393 100 71 14 chr15 17000001 17000071 -84380450 + MSTA LTR MaLR 124 197 -231 2204 110 10 3 chr15 17000073 17000452 -84380069 + AluY SINE Alu 1 381 0 764 191 167 9 chr15 17000452 17000662 -84379859 + MSTA LTR MaLR 186 428 0 685 228 0 59 chr15 17000664 17000883 -84379638 + L1 LINE L1 3344 3549 -2597 1178 254 59 104 chr15 17000985 17001266 -84379255 - L1MEd LINE L1 -3105 3024 2732 250 171 0 0 chr15 17001266 17001307 -84379214 + U2 snRNA snRNA 1 41 -147 1178 254 59 104 chr15 17001307 17001810 -84378711 - L1MEd LINE L1 -3397 2732 2237 1276 219 7 7 chr15 17001840 17002110 -84378411 + L1M3e LINE L1 7 276 -6754 505 261 116 39 chr15 17002095 17002158 -84378363 - L1MEd LINE L1 -4011 2118 2061 * 964 113 6 6 chr15 17002158 17002317 -84378204 + (TTCC)n Simple_repeat Simple_repeat 3 161 0 505 261 116 39 chr15 17002317 17002537 -84377984 - L1MEd LINE L1 -4068 2061 1813 2032 241 9 9 chr15 17002538 17003116 -84377405 - L1MEd LINE L1 -4475 1654 1077 1296 217 38 62 chr15 17005195 17005568 -84374953 + MSTD LTR MaLR 33 396 0 1502 273 28 2 chr15 17005571 17006003 -84374518 + MSTD-int LTR MaLR 2 444 -1291 * 1823 252 143 66 chr15 17005999 17006831 -84373690 + MSTD-int LTR MaLR 730 1625 -26 1506 208 46 14 chr15 17006854 17007200 -84373321 + MSTD LTR MaLR 1 357 -39 1053 122 0 0 chr15 17007204 17007352 -84373169 + AluY SINE Alu 146 293 -18 308 102 0 20 chr15 17007352 17007401 -84373120 + MSTD LTR MaLR 348 395 -1 478 106 0 47 chr15 17007403 17007488 -84373033 - L1M2 LINE L1 -822 5469 5389 1629 183 29 39 chr15 17007496 17007907 -84372614 + L1MA7 LINE L1 5867 6273 -18 1365 319 51 41 chr15 17007985 17008774 -84371747 - MER89-int LTR ERV1 -2507 4294 3498 260 176 0 66 chr15 17011914 17012096 -84368425 + (CAGGT)n Simple_repeat Simple_repeat 1 170 0 346 325 41 33 chr15 17012893 17013164 -84367357 - L1ME3A LINE L1 -214 5956 5684 303 205 0 98 chr15 17013307 17013419 -84367102 - L1MEd LINE L1 -5051 1068 968 1758 238 82 14 chr15 17017906 17018490 -84362031 - MER67B LTR ERV1 -6 655 32 887 234 71 69 chr15 17019386 17019750 -84360771 + MLT1A1 LTR MaLR 1 365 0 369 347 112 16 chr15 17020050 17020301 -84360220 - L1ME4a LINE L1 -183 5938 5664 359 251 82 45 chr15 17020286 17020460 -84360061 - L1ME4a LINE L1 -755 5391 5213 * 267 298 38 15 chr15 17020995 17021126 -84359395 - L1ME4a LINE L1 -2595 3551 3418 368 317 13 88 chr15 17021700 17021927 -84358594 - MIR SINE MIR 0 262 53 327 164 0 0 chr15 17024439 17024500 -84356021 + GA-rich Low_complexity Low_complexity 1 61 0 912 238 107 47 chr15 17024652 17025081 -84355440 - MLT1D LTR MaLR -12 493 39 180 0 0 0 chr15 17028151 17028171 -84352350 + (CA)n Simple_repeat Simple_repeat 2 21 0 601 203 11 0 chr15 17028925 17029102 -84351419 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 3823 138 14 22 chr15 17029105 17029690 -84350831 - MER50 LTR ERV1 -17 717 135 2153 129 0 0 chr15 17029690 17030001 -84350520 - AluSc SINE Alu 0 311 1 3823 138 14 22 chr15 17030001 17030054 -84350467 - MER50 LTR ERV1 -599 135 83 699 201 0 0 chr15 17030082 17030332 -84350189 + (TCCA)n Simple_repeat Simple_repeat 1 250 0 182 125 0 25 chr15 17030900 17030940 -84349581 + (TC)n Simple_repeat Simple_repeat 2 40 0 2109 147 3 0 chr15 17031254 17031553 -84348968 - AluSx SINE Alu -12 300 1 507 226 8 0 chr15 17032192 17032316 -84348205 - L1MA8 LINE L1 0 6291 6167 1528 208 60 21 chr15 17033108 17033493 -84347028 + MLT1D LTR MaLR 1 400 -105 507 271 0 0 chr15 17034219 17034348 -84346173 - FRAM SINE Alu -46 130 2 597 125 21 0 chr15 17034365 17034461 -84346060 + AluJ/FLAM SINE Alu 2 99 -213 506 276 70 30 chr15 17034476 17034675 -84345846 - MLT2F LTR ERVL -72 591 385 463 197 42 42 chr15 17034692 17034834 -84345687 - LTR49-int LTR ERV1 -2154 4177 4036 3615 232 46 25 chr15 17034844 17035693 -84344828 + L1PA13 LINE L1 1 867 -5920 4880 204 18 38 chr15 17035699 17037498 -84343023 + L1PA13 LINE L1 1204 2981 -3816 40330 60 3 1 chr15 17037504 17043651 -84336870 - L1PA4 LINE L1 0 6155 1 1366 179 17 109 chr15 17043686 17043741 -84336780 + THE1C LTR MaLR 1 59 -316 2769 17 0 0 chr15 17043741 17044038 -84336483 + AluYa5 SINE Alu 1 297 -14 1366 179 17 109 chr15 17044038 17044395 -84336126 + THE1C LTR MaLR 59 375 0 1331 145 9 13 chr15 17044395 17044623 -84335898 + THE1C-int LTR MaLR 1 227 -1353 1623 104 0 0 chr15 17044623 17044853 -84335668 + MER4E LTR ERV1 1 230 -549 2227 121 3 0 chr15 17044853 17045151 -84335370 + AluSp SINE Alu 1 299 -14 728 119 8 0 chr15 17045169 17045287 -84335234 + (GGAA)n Simple_repeat Simple_repeat 2 120 0 2191 147 98 6 chr15 17045288 17045711 -84334810 + MER4E LTR ERV1 217 650 -129 6657 160 7 29 chr15 17045730 17046939 -84333582 + THE1-int LTR MaLR 416 1578 -2 10155 89 12 1 chr15 17046972 17048355 -84332166 + HERVL-A2 LTR ERVL 4258 5654 0 2993 81 17 2 chr15 17048355 17048762 -84331759 + MLT2A2 LTR ERVL 1 413 -40 21 0 0 0 chr15 17048767 17048788 -84331733 + AT_rich Low_complexity Low_complexity 1 21 0 247 73 98 0 chr15 17048794 17048835 -84331686 - MLT2A2 LTR ERVL -10 443 399 1285 232 23 31 chr15 17054350 17054738 -84325783 - MLT1B LTR MaLR 0 390 6 435 305 21 21 chr15 17055133 17055323 -84325198 + L1MEc LINE L1 390 579 -5817 812 164 10 77 chr15 17055395 17055590 -84324931 - MER4A LTR ERV1 -110 554 373 240 99 380 14 chr15 17055645 17055716 -84324805 - MER4A LTR ERV1 -567 97 1 204 88 59 0 chr15 17057078 17057112 -84323409 + (CCTTG)n Simple_repeat Simple_repeat 4 39 0 1578 151 27 83 chr15 17057134 17057579 -84322942 + HSREP522 Satellite telomeric 3 422 -82 981 197 5 0 chr15 17057598 17057801 -84322720 - L1 LINE L1 -1998 4148 3945 619 175 8 42 chr15 17057832 17057952 -84322569 - FLAM_A SINE Alu -17 116 1 21 0 0 0 chr15 17058005 17058026 -84322495 + AT_rich Low_complexity Low_complexity 1 21 0 5697 137 15 18 chr15 17058026 17059116 -84321405 + L1MA5A LINE L1 5174 6264 -33 21 0 0 0 chr15 17059130 17059151 -84321370 + AT_rich Low_complexity Low_complexity 1 21 0 2432 146 51 91 chr15 17059860 17060484 -84320037 - L1MB2 LINE L1 -1 6170 5572 22 0 0 0 chr15 17060552 17060574 -84319947 + AT_rich Low_complexity Low_complexity 1 22 0 2396 76 0 22 chr15 17060709 17061023 -84319498 - AluY SINE Alu -4 307 1 276 30 0 0 chr15 17061298 17061331 -84319190 + (CA)n Simple_repeat Simple_repeat 2 34 0 241 240 0 0 chr15 17062732 17062782 -84317739 + MER3 DNA MER1_type 41 90 -119 * 740 173 123 17 chr15 17062750 17062929 -84317592 - MER3 DNA MER1_type -11 198 1 705 152 3 43 chr15 17063374 17063575 -84316946 - L1MB8 LINE L1 -2 6182 5989 807 188 0 6 chr15 17063595 17063760 -84316761 - L1MB8 LINE L1 -170 6008 5845 278 310 9 0 chr15 17064595 17064708 -84315813 + (TG)n Simple_repeat Simple_repeat 2 115 0 1639 151 14 92 chr15 17066419 17066790 -84313731 + MER2 DNA MER2_type 3 344 0 387 0 0 0 chr15 17067215 17067258 -84313263 + (CA)n Simple_repeat Simple_repeat 1 43 0 194 114 0 23 chr15 17067261 17067305 -84313216 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 247 204 0 19 chr15 17068278 17068332 -84312189 + L2 LINE L2 3217 3269 -3 600 314 64 13 chr15 17068917 17069153 -84311368 + L2 LINE L2 2729 2976 -338 842 149 32 0 chr15 17069158 17069312 -84311209 - L1MB1 LINE L1 -1 6167 6009 1959 120 11 0 chr15 17071069 17071335 -84309186 - AluSx SINE Alu -43 269 1 26 0 0 0 chr15 17074130 17074156 -84306365 + AT_rich Low_complexity Low_complexity 1 26 0 213 226 113 47 chr15 17074486 17074592 -84305929 + MIR SINE MIR 100 212 -50 340 310 129 19 chr15 17074807 17074962 -84305559 + MIR3 SINE MIR 13 184 -24 2283 123 0 0 chr15 17075799 17076109 -84304412 + AluSq SINE Alu 1 310 -3 278 26 26 0 chr15 17076864 17076903 -84303618 + (TA)n Simple_repeat Simple_repeat 1 40 0 22 56 0 0 chr15 17077748 17077784 -84302737 + AT_rich Low_complexity Low_complexity 1 36 0 809 176 8 0 chr15 17077784 17077915 -84302606 + AluJo/FLAM SINE Alu 1 132 -180 1611 178 59 0 chr15 17077917 17078204 -84302317 + AluJo SINE Alu 1 304 -8 254 318 0 0 chr15 17078395 17078483 -84302038 + MIR SINE MIR 175 262 0 2370 83 0 7 chr15 17078564 17078865 -84301656 - AluY SINE Alu -12 299 1 253 260 57 24 chr15 17078902 17079025 -84301496 - L1ME4a LINE L1 -51 6070 5944 1982 115 3 31 chr15 17079192 17079478 -84301043 + AluSq SINE Alu 5 282 -31 180 0 0 0 chr15 17079479 17079499 -84301022 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 616 251 16 43 chr15 17079509 17079764 -84300757 + L1MEd LINE L1 1010 1257 -4862 881 108 0 47 chr15 17080766 17080914 -84299607 - AluSp/q SINE Alu 0 313 173 2561 159 38 4 chr15 17080914 17081410 -84299111 - L1MA4 LINE L1 -290 6010 5498 2170 129 0 3 chr15 17082679 17082989 -84297532 + AluSx SINE Alu 1 309 -3 1364 236 47 4 chr15 17083663 17083939 -84296582 - L1ME4a LINE L1 -465 5701 5391 2170 91 0 3 chr15 17083939 17084224 -84296297 - AluSx SINE Alu -24 288 5 1364 236 47 4 chr15 17084224 17084410 -84296111 - L1ME4a LINE L1 -775 5391 5214 2113 112 3 0 chr15 17084718 17085004 -84295517 + AluSg SINE Alu 1 287 -23 24 0 0 0 chr15 17085007 17085031 -84295490 + AT_rich Low_complexity Low_complexity 1 24 0 2187 95 3 0 chr15 17085243 17085549 -84294972 + AluSx SINE Alu 1 307 0 1970 142 0 28 chr15 17086082 17086400 -84294121 + AluSx SINE Alu 1 309 -3 2186 108 7 0 chr15 17087086 17087373 -84293148 + AluSx SINE Alu 1 289 -23 635 121 0 10 chr15 17087763 17087862 -84292659 - MER4A LTR ERV1 -566 98 1 944 121 79 11 chr15 17087862 17088052 -84292469 + L1MA3 LINE L1 5705 5907 -398 * 2513 195 83 10 chr15 17088050 17088727 -84291794 - L1 LINE L1 -1446 4700 3975 * 6545 122 28 23 chr15 17088719 17090207 -84290314 - L1PA3 LINE L1 -2 6153 4674 1960 113 0 21 chr15 17090207 17090516 -84290005 - AluSx SINE Alu 0 311 9 6545 122 28 23 chr15 17090516 17090736 -84289785 - L1PA3 LINE L1 -1481 4674 3052 2111 118 6 9 chr15 17090737 17091069 -84289452 - L1PB2 LINE L1 0 7570 7240 2798 200 25 27 chr15 17091069 17092032 -84288489 - L1PB2 LINE L1 -622 6948 5996 2953 214 32 10 chr15 17092053 17092966 -84287555 - L1PB2 LINE L1 -3114 4451 3509 601 220 10 171 chr15 17092970 17093300 -84287221 - LTR28 LTR ERV1 -136 894 1 7081 226 42 8 chr15 17093301 17094925 -84285596 - L1M1 LINE L1 -5870 1695 17 376 191 0 0 chr15 17096539 17096623 -84283898 - L1MA4 LINE L1 -179 6121 6041 601 219 46 13 chr15 17096642 17096793 -84283728 + FRAM SINE Alu 1 156 -20 1640 212 3 0 chr15 17096795 17097097 -84283424 + AluJo SINE Alu 1 303 -9 235 226 21 0 chr15 17097218 17097304 -84283217 + L1MB5 LINE L1 5838 5932 -238 1803 141 25 14 chr15 17097341 17097625 -84282896 + AluSx SINE Alu 1 287 -25 2311 258 89 48 chr15 17097994 17100383 -84280138 - L1M4 LINE L1 -3644 3000 509 237 189 116 11 chr15 17100432 17100527 -84279994 - L1M4 LINE L1 -3081 3065 2961 1275 243 14 7 chr15 17100527 17100815 -84279706 - AluJb SINE Alu -22 290 1 290 203 40 124 chr15 17100906 17101108 -84279413 + MER53 DNA DNA 5 189 0 1015 258 0 14 chr15 17101833 17102054 -84278467 - AluJo SINE Alu -82 230 13 314 304 5 77 chr15 17102489 17102683 -84277838 + MLT1E2 LTR MaLR 1 180 -446 23 54 0 0 chr15 17104595 17104632 -84275889 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr15 17105432 17105464 -84275057 + AT_rich Low_complexity Low_complexity 1 32 0 3423 210 57 27 chr15 17106992 17108895 -84271626 - L1MA8 LINE L1 -3 6288 4326 4837 135 66 7 chr15 17108917 17109868 -84270653 - L1MA2 LINE L1 0 6304 5298 516 256 175 6 chr15 17110460 17110820 -84269701 + L1MB2 LINE L1 1071 1491 -4822 568 292 74 19 chr15 17110857 17111295 -84269226 + L1MB2 LINE L1 1363 2223 -4160 427 225 100 50 chr15 17111459 17111896 -84268625 + L1MB2 LINE L1 2137 2611 -3771 281 280 146 0 chr15 17112143 17112391 -84268130 + L1MB2 LINE L1 2837 3119 -3263 804 281 30 9 chr15 17112400 17112731 -84267790 + L1MB2 LINE L1 4757 5094 -1288 447 251 170 0 chr15 17112726 17112949 -84267572 + L1MB2 LINE L1 5914 6174 -233 * 2223 93 10 7 chr15 17112975 17113275 -84267246 + AluSx SINE Alu 1 301 -11 802 282 64 88 chr15 17114159 17114783 -84265738 + L1M3 LINE L1 2 610 -5345 2756 236 68 55 chr15 17114826 17115450 -84265071 + L1M3 LINE L1 3978 4592 -1464 2194 106 0 7 chr15 17115450 17115733 -84264788 - AluSg SINE Alu -29 281 1 2756 236 68 55 chr15 17115733 17116473 -84264048 + L1M3 LINE L1 4592 5367 -689 376 183 0 0 chr15 17116482 17116553 -84263968 + L1PB4 LINE L1 6045 6115 -41 2129 84 18 0 chr15 17117160 17117478 -84263043 - AluSc SINE Alu 0 323 1 398 298 109 75 chr15 17118296 17118735 -84261786 + L1M2 LINE L1 613 1066 -5783 2206 117 3 3 chr15 17119016 17119315 -84261206 + AluSg SINE Alu 1 299 -11 2533 114 13 8 chr15 17120511 17120904 -84259617 + L1PA12 LINE L1 5774 6168 0 502 259 0 32 chr15 17121226 17121411 -84259110 - MER104 DNA MER2_type -1 179 1 562 292 93 40 chr15 17121513 17121761 -84258760 - MIR SINE MIR -1 261 4 264 30 0 0 chr15 17122974 17123007 -84257514 + (TG)n Simple_repeat Simple_repeat 2 34 0 262 367 36 36 chr15 17123507 17123646 -84256875 - MER5B DNA MER1_type 0 178 40 733 178 0 0 chr15 17123651 17123769 -84256752 + FLAM_A SINE Alu 1 118 -15 1066 198 156 11 chr15 17123943 17124206 -84256315 - AluJb SINE Alu -1 301 1 183 305 85 0 chr15 17124831 17124890 -84255631 - L2 LINE L2 -50 3263 3200 325 299 101 22 chr15 17125954 17126164 -84254357 + MIR SINE MIR 7 231 -31 572 189 9 9 chr15 17128139 17128245 -84252276 + U6 snRNA snRNA 1 106 -1 295 371 53 0 chr15 17128938 17129089 -84251432 - MIR SINE MIR -47 215 57 3128 163 8 9 chr15 17129471 17129999 -84250522 - MER1A DNA MER1_type 0 527 1 300 192 0 0 chr15 17130227 17130279 -84250242 - MER91B DNA MER1_type -60 130 79 535 283 184 13 chr15 17131269 17131654 -84248867 - MLT1L LTR MaLR -164 451 1 181 296 56 28 chr15 17131660 17131731 -84248790 - L2 LINE L2 -565 2749 2677 852 224 47 47 chr15 17131736 17131950 -84248571 - MER58A DNA MER1_type -3 221 8 2058 154 7 0 chr15 17133729 17134035 -84246486 + AluSc SINE Alu 1 308 -1 1381 182 140 53 chr15 17134138 17134627 -84245894 - LTR61 LTR ERV1 -2 593 1 28 61 0 0 chr15 17135121 17135170 -84245351 + AT_rich Low_complexity Low_complexity 1 49 0 47 61 0 0 chr15 17136214 17136296 -84244225 + AT_rich Low_complexity Low_complexity 1 82 0 396 271 88 123 chr15 17137123 17138032 -84242489 + L1M4 LINE L1 528 1373 -5476 1326 184 42 16 chr15 17140045 17140174 -84240347 - L1MA9 LINE L1 -387 5925 5801 261 0 0 0 chr15 17140174 17140203 -84240318 + (TG)n Simple_repeat Simple_repeat 2 30 0 1326 184 42 16 chr15 17140203 17140382 -84240139 - L1MA9 LINE L1 -511 5801 5609 1294 181 39 4 chr15 17140376 17140657 -84239864 + L1MA9 LINE L1 5972 6262 -50 * 286 187 22 112 chr15 17140909 17141043 -84239478 - L1MEc LINE L1 -4258 2138 2017 1595 118 29 105 chr15 17141044 17141385 -84239136 - AluYb8 SINE Alu 0 317 1 306 0 0 0 chr15 17142563 17142597 -84237924 + (CA)n Simple_repeat Simple_repeat 1 34 0 2128 119 7 10 chr15 17142777 17143079 -84237442 + AluSx SINE Alu 1 301 -11 342 123 231 0 chr15 17145208 17145273 -84235248 + MADE1 DNA Mariner 1 80 0 1080 275 23 26 chr15 17146583 17146815 -84233706 + L1M4 LINE L1 3355 3586 -3262 3033 100 13 11 chr15 17146815 17147277 -84233244 - L1PA10 LINE L1 0 6168 5706 1080 275 23 26 chr15 17147277 17147692 -84232829 + L1M4 LINE L1 3586 4000 -2848 348 125 0 0 chr15 17147890 17147954 -84232567 + (TCTCTG)n Simple_repeat Simple_repeat 3 66 0 2006 86 50 4 chr15 17147954 17148233 -84232288 - AluY SINE Alu -19 292 1 1839 164 3 3 chr15 17151103 17151396 -84229125 - AluSg1 SINE Alu -15 294 2 1322 139 22 0 chr15 17152069 17152292 -84228229 + L1MA4 LINE L1 6070 6297 -3 2095 126 14 3 chr15 17152351 17152645 -84227876 + AluSx SINE Alu 1 297 -15 387 0 0 0 chr15 17153072 17153115 -84227406 + (TG)n Simple_repeat Simple_repeat 1 43 0 522 329 83 28 chr15 17154243 17154678 -84225843 + L1MCb LINE L1 114 572 -5473 2214 128 0 0 chr15 17156811 17157123 -84223398 - AluSx SINE Alu 0 312 1 476 291 41 67 chr15 17157193 17157268 -84223253 - L1MC/D LINE L1 -2069 5716 5641 2168 91 0 4 chr15 17157268 17157572 -84222949 + AluSg1 SINE Alu 6 308 0 476 291 41 67 chr15 17157572 17157839 -84222682 - L1MC/D LINE L1 -2144 5641 5382 1889 244 65 2 chr15 17157870 17158300 -84222221 + LTR32 LTR ERVL 15 471 0 919 299 19 23 chr15 17158318 17158852 -84221669 + HERVL32 LTR ERVL 19 590 -2828 1747 253 20 44 chr15 17158861 17159418 -84221103 + HERVL32 LTR ERVL 2309 2856 -562 1150 253 37 53 chr15 17159538 17160220 -84220301 + HERVL32 LTR ERVL 612 1326 -2092 * 3173 239 65 63 chr15 17160213 17161265 -84219256 + HERVL32 LTR ERVL 1627 2680 -738 1501 216 24 32 chr15 17161291 17161671 -84218850 + MLT1B LTR MaLR 14 390 0 1238 313 55 43 chr15 17163312 17164072 -84216449 + MER89-int LTR ERV1 3526 4294 -2507 1813 178 41 25 chr15 17164883 17165277 -84215244 - L1MA7 LINE L1 -25 6266 5867 648 49 0 0 chr15 17165283 17165364 -84215157 + L1M3 LINE L1 5389 5469 -865 1719 218 39 13 chr15 17165366 17165751 -84214770 - MSTD LTR MaLR -1 395 1 2207 244 150 55 chr15 17165766 17166117 -84214404 - MSTD-int LTR MaLR -17 1718 1402 5103 38 10 3 chr15 17166117 17166731 -84213790 + L1PA3 LINE L1 5538 6155 0 2207 244 150 55 chr15 17166731 17167181 -84213340 - MSTD-int LTR MaLR -333 1402 841 1600 260 30 2 chr15 17167242 17167673 -84212848 - MSTD-int LTR MaLR -1291 444 2 1434 209 38 62 chr15 17167675 17168048 -84212473 - MSTD LTR MaLR 0 396 33 2064 121 4 0 chr15 17171564 17171867 -84208654 - AluSx SINE Alu 0 304 1 625 255 1 10 chr15 17172592 17172774 -84207747 - L1MB1 LINE L1 0 6168 6008 2490 220 39 15 chr15 17172804 17173443 -84207078 - L1 LINE L1 -1888 4258 3601 1969 89 4 0 chr15 17173443 17173717 -84206804 + AluY SINE Alu 38 312 0 512 208 78 13 chr15 17173739 17173893 -84206628 - L1 LINE L1 -2645 3501 3338 263 234 31 8 chr15 17174244 17174372 -84206149 + (TTA)n Simple_repeat Simple_repeat 3 133 0 24 53 0 0 chr15 17174384 17174422 -84206099 + AT_rich Low_complexity Low_complexity 1 38 0 675 274 145 13 chr15 17174565 17174945 -84205576 + MLT1D LTR MaLR 1 430 -75 3971 258 68 25 chr15 17174955 17177275 -84203246 + HERVL74 LTR ERVL 1196 3652 -2033 522 236 51 67 chr15 17177279 17177457 -84203064 + HERVL74 LTR ERVL 3890 4064 -1621 1063 291 43 39 chr15 17177482 17178106 -84202415 + HERVL74 LTR ERVL 4611 5268 -417 603 268 24 24 chr15 17178124 17178329 -84202192 + HERVL74 LTR ERVL 5393 5597 -88 805 285 43 32 chr15 17178387 17178734 -84201787 + MER74B LTR ERVL 60 410 -212 1662 308 102 34 chr15 17180224 17181197 -84199324 - L1M4b LINE L1 -5814 1045 7 243 299 79 46 chr15 17181202 17181530 -84198991 - L1MCa LINE L1 -4761 1665 1327 11974 201 39 30 chr15 17181719 17185078 -84195443 - L1PA13 LINE L1 -3424 3373 1 2353 211 72 15 chr15 17185084 17185629 -84194892 + L1MC3 LINE L1 5580 6155 -1630 * 8067 202 41 8 chr15 17185624 17188257 -84192264 + L1MA9 LINE L1 3356 6081 -231 466 221 31 0 chr15 17188259 17188386 -84192135 + L1MA9 LINE L1 6180 6310 -2 1448 201 36 0 chr15 17188388 17188747 -84191774 + L1 LINE L1 4300 4671 -1475 775 284 90 8 chr15 17188747 17189113 -84191408 - L2 LINE L2 -1564 1750 1355 21 36 0 0 chr15 17189197 17189225 -84191296 + AT_rich Low_complexity Low_complexity 1 28 0 402 406 31 16 chr15 17189981 17190543 -84189978 + L2 LINE L2 2722 3292 -21 2270 74 3 14 chr15 17193137 17193464 -84187057 + AluY SINE Alu 1 324 0 254 73 24 0 chr15 17193595 17193636 -84186885 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 223 302 16 0 chr15 17193812 17193875 -84186646 + (CA)n Simple_repeat Simple_repeat 1 64 0 2199 184 26 16 chr15 17194026 17194456 -84186065 - Tigger2a DNA MER2_type 0 434 1 279 299 0 59 chr15 17195285 17195472 -84185049 + CT-rich Low_complexity Low_complexity 3 178 0 226 290 32 25 chr15 17196227 17196367 -84184154 + MIR SINE MIR 60 197 -65 279 54 0 0 chr15 17197675 17197712 -84182809 + (TA)n Simple_repeat Simple_repeat 2 38 0 1534 109 23 9 chr15 17197820 17198040 -84182481 + PABL_B LTR ERV1 445 667 0 2197 103 3 7 chr15 17198256 17198557 -84181964 + AluSx SINE Alu 1 300 -12 673 161 0 8 chr15 17198557 17198681 -84181840 - AluJo/FLAM SINE Alu -188 124 2 198 71 0 0 chr15 17199104 17199132 -84181389 + (CA)n Simple_repeat Simple_repeat 2 29 0 291 28 0 0 chr15 17199311 17199347 -84181174 + (CA)n Simple_repeat Simple_repeat 1 36 0 213 94 0 0 chr15 17199434 17199466 -84181055 + (CA)n Simple_repeat Simple_repeat 2 33 0 288 0 0 0 chr15 17199549 17199581 -84180940 + (CA)n Simple_repeat Simple_repeat 2 33 0 2064 117 0 0 chr15 17200000 17200274 -84180247 - AluSx SINE Alu -38 274 1 8767 119 16 2 chr15 17200375 17202172 -84178349 - L1P4 LINE L1 -350 5818 4002 281 291 73 24 chr15 17202556 17202707 -84177814 + MIR3 SINE MIR 4 159 -69 272 254 0 0 chr15 17202764 17202819 -84177702 - L2 LINE L2 -8 3264 3210 296 301 44 18 chr15 17202889 17203002 -84177519 + L1MC5 LINE L1 7798 7913 -48 1696 173 16 36 chr15 17203013 17203320 -84177201 - AluJo SINE Alu -11 301 1 322 291 82 6 chr15 17203323 17203481 -84177040 - MIR SINE MIR -59 203 34 447 19 0 0 chr15 17203994 17204046 -84176475 + (TG)n Simple_repeat Simple_repeat 2 53 0 267 203 0 0 chr15 17205084 17205143 -84175378 + (TG)n Simple_repeat Simple_repeat 1 59 0 267 323 54 8 chr15 17205238 17205368 -84175153 + L3 LINE CR1 243 378 -1199 392 259 105 49 chr15 17205423 17205670 -84174851 - L1MC4a LINE L1 -1642 6166 5906 219 140 0 123 chr15 17206062 17206119 -84174402 + L2 LINE L2 3262 3311 -2 457 298 160 0 chr15 17207195 17207383 -84173138 + MIR SINE MIR 42 259 -3 232 243 186 0 chr15 17207498 17207568 -84172953 + L2 LINE L2 3190 3272 -41 222 118 0 0 chr15 17207585 17207619 -84172902 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 1296 218 19 16 chr15 17210185 17210502 -84170019 + MER65A LTR ERV1 1 318 -127 1094 297 54 50 chr15 17210503 17211147 -84169374 - MER89-int LTR ERV1 -1669 5132 4486 701 229 127 0 chr15 17211770 17211927 -84168594 - MER89-int LTR ERV1 -1594 5207 5031 269 313 88 33 chr15 17213045 17213285 -84167236 + L1MCb LINE L1 571 823 -5222 2424 71 0 3 chr15 17213388 17213685 -84166836 + AluY SINE Alu 1 296 -15 7366 37 6 0 chr15 17213743 17214575 -84165946 + L1PA5 LINE L1 5317 6153 -1 567 286 95 42 chr15 17216961 17217391 -84163130 - L1MC4a LINE L1 -601 5732 5280 279 247 43 0 chr15 17217401 17217494 -84163027 - L1MC4a LINE L1 -853 5293 5197 1221 299 39 29 chr15 17217647 17218268 -84162253 - L1MC3 LINE L1 -621 7164 6538 281 231 11 22 chr15 17218340 17218368 -84162153 + (TAGA)n Simple_repeat Simple_repeat 4 31 -62 186 43 0 0 chr15 17218368 17218391 -84162130 + (CATA)n Simple_repeat Simple_repeat 3 25 0 281 231 11 22 chr15 17218391 17218453 -84162068 + (TAGA)n Simple_repeat Simple_repeat 31 93 0 657 283 52 13 chr15 17218681 17218911 -84161610 - MER89-int LTR ERV1 -3076 3725 3487 1981 203 5 3 chr15 17219240 17219614 -84160907 - L1PA16 LINE L1 -290 5876 5502 397 214 0 0 chr15 17219613 17219697 -84160824 - L1P4 LINE L1 -581 5585 5502 * 501 146 0 0 chr15 17219696 17219778 -84160743 - L1P4 LINE L1 -581 5585 5504 2519 219 23 23 chr15 17219778 17220806 -84159715 - L1P4 LINE L1 -580 5586 4562 4756 254 40 19 chr15 17220812 17222325 -84158196 + L1P4 LINE L1 3001 4544 -1602 793 279 50 47 chr15 17222371 17222751 -84157770 - MER89-int LTR ERV1 -2111 4690 4310 696 320 28 41 chr15 17222749 17223112 -84157409 - MER89-int LTR ERV1 -2647 4154 3797 * 483 299 46 10 chr15 17223158 17223352 -84157169 - MER89-int LTR ERV1 -3095 3706 3506 366 136 0 0 chr15 17223938 17223997 -84156524 + Alu SINE Alu 242 300 -2 1850 155 0 0 chr15 17225522 17225799 -84154722 + AluSx SINE Alu 11 287 -25 1126 228 36 69 chr15 17227072 17227463 -84153058 + MLT1B LTR MaLR 2 379 -11 200 303 108 59 chr15 17228426 17228750 -84151771 - L2 LINE L2 -1648 1666 1327 407 260 69 98 chr15 17228834 17229007 -84151514 - L1M4c LINE L1 -4258 2475 1928 1493 230 22 0 chr15 17229008 17229325 -84151196 + MER7A DNA MER2_type 2 323 -23 2025 126 3 20 chr15 17229330 17229632 -84150889 - AluSx SINE Alu -15 297 1 568 318 30 35 chr15 17229682 17230050 -84150471 - L1M4c LINE L1 -4874 1779 1414 262 340 0 0 chr15 17230341 17230447 -84150074 + L1MCb LINE L1 726 831 -5214 404 152 0 29 chr15 17231892 17231997 -84148524 + (TG)n Simple_repeat Simple_repeat 2 103 0 674 262 83 53 chr15 17233743 17234283 -84146238 - L1MC/D LINE L1 -771 5375 5170 23 33 0 0 chr15 17234308 17234338 -84146183 + AT_rich Low_complexity Low_complexity 1 30 0 2175 277 92 14 chr15 17234449 17235320 -84145201 - L1MC3 LINE L1 -657 7128 6190 391 288 75 27 chr15 17235286 17235581 -84144940 + L1MC3 LINE L1 5904 6212 -1573 * 26 0 0 0 chr15 17235684 17235710 -84144811 + AT_rich Low_complexity Low_complexity 1 26 0 1855 102 102 0 chr15 17239691 17239957 -84140564 + AluSp SINE Alu 1 293 -20 22 35 0 0 chr15 17240049 17240078 -84140443 + AT_rich Low_complexity Low_complexity 1 29 0 264 30 0 0 chr15 17240150 17240183 -84140338 + (TG)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr15 17240195 17240217 -84140304 + AT_rich Low_complexity Low_complexity 1 22 0 424 284 70 0 chr15 17240749 17240950 -84139571 - L1MD3 LINE L1 -11 7984 7770 317 289 86 0 chr15 17241269 17241421 -84139100 - L1MEc LINE L1 -3711 2715 2551 317 291 101 4 chr15 17241509 17241736 -84138785 - L1MEc LINE L1 -4093 2333 2085 236 306 55 25 chr15 17241752 17242091 -84138430 - L1MEc LINE L1 -4395 2031 1680 320 228 30 30 chr15 17243165 17243266 -84137255 + L1ME LINE L1 5698 5798 -368 1174 286 101 14 chr15 17243335 17243970 -84136551 + L1PA13 LINE L1 529 1258 -5529 2358 168 21 9 chr15 17243973 17244397 -84136124 + L1PA13 LINE L1 1396 1824 -4963 * 2959 210 34 16 chr15 17244389 17245127 -84135394 + L1MA7 LINE L1 5541 6291 0 378 279 80 15 chr15 17245150 17245351 -84135170 + L1M4 LINE L1 5184 5397 -749 462 81 23 23 chr15 17245477 17245563 -84134958 + (GAAA)n Simple_repeat Simple_repeat 4 89 0 221 32 0 32 chr15 17245563 17245594 -84134927 + (GGGA)n Simple_repeat Simple_repeat 2 31 0 498 311 0 0 chr15 17246018 17246153 -84134368 + MER70B LTR ERVL 90 224 -354 367 271 211 12 chr15 17246191 17246438 -84134083 - L1MCa LINE L1 -4206 2220 1925 * 1528 160 18 0 chr15 17246430 17246711 -84133810 - L1 LINE L1 -1404 4742 4457 395 174 0 54 chr15 17246730 17246822 -84133699 + L1MA2 LINE L1 6218 6304 0 625 292 65 26 chr15 17246885 17247366 -84133155 + L1MC3 LINE L1 5254 6040 -160 672 305 38 0 chr15 17247504 17247717 -84132804 - HERVL74 LTR ERVL -3785 1900 1680 2035 130 0 17 chr15 17248303 17248596 -84131925 + AluSx SINE Alu 5 292 -20 399 220 0 0 chr15 17248598 17248689 -84131832 + (TA)n Simple_repeat Simple_repeat 1 91 0 3692 35 12 5 chr15 17248862 17249291 -84131230 + L1PA3 LINE L1 5723 6154 -1 1474 277 63 39 chr15 17249292 17250244 -84130277 + L1MA3 LINE L1 2265 3403 -4163 2762 247 38 23 chr15 17250385 17251256 -84129265 + L1P LINE L1 2790 3673 -2473 3642 203 60 5 chr15 17251259 17252130 -84128391 + L1MA3 LINE L1 4418 5336 -2229 * 6489 131 31 1 chr15 17252124 17253204 -84127317 + L1MA3 LINE L1 6614 7724 0 3791 190 51 29 chr15 17253198 17253852 -84126669 + L1 LINE L1 3026 3711 -2435 * 216 0 0 0 chr15 17253852 17253876 -84126645 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 3791 190 51 29 chr15 17253876 17254216 -84126305 + L1 LINE L1 3711 4042 -2104 1874 204 25 32 chr15 17254218 17254625 -84125896 + MSTB LTR MaLR 23 426 0 713 296 16 11 chr15 17254729 17254915 -84125606 + L2 LINE L2 2889 3075 -238 674 191 0 4 chr15 17254918 17255050 -84125471 + L1MA7 LINE L1 5997 6133 -167 1044 191 123 52 chr15 17255051 17255360 -84125161 + MER2 DNA MER2_type 12 342 -3 608 150 78 7 chr15 17255362 17255515 -84125006 + L1MA8 LINE L1 6107 6270 -21 399 275 69 61 chr15 17255801 17256048 -84124473 + L2 LINE L2 3065 3313 0 36 0 0 0 chr15 17256051 17256087 -84124434 + AT_rich Low_complexity Low_complexity 1 36 0 198 287 0 0 chr15 17256428 17256515 -84124006 + C-rich Low_complexity Low_complexity 1 87 0 1956 137 0 0 chr15 17257020 17257319 -84123202 - AluSq SINE Alu -14 299 1 786 180 0 0 chr15 17257942 17258120 -84122401 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 486 300 33 42 chr15 17258120 17258360 -84122161 - MIR SINE MIR -12 250 13 236 184 224 31 chr15 17258492 17258590 -84121931 - MER103 DNA DNA -43 123 7 1795 239 86 23 chr15 17259446 17259922 -84120599 + MER77 LTR ERV1 64 569 -36 5472 84 5 5 chr15 17260227 17260962 -84119559 - L1PA10 LINE L1 -9 6159 5425 231 319 17 17 chr15 17261063 17261179 -84119342 + G-rich Low_complexity Low_complexity 4 119 0 1815 137 0 0 chr15 17261646 17261930 -84118591 + AluSx SINE Alu 18 301 -11 2171 103 0 10 chr15 17262087 17262397 -84118124 + AluSx SINE Alu 1 307 -5 2017 132 0 0 chr15 17262609 17262913 -84117608 + AluSx SINE Alu 1 304 -8 1335 172 47 0 chr15 17263189 17263445 -84117076 - AluJo SINE Alu -15 297 30 231 175 62 0 chr15 17263482 17263537 -84116984 + Alu SINE Alu 1 50 -253 2682 86 25 171 chr15 17263667 17264227 -84116294 - THE1C-int LTR MaLR -1102 478 1 1753 116 99 63 chr15 17264227 17264275 -84116246 - THE1C LTR MaLR 0 375 330 2144 95 3 0 chr15 17264275 17264609 -84115912 - AluY SINE Alu 0 335 1 2241 87 3 3 chr15 17264610 17264910 -84115611 - AluY SINE Alu -11 300 1 1753 116 99 63 chr15 17264910 17265220 -84115301 - THE1C LTR MaLR -44 331 1 834 181 0 62 chr15 17265220 17265238 -84115283 - AluJo SINE Alu -161 151 133 2222 90 0 3 chr15 17265238 17265538 -84114983 - AluY SINE Alu -12 299 1 1936 143 0 3 chr15 17265538 17265838 -84114683 - AluSx SINE Alu -12 300 1 834 181 0 62 chr15 17265838 17265978 -84114543 - AluJo SINE Alu -177 135 2 676 138 35 9 chr15 17265978 17266094 -84114427 - MLT1D LTR MaLR -386 119 1 250 276 198 0 chr15 17266180 17266295 -84114226 + Charlie7 DNA MER1_type 29 166 -2446 302 275 24 0 chr15 17266295 17266415 -84114106 - LTR50 LTR ERVL 0 795 402 959 273 85 48 chr15 17266491 17266546 -84113975 + Charlie7 DNA MER1_type 220 271 -2341 1704 178 0 3 chr15 17266546 17266850 -84113671 - AluJo SINE Alu -6 306 4 959 273 85 48 chr15 17266850 17267278 -84113243 + Charlie7 DNA MER1_type 271 721 -1891 407 261 5 72 chr15 17267277 17267327 -84113194 + Charlie7 DNA MER1_type 2420 2472 -140 * 2069 114 7 0 chr15 17267327 17267617 -84112904 + AluSx SINE Alu 1 292 -20 407 261 5 72 chr15 17267617 17267773 -84112748 + Charlie7 DNA MER1_type 2472 2612 0 2078 121 3 0 chr15 17267817 17268115 -84112406 + AluSq SINE Alu 1 299 -14 202 321 0 18 chr15 17268325 17268381 -84112140 - L2 LINE L2 -209 3063 3009 323 190 0 0 chr15 17268394 17268452 -84112069 - THE1A LTR MaLR -76 279 222 244 250 0 0 chr15 17268483 17268527 -84111994 + AluJ/monomer SINE Alu 1 44 -89 293 151 31 0 chr15 17268646 17268710 -84111811 + MIR SINE MIR 75 146 -62 320 294 0 12 chr15 17269460 17269545 -84110976 + MIR SINE MIR 5 88 -174 251 288 129 23 chr15 17269720 17269852 -84110669 - L1ME4a LINE L1 -38 6083 5938 411 252 64 9 chr15 17272115 17272242 -84108279 + MIR SINE MIR 34 173 -62 275 190 17 17 chr15 17272687 17272745 -84107776 - MLT1K LTR MaLR -8 580 523 28 29 0 0 chr15 17272750 17272785 -84107736 + AT_rich Low_complexity Low_complexity 1 35 0 2218 83 0 3 chr15 17272791 17273080 -84107441 - AluSq SINE Alu -25 288 1 485 200 147 74 chr15 17273081 17273271 -84107250 - MLT1K LTR MaLR -58 530 327 435 234 8 62 chr15 17273330 17273458 -84107063 + MLT1G LTR MaLR 93 213 -377 396 193 125 0 chr15 17273462 17273550 -84106971 + MLT1G LTR MaLR 471 569 -21 980 170 0 6 chr15 17273976 17274147 -84106374 + AluJb SINE Alu 121 290 -22 1905 155 0 13 chr15 17274150 17274466 -84106055 + AluSx SINE Alu 1 312 0 851 232 171 20 chr15 17274703 17275026 -84105495 - MLT1J LTR MaLR 0 493 139 2376 190 17 85 chr15 17275032 17275547 -84104974 - MER41D LTR ERV1 -22 535 61 2127 109 0 28 chr15 17275547 17275868 -84104653 - AluSq SINE Alu -1 312 1 2376 190 17 85 chr15 17275868 17275926 -84104595 - MER41D LTR ERV1 -496 61 1 500 259 30 15 chr15 17275926 17276061 -84104460 - MLT1J LTR MaLR -371 140 4 2011 90 54 0 chr15 17276141 17276420 -84104101 + AluY SINE Alu 1 294 -17 353 266 146 70 chr15 17276420 17276547 -84103974 + MIR SINE MIR 22 138 -124 1486 189 34 0 chr15 17276547 17276844 -84103677 - AluJo SINE Alu -5 307 1 373 221 110 31 chr15 17276845 17277008 -84103513 + MER104 DNA MER2_type 2 177 -3 353 266 146 70 chr15 17277008 17277077 -84103444 + MIR SINE MIR 137 235 -27 772 84 6 39 chr15 17277387 17277565 -84102956 + (TTAGGG)n Simple_repeat Simple_repeat 5 176 0 518 152 5 33 chr15 17277626 17277810 -84102711 + (TTAGGG)n Simple_repeat Simple_repeat 2 180 0 402 147 0 37 chr15 17277854 17277963 -84102558 + (TTAGGG)n Simple_repeat Simple_repeat 4 108 0 914 258 119 12 chr15 17277994 17278413 -84102108 - MLT1C LTR MaLR -3 464 1 1758 154 0 14 chr15 17279180 17279465 -84101056 - AluJo SINE Alu -21 291 11 1720 252 89 19 chr15 17279484 17280047 -84100474 - MER20B DNA MER1_type -34 749 148 688 268 10 20 chr15 17280413 17280611 -84099910 + MIR SINE MIR 17 212 -50 2126 113 7 0 chr15 17280618 17280919 -84099602 - AluSp SINE Alu -10 303 1 1607 233 37 17 chr15 17281063 17281509 -84099012 - L1MB5 LINE L1 -58 6116 5665 203 276 181 9 chr15 17281572 17281677 -84098844 + MIR SINE MIR 31 153 -109 818 242 14 28 chr15 17281842 17282053 -84098468 - MER63A DNA MER1_type 0 210 3 285 286 164 21 chr15 17282287 17282427 -84098094 + MLT1L LTR MaLR 226 385 -230 1964 107 0 0 chr15 17282931 17283194 -84097327 + AluSc SINE Alu 16 278 -31 183 80 0 0 chr15 17283197 17283222 -84097299 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 1038 126 16 33 chr15 17284660 17284842 -84095679 + AluJo SINE Alu 39 217 -95 266 152 0 0 chr15 17284843 17284894 -84095627 + AluJb SINE Alu 84 125 -177 1308 167 0 67 chr15 17284921 17285220 -84095301 + AluJo SINE Alu 7 285 -27 1946 117 0 0 chr15 17285244 17285518 -84095003 + AluSx SINE Alu 1 274 -38 306 0 0 0 chr15 17285937 17285971 -84094550 + (TG)n Simple_repeat Simple_repeat 2 35 0 213 94 0 0 chr15 17286054 17286086 -84094435 + (TG)n Simple_repeat Simple_repeat 2 33 0 315 0 0 0 chr15 17286171 17286206 -84094315 + (TG)n Simple_repeat Simple_repeat 1 35 0 198 71 0 0 chr15 17286385 17286413 -84094108 + (TG)n Simple_repeat Simple_repeat 2 29 0 369 0 0 0 chr15 17286502 17286543 -84093978 + (TG)n Simple_repeat Simple_repeat 1 41 0 198 71 0 0 chr15 17286722 17286750 -84093771 + (TG)n Simple_repeat Simple_repeat 2 29 0 707 153 0 8 chr15 17287173 17287297 -84093224 + AluJo/FLAM SINE Alu 2 124 -188 2122 107 3 0 chr15 17287297 17287596 -84092925 - AluSx SINE Alu -12 300 1 1055 127 0 13 chr15 17287812 17287969 -84092552 - PABL_B LTR ERV1 0 667 513 421 239 75 93 chr15 17288525 17288996 -84091525 + L1ME2 LINE L1 1790 6101 -132 2091 114 13 0 chr15 17289057 17289363 -84091158 + AluSg SINE Alu 1 310 0 225 171 0 0 chr15 17289390 17289431 -84091090 + L1ME2 LINE L1 6179 6219 -14 662 235 47 35 chr15 17289785 17289955 -84090566 + MIR SINE MIR 69 240 -22 31439 105 8 20 chr15 17290955 17296423 -84084098 + L1PA7 LINE L1 1 5487 -982 258 56 0 0 chr15 17296423 17296459 -84084062 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 31439 105 8 20 chr15 17296459 17297403 -84083118 + L1PA7 LINE L1 5487 6440 -29 887 208 62 21 chr15 17297403 17297644 -84082877 + MER96B DNA MER1_type? 144 394 -23 33 80 0 0 chr15 17297884 17297959 -84082562 + AT_rich Low_complexity Low_complexity 1 75 0 222 370 0 0 chr15 17298102 17298202 -84082319 + GA-rich Low_complexity Low_complexity 3 102 0 3159 121 11 6 chr15 17298289 17298759 -84081762 + MER84 LTR ERVI 36 507 0 1011 105 0 25 chr15 17299268 17299430 -84081091 + L1P4 LINE L1 5333 5490 -671 2467 47 0 19 chr15 17299430 17299747 -84080774 + AluY SINE Alu 1 311 0 2070 264 99 42 chr15 17299937 17300505 -84080016 - L1M4 LINE L1 -1822 4324 3790 2188 84 7 0 chr15 17300505 17300802 -84079719 + AluY SINE Alu 1 299 -12 2070 264 99 42 chr15 17300802 17301376 -84079145 - L1M4 LINE L1 -2356 3790 3117 * 3324 157 51 16 chr15 17301375 17302194 -84078327 - L1PA15 LINE L1 -324 5841 4984 775 41 0 10 chr15 17302194 17302291 -84078230 + L1PA4 LINE L1 6057 6152 -3 3324 157 51 16 chr15 17302291 17302606 -84077915 - L1PA15 LINE L1 -1181 4984 4681 9612 237 22 37 chr15 17302607 17306939 -84073582 - L1PA12 LINE L1 -816 6768 2554 6392 231 31 15 chr15 17306964 17308690 -84071831 + L1PA15 LINE L1 2143 3896 -2250 1704 196 43 0 chr15 17308679 17309051 -84071470 + L1PA15 LINE L1 4846 5233 -913 * 1088 99 13 0 chr15 17309053 17309204 -84071317 + AluSc SINE Alu 150 302 -7 2260 101 0 3 chr15 17309214 17309510 -84071011 + AluSq SINE Alu 1 295 -18 5110 127 6 10 chr15 17309511 17310322 -84070199 + L1PA15 LINE L1 5357 6164 -1 1077 290 110 54 chr15 17310368 17312528 -84067993 - L1PA12 LINE L1 -5025 2556 22 204 140 40 20 chr15 17312749 17312799 -84067722 + T-rich Low_complexity Low_complexity 5 55 0 1857 220 80 78 chr15 17313475 17314112 -84066409 + LTR9B LTR ERV1 7 644 0 401 158 29 0 chr15 17314297 17314436 -84066085 + (TA)n Simple_repeat Simple_repeat 2 144 0 43 0 0 0 chr15 17314441 17314484 -84066037 + AT_rich Low_complexity Low_complexity 1 43 0 201 379 107 12 chr15 17314612 17314781 -84065740 + L2 LINE L2 2725 2909 -405 250 258 11 75 chr15 17314793 17314886 -84065635 + L2 LINE L2 3184 3270 -2 351 280 57 45 chr15 17316234 17316391 -84064130 + L1ME1 LINE L1 5998 6156 -10 1829 154 32 0 chr15 17317127 17317412 -84063109 + AluSx SINE Alu 1 294 -18 23 0 0 0 chr15 17318380 17318403 -84062118 + AT_rich Low_complexity Low_complexity 1 23 0 249 328 0 35 chr15 17318470 17318644 -84061877 + T-rich Low_complexity Low_complexity 2 169 0 39 22 0 0 chr15 17320813 17320859 -84059662 + AT_rich Low_complexity Low_complexity 1 46 0 716 307 137 30 chr15 17321418 17322142 -84058379 - L2 LINE L2 -34 3279 2474 28 79 0 0 chr15 17322212 17322275 -84058246 + AT_rich Low_complexity Low_complexity 1 63 0 1663 268 39 40 chr15 17322434 17323113 -84057408 - L1ME2 LINE L1 -16 6148 5465 1754 191 148 41 chr15 17323116 17323604 -84056917 + MER74A LTR ERVL 19 558 0 437 194 31 0 chr15 17324118 17324216 -84056305 - L1ME2 LINE L1 -744 5418 5318 527 244 39 17 chr15 17324258 17324488 -84056033 - L1ME2 LINE L1 -916 5230 4996 1847 164 13 0 chr15 17324600 17324905 -84055616 + AluSx SINE Alu 1 309 -3 3137 167 22 4 chr15 17325031 17325571 -84054950 + MER44D DNA MER2_type 1 605 0 385 226 11 11 chr15 17325571 17325656 -84054865 + L1MC4 LINE L1 6616 6703 -1339 180 0 0 0 chr15 17325656 17325676 -84054845 + (TG)n Simple_repeat Simple_repeat 2 21 0 26 82 0 0 chr15 17326033 17326094 -84054427 + AT_rich Low_complexity Low_complexity 1 61 0 711 203 120 52 chr15 17326586 17326778 -84053743 - MER20 DNA MER1_type -2 217 13 23 0 0 0 chr15 17330535 17330558 -84049963 + AT_rich Low_complexity Low_complexity 1 23 0 462 18 0 0 chr15 17332121 17332176 -84048345 + (CA)n Simple_repeat Simple_repeat 1 55 0 370 289 141 34 chr15 17332384 17332527 -84047994 - L2 LINE L2 0 3313 3187 223 27 27 27 chr15 17332527 17332564 -84047957 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 370 289 141 34 chr15 17332564 17332683 -84047838 - L2 LINE L2 -126 3187 3023 404 316 188 31 chr15 17332834 17332977 -84047544 - L2 LINE L2 0 3313 3194 223 27 27 27 chr15 17332977 17333014 -84047507 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 404 316 188 31 chr15 17333014 17333284 -84047237 - L2 LINE L2 -119 3194 2835 212 390 39 0 chr15 17333348 17333425 -84047096 - L2 LINE L2 -582 2732 2653 432 0 0 0 chr15 17333435 17333483 -84047038 + (TA)n Simple_repeat Simple_repeat 2 49 0 270 259 89 27 chr15 17334161 17334273 -84046248 + MIR3 SINE MIR 82 200 -8 270 242 17 39 chr15 17334682 17334860 -84045661 + (TTATA)n Simple_repeat Simple_repeat 2 175 0 298 90 51 13 chr15 17334862 17334940 -84045581 + (TA)n Simple_repeat Simple_repeat 2 82 0 1768 145 28 3 chr15 17334988 17335270 -84045251 - MER72 LTR ERV1 0 722 434 1691 191 3 7 chr15 17335272 17335571 -84044950 - MER72 LTR ERV1 -420 302 5 574 206 59 7 chr15 17335581 17335717 -84044804 + MIR SINE MIR 45 187 -75 305 309 100 0 chr15 17335976 17336086 -84044435 + L2 LINE L2 3152 3272 0 22498 28 0 0 chr15 17336434 17339913 -84040608 + L1PA2 LINE L1 2702 6180 0 2341 194 27 27 chr15 17341114 17341636 -84038885 + L1MA9 LINE L1 5267 5783 -385 674 336 47 26 chr15 17341631 17342059 -84038462 + L1MA9 LINE L1 1360 1796 -5700 * 1021 274 102 85 chr15 17342158 17343148 -84037373 - MER52A LTR ERV1 0 1755 630 11615 218 67 27 chr15 17343210 17347879 -84032642 + L1MA9 LINE L1 2061 7021 -710 2428 128 8 31 chr15 17347879 17348263 -84032258 + THE1C LTR MaLR 1 375 0 11615 218 67 27 chr15 17348263 17349005 -84031516 + L1MA9 LINE L1 7021 7731 0 301 98 0 20 chr15 17349000 17349051 -84031470 + L1MA9 LINE L1 5771 5820 -492 * 2026 157 31 19 chr15 17349057 17349472 -84031049 + L1MA9 LINE L1 5892 6311 -1 426 217 33 0 chr15 17349985 17350077 -84030444 + U13 snRNA snRNA 1 95 -9 719 317 117 14 chr15 17350136 17350717 -84029804 - HAL1 LINE L1 -726 1781 1141 424 280 45 91 chr15 17351243 17351486 -84029035 - HAL1 LINE L1 -2185 322 91 204 216 39 0 chr15 17352742 17352793 -84027728 + A-rich Low_complexity Low_complexity 4 56 0 24 0 0 0 chr15 17354484 17354508 -84026013 + AT_rich Low_complexity Low_complexity 1 24 0 456 325 74 12 chr15 17355237 17355400 -84025121 + MIR SINE MIR 20 192 -70 432 263 109 6 chr15 17355616 17355772 -84024749 - MIR SINE MIR 0 262 91 980 144 0 0 chr15 17355938 17356084 -84024437 - AluSg/x SINE Alu -23 289 144 1071 269 13 8 chr15 17356273 17356511 -84024010 - MIR SINE MIR -22 240 2 711 265 59 14 chr15 17357258 17357477 -84023044 + MIR SINE MIR 33 261 -1 180 363 99 0 chr15 17358696 17358787 -84021734 - L2 LINE L2 0 3272 3173 229 318 47 54 chr15 17358886 17359015 -84021506 - MIR3 SINE MIR -31 177 50 215 61 30 0 chr15 17359407 17359440 -84021081 + (TC)n Simple_repeat Simple_repeat 1 34 0 395 200 27 36 chr15 17360067 17360177 -84020344 + L1MA8 LINE L1 6180 6288 -3 457 189 147 32 chr15 17360440 17360630 -84019891 + L1MC3 LINE L1 7574 7785 0 2397 144 100 4 chr15 17360718 17361168 -84019353 - L1PA16 LINE L1 -2 6164 5672 420 49 98 0 chr15 17361186 17361308 -84019213 + (TA)n Simple_repeat Simple_repeat 1 134 0 2034 187 21 15 chr15 17361346 17362035 -84018486 - L1PA16 LINE L1 -534 5632 4939 * 2978 215 12 19 chr15 17362034 17362805 -84017716 + L1PB4 LINE L1 3061 3825 -2321 2107 113 21 0 chr15 17363727 17364018 -84016503 + AluSq SINE Alu 1 297 -16 1341 222 50 7 chr15 17364441 17364743 -84015778 + MSTB LTR MaLR 100 414 -12 748 155 0 0 chr15 17365016 17365132 -84015389 - AluSg/x SINE Alu -21 291 176 271 259 52 26 chr15 17365142 17365258 -84015263 - HAL1b LINE L1 -539 809 691 340 238 156 19 chr15 17365317 17365477 -84015044 - L1ME3A LINE L1 -182 5988 5807 825 61 4 7 chr15 17365597 17365722 -84014799 + MER30B DNA MER1_type 4 106 -84 261 57 0 0 chr15 17365847 17365882 -84014639 + (TC)n Simple_repeat Simple_repeat 1 35 0 362 275 62 42 chr15 17365892 17366097 -84014424 + MLT1B LTR MaLR 181 367 -7 825 291 55 30 chr15 17366212 17366610 -84013911 + MLT1B-int LTR MaLR 264 671 -700 411 358 19 35 chr15 17366909 17367166 -84013355 + MLT1B-int LTR MaLR 1238 1490 -245 3856 218 37 9 chr15 17367866 17369163 -84011358 + L1PB4 LINE L1 4814 6152 -4 21 0 0 0 chr15 17369179 17369200 -84011321 + AT_rich Low_complexity Low_complexity 1 21 0 2078 118 7 11 chr15 17369234 17369512 -84011009 + AluSg SINE Alu 3 281 -29 234 81 0 0 chr15 17369512 17369549 -84010972 + (TATAA)n Simple_repeat Simple_repeat 2 38 0 1476 264 56 38 chr15 17369561 17370322 -84010199 + L1MD2 LINE L1 5117 5896 -463 1762 312 117 26 chr15 17370324 17371414 -84009107 - L1M4b LINE L1 -5650 1209 21 234 262 48 64 chr15 17371479 17371666 -84008855 - L1M1 LINE L1 -4708 1718 1422 622 240 89 27 chr15 17372041 17372266 -84008255 - LTR52-int LTR ERVL -3297 259 21 1019 250 47 47 chr15 17372317 17372697 -84007824 - LTR52 LTR ERVL -38 383 4 4029 201 52 5 chr15 17373058 17373931 -84006590 - MER49 LTR ERV1 -9 914 1 355 248 128 18 chr15 17373937 17374046 -84006475 - MER89-int LTR ERV1 -1653 5148 5028 24 0 0 0 chr15 17374046 17374070 -84006451 + AT_rich Low_complexity Low_complexity 1 24 0 486 266 146 31 chr15 17375858 17376084 -84004437 - MIR SINE MIR 0 262 11 366 311 16 8 chr15 17376135 17376257 -84004264 + MIR SINE MIR 74 196 -66 310 265 183 27 chr15 17376340 17376515 -84004006 - MIR SINE MIR -40 222 30 3130 21 5 3 chr15 17377451 17377825 -84002696 - L1PA4 LINE L1 -5 6150 5776 4364 34 0 0 chr15 17377825 17378349 -84002172 + L1PA4 LINE L1 5275 5798 -357 421 287 28 101 chr15 17378674 17378921 -84001600 - MLT1J LTR MaLR -9 502 274 24 0 0 0 chr15 17379348 17379372 -84001149 + AT_rich Low_complexity Low_complexity 1 24 0 7545 24 7 0 chr15 17379430 17380684 -83999837 + L1PA3 LINE L1 4910 6169 0 22 0 0 0 chr15 17380688 17380710 -83999811 + AT_rich Low_complexity Low_complexity 1 22 0 250 260 111 52 chr15 17383195 17383381 -83997140 - MIR SINE MIR -67 195 4 382 250 167 21 chr15 17383543 17383831 -83996690 + L1ME4a LINE L1 5781 6110 -11 492 204 0 0 chr15 17384006 17384099 -83996422 + LTR55 LTR ERV 1 93 -455 717 266 31 0 chr15 17384126 17384348 -83996173 + LTR55 LTR ERV 235 463 -85 444 352 142 4 chr15 17384803 17385084 -83995437 - L3 LINE CR1 -159 1418 1099 2309 168 44 36 chr15 17386166 17386697 -83993824 - Ricksha DNA DNA -18 3228 2745 1128 167 33 12 chr15 17386697 17386937 -83993584 + L1MA5 LINE L1 6056 6300 0 2309 168 44 36 chr15 17386937 17386953 -83993568 - Ricksha DNA DNA -501 2745 2731 2509 120 69 5 chr15 17388357 17388765 -83991756 - MER57B LTR ERV1 0 434 1 5419 56 0 9 chr15 17389072 17389765 -83990756 - L1PA7 LINE L1 -1 6153 5467 3208 86 8 1 chr15 17389765 17390299 -83990222 + L1PA7 LINE L1 4936 5471 -701 308 207 17 0 chr15 17390299 17390357 -83990164 - MER5A DNA MER1_type -118 71 13 225 361 45 69 chr15 17390625 17391002 -83989519 - L2 LINE L2 0 3313 2946 * 237 343 56 9 chr15 17390996 17391104 -83989417 - L2 LINE L2 -579 2735 2623 940 151 11 11 chr15 17391136 17391315 -83989206 - Looper DNA T2_type -1376 182 4 341 156 52 0 chr15 17391457 17391534 -83988987 + L1MB5 LINE L1 6028 6108 -66 1053 295 91 15 chr15 17391691 17392098 -83988423 + LTR16C LTR ERVL 37 474 -17 497 331 81 73 chr15 17392156 17392714 -83987807 - L2 LINE L2 -934 2380 1819 734 305 5 0 chr15 17392734 17392924 -83987597 + L2 LINE L2 2885 3075 -238 619 159 26 0 chr15 17392927 17393040 -83987481 + L1MA9 LINE L1 5993 6108 -204 1070 210 0 0 chr15 17393041 17393246 -83987275 + MER2 DNA MER2_type 1 205 -140 398 222 14 0 chr15 17393280 17393352 -83987169 + MER2 DNA MER2_type 270 342 -3 982 123 67 20 chr15 17393356 17393551 -83986970 + L1MA9 LINE L1 6109 6312 0 321 313 78 39 chr15 17393562 17393792 -83986729 + L2 LINE L2 3075 3313 0 30 0 0 0 chr15 17393793 17393823 -83986698 + AT_rich Low_complexity Low_complexity 1 30 0 202 73 49 0 chr15 17395155 17395196 -83985325 + (TA)n Simple_repeat Simple_repeat 2 44 0 1600 158 3 74 chr15 17396153 17396464 -83984057 - AluJb SINE Alu -20 292 4 254 342 13 0 chr15 17396685 17396764 -83983757 + MER5A DNA MER1_type 110 189 0 1137 268 37 12 chr15 17396991 17397526 -83982995 + L1M3c LINE L1 2155 2977 -4519 747 244 114 55 chr15 17397527 17398203 -83982318 + L1M3c LINE L1 2843 3558 -4007 1099 219 0 0 chr15 17398217 17398427 -83982094 + MER2 DNA MER2_type 1 210 -135 4924 244 48 26 chr15 17398534 17400276 -83980245 + L1M3c LINE L1 3566 5344 -2221 2174 130 0 0 chr15 17400277 17400584 -83979937 + AluSc SINE Alu 1 307 -2 8462 185 24 7 chr15 17400588 17402115 -83978406 + L1M1 LINE L1 10 1561 -6004 403 337 96 11 chr15 17402791 17402969 -83977552 + MIR3 SINE MIR 2 194 -14 3214 34 0 3 chr15 17405585 17405971 -83974550 + L1PA5 LINE L1 5763 6147 -7 33 0 0 0 chr15 17405974 17406007 -83974514 + AT_rich Low_complexity Low_complexity 1 33 0 1607 165 28 31 chr15 17406242 17406594 -83973927 - L1MA7 LINE L1 0 6291 5941 2533 184 13 4 chr15 17406595 17407058 -83973463 + L1MA7 LINE L1 5436 5902 -389 496 293 88 61 chr15 17407257 17407542 -83972979 - LTR67 LTR ERVL -4 553 250 2233 81 10 10 chr15 17407542 17407849 -83972672 - AluY SINE Alu -4 307 1 496 293 88 61 chr15 17407849 17408004 -83972517 - LTR67 LTR ERVL -307 250 101 405 0 0 0 chr15 17408097 17408142 -83972379 + (CA)n Simple_repeat Simple_repeat 2 46 0 1085 167 44 4 chr15 17409396 17409623 -83970898 + MER33 DNA MER1_type 1 236 -88 835 256 90 50 chr15 17409919 17410220 -83970301 + L2 LINE L2 2995 3307 -6 189 228 51 51 chr15 17410269 17410348 -83970173 - L2 LINE L2 -71 3242 3164 3604 43 11 0 chr15 17411978 17412417 -83968104 - L1PA4 LINE L1 -136 6019 5576 219 298 181 11 chr15 17413543 17413637 -83966884 - L2 LINE L2 -5 3308 3199 497 274 67 0 chr15 17416470 17416605 -83963916 + MLT1J1 LTR MaLR 28 171 -275 2163 122 7 3 chr15 17416769 17417073 -83963448 + AluSx SINE Alu 1 305 -7 520 295 32 26 chr15 17417994 17418184 -83962337 - MLT1I LTR MaLR -218 191 1 22 0 0 0 chr15 17418363 17418385 -83962136 + AT_rich Low_complexity Low_complexity 1 22 0 187 361 0 12 chr15 17418870 17418953 -83961568 - L2 LINE L2 -2 3311 3230 736 301 82 75 chr15 17418996 17419691 -83960830 - L2 LINE L2 -926 2388 1689 679 180 0 0 chr15 17420185 17420313 -83960208 - L1MA4 LINE L1 -10 6290 6163 561 287 54 49 chr15 17420320 17420632 -83959889 - L1MC4a LINE L1 -1879 5929 5613 2242 117 0 0 chr15 17420632 17420932 -83959589 - AluSx SINE Alu -12 300 1 561 287 54 49 chr15 17420932 17420988 -83959533 - L1MC4a LINE L1 -2195 5613 5559 897 97 28 0 chr15 17421699 17421844 -83958677 - L1MA6 LINE L1 0 6300 6152 2276 101 10 0 chr15 17421909 17422207 -83958314 - AluSg SINE Alu -9 301 1 288 53 0 0 chr15 17422926 17422964 -83957557 + (CA)n Simple_repeat Simple_repeat 1 38 0 206 215 0 114 chr15 17423374 17423453 -83957068 - MIR SINE MIR -97 165 96 255 339 170 27 chr15 17424395 17424725 -83955796 + L2 LINE L2 2463 2839 -475 565 321 27 0 chr15 17425416 17425600 -83954921 - MIR SINE MIR -6 256 68 204 211 0 0 chr15 17425737 17425775 -83954746 + (CA)n Simple_repeat Simple_repeat 1 38 0 11353 165 19 0 chr15 17425840 17427968 -83952553 + L1PA13 LINE L1 2006 4188 -2609 1439 126 82 0 chr15 17427943 17428198 -83952323 + L1PA13 LINE L1 4426 4701 -2096 * 723 150 136 7 chr15 17428208 17428348 -83952173 + Tigger1 DNA MER2_type 2259 2416 -2 368 310 32 39 chr15 17428763 17428918 -83951603 + MIR SINE MIR 1 154 -108 23 54 0 0 chr15 17429109 17429146 -83951375 + AT_rich Low_complexity Low_complexity 1 37 0 32 57 0 0 chr15 17429363 17429416 -83951105 + AT_rich Low_complexity Low_complexity 1 53 0 3069 166 11 23 chr15 17430034 17430391 -83950130 - Tigger3b DNA MER2_type -2463 565 216 2326 81 0 0 chr15 17430391 17430686 -83949835 - AluY SINE Alu -16 295 1 3069 166 11 23 chr15 17430686 17430900 -83949621 - Tigger3b DNA MER2_type -2812 216 1 919 242 83 91 chr15 17431998 17433301 -83947220 - HSREP522 Satellite telomeric 0 1291 1 213 65 0 0 chr15 17435116 17435147 -83945374 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 297 351 54 30 chr15 17435410 17435578 -83944943 + MIR SINE MIR 19 190 -72 377 257 68 24 chr15 17438997 17439203 -83941318 - LTR37B LTR ERV1 0 468 254 426 92 77 0 chr15 17439203 17439268 -83941253 + L1PA13 LINE L1 6088 6157 -6 235 211 0 18 chr15 17439316 17439373 -83941148 - LTR37B LTR ERV1 -221 247 192 4689 140 19 8 chr15 17439525 17440323 -83940198 - L1MA2 LINE L1 0 6304 5498 7540 164 24 3 chr15 17440449 17441885 -83938636 - L1MA2 LINE L1 -883 5263 3798 2154 132 3 23 chr15 17441885 17442271 -83938250 + L1MA2 LINE L1 5926 6304 0 2170 113 0 28 chr15 17442292 17442799 -83937722 + AluSq SINE Alu 1 313 0 419 167 11 0 chr15 17442817 17442907 -83937614 + GA-rich Low_complexity Low_complexity 2 92 0 7478 179 43 18 chr15 17442915 17444809 -83935712 + L1M2 LINE L1 3663 5620 -680 191 216 0 0 chr15 17444820 17444857 -83935664 + L2 LINE L2 3277 3313 0 822 322 77 53 chr15 17449351 17450083 -83930438 + ERVL LTR ERVL 3603 4351 -1413 2128 110 0 31 chr15 17451454 17451773 -83928748 - AluSg SINE Alu -1 309 1 1505 186 144 42 chr15 17452720 17453124 -83927397 + L1P LINE L1 3282 3726 -2420 2281 103 0 0 chr15 17453191 17453483 -83927038 + AluSc SINE Alu 1 292 -17 482 266 146 31 chr15 17459152 17459378 -83921143 - MIR SINE MIR 0 262 11 360 311 16 8 chr15 17459429 17459551 -83920970 + MIR SINE MIR 74 196 -66 309 265 183 27 chr15 17459634 17459809 -83920712 - MIR SINE MIR -40 222 30 189 0 0 0 chr15 17460558 17460579 -83919942 + (CAGAGA)n Simple_repeat Simple_repeat 4 24 0 3206 19 5 0 chr15 17460753 17461128 -83919393 - L1PA4 LINE L1 -3 6152 5776 4195 32 0 0 chr15 17461128 17461652 -83918869 + L1PA4 LINE L1 5275 5798 -357 363 257 41 76 chr15 17461977 17462148 -83918373 - MLT1J LTR MaLR -9 502 338 24 0 0 0 chr15 17462650 17462674 -83917847 + AT_rich Low_complexity Low_complexity 1 24 0 7083 25 6 0 chr15 17462732 17463951 -83916570 + L1PA3 LINE L1 4910 6135 -20 220 67 0 44 chr15 17463962 17464007 -83916514 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 238 271 99 55 chr15 17466489 17466666 -83913855 - MIR SINE MIR -67 195 16 317 225 79 22 chr15 17466835 17467013 -83913508 + L1ME4a LINE L1 5781 5968 -153 461 204 0 0 chr15 17467298 17467391 -83913130 + LTR55 LTR ERV 1 93 -455 671 252 33 0 chr15 17467418 17467632 -83912889 + LTR55 LTR ERV 235 455 -93 433 365 126 3 chr15 17468101 17468386 -83912135 - L3 LINE CR1 -159 1418 1099 2172 165 44 36 chr15 17469467 17469998 -83910523 - Ricksha DNA DNA -18 3228 2745 1104 167 33 12 chr15 17469998 17470238 -83910283 + L1MA5 LINE L1 6056 6300 0 2172 165 44 36 chr15 17470238 17470254 -83910267 - Ricksha DNA DNA -501 2745 2731 2481 123 69 5 chr15 17471665 17472073 -83908448 - MER57B LTR ERV1 0 434 1 5389 59 0 9 chr15 17472380 17473073 -83907448 - L1PA7 LINE L1 -1 6153 5467 3076 82 10 0 chr15 17473073 17473606 -83906915 + L1PA7 LINE L1 4936 5471 -701 326 190 17 0 chr15 17473606 17473664 -83906857 - MER5A DNA MER1_type -118 71 13 245 355 45 71 chr15 17473932 17474310 -83906211 - L2 LINE L2 0 3313 2946 237 343 56 9 chr15 17474304 17474412 -83906109 - L2 LINE L2 -579 2735 2623 * 886 151 11 11 chr15 17474444 17474623 -83905898 - Looper DNA T2_type -1376 182 4 320 156 52 0 chr15 17474765 17474842 -83905679 + L1MB5 LINE L1 6028 6108 -66 906 298 91 15 chr15 17475000 17475406 -83905115 + LTR16C LTR ERVL 38 474 -17 521 332 66 73 chr15 17475464 17476036 -83904485 - L2 LINE L2 -934 2380 1813 744 305 5 0 chr15 17476041 17476231 -83904290 + L2 LINE L2 2885 3075 -238 570 168 26 0 chr15 17476234 17476347 -83904174 + L1MA9 LINE L1 5993 6108 -204 971 219 0 0 chr15 17476348 17476553 -83903968 + MER2 DNA MER2_type 1 205 -140 374 222 14 0 chr15 17476587 17476659 -83903862 + MER2 DNA MER2_type 270 342 -3 949 118 67 20 chr15 17476663 17476858 -83903663 + L1MA7 LINE L1 6109 6312 0 288 317 78 39 chr15 17476869 17477099 -83903422 + L2 LINE L2 3075 3313 0 30 0 0 0 chr15 17477100 17477130 -83903391 + AT_rich Low_complexity Low_complexity 1 30 0 202 73 49 0 chr15 17478462 17478503 -83902018 + (TA)n Simple_repeat Simple_repeat 1 43 0 1628 159 3 73 chr15 17479460 17479774 -83900747 - AluJb SINE Alu -20 292 1 245 354 13 0 chr15 17479991 17480070 -83900451 + MER5A DNA MER1_type 110 189 0 1067 263 39 12 chr15 17480297 17480831 -83899690 + L1M3c LINE L1 2155 2977 -4519 586 246 114 55 chr15 17480832 17481508 -83899013 + L1M3c LINE L1 2843 3558 -4007 1057 214 0 0 chr15 17481522 17481732 -83898789 + MER2 DNA MER2_type 1 210 -135 4454 242 51 28 chr15 17481837 17483576 -83896945 + L1M3c LINE L1 3566 5344 -2221 2204 130 0 0 chr15 17483577 17483884 -83896637 + AluSc SINE Alu 1 307 -2 7916 185 24 7 chr15 17483888 17485415 -83895106 + L1M1 LINE L1 10 1561 -6004 403 337 96 11 chr15 17486091 17486269 -83894252 + MIR3 SINE MIR 2 194 -14 3206 36 0 3 chr15 17488884 17489270 -83891251 + L1PA5 LINE L1 5763 6147 -7 38 0 0 0 chr15 17489273 17489311 -83891210 + AT_rich Low_complexity Low_complexity 1 38 0 1610 164 25 31 chr15 17489546 17489899 -83890622 - L1MA7 LINE L1 0 6291 5941 2390 184 13 4 chr15 17489900 17490363 -83890158 + L1MA7 LINE L1 5436 5902 -389 357 293 88 61 chr15 17490562 17490847 -83889674 - LTR67 LTR ERVL -4 553 250 2257 82 10 10 chr15 17490847 17491153 -83889368 - AluY SINE Alu -5 306 1 357 293 88 61 chr15 17491153 17491308 -83889213 - LTR67 LTR ERVL -307 250 101 297 0 0 0 chr15 17491401 17491434 -83889087 + (CA)n Simple_repeat Simple_repeat 2 34 0 1020 167 44 4 chr15 17492690 17492917 -83887604 + MER33 DNA MER1_type 1 236 -88 831 256 90 50 chr15 17493213 17493514 -83887007 + L2 LINE L2 2995 3307 -6 184 228 51 51 chr15 17493563 17493642 -83886879 - L2 LINE L2 -71 3242 3164 3418 37 18 0 chr15 17495269 17495706 -83884815 - L1PA4 LINE L1 -135 6020 5576 218 304 196 0 chr15 17496832 17496924 -83883597 - L2 LINE L2 -5 3308 3199 194 290 87 0 chr15 17497900 17497969 -83882552 + MER5A DNA MER1_type 2 76 -113 2663 277 21 39 chr15 17497970 17499519 -83881002 + L1M3b LINE L1 3 1287 -4994 17996 33 9 0 chr15 17499520 17502484 -83878037 + L1PA3 LINE L1 3178 6155 0 470 293 54 0 chr15 17502485 17502652 -83877869 - MST-int LTR MaLR -314 1337 1162 272 291 12 23 chr15 17503789 17503875 -83876646 + GA-rich Low_complexity Low_complexity 6 90 0 1410 173 111 43 chr15 17504048 17504419 -83876102 - MSTD LTR MaLR 0 396 1 570 173 7 13 chr15 17504885 17505035 -83875486 + (TCCA)n Simple_repeat Simple_repeat 4 152 0 2319 102 0 0 chr15 17505206 17505510 -83875011 - AluSx SINE Alu -8 304 1 2270 102 16 0 chr15 17505987 17506290 -83874231 - AluY SINE Alu -3 308 1 247 319 132 0 chr15 17506475 17506566 -83873955 + L2 LINE L2 3168 3270 -2 23 0 0 0 chr15 17506606 17506629 -83873892 + AT_rich Low_complexity Low_complexity 1 23 0 2058 113 28 3 chr15 17506908 17507199 -83873322 - AluSx SINE Alu -14 298 1 2398 85 0 19 chr15 17507421 17507738 -83872783 - AluY SINE Alu 0 311 1 723 189 0 8 chr15 17507796 17507928 -83872593 - FLAM_C SINE Alu -2 131 1 264 214 36 12 chr15 17508463 17508547 -83871974 + (CAGAGA)n Simple_repeat Simple_repeat 5 90 0 2336 110 0 0 chr15 17509241 17509541 -83870980 + AluSx SINE Alu 1 300 -12 2094 109 7 14 chr15 17509838 17510122 -83870399 + AluJb SINE Alu 24 305 -7 1406 180 32 18 chr15 17510412 17510690 -83869831 + AluJo SINE Alu 1 282 -30 1055 39 0 0 chr15 17511026 17511154 -83869367 - L1PA4 LINE L1 -1 6154 6027 622 132 0 0 chr15 17511154 17511245 -83869276 + FLAM_C SINE Alu 33 123 -20 566 157 0 0 chr15 17511470 17511559 -83868962 + AluJ/FLAM SINE Alu 2 90 -222 1696 143 0 104 chr15 17513208 17513543 -83866978 - AluSx SINE Alu -11 301 2 21 36 0 0 chr15 17514448 17514476 -83866045 + AT_rich Low_complexity Low_complexity 1 28 0 404 253 10 10 chr15 17515562 17515661 -83864860 - MER94 DNA DNA -34 100 2 348 281 74 35 chr15 17518369 17518600 -83861921 + MIR SINE MIR 16 255 -7 23 33 0 0 chr15 17518876 17518906 -83861615 + AT_rich Low_complexity Low_complexity 1 30 0 1974 124 11 3 chr15 17519429 17519712 -83860809 - AluSq SINE Alu -20 293 9 2069 149 0 0 chr15 17522997 17523305 -83857216 - AluSx SINE Alu -4 308 1 2151 123 0 7 chr15 17523312 17523613 -83856908 - AluY SINE Alu -10 301 3 464 291 11 22 chr15 17523688 17523867 -83856654 + MIR SINE MIR 85 261 -1 1570 96 5 0 chr15 17523903 17524157 -83856364 - AluSg/x SINE Alu 0 335 81 2090 315 116 16 chr15 17524158 17525234 -83855287 - L1M4 LINE L1 -1281 4865 3682 * 5032 150 62 6 chr15 17525233 17526139 -83854382 - L1MA7 LINE L1 -1 6290 5334 3888 196 68 17 chr15 17526133 17527087 -83853434 + L1 LINE L1 4121 5123 -1023 * 461 273 80 45 chr15 17527087 17527647 -83852874 - L1M4 LINE L1 -2442 3704 3125 33 0 0 0 chr15 17527664 17527697 -83852824 + AT_rich Low_complexity Low_complexity 1 33 0 2653 11 0 0 chr15 17529065 17529347 -83851174 + AluY SINE Alu 1 282 -29 2208 102 0 49 chr15 17529781 17530105 -83850416 + AluSx SINE Alu 1 308 -4 332 257 203 51 chr15 17530106 17530421 -83850100 + L1MB7 LINE L1 5301 5663 -2145 240 35 0 0 chr15 17532146 17532175 -83848346 + (A)n Simple_repeat Simple_repeat 1 29 0 1474 226 58 0 chr15 17532815 17533143 -83847378 + MER7A DNA MER2_type 1 345 -1 195 42 0 0 chr15 17533213 17533237 -83847284 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 1562 236 63 5 chr15 17534241 17534668 -83845853 + L1MB7 LINE L1 5733 6184 0 21 0 0 0 chr15 17535074 17535095 -83845426 + AT_rich Low_complexity Low_complexity 1 21 0 1872 159 0 3 chr15 17535095 17535384 -83845137 - AluJo SINE Alu -24 288 1 275 236 114 24 chr15 17536021 17536144 -83844377 - MIR SINE MIR -57 205 72 243 297 11 22 chr15 17537252 17537343 -83843178 + (CA)n Simple_repeat Simple_repeat 1 90 0 24 0 0 0 chr15 17538665 17538689 -83841832 + GC_rich Low_complexity Low_complexity 1 24 0 299 224 7 48 chr15 17538689 17538879 -83841642 + G-rich Low_complexity Low_complexity 1 182 0 181 79 0 53 chr15 17539249 17539287 -83841234 + (CGG)n Simple_repeat Simple_repeat 2 37 0 406 236 57 0 chr15 17539743 17539866 -83840655 + MIR SINE MIR 25 154 -108 608 158 0 0 chr15 17540499 17540594 -83839927 + FLAM_A SINE Alu 16 110 -32 1866 163 10 0 chr15 17541014 17541303 -83839218 + AluJb SINE Alu 1 292 -20 303 187 99 22 chr15 17541427 17541518 -83839003 + MIR SINE MIR 50 147 -61 1079 205 157 40 chr15 17541693 17542068 -83838453 + MLT1C LTR MaLR 6 424 -43 305 303 20 79 chr15 17543858 17543945 -83836576 + MER5A DNA MER1_type 47 123 -66 1921 124 32 3 chr15 17543945 17544227 -83836294 - AluSx SINE Alu -22 290 1 305 303 20 79 chr15 17544227 17544291 -83836230 + MER5A DNA MER1_type 123 189 0 234 266 31 0 chr15 17544411 17544475 -83836046 - MIR SINE MIR -118 144 79 251 281 24 72 chr15 17544636 17544803 -83835718 - L1MC4 LINE L1 -1 8041 7883 356 93 59 42 chr15 17544950 17545068 -83835453 + (CA)n Simple_repeat Simple_repeat 1 120 0 462 142 40 28 chr15 17545131 17545307 -83835214 + (TG)n Simple_repeat Simple_repeat 1 178 0 385 133 66 18 chr15 17545362 17545528 -83834993 + (TG)n Simple_repeat Simple_repeat 2 175 0 180 259 19 0 chr15 17545968 17546022 -83834499 - MIR SINE MIR -124 84 30 302 220 128 0 chr15 17546201 17546310 -83834211 - MIR SINE MIR -80 182 60 2165 108 21 0 chr15 17546933 17547221 -83833300 - AluSx SINE Alu -18 294 1 1708 154 31 35 chr15 17547470 17547607 -83832914 - MLT1D LTR MaLR -9 496 360 2316 96 0 0 chr15 17547607 17547909 -83832612 - AluY SINE Alu -9 302 1 1708 154 31 35 chr15 17547909 17548089 -83832432 - MLT1D LTR MaLR -145 360 180 1649 122 4 4 chr15 17548093 17548330 -83832191 - AluJo SINE Alu 0 312 76 1019 98 7 14 chr15 17548331 17548474 -83832047 - THE1C LTR MaLR -233 142 1 4957 92 63 11 chr15 17548474 17549168 -83831353 - THE1C-int LTR MaLR 0 1580 851 821 122 0 0 chr15 17549168 17549283 -83831238 - AluSg/x SINE Alu -10 302 188 308 286 62 43 chr15 17549485 17549646 -83830875 - L1ME LINE L1 -4882 1660 1497 294 302 46 49 chr15 17549664 17549876 -83830645 - L1ME LINE L1 -5063 1571 1360 2291 99 10 0 chr15 17549876 17550178 -83830343 - AluSg SINE Alu -5 305 1 294 302 46 49 chr15 17550178 17550396 -83830125 - L1ME LINE L1 -5274 1360 1142 952 375 19 19 chr15 17551167 17551753 -83828768 + L1PA16 LINE L1 788 1373 -6201 332 296 10 10 chr15 17551894 17551992 -83828529 + L1PA16 LINE L1 2085 2182 -5399 11450 234 84 21 chr15 17552312 17556459 -83824062 + L1PA16 LINE L1 2271 6794 -810 1540 167 50 56 chr15 17556459 17556836 -83823685 - THE1C LTR MaLR 0 375 1 11450 234 84 21 chr15 17556836 17557697 -83822824 + L1PA16 LINE L1 6794 7599 -5 585 272 131 22 chr15 17558154 17558617 -83821904 - MLT1E1 LTR MaLR -1 653 5 277 267 58 97 chr15 17559207 17559589 -83820932 + HAL1 LINE L1 750 1116 -1391 421 264 138 54 chr15 17559650 17560040 -83820481 + HAL1b LINE L1 417 839 -509 308 306 37 96 chr15 17560209 17560480 -83820041 + HAL1b LINE L1 1051 1305 -43 1916 108 41 10 chr15 17560520 17560815 -83819706 - AluSx SINE Alu -8 304 1 745 144 17 0 chr15 17561938 17562056 -83818465 + FRAM SINE Alu 43 162 -14 219 296 120 28 chr15 17562058 17562166 -83818355 - MIR SINE MIR -55 207 90 38636 39 4 0 chr15 17562330 17567832 -83812689 + L1PA4 LINE L1 632 6152 -3 204 122 0 0 chr15 17568017 17568058 -83812463 + (T)n Simple_repeat Simple_repeat 1 41 0 4260 167 50 11 chr15 17568725 17569574 -83810947 + L1MC1 LINE L1 5452 6333 0 335 281 24 85 chr15 17570726 17570890 -83809631 + MIR3 SINE MIR 25 178 -30 336 340 21 14 chr15 17571081 17571225 -83809296 - MLT-int LTR MaLR -1209 526 382 344 187 42 69 chr15 17571426 17571561 -83808960 - MLT1H1 LTR MaLR -24 531 423 258 278 44 44 chr15 17571781 17571871 -83808650 - MLT1H LTR MaLR -346 203 114 1305 97 0 0 chr15 17572224 17572389 -83808132 - AluSc SINE Alu -13 296 132 2283 98 0 3 chr15 17572389 17572694 -83807827 - AluY SINE Alu -7 304 1 2680 13 16 0 chr15 17573796 17574111 -83806410 + L1PA2 LINE L1 5834 6153 -2 941 310 89 19 chr15 17574142 17574583 -83805938 + L1ME3A LINE L1 3281 3690 -2456 2571 135 14 36 chr15 17574583 17575027 -83805494 - Tigger2a DNA MER2_type 0 434 1 941 310 89 19 chr15 17575027 17575711 -83804810 + L1ME3A LINE L1 3690 4484 -1662 283 302 94 44 chr15 17575892 17576190 -83804331 + L1ME3A LINE L1 4901 5213 -933 * 287 295 53 54 chr15 17576185 17576459 -83804062 + L1P5 LINE L1 5270 5541 -615 3658 198 62 22 chr15 17576460 17577688 -83802833 + L1MB4 LINE L1 4903 6180 0 321 248 124 0 chr15 17577720 17577841 -83802680 + L1ME3A LINE L1 5561 5696 -474 451 290 83 5 chr15 17577861 17578078 -83802443 + L1ME3A LINE L1 5756 5989 -181 1677 184 31 0 chr15 17578766 17579054 -83801467 + AluJb SINE Alu 3 299 -13 3589 256 23 13 chr15 17579054 17580096 -83800425 - L1P LINE L1 -4028 2118 1067 3858 165 90 4 chr15 17580096 17580817 -83799704 + L1PA8 LINE L1 5390 6172 0 21 82 0 0 chr15 17580904 17580953 -83799568 + AT_rich Low_complexity Low_complexity 1 49 0 2025 138 0 10 chr15 17581117 17581408 -83799113 - AluSx SINE Alu -24 288 1 180 210 210 0 chr15 17581492 17581554 -83798967 + L3 LINE CR1 1355 1429 -148 244 331 61 14 chr15 17582695 17582843 -83797678 + MIR SINE MIR 51 205 -57 29 84 0 0 chr15 17583587 17583658 -83796863 + AT_rich Low_complexity Low_complexity 1 71 0 331 294 119 23 chr15 17585291 17585509 -83795012 + L1 LINE L1 2679 2917 -3229 2036 179 40 0 chr15 17585597 17585728 -83794793 + L1P LINE L1 4264 4388 -1758 333 0 0 0 chr15 17585728 17585765 -83794756 + (CA)n Simple_repeat Simple_repeat 1 37 0 2036 179 40 0 chr15 17585765 17586035 -83794486 + L1P LINE L1 4388 4681 -1465 * 5116 159 44 12 chr15 17586032 17586730 -83793791 + L1MA7 LINE L1 5064 5816 -475 225 0 0 0 chr15 17586730 17586755 -83793766 + (CA)n Simple_repeat Simple_repeat 2 26 0 5116 159 44 12 chr15 17586755 17587247 -83793274 + L1MA7 LINE L1 5816 6291 0 342 280 74 50 chr15 17587456 17588045 -83792476 + L1 LINE L1 4059 4665 -1481 1161 264 86 23 chr15 17588188 17589018 -83791503 + L1MDa LINE L1 2394 3283 -3257 1538 198 74 14 chr15 17589155 17589599 -83790922 + L1M4 LINE L1 4181 4651 -1495 193 195 0 0 chr15 17590219 17590260 -83790261 + MIR SINE MIR 172 212 -50 2794 163 0 25 chr15 17592103 17592613 -83787908 + LOR1a LTR ERV1 1 497 0 251 284 4 13 chr15 17592771 17592847 -83787674 - MIR SINE MIR -64 144 65 335 240 74 50 chr15 17593004 17593125 -83787396 - L2 LINE L2 -3 3310 3187 289 292 142 31 chr15 17593269 17593495 -83787026 - MIR SINE MIR 0 262 12 292 313 134 8 chr15 17593775 17593909 -83786612 - MIR SINE MIR -71 191 41 1574 214 70 62 chr15 17594071 17594135 -83786386 - MLT1D LTR MaLR 0 505 443 1846 101 79 8 chr15 17594135 17594402 -83786119 + AluSc SINE Alu 1 286 -23 1574 214 70 62 chr15 17594402 17594838 -83785683 - MLT1D LTR MaLR -62 443 1 238 279 63 13 chr15 17594852 17594931 -83785590 - L2 LINE L2 0 3313 3231 185 372 13 13 chr15 17594947 17595025 -83785496 - L2 LINE L2 -214 3058 2981 7175 44 5 0 chr15 17595277 17596428 -83784093 - L1PA3 LINE L1 -18 6137 4984 524 281 0 16 chr15 17598041 17598169 -83782352 + L2 LINE L2 3188 3313 0 229 85 0 43 chr15 17598752 17598799 -83781722 + (TC)n Simple_repeat Simple_repeat 2 46 0 207 0 0 0 chr15 17598799 17598822 -83781699 + (CA)n Simple_repeat Simple_repeat 1 23 0 270 193 59 30 chr15 17598836 17598971 -83781550 + (CA)n Simple_repeat Simple_repeat 1 139 0 378 0 0 0 chr15 17599007 17599049 -83781472 + (CA)n Simple_repeat Simple_repeat 1 42 0 2032 128 3 10 chr15 17599356 17599654 -83780867 + AluSx SINE Alu 5 300 -12 182 392 35 40 chr15 17599928 17600155 -83780366 - L2 LINE L2 -343 2971 2746 329 314 71 59 chr15 17600898 17601153 -83779368 + MIR SINE MIR 2 259 -3 1247 229 167 24 chr15 17601422 17601877 -83778644 + MLT2B1 LTR ERVL 1 520 0 2388 227 68 12 chr15 17602004 17602590 -83777931 - MER82 DNA MER2_type -1 652 34 6912 72 0 2 chr15 17603246 17604871 -83775650 - L1PA8 LINE L1 0 6172 4551 5959 58 1 4 chr15 17604871 17605644 -83774877 + L1P LINE L1 3651 4421 -1725 1027 288 45 49 chr15 17605723 17606192 -83774329 - HERV16 LTR ERVL -4336 660 194 339 254 61 26 chr15 17606231 17606345 -83774176 - HERV16 LTR ERVL -4794 202 85 1706 67 43 67 chr15 17606347 17606602 -83773919 - AluY SINE Alu -9 302 54 191 114 29 0 chr15 17606705 17606740 -83773781 + GA-rich Low_complexity Low_complexity 2 37 0 876 188 109 0 chr15 17608479 17608514 -83772007 + AluJb SINE Alu 88 118 -194 477 0 0 0 chr15 17608514 17608567 -83771954 + (CA)n Simple_repeat Simple_repeat 2 54 0 876 188 109 0 chr15 17608567 17608723 -83771798 + AluJb SINE Alu 118 300 -12 2286 93 0 3 chr15 17608723 17609034 -83771487 + AluSp SINE Alu 1 310 -3 262 238 131 0 chr15 17609620 17609704 -83770817 + L1MC5 LINE L1 7001 7095 -866 2138 105 0 3 chr15 17609749 17610045 -83770476 - AluSx SINE Alu -17 295 1 1386 185 57 4 chr15 17610047 17610328 -83770193 - AluJo SINE Alu -16 296 1 1871 126 3 30 chr15 17611347 17611649 -83768872 + AluSq SINE Alu 1 294 -19 1513 178 13 7 chr15 17611671 17611974 -83768547 + AluJb SINE Alu 6 310 -2 780 207 36 16 chr15 17612310 17612717 -83767804 + MLT1D LTR MaLR 5 458 -47 228 302 83 0 chr15 17612713 17612809 -83767712 + U13 snRNA snRNA 1 104 0 * 345 186 0 14 chr15 17612827 17612897 -83767624 + MLT1D LTR MaLR 430 498 -7 486 0 0 0 chr15 17614175 17614229 -83766292 + (CA)n Simple_repeat Simple_repeat 2 55 0 539 256 56 17 chr15 17616133 17616313 -83764208 + MER47A DNA MER2_type 1 187 -179 929 122 0 67 chr15 17616313 17616477 -83764044 + AluJo SINE Alu 1 153 -159 4411 224 57 46 chr15 17616580 17618006 -83762515 - L1MDa LINE L1 -2364 4176 2767 1995 110 28 7 chr15 17618006 17618297 -83762224 - AluSq SINE Alu -16 297 1 4411 224 57 46 chr15 17618297 17618730 -83761791 - L1MDa LINE L1 -3773 2767 2340 1617 161 83 9 chr15 17618730 17619066 -83761455 + MER46B DNA MER2_type 1 236 0 4411 224 57 46 chr15 17619066 17619875 -83760646 - L1MDa LINE L1 -4200 2340 1483 192 40 0 0 chr15 17619875 17619900 -83760621 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 390 134 0 0 chr15 17619922 17619989 -83760532 + (TCCCG)n Simple_repeat Simple_repeat 4 70 0 1729 149 4 0 chr15 17619991 17620266 -83760255 - AluSg SINE Alu -34 276 1 315 217 86 57 chr15 17621758 17621933 -83758588 - L1MC4a LINE L1 -1926 5882 5703 2245 94 0 3 chr15 17621935 17622244 -83758277 + AluSq SINE Alu 1 308 -5 936 61 0 0 chr15 17622613 17622727 -83757794 - AluY SINE Alu -197 114 1 530 295 70 44 chr15 17622730 17623184 -83757337 - L1MC5 LINE L1 -179 7782 7317 362 214 32 97 chr15 17623352 17623506 -83757015 - L1MC5 LINE L1 -861 7100 6957 514 231 35 35 chr15 17623560 17623763 -83756758 - L1M4 LINE L1 -3097 3049 2847 350 267 22 0 chr15 17623831 17623921 -83756600 - L1M4 LINE L1 -3327 2819 2728 1836 164 0 0 chr15 17626026 17626313 -83754208 + AluJb SINE Alu 1 287 -25 2167 96 7 0 chr15 17626322 17626614 -83753907 + AluSq SINE Alu 1 294 -19 244 367 61 0 chr15 17627050 17627148 -83753373 - L2 LINE L2 -1 3271 3168 2257 85 3 0 chr15 17630415 17630709 -83749812 - AluSc SINE Alu -14 295 1 2055 227 70 39 chr15 17631172 17631759 -83748762 - MER77 LTR ERV1 0 605 1 1032 254 53 22 chr15 17631913 17632236 -83748285 + MER58B DNA MER1_type 4 336 -5 22 0 0 0 chr15 17632406 17632428 -83748093 + AT_rich Low_complexity Low_complexity 1 22 0 3787 193 62 59 chr15 17634858 17635674 -83744847 - L1MB5 LINE L1 0 6174 5361 2262 103 0 0 chr15 17635674 17635985 -83744536 - AluSx SINE Alu -1 311 1 3787 193 62 59 chr15 17635985 17636878 -83743643 - L1MB5 LINE L1 -813 5361 4457 1519 206 69 43 chr15 17636883 17637024 -83743497 - L1MB5 LINE L1 -2486 3660 3524 2327 70 0 0 chr15 17637024 17637324 -83743197 - AluY SINE Alu -11 300 1 1519 206 69 43 chr15 17637324 17637567 -83742954 - L1MB5 LINE L1 -2622 3524 3256 2147 99 0 13 chr15 17637567 17637870 -83742651 - AluSc SINE Alu 0 309 11 1519 206 69 43 chr15 17637870 17638019 -83742502 - L1MB5 LINE L1 -2890 3256 3112 926 199 0 5 chr15 17638024 17638220 -83742301 - AluJb SINE Alu 0 312 118 1398 223 58 17 chr15 17638220 17638683 -83741838 - L1MB5 LINE L1 -3052 3094 2613 1514 151 0 44 chr15 17638816 17639087 -83741434 + AluJb SINE Alu 23 281 -31 213 139 0 0 chr15 17639102 17639145 -83741376 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 219 181 56 0 chr15 17639145 17639217 -83741304 + (TA)n Simple_repeat Simple_repeat 2 77 0 1907 266 47 46 chr15 17639223 17640192 -83740329 - HERVL68 LTR ERVL -1920 1117 60 2332 176 109 0 chr15 17640200 17640705 -83739816 - MER68 LTR ERV1 -2 560 1 314 257 121 36 chr15 17640707 17640847 -83739674 - L1ME LINE L1 -339 5782 5631 1508 172 80 43 chr15 17643886 17644298 -83736223 - MLT1C LTR MaLR 0 467 1 871 239 128 51 chr15 17644299 17644688 -83735833 - MLT1C LTR MaLR -46 421 3 343 315 6 0 chr15 17645515 17645680 -83734841 + (TG)n Simple_repeat Simple_repeat 1 166 0 790 142 0 0 chr15 17646157 17646277 -83734244 + FLAM_A SINE Alu 20 139 -3 2116 108 0 13 chr15 17647102 17647409 -83733112 + AluSg SINE Alu 1 303 -7 2140 86 7 13 chr15 17649047 17649351 -83731170 - AluSx SINE Alu -10 302 1 316 217 217 19 chr15 17649374 17649480 -83731041 - L1ME4a LINE L1 0 6121 5995 338 248 10 0 chr15 17651517 17651616 -83728905 + MER5A DNA MER1_type 10 98 -80 2282 87 0 0 chr15 17651850 17652150 -83728371 + AluY SINE Alu 3 302 -9 856 135 0 81 chr15 17652150 17652335 -83728186 + AluSg/x SINE Alu 132 301 -9 979 197 170 3 chr15 17652479 17652631 -83727890 + MER2 DNA MER2_type 2 127 -217 2433 77 0 0 chr15 17652631 17652942 -83727579 + AluY SINE Alu 1 311 0 979 197 170 3 chr15 17652942 17653083 -83727438 + MER2 DNA MER2_type 127 344 0 268 119 174 55 chr15 17653185 17653294 -83727227 + L1ME4a LINE L1 5999 6120 -1 935 178 40 0 chr15 17654338 17654512 -83726009 + MER58A DNA MER1_type 44 224 0 279 255 149 56 chr15 17655029 17655190 -83725331 - LTR16A LTR ERVL -93 357 182 528 157 88 0 chr15 17655271 17655373 -83725148 - MER20 DNA MER1_type -32 187 77 194 281 103 62 chr15 17655836 17655982 -83724539 + MIR SINE MIR 52 203 -59 204 163 23 0 chr15 17656006 17656049 -83724472 + (TA)n Simple_repeat Simple_repeat 1 44 0 198 358 70 30 chr15 17657046 17657187 -83723334 + MIR3 SINE MIR 14 158 -78 23 0 0 0 chr15 17657571 17657594 -83722927 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr15 17657807 17657828 -83722693 + AT_rich Low_complexity Low_complexity 1 21 0 245 300 43 0 chr15 17658198 17658268 -83722253 + L2 LINE L2 3198 3270 -2 53 30 0 0 chr15 17658805 17658872 -83721649 + AT_rich Low_complexity Low_complexity 1 67 0 1715 216 71 16 chr15 17659567 17659992 -83720529 - L1MB4 LINE L1 -2 6178 5731 1309 121 0 0 chr15 17659997 17660179 -83720342 - L1PA10 LINE L1 0 6168 5987 418 351 18 0 chr15 17660204 17660369 -83720152 + L2 LINE L2 1847 2014 -1300 6170 247 64 40 chr15 17661716 17663955 -83716566 - L1MD2 LINE L1 -18 6601 4234 2089 173 64 50 chr15 17663955 17664377 -83716144 - MSTA LTR MaLR 0 428 1 6170 247 64 40 chr15 17664377 17665989 -83714532 - L1MD2 LINE L1 -2385 4234 2661 440 123 27 0 chr15 17666335 17666408 -83714113 + MSTD LTR MaLR 322 396 0 550 251 18 54 chr15 17666408 17666575 -83713946 - L1MD2 LINE L1 -5861 548 388 1112 292 16 7 chr15 17666584 17666892 -83713629 - L1MD2 LINE L1 -6079 330 20 602 223 117 51 chr15 17669493 17669767 -83710754 + MLT1C LTR MaLR 3 294 -173 242 182 0 0 chr15 17669775 17669819 -83710702 + MLT1C LTR MaLR 445 488 -17 192 182 0 0 chr15 17670063 17670107 -83710414 + (TTCA)n Simple_repeat Simple_repeat 4 47 0 308 276 153 79 chr15 17671346 17671574 -83708947 + L1M2 LINE L1 816 1060 -5789 230 230 230 0 chr15 17671927 17672001 -83708520 - L2 LINE L2 -619 2695 2605 308 308 0 0 chr15 17672029 17672107 -83708414 - L2 LINE L2 0 3272 3195 837 52 0 63 chr15 17672399 17672590 -83707931 + (GCTG)n Simple_repeat Simple_repeat 2 180 0 839 56 0 66 chr15 17672621 17673000 -83707521 + (GCTG)n Simple_repeat Simple_repeat 2 533 0 576 71 0 82 chr15 17673035 17673219 -83707302 + (GCTG)n Simple_repeat Simple_repeat 2 170 0 303 292 96 90 chr15 17673220 17673363 -83707158 - L1M2 LINE L1 -5491 1358 1217 817 41 0 77 chr15 17673363 17673558 -83706963 + (GCTG)n Simple_repeat Simple_repeat 1 180 0 303 292 96 90 chr15 17673558 17673780 -83706741 - L1M2 LINE L1 -5632 1217 987 809 52 0 68 chr15 17673780 17673972 -83706549 + (GCTG)n Simple_repeat Simple_repeat 2 180 0 303 292 96 90 chr15 17673972 17674115 -83706406 - L1M2 LINE L1 -5862 987 846 * 312 246 88 107 chr15 17674088 17674442 -83706079 - L1M2 LINE L1 -5484 1365 1019 435 61 0 61 chr15 17674453 17674552 -83705969 + (GCTG)n Simple_repeat Simple_repeat 2 94 0 960 31 0 65 chr15 17674565 17674949 -83705572 + (GCTG)n Simple_repeat Simple_repeat 1 358 0 322 278 60 114 chr15 17674973 17675698 -83704823 - L1M2 LINE L1 -5497 1352 846 * 899 64 0 70 chr15 17675500 17675868 -83704653 + (GCTG)n Simple_repeat Simple_repeat 1 342 0 702 92 0 65 chr15 17675884 17676253 -83704268 + (GCTG)n Simple_repeat Simple_repeat 1 344 0 1225 121 23 0 chr15 17676253 17676426 -83704095 - AluSg/x SINE Alu -40 272 96 346 148 0 0 chr15 17676428 17676482 -83704039 + Alu SINE Alu 246 299 -3 367 276 4 15 chr15 17676494 17676760 -83703761 + (CA)n Simple_repeat Simple_repeat 1 262 0 327 25 0 0 chr15 17677963 17678003 -83702518 + (TTA)n Simple_repeat Simple_repeat 3 42 0 557 186 0 0 chr15 17678003 17678105 -83702416 - L1PA16 LINE L1 -25 6141 6040 2430 92 0 0 chr15 17678240 17678543 -83701978 + AluSx SINE Alu 1 303 -9 1365 183 2 10 chr15 17678648 17679086 -83701435 - L1PA16 LINE L1 -133 6033 5718 899 144 12 12 chr15 17679079 17679239 -83701282 - L1PA16 LINE L1 -245 5921 5762 * 1002 145 0 6 chr15 17679239 17679398 -83701123 - L1PA16 LINE L1 -247 5919 5762 925 152 6 6 chr15 17679399 17679557 -83700964 - L1PA16 LINE L1 -248 5918 5761 1531 161 15 68 chr15 17679558 17679790 -83700731 - L1PA16 LINE L1 -249 5917 5705 2069 113 7 0 chr15 17679790 17680072 -83700449 + AluSx SINE Alu 23 306 -6 1531 161 15 68 chr15 17680072 17680163 -83700358 - L1PA16 LINE L1 -461 5705 5611 1745 152 7 112 chr15 17680168 17680440 -83700081 - L1PA16 LINE L1 -22 6144 5930 3374 103 0 2 chr15 17680440 17680888 -83699633 + L1PA7 LINE L1 5708 6154 0 1745 152 7 112 chr15 17680888 17681035 -83699486 - L1PA16 LINE L1 -236 5930 5769 288 87 0 0 chr15 17681032 17681078 -83699443 + L1PA13 LINE L1 5989 6034 -129 * 2052 135 0 0 chr15 17681082 17681370 -83699151 + AluSx SINE Alu 1 288 -24 2000 95 23 56 chr15 17681865 17682005 -83698516 + AluSg SINE Alu 1 144 -166 2295 98 0 13 chr15 17682005 17682312 -83698209 + AluY SINE Alu 1 303 -8 2000 95 23 56 chr15 17682312 17682476 -83698045 + AluSg SINE Alu 144 295 -15 641 211 0 0 chr15 17682564 17682668 -83697853 + FLAM_C SINE Alu 2 105 -38 3141 264 33 6 chr15 17682669 17683488 -83697033 - ERVL LTR ERVL -3750 2014 1174 313 146 10 21 chr15 17683491 17683587 -83696934 + (CCAA)n Simple_repeat Simple_repeat 1 95 0 852 238 21 0 chr15 17683589 17683772 -83696749 - ERVL LTR ERVL -4575 1189 1002 222 37 0 0 chr15 17683772 17683799 -83696722 + (TG)n Simple_repeat Simple_repeat 2 28 0 4753 169 23 40 chr15 17683811 17684718 -83695803 - MER49 LTR ERV1 -2 921 30 337 182 0 0 chr15 17684818 17684884 -83695637 - MER72 LTR ERV1 -656 66 1 238 323 30 0 chr15 17684896 17684995 -83695526 - MLT2C1 LTR ERVL -59 338 237 334 244 25 59 chr15 17685012 17685131 -83695390 - MLT2C1 LTR ERVL -281 116 2 277 281 156 15 chr15 17685445 17685580 -83694941 - MIR SINE MIR -72 190 37 242 364 23 8 chr15 17686358 17686490 -83694031 + MIR SINE MIR 3 136 -126 440 227 100 0 chr15 17686847 17686957 -83693564 + MLT1D LTR MaLR 385 505 0 373 242 68 43 chr15 17688698 17688859 -83691662 + MIR3 SINE MIR 3 167 -41 2147 130 0 3 chr15 17689637 17689945 -83690576 + AluSq SINE Alu 1 307 -6 230 221 117 52 chr15 17690813 17690890 -83689631 - MER67D LTR ERV1 -303 211 130 * 904 257 15 20 chr15 17690870 17691196 -83689325 - MER34C LTR ERV1 -155 430 63 6674 34 4 0 chr15 17691934 17692672 -83687849 + L1PA5 LINE L1 5408 6148 -6 270 297 22 0 chr15 17693446 17693537 -83686984 - L2 LINE L2 -5 3308 3216 1849 161 10 26 chr15 17695564 17695875 -83684646 - AluSp SINE Alu -7 306 1 2072 140 0 0 chr15 17696247 17696540 -83683981 + AluSx SINE Alu 1 293 -19 208 314 0 0 chr15 17696710 17696780 -83683741 - MIR SINE MIR -8 254 185 3671 175 5 14 chr15 17697091 17697755 -83682766 - L1MA5 LINE L1 -1 6299 5642 1837 201 214 28 chr15 17697757 17698359 -83682162 + L1 LINE L1 3884 4597 -1549 28 29 0 0 chr15 17698997 17699032 -83681489 + AT_rich Low_complexity Low_complexity 1 35 0 200 158 105 0 chr15 17699085 17699161 -83681360 + (CATTT)n Simple_repeat Simple_repeat 5 88 0 561 123 81 6 chr15 17699182 17699497 -83681024 + (CATTT)n Simple_repeat Simple_repeat 1 338 0 43182 37 24 1 chr15 17699509 17705527 -83674994 - L1PA2 LINE L1 0 6155 3 561 106 66 31 chr15 17705539 17705770 -83674751 + (CATTT)n Simple_repeat Simple_repeat 1 239 0 878 110 36 17 chr15 17705774 17706060 -83674461 + (CATCT)n Simple_repeat Simple_repeat 1 291 0 768 101 65 8 chr15 17706084 17706477 -83674044 + (CATTT)n Simple_repeat Simple_repeat 1 415 0 198 121 103 0 chr15 17706489 17706547 -83673974 + (CATTT)n Simple_repeat Simple_repeat 5 68 0 560 135 47 29 chr15 17706585 17706755 -83673766 + (CATCT)n Simple_repeat Simple_repeat 5 177 0 * 649 78 56 56 chr15 17706728 17706908 -83673613 + (CATTT)n Simple_repeat Simple_repeat 1 180 0 638 112 87 0 chr15 17706915 17707076 -83673445 + (CATCT)n Simple_repeat Simple_repeat 5 179 0 578 97 91 12 chr15 17707075 17707240 -83673281 + (CATTT)n Simple_repeat Simple_repeat 1 178 0 * 283 136 68 0 chr15 17707244 17707303 -83673218 + (CATCT)n Simple_repeat Simple_repeat 5 67 0 531 97 103 7 chr15 17707303 17707458 -83673063 + (CATTT)n Simple_repeat Simple_repeat 5 174 0 844 98 61 0 chr15 17707474 17707637 -83672884 + (CATCT)n Simple_repeat Simple_repeat 5 177 0 553 113 94 12 chr15 17707658 17707818 -83672703 + (CATTT)n Simple_repeat Simple_repeat 2 174 0 600 97 73 24 chr15 17707829 17707994 -83672527 + (CATTT)n Simple_repeat Simple_repeat 5 177 0 218 87 43 72 chr15 17708040 17708109 -83672412 + (CATCT)n Simple_repeat Simple_repeat 1 67 0 36 33 0 16 chr15 17708233 17708257 -83672264 + AT_rich Low_complexity Low_complexity 1 24 -36 754 189 23 30 chr15 17708257 17708271 -83672250 - FLAM_C SINE Alu -171 131 118 1513 189 50 13 chr15 17708271 17708572 -83671949 - AluJo SINE Alu 0 312 1 198 0 0 0 chr15 17708572 17708594 -83671927 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 754 189 23 30 chr15 17708594 17708710 -83671811 - FLAM_C SINE Alu -182 120 1 36 33 0 16 chr15 17708710 17708746 -83671775 + AT_rich Low_complexity Low_complexity 24 60 0 330 280 46 29 chr15 17709136 17709367 -83671154 + (CTAGGG)n Simple_repeat Simple_repeat 1 234 0 261 141 0 78 chr15 17709284 17709475 -83671046 + (CAGGG)n Simple_repeat Simple_repeat 1 176 0 * 219 177 0 99 chr15 17709593 17709880 -83670641 + (CAGGG)n Simple_repeat Simple_repeat 1 258 0 340 171 0 55 chr15 17709907 17710071 -83670450 + (CAGGG)n Simple_repeat Simple_repeat 2 156 0 361 178 2 76 chr15 17710204 17710783 -83669738 + (CAGGG)n Simple_repeat Simple_repeat 1 535 0 205 141 0 90 chr15 17710790 17710868 -83669653 + (CCCTG)n Simple_repeat Simple_repeat 1 71 0 814 126 0 17 chr15 17710922 17711041 -83669480 - AluJb SINE Alu -179 133 17 365 223 32 11 chr15 17711043 17711137 -83669384 + MIR SINE MIR 92 187 -75 335 293 48 0 chr15 17711346 17711493 -83669028 + (CCCTAG)n Simple_repeat Simple_repeat 6 159 0 284 265 61 7 chr15 17711705 17711852 -83668669 + (CTAGGG)n Simple_repeat Simple_repeat 6 160 0 203 174 0 47 chr15 17711856 17711942 -83668579 + (CAGGG)n Simple_repeat Simple_repeat 5 86 0 444 275 47 0 chr15 17711953 17712124 -83668397 + (CTAGGG)n Simple_repeat Simple_repeat 2 180 0 296 293 51 9 chr15 17712137 17712439 -83668082 + (CTAGGG)n Simple_repeat Simple_repeat 1 314 0 431 250 34 23 chr15 17712501 17712677 -83667844 + (CTAGGG)n Simple_repeat Simple_repeat 1 178 0 244 152 0 79 chr15 17712678 17712842 -83667679 + (CAGGG)n Simple_repeat Simple_repeat 1 151 0 307 302 28 28 chr15 17712858 17713037 -83667484 + (CTAGGG)n Simple_repeat Simple_repeat 2 180 0 189 143 7 79 chr15 17713086 17713226 -83667295 + (CAGGG)n Simple_repeat Simple_repeat 2 131 0 473 259 46 9 chr15 17713329 17713667 -83666854 + (CTAGGG)n Simple_repeat Simple_repeat 1 350 0 203 130 0 22 chr15 17713685 17713731 -83666790 + (CAGGG)n Simple_repeat Simple_repeat 3 47 0 213 156 0 74 chr15 17713814 17713949 -83666572 + (CAGGG)n Simple_repeat Simple_repeat 1 125 0 415 260 48 0 chr15 17714005 17714151 -83666370 + (CTAGGG)n Simple_repeat Simple_repeat 2 154 0 359 286 48 0 chr15 17714270 17714438 -83666083 + (CTAGGG)n Simple_repeat Simple_repeat 2 177 0 209 238 16 76 chr15 17714389 17714574 -83665947 + (CAAGG)n Simple_repeat Simple_repeat 2 175 0 * 336 198 6 72 chr15 17714522 17714689 -83665832 + (CAGGG)n Simple_repeat Simple_repeat 1 156 0 236 183 0 59 chr15 17714768 17714937 -83665584 + (CAGGG)n Simple_repeat Simple_repeat 2 160 0 780 284 104 30 chr15 17715761 17716113 -83664408 - HSREP522 Satellite telomeric -171 377 1 3935 217 60 36 chr15 17716244 17717466 -83663055 + L1MB7 LINE L1 2785 4035 -2111 597 96 0 0 chr15 17717470 17717553 -83662968 + AluJb SINE Alu 208 290 -22 1026 152 0 24 chr15 17717584 17717748 -83662773 + AluJo SINE Alu 6 165 -147 2489 187 36 13 chr15 17717748 17718300 -83662221 + L1MB7 LINE L1 5599 6163 -21 22 35 0 0 chr15 17718486 17718515 -83662006 + AT_rich Low_complexity Low_complexity 1 29 0 618 197 0 47 chr15 17718515 17718642 -83661879 + FLAM_A SINE Alu 1 121 -12 2241 131 0 3 chr15 17718651 17718957 -83661564 + AluSx SINE Alu 1 305 -7 348 186 17 0 chr15 17718957 17719016 -83661505 - L1MC4 LINE L1 -1340 6702 6643 1643 162 45 17 chr15 17719163 17719453 -83661068 + AluSx SINE Alu 1 298 -14 2213 136 0 3 chr15 17719453 17719762 -83660759 + AluSx SINE Alu 1 308 -4 1424 181 33 49 chr15 17720014 17720318 -83660203 - AluJo SINE Alu -13 299 1 324 342 8 17 chr15 17720510 17720627 -83659894 - L2 LINE L2 0 3272 3157 186 118 0 0 chr15 17721184 17721218 -83659303 + (CA)n Simple_repeat Simple_repeat 2 35 0 2395 61 14 0 chr15 17722105 17722398 -83658123 - AluY SINE Alu -14 297 1 216 374 20 31 chr15 17722506 17722701 -83657820 + MIR SINE MIR 12 204 -58 2460 127 90 19 chr15 17722704 17723191 -83657330 - Tigger3(Golem) DNA MER2_type -3 3026 2505 2259 121 0 9 chr15 17723191 17723506 -83657015 + AluSq SINE Alu 2 313 0 505 321 24 6 chr15 17723865 17724033 -83656488 + MIR SINE MIR 13 183 -79 622 272 75 55 chr15 17724155 17724409 -83656112 + MER46C DNA MER2_type 80 338 0 2119 139 0 3 chr15 17724697 17724998 -83655523 + AluSx SINE Alu 1 300 -12 2001 163 0 0 chr15 17725682 17725977 -83654544 + AluSx SINE Alu 1 295 -17 189 0 0 0 chr15 17726023 17726044 -83654477 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1562 165 32 36 chr15 17727483 17727620 -83652901 + AluJo SINE Alu 1 137 -175 2227 130 3 0 chr15 17727620 17727921 -83652600 + AluSx SINE Alu 1 302 -10 1562 165 32 36 chr15 17727921 17728062 -83652459 + AluJo SINE Alu 137 278 -34 367 180 33 16 chr15 17728062 17728184 -83652337 + GA-rich Low_complexity Low_complexity 4 127 0 456 125 0 14 chr15 17728184 17728256 -83652265 + AluS SINE Alu 3 73 -239 2186 134 3 0 chr15 17728467 17728772 -83651749 + AluSq SINE Alu 1 306 -7 811 243 0 0 chr15 17728814 17728987 -83651534 + FRAM SINE Alu 1 167 -9 186 333 42 25 chr15 17729022 17729142 -83651379 - MIR SINE MIR -57 151 30 1793 169 55 19 chr15 17729986 17730348 -83650173 + THE1C LTR MaLR 1 375 0 1541 134 0 0 chr15 17730921 17731138 -83649383 + AluSg/x SINE Alu 87 303 -9 479 255 88 8 chr15 17732073 17732238 -83648283 - MIR SINE MIR -56 206 32 1858 142 4 4 chr15 17732630 17732904 -83647617 + AluJb SINE Alu 1 274 -38 399 255 172 14 chr15 17733456 17733601 -83646920 - MER5B DNA MER1_type -7 171 4 213 39 0 0 chr15 17733624 17733650 -83646871 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1605 142 3 20 chr15 17733659 17733954 -83646567 - TAR1 Satellite telomeric -297 1814 1525 377 321 129 47 chr15 17734337 17735003 -83645518 - L1MEd LINE L1 -5353 766 46 318 181 86 9 chr15 17735516 17735621 -83644900 + MIR3 SINE MIR 81 193 -15 1118 209 108 0 chr15 17736407 17736656 -83643865 + MER68 LTR ERV1 287 562 0 2805 251 74 48 chr15 17736658 17736789 -83643732 - L1 LINE L1 -1208 4938 4812 2238 92 0 74 chr15 17736789 17737115 -83643406 - AluY SINE Alu -9 302 1 2805 251 74 48 chr15 17737115 17737197 -83643324 - L1 LINE L1 -1334 4812 4734 2127 147 0 3 chr15 17737197 17737509 -83643012 - AluSq SINE Alu -2 311 1 2805 251 74 48 chr15 17737509 17737916 -83642605 - L1 LINE L1 -1412 4734 4339 1926 166 3 3 chr15 17737916 17738218 -83642303 + AluJb SINE Alu 1 302 -10 2805 251 74 48 chr15 17738218 17738760 -83641761 - L1 LINE L1 -1807 4339 3744 827 182 107 0 chr15 17738813 17738836 -83641685 - FRAM SINE Alu -139 173 154 255 31 0 0 chr15 17738836 17738868 -83641653 + (TA)n Simple_repeat Simple_repeat 2 33 0 186 103 0 0 chr15 17738867 17738896 -83641625 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 * 827 182 107 0 chr15 17738868 17739031 -83641490 - FRAM SINE Alu -158 154 1 27 49 0 0 chr15 17739046 17739087 -83641434 + AT_rich Low_complexity Low_complexity 1 41 0 2148 119 36 10 chr15 17739116 17739418 -83641103 - AluSx SINE Alu -2 310 1 2081 133 23 0 chr15 17740178 17740479 -83640042 + AluSx SINE Alu 1 308 -4 2050 130 0 14 chr15 17740966 17741258 -83639263 - AluSx SINE Alu -12 300 13 983 161 0 25 chr15 17741358 17741519 -83639002 + FRAM SINE Alu 3 159 -17 2596 74 0 0 chr15 17741522 17741833 -83638688 + AluY SINE Alu 1 311 0 2572 53 0 3 chr15 17742232 17742532 -83637989 + AluY SINE Alu 1 299 -12 2088 93 21 11 chr15 17742756 17743073 -83637448 - AluSq SINE Alu 0 320 1 1798 137 0 0 chr15 17743206 17743461 -83637060 - AluSq SINE Alu -1 312 58 1031 162 7 0 chr15 17743865 17744019 -83636502 + AluJo SINE Alu 84 238 -74 1805 159 50 0 chr15 17744052 17744329 -83636192 + AluJb SINE Alu 1 291 -21 234 0 0 0 chr15 17744606 17744632 -83635889 + (T)n Simple_repeat Simple_repeat 1 26 0 1726 121 9 0 chr15 17744801 17745032 -83635489 - AluSg/x SINE Alu -12 300 68 1949 123 0 0 chr15 17745302 17745563 -83634958 + AluSq SINE Alu 1 261 -52 28 71 0 0 chr15 17745564 17745620 -83634901 + AT_rich Low_complexity Low_complexity 1 56 0 27 49 0 0 chr15 17745676 17745717 -83634804 + AT_rich Low_complexity Low_complexity 1 41 0 520 112 0 82 chr15 17745733 17745831 -83634690 - L1MB3 LINE L1 -41 6142 6053 1849 178 0 7 chr15 17745847 17746145 -83634376 + AluJo SINE Alu 1 296 -16 624 176 8 16 chr15 17746170 17746295 -83634226 - FLAM_A SINE Alu -9 124 1 2055 194 18 41 chr15 17746296 17746785 -83633736 - L1MB3 LINE L1 -118 6065 5588 1898 148 65 0 chr15 17746812 17747102 -83633419 - AluSx SINE Alu -3 309 1 364 214 8 87 chr15 17748178 17748275 -83632246 - MER96B DNA MER1_type? -34 383 297 2221 124 10 0 chr15 17748275 17748582 -83631939 + AluSx SINE Alu 1 310 -2 364 214 8 87 chr15 17748582 17748610 -83631911 - MER96B DNA MER1_type? -120 297 268 282 29 0 0 chr15 17748611 17748646 -83631875 + (TTTAA)n Simple_repeat Simple_repeat 3 37 0 1502 157 19 38 chr15 17748655 17748916 -83631605 - AluJo SINE Alu -56 256 1 804 296 39 0 chr15 17748959 17749189 -83631332 + MIR SINE MIR 13 251 -11 203 322 34 62 chr15 17749211 17749357 -83631164 - L2 LINE L2 -114 3158 3017 2333 96 0 0 chr15 17749672 17749963 -83630558 + AluSg SINE Alu 3 293 -17 1850 152 4 11 chr15 17750013 17750290 -83630231 + AluJo SINE Alu 1 275 -37 286 106 43 0 chr15 17750291 17750338 -83630183 + Alu SINE Alu 247 295 -7 384 205 68 8 chr15 17751059 17751176 -83629345 + L2 LINE L2 2360 2483 -831 671 155 0 14 chr15 17751184 17751326 -83629195 + C-rich Low_complexity Low_complexity 1 140 0 710 120 4 58 chr15 17751444 17751711 -83628810 + (TCCCC)n Simple_repeat Simple_repeat 1 252 0 186 250 0 0 chr15 17751735 17751791 -83628730 + CT-rich Low_complexity Low_complexity 1 56 0 1681 178 16 16 chr15 17751823 17752132 -83628389 - AluJo SINE Alu -3 309 1 721 151 0 0 chr15 17752147 17752266 -83628255 - FLAM_C SINE Alu -19 124 6 305 236 146 0 chr15 17752270 17752380 -83628141 + L2 LINE L2 2468 2593 -721 480 214 43 0 chr15 17752406 17752523 -83627998 - MIR SINE MIR -65 197 76 617 253 205 44 chr15 17752555 17752836 -83627685 + L2 LINE L2 2709 2944 -369 2284 108 10 0 chr15 17752836 17753133 -83627388 + AluSx SINE Alu 1 300 -12 617 253 205 44 chr15 17753133 17753373 -83627148 + L2 LINE L2 2944 3308 -5 1499 224 0 10 chr15 17753424 17753737 -83626784 + AluJo SINE Alu 1 310 -2 2355 166 110 25 chr15 17753757 17754276 -83626245 - LTR6A LTR ERV1 0 564 2 1310 113 62 5 chr15 17754748 17754943 -83625578 - AluSg/x SINE Alu -15 295 90 2260 96 0 10 chr15 17755377 17755689 -83624832 - AluSg SINE Alu 0 310 1 2577 68 7 0 chr15 17756029 17756338 -83624183 - AluY SINE Alu 0 311 1 2267 119 3 3 chr15 17756386 17756698 -83623823 - AluSx SINE Alu 0 312 1 1818 146 26 42 chr15 17757658 17757966 -83622555 + AluSx SINE Alu 1 303 -9 1166 128 0 0 chr15 17758390 17758546 -83621975 + FRAM SINE Alu 11 166 -10 337 113 0 0 chr15 17759048 17759101 -83621420 - MADE1 DNA Mariner 0 80 28 2027 133 0 23 chr15 17759101 17759402 -83621119 + AluSx SINE Alu 1 294 -18 1096 136 28 11 chr15 17759402 17759578 -83620943 + AluSq SINE Alu 134 312 -1 1674 167 3 37 chr15 17760103 17760290 -83620231 - AluJb SINE Alu 0 312 139 2272 90 3 0 chr15 17760290 17760591 -83619930 - AluSp SINE Alu -11 302 1 1674 167 3 37 chr15 17760591 17760726 -83619795 - AluJb SINE Alu -173 139 1 2049 97 47 3 chr15 17760827 17761127 -83619394 - AluSq SINE Alu 0 313 1 687 171 0 17 chr15 17761423 17761540 -83618981 + FLAM_C SINE Alu 3 117 -16 1864 122 0 78 chr15 17761549 17761740 -83618781 - AluSx SINE Alu -10 302 144 2018 109 3 0 chr15 17761740 17762024 -83618497 - AluSg1 SINE Alu -24 285 1 1864 122 0 78 chr15 17762024 17762153 -83618368 - AluSx SINE Alu -168 144 7 756 158 0 43 chr15 17762178 17762317 -83618204 - FLAM_C SINE Alu 0 133 1 2069 117 17 0 chr15 17762499 17762789 -83617732 - AluSq SINE Alu -18 295 1 2091 128 0 0 chr15 17763177 17763489 -83617032 - AluSx SINE Alu 0 312 1 836 191 25 0 chr15 17763516 17763678 -83616843 + AluJb SINE Alu 137 302 -10 530 243 91 100 chr15 17763711 17763812 -83616709 - L1M4 LINE L1 -1665 5502 5402 1869 154 0 13 chr15 17763812 17764124 -83616397 - AluSx SINE Alu -4 308 1 530 243 91 100 chr15 17764124 17764351 -83616170 - L1M4 LINE L1 -1765 5402 5177 1152 165 5 9 chr15 17764516 17764728 -83615793 + AluJb SINE Alu 92 302 -10 513 177 0 0 chr15 17764913 17764992 -83615529 - AluJ/FLAM SINE Alu -221 91 13 1945 155 0 0 chr15 17765084 17765381 -83615140 + AluSq SINE Alu 5 301 -12 1155 145 199 12 chr15 17765387 17765628 -83614893 + AluSg1 SINE Alu 1 286 -23 993 80 0 15 chr15 17766034 17766171 -83614350 + AluSq/x SINE Alu 1 135 -178 2013 140 0 0 chr15 17766171 17766471 -83614050 + AluSx SINE Alu 1 300 -12 196 293 17 0 chr15 17766497 17766555 -83613966 - MIR3 SINE MIR -135 73 15 713 205 8 0 chr15 17767301 17767423 -83613098 - FLAM_A SINE Alu -10 123 1 307 73 24 0 chr15 17767482 17767523 -83612998 - 5S rRNA rRNA -79 42 1 1680 177 0 10 chr15 17767569 17767868 -83612653 + AluJb SINE Alu 3 298 -14 2093 118 0 3 chr15 17767868 17768164 -83612357 + AluSg SINE Alu 1 295 -15 2053 102 40 7 chr15 17768468 17768771 -83611750 + AluSq SINE Alu 1 313 0 1670 169 3 13 chr15 17768785 17769093 -83611428 + AluJo SINE Alu 1 305 -7 492 262 16 27 chr15 17769205 17769293 -83611228 - L1M4 LINE L1 -2383 4784 4697 396 0 0 0 chr15 17769293 17769337 -83611184 + (TG)n Simple_repeat Simple_repeat 2 45 0 492 262 16 27 chr15 17769337 17769431 -83611090 - L1M4 LINE L1 -2470 4697 4604 2231 218 15 17 chr15 17769473 17769941 -83610580 - L1M4 LINE L1 -5941 1227 761 1169 206 86 86 chr15 17770003 17770435 -83610086 + MSTB1 LTR MaLR 1 432 0 1347 221 246 10 chr15 17770444 17770927 -83609594 - L1M4 LINE L1 -6571 597 1 649 269 187 26 chr15 17771050 17771440 -83609081 - L1ME3A LINE L1 -1 6169 5717 314 198 0 74 chr15 17771610 17771691 -83608830 - L1ME3A LINE L1 -2241 5544 5470 379 303 61 6 chr15 17771712 17771877 -83608644 - L1MEd LINE L1 -5943 176 3 1351 95 37 0 chr15 17772194 17772384 -83608137 + AluY SINE Alu 106 302 -9 2175 103 3 0 chr15 17772592 17772882 -83607639 + AluSx SINE Alu 1 291 -21 1155 193 82 4 chr15 17773098 17773368 -83607153 - L1ME3A LINE L1 -769 5377 5087 309 266 16 57 chr15 17773819 17773943 -83606578 + Charlie1 DNA MER1_type 1 119 -2642 432 195 57 24 chr15 17774053 17774176 -83606345 + Charlie1 DNA MER1_type 2523 2649 -112 275 294 84 0 chr15 17774206 17774325 -83606196 - L1MA9 LINE L1 -5 6307 6179 979 161 134 28 chr15 17774886 17775140 -83605381 + AluJo SINE Alu 1 281 -31 857 199 61 30 chr15 17775151 17775259 -83605262 - Charlie5 DNA MER1_type -119 2505 2402 2179 105 0 7 chr15 17775259 17775565 -83604956 - AluSq SINE Alu -9 304 1 857 199 61 30 chr15 17775565 17775687 -83604834 - Charlie5 DNA MER1_type -222 2402 2268 477 164 103 0 chr15 17775706 17775822 -83604699 - MER3 DNA MER1_type -41 168 41 232 278 142 57 chr15 17775825 17776294 -83604227 - L2 LINE L2 -208 3064 2554 193 312 18 46 chr15 17776365 17776474 -83604047 - L2 LINE L2 -987 2327 2222 735 107 116 16 chr15 17776554 17776675 -83603846 - FLAM_C SINE Alu 0 133 1 499 280 63 7 chr15 17776935 17777078 -83603443 + MIR SINE MIR 42 192 -70 4958 128 85 15 chr15 17777082 17777141 -83603380 - Tigger2 DNA MER2_type 0 2718 2665 2120 106 14 0 chr15 17777141 17777433 -83603088 + AluSg SINE Alu 1 296 -14 4958 128 85 15 chr15 17777433 17778219 -83602302 - Tigger2 DNA MER2_type -53 2665 1814 1587 185 58 48 chr15 17778196 17778552 -83601969 + MER49 LTR ERV1 515 866 -57 * 1879 148 0 16 chr15 17778552 17778857 -83601664 + AluSx SINE Alu 6 305 -7 1478 162 8 15 chr15 17778867 17779126 -83601395 + AluJo SINE Alu 1 257 -55 1587 185 58 48 chr15 17779126 17779153 -83601368 + MER49 LTR ERV1 874 913 -10 672 125 0 0 chr15 17779179 17779283 -83601238 - Tigger2 DNA MER2_type -1742 976 873 786 204 40 28 chr15 17779298 17779474 -83601047 - AluJb SINE Alu -1 311 134 4316 126 64 29 chr15 17779474 17780239 -83600282 - Tigger2 DNA MER2_type -1833 885 94 505 175 0 0 chr15 17780252 17780332 -83600189 - AluJ/FLAM SINE Alu -229 83 4 445 158 13 0 chr15 17780335 17780411 -83600110 - Tigger2 DNA MER2_type -1831 887 811 721 161 0 9 chr15 17780465 17780577 -83599944 + FLAM_C SINE Alu 3 113 -30 1972 125 0 29 chr15 17780582 17780893 -83599628 - AluSc SINE Alu -7 302 1 363 181 0 42 chr15 17780935 17781007 -83599514 - Tigger2 DNA MER2_type -2649 69 1 957 236 71 13 chr15 17781148 17781968 -83598553 - L1ME1 LINE L1 -142 6024 5032 2983 167 70 2 chr15 17781997 17782541 -83597980 - ERVL LTR ERVL -357 5407 4827 803 142 0 0 chr15 17782541 17782654 -83597867 - AluSq/x SINE Alu -199 114 2 8338 247 61 32 chr15 17782677 17785102 -83595419 - L1MC/D LINE L1 -743 5797 3445 1658 153 28 17 chr15 17785102 17785390 -83595131 - AluJb SINE Alu -21 291 1 8338 247 61 32 chr15 17785390 17786052 -83594469 - L1MC/D LINE L1 -3095 3445 2687 2778 13 0 0 chr15 17786052 17786363 -83594158 - AluY SINE Alu 0 311 1 8338 247 61 32 chr15 17786363 17786485 -83594036 - L1MC/D LINE L1 -3853 2687 2570 1026 256 120 50 chr15 17786560 17787075 -83593446 - MER77 LTR ERV1 -1 604 54 3114 245 94 17 chr15 17787106 17788342 -83592179 - L1MDb LINE L1 -4012 2528 1106 1491 180 3 49 chr15 17788342 17788669 -83591852 - AluJo SINE Alu 0 312 1 3114 245 94 17 chr15 17788669 17788946 -83591575 - L1MDb LINE L1 -5434 1106 852 731 276 62 23 chr15 17789117 17789374 -83591147 - L1MDb LINE L1 -6212 328 62 476 317 100 42 chr15 17790521 17790830 -83589691 + HAL1 LINE L1 1246 1572 -935 873 127 8 0 chr15 17791165 17791299 -83589222 + AluSq/x SINE Alu 1 135 -177 2035 118 0 0 chr15 17791299 17791595 -83588926 + AluSx SINE Alu 1 296 -16 700 184 45 11 chr15 17791739 17791924 -83588597 - L1M3 LINE L1 -661 5510 5288 182 216 0 0 chr15 17792003 17792040 -83588481 + L2 LINE L2 3261 3297 -16 749 260 27 14 chr15 17794152 17794379 -83586142 + LTR33 LTR ERVL 35 252 -271 348 288 15 15 chr15 17794431 17794563 -83585958 + LTR33 LTR ERVL 382 513 -8 259 247 55 0 chr15 17795106 17795179 -83585342 - MIR3 SINE MIR -5 203 127 1986 150 3 35 chr15 17796235 17796423 -83584098 + L1M3 LINE L1 5442 5616 -555 2380 108 93 18 chr15 17796423 17796821 -83583700 + MSTA LTR MaLR 1 428 0 1986 150 3 35 chr15 17796821 17796978 -83583543 + L1M3 LINE L1 5616 5776 -395 371 286 86 36 chr15 17798364 17798504 -83582017 + L2 LINE L2 3166 3312 -1 243 359 60 0 chr15 17798511 17798628 -83581893 + MIR SINE MIR 34 157 -105 258 32 0 0 chr15 17798665 17798696 -83581825 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 261 98 0 0 chr15 17798695 17798736 -83581785 + (TA)n Simple_repeat Simple_repeat 2 42 0 183 352 93 19 chr15 17798751 17798859 -83581662 + L2 LINE L2 3095 3210 -62 15093 80 10 1 chr15 17800960 17803745 -83576776 - L1PA7 LINE L1 -4 6150 3338 15726 116 13 22 chr15 17803853 17806323 -83574198 - L1PA7 LINE L1 -3076 3070 625 841 271 127 16 chr15 17806868 17807288 -83573233 + L2 LINE L2 2530 3052 -261 224 167 0 0 chr15 17807391 17807433 -83573088 + L2 LINE L2 3231 3272 0 25 0 0 0 chr15 17807707 17807732 -83572789 + AT_rich Low_complexity Low_complexity 1 25 0 1687 243 92 27 chr15 17807827 17808308 -83572213 + LTR33 LTR ERVL 4 515 -6 2152 105 7 0 chr15 17808314 17808610 -83571911 - AluSg SINE Alu -12 298 1 8048 60 6 91 chr15 17809224 17810485 -83570036 - SVA Other Other -7 1379 226 290 302 78 8 chr15 17810790 17810919 -83569602 + MIR SINE MIR 51 188 -74 1916 178 79 5 chr15 17810929 17811323 -83569198 + L1MC2 LINE L1 5917 6339 -5 30 45 0 0 chr15 17811345 17811389 -83569132 + AT_rich Low_complexity Low_complexity 1 44 0 475 294 20 7 chr15 17812342 17812495 -83568026 - MER103 DNA DNA 0 166 12 2317 112 3 0 chr15 17812579 17812882 -83567639 + AluSx SINE Alu 1 304 -8 28 0 0 0 chr15 17813013 17813041 -83567480 + AT_rich Low_complexity Low_complexity 1 28 0 375 0 0 0 chr15 17813319 17813362 -83567159 - MADE1 DNA Mariner 0 80 38 333 23 23 0 chr15 17814166 17814209 -83566312 + MADE1 DNA Mariner 37 80 0 380 313 37 82 chr15 17814302 17814494 -83566027 + MIR SINE MIR 6 184 -78 1590 167 36 4 chr15 17814494 17814617 -83565904 + AluJb SINE Alu 1 119 -193 360 0 0 0 chr15 17814617 17814657 -83565864 + (CA)n Simple_repeat Simple_repeat 2 41 0 1590 167 36 4 chr15 17814657 17814809 -83565712 + AluJb SINE Alu 119 285 -27 380 313 37 82 chr15 17814809 17814884 -83565637 + MIR SINE MIR 184 261 -1 200 307 157 30 chr15 17817380 