583898 -796623 - MSTA LTR MaLR -310 118 75 289 114 0 0 chr15 100583897 100583941 -796580 - MSTA LTR MaLR -310 118 75 289 114 0 0 chr15 100583940 100583984 -796537 - MSTA LTR MaLR -310 118 75 289 114 0 0 chr15 100583983 100584027 -796494 - MSTA LTR MaLR -310 118 75 * 666 157 26 0 chr15 100584026 100584141 -796380 - MSTA LTR MaLR -310 118 1 369 284 15 60 chr15 100585159 100585293 -795228 - L1MEc LINE L1 -4114 2282 2155 329 333 95 39 chr15 100585502 100585733 -794788 - L1MEc LINE L1 -4572 1824 1581 2655 223 98 21 chr15 100585934 100586697 -793824 - L1ME2 LINE L1 -21 6126 5305 451 265 63 95 chr15 100586748 100587350 -793171 - L1ME2 LINE L1 -4752 1558 959 2066 118 0 0 chr15 100587350 100587646 -792875 - AluSx SINE Alu -16 296 1 451 265 63 95 chr15 100587646 100587802 -792719 - L1ME2 LINE L1 -5351 959 800 2893 234 82 39 chr15 100589308 100589959 -790562 - L1MC4 LINE L1 -262 7627 6829 2162 108 0 0 chr15 100589959 100590256 -790265 - AluSx SINE Alu -15 297 1 2893 234 82 39 chr15 100590256 100590652 -789869 - L1MC4 LINE L1 -1060 6829 6452 223 143 20 20 chr15 100591611 100591660 -788861 + T-rich Low_complexity Low_complexity 3 51 0 2327 64 0 3 chr15 100592719 100593017 -787504 - AluY SINE Alu -14 297 1 1737 167 0 4 chr15 100593784 100594065 -786456 - AluSx SINE Alu -32 280 1 2484 195 145 52 chr15 100594102 100594215 -786306 - L1MC4 LINE L1 0 8042 7941 2100 98 0 3 chr15 100594215 100594539 -785982 - AluSq SINE Alu 0 323 1 2484 195 145 52 chr15 100594539 100595230 -785291 - L1MC4 LINE L1 -101 7941 7162 207 289 109 16 chr15 100598208 100598336 -782185 - MIR3 SINE MIR -27 181 42 209 278 0 19 chr15 100598622 100598676 -781845 + L2 LINE L2 3261 3313 0 298 179 90 0 chr15 100599081 100599148 -781373 - L1MB2 LINE L1 -54 6117 6045 2138 81 0 7 chr15 100599157 100599468 -781053 - AluSc SINE Alu 0 309 1 638 241 97 39 chr15 100599765 100599972 -780549 - MER58A DNA MER1_type -5 219 1 22 80 0 0 chr15 100601045 100601095 -779426 + AT_rich Low_complexity Low_complexity 1 50 0 630 135 0 0 chr15 100601495 100601584 -778937 - FLAM_A SINE Alu -53 89 1 403 276 148 37 chr15 100602011 100602254 -778267 - L1MEc LINE L1 -4131 2265 1996 2398 63 0 7 chr15 100603050 100603351 -777170 + AluY SINE Alu 3 301 -10 27 0 0 0 chr15 100604170 100604197 -776324 + GC_rich Low_complexity Low_complexity 1 27 0 241 226 24 0 chr15 100605474 100605558 -774963 + (TA)n Simple_repeat Simple_repeat 2 87 0 339 286 57 65 chr15 100607133 100607190 -773331 + L1ME3A LINE L1 4443 4499 -1647 2203 88 30 0 chr15 100607190 100607487 -773034 + AluSp SINE Alu 1 306 -7 339 286 57 65 chr15 100607487 100607691 -772830 + L1ME3A LINE L1 4499 4702 -1444 601 290 84 44 chr15 100607791 100608533 -771988 + L1ME3A LINE L1 4884 5707 -457 244 306 71 22 chr15 100608570 100608753 -771768 + L1ME3A LINE L1 5757 5948 -222 2114 91 6 28 chr15 100608754 100609073 -771448 + AluSx SINE Alu 1 312 0 288 316 10 0 chr15 100609351 100609449 -771072 + (TA)n Simple_repeat Simple_repeat 2 100 0 432 248 88 9 chr15 100615192 100615305 -765216 - MIR SINE MIR -108 154 33 389 187 44 0 chr15 100615806 100615897 -764624 - L1ME4a LINE L1 -38 6083 5989 790 199 204 0 chr15 100615954 100616150 -764371 - MER46A DNA MER2_type 0 236 1 309 68 0 0 chr15 100616164 100616208 -764313 + (CA)n Simple_repeat Simple_repeat 1 44 0 26 82 0 0 chr15 100616610 100616671 -763850 + AT_rich Low_complexity Low_complexity 1 61 0 464 299 53 43 chr15 100616859 100617160 -763361 - L1MC4a LINE L1 -1860 5948 5645 1071 223 18 13 chr15 100617186 100617410 -763111 - MIR SINE MIR -1 261 37 342 267 58 100 chr15 100617410 100617659 -762862 - L1MC4a LINE L1 -2170 5638 5407 1633 163 0 17 chr15 100617659 100617948 -762573 + AluJb SINE Alu 7 290 -22 342 267 58 100 chr15 100617948 100618057 -762464 - L1MC4a LINE L1 -2401 5407 5295 242 237 17 0 chr15 100618736 100618795 -761726 - LTR33 LTR ERVL -437 84 25 193 405 12 0 chr15 100618924 100619008 -761513 - L2 LINE L2 -5 3267 3183 216 0 0 0 chr15 100619516 100619540 -760981 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 1676 133 11 4 chr15 100619541 100619805 -760716 - AluSx SINE Alu -3 309 44 1784 143 0 98 chr15 100620036 100620371 -760150 + AluJb SINE Alu 1 302 0 1012 267 107 16 chr15 100621432 100621806 -758715 + L1ME2 LINE L1 5747 6154 -10 207 194 0 0 chr15 100625141 100625177 -755344 + (ATG)n Simple_repeat Simple_repeat 3 38 0 488 264 136 6 chr15 100625179 100625349 -755172 - MIR SINE MIR -21 241 52 297 296 55 97 chr15 100625651 100625871 -754650 - L1ME3A LINE L1 -252 5918 5713 2182 96 3 3 chr15 100625871 100626172 -754349 + AluSx SINE Alu 1 301 -11 297 296 55 97 chr15 100626172 100626262 -754259 - L1ME3A LINE L1 -457 5713 5621 3398 218 73 13 chr15 100626411 100627386 -753135 - L1MB7 LINE L1 -1 6183 5149 1194 245 32 27 chr15 100627373 100627761 -752760 - L1MCa LINE L1 -3947 2479 2130 * 344 296 88 56 chr15 100627907 100628339 -752182 - ERVL LTR ERVL -3520 2244 1799 561 208 46 15 chr15 100628782 100628912 -751609 + MER5A DNA MER1_type 21 154 -35 549 289 147 27 chr15 100629887 100630261 -750260 - LTR33 LTR ERVL -2 519 101 345 236 0 0 chr15 100630553 100630625 -749896 - LTR33 LTR ERVL -449 72 1 2783 296 96 30 chr15 100630635 100632879 -747642 - L1M4 LINE L1 -1100 5046 2652 449 329 54 36 chr15 100635999 100636221 -744300 - MIR SINE MIR -24 238 13 2139 100 21 4 chr15 100636232 100636548 -743973 - AluSx SINE Alu 0 321 1 203 288 106 0 chr15 100636921 100636987 -743534 + L2 LINE L2 3200 3272 0 180 0 0 0 chr15 100638271 100638291 -742230 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2537 186 22 37 chr15 100638292 100638444 -742077 - L1MB3 LINE L1 -10 6173 6020 366 80 0 0 chr15 100638444 100638494 -742027 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 2204 100 0 14 chr15 100638494 100638784 -741737 - AluSx SINE Alu -26 286 1 2537 186 22 37 chr15 100638784 100639167 -741354 - L1MB3 LINE L1 -161 6022 5645 200 222 67 0 chr15 100639481 100639526 -740995 + MER91 DNA MER1_type 69 116 -24 291 299 45 25 chr15 100639762 100639919 -740602 + Charlie8 DNA MER1_type 25 184 -2233 320 275 252 5 chr15 100642832 100643054 -737467 - L2 LINE L2 -5 3267 2991 200 213 50 62 chr15 100643563 100643643 -736878 - L2 LINE L2 -217 3055 2977 448 331 0 18 chr15 100643970 100644465 -736056 + (CATATA)n Simple_repeat Simple_repeat 5 170 0 460 343 6 11 chr15 100644014 100644046 -736475 + (CA)n Simple_repeat Simple_repeat 1 32 -148 1847 156 58 6 chr15 100644046 100644373 -736148 - MER2 DNA MER2_type 0 344 1 460 343 6 11 chr15 100644373 100644521 -736000 + (CA)n Simple_repeat Simple_repeat 32 180 0 510 350 46 0 chr15 100644719 100644916 -735605 + MIR SINE MIR 56 261 -1 305 121 138 0 chr15 100645993 100646051 -734470 + MIR SINE MIR 83 148 -114 558 253 42 12 chr15 100646766 100646932 -733589 - MER58B DNA MER1_type -4 337 167 1440 154 52 0 chr15 100646940 100647207 -733314 + L1MB3 LINE L1 5639 5919 -264 278 229 194 42 chr15 100648006 100648150 -732371 - MIR SINE MIR -16 246 81 247 296 25 12 chr15 100648259 100648340 -732181 - MIR SINE MIR -7 255 174 433 311 40 34 chr15 100648697 100648874 -731647 - MIR SINE MIR -74 188 11 216 287 35 52 chr15 100648929 100649044 -731477 + L3b LINE CR1 1190 1302 -281 257 279 273 25 chr15 100650490 100650651 -729870 - L2 LINE L2 -1 3312 3112 252 143 0 0 chr15 100651093 100651135 -729386 + (TGGA)n Simple_repeat Simple_repeat 4 45 0 205 350 84 30 chr15 100651912 100652115 -728406 - L2 LINE L2 0 3272 3059 186 315 0 0 chr15 100654127 100654181 -726340 + L2 LINE L2 2307 2360 -954 200 309 50 7 chr15 100654297 100654436 -726085 + L2 LINE L2 2560 2704 -610 1489 203 95 14 chr15 100655251 100655610 -724911 - MLT1B LTR MaLR -2 388 1 654 125 0 0 chr15 100658104 100658200 -722321 - AluSg/x SINE Alu 0 312 217 237 229 100 14 chr15 100658394 100658464 -722057 + L2 LINE L2 3232 3307 -6 337 292 108 36 chr15 100660161 100660356 -720165 - MIR SINE MIR -36 226 18 235 356 38 0 chr15 100660381 100660541 -719980 - L1ME4a LINE L1 0 6121 5956 222 208 0 0 chr15 100660748 100660801 -719720 + CT-rich Low_complexity Low_complexity 2 54 0 1908 126 7 25 chr15 100660804 100661090 -719431 - AluJb SINE Alu -17 295 15 837 221 68 47 chr15 100662444 100662679 -717842 + MIR SINE MIR 11 250 -12 359 230 21 75 chr15 100662822 100663009 -717512 + L1ME2 LINE L1 5752 5928 -236 * 1506 219 51 1 chr15 100662866 100663245 -717276 + L1MB3 LINE L1 5785 6180 -3 294 288 104 61 chr15 100663888 100664051 -716470 + MIR SINE MIR 33 202 -60 187 247 37 25 chr15 100665152 100665233 -715288 - L2 LINE L2 -165 3107 3026 470 343 6 22 chr15 100667042 100667223 -713298 + MIR SINE MIR 31 208 -54 333 261 232 0 chr15 100667370 100667508 -713013 + MER5A DNA MER1_type 20 189 0 379 285 20 67 chr15 100667736 100667989 -712532 + L1MEc LINE L1 1859 2099 -4297 576 285 79 65 chr15 100668604 100669194 -711327 - L1ME LINE L1 -4348 1913 1333 1682 143 13 63 chr15 100669194 100669494 -711027 - AluJo SINE Alu -17 295 11 576 285 79 65 chr15 100669494 100669883 -710638 - L1ME LINE L1 -4928 1333 902 2256 119 0 7 chr15 100669883 100670185 -710336 + AluSx SINE Alu 1 300 -12 576 285 79 65 chr15 100670185 100670523 -709998 - L1ME LINE L1 -5359 902 570 2539 50 0 3 chr15 100670524 100670821 -709700 + AluY SINE Alu 1 296 -15 436 320 67 58 chr15 100671084 100671547 -708974 - L1ME LINE L1 -5585 485 19 1981 224 113 10 chr15 100671589 100672094 -708427 - MLT1F1 LTR MaLR 0 567 11 2243 111 3 7 chr15 100672199 100672506 -708015 + AluSx SINE Alu 1 306 -6 23 0 0 0 chr15 100672743 100672766 -707755 + AT_rich Low_complexity Low_complexity 1 23 0 1870 171 7 10 chr15 100672784 100673083 -707438 + AluJb SINE Alu 1 298 -14 2234 112 0 13 chr15 100673239 100673542 -706979 - AluSx SINE Alu -13 299 1 1159 291 101 52 chr15 100673816 100674634 -705887 - L1MEc LINE L1 -1446 4769 3993 2049 130 34 0 chr15 100674634 100674926 -705595 + AluSq SINE Alu 1 302 -11 1159 291 101 52 chr15 100674926 100675496 -705025 - L1MEc LINE L1 -2222 3993 3453 443 143 0 24 chr15 100675496 100675580 -704941 + L1PA16 LINE L1 6084 6165 -1 1159 291 101 52 chr15 100675580 100676093 -704428 - L1MEc LINE L1 -2762 3453 2772 1812 75 0 4 chr15 100676102 100676342 -704179 - THE1A LTR MaLR 0 355 117 8123 94 2 1 chr15 100676356 100677467 -703054 - THE1A-int LTR MaLR -468 1112 1 2828 84 0 0 chr15 100677467 100677822 -702699 - THE1A LTR MaLR 0 355 1 732 269 98 43 chr15 100677880 100678185 -702336 + MER102b DNA MER1_type 2 323 -18 490 268 177 50 chr15 100678307 100678661 -701860 - L1MEc LINE L1 -3640 2575 2209 282 116 0 0 chr15 100678661 100678704 -701817 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 490 268 177 50 chr15 100678704 100678807 -701714 - L1MEc LINE L1 -4006 2209 2120 478 248 81 0 chr15 100679178 100679339 -701182 - HAL1 LINE L1 -822 1685 1512 731 217 11 0 chr15 100679350 100679539 -700982 - L1MDa LINE L1 -3755 2785 2597 29 28 0 0 chr15 100679539 100679575 -700946 + AT_rich Low_complexity Low_complexity 1 36 0 1119 170 36 9 chr15 100679604 100679828 -700693 - L1MA4A LINE L1 0 6303 6074 2098 159 67 25 chr15 100679828 100680305 -700216 - L1MDa LINE L1 -3928 2612 2116 364 215 0 0 chr15 100680305 100680391 -700130 - L1MDa LINE L1 -4916 1624 1453 392 0 0 20 chr15 100680403 100680452 -700069 + (TCC)n Simple_repeat Simple_repeat 1 48 0 993 156 0 12 chr15 100680452 100680605 -699916 - FRAM SINE Alu -159 153 1 1656 246 109 74 chr15 