17817839 -83562682 + L2 LINE L2 2118 2634 -680 863 186 56 0 chr15 17818088 17818249 -83562272 - FAM SINE Alu -5 170 1 347 319 50 0 chr15 17818251 17818370 -83562151 + L2 LINE L2 3125 3249 -23 219 36 0 0 chr15 17818903 17818931 -83561590 + (A)n Simple_repeat Simple_repeat 1 28 0 1848 176 38 61 chr15 17818992 17819469 -83561052 - MLT1C LTR MaLR -1 466 1 811 189 34 34 chr15 17820132 17820307 -83560214 + FAM SINE Alu 1 175 0 22 35 0 0 chr15 17820307 17820336 -83560185 + AT_rich Low_complexity Low_complexity 1 29 0 1744 172 40 3 chr15 17820378 17820675 -83559846 + AluJo SINE Alu 1 308 -4 541 194 191 53 chr15 17820798 17820998 -83559523 - L1ME4a LINE L1 -4 6117 5946 1834 141 27 13 chr15 17820998 17821296 -83559225 - AluJb SINE Alu -10 302 1 541 194 191 53 chr15 17821296 17821450 -83559071 - L1ME4a LINE L1 -175 5946 5714 361 203 0 0 chr15 17821700 17821769 -83558752 + AluJ/FLAM SINE Alu 1 69 -233 231 186 0 0 chr15 17821807 17821850 -83558671 + G-rich Low_complexity Low_complexity 5 47 0 834 175 111 11 chr15 17821853 17822042 -83558479 + MER50 LTR ERV1 33 240 -494 * 1855 126 11 7 chr15 17822025 17822303 -83558218 + MER50 LTR ERV1 433 711 -23 292 254 0 0 chr15 17822307 17822362 -83558159 + FLAM SINE Alu 71 125 -8 186 328 107 8 chr15 17822619 17822750 -83557771 + MIR SINE MIR 3 146 -116 188 287 210 19 chr15 17822782 17822939 -83557582 - MIR SINE MIR -54 208 22 928 193 49 34 chr15 17823087 17823352 -83557169 - MER96B DNA MER1_type? 0 417 149 2296 72 31 7 chr15 17823383 17823676 -83556845 + AluY SINE Alu 1 300 -11 21 0 0 0 chr15 17823795 17823816 -83556705 + AT_rich Low_complexity Low_complexity 1 21 0 2119 88 56 7 chr15 17823871 17824155 -83556366 - AluSq SINE Alu -15 298 1 2188 120 7 0 chr15 17825353 17825661 -83554860 + AluSg SINE Alu 1 310 0 2294 104 0 0 chr15 17825721 17826019 -83554502 + AluSc SINE Alu 1 298 -11 662 137 24 0 chr15 17826068 17826192 -83554329 + L1MB3 LINE L1 6041 6167 -16 21 36 0 0 chr15 17826236 17826264 -83554257 + AT_rich Low_complexity Low_complexity 1 28 0 2144 118 10 7 chr15 17826429 17826726 -83553795 - AluSx SINE Alu -14 298 1 1407 202 65 110 chr15 17826739 17827250 -83553271 + MER20B DNA MER1_type 64 551 -232 21 0 0 0 chr15 17827250 17827271 -83553250 + AT_rich Low_complexity Low_complexity 1 21 0 2396 88 0 0 chr15 17828116 17828410 -83552111 + AluSg1 SINE Alu 2 295 -14 466 248 61 43 chr15 17828524 17828688 -83551833 + L1ME4a LINE L1 5696 5876 -245 1963 159 10 0 chr15 17828688 17828990 -83551531 + AluJb SINE Alu 2 306 -6 466 248 61 43 chr15 17828990 17829117 -83551404 + L1ME4a LINE L1 5876 5999 -122 268 338 81 5 chr15 17829560 17829917 -83550604 + L2 LINE L2 2593 2981 -291 2866 69 11 16 chr15 17829919 17830296 -83550225 + THE1C LTR MaLR 1 375 0 359 326 62 17 chr15 17830443 17830621 -83549900 + MIR SINE MIR 25 210 -52 238 274 20 78 chr15 17830749 17830851 -83549670 + L2 LINE L2 2992 3087 -185 312 299 47 19 chr15 17831082 17831189 -83549332 + L2 LINE L2 3163 3272 0 487 287 91 35 chr15 17831800 17832237 -83548284 + LTR33 LTR ERVL 23 521 0 655 221 23 0 chr15 17832265 17832396 -83548125 + MER94 DNA DNA 1 134 0 2047 134 7 0 chr15 17834831 17835122 -83545399 + AluSx SINE Alu 1 293 -19 731 161 0 0 chr15 17835197 17835315 -83545206 - FLAM_A SINE Alu -15 127 10 468 86 0 0 chr15 17835342 17835412 -83545109 - Alu SINE Alu 0 312 243 1386 82 66 6 chr15 17835524 17835706 -83544815 - AluY SINE Alu -118 193 1 928 156 0 19 chr15 17835841 17835995 -83544526 + AluJb SINE Alu 140 290 -22 225 154 77 0 chr15 17836003 17836068 -83544453 + GA-rich Low_complexity Low_complexity 1 70 0 466 60 0 0 chr15 17836248 17836315 -83544206 - Alu SINE Alu 0 310 244 754 147 16 0 chr15 17836315 17836444 -83544077 - L1MB3 LINE L1 -41 6142 6012 2035 141 3 0 chr15 17836679 17836993 -83543528 + AluSx SINE Alu 1 315 0 316 296 44 0 chr15 17837533 17837649 -83542872 - MIR SINE MIR -53 155 34 38 39 0 0 chr15 17837820 17837872 -83542649 + AT_rich Low_complexity Low_complexity 1 52 0 2092 141 0 3 chr15 17837878 17838177 -83542344 + AluSq SINE Alu 1 298 -15 612 246 0 0 chr15 17838179 17838301 -83542220 + FLAM_A SINE Alu 1 122 -11 979 188 11 11 chr15 17838335 17838516 -83542005 + AluJo SINE Alu 1 181 -131 1403 117 117 0 chr15 17838517 17838730 -83541791 - AluSx SINE Alu -15 297 60 710 182 0 0 chr15 17838736 17838857 -83541664 + AluJo SINE Alu 190 310 -2 1453 191 57 7 chr15 17838875 17839158 -83541363 + AluJb SINE Alu 1 297 -15 2009 157 0 0 chr15 17839159 17839453 -83541068 - AluSx SINE Alu -18 294 1 2506 68 0 0 chr15 17839461 17839754 -83540767 - AluY SINE Alu -18 293 1 21 0 0 0 chr15 17839761 17839782 -83540739 + AT_rich Low_complexity Low_complexity 1 21 0 284 321 28 0 chr15 17839909 17840018 -83540503 - MIR SINE MIR -139 123 12 2074 126 11 0 chr15 17840338 17840624 -83539897 + AluSg SINE Alu 4 292 -18 1026 116 60 101 chr15 17840626 17840687 -83539834 - L1MB7 LINE L1 -16 6168 6106 1985 127 0 17 chr15 17840687 17840986 -83539535 - AluJo SINE Alu -13 299 6 1026 116 60 101 chr15 17840986 17841192 -83539329 - L1MB7 LINE L1 -78 6106 5912 409 304 192 14 chr15 17841196 17841680 -83538841 + L2 LINE L2 1823 2392 -922 306 166 59 27 chr15 17841686 17841793 -83538728 + AluJ/FLAM SINE Alu 2 86 -216 887 192 11 6 chr15 17841976 17842153 -83538368 + FRAM SINE Alu 1 173 -3 272 297 60 22 chr15 17842202 17842387 -83538134 + L2 LINE L2 2434 2625 -689 379 338 163 12 chr15 17842492 17842915 -83537606 + L2 LINE L2 2827 3313 0 1844 145 28 3 chr15 17843026 17843308 -83537213 - AluSx SINE Alu -23 289 1 1612 168 0 67 chr15 17843588 17843722 -83536799 + AluJo SINE Alu 1 142 -170 2470 83 0 0 chr15 17843722 17844024 -83536497 + AluY SINE Alu 1 302 -9 1612 168 0 67 chr15 17844024 17844204 -83536317 + AluJo SINE Alu 142 294 -18 1559 142 4 0 chr15 17844657 17844882 -83535639 + AluSq SINE Alu 35 260 -53 1714 131 0 46 chr15 17844910 17845046 -83535475 + AluSx SINE Alu 1 121 -191 2176 110 0 10 chr15 17845046 17845347 -83535174 + AluSg SINE Alu 1 298 -12 1714 131 0 46 chr15 17845347 17845470 -83535051 + AluSx SINE Alu 121 248 -64 2103 118 45 0 chr15 17846065 17846353 -83534168 - AluSx SINE Alu -11 301 1 1747 155 7 20 chr15 17846404 17846701 -83533820 + AluJo SINE Alu 17 309 -3 1837 170 7 0 chr15 17846706 17846995 -83533526 + AluJo SINE Alu 1 291 -21 23 0 0 0 chr15 17846995 17847018 -83533503 + AT_rich Low_complexity Low_complexity 1 23 0 2161 131 3 0 chr15 17847061 17847366 -83533155 + AluSx SINE Alu 1 306 -6 1663 160 25 110 chr15 17847382 17847781 -83532740 + MLT1A1 LTR MaLR 1 365 0 1985 124 4 4 chr15 17847981 17848256 -83532265 + AluSg SINE Alu 1 275 -35 1917 116 40 4 chr15 17848549 17848847 -83531674 + AluSq SINE Alu 1 308 0 1193 144 5 21 chr15 17848957 17849145 -83531376 - AluJb SINE Alu -26 286 102 331 276 74 37 chr15 17899252 17899415 -83481106 - L1M4 LINE L1 -938 5208 5040 27 49 0 0 chr15 17899415 17899456 -83481065 + AT_rich Low_complexity Low_complexity 1 41 0 450 264 60 53 chr15 17899657 17899941 -83480580 - L1M4 LINE L1 -1091 5055 4770 21 95 0 0 chr15 17900087 17900150 -83480371 + AT_rich Low_complexity Low_complexity 1 63 0 967 114 29 105 chr15 17900297 17900404 -83480117 + L1PA16 LINE L1 5932 6017 -149 1702 173 0 3 chr15 17900404 17900693 -83479828 + AluJb SINE Alu 1 288 -24 967 114 29 105 chr15 17900693 17900795 -83479726 + L1PA16 LINE L1 6017 6125 -41 917 213 0 0 chr15 17900951 17901151 -83479370 + AluSg/x SINE Alu 116 315 0 1182 134 18 0 chr15 17901386 17901557 -83478964 + AluSq SINE Alu 1 174 -139 1822 178 0 7 chr15 17901940 17902238 -83478283 - AluJo SINE Alu -16 296 1 2294 155 62 56 chr15 17902299 17902801 -83477720 + LTR9 LTR ERV1 1 505 -107 236 71 71 0 chr15 17902808 17902864 -83477657 + CT-rich Low_complexity Low_complexity 2 61 0 200 156 44 0 chr15 17904747 17904792 -83475729 + (CA)n Simple_repeat Simple_repeat 2 48 0 1974 148 10 7 chr15 17905144 17905442 -83475079 + AluSx SINE Alu 1 299 -13 388 175 92 25 chr15 17905448 17905568 -83474953 - L1ME4a LINE L1 -2 6119 5992 186 103 0 0 chr15 17905904 17905933 -83474588 + (CATA)n Simple_repeat Simple_repeat 2 30 0 4460 26 4 4 chr15 17905991 17906521 -83474000 - L1PA4 LINE L1 -10 6145 5616 2987 30 0 0 chr15 17906521 17906994 -83473527 + L1PA4 LINE L1 5137 5609 -546 290 345 73 9 chr15 17907197 17907307 -83473214 - L2 LINE L2 -3 3269 3153 2258 95 0 3 chr15 17907516 17907820 -83472701 - AluY SINE Alu -8 303 1 26 0 0 0 chr15 17910193 17910219 -83470302 + AT_rich Low_complexity Low_complexity 1 26 0 217 226 113 47 chr15 17910549 17910655 -83469866 + MIR SINE MIR 100 212 -50 338 310 129 19 chr15 17910870 17911025 -83469496 + MIR3 SINE MIR 13 184 -24 243 0 0 0 chr15 17911545 17911572 -83468949 + (T)n Simple_repeat Simple_repeat 1 27 0 2274 117 0 0 chr15 17911874 17912182 -83468339 + AluSq SINE Alu 1 308 -5 548 14 14 0 chr15 17912937 17913006 -83467515 + (TA)n Simple_repeat Simple_repeat 1 70 0 22 56 0 0 chr15 17913851 17913887 -83466634 + AT_rich Low_complexity Low_complexity 1 36 0 492 171 12 0 chr15 17913887 17913969 -83466552 + AluJ/FLAM SINE Alu 1 83 -229 1339 176 68 0 chr15 17914069 17914319 -83466202 + AluJo SINE Alu 38 304 -8 288 307 0 0 chr15 17914510 17914598 -83465923 + MIR SINE MIR 175 262 0 2161 112 0 10 chr15 17914679 17914983 -83465538 - AluY SINE Alu -10 301 1 286 260 57 24 chr15 17915020 17915143 -83465378 - L1ME4a LINE L1 -51 6070 5944 1969 119 3 31 chr15 17915310 17915596 -83464925 + AluSq SINE Alu 5 282 -31 180 0 0 0 chr15 17915597 17915617 -83464904 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 691 251 15 41 chr15 17915627 17915896 -83464625 + L1MEd LINE L1 1010 1309 -4862 884 122 0 7 chr15 17916893 17917032 -83463489 - AluSg/x SINE Alu -2 310 173 2656 148 20 2 chr15 17917032 17917526 -83462995 - L1MA4 LINE L1 -287 6018 5498 2110 135 0 3 chr15 17918794 17919105 -83461416 + AluSx SINE Alu 1 310 -2 293 255 117 11 chr15 17919649 17919743 -83460778 + MIR SINE MIR 159 262 0 1494 235 49 4 chr15 17919779 17920055 -83460466 - L1ME4a LINE L1 -465 5701 5389 2188 88 0 3 chr15 17920055 17920340 -83460181 - AluSx SINE Alu -24 288 5 1494 235 49 4 chr15 17920340 17920525 -83459996 - L1ME4a LINE L1 -777 5389 5214 2098 114 0 0 chr15 17921017 17921298 -83459223 + AluSg SINE Alu 7 287 -23 24 0 0 0 chr15 17921301 17921325 -83459196 + AT_rich Low_complexity Low_complexity 1 24 0 2146 102 3 0 chr15 17921537 17921843 -83458678 + AluSx SINE Alu 1 307 0 1907 146 0 29 chr15 17922378 17922694 -83457827 + AluSx SINE Alu 3 309 -3 2180 108 7 0 chr15 17923380 17923667 -83456854 + AluSx SINE Alu 1 289 -23 672 121 0 10 chr15 17924057 17924156 -83456365 - MER4A LTR ERV1 -566 98 1 1006 121 79 11 chr15 17924156 17924346 -83456175 + L1MA3 LINE L1 5705 5907 -398 * 2727 188 86 13 chr15 17924344 17925021 -83455500 - L1 LINE L1 -1446 4700 3975 * 6838 121 28 19 chr15 17925013 17926501 -83454020 - L1PA3 LINE L1 -2 6153 4679 2009 103 0 21 chr15 17926501 17926810 -83453711 - AluSx SINE Alu 0 311 9 6838 121 28 19 chr15 17926810 17927024 -83453497 - L1PA3 LINE L1 -1476 4679 3052 2084 123 6 12 chr15 17927025 17927358 -83453163 - L1PB2 LINE L1 0 7570 7240 2997 199 25 27 chr15 17927358 17928321 -83452200 - L1PB2 LINE L1 -622 6948 5996 3207 213 32 10 chr15 17928342 17929255 -83451266 - L1PB2 LINE L1 -3114 4451 3509 642 365 148 25 chr15 17929258 17929640 -83450881 - LTR28 LTR ERV1 -676 344 1 7622 228 42 8 chr15 17929641 17931265 -83449256 - L1M1 LINE L1 -5870 1695 17 395 191 0 0 chr15 17933123 17933207 -83447314 - L1MA4 LINE L1 -179 6121 6041 620 238 33 0 chr15 17933226 17933377 -83447144 + FRAM SINE Alu 1 156 -20 1581 214 3 0 chr15 17933379 17933682 -83446839 + AluJo SINE Alu 1 304 -8 273 194 16 23 chr15 17933803 17933889 -83446632 + L1MB5 LINE L1 5838 5932 -238 1793 138 25 14 chr15 17933928 17934210 -83446311 + AluSx SINE Alu 3 287 -25 2534 258 58 48 chr15 17934531 17937019 -83443502 - L1M4 LINE L1 -3591 3053 455 268 188 115 10 chr15 17937016 17937112 -83443409 - L1M4 LINE L1 -3081 3065 2960 * 1269 240 14 7 chr15 17937113 17937400 -83443121 - AluJb SINE Alu -23 289 1 295 200 38 135 chr15 17937508 17937693 -83442828 + MER53 DNA DNA 23 189 0 2016 118 14 3 chr15 17938616 17938904 -83441617 + AluSg SINE Alu 1 291 -19 8048 103 32 15 chr15 17938940 17939717 -83440804 - HSMAR1 DNA Mariner 0 1287 483 2195 124 0 0 chr15 17939717 17940024 -83440497 + AluSx SINE Alu 1 307 -5 8048 103 32 15 chr15 17940024 17940417 -83440104 - HSMAR1 DNA Mariner -804 483 98 701 171 0 0 chr15 17940716 17940827 -83439694 - AluJb SINE Alu -201 111 1 786 210 80 34 chr15 17941026 17941057 -83439464 + L1ME3A LINE L1 5889 5917 -253 774 103 0 0 chr15 17941057 17941164 -83439357 - U6 snRNA snRNA 0 107 1 786 210 80 34 chr15 17941164 17941394 -83439127 + L1ME3A LINE L1 5917 6162 -8 262 186 57 14 chr15 17941555 17941625 -83438896 - L1ME3A LINE L1 -3 6167 6095 236 352 47 23 chr15 17941715 17941843 -83438678 + MIR SINE MIR 21 151 -111 405 221 43 80 chr15 17942036 17942199 -83438322 - MIR SINE MIR -16 246 90 1501 186 62 0 chr15 17942234 17942509 -83438012 - AluJb SINE Alu -20 292 1 643 232 47 62 chr15 17943045 17943256 -83437265 - L1ME1 LINE L1 -74 6092 5885 386 236 0 22 chr15 17943256 17943345 -83437176 - AluJo SINE Alu -166 136 50 933 175 55 23 chr15 17943349 17943566 -83436955 - L1ME1 LINE L1 -260 5906 5683 1736 156 43 0 chr15 17943952 17944234 -83436287 - AluJb SINE Alu -14 298 5 7110 258 72 29 chr15 17944247 17948270 -83432251 + L1MD2 LINE L1 1046 5208 -1007 1332 126 0 42 chr15 17948277 17948492 -83432029 + AluSc SINE Alu 1 206 -103 615 190 20 99 chr15 17948592 17948679 -83431842 + L1MD2 LINE L1 5298 5390 -846 1765 121 16 72 chr15 17948679 17948986 -83431535 - AluSx SINE Alu -18 294 5 615 190 20 99 chr15 17948986 17949109 -83431412 + L1MD2 LINE L1 5390 5493 -743 203 331 107 38 chr15 17949120 17949383 -83431138 - L2 LINE L2 -665 2649 2369 372 271 33 46 chr15 17949434 17949674 -83430847 - L1MC5 LINE L1 -179 7782 7546 1078 237 67 3 chr15 17950840 17951140 -83429381 + L1MD2 LINE L1 5973 6291 -137 22 0 0 0 chr15 17951357 17951379 -83429142 + AT_rich Low_complexity Low_complexity 1 22 0 497 125 20 0 chr15 17951747 17951839 -83428682 - L1MD1 LINE L1 0 7995 6146 7582 29 8 0 chr15 17952148 17953522 -83426999 - L1PA4 LINE L1 -1 6154 4776 534 275 0 0 chr15 17954005 17954125 -83426396 - FLAM_C SINE Alu -11 132 13 365 304 5 77 chr15 17954560 17954754 -83425767 + MLT1E2 LTR MaLR 1 180 -446 23 54 0 0 chr15 17956666 17956703 -83423818 + AT_rich Low_complexity Low_complexity 1 37 0 32 26 0 0 chr15 17957492 17957531 -83422990 + AT_rich Low_complexity Low_complexity 1 39 0 3699 211 57 27 chr15 17959059 17960962 -83419559 - L1MA8 LINE L1 -3 6288 4326 5133 136 66 7 chr15 17960984 17961935 -83418586 - L1MA2 LINE L1 0 6304 5298 512 256 175 6 chr15 17962527 17962887 -83417634 + L1MB2 LINE L1 1071 1491 -4822 461 290 96 21 chr15 17962924 17963294 -83417227 + L1MB2 LINE L1 1363 2158 -4225 440 223 100 50 chr15 17963520 17963957 -83416564 + L1MB2 LINE L1 2137 2611 -3771 268 252 158 12 chr15 17964204 17964452 -83416069 + L1MB2 LINE L1 2837 3119 -3263 804 281 30 9 chr15 17964461 17964792 -83415729 + L1MB2 LINE L1 4757 5094 -1288 424 256 170 0 chr15 17964787 17965010 -83415511 + L1MB2 LINE L1 5914 6174 -233 * 2191 94 10 7 chr15 17965036 17965333 -83415188 + AluSx SINE Alu 1 298 -14 802 282 64 88 chr15 17966217 17966841 -83413680 + L1M3 LINE L1 2 610 -5345 2867 238 74 44 chr15 17966884 17967491 -83413030 + L1M3 LINE L1 3978 4565 -1491 2334 98 0 7 chr15 17967491 17967787 -83412734 - AluSg SINE Alu -16 294 1 2867 238 74 44 chr15 17967787 17968520 -83412001 + L1M3 LINE L1 4565 5367 -689 376 183 0 0 chr15 17968529 17968600 -83411921 + L1PB4 LINE L1 6045 6115 -41 2118 87 18 0 chr15 17969207 17969545 -83410976 - AluSc SINE Alu 0 343 1 402 294 114 92 chr15 17970439 17971273 -83409248 + L1M4 LINE L1 445 1296 -5553 1327 181 42 19 chr15 17973286 17973416 -83407105 - L1MA9 LINE L1 -387 5925 5799 261 0 0 0 chr15 17973416 17973445 -83407076 + (TG)n Simple_repeat Simple_repeat 2 30 0 1327 181 42 19 chr15 17973445 17973624 -83406897 - L1MA9 LINE L1 -513 5799 5609 1285 185 39 4 chr15 17973618 17973899 -83406622 + L1MA9 LINE L1 5972 6262 -50 * 286 187 22 112 chr15 17974151 17974285 -83406236 - L1MEc LINE L1 -4258 2138 2017 1656 112 29 105 chr15 17974286 17974627 -83405894 - AluYb8 SINE Alu 0 317 1 432 0 0 0 chr15 17975807 17975855 -83404666 + (CA)n Simple_repeat Simple_repeat 1 48 0 2128 119 7 10 chr15 17976034 17976336 -83404185 + AluSx SINE Alu 1 301 -11 327 138 231 0 chr15 17978465 17978530 -83401991 - MADE1 DNA Mariner 0 80 1 1075 274 18 26 chr15 17979841 17980073 -83400448 + L1M4 LINE L1 3355 3587 -3261 3008 102 13 11 chr15 17980073 17980535 -83399986 - L1PA10 LINE L1 0 6168 5706 1075 274 18 26 chr15 17980535 17980916 -83399605 + L1M4 LINE L1 3587 3963 -2885 348 125 0 0 chr15 17981148 17981212 -83399309 + (TCTCTG)n Simple_repeat Simple_repeat 3 66 0 2019 82 50 4 chr15 17981212 17981491 -83399030 - AluY SINE Alu -19 292 1 1834 164 3 3 chr15 17984361 17984654 -83395867 - AluSg1 SINE Alu -15 294 2 2056 125 4 4 chr15 17984830 17985145 -83395376 + AluSg SINE Alu 1 315 0 2509 117 13 8 chr15 17986339 17986732 -83393789 + L1PA12 LINE L1 5774 6168 0 502 259 0 32 chr15 17987054 17987239 -83393282 - MER104 DNA MER2_type -1 179 1 562 292 93 40 chr15 17987341 17987589 -83392932 - MIR SINE MIR -1 261 4 318 26 0 0 chr15 17988783 17988804 -83391717 + (TG)n Simple_repeat Simple_repeat 1 60 0 318 26 0 0 chr15 17988804 17988843 -83391678 + (TG)n Simple_repeat Simple_repeat 2 40 0 264 367 36 36 chr15 17989343 17989482 -83391039 - MER5B DNA MER1_type 0 178 40 710 186 0 0 chr15 17989487 17989605 -83390916 + FLAM_A SINE Alu 1 118 -15 1073 207 161 8 chr15 17989779 17990040 -83390481 - AluJb SINE Alu -1 301 1 340 293 101 22 chr15 17991789 17991999 -83388522 + MIR SINE MIR 7 231 -31 572 189 9 9 chr15 17993888 17993994 -83386527 + U6 snRNA snRNA 1 106 -1 295 371 53 0 chr15 17994690 17994841 -83385680 - MIR SINE MIR -47 215 57 534 277 188 15 chr15 17995858 17996252 -83384269 - MLT1L LTR MaLR -153 462 1 181 296 56 28 chr15 17996258 17996329 -83384192 - L2 LINE L2 -565 2749 2677 852 224 47 47 chr15 17996334 17996548 -83383973 - MER58A DNA MER1_type -3 221 8 2066 153 7 0 chr15 17998329 17998636 -83381885 + AluSc SINE Alu 1 309 0 1364 195 136 49 chr15 17998739 17999228 -83381293 - LTR61 LTR ERV1 -2 593 1 28 61 0 0 chr15 17999722 17999771 -83380750 + AT_rich Low_complexity Low_complexity 1 49 0 52 50 0 0 chr15 18000815 18000895 -83379626 + AT_rich Low_complexity Low_complexity 1 80 0 1597 166 7 7 chr15 18002472 18002761 -83377760 - L1PA15 LINE L1 -1 6164 5876 336 313 173 50 chr15 18003421 18003983 -83376538 - L1M2 LINE L1 -5973 876 246 2106 129 0 3 chr15 18004734 18005036 -83375485 - AluSx SINE Alu -11 301 1 195 292 118 73 chr15 18005093 18005271 -83375250 - MIR3 SINE MIR 0 208 23 263 300 36 36 chr15 18006025 18006135 -83374386 + L2 LINE L2 3204 3313 0 399 261 120 20 chr15 18006445 18006631 -83373890 + MIR3 SINE MIR 3 206 -2 295 392 0 0 chr15 18007248 18007350 -83373171 + MIR SINE MIR 48 149 -59 310 258 17 17 chr15 18007874 18007994 -83372527 - MER112 DNA MER1_type -103 157 38 841 154 24 0 chr15 18008016 18008139 -83372382 - FLAM_C SINE Alu -17 126 1 907 89 0 16 chr15 18008574 18008697 -83371824 - AluSg/x SINE Alu -24 288 168 2151 121 0 0 chr15 18009074 18009363 -83371158 - AluSx SINE Alu -23 289 1 205 264 22 22 chr15 18009575 18009666 -83370855 + (TA)n Simple_repeat Simple_repeat 1 91 0 370 185 0 0 chr15 18010152 18010217 -83370304 - MER58A DNA MER1_type 0 224 160 941 167 25 19 chr15 18010221 18010383 -83370138 - AluJb SINE Alu -18 294 132 444 224 10 10 chr15 18010396 18010494 -83370027 - MER58A DNA MER1_type -9 98 1 25 65 0 0 chr15 18010943 18010989 -83369532 + AT_rich Low_complexity Low_complexity 1 46 0 2501 289 133 17 chr15 18011094 18011472 -83369049 + L2 LINE L2 1777 2110 -1203 1996 156 0 0 chr15 18011472 18011773 -83368748 - AluSx SINE Alu -11 301 1 2501 289 133 17 chr15 18011773 18012529 -83367992 + L2 LINE L2 2110 3040 -273 452 261 142 54 chr15 18012810 18013070 -83367451 + L2 LINE L2 3031 3313 0 21 0 0 0 chr15 18013203 18013224 -83367297 + AT_rich Low_complexity Low_complexity 1 21 0 1940 149 3 0 chr15 18013330 18013625 -83366896 - AluSx SINE Alu -16 296 1 22 0 0 0 chr15 18013630 18013652 -83366869 + AT_rich Low_complexity Low_complexity 1 22 0 1485 147 72 33 chr15 18014536 18014856 -83365665 + THE1C LTR MaLR 5 340 -35 507 73 0 0 chr15 18014856 18014924 -83365597 + (TA)n Simple_repeat Simple_repeat 1 68 0 1485 147 72 33 chr15 18014924 18014936 -83365585 + THE1C LTR MaLR 340 350 -25 3294 216 45 10 chr15 18014936 18015549 -83364972 - L1P5 LINE L1 -388 5766 5176 315 0 0 0 chr15 18015549 18015584 -83364937 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3294 216 45 10 chr15 18015584 18016525 -83363996 - L1P5 LINE L1 -978 5176 4125 3098 147 29 10 chr15 18016765 18017276 -83363245 + MER1A DNA MER1_type 1 521 -8 201 216 39 0 chr15 18018491 18018542 -83361979 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 21 0 0 0 chr15 18018579 18018600 -83361921 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr15 18019403 18019427 -83361094 + AT_rich Low_complexity Low_complexity 1 24 0 1685 205 10 0 chr15 18019947 18020240 -83360281 - AluJo SINE Alu -16 296 1 2357 89 3 3 chr15 18020553 18020856 -83359665 - AluSq SINE Alu -10 303 1 824 176 151 114 chr15 18021402 18021754 -83358767 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr15 18023290 18023311 -83357210 + AT_rich Low_complexity Low_complexity 1 21 0 367 186 15 7 chr15 18025045 18025140 -83355381 + L1M3 LINE L1 5683 5780 -382 27 29 0 0 chr15 18025409 18025443 -83355078 + AT_rich Low_complexity Low_complexity 1 34 0 278 259 0 12 chr15 18025578 18025659 -83354862 + (TATATG)n Simple_repeat Simple_repeat 5 84 0 402 301 75 63 chr15 18025804 18026203 -83354318 + L1M4 LINE L1 2110 2513 -3633 1773 182 106 40 chr15 18026559 18027032 -83353489 + MLT1D LTR MaLR 1 504 -1 279 167 0 0 chr15 18027487 18027535 -83352986 - L1PA12 LINE L1 -6273 1308 1261 4165 236 56 34 chr15 18027555 18030008 -83350513 + L1PA13 LINE L1 482 3042 -3755 2490 87 0 0 chr15 18030017 18030328 -83350193 + AluY SINE Alu 1 311 0 1450 223 127 19 chr15 18030420 18030901 -83349620 + MER4-int LTR ERV1 109 641 -5957 243 0 0 0 chr15 18031734 18031761 -83348760 + (TG)n Simple_repeat Simple_repeat 2 28 0 857 192 0 0 chr15 18031766 18031912 -83348609 - AluSg/x SINE Alu -31 281 136 1668 179 0 0 chr15 18033093 18033373 -83347148 + L1PA12 LINE L1 637 916 -6665 893 101 0 7 chr15 18033378 18033517 -83347004 + L1PA12 LINE L1 1616 1753 -5828 297 270 71 73 chr15 18033912 18034602 -83345919 + HSREP522 Satellite telomeric 1 688 -14 981 276 0 0 chr15 18035049 18035303 -83345218 + AluY SINE Alu 58 311 0 2092 155 77 14 chr15 18035341 18035887 -83344634 + MER4-int LTR ERV1 29 652 -5946 669 159 82 159 chr15 18035914 18036278 -83344243 + MER4-int LTR ERV1 762 1097 -5501 6092 86 6 0 chr15 18036286 18037358 -83343163 - L1PA7 LINE L1 -1 6153 5051 3066 119 8 4 chr15 18037384 18037897 -83342624 + L1P LINE L1 4555 5069 -1077 279 0 0 0 chr15 18038697 18038728 -83341793 + (T)n Simple_repeat Simple_repeat 1 31 0 2073 146 0 3 chr15 18038728 18039091 -83341430 - L1P LINE L1 -3825 2321 1960 1352 234 3 17 chr15 18039261 18039560 -83340961 - AluJo SINE Alu -16 296 2 1225 196 30 9 chr15 18040520 18040985 -83339536 + L1P4 LINE L1 5027 5496 -670 26 0 0 0 chr15 18040985 18041011 -83339510 + AT_rich Low_complexity Low_complexity 1 26 0 2157 113 0 10 chr15 18041131 18041431 -83339090 + AluSg SINE Alu 1 297 -13 1008 285 87 63 chr15 18041512 18043329 -83337192 - L1MCc LINE L1 -4326 2796 727 272 282 201 11 chr15 18044550 18044724 -83335797 - MIR SINE MIR 0 262 56 371 62 0 75 chr15 18044918 18044998 -83335523 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 1586 189 3 25 chr15 18045001 18045318 -83335203 - AluJb SINE Alu -2 310 1 2220 196 37 4 chr15 18046744 18047263 -83333258 - L1MB3 LINE L1 -2 6181 5646 686 231 171 52 chr15 18047852 18048332 -83332189 + L1M4 LINE L1 4399 4935 -1211 396 0 0 0 chr15 18048343 18048387 -83332134 + (TG)n Simple_repeat Simple_repeat 1 44 0 267 309 47 0 chr15 18048431 18048580 -83331941 + L1MA10 LINE L1 6169 6324 -10 478 278 87 20 chr15 18048818 18049070 -83331451 + LTR37B LTR ERV1 198 466 -2 309 298 24 0 chr15 18050368 18050536 -83329985 + (CA)n Simple_repeat Simple_repeat 2 173 0 243 270 19 13 chr15 18050578 18050737 -83329784 + (CA)n Simple_repeat Simple_repeat 2 161 0 282 238 49 12 chr15 18050755 18050919 -83329602 + (CA)n Simple_repeat Simple_repeat 2 171 0 2140 88 0 3 chr15 18051047 18051343 -83329178 - AluY SINE Alu -16 295 1 25 0 0 0 chr15 18052500 18052525 -83327996 + AT_rich Low_complexity Low_complexity 1 25 0 3000 53 0 0 chr15 18052528 18052978 -83327543 + L1P2 LINE L1 4989 5438 -716 6277 149 18 13 chr15 18054464 18056058 -83324463 - L1MA1 LINE L1 -9 6293 4687 2221 125 3 0 chr15 18056205 18056517 -83324004 + AluSq SINE Alu 1 313 0 1030 234 64 72 chr15 18056839 18057355 -83323166 - L1ME1 LINE L1 -19 6147 5636 298 0 0 0 chr15 18058597 18058636 -83321885 + HY3 scRNA scRNA 62 100 -1 27 0 0 0 chr15 18058636 18058663 -83321858 + AT_rich Low_complexity Low_complexity 1 27 0 1834 198 58 28 chr15 18059195 18059696 -83320825 - L1MA7 LINE L1 -7 6284 5769 2262 211 60 28 chr15 18059700 18060348 -83320173 - L1MB8 LINE L1 -2 6176 5508 * 3975 193 40 18 chr15 18060342 18061860 -83318661 - L1MA7 LINE L1 -510 5781 4230 21 0 0 0 chr15 18063172 18063193 -83317328 + AT_rich Low_complexity Low_complexity 1 21 0 333 140 0 0 chr15 18064320 18064377 -83316144 + (A)n Simple_repeat Simple_repeat 1 57 0 33 73 0 0 chr15 18065084 18065152 -83315369 + AT_rich Low_complexity Low_complexity 1 68 0 454 230 0 9 chr15 18065152 18065265 -83315256 - L1MA7 LINE L1 -1904 4242 4131 425 257 167 46 chr15 18068886 18069095 -83311426 - MIR SINE MIR 0 262 34 199 158 26 0 chr15 18069120 18069158 -83311363 + MIR SINE MIR 102 140 -122 273 167 0 0 chr15 18070038 18070092 -83310429 + (CA)n Simple_repeat Simple_repeat 2 55 0 404 249 35 47 chr15 18070808 18070977 -83309544 + MLT1L LTR MaLR 422 588 -27 327 235 287 0 chr15 18071088 18071203 -83309318 + MIR SINE MIR 18 165 -97 1284 231 4 4 chr15 18071604 18071881 -83308640 - AluJb SINE Alu -35 277 1 25 31 0 0 chr15 18071961 18071993 -83308528 + AT_rich Low_complexity Low_complexity 1 32 0 1770 159 120 26 chr15 18072580 18072971 -83307550 + MSTA LTR MaLR 1 428 0 737 195 0 8 chr15 18073299 18073427 -83307094 + AluJb SINE Alu 6 132 -180 578 231 88 6 chr15 18073459 18073639 -83306882 + FAM SINE Alu 1 59 0 216 0 0 0 chr15 18074254 18074278 -83306243 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1012 199 5 0 chr15 18074396 18074582 -83305939 - MER3 DNA MER1_type 0 209 23 22 0 0 0 chr15 18075355 18075377 -83305144 + AT_rich Low_complexity Low_complexity 1 22 0 503 281 88 38 chr15 18075496 18075719 -83304802 + L1ME4a LINE L1 5535 5780 -341 1597 174 7 3 chr15 18075719 18076006 -83304515 - AluSx SINE Alu -23 289 2 503 281 88 38 chr15 18076006 18076102 -83304419 + L1ME4a LINE L1 5780 5870 -251 262 309 31 62 chr15 18076182 18076344 -83304177 + MIR SINE MIR 105 261 -1 183 114 0 0 chr15 18076373 18076408 -83304113 + (CA)n Simple_repeat Simple_repeat 1 35 0 326 252 18 72 chr15 18076454 18076565 -83303956 + L1ME4a LINE L1 6014 6118 -3 1512 201 10 16 chr15 18076607 18076920 -83303601 + AluJo SINE Alu 1 311 -1 2310 130 103 140 chr15 18076962 18077555 -83302966 - LTR4 LTR ERV1 0 596 26 207 167 0 0 chr15 18078681 18078723 -83301798 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 720 236 62 0 chr15 18078816 18078977 -83301544 + MIR SINE MIR 20 190 -72 462 210 70 51 chr15 18079478 18079656 -83300865 + MLT1D LTR MaLR 6 193 -289 1104 181 4 69 chr15 18079658 18079934 -83300587 + AluJb SINE Alu 5 262 -50 1336 239 52 49 chr15 18083885 18084417 -83296104 + MER67C LTR ERV1 22 514 0 23 33 0 0 chr15 18084693 18084723 -83295798 + AT_rich Low_complexity Low_complexity 1 30 0 257 327 47 0 chr15 18084862 18084969 -83295552 - MIR SINE MIR -71 191 80 538 299 35 51 chr15 18085117 18085544 -83294977 + L1M3e LINE L1 466 1675 -4890 7931 234 43 33 chr15 18085782 18088632 -83291889 + L1M3e LINE L1 2007 4903 -2662 1474 184 6 32 chr15 18088632 18088947 -83291574 + AluJo SINE Alu 6 312 0 7931 234 43 33 chr15 18088947 18090097 -83290424 + L1M3e LINE L1 4903 6041 -1524 24 32 0 0 chr15 18090619 18090650 -83289871 + GC_rich Low_complexity Low_complexity 1 31 0 405 294 17 6 chr15 18092396 18092573 -83287948 + (CA)n Simple_repeat Simple_repeat 1 179 0 257 315 9 0 chr15 18092607 18092718 -83287803 + (CA)n Simple_repeat Simple_repeat 1 112 0 1069 169 15 0 chr15 18093728 18093923 -83286598 + MER49 LTR ERV1 715 912 -11 22 56 0 0 chr15 18095509 18095545 -83284976 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr15 18097054 18097084 -83283437 + AT_rich Low_complexity Low_complexity 1 30 0 38 39 0 0 chr15 18097107 18097159 -83283362 + AT_rich Low_complexity Low_complexity 1 52 0 318 296 7 44 chr15 18097185 18097320 -83283201 - L1MDa LINE L1 -3961 2465 2336 2034 125 10 0 chr15 18097323 18097628 -83282893 - AluSp SINE Alu -3 310 3 590 318 52 16 chr15 18097851 18098235 -83282286 - L1MDa LINE L1 -3568 2858 2461 234 238 161 52 chr15 18098332 18098525 -83281996 - L1MDa LINE L1 -4282 2325 2112 378 312 50 72 chr15 18098552 18098707 -83281814 - L1MDa LINE L1 -4503 1923 1773 4563 17 6 0 chr15 18098707 18099224 -83281297 + L1PA3 LINE L1 5636 6155 0 378 312 50 72 chr15 18099224 18099289 -83281232 - L1MDa LINE L1 -4653 1773 1708 243 355 73 32 chr15 18099622 18099746 -83280775 - MIR SINE MIR -57 151 23 302 313 57 17 chr15 18100800 18100976 -83279545 + HERV16 LTR ERVL 2781 2963 -2033 970 65 0 0 chr15 18105010 18105133 -83275388 + AluY SINE Alu 1 123 -188 22 35 0 0 chr15 18105133 18105162 -83275359 + AT_rich Low_complexity Low_complexity 1 29 0 21 95 0 0 chr15 18105327 18105390 -83275131 + AT_rich Low_complexity Low_complexity 1 63 0 309 129 86 43 chr15 18107517 18107587 -83272934 + AluJ/FRAM SINE Alu 229 301 -1 1987 124 0 3 chr15 18107595 18107894 -83272627 + AluSp SINE Alu 1 298 -15 1496 168 37 17 chr15 18108204 18108501 -83272020 - AluJb SINE Alu -9 303 1 256 286 174 39 chr15 18108555 18108589 -83271932 + MIR SINE MIR 2 30 -232 204 67 0 0 chr15 18108589 18108619 -83271902 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 256 286 174 39 chr15 18108619 18108762 -83271759 + MIR SINE MIR 30 203 -59 1675 101 0 0 chr15 18108769 18109007 -83271514 - AluSg/x SINE Alu -7 303 66 239 186 0 17 chr15 18109809 18109868 -83270653 + CT-rich Low_complexity Low_complexity 5 62 0 22 0 0 0 chr15 18110736 18110758 -83269763 + AT_rich Low_complexity Low_complexity 1 22 0 1968 150 0 3 chr15 18110809 18111122 -83269399 - AluSx SINE Alu 0 312 1 2319 79 0 0 chr15 18112715 18113018 -83267503 - AluY SINE Alu -8 303 1 301 294 32 54 chr15 18113432 18113653 -83266868 + L1ME LINE L1 5547 5762 -359 301 335 152 6 chr15 18113878 18114042 -83266479 - MIR3 SINE MIR -7 201 14 1438 81 5 0 chr15 18114431 18114616 -83265905 + AluSp SINE Alu 1 186 -127 21 0 0 0 chr15 18114786 18114807 -83265714 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr15 18114969 18115011 -83265510 + (TAA)n Simple_repeat Simple_repeat 1 42 0 4647 70 22 31 chr15 18115049 18115486 -83265035 + PABL_B LTR ERV1 1 432 -235 2395 80 3 0 chr15 18115486 18115786 -83264735 + AluSp SINE Alu 1 301 -12 4647 70 22 31 chr15 18115786 18115993 -83264528 + PABL_B LTR ERV1 432 639 -28 326 336 76 72 chr15 18116185 18116700 -83263821 - LTR33A LTR ERVL -4 519 3 355 272 26 0 chr15 18116757 18116845 -83263676 - MIR3 SINE MIR -45 163 73 231 323 0 16 chr15 18116949 18117011 -83263510 + L2 LINE L2 3204 3264 -8 330 182 0 0 chr15 18117595 18117661 -83262860 + GA-rich Low_complexity Low_complexity 1 66 0 248 221 0 15 chr15 18118109 18118177 -83262344 + GA-rich Low_complexity Low_complexity 3 69 0 380 215 33 66 chr15 18118763 18118884 -83261637 + L1MC4 LINE L1 7434 7550 -492 453 292 38 14 chr15 18119314 18119523 -83260998 + L1MC4 LINE L1 7689 7902 -140 208 313 16 0 chr15 18119533 18119597 -83260924 + (TATG)n Simple_repeat Simple_repeat 4 68 0 338 230 36 43 chr15 18119598 18119737 -83260784 + L1MC4 LINE L1 7903 8040 -2 1557 157 28 0 chr15 18119806 18120054 -83260467 + AluJb SINE Alu 3 257 -55 271 207 0 0 chr15 18120138 18120196 -83260325 - MLT1I LTR MaLR -12 397 340 1522 186 11 0 chr15 18120341 18120656 -83259865 - AluJb SINE Alu 0 318 1 785 254 54 94 chr15 18121169 18121575 -83258946 + MLT1I LTR MaLR 18 407 -2 824 254 36 10 chr15 18122577 18122770 -83257751 - AluJb SINE Alu -28 284 87 2490 216 75 28 chr15 18123728 18124433 -83256088 - L1ME2 LINE L1 -37 6127 5390 229 200 0 0 chr15 18124470 18124510 -83256011 + L2 LINE L2 3265 3304 -9 1135 267 160 13 chr15 18126598 18127169 -83253352 - L2 LINE L2 -126 3187 2536 533 212 35 104 chr15 18127485 18127716 -83252805 + MER58C DNA MER1_type 1 215 0 21 0 0 0 chr15 18128721 18128742 -83251779 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr15 18128763 18128791 -83251730 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr15 18129418 18129446 -83251075 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr15 18129873 18129891 -83250630 + (CA)n Simple_repeat Simple_repeat 1 44 0 234 0 0 0 chr15 18129891 18129917 -83250604 + (CA)n Simple_repeat Simple_repeat 2 27 0 25 51 0 0 chr15 18130851 18130890 -83249631 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr15 18131385 18131407 -83249114 + AT_rich Low_complexity Low_complexity 1 22 0 465 297 62 16 chr15 18131615 18131807 -83248714 + L1ME LINE L1 3 203 -5867 320 280 33 47 chr15 18131848 18131998 -83248523 + L1ME LINE L1 595 742 -5328 231 225 0 0 chr15 18136277 18136317 -83244204 + Tigger7 DNA MER2_type 228 267 -2220 270 176 20 0 chr15 18136330 18136381 -83244140 + Tigger7 DNA MER2_type 2536 2587 0 2036 128 0 19 chr15 18136413 18136726 -83243795 - AluSx SINE Alu -5 307 1 2240 61 7 17 chr15 18137117 18137442 -83243079 - AluY SINE Alu 0 311 1 466 190 20 0 chr15 18137672 18137772 -83242749 + L1MB5 LINE L1 5743 5844 -330 285 289 40 27 chr15 18138265 18138414 -83242107 - L1MC/D LINE L1 -2342 5466 5316 * 857 215 47 6 chr15 18138393 18138623 -83241898 - L1MB4 LINE L1 -119 6047 5792 1357 248 126 63 chr15 18138623 18138960 -83241561 - L1MB4 LINE L1 -1375 4771 4457 246 114 0 0 chr15 18138960 18138995 -83241526 - U2 snRNA snRNA -153 35 1 1357 248 126 63 chr15 18138995 18139528 -83240993 - L1MB4 LINE L1 -1689 4457 3810 849 318 146 52 chr15 18139530 18140256 -83240265 + L2 LINE L2 1822 2615 -699 855 322 107 29 chr15 18140352 18140725 -83239796 + L2 LINE L2 2824 3239 -74 960 139 0 0 chr15 18140725 18140883 -83239638 + (TA)n Simple_repeat Simple_repeat 2 159 0 855 322 107 29 chr15 18140883 18140956 -83239565 + L2 LINE L2 3239 3305 -8 663 317 45 5 chr15 18141416 18141759 -83238762 - LTR33 LTR ERVL -2 519 102 334 291 60 15 chr15 18141833 18141967 -83238554 - MLT1L LTR MaLR -112 503 364 225 309 85 0 chr15 18142376 18142470 -83238051 - L3 LINE CR1 -157 1420 1319 26 82 0 0 chr15 18143606 18143667 -83236854 + AT_rich Low_complexity Low_complexity 1 61 0 225 182 45 30 chr15 18193891 18193957 -83186564 - MLT1J LTR MaLR -51 460 394 2101 114 3 23 chr15 18194155 18194461 -83186060 - AluSg SINE Alu -10 300 1 434 266 87 52 chr15 18194537 18194829 -83185692 - L1M4 LINE L1 -2163 3983 3674 2439 82 0 7 chr15 18194829 18195134 -83185387 - AluY SINE Alu -4 307 5 434 266 87 52 chr15 18195134 18195210 -83185311 - L1M4 LINE L1 -2472 3674 3602 22 35 0 0 chr15 18195398 18195427 -83185094 + AT_rich Low_complexity Low_complexity 1 29 0 2011 129 11 52 chr15 18196346 18196694 -83183827 + MER1B DNA MER1_type 3 336 -1 431 281 97 72 chr15 18196881 18197312 -83183209 + HAL1b LINE L1 70 511 -837 6697 67 7 70 chr15 18197675 18199100 -83181421 + SVA Other Other 339 1402 0 28 48 0 0 chr15 18199119 18199161 -83181360 + AT_rich Low_complexity Low_complexity 1 42 0 2558 55 0 16 chr15 18201237 18201547 -83178974 - AluY SINE Alu -6 305 1 872 221 37 28 chr15 18201677 18201894 -83178627 - MER20 DNA MER1_type 0 219 1 353 286 93 65 chr15 18202282 18202572 -83177949 + HAL1 LINE L1 43 340 -2167 1999 142 3 28 chr15 18202853 18203171 -83177350 - AluJo SINE Alu -2 310 1 2137 138 3 0 chr15 18203235 18203540 -83176981 + AluSp SINE Alu 1 306 -7 311 261 119 40 chr15 18203579 18203755 -83176766 + HAL1 LINE L1 881 1070 -1437 570 248 122 91 chr15 18203822 18204297 -83176224 + MLT1H1 LTR MaLR 66 555 0 908 256 125 27 chr15 18204298 18204810 -83175711 + HAL1 LINE L1 1069 1630 -877 251 204 0 0 chr15 18204840 18204889 -83175632 - MIR SINE MIR -30 232 184 243 0 0 0 chr15 18204901 18204928 -83175593 + (CA)n Simple_repeat Simple_repeat 2 28 0 2043 116 32 0 chr15 18205057 18205341 -83175180 + AluSx SINE Alu 1 293 -19 2369 81 0 0 chr15 18206021 18206318 -83174203 + AluY SINE Alu 1 297 -14 235 319 8 34 chr15 18206429 18206548 -83173973 + CT-rich Low_complexity Low_complexity 6 121 0 21 0 0 0 chr15 18207398 18207419 -83173102 + AT_rich Low_complexity Low_complexity 1 21 0 2099 124 13 0 chr15 18207612 18207910 -83172611 - AluSg SINE Alu -6 304 3 1809 142 68 0 chr15 18208070 18208224 -83172297 - AluSx SINE Alu -12 300 158 1647 90 14 0 chr15 18208224 18208435 -83172086 - AluSg SINE Alu -85 225 12 1809 142 68 0 chr15 18208435 18208561 -83171960 - AluSx SINE Alu -154 158 1 913 144 0 0 chr15 18208564 18208696 -83171825 - FLAM_C SINE Alu -11 132 1 826 221 47 35 chr15 18209101 18209359 -83171162 - MER58B DNA MER1_type -1 340 80 2314 101 0 3 chr15 18209917 18210213 -83170308 - AluSg SINE Alu -15 295 1 22 0 0 0 chr15 18210472 18210494 -83170027 + AT_rich Low_complexity Low_complexity 1 22 0 289 319 111 25 chr15 18211947 18212496 -83168025 + HAL1b LINE L1 293 888 -460 41 48 0 0 chr15 18212754 18212816 -83167705 + AT_rich Low_complexity Low_complexity 1 62 0 30 77 0 0 chr15 18212947 18213012 -83167509 + AT_rich Low_complexity Low_complexity 1 65 0 21 0 0 0 chr15 18214283 18214304 -83166217 + AT_rich Low_complexity Low_complexity 1 21 0 2309 85 0 3 chr15 18214367 18214661 -83165860 + AluY SINE Alu 1 293 -18 318 26 0 0 chr15 18214661 18214700 -83165821 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2095 107 0 53 chr15 18215073 18215391 -83165130 - AluSg SINE Alu -9 301 1 243 0 0 0 chr15 18216450 18216477 -83164044 + (CA)n Simple_repeat Simple_repeat 2 28 0 2001 125 0 34 chr15 18217301 18217598 -83162923 + AluSx SINE Alu 1 287 -25 25 0 0 0 chr15 18217598 18217623 -83162898 + AT_rich Low_complexity Low_complexity 1 25 0 650 218 69 55 chr15 18218296 18218498 -83162023 - MIR SINE MIR 0 262 58 26 0 0 0 chr15 18220960 18220986 -83159535 + AT_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr15 18221260 18221284 -83159237 + (T)n Simple_repeat Simple_repeat 1 24 0 7750 39 2 3 chr15 18223565 18224510 -83156011 + L1PA4 LINE L1 5209 6152 -3 2057 141 0 0 chr15 18224780 18225079 -83155442 - AluSx SINE Alu -13 299 1 2401 92 0 0 chr15 18225448 18225752 -83154769 - AluSg SINE Alu -2 308 5 2213 262 96 10 chr15 18225766 18226541 -83153980 - L1ME1 LINE L1 -3 6163 5323 630 171 49 0 chr15 18226617 18226740 -83153781 - LTR53 LTR ERVL -40 479 351 26 30 0 0 chr15 18227066 18227099 -83153422 + AT_rich Low_complexity Low_complexity 1 33 0 2704 160 86 0 chr15 18227099 18227623 -83152898 - L1MB3 LINE L1 -8 6175 5607 2167 92 7 3 chr15 18227629 18227921 -83152600 - AluY SINE Alu -18 293 1 909 157 0 0 chr15 18227963 18228097 -83152424 - FRAM SINE Alu -25 151 18 657 218 46 6 chr15 18228972 18229146 -83151375 + L1ME2 LINE L1 5982 6162 -2 2220 110 3 0 chr15 18229166 18229466 -83151055 + AluSx SINE Alu 1 301 -11 874 160 17 66 chr15 18230106 18230287 -83150234 - AluSg/x SINE Alu -13 299 128 351 280 0 24 chr15 18230631 18230756 -83149765 + CT-rich Low_complexity Low_complexity 3 124 0 507 291 0 7 chr15 18230790 18231461 -83149060 + CT-rich Low_complexity Low_complexity 1 666 0 277 325 195 0 chr15 18232115 18232238 -83148283 - MIR3 SINE MIR -9 199 53 1344 97 0 0 chr15 18232578 18232754 -83147767 - AluSp SINE Alu -2 311 136 536 254 179 20 chr15 18232889 18233090 -83147431 - MIR SINE MIR -10 252 20 363 44 0 0 chr15 18233284 18233329 -83147192 + (CA)n Simple_repeat Simple_repeat 2 46 0 252 154 39 0 chr15 18233333 18233385 -83147136 - L1MC4a LINE L1 -1870 5938 5885 269 265 68 26 chr15 18234718 18234835 -83145686 - L2 LINE L2 -5 3308 3187 196 282 176 0 chr15 18234832 18234917 -83145604 - MIR3 SINE MIR 0 208 109 * 2034 109 13 33 chr15 18235276 18235579 -83144942 + AluSx SINE Alu 3 299 -13 576 204 138 13 chr15 18235732 18235884 -83144637 + MIR SINE MIR 28 198 -64 26 30 0 0 chr15 18235927 18235960 -83144561 + AT_rich Low_complexity Low_complexity 1 33 0 1735 153 19 16 chr15 18238986 18239294 -83141227 + L1MB7 LINE L1 5876 6184 0 887 168 14 0 chr15 18239777 18239955 -83140566 + AluJb SINE Alu 138 317 0 1870 195 23 21 chr15 18239955 18240340 -83140181 + L1MB2 LINE L1 5778 6163 -8 1642 216 90 38 chr15 18240939 18241383 -83139138 - MLT1D LTR MaLR 0 505 39 1182 117 6 0 chr15 18241386 18241557 -83138964 - L1PA11 LINE L1 -232 5942 5771 1633 218 128 2 chr15 18241557 18241970 -83138551 - MLT2B1 LTR ERVL -55 465 1 372 97 194 0 chr15 18241971 18242043 -83138478 + AluJb SINE Alu 24 109 -193 1739 145 30 13 chr15 18242045 18242349 -83138172 - AluSp SINE Alu -3 310 2 685 131 9 9 chr15 18242379 18242486 -83138035 + AluJb SINE Alu 2 108 -204 1761 147 13 19 chr15 18242492 18242805 -83137716 - AluSp SINE Alu -2 311 1 815 133 23 0 chr15 18242810 18242938 -83137583 - AluSp SINE Alu -180 133 3 616 179 18 9 chr15 18242969 18243081 -83137440 + AluJb SINE Alu 2 114 -198 1749 144 13 16 chr15 18243081 18243387 -83137134 - AluSp SINE Alu -4 309 5 1406 155 12 81 chr15 18243421 18243538 -83136983 + AluJo SINE Alu 1 124 -188 1688 116 23 76 chr15 18243538 18243840 -83136681 - AluSp SINE Alu -26 287 2 1406 155 12 81 chr15 18243840 18244057 -83136464 + AluJo SINE Alu 124 312 0 185 232 143 0 chr15 18244316 18244372 -83136149 - MIR SINE MIR -93 169 106 24 67 0 0 chr15 18245499 18245544 -83134977 + AT_rich Low_complexity Low_complexity 1 45 0 28 0 0 0 chr15 18245800 18245828 -83134693 + AT_rich Low_complexity Low_complexity 1 28 0 205 180 49 0 chr15 18246105 18246166 -83134355 + (TTA)n Simple_repeat Simple_repeat 3 66 0 306 125 0 0 chr15 18246687 18246735 -83133786 + (A)n Simple_repeat Simple_repeat 1 48 0 2182 102 0 30 chr15 18246739 18247042 -83133479 + AluY SINE Alu 5 298 -13 420 20 0 0 chr15 18247305 18247354 -83133167 + (TA)n Simple_repeat Simple_repeat 1 49 0 993 220 114 32 chr15 18248048 18248425 -83132096 - LTR37A LTR ERV1 0 426 19 218 122 0 41 chr15 18248704 18248753 -83131768 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 2376 71 0 19 chr15 18250003 18250313 -83130208 + AluY SINE Alu 1 304 -7 2079 137 0 0 chr15 18250666 18250973 -83129548 - AluSx SINE Alu -5 307 1 234 225 122 27 chr15 18251028 18251161 -83129360 - MIR SINE MIR -59 203 52 21 36 0 0 chr15 18252185 18252213 -83128308 + AT_rich Low_complexity Low_complexity 1 28 0 664 256 84 9 chr15 18252314 18252529 -83127992 - L1ME3 LINE L1 -199 5963 5733 244 263 62 0 chr15 18252532 18252612 -83127909 - L1ME3 LINE L1 -536 5634 5550 2599 56 0 0 chr15 18252761 18253063 -83127458 + AluY SINE Alu 1 302 -9 484 272 35 99 chr15 18254168 18254254 -83126267 - MIR SINE MIR -49 213 123 1703 113 4 0 chr15 18254254 18254484 -83126037 - AluSx SINE Alu -24 288 58 484 272 35 99 chr15 18254484 18254599 -83125922 - MIR SINE MIR -139 123 25 196 313 164 36 chr15 18254975 18255170 -83125351 - L2 LINE L2 -8 3264 3045 1807 102 82 0 chr15 18255357 18255613 -83124908 + AluSq SINE Alu 35 311 -2 181 348 58 29 chr15 18255619 18255757 -83124764 - L2 LINE L2 -401 2913 2772 298 215 31 0 chr15 18255767 18255832 -83124689 - MLT1K LTR MaLR -39 549 483 251 364 0 68 chr15 18256067 18256199 -83124322 + MIR SINE MIR 24 146 -62 2420 78 0 0 chr15 18256229 18256523 -83123998 - AluY SINE Alu -17 294 1 452 194 21 0 chr15 18257121 18257214 -83123307 - MER103 DNA DNA -21 145 51 300 275 18 37 chr15 18257260 18257369 -83123152 + MER5C DNA MER1_type 18 124 -200 1416 140 189 53 chr15 18257831 18258075 -83122446 + MER47A DNA MER2_type 1 210 -2113 207 0 0 0 chr15 18258075 18258098 -83122423 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2140 108 3 7 chr15 18258102 18258390 -83122131 - AluSq SINE Alu -26 287 1 1416 140 189 53 chr15 18258390 18258462 -83122059 + MER47A DNA MER2_type 212 366 0 2300 67 37 3 chr15 18259262 18259559 -83120962 - AluY SINE Alu 0 311 5 318 148 0 0 chr15 18259563 18259617 -83120904 + (T)n Simple_repeat Simple_repeat 1 54 0 351 0 0 0 chr15 18260864 18260903 -83119618 + (TG)n Simple_repeat Simple_repeat 2 40 0 243 224 0 0 chr15 18260915 18260964 -83119557 + MIR SINE MIR 184 232 -30 1009 249 127 31 chr15 18260994 18261507 -83119014 - HAL1 LINE L1 -877 1630 1069 562 240 122 91 chr15 18261508 18261983 -83118538 - MLT1H1 LTR MaLR 0 555 66 291 242 121 25 chr15 18262050 18262248 -83118273 - HAL1 LINE L1 -1437 1070 854 2305 117 0 0 chr15 18262266 18262574 -83117947 - AluSp SINE Alu -5 308 1 1937 141 19 29 chr15 18262638 18262951 -83117570 + AluJo SINE Alu 1 310 -2 419 297 90 62 chr15 18263232 18263522 -83116999 - HAL1 LINE L1 -2167 340 43 1037 203 37 28 chr15 18263906 18264123 -83116398 + MER20 DNA MER1_type 1 219 0 2466 59 7 13 chr15 18264254 18264559 -83115962 + AluY SINE Alu 1 303 -8 400 276 168 41 chr15 18264660 18264975 -83115546 - L1M4 LINE L1 -2884 3262 2908 33 0 0 0 chr15 18264990 18265023 -83115498 + AT_rich Low_complexity Low_complexity 1 33 0 2030 125 7 0 chr15 18265038 18265318 -83115203 - AluY SINE Alu -29 282 1 211 259 0 19 chr15 18265637 18265691 -83114830 + (CA)n Simple_repeat Simple_repeat 2 54 0 345 269 62 46 chr15 18267983 18268002 -83112519 + MIR SINE MIR 16 33 -229 2272 97 7 3 chr15 18268002 18268300 -83112221 + AluY SINE Alu 1 299 -12 345 269 62 46 chr15 18268300 18268410 -83112111 + MIR SINE MIR 33 147 -115 281 336 131 0 chr15 18269388 18269525 -83110996 + MIR3 SINE MIR 31 185 -23 304 278 70 17 chr15 18269545 18269660 -83110861 + L2 LINE L2 3188 3308 -5 239 173 27 80 chr15 18270936 18270989 -83109532 + L1MC4a LINE L1 5885 5934 -1874 282 56 0 0 chr15 18270989 18271025 -83109496 + (TG)n Simple_repeat Simple_repeat 2 37 0 239 173 27 80 chr15 18271025 18271046 -83109475 + L1MC4a LINE L1 5934 5955 -1853 220 216 39 0 chr15 18272240 18272291 -83108230 + MIR SINE MIR 95 147 -61 1871 141 0 54 chr15 18273325 18273638 -83106883 + AluSx SINE Alu 2 297 -15 252 238 197 8 chr15 18273655 18273777 -83106744 + MIR SINE MIR 48 192 -70 934 163 0 18 chr15 18274483 18274649 -83105872 + 7SLRNA srpRNA srpRNA 95 257 -63 261 57 0 0 chr15 18275774 18275809 -83104712 + (TGGGGG)n Simple_repeat Simple_repeat 6 40 0 189 0 0 0 chr15 18278293 18278314 -83102207 + (A)n Simple_repeat Simple_repeat 1 21 0 237 213 0 0 chr15 18278314 18278361 -83102160 + L2 LINE L2 3263 3309 -4 23 0 0 0 chr15 18278879 18278902 -83101619 + AT_rich Low_complexity Low_complexity 1 23 0 712 273 42 118 chr15 18279348 18279748 -83100773 + LTR16A LTR ERVL 68 437 -13 852 134 0 24 chr15 18279963 18280090 -83100431 + FLAM_C SINE Alu 1 124 -9 1948 112 0 0 chr15 18281102 18281360 -83099161 + AluSx SINE Alu 45 302 -10 237 366 30 22 chr15 18281555 18281689 -83098832 - L2 LINE L2 -2516 798 664 528 262 94 20 chr15 18282114 18282316 -83098205 - MIR SINE MIR -30 232 16 3499 97 15 0 chr15 18282557 18283022 -83097499 - L1PA10 LINE L1 -1 6167 5696 1310 77 0 0 chr15 18283027 18283197 -83097324 + L1PA10 LINE L1 5517 5686 -482 2517 60 0 0 chr15 18284646 18284945 -83095576 - AluY SINE Alu -12 299 1 244 300 225 0 chr15 18285475 18285595 -83094926 - MIR SINE MIR 0 262 116 245 208 21 0 chr15 18285949 18286045 -83094476 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 5168 126 22 19 chr15 18286655 18287432 -83093089 - MER4E LTR ERV1 0 779 1 24 0 0 0 chr15 18287673 18287697 -83092824 + AT_rich Low_complexity Low_complexity 1 24 0 2516 75 0 0 chr15 18287723 18288031 -83092490 + AluY SINE Alu 1 308 -3 1643 97 20 16 chr15 18289984 18290231 -83090290 - THE1C LTR MaLR -127 248 1 1581 154 68 7 chr15 18291104 18291383 -83089138 + AluSx SINE Alu 1 296 -16 2097 137 3 0 chr15 18291388 18291695 -83088826 + AluSg SINE Alu 1 308 -2 41 98 0 0 chr15 18291712 18291844 -83088677 + AT_rich Low_complexity Low_complexity 1 132 0 24 77 0 0 chr15 18291892 18291944 -83088577 + AT_rich Low_complexity Low_complexity 1 52 0 2026 93 31 10 chr15 18292101 18292392 -83088129 - AluY SINE Alu -14 297 1 2054 97 24 7 chr15 18292395 18292683 -83087838 - AluSc SINE Alu -16 293 1 2475 40 0 13 chr15 18293333 18293635 -83086886 - AluY SINE Alu -13 298 1 1161 239 122 29 chr15 18293648 18294066 -83086455 - MLT1E2 LTR MaLR -169 457 1 223 283 25 82 chr15 18294128 18294287 -83086234 - L2 LINE L2 -991 2323 2174 237 132 0 0 chr15 18294491 18294529 -83085992 + (CACG)n Simple_repeat Simple_repeat 1 38 0 309 211 13 0 chr15 18294530 18294606 -83085915 + MLT1D LTR MaLR 429 505 0 3770 200 61 11 chr15 18294644 18295449 -83085072 + L1MB7 LINE L1 4735 5636 -548 2027 118 0 0 chr15 18295449 18295728 -83084793 + AluSx SINE Alu 34 312 0 3770 200 61 11 chr15 18295728 18296286 -83084235 + L1MB7 LINE L1 5636 6165 -19 337 283 261 11 chr15 18296318 18296771 -83083750 + L1M4 LINE L1 3826 4391 -1755 209 200 0 0 chr15 18297369 18297409 -83083112 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 424 171 68 0 chr15 18298610 18298698 -83081823 + MSTC LTR MaLR 1 94 -334 227 300 50 40 chr15 18298844 18298944 -83081577 - L2 LINE L2 -3 3269 3169 2286 74 7 7 chr15 18300007 18300303 -83080218 + AluY SINE Alu 1 296 -15 2284 72 10 7 chr15 18300316 18300609 -83079912 + AluY SINE Alu 2 295 -16 540 218 142 58 chr15 18300610 18300835 -83079686 - L1MC4a LINE L1 -1520 6288 6045 1845 208 42 17 chr15 18300980 18301336 -83079185 - MLT1A1 LTR MaLR 0 365 1 2868 105 0 5 chr15 18301630 18302021 -83078500 - MER1A DNA MER1_type 0 529 141 21 36 0 0 chr15 18304503 18304531 -83075990 + AT_rich Low_complexity Low_complexity 1 28 0 36 62 0 0 chr15 18304987 18305051 -83075470 + AT_rich Low_complexity Low_complexity 1 64 0 1513 115 5 0 chr15 18305219 18305427 -83075094 + AluSc SINE Alu 84 292 -17 22 0 0 0 chr15 18305700 18305722 -83074799 + AT_rich Low_complexity Low_complexity 1 22 0 2381 109 0 0 chr15 18305755 18306066 -83074455 - AluSx SINE Alu -1 311 1 482 270 138 6 chr15 18306099 18306258 -83074263 - L1MD3 LINE L1 -1153 6842 6663 2115 134 3 6 chr15 18306350 18306663 -83073858 - AluSx SINE Alu 0 312 1 436 314 147 17 chr15 18306852 18307116 -83073405 - L1MC4a LINE L1 -1561 6247 5926 1961 133 3 7 chr15 18307116 18307424 -83073097 - AluSq SINE Alu -6 307 1 436 314 147 17 chr15 18307424 18307506 -83073015 - L1MC4a LINE L1 -1882 5926 5856 28 0 0 0 chr15 18308442 18308470 -83072051 + AT_rich Low_complexity Low_complexity 1 28 0 342 0 0 0 chr15 18308483 18308521 -83072000 + (CA)n Simple_repeat Simple_repeat 1 38 0 854 223 118 28 chr15 18308674 18308961 -83071560 - L1ME2 LINE L1 -1 6163 5851 1932 140 13 13 chr15 18310025 18310325 -83070196 - AluSg1 SINE Alu -9 300 1 972 209 42 35 chr15 18310556 18310815 -83069706 - MER58B DNA MER1_type -1 340 80 1627 87 8 75 chr15 18310821 18311073 -83069448 + AluSx SINE Alu 1 235 -77 233 269 0 0 chr15 18311118 18311170 -83069351 - MER58B DNA MER1_type -277 64 13 297 0 0 0 chr15 18311176 18311209 -83069312 + (CA)n Simple_repeat Simple_repeat 1 33 0 812 209 65 13 chr15 18311319 18311549 -83068972 - L1ME2 LINE L1 -2221 5564 5323 2027 169 120 2 chr15 18311622 18312047 -83068474 - LTR53 LTR ERVL -40 479 5 588 246 17 17 chr15 18312092 18312271 -83068250 - L1MDa LINE L1 -4821 1719 1541 458 226 73 7 chr15 18312278 18312415 -83068106 + MER21B LTR ERV1 661 806 -57 2430 86 0 0 chr15 18312988 18313289 -83067232 - AluY SINE Alu -10 301 1 25 31 0 0 chr15 18313701 18313733 -83066788 + AT_rich Low_complexity Low_complexity 1 32 0 660 137 0 0 chr15 18313733 18313835 -83066686 - L1MB3 LINE L1 -8 6175 6074 648 237 0 0 chr15 18313845 18313963 -83066558 - FLAM_C SINE Alu -24 119 2 1532 155 43 18 chr15 18313964 18314242 -83066279 - L1MB3 LINE L1 -572 5608 5324 2193 110 3 13 chr15 18314243 18314551 -83065970 - AluSq SINE Alu -8 305 1 1333 108 0 0 chr15 18314560 18314736 -83065785 - AluY SINE Alu -5 306 131 867 184 0 13 chr15 18315112 18315264 -83065257 + FRAM SINE Alu 6 155 -21 262 350 34 0 chr15 18315272 18315389 -83065132 + MIR SINE MIR 141 261 -1 2137 203 69 19 chr15 18315412 18315978 -83064543 - L1MEc LINE L1 -2870 3345 2752 1263 126 0 0 chr15 18315978 18316145 -83064376 + AluSq SINE Alu 1 167 -146 416 172 0 0 chr15 18316145 18316209 -83064312 + AluS SINE Alu 233 296 -15 755 258 144 25 chr15 18316902 18317270 -83063251 - L1MEc LINE L1 -3589 2626 2215 355 302 42 28 chr15 18317279 18317491 -83063030 - L1MEc LINE L1 -4332 2064 1850 2025 118 0 36 chr15 18317524 18317829 -83062692 - AluSq SINE Alu -19 294 1 1882 96 15 33 chr15 18317831 18318103 -83062418 - AluSp SINE Alu -13 300 34 2299 101 7 3 chr15 18318358 18318664 -83061857 + AluY SINE Alu 1 307 -4 325 285 89 0 chr15 18318697 18318820 -83061701 + MIR SINE MIR 129 262 0 4383 221 54 54 chr15 18319733 18321435 -83059086 - L1MDa LINE L1 -2118 4422 2722 2129 110 27 7 chr15 18321435 18321727 -83058794 - AluSq SINE Alu -15 298 1 4383 221 54 54 chr15 18321727 18322160 -83058361 - L1MDa LINE L1 -3818 2722 2291 1638 161 83 9 chr15 18322160 18322496 -83058025 + MER46B DNA MER2_type 1 236 0 4383 221 54 54 chr15 18322496 18323305 -83057216 - L1MDa LINE L1 -4249 2291 1483 192 40 0 0 chr15 18323305 18323330 -83057191 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 369 149 0 0 chr15 18323352 18323419 -83057102 + (TCCCG)n Simple_repeat Simple_repeat 4 70 0 1856 146 4 0 chr15 18323421 18323696 -83056825 - AluSg SINE Alu -34 276 1 315 217 80 51 chr15 18325190 18325365 -83055156 - L1MC4a LINE L1 -1926 5882 5703 2371 89 0 3 chr15 18325367 18325670 -83054851 + AluSq SINE Alu 1 302 -11 990 61 0 0 chr15 18326045 18326159 -83054362 - AluY SINE Alu -197 114 1 540 295 70 44 chr15 18326162 18326616 -83053905 - L1MC5 LINE L1 -179 7782 7317 365 214 32 97 chr15 18326784 18326938 -83053583 - L1MC5 LINE L1 -861 7100 6957 526 231 35 35 chr15 18326992 18327195 -83053326 - L1M4 LINE L1 -3097 3049 2847 352 267 22 0 chr15 18327263 18327353 -83053168 - L1M4 LINE L1 -3327 2819 2728 1978 163 0 0 chr15 18329458 18329747 -83050774 + AluJb SINE Alu 1 289 -23 2345 92 7 0 chr15 18329756 18330051 -83050470 + AluSq SINE Alu 1 297 -16 207 367 61 0 chr15 18330487 18330585 -83049936 - L2 LINE L2 -1 3271 3168 2385 85 3 0 chr15 18333852 18334146 -83046375 - AluSc SINE Alu -14 295 1 2029 219 75 39 chr15 18334609 18335193 -83045328 - MER77 LTR ERV1 0 605 1 1029 254 53 22 chr15 18335347 18335670 -83044851 + MER58B DNA MER1_type 4 336 -5 22 0 0 0 chr15 18335840 18335862 -83044659 + AT_rich Low_complexity Low_complexity 1 22 0 3830 192 62 59 chr15 18338292 18339108 -83041413 - L1MB5 LINE L1 0 6174 5361 2365 106 0 0 chr15 18339108 18339419 -83041102 - AluSx SINE Alu -1 311 1 3830 192 62 59 chr15 18339419 18340312 -83040209 - L1MB5 LINE L1 -813 5361 4457 1604 216 71 21 chr15 18340317 18340458 -83040063 - L1MB5 LINE L1 -2486 3660 3527 2445 73 0 0 chr15 18340458 18340758 -83039763 - AluY SINE Alu -11 300 1 1604 216 71 21 chr15 18340758 18340999 -83039522 - L1MB5 LINE L1 -2619 3527 3243 2243 115 0 13 chr15 18340999 18341312 -83039209 - AluSc SINE Alu 0 309 1 1604 216 71 21 chr15 18341312 18341451 -83039070 - L1MB5 LINE L1 -2903 3243 3112 984 199 0 5 chr15 18341456 18341652 -83038869 - AluJb SINE Alu 0 312 118 1446 227 56 13 chr15 18341652 18342114 -83038407 - L1MB5 LINE L1 -3052 3094 2613 1633 148 0 44 chr15 18342247 18342518 -83038003 + AluJb SINE Alu 23 281 -31 198 128 0 0 chr15 18342533 18342572 -83037949 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 210 183 56 0 chr15 18342573 18342644 -83037877 + (TA)n Simple_repeat Simple_repeat 1 75 0 1890 265 50 47 chr15 18342650 18343617 -83036904 - HERVL68 LTR ERVL -1920 1117 60 2293 176 109 0 chr15 18343625 18344130 -83036391 - MER68 LTR ERV1 -2 560 1 1485 170 80 43 chr15 18347321 18347733 -83032788 - MLT1C LTR MaLR 0 467 1 855 239 128 51 chr15 18347734 18348123 -83032398 - MLT1C LTR MaLR -46 421 3 347 316 6 0 chr15 18348952 18349123 -83031398 + (TG)n Simple_repeat Simple_repeat 1 172 0 779 141 0 0 chr15 18349600 18349721 -83030800 + FLAM_A SINE Alu 20 140 -2 2235 108 0 13 chr15 18350550 18350856 -83029665 + AluSg SINE Alu 1 302 -8 2256 86 7 13 chr15 18352432 18352736 -83027785 - AluSx SINE Alu -10 302 1 312 258 10 0 chr15 18354901 18355000 -83025521 + MER5A DNA MER1_type 10 98 -80 2385 88 0 0 chr15 18355234 18355531 -83024990 + AluY SINE Alu 3 299 -12 918 135 0 81 chr15 18355531 18355716 -83024805 + AluSg/x SINE Alu 134 303 -9 1003 197 170 3 chr15 18355860 18356012 -83024509 + MER2 DNA MER2_type 2 127 -217 2584 74 0 0 chr15 18356012 18356323 -83024198 + AluY SINE Alu 1 311 0 1003 197 170 3 chr15 18356323 18356464 -83024057 + MER2 DNA MER2_type 127 344 0 281 119 174 55 chr15 18356566 18356675 -83023846 + L1ME4a LINE L1 5999 6120 -1 929 178 40 0 chr15 18357723 18357897 -83022624 + MER58A DNA MER1_type 44 224 0 1771 128 33 56 chr15 18358222 18358526 -83021995 + AluSg SINE Alu 1 297 -13 1954 147 0 20 chr15 18358755 18359055 -83021466 - AluSx SINE Alu -18 294 1 192 97 0 0 chr15 18361073 18361104 -83019417 + (TG)n Simple_repeat Simple_repeat 2 32 0 2547 70 0 0 chr15 18361361 18361662 -83018859 + AluY SINE Alu 1 301 -10 814 219 39 2 chr15 18362333 18362539 -83017982 - MIR SINE MIR -21 241 31 2093 125 3 0 chr15 18362541 18362838 -83017683 - AluSx SINE Alu -14 298 1 191 105 53 0 chr15 18363720 18363758 -83016763 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 1678 142 9 89 chr15 18363758 18364095 -83016426 - AluJo SINE Alu -2 310 1 2802 193 78 70 chr15 18364103 18364985 -83015536 - L1ME1 LINE L1 -65 6101 5223 2588 122 32 32 chr15 18364985 18365418 -83015103 - Tigger2a DNA MER2_type -1 433 1 2802 193 78 70 chr15 18365418 18365455 -83015066 - L1ME1 LINE L1 -943 5223 5188 2158 119 3 0 chr15 18365986 18366281 -83014240 - AluSx SINE Alu -11 301 6 381 255 7 0 chr15 18367123 18367264 -83013257 - L1MEd LINE L1 -5279 840 699 934 218 84 4 chr15 18367287 18367512 -83013009 - L1MD3 LINE L1 -24 7971 7729 385 248 35 0 chr15 18367510 18367623 -83012898 - L1MEd LINE L1 -5405 714 598 * 302 274 38 17 chr15 18368029 18368206 -83012315 + MER58C DNA MER1_type 9 206 -9 1957 170 0 0 chr15 18369114 18369420 -83011101 - AluJb SINE Alu -6 306 1 280 399 51 22 chr15 18370985 18371123 -83009398 - L2 LINE L2 -22 3250 3109 182 214 125 18 chr15 18371424 18371480 -83009041 - L2 LINE L2 0 3272 3211 342 288 36 36 chr15 18372448 18372559 -83007962 + MER91A DNA MER1_type 66 176 -20 210 288 51 0 chr15 18372803 18372862 -83007659 - L2 LINE L2 0 3272 3211 2272 93 0 32 chr15 18373030 18373342 -83007179 - AluSc SINE Alu -7 302 1 969 197 81 102 chr15 18373418 18373753 -83006768 + MER58B DNA MER1_type 4 331 -10 442 290 92 22 chr15 18373766 18374007 -83006514 + L2 LINE L2 2770 3037 -276 450 319 81 0 chr15 18374726 18374886 -83005635 - MIR SINE MIR -17 245 73 405 248 335 9 chr15 18374959 18375177 -83005344 - L1MC4a LINE L1 -1547 6261 5973 409 202 29 0 chr15 18375260 18375364 -83005157 - L1MC4a LINE L1 -1853 5955 5849 210 191 29 15 chr15 18375558 18375626 -83004895 + CT-rich Low_complexity Low_complexity 4 72 0 1660 166 59 10 chr15 18376143 18376433 -83004088 - AluJb SINE Alu -8 304 1 248 295 27 27 chr15 18376516 18376628 -83003893 + (TCTCTG)n Simple_repeat Simple_repeat 2 113 0 671 298 55 35 chr15 18376706 18376961 -83003560 + MIR SINE MIR 3 262 0 2559 52 0 0 chr15 18377602 18377907 -83002614 - AluY SINE Alu -5 306 2 190 367 18 28 chr15 18378849 18378958 -83001563 - L2 LINE L2 -222 3050 2943 6939 31 1 3 chr15 18379502 18380376 -83000145 - L1PA4 LINE L1 0 6155 5284 22 0 0 0 chr15 18380615 18380637 -82999884 + AT_rich Low_complexity Low_complexity 1 22 0 378 323 109 19 chr15 18380638 18380895 -82999626 + L1MC/D LINE L1 4567 4846 -1300 427 255 83 23 chr15 18381220 18381436 -82999085 + L1MC/D LINE L1 5254 5482 -2326 259 244 126 0 chr15 18381759 18381894 -82998627 + MER103 DNA DNA 13 164 -2 223 191 24 0 chr15 18382673 18382715 -82997806 + (TATG)n Simple_repeat Simple_repeat 4 46 0 410 303 98 101 chr15 18382916 18383628 -82996893 - L1M2 LINE L1 -5760 1089 493 26 30 0 0 chr15 18384873 18384906 -82995615 + AT_rich Low_complexity Low_complexity 1 33 0 2104 92 10 0 chr15 18385474 18385768 -82994753 - AluY SINE Alu -14 297 1 2278 92 3 0 chr15 18385941 18386234 -82994287 - AluSp SINE Alu -19 294 1 300 246 27 45 chr15 18386242 18386352 -82994169 - L1MC4a LINE L1 -271 5850 5743 24 0 0 0 chr15 18386679 18386703 -82993818 + AT_rich Low_complexity Low_complexity 1 24 0 654 216 8 8 chr15 18386805 18386930 -82993591 - FLAM_C SINE Alu -16 127 3 21 36 0 0 chr15 18386942 18386970 -82993551 + AT_rich Low_complexity Low_complexity 1 28 0 2105 121 17 10 chr15 18387060 18387358 -82993163 - AluSx SINE Alu -12 300 1 2304 92 0 19 chr15 18387847 18388162 -82992359 - AluSp SINE Alu -4 309 1 353 253 0 53 chr15 18388215 18388310 -82992211 + L1MC4 LINE L1 6614 6703 -1339 316 245 0 43 chr15 18388312 18388406 -82992115 - L1MC4 LINE L1 -1339 6703 6614 * 353 211 16 29 chr15 18388402 18388505 -82992016 + L1MC4 LINE L1 1995 6983 -1339 341 229 21 31 chr15 18388471 18388567 -82991954 - L1MC4 LINE L1 -1339 6703 6609 * 3202 163 94 0 chr15 18388585 18389246 -82991275 - L1MB7 LINE L1 -58 6126 5404 1818 149 28 33 chr15 18389308 18389670 -82990851 - MLT1A1 LTR MaLR 0 365 6 180 243 108 40 chr15 18389750 18389824 -82990697 - MIR SINE MIR 0 262 184 420 322 47 58 chr15 18390344 18390858 -82989663 - L2 LINE L2 -5 3267 2766 561 322 104 13 chr15 18390864 18391240 -82989281 + L1ME4a LINE L1 5709 6118 -3 23 0 0 0 chr15 18391344 18391367 -82989154 + AT_rich Low_complexity Low_complexity 1 23 0 2471 71 0 0 chr15 18391589 18391898 -82988623 - AluY SINE Alu -2 309 1 1325 135 70 4 chr15 18391917 18392147 -82988374 - L1PB4 LINE L1 -7 6149 5905 1563 183 8 80 chr15 18392475 18392875 -82987646 - MLT1A2 LTR MaLR 0 374 4 2080 98 0 86 chr15 18393494 18393821 -82986700 + AluSx SINE Alu 1 299 -13 535 138 0 0 chr15 18393944 18394031 -82986490 - L1MA3 LINE L1 0 6305 6219 421 275 219 0 chr15 18394092 18394270 -82986251 - L1ME LINE L1 -303 5818 5602 2363 98 0 3 chr15 18394404 18394710 -82985811 + AluSx SINE Alu 1 305 -7 775 269 142 19 chr15 18394715 18395651 -82984870 - L1ME LINE L1 -746 5400 4487 296 186 100 0 chr15 18395991 18396061 -82984460 + L1ME4a LINE L1 5527 5603 -518 276 221 235 0 chr15 18396071 18396207 -82984314 + L1ME4a LINE L1 5651 5818 -303 2209 109 3 6 chr15 18396207 18396518 -82984003 - AluSx SINE Alu -2 310 1 237 275 7 14 chr15 18396606 18396748 -82983773 + (TA)n Simple_repeat Simple_repeat 1 141 0 256 154 77 0 chr15 18396758 18396810 -82983711 + L1ME4a LINE L1 5994 6049 -72 21 82 0 0 chr15 18396812 18396861 -82983660 + AT_rich Low_complexity Low_complexity 1 49 0 29 47 0 0 chr15 18397212 18397255 -82983266 + AT_rich Low_complexity Low_complexity 1 43 0 236 216 0 20 chr15 18397294 18397345 -82983176 - L2 LINE L2 0 3313 3264 2156 124 0 0 chr15 18397345 18397643 -82982878 - AluSx SINE Alu -12 300 3 2151 132 0 0 chr15 18397921 18398225 -82982296 - AluSx SINE Alu -8 304 1 1469 173 118 7 chr15 18398334 18398606 -82981915 + AluJb SINE Alu 1 302 0 399 262 85 50 chr15 18398969 18399110 -82981411 + MIR SINE MIR 6 151 -111 1122 69 0 21 chr15 18399120 18399264 -82981257 + AluSq SINE Alu 153 293 -20 794 74 57 0 chr15 18400942 18401064 -82979457 - L1MA5 LINE L1 0 6300 6172 1253 144 0 0 chr15 18401102 18401283 -82979238 + AluJb SINE Alu 1 181 -131 1243 251 80 43 chr15 18401288 18402000 -82978521 - L1ME LINE L1 -1695 4451 3714 3518 104 28 4 chr15 18402209 18402708 -82977813 - MER9 LTR ERVK 0 511 1 23 0 0 0 chr15 18402993 18403016 -82977505 + AT_rich Low_complexity Low_complexity 1 23 0 2478 115 3 16 chr15 18403148 18403514 -82977007 - THE1B LTR MaLR -2 362 2 1265 181 96 22 chr15 18404121 18404392 -82976129 - AluJo SINE Alu -17 295 5 183 42 0 0 chr15 18406130 18406154 -82974367 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2202 77 18 3 chr15 18406682 18406968 -82973553 + AluY SINE Alu 1 290 -21 1091 133 0 76 chr15 18407261 18407471 -82973050 + AluSq SINE Alu 1 194 -119 2448 44 7 3 chr15 18408539 18408835 -82971686 - AluY SINE Alu -14 297 1 760 248 136 76 chr15 18410479 18410950 -82969571 + MLT1F1 LTR MaLR 67 565 -2 212 222 0 16 chr15 18411118 18411181 -82969340 + GA-rich Low_complexity Low_complexity 1 62 0 180 325 38 25 chr15 18411243 18411323 -82969198 - L2 LINE L2 0 3272 3192 637 246 182 0 chr15 18411746 18411933 -82968588 + MER58A DNA MER1_type 4 224 0 2273 109 3 0 chr15 18413838 18414142 -82966379 + AluSc SINE Alu 3 307 -2 374 278 94 11 chr15 18415161 18415352 -82965169 + L1ME3 LINE L1 774 980 -5090 349 312 136 4 chr15 18415445 18415916 -82964605 + L1ME3 LINE L1 1113 1645 -4616 276 266 43 60 chr15 18415961 18416243 -82964278 + L1ME3 LINE L1 3383 3659 -2421 26 50 0 0 chr15 18416530 18416570 -82963951 + AT_rich Low_complexity Low_complexity 1 40 0 2104 102 30 13 chr15 18416578 18416882 -82963639 + AluSg SINE Alu 1 309 -1 1548 262 50 56 chr15 18416980 18417523 -82962998 + L1ME3 LINE L1 5438 5978 -118 2265 111 0 0 chr15 18417523 18417820 -82962701 - AluSq SINE Alu -16 297 1 1548 262 50 56 chr15 18417820 18417939 -82962582 + L1ME3 LINE L1 5978 6096 0 522 266 92 14 chr15 18417974 18418192 -82962329 + L1ME3 LINE L1 5603 5837 -325 312 293 146 15 chr15 18418208 18418417 -82962104 + L1ME3 LINE L1 5910 6145 -19 1959 213 30 34 chr15 18418417 18418886 -82961635 - MLT1C LTR MaLR 0 467 1 312 293 146 15 chr15 18418886 18418908 -82961613 + L1ME3 LINE L1 6145 6163 -1 21 0 0 0 chr15 18419491 18419512 -82961009 + AT_rich Low_complexity Low_complexity 1 21 0 2580 68 0 0 chr15 18419525 18419835 -82960686 - AluY SINE Alu -1 310 1 2173 94 0 13 chr15 18420569 18420876 -82959645 + AluY SINE Alu 1 303 -8 2389 52 0 23 chr15 18421510 18421818 -82958703 - AluY SINE Alu -10 301 1 1906 63 20 4 chr15 18422743 18422995 -82957526 - AluY SINE Alu -10 301 46 1036 183 0 0 chr15 18424928 18425103 -82955418 - FRAM SINE Alu -2 174 1 1372 156 5 0 chr15 18425209 18425414 -82955107 + L1MC1 LINE L1 6122 6327 -6 1984 36 0 59 chr15 18426054 18426307 -82954214 - AluY SINE Alu -14 297 60 331 179 0 0 chr15 18426916 18426972 -82953549 + FLAM_A SINE Alu 58 113 -20 833 172 32 0 chr15 18426975 18427132 -82953389 - AluSq SINE Alu -20 293 132 1602 176 37 7 chr15 18427132 18427427 -82953094 + LTR15 LTR ERV1 184 487 -6 770 181 126 85 chr15 18427493 18427608 -82952913 + AluJb SINE Alu 2 111 -201 1517 157 13 47 chr15 18427608 18427908 -82952613 - AluSp SINE Alu -17 296 7 770 181 126 85 chr15 18427908 18428062 -82952459 + AluJb SINE Alu 111 282 -30 818 109 0 23 chr15 18428074 18428202 -82952319 - AluSp SINE Alu -188 125 1 541 184 74 84 chr15 18428231 18428350 -82952171 + AluJb SINE Alu 2 120 -192 1423 142 13 58 chr15 18428350 18428661 -82951860 - AluSp SINE Alu -16 297 1 541 184 74 84 chr15 18428661 18428731 -82951790 + AluJb SINE Alu 120 189 -123 1559 152 17 20 chr15 18428749 18429046 -82951475 - AluSp SINE Alu -17 296 1 885 84 15 0 chr15 18429054 18429185 -82951336 - AluSp SINE Alu -180 133 1 576 181 9 9 chr15 18429214 18429330 -82951191 + AluJb SINE Alu 2 117 -195 1677 132 9 60 chr15 18429331 18429649 -82950872 - AluSp SINE Alu -11 302 1 1206 171 6 99 chr15 18429676 18429787 -82950734 + AluJb SINE Alu 1 121 -191 1641 141 6 32 chr15 18429787 18430100 -82950421 - AluSp SINE Alu -8 305 1 1206 171 6 99 chr15 18430100 18430332 -82950189 + AluJb SINE Alu 121 312 0 184 226 113 0 chr15 18430586 18430639 -82949882 - MIR SINE MIR -93 169 111 497 171 83 138 chr15 18430955 18431178 -82949343 + L1MC5 LINE L1 7609 7810 -151 2133 141 0 0 chr15 18431178 18431491 -82949030 + AluSq SINE Alu 1 313 0 497 171 83 138 chr15 18431491 18431594 -82948927 + L1MC5 LINE L1 7810 7917 -44 1041 99 0 0 chr15 18431812 18431943 -82948578 - AluY SINE Alu -180 131 1 431 319 73 42 chr15 18433286 18433668 -82946853 - L1MCa LINE L1 -4673 1753 1224 257 314 57 51 chr15 18433686 18433900 -82946621 - L1MCa LINE L1 -5063 1353 1142 2418 84 7 0 chr15 18433900 18434208 -82946313 - AluSg SINE Alu 0 310 1 257 314 57 51 chr15 18434208 18434467 -82946054 - L1MCa LINE L1 -5274 1142 877 389 221 62 44 chr15 18434971 18435084 -82945437 - L1MCa LINE L1 -5954 462 348 193 274 333 10 chr15 18437128 18437230 -82943291 - L2 LINE L2 -5 3267 3133 418 243 52 66 chr15 18437679 18437967 -82942554 - L1MC5 LINE L1 -184 7777 7494 1052 178 57 105 chr15 18437972 18438130 -82942391 - MLT1B LTR MaLR 0 396 232 2501 82 0 3 chr15 18438130 18438436 -82942085 - AluY SINE Alu -6 305 1 1052 178 57 105 chr15 18438436 18438521 -82942000 - MLT1B LTR MaLR -164 232 144 2306 103 7 0 chr15 18438521 18438823 -82941698 - AluSp SINE Alu -5 308 5 1052 178 57 105 chr15 18438823 18438993 -82941528 - MLT1B LTR MaLR -252 144 4 309 286 109 11 chr15 18439000 18439175 -82941346 - L1MC5 LINE L1 -465 7496 7305 400 235 61 17 chr15 18439309 18439424 -82941097 - L1MC5 LINE L1 -735 7226 7107 303 314 36 6 chr15 18439605 18439764 -82940757 - L1MC3 LINE L1 -912 6873 6692 1930 169 3 3 chr15 18439796 18440097 -82940424 - AluJb SINE Alu -9 303 3 1603 200 225 25 chr15 18440723 18441234 -82939287 - MER90 LTR ERV1 0 614 2 1855 109 4 0 chr15 18441245 18441502 -82939019 - AluSg SINE Alu -52 258 1 634 212 90 59 chr15 18442098 18442320 -82938201 - L1MC5 LINE L1 -53 7908 7680 1749 191 48 18 chr15 18443112 18443504 -82937017 - L1MB4 LINE L1 0 6180 5777 1186 143 0 0 chr15 18443504 18443679 -82936842 - AluSg/x SINE Alu -17 293 119 22 0 0 0 chr15 18443679 18443701 -82936820 + AT_rich Low_complexity Low_complexity 1 22 0 2122 123 0 7 chr15 18443914 18444216 -82936305 - AluSx SINE Alu -12 300 1 948 86 0 14 chr15 18444386 18444525 -82935996 - AluY SINE Alu 0 311 175 740 81 0 0 chr15 18444626 18444725 -82935796 + AluY SINE Alu 209 307 -4 364 283 179 36 chr15 18444783 18445648 -82934873 - L1MEc LINE L1 -4579 1817 829 2914 223 76 14 chr15 18445670 18447027 -82933494 + L1ME1 LINE L1 4493 5922 -244 990 179 0 6 chr15 18447045 18447224 -82933297 + AluJb SINE Alu 131 308 -4 628 184 14 14 chr15 18447359 18447500 -82933021 + L1MA10 LINE L1 6192 6332 -2 2532 31 41 0 chr15 18448665 18448955 -82931566 + AluY SINE Alu 1 302 -9 2331 71 0 3 chr15 18449698 18450009 -82930512 + AluY SINE Alu 1 310 0 270 0 0 0 chr15 18450645 18450675 -82929846 + (GGGAA)n Simple_repeat Simple_repeat 5 34 0 2502 238 46 26 chr15 18450877 18451617 -82928904 - L1ME3A LINE L1 -9 6161 5407 184 342 179 5 chr15 18453233 18453423 -82927098 + L2 LINE L2 1824 2046 -1268 2698 42 0 0 chr15 18454107 18454418 -82926103 + AluY SINE Alu 1 311 0 242 308 0 47 chr15 18454739 18454846 -82925675 + MER5A DNA MER1_type 32 133 -56 386 231 146 15 chr15 18455096 18455226 -82925295 - MER103 DNA DNA -12 154 8 829 196 25 27 chr15 18456448 18456635 -82923886 + L1MC3 LINE L1 6196 6357 -2 265 236 307 21 chr15 18457275 18457415 -82923106 - L2 LINE L2 -20 3293 3114 1542 122 96 0 chr15 18457758 18457988 -82922533 - AluSx SINE Alu -12 300 49 7587 87 14 21 chr15 18457988 18459052 -82921469 + MER11C LTR ERVK 1 1057 -14 345 139 0 97 chr15 18459051 18459123 -82921398 - Alu SINE Alu -245 54 1 * 369 296 78 31 chr15 18459156 18459429 -82921092 - L1ME3 LINE L1 -206 5915 5650 295 271 125 20 chr15 18459486 18459729 -82920792 - L1ME3 LINE L1 -767 5395 5257 422 233 124 30 chr15 18459837 18459991 -82920530 + L1MC4a LINE L1 5722 5901 -1907 1360 175 26 63 chr15 18459991 18460294 -82920227 + AluJb SINE Alu 1 292 -20 422 233 124 30 chr15 18460294 18460341 -82920180 + L1MC4a LINE L1 5901 5942 -1866 902 131 24 42 chr15 18460342 18460510 -82920011 - AluSp SINE Alu -121 192 28 2454 157 47 19 chr15 18460511 18460983 -82919538 + LTR15 LTR ERV1 2 486 -7 258 108 0 0 chr15 18461014 18461051 -82919470 - AluSp SINE Alu -265 37 1 606 188 8 8 chr15 18461079 18461196 -82919325 + AluJo/FLAM SINE Alu 1 117 -185 1595 149 3 50 chr15 18461199 18461521 -82919000 - AluSp SINE Alu 0 313 7 835 227 133 43 chr15 18461556 18461669 -82918852 + AluJb SINE Alu 2 103 -209 1619 163 7 10 chr15 18461669 18461976 -82918545 - AluSp SINE Alu -7 306 1 835 227 133 43 chr15 18461976 18462118 -82918403 + AluJb SINE Alu 103 280 -32 1612 166 6 43 chr15 18462124 18462449 -82918072 - AluSp SINE Alu 0 313 1 1257 154 6 101 chr15 18462477 18462594 -82917927 + AluJb SINE Alu 1 128 -184 1690 162 0 29 chr15 18462594 18462902 -82917619 - AluSp SINE Alu -14 299 1 1257 154 6 101 chr15 18462902 18463129 -82917392 + AluJb SINE Alu 128 312 0 409 220 63 107 chr15 18463755 18463980 -82916541 + L1MC5 LINE L1 7609 7817 -144 2215 124 0 0 chr15 18463980 18464286 -82916235 + AluSq SINE Alu 1 306 -7 409 220 63 107 chr15 18464286 18464378 -82916143 + L1MC5 LINE L1 7817 7912 -49 1735 150 7 7 chr15 18465575 18465855 -82914666 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr15 18465857 18465884 -82914637 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1398 208 0 4 chr15 18465924 18466169 -82914352 + AluJo SINE Alu 1 244 -68 38 61 0 0 chr15 18466911 18466977 -82913544 + AT_rich Low_complexity Low_complexity 1 66 0 21 36 0 0 chr15 18467433 18467461 -82913060 + AT_rich Low_complexity Low_complexity 1 28 0 843 85 25 8 chr15 18467673 18467791 -82912730 - AluY SINE Alu -191 120 1 1564 65 0 10 chr15 18468032 18468231 -82912290 + AluY SINE Alu 111 307 -4 1690 197 37 8 chr15 18468253 18468608 -82911913 + MLT1A1 LTR MaLR 1 365 0 935 195 32 52 chr15 18468868 18469119 -82911402 + MLT1A1 LTR MaLR 120 365 0 266 211 0 0 chr15 18469142 18469194 -82911327 + FLAM SINE Alu 80 131 -2 2364 57 3 17 chr15 18469294 18469594 -82910927 + AluY SINE Alu 1 296 -15 31 26 0 0 chr15 18469741 18469779 -82910742 + AT_rich Low_complexity Low_complexity 1 38 0 2335 82 0 3 chr15 18469797 18470103 -82910418 - AluY SINE Alu -6 305 1 329 219 36 51 chr15 18470111 18470248 -82910273 + HAL1b LINE L1 1192 1326 -22 2132 96 0 60 chr15 18470924 18471238 -82909283 + AluY SINE Alu 3 297 -14 24 0 0 0 chr15 18471500 18471524 -82908997 + AT_rich Low_complexity Low_complexity 1 24 0 970 207 110 42 chr15 18472223 18472605 -82907916 - LTR37A LTR ERV1 0 426 19 218 122 0 41 chr15 18472883 18472932 -82907589 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 341 294 12 19 chr15 18474188 18474348 -82906173 + AluY SINE Alu 1 159 -142 3378 209 31 53 chr15 18474449 18474754 -82905767 + MER41-int LTR ERV1 1655 1965 -3981 387 0 0 0 chr15 18474754 18474797 -82905724 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3378 209 31 53 chr15 18474797 18475363 -82905158 + MER41-int LTR ERV1 1965 2507 -3439 251 175 0 111 chr15 18475534 18475597 -82904924 - MER61E LTR ERV1 -415 154 99 334 263 13 0 chr15 18475600 18475676 -82904845 - LTR25 LTR ERV1 -438 356 280 8765 156 27 20 chr15 18475840 18477567 -82902954 - MER61E-int LTR ERV1 -3 6993 5281 2198 136 0 0 chr15 18477567 18477869 -82902652 - AluSg SINE Alu -8 302 1 8765 156 27 20 chr15 18477869 18477925 -82902596 - MER61E-int LTR ERV1 -1715 5281 2479 539 70 0 0 chr15 18478025 18478096 -82902425 + L1PA5 LINE L1 5875 5945 -209 1107 243 67 13 chr15 18478364 18478664 -82901857 - HERVL74 LTR ERVL -1834 3851 3536 979 270 61 0 chr15 18478675 18478953 -82901568 - HERVL74 LTR ERVL -2261 3424 3130 1595 239 28 3 chr15 18478954 18479309 -82901212 + MLT1A1 LTR MaLR 2 365 0 2639 212 16 12 chr15 18479313 18479875 -82900646 + MLT1A1-int LTR MaLR 4 567 -1168 228 67 0 0 chr15 18480044 18480074 -82900447 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 1409 325 47 16 chr15 18480211 18480719 -82899802 - HERVL74 LTR ERVL -4748 937 414 971 176 16 21 chr15 18480765 18480952 -82899569 - MER61E LTR ERV1 -43 526 341 527 154 0 0 chr15 18481096 18481174 -82899347 + FRAM SINE Alu 68 145 -31 267 31 0 0 chr15 18481174 18481206 -82899315 + (GGAGAA)n Simple_repeat Simple_repeat 3 34 0 1437 249 57 73 chr15 18481221 18481726 -82898795 + MLT-int LTR MaLR 606 1102 -633 1700 208 46 3 chr15 18481729 18482056 -82898465 + MLT1A1 LTR MaLR 25 365 0 1141 219 8 4 chr15 18482058 18482295 -82898226 - HERVL74 LTR ERVL -3661 2024 1787 12769 167 60 63 chr15 18482413 18483860 -82896661 - LTR25-int LTR ERV1 -2207 4789 3793 2241 115 0 22 chr15 18483860 18484174 -82896347 + AluSc SINE Alu 1 307 -2 12769 167 60 63 chr15 18484174 18485848 -82894673 - LTR25-int LTR ERV1 -3203 3793 2116 3984 245 38 40 chr15 18485857 18487131 -82893390 - LTR25-int LTR ERV1 -5247 1749 479 992 237 95 53 chr15 18487284 18487437 -82893084 + LTR23-int LTR ERV1 998 1143 -4803 2179 62 7 56 chr15 18487437 18487773 -82892748 + AluY SINE Alu 1 311 0 992 237 95 53 chr15 18487773 18488311 -82892210 + LTR23-int LTR ERV1 1143 2375 -3571 2417 219 51 65 chr15 18488312 18488397 -82892124 + LTR23-int LTR ERV1 2259 2344 -2536 2017 104 0 0 chr15 18488397 18488657 -82891864 - AluSx SINE Alu -9 303 44 2417 219 51 65 chr15 18488657 18489493 -82891028 + LTR23-int LTR ERV1 2344 2888 -1992 1572 249 37 31 chr15 18489544 18489864 -82890657 + LTR23-int LTR ERV1 2239 2564 -2559 2683 33 0 0 chr15 18489864 18490165 -82890356 + AluY SINE Alu 1 301 -10 1572 249 37 31 chr15 18490165 18490325 -82890196 + LTR23-int LTR ERV1 2564 2722 -2401 678 332 56 23 chr15 18490521 18490952 -82889569 - L1M3c LINE L1 -5696 445 1 1405 279 166 14 chr15 18490983 18491717 -82888804 - L1ME1 LINE L1 -7 6159 5314 804 161 7 22 chr15 18491724 18491861 -82888660 - FRAM SINE Alu -19 157 23 774 223 58 22 chr15 18491899 18492173 -82888348 - L1ME1 LINE L1 -868 5278 4995 1291 231 77 12 chr15 18492186 18492615 -82887906 - L1ME1 LINE L1 -1328 4818 4362 3713 161 19 9 chr15 18492620 18493003 -82887518 - L1PB4 LINE L1 -2 6154 5761 396 0 0 0 chr15 18493003 18493047 -82887474 + (TA)n Simple_repeat Simple_repeat 2 45 0 3713 161 19 9 chr15 18493047 18493310 -82887211 - L1PB4 LINE L1 -395 5761 5502 2170 125 3 6 chr15 18493437 18493750 -82886771 + AluSx SINE Alu 1 312 0 471 270 138 6 chr15 18493837 18493996 -82886525 + L1MD3 LINE L1 6663 6842 -1153 2187 128 0 0 chr15 18494029 18494326 -82886195 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr15 18494360 18494382 -82886139 + AT_rich Low_complexity Low_complexity 1 22 0 432 55 0 0 chr15 18494622 18494677 -82885844 + (TA)n Simple_repeat Simple_repeat 1 55 0 2178 118 3 0 chr15 18494698 18494994 -82885527 - AluSc SINE Alu -12 297 1 6093 144 16 40 chr15 18494994 18496779 -82883742 - L1MA3 LINE L1 -246 6059 4233 2317 110 0 0 chr15 18496779 18497088 -82883433 + AluSx SINE Alu 1 309 -3 6093 144 16 40 chr15 18497088 18497251 -82883270 - L1MA3 LINE L1 -2072 4233 4162 2189 133 13 0 chr15 18497251 18497559 -82882962 - AluSx SINE Alu 0 312 1 6093 144 16 40 chr15 18497559 18497598 -82882923 - L1MA3 LINE L1 -2143 4162 4124 5320 20 0 8 chr15 18497605 18498213 -82882308 - L1PA2 LINE L1 0 6155 5553 2702 29 0 0 chr15 18498213 18498527 -82881994 + L1P LINE L1 4781 5094 -1052 1149 91 0 0 chr15 18498627 18498770 -82881751 - AluY SINE Alu -168 143 1 771 261 147 12 chr15 18498770 18499104 -82881417 - L1M4 LINE L1 -938 5208 4830 331 130 0 0 chr15 18499130 18499184 -82881337 - L1MA5A LINE L1 -2 6295 6242 2029 142 3 3 chr15 18499184 18499493 -82881028 - AluSx SINE Alu -3 309 1 1982 129 3 29 chr15 18499507 18499818 -82880703 - AluJb SINE Alu -9 303 1 572 116 30 2 chr15 18499818 18499914 -82880607 - L1MC/D LINE L1 -672 5625 5520 423 138 0 0 chr15 18499969 18500034 -82880487 + L1MA5A LINE L1 6183 6247 -50 771 192 8 0 chr15 18500043 18500173 -82880348 - AluSg/x SINE Alu -49 263 133 2175 109 0 3 chr15 18500173 18500487 -82880034 - AluSx SINE Alu 0 313 1 2299 82 7 0 chr15 18500509 18500827 -82879694 - AluSg SINE Alu 0 320 1 2064 98 47 0 chr15 18501363 18501638 -82878883 + AluSx SINE Alu 13 300 -12 404 234 76 21 chr15 18503136 18503281 -82877240 - MIR SINE MIR -109 153 1 389 287 17 17 chr15 18503534 18503649 -82876872 - L1ME LINE L1 -441 5680 5566 2176 117 27 3 chr15 18503725 18504024 -82876497 - AluSx SINE Alu -6 306 1 1879 136 3 81 chr15 18504031 18504232 -82876289 - AluJo SINE Alu 0 312 146 2227 101 3 7 chr15 18504232 18504540 -82875981 - AluSg SINE Alu -3 307 1 1879 136 3 81 chr15 18504540 18504670 -82875851 - AluJo SINE Alu -166 146 7 236 88 0 0 chr15 18504881 18504915 -82875606 - Alu SINE Alu -265 34 1 780 229 28 0 chr15 18505022 18505201 -82875320 + MER5A DNA MER1_type 6 189 0 2223 118 0 7 chr15 18505518 18505822 -82874699 - AluSg SINE Alu -8 302 1 338 213 53 0 chr15 18505824 18505918 -82874603 - MIR SINE MIR -147 115 17 1954 143 0 17 chr15 18506924 18507225 -82873296 + AluJb SINE Alu 1 296 -16 1338 147 117 57 chr15 18507588 18507734 -82872787 + AluJo SINE Alu 1 137 -175 2227 109 24 0 chr15 18507734 18508028 -82872493 + AluSg SINE Alu 1 301 -9 1338 147 117 57 chr15 18508028 18508146 -82872375 + AluJo SINE Alu 137 281 -31 200 83 0 28 chr15 18508147 18508183 -82872338 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 1942 140 11 49 chr15 18508293 18508642 -82871879 - MER1B DNA MER1_type 0 337 2 986 188 28 0 chr15 18509366 18509542 -82870979 + FRAM SINE Alu 1 176 0 539 181 0 38 chr15 18509551 18509711 -82870810 + GA-rich Low_complexity Low_complexity 3 156 0 232 190 210 30 chr15 18509994 18510094 -82870427 + MLT1K LTR MaLR 125 242 -346 242 286 8 48 chr15 18510253 18510379 -82870142 + MLT1K LTR MaLR 457 577 -11 2321 129 0 0 chr15 18511459 18511770 -82868751 - AluSx SINE Alu -1 311 1 1509 169 12 0 chr15 18511878 18512132 -82868389 + AluJb SINE Alu 51 307 -5 1824 155 54 0 chr15 18512208 18512486 -82868035 + AluJo SINE Alu 3 295 -17 334 230 0 46 chr15 18512577 18512664 -82867857 + MLT1F1 LTR MaLR 62 144 -449 2784 84 0 0 chr15 18512691 18513046 -82867475 - THE1A LTR MaLR 0 355 1 445 276 125 0 chr15 18513051 18513203 -82867318 + MLT1F1 LTR MaLR 121 291 -276 1174 93 0 13 chr15 18513204 18513354 -82867167 + AluSq/x SINE Alu 2 149 -164 213 39 0 0 chr15 18513376 18513402 -82867119 + (A)n Simple_repeat Simple_repeat 1 26 0 864 209 141 30 chr15 18513402 18513665 -82866856 + MLT1F1 LTR MaLR 276 567 0 251 289 0 48 chr15 18513673 18513756 -82866765 - MLT1J LTR MaLR -431 80 2 542 159 23 15 chr15 18513839 18513971 -82866550 + CT-rich Low_complexity Low_complexity 3 135 0 809 146 23 15 chr15 18513985 18514115 -82866406 - FLAM_C SINE Alu -2 131 1 3395 155 11 14 chr15 18514151 18514713 -82865808 + LTR31 LTR ERV1 60 619 0 208 259 24 35 chr15 18514720 18514805 -82865716 + MIR SINE MIR 156 239 -23 221 0 35 0 chr15 18514827 18514856 -82865665 + (TTA)n Simple_repeat Simple_repeat 2 31 0 958 104 0 15 chr15 18514856 18514984 -82865537 - AluSp SINE Alu -185 128 1 2260 97 33 0 chr15 18515166 18515465 -82865056 - AluSx SINE Alu -1 311 3 1879 112 15 8 chr15 18515748 18516015 -82864506 + AluSx SINE Alu 33 301 -11 2298 121 0 3 chr15 18516616 18516929 -82863592 + AluSx SINE Alu 1 312 0 2051 122 28 0 chr15 18516997 18517283 -82863238 + AluSx SINE Alu 1 294 -18 1042 169 0 17 chr15 18517567 18517739 -82862782 + FAM SINE Alu 1 169 -6 1776 190 0 3 chr15 18517801 18518112 -82862409 + AluJo SINE Alu 1 310 -2 209 195 0 0 chr15 18518187 18518228 -82862293 + (TG)n Simple_repeat Simple_repeat 1 41 0 2382 103 0 25 chr15 18518294 18518614 -82861907 + AluSx SINE Alu 1 312 0 201 216 39 0 chr15 18518918 18518969 -82861552 + MIR SINE MIR 95 147 -61 390 42 0 0 chr15 18519105 18519153 -82861368 + (TTTTC)n Simple_repeat Simple_repeat 3 50 0 1837 133 0 86 chr15 18520050 18520374 -82860147 + AluSx SINE Alu 2 297 -15 321 235 144 15 chr15 18520387 18520547 -82859974 + MIR SINE MIR 45 231 -31 1025 155 0 0 chr15 18521319 18521474 -82859047 + 7SLRNA srpRNA srpRNA 95 249 -71 261 57 0 0 chr15 18522615 18522650 -82857871 + (TGGGGG)n Simple_repeat Simple_repeat 6 40 0 1007 162 133 54 chr15 18525203 18525444 -82855077 - MER61E-int LTR ERV1 -6707 289 30 618 212 109 2 chr15 18525484 18525654 -82854867 - MER61E LTR ERV1 -20 774 342 786 191 114 36 chr15 18525859 18526184 -82854337 - MSTD LTR MaLR -8 420 1 2234 241 47 2 chr15 18526184 18526674 -82853847 - MSTD-int LTR MaLR 0 1735 1224 2047 167 36 44 chr15 18526676 18527237 -82853284 - LTR35 LTR ERV1 0 618 1 392 166 69 97 chr15 18527663 18527808 -82852713 - LTR35-int LTR ERV1 -277 6054 5914 2727 227 42 8 chr15 18527828 18528490 -82852031 - LTR35-int LTR ERV1 -541 5790 5106 1027 128 7 0 chr15 18528504 18528652 -82851869 + MER41B LTR ERV1 305 453 -182 1437 136 0 5 chr15 18528652 18528866 -82851655 + AluSq SINE Alu 82 294 -19 608 81 50 20 chr15 18528866 18528965 -82851556 + MER41B LTR ERV1 448 549 -86 741 156 151 63 chr15 18528974 18529212 -82851309 - LTR35-int LTR ERV1 -3553 4567 4309 * 2510 214 104 46 chr15 18529199 18529489 -82851032 - LTR35-int LTR ERV1 -2242 3704 3432 2044 119 31 0 chr15 18529489 18529775 -82850746 - AluSx SINE Alu -17 295 1 2510 214 104 46 chr15 18529775 18529803 -82850718 - LTR35-int LTR ERV1 -2514 3432 3407 1527 134 25 0 chr15 18529803 18530041 -82850480 - L1PA15 LINE L1 -8 6157 5914 2510 214 104 46 chr15 18530041 18530830 -82849691 - LTR35-int LTR ERV1 -2539 3407 979 1029 133 0 0 chr15 18531000 18531143 -82849378 + AluSg/x SINE Alu 155 297 -13 2307 105 3 6 chr15 18531147 18531461 -82849060 + AluSp SINE Alu 1 313 0 2053 125 3 3 chr15 18531619 18531915 -82848606 - AluSx SINE Alu -16 296 1 1374 152 18 5 chr15 18532142 18532366 -82848155 + AluJb SINE Alu 1 227 -85 2089 93 0 0 chr15 18532373 18532641 -82847880 - AluSx SINE Alu -44 268 1 330 322 17 8 chr15 18533167 18533285 -82847236 + CT-rich Low_complexity Low_complexity 3 121 0 1874 133 0 73 chr15 18534347 18534677 -82845844 - AluSg SINE Alu -4 306 1 2071 127 3 0 chr15 18534900 18535192 -82845329 - AluSx SINE Alu -19 293 1 2153 132 0 0 chr15 18535566 18535876 -82844645 - AluSg SINE Alu 0 310 1 2198 258 96 10 chr15 18535881 18536661 -82843860 - L1ME1 LINE L1 0 6166 5320 2018 172 120 2 chr15 18536734 18537159 -82843362 - LTR53 LTR ERVL -40 479 5 608 209 16 44 chr15 18537204 18537386 -82843135 - L1MDa LINE L1 -4821 1719 1543 412 212 117 51 chr15 18537390 18537527 -82842994 + MER21B LTR ERV1 661 806 -57 2176 127 3 3 chr15 18538100 18538408 -82842113 - AluY SINE Alu -3 308 1 445 306 122 3 chr15 18540949 18541243 -82839278 - L1ME3 LINE L1 -110 6052 5724 1811 163 13 3 chr15 18541243 18541550 -82838971 - AluJo SINE Alu 0 312 3 500 265 66 24 chr15 18541656 18541822 -82838699 + MLT1G LTR MaLR 73 245 -345 2654 45 0 0 chr15 18541826 18542137 -82838384 + AluY SINE Alu 1 311 0 595 264 97 33 chr15 18542457 18542726 -82837795 - MLT1E2 LTR MaLR -341 285 1 295 275 88 0 chr15 18542757 18542848 -82837673 - L2 LINE L2 -20 3252 3154 698 102 0 10 chr15 18543186 18543328 -82837193 + AluSp/q SINE Alu 192 313 0 21 0 0 0 chr15 18543541 18543562 -82836959 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr15 18543967 18543991 -82836530 + AT_rich Low_complexity Low_complexity 1 24 0 310 305 114 38 chr15 18544088 18544324 -82836197 + L1M4 LINE L1 3620 3873 -2273 1676 226 9 6 chr15 18544351 18544700 -82835821 + MLT1A1 LTR MaLR 1 350 -15 464 111 0 67 chr15 18544861 18544951 -82835570 + L1PA8 LINE L1 6083 6166 -6 2211 160 52 5 chr15 18545608 18546015 -82834506 - MSTB LTR MaLR 0 426 1 186 284 0 0 chr15 18546264 18546345 -82834176 + A-rich Low_complexity Low_complexity 5 85 0 2380 75 0 31 chr15 18546508 18546828 -82833693 + AluY SINE Alu 1 310 -1 22 0 0 0 chr15 18546971 18546993 -82833528 + AT_rich Low_complexity Low_complexity 1 22 0 2486 59 0 7 chr15 18547066 18547369 -82833152 - AluY SINE Alu -10 301 1 292 85 6 0 chr15 18547922 18547971 -82832550 - MLT2C1 LTR ERVL -4 410 349 797 246 20 0 chr15 18548539 18548738 -82831783 + L1MC4 LINE L1 7337 7539 -503 310 227 38 8 chr15 18548738 18548870 -82831651 + GA-rich Low_complexity Low_complexity 4 139 0 613 184 101 77 chr15 18548926 18549038 -82831483 + L1MC4 LINE L1 7593 7714 -328 2394 57 0 41 chr15 18549038 18549352 -82831169 - AluY SINE Alu -10 301 1 613 184 101 77 chr15 18549352 18549446 -82831075 + L1MC4 LINE L1 7714 7804 -238 186 143 0 0 chr15 18549488 18549523 -82830998 + (TA)n Simple_repeat Simple_repeat 2 36 0 947 190 22 66 chr15 18549558 18549784 -82830737 - MER20 DNA MER1_type 0 219 4 770 306 39 11 chr15 18549825 18550184 -82830337 + L1MEc LINE L1 1601 1969 -4427 1433 195 66 10 chr15 18550219 18550521 -82830000 - L1MC1 LINE L1 0 6333 6015 801 287 10 10 chr15 18550862 18551162 -82829359 + L1MEc LINE L1 2209 2508 -3707 1279 262 51 8 chr15 18551253 18551760 -82828761 + L1MEc LINE L1 2506 3034 -3181 * 3011 116 57 116 chr15 18551740 18551869 -82828652 + L1MA5A LINE L1 5658 5793 -504 1819 128 79 0 chr15 18551869 18552135 -82828386 + AluSx SINE Alu 1 287 -25 3011 116 57 116 chr15 18552135 18552685 -82827836 + L1MA5A LINE L1 5793 6297 0 239 278 221 0 chr15 18552800 18553099 -82827422 + L1MEc LINE L1 3164 3528 -2687 299 214 14 0 chr15 18553113 18553183 -82827338 - L1 LINE L1 -2743 3403 3333 705 215 11 6 chr15 18553189 18553366 -82827155 + L1 LINE L1 2894 3071 -3075 22 0 0 0 chr15 18556774 18556796 -82823725 + GC_rich Low_complexity Low_complexity 1 22 0 1698 221 30 24 chr15 18557152 18557583 -82822938 + L1 LINE L1 3062 3498 -2648 2233 71 0 39 chr15 18557583 18557891 -82822630 + AluY SINE Alu 1 296 -15 1698 221 30 24 chr15 18557891 18557966 -82822555 + L1 LINE L1 3498 3571 -2575 1146 170 21 21 chr15 18557981 18558175 -82822346 - AluJo SINE Alu -115 197 4 662 44 11 0 chr15 18558187 18558277 -82822244 + (TA)n Simple_repeat Simple_repeat 1 91 0 2161 128 3 0 chr15 18558278 18558575 -82821946 - AluSx SINE Alu -14 298 1 2259 110 3 0 chr15 18559110 18559410 -82821111 - AluY SINE Alu -10 301 1 1730 74 4 81 chr15 18559661 18559932 -82820589 - AluY SINE Alu -2 309 60 368 143 0 0 chr15 18560557 18560613 -82819908 + AluJb SINE Alu 59 114 -188 760 205 13 0 chr15 18560628 18560784 -82819737 - AluSp SINE Alu -24 289 132 1691 172 17 7 chr15 18560788 18561085 -82819436 + LTR15 LTR ERV1 188 487 -6 733 189 18 79 chr15 18561151 18561270 -82819251 + AluJb SINE Alu 2 102 -210 1744 173 0 0 chr15 18561270 18561570 -82818951 - AluSp SINE Alu -13 300 1 733 189 18 79 chr15 18561570 18561678 -82818843 + AluJb SINE Alu 102 215 -97 257 88 0 0 chr15 18561681 18561715 -82818806 + AluJb SINE Alu 84 117 -185 691 142 0 25 chr15 18561742 18561862 -82818659 - AluSp SINE Alu -194 119 3 584 170 18 9 chr15 18561893 18562005 -82818516 + AluJb SINE Alu 2 114 -198 934 161 11 0 chr15 18562007 18562181 -82818340 - AluSp SINE Alu -16 297 122 391 141 0 0 chr15 18562316 18562380 -82818141 - AluJ/FLAM SINE Alu -238 64 1 558 239 114 10 chr15 18562380 18562581 -82817940 - L1 LINE L1 -3250 2896 2675 302 202 53 26 chr15 18562581 18562673 -82817848 + (TATATG)n Simple_repeat Simple_repeat 4 101 -19 2074 84 0 18 chr15 18562673 18562948 -82817573 + AluY SINE Alu 31 300 -11 302 202 53 26 chr15 18562948 18562969 -82817552 + (TATATG)n Simple_repeat Simple_repeat 101 120 0 2345 71 0 49 chr15 18562969 18563277 -82817244 + AluY SINE Alu 1 293 -18 320 238 133 0 chr15 18563279 18563384 -82817137 - L1 LINE L1 -3460 2686 2568 1322 106 106 0 chr15 18564354 18564562 -82815959 + MER30 DNA MER1_type 1 230 0 1653 142 92 0 chr15 18565545 18565806 -82814715 - AluJb SINE Alu -19 293 9 985 266 136 26 chr15 18566818 18567107 -82813414 - L1ME2 LINE L1 -112 6052 5796 1856 162 10 3 chr15 18567107 18567415 -82813106 - AluJb SINE Alu 0 312 3 985 266 136 26 chr15 18567415 18567624 -82812897 - L1ME2 LINE L1 -368 5796 5499 2228 125 3 0 chr15 18568163 18568475 -82812046 - AluSp SINE Alu 0 313 1 2146 136 0 0 chr15 18568495 18568797 -82811724 - AluSx SINE Alu -10 302 1 208 100 0 143 chr15 18569556 18569626 -82810895 + (GGGTG)n Simple_repeat Simple_repeat 4 63 0 257 203 51 38 chr15 18570334 18570413 -82810108 + Charlie5 DNA MER1_type 45 124 -2488 * 1079 253 3 7 chr15 18570411 18570704 -82809817 + Charlie5 DNA MER1_type 2238 2529 -83 500 152 0 13 chr15 18570704 18570783 -82809738 - AluSg/x SINE Alu -18 291 214 470 233 33 0 chr15 18570884 18571004 -82809517 + MIR3 SINE MIR 51 174 -34 533 62 0 25 chr15 18571378 18571459 -82809062 + Alu SINE Alu 232 310 -2 1606 121 159 8 chr15 18572076 18572333 -82808188 - AluSx SINE Alu -5 297 2 201 74 0 0 chr15 18572360 18572387 -82808134 + (T)n Simple_repeat Simple_repeat 1 27 0 453 306 2 4 chr15 18572761 18573285 -82807236 + CT-rich Low_complexity Low_complexity 1 523 0 421 299 0 0 chr15 18573313 18573635 -82806886 + CT-rich Low_complexity Low_complexity 1 322 0 427 294 0 22 chr15 18573704 18573888 -82806633 + CT-rich Low_complexity Low_complexity 1 180 0 486 314 1 17 chr15 18573960 18574572 -82805949 + CT-rich Low_complexity Low_complexity 1 602 0 234 279 15 0 chr15 18575180 18575248 -82805273 - MIR SINE MIR -87 121 53 1181 117 17 22 chr15 18575587 18575766 -82804755 - AluSp SINE Alu 0 313 136 529 260 157 20 chr15 18575901 18576105 -82804416 - MIR SINE MIR -10 252 21 261 83 0 0 chr15 18576299 18576335 -82804186 + (CA)n Simple_repeat Simple_repeat 2 37 0 287 261 67 25 chr15 18577726 18577845 -82802676 - L2 LINE L2 -3 3310 3187 196 282 176 0 chr15 18577842 18577927 -82802594 - MIR3 SINE MIR 0 208 109 * 351 293 64 29 chr15 18577985 18578125 -82802396 - MIR SINE MIR -70 192 48 711 92 0 0 chr15 18580620 18580707 -82799814 + AluS SINE Alu 1 87 -226 2478 77 0 0 chr15 18580822 18581120 -82799401 + AluSg SINE Alu 1 298 -12 2165 107 0 13 chr15 18581370 18581678 -82798843 - AluSc SINE Alu -5 304 1 474 253 60 53 chr15 18581768 18582053 -82798468 - L1M4 LINE L1 -2186 3960 3674 2501 63 0 3 chr15 18582059 18582360 -82798161 - AluY SINE Alu -11 300 1 201 241 35 0 chr15 18582565 18582623 -82797898 + (TA)n Simple_repeat Simple_repeat 2 61 0 926 10 0 0 chr15 18583291 18583395 -82797126 - AluYa5/8 SINE Alu -3 307 204 2493 58 0 0 chr15 18583397 18583691 -82796830 - AluY SINE Alu -17 294 1 1541 39 6 0 chr15 18583794 18583972 -82796549 - AluY SINE Alu -132 179 1 1185 15 0 0 chr15 18584010 18584143 -82796378 + AluY SINE Alu 176 308 -3 2501 39 0 0 chr15 18585517 18585823 -82794698 - AluY SINE Alu 0 306 1 659 281 35 5 chr15 18586173 18586372 -82794149 + MIR SINE MIR 10 214 -48 1518 92 5 0 chr15 18586736 18586943 -82793578 - L1MA3 LINE L1 0 6305 6098 2374 69 0 13 chr15 18587180 18587486 -82793035 - AluY SINE Alu -9 302 1 27 49 0 0 chr15 18587953 18587994 -82792527 + AT_rich Low_complexity Low_complexity 1 41 0 2427 66 0 0 chr15 18588266 18588569 -82791952 - AluY SINE Alu -8 303 1 237 339 16 8 chr15 18589034 18589161 -82791360 - L2 LINE L2 -2375 939 812 211 262 262 21 chr15 18589385 18589530 -82790991 + MIR SINE MIR 53 232 -30 1752 115 11 11 chr15 18592177 18592437 -82788084 - THE1C LTR MaLR 0 375 116 26 0 0 0 chr15 18592446 18592472 -82788049 + AT_rich Low_complexity Low_complexity 1 26 0 1052 186 67 0 chr15 18592497 18592690 -82787831 - MER2 DNA MER2_type -139 206 1 2614 49 0 7 chr15 18594281 18594586 -82785935 - AluY SINE Alu -6 305 3 2218 66 3 24 chr15 18594795 18595112 -82785409 - AluY SINE Alu 0 311 1 446 314 115 57 chr15 18595393 18595951 -82784570 + L2 LINE L2 1602 2191 -1123 647 200 123 0 chr15 18596049 18596204 -82784317 + MER58B DNA MER1_type 167 340 -1 302 254 109 52 chr15 18596769 18596962 -82783559 - L1MC4a LINE L1 -1932 5876 5673 28 0 0 0 chr15 18597246 18597274 -82783247 + AT_rich Low_complexity Low_complexity 1 28 0 1914 257 89 6 chr15 18597959 18598590 -82781931 + L1 LINE L1 2046 2726 -3420 662 212 155 21 chr15 18598630 18598745 -82781776 + AluJb SINE Alu 2 100 -212 1521 139 56 21 chr15 18598745 18598913 -82781608 - AluSp SINE Alu -5 298 114 270 0 0 0 chr15 18598913 18598943 -82781578 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1521 139 56 21 chr15 18598943 18599061 -82781460 - AluSp SINE Alu -189 114 2 662 212 155 21 chr15 18599061 18599138 -82781383 + AluJb SINE Alu 100 220 -92 1292 142 88 61 chr15 18599169 18599465 -82781056 - AluSp SINE Alu -9 304 1 904 260 94 76 chr15 18600185 18600408 -82780113 - L1ME3A LINE L1 -6 6164 5946 2160 96 3 7 chr15 18600408 18600701 -82779820 - AluSc SINE Alu -17 292 1 904 260 94 76 chr15 18600701 18601050 -82779471 - L1ME3A LINE L1 -224 5946 5576 2482 48 3 35 chr15 18601050 18601360 -82779161 + AluY SINE Alu 1 300 -11 904 260 94 76 chr15 18601360 18601470 -82779051 - L1ME3A LINE L1 -594 5576 5469 1845 234 68 12 chr15 18601475 18601958 -82778563 - MLT2B1 LTR ERVL -10 510 1 2813 233 46 25 chr15 18601961 18602856 -82777665 - ERVL LTR ERVL -3 5651 4773 1562 226 122 88 chr15 18602891 18603611 -82776910 - LTR1B LTR ERV1 -81 745 1 18794 201 34 18 chr15 18603611 18605711 -82774810 - ERVL LTR ERVL -949 4815 2623 1225 167 14 14 chr15 18605711 18605921 -82774600 + MER6B DNA MER2_type 1 210 0 18794 201 34 18 chr15 18605921 18607578 -82772943 - ERVL LTR ERVL -3141 2623 995 367 214 51 31 chr15 18607579 18607645 -82772876 + MER4-int LTR ERV1 351 421 -7699 314 61 20 0 chr15 18607645 18607694 -82772827 + (TG)n Simple_repeat Simple_repeat 1 50 0 367 214 51 31 chr15 18607694 18607725 -82772796 + MER4-int LTR ERV1 421 450 -7670 6925 153 58 35 chr15 18607798 18609179 -82771342 + MER4-int LTR ERV1 451 1863 -6257 815 182 25 106 chr15 18609194 18609384 -82771137 + MER4-int LTR ERV1 2346 2550 -4048 2433 64 0 0 chr15 18609384 18609681 -82770840 - AluY SINE Alu -14 297 1 815 182 25 106 chr15 18609681 18609859 -82770662 + MER4-int LTR ERV1 2550 3710 -2888 1893 150 40 52 chr15 18609869 18610216 -82770305 + MER61A LTR ERV1 1 343 0 263 245 41 31 chr15 18610218 18610316 -82770205 + MER61A-int LTR ERV1 3 101 -5116 1409 118 78 108 chr15 18610536 18610694 -82769827 + MER61A-int LTR ERV1 246 390 -4827 2391 76 0 19 chr15 18610694 18611011 -82769510 - AluY SINE Alu 0 311 1 1409 118 78 108 chr15 18611011 18611184 -82769337 + MER61A-int LTR ERV1 390 567 -4650 * 4325 88 13 8 chr15 18611164 18611788 -82768733 + MER61A-int LTR ERV1 1396 2022 -3195 * 7842 72 18 4 chr15 18611777 18612804 -82767717 + MER61A-int LTR ERV1 2948 3988 -1229 1710 227 25 19 chr15 18612804 18613289 -82767232 - L1 LINE L1 -2441 3705 3218 2762 188 69 21 chr15 18613289 18613368 -82767153 + MER4-int LTR ERV1 4962 5036 -3084 2344 87 0 7 chr15 18613368 18613667 -82766854 - AluSg SINE Alu -13 297 1 2762 188 69 21 chr15 18613667 18614214 -82766307 + MER4-int LTR ERV1 5036 5618 -2502 2559 71 0 0 chr15 18614223 18614534 -82765987 - AluY SINE Alu 0 311 1 3404 175 38 12 chr15 18614541 18615140 -82765381 + MER4-int LTR ERV1 3116 3730 -3028 256 184 0 0 chr15 18615134 18615183 -82765338 + MER4-int LTR ERV1 1114 1162 -5436 * 279 233 27 0 chr15 18615184 18615257 -82765264 + (TA)n Simple_repeat Simple_repeat 1 75 0 4535 157 104 68 chr15 18615262 18616242 -82764279 + MER4-int LTR ERV1 6631 7645 -475 235 143 0 71 chr15 18616242 18616284 -82764237 + LOR1b LTR ERV1 395 433 -28 1135 277 58 27 chr15 18616285 18616461 -82764060 - HERVL-B1 LTR ERVL -5185 469 300 1859 149 5 115 chr15 18616461 18616851 -82763670 - MER7A DNA MER2_type -1 345 1 1135 277 58 27 chr15 18616851 18617125 -82763396 - HERVL-B1 LTR ERVL -5354 300 5 231 118 0 0 chr15 18617125 18617159 -82763362 - MLT2B1 LTR ERVL -6 509 476 571 66 0 22 chr15 18617159 18617250 -82763271 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 967 252 110 3 chr15 18617252 18617569 -82762952 - MLT2B1 LTR ERVL -169 351 1 383 276 119 4 chr15 18617572 18617949 -82762572 - L1ME LINE L1 -688 5474 5043 1578 239 76 62 chr15 18618202 18618541 -82761980 + L1MEc LINE L1 2172 2505 -3710 2938 32 3 12 chr15 18618541 18618880 -82761641 - L1PA4 LINE L1 0 6155 5820 1578 239 76 62 chr15 18618880 18619299 -82761222 + L1MEc LINE L1 2505 2894 -3321 21 36 0 0 chr15 18620142 18620170 -82760351 + AT_rich Low_complexity Low_complexity 1 28 0 43 56 0 0 chr15 18620627 18620698 -82759823 + AT_rich Low_complexity Low_complexity 1 71 0 1306 208 0 4 chr15 18621439 18621684 -82758837 - AluJo SINE Alu -68 244 1 222 37 0 0 chr15 18621724 18621751 -82758770 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1657 150 7 7 chr15 18621754 18622034 -82758487 - AluSx SINE Alu -32 280 1 433 318 112 52 chr15 18622258 18622544 -82757977 - L1ME4a LINE L1 -198 5923 5621 413 191 75 125 chr15 18623201 18623301 -82757220 - L1MC5 LINE L1 -49 7912 7809 2039 135 0 6 chr15 18623301 18623613 -82756908 - AluSq SINE Alu -3 310 1 413 191 75 125 chr15 18623613 18623832 -82756689 - L1MC5 LINE L1 -152 7809 7609 1298 173 12 80 chr15 18624453 18624665 -82755856 - AluJb SINE Alu 0 302 118 1568 149 7 23 chr15 18624665 18624973 -82755548 + AluSp SINE Alu 1 303 -10 1298 173 12 80 chr15 18624973 18625084 -82755437 - AluJb SINE Alu -184 118 1 1608 131 13 33 chr15 18625111 18625417 -82755104 + AluSp SINE Alu 1 300 -13 577 179 8 8 chr15 18625424 18625541 -82754980 - FLAM_C SINE Alu -16 117 1 836 105 8 8 chr15 18625569 18625702 -82754819 + AluSp SINE Alu 1 133 -180 1534 157 9 46 chr15 18625708 18626032 -82754489 + AluSp SINE Alu 1 312 -1 392 125 16 0 chr15 18626034 18626098 -82754423 - AluJb SINE Alu -186 116 52 1514 157 3 35 chr15 18626124 18626437 -82754084 + AluSp SINE Alu 1 303 -10 545 207 9 9 chr15 18626438 18626554 -82753967 - AluJb SINE Alu -195 117 2 1428 183 29 7 chr15 18626620 18626893 -82753628 - LTR15 LTR ERV1 -6 487 209 27 0 0 0 chr15 18627628 18627655 -82752866 + AT_rich Low_complexity Low_complexity 1 27 0 208 233 11 111 chr15 18628229 18628319 -82752202 - L2 LINE L2 -2 3270 3190 1399 180 36 46 chr15 18630038 18630344 -82750177 + AluJo SINE Alu 1 303 -9 24 32 0 0 chr15 18630610 18630641 -82749880 + AT_rich Low_complexity Low_complexity 1 31 0 200 206 0 0 chr15 18630841 18630875 -82749646 + polypurine Low_complexity Low_complexity 3 36 0 2062 116 0 0 chr15 18631539 18631833 -82748688 + AluSq SINE Alu 2 295 -18 228 313 102 16 chr15 18631992 18632120 -82748401 - MIR SINE MIR -13 249 111 1581 100 129 30 chr15 18632294 18632565 -82747956 + AluSg SINE Alu 1 298 -12 3795 212 36 42 chr15 18634155 18635133 -82745388 - L1ME1 LINE L1 -5 6161 5198 2233 85 0 7 chr15 18635133 18635439 -82745082 - AluSg SINE Alu -6 304 1 3795 212 36 42 chr15 18635439 18635690 -82744831 - L1ME1 LINE L1 -968 5198 4947 365 100 0 17 chr15 18635718 18635778 -82744743 + (TCCC)n Simple_repeat Simple_repeat 3 61 0 1708 147 20 14 chr15 18635778 18636070 -82744451 - AluJo SINE Alu -18 294 1 459 255 57 14 chr15 18637890 18638031 -82742490 + MIR SINE MIR 50 196 -66 315 49 0 0 chr15 18639167 18639208 -82741313 + (TG)n Simple_repeat Simple_repeat 1 41 0 600 137 0 20 chr15 18639728 18639830 -82740691 + FLAM_A SINE Alu 43 142 0 1738 163 17 0 chr15 18640160 18640460 -82740061 + AluJb SINE Alu 1 305 -7 264 217 87 0 chr15 18640460 18640529 -82739992 + MIR SINE MIR 162 236 -26 1714 149 11 3 chr15 18640706 