100680606 100680733 -699788 - L1MDa LINE L1 -4984 1556 1435 198 0 0 0 chr15 100680733 100680755 -699766 + (TA)n Simple_repeat Simple_repeat 1 22 0 1656 246 109 74 chr15 100680755 100681766 -698755 - L1MDa LINE L1 -5105 1435 378 224 365 39 0 chr15 100682578 100682682 -697839 - MIR SINE MIR -109 153 46 1838 179 7 0 chr15 100683216 100683518 -697003 + AluJo SINE Alu 1 304 -8 2656 37 0 0 chr15 100683846 100684143 -696378 - AluY SINE Alu -14 297 1 1105 62 0 0 chr15 100684143 100684271 -696250 - AluSc SINE Alu -181 128 1 183 282 36 64 chr15 100685363 100685473 -695048 + MIR3 SINE MIR 62 168 -40 2326 215 26 17 chr15 100685549 100686089 -694432 - MER74A LTR ERVL 0 558 14 225 163 0 0 chr15 100687201 100687250 -693271 + (TG)n Simple_repeat Simple_repeat 2 50 0 2257 100 7 0 chr15 100687403 100687693 -692828 + AluSx SINE Alu 1 292 -20 345 315 0 0 chr15 100689270 100689381 -691140 + L1MB3 LINE L1 5145 5255 -891 1860 89 0 4 chr15 100689471 100689735 -690786 + AluSx SINE Alu 48 310 0 7410 29 2 0 chr15 100690010 100691640 -688881 - L1PA3 LINE L1 0 6155 4524 212 162 0 0 chr15 100691640 100691677 -688844 - MIR SINE MIR -67 141 105 246 314 171 29 chr15 100691697 100691837 -688684 - MIR SINE MIR -18 244 85 1045 135 0 24 chr15 100693256 100693426 -687095 + FRAM SINE Alu 1 166 0 2208 103 7 0 chr15 100694244 100694561 -685960 + AluSx SINE Alu 1 319 0 484 245 166 25 chr15 100698047 100698210 -682311 + MER5A DNA MER1_type 4 189 0 721 179 0 8 chr15 100699171 100699305 -681216 + FLAM_A SINE Alu 1 133 0 1924 224 68 25 chr15 100702535 100703052 -677469 - MLT1E2 LTR MaLR -1 625 87 664 202 35 12 chr15 100704019 100704192 -676329 - L1MB3 LINE L1 -4 6179 6003 1800 148 145 3 chr15 100704194 100704532 -675989 - MLT1B LTR MaLR -4 386 1 1209 133 5 0 chr15 100704532 100704727 -675794 - L1MB3 LINE L1 -174 6009 5814 2264 222 72 5 chr15 100706501 100707095 -673426 + L1MB3 LINE L1 5540 6173 -10 497 142 136 52 chr15 100707820 100707975 -672546 - HsTC2 DNA Tc2 0 1898 1731 363 267 41 14 chr15 100707981 100708127 -672394 - HsTC2 DNA Tc2 -1724 174 25 2052 153 0 3 chr15 100708127 100708421 -672100 + AluJo SINE Alu 1 293 -19 284 238 8 82 chr15 100709348 100709411 -671110 + MER113 DNA MER1_type? 36 87 -434 735 197 0 0 chr15 100709411 100709538 -670983 + FLAM_A SINE Alu 1 127 -6 284 238 8 82 chr15 100709538 100709596 -670925 + MER113 DNA MER1_type? 87 148 -373 229 233 55 27 chr15 100709753 100709826 -670695 + MIR3 SINE MIR 119 193 -15 2282 91 19 19 chr15 100710009 100710318 -670203 - AluSq SINE Alu -4 309 1 225 0 0 0 chr15 100712057 100712082 -668439 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2198 102 0 7 chr15 100712082 100712365 -668156 - AluSq SINE Alu -32 281 1 25 0 0 0 chr15 100712365 100712390 -668131 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr15 100713198 100713228 -667293 + AT_rich Low_complexity Low_complexity 1 30 0 561 261 98 15 chr15 100715849 100716052 -664469 - MIR SINE MIR -15 247 28 1370 253 65 5 chr15 100716818 100717186 -663335 + MER82 DNA MER2_type 1 390 -263 1160 151 0 0 chr15 100717187 100717359 -663162 + FRAM SINE Alu 1 171 -5 1056 217 22 52 chr15 100717359 100717399 -663122 + MER82 DNA MER2_type 395 435 -218 2219 119 3 0 chr15 100717399 100717692 -662829 - AluSx SINE Alu -18 294 1 1056 217 22 52 chr15 100717692 100717918 -662603 + MER82 DNA MER2_type 435 653 0 290 329 0 0 chr15 100717953 100718029 -662492 - MIR3 SINE MIR -8 200 125 2286 98 3 0 chr15 100718192 100718488 -662033 + AluSx SINE Alu 1 297 -15 490 172 0 0 chr15 100721999 100722092 -658429 - L1PB4 LINE L1 -5 6151 6059 1828 120 8 0 chr15 100722218 100722477 -658044 - AluSg SINE Alu -10 300 40 329 113 0 0 chr15 100722630 100722683 -657838 - AluSg SINE Alu -250 53 1 21 0 0 0 chr15 100724554 100724575 -655946 + AT_rich Low_complexity Low_complexity 1 21 0 301 235 112 20 chr15 100724581 100724679 -655842 + Charlie8 DNA MER1_type 116 222 -2195 219 242 80 72 chr15 100724861 100725065 -655456 + MIR SINE MIR 3 204 -58 2171 111 31 0 chr15 100725339 100725628 -654893 + AluSx SINE Alu 11 308 -4 3414 222 31 6 chr15 100727340 100727352 -653169 - L1M4 LINE L1 -946 5200 5190 3753 171 12 22 chr15 100727352 100728110 -652411 - L1MB7 LINE L1 -14 6170 5421 3414 222 31 6 chr15 100728110 100728935 -651586 - L1M4 LINE L1 -956 5190 4342 190 270 149 14 chr15 100728980 100729054 -651467 - L2 LINE L2 -2 3311 3228 2444 59 0 30 chr15 100729507 100729810 -650711 + AluY SINE Alu 1 294 -17 238 267 178 25 chr15 100730326 100730528 -649993 + L2 LINE L2 1711 1943 -1371 632 304 37 5 chr15 100730597 100730811 -649710 + MIR SINE MIR 13 233 -29 477 287 207 31 chr15 100730815 100731189 -649332 + L2 LINE L2 1977 2284 -1029 2398 104 0 0 chr15 100731189 100731488 -649033 + AluY SINE Alu 1 299 -12 477 287 207 31 chr15 100731488 100731949 -648572 + L2 LINE L2 2284 2992 -321 936 269 156 19 chr15 100732395 100732755 -647766 - L2 LINE L2 -5 3308 2900 208 192 17 0 chr15 100732758 100732827 -647694 - L2 LINE L2 -372 2942 2870 * 210 167 0 0 chr15 100732803 100732845 -647676 - L2 LINE L2 -372 2941 2900 210 224 0 0 chr15 100732841 100732890 -647631 - L2 LINE L2 -365 2949 2901 199 191 0 0 chr15 100732893 100732935 -647586 - L2 LINE L2 -372 2942 2901 * 1431 280 118 30 chr15 100732931 100733635 -646886 - L2 LINE L2 -365 2949 2184 337 303 72 41 chr15 100734844 100735065 -645456 - L2 LINE L2 -20 3252 3025 472 288 14 72 chr15 100736764 100736887 -643634 + L1M4 LINE L1 3535 3664 -2482 2212 112 0 0 chr15 100736887 100737183 -643338 - AluSx SINE Alu -16 296 1 472 288 14 72 chr15 100737183 100737337 -643184 + L1M4 LINE L1 3664 3796 -2350 * 1615 250 57 28 chr15 100737329 100737644 -642877 - L1MEc LINE L1 -4211 2185 1881 2043 136 0 0 chr15 100737644 100737938 -642583 - AluSx SINE Alu -1 311 18 1615 250 57 28 chr15 100737938 100738233 -642288 - L1MEc LINE L1 -4515 1881 1557 2036 112 6 42 chr15 100738241 100738554 -641967 + AluSx SINE Alu 1 302 -10 2133 86 38 7 chr15 100738566 100738857 -641664 + AluSx SINE Alu 1 300 -12 287 183 12 12 chr15 100738883 100738965 -641556 + HAL1 LINE L1 1069 1150 -1357 653 266 51 45 chr15 100738979 100739332 -641189 + HAL1 LINE L1 2146 2500 -7 216 359 19 0 chr15 100739557 100739663 -640858 + (TG)n Simple_repeat Simple_repeat 1 108 0 207 0 0 0 chr15 100739869 100739892 -640629 + (TA)n Simple_repeat Simple_repeat 1 23 0 1655 157 7 18 chr15 100739892 100740178 -640343 - AluJo SINE Alu -29 283 1 400 155 29 48 chr15 100740189 100740292 -640229 - L1MB7 LINE L1 0 6184 6084 360 306 117 45 chr15 100741693 100741984 -638537 + L1ME4a LINE L1 5517 5828 -293 558 292 20 20 chr15 100741989 100742191 -638330 - L2 LINE L2 0 3313 3112 21 82 0 0 chr15 100742284 100742333 -638188 + AT_rich Low_complexity Low_complexity 1 49 0 2027 106 27 0 chr15 100742506 100742807 -637714 + AluY SINE Alu 1 309 -2 248 209 186 23 chr15 100743227 100743313 -637208 + L1MC4a LINE L1 5368 5467 -2341 707 225 113 47 chr15 100743453 100743666 -636855 - MIR SINE MIR -15 247 21 347 259 85 40 chr15 100743706 100743720 -636801 + L1MC4a LINE L1 5704 5716 -2092 1980 192 21 0 chr15 100743720 100744059 -636462 + MER7A DNA MER2_type 2 345 -1 347 259 85 40 chr15 100744059 100744291 -636230 + L1MC4a LINE L1 5716 6005 -1803 1819 152 3 0 chr15 100744544 100744827 -635694 + AluJb SINE Alu 1 284 -28 237 65 0 0 chr15 100744828 100744859 -635662 + (CA)n Simple_repeat Simple_repeat 2 32 0 300 200 0 17 chr15 100746759 100746819 -633702 + Tigger5 DNA MER2_type 2259 2317 -6 454 205 0 0 chr15 100746821 100746899 -633622 - Tigger5 DNA MER2_type -2244 79 2 248 116 0 23 chr15 100748070 100748113 -632408 - Alu SINE Alu -72 61 20 385 301 92 3 chr15 100748407 100748678 -631843 - L1MC/D LINE L1 -728 5442 5175 824 179 8 0 chr15 100748706 100748840 -631681 - AluSq/x SINE Alu -177 136 2 201 195 0 0 chr15 100749410 100749451 -631070 + (ATG)n Simple_repeat Simple_repeat 1 41 0 204 150 0 25 chr15 100749633 100749673 -630848 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 296 303 59 54 chr15 100749917 100750138 -630383 - L1ME LINE L1 -352 5769 5548 711 206 16 0 chr15 100750155 100750281 -630240 - FLAM_C SINE Alu -14 129 2 736 218 13 19 chr15 100751441 100751597 -628924 - MIR SINE MIR -79 183 29 279 335 68 43 chr15 100751689 100751772 -628749 + MIR SINE MIR 28 107 -155 1695 155 14 7 chr15 100751772 100752056 -628465 - AluJo SINE Alu -26 286 1 279 335 68 43 chr15 100752056 100752133 -628388 + MIR SINE MIR 107 192 -70 2148 109 6 6 chr15 100752766 100753078 -627443 + AluSx SINE Alu 1 312 0 392 282 85 89 chr15 100753349 100753665 -626856 - MLT1J LTR MaLR -196 315 1 21 0 0 0 chr15 100754251 100754272 -626249 + AT_rich Low_complexity Low_complexity 1 21 0 600 290 6 23 chr15 100754357 100754533 -625988 - LTR67 LTR ERVL -366 191 19 1137 145 57 5 chr15 100754545 100754738 -625783 + AluJb SINE Alu 3 205 -107 846 308 69 38 chr15 100754892 100755340 -625181 + L2 LINE L2 2210 2671 -643 270 287 0 11 chr15 100755457 100755544 -624977 + L2 LINE L2 3155 3240 -73 854 185 7 0 chr15 100755587 100755733 -624788 + FRAM SINE Alu 1 146 -30 2153 111 3 3 chr15 100755748 100756054 -624467 + AluSx SINE Alu 1 306 -6 249 222 0 0 chr15 100757347 100757410 -623111 + (TGGA)n Simple_repeat Simple_repeat 3 65 0 549 253 0 0 chr15 100757413 100757591 -622930 + (TGGG)n Simple_repeat Simple_repeat 3 180 0 219 239 0 0 chr15 100757592 100757638 -622883 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 201 337 30 30 chr15 100759420 100759521 -621000 - MER5A DNA MER1_type -68 121 21 297 239 148 0 chr15 100760961 100761049 -619472 - L2 LINE L2 -2 3311 3211 2059 114 7 7 chr15 100765679 100765977 -614544 - AluSx SINE Alu -14 298 1 275 232 40 40 chr15 100767617 100767716 -612805 - MER5A DNA MER1_type -68 121 23 339 317 10 10 chr15 100767876 100767977 -612544 - MIR SINE MIR -44 218 118 2940 215 88 36 chr15 100768907 100769040 -611481 - MER21B LTR ERV1 -17 846 721 2126 109 0 0 chr15 100769040 100769352 -611169 + AluSx SINE Alu 1 312 0 2940 215 88 36 chr15 100769352 100770011 -610510 - MER21B LTR ERV1 -142 721 12 470 286 129 14 chr15 100770182 100770399 -610122 - MIR SINE MIR 0 262 21 908 185 11 6 chr15 100771253 100771431 -609090 + L1MB3 LINE L1 5977 6155 -28 651 160 24 24 chr15 100771436 100771561 -608960 + BC200 scRNA scRNA 9 133 -67 2114 114 7 7 chr15 100772214 100772520 -608001 + AluSx SINE Alu 1 306 -6 2150 264 112 5 chr15 100773298 100773943 -606578 + MER45C DNA AcHobo 240 953 0 698 174 0 0 chr15 100774122 100774237 -606284 - L1MB3 LINE L1 -2 6181 6067 732 210 20 35 chr15 100775374 100775574 -604947 - Charlie5 DNA MER1_type 0 2624 2428 201 275 72 0 chr15 100775696 100775765 -604756 + MIR SINE MIR 110 183 -79 190 349 48 0 chr15 100776213 100776296 -604225 - L2 LINE L2 -1 3271 3185 1018 147 0 0 chr15 100776413 100776570 -603951 - AluSg/x SINE Alu -22 288 132 2078 108 7 7 chr15 100776570 100776877 -603644 - AluY SINE Alu -4 307 1 419 202 29 40 chr15 100777283 100777456 -603065 + (GGGTG)n Simple_repeat Simple_repeat 1 171 0 412 207 35 35 chr15 100777468 100777642 -602879 + (GGGTG)n Simple_repeat Simple_repeat 1 174 0 344 221 35 41 chr15 100777859 100778031 -602490 + (GGGTG)n Simple_repeat Simple_repeat 1 171 0 2236 161 94 13 chr15 100778046 100778247 -602274 - MSTB LTR MaLR -1 425 242 1997 106 3 51 chr15 100778247 100778559 -601962 + AluSx SINE Alu 1 297 -15 2236 161 94 13 chr15 100778559 100778749 -601772 - MSTB LTR MaLR -184 242 2 732 277 24 5 chr15 100780398 100780604 -599917 + MLT1E2 LTR MaLR 410 619 -7 505 254 92 14 chr15 100781552 100781694 -598827 - MER58B DNA MER1_type -6 335 183 2287 102 0 0 chr15 100783934 100784248 -596273 - AluSq SINE Alu 0 314 1 239 276 0 40 chr15 100786192 100786268 -594253 - MLT1K LTR MaLR 0 588 516 2470 79 7 0 chr15 100786945 100787248 -593273 + AluSq SINE Alu 1 305 -8 314 272 12 0 chr15 100787524 100787605 -592916 - MIR3 SINE MIR -44 164 83 573 226 8 15 chr15 100787925 100788058 -592463 + FLAM_C SINE Alu 2 133 -10 535 14 28 0 chr15 100788064 100788136 -592385 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 1275 129 43 5 chr15 100788768 100788978 -591543 + MER20 DNA MER1_type 2 219 0 393 313 94 20 chr15 100789235 100789436 -591085 - L1 LINE L1 -2903 3243 3028 1951 102 0 89 chr15 100789471 100789795 -590726 + AluSx SINE Alu 1 295 -17 1598 235 103 16 chr15 100789828 100790331 -590190 - L1MC4 LINE L1 -156 7886 7340 2482 279 103 18 chr15 100790349 100790462 -590059 + L1ME3A LINE L1 4085 4187 -1983 2505 90 0 0 chr15 100790462 100790772 -589749 - AluSx SINE Alu -2 310 1 2482 279 103 18 chr15 100790772 100792484 -588037 + L1ME3A LINE L1 4187 6092 -78 1658 268 101 36 chr15 100792526 100792707 -587814 + L1ME3A LINE L1 4981 5149 -1021 2154 145 0 0 chr15 100792707 100793018 -587503 + AluJb SINE Alu 1 311 -1 1658 268 101 36 chr15 100793018 100793773 -586748 + L1ME3A LINE L1 5149 5996 -174 257 276 92 0 chr15 100793793 100793891 -586630 + L1ME3A LINE L1 6049 6155 -15 2104 118 0 7 chr15 100795418 100795722 -584799 - AluSp SINE Alu -11 302 1 183 241 0 37 chr15 100796181 100796235 -584286 + MIR SINE MIR 205 256 -6 184 311 60 90 chr15 100796237 100796404 -584117 + L2 LINE L2 3151 3312 -1 212 179 0 0 chr15 100796746 100796785 -583736 + T-rich Low_complexity Low_complexity 1 39 0 244 253 191 0 chr15 100797866 100798028 -582493 - L1M4 LINE L1 -907 5239 5047 885 178 172 11 chr15 100798031 100798313 -582208 + MER33 DNA MER1_type 1 319 -5 1572 195 3 39 chr15 100798492 100798633 -581888 + AluJb SINE Alu 1 146 -166 2435 84 3 0 chr15 100798633 100798932 -581589 + AluSg SINE Alu 1 300 -10 1572 195 3 39 chr15 100798932 100799098 -581423 + AluJb SINE Alu 146 297 -15 691 269 70 20 chr15 100799387 100799729 -580792 - L1M4 LINE L1 -3574 2572 2214 2165 71 54 41 chr15 100799729 100800023 -580498 - AluSg SINE Alu -12 298 1 2491 38 0 3 chr15 100800135 100800451 -580070 + L1PA5 LINE L1 5838 6152 -2 2437 68 10 0 chr15 100802835 100803129 -577392 + AluSp SINE Alu 1 297 -16 458 274 126 11 chr15 100803274 100803449 -577072 + MIR SINE MIR 6 200 -62 188 353 15 0 chr15 100803501 100803569 -576952 - L2 LINE L2 -24 3248 3180 2148 93 24 0 chr15 100803682 100803972 -576549 - AluSq SINE Alu -16 297 1 2234 81 0 56 chr15 100804050 100804370 -576151 - AluY SINE Alu -9 302 1 1065 231 130 10 chr15 100804371 100804678 -575843 + Charlie1a DNA MER1_type 72 415 -1040 2436 187 95 31 chr15 100804720 100805307 -575214 + Charlie1a DNA MER1_type 548 1172 -283 209 286 134 36 chr15 100805699 100805811 -574710 + L2 LINE L2 3150 3272 0 471 191 154 0 chr15 100806372 100806508 -574013 - AluJb SINE Alu -154 158 2 2547 66 0 0 chr15 100806758 100807061 -573460 - AluY SINE Alu -8 303 1 402 256 107 51 chr15 100807192 100807390 -573131 - MLT1H LTR MaLR -221 208 15 2835 189 84 32 chr15 100807790 100808361 -572160 - L1MB8 LINE L1 -140 6038 5498 2058 142 0 13 chr15 100808361 100808670 -571851 - AluSx SINE Alu -7 305 1 2835 189 84 32 chr15 100808670 100809212 -571309 - L1MB8 LINE L1 -680 5498 4815 680 231 107 37 chr15 100809334 100809622 -570899 - MLT1H LTR MaLR -230 319 11 339 339 74 9 chr15 100809688 100809918 -570603 - L2 LINE L2 -250 3063 2819 321 175 18 9 chr15 100810965 100811079 -569442 + CT-rich Low_complexity Low_complexity 1 115 0 219 224 35 0 chr15 100812623 100812681 -567840 - MIR SINE MIR -117 145 86 2293 110 0 19 chr15 100813047 100813365 -567156 + AluSx SINE Alu 1 312 0 2334 101 0 22 chr15 100813376 100813694 -566827 + AluSx SINE Alu 1 311 -1 1573 153 26 99 chr15 100814736 100815121 -565400 + MLT1A1 LTR MaLR 9 365 0 269 50 0 25 chr15 100815187 100815227 -565294 + (TA)n Simple_repeat Simple_repeat 1 39 0 674 191 44 0 chr15 100815240 100815376 -565145 - MLT1A1 LTR MaLR -215 150 9 2245 113 0 0 chr15 100815405 100815697 -564824 - AluSx SINE Alu -20 292 1 266 246 29 0 chr15 100816470 100816539 -563982 + MLT1K LTR MaLR 454 524 -64 215 152 20 19 chr15 100817738 100817790 -562731 + MIR SINE MIR 93 147 -63 1755 156 45 7 chr15 100817991 100818279 -562242 + AluJo SINE Alu 1 299 -13 190 171 0 49 chr15 100819709 100819750 -560771 - MIR SINE MIR -113 149 111 357 276 110 7 chr15 100819835 100819980 -560541 - MIR SINE MIR -7 255 96 426 274 45 6 chr15 100820081 100820238 -560283 - MER5B DNA MER1_type -13 165 3 300 347 62 28 chr15 100820575 100820751 -559770 + L2 LINE L2 3132 3313 0 205 240 120 0 chr15 100821413 100821488 -559033 + MER5B DNA MER1_type 42 125 -53 2052 169 41 41 chr15 100822727 100823146 -557375 - MSTB LTR MaLR 0 426 8 881 216 0 17 chr15 100823229 100823405 -557116 - AluJb SINE Alu -13 299 127 329 240 0 0 chr15 100823888 100823963 -556558 - MLT1K LTR MaLR -34 554 480 1555 178 34 34 chr15 100824129 100824478 -556043 - MLT1A1 LTR MaLR -16 349 1 1943 166 5 49 chr15 100824483 100824869 -555652 - MLT1B LTR MaLR -21 369 1 582 270 38 42 chr15 100825031 100825268 -555253 + MLT1D LTR MaLR 12 247 -258 266 254 0 0 chr15 100825389 100825448 -555073 + MLT1D LTR MaLR 447 505 0 192 170 0 0 chr15 100825771 100825824 -554697 + CT-rich Low_complexity Low_complexity 1 53 0 * 228 137 0 0 chr15 100825823 100825874 -554647 + (CA)n Simple_repeat Simple_repeat 1 51 0 238 211 0 53 chr15 100825874 100825915 -554606 + CT-rich Low_complexity Low_complexity 1 38 -34 2281 73 70 0 chr15 100825915 100826202 -554319 - AluY SINE Alu -4 307 1 238 211 0 53 chr15 100826202 100826236 -554285 + CT-rich Low_complexity Low_complexity 38 72 0 1616 194 0 3 chr15 100827479 100827762 -552759 + AluJo SINE Alu 1 282 -30 254 337 10 10 chr15 100828928 100829029 -551492 - L2 LINE L2 -21 3292 3192 2312 119 0 0 chr15 100829254 100829556 -550965 - AluSx SINE Alu -10 302 1 1022 249 161 8 chr15 100829632 100830022 -550499 + MER90 LTR ERV1 1 450 -164 800 169 42 106 chr15 100830544 100830818 -549703 - LTR12 LTR ERV1 -431 1800 55 234 269 0 0 chr15 100830834 100830886 -549635 - LTR30 LTR ERV1 -670 52 1 215 333 32 0 chr15 100832089 100832152 -548369 + MIR SINE MIR 80 144 -118 2541 62 3 0 chr15 100832455 100832759 -547762 - AluY SINE Alu -4 307 3 368 291 164 38 chr15 100832812 100833025 -547496 - MIR SINE MIR -3 259 20 3675 163 23 48 chr15 100833459 100833912 -546609 - L1MB3 LINE L1 -1 6182 5754 2313 104 0 0 chr15 100833912 100834209 -546312 - AluSg SINE Alu 0 310 14 3675 163 23 48 chr15 100834209 100834529 -545992 - L1MB3 LINE L1 -429 5754 5428 2205 121 3 6 chr15 100834599 100834912 -545609 - AluSx SINE Alu 0 312 1 1252 159 13 9 chr15 100834921 100835148 -545373 - L1MA5 LINE L1 -2 6298 6071 3444 123 2 4 chr15 100835148 100835675 -544846 + MER1A DNA MER1_type 4 529 0 597 231 17 17 chr15 100835675 100835848 -544673 - L1MA5 LINE L1 -220 6080 5908 473 283 253 3 chr15 100836466 100836770 -543751 + L2 LINE L2 1779 2158 -1156 987 229 143 9 chr15 100837492 100837807 -542714 - MLT1A1 LTR MaLR -8 357 1 523 224 42 7 chr15 100838456 100838599 -541922 - MLT1H LTR MaLR -382 167 20 354 258 138 12 chr15 100838821 100839124 -541397 - LTR33 LTR ERVL -28 493 116 2328 90 6 6 chr15 100839153 100839465 -541056 - AluSx SINE Alu 0 312 1 1221 222 63 46 chr15 100839511 100839663 -540858 + MLT1C LTR MaLR 1 149 -318 1792 178 49 41 chr15 100839663 100840050 -540471 - MLT1B LTR MaLR 0 390 1 1221 222 63 46 chr15 100840050 100840073 -540448 + MLT1C LTR MaLR 149 170 -297 2057 99 0 28 chr15 100840073 100840357 -540164 + AluSx SINE Alu 1 276 -36 1221 222 63 46 chr15 100840357 100840639 -539882 + MLT1C LTR MaLR 170 467 0 337 147 147 0 chr15 100840895 100840970 -539551 + LTR33 LTR ERVL 2 87 -434 555 259 116 16 chr15 100841701 100841952 -538569 - MLT1C LTR MaLR 0 467 192 1531 164 0 16 chr15 100841958 100842208 -538313 - AluSg/x SINE Alu -1 311 66 2062 213 97 54 chr15 100842533 100842607 -537914 + L1ME1 LINE L1 5395 5464 -702 1900 121 28 21 chr15 100842607 100842897 -537624 + AluSx SINE Alu 1 292 -20 2062 213 97 54 chr15 100842897 100843471 -537050 + L1ME1 LINE L1 5464 6071 -95 3785 165 51 64 chr15 100843473 100844329 -536192 + MER21B LTR ERV1 1 845 -18 443 139 69 30 chr15 100844351 100844452 -536069 + L1MA10 LINE L1 6228 6332 -2 2471 85 0 0 chr15 100844457 100844764 -535757 + AluSx SINE Alu 1 307 -5 2277 109 0 0 chr15 100845183 100845477 -535044 + AluSg SINE Alu 2 295 -15 4961 123 70 24 chr15 100845480 100845932 -534589 + L1MA4 LINE L1 5303 5733 -567 2342 105 0 19 chr15 100845932 100846247 -534274 + AluSx SINE Alu 1 309 -3 4961 123 70 24 chr15 100846247 100846743 -533778 + L1MA4 LINE L1 5733 6294 -6 184 253 80 53 chr15 100847131 100847206 -533315 + L3 LINE CR1 1409 1485 -92 222 274 0 0 chr15 100847301 100847352 -533169 - MER5A DNA MER1_type -2 187 137 1268 177 131 8 chr15 100847798 100848058 -532463 + AluJb SINE Alu 1 292 -20 2229 108 3 0 chr15 100848062 100848357 -532164 + AluSq SINE Alu 1 296 -17 2192 117 3 0 chr15 100848358 100848649 -531872 + AluSc SINE Alu 1 292 -17 313 284 12 12 chr15 100848658 100848739 -531782 - L1MCa LINE L1 -4362 2064 1984 726 276 58 12 chr15 100848905 100849148 -531373 - L1MC4a LINE L1 -1960 5848 5595 480 175 0 0 chr15 100849160 100849240 -531281 + AluJ/FRAM SINE Alu 223 302 -10 306 0 0 0 chr15 100850091 100850125 -530396 + (CA)n Simple_repeat Simple_repeat 1 34 0 2418 62 3 16 chr15 100852060 100852366 -528155 - AluSp SINE Alu -11 302 1 28 29 0 0 chr15 100853516 100853551 -526970 + GC_rich Low_complexity Low_complexity 1 35 0 33 43 0 0 chr15 100853747 100853794 -526727 + GC_rich Low_complexity Low_complexity 1 47 0 214 200 27 36 chr15 100854248 100854358 -526163 + (CGG)n Simple_repeat Simple_repeat 2 110 0 203 212 42 36 chr15 100854329 100854494 -526027 + (CGCGG)n Simple_repeat Simple_repeat 2 167 0 * 21 57 0 0 chr15 100854642 100854677 -525844 + GC_rich Low_complexity Low_complexity 1 35 0 2471 79 0 3 chr15 100856114 100856418 -524103 + AluSx SINE Alu 1 303 -9 2279 86 0 52 chr15 100856826 100857151 -523370 + AluY SINE Alu 1 308 -3 187 188 176 71 chr15 100857954 100858039 -522482 - MIR3 SINE MIR -6 202 109 381 321 185 3 chr15 100858483 100858826 -521695 - L2 LINE L2 -167 3146 2737 268 292 90 41 chr15 100859148 100859415 -521106 - L1M4 LINE L1 -1191 4955 4676 501 273 157 24 chr15 100861020 100861313 -519208 + L1ME4a LINE L1 5779 6110 -11 1150 203 141 13 chr15 100863716 100864022 -516499 - MER2 DNA MER2_type 0 345 1 234 296 124 32 chr15 100864391 100864461 -516060 - L1ME4a LINE L1 -1 6120 6058 2211 100 17 0 chr15 100864461 100864752 -515769 + AluSg SINE Alu 1 296 -14 234 296 124 32 chr15 100864752 100864931 -515590 - L1ME4a LINE L1 -63 6058 5848 827 116 78 0 chr15 100865031 100865160 -515361 - MER85 DNA T2_type 0 139 1 433 181 369 6 chr15 100866269 100866429 -514092 - MIR SINE MIR -25 237 20 198 178 22 44 chr15 100866643 100866688 -513833 - L2 LINE L2 -8 3264 3221 180 191 106 0 chr15 100866654 100866701 -513820 - MIR SINE MIR -11 251 200 * 448 200 59 37 chr15 100867218 100867353 -513168 + MER104 DNA