18640988 -82739533 + AluJb SINE Alu 9 292 -20 225 228 0 35 chr15 18641387 18641444 -82739077 + Tigger3(Golem) DNA MER2_type 49 103 -2926 * 2092 138 233 2 chr15 18641439 18641873 -82738648 + Tigger3(Golem) DNA MER2_type 2443 2976 -53 796 176 85 0 chr15 18641875 18642028 -82738493 + FRAM SINE Alu 1 166 -10 370 186 0 0 chr15 18642064 18642123 -82738398 + Tigger3(Golem) DNA MER2_type 2970 3028 -1 1839 155 3 3 chr15 18642337 18642640 -82737881 - AluJo SINE Alu -7 305 3 1563 208 0 0 chr15 18643437 18643721 -82736800 + AluJb SINE Alu 1 284 -28 206 289 0 0 chr15 18643916 18643961 -82736560 - MIR SINE MIR -25 237 193 1537 175 29 4 chr15 18644114 18644388 -82736133 + AluJo SINE Alu 1 281 -31 2040 131 13 0 chr15 18644455 18644761 -82735760 - AluSx SINE Alu 0 312 3 1843 131 0 54 chr15 18645007 18645321 -82735200 - AluJo SINE Alu -15 297 1 1142 298 90 23 chr15 18645743 18646025 -82734496 - MLT1K LTR MaLR -31 557 295 1771 122 0 57 chr15 18646025 18646321 -82734200 + AluSx SINE Alu 1 279 -33 1142 298 90 23 chr15 18646321 18646559 -82733962 - MLT1K LTR MaLR -293 295 2 1706 218 99 7 chr15 18646747 18647170 -82733351 + MLT1C LTR MaLR 6 467 0 330 287 11 0 chr15 18647304 18647398 -82733123 + MER58 DNA MER1_type 1 95 -291 518 202 0 48 chr15 18648359 18648483 -82732038 - L2 LINE L2 -5 3308 3191 362 311 0 0 chr15 18648485 18648575 -82731946 + MER58 DNA MER1_type 1 90 -251 2254 83 3 10 chr15 18648604 18648918 -82731603 + AluSq SINE Alu 1 312 -1 485 157 372 8 chr15 18648920 18649041 -82731480 + MER5A DNA MER1_type 17 181 -8 956 160 6 12 chr15 18649041 18649210 -82731311 + L1PB4 LINE L1 5830 5997 -159 1894 153 0 3 chr15 18649268 18649562 -82730959 + AluJb SINE Alu 2 294 -18 2139 77 11 0 chr15 18649564 18649850 -82730671 + AluSx SINE Alu 1 289 -23 598 239 0 0 chr15 18649876 18650006 -82730515 + L1PB4 LINE L1 6024 6153 -3 237 283 0 0 chr15 18650048 18650101 -82730420 + L2 LINE L2 3210 3262 -10 1722 202 97 36 chr15 18650101 18650279 -82730242 + MLT1D LTR MaLR 1 167 -338 1992 101 35 3 chr15 18650279 18650567 -82729954 - AluSx SINE Alu -15 297 1 1722 202 97 36 chr15 18650567 18650864 -82729657 + MLT1D LTR MaLR 167 505 0 413 306 112 0 chr15 18650899 18651033 -82729488 + MIR SINE MIR 61 209 -53 488 286 0 0 chr15 18651094 18651206 -82729315 + MIR SINE MIR 81 192 -70 1955 107 32 0 chr15 18651432 18651713 -82728808 - AluSx SINE Alu -22 290 1 2342 90 0 3 chr15 18652640 18652952 -82727569 - AluSx SINE Alu -1 311 1 192 318 153 0 chr15 18653042 18653127 -82727394 + L2 LINE L2 3175 3272 0 380 269 19 31 chr15 18653246 18653423 -82727098 - MIR3 SINE MIR -68 140 10 430 311 33 7 chr15 18653871 18654022 -82726499 - MIR SINE MIR -74 188 34 304 337 20 0 chr15 18654482 18654583 -82725938 - L2 LINE L2 -20 3293 3191 1024 192 56 14 chr15 18654585 18654750 -82725771 - MER58A DNA MER1_type -2196 224 47 2309 77 7 0 chr15 18654750 18655047 -82725474 + AluY SINE Alu 1 299 -12 1024 192 56 14 chr15 18655047 18655095 -82725426 - MER58A DNA MER1_type -2373 47 2 200 233 0 83 chr15 18655350 18655410 -82725111 + L2 LINE L2 3217 3271 -1 187 222 0 0 chr15 18655629 18655665 -82724856 + MIR SINE MIR 114 149 -59 2303 71 0 3 chr15 18655795 18656089 -82724432 + AluSc SINE Alu 1 293 -16 230 295 57 9 chr15 18656098 18656203 -82724318 - MIR SINE MIR -113 149 40 211 339 83 0 chr15 18656529 18656638 -82723883 + MIR3 SINE MIR 45 162 -46 2245 217 64 56 chr15 18656671 18656856 -82723665 + MER82 DNA MER2_type 37 219 -434 1991 121 10 0 chr15 18656856 18657146 -82723375 + AluSx SINE Alu 1 293 -19 2420 77 0 3 chr15 18657148 18657460 -82723061 + AluY SINE Alu 1 311 0 2245 217 64 56 chr15 18657460 18657880 -82722641 + MER82 DNA MER2_type 219 650 -3 1946 148 0 0 chr15 18657971 18658262 -82722259 - AluSq SINE Alu -17 296 6 661 149 174 8 chr15 18658266 18658387 -82722134 - AluJo SINE Alu -170 142 2 943 349 3 103 chr15 18658515 18658845 -82721676 - AluSp SINE Alu -6 297 1 332 167 15 0 chr15 18658870 18658936 -82721585 + AluJb SINE Alu 51 117 -185 1470 169 19 19 chr15 18658942 18659255 -82721266 - AluSp SINE Alu 0 313 1 844 85 15 0 chr15 18659261 18659391 -82721130 - AluSp SINE Alu -180 133 2 517 205 8 8 chr15 18659420 18659537 -82720984 + FLAM_C SINE Alu 1 117 -16 1567 141 10 61 chr15 18659548 18659861 -82720660 - AluSp SINE Alu -16 297 1 1308 172 12 86 chr15 18659888 18659999 -82720522 + AluJb SINE Alu 1 119 -183 1371 163 42 0 chr15 18659999 18660161 -82720360 - AluSp SINE Alu -18 295 114 396 0 0 0 chr15 18660161 18660205 -82720316 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1371 163 42 0 chr15 18660205 18660325 -82720196 - AluSp SINE Alu -199 114 1 1308 172 12 86 chr15 18660325 18660539 -82719982 + AluJb SINE Alu 119 302 0 185 250 143 0 chr15 18660794 18660850 -82719671 - MIR SINE MIR -93 169 106 314 216 77 115 chr15 18661115 18661385 -82719136 + L1MC5 LINE L1 7563 7842 -119 2061 110 0 0 chr15 18661385 18661667 -82718854 + AluSq SINE Alu 1 282 -31 212 77 26 0 chr15 18661671 18661710 -82718811 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 314 216 77 115 chr15 18661710 18661800 -82718721 + L1MC5 LINE L1 7845 7914 -47 1842 149 10 0 chr15 18662989 18663290 -82717231 + AluSx SINE Alu 1 304 -8 1434 191 0 0 chr15 18663333 18663579 -82716942 + AluJo SINE Alu 1 246 -66 25 0 0 0 chr15 18664149 18664174 -82716347 + AT_rich Low_complexity Low_complexity 1 25 0 943 161 0 0 chr15 18669104 18669259 -82711262 - 7SLRNA srpRNA srpRNA -71 249 95 371 257 175 6 chr15 18670014 18670190 -82710331 - MIR SINE MIR -6 256 45 1886 130 0 86 chr15 18670203 18670527 -82709994 - AluSx SINE Alu -15 297 2 194 241 22 0 chr15 18671069 18671115 -82709406 - MIR SINE MIR -58 150 103 261 83 0 0 chr15 18671444 18671480 -82709041 + (A)n Simple_repeat Simple_repeat 1 36 0 228 216 39 0 chr15 18671614 18671665 -82708856 - MIR SINE MIR -61 147 95 514 229 141 40 chr15 18672640 18672850 -82707671 - MIR SINE MIR -10 252 16 183 253 120 13 chr15 18673132 18673207 -82707314 - MIR SINE MIR -106 102 20 350 288 76 8 chr15 18674450 18674568 -82705953 - L2 LINE L2 -3 3310 3185 300 314 139 7 chr15 18674587 18674724 -82705797 - MIR3 SINE MIR -23 185 31 388 271 57 62 chr15 18675666 18675858 -82704663 - MIR SINE MIR -70 192 2 211 259 0 19 chr15 18678033 18678087 -82702434 + (TG)n Simple_repeat Simple_repeat 2 54 0 2150 113 0 0 chr15 18678396 18678705 -82701816 + AluY SINE Alu 1 309 0 383 284 121 75 chr15 18678710 18678949 -82701572 - L1MEd LINE L1 -4939 1180 931 870 201 53 0 chr15 18678949 18679118 -82701403 - AluJb SINE Alu -2 310 133 277 214 0 0 chr15 18679129 18679185 -82701336 - MER3 DNA MER1_type -153 56 1 2217 128 3 3 chr15 18679275 18679587 -82700934 + AluJb SINE Alu 1 312 0 471 148 0 0 chr15 18680060 18680148 -82700373 + (TAGA)n Simple_repeat Simple_repeat 1 88 0 211 194 0 0 chr15 18680148 18680184 -82700337 + (CAGAGA)n Simple_repeat Simple_repeat 5 40 0 821 224 30 56 chr15 18680357 18680661 -82699860 + L1MA9 LINE L1 5987 6282 -30 323 275 25 0 chr15 18680825 18680905 -82699616 + L1MC4 LINE L1 6609 6690 -1352 1644 174 20 40 chr15 18680916 18681214 -82699307 + AluJo SINE Alu 1 292 -20 285 238 16 0 chr15 18681443 18681506 -82699015 + MIR SINE MIR 87 150 -112 1599 157 68 14 chr15 18681733 18682013 -82698508 + AluJb SINE Alu 1 295 -17 207 0 0 0 chr15 18682062 18682085 -82698436 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 746 176 8 0 chr15 18682091 18682210 -82698311 - FLAM_C SINE Alu -13 120 1 546 297 44 27 chr15 18682222 18682443 -82698078 - L1M4 LINE L1 -1468 4678 4449 1417 200 28 92 chr15 18682443 18682833 -82697688 - MLT1A1 LTR MaLR 0 365 1 546 297 44 27 chr15 18682833 18682907 -82697614 - L1M4 LINE L1 -1697 4449 4378 910 186 55 90 chr15 18682910 18683222 -82697299 - AluY SINE Alu 0 301 1 1994 146 7 13 chr15 18683759 18684068 -82696453 + AluJb SINE Alu 1 307 -5 201 345 0 0 chr15 18684287 18684342 -82696179 + MIR SINE MIR 21 75 -133 414 342 43 39 chr15 18684857 18685091 -82695430 - L1MC4 LINE L1 -1340 6702 6468 307 300 100 0 chr15 18685085 18685195 -82695326 - L1MC4 LINE L1 -1339 6703 6583 * 367 186 21 0 chr15 18685195 18685292 -82695229 + (CATATA)n Simple_repeat Simple_repeat 5 103 0 1389 122 77 12 chr15 18685318 18685565 -82694956 + L1PA10 LINE L1 5904 6166 -2 337 254 152 57 chr15 18686579 18687148 -82693373 - L1M4 LINE L1 -3311 2835 2196 2126 98 20 23 chr15 18687148 18687453 -82693068 - AluSg SINE Alu 0 310 7 337 254 152 57 chr15 18687453 18687530 -82692991 - L1M4 LINE L1 -3950 2196 2128 1288 74 11 32 chr15 18687819 18688031 -82692490 + AluSg/x SINE Alu 115 312 0 741 241 87 14 chr15 18688058 18688148 -82692373 - AluJo SINE Alu -90 222 140 1967 120 0 20 chr15 18688148 18688447 -82692074 + AluSq SINE Alu 17 309 -4 741 241 87 14 chr15 18688447 18688563 -82691958 - AluJo SINE Alu -172 140 1 1619 133 13 33 chr15 18688591 18688893 -82691628 + AluSp SINE Alu 1 296 -17 584 162 8 17 chr15 18688904 18689021 -82691500 - FLAM_C SINE Alu -26 117 2 1922 96 10 83 chr15 18689029 18689342 -82691179 + AluSx SINE Alu 22 311 -1 1580 167 3 24 chr15 18689354 18689647 -82690874 + AluSp SINE Alu 7 293 -20 243 0 0 0 chr15 18689647 18689674 -82690847 + (GA)n Simple_repeat Simple_repeat 2 28 0 776 220 13 48 chr15 18689701 18689814 -82690707 - AluJo SINE Alu -92 220 117 1790 138 0 47 chr15 18689814 18690132 -82690389 + AluSp SINE Alu 1 303 -10 776 220 13 48 chr15 18690132 18690245 -82690276 - AluJo SINE Alu -195 117 2 1752 183 49 16 chr15 18690249 18690637 -82689884 - LTR15 LTR ERV1 -92 401 1 229 269 60 0 chr15 18691255 18691322 -82689199 + L2 LINE L2 2204 2274 -1040 898 317 166 9 chr15 18691498 18692112 -82688409 + L2 LINE L2 2353 3062 -251 2331 74 3 7 chr15 18692849 18693148 -82687373 + AluY SINE Alu 1 298 -13 243 221 130 0 chr15 18693165 18693242 -82687279 + L1M4 LINE L1 4750 4836 -1310 624 293 25 37 chr15 18693739 18694060 -82686461 - L1MC4 LINE L1 -1 8041 7725 714 192 103 0 chr15 18694290 18694446 -82686075 - MER5A DNA MER1_type -2 187 16 2145 117 3 0 chr15 18694637 18694976 -82685545 + AluSx SINE Alu 1 340 0 330 269 52 28 chr15 18695632 18695893 -82684628 - L1P5 LINE L1 -711 5443 5174 1463 186 37 15 chr15 18696002 18696271 -82684250 - AluJo SINE Alu -37 275 1 793 151 68 14 chr15 18697016 18697162 -82683359 - MER5A DNA MER1_type -33 156 3 603 51 0 0 chr15 18697548 18697627 -82682894 + (TG)n Simple_repeat Simple_repeat 2 80 0 2062 125 3 10 chr15 18697628 18697916 -82682605 - AluSx SINE Alu -26 286 1 222 250 0 0 chr15 18698441 18698529 -82681992 + C-rich Low_complexity Low_complexity 2 89 0 410 301 66 0 chr15 18700468 18700604 -82679917 + MIR SINE MIR 48 192 -70 279 254 105 26 chr15 18700741 18700855 -82679666 + L2 LINE L2 3188 3310 -3 528 234 188 20 chr15 18702456 18702653 -82677868 + MIR SINE MIR 23 252 -10 2153 133 10 0 chr15 18702788 18703097 -82677424 + AluSp SINE Alu 1 312 -1 226 317 195 0 chr15 18703456 18703579 -82676942 + MIR3 SINE MIR 53 199 -9 186 340 113 0 chr15 18703921 18704027 -82676494 + MER5A DNA MER1_type 24 141 -48 2327 67 0 3 chr15 18704063 18704385 -82676136 - AluY SINE Alu 0 321 1 533 298 1 23 chr15 18704588 18705692 -82674829 + GA-rich Low_complexity Low_complexity 1 1079 0 27 0 0 0 chr15 18706498 18706525 -82673996 + AT_rich Low_complexity Low_complexity 1 27 0 1980 95 106 0 chr15 18706538 18706802 -82673719 + AluSx SINE Alu 1 292 -20 1770 149 49 14 chr15 18707430 18707718 -82672803 - AluSx SINE Alu -14 298 1 466 244 47 17 chr15 18707738 18707910 -82672611 - L1ME2 LINE L1 -2 6162 5986 289 309 59 59 chr15 18709061 18709265 -82671256 + MLT1L LTR MaLR 5 208 -407 416 256 64 0 chr15 18711479 18711604 -82668917 - MIR3 SINE MIR -34 174 42 379 298 159 7 chr15 18712449 18712600 -82667921 - MER5A DNA MER1_type -15 174 1 288 239 119 15 chr15 18712631 18712765 -82667756 - MIR SINE MIR -94 168 21 2232 129 3 0 chr15 18714286 18714595 -82665926 + AluSx SINE Alu 1 310 -2 358 78 0 0 chr15 18714810 18714861 -82665660 + Alu SINE Alu 2 52 -248 23 33 0 0 chr15 18715353 18715383 -82665138 + AT_rich Low_complexity Low_complexity 1 30 0 2047 141 0 3 chr15 18716068 18716351 -82664170 + AluSx SINE Alu 1 282 -30 189 0 0 0 chr15 18716394 18716415 -82664106 + (A)n Simple_repeat Simple_repeat 1 21 0 1015 227 3 43 chr15 18716419 18716459 -82664062 - Charlie5 DNA MER1_type -69 2555 2515 1983 123 3 69 chr15 18716459 18716777 -82663744 + AluSx SINE Alu 1 297 -15 1015 227 3 43 chr15 18716777 18717084 -82663437 - Charlie5 DNA MER1_type -109 2515 2222 254 115 0 138 chr15 18717854 18717941 -82662580 + (CACCC)n Simple_repeat Simple_repeat 4 78 0 2284 124 0 0 chr15 18718703 18719010 -82661511 + AluSx SINE Alu 1 307 -5 2181 139 3 0 chr15 18719033 18719342 -82661179 + AluSp SINE Alu 1 310 -3 766 288 105 24 chr15 18719877 18720087 -82660434 + L1ME2 LINE L1 5502 5694 -470 1842 161 13 3 chr15 18720087 18720392 -82660129 + AluJo SINE Alu 3 310 -2 766 288 105 24 chr15 18720392 18720601 -82659920 + L1ME2 LINE L1 5694 5955 -209 1662 141 92 0 chr15 18721692 18721954 -82658567 + AluJb SINE Alu 9 294 -18 1322 106 106 0 chr15 18722937 18723145 -82657376 - MER30 DNA MER1_type 0 230 1 320 238 133 0 chr15 18724115 18724220 -82656301 + L1M4 LINE L1 2568 2686 -3460 2345 71 0 49 chr15 18724222 18724530 -82655991 - AluY SINE Alu -18 293 1 318 193 53 26 chr15 18724530 18724551 -82655970 + (CATATA)n Simple_repeat Simple_repeat 4 23 -97 2058 87 0 18 chr15 18724551 18724826 -82655695 - AluY SINE Alu -11 300 31 318 193 53 26 chr15 18724826 18724918 -82655603 + (CATATA)n Simple_repeat Simple_repeat 23 120 0 2127 225 56 56 chr15 18724918 18725119 -82655402 + L1M4 LINE L1 2675 2875 -3271 2014 122 0 10 chr15 18725119 18725414 -82655107 + AluSq SINE Alu 1 292 -21 2127 225 56 56 chr15 18725414 18726033 -82654488 + L1M4 LINE L1 2870 3496 -2646 1671 183 31 0 chr15 18726033 18726322 -82654199 - AluJb SINE Alu -14 298 1 740 252 141 27 chr15 18726322 18726655 -82653866 - L1ME3 LINE L1 -107 6055 5685 288 196 0 0 chr15 18727191 18727237 -82653284 - AluY SINE Alu -253 46 1 2090 112 10 0 chr15 18727266 18727562 -82652959 + AluSq SINE Alu 6 304 -9 1703 159 4 0 chr15 18727590 18727860 -82652661 - AluJb SINE Alu -9 303 33 344 294 12 28 chr15 18728070 18728286 -82652235 + CT-rich Low_complexity Low_complexity 1 212 0 265 366 7 18 chr15 18728479 18728739 -82651782 + C-rich Low_complexity Low_complexity 1 257 0 2472 47 7 0 chr15 18729419 18729716 -82650805 + AluY SINE Alu 1 299 -12 976 253 25 8 chr15 18729751 18729988 -82650533 + MLT1H1 LTR MaLR 291 531 -24 225 94 0 0 chr15 18729988 18730020 -82650501 + (T)n Simple_repeat Simple_repeat 1 32 0 931 108 7 0 chr15 18730120 18730259 -82650262 - L1P4 LINE L1 -676 5485 5346 1071 138 0 6 chr15 18730259 18730432 -82650089 + L1PA13 LINE L1 5991 6163 0 693 276 22 41 chr15 18730438 18730740 -82649781 + L2 LINE L2 2736 3036 -277 1379 304 55 21 chr15 18730761 18731002 -82649519 + MLT1H1 LTR MaLR 1 233 -322 2462 51 7 0 chr15 18731002 18731297 -82649224 + AluY SINE Alu 1 297 -14 1379 304 55 21 chr15 18731297 18731569 -82648952 + MLT1H1 LTR MaLR 233 531 -24 22 0 0 0 chr15 18731580 18731602 -82648919 + AT_rich Low_complexity Low_complexity 1 22 0 2247 72 0 17 chr15 18731714 18732004 -82648517 + AluY SINE Alu 18 302 -9 276 105 0 0 chr15 18732009 18732047 -82648474 - tRNA-Phe-TTC tRNA tRNA -38 38 1 364 309 134 28 chr15 18732871 18732953 -82647568 + L1MC4a LINE L1 5856 5928 -1880 2155 118 3 3 chr15 18732953 18733266 -82647255 + AluSq SINE Alu 1 313 0 364 309 134 28 chr15 18733266 18733474 -82647047 + L1MC4a LINE L1 5928 6177 -1631 6465 175 45 23 chr15 18733769 18734540 -82645981 - L1 LINE L1 -1984 4162 3345 2031 148 0 7 chr15 18734540 18734845 -82645676 - AluSx SINE Alu -9 303 1 6465 175 45 23 chr15 18734845 18735441 -82645080 - L1 LINE L1 -2801 3345 2764 * 7666 153 20 8 chr15 18735433 18736754 -82643767 - L1 LINE L1 -1158 4988 3652 1838 213 38 27 chr15 18736754 18737233 -82643288 - L1 LINE L1 -3384 2762 2279 1147 205 139 13 chr15 18737247 18737550 -82642971 + MLT1E1 LTR MaLR 305 645 -9 737 191 8 15 chr15 18737742 18737873 -82642648 + AluJo SINE Alu 12 141 -171 1784 150 18 3 chr15 18737875 18738161 -82642360 + AluJb SINE Alu 1 290 -22 52 0 0 0 chr15 18738161 18738213 -82642308 + AT_rich Low_complexity Low_complexity 1 52 0 2230 113 3 3 chr15 18738506 18738808 -82641713 + AluY SINE Alu 1 302 -9 806 160 0 0 chr15 18738916 18739041 -82641480 + FLAM_C SINE Alu 1 125 -18 2051 98 61 0 chr15 18739340 18739617 -82640904 - AluSc SINE Alu -15 294 1 2229 106 7 0 chr15 18739648 18739940 -82640581 - AluSx SINE Alu -18 294 1 810 260 56 86 chr15 18740048 18740479 -82640042 + L1MD1 LINE L1 5825 6242 0 2293 78 17 3 chr15 18740898 18741193 -82639328 + AluSx SINE Alu 1 299 -13 2032 100 21 21 chr15 18741862 18742152 -82638369 + AluSx SINE Alu 1 290 -22 2161 105 17 3 chr15 18742667 18742962 -82637559 - AluSq SINE Alu -14 299 1 191 188 21 0 chr15 18744145 18744193 -82636328 + GA-rich Low_complexity Low_complexity 1 49 0 35 88 0 0 chr15 18744518 18744609 -82635912 + GC_rich Low_complexity Low_complexity 1 91 0 25 31 0 0 chr15 18744638 18744670 -82635851 + GC_rich Low_complexity Low_complexity 1 32 0 1633 133 48 44 chr15 18745266 18745560 -82634961 + AluJo SINE Alu 1 295 -17 2112 93 0 0 chr15 18745564 18745832 -82634689 + AluSx SINE Alu 1 268 -44 1451 152 13 0 chr15 18745839 18746063 -82634458 - AluJb SINE Alu -85 227 1 2189 117 3 3 chr15 18746286 18746593 -82633928 + AluSp SINE Alu 1 307 -6 267 158 0 0 chr15 18746667 18746705 -82633816 + Alu SINE Alu 6 43 -260 1379 167 40 0 chr15 18746705 18746927 -82633594 - AluJo SINE Alu -81 231 1 1622 240 112 14 chr15 18746927 18747443 -82633078 - L1ME3 LINE L1 -107 6055 5489 1827 108 35 0 chr15 18748572 18748830 -82631691 - AluSq SINE Alu -11 302 36 1484 61 0 0 chr15 18748835 18749015 -82631506 - AluY SINE Alu -13 298 119 1110 92 7 7 chr15 18749119 18749271 -82631250 - AluY SINE Alu -159 152 1 2310 78 0 0 chr15 18749398 18749702 -82630819 + AluY SINE Alu 1 304 0 6915 124 25 43 chr15 18750162 18750195 -82630326 + THE1B-int LTR MaLR 458 490 -1090 2292 68 23 16 chr15 18750195 18750503 -82630018 + AluY SINE Alu 1 310 -1 6915 124 25 43 chr15 18750503 18751612 -82628909 + THE1B-int LTR MaLR 490 1580 0 2579 109 8 16 chr15 18751612 18751979 -82628542 + THE1B LTR MaLR 1 364 0 49 71 0 0 chr15 18752970 18753068 -82627453 + AT_rich Low_complexity Low_complexity 1 98 0 564 258 40 36 chr15 18753218 18753443 -82627078 + L2 LINE L2 2511 2736 -578 2338 110 33 0 chr15 18753453 18753789 -82626732 - L1PA13 LINE L1 -189 5974 5628 2649 16 3 0 chr15 18753889 18754306 -82626215 + L1P1 LINE L1 5144 5561 -594 * 6373 169 47 23 chr15 18754302 18755038 -82625483 - L1 LINE L1 -2019 4127 3343 2164 135 0 3 chr15 18755038 18755342 -82625179 - AluSx SINE Alu -9 303 1 6373 169 47 23 chr15 18755342 18755937 -82624584 - L1 LINE L1 -2803 3343 2764 * 7841 151 17 7 chr15 18755929 18757252 -82623269 - L1 LINE L1 -1158 4988 3652 1855 217 35 27 chr15 18757252 18757731 -82622790 - L1 LINE L1 -3384 2762 2280 1137 202 129 14 chr15 18757762 18758049 -82622472 + MLT1E1 LTR MaLR 326 645 -9 729 200 21 14 chr15 18758230 18758370 -82622151 + AluJo SINE Alu 1 141 -171 1760 160 17 3 chr15 18758372 18758659 -82621862 + AluJb SINE Alu 1 291 -21 51 0 0 0 chr15 18758659 18758710 -82621811 + AT_rich Low_complexity Low_complexity 1 51 0 1225 167 84 4 chr15 18759003 18759278 -82621243 + AluY SINE Alu 1 297 -14 1457 202 26 0 chr15 18760074 18760346 -82620175 + AluJo SINE Alu 1 279 -33 188 86 29 0 chr15 18760348 18760383 -82620138 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 183 186 43 43 chr15 18760685 18760755 -82619766 - MIR SINE MIR -81 127 58 2129 47 98 7 chr15 18760915 18761190 -82619331 - AluY SINE Alu -11 300 1 248 157 20 0 chr15 18762175 18762226 -82618295 + MER41B LTR ERV1 483 534 -101 435 202 43 40 chr15 18762241 18762298 -82618223 + MER58B DNA MER1_type 70 125 -2295 2252 95 3 20 chr15 18762298 18762602 -82617919 + AluSg SINE Alu 1 299 -11 435 202 43 40 chr15 18762602 18762776 -82617745 + MER58B DNA MER1_type 125 340 -1 975 94 23 0 chr15 18763238 18763366 -82617155 + AluSg SINE Alu 1 131 -179 1229 150 0 0 chr15 18763783 18763970 -82616551 + AluSg SINE Alu 119 305 -5 747 180 0 0 chr15 18764080 18764208 -82616313 + FLAM_C SINE Alu 1 128 -5 2130 80 62 0 chr15 18764504 18764780 -82615741 - AluSc SINE Alu -16 293 1 2207 107 7 0 chr15 18764820 18765111 -82615410 - AluSx SINE Alu -19 293 1 865 254 58 86 chr15 18765219 18765649 -82614872 + L1MD1 LINE L1 5825 6242 0 2092 107 17 3 chr15 18766067 18766358 -82614163 + AluSx SINE Alu 1 295 -17 2179 99 20 16 chr15 18767026 18767330 -82613191 + AluSx SINE Alu 1 305 -7 2258 92 10 0 chr15 18767844 18768136 -82612385 - AluSq SINE Alu -18 295 1 21 36 0 0 chr15 18768461 18768489 -82612032 + AT_rich Low_complexity Low_complexity 1 28 0 303 270 30 10 chr15 18769255 18769355 -82611166 + GA-rich Low_complexity Low_complexity 2 103 0 197 176 0 70 chr15 18769355 18769497 -82611024 + (CCCCG)n Simple_repeat Simple_repeat 2 133 0 60 15 0 0 chr15 18769497 18769564 -82610957 + GC_rich Low_complexity Low_complexity 1 67 0 223 135 40 63 chr15 18769597 18769723 -82610798 + CT-rich Low_complexity Low_complexity 2 124 0 2313 67 0 0 chr15 18770517 18770821 -82609700 - AluY SINE Alu 0 304 1 2409 93 0 0 chr15 18771581 18771883 -82608638 - AluY SINE Alu -9 302 1 303 98 0 0 chr15 18771917 18771958 -82608563 + MIR3 SINE MIR 147 187 -21 285 222 0 0 chr15 18771918 18771972 -82608549 + L3 LINE CR1 1521 1574 -3 * 1492 248 81 27 chr15 18772808 18773251 -82607270 + MLT1C LTR MaLR 1 467 0 2395 68 0 0 chr15 18775861 18776157 -82604364 + AluY SINE Alu 1 296 -15 594 278 130 40 chr15 18776565 18776918 -82603603 - L1ME3A LINE L1 -4 6166 5782 640 262 179 19 chr15 18776920 18777183 -82603338 - L1ME3A LINE L1 -428 5734 5430 265 178 0 0 chr15 18777713 18777758 -82602763 - AluJb SINE Alu -9 293 249 679 187 0 0 chr15 18777794 18777901 -82602620 - AluJb SINE Alu -70 242 136 302 252 16 106 chr15 18778080 18778203 -82602318 + MIR SINE MIR 47 158 -104 776 274 55 30 chr15 18778216 18778544 -82601977 - LTR16B LTR ERVL 0 464 129 239 0 32 0 chr15 18778624 18778655 -82601866 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 5825 70 5 4 chr15 18778656 18779414 -82601107 - L1PA7 LINE L1 -13 6141 5383 207 0 0 0 chr15 18779632 18779655 -82600866 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 270 81 0 0 chr15 18779654 18779691 -82600830 + (TA)n Simple_repeat Simple_repeat 2 38 0 2620 49 0 0 chr15 18779940 18780244 -82600277 - AluY SINE Alu -7 304 1 2393 39 4 0 chr15 18780674 18780992 -82599529 + AluY SINE Alu 1 319 0 1130 158 11 5 chr15 18780995 18781185 -82599336 - L1PB3 LINE L1 -5 6149 5959 231 318 73 27 chr15 18781710 18781820 -82598701 + L2 LINE L2 3158 3272 0 184 70 70 18 chr15 18782074 18782131 -82598390 + (TA)n Simple_repeat Simple_repeat 1 60 0 443 137 32 55 chr15 18782404 18782877 -82597644 + (TA)n Simple_repeat Simple_repeat 1 462 0 405 141 33 56 chr15 18782879 18783156 -82597365 + (TATATG)n Simple_repeat Simple_repeat 1 270 0 210 133 40 46 chr15 18783167 18783340 -82597181 + (TA)n Simple_repeat Simple_repeat 1 172 0 24 67 0 0 chr15 18784597 18784642 -82595879 + AT_rich Low_complexity Low_complexity 1 45 0 299 232 52 45 chr15 18785308 18785463 -82595058 + Charlie7 DNA MER1_type 2421 2576 -36 2475 58 6 13 chr15 18786014 18786325 -82594196 - AluSp SINE Alu -4 309 1 22 35 0 0 chr15 18786568 18786597 -82593924 + AT_rich Low_complexity Low_complexity 1 29 0 997 320 120 35 chr15 18786855 18787387 -82593134 - L2 LINE L2 0 3313 2828 2205 118 0 0 chr15 18787387 18787691 -82592830 + AluSx SINE Alu 1 304 -8 997 320 120 35 chr15 18787691 18788199 -82592322 - L2 LINE L2 -485 2828 2180 707 89 0 20 chr15 18788404 18788505 -82592016 + AluSc SINE Alu 202 300 -9 348 313 32 47 chr15 18788620 18788898 -82591623 - L1ME4a LINE L1 -140 5981 5708 261 0 0 0 chr15 18789337 18789366 -82591155 + (A)n Simple_repeat Simple_repeat 1 29 0 297 0 0 0 chr15 18790575 18790608 -82589913 + (CA)n Simple_repeat Simple_repeat 2 34 0 2280 57 0 0 chr15 18791577 18791889 -82588632 - AluY SINE Alu 0 312 1 26 30 0 0 chr15 18792031 18792064 -82588457 + AT_rich Low_complexity Low_complexity 1 33 0 1693 167 0 44 chr15 18792583 18792901 -82587620 + AluJb SINE Alu 9 312 0 255 345 0 0 chr15 18793274 18793358 -82587163 - L2 LINE L2 0 3313 3230 273 262 24 12 chr15 18793462 18793546 -82586975 - L2 LINE L2 -1 3312 3228 2435 76 0 0 chr15 18793898 18794201 -82586320 + AluY SINE Alu 1 303 -8 25 31 0 0 chr15 18794233 18794265 -82586256 + AT_rich Low_complexity Low_complexity 1 32 0 235 143 18 0 chr15 18794734 18794790 -82585731 + C-rich Low_complexity Low_complexity 3 59 0 324 261 101 138 chr15 18795418 18796068 -82584453 + L1M2 LINE L1 451 1450 -5399 871 130 0 0 chr15 18799616 18799739 -82580782 + AluSg/x SINE Alu 172 294 -18 227 200 29 29 chr15 18799963 18800033 -82580488 + L1MC5 LINE L1 7856 7925 -36 5371 211 69 83 chr15 18800900 18801469 -82579052 + L1MDa LINE L1 831 1406 -5134 1937 120 4 0 chr15 18801469 18801744 -82578777 + AluSg SINE Alu 1 276 -34 5371 211 69 83 chr15 18801744 18802684 -82577837 + L1MDa LINE L1 1406 2358 -4182 1763 158 83 9 chr15 18802684 18803020 -82577501 - MER46B DNA MER2_type 0 236 1 5371 211 69 83 chr15 18803020 18803458 -82577063 + L1MDa LINE L1 2358 2801 -3739 2214 108 26 7 chr15 18803458 18803765 -82576756 + AluSq SINE Alu 1 313 0 5371 211 69 83 chr15 18803765 18805465 -82575056 + L1MDa LINE L1 2801 4422 -2118 273 311 126 0 chr15 18806383 18806502 -82574019 - MIR SINE MIR 0 262 129 2247 93 13 3 chr15 18806537 18806839 -82573682 - AluY SINE Alu -6 305 1 193 366 183 0 chr15 18806841 18806934 -82573587 - MIR SINE MIR -113 149 40 1822 91 14 47 chr15 18807094 18807370 -82573151 + AluSp SINE Alu 34 300 -13 1922 132 0 35 chr15 18807372 18807682 -82572839 + AluSq SINE Alu 1 299 -14 335 321 38 24 chr15 18807715 18807927 -82572594 + L1MEc LINE L1 1850 2064 -4332 849 245 144 25 chr15 18807936 18808304 -82572217 + L1MEc LINE L1 2215 2626 -3589 411 167 0 0 chr15 18809120 18809180 -82571341 - AluS SINE Alu -19 290 231 1239 121 0 0 chr15 18809182 18809347 -82571174 - AluSq SINE Alu -148 165 1 2124 194 84 20 chr15 18809347 18809905 -82570616 + L1MEc LINE L1 2752 3345 -2870 271 309 31 0 chr15 18809948 18810045 -82570476 - MIR SINE MIR -22 240 141 805 209 26 13 chr15 18810053 18810206 -82570315 - FRAM SINE Alu -21 155 1 1318 90 0 0 chr15 18810571 18810738 -82569783 + AluY SINE Alu 131 297 -14 2393 101 0 3 chr15 18810762 18811070 -82569451 + AluSq SINE Alu 1 307 -6 1425 173 43 18 chr15 18811073 18811350 -82569171 + L1M3 LINE L1 5325 5608 -572 663 229 0 0 chr15 18811351 18811469 -82569052 + FLAM_C SINE Alu 2 119 -24 722 108 0 0 chr15 18811479 18811581 -82568940 + L1MB3 LINE L1 6074 6175 -8 25 31 0 0 chr15 18811581 18811613 -82568908 + AT_rich Low_complexity Low_complexity 1 32 0 2603 59 0 0 chr15 18812028 18812332 -82568189 + AluY SINE Alu 1 304 -7 443 241 73 7 chr15 18812905 18813042 -82567479 - MER21B LTR ERV1 -57 806 661 581 220 16 44 chr15 18813046 18813228 -82567293 + L1MDa LINE L1 1543 1719 -4821 2057 162 117 5 chr15 18813273 18813700 -82566821 + LTR53 LTR ERVL 5 479 -40 825 222 57 4 chr15 18813773 18814003 -82566518 + L1ME2 LINE L1 5323 5564 -2431 902 248 17 111 chr15 18814156 18814262 -82566259 + MER58B DNA MER1_type 3 117 -2303 1687 79 8 75 chr15 18814262 18814514 -82566007 - AluSx SINE Alu -77 235 1 902 248 17 111 chr15 18814514 18814779 -82565742 + MER58B DNA MER1_type 117 339 -2 2021 149 0 0 chr15 18815010 18815312 -82565209 + AluSg1 SINE Alu 1 302 -7 21 0 0 0 chr15 18815504 18815525 -82564996 + AT_rich Low_complexity Low_complexity 1 21 0 792 237 118 28 chr15 18816382 18816669 -82563852 + L1ME2 LINE L1 5851 6163 -1 306 0 0 0 chr15 18816822 18816856 -82563665 + (TG)n Simple_repeat Simple_repeat 1 34 0 28 0 0 0 chr15 18816870 18816898 -82563623 + AT_rich Low_complexity Low_complexity 1 28 0 2250 114 0 3 chr15 18816961 18817269 -82563252 - AluSx SINE Alu -2 310 4 878 106 8 0 chr15 18817447 18817579 -82562942 - AluSp SINE Alu -180 133 1 843 219 60 33 chr15 18817608 18817732 -82562789 + AluJo SINE Alu 2 136 -176 1873 118 0 21 chr15 18817732 18818020 -82562501 - AluSq SINE Alu -15 298 17 843 219 60 33 chr15 18818020 18818110 -82562411 + AluJo SINE Alu 136 222 -90 1381 60 11 11 chr15 18818167 18818349 -82562172 - AluSg/x SINE Alu -16 294 113 506 240 150 61 chr15 18818551 18818715 -82561806 + L1MDa LINE L1 2469 2617 -3923 2067 102 20 23 chr15 18818715 18819020 -82561501 + AluSg SINE Alu 7 310 0 506 240 150 61 chr15 18819020 18819589 -82560932 + L1MDa LINE L1 2617 3229 -3311 523 302 0 23 chr15 18819774 18820268 -82560253 + CT-rich Low_complexity Low_complexity 1 482 0 2345 68 0 0 chr15 18820457 18820774 -82559747 + AluY SINE Alu 1 317 0 183 340 113 0 chr15 18820810 18820916 -82559605 - MER5A DNA MER1_type -48 141 24 195 317 195 0 chr15 18821258 18821381 -82559140 - MIR3 SINE MIR -9 199 53 2114 130 10 0 chr15 18821728 18822040 -82558481 - AluSp SINE Alu -2 311 1 512 238 192 21 chr15 18822179 18822372 -82558149 - MIR SINE MIR -14 248 23 270 254 105 26 chr15 18823973 18824087 -82556434 - L2 LINE L2 -3 3310 3188 410 301 66 0 chr15 18824224 18824360 -82556161 - MIR SINE MIR -70 192 48 222 250 0 0 chr15 18826299 18826387 -82554134 + G-rich Low_complexity Low_complexity 2 89 0 1892 132 3 10 chr15 18826911 18827199 -82553322 + AluSx SINE Alu 1 286 -26 438 53 0 0 chr15 18827200 18827257 -82553264 + (CA)n Simple_repeat Simple_repeat 2 58 0 790 151 68 14 chr15 18827643 18827789 -82552732 + MER5A DNA MER1_type 3 156 -33 1326 186 37 15 chr15 18828534 18828803 -82551718 + AluJo SINE Alu 1 275 -37 352 248 106 33 chr15 18828912 18829259 -82551262 + L1P2 LINE L1 5174 5565 -589 2006 117 3 0 chr15 18829830 18830176 -82550345 - AluSx SINE Alu 0 347 1 717 186 103 0 chr15 18830367 18830523 -82549998 + MER5A DNA MER1_type 16 187 -2 669 293 25 37 chr15 18830753 18831074 -82549447 + L1MC4 LINE L1 7725 8041 -1 262 221 130 0 chr15 18831571 18831648 -82548873 - L1M4 LINE L1 -1310 4836 4750 2206 74 3 7 chr15 18831665 18831964 -82548557 - AluY SINE Alu -13 298 1 851 318 165 14 chr15 18832694 18833316 -82547205 - L2 LINE L2 -245 3068 2353 233 269 60 0 chr15 18833492 18833559 -82546962 - L2 LINE L2 -1040 2274 2204 1843 186 49 13 chr15 18834177 18834564 -82545957 + LTR15 LTR ERV1 1 401 -92 738 220 13 48 chr15 18834568 18834681 -82545840 + AluJo SINE Alu 2 105 -207 1634 141 0 50 chr15 18834681 18835000 -82545521 - AluSp SINE Alu -10 303 1 738 220 13 48 chr15 18835000 18835113 -82545408 + AluJo SINE Alu 105 220 -92 252 33 0 0 chr15 18835115 18835145 -82545376 + AluJb SINE Alu 88 117 -185 1449 175 3 20 chr15 18835156 18835453 -82545068 - AluSp SINE Alu -15 298 7 1121 113 0 59 chr15 18835465 18835668 -82544853 - AluSg/x SINE Alu -1 311 121 2353 74 0 10 chr15 18886109 18886406 -82494115 - AluY SINE Alu -13 298 5 24 0 0 0 chr15 18886413 18886437 -82494084 + AT_rich Low_complexity Low_complexity 1 24 0 2130 133 0 0 chr15 18886508 18886802 -82493719 + AluJb SINE Alu 1 294 -18 2322 100 0 3 chr15 18886921 18887221 -82493300 + AluSx SINE Alu 1 299 -13 2322 109 3 0 chr15 18887225 18887537 -82492984 + AluSp SINE Alu 1 313 0 2087 138 0 0 chr15 18887697 18887993 -82492528 - AluSx SINE Alu -16 296 1 2131 105 10 0 chr15 18888022 18888318 -82492203 + AluSq SINE Alu 6 304 -9 448 257 37 39 chr15 18888320 18888346 -82492175 - L1M4 LINE L1 -3749 2633 2608 1908 162 3 0 chr15 18888346 18888648 -82491873 - AluJb SINE Alu -9 303 1 448 257 37 39 chr15 18888648 18888832 -82491689 - L1M4 LINE L1 -3774 2608 2421 2137 120 3 3 chr15 18888834 18889135 -82491386 - AluSp SINE Alu -12 301 1 1451 152 13 0 chr15 18889358 18889582 -82490939 + AluJb SINE Alu 1 227 -85 2112 93 0 0 chr15 18889589 18889857 -82490664 - AluSx SINE Alu -44 268 1 1720 135 0 75 chr15 18889861 18890180 -82490341 - AluJo SINE Alu -17 295 1 35 88 0 0 chr15 18890837 18890928 -82489593 + GC_rich Low_complexity Low_complexity 1 91 0 191 188 21 0 chr15 18891256 18891304 -82489217 + CT-rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr15 18892126 18892154 -82488367 + AT_rich Low_complexity Low_complexity 1 28 0 2258 92 10 0 chr15 18892479 18892771 -82487750 + AluSq SINE Alu 1 295 -18 2209 95 20 16 chr15 18893285 18893589 -82486932 - AluSx SINE Alu -7 305 1 2083 107 17 3 chr15 18894257 18894547 -82485974 - AluSx SINE Alu -18 294 1 882 251 58 86 chr15 18894965 18895395 -82485126 - L1MD1 LINE L1 0 6242 5825 2207 107 7 0 chr15 18895503 18895794 -82484727 + AluSx SINE Alu 1 293 -19 2130 80 62 0 chr15 18895834 18896110 -82484411 + AluSc SINE Alu 1 293 -16 747 180 0 0 chr15 18896406 18896534 -82483987 - FLAM_C SINE Alu -5 128 1 1229 150 0 0 chr15 18896644 18896831 -82483690 - AluSg SINE Alu -5 305 119 975 94 23 0 chr15 18897249 18897377 -82483144 - AluSg SINE Alu -179 131 1 435 202 43 40 chr15 18897839 18898013 -82482508 - MER58B DNA MER1_type -2080 340 125 2244 96 3 20 chr15 18898013 18898316 -82482205 - AluSg SINE Alu -12 298 1 435 202 43 40 chr15 18898316 18898373 -82482148 - MER58B DNA MER1_type -2295 125 70 248 157 20 0 chr15 18898388 18898439 -82482082 - MER41A LTR ERV1 -101 453 402 2166 43 98 7 chr15 18899424 18899700 -82480821 + AluY SINE Alu 1 301 -10 183 186 43 43 chr15 18899860 18899930 -82480591 + MIR SINE MIR 58 127 -81 188 86 29 0 chr15 18900232 18900267 -82480254 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 1457 202 26 0 chr15 18900269 18900541 -82479980 - AluJo SINE Alu -33 279 1 190 350 17 8 chr15 18901134 18901254 -82479267 + L2 LINE L2 2164 2284 -1030 2008 140 3 3 chr15 18901410 18901710 -82478811 - AluJb SINE Alu -12 300 1 2231 120 0 0 chr15 18901789 18902098 -82478423 - AluY SINE Alu -2 309 1 51 0 0 0 chr15 18902391 18902442 -82478079 + AT_rich Low_complexity Low_complexity 1 51 0 1760 160 17 3 chr15 18902442 18902729 -82477792 - AluJb SINE Alu -21 291 1 729 200 21 14 chr15 18902731 18902871 -82477650 - AluJo SINE Alu -171 141 1 1137 202 129 14 chr15 18903052 18903339 -82477182 - MLT1E1 LTR MaLR -9 645 326 1855 217 35 27 chr15 18903370 18903849 -82476672 + L1MA3 LINE L1 2280 2762 -3384 7841 151 17 7 chr15 18903849 18905172 -82475349 + L1 LINE L1 3652 4988 -1158 6397 169 47 23 chr15 18905164 18905759 -82474762 + L1MA3 LINE L1 2764 3344 -2802 * 2164 135 0 3 chr15 18905759 18906063 -82474458 + AluSx SINE Alu 1 303 -9 6397 169 47 23 chr15 18906063 18906800 -82473721 + L1MA3 LINE L1 3344 4127 -2019 5266 22 2 3 chr15 18906796 18907590 -82472931 - L1PA2 LINE L1 -594 5561 4770 * 5382 15 0 8 chr15 18907590 18908184 -82472337 + L1PA2 LINE L1 5553 6155 0 6106 146 16 40 chr15 18908191 18908230 -82472291 + L1MA3 LINE L1 4124 4162 -2143 2189 133 13 0 chr15 18908230 18908538 -82471983 + AluSx SINE Alu 1 312 0 6106 146 16 40 chr15 18908538 18908701 -82471820 + L1MA3 LINE L1 4162 4327 -1978 2387 101 0 0 chr15 18908701 18909009 -82471512 - AluSx SINE Alu -4 308 1 6106 146 16 40 chr15 18909009 18910795 -82469726 + L1MA3 LINE L1 4327 6059 -246 2170 119 3 0 chr15 18910795 18911090 -82469431 + AluSc SINE Alu 1 296 -13 429 70 0 0 chr15 18911111 18911168 -82469353 + (TA)n Simple_repeat Simple_repeat 1 57 0 22 0 0 0 chr15 18911408 18911430 -82469091 + AT_rich Low_complexity Low_complexity 1 22 0 2187 128 0 0 chr15 18911464 18911761 -82468760 - AluSx SINE Alu -15 297 1 471 270 138 6 chr15 18911794 18911953 -82468568 - L1MD3 LINE L1 -1153 6842 6663 2170 125 3 6 chr15 18912040 18912353 -82468168 - AluSx SINE Alu 0 312 1 25 51 0 0 chr15 18912472 18912511 -82468010 + AT_rich Low_complexity Low_complexity 1 39 0 390 300 144 34 chr15 18912542 18912812 -82467709 - L1MC4a LINE L1 -1561 6247 5928 2171 115 3 3 chr15 18912812 18913125 -82467396 - AluSq SINE Alu 0 313 1 390 300 144 34 chr15 18913125 18913207 -82467314 - L1MC4a LINE L1 -1880 5928 5856 276 105 0 0 chr15 18914031 18914069 -82466452 + tRNA-Phe-TTC tRNA tRNA 1 38 -38 2367 75 0 16 chr15 18914074 18914380 -82466141 - AluY SINE Alu -9 302 2 2266 114 0 3 chr15 18914443 18914751 -82465770 + AluSx SINE Alu 4 310 -2 28 0 0 0 chr15 18914814 18914842 -82465679 + AT_rich Low_complexity Low_complexity 1 28 0 273 29 0 0 chr15 18914855 18914889 -82465632 + (CA)n Simple_repeat Simple_repeat 1 34 0 798 233 118 28 chr15 18915042 18915329 -82465192 - L1ME2 LINE L1 -1 6163 5851 2039 149 0 0 chr15 18916398 18916700 -82463821 - AluSg1 SINE Alu -7 302 1 895 248 17 111 chr15 18916932 18917197 -82463324 - MER58B DNA MER1_type -2081 339 117 1710 79 8 75 chr15 18917197 18917449 -82463072 + AluSx SINE Alu 1 235 -77 895 248 17 111 chr15 18917449 18917555 -82462966 - MER58B DNA MER1_type -2303 117 3 813 222 57 4 chr15 18917707 18917937 -82462584 - L1ME2 LINE L1 -2431 5564 5323 2073 164 117 5 chr15 18918010 18918437 -82462084 - LTR53 LTR ERVL -40 479 5 577 220 16 44 chr15 18918482 18918664 -82461857 - L1MDa LINE L1 -4821 1719 1543 443 241 73 7 chr15 18918668 18918805 -82461716 + MER21B LTR ERV1 661 806 -57 2617 59 0 0 chr15 18919378 18919681 -82460840 - AluY SINE Alu -8 303 1 25 31 0 0 chr15 18920096 18920128 -82460393 + AT_rich Low_complexity Low_complexity 1 32 0 694 108 0 0 chr15 18920128 18920230 -82460291 - L1MB3 LINE L1 -8 6175 6074 606 237 0 0 chr15 18920240 18920358 -82460163 - FLAM_C SINE Alu -24 119 2 1415 173 43 18 chr15 18920359 18920636 -82459885 - L1M3 LINE L1 -572 5608 5325 2396 101 0 3 chr15 18920639 18920946 -82459575 - AluSq SINE Alu -7 306 1 1441 83 0 0 chr15 18920956 18921137 -82459384 - AluY SINE Alu 0 311 131 742 209 26 13 chr15 18921502 18921655 -82458866 + FRAM SINE Alu 1 155 -21 246 309 31 0 chr15 18921663 18921760 -82458761 + MIR SINE MIR 141 240 -22 2080 194 84 20 chr15 18921803 18922361 -82458160 - L1M3 LINE L1 -2870 3276 2683 1251 121 0 0 chr15 18922361 18922526 -82457995 + AluSq SINE Alu 1 165 -148 397 167 0 0 chr15 18922528 18922588 -82457933 + AluS SINE Alu 233 292 -9 833 242 148 25 chr15 18923382 18923775 -82456746 - L1M3 LINE L1 -3560 2586 2146 314 325 38 24 chr15 18923784 18923996 -82456525 - L1MEc LINE L1 -4332 2064 1850 1935 132 0 35 chr15 18924029 18924339 -82456182 - AluSq SINE Alu -14 299 1 1842 99 15 33 chr15 18924341 18924613 -82455908 - AluSp SINE Alu -13 300 34 2264 93 13 3 chr15 18924868 18925170 -82455351 + AluY SINE Alu 1 305 -6 245 311 126 0 chr15 18925205 18925324 -82455197 + MIR SINE MIR 129 262 0 5260 211 69 83 chr15 18926242 18927943 -82452578 - L1MDa LINE L1 -2118 4422 2699 2232 108 26 7 chr15 18927943 18928250 -82452271 - AluSq SINE Alu 0 313 1 5260 211 69 83 chr15 18928250 18928688 -82451833 - L1MDa LINE L1 -3841 2699 2256 1667 158 83 9 chr15 18928688 18929024 -82451497 + MER46B DNA MER2_type 1 236 0 5260 211 69 83 chr15 18929024 18929962 -82450559 - L1MDa LINE L1 -4284 2256 1406 1948 124 4 0 chr15 18929962 18930237 -82450284 - AluSg SINE Alu -34 276 1 5260 211 69 83 chr15 18930237 18930806 -82449715 - L1MDa LINE L1 -5134 1406 831 2226 104 0 17 chr15 18931967 18932266 -82448255 - AluSx SINE Alu -18 294 1 492 264 34 7 chr15 18932347 18932495 -82448026 + MIR SINE MIR 81 232 -30 1401 153 142 47 chr15 18933054 18933237 -82447284 - AluJo SINE Alu -11 301 82 324 0 0 0 chr15 18933237 18933273 -82447248 + (TG)n Simple_repeat Simple_repeat 1 36 0 1401 153 142 47 chr15 18933273 18933364 -82447157 - AluJo SINE Alu -230 82 1 2048 97 48 7 chr15 18933599 18933888 -82446633 + AluSp SINE Alu 1 301 -12 206 246 15 0 chr15 18934219 18934284 -82446237 + T-rich Low_complexity Low_complexity 4 69 0 1409 178 63 72 chr15 18934306 18934492 -82446029 - MER2 DNA MER2_type 0 345 159 1607 160 82 3 chr15 18934492 18934774 -82445747 - AluJb SINE Alu -8 304 1 792 164 0 15 chr15 18934780 18934914 -82445607 - FLAM_C SINE Alu 0 133 2 1409 178 63 72 chr15 18934914 18935068 -82445453 - MER2 DNA MER2_type -191 154 1 1029 210 174 3 chr15 18935415 18935743 -82444778 - L1MD2 LINE L1 -16 6343 5960 25 31 0 0 chr15 18935775 18935807 -82444714 + AT_rich Low_complexity Low_complexity 1 32 0 1292 175 18 13 chr15 18935807 18936035 -82444486 - AluJo SINE Alu -24 288 60 344 172 81 46 chr15 18936035 18936122 -82444399 - L1MD2 LINE L1 -469 5890 5801 1827 120 11 19 chr15 18936123 18936389 -82444132 - AluSx SINE Alu 0 312 49 1708 114 4 0 chr15 18936673 18936910 -82443611 - AluSg/x SINE Alu 0 310 73 818 93 0 0 chr15 18937078 18937213 -82443308 - AluY SINE Alu 0 309 175 239 300 90 0 chr15 18938027 18938127 -82442394 + MIR SINE MIR 40 148 -60 21 36 0 0 chr15 18939101 18939129 -82441392 + AT_rich Low_complexity Low_complexity 1 28 0 2188 93 0 23 chr15 18941207 18941508 -82439013 - AluY SINE Alu -17 294 1 28 48 0 0 chr15 18942561 18942603 -82437918 + AT_rich Low_complexity Low_complexity 1 42 0 270 81 0 0 chr15 18942607 18942644 -82437877 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 189 0 0 0 chr15 18942665 18942686 -82437835 + (TCTA)n Simple_repeat Simple_repeat 4 24 0 1590 111 0 4 chr15 18942710 18942935 -82437586 + AluSp SINE Alu 85 308 -5 1053 252 45 13 chr15 18945999 18946309 -82434212 - L1ME1 LINE L1 -44 6122 5803 2245 103 3 0 chr15 18946364 18946655 -82433866 - AluSq SINE Alu -21 292 1 708 234 53 6 chr15 18948558 18948729 -82431792 + MER58A DNA MER1_type 45 223 -1 1921 151 43 0 chr15 18948840 18949139 -82431382 - AluSx SINE Alu 0 312 1 225 128 26 0 chr15 18950822 18950861 -82429660 - MER58B DNA MER1_type 0 341 302 1591 252 29 25 chr15 18952148 18952675 -82427846 - L1M4 LINE L1 -1779 4367 3839 922 130 0 0 chr15 18952695 18952826 -82427695 - FLAM_C SINE Alu -7 136 6 2803 237 55 51 chr15 18952830 18952898 -82427623 - L1M4 LINE L1 -2300 3846 3780 2080 116 0 47 chr15 18952898 18953216 -82427305 - AluSx SINE Alu -9 303 1 2803 237 55 51 chr15 18953216 18953495 -82427026 - L1M4 LINE L1 -2366 3780 3504 2298 107 3 3 chr15 18953495 18953803 -82426718 + AluSq SINE Alu 2 309 -4 2803 237 55 51 chr15 18953803 18954412 -82426109 - L1M4 LINE L1 -2642 3504 2881 1974 128 3 10 chr15 18954412 18954701 -82425820 - AluSp SINE Alu -26 287 1 2803 237 55 51 chr15 18954701 18954905 -82425616 - L1M4 LINE L1 -3265 2881 2679 369 92 0 19 chr15 18954905 18955143 -82425378 + AluY SINE Alu 1 295 -6 280 188 94 0 chr15 18955145 18955209 -82425312 - L1M4 LINE L1 -3460 2686 2617 1963 74 0 4 chr15 18955994 18956236 -82424285 + AluY SINE Alu 1 241 -70 1026 248 158 38 chr15 18957252 18957535 -82422986 - L1ME2 LINE L1 -112 6052 5805 1683 174 10 3 chr15 18957535 18957833 -82422688 - AluJb SINE Alu -10 302 3 1026 248 158 38 chr15 18957833 18958054 -82422467 - L1ME2 LINE L1 -359 5805 5487 1984 138 7 0 chr15 18958583 18958887 -82421634 - AluSp SINE Alu -7 306 1 2165 121 0 13 chr15 18958904 18959209 -82421312 - AluSx SINE Alu -11 301 1 280 246 32 56 chr15 18960659 18960785 -82419736 + Charlie5 DNA MER1_type 1 123 -2489 * 1099 218 5 63 chr15 18960768 18961077 -82419444 + Charlie5 DNA MER1_type 2222 2508 -116 2251 106 3 0 chr15 18961077 18961370 -82419151 - AluSx SINE Alu -18 294 1 1099 218 5 63 chr15 18961370 18961427 -82419094 + Charlie5 DNA MER1_type 2508 2567 -57 2044 153 0 0 chr15 18961434 18961728 -82418793 - AluSx SINE Alu -18 294 1 23 33 0 0 chr15 18962408 18962438 -82418083 + AT_rich Low_complexity Low_complexity 1 30 0 2082 101 0 34 chr15 18962934 18963231 -82417290 + AluSc SINE Alu 1 287 -22 2454 81 7 3 chr15 18965161 18965469 -82415052 + AluSq SINE Alu 1 309 -4 21 0 0 0 chr15 18965570 18965591 -82414930 + AT_rich Low_complexity Low_complexity 1 21 0 790 171 0 8 chr15 18965593 18965722 -82414799 + FLAM_A SINE Alu 1 128 -5 609 179 0 0 chr15 18967200 18967323 -82413198 + (TG)n Simple_repeat Simple_repeat 2 124 0 2127 128 0 0 chr15 18967326 18967623 -82412898 - AluSx SINE Alu -15 297 1 189 271 0 0 chr15 18967625 18967684 -82412837 + L3b LINE CR1 1355 1413 -170 1106 272 101 34 chr15 18968500 18968714 -82411807 - L1ME2 LINE L1 -299 5865 5667 1445 155 102 11 chr15 18968714 18968978 -82411543 - AluJb SINE Alu -21 291 4 1106 272 101 34 chr15 18968978 18969795 -82410726 - L1ME2 LINE L1 -497 5667 4830 1064 264 53 24 chr15 18969822 18970239 -82410282 - L1ME2 LINE L1 -1995 4151 3723 242 302 17 17 chr15 18970496 18970612 -82409909 - L1ME2 LINE L1 -2475 3671 3556 * 4608 179 60 8 chr15 18970591 18971040 -82409481 - L1MB3 LINE L1 -31 6152 5728 2261 101 3 7 chr15 18971040 18971348 -82409173 - AluSc SINE Alu -2 307 1 4608 179 60 8 chr15 18971348 18972224 -82408297 - L1MB3 LINE L1 -455 5728 4754 224 30 30 0 chr15 18972431 18972464 -82408057 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2378 68 0 0 chr15 18972466 18972747 -82407774 - AluY SINE Alu -26 285 5 489 281 93 56 chr15 18972753 18973202 -82407319 - L1MC5 LINE L1 -179 7782 7317 390 208 32 97 chr15 18973370 18973524 -82406997 - L1MC5 LINE L1 -861 7100 6957 772 244 45 42 chr15 18973574 18973910 -82406611 - L1MB3 LINE L1 -3097 3049 2713 1873 159 0 0 chr15 18976000 18976290 -82404231 + AluJb SINE Alu 1 290 -22 2211 79 0 0 chr15 18976305 18976584 -82403937 + AluSq SINE Alu 9 287 -26 2232 78 3 29 chr15 18980317 18980625 -82399896 - AluSc SINE Alu -9 300 1 2048 227 72 39 chr15 18981094 18981680 -82398841 - MER77 LTR ERV1 0 605 1 1060 256 53 12 chr15 18981834 18982154 -82398367 + MER58B DNA MER1_type 4 336 -5 22 0 0 0 chr15 18982324 18982346 -82398175 + AT_rich Low_complexity Low_complexity 1 22 0 255 61 0 0 chr15 18984722 18984755 -82395766 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 3588 191 67 67 chr15 18984762 18985581 -82394940 - L1MB5 LINE L1 0 6174 5357 2227 109 0 0 chr15 18985581 18985893 -82394628 - AluSx SINE Alu 0 312 1 3588 191 67 67 chr15 18985893 18986783 -82393738 - L1MB5 LINE L1 -817 5357 4457 1513 221 95 12 chr15 18986788 18987159 -82393362 - L1MB5 LINE L1 -2486 3660 3234 2311 87 0 6 chr15 18987159 18987470 -82393051 - AluSc SINE Alu 0 309 1 1513 221 95 12 chr15 18987470 18987605 -82392916 - L1MB5 LINE L1 -2912 3234 3112 912 196 5 5 chr15 18987610 18987799 -82392722 - AluJb SINE Alu -6 306 118 1390 213 67 13 chr15 18987803 18988253 -82392268 - L1MB5 LINE L1 -3060 3086 2613 1544 148 0 44 chr15 18988386 18988657 -82391864 + AluJb SINE Alu 23 281 -31 225 139 0 0 chr15 18988672 18988715 -82391806 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 369 0 0 0 chr15 18988718 18988759 -82391762 + (TG)n Simple_repeat Simple_repeat 2 42 0 30 59 0 0 chr15 18988759 18988810 -82391711 + AT_rich Low_complexity Low_complexity 1 51 0 1797 272 52 47 chr15 18988810 18989775 -82390746 - HERVL68 LTR ERVL -1920 1117 60 2224 186 107 0 chr15 18989783 18990289 -82390232 - MER68 LTR ERV1 -2 560 1 328 264 107 21 chr15 18990291 18990431 -82390090 - L1ME LINE L1 -339 5782 5631 626 211 55 0 chr15 18993938 18994066 -82386455 + AluJb SINE Alu 174 308 -4 276 75 132 0 chr15 18994066 18994119 -82386402 + L1MC1 LINE L1 6265 6324 -9 1504 166 80 43 chr15 18994496 18994908 -82385613 - MLT1C LTR MaLR 0 467 1 864 236 145 51 chr15 18994908 18995294 -82385227 - MLT1C LTR MaLR -42 425 3 250 307 17 22 chr15 18995628 18995807 -82384714 + (TGAG)n Simple_repeat Simple_repeat 1 178 0 311 323 6 0 chr15 18996122 18996289 -82384232 + (TG)n Simple_repeat Simple_repeat 1 168 0 21 36 0 0 chr15 18996559 18996587 -82383934 + AT_rich Low_complexity Low_complexity 1 28 0 695 167 0 0 chr15 18996773 18996887 -82383634 + FLAM_A SINE Alu 20 133 -9 1997 117 0 19 chr15 18997717 18998025 -82382496 + AluSg SINE Alu 1 302 -8 2113 89 7 13 chr15 18999660 18999964 -82380557 - AluSx SINE Alu -10 302 1 301 264 179 9 chr15 18999987 19000093 -82380428 - L1ME4a LINE L1 -3 6118 5995 353 242 10 0 chr15 19002127 19002226 -82378295 + MER5A DNA MER1_type 10 98 -80 2209 94 0 10 chr15 19002458 19002766 -82377755 + AluY SINE Alu 1 305 -6 1086 96 5 75 chr15 19002766 19002954 -82377567 + AluSg/x SINE Alu 133 307 -3 912 190 194 7 chr15 19003100 19003252 -82377269 + MER2 DNA MER2_type 2 124 -220 2427 75 0 0 chr15 19003252 19003560 -82376961 + AluY SINE Alu 1 308 -3 912 190 194 7 chr15 19003560 19003696 -82376825 + MER2 DNA MER2_type 124 344 0 935 178 40 0 chr15 19004960 19005134 -82375387 + MER58A DNA MER1_type 44 224 0 2069 111 3 3 chr15 19005459 19005757 -82374764 + AluSx SINE Alu 1 298 -14 1131 133 0 0 chr15 19005867 19006033 -82374488 - AluSc SINE Alu -12 297 132 2333 87 0 0 chr15 19006033 19006342 -82374179 - AluY SINE Alu -2 309 1 481 296 65 88 chr15 19007683 19008034 -82372487 - L1MEc LINE L1 -4673 1421 1065 345 273 55 55 chr15 19008037 19008286 -82372235 - L1MEc LINE L1 -5026 1044 793 2221 78 10 0 chr15 19008286 19008581 -82371940 - AluSg SINE Alu -12 298 1 345 273 55 55 chr15 19008581 19008661 -82371860 - L1MEc LINE L1 -5276 794 715 343 239 62 44 chr15 19009346 19009459 -82371062 - L1MEc LINE L1 -5954 116 2 249 311 259 11 chr15 19011502 19011788 -82368733 - L2 LINE L2 -5 3308 2952 408 253 45 62 chr15 19012053 19012342 -82368179 - L1MC5 LINE L1 -184 7777 7494 1161 178 201 22 chr15 19012347 19012505 -82368016 - MLT1B LTR MaLR 0 374 246 2057 108 7 0 chr15 19012505 19012802 -82367719 - AluSx SINE Alu -9 303 5 1161 178 201 22 chr15 19012802 19012959 -82367562 - MLT1B LTR MaLR -128 246 15 339 291 109 11 chr15 19012975 19013150 -82367371 - L1MC5 LINE L1 -465 7496 7305 514 308 169 17 chr15 19013284 19013752 -82366769 - L1MC5 LINE L1 -735 7226 6688 1854 162 3 0 chr15 19013759 19014055 -82366466 - AluJb SINE Alu -15 297 1 1412 207 223 24 chr15 19014673 19015184 -82365337 - MER90 LTR ERV1 0 614 2 1838 100 12 0 chr15 19015190 19015449 -82365072 - AluSq SINE Alu -51 262 1 589 217 95 59 chr15 19016042 19016263 -82364258 - L1MC5 LINE L1 -53 7908 7680 1733 191 48 18 chr15 19017055 19017447 -82363074 - L1MB4 LINE L1 0 6180 5777 1182 121 0 0 chr15 19017447 19017620 -82362901 - AluSg/x SINE Alu -17 293 121 21 0 0 0 chr15 19017621 19017642 -82362879 + AT_rich Low_complexity Low_complexity 1 21 0 388 285 66 79 chr15 19017669 19017851 -82362670 - L1MDa LINE L1 -4157 2383 2203 2125 115 0 0 chr15 19017851 19018147 -82362374 - AluSx SINE Alu -16 296 1 388 285 66 79 chr15 19018147 19018192 -82362329 - L1MDa LINE L1 -4337 2203 2159 1856 36 0 9 chr15 19018321 19018574 -82361947 - AluY SINE Alu 0 309 59 395 22 0 0 chr15 19118807 19118852 -82261669 + (TC)n Simple_repeat Simple_repeat 2 46 0 1170 121 0 12 chr15 19120896 19121069 -82259452 + AluSg/x SINE Alu 86 256 -56 5123 221 51 21 chr15 19121069 19121163 -82259358 + L1M2c LINE L1 11 101 -6688 1983 104 24 3 chr15 19121163 19121450 -82259071 + AluY SINE Alu 1 293 -18 5123 221 51 21 chr15 19121450 19122519 -82258002 + L1M2c LINE L1 101 1209 -5580 21 0 0 0 chr15 19122665 19122686 -82257835 + GC_rich Low_complexity Low_complexity 1 21 0 782 234 88 68 chr15 19123623 19123700 -82256821 + L1MEc LINE L1 1978 2052 -4344 2188 92 0 3 chr15 19123700 19123995 -82256526 + AluSx SINE Alu 1 294 -18 782 234 88 68 chr15 19123995 19124296 -82256225 + L1MEc LINE L1 2052 2373 -4023 2070 122 3 3 chr15 19124296 19124600 -82255921 + AluSp SINE Alu 1 304 -9 782 234 88 68 chr15 19124600 19124753 -82255768 + L1MEc LINE L1 2373 2521 -3875 1602 109 26 4 chr15 19124778 19125007 -82255514 + AluSx SINE Alu 1 234 -78 984 117 0 0 chr15 19125007 19125144 -82255377 + AluSp/q SINE Alu 170 306 -7 301 285 62 17 chr15 19125129 19125308 -82255213 + L1MEc LINE L1 2495 2681 -3534 * 309 261 11 0 chr15 19125440 19125528 -82254993 + L1MEc LINE L1 2758 2846 -3369 695 188 0 45 chr15 19125531 19125685 -82254836 - MER44D DNA MER2_type 0 609 463 731 190 0 0 chr15 19125685 19125806 -82254715 + AluSg/x SINE Alu 156 276 -36 180 0 0 0 chr15 19125827 19125847 -82254674 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 543 127 100 0 chr15 19125847 19125957 -82254564 - MER44D DNA MER2_type -138 467 347 348 185 0 0 chr15 19125976 19126030 -82254491 + MER44D DNA MER2_type 38 361 -248 449 68 17 0 chr15 19126053 19126367 -82254154 + AluYb8 SINE Alu 2 316 0 346 231 0 39 chr15 19126368 19126472 -82254049 + L1M3 LINE L1 97 196 -6663 * 1202 229 64 44 chr15 19126442 19126549 -82253972 + L1M3 LINE L1 5605 5708 -1249 2238 120 3 0 chr15 19126549 19126849 -82253672 + AluSx SINE Alu 1 301 -11 1202 229 64 44 chr15 19126849 19127286 -82253235 + L1M3 LINE L1 5708 6160 -797 844 196 33 76 chr15 19127280 19127420 -82253101 + L1ME3 LINE L1 5564 5688 -476 * 2495 87 3 0 chr15 19127420 19127729 -82252792 - AluSp SINE Alu -3 310 1 844 196 33 76 chr15 19127729 19127864 -82252657 + L1ME3 LINE L1 5688 5827 -337 1112 74 0 27 chr15 19127930 19128063 -82252458 + AluSg/x SINE Alu 167 297 -15 2511 87 0 3 chr15 19128063 19128373 -82252148 + AluY SINE Alu 1 309 -2 1112 74 0 27 chr15 19128373 19128388 -82252133 + AluSg/x SINE Alu 297 311 -1 540 157 41 6 chr15 19128389 19128501 -82252020 + L1M3 LINE L1 6297 6396 -598 422 230 43 123 chr15 19128496 19128666 -82251855 + L1ME3 LINE L1 5813 5931 -231 * 2388 105 0 3 chr15 19128666 19128971 -82251550 + AluSx SINE Alu 1 304 -8 422 230 43 123 chr15 19128971 19129113 -82251408 + L1ME3 LINE L1 5931 6083 -79 505 218 8 45 chr15 19129113 19129246 -82251275 - MLT2C1 LTR ERVL 0 397 270 2396 90 0 10 chr15 19129262 19129572 -82250949 + AluSp SINE Alu 1 307 -6 1574 174 15 47 chr15 19129703 19129826 -82250695 + MLT1A1 LTR MaLR 38 163 -202 2703 58 0 0 chr15 19129826 19130135 -82250386 + AluY SINE Alu 1 309 -2 1574 174 15 47 chr15 19130135 19130350 -82250171 + MLT1A1 LTR MaLR 163 365 0 438 301 139 26 chr15 19130352 19130661 -82249860 + MLT1C LTR MaLR 72 415 -52 2507 50 0 10 chr15 19130663 19130961 -82249560 + AluY SINE Alu 1 295 -16 1389 191 14 11 chr15 19137792 19138075 -82242446 + MSTB1 LTR MaLR 149 432 0 2099 143 3 0 chr15 19138235 19138535 -82241986 - AluSx SINE Alu -11 301 1 1956 163 16 7 chr15 19138912 19139219 -82241302 - AluJb SINE Alu -2 310 1 1446 196 43 47 chr15 19139499 19139800 -82240721 + AluSx SINE Alu 1 300 -12 2246 104 24 0 chr15 19140169 19140456 -82240065 + AluSx SINE Alu 1 294 -18 2664 49 0 3 chr15 19141571 19141878 -82238643 - AluY SINE Alu -5 306 1 869 228 22 22 chr15 19142100 19142332 -82238189 + L1M1 LINE L1 13 244 -7321 2239 90 17 7 chr15 19142433 19142722 -82237799 + AluSx SINE Alu 2 293 -19 1207 155 0 0 chr15 19142722 19142896 -82237625 + AluJb SINE Alu 134 307 -5 2238 114 0 7 chr15 19143017 19143314 -82237207 - AluSx SINE Alu -16 296 2 2319 123 0 3 chr15 19143432 19143740 -82236781 + AluSg SINE Alu 1 307 -3 403 243 195 5 chr15 19143766 19143868 -82236653 + L1ME2 LINE L1 5010 5091 -1055 2431 94 0 0 chr15 19143868 19144167 -82236354 + AluSx SINE Alu 1 299 -13 403 243 195 5 chr15 19144167 19144249 -82236272 + L1ME2 LINE L1 5091 5229 -917 1469 178 16 52 chr15 19144365 19144560 -82235961 - AluJb SINE Alu -14 298 116 1942 170 0 6 chr15 19144560 19144872 -82235649 + AluSx SINE Alu 1 310 -2 1469 178 16 52 chr15 19144872 19144985 -82235536 - AluJb SINE Alu -196 116 1 1861 248 112 6 chr15 19145030 19145658 -82234863 + L1ME2 LINE L1 5417 6110 -54 385 198 12 0 chr15 19145656 19145737 -82234784 + L1ME1 LINE L1 5487 5568 -598 * 445 117 0 0 chr15 19145747 19145824 -82234697 - AluS SINE Alu -4 306 230 1975 149 0 0 chr15 19146061 19146386 -82234135 - AluSx SINE Alu 0 325 1 722 126 24 31 chr15 19146387 19146514 -82234007 - AluJo/FLAM SINE Alu -185 127 2 1105 180 60 85 chr15 19146516 19146832 -82233689 + L1ME1 LINE L1 5552 5859 -307 2195 123 3 7 chr15 19146958 19147260 -82233261 + AluSq SINE Alu 1 301 -12 1333 172 121 8 chr15 19147373 19147505 -82233016 + AluSg SINE Alu 7 123 -187 2585 73 0 13 chr15 19147505 19147819 -82232702 + AluSx SINE Alu 3 312 0 1333 172 121 8 chr15 19147819 19147942 -82232579 + AluSg SINE Alu 123 291 -19 2352 90 0 0 chr15 19147950 19148239 -82232282 + AluSg SINE Alu 1 289 -21 810 293 56 23 chr15 19148328 19148788 -82231733 - MLT1C-int LTR MaLR -757 614 5 201 147 0 0 chr15 19148844 19148878 -82231643 + (TA)n Simple_repeat Simple_repeat 2 35 0 387 279 25 41 chr15 19148901 19149148 -82231373 - MLT2F LTR ERVL -49 614 292 3113 154 42 2 chr15 19149156 19149702 -82230819 + LTR24B LTR ERV1 2 569 -7 238 291 97 8 chr15 19149780 19149914 -82230607 - MLT2F LTR ERVL -517 146 1 2319 79 14 3 chr15 19149952 19150244 -82230277 + AluSx SINE Alu 1 295 -17 791 269 109 22 chr15 19150273 19150633 -82229888 - MLT1C LTR MaLR -7 460 69 708 145 53 0 chr15 19150633 19150764 -82229757 - MLT1A1 LTR MaLR 0 365 228 283 138 15 15 chr15 19151062 19151127 -82229394 + GA-rich Low_complexity Low_complexity 3 67 0 712 169 15 0 chr15 19151672 19151802 -82228719 + FLAM_C SINE Alu 1 132 -1 309 122 0 0 chr15 19151830 19151879 -82228642 + Ricksha DNA DNA 295 343 -1703 580 256 47 21 chr15 19151881 19152115 -82228406 + MLT2C2 LTR ERVL 1 240 -224 558 191 56 93 chr15 19152090 19152305 -82228216 + MLT1D LTR MaLR 7 213 -292 * 265 152 315 0 chr15 19155135 19155227 -82225294 + FLAM_C SINE Alu 1 121 -12 22 0 0 0 chr15 19155227 19155249 -82225272 + AT_rich Low_complexity Low_complexity 1 22 0 1982 57 0 0 chr15 19156210 19156439 -82224082 + AluY SINE Alu 1 229 -82 1392 194 123 5 chr15 19156443 19156824 -82223697 + Charlie4a DNA MER1_type 83 508 0 1828 208 2 45 chr15 19157734 19158133 -82222388 - MER77 LTR ERV1 -4 601 220 237 315 31 47 chr15 19158294 19158421 -82222100 + L2 LINE L2 3146 3270 -43 2023 145 9 9 chr15 19158563 19158900 -82221621 + MER1B DNA MER1_type 1 337 0 2246 117 0 7 chr15 19158924 19159223 -82221298 - AluSx SINE Alu -10 302 6 1141 200 90 10 chr15 19159227 19159429 -82221092 - L1MCa LINE L1 -2798 3628 3444 1644 110 141 0 chr15 19159429 19159692 -82220829 - AluSx SINE Alu -2 300 1 1141 200 90 10 chr15 19159692 19159965 -82220556 - L1MCa LINE L1 -2982 3444 855 590 286 102 79 chr15 19159985 19160328 -82220193 - MER77 LTR ERV1 -254 351 1 697 280 170 13 chr15 19160329 19160697 -82219824 + L1MC/D LINE L1 5254 5710 -2098 2156 125 0 3 chr15 19160697 19160992 -82219529 + AluSg SINE Alu 1 294 -16 697 280 170 13 chr15 19160992 19161083 -82219438 + L1MC/D LINE L1 5710 5785 -2023 1001 190 49 19 chr15 19161709 19162008 -82218513 - MER2 DNA MER2_type -2 343 1 24 53 0 0 chr15 19162104 19162142 -82218379 + AT_rich Low_complexity Low_complexity 1 38 0 677 125 39 55 chr15 19162513 19162641 -82217880 + FLAM_C SINE Alu 2 127 -16 1975 134 7 17 chr15 19162658 19162957 -82217564 + AluSx SINE Alu 3 298 -14 22 0 0 0 chr15 19163654 19163676 -82216845 + AT_rich Low_complexity Low_complexity 1 22 0 455 132 0 0 chr15 19163693 19163769 -82216752 + AluJ/FRAM SINE Alu 229 304 -8 585 139 0 0 chr15 19163769 19163855 -82216666 - MER2 DNA MER2_type -213 132 47 1585 273 50 7 chr15 19163955 19164417 -82216104 + L1M1 LINE L1 269 750 -6815 1319 141 69 40 chr15 19164417 19164693 -82215828 + LTR19A LTR ERV1 1 284 -202 8631 189 46 50 chr15 19164695 19164826 -82215695 + L1M1 LINE L1 2184 2314 -5251 402 174 0 14 chr15 19164826 19164922 -82215599 - AluS SINE Alu 0 302 230 8631 189 46 50 chr15 19164922 19165729 -82214792 + L1M1 LINE L1 2314 3122 -4443 1734 161 8 0 chr15 19165729 19165990 -82214531 + AluSx SINE Alu 35 297 -15 2481 81 0 0 chr15 19165996 19166293 -82214228 + AluY SINE Alu 1 297 -14 8631 189 46 50 chr15 19166293 19166790 -82213731 + L1M1 LINE L1 3127 3624 -3941 2129 127 10 10 chr15 19166790 19167098 -82213423 + AluSq SINE Alu 1 308 -5 8631 189 46 50 chr15 19167098 19167903 -82212618 + L1M1 LINE L1 3624 4430 -3135 1838 155 0 57 chr15 19167903 19168219 -82212302 + AluJb SINE Alu 1 298 -14 8631 189 46 50 chr15 19168219 19169450 -82211071 + L1M1 LINE L1 4430 5721 -1844 1069 134 6 0 chr15 19169450 19169607 -82210914 + AluSx SINE Alu 1 158 -154 2044 131 3 0 chr15 19177001 19177306 -82203215 + AluSq SINE Alu 1 306 -7 273 185 0 62 chr15 19177306 19177381 -82203140 - L1M4 LINE L1 -1532 4614 4545 432 273 118 68 chr15 19177412 19178093 -82202428 - L1M4 LINE L1 -1665 4481 3767 1219 153 0 40 chr15 19178121 19178349 -82202172 - AluJo SINE Alu -9 303 85 260 285 105 40 chr15 19178440 19178668 -82201853 - L1M4 LINE L1 -2467 3679 3437 1336 195 36 20 chr15 19178749 19179051 -82201470 - AluJb SINE Alu -4 308 2 462 159 0 65 chr15 19179432 19179539 -82200982 - AluJb SINE Alu -3 309 210 1948 134 0 28 chr15 19179550 19179871 -82200650 - AluSx SINE Alu 0 312 1 25 75 0 0 chr15 19179896 19179949 -82200572 + AT_rich Low_complexity Low_complexity 1 53 0 2262 75 3 0 chr15 19180673 19180966 -82199555 - AluY SINE Alu -12 299 6 1850 139 7 14 chr15 19181324 19181619 -82198902 + AluJb SINE Alu 5 297 -15 24 32 0 0 chr15 19182171 19182202 -82198319 + AT_rich Low_complexity Low_complexity 1 31 0 31 0 0 0 chr15 19182698 19182729 -82197792 + AT_rich Low_complexity Low_complexity 1 31 0 540 234 98 33 chr15 19182983 19183167 -82197354 - L1MC4a LINE L1 -1969 5839 5644 1481 119 155 0 chr15 19183169 19183420 -82197101 - AluY SINE Alu -7 304 15 289 338 89 19 chr15 19183443 19183656 -82196865 - L1MC4a LINE L1 -2156 5652 5425 696 239 41 82 chr15 19183687 19184005 -82196516 - L1MD2 LINE L1 -55 6304 6000 400 253 75 29 chr15 19184043 19184217 -82196304 - L1MC4a LINE L1 -2373 5435 5254 889 177 51 95 chr15 19184830 19185040 -82195481 + L1MB2 LINE L1 5900 6091 -80 874 146 0 0 chr15 19185040 19185163 -82195358 + FLAM_C SINE Alu 1 123 -10 889 177 51 95 chr15 19185163 19185241 -82195280 + L1MB2 LINE L1 6091 6171 0 1446 177 0 71 chr15 19185251 19185404 -82195117 + AluJb SINE Alu 1 122 -190 1574 81 28 0 chr15 19185404 19185615 -82194906 + AluSg/x SINE Alu 70 286 -24 1446 177 0 71 chr15 19185615 19185771 -82194750 + AluJb SINE Alu 122 288 -24 2135 100 16 13 chr15 19185907 19186085 -82194436 - AluSg SINE Alu 0 310 129 2176 100 0 13 chr15 19186085 19186395 -82194126 - AluSg SINE Alu -4 306 1 2135 100 16 13 chr15 19186395 19186525 -82193996 - AluSg SINE Alu -181 129 1 235 196 39 0 chr15 19186631 19186682 -82193839 - MER94 DNA DNA -81 53 1 2140 98 10 7 chr15 19186700 19187005 -82193516 - AluSc SINE Alu -2 307 2 5753 112 61 6 chr15 19189061 19189526 -82190995 - L1MA5A LINE L1 -2 6295 5857 213 39 0 0 chr15 19189526 19189552 -82190969 + (TA)n Simple_repeat Simple_repeat 2 27 0 5753 112 61 6 chr15 19189552 19190008 -82190513 - L1MA5A LINE L1 -440 5857 5320 2148 112 0 3 chr15 19190008 19190311 -82190210 - AluSq SINE Alu -11 302 1 2621 155 57 38 chr15 19190311 19190835 -82189686 - L1M2c LINE L1 -4886 1903 1370 481 118 0 129 chr15 19190836 19190872 -82189649 + AluS SINE Alu 2 41 -272 1919 145 7 0 chr15 19190872 19191162 -82189359 - AluSx SINE Alu -20 292 1 481 118 0 129 chr15 19191162 19191218 -82189303 + AluS SINE Alu 41 82 -231 1634 144 27 27 chr15 19191323 19191622 -82188899 - AluJb SINE Alu -11 301 3 2137 82 3 20 chr15 19191647 19191941 -82188580 + AluSq SINE Alu 1 289 -24 365 262 107 77 chr15 19191947 19192115 -82188406 - L1MCa LINE L1 -4352 2074 1902 1902 136 3 10 chr15 19192446 19192755 -82187766 - AluSx SINE Alu 0 312 6 2336 65 0 0 chr15 19193889 19194183 -82186338 + AluY SINE Alu 1 294 -17 322 214 111 79 chr15 19194238 19194364 -82186157 + L1ME4a LINE L1 5960 6089 -32 232 232 136 40 chr15 19194801 19194899 -82185622 - MIR SINE MIR -28 234 120 2099 93 31 0 chr15 19194899 19195188 -82185333 + AluSq SINE Alu 1 298 -15 232 232 136 40 chr15 19195188 19195214 -82185307 - MIR SINE MIR -142 120 98 899 158 0 0 chr15 19195254 19195387 -82185134 + FLAM_C SINE Alu 1 133 0 220 365 51 15 chr15 19195896 19196033 -82184488 + L2 LINE L2 3172 3313 0 1946 66 73 4 chr15 19196056 19196328 -82184193 - AluY SINE Alu -19 292 2 214 193 193 18 chr15 19196511 19196568 -82183953 + MIR SINE MIR 163 229 -33 470 314 88 18 chr15 19198274 19198548 -82181973 - MARNA DNA Mariner -168 418 126 1693 166 3 25 chr15 19199504 19199823 -82180698 + AluJo SINE Alu 1 312 0 704 136 0 0 chr15 19200468 19200571 -82179950 + FLAM_A SINE Alu 28 130 -12 470 314 136 34 chr15 19201394 19201805 -82178716 + L1MC5 LINE L1 7479 7931 -30 2130 88 7 17 chr15 19201813 19202110 -82178411 + AluSp SINE Alu 1 294 -19 2052 115 0 0 chr15 19202113 19202409 -82178112 + AluSx SINE Alu 1 296 -16 1766 140 25 3 chr15 19203249 19203534 -82176987 + AluSx SINE Alu 1 291 -21 1679 176 0 0 chr15 19203755 19204045 -82176476 + AluJb SINE Alu 1 290 -22 700 209 7 14 chr15 19204397 19204536 -82175985 + AluJo SINE Alu 2 139 -173 2240 89 0 13 chr15 19204539 19204852 -82175669 + AluSx SINE Alu 1 309 -3 290 239 23 23 chr15 19204878 19204966 -82175555 + L1M4 LINE L1 5010 5097 -1049 36 82 0 0 chr15 19205191 19205276 -82175245 + GC_rich Low_complexity Low_complexity 1 85 0 256 197 16 0 chr15 19206591 19206652 -82173869 - L1ME LINE L1 -264 5902 5841 334 238 30 109 chr15 19206978 19207028 -82173493 - L1MC4a LINE L1 -1965 5843 5791 2068 128 0 3 chr15 19207028 19207341 -82173180 - AluSx SINE Alu 0 312 1 334 238 30 109 chr15 19207341 19207492 -82173029 - L1MC4a LINE L1 -2017 5791 5658 2217 85 0 0 chr15 19207532 19207858 -82172663 - AluSq SINE Alu 0 330 5 871 208 38 0 chr15 19208000 19208183 -82172338 + L1M4 LINE L1 4130 4319 -1827 2349 73 3 0 chr15 19208193 19208493 -82172028 - AluSp SINE Alu -12 301 1 1486 169 59 53 chr15 19208586 19208923 -82171598 - MER44D DNA MER2_type 0 609 1 696 244 85 36 chr15 19208923 19208955 -82171566 + L1M4 LINE L1 4338 4367 -1779 2382 67 0 0 chr15 19208955 19209253 -82171268 + AluSg SINE Alu 1 298 -12 696 244 85 36 chr15 19209253 19209502 -82171019 + L1M4 LINE L1 4367 4633 -1513 225 156 16 47 chr15 19209515 19209579 -82170942 - L1ME1 LINE L1 0 6166 6105 337 213 0 0 chr15 19209590 19209644 -82170877 - Tigger2 DNA MER2_type -16 2702 2646 1934 105 7 20 chr15 19209644 19209938 -82170583 - AluSq SINE Alu -23 290 1 1339 62 150 0 chr15 19209945 19210138 -82170383 - AluSg/x SINE Alu -6 306 85 2112 151 16 13 chr15 19210177 19210549 -82169972 - Tigger2 DNA MER2_type -73 2645 2273 402 191 0 0 chr15 19210538 19210606 -82169915 - Tigger2 DNA MER2_type -2649 69 2 * 1891 127 10 10 chr15 19210663 19210963 -82169558 - AluSx SINE Alu -12 300 1 713 157 37 30 chr15 19210977 19211111 -82169410 - AluJo SINE Alu -176 136 2 2929 140 55 2 chr15 19211116 19211739 -82168782 - L1M2 LINE L1 -529 5762 5102 1012 166 5 7 chr15 19211752 19211960 -82168561 + L1MA6 LINE L1 5879 6076 -236 380 129 7 201 chr15 19211933 19212072 -82168449 + L1MB8 LINE L1 5927 6038 -140 * 1593 150 32 54 chr15 19212075 19212257 -82168264 - AluJb SINE Alu -6 306 132 2154 103 0 0 chr15 19212257 19212549 -82167972 - AluSx SINE Alu -12 300 9 1593 150 32 54 chr15 19212549 19212679 -82167842 - AluJb SINE Alu -180 132 1 2492 166 7 18 chr15 19212679 19212950 -82167571 - L1M2 LINE L1 -1131 5015 4750 2326 78 0 3 chr15 19212950 19213257 -82167264 - AluSx SINE Alu -6 306 1 2492 166 7 18 chr15 19213257 19213443 -82167078 - L1M2 LINE L1 -1396 4750 4563 277 54 0 0 chr15 19213483 19213520 -82167001 - L1M2 LINE L1 -1552 4594 4558 1456 167 6 63 chr15 19213523 19213705 -82166816 - AluJo SINE Alu -13 299 141 2057 114 9 19 chr15 19213705 19214020 -82166501 - AluSp SINE Alu -1 312 1 1456 167 6 63 chr15 19214020 19214154 -82166367 - AluJo SINE Alu -171 141 1 3061 195 27 104 chr15 19214154 19214326 -82166195 - L1M4 LINE L1 -1009 5137 4953 2195 83 0 0 chr15 19214326 19214616 -82165905 - AluY SINE Alu -21 290 1 3061 195 27 104 chr15 19214616 19215445 -82165076 - L1M4 LINE L1 -1193 4953 4213 830 226 62 34 chr15 19215479 19215805 -82164716 - L1MEc LINE L1 -3730 2416 2110 2315 154 42 27 chr15 19216802 19217210 -82163311 - MLT2D LTR ERVL 0 414 1 1996 104 0 0 chr15 19217246 19217526 -82162995 - AluSx SINE Alu -1 311 32 856 120 32 0 chr15 19217528 19217653 -82162868 - AluJo/FLAM SINE Alu -173 129 1 2055 148 44 31 chr15 19218800 19219021 -82161500 - MLT1B LTR MaLR 0 390 160 2123 65 3 77 chr15 19219021 19219344 -82161177 - AluSp SINE Alu -14 299 1 2055 148 44 31 chr15 19219344 19219507 -82161014 - MLT1B LTR MaLR -230 160 1 1226 214 65 0 chr15 19219745 19219985 -82160536 - Tigger3(Golem) DNA MER2_type 0 3028 2770 1817 117 0 0 chr15 19219985 19220232 -82160289 - AluSx SINE Alu -63 249 3 315 0 0 0 chr15 19220339 19220374 -82160147 + (CA)n Simple_repeat Simple_repeat 2 36 0 1249 106 17 0 chr15 19220374 19220554 -82159967 + L1MA7 LINE L1 5794 5976 -315 317 260 57 32 chr15 19220571 19220694 -82159827 + MIR3 SINE MIR 33 158 -50 564 127 15 8 chr15 19221002 19221136 -82159385 + (TG)n Simple_repeat Simple_repeat 1 135 0 572 176 8 8 chr15 19221240 19221365 -82159156 + L1MA8 LINE L1 6155 6279 -12 531 0 0 0 chr15 19221852 19221911 -82158610 + (TTATG)n Simple_repeat Simple_repeat 2 60 0 1834 107 59 0 chr15 19221911 19222182 -82158339 - AluSp SINE Alu -26 287 1 353 237 13 0 chr15 19222282 19222358 -82158163 - L1MC4 LINE L1 -184 7858 7782 2223 98 0 16 chr15 19222702 19223019 -82157502 + AluSp SINE Alu 1 312 -1 339 289 81 57 chr15 19223644 19223725 -82156796 + L1MC/D LINE L1 5290 5368 -2440 1727 166 7 7 chr15 19223725 19224026 -82156495 + AluJb SINE Alu 1 301 -11 339 289 81 57 chr15 19224026 19224084 -82156437 + L1MC/D LINE L1 5368 5423 -2385 1989 102 7 3 chr15 19224084 19224409 -82156112 + AluSx SINE Alu 1 326 0 339 289 81 57 chr15 19224409 19224478 -82156043 + L1MC/D LINE L1 5423 5505 -2303 2140 104 36 0 chr15 19227035 19227313 -82153208 + AluSq SINE Alu 16 303 -10 2532 61 0 0 chr15 19227757 19228051 -82152470 - AluY SINE Alu -17 294 1 1178 52 0 0 chr15 19228051 19228185 -82152336 - AluY SINE Alu -177 134 1 225 108 0 0 chr15 19228888 19228925 -82151596 + (CA)n Simple_repeat Simple_repeat 2 38 0 2096 122 38 0 chr15 19229183 19229470 -82151051 - AluSx SINE Alu -14 298 1 716 163 205 6 chr15 19231057 19231223 -82149298 - MLT1B LTR MaLR 0 390 192 2564 55 7 7 chr15 19231323 19231632 -82148889 - AluY SINE Alu -2 309 1 1730 151 46 57 chr15 19232674 19232730 -82147791 - L1MB3 LINE L1 -2 6181 6126 2181 104 0 20 chr15 19232730 19233028 -82147493 - AluSg SINE Alu -14 296 5 1730 151 46 57 chr15 19233028 19233395 -82147126 - L1MB3 LINE L1 -57 6126 5764 968 228 199 3 chr15 19234286 19234593 -82145928 - Tigger7 DNA MER2_type 0 2487 2121 1267 239 3 7 chr15 19234594 19234883 -82145638 - Tigger7 DNA MER2_type -2196 291 4 747 255 74 30 chr15 19234887 19235413 -82145108 - L1MDb LINE L1 -3630 2776 2222 650 153 0 27 chr15 19235426 19235537 -82144984 - FLAM_A SINE Alu -13 129 22 246 251 36 84 chr15 19235545 19235712 -82144809 - L1MDb LINE L1 -4170 2236 2078 1263 239 131 40 chr15 19236222 19237069 -82143452 - L1MDb LINE L1 -4779 1627 748 316 303 87 84 chr15 19238697 19238756 -82141765 - L1ME4a LINE L1 -168 5953 5896 2257 117 0 0 chr15 19238756 19239047 -82141474 - AluSx SINE Alu -21 291 1 316 303 87 84 chr15 19239047 19239078 -82141443 - L1ME4a LINE L1 -225 5896 5867 1958 145 13 7 chr15 19239078 19239381 -82141140 - AluJb SINE Alu -5 307 3 316 303 87 84 chr15 19239381 19239523 -82140998 - L1ME4a LINE L1 -254 5867 5716 2344 79 3 30 chr15 19239523 19239828 -82140693 + AluSx SINE Alu 1 297 -15 316 303 87 84 chr15 19239828 19239916 -82140605 - L1ME4a LINE L1 -405 5716 5630 2472 102 0 0 chr15 19241145 19241450 -82139071 - AluSx SINE Alu -7 305 1 1952 147 3 33 chr15 19244045 19244352 -82136169 + AluJo SINE Alu 1 298 -14 2040 124 17 7 chr15 19244357 19244648 -82135873 - AluSx SINE Alu -18 294 1 873 266 82 43 chr15 19244682 19245171 -82135350 - MLT1J LTR MaLR 0 511 4 216 0 0 0 chr15 19245825 19245849 -82134672 + (T)n Simple_repeat Simple_repeat 1 24 0 1831 159 6 41 chr15 19246463 19246778 -82133743 - AluJo SINE Alu 0 312 9 1707 177 10 13 chr15 19246780 19247085 -82133436 - AluJo SINE Alu -8 304 1 267 326 88 42 chr15 19247367 19247503 -82133018 + MER3 DNA MER1_type 2 151 -58 2329 93 3 19 chr15 19247503 19247813 -82132708 + AluSx SINE Alu 1 305 -7 267 326 88 42 chr15 19247813 19247869 -82132652 + MER3 DNA MER1_type 151 203 -6 * 294 62 0 42 chr15 19247867 19247915 -82132606 + MADE1 DNA Mariner 34 79 -1 533 330 28 1 chr15 19248440 19248730 -82131791 - L1ME3A LINE L1 -167 5995 5700 306 286 91 74 chr15 19248741 19249150 -82131371 - L1ME3A LINE L1 -513 5657 5257 1296 184 131 4 chr15 19249150 19249417 -82131104 - AluJo SINE Alu -1 301 1 306 286 91 74 chr15 19249417 19249467 -82131054 - L1ME3A LINE L1 -913 5257 5209 1401 183 39 10 chr15 19249467 19249779 -82130742 - L1MA9 LINE L1 0 6312 5992 306 286 91 74 chr15 19249779 19250609 -82129912 - L1ME3A LINE L1 -961 5209 4323 2306 90 6 22 chr15 19250609 19250921 -82129600 + AluSc SINE Alu 1 307 -2 2653 68 3 0 chr15 19250922 19251232 -82129289 + AluY SINE Alu 1 311 0 725 184 77 41 chr15 19251726 19251793 -82128728 - MER3 DNA MER1_type -6 203 140 2725 40 0 0 chr15 19251793 19252097 -82128424 + AluY SINE Alu 1 304 -7 725 184 77 41 chr15 19252097 19252225 -82128296 - MER3 DNA MER1_type -69 140 1 2018 135 0 14 chr15 19252277 19252573 -82127948 + AluJo SINE Alu 5 296 -16 309 317 10 0 chr15 19252695 19252799 -82127722 + MER63 DNA MER1_type 142 246 -815 610 246 108 10 chr15 19252837 19253032 -82127489 - MER58C DNA MER1_type 0 215 2 1712 185 45 0 chr15 19253293 19253623 -82126898 - MER7A DNA MER2_type -3 343 1 216 0 0 0 chr15 19253696 19253720 -82126801 + (T)n Simple_repeat Simple_repeat 1 24 0 2223 151 17 14 chr15 19254426 19254842 -82125679 - Tigger3(Golem) DNA MER2_type -336 2693 2277 495 280 16 0 chr15 19254814 19254939 -82125582 - Tigger3(Golem) DNA MER2_type -2902 127 1 * 1944 62 48 140 chr15 19254994 19255330 -82125191 - AluY SINE Alu -6 305 1 2595 50 0 3 chr15 19255453 19255753 -82124768 - AluY SINE Alu -12 299 1 2363 106 0 3 chr15 19255753 19256055 -82124466 - AluSc SINE Alu -8 301 1 2177 112 3 16 chr15 19256166 19256469 -82124052 - AluSq SINE Alu -14 299 1 313 213 53 75 chr15 19256604 19256698 -82123823 - L1MC4a LINE L1 -1632 6176 6085 1944 69 15 15 chr15 19256957 19257262 -82123259 - AluY SINE Alu 0 311 42 1555 167 17 43 chr15 19257743 19257899 -82122622 - AluJo SINE Alu -20 292 146 2459 81 0 10 chr15 19257899 19258209 -82122312 - AluSq SINE Alu -6 307 1 1555 167 17 43 chr15 19258209 19258352 -82122169 - AluJo SINE Alu -166 146 1 903 224 42 8 chr15 19258393 19258656 -82121865 - L1MA4 LINE L1 -2 6298 6027 887 169 7 0 chr15 19258880 19259016 -82121505 - AluJo SINE Alu -175 137 1 233 292 11 0 chr15 19259812 19259901 -82120620 - L1M4 LINE L1 -1014 5132 5043 265 251 190 39 chr15 19259983 19260262 -82120259 - L1M4 LINE L1 -1273 4873 4553 352 219 68 0 chr15 19260273 19260346 -82120175 - MER2 DNA MER2_type 0 345 268 1475 164 0 0 chr15 19260397 19260617 -82119904 - AluJb SINE Alu -92 220 1 3556 185 58 47 chr15 19260688 19260964 -82119557 - L1MB8 LINE L1 -27 6151 5879 2209 133 0 0 chr15 19260964 19261265 -82119256 - AluSx SINE Alu -11 301 1 3556 185 58 47 chr15 19261265 19261435 -82119086 - L1MB8 LINE L1 -299 5879 5712 1988 171 10 0 chr15 19261435 19261744 -82118777 - AluJo SINE Alu 0 312 1 3556 185 58 47 chr15 19261744 19262396 -82118125 - L1MB8 LINE L1 -466 5712 5068 2385 110 0 0 chr15 19262396 19262697 -82117824 - AluSx SINE Alu -11 301 1 3556 185 58 47 chr15 19262697 19262792 -82117729 - L1MB8 LINE L1 -1110 5068 4975 1636 234 88 47 chr15 19262792 19263373 -82117148 - MER77 LTR ERV1 0 605 1 3556 185 58 47 chr15 19263373 19263534 -82116987 - L1MB8 LINE L1 -1203 4975 4784 677 293 129 38 chr15 19263537 19263618 -82116903 - L1MB8 LINE L1 -2792 3354 3282 1597 106 204 4 chr15 19263618 19263873 -82116648 - AluSx SINE Alu -6 306 1 677 293 129 38 chr15 19263873 19263979 -82116542 - L1MB8 LINE L1 -2864 3282 3187 2269 112 0 10 chr15 19263979 19264317 -82116204 - AluSg SINE Alu 0 310 3 677 293 129 38 chr15 19264317 19264545 -82115976 - L1MB8 LINE L1 -2959 3187 2900 1197 154 0 16 chr15 19265059 19265247 -82115274 + AluJo SINE Alu 121 305 -7 386 293 0 15 chr15 19265630 19265763 -82114758 - AluSq/x SINE Alu -171 131 1 1928 143 4 4 chr15 19265933 19266212 -82114309 - AluJo SINE Alu -33 279 1 2388 103 0 0 chr15 19270182 19270484 -82110037 - AluSg SINE Alu -8 302 1 1935 117 28 24 chr15 19270532 19270822 -82109699 + AluJo SINE Alu 6 296 -16 879 158 168 11 chr15 19271343 19271533 -82108988 + AluJo SINE Alu 88 307 -5 207 69 0 0 chr15 19272318 19272347 -82108174 + (T)n Simple_repeat Simple_repeat 1 29 0 2475 97 3 0 chr15 19272397 19272706 -82107815 - AluSx SINE Alu -2 310 1 1670 164 0 36 chr15 19272733 19273013 -82107508 - AluJb SINE Alu -16 296 27 1778 151 14 17 chr15 19273025 19273316 -82107205 - AluJb SINE Alu -22 290 1 263 309 73 0 chr15 19274069 19274192 -82106329 - L1ME LINE L1 -393 5728 5597 662 147 217 7 chr15 19274752 19274895 -82105626 - AluSc SINE Alu -5 304 132 1054 106 56 0 chr15 19274895 19275037 -82105484 + AluSg/x SINE Alu 143 292 -18 2207 109 7 16 chr15 19275493 19275797 -82104724 + AluSx SINE Alu 1 301 -11 566 75 0 0 chr15 19276136 19276216 -82104305 + L1MA1 LINE L1 6223 6302 0 21 0 0 0 chr15 19276220 19276241 -82104280 + AT_rich Low_complexity Low_complexity 1 21 0 2387 92 3 0 chr15 19277129 19277434 -82103087 + AluSx SINE Alu 6 311 -1 1940 189 26 3 chr15 19277447 19277829 -82102692 - L1PBa LINE L1 -6472 391 1 435 310 59 34 chr15 19277846 19278085 -82102436 + L1M4c LINE L1 1111 1355 -5029 2657 43 0 0 chr15 19279188 19279490 -82101031 + AluY SINE Alu 1 302 -9 2353 109 0 3 chr15 19279545 19279847 -82100674 + AluSx SINE Alu 1 301 -11 2438 81 3 3 chr15 19279894 19280203 -82100318 + AluY SINE Alu 1 309 -2 1529 99 5 19 chr15 19280213 19280426 -82100095 + AluSc SINE Alu 1 210 -99 322 351 55 73 chr15 19280481 19281013 -82099508 + HAL1b LINE L1 59 580 -768 580 243 76 19 chr15 19281275 19281485 -82099036 - Charlie5 DNA MER1_type -32 2580 2359 739 267 67 16 chr15 19284392 19284707 -82095814 - L1MC4 LINE L1 -535 7507 7177 1489 130 0 0 chr15 19284722 19284929 -82095592 - AluSg/x SINE Alu -2 308 102 229 105 26 0 chr15 19285047 19285085 -82095436 - MLT1B LTR MaLR -318 72 34 1977 139 14 0 chr15 19285086 19285366 -82095155 - AluSx SINE Alu -26 286 3 2302 141 31 6 chr15 19285417 19285772 -82094749 - THE1B LTR MaLR 0 364 1 850 223 44 50 chr15 19285789 19285996 -82094525 - L1MC4a LINE L1 -1193 6615 6409 1800 173 0 33 chr15 19285996 19286118 -82094403 + AluJb SINE Alu 1 125 -187 2264 102 3 0 chr15 19286118 19286412 -82094109 - AluY SINE Alu -16 295 1 1800 173 0 33 chr15 19286412 19286595 -82093926 + AluJb SINE Alu 125 296 -16 850 223 44 50 chr15 19286595 19286705 -82093816 - L1MC4a LINE L1 -1399 6409 6300 1151 148 12 0 chr15 19286708 19286877 -82093644 + AluSg/x SINE Alu 133 303 -9 630 339 97 8 chr15 19286898 19287270 -82093251 + L1MEc LINE L1 55 459 -5937 2123 125 20 0 chr15 19287350 19287655 -82092866 + AluSx SINE Alu 1 311 -1 2208 114 0 19 chr15 19287901 19288209 -82092312 - AluSq SINE Alu -11 302 1 975 313 111 25 chr15 19288209 19288822 -82091699 + L1MEc LINE L1 691 1394 -4981 371 228 66 78 chr15 19289279 19289486 -82091035 - MER21B LTR ERV1 -252 353 149 304 229 57 14 chr15 19289613 19289683 -82090838 + HAL1 LINE L1 2272 2344 -163 1674 150 23 19 chr15 19289683 19289820 -82090701 + AluJo SINE Alu 1 141 -171 2486 77 0 0 chr15 19289820 19290117 -82090404 + AluY SINE Alu 1 297 -14 1674 150 23 19 chr15 19290117 19290245 -82090276 + AluJo SINE Alu 141 267 -45 300 190 17 147 chr15 19290262 19290378 -82090143 - L1MCa LINE L1 -4362 2064 1964 2434 93 3 3 chr15 19290544 19290855 -82089666 + AluSp SINE Alu 1 311 -2 2428 92 0 0 chr15 19293686 19293991 -82086530 - AluSx SINE Alu -7 305 1 2093 110 7 33 chr15 19294802 19295102 -82085419 - AluSx SINE Alu -8 304 13 1998 133 23 13 chr15 19296065 19296374 -82084147 - AluSx SINE Alu 0 312 1 1953 135 7 10 chr15 19296386 19296683 -82083838 - AluJb SINE Alu -16 296 1 215 226 119 48 chr15 19297122 19297206 -82083315 - MIR SINE MIR -112 150 61 484 298 63 0 chr15 19297889 19298047 -82082474 - MER68 LTR ERV1 0 562 395 2178 244 47 8 chr15 19298047 19298690 -82081831 + L1MEc LINE L1 2397 3064 -3151 242 200 55 0 chr15 19298727 19298782 -82081739 + L1MEc LINE L1 3040 3097 -3118 2167 118 55 22 chr15 19298850 19299213 -82081308 + THE1C LTR MaLR 1 375 0 8585 109 122 43 chr15 19299213 19299376 -82081145 + THE1C-int LTR MaLR 1 150 -1430 2296 114 0 7 chr15 19299376 19299683 -82080838 - AluSg SINE Alu -5 305 1 8585 109 122 43 chr15 19299683 19300984 -82079537 + THE1C-int LTR MaLR 150 1580 0 2044 134 21 54 chr15 19300984 19301295 -82079226 + THE1C LTR MaLR 1 298 -77 2544 70 0 0 chr15 19301295 19301597 -82078924 - AluY SINE Alu -9 302 1 2044 134 21 54 chr15 19301597 19301673 -82078848 + THE1C LTR MaLR 298 375 0 777 173 0 0 chr15 19302477 19302610 -82077911 - FLAM_C SINE Alu 0 133 1 304 275 200 38 chr15 19304651 19304811 -82075710 - L1 LINE L1 -2102 4044 3859 252 100 0 0 chr15 19305238 19305278 -82075243 + (CACCC)n Simple_repeat Simple_repeat 5 44 0 434 244 76 8 chr15 19305555 19305674 -82074847 + MER3 DNA MER1_type 81 207 -2 320 291 103 29 chr15 19305844 19305971 -82074550 - L1ME LINE L1 -715 5455 5310 2496 75 0 0 chr15 19305971 19306278 -82074243 - AluY SINE Alu -4 307 1 320 291 103 29 chr15 19306278 19306325 -82074196 - L1ME LINE L1 -860 5310 5268 280 350 25 2 chr15 19306480 19306701 -82073820 - L1ME LINE L1 -1036 5110 4882 1245 211 64 49 chr15 19307695 19308084 -82072437 - MSTD LTR MaLR 0 396 2 2155 94 42 3 chr15 19308286 19308572 -82071949 - AluSp SINE Alu -16 297 1 444 293 135 36 chr15 19308766 19308988 -82071533 + HAL1 LINE L1 1317 1560 -947 456 296 57 40 chr15 19308988 19309289 -82071232 + MER46C DNA MER2_type 3 308 -30 24 0 0 0 chr15 19309477 19309501 -82071020 + AT_rich Low_complexity Low_complexity 1 24 0 225 221 58 96 chr15 19309974 19310078 -82070443 - MIR SINE MIR -87 175 76 283 333 41 65 chr15 19311083 19311206 -82069315 + MIR3 SINE MIR 67 186 -22 216 135 0 0 chr15 19311237 19311274 -82069247 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 233 29 29 0 chr15 19311274 19311308 -82069213 + (TG)n Simple_repeat Simple_repeat 2 36 0 2231 134 27 3 chr15 19311506 19311841 -82068680 + MER61A LTR ERV1 1 343 0 1113 204 7 57 chr15 19311841 19312140 -82068381 + MER61A-int LTR ERV1 1 284 -4933 1373 100 0 17 chr15 19312247 19312427 -82068094 - AluSq SINE Alu -136 177 1 26 30 0 0 chr15 19312555 19312588 -82067933 + AT_rich Low_complexity Low_complexity 1 33 0 3511 163 73 9 chr15 19313845 19314506 -82066015 + L1PBa LINE L1 144 846 -6017 395 182 39 0 chr15 19314609 19314686 -82065835 + LTR22B LTR ERVK 413 492 0 2361 111 8 17 chr15 19314688 19315039 -82065482 + HERVK22 LTR ERVK 3 350 -6487 3777 32 0 0 chr15 19315067 19315509 -82065012 - L1PA2 LINE L1 0 6155 5714 4236 96 2 3 chr15 19315509 19316090 -82064431 - HERVK22 LTR ERVK -1327 5510 4929 1504 223 74 43 chr15 19316190 19316647 -82063874 + L1ME4a LINE L1 4801 5276 -890 2235 92 0 39 chr15 19316647 19316953 -82063568 + AluSx SINE Alu 1 294 -18 1504 223 74 43 chr15 19316953 19317303 -82063218 + L1ME4a LINE L1 5276 5614 -552 462 108 0 0 chr15 19317405 19317470 -82063051 - Alu SINE Alu -245 65 1 3276 39 34 17 chr15 19318310 19318775 -82061746 - L1P LINE L1 -2026 4120 3648 1328 30 0 6 chr15 19318771 19318939 -82061582 + L1PA4 LINE L1 5850 6016 -139 * 575 330 29 0 chr15 19319327 19319536 -82060985 + MER58A DNA MER1_type 6 220 -4 2198 161 39 3 chr15 19319635 19320021 -82060500 + MER57A LTR ERV1 1 400 -3 244 274 13 51 chr15 19320305 19320462 -82060059 - L1M4 LINE L1 -2296 3850 3700 9240 67 99 5 chr15 19320719 19322057 -82058464 - L1P LINE L1 -4683 1463 1 898 136 7 0 chr15 19322058 19322198 -82058323 + HERVK22 LTR ERVK 339 479 -6358 401 79 0 0 chr15 19323382 19323445 -82057076 - SVA Other Other -820 566 504 1229 137 6 0 chr15 19323946 19324121 -82056400 + AluSq SINE Alu 1 176 -137 1038 189 62 8 chr15 19324221 19324464 -82056057 - L1P LINE L1 -1762 4384 4129 1938 127 16 13 chr15 19324464 19324779 -82055742 - MER49 LTR ERV1 -599 324 9 2190 61 3 54 chr15 19325196 19325511 -82055010 - AluY SINE Alu 0 300 1 1205 143 25 94 chr15 19325760 19326046 -82054475 - L1M2 LINE L1 -520 5780 5515 378 301 108 75 chr15 19326278 19326704 -82053817 + L1ME4a LINE L1 5650 6089 -32 2424 67 0 7 chr15 19328408 19328706 -82051815 - AluY SINE Alu -15 296 1 230 242 105 42 chr15 19328707 19328802 -82051719 - MIR SINE MIR -87 121 21 2298 82 0 26 chr15 19328912 19329075 -82051446 - AluY SINE Alu -16 295 142 2206 98 0 20 chr15 19329075 19329381 -82051140 - AluSg SINE Alu -10 300 1 2298 82 0 26 chr15 19329381 19329520 -82051001 - AluY SINE Alu -169 142 1 395 277 77 51 chr15 19330207 19330630 -82049891 - MER41E LTR ERV1 -59 453 148 193 360 120 0 chr15 19330920 19331045 -82049476 - L2 LINE L2 0 3272 3133 734 268 122 20 chr15 19331188 19331483 -82049038 + L2 LINE L2 2989 3313 0 924 268 92 68 chr15 19331762 19332588 -82047933 + HAL1 LINE L1 446 1291 -1216 3001 123 69 2 chr15 19332658 19333163 -82047358 - L1MC1 LINE L1 -1 6332 5794 216 0 0 0 chr15 19333263 19333287 -82047234 + (A)n Simple_repeat Simple_repeat 1 24 0 1703 113 117 25 chr15 19333704 19333838 -82046683 - AluSq SINE Alu -14 299 179 2568 62 0 10 chr15 19333838 19334146 -82046375 - AluY SINE Alu -4 307 3 1703 113 117 25 chr15 19334146 19334285 -82046236 - AluSq SINE Alu -134 179 1 383 247 47 40 chr15 19334329 19334479 -82046042 + L1MC5 LINE L1 7539 7689 -272 1605 173 43 56 chr15 19334635 19334823 -82045698 - L1PA16 LINE L1 -27 6139 5957 1864 120 25 11 chr15 19334823 19334998 -82045523 - AluJb SINE Alu -2 310 128 2519 57 0 10 chr15 19334998 19335297 -82045224 - AluY SINE Alu -15 296 1 1864 120 25 11 chr15 19335297 19335404 -82045117 - AluJb SINE Alu -184 128 24 1605 173 43 56 chr15 19335404 19335590 -82044931 - L1PA16 LINE L1 -209 5957 5770 469 98 0 0 chr15 19335692 19335753 -82044768 - Alu SINE Alu -256 62 2 2227 78 0 0 chr15 19335797 19336066 -82044455 + AluY SINE Alu 30 298 -13 2143 97 55 0 chr15 19336660 19336950 -82043571 + AluSg SINE Alu 1 306 -4 388 77 0 0 chr15 19337079 19337136 -82043385 - L1PB4 LINE L1 -210 5951 5895 270 128 0 0 chr15 19337137 19337176 -82043345 + L1PB4 LINE L1 5954 5992 -164 482 101 0 0 chr15 19337177 19337246 -82043275 - MER50 LTR ERV1 -167 567 499 584 95 19 38 chr15 19337343 19337448 -82043073 + L1PB4 LINE L1 6053 6155 -1 217 265 20 0 chr15 19337656 19337705 -82042816 + L2 LINE L2 3196 3245 -27 2239 93 28 0 chr15 19337712 19338003 -82042518 + AluSp SINE Alu 1 299 -14 458 162 81 0 chr15 19338003 19338102 -82042419 + FLAM_C SINE Alu 34 140 -3 1268 130 27 45 chr15 19338246 19338336 -82042185 + MER50 LTR ERV1 504 594 -140 2128 122 3 0 chr15 19338336 19338623 -82041898 + AluSx SINE Alu 5 292 -20 1268 130 27 45 chr15 19338623 19338755 -82041766 + MER50 LTR ERV1 594 722 -12 1870 156 25 15 chr15 19338755 19339081 -82041440 + MER50-int LTR ERV1 7 335 -6870 2109 97 17 3 chr15 19339136 19339424 -82041097 + AluSq SINE Alu 1 292 -21 2368 77 0 10 chr15 19339628 19339927 -82040594 + AluY SINE Alu 1 296 -15 2068 115 14 10 chr15 19339969 19340264 -82040257 + AluSx SINE Alu 1 296 -16 2417 61 3 10 chr15 19340264 19340558 -82039963 + AluY SINE Alu 1 293 -18 1314 101 0 0 chr15 19340567 19340735 -82039786 + AluSg/x SINE Alu 133 300 -12 282 155 69 0 chr15 19340799 19340857 -82039664 + L1ME4a LINE L1 6059 6120 -1 789 189 0 0 chr15 19341172 19341304 -82039217 + FLAM_C SINE Alu 2 133 0 27 49 0 0 chr15 19341318 19341359 -82039162 + AT_rich Low_complexity Low_complexity 1 41 0 1671 145 53 18 chr15 19341553 19341835 -82038686 + AluJo SINE Alu 1 292 -20 1706 150 63 3 chr15 19343243 19343577 -82036944 - L1MB3 LINE L1 -4 6179 5826 2105 193 23 2 chr15 19343636 19344071 -82036450 + L1 LINE L1 4575 5018 -1128 1813 128 0 4 chr15 19344071 19344336 -82036185 + AluSx SINE Alu 39 302 -10 261 0 0 0 chr15 19344880 19344909 -82035612 + (TA)n Simple_repeat Simple_repeat 2 30 0 2236 108 0 7 chr15 19344927 19345223 -82035298 - AluSg SINE Alu -16 294 1 22 0 0 0 chr15 19345482 19345504 -82035017 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr15 19345787 19345815 -82034706 + AT_rich Low_complexity Low_complexity 1 28 0 341 306 121 42 chr15 19346955 19347507 -82033014 + HAL1b LINE L1 293 888 -460 31 58 0 0 chr15 19347765 19347817 -82032704 + AT_rich Low_complexity Low_complexity 1 52 0 23 92 0 0 chr15 19347948 19348013 -82032508 + AT_rich Low_complexity Low_complexity 1 65 0 259 286 62 51 chr15 19348170 19348348 -82032173 - L1ME LINE L1 -5879 191 12 2349 86 0 3 chr15 19349364 19349658 -82030863 + AluY SINE Alu 1 295 -16 282 29 0 0 chr15 19349658 19349693 -82030828 + (CATA)n Simple_repeat Simple_repeat 2 36 0 308 244 126 0 chr15 19350677 19350812 -82029709 - MER103 DNA DNA -2 164 13 514 249 83 28 chr15 19351134 19351351 -82029170 - L1MC/D LINE L1 -2326 5482 5254 343 274 139 30 chr15 19351676 19351877 -82028644 - L1MC/D LINE L1 -1300 4846 4624 2548 61 0 0 chr15 19351937 19352232 -82028289 - AluY SINE Alu -16 295 1 764 206 23 29 chr15 19352247 19352422 -82028099 - FAM SINE Alu 0 175 2 656 201 61 0 chr15 19353313 19353477 -82027044 - MER3 DNA MER1_type -30 179 6 447 225 81 38 chr15 19353854 19354014 -82026507 + L1MC5 LINE L1 7745 7911 -50 229 219 0 16 chr15 19354486 19354550 -82025971 + MIR SINE MIR 170 232 -30 564 144 136 16 chr15 19354694 19354819 -82025702 - MER20 DNA MER1_type 0 219 80 1372 136 219 0 chr15 19354833 19355075 -82025446 + AluJb SINE Alu 1 295 -7 435 219 8 62 chr15 19356406 19356534 -82023987 - L1MEd LINE L1 -4916 1203 1083 2034 88 58 49 chr15 19356550 19356858 -82023663 - AluSq SINE Alu -2 311 1 770 227 194 33 chr15 19356862 19357362 -82023159 - MLT1E2 LTR MaLR 0 626 2 1681 159 48 27 chr15 19358258 19358553 -82021968 + AluJo SINE Alu 1 301 -11 677 172 35 48 chr15 19360566 19360711 -82019810 + MER106B DNA MER1_type 904 1046 -13 250 268 204 14 chr15 19363190 19363332 -82017189 - MIR SINE MIR -1 261 93 2530 58 0 0 chr15 19363374 19363666 -82016855 - AluY SINE Alu -18 293 2 1119 129 13 0 chr15 19363771 19363926 -82016595 + AluSg/x SINE Alu 135 291 -21 311 311 105 16 chr15 19363926 19364116 -82016405 + HAL1 LINE L1 127 333 -2174 248 213 200 12 chr15 19364242 19364322 -82016199 + HAL1 LINE L1 590 684 -1823 2536 57 3 0 chr15 19364345 19364642 -82015879 + AluY SINE Alu 1 298 -13 233 258 0 34 chr15 19365096 19365185 -82015336 + L1ME LINE L1 298 383 -5687 1846 162 6 16 chr15 19365415 19365730 -82014791 + AluSx SINE Alu 1 312 0 1222 136 0 0 chr15 19365730 19365907 -82014614 + AluJb SINE Alu 134 310 -2 1206 238 98 27 chr15 19366169 19366451 -82014070 + HAL1 LINE L1 1030 1290 -1217 2448 84 0 0 chr15 19366451 19366749 -82013772 + AluSq SINE Alu 1 298 -15 1206 238 98 27 chr15 19366749 19366762 -82013759 + HAL1 LINE L1 1290 1301 -1206 1735 167 21 10 chr15 19366762 19367050 -82013471 + AluSx SINE Alu 1 291 -21 1206 238 98 27 chr15 19367050 19367722 -82012799 + HAL1 LINE L1 1301 2150 -357 316 253 0 0 chr15 19367762 19367849 -82012672 + HAL1 LINE L1 2278 2364 -143 1998 122 40 3 chr15 19368479 19368775 -82011746 + AluSx SINE Alu 1 307 -5 2541 74 0 0 chr15 19369207 19369518 -82011003 + AluY SINE Alu 1 311 0 2160 123 13 0 chr15 19369595 19369903 -82010618 - AluSx SINE Alu 0 312 1 2455 76 0 3 chr15 19370385 19370687 -82009834 - AluY SINE Alu -10 301 1 22 0 0 0 chr15 19370823 19370845 -82009676 + AT_rich Low_complexity Low_complexity 1 22 0 2537 82 0 0 chr15 19370940 19371244 -82009277 - AluSx SINE Alu -8 304 1 306 305 89 39 chr15 19371268 19371343 -82009178 - L2 LINE L2 -33 3280 3210 2312 81 0 33 chr15 19371343 19371650 -82008871 - AluSx SINE Alu -15 297 1 306 305 89 39 chr15 19371650 19371777 -82008744 - L2 LINE L2 -103 3210 3068 295 197 135 16 chr15 19371927 19372059 -82008462 - L1M2 LINE L1 -587 5575 5414 302 315 16 31 chr15 19372123 19372250 -82008271 - L1M4 LINE L1 -846 5300 5176 1094 199 93 31 chr15 19372627 19372918 -82007603 - MLT1F LTR MaLR -213 329 21 883 282 35 47 chr15 19372935 19373339 -82007182 + L2 LINE L2 2910 3308 -5 2212 87 13 20 chr15 19373370 19373668 -82006853 - AluSp SINE Alu -17 296 1 2241 87 13 10 chr15 19374055 19374353 -82006168 - AluSq SINE Alu -14 299 1 1804 269 92 2 chr15 19374451 19375083 -82005438 + MER20B DNA MER1_type 34 722 -61 2235 77 50 10 chr15 19375635 19375933 -82004588 + AluY SINE Alu 1 310 -1 1923 162 0 16 chr15 19376674 19376988 -82003533 - AluJo SINE Alu -3 309 1 255 197 26 40 chr15 19377608 19377684 -82002837 - MIR SINE MIR -115 147 73 213 39 0 0 chr15 19378077 19378103 -82002418 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 2167 96 3 3 chr15 19378103 19378385 -82002136 - AluSx SINE Alu -30 282 1 774 177 67 34 chr15 19378392 19378440 -82002081 - L1M4 LINE L1 -821 5325 5280 2179 106 13 3 chr15 19378440 19378742 -82001779 - AluSq SINE Alu -7 306 2 774 177 67 34 chr15 19378742 19378902 -82001619 - L1M4 LINE L1 -866 5280 5110 409 206 0 0 chr15 19378903 19378971 -82001550 - AluS SINE Alu -233 68 1 763 177 35 91 chr15 19378972 19379077 -82001444 - L1M4 LINE L1 -1716 4430 4321 2359 70 0 10 chr15 19379077 19379379 -82001142 - AluY SINE Alu -12 299 1 2242 84 3 0 chr15 19379383 19379681 -82000840 - AluSq SINE Alu -13 300 2 2190 100 3 13 chr15 19379689 19379998 -82000523 - AluSx SINE Alu -6 306 1 763 177 35 91 chr15 19379998 19380110 -82000411 - L1M4 LINE L1 -1835 4311 4212 2167 109 3 0 chr15 19380110 19380413 -82000108 + AluSx SINE Alu 2 305 -7 2179 98 3 0 chr15 19380413 19380709 -81999812 + AluSg SINE Alu 1 297 -13 2137 91 3 10 chr15 19381602 19381899 -81998622 - AluSx SINE Alu -17 295 1 24 32 0 0 chr15 19382559 19382590 -81997931 + AT_rich Low_complexity Low_complexity 1 31 0 218 287 92 46 chr15 19383399 19383486 -81997035 - L2 LINE L2 0 3272 3182 454 250 31 31 chr15 19383649 19383809 -81996712 + MLT1H LTR MaLR 98 257 -292 276 191 90 34 chr15 19384024 19384113 -81996408 + L1MC5 LINE L1 7845 7994 -1 2242 70 3 13 chr15 19384222 19384520 -81996001 + AluY SINE Alu 1 295 -16 2047 132 7 3 chr15 19385230 19385540 -81994981 - AluSx SINE Alu -1 311 1 463 217 0 0 chr15 19385595 19385687 -81994834 + FLAM_A SINE Alu 39 130 -12 2334 93 0 0 chr15 19385986 19386299 -81994222 + AluSp SINE Alu 1 313 0 2011 117 3 3 chr15 19386322 19386620 -81993901 + AluSg SINE Alu 1 298 -12 2108 111 0 0 chr15 19386879 19387176 -81993345 + AluSc SINE Alu 1 297 -12 2167 78 7 14 chr15 19387180 19387476 -81993045 + AluY SINE Alu 1 294 -17 1445 222 90 41 chr15 19387477 19387898 -81992623 + L1ME2 LINE L1 4740 5139 -1007 2131 92 0 44 chr15 19387898 19388041 -81992480 + AluSg SINE Alu 1 149 -161 2028 127 0 3 chr15 19388041 19388340 -81992181 + AluSx SINE Alu 1 298 -14 2379 76 0 0 chr15 19388340 19388643 -81991878 + AluY SINE Alu 1 303 -8 2131 92 0 44 chr15 19388643 19388815 -81991706 + AluSg SINE Alu 147 303 -7 1445 222 90 41 chr15 19388815 19388902 -81991619 + L1ME2 LINE L1 5139 5273 -873 182 222 19 0 chr15 19388920 19388974 -81991547 + (TA)n Simple_repeat Simple_repeat 1 55 0 344 160 0 27 chr15 19389014 19389062 -81991459 + Alu SINE Alu 2 29 -274 1962 115 0 36 chr15 19389062 19389367 -81991154 + AluSx SINE Alu 1 294 -18 344 160 0 27 chr15 19389367 19389387 -81991134 + Alu SINE Alu 29 48 -255 1436 223 67 16 chr15 19389393 19389766 -81990755 + L1ME2 LINE L1 5773 6164 0 471 209 18 27 chr15 19389799 19389909 -81990612 + L1MA10 LINE L1 6222 6330 -4 2269 97 0 0 chr15 19389909 19390207 -81990314 - AluSg SINE Alu -12 298 1 403 208 24 7 chr15 19390464 19390561 -81989960 - AluJ/FLAM SINE Alu -219 83 1 1038 202 179 22 chr15 19390655 19391052 -81989469 + LTR53 LTR ERVL 1 519 0 216 132 105 0 chr15 19392108 19392146 -81988375 - L2 LINE L2 -10 3262 3221 204 67 0 0 chr15 19392296 19392326 -81988195 + (TTG)n Simple_repeat Simple_repeat 1 30 0 734 239 6 12 chr15 19392326 19392489 -81988032 - AluJo SINE Alu -33 279 118 1983 108 18 0 chr15 19392512 19392798 -81987723 - AluSg SINE Alu -19 291 1 949 97 8 0 chr15 19393080 19393214 -81987307 + AluSq/x SINE Alu 1 135 -178 1731 231 55 4 chr15 19393316 19393767 -81986754 - L1M4 LINE L1 -2001 4145 3672 1441 155 109 53 chr15 19393767 19394051 -81986470 - AluSx SINE Alu -2 300 1 515 189 47 142 chr15 19394115 19394343 -81986178 + L1MC4 LINE L1 7708 7891 -151 968 205 85 0 chr15 19394343 19394543 -81985978 + MER20 DNA MER1_type 1 217 -2 515 189 47 142 chr15 19394543 19394673 -81985848 + L1MC4 LINE L1 7891 8032 -10 798 69 8 10 chr15 19394913 19395160 -81985361 + AluY SINE Alu 1 303 -8 297 255 71 20 chr15 19395956 19396054 -81984467 + LTR52 LTR ERVL 4 106 -315 209 200 14 29 chr15 19396071 19396141 -81984380 + A-rich Low_complexity Low_complexity 4 72 0 1951 138 0 3 chr15 19396746 19397044 -81983477 - AluSx SINE Alu -15 297 1 1793 149 14 0 chr15 19397793 19398088 -81982433 - AluJb SINE Alu -13 299 1 2202 70 3 23 chr15 19399357 19399656 -81980865 - AluSp SINE Alu -20 293 1 1935 127 14 0 chr15 19399656 19399947 -81980574 - AluSx SINE Alu -17 295 1 2008 147 0 0 chr15 19400003 19400309 -81980212 - AluSx SINE Alu -6 306 1 564 266 157 4 chr15 19400397 19400444 -81980077 + L1MC4 LINE L1 7037 7075 -813 1817 163 0 3 chr15 19400444 19400738 -81979783 + AluJo SINE Alu 1 293 -19 564 266 157 4 chr15 19400738 19400933 -81979588 + L1MC4 LINE L1 7075 7389 -499 376 265 23 45 chr15 19401243 19401326 -81979195 + L1M4b LINE L1 14 97 -6762 2021 95 0 21 chr15 19401326 19401610 -81978911 + AluY SINE Alu 1 278 -33 198 0 0 0 chr15 19401610 19401632 -81978889 + (CA)n Simple_repeat Simple_repeat 1 22 0 376 265 23 45 chr15 19401632 19401679 -81978842 + L1M4b LINE L1 95 142 -6717 * 586 149 39 0 chr15 19401676 19401809 -81978712 - L1M4 LINE L1 -2837 3309 3167 1088 133 0 12 chr15 19401812 19401977 -81978544 - AluSg/x SINE Alu -14 296 134 1079 157 0 0 chr15 19403022 19403194 -81977327 - AluSp SINE Alu -6 307 136 465 206 277 37 chr15 19403305 19403450 -81977071 - L1MC3 LINE L1 -169 7739 7630 2057 98 7 0 chr15 19403450 19403746 -81976775 - AluY SINE Alu -13 298 1 465 206 277 37 chr15 19403746 19403844 -81976677 - L1MC3 LINE L1 -278 7630 7344 291 200 0 71 chr15 19404984 19405124 -81975397 + C-rich Low_complexity Low_complexity 4 133 0 267 31 0 0 chr15 19405262 19405294 -81975227 + (CCG)n Simple_repeat Simple_repeat 3 34 0 328 251 16 64 chr15 19405357 19405544 -81974977 + G-rich Low_complexity Low_complexity 3 180 0 2373 68 0 0 chr15 19405869 19406180 -81974341 + AluY SINE Alu 1 311 0 22 56 0 0 chr15 19406208 19406244 -81974277 + AT_rich Low_complexity Low_complexity 1 36 0 793 76 9 0 chr15 19406537 19406642 -81973879 - AluSq/x SINE Alu -205 107 2 1404 158 41 21 chr15 19406682 19406973 -81973548 + AluJo SINE Alu 1 297 -15 2124 64 3 71 chr15 19407034 19407360 -81973161 + AluY SINE Alu 1 304 -7 437 263 89 0 chr15 19407398 19407577 -81972944 - HAL1b LINE L1 -183 1165 971 1644 141 16 4 chr15 19407585 19407841 -81972680 + AluJb SINE Alu 1 259 -53 2239 75 7 0 chr15 19407964 19408259 -81972262 + AluSq SINE Alu 1 297 -16 609 234 208 19 chr15 19408504 19408773 -81971748 - L1MA9 LINE L1 -36 6276 5957 223 273 208 26 chr15 19408958 19409112 -81971409 - MIR SINE MIR 0 262 81 2291 71 0 7 chr15 19409171 19409480 -81971041 + AluSx SINE Alu 1 307 -5 1475 167 29 0 chr15 19409551 19409832 -81970689 + AluJb SINE Alu 1 289 -23 2273 67 0 0 chr15 19411413 19411712 -81968809 + AluY SINE Alu 1 299 -12 2183 85 7 0 chr15 19411722 19412027 -81968494 + AluSg SINE Alu 1 307 -3 1959 63 0 12 chr15 19412298 19412450 -81968071 - AluSc SINE Alu -26 283 134 2269 70 3 13 chr15 19412450 19412748 -81967773 - AluSg SINE Alu -15 295 1 1959 63 0 12 chr15 19412748 19412848 -81967673 - AluSc SINE Alu -175 134 34 428 119 415 0 chr15 19413483 19413601 -81966920 + MLT1H LTR MaLR 1 167 -382 355 227 76 42 chr15 19413709 19413828 -81966693 + MLT1H LTR MaLR 427 549 0 1315 103 0 73 chr15 19413862 19414066 -81966455 + MER1B DNA MER1_type 151 339 0 820 199 51 0 chr15 19414421 19414577 -81965944 + L1ME1 LINE L1 5526 5689 -475 2019 91 16 26 chr15 19414577 19414885 -81965636 + AluY SINE Alu 1 305 -6 966 279 20 26 chr15 19414891 19415239 -81965282 + L1ME1 LINE L1 5816 6161 -5 8589 60 7 10 chr15 19415533 19416607 -81963914 + MER11C LTR ERVK 1 1071 0 2089 220 45 6 chr15 19416861 19417347 -81963174 + MLT1D LTR MaLR 1 505 0 2201 82 3 3 chr15 19417624 19417917 -81962604 - AluSp SINE Alu -20 293 1 1052 116 107 28 chr15 19418418 19418633 -81961888 + AluJo SINE Alu 81 312 0 2274 97 0 3 chr15 19418900 19419208 -81961313 - AluSg SINE Alu -3 307 1 216 0 0 0 chr15 19419210 19419234 -81961287 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2121 99 3 0 chr15 19419234 19419517 -81961004 - AluSp SINE Alu -29 284 1 1912 142 3 7 chr15 19419565 19419868 -81960653 - AluSx SINE Alu -10 302 1 279 324 27 26 chr15 19420885 19421048 -81959473 - MIR SINE MIR -26 182 23 1868 177 42 0 chr15 19424402 19424736 -81955785 + MER7A DNA MER2_type 1 346 0 1390 74 69 0 chr15 19426271 19426460 -81954061 + AluSg SINE Alu 1 202 -108 907 114 15 0 chr15 19426866 19426998 -81953523 - AluSg/x SINE Alu -20 290 157 607 217 56 35 chr15 19427092 19427235 -81953286 - LTR8 LTR ERV1 -545 146 1 1454 123 0 0 chr15 19427254 19427465 -81953056 - AluSx SINE Alu -8 302 92 731 153 9 0 chr15 19427556 19427667 -81952854 - AluSx SINE Alu -199 113 2 1618 180 30 0 chr15 19427693 19427988 -81952533 + AluJb SINE Alu 1 304 -8 4307 215 23 25 chr15 19427988 19429013 -81951508 + L1MA9 LINE L1 5260 6282 -30 1852 231 46 104 chr15 19429104 19429837 -81950684 - LTR34 LTR ERV1 -8 691 1 689 316 69 9 chr15 19429871 19430304 -81950217 + L1M4 LINE L1 2380 2838 -3308 274 209 55 22 chr15 19430320 19430411 -81950110 + L1M4 LINE L1 3184 3277 -2869 745 269 95 37 chr15 19430515 19430731 -81949790 + L1M4 LINE L1 3449 3651 -2495 2209 99 0 20 chr15 19430731 19431068 -81949453 + AluY SINE Alu 3 311 0 745 269 95 37 chr15 19431068 19431335 -81949186 + L1M4 LINE L1 3651 3960 -2186 2176 95 3 23 chr15 19431424 19431728 -81948793 + AluSg SINE Alu 1 298 -12 252 188 43 29 chr15 19431925 19431994 -81948527 + MLT1J LTR MaLR 391 460 -51 539 134 12 0 chr15 19432089 19432171 -81948350 - AluS SINE Alu -226 87 5 279 314 64 29 chr15 19434317 19434457 -81946064 + MIR SINE MIR 48 192 -70 235 274 60 17 chr15 19434598 19434715 -81945806 + L2 LINE L2 3187 3308 -5 250 154 39 0 chr15 19436048 19436100 -81944421 + L1MC4a LINE L1 5885 5938 -1870 222 91 0 0 chr15 19436104 19436137 -81944384 + (TG)n Simple_repeat Simple_repeat 2 34 0 473 254 179 20 chr15 19436331 19436532 -81943989 + MIR SINE MIR 20 252 -10 1348 101 0 0 chr15 19436665 19436843 -81943678 + AluSp SINE Alu 136 313 0 191 323 0 0 chr15 19437182 19437247 -81943274 + MIR SINE MIR 53 117 -91 255 324 0 0 chr15 19437858 19437994 -81942527 + (CAG)n Simple_repeat Simple_repeat 3 138 0 530 280 0 1 chr15 19437999 19439770 -81940751 + GA-rich Low_complexity Low_complexity 1 1768 0 270 261 0 0 chr15 19439804 19439980 -81940541 + GA-rich Low_complexity Low_complexity 3 178 0 367 222 0 17 chr15 19440014 19440190 -81940331 + GA-rich Low_complexity Low_complexity 3 175 0 223 212 0 26 chr15 19440245 19440358 -81940163 + GA-rich Low_complexity Low_complexity 3 112 0 394 305 0 0 chr15 19440392 19440520 -81940001 + GA-rich Low_complexity Low_complexity 3 130 0 806 156 17 67 chr15 19440867 19441046 -81939475 + AluSg/x SINE Alu 126 295 -15 2202 112 3 0 chr15 19441690 19441986 -81938535 - AluSx SINE Alu -15 297 1 638 220 52 6 chr15 19442006 19442179 -81938342 - L1ME2 LINE L1 -2 6162 5982 881 172 0 0 chr15 19443062 19443196 -81937325 + FRAM SINE Alu 18 151 -25 2323 78 0 3 chr15 19443238 19443532 -81936989 + AluY SINE Alu 1 293 -18 2531 165 92 0 chr15 19443538 19444059 -81936462 + L1MB3 LINE