Tc2 38 175 -5 778 112 72 46 chr15 100867560 100867712 -512809 + L1MB3 LINE L1 6028 6183 0 25 51 0 0 chr15 100867994 100868033 -512488 + AT_rich Low_complexity Low_complexity 1 39 0 231 327 75 66 chr15 100868369 100868595 -511926 + L2 LINE L2 2589 2816 -498 2428 84 0 19 chr15 100868601 100868912 -511609 - AluSg SINE Alu -5 305 1 1816 133 40 130 chr15 100868923 100869018 -511503 - THE1B LTR MaLR 0 364 262 2289 79 0 14 chr15 100869018 100869310 -511211 - AluY SINE Alu -23 288 1 1816 133 40 130 chr15 100869310 100869614 -510907 - THE1B LTR MaLR -102 262 1 273 310 138 0 chr15 100869790 100869906 -510615 + L2 LINE L2 3136 3267 -5 2210 93 0 0 chr15 100870986 100871265 -509256 - AluSg SINE Alu -31 279 1 313 275 60 28 chr15 100873135 100873353 -507168 - L1M4 LINE L1 -918 5228 5004 299 301 39 10 chr15 100874111 100874214 -506307 - L1ME3A LINE L1 0 6170 6065 529 181 38 0 chr15 100875301 100875406 -505115 - L1MA6 LINE L1 -10 6290 6182 257 81 0 0 chr15 100875407 100875444 -505077 + L1MA6 LINE L1 6138 6174 -126 460 95 189 0 chr15 100875625 100875699 -504822 + AluS SINE Alu 2 89 -223 283 350 0 17 chr15 100875802 100875922 -504599 + (CGGG)n Simple_repeat Simple_repeat 3 120 0 * 379 349 8 0 chr15 100875847 100875979 -504542 + (TGGA)n Simple_repeat Simple_repeat 2 134 0 180 219 0 0 chr15 100875986 100876027 -504494 + (TGGG)n Simple_repeat Simple_repeat 3 43 0 821 231 14 33 chr15 100876368 100876580 -503941 + MER3 DNA MER1_type 2 209 0 486 267 101 49 chr15 100876795 100877083 -503438 + MLT1J LTR MaLR 7 309 -202 198 103 0 0 chr15 100878005 100878034 -502487 + (CA)n Simple_repeat Simple_repeat 1 29 0 523 238 88 0 chr15 100878862 100879055 -501466 + L1MC4 LINE L1 6709 6918 -1124 235 217 67 0 chr15 100879244 100879304 -501217 + L1MD3 LINE L1 7080 7143 -852 215 226 39 0 chr15 100880035 100880137 -500384 + (CA)n Simple_repeat Simple_repeat 1 106 0 258 325 12 0 chr15 100880641 100880721 -499800 - MIR SINE MIR -105 157 77 259 277 24 0 chr15 100881428 100881511 -499010 - MIR SINE MIR -1 261 177 1802 199 42 9 chr15 100881517 100881854 -498667 + MER7A DNA MER2_type 1 346 0 628 271 0 22 chr15 100882156 100882337 -498184 + L1ME1 LINE L1 5296 5472 -694 2021 107 4 0 chr15 100882337 100882599 -497922 + AluSx SINE Alu 1 263 -49 26 0 0 0 chr15 100882681 100882707 -497814 + AT_rich Low_complexity Low_complexity 1 26 0 3118 194 69 5 chr15 100882707 100883363 -497158 + L1ME1 LINE L1 5464 6161 -5 21 0 0 0 chr15 100885688 100885709 -494812 + AT_rich Low_complexity Low_complexity 1 21 0 278 302 62 17 chr15 100885855 100886034 -494487 - L1MC4a LINE L1 -1830 5978 5792 993 154 10 53 chr15 100886144 100886187 -494334 - L1MB3 LINE L1 -4 6179 6136 2376 113 132 5 chr15 100886187 100886566 -493955 - MSTA LTR MaLR -1 427 1 993 154 10 53 chr15 100886566 100886730 -493791 - L1MB3 LINE L1 -47 6136 5981 313 171 24 49 chr15 100886733 100886815 -493706 - L1MB3 LINE L1 -123 6060 5981 282 191 22 45 chr15 100886811 100886900 -493621 - L1MB3 LINE L1 -116 6067 5981 * 283 202 22 45 chr15 100886896 100886985 -493536 - L1MB3 LINE L1 -116 6067 5981 275 202 22 45 chr15 100886981 100887070 -493451 - L1MB3 LINE L1 -116 6067 5981 * 282 191 22 45 chr15 100887066 100887155 -493366 - L1MB3 LINE L1 -116 6067 5981 * 3727 177 53 15 chr15 100887151 100887995 -492526 - L1MB3 LINE L1 -116 6067 5193 1411 207 31 65 chr15 100888034 100888245 -492276 - MLT1A2 LTR MaLR -5 369 175 2179 97 17 0 chr15 100888245 100888535 -491986 - AluSc SINE Alu -13 296 2 1411 207 31 65 chr15 100888535 100888705 -491816 - MLT1A2 LTR MaLR -199 175 1 550 251 28 104 chr15 100889511 100889722 -490799 + MER63A DNA MER1_type 12 206 -4 311 198 70 0 chr15 100890020 100890106 -490415 + LTR67 LTR ERVL 463 554 -3 335 196 145 36 chr15 100890933 100891071 -489450 + MIR SINE MIR 59 211 -51 1905 219 120 48 chr15 100891087 100891636 -488885 + MER97a DNA MER1_type? 14 623 -271 2096 85 0 17 chr15 100891636 100891930 -488591 + AluSg SINE Alu 1 289 -21 1905 219 120 48 chr15 100891930 100892064 -488457 + MER97a DNA MER1_type? 623 746 -148 1850 100 10 67 chr15 100892553 100892899 -487622 - AluSx SINE Alu 0 329 1 315 248 35 101 chr15 100894347 100894605 -485916 + L1MC5 LINE L1 7670 7910 -51 221 234 0 0 chr15 100894889 100894936 -485585 + (TG)n Simple_repeat Simple_repeat 1 47 0 317 284 6 0 chr15 100894947 100895116 -485405 + (TG)n Simple_repeat Simple_repeat 1 170 0 3256 129 27 27 chr15 100895802 100896329 -484192 + MER1A DNA MER1_type 1 527 0 2262 66 0 3 chr15 100896851 100897140 -483381 + AluY SINE Alu 22 309 -2 22 0 0 0 chr15 100897144 100897166 -483355 + AT_rich Low_complexity Low_complexity 1 22 0 773 206 144 0 chr15 100897214 100897408 -483113 - MER58A DNA MER1_type 0 224 3 4204 199 46 9 chr15 100897547 100898436 -482085 + MER63C DNA MER1_type 9 930 0 447 291 79 12 chr15 100898907 100899072 -481449 + L1ME LINE L1 5255 5430 -732 2175 96 17 0 chr15 100899072 100899374 -481147 + AluSg SINE Alu 1 307 -3 229 284 74 11 chr15 100900498 100900593 -479928 + MIR SINE MIR 90 190 -72 914 253 70 43 chr15 100902820 100903192 -477329 - L1ME4a LINE L1 -210 5911 5530 2284 84 0 0 chr15 100903315 100903612 -476909 + AluSx SINE Alu 6 302 -10 23 0 0 0 chr15 100903765 100903788 -476733 + AT_rich Low_complexity Low_complexity 1 23 0 1585 149 7 15 chr15 100904359 100904628 -475893 + AluSx SINE Alu 38 304 -8 340 211 40 0 chr15 100904694 100904770 -475751 + LTR33 LTR ERVL 99 177 -344 1233 270 30 30 chr15 100904944 100905176 -475345 + L1M4 LINE L1 2452 2683 -3463 2049 96 44 0 chr15 100905176 100905469 -475052 - AluSg SINE Alu -4 306 1 1233 270 30 30 chr15 100905469 100905874 -474647 + L1M4 LINE L1 2682 3089 -3057 2248 93 7 7 chr15 100906425 100906735 -473786 - AluSx SINE Alu -2 310 1 830 126 0 16 chr15 100906739 100906866 -473655 - FLAM_C SINE Alu -18 125 1 181 29 29 57 chr15 100908518 100908553 -471968 + (CGG)n Simple_repeat Simple_repeat 3 36 0 1105 167 5 19 chr15 100909514 100909730 -470791 + AluJo SINE Alu 92 304 -8 1942 99 0 4 chr15 100909754 100910026 -470495 + AluSx SINE Alu 5 275 -37 183 80 0 0 chr15 100910029 100910054 -470467 + (T)n Simple_repeat Simple_repeat 1 25 0 228 355 21 0 chr15 100910315 100910408 -470113 - MER5A DNA MER1_type -66 123 29 318 317 84 14 chr15 100912475 100912617 -467904 - MIR SINE MIR -96 166 15 398 273 109 0 chr15 100914052 100914180 -466341 - MER58C DNA MER1_type -16 199 58 278 299 201 0 chr15 100915137 100915271 -465250 - MIR SINE MIR -10 252 92 1955 116 30 23 chr15 100915376 100915679 -464842 + AluSp SINE Alu 1 305 -8 676 220 0 0 chr15 100916492 100916610 -463911 - FLAM_C SINE Alu -15 118 1 226 274 113 9 chr15 100916823 100916929 -463592 + L1ME4a LINE L1 5984 6100 -21 1705 139 68 0 chr15 100917105 100917385 -463136 - AluSx SINE Alu -13 299 1 31 0 0 0 chr15 100917395 100917426 -463095 + AT_rich Low_complexity Low_complexity 1 31 0 2175 93 7 13 chr15 100917511 100917812 -462709 - AluY SINE Alu -12 299 1 24 53 0 0 chr15 100918205 100918243 -462278 + AT_rich Low_complexity Low_complexity 1 38 0 208 280 0 0 chr15 100921116 100921166 -459355 - L2 LINE L2 0 3313 3264 5778 172 55 12 chr15 100921593 100922987 -457534 - L1MC1 LINE L1 -2 6331 4873 243 241 172 11 chr15 100923777 100923864 -456657 + Charlie8 DNA MER1_type 85 185 -2232 243 0 0 0 chr15 100925838 100925865 -454656 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2042 108 3 0 chr15 100925867 100926154 -454367 - AluSx SINE Alu -24 288 1 1817 158 6 6 chr15 100926519 100926830 -453691 - AluJb SINE Alu -1 311 1 277 261 0 15 chr15 100926834 100926899 -453622 - MIR SINE MIR -120 142 79 1251 143 0 45 chr15 100926997 100927255 -453266 - AluJb SINE Alu 0 317 70 198 0 0 0 chr15 100927630 100927652 -452869 + (A)n Simple_repeat Simple_repeat 1 22 0 25 0 0 0 chr15 100928506 100928531 -451990 + AT_rich Low_complexity Low_complexity 1 25 0 1386 158 120 11 chr15 100928702 100928968 -451553 + AluSg SINE Alu 1 295 -15 929 244 140 16 chr15 100929651 100930015 -450506 - HAL1 LINE L1 -660 1847 1439 570 271 129 40 chr15 100930175 100930732 -449789 - HAL1 LINE L1 -1321 1186 580 2323 182 17 2 chr15 100930865 100931272 -449249 + Tigger2 DNA MER2_type 337 749 -1969 1573 133 28 16 chr15 100931331 100931586 -448935 + Tigger2 DNA MER2_type 2461 2718 0 184 307 68 0 chr15 100933621 100933709 -446812 - L2 LINE L2 -16 3256 3163 22 56 0 0 chr15 100935988 100936024 -444497 + AT_rich Low_complexity Low_complexity 1 36 0 1503 130 0 9 chr15 100936526 100936756 -443765 - AluSg/x SINE Alu 0 310 83 1286 143 0 22 chr15 100941488 100941711 -438810 - AluSx SINE Alu 0 312 95 824 145 0 0 chr15 100941726 100941843 -438678 - AluSx SINE Alu -194 118 2 599 258 180 0 chr15 100944540 100944718 -435803 - MER63A DNA MER1_type 0 210 1 325 245 78 10 chr15 100944770 100944872 -435649 + MIR SINE MIR 79 187 -75 585 290 89 18 chr15 100945820 100946044 -434477 - MIR SINE MIR 0 262 23 1019 272 40 87 chr15 100946285 100946837 -433684 + L1ME LINE L1 6 531 -5539 283 271 24 7 chr15 100946989 100947091 -433430 + L1ME LINE L1 522 622 -5448 389 247 7 28 chr15 100947246 100947389 -433132 + L1ME LINE L1 648 773 -5297 1557 118 5 0 chr15 100947389 100947610 -432911 - AluSq SINE Alu -91 222 1 812 172 0 0 chr15 100947624 100947746 -432775 - FLAM_C SINE Alu -20 123 2 475 259 190 15 chr15 100947869 100948143 -432378 + L1ME4a LINE L1 5790 6111 -10 2240 69 38 0 chr15 100948258 100948549 -431972 + AluY SINE Alu 1 302 -9 1797 150 81 65 chr15 100948594 100948861 -431660 - MLT1C LTR MaLR -13 454 176 5335 92 10 1 chr15 100948861 100949546 -430975 - LTR8 LTR ERV1 0 691 1 1797 150 81 65 chr15 100949546 100949725 -430796 - MLT1C LTR MaLR -291 176 1 240 322 49 28 chr15 100950919 100951062 -429459 + MER5B DNA MER1_type 3 148 -30 533 121 0 0 chr15 100951087 100951170 -429351 - L1MB3 LINE L1 0 6183 6101 1197 253 14 36 chr15 100951183 100951546 -428975 + MLT1A2 LTR MaLR 20 374 0 1688 194 92 28 chr15 100951548 100951940 -428581 - L1MB3 LINE L1 -82 6101 5735 1989 128 14 3 chr15 100951940 100952236 -428285 - AluSx SINE Alu -2 310 12 1688 194 92 28 chr15 100952236 100952590 -427931 - L1MB3 LINE L1 -448 5735 5283 858 223 62 152 chr15 100952822 100953382 -427139 + MLT1K LTR MaLR 79 588 0 247 270 14 14 chr15 100954785 100954859 -425662 - MIR SINE MIR -15 247 174 244 163 82 0 chr15 100955110 100955159 -425362 + MIR SINE MIR 91 143 -65 181 296 78 49 chr15 100955538 100955680 -424841 - L2 LINE L2 -50 3222 3077 2341 90 0 0 chr15 100955932 100956243 -424278 + AluY SINE Alu 1 311 0 2078 118 0 3 chr15 100957370 100957674 -422847 - AluSg SINE Alu -7 303 1 1296 257 56 15 chr15 100957689 100958098 -422423 + L1MB3 LINE L1 5758 6183 0 2070 108 7 0 chr15 100958133 100958428 -422093 + AluSx SINE Alu 1 297 -15 475 329 2 2 chr15 100959051 100959516 -421005 + (TG)n Simple_repeat Simple_repeat 1 464 0 240 0 49 24 chr15 100959951 100959992 -420529 + (TAAAA)n Simple_repeat Simple_repeat 5 46 0 860 286 77 50 chr15 100959996 100960409 -420112 - MLT1J1 LTR MaLR 0 446 23 323 219 175 9 chr15 100960409 100960523 -419998 + MER94 DNA DNA 1 133 -1 281 307 71 45 chr15 100960564 100960831 -419690 - L1MC4a LINE L1 -1862 5929 5656 2269 94 7 0 chr15 100960858 100961166 -419355 + AluSx SINE Alu 1 310 -2 755 200 32 5 chr15 100962232 100962417 -418104 - L1MA6 LINE L1 -276 6024 5835 304 328 0 33 chr15 100962436 100962558 -417963 - L1MC4a LINE L1 -605 5540 5423 322 313 91 30 chr15 100963408 100963606 -416915 - L1MC4a LINE L1 -2225 3904 3695 2034 124 0 7 chr15 100963745 100964044 -416477 + AluSg1 SINE Alu 3 299 -10 708 340 92 27 chr15 100964187 100964525 -415996 - L1MC4a LINE L1 -4928 1191 811 2033 138 3 0 chr15 100964525 100964822 -415699 - AluSx SINE Alu -14 298 1 708 340 92 27 chr15 100964822 100964962 -415559 - L1MC4a LINE L1 -5308 811 682 800 261 93 24 chr15 100965244 100965720 -414801 - MLT1G1 LTR MaLR 0 555 1 200 247 123 0 chr15 100967292 100967373 -413148 + MIR3 SINE MIR 107 197 -11 1690 266 89 8 chr15 100968179 100968693 -411828 - MLT1G LTR MaLR 0 590 35 599 158 8 0 chr15 100969622 100969749 -410772 + (CA)n Simple_repeat Simple_repeat 1 128 0 305 336 22 0 chr15 100971063 100971200 -409321 - MIR SINE MIR -109 153 14 200 250 0 0 chr15 100973007 100973051 -407470 - MIR SINE MIR -58 150 107 2268 61 10 3 chr15 100973185 100973481 -407040 + AluSp SINE Alu 1 298 -15 1723 158 3 37 chr15 100974533 100974831 -405690 + AluJb SINE Alu 5 292 -20 325 265 88 7 chr15 100974873 100975009 -405512 - L1ME4a LINE L1 -52 6069 5923 387 60 0 0 chr15 100976559 100976609 -403912 + (CATA)n Simple_repeat Simple_repeat 2 51 0 367 256 11 17 chr15 100976803 100976983 -403538 + (TG)n Simple_repeat Simple_repeat 2 180 0 277 267 11 17 chr15 100977002 100977182 -403339 + (TG)n Simple_repeat Simple_repeat 2 180 0 310 257 11 17 chr15 100977205 100977384 -403137 + (TG)n Simple_repeat Simple_repeat 2 179 0 304 298 62 65 chr15 100977842 100978211 -402310 - MLT1I LTR MaLR -4 405 38 2085 113 0 3 chr15 100978320 100978622 -401899 + AluSx SINE Alu 1 301 -11 261 240 47 93 chr15 100979323 100979452 -401069 - MLT1J LTR MaLR 0 511 389 264 216 34 5 chr15 100979554 100979656 -400865 - MLT1J1 LTR MaLR -296 215 71 3624 48 0 15 chr15 100980813 100981268 -399253 - LTR7 LTR ERV1 -2 448 1 2384 102 39 13 chr15 100981268 100981650 -398871 - HERVH LTR ERV1 0 7713 7322 1288 123 43 0 chr15 100981648 100981859 -398662 - HERVH LTR ERV1 -1894 5819 5600 * 4269 130 0 2 chr15 100981860 100982523 -397998 - HERVH LTR ERV1 -2564 5149 4488 3302 85 0 6 chr15 100982525 100983030 -397491 - HERVH LTR ERV1 -3720 3993 3492 848 147 7 0 chr15 100983020 100983170 -397351 - HERVH LTR ERV1 -4423 3290 3140 * 18797 102 7 12 chr15 100983164 100986145 -394376 - HERVH LTR ERV1 -4726 2987 22 3273 80 23 7 chr15 100986182 100986620 -393901 - LTR7 LTR ERV1 -4 446 2 557 298 54 10 chr15 100986659 100986954 -393567 - L1MC4a LINE L1 -1942 5866 5559 313 354 139 22 chr15 100987093 100987422 -393099 + L2 LINE L2 2856 3243 -70 2163 79 0 4 chr15 100987422 100987732 -392789 + AluSx SINE Alu 7 315 0 313 354 139 22 chr15 100987732 100987805 -392716 + L2 LINE L2 3243 3306 -7 345 319 101 29 chr15 100988023 100988161 -392360 - L1MC4a LINE L1 -2392 5416 5269 806 180 20 7 chr15 100988290 100988440 -392081 - FRAM SINE Alu -5 171 20 234 0 0 0 chr15 100988772 100988798 -391723 + (A)n Simple_repeat Simple_repeat 1 26 0 387 0 0 0 chr15 100991642 100991685 -388836 + (CA)n Simple_repeat Simple_repeat 2 44 0 339 341 102 19 chr15 100996690 100996895 -383626 - L1ME4a LINE L1 -28 6093 5872 1861 105 8 4 chr15 100997120 100997378 -383143 - AluSc SINE Alu -50 259 1 680 227 96 23 chr15 100999195 100999415 -381106 - L1MC5 LINE L1 -1114 6847 6612 1798 161 0 26 chr15 100999695 100999999 -380522 - AluJb SINE Alu -16 296 1 754 333 108 12 chr15 101000145 101000563 -379958 + L2 LINE L2 759 1216 -2098 740 219 0 0 chr15 101000584 101000712 -379809 - FLAM_A SINE Alu -2 131 4 213 413 61 5 chr15 101000718 101000914 -379607 + L2 LINE L2 1721 1927 -1387 863 197 0 0 chr15 101001391 101001538 -378983 - FAM SINE Alu -37 148 2 296 296 0 6 chr15 101002383 101002555 -377966 + (TCCA)n Simple_repeat Simple_repeat 2 172 0 206 289 0 0 chr15 101002571 101002623 -377898 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 264 77 0 0 chr15 101002658 101002697 -377824 + (TCCA)n Simple_repeat Simple_repeat 1 39 0 2092 129 0 16 chr15 101004272 101004582 -375939 - AluSx SINE Alu -7 305 1 1474 195 27 7 chr15 101004834 101005126 -375395 + AluJb SINE Alu 1 298 -14 22 35 0 0 chr15 101005654 101005683 -374838 + GC_rich Low_complexity Low_complexity 1 29 0 268 342 60 13 chr15 101006276 101006425 -374096 + MIR SINE MIR 15 170 -92 223 278 0 0 chr15 101009719 101009773 -370748 + MIR SINE MIR 83 136 -126 548 292 116 20 chr15 101010859 101011136 -369385 - HAL1b LINE L1 0 6121 1075 292 253 20 9 chr15 101011437 101011551 -368970 - L1ME LINE L1 -697 5473 5359 856 210 32 16 chr15 101012011 101012197 -368324 - MER5A DNA MER1_type 0 189 1 532 210 50 94 chr15 101012350 101012531 -367990 - MER5B DNA MER1_type -1 177 5 764 204 76 0 chr15 101012547 101012719 -367802 + MER5A DNA MER1_type 5 189 0 300 361 21 56 chr15 101013275 101013560 -366961 + L1M4 LINE L1 2268 2542 -3604 312 240 0 10 chr15 101015270 101015366 -365155 - MIR SINE MIR -43 219 125 249 276 40 0 chr15 101016381 101016457 -364064 + L1MEd LINE L1 563 641 -5478 311 287 43 0 chr15 101016459 101016553 -363968 - HsTC2 DNA Tc2 -1793 105 8 421 319 115 21 chr15 101016646 101016837 -363684 - MIR SINE MIR -8 254 46 295 314 52 33 chr15 101018991 101019144 -361377 - MIR SINE MIR -68 194 39 740 75 0 0 chr15 101019929 101020023 -360498 - AluS SINE Alu -218 94 1 302 195 0 26 chr15 101020130 101020207 -360314 + HsTC2 DNA Tc2 1823 1897 -1 428 293 85 39 chr15 101021316 101021818 -358703 - MLT1L LTR MaLR -6 609 49 251 145 96 0 chr15 101021948 101022031 -358490 + GA-rich Low_complexity Low_complexity 2 92 0 2038 298 166 32 chr15 101022970 101024269 -356252 + L2 LINE L2 1313 2786 -528 231 296 14 14 chr15 101024335 101024406 -356115 - L2 LINE L2 -225 3047 2977 385 348 13 45 chr15 101024530 101024754 -355767 - L2 LINE L2 -348 2966 2750 374 308 33 0 chr15 101026166 101026286 -354235 + MIR SINE MIR 48 171 -91 570 274 139 19 chr15 101027320 101027528 -352993 + MIR SINE MIR 9 241 -21 2319 44 0 69 chr15 101029729 101030048 -350473 + AluY SINE Alu 1 297 -14 945 177 5 26 chr15 101030149 101030341 -350180 - MER53 DNA DNA -1 188 1 218 165 10 31 chr15 101033349 101033446 -347075 + (CA)n Simple_repeat Simple_repeat 1 95 0 356 307 75 33 chr15 101033765 101033977 -346544 - HAL1 LINE L1 -61 2446 2226 300 305 11 0 chr15 101034196 101034291 -346230 - HAL1 LINE L1 -341 2166 2071 638 291 96 20 chr15 101034492 101034898 -345623 - HAL1 LINE L1 -788 1719 1283 960 280 94 16 chr15 101034902 101035391 -345130 - HAL1 LINE L1 0 2507 1981 1608 230 62 50 chr15 101035410 101036070 -344451 - HAL1 LINE L1 -814 1693 1026 1732 216 17 28 chr15 101036173 101036705 -343816 - L1ME1 LINE L1 -75 6103 5579 1078 229 151 92 chr15 101036705 101037207 -343314 - MLT1E LTR MaLR 0 593 22 994 233 27 8 chr15 101037227 101037446 -343075 - L1ME1 LINE L1 -577 5587 5361 1496 132 9 18 chr15 101037446 101037673 -342848 - AluSx SINE Alu -87 225 1 994 233 27 8 chr15 101037673 101037715 -342806 - L1ME1 LINE L1 -803 5361 5321 318 50 0 0 chr15 101037732 101037772 -342749 + (TA)n Simple_repeat Simple_repeat 2 41 0 1737 177 3 3 chr15 101037833 101038166 -342355 + AluJo SINE Alu 1 333 0 3539 216 48 78 chr15 101038179 101039469 -341052 - L1ME1 LINE L1 -849 5297 4046 4845 157 31 12 chr15 101039602 101040069 -340452 - L1MC1 LINE L1 -5 6328 5871 1463 213 59 0 chr15 101040069 101040185 -340336 + AluJo SINE Alu 1 109 -203 315 0 0 0 chr15 101040185 101040220 -340301 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 1463 213 59 0 chr15 101040220 101040390 -340131 + AluJo SINE Alu 109 304 -8 4845 157 31 12 chr15 101040390 101040836 -339685 - L1MC1 LINE L1 -462 5871 5398 1678 257 56 8 chr15 101040835 101040955 -339566 - L1ME1 LINE L1 -2174 3972 3859 * 2068 147 0 25 chr15 101040955 101041275 -339246 - AluJb SINE Alu 0 312 1 1678 257 56 8 chr15 101041275 101041656 -338865 - L1ME1 LINE L1 -2287 3859 3447 1554 137 140 6 chr15 101041651 101041979 -338542 - L1MB4 LINE L1 0 6180 5809 * 1514 233 69 23 chr15 101041985 101042633 -337888 - L1ME1 LINE L1 -2700 3446 2769 4107 172 29 21 chr15 101042635 101043424 -337097 - L1MA7 LINE L1 -6 6285 5488 2173 134 0 0 chr15 101043424 101043723 -336798 - AluY SINE Alu -12 299 1 4107 172 29 21 chr15 101043723 101043776 -336745 - L1MA7 LINE L1 -803 5488 5437 1865 194 5 0 chr15 101043783 101044165 -336356 - L1MA7 LINE L1 -2171 3975 3592 * 3157 189 22 35 chr15 101044160 101044921 -335600 + L1MA7 LINE L1 2811 3563 -2583 2224 106 7 0 chr15 101044921 101045213 -335308 + AluSx SINE Alu 18 311 -1 3157 189 22 35 chr15 101045213 101045255 -335266 + L1 LINE L1 3563 3604 -2542 1436 252 26 43 chr15 101045248 101045827 -334694 - L1ME1 LINE L1 -3352 2794 2226 * 436 302 168 15 chr15 101045833 101046161 -334360 - HAL1 LINE L1 -2127 380 3 271 254 110 8 chr15 101046191 101046309 -334212 - HAL1 LINE L1 -1220 1287 1158 240 227 45 0 chr15 101047044 101047110 -333411 - HAL1 LINE L1 -2438 69 1 385 206 98 71 chr15 101048833 101049017 -331504 - L1ME3A LINE L1 -10 6160 5972 242 140 0 40 chr15 101050285 101050335 -330186 + Alu SINE Alu 248 295 -6 353 341 32 8 chr15 101050341 101050464 -330057 - HAL1 LINE L1 -155 2352 2227 2468 65 0 0 chr15 101050925 101051217 -329304 + AluY SINE Alu 1 292 -19 461 228 22 66 chr15 101051776 101051885 -328636 + MLT1A2 LTR MaLR 1 104 -270 2363 112 0 0 chr15 101051885 101052190 -328331 + AluSx SINE Alu 1 305 -7 461 228 22 66 chr15 101052190 101052216 -328305 + MLT1A2 LTR MaLR 104 130 -244 234 0 0 0 chr15 101052253 101052279 -328242 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 271 337 20 0 chr15 101052738 101052836 -327685 - MIR SINE MIR -54 208 109 1826 133 56 0 chr15 101053507 101053807 -326714 - AluJo SINE Alu 0 315 1 207 190 0 0 chr15 101054398 101054456 -326065 + GA-rich Low_complexity Low_complexity 2 59 0 2231 107 0 0 chr15 101055913 101056202 -324319 - AluSx SINE Alu -23 289 1 1206 178 4 4 chr15 101057965 101058196 -322325 - L1MB3 LINE L1 0 6183 5953 287 215 25 0 chr15 101058196 101058275 -322246 + CT-rich Low_complexity Low_complexity 3 83 0 1219 194 2 0 chr15 101058276 101058314 -322207 - L1MB3 LINE L1 -208 5975 5939 2370 90 3 10 chr15 101058314 101058626 -321895 - AluSq SINE Alu -3 310 1 1219 194 2 0 chr15 101058626 101058850 -321671 - L1MB3 LINE L1 -244 5939 5753 225 65 0 0 chr15 101059981 101060012 -320509 + (GGAA)n Simple_repeat Simple_repeat 1 31 0 30 69 0 0 chr15 101060284 101060342 -320179 + AT_rich Low_complexity Low_complexity 1 58 0 624 270 77 10 chr15 101060440 101060636 -319885 - MIR SINE MIR -2 260 52 189 309 50 93 chr15 101061053 101061312 -319209 - L2 LINE L2 -21 3251 3004 391 309 63 49 chr15 101061334 101061684 -318837 - L2 LINE L2 -412 2902 2548 582 271 125 63 chr15 101061980 101062586 -317935 - L2 LINE L2 -1318 1996 1353 613 222 31 44 chr15 101064847 101065072 -315449 + L1ME3 LINE L1 5938 6159 -3 822 262 76 30 chr15 101065116 101065433 -315088 + MLT1G1 LTR MaLR 3 307 -260 356 235 156 15 chr15 101065475 101065619 -314902 + MLT1G1 LTR MaLR 384 593 0 783 152 36 7 chr15 101066684 101066822 -313699 - FLAM_C SINE Alu 0 143 2 223 339 98 38 chr15 101068141 101068377 -312144 + L2 LINE L2 3014 3263 -9 205 290 0 0 chr15 101068768 101068830 -311691 + C-rich Low_complexity Low_complexity 4 65 0 191 355 72 0 chr15 101069759 101069911 -310610 - MIR SINE MIR -98 164 2 421 272 75 42 chr15 101072070 101072326 -308195 + L1ME LINE L1 5357 5605 -516 285 283 19 19 chr15 101072343 101072449 -308072 + L1ME LINE L1 59 164 -5955 530 229 