L1 5607 6175 -8 26 30 0 0 chr15 19444059 19444092 -81936429 + AT_rich Low_complexity Low_complexity 1 33 0 630 179 49 0 chr15 19444421 19444544 -81935977 + LTR53 LTR ERVL 351 479 -40 2190 254 99 14 chr15 19444617 19445395 -81935126 + L1ME1 LINE L1 5320 6163 -3 2381 96 0 0 chr15 19445409 19445711 -81934810 + AluSg SINE Alu 5 306 -4 2138 130 0 0 chr15 19446077 19446376 -81934145 + AluSx SINE Alu 1 299 -13 961 240 35 47 chr15 19446623 19446699 -81933822 + MER58B DNA MER1_type 3 78 -2342 1663 103 117 43 chr15 19446699 19446981 -81933540 - AluSx SINE Alu -9 303 1 961 240 35 47 chr15 19446981 19447246 -81933275 + MER58B DNA MER1_type 78 340 -1 888 152 0 0 chr15 19447651 19447783 -81932738 + AluJo/FLAM SINE Alu 1 132 -180 1913 125 68 0 chr15 19447786 19447912 -81932609 + AluSx SINE Alu 1 117 -195 1561 109 14 0 chr15 19447912 19448123 -81932398 + AluSg SINE Alu 12 225 -85 1913 125 68 0 chr15 19448123 19448277 -81932244 + AluSx SINE Alu 117 300 -12 2182 120 3 0 chr15 19448437 19448738 -81931783 + AluSg SINE Alu 3 304 -6 210 324 0 45 chr15 19449812 19449923 -81930598 + GA-rich Low_complexity Low_complexity 4 109 0 2403 74 0 0 chr15 19450036 19450333 -81930188 - AluY SINE Alu -14 297 1 2028 122 31 0 chr15 19451014 19451302 -81929219 - AluSx SINE Alu -15 297 1 531 284 122 53 chr15 19451446 19452162 -81928359 - L1M4 LINE L1 -1719 4427 3663 1933 95 103 0 chr15 19452205 19452467 -81928054 + AluSx SINE Alu 1 289 -23 456 278 97 72 chr15 19452785 19453216 -81927305 - HAL1b LINE L1 -837 511 70 2039 126 11 52 chr15 19453403 19453751 -81926770 - MER1B DNA MER1_type -1 336 3 7271 33 7 3 chr15 19454672 19455541 -81924980 + L1PA4 LINE L1 5284 6155 0 2633 46 0 0 chr15 19457135 19457437 -81923084 + AluY SINE Alu 2 303 -8 640 282 55 35 chr15 19458071 19458326 -81922195 - MIR SINE MIR 0 262 3 260 296 9 28 chr15 19458404 19458512 -81922009 + (CAGAGA)n Simple_repeat Simple_repeat 2 107 0 1616 169 59 10 chr15 19458596 19458886 -81921635 + AluJb SINE Alu 1 304 -8 215 250 15 0 chr15 19459401 19459469 -81921052 + GA-rich Low_complexity Low_complexity 4 72 0 372 181 188 169 chr15 19459663 19460072 -81920449 + L1MC4a LINE L1 5849 6265 -1543 390 288 106 25 chr15 19460141 19460301 -81920220 + MIR SINE MIR 73 245 -17 376 291 85 16 chr15 19461020 19461240 -81919281 - L2 LINE L2 -276 3037 2804 1096 198 81 102 chr15 19461274 19461608 -81918913 - MER58B DNA MER1_type -10 331 5 2340 75 0 4 chr15 19461685 19461989 -81918532 + AluSc SINE Alu 1 303 0 190 276 52 0 chr15 19462157 19462215 -81918306 + L2 LINE L2 3252 3312 -1 326 279 36 36 chr15 19462456 19462567 -81917954 - MER91A DNA MER1_type -20 176 66 214 341 37 24 chr15 19463942 19464024 -81916497 + L2 LINE L2 3168 3250 -22 1893 166 0 0 chr15 19465587 19465897 -81914624 + AluJb SINE Alu 1 310 0 333 242 54 33 chr15 19466806 19466983 -81913538 - MER58C DNA MER1_type -9 206 9 415 248 35 0 chr15 19467390 19467503 -81913018 + L1MEd LINE L1 598 714 -5405 * 1101 194 107 4 chr15 19467501 19467743 -81912778 + L1MD3 LINE L1 7729 7995 0 428 224 36 12 chr15 19467750 19467915 -81912606 + L1MEd LINE L1 699 867 -5252 24 0 0 0 chr15 19468525 19468549 -81911972 + AT_rich Low_complexity Low_complexity 1 24 0 2253 102 3 0 chr15 19468728 19469022 -81911499 + AluSx SINE Alu 6 300 -12 2810 194 79 70 chr15 19469559 19469590 -81910931 + L1ME1 LINE L1 5194 5223 -943 2635 115 32 32 chr15 19469590 19470024 -81910497 + Tigger2a DNA MER2_type 1 434 0 2810 194 79 70 chr15 19470024 19470905 -81909616 + L1ME1 LINE L1 5223 6101 -65 228 351 0 18 chr15 19470812 19470913 -81909608 + L1MA10 LINE L1 6169 6269 -65 * 1689 139 9 89 chr15 19470913 19471250 -81909271 + AluJo SINE Alu 1 310 -2 2182 107 3 0 chr15 19472170 19472468 -81908053 + AluSx SINE Alu 1 299 -13 837 209 39 2 chr15 19472470 19472676 -81907845 + MIR SINE MIR 31 241 -21 2414 64 0 0 chr15 19473347 19473656 -81906865 - AluY SINE Alu 0 309 1 189 121 0 0 chr15 19473913 19473946 -81906575 + (CA)n Simple_repeat Simple_repeat 2 34 0 2039 141 0 7 chr15 19475963 19476262 -81904259 + AluSx SINE Alu 1 297 -15 29 0 0 0 chr15 19476284 19476313 -81904208 + AT_rich Low_complexity Low_complexity 1 29 0 2143 98 0 54 chr15 19476698 19477014 -81903507 - AluSg SINE Alu -11 299 1 207 0 0 0 chr15 19478074 19478097 -81902424 + (CA)n Simple_repeat Simple_repeat 2 24 0 2028 125 0 34 chr15 19478920 19479217 -81901304 + AluSx SINE Alu 1 287 -25 1184 179 0 5 chr15 19679290 19679485 -81701036 + MLT1A1 LTR MaLR 172 365 0 2973 277 58 64 chr15 19679647 19679798 -81700723 + L2 LINE L2 1531 1681 -1632 3486 47 21 36 chr15 19679798 19680138 -81700383 - L1PA8 LINE L1 -2 6170 5837 2348 110 0 0 chr15 19680138 19680439 -81700082 - AluSg SINE Alu -7 303 3 3486 47 21 36 chr15 19680439 19680570 -81699951 - L1PA8 LINE L1 -335 5837 5706 2973 277 58 64 chr15 19680570 19680723 -81699798 + L2 LINE L2 1681 1833 -1480 2367 79 0 23 chr15 19680723 19681026 -81699495 - AluY SINE Alu -13 298 3 2973 277 58 64 chr15 19681026 19681880 -81698641 + L2 LINE L2 1833 2676 -637 2529 70 0 6 chr15 19681880 19682193 -81698328 + AluY SINE Alu 1 311 0 2973 277 58 64 chr15 19682193 19682828 -81697693 + L2 LINE L2 2676 3313 0 2191 109 3 0 chr15 19683050 19683353 -81697168 - AluY SINE Alu -7 304 1 2274 141 0 57 chr15 19683442 19683715 -81696806 + L1PA13 LINE L1 5767 6010 -153 2350 78 0 0 chr15 19683715 19684035 -81696486 + AluY SINE Alu 1 320 0 2274 141 0 57 chr15 19684035 19684180 -81696341 + L1PA13 LINE L1 6010 6162 -1 358 241 8 0 chr15 19684265 19684521 -81696000 + (CA)n Simple_repeat Simple_repeat 1 258 0 471 291 0 22 chr15 19684572 19684754 -81695767 + (CA)n Simple_repeat Simple_repeat 1 178 0 408 264 9 5 chr15 19684765 19684984 -81695537 + (CA)n Simple_repeat Simple_repeat 1 220 0 514 294 0 17 chr15 19685091 19685271 -81695250 + (CA)n Simple_repeat Simple_repeat 2 178 0 195 114 0 0 chr15 19685332 19685367 -81695154 + (CA)n Simple_repeat Simple_repeat 2 36 0 278 342 80 35 chr15 19685945 19686343 -81694178 + L2 LINE L2 2288 2703 -611 194 350 117 15 chr15 19687688 19687825 -81692696 + L2 LINE L2 2916 3066 -206 493 269 15 8 chr15 19688436 19688570 -81691951 - L2 LINE L2 0 3313 3179 5687 129 25 18 chr15 19688658 19689605 -81690916 - L1PA15 LINE L1 0 6165 5213 * 10225 228 32 7 chr15 19689593 19692128 -81688393 - L1PA15 LINE L1 -1270 4876 2280 811 285 90 42 chr15 19693250 19693629 -81686892 + MLT1J2 LTR MaLR 39 435 -15 552 335 41 61 chr15 19693648 19694161 -81686360 - L2 LINE L2 -261 3052 2549 2951 191 20 42 chr15 19694238 19694831 -81685690 + LTR22 LTR ERVK 1 580 0 2291 231 23 0 chr15 19695538 19696101 -81684420 - L1M4 LINE L1 -813 5333 4758 1602 224 107 95 chr15 19696093 19696651 -81683870 - L1M4 LINE L1 -2069 4077 3507 * 2461 44 0 17 chr15 19696651 19696944 -81683577 + AluY SINE Alu 1 288 -23 1602 224 107 95 chr15 19696944 19697083 -81683438 - L1M4 LINE L1 -2639 3507 3371 398 253 11 0 chr15 19697227 19697318 -81683203 - L1MCb LINE L1 -5880 165 74 2061 113 3 33 chr15 19697963 19698264 -81682257 - AluSx SINE Alu -20 292 1 2155 120 0 23 chr15 19698533 19698841 -81681680 - AluSx SINE Alu -11 301 1 2483 47 7 3 chr15 19699235 19699533 -81680988 - AluY SINE Alu -12 299 1 2091 281 103 20 chr15 19699655 19700472 -81680049 + L1MD2 LINE L1 272 1156 -5384 2513 214 27 102 chr15 19700510 19701235 -81679286 + L1MD2 LINE L1 3906 4555 -1985 2322 88 0 10 chr15 19701235 19701532 -81678989 + AluY SINE Alu 1 294 -17 2513 214 27 102 chr15 19701532 19701685 -81678836 + L1MD2 LINE L1 4555 4718 -1822 206 61 0 30 chr15 19701725 19701740 -81678781 + (TATAA)n Simple_repeat Simple_repeat 1 15 -17 2248 103 0 7 chr15 19701740 19702031 -81678490 + AluSq SINE Alu 1 289 -24 206 61 0 30 chr15 19702031 19702048 -81678473 + (TATAA)n Simple_repeat Simple_repeat 15 32 0 1242 246 34 34 chr15 19702062 19702480 -81678041 + L1MD2 LINE L1 4766 5183 -1357 2488 242 107 62 chr15 19702538 19702703 -81677818 + L1MD2 LINE L1 5196 5352 -1401 194 0 0 37 chr15 19702703 19702730 -81677791 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2488 242 107 62 chr15 19702730 19703126 -81677395 + L1MD2 LINE L1 5352 5729 -1024 2112 121 7 3 chr15 19703126 19703423 -81677098 + AluSx SINE Alu 3 300 -12 2488 242 107 62 chr15 19703423 19703633 -81676888 + L1MD2 LINE L1 5729 5928 -825 2722 45 0 0 chr15 19703633 19703944 -81676577 + AluY SINE Alu 1 311 0 2488 242 107 62 chr15 19703944 19704665 -81675856 + L1MD2 LINE L1 5928 6741 -12 463 279 73 62 chr15 19706398 19706739 -81673782 - L1ME LINE L1 -420 5701 5357 2270 95 3 19 chr15 19706889 19707205 -81673316 - AluY SINE Alu 0 311 1 420 300 56 4 chr15 19709261 19709494 -81671027 + L1 LINE L1 3535 3779 -2367 208 302 0 44 chr15 19711883 19712065 -81668456 + (CGGGG)n Simple_repeat Simple_repeat 3 176 0 246 269 13 13 chr15 19713705 19713783 -81666738 - L2 LINE L2 -564 2750 2673 429 183 43 43 chr15 19715017 19715110 -81665411 - Tigger7 DNA MER2_type 0 2487 2395 1817 162 20 0 chr15 19715115 19715409 -81665112 - Tigger7 DNA MER2_type -219 514 215 1440 192 48 0 chr15 19715409 19715659 -81664862 + Tigger7 DNA MER2_type 1 262 -2225 557 160 0 40 chr15 19715662 19715762 -81664759 + Tigger7 DNA MER2_type 2492 2587 0 197 259 0 52 chr15 19717256 19717314 -81663207 - L2 LINE L2 -2 3311 3257 1577 182 0 57 chr15 19717930 19718248 -81662273 - AluJo SINE Alu -12 300 1 1668 256 63 47 chr15 19718284 19718531 -81661990 - L1ME2 LINE L1 -2 6162 5921 195 42 0 0 chr15 19718531 19718555 -81661966 + (GGGA)n Simple_repeat Simple_repeat 2 25 0 1668 256 63 47 chr15 19718555 19719031 -81661490 - L1ME2 LINE L1 -243 5921 5427 340 213 56 46 chr15 19719016 19719124 -81661397 - L1ME LINE L1 -598 5566 5458 * 1846 168 80 105 chr15 19719195 19719730 -81660791 - L1MC2 LINE L1 -9 6335 5814 3337 185 6 12 chr15 19719735 19720388 -81660133 - L1MC1 LINE L1 -3 6330 5682 2262 91 3 10 chr15 19720390 19720688 -81659833 - AluY SINE Alu -14 297 2 1622 273 75 24 chr15 19720690 19720861 -81659660 - L1MCc LINE L1 -3014 3927 3766 2323 79 4 0 chr15 19720861 19721182 -81659339 - AluSc SINE Alu 0 322 1 1622 273 75 24 chr15 19721182 19721834 -81658687 - L1MCc LINE L1 -3175 3766 3061 669 206 46 88 chr15 19721855 19722115 -81658406 - MLT2B1 LTR ERVL -41 491 282 363 188 62 21 chr15 19722145 19722241 -81658280 - MLT2D LTR ERVL -314 100 1 635 264 108 16 chr15 19722294 19722673 -81657848 - L1MCc LINE L1 -4134 2988 2575 341 86 17 0 chr15 19722703 19722761 -81657760 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 25 0 0 0 chr15 19722946 19722971 -81657550 + AT_rich Low_complexity Low_complexity 1 25 0 513 249 35 46 chr15 19723053 19723250 -81657271 - L2 LINE L2 -6 3307 3113 225 108 0 0 chr15 19723941 19723978 -81656543 + (CA)n Simple_repeat Simple_repeat 2 38 0 672 278 28 0 chr15 19723986 19724198 -81656323 - L1MCc LINE L1 -4604 2518 2301 5006 169 10 54 chr15 19724200 19724704 -81655817 + L1MA8 LINE L1 4784 5309 -982 2358 105 0 3 chr15 19724704 19725010 -81655511 + AluSx SINE Alu 6 310 -2 5006 169 10 54 chr15 19725010 19726067 -81654454 + L1MA8 LINE L1 5309 6287 -4 713 315 47 25 chr15 19726136 19726953 -81653568 - L1MCc LINE L1 -4888 1535 1180 186 43 0 0 chr15 19727208 19727231 -81653290 + (TTG)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr15 19728816 19728838 -81651683 + AT_rich Low_complexity Low_complexity 1 22 0 537 311 128 19 chr15 19729508 19729923 -81650598 + L2 LINE L2 2839 3298 -15 396 305 24 12 chr15 19730065 19730229 -81650292 + MIR SINE MIR 24 189 -73 23 0 0 0 chr15 19730449 19730472 -81650049 + AT_rich Low_complexity Low_complexity 1 23 0 2163 90 11 0 chr15 19730480 19730757 -81649764 + AluSg SINE Alu 1 280 -30 2547 59 3 0 chr15 19730757 19731062 -81649459 + AluY SINE Alu 1 306 -5 2600 222 64 67 chr15 19731099 19731943 -81648578 - L1MD2 LINE L1 -4 6355 5510 2540 52 3 3 chr15 19731943 19732253 -81648268 - AluY SINE Alu -1 310 1 2600 222 64 67 chr15 19732253 19732573 -81647948 - L1MD2 LINE L1 -849 5510 5191 2432 73 0 6 chr15 19732573 19732886 -81647635 + AluY SINE Alu 1 311 0 2600 222 64 67 chr15 19732886 19733471 -81647050 - L1MD2 LINE L1 -1168 5191 4622 219 36 0 0 chr15 19733631 19733659 -81646862 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1374 196 4 0 chr15 19733661 19733901 -81646620 - AluJb SINE Alu -30 282 42 2114 128 0 0 chr15 19734793 19735082 -81645439 + AluSx SINE Alu 1 289 -23 206 57 57 0 chr15 19736449 19736484 -81644037 + A-rich Low_complexity Low_complexity 3 39 0 1019 128 4 149 chr15 19736543 19736778 -81643743 + MLT1B LTR MaLR 190 390 0 271 290 0 0 chr15 19737374 19737436 -81643085 + MER81 DNA DNA 32 93 -21 2275 244 66 46 chr15 19737439 19738288 -81642233 - L1MD2 LINE L1 -1538 4608 3743 294 70 0 23 chr15 19739018 19739061 -81641460 + U2 snRNA snRNA 1 42 -146 376 341 60 27 chr15 19739215 19739514 -81641007 + L2 LINE L2 2301 2609 -705 254 321 43 36 chr15 19739625 19739765 -81640756 + L2 LINE L2 1959 2099 -1215 2064 131 24 3 chr15 19740013 19740303 -81640218 + AluJo SINE Alu 1 296 -16 231 178 78 67 chr15 19741044 19741134 -81639387 - MLT1L LTR MaLR -5 610 520 243 274 39 10 chr15 19741494 19741596 -81638925 + L1MC4 LINE L1 6600 6704 -1338 * 252 255 38 9 chr15 19741509 19741615 -81638906 - L1MC4 LINE L1 -1339 6703 6595 460 236 27 0 chr15 19741615 19741835 -81638686 + (TA)n Simple_repeat Simple_repeat 1 225 0 232 245 0 82 chr15 19741870 19741968 -81638553 - L1MC4 LINE L1 -1339 6703 6614 183 235 12 24 chr15 19741969 19742054 -81638467 + (TA)n Simple_repeat Simple_repeat 1 84 0 226 277 9 71 chr15 19742055 19742167 -81638354 + L1MC4 LINE L1 6614 6718 -1324 811 186 0 0 chr15 19742328 19742452 -81638069 - FLAM_C SINE Alu -18 125 2 2427 80 0 0 chr15 19742549 19742848 -81637673 + AluY SINE Alu 1 299 -12 279 318 45 18 chr15 19742859 19742969 -81637552 + L2 LINE L2 3160 3272 0 420 324 82 72 chr15 19743491 19743797 -81636724 + L2 LINE L2 2964 3272 0 2423 64 3 3 chr15 19744040 19744336 -81636185 - L1PA6 LINE L1 -1 6153 5858 2487 54 3 0 chr15 19744336 19744631 -81635890 + AluY SINE Alu 1 296 -15 3085 38 6 0 chr15 19744631 19744996 -81635525 - L1PA5 LINE L1 -1898 4248 3882 9924 36 0 0 chr15 19744996 19746894 -81633627 + L1PA5 LINE L1 4249 6149 -5 240 35 0 0 chr15 19746894 19746923 -81633598 + (TA)n Simple_repeat Simple_repeat 1 29 0 231 71 0 0 chr15 19746924 19746952 -81633569 - L1PA6 LINE L1 -258 5873 5846 * 756 16 0 157 chr15 19746949 19747015 -81633506 + L1P2 LINE L1 5391 5431 -723 2538 51 3 6 chr15 19747015 19747327 -81633194 + AluY SINE Alu 1 311 0 756 16 0 157 chr15 19747327 19747381 -81633140 + L1P2 LINE L1 5431 5492 -662 2115 125 0 0 chr15 19747554 19747851 -81632670 - AluSx SINE Alu -15 297 1 180 0 0 0 chr15 19747866 19747886 -81632635 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2329 53 3 7 chr15 19747888 19748172 -81632349 - AluY SINE Alu -24 287 5 189 419 31 16 chr15 19748256 19748385 -81632136 - L2 LINE L2 -1 3271 3141 26 0 0 0 chr15 19748650 19748676 -81631845 + AT_rich Low_complexity Low_complexity 1 26 0 253 354 97 0 chr15 19750221 19750365 -81630156 + MIR SINE MIR 31 188 -74 26 30 0 0 chr15 19750429 19750462 -81630059 + AT_rich Low_complexity Low_complexity 1 33 0 424 318 53 11 chr15 19750512 19750701 -81629820 + MIR SINE MIR 28 224 -38 21 57 0 0 chr15 19750706 19750741 -81629780 + AT_rich Low_complexity Low_complexity 1 35 0 239 311 36 44 chr15 19751262 19751510 -81629011 + L1 LINE L1 3532 3777 -2369 22 35 0 0 chr15 19752801 19752830 -81627691 + GC_rich Low_complexity Low_complexity 1 29 0 182 320 103 49 chr15 19752866 19753069 -81627452 - L2 LINE L2 -850 2464 2251 269 186 14 0 chr15 19754131 19754201 -81626320 + CT-rich Low_complexity Low_complexity 3 73 0 2120 114 7 7 chr15 19754409 19754716 -81625805 + AluSx SINE Alu 1 307 -5 195 298 41 50 chr15 19756453 19756574 -81623947 - L2 LINE L2 -609 2705 2586 225 238 202 24 chr15 19756577 19756661 -81623860 - L2 LINE L2 -1 3271 3173 955 273 73 23 chr15 19757502 19757869 -81622652 - L1M4c LINE L1 -2358 4024 3630 2037 147 144 5 chr15 19757869 19758244 -81622277 - MSTA LTR MaLR 0 428 2 955 273 73 23 chr15 19758244 19758315 -81622206 - L1M4c LINE L1 -2752 3630 3564 466 341 61 29 chr15 19758485 19758732 -81621789 + L2 LINE L2 2068 2336 -978 1514 199 14 7 chr15 19758732 19759052 -81621469 - AluJb SINE Alu 0 322 1 466 341 61 29 chr15 19759052 19759211 -81621310 + L2 LINE L2 2336 2488 -826 897 244 67 8 chr15 19759396 19759634 -81620887 - MLT1C LTR MaLR -2 465 214 27 62 0 0 chr15 19760036 19760084 -81620437 + AT_rich Low_complexity Low_complexity 1 48 0 1289 288 118 45 chr15 19760196 19760881 -81619640 - MER21B LTR ERV1 -128 735 1 3516 120 14 10 chr15 19761004 19761512 -81619009 - MER9 LTR ERVK -1 510 1 31286 83 6 5 chr15 19761515 19765847 -81614674 - HERVK9 LTR ERVK -2 8033 1669 2285 85 0 0 chr15 19765847 19766150 -81614371 + AluY SINE Alu 1 303 0 31286 83 6 5 chr15 19766150 19766196 -81614325 - HERVK9 LTR ERVK -6366 1669 1625 4469 101 18 21 chr15 19766196 19766860 -81613661 - HERVK9 LTR ERVK -5254 662 1 3467 99 47 12 chr15 19766860 19767354 -81613167 - MER9 LTR ERVK 0 511 1 2846 253 36 17 chr15 19767568 19768601 -81611920 - L1ME1 LINE L1 -5 6161 5006 518 273 72 36 chr15 19769052 19769411 -81611110 - L1M4c LINE L1 -2815 3567 3196 1188 244 107 46 chr15 19769412 19770041 -81610480 - L1M4c LINE L1 -3229 3153 2477 2112 139 0 0 chr15 19770041 19770336 -81610185 + AluSx SINE Alu 1 295 -17 1188 244 107 46 chr15 19770336 19770395 -81610126 - L1M4c LINE L1 -3905 2477 2423 2323 234 28 14 chr15 19770406 19770975 -81609546 - L1MD3 LINE L1 -8 7987 7411 414 294 8 0 chr15 19770979 19771098 -81609423 - MLT1F1 LTR MaLR -447 120 1 1322 240 11 35 chr15 19771099 19771470 -81609051 - L1MD3 LINE L1 -718 7277 6916 249 57 0 0 chr15 19771470 19771505 -81609016 + (TG)n Simple_repeat Simple_repeat 1 35 0 275 167 0 0 chr15 19771621 19771669 -81608852 - L1M4c LINE L1 -4740 1823 1776 247 137 39 0 chr15 19771670 19771721 -81608800 - L1M4c LINE L1 -4701 1681 1629 380 286 25 26 chr15 19771746 19771757 -81608764 - L1M4c LINE L1 -4816 1566 1556 2236 114 0 19 chr15 19771757 19772074 -81608447 - AluY SINE Alu 0 311 1 2323 119 0 0 chr15 19772074 19772384 -81608137 - AluSq SINE Alu -3 310 1 380 286 25 26 chr15 19772384 19772571 -81607950 - L1M4c LINE L1 -4824 1558 1266 324 143 0 0 chr15 19772596 19772645 -81607876 - Alu SINE Alu -252 50 2 1910 247 84 13 chr15 19772645 19773276 -81607245 - L1MCc LINE L1 -4823 2118 1443 288 302 68 27 chr15 19773590 19773812 -81606709 - MER41B LTR ERV1 -230 405 175 300 303 10 0 chr15 19773912 19774011 -81606510 - PRIMA41-int LTR ERV1 -4 7752 7653 1966 149 0 10 chr15 19774945 19775246 -81605275 - AluSx SINE Alu -13 299 2 653 360 38 7 chr15 19775547 19775997 -81604524 - PRIMA41-int LTR ERV1 -1934 5822 5359 267 266 0 0 chr15 19776398 19776462 -81604059 - PRIMA41-int LTR ERV1 -1838 5253 5190 2009 138 0 3 chr15 19776756 19777052 -81603469 + AluSx SINE Alu 1 295 -17 2526 71 3 0 chr15 19777423 19777733 -81602788 - AluY SINE Alu 0 311 1 364 269 105 46 chr15 19777974 19778193 -81602328 - MER41B LTR ERV1 -220 415 184 822 190 0 0 chr15 19778228 19778370 -81602151 - L1PA15 LINE L1 0 6165 6024 1122 220 36 11 chr15 19778449 19778749 -81601772 - L1MCc LINE L1 -5711 711 58 500 216 36 91 chr15 19778803 19779028 -81601493 - L1MEc LINE L1 -4203 2281 2006 260 220 43 21 chr15 19779040 19779181 -81601340 + (TA)n Simple_repeat Simple_repeat 1 144 0 370 244 45 61 chr15 19779236 19779482 -81601039 - L1MEc LINE L1 -4361 2065 1824 31719 32 15 1 chr15 19779482 19785509 -81595012 + L1PA3 LINE L1 2 6155 0 21 0 0 0 chr15 19785509 19785530 -81594991 + AT_rich Low_complexity Low_complexity 1 21 0 540 246 44 60 chr15 19785538 19785786 -81594735 - L1MEc LINE L1 -4668 1939 1696 247 182 197 0 chr15 19786058 19786124 -81594397 + LOR1b LTR ERV1 1 79 -382 802 122 0 0 chr15 19786125 19786248 -81594273 - AluSg/x SINE Alu -1 308 186 3475 173 58 6 chr15 19786248 19786927 -81593594 - L1MA8 LINE L1 -342 5949 5194 1436 190 117 56 chr15 19786927 19787019 -81593502 + MER47B DNA MER2_type 1 86 -2237 2546 57 0 0 chr15 19787019 19787316 -81593205 - AluY SINE Alu -14 297 1 1436 190 117 56 chr15 19787316 19787617 -81592904 + MER47B DNA MER2_type 86 418 0 3475 173 58 6 chr15 19787617 19788027 -81592494 - L1MA8 LINE L1 -1097 5194 4807 1022 98 0 0 chr15 19788027 19788159 -81592362 - AluY SINE Alu -179 132 1 1354 177 24 0 chr15 19788166 19788414 -81592107 - L1MA8 LINE L1 -1330 4816 4563 1695 195 25 6 chr15 19789681 19790040 -81590481 - L1MA8 LINE L1 -1613 4533 4168 613 167 0 9 chr15 19790041 19790149 -81590372 + AluSq/x SINE Alu 2 108 -205 1686 126 0 4 chr15 19790149 19790388 -81590133 + AluSx SINE Alu 62 299 -13 2341 75 16 0 chr15 19790717 19791023 -81589498 - AluY SINE Alu 0 311 1 449 248 9 12 chr15 19791177 19791322 -81589199 - L1MEc LINE L1 -3969 2611 2430 257 189 0 19 chr15 19791499 19791552 -81588969 + MLT1A1 LTR MaLR 82 133 -232 252 207 92 23 chr15 19791554 19791641 -81588880 + L1MC4 LINE L1 7948 8040 -2 2414 154 9 16 chr15 19792994 19793430 -81587091 + L1MB8 LINE L1 4548 4980 -1166 274 226 7 55 chr15 19793541 19793687 -81586834 + (CACCC)n Simple_repeat Simple_repeat 4 142 0 1088 215 45 78 chr15 19793822 19793881 -81586640 + L1MB8 LINE L1 5767 5826 -352 1424 200 6 72 chr15 19793881 19794201 -81586320 + AluJb SINE Alu 1 299 -13 1088 215 45 78 chr15 19794201 19794243 -81586278 + L1MB8 LINE L1 5826 5868 -310 2272 93 3 0 chr15 19794243 19794533 -81585988 - AluSg SINE Alu -19 291 1 1088 215 45 78 chr15 19794533 19794830 -81585691 + L1MB8 LINE L1 5868 6153 -25 316 89 18 0 chr15 19794944 19795000 -81585521 + L1MB8 LINE L1 6122 6178 0 858 217 84 113 chr15 19796340 19796755 -81583766 + L1MD3 LINE L1 6486 6888 -1107 229 218 0 0 chr15 19796759 19796814 -81583707 + L1MD3 LINE L1 7009 7063 -932 * 1899 188 32 34 chr15 19796805 19798006 -81582515 + L1MB1 LINE L1 4785 6129 -39 1278 130 10 0 chr15 19798008 19798200 -81582321 + AluSq SINE Alu 1 194 -119 652 217 0 0 chr15 19798457 19798586 -81581935 + AluJb SINE Alu 184 312 0 1161 242 16 3 chr15 19798690 19799000 -81581521 + L1M4 LINE L1 4086 4399 -1747 24 67 0 0 chr15 19799038 19799083 -81581438 + AT_rich Low_complexity Low_complexity 1 45 0 573 28 0 0 chr15 19799083 19799154 -81581367 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 1480 315 15 28 chr15 19799154 19799700 -81580821 + L1MA2 LINE L1 53 591 -6439 363 183 0 61 chr15 19799826 19799908 -81580613 + L1MA2 LINE L1 1811 1887 -5143 644 175 73 58 chr15 19799914 19799942 -81580579 + L1MA2 LINE L1 3181 3207 -3899 2572 47 3 0 chr15 19799942 19800241 -81580280 + AluY SINE Alu 1 300 -11 644 175 73 58 chr15 19800241 19800418 -81580103 + L1MA2 LINE L1 3207 3389 -3717 3623 182 32 18 chr15 19800422 19800696 -81579825 + L1MA2 LINE L1 5479 5747 -1513 2274 112 3 3 chr15 19800696 19801001 -81579520 + AluSp SINE Alu 1 305 -8 3623 182 32 18 chr15 19801001 19801836 -81578685 + L1MA2 LINE L1 5747 6606 -654 2402 165 55 32 chr15 19801836 19802112 -81578409 + Tigger1 DNA MER2_type 1 294 -2124 1776 178 0 13 chr15 19802112 19802421 -81578100 + AluSx SINE Alu 1 305 -7 2402 165 55 32 chr15 19802421 19802616 -81577905 + Tigger1 DNA MER2_type 294 483 -1935 1970 183 52 54 chr15 19802623 19803126 -81577395 - L1 LINE L1 -774 5372 4871 1687 129 0 0 chr15 19803126 19803374 -81577147 + L1MA2 LINE L1 6609 6856 -409 5282 77 29 1 chr15 19803378 19804198 -81576323 + MER11D LTR ERVK 6 897 0 1668 115 33 4 chr15 19804198 19804468 -81576053 + L1MA2 LINE L1 6851 7128 -136 1776 127 71 4 chr15 19804468 19804736 -81575785 - AluSc SINE Alu -2 307 22 1822 226 59 22 chr15 19804736 19805281 -81575240 + L1MC3 LINE L1 4419 4983 -1163 1888 242 78 30 chr15 19805292 19805920 -81574601 + L1MC3 LINE L1 5905 6562 -1223 1073 161 14 14 chr15 19805915 19806126 -81574395 - L1 LINE L1 -1206 4940 4730 * 644 182 91 28 chr15 19806159 19806302 -81574219 + L1MD3 LINE L1 7386 7687 -271 546 278 149 25 chr15 19806321 19806774 -81573747 + MLT1E LTR MaLR 30 593 0 1095 194 43 8 chr15 19806780 19807038 -81573483 + L1MD3 LINE L1 7728 7994 -1 225 358 0 0 chr15 19809706 19809773 -81570748 + HsTC2 DNA Tc2 88 154 -1744 * 981 270 74 25 chr15 19809770 19810215 -81570306 + HsTC2 DNA Tc2 1233 1875 -23 281 322 17 9 chr15 19810256 19810371 -81570150 - MIR SINE MIR -7 255 140 234 309 61 40 chr15 19810516 19810843 -81569678 - L1M4 LINE L1 -1050 5096 4763 212 329 0 14 chr15 19811108 19811248 -81569273 + (CA)n Simple_repeat Simple_repeat 1 138 0 423 106 0 0 chr15 19811442 19811508 -81569013 + (TCC)n Simple_repeat Simple_repeat 1 66 0 624 194 0 0 chr15 19811508 19811611 -81568910 - AluJb SINE Alu -18 294 192 1633 183 3 14 chr15 19811834 19812124 -81568397 - AluJb SINE Alu -25 287 1 414 244 70 13 chr15 19813621 19813777 -81566744 - MER104 DNA Tc2 -1 179 15 192 27 81 0 chr15 19814426 19814463 -81566058 + A-rich Low_complexity Low_complexity 2 41 0 1193 203 78 16 chr15 19816140 19816200 -81564321 - L1MA8 LINE L1 0 6291 6236 2196 192 46 2 chr15 19816200 19816659 -81563862 - L1PA16 LINE L1 -3 6163 5685 1193 203 78 16 chr15 19816659 19816918 -81563603 - L1MA8 LINE L1 -55 6236 5952 2096 133 6 14 chr15 19817400 19817745 -81562776 + L1PB1 LINE L1 5804 6145 -6 2330 94 3 0 chr15 19817757 19818045 -81562476 - AluSp SINE Alu -24 289 1 2953 29 0 0 chr15 19818045 19818387 -81562134 + L1PA3 LINE L1 5814 6155 0 288 205 167 0 chr15 19818760 19818838 -81561683 + MLT1J2 LTR MaLR 72 162 -288 325 276 48 9 chr15 19819452 19819557 -81560964 - MER5A DNA MER1_type -22 167 59 4188 117 93 127 chr15 19819657 19821082 -81559439 - pTR5 LTR ERV1 0 2438 743 2334 156 36 7 chr15 19821165 19821581 -81558940 + MSTA LTR MaLR 1 428 0 4016 170 28 66 chr15 19822505 19823729 -81556792 - L1MA7 LINE L1 0 6291 5022 2289 96 7 0 chr15 19823729 19824031 -81556490 - AluSg SINE Alu -6 304 1 4016 170 28 66 chr15 19824031 19824171 -81556350 - L1MA7 LINE L1 -1269 5022 4878 1865 137 32 3 chr15 19824171 19824455 -81556066 - AluSx SINE Alu -20 292 1 4016 170 28 66 chr15 19824455 19824914 -81555607 - L1MA7 LINE L1 -1413 4878 4548 308 221 77 19 chr15 19826264 19826368 -81554153 - L1MC4 LINE L1 -2 8040 7931 728 274 109 77 chr15 19826468 19827092 -81553429 - L1MC4 LINE L1 -275 7767 7124 284 143 18 0 chr15 19827129 19827185 -81553336 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 1001 227 78 34 chr15 19827186 19827543 -81552978 - L1ME1 LINE L1 -4 6162 5790 2679 176 54 12 chr15 19827548 19828123 -81552398 - L1MD3 LINE L1 0 7995 7397 610 242 110 11 chr15 19828138 19828320 -81552201 + MLT1G LTR MaLR 319 518 -72 1229 189 22 76 chr15 19828329 19828684 -81551837 - L1MD3 LINE L1 -877 7118 6783 294 50 0 0 chr15 19828684 19828724 -81551797 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 815 120 0 0 chr15 19828724 19828832 -81551689 - AluSp/q SINE Alu -32 281 174 503 275 8 0 chr15 19828882 19829002 -81551519 - L1MC4a LINE L1 -1081 6727 6607 524 283 68 25 chr15 19830593 19830830 -81549691 + MIR SINE MIR 8 254 -8 496 221 130 10 chr15 19831561 19831769 -81548752 + MER114 LTR ERV 142 374 -274 21 0 0 0 chr15 19831780 19831801 -81548720 + AT_rich Low_complexity Low_complexity 1 21 0 1260 202 98 12 chr15 19832136 19832463 -81548058 - L1ME2 LINE L1 -21 6423 6069 875 253 114 24 chr15 19832804 19833436 -81547085 - L1ME2 LINE L1 -1077 5349 4661 460 338 39 42 chr15 19833759 19834093 -81546428 - L1ME2 LINE L1 -4213 2394 2062 996 247 117 6 chr15 19834175 19834499 -81546022 - MLT1A1 LTR MaLR 0 365 6 1620 199 50 8 chr15 19834504 19834865 -81545656 - MLT1A1-int LTR MaLR 0 1735 1360 286 243 20 25 chr15 19834861 19834994 -81545527 - L1ME2 LINE L1 -4891 1525 1235 * 21 0 0 0 chr15 19835232 19835253 -81545268 + AT_rich Low_complexity Low_complexity 1 21 0 325 296 93 57 chr15 19836617 19836897 -81543624 + MLT1I LTR MaLR 102 391 -18 301 228 22 22 chr15 19838723 19838815 -81541706 + L1MEd LINE L1 1137 1228 -4891 * 982 162 50 10 chr15 19838811 19839009 -81541512 + MLT1I-int LTR MaLR 1360 1565 -170 247 293 151 42 chr15 19839114 19839353 -81541168 + MLT1I LTR MaLR 126 390 -19 2164 117 0 0 chr15 19839895 19840186 -81540335 - AluSx SINE Alu -21 291 1 2797 175 44 39 chr15 19840569 19840888 -81539633 + L1MC3 LINE L1 7076 7392 -393 1824 141 7 14 chr15 19840888 19841192 -81539329 + AluSx SINE Alu 3 304 0 2797 175 44 39 chr15 19841192 19841546 -81538975 + L1MC3 LINE L1 7392 7754 -31 1474 273 115 16 chr15 19844111 19844913 -81535608 - L1ME2 LINE L1 -3 6161 5281 320 286 35 35 chr15 19844941 19845140 -81535381 - L1ME2 LINE L1 -981 5165 4967 253 336 19 0 chr15 19845286 19845393 -81535128 + L1MCb LINE L1 325 433 -5612 1617 233 72 39 chr15 19845533 19846268 -81534253 + L1MCb LINE L1 539 1302 -4873 645 159 0 0 chr15 19846268 19846375 -81534146 + U6 snRNA snRNA 1 107 0 1617 233 72 39 chr15 19846375 19846401 -81534120 + L1MCb LINE L1 1302 1326 -4849 601 263 97 0 chr15 19846401 19846629 -81533892 + L1MCb LINE L1 2639 2888 -3676 10127 203 19 19 chr15 19846770 19848665 -81531856 + L1PA16 LINE L1 2900 4793 -1791 2487 66 0 0 chr15 19848665 19848967 -81531554 + AluY SINE Alu 1 302 -9 10127 203 19 19 chr15 19848967 19849231 -81531290 + L1PA16 LINE L1 4793 5055 -1529 1903 161 30 25 chr15 19849231 19849592 -81530929 - THE1B LTR MaLR -1 363 1 10127 203 19 19 chr15 19849592 19851118 -81529403 + L1PA16 LINE L1 5055 6581 -3 270 203 14 72 chr15 19851119 19851257 -81529264 + L1MC3 LINE L1 1152 1281 -5145 309 135 0 0 chr15 19851415 19851467 -81529054 + (CA)n Simple_repeat Simple_repeat 2 53 0 288 210 10 40 chr15 19851470 19851570 -81528951 + L1MC3 LINE L1 1438 1534 -4892 2729 255 76 50 chr15 19851636 19852446 -81528075 + L1MC3 LINE L1 3559 4426 -2000 4600 15 0 2 chr15 19852446 19852970 -81527551 - L1PA3 LINE L1 -4 6151 5629 2729 255 76 50 chr15 19852970 19853653 -81526868 + L1MC3 LINE L1 4426 5090 -1336 317 175 4 256 chr15 19854029 19854167 -81526354 + L1MC3 LINE L1 5126 5163 -1263 2097 131 3 0 chr15 19854167 19854458 -81526063 + AluSq SINE Alu 1 292 -21 317 175 4 256 chr15 19854458 19854593 -81525928 + L1MC3 LINE L1 5163 5330 -1096 1774 186 68 28 chr15 19854593 19855096 -81525425 + MLT2A2 LTR ERVL 2 554 0 401 257 62 24 chr15 19855102 19855312 -81525209 + L1MC3 LINE L1 5331 5548 -878 686 239 19 6 chr15 19855315 19855474 -81525047 + AluJb SINE Alu 1 161 -151 422 221 0 0 chr15 19855527 19855613 -81524908 - Tigger7 DNA MER2_type -1 2486 2401 1010 131 47 0 chr15 19855635 19855826 -81524695 - Tigger7 DNA MER2_type -219 514 315 2066 187 30 117 chr15 19855827 19855935 -81524586 + LTR8 LTR ERV1 4 120 -571 2607 93 6 0 chr15 19855935 19856288 -81524233 - THE1A LTR MaLR 0 355 1 11277 96 7 13 chr15 19856288 19857877 -81522644 - THE1A-int LTR MaLR 0 1580 1 2579 88 6 30 chr15 19857877 19858005 -81522516 - THE1A LTR MaLR 0 355 225 2497 67 0 0 chr15 19858005 19858302 -81522219 - AluY SINE Alu -14 297 1 2579 88 6 30 chr15 19858302 19858537 -81521984 - THE1A LTR MaLR -130 225 1 2066 187 30 117 chr15 19858537 19859179 -81521342 + LTR8 LTR ERV1 117 691 0 1385 192 15 4 chr15 19859179 19859438 -81521083 - Tigger7 DNA MER2_type -2167 320 59 3184 189 52 14 chr15 19859475 19860243 -81520278 + L1MC3 LINE L1 5592 6388 -1677 22 0 0 0 chr15 19861460 19861482 -81519039 + AT_rich Low_complexity Low_complexity 1 22 0 189 387 91 5 chr15 19864192 19864378 -81516143 + L2 LINE L2 815 1016 -2298 3375 191 20 26 chr15 19864509 19865300 -81515221 - L1MB3 LINE L1 -1 6182 5397 367 287 17 6 chr15 19865451 19865625 -81514896 + L1M4 LINE L1 2742 2917 -3229 2955 280 40 68 chr15 19865645 19866761 -81513760 - MER21-int LTR ERV1 -781 3410 2341 3661 110 178 0 chr15 19866761 19867345 -81513176 - LTR12 LTR ERV1 0 688 1 2955 280 40 68 chr15 19867345 19867665 -81512856 - MER21-int LTR ERV1 -1850 2341 2014 2263 172 17 2 chr15 19868028 19868436 -81512085 + MSTB1 LTR MaLR 4 417 -15 2038 158 3 0 chr15 19868856 19869167 -81511354 + AluSx SINE Alu 1 312 0 222 191 0 0 chr15 19869189 19869236 -81511285 + (TG)n Simple_repeat Simple_repeat 2 48 0 2312 76 0 45 chr15 19869436 19869750 -81510771 + AluY SINE Alu 2 301 -10 594 311 10 19 chr15 19869821 19870027 -81510494 - MER21-int LTR ERV1 -2319 1872 1669 815 307 86 79 chr15 19870206 19871322 -81509199 + L1MA4 LINE L1 280 1403 -5446 229 300 0 0 chr15 19871386 19871446 -81509075 - L1M2b LINE L1 -6471 738 679 2214 194 10 12 chr15 19871532 19872048 -81508473 + L1MA4 LINE L1 1419 1933 -4916 260 98 0 39 chr15 19872062 19872113 -81508408 + Alu SINE Alu 253 301 0 1479 227 47 31 chr15 19872118 19872943 -81507578 + L1MA4 LINE L1 2598 3433 -3415 1233 326 14 15 chr15 19872943 19873535 -81506986 - MER21-int LTR ERV1 -3089 3669 3079 205 138 0 0 chr15 19873535 19873564 -81506957 + (GAA)n Simple_repeat Simple_repeat 2 30 0 1781 244 42 72 chr15 19873634 19874102 -81506419 - MER77 LTR ERV1 -8 597 150 2435 83 0 3 chr15 19874102 19874414 -81506107 + AluY SINE Alu 1 311 0 1781 244 42 72 chr15 19874414 19874560 -81505961 - MER77 LTR ERV1 -455 150 1 1761 280 50 30 chr15 19874571 19875511 -81505010 + L1MA4 LINE L1 4336 5294 -1554 395 285 5 24 chr15 19875519 19875726 -81504795 + L1M4c LINE L1 2000 2202 -4182 1720 116 0 0 chr15 19875731 19875956 -81504565 + AluSc SINE Alu 58 282 -27 22 35 0 0 chr15 19875956 19875985 -81504536 + AT_rich Low_complexity Low_complexity 1 29 0 3430 157 26 26 chr15 19875999 19876062 -81504459 + L1MA4 LINE L1 5694 5756 -1246 1954 129 0 0 chr15 19876062 19876325 -81504196 + AluSx SINE Alu 34 296 -16 3430 157 26 26 chr15 19876325 19876809 -81503712 + L1MA4 LINE L1 5756 6243 -759 2648 20 0 0 chr15 19876809 19877107 -81503414 + AluYa5 SINE Alu 1 298 -13 3430 157 26 26 chr15 19877107 19877508 -81503013 + L1MA4 LINE L1 6243 6643 -359 2018 107 13 0 chr15 19877523 19877822 -81502699 - L1P3 LINE L1 -426 5728 5426 385 41 0 0 chr15 19877822 19877870 -81502651 + L1PA7 LINE L1 6098 6146 -8 2385 86 0 10 chr15 19877894 19878207 -81502314 + AluY SINE Alu 1 310 -1 21 71 0 0 chr15 19878283 19878325 -81502196 + AT_rich Low_complexity Low_complexity 1 42 0 1034 181 48 4 chr15 19878325 19878552 -81501969 + L1MA4 LINE L1 6648 6884 -118 * 2623 80 0 0 chr15 19878545 19878909 -81501612 - L1M1 LINE L1 -525 5779 5416 572 81 23 0 chr15 19878909 19878982 -81501539 + L1MA1 LINE L1 6211 6298 -4 517 192 8 0 chr15 19878988 19879118 -81501403 + L1MA4A LINE L1 6870 7000 -5 4804 256 75 17 chr15 19879122 19880194 -81500327 + L1M4c LINE L1 2221 3229 -3153 2231 113 0 3 chr15 19880194 19880495 -81500026 + AluSq SINE Alu 1 300 -13 4804 256 75 17 chr15 19880495 19881798 -81498723 + L1M4c LINE L1 3229 4729 -1653 897 196 18 5 chr15 19881801 19882020 -81498501 - L1 LINE L1 -1557 4589 4368 2629 176 41 9 chr15 19882022 19882561 -81497960 + L1PA16 LINE L1 5609 6164 -2 997 226 75 81 chr15 19882567 19882633 -81497888 + L1M4c LINE L1 4726 4791 -1591 1578 239 23 8 chr15 19882633 19883023 -81497498 + MSTD LTR MaLR 1 396 0 997 226 75 81 chr15 19883023 19883511 -81497010 + L1M4c LINE L1 4791 5278 -1104 188 35 35 0 chr15 19883511 19883540 -81496981 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 997 226 75 81 chr15 19883540 19883687 -81496834 + L1M4c LINE L1 5278 5424 -958 342 177 0 0 chr15 19883687 19883749 -81496772 + AluJ/FLAM SINE Alu 1 62 -240 856 168 0 66 chr15 19883749 19883794 -81496727 + L1MB7 LINE L1 5986 6032 -152 2099 133 0 0 chr15 19883794 19884096 -81496425 - AluSx SINE Alu -10 302 1 856 168 0 66 chr15 19884096 19884246 -81496275 + L1MB7 LINE L1 6032 6168 -16 1208 227 52 44 chr15 19884254 19884741 -81495780 + L1MD1 LINE L1 4769 5260 -923 5884 21 0 0 chr15 19884741 19885417 -81495104 + L1PA3 LINE L1 5478 6153 -2 1208 227 52 44 chr15 19885417 19885600 -81494921 + L1MD1 LINE L1 5260 5440 -743 950 149 37 80 chr15 19885600 19885709 -81494812 + AluJo SINE Alu 1 100 -212 1740 48 5 0 chr15 19885709 19885918 -81494603 - AluY SINE Alu 0 311 102 950 149 37 80 chr15 19885918 19885996 -81494525 + AluJo SINE Alu 100 180 -132 311 154 0 0 chr15 19885997 19886049 -81494472 + AluJo SINE Alu 83 134 -168 573 203 152 0 chr15 19886085 19886223 -81494298 + AluJo SINE Alu 138 296 -6 2285 231 89 16 chr15 19886234 19886976 -81493545 + L1MD1 LINE L1 5428 6223 -19 390 195 8 24 chr15 19886984 19887107 -81493414 + L1MC/D LINE L1 4317 4437 -1709 22 0 0 0 chr15 19888075 19888097 -81492424 + AT_rich Low_complexity Low_complexity 1 22 0 302 311 79 66 chr15 19888633 19888951 -81491570 + L1ME4a LINE L1 5601 5922 -199 22 35 0 0 chr15 19889272 19889301 -81491220 + AT_rich Low_complexity Low_complexity 1 29 0 214 135 19 19 chr15 19889398 19889450 -81491071 + A-rich Low_complexity Low_complexity 3 54 0 293 274 43 26 chr15 19889587 19889704 -81490817 - MIR SINE MIR -94 168 50 384 168 38 23 chr15 19889807 19889938 -81490583 + CT-rich Low_complexity Low_complexity 2 134 0 189 74 0 0 chr15 19890406 19890433 -81490088 + (A)n Simple_repeat Simple_repeat 1 27 0 2119 113 3 7 chr15 19890933 19891243 -81489278 + AluSx SINE Alu 1 309 -3 347 252 148 82 chr15 19891388 19891658 -81488863 + L1ME LINE L1 5487 5774 -347 2528 60 0 0 chr15 19891748 19892047 -81488474 + AluY SINE Alu 1 299 -12 324 236 126 50 chr15 19892222 19892421 -81488100 + L1MC/D LINE L1 5257 5470 -2338 198 0 0 0 chr15 19892527 19892549 -81487972 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2201 129 0 3 chr15 19892611 19892921 -81487600 + AluSx SINE Alu 1 309 -3 2127 106 30 0 chr15 19893998 19894300 -81486221 + AluY SINE Alu 1 311 0 608 260 27 18 chr15 19894420 19894643 -81485878 + L1MEc LINE L1 444 668 -5728 409 298 95 34 chr15 19894654 19895097 -81485424 + L1MEc LINE L1 703 1172 -5224 347 301 36 30 chr15 19895155 19895517 -81485004 + L1MEc LINE L1 1309 1672 -4724 299 301 59 30 chr15 19895552 19895630 -81484891 + L1MB5 LINE L1 36 110 -6432 215 31 31 0 chr15 19895630 19895662 -81484859 + (TAA)n Simple_repeat Simple_repeat 1 33 0 299 301 59 30 chr15 19895662 19895786 -81484735 + L1MB5 LINE L1 110 244 -6298 2301 76 0 3 chr15 19895847 19896150 -81484371 + AluY SINE Alu 1 302 -9 964 223 137 42 chr15 19896294 19896348 -81484173 + L1M4 LINE L1 5220 5267 -907 1787 215 3 8 chr15 19896348 19896715 -81483806 - MLT1A1 LTR MaLR 0 365 1 964 223 137 42 chr15 19896715 19897078 -81483443 + L1M4 LINE L1 5267 5678 -496 1661 185 10 3 chr15 19897131 19897428 -81483093 + AluJb SINE Alu 12 310 -2 991 197 43 36 chr15 19897430 19897734 -81482787 + L1MB5 LINE L1 1931 2236 -4408 450 160 13 173 chr15 19897712 19897937 -81482584 - L1M4 LINE L1 -2240 3906 3718 * 2101 244 45 6 chr15 19897941 19898634 -81481887 + L1MB5 LINE L1 5728 6451 -221 723 181 30 0 chr15 19898643 19898809 -81481712 + L1MB5 LINE L1 6496 6666 -6 295 283 0 19 chr15 19898812 19898918 -81481603 + L1MEc LINE L1 1666 1769 -4627 744 260 0 40 chr15 19898918 19899141 -81481380 + MER20 DNA MER1_type 1 214 -5 391 218 23 74 chr15 19899202 19899418 -81481103 + L1MEc LINE L1 1837 2041 -4355 1337 227 42 62 chr15 19899612 19900211 -81480310 - L1M4 LINE L1 -2242 3904 3318 656 265 29 23 chr15 19900481 19900832 -81479689 - L1MCa LINE L1 -5711 334 2 715 230 22 0 chr15 19900834 19901012 -81479509 - L1MD3 LINE L1 -419 7576 7395 289 262 75 37 chr15 19901017 19901124 -81479397 - MLT1F1 LTR MaLR -456 111 1 562 298 21 0 chr15 19901130 19901321 -81479200 - L1MD3 LINE L1 -727 7268 7074 1992 112 10 10 chr15 19901381 19901676 -81478845 - AluY SINE Alu -16 295 1 1160 152 28 5 chr15 19901677 19901894 -81478627 - L1M4 LINE L1 -479 5705 5484 3257 182 95 33 chr15 19902091 19902286 -81478235 - L1MB3 LINE L1 -1 6182 6000 1835 155 7 17 chr15 19902286 19902583 -81477938 - AluJo SINE Alu -18 294 1 3257 182 95 33 chr15 19902583 19903201 -81477320 - L1MB3 LINE L1 -183 6000 5319 248 160 13 27 chr15 19903319 19903394 -81477127 + L1ME1 LINE L1 5293 5366 -2629 2142 71 0 0 chr15 19904134 19904401 -81476120 - AluY SINE Alu -43 268 2 2398 125 17 3 chr15 19904631 19904990 -81475531 - THE1B LTR MaLR 0 364 1 1294 243 133 41 chr15 19905106 19905646 -81474875 - MLT1G LTR MaLR 0 590 1 4571 158 23 33 chr15 19905740 19907187 -81473334 - L1MA8 LINE L1 -5 6286 4855 322 294 33 39 chr15 19907825 19907978 -81472543 + MLT1I LTR MaLR 250 401 -8 318 50 0 0 chr15 19908100 19908140 -81472381 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 * 972 49 0 0 chr15 19908139 19908261 -81472260 + (TTTC)n Simple_repeat Simple_repeat 4 125 0 1879 137 6 29 chr15 19908296 19908610 -81471911 - AluSg SINE Alu -3 307 1 2019 119 11 0 chr15 19908858 19909136 -81471385 + AluSx SINE Alu 1 281 -31 227 241 21 21 chr15 19909309 19909450 -81471071 + (TTGTG)n Simple_repeat Simple_repeat 1 141 0 2532 56 10 3 chr15 19909955 19910259 -81470262 + AluY SINE Alu 1 306 -5 919 278 39 30 chr15 19910284 19910690 -81469831 + L1ME1 LINE L1 5550 5959 -207 432 0 0 0 chr15 19911036 19911084 -81469437 + (CA)n Simple_repeat Simple_repeat 2 49 0 1715 133 98 11 chr15 19911245 19911530 -81468991 - AluSx SINE Alu -2 310 1 270 0 0 0 chr15 19911539 19911569 -81468952 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 2477 183 17 17 chr15 19911680 19912206 -81468315 + L1PA16 LINE L1 5625 6150 -16 1103 222 19 12 chr15 19912224 19912548 -81467973 - L1MB3 LINE L1 -798 5348 5023 * 3486 129 5 7 chr15 19912521 19913117 -81467404 - L1P LINE L1 -849 5297 4703 1308 209 13 7 chr15 19913115 19913416 -81467105 - L1MB3 LINE L1 -1898 4248 3946 * 3867 172 7 12 chr15 19913469 19914218 -81466303 + L1PB4 LINE L1 5411 6155 -1 1102 265 21 9 chr15 19914220 19914358 -81466163 - L1MB8 LINE L1 -55 6123 5988 1688 169 14 3 chr15 19914358 19914520 -81466001 - AluSx SINE Alu -19 293 125 378 57 0 0 chr15 19914520 19914573 -81465948 + (TG)n Simple_repeat Simple_repeat 2 54 0 1688 169 14 3 chr15 19914573 19914700 -81465821 - AluSx SINE Alu -187 125 1 1102 265 21 9 chr15 19914700 19914938 -81465583 - L1MB8 LINE L1 -190 5988 5746 593 300 113 32 chr15 19915365 19915860 -81464661 + L1ME1 LINE L1 37 419 -5278 2429 90 0 6 chr15 19915860 19916172 -81464349 + AluSp SINE Alu 1 310 -3 593 300 113 32 chr15 19916172 19916499 -81464022 + L1ME1 LINE L1 419 718 -4979 2450 266 59 13 chr15 19916529 19917368 -81463153 + L1ME1 LINE L1 4270 5187 -1048 642 121 0 17 chr15 19917368 19917484 -81463037 - L1PA13 LINE L1 0 6163 6050 2450 266 59 13 chr15 19917484 19918010 -81462511 + L1ME1 LINE L1 5187 5687 -548 1131 256 66 5 chr15 19918017 19918428 -81462093 + L1ME1 LINE L1 5785 6220 -15 21 0 0 0 chr15 19918491 19918512 -81462009 + AT_rich Low_complexity Low_complexity 1 21 0 4920 167 119 7 chr15 19918513 19920033 -81460488 - L1MA6 LINE L1 -4 6296 4539 210 23 70 23 chr15 19920033 19920076 -81460445 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 4920 167 119 7 chr15 19920076 19920308 -81460213 - L1MA6 LINE L1 -1761 4539 4334 698 117 55 6 chr15 19922389 19922552 -81457969 + GA-rich Low_complexity Low_complexity 2 172 0 970 270 62 75 chr15 19923370 19923996 -81456525 + L1ME LINE L1 78 695 -5375 22 0 0 0 chr15 19924298 19924320 -81456201 + AT_rich Low_complexity Low_complexity 1 22 0 226 98 39 0 chr15 19924541 19924592 -81455929 + (TG)n Simple_repeat Simple_repeat 2 54 0 453 224 28 7 chr15 19924707 19924850 -81455671 - L1ME3A LINE L1 -31 6139 5994 263 298 53 57 chr15 19925617 19925845 -81454676 - L2 LINE L2 -1285 2029 1803 374 313 144 23 chr15 19928155 19928411 -81452110 - L1MC4a LINE L1 -1962 5846 5560 522 303 117 36 chr15 19929001 19929643 -81450878 - L2 LINE L2 0 3313 2579 1461 183 14 21 chr15 19930253 19930538 -81449983 + AluJo SINE Alu 20 302 -10 383 229 92 0 chr15 19931509 19931618 -81448903 + MER5A DNA MER1_type 52 170 -19 460 346 79 31 chr15 19932189 19932608 -81447913 - L2 LINE L2 -678 2636 2198 807 34 61 0 chr15 19933051 19933199 -81447322 + (TA)n Simple_repeat Simple_repeat 2 158 0 251 187 243 37 chr15 19933243 19933350 -81447171 - MLT1H LTR MaLR -9 540 412 270 347 100 20 chr15 19933722 19933973 -81446548 - L2 LINE L2 -1185 2129 1859 317 244 49 0 chr15 19934880 19934962 -81445559 - L1MC4 LINE L1 -16 8026 7941 1778 251 153 6 chr15 19935083 19935868 -81444653 - L1MC4 LINE L1 -144 7898 6999 442 211 28 20 chr15 19935865 19936493 -81444028 - L1MC3 LINE L1 0 7785 6139 * 239 273 34 0 chr15 19936493 19936581 -81443940 - MLT1F1 LTR MaLR -442 125 35 260 169 15 15 chr15 19936605 19936670 -81443851 - L1MC4a LINE L1 -930 6878 6814 2368 50 3 0 chr15 19937818 19938101 -81442420 - AluY SINE Alu -24 287 4 264 232 12 0 chr15 19938275 19938357 -81442164 + (TA)n Simple_repeat Simple_repeat 1 83 0 2044 115 3 7 chr15 19938653 19938948 -81441573 + AluSq SINE Alu 1 294 -19 216 324 81 37 chr15 19941500 19941636 -81438885 - MIR SINE MIR -110 152 11 263 281 52 72 chr15 19941691 19941997 -81438524 - L1ME LINE L1 -279 5842 5543 198 351 0 0 chr15 19942774 19942848 -81437673 + MIR SINE MIR 188 261 -1 313 188 12 12 chr15 19943526 19943606 -81436915 - L1MD3 LINE L1 -86 7909 7830 587 72 0 0 chr15 19943606 19943689 -81436832 - Alu SINE Alu -6 303 221 5255 101 95 1 chr15 19943816 19944571 -81435950 + LTR12 LTR ERV1 1 826 0 2267 85 0 13 chr15 19944607 19944912 -81435609 - AluY SINE Alu -10 301 1 1840 283 107 26 chr15 19945082 19946142 -81434379 - L1MEc LINE L1 -5138 1258 114 2199 194 33 5 chr15 19946659 19947108 -81433413 + L1PA15 LINE L1 5704 6165 0 337 196 41 0 chr15 19949205 19949302 -81431219 - L1MCa LINE L1 -3024 3402 3302 881 196 41 21 chr15 19949304 19949621 -81430900 - L1MCa LINE L1 -3963 2463 2247 779 198 211 0 chr15 19949639 19949886 -81430635 + L1MCa LINE L1 1921 2219 -4207 624 260 51 23 chr15 19949886 19950199 -81430322 - MLT1E LTR MaLR -248 345 1 398 230 25 93 chr15 19950203 19950288 -81430233 - L1MD3 LINE L1 -282 7713 7643 2171 93 0 10 chr15 19950288 19950578 -81429943 - AluY SINE Alu -11 300 14 398 230 25 93 chr15 19950578 19950653 -81429868 - L1MD3 LINE L1 -352 7643 7564 3955 220 101 75 chr15 19950846 19951067 -81429454 - L1MC2 LINE L1 -3 7770 7556 1772 141 0 4 chr15 19951067 19951336 -81429185 - AluY SINE Alu -13 298 31 3955 220 101 75 chr15 19951336 19951566 -81428955 - L1MC2 LINE L1 -217 7556 7334 3719 113 143 2 chr15 19951566 19952169 -81428352 - LTR12 LTR ERV1 0 688 1 3955 220 101 75 chr15 19952169 19952346 -81428175 - L1MC2 LINE L1 -439 7334 7163 2171 110 3 3 chr15 19952346 19952647 -81427874 + AluY SINE Alu 1 301 -10 3955 220 101 75 chr15 19952647 19953671 -81426850 - L1MC2 LINE L1 -610 7163 6097 2358 85 10 0 chr15 19953671 19953966 -81426555 + AluSx SINE Alu 1 298 -14 3955 220 101 75 chr15 19953966 19954217 -81426304 - L1MC2 LINE L1 -1676 6097 5854 3621 215 52 32 chr15 19954217 19955592 -81424929 - L1MC2 LINE L1 -720 5454 4044 782 232 29 79 chr15 19955661 19955918 -81424603 - L1MC2 LINE L1 -2302 3844 3607 185 0 40 0 chr15 19955918 19955943 -81424578 + (TTG)n Simple_repeat Simple_repeat 2 27 0 782 232 29 79 chr15 19955943 19956025 -81424496 - L1MC2 LINE L1 -2539 3607 3522 352 241 46 8 chr15 19956027 19956214 -81424307 + MLT1E LTR MaLR 346 585 -8 830 202 51 20 chr15 19956217 19956470 -81424051 + L1MD3 LINE L1 7721 7981 -14 1490 190 64 39 chr15 19958433 19958823 -81421698 - MSTB1 LTR MaLR 0 432 33 2327 87 3 22 chr15 19958824 19959135 -81421386 - AluSp SINE Alu -8 305 1 2588 214 33 48 chr15 19959136 19959225 -81421296 + MER54A LTR ERVL 188 277 -624 2147 137 0 6 chr15 19959225 19959538 -81420983 - AluSx SINE Alu -1 311 1 2588 214 33 48 chr15 19959538 19960173 -81420348 + MER54A LTR ERVL 277 901 0 2198 96 3 3 chr15 19960284 19960577 -81419944 + AluSc SINE Alu 1 293 -16 627 290 69 35 chr15 19960788 19961240 -81419281 + HsTC2 DNA Tc2 1233 1875 -23 2086 105 54 0 chr15 19961554 19961848 -81418673 + AluSx SINE Alu 1 310 -2 482 262 142 21 chr15 19961900 19962067 -81418454 - L1M4 LINE L1 -1125 5021 4817 333 0 0 0 chr15 19962067 19962104 -81418417 + (TG)n Simple_repeat Simple_repeat 2 38 0 482 262 142 21 chr15 19962104 19962169 -81418352 - L1M4 LINE L1 -1329 4817 4761 884 191 7 0 chr15 19963966 19964113 -81416408 - FRAM SINE Alu -30 146 1 2145 100 0 33 chr15 19965004 19965305 -81415216 - AluSc SINE Alu -18 291 1 464 316 82 9 chr15 19965506 19965737 -81414784 - L1MEc LINE L1 -6083 313 66 2232 91 10 0 chr15 19965908 19966205 -81414316 + AluSx SINE Alu 1 300 -12 1385 104 79 5 chr15 19966553 19966755 -81413766 - AluSc SINE Alu -12 297 81 266 252 117 27 chr15 19966778 19966889 -81413632 - HsTC2 DNA Tc2 -546 1352 1232 221 197 26 40 chr15 19967988 19968064 -81412457 + L2 LINE L2 2427 2501 -813 2073 81 34 10 chr15 19968516 19968862 -81411659 - AluSq SINE Alu 0 353 1 528 89 125 54 chr15 19968961 19969073 -81411448 - AluSc SINE Alu 0 309 190 930 101 0 0 chr15 19969073 19969192 -81411329 - AluSq SINE Alu -159 154 36 962 291 42 13 chr15 19969523 19970066 -81410455 - L1M4 LINE L1 -3204 2942 2384 487 192 96 25 chr15 19970114 19970312 -81410209 + L1MCa LINE L1 2008 2219 -4207 353 295 180 25 chr15 19970314 19970514 -81410007 - MLT1E LTR MaLR -250 343 113 6666 19 0 0 chr15 19970536 19971335 -81409186 - L1PA3 LINE L1 0 6155 5357 319 255 9 38 chr15 19971336 19971442 -81409079 - MLT1E LTR MaLR -487 106 4 668 189 26 46 chr15 19971448 19971601 -81408920 - L1MD3 LINE L1 -281 7714 7565 1785 74 0 41 chr15 19971793 19972037 -81408484 - AluY SINE Alu -6 305 72 5028 232 91 34 chr15 19972085 19973953 -81406568 - L1MC2 LINE L1 0 7772 5835 269 188 12 75 chr15 19973934 19973977 -81406544 - L1MC2 LINE L1 -788 5454 5417 * 2037 202 34 7 chr15 19973977 19974392 -81406129 - MSTB LTR MaLR 0 426 1 269 188 12 75 chr15 19974392 19974428 -81406093 - L1MC2 LINE L1 -825 5417 5380 * 1084 241 69 11 chr15 19974423 19974800 -81405721 - L1MC2 LINE L1 -1008 5138 4740 467 118 0 0 chr15 19974800 19974868 -81405653 - AluJ/FLAM SINE Alu -217 95 28 542 179 9 127 chr15 19974872 19975101 -81405420 - L1MC2 LINE L1 -1446 4700 4499 888 177 0 0 chr15 19975130 19975271 -81405250 - FRAM SINE Alu -35 141 1 22 0 0 0 chr15 19975279 19975301 -81405220 + AT_rich Low_complexity Low_complexity 1 22 0 3980 137 46 29 chr15 19975358 19976119 -81404402 - LTR1 LTR ERV1 -11 774 1 736 235 20 44 chr15 19976122 19976373 -81404148 - L1MC2 LINE L1 -2383 3763 3519 392 220 53 53 chr15 19976423 19976573 -81403948 + MLT1E LTR MaLR 475 593 0 969 221 27 8 chr15 19976575 19976837 -81403684 + L1MD3 LINE L1 7724 7990 -5 2224 103 20 0 chr15 19977476 19977776 -81402745 + AluSg SINE Alu 1 306 -4 1635 129 20 106 chr15 19979545 19979680 -81400841 + AluYb8 SINE Alu 1 146 -172 2017 105 51 10 chr15 19979680 19979974 -81400547 + AluSc SINE Alu 1 306 -3 1635 129 20 106 chr15 19979974 19980179 -81400342 + AluYb8 SINE Alu 146 312 -6 4329 198 38 8 chr15 19980194 19981069 -81399452 + MER54A LTR ERVL 1 901 0 273 321 36 0 chr15 19981285 19981397 -81399124 + HsTC2 DNA Tc2 35 150 -1748 * 611 293 75 35 chr15 19981396 19981847 -81398674 + HsTC2 DNA Tc2 1231 1875 -23 317 358 137 4 chr15 19981884 19982110 -81398411 - MIR SINE MIR 0 262 7 277 262 158 32 chr15 19982221 19982442 -81398079 - L1M4 LINE L1 -1125 5021 4773 29 0 0 0 chr15 19984449 19984478 -81396043 + AT_rich Low_complexity Low_complexity 1 29 0 393 315 108 22 chr15 19985249 19985481 -81395040 - L1MEc LINE L1 -6083 313 62 282 305 99 21 chr15 19986429 19986570 -81393951 - MIR SINE MIR -1 261 110 2067 158 3 0 chr15 19986598 19986901 -81393620 - AluSx SINE Alu -8 304 1 223 200 143 76 chr15 19986908 19987013 -81393508 + MER5B DNA MER1_type 5 116 -62 1641 79 0 10 chr15 19987186 19987388 -81393133 - AluSq SINE Alu -113 200 1 200 287 196 28 chr15 19987944 19988087 -81392434 - MIR3 SINE MIR -35 173 7 348 133 33 0 chr15 19988278 19988338 -81392183 + MLT1C LTR MaLR 1 62 -405 2290 163 59 2 chr15 19988765 19989170 -81391351 + MSTA LTR MaLR 1 428 0 433 248 32 6 chr15 19989289 19989446 -81391075 + L2 LINE L2 2429 2589 -725 2094 93 4 0 chr15 19989549 19989827 -81390694 - AluSx SINE Alu -33 279 1 1137 239 64 18 chr15 19990588 19991098 -81389423 + L1MD3 LINE L1 4915 5454 -720 2197 104 10 0 chr15 19991100 19991389 -81389132 - AluSp SINE Alu -21 292 1 442 173 0 39 chr15 19991393 19991497 -81389024 + L1MD3 LINE L1 5854 5953 -2042 1991 213 82 16 chr15 19991619 19992086 -81388435 - L1MC3 LINE L1 -74 7711 7199 2800 7 0 0 chr15 19992086 19992388 -81388133 + AluYa5 SINE Alu 1 302 -9 1991 213 82 16 chr15 19992388 19992483 -81388038 - L1MC3 LINE L1 -586 7199 7112 530 182 0 9 chr15 19992496 19992606 -81387915 - L1PB3 LINE L1 -14 6140 6032 1565 156 154 96 chr15 19992606 19993150 -81387371 + LTR12 LTR ERV1 1 576 -138 348 215 25 0 chr15 19993150 19993229 -81387292 - L1PB3 LINE L1 -114 6040 5960 754 127 32 0 chr15 19993381 19993507 -81387014 - L1PB3 LINE L1 -207 5947 5818 1272 300 24 20 chr15 19993740 19994487 -81386034 - L1M4 LINE L1 -3022 3124 2375 305 200 56 11 chr15 19994500 19994590 -81385931 + L1MCa LINE L1 2101 2194 -4232 26 82 0 0 chr15 19994590 19994651 -81385870 + AT_rich Low_complexity Low_complexity 1 61 0 4148 127 40 19 chr15 19994652 19994709 -81385812 - L1PA14 LINE L1 -24 6137 6083 2064 153 80 30 chr15 19994709 19995148 -81385373 - LOR1b LTR ERV1 0 461 1 4148 127 40 19 chr15 19995148 19995841 -81384680 - L1PA14 LINE L1 -78 6083 5371 664 71 36 0 chr15 19995832 19995944 -81384577 - L1P4 LINE L1 -676 5489 5374 * 3742 144 16 21 chr15 19995939 19996797 -81383724 - L1P4 LINE L1 -673 5488 4638 2191 92 7 10 chr15 19996797 19997090 -81383431 + AluY SINE Alu 1 292 -19 3742 144 16 21 chr15 19997090 19997172 -81383349 - L1P4 LINE L1 -1523 4638 4557 379 287 0 29 chr15 19997378 19997514 -81383007 - MLT1E LTR MaLR -461 132 1 398 193 35 35 chr15 19997521 19997635 -81382886 - L1MD3 LINE L1 -285 7710 7597 1864 89 8 4 chr15 19997903 19998184 -81382337 + AluY SINE Alu 35 316 0 2064 133 3 0 chr15 19998284 19998569 -81381952 + AluSx SINE Alu 5 290 -22 580 229 3 129 chr15 19998569 19998787 -81381734 - L1MCa LINE L1 -3390 3036 2867 2280 104 0 3 chr15 19998787 19999085 -81381436 - AluSg SINE Alu -13 297 1 580 229 3 129 chr15 19999085 19999176 -81381345 - L1MCa LINE L1 -3559 2867 2766 2365 95 0 0 chr15 19999187 19999483 -81381038 - AluSx SINE Alu -16 296 1 261 261 95 46 chr15 19999676 19999917 -81380604 - L1 LINE L1 -1127 5019 4767 218 281 0 0 chr15 19999932 19999989 -81380532 - MIR SINE MIR -205 57 1 1690 200 0 7 chr15 20000054 20000354 -81380167 - AluJb SINE Alu -14 298 1 2183 118 3 3 chr15 20000604 20000908 -81379613 + AluSc SINE Alu 1 304 -5 957 228 38 29 chr15 20001008 20001129 -81379392 - L1MCa LINE L1 -3907 2700 2582 531 140 75 9 chr15 20001129 20001236 -81379285 - L1MA3 LINE L1 0 6305 6192 957 228 38 29 chr15 20001236 20001554 -81378967 - L1MCa LINE L1 -4025 2582 2223 1181 183 3 45 chr15 20001560 20001871 -81378650 + L1MCa LINE L1 1921 2218 -4208 2415 86 0 0 chr15 20002232 20002535 -81377986 + AluY SINE Alu 1 303 -8 259 206 55 14 chr15 20002536 20002609 -81377912 - L1MD3 LINE L1 -355 7640 7565 3967 239 61 72 chr15 20002854 20004752 -81375769 - L1MC3 LINE L1 -14 8051 6173 2365 112 3 0 chr15 20004752 20005064 -81375457 - AluSp SINE Alu 0 313 1 3967 239 61 72 chr15 20005064 20005104 -81375417 - L1MC3 LINE L1 -1892 6173 6134 1527 194 3 48 chr15 20005114 20005428 -81375093 + AluJo SINE Alu 1 300 -12 1792 237 65 20 chr15 20005440 20005561 -81374960 - L1MC3 LINE L1 -732 5722 5608 2292 90 3 0 chr15 20005561 20005849 -81374672 - AluSg SINE Alu -17 293 5 1792 237 65 20 chr15 20005849 20006508 -81374013 - L1MC3 LINE L1 -846 5608 4896 1979 260 35 41 chr15 20006521 20007382 -81373139 - L1MC3 LINE L1 -1772 4654 3799 348 246 18 2 chr15 20007383 20007563 -81372958 + MLT1F1 LTR MaLR 349 567 0 838 213 31 39 chr15 20007571 20007778 -81372743 + L1MD3 LINE L1 7731 7937 -58 2140 127 0 25 chr15 20007778 20008094 -81372427 - AluSx SINE Alu -4 308 1 838 213 31 39 chr15 20008094 20008140 -81372381 + L1MD3 LINE L1 7937 7982 -13 230 21 62 21 chr15 20008169 20008217 -81372304 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 2382 97 0 7 chr15 20008626 20008936 -81371585 - AluSq SINE Alu -5 308 1 1890 164 3 6 chr15 20009259 20009570 -81370951 + AluJo SINE Alu 1 310 -2 2269 154 28 42 chr15 20010844 20011225 -81369296 + MSTA LTR MaLR 1 377 -51 2376 86 7 0 chr15 20011225 20011527 -81368994 - AluSg SINE Alu -6 304 1 2269 154 28 42 chr15 20011527 20011579 -81368942 + MSTA LTR MaLR 377 428 0 2150 122 3 0 chr15 20011837 20012141 -81368380 - AluSx SINE Alu -7 305 1 3805 221 18 18 chr15 20012143 20013029 -81367492 + MER54A LTR ERVL 16 901 0 576 186 16 32 chr15 20015962 20016150 -81364371 - L1MA7 LINE L1 -6 6285 6101 1773 243 46 35 chr15 20016365 20017533 -81362988 - L1MC3 LINE L1 -2994 3432 2255 2135 166 32 12 chr15 20017573 20017984 -81362537 + MSTB1 LTR MaLR 1 419 -13 2459 76 0 0 chr15 20018033 20018336 -81362185 + AluY SINE Alu 1 303 -8 794 215 89 7 chr15 20018336 20018601 -81361920 + L1MCa LINE L1 1935 2221 -4205 433 323 165 25 chr15 20018618 20018903 -81361618 - MLT1E LTR MaLR -268 325 1 601 210 14 0 chr15 20018906 20019049 -81361472 - L1MD3 LINE L1 -281 7714 7570 964 196 11 6 chr15 20019329 20019508 -81361013 + AluJb SINE Alu 130 309 -3 4818 229 86 41 chr15 20019521 20020231 -81360290 - L1MC3 LINE L1 -25 8040 7364 1991 119 14 11 chr15 20020231 20020540 -81359981 - AluSc SINE Alu 0 312 3 4818 229 86 41 chr15 20020540 20021474 -81359047 - L1MC3 LINE L1 -701 7364 6301 2575 58 0 10 chr15 20021474 20021787 -81358734 + AluY SINE Alu 1 310 -1 4818 229 86 41 chr15 20021787 20021964 -81358557 - L1MC3 LINE L1 -1764 6301 6134 1835 254 59 33 chr15 20021965 20022635 -81357886 - L1MC3 LINE L1 -721 5733 5028 1558 194 3 40 chr15 20022635 20022828 -81357693 - AluJo SINE Alu 0 312 134 2219 113 3 0 chr15 20022828 20023128 -81357393 - AluSx SINE Alu -11 301 1 1558 194 3 40 chr15 20023128 20023258 -81357263 - AluJo SINE Alu -178 134 1 1835 254 59 33 chr15 20023258 20023573 -81356948 - L1MC3 LINE L1 -1426 5028 4723 852 299 131 18 chr15 20023577 20024243 -81356278 - L1MC3 LINE L1 -1799 4627 3887 443 187 47 19 chr15 20024327 20024515 -81356006 + MLT1E LTR MaLR 355 593 0 758 220 47 8 chr15 20024523 20024759 -81355762 + L1MD3 LINE L1 7731 7975 -20 2408 85 0 0 chr15 20025133 20025427 -81355094 + AluY SINE Alu 1 294 -17 941 163 69 82 chr15 20025800 20026263 -81354258 + THE1C LTR MaLR 1 375 0 1788 131 64 0 chr15 20026946 20027236 -81353285 + AluSx SINE Alu 1 307 0 1194 175 9 22 chr15 20028129 20028358 -81352163 - L1PA15 LINE L1 0 6165 5940 2429 62 10 10 chr15 20028447 20028755 -81351766 - AluY SINE Alu -3 308 1 505 236 124 42 chr15 20028989 20029248 -81351273 + HsTC2 DNA Tc2 1233 1688 -210 1379 214 45 3 chr15 20029814 20030104 -81350417 - AluJb SINE Alu -10 302 1 2261 78 23 13 chr15 20030181 20030489 -81350032 + AluY SINE Alu 1 311 0 403 329 92 12 chr15 20030815 20031055 -81349466 - L1MEc LINE L1 -6046 350 92 2354 90 10 0 chr15 20031273 20031574 -81348947 + AluSp SINE Alu 1 304 -9 656 217 73 62 chr15 20032622 20032929 -81347592 - L1MC3 LINE L1 -3942 2665 2294 2256 88 0 3 chr15 20032929 20033248 -81347273 - AluSg SINE Alu 0 318 1 656 217 73 62 chr15 20033248 20033343 -81347178 - L1MC3 LINE L1 -4313 2294 2201 * 1418 162 0 29 chr15 20033339 20033647 -81346874 + L1MCa LINE L1 1921 2219 -4207 677 253 115 48 chr15 20033647 20033959 -81346562 - MLT1E LTR MaLR -248 345 13 325 311 121 0 chr15 20033973 20034105 -81346416 - L1MD3 LINE L1 -282 7713 7566 3915 250 77 44 chr15 20034359 20036082 -81344439 - L1MC3 LINE L1 -11 7774 5995 2273 84 3 53 chr15 20036096 20036419 -81344102 - AluSq SINE Alu -6 307 1 2364 172 42 4 chr15 20036522 20037022 -81343499 - L1PA15 LINE L1 -360 5794 5276 198 0 0 0 chr15 20037301 20037323 -81343198 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 555 157 0 0 chr15 20037328 20037411 -81343110 - AluSc SINE Alu -21 288 206 303 75 0 0 chr15 20037411 20037451 -81343070 - Alu SINE Alu -263 40 1 411 113 0 0 chr15 20037460 20037522 -81342999 + (TG)n Simple_repeat Simple_repeat 1 62 0 2136 75 0 4 chr15 20037522 20037803 -81342718 - AluY SINE Alu -31 280 1 2363 74 0 0 chr15 20038073 20038371 -81342150 - AluY SINE Alu -13 298 1 390 234 73 92 chr15 20038558 20038776 -81341745 - L1MCa LINE L1 -3759 2667 2454 302 78 0 59 chr15 20038780 20038831 -81341690 - MER75 DNA T2_type -4 500 453 651 202 52 19 chr15 20038853 20039066 -81341455 - L1MCa LINE L1 -3969 2457 2238 781 211 40 46 chr15 20039072 20039376 -81341145 + L1MCa LINE L1 1918 2219 -4207 337 136 11 80 chr15 20039376 20039464 -81341057 - MLT1F1 LTR MaLR -233 334 253 309 284 55 37 chr15 20039552 20039661 -81340860 - MLT1F1 LTR MaLR -482 111 1 497 230 6 67 chr15 20039665 20039830 -81340691 - L1MD3 LINE L1 -282 7713 7559 3094 260 96 47 chr15 20040042 20041687 -81338834 - L1MC3 LINE L1 -6 7779 6033 1600 209 3 0 chr15 20041687 20041983 -81338538 - AluSx SINE Alu -15 297 1 3094 260 96 47 chr15 20041983 20042173 -81338348 - L1MC3 LINE L1 -1752 6033 5854 994 257 62 30 chr15 20042173 20042363 -81338158 - L1MC3 LINE L1 -720 5454 5272 2208 110 0 10 chr15 20042363 20042671 -81337850 + AluSc SINE Alu 4 308 -1 994 257 62 30 chr15 20042671 20043126 -81337395 - L1MC3 LINE L1 -902 5272 4781 * 1379 237 36 14 chr15 20043123 20043629 -81336892 - L1MC3 LINE L1 -2111 4035 3519 260 281 24 0 chr15 20043631 20043713 -81336808 + MLT1E LTR MaLR 350 433 -160 900 190 79 8 chr15 20043817 20044070 -81336451 + L1MD3 LINE L1 7724 7994 -1 2318 81 3 10 chr15 20044409 20044707 -81335814 + AluSc SINE Alu 1 296 -13 1013 270 61 10 chr15 20044921 20045317 -81335204 - L1MC3 LINE L1 -1504 6281 5866 808 228 58 83 chr15 20045387 20045826 -81334695 - MER66A LTR ERV1 -3 475 97 2008 262 66 32 chr15 20045926 20046557 -81333964 - L1MC3 LINE L1 -748 5398 4707 2004 119 13 50 chr15 20046557 20046875 -81333646 - AluSx SINE Alu -6 306 1 2008 262 66 32 chr15 20046875 20047419 -81333102 - L1MC3 LINE L1 -1439 4707 4183 2439 79 0 13 chr15 20047444 20047759 -81332762 - AluY SINE Alu 0 311 1 656 251 55 34 chr15 20047767 20048150 -81332371 - L1MC3 LINE L1 -2190 3956 3566 371 241 131 8 chr15 20048192 20048378 -81332143 + MLT1E LTR MaLR 418 593 0 467 258 38 22 chr15 20048380 20048647 -81331874 + L1MD3 LINE L1 7724 7994 -1 2196 108 0 10 chr15 20049554 20049849 -81330672 - AluY SINE Alu -15 296 5 1398 207 0 39 chr15 20049865 20050170 -81330351 - AluJo SINE Alu -19 293 1 606 265 35 5 chr15 20050172 20050372 -81330149 - L1MC3 LINE L1 -506 7279 7074 1449 291 39 39 chr15 20050386 20050659 -81329862 - L1M4 LINE L1 -1458 4688 4416 1750 118 0 8 chr15 20050659 20050904 -81329617 - AluSg SINE Alu -19 291 49 1449 291 39 39 chr15 20050904 20050999 -81329522 - L1M4 LINE L1 -1730 4416 4322 1684 157 78 28 chr15 20050999 20051356 -81329165 - THE1C LTR MaLR 0 375 1 1449 291 39 39 chr15 20051356 20052155 -81328366 - L1M4 LINE L1 -1823 4323 3520 373 249 296 6 chr15 20052163 20052332 -81328189 + MLT1E LTR MaLR 376 593 0 755 212 45 12 chr15 20052340 20052585 -81327936 + L1MD3 LINE L1 7731 7983 -12 1779 84 88 29 chr15 20052726 20052999 -81327522 - AluSg SINE Alu -21 289 1 687 239 7 0 chr15 20053232 20053421 -81327100 + FAM SINE Alu 1 56 0 1503 255 39 37 chr15 20053628 20054138 -81326383 + MER54A LTR ERVL 19 529 -372 185 160 0 20 chr15 20054184 20054234 -81326287 + (TAGA)n Simple_repeat Simple_repeat 3 51 0 1100 266 34 87 chr15 20054264 20054332 -81326189 - MLT2B3 LTR ERVL -54 500 430 2206 92 4 0 chr15 20054332 20054635 -81325886 - AluY SINE Alu 0 304 1 1100 266 34 87 chr15 20054635 20055092 -81325429 - MLT2B3 LTR ERVL -124 430 2 2475 201 54 2 chr15 20055095 20055673 -81324848 - ERVL-B3 LTR ERVL -20 5744 5137 1508 230 34 37 chr15 20055675 20056084 -81324437 - MSTC LTR MaLR 0 428 21 403 231 66 8 chr15 20056088 20056209 -81324312 - MSTC-int LTR MaLR -1 1734 1607 2419 230 8 69 chr15 20056271 20056998 -81323523 - LTR8 LTR ERV1 -8 683 1 962 258 39 13 chr15 20057001 20057307 -81323214 - HUERS-P1 LTR ERV1 -4 6259 5946 861 252 71 17 chr15 20057412 20057706 -81322815 - PRIMA41-int LTR ERV1 -105 6226 5917 5642 159 51 117 chr15 20057743 20058751 -81321770 - PRIMA41-int LTR ERV1 -299 5422 4350 1950 115 7 17 chr15 20058751 20059038 -81321483 - AluSc SINE Alu -25 284 1 5642 159 51 117 chr15 20059038 20059317 -81321204 - PRIMA41-int LTR ERV1 -1371 4350 4054 1488 180 29 67 chr15 20059317 20059492 -81321029 - AluJb SINE Alu -5 307 148 2213 112 0 3 chr15 20059492 20059786 -81320735 - AluSp SINE Alu -14 299 7 1488 180 29 67 chr15 20059786 20059926 -81320595 - AluJb SINE Alu -164 148 4 5642 159 51 117 chr15 20059926 20060561 -81319960 - PRIMA41-int LTR ERV1 -1667 4054 3729 765 195 124 28 chr15 20060575 20060857 -81319664 - LTR15 LTR ERV1 -18 475 167 3289 197 64 33 chr15 20061045 20061296 -81319225 - PRIMA41-int LTR ERV1 -1588 3292 3050 2389 86 23 0 chr15 20061296 20061598 -81318923 + AluY SINE Alu 1 309 -2 3289 197 64 33 chr15 20061598 20062358 -81318163 - PRIMA41-int LTR ERV1 -1830 3050 1210 1499 237 91 45 chr15 20062383 20062901 -81317620 - PRIMA41-int LTR ERV1 -5442 2095 366 1434 215 75 70 chr15 20062902 20063459 -81317062 - PRIMA41-int LTR ERV1 -5242 1021 462 575 288 0 12 chr15 20063613 20063776 -81316745 - PRIMA41-int LTR ERV1 -6062 201 41 1892 234 11 104 chr15 20063801 20064563 -81315958 - LTR8 LTR ERV1 0 691 1 2102 275 78 64 chr15 20064565 20065537 -81314984 - MSTC-int LTR MaLR -210 1441 449 372 22 0 0 chr15 20065537 20065582 -81314939 + (TG)n Simple_repeat Simple_repeat 2 46 0 2102 275 78 64 chr15 20065582 20065759 -81314762 - MSTC-int LTR MaLR -1202 449 276 7567 21 15 0 chr15 20065763 20066775 -81313746 - L1PA3 LINE L1 0 6155 5136 2620 19 0 0 chr15 20066775 20067097 -81313424 + L1PA3 LINE L1 4817 5138 -1008 709 250 123 35 chr15 20067090 20067146 -81313375 - MSTC-int LTR MaLR -1390 345 295 * 3748 122 80 5 chr15 20067146 20067745 -81312776 - LTR9B LTR ERV1 0 644 1 709 250 123 35 chr15 20067745 20068004 -81312517 - MSTC-int LTR MaLR -1440 295 2 763 193 9 71 chr15 20068006 20068216 -81312305 - MSTC LTR MaLR 0 428 232 1457 182 60 54 chr15 20068216 20068567 -81311954 - LTR10B LTR ERV1 0 547 195 892 179 49 27 chr15 20068691 20068914 -81311607 - MSTC LTR MaLR -193 235 8 775 164 42 12 chr15 20068919 20069084 -81311437 - ERVL-B3 LTR ERVL -624 5140 4971 * 6373 231 22 20 chr15 20069080 20070644 -81309877 - ERVL-B3 LTR ERVL -946 4818 3252 275 353 0 0 chr15 20071540 20071676 -81308845 - PRIMA41-int LTR ERV1 -499 4455 4320 467 339 14 42 chr15 20073438 20073660 -81306861 - PRIMA41-int LTR ERV1 -1990 5766 5539 1963 131 14 0 chr15 20073660 20073950 -81306571 - AluSg SINE Alu -16 294 1 2356 98 0 19 chr15 20073955 20074262 -81306259 - AluSg SINE Alu -9 301 1 467 339 14 42 chr15 20074262 20074464 -81306057 - PRIMA41-int LTR ERV1 -2221 5535 5348 10283 236 55 8 chr15 20075000 20077712 -81302809 - ERVL-B3 LTR ERVL -2905 2859 20 1924 239 35 44 chr15 20077744 20078153 -81302368 - MLT2B3 LTR ERVL -12 542 138 4086 163 23 40 chr15 20078153 20078423 -81302098 - LTR39 LTR ERV1 0 783 510 2233 121 0 0 chr15 20078423 20078729 -81301792 - AluSg SINE Alu -4 306 1 4086 163 23 40 chr15 20078729 20079255 -81301266 - LTR39 LTR ERV1 -273 510 1 1924 239 35 44 chr15 20079255 20079392 -81301129 - MLT2B3 LTR ERVL -416 138 1 1256 264 39 6 chr15 20079392 20079756 -81300765 + MER54A LTR ERVL 522 897 -4 278 343 86 0 chr15 20079946 20080086 -81300435 + HsTC2 DNA Tc2 2 153 -1745 296 264 187 25 chr15 20080175 20080304 -81300217 + HsTC2 DNA Tc2 1508 1615 -283 2051 123 33 41 chr15 20080304 20080669 -81299852 - THE1B LTR MaLR -2 362 1 296 264 187 25 chr15 20080669 20080854 -81299667 + HsTC2 DNA Tc2 1615 1873 -25 801 204 96 119 chr15 20080925 20081396 -81299125 - MER4C LTR ERV1 0 465 6 6241 169 50 43 chr15 20081397 20083238 -81297283 - MER4C-int LTR ERV1 -8 6590 4290 6999 30 1 1 chr15 20083242 20084115 -81296406 - L1PA4 LINE L1 -5 6150 5278 5660 40 0 0 chr15 20084115 20084835 -81295686 + L1P LINE L1 4309 5028 -1118 1091 145 52 76 chr15 20084835 20085124 -81295397 - LOR1-int LTR ERV1 -3404 4716 4435 647 168 0 0 chr15 20085127 20085228 -81295293 + AluJ/FLAM SINE Alu 1 101 -211 2273 141 71 2 chr15 20085229 20085625 -81294896 - LOR1-int LTR ERV1 -1415 5676 5254 2206 59 33 52 chr15 20087132 20087439 -81293082 - AluY SINE Alu -10 301 1 182 226 81 16 chr15 20088180 20088242 -81292279 + MER5B DNA MER1_type 113 178 0 2070 138 6 13 chr15 20089640 20089952 -81290569 + AluSx SINE Alu 1 310 -2 2524 28 0 0 chr15 20091356 20091640 -81288881 - L1PA3 LINE L1 -413 5742 5459 3703 31 12 0 chr15 20091640 20092052 -81288469 + L1PA3 LINE L1 5738 6155 0 1185 234 12 8 chr15 20092060 20092308 -81288213 - AluJo SINE Alu -30 282 34 621 207 5 113 chr15 20092571 20092784 -81287737 - LOR1-int LTR ERV1 -4145 3975 3786 329 273 45 45 chr15 20092916 20093048 -81287473 - LOR1-int LTR ERV1 -3492 4628 4497 * 541 196 129 57 chr15 20093042 20093322 -81287199 - LOR1-int LTR ERV1 -2568 4030 3731 1546 154 24 14 chr15 20093411 20094571 -81285950 + L1P LINE L1 2843 4164 -1982 744 239 22 39 chr15 20094644 20094689 -81285832 - MLT2B3 LTR ERVL 0 554 510 258 116 0 0 chr15 20094689 20094732 -81285789 + (TAGG)n Simple_repeat Simple_repeat 1 43 0 744 239 22 39 chr15 20094732 20094916 -81285605 - MLT2B3 LTR ERVL -44 510 329 556 317 53 41 chr15 20094985 20095379 -81285142 - L1MC3 LINE L1 -925 6860 6462 604 173 9 0 chr15 20095417 20095527 -81284994 - Tigger4(Zombi) DNA MER2_type 0 2731 2621 1228 177 80 121 chr15 20095528 20095940 -81284581 - MER83 LTR ERV1 -7 441 47 385 90 45 30 chr15 20095937 20096004 -81284517 - MER83 LTR ERV1 -344 104 37 * 2214 170 19 0 chr15 20096009 20096368 -81284153 - MER83-int LTR ERV1 -44 4241 3876 2131 133 57 17 chr15 20096345 20096699 -81283822 - MER83-int LTR ERV1 -1244 3041 2674 * 434 167 0 13 chr15 20096711 20096789 -81283732 - MER83-int LTR ERV1 -258 6073 5997 5640 177 84 26 chr15 20096889 20098309 -81282212 - MER83-int LTR ERV1 -523 5423 4059 4123 151 78 30 chr15 20098284 20098965 -81281556 - MER83-int LTR ERV1 -1802 3078 2350 * 2225 100 0 7 chr15 20098965 20099266 -81281255 - AluY SINE Alu -12 299 1 4123 151 78 30 chr15 20099266 20099397 -81281124 - MER83-int LTR ERV1 -2530 2350 2227 2621 168 58 33 chr15 20099395 20100302 -81280219 - MER83-int LTR ERV1 -193 1932 1075 * 3725 179 63 35 chr15 20100320 20101364 -81279157 - MER83-int LTR ERV1 -3725 1155 9 1293 164 82 108 chr15 20101375 20101753 -81278768 - MER83 LTR ERV1 -27 421 54 498 183 10 10 chr15 20101759 20101863 -81278658 - MER83 LTR ERV1 -344 104 1 34 0 0 0 chr15 20101887 20101921 -81278600 + AT_rich Low_complexity Low_complexity 1 34 0 237 83 0 0 chr15 20101923 20101959 -81278562 - HY3 scRNA scRNA -1 100 65 795 146 44 0 chr15 20101959 20102096 -81278425 - Tigger4(Zombi) DNA MER2_type -134 2597 2455 2238 99 7 0 chr15 20102111 20102415 -81278106 - AluSq SINE Alu -7 306 1 3188 187 134 8 chr15 20102415 20103168 -81277353 + Tigger3(Golem) DNA MER2_type 2182 3029 0 2014 131 67 25 chr15 20103178 20103538 -81276983 - MER51B LTR ERV1 -2 375 1 659 207 25 0 chr15 20103539 20103660 -81276861 - MER51B-int LTR ERV1 0 7816 7693 417 229 11 78 chr15 20103883 20104062 -81276459 - MER51B-int LTR ERV1 -6987 829 663 325 176 141 12 chr15 20104139 20104224 -81276297 - MER51B-int LTR ERV1 -3047 2539 2444 * 1680 195 56 125 chr15 20104223 20104817 -81275704 - MER51B-int LTR ERV1 -7263 553 1 1551 155 88 36 chr15 20104817 20105217 -81275304 - MER51B LTR ERV1 0 377 1 880 174 64 0 chr15 20105222 20105394 -81275127 - Tigger4(Zombi) DNA MER2_type -485 2246 2064 1226 270 55 42 chr15 20105427 20105676 -81274845 - L1MC3 LINE L1 -1375 6410 6166 2299 85 0 0 chr15 20105676 20106004 -81274517 - AluY SINE Alu 0 328 1 1226 270 55 42 chr15 20106004 20106297 -81274224 - L1MC3 LINE L1 -1619 6166 5860 708 210 51 56 chr15 20106311 20106748 -81273773 - L1M4 LINE L1 -734 5444 5003 4305 137 56 19 chr15 20106783 20107955 -81272566 + L1PA11 LINE L1 4824 6045 -129 6346 181 20 4 chr15 20107957 20109093 -81271428 + PRIMA41-int LTR ERV1 2740 3893 -3863 2172 108 7 3 chr15 20109184 20109480 -81271041 + AluY SINE Alu 1 297 -14 1252 268 93 80 chr15 20110368 20111130 -81269391 - LTR38B-int LTR ERV1 -971 815 44 938 242 52 121 chr15 20111136 20111632 -81268889 - LTR38B LTR ERV1 -55 555 94 725 136 20 8 chr15 20111641 20111778 -81268743 + L1PA11 LINE L1 6008 6150 -22 349 213 33 17 chr15 20111828 20111999 -81268522 - MLT1E LTR MaLR -15 578 346 1645 270 57 21 chr15 20112048 20112810 -81267711 + L1MC3 LINE L1 4625 5413 -749 1233 224 139 33 chr15 20112879 20113311 -81267210 + MER66A LTR ERV1 96 475 -3 807 223 64 16 chr15 20113358 20113609 -81266912 + L1MC3 LINE L1 5854 6116 -1669 588 15 0 0 chr15 20113613 20113680 -81266841 + L1PA3 LINE L1 6086 6152 -3 1455 246 87 56 chr15 20113728 20114426 -81266095 + L1MC3 LINE L1 6637 7356 -429 2143 130 0 0 chr15 20114445 20114744 -81265777 + AluSx SINE Alu 1 299 -13 429 191 34 177 chr15 20114777 20114905 -81265616 + L1MC3 LINE L1 5200 5269 -915 1232 212 42 46 chr15 20114905 20115188 -81265333 + AluJo SINE Alu 1 282 -30 429 191 34 177 chr15 20115188 20115360 -81265161 + L1MC3 LINE L1 5269 5464 -720 2204 100 0 3 chr15 20115380 20115669 -81264852 - AluY SINE Alu -23 288 1 1347 230 74 14 chr15 20115669 20116086 -81264435 + L1MC3 LINE L1 5858 6299 -1486 8929 98 7 3 chr15 20116237 20117476 -81263045 + L1P LINE L1 2 1245 -4901 609 277 124 0 chr15 20119242 20119516 -81261005 - L2 LINE L2 -2412 902 595 2237 168 31 120 chr15 20119565 20120180 -81260341 - MER7C DNA MER2_type -42 560 1 332 276 156 33 chr15 20120183 20120458 -81260063 - L2 LINE L2 -2793 521 213 3461 141 55 35 chr15 20120827 20121485 -81259036 - LTR1 LTR ERV1 -81 704 34 610 105 29 48 chr15 20121578 20121683 -81258838 - MER41-int LTR ERV1 -1229 4717 4615 2575 53 3 22 chr15 20121683 20122002 -81258519 - L1PA5 LINE L1 0 6154 5842 2107 254 103 35 chr15 20122102 20123261 -81257260 + L1M4 LINE L1 2585 3823 -2323 503 264 70 82 chr15 20125851 20126507 -81254014 + HSREP522 Satellite telomeric 1 648 -179 1455 186 53 82 chr15 20126656 20126944 -81253577 - MLT1A1 LTR MaLR 0 365 87 2174 117 3 0 chr15 20126944 20127273 -81253248 - AluSg SINE Alu 0 330 1 1455 186 53 82 chr15 20127273 20127358 -81253163 - MLT1A1 LTR MaLR -278 87 1 195 114 0 0 chr15 20128736 20128771 -81251750 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1895 122 0 25 chr15 20128798 20129084 -81251437 - AluSq SINE Alu -24 289 11 2073 111 17 10 chr15 20129199 20129497 -81251024 - AluSq SINE Alu -13 300 1 930 148 7 0 chr15 20129498 20129640 -81250881 - AluY SINE Alu -168 143 1 1135 172 128 35 chr15 20130648 20130938 -81249583 - SST1 Satellite centromeric 0 1563 1247 772 154 16 0 chr15 20130975 20131098 -81249423 + AluSg/x SINE Alu 157 281 -31 233 118 0 0 chr15 20131209 20131243 -81249278 + (A)n Simple_repeat Simple_repeat 1 34 0 7240 158 24 17 chr15 20131329 20132715 -81247806 - SST1 Satellite centromeric -167 1396 1 1327 294 60 48 chr15 20133393 20134211 -81246310 - SST1 Satellite centromeric -471 1092 261 357 102 0 0 chr15 20134211 20134270 -81246251 + (CCCCAG)n Simple_repeat Simple_repeat 5 63 0 1327 294 60 48 chr15 20134270 20134314 -81246207 - SST1 Satellite centromeric -1302 261 219 215 315 198 0 chr15 20134600 20134711 -81245810 + MER5A DNA MER1_type 55 187 -2 379 273 23 23 chr15 20134787 20134919 -81245602 + L2 LINE L2 2927 3058 -214 291 298 22 10 chr15 20135259 20135378 -81245143 + MIR SINE MIR 33 152 -65 25 31 0 0 chr15 20136472 20136504 -81244017 + AT_rich Low_complexity Low_complexity 1 32 0 306 267 165 81 chr15 20136833 20137069 -81243452 - MLT1L LTR MaLR -225 390 135 499 273 31 0 chr15 20137221 20137349 -81243172 - L2 LINE L2 -2 3311 3180 495 256 81 24 chr15 20137496 20137663 -81242858 - L1ME LINE L1 -324 5797 5614 661 238 0 0 chr15 20137663 20137789 -81242732 + FLAM_A SINE Alu 1 126 -7 495 256 81 24 chr15 20137789 20137832 -81242689 - L1ME LINE L1 -507 5614 5575 294 281 0 0 chr15 20137841 20138005 -81242516 + (CAT)n Simple_repeat Simple_repeat 1 164 0 * 582 123 8 75 chr15 20137891 20138221 -81242300 + (CACCAT)n Simple_repeat Simple_repeat 1 307 0 218 294 0 0 chr15 20139641 20139709 -81240812 + (CA)n Simple_repeat Simple_repeat 2 69 0 2130 104 10 10 chr15 20141193 20141501 -81239020 - AluY SINE Alu -3 308 1 217 281 94 62 chr15 20141767 20141895 -81238626 - MIR SINE MIR -19 243 112 589 253 103 19 chr15 20142027 20142339 -81238182 + L1MEd LINE L1 902 1239 -4880 398 297 86 51 chr15 20142359 20142756 -81237765 + L1MEd LINE L1 1254 1734 -4440 413 260 54 84 chr15 20143095 20143464 -81237057 - L1M4 LINE L1 -2260 3886 3529 267 161 58 46 chr15 20143575 20143662 -81236859 + MLT1E LTR MaLR 495 582 -11 718 220 42 15 chr15 20143669 20143928 -81236593 + L1MD3 LINE L1 7721 7986 -9 1890 14 5 0 chr15 20145275 20145494 -81235027 - L1PA3 LINE L1 -4 6151 5932 337 300 25 25 chr15 20146773 20146893 -81233628 + HsTC2 DNA Tc2 35 154 -1744 330 242 173 81 chr15 20146890 20147009 -81233512 + HsTC2 DNA Tc2 1233 1340 -558 * 2040 144 0 25 chr15 20147009 20147329 -81233192 + AluSx SINE Alu 1 312 0 330 242 173 81 chr15 20147329 20147544 -81232977 + HsTC2 DNA Tc2 1340 1774 -124 257 257 27 14 chr15 20147719 20147793 -81232728 - MIR SINE MIR -48 214 140 21 0 0 0 chr15 20148001 20148022 -81232499 + AT_rich Low_complexity Low_complexity 1 21 0 303 28 0 0 chr15 20148168 20148204 -81232317 + (TA)n Simple_repeat Simple_repeat 2 37 0 1051 128 14 0 chr15 20148239 20148387 -81232134 - AluSx SINE Alu -149 163 14 519 267 74 27 chr15 20148496 20148792 -81231729 + HsTC2 DNA Tc2 1233 1718 -180 457 129 0 0 chr15 20148817 20148887 -81231634 + Alu SINE Alu 234 303 -9 896 208 113 14 chr15 20148900 20149193 -81231328 - L1MC3 LINE L1 -25 7760 7439 2082 196 39 4 chr15 20149231 20149989 -81230532 - L1P5 LINE L1 -606 5548 4767 271 269 47 35 chr15 20150726 20150897 -81229624 - L1PA15-16 LINE L1 -6436 413 241 31282 44 4 3 chr15 20151120 20156019 -81224502 + L1PA4 LINE L1 1259 6155 0 1803 235 120 79 chr15 20156143 20157397 -81223124 + L1MC3 LINE L1 6474 7779 -6 259 313 20 20 chr15 20157874 20158021 -81222500 + L1MC3 LINE L1 92 238 -6158 290 206 110 14 chr15 20158283 20158356 -81222165 - MLT1E LTR MaLR -159 434 355 1015 284 38 42 chr15 20158373 20158975 -81221546 + L1MC3 LINE L1 3597 4196 -2019 1268 272 68 21 chr15 20159013 20159901 -81220620 + L1MC3 LINE L1 4602 5523 -730 956 258 126 17 chr15 20159901 20160424 -81220097 + L1MC3 LINE L1 5923 6502 -1352 435 261 74 102 chr15 20160458 20161055 -81219466 + L1MC3 LINE L1 6668 7195 -659 347 325 64 29 chr15 20161066 20161411 -81219110 + L1PA15-16 LINE L1 2 358 -6491 3348 214 14 27 chr15 20161679 20162604 -81217917 - LTR57-int LTR ERVL -3822 1521 609 1402 194 33 23 chr15 20162528 20163061 -81217460 - LTR38B-int LTR ERV1 -2351 1934 1341 * 411 319 59 28 chr15 20163395 20163649 -81216872 - LTR38B-int LTR ERV1 -1412 374 113 479 262 87 42 chr15 20163713 20164231 -81216290 - LTR38B LTR ERV1 0 611 64 394 299 109 0 chr15 20164916 20165100 -81215421 - L1MEc LINE L1 -6078 318 115 601 180 44 16 chr15 20165593 20165776 -81214745 - L1MCa LINE L1 -3996 2430 2243 295 132 0 0 chr15 20165792 20165860 -81214661 + L1MCa LINE L1 1921 1988 -4438 447 224 39 75 chr15 20165881 20165901 -81214620 + L1MCa LINE L1 1974 1993 -4433 1975 130 3 23 chr15 20165901 20166201 -81214320 + AluSx SINE Alu 2 295 -17 447 224 39 75 chr15 20166201 20166435 -81214086 + L1MCa LINE L1 1993 2219 -4207 282 291 97 24 chr15 20166497 20166662 -81213859 - MLT1E LTR MaLR -333 260 84 239 229 220 18 chr15 20166746 20166855 -81213666 - L1MC4 LINE L1 -421 7621 7491 21 0 0 0 chr15 20166986 20167007 -81213514 + AT_rich Low_complexity Low_complexity 1 21 0 39 0 0 0 chr15 20167100 20167139 -81213382 + AT_rich Low_complexity Low_complexity 1 39 0 968 205 111 3 chr15 20167140 20167428 -81213093 - L1MC3 LINE L1 -19 7766 7448 962 258 18 40 chr15 20167434 20167564 -81212957 - L1MC3 LINE L1 -384 7401 7270 1885 151 6 26 chr15 20167564 20167876 -81212645 - AluJo SINE Alu -6 306 1 962 258 18 40 chr15 20167876 20168071 -81212450 - L1MC3 LINE L1 -515 7270 7083 1285 285 66 46 chr15 20168089 20168965 -81211556 - L1M4 LINE L1 -1453 4693 3787 180 0 0 0 chr15 20168965 20168985 -81211536 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1285 285 66 46 chr15 20168985 20169259 -81211262 - L1M4 LINE L1 -2359 3787 3520 395 208 52 7 chr15 20169300 20169435 -81211086 + MLT1E LTR MaLR 422 593 0 667 256 24 12 chr15 20169442 20169692 -81210829 + L1MD3 LINE L1 7731 7983 -12 22 0 0 0 chr15 20169782 20169804 -81210717 + AT_rich Low_complexity Low_complexity 1 22 0 349 269 15 15 chr15 20170052 20170182 -81210339 + L1ME1 LINE L1 6011 6140 -26 610 242 6 38 chr15 20170249 20170406 -81210115 + FAM SINE Alu 3 154 -31 471 35 0 0 chr15 20170408 20170465 -81210056 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 2356 77 0 3 chr15 20170522 20170820 -81209701 - AluY SINE Alu -14 297 1 1840 244 32 25 chr15 20170946 20171471 -81209050 + MER54A LTR ERVL 1 529 -372 249 139 0 0 chr15 20171509 20171552 -81208969 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 1626 230 28 83 chr15 20171560 20172125 -81208396 - MLT2B3 LTR ERVL -20 534 1 2603 209 16 5 chr15 20172125 20172736 -81207785 - ERVL-B3 LTR ERVL -7 5757 5140 1770 214 33 33 chr15 20172739 20173165 -81207356 - MSTC LTR MaLR 0 428 3 2343 231 20 52 chr15 20173352 20174041 -81206480 - LTR8 LTR ERV1 -9 682 16 1148 261 19 13 chr15 20174077 20174388 -81206133 - HUERS-P1 LTR ERV1 -5 6258 5946 6845 189 65 74 chr15 20174493 20175744 -81204777 - MER41-int LTR ERV1 -105 6226 4965 2361 77 7 3 chr15 20175744 20176054 -81204467 + AluY SINE Alu 1 311 0 6845 189 65 74 chr15 20176054 20176407 -81204114 - MER41-int LTR ERV1 -1366 4965 4610 1548 193 18 11 chr15 20176407 20176692 -81203829 - AluJo SINE Alu -23 289 3 6845 189 65 74 chr15 20176692 20178598 -81201923 - MER41-int LTR ERV1 -1721 4610 1816 1064 235 89 89 chr15 20178658 20179151 -81201370 - MER41-int LTR ERV1 -4114 3423 2931 2554 223 33 27 chr15 20179166 20180020 -81200501 - MER41-int LTR ERV1 -2594 2286 1280 894 218 66 9 chr15 20180020 20180361 -81200160 - LTR8 LTR ERV1 -364 363 1 899 284 61 78 chr15 20180361 20180892 -81199629 - MSTC-int LTR MaLR -221 1430 923 413 155 0 0 chr15 20180906 20180990 -81199531 + MSTC LTR MaLR 345 428 0 460 222 5 123 chr15 20180990 20181193 -81199328 + MSTC-int LTR MaLR 1 179 -1472 3012 217 11 10 chr15 20181195 20181896 -81198625 - ERVL-B3 LTR ERVL -1001 4763 4062 3216 265 82 12 chr15 20182102 20183321 -81197200 - ERVL-B3 LTR ERVL -4369 1285 10 1738 226 49 55 chr15 20183340 20183752 -81196769 - MLT2B3 LTR ERVL -8 546 136 4177 179 21 8 chr15 20183752 20184525 -81195996 - LTR39 LTR ERV1 0 783 1 1738 226 49 55 chr15 20184525 20184661 -81195860 - MLT2B3 LTR ERVL -418 136 1 1159 249 49 12 chr15 20184676 20185022 -81195499 + MER54A LTR ERVL 538 896 -5 395 273 106 48 chr15 20185350 20185677 -81194844 + HsTC2 DNA Tc2 1236 1543 -355 4766 51 10 0 chr15 20185677 20186262 -81194259 + LTR10C LTR ERV1 1 591 0 395 273 106 48 chr15 20186262 20186372 -81194149 + HsTC2 DNA Tc2 1543 1874 -24 545 215 81 6 chr15 20186452 20186624 -81193897 - MER4C LTR ERV1 -1 464 280 388 223 58 6 chr15 20186683 20186906 -81193615 - MER4C LTR ERV1 -196 269 6 6950 180 49 58 chr15 20186907 20189059 -81191462 - LTR38-int LTR ERV1 -8 6590 4088 1593 196 7 17 chr15 20189059 20189360 -81191161 + AluJb SINE Alu 1 298 -14 6950 180 49 58 chr15 20189360 20189866 -81190655 - LTR38-int LTR ERV1 -2510 4088 3579 1586 206 61 80 chr15 20189871 20189902 -81190619 - LTR38-int LTR ERV1 -1863 3017 2987 1548 211 0 20 chr15 20189902 20190196 -81190325 - AluJo SINE Alu -18 294 7 1586 206 61 80 chr15 20190196 20190752 -81189769 - LTR38-int LTR ERV1 -1893 2987 2441 401 122 27 0 chr15 20190754 20190828 -81189693 - L1PA15 LINE L1 -16 6149 6074 341 204 122 10 chr15 20190959 20191057 -81189464 - LTR38-int LTR ERV1 -5232 1099 991 329 55 14 0 chr15 20191062 20191108 -81189413 - LTR38-int LTR ERV1 -4793 1153 150 481 212 36 15 chr15 20191286 20191423 -81189098 - LTR38-int LTR ERV1 -6346 252 113 1163 202 72 118 chr15 20191518 20192003 -81188518 - MER4C LTR ERV1 0 465 3 236 257 87 22 chr15 20192257 20192440 -81188081 - L1M4 LINE L1 -1079 5067 4873 2016 135 10 19 chr15 20192500 20192686 -81187835 - AluSg SINE Alu -2 308 125 207 0 0 0 chr15 20192686 20192709 -81187812 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2016 135 10 19 chr15 20192709 20192833 -81187688 - AluSg SINE Alu -185 125 1 1134 235 78 35 chr15 20193031 20193456 -81187065 + LTR47B LTR ERVL 1 443 0 1958 311 54 60 chr15 20194500 20196236 -81184285 - LTR38-int LTR ERV1 -3414 3708 1983 784 314 17 25 chr15 20196709 20197066 -81183455 - LTR38-int LTR ERV1 -5860 1262 909 355 303 72 60 chr15 20197360 20197611 -81182910 - LTR38-int LTR ERV1 -6387 735 482 276 355 58 0 chr15 20198171 20198292 -81182229 - LTR38-int LTR ERV1 -971 815 688 930 319 28 35 chr15 20198542 20198937 -81181584 - LTR38-int LTR ERV1 -1342 444 53 3710 102 7 48 chr15 20198958 20199567 -81180954 - L1PA13 LINE L1 -186 5977 5394 1167 192 8 0 chr15 20199564 20199798 -81180723 + L1P LINE L1 3265 3500 -2646 * 22 0 0 0 chr15 20199896 20199918 -81180603 + AT_rich Low_complexity Low_complexity 1 22 0 2871 198 64 3 chr15 20200243 20200854 -81179667 + LTR39 LTR ERV1 1 648 -135 1862 148 0 0 chr15 20200854 20201169 -81179352 - AluSq SINE Alu 0 315 1 915 148 113 4 chr15 20201298 20201527 -81178994 - L1MCa LINE L1 -3961 2465 2212 802 200 39 71 chr15 20201534 20201814 -81178707 + L1MCa LINE L1 1939 2209 -4217 863 299 83 25 chr15 20201814 20202138 -81178383 - MLT1E LTR MaLR -250 343 1 421 313 7 7 chr15 20202142 20202292 -81178229 - L1MD3 LINE L1 -282 7713 7564 3573 254 79 45 chr15 20202527 20204003 -81176518 - L1MC3 LINE L1 -6 7779 6254 2109 286 31 18 chr15 20203993 20204871 -81175650 - L1M4 LINE L1 -1722 4424 3536 * 291 304 10 29 chr15 20204871 20204973 -81175548 + MLT1E LTR MaLR 334 433 -160 634 187 44 128 chr15 20205087 20205338 -81175183 + L1MD3 LINE L1 7753 7982 -13 2271 88 3 0 chr15 20206680 20206974 -81173547 + AluY SINE Alu 3 297 -14 1639 231 5 44 chr15 20208086 20208288 -81172233 + MER54A LTR ERVL 1 181 -720 2658 113 10 12 chr15 20208288 20208705 -81171816 - L1PB1 LINE L1 0 6151 5736 1639 231 5 44 chr15 20208705 20208908 -81171613 + MER54A LTR ERVL 181 390 -511 603 197 29 7 chr15 20208952 20209089 -81171432 - L1MD3 LINE L1 -281 7714 7575 1734 182 116 31 chr15 20209327 20209734 -81170787 - L1MC3 LINE L1 -7 7778 7326 1188 177 3 125 chr15 20209734 20210078 -81170443 - AluJb SINE Alu 0 302 1 1734 182 116 31 chr15 20210078 20210127 -81170394 - L1MC3 LINE L1 -459 7326 7283 405 246 34 17 chr15 20210224 20210303 -81170218 - L1MC3 LINE L1 -740 7045 6969 2078 137 0 0 chr15 20210303 20210596 -81169925 - AluSx SINE Alu -19 293 1 405 246 34 17 chr15 20210596 20210691 -81169830 - L1MC3 LINE L1 -816 6969 6868 913 256 40 7 chr15 20210949 20211246 -81169275 + L1MC3 LINE L1 5861 6167 -1618 1223 210 62 74 chr15 20211364 20211764 -81168757 - MER66A LTR ERV1 -3 475 97 3714 269 63 26 chr15 20211894 20213665 -81166856 - L1M4 LINE L1 -744 5402 3567 412 167 43 88 chr15 20213704 20213890 -81166631 + MLT1F1 LTR MaLR 346 567 0 806 231 30 11 chr15 20213892 20214156 -81166365 + L1MD3 LINE L1 7724 7992 -3 349 297 54 0 chr15 20216259 20216396 -81164125 + HsTC2 DNA Tc2 3 154 -1744 * 704 271 31 57 chr15 20216393 20216874 -81163647 + HsTC2 DNA Tc2 1233 1873 -25 355 333 49 27 chr15 20217144 20217369 -81163152 - L1M4 LINE L1 -1034 5112 4883 1273 232 0 20 chr15 20217502 20217808 -81162713 - AluJo SINE Alu -2 300 1 564 222 11 103 chr15 20218887 20219072 -81161449 - LTR36-int LTR ERV1 -4167 3953 3786 1020 209 33 38 chr15 20219160 20219593 -81160928 - LTR36-int LTR ERV1 -2148 4183 3731 5201 180 76 76 chr15 20219631 20221522 -81158999 - LTR36-int LTR ERV1 -2869 3729 682 1514 200 36 17 chr15 20221511 20222040 -81158481 - LTR36-int LTR ERV1 -2351 1934 1341 * 487 321 56 24 chr15 20222372 20222624 -81157897 - LTR36-int LTR ERV1 -1412 374 115 592 268 118 60 chr15 20222690 20223208 -81157313 - LTR36 LTR ERV1 0 611 64 279 0 0 0 chr15 20223345 20223376 -81157145 + (T)n Simple_repeat Simple_repeat 1 31 0 7878 5 0 0 chr15 20223876 20224761 -81155760 + L1HS LINE L1 5271 6155 0 994 136 0 23 chr15 20224767 20224943 -81155578 + L1MC/D LINE L1 5283 5454 -879 328 141 0 31 chr15 20224917 20224981 -81155540 - L1MC1 LINE L1 -127 6206 6145 * 516 288 110 5 chr15 20225520 20225739 -81154782 - L1MEc LINE L1 -6054 342 101 724 177 111 0 chr15 20226222 20226420 -81154101 - L1MCa LINE L1 -3996 2430 2211 559 191 23 159 chr15 20226416 20226527 -81153994 + L1MCa LINE L1 1919 2043 -4383 * 1854 144 0 33 chr15 20226527 20226833 -81153688 + AluSx SINE Alu 1 296 -16 559 191 23 159 chr15 20226833 20227067 -81153454 + L1MCa LINE L1 2043 2217 -4209 487 306 150 20 chr15 20227079 20227373 -81153148 - MLT1E LTR MaLR -259 334 3 240 248 220 18 chr15 20227380 20227489 -81153032 - L1MC4 LINE L1 -421 7621 7491 37 0 0 0 chr15 20227734 20227771 -81152750 + AT_rich Low_complexity Low_complexity 1 37 0 1774 218 132 25 chr15 20227778 20228202 -81152319 - L1MC3 LINE L1 -23 7762 7262 1824 157 10 26 chr15 20228202 20228515 -81152006 - AluJo SINE Alu -4 308 1 1774 218 132 25 chr15 20228515 20228649 -81151872 - L1MC3 LINE L1 -523 7262 7144 1504 281 61 52 chr15 20228689 20229853 -81150668 - L1M4 LINE L1 -1453 4693 3520 453 222 82 0 chr15 20229894 20230029 -81150492 + MLT1F1 LTR MaLR 422 567 0 771 253 24 8 chr15 20230037 20230286 -81150235 + L1MD3 LINE L1 7731 7983 -12 22 0 0 0 chr15 20230376 20230398 -81150123 + AT_rich Low_complexity Low_complexity 1 22 0 619 229 6 38 chr15 20230649 20230806 -81149715 + FAM SINE Alu 3 154 -31 2081 110 7 3 chr15 20230883 20231184 -81149337 - AluY SINE Alu -9 302 1 1926 249 32 25 chr15 20231329 20231854 -81148667 + MER54A LTR ERVL 1 529 -372 248 143 18 0 chr15 20231890 20231946 -81148575 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 1787 245 32 36 chr15 20231965 20232467 -81148054 - MLT2B3 LTR ERVL -54 500 1 2799 208 25 3 chr15 20232467 20233072 -81147449 - ERVL-B3 LTR ERVL -7 5757 5140 1761 199 40 42 chr15 20233075 20233502 -81147019 - MSTC LTR MaLR 0 428 3 2414 236 23 54 chr15 20233690 20234377 -81146144 - LTR8 LTR ERV1 -10 681 16 1211 258 23 13 chr15 20234413 20234723 -81145798 - HUERS-P1 LTR ERV1 -5 6258 5946 961 208 177 14 chr15 20234804 20235098 -81145423 - LTR49-int LTR ERV1 -57 6274 5933 5036 192 50 59 chr15 20235148 20236437 -81144084 - LTR49-int LTR ERV1 -541 5790 4514 1537 207 11 3 chr15 20236437 20236722 -81143799 - AluJo SINE Alu -23 289 3 5036 192 50 59 chr15 20236722 20236874 -81143647 - LTR49-int LTR ERV1 -1817 4514 4362 4097 169 49 43 chr15 20236870 20238030 -81142491 + MER4C-int LTR ERV1 4958 6590 -8 * 1094 182 126 90 chr15 20238031 20238475 -81142046 + MER4C LTR ERV1 6 465 0 470 262 111 40 chr15 20238554 20238664 -81141857 - HsTC2 DNA Tc2 -24 1874 1773 4795 46 10 0 chr15 20238664 20239249 -81141272 - LTR10C LTR ERV1 0 591 1 470 262 111 40 chr15 20239249 20239570 -81140951 - HsTC2 DNA Tc2 -125 1773 1236 1187 228 37 50 chr15 20239897 20240277 -81140244 - MER54A LTR ERVL -4 897 523 446 216 67 15 chr15 20240277 20240411 -81140110 + MLT2B3 LTR ERVL 1 141 -413 2283 148 46 16 chr15 20240412 20240845 -81139676 + LTR39 LTR ERV1 1 446 -337 18581 45 1 2 chr15 20240845 20243306 -81137215 - L1P LINE L1 -2556 3590 1134 616 284 75 17 chr15 20243312 20243777 -81136744 - L1M4 LINE L1 -2001 4145 3654 1449 204 10 60 chr15 20245195 20245509 -81135012 - AluJo SINE Alu -4 298 1 450 263 258 5 chr15 20245513 20245711 -81134810 + MLT1E LTR MaLR 346 593 0 870 197 30 17 chr15 20245738 20245972 -81134549 + L1MD3 LINE L1 7745 7981 -14 815 201 0 0 chr15 20246005 20246149 -81134372 + FRAM SINE Alu 13 156 -20 1551 196 0 18 chr15 20246879 20247160 -81133361 + AluJb SINE Alu 1 276 -36 481 182 0 25 chr15 20247160 20247281 -81133240 + GA-rich Low_complexity Low_complexity 3 120 0 864 203 121 118 chr15 20248533 20248981 -81131540 - LTR47A LTR ERVL -2 450 2 717 239 52 124 chr15 20249142 20249756 -81130765 - LTR38B LTR ERV1 0 610 41 358 260 42 0 chr15 20250219 20250315 -81130206 - PABL_B-int LTR ERV1 -446 6676 6577 268 274 0 0 chr15 20250258 20250331 -81130190 - HERVL18 LTR ERVL -300 5747 5675 * 861 296 55 26 chr15 20250334 20250828 -81129693 - PABL_B-int LTR ERV1 -589 7167 6660 256 312 9 9 chr15 20251043 20251152 -81129369 - PABL_B-int LTR ERV1 -1309 6447 6339 479 350 13 16 chr15 20251830 20252133 -81128388 - PABL_B-int LTR ERV1 -2913 4209 3908 2298 177 60 11 chr15 20253087 20253945 -81126576 - L1P5 LINE L1 -479 5675 4767 615 303 73 72 chr15 20253956 20255143 -81125378 - L1PA15-16 LINE L1 -5685 1165 1 2129 248 98 55 chr15 20255161 20255672 -81124849 - L1MC3 LINE L1 -659 7195 6708 240 59 0 0 chr15 20255672 20255706 -81124815 + (CA)n Simple_repeat Simple_repeat 1 34 0 2129 248 98 55 chr15 20255706 20256414 -81124107 - L1MC3 LINE L1 -1146 6708 5923 1183 253 40 22 chr15 20256414 20257084 -81123437 - L1MC3 LINE L1 -720 5523 4846 1090 264 35 31 chr15 20257099 20257611 -81122910 - L1MC3 LINE L1 -2105 4110 3597 249 295 13 0 chr15 20257618 20257696 -81122825 + MLT1E LTR MaLR 345 423 -170 358 259 164 9 chr15 20257808 20258028 -81122493 + L1MD3 LINE L1 7733 7986 -9 400 277 130 30 chr15 20259349 20259580 -81120941 - L1MC3 LINE L1 -6051 345 92 386 284 22 0 chr15 20259699 20259833 -81120688 - L1MD3 LINE L1 -288 7707 7571 1079 163 0 0 chr15 20259935 20260095 -81120426 + AluSx SINE Alu 1 160 -152 1080 275 65 2 chr15 20260100 20260565 -81119956 - L1M4 LINE L1 -872 5554 5061 * 1093 254 86 11 chr15 20260563 20261040 -81119481 - L1MCa LINE L1 -2115 4311 3799 343 238 12 0 chr15 20261041 20261121 -81119400 + MLT1E LTR MaLR 349 429 -164 1051 183 53 0 chr15 20261222 20261468 -81119053 + L1MD3 LINE L1 7724 7982 -13 2206 146 25 3 chr15 20262085 20262441 -81118080 - THE1B LTR MaLR 0 364 1 1646 209 6 3 chr15 20264274 20264609 -81115912 + MER54A LTR ERVL 24 359 -542 674 203 14 0 chr15 20264668 20264811 -81115710 - L1MD3 LINE L1 -282 7713 7569 813 221 42 8 chr15 20265041 20265303 -81115218 - L1MC3 LINE L1 -4 7781 7511 292 260 20 20 chr15 20265431 20265531 -81114990 + HERVL18 LTR ERVL 1225 1324 -4723 357 356 24 0 chr15 20266191 20266399 -81114122 + HERVL18 LTR ERVL 1852 2064 -3279 620 360 29 23 chr15 20266494 20266743 -81113778 + HERVL18 LTR ERVL 2312 2558 -2785 1952 169 0 13 chr15 20266743 20267057 -81113464 + AluSx SINE Alu 1 310 -2 620 360 29 23 chr15 20267057 20267496 -81113025 + HERVL18 LTR ERVL 2558 3004 -2339 999 251 34 17 chr15 20267690 20268309 -81112212 - L1MCa LINE L1 -3584 2842 2213 962 207 20 47 chr15 20268315 20268615 -81111906 + L1MCa LINE L1 1925 2216 -4210 386 297 157 13 chr15 20268623 20268852 -81111669 - MLT1E LTR MaLR -253 340 79 639 212 0 20 chr15 20268951 20269102 -81111419 - L1MD3 LINE L1 -283 7712 7565 1522 218 105 4 chr15 20269351 20269810 -81110711 - L1MC3 LINE L1 -6 7779 7275 5936 72 12 1 chr15 20269810 20270624 -81109897 - MER11B LTR ERVK -413 823 1 5978 199 32 56 chr15 20270636 20273343 -81107178 - L1MA1 LINE L1 -17 6285 3654 1403 205 6 75 chr15 20274305 20274627 -81105894 - AluJo SINE Alu -2 300 1 476 253 258 5 chr15 20274631 20274829 -81105692 + MLT1E LTR MaLR 346 593 0 793 225 29 16 chr15 20274856 20275100 -81105421 + L1MD3 LINE L1 7745 7991 -4 794 207 0 0 chr15 20275123 20275268 -81105253 + FRAM SINE Alu 13 157 -19 31 26 0 0 chr15 20275621 20275659 -81104862 + AT_rich Low_complexity Low_complexity 1 38 0 327 283 0 22 chr15 20275858 20275950 -81104571 + L1MC4 LINE L1 6614 6703 -1339 339 300 0 0 chr15 20275952 20276042 -81104479 + L1MC4 LINE L1 6614 6703 -1339 1566 204 19 16 chr15 20276182 20276491 -81104030 + AluJb SINE Alu 3 312 0 254 140 0 20 chr15 20276510 20276560 -81103961 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 966 138 170 167 chr15 20277833 20278281 -81102240 - LTR47A LTR ERVL -2 450 2 895 253 38 112 chr15 20278442 20279101 -81101420 - LTR38B LTR ERV1 0 610 1 1525 306 53 38 chr15 20279298 20280450 -81100071 - LTR38B-int LTR ERV1 -251 7505 6337 1517 328 54 39 chr15 20281111 20282785 -81097736 - PABL_B-int LTR ERV1 -2913 4209 2511 277 273 45 0 chr15 20283000 20283088 -81097433 - PABL_B-int LTR ERV1 -4824 2298 2207 365 209 33 22 chr15 20283218 20283309 -81097212 - PABL_B-int LTR ERV1 -5045 2077 1986 627 325 18 24 chr15 20283802 20284134 -81096387 - PABL_B-int LTR ERV1 -5861 1261 932 287 339 58 0 chr15 20285321 20285442 -81095079 - PABL_B-int LTR ERV1 -971 815 688 782 304 38 46 chr15 20285693 20286088 -81094433 - PABL_B-int LTR ERV1 -1342 444 53 3516 104 10 45 chr15 20286109 20286714 -81093807 - L1PA13 LINE L1 -186 5977 5394 1105 188 8 0 chr15 20286711 20286945 -81093576 + L1P LINE L1 3265 3500 -2646 * 22 80 0 0 chr15 20287043 20287093 -81093428 + AT_rich Low_complexity Low_complexity 1 50 0 2753 182 66 5 chr15 20287387 20287990 -81092531 + LTR39 LTR ERV1 1 640 -143 1881 148 0 0 chr15 20287998 20288313 -81092208 - AluSq SINE Alu 0 315 1 618 212 7 22 chr15 20288313 20288450 -81092071 - AluJo SINE Alu -177 135 1 1374 90 0 0 chr15 20290172 20290350 -81090171 + AluSx SINE Alu 1 178 -134 299 271 69 62 chr15 20290380 20290868 -81089653 - LTR38B LTR ERV1 -65 545 1 243 88 0 0 chr15 20291278 20291312 -81089209 + (TG)n Simple_repeat Simple_repeat 2 35 0 309 346 0 0 chr15 20291388 20291492 -81089029 - PABL_B-int LTR ERV1 -378 6744 6641 1353 261 127 44 chr15 20291559 20292491 -81088030 - L1MC3 LINE L1 -913 7152 6144 583 261 51 5 chr15 20292502 20292864 -81087657 - L1MC3 LINE L1 -725 5733 5355 1669 176 168 8 chr15 20292916 20293285 -81087236 - MSTA LTR MaLR 0 428 1 5480 180 10 14 chr15 20293287 20294317 -81086204 - MSTA-int LTR MaLR -2 1578 553 541 316 128 6 chr15 20294656 20294976 -81085545 - L1MC3 LINE L1 -1033 5393 5035 22 88 0 0 chr15 20296060 20296117 -81084404 + AT_rich Low_complexity Low_complexity 1 57 0 600 201 69 0 chr15 20298028 20298202 -81082319 - L1MA7 LINE L1 0 6291 6106 1949 267 37 11 chr15 20298445 20299602 -81080919 - L1MC3 LINE L1 -3016 3410 2222 313 222 94 8 chr15 20299607 20299724 -81080797 + L1MCa LINE L1 1938 2064 -4362 550 227 70 0 chr15 20299738 20299910 -81080611 + L1MCa LINE L1 2008 2191 -4235 5653 116 3 15 chr15 20299943 20300788 -81079733 - L1PA14 LINE L1 -2 6159 5339 2104 128 0 0 chr15 20300788 20301085 -81079436 - AluY SINE Alu -12 299 3 5653 116 3 15 chr15 20301085 20301868 -81078653 - L1PA14 LINE L1 -822 5339 4549 495 246 116 30 chr15 20301966 20302198 -81078323 - MLT1E LTR MaLR -341 252 1 599 250 0 0 chr15 20302202 20302346 -81078175 - L1MD3 LINE L1 -282 7713 7570 282 29 0 0 chr15 20302569 20302604 -81077917 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2001 118 34 3 chr15 20302626 20302922 -81077599 + AluSx SINE Alu 1 305 -7 1665 232 101 15 chr15 20302942 20303537 -81076984 - L1MC3 LINE L1 -28 7757 7112 2413 172 45 4 chr15 20303560 20303907 -81076614 - L1PB3 LINE L1 -7 6147 5775 321 26 0 0 chr15 20303907 20303945 -81076576 + (CA)n Simple_repeat Simple_repeat 2 39 0 2413 172 45 4 chr15 20303945 20304062 -81076459 - L1PB3 LINE L1 -379 5775 5664 360 0 0 0 chr15 20304062 20304102 -81076419 + (TG)n Simple_repeat Simple_repeat 1 40 0 342 0 0 0 chr15 20304101 20304139 -81076382 + (GA)n Simple_repeat Simple_repeat 1 38 0 * 1592 179 18 0 chr15 20304139 20304412 -81076109 - AluSx SINE Alu -34 278 1 4021 125 1 19 chr15 20304419 20305067 -81075454 + LTR8 LTR ERV1 55 691 0 1068 233 51 86 chr15 20305569 20305755 -81074766 - L1MC3 LINE L1 -472 7313 7122 2053 125 3 23 chr15 20305755 20306058 -81074463 + AluSx SINE Alu 1 297 -15 1068 233 51 86 chr15 20306058 20306404 -81074117 - L1MC3 LINE L1 -663 7122 6800 1754 258 32 5 chr15 20306533 20307098 -81073423 - L1MC3 LINE L1 -1352 6433 5854 1098 214 64 94 chr15 20307141 20307668 -81072853 - MER66A LTR ERV1 0 478 97 308 291 29 0 chr15 20307682 20307854 -81072667 - L1MC3 LINE L1 -748 5398 5222 3830 121 11 10 chr15 20307856 20308475 -81072046 - L1PA13 LINE L1 -6 6157 5538 2008 279 92 70 chr15 20308484 20310373 -81070148 - L1PA13 LINE L1 -707 5461 3528 320 191 36 12 chr15 20310468 20310552 -81069969 + MLT1E LTR MaLR 493 578 -15 786 212 48 8 chr15 20310566 20310816 -81069705 + L1MD3 LINE L1 7721 7980 -15 23 0 0 0 chr15 20310825 20310848 -81069673 + AT_rich Low_complexity Low_complexity 1 23 0 225 376 26 0 chr15 20312634 20312751 -81067770 + HsTC2 DNA Tc2 35 154 -1744 * 613 248 71 44 chr15 20312748 20313042 -81067479 + HsTC2 DNA Tc2 1233 1710 -188 2802 182 28 39 chr15 20313582 20313618 -81066903 - MSTA-int LTR MaLR -1010 641 606 2365 74 0 7 chr15 20313618 20313914 -81066607 - AluY SINE Alu -17 294 1 2802 182 28 39 chr15 20313914 20313989 -81066532 - MSTA-int LTR MaLR -1045 606 532 2253 136 0 0 chr15 20313989 20314299 -81066222 - AluSg SINE Alu 0 310 1 2802 182 28 39 chr15 20314299 20314834 -81065687 - MSTA-int LTR MaLR -1119 532 1 1938 163 129 5 chr15 20314834 20315215 -81065306 - MSTA LTR MaLR 0 428 1 2325 277 60 27 chr15 20315223 20316652 -81063869 - L1MC3 LINE L1 -1152 4994 3519 356 253 24 0 chr15 20316655 20316738 -81063783 + MLT1E LTR MaLR 350 434 -159 831 92 8 0 chr15 20317128 20317248 -81063273 - AluSg/x SINE Alu -15 295 175 294 328 35 0 chr15 20317309 20317425 -81063096 + HsTC2 DNA Tc2 35 154 -1744 693 225 65 33 chr15 20317462 20317769 -81062752 + HsTC2 DNA Tc2 1281 1773 -125 481 265 89 51 chr15 20317974 20318231 -81062290 - L1M4 LINE L1 -1127 5019 4753 1859 157 14 7 chr15 20318235 20318528 -81061993 - AluSx SINE Alu -17 295 1 1205 215 16 60 chr15 20318583 20318899 -81061622 - AluJo SINE Alu 0 302 1 22 0 0 0 chr15 20319025 20319047 -81061474 + AT_rich Low_complexity Low_complexity 1 22 0 1702 174 3 24 chr15 20319048 20319342 -81061179 - AluJb SINE Alu -24 288 1 29 28 0 0 chr15 20320511 20320547 -81059974 + AT_rich Low_complexity Low_complexity 1 36 0 780 188 71 67 chr15 20320550 20320805 -81059716 - MER4-int LTR ERV1 -127 6631 6376 595 216 57 18 chr15 20320774 20320951 -81059570 - MER4-int LTR ERV1 -593 6165 3950 * 1733 123 0 16 chr15 20321035 20321286 -81059235 + AluSc SINE Alu 45 291 -18 898 217 46 39 chr15 20321699 20322123 -81058398 - MER4-int LTR ERV1 -2138 4021 2474 739 168 41 38 chr15 20322206 20322483 -81058038 - MER4-int LTR ERV1 -2900 3698 2403 351 255 9 47 chr15 20322602 20322708 -81057813 + L1MC4 LINE L1 6614 6715 -1327 424 226 35 0 chr15 20323276 20323391 -81057130 + L1MCa LINE L1 2101 2219 -4207 423 282 153 16 chr15 20323391 20323639 -81056882 - MLT1E LTR MaLR -248 345 64 21 0 0 0 chr15 20323942 20323963 -81056558 + AT_rich Low_complexity Low_complexity 1 21 0 42 0 0 0 chr15 20324055 20324097 -81056424 + AT_rich Low_complexity Low_complexity 1 42 0 974 205 111 3 chr15 20324098 20324386 -81056135 - L1MC3 LINE L1 -19 7766 7448 580 221 15 60 chr15 20324392 20324522 -81055999 - L1MC3 LINE L1 -384 7401 7282 1704 182 3 23 chr15 20324522 20324829 -81055692 - AluJo SINE Alu -11 301 1 580 221 15 60 chr15 20324829 20324897 -81055624 - L1MC3 LINE L1 -503 7282 7212 6352 119 24 44 chr15 20324897 20326105 -81054416 - MER11C LTR ERVK 0 1071 1 329 315 23 8 chr15 20326106 20326236 -81054285 - L1MC3 LINE L1 -571 7214 7083 1089 281 64 53 chr15 20326254 20327416 -81053105 - L1M4 LINE L1 -1453 4693 3520 455 214 304 6 chr15 20327424 20327592 -81052929 + MLT1E LTR MaLR 376 593 0 730 240 24 12 chr15 20327600 20327850 -81052671 + L1MD3 LINE L1 7731 7983 -12 667 237 29 35 chr15 20328211 20328384 -81052137 + FAM SINE Alu 3 174 -1 2066 128 0 3 chr15 20328445 20328743 -81051778 - AluY SINE Alu -14 297 1 1734 247 36 25 chr15 20328869 20329392 -81051129 + MER54A LTR ERVL 1 529 -372 1622 259 38 30 chr15 20329476 20330006 -81050515 - MLT2B3 LTR ERVL -20 534 1 2512 206 14 26 chr15 20330006 20330423 -81050098 - ERVL-B3 LTR ERVL -7 5757 5337 186 118 0 0 chr15 20330423 20330457 -81050064 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2279 81 3 0 chr15 20330460 20330745 -81049776 - AluY SINE Alu -25 286 1 2512 206 14 26 chr15 20330745 20330948 -81049573 - ERVL-B3 LTR ERVL -429 5335 5140 1778 216 31 33 chr15 20330952 20331377 -81049144 - MSTC LTR MaLR -2 426 3 238 308 67 0 chr15 20331380 20331500 -81049021 - MSTC-int LTR MaLR -1 1734 1607 2360 232 19 52 chr15 20331563 20332253 -81048268 - LTR8 LTR ERV1 -9 682 16 1094 291 19 6 chr15 20332286 20332602 -81047919 - HUERS-P1 LTR ERV1 0 6263 5944 865 210 179 14 chr15 20332681 20332971 -81047550 - PRIMA41-int LTR ERV1 -57 6274 5937 9334 179 40 89 chr15 20333142 20334120 -81046401 - PRIMA41-int LTR ERV1 -524 5422 4398 207 0 0 0 chr15 20334120 20334143 -81046378 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 9334 179 40 89 chr15 20334143 20334299 -81046222 - PRIMA41-int LTR ERV1 -1548 4398 4236 1595 202 11 11 chr15 20334299 20334586 -81045935 - AluJo SINE Alu -23 289 3 9334 179 40 89 chr15 20334586 20336470 -81044051 - PRIMA41-int LTR ERV1 -1710 4236 1816 1000 261 77 54 chr15 20336530 20337012 -81043509 - PRIMA41-int LTR ERV1 -4114 3423 2931 2543 223 33 27 chr15 20337027 20337881 -81042640 - PRIMA41-int LTR ERV1 -2594 2286 1280 946 211 150 85 chr15 20337881 20338222 -81042299 - LTR8 LTR ERV1 -364 363 1 838 297 55 72 chr15 20338222 20338752 -81041769 - MSTC-int LTR MaLR -221 1430 923 376 179 0 0 chr15 20338766 20338850 -81041671 + MSTC LTR MaLR 345 428 0 428 231 10 128 chr15 20338850 20339053 -81041468 + MSTC-int LTR MaLR 1 179 -1472 3110 215 13 7 chr15 20339055 20339753 -81040768 - ERVL-B3 LTR ERVL -1001 4763 4062 484 292 26 17 chr15 20339764 20339945 -81040576 - PRIMA41-int LTR ERV1 -1990 5766 5581 1933 116 0 77 chr15 20339945 20340272 -81040249 + AluSg SINE Alu 1 302 -8 484 292 26 17 chr15 20340272 20340323 -81040198 - PRIMA41-int LTR ERV1 -2175 5581 5532 9670 232 62 8 chr15 20340845 20343395 -81037126 - ERVL-B3 LTR ERVL -2904 2860 172 1892 219 46 48 chr15 20343558 20343968 -81036553 - MLT2B3 LTR ERVL -8 546 136 4185 176 22 7 chr15 20343968 20344739 -81035782 - LTR39 LTR ERV1 0 783 1 1892 219 46 48 chr15 20344739 20344875 -81035646 - MLT2B3 LTR ERVL -418 136 1 1259 236 50 11 chr15 20344875 20345235 -81035286 + MER54A LTR ERVL 523 896 -5 450 254 102 44 chr15 20345717 20345952 -81034569 + HsTC2 DNA Tc2 1507 1770 -128 4775 56 0 0 chr15 20345952 20346543 -81033978 + LTR10C LTR ERV1 1 591 0 450 254 102 44 chr15 20346543 20346649 -81033872 + HsTC2 DNA Tc2 1770 1868 -30 501 222 102 6 chr15 20346732 20346908 -81033613 - MER4C LTR ERV1 0 465 273 409 225 48 11 chr15 20346968 20347185 -81033336 - MER4A LTR ERV1 -203 262 6 7356 189 52 59 chr15 20347186 20349319 -81031202 - MER4A-int LTR ERV1 -8 6590 2831 1625 201 3 16 chr15 20349319 20349622 -81030899 + AluJb SINE Alu 1 299 -13 7356 189 52 59 chr15 20349622 20350129 -81030392 - MER4A-int LTR ERV1 -3767 2831 2322 1513 230 0 3 chr15 20350169 20350460 -81030061 - AluJo SINE Alu -22 290 1 1605 186 48 81 chr15 20350510 20351015 -81029506 - MER4C-int LTR ERV1 -1952 2928 2441 415 137 14 0 chr15 20351019 20351092 -81029429 - L1PA15 LINE L1 -18 6147 6074 363 184 122 10 chr15 20351223 20351321 -81029200 - MER4C-int LTR ERV1 -5232 1099 991 304 51 0 0 chr15 20351333 20351372 -81029149 - MER4C-int LTR ERV1 -4795 1151 1113 441 209 23 16 chr15 20351558 20351687 -81028834 - MER4C-int LTR ERV1 -6356 242 113 714 213 25 35 chr15 20351782 20352264 -81028257 - MER4C LTR ERV1 0 695 3 343 324 75 42 chr15 20352489 20352688 -81027833 - L1M4 LINE L1 -1050 5096 4882 2435 84 3 0 chr15 20352688 20352997 -81027524 + AluY SINE Alu 1 310 -1 343 324 75 42 chr15 20352997 20353103 -81027418 - L1M4 LINE L1 -1264 4882 4781 1743 118 95 0 chr15 20353106 20353258 -81027263 - AluSx SINE Alu -24 288 152 189 0 0 0 chr15 20353258 20353279 -81027242 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1743 118 95 0 chr15 20353279 20353389 -81027132 - AluSx SINE Alu -160 152 1 463 193 42 8 chr15 20353590 20353709 -81026812 + LTR47A LTR ERVL 1 123 -329 341 250 12 0 chr15 20353759 20353843 -81026678 + LTR47B LTR ERVL 359 443 0 310 234 0 0 chr15 20354773 20354850 -81025671 + LTR57-int LTR ERVL 1248 1324 -4723 390 326 34 8 chr15 20355473 20355730 -81024791 + LTR57-int LTR ERVL 1852 2086 -1332 521 361 22 26 chr15 20355828 20356077 -81024444 + LTR57-int LTR ERVL 2312 2561 -2782 1839 162 3 10 chr15 20356077 20356374 -81024147 + AluSq SINE Alu 1 295 -18 521 361 22 26 chr15 20356374 20356817 -81023704 + LTR57-int LTR ERVL 2561 3001 -2342 892 266 47 6 chr15 20357026 20357620 -81022901 - L1MCa LINE L1 -3595 2831 2213 1029 146 22 95 chr15 20357626 20357941 -81022580 + L1MCa LINE L1 1925 2216 -4210 410 282 124 71 chr15 20357949 20358272 -81022249 - MLT1E LTR MaLR -253 340 1 659 223 0 0 chr15 20358277 20358425 -81022096 - L1MD3 LINE L1 -283 7712 7565 28 29 0 0 chr15 20358431 20358466 -81022055 + AT_rich Low_complexity Low_complexity 1 35 0 4200 253 68 45 chr15 20358672 20359485 -81021036 - L1MC3 LINE L1 -6 7779 6986 2227 125 0 0 chr15 20359485 20359796 -81020725 - AluY SINE Alu 0 311 1 4200 253 68 45 chr15 20359796 20360577 -81019944 - L1MC3 LINE L1 -799 6986 6134 1814 157 3 26 chr15 20360577 20360889 -81019632 - AluSx SINE Alu -7 305 1 4200 253 68 45 chr15 20360889 20361167 -81019354 - L1MC3 LINE L1 -1651 6134 5864 559 251 36 5 chr15 20361177 20361510 -81019011 - L1MC3 LINE L1 -720 5454 5113 231 213 32 32 chr15 20361507 20361601 -81018920 - L1MC3 LINE L1 -987 5159 5066 * 2299 126 55 2 chr15 20361601 20361999 -81018522 - MSTA LTR MaLR 0 428 10 413 286 82 5 chr15 20362048 20362268 -81018253 - L1MC3 LINE L1 -1121 5025 4789 7069 96 4 19 chr15 20362310 20363383 -81017138 - MER11C LTR ERVK -14 1057 1 6217 201 31 54 chr15 20363395 20366098 -81014423 - L1MA1 LINE L1 -17 6285 3654 1437 198 3 75 chr15 20367056 20367375 -81013146 - AluJo SINE Alu -6 296 1 467 258 258 5 chr15 20367379 20367577 -81012944 + MLT1E LTR MaLR 346 593 0 800 214 30 17 chr15 20367604 20367838 -81012683 + L1MD3 LINE L1 7745 7981 -14 23 0 0 0 chr15 20367844 20367867 -81012654 + AT_rich Low_complexity Low_complexity 1 23 0 766 208 0 0 chr15 20367871 20368015 -81012506 + FRAM SINE Alu 13 156 -20 28 48 0 0 chr15 20368362 20368404 -81012117 + AT_rich Low_complexity Low_complexity 1 42 0 285 29 0 0 chr15 20368602 20368636 -81011885 + (TA)n Simple_repeat Simple_repeat 2 35 0 1543 202 0 4 chr15 20368770 20369047 -81011474 + AluJb SINE Alu 1 276 -36 316 198 12 12 chr15 20369047 20369133 -81011388 + GA-rich Low_complexity Low_complexity 3 88 0 272 301 0 0 chr15 20369929 20370012 -81010509 - MER66A-int LTR ERV1 -6387 735 653 273 333 0 0 chr15 20370733 20370823 -81009698 - MER66A-int LTR ERV1 -971 815 726 774 329 25 33 chr15 20371104 20371499 -81009022 - MER66A-int LTR ERV1 -1342 444 53 1544 81 8 8 chr15 20371520 20371756 -81008765 - L1PA12 LINE L1 -191 5977 5742 850 225 89 52 chr15 20371760 20372084 -81008437 - MER66A LTR ERV1 -46 432 97 3069 275 61 28 chr15 20372244 20374025 -81006496 - L1M4 LINE L1 -744 5402 3564 330 190 52 16 chr15 20374066 20374248 -81006273 + MLT1E LTR MaLR 350 593 0 681 230 34 19 chr15 20374250 20374515 -81006006 + L1MD3 LINE L1 7724 7992 -3 306 325 26 0 chr15 20376631 20376748 -81003773 + HsTC2 DNA Tc2 35 154 -1744 * 688 286 29 58 chr15 20376743 20377226 -81003295 + HsTC2 DNA Tc2 1231 1875 -23 348 353 31 9 chr15 20377496 20377720 -81002801 - L1M4 LINE L1 -1034 5112 4884 1318 240 0 13 chr15 20377854 20378158 -81002363 - AluJo SINE Alu -12 300 1 2848 7 0 0 chr15 20378610 20378918 -81001603 + AluY SINE Alu 1 308 -3 259 78 0 4 chr15 20380199 20380418 -81000103 + AluSx SINE Alu 1 300 0 * 284 301 65 63 chr15 20380415 20380904 -80999617 - LTR38 LTR ERV1 -66 490 1 22 35 0 0 chr15 20381172 20381201 -80999320 + AT_rich Low_complexity Low_complexity 1 29 0 312 27 0 0 chr15 20381312 20381349 -80999172 + (TG)n Simple_repeat Simple_repeat 2 38 0 2679 211 88 21 chr15 20381585 20382292 -80998229 - MER49 LTR ERV1 -169 754 1 1134 208 22 45 chr15 20382293 20382667 -80997854 - MER49-int LTR ERV1 -3 7093 6376 624 212 57 18 chr15 20382636 20382813 -80997708 - MER49-int LTR ERV1 -593 6165 3950 * 1682 106 16 8 chr15 20382897 20383142 -80997379 + AluSc SINE Alu 45 291 -18 261 174 0 151 chr15 20383374 20383460 -80997061 - MER49-int LTR ERV1 -4262 3858 3786 977 207 34 37 chr15 20383547 20383979 -80996542 - LTR49-int LTR ERV1 -2147 4184 3731 756 205 43 75 chr15 20384059 20384474 -80996047 - LTR49-int LTR ERV1 -2900 3698 3297 1662 280 4 6 chr15 20384478 20384957 -80995564 - ERVL LTR ERVL -3961 1803 1326 1001 187 6 11 chr15 20384961 20385143 -80995378 - AluSp SINE Alu -18 295 115 1844 15 0 0 chr15 20385243 20385444 -80995077 - AluYa5 SINE Alu -3 308 108 2611 29 0 0 chr15 20385444 20385787 -80994734 - L1P LINE L1 -781 5365 5023 5258 124 2 17 chr15 20385935 20386773 -80993748 - L1PA14 LINE L1 -2 6159 5333 2116 112 7 0 chr15 20386773 20387067 -80993454 - AluY SINE Alu -13 298 3 5258 124 2 17 chr15 20387067 20387123 -80993398 - L1PA14 LINE L1 -828 5333 5278 2439 181 18 13 chr15 20387229 20388135 -80992386 - L1P5 LINE L1 -479 5675 4767 478 313 79 58 chr15 20388146 20389325 -80991196 - L1PA15-16 LINE L1 -5685 1178 3 532 243 100 21 chr15 20389343 20389582 -80990939 - L1MC3 LINE L1 -659 7126 6869 1675 261 89 57 chr15 20389597 20389958 -80990563 - L1MC3 LINE L1 -831 7023 6675 342 80 0 0 chr15 20389958 20390008 -80990513 + (CA)n Simple_repeat Simple_repeat 1 50 0 1675 261 89 57 chr15 20390008 20390713 -80989808 - L1MC3 LINE L1 -1179 6675 5923 1053 269 53 19 chr15 20390713 20391376 -80989145 - L1MC3 LINE L1 -720 5523 4846 1171 256 35 31 chr15 20391391 20391903 -80988618 - L1MC3 LINE L1 -2105 4110 3597 299 309 10 0 chr15 20391910 20392007 -80988514 + MLT1E LTR MaLR 345 442 -151 416 255 148 16 chr15 20392089 20392332 -80988189 + L1MD3 LINE L1 7721 7995 0 387 316 85 9 chr15 20393661 20393873 -80986648 - L1MC3 LINE L1 -6077 319 92 412 284 21 0 chr15 20393983 20394124 -80986397 - L1MD3 LINE L1 -281 7714 7571 1129 150 0 0 chr15 20394224 20394384 -80986137 + AluSx SINE Alu 1 160 -152 1057 278 62 4 chr15 20394389 20394856 -80985665 - L1M4 LINE L1 -872 5274 4781 * 1161 245 86 11 chr15 20394854 20395331 -80985190 - L1M4 LINE L1 -2115 4031 3519 343 238 12 0 chr15 20395332 20395412 -80985109 + MLT1E LTR MaLR 349 429 -164 993 195 53 0 chr15 20395502 20395748 -80984773 + L1MD3 LINE L1 7724 7982 -13 2253 140 28 6 chr15 20396366 20396722 -80983799 - THE1B LTR MaLR 0 364 1 1598 221 6 3 chr15 20398539 20398878 -80981643 + MER54A LTR ERVL 24 363 -538 673 196 14 0 chr15 20398933 20399076 -80981445 - L1MD3 LINE L1 -282 7713 7569 2530 218 83 31 chr15 20399302 20399912 -80980609 - L1MC3 LINE L1 -4 7781 7111 2041 127 3 23 chr15 20399912 20400212 -80980309 + AluSx SINE Alu 1 294 -18 2530 218 83 31 chr15 20400212 20400470 -80980051 - L1MC3 LINE L1 -674 7111 6868 1700 264 32 5 chr15 20400755 20401320 -80979201 - L1MC3 LINE L1 -1352 6433 5854 1040 213 66 99 chr15 20401363 20401890 -80978631 - MER66A LTR ERV1 0 478 97 286 254 28 28 chr15 20401904 20402081 -80978440 - L1MC3 LINE L1 -748 5398 5222 1025 120 23 11 chr15 20402083 20402258 -80978263 - L1PA13 LINE L1 -6 6157 5981 2976 268 70 19 chr15 20402258 20403798 -80976723 - L1MC3 LINE L1 -994 5152 3535 351 202 30 10 chr15 20403900 20403999 -80976522 + MLT1E LTR MaLR 493 593 0 700 186 54 58 chr15 20404001 20404074 -80976447 + L1MD3 LINE L1 7724 7796 -199 2128 102 0 3 chr15 20404074 20404381 -80976140 + AluY SINE Alu 1 306 0 700 186 54 58 chr15 20404381 20404564 -80975957 + L1MD3 LINE L1 7796 7980 -15 23 0 0 0 chr15 20404573 20404596 -80975925 + AT_rich Low_complexity Low_complexity 1 23 0 299 350 26 0 chr15 20406387 20406504 -80974017 + HsTC2 DNA Tc2 35 154 -1744 * 595 241 85 58 chr15 20406501 20406795 -80973726 + HsTC2 DNA Tc2 1233 1710 -188 467 241 100 69 chr15 20407284 20407574 -80972947 - L1M4 LINE L1 -1095 5051 4753 1911 137 14 7 chr15 20407587 20407872 -80972649 - AluSx SINE Alu -20 292 6 1129 244 3 48 chr15 20407933 20408249 -80972272 - AluJo SINE Alu 0 302 1 24 0 0 0 chr15 20408372 20408396 -80972125 + AT_rich Low_complexity Low_complexity 1 24 0 1757 162 3 30 chr15 20408397 20408693 -80971828 - AluJb SINE Alu -24 288 1 1349 72 11 0 chr15 20409474 20409654 -80970867 + AluY SINE Alu 117 298 -13 1387 94 0 0 chr15 20410496 20410676 -80969845 + AluSx SINE Alu 1 180 -132 307 292 63 63 chr15 20410703 20411193 -80969328 - LTR38 LTR ERV1 -66 490 1 252 59 0 0 chr15 20411603 20411637 -80968884 + (TG)n Simple_repeat Simple_repeat 2 35 0 332 345 0 0 chr15 20411713 20411829 -80968692 - LOR1-int LTR ERV1 -378 6744 6629 1702 203 32 23 chr15 20411874 20412583 -80967938 - MER49 LTR ERV1 -169 754 1 1378 203 19 11 chr15 20412584 20412949 -80967572 - MER49-int LTR ERV1 -3 7096 6376 611 202 101 18 chr15 20412918 20413086 -80967435 - MER49-int LTR ERV1 -593 6165 5984 * 1786 105 4 8 chr15 20413178 20413426 -80967095 + AluSc SINE Alu 45 291 -18 21 0 0 0 chr15 20413462 20413483 -80967038 + AT_rich Low_complexity Low_complexity 1 21 0 858 222 26 27 chr15 20413689 20414107 -80966414 - LOR1-int LTR ERV1 -2148 4183 3731 1104 182 59 97 chr15 20414145 20414690 -80965831 - LOR1-int LTR ERV1 -2869 3729 3206 745 145 0 16 chr15 20414735 20414919 -80965602 - LOR1-int LTR ERV1 -3378 3220 1814 3296 264 45 20 chr15 20415026 20415227 -80965294 - ERVL-B3 LTR ERVL -4441 1252 1058 826 219 0 18 chr15 20415227 20415396 -80965125 - FRAM SINE Alu 0 166 1 3296 264 45 20 chr15 20415396 20416397 -80964124 - ERVL-B3 LTR ERVL -4635 1058 1 698 236 13 52 chr15 20416397 20416459 -80964062 - MLT2B3 LTR ERVL 0 554 491 315 0 0 0 chr15 20416459 20416494 -80964027 + (TAGA)n Simple_repeat Simple_repeat 1 35 0 698 236 13 52 chr15 20416494 20416660 -80963861 - MLT2B3 LTR ERVL -63 491 335 1539 249 123 40 chr15 20416740 20417681 -80962840 - L1MC3 LINE L1 -913 7152 6134 2575 271 70 24 chr15 20417682 20418088 -80962433 - L1MC3 LINE L1 -725 5733 5347 1569 188 169 5 chr15 20418088 20418456 -80962065 - MSTA LTR MaLR 0 428 1 8038 191 18 22 chr15 20418458 20419496 -80961025 - MSTA-int LTR MaLR -2 1649 608 183 42 0 0 chr15 20419496 20419520 -80961001 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2081 98 0 7 chr15 20419530 20419806 -80960715 - AluY SINE Alu -37 274 1 8038 191 18 22 chr15 20419806 20419873 -80960648 - MSTA-int LTR MaLR -1052 599 533 2283 118 3 0 chr15 20419873 20420177 -80960344 - AluSg SINE Alu 0 310 6 8038 191 18 22 chr15 20420177 20420716 -80959805 - MSTA-int LTR MaLR -1118 533 1 1864 144 155 11 chr15 20420716 20421090 -80959431 - MSTA LTR MaLR 0 428 1 2575 271 70 24 chr15 20421090 20422532 -80957989 - L1MC3 LINE L1 -1110 5348 3799 519 212 264 5 chr15 20422536 20422729 -80957792 + MLT1E LTR MaLR 351 593 0 722 233 29 10 chr15 20422735 20422941 -80957580 + L1MD3 LINE L1 7729 7938 -57 26 0 0 0 chr15 20422941 20422967 -80957554 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr15 20422995 20423019 -80957502 + AT_rich Low_complexity Low_complexity 1 24 0 1923 248 38 25 chr15 20425190 20426358 -80954163 - L1MC3 LINE L1 -3015 3411 2227 242 215 37 52 chr15 20426353 20426488 -80954033 + L1MCa LINE L1 1936 2068 -4358 * 542 220 45 11 chr15 20426480 20426657 -80953864 + L1MCa LINE L1 2008 2190 -4236 26 30 0 0 chr15 20426657 20426690 -80953831 + AT_rich Low_complexity Low_complexity 1 33 0 5400 116 5 16 chr15 20426694 20427531 -80952990 - L1PA14 LINE L1 -3 6158 5339 2083 100 3 7 chr15 20427531 20427821 -80952700 - AluSc SINE Alu -19 290 2 5400 116 5 16 chr15 20427821 20428605 -80951916 - L1PA14 LINE L1 -822 5339 4547 549 236 88 32 chr15 20428713 20428929 -80951592 - MLT1E LTR MaLR -365 228 1 618 210 3 0 chr15 20428934 20429077 -80951444 - L1MD3 LINE L1 -299 7696 7488 1893 146 36 3 chr15 20429349 20429651 -80950870 + AluSx SINE Alu 1 312 0 1753 240 102 7 chr15 20429668 20430255 -80950266 - L1MC3 LINE L1 -31 7754 7112 2084 153 57 5 chr15 20430278 20430624 -80949897 - L1PB3 LINE L1 -7 6147 5778 393 22 0 0 chr15 20430624 20430670 -80949851 + (CA)n Simple_repeat Simple_repeat 2 47 0 2084 153 57 5 chr15 20430670 20430709 -80949812 - L1PB3 LINE L1 -376 5778 5742 560 208 71 0 chr15 20431804 20431972 -80948549 - L1MA7 LINE L1 -6 6285 6106 1925 269 39 11 chr15 20432215 20433370 -80947151 - L1MCa LINE L1 -3016 3410 2222 312 221 47 55 chr15 20433375 20433502 -80947019 + L1MCa LINE L1 1936 2061 -4365 496 207 120 0 chr15 20433504 20433654 -80946867 + L1MCa LINE L1 2007 2174 -4252 24 32 0 0 chr15 20433669 20433700 -80946821 + AT_rich Low_complexity Low_complexity 1 31 0 7272 38 11 0 chr15 20433700 20434909 -80945612 - L1PA3 LINE L1 -5 6150 4936 276 29 0 0 chr15 20434909 20434944 -80945577 + L1P LINE L1 4368 4402 -1744 7449 163 48 9 chr15 20434944 20437157 -80943364 - MER50-int LTR ERV1 -804 4076 3039 555 223 8 8 chr15 20437157 20437278 -80943243 - MER50-int LTR ERV1 -4296 2909 2789 * 7658 162 93 22 chr15 20437272 20438967 -80941554 - MER50-int LTR ERV1 -436 4781 4 1481 193 21 59 chr15 20438976 20439364 -80941157 - MER50 LTR ERV1 -10 724 352 649 207 37 24 chr15 20439446 20439610 -80940911 - MER50 LTR ERV1 -568 166 1 6681 261 36 26 chr15 20439610 20441679 -80938842 - ERVL-B2 LTR ERVL -3502 2262 172 2379 92 3 0 chr15 20441717 20442020 -80938501 + AluSx SINE Alu 1 304 -8 500 251 33 47 chr15 20442142 20442353 -80938168 - MLT2B2 LTR ERVL 0 515 308 710 292 32 83 chr15 20442452 20442595 -80937926 - L1MC3 LINE L1 -922 6863 6714 2047 155 0 0 chr15 20442595 20442892 -80937629 + AluSx SINE Alu 1 297 -15 710 292 32 83 chr15 20442892 20443183 -80937338 - L1MC3 LINE L1 -1071 6714 6451 4160 163 20 4 chr15 20443201 20443901 -80936620 - MER50 LTR ERV1 -23 711 1 2138 134 15 149 chr15 20443917 20444453 -80936068 - Tigger4(Zombi) DNA MER2_type 0 2731 2268 4761 167 138 15 chr15 20444454 20444604 -80935917 + Tigger3b DNA MER2_type 2 132 -2896 2093 210 59 11 chr15 20444604 20445042 -80935479 + LOR1b LTR ERV1 1 459 -2 4761 167 138 15 chr15 20445042 20445986 -80934535 + Tigger3b DNA MER2_type 132 1231 0 955 181 17 6 chr15 20445999 20446176 -80934345 - Tigger4(Zombi) DNA MER2_type -489 2242 2064 1278 231 79 36 chr15 20446213 20446681 -80933840 - L1MC3 LINE L1 -1375 6410 5923 1048 132 0 0 chr15 20446800 20446944 -80933577 - AluSg/x SINE Alu -16 296 153 1025 260 70 28 chr15 20446944 20447556 -80932965 - L1MC3 LINE L1 -748 5398 4783 3756 146 172 110 chr15 20447634 20449029 -80931492 - pTR5 LTR ERV1 -133 2021 36 279 303 92 7 chr15 20449372 20449514 -80931007 + HsTC2 DNA Tc2 1 154 -1744 * 296 287 157 28 chr15 20449511 20449727 -80930794 + HsTC2 DNA Tc2 1233 1652 -246 1962 141 10 16 chr15 20449793 20450105 -80930416 - AluSg SINE Alu 0 310 1 183 315 41 14 chr15 20450266 20450339 -80930182 - MIR SINE MIR -48 214 140 265 253 84 45 chr15 20450489 20450691 -80929830 - L1M4 LINE L1 -1054 5092 4883 576 179 0 0 chr15 20450857 20450969 -80929552 + CT-rich Low_complexity Low_complexity 3 114 0 1583 221 0 3 chr15 20450971 20451265 -80929256 - AluJb SINE Alu -19 293 1 2521 265 78 81 chr15 20451451 20452670 -80927851 - MSTC-int LTR MaLR -434 1217 3 1636 236 30 10 chr15 20452685 20453091 -80927430 - MSTC LTR MaLR -14 414 1 3411 254 21 8 chr15 20453101 20453945 -80926576 - ERVL-B3 LTR ERVL -637 5127 4273 * 5895 210 34 3 chr15 20453941 20455099 -80925422 - ERVL-B3 LTR ERVL -1720 4044 2852 3963 230 40 1 chr15 20455246 20456124 -80924397 - ERVL-B3 LTR ERVL -2915 2849 1938 2083 211 27 52 chr15 20456297 20457103 -80923418 - LTR27 LTR ERV1 -140 496 3 2436 278 5 5 chr15 20457103 20457719 -80922802 - ERVL-B3 LTR ERVL -3823 1941 1326 1271 184 0 5 chr15 20457723 20457946 -80922575 - AluSq SINE Alu -10 303 82 976 55 0 24 chr15 20457993 20458120 -80922401 - L1PA4 LINE L1 0 6155 6032 619 176 0 0 chr15 20458124 20458215 -80922306 - AluSq SINE Alu -221 91 1 4137 265 79 18 chr15 20458215 20458492 -80922029 - ERVL-B3 LTR ERVL -4433 1331 1072 900 200 0 51 chr15 20458492 20458667 -80921854 - FRAM SINE Alu 0 166 1 4137 265 79 18 chr15 20458667 20459643 -80920878 - ERVL-B3 LTR ERVL -4692 1072 2 666 258 13 64 chr15 20459644 20459714 -80920807 - MLT2B3 LTR ERVL 0 554 482 456 19 0 0 chr15 20459714 20459767 -80920754 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 666 258 13 64 chr15 20459767 20459929 -80920592 - MLT2B3 LTR ERVL -72 482 334 1826 253 126 42 chr15 20460008 20460942 -80919579 - L1MC3 LINE L1 -913 6872 5860 682 252 55 10 chr15 20460942 20461304 -80919217 - L1MC3 LINE L1 -720 5458 5079 1882 169 169 5 chr15 20461355 20461723 -80918798 - MSTA LTR MaLR 0 428 1 9017 193 18 10 chr15 20461725 20462766 -80917755 - MSTA-int LTR MaLR -2 1649 618 2405 70 0 7 chr15 20462766 20463067 -80917454 - AluY SINE Alu -12 299 1 9017 193 18 10 chr15 20463067 20463127 -80917394 - MSTA-int LTR MaLR -1033 618 560 2361 112 0 0 chr15 20463127 20463430 -80917091 - AluSg SINE Alu -7 303 1 9017 193 18 10 chr15 20463430 20463962 -80916559 - MSTA-int LTR MaLR -1091 560 1 2154 170 123 5 chr15 20463962 20464345 -80916176 - MSTA LTR MaLR 0 428 1 808 267 27 52 chr15 20464451 20464781 -80915740 - L1MC3 LINE L1 -2306 3840 3519 618 238 264 5 chr15 20464785 20464978 -80915543 + MLT1E LTR MaLR 351 593 0 977 219 29 8 chr15 20464984 20465230 -80915291 + L1MD3 LINE L1 7729 7979 -16 884 65 16 0 chr15 20467739 20467862 -80912659 - AluSp/q SINE Alu -12 301 177 262 342 44 0 chr15 20467924 20468038 -80912483 + HsTC2 DNA Tc2 36 154 -1744 807 238 65 23 chr15 20468075 20468447 -80912074 + HsTC2 DNA Tc2 1281 1848 -50 435 345 98 9 chr15 20468702 20469050 -80911471 - L1M4 LINE L1 -1013 5133 4755 28 71 0 0 chr15 20470112 20470168 -80910353 + AT_rich Low_complexity Low_complexity 1 56 0 606 138 0 0 chr15 20471294 20471388 -80909133 - L1P5 LINE L1 -397 5757 5664 378 0 0 0 chr15 20471388 20471430 -80909091 + (TG)n Simple_repeat Simple_repeat 1 42 0 285 129 6 0 chr15 20471446 20471494 -80909027 - Alu SINE Alu -20 282 242 1161 277 73 38 chr15 20471531 20472343 -80908178 - L1M4 LINE L1 -1659 4487 3648 1365 195 6 114 chr15 20473293 20473626 -80906895 - AluJo SINE Alu -5 297 1 584 219 265 15 chr15 20473632 20473828 -80906693 + MLT1E LTR MaLR 349 593 0 930 205 29 20 chr15 20473855 20474099 -80906422 + L1MD3 LINE L1 7745 7990 -5 791 217 0 0 chr15 20474121 20474264 -80906257 + FRAM SINE Alu 13 155 -21 31 26 0 0 chr15 20474611 20474649 -80905872 + AT_rich Low_complexity Low_complexity 1 38 0 308 194 28 14 chr15 20474890 20474962 -80905559 + L1MCa LINE L1 1996 2068 -4358 195 184 0 0 chr15 20474964 20475002 -80905519 + (TATG)n Simple_repeat Simple_repeat 1 38 0 1466 192 0 38 chr15 20475135 20475422 -80905099 + AluJb SINE Alu 1 276 -36 277 205 13 13 chr15 20475422 20475500 -80905021 + GA-rich Low_complexity Low_complexity 3 80 0 617 213 8 0 chr15 20476770 20476892 -80903629 - LTR47A LTR ERVL -3 449 327 1770 305 58 45 chr15 20477048 20478202 -80902319 - PABL_B-int LTR ERV1 -251 7505 6337 2262 316 47 44 chr15 20478811 20480546 -80899975 - PABL_B-int LTR ERV1 -2913 4209 2511 29 0 0 0 chr15 20532656 20532685 -80847836 + AT_rich Low_complexity Low_complexity 1 29 0 1017 136 81 10 chr15 20532981 20533179 -80847342 - MER101 LTR ERV1 -1 473 262 1710 148 93 0 chr15 20533186 20533308 -80847213 + AluSx SINE Alu 9 118 -194 216 0 0 0 chr15 20533308 20533332 -80847189 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1710 148 93 0 chr15 20533332 20533487 -80847034 + AluSx SINE Alu 118 312 0 719 158 0 0 chr15 20533525 20533645 -80846876 - MER101 LTR ERV1 -354 120 1 300 365 33 39 chr15 20533748 20533929 -80846592 - HAL1 LINE L1 -2326 181 2 653 208 48 24 chr15 20534701 20534908 -80845613 - AluSg/x SINE Alu -11 298 87 4180 203 22 18 chr15 20535023 20535059 -80845462 - L1MB2 LINE L1 -14 6393 6359 771 227 7 7 chr15 20535059 20535209 -80845312 - FRAM SINE Alu -16 150 1 4180 203 22 18 chr15 20535209 20535552 -80844969 - L1MB2 LINE L1 -48 6359 6019 1114 186 53 9 chr15 20535552 20535778 -80844743 + MER46A DNA MER2_type 1 236 0 4180 203 22 18 chr15 20535778 20536917 -80843604 - L1MB2 LINE L1 -388 6019 4874 2047 185 67 85 chr15 20536935 20537478 -80843043 + MER67B LTR ERV1 1 486 -175 2810 176 75 52 chr15 20537478 20538189 -80842332 - LTR8A LTR ERV1 0 727 1 2047 185 67 85 chr15 20538189 20538221 -80842300 + MER67B LTR ERV1 486 517 -144 5568 132 31 13 chr15 20539299 20540763 -80839758 - L1P LINE L1 -1277 4869 3183 1698 213 35 25 chr15 20540863 20541374 -80839147 - L1MB2 LINE L1 -4696 1688 1173 554 269 88 35 chr15 20541370 20541473 -80839048 - L1MB2 LINE L1 -5499 885 789 * 2240 102 6 13 chr15 20541473 20541787 -80838734 + AluSx SINE Alu 1 312 0 554 269 88 35 chr15 20541787 20542025 -80838496 - L1MB2 LINE L1 -5595 789 526 309 316 35 18 chr15 20543399 20543513 -80837008 - MIR SINE MIR -73 135 20 247 286 0 13 chr15 20544491 20544568 -80835953 + MIR SINE MIR 128 203 -59 709 294 59 88 chr15 20544840 20545532 -80834989 - L2 LINE L2 -1 3312 2633 808 103 9 9 chr15 20545532 20545648 -80834873 + AluSg1 SINE Alu 1 116 -193 1962 123 10 10 chr15 20545856 20546175 -80834346 - AluSx SINE Alu 0 312 1 1969 150 7 3 chr15 20546179 20546473 -80834048 - AluSx SINE Alu -16 296 2 2294 119 44 0 chr15 20546542 20546885 -80833636 + Tigger3(Golem) DNA MER2_type 2604 2961 -68 2494 172 78 38 chr15 20546886 20547086 -80833435 + MER4B LTR ERV1 1 192 -418 1965 138 17 0 chr15 20547086 20547383 -80833138 + AluSx SINE Alu 4 305 -7 2494 172 78 38 chr15 20547383 20547734 -80832787 + MER4B LTR ERV1 192 574 -36 238 246 82 0 chr15 20547769 20547830 -80832691 + Tigger3(Golem) DNA MER2_type 2963 3028 -1 407 274 40 0 chr15 20548188 20548312 -80832209 + L1MEc LINE L1 111 239 -6157 1214 171 5 0 chr15 20548777 20548982 -80831539 + MER47A DNA MER2_type 3 208 -158 495 217 9 17 chr15 20549397 20549545 -80830976 + ALR/Alpha Satellite centromeric 1 146 -62 416 225 25 17 chr15 20549837 20549957 -80830564 - Tigger5 DNA MER2_type -22 2301 2181 3032 198 34 16 chr15 20550177 20550820 -80829701 + L1PA16 LINE L1 5493 6147 -19 313 113 38 0 chr15 20550822 20550875 -80829646 + L1PA16 LINE L1 6105 6159 -7 844 238 196 55 chr15 20550937 20551472 -80829049 + L1MC3 LINE L1 4614 5321 -853 2268 91 20 3 chr15 20551472 20551768 -80828753 - AluSq SINE Alu -11 302 2 844 238 196 55 chr15 20551768 20551925 -80828596 + L1MC3 LINE L1 5321 5454 -720 428 230 9 9 chr15 20551925 20552038 -80828483 + L1MC3 LINE L1 5854 5966 -2076 836 255 18 99 chr15 20552042 20552426 -80828095 + L1MC3 LINE L1 6646 6998 -787 261 57 0 0 chr15 20552482 20552517 -80828004 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 418 163 12 12 chr15 20552571 20552657 -80827864 + L1MC3 LINE L1 7497 7582 -203 7677 105 4 1 chr15 20552758 20553856 -80826665 - L1P LINE L1 -3261 2885 1785 4607 150 7 39 chr15 20553850 20555142 -80825379 + L1P3 LINE L1 853 2092 -4369 * 874 142 39 0 chr15 20555152 20555307 -80825214 - L1M2 LINE L1 -821 5479 5319 2005 122 32 131 chr15 20555407 20555962 -80824559 + L1MA2 LINE L1 5265 6304 0 3788 212 102 56 chr15 20555977 20557226 -80823295 + L1MC3 LINE L1 5858 7164 -621 1629 123 3 78 chr15 20557229 20557513 -80823008 - L1PA15 LINE L1 -2 6163 5901 1771 199 14 11 chr15 20557513 20557884 -80822637 + L1P LINE L1 4092 4463 -1683 8498 94 39 20 chr15 20557884 20559035 -80821486 + HSMAR1 DNA Mariner 1 1178 -109 2090 114 0 0 chr15 20559035 20559344 -80821177 + AluSx SINE Alu 1 309 0 8498 94 39 20 chr15 20559344 20559409 -80821112 + HSMAR1 DNA Mariner 1178 1240 -47 9293 207 29 37 chr15 20559510 20562664 -80817857 - L1P3 LINE L1 -3325 3136 5 1252 258 11 28 chr15 20562661 20563014 -80817507 - L1MC3 LINE L1 -931 6854 6508 * 1319 244 113 15 chr15 20563020 20563211 -80817310 - L1MC3 LINE L1 -1418 6367 6196 438 20 0 0 chr15 20563211 20563262 -80817259 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1319 244 113 15 chr15 20563262 20563538 -80816983 - L1MC3 LINE L1 -1589 6196 5854 2812 251 49 91 chr15 20563538 20564503 -80816018 - L1MC3 LINE L1 -730 5454 4450 1600 89 31 0 chr15 20564503 20564728 -80815793 - L1MA4A LINE L1 -6 6297 6066 2812 251 49 91 chr15 20564728 20565037 -80815484 - L1MC3 LINE L1 -1734 4450 4130 7372 60 14 0 chr15 20565037 20566404 -80814117 + L1PA7 LINE L1 4774 6152 -2 2812 251 49 91 chr15 20566404 20567076 -80813445 - L1MC3 LINE L1 -2054 4130 3638 666 179 50 7 chr15 20567176 20567316 -80813205 + LTR10C LTR ERV1 446 591 0 2247 114 0 0 chr15 20568739 20569038 -80811483 + AluSx SINE Alu 7 305 -7 2445 102 151 5 chr15 20569228 20569619 -80810902 - LTR7 LTR ERV1 -2 448 1 2410 96 48 13 chr15 20569619 20569996 -80810525 - HERVH LTR ERV1 0 7713 7324 1215 163 9 26 chr15 20569996 20570223 -80810298 - HERVH LTR ERV1 -1894 5819 5597 8075 126 1 1 chr15 20570224 20571389 -80809132 - HERVH LTR ERV1 -2567 5146 3994 1552 150 0 4 chr15 20571399 20571645 -80808876 - HERVH LTR ERV1 -3977 3736 3492 1005 120 7 0 chr15 20571635 20571785 -80808736 - HERVH LTR ERV1 -4423 3290 3140 * 14914 110 21 11 chr15 20571779 20574493 -80806028 - HERVH LTR ERV1 -4726 2987 1 2626 90 125 8 chr15 20574495 20574896 -80805625 - LTR7 LTR ERV1 -2 448 1 331 264 39 16 chr15 20575445 20575574 -80804947 - L1MEc LINE L1 -6153 243 112 4315 88 22 0 chr15 20575734 20576361 -80804160 - L1P LINE L1 -1063 5083 4443 5839 34 4 1 chr15 20576461 20577161 -80803360 - L1P LINE L1 -1566 4580 3879 2275 33 3 0 chr15 20577152 20578082 -80802439 + L1PA2 LINE L1 5089 6155 0 * 3356 34 5 0 chr15 20578093 20578477 -80802044 + L1PA4 LINE L1 5770 6155 0 336 292 70 70 chr15 20578722 20579006 -80801515 - HsTC2 DNA Tc2 -198 1700 1241 5138 103 5 1 chr15 20580162 20580824 -80799697 - MER4A LTR ERV1 0 664 1 2811 133 164 30 chr15 20580929 20581470 -80799051 - LTR18B LTR ERVL 0 614 1 2661 246 53 31 chr15 20581619 20582446 -80798075 - L1MDa LINE L1 -3138 3402 2547 2286 73 30 3 chr15 20582446 20582748 -80797773 - AluY SINE Alu -1 310 1 2661 246 53 31 chr15 20582748 20582975 -80797546 - L1MDa LINE L1 -3993 2547 2326 944 201 22 48 chr15 20582985 20583258 -80797263 + L1MCa LINE L1 1955 2220 -4206 983 268 104 19 chr15 20583258 20583575 -80796946 - MLT1E LTR MaLR -249 344 1 571 261 49 0 chr15 20583579 20583721 -80796800 - L1MD3 LINE L1 -282 7713 7565 532 163 0 10 chr15 20583965 20584063 -80796458 - L1MC3 LINE L1 -11 7774 7678 262 277 25 57 chr15 20584168 20584327 -80796194 - L1M4 LINE L1 -2391 3755 3602 3794 234 126 17 chr15 20584354 20585647 -80794874 - L1M4 LINE L1 -1112 5034 3601 382 190 83 33 chr15 20585732 20585833 -80794688 + MLT1E LTR MaLR 281 427 -166 904 199 99 5 chr15 20585891 20586102 -80794419 - MER34 LTR ERV1 -283 259 29 264 270 22 108 chr15 20586138 20586360 -80794161 - MER34-int LTR ERV1 -20 6311 6109 25 51 0 0 chr15 20586679 20586718 -80793803 + AT_rich Low_complexity Low_complexity 1 39 0 33 25 0 0 chr15 20586776 20586816 -80793705 + AT_rich Low_complexity Low_complexity 1 40 0 15285 88 11 2 chr15 20586816 20588953 -80791568 - L1P LINE L1 -818 5336 3177 465 348 103 11 chr15 20590408 20590759 -80789762 + L1M4 LINE L1 4755 5137 -1009 183 296 19 0 chr15 20590860 20590914 -80789607 + MIR SINE MIR 137 191 -71 863 269 83 28 chr15 20591011 20591446 -80789075 - HsTC2 DNA Tc2 -22 1876 1242 2414 73 0 25 chr15 20591446 20591761 -80788760 - AluY SINE Alu -4 307 1 251 354 35 0 chr15 20591777 20591890 -80788631 - HsTC2 DNA Tc2 -1744 154 38 247 241 0 0 chr15 20592135 20592189 -80788332 - MER54A LTR ERVL -834 67 14 252 218 36 0 chr15 20592387 20592442 -80788079 - MER52A LTR ERV1 0 1755 1699 5005 226 78 47 chr15 20592454 20592994 -80787527 - MER52A LTR ERV1 -270 1485 964 180 0 0 0 chr15 20592994 20593014 -80787507 + (CTCTG)n Simple_repeat Simple_repeat 1 20 0 5005 226 78 47 chr15 20593014 20593912 -80786609 - MER52A LTR ERV1 -791 964 1 868 246 104 106 chr15 20594095 20595070 -80785451 + LTR28 LTR ERV1 1 1755 0 656 224 64 4 chr15 20595071 20595336 -80785185 + L1M4 LINE L1 5215 5485 -699 552 223 0 9 chr15 20596836 20596948 -80783573 + FLAM_A SINE Alu 20 130 -12 200 278 0 0 chr15 20597398 20597452 -80783069 + MIR SINE MIR 1 54 -208 213 255 0 0 chr15 20598348 20598399 -80782122 + MIR SINE MIR 24 74 -188 2308 92 0 7 chr15 20598465 20598771 -80781750 - AluSx SINE Alu -8 304 1 1991 132 24 7 chr15 20603541 20603865 -80776656 - AluSx SINE Alu 0 312 1 237 33 0 0 chr15 20604167 20604197 -80776324 + (TG)n Simple_repeat Simple_repeat 2 31 0 785 317 65 18 chr15 20604332 20604729 -80775792 - L2 LINE L2 -71 3242 2827 286 78 20 20 chr15 20604921 20604972 -80775549 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 1663 224 42 8 chr15 20604978 20605335 -80775186 + MLT1A2 LTR MaLR 2 370 -4 476 13 66 0 chr15 20605338 20605414 -80775107 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 657 103 0 0 chr15 20605513 20605600 -80774921 - AluY SINE Alu -20 291 205 3033 44 14 0 chr15 20606437 20606804 -80773717 + LTR10C LTR ERV1 1 372 -219 373 269 86 82 chr15 20606904 20607172 -80773349 + L1M4 LINE L1 4828 5096 -1050 2744 39 39 3 chr15 20607329 20607696 -80772825 + L1PA4 LINE L1 5785 6163 0 327 239 72 43 chr15 20607864 20608002 -80772519 - HsTC2 DNA Tc2 -25 1873 1732 923 155 19 0 chr15 20608002 20608163 -80772358 + L1M2 LINE L1 5509 5672 -619 565 311 75 23 chr15 20608165 20608470 -80772051 - HsTC2 DNA Tc2 -169 1729 1233 245 284 113 32 chr15 20608467 20608609 -80771912 - HsTC2 DNA Tc2 -1744 154 3 * 2431 84 3 0 chr15 20609133 20609441 -80771080 + AluSx SINE Alu 1 309 -3 253 269 0 15 chr15 20609913 20609980 -80770541 - LTR38 LTR ERV1 -362 194 129 1127 235 209 26 chr15 20610637 20611218 -80769303 + L1M4 LINE L1 4591 5301 -845 1606 141 15 19 chr15 20611218 20611488 -80769033 + AluJb SINE Alu 26 294 -18 1127 235 209 26 chr15 20611488 20611548 -80768973 + L1M4 LINE L1 5301 5349 -797 2685 204 79 25 chr15 20611589 20612128 -80768393 + L1MC3 LINE L1 7072 7656 -129 2211 61 0 48 chr15 20612128 20612461 -80768060 + AluY SINE Alu 1 319 0 2685 204 79 25 chr15 20612461 20612590 -80767931 + L1MC3 LINE L1 7656 7777 -8 200 173 0 39 chr15 20612698 20612750 -80767771 + T-rich Low_complexity Low_complexity 2 51 0 535 247 34 14 chr15 20612826 20612972 -80767549 + L1MD3 LINE L1 7565 7713 -282 772 296 71 40 chr15 20612987 20613311 -80767210 + MLT1E LTR MaLR 12 345 -248 1108 157 43 62 chr15 20613311 20613350 -80767171 - L1MCa LINE L1 -4207 2219 2181 2175 119 0 0 chr15 20613350 20613645 -80766876 + AluSx SINE Alu 1 295 -17 1108 157 43 62 chr15 20613645 20613910 -80766611 - L1MCa LINE L1 -4245 2181 1921 * 2864 228 46 27 chr15 20613908 20614043 -80766478 + L1MCa LINE L1 2212 2343 -4083 1513 176 3 44 chr15 20614043 20614361 -80766160 + AluJo SINE Alu 1 305 -7 2864 228 46 27 chr15 20614361 20615412 -80765109 + L1MCa LINE L1 2343 3412 -3014 2994 182 8 45 chr15 20616813 20617459 -80763062 + MER54B LTR ERVL 1 678 -115 337 155 0 52 chr15 20619965 20620023 -80760498 - HERVL74 LTR ERVL -1048 4637 4583 * 1032 148 7 0 chr15 20620005 20620160 -80760361 - HERVL74 LTR ERVL -1612 4073 3918 895 183 7 13 chr15 20620163 20620316 -80760205 - HERVL74 LTR ERVL -2043 3642 3491 2186 225 33 39 chr15 20620317 20620887 -80759634 - HERVL74 LTR ERVL -2353 3332 2766 2496 194 25 15 chr15 20620920 20621440 -80759081 - HERVL74 LTR ERVL -2873 2812 2288 1562 107 60 0 chr15 20621440 20621655 -80758866 - MER30 DNA MER1_type 0 230 3 186 103 0 0 chr15 20621876 20621905 -80758616 + (TC)n Simple_repeat Simple_repeat 2 30 0 1974 181 19 2 chr15 20623250 20623880 -80756641 + MER54B LTR ERVL 1 682 -111 365 267 120 35 chr15 20624092 20624350 -80756171 + L1MEc LINE L1 62 341 -6055 21 57 0 0 chr15 20625198 20625233 -80755288 + AT_rich Low_complexity Low_complexity 1 35 0 8091 29 1 1 chr15 20625240 20626324 -80754197 + L1PA4 LINE L1 5072 6155 0 376 303 88 19 chr15 20626976 20627293 -80753228 + L1M4 LINE L1 4754 5092 -1054 321 327 157 9 chr15 20627339 20627562 -80752959 + MIR SINE MIR 7 262 0 332 240 70 23 chr15 20627601 20627730 -80752791 - HsTC2 DNA Tc2 -23 1875 1741 811 174 15 0 chr15 20627770 20627946 -80752575 + L1M2 LINE L1 5517 5707 -595 2025 135 10 0 chr15 20629210 20629506 -80751015 + AluSg SINE Alu 1 299 -11 1661 193 146 57 chr15 20629634 20630307 -80750214 - LTR48 LTR ERV1 0 644 1 2152 96 7 0 chr15 20630430 20630722 -80749799 + AluY SINE Alu 14 307 -4 23 33 0 0 chr15 20630746 20630776 -80749745 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr15 20631201 20631223 -80749298 + AT_rich Low_complexity Low_complexity 1 22 0 639 200 8 0 chr15 20631369 20631489 -80749032 - MER70B LTR ERVL -419 159 39 911 198 70 40 chr15 20631528 20631826 -80748695 - L1ME1 LINE L1 -118 6048 5742 2173 238 62 32 chr15 20632048 20632222 -80748299 - L1ME1 LINE L1 -918 5228 5061 405 0 0 0 chr15 20632222 20632267 -80748254 + (TG)n Simple_repeat Simple_repeat 1 45 0 1519 189 18 4 chr15 20632268 20632548 -80747973 - AluJb SINE Alu -28 284 1 2173 238 62 32 chr15 20632548 20633192 -80747329 - L1ME1 LINE L1 -1084 5062 4383 2529 61 3 6 chr15 20634996 20635308 -80745213 - AluY SINE Alu 0 311 1 1862 221 8 3 chr15 20635818 20636180 -80744341 - MER54B LTR ERVL -428 365 2 444 215 136 58 chr15 20636342 20636584 -80743937 - HsTC2 DNA Tc2 -231 1667 1231 283 261 14 0 chr15 20636581 20636650 -80743871 - HsTC2 DNA Tc2 -1747 151 82 * 368 318 13 26 chr15 20637633 20637787 -80742734 - MLT1E LTR MaLR -441 152 1 758 187 43 0 chr15 20637791 20637930 -80742591 - L1MD3 LINE L1 -282 7713 7569 1590 201 0 7 chr15 20637996 20638280 -80742241 + AluJb SINE Alu 1 282 -30 1357 128 0 5 chr15 20638300 20638496 -80742025 - AluSg/x SINE Alu -32 278 84 2671 229 120 91 chr15 20638680 20639264 -80741257 - L1MC3 LINE L1 0 7785 7219 229 292 0 14 chr15 20639264 20639336 -80741185 - MLT1H LTR MaLR -401 148 78 2671 229 120 91 chr15 20639336 20639572 -80740949 - L1MC3 LINE L1 -566 7219 6991 239 0 32 0 chr15 20639572 20639603 -80740918 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2671 229 120 91 chr15 20639603 20640114 -80740407 - L1MC3 LINE L1 -794 6991 6342 589 287 80 3 chr15 20640163 20640449 -80740072 - L1MC3 LINE L1 -1624 6161 5854 3385 212 45 150 chr15 20640458 20641528 -80738993 - L1MC3 LINE L1 -725 5453 4272 2030 150 0 0 chr15 20641528 20641822 -80738699 - AluSq SINE Alu -19 294 1 3385 212 45 150 chr15 20641822 20641874 -80738647 - L1MC3 LINE L1 -1906 4272 4216 1266 203 0 8 chr15 20641874 20642111 -80738410 - AluJo SINE Alu -77 235 1 3385 212 45 150 chr15 20642111 20642125 -80738396 - L1MC3 LINE L1 -1962 4216 4202 2172 99 0 3 chr15 20642125 20642408 -80738113 - AluSx SINE Alu -20 292 11 3385 212 45 150 chr15 20642408 20643208 -80737313 - L1MC3 LINE L1 -1976 4202 3520 386 228 213 25 chr15 20643208 20643405 -80737116 + MLT1E LTR MaLR 346 622 -2 747 227 50 12 chr15 20643406 20643648 -80736873 + L1MD3 LINE L1 7721 7971 -24 5001 181 20 24 chr15 20643649 20644654 -80735867 - L1MA7 LINE L1 -2 6289 5287 3844 98 8 6 chr15 20644654 20645164 -80735357 - MER9 LTR ERVK 0 511 1 5001 181 20 24 chr15 20645164 20645189 -80735332 - L1MA7 LINE L1 -1004 5287 5263 4200 94 25 4 chr15 20645825 20646377 -80734144 - LTR6A LTR ERV1 0 564 1 3706 226 79 21 chr15 20647414 20648264 -80732257 + MER54A LTR ERVL 3 901 0 1027 247 87 31 chr15 20648562 20649020 -80731501 + HsTC2 DNA Tc2 1216 1875 -23 234 319 21 11 chr15 20649104 20649198 -80731323 - MIR SINE MIR -36 226 132 22 80 0 0 chr15 20649476 20649526 -80730995 + AT_rich Low_complexity Low_complexity 1 50 0 1533 201 3 13 chr15 20651017 20651315 -80729206 + AluJo SINE Alu 1 295 -17 1704 211 28 11 chr15 20651330 20651686 -80728835 - MER47A DNA MER2_type -1 365 4 322 256 12 0 chr15 20652093 20652179 -80728342 - L1MEc LINE L1 -6210 186 100 2330 95 0 3 chr15 20652236 20652531 -80727990 + AluSc SINE Alu 1 294 -15 2495 171 38 71 chr15 20652795 20653093 -80727428 - MER7C DNA MER2_type -2426 602 296 2345 84 3 0 chr15 20653093 20653389 -80727132 + AluSp SINE Alu 1 297 -16 2495 171 38 71 chr15 20653389 20653578 -80726943 - MER7C DNA MER2_type -2732 296 133 1783 156 3 59 chr15 20653578 20653898 -80726623 + AluSx SINE Alu 1 302 -10 2495 171 38 71 chr15 20653898 20654016 -80726505 - MER7C DNA MER2_type -2895 133 13 2054 93 14 4 chr15 20654254 20654533 -80725988 + AluSg SINE Alu 1 282 -28 349 206 113 64 chr15 20654546 20654687 -80725834 - HsTC2 DNA Tc2 -344 1554 1231 2356 78 0 10 chr15 20655680 20655987 -80724534 + AluY SINE Alu 2 305 -6 1941 285 32 22 chr15 20656820 20656902 -80723619 - L1MCa LINE L1 -3014 3412 3332 198 0 0 0 chr15 20656902 20656924 -80723597 + (TA)n Simple_repeat Simple_repeat 2 23 0 2390 54 40 0 chr15 20656925 20657221 -80723300 - AluSg SINE Alu 0 310 3 1941 285 32 22 chr15 20657221 20657589 -80722932 - L1MCa LINE L1 -3094 3332 2969 2892 88 3 0 chr15 20657589 20657943 -80722578 + THE1A LTR MaLR 1 355 0 1941 285 32 22 chr15 20657943 20658310 -80722211 - L1MCa LINE L1 -3457 2969 2584 1111 108 0 7 chr15 20658311 20658459 -80722062 - AluSg/x SINE Alu -94 218 72 441 193 59 8 chr15 20658515 20658634 -80721887 - L1MA8 LINE L1 -4 6287 6163 249 216 0 0 chr15 20658632 20658683 -80721838 - L1ME LINE L1 -706 5740 5690 * 1399 141 49 20 chr15 20658670 20658763 -80721758 - L1MCa LINE L1 -3954 2472 2383 1565 187 18 0 chr15 20658763 20659072 -80721449 - AluSx SINE Alu 0 314 1 1399 141 49 20 chr15 20659072 20659322 -80721199 - L1MCa LINE L1 -4043 2383 2210 362 193 118 8 chr15 20659322 20659421 -80721100 + L1MCa LINE L1 1921 2036 -4390 183 42 0 0 chr15 20659421 20659445 -80721076 + (TG)n Simple_repeat Simple_repeat 2 25 0 362 193 118 8 chr15 20659445 20659464 -80721057 + L1MCa LINE L1 2036 2052 -4374 509 248 165 0 chr15 20659469 20659602 -80720919 - MER41E LTR ERV1 -335 177 23 5565 228 77 43 chr15 20660039 20660196 -80720325 - L1MC3 LINE L1 -6 7779 7629 2086 117 0 3 chr15 20660196 20660513 -80720008 - AluSx SINE Alu 0 316 1 5565 228 77 43 chr15 20660513 20662213 -80718308 - L1MC3 LINE L1 -156 7629 5858 2011 132 13 7 chr15 20662226 20662530 -80717991 - AluSq SINE Alu -7 306 1 1428 251 71 18 chr15 20662531 20663168 -80717353 - L1MC3 LINE L1 -722 5452 4782 1682 230 6 11 chr15 20663168 20663516 -80717005 - MER52A LTR ERV1 0 1755 1410 1073 282 8 56 chr15 20663539 20664151 -80716370 - MER52A LTR ERV1 -570 1185 464 1138 184 41 33 chr15 20664151 20664396 -80716125 - LTR12 LTR ERV1 -251 463 217 48 95 0 0 chr15 20665080 20665164 -80715357 + AT_rich Low_complexity Low_complexity 1 84 0 719 94 0 28 chr15 20666171 20666277 -80714244 - FLAM_C SINE Alu -4 139 37 1312 184 58 41 chr15 20666322 20666664 -80713857 - MLT1B LTR MaLR 0 390 43 1390 205 85 53 chr15 20666665 20666767 -80713754 - MER39 LTR ERV1 0 707 610 2139 112 0 3 chr15 20666767 20667061 -80713460 - AluSq SINE Alu -20 293 1 1390 205 85 53 chr15 20667061 20667439 -80713082 - MER39 LTR ERV1 -97 610 4 2459 54 0 7 chr15 20667719 20668017 -80712504 - AluY SINE Alu -15 296 1 2175 113 7 0 chr15 20668079 20668371 -80712150 - AluSx SINE Alu -18 294 1 2379 85 0 3 chr15 20668376 20668683 -80711838 - AluY SINE Alu -4 307 2 287 313 0 0 chr15 20668719 20668799 -80711722 - L1ME1 LINE L1 -30 6136 6057 10312 198 36 10 chr15 20668800 20670425 -80710096 - MER70B-int LTR ERVL -1326 3697 2008 2342 109 0 0 chr15 20670425 20670729 -80709792 + AluSq SINE Alu 1 304 -9 10312 198 36 10 chr15 20670729 20671128 -80709393 - MER70B-int LTR ERVL -3015 2008 1621 5643 189 51 14 chr15 20671138 20671199 -80709322 - MER70B-int LTR ERVL -3867 1156 1099 1984 125 21 0 chr15 20671199 20671488 -80709033 - AluSg SINE Alu -15 295 1 5643 189 51 14 chr15 20671488 20672541 -80707980 - MER70B-int LTR ERVL -3924 1099 1 2020 225 19 16 chr15 20672545 20673030 -80707491 - MER70B LTR ERVL -2 576 91 797 239 0 6 chr15 20673031 20673190 -80707331 - MER70A LTR ERVL -314 158 1 512 256 211 0 chr15 20673193 20673416 -80707105 - L1ME1 LINE L1 -127 6039 5770 818 132 8 0 chr15 20673431 20673552 -80706969 - AluSp/q SINE Alu -21 292 171 23 33 0 0 chr15 20673558 20673588 -80706933 + AT_rich Low_complexity Low_complexity 1 30 0 773 182 0 198 chr15 20673637 20673715 -80706806 - L1ME1 LINE L1 -493 5671 5572 1903 144 3 33 chr15 20673715 20673850 -80706671 + AluSx SINE Alu 1 138 -174 2145 106 0 14 chr15 20673850 20674133 -80706388 + AluSx SINE Alu 1 279 -33 309 26 0 0 chr15 20674133 20674171 -80706350 + (CA)n Simple_repeat Simple_repeat 1 38 0 1903 144 3 33 chr15 20674171 20674340 -80706181 + AluSx SINE Alu 136 297 -15 773 182 0 198 chr15 20674340 20674463 -80706058 - L1ME1 LINE L1 -592 5572 5559 311 59 0 20 chr15 20674463 20674514 -80706007 + (TG)n Simple_repeat Simple_repeat 1 50 0 773 182 0 198 chr15 20674514 20674728 -80705793 - L1ME1 LINE L1 -605 5559 5285 832 259 55 64 chr15 20674779 20674877 -80705644 - L1ME1 LINE L1 -917 5229 5132 2250 110 3 0 chr15 20674877 20675177 -80705344 - AluSx SINE Alu -11 301 1 832 259 55 64 chr15 20675177 20675533 -80704988 - L1ME1 LINE L1 -1014 5132 4779 203 224 0 20 chr15 20675533 20675582 -80704939 + (TA)n Simple_repeat Simple_repeat 2 49 0 1197 248 48 48 chr15 20675585 20675670 -80704851 - L1ME1 LINE L1 -1330 4816 4732 2198 96 3 0 chr15 20675670 20675976 -80704545 + AluSp SINE Alu 1 307 0 1197 248 48 48 chr15 20675976 20676156 -80704365 - L1ME1 LINE L1 -1414 4732 4553 2262 101 0 7 chr15 20676156 20676452 -80704069 + AluSg SINE Alu 1 294 -16 1197 248 48 48 chr15 20676452 20676684 -80703837 - L1ME1 LINE L1 -1592 4554 4317 2144 110 7 0 chr15 20677712 20678004 -80702517 + AluSx SINE Alu 1 294 -18 453 50 0 0 chr15 20678567 20678627 -80701894 + (CGGGGG)n Simple_repeat Simple_repeat 2 61 0 2057 82 0 94 chr15 20679242 20679584 -80700937 - AluSc SINE Alu 0 309 1 1695 233 22 0 chr15 20679708 20680064 -80700457 - MER54B LTR ERVL -429 364 1 738 230 146 42 chr15 20680198 20680533 -80699988 - HsTC2 DNA Tc2 -122 1776 1231 278 259 0 0 chr15 20680529 20680587 -80699934 - HsTC2 DNA Tc2 -1756 142 85 * 22 0 0 0 chr15 20680598 20680620 -80699901 + AT_rich Low_complexity Low_complexity 1 22 0 2186 83 10 20 chr15 20680667 20680968 -80699553 - AluSq SINE Alu -15 298 1 1164 178 18 4 chr15 20681263 20681488 -80699033 - AluJb SINE Alu -1 311 84 404 211 16 24 chr15 20682612 20682735 -80697786 - L1ME1 LINE L1 -2973 3173 3052 681 219 7 0 chr15 20682768 20682905 -80697616 - L1MD3 LINE L1 -282 7713 7576 1430 213 3 56 chr15 20682989 20683313 -80697208 + AluJb SINE Alu 1 307 -5 2651 221 126 12 chr15 20683409 20683753 -80696768 - L1MC3 LINE L1 -11 7774 7471 2405 71 3 0 chr15 20683753 20684047 -80696474 - AluY SINE Alu -16 295 1 2651 221 126 12 chr15 20684047 20684501 -80696020 - L1MC3 LINE L1 -314 7471 6885 646 193 39 8 chr15 20684506 20684653 -80695868 - MSTC LTR MaLR -244 152 1 439 253 0 108 chr15 20685003 20685078 -80695443 + MER54A LTR ERVL 1 83 -818 1932 129 20 14 chr15 20685078 20685373 -80695148 + AluSx SINE Alu 1 297 -15 439 253 0 108 chr15 20685373 20685491 -80695030 + MER54A LTR ERVL 83 173 -728 233 277 24 24 chr15 20685615 20685698 -80694823 - MIR SINE MIR -39 223 141 2240 118 0 7 chr15 20685861 20686167 -80694354 + AluSx SINE Alu 1 304 -8 243 274 154 30 chr15 20686223 20686457 -80694064 - L1 LINE L1 -1125 5021 4759 3821 135 47 72 chr15 20688053 20688762 -80691759 - LTR8 LTR ERV1 0 691 1 1869 124 11 28 chr15 20688869 20689151 -80691370 + AluSg SINE Alu 1 277 -33 3529 122 16 2 chr15 20689151 20689653 -80690868 + LTR10D LTR ERV1 4 512 -1 3954 96 49 2 chr15 20689948 20690477 -80690044 - MER41A LTR ERV1 0 554 1 28 48 0 0 chr15 20690560 20690602 -80689919 + AT_rich Low_complexity Low_complexity 1 42 0 1751 181 47 0 chr15 20690846 20691189 -80689332 - MER47A DNA MER2_type 0 366 8 771 153 0 0 chr15 20691371 20691482 -80689039 + AluSg/x SINE Alu 192 302 -10 3300 173 22 10 chr15 20691504 20692098 -80688423 - MER7C DNA MER2_type 0 602 2 266 238 38 76 chr15 20692304 20692409 -80688112 - HsTC2 DNA Tc2 -345 1553 1277 257 246 98 0 chr15 20692440 20692501 -80688020 - HsTC2 DNA Tc2 -1747 151 85 331 245 19 9 chr15 20694246 20694352 -80686169 - L1 LINE L1 -3014 3132 3026 35 0 0 0 chr15 20694352 20694387 -80686134 + AT_rich Low_complexity Low_complexity 1 35 0 2104 98 0 7 chr15 20694387 20694682 -80685839 - AluY SINE Alu -18 293 1 2300 110 7 0 chr15 20694686 20694994 -80685527 - AluSq SINE Alu -3 310 1 614 232 40 27 chr15 20695031 20695255 -80685266 - L1 LINE L1 -3138 3008 2782 246 139 0 0 chr15 20695255 20695298 -80685223 - MER49 LTR ERV1 0 923 881 * 4156 159 27 22 chr15 20695294 20695397 -80685124 - MER49 LTR ERV1 -206 717 616 2276 113 0 0 chr15 20695397 20695697 -80684824 - AluSx SINE Alu -12 300 1 4156 159 27 22 chr15 20695697 20696303 -80684218 - MER49 LTR ERV1 -307 616 5 858 246 86 4 chr15 20696308 20696588 -80683933 - L1 LINE L1 -3588 2558 2256 729 203 22 11 chr15 20696591 20696773 -80683748 - L1MA8 LINE L1 -2 6569 6386 1034 141 7 0 chr15 20696773 20696922 -80683599 - AluJb SINE Alu -34 278 129 1797 200 44 69 chr15 20696944 20697729 -80682792 - L1MA8 LINE L1 -192 6379 5576 2553 47 0 10 chr15 20697729 20698026 -80682495 - AluY SINE Alu -17 294 1 1797 200 44 69 chr15 20698026 20698335 -80682186 - L1MA8 LINE L1 -995 5576 2213 402 189 79 0 chr15 20698335 20698462 -80682059 + L1MCa LINE L1 1918 2054 -4372 239 191 0 0 chr15 20698462 20698509 -80682012 + LTR66 LTR ERVL 393 439 -171 548 264 7 0 chr15 20698515 20698663 -80681858 + L1MCa LINE L1 2052 2200 -4226 834 265 118 29 chr15 20698669 20698982 -80681539 - MLT1E LTR MaLR -248 345 5 527 273 7 0 chr15 20698991 20699134 -80681387 - L1MD3 LINE L1 -283 7712 7569 1628 153 3 40 chr15 20699207 20699507 -80681014 + AluJb SINE Alu 1 289 -23 5236 243 57 58 chr15 20699577 20701216 -80679305 - L1MC3 LINE L1 0 7785 6146 1946 136 0 34 chr15 20701216 20701546 -80678975 - AluSx SINE Alu 0 320 1 5236 243 57 58 chr15 20701546 20701835 -80678686 - L1MC3 LINE L1 -1639 6146 5858 660 234 47 0 chr15 20701838 20702059 -80678462 - L1MC3 LINE L1 -720 5454 5225 2417 84 3 0 chr15 20702059 20702358 -80678163 - AluY SINE Alu -11 300 1 2516 67 13 0 chr15 20702645 20702945 -80677576 + AluY SINE Alu 2 305 -6 328 325 26 0 chr15 20703149 20703266 -80677255 + HsTC2 DNA Tc2 35 154 -1744 * 1008 233 89 28 chr15 20703264 20703701 -80676820 + HsTC2 DNA Tc2 1234 1873 -25 257 287 56 9 chr15 20703772 20703880 -80676641 - MIR SINE MIR -31 231 119 723 200 23 0 chr15 20704254 20704384 -80676137 + AluJo SINE Alu 3 135 -177 2429 106 0 0 chr15 20704387 20704698 -80675823 + AluSx SINE Alu 1 311 -1 2260 110 3 0 chr15 20704954 20705253 -80675268 + AluSx SINE Alu 3 302 -10 1933 81 84 0 chr15 20706161 20706280 -80674241 + AluSx SINE Alu 1 109 -203 273 29 0 0 chr15 20706280 20706314 -80674207 + (CA)n Simple_repeat Simple_repeat 2 35 0 1933 81 84 0 chr15 20706314 20706467 -80674054 + AluSx SINE Alu 109 296 -16 39 22 0 0 chr15 20707624 20707670 -80672851 + AT_rich Low_complexity Low_complexity 1 46 0 2173 112 3 10 chr15 20707763 20708075 -80672446 + AluSx SINE Alu 1 310 -2 653 235 56 34 chr15 20708289 20708468 -80672053 + MER58A DNA MER1_type 16 198 -26 231 274 32 32 chr15 20709104 20709199 -80671322 - L1ME LINE L1 -5928 142 48 695 165 0 0 chr15 20709366 20709475 -80671046 - AluSg/x SINE Alu -21 291 183 682 140 0 0 chr15 20709477 20709577 -80670944 - AluJo/FLAM SINE Alu -199 113 14 2121 107 0 31 chr15 20709854 20710144 -80670377 + AluSq SINE Alu 1 281 -32 288 0 0 0 chr15 20710144 20710176 -80670345 + (GA)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr15 20710823 20710845 -80669676 + AT_rich Low_complexity Low_complexity 1 22 0 2064 124 18 72 chr15 20711029 20711100 -80669421 - MER47A DNA MER2_type -1957 366 293 2284 98 3 0 chr15 20711100 20711385 -80669136 + AluSg SINE Alu 1 286 -24 2064 124 18 72 chr15 20711385 20711700 -80668821 - MER47A DNA MER2_type -2030 293 1 1975 153 20 0 chr15 20712282 20712576 -80667945 + AluSx SINE Alu 1 300 -12 1622 148 0 104 chr15 20712581 20712918 -80667603 + AluJb SINE Alu 1 302 -10 231 250 172 39 chr15 20713216 20713370 -80667151 - L1MC/D LINE L1 -2004 5804 5615 3161 146 31 29 chr15 20713370 20713926 -80666595 - MER41D LTR ERV1 0 557 1 231 250 172 39 chr15 20713926 20713975 -80666546 - L1MC/D LINE L1 -2193 5615 5574 381 58 0 0 chr15 20714281 20714333 -80666188 + (TG)n Simple_repeat Simple_repeat 1 52 0 2676 155 19 25 chr15 20714595 20715079 -80665442 + MER31A LTR ERV1 5 485 0 2399 93 0 0 chr15 20715710 20716011 -80664510 - AluSx SINE Alu -11 301 1 431 78 62 0 chr15 20716089 20716153 -80664368 + Alu SINE Alu 5 72 -237 460 111 12 12 chr15 20716573 20716654 -80663867 + L1MB3 LINE L1 6100 6180 -3 2189 119 3 0 chr15 20716676 20716970 -80663551 - AluSg SINE Alu -15 295 1 2363 107 0 0 chr15 20717474 20717782 -80662739 - AluSx SINE Alu -4 308 1 2466 75 0 10 chr15 20717864 20718169 -80662352 - AluY SINE Alu -9 302 1 2343 104 7 0 chr15 20718332 20718631 -80661890 + AluSx SINE Alu 1 301 -11 1163 228 134 37 chr15 20718632 20718959 -80661562 + MER39 LTR ERV1 19 313 -394 2352 99 0 13 chr15 20718959 20719273 -80661248 + AluSg SINE Alu 1 310 0 1163 228 134 37 chr15 20719273 20719407 -80661114 + MER39 LTR ERV1 313 662 -45 1642 177 7 0 chr15 20719481 20719758 -80660763 - AluSx SINE Alu -16 296 18 3577 194 62 90 chr15 20719821 20720001 -80660520 - LTR49-int LTR ERV1 -3587 1349 1165 2247 113 0 0 chr15 20720001 20720301 -80660220 - AluSx SINE Alu -11 301 2 3577 194 62 90 chr15 20720301 20721062 -80659459 - LTR49-int LTR ERV1 -3771 1165 440 1816 113 4 4 chr15 20721062 20721329 -80659192 + AluSx SINE Alu 44 310 0 3577 194 62 90 chr15 20721329 20721474 -80659047 - LTR49-int LTR ERV1 -4496 440 292 2329 109 3 0 chr15 20721491 20721821 -80658700 + AluSx SINE Alu 1 312 0 355 228 51 112 chr15 20721828 20721899 -80658622 - LTR49-int LTR ERV1 -4661 1670 1596 1934 143 0 3 chr15 20721899 20722185 -80658336 + AluJo SINE Alu 1 285 -27 355 228 51 112 chr15 20722185 20722310 -80658211 - LTR49-int LTR ERV1 -4735 1596 1486 317 226 59 39 chr15 20722311 20722413 -80658108 + U13 snRNA snRNA 1 104 0 208 217 14 58 chr15 20722417 20722486 -80658035 + A-rich Low_complexity Low_complexity 5 70 0 392 182 74 74 chr15 20722487 20722608 -80657913 - LTR49-int LTR ERV1 -4836 1495 1375 2541 59 0 3 chr15 20722779 20723083 -80657438 - AluY SINE Alu -8 303 1 848 231 68 57 chr15 20723426 20723839 -80656682 - MER39 LTR ERV1 -27 650 269 385 283 0 0 chr15 20723823 20723929 -80656592 - MER34 LTR ERV1 -428 114 9 * 276 53 0 0 chr15 20723957 20723995 -80656526 + (CA)n Simple_repeat Simple_repeat 2 39 0 927 230 67 60 chr15 20724821 20725037 -80655484 + MLT1E1 LTR MaLR 54 267 -326 1866 79 0 17 chr15 20725037 20725277 -80655244 + AluY SINE Alu 55 290 -21 927 230 67 60 chr15 20725277 20725430 -80655091 + MLT1E1 LTR MaLR 267 417 -176 1727 190 7 3 chr15 20725430 20725730 -80654791 + AluJb SINE Alu 7 307 -5 927 230 67 60 chr15 20725730 20725859 -80654662 + MLT1E1 LTR MaLR 417 544 -49 1622 191 11 4 chr15 20725859 20726136 -80654385 + AluJo SINE Alu 1 279 -33 2210 137 34 0 chr15 20726136 20726487 -80654034 + THE1B LTR MaLR 2 364 0 927 230 67 60 chr15 20726487 20726521 -80654000 + MLT1E1 LTR MaLR 543 585 -8 215 59 0 29 chr15 20726718 20726752 -80653769 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 2282 86 3 0 chr15 20726862 20727152 -80653369 + AluSc SINE Alu 1 291 -18 2039 93 117 11 chr15 20727300 20727746 -80652775 - LTR14B LTR ERVK 0 608 1 865 264 117 39 chr15 20727866 20728302 -80652219 + LTR41 LTR ERVL 1 470 -303 233 227 0 53 chr15 20728359 20728434 -80652087 + LTR41 LTR ERVL 693 763 -10 282 261 67 52 chr15 20728753 20728887 -80651634 + ERVL LTR ERVL 351 486 -5278 1481 176 14 21 chr15 20729379 20729668 -80650853 + AluJb SINE Alu 12 298 -14 318 177 0 0 chr15 20729672 20729734 -80650787 - L1 LINE L1 -1676 4470 4409 334 232 21 21 chr15 20729867 20729962 -80650559 + ERVL LTR ERVL 1548 1642 -3843 895 260 92 0 chr15 20730033 20730260 -80650261 + MER82 DNA MER2_type 405 652 -1 4983 73 52 9 chr15 20731038 20731698 -80648823 - LTR12 LTR ERV1 0 688 1 198 0 0 0 chr15 20731975 20731997 -80648524 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1748 159 3 20 chr15 20732306 20732607 -80647914 + AluJb SINE Alu 1 296 -16 21 0 0 0 chr15 20732673 20732694 -80647827 + AT_rich Low_complexity Low_complexity 1 21 0 2325 112 0 0 chr15 20732927 20733239 -80647282 + AluSx SINE Alu 1 312 0 1881 100 126 0 chr15 20733249 20733520 -80647001 + AluSx SINE Alu 1 305 -7 1228 127 0 0 chr15 20733520 20733686 -80646835 + AluSg/x SINE Alu 134 299 -13 2120 98 0 4 chr15 20733818 20734093 -80646428 + AluSx SINE Alu 30 303 -9 1172 282 59 16 chr15 20734198 20734914 -80645607 - L1MEc LINE L1 -4837 1276 673 5638 117 6 12 chr15 20734915 20735773 -80644748 + L1PA13 LINE L1 5307 6159 -4 544 228 0 8 chr15 20736021 20736148 -80644373 + AluY SINE Alu 180 305 -6 328 325 26 0 chr15 20736353 20736470 -80644051 + HsTC2 DNA Tc2 35 154 -1744 * 962 238 97 25 chr15 20736468 20736901 -80643620 + HsTC2 DNA Tc2 1234 1873 -25 257 287 56 9 chr15 20736972 20737080 -80643441 - MIR SINE MIR -31 231 119 756 166 30 4 chr15 20737658 20737822 -80642699 - MSTA LTR MaLR -208 167 1 2076 130 7 0 chr15 20737922 20738222 -80642299 + AluSc SINE Alu 1 302 -7 209 33 33 0 chr15 20738300 20738330 -80642191 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 837 181 87 0 chr15 20738337 20738486 -80642035 + AluJo SINE Alu 127 288 -24 23 0 0 0 chr15 20738486 20738509 -80642012 + AT_rich Low_complexity Low_complexity 1 23 0 2585 172 59 12 chr15 20738571 20739077 -80641444 - L1MB3 LINE L1 -2 6181 5652 453 206 18 100 chr15 20739077 20739247 -80641274 - AluSg/x SINE Alu -19 290 135 495 175 0 0 chr15 20739658 20739778 -80640743 + G-rich Low_complexity Low_complexity 1 120 0 1209 228 54 33 chr15 20739933 20740032 -80640489 + MER58B DNA MER1_type 1 96 -2324 2375 97 3 0 chr15 20740032 20740332 -80640189 + AluSx SINE Alu 1 301 -11 1209 228 54 33 chr15 20740332 20740566 -80639955 + MER58B DNA MER1_type 96 341 0 1706 174 14 3 chr15 20740589 20740871 -80639650 - AluSx SINE Alu -27 285 1 1898 146 3 3 chr15 20741005 20741299 -80639222 + AluSx SINE Alu 2 295 -17 2235 102 10 3 chr15 20741851 20742144 -80638377 + AluSg SINE Alu 1 295 -15 1200 143 104 17 chr15 20742499 20742729 -80637792 - MSTA LTR MaLR 0 428 179 2183 127 3 0 chr15 20742861 20743161 -80637360 + AluSq SINE Alu 1 301 -12 1665 197 14 57 chr15 20743207 20743277 -80637244 + MER67A LTR ERV1 1 72 -471 2209 110 3 0 chr15 20743277 20743576 -80636945 + AluSq SINE Alu 2 301 -12 1665 197 14 57 chr15 20743576 20743927 -80636594 + MER67A LTR ERV1 72 404 -139 1803 149 6 19 chr15 20743945 20744261 -80636260 - AluSx SINE Alu 0 312 1 453 158 13 0 chr15 20744263 20744339 -80636182 - FLAM_A SINE Alu -34 108 32 868 182 7 7 chr15 20744366 20744520 -80636001 + MER67A LTR ERV1 390 543 0 1584 119 61 61 chr15 20744751 20744897 -80635624 - AluJb SINE Alu -17 295 147 2158 102 3 33 chr15 20744897 20745202 -80635319 - AluSg SINE Alu -12 298 3 1584 119 61 61 chr15 20745202 20745332 -80635189 - AluJb SINE Alu -164 148 19 24 41 0 20 chr15 20745614 20745651 -80634870 + AT_rich Low_complexity Low_complexity 1 38 -10 1476 117 167 8 chr15 20745651 20745908 -80634613 - AluSc SINE Alu -1 298 1 24 41 0 20 chr15 20745908 20745919 -80634602 + AT_rich Low_complexity Low_complexity 38 48 0 831 244 151 26 chr15 20746510 20746855 -80633666 + L1MC4 LINE L1 6493 6880 -1162 1360 196 109 7 chr15 20746903 20747179 -80633342 + AluJo SINE Alu 1 304 -8 358 175 0 0 chr15 20747179 20747236 -80633285 + L1MA5A LINE L1 6043 6099 -198 3323 137 61 4 chr15 20747271 20747826 -80632695 - L1MA5 LINE L1 -319 5981 5395 439 312 12 0 chr15 20747876 20748046 -80632475 + L1MC4 LINE L1 7454 7625 -417 231 36 0 0 chr15 20748355 20748383 -80632138 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 312 27 0 0 chr15 20748382 20748419 -80632102 + (GA)n Simple_repeat Simple_repeat 2 38 0 858 197 98 38 chr15 20748419 20748602 -80631919 - AluJo SINE Alu -34 278 85 1093 181 236 57 chr15 20748724 20748911 -80631610 + LTR48 LTR ERV1 1 153 -634 2240 106 3 3 chr15 20748911 20749213 -80631308 + AluSg SINE Alu 1 302 -8 1093 181 236 57 chr15 20749213 20749428 -80631093 + LTR48 LTR ERV1 153 475 -312 935 239 63 28 chr15 20749428 20749683 -80630838 + LTR48B LTR ERV1 381 644 0 207 309 147 0 chr15 20749735 20749803 -80630718 - L2 LINE L2 -44 3269 3192 2463 85 0 0 chr15 20750002 20750309 -80630212 - AluSg SINE Alu -3 307 1 1630 242 57 11 chr15 20750309 20750763 -80629758 - L1MC3 LINE L1 -426 7359 6885 646 193 39 8 chr15 20750768 20750915 -80629606 - MSTC LTR MaLR -244 152 1 439 253 0 108 chr15 20751265 20751340 -80629181 + MER54A LTR ERVL 1 83 -818 1942 128 20 14 chr15 20751340 20751636 -80628885 + AluSx SINE Alu 1 298 -14 439 253 0 108 chr15 20751636 20751754 -80628767 + MER54A LTR ERVL 83 173 -728 233 277 24 24 chr15 20751878 20751961 -80628560 - MIR SINE MIR -39 223 141 2218 121 0 7 chr15 20752124 20752431 -80628090 + AluSx SINE Alu 1 305 -7 243 274 154 30 chr15 20752487 20752721 -80627800 - L1 LINE L1 -1125 5021 4759 23 33 0 0 chr15 20753288 20753318 -80627203 + AT_rich Low_complexity Low_complexity 1 30 0 483 163 39 28 chr15 20753395 20753573 -80626948 + (TA)n Simple_repeat Simple_repeat 1 180 0 2501 34 7 10 chr15 20753654 20753951 -80626570 + AluY SINE Alu 2 297 -14 2287 116 160 2 chr15 20753951 20754357 -80626164 - MER31A LTR ERV1 -15 470 1 628 195 122 12 chr15 20754885 20755049 -80625472 - MER5A DNA MER1_type 0 189 8 2167 102 0 41 chr15 20756420 20756735 -80623786 + AluSq SINE Alu 1 302 -11 243 271 59 12 chr15 20756740 20756825 -80623696 - MIR SINE MIR -146 116 28 308 294 92 8 chr15 20757152 20757271 -80623250 - L1ME3A LINE L1 -260 5910 5782 2195 124 0 13 chr15 20757394 20757709 -80622812 - AluSx SINE Alu -1 311 1 334 369 0 0 chr15 20757713 20757862 -80622659 - L1ME3A LINE L1 -402 5768 5620 1053 268 119 28 chr15 20757868 20758338 -80622183 + L1ME3A LINE L1 5528 6040 -130 321 26 0 0 chr15 20758380 20758418 -80622103 + (TG)n Simple_repeat Simple_repeat 2 39 0 437 49 16 0 chr15 20758427 20758488 -80622033 - AluY SINE Alu -5 306 245 400 192 51 0 chr15 20758484 20758562 -80621959 - AluSq/x SINE Alu -167 145 64 * 506 278 87 80 chr15 20758574 20759088 -80621433 - LTR48B LTR ERV1 0 633 20 1066 175 10 35 chr15 20759089 20759289 -80621232 - AluJb SINE Alu -115 197 3 861 143 32 0 chr15 20759834 20759960 -80620561 + FLAM_C SINE Alu 1 130 -3 1117 185 138 31 chr15 20760126 20760248 -80620273 - AluJo SINE Alu -31 281 173 2259 69 24 0 chr15 20760248 20760536 -80619985 - AluY SINE Alu -16 295 1 1117 185 138 31 chr15 20760536 20760667 -80619854 - AluJo SINE Alu -139 173 1 33 43 0 0 chr15 20760754 20760801 -80619720 + AT_rich Low_complexity Low_complexity 1 47 0 404 248 64 40 chr15 20760869 20760994 -80619527 - MER94 DNA DNA -5 129 2 287 183 139 52 chr15 20761176 20761228 -80619293 - L1MC4 LINE L1 0 8042 7996 1684 166 0 45 chr15 20761228 20761536 -80618985 + AluJo SINE Alu 4 297 -15 287 183 139 52 chr15 20761536 20761598 -80618923 - L1MC4 LINE L1 -46 7996 7918 1712 201 0 3 chr15 20761626 20761924 -80618597 - AluJo SINE Alu -15 297 1 345 24 0 0 chr15 20761979 20762021 -80618500 + (T)n Simple_repeat Simple_repeat 1 42 0 992 183 17 74 chr15 20763416 20763497 -80617024 - AluSx SINE Alu -95 217 133 2214 84 3 7 chr15 20763497 20763809 -80616712 - AluSx SINE Alu 0 311 1 992 183 17 74 chr15 20763809 20763956 -80616565 - AluSx SINE Alu -179 133 1 1935 228 52 21 chr15 20763962 20764485 -80616036 - MER74B LTR ERVL -82 540 2 2434 170 38 57 chr15 20764488 20764800 -80615721 - L1M3 LINE L1 -560 5623 5307 192 97 0 0 chr15 20764800 20764831 -80615690 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1942 147 7 0 chr15 20764831 20765112 -80615409 - AluSx SINE Alu -29 283 1 2434 170 38 57 chr15 20765112 20765163 -80615358 - L1M3 LINE L1 -875 5308 5258 2018 166 0 0 chr15 20765163 20765470 -80615051 - AluSx SINE Alu -5 307 1 2434 170 38 57 chr15 20765470 20765943 -80614578 - L1M3 LINE L1 -925 5258 4793 240 59 0 0 chr15 20766129 20766163 -80614358 + (TG)n Simple_repeat Simple_repeat 1 34 0 872 196 6 30 chr15 20766185 20766353 -80614168 - MLT2D LTR ERVL -54 360 197 2145 123 20 0 chr15 20766354 20766656 -80613865 - AluSx SINE Alu -4 308 1 12637 184 39 20 chr15 20766657 20767138 -80613383 - ERVL LTR ERVL -303 5461 4991 2147 113 0 3 chr15 20767138 20767457 -80613064 - AluSg SINE Alu 0 310 1 12637 184 39 20 chr15 20767457 20769190 -80611331 - ERVL LTR ERVL -773 4991 3198 2176 135 0 6 chr15 20769190 20769501 -80611020 - AluSx SINE Alu -3 309 1 12637 184 39 20 chr15 20769501 20769626 -80610895 - ERVL LTR ERVL -2566 3198 3077 555 258 67 16 chr15 20769610 20769804 -80610717 - ERVL LTR ERVL -5345 419 216 * 841 107 90 0 chr15 20769806 20769928 -80610593 + AluSq/x SINE Alu 1 133 -179 282 264 86 71 chr15 20769939 20770079 -80610442 - ERVL LTR ERVL -5621 143 2 1918 179 42 32 chr15 20770087 20770490 -80610031 - MLT2D LTR ERVL -7 407 1 955 203 81 0 chr15 20770490 20770687 -80609834 - MER58B DNA MER1_type -29 312 100 216 0 0 0 chr15 20770723 20770747 -80609774 + (A)n Simple_repeat Simple_repeat 1 24 0 874 171 7 13 chr15 20770792 20770944 -80609577 + FAM SINE Alu 20 170 -15 480 270 20 7 chr15 20771489 20771641 -80608880 + MIR SINE MIR 2 155 -107 1042 175 0 0 chr15 20771642 20771808 -80608713 + AluJb SINE Alu 137 302 -10 1607 199 3 27 chr15 20771836 20772137 -80608384 - AluJo SINE Alu -5 307 14 32 26 0 0 chr15 20772156 20772195 -80608326 + AT_rich Low_complexity Low_complexity 1 39 0 214 235 59 0 chr15 20772225 20772276 -80608245 + MIR SINE MIR 184 237 -25 2263 114 3 0 chr15 20772730 20773036 -80607485 + AluSg SINE Alu 1 307 -3 725 35 0 0 chr15 20773328 20773414 -80607107 - L1PA3 LINE L1 0 6155 6070 207 0 0 0 chr15 20773481 20773504 -80607017 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2167 101 0 11 chr15 20773507 20773793 -80606728 - AluSc SINE Alu -26 283 1 1470 183 101 6 chr15 20773793 20774131 -80606390 - L1MC3 LINE L1 -23 7762 7393 * 3349 166 50 100 chr15 20774128 20774393 -80606128 - L1MB7 LINE L1 0 6184 5907 2452 100 0 0 chr15 20774393 20774704 -80605817 - AluSx SINE Alu -1 311 1 3349 166 50 100 chr15 20774704 20774751 -80605770 - L1MB7 LINE L1 -277 5907 5859 1719 189 0 3 chr15 20774751 20775052 -80605469 + AluJo SINE Alu 2 301 -11 3349 166 50 100 chr15 20775052 20775198 -80605323 - L1MB7 LINE L1 -325 5859 5707 1512 199 46 26 chr15 20775198 20775504 -80605017 - AluJo SINE Alu 0 312 1 3349 166 50 100 chr15 20775504 20775564 -80604957 - L1MB7 LINE L1 -477 5707 5646 2255 95 0 0 chr15 20775564 20775849 -80604672 - AluSg SINE Alu -17 293 9 3349 166 50 100 chr15 20775849 20775923 -80604598 - L1MB7 LINE L1 -538 5646 5570 1742 163 16 10 chr15 20775923 20776230 -80604291 - AluJo SINE Alu -3 309 1 1868 130 13 23 chr15 20776236 20776544 -80603977 - AluSx SINE Alu -7 305 1 3349 166 50 100 chr15 20776544 20776895 -80603626 - L1MB7 LINE L1 -619 5565 5297 2041 146 7 0 chr15 20776895 20777189 -80603332 - AluSx SINE Alu -16 296 1 3349 166 50 100 chr15 20777189 20777418 -80603103 - L1MB7 LINE L1 -887 5297 5058 304 231 27 7 chr15 20777418 20777565 -80602956 + (TA)n Simple_repeat Simple_repeat 2 151 0 273 133 0 0 chr15 20777593 20777638 -80602883 - L1MB7 LINE L1 -1144 5002 4958 29 28 0 0 chr15 20778103 20778139 -80602382 + AT_rich Low_complexity Low_complexity 1 36 0 322 254 97 6 chr15 20778177 20778342 -80602179 + L1MC3 LINE L1 7444 7623 -162 477 276 91 25 chr15 20778409 20778652 -80601869 - MIR SINE MIR -2 260 2 2232 110 3 0 chr15 20778703 20779002 -80601519 - AluSc SINE Alu -9 300 1 329 187 13 27 chr15 20779075 20779150 -80601371 - MER116 DNA Mariner -6 74 1 2429 91 0 0 chr15 20783253 20783550 -80596971 - AluSq SINE Alu -16 297 1 346 356 169 12 chr15 20784241 20784727 -80595794 + L2 LINE L2 2007 2568 -746 1403 278 109 42 chr15 20787106 20787989 -80592532 + L1MC4 LINE L1 7103 8036 -6 314 238 112 93 chr15 20788200 20788242 -80592279 + L1MC/D LINE L1 5437 5477 -2331 2267 95 10 3 chr15 20788242 20788536 -80591985 - AluSx SINE Alu -16 296 1 314 238 112 93 chr15 20788536 20788707 -80591814 + L1MC/D LINE L1 5477 5654 -2154 765 247 12 18 chr15 20789356 20789526 -80590995 + MER58A DNA MER1_type 1 169 -55 1964 144 7 0 chr15 20794108 20794393 -80586128 - AluSg SINE Alu -23 287 1 2083 147 0 3 chr15 20795554 20795861 -80584660 - AluSx SINE Alu -6 306 1 518 300 29 40 chr15 20796407 20796680 -80583841 - L1MC/D LINE L1 -2204 5604 5335 802 112 19 0 chr15 20797857 20797964 -80582557 - BC200 scRNA scRNA -80 120 12 1815 161 0 7 chr15 20798423 20798708 -80581813 + AluSx SINE Alu 11 293 -19 22 0 0 54 chr15 20798748 20798766 -80581755 + AT_rich Low_complexity Low_complexity 1 18 -17 2111 132 6 0 chr15 20798766 20799077 -80581444 + AluSp SINE Alu 1 313 0 22 0 0 54 chr15 20799077 20799095 -80581426 + AT_rich Low_complexity Low_complexity 18 35 0 1707 163 10 24 chr15 20799102 20799397 -80581124 + AluSx SINE Alu 3 293 -19 280 196 103 10 chr15 20799636 20799733 -80580788 + L1MC5 LINE L1 6970 7075 -886 21 57 0 0 chr15 20800052 20800087 -80580434 + AT_rich Low_complexity Low_complexity 1 35 0 1080 234 108 7 chr15 20801188 20801457 -80579064 - AluJo SINE Alu -6 296 1 362 234 54 18 chr15 20801737 20801848 -80578673 + L1MB4 LINE L1 5587 5701 -479 997 248 129 3 chr15 20802017 20802388 -80578133 + L1MB4 LINE L1 5762 6179 -1 1291 216 40 7 chr15 20802467 20802768 -80577753 + AluJo SINE Alu 1 311 -1 1077 238 65 63 chr15 20802768 20803142 -80577379 + L1M4c LINE L1 7 384 -6000 3852 199 74 43 chr15 20803161 20804060 -80576461 + L1M4c LINE L1 920 1790 -4594 1463 205 0 33 chr15 20804060 20804363 -80576158 - AluJo SINE Alu -19 293 1 3852 199 74 43 chr15 20804363 20804520 -80576001 + L1M4c LINE L1 1790 1941 -4443 2322 74 0 3 chr15 20804520 20804805 -80575716 + AluY SINE Alu 1 284 -27 3852 199 74 43 chr15 20804805 20804904 -80575617 + L1M4c LINE L1 1941 2112 -4272 517 265 76 0 chr15 20804915 20805138 -80575383 + L1M4c LINE L1 2580 2819 -3563 362 118 0 5 chr15 20805140 20805205 -80575316 + Alu SINE Alu 1 46 -256 1306 107 0 0 chr15 20805206 20805374 -80575147 + AluSg/x SINE Alu 132 299 -11 871 245 21 93 chr15 20805374 20805741 -80574780 - MLT1A1 LTR MaLR -33 424 1 4768 213 21 77 chr15 20805764 20806038 -80574483 - MLT1A1-int LTR MaLR -20 1715 1427 683 186 59 0 chr15 20806038 20806156 -80574365 + FLAM_A SINE Alu 1 125 -8 4768 213 21 77 chr15 20806156 20807135 -80573386 - MLT1A1-int LTR MaLR -308 1427 532 217 152 22 0 chr15 20807494 20807520 -80573001 + (TAA)n Simple_repeat Simple_repeat 3 32 -17 2195 88 0 11 chr15 20807520 20807805 -80572716 + AluSg SINE Alu 1 282 -28 217 152 22 0 chr15 20807805 20807824 -80572697 + (TAA)n Simple_repeat Simple_repeat 32 49 0 962 146 53 0 chr15 20807829 20807980 -80572541 - FRAM SINE Alu -21 155 1 986 198 53 5 chr15 20807980 20808167 -80572354 - MLT1A1-int LTR MaLR -1192 543 348 321 319 64 29 chr15 20808167 20808371 -80572150 + PABL_B LTR ERV1 1 211 -456 758 207 38 55 chr15 20809462 20809699 -80570822 + PABL_B LTR ERV1 369 601 -66 1992 153 38 3 chr15 20809718 20810059 -80570462 - MLT1A1-int LTR MaLR -1382 353 1 549 197 21 42 chr15 20810059 20810201 -80570320 - MLT1A1 LTR MaLR 0 365 227 2371 110 0 0 chr15 20810226 20810536 -80569985 - AluSg SINE Alu 0 310 1 775 111 0 0 chr15 20810564 20810663 -80569858 + AluJ/FLAM SINE Alu 2 100 -212 2527 60 0 3 chr15 20810695 20810993 -80569528 - AluY SINE Alu -14 297 1 679 228 98 23 chr15 20811058 20811273 -80569248 + PABL_B-int LTR ERV1 201 431 -4505 531 187 123 68 chr15 20811266 20811485 -80569036 + PABL_B-int LTR ERV1 546 776 -4160 * 1267 225 129 42 chr15 20811667 20811876 -80568645 + MER39 LTR ERV1 288 477 -230 1733 160 3 31 chr15 20811876 20812194 -80568327 + AluJb SINE Alu 1 309 -3 1267 225 129 42 chr15 20812194 20812370 -80568151 + MER39 LTR ERV1 477 707 0 327 253 0 0 chr15 20812398 20812477 -80568044 + LTR12-int LTR ERV1 3852 3930 -941 * 1217 184 43 71 chr15 20812451 20812777 -80567744 + LTR12-int LTR ERV1 4565 4881 -55 2203 108 0 0 chr15 20812783 20813078 -80567443 - AluSg SINE Alu -15 295 1 1240 116 0 12 chr15 20813169 20813342 -80567179 - AluSg/x SINE Alu -8 304 134 1872 100 126 0 chr15 20813342 20813613 -80566908 - AluSx SINE Alu -7 305 1 1085 173 42 35 chr15 20813623 20813883 -80566638 - AluSx SINE Alu 0 312 51 1566 118 122 4 chr15 20814688 20814943 -80565578 + LTR12 LTR ERV1 1 285 -429 247 280 13 0 chr15 20814946 20815021 -80565500 + LTR30 LTR ERV1 548 623 -99 656 125 22 125 chr15 20815022 20815158 -80565363 + LTR12 LTR ERV1 359 480 -234 884 206 18 6 chr15 20815318 20815483 -80565038 - AluJb SINE Alu -4 308 142 255 161 0 0 chr15 20815499 20815555 -80564966 + (TCTCTG)n Simple_repeat Simple_repeat 3 58 0 2194 93 38 3 chr15 20815637 20815928 -80564593 + AluSg SINE Alu 1 301 -9 2463 141 43 56 chr15 20816354 20816471 -80564050 + MER31A LTR ERV1 1 118 -367 2261 96 0 7 chr15 20816471 20816784 -80563737 + AluSg SINE Alu 1 310 0 2463 141 43 56 chr15 20816784 20817150 -80563371 + MER31A LTR ERV1 118 478 -7 515 274 20 26 chr15 20817172 20817325 -80563196 + MER31A-int LTR ERV1 15 166 -4770 791 124 20 92 chr15 20817329 20817482 -80563039 - FLAM_C SINE Alu 0 143 2 366 241 71 27 chr15 20817529 20817641 -80562880 + MER31A-int LTR ERV1 172 288 -4648 3135 159 32 32 chr15 20817641 20818206 -80562315 + MER34B LTR ERV1 1 565 0 2074 122 0 17 chr15 20818209 20818535 -80561986 - AluSx SINE Alu 0 312 1 939 232 22 130 chr15 20818615 20818656 -80561865 - MLT1A1 LTR MaLR 0 365 321 2146 123 3 0 chr15 20818656 20818956 -80561565 + AluSx SINE Alu 1 301 -11 939 232 22 130 chr15 20818956 20819323 -80561198 - MLT1A1 LTR MaLR -44 321 1 4781 214 24 76 chr15 20819346 20819620 -80560901 - MLT1A1-int LTR MaLR -20 1715 1428 683 186 59 0 chr15 20819620 20819738 -80560783 + FLAM_A SINE Alu 1 125 -8 4781 214 24 76 chr15 20819738 20820733 -80559788 - MLT1A1-int LTR MaLR -307 1428 512 217 152 22 0 chr15 20821076 20821102 -80559419 + (TAA)n Simple_repeat Simple_repeat 3 32 -17 2182 91 0 11 chr15 20821102 20821387 -80559134 + AluSg SINE Alu 1 282 -28 217 152 22 0 chr15 20821387 20821406 -80559115 + (TAA)n Simple_repeat Simple_repeat 32 49 0 962 146 53 0 chr15 20821411 20821562 -80558959 - FRAM SINE Alu -21 155 1 986 198 53 5 chr15 20821562 20821749 -80558772 - MLT1A1-int LTR MaLR -1192 543 348 321 319 64 29 chr15 20821749 20821953 -80558568 + PABL_B LTR ERV1 1 211 -456 773 203 38 55 chr15 20823041 20823278 -80557243 + PABL_B LTR ERV1 369 601 -66 1992 153 38 3 chr15 20823302 20823643 -80556878 - MLT1A1-int LTR MaLR -1382 353 1 549 197 21 42 chr15 20823643 20823785 -80556736 - MLT1A1 LTR MaLR 0 365 227 2193 112 0 0 chr15 20823833 20824119 -80556402 - AluSg SINE Alu -24 286 1 775 111 0 0 chr15 20824147 20824246 -80556275 + AluJ/FLAM SINE Alu 2 100 -212 2437 67 3 3 chr15 20824278 20824575 -80555946 - AluY SINE Alu -14 297 1 679 228 98 23 chr15 20824640 20824855 -80555666 + MER31A-int LTR ERV1 201 431 -4505 500 192 123 68 chr15 20824848 20825067 -80555454 + MER31A-int LTR ERV1 546 776 -4160 * 1283 223 129 42 chr15 20825249 20825458 -80555063 + MER39 LTR ERV1 288 477 -230 1733 160 3 31 chr15 20825458 20825776 -80554745 + AluJb SINE Alu 1 309 -3 1283 223 129 42 chr15 20825776 20825952 -80554569 + MER39 LTR ERV1 477 707 0 327 253 0 0 chr15 20825980 20826059 -80554462 + LTR48-int LTR ERV1 3852 3930 -941 * 1217 184 43 71 chr15 20826033 20826359 -80554162 + LTR48-int LTR ERV1 4565 4881 -55 2222 108 0 0 chr15 20826365 20826662 -80553859 - AluSg SINE Alu -13 297 1 897 106 0 15 chr15 20826753 20826885 -80553636 - AluSg/x SINE Alu -7 303 174 186 0 28 56 chr15 20828062 20828098 -80552423 + (TA)n Simple_repeat Simple_repeat 2 36 0 1137 112 12 0 chr15 20828101 20828262 -80552259 - AluSg/x SINE Alu -13 297 135 252 0 0 0 chr15 20828262 20828290 -80552231 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 420 20 0 0 chr15 20828289 20828338 -80552183 + (GA)n Simple_repeat Simple_repeat 2 50 0 831 202 98 38 chr15 20828338 20828521 -80552000 - AluJo SINE Alu -34 278 85 1189 178 230 57 chr15 20828643 20828832 -80551689 + LTR48 LTR ERV1 1 156 -631 2269 109 0 0 chr15 20828832 20829134 -80551387 + AluSg SINE Alu 1 302 -8 1189 178 230 57 chr15 20829134 20829349 -80551172 + LTR48 LTR ERV1 156 475 -312 904 247 63 28 chr15 20829349 20829604 -80550917 + LTR48B LTR ERV1 381 644 0 216 309 147 0 chr15 20829656 20829724 -80550797 - L2 LINE L2 -44 3269 3192 2576 39 3 7 chr15 20829923 20830232 -80550289 - AluY SINE Alu -3 308 1 269 210 16 0 chr15 20830384 20830446 -80550075 - LTR30 LTR ERV1 -104 618 556 410 172 49 93 chr15 20830446 20830640 -80549881 - LTR12 LTR ERV1 -425 289 44 241 163 0 0 chr15 20830640 20830683 -80549838 - LTR30 LTR ERV1 -679 43 1 3311 205 35 42 chr15 20830683 20831662 -80548859 + L1MA8 LINE L1 2235 6313 -47 2056 270 45 26 chr15 20831731 20832600 -80547921 + L1MEc LINE L1 2317 3201 -3014 629 206 0 0 chr15 20834325 20834432 -80546089 - FAM SINE Alu -21 164 58 889 77 0 0 chr15 20834480 20834597 -80545924 - AluY SINE Alu 0 311 195 528 159 86 73 chr15 20834691 20834842 -80545679 + HsTC2 DNA Tc2 1238 1566 -332 2409 197 36 60 chr15 20835036 20835174 -80545347 + MER7C DNA MER2_type 3 143 -2885 2353 95 0 0 chr15 20835174 20835469 -80545052 - AluSg SINE Alu -15 295 1 2409 197 36 60 chr15 20835469 20835516 -80545005 + MER7C DNA MER2_type 143 190 -2838 2435 65 0 7 chr15 20835516 20835822 -80544699 - AluY SINE Alu -7 304 1 2409 197 36 60 chr15 20835822 20836249 -80544272 + MER7C DNA MER2_type 190 601 -1 302 333 30 0 chr15 20836560 20836725 -80543796 + L1MEc LINE L1 90 259 -6137 1762 166 14 0 chr15 20837172 20837468 -80543053 + MER47A DNA MER2_type 23 322 -44 311 144 0 178 chr15 20837469 20837559 -80542962 + Tigger5 DNA MER2_type 2248 2323 0 241 289 70 30 chr15 20839968 20840169 -80540352 + L1M4 LINE L1 4889 5097 -1049 191 370 10 10 chr15 20840290 20840390 -80540131 + MIR SINE MIR 141 240 -22 266 315 80 24 chr15 20840443 20840656 -80539865 - HsTC2 DNA Tc2 -20 1878 1654 2435 67 0 10 chr15 20840660 20840958 -80539563 + AluY SINE Alu 6 300 -11 1375 133 0 0 chr15 20840959 20841147 -80539374 + AluSg/x SINE Alu 113 300 -12 504 258 102 27 chr15 20841156 20841381 -80539140 - HsTC2 DNA Tc2 -246 1652 1235 2256 211 33 7 chr15 20841473 20841894 -80538627 - MSTB1 LTR MaLR 0 432 1 1376 200 28 39 chr15 20842034 20842319 -80538202 - AluJo SINE Alu -30 282 1 2054 94 63 23 chr15 20842346 20842645 -80537876 - AluSp SINE Alu -2 311 1 3208 239 97 3 chr15 20842769 20843533 -80536988 - MER54A LTR ERVL -7 894 59 2301 101 3 0 chr15 20844011 20844309 -80536212 - AluSp SINE Alu -14 299 1 2304 95 0 25 chr15 20845087 20845404 -80535117 - AluSc SINE Alu 0 309 1 2104 176 72 17 chr15 20846271 20846675 -80533846 - MSTB LTR MaLR 0 426 1 685 48 0 0 chr15 20846698 20846782 -80533739 - MSTB LTR MaLR -342 84 1 2817 221 12 12 chr15 20847284 20847325 -80533196 + L1MA7 LINE L1 5270 5310 -981 2239 93 27 0 chr15 20847325 20847625 -80532896 + AluSx SINE Alu 1 308 -4 1633 194 11 0 chr15 20847635 20847919 -80532602 + AluJo SINE Alu 1 287 -25 2817 221 12 12 chr15 20847919 20848535 -80531986 + L1MA7 LINE L1 5318 5938 -353 366 342 76 11 chr15 20848539 20848723 -80531798 + MLT1E LTR MaLR 68 263 -330 701 185 15 0 chr15 20848786 20848921 -80531600 - L1MCa LINE L1 -4210 2216 2080 246 226 0 0 chr15 20848966 20849019 -80531502 - L1MCa LINE L1 -4300 2126 2074 233 310 69 45 chr15 20849234 20849524 -80530997 + L2 LINE L2 2914 3210 -62 551 231 111 53 chr15 20850044 20850269 -80530252 + HsTC2 DNA Tc2 1239 1652 -246 488 329 78 13 chr15 20850648 20850879 -80529642 + L1MEc LINE L1 62 307 -6089 216 0 0 0 chr15 20851118 20851142 -80529379 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1970 141 3 0 chr15 20851215 20851498 -80529023 - AluSg SINE Alu -25 285 2 888 148 8 0 chr15 20851502 20851630 -80528891 - AluSq/x SINE Alu -179 133 5 4315 135 0 5 chr15 20852263 20852892 -80527629 - L1PA15 LINE L1 -7 6158 5533 4202 245 41 38 chr15 20852895 20854242 -80526279 - L1PA13 LINE L1 -5378 1409 1 198 0 0 0 chr15 20855975 20855997 -80524524 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 383 280 84 84 chr15 20856128 20856374 -80524147 + L1M4 LINE L1 4754 5002 -1144 2000 125 18 0 chr15 20856374 20856653 -80523868 - AluSg SINE Alu -26 284 1 383 280 84 84 chr15 20856653 20856749 -80523772 + L1M4 LINE L1 5001 5096 -1050 358 290 172 11 chr15 20856784 20856970 -80523551 + MIR SINE MIR 7 222 -40 346 168 106 9 chr15 20857032 20857145 -80523376 - HsTC2 DNA Tc2 -16 1882 1759 902 123 71 0 chr15 20857170 20857325 -80523196 + L1M2 LINE L1 5508 5673 -618 744 278 68 23 chr15 20857327 20857636 -80522885 - HsTC2 DNA Tc2 -173 1725 1227 835 224 0 0 chr15 20857998 20858173 -80522348 + AluJb SINE Alu 132 306 0 601 199 72 48 chr15 20859479 20859645 -80520876 + L1MC3 LINE L1 4616 4785 -1361 553 303 116 26 chr15 20859659 20860060 -80520461 + MER52A LTR ERV1 29 643 -635 2225 139 88 25 chr15 20860060 20860456 -80520065 + LTR12 LTR ERV1 43 463 -251 1050 296 6 66 chr15 20860456 20860973 -80519548 + MER52A LTR ERV1 464 949 -806 345 244 22 0 chr15 20860978 20861068 -80519453 + MER52A LTR ERV1 1094 1185 -570 1682 230 6 11 chr15 20861091 20861439 -80519082 + MER52A LTR ERV1 1410 1755 0 1438 252 68 18 chr15 20861439 20862078 -80518443 + L1MC3 LINE L1 4782 5452 -722 2138 133 7 0 chr15 20862079 20862381 -80518140 + AluSx SINE Alu 1 304 -8 5631 230 77 40 chr15 20862394 20864093 -80516428 + L1MC3 LINE L1 5858 7632 -153 2087 117 0 3 chr15 20864093 20864425 -80516096 + AluSx SINE Alu 1 331 0 5631 230 77 40 chr15 20864425 20864579 -80515942 + L1MC3 LINE L1 7632 7779 -6 509 248 165 0 chr15 20865016 20865149 -80515372 + MER41E LTR ERV1 23 177 -335 362 193 118 8 chr15 20865154 20865173 -80515348 - L1MCa LINE L1 -4374 2052 2036 183 42 0 0 chr15 20865173 20865197 -80515324 + (CA)n Simple_repeat Simple_repeat 2 25 0 362 193 118 8 chr15 20865197 20865296 -80515225 - L1MCa LINE L1 -4390 2036 1921 1401 138 45 20 chr15 20865296 20865547 -80514974 + L1MEc LINE L1 2210 2383 -4043 1566 187 18 0 chr15 20865547 20865856 -80514665 + AluSx SINE Alu 1 314 0 1401 138 45 20 chr15 20865856 20865949 -80514572 + L1MEc LINE L1 2383 2472 -3954 249 216 0 0 chr15 20865936 20865987 -80514534 + L1ME LINE L1 5410 5460 -706 * 441 193 59 8 chr15 20865985 20866104 -80514417 + L1MA8 LINE L1 6163 6287 -4 1111 108 0 7 chr15 20866160 20866308 -80514213 + AluSg/x SINE Alu 70 216 -94 1818 279 27 43 chr15 20866309 20866676 -80513845 + L1M4 LINE L1 2304 2675 -3471 2931 82 3 0 chr15 20866676 20867030 -80513491 - THE1A LTR MaLR 0 355 1 1818 279 27 43 chr15 20867030 20867398 -80513123 + L1M4 LINE L1 2675 3027 -3119 2306 62 41 0 chr15 20867398 20867690 -80512831 + AluSg SINE Alu 3 306 -4 1818 279 27 43 chr15 20867690 20867795 -80512726 + L1M4 LINE L1 3027 3132 -3014 2352 84 0 10 chr15 20868629 20868940 -80511581 - AluY SINE Alu -2 309 2 349 206 113 64 chr15 20869933 20870074 -80510447 + HsTC2 DNA Tc2 1231 1554 -344 2292 75 7 0 chr15 20870086 20870366 -80510155 - AluSg SINE Alu -28 282 1 2511 170 38 71 chr15 20870604 20870722 -80509799 + MER7C DNA MER2_type 13 133 -2895 1845 153 0 59 chr15 20870722 20871042 -80509479 - AluSx SINE Alu -11 301 1 2511 170 38 71 chr15 20871042 20871231 -80509290 + MER7C DNA MER2_type 133 327 -2701 2345 84 3 0 chr15 20871231 20871527 -80508994 - AluSp SINE Alu -16 297 1 2511 170 38 71 chr15 20871527 20871825 -80508696 + MER7C DNA MER2_type 327 602 0 2365 95 0 0 chr15 20872089 20872383 -80508138 - AluSc SINE Alu -15 294 1 513 268 14 0 chr15 20872440 20872578 -80507943 + L1MEc LINE L1 100 239 -6157 1704 211 28 11 chr15 20872933 20873289 -80507232 + MER47A DNA MER2_type 4 365 -1 1533 201 3 13 chr15 20873304 20873602 -80506919 - AluJo SINE Alu -17 295 1 22 80 0 0 chr15 20875092 20875142 -80505379 + AT_rich Low_complexity Low_complexity 1 50 0 251 267 61 61 chr15 20875383 20875514 -80505007 + MIR SINE MIR 96 226 -36 1040 244 87 31 chr15 20875589 20876047 -80504474 - HsTC2 DNA Tc2 -23 1875 1216 548 263 10 57 chr15 20877148 20877342 -80503179 + MIR3 SINE MIR 15 199 -9 695 239 184 76 chr15 20878478 20878939 -80501582 + MLT2B1 LTR ERVL 2 512 -8 417 123 99 12 chr15 20879151 20879232 -80501289 - MER20B DNA MER1_type -71 712 625 2847 168 238 18 chr15 20879340 20880053 -80500468 + MER52C LTR ERV1 409 1278 0 1356 204 41 44 chr15 20880231 20880618 -80499903 + L1MC4a LINE L1 5288 5680 -688 208 256 26 64 chr15 20881051 20881129 -80499392 - MER5A DNA MER1_type -6 183 109 1948 129 48 3 chr15 20881653 20881963 -80498558 - L1MA6 LINE L1 0 6300 5977 225 94 0 0 chr15 20881967 20881999 -80498522 + (T)n Simple_repeat Simple_repeat 1 32 0 5626 48 5 1 chr15 20883513 20884166 -80496355 + L1PA5 LINE L1 5500 6154 0 338 285 64 121 chr15 20884865 20885114 -80495407 - L2 LINE L2 -6 3266 3032 283 281 0 0 chr15 20885131 20885195 -80495326 + L2 LINE L2 3201 3264 -8 25 0 0 0 chr15 20885310 20885335 -80495186 + AT_rich Low_complexity Low_complexity 1 25 0 1182 165 89 8 chr15 20885784 20886020 -80494501 - AluJb SINE Alu -18 294 40 756 190 69 6 chr15 20886038 20886212 -80494309 - L1M4 LINE L1 -733 5441 5257 383 257 16 82 chr15 20886223 20886406 -80494115 - L1MA10 LINE L1 -7 6327 6157 398 254 127 5 chr15 20886412 20886609 -80493912 - L1M4 LINE L1 -870 5276 5056 1698 176 28 3 chr15 20887505 20887795 -80492726 - AluJo SINE Alu -15 297 1 21 36 0 0 chr15 20887872 20887900 -80492621 + AT_rich Low_complexity Low_complexity 1 28 0 2307 113 0 0 chr15 20887916 20888217 -80492304 - AluSg SINE Alu -9 301 1 327 268 113 12 chr15 20888248 20888416 -80492105 + L1MC4a LINE L1 5706 5890 -1918 21 36 0 0 chr15 20888617 20888645 -80491876 + AT_rich Low_complexity Low_complexity 1 28 0 484 141 0 81 chr15 20891268 20891367 -80489154 - FLAM_A SINE Alu -12 130 40 1514 193 10 3 chr15 20891485 20891780 -80488741 - AluJo SINE Alu -15 297 1 677 153 85 25 chr15 20892107 20892225 -80488296 + FLAM_C SINE Alu 1 125 -18 839 143 54 0 chr15 20892451 20892598 -80487923 - L1MB7 LINE L1 -334 5850 5696 1231 113 0 0 chr15 20892747 20892907 -80487614 + AluSx SINE Alu 3 162 -150 2070 116 0 7 chr15 20893054 20893339 -80487182 - AluSx SINE Alu -29 283 1 770 202 104 22 chr15 20893349 20893532 -80486989 + Tigger3(Golem) DNA MER2_type 2821 3018 -11 2198 91 0 39 chr15 20893543 20893850 -80486671 - AluSq SINE Alu -18 295 1 786 102 68 0 chr15 20894768 20894886 -80485635 - AluSx SINE Alu -9 303 178 848 117 0 39 chr15 20894886 20895014 -80485507 - AluSx SINE Alu -189 123 1 450 248 44 9 chr15 20895248 20895361 -80485160 + MER106A DNA MER1_type 1 117 -119 1993 115 17 3 chr15 20897508 20897796 -80482725 + AluSq SINE Alu 1 292 -21 1848 122 83 17 chr15 20898884 20899172 -80481349 - AluSp SINE Alu -6 307 1 2054 130 10 0 chr15 20899832 20900132 -80480389 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr15 20900140 20900161 -80480360 + AT_rich Low_complexity Low_complexity 1 21 0 785 285 112 82 chr15 20900631 20901302 -80479219 - MER21B LTR ERV1 -149 714 24 2199 100 0 7 chr15 20901936 20902235 -80478286 + AluSx SINE Alu 3 299 -13 1089 165 0 0 chr15 20902235 20902405 -80478116 + AluSg/x SINE Alu 134 303 -9 26 0 0 0 chr15 20902896 20902922 -80477599 + AT_rich Low_complexity Low_complexity 1 26 0 2117 116 3 0 chr15 20903711 20904005 -80476516 - AluSq SINE Alu -18 295 1 649 259 27 22 chr15 20904389 20904574 -80475947 + MER58A DNA MER1_type 33 218 -6 1943 131 3 3 chr15 20904874 20905165 -80475356 + AluSx SINE Alu 1 291 -21 36 23 0 0 chr15 20906099 20906142 -80474379 + AT_rich Low_complexity Low_complexity 1 43 0 686 96 113 17 chr15 20906198 20906313 -80474208 - MER85 DNA T2_type -13 126 1 501 275 10 28 chr15 20906313 20906500 -80474021 - L1MB7 LINE L1 -3 6181 5994 2159 117 0 0 chr15 20906551 20906849 -80473672 + AluSx SINE Alu 1 298 -14 1533 221 45 40 chr15 20906980 20907406 -80473115 + MLT1C LTR MaLR 40 467 0 1456 228 115 54 chr15 20907410 20907752 -80472769 + L1MEc LINE L1 2146 2466 -3749 2139 103 0 7 chr15 20907752 20908044 -80472477 + AluSg1 SINE Alu 3 292 -17 1456 228 115 54 chr15 20908044 20908197 -80472324 + L1MEc LINE L1 2466 2608 -3607 14331 44 7 2 chr15 20908197 20910750 -80469771 + L1PA5 LINE L1 3598 6154 0 1456 228 115 54 chr15 20910750 20910943 -80469578 + L1MEc LINE L1 2608 2840 -3375 249 314 78 11 chr15 20910958 20911149 -80469372 + L1MB5 LINE L1 8 211 -6331 1328 117 254 0 chr15 20911490 20911730 -80468791 + AluSx SINE Alu 1 301 -1 3920 223 77 26 chr15 20911731 20913166 -80467355 + L1M4 LINE L1 818 2415 -4231 22 35 0 0 chr15 20913403 20913432 -80467089 + AT_rich Low_complexity Low_complexity 1 29 0 4351 231 77 18 chr15 20913765 20915474 -80465047 + L1M4 LINE L1 2404 4217 -2427 887 239 133 0 chr15 20915499 20915808 -80464713 + L1M4 LINE L1 5440 5789 -855 900 188 30 61 chr15 20915814 20915905 -80464616 + L1MC1 LINE L1 6015 6107 -226 1771 159 17 17 chr15 20915905 20916200 -80464321 + AluSx SINE Alu 1 295 -17 900 188 30 61 chr15 20916200 20916305 -80464216 + L1MC1 LINE L1 6107 6205 -128 1227 166 97 62 chr15 20916307 20916596 -80463925 + MLT1B LTR MaLR 92 390 0 2683 252 41 78 chr15 20916693 20917148 -80463373 + L1MB5 LINE L1 353 823 -5719 1945 116 39 11 chr15 20917148 20917432 -80463089 - AluSq SINE Alu -21 292 1 2683 252 41 78 chr15 20917432 20918163 -80462358 + L1MB5 LINE L1 823 1496 -5046 1578 215 69 23 chr15 20918168 20920309 -80460212 + L1MB5 LINE L1 4296 6672 0 2380 229 47 64 chr15 20920309 20921285 -80459236 + L1M4 LINE L1 2684 3642 -3002 333 329 77 41 chr15 20921341 20921587 -80458934 - L1M4 LINE L1 -6275 267 13 * 3259 228 66 48 chr15 20921581 20922708 -80457813 - L1MCb LINE L1 -4759 1805 700 7390 32 16 0 chr15 20922708 20923214 -80457307 - L1PA3 LINE L1 0 6155 5659 180 0 0 0 chr15 20923214 20923234 -80457287 + (TA)n Simple_repeat Simple_repeat 1 20 0 7390 32 16 0 chr15 20923234 20924081 -80456440 - L1PA3 LINE L1 -496 5659 4782 3259 228 66 48 chr15 20924081 20924125 -80456396 - L1MCb LINE L1 -5864 700 658 2284 44 44 0 chr15 20924125 20924430 -80456091 + AluY SINE Alu 1 317 0 3259 228 66 48 chr15 20924430 20925026 -80455495 - L1MCb LINE L1 -5906 658 14 3917 241 69 45 chr15 20925036 20926676 -80453845 - L1M4c LINE L1 -2433 3949 2243 198 26 77 0 chr15 20926676 20926715 -80453806 + (TA)n Simple_repeat Simple_repeat 1 42 0 3917 241 69 45 chr15 20926715 20926891 -80453630 - L1M4c LINE L1 -4139 2243 2073 1877 156 33 3 chr15 20926926 20927291 -80453230 - L1MA9 LINE L1 0 6376 6001 4818 209 55 15 chr15 20927308 20929162 -80451359 - L1MA9 LINE L1 -482 5894 3952 3649 32 60 2 chr15 20929162 20929625 -80450896 - L1PA5 LINE L1 -3 6151 5662 2845 38 4 0 chr15 20929625 20930073 -80450448 - L1PA4 LINE L1 -2 6153 5571 2480 42 3 0 chr15 20930069 20930549 -80449972 + L1PA4 LINE L1 5088 5568 -586 * 6265 222 80 43 chr15 20930540 20932156 -80448365 - L1MA9 LINE L1 -2236 3974 2419 396 0 0 0 chr15 20932156 20932200 -80448321 + (TG)n Simple_repeat Simple_repeat 1 44 0 6265 222 80 43 chr15 20932200 20934028 -80446493 - L1MA9 LINE L1 -3791 2419 729 1948 146 133 21 chr15 20934028 20934413 -80446108 - MSTA LTR MaLR 0 428 1 6265 222 80 43 chr15 20934413 20935170 -80445351 - L1MA9 LINE L1 -5481 729 1 5114 239 102 13 chr15 20935223 20936520 -80444001 - L1M4c LINE L1 -4491 2155 975 279 0 0 0 chr15 20936520 20936551 -80443970 + (TG)n Simple_repeat Simple_repeat 2 32 0 5114 239 102 13 chr15 20936551 20936649 -80443872 - L1M4c LINE L1 -5671 975 887 2284 76 35 0 chr15 20936649 20936938 -80443583 - AluSg SINE Alu -11 299 1 5114 239 102 13 chr15 20936938 20937517 -80443004 - L1M4c LINE L1 -5759 887 13 2344 263 68 26 chr15 20937532 20937980 -80442541 - L1M4 LINE L1 -2291 4666 4238 1920 160 0 0 chr15 20937980 20938273 -80442248 - AluJb SINE Alu -19 293 1 2344 263 68 26 chr15 20938273 20938902 -80441619 - L1M4 LINE L1 -2719 4238 3544 552 15 0 0 chr15 20940357 20940422 -80440099 + (CA)n Simple_repeat Simple_repeat 2 66 0 31 48 0 16 chr15 20940958 20940999 -80439522 + AT_rich Low_complexity Low_complexity 1 42 -20 2506 38 0 0 chr15 20940999 20941291 -80439230 - AluY SINE Alu -19 292 1 31 48 0 16 chr15 20941291 20941312 -80439209 + AT_rich Low_complexity Low_complexity 42 62 0 280 206 76 0 chr15 20941576 20941707 -80438814 + (TA)n Simple_repeat Simple_repeat 2 142 0 497 266 14 0 chr15 20943084 20943227 -80437294 - L1ME3A LINE L1 0 6170 6026 2189 103 0 0 chr15 20944481 20944773 -80435748 + AluSg SINE Alu 1 292 -18 288 0 0 0 chr15 20946465 20946497 -80434024 + (CA)n Simple_repeat Simple_repeat 2 33 0 522 315 101 73 chr15 20946497 20947279 -80433242 + L1M4 LINE L1 2152 2955 -3191 435 249 67 31 chr15 20947332 20947659 -80432862 + L1M4 LINE L1 2946 3282 -2864 613 247 44 6 chr15 20947664 20947846 -80432675 - L1M4 LINE L1 -3435 3522 3334 1129 228 134 39 chr15 20947862 20947942 -80432579 + MSTD LTR MaLR 21 92 -304 2354 57 0 0 chr15 20947942 20948239 -80432282 + AluY SINE Alu 1 297 -14 1129 228 134 39 chr15 20948239 20948502 -80432019 + MSTD LTR MaLR 92 396 0 374 148 0 0 chr15 20948527 20948588 -80431933 - L1M4 LINE L1 -1199 4947 4887 2186 260 56 47 chr15 20949022 20950477 -80430044 - L1M4 LINE L1 -3943 3016 1556 1493 141 5 0 chr15 20950479 20950699 -80429822 - AluSg/x SINE Alu -18 294 74 900 173 0 0 chr15 20950704 20950854 -80429667 - L1M4 LINE L1 -457 5717 5568 198 0 0 0 chr15 20953619 20953641 -80426880 + (A)n Simple_repeat Simple_repeat 1 22 0 3024 96 49 11 chr15 20954761 20955209 -80425312 + MER4C LTR ERV1 1 465 0 22 0 0 0 chr15 20955400 20955422 -80425099 + AT_rich Low_complexity Low_complexity 1 22 0 2185 97 0 7 chr15 20956685 20956985 -80423536 + AluSg SINE Alu 1 298 -12 2616 249 25 18 chr15 20958687 20959565 -80420956 - L1MCb LINE L1 -3012 3552 2669 833 225 55 22 chr15 20959572 20959754 -80420767 - AluJo SINE Alu -10 302 115 594 198 94 19 chr15 20959754 20959968 -80420553 - L1MCb LINE L1 -3952 2612 2415 1347 105 0 5 chr15 20959968 20960158 -80420363 + AluSp SINE Alu 125 313 0 2244 81 0 31 chr15 20960197 20960517 -80420004 - AluY SINE Alu -1 310 1 727 155 13 97 chr15 20960517 20960672 -80419849 - FLAM_C SINE Alu 0 143 2 517 247 37 6 chr15 20960673 20960835 -80419686 - L1MCb LINE L1 -4135 2429 2263 207 0 0 0 chr15 20960853 20960876 -80419645 + (TA)n Simple_repeat Simple_repeat 1 23 0 39541 67 5 5 chr15 20960877 20967010 -80413511 - L1PA5 LINE L1 -14 6140 11 1961 248 49 45 chr15 20967053 20968407 -80412114 - L1MCb LINE L1 -4407 2157 704 6089 116 48 62 chr15 20968867 20970028 -80410493 + pTR5 LTR ERV1 743 2019 -419 369 248 44 44 chr15 20970028 20970141 -80410380 + LTR30 LTR ERV1 544 721 -73 1546 78 5 5 chr15 20970141 20970359 -80410162 + pTR5 LTR ERV1 177 394 -2044 5085 118 25 19 chr15 21047778 21048753 -80331768 + MER11C LTR ERVK 1 1071 0 310 305 121 55 chr15 21052641 21052913 -80327608 - L1M4 LINE L1 -2725 3421 3132 33 109 0 0 chr15 21053551 21053689 -80326832 + AT_rich Low_complexity Low_complexity 1 138 0 223 368 158 18 chr15 21053827 21053998 -80326523 - MIR SINE MIR -13 249 55 276 333 67 8 chr15 21054659 21054779 -80325742 - L3 LINE CR1 -95 1482 1356 2123 166 68 7 chr15 21054844 21055253 -80325268 - Tigger2a DNA MER2_type 0 434 1 2065 95 0 27 chr15 21055775 21056070 -80324451 - AluSc SINE Alu -4 305 19 1282 217 50 7 chr15 21057159 21057440 -80323081 + AluJo SINE Alu 1 293 -19 2163 106 10 0 chr15 21057773 21058065 -80322456 + AluSp SINE Alu 1 295 -18 301 224 0 0 chr15 21063480 21063538 -80316983 + L1MC4 LINE L1 6648 6705 -1337 269 324 52 7 chr15 21064590 21064726 -80315795 - L1ME LINE L1 -395 5775 5634 2186 203 20 0 chr15 21064795 21065204 -80315317 - MER47B DNA MER2_type 0 418 2 516 231 31 7 chr15 21065210 21065372 -80315149 - L1P4 LINE L1 -709 5459 5294 1397 284 122 38 chr15 21065387 21066637 -80313884 - L1ME LINE L1 -958 5188 3835 11135 235 68 33 chr15 21066671 21072261 -80308260 - L1MC1 LINE L1 -45 8135 2393 1228 193 0 0 chr15 21072261 21072479 -80308042 - AluSg/x SINE Alu -8 302 85 541 245 35 8 chr15 21072479 21072648 -80307873 - L1MC1 LINE L1 -4221 2343 2192 2784 221 78 64 chr15 21072681 21074376 -80306145 - L1MC1 LINE L1 -4851 1194 1 235 236 14 101 chr15 21074359 21074453 -80306068 - L1M4 LINE L1 -2295 3851 3773 * 2048 119 0 26 chr15 21074453 21074756 -80305765 + AluSx SINE Alu 1 295 -17 235 236 14 101 chr15 21074756 21074809 -80305712 - L1M4 LINE L1 -2373 3773 3717 414 327 49 27 chr15 21074903 21075126 -80305395 - L1M4 LINE L1 -2576 3570 3343 264 285 83 21 chr15 21075735 21075879 -80304642 - L2 LINE L2 -57 3256 3104 1644 226 48 20 chr15 21076184 21076639 -80303882 + MER110A LTR ERV1 1 468 0 540 327 38 8 chr15 21078754 21079020 -80301501 + MER110A-int LTR ERV1 2090 2363 -4438 5499 273 81 78 chr15 21079230 21082382 -80298139 + MER110A-int LTR ERV1 171 3330 -1317 2926 246 88 39 chr15 21082427 21083420 -80297101 + MER110A-int LTR ERV1 3455 4495 -152 1363 213 106 24 chr15 21083480 21083903 -80296618 + MER110A LTR ERV1 5 462 -6 306 323 60 0 chr15 21084422 21084555 -80295966 + MIR SINE MIR 101 241 -21 200 331 66 33 chr15 21084886 21085067 -80295454 + MIR SINE MIR 62 248 -14 1696 155 37 10 chr15 21085575 21085872 -80294649 + MER2 DNA MER2_type 39 343 -2 255 152 0 0 chr15 21085875 21085921 -80294600 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 430 253 21 0 chr15 21088205 21088300 -80292221 + LTR25 LTR ERV1 260 356 -438 229 270 0 90 chr15 21088303 21088403 -80292118 + MER61E LTR ERV1 99 189 -380 * 244 213 0 49 chr15 21088380 21088441 -80292080 + MER61E LTR ERV1 117 174 -395 1018 128 27 37 chr15 21088482 21088670 -80291851 + MER61E LTR ERV1 341 526 -43 21 0 0 0 chr15 21089372 21089393 -80291128 + AT_rich Low_complexity Low_complexity 1 21 0 195 352 14 14 chr15 21089473 21089544 -80290977 + MIR SINE MIR 9 79 -183 214 258 32 32 chr15 21089594 21089687 -80290834 - MIR SINE MIR -30 232 140 2129 120 0 19 chr15 21089772 21090080 -80290441 - AluSx SINE Alu -10 302 1 524 259 68 5 chr15 21090481 21090701 -80289820 - L1MEc LINE L1 -4138 2258 2025 403 156 0 0 chr15 21090729 21090793 -80289728 + AluSg/x SINE Alu 217 280 -20 441 0 0 0 chr15 21090793 21090842 -80289679 + (TA)n Simple_repeat Simple_repeat 1 49 0 2748 269 138 25 chr15 21090918 21092362 -80288159 + L1ME2 LINE L1 2079 3744 -2471 14170 134 85 11 chr15 21092362 21094889 -80285632 + Tigger2 DNA MER2_type 4 2718 0 2748 269 138 25 chr15 21094889 21095354 -80285167 + L1ME2 LINE L1 3744 4155 -2060 234 172 140 11 chr15 21095390 21095483 -80285038 + L1ME2 LINE L1 4397 4501 -1714 1228 262 149 26 chr15 21095547 21096204 -80284317 + L1ME2 LINE L1 4515 5252 -963 1161 172 13 40 chr15 21096208 21096435 -80284086 + AluJo SINE Alu 87 307 -5 592 164 35 0 chr15 21096438 21096554 -80283967 + L1MB5 LINE L1 5989 6108 -66 233 116 0 23 chr15 21096688 21096731 -80283790 + (GGAAA)n Simple_repeat Simple_repeat 3 44 0 6149 213 46 80 chr15 21096903 21099025 -80281496 + L1MC4a LINE L1 5755 7803 -5 2018 244 148 16 chr15 21099027 21099769 -80280752 + L1ME2 LINE L1 5381 6220 -13 24 0 0 0 chr15 21099835 21099859 -80280662 + AT_rich Low_complexity Low_complexity 1 24 0 261 307 74 48 chr15 21100591 21100900 -80279621 + L1MC/D LINE L1 3508 3824 -2322 701 228 73 6 chr15 21101264 21101528 -80278993 + MER110 LTR ERV1 166 491 0 180 0 0 0 chr15 21101767 21101787 -80278734 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 244 243 27 54 chr15 21101875 21101986 -80278535 + L1MC/D LINE L1 4496 4603 -1543 523 271 92 48 chr15 21102511 21102847 -80277674 + L1MC/D LINE L1 5354 5704 -2104 26 0 0 0 chr15 21103167 21103193 -80277328 + AT_rich Low_complexity Low_complexity 1 26 0 291 114 0 0 chr15 21104405 21104449 -80276072 + (A)n Simple_repeat Simple_repeat 1 44 0 202 371 21 7 chr15 21104764 21104904 -80275617 - L2 LINE L2 -5 3308 3167 261 0 0 0 chr15 21105536 21105565 -80274956 + (CA)n Simple_repeat Simple_repeat 2 30 0 2293 192 52 18 chr15 21106960 21107496 -80273025 + MER54A LTR ERVL 147 901 0 2014 108 3 0 chr15 21107813 21108099 -80272422 + AluSx SINE Alu 2 288 -24 373 115 0 0 chr15 21108115 21108167 -80272354 - MER66B LTR ERV1 -140 346 295 2458 260 99 19 chr15 21108363 21108730 -80271791 - L1MEc LINE L1 -2820 3395 3059 1704 163 0 7 chr15 21108730 21109024 -80271497 - AluJb SINE Alu -20 292 1 2458 260 99 19 chr15 21109024 21109274 -80271247 - L1MEc LINE L1 -3156 3059 2831 270 116 0 0 chr15 21109274 21109317 -80271204 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 2458 260 99 19 chr15 21109317 21110014 -80270507 - L1MEc LINE L1 -3384 2831 2005 1142 188 4 83 chr15 21119094 21119248 -80261273 + MER2 DNA MER2_type 91 215 -130 2217 125 0 0 chr15 21119248 21119560 -80260961 + AluSx SINE Alu 1 312 0 1142 188 4 83 chr15 21119560 21119681 -80260840 + MER2 DNA MER2_type 215 344 -1 6499 55 4 2 chr15 21119832 21120635 -80259886 + L1PA7 LINE L1 5351 6154 0 204 97 0 0 chr15 21121461 21121492 -80259029 + (TA)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr15 21121731 21121762 -80258759 + AT_rich Low_complexity Low_complexity 1 31 0 2063 128 0 0 chr15 21122428 21122726 -80257795 + AluSx SINE Alu 1 298 -14 22 106 0 0 chr15 21124418 21124503 -80256018 + AT_rich Low_complexity Low_complexity 1 85 0 1879 234 80 54 chr15 21125667 21126351 -80254170 + L1MDb LINE L1 663 1364 -5045 1959 141 14 0 chr15 21126389 21126686 -80253835 - AluSg SINE Alu -9 301 1 203 200 0 0 chr15 21127798 21127833 -80252688 + A-rich Low_complexity Low_complexity 1 35 0 283 247 74 0 chr15 21128027 21128108 -80252413 + LTR57-int LTR ERVL 2090 2176 -3167 297 0 0 0 chr15 21150178 21150211 -80230310 + (TG)n Simple_repeat Simple_repeat 1 33 0 297 131 0 0 chr15 21152787 21152848 -80227673 + (TG)n Simple_repeat Simple_repeat 2 62 0 230 284 0 0 chr15 21155479 21155546 -80224975 + (TG)n Simple_repeat Simple_repeat 2 68 0 318 204 0 0 chr15 21160940 21161048 -80219473 + (TG)n Simple_repeat Simple_repeat 1 108 0 243 0 0 0 chr15 21163731 21163758 -80216763 + (TG)n Simple_repeat Simple_repeat 2 28 0 348 64 0 0 chr15 21169066 21169113 -80211408 + (TG)n Simple_repeat Simple_repeat 2 48 0 566 121 9 0 chr15 21171812 21171928 -80208593 + (TG)n Simple_repeat Simple_repeat 2 118 0 2175 237 62 13 chr15 21172597 21173280 -80207241 + L1M3 LINE L1 4536 5251 -895 1024 231 30 41 chr15 21173296 21173564 -80206957 + AluJb SINE Alu 5 269 -43 703 196 0 5 chr15 21173594 21173809 -80206712 + GA-rich Low_complexity Low_complexity 1 213 0 2251 187 22 11 chr15 21173909 21174037 -80206484 + L1M3 LINE L1 5357 5482 -852 2210 91 0 4 chr15 21174037 21174312 -80206209 + AluSq SINE Alu 1 274 -39 2251 187 22 11 chr15 21174312 21174642 -80205879 + L1M3 LINE L1 5482 5820 -514 2507 134 86 32 chr15 21174678 21174877 -80205644 + L1PA15 LINE L1 5219 5406 -760 1753 151 43 0 chr15 21174877 21175176 -80205345 + AluSx SINE Alu 1 312 0 2507 134 86 32 chr15 21175176 21175502 -80205019 + L1PA15 LINE L1 5406 5766 -400 1953 180 46 55 chr15 21175503 21176044 -80204477 - MLT2A2 LTR ERVL 0 554 1 1198 146 3 3 chr15 21176045 21176383 -80204138 + L1PA15 LINE L1 5756 6145 -20 1052 245 104 41 chr15 21176432 21177561 -80202960 + L1M4 LINE L1 1337 2762 -3884 1075 191 0 38 chr15 21177575 21177785 -80202736 + AluJo SINE Alu 84 285 -27 1687 221 98 119 chr15 21177804 21177936 -80202585 + L1M4 LINE L1 2760 2893 -3751 2522 65 0 0 chr15 21177936 21178230 -80202291 + AluY SINE Alu 1 294 -17 1687 221 98 119 chr15 21178230 21179027 -80201494 + L1M4 LINE L1 2893 3774 -2870 456 328 8 0 chr15 21179027 21179152 -80201369 + FLAM_C SINE Alu 1 126 -7 1687 221 98 119 chr15 21179152 21179586 -80200935 + L1M4 LINE L1 3774 4216 -2428 1454 197 0 67 chr15 21179587 21179887 -80200634 + AluJo SINE Alu 2 281 -31 191 35 0 35 chr15 21179891 21179920 -80200601 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2112 87 72 0 chr15 21180886 21181162 -80199359 - AluSp SINE Alu -17 296 1 22 0 0 0 chr15 21181300 21181322 -80199199 + AT_rich Low_complexity Low_complexity 1 22 0 730 181 0 30 chr15 21181322 21181455 -80199066 + FLAM_A SINE Alu 1 129 -4 63 26 0 0 chr15 21181630 21181707 -80198814 + AT_rich Low_complexity Low_complexity 1 77 0 2070 114 4 0 chr15 21182027 21182307 -80198214 - AluSx SINE Alu -21 291 11 450 0 0 0 chr15 21182576 21182626 -80197895 + (TA)n Simple_repeat Simple_repeat 1 50 0 2461 83 0 16 chr15 21183026 21183339 -80197182 - AluY SINE Alu -3 308 1 915 210 188 15 chr15 21183489 21183761 -80196760 + L1MB7 LINE L1 5582 5900 -284 1768 257 157 15 chr15 21183917 21184769 -80195752 - L1MC4 LINE L1 -3 8039 7067 21 57 0 0 chr15 21185841 21185876 -80194645 + AT_rich Low_complexity Low_complexity 1 35 0 36 62 0 0 chr15 21185998 21186062 -80194459 + AT_rich Low_complexity Low_complexity 1 64 0 232 309 98 4 chr15 21186389 21186625 -80193896 - L1ME LINE L1 -312 5809 5552 24 32 0 0 chr15 21186696 21186727 -80193794 + AT_rich Low_complexity Low_complexity 1 31 0 277 228 18 53 chr15 21186754 21186868 -80193653 - L1ME LINE L1 -883 5420 5311 724 249 41 30 chr15 21187602 21187799 -80192722 + MER58A DNA MER1_type 26 224 0 202 231 88 0 chr15 21188153 21188244 -80192277 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 517 323 25 0 chr15 21189485 21189686 -80190835 + L1ME LINE L1 10 215 -5855 652 250 4 74 chr15 21189699 21189955 -80190566 + L1ME LINE L1 320 557 -5513 415 217 15 152 chr15 21190048 21190246 -80190275 + MER20 DNA MER1_type 44 214 -5 412 254 123 9 chr15 21190253 21190481 -80190040 + L1ME LINE L1 564 817 -5253 1359 173 39 27 chr15 21190527 21190787 -80189734 + AluJo SINE Alu 43 305 -7 586 265 122 67 chr15 21190789 21191503 -80189018 + L1ME LINE L1 857 1609 -4471 1744 117 0 0 chr15 21193458 21193688 -80186833 + AluSg SINE Alu 52 281 -29 2303 257 163 29 chr15 21193712 21194504 -80186017 + L1ME LINE L1 2534 3218 -2862 2462 70 0 3 chr15 21194504 21194806 -80185715 + AluY SINE Alu 1 301 -10 2303 257 163 29 chr15 21194806 21195233 -80185288 + L1ME LINE L1 3218 3586 -2494 1671 143 94 0 chr15 21195233 21195499 -80185022 + AluSq SINE Alu 1 291 -22 2303 257 163 29 chr15 21195499 21196113 -80184408 + L1ME LINE L1 3586 4802 -1278 2070 106 46 13 chr15 21198593 21198896 -80181625 - AluSq SINE Alu 0 313 1 299 231 115 0 chr15 21199183 21199261 -80181260 + MLT1G LTR MaLR 497 583 -7 3868 98 122 5 chr15 21199935 21200525 -80179996 + PABL_A LTR ERV1 1 659 -1 2323 88 0 16 chr15 21202462 21202767 -80177754 - AluSq SINE Alu -13 300 1 229 151 38 0 chr15 21203772 21203825 -80176696 + MER109 Unknown Unknown 936 990 -1442 2324 86 0 0 chr15 21204435 21204726 -80175795 - AluSg SINE Alu -19 291 1 25 31 0 0 chr15 21204777 21204809 -80175712 + AT_rich Low_complexity Low_complexity 1 32 0 479 283 40 35 chr15 21205192 21205390 -80175131 + MER8 DNA MER2_type 1 199 -40 21 36 0 0 chr15 21206248 21206276 -80174245 + AT_rich Low_complexity Low_complexity 1 28 0 201 240 0 0 chr15 21206733 21206808 -80173713 + (TA)n Simple_repeat Simple_repeat 1 75 0 214 402 0 0 chr15 21210661 21210743 -80169778 - L2 LINE L2 -18 3295 3214 22 56 0 0 chr15 21211828 21211864 -80168657 + AT_rich Low_complexity Low_complexity 1 36 0 552 263 111 12 chr15 21212115 21212286 -80168235 + MER5A DNA MER1_type 2 189 0 315 161 0 0 chr15 21212865 21212921 -80167600 + (CA)n Simple_repeat Simple_repeat 2 57 0 1306 153 61 4 chr15 21214150 21214378 -80166143 + AluSg SINE Alu 1 241 -69 332 26 0 0 chr15 21214916 21214954 -80165567 + (CA)n Simple_repeat Simple_repeat 1 38 0 207 0 0 0 chr15 21214953 21214976 -80165545 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 2038 139 14 0 chr15 21215948 21216242 -80164279 - AluSx SINE Alu -12 300 3 1841 108 0 34 chr15 21216332 21216629 -80163892 - AluSx SINE Alu -7 305 19 1338 186 67 22 chr15 21216876 21217145 -80163376 + AluJo SINE Alu 3 283 -29 253 283 22 33 chr15 21217170 21217262 -80163259 - L2 LINE L2 -2 3311 3221 2110 117 0 0 chr15 21218190 21218492 -80162029 + AluSx SINE Alu 1 302 0 2478 68 13 0 chr15 21219045 21219352 -80161169 - AluY SINE Alu 0 311 1 343 159 0 72 chr15 21271088 21271157 -80109364 + MER58A DNA MER1_type 161 224 0 1742 170 11 3 chr15 21271180 21271463 -80109058 - AluSx SINE Alu -27 285 1 1879 146 3 3 chr15 21271597 21271891 -80108630 + AluSx SINE Alu 2 295 -17 2216 102 10 3 chr15 21272443 21272736 -80107785 + AluSg SINE Alu 1 295 -15 2127 148 143 11 chr15 21273091 21273469 -80107052 - MSTA LTR MaLR 0 428 1 2060 130 7 0 chr15 21273569 21273869 -80106652 + AluSc SINE Alu 1 302 -7 209 33 33 0 chr15 21273947 21273977 -80106544 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 827 181 87 0 chr15 21273984 21274133 -80106388 + AluJo SINE Alu 127 288 -24 23 0 0 0 chr15 21274133 21274156 -80106365 + AT_rich Low_complexity Low_complexity 1 23 0 2674 166 58 42 chr15 21274218 21274721 -80105800 - L1MB3 LINE L1 -1 6182 5668 1885 125 0 54 chr15 21274721 21275034 -80105487 - AluSx SINE Alu -16 296 1 2674 166 58 42 chr15 21275034 21275084 -80105437 - L1MB3 LINE L1 -515 5668 5620 663 126 0 0 chr15 21275093 21275180 -80105341 - AluS SINE Alu -225 88 2 1947 226 52 21 chr15 21275187 21275710 -80104811 - MER74B LTR ERVL -82 540 2 2421 166 43 61 chr15 21275713 21276025 -80104496 - L1MB3 LINE L1 -560 5623 5307 192 97 0 0 chr15 21276025 21276056 -80104465 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2021 142 0 0 chr15 21276056 21276339 -80104182 - AluSx SINE Alu -29 283 1 2421 166 43 61 chr15 21276339 21276390 -80104131 - L1MB3 LINE L1 -875 5308 5258 2018 166 0 0 chr15 21276390 21276697 -80103824 - AluSx SINE Alu -5 307 1 2421 166 43 61 chr15 21276697 21277170 -80103351 - L1MB3 LINE L1 -925 5258 4793 240 59 0 0 chr15 21277356 21277390 -80103131 + (TG)n Simple_repeat Simple_repeat 1 34 0 872 196 6 30 chr15 21277412 21277580 -80102941 - MLT2D LTR ERVL -54 360 197 2189 122 16 0 chr15 21277581 21277884 -80102637 - AluSx SINE Alu -4 308 1 12706 182 39 20 chr15 21277885 21278366 -80102155 - ERVL LTR ERVL -303 5461 4991 2147 113 0 3 chr15 21278366 21278685 -80101836 - AluSg SINE Alu 0 310 1 12706 182 39 20 chr15 21278685 21280418 -80100103 - ERVL LTR ERVL -773 4991 3198 2160 138 0 6 chr15 21280418 21280729 -80099792 - AluSx SINE Alu -3 309 1 12706 182 39 20 chr15 21280729 21280854 -80099667 - ERVL LTR ERVL -2566 3198 3077 555 258 67 16 chr15 21280838 21281032 -80099489 - ERVL LTR ERVL -5345 419 216 * 841 107 90 0 chr15 21281034 21281156 -80099365 + AluSq/x SINE Alu 1 133 -179 282 264 86 71 chr15 21281167 21281307 -80099214 - ERVL LTR ERVL -5621 143 2 1918 179 42 32 chr15 21281315 21281718 -80098803 - MLT2D LTR ERVL -7 407 1 955 203 81 0 chr15 21281718 21281915 -80098606 - MER58B DNA MER1_type -29 312 100 216 0 0 0 chr15 21281951 21281975 -80098546 + (A)n Simple_repeat Simple_repeat 1 24 0 874 171 7 13 chr15 21282020 21282172 -80098349 + FAM SINE Alu 20 170 -15 480 270 20 7 chr15 21282716 21282868 -80097653 + MIR SINE MIR 2 155 -107 1042 175 0 0 chr15 21282869 21283035 -80097486 + AluJb SINE Alu 137 302 -10 1607 199 3 27 chr15 21283063 21283364 -80097157 - AluJo SINE Alu -5 307 14 32 26 0 0 chr15 21283383 21283422 -80097099 + AT_rich Low_complexity Low_complexity 1 39 0 214 235 59 0 chr15 21283452 21283503 -80097018 + MIR SINE MIR 184 237 -25 2263 114 3 0 chr15 21283957 21284263 -80096258 + AluSg SINE Alu 1 307 -3 725 35 0 0 chr15 21284555 21284641 -80095880 - L1PA3 LINE L1 0 6155 6070 207 0 0 0 chr15 21284708 21284731 -80095790 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2180 98 0 11 chr15 21284734 21285020 -80095501 - AluSc SINE Alu -26 283 1 1470 183 101 6 chr15 21285020 21285358 -80095163 - L1MC3 LINE L1 -23 7762 7393 * 3379 166 50 99 chr15 21285355 21285619 -80094902 - L1MB7 LINE L1 0 6184 5909 2444 100 0 0 chr15 21285619 21285929 -80094592 - AluSx SINE Alu -2 310 1 3379 166 50 99 chr15 21285929 21285976 -80094545 - L1MB7 LINE L1 -275 5909 5861 1719 189 0 3 chr15 21285976 21286277 -80094244 + AluJo SINE Alu 2 301 -11 3379 166 50 99 chr15 21286277 21286423 -80094098 - L1MB7 LINE L1 -323 5861 5709 1512 199 46 26 chr15 21286423 21286729 -80093792 - AluJo SINE Alu 0 312 1 3379 166 50 99 chr15 21286729 21286789 -80093732 - L1MB7 LINE L1 -475 5709 5648 2255 95 0 0 chr15 21286789 21287074 -80093447 - AluSg SINE Alu -17 293 9 3379 166 50 99 chr15 21287074 21287148 -80093373 - L1MB7 LINE L1 -536 5648 5572 1790 156 16 10 chr15 21287148 21287455 -80093066 - AluJo SINE Alu -3 309 1 1912 129 10 23 chr15 21287461 21287770 -80092751 - AluSx SINE Alu -7 305 1 3379 166 50 99 chr15 21287770 21288121 -80092400 - L1MB7 LINE L1 -617 5567 5297 2041 146 7 0 chr15 21288121 21288415 -80092106 - AluSx SINE Alu -16 296 1 3379 166 50 99 chr15 21288415 21288644 -80091877 - L1MB7 LINE L1 -887 5297 5058 304 231 27 7 chr15 21288644 21288791 -80091730 + (TA)n Simple_repeat Simple_repeat 2 151 0 273 133 0 0 chr15 21288819 21288864 -80091657 - L1MB7 LINE L1 -1144 5002 4958 29 28 0 0 chr15 21289329 21289365 -80091156 + AT_rich Low_complexity Low_complexity 1 36 0 322 254 97 6 chr15 21289403 21289568 -80090953 + L1MC3 LINE L1 7444 7623 -162 477 276 91 25 chr15 21289635 21289878 -80090643 - MIR SINE MIR -2 260 2 2232 110 3 0 chr15 21289929 21290228 -80090293 - AluSc SINE Alu -9 300 1 329 187 13 27 chr15 21290301 21290376 -80090145 - MER116 DNA Mariner -6 74 1 562 127 0 64 chr15 21295102 21295212 -80085309 - FLAM_A SINE Alu 0 142 40 1514 193 10 3 chr15 21295330 21295625 -80084896 - AluJo SINE Alu -15 297 1 677 153 85 25 chr15 21295952 21296070 -80084451 + FLAM_C SINE Alu 1 125 -18 839 143 54 0 chr15 21296296 21296443 -80084078 - L1MB7 LINE L1 -334 5850 5696 1423 109 0 0 chr15 21296592 21296776 -80083745 + AluSx SINE Alu 3 186 -126 249 250 250 9 chr15 21296799 21296911 -80083610 - L1MB7 LINE L1 -526 5640 5502 1219 157 89 8 chr15 21296953 21297189 -80083332 - AluJb SINE Alu -18 294 40 756 190 69 6 chr15 21297207 21297381 -80083140 - L1MB7 LINE L1 -733 5441 5257 383 257 16 82 chr15 21297392 21297575 -80082946 - L1MA10 LINE L1 -7 6327 6157 398 254 127 5 chr15 21297581 21297778 -80082743 - L1MB7 LINE L1 -870 5276 5056 21 36 0 0 chr15 21299513 21299541 -80080980 + AT_rich Low_complexity Low_complexity 1 28 0 327 268 113 12 chr15 21299743 21299911 -80080610 - L1MC4a LINE L1 -1918 5890 5706 2285 116 0 0 chr15 21299942 21300243 -80080278 + AluSg SINE Alu 1 301 -9 21 36 0 0 chr15 21300259 21300287 -80080234 + AT_rich Low_complexity Low_complexity 1 28 0 1728 169 28 3 chr15 21300364 21300654 -80079867 + AluJo SINE Alu 1 297 -15 1861 118 83 17 chr15 21300917 21301205 -80079316 - AluSp SINE Alu -6 307 1 2068 127 10 0 chr15 21301863 21302163 -80078358 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr15 21302171 21302192 -80078329 + AT_rich Low_complexity Low_complexity 1 21 0 902 275 112 83 chr15 21302661 21303333 -80077188 - MER21B LTR ERV1 -149 714 24 2245 100 0 7 chr15 21303967 21304266 -80076255 + AluSx SINE Alu 3 299 -13 1104 165 0 0 chr15 21304266 21304436 -80076085 + AluSg/x SINE Alu 132 301 -9 26 0 0 0 chr15 21304927 21304953 -80075568 + AT_rich Low_complexity Low_complexity 1 26 0 2162 116 3 0 chr15 21305742 21306036 -80074485 - AluSq SINE Alu -18 295 1 656 259 27 22 chr15 21306420 21306605 -80073916 + MER58A DNA MER1_type 33 218 -6 427 115 0 0 chr15 21306906 21306967 -80073554 + AluS SINE Alu 2 62 -256 1040 227 34 0 chr15 21507933 21508171 -79872350 + L1MA7 LINE L1 6043 6288 -3 2122 113 0 0 chr15 21508201 21508534 -79871987 + AluY SINE Alu 1 333 0 1156 273 50 34 chr15 21510538 21510978 -79869543 + L1MD2 LINE L1 17 463 -6077 3102 261 47 30 chr15 21511013 21511516 -79869005 + L1MD2 LINE L1 2998 3491 -3049 1839 166 3 0 chr15 21511516 21511833 -79868688 - AluSx SINE Alu 0 312 1 3102 261 47 30 chr15 21511833 21512511 -79868010 + L1MD2 LINE L1 3491 4200 -2340 1407 157 18 18 chr15 21512616 21512845 -79867676 - Tigger4(Zombi) DNA MER2_type -2502 229 1 4562 233 58 61 chr15 21512855 21513438 -79867083 - L1MC4a LINE L1 -58 7750 7167 2195 119 0 0 chr15 21513438 21513731 -79866790 + AluSg SINE Alu 3 295 -15 4562 233 58 61 chr15 21513731 21514636 -79865885 - L1MC4a LINE L1 -641 7167 6267 393 313 105 35 chr15 21514791 21515133 -79865388 - MLT1J1 LTR MaLR -61 385 20 538 293 175 17 chr15 21516264 21516561 -79863960 + L2 LINE L2 2967 3310 -3 1574 6 0 0 chr15 21516827 21516997 -79863524 + AluY SINE Alu 134 303 -8 518 382 13 9 chr15 21517262 21517490 -79863031 + MIR SINE MIR 3 231 -31 225 83 0 0 chr15 21517609 21517645 -79862876 + (TC)n Simple_repeat Simple_repeat 2 37 0 1239 134 3 0 chr15 21518538 21518897 -79861624 + (TGGA)n Simple_repeat Simple_repeat 1 360 0 585 179 0 11 chr15 21519035 21519130 -79861391 + AluJo/FLAM SINE Alu 32 125 -187 346 62 0 0 chr15 21519130 21519178 -79861343 - AluSc SINE Alu -5 294 247 4178 202 78 33 chr15 21519313 21519367 -79861154 + L1MD2 LINE L1 5196 5246 -1507 2339 57 3 3 chr15 21519367 21519683 -79860838 - AluY SINE Alu 0 316 1 4178 202 78 33 chr15 21519683 21521100 -79859421 + L1MD2 LINE L1 5246 6743 -10 2120 163 98 28 chr15 21521117 21521517 -79859004 + MSTA LTR MaLR 1 428 0 2312 102 0 0 chr15 21521663 21521956 -79858565 + AluSx SINE Alu 1 293 -19 188 246 98 16 chr15 21522972 21523033 -79857488 - MIR SINE MIR -147 115 50 2408 88 0 0 chr15 21523161 21523467 -79857054 + AluSg SINE Alu 1 306 -4 1530 152 4 8 chr15 21524519 21524783 -79855738 + AluJo SINE Alu 41 303 -9 342 0 0 0 chr15 21525305 21525343 -79855178 + (CA)n Simple_repeat Simple_repeat 2 39 0 189 118 0 59 chr15 21525360 21525394 -79855127 - MIR SINE MIR -115 147 116 615 153 0 108 chr15 21526550 21526707 -79853814 + L1MA4 LINE L1 6155 6294 -6 220 162 0 0 chr15 21526880 21526917 -79853604 - L2 LINE L2 0 3272 3236 2002 115 28 0 chr15 21528006 21528292 -79852229 + AluSq SINE Alu 1 294 -19 222 37 0 0 chr15 21528744 21528771 -79851750 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr15 21530110 21530133 -79850388 + AT_rich Low_complexity Low_complexity 1 23 0 2328 184 28 23 chr15 21530133 21530417 -79850104 - L1MB3 LINE L1 -3 6180 5892 1929 141 3 26 chr15 21530417 21530721 -79849800 - AluJo SINE Alu -14 298 2 2328 184 28 23 chr15 21530721 21530909 -79849612 - L1MB3 LINE L1 -291 5892 5706 555 239 18 18 chr15 21531009 21531122 -79849399 - FRAM SINE Alu -63 113 1 3628 224 38 32 chr15 21531124 21531292 -79849229 - L1MB3 LINE L1 -959 5187 5021 2312 108 0 3 chr15 21531292 21531597 -79848924 + AluSp SINE Alu 3 306 -7 3628 224 38 32 chr15 21531597 21532475 -79848046 - L1MB3 LINE L1 -1125 5021 4135 308 269 13 13 chr15 21534947 21535025 -79845496 - MIR SINE MIR -122 140 63 1288 263 78 21 chr15 21535259 21535685 -79844836 + L1ME2 LINE L1 19 468 -5958 679 160 0 0 chr15 21535688 21535788 -79844733 + FLAM_A SINE Alu 2 101 -41 24 0 0 0 chr15 21535813 21535837 -79844684 + AT_rich Low_complexity Low_complexity 1 24 0 4488 207 71 19 chr15 21535837 21537484 -79843037 + L1MCb LINE L1 404 2140 -4424 249 341 24 16 chr15 21537970 21538096 -79842425 - MIR SINE MIR 0 262 136 26 0 0 0 chr15 21540681 21540707 -79839814 + AT_rich Low_complexity Low_complexity 1 26 0 1784 257 66 10 chr15 21540909 21541515 -79839006 + L1ME2 LINE L1 781 1420 -5187 * 6697 243 67 29 chr15 21541487 21542493 -79838028 + L1ME2 LINE L1 3176 4142 -2304 2508 60 3 0 chr15 21542493 21542795 -79837726 + AluY SINE Alu 1 303 -8 6697 243 67 29 chr15 21542795 21544526 -79835995 + L1ME2 LINE L1 4142 6018 -428 1269 218 7 41 chr15 21544560 21544854 -79835667 - MLT1A1 LTR MaLR -20 345 62 1036 214 62 14 chr15 21544854 21545175 -79835346 - MSTD LTR MaLR -2 394 1 6169 233 98 18 chr15 21545183 21546770 -79833751 - MSTD-int LTR MaLR -8 1727 13 980 202 177 61 chr15 21546790 21547117 -79833404 - MLT1A1 LTR MaLR 0 365 1 351 153 51 0 chr15 21547118 21547177 -79833344 - MLT1A1 LTR MaLR -307 67 6 785 242 71 76 chr15 21547178 21547571 -79832950 + L1ME2 LINE L1 6020 6410 -34 1175 203 0 0 chr15 21547571 21547788 -79832733 + L1PA16 LINE L1 5950 6166 0 189 175 0 0 chr15 21548463 21548503 -79832018 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 214 391 29 10 chr15 21549036 21549243 -79831278 - L2 LINE L2 -653 2661 2451 1449 162 26 0 chr15 21549588 21549816 -79830705 - MER46A DNA MER2_type -1 235 2 244 323 75 25 chr15 21550257 21550418 -79830103 - L2 LINE L2 -190 3082 2914 511 288 50 40 chr15 21550447 21550645 -79829876 + MIR SINE MIR 14 213 -49 288 296 10 10 chr15 21550781 21550879 -79829642 - L1ME1 LINE L1 -6 6160 6063 425 211 98 16 chr15 21550879 21551002 -79829519 + MSTB LTR MaLR 1 133 -293 1466 172 51 65 chr15 21551113 21551398 -79829123 + MSTB LTR MaLR 74 355 -71 2372 88 13 0 chr15 21551398 21551705 -79828816 - AluY SINE Alu 0 311 1 1466 172 51 65 chr15 21551705 21551773 -79828748 + MSTB LTR MaLR 355 422 -4 2488 206 80 7 chr15 21551777 21552138 -79828383 - L1ME1 LINE L1 -99 6067 5734 2047 94 0 0 chr15 21552138 21552424 -79828097 - AluSq SINE Alu 0 313 28 2488 206 80 7 chr15 21552424 21552773 -79827748 - L1ME1 LINE L1 -432 5734 5184 871 181 0 0 chr15 21554070 21554203 -79826318 - FLAM_C SINE Alu 0 133 1 191 296 131 34 chr15 21554244 21554450 -79826071 - L2 LINE L2 -618 2696 2471 440 327 12 6 chr15 21556012 21556177 -79824344 + MIR SINE MIR 78 243 -19 1857 126 159 73 chr15 21556184 21556556 -79823965 - MER4A LTR ERV1 0 664 261 632 130 0 20 chr15 21556556 21556656 -79823865 - MER4A LTR ERV1 -566 98 1 216 313 0 30 chr15 21558674 21558840 -79821681 + (CAGCC)n Simple_repeat Simple_repeat 1 161 0 2315 71 3 3 chr15 21560082 21560398 -79820123 - AluSp SINE Alu 0 316 1 213 319 14 0 chr15 21561062 21561131 -79819390 + L2 LINE L2 3200 3269 -3 3412 66 2 18 chr15 21561772 21562227 -79818294 + LTR7 LTR ERV1 1 448 -2 2985 135 74 0 chr15 21563064 21563576 -79816945 + MER34C LTR ERV1 36 585 0 209 326 67 44 chr15 21564530 21564665 -79815856 - MIR3 SINE MIR -56 152 15 4125 163 27 14 chr15 21566156 21566869 -79813652 + MER72 LTR ERV1 1 722 0 3815 183 20 11 chr15 21567276 21567991 -79812530 + MER72 LTR ERV1 2 722 0 246 231 0 0 chr15 21569687 21569752 -79810769 + GA-rich Low_complexity Low_complexity 2 66 0 931 124 0 15 chr15 21571031 21571168 -79809353 + AluJo SINE Alu 1 135 -177 1576 195 13 23 chr15 21571168 21571476 -79809045 + AluJo SINE Alu 1 305 -7 255 306 108 14 chr15 21571995 21572217 -79808304 - LTR16C LTR ERVL -12 479 237 3384 178 30 10 chr15 21572225 21572831 -79807690 + Tigger1 DNA MER2_type 1 618 -1800 258 294 24 0 chr15 21573759 21573844 -79806677 - L2 LINE L2 0 3313 3227 28 95 0 0 chr15 21574002 21574086 -79806435 + AT_rich Low_complexity Low_complexity 1 84 0 277 263 53 35 chr15 21574580 21574694 -79805827 - MIR3 SINE MIR -51 157 42 1551 158 50 36 chr15 21575309 21575587 -79804934 - AluJo SINE Alu -21 291 10 2171 170 48 18 chr15 21576933 21577328 -79803193 - MLT2D LTR ERVL -7 407 1 435 241 0 0 chr15 21578618 21578780 -79801741 + CT-rich Low_complexity Low_complexity 1 162 0 1704 175 21 126 chr15 21581248 21581780 -79798741 + MER31A LTR ERV1 1 476 -9 258 143 0 0 chr15 21581803 21581852 -79798669 + (CA)n Simple_repeat Simple_repeat 2 50 0 210 303 219 0 chr15 21582554 21582732 -79797789 + L2 LINE L2 3006 3222 -91 2281 106 3 0 chr15 21582757 21583156 -79797365 - AluSx SINE Alu 0 400 1 386 121 15 0 chr15 21584003 21584069 -79796452 + GA-rich Low_complexity Low_complexity 3 69 0 458 236 51 76 chr15 21584603 21584931 -79795590 - MER34 LTR ERV1 0 750 365 375 253 70 13 chr15 21584918 21585076 -79795445 - LTR48B LTR ERV1 -354 290 124 * 227 247 13 26 chr15 21585058 21585135 -79795386 - MER34C LTR ERV1 -449 136 61 * 815 157 144 0 chr15 21586229 21586382 -79794139 + AluJb SINE Alu 133 307 -5 195 69 0 0 chr15 21587651 21587680 -79792841 + (GA)n Simple_repeat Simple_repeat 1 29 0 242 338 35 14 chr15 21587792 21587934 -79792587 - MIR SINE MIR -1 261 117 295 303 110 39 chr15 21589085 21589240 -79791281 - MIR SINE MIR -86 176 11 869 212 0 0 chr15 21589421 21589600 -79790921 - MER5A DNA MER1_type -4 185 7 229 235 0 0 chr15 21591537 21591596 -79788925 - MIR SINE MIR -65 143 94 1006 133 24 229 chr15 21591975 21592290 -79788231 + L1MA3 LINE L1 5948 6145 -160 2001 92 51 34 chr15 21592290 21592584 -79787937 + AluSp SINE Alu 15 313 0 1006 133 24 229 chr15 21592584 21592718 -79787803 + L1MA3 LINE L1 6145 6305 0 410 167 114 53 chr15 21592883 21593015 -79787506 + L1MDa LINE L1 2065 2204 -4336 1204 140 19 43 chr15 21593016 21593223 -79787298 + AluJo SINE Alu 88 289 -23 1327 241 54 35 chr15 21593223 21594000 -79786521 + L1MDa LINE L1 2196 2993 -3547 1307 243 45 43 chr15 21593990 21594409 -79786112 + L1MD2 LINE L1 5921 6340 -19 * 272 240 0 10 chr15 21595923 21596019 -79784502 + (TG)n Simple_repeat Simple_repeat 2 96 0 21 36 0 0 chr15 21596160 21596188 -79784333 + AT_rich Low_complexity Low_complexity 1 28 0 471 172 0 28 chr15 21596191 21596424 -79784097 + AluJo SINE Alu 1 286 -26 185 139 0 70 chr15 21596545 21596588 -79783933 - MIR SINE MIR -63 145 106 2260 121 0 0 chr15 21597022 21597327 -79783194 - AluSg SINE Alu -5 305 1 2140 107 4 0 chr15 21597721 21598036 -79782485 - AluSx SINE Alu 0 316 1 2581 192 28 102 chr15 21598832 21599578 -79780943 - LTR8 LTR ERV1 0 691 1 287 336 66 0 chr15 21599580 21599717 -79780804 + MIR SINE MIR 97 242 -20 2163 132 0 24 chr15 21600448 21600789 -79779732 - MER1B DNA MER1_type -4 333 1 189 255 102 20 chr15 21601010 21601108 -79779413 - MIR3 SINE MIR -22 186 81 2503 71 0 0 chr15 21601519 21601816 -79778705 - AluY SINE Alu -14 297 1 352 230 210 26 chr15 21601951 21602260 -79778261 + L1ME4a LINE L1 5753 6118 -3 226 160 200 0 chr15 21602290 21602340 -79778181 + FLAM_A SINE Alu 1 60 -72 2466 79 0 3 chr15 21602460 21602764 -79777757 + AluY SINE Alu 1 303 -8 512 76 0 0 chr15 21603136 21603202 -79777319 + LTR8A LTR ERV1 1 66 -661 3153 165 16 76 chr15 21603202 21603937 -79776584 - LTR8 LTR ERV1 0 691 1 34 0 0 0 chr15 21604308 21604342 -79776179 + AT_rich Low_complexity Low_complexity 1 34 0 2708 158 54 87 chr15 21604474 21605284 -79775237 - MER4D LTR ERV1 -8 895 1 3642 173 96 14 chr15 21605530 21606405 -79774116 - LTR28 LTR ERV1 0 1020 1 181 402 10 0 chr15 21606823 21606925 -79773596 + L2 LINE L2 1160 1262 -2052 200 267 0 0 chr15 21607134 21607179 -79773342 + (TCCA)n Simple_repeat Simple_repeat 3 47 0 342 0 0 0 chr15 21607209 21607247 -79773274 + (CA)n Simple_repeat Simple_repeat 1 38 0 1222 188 42 127 chr15 21607374 21607783 -79772738 - MLT1A2 LTR MaLR 0 374 1 2027 165 32 0 chr15 21608554 21608929 -79771592 + L1MB3 LINE L1 5790 6176 -7 3925 195 39 31 chr15 21609375 21609764 -79770757 + L1MB7 LINE L1 4978 5362 -822 2485 72 0 0 chr15 21609764 21610068 -79770453 + AluY SINE Alu 1 304 -7 3925 195 39 31 chr15 21610068 21610862 -79769659 + L1MB7 LINE L1 5362 6175 -9 521 168 126 0 chr15 21611020 21611115 -79769406 + FRAM SINE Alu 38 144 -32 1140 201 28 42 chr15 21611646 21611934 -79768587 - AluJo SINE Alu -17 295 12 2116 191 30 7 chr15 21612218 21612648 -79767873 - MLT1C LTR MaLR 0 467 28 193 289 0 0 chr15 21612989 21613041 -79767480 + L2 LINE L2 3261 3312 -1 234 0 0 0 chr15 21613258 21613284 -79767237 + (CA)n Simple_repeat Simple_repeat 1 26 0 220 212 30 15 chr15 21614064 21614130 -79766391 + (TAAA)n Simple_repeat Simple_repeat 3 69 0 901 180 0 173 chr15 21614495 21614719 -79765802 + MER8 DNA MER2_type 1 166 -73 1708 188 3 13 chr15 21614719 21615028 -79765493 + AluJo SINE Alu 6 311 -1 901 180 0 173 chr15 21615028 21615092 -79765429 + MER8 DNA MER2_type 166 239 0 2417 68 0 0 chr15 21616378 21616670 -79763851 - AluY SINE Alu -19 292 1 1995 160 20 18 chr15 21617289 21617632 -79762889 + MER2 DNA MER2_type 1 344 0 251 224 59 47 chr15 21618193 21618278 -79762243 - MER5B DNA MER1_type -40 138 53 321 324 122 15 chr15 21618304 21618705 -79761816 - L2 LINE L2 -982 2332 1889 895 296 106 17 chr15 21618758 21619231 -79761290 + L1MEd LINE L1 2 516 -5603 1635 275 138 41 chr15 21619356 21620516 -79760005 - L2 LINE L2 -3 3310 2030 438 136 152 32 chr15 21620516 21620637 -79759884 - LTR40b LTR ERVL 0 462 355 539 186 0 0 chr15 21620637 21620723 -79759798 - MER45 DNA AcHobo 0 1581 1496 317 75 19 0 chr15 21621884 21621937 -79758584 + (TA)n Simple_repeat Simple_repeat 2 55 0 180 111 0 0 chr15 21622032 21622059 -79758462 + (TATG)n Simple_repeat Simple_repeat 2 28 0 293 329 20 13 chr15 21622572 21622721 -79757800 - L2 LINE L2 -922 2392 2243 4860 37 4 9 chr15 21622919 21623480 -79757041 - LTR6B LTR ERV1 0 558 1 22 56 0 0 chr15 21623625 21623661 -79756860 + AT_rich Low_complexity Low_complexity 1 36 0 283 342 99 25 chr15 21624015 21624217 -79756304 - MIR SINE MIR -13 249 33 314 361 46 0 chr15 21624916 21625024 -79755497 + L2 LINE L2 3137 3249 -23 255 0 111 0 chr15 21628189 21628234 -79752287 + T-rich Low_complexity Low_complexity 1 50 0 250 245 0 0 chr15 21628569 21628618 -79751903 + L2 LINE L2 3265 3313 0 14513 126 44 16 chr15 21628623 21630953 -79749568 - Tigger1 DNA MER2_type 0 2418 23 203 267 67 40 chr15 21631846 21631921 -79748600 + MIR SINE MIR 93 169 -93 1568 203 60 8 chr15 21632904 21633274 -79747247 - MER74A LTR ERVL 0 558 170 989 185 28 4 chr15 21633339 21633546 -79746975 - MER74A LTR ERVL -360 262 2 211 203 102 0 chr15 21634908 21634967 -79745554 + L3b LINE CR1 1304 1368 -215 315 128 70 23 chr15 21636929 21637101 -79743420 + (TG)n Simple_repeat Simple_repeat 1 180 0 15954 28 23 1 chr15 21637227 21639914 -79740607 - L1PA3 LINE L1 -2 6153 3402 236 69 0 0 chr15 21639908 21639937 -79740584 + L1PA3 LINE L1 3394 3422 -2724 * 278 193 0 18 chr15 21642353 21642410 -79738111 - L1ME LINE L1 -535 5586 5531 462 294 73 104 chr15 21642840 21643292 -79737229 + L2 LINE L2 2832 3269 -44 186 43 0 0 chr15 21643442 21643465 -79737056 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 2333 119 0 0 chr15 21643465 21643775 -79736746 - AluSg SINE Alu 0 310 1 1440 218 0 14 chr15 21643777 21644070 -79736451 - AluJo SINE Alu -18 294 6 310 309 78 79 chr15 21644130 21644799 -79735722 - L1M4 LINE L1 -1488 4658 3991 3169 119 32 19 chr15 21644811 21645342 -79735179 - LOR1-int LTR ERV1 -5643 2477 1940 * 4545 106 25 21 chr15 21645341 21646093 -79734428 - LOR1-int LTR ERV1 -6323 1797 1043 912 137 63 30 chr15 21646086 21646266 -79734255 - LOR1-int LTR ERV1 -6603 1213 701 * 1296 148 27 5 chr15 21646251 21646474 -79734047 - LOR1-int LTR ERV1 -7528 592 365 2564 138 22 118 chr15 21646499 21647049 -79733472 - LOR1a LTR ERV1 0 497 1 690 200 0 58 chr15 21647049 21647239 -79733282 - L1MA7 LINE L1 -79 6416 6238 4636 172 46 15 chr15 21647545 21647772 -79732749 - L1MA7 LINE L1 -265 6230 6012 456 19 0 0 chr15 21647772 21647825 -79732696 + (TG)n Simple_repeat Simple_repeat 2 54 0 4636 172 46 15 chr15 21647825 21649155 -79731366 - L1MA7 LINE L1 -483 6012 4604 180 0 0 0 chr15 21649155 21649175 -79731346 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 4636 172 46 15 chr15 21649175 21649294 -79731227 - L1MA7 LINE L1 -1891 4604 4490 225 0 0 0 chr15 21649294 21649319 -79731202 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1103 232 4 8 chr15 21649329 21649570 -79730951 - AluJo SINE Alu -22 290 51 3019 123 7 7 chr15 21649634 21650064 -79730457 - MER57B LTR ERV1 -3 431 2 477 80 0 0 chr15 21650066 21650141 -79730380 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1225 192 8 27 chr15 21650190 21650451 -79730070 - L1MA7 LINE L1 -1944 4406 4151 14887 180 22 13 chr15 21650462 21650730 -79729791 - L1MA2 LINE L1 0 7723 7459 2242 134 132 5 chr15 21650730 21651110 -79729411 + MSTA LTR MaLR 1 428 0 14887 180 22 13 chr15 21651110 21655312 -79725209 - L1MA2 LINE L1 -264 7459 3217 2912 254 39 63 chr15 21655307 21655486 -79725035 - L1MA7 LINE L1 -3965 2385 2203 * 2000 102 49 0 chr15 21655486 21655770 -79724751 - AluSx SINE Alu -14 298 1 2912 254 39 63 chr15 21655770 21657542 -79722979 - L1MA7 LINE L1 -4147 2203 804 2261 304 36 24 chr15 21657690 21658543 -79721978 - L1MA7 LINE L1 -5520 761 2 2479 134 32 55 chr15 21659691 21660125 -79720396 + MSTC LTR MaLR 1 424 -4 21 0 0 0 chr15 21660658 21660679 -79719842 + AT_rich Low_complexity Low_complexity 1 21 0 2082 156 89 60 chr15 21660827 21661264 -79719257 - LTR47A LTR ERVL -1 451 2 391 248 70 78 chr15 21661270 21661500 -79719021 + L1M4 LINE L1 1 228 -6314 296 308 41 31 chr15 21661796 21661968 -79718553 + L1M4 LINE L1 543 938 -5708 1341 186 3 69 chr15 21662098 21662388 -79718133 + AluJo SINE Alu 3 273 -39 872 245 99 25 chr15 21662428 21662791 -79717730 + L1M4 LINE L1 852 1241 -5301 428 195 15 41 chr15 21662801 21662866 -79717655 - L1M2 LINE L1 -708 5475 5410 3537 171 54 17 chr15 21662866 21662907 -79717614 + L1MB4 LINE L1 5429 5467 -713 207 0 0 0 chr15 21662907 21662930 -79717591 + (TA)n Simple_repeat Simple_repeat 2 24 0 3537 171 54 17 chr15 21662930 21663610 -79716911 + L1MB4 LINE L1 5467 6179 -1 428 195 15 41 chr15 21663610 21663699 -79716822 - L1M2 LINE L1 -773 5410 5328 262 102 102 20 chr15 21663782 21663831 -79716690 + MER5A DNA MER1_type 9 61 -128 2095 94 4 7 chr15 21663876 21664151 -79716370 - AluSg SINE Alu -8 302 29 687 219 22 114 chr15 21664917 21665145 -79715376 + MER3 DNA MER1_type 3 209 0 257 240 0 0 chr15 21665102 21665152 -79715369 - MER3 DNA MER1_type -119 90 41 * 519 319 52 42 chr15 21665860 21666167 -79714354 - MLT1H LTR MaLR -239 310 1 259 322 88 59 chr15 21667074 21667347 -79713174 - L2 LINE L2 -2 3311 3031 439 235 111 12 chr15 21667675 21667837 -79712684 + Tigger8 DNA MER2_type 211 388 -278 230 263 13 0 chr15 21668190 21668266 -79712255 + (TA)n Simple_repeat Simple_repeat 2 78 0 589 321 20 13 chr15 21668374 21668599 -79711922 + MIR SINE MIR 23 252 -10 2149 166 37 21 chr15 21669757 21670190 -79710331 - L1MA7 LINE L1 -34 6257 5818 592 81 0 47 chr15 21670207 21670293 -79710228 - AluSg/x SINE Alu -11 299 218 306 73 0 0 chr15 21670474 21670515 -79710006 + (TG)n Simple_repeat Simple_repeat 2 42 0 2223 84 7 10 chr15 21670616 21670936 -79709585 + AluY SINE Alu 1 311 0 1012 169 13 56 chr15 21672728 21672837 -79707684 + L1MA8 LINE L1 6071 6166 -125 2318 74 3 7 chr15 21672837 21673134 -79707387 + AluY SINE Alu 1 296 -15 1012 169 13 56 chr15 21673134 21673255 -79707266 + L1MA8 LINE L1 6166 6291 0 24 0 0 0 chr15 21673257 21673281 -79707240 + AT_rich Low_complexity Low_complexity 1 24 0 224 213 0 0 chr15 21673684 21673731 -79706790 + GA-rich Low_complexity Low_complexity 2 48 0 420 264 101 71 chr15 21674429 21674766 -79705755 + L3 LINE CR1 1165 1511 -66 617 294 161 26 chr15 21674934 21675441 -79705080 - L2 LINE L2 -5 3308 2728 206 297 54 0 chr15 21677466 21677540 -79702981 + L2 LINE L2 2973 3050 -222 1547 199 39 14 chr15 21678826 21679108 -79701413 + AluJo SINE Alu 1 289 -13 495 153 163 0 chr15 21679162 21679260 -79701261 - Tigger3(Golem) DNA MER2_type -2915 114 1 273 280 58 79 chr15 21679267 21679373 -79701148 - L1MEd LINE L1 -4785 1344 1237 2130 139 0 0 chr15 21679373 21679682 -79700839 - AluSx SINE Alu -3 309 1 273 280 58 79 chr15 21679682 21679929 -79700592 - L1MEd LINE L1 -4892 1237 1007 241 326 34 11 chr15 21679915 21680004 -79700517 - L1MEd LINE L1 -5482 637 547 * 21 0 0 0 chr15 21681229 21681250 -79699271 + AT_rich Low_complexity Low_complexity 1 21 0 4166 174 67 35 chr15 21681997 21682851 -79697670 - L1MB8 LINE L1 -2 6176 5278 1938 144 0 3 chr15 21682851 21683135 -79697386 - AluJo SINE Alu -19 293 11 4166 174 67 35 chr15 21683135 21683314 -79697207 - L1MB8 LINE L1 -900 5278 5106 201 119 24 24 chr15 21683518 21683560 -79696961 + T-rich Low_complexity Low_complexity 4 45 0 565 158 87 8 chr15 21685528 21685655 -79694866 - MER3 DNA MER1_type -8 201 65 1986 128 0 0 chr15 21686182 21686456 -79694065 - AluSx SINE Alu -38 274 1 1174 141 0 10 chr15 21686492 21686684 -79693837 + Tigger7 DNA MER2_type 2298 2487 0 2021 99 53 30 chr15 21686693 21686995 -79693526 - AluSg SINE Alu -1 309 1 25 0 0 0 chr15 21687004 21687029 -79693492 + AT_rich Low_complexity Low_complexity 1 25 0 422 152 40 40 chr15 21687044 21687143 -79693378 + L1MB7 LINE L1 6077 6175 -9 1242 233 113 33 chr15 21687652 21688192 -79692329 - L1M4 LINE L1 -3401 2745 2163 843 148 0 40 chr15 21688208 21688384 -79692137 - Charlie5 DNA MER1_type 0 2612 2444 2146 103 14 7 chr15 21688386 21688676 -79691845 - AluSx SINE Alu -14 298 7 231 61 0 0 chr15 21688694 21688727 -79691794 + (GA)n Simple_repeat Simple_repeat 2 34 0 276 284 27 0 chr15 21690028 21690102 -79690419 - MIR SINE MIR -71 191 116 2096 89 7 0 chr15 21690344 21690615 -79689906 - AluSc SINE Alu 0 309 37 448 176 0 0 chr15 21691116 21691190 -79689331 + MLT1I LTR MaLR 336 409 0 25 0 0 0 chr15 21691573 21691598 -79688923 + AT_rich Low_complexity Low_complexity 1 25 0 514 307 50 39 chr15 21692653 21693011 -79687510 + L1ME4a LINE L1 5518 5879 -242 2151 106 0 58 chr15 21693604 21693933 -79686588 + AluSg SINE Alu 1 310 0 1766 184 0 19 chr15 21695665 21695975 -79684546 - AluJb SINE Alu -8 304 1 379 237 13 92 chr15 21696434 21696586 -79683935 - MER69A DNA AcHobo -1 176 37 234 0 0 0 chr15 21697225 21697251 -79683270 + (CAT)n Simple_repeat Simple_repeat 1 26 0 420 323 46 32 chr15 21697295 21697512 -79683009 - MIR SINE MIR -30 232 13 1548 153 8 4 chr15 21698145 21698380 -79682141 - MER46A DNA MER2_type 0 236 1 23 54 0 0 chr15 21698489 21698526 -79681995 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr15 21702725 21702746 -79677775 + AT_rich Low_complexity Low_complexity 1 21 0 1761 180 22 19 chr15 21702852 21703175 -79677346 - MSTA LTR MaLR -2 426 103 943 88 7 61 chr15 21703170 21703318 -79677203 + MSTA LTR MaLR 12 151 -277 * 297 56 0 0 chr15 21703428 21703464 -79677057 - MSTA LTR MaLR -392 36 1 3096 135 9 0 chr15 21704510 21704970 -79675551 - L1PA15 LINE L1 -2 6163 5700 2280 88 0 23 chr15 21706750 21707058 -79673463 - AluSc SINE Alu -8 301 1 819 153 0 0 chr15 21707627 21707745 -79672776 + FLAM_C SINE Alu 1 118 -15 673 122 0 43 chr15 21707746 21707934 -79672587 + (TA)n Simple_repeat Simple_repeat 1 180 0 829 139 0 0 chr15 21707947 21708069 -79672452 + FRAM SINE Alu 31 152 -24 2349 84 0 0 chr15 21708513 21708811 -79671710 + AluY SINE Alu 8 305 -6 2391 81 3 3 chr15 21709649 21709947 -79670574 + AluSp SINE Alu 1 298 -15 830 248 25 46 chr15 21711052 21711334 -79669187 - MLT1E2 LTR MaLR 0 626 351 1839 118 16 3 chr15 21711334 21711655 -79668866 - L1M1 LINE L1 -681 5622 5298 703 288 58 18 chr15 21711656 21711964 -79668557 - MLT1E2 LTR MaLR -274 352 29 2731 119 72 15 chr15 21711964 21712425 -79668096 - LTR45B LTR ERV1 0 489 3 703 288 58 18 chr15 21712425 21712443 -79668078 - MLT1E2 LTR MaLR -597 29 13 180 200 0 0 chr15 21714241 21714286 -79666235 + (CA)n Simple_repeat Simple_repeat 2 46 0 258 81 0 0 chr15 21716733 21716770 -79663751 + (CA)n Simple_repeat Simple_repeat 2 38 0 336 302 35 53 chr15 21719858 21720027 -79660494 - HAL1b LINE L1 -457 891 726 1167 270 33 2 chr15 21720690 21721083 -79659438 - L1M4 LINE L1 -1909 4237 3833 6892 56 3 122 chr15 21721110 21722162 -79658359 - L1PA7 LINE L1 -4 6150 5136 362 330 56 39 chr15 21722401 21722634 -79657887 - HAL1 LINE L1 -698 1809 1573 232 293 20 0 chr15 21722640 21722739 -79657782 - HAL1b LINE L1 -866 482 382 472 332 164 15 chr15 21722800 21723074 -79657447 - HAL1 LINE L1 -1091 1416 1102 335 257 100 0 chr15 21723077 21723094 -79657427 - L1MA10 LINE L1 -1 6333 6317 2524 227 66 59 chr15 21723094 21723598 -79656923 - L1ME1 LINE L1 -9 6157 5658 241 94 0 0 chr15 21723598 21723630 -79656891 - U2 snRNA snRNA -155 33 2 2524 227 66 59 chr15 21723630 21724745 -79655776 - L1ME1 LINE L1 -508 5658 4504 868 142 120 49 chr15 21724759 21724942 -79655579 - MER20 DNA MER1_type 0 219 24 330 222 15 89 chr15 21724971 21725018 -79655503 - L1ME1 LINE L1 -1640 4506 4457 2266 97 7 3 chr15 21725018 21725318 -79655203 - AluSp SINE Alu -12 301 1 330 222 15 89 chr15 21725318 21725405 -79655116 - L1ME1 LINE L1 -1689 4457 4382 2434 94 0 0 chr15 21725917 21726226 -79654295 + AluSg SINE Alu 1 309 -1 2403 80 0 3 chr15 21728180 21728482 -79652039 + AluY SINE Alu 1 301 -10 338 205 40 40 chr15 21728765 21728916 -79651605 + L1MB7 LINE L1 4477 4627 -1519 267 146 51 0 chr15 21728934 21729000 -79651521 - MLT2C2 LTR ERVL -2 462 417 2322 188 33 7 chr15 21729253 21729706 -79650815 + MLT1C LTR MaLR 3 467 0 3141 160 29 21 chr15 21730524 21731155 -79649366 + LTR51 LTR ERV1 1 636 -35 1074 132 3 5 chr15 21731159 21731439 -79649082 + MER4B LTR ERV1 1 317 -293 * 1149 139 81 14 chr15 21731430 21731653 -79648868 + MER4E LTR ERV1 531 768 -11 305 322 86 78 chr15 21731999 21732359 -79648162 + L1M4b LINE L1 340 702 -6157 417 221 0 0 chr15 21732369 21732455 -79648066 + L1M4b LINE L1 969 1054 -5805 949 172 0 0 chr15 21732455 21732600 -79647921 + AluSq/x SINE Alu 1 145 -168 291 245 5 20 chr15 21732628 21732733 -79647788 + FLAM_A SINE Alu 7 56 -76 635 103 0 0 chr15 21732770 21732857 -79647664 + MER4B LTR ERV1 30 116 -494 1023 221 4 4 chr15 21732857 21733101 -79647420 + L1MB7 LINE L1 4706 4949 -1197 300 220 0 0 chr15 21733103 21733162 -79647359 - L1 LINE L1 -843 5303 5245 2927 188 21 3 chr15 21733165 21733770 -79646751 - L1 LINE L1 -876 5270 4655 * 3085 228 30 40 chr15 21733765 21734401 -79646120 + L1MB7 LINE L1 4958 5568 -616 2421 68 0 7 chr15 21734401 21734697 -79645824 - AluY SINE Alu -15 296 3 3085 228 30 40 chr15 21734697 21735308 -79645213 + L1MB7 LINE L1 5568 6184 0 416 302 24 0 chr15 21735299 21735468 -79645053 + L1M4b LINE L1 2364 2536 -4602 * 998 171 37 5 chr15 21735467 21735683 -79644838 + L1MA6 LINE L1 5895 6117 -183 596 193 20 13 chr15 21735791 21735941 -79644580 + L1MA8 LINE L1 6139 6289 -2 25 0 0 0 chr15 21735975 21736000 -79644521 + AT_rich Low_complexity Low_complexity 1 25 0 211 217 0 0 chr15 21736585 21736631 -79643890 + (CTA)n Simple_repeat Simple_repeat 1 46 0 314 314 93 0 chr15 21736644 21736762 -79643759 - MIR SINE MIR -17 245 117 1036 168 16 0 chr15 21737217 21737408 -79643113 + MLT1A1 LTR MaLR 1 194 -171 367 258 110 19 chr15 21737452 21737607 -79642914 - MLT1H LTR MaLR -318 231 63 296 156 0 0 chr15 21738127 21738172 -79642349 - MLT1A1 LTR MaLR 0 365 321 24 0 0 0 chr15 21739369 21739393 -79641128 + AT_rich Low_complexity Low_complexity 1 24 0 251 156 0 22 chr15 21739979 21740024 -79640497 + L2 LINE L2 3220 3263 -9 2071 107 0 0 chr15 21740489 21740759 -79639762 + AluSc SINE Alu 1 270 -39 3853 163 44 13 chr15 21740802 21741551 -79638970 + LTR39 LTR ERV1 12 783 0 2330 88 7 0 chr15 21743054 21743349 -79637172 - AluSg SINE Alu -12 298 2 780 174 71 10 chr15 21743360 21743556 -79636965 - L1MD2 LINE L1 -1 6358 6151 228 111 0 0 chr15 21743558 21743594 -79636927 + (TG)n Simple_repeat Simple_repeat 2 37 0 26875 126 9 79 chr15 21743734 21749225 -79631296 - L1P LINE L1 -1026 5120 12 3310 240 71 32 chr15 21749261 21750375 -79630146 - L1M4 LINE L1 -2681 3701 2537 2167 125 0 0 chr15 21750375 21750663 -79629858 - AluSx SINE Alu -13 299 12 3310 240 71 32 chr15 21750663 21750873 -79629648 - L1M4 LINE L1 -3845 2537 2337 1479 185 0 38 chr15 21750905 21751192 -79629329 - AluJo SINE Alu -5 307 32 329 322 68 49 chr15 21751193 21751398 -79629123 - HAL1 LINE L1 -1480 1027 819 993 228 14 9 chr15 21752330 21752549 -79627972 + MER58A DNA MER1_type 2 221 -3 3724 233 31 8 chr15 21753317 21754487 -79626034 + L1MB8 LINE L1 3180 4375 -1771 3475 174 42 19 chr15 21754489 21755239 -79625282 + L1MB8 LINE L1 4892 5763 -415 2456 66 0 0 chr15 21755239 21755541 -79624980 + AluY SINE Alu 1 302 -9 3475 174 42 19 chr15 21755541 21755966 -79624555 + L1MB8 LINE L1 5763 6177 -1 642 286 127 9 chr15 21755991 21756313 -79624208 - MLT1J LTR MaLR -49 462 103 1907 118 66 3 chr15 21756313 21756602 -79623919 - AluSg SINE Alu -3 307 1 27 62 0 0 chr15 21756793 21756841 -79623680 + AT_rich Low_complexity Low_complexity 1 48 0 28 48 0 0 chr15 21757492 21757534 -79622987 + AT_rich Low_complexity Low_complexity 1 42 0 338 263 103 0 chr15 21757725 21757822 -79622699 + MIR SINE MIR 42 147 -77 206 362 78 52 chr15 21758626 21758897 -79621624 - L2 LINE L2 -2 3270 2993 26 0 0 0 chr15 21759344 21759370 -79621151 + AT_rich Low_complexity Low_complexity 1 26 0 1960 118 36 4 chr15 21759754 21760034 -79620487 - AluSx SINE Alu -23 289 1 326 200 38 0 chr15 21760950 21761043 -79619478 - LTR16A1 LTR ERVL 0 457 377 2294 114 16 147 chr15 21761344 21761894 -79618627 + LTR12 LTR ERV1 1 478 -236 605 235 39 11 chr15 21761895 21762074 -79618447 - MLT1A1 LTR MaLR -176 189 6 1975 165 63 24 chr15 21762761 21762802 -79617719 - MSTA LTR MaLR 0 428 390 2072 59 4 15 chr15 21762802 21763072 -79617449 + AluY SINE Alu 39 305 -6 1975 165 63 24 chr15 21763072 21763442 -79617079 - MSTA LTR MaLR -38 390 1 208 293 26 78 chr15 21764153 21764166 -79616355 - MIR SINE MIR -32 230 218 2750 26 0 0 chr15 21764166 21764475 -79616046 - AluY SINE Alu -2 309 1 208 293 26 78 chr15 21764475 21764577 -79615944 - MIR SINE MIR -44 218 121 204 289 0 40 chr15 21764702 21764778 -79615743 - L2 LINE L2 -164 3108 3036 711 273 133 7 chr15 21764984 21765255 -79615266 - LTR40a LTR ERVL -148 371 67 1044 286 87 21 chr15 21766888 21767405 -79613116 + L1MCb LINE L1 5 555 -5490 926 190 37 9 chr15 21767515 21767731 -79612790 + L1MCb LINE L1 570 791 -5254 2277 241 115 38 chr15 21767967 21769521 -79611000 + L1MCb LINE L1 786 2637 -4108 315 213 0 0 chr15 21769524 21769604 -79610917 + (TA)n Simple_repeat Simple_repeat 1 80 0 324 300 0 0 chr15 21769605 21769695 -79610826 - L1MC4 LINE L1 -1339 6703 6614 1207 261 46 14 chr15 21769707 21770189 -79610332 + L1MCb LINE L1 2618 3114 -3450 814 244 116 7 chr15 21770190 21770465 -79610056 - L1M4 LINE L1 -1195 5449 5145 2193 256 57 19 chr15 21770478 21770541 -79609980 - L1M4 LINE L1 -1892 4752 4693 1960 131 14 7 chr15 21770541 21770832 -79609689 + AluSx SINE Alu 1 293 -19 2193 256 57 19 chr15 21770832 21771680 -79608841 - L1M4 LINE L1 -1951 4693 3806 838 261 36 63 chr15 21771681 21772175 -79608346 - L1M4 LINE L1 -5146 1396 916 906 189 71 0 chr15 21772235 21772404 -79608117 - AluSg/x SINE Alu -13 299 119 2234 131 123 5 chr15 21773392 21773775 -79606746 - MSTA LTR MaLR 0 428 1 1152 77 21 0 chr15 21774437 21774580 -79605941 + AluYb8 SINE Alu 5 150 -168 855 167 0 0 chr15 21775033 21775165 -79605356 + FLAM_C SINE Alu 2 133 0 320 212 59 12 chr15 21776339 21776424 -79604097 + MIR SINE MIR 84 172 -90 1475 185 28 11 chr15 21776718 21777081 -79603440 + Looper DNA T2_type 2 370 -1188 1021 193 106 0 chr15 21777084 21777302 -79603219 + MLT1E2 LTR MaLR 1 241 -385 19618 165 28 6 chr15 21777890 21785054 -79595467 + L1MA2 LINE L1 12 7332 -391 211 281 12 61 chr15 21785068 21785150 -79595371 + MIR SINE MIR 88 165 -97 22 56 0 0 chr15 21785175 21785211 -79595310 + AT_rich Low_complexity Low_complexity 1 36 0 3344 204 119 15 chr15 21786508 21787532 -79592989 - L1MC4a LINE L1 -1 7807 6677 414 267 37 47 chr15 21787533 21787724 -79592797 - L2 LINE L2 -26 3287 3099 236 346 13 0 chr15 21787808 21787886 -79592635 - L2 LINE L2 -239 3074 2996 917 194 26 38 chr15 21787888 21788201 -79592320 - MLT1A2 LTR MaLR 0 374 1 1030 291 143 27 chr15 21788222 21788775 -79591746 - L2 LINE L2 -337 2977 2361 204 250 29 44 chr15 21788833 21788901 -79591620 + MIR SINE MIR 195 261 -1 2150 120 3 7 chr15 21789503 21789802 -79590719 + AluSx SINE Alu 1 298 -14 1499 269 120 43 chr15 21789987 21790222 -79590299 - HAL1 LINE L1 -16 2491 2276 450 0 0 0 chr15 21790222 21790272 -79590249 + (CA)n Simple_repeat Simple_repeat 1 50 0 1499 269 120 43 chr15 21790272 21790857 -79589664 - HAL1 LINE L1 -231 2276 1738 2220 25 79 7 chr15 21790857 21791134 -79589387 + AluY SINE Alu 1 297 -14 1499 269 120 43 chr15 21791134 21791648 -79588873 - HAL1 LINE L1 -769 1738 1053 2129 110 28 0 chr15 21791651 21791941 -79588580 - AluSx SINE Alu -14 298 1 3502 152 57 42 chr15 21791944 21792721 -79587800 - L1MC1 LINE L1 -12 6321 5534 1207 282 71 63 chr15 21792751 21793387 -79587134 - HAL1 LINE L1 -1478 1029 399 504 0 0 0 chr15 21793387 21793443 -79587078 + (TC)n Simple_repeat Simple_repeat 2 57 0 180 0 0 0 chr15 21793448 21793468 -79587053 + (TG)n Simple_repeat Simple_repeat 1 20 0 1207 282 71 63 chr15 21793468 21793740 -79586781 - HAL1 LINE L1 -2111 396 108 7215 188 113 51 chr15 21794074 21794408 -79586113 - L1MC3 LINE L1 -222 7563 7251 262 212 35 12 chr15 21794408 21794493 -79586028 - MLT1F1 LTR MaLR -436 131 45 7215 188 113 51 chr15 21794493 21794950 -79585571 - L1MC3 LINE L1 -534 7251 6824 210 37 0 0 chr15 21794950 21794977 -79585544 + (CA)n Simple_repeat Simple_repeat 2 28 0 7215 188 113 51 chr15 21794977 21796214 -79584307 - L1MC3 LINE L1 -961 6824 5317 320 203 7 105 chr15 21796224 21796367 -79584154 - L1MC4 LINE L1 0 8042 7914 246 239 45 23 chr15 21796452 21796540 -79583981 - L1MC4 LINE L1 -152 7890 7801 843 254 84 4 chr15 21796643 21796918 -79583603 - L1MC4 LINE L1 -411 7631 7335 * 1678 210 75 10 chr15 21796907 21797402 -79583119 - L1MDa LINE L1 -4441 2099 1573 * 4019 221 42 36 chr15 21797397 21798677 -79581844 - L1MC3 LINE L1 -1168 4978 3691 804 249 47 16 chr15 21798683 21798940 -79581581 + MLT1C LTR MaLR 61 325 -142 336 288 80 16 chr15 21799269 21799394 -79581127 + L2 LINE L2 3178 3310 -3 842 169 14 0 chr15 21801355 21801487 -79579034 + BC200 scRNA scRNA 1 137 -63 2396 106 3 0 chr15 21801487 21801799 -79578722 + AluSp SINE Alu 1 313 0 2807 168 82 5 chr15 21804936 21805533 -79574988 - MER73 LTR ERVL -1 643 1 506 200 23 31 chr15 21806071 21806201 -79574320 + MER4D LTR ERV1 775 903 0 195 276 200 55 chr15 21806312 21806457 -79574064 + MIR3 SINE MIR 15 180 -28 890 112 7 13 chr15 21806573 21806725 -79573796 + L1MA10 LINE L1 6180 6330 -4 2389 132 38 2 chr15 21806872 21807289 -79573232 + LTR23 LTR ERV1 1 432 -5 1440 122 90 8 chr15 21807837 21808082 -79572439 - LTR23 LTR ERV1 -12 425 161 761 151 86 0 chr15 21808153 21808292 -79572229 - LTR23 LTR ERV1 -286 151 1 343 109 315 33 chr15 21808304 21808396 -79572125 + LTR48B LTR ERV1 1 118 -669 * 1129 113 20 56 chr15 21808393 21808446 -79572075 + LTR23 LTR ERV1 250 303 -134 2198 117 0 0 chr15 21808446 21808746 -79571775 + AluSc SINE Alu 1 300 -9 1129 113 20 56 chr15 21808746 21808887 -79571634 + LTR23 LTR ERV1 303 437 0 1337 255 97 28 chr15 21808935 21809445 -79571076 + LTR48B LTR ERV1 117 644 0 3586 182 22 34 chr15 21809721 21810435 -79570086 - MER50 LTR ERV1 -28 706 1 2651 174 86 24 chr15 21810472 21811040 -79569481 - LTR51 LTR ERV1 0 671 65 925 103 35 6 chr15 21811040 21811214 -79569307 + CT-rich Low_complexity Low_complexity 2 180 0 2651 174 86 24 chr15 21811214 21811227 -79569294 - LTR51 LTR ERV1 -606 65 54 4263 115 14 36 chr15 21811255 21811923 -79568598 - L1PA13 LINE L1 -23 6140 5488 927 126 0 0 chr15 21811910 21812053 -79568468 - L1PA13 LINE L1 -1792 4354 4212 * 4162 152 43 14 chr15 21812048 21812957 -79567564 - L1P4 LINE L1 -663 5498 4572 4487 224 30 49 chr15 21813059 21813890 -79566631 - L1MC/D LINE L1 -603 5639 4860 1523 164 0 85 chr15 21813890 21814207 -79566314 + AluJo SINE Alu 1 290 -22 4487 224 30 49 chr15 21814207 21815093 -79565428 - L1MC/D LINE L1 -1382 4860 3959 293 224 33 86 chr15 21815099 21815251 -79565270 + L1ME3A LINE L1 6015 6158 -12 363 304 101 22 chr15 21815305 21815621 -79564900 + HAL1 LINE L1 1431 1771 -736 1379 64 23 0 chr15 21816685 21816856 -79563665 + AluY SINE Alu 124 298 -13 1753 206 47 113 chr15 21817627 21818184 -79562337 + MER77 LTR ERV1 1 520 -85 10582 178 24 6 chr15 21818184 21819329 -79561192 + L1MA7 LINE L1 3232 4355 -1936 225 0 0 0 chr15 21819329 21819354 -79561167 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 10582 178 24 6 chr15 21819354 21821204 -79559317 + L1MA7 LINE L1 4355 6281 -10 621 321 46 29 chr15 21821213 21821736 -79558785 + HAL1b LINE L1 70 601 -747 299 259 60 0 chr15 21822143 21822259 -79558262 + Charlie8 DNA MER1_type 142 264 -2153 217 106 21 21 chr15 21822739 21822786 -79557735 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 3300 239 80 26 chr15 21823208 21824465 -79556056 + L1MDb LINE L1 358 1567 -4839 2574 229 15 28 chr15 21824462 21824633 -79555888 - L1M4 LINE L1 -814 5750 5578 * 4011 176 16 53 chr15 21824633 21825316 -79555205 - L1PA13 LINE L1 -1 6162 5505 2574 229 15 28 chr15 21825316 21825813 -79554708 - L1M4 LINE L1 -986 5578 5091 * 3753 252 67 17 chr15 21825809 21827210 -79553311 - L1MCa LINE L1 -2659 3905 2474 399 145 0 79 chr15 21827230 21827615 -79552906 + (TA)n Simple_repeat Simple_repeat 1 354 0 2329 224 167 17 chr15 21827618 21828749 -79551772 - L1MCa LINE L1 -4263 2482 1076 2110 177 47 42 chr15 21828751 21828977 -79551544 - MSTB1 LTR MaLR 0 432 209 4480 109 23 68 chr15 21828977 21829226 -79551295 - L1MA3 LINE L1 0 6305 6046 2117 104 24 3 chr15 21829226 21829515 -79551006 - AluSc SINE Alu -14 295 1 4480 109 23 68 chr15 21829515 21829862 -79550659 - L1MA3 LINE L1 -259 6046 5747 2344 99 0 3 chr15 21829862 21830164 -79550357 - AluSx SINE Alu -11 301 1 4480 109 23 68 chr15 21830164 21830317 -79550204 - L1MA3 LINE L1 -558 5747 5589 2110 177 47 42 chr15 21830317 21830520 -79550001 - MSTB1 LTR MaLR -223 209 1 1512 257 88 94 chr15 21830521 21830664 -79549857 - L1MCa LINE L1 -4969 1076 934 2042 118 13 10 chr15 21830664 21830968 -79549553 - AluSc SINE Alu -4 305 1 1512 257 88 94 chr15 21830968 21831832 -79548689 - L1MCa LINE L1 -5111 934 75 208 296 56 64 chr15 21831857 21831982 -79548539 + L2 LINE L2 2031 2154 -1160 386 22 0 0 chr15 21832201 21832246 -79548275 - tRNA-Arg-CGC tRNA tRNA -31 45 1 614 82 0 0 chr15 21832547 21832620 -79547901 - AluSg/x SINE Alu -23 287 215 2456 78 0 3 chr15 21832920 21833229 -79547292 - AluY SINE Alu -3 308 1 249 204 0 0 chr15 21833291 21833340 -79547181 + L2 LINE L2 3265 3313 0 2442 78 0 19 chr15 21834144 21834453 -79546068 - AluY SINE Alu -8 303 1 2170 100 0 13 chr15 21834917 21835216 -79545305 - AluSx SINE Alu -17 295 1 192 77 0 0 chr15 21835231 21835257 -79545264 + (A)n Simple_repeat Simple_repeat 1 26 0 583 243 46 7 chr15 21835258 21835410 -79545111 + MIR SINE MIR 104 261 -1 2297 103 3 6 chr15 21836131 21836442 -79544079 + AluSg SINE Alu 1 310 0 198 0 0 0 chr15 21837087 21837109 -79543412 + (T)n Simple_repeat Simple_repeat 1 22 0 435 262 97 7 chr15 21837420 21837565 -79542956 - MER5B DNA MER1_type -14 164 7 281 109 18 0 chr15 21838744 21838799 -79541722 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 2233 108 3 3 chr15 21838811 21839116 -79541405 - AluSg SINE Alu -5 305 1 780 218 97 24 chr15 21839570 21839735 -79540786 - AluJo SINE Alu -32 280 104 15435 195 25 13 chr15 21839860 21839887 -79540634 - L1PA13 LINE L1 -1769 5028 5003 2028 154 0 0 chr15 21839887 21840198 -79540323 - AluSx SINE Alu -1 311 1 15435 195 25 13 chr15 21840198 21840779 -79539742 - L1PA13 LINE L1 -1794 5003 4430 2360 82 0 0 chr15 21840779 21841073 -79539448 - AluY SINE Alu -17 294 1 15435 195 25 13 chr15 21841073 21843498 -79537023 - L1PA13 LINE L1 -2367 4430 1913 2224 106 0 0 chr15 21843498 21843781 -79536740 - AluSx SINE Alu -29 283 1 15435 195 25 13 chr15 21843781 21845527 -79534994 - L1PA13 LINE L1 -4884 1913 189 1559 144 158 7 chr15 21845527 21845825 -79534696 - MSTA LTR MaLR -85 343 1 1850 182 9 6 chr15 21846121 21846456 -79534065 + L1MC1 LINE L1 5991 6326 -7 211 259 19 0 chr15 21846755 21846809 -79533712 - MIR3 SINE MIR -21 187 133 276 71 0 0 chr15 21846915 21846957 -79533564 - LTR23 LTR ERV1 -5 432 391 1325 188 4 9 chr15 21846957 21847186 -79533335 + AluJo SINE Alu 1 228 -84 1085 143 36 15 chr15 21847187 21847383 -79533138 - LTR56 LTR ERV1 -245 200 1 1587 208 0 16 chr15 21847724 21848032 -79532489 - AluJo SINE Alu -9 303 1 2520 163 71 2 chr15 21848234 21848669 -79531852 - LTR24 LTR ERV1 -2 465 1 1873 213 85 30 chr15 21849162 21849599 -79530922 - LOR1b LTR ERV1 0 461 1 684 303 40 23 chr15 21850631 21850978 -79529543 - MLT1J LTR MaLR -145 366 14 2681 148 7 2 chr15 21851109 21851548 -79528973 + MER41B LTR ERV1 157 597 -38 4116 133 98 3 chr15 21852093 21852749 -79527772 - LTR62 LTR ERVK -1 718 1 394 291 102 5 chr15 21852967 21853163 -79527358 + L2 LINE L2 1769 1983 -1331 232 303 141 28 chr15 21853166 21853417 -79527104 + L2 LINE L2 2964 3247 -25 249 370 7 14 chr15 21853814 21853960 -79526561 - MARNA DNA Mariner -355 231 87 653 152 0 0 chr15 21855917 21856009 -79524512 - AluJ/FLAM SINE Alu -219 93 2 240 283 168 9 chr15 21856552 21856665 -79523856 - LTR33 LTR ERVL 0 521 391 260 257 79 10 chr15 21856753 21856854 -79523667 - LTR33 LTR ERVL -253 268 161 27 73 0 0 chr15 21857637 21857692 -79522829 + AT_rich Low_complexity Low_complexity 1 55 0 1162 306 78 35 chr15 21857707 21858286 -79522235 - HERVL LTR ERVL -2784 2870 2267 328 339 69 16 chr15 21858559 21858748 -79521773 - HERVL LTR ERVL -3068 1928 1730 265 188 16 16 chr15 21859079 21859143 -79521378 + L1MC2 LINE L1 1127 1190 -5233 259 163 0 0 chr15 21859195 21859238 -79521283 + L1M4 LINE L1 3906 3948 -2198 1046 17 0 0 chr15 21859277 21859394 -79521127 - AluY SINE Alu -17 294 178 524 252 63 43 chr15 21859398 21859958 -79520563 + L1MC2 LINE L1 1283 2190 -4751 * 927 226 84 70 chr15 21859954 21860440 -79520081 + L1MC2 LINE L1 3252 3744 -3197 424 277 0 0 chr15 21860443 21860537 -79519984 + L1MC2 LINE L1 4524 4617 -2324 5507 185 53 50 chr15 21860541 21862888 -79517633 + L1MC2 LINE L1 4678 7017 -122 2129 97 7 0 chr15 21862888 21863166 -79517355 + AluSp SINE Alu 1 280 -33 252 0 0 0 chr15 21863168 21863196 -79517325 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5507 185 53 50 chr15 21863196 21863323 -79517198 + L1MC2 LINE L1 7017 7139 0 1255 249 50 38 chr15 21863321 21863904 -79516617 + L1M4 LINE L1 2933 3522 -2624 * 344 250 56 62 chr15 21863897 21864041 -79516480 + L1ME1 LINE L1 5851 5993 -173 * 216 250 0 0 chr15 21864169 21864217 -79516304 + MIR SINE MIR 86 133 -129 1362 133 73 4 chr15 21865228 21865476 -79515045 - L1MA5 LINE L1 0 6300 6036 339 25 0 0 chr15 21865495 21865535 -79514986 + (TA)n Simple_repeat Simple_repeat 2 41 0 289 348 37 15 chr15 21865810 21865945 -79514576 - MIR SINE MIR -90 172 35 735 256 26 30 chr15 21866222 21866407 -79514114 + MIR SINE MIR 11 196 -66 2020 96 52 4 chr15 21866407 21866677 -79513844 - AluSc SINE Alu -26 283 1 735 256 26 30 chr15 21866677 21866725 -79513796 + MIR SINE MIR 196 243 -19 398 320 31 8 chr15 21869911 21870039 -79510482 + MIR3 SINE MIR 51 181 -27 241 278 160 11 chr15 21870560 21870693 -79509828 + MIR SINE MIR 36 188 -68 216 300 92 8 chr15 21870776 21870896 -79509625 + MIR SINE MIR 53 182 -80 275 236 164 55 chr15 21872849 21872959 -79507562 + L2 LINE L2 3192 3313 0 3133 248 49 42 chr15 21873270 21874469 -79506052 + L1MC4 LINE L1 2724 3931 -2215 2390 227 73 61 chr15 21874575 21875383 -79505138 + L1MC4 LINE L1 4362 4696 -1450 2341 100 3 3 chr15 21875383 21875693 -79504828 + AluY SINE Alu 1 310 -1 2390 227 73 61 chr15 21875693 21876400 -79504121 + L1MC4 LINE L1 4696 5393 -753 359 262 37 47 chr15 21876420 21876527 -79503994 - MER5A DNA MER1_type -68 121 16 487 273 51 23 chr15 21876874 21877050 -79503471 + MIR SINE MIR 82 262 0 729 178 0 0 chr15 21877590 21877697 -79502824 - AluJb SINE Alu -69 243 137 1167 186 0 0 chr15 21877777 21877970 -79502551 - MER3 DNA MER1_type -6 203 11 2098 165 143 16 chr15 21880617 21881065 -79499456 + MLT1D LTR MaLR 1 505 0 218 240 0 60 chr15 21881284 21881334 -79499187 + MIR SINE MIR 27 73 -135 491 174 24 30 chr15 21881756 21881923 -79498598 + GA-rich Low_complexity Low_complexity 4 169 0 728 98 0 72 chr15 21881925 21882118 -79498403 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 521 179 14 14 chr15 21882119 21882259 -79498262 + GA-rich Low_complexity Low_complexity 2 141 0 1811 168 153 32 chr15 21883687 21884098 -79496423 + LOR1b LTR ERV1 1 461 0 2665 104 0 57 chr15 21886264 21886647 -79493874 + THE1B LTR MaLR 4 364 0 1505 136 13 88 chr15 21886679 21886996 -79493525 + L1MA10 LINE L1 6040 6332 -2 276 100 0 0 chr15 21887331 21887371 -79493150 + (TG)n Simple_repeat Simple_repeat 1 40 0 21 36 0 0 chr15 21887448 21887476 -79493045 + AT_rich Low_complexity Low_complexity 1 28 0 3038 261 52 37 chr15 21888458 21889257 -79491264 - L2 LINE L2 0 3313 2496 1531 168 53 43 chr15 21889257 21889560 -79490961 - AluJo SINE Alu -6 306 1 3038 261 52 37 chr15 21889560 21890055 -79490466 - L2 LINE L2 -817 2496 2010 232 248 37 55 chr15 21890180 21890289 -79490232 - MIR SINE MIR -54 208 102 2612 50 0 0 chr15 21890289 21890592 -79489929 + AluY SINE Alu 1 303 -8 534 222 85 85 chr15 21890993 21891241 -79489280 + MIR SINE MIR 2 249 -13 615 239 56 0 chr15 21892462 21892642 -79487879 + HAL1 LINE L1 44 233 -2274 3259 239 109 68 chr15 21892706 21893577 -79486944 + HAL1 LINE L1 644 1478 -1029 2201 119 0 6 chr15 21893577 21893888 -79486633 + AluSc SINE Alu 1 309 0 3259 239 109 68 chr15 21893888 21894602 -79485919 + HAL1 LINE L1 1478 2313 -194 1990 150 0 0 chr15 21894602 21894902 -79485619 + AluSp SINE Alu 1 300 -13 3259 239 109 68 chr15 21894902 21895106 -79485415 + HAL1 LINE L1 2313 2507 0 812 274 4 35 chr15 21895465 21895724 -79484797 + L1MB8 LINE L1 5925 6175 -3 2701 42 0 0 chr15 21896356 21896667 -79483854 - AluY SINE Alu 0 311 1 298 333 0 0 chr15 21897074 21897233 -79483288 + (CATCC)n Simple_repeat Simple_repeat 3 161 0 197 320 156 29 chr15 21897379 21897623 -79482898 + L2 LINE L2 1638 1912 -1402 270 364 128 17 chr15 21897849 21898209 -79482312 + L2 LINE L2 2290 2689 -625 219 319 52 44 chr15 21898537 21898672 -79481849 + L2 LINE L2 2948 3083 -189 2592 65 0 0 chr15 21898781 21899091 -79481430 - AluY SINE Alu -1 310 1 3839 168 18 3 chr15 21950305 21951408 -79429113 + L1PBa LINE L1 2172 3349 -3513 1677 201 65 56 chr15 21952681 21953129 -79427392 + MLT1D LTR MaLR 54 505 0 286 211 0 13 chr15 21953869 21953945 -79426576 - L1ME4a LINE L1 0 6121 6047 1585 243 81 26 chr15 21954191 21954648 -79425873 - MLT1J LTR MaLR -25 486 5 1146 190 164 0 chr15 21955299 21955811 -79424710 + L1MC4 LINE L1 7414 8037 -5 5417 48 1 0 chr15 21956717 21957400 -79423121 - L1P LINE L1 -893 5253 4570 4422 41 5 2 chr15 21957399 21957954 -79422567 + L1P LINE L1 3242 3798 -2348 * 266 322 33 0 chr15 21958059 21958149 -79422372 + MLT1L LTR MaLR 299 391 -224 2988 135 9 2 chr15 21959099 21959530 -79420991 - MER57B LTR ERV1 0 434 1 1541 108 129 0 chr15 21959531 21959763 -79420758 - MER57B-int LTR ERV1 -2 7535 7274 748 144 24 8 chr15 21959763 21959888 -79420633 - LTR54B LTR ERV1 -369 129 3 2946 94 3 0 chr15 21960335 21960698 -79419823 + THE1B LTR MaLR 1 364 0 670 257 19 27 chr15 21960894 21961151 -79419370 - L1M4 LINE L1 -3016 3130 2876 553 217 63 57 chr15 21961332 21961507 -79419014 - MER5B DNA MER1_type 0 178 3 566 263 27 21 chr15 21963207 21963393 -79417128 + MLT1A1 LTR MaLR 179 365 0 324 260 48 10 chr15 21963393 21963497 -79417024 + MIR SINE MIR 155 262 0 4605 236 35 22 chr15 21964666 21965162 -79415359 + L1MB3 LINE L1 3056 3544 -2602 2229 91 10 0 chr15 21965162 21965458 -79415063 - AluY SINE Alu -12 299 1 4605 236 35 22 chr15 21965458 21966353 -79414168 + L1MB3 LINE L1 3544 4464 -1682 508 143 0 0 chr15 21966512 21966582 -79413939 - AluSq/x SINE Alu -197 116 47 587 128 0 11 chr15 21966915 21967009 -79413512 - LTR12 LTR ERV1 -4 710 618 368 159 0 0 chr15 21967019 21967088 -79413433 - LTR30 LTR ERV1 -102 620 552 758 152 15 28 chr15 21967204 21967360 -79413161 - LTR12 LTR ERV1 -480 1683 94 247 250 0 0 chr15 21967364 21967416 -79413105 - LTR30 LTR ERV1 -670 52 1 388 295 83 26 chr15 21967632 21967825 -79412696 + L2 LINE L2 1849 2052 -1262 433 330 77 0 chr15 21968478 21968660 -79411861 + MIR SINE MIR 2 197 -65 392 124 21 103 chr15 21968665 21968762 -79411759 - LOR1a LTR ERV1 0 497 409 234 0 0 0 chr15 21968762 21968788 -79411733 + (T)n Simple_repeat Simple_repeat 1 26 0 1366 216 77 61 chr15 21970196 21970640 -79409881 - MLT1C LTR MaLR -5 462 12 1247 237 158 54 chr15 21971248 21971806 -79408715 + MLT1E3 LTR MaLR 9 624 0 2071 178 31 3 chr15 21972343 21972698 -79407823 - MLT1A1 LTR MaLR 0 365 1 4820 180 24 30 chr15 21973171 21974059 -79406462 + L1MB3 LINE L1 4442 5333 -850 2528 66 0 3 chr15 21974059 21974361 -79406160 + AluY SINE Alu 1 301 -10 4820 180 24 30 chr15 21974361 21975207 -79405314 + L1MB3 LINE L1 5333 6183 0 1050 241 63 62 chr15 21978072 21978313 -79402208 + L1MEc LINE L1 2087 2326 -3889 2745 197 12 59 chr15 21978313 21978978 -79401543 - LTR27 LTR ERV1 0 636 3 1050 241 63 62 chr15 21978978 21979485 -79401036 + L1MEc LINE L1 2326 2885 -3330 5842 130 15 29 chr15 21979587 21979985 -79400536 - L1PB1 LINE L1 -1 6150 5748 369 109 0 0 chr15 21979985 21980040 -79400481 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 5842 130 15 29 chr15 21980040 21980874 -79399647 - L1PB1 LINE L1 -403 5748 4934 3852 217 24 18 chr15 21980889 21981879 -79398642 - L1M4 LINE L1 -743 5403 4435 1821 153 7 17 chr15 21981879 21982180 -79398341 - AluJo SINE Alu -14 298 1 3852 217 24 18 chr15 21982180 21982250 -79398271 - L1M4 LINE L1 -1711 4435 4367 400 233 107 0 chr15 21982587 21982690 -79397831 + MER53 DNA DNA 1 114 -75 489 126 0 135 chr15 21983502 21983613 -79396908 - L1MA6 LINE L1 -317 5983 5888 1484 178 16 42 chr15 21983613 21983798 -79396723 + L1MA6 LINE L1 5993 6168 -132 2390 95 0 0 chr15 21983798 21984102 -79396419 + AluSc SINE Alu 1 304 -5 1484 178 16 42 chr15 21984102 21984225 -79396296 + L1MA6 LINE L1 6168 6293 -7 288 272 107 19 chr15 21984382 21984485 -79396036 + L2 LINE L2 3198 3309 -4 2479 74 0 0 chr15 21984511 21984807 -79395714 + AluY SINE Alu 1 296 -15 202 182 0 0 chr15 21984817 21984850 -79395671 + (CA)n Simple_repeat Simple_repeat 2 34 0 1678 188 3 25 chr15 21985717 21986036 -79394485 + AluJo SINE Alu 1 312 0 2334 162 17 2 chr15 21986308 21986715 -79393806 + L1MC3 LINE L1 6686 7098 -687 234 231 19 0 chr15 21986716 21986768 -79393753 + MLT1F1 LTR MaLR 37 89 -478 194 329 25 13 chr15 21987259 21987338 -79393183 - L2 LINE L2 -3 3269 3190 3091 155 53 87 chr15 21987338 21988049 -79392472 + L1M4c LINE L1 12 698 -5686 283 65 43 22 chr15 21988072 21988118 -79392403 + AluSq/x SINE Alu 89 135 -168 2388 80 3 3 chr15 21988118 21988419 -79392102 + AluY SINE Alu 1 301 -10 1910 121 26 42 chr15 21988428 21988734 -79391787 + AluSx SINE Alu 2 302 -10 7208 153 21 17 chr15 21988734 21990057 -79390464 + L1M4c LINE L1 892 2219 -4165 2943 153 45 60 chr15 21990162 21990361 -79390160 - L1MA9 LINE L1 -314 5998 5797 1430 176 0 8 chr15 21990361 21990599 -79389922 + MER46A DNA MER2_type 1 236 0 2943 153 45 60 chr15 21990599 21990612 -79389909 - L1MA9 LINE L1 -515 5797 5785 2251 108 0 10 chr15 21990612 21990926 -79389595 - AluY SINE Alu 0 311 1 2943 153 45 60 chr15 21990926 21991231 -79389290 - L1MA9 LINE L1 -527 5785 5489 2287 85 7 3 chr15 21991231 21991526 -79388995 - AluSq SINE Alu -17 296 1 2943 153 45 60 chr15 21991526 21991634 -79388887 - L1MA9 LINE L1 -823 5489 5381 394 272 76 25 chr15 21992195 21992353 -79388168 - MLT1K LTR MaLR -26 562 397 1228 226 6 21 chr15 21992490 21992828 -79387693 - L1MA9 LINE L1 -745 5401 5095 * 6118 251 70 31 chr15 21992816 21995504 -79385017 - L1M4b LINE L1 -1754 5203 2480 1726 241 85 56 chr15 21995664 21996878 -79383643 - L1M4b LINE L1 -4536 2423 1205 261 188 42 0 chr15 21997078 21997126 -79383395 - L1M4b LINE L1 -5632 1227 1178 2880 264 50 39 chr15 21997298 21998277 -79382244 - L1M4b LINE L1 -5635 1224 11 1685 155 83 44 chr15 21998287 21998649 -79381872 + LOR1b LTR ERV1 1 376 -85 2268 98 3 3 chr15 21998651 21998958 -79381563 + AluY SINE Alu 1 307 -4 21 57 0 0 chr15 21999156 21999191 -79381330 + AT_rich Low_complexity Low_complexity 1 35 0 1624 151 0 0 chr15 21999193 21999432 -79381089 + AluY SINE Alu 1 239 -72 1806 87 56 12 chr15 22000500 22000752 -79379769 + AluSg SINE Alu 32 294 -16 2840 105 11 3 chr15 22000790 22001162 -79379359 - THE1C LTR MaLR 0 375 1 183 361 148 0 chr15 22003109 22003231 -79377290 + L3 LINE CR1 1150 1289 -288 244 257 142 26 chr15 22003290 22003403 -79377118 - MIR SINE MIR -62 200 75 6653 67 1 2 chr15 22003458 22004307 -79376214 - L1PA8 LINE L1 -4 6168 5321 2950 115 2 2 chr15 22004305 22004747 -79375774 + L1P LINE L1 4917 5358 -788 * 1855 208 79 24 chr15 22004964 22005420 -79375101 - MLT1D LTR MaLR 0 505 25 1112 264 35 9 chr15 22006865 22007180 -79373341 + MER46C DNA MER2_type 15 337 -1 409 185 76 0 chr15 22009314 22009406 -79371115 - MER53 DNA DNA -74 115 17 * 426 131 107 0 chr15 22009328 22009412 -79371109 + MER53 DNA DNA 96 188 -1 1860 117 15 0 chr15 22009897 22010170 -79370351 - AluSc SINE Alu -16 293 17 315 204 114 0 chr15 22010669 22010757 -79369764 - MIR SINE MIR -48 214 117 410 154 13 0 chr15 22010804 22010882 -79369639 + (CA)n Simple_repeat Simple_repeat 2 80 0 180 114 171 0 chr15 22011440 22011475 -79369046 + L3 LINE CR1 1360 1400 -177 216 288 0 17 chr15 22011603 22011662 -79368859 + L2 LINE L2 2232 2289 -1025 2077 123 18 24 chr15 22012235 22012337 -79368184 - L1MA5A LINE L1 -6 6291 6190 5438 63 17 5 chr15 22012337 22012989 -79367532 - PABL_A LTR ERV1 0 660 1 2077 123 18 24 chr15 22012989 22013220 -79367301 - L1MA5A LINE L1 -107 6190 5960 652 194 0 0 chr15 22013229 22013337 -79367184 - AluSc SINE Alu -53 256 149 1205 123 4 111 chr15 22013337 22013502 -79367019 - L1MA5A LINE L1 -325 5972 5842 1729 191 0 10 chr15 22013502 22013801 -79366720 - AluJb SINE Alu -16 296 1 1205 123 4 111 chr15 22013801 22013887 -79366634 - L1MA5A LINE L1 -455 5842 5748 1314 241 70 47 chr15 22013954 22014381 -79366140 + L2 LINE L2 2310 2746 -568 227 230 40 14 chr15 22014388 22014462 -79366059 - MLT1I LTR MaLR -5 404 329 265 254 32 0 chr15 22014725 22014788 -79365733 + L2 LINE L2 2729 2793 -521 2037 184 62 14 chr15 22014882 22015317 -79365204 - L1MD2 LINE L1 -2 6357 5902 405 145 48 48 chr15 22016235 22016309 -79364212 + MLT1A1 LTR MaLR 1 74 -291 667 165 0 0 chr15 22016309 22016412 -79364109 + MER46A DNA MER2_type 2 104 -132 1226 169 0 60 chr15 22016412 22016678 -79363843 + L1MA4 LINE L1 5614 5863 -437 834 117 73 29 chr15 22016678 22016815 -79363706 + MER46A DNA MER2_type 94 236 0 * 1687 178 3 20 chr15 22016815 22017118 -79363403 + MLT1A1 LTR MaLR 68 365 0 308 283 0 38 chr15 22017118 22017224 -79363297 + MER5B DNA MER1_type 77 178 0 317 331 80 0 chr15 22018863 22019014 -79361507 - MIR SINE MIR -10 252 90 2275 76 13 10 chr15 22019162 22019466 -79361055 + AluSq SINE Alu 1 305 -8 5068 124 11 0 chr15 22019659 22020386 -79360135 - L1MA5A LINE L1 -11 6286 5552 199 221 257 18 chr15 22020521 22020634 -79359887 + MER5A DNA MER1_type 48 187 -2 * 459 204 10 10 chr15 22020542 22020645 -79359876 - MER5A DNA MER1_type -80 109 7 1124 163 5 0 chr15 22020763 22020947 -79359574 + MLT1C LTR MaLR 1 185 -282 2156 99 3 13 chr15 22020947 22021250 -79359271 + AluSg SINE Alu 1 300 -10 270 256 12 12 chr15 22022376 22022458 -79358063 + (TATATG)n Simple_repeat Simple_repeat 5 86 0 191 309 0 0 chr15 22022702 22022757 -79357764 - MIR3 SINE MIR -40 168 114 420 210 86 74 chr15 22023137 22023299 -79357222 - MER5B DNA MER1_type -14 164 1 211 239 80 0 chr15 22024502 22024615 -79355906 + (TCTA)n Simple_repeat Simple_repeat 2 123 0 24 0 0 0 chr15 22024904 22024928 -79355593 + AT_rich Low_complexity Low_complexity 1 24 0 2307 113 0 3 chr15 22025240 22025551 -79354970 + AluSx SINE Alu 1 310 -2 6794 26 1 0 chr15 22026107 22026847 -79353674 + L1PA5 LINE L1 5414 6154 0 1008 247 145 41 chr15 22027007 22027192 -79353329 - L1MC4a LINE L1 -1873 5935 5771 2150 111 7 0 chr15 22027192 22027480 -79353041 - AluSc SINE Alu -19 290 1 1008 247 145 41 chr15 22027480 22027906 -79352615 - L1MC4a LINE L1 -2037 5771 5260 384 327 151 16 chr15 22027926 22028244 -79352277 - L1MC4a LINE L1 -906 5240 4880 1574 224 63 104 chr15 22028273 22028859 -79351662 + MLT1E LTR MaLR 32 593 0 333 274 107 57 chr15 22028881 22029162 -79351359 - L1MC4a LINE L1 -1299 4847 4553 230 286 51 78 chr15 22029447 22029664 -79350857 - L1MC4a LINE L1 -2254 3892 3682 234 39 0 78 chr15 22029809 22029860 -79350661 + (TTTTC)n Simple_repeat Simple_repeat 3 49 0 2326 109 3 0 chr15 22029941 22030253 -79350268 + AluSq SINE Alu 1 313 0 21 82 0 0 chr15 22030516 22030565 -79349956 + AT_rich Low_complexity Low_complexity 1 49 0 282 94 47 0 chr15 22031274 22031338 -79349183 + (TA)n Simple_repeat Simple_repeat 2 68 0 2333 66 0 7 chr15 22031341 22031629 -79348892 - AluSc SINE Alu -23 286 1 21 36 0 0 chr15 22031734 22031762 -79348759 + AT_rich Low_complexity Low_complexity 1 28 0 1792 97 0 8 chr15 22032085 22032322 -79348199 - AluSg/x SINE Alu 0 312 78 303 325 46 31 chr15 22032645 22032839 -79347682 - HAL1b LINE L1 -1100 248 52 554 260 39 15 chr15 22033541 22033759 -79346762 + MLT1E-int LTR MaLR 125 465 -906 2133 96 0 0 chr15 22033925 22034197 -79346324 + AluSc SINE Alu 1 272 -37 180 0 0 0 chr15 22034202 22034222 -79346299 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 29 47 0 0 chr15 22034620 22034663 -79345858 + AT_rich Low_complexity Low_complexity 1 43 0 210 143 0 0 chr15 22034688 22034723 -79345798 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 184 333 171 0 chr15 22034877 22035000 -79345521 + MIR SINE MIR 50 193 -69 209 228 51 51 chr15 22035518 22035597 -79344924 + MER5B DNA MER1_type 95 173 -5 1770 228 73 5 chr15 22036311 22036679 -79343842 + MSTD LTR MaLR 4 396 0 2172 99 39 0 chr15 22037049 22037332 -79343189 - AluSx SINE Alu -18 294 1 25 75 0 0 chr15 22037722 22037775 -79342746 + AT_rich Low_complexity Low_complexity 1 53 0 321 351 12 23 chr15 22038457 22038628 -79341893 + MIR SINE MIR 37 205 -57 739 213 0 0 chr15 22039243 22039388 -79341133 + MER89-int LTR ERV1 7000 7124 -413 1127 142 139 59 chr15 22039388 22039817 -79340704 + LTR54B LTR ERV1 1 496 -2 289 0 49 0 chr15 22040103 22040144 -79340377 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2044 129 0 0 chr15 22040145 22040425 -79340096 - AluSx SINE Alu -32 280 1 477 220 47 27 chr15 22040461 22040611 -79339910 + LTR54B-int LTR ERV1 329 481 -7056 386 272 0 0 chr15 22040819 22040900 -79339621 + MER89-int LTR ERV1 2441 2521 -3810 1236 173 36 9 chr15 22040908 22041133 -79339388 - MER46A DNA MER2_type 0 236 6 257 271 0 0 chr15 22041138 22041197 -79339324 + MER89-int LTR ERV1 552 610 -6927 * 360 179 80 27 chr15 22041195 22041307 -79339214 + MER89-int LTR ERV1 712 829 -6708 525 184 117 17 chr15 22041309 22041488 -79339033 + LTR54B LTR ERV1 296 492 -6 445 250 40 32 chr15 22041994 22042118 -79338403 - MLT1I LTR MaLR -204 205 81 481 229 29 0 chr15 22043943 22044048 -79336473 - MLT1I LTR MaLR -8 401 294 2223 107 10 0 chr15 22044379 22044677 -79335844 - AluSx SINE Alu -11 301 1 2198 80 0 11 chr15 22045460 22045776 -79334745 + AluY SINE Alu 1 313 0 195 315 154 15 chr15 22046207 22046337 -79334184 - L2 LINE L2 -7 3306 3159 333 216 84 60 chr15 22046448 22046615 -79333906 + MLT1J1 LTR MaLR 42 212 -234 585 213 24 53 chr15 22046672 22046841 -79333680 + MLT1A2 LTR MaLR 4 167 -207 2405 107 0 0 chr15 22046841 22047151 -79333370 + AluSx SINE Alu 1 310 -2 2111 163 69 15 chr15 22047187 22047591 -79332930 + MSTB LTR MaLR 1 426 0 275 313 131 32 chr15 22047632 22048155 -79332366 + L2 LINE L2 2695 3271 -42 1475 236 35 75 chr15 22048473 22048994 -79331527 - MLT1D LTR MaLR -1 504 5 2155 107 3 7 chr15 22049089 22049380 -79331141 - AluSx SINE Alu -22 290 1 262 337 49 10 chr15 22050744 22050847 -79329674 + MER89-int LTR ERV1 6244 6455 -345 301 248 79 10 chr15 22050847 22050948 -79329573 + HERVL40 LTR ERVL 2758 2865 -172 540 256 8 0 chr15 22050959 22051076 -79329445 + HERVL40 LTR ERVL 5411 5528 -2 318 221 32 11 chr15 22051078 22051173 -79329348 + LTR40a LTR ERVL 1 97 -422 836 244 0 6 chr15 22051173 22051345 -79329176 - FRAM SINE Alu -5 171 1 1147 253 19 41 chr15 22051368 22051736 -79328785 + LTR40b LTR ERVL 102 461 -1 1265 151 0 15 chr15 22052508 22052707 -79327814 - AluSg/x SINE Alu -4 308 113 2563 241 73 11 chr15 22052756 22053371 -79327150 + MER82 DNA MER2_type 1 653 0 233 320 57 33 chr15 22054401 22054523 -79325998 - L2 LINE L2 -10 3262 3138 2019 140 0 32 chr15 22054551 22054865 -79325656 + AluSx SINE Alu 1 304 -8 28 48 0 0 chr15 22055871 22055913 -79324608 + AT_rich Low_complexity Low_complexity 1 42 0 4951 98 62 28 chr15 22056795 22057590 -79322931 - L1PA7 LINE L1 0 6154 5333 192 347 48 60 chr15 22057614 22057633 -79322888 + MIR SINE MIR 81 99 -163 2343 191 65 63 chr15 22057633 22058236 -79322285 - MER77 LTR ERV1 0 605 2 192 347 48 60 chr15 22058236 22058383 -79322138 + MIR SINE MIR 99 245 -17 1676 224 36 50 chr15 22058427 22058868 -79321653 + L1MDa LINE L1 185 619 -5921 270 231 0 0 chr15 22058879 22058931 -79321590 + LTR30 LTR ERV1 1 52 -670 2162 170 13 66 chr15 22058931 22059384 -79321137 + LTR12 LTR ERV1 53 481 -233 492 189 168 35 chr15 22059413 22059556 -79320965 + L1MDa LINE L1 661 822 -5718 762 285 95 3 chr15 22059649 22059954 -79320567 + L1MDa LINE L1 1570 1902 -4638 667 213 158 0 chr15 22060429 22060593 -79319928 - MER3 DNA MER1_type -18 191 2 471 297 22 11 chr15 22061625 22061807 -79318714 - MER5A DNA MER1_type -2 187 4 197 318 47 24 chr15 22061872 22061957 -79318564 + MIR SINE MIR 20 106 -156 202 214 14 14 chr15 22062177 22062247 -79318274 + CT-rich Low_complexity Low_complexity 4 73 0 1208 162 112 35 chr15 22063095 22063354 -79317167 - AluJo SINE Alu -33 279 1 858 136 52 7 chr15 22063540 22063694 -79316827 - L1MA10 LINE L1 0 6334 6174 546 215 0 0 chr15 22063695 22063825 -79316696 + (TG)n Simple_repeat Simple_repeat 2 131 0 770 121 121 0 chr15 22063826 22063958 -79316563 - L1MB1 LINE L1 -23 6166 6019 1571 164 37 3 chr15 22064409 22064708 -79315813 - L1MA9 LINE L1 -10 6302 5994 1805 188 6 11 chr15 22066837 22067188 -79313333 - L1MA7 LINE L1 -152 6139 5791 298 155 216 41 chr15 22067185 22067282 -79313239 + L1MA7 LINE L1 6171 6284 -7 * 360 233 23 108 chr15 22069147 22069323 -79311198 - MER103 DNA DNA -1 165 5 751 205 0 0 chr15 22069394 22069521 -79311000 + FLAM_A SINE Alu 2 128 -5 2192 142 70 28 chr15 22069750 22070180 -79310341 + LTR29 LTR ERV1 1 448 -174 2397 81 3 3 chr15 22070220 22070529 -79309992 + AluY SINE Alu 1 309 -2 1343 165 78 109 chr15 22070568 22071175 -79309346 + MER4C LTR ERV1 1 464 -1 1991 150 35 30 chr15 22072079 22072452 -79308069 + THE1C LTR MaLR 1 375 0 2157 209 25 66 chr15 22072793 22073357 -79307164 + MER87 LTR ERV1 1 541 0 1432 200 118 46 chr15 22073810 22074330 -79306191 + LTR48 LTR ERV1 1 739 -48 21 0 0 0 chr15 22075246 22075267 -79305254 + AT_rich Low_complexity Low_complexity 1 21 0 285 333 34 14 chr15 22075810 22075957 -79304564 - MIR SINE MIR 0 262 113 1683 190 7 0 chr15 22077263 22077542 -79302979 - AluJb SINE Alu -31 281 1 1144 158 0 0 chr15 22077891 22078068 -79302453 + FRAM SINE Alu 1 169 -7 189 0 0 0 chr15 22081271 22081292 -79299229 + (T)n Simple_repeat Simple_repeat 1 21 0 298 155 216 41 chr15 22083310 22083407 -79297114 - L1MA7 LINE L1 -7 6284 6171 * 1805 188 6 11 chr15 22083404 22083755 -79296766 + L1MA7 LINE L1 5791 6139 -152 1641 154 37 0 chr15 22085884 22086182 -79294339 + L1MA9 LINE L1 5994 6302 -10 432 289 20 13 chr15 22087106 22087255 -79293266 + MIR SINE MIR 48 197 -65 2154 64 34 30 chr15 22087765 22088061 -79292460 - AluY SINE Alu -14 297 1 240 344 79 20 chr15 22088631 22088884 -79291637 - L2 LINE L2 -198 3074 2807 1983 123 7 30 chr15 22088933 22089233 -79291288 - AluSg SINE Alu -17 293 1 189 147 0 0 chr15 22091327 22091361 -79289160 + (TTCTCC)n Simple_repeat Simple_repeat 3 36 0 220 137 39 0 chr15 22091401 22091452 -79289069 + CT-rich Low_complexity Low_complexity 2 54 0 351 290 36 22 chr15 22091494 22091632 -79288889 - L2 LINE L2 -7 3265 3126 407 305 31 0 chr15 22091771 22091899 -79288622 - MIR SINE MIR -43 219 88 46 0 0 0 chr15 22092230 22092276 -79288245 + GC_rich Low_complexity Low_complexity 1 46 0 4187 87 1 96 chr15 22092391 22093140 -79287381 + MER57-int LTR ERV1 4009 4686 -2851 3224 180 9 24 chr15 22093140 22093806 -79286715 + LTR8 LTR ERV1 1 656 -35 23 33 0 0 chr15 22093929 22093959 -79286562 + AT_rich Low_complexity Low_complexity 1 30 0 1128 134 6 0 chr15 22093998 22094169 -79286352 - AluSq SINE Alu -19 294 123 761 67 0 0 chr15 22094191 22094296 -79286225 - AluY SINE Alu 0 311 207 891 97 0 0 chr15 22094296 22094409 -79286112 - AluSp SINE Alu -200 113 1 192 330 21 32 chr15 22095413 22095507 -79285014 + MER5A DNA MER1_type 61 153 -36 305 257 77 74 chr15 22096032 22096885 -79283636 - L1MC4 LINE L1 0 8042 7239 1635 174 10 43 chr15 22096885 22097190 -79283331 - AluJo SINE Alu -17 295 1 305 257 77 74 chr15 22097190 22097422 -79283099 - L1MC4 LINE L1 -803 7239 7009 2214 152 26 26 chr15 22097442 22097863 -79282658 + L1MB3 LINE L1 5762 6182 -1 653 246 100 55 chr15 22097880 22098351 -79282170 - MLT1G1 LTR MaLR -28 562 46 953 268 116 11 chr15 22098449 22098804 -79281717 - L1MC4a LINE L1 -870 6938 6547 847 177 0 0 chr15 22098804 22098934 -79281587 + AluJb SINE Alu 1 130 -182 24 0 0 0 chr15 22098934 22098958 -79281563 + AT_rich Low_complexity Low_complexity 1 24 0 434 296 72 58 chr15 22098964 22099342 -79281179 - L1MC4a LINE L1 -1283 6525 6139 413 75 0 15 chr15 22099342 22099409 -79281112 + (CA)n Simple_repeat Simple_repeat 2 67 0 434 296 72 58 chr15 22099409 22099476 -79281045 - L1MC4a LINE L1 -1669 6139 6074 2462 172 19 2 chr15 22100235 22100654 -79279867 + MSTB LTR MaLR 1 426 0 1650 151 155 3 chr15 22101317 22101634 -79278887 + MLT1A1 LTR MaLR 1 365 0 2370 109 0 0 chr15 22101834 22102145 -79278376 - AluSq SINE Alu -2 311 1 199 243 57 0 chr15 22102197 22102267 -79278254 + L2 LINE L2 1949 2022 -1292 1994 119 7 52 chr15 22103333 22103643 -79276878 + AluSq SINE Alu 1 296 -17 268 340 79 20 chr15 22103692 22103945 -79276576 + L2 LINE L2 2807 3074 -198 2327 58 34 20 chr15 22104515 22104810 -79275711 + AluY SINE Alu 1 299 -12 432 289 20 13 chr15 22105320 22105469 -79275052 - MIR SINE MIR -65 197 48 1787 181 17 31 chr15 22106259 22106619 -79273902 + MLT1A1 LTR MaLR 11 365 0 207 176 39 20 chr15 22106628 22106679 -79273842 + GA-rich Low_complexity Low_complexity 4 55 0 288 284 74 29 chr15 22107602 22107743 -79272778 + MIR SINE MIR 13 154 -65 193 160 20 20 chr15 22107753 22107803 -79272718 + (TA)n Simple_repeat Simple_repeat 2 51 0 27077 146 11 19 chr15 22108433 22113439 -79267082 + L1PA10 LINE L1 554 5587 -874 2138 144 49 20 chr15 22113439 22113787 -79266734 - THE1B LTR MaLR -6 358 1 6196 106 9 5 chr15 22113787 22114677 -79265844 + L1PA10 LINE L1 5590 6483 0 1450 141 0 33 chr15 22115130 22115372 -79265149 - AluJb SINE Alu -19 293 60 401 321 42 17 chr15 22115399 22115636 -79264885 - LTR16A1 LTR ERVL -2 455 213 283 287 21 0 chr15 22115857 22115951 -79264570 + MER53 DNA DNA 94 189 0 300 253 107 15 chr15 22116906 22117033 -79263488 - L1MD3 LINE L1 0 7808 7685 304 231 0 0 chr15 22117035 22117087 -79263434 - L1MDa LINE L1 -5887 653 602 1354 229 42 55 chr15 22117168 22117570 -79262951 - L1MDa LINE L1 -6128 412 16 644 246 141 113 chr15 22118217 22118997 -79261524 + L1MC4 LINE L1 7155 7956 -86 1049 235 75 14 chr15 22119014 22119295 -79261226 + MER58B DNA MER1_type 1 298 -43 826 264 164 37 chr15 22119300 22119909 -79260612 + L1ME3A LINE L1 5480 6169 -1 1680 189 0 19 chr15 22119912 22120229 -79260292 + AluJo SINE Alu 1 311 -1 195 245 0 19 chr15 22120317 22120370 -79260151 - MIR SINE MIR -109 153 102 397 325 61 20 chr15 22121288 22121485 -79259036 - MIR SINE MIR -23 239 35 288 57 0 0 chr15 22121554 22121589 -79258932 + U2 snRNA snRNA 2 36 -152 542 86 12 0 chr15 22121704 22121785 -79258736 + (GAAA)n Simple_repeat Simple_repeat 4 85 0 298 147 29 15 chr15 22121780 22121848 -79258673 + G-rich Low_complexity Low_complexity 4 72 0 * 834 149 23 6 chr15 22121839 22122014 -79258507 + GA-rich Low_complexity Low_complexity 1 178 0 2423 164 20 41 chr15 22123523 22123961 -79256560 - MSTB1 LTR MaLR -3 429 1 1515 272 108 20 chr15 22124693 22125405 -79255116 - HERVL40 LTR ERVL -271 5259 4461 913 271 98 46 chr15 22125403 22125791 -79254730 - HERVL40 LTR ERVL -1367 4163 3756 * 896 224 29 0 chr15 22125810 22126015 -79254506 - MER20 DNA MER1_type 0 219 9 319 324 35 35 chr15 22126295 22126440 -79254081 + MIR SINE MIR 20 164 -98 200 260 27 27 chr15 22126871 22126944 -79253577 + GA-rich Low_complexity Low_complexity 6 78 0 21 0 0 0 chr15 22127346 22127367 -79253154 + AT_rich Low_complexity Low_complexity 1 21 0 28 71 0 0 chr15 22127639 22127695 -79252826 + AT_rich Low_complexity Low_complexity 1 56 0 2127 102 0 20 chr15 22127990 22128294 -79252227 + AluSx SINE Alu 1 298 -14 25 0 0 0 chr15 22128782 22128807 -79251714 + AT_rich Low_complexity Low_complexity 1 25 0 1952 112 0 11 chr15 22128807 22129084 -79251437 - AluSx SINE Alu -2 310 37 575 162 0 10 chr15 22129119 22129218 -79251303 + MER4A LTR ERV1 1 98 -566 1722 149 3 72 chr15 22129220 22129589 -79250932 + MER4A LTR ERV1 263 664 0 1365 275 113 45 chr15 22129618 22131194 -79249327 - L1ME3A LINE L1 -223 6016 4335 219 69 0 0 chr15 22131999 22132028 -79248493 + (TC)n Simple_repeat Simple_repeat 2 30 0 275 276 13 40 chr15 22132350 22132426 -79248095 + MIR3 SINE MIR 129 202 -6 485 81 27 0 chr15 22132462 22132536 -79247985 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 1596 105 5 5 chr15 22133264 22133483 -79247038 + AluSg/x SINE Alu 90 308 -4 1410 180 10 39 chr15 22134257 22134568 -79245953 - AluJb SINE Alu -10 302 1 1004 118 0 0 chr15 22134568 22134703 -79245818 - AluSq/x SINE Alu -178 135 1 1457 274 99 16 chr15 22135418 22135925 -79244596 - MLT1H1 LTR MaLR -6 549 1 228 229 33 0 chr15 22136007 22136068 -79244453 + MLT1J LTR MaLR 105 167 -344 189 0 0 0 chr15 22137039 22137060 -79243461 + (A)n Simple_repeat Simple_repeat 1 21 0 286 277 22 51 chr15 22137081 22137218 -79243303 - L1ME3A LINE L1 -4729 1667 1535 591 278 81 19 chr15 22137221 22137430 -79243091 - MER58A DNA MER1_type 0 224 3 226 353 23 15 chr15 22137575 22137708 -79242813 - L1ME3A LINE L1 -4882 1323 1190 1026 88 0 7 chr15 22137740 22137877 -79242644 - AluY SINE Alu -175 136 1 207 240 20 0 chr15 22137906 22137956 -79242565 + MIR SINE MIR 103 153 -109 227 321 55 0 chr15 22137965 22138074 -79242447 - LTR67 LTR ERVL -2 555 441 1919 141 0 0 chr15 22139700 22139977 -79240544 + AluSx SINE Alu 28 304 -8 2430 43 4 0 chr15 22140022 22140303 -79240218 + AluY SINE Alu 1 282 -29 25 0 0 0 chr15 22140310 22140335 -79240186 + AT_rich Low_complexity Low_complexity 1 25 0 1266 111 6 0 chr15 22140374 22140545 -79239976 - AluSq SINE Alu -19 294 123 853 38 0 0 chr15 22140567 22140672 -79239849 - AluY SINE Alu 0 311 207 878 97 0 0 chr15 22140672 22140785 -79239736 - AluSp SINE Alu -200 113 1 3989 188 28 35 chr15 22141383 22142234 -79238287 + L1MB3 LINE L1 5332 6176 -7 466 219 0 48 chr15 22142235 22142340 -79238181 + AluSq SINE Alu 120 219 -94 565 108 49 49 chr15 22142742 22142844 -79237677 + AluSg/x SINE Alu 206 307 -2 1909 152 0 29 chr15 22143278 22143593 -79236928 + AluJb SINE Alu 1 306 -6 2501 63 0 16 chr15 22143593 22143909 -79236612 + AluY SINE Alu 1 311 0 2040 228 23 21 chr15 22145583 22146113 -79234408 + MER74A LTR ERVL 15 545 -13 1630 122 13 4 chr15 22146116 22146395 -79234126 + AluSx SINE Alu 44 324 0 2137 136 0 0 chr15 22147255 22147556 -79232965 - AluSg SINE Alu -9 301 1 324 294 124 90 chr15 22147927 22148079 -79232442 - L1ME3A LINE L1 -5744 461 316 776 255 39 10 chr15 22148079 22148283 -79232238 - MER63A DNA MER1_type 0 210 1 324 294 124 90 chr15 22148283 22148484 -79232037 - L1ME3A LINE L1 -5889 316 96 25 51 0 0 chr15 22148812 22148851 -79231670 + AT_rich Low_complexity Low_complexity 1 39 0 32 43 0 0 chr15 22148879 22148925 -79231596 + AT_rich Low_complexity Low_complexity 1 46 0 1945 154 0 3 chr15 22149119 22149424 -79231097 + AluSx SINE Alu 1 304 -8 2893 136 9 59 chr15 22149852 22150370 -79230151 + LTR12 LTR ERV1 4 478 -236 569 253 89 72 chr15 22151375 22151878 -79228643 + L1M4 LINE L1 2769 3280 -2866 352 217 0 0 chr15 22151904 22151973 -79228548 + AluJ/FLAM SINE Alu 1 69 -233 1449 150 63 8 chr15 22151973 22152227 -79228294 + AluJb SINE Alu 30 297 -15 1188 248 80 30 chr15 22154383 22154823 -79225698 + MLT1C LTR MaLR 6 467 0 490 301 17 23 chr15 22155049 22155222 -79225299 - L1MC/D LINE L1 -2063 5745 5574 1182 133 9 67 chr15 22155620 22155845 -79224676 - L1MB3 LINE L1 -10 6173 5962 22 0 0 0 chr15 22155906 22155928 -79224593 + AT_rich Low_complexity Low_complexity 1 22 0 1207 129 40 0 chr15 22156059 22156261 -79224260 - L1MA8 LINE L1 -7 6284 6075 891 327 87 43 chr15 22156297 22157048 -79223473 - L1MC/D LINE L1 -1339 4807 4002 306 0 0 0 chr15 22157048 22157082 -79223439 + (CA)n Simple_repeat Simple_repeat 2 35 0 891 327 87 43 chr15 22157082 22157293 -79223228 - L1MC/D LINE L1 -2144 4002 3802 799 199 20 165 chr15 22157475 22157826 -79222695 + MER51C LTR ERV1 341 640 0 21 0 0 0 chr15 22158145 22158166 -79222355 + AT_rich Low_complexity Low_complexity 1 21 0 1819 108 100 4 chr15 22158431 22158710 -79221811 - AluSc SINE Alu -3 306 1 416 310 91 44 chr15 22158894 22159300 -79221221 - HAL1b LINE L1 -691 657 233 376 306 46 27 chr15 22159821 22160040 -79220481 - HAL1 LINE L1 -1159 1348 1126 2040 135 10 0 chr15 22160158 22160454 -79220067 - AluSx SINE Alu -13 299 1 243 248 79 30 chr15 22160853 22160954 -79219567 - MIR SINE MIR -50 212 107 342 282 106 37 chr15 22161279 22161524 -79218997 + L1ME LINE L1 5493 5754 -367 6622 176 42 4 chr15 22161798 22163047 -79217474 + L1MC3 LINE L1 5326 6621 -1164 212 147 0 0 chr15 22163047 22163081 -79217440 + (GAAAA)n Simple_repeat Simple_repeat 5 38 0 1265 244 19 4 chr15 22163652 22163923 -79216598 + L1MC3 LINE L1 6594 6868 -917 3027 174 100 60 chr15 22163930 22164303 -79216218 + L1MC3 LINE L1 7019 7376 -409 1846 138 0 31 chr15 22164303 22164594 -79215927 + AluJo SINE Alu 5 286 -26 3027 174 100 60 chr15 22164594 22164950 -79215571 + L1MC3 LINE L1 7376 7777 -8 1972 115 79 55 chr15 22166805 22167171 -79213350 + THE1C LTR MaLR 1 375 0 1925 251 31 36 chr15 22167237 22167815 -79212706 - MER90 LTR ERV1 0 575 1 2594 141 33 0 chr15 22167923 22168313 -79212208 + MER57A LTR ERV1 1 403 0 8291 129 17 10 chr15 22168313 22169568 -79210953 + MER57A-int LTR ERV1 1 1264 -6273 * 8502 156 58 31 chr15 22169553 22171372 -79209149 + MER41-int LTR ERV1 506 3265 -2681 2273 103 3 10 chr15 22171375 22171687 -79208834 + AluSx SINE Alu 1 310 -2 25 0 0 0 chr15 22171687 22171712 -79208809 + AT_rich Low_complexity Low_complexity 1 25 0 2127 102 0 20 chr15 22172199 22172503 -79208018 - AluSx SINE Alu -14 298 1 28 71 0 0 chr15 22172798 22172854 -79207667 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr15 22173126 22173147 -79207374 + AT_rich Low_complexity Low_complexity 1 21 0 183 330 48 10 chr15 22173455 22173558 -79206963 + L2 LINE L2 1846 1952 -1362 319 324 35 35 chr15 22174053 22174198 -79206323 - MIR SINE MIR -98 164 20 896 224 29 0 chr15 22174478 22174683 -79205838 + MER20 DNA MER1_type 9 219 0 821 263 62 53 chr15 22174702 22175040 -79205481 + HERVL40 LTR ERVL 3756 4096 -1434 1526 269 113 22 chr15 22175127 22175799 -79204722 + HERVL40 LTR ERVL 4502 5259 -271 2423 164 20 41 chr15 22176531 22176969 -79203552 + MSTB1 LTR MaLR 1 429 -3 762 156 24 6 chr15 22178475 22178642 -79201879 + CT-rich Low_complexity Low_complexity 1 170 0 298 147 29 15 chr15 22178633 22178701 -79201820 + C-rich Low_complexity Low_complexity 4 72 0 * 509 99 12 0 chr15 22178696 22178777 -79201744 + (TTTC)n Simple_repeat Simple_repeat 4 85 0 307 250 147 49 chr15 22179242 22179426 -79201095 + LTR33A LTR ERVL 310 511 -12 262 226 151 38 chr15 22179494 22179600 -79200921 - L2 LINE L2 -179 3093 2976 960 301 75 31 chr15 22179622 22180325 -79200196 - ERVL LTR ERVL -2662 2334 1713 816 204 0 13 chr15 22180343 22180495 -79200026 + FRAM SINE Alu 3 152 -24 422 288 79 70 chr15 22180610 22181055 -79199466 - ERVL LTR ERVL -4193 1571 1123 528 288 141 0 chr15 22181322 22181485 -79199036 + MER5A DNA MER1_type 4 189 0 585 295 27 13 chr15 22181522 22181769 -79198752 - ERVL LTR ERVL -4969 698 435 24 0 0 0 chr15 22181986 22182010 -79198511 + AT_rich Low_complexity Low_complexity 1 24 0 2166 112 0 0 chr15 22182010 22182295 -79198226 + AluSx SINE Alu 1 285 -27 207 0 0 0 chr15 22182295 22182318 -79198203 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 2155 122 0 10 chr15 22182505 22182809 -79197712 - AluSx SINE Alu -11 301 1 198 0 0 0 chr15 22183405 22183427 -79197094 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 454 246 64 60 chr15 22183445 22183808 -79196713 - MLT1H LTR MaLR -98 457 32 218 344 22 0 chr15 22183873 22183963 -79196558 + L2 LINE L2 3181 3272 0 2246 91 0 7 chr15 22184527 22184854 -79195667 - AluY SINE Alu 0 311 1 285 252 84 17 chr15 22186271 22186390 -79194131 + L1ME4a LINE L1 5991 6117 -4 1080 160 13 179 chr15 22186628 22187009 -79193512 + L1MC4 LINE L1 6458 6775 -1267 554 237 66 33 chr15 22187026 22187178 -79193343 + MER77 LTR ERV1 41 197 -408 500 226 133 61 chr15 22187230 22187411 -79193110 + MER77 LTR ERV1 177 370 -235 263 283 119 87 chr15 22188196 22188415 -79192106 - L2 LINE L2 0 3272 3047 221 0 35 0 chr15 22188763 22188792 -79191729 + (TA)n Simple_repeat Simple_repeat 2 31 0 425 350 102 39 chr15 22190260 22190797 -79189724 - L2 LINE L2 -1 3271 2703 4078 252 54 16 chr15 22191098 22191971 -79188550 + L1M4 LINE L1 2960 3905 -2241 985 63 87 0 chr15 22191971 22192098 -79188423 + MER85 DNA T2_type 1 138 -1 4078 252 54 16 chr15 22192098 22192583 -79187938 + L1M4 LINE L1 3905 4370 -1776 732 221 21 32 chr15 22193084 22193274 -79187247 + L1 LINE L1 4120 4307 -1839 6127 86 20 1 chr15 22193287 22194159 -79186362 + L1M3e LINE L1 2117 2986 -4579 1853 187 3 0 chr15 22194965 22195270 -79185251 - AluJb SINE Alu -6 306 1 1133 158 0 0 chr15 22195617 22195794 -79184727 + FRAM SINE Alu 1 169 -7 198 0 0 0 chr15 22198996 22199018 -79181503 + (T)n Simple_repeat Simple_repeat 1 22 0 8384 138 26 35 chr15 22199421 22199569 -79180952 - Tigger1 DNA MER2_type 0 2418 2270 2261 129 49 22 chr15 22199569 22199934 -79180587 - THE1C LTR MaLR 0 375 1 8384 138 26 35 chr15 22199934 22200154 -79180367 - Tigger1 DNA MER2_type -148 2270 2049 2043 89 4 4 chr15 22200154 22200425 -79180096 + AluSc SINE Alu 1 271 -38 222 37 0 0 chr15 22200429 22200456 -79180065 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8384 138 26 35 chr15 22200456 22201499 -79179022 - Tigger1 DNA MER2_type -372 2046 1014 655 226 0 23 chr15 22201502 22201635 -79178886 + FLAM_C SINE Alu 3 132 -1 1595 131 31 8 chr15 22201648 22201907 -79178614 - Tigger1 DNA MER2_type -1918 500 236 7851 127 146 31 chr15 22201910 22203430 -79177091 - pTR5 LTR ERV1 0 2438 744 1358 129 4 98 chr15 22203430 22203694 -79176827 - Tigger1 DNA MER2_type -2178 240 2 21 0 0 0 chr15 22204385 22204406 -79176115 + AT_rich Low_complexity Low_complexity 1 21 0 222 37 0 0 chr15 22205639 22205666 -79174855 + (TC)n Simple_repeat Simple_repeat 2 28 0 203 200 22 0 chr15 22205865 22205910 -79174611 + L2 LINE L2 3227 3272 0 2229 119 0 3 chr15 22206230 22206541 -79173980 + AluSx SINE Alu 3 312 0 375 199 28 21 chr15 22206735 22206876 -79173645 + CT-rich Low_complexity Low_complexity 3 144 0 2057 227 84 23 chr15 22207014 22207612 -79172909 - MER92B LTR ERV1 -1 635 2 476 297 31 0 chr15 22208088 22208216 -79172305 + MIR SINE MIR 88 219 -43 343 290 36 22 chr15 22208355 22208493 -79172028 + L2 LINE L2 3126 3265 -7 199 157 39 0 chr15 22208535 22208586 -79171935 + GA-rich Low_complexity Low_complexity 2 54 0 189 147 0 0 chr15 22208626 22208660 -79171861 + (GGAGAA)n Simple_repeat Simple_repeat 3 36 0 2103 119 0 55 chr15 22210754 22211082 -79169439 + AluSg SINE Alu 1 310 0 210 37 0 0 chr15 22212252 22212279 -79168242 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 1961 127 48 3 chr15 22212504 22212795 -79167726 - AluSx SINE Alu -8 304 1 2388 75 20 3 chr15 22213816 22214122 -79166399 - AluY SINE Alu 0 311 1 1493 160 30 15 chr15 22214122 22214385 -79166136 - AluJo SINE Alu -17 295 29 3814 137 79 12 chr15 22214583 22215225 -79165296 + LTR12 LTR ERV1 1 685 -3 1575 148 33 30 chr15 22215554 22215825 -79164696 + AluJb SINE Alu 16 287 -25 2376 156 47 5 chr15 22215984 22216407 -79164114 + L1PA14 LINE L1 5721 6161 0 34 0 0 0 chr15 22216421 22216455 -79164066 + AT_rich Low_complexity Low_complexity 1 34 0 1105 158 98 24 chr15 22216488 22216785 -79163736 + MER33 DNA MER1_type 6 324 0 629 275 48 37 chr15 22217018 22217274 -79163247 - MLT2F LTR ERVL -9 654 396 929 236 11 0 chr15 22217274 22217456 -79163065 - MER63A DNA MER1_type 0 210 27 1534 261 20 23 chr15 22217482 22217881 -79162640 - MLT2F LTR ERVL -265 398 1 348 296 83 0 chr15 22217896 22218028 -79162493 - MIR SINE MIR -109 153 11 7455 132 14 6 chr15 22218043 22220278 -79160243 + L1MA2 LINE L1 4048 6303 -1 33 0 0 0 chr15 22220279 22220312 -79160209 + AT_rich Low_complexity Low_complexity 1 33 0 1842 140 60 3 chr15 22220531 22220816 -79159705 + AluSx SINE Alu 1 301 -11 1467 182 64 10 chr15 22221690 22221986 -79158535 + AluJo SINE Alu 1 312 0 1106 239 95 21 chr15 22222839 22223103 -79157418 - L1M4 LINE L1 -920 5226 4918 186 43 0 0 chr15 22223103 22223126 -79157395 + (CA)n Simple_repeat Simple_repeat 2 24 0 1106 239 95 21 chr15 22223126 22223284 -79157237 - L1M4 LINE L1 -1228 4918 4773 260 357 18 52 chr15 22223292 22223620 -79156901 - L1MCc LINE L1 -6088 335 19 2407 149 45 12 chr15 22223850 22224306 -79156215 + Tigger2 DNA MER2_type 1 2717 -1 1798 173 36 15 chr15 22224599 22224935 -79155586 - MER2 DNA MER2_type -1 343 1 1689 127 0 4 chr15 22225359 22225596 -79154925 + AluSq SINE Alu 1 236 -77 23 0 0 0 chr15 22225607 22225630 -79154891 + AT_rich Low_complexity Low_complexity 1 23 0 1843 156 0 21 chr15 22225822 22226110 -79154411 + AluJo SINE Alu 1 282 -30 1434 205 79 3 chr15 22226229 22226532 -79153989 + MLT1E2 LTR MaLR 135 460 -166 516 167 21 10 chr15 22226532 22226628 -79153893 + MER4A LTR ERV1 2 98 -566 * 1718 168 11 19 chr15 22226624 22226976 -79153545 + MER4A LTR ERV1 257 664 0 641 239 38 0 chr15 22226977 22227136 -79153385 + MLT1E2 LTR MaLR 459 623 -1 780 254 152 72 chr15 22228032 22228482 -79152039 + MER34C LTR ERV1 4 505 -80 2040 128 3 13 chr15 22228482 22228780 -79151741 - AluSx SINE Alu -15 297 3 780 254 152 72 chr15 22228780 22228868 -79151653 + MER34C LTR ERV1 505 585 0 1168 88 6 50 chr15 22228893 22229074 -79151447 + MER4A LTR ERV1 1 173 -491 1691 94 5 0 chr15 22229083 22229306 -79151215 + MER4E LTR ERV1 3 226 -553 1168 88 6 50 chr15 22229337 22229518 -79151003 + MER4A LTR ERV1 1 173 -491 5087 122 14 38 chr15 22229527 22229988 -79150533 + MER4E LTR ERV1 3 473 -306 1094 23 8 0 chr15 22229988 22230121 -79150400 + (TTTC)n Simple_repeat Simple_repeat 3 136 0 1927 101 26 4 chr15 22230130 22230398 -79150123 - AluSx SINE Alu -38 274 1 5087 122 14 38 chr15 22230398 22230722 -79149799 + MER4E LTR ERV1 481 779 0 2005 138 72 52 chr15 22230726 22231131 -79149390 + MER4A LTR ERV1 252 664 0 2369 92 3 19 chr15 22232052 22232369 -79148152 + AluSq SINE Alu 2 313 0 572 230 7 7 chr15 22232386 22232521 -79148000 + FAM SINE Alu 1 135 -50 338 256 54 14 chr15 22232623 22232807 -79147714 - MER34 LTR ERV1 -3 746 447 242 196 37 93 chr15 22232835 22232871 -79147650 - LTR48 LTR ERV1 -301 486 450 3207 188 21 65 chr15 22232871 22233594 -79146927 + LTR8 LTR ERV1 1 691 0 242 196 37 93 chr15 22233594 22233664 -79146857 - LTR48 LTR ERV1 -337 450 386 1247 103 11 0 chr15 22233664 22233838 -79146683 + MER41B LTR ERV1 1 176 -459 2180 94 0 10 chr15 22233839 22234167 -79146354 + AluY SINE Alu 1 311 0 192 344 22 0 chr15 22234729 22234819 -79145702 - L2 LINE L2 0 3272 3181 451 238 72 68 chr15 22234884 22235247 -79145274 + MLT1H LTR MaLR 32 457 -98 198 0 0 0 chr15 22235265 22235287 -79145234 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2174 122 0 10 chr15 22235883 22236187 -79144334 + AluSx SINE Alu 1 301 -11 207 0 0 0 chr15 22236374 22236397 -79144124 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 2186 112 0 0 chr15 22236397 22236682 -79143839 - AluSx SINE Alu -27 285 1 24 0 0 0 chr15 22236682 22236706 -79143815 + AT_rich Low_complexity Low_complexity 1 24 0 580 295 27 13 chr15 22236923 22237170 -79143351 + ERVL LTR ERVL 435 698 -4969 478 294 141 0 chr15 22237207 22237370 -79143151 - MER5A DNA MER1_type 0 189 4 437 287 79 68 chr15 22237638 22238081 -79142440 + ERVL LTR ERVL 1124 1571 -4193 821 204 0 13 chr15 22238196 22238348 -79142173 - FRAM SINE Alu -24 152 3 952 306 81 34 chr15 22238366 22239069 -79141452 + ERVL LTR ERVL 1713 2452 -2662 255 214 129 0 chr15 22239091 22239161 -79141360 + L2 LINE L2 2976 3054 -218 301 261 147 49 chr15 22239265 22239449 -79141072 - LTR33A LTR ERVL -12 511 310 645 0 0 0 chr15 22241488 22241560 -79138961 - tRNA-Glu-GAA tRNA tRNA -3 72 1 2294 94 24 3 chr15 22242177 22242507 -79138014 + L1PA12 LINE L1 5824 6160 -8 569 260 123 10 chr15 22243970 22244174 -79136347 + MLT1J2 LTR MaLR 195 421 -29 920 94 8 0 chr15 22244937 22245065 -79135456 + AluSc SINE Alu 179 307 -2 239 204 37 0 chr15 22245449 22245503 -79135018 - MIR SINE MIR -90 118 63 951 120 15 29 chr15 22245612 22245778 -79134743 - MER41-int LTR ERV1 -3095 2851 1214 318 175 0 0 chr15 22245895 22245952 -79134569 - FAM SINE Alu -3 176 120 327 215 13 0 chr15 22246206 22246285 -79134236 + MER116 DNA Mariner 1 80 0 697 209 44 6 chr15 22246472 22246630 -79133891 - MER69 DNA AcHobo -2343 183 20 2545 127 26 0 chr15 22247225 22247612 -79132909 - MER57A LTR ERV1 -6 397 1 1384 88 156 0 chr15 22247619 22247824 -79132697 - MER57A-int LTR ERV1 -22 7515 7279 815 76 23 38 chr15 22247824 22247955 -79132566 - LTR54B LTR ERV1 -367 131 3 17174 98 30 5 chr15 22247955 22250359 -79130162 - MER57A-int LTR ERV1 -391 7146 4683 4354 116 3 18 chr15 22250359 22250986 -79129535 - LTR8 LTR ERV1 0 691 74 1613 203 65 46 chr15 22300986 22301241 -79079280 - L1 LINE L1 -1296 4850 4580 1894 140 3 56 chr15 22301241 22301562 -79078959 + AluSx SINE Alu 9 312 0 1613 203 65 46 chr15 22301562 22301785 -79078736 - L1 LINE L1 -1566 4580 4363 2125 113 44 19 chr15 22301787 22302151 -79078370 + THE1C LTR MaLR 3 375 0 2491 168 15 50 chr15 22302153 22302222 -79078299 - L1 LINE L1 -1780 4366 4296 1902 189 0 0 chr15 22302222 22302518 -79078003 - AluJb SINE Alu -16 296 1 2491 168 15 50 chr15 22302518 22302587 -79077934 - L1 LINE L1 -1850 4296 4226 276 30 0 0 chr15 22302587 22302620 -79077901 + (TG)n Simple_repeat Simple_repeat 2 34 0 2491 168 15 50 chr15 22302620 22303077 -79077444 - L1 LINE L1 -1920 4226 3791 255 114 0 0 chr15 22303256 22303300 -79077221 + (GA)n Simple_repeat Simple_repeat 1 44 0 252 0 0 0 chr15 22303328 22303356 -79077165 + (GA)n Simple_repeat Simple_repeat 1 28 0 206 32 32 0 chr15 22303464 22303495 -79077026 + (GA)n Simple_repeat Simple_repeat 1 32 0 446 261 125 23 chr15 22303635 22303811 -79076710 - MIR SINE MIR -48 214 21 1538 215 233 30 chr15 22304630 22304694 -79075827 + L1ME1 LINE L1 4471 4521 -1625 2173 112 27 0 chr15 22304694 22304988 -79075533 - AluSp SINE Alu -11 302 1 1538 215 233 30 chr15 22304988 22305336 -79075185 + L1ME1 LINE L1 4521 4797 -1349 2727 75 11 0 chr15 22305336 22305696 -79074825 + THE1B LTR MaLR 1 364 0 1538 215 233 30 chr15 22305696 22305976 -79074545 + L1ME1 LINE L1 4797 5305 -841 718 75 11 0 chr15 22305978 22306072 -79074449 - AluY SINE Alu -12 299 205 2275 257 97 10 chr15 22306073 22306856 -79073665 + L1ME1 LINE L1 5301 6151 -15 409 245 39 0 chr15 22307143 22307245 -79073276 + MER5A DNA MER1_type 4 109 -80 1581 212 87 60 chr15 22309618 22310066 -79070455 + LTR40b LTR ERVL 3 462 0 273 281 21 0 chr15 22310246 22310342 -79070179 - MER5A DNA MER1_type -83 106 9 2095 101 30 0 chr15 22310422 22310718 -79069803 + AluSp SINE Alu 1 305 -8 1815 180 10 57 chr15 22311264 22311669 -79068852 + MLT1B LTR MaLR 1 386 -4 472 300 110 21 chr15 22311684 22311921 -79068600 - L3b LINE CR1 -123 1460 1203 207 0 0 0 chr15 22312411 22312434 -79068087 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 215 295 103 0 chr15 22312635 22312713 -79067808 + MER5B DNA MER1_type 9 94 -84 652 149 9 9 chr15 22313203 22313310 -79067211 + MLT1B LTR MaLR 222 328 -62 1712 190 116 52 chr15 22313333 22313585 -79066936 - MER82 DNA MER2_type -221 432 198 2000 122 0 0 chr15 22313585 22313871 -79066650 + AluSx SINE Alu 1 286 -26 372 22 0 0 chr15 22313871 22313916 -79066605 + (CA)n Simple_repeat Simple_repeat 2 46 0 1712 190 116 52 chr15 22313916 22314068 -79066453 - MER82 DNA MER2_type -454 199 1 215 359 13 0 chr15 22314305 22314383 -79066138 + MIR3 SINE MIR 129 207 -1 2899 147 36 32 chr15 22314990 22315380 -79065141 + LTR26B LTR ERV1 1 395 -136 1278 164 285 14 chr15 22315380 22315734 -79064787 - LTR7 LTR ERV1 0 450 1 2899 147 36 32 chr15 22315734 22315872 -79064649 + LTR26B LTR ERV1 395 531 0 255 237 0 34 chr15 22316362 22316421 -79064100 + MIR SINE MIR 170 226 -36 769 161 8 8 chr15 22316513 22316637 -79063884 + FLAM_C SINE Alu 2 125 -18 222 136 0 0 chr15 22317745 22317789 -79062732 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 4562 167 47 8 chr15 22318479 22319323 -79061198 + MER4D LTR ERV1 1 877 -26 302 237 65 79 chr15 22319880 22320019 -79060502 + L1MC4a LINE L1 5868 6004 -1804 2163 163 70 34 chr15 22320088 22320531 -79059990 + LTR2B LTR ERV1 32 490 0 258 308 71 69 chr15 22320962 22321135 -79059386 - MIR SINE MIR -64 198 21 21 0 0 0 chr15 22322424 22322445 -79058076 + AT_rich Low_complexity Low_complexity 1 21 0 527 247 62 75 chr15 22322450 22322888 -79057633 - L1MC5 LINE L1 -53 7908 7477 383 322 70 26 chr15 22323925 22324155 -79056366 - L3 LINE CR1 -869 708 469 1241 211 31 20 chr15 22324157 22324540 -79055981 - L1M3b LINE L1 -4603 1678 1284 1938 119 0 7 chr15 22324547 22324842 -79055679 + AluSg1 SINE Alu 14 306 -3 387 0 0 0 chr15 22324848 22324891 -79055630 + (CA)n Simple_repeat Simple_repeat 2 44 0 926 249 133 72 chr15 22324971 22325336 -79055185 + LTR1B LTR ERV1 56 464 -362 2123 106 3 3 chr15 22325336 22325638 -79054883 - AluSx SINE Alu -10 302 1 926 249 133 72 chr15 22325638 22325799 -79054722 + LTR1B LTR ERV1 464 614 -212 277 242 172 20 chr15 22325879 22325978 -79054543 + LTR28 LTR ERV1 900 1013 -7 1598 170 7 0 chr15 22325985 22326261 -79054260 + AluJb SINE Alu 31 308 -4 198 103 0 0 chr15 22327318 22327347 -79053174 + (CAGG)n Simple_repeat Simple_repeat 3 31 0 283 108 60 5 chr15 22327390 22327448 -79053073 - MLT2B1 LTR ERVL 0 554 462 358 147 35 35 chr15 22327450 22327566 -79052955 + (TAGA)n Simple_repeat Simple_repeat 3 118 0 1369 253 108 7 chr15 22327610 22328065 -79052456 - MLT2B1 LTR ERVL -19 501 1 526 