9 0 chr15 101072779 101072888 -307633 - MER81 DNA DNA 0 114 5 1449 216 22 68 chr15 101072888 101073301 -307220 + MSTD LTR MaLR 1 394 -2 608 313 137 38 chr15 101073397 101073841 -306680 + L1ME LINE L1 601 1088 -5031 677 339 14 0 chr15 101073843 101074369 -306152 + L1ME LINE L1 1153 1731 -4579 1152 247 93 36 chr15 101074420 101074922 -305599 + L1ME LINE L1 2376 2917 -3212 2398 72 3 0 chr15 101074922 101075215 -305306 + AluY SINE Alu 1 294 -17 1152 247 93 36 chr15 101075215 101075291 -305230 + L1ME LINE L1 2917 2987 -3142 1280 166 28 4 chr15 101075326 101075579 -304942 + L1MB3 LINE L1 5897 6155 -28 359 253 45 28 chr15 101075598 101075776 -304745 + L1ME LINE L1 3026 3206 -2923 872 251 18 94 chr15 101075782 101076165 -304356 - LTR16A LTR ERVL -1 449 96 1401 285 87 30 chr15 101076303 101076881 -303640 + L1ME LINE L1 3360 3982 -2147 3456 87 72 58 chr15 101076881 101077466 -303055 + MER4A LTR ERV1 4 596 -4 1401 285 87 30 chr15 101077466 101077551 -302970 + L1ME LINE L1 3982 4061 -2068 228 319 136 0 chr15 101079237 101079406 -301115 - L1ME LINE L1 -188 5933 5742 1446 129 30 0 chr15 101079537 101079739 -300782 - AluSx SINE Alu -92 220 13 1115 240 73 41 chr15 101079750 101080187 -300334 - MLT1D LTR MaLR -54 451 1 510 290 13 19 chr15 101080191 101080346 -300175 - MIR SINE MIR -2 260 107 22 35 0 0 chr15 101080731 101080760 -299761 + AT_rich Low_complexity Low_complexity 1 29 0 864 116 35 85 chr15 101081054 101081099 -299422 + MER53 DNA DNA 1 47 -142 2380 79 0 13 chr15 101081099 101081402 -299119 - AluSq SINE Alu -14 299 1 864 116 35 85 chr15 101081402 101081555 -298966 + MER53 DNA DNA 47 189 0 199 0 0 0 chr15 101081945 101081967 -298554 + (TTTA)n Simple_repeat Simple_repeat 3 180 0 1966 134 0 3 chr15 101081967 101082251 -298270 - AluSq SINE Alu -1 304 1 2113 100 4 0 chr15 101083943 101084222 -296299 + AluSq SINE Alu 16 295 -18 519 264 0 14 chr15 101085233 101085373 -295148 - L1ME1 LINE L1 -5 6161 6024 * 767 281 36 46 chr15 101085368 101085782 -294739 - L1ME LINE L1 -570 5600 5197 603 283 84 34 chr15 101085813 101086195 -294326 - LTR33 LTR ERVL -116 405 5 533 220 18 18 chr15 101086827 101086993 -293528 - MIR SINE MIR -54 208 48 3729 186 36 0 chr15 101089428 101090147 -290374 + L1MB5 LINE L1 5415 6159 -15 2547 81 0 0 chr15 101090219 101090529 -289992 - AluSq SINE Alu -3 310 1 1224 128 0 0 chr15 101091263 101091435 -289086 - AluSc SINE Alu -2 307 136 247 288 55 0 chr15 101091875 101091948 -288573 + LTR67 LTR ERVL 114 190 -367 480 296 69 20 chr15 101092078 101092281 -288240 + LTR67 LTR ERVL 345 557 0 30 0 0 0 chr15 101092583 101092613 -287908 + AT_rich Low_complexity Low_complexity 1 30 0 677 179 0 0 chr15 101092737 101092854 -287667 + L1PA14 LINE L1 6044 6160 -1 973 168 106 130 chr15 101093731 101094123 -286398 + MER54B LTR ERVL 451 738 -55 1537 124 53 63 chr15 101094123 101094422 -286099 - AluJo SINE Alu -16 296 1 973 168 106 130 chr15 101094422 101094477 -286044 + MER54B LTR ERVL 738 793 0 534 284 37 32 chr15 101095683 101095873 -284648 + HAL1 LINE L1 1560 1750 -757 * 1102 184 95 0 chr15 101095845 101096230 -284291 + L1MB7 LINE L1 5641 6168 -16 1557 242 101 38 chr15 101096293 101096978 -283543 + HAL1 LINE L1 1765 2492 -15 3240 151 44 15 chr15 101097094 101097682 -282839 - MER6A DNA MER2_type 0 605 1 2265 105 3 0 chr15 101098104 101098410 -282111 + AluSx SINE Alu 1 307 -5 284 167 14 0 chr15 101098651 101098723 -281798 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 27 0 0 0 chr15 101098890 101098917 -281604 + AT_rich Low_complexity Low_complexity 1 27 0 805 303 190 10 chr15 101098931 101099432 -281089 + MLT1L LTR MaLR 23 613 -2 659 305 94 46 chr15 101099433 101099931 -280590 + HAL1 LINE L1 1379 1900 -607 1677 131 0 110 chr15 101100731 101101066 -279455 - AluSg1 SINE Alu -11 298 1 434 185 199 7 chr15 101101078 101101200 -279321 - L1MC2 LINE L1 0 6344 6186 216 86 0 0 chr15 101101200 101101235 -279286 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 434 185 199 7 chr15 101101235 101101263 -279258 - L1MC2 LINE L1 -158 6186 6165 470 248 110 62 chr15 101101477 101101752 -278769 + L1MC/D LINE L1 4943 5203 -1015 2186 93 4 0 chr15 101101752 101102060 -278461 + AluY SINE Alu 1 309 0 2168 117 21 48 chr15 101102060 101102210 -278311 + L1MC1 LINE L1 5967 6119 -214 2101 125 3 7 chr15 101102210 101102505 -278016 + AluSx SINE Alu 1 294 -18 2168 117 21 48 chr15 101102505 101102731 -277790 + L1MC1 LINE L1 6119 6333 0 470 248 110 62 chr15 101102731 101102972 -277549 + L1MC/D LINE L1 5202 5475 -743 22 0 0 0 chr15 101103536 101103558 -276963 + AT_rich Low_complexity Low_complexity 1 22 0 2122 124 3 10 chr15 101103739 101104046 -276475 - AluSx SINE Alu -7 305 1 223 245 20 0 chr15 101105311 101105360 -275161 + (TG)n Simple_repeat Simple_repeat 2 51 0 198 118 0 0 chr15 101105425 101105459 -275062 + (GA)n Simple_repeat Simple_repeat 2 35 0 311 199 103 103 chr15 101105659 101105805 -274716 - MER46C DNA MER2_type -185 153 8 247 246 45 97 chr15 101106084 101106218 -274303 - MLT1K LTR MaLR -8 580 454 274 341 0 0 chr15 101106294 101106376 -274145 - MLT1K LTR MaLR -396 192 111 201 156 0 0 chr15 101107894 101107926 -272595 + (CGTG)n Simple_repeat Simple_repeat 3 34 0 279 0 0 0 chr15 101107926 101107957 -272564 + (CA)n Simple_repeat Simple_repeat 1 31 0 400 298 27 53 chr15 101108191 101108379 -272142 + MLT1L LTR MaLR 195 377 -238 5549 157 10 56 chr15 101108804 101109922 -270599 - L1MD1 LINE L1 0 6636 5561 3007 75 2 0 chr15 101109922 101110320 -270201 - L1PA8 LINE L1 0 6172 5774 5549 157 10 56 chr15 101110320 101110405 -270116 - L1MD1 LINE L1 -1075 5561 5474 840 203 65 0 chr15 101110420 101110573 -269948 + AluJb SINE Alu 136 298 -14 4687 233 36 40 chr15 101110586 101110764 -269757 - L1MD1 LINE L1 -1082 5458 5281 632 171 16 39 chr15 101110764 101110893 -269628 - FLAM_C SINE Alu -7 126 1 4687 233 36 40 chr15 101110893 101112309 -268212 - L1MD1 LINE L1 -1259 5281 3870 884 265 122 40 chr15 101112309 101112687 -267834 + L1MC1 LINE L1 20 428 -5998 * 6339 207 81 42 chr15 101112665 101113253 -267268 + L1MC1 LINE L1 3106 3670 -2943 2178 120 0 19 chr15 101113253 101113569 -266952 + AluSx SINE Alu 1 310 -2 6339 207 81 42 chr15 101113569 101113975 -266546 + L1MC1 LINE L1 3670 4059 -2554 2081 139 0 0 chr15 101113975 101114290 -266231 + AluSx SINE Alu 1 312 0 6339 207 81 42 chr15 101114290 101114993 -265528 + L1MC1 LINE L1 4059 4733 -1880 2239 112 0 7 chr15 101114993 101115298 -265223 + AluSq SINE Alu 1 303 -10 6339 207 81 42 chr15 101115298 101116943 -263578 + L1MC1 LINE L1 4733 6595 -18 3714 228 33 67 chr15 101116955 101118461 -262060 - L1MD1 LINE L1 -2646 3894 2453 * 11526 175 15 12 chr15 101118454 101118510 -262011 - L1PB1 LINE L1 0 6867 6813 2554 53 3 0 chr15 101118510 101118813 -261708 - AluY SINE Alu -7 304 1 11526 175 15 12 chr15 101118813 101120502 -260019 - L1PB1 LINE L1 -54 6813 5106 234 0 0 0 chr15 101120502 101120528 -259993 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 11526 175 15 12 chr15 101120528 101122075 -258446 - L1PB1 LINE L1 -1761 5106 3565 3186 73 41 5 chr15 101122089 101122560 -257961 - L1PB1 LINE L1 -4007 2855 2318 872 147 0 25 chr15 101122557 101122720 -257801 + L1 LINE L1 3641 3799 -2347 * 6634 104 16 16 chr15 101122740 101123844 -256677 - L1PBa LINE L1 -4546 2317 995 1112 170 0 0 chr15 101123844 101124038 -256483 - L1PBa LINE L1 -6669 194 1 2250 204 33 43 chr15 101124055 101124654 -255867 - L1MDa LINE L1 -4073 2467 1875 3909 165 17 12 chr15 101124658 101125320 -255201 + LTR51 LTR ERV1 7 671 0 4953 206 77 30 chr15 101125345 101126721 -253800 - L1MDa LINE L1 -4662 1878 259 192 40 0 0 chr15 101126721 101126746 -253775 + (TTG)n Simple_repeat Simple_repeat 3 27 0 4953 206 77 30 chr15 101126746 101126990 -253531 - L1MDa LINE L1 -6281 259 28 24 32 0 0 chr15 101127292 101127323 -253198 + AT_rich Low_complexity Low_complexity 1 31 0 1219 296 78 3 chr15 101127358 101127730 -252791 + MER69 DNA AcHobo 37 436 -2090 1073 188 53 69 chr15 101127724 101127779 -252742 + MER69 DNA AcHobo 1919 1973 -553 * 2077 96 11 4 chr15 101127779 101128111 -252410 + AluSx SINE Alu 1 334 0 1073 188 53 69 chr15 101128111 101128291 -252230 + MER69 DNA AcHobo 1973 2154 -372 2097 123 3 3 chr15 101128291 101128576 -251945 + AluSq SINE Alu 1 285 -28 201 39 0 0 chr15 101128576 101128602 -251919 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 1073 188 53 69 chr15 101128602 101128683 -251838 + MER69 DNA AcHobo 2152 2233 -293 25 0 0 0 chr15 101128724 101128749 -251772 + AT_rich Low_complexity Low_complexity 1 25 0 532 196 74 14 chr15 101128760 101128908 -251613 + MER69 DNA AcHobo 2370 2526 0 248 273 47 23 chr15 101128948 101129076 -251445 - LTR67 LTR ERVL -7 550 420 993 273 166 19 chr15 101130402 101131087 -249434 + L2 LINE L2 1379 2164 -1150 1062 170 81 30 chr15 101131097 101131332 -249189 + MLT1F1 LTR MaLR 313 559 -8 1560 184 18 21 chr15 101131485 101131768 -248753 + AluJo SINE Alu 1 282 -30 21 0 0 0 chr15 101131768 101131789 -248732 + AT_rich Low_complexity Low_complexity 1 21 0 450 251 68 49 chr15 101132170 101132333 -248188 + MER117 DNA MER1_type 6 171 -26 2063 126 0 28 chr15 101132539 101132856 -247665 + AluSx SINE Alu 1 308 -4 1608 198 45 90 chr15 101133252 101133302 -247219 + MER63C DNA MER1_type 1 52 -1008 432 0 0 0 chr15 101133302 101133350 -247171 + (TG)n Simple_repeat Simple_repeat 1 48 0 1608 198 45 90 chr15 101133350 101133768 -246753 + MER63C DNA MER1_type 52 448 -482 2124 196 38 36 chr15 101133780 101134284 -246237 + MLT1D LTR MaLR 1 505 0 433 289 14 7 chr15 101134286 101134428 -246093 + LTR41 LTR ERVL 6 148 -625 2191 108 0 0 chr15 101134879 101135185 -245336 - AluSg SINE Alu -4 306 1 348 194 0 28 chr15 101135205 101135277 -245244 + LTR41 LTR ERVL 698 767 -6 1621 209 43 9 chr15 101135284 101135734 -244787 + MER63C DNA MER1_type 449 931 0 2048 81 39 3 chr15 101137543 101137827 -242694 + AluSc SINE Alu 1 294 -15 402 274 20 26 chr15 101137913 101138066 -242455 + (TATATG)n Simple_repeat Simple_repeat 4 155 0 241 282 91 9 chr15 101138273 101138383 -242138 + L2 LINE L2 2186 2304 -1010 207 190 0 0 chr15 101142934 101142992 -237529 + (TG)n Simple_repeat Simple_repeat 1 58 0 353 213 125 0 chr15 101144268 101144348 -236173 - MIR SINE MIR -56 206 117 186 43 0 0 chr15 101145004 101145027 -235494 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 2116 111 0 10 chr15 101146111 101146418 -234103 - AluSx SINE Alu -8 304 1 812 303 95 20 chr15 101146969 101147483 -233038 + MLT1G LTR MaLR 1 590 0 21 0 0 0 chr15 101147633 101147654 -232867 + AT_rich Low_complexity Low_complexity 1 21 0 3972 250 58 62 chr15 101147944 101150173 -230348 + L1MCc LINE L1 13 2683 -4259 805 276 129 29 chr15 101150215 101150595 -229926 - LTR52 LTR ERVL -3 418 1 1507 88 65 5 chr15 101150631 101150848 -229673 + MER30 DNA MER1_type 1 230 0 333 149 30 30 chr15 101150849 101150916 -229605 + L1MEc LINE L1 1763 1829 -4567 852 296 41 25 chr15 101150924 101151241 -229280 + L1MDa LINE L1 38 359 -6181 2696 104 5 11 chr15 101151405 101151781 -228740 - THE1C LTR MaLR -1 374 1 1166 250 11 20 chr15 101152306 101152662 -227859 + L1MDa LINE L1 939 1291 -5252 43307 35 22 1 chr15 101152672 101158693 -221828 + L1PA2 LINE L1 3 6152 -3 2346 223 53 26 chr15 101158699 101159456 -221065 + L1MDa LINE L1 1286 2062 -4478 1067 237 82 38 chr15 101159472 101159789 -220732 - MLT1E1 LTR MaLR 0 654 324 1408 231 73 11 chr15 101159932 101160369 -220152 + L1MDb LINE L1 845 1308 -5101 2078 114 0 10 chr15 101160369 101160690 -219831 + AluSx SINE Alu 1 312 0 1201 225 49 102 chr15 101160695 101161094 -219427 + L1MDb LINE L1 2781 3139 -3267 1651 175 0 3 chr15 101161094 101161379 -219142 + AluJb SINE Alu 1 284 -28 1201 225 49 102 chr15 101161379 101161587 -218934 + L1MDb LINE L1 3139 3356 -3050 392 217 56 3 chr15 101161691 101161835 -218686 - ERVL LTR ERVL -1206 4558 4362 332 284 113 21 chr15 101161858 101161999 -218522 + L2 LINE L2 3160 3313 0 942 185 31 15 chr15 101162246 101162441 -218080 - L1MB7 LINE L1 -290 5894 5697 827 254 125 47 chr15 101162464 101162873 -217648 - MER65A LTR ERV1 -4 441 1 1026 189 17 0 chr15 101162875 101163055 -217466 - L1MB7 LINE L1 -510 5668 5486 889 142 69 50 chr15 101163056 101163132 -217389 - AluJo SINE Alu -7 305 232 3989 157 75 12 chr15 101163132 101163865 -216656 - MER4E LTR ERV1 0 779 1 889 142 69 50 chr15 101163865 101164006 -216515 - AluJo SINE Alu -80 232 84 2205 87 0 10 chr15 101164516 101164815 -215706 - AluSq SINE Alu -17 296 1 265 264 94 38 chr15 101165135 101165241 -215280 - L2 LINE L2 -2 3311 3200 246 142 45 0 chr15 101165400 101165451 -215070 + L1MA8 LINE L1 6109 6161 -130 226 192 77 0 chr15 101166065 101166117 -214404 - L2 LINE L2 -3 3310 3255 1758 157 60 31 chr15 101166368 101166719 -213802 + MLT1A1 LTR MaLR 5 365 0 195 359 54 43 chr15 101169159 101169343 -211178 + MIR3 SINE MIR 16 201 -7 313 258 113 13 chr15 101169349 101169508 -211013 - L1MC5 LINE L1 -42 7919 7745 2413 58 3 6 chr15 101169537 101169848 -210673 + AluY SINE Alu 2 311 0 493 170 36 49 chr15 101169876 101170018 -210503 + L1MD3 LINE L1 7640 7991 -4 1654 174 14 0 chr15 101170073 101170360 -210161 - AluSx SINE Alu -21 291 1 1002 190 37 23 chr15 101170468 101170684 -209837 + MER20 DNA MER1_type 1 219 0 326 253 91 10 chr15 101170886 101170985 -209536 + L1ME4a LINE L1 6004 6110 -11 483 282 137 26 chr15 101171578 101172110 -208411 + L1ME3 LINE L1 4698 5288 -858 244 325 0 0 chr15 101172124 101172207 -208314 + L1M2 LINE L1 5485 5567 -724 317 277 101 0 chr15 101172333 101172492 -208029 + L1ME3 LINE L1 5770 5944 -218 201 195 0 0 chr15 101174069 101174110 -206411 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 2239 87 3 0 chr15 101174112 101174410 -206111 - AluSx SINE Alu -13 299 1 545 227 0 0 chr15 101174429 101174526 -205995 - U6 snRNA snRNA -10 97 1 609 290 128 30 chr15 101174883 101175452 -205069 - L1MC4a LINE L1 -1929 5879 5255 534 355 80 15 chr15 101175460 101175787 -204734 - L1MC4a LINE L1 -896 5250 4903 349 257 158 70 chr15 101176694 101176808 -203713 - MIR SINE MIR -114 94 20 422 305 120 6 chr15 101177374 101177541 -202980 - MIR3 SINE MIR -14 194 9 24 0 0 0 chr15 101178596 101178620 -201901 + GC_rich Low_complexity Low_complexity 1 24 0 2127 86 0 13 chr15 101179468 101179772 -200749 + AluY SINE Alu 1 300 -11 1413 234 183 4 chr15 101183283 101183736 -196785 + MLT1F LTR MaLR 1 534 -8 1060 166 20 96 chr15 101184308 101184609 -195912 + L1MD2 LINE L1 5599 5876 -483 1660 214 63 39 chr15 101184798 101185234 -195287 + L1MD2 LINE L1 5841 6292 -67 2271 99 20 0 chr15 101185234 101185528 -194993 - AluSx SINE Alu -12 300 1 1660 214 63 39 chr15 101185528 101185581 -194940 + L1MD2 LINE L1 6292 6342 -17 219 240 0 0 chr15 101186080 101186130 -194391 + L2 LINE L2 2559 2608 -706 418 319 56 53 chr15 101186373 101186639 -193882 + LTR67 LTR ERVL 103 369 -188 1206 286 98 4 chr15 101186813 101187689 -192832 - ERVL LTR ERVL -1140 4624 3672 22 35 0 0 chr15 101188088 101188117 -192404 + AT_rich Low_complexity Low_complexity 1 29 0 476 170 11 0 chr15 101188466 101188560 -191961 - L1MC5 LINE L1 -60 7901 7807 22 35 0 0 chr15 101188908 101188937 -191584 + AT_rich Low_complexity Low_complexity 1 29 0 1325 197 76 29 chr15 101189544 101189632 -190889 + MER7A DNA MER2_type 2 84 -2954 729 82 0 0 chr15 101189632 101189730 -190791 - L1PA5 LINE L1 -2 6152 6055 1325 197 76 29 chr15 101189730 101189956 -190565 + MER7A DNA MER2_type 84 329 -17 376 297 82 27 chr15 101189981 101190200 -190321 - L1M4 LINE L1 -1704 4442 4212 349 281 138 49 chr15 101190424 101190670 -189851 + L2 LINE L2 2421 2688 -626 1271 287 60 26 chr15 101190974 101191722 -188799 + L1MD1 LINE L1 783 1561 -4845 261 284 0 0 chr15 101191731 101191812 -188709 + L1MD1 LINE L1 1635 1715 -4691 23 33 0 0 chr15 101191828 101191858 -188663 + AT_rich Low_complexity Low_complexity 1 30 0 2218 108 24 0 chr15 101192639 101192935 -187586 + AluSg SINE Alu 1 303 -7 541 269 68 45 chr15 101193008 101193361 -187160 + L1MD1 LINE L1 1706 2066 -4340 8983 116 44 10 chr15 101193378 101194014 -186507 - Tigger1 DNA MER2_type -933 1485 872 2179 89 0 73 chr15 101194014 101194330 -186191 - AluSq SINE Alu -20 293 1 8983 116 44 10 chr15 101194330 101195130 -185391 - Tigger1 DNA MER2_type -1546 872 1 6160 125 68 16 chr15 101195144 101196255 -184266 + Tigger3b DNA MER2_type 3 1170 -61 2948 231 62 12 chr15 101196278 101197460 -183061 + L1MD1 LINE L1 5063 6306 -196 194 0 39 0 chr15 101197487 101197513 -183008 + (CA)n Simple_repeat Simple_repeat 2 28 0 311 360 18 0 chr15 101199808 101199919 -180602 - MIR SINE MIR -3 259 147 237 178 0 0 chr15 101199919 101199964 -180557 + (CACCAT)n Simple_repeat Simple_repeat 4 48 0 3790 177 26 36 chr15 101200378 101200986 -179535 + MER44D DNA MER2_type 1 473 -2014 2305 70 3 0 chr15 101200986 101201270 -179251 + AluY SINE Alu 27 311 0 3790 177 26 36 chr15 101201270 101201401 -179120 + MER44D DNA MER2_type 473 604 -1 310 333 177 19 chr15 101202499 101202703 -177818 - L2 LINE L2 -342 2972 2802 207 0 0 0 chr15 101202703 101202726 -177795 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 310 333 177 19 chr15 101202726 101202899 -177622 - L2 LINE L2 -512 2802 2535 2162 111 7 26 chr15 101202931 101203238 -177283 - AluSx SINE Alu -7 305 5 2104 86 20 3 chr15 101203238 101203539 -176982 - L1PA10 LINE L1 -2 6166 5861 1912 183 8 43 chr15 101203539 101203937 -176584 + MLT2B2 LTR ERVL 2 385 -130 2353 98 3 0 chr15 101203937 101204233 -176288 - AluSp SINE Alu -16 297 1 1050 106 0 0 chr15 101204235 101204367 -176154 - AluSp SINE Alu -181 132 1 2300 99 10 26 chr15 101204400 101204713 -175808 - AluSg SINE Alu -2 308 1 8194 187 140 28 chr15 101204713 101206861 -173660 - L1MDa LINE L1 -3927 2613 179 180 0 0 0 chr15 101206861 101206881 -173640 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 8194 187 140 28 chr15 101206881 101207078 -173443 - L1MDa LINE L1 -6361 179 5 7298 219 57 34 chr15 101207061 101207928 -172593 - L1M4 LINE L1 -813 5333 4488 * 1926 192 22 11 chr15 101207928 101208298 -172223 - MLT1A2 LTR MaLR 0 374 1 7298 219 57 34 chr15 101208298 101209950 -170571 - L1M4 LINE L1 -1658 4488 2675 469 210 20 0 chr15 101209952 101210052 -170469 + U13 snRNA snRNA 3 104 0 235 164 197 0 chr15 101210102 101210163 -170358 - L1M4 LINE L1 -3455 2691 2619 207 242 91 0 chr15 101210362 101210428 -170093 - MIR3 SINE MIR -3 205 134 21 36 0 0 chr15 101210714 101210742 -169779 + AT_rich Low_complexity Low_complexity 1 28 0 401 336 57 78 chr15 101210877 101211210 -169311 + L2 LINE L2 2945 3270 -2 652 201 5 76 chr15 101211756 101211940 -168581 - MER104 DNA Tc2 -5 175 5 1116 52 0 0 chr15 101238950 101239084 -141437 + AluY SINE Alu 1 134 -177 2691 32 0 0 chr15 101239084 101239392 -141129 + AluY SINE Alu 1 308 -3 354 288 117 9 chr15 101239990 101240101 -140420 + MIR SINE MIR 12 134 -128 357 247 17 144 chr15 101241392 101241566 -138955 + MIR SINE MIR 47 198 -64 1283 166 21 29 chr15 101241566 101241842 -138679 + AluJo SINE Alu 44 317 0 193 281 0 47 chr15 101241843 101241907 -138614 + MIR SINE MIR 194 254 -8 649 270 87 12 chr15 101242222 101242463 -138058 - L1ME LINE L1 -382 5780 5522 309 227 144 30 chr15 101242493 101242625 -137896 + L1MD1 LINE L1 5808 5954 -288 1966 163 0 7 chr15 101242629 101242936 -137585 + AluJo SINE Alu 7 311 -1 2034 145 3 0 chr15 101242953 101243243 -137278 + AluSg SINE Alu 1 291 -19 2360 177 13 0 chr15 101243274 101243749 -136772 + L1 LINE L1 3297 3777 -2369 1744 146 3 21 chr15 101244591 101244878 -135643 + AluJo SINE Alu 10 291 -21 36 82 0 0 chr15 101250976 101251025 -129496 + GC_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr15 101251593 101251614 -128907 + AT_rich Low_complexity Low_complexity 1 21 0 282 209 132 11 chr15 101251849 101251940 -128581 - L1M4 LINE L1 -3420 2726 2625 2347 105 0 0 chr15 101252311 101252605 -127916 + AluSx SINE Alu 5 298 -14 1775 171 40 14 chr15 101252874 101253226 -127295 + MLT1A1 LTR MaLR 1 361 -4 294 256 66 16 chr15 101253371 101253492 -127029 + L1MC4 LINE L1 7916 8042 0 762 269 10 0 chr15 101253807 101254015 -126506 + HAL1 LINE L1 46 255 -2252 623 260 105 0 chr15 101254008 101254208 -126313 - HAL1 LINE L1 -901 1606 1386 * 2053 181 33 60 chr15 101254539 101255019 -125502 + MLT1C LTR MaLR 1 467 0 32 26 0 0 chr15 101255480 101255519 -125002 + AT_rich Low_complexity Low_complexity 1 39 0 271 335 68 12 chr15 101255685 101256010 -124511 - L1MC4a LINE L1 -1836 5972 5630 2432 76 0 3 chr15 101256134 101256425 -124096 - AluY SINE Alu -21 290 1 27 39 0 19 chr15 101256457 101256479 -124042 + AT_rich Low_complexity Low_complexity 1 22 -29 2107 143 0 0 chr15 101256479 101256766 -123755 - AluSx SINE Alu -25 287 1 27 39 0 19 chr15 101256766 101256795 -123726 + AT_rich Low_complexity Low_complexity 22 51 0 614 250 28 48 chr15 101256845 101257093 -123428 - L1MA9 LINE L1 -139 6173 5931 857 181 113 0 chr15 101257093 101257270 -123251 + MLT2B1 LTR ERVL 317 513 -7 591 231 98 40 chr15 101257281 101257506 -123015 + LTR33 LTR ERVL 107 344 -177 646 250 42 33 chr15 101257809 101258021 -122500 + LTR33 LTR ERVL 280 493 -28 283 313 10 0 chr15 101258107 101258203 -122318 - ERVL LTR ERVL -887 4877 4781 452 168 84 0 chr15 101258264 101258359 -122162 + L1MD2 LINE L1 5516 5618 -2424 2172 134 23 8 chr15 101258359 101258710 -121811 - THE1B LTR MaLR -8 356 1 1479 251 98 13 chr15 101258710 101259177 -121344 + L1MD2 LINE L1 5614 6120 -239 358 283 58 19 chr15 101259785 101259990 -120531 + L1M4 LINE L1 2176 2388 -3758 * 801 190 11 6 chr15 101259976 101260150 -120371 + L1MB3 LINE L1 5890 6064 -119 663 179 21 14 chr15 101260148 101260293 -120228 + L1MB3 LINE L1 6029 6174 -9 * 2281 228 71 15 chr15 101260299 101260812 -119709 - L1ME1 LINE L1 -9 6157 5674 2349 114 0 7 chr15 101260812 101261120 -119401 + AluSp SINE Alu 6 311 -2 2348 62 36 23 chr15 101261120 101261427 -119094 + AluY SINE Alu 1 311 0 2281 228 71 15 chr15 101261427 101261562 -118959 - L1ME1 LINE L1 -491 5675 5472 273 289 58 8 chr15 101261611 101261760 -118761 + MLT1H1 LTR MaLR 386 555 0 1222 143 28 18 chr15 101261793 101262010 -118511 + MER72 LTR ERV1 1 219 -503 1652 222 59 21 chr15 101262027 101262450 -118071 + MER49 LTR ERV1 485 923 0 270 288 47 23 chr15 101262566 101262706 -117815 + MLT1-int LTR MaLR 399 526 -847 2329 83 13 3 chr15 101263241 101263543 -116978 + AluY SINE Alu 1 305 -6 27 0 0 0 chr15 101263546 101263573 -116948 + AT_rich Low_complexity Low_complexity 1 27 0 293 287 16 49 chr15 101264704 101264826 -115695 - ERVL LTR ERVL -3207 2557 2440 471 294 59 12 chr15 101264827 101264997 -115524 - LTR33 LTR ERVL -343 178 1 839 265 90 29 chr15 101265018 101265464 -115057 + HAL1 LINE L1 1683 2155 -352 2399 91 10 0 chr15 101265830 101266128 -114393 - AluSx SINE Alu -11 301 1 263 307 0 46 chr15 101266805 101266919 -113602 - MIR3 SINE MIR -108 100 3 1482 97 0 10 chr15 101266969 101267165 -113356 - AluSg/x SINE Alu -19 293 100 1792 181 0 4 chr15 101267679 101267981 -112540 + AluJb SINE Alu 7 307 0 2271 121 0 0 chr15 101268494 101268800 -111721 + AluSx SINE Alu 1 306 -6 2353 100 0 6 chr15 101269559 101269870 -110651 + AluSg SINE Alu 1 309 -1 188 297 62 16 chr15 101270999 101271063 -109458 - L2 LINE L2 -5 3267 3201 714 199 68 113 chr15 101271085 101271151 -109370 + MER33 DNA MER1_type 4 71 -2514 1929 118 9 84 chr15 101271151 101271474 -109047 - AluSx SINE Alu -13 299 1 714 199 68 113 chr15 101271474 101271743 -108778 + MER33 DNA MER1_type 71 324 0 4565 152 38 42 chr15 101272073 101273061 -107460 + L1MB3 LINE L1 5197 6183 0 1897 145 12 56 chr15 101273148 101273472 -107049 + AluSx SINE Alu 1 310 -2 657 261 165 52 chr15 101274551 101274976 -105545 + L2 LINE L2 2837 3309 -4 3218 199 25 12 chr15 101275016 101275708 -104813 + MER21B LTR ERV1 1 701 -162 2304 163 56 7 chr15 101276123 101276535 -103986 + Tigger2a DNA MER2_type 1 432 -2 307 265 108 0 chr15 101277789 101277891 -102630 - L2 LINE L2 -38 3234 3122 792 345 127 14 chr15 101277996 101278588 -101933 - L2 LINE L2 -422 2892 2234 22 56 0 0 chr15 101278869 101278905 -101616 + AT_rich Low_complexity Low_complexity 1 36 0 2043 159 0 6 chr15 101279065 101279379 -101142 + AluJb SINE Alu 1 312 0 263 198 74 93 chr15 101279858 101279893 -100628 - L1ME4a LINE L1 0 6121 6087 2750 17 0 0 chr15 101279893 101280189 -100332 - AluYa5 SINE Alu -15 296 1 263 198 74 93 chr15 101280189 101280315 -100206 - L1ME4a LINE L1 -34 6087 5963 315 352 41 0 chr15 101280420 101280616 -99905 - L1ME4a LINE L1 -329 5792 5589 1665 103 9 0 chr15 101280765 101280979 -99542 - AluSc SINE Alu -14 295 80 239 215 183 11 chr15 101281076 101281169 -99352 - L1ME4a LINE L1 -38 6083 5975 327 288 99 35 chr15 101281211 101281529 -98992 - L1ME4a LINE L1 -217 5904 5558 2209 129 0 3 chr15 101281599 101281901 -98620 - AluSx SINE Alu -11 301 1 358 261 211 7 chr15 101282004 101282146 -98375 + MIR SINE MIR 92 262 0 512 279 59 87 chr15 101282236 101282626 -97895 + MLT1J LTR MaLR 72 478 0 1737 131 4 0 chr15 101282831 101283068 -97453 + AluSp SINE Alu 1 238 -75 369 287 74 67 chr15 101284212 101284574 -95947 + MLT1J2 LTR MaLR 1 332 -118 774 200 116 0 chr15 101284601 101284756 -95765 - MER5A DNA MER1_type -16 173 1 21 82 0 0 chr15 101285362 101285411 -95110 + AT_rich Low_complexity Low_complexity 1 49 0 2635 117 5 5 chr15 101285413 101285788 -94733 + THE1C LTR MaLR 1 375 0 1984 133 57 23 chr15 101286170 101286208 -94313 + MER47A DNA MER2_type 1 36 -2287 2102 134 0 0 chr15 101286208 101286539 -93982 - AluSx SINE Alu 0 331 1 1984 133 57 23 chr15 101286539 101286853 -93668 + MER47A DNA MER2_type 36 366 0 1990 106 9 58 chr15 101287269 101287598 -92923 + AluSq SINE Alu 1 313 0 231 226 0 73 chr15 101289294 101289418 -91103 + (CGGGG)n Simple_repeat Simple_repeat 5 119 0 794 248 79 5 chr15 101289877 101290091 -90430 - MIR SINE MIR -21 241 12 1050 201 57 26 chr15 101290592 101290929 -89592 - L1ME1 LINE L1 -128 6038 5697 3259 245 8 30 chr15 101290929 101291977 -88544 + ERVL LTR ERVL 2116 3224 -2540 1447 193 0 0 chr15 101291978 101292217 -88304 - AluJo SINE Alu -48 264 26 1056 251 35 1 chr15 101292217 101292556 -87965 + ERVL LTR ERVL 3319 3702 -2062 497 211 183 0 chr15 101292589 101292764 -87757 - L1MC5 LINE L1 -1116 6845 6639 609 128 51 0 chr15 101292769 101292886 -87635 - MER53 DNA DNA 0 189 67 1172 329 54 35 chr15 101292886 101293053 -87468 + L1M4 LINE L1 2362 2524 -3622 2351 121 0 3 chr15 101293053 101293367 -87154 + AluSp SINE Alu 1 313 0 1172 329 54 35 chr15 101293367 101293934 -86587 + L1M4 LINE L1 2524 3110 -3036 1148 230 103 20 chr15 101293934 101294208 -86313 + L1MC4a LINE L1 5586 5907 -1901 2233 115 7 0 chr15 101294208 101294512 -86009 + AluSc SINE Alu 1 306 -3 1148 230 103 20 chr15 101294512 101294646 -85875 + L1MC4a LINE L1 5907 6028 -1780 228 239 141 0 chr15 101294664 101294735 -85786 + L1MC4a LINE L1 6690 6770 -1038 1710 180 27 6 chr15 101294736 101295064 -85457 - MSTB1 LTR MaLR 0 432 98 255 127 3 0 chr15 101295064 101295135 -85386 - MSTB LTR MaLR -309 148 97 251 114 0 0 chr15 101295135 101295170 -85351 - MSTB LTR MaLR -310 147 113 251 114 0 0 chr15 101295170 101295205 -85316 - MSTB2 LTR MaLR -310 147 113 251 114 0 0 chr15 101295205 101295240 -85281 - MSTB2 LTR MaLR -310 147 113 251 114 0 0 chr15 101295240 101295275 -85246 - MSTB2 LTR MaLR -310 147 113 243 118 0 0 chr15 101295275 101295309 -85212 - MSTB LTR MaLR -310 147 114 849 138 1 0 chr15 101295309 101295476 -85045 - MSTB LTR MaLR -309 148 1 2328 253 80 34 chr15 101295483 101296525 -83996 + L1MC4 LINE L1 6860 7949 -93 438 317 67 23 chr15 101296536 101296870 -83651 + L2 LINE L2 2692 3036 -236 213 316 128 8 chr15 101297479 101297596 -82925 + MIR SINE MIR 81 211 -51 196 259 139 46 chr15 101298821 101298929 -81592 + L2 LINE L2 3146 3263 -9 271 304 61 44 chr15 101299017 101299198 -81323 - L1MC4a LINE L1 -1886 5922 5739 278 280 247 21 chr15 101299198 101299437 -81084 - L2 LINE L2 -1300 2014 1722 860 130 0 0 chr15 101299796 101299911 -80610 - FLAM_C SINE Alu -28 115 1 21 0 0 0 chr15 101300217 101300238 -80283 + AT_rich Low_complexity Low_complexity 1 21 0 1046 196 0 0 chr15 101300295 101300463 -80058 - AluJb SINE Alu -13 299 132 338 206 0 0 chr15 101300463 101300526 -79995 - AluS SINE Alu -239 64 2 23 0 0 0 chr15 101300528 101300551 -79970 + AT_rich Low_complexity Low_complexity 1 23 0 239 247 72 10 chr15 101300618 101300715 -79806 - L1P LINE L1 -1656 4490 4388 259 201 82 104 chr15 101300856 101300930 -79591 + L1ME4a LINE L1 5801 5875 -246 2312 99 3 19 chr15 101300930 101301244 -79277 - AluY SINE Alu -2 309 1 259 201 82 104 chr15 101301244 101301438 -79083 + L1ME4a LINE L1 5875 6063 -58 1465 237 111 33 chr15 101302340 101302888 -77633 + MLT1E LTR MaLR 3 593 0 1971 126 13 35 chr15 101303252 101303562 -76959 + AluSc SINE Alu 1 303 -6 189 0 0 0 chr15 101303809 101303830 -76691 + (T)n Simple_repeat Simple_repeat 1 21 0 26 0 0 0 chr15 101303952 101303978 -76543 + AT_rich Low_complexity Low_complexity 1 26 0 2311 178 188 34 chr15 101304083 101304251 -76270 + Charlie1a DNA MER1_type 67 208 -2553 2068 148 0 3 chr15 101304251 101304548 -75973 + AluJb SINE Alu 1 296 -16 2311 178 188 34 chr15 101304548 101305114 -75407 + Charlie1a DNA MER1_type 208 914 -541 1361 156 0 14 chr15 101305118 101305336 -75185 + AluJb SINE Alu 87 301 -11 842 180 248 12 chr15 101305371 101305694 -74827 + Charlie1a DNA MER1_type 1057 1455 0 2234 123 0 0 chr15 101306160 101306452 -74069 + AluSq SINE Alu 1 292 -21 204 40 0 0 chr15 101306581 101306606 -73915 + (CA)n Simple_repeat Simple_repeat 2 26 0 410 313 138 18 chr15 101306719 101306943 -73578 + L1ME4a LINE L1 5866 6116 -5 2230 107 3 0 chr15 101307765 101308064 -72457 + AluSg SINE Alu 1 300 -10 242 29 29 0 chr15 101309505 101309540 -70981 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 1884 101 36 33 chr15 101309611 101309917 -70604 + AluSx SINE Alu 3 309 -3 265 135 39 0 chr15 101309918 101309970 -70551 - AluSp/q SINE Alu -6 297 244 208 254 42 0 chr15 101311597 101311668 -68853 + (CTCTG)n Simple_repeat Simple_repeat 2 75 0 504 81 0 0 chr15 101311939 101312013 -68508 + (TA)n Simple_repeat Simple_repeat 1 74 0 23 0 0 0 chr15 101314319 101314342 -66179 + AT_rich Low_complexity Low_complexity 1 23 0 355 256 68 17 chr15 101316614 101316731 -63790 - L2 LINE L2 -3 3310 3188 291 344 119 0 chr15 101316738 101316889 -63632 - MIR3 SINE MIR -9 199 31 348 240 140 73 chr15 101317835 101318014 -62507 - MIR SINE MIR -70 192 2 343 292 80 6 chr15 101318331 101318528 -61993 + L1MCa LINE L1 997 3214 -1313 214 182 23 0 chr15 101320056 101320100 -60421 + G-rich Low_complexity Low_complexity 3 47 0 1744 146 3 21 chr15 101320459 101320746 -59775 + AluJo SINE Alu 10 291 -21 204 240 40 0 chr15 101328565 101328615 -51906 + MIR SINE MIR 96 147 -61 202 217 22 0 chr15 101329080 101329126 -51395 + MIR SINE MIR 103 150 -58 1991 151 0 30 chr15 101329656 101329961 -50560 + AluSx SINE Alu 2 297 -15 282 327 146 12 chr15 101329978 101330143 -50378 + MIR SINE MIR 48 234 -28 1101 123 7 0 chr15 101330882 101331036 -49485 + 7SLRNA srpRNA srpRNA 95 249 -71 180 77 0 0 chr15 101332147 101332173 -48348 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 201 39 0 0 chr15 101351761 101351787 -28734 + (TG)n Simple_repeat Simple_repeat 2 27 0 688 182 28 35 chr15 101353520 101353588 -26933 + LTR54B LTR ERV1 1 68 -430 1917 132 54 46 chr15 101353588 101353960 -26561 + THE1C LTR MaLR 1 375 0 688 182 28 35 chr15 101353960 101354034 -26487 + LTR54B LTR ERV1 68 142 -356 1138 121 55 10 chr15 101354117 101354316 -26205 + LTR54 LTR ERV1 303 510 0 1344 225 141 54 chr15 101354336 101354926 -25595 - LTR50 LTR ERVL -131 664 24 251 313 66 66 chr15 101354943 101355125 -25396 - MIR3 SINE MIR -6 202 21 2596 190 9 29 chr15 101355327 101355879 -24642 - L1MD3 LINE L1 0 7995 7455 2413 76 34 0 chr15 101357926 101358254 -22267 + L1PA13 LINE L1 5825 6163 0 255 300 79 42 chr15 101359268 101359508 -21013 + L3b LINE CR1 1110 1358 -225 1995 130 0 3 chr15 101359559 101359859 -20662 + AluSx SINE Alu 1 299 -13 595 269 72 26 chr15 101361663 101361968 -18553 - L1MC4a LINE L1 -1799 6009 5691 212 335 28 35 chr15 101362844 101362986 -17535 + MIR SINE MIR 21 160 -63 216 0 0 0 chr15 101364895 101364919 -15602 + (T)n Simple_repeat Simple_repeat 1 24 0 2294 82 0 0 chr15 101365813 101366107 -14414 - AluY SINE Alu -17 294 1 231 356 36 0 chr15 101368036 101368166 -12355 + MIR SINE MIR 65 204 -4 * 984 344 103 32 chr15 101368163 101368920 -11601 - L2 LINE L2 -1003 2311 1501 246 265 15 0 chr15 101368979 101369047 -11474 - MER112 DNA MER1_type -185 75 7 639 186 47 0 chr15 101369120 101369249 -11272 + AluSq/x SINE Alu 2 136 -177 830 211 72 38 chr15 101369796 101370033 -10488 + MLT1D LTR MaLR 1 245 -260 419 0 20 0 chr15 101370342 101370393 -10128 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 1318 144 40 5 chr15 101370394 101370616 -9905 - AluSx SINE Alu -82 230 1 307 308 0 0 chr15 101370868 101370946 -9575 + L2 LINE L2 2227 2304 -1010 27 0 0 0 chr15 101371161 101371188 -9333 + AT_rich Low_complexity Low_complexity 1 27 0 30 59 0 0 chr15 101371579 101371630 -8891 + AT_rich Low_complexity Low_complexity 1 51 0 26 50 0 0 chr15 101371754 101371794 -8727 + AT_rich Low_complexity Low_complexity 1 40 0 1400 155 0 5 chr15 101371858 101372077 -8444 - AluSx SINE Alu -92 220 3 4429 124 16 23 chr15 101372718 101373459 -7062 + L1PB1 LINE L1 5416 6151 0 199 154 128 0 chr15 101373688 101373727 -6794 - MIR SINE MIR -8 254 211 335 277 247 6 chr15 101374491 101374657 -5864 - MIR SINE MIR -6 256 51 256 332 19 76 chr15 101375019 101375230 -5291 + L2 LINE L2 1561 1759 -1555 2403 147 17 24 chr15 101375298 101375526 -4995 + L1PA16 LINE L1 5749 5977 -189 1615 147 30 0 chr15 101375526 101375791 -4730 + AluSg SINE Alu 5 277 -33 306 0 0 0 chr15 101375791 101375825 -4696 + (CA)n Simple_repeat Simple_repeat 1 34 0 2403 147 17 24 chr15 101375825 101376010 -4511 + L1PA16 LINE L1 5975 6160 -6 304 350 14 49 chr15 101377067 101377210 -3311 - MIR3 SINE MIR -11 197 60 2211 59 17 0 chr15 101377974 101378264 -2257 - AluY SINE Alu -12 299 5 1177 206 128 83 chr15 101379581 101380048 -473 + MLT1H LTR MaLR 62 549 0 581 99 0 11 chr15 101380415 101380506 -15 + (TTCC)n Simple_repeat Simple_repeat 1 90 0