208 23 62 chr15 22328423 22328553 -79051968 - FLAM_C SINE Alu -16 127 3 3395 169 120 2 chr15 22328798 22329430 -79051091 - LTR12 LTR ERV1 -7 707 1 1465 158 12 15 chr15 22330717 22330976 -79049545 + MER2 DNA MER2_type 86 343 -2 21 0 0 0 chr15 22331839 22331860 -79048661 + AT_rich Low_complexity Low_complexity 1 21 0 1221 166 104 68 chr15 22332526 22332804 -79047717 + AluJo SINE Alu 1 288 -24 1679 162 0 17 chr15 22332815 22333141 -79047380 + AluJb SINE Alu 1 321 0 351 0 0 0 chr15 22333174 22333213 -79047308 + (CA)n Simple_repeat Simple_repeat 2 40 0 350 344 56 28 chr15 22333355 22333535 -79046986 - MIR3 SINE MIR -12 196 12 425 309 67 26 chr15 22333676 22333870 -79046651 + MIR3 SINE MIR 6 207 -1 513 316 124 9 chr15 22334186 22334509 -79046012 + L1MEc LINE L1 70 429 -5967 1962 89 33 0 chr15 22334572 22334692 -79045829 + AluSc SINE Alu 1 116 -203 392 0 21 0 chr15 22334692 22334740 -79045781 + (CA)n Simple_repeat Simple_repeat 2 50 0 1962 89 33 0 chr15 22334740 22334929 -79045592 + AluSc SINE Alu 116 319 0 815 259 45 0 chr15 22335066 22335267 -79045254 + MER20 DNA MER1_type 1 210 -9 961 158 7 0 chr15 22335330 22335482 -79045039 + FRAM SINE Alu 1 153 -23 376 172 62 14 chr15 22335482 22335627 -79044894 + (TA)n Simple_repeat Simple_repeat 1 152 0 1994 68 0 0 chr15 22335685 22335936 -79044585 + AluY SINE Alu 45 295 -16 521 186 20 0 chr15 22337280 22337382 -79043139 - MER53 DNA DNA -85 104 1 180 311 40 14 chr15 22337830 22337904 -79042617 - MIR SINE MIR -70 192 117 1728 146 3 20 chr15 22338349 22338644 -79041877 + AluJb SINE Alu 1 290 -22 3119 185 42 5 chr15 22338970 22339614 -79040907 - L1MB7 LINE L1 0 6184 5517 1998 148 0 10 chr15 22339644 22339955 -79040566 + AluSq SINE Alu 1 308 -5 2198 142 60 53 chr15 22340075 22340120 -79040401 - MSTA LTR MaLR 0 428 385 2126 103 0 13 chr15 22340120 22340421 -79040100 + AluSc SINE Alu 1 297 -12 2198 142 60 53 chr15 22340421 22340791 -79039730 - MSTA LTR MaLR -43 385 10 479 281 96 0 chr15 22340851 22341029 -79039492 + MLT1I LTR MaLR 3 197 -212 1170 127 6 0 chr15 22341029 22341202 -79039319 - AluSg/x SINE Alu -15 295 122 522 309 59 0 chr15 22341202 22341406 -79039115 + MLT1I LTR MaLR 194 409 0 417 309 112 27 chr15 22341786 22342009 -79038512 - L2 LINE L2 -155 3117 2876 375 347 60 69 chr15 22342159 22342608 -79037913 - L2 LINE L2 -592 2722 2278 3598 164 20 41 chr15 22343257 22343962 -79036559 + LTR8 LTR ERV1 2 691 0 317 155 35 0 chr15 22344133 22344191 -79036330 - HERV16 LTR ERVL -3086 1910 1851 222 118 0 0 chr15 22344293 22344327 -79036194 + (TAGG)n Simple_repeat Simple_repeat 2 35 0 181 185 56 0 chr15 22344528 22344582 -79035939 + (TATG)n Simple_repeat Simple_repeat 4 60 0 363 115 49 41 chr15 22344923 22345173 -79035348 + (TG)n Simple_repeat Simple_repeat 1 252 0 399 140 47 23 chr15 22345204 22345375 -79035146 + (TG)n Simple_repeat Simple_repeat 1 175 0 270 178 70 4 chr15 22345401 22345653 -79034868 + (TG)n Simple_repeat Simple_repeat 1 268 0 753 206 22 11 chr15 22345963 22346147 -79034374 - MER53 DNA DNA 0 189 4 21 0 0 0 chr15 22346392 22346413 -79034108 + AT_rich Low_complexity Low_complexity 1 21 0 330 216 134 8 chr15 22346958 22347092 -79033429 + L1ME4a LINE L1 5968 6118 -3 544 344 35 53 chr15 22347570 22347945 -79032576 + L1M3d LINE L1 241 608 -5523 1499 234 25 50 chr15 22348108 22348325 -79032196 + L1M3d LINE L1 918 1139 -5002 1894 98 69 0 chr15 22348325 22348599 -79031922 + AluY SINE Alu 1 293 -18 1499 234 25 50 chr15 22348599 22348785 -79031736 + L1M3d LINE L1 1139 1310 -4831 1884 93 23 0 chr15 22348785 22349043 -79031478 + AluSc SINE Alu 32 295 -14 1499 234 25 50 chr15 22349043 22349122 -79031399 + L1M3d LINE L1 1310 1389 -4752 * 4918 142 22 2 chr15 22349097 22350248 -79030273 + L1MA3 LINE L1 4871 6045 -324 824 163 7 20 chr15 22350248 22350401 -79030120 + AluJo SINE Alu 1 151 -161 3073 174 14 0 chr15 22350437 22351154 -79029367 + L1MB2 LINE L1 5051 5780 -391 1371 174 11 43 chr15 22351154 22351436 -79029085 + AluJo SINE Alu 1 273 -39 225 0 0 0 chr15 22351441 22351466 -79029055 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1825 170 17 47 chr15 22351466 22351872 -79028649 + L1MB2 LINE L1 5778 6171 0 1501 231 85 38 chr15 22352401 22352847 -79027674 - MLT1D LTR MaLR 0 505 39 1201 108 0 0 chr15 22352854 22353021 -79027500 - L1PA16 LINE L1 -229 5937 5771 1771 176 143 38 chr15 22353021 22353442 -79027079 - MLT2B1 LTR ERVL -55 465 1 1064 191 3 95 chr15 22353443 22353536 -79026985 + AluJb SINE Alu 24 124 -188 1482 139 51 70 chr15 22353536 22353852 -79026669 - AluSp SINE Alu -3 310 1 1064 191 3 95 chr15 22353852 22354073 -79026448 + AluJb SINE Alu 124 309 -3 230 200 109 0 chr15 22354326 22354381 -79026140 - MIR SINE MIR -93 169 109 23 0 0 0 chr15 22355662 22355685 -79024836 + AT_rich Low_complexity Low_complexity 1 23 0 537 264 29 23 chr15 22356522 22356696 -79023825 - MER45A DNA AcHobo 0 178 4 713 34 0 0 chr15 22357212 22357300 -79023221 + AluY SINE Alu 216 303 -8 767 49 0 10 chr15 22357314 22357416 -79023105 + AluY SINE Alu 200 300 -11 432 244 76 67 chr15 22357775 22358013 -79022508 + pTR5 LTR ERV1 761 1000 -1438 3206 166 46 58 chr15 22358223 22358918 -79021603 + LTR12 LTR ERV1 1 687 -1 489 226 36 68 chr15 22360014 22360235 -79020286 - LTR37B LTR ERV1 -13 455 242 810 183 131 102 chr15 22360451 22360795 -79019726 + MLT1E2 LTR MaLR 63 416 -210 418 237 67 87 chr15 22360972 22361114 -79019407 + MER112 DNA MER1_type 3 139 -121 1792 183 20 30 chr15 22361114 22361508 -79019013 + MLT1B LTR MaLR 1 390 0 418 237 67 87 chr15 22361508 22361618 -79018903 + MER112 DNA MER1_type 139 250 -10 1335 168 76 42 chr15 22362071 22362333 -79018188 + AluJb SINE Alu 1 271 -41 312 232 40 20 chr15 22362950 22363049 -79017472 - MER5A DNA MER1_type -80 109 9 27 0 0 0 chr15 22363712 22363739 -79016782 + AT_rich Low_complexity Low_complexity 1 27 0 2606 58 0 0 chr15 22363752 22364063 -79016458 - AluY SINE Alu 0 311 1 1507 223 103 5 chr15 22364163 22364562 -79015959 + L1MB2 LINE L1 5692 6129 -42 401 186 52 52 chr15 22364562 22364659 -79015862 + AluJb SINE Alu 32 128 -174 917 197 17 6 chr15 22364768 22364946 -79015575 + AluJb SINE Alu 111 290 -22 306 105 0 0 chr15 22364948 22365005 -79015516 + L1MB3 LINE L1 6127 6183 0 1462 175 18 103 chr15 22365330 22365729 -79014792 - MLT1A1 LTR MaLR 0 365 1 611 67 11 0 chr15 22365938 22366027 -79014494 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 1901 144 0 7 chr15 22366782 22367189 -79013332 - AluSx SINE Alu 0 405 1 1347 65 0 38 chr15 22367569 22367753 -79012768 - AluY SINE Alu -6 305 129 2046 124 47 0 chr15 22367966 22368264 -79012257 + AluSx SINE Alu 1 312 0 216 208 21 0 chr15 22368709 22368757 -79011764 + CT-rich Low_complexity Low_complexity 1 49 0 318 189 27 14 chr15 22370477 22370551 -79009970 - MIR SINE MIR -3 259 185 759 159 164 80 chr15 22370570 22370771 -79009750 - MER20 DNA MER1_type -1 218 1 2721 263 25 22 chr15 22370951 22372207 -79008314 + L1M3c LINE L1 2 1625 -4516 3535 245 36 28 chr15 22372216 22373413 -79007108 + L1MA4 LINE L1 2420 3629 -3936 2251 113 3 0 chr15 22373413 22373715 -79006806 + AluSg SINE Alu 1 303 -7 3535 245 36 28 chr15 22373715 22373759 -79006762 + L1MA4 LINE L1 3629 3671 -3894 372 145 53 0 chr15 22373754 22373830 -79006691 + L1MA4 LINE L1 4379 4458 -3107 * 527 173 39 13 chr15 22374326 22374482 -79006039 + L1MA4 LINE L1 4447 4606 -2959 847 221 94 53 chr15 22374507 22374900 -79005621 - LTR56 LTR ERV1 -10 435 27 3611 185 51 31 chr15 22374960 22376256 -79004265 - LTR56-int LTR ERV1 -101 6005 4505 1679 163 7 24 chr15 22376256 22376581 -79003940 - AluJb SINE Alu 0 312 1 3611 185 51 31 chr15 22376581 22376678 -79003843 - LTR56-int LTR ERV1 -1601 4505 4411 529 170 88 0 chr15 22376688 22376796 -79003725 - LTR49-int LTR ERV1 -5058 1205 1 808 201 91 0 chr15 22376964 22377118 -79003403 - MER21B LTR ERV1 -367 496 329 8638 150 20 31 chr15 22377130 22378146 -79002375 + L1MA4 LINE L1 4620 5646 -2073 9168 167 26 30 chr15 22378146 22378382 -79002139 + L1PA13 LINE L1 3703 3938 -2225 2304 93 0 3 chr15 22378382 22378673 -79001848 + AluY SINE Alu 3 292 -19 9168 167 26 30 chr15 22378673 22380785 -78999736 + L1PA13 LINE L1 3938 6051 -112 3330 114 8 29 chr15 22380785 22381303 -78999218 + MER9 LTR ERVK 1 507 -4 9168 167 26 30 chr15 22381303 22381416 -78999105 + L1PA13 LINE L1 6051 6163 0 8638 150 20 31 chr15 22381416 22381880 -78998641 + L1MA4 LINE L1 5646 6114 -1605 1675 171 7 10 chr15 22381880 22382172 -78998349 - AluJb SINE Alu -21 291 1 8638 150 20 31 chr15 22382172 22382697 -78997824 + L1MA4 LINE L1 6114 6643 -1076 1846 175 3 20 chr15 22382697 22383000 -78997521 + AluJb SINE Alu 5 302 -10 8638 150 20 31 chr15 22383000 22383889 -78996632 + L1MA4 LINE L1 6643 7540 -179 1716 157 3 55 chr15 22383889 22384201 -78996320 + AluJo SINE Alu 3 298 -14 8638 150 20 31 chr15 22384201 22384308 -78996213 + L1MA4 LINE L1 7540 7522 -197 2234 100 0 3 chr15 22384308 22384599 -78995922 - AluSc SINE Alu -19 290 1 8638 150 20 31 chr15 22384599 22384796 -78995725 + L1MA4 LINE L1 7521 7719 0 922 211 14 21 chr15 22384775 22385059 -78995462 + L1 LINE L1 4308 4589 -2976 * 2161 111 3 3 chr15 22386138 22386427 -78994094 + AluSq SINE Alu 5 293 -20 2092 76 0 0 chr15 22387297 22387546 -78992975 + AluY SINE Alu 1 249 -62 2786 192 92 37 chr15 22387756 22388455 -78992066 - Tigger6a DNA MER2_type -2 1081 345 258 349 0 0 chr15 22388455 22388561 -78991960 - L1MEd LINE L1 -1257 4872 4767 223 280 70 30 chr15 22388594 22388694 -78991827 + MIR SINE MIR 36 139 -69 2065 100 10 17 chr15 22388777 22389164 -78991357 + AluSp SINE Alu 3 387 0 1676 172 7 10 chr15 22390273 22390563 -78989958 + AluJo SINE Alu 5 293 -19 2200 95 3 10 chr15 22390621 22390925 -78989596 + AluSq SINE Alu 1 302 -11 677 320 104 19 chr15 22391116 22391654 -78988867 - L1ME3A LINE L1 -213 5957 5374 2357 108 0 0 chr15 22391686 22391992 -78988529 - AluSx SINE Alu -6 306 1 314 44 0 22 chr15 22392241 22392286 -78988235 + (TG)n Simple_repeat Simple_repeat 2 45 0 1552 199 7 3 chr15 22392670 22392957 -78987564 + AluJo SINE Alu 12 299 -13 618 271 88 35 chr15 22392959 22393299 -78987222 - L1MEd LINE L1 -1508 4621 4264 281 298 92 33 chr15 22393306 22393578 -78986943 - L1MEd LINE L1 -1938 4191 3904 396 341 79 40 chr15 22393639 22393818 -78986703 - L1MEd LINE L1 -2439 3690 3520 2236 100 38 0 chr15 22393818 22394107 -78986414 - AluSx SINE Alu -8 304 5 396 341 79 40 chr15 22394107 22394332 -78986189 - L1MEd LINE L1 -2609 3520 3270 1273 201 10 55 chr15 22394592 22394901 -78985620 - AluJb SINE Alu -9 303 9 1362 266 68 30 chr15 22394955 22394972 -78985549 - L1MEd LINE L1 -2953 3176 3161 1924 175 0 9 chr15 22394972 22395287 -78985234 - AluSx SINE Alu 0 312 1 1362 266 68 30 chr15 22395287 22396076 -78984445 - L1MEd LINE L1 -2968 3161 2334 1964 121 50 0 chr15 22396076 22396356 -78984165 - AluSx SINE Alu -8 304 11 1362 266 68 30 chr15 22396356 22396388 -78984133 - L1MEd LINE L1 -3795 2334 2305 290 214 0 57 chr15 22396407 22396477 -78984044 + MIR SINE MIR 111 176 -86 354 330 70 0 chr15 22396491 22396606 -78983915 - L2 LINE L2 -1 3312 3190 282 247 54 43 chr15 22396608 22396701 -78983820 + MIR SINE MIR 169 262 0 1736 169 6 47 chr15 22396862 22397182 -78983339 - AluSx SINE Alu -5 307 1 1041 237 114 17 chr15 22397349 22397825 -78982696 - MLT1G LTR MaLR -3 587 10 288 262 0 0 chr15 22397819 22397880 -78982641 - MLT1G1 LTR MaLR -534 61 1 * 23 33 0 0 chr15 22398055 22398085 -78982436 + AT_rich Low_complexity Low_complexity 1 30 0 737 274 139 51 chr15 22398263 22398756 -78981765 - L1MEd LINE L1 -4862 1257 694 2138 128 3 0 chr15 22398756 22399053 -78981468 - AluSg SINE Alu -12 298 1 737 274 139 51 chr15 22399053 22399343 -78981178 - L1MEd LINE L1 -5425 694 431 1203 244 98 9 chr15 22399795 22400110 -78980411 - MER2 DNA MER2_type 0 345 3 1847 136 14 4 chr15 22402015 22402294 -78978227 - AluSx SINE Alu -30 282 1 3496 152 113 21 chr15 22402776 22403406 -78977115 - LTR12 LTR ERV1 0 688 1 195 269 0 0 chr15 22403511 22403563 -78976958 - L2 LINE L2 -26 3246 3195 1842 188 60 130 chr15 22403792 22404032 -78976489 + MER70B LTR ERVL 5 260 -318 3125 86 19 9 chr15 22404032 22404462 -78976059 - MER57B LTR ERV1 0 434 1 1842 188 60 130 chr15 22404462 22404838 -78975683 + MER70B LTR ERVL 260 578 0 1777 226 20 18 chr15 22405327 22405721 -78974800 - MSTD LTR MaLR -1 395 1 206 333 44 0 chr15 22406293 22406428 -78974093 - L2 LINE L2 -222 3050 2910 2026 125 0 0 chr15 22406494 22406774 -78973747 + AluSx SINE Alu 1 280 -32 217 0 61 0 chr15 22406775 22406808 -78973713 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1134 197 4 37 chr15 22407359 22407603 -78972918 - LTR51 LTR ERV1 0 671 436 292 159 0 57 chr15 22407618 22407706 -78972815 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 2217 111 69 62 chr15 22407706 22407889 -78972632 - LTR51 LTR ERV1 -232 439 259 2491 76 3 0 chr15 22407889 22408193 -78972328 + AluY SINE Alu 1 305 -6 2217 111 69 62 chr15 22408193 22408365 -78972156 - LTR51 LTR ERV1 -412 259 78 2086 83 22 70 chr15 22408365 22408678 -78971843 - AluY SINE Alu -13 298 1 2217 111 69 62 chr15 22408678 22408727 -78971794 - LTR51 LTR ERV1 -593 78 31 1656 221 113 82 chr15 22408724 22409231 -78971290 - LTR8 LTR ERV1 -232 461 1 * 2344 183 38 20 chr15 22409253 22409702 -78970819 - LTR32 LTR ERVL 0 471 15 2391 104 10 0 chr15 22410100 22410408 -78970113 - AluSx SINE Alu -1 311 1 421 229 52 100 chr15 22410804 22411020 -78969501 + MER34C LTR ERV1 47 253 -332 4006 96 5 25 chr15 22411020 22411408 -78969113 - MER41A LTR ERV1 0 554 178 2136 95 0 11 chr15 22411408 22411722 -78968799 - AluY SINE Alu 0 311 1 4006 96 5 25 chr15 22411722 22411897 -78968624 - MER41A LTR ERV1 -376 178 1 242 196 37 93 chr15 22411897 22411967 -78968554 + LTR48 LTR ERV1 386 450 -337 421 229 52 100 chr15 22411897 22411911 -78968610 + MER34C LTR ERV1 253 266 -319 3207 188 21 65 chr15 22411967 22412690 -78967831 - LTR8 LTR ERV1 0 691 1 242 196 37 93 chr15 22412690 22412726 -78967795 + LTR48 LTR ERV1 450 486 -301 338 256 54 14 chr15 22412754 22412938 -78967583 + MER34 LTR ERV1 447 539 -3 572 230 7 7 chr15 22413040 22413175 -78967346 - FAM SINE Alu -50 135 1 2399 91 0 19 chr15 22413192 22413510 -78967011 - AluSq SINE Alu 0 313 2 2269 195 5 88 chr15 22414447 22414459 -78966062 + L1MA10 LINE L1 5782 5793 -541 291 54 0 0 chr15 22414459 22414496 -78966025 + (TG)n Simple_repeat Simple_repeat 1 37 0 2269 195 5 88 chr15 22414496 22414851 -78965670 + L1MA10 LINE L1 5793 6082 -252 1743 181 3 3 chr15 22414851 22415150 -78965371 + AluJb SINE Alu 1 299 -13 2269 195 5 88 chr15 22415150 22415381 -78965140 + L1MA10 LINE L1 6082 6331 -3 271 307 187 24 chr15 22415612 22415778 -78964743 + L3 LINE CR1 1034 1226 -351 308 282 24 0 chr15 22416028 22416113 -78964408 + L3 LINE CR1 1054 1140 -437 1499 103 0 0 chr15 22416264 22416459 -78964062 + AluSc SINE Alu 1 195 -114 317 89 0 0 chr15 22416459 22416504 -78964017 + AluSc SINE Alu 254 298 -1 21 0 0 0 chr15 22416537 22416558 -78963963 + AT_rich Low_complexity Low_complexity 1 21 0 324 275 25 8 chr15 22416622 22416742 -78963779 - Tigger8 DNA MER2_type -117 549 428 492 247 95 6 chr15 22416822 22416980 -78963541 - Tigger8 DNA MER2_type -368 298 127 465 272 83 38 chr15 22417138 22417451 -78963070 - L1ME4a LINE L1 -263 5858 5532 1302 101 37 5 chr15 22417485 22417673 -78962848 - AluSg/x SINE Alu -7 305 112 822 104 0 52 chr15 22418175 22418310 -78962211 - FLAM_C SINE Alu -11 132 5 443 245 29 0 chr15 22418320 22418459 -78962062 - MER5A DNA MER1_type 0 189 47 1474 286 169 10 chr15 22418954 22419839 -78960682 + Charlie2a DNA MER1_type 529 1554 -1308 701 211 116 12 chr15 22419839 22420260 -78960261 + Charlie2a DNA MER1_type 2110 2675 -187 186 103 0 0 chr15 22420321 22420350 -78960171 + (CA)n Simple_repeat Simple_repeat 2 30 0 394 237 191 0 chr15 22420358 22420489 -78960032 + Charlie2a DNA MER1_type 1912 2067 -795 281 240 41 16 chr15 22420496 22420617 -78959904 + (TA)n Simple_repeat Simple_repeat 1 124 0 194 128 26 0 chr15 22420633 22420672 -78959849 + (TA)n Simple_repeat Simple_repeat 1 40 0 550 258 26 0 chr15 22420675 22420830 -78959691 + Charlie2a DNA MER1_type 2703 2861 -1 2470 216 93 48 chr15 22421110 22421340 -78959181 - Charlie2 DNA MER1_type -7 2855 2637 1661 192 0 7 chr15 22421340 22421637 -78958884 + AluJo SINE Alu 1 295 -17 2470 216 93 48 chr15 22421637 22422223 -78958298 - Charlie2 DNA MER1_type -225 2637 1987 1860 158 18 0 chr15 22422223 22422507 -78958014 - AluJo SINE Alu -23 289 1 2470 216 93 48 chr15 22422507 22422645 -78957876 - Charlie2 DNA MER1_type -875 1987 1857 21 36 0 0 chr15 22423016 22423044 -78957477 + AT_rich Low_complexity Low_complexity 1 28 0 763 173 0 23 chr15 22423423 22423556 -78956965 + FLAM_A SINE Alu 1 130 -3 1883 200 68 8 chr15 22424227 22424738 -78955783 + MER67A LTR ERV1 2 543 0 994 243 47 7 chr15 22425740 22426035 -78954486 - MLT1E1 LTR MaLR 0 654 312 613 212 23 0 chr15 22426067 22426199 -78954322 + FLAM_C SINE Alu 9 143 0 1170 190 190 0 chr15 22426200 22426495 -78954026 - MLT1E1 LTR MaLR -303 351 1 287 49 24 0 chr15 22427580 22427621 -78952900 + (TG)n Simple_repeat Simple_repeat 2 43 0 3888 141 59 1 chr15 22427626 22428288 -78952233 - Tigger3b DNA MER2_type 0 1231 532 1395 176 0 0 chr15 22428288 22428498 -78952023 + AluJb SINE Alu 1 210 -102 1588 143 0 4 chr15 22428603 22428840 -78951681 + AluJb SINE Alu 65 300 -12 800 136 8 0 chr15 22428842 22428960 -78951561 - Tigger3b DNA MER2_type -693 539 421 361 123 18 0 chr15 22428965 22429022 -78951499 + AluJ/FRAM SINE Alu 229 286 -16 22 0 0 0 chr15 22429023 22429045 -78951476 + AT_rich Low_complexity Low_complexity 1 22 0 1989 154 59 31 chr15 22429045 22429434 -78951087 - Tigger3b DNA MER2_type -830 401 2 392 141 0 35 chr15 22429445 22429530 -78950991 + (TA)n Simple_repeat Simple_repeat 1 82 0 194 302 32 0 chr15 22430338 22430401 -78950120 - MER5A DNA MER1_type -52 137 73 276 316 137 5 chr15 22430476 22430666 -78949855 + MIR SINE MIR 46 260 -2 658 208 8 8 chr15 22430914 22431044 -78949477 - AluJo SINE Alu -178 134 5 276 130 0 0 chr15 22431361 22431407 -78949114 + (T)n Simple_repeat Simple_repeat 1 46 0 270 218 0 18 chr15 22431407 22431462 -78949059 - MER31A LTR ERV1 -84 401 348 1949 230 6 10 chr15 22432833 22433318 -78947203 + L1MC4a LINE L1 3763 4317 -1829 665 172 0 0 chr15 22436275 22436391 -78944130 + FLAM_C SINE Alu 1 116 -17 22 0 0 0 chr15 22436391 22436413 -78944108 + AT_rich Low_complexity Low_complexity 1 22 0 933 255 150 39 chr15 22436611 22437098 -78943423 + L1MC4a LINE L1 5287 5827 -1981 3521 177 18 9 chr15 22437731 22438398 -78942123 + L1MC1 LINE L1 5660 6332 -1 2419 72 0 0 chr15 22438782 22439074 -78941447 + AluY SINE Alu 1 292 -19 1333 188 16 38 chr15 22439303 22439622 -78940899 + AluJo SINE Alu 1 312 0 299 328 58 43 chr15 22439885 22440211 -78940310 + L1MC/D LINE L1 5435 5765 -2043 1646 176 7 17 chr15 22440661 22440951 -78939570 + AluJo SINE Alu 1 287 -25 317 110 49 24 chr15 22440951 22441033 -78939488 + GA-rich Low_complexity Low_complexity 1 84 0 1587 219 28 14 chr15 22442114 22442205 -78938316 + MER47A DNA MER2_type 3 91 -2232 1357 161 142 11 chr15 22442205 22442472 -78938049 + AluJb SINE Alu 1 302 0 1587 219 28 14 chr15 22442472 22442783 -78937738 + MER47A DNA MER2_type 91 366 0 282 56 0 0 chr15 22442783 22442819 -78937702 + (TTA)n Simple_repeat Simple_repeat 3 38 0 507 283 26 71 chr15 22442874 22443100 -78937421 - L2 LINE L2 0 3313 3098 1681 162 10 24 chr15 22443145 22443435 -78937086 + AluJo SINE Alu 26 311 -1 324 263 107 39 chr15 22444236 22444417 -78936104 - L1ME3A LINE L1 0 6170 5976 2225 217 53 31 chr15 22444429 22444941 -78935580 - L1ME2 LINE L1 -75 6325 5795 3082 145 10 2 chr15 22444941 22445423 -78935098 - MER66B LTR ERV1 0 486 1 2225 217 53 31 chr15 22445423 22445545 -78934976 - L1ME2 LINE L1 -605 5795 5677 374 261 57 78 chr15 22445543 22445588 -78934933 - L1ME2 LINE L1 -2613 3769 3725 * 1706 183 0 37 chr15 22445588 22445911 -78934610 - AluJb SINE Alu -1 311 1 374 261 57 78 chr15 22445911 22446095 -78934426 - L1ME2 LINE L1 -2657 3725 3545 862 293 103 28 chr15 22446128 22446977 -78933544 - L1ME2 LINE L1 -4451 2112 1005 2368 109 0 0 chr15 22447169 22447472 -78933049 - AluSx SINE Alu -9 303 1 541 314 29 77 chr15 22447688 22448012 -78932509 - L1ME2 LINE L1 -5963 600 299 1589 183 24 10 chr15 22448012 22448302 -78932219 + AluJo SINE Alu 1 294 -18 541 314 29 77 chr15 22448302 22448394 -78932127 - L1ME2 LINE L1 -6264 299 204 1049 115 26 19 chr15 22448896 22449052 -78931469 + AluSg/x SINE Alu 154 310 0 198 0 0 0 chr15 22449090 22449112 -78931409 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 4029 77 0 0 chr15 22449113 22449635 -78930886 - L1PA8 LINE L1 0 6172 5651 1796 132 13 56 chr15 22449786 22450089 -78930432 - AluJo SINE Alu -18 294 5 2516 69 0 0 chr15 22450557 22450860 -78929661 - AluY SINE Alu -8 303 1 2180 196 50 14 chr15 22452305 22452492 -78928029 + MLT1C LTR MaLR 4 183 -284 222 37 0 0 chr15 22452492 22452519 -78928002 + (CA)n Simple_repeat Simple_repeat 2 28 0 2180 196 50 14 chr15 22452519 22452771 -78927750 + MLT1C LTR MaLR 183 459 -8 623 196 0 0 chr15 22452851 22452963 -78927558 + AluJb SINE Alu 200 311 -1 61 37 0 0 chr15 22453127 22453209 -78927312 + AT_rich Low_complexity Low_complexity 1 82 0 2075 211 79 68 chr15 22453209 22453464 -78927057 - L1MD2 LINE L1 -148 6211 5960 2032 158 0 0 chr15 22453464 22453775 -78926746 + AluJb SINE Alu 1 311 -1 2075 211 79 68 chr15 22453775 22454141 -78926380 - L1MD2 LINE L1 -399 5960 5583 245 276 32 0 chr15 22454210 22454295 -78926226 - L1M4 LINE L1 -256 5922 5831 635 154 0 0 chr15 22454320 22454424 -78926097 + AluJb SINE Alu 201 304 -8 843 152 25 93 chr15 22454424 22454519 -78926002 + ERVL-B3 LTR ERVL 5378 5478 -176 746 167 0 23 chr15 22454519 22454651 -78925870 + AluJ SINE Alu 2 130 -172 843 152 25 93 chr15 22454651 22454718 -78925803 + ERVL-B3 LTR ERVL 5478 5548 -106 735 189 0 0 chr15 22454718 22454840 -78925681 + FLAM_C SINE Alu 1 122 -11 843 152 25 93 chr15 22454840 22454973 -78925548 + ERVL-B3 LTR ERVL 5548 5654 0 2552 157 7 176 chr15 22454973 22455080 -78925441 + MLT2B3 LTR ERVL 1 124 -430 1854 167 3 0 chr15 22455080 22455362 -78925159 - AluJo SINE Alu -25 287 5 2552 157 7 176 chr15 22455362 22455828 -78924693 + MLT2B3 LTR ERVL 124 516 -38 812 88 19 32 chr15 22455829 22456050 -78924471 + (TCTA)n Simple_repeat Simple_repeat 1 217 0 903 100 17 17 chr15 22456098 22456278 -78924243 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 302 98 66 33 chr15 22456292 22456353 -78924168 + MLT2B1 LTR ERVL 458 520 0 1021 167 13 0 chr15 22456886 22457042 -78923479 + AluJ SINE Alu 133 290 -22 26 30 0 0 chr15 22457364 22457397 -78923124 + AT_rich Low_complexity Low_complexity 1 33 0 282 281 20 92 chr15 22457597 22457750 -78922771 - L2 LINE L2 -3 3310 3169 307 370 53 53 chr15 22458094 22458359 -78922162 - HAL1 LINE L1 -1405 1102 838 464 305 54 18 chr15 22458394 22458561 -78921960 - MER5B DNA MER1_type 0 178 6 2482 63 0 3 chr15 22458755 22459057 -78921464 - AluSg SINE Alu -3 307 7 25 0 0 0 chr15 22459337 22459362 -78921159 + AT_rich Low_complexity Low_complexity 1 25 0 2231 103 14 0 chr15 22459382 22459674 -78920847 - AluSp SINE Alu -17 296 1 498 135 0 58 chr15 22459862 22459960 -78920561 + FLAM_C SINE Alu 45 137 -1 2014 141 17 3 chr15 22459960 22460251 -78920270 - AluSx SINE Alu -17 295 1 32 0 0 0 chr15 22460256 22460288 -78920233 + AT_rich Low_complexity Low_complexity 1 32 0 210 345 84 8 chr15 22460717 22460836 -78919685 + L2 LINE L2 2467 2594 -720 686 273 167 9 chr15 22461192 22461628 -78918893 + L2 LINE L2 2452 2956 -358 303 320 144 7 chr15 22461910 22462063 -78918458 + L2 LINE L2 2895 3068 -245 285 311 48 10 chr15 22462103 22462206 -78918315 + L2 LINE L2 3201 3307 -6 22 0 0 0 chr15 22464355 22464377 -78916144 + GC_rich Low_complexity Low_complexity 1 22 0 242 169 42 28 chr15 22464422 22464493 -78916028 + (GGCTG)n Simple_repeat Simple_repeat 5 76 0 1903 177 10 3 chr15 22465800 22466110 -78914411 + AluJb SINE Alu 1 312 0 1617 193 18 12 chr15 22466901 22467228 -78913293 - L1MB3 LINE L1 -193 5990 5662 336 24 0 0 chr15 22467697 22467738 -78912783 + (CA)n Simple_repeat Simple_repeat 2 42 0 372 133 0 0 chr15 22470010 22470070 -78910451 + (TG)n Simple_repeat Simple_repeat 2 61 0 425 233 63 126 chr15 22470371 22470574 -78909947 + LTR41 LTR ERVL 461 644 -129 1383 197 21 45 chr15 22470574 22470863 -78909658 - AluJo SINE Alu -30 282 1 425 233 63 126 chr15 22470863 22470930 -78909591 + LTR41 LTR ERVL 644 714 -59 317 219 59 3 chr15 22470945 22471051 -78909470 + LTR50 LTR ERVL 665 794 -1 2370 131 54 28 chr15 22472962 22473153 -78907368 + Tigger2 DNA MER2_type 2280 2465 -253 2566 63 0 0 chr15 22473153 22473452 -78907069 - AluY SINE Alu -12 299 1 2370 131 54 28 chr15 22473452 22473688 -78906833 + Tigger2 DNA MER2_type 2465 2718 0 391 103 17 0 chr15 22474361 22474419 -78906102 + Alu SINE Alu 1 59 -241 350 231 90 30 chr15 22475162 22475296 -78905225 - MIR SINE MIR -74 188 47 309 252 206 13 chr15 22475335 22475490 -78905031 - MER5A DNA MER1_type -2 187 3 240 250 250 0 chr15 22475797 22475873 -78904648 - MIR SINE MIR -50 212 118 193 262 0 0 chr15 22476894 22476936 -78903585 + MER5A DNA MER1_type 40 81 -108 1496 173 0 12 chr15 22477763 22478011 -78902510 - AluJo SINE Alu -67 245 1 1533 219 54 74 chr15 22478011 22478388 -78902133 - L1MC5 LINE L1 -308 7653 7291 240 35 0 0 chr15 22478388 22478417 -78902104 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1533 219 54 74 chr15 22478417 22478664 -78901857 - L1MC5 LINE L1 -670 7291 7041 1925 107 73 25 chr15 22478693 22479049 -78901472 - THE1C LTR MaLR -2 373 1 698 203 57 28 chr15 22479062 22479274 -78901247 - L1MD3 LINE L1 0 7995 7778 3066 231 22 66 chr15 22479295 22479594 -78900927 - L1M4 LINE L1 -1825 4321 4010 312 27 0 0 chr15 22479594 22479631 -78900890 + (TG)n Simple_repeat Simple_repeat 2 38 0 3066 231 22 66 chr15 22479631 22480085 -78900436 - L1M4 LINE L1 -2136 4010 3626 2383 96 3 6 chr15 22480085 22480397 -78900124 - AluSq SINE Alu -2 311 1 3066 231 22 66 chr15 22480397 22480704 -78899817 - L1M4 LINE L1 -2520 3626 3307 570 243 110 57 chr15 22480954 22481255 -78899266 + L1MD2 LINE L1 1 317 -6223 2829 235 52 17 chr15 22481442 22483302 -78897219 + L1MD2 LINE L1 4391 6553 -2 1470 254 62 16 chr15 22483298 22483746 -78896775 + L1MD2 LINE L1 5881 6349 -10 * 1299 199 88 6 chr15 22485912 22486243 -78894278 - L1MA9 LINE L1 -258 6054 5697 769 169 26 56 chr15 22486258 22486453 -78894068 + L1MA9 LINE L1 6042 6230 -82 442 252 37 7 chr15 22486574 22486709 -78893812 - L1MD3 LINE L1 -1066 6929 6791 318 147 73 147 chr15 22486740 22486849 -78893672 - L1MC5 LINE L1 -1000 6961 6861 550 152 0 0 chr15 22486849 22486941 -78893580 - AluJ/FRAM SINE Alu -3 309 218 198 0 0 0 chr15 22486961 22486983 -78893538 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1215 246 66 33 chr15 22487810 22488395 -78892126 - LTR48B LTR ERV1 0 644 1 570 163 10 0 chr15 22488909 22489007 -78891514 - FLAM_C SINE Alu -16 127 29 21 0 0 0 chr15 22489433 22489454 -78891067 + AT_rich Low_complexity Low_complexity 1 21 0 1984 224 52 20 chr15 22491412 22491953 -78888568 + MER74A LTR ERVL 1 558 0 2069 86 0 36 chr15 22492104 22492384 -78888137 + AluY SINE Alu 38 307 -4 998 233 97 3 chr15 22493497 22493785 -78886736 - MLT1B LTR MaLR 0 390 76 2474 82 3 0 chr15 22494055 22494359 -78886162 - AluSg SINE Alu -5 305 1 1849 148 13 20 chr15 22495810 22496113 -78884408 - AluJo SINE Alu -10 302 2 23 0 0 0 chr15 22496528 22496551 -78883970 + AT_rich Low_complexity Low_complexity 1 23 0 1313 270 53 18 chr15 22496551 22497056 -78883465 - L1MB4 LINE L1 -26 6154 5632 783 201 154 21 chr15 22497061 22497295 -78883226 - L1MB5 LINE L1 -36 6138 5874 2400 117 0 0 chr15 22497320 22497627 -78882894 - AluSg SINE Alu -3 307 1 266 267 19 29 chr15 22497653 22497758 -78882763 - L1MC5 LINE L1 -44 7917 7814 351 0 0 0 chr15 22499117 22499156 -78881365 + (TG)n Simple_repeat Simple_repeat 2 40 0 803 94 0 9 chr15 22499827 22499933 -78880588 + AluSq/x SINE Alu 3 107 -206 277 306 74 33 chr15 22500068 22500189 -78880332 - L2 LINE L2 -1 3312 3187 2334 92 3 7 chr15 22501568 22501871 -78878650 - AluSp SINE Alu -8 305 4 381 129 0 0 chr15 22502314 22502384 -78878137 + (TG)n Simple_repeat Simple_repeat 1 70 0 2243 174 47 5 chr15 22503997 22504115 -78876406 - LTR34 LTR ERV1 0 699 588 2335 91 3 10 chr15 22504115 22504413 -78876108 + AluSx SINE Alu 1 296 -16 2243 174 47 5 chr15 22504413 22504737 -78875784 - LTR34 LTR ERV1 -111 588 238 742 179 0 21 chr15 22504739 22504879 -78875642 - FLAM_C SINE Alu -6 137 1 405 157 0 0 chr15 22504885 22504955 -78875566 - LTR34 LTR ERV1 -463 236 167 2459 189 20 2 chr15 22504955 22505404 -78875117 - LTR32 LTR ERVL 0 471 15 577 228 82 0 chr15 22505404 22505562 -78874959 - LTR34 LTR ERV1 -528 171 1 262 323 82 25 chr15 22505656 22505814 -78874707 - MIR SINE MIR -69 193 27 1781 185 97 0 chr15 22506042 22506393 -78874128 - MLT1B LTR MaLR -5 385 1 2439 78 3 10 chr15 22506653 22506962 -78873559 - AluSg SINE Alu -3 307 1 1417 182 94 42 chr15 22507340 22507626 -78872895 + AluJb SINE Alu 3 303 -9 224 274 97 0 chr15 22508444 22508557 -78871964 - MER5B DNA MER1_type -1 177 54 363 323 41 19 chr15 22508575 22508762 -78871759 - MIR SINE MIR -59 149 3 24 0 0 0 chr15 22509244 22509268 -78871253 + AT_rich Low_complexity Low_complexity 1 24 0 291 234 170 50 chr15 22509768 22509871 -78870650 + MIR SINE MIR 25 151 -57 2542 99 29 0 chr15 22509871 22510216 -78870305 + THE1A LTR MaLR 1 355 0 291 234 170 50 chr15 22510216 22510253 -78870268 + MIR SINE MIR 151 182 -26 1681 183 22 36 chr15 22511447 22511803 -78868718 - MLT1A1 LTR MaLR 0 365 15 360 294 171 0 chr15 22511965 22512111 -78868410 + MER5A DNA MER1_type 19 189 0 331 169 99 0 chr15 22512590 22512661 -78867860 - MLT2B1 LTR ERVL -435 85 8 1088 119 0 40 chr15 22513016 22513192 -78867329 + AluSq SINE Alu 140 308 -5 2010 110 3 3 chr15 22513742 22514041 -78866480 - AluSp SINE Alu -14 299 1 3572 272 105 30 chr15 22518160 22519825 -78860696 + L1MEc LINE L1 15 1804 -4592 188 67 33 0 chr15 22521576 22521606 -78858915 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 744 153 0 0 chr15 22521610 22521721 -78858800 - FLAM_C SINE Alu -32 111 1 2248 110 0 0 chr15 22522432 22522740 -78857781 - AluSx SINE Alu -4 308 1 281 297 110 0 chr15 22523109 22523200 -78857321 + MIR SINE MIR 96 196 -66 533 94 106 12 chr15 22523340 22523425 -78857096 + HY4 scRNA scRNA 1 93 0 23 0 0 0 chr15 22523425 22523448 -78857073 + AT_rich Low_complexity Low_complexity 1 23 0 2016 175 54 26 chr15 22523773 22524236 -78856285 + L1 LINE L1 4456 4931 -1215 256 346 10 29 chr15 22524834 22524938 -78855583 + L2 LINE L2 3171 3272 0 1525 236 61 21 chr15 22525300 22525774 -78854747 + MLT1D LTR MaLR 6 498 -7 218 233 53 41 chr15 22526736 22526847 -78853674 - MIR SINE MIR -48 214 106 785 250 9 14 chr15 22527947 22528163 -78852358 - MER96B DNA MER1_type? -195 222 8 1040 142 21 16 chr15 22528468 22528658 -78851863 - AluJb SINE Alu -7 305 115 2353 144 64 0 chr15 22530936 22531360 -78849161 + L1MA7 LINE L1 5835 6285 -6 1439 143 135 12 chr15 22531810 22532069 -78848452 - AluJb SINE Alu -21 291 1 2372 117 90 12 chr15 22532093 22532494 -78848027 - MSTB1 LTR MaLR 0 432 1 22 0 0 0 chr15 22533861 22533883 -78846638 + AT_rich Low_complexity Low_complexity 1 22 0 240 352 29 9 chr15 22534056 22534161 -78846360 + MIR3 SINE MIR 93 199 -9 2352 81 0 0 chr15 22535055 22535352 -78845169 + AluSp SINE Alu 1 297 -16 1390 155 9 94 chr15 22536539 22536880 -78843641 + AluJo SINE Alu 1 312 0 1051 112 31 0 chr15 22536980 22537141 -78843380 + AluSg/x SINE Alu 133 298 -12 858 231 23 14 chr15 22538277 22538493 -78842028 + MER20 DNA MER1_type 1 218 -1 243 0 0 0 chr15 22538633 22538660 -78841861 + (CA)n Simple_repeat Simple_repeat 1 27 0 1711 146 3 14 chr15 22538965 22539259 -78841262 + AluJb SINE Alu 1 291 -21 346 315 74 31 chr15 22539881 22540043 -78840478 + MIR SINE MIR 73 241 -21 1527 177 7 17 chr15 22540475 22540609 -78839912 + AluJo SINE Alu 3 137 -175 2182 82 0 0 chr15 22540609 22540923 -78839598 + AluY SINE Alu 1 311 0 1527 177 7 17 chr15 22540923 22541088 -78839433 + AluJo SINE Alu 137 299 -13 3124 192 112 36 chr15 22541298 22541444 -78839077 - L1MB8 LINE L1 -10 6168 6034 1569 179 0 27 chr15 22541444 22541741 -78838780 - AluJo SINE Alu -23 289 1 3124 192 112 36 chr15 22541741 22542543 -78837978 - L1MB8 LINE L1 -144 6034 5154 446 116 74 0 chr15 22542547 22542642 -78837879 - L1MA8 LINE L1 -5 6286 6185 375 145 48 46 chr15 22542667 22542720 -78837801 + L1MA8 LINE L1 6073 6124 -167 2129 89 26 0 chr15 22542720 22543023 -78837498 - AluY SINE Alu 0 311 1 375 145 48 46 chr15 22543023 22543078 -78837443 + L1MA8 LINE L1 6124 6184 -107 279 59 0 0 chr15 22543124 22543158 -78837363 + L1MA8 LINE L1 6182 6215 -76 234 125 25 0 chr15 22543128 22543168 -78837353 + L1MA7 LINE L1 6186 6226 -65 * 2029 139 0 0 chr15 22543439 22543748 -78836773 + AluSx SINE Alu 1 309 -3 1469 169 23 0 chr15 22543763 22544024 -78836497 - L1MA5 LINE L1 -9 6291 6025 1654 240 52 9 chr15 22544382 22544820 -78835701 - MLT1C LTR MaLR 0 467 11 243 310 98 44 chr15 22546635 22547022 -78833499 + L2 LINE L2 2566 2973 -341 326 224 139 73 chr15 22547764 22548023 -78832498 + L1ME4a LINE L1 5589 5864 -257 5084 218 83 37 chr15 22548062 22549887 -78830634 - L1M4 LINE L1 -3139 3505 1766 1572 148 0 0 chr15 22549887 22550152 -78830369 - AluSx SINE Alu 0 322 58 1646 170 7 14 chr15 22550155 22550444 -78830077 - AluJb SINE Alu -25 287 1 5084 218 83 37 chr15 22550444 22551673 -78828848 - L1M4 LINE L1 -4879 1765 282 198 0 0 0 chr15 22551678 22551700 -78828821 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 678 220 68 0 chr15 22551710 22551842 -78828679 - FRAM SINE Alu -35 141 1 1072 209 8 32 chr15 22551853 22552106 -78828415 - L1M4 LINE L1 -6289 253 7 1597 179 16 7 chr15 22552218 22552526 -78827995 - AluJb SINE Alu -1 311 1 615 313 0 6 chr15 22552678 22552857 -78827664 + MER58A DNA MER1_type 46 223 -1 224 365 56 0 chr15 22553277 22553384 -78827137 + MIR SINE MIR 80 192 -70 192 306 120 19 chr15 22554076 22554184 -78826337 + MIR SINE MIR 33 151 -57 281 256 105 0 chr15 22554511 22554597 -78825924 - L1ME4a LINE L1 -222 5899 5805 1499 172 38 7 chr15 22554889 22555180 -78825341 - AluJo SINE Alu 0 312 13 392 276 163 63 chr15 22555198 22555517 -78825004 - L1ME4a LINE L1 -787 5359 5009 447 320 115 40 chr15 22555746 22556243 -78824278 - L1ME4a LINE L1 -1456 4690 4157 4983 157 39 4 chr15 22556255 22557352 -78823169 - L1PB4 LINE L1 -7 6149 5016 893 208 120 0 chr15 22759548 22759916 -78620605 + LTR54 LTR ERV1 1 450 -60 785 245 63 100 chr15 22759947 22760506 -78620015 - MLT1E LTR MaLR -4 589 1 1200 230 109 35 chr15 22760832 22761236 -78619285 - MER57B LTR ERV1 0 434 1 182 330 11 23 chr15 22761458 22761546 -78618975 - L2 LINE L2 -255 3017 2931 1040 162 47 11 chr15 22762900 22763091 -78617430 + MLT1A1 LTR MaLR 9 206 -159 2022 192 8 6 chr15 22763135 22763495 -78617026 - MLT1A1 LTR MaLR 0 365 5 1644 219 24 4 chr15 22763499 22763869 -78616652 - MLT1A1-int LTR MaLR 0 1651 1306 3027 179 22 72 chr15 22764241 22764444 -78616077 - MLT1A1-int LTR MaLR -1031 704 492 2354 90 40 0 chr15 22764444 22764745 -78615776 - AluSq SINE Alu 0 313 1 3027 179 22 72 chr15 22764745 22765282 -78615239 - MLT1A1-int LTR MaLR -1243 492 1 186 189 0 0 chr15 22765282 22765319 -78615202 + T-rich Low_complexity Low_complexity 1 37 0 2404 105 0 9 chr15 22765321 22765636 -78614885 - AluSx SINE Alu 0 312 1 1736 188 79 9 chr15 22765645 22765986 -78614535 - MLT1A1 LTR MaLR 0 365 1 199 353 12 12 chr15 22767156 22767241 -78613280 + L2 LINE L2 3188 3272 0 225 264 127 9 chr15 22767545 22767655 -78612866 - L2 LINE L2 -223 3049 2927 642 275 85 35 chr15 22767984 22768094 -78612427 + MLT1C LTR MaLR 3 106 -361 2372 92 0 10 chr15 22768094 22768397 -78612124 - AluSc SINE Alu -7 302 3 642 275 85 35 chr15 22768397 22768725 -78611796 + MLT1C LTR MaLR 106 464 -3 748 210 82 20 chr15 22769827 22770022 -78610499 + MLT2B2 LTR ERVL 1 207 -308 390 233 11 0 chr15 22770058 22770148 -78610373 + MLT2D LTR ERVL 316 406 -8 290 302 56 16 chr15 22770423 22770549 -78609972 + MIR SINE MIR 126 256 -6 1139 219 77 28 chr15 22770570 22770922 -78609599 + MLT1C LTR MaLR 6 374 -93 1326 211 111 4 chr15 22771944 22772060 -78608461 + AluJo SINE Alu 1 103 -209 213 39 0 0 chr15 22772060 22772086 -78608435 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1326 211 111 4 chr15 22772086 22772248 -78608273 + AluJo SINE Alu 103 309 -3 749 214 0 0 chr15 22772273 22772404 -78608117 + FLAM_A SINE Alu 1 131 -2 492 271 171 65 chr15 22772476 22772967 -78607554 + MLT1H LTR MaLR 7 549 0 43 47 0 0 chr15 22773180 22773244 -78607277 + AT_rich Low_complexity Low_complexity 1 64 0 2317 97 3 31 chr15 22773911 22774232 -78606289 - AluSp SINE Alu -1 312 1 495 219 0 0 chr15 22776970 22777075 -78603446 + MER45A DNA AcHobo 72 176 -2 35 24 0 0 chr15 22778531 22778573 -78601948 + AT_rich Low_complexity Low_complexity 1 42 0 1063 178 14 14 chr15 22779237 22779451 -78601070 + MLT1A1 LTR MaLR 1 214 -151 3718 103 19 17 chr15 22779451 22779977 -78600544 - MER1A DNA MER1_type 0 527 1 5074 153 37 9 chr15 22780581 22781808 -78598713 + L1PA16 LINE L1 4730 5999 -167 1989 106 81 0 chr15 22781808 22782091 -78598430 + AluSx SINE Alu 1 306 -6 5074 153 37 9 chr15 22782091 22782262 -78598259 + L1PA16 LINE L1 5999 6164 -2 238 353 0 17 chr15 22782806 22782925 -78597596 + MER58 DNA MER1_type 10 126 -2294 1692 185 34 25 chr15 22783248 22783604 -78596917 + MER46B DNA MER2_type 1 234 -2 526 154 0 39 chr15 22783724 22783828 -78596693 - L1MA6 LINE L1 0 6300 6201 1445 141 4 21 chr15 22783892 22784126 -78596395 + AluJb SINE Alu 1 230 -82 181 358 52 22 chr15 22784433 22784567 -78595954 + L3b LINE CR1 1102 1239 -344 2090 99 57 3 chr15 22785183 22785465 -78595056 - AluSc SINE Alu -12 297 1 247 340 81 36 chr15 22787131 22787440 -78593081 - L1MC/D LINE L1 -1976 5832 5510 367 335 51 10 chr15 22789210 22789407 -78591114 - L2 LINE L2 -10 3303 3099 473 175 28 34 chr15 22789422 22789967 -78590554 + (TG)n Simple_repeat Simple_repeat 1 542 0 243 79 0 0 chr15 22790085 22790123 -78590398 + (CGGGGG)n Simple_repeat Simple_repeat 3 40 0 1242 145 291 27 chr15 22790327 22790664 -78589857 - MSTA LTR MaLR 0 428 3 191 281 61 37 chr15 22791256 22791338 -78589183 - MER5B DNA MER1_type -82 96 13 1890 166 0 12 chr15 22791558 22791901 -78588620 - L1MB5 LINE L1 -194 6478 6140 1752 156 43 3 chr15 22791912 22792238 -78588283 + MER47A DNA MER2_type 28 366 0 1220 167 31 0 chr15 22792242 22792470 -78588051 - L1MB5 LINE L1 -540 6138 5904 * 3256 226 64 29 chr15 22792464 22793522 -78586999 - L1MB5 LINE L1 -1621 5023 3929 436 320 101 4 chr15 22793647 22793875 -78586646 - L1MB5 LINE L1 -6291 251 2 191 259 12 86 chr15 22794554 22794635 -78585886 - MIR3 SINE MIR -8 200 126 1765 73 20 4 chr15 22794743 22794988 -78585533 + L1PA10 LINE L1 5918 6166 -2 1740 149 11 0 chr15 22795883 22796152 -78584369 + AluSx SINE Alu 41 312 0 390 362 54 0 chr15 22796427 22796612 -78583909 - MIR SINE MIR -1 261 67 2089 98 79 25 chr15 22797797 22798153 -78582368 + THE1C LTR MaLR 1 375 0 759 233 132 35 chr15 22798226 22798517 -78582004 - MLT1E2 LTR MaLR -258 396 51 469 278 115 53 chr15 22798589 22798798 -78581723 - MIR SINE MIR -35 227 6 1304 167 40 4 chr15 22802250 22802478 -78578043 - MER46A DNA MER2_type 0 236 1 1896 216 98 5 chr15 22803449 22803876 -78576645 - MLT1C LTR MaLR 0 467 1 371 252 86 29 chr15 22804482 22804621 -78575900 - L2 LINE L2 -2 3311 3165 1972 129 0 4 chr15 22804699 22804978 -78575543 + AluSx SINE Alu 27 304 -8 227 318 45 23 chr15 22807245 22807377 -78573144 - LTR16B LTR ERVL -6 458 324 3248 233 38 55 chr15 22807666 22809676 -78570845 + L1MD2 LINE L1 4147 6133 -226 254 231 201 22 chr15 22809682 22809816 -78570705 + L1MD2 LINE L1 6191 6348 -11 21 0 0 0 chr15 22811345 22811366 -78569155 + AT_rich Low_complexity Low_complexity 1 21 0 2003 115 0 11 chr15 22811839 22812175 -78568346 + AluSx SINE Alu 1 333 0 228 226 0 19 chr15 22812472 22812525 -78567996 + C-rich Low_complexity Low_complexity 1 52 0 22 35 7 0 chr15 22815632 22815708 -78564813 + GC_rich Low_complexity Low_complexity 1 36 0 22 103 0 0 chr15 22815746 22815824 -78564697 + GC_rich Low_complexity Low_complexity 1 78 0 943 155 0 12 chr15 22816685 22816853 -78563668 + AluJb SINE Alu 1 166 -146 1920 121 0 0 chr15 22817291 22817564 -78562957 - AluSx SINE Alu -36 276 4 719 252 133 13 chr15 22817641 22817875 -78562646 - MIR SINE MIR 0 262 1 2785 10 0 0 chr15 22818406 22818717 -78561804 + AluYb8 SINE Alu 1 311 -7 289 276 0 23 chr15 22819382 22819469 -78561052 - L1ME3 LINE L1 -7 6155 6071 1877 177 88 20 chr15 22820954 22821048 -78559473 - L1MC2 LINE L1 0 6344 6258 361 36 36 0 chr15 22821048 22821103 -78559418 + (CA)n Simple_repeat Simple_repeat 2 58 0 1877 177 88 20 chr15 22821103 22821449 -78559072 - L1MC2 LINE L1 -86 6258 5874 315 291 103 14 chr15 22821900 22822266 -78558255 - L1ME LINE L1 -4869 1671 1262 2635 124 41 5 chr15 22822372 22822783 -78557738 - MSTB LTR MaLR 0 426 1 22 0 0 0 chr15 22823713 22823735 -78556786 + AT_rich Low_complexity Low_complexity 1 22 0 408 289 162 7 chr15 22823936 22824078 -78556443 + MER5A DNA MER1_type 18 181 -8 507 335 31 11 chr15 22825998 22826189 -78554332 - L2 LINE L2 0 3313 3119 2013 113 3 0 chr15 22826410 22826694 -78553827 + AluSg SINE Alu 1 285 -25 2232 175 31 26 chr15 22826820 22827277 -78553244 + MLT1C LTR MaLR 9 467 0 3969 112 28 0 chr15 22827322 22827886 -78552635 - LTR19B LTR ERV1 0 580 1 629 207 39 96 chr15 22828110 22828318 -78552203 - MLT1A1 LTR MaLR -2 363 168 797 199 145 11 chr15 22828944 22829310 -78551211 - MER31B LTR ERV1 0 543 1 1764 157 7 0 chr15 22831194 22831481 -78549040 - AluJb SINE Alu -23 289 1 282 289 11 22 chr15 22833102 22833192 -78547329 - MLT1J1 LTR MaLR -141 305 217 330 286 62 34 chr15 22833206 22833384 -78547137 - MLT1J LTR MaLR -327 184 2 458 327 44 10 chr15 22835883 22836088 -78544433 - L3 LINE CR1 -151 1426 1215 1652 134 0 96 chr15 22836289 22836632 -78543889 + AluY SINE Alu 1 310 -1 197 357 31 10 chr15 22836860 22836958 -78543563 + MIR3 SINE MIR 102 201 -7 1997 136 110 18 chr15 22837310 22837700 -78542821 + MSTB LTR MaLR 1 426 0 218 176 20 0 chr15 22839182 22839233 -78541288 + (TGAA)n Simple_repeat Simple_repeat 3 54 0 309 266 187 12 chr15 22841395 22841636 -78538885 + LTR16A1 LTR ERVL 75 357 -100 439 248 16 16 chr15 22841730 22841855 -78538666 + LTR67 LTR ERVL 426 550 -7 1204 203 127 152 chr15 22841877 22842655 -78537866 - LTR41 LTR ERVL -10 763 5 389 279 36 89 chr15 22843491 22843738 -78536783 + L1ME4a LINE L1 5885 6118 -3 252 212 30 15 chr15 22846329 22846395 -78534126 + CT-rich Low_complexity Low_complexity 4 70 0 386 312 95 18 chr15 22846512 22846797 -78533724 - MLT1J1 LTR MaLR -8 438 132 198 0 0 0 chr15 22846988 22847010 -78533511 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 782 286 84 35 chr15 22847642 22847897 -78532624 - MLT1E LTR MaLR 0 593 321 1949 110 52 55 chr15 22847897 22848262 -78532259 - THE1B LTR MaLR 0 364 1 782 286 84 35 chr15 22848262 22848293 -78532228 - MLT1E LTR MaLR -272 321 293 250 304 13 0 chr15 22848371 22848450 -78532071 - MLT1E LTR MaLR -436 157 78 2041 122 0 3 chr15 22848568 22848871 -78531650 - AluSg SINE Alu -8 302 1 2223 89 7 0 chr15 22852349 22852651 -78527870 - AluSx SINE Alu -8 304 1 4796 172 35 22 chr15 22852787 22854098 -78526423 + L1MB3 LINE L1 4849 6175 -8 1629 201 0 7 chr15 22855533 22855837 -78524684 - AluJo SINE Alu -10 302 1 940 218 13 0 chr15 22856201 22856426 -78524095 - L1MA4 LINE L1 -3 6297 6070 2287 63 0 16 chr15 22856679 22856994 -78523527 + AluY SINE Alu 1 310 -1 327 305 35 0 chr15 22857188 22857318 -78523203 + MIR SINE MIR 25 166 -96 253 264 239 39 chr15 22857821 22857976 -78522545 - MIR SINE MIR -26 236 51 2570 51 0 6 chr15 22858025 22858337 -78522184 + AluY SINE Alu 1 310 -1 286 290 0 0 chr15 22859186 22859255 -78521266 + MIR SINE MIR 76 144 -64 644 300 59 39 chr15 22859520 22859857 -78520664 + L1MB1 LINE L1 242 585 -5546 239 125 429 0 chr15 22860072 22860128 -78520393 + MADE1 DNA Mariner 1 80 0 376 257 30 10 chr15 22860150 22860252 -78520269 + L1M3d LINE L1 898 999 -5132 * 3923 230 66 64 chr15 22860242 22861087 -78519434 + L1MB1 LINE L1 662 1504 -4706 449 161 0 0 chr15 22861087 22861168 -78519353 + AluJ/FRAM SINE Alu 232 312 0 3923 230 66 64 chr15 22861168 22861707 -78518814 + L1MB1 LINE L1 1504 2040 -4170 2619 36 0 10 chr15 22861707 22862010 -78518511 + AluY SINE Alu 1 300 -11 3923 230 66 64 chr15 22862010 22863307 -78517214 + L1MB1 LINE L1 2040 3435 -2775 2697 236 30 10 chr15 22863311 22864043 -78516478 + L1MB1 LINE L1 4493 5239 -971 1151 184 22 4 chr15 22864040 22864268 -78516253 + L1MB1 LINE L1 5778 6009 -223 * 505 287 35 54 chr15 22864506 22864767 -78515754 - L2 LINE L2 -4 3309 3054 689 346 26 8 chr15 22864896 22865402 -78515119 + L1MEc LINE L1 1284 1798 -4598 2481 61 0 3 chr15 22865530 22865827 -78514694 - AluY SINE Alu -15 296 1 452 291 30 39 chr15 22866346 22866580 -78513941 - L1ME2 LINE L1 -10 6154 5923 * 871 234 68 0 chr15 22866577 22866825 -78513696 + L1ME2 LINE L1 5647 5911 -253 3391 98 34 23 chr15 22867006 22867535 -78512986 - L1PA14 LINE L1 -1 6160 5626 1381 176 0 5 chr15 22869381 22869602 -78510919 - AluJb SINE Alu -21 291 72 1656 107 5 32 chr15 22870892 22871419 -78509102 + MER4B LTR ERV1 1 610 0 279 324 6 59 chr15 22871427 22871581 -78508940 - MIR SINE MIR -62 146 24 276 30 0 0 chr15 22871852 22871885 -78508636 + (GA)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr15 22872116 22872138 -78508383 + AT_rich Low_complexity Low_complexity 1 22 0 199 377 0 0 chr15 22872666 22872743 -78507778 + L2 LINE L2 3196 3272 0 256 300 12 12 chr15 22872891 22872971 -78507550 + Charlie8 DNA MER1_type 154 233 -2184 1889 284 86 57 chr15 22873012 22874151 -78506370 + L1MC4a LINE L1 -244 927 -5353 1802 254 36 39 chr15 22874189 22875024 -78505497 + L1MC4a LINE L1 1314 2307 -4256 2490 207 33 37 chr15 22875031 22875686 -78504835 + L1MC4a LINE L1 2329 2981 -3401 1522 164 114 18 chr15 22875686 22875966 -78504555 - AluJb SINE Alu -5 307 1 2490 207 33 37 chr15 22875966 22876037 -78504484 + L1MC4a LINE L1 2981 3051 -3331 376 304 62 0 chr15 22876038 22876150 -78504371 + MER94 DNA DNA 15 133 -1 704 110 0 42 chr15 22876377 22876495 -78504026 - L1MA3 LINE L1 -19 6286 6174 793 165 15 0 chr15 22876622 22876755 -78503766 - AluJo SINE Alu -171 141 7 5265 182 37 7 chr15 22876965 22877651 -78502870 - L1 LINE L1 -1049 5097 4365 207 0 0 0 chr15 22877651 22877674 -78502847 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 5265 182 37 7 chr15 22877674 22878060 -78502461 - L1 LINE L1 -1781 4365 3992 5383 160 14 23 chr15 22878067 22878276 -78502245 + L1MA7 LINE L1 5042 5251 -1040 2072 122 26 13 chr15 22878276 22878580 -78501941 - AluSx SINE Alu 0 312 5 5383 160 14 23 chr15 22878580 22879617 -78500904 + L1MA7 LINE L1 5251 6281 -10 229 239 150 17 chr15 22879664 22879898 -78500623 + L1MC4a LINE L1 3199 3463 -2919 450 53 0 0 chr15 22880145 22880202 -78500319 + (CA)n Simple_repeat Simple_repeat 2 58 0 240 35 0 0 chr15 22880201 22880230 -78500291 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 241 264 41 50 chr15 22880235 22880356 -78500165 + L1MC4a LINE L1 3759 3878 -2504 413 329 82 30 chr15 22880569 22881675 -78498846 + L1MC4a LINE L1 4306 5469 -913 3443 243 83 110 chr15 22881705 22881804 -78498717 + L1MC4a LINE L1 5518 5618 -2426 2340 113 0 0 chr15 22881804 22882114 -78498407 - AluSg SINE Alu 0 310 1 3443 243 83 110 chr15 22882114 22884460 -78496061 + L1MC4a LINE L1 5618 7897 -147 1549 294 86 11 chr15 22886264 22886420 -78494101 + L1ME3 LINE L1 5272 5415 -747 2287 79 3 13 chr15 22886420 22886724 -78493797 + AluSc SINE Alu 1 301 -8 1549 294 86 11 chr15 22886724 22887230 -78493291 + L1ME3 LINE L1 5415 5984 -178 1860 97 0 73 chr15 22887351 22887665 -78492856 + AluSx SINE Alu 20 312 0 1158 183 10 0 chr15 22888356 22888558 -78491963 + AluJb SINE Alu 103 306 -6 368 183 11 0 chr15 22888565 22888658 -78491863 + GA-rich Low_complexity Low_complexity 3 96 0 22 56 0 0 chr15 22890342 22890378 -78490143 + AT_rich Low_complexity Low_complexity 1 36 0 3324 110 24 24 chr15 22890509 22891121 -78489400 + L1PA15 LINE L1 5069 5681 -484 1799 174 10 3 chr15 22891121 22891420 -78489101 + AluJb SINE Alu 1 301 -11 3324 110 24 24 chr15 22891420 22891497 -78489024 + L1PA15 LINE L1 5681 5756 -409 940 166 7 0 chr15 22891504 22891655 -78488866 + FRAM SINE Alu 9 160 -16 2134 122 18 9 chr15 22891655 22891991 -78488530 + L1PA15 LINE L1 5814 6152 -13 2107 123 3 0 chr15 22891998 22892300 -78488221 + AluSx SINE Alu 1 303 -9 352 298 191 6 chr15 22892675 22892843 -78487678 + MLT1H LTR MaLR 83 281 -268 283 170 0 0 chr15 22892869 22892916 -78487605 + L1M1 LINE L1 5816 5862 -438 1313 92 0 0 chr15 22893132 22893305 -78487216 + AluSc SINE Alu 134 306 -3 249 33 0 0 chr15 22893427 22893457 -78487064 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 235 300 190 0 chr15 22893600 22893700 -78486821 + MLT1H LTR MaLR 431 549 0 6116 76 47 37 chr15 22893830 22895339 -78485182 + SVA Other Other 327 1449 0 1000 182 0 18 chr15 22895480 22895677 -78484844 - AluJo SINE Alu 0 312 135 338 141 0 16 chr15 22895677 22895741 -78484780 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 770 176 8 0 chr15 22895741 22895872 -78484649 - AluJo SINE Alu -169 133 2 261 0 0 0 chr15 22896597 22896626 -78483895 + (A)n Simple_repeat Simple_repeat 1 29 0 810 281 9 5 chr15 22897229 22897446 -78483075 + L1MEc LINE L1 32 249 -6147 2258 264 36 70 chr15 22897469 22897631 -78482890 + L1MEc LINE L1 415 581 -5815 2541 127 7 56 chr15 22897631 22898081 -78482440 - MSTA LTR MaLR 0 428 1 2258 264 36 70 chr15 22898081 22899117 -78481404 + L1MEc LINE L1 581 1572 -4824 1142 215 66 51 chr15 22899117 22899452 -78481069 + MER2 DNA MER2_type 5 344 0 2258 264 36 70 chr15 22899452 22899489 -78481032 + L1MEc LINE L1 1572 1609 -4787 2008 324 82 30 chr15 22899513 22900391 -78480130 + L1M4b LINE L1 -562 361 -5923 577 256 65 38 chr15 22900963 22901563 -78478958 + L1M4b LINE L1 655 1238 -5325 2282 68 0 10 chr15 22901563 22901855 -78478666 + AluY SINE Alu 1 289 -22 270 0 0 0 chr15 22901863 22901893 -78478628 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 577 256 65 38 chr15 22901893 22902351 -78478170 + L1M4b LINE L1 1244 1989 -4574 25 31 0 0 chr15 22902439 22902471 -78478050 + AT_rich Low_complexity Low_complexity 1 32 0 2362 254 29 16 chr15 22902943 22903791 -78476730 + L1M4b LINE L1 2299 3112 -3270 13488 162 24 19 chr15 22903796 22906497 -78474024 + L1MA2 LINE L1 3022 5706 -2017 2387 87 3 0 chr15 22906497 22906806 -78473715 + AluY SINE Alu 1 310 -1 13488 162 24 19 chr15 22906806 22907437 -78473084 + L1MA2 LINE L1 5706 6332 -1391 2059 124 0 0 chr15 22907437 22907711 -78472810 + AluSg SINE Alu 25 298 -12 13488 162 24 19 chr15 22907711 22909024 -78471497 + L1MA2 LINE L1 6332 7721 -2 1571 218 66 61 chr15 22909055 22909614 -78470907 + L1MB7 LINE L1 5613 6174 -10 2696 234 76 26 chr15 22909650 22910855 -78469666 + L1MEc LINE L1 1997 3242 -2973 249 276 0 0 chr15 22910938 22910996 -78469525 + MIR3 SINE MIR 149 206 -2 1696 71 0 5 chr15 22911296 22911506 -78469015 - AluY SINE Alu -69 242 34 1631 152 4 12 chr15 22914731 22914987 -78465534 - AluJo SINE Alu -19 293 40 317 324 9 19 chr15 22916457 22916565 -78463956 - MIR3 SINE MIR -18 190 84 564 262 38 0 chr15 22916974 22917157 -78463364 + L1M4 LINE L1 2687 2876 -3270 307 190 0 0 chr15 22917165 22917223 -78463298 + L1ME LINE L1 5685 5742 -422 1326 99 0 20 chr15 22917343 22917544 -78462977 - L1PA13 LINE L1 -4 6159 5963 2446 198 118 39 chr15 22917544 22917728 -78462793 + L1M4 LINE L1 2867 3035 -3111 2359 74 0 16 chr15 22917728 22918040 -78462481 - AluY SINE Alu -4 307 1 2446 198 118 39 chr15 22918040 22918831 -78461690 + L1M4 LINE L1 3035 3919 -2227 22 35 0 0 chr15 22969893 22969922 -78410599 + AT_rich Low_complexity Low_complexity 1 29 0 1504 223 76 3 chr15 22970079 22970446 -78410075 + MER89 LTR ERV1 166 559 0 890 173 162 5 chr15 22970772 22970957 -78409564 + AluJo SINE Alu 81 294 -18 33 25 0 0 chr15 22971644 22971684 -78408837 + AT_rich Low_complexity Low_complexity 1 40 0 1983 157 141 11 chr15 22971735 22972044 -78408477 + MSTB LTR MaLR 3 371 -55 2049 103 65 3 chr15 22972044 22972335 -78408186 - AluSg SINE Alu -1 309 1 1983 157 141 11 chr15 22972335 22972400 -78408121 + MSTB LTR MaLR 371 426 0 36 65 0 49 chr15 22973017 22973140 -78407381 + AT_rich Low_complexity Low_complexity 1 117 0 795 153 13 38 chr15 22973140 22973297 -78407224 - FRAM SINE Alu -26 150 1 2378 165 85 6 chr15 22973594 22974395 -78406126 - L1M2 LINE L1 -536 5755 4895 1340 172 93 26 chr15 22974447 22974715 -78405806 - AluJo SINE Alu -25 287 2 3603 153 38 11 chr15 22975370 22976003 -78404518 - L1MA5 LINE L1 0 6300 5651 2253 174 62 24 chr15 22976243 22976709 -78403812 + MER72 LTR ERV1 239 722 0 1066 151 25 10 chr15 22978628 22978827 -78401694 - MER65A LTR ERV1 0 445 244 22 0 0 0 chr15 22978934 22978956 -78401565 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr15 22979146 22979169 -78401352 + AT_rich Low_complexity Low_complexity 1 23 0 406 285 65 27 chr15 22979362 22979548 -78400973 + L1ME2 LINE L1 5707 5899 -265 349 262 44 44 chr15 22979594 22979833 -78400688 - L1ME LINE L1 -5007 1076 834 1179 129 0 0 chr15 22979839 22980009 -78400512 - AluSp SINE Alu -7 306 137 557 285 52 22 chr15 22980019 22980133 -78400388 - L1ME LINE L1 -5194 876 767 2062 119 22 19 chr15 22980133 22980445 -78400076 - AluSq SINE Alu 0 313 1 557 285 52 22 chr15 22980445 22980700 -78399821 - L1ME LINE L1 -5303 767 508 2133 142 0 0 chr15 22981513 22981816 -78398705 - AluSq SINE Alu 0 313 11 1378 66 12 0 chr15 22981971 22982137 -78398384 + L1PA7 LINE L1 5985 6152 -2 21 0 0 0 chr15 22982148 22982169 -78398352 + AT_rich Low_complexity Low_complexity 1 21 0 2469 122 98 0 chr15 22982172 22982550 -78397971 + MER4C LTR ERV1 51 465 0 718 283 101 24 chr15 22982550 22983097 -78397424 - L1MCa LINE L1 -3985 2622 2034 6944 140 46 9 chr15 22983109 22984291 -78396230 - Tigger3b DNA MER2_type -1 1230 6 384 284 36 47 chr15 22984456 22984701 -78395820 - L1MCa LINE L1 -4452 2155 1800 * 937 263 25 25 chr15 22984700 22984981 -78395540 + L1M4b LINE L1 400 680 -6179 24 0 0 0 chr15 22985599 22985623 -78394898 + AT_rich Low_complexity Low_complexity 1 24 0 596 248 25 12 chr15 22986089 22986250 -78394271 - MER5A DNA MER1_type -26 163 1 720 143 9 0 chr15 22986311 22986416 -78394105 + AluJb SINE Alu 2 107 -205 2144 165 98 73 chr15 22986783 22987347 -78393174 + MER34C LTR ERV1 1 578 -7 440 277 69 27 chr15 22988394 22988586 -78391935 - MIR SINE MIR -24 238 40 1282 177 53 87 chr15 22989211 22989589 -78390932 + MLT1A1 LTR MaLR 1 365 0 324 0 0 0 chr15 22991868 22991904 -78388617 + (CA)n Simple_repeat Simple_repeat 1 36 0 4797 140 24 40 chr15 22992702 22993135 -78387386 + L1PA14 LINE L1 4343 4781 -1380 2190 104 0 3 chr15 22993135 22993432 -78387089 + AluSx SINE Alu 1 296 -16 4797 140 24 40 chr15 22993432 22994413 -78386108 + L1PA14 LINE L1 4781 5728 -433 3109 97 27 0 chr15 22994513 22994924 -78385597 + L1PA14 LINE L1 5735 6156 -5 1023 173 24 0 chr15 22995296 22995464 -78385057 - FRAM SINE Alu -10 166 1 1609 168 0 42 chr15 22995486 22995795 -78384726 - AluJb SINE Alu -16 296 1 240 111 0 0 chr15 22997155 22997191 -78383330 + (A)n Simple_repeat Simple_repeat 1 36 0 434 288 109 71 chr15 22997253 22997621 -78382900 + L2 LINE L2 2928 3309 -4 2005 112 54 20 chr15 22997696 22997992 -78382529 - AluSx SINE Alu -6 306 1 1721 70 19 0 chr15 22998960 22999173 -78381348 - L1PA7 LINE L1 -3 6151 5935 1953 39 0 4 chr15 22999173 22999402 -78381119 + L1PA7 LINE L1 5718 5945 -209 5692 170 110 78 chr15 23000416 23000992 -78379529 - L1MC3 LINE L1 -7 7778 7222 238 215 0 118 chr15 23000992 23001085 -78379436 - MLT1D LTR MaLR -443 124 43 5692 170 110 78 chr15 23001085 23001959 -78378562 - L1MC3 LINE L1 -563 7222 6187 781 274 109 38 chr15 23002019 23002602 -78377919 + L1MDa LINE L1 1423 2025 -4515 1029 114 60 0 chr15 23002670 23002819 -78377702 - AluSq SINE Alu -12 301 144 2952 117 3 0 chr15 23002819 23003211 -78377310 + MER1A DNA MER1_type 133 525 -4 396 200 0 0 chr15 23003226 23003296 -78377225 - MLT1D LTR MaLR -435 70 1 2465 77 3 0 chr15 23003365 23003664 -78376857 + AluY SINE Alu 1 300 -11 367 282 31 11 chr15 23003854 23004007 -78376514 - L1ME LINE L1 -567 5595 5434 533 289 58 0 chr15 23004208 23004416 -78376105 + L1MDa LINE L1 2858 3077 -3463 249 257 95 0 chr15 23005403 23005477 -78375044 - L2 LINE L2 -4 3268 3188 253 185 154 0 chr15 23007497 23007562 -78372959 - MIR3 SINE MIR -48 160 86 849 158 129 0 chr15 23008565 23008736 -78371785 + LOR1a LTR ERV1 1 193 -304 515 136 45 0 chr15 23008737 23008825 -78371696 + LOR1b LTR ERV1 370 461 0 190 328 156 26 chr15 23009366 23009558 -78370963 - L3 LINE CR1 -41 1536 1320 212 322 299 0 chr15 23009694 23009868 -78370653 - MIR SINE MIR 0 262 37 1758 180 59 73 chr15 23011220 23011703 -78368818 + LTR39 LTR ERV1 1 395 -388 230 158 0 0 chr15 23011673 23011711 -78368810 + MER4D LTR ERV1 244 281 -591 * 2105 175 29 11 chr15 23011749 23012126 -78368395 + LTR39 LTR ERV1 400 783 0 517 235 74 20 chr15 23013582 23013731 -78366790 + MER34 LTR ERV1 1 157 -385 941 189 112 58 chr15 23013797 23014056 -78366465 + AluJb SINE Alu 1 273 -39 671 62 0 14 chr15 23014790 23014890 -78365631 - L1P5 LINE L1 -387 5764 5672 3630 12 5 0 chr15 23014898 23015309 -78365212 + L1HS LINE L1 5741 6153 -2 268 43 21 21 chr15 23015314 23015361 -78365160 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 266 358 98 17 chr15 23017914 23018087 -78362434 - MIR SINE MIR -74 188 2 1273 157 50 5 chr15 23018417 23018822 -78361699 + LTR54 LTR ERV1 8 510 0 2063 159 31 48 chr15 23019111 23019532 -78360989 + L1MB3 LINE L1 5761 6174 -9 222 296 0 0 chr15 23021577 23021631 -78358890 + (TG)n Simple_repeat Simple_repeat 1 54 0 1775 171 39 47 chr15 23021989 23022370 -78358151 + MLT1B LTR MaLR 2 379 -11 480 155 0 0 chr15 23022630 23022769 -78357752 + AluS SINE Alu 227 365 0 231 314 35 0 chr15 23023082 23023168 -78357353 + MIR SINE MIR 51 139 -123 331 260 40 20 chr15 23023312 23023412 -78357109 - L2 LINE L2 0 3313 3212 14220 193 17 15 chr15 23024945 23029057 -78351464 + L1PA15 LINE L1 2047 6164 -1 678 299 104 8 chr15 23029367 23029732 -78350789 + L1ME LINE L1 5329 5728 -393 318 209 32 0 chr15 23030564 23030722 -78349799 + CT-rich Low_complexity Low_complexity 1 163 0 204 40 0 0 chr15 23030722 23030747 -78349774 + (CA)n Simple_repeat Simple_repeat 1 25 0 452 286 65 16 chr15 23031299 23031484 -78349037 + MER58A DNA MER1_type 26 219 -5 440 261 0 6 chr15 23032022 23032202 -78348319 + GA-rich Low_complexity Low_complexity 1 179 0 2117 166 119 5 chr15 23032268 23032647 -78347874 - MSTB LTR MaLR -4 422 1 7456 63 11 0 chr15 23032928 23034027 -78346494 - L1PA7 LINE L1 -3 6151 5049 2703 109 12 0 chr15 23034027 23034430 -78346091 + L1P LINE L1 3199 3606 -2540 489 214 10 0 chr15 23034835 23034933 -78345588 - Tigger5 DNA MER2_type 0 2323 2225 228 202 112 56 chr15 23035070 23035159 -78345362 + MIR SINE MIR 61 154 -108 240 266 159 18 chr15 23035182 23035295 -78345226 - MIR SINE MIR -9 253 125 273 226 107 0 chr15 23036051 23036135 -78344386 + L1MDb LINE L1 1013 1105 -5438 2161 138 0 0 chr15 23036149 23036461 -78344060 + AluSx SINE Alu 1 312 0 1991 100 38 0 chr15 23036464 23036725 -78343796 + AluSc SINE Alu 1 271 -38 264 149 0 0 chr15 23036733 23036780 -78343741 + (GA)n Simple_repeat Simple_repeat 2 48 0 3597 229 106 40 chr15 23036784 23038186 -78342335 + L1MDb LINE L1 1067 2560 -3980 44951 36 3 2 chr15 23038198 23044344 -78336177 + L1PA3 LINE L1 1 6154 -1 4802 176 90 10 chr15 23044362 23046049 -78334472 + L1PA16 LINE L1 4352 6166 0 3612 268 36 26 chr15 23046055 23047480 -78333041 + L1MDb LINE L1 2555 3993 -2547 230 263 18 0 chr15 23047517 23047574 -78332947 + L2 LINE L2 3180 3237 -76 2395 175 25 47 chr15 23047582 23048095 -78332426 + MER34B LTR ERV1 1 502 -63 189 147 0 0 chr15 23048133 23048167 -78332354 + MIR SINE MIR 218 251 -11 285 311 59 8 chr15 23048583 23048702 -78331819 + MIR SINE MIR 4 128 -134 258 384 64 5 chr15 23049394 23049613 -78330908 - MIR SINE MIR -20 242 11 257 127 38 51 chr15 23050044 23050123 -78330398 + (TTATA)n Simple_repeat Simple_repeat 3 80 0 186 171 0 0 chr15 23051392 23051433 -78329088 + (CA)n Simple_repeat Simple_repeat 1 41 0 4066 133 33 9 chr15 23052952 23053590 -78326931 + MER39B LTR ERV1 1 653 0 1739 176 124 21 chr15 23053884 23054321 -78326200 + MER31A LTR ERV1 1 542 -1 2078 173 71 149 chr15 23054366 23055152 -78325369 + LTR8A LTR ERV1 1 725 -2 207 178 22 22 chr15 23055417 23055462 -78325059 + L2 LINE L2 3026 3070 -202 300 250 48 48 chr15 23055860 23055964 -78324557 - MER103 DNA DNA -21 145 42 207 100 0 0 chr15 23056007 23056037 -78324484 + (T)n Simple_repeat Simple_repeat 1 30 0 519 238 81 104 chr15 23057059 23057441 -78323080 + L1MC5 LINE L1 6695 6965 -996 386 19 0 19 chr15 23057441 23057493 -78323028 + (GA)n Simple_repeat Simple_repeat 1 51 0 519 238 81 104 chr15 23057493 23057678 -78322843 + L1MC5 LINE L1 6965 7153 -808 1312 216 16 44 chr15 23058162 23058477 -78322044 - AluJo SINE Alu -6 306 1 982 257 120 14 chr15 23059887 23060245 -78320276 + MSTD LTR MaLR 1 396 0 474 120 0 0 chr15 23060494 23060569 -78319952 + (TA)n Simple_repeat Simple_repeat 1 75 0 1035 268 68 78 chr15 23061430 23062315 -78318206 - L1MEc LINE L1 -4110 2286 1411 370 214 0 12 chr15 23062316 23062400 -78318121 + MLT1A2 LTR MaLR 281 363 -11 309 307 84 46 chr15 23062591 23063044 -78317477 + L2 LINE L2 2808 3277 -36 1514 207 13 0 chr15 23063194 23063499 -78317022 - MLT1A1 LTR MaLR -2 363 55 319 280 19 0 chr15 23066503 23066610 -78313911 + L3 LINE CR1 1179 1287 -290 275 276 21 80 chr15 23067319 23067558 -78312963 + L1MC4 LINE L1 7455 7679 -363 406 266 114 45 chr15 23067687 23067977 -78312544 + L1MC4 LINE L1 7732 8041 -1 481 177 146 10 chr15 23068435 23068531 -78311990 - FRAM SINE Alu -25 151 43 613 175 0 10 chr15 23068656 23068759 -78311762 + AluJo SINE Alu 87 188 -124 506 206 10 0 chr15 23068757 23068859 -78311662 - AluJo/FLAM SINE Alu -209 103 1 * 359 265 31 95 chr15 23070277 23070594 -78309927 + L1M4 LINE L1 4896 5192 -954 1145 199 75 39 chr15 23070604 23070885 -78309636 + LTR40a LTR ERVL 229 519 0 252 284 30 67 chr15 23071064 23071198 -78309323 + HAL1 LINE L1 581 709 -1798 259 261 19 45 chr15 23071341 23071498 -78309023 + HAL1 LINE L1 926 1078 -1429 366 271 66 22 chr15 23071881 23072062 -78308459 + HAL1 LINE L1 1661 1849 -658 360 323 105 28 chr15 23072303 23072583 -78307938 + HAL1 LINE L1 2121 2435 -72 2111 143 0 0 chr15 23072583 23072877 -78307644 - AluSx SINE Alu -18 294 1 360 323 105 28 chr15 23072877 23072949 -78307572 + HAL1 LINE L1 2435 2500 -7 324 286 161 0 chr15 23074379 23074491 -78306030 - MIR SINE MIR -96 166 37 21 0 0 0 chr15 23075390 23075411 -78305110 + AT_rich Low_complexity Low_complexity 1 21 0 2386 244 63 49 chr15 23075419 23075745 -78304776 + L1MD1 LINE L1 27 347 -6193 2455 91 0 0 chr15 23075745 23076054 -78304467 - AluY SINE Alu -2 309 1 2386 244 63 49 chr15 23076054 23077084 -78303437 + L1MD1 LINE L1 347 1558 -4982 1792 240 41 21 chr15 23077135 23077751 -78302770 + L1M4 LINE L1 3544 4171 -1975 280 48 71 0 chr15 23077752 23077794 -78302727 + MER31A LTR ERV1 1 45 -440 1759 209 63 23 chr15 23077798 23078319 -78302202 + L1MCb LINE L1 603 1144 -4901 1432 245 57 33 chr15 23078372 23078911 -78301610 + L1M4 LINE L1 4431 4986 -1160 2532 37 0 3 chr15 23078911 23079210 -78301311 + AluY SINE Alu 1 298 -13 1432 245 57 33 chr15 23079210 23079245 -78301276 + L1M4 LINE L1 4986 5019 -1127 249 136 0 34 chr15 23079360 23079419 -78301102 + L1M LINE L1 5304 5360 -999 * 1759 270 46 16 chr15 23079405 23080206 -78300315 + L1MD1 LINE L1 4861 5685 -855 1423 246 35 22 chr15 23080206 23080609 -78299912 - MLT1D LTR MaLR -90 415 8 2063 183 27 11 chr15 23080612 23081060 -78299461 + L1MD1 LINE L1 6182 6636 0 258 253 40 0 chr15 23082045 23082120 -78298401 - MIR SINE MIR -111 151 74 324 196 0 0 chr15 23082309 23082365 -78298156 - MLT1D LTR MaLR -119 386 331 7262 235 55 51 chr15 23082377 23085588 -78294933 - L1M4 LINE L1 -1298 5346 2149 1981 128 0 11 chr15 23085588 23085898 -78294623 - AluY SINE Alu 0 308 2 7262 235 55 51 chr15 23085898 23086406 -78294115 - L1M4 LINE L1 -4495 2149 1644 778 0 31 0 chr15 23086406 23086503 -78294018 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 7262 235 55 51 chr15 23086503 23088047 -78292474 - L1M4 LINE L1 -5000 1644 16 1630 196 0 7 chr15 23088719 23088999 -78291522 + AluJo SINE Alu 1 278 -34 219 36 0 0 chr15 23089005 23089033 -78291488 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1549 168 80 18 chr15 23089052 23089338 -78291183 + AluJb SINE Alu 9 312 0 2068 101 5 69 chr15 23089484 23089859 -78290662 + THE1A LTR MaLR 5 355 0 1651 219 83 59 chr15 23090328 23090904 -78289617 + LTR68 LTR ERV1 21 610 -130 459 214 68 48 chr15 23091255 23091507 -78289014 + HAL1 LINE L1 899 1155 -1352 3999 184 73 12 chr15 23091633 23092444 -78288077 - MER21B LTR ERV1 -3 860 1 2517 162 30 48 chr15 23092506 23093030 -78287491 + MLT2B3 LTR ERVL 1 515 -39 258 105 0 0 chr15 23093055 23093093 -78287428 + (TCTG)n Simple_repeat Simple_repeat 3 40 0 607 247 77 13 chr15 23093163 23093398 -78287123 + HAL1 LINE L1 1338 1587 -920 329 245 47 0 chr15 23093882 23093988 -78286533 + HAL1 LINE L1 2287 2397 -110 2110 122 0 7 chr15 23096148 23096474 -78284047 - AluSg SINE Alu 0 310 1 1521 236 29 52 chr15 23098946 23099717 -78280804 + L1MB3 LINE L1 2798 3550 -2596 * 2521 158 31 8 chr15 23099714 23100414 -78280107 + L1M1 LINE L1 4899 5614 -686 6063 207 37 23 chr15 23100470 23103034 -78277487 + L1MB3 LINE L1 3554 6160 -23 908 136 0 0 chr15 23103889 23104021 -78276500 - FLAM_C SINE Alu -11 132 1 2085 183 38 2 chr15 23104590 23105017 -78275504 - L1MB3 LINE L1 -120 6063 5622 559 279 47 12 chr15 23105736 23105908 -78274613 + MIR SINE MIR 37 214 -48 1878 178 67 13 chr15 23106471 23106859 -78273662 - L1MA5 LINE L1 -1 6299 5891 1871 179 68 0 chr15 23108503 23108839 -78271682 - MLT1A1 LTR MaLR -6 359 1 517 280 45 40 chr15 23109592 23109792 -78270729 + MIR SINE MIR 32 232 -30 3606 80 35 8 chr15 23109846 23110334 -78270187 - L1MA2 LINE L1 -2 6302 5802 365 259 0 0 chr15 23110377 23110458 -78270063 + MIR SINE MIR 34 114 -148 227 233 0 33 chr15 23111684 23111744 -78268777 - Charlie8 DNA MER1_type 0 2417 2360 1541 290 36 63 chr15 23112021 23112625 -78267896 + MLT1E LTR MaLR 1 588 -5 1479 236 44 35 chr15 23112678 23113132 -78267389 - MER39 LTR ERV1 0 707 250 207 336 71 18 chr15 23113642 23113755 -78266766 + L3 LINE CR1 618 736 -841 512 297 102 25 chr15 23114097 23114333 -78266188 + MIR SINE MIR 9 262 0 21 0 0 0 chr15 23114339 23114360 -78266161 + AT_rich Low_complexity Low_complexity 1 21 0 270 303 311 8 chr15 23114379 23114511 -78266010 + L3 LINE CR1 1282 1453 -124 625 264 25 0 chr15 23114924 23115083 -78265438 + MIR SINE MIR 28 190 -72 1454 192 17 118 chr15 23115084 23115490 -78265031 - MLT1A1 LTR MaLR 0 365 1 222 219 0 0 chr15 23115504 23115545 -78264976 + CT-rich Low_complexity Low_complexity 2 42 0 1757 200 63 25 chr15 23115795 23116241 -78264280 + MER31B LTR ERV1 1 543 0 22 88 0 0 chr15 23117807 23117864 -78262657 + AT_rich Low_complexity Low_complexity 1 57 0 239 200 178 30 chr15 23117864 23117999 -78262522 + L1MC/D LINE L1 3030 3184 -2962 2666 230 82 26 chr15 23118112 23119231 -78261290 + L1MC/D LINE L1 4399 5587 -772 216 0 0 0 chr15 23119231 23119255 -78261266 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2666 230 82 26 chr15 23119255 23119289 -78261232 + L1MC/D LINE L1 5587 5618 -741 4498 246 126 58 chr15 23120508 23120848 -78259673 + L1MDa LINE L1 4 319 -6221 2013 113 10 7 chr15 23120848 23121139 -78259382 - AluSx SINE Alu -20 292 1 4498 246 126 58 chr15 23121139 23124022 -78256499 + L1MDa LINE L1 319 3432 -3108 727 174 0 9 chr15 23124023 23124138 -78256383 + 5S rRNA rRNA 2 115 -6 2245 169 125 5 chr15 23125433 23125841 -78254680 + MSTB2 LTR MaLR 1 457 0 869 260 174 0 chr15 23126016 23126297 -78254224 + MLT1F LTR MaLR 213 542 0 289 276 46 0 chr15 23126348 23126435 -78254086 - L2 LINE L2 -1 3312 3222 764 224 167 5 chr15 23127012 23127204 -78253317 + MER58A DNA MER1_type 2 224 0 2608 195 43 4 chr15 23127627 23128186 -78252335 + LTR69 LTR ERVL 1 581 -7 1839 211 49 0 chr15 23129220 23129628 -78250893 - L1MA6 LINE L1 0 6300 5873 204 254 16 0 chr15 23130203 23130266 -78250255 + (TA)n Simple_repeat Simple_repeat 2 65 0 1172 260 14 33 chr15 23131004 23131370 -78249151 + L1MEc LINE L1 36 394 -6002 * 3085 226 53 40 chr15 23131356 23132434 -78248087 + L1M4 LINE L1 2922 4013 -2133 1128 185 28 5 chr15 23132439 23132655 -78247866 + AluJo SINE Alu 79 299 -13 3975 222 93 18 chr15 23132661 23132691 -78247830 + L1M4 LINE L1 4023 4049 -2097 2278 120 0 0 chr15 23132691 23132999 -78247522 + AluSq SINE Alu 1 308 -5 3975 222 93 18 chr15 23132999 23133917 -78246604 + L1M4 LINE L1 4049 5076 -1070 2268 116 3 0 chr15 23133917 23134227 -78246294 + AluSp SINE Alu 3 313 0 3975 222 93 18 chr15 23134227 23134435 -78246086 + L1M4 LINE L1 5076 5267 -879 456 324 17 12 chr15 23134623 23134796 -78245725 - LTR10B LTR ERV1 0 505 332 1659 283 39 27 chr15 23135122 23135906 -78244615 - HERVI LTR ERV1 -1788 5836 4091 1194 59 13 0 chr15 23136138 23136290 -78244231 - AluY SINE Alu -4 307 154 23 68 0 0 chr15 23138454 23138498 -78242023 + AT_rich Low_complexity Low_complexity 1 44 0 257 135 19 0 chr15 23138516 23138568 -78241953 + (TA)n Simple_repeat Simple_repeat 2 54 0 341 312 127 12 chr15 23139202 23139375 -78241146 - HAL1 LINE L1 -605 1902 1710 842 168 15 0 chr15 23139406 23139543 -78240978 + MER2 DNA MER2_type 1 139 -206 282 242 45 15 chr15 23139538 23139604 -78240917 + MER2 DNA MER2_type 278 345 0 * 1904 171 68 11 chr15 23139635 23140004 -78240517 + MLT1B LTR MaLR 1 390 0 624 232 45 68 chr15 23141003 23141223 -78239298 + MER87 LTR ERV1 174 388 -153 2372 66 13 0 chr15 23141226 23141527 -78238994 - AluY SINE Alu -6 305 1 1276 162 42 37 chr15 23141528 23141769 -78238752 - MLT1D LTR MaLR -263 242 1 230 51 51 0 chr15 23142778 23142817 -78237704 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 1812 197 70 12 chr15 23142896 23143241 -78237280 + MLT1A1 LTR MaLR 1 365 0 284 309 62 0 chr15 23144890 23144971 -78235550 + MIR3 SINE MIR 108 193 -15 2182 98 18 0 chr15 23146959 23147244 -78233277 + AluSx SINE Alu 1 290 -22 423 250 9 9 chr15 23147281 23147389 -78233132 + MER3 DNA MER1_type 78 185 -24 387 41 0 0 chr15 23148839 23148888 -78231633 + (TC)n Simple_repeat Simple_repeat 2 50 0 297 0 0 0 chr15 23148887 23148920 -78231601 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 2177 152 6 30 chr15 23149717 23150078 -78230443 + THE1A LTR MaLR 4 355 0 468 181 0 0 chr15 23150449 23150521 -78230000 + AluJ/FLAM SINE Alu 2 73 -239 1295 183 65 48 chr15 23151433 23151877 -78228644 + MER89 LTR ERV1 9 559 0 401 304 190 27 chr15 23152879 23153248 -78227273 + MLT1J LTR MaLR 83 511 0 22 56 0 0 chr15 23155555 23155591 -78224930 + AT_rich Low_complexity Low_complexity 1 36 0 1169 136 61 24 chr15 23155750 23155963 -78224558 + MER65A LTR ERV1 1 221 -224 201 267 33 33 chr15 23355963 23356023 -78024498 + MIR3 SINE MIR 97 156 -52 978 115 0 7 chr15 23356150 23356289 -78024232 + AluJo SINE Alu 3 140 -172 247 344 21 0 chr15 23356304 23356400 -78024121 - LTR67 LTR ERVL -29 528 431 1817 182 70 3 chr15 23356414 23356730 -78023791 + L1MB8 LINE L1 5657 6026 -152 180 77 0 0 chr15 23356730 23356756 -78023765 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 1817 182 70 3 chr15 23356756 23356864 -78023657 + L1MB8 LINE L1 6026 6125 -53 308 85 0 41 chr15 23356864 23356924 -78023597 - MADE1 DNA Mariner -41 39 1 909 171 0 11 chr15 23357647 23357823 -78022698 - L1MB3 LINE L1 -1 6182 6009 1567 195 0 3 chr15 23357842 23358144 -78022377 - AluSx SINE Alu -9 303 3 2851 224 31 27 chr15 23358321 23359269 -78021252 + L1P LINE L1 2318 3268 -2878 468 248 29 0 chr15 23360603 23360740 -78019781 - L1M4 LINE L1 -2109 4037 3897 698 183 122 28 chr15 23360741 23360921 -78019600 - MSTA LTR MaLR 0 428 232 393 100 238 0 chr15 23360923 23361003 -78019518 - MSTA LTR MaLR -329 99 1 4048 152 10 23 chr15 23361007 23361697 -78018824 - MSTA-int LTR MaLR -4 1576 896 462 206 319 58 chr15 23361852 23361939 -78018582 - MLT1E1 LTR MaLR -301 353 290 2389 73 3 22 chr15 23361939 23362256 -78018265 - AluY SINE Alu 0 311 1 462 206 319 58 chr15 23362256 23362444 -78018077 - MLT1E1 LTR MaLR -364 290 6 348 158 0 0 chr15 23362447 23362504 -78018017 + MER69 DNA AcHobo 2467 2523 -3 2094 116 0 23 chr15 23362704 23363007 -78017514 - AluSq SINE Alu -17 296 1 1511 194 38 3 chr15 23363010 23363303 -78017218 - AluJo SINE Alu -8 304 2 631 201 26 53 chr15 23363306 23363495 -78017026 + MER39 LTR ERV1 433 616 -91 258 105 0 0 chr15 23363497 23363535 -78016986 + (TCTCC)n Simple_repeat Simple_repeat 5 42 0 2136 110 0 7 chr15 23363535 23363817 -78016704 - AluSx SINE Alu -32 280 1 1127 266 31 40 chr15 23364447 23364872 -78015649 - MER90 LTR ERV1 -4 610 190 1949 116 3 20 chr15 23364874 23365177 -78015344 - AluY SINE Alu -11 300 3 354 154 15 0 chr15 23365277 23365342 -78015179 - AluS SINE Alu -236 67 2 339 167 167 0 chr15 23365343 23365415 -78015106 + Tigger5 DNA MER2_type 2240 2323 0 1754 128 39 0 chr15 23366218 23366499 -78014022 - AluY SINE Alu -9 302 11 1332 181 17 0 chr15 23366631 23366863 -78013658 + HERVL18 LTR ERVL 5812 6047 0 2065 153 35 75 chr15 23366928 23367300 -78013221 + LTR18A LTR ERVL 1 357 0 2161 93 0 64 chr15 23367316 23367628 -78012893 + AluSc SINE Alu 1 292 -17 354 267 193 0 chr15 23367797 23367932 -78012589 + MIR SINE MIR 49 209 -53 844 320 31 9 chr15 23367961 23368283 -78012238 + LTR16A LTR ERVL 18 346 -104 805 289 32 66 chr15 23368290 23368441 -78012080 + HERV16 LTR ERVL 2 157 -4839 2181 121 0 10 chr15 23368441 23368746 -78011775 + AluSx SINE Alu 1 302 -10 805 289 32 66 chr15 23368746 23368974 -78011547 + HERV16 LTR ERVL 157 368 -4628 1124 262 23 35 chr15 23369087 23369519 -78011002 + MER90 LTR ERV1 181 607 -7 1129 225 172 9 chr15 23370331 23370656 -78009865 - MER21B LTR ERV1 -459 404 27 443 205 13 0 chr15 23370694 23370772 -78009749 - MER21B LTR ERV1 -773 90 12 392 177 38 0 chr15 23371727 23371806 -78008715 + MER119 DNA MER1_type 501 582 -1 483 230 111 15 chr15 23371911 23372046 -78008475 - MER58A DNA MER1_type 0 148 1 305 287 41 33 chr15 23372641 23372763 -78007758 - MIR SINE MIR -70 192 70 34 93 0 0 chr15 23373017 23373114 -78007407 + AT_rich Low_complexity Low_complexity 1 97 0 1831 159 3 7 chr15 23373131 23373440 -78007081 - AluSg SINE Alu -2 308 1 1542 165 60 7 chr15 23373445 23373730 -78006791 - AluSx SINE Alu -12 300 1 192 40 0 0 chr15 23374221 23374246 -78006275 + (TG)n Simple_repeat Simple_repeat 2 26 0 1205 207 28 21 chr15 23374252 23374537 -78005984 - AluJo SINE Alu -21 291 5 201 39 0 0 chr15 23374675 23374701 -78005820 + (CA)n Simple_repeat Simple_repeat 2 27 0 1010 278 7 7 chr15 23375365 23375660 -78004861 - AluSq SINE Alu -8 295 1 11648 91 2 3 chr15 23376751 23378404 -78002117 - L1P LINE L1 -1673 4473 2822 1337 139 30 30 chr15 23379850 23380080 -78000441 + MER30 DNA MER1_type 1 230 0 460 282 42 0 chr15 23380171 23380313 -78000208 - L1MD3 LINE L1 -10 7985 7838 579 217 23 8 chr15 23380323 23380452 -78000069 + U8 snRNA snRNA 4 134 -2 311 139 82 180 chr15 23380497 23380676 -77999845 - L1MC3 LINE L1 -175 7820 7444 1770 143 0 0 chr15 23380704 23380969 -77999552 - AluSg SINE Alu -45 265 1 421 234 9 9 chr15 23381008 23381115 -77999406 - L1MD3 LINE L1 -325 7670 7564 457 303 16 20 chr15 23381498 23381742 -77998779 + L1MB7 LINE L1 5891 6133 -51 660 249 24 6 chr15 23382255 23382420 -77998101 + AluJb SINE Alu 115 282 -30 288 111 0 0 chr15 23382420 23382465 -77998056 + (TA)n Simple_repeat Simple_repeat 2 46 0 1252 253 28 22 chr15 23382466 23382830 -77997691 + L1MB2 LINE L1 5777 6142 -29 609 320 18 4 chr15 23383402 23383630 -77996891 - MLT1D LTR MaLR 0 505 275 357 193 68 0 chr15 23384859 23384947 -77995574 + MSTC LTR MaLR 1 94 -334 228 281 12 49 chr15 23385097 23385179 -77995342 - L2 LINE L2 -3 3269 3191 5719 70 1 4 chr15 23385862 23386581 -77993940 + L1PA3 LINE L1 5439 6155 0 1491 232 41 13 chr15 23386657 23387122 -77993399 - L1MDb LINE L1 -5264 1145 668 385 279 88 59 chr15 23387154 23387358 -77993163 - L1MDb LINE L1 -5934 475 266 395 217 153 21 chr15 23387368 23387557 -77992964 - L1MDb LINE L1 -6187 222 9 211 312 18 37 chr15 23387835 23387944 -77992577 + MER5C DNA MER1_type 18 124 -200 1404 145 188 59 chr15 23388409 23388653 -77991868 + MER47A DNA MER2_type 1 212 -2111 207 0 0 0 chr15 23388653 23388676 -77991845 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2086 112 3 7 chr15 23388682 23388968 -77991553 - AluSp SINE Alu -28 285 1 1404 145 188 59 chr15 23388968 23389040 -77991481 + MER47A DNA MER2_type 216 366 0 2245 73 38 0 chr15 23389840 23390129 -77990392 - AluY SINE Alu -7 304 5 369 109 0 0 chr15 23390133 23390188 -77990333 + (T)n Simple_repeat Simple_repeat 1 55 0 21 89 0 0 chr15 23390714 23390770 -77989751 + AT_rich Low_complexity Low_complexity 1 56 0 28 0 0 0 chr15 23391047 23391075 -77989446 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr15 23391332 23391377 -77989144 + AT_rich Low_complexity Low_complexity 1 45 0 190 243 108 40 chr15 23392478 23392552 -77987969 + MIR SINE MIR 184 262 0 2091 136 31 31 chr15 23392632 23392992 -77987529 + MLT1A1 LTR MaLR 6 365 0 3541 171 89 0 chr15 23393032 23393716 -77986805 + L1MB7 LINE L1 5377 6121 -63 233 250 140 0 chr15 23394595 23394695 -77985826 - L1M4 LINE L1 -1901 4245 4132 282 260 90 0 chr15 23394828 23394928 -77985593 - L1M4 LINE L1 -2231 3915 3807 3869 197 61 11 chr15 23394960 23395518 -77985003 - L1MB7 LINE L1 -19 6165 5636 2085 108 0 0 chr15 23395518 23395797 -77984724 - AluSx SINE Alu 0 312 34 3869 197 61 11 chr15 23395797 23396602 -77983919 - L1MB7 LINE L1 -548 5636 4735 294 213 27 0 chr15 23396640 23396715 -77983806 - MLT1J1 LTR MaLR 0 505 429 213 309 32 24 chr15 23396982 23397105 -77983416 + L2 LINE L2 2200 2323 -991 1202 245 128 22 chr15 23397167 23397580 -77982941 + MLT1E2 LTR MaLR 1 457 -169 2352 60 0 13 chr15 23397593 23397895 -77982626 + AluY SINE Alu 1 298 -13 183 369 18 18 chr15 23397991 23398102 -77982419 + L2 LINE L2 2952 3062 -251 948 92 23 8 chr15 23398545 23398675 -77981846 + AluSc SINE Alu 1 132 -177 1852 116 25 63 chr15 23398929 23399248 -77981273 + AluY SINE Alu 1 307 -4 320 265 131 29 chr15 23400147 23400392 -77980129 + L1MEd LINE L1 970 1239 -4880 46 46 0 46 chr15 23400503 23400611 -77979910 + AT_rich Low_complexity Low_complexity 1 103 0 320 268 76 82 chr15 23400875 23401203 -77979318 + L1M4 LINE L1 3630 3955 -2191 340 252 69 23 chr15 23401769 23401900 -77978621 - MLT1J1 LTR MaLR -167 279 143 1050 262 78 31 chr15 23401949 23402373 -77978148 - MLT1J1 LTR MaLR -2 444 1 7608 36 0 3 chr15 23402535 23403742 -77976779 + L1PA4 LINE L1 4951 6154 -1 523 222 62 11 chr15 23403833 23404023 -77976498 - MSTD LTR MaLR 0 396 178 2071 138 76 15 chr15 23404058 23404399 -77976122 - THE1B LTR MaLR -2 362 1 351 193 68 0 chr15 23404977 23405065 -77975456 + MSTC LTR MaLR 1 94 -334 2439 76 0 7 chr15 23406377 23406681 -77973840 + AluY SINE Alu 1 302 -9 2414 74 0 3 chr15 23406692 23406990 -77973531 + AluY SINE Alu 1 297 -14 522 249 103 56 chr15 23406991 23407224 -77973297 - L1MC4a LINE L1 -1520 6288 6045 441 268 89 89 chr15 23407269 23407377 -77973144 - MIR SINE MIR -14 248 141 1759 113 0 0 chr15 23407377 23407608 -77972913 - AluSx SINE Alu -24 288 58 441 268 89 89 chr15 23407608 23407723 -77972798 - MIR SINE MIR -120 142 25 1978 121 7 0 chr15 23408481 23408753 -77971768 + AluSq SINE Alu 35 308 -5 251 250 31 0 chr15 23408907 23408971 -77971550 - MLT1K LTR MaLR -39 549 484 223 341 8 76 chr15 23409207 23409339 -77971182 + MIR SINE MIR 24 146 -62 459 0 0 0 chr15 23409343 23409394 -77971127 + (TA)n Simple_repeat Simple_repeat 2 52 0 2456 90 0 0 chr15 23409394 23409705 -77970816 - AluY SINE Alu 0 311 1 454 194 21 0 chr15 23410303 23410396 -77970125 - MER103 DNA DNA -21 145 51 280 261 23 23 chr15 23410463 23410551 -77969970 + MER5C DNA MER1_type 37 124 -200 668 160 10 0 chr15 23411013 23411113 -77969408 + Tigger5 DNA MER2_type 1 101 -2222 413 104 78 13 chr15 23411104 23411181 -77969340 + Tigger5 DNA MER2_type 2088 2169 -154 * 905 126 0 4 chr15 23411287 23411521 -77969000 + (GA)n Simple_repeat Simple_repeat 1 232 0 1121 220 22 0 chr15 23411521 23411748 -77968773 - MSTB LTR MaLR -194 232 1 1757 170 22 41 chr15 23411856 23412221 -77968300 + L1MB3 LINE L1 5798 6155 -28 21 57 0 0 chr15 23412229 23412264 -77968257 + AT_rich Low_complexity Low_complexity 1 35 0 718 326 110 12 chr15 23412731 23413302 -77967219 + L1MC4a LINE L1 5256 5882 -1926 313 264 8 72 chr15 23413480 23413605 -77966916 - MLT1H LTR MaLR -238 311 195 782 334 46 13 chr15 23415264 23415673 -77964848 + ERVL LTR ERVL 2644 3111 -2638 2157 114 0 0 chr15 23415702 23416030 -77964491 + AluSg SINE Alu 1 328 0 1206 280 118 30 chr15 23416045 23416914 -77963607 + ERVL LTR ERVL 3229 4216 -1548 479 351 101 4 chr15 23417086 23417334 -77963187 + ERVL LTR ERVL 4769 5040 -724 1682 225 46 38 chr15 23417465 23417638 -77962883 + MLT1C LTR MaLR 3 173 -294 2440 71 7 0 chr15 23417638 23417935 -77962586 + AluY SINE Alu 1 299 -12 1682 225 46 38 chr15 23417935 23418214 -77962307 + MLT1C LTR MaLR 173 459 -8 413 266 0 9 chr15 23418218 23418327 -77962194 + ERVL LTR ERVL 5172 5279 -485 895 228 22 22 chr15 23418449 23418471 -77962050 + MER49 LTR ERV1 1 22 -901 1858 136 0 74 chr15 23418471 23418794 -77961727 + AluSx SINE Alu 1 299 -13 895 228 22 22 chr15 23418794 23418995 -77961526 + MER49 LTR ERV1 21 224 -699 357 82 0 0 chr15 23422300 23422349 -77958172 + (TG)n Simple_repeat Simple_repeat 1 49 0 6429 13 1 0 chr15 23422681 23423394 -77957127 + L1PA3 LINE L1 5442 6155 0 244 233 29 24 chr15 23425079 23425163 -77955358 - MIR SINE MIR -55 153 69 1642 167 7 24 chr15 23425215 23425509 -77955012 - AluJo SINE Alu -23 289 1 2135 188 28 2 chr15 23426341 23426777 -77953744 - L1 LINE L1 -2369 3777 3331 2180 84 7 7 chr15 23426780 23427077 -77953444 - AluY SINE Alu -10 301 5 369 43 0 0 chr15 23427088 23427135 -77953386 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 56 0 0 chr15 23427232 23427268 -77953253 + GC_rich Low_complexity Low_complexity 1 36 0 1951 100 14 4 chr15 23428144 23428424 -77952097 + AluSq SINE Alu 1 283 -30 312 322 0 0 chr15 23428542 23428632 -77951889 + L1MC4 LINE L1 6614 6703 -1339 * 320 253 72 0 chr15 23428570 23428653 -77951868 - L1MC4 LINE L1 -1339 6703 6615 2353 98 0 19 chr15 23428705 23429022 -77951499 + AluSp SINE Alu 1 311 -2 2233 111 16 10 chr15 23429513 23429820 -77950701 + AluSx SINE Alu 1 309 -3 21 36 0 0 chr15 23429912 23429940 -77950581 + AT_rich Low_complexity Low_complexity 1 28 0 679 189 8 8 chr15 23429955 23430077 -77950444 + FLAM_C SINE Alu 6 127 -16 24 0 0 0 chr15 23430169 23430193 -77950328 + AT_rich Low_complexity Low_complexity 1 24 0 355 224 126 75 chr15 23430519 23430637 -77949884 + L1ME4a LINE L1 5743 5874 -247 2356 84 3 0 chr15 23430637 23430933 -77949588 + AluSp SINE Alu 1 297 -16 355 224 126 75 chr15 23430933 23430988 -77949533 + L1ME4a LINE L1 5874 5925 -196 2263 103 0 0 chr15 23431106 23431407 -77949114 + AluY SINE Alu 1 301 -10 21 0 0 0 chr15 23431639 23431660 -77948861 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr15 23431962 23432001 -77948520 + AT_rich Low_complexity Low_complexity 1 39 0 2584 68 0 0 chr15 23435091 23435401 -77945120 - AluY SINE Alu -1 310 1 272 238 62 0 chr15 23435550 23435630 -77944891 + L1ME3 LINE L1 5550 5634 -536 641 256 84 9 chr15 23435633 23435848 -77944673 + L1ME3 LINE L1 5733 5963 -199 215 175 194 48 chr15 23437039 23437142 -77943379 + MIR SINE MIR 86 203 -59 1807 148 4 0 chr15 23437197 23437475 -77943046 + AluSx SINE Alu 1 279 -33 186 43 0 0 chr15 23437480 23437503 -77943018 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2530 51 0 22 chr15 23437856 23438167 -77942354 - AluY SINE Alu -6 305 2 185 81 0 54 chr15 23439438 23439475 -77941046 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 894 241 96 35 chr15 23439736 23440131 -77940390 + LTR37A LTR ERV1 8 426 0 2170 92 0 60 chr15 23441161 23441478 -77939043 - AluY SINE Alu -13 298 1 312 226 60 45 chr15 23442192 23442325 -77938196 - HAL1b LINE L1 -22 1326 1192 736 156 43 0 chr15 23442334 23442512 -77938009 + AluYa5 SINE Alu 136 319 0 29 28 0 0 chr15 23442524 23442560 -77937961 + AT_rich Low_complexity Low_complexity 1 36 0 2149 94 3 7 chr15 23442810 23443119 -77937402 - AluY SINE Alu -3 308 1 865 195 48 68 chr15 23443290 23443541 -77936980 - MLT1A1 LTR MaLR 0 365 120 1415 229 31 14 chr15 23443803 23444161 -77936360 - MLT1A1 LTR MaLR 0 365 2 1306 107 0 19 chr15 23444184 23444389 -77936132 - AluY SINE Alu 0 311 111 237 270 0 0 chr15 23444614 23444626 -77935895 + L2 LINE L2 3251 3262 -51 2307 76 3 7 chr15 23444626 23444927 -77935594 + AluY SINE Alu 1 300 -11 237 270 0 0 chr15 23444927 23444977 -77935544 + L2 LINE L2 3261 3313 0 721 274 45 116 chr15 23445957 23446355 -77934166 + LTR16A LTR ERVL 68 437 -13 773 147 0 23 chr15 23446569 23446698 -77933823 + FLAM_C SINE Alu 1 126 -7 2272 118 0 0 chr15 23447678 23447983 -77932538 + AluSx SINE Alu 1 305 -7 184 313 24 12 chr15 23448182 23448265 -77932256 - L2 LINE L2 -2520 794 711 3652 119 2 4 chr15 23448659 23449165 -77931356 + MER1A DNA MER1_type 25 529 0 1727 199 48 22 chr15 23449459 23449815 -77930706 + MLT1A1 LTR MaLR 1 365 0 405 279 93 11 chr15 23449912 23450095 -77930426 - MIR SINE MIR -30 232 35 2275 112 21 3 chr15 23450369 23450708 -77929813 - L1PA10 LINE L1 -15 6153 5809 872 98 8 0 chr15 23450808 23450931 -77929590 - L1PA10 LINE L1 -357 5811 5688 1192 101 0 0 chr15 23450931 23451100 -77929421 + L1PA10 LINE L1 5518 5686 -482 2420 80 0 0 chr15 23452550 23452849 -77927672 - AluY SINE Alu -12 299 1 242 314 128 0 chr15 23453379 23453481 -77927040 - MIR SINE MIR 0 262 148 257 208 21 0 chr15 23453855 23453951 -77926570 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 4885 125 23 19 chr15 23454558 23455334 -77925187 - MER4E LTR ERV1 0 779 1 25 0 0 0 chr15 23455574 23455599 -77924922 + AT_rich Low_complexity Low_complexity 1 25 0 2457 84 0 3 chr15 23455625 23455936 -77924585 + AluY SINE Alu 1 310 -1 22 35 0 0 chr15 23456285 23456314 -77924207 + AT_rich Low_complexity Low_complexity 1 29 0 1673 93 20 16 chr15 23458001 23458248 -77922273 - THE1C LTR MaLR -127 248 1 1723 144 60 7 chr15 23459120 23459405 -77921116 + AluSx SINE Alu 1 300 -12 2148 130 3 0 chr15 23459410 23459717 -77920804 + AluSg SINE Alu 1 308 -2 48 72 0 0 chr15 23459734 23459831 -77920690 + AT_rich Low_complexity Low_complexity 1 97 0 1930 101 31 11 chr15 23460084 23460370 -77920151 - AluY SINE Alu -14 297 6 24 67 0 0 chr15 23460802 23460847 -77919674 + AT_rich Low_complexity Low_complexity 1 45 0 1399 160 12 78 chr15 23462286 23462500 -77918021 - AluJo SINE Alu -2 310 124 1864 114 28 41 chr15 23462500 23462790 -77917731 + AluSp SINE Alu 2 287 -26 1399 160 12 78 chr15 23462790 23462907 -77917614 - AluJo SINE Alu -188 124 1 1760 135 14 17 chr15 23462941 23463238 -77917283 + AluSp SINE Alu 5 300 -13 550 196 9 0 chr15 23463238 23463350 -77917171 - AluJb SINE Alu -198 114 2 1679 145 23 16 chr15 23463385 23463688 -77916833 + AluSp SINE Alu 5 309 -4 284 136 0 0 chr15 23463688 23463732 -77916789 - AluJb SINE Alu -188 114 71 * 1510 226 91 39 chr15 23463723 23464162 -77916359 + MLT1D LTR MaLR 44 505 0 1767 194 28 33 chr15 23464701 23465097 -77915424 - L1MB2 LINE L1 0 6171 5778 381 43 0 0 chr15 23465097 23465144 -77915377 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 899 168 14 0 chr15 23465144 23465287 -77915234 - AluJb SINE Alu -30 282 138 1636 156 19 16 chr15 23465770 23466078 -77914443 - L1MB7 LINE L1 0 6184 5876 26 30 0 0 chr15 23469108 23469141 -77911380 + AT_rich Low_complexity Low_complexity 1 33 0 518 204 138 13 chr15 23469184 23469336 -77911185 - MIR SINE MIR -64 198 28 2038 109 13 33 chr15 23469489 23469792 -77910729 - AluSx SINE Alu -13 299 3 327 49 0 0 chr15 23470956 23470997 -77909524 + (TG)n Simple_repeat Simple_repeat 2 42 0 251 204 0 0 chr15 23471009 23471058 -77909463 + MIR SINE MIR 184 232 -30 933 249 127 33 chr15 23471088 23471602 -77908919 - HAL1 LINE L1 -877 1630 1069 592 236 126 95 chr15 23471603 23472078 -77908443 - MLT1H1 LTR MaLR 0 555 66 254 234 127 25 chr15 23472145 23472342 -77908179 - HAL1 LINE L1 -1437 1070 854 2324 109 3 0 chr15 23472369 23472672 -77907849 - AluSp SINE Alu -9 304 1 1876 138 10 31 chr15 23472736 23473064 -77907457 + AluJo SINE Alu 1 322 0 346 286 93 65 chr15 23473337 23473627 -77906894 - HAL1 LINE L1 -2167 340 43 902 217 37 28 chr15 23474010 23474227 -77906294 + MER20 DNA MER1_type 1 219 0 2483 63 0 13 chr15 23474357 23474656 -77905865 + AluY SINE Alu 5 299 -12 270 0 0 0 chr15 23475094 23475124 -77905397 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2129 118 7 0 chr15 23475124 23475403 -77905118 - AluY SINE Alu -27 284 1 334 251 99 41 chr15 23478059 23478082 -77902439 + MIR SINE MIR 12 32 -230 2236 99 7 3 chr15 23478082 23478375 -77902146 + AluY SINE Alu 1 294 -17 334 251 99 41 chr15 23478375 23478522 -77901999 + MIR SINE MIR 32 192 -70 225 364 0 0 chr15 23479453 23479552 -77900969 + MIR SINE MIR 31 129 -79 268 275 73 18 chr15 23479616 23479725 -77900796 + L2 LINE L2 3194 3308 -5 225 364 0 0 chr15 23480432 23480531 -77899990 + MIR SINE MIR 31 129 -79 284 241 78 26 chr15 23480588 23480704 -77899817 + L2 LINE L2 3146 3267 -5 233 173 58 0 chr15 23482040 23482092 -77898429 + L1MC4a LINE L1 5885 5939 -1869 282 56 0 0 chr15 23482095 23482131 -77898390 + (TG)n Simple_repeat Simple_repeat 2 37 0 424 217 104 47 chr15 23482317 23482487 -77898034 + MIR SINE MIR 16 192 -58 1926 145 0 26 chr15 23484609 23484912 -77895609 + AluSx SINE Alu 3 297 -15 225 250 102 0 chr15 23484963 23485051 -77895470 + MIR SINE MIR 96 192 -70 917 175 0 18 chr15 23485757 23485923 -77894598 + 7SLRNA srpRNA srpRNA 95 257 -63 228 86 0 0 chr15 23487048 23487083 -77893438 + (TGGGGG)n Simple_repeat Simple_repeat 6 40 0 1953 89 0 98 chr15 23489282 23489607 -77890914 - AluSg SINE Alu -17 293 1 2300 74 0 3 chr15 23489788 23490109 -77890412 - AluY SINE Alu 0 320 1 1350 122 5 0 chr15 23490109 23490298 -77890223 + Charlie3 DNA MER1_type 2517 2706 -4 1304 146 5 0 chr15 23490300 23490520 -77890001 - L1MB3 LINE L1 -259 5924 5704 2067 130 0 3 chr15 23490595 23490880 -77889641 - AluSx SINE Alu -28 284 1 3666 197 46 20 chr15 23490880 23491839 -77888682 - L1MB3 LINE L1 -724 5460 4475 2425 86 0 0 chr15 23492090 23492393 -77888128 + AluY SINE Alu 1 303 -8 1680 155 17 24 chr15 23492530 23492820 -77887701 - AluJb SINE Alu -17 295 8 405 113 141 0 chr15 23492967 23493038 -77887483 - AluJ/FRAM SINE Alu -16 296 216 2039 85 0 0 chr15 23493303 23493550 -77886971 - AluSg SINE Alu -63 247 1 928 103 0 0 chr15 23494063 23494179 -77886342 + AluSq/x SINE Alu 1 116 -197 908 119 0 0 chr15 23494179 23494305 -77886216 + AluSc SINE Alu 166 291 -18 1165 155 5 0 chr15 23494305 23494492 -77886029 + AluSx SINE Alu 119 306 -4 252 299 41 0 chr15 23494590 23494687 -77885834 + MIR SINE MIR 92 192 -70 2457 86 0 13 chr15 23495663 23495978 -77884543 - AluY SINE Alu 0 311 1 1626 71 40 22 chr15 23496263 23496489 -77884032 + MER30 DNA MER1_type 1 230 0 972 155 42 237 chr15 23496580 23496730 -77883791 - L1MD3 LINE L1 -10 7985 7808 622 204 15 8 chr15 23496730 23496862 -77883659 + U8 snRNA snRNA 4 136 0 972 155 42 237 chr15 23496862 23497086 -77883435 - L1MD3 LINE L1 -187 7808 7542 195 42 0 0 chr15 23497086 23497110 -77883411 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2003 110 0 0 chr15 23497111 23497374 -77883147 - AluSg SINE Alu -47 263 1 972 155 42 237 chr15 23497374 23497520 -77883001 - L1MD3 LINE L1 -258 7737 7564 328 279 38 51 chr15 23497992 23498150 -77882371 + L2 LINE L2 3158 3313 0 23 33 0 0 chr15 23498243 23498273 -77882248 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr15 23499037 23499065 -77881456 + AT_rich Low_complexity Low_complexity 1 28 0 2095 119 3 0 chr15 23500446 23500740 -77879781 + AluSq SINE Alu 19 313 0 24 67 0 0 chr15 23501371 23501416 -77879105 + AT_rich Low_complexity Low_complexity 1 45 0 827 150 0 15 chr15 23501721 23501854 -77878667 - FLAM_C SINE Alu -1 132 2 299 270 134 41 chr15 23502175 23502388 -77878133 + MIR SINE MIR 3 225 -37 1857 79 126 14 chr15 23502388 23502666 -77877855 - AluY SINE Alu -2 309 1 406 306 32 24 chr15 23503628 23503876 -77876645 - L1ME LINE L1 -400 5721 5472 241 173 0 0 chr15 23503959 23504011 -77876510 - L1MB3 LINE L1 -14 6169 6118 1770 95 0 9 chr15 23504011 23504242 -77876279 + AluY SINE Alu 68 296 -15 338 128 56 17 chr15 23505579 23505817 -77874704 + (CA)n Simple_repeat Simple_repeat 1 247 0 220 150 68 15 chr15 23505843 23506111 -77874410 + (CA)n Simple_repeat Simple_repeat 1 282 0 267 119 68 8 chr15 23506125 23506243 -77874278 + (CA)n Simple_repeat Simple_repeat 2 126 0 964 217 83 24 chr15 23507049 23507302 -77873219 - L1MB8 LINE L1 0 6178 5911 243 0 0 0 chr15 23507814 23507841 -77872680 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1497 182 28 21 chr15 23507845 23508136 -77872385 - AluJo SINE Alu -19 293 1 201 39 0 0 chr15 23508270 23508296 -77872225 + (CA)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr15 23509218 23509240 -77871281 + AT_rich Low_complexity Low_complexity 1 22 0 329 256 99 16 chr15 23510170 23510291 -77870230 - MIR3 SINE MIR -40 168 38 1848 162 12 84 chr15 23511735 23512149 -77868372 - MLT1B LTR MaLR -4 386 3 924 199 49 29 chr15 23512502 23512748 -77867773 - MLT1A1 LTR MaLR -16 349 99 3121 213 81 39 chr15 23512789 23513556 -77866965 - MER21B LTR ERV1 -53 810 12 413 179 11 42 chr15 23513564 23513659 -77866862 - MLT1A1 LTR MaLR -269 105 14 2254 109 0 13 chr15 23514517 23514819 -77865702 - AluSg SINE Alu -12 298 1 1096 151 0 12 chr15 23515839 23516011 -77864510 + FRAM SINE Alu 1 40 0 870 205 0 18 chr15 23516596 23516767 -77863754 + FRAM SINE Alu 1 40 0 289 309 0 0 chr15 23517983 23518067 -77862454 + MIR3 SINE MIR 73 156 -52 480 230 111 15 chr15 23518693 23518828 -77861693 + MER58A DNA MER1_type 1 148 0 868 263 55 15 chr15 23518932 23519395 -77861126 - MER119 DNA MER1_type -1 582 5 183 146 122 0 chr15 23519420 23519461 -77861060 - MIR SINE MIR -69 139 94 204 40 0 0 chr15 23520790 23520815 -77859706 + (TTTTTA)n Simple_repeat Simple_repeat 6 30 0 1532 88 0 16 chr15 23521609 23521803 -77858718 - AluY SINE Alu -47 264 74 209 114 29 0 chr15 23522073 23522108 -77858413 + (TG)n Simple_repeat Simple_repeat 1 36 0 925 301 68 35 chr15 23522659 23523250 -77857271 - L1MC4a LINE L1 -1915 5893 5284 332 332 93 18 chr15 23523843 23524069 -77856452 - L1MC4a LINE L1 -1604 4542 4300 280 317 106 22 chr15 23524112 23524472 -77856049 - L1MC4a LINE L1 -1949 4197 3808 22 0 0 0 chr15 23524769 23524791 -77855730 + AT_rich Low_complexity Low_complexity 1 22 0 1383 171 95 29 chr15 23525854 23526046 -77854475 - L1MB3 LINE L1 -1 6182 5959 2163 131 0 3 chr15 23526046 23526352 -77854169 - AluSx SINE Alu -7 305 1 1383 171 95 29 chr15 23526352 23526475 -77854046 - L1MB3 LINE L1 -224 5959 5846 2126 99 16 59 chr15 23526479 23526802 -77853719 - AluSx SINE Alu -3 309 1 346 333 45 31 chr15 23526816 23527036 -77853485 - L1MC4a LINE L1 -3044 3102 2874 632 125 0 29 chr15 23527036 23527140 -77853381 - HY3 scRNA scRNA 0 101 1 346 333 45 31 chr15 23527140 23527276 -77853245 - L1MC4a LINE L1 -3272 2874 2741 2339 223 149 19 chr15 23527546 23528257 -77852264 - MER21B LTR ERV1 -31 832 40 437 205 13 0 chr15 23528296 23528374 -77852147 - MER21B LTR ERV1 -773 90 12 2283 99 0 0 chr15 23530765 23531058 -77849463 - AluSx SINE Alu -13 299 7 1770 168 36 0 chr15 23531063 23531372 -77849149 + MER44D DNA MER2_type 18 607 -2 2071 156 33 0 chr15 23532184 23532550 -77847971 + MLT1B LTR MaLR 2 379 -11 208 270 101 11 chr15 23532751 23532840 -77847681 - MIR SINE MIR -72 136 40 1140 121 0 0 chr15 23533056 23533213 -77847308 - AluSp SINE Alu -17 296 140 3699 135 7 35 chr15 23533437 23534045 -77846476 + MER49 LTR ERV1 333 923 0 576 191 18 12 chr15 23535005 23535173 -77845348 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 2292 115 3 0 chr15 23536476 23536781 -77843740 - AluSq SINE Alu -5 308 3 2283 104 0 7 chr15 23536792 23537100 -77843421 - AluY SINE Alu -5 306 1 21946 196 46 5 chr15 23538397 23542565 -77837956 - ERVL LTR ERVL -788 4976 550 3187 252 53 26 chr15 23542703 23543946 -77836575 + L1M4 LINE L1 2626 3902 -2244 1866 137 181 8 chr15 23543946 23544311 -77836210 + MSTA LTR MaLR 1 428 0 10079 122 12 40 chr15 23544313 23545935 -77834586 + MSTA-int LTR MaLR 3 1580 0 409 113 238 0 chr15 23545935 23546015 -77834506 + MSTA LTR MaLR 1 99 -329 988 145 134 0 chr15 23546017 23546196 -77834325 + MSTA LTR MaLR 226 428 0 1284 253 6 10 chr15 23546196 23546508 -77834013 + L1M4 LINE L1 3898 4208 -1938 1317 253 118 36 chr15 23546511 23546629 -77833892 - MLT1D LTR MaLR 0 505 398 2214 151 28 13 chr15 23546629 23547019 -77833502 + MSTD LTR MaLR 1 396 0 1317 253 118 36 chr15 23547019 23547367 -77833154 - MLT1D LTR MaLR -107 398 1 429 320 30 13 chr15 23547371 23547671 -77832850 + L1M4 LINE L1 4211 4515 -1631 414 352 23 23 chr15 23547686 23547942 -77832579 + L1M4 LINE L1 106 361 -5594 1418 203 16 3 chr15 23548043 23548408 -77832113 + L1M4 LINE L1 3068 3437 -2597 636 266 18 9 chr15 23548528 23548757 -77831764 + L1M4 LINE L1 4173 4403 -1631 1047 322 93 23 chr15 23548772 23549464 -77831057 + L1M3a LINE L1 106 770 -5185 431 245 71 71 chr15 23549529 23549684 -77830837 + L1M3a LINE L1 635 789 -5166 2227 268 22 3 chr15 23549685 23550402 -77830119 + L1M3a LINE L1 2544 3274 -2760 1285 175 29 0 chr15 23550503 23550749 -77829772 + MLT1B LTR MaLR 127 379 -11 208 270 101 11 chr15 23550951 23551040 -77829481 - MIR SINE MIR -72 136 40 1140 121 0 0 chr15 23551256 23551413 -77829108 - AluSp SINE Alu -17 296 140 2234 117 0 0 chr15 23552145 23552445 -77828076 + AluSx SINE Alu 1 300 -12 45156 33 4 5 chr15 23553418 23559579 -77820942 + L1PA3 LINE L1 7 6155 0 1578 226 41 13 chr15 23559654 23560119 -77820402 - L1MDb LINE L1 -5264 1145 668 615 266 171 12 chr15 23560151 23560554 -77819967 - L1MDb LINE L1 -5934 475 9 2016 204 31 47 chr15 23561042 23561191 -77819330 + MER90 LTR ERV1 6 156 -458 2531 72 0 3 chr15 23561191 23561495 -77819026 + AluY SINE Alu 1 303 -8 2016 204 31 47 chr15 23561495 23561918 -77818603 + MER90 LTR ERV1 156 610 -4 2049 112 49 3 chr15 23562682 23562968 -77817553 - AluSx SINE Alu -13 299 1 235 145 72 58 chr15 23563310 23563379 -77817142 + MER53 DNA DNA 119 188 -1 1639 213 81 29 chr15 23564656 23565136 -77815385 - MLT1D LTR MaLR 0 505 1 333 229 35 83 chr15 23565800 23565914 -77814607 - MER5A DNA MER1_type -6 183 75 1790 139 40 7 chr15 23565914 23566230 -77814291 - AluY SINE Alu 0 326 2 333 229 35 83 chr15 23566230 23566258 -77814263 - MER5A DNA MER1_type -114 75 47 1751 118 129 26 chr15 23566301 23566641 -77813880 - THE1C LTR MaLR 0 375 1 1795 117 25 71 chr15 23568402 23568728 -77811793 + AluY SINE Alu 1 311 0 2109 104 3 32 chr15 23771421 23771729 -77608792 + AluSq SINE Alu 1 299 -14 257 331 40 24 chr15 23771739 23771863 -77608658 - L1M4 LINE L1 -970 5176 5051 1034 230 72 23 chr15 23772080 23772608 -77607913 + MLT1E LTR MaLR 1 593 0 258 231 68 26 chr15 23772636 23772753 -77607768 - L1M4 LINE L1 -1434 4712 4591 404 332 135 9 chr15 23773008 23773237 -77607284 - HAL1b LINE L1 -994 354 97 2431 66 0 10 chr15 23773344 23773648 -77606873 - AluY SINE Alu -10 301 1 906 300 142 51 chr15 23774078 23775217 -77605304 + L2 LINE L2 2071 3307 -6 917 242 106 124 chr15 23776511 23777354 -77603167 + L1MCb LINE L1 570 1400 -4851 2068 115 3 60 chr15 23777679 23777993 -77602528 + AluSp SINE Alu 1 296 -17 21 0 0 0 chr15 23778025 23778046 -77602475 + AT_rich Low_complexity Low_complexity 1 21 0 229 303 86 63 chr15 23778145 23778366 -77602155 - L2 LINE L2 -198 3074 2849 199 280 192 0 chr15 23778607 23778732 -77601789 - L2 LINE L2 -832 2482 2334 25 0 0 0 chr15 23779116 23779141 -77601380 + AT_rich Low_complexity Low_complexity 1 25 0 1147 286 89 42 chr15 23781082 23782082 -77598439 + L1MD2 LINE L1 806 1852 -4544 425 250 74 28 chr15 23782313 23782489 -77598032 + L1MD2 LINE L1 2448 2631 -3584 355 283 101 0 chr15 23782646 23782784 -77597737 + L1MD2 LINE L1 5014 5165 -1050 27 49 0 0 chr15 23782973 23783014 -77597507 + AT_rich Low_complexity Low_complexity 1 41 0 5305 196 95 33 chr15 23783068 23784597 -77595924 + L1MDa LINE L1 1025 2648 -3892 764 207 79 35 chr15 23784616 23784819 -77595702 + L1MD2 LINE L1 5758 5969 -459 236 271 86 14 chr15 23784957 23785027 -77595494 + L1M2a LINE L1 347 421 -6747 680 48 12 5 chr15 23785333 23785426 -77595095 - L1PA8A LINE L1 -257 5874 5792 1073 99 53 0 chr15 23785426 23785576 -77594945 + L1PA10 LINE L1 6009 6168 0 225 343 55 27 chr15 23786366 23786512 -77594009 - L2 LINE L2 0 3272 3123 35 24 0 0 chr15 23788434 23788476 -77592045 + AT_rich Low_complexity Low_complexity 1 42 0 279 220 258 68 chr15 23788702 23788834 -77591687 - MIR SINE MIR -18 244 88 22 0 0 0 chr15 23789495 23789517 -77591004 + AT_rich Low_complexity Low_complexity 1 22 0 216 233 33 17 chr15 23789778 23789838 -77590683 + MIR SINE MIR 82 142 -120 283 224 0 71 chr15 23791790 23791875 -77588646 + L1P5 LINE L1 5365 5443 -708 739 75 0 98 chr15 23791908 23792041 -77588480 + LTR9B LTR ERV1 441 560 -84 201 74 0 0 chr15 23792670 23792697 -77587824 + (CA)n Simple_repeat Simple_repeat 2 28 0 2156 93 0 84 chr15 23793441 23793774 -77586747 - AluSx SINE Alu -7 305 1 22 56 0 0 chr15 23793774 23793810 -77586711 + AT_rich Low_complexity Low_complexity 1 36 0 195 42 0 0 chr15 23796737 23796761 -77583760 + (A)n Simple_repeat Simple_repeat 1 24 0 2318 78 0 14 chr15 23797406 23797754 -77582767 - AluSq SINE Alu 0 313 1 209 105 0 26 chr15 23800608 23800646 -77579875 + (GGGAGA)n Simple_repeat Simple_repeat 6 42 0 2448 78 0 0 chr15 23802179 23802488 -77578033 - AluSg1 SINE Alu 0 309 1 304 374 107 0 chr15 23802866 23803053 -77577468 - MIR SINE MIR -24 238 32 2618 61 0 0 chr15 23803198 23803509 -77577012 - AluY SINE Alu 0 311 1 2416 47 4 0 chr15 23804434 23804713 -77575808 + L1PA5 LINE L1 5875 6154 0 872 281 35 24 chr15 23805847 23806135 -77574386 - MER93a LTR ERV1 0 402 112 1920 61 32 4 chr15 23806159 23806406 -77574115 + AluY SINE Alu 44 297 -14 275 168 8 107 chr15 23806409 23806540 -77573981 - FRAM SINE Alu -26 140 23 505 184 112 10 chr15 23806907 23807005 -77573516 - FLAM_C SINE Alu -34 109 2 2210 101 0 19 chr15 23807278 23807585 -77572936 + AluSg SINE Alu 9 309 -1 208 279 0 0 chr15 23807851 23807894 -77572627 - MER5A DNA MER1_type -84 105 63 281 182 159 23 chr15 23808109 23808197 -77572324 - MLT1J2 LTR MaLR 0 450 351 278 226 189 79 chr15 23808260 23808450 -77572071 - MLT1J2 LTR MaLR -218 232 22 205 200 147 40 chr15 23808554 23808629 -77571892 + MER5A DNA MER1_type 18 100 -89 1651 187 0 17 chr15 23810125 23810425 -77570096 + AluJo SINE Alu 3 297 -15 262 268 0 0 chr15 23811023 23811079 -77569442 + (CA)n Simple_repeat Simple_repeat 2 57 0 1176 222 58 81 chr15 23811153 23811746 -77568775 + MER67B LTR ERV1 1 350 -164 2852 126 24 9 chr15 23811836 23812257 -77568264 + MSTA LTR MaLR 2 428 0 2232 177 77 7 chr15 23812655 23813096 -77567425 + L1MB2 LINE L1 5693 6164 -7 220 320 13 0 chr15 23813335 23813410 -77567111 + L2 LINE L2 3195 3270 -2 2996 177 16 19 chr15 23815317 23815881 -77564640 - L1PA16 LINE L1 -19 6147 5586 345 288 58 14 chr15 23816009 23816148 -77564373 - MIR SINE MIR -41 221 77 295 322 40 40 chr15 23816274 23816476 -77564045 - MLT1J LTR MaLR -2 509 308 1787 181 0 0 chr15 23816567 23816905 -77563616 - AluJb SINE Alu 0 338 1 924 276 104 3 chr15 23817072 23817456 -77563065 - L1MDa LINE L1 -1450 5090 4668 440 323 32 14 chr15 23817573 23817793 -77562728 - L1M4 LINE L1 -2451 3695 3472 1699 256 64 26 chr15 23817867 23818509 -77562012 - L1MDa LINE L1 -1840 4700 4035 2358 271 63 14 chr15 23818521 23819520 -77561001 - L1MDa LINE L1 -3873 2848 1757 * 2878 233 49 19 chr15 23819519 23820263 -77560258 - L1ME1 LINE L1 -198 6037 5250 1455 193 68 17 chr15 23820263 23820558 -77559963 - AluJo SINE Alu -2 310 1 2878 233 49 19 chr15 23820558 23820845 -77559676 - L1ME1 LINE L1 -985 5250 4973 417 285 89 49 chr15 23820844 23821370 -77559151 - L1ME1 LINE L1 -4839 1557 1011 * 21 36 0 0 chr15 23821423 23821451 -77559070 + AT_rich Low_complexity Low_complexity 1 28 0 280 257 88 9 chr15 23822278 23822391 -77558130 - L1M4 LINE L1 -2366 3780 3659 611 220 113 0 chr15 23825346 23825514 -77555007 - MER20 DNA MER1_type 0 219 33 860 247 49 63 chr15 23826006 23826102 -77554419 + L1MEc LINE L1 20 116 -6280 2156 96 21 0 chr15 23826102 23826384 -77554137 + AluSp SINE Alu 4 291 -22 207 0 0 0 chr15 23826384 23826407 -77554114 + (GA)n Simple_repeat Simple_repeat 2 24 0 860 247 49 63 chr15 23826407 23826657 -77553864 + L1MEc LINE L1 114 362 -6034 659 270 44 0 chr15 23826668 23826872 -77553649 + L1MEc LINE L1 2231 2443 -3772 228 231 77 33 chr15 23826873 23826955 -77553566 - LTR38 LTR ERV1 0 556 468 2032 142 3 0 chr15 23826955 23827258 -77553263 - AluSx SINE Alu -8 304 1 447 322 0 0 chr15 23827293 23827439 -77553082 + L1MEc LINE L1 2441 2586 -3629 2337 68 65 0 chr15 23827462 23827755 -77552766 - L1PB1 LINE L1 -6 6145 5834 1443 260 37 12 chr15 23827758 23828246 -77552275 + L1M4 LINE L1 4674 5173 -973 261 289 59 40 chr15 23829041 23829091 -77551430 - L1MA10 LINE L1 0 6334 6285 2443 241 102 24 chr15 23829091 23830444 -77550077 - L1ME2 LINE L1 -38 6126 4407 1118 119 0 0 chr15 23830463 23830622 -77549899 - AluSg/x SINE Alu 0 312 154 2540 228 48 159 chr15 23830660 23831371 -77549150 - L1ME2 LINE L1 -1854 4292 3504 189 0 0 0 chr15 23831381 23831402 -77549119 + (TG)n Simple_repeat Simple_repeat 2 22 0 1619 201 7 0 chr15 23831402 23831699 -77548822 - AluJb SINE Alu -10 302 1 2540 228 48 159 chr15 23831699 23832051 -77548470 - L1ME2 LINE L1 -2642 3504 3115 326 175 0 0 chr15 23832051 23832114 -77548407 - Alu SINE Alu 0 302 240 2540 228 48 159 chr15 23832114 23833192 -77547329 - L1ME2 LINE L1 -3031 3115 2333 188 382 22 0 chr15 23834075 23834164 -77546357 - MIR SINE MIR -79 183 93 197 272 39 48 chr15 23834562 23834665 -77545856 + L2 LINE L2 2995 3096 -217 1589 189 150 14 chr15 23835234 23835668 -77544853 + LTR54B LTR ERV1 5 497 -1 1811 131 6 51 chr15 23837132 23837473 -77543048 - AluSq SINE Alu 0 313 1 5720 148 18 10 chr15 23837735 23838751 -77541770 + L1 LINE L1 3830 4853 -1293 2490 171 107 13 chr15 23840296 23840336 -77540185 - MLT2B2 LTR ERVL -4 511 476 917 173 11 148 chr15 23840336 23840613 -77539908 + MER8 DNA MER2_type 1 239 0 2490 171 107 13 chr15 23840613 23841039 -77539482 - MLT2B2 LTR ERVL -39 476 1 234 0 0 0 chr15 23842172 23842198 -77538323 + (CA)n Simple_repeat Simple_repeat 2 27 0 220 333 12 0 chr15 23843282 23843363 -77537158 - MIR3 SINE MIR -1 207 126 4405 200 50 22 chr15 23843376 23844821 -77535700 + L1MB4 LINE L1 4277 5761 -419 1914 157 47 18 chr15 23845006 23845388 -77535133 + L1MB4 LINE L1 5781 6173 -7 1911 275 72 31 chr15 23845388 23845670 -77534851 - L1M4 LINE L1 -1917 4229 3960 2173 112 0 17 chr15 23845670 23845965 -77534556 - AluSx SINE Alu -22 290 1 1911 275 72 31 chr15 23845965 23846709 -77533812 - L1M4 LINE L1 -2186 3960 3158 1238 276 165 12 chr15 23846725 23847363 -77533158 - L1M4 LINE L1 -3116 3030 2296 661 309 133 46 chr15 23847396 23847892 -77532629 - L2 LINE L2 -2617 697 159 404 325 24 8 chr15 23848134 23848257 -77532264 + L2 LINE L2 3137 3261 -11 409 207 6 11 chr15 23849666 23849845 -77530676 + (CA)n Simple_repeat Simple_repeat 2 179 0 346 203 11 22 chr15 23849893 23850075 -77530446 + (CA)n Simple_repeat Simple_repeat 1 180 0 882 291 96 34 chr15 23851353 23851800 -77528721 - LTR33 LTR ERVL 0 521 47 412 284 153 6 chr15 23851844 23852020 -77528501 - MLT1J2 LTR MaLR -246 204 3 1912 255 75 54 chr15 23853641 23854298 -77526223 - MER21B LTR ERV1 -92 771 96 2375 88 3 10 chr15 23854298 23854606 -77525915 + AluSp SINE Alu 1 306 -7 1912 255 75 54 chr15 23854606 23854686 -77525835 - MER21B LTR ERV1 -767 96 19 762 191 0 31 chr15 23856392 23856554 -77523967 + L1MC/D LINE L1 5456 5612 -630 394 252 25 23 chr15 23856554 23856731 -77523790 - HERVL74 LTR ERVL -2407 1230 982 1875 199 14 6 chr15 23857360 23857716 -77522805 - MLT1A1 LTR MaLR 0 365 7 2294 194 29 12 chr15 23858003 23858493 -77522028 - LTR53 LTR ERVL -2 517 20 2543 174 44 25 chr15 23859705 23860228 -77520293 + L1MA6 LINE L1 5767 6299 -1 637 233 8 0 chr15 23860247 23860376 -77520145 + MLT1C LTR MaLR 292 421 -46 22 0 0 0 chr15 23860376 23860398 -77520123 + AT_rich Low_complexity Low_complexity 1 22 0 316 273 47 35 chr15 23861997 23862169 -77518352 + L1M4 LINE L1 4536 4709 -1437 378 0 0 0 chr15 23862795 23862837 -77517684 + (TG)n Simple_repeat Simple_repeat 1 42 0 2773 160 36 5 chr15 23862925 23863368 -77517153 + MSTB2 LTR MaLR 1 457 0 1787 216 67 17 chr15 23863717 23864193 -77516328 + L1MDa LINE L1 1041 1540 -5000 1661 234 131 30 chr15 23864191 23864537 -77515984 - L1MDa LINE L1 -5899 641 331 * 288 0 0 0 chr15 23864537 23864569 -77515952 + (TG)n Simple_repeat Simple_repeat 2 33 0 1661 234 131 30 chr15 23864569 23864786 -77515735 - L1MDa LINE L1 -6209 331 21 776 257 48 0 chr15 23865611 23865817 -77514704 + MER20 DNA MER1_type 3 218 -1 3699 80 4 0 chr15 23865869 23866319 -77514202 - MLT2A2 LTR ERVL -1 452 1 2400 77 0 19 chr15 23866907 23867231 -77513290 - AluYb8 SINE Alu 0 318 1 30 0 0 0 chr15 23867358 23867388 -77513133 + AT_rich Low_complexity Low_complexity 1 30 0 1520 129 47 0 chr15 23867395 23867627 -77512894 + L1MA5A LINE L1 6044 6286 -11 788 234 0 25 chr15 23867944 23868138 -77512383 + FRAM SINE Alu 1 187 0 2531 147 9 104 chr15 23868603 23869133 -77511388 - LTR12 LTR ERV1 -234 480 1 560 261 30 0 chr15 23869199 23869333 -77511188 - MER21B LTR ERV1 -422 441 304 219 329 29 0 chr15 23869794 23869864 -77510657 - MIR3 SINE MIR -52 156 85 2576 57 0 13 chr15 23870122 23870437 -77510084 + AluY SINE Alu 1 311 0 23 33 0 0 chr15 23871111 23871141 -77509380 + AT_rich Low_complexity Low_complexity 1 30 0 228 238 0 0 chr15 23871396 23871459 -77509062 + L1MC4 LINE L1 7980 8042 0 478 305 97 55 chr15 23871459 23871572 -77508949 + L1M4 LINE L1 2260 2367 -3779 288 53 0 0 chr15 23871572 23871610 -77508911 + (CA)n Simple_repeat Simple_repeat 1 38 0 478 305 97 55 chr15 23871610 23871928 -77508593 + L1M4 LINE L1 2367 2741 -3405 934 245 84 25 chr15 23871928 23872250 -77508271 - MER58B DNA MER1_type 0 341 1 478 305 97 55 chr15 23872250 23872489 -77508032 + L1M4 LINE L1 2741 2969 -3177 34 0 0 0 chr15 23872507 23872541 -77507980 + AT_rich Low_complexity Low_complexity 1 34 0 3714 254 76 37 chr15 23872585 23873475 -77507046 + L1MC3 LINE L1 2335 3188 -3238 810 124 84 22 chr15 23873475 23873653 -77506868 + L1MA5A LINE L1 6100 6288 -9 2190 124 0 0 chr15 23873653 23873943 -77506578 - AluSp SINE Alu -23 290 1 3714 254 76 37 chr15 23873943 23874981 -77505540 + L1MC3 LINE L1 3187 4342 -2084 8300 229 56 27 chr15 23875006 23875934 -77504587 + L1MC3 LINE L1 4666 5565 -2500 2007 131 17 14 chr15 23875934 23876231 -77504290 + AluSx SINE Alu 1 298 -14 8300 229 56 27 chr15 23876231 23878232 -77502289 + L1MC3 LINE L1 5565 7722 -343 2425 62 3 0 chr15 23878232 23878522 -77501999 + AluY SINE Alu 5 295 -16 8300 229 56 27 chr15 23878522 23878870 -77501651 + L1MC3 LINE L1 7722 8058 -7 22 35 0 0 chr15 23879134 23879163 -77501358 + AT_rich Low_complexity Low_complexity 1 29 0 249 337 32 11 chr15 23880391 23880486 -77500035 - L2 LINE L2 -20 3293 3197 1260 152 13 0 chr15 23881029 23881260 -77499261 + L1MA4A LINE L1 6065 6298 -5 325 246 155 16 chr15 23884025 23884212 -77496309 + MER58C DNA MER1_type 1 213 -2 421 288 144 55 chr15 23884217 23884680 -77495841 + HAL1b LINE L1 65 1644 -824 343 221 54 69 chr15 23884986 23885190 -77495331 + HAL1b LINE L1 680 880 -468 343 340 44 6 chr15 23885321 23885480 -77495041 + MER20B DNA MER1_type 7 171 -612 349 347 52 38 chr15 23885872 23886350 -77494171 + L1M4 LINE L1 2488 2972 -3174 345 291 52 70 chr15 23887026 23887256 -77493265 + L1MEc LINE L1 661 886 -5510 351 265 61 39 chr15 23887263 23887493 -77493028 + L1MEc LINE L1 947 1181 -5037 368 128 21 32 chr15 23887568 23887662 -77492859 + GA-rich Low_complexity Low_complexity 3 95 0 1732 255 47 72 chr15 23887663 23889375 -77491146 + L1MEc LINE L1 1437 3051 -3164 1035 252 91 23 chr15 23889470 23889774 -77490747 + MLT2F LTR ERVL 185 467 -196 189 0 0 0 chr15 23889774 23889795 -77490726 + (CCTG)n Simple_repeat Simple_repeat 3 23 0 1035 252 91 23 chr15 23889795 23889871 -77490650 + MLT2F LTR ERVL 467 536 -127 414 0 0 0 chr15 23889871 23889917 -77490604 + (CA)n Simple_repeat Simple_repeat 1 46 0 300 27 0 0 chr15 23889916 23889953 -77490568 + (GA)n Simple_repeat Simple_repeat 2 38 0 * 1035 252 91 23 chr15 23889917 23890011 -77490510 + MLT2F LTR ERVL 536 654 -9 232 192 48 67 chr15 23890095 23890199 -77490322 - MLT1I LTR MaLR -59 350 249 983 106 0 0 chr15 23890229 23890361 -77490160 + AluY SINE Alu 1 132 -179 2315 74 0 0 chr15 23890366 23890680 -77489841 + AluY SINE Alu 1 314 0 182 264 57 0 chr15 23890813 23890866 -77489655 + L2 LINE L2 3256 3311 -2 294 333 72 31 chr15 23891499 23891817 -77488704 + L2 LINE L2 2398 2728 -586 722 319 83 27 chr15 23891853 23892260 -77488261 + L2 LINE L2 2864 3293 -20 713 251 79 20 chr15 23892392 23892735 -77487786 - Charlie2a DNA MER1_type -1589 1273 911 1978 146 7 7 chr15 23892900 23893202 -77487319 - AluSx SINE Alu -10 302 1 1217 146 59 14 chr15 23893723 23893943 -77486578 - MER30 DNA MER1_type 0 230 1 697 286 53 11 chr15 23894583 23894865 -77485656 - L1P3 LINE L1 -319 5853 5561 26 30 0 0 chr15 23895233 23895266 -77485255 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr15 23895285 23895314 -77485207 + AT_rich Low_complexity Low_complexity 1 29 0 2097 138 0 0 chr15 23895510 23895806 -77484715 + AluSq SINE Alu 1 296 -17 231 236 14 28 chr15 23896527 23896599 -77483922 + GA-rich Low_complexity Low_complexity 4 74 0 24 32 0 0 chr15 23896694 23896725 -77483796 + AT_rich Low_complexity Low_complexity 1 31 0 236 294 0 0 chr15 23897651 23897743 -77482778 + Charlie2a DNA MER1_type 1401 1492 -1370 2266 107 7 0 chr15 23897843 23898143 -77482378 + AluSx SINE Alu 1 302 -10 348 225 117 0 chr15 23898211 23898322 -77482199 + L1MC4 LINE L1 7919 8042 0 1749 239 35 26 chr15 23898578 23899132 -77481389 + L1P3 LINE L1 2 545 -5330 22574 171 29 17 chr15 23899158 23904310 -77476211 + L1P3 LINE L1 430 5718 -743 25 31 0 0 chr15 23904792 23904824 -77475697 + AT_rich Low_complexity Low_complexity 1 32 0 2481 88 0 0 chr15 23907848 23908156 -77472365 + AluSc SINE Alu 1 308 -1 1928 138 31 7 chr15 23908795 23909084 -77471437 - AluSx SINE Alu -16 296 1 1155 201 17 8 chr15 23909660 23909899 -77470622 + MER4E LTR ERV1 539 779 0 1112 211 164 40 chr15 23910841 23911429 -77469092 + LTR48 LTR ERV1 1 644 0 598 221 7 107 chr15 23912691 23913131 -77467390 - L1M4 LINE L1 -2826 3320 2925 264 113 0 48 chr15 23914442 23914504 -77466017 + (TATTG)n Simple_repeat Simple_repeat 1 59 0 885 224 40 40 chr15 23914659 23914962 -77465559 - MLT1B LTR MaLR -87 303 1 335 196 145 58 chr15 23915012 23915150 -77465371 + L1ME2 LINE L1 5526 5675 -491 837 238 42 26 chr15 23915154 23915419 -77465102 - MSTC LTR MaLR -3 425 157 245 123 15 77 chr15 23915564 23915629 -77464892 - MSTC LTR MaLR -362 66 6 341 219 78 23 chr15 23915632 23915760 -77464761 + L1ME2 LINE L1 5668 5802 -364 200 89 67 0 chr15 23915851 23915896 -77464625 + (TA)n Simple_repeat Simple_repeat 2 49 0 201 147 0 0 chr15 23915941 23915975 -77464546 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 198 192 0 0 chr15 23915996 23916048 -77464473 + (TA)n Simple_repeat Simple_repeat 1 52 0 241 215 177 0 chr15 23916048 23916127 -77464394 + L1ME2 LINE L1 5844 5936 -228 366 307 15 0 chr15 23916162 23916299 -77464222 + L1MA10 LINE L1 6176 6314 -20 3816 143 29 47 chr15 23917551 23917834 -77462687 + L1MB3 LINE L1 5428 5715 -468 3515 132 23 30 chr15 23917834 23918441 -77462080 - LTR26 LTR ERV1 0 603 1 3816 143 29 47 chr15 23918441 23918925 -77461596 + L1MB3 LINE L1 5715 6181 -2 22 80 0 0 chr15 23918933 23918983 -77461538 + AT_rich Low_complexity Low_complexity 1 50 0 1288 159 40 36 chr15 23919178 23919401 -77461120 + L1MA5 LINE L1 6022 6248 -52 1949 107 3 58 chr15 23919401 23919710 -77460811 + AluSx SINE Alu 1 292 -20 1288 159 40 36 chr15 23919710 23919762 -77460759 + L1MA5 LINE L1 6248 6298 -2 596 285 16 36 chr15 23920609 23920802 -77459719 + MIR SINE MIR 44 232 -30 517 297 28 31 chr15 23921267 23921553 -77458968 + L1M4 LINE L1 4422 4706 -1440 5722 168 19 4 chr15 23921554 23922611 -77457910 - L1 LINE L1 -1428 4718 3646 3725 179 37 13 chr15 23922612 23923370 -77457151 + L1MA7 LINE L1 5516 6291 0 4134 152 197 20 chr15 23923453 23924743 -77455778 - pTR5 LTR ERV1 -1 2437 741 303 268 117 57 chr15 23924747 23925012 -77455509 + L1M4 LINE L1 4793 5073 -1073 192 152 0 0 chr15 23925885 23925918 -77454603 + A-rich Low_complexity Low_complexity 3 35 0 325 267 35 12 chr15 23926711 23926797 -77453724 + L1MC4 LINE L1 6614 6701 -1341 322 292 45 11 chr15 23926772 23926861 -77453660 - L1MC4 LINE L1 -1340 6702 6611 * 308 255 128 11 chr15 23927100 23927194 -77453327 + L1MC4 LINE L1 6601 6705 -1337 305 301 94 8 chr15 23927149 23927267 -77453254 - L1MC4 LINE L1 -1339 6703 6589 * 218 211 0 0 chr15 23927267 23927305 -77453216 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 306 0 0 0 chr15 23928551 23928585 -77451936 + (CA)n Simple_repeat Simple_repeat 2 35 0 1735 142 14 0 chr15 23929232 23929520 -77451001 + L1MA8 LINE L1 4488 4779 -1367 894 192 12 6 chr15 23929520 23929692 -77450829 + AluJb SINE Alu 117 289 -23 333 0 0 0 chr15 23929694 23929731 -77450790 + (CA)n Simple_repeat Simple_repeat 2 38 0 3077 133 19 35 chr15 23929731 23930458 -77450063 + L1MA8 LINE L1 4790 5498 -793 3772 131 38 0 chr15 23930458 23931017 -77449504 - LTR19B LTR ERV1 0 580 1 3077 133 19 35 chr15 23931017 23931241 -77449280 + L1MA8 LINE L1 5498 5724 -567 3404 97 19 13 chr15 23931241 23931732 -77448789 - LTR15 LTR ERV1 0 595 1 1869 152 108 8 chr15 23931732 23932101 -77448420 + L1MA8 LINE L1 5721 6126 -165 379 127 89 0 chr15 23932104 23932183 -77448338 + L1 LINE L1 5200 5285 -861 1009 66 22 0 chr15 23932184 23932321 -77448200 + L1MA8 LINE L1 6127 6266 -25 1944 162 29 21 chr15 23933805 23934145 -77446376 + MLT2D LTR ERVL 31 373 -41 198 236 0 0 chr15 23934165 23934220 -77446301 + (TA)n Simple_repeat Simple_repeat 1 55 0 404 163 29 0 chr15 23934237 23934317 -77446204 - MLT2D LTR ERVL -40 480 301 213 261 0 0 chr15 23934317 23934363 -77446158 + (TA)n Simple_repeat Simple_repeat 1 46 0 27 29 0 0 chr15 23934599 23934633 -77445888 + AT_rich Low_complexity Low_complexity 1 34 0 480 275 8 23 chr15 23935790 23935921 -77444600 + L2 LINE L2 3144 3272 0 312 202 34 56 chr15 23935936 23936025 -77444496 + L1MCa LINE L1 2004 2090 -4336 3646 214 66 7 chr15 23937622 23938453 -77442068 + L1MC3 LINE L1 6395 7274 -511 375 287 65 57 chr15 23939105 23939335 -77441186 - MIR SINE MIR 0 262 31 1512 223 56 11 chr15 23939745 23940184 -77440337 - MER89 LTR ERV1 0 559 1 525 267 0 0 chr15 23940354 23940614 -77439907 + (CA)n Simple_repeat Simple_repeat 1 260 0 1743 174 0 7 chr15 23941408 23941706 -77438815 - AluJb SINE Alu -16 296 1 479 313 82 5 chr15 23941731 23941939 -77438582 + MER58A DNA MER1_type 1 224 0 1600 180 35 38 chr15 23942222 23942588 -77437933 + MLT1A1 LTR MaLR 1 365 0 1313 203 14 10 chr15 23943718 23944013 -77436508 + L1MA5 LINE L1 6005 6300 0 1009 275 66 22 chr15 23946476 23946883 -77433638 - LTR37A LTR ERV1 -1 425 1 524 234 85 21 chr15 23947274 23947415 -77433106 - MIR SINE MIR -6 256 107 327 234 0 0 chr15 23948576 23948640 -77431881 - L1MC4 LINE L1 -1339 6703 6640 1121 169 0 5 chr15 23948680 23948869 -77431652 - AluJo SINE Alu -39 273 86 212 300 80 10 chr15 23949319 23949419 -77431102 - MIR SINE MIR 0 262 156 955 196 174 42 chr15 23949420 23949685 -77430836 + MER92B LTR ERV1 1 300 -336 788 243 26 13 chr15 23949723 23949949 -77430572 + MER92B LTR ERV1 393 621 -15 302 212 40 22 chr15 23949960 23950053 -77430468 - MIR SINE MIR -58 150 63 1072 213 39 67 chr15 23950400 23950540 -77429981 + MLT1A1 LTR MaLR 1 143 -222 780 162 0 28 chr15 23950540 23950682 -77429839 - L1PA10 LINE L1 -6 6162 6025 1072 213 39 67 chr15 23950682 23950898 -77429623 + MLT1A1 LTR MaLR 143 347 -18 2701 235 31 10 chr15 23950952 23951556 -77428965 - MER82 DNA MER2_type -11 642 26 3173 128 41 41 chr15 23952449 23953057 -77427464 + MER4B LTR ERV1 1 779 0 1300 203 117 16 chr15 23953987 23954572 -77425949 + LTR48 LTR ERV1 1 644 0 549 200 0 10 chr15 23955552 23955652 -77424869 - MLT1A1 LTR MaLR 0 365 267 247 374 71 13 chr15 23955671 23955826 -77424695 + L2 LINE L2 3109 3272 0 450 284 14 27 chr15 23956359 23956507 -77424014 - MIR SINE MIR -54 208 63 303 293 72 83 chr15 23956705 23957067 -77423454 + MLT1I LTR MaLR 50 407 -2 355 296 71 33 chr15 23959863 23960103 -77420418 - MER34B LTR ERV1 0 565 317 1362 214 60 3 chr15 23961061 23961360 -77419161 + MER58B DNA MER1_type 26 341 0 2171 140 79 25 chr15 23961385 23961774 -77418747 + MSTC LTR MaLR 1 410 -18 1293 132 10 5 chr15 23961774 23961971 -77418550 + MSTA LTR MaLR 1 198 -230 1170 96 0 24 chr15 23961972 23962138 -77418383 + AluSp SINE Alu 138 299 -14 1576 130 13 4 chr15 23962140 23962378 -77418143 + MSTA LTR MaLR 189 428 0 3490 106 32 4 chr15 23962472 23962971 -77417550 + LTR10D LTR ERV1 1 513 0 308 152 70 13 chr15 23963847 23964005 -77416516 + (CA)n Simple_repeat Simple_repeat 1 167 0 424 213 40 29 chr15 23964046 23964220 -77416301 + (CA)n Simple_repeat Simple_repeat 1 176 0 217 145 32 0 chr15 23965120 23965182 -77415339 + (TA)n Simple_repeat Simple_repeat 2 65 0 464 304 34 14 chr15 23965228 23965376 -77415145 + L2 LINE L2 3162 3312 -1 2023 174 61 30 chr15 23966668 23967075 -77413446 + MSTB LTR MaLR 7 426 0 196 279 124 90 chr15 23967749 23967950 -77412571 + L3 LINE CR1 1312 1519 -58 5939 150 28 25 chr15 23968119 23969462 -77411059 - L1MA4A LINE L1 0 7005 5649 3837 193 60 9 chr15 23969462 23970334 -77410187 - L1MA4A LINE L1 -5933 916 1 450 265 74 37 chr15 23970477 23970692 -77409829 - L1ME LINE L1 -367 5754 5532 188 268 0 0 chr15 23971129 23971170 -77409351 - MIR SINE MIR -6 256 216 181 264 97 0 chr15 23971985 23972057 -77408464 + MIR SINE MIR 107 185 -77 215 0 0 62 chr15 23972111 23972143 -77408378 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 2028 112 97 9 chr15 23972166 23972505 -77408016 + THE1C LTR MaLR 4 372 -3 21 0 0 0 chr15 23973323 23973344 -77407177 + AT_rich Low_complexity Low_complexity 1 21 0 659 191 64 0 chr15 23973780 23973921 -77406600 + L1MB3 LINE L1 6027 6176 -7 663 280 125 11 chr15 23974455 23974734 -77405787 - L1ME3A LINE L1 -199 5971 5661 243 0 0 0 chr15 23974887 23974914 -77405607 + (A)n Simple_repeat Simple_repeat 1 27 0 2215 199 64 42 chr15 23976145 23977322 -77403199 - L1M4c LINE L1 -4281 2365 920 450 68 122 40 chr15 23977322 23977396 -77403125 + THE1C LTR MaLR 1 80 -295 673 94 10 10 chr15 23977402 23977498 -77403023 + MSTA LTR MaLR 333 428 0 1628 290 55 70 chr15 23977498 23978435 -77402086 - L1M4c LINE L1 -5618 924 2 810 193 37 32 chr15 23978469 23978656 -77401865 + MLT1E2 LTR MaLR 1 188 -438 * 992 287 94 3 chr15 23978636 23978922 -77401599 + MLT1E2 LTR MaLR 315 626 0 2314 243 26 3 chr15 23978941 23979513 -77401008 + MLT1E2-int LTR MaLR 6 590 -781 1302 230 40 162 chr15 23979719 23980489 -77400032 + MLT1E2-int LTR MaLR 696 1371 0 1320 231 137 70 chr15 23980489 23981074 -77399447 + MLT1E2 LTR MaLR 1 624 -2 300 340 26 26 chr15 23981289 23981445 -77399076 - L2 LINE L2 -1 3271 3116 299 231 74 65 chr15 23981624 23981694 -77398827 - MER5A DNA MER1_type -1 188 115 3751 121 24 121 chr15 23981694 23982454 -77398067 + LTR12 LTR ERV1 3 688 0 299 231 74 65 chr15 23982454 23982491 -77398030 - MER5A DNA MER1_type -74 115 80 366 245 57 0 chr15 23982783 23982889 -77397632 + MLT1J LTR MaLR 58 169 -342 991 273 50 14 chr15 23983564 23983927 -77396594 - L1MD2 LINE L1 -10 6349 5974 * 2540 251 67 47 chr15 23983905 23985037 -77395484 - L1M4 LINE L1 -1610 4536 3382 3990 245 50 41 chr15 23985225 23986694 -77393827 - L1M4 LINE L1 -1744 4402 2920 264 113 0 48 chr15 23987993 23988055 -77392466 + (TATTG)n Simple_repeat Simple_repeat 1 59 0 1016 218 46 46 chr15 23988209 23988512 -77392009 - MLT1B LTR MaLR -87 303 1 390 158 162 77 chr15 23988539 23988698 -77391823 + L1ME2 LINE L1 5508 5675 -491 971 235 41 26 chr15 23988698 23988966 -77391555 - MSTC LTR MaLR 0 428 157 376 182 0 0 chr15 23989104 23989170 -77391351 - MSTC LTR MaLR -360 68 3 373 224 96 8 chr15 23989172 23989297 -77391224 + L1ME2 LINE L1 5671 5806 -360 31 44 0 0 chr15 23989381 23989426 -77391095 + AT_rich Low_complexity Low_complexity 1 45 0 201 147 0 0 chr15 23989471 23989505 -77391016 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 198 192 0 0 chr15 23989526 23989578 -77390943 + (TA)n Simple_repeat Simple_repeat 1 52 0 273 215 177 0 chr15 23989578 23989657 -77390864 + L1ME2 LINE L1 5844 5936 -228 * 540 265 163 47 chr15 23989654 23989847 -77390674 + L1MA10 LINE L1 5956 6334 0 806 204 7 0 chr15 23990237 23990379 -77390142 + AluJb SINE Alu 136 278 -34 21 0 0 0 chr15 23990770 23990791 -77389730 + AT_rich Low_complexity Low_complexity 1 21 0 755 137 17 23 chr15 23991640 23991815 -77388706 + CT-rich Low_complexity Low_complexity 4 177 0 326 316 73 9 chr15 23991819 23991847 -77388674 + L2 LINE L2 3079 3104 -209 2103 132 6 3 chr15 23991847 23992158 -77388363 - AluSx SINE Alu 0 312 1 326 316 73 9 chr15 23992158 23992347 -77388174 + L2 LINE L2 3104 3310 -3 1437 177 20 96 chr15 23993177 23993584 -77386937 - MLT1B LTR MaLR -7 383 8 2194 118 30 0 chr15 23994310 23994614 -77385907 + AluSq SINE Alu 1 313 0 2132 112 0 3 chr15 23995030 23995359 -77385162 + AluSx SINE Alu 1 328 0 259 324 43 7 chr15 23995513 23995652 -77384869 + MLT1J LTR MaLR 54 197 -314 409 82 0 0 chr15 23995713 23995794 -77384727 + L1PA5 LINE L1 6068 6131 0 249 310 26 9 chr15 23995801 23995914 -77384607 + MLT1J LTR MaLR 389 503 -8 578 189 9 0 chr15 23996873 23996979 -77383542 - MLT1D LTR MaLR -376 129 23 1823 263 56 68 chr15 23997001 23997681 -77382840 - MLT1D-int LTR MaLR -8 1363 692 1686 227 107 71 chr15 23997844 23998464 -77382057 - MLT1D-int LTR MaLR -727 644 3 228 200 0 0 chr15 23998467 23998507 -77382014 - MLT1D LTR MaLR 0 626 587 279 243 27 10 chr15 23998518 23998614 -77381907 - MLT1D LTR MaLR -111 394 317 238 200 0 0 chr15 23998742 23998787 -77381734 - MLT1D LTR MaLR -459 46 2 1496 201 64 38 chr15 23998929 23999348 -77381173 - MER21B LTR ERV1 -58 805 376 1672 242 55 21 chr15 23999351 23999748 -77380773 - MER21B LTR ERV1 -427 436 23 414 0 0 0 chr15 23999748 23999794 -77380727 + (TA)n Simple_repeat Simple_repeat 2 47 0 1672 242 55 21 chr15 23999794 23999818 -77380703 - MER21B LTR ERV1 -840 23 1 301 315 16 8 chr15 23999937 24000064 -77380457 + MLT1L LTR MaLR 483 610 -5 272 314 58 0 chr15 24002644 24002730 -77377791 + L2 LINE L2 3213 3303 -10 26 0 0 0 chr15 24002730 24002756 -77377765 + AT_rich Low_complexity Low_complexity 1 26 0 34 55 0 0 chr15 24002836 24002891 -77377630 + AT_rich Low_complexity Low_complexity 1 55 0 2005 135 28 0 chr15 24002895 24003184 -77377337 + AluSg SINE Alu 1 297 -13 2309 238 26 42 chr15 24003210 24003824 -77376697 + L1M3e LINE L1 467 1070 -6419 3331 230 24 25 chr15 24003825 24004743 -77375778 + L1M3e LINE L1 2019 2864 -4701 205 0 114 0 chr15 24004743 24004778 -77375743 + A-rich Low_complexity Low_complexity 2 40 0 3331 230 24 25 chr15 24004778 24004981 -77375540 + L1M3e LINE L1 2864 3066 -4499 623 235 31 0 chr15 24004980 24005142 -77375379 + L1MA8 LINE L1 6125 6291 0 * 25 31 0 0 chr15 24005170 24005202 -77375319 + AT_rich Low_complexity Low_complexity 1 32 0 243 225 75 38 chr15 24005249 24005329 -77375192 + L1ME2 LINE L1 4 86 -5984 1484 276 161 29 chr15 24005773 24006823 -77373698 + L1ME2 LINE L1 3950 5138 -942 1348 285 81 37 chr15 24006830 24007469 -77373052 + L1ME2 LINE L1 5193 5865 -233 2289 47 54 0 chr15 24007469 24007747 -77372774 + AluY SINE Alu 1 293 -18 1348 285 81 37 chr15 24007747 24007788 -77372733 + L1ME2 LINE L1 5865 5903 -195 2487 90 0 0 chr15 24008448 24008760 -77371761 - AluSx SINE Alu 0 312 1 180 357 108 8 chr15 24009549 24009678 -77370843 - L2 LINE L2 -4 3268 3127 308 263 26 53 chr15 24011717 24011813 -77368708 + MER92C LTR ERV1 230 322 -232 4883 145 56 18 chr15 24011813 24012117 -77368404 + MER4D LTR ERV1 1 292 -611 3433 133 27 15 chr15 24012117 24012664 -77367857 - MER41C LTR ERV1 0 554 1 4883 145 56 18 chr15 24012664 24013229 -77367292 + MER4D LTR ERV1 292 903 0 2137 115 0 17 chr15 24013247 24013568 -77366953 + AluSg SINE Alu 1 316 0 622 269 42 23 chr15 24013577 24013793 -77366728 + MER92C LTR ERV1 308 527 -27 3553 225 130 27 chr15 24014710 24016372 -77364149 + L1MDb LINE L1 7 1865 -4541 1504 292 36 8 chr15 24016384 24016969 -77363552 + L1M4 LINE L1 4128 4728 -1418 320 217 0 0 chr15 24017698 24017767 -77362754 - LTR30 LTR ERV1 -102 620 552 1809 102 61 41 chr15 24017768 24018199 -77362322 - LTR12 LTR ERV1 -406 2032 1 2472 104 52 0 chr15 24018199 24018546 -77361975 - HERV9 LTR ERV1 0 8399 8035 849 198 119 18 chr15 24018574 24018801 -77361720 - LTR32 LTR ERVL -51 420 171 589 179 71 50 chr15 24019110 24019250 -77361271 - LTR32 LTR ERVL -286 185 43 569 186 39 0 chr15 24019287 24019443 -77361078 + Charlie5 DNA MER1_type 2389 2550 -62 3985 126 5 44 chr15 24019510 24019788 -77360733 + MER41B LTR ERV1 1 288 -347 4384 100 28 15 chr15 24019788 24020440 -77360081 - PABL_A LTR ERV1 0 660 1 3985 126 5 44 chr15 24020440 24020821 -77359700 + MER41B LTR ERV1 288 634 -1 563 265 45 54 chr15 24020852 24021075 -77359446 - MER58A DNA MER1_type -3 221 1 271 248 8 8 chr15 24021351 24021468 -77359053 + CT-rich Low_complexity Low_complexity 1 117 0 205 155 35 0 chr15 24021501 24021559 -77358962 + CT-rich Low_complexity Low_complexity 1 60 0 934 221 13 32 chr15 24022003 24022364 -77358157 - L1M LINE L1 -743 5403 5076 201 342 75 20 chr15 24022485 24022780 -77357741 - L2 LINE L2 -2051 1263 865 2365 70 0 13 chr15 24022979 24023293 -77357228 + AluY SINE Alu 1 310 -1 218 173 58 58 chr15 24023830 24023882 -77356639 - MIR SINE MIR -134 74 23 189 121 69 138 chr15 24025132 24025190 -77355331 - L2 LINE L2 -947 2367 2314 311 288 102 34 chr15 24026851 24027028 -77353493 - MIR SINE MIR -13 249 61 517 273 87 6 chr15 24027111 24027272 -77353249 + MIR SINE MIR 48 221 -41 1040 187 21 0 chr15 24027405 24027604 -77352917 + L1PB4 LINE L1 5743 5949 -207 490 222 88 107 chr15 24027606 24027947 -77352574 - LTR58 LTR ERV1 0 670 350 316 224 90 0 chr15 24028145 24028212 -77352309 - LTR35 LTR ERV1 -543 75 3 1188 141 50 0 chr15 24028212 24028411 -77352110 + L1PB4 LINE L1 5948 6156 0 1974 234 64 84 chr15 24028413 24028473 -77352048 - L1MDa LINE L1 -1241 5299 5239 606 245 99 0 chr15 24028473 24028624 -77351897 + FAM SINE Alu 2 167 -8 1974 234 64 84 chr15 24028624 24029475 -77351046 - L1MDa LINE L1 -1301 5239 4407 2775 233 50 92 chr15 24029480 24030391 -77350130 - L1MDa LINE L1 -2450 4090 3262 185 32 0 65 chr15 24030391 24030422 -77350099 + (CAAAT)n Simple_repeat Simple_repeat 1 29 0 2775 233 50 92 chr15 24030422 24030994 -77349527 - L1MDa LINE L1 -3278 3262 2668 4010 188 92 11 chr15 24031007 24032004 -77348517 - L1MDa LINE L1 -4384 2156 1079 1478 236 118 25 chr15 24032003 24032477 -77348044 - L1MDa LINE L1 -6016 524 7 * 280 289 12 35 chr15 24032830 24033003 -77347518 + (CACCC)n Simple_repeat Simple_repeat 2 170 0 1684 147 3 18 chr15 24033599 24033885 -77346636 + AluSx SINE Alu 1 282 -30 582 60 0 0 chr15 24033886 24033969 -77346552 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 442 279 75 30 chr15 24034401 24034602 -77345919 + L1MC3 LINE L1 5431 5640 -481 349 258 66 101 chr15 24034613 24034811 -77345710 + L1MC3 LINE L1 5718 5908 -1900 2220 94 3 7 chr15 24034853 24035162 -77345359 + AluSp SINE Alu 1 308 -5 3752 133 38 0 chr15 24036213 24036792 -77343729 + LTR26 LTR ERV1 3 603 0 2098 110 3 0 chr15 24037115 24037405 -77343116 + AluSx SINE Alu 6 296 -16 903 237 34 17 chr15 24037695 24037931 -77342590 + LTR40b LTR ERVL 1 240 -222 475 205 188 0 chr15 24037957 24038069 -77342452 + LTR40b LTR ERVL 312 444 -18 314 229 43 0 chr15 24038111 24038181 -77342340 + MIR SINE MIR 120 192 -70 5250 211 58 27 chr15 24038435 24039701 -77340820 + L1MC3 LINE L1 6312 7616 -169 353 359 6 6 chr15 24040363 24040519 -77340002 + (CA)n Simple_repeat Simple_repeat 2 157 0 201 175 0 0 chr15 24040531 24040571 -77339950 + (CA)n Simple_repeat Simple_repeat 1 40 0 203 276 10 0 chr15 24040665 24040763 -77339758 + (CATA)n Simple_repeat Simple_repeat 4 102 0 300 262 12 12 chr15 24040776 24040860 -77339661 + (CA)n Simple_repeat Simple_repeat 2 85 0 463 255 9 9 chr15 24040942 24041048 -77339473 - MER58A DNA MER1_type 0 142 37 1065 273 105 19 chr15 24041071 24042307 -77338214 - L1ME3A LINE L1 -18 6152 4696 201 175 0 0 chr15 24042323 24042363 -77338158 + GA-rich Low_complexity Low_complexity 2 41 0 2170 123 0 0 chr15 24043089 24043397 -77337124 + AluSq SINE Alu 4 311 -2 200 281 99 47 chr15 24045847 24046039 -77334482 + L2 LINE L2 2682 2883 -431 285 309 12 0 chr15 24047135 24047216 -77333305 + L3 LINE CR1 1346 1427 -150 6535 164 19 11 chr15 24048021 24050237 -77330284 + L1PB2 LINE L1 3920 6151 0 285 265 0 14 chr15 24050454 24050553 -77329968 + MIR SINE MIR 77 170 -38 237 221 0 0 chr15 24052094 24052162 -77328359 + (CA)n Simple_repeat Simple_repeat 1 68 0 1237 187 14 28 chr15 24052620 24052909 -77327612 - L1MA4 LINE L1 -7 6293 6009 23 88 0 0 chr15 24053360 24053394 -77327127 + AT_rich Low_complexity Low_complexity 1 34 0 32 43 0 0 chr15 24053441 24053487 -77327034 + AT_rich Low_complexity Low_complexity 1 46 0 322 268 192 56 chr15 24055058 24055190 -77325331 - MIR SINE MIR -30 232 63 216 0 0 0 chr15 24055190 24055214 -77325307 + (CA)n Simple_repeat Simple_repeat 1 24 0 322 268 192 56 chr15 24055214 24055279 -77325242 - MIR SINE MIR -199 63 8 303 248 53 60 chr15 24058054 24058187 -77322334 + L1MEd LINE L1 957 1088 -5031 227 290 21 43 chr15 24058229 24058322 -77322199 + LTR67 LTR ERVL 78 168 -389 282 294 178 33 chr15 24058591 24058771 -77321750 + ERVL LTR ERVL 2385 2590 -3174 235 258 88 25 chr15 24058800 24058959 -77321562 + L1M4 LINE L1 4541 4709 -1437 312 304 64 41 chr15 24059249 24059469 -77321052 + L1MEd LINE L1 3021 3245 -2884 2133 94 0 0 chr15 24059855 24060142 -77320379 + AluSc SINE Alu 15 301 -8 1795 119 60 11 chr15 24061669 24061954 -77318567 - AluSx SINE Alu -13 299 1 2609 241 35 52 chr15 24062787 24063533 -77316988 + MER21B LTR ERV1 19 751 -112 292 212 0 15 chr15 24063972 24064038 -77316483 - MLT1K LTR MaLR 0 588 524 237 258 52 52 chr15 24064086 24064183 -77316338 + MLT1G1 LTR MaLR 1 97 -498 245 230 50 30 chr15 24064356 24064471 -77316050 + MLT1H LTR MaLR 437 590 0 279 133 13 40 chr15 24065251 24065326 -77315195 + T-rich Low_complexity Low_complexity 3 75 0 195 42 0 0 chr15 24066759 24066783 -77313738 + (A)n Simple_repeat Simple_repeat 1 24 0 723 314 97 75 chr15 24067132 24067959 -77312562 + HAL1b LINE L1 1 845 -503 570 286 114 87 chr15 24068000 24068727 -77311794 + L1M2 LINE L1 2614 3387 -3461 22 0 0 0 chr15 24068785 24068807 -77311714 + AT_rich Low_complexity Low_complexity 1 22 0 250 286 87 29 chr15 24068807 24069292 -77311229 + L1M2 LINE L1 3516 4054 -2794 1232 237 26 66 chr15 24069393 24069895 -77310626 + L1ME4a LINE L1 4746 5227 -919 2399 213 59 0 chr15 24069902 24070408 -77310113 + L1MD1 LINE L1 5707 6242 0 521 307 164 17 chr15 24070570 24071101 -77309420 + L1ME4a LINE L1 5287 5895 -226 284 293 30 10 chr15 24071145 24071244 -77309277 + L1ME4a LINE L1 5964 6064 -57 881 173 0 14 chr15 24073398 24073767 -77306754 + CT-rich Low_complexity Low_complexity 1 363 0 194 88 0 29 chr15 24073769 24073803 -77306718 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr15 24074041 24074062 -77306459 + AT_rich Low_complexity Low_complexity 1 21 0 189 154 0 0 chr15 24074956 24074995 -77305526 + (CTA)n Simple_repeat Simple_repeat 2 40 0 2343 92 7 3 chr15 24075216 24075522 -77304999 + AluSc SINE Alu 1 307 -2 582 255 64 21 chr15 24076192 24076380 -77304141 - MIR SINE MIR -11 251 56 1631 181 28 39 chr15 24077248 24077635 -77302886 + MLT1B LTR MaLR 1 383 -7 402 39 0 0 chr15 24077717 24077769 -77302752 + (TG)n Simple_repeat Simple_repeat 2 53 0 1351 217 95 0 chr15 24078278 24078624 -77301897 - MLT1B LTR MaLR -11 379 1 239 265 12 12 chr15 24078941 24079024 -77301497 + CT-rich Low_complexity Low_complexity 1 83 0 229 305 78 39 chr15 24081537 24081665 -77298856 - MIR SINE MIR -18 244 112 2869 221 18 15 chr15 24081754 24082559 -77297962 - L1 LINE L1 -3324 3058 2244 729 127 25 0 chr15 24082559 24082677 -77297844 + L1MB1 LINE L1 6048 6168 0 386 215 68 61 chr15 24083215 24083378 -77297143 + MER103 DNA DNA 1 164 -2 233 333 143 0 chr15 24083828 24083975 -77296546 - L3 LINE CR1 -236 1341 1174 223 297 27 63 chr15 24084456 24084567 -77295954 - MIR3 SINE MIR -6 202 96 299 305 23 23 chr15 24084572 24084703 -77295818 - L2 LINE L2 -1 3312 3182 406 344 66 35 chr15 24086047 24086530 -77293991 + L1MCc LINE L1 40 537 -5886 1633 268 93 22 chr15 24086648 24087904 -77292617 + L1MCc LINE L1 830 2179 -4762 1058 180 0 0 chr15 24087902 24088096 -77292425 + L1M4 LINE L1 5620 5813 -361 * 2760 207 23 16 chr15 24088093 24088707 -77291814 + L1MB5 LINE L1 5344 5961 -213 6996 254 84 46 chr15 24088713 24092150 -77288371 - L1M4c LINE L1 -1188 5194 1515 1426 225 169 6 chr15 24092352 24093410 -77287111 + L1ME1 LINE L1 4853 6137 -29 1518 167 8 8 chr15 24093514 24093759 -77286762 - AluJo SINE Alu -67 245 1 23 0 0 0 chr15 24093762 24093785 -77286736 + AT_rich Low_complexity Low_complexity 1 23 0 1033 268 77 18 chr15 24093860 24094319 -77286202 + L1ME1 LINE L1 5663 6144 -22 225 154 0 0 chr15 24094864 24094903 -77285618 + T-rich Low_complexity Low_complexity 4 42 0 232 190 35 0 chr15 24094904 24094962 -77285559 + CT-rich Low_complexity Low_complexity 3 62 0 23 0 0 0 chr15 24096073 24096096 -77284425 + AT_rich Low_complexity Low_complexity 1 23 0 400 278 129 72 chr15 24101878 24102162 -77278359 - L2 LINE L2 0 3313 3047 2080 102 0 0 chr15 24102162 24102428 -77278093 + AluSx SINE Alu 33 298 -14 400 278 129 72 chr15 24102428 24102659 -77277862 - L2 LINE L2 -266 3047 2776 7342 223 64 47 chr15 24102662 24103350 -77277171 + L1MB3 LINE L1 2777 3452 -2714 1802 179 3 10 chr15 24103350 24103640 -77276881 + AluJb SINE Alu 1 288 -24 7342 223 64 47 chr15 24103640 24103951 -77276570 + L1MB3 LINE L1 3452 3756 -2410 2214 98 41 0 chr15 24103951 24104246 -77276275 + AluSc SINE Alu 2 308 -1 7342 223 64 47 chr15 24104246 24105871 -77274650 + L1MB3 LINE L1 3756 5441 -725 1134 138 37 0 chr15 24105873 24106061 -77274460 + L1MB3 LINE L1 5618 5812 -359 1038 214 97 35 chr15 24107185 24107475 -77273046 + MER92B LTR ERV1 1 308 -328 862 197 25 25 chr15 24107543 24107746 -77272775 + MER92B LTR ERV1 434 636 0 238 118 0 171 chr15 24108763 24108839 -77271682 - LTR39 LTR ERV1 -720 63 1 912 96 0 7 chr15 24109227 24109362 -77271159 - L1PB1 LINE L1 0 6151 6018 1439 158 22 19 chr15 24110168 24110481 -77270040 - LTR23 LTR ERV1 0 467 122 1650 133 59 11 chr15 24110600 24110871 -77269650 - AluSx SINE Alu -18 294 11 944 199 0 6 chr15 24114148 24114329 -77266192 + L1MB3 LINE L1 5997 6176 -7 210 319 103 36 chr15 24116321 24116489 -77264032 - MIR SINE MIR -58 150 8 2042 30 0 0 chr15 24116688 24116924 -77263597 - L1PA2 LINE L1 -1133 5013 4778 7892 19 2 0 chr15 24116924 24118073 -77262448 + L1PA2 LINE L1 5004 6155 0 308 176 30 5 chr15 24118555 24118636 -77261885 + MLT1H LTR MaLR 41 164 -385 374 311 23 15 chr15 24120152 24120284 -77260237 - L2 LINE L2 -5 3308 3176 1971 225 43 82 chr15 24120287 24120389 -77260132 + L1M4c LINE L1 6 110 -6170 1581 210 92 16 chr15 24120389 24120822 -77259699 - MLT1C LTR MaLR 0 467 2 1971 225 43 82 chr15 24120822 24121164 -77259357 + L1M4c LINE L1 110 464 -5816 362 69 17 0 chr15 24121164 24121222 -77259299 + (CA)n Simple_repeat Simple_repeat 2 60 0 1971 225 43 82 chr15 24121222 24121829 -77258692 + L1M4c LINE L1 464 1124 -5156 1398 151 12 8 chr15 24121829 24122081 -77258440 + L1MB3 LINE L1 5931 6183 0 1971 225 43 82 chr15 24122081 24122265 -77258256 + L1M4c LINE L1 1124 1314 -4966 3462 243 32 1 chr15 24122279 24122639 -77257882 + L1M4c LINE L1 2039 2386 -3996 1979 95 4 0 chr15 24122639 24122891 -77257630 + AluSq SINE Alu 61 313 0 3462 243 32 1 chr15 24122891 24124238 -77256283 + L1M4c LINE L1 2386 3955 -2427 189 0 0 0 chr15 24124379 24124400 -77256121 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 3073 181 8 2 chr15 24124769 24125305 -77255216 - L1PA16 LINE L1 -11 6155 5617 364 315 242 25 chr15 24125308 24126364 -77254157 - L2 LINE L2 -419 2895 1610 201 267 33 17 chr15 24126464 24126524 -77253997 - L2 LINE L2 -1877 1437 1377 2188 131 0 0 chr15 24126941 24127238 -77253283 - AluSx SINE Alu -15 297 1 193 243 114 0 chr15 24127961 24128031 -77252490 - MER5A DNA MER1_type -84 105 28 195 258 45 61 chr15 24128704 24128770 -77251751 - MIR SINE MIR -180 82 18 261 388 23 9 chr15 24130277 24130496 -77250025 + HERV16 LTR ERVL 1258 1479 -3517 615 332 60 17 chr15 24130630 24131049 -77249472 + HERV16 LTR ERVL 1785 2221 -3543 1262 335 28 19 chr15 24131177 24131791 -77248730 + HERV16 LTR ERVL 2984 3602 -2162 329 315 45 0 chr15 24134608 24134697 -77245824 + MIR3 SINE MIR 111 203 -5 628 190 22 0 chr15 24135195 24135332 -77245189 - L1MA10 LINE L1 0 6334 6195 736 242 41 0 chr15 24135342 24135536 -77244985 - L1M4 LINE L1 -538 5636 5435 2279 151 12 24 chr15 24135536 24135947 -77244574 - L1MB3 LINE L1 -1 6182 5777 269 214 66 88 chr15 24185981 24186163 -77194358 + LTR8A LTR ERV1 497 674 -53 816 251 39 39 chr15 24187201 24187500 -77193021 + MER46C DNA MER2_type 1 299 -39 346 48 0 0 chr15 24187500 24187542 -77192979 + MER39B LTR ERV1 4 45 -608 325 172 0 0 chr15 24187542 24187600 -77192921 + MER57B LTR ERV1 1 58 -376 1875 90 4 0 chr15 24187700 24187934 -77192587 + AluSp SINE Alu 63 297 -16 2178 211 14 53 chr15 24187934 24188415 -77192106 - L1ME1 LINE L1 -312 5854 5397 2392 117 0 0 chr15 24188415 24188723 -77191798 - AluSx SINE Alu -4 308 1 2178 211 14 53 chr15 24188723 24188804 -77191717 - L1ME1 LINE L1 -769 5397 5314 602 255 25 12 chr15 24188816 24189059 -77191462 + L1M4 LINE L1 3090 3335 -2811 1764 268 47 38 chr15 24189074 24189608 -77190913 - MLT1E2 LTR MaLR -68 558 20 447 281 0 0 chr15 24189617 24189738 -77190783 - L1ME1 LINE L1 -1564 4582 4462 2658 221 30 25 chr15 24189739 24191024 -77189497 + L1ME1 LINE L1 4601 5893 -273 279 114 0 0 chr15 24191136 24191180 -77189341 + (CA)n Simple_repeat Simple_repeat 1 44 0 821 85 78 8 chr15 24191180 24191309 -77189212 + L1MA9 LINE L1 5793 5930 -382 303 280 5 0 chr15 24194360 24194562 -77185959 + (CA)n Simple_repeat Simple_repeat 1 203 0 381 305 6 0 chr15 24194580 24194757 -77185764 + (CA)n Simple_repeat Simple_repeat 2 179 0 186 43 0 0 chr15 24195027 24195050 -77185471 + (CAGCT)n Simple_repeat Simple_repeat 2 24 0 802 222 116 81 chr15 24195352 24195722 -77184799 - MLT1D LTR MaLR -122 383 1 413 305 53 0 chr15 24195887 24196038 -77184483 + MIR SINE MIR 69 227 -35 2249 81 28 3 chr15 24197337 24197622 -77182899 + AluSg SINE Alu 1 292 -18 336 191 15 0 chr15 24197933 24198001 -77182520 - L2 LINE L2 -16 3297 3229 4806 59 2 7 chr15 24198051 24198645 -77181876 + LTR10C LTR ERV1 1 591 0 979 232 35 48 chr15 24199214 24199297 -77181224 + L1M4 LINE L1 2676 2759 -3387 1974 141 0 0 chr15 24199297 24199574 -77180947 + AluSx SINE Alu 3 279 -33 396 0 0 0 chr15 24199574 24199618 -77180903 + (CA)n Simple_repeat Simple_repeat 1 44 0 979 232 35 48 chr15 24199618 24199908 -77180613 + L1M4 LINE L1 2757 3045 -3101 * 2493 223 81 59 chr15 24199902 24200952 -77179569 + L1M4 LINE L1 3802 4874 -1272 2335 77 10 13 chr15 24201706 24202028 -77178493 - AluSq SINE Alu 0 321 1 1395 232 72 79 chr15 24202907 24203726 -77176795 + L1MB7 LINE L1 620 5652 -992 416 167 15 83 chr15 24203727 24203859 -77176662 + L1MB5 LINE L1 5955 6077 -107 1460 209 28 33 chr15 24203859 24204252 -77176269 - LTR7 LTR ERV1 0 450 60 360 160 0 27 chr15 24204282 24204357 -77176164 + L1MB4 LINE L1 6096 6168 -12 286 124 11 56 chr15 24204370 24204459 -77176062 + (CATATA)n Simple_repeat Simple_repeat 2 86 0 215 374 9 9 chr15 24205943 24206050 -77174471 - MIR SINE MIR -77 131 25 224 238 48 32 chr15 24206962 24207025 -77173496 - MIR SINE MIR -32 230 167 2230 259 47 29 chr15 24207506 24208369 -77172152 - L1ME3A LINE L1 -199 5971 5089 398 143 11 66 chr15 24209848 24209939 -77170582 - L1ME LINE L1 -705 5459 5374 2900 216 41 33 chr15 24212261 24213086 -77167435 + L1MB7 LINE L1 5851 6682 0 312 120 0 0 chr15 24213215 24213265 -77167256 + (TTATA)n Simple_repeat Simple_repeat 4 53 0 5017 138 65 32 chr15 24213508 24213996 -77166525 + MER4D LTR ERV1 1 532 -371 618 24 0 24 chr15 24213996 24214078 -77166443 + L1PA2 LINE L1 6076 6155 0 5017 138 65 32 chr15 24214078 24214463 -77166058 + MER4D LTR ERV1 532 903 0 3795 141 10 7 chr15 24214588 24215184 -77165337 + LTR8A LTR ERV1 1 598 -129 2216 171 30 2 chr15 24215287 24215713 -77164808 - L1P LINE L1 -2892 3254 2817 992 274 31 26 chr15 24215771 24216223 -77164298 - L1ME LINE L1 -5070 1000 547 532 268 100 52 chr15 24216475 24216934 -77163587 - L1ME LINE L1 -5587 483 3 21 0 0 0 chr15 24216988 24217009 -77163512 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr15 24217478 24217507 -77163014 + AT_rich Low_complexity Low_complexity 1 29 0 1754 169 23 10 chr15 24217620 24217922 -77162599 + AluJb SINE Alu 2 307 -5 570 260 104 89 chr15 24219261 24219764 -77160757 - L2 LINE L2 -22 3291 2758 902 217 82 25 chr15 24220253 24220397 -77160124 + L1MDb LINE L1 9 174 -6235 2524 87 25 33 chr15 24220397 24220764 -77159757 + THE1B LTR MaLR 1 364 0 902 217 82 25 chr15 24220764 24220863 -77159658 + L1MDb LINE L1 174 266 -6143 524 147 0 74 chr15 24221100 24221195 -77159326 + THE1B LTR MaLR 277 364 0 2770 210 74 7 chr15 24221552 24222157 -77158364 + L1MDb LINE L1 569 1214 -5195 185 179 0 54 chr15 24222248 24222304 -77158217 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 212 323 20 40 chr15 24222460 24222559 -77157962 - L2 LINE L2 -157 3115 3019 189 258 32 65 chr15 24223333 24223426 -77157095 + MIR SINE MIR 42 131 -77 328 171 48 4 chr15 24223448 24223530 -77156991 - MLT1A1 LTR MaLR -73 301 227 2739 201 51 48 chr15 24223538 24224247 -77156274 + L1MDb LINE L1 1200 1914 -4492 2320 101 3 0 chr15 24224247 24224544 -77155977 + AluSc SINE Alu 1 298 -11 2739 201 51 48 chr15 24224544 24224672 -77155849 + L1MDb LINE L1 1914 2040 -4366 723 233 84 32 chr15 24224678 24224927 -77155594 + L1MDb LINE L1 2101 2362 -4044 1138 227 97 25 chr15 24224929 24225250 -77155271 + MER2 DNA MER2_type 1 344 -1 3396 271 28 9 chr15 24225252 24226596 -77153925 + L1MDb LINE L1 2363 3787 -2619 5739 93 94 29 chr15 24226603 24227689 -77152832 + MER11A LTR ERVK 1 1261 -5 598 193 29 71 chr15 24228085 24228302 -77152219 - BSR/Beta Satellite Satellite -8 207 1 595 239 8 38 chr15 24228321 24228729 -77151792 - BSR/Beta Satellite Satellite -4 395 1 401 80 0 0 chr15 24228730 24228780 -77151741 + THE1B LTR MaLR 315 364 0 2964 66 8 0 chr15 24228780 24229158 -77151363 + THE1B-int LTR MaLR 1 381 -1199 8161 86 15 85 chr15 24230154 24230405 -77150116 + THE1B-int LTR MaLR 367 634 -946 2314 97 0 0 chr15 24230405 24230704 -77149817 + AluY SINE Alu 1 299 -12 8161 86 15 85 chr15 24230704 24231750 -77148771 + THE1B-int LTR MaLR 634 1574 -6 2336 138 36 20 chr15 24231755 24232111 -77148410 + THE1B LTR MaLR 1 362 -2 1357 213 94 3 chr15 24232360 24232680 -77147841 + L1MDb LINE L1 3805 4153 -2253 542 222 194 0 chr15 24232681 24232825 -77147696 + MLT1D LTR MaLR 334 505 0 518 231 0 0 chr15 24232825 24232932 -77147589 + MLT1D LTR MaLR 75 181 -324 790 342 75 37 chr15 24233099 24233519 -77147002 + ERVL LTR ERVL 4516 4979 -785 4208 109 45 5 chr15 24233519 24234098 -77146423 + LTR43 LTR ERV1 1 602 0 790 342 75 37 chr15 24234098 24234435 -77146086 + ERVL LTR ERVL 4979 5302 -462 316 263 91 10 chr15 24234822 24234921 -77145600 + LTR33 LTR ERVL 102 208 -313 245 276 60 26 chr15 24235127 24235243 -77145278 + L1ME LINE L1 5690 5809 -312 241 128 0 0 chr15 24236979 24237026 -77143495 - Alu SINE Alu -1 299 253 2475 83 0 0 chr15 24238374 24238675 -77141846 + AluSx SINE Alu 1 301 -11 1662 123 8 11 chr15 24239541 24239809 -77140712 + L1MA4 LINE L1 6018 6284 -16 327 272 158 38 chr15 24240085 24240269 -77140252 + HAL1b LINE L1 311 516 -832 1995 148 51 21 chr15 24240269 24240642 -77139879 - MSTB1 LTR MaLR -48 384 1 1296 274 60 49 chr15 24240795 24241791 -77138730 + L1MDb LINE L1 3162 4168 -2238 283 258 0 86 chr15 24241900 24242028 -77138493 + L1MDb LINE L1 4212 4328 -2078 2286 204 58 49 chr15 24242034 24242588 -77137933 - MER68 LTR ERV1 0 562 4 2475 279 81 32 chr15 24242620 24244229 -77136292 + L1MDb LINE L1 4556 5492 -914 2254 110 7 3 chr15 24244229 24244538 -77135983 + AluSg SINE Alu 1 310 0 2475 279 81 32 chr15 24244538 24244707 -77135814 + L1MDb LINE L1 5492 5651 -755 354 88 53 0 chr15 24244712 24244769 -77135752 - MSTB1 LTR MaLR -2 430 371 1243 166 45 14 chr15 24244769 24244992 -77135529 + AluJb SINE Alu 82 311 -1 2030 142 49 30 chr15 24244993 24245359 -77135162 - MSTB1 LTR MaLR -59 373 1 4876 229 87 50 chr15 24245372 24246894 -77133627 + L1MC4a LINE L1 6489 8067 -1 432 232 20 10 chr15 24247018 24247117 -77133404 - L1MEd LINE L1 -5366 753 654 9002 183 34 13 chr15 24247324 24247354 -77133167 + L1PA15 LINE L1 3653 3681 -2484 561 68 0 0 chr15 24247354 24247428 -77133093 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 9002 183 34 13 chr15 24247428 24249848 -77130673 + L1PA15 LINE L1 3681 6165 0 523 343 53 20 chr15 24250686 24250931 -77129590 - MIR SINE MIR 0 262 10 4491 137 3 13 chr15 24252493 24253181 -77127340 + L1MC1 LINE L1 5636 6316 -17 522 211 0 0 chr15 24253192 24253287 -77127234 + L1M4b LINE L1 1042 1136 -5723 * 877 236 31 49 chr15 24253273 24253631 -77126890 + L1M4b LINE L1 2869 3219 -3738 1674 255 63 74 chr15 24253694 24254751 -77125770 + L1M4c LINE L1 766 1811 -4573 210 37 0 0 chr15 24254751 24254778 -77125743 + (CA)n Simple_repeat Simple_repeat 2 28 0 930 176 7 0 chr15 24254781 24254934 -77125587 - Tigger2 DNA MER2_type -4 2714 2561 1331 168 4 9 chr15 24254936 24255162 -77125359 - AluJb SINE Alu -16 296 72 738 99 0 0 chr15 24255163 24255274 -77125247 - Tigger2 DNA MER2_type -147 2571 2461 3397 149 53 0 chr15 24255328 24255891 -77124630 - Tigger2 DNA MER2_type -1961 757 165 297 68 0 0 chr15 24255911 24255955 -77124566 + (TG)n Simple_repeat Simple_repeat 2 45 0 5666 123 21 13 chr15 24256035 24257437 -77123084 - L1PA13 LINE L1 -4 6159 4795 1113 133 12 6 chr15 24257438 24257611 -77122910 - Tigger2 DNA MER2_type -2544 174 1 381 304 60 36 chr15 24257615 24258103 -77122418 + L1M4c LINE L1 1990 2437 -3947 2403 232 29 9 chr15 24258115 24258780 -77121741 + L1M4c LINE L1 2524 3201 -3181 439 279 44 33 chr15 24259552 24259805 -77120716 - L1MA10 LINE L1 0 6321 5915 1651 138 57 40 chr15 24259831 24260129 -77120392 - AluSx SINE Alu -5 307 5 659 89 50 0 chr15 24260227 24260328 -77120193 + AluSp SINE Alu 2 107 -206 3794 142 30 2 chr15 24260502 24260542 -77119979 + MER39B LTR ERV1 6 43 -610 3152 111 9 2 chr15 24260542 24260973 -77119548 + MER57B LTR ERV1 1 434 0 3794 142 30 2 chr15 24260973 24261559 -77118962 + MER39B LTR ERV1 43 650 -3 528 295 18 26 chr15 24262514 24262741 -77117780 + L1MD2 LINE L1 5487 5711 -455 2022 133 13 3 chr15 24262752 24263060 -77117461 - AluJb SINE Alu -1 311 1 908 266 117 5 chr15 24263064 24263389 -77117132 + L1MD2 LINE L1 5819 6166 0 218 292 14 0 chr15 24263554 24263626 -77116895 + (CATAT)n Simple_repeat Simple_repeat 3 75 0 2120 127 0 10 chr15 24263675 24263974 -77116547 + AluSx SINE Alu 1 296 -16 1965 150 6 13 chr15 24266961 24267274 -77113247 - AluSx SINE Alu 0 312 2 2530 97 26 3 chr15 24268054 24268406 -77112115 - L1PB1 LINE L1 0 6151 5792 420 20 0 0 chr15 24268406 24268455 -77112066 + (CA)n Simple_repeat Simple_repeat 1 49 0 406 143 0 39 chr15 24269989 24270066 -77110455 + AluJ/FLAM SINE Alu 18 91 -211 2290 99 3 0 chr15 24270361 24270655 -77109866 + AluSp SINE Alu 1 295 -18 186 250 73 0 chr15 24270696 24270764 -77109757 + MIR SINE MIR 67 139 -69 2226 52 0 0 chr15 24272236 24272505 -77108016 + L1PA5 LINE L1 5883 6151 -3 357 43 0 0 chr15 24274887 24274934 -77105587 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 2051 119 0 11 chr15 24274936 24275221 -77105300 + AluSx SINE Alu 20 301 -11 7346 44 6 0 chr15 24275221 24276244 -77104277 + L1PA7 LINE L1 5114 6141 -13 186 71 0 0 chr15 24276248 24276276 -77104245 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 38 39 0 0 chr15 24276276 24276328 -77104193 + AT_rich Low_complexity Low_complexity 1 52 0 225 98 59 20 chr15 24276397 24276448 -77104073 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 393 241 0 0 chr15 24276835 24276918 -77103603 + L1MEc LINE L1 1943 2025 -4371 3955 248 83 22 chr15 24276921 24278629 -77101892 + L1MEc LINE L1 2060 3823 -2392 328 172 0 17 chr15 24278935 24278993 -77101528 + MLT1I LTR MaLR 346 402 -7 194 274 27 14 chr15 24279006 24279079 -77101442 + MER5A DNA MER1_type 82 155 -34 2201 109 0 3 chr15 24280249 24280575 -77099946 - AluSx SINE Alu 0 325 1 248 250 66 0 chr15 24280580 24280656 -77099865 - L1M LINE L1 -772 5394 5314 584 255 26 13 chr15 24280668 24280899 -77099622 + L1M4 LINE L1 3090 3323 -2823 2359 71 20 3 chr15 24281442 24281738 -77098783 + AluY SINE Alu 3 303 -8 708 204 70 50 chr15 24283510 24283711 -77096810 - ORSL DNA AcHobo -41 234 30 22 0 0 0 chr15 24284632 24284654 -77095867 + AT_rich Low_complexity Low_complexity 1 22 0 5889 150 17 21 chr15 24286560 24287554 -77092967 - L1PB3 LINE L1 -2 6152 5155 558 0 0 0 chr15 24287554 24287616 -77092905 + (TTTTA)n Simple_repeat Simple_repeat 2 63 0 2106 106 0 14 chr15 24287619 24287903 -77092618 - AluSx SINE Alu -32 280 1 5889 150 17 21 chr15 24287903 24288941 -77091580 - L1PB3 LINE L1 -1001 5153 4125 2061 132 0 4 chr15 24289218 24289498 -77091023 + AluSx SINE Alu 1 279 -33 6729 232 57 23 chr15 24290119 24292125 -77088396 - L1MEc LINE L1 -1092 5123 3050 624 248 33 26 chr15 24292149 24292302 -77088219 + MER58A DNA MER1_type 71 224 0 239 180 0 0 chr15 24292312 24292362 -77088159 - L1MEc LINE L1 -3170 3045 2996 1593 182 29 66 chr15 24292362 24292742 -77087779 + MLT1A2 LTR MaLR 1 366 -8 1958 232 80 5 chr15 24292750 24293388 -77087133 - L1MEc LINE L1 -3215 3000 2356 2160 108 10 3 chr15 24293424 24293719 -77086802 - AluSq SINE Alu -16 297 1 339 219 0 0 chr15 24293764 24293828 -77086693 + Tigger5 DNA MER2_type 1 64 -2259 1491 128 21 4 chr15 24293847 24294081 -77086440 + Tigger5 DNA MER2_type 2085 2322 -1 5596 250 58 73 chr15 24294090 24294434 -77086087 - L1MEc LINE L1 -4070 2326 1978 1896 132 0 51 chr15 24294434 24294745 -77085776 - AluY SINE Alu -15 296 2 5596 250 58 73 chr15 24294745 24295010 -77085511 - L1MEc LINE L1 -4418 1978 1710 2395 73 0 13 chr15 24295010 24295311 -77085210 - AluY SINE Alu -14 297 1 5596 250 58 73 chr15 24295311 24297025 -77083496 - L1MEc LINE L1 -4686 1710 38 669 237 63 5 chr15 24298875 24299065 -77081456 - L1MA4 LINE L1 -14 6286 6086 1601 59 0 0 chr15 24299437 24299646 -77080875 - AluSg/x SINE Alu 0 306 98 2189 125 0 0 chr15 24300580 24300875 -77079646 - AluSg SINE Alu -15 295 1 229 279 73 50 chr15 24301734 24301913 -77078608 - MIR SINE MIR -22 240 58 219 205 0 164 chr15 24302256 24302322 -77078199 + MIR SINE MIR 30 71 -137 2322 67 3 33 chr15 24302322 24302622 -77077899 + AluY SINE Alu 1 291 -20 219 205 0 164 chr15 24302622 24302678 -77077843 + MIR SINE MIR 71 135 -73 2051 161 29 5 chr15 24303190 24303569 -77076952 + MLT1B LTR MaLR 3 390 0 1493 197 100 3 chr15 24306130 24306605 -77073916 + L1MC4 LINE L1 5498 5782 -384 920 229 103 10 chr15 24306410 24306712 -77073809 + L1MB7 LINE L1 5846 6175 -9 * 2233 105 3 0 chr15 24307085 24307379 -77073142 - AluSx SINE Alu -17 295 1 1902 163 0 3 chr15 24307820 24308120 -77072401 + AluSx SINE Alu 1 299 -13 389 314 70 13 chr15 24308171 24308400 -77072121 - MIR SINE MIR 0 262 21 226 292 45 0 chr15 24308387 24308476 -77072045 + MIR3 SINE MIR 94 186 -22 * 2044 102 74 34 chr15 24309057 24309381 -77071140 + MER1B DNA MER1_type 1 337 0 3634 200 56 122 chr15 24309897 24310373 -77070148 + L1M2 LINE L1 2296 2802 -3344 1743 184 14 3 chr15 24310373 24310656 -77069865 - AluJo SINE Alu -20 292 7 3634 200 56 122 chr15 24310656 24310786 -77069735 + L1M2 LINE L1 2802 2939 -3207 2306 114 0 0 chr15 24310786 24311083 -77069438 - AluSg SINE Alu -13 297 1 3634 200 56 122 chr15 24311083 24311973 -77068548 + L1M2 LINE L1 2939 3695 -2451 861 156 4 24 chr15 24311973 24312218 -77068303 + GA-rich Low_complexity Low_complexity 1 240 0 292 141 13 103 chr15 24312218 24312296 -77068225 + L1P LINE L1 3673 3743 -2403 * 6443 20 0 0 chr15 24312294 24313031 -77067490 - L1PA3 LINE L1 -1137 5009 4273 7918 23 0 0 chr15 24313034 24314181 -77066340 + L1PA3 LINE L1 5005 6151 -4 8773 167 17 11 chr15 24314183 24316202 -77064319 + L1M2 LINE L1 3736 5764 -548 814 144 92 0 chr15 24316373 24316547 -77063974 - L1MEc LINE L1 -4204 2192 2003 415 226 168 15 chr15 24316645 24316851 -77063670 - L1MEc LINE L1 -4421 1975 1744 826 273 93 22 chr15 24317474 24317925 -77062596 - LTR33 LTR ERVL -2 519 37 414 285 111 12 chr15 24318456 24318628 -77061893 - MER5A DNA MER1_type 0 189 1 4176 209 66 13 chr15 24318860 24319998 -77060523 + L1MB4 LINE L1 3964 5040 -1140 1896 172 14 0 chr15 24319998 24320294 -77060227 + AluJb SINE Alu 1 300 -12 4176 209 66 13 chr15 24320294 24321257 -77059264 + L1MB4 LINE L1 5040 6179 -1 1977 151 3 20 chr15 24321272 24321576 -77058945 + AluJo SINE Alu 1 299 -13 2028 89 7 15 chr15 24321589 24321858 -77058663 + AluSx SINE Alu 39 305 -7 2108 117 11 0 chr15 24322558 24322865 -77057656 - AluSp SINE Alu 0 310 1 849 163 0 33 chr15 24322872 24323025 -77057496 - FAM SINE Alu 0 49 1 339 222 23 34 chr15 24325291 24325467 -77055054 + (TATATG)n Simple_repeat Simple_repeat 6 179 0 304 211 56 14 chr15 24325475 24325546 -77054975 + L1MCa LINE L1 1995 2068 -4358 187 221 13 26 chr15 24325565 24325642 -77054879 + (TATG)n Simple_repeat Simple_repeat 4 79 0 2356 109 27 29 chr15 24326014 24326390 -77054131 - THE1C LTR MaLR 0 375 1 180 217 150 0 chr15 24328946 24329006 -77051515 - L2 LINE L2 -36 3236 3168 900 181 19 0 chr15 24330699 24330854 -77049667 + FRAM SINE Alu 1 151 -25 1520 264 59 22 chr15 24331838 24332379 -77048142 + L1M4 LINE L1 1 561 -5981 948 238 88 11 chr15 24332381 24332642 -77047879 + L1M4 LINE L1 587 867 -5675 678 165 0 0 chr15 24332744 24332853 -77047668 + FRAM SINE Alu 63 171 -5 381 232 130 72 chr15 24332854 24332992 -77047529 + L1MC/D LINE L1 4986 5131 -1015 2130 130 3 7 chr15 24332995 24333294 -77047227 + AluSx SINE Alu 1 298 -14 243 100 25 0 chr15 24333294 24333334 -77047187 + Alu SINE Alu 1 41 -262 815 195 31 22 chr15 24333344 24333619 -77046902 + L1MC/D LINE L1 5188 5464 -743 246 47 0 70 chr15 24333920 24333963 -77046558 + LTR10C LTR ERV1 112 151 -440 433 240 79 104 chr15 24334715 24335069 -77045452 + MER68 LTR ERV1 68 412 -150 184 252 15 114 chr15 24335730 24335861 -77044660 - MIR SINE MIR -80 182 65 1518 198 106 25 chr15 24336748 24337107 -77043414 + MLT1B LTR MaLR 3 390 0 303 269 10 10 chr15 24337700 24337804 -77042717 - MER69 DNA AcHobo -1 2525 2422 1707 166 3 14 chr15 24337856 24338145 -77042376 + AluJo SINE Alu 3 288 -24 29 0 0 0 chr15 24338150 24338179 -77042342 + AT_rich Low_complexity Low_complexity 1 29 0 385 273 128 14 chr15 24340190 24340467 -77040054 + MER39 LTR ERV1 397 538 -4 228 188 24 35 chr15 24340564 24340649 -77039872 + GA-rich Low_complexity Low_complexity 3 86 0 270 301 29 19 chr15 24342867 24342970 -77037551 + L1ME3A LINE L1 320 423 -5702 428 270 51 15 chr15 24343255 24343451 -77037070 + L1M4 LINE L1 844 1046 -5080 269 258 11 65 chr15 24345158 24345344 -77035177 + (CA)n Simple_repeat Simple_repeat 1 176 0 182 269 167 0 chr15 24345366 24345444 -77035077 - L2 LINE L2 -3 3310 3220 269 286 92 0 chr15 24347079 24347177 -77033344 + L2 LINE L2 3202 3308 -5 2289 116 0 0 chr15 24350037 24350338 -77030183 - AluSx SINE Alu -2 310 10 852 140 129 0 chr15 24350834 24351005 -77029516 + MER3 DNA MER1_type 1 193 -16 2865 117 144 14 chr15 24352138 24352700 -77027821 + LTR24C LTR ERV1 1 635 0 1008 106 35 0 chr15 24352961 24353131 -77027390 - MER20 DNA MER1_type 0 219 44 2403 82 3 31 chr15 24353866 24354185 -77026336 + AluSg SINE Alu 1 310 0 1391 180 73 38 chr15 24355377 24355666 -77024855 + AluJo SINE Alu 1 299 -13 1761 175 3 7 chr15 24355856 24356148 -77024373 + AluJb SINE Alu 1 291 -21 705 284 25 80 chr15 24357200 24357689 -77022832 - L1ME4a LINE L1 -47 6074 5613 351 243 69 28 chr15 24358966 24359110 -77021411 - MIR SINE MIR 0 262 113 258 165 46 9 chr15 24359358 24359467 -77021054 + CT-rich Low_complexity Low_complexity 2 114 0 263 250 0 0 chr15 24360044 24360104 -77020417 + L1ME3A LINE L1 650 709 -5833 7595 215 36 37 chr15 24360158 24360936 -77019585 + L1ME3A LINE L1 2626 3403 -3241 1938 162 7 76 chr15 24360936 24361116 -77019405 + MLT1B LTR MaLR 1 192 -198 2332 112 3 0 chr15 24361116 24361421 -77019100 + AluSg SINE Alu 1 306 -4 1938 162 7 76 chr15 24361421 24361659 -77018862 + MLT1B LTR MaLR 192 390 0 7595 215 36 37 chr15 24361659 24363060 -77017461 + L1ME3A LINE L1 3403 4815 -1829 573 232 58 0 chr15 24363060 24363215 -77017306 + L1ME3A LINE L1 6277 6440 -228 1996 132 0 44 chr15 24363706 24364044 -77016477 + AluSx SINE Alu 1 325 0 1277 234 40 66 chr15 24365934 24366493 -77014028 - L1MEc LINE L1 -3547 2668 2154 1993 73 4 0 chr15 24566493 24566738 -76813783 - AluSc SINE Alu -63 246 1 32 26 0 0 chr15 24566748 24566787 -76813734 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr15 24566947 24566968 -76813553 + AT_rich Low_complexity Low_complexity 1 21 0 633 214 30 40 chr15 24566969 24567170 -76813351 + L1MC5 LINE L1 6977 7175 -786 405 299 47 16 chr15 24567180 24567307 -76813214 + MER5B DNA MER1_type 48 178 0 279 304 54 20 chr15 24567398 24567546 -76812975 + L2 LINE L2 2942 3094 -178 500 271 47 10 chr15 24567637 24567829 -76812692 - L1ME1 LINE L1 -114 5986 5788 2416 86 7 0 chr15 24567969 24568270 -76812251 + AluSp SINE Alu 1 303 -10 2475 157 26 28 chr15 24569788 24570214 -76810307 + MSTB LTR MaLR 1 425 -1 2247 154 24 0 chr15 24570317 24570700 -76809821 - L1MB3 LINE L1 0 6183 5792 207 0 0 0 chr15 24572030 24572053 -76808468 + (CA)n Simple_repeat Simple_repeat 1 23 0 180 0 0 0 chr15 24573327 24573347 -76807174 + (CAT)n Simple_repeat Simple_repeat 3 22 0 185 284 172 9 chr15 24576892 24577008 -76803513 + MIR SINE MIR 94 228 -34 925 198 36 5 chr15 24577446 24577638 -76802883 + MER82 DNA MER2_type 7 204 -449 1569 211 111 13 chr15 24577879 24578008 -76802513 + MER82 DNA MER2_type 227 342 -311 189 0 0 0 chr15 24578008 24578029 -76802492 + (CA)n Simple_repeat Simple_repeat 2 22 0 1569 211 111 13 chr15 24578029 24578288 -76802233 + MER82 DNA MER2_type 342 653 0 2205 131 0 3 chr15 24578711 24579016 -76801505 - AluSx SINE Alu -8 304 1 387 315 106 63 chr15 24579390 24579835 -76800686 + L1ME4a LINE L1 5639 6102 -19 401 179 12 0 chr15 24580565 24580649 -76799872 + GA-rich Low_complexity Low_complexity 1 85 0 1314 267 103 20 chr15 24580751 24581299 -76799222 - L1ME1 LINE L1 -298 5806 5165 2382 74 3 3 chr15 24581299 24581597 -76798924 - AluY SINE Alu -13 298 1 1314 267 103 20 chr15 24581597 24581784 -76798737 - L1ME1 LINE L1 -939 5165 4995 783 263 54 81 chr15 24581811 24581882 -76798639 - L1ME1 LINE L1 -3107 2973 2902 2658 146 50 7 chr15 24581882 24582342 -76798179 - L1MB2 LINE L1 -2 6169 5690 783 263 54 81 chr15 24582342 24583015 -76797506 - L1ME1 LINE L1 -3178 2902 2249 2965 185 189 6 chr15 24583017 24583740 -76796781 - L1MC3 LINE L1 -12 7773 6918 260 310 49 28 chr15 24584026 24584168 -76796353 - L1ME1 LINE L1 -5924 146 2 2425 74 0 10 chr15 24584309 24584618 -76795903 - AluY SINE Alu -5 306 1 713 336 109 41 chr15 24585068 24585487 -76795034 - L3 LINE CR1 -861 716 258 663 201 141 5 chr15 24585487 24585671 -76794850 - MER3 DNA MER1_type 0 209 1 713 336 109 41 chr15 24585671 24585736 -76794785 - L3 LINE CR1 -1319 258 199 1118 126 12 18 chr15 24585741 24585908 -76794613 - FRAM SINE Alu -9 167 2 2233 92 0 0 chr15 24587015 24587326 -76793195 + AluSc SINE Alu 1 311 0 250 268 18 36 chr15 24587821 24587933 -76792588 + CT-rich Low_complexity Low_complexity 3 112 0 484 282 49 69 chr15 24588268 24588425 -76792096 - HAL1 LINE L1 -1192 1315 1156 1846 110 110 11 chr15 24588425 24588706 -76791815 - AluSg SINE Alu 0 310 2 484 282 49 69 chr15 24588706 24589097 -76791424 - HAL1 LINE L1 -1351 1156 778 208 319 43 11 chr15 24589097 24589191 -76791330 + MER5B DNA MER1_type 23 119 -59 187 200 29 0 chr15 24589252 24589287 -76791234 - MER5B DNA MER1_type -134 44 9 408 225 7 63 chr15 24590704 24590846 -76789675 - L1MC4a LINE L1 -1973 5835 5702 243 326 7 0 chr15 24591038 24591176 -76789345 - L1P LINE L1 -726 5425 5287 24 0 0 0 chr15 24591528 24591552 -76788969 + AT_rich Low_complexity Low_complexity 1 24 0 2346 99 0 10 chr15 24591559 24591863 -76788658 + AluSq SINE Alu 1 301 -12 2095 71 4 0 chr15 24592281 24592533 -76787988 + AluSx SINE Alu 1 253 -59 3982 199 32 14 chr15 24592533 24593403 -76787118 - L1MA10 LINE L1 -39 6295 5410 21 71 0 0 chr15 24593824 24593866 -76786655 + AT_rich Low_complexity Low_complexity 1 42 0 582 316 28 43 chr15 24593874 24594438 -76786083 - L1M4 LINE L1 -1662 4484 3929 2339 116 3 0 chr15 24594453 24594764 -76785757 - AluSx SINE Alu 0 312 1 260 303 56 40 chr15 24594847 24594896 -76785625 - L1MC4 LINE L1 -99 7943 7896 2391 114 0 9 chr15 24594896 24595211 -76785310 - AluSx SINE Alu 0 312 1 260 303 56 40 chr15 24595211 24595412 -76785109 - L1MC4 LINE L1 -146 7896 7689 307 278 17 35 chr15 24596033 24596148 -76784373 - L1MC4a LINE L1 -391 7417 7305 2450 171 17 11 chr15 24596322 24596795 -76783726 - L1MB3 LINE L1 -233 5950 5475 536 304 84 4 chr15 24596854 24597081 -76783440 - MER119 DNA MER1_type -338 245 1 2277 62 0 117 chr15 24597487 24597839 -76782682 + AluY SINE Alu 1 311 0 635 299 21 0 chr15 24597897 24598091 -76782430 + L1MC5 LINE L1 6635 6832 -1129 678 216 40 109 chr15 24598137 24598466 -76782055 + L1MC5 LINE L1 6820 7125 -836 252 291 36 85 chr15 24598604 24598827 -76781694 + L1MC5 LINE L1 7316 7527 -434 2364 56 0 11 chr15 24598999 24599315 -76781206 - AluY SINE Alu 0 313 1 238 270 90 0 chr15 24600531 24600620 -76779901 - MLT1I LTR MaLR -243 166 70 2139 84 22 0 chr15 24602778 24603051 -76777470 - AluSx SINE Alu -14 298 20 2388 185 29 58 chr15 24603410 24603823 -76776698 + MLT1D LTR MaLR 1 397 -108 1941 170 3 3 chr15 24603823 24604135 -76776386 - AluJo SINE Alu 0 312 1 2388 185 29 58 chr15 24604135 24604241 -76776280 + MLT1D LTR MaLR 397 505 0 227 146 24 0 chr15 24606100 24606141 -76774380 + L2 LINE L2 3225 3266 -6 2060 141 0 0 chr15 24606728 24607025 -76773496 - AluJb SINE Alu -15 297 1 4951 201 36 16 chr15 24607038 24607603 -76772918 - L1MC3 LINE L1 -8 7777 7225 2497 85 3 0 chr15 24607603 24607909 -76772612 + AluY SINE Alu 1 307 -4 4951 201 36 16 chr15 24607909 24608258 -76772263 - L1MC3 LINE L1 -560 7225 6833 1942 174 21 6 chr15 24608258 24608597 -76771924 - MER2 DNA MER2_type 0 344 1 4951 201 36 16 chr15 24608597 24608829 -76771692 - L1MC3 LINE L1 -952 6833 6607 2311 113 7 0 chr15 24608836 24609137 -76771384 - AluSc SINE Alu -6 303 1 1277 133 6 0 chr15 24609137 24609318 -76771203 - AluSg/x SINE Alu -4 308 127 1419 202 0 8 chr15 24609538 24609795 -76770726 + AluJo SINE Alu 36 290 -22 255 335 112 22 chr15 24610039 24610218 -76770303 - MIR SINE MIR -48 214 20 1888 282 143 44 chr15 24610408 24611636 -76768885 + L2 LINE L2 1438 2786 -528 189 258 11 75 chr15 24611807 24611900 -76768621 + L2 LINE L2 3151 3237 -76 256 286 98 0 chr15 24611928 24612040 -76768481 + MER96 DNA MER1_type? 48 170 -5 302 299 9 9 chr15 24612394 24612501 -76768020 + MER112 DNA MER1_type 36 142 -118 314 328 24 16 chr15 24612592 24612717 -76767804 - MIR SINE MIR -62 146 21 290 233 33 22 chr15 24613171 24613261 -76767260 + MER5A DNA MER1_type 19 109 -80 24 32 0 0 chr15 24613779 24613810 -76766711 + AT_rich Low_complexity Low_complexity 1 31 0 3481 180 28 31 chr15 24613810 24614316 -76766205 - L1MB3 LINE L1 -7 6176 5673 2574 57 0 22 chr15 24614316 24614634 -76765887 - AluY SINE Alu 0 311 1 3481 180 28 31 chr15 24614634 24614927 -76765594 - L1MB3 LINE L1 -510 5673 5380 558 308 138 21 chr15 24615332 24615657 -76764864 + MLT1I LTR MaLR 47 409 0 2190 124 0 0 chr15 24616236 24616535 -76763986 - AluSc SINE Alu -2 307 9 2009 177 19 0 chr15 24616560 24616932 -76763589 + MLT1B LTR MaLR 12 390 0 187 239 90 30 chr15 24617001 24617068 -76763453 - L2 LINE L2 -51 3262 3192 1999 147 0 16 chr15 24617118 24617425 -76763096 + AluJb SINE Alu 1 302 -10 1903 164 3 10 chr15 24617435 24617733 -76762788 + AluJo SINE Alu 1 296 -16 255 271 27 59 chr15 24618554 24618682 -76761839 - MIR SINE MIR -37 171 48 635 254 11 16 chr15 24618849 24619034 -76761487 - L1MD2 LINE L1 -14 6739 6556 189 107 0 0 chr15 24619034 24619062 -76761459 + (TATG)n Simple_repeat Simple_repeat 4 31 0 513 243 95 7 chr15 24619064 24619212 -76761309 - L1MD2 LINE L1 -229 6524 6364 * 3445 210 28 38 chr15 24619204 24619638 -76760883 - L1MD2 LINE L1 -598 6155 5718 2335 80 0 0 chr15 24619638 24619937 -76760584 - AluSq SINE Alu -14 299 1 3445 210 28 38 chr15 24619937 24620991 -76759530 - L1MD2 LINE L1 -1035 5718 4674 2866 234 69 4 chr15 24620987 24622047 -76758474 - L1MD2 LINE L1 -3134 3406 2284 * 692 211 256 4 chr15 24622051 24622321 -76758200 - L1MD2 LINE L1 -4292 2248 1911 632 128 8 26 chr15 24622322 24622439 -76758082 - L1MB8 LINE L1 0 6178 6064 2391 78 0 0 chr15 24622580 24622887 -76757634 - AluY SINE Alu -4 307 1 22 35 0 0 chr15 24622893 24622922 -76757599 + AT_rich Low_complexity Low_complexity 1 29 0 3102 163 32 17 chr15 24622923 24623523 -76756998 - L1MB3 LINE L1 -2 6181 5573 229 303 46 0 chr15 24623566 24623675 -76756846 - L1MC5 LINE L1 -516 7445 7332 1048 217 14 0 chr15 24623782 24623994 -76756527 + MLT1B LTR MaLR 1 215 -175 653 213 0 0 chr15 24624138 24624260 -76756261 + FLAM_C SINE Alu 1 122 -11 942 9 0 0 chr15 24624278 24624385 -76756136 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 1990 103 14 0 chr15 24624387 24624677 -76755844 - AluSx SINE Alu -18 294 1 221 271 17 17 chr15 24625468 24625586 -76754935 + (TATAA)n Simple_repeat Simple_repeat 3 120 0 846 140 0 22 chr15 24625592 24625728 -76754793 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr15 24625957 24625978 -76754543 + AT_rich Low_complexity Low_complexity 1 21 0 607 280 84 108 chr15 24627210 24627839 -76752682 + HAL1b LINE L1 56 532 -816 3560 238 36 4 chr15 24627896 24628721 -76751800 + MER97a DNA MER1_type? 2 853 -41 441 339 24 51 chr15 24629051 24629515 -76751006 + L1MC/D LINE L1 2119 2536 -3679 263 267 74 48 chr15 24629675 24629986 -76750535 + L1MC/D LINE L1 2746 3064 -3151 546 307 76 57 chr15 24630030 24630398 -76750123 + L1MC/D LINE L1 3146 3520 -2695 357 342 26 0 chr15 24630405 24630522 -76749999 + L1MC/D LINE L1 3564 3683 -2532 318 264 88 65 chr15 24630616 24630957 -76749564 + L1MC/D LINE L1 4972 5320 -895 295 183 99 160 chr15 24630969 24631100 -76749421 + L1MC/D LINE L1 5483 5605 -2272 1168 309 82 35 chr15 24631382 24632207 -76748314 - L1M4 LINE L1 -1828 4318 3455 1300 195 123 9 chr15 24632291 24632609 -76747912 - MLT1A1 LTR MaLR -11 354 1 290 240 0 13 chr15 24633112 24633187 -76747334 + MIR SINE MIR 14 87 -175 201 247 76 101 chr15 24634903 24635061 -76745460 + MIR3 SINE MIR 23 176 -32 5823 171 43 1 chr15 24635423 24637361 -76743160 + L1PA16 LINE L1 4130 6157 -9 226 311 59 22 chr15 24637619 24637754 -76742767 - MLT1K LTR MaLR -81 507 368 234 0 0 0 chr15 24639142 24639168 -76741353 + (CCCTG)n Simple_repeat Simple_repeat 3 28 0 289 225 0 101 chr15 24639523 24639612 -76740909 - MIR SINE MIR -70 192 113 228 35 0 0 chr15 24640046 24640075 -76740446 + (TC)n Simple_repeat Simple_repeat 1 29 0 306 73 0 0 chr15 24640110 24640151 -76740370 + (TC)n Simple_repeat Simple_repeat 1 41 0 27 0 0 0 chr15 24641685 24641712 -76738809 + AT_rich Low_complexity Low_complexity 1 27 0 1435 130 138 8 chr15 24641712 24641966 -76738555 - AluSg1 SINE Alu -22 287 1 1851 153 91 18 chr15 24642008 24642348 -76738173 - MLT1A1 LTR MaLR 0 365 1 2446 170 118 26 chr15 24642425 24642924 -76737597 - MLT1F1 LTR MaLR -2 565 21 216 0 0 0 chr15 24642929 24642953 -76737568 + (TA)n Simple_repeat Simple_repeat 2 25 0 2077 113 3 13 chr15 24642955 24643256 -76737265 - AluSx SINE Alu -14 298 1 1124 265 54 62 chr15 24643399 24643468 -76737053 - L1ME3A LINE L1 -219 5951 5883 2166 96 0 0 chr15 24643468 24643759 -76736762 - AluSx SINE Alu -17 295 5 1124 265 54 62 chr15 24643759 24644354 -76736167 - L1ME3A LINE L1 -287 5883 5292 594 281 133 0 chr15 24644415 24644625 -76735896 + MIR SINE MIR 3 240 -22 1678 96 137 4 chr15 24645346 24645616 -76734905 + AluSq SINE Alu 2 307 -6 245 284 128 27 chr15 24649349 24649497 -76731024 - MIR SINE MIR -31 231 69 216 135 0 0 chr15 24653380 24653417 -76727104 + (T)n Simple_repeat Simple_repeat 1 37 0 320 299 51 26 chr15 24653656 24653773 -76726748 + L1ME LINE L1 66 185 -5934 362 337 155 47 chr15 24653815 24654066 -76726455 + L1ME LINE L1 4730 5037 -1092 2228 96 3 3 chr15 24654066 24654368 -76726153 + AluSx SINE Alu 2 303 -9 362 337 155 47 chr15 24654368 24654496 -76726025 + L1ME LINE L1 5037 5150 -979 440 274 125 0 chr15 24654498 24654666 -76725855 + L1ME LINE L1 5182 5370 -759 388 304 43 0 chr15 24654714 24654875 -76725646 + L1ME LINE L1 5448 5615 -538 341 202 30 71 chr15 24654878 24654898 -76725623 - MER112 DNA MER1_type -45 215 196 2103 176 60 56 chr15 24654898 24655416 -76725105 - MLT2B1 LTR ERVL 0 520 1 341 202 30 71 chr15 24655416 24655494 -76725027 - MER112 DNA MER1_type -64 196 121 1375 184 90 15 chr15 24655801 24656067 -76724454 - AluJb SINE Alu -12 290 5 220 298 0 18 chr15 24656319 24656376 -76724145 + L2 LINE L2 3200 3255 -17 1856 151 10 0 chr15 24656404 24656703 -76723818 - AluJb SINE Alu -2 310 9 497 243 53 13 chr15 24657233 24657385 -76723136 - MER103 DNA DNA -3 163 6 186 316 53 0 chr15 24657590 24657647 -76722874 + MIR SINE MIR 91 150 -58 248 314 81 0 chr15 24658620 24658706 -76721815 - MIR3 SINE MIR -45 163 71 944 265 72 46 chr15 24658794 24659167 -76721354 - MLT2C1 LTR ERVL -2 395 13 345 255 235 13 chr15 24659667 24659820 -76720701 + MER5A DNA MER1_type 3 189 0 393 245 151 69 chr15 24659836 24659876 -76720645 - MER5A DNA MER1_type -8 181 146 2199 105 0 0 chr15 24659876 24660180 -76720341 - AluSp SINE Alu -9 304 1 393 245 151 69 chr15 24660180 24660298 -76720223 - MER5A DNA MER1_type -43 146 10 439 250 27 27 chr15 24660345 24660457 -76720064 + MIR SINE MIR 39 150 -112 1620 181 0 3 chr15 24660462 24660754 -76719767 - AluJo SINE Alu -13 299 9 1940 113 3 3 chr15 24660782 24661086 -76719435 + AluSx SINE Alu 1 304 0 5476 194 43 20 chr15 24661105 24661671 -76718850 + L1MB3 LINE L1 3975 4527 -1656 2202 147 31 3 chr15 24661671 24662025 -76718496 - THE1B LTR MaLR 0 364 1 5476 194 43 20 chr15 24662025 24663608 -76716913 + L1MB3 LINE L1 4527 6176 -7 1147 181 76 24 chr15 24663682 24663931 -76716590 + AluJo SINE Alu 50 311 -1 486 285 48 5 chr15 24664597 24664783 -76715738 - L1ME3A LINE L1 -5 6165 5972 578 119 0 0 chr15 24664935 24665019 -76715502 + Alu SINE Alu 218 301 -10 811 292 144 41 chr15 24665248 24665671 -76714850 - L1MEc LINE L1 -2505 3710 3229 2253 74 10 7 chr15 24665671 24665981 -76714540 - AluY SINE Alu 0 311 1 811 292 144 41 chr15 24665981 24666043 -76714478 - L1MEc LINE L1 -2986 3229 3175 6573 83 11 7 chr15 24666066 24667389 -76713132 - L1PA10 LINE L1 0 6168 4850 376 259 36 84 chr15 24668185 24668256 -76712265 - LTR41 LTR ERVL -615 158 85 2339 80 0 10 chr15 24668256 24668559 -76711962 + AluY SINE Alu 1 325 0 186 0 40 0 chr15 24668559 24668584 -76711937 + (TAA)n Simple_repeat Simple_repeat 2 180 0 376 259 36 84 chr15 24668584 24668675 -76711846 - LTR41 LTR ERVL -688 85 1 405 39 0 0 chr15 24668800 24668851 -76711670 + (TG)n Simple_repeat Simple_repeat 2 52 0 623 308 67 27 chr15 24668966 24669310 -76711211 - L1MEc LINE L1 -3617 2598 2283 715 186 122 5 chr15 24669341 24669529 -76710992 - MLT1B LTR MaLR 0 390 181 925 91 8 0 chr15 24669557 24669678 -76710843 - AluSp/q SINE Alu -14 299 178 822 134 474 21 chr15 24669729 24669923 -76710598 - LTR12 LTR ERV1 -507 207 55 244 250 0 0 chr15 24669923 24669975 -76710546 - LTR30 LTR ERV1 -670 52 1 248 149 85 0 chr15 24670171 24670218 -76710303 + L2 LINE L2 3203 3253 -60 1992 189 36 5 chr15 24670265 24670657 -76709864 + MLT2D LTR ERVL 3 406 -8 833 242 63 62 chr15 24671527 24671765 -76708756 - MER77 LTR ERV1 -3 602 454 2586 60 0 16 chr15 24671765 24672080 -76708441 + AluY SINE Alu 1 310 -1 833 242 63 62 chr15 24672080 24672259 -76708262 - MER77 LTR ERV1 -151 454 277 320 263 94 60 chr15 24672283 24672548 -76707973 - MER21B LTR ERV1 -400 205 57 771 196 67 11 chr15 24672801 24672980 -76707541 - MER5A DNA MER1_type 0 189 1 485 227 117 19 chr15 24673775 24673929 -76706592 + MER5A DNA MER1_type 1 169 -20 22 70 0 0 chr15 24674308 24674351 -76706170 + AT_rich Low_complexity Low_complexity 1 43 0 1896 190 0 0 chr15 24674827 24675127 -76705394 + AluJb SINE Alu 1 300 -12 208 247 0 14 chr15 24675136 24675209 -76705312 + A-rich Low_complexity Low_complexity 3 74 0 1547 192 95 24 chr15 24675739 24676109 -76704412 - MSTD LTR MaLR 0 396 1 2427 105 0 0 chr15 24676755 24677060 -76703461 - AluSg SINE Alu -4 306 2 414 0 0 0 chr15 24677188 24677234 -76703287 + (TG)n Simple_repeat Simple_repeat 2 47 0 414 267 109 48 chr15 24677548 24677713 -76702808 - MER5B DNA MER1_type -1 177 3 592 231 105 31 chr15 24678934 24679262 -76701259 + L1MCc LINE L1 1354 1874 -4961 * 765 221 76 42 chr15 24679235 24679268 -76701253 + L1M4 LINE L1 5143 5173 -1768 1770 162 43 16 chr15 24679268 24679385 -76701136 + AluJb SINE Alu 1 113 -199 195 42 0 0 chr15 24679385 24679409 -76701112 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1770 162 43 16 chr15 24679409 24679594 -76700927 + AluJb SINE Alu 113 311 -1 765 221 76 42 chr15 24679594 24679890 -76700631 + L1M4 LINE L1 5173 5483 -1458 1847 154 104 82 chr15 24680006 24680363 -76700158 - MLT1C LTR MaLR -4 463 92 1909 114 81 0 chr15 24680363 24680635 -76699886 - AluSc SINE Alu -15 294 1 1847 154 104 82 chr15 24680635 24680730 -76699791 - MLT1C LTR MaLR -375 92 1 1178 164 9 27 chr15 24682874 24683099 -76697422 - MLT1A1 LTR MaLR 0 365 145 279 173 0 0 chr15 24683113 24683165 -76697356 + CT-rich Low_complexity Low_complexity 3 54 0 1998 98 0 52 chr15 24683171 24683458 -76697063 - AluSg SINE Alu -38 272 1 896 131 20 13 chr15 24683458 24683611 -76696910 - MLT1A1 LTR MaLR -209 156 3 317 295 228 25 chr15 24683621 24683858 -76696663 + L1ME4a LINE L1 5783 6067 -54 1059 153 5 20 chr15 24685441 24685644 -76694877 - MER96B DNA MER1_type? -165 252 53 990 321 115 38 chr15 24685667 24686134 -76694387 + L1 LINE L1 4048 4593 -1553 1898 152 7 7 chr15 24686134 24686430 -76694091 + AluSx SINE Alu 1 296 -16 990 321 115 38 chr15 24686430 24686695 -76693826 + L1 LINE L1 4593 4836 -1310 2353 81 0 29 chr15 24686722 24687029 -76693492 + AluSc SINE Alu 1 298 -11 351 250 13 0 chr15 24687046 24687122 -76693399 + MER81 DNA DNA 2 78 -36 437 260 169 26 chr15 24687196 24687350 -76693171 + MER5B DNA MER1_type 3 178 0 484 271 72 62 chr15 24687976 24688408 -76692113 + HAL1 LINE L1 1239 1674 -833 2512 84 0 0 chr15 24690245 24690555 -76689966 + AluY SINE Alu 2 311 0 198 279 58 0 chr15 24690583 24690669 -76689852 + L2 LINE L2 2563 2653 -661 2455 164 13 0 chr15 24690749 24691139 -76689382 - MSTD LTR MaLR 0 396 2 360 0 0 0 chr15 24693752 24693792 -76686729 + (TG)n Simple_repeat Simple_repeat 2 41 0 415 163 0 22 chr15 24694605 24694697 -76685824 + CT-rich Low_complexity Low_complexity 3 92 0 195 42 0 0 chr15 24694697 24694721 -76685800 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr15 24694831 24694853 -76685668 + GC_rich Low_complexity Low_complexity 1 22 0 3335 193 22 3 chr15 24695251 24695899 -76684622 - L1MB5 LINE L1 -1 6173 5514 232 222 0 0 chr15 24696469 24696514 -76684007 + MER53 DNA DNA 10 54 -135 610 152 32 70 chr15 24696516 24696674 -76683847 + L1MB2 LINE L1 6020 6171 0 286 231 0 0 chr15 24696675 24696740 -76683781 - MER53 DNA DNA -33 156 92 193 300 0 0 chr15 24699638 24699696 -76680825 + MIR SINE MIR 98 154 -60 2248 106 0 3 chr15 24699760 24700052 -76680469 - AluSx SINE Alu -21 291 1 3447 171 9 28 chr15 24700428 24701096 -76679425 + L1MB3 LINE L1 5528 6182 -1 1026 167 27 45 chr15 24701745 24701967 -76678554 - MER20 DNA MER1_type -1 218 1 2085 131 7 3 chr15 24704415 24704721 -76675800 + AluSc SINE Alu 1 307 -2 2491 100 0 0 chr15 24704731 24705041 -76675480 + AluSg SINE Alu 1 310 0 363 281 39 31 chr15 24706330 24706458 -76674063 - MIR SINE MIR -85 177 49 334 283 87 3 chr15 24706531 24706722 -76673799 - MIR SINE MIR -3 259 2 298 346 97 35 chr15 24708136 24708619 -76671902 - L1MC/D LINE L1 -1991 5817 5305 1659 136 99 0 chr15 24708624 24708926 -76671595 - L1MA9 LINE L1 -5 6307 5976 2061 139 0 3 chr15 24709179 24709473 -76671048 + AluSx SINE Alu 1 293 -19 273 311 89 60 chr15 24709504 24709926 -76670595 - L1MC/D LINE L1 -1101 5045 4637 2383 108 0 0 chr15 24709926 24710231 -76670290 - AluSx SINE Alu -7 305 1 273 311 89 60 chr15 24710231 24710699 -76669822 - L1MC/D LINE L1 -1509 4637 4129 2733 222 84 69 chr15 24710809 24711644 -76668877 - L1MC5 LINE L1 -112 7849 6991 2641 63 0 0 chr15 24711644 24711947 -76668574 + AluY SINE Alu 1 303 -8 2733 222 84 69 chr15 24711947 24712279 -76668242 - L1MC5 LINE L1 -970 6991 6665 1369 246 71 62 chr15 24712300 24712837 -76667684 + MLT1F LTR MaLR 1 542 0 28 29 0 0 chr15 24713216 24713251 -76667270 + AT_rich Low_complexity Low_complexity 1 35 0 364 271 89 44 chr15 24713393 24713675 -76666846 - L1MC5 LINE L1 -376 5745 5643 242 325 129 50 chr15 24714634 24715575 -76664946 + L2 LINE L2 2130 3168 -104 189 264 143 33 chr15 24715640 24715731 -76664790 + MIR SINE MIR 85 185 -77 821 206 75 33 chr15 24718446 24718660 -76661861 + MER58A DNA MER1_type 1 223 -1 652 174 35 47 chr15 24718752 24718924 -76661597 - MER3 DNA MER1_type -30 179 10 1704 181 0 28 chr15 24721178 24721499 -76659022 + AluJb SINE Alu 1 312 0 2364 70 0 7 chr15 24721546 24721847 -76658674 + AluSp SINE Alu 1 299 -14 4170 192 30 1 chr15 24723935 24724845 -76655676 - L1MA8 LINE L1 -4 6287 5352 1581 198 64 1 chr15 24725644 24726133 -76654388 - MER68 LTR ERV1 0 562 8 238 338 14 0 chr15 24726182 24726253 -76654268 + MIR SINE MIR 50 121 -141 1135 200 9 9 chr15 24727387 24727602 -76652919 + MER20 DNA MER1_type 3 217 -2 2305 96 0 6 chr15 24727618 24727932 -76652589 - AluSq SINE Alu -1 312 1 2135 109 0 13 chr15 24728873 24729175 -76651346 + AluSq SINE Alu 1 298 -15 845 209 0 23 chr15 24731202 24731374 -76649147 + AluJo SINE Alu 1 168 -144 240 152 0 0 chr15 24731376 24731422 -76649099 + Alu SINE Alu 84 129 -4 238 302 174 0 chr15 24733307 24733393 -76647128 - MIR SINE MIR -115 147 47 184 277 126 63 chr15 24733475 24733514 -76647007 + L3 LINE CR1 1298 1333 -244 500 198 27 9 chr15 24733514 24733625 -76646896 - MER81 DNA DNA 0 114 2 184 277 126 63 chr15 24733625 24733744 -76646777 + L3 LINE CR1 1333 1466 -111 212 204 23 0 chr15 24735146 24735190 -76645331 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 321 320 0 0 chr15 24735190 24735268 -76645253 - L2 LINE L2 0 3272 3195 699 294 124 8 chr15 24735744 24736108 -76644413 - MLT1J2 LTR MaLR -7 443 38 319 167 0 0 chr15 24737034 24737088 -76643433 - MIR SINE MIR -131 131 78 1417 254 58 32 chr15 24739086 24739554 -76640967 - L1MB3 LINE L1 -6 6177 5686 322 135 0 0 chr15 24739655 24739707 -76640814 + Alu SINE Alu 239 290 -12 278 224 0 33 chr15 24740972 24741155 -76639366 + (TG)n Simple_repeat Simple_repeat 1 177 0 245 242 8 0 chr15 24741174 24741302 -76639219 + (TG)n Simple_repeat Simple_repeat 1 129 0 297 239 28 0 chr15 24741320 24741429 -76639092 + (TG)n Simple_repeat Simple_repeat 1 112 0 2354 66 0 7 chr15 24742745 24743047 -76637474 + AluY SINE Alu 1 300 -11 2746 9 0 0 chr15 24745672 24746010 -76634511 + L1HS LINE L1 5815 6152 -3 353 257 48 67 chr15 24746010 24746115 -76634406 + L1MDa LINE L1 2382 2517 -4056 181 125 0 50 chr15 24752966 24753006 -76627515 + MER5A DNA MER1_type 84 121 -68 660 255 11 21 chr15 24753362 24753550 -76626971 + MER5A DNA MER1_type 4 189 0 198 0 0 0 chr15 24755092 24755114 -76625407 + (GAGAA)n Simple_repeat Simple_repeat 4 25 0 2170 109 0 7 chr15 24755463 24755766 -76624755 - AluSx SINE Alu -11 301 1 1060 147 11 16 chr15 24755869 24756053 -76624468 - FRAM SINE Alu -1 175 1 343 202 12 36 chr15 24758175 24758259 -76622262 + L1MC/D LINE L1 5680 5761 -2047 232 294 24 8 chr15 24758389 24758515 -76622006 + (CACCC)n Simple_repeat Simple_repeat 3 130 0 279 283 81 30 chr15 24760201 24760300 -76620221 + MER5A DNA MER1_type 84 187 -2 212 214 18 36 chr15 24760364 24760420 -76620101 + L2 LINE L2 1861 1915 -1399 222 236 28 66 chr15 24760754 24760860 -76619661 + L2 LINE L2 2889 2990 -282 948 178 6 0 chr15 24762100 24762274 -76618247 - L1PA12 LINE L1 -4509 3072 2898 383 235 130 9 chr15 24762427 24762542 -76617979 - MIR SINE MIR -17 245 117 238 336 26 18 chr15 24762979 24763092 -76617429 + MIR SINE MIR 109 222 -40 2070 115 0 38 chr15 24764407 24764721 -76615800 + AluSx SINE Alu 1 302 -10 509 227 84 45 chr15 24764795 24764949 -76615572 - MER103 DNA DNA -2 164 5 825 194 0 0 chr15 24765400 24765580 -76614941 + (TG)n Simple_repeat Simple_repeat 1 180 0 180 279 162 0 chr15 24767089 24767157 -76613364 + L2 LINE L2 3184 3262 -10 817 176 80 75 chr15 24771150 24771301 -76609220 + L1MC5 LINE L1 3400 3549 -2597 1851 160 3 7 chr15 24771301 24771607 -76608914 + AluJo SINE Alu 1 305 -7 1922 122 7 53 chr15 24771612 24771916 -76608605 + AluSx SINE Alu 1 290 -22 817 176 80 75 chr15 24771916 24771997 -76608524 + L1MC5 LINE L1 3552 3639 -2507 2127 184 57 27 chr15 24771999 24772195 -76608326 + L1MC5 LINE L1 3770 3959 -2187 2611 62 0 3 chr15 24772195 24772500 -76608021 + AluY SINE Alu 1 304 -7 2127 184 57 27 chr15 24772500 24772781 -76607740 + L1MC5 LINE L1 3959 4261 -1885 3778 158 6 39 chr15 24773884 24774608 -76605913 - L1MD1 LINE L1 -3 6239 5540 1541 86 5 32 chr15 24774943 24775163 -76605358 - AluSg/x SINE Alu -12 300 87 4134 133 329 104 chr15 24775594 24776976 -76603545 - pTR5 LTR ERV1 -1 2437 745 2272 108 10 0 chr15 24776976 24777272 -76603249 + AluSx SINE Alu 10 308 -4 618 224 54 136 chr15 24777597 24777950 -76602571 - L1M4 LINE L1 -1768 4378 4055 2647 62 0 0 chr15 24778565 24778874 -76601647 + AluY SINE Alu 1 309 -2 1761 242 114 23 chr15 24778876 24779447 -76601074 - L1MEc LINE L1 -5731 665 43 701 129 20 0 chr15 24779743 24779868 -76600653 - AluSg/x SINE Alu 0 307 181 1397 183 40 5 chr15 24779968 24780379 -76600142 + L1MC5 LINE L1 5093 5526 -648 484 133 78 0 chr15 24780375 24780465 -76600056 + L1M4 LINE L1 5430 5526 -648 * 3713 173 36 7 chr15 24780465 24781184 -76599337 + L1MB8 LINE L1 5430 6173 -5 1146 175 0 28 chr15 24781238 24781449 -76599072 + MER2 DNA MER2_type 6 210 -135 2246 93 20 7 chr15 24781739 24782041 -76598480 - AluSx SINE Alu -6 306 1 333 266 21 50 chr15 24782981 24783122 -76597399 - MIR SINE MIR -39 169 32 223 119 30 30 chr15 24783764 24783831 -76596690 + (CAGAGA)n Simple_repeat Simple_repeat 2 68 0 2217 84 3 3 chr15 24784091 24784433 -76596088 + AluSp SINE Alu 1 342 0 342 235 67 67 chr15 24784433 24784612 -76595909 + L1MC5 LINE L1 5774 5952 -1856 4034 128 44 39 chr15 24785122 24785446 -76595075 - L1PA16 LINE L1 -5 6161 5840 2494 74 0 0 chr15 24785446 24785745 -76594776 - AluY SINE Alu -12 299 1 4034 128 44 39 chr15 24785745 24786145 -76594376 - L1PA16 LINE L1 -326 5840 5433 828 204 95 36 chr15 24786201 24786505 -76594016 + L1MC5 LINE L1 6640 6961 -1000 246 32 0 0 chr15 24786590 24786621 -76593900 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2109 87 45 0 chr15 24786622 24786888 -76593633 - AluSg SINE Alu -32 278 1 1095 166 73 106 chr15 24786906 24787274 -76593247 - LTR37A LTR ERV1 -52 374 19 261 0 0 0 chr15 24787274 24787303 -76593218 + (T)n Simple_repeat Simple_repeat 1 29 0 262 333 21 0 chr15 24787375 24787471 -76593050 - MER31-int LTR ERV1 -735 4201 4104 2341 84 0 10 chr15 24787814 24788110 -76592411 - AluSg SINE Alu -15 295 3 1770 154 14 17 chr15 24790237 24790529 -76589992 + AluJb SINE Alu 21 311 -1 1036 220 130 43 chr15 24790667 24791013 -76589508 + MER92A LTR ERV1 37 412 0 2567 40 0 17 chr15 24791789 24792091 -76588430 - AluY SINE Alu -14 297 1 331 213 58 85 chr15 24792542 24792590 -76587931 + L1M4 LINE L1 2787 2835 -3311 2373 78 7 0 chr15 24792590 24792913 -76587608 + AluSx SINE Alu 1 325 0 331 213 58 85 chr15 24792913 24793050 -76587471 + L1M4 LINE L1 2835 2969 -3177 3760 226 70 8 chr15 24793280 24794257 -76586264 + L1PB1 LINE L1 6 1042 -5821 349 161 16 0 chr15 24794265 24794327 -76586194 + L1PB1 LINE L1 1094 1156 -5707 15296 188 15 8 chr15 24794332 24799811 -76580710 + L1PB1 LINE L1 1311 6866 -1 937 266 202 12 chr15 24800991 24801502 -76579019 + L1M4 LINE L1 3709 4316 -1830 2015 84 0 4 chr15 24801502 24801752 -76578769 + AluY SINE Alu 1 249 -62 255 31 0 0 chr15 24801905 24801937 -76578584 + (TG)n Simple_repeat Simple_repeat 1 32 0 825 171 39 54 chr15 24801990 24802173 -76578348 + MLT1A1 LTR MaLR 164 345 -20 1773 175 63 29 chr15 24802173 24802556 -76577965 - MSTD LTR MaLR 0 396 1 825 171 39 54 chr15 24802556 24802577 -76577944 + MLT1A1 LTR MaLR 345 365 0 2299 61 0 7 chr15 24805731 24806009 -76574512 + AluY SINE Alu 1 276 -35 215 91 0 23 chr15 24806009 24806053 -76574468 + (CAAAA)n Simple_repeat Simple_repeat 4 46 0 226 274 0 53 chr15 24806665 24806760 -76573761 - L1ME3A LINE L1 0 6170 6081 1488 259 61 13 chr15 24806891 24807369 -76573152 - L1ME3A LINE L1 -202 5968 5468 774 275 100 20 chr15 24807371 24807720 -76572801 + HAL1 LINE L1 1688 2064 -443 6000 239 67 32 chr15 24807738 24808278 -76572243 - L1ME3A LINE L1 -896 5250 4730 2132 119 3 0 chr15 24808278 24808564 -76571957 - AluSx SINE Alu -20 292 6 6000 239 67 32 chr15 24808564 24808652 -76571869 - L1ME3A LINE L1 -1416 4730 4647 2121 114 0 26 chr15 24808652 24808959 -76571562 - AluSq SINE Alu -14 299 1 6000 239 67 32 chr15 24808959 24810433 -76570088 - L1ME3A LINE L1 -1499 4647 3073 6374 84 10 18 chr15 24810440 24811214 -76569307 - L1PA8 LINE L1 0 6291 5528 2351 92 0 0 chr15 24811214 24811517 -76569004 + AluY SINE Alu 1 303 -8 6374 84 10 18 chr15 24811517 24811694 -76568827 - L1PA8 LINE L1 -763 5528 5351 819 133 63 0 chr15 24811672 24811830 -76568691 - L1MA7 LINE L1 -115 6176 6009 * 222 186 17 51 chr15 24812665 24812724 -76567797 + MIR SINE MIR 74 130 -78 5301 165 22 6 chr15 24812896 24813909 -76566612 - L1MB3 LINE L1 -1 6182 5150 243 176 44 59 chr15 24813998 24814066 -76566455 + MER96B DNA MER1_type? 109 175 0 1965 144 44 18 chr15 24814170 24814511 -76566010 - MLT1A1 LTR MaLR -15 350 1 1339 205 28 37 chr15 24814567 24814925 -76565596 + L1MB8 LINE L1 5825 6178 0 1487 176 89 110 chr15 24815350 24815787 -76564734 - LTR12 LTR ERV1 -234 480 53 233 235 0 0 chr15 24815787 24815838 -76564683 - LTR30 LTR ERV1 -670 52 2 359 303 118 11 chr15 24816188 24816366 -76564155 - MER117 DNA MER1_type 0 197 1 1213 245 109 75 chr15 24816657 24817269 -76563252 + L1ME3A LINE L1 5514 6146 -24 2098 137 0 0 chr15 24817315 24817622 -76562899 + AluSx SINE Alu 3 309 -3 1931 218 70 23 chr15 24818087 24818458 -76562063 + MER74B LTR ERVL 66 471 -151 2261 120 15 29 chr15 24818458 24818800 -76561721 + MER1B DNA MER1_type 1 337 0 1931 218 70 23 chr15 24818800 24818960 -76561561 + MER74B LTR ERVL 471 622 0 5931 213 5 9 chr15 24819561 24820864 -76559657 - L1 LINE L1 -1983 4163 2866 6945 42 1 2 chr15 24820864 24821716 -76558805 - L1P LINE L1 -973 5173 4323 372 255 140 32 chr15 24822235 24822259 -76558262 + L2 LINE L2 3099 3119 -153 2279 122 0 0 chr15 24822259 24822571 -76557950 - AluSx SINE Alu 0 312 1 372 255 140 32 chr15 24822571 24822703 -76557818 + L2 LINE L2 3119 3272 0 3081 54 8 3 chr15 24823241 24823611 -76556910 - L1PA8 LINE L1 -1 6171 5800 3096 206 93 18 chr15 24823629 24824390 -76556131 + MER21B LTR ERV1 20 837 -26 1896 127 22 0 chr15 24826637 24826912 -76553609 + AluJb SINE Alu 6 286 -26 683 260 142 31 chr15 24826928 24827216 -76553305 - MLT1I LTR MaLR -89 320 1 305 252 63 47 chr15 24827217 24827344 -76553177 + HAL1b LINE L1 386 514 -834 381 237 89 35 chr15 24827388 24827557 -76552964 + L1MCc LINE L1 25 202 -6221 564 247 17 23 chr15 24827590 24827764 -76552757 + L1MCc LINE L1 1469 1641 -5300 * 1294 236 73 45 chr15 24827762 24828144 -76552377 + L1M4 LINE L1 3791 4183 -1963 2900 155 37 41 chr15 24828146 24828688 -76551833 + MLT2B3 LTR ERVL 1 540 -14 1291 245 91 10 chr15 24828689 24829182 -76551339 + L1M4 LINE L1 4185 4717 -1429 2281 96 3 0 chr15 24830527 24830820 -76549701 - AluSx SINE Alu -18 294 1 21 36 0 0 chr15 24830944 24830972 -76549549 + AT_rich Low_complexity Low_complexity 1 28 0 231 356 0 29 chr15 24831000 24831104 -76549417 + L3b LINE CR1 1397 1497 -86 205 353 52 0 chr15 24831891 24832027 -76548494 + L2 LINE L2 2917 3059 -213 1755 148 3 25 chr15 24832355 24832638 -76547883 + AluJo SINE Alu 29 305 -7 1358 224 22 102 chr15 24832638 24833128 -76547393 + L1MB8 LINE L1 3482 3932 -2214 1151 215 87 8 chr15 24833137 24833504 -76547017 - L1M4 LINE L1 -816 5330 4935 * 3747 172 38 57 chr15 24833501 24833772 -76546749 + L1MB8 LINE L1 5368 5643 -535 330 109 0 0 chr15 24833772 24833818 -76546703 - MADE1 DNA Mariner 0 80 35 3747 172 38 57 chr15 24833818 24834302 -76546219 + L1MB8 LINE L1 5643 6152 -26 2133 111 3 14 chr15 24834314 24834611 -76545910 + AluY SINE Alu 1 294 -17 2160 104 60 11 chr15 24834611 24834958 -76545563 - MSTA LTR MaLR -64 364 1 236 250 31 0 chr15 24835007 24835071 -76545450 + MER63 DNA MER1_type 996 1061 0 1540 174 141 52 chr15 24835992 24836045 -76544476 + MSTD LTR MaLR 1 48 -348 2387 87 3 3 chr15 24836045 24836357 -76544164 + AluSx SINE Alu 1 312 0 1540 174 141 52 chr15 24836357 24836665 -76543856 + MSTD LTR MaLR 48 394 -2 267 306 20 10 chr15 24836757 24836855 -76543666 + MIR SINE MIR 156 254 -8 215 31 31 0 chr15 24836859 24836891 -76543630 + (CAT)n Simple_repeat Simple_repeat 1 33 0 208 226 38 0 chr15 24837361 24837414 -76543107 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 1431 170 4 61 chr15 24837743 24838020 -76542501 + AluJo SINE Alu 29 289 -23 1575 162 26 26 chr15 24838023 24838332 -76542189 - AluSx SINE Alu -3 309 1 291 225 0 42 chr15 24839570 24839641 -76540880 - L1MB8 LINE L1 -168 6010 5943 635 312 119 29 chr15 24839663 24840353 -76540168 + L1MC4a LINE L1 3341 4092 -2054 21 0 0 0 chr15 24841300 24841321 -76539200 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr15 24841567 24841596 -76538925 + AT_rich Low_complexity Low_complexity 1 29 0 574 271 78 53 chr15 24841598 24841919 -76538602 + L1MC4a LINE L1 5291 5619 -2189 232 213 53 53 chr15 24841971 24842046 -76538475 + L2 LINE L2 3231 3305 -8 350 248 41 92 chr15 24842046 24842076 -76538445 + L1MC4a LINE L1 5675 5705 -2103 2023 127 13 13 chr15 24842076 24842376 -76538145 + AluJb SINE Alu 4 303 -9 2286 79 0 26 chr15 24842376 24842680 -76537841 + AluSq SINE Alu 1 296 -17 350 248 41 92 chr15 24842680 24842866 -76537655 + L1MC4a LINE L1 5703 5881 -1927 411 21 0 0 chr15 24842939 24842987 -76537534 + (CA)n Simple_repeat Simple_repeat 1 48 0 301 326 10 77 chr15 24843149 24843554 -76536967 + L1ME4a LINE L1 4456 4833 -1313 335 256 114 31 chr15 24844301 24844555 -76535966 + L1ME4a LINE L1 5119 5393 -753 613 261 84 28 chr15 24844611 24844860 -76535661 + L1ME4a LINE L1 5381 5643 -478 343 221 111 142 chr15 24844904 24845008 -76535513 + L1ME4a LINE L1 5741 5847 -274 2005 122 49 0 chr15 24845008 24845295 -76535226 + AluSx SINE Alu 1 301 -11 343 221 111 142 chr15 24845295 24845570 -76534951 + L1ME4a LINE L1 5847 6108 -13 2126 183 38 19 chr15 24845672 24846092 -76534429 - MSTA LTR MaLR 0 428 1 329 306 30 22 chr15 24846092 24846226 -76534295 - MIR3 SINE MIR -71 137 3 1524 102 69 5 chr15 24847399 24847615 -76532906 - MER30 DNA MER1_type 0 230 1 1330 72 17 17 chr15 24847649 24847830 -76532691 - MER30 DNA MER1_type -49 181 1 1424 223 113 46 chr15 24848807 24849390 -76531131 - L1MC5 LINE L1 -28 7933 7312 2289 83 17 0 chr15 24849419 24849708 -76530813 - AluSc SINE Alu -15 294 1 863 210 48 35 chr15 24849721 24849950 -76530571 - L1MC5 LINE L1 -722 7239 7008 1119 166 73 106 chr15 24850143 24850511 -76530010 + LTR37A LTR ERV1 19 374 -52 2089 87 45 0 chr15 24850529 24850795 -76529726 + AluSg SINE Alu 1 278 -32 213 65 0 0 chr15 24850796 24850827 -76529694 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 838 204 95 36 chr15 24850911 24851215 -76529306 - L1MC5 LINE L1 -1000 6961 6640 2908 127 23 21 chr15 24851271 24851742 -76528779 + L1PA14 LINE L1 5433 5904 -257 2356 76 3 0 chr15 24852689 24852979 -76527542 - AluY SINE Alu -17 294 4 2238 191 6 0 chr15 24853750 24854111 -76526410 + MLT1A1 LTR MaLR 3 365 0 2596 113 28 35 chr15 24855591 24855958 -76524563 - L1PA15 LINE L1 -14 6151 5786 2221 120 0 7 chr15 24855958 24856267 -76524254 - AluSx SINE Alu -5 307 1 2596 113 28 35 chr15 24856267 24856298 -76524223 - L1PA15 LINE L1 -379 5786 5756 1216 244 13 0 chr15 24856300 24856607 -76523914 + L1P LINE L1 2562 2872 -3274 5913 210 8 11 chr15 24856790 24858092 -76522429 - L1 LINE L1 -1983 4879 3582 7893 37 2 0 chr15 24858092 24859042 -76521479 - L1PA5 LINE L1 -973 5173 4222 7842 38 7 0 chr15 24859042 24860022 -76520499 + L1PA5 LINE L1 5169 6154 0 4831 139 51 38 chr15 24860036 24860506 -76520015 - L1PBa LINE L1 -3267 3595 3133 3362 75 49 5 chr15 24860506 24860890 -76519631 + MLT2A1 LTR ERVL 1 407 -37 221 0 35 0 chr15 24860890 24860919 -76519602 + (TA)n Simple_repeat Simple_repeat 2 31 0 3362 75 49 5 chr15 24860919 24860959 -76519562 + MLT2A1 LTR ERVL 407 444 0 4831 139 51 38 chr15 24860959 24861945 -76518576 - L1PBa LINE L1 -3729 3133 2132 300 172 65 32 chr15 24862051 24862144 -76518377 - L1ME4a LINE L1 -1 6120 6025 231 36 0 0 chr15 24862175 24862203 -76518318 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 3976 66 15 11 chr15 24862203 24862733 -76517788 - LTR6B LTR ERV1 -26 532 1 4150 167 79 4 chr15 24862733 24863662 -76516859 - L1PBa LINE L1 -4728 2135 990 * 6034 147 11 11 chr15 24863657 24864932 -76515589 + L1PB1 LINE L1 4511 5793 -358 489 17 0 0 chr15 24864932 24864990 -76515531 + (TA)n Simple_repeat Simple_repeat 2 59 0 6034 147 11 11 chr15 24864990 24865349 -76515172 + L1PB1 LINE L1 5793 6150 -1 2392 88 0 0 chr15 24866530 24866824 -76513697 - AluSg SINE Alu -15 295 2 240 241 0 0 chr15 24867167 24867225 -76513296 + L1MB4 LINE L1 5688 5745 -2063 3994 90 43 2 chr15 24867327 24867859 -76512662 + MER41A LTR ERV1 1 554 0 4387 127 97 35 chr15 24869316 24870637 -76509884 - pTR5 LTR ERV1 0 2438 743 1947 144 6 41 chr15 24873318 24873376 -76507145 + L1MB4 LINE L1 5852 5911 -269 2257 91 37 0 chr15 24873376 24873674 -76506847 + AluSg SINE Alu 2 310 0 1947 144 6 41 chr15 24873674 24873956 -76506565 + L1MB4 LINE L1 5911 6180 0 26 0 0 0 chr15 24874285 24874311 -76506210 + AT_rich Low_complexity Low_complexity 1 26 0 987 315 120 42 chr15 24874699 24875667 -76504854 + L2 LINE L2 1705 2747 -567 900 333 53 5 chr15 24875885 24876350 -76504171 - L2 LINE L2 -189 3083 2590 367 279 83 59 chr15 24876582 24876786 -76503735 + L2 LINE L2 2287 2495 -819 2251 107 3 3 chr15 24877205 24877515 -76503006 - AluSx SINE Alu -2 310 1 1707 122 52 38 chr15 24877822 24877989 -76502532 - AluJo SINE Alu -21 291 117 234 0 0 0 chr15 24877989 24878015 -76502506 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1707 122 52 38 chr15 24878015 24878134 -76502387 - AluJo SINE Alu -195 117 1 3220 233 40 55 chr15 24880765 24881008 -76499513 + L1MB8 LINE L1 2839 3084 -3062 2259 109 0 0 chr15 24881008 24881312 -76499209 + AluSg1 SINE Alu 1 304 -5 3220 233 40 55 chr15 24881312 24881688 -76498833 + L1MB8 LINE L1 3084 3464 -2682 1920 154 3 22 chr15 24881688 24881999 -76498522 + AluJo SINE Alu 1 305 -7 3220 233 40 55 chr15 24881999 24882489 -76498032 + L1MB8 LINE L1 3464 3932 -2214 1151 215 87 8 chr15 24882498 24882865 -76497656 - L1M4 LINE L1 -816 5330 4935 * 3747 172 38 57 chr15 24882862 24883133 -76497388 + L1MB8 LINE L1 5368 5643 -535 330 109 0 0 chr15 24883133 24883179 -76497342 - MADE1 DNA Mariner 0 80 35 3747 172 38 57 chr15 24883179 24883663 -76496858 + L1MB8 LINE L1 5643 6152 -26 2167 116 0 13 chr15 24883675 24883978 -76496543 + AluY SINE Alu 1 299 -12 232 115 77 0 chr15 24883978 24884030 -76496491 - MER44D DNA MER2_type -123 582 527 * 3971 123 15 2 chr15 24884026 24884682 -76495839 + MER72 LTR ERV1 9 722 0 547 134 229 0 chr15 24884682 24884811 -76495710 - MER44D DNA MER2_type -167 438 10 4184 45 16 10 chr15 24885309 24885796 -76494725 - LTR2B LTR ERV1 0 490 1 26 50 0 0 chr15 24887663 24887703 -76492818 + GC_rich Low_complexity Low_complexity 1 40 0 30 27 0 0 chr15 24888763 24888800 -76491721 + AT_rich Low_complexity Low_complexity 1 37 0 325 314 38 0 chr15 24889242 24889347 -76491174 + MIR SINE MIR 35 143 -119 362 274 89 45 chr15 24889607 24889786 -76490735 + MIR SINE MIR 9 195 -67 411 264 139 79 chr15 24890504 24891054 -76489467 - L1ME2 LINE L1 -235 5929 5306 327 262 131 45 chr15 24891200 24891421 -76489100 - L1ME2 LINE L1 -1039 5107 4868 2315 104 0 0 chr15 24891515 24891814 -76488707 - AluSq SINE Alu -14 299 1 304 239 68 118 chr15 24891840 24892179 -76488342 - L1ME2 LINE L1 -1956 4190 3869 260 207 0 17 chr15 24892383 24892441 -76488080 - L1MC4 LINE L1 -2 8040 7984 1477 211 61 8 chr15 24892454 24892814 -76487707 - L1MC4 LINE L1 -399 7643 7265 1460 227 87 48 chr15 24892811 24893003 -76487518 - L1MC4a LINE L1 -830 6978 6795 * 2397 66 13 3 chr15 24893003 24893305 -76487216 - AluY SINE Alu -2 309 5 1460 227 87 48 chr15 24893305 24893637 -76486884 - L1MC4a LINE L1 -1013 6795 6439 237 271 171 11 chr15 24893859 24894128 -76486393 - L1ME2 LINE L1 -2499 3647 3336 4583 152 66 15 chr15 24894152 24894954 -76485567 - MER21A LTR ERV1 -2 929 87 594 241 123 44 chr15 24895101 24895644 -76484877 - L1ME2 LINE L1 -2884 3262 2677 515 257 7 29 chr15 24895655 24895791 -76484730 - FLAM_A SINE Alu 0 133 1 1394 175 8 16 chr15 24895806 24896058 -76484463 - AluJo SINE Alu -24 288 39 378 265 123 24 chr15 24896403 24896614 -76483907 - L1MC5 LINE L1 -29 7932 7701 1253 214 47 126 chr15 24896618 24897188 -76483333 - L1M4 LINE L1 -2213 4431 3907 814 181 0 0 chr15 24897188 24897326 -76483195 - MER67A LTR ERV1 0 543 406 204 40 0 0 chr15 24897365 24897390 -76483131 + (TA)n Simple_repeat Simple_repeat 2 26 0 782 150 0 0 chr15 24897391 24897504 -76483017 - AluJb SINE Alu -199 113 1 1770 147 24 53 chr15 24897506 24897847 -76482674 - MER67A LTR ERV1 -127 416 86 772 256 13 34 chr15 24897874 24898108 -76482413 - L1M4 LINE L1 -5485 1057 829 238 254 34 0 chr15 24898140 24898199 -76482322 - L1M4 LINE L1 -6409 133 73 2344 152 2 25 chr15 24898240 24898642 -76481879 + L1MB3 LINE L1 5791 6183 0 229 82 20 61 chr15 24898650 24898699 -76481822 + L1MB3 LINE L1 6137 6183 0 2389 84 0 10 chr15 24898961 24899271 -76481250 - AluSg SINE Alu -2 308 2 1292 246 32 61 chr15 24899567 24899829 -76480692 + L1MC4a LINE L1 5523 5770 -2038 2215 88 3 0 chr15 24899829 24900159 -76480362 + AluSp SINE Alu 1 331 0 1292 246 32 61 chr15 24900159 24900337 -76480184 + L1MC4a LINE L1 5770 5952 -1856 1723 161 65 6 chr15 24900847 24901170 -76479351 - L1PA16 LINE L1 -5 6161 5820 1869 152 10 7 chr15 24901171 24901468 -76479053 - AluJb SINE Alu -14 298 1 222 171 0 0 chr15 24901541 24901582 -76478939 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 1378 164 72 34 chr15 24901583 24901846 -76478675 - Tigger3(Golem) DNA MER2_type -1 3028 2756 432 199 175 30 chr15 24901867 24902033 -76478488 - L2 LINE L2 -250 3063 2874 258 329 0 0 chr15 24902034 24902110 -76478411 - Tigger3(Golem) DNA MER2_type -2953 76 1 1153 305 74 6 chr15 24902190 24902840 -76477681 - L1 LINE L1 -1033 5113 4415 487 289 61 56 chr15 24902885 24903065 -76477456 - MLT1H1 LTR MaLR 0 555 377 1019 266 61 66 chr15 24903065 24903624 -76476897 - LTR38 LTR ERV1 0 556 1 487 289 61 56 chr15 24903624 24903989 -76476532 - MLT1H1 LTR MaLR -178 377 1 1929 284 77 24 chr15 24903996 24904978 -76475543 - L1 LINE L1 -1782 4364 3331 440 286 132 5 chr15 24905106 24905295 -76475226 - LTR50 LTR ERVL -582 213 1 1892 114 4 0 chr15 24905809 24906072 -76474449 - AluSx SINE Alu -2 310 47 628 280 88 18 chr15 24906282 24906611 -76473910 + L1ME3A LINE L1 5614 5965 -199 231 274 0 53 chr15 24906746 24906841 -76473680 + L1ME3A LINE L1 6081 6170 0 376 331 20 0 chr15 24906921 24907072 -76473449 + L1ME LINE L1 5479 5632 -538 287 283 18 26 chr15 24907157 24907270 -76473251 - MLT1H LTR MaLR -311 238 127 2337 102 0 0 chr15 24907632 24907926 -76472595 - AluSg SINE Alu -15 295 2 1991 170 50 31 chr15 24907951 24908493 -76472028 + MLT2A2 LTR ERVL 1 554 0 719 181 0 0 chr15 24908493 24908609 -76471912 + MER44D DNA MER2_type 489 604 -1 647 289 41 18 chr15 24908624 24908842 -76471679 - MIR SINE MIR -32 230 8 197 77 0 0 chr15 24909010 24909036 -76471485 + L2 LINE L2 3207 3232 -40 2020 210 109 16 chr15 24909117 24909613 -76470908 - MER34 LTR ERV1 0 542 1 533 281 141 19 chr15 24910964 24911234 -76469287 + MLT1K LTR MaLR 282 584 -4 2229 110 7 0 chr15 24911489 24911788 -76468733 + AluSx SINE Alu 1 301 -11 499 140 11 43 chr15 24911864 24911957 -76468564 - MER1B DNA MER1_type 0 339 250 * 1228 133 16 0 chr15 24911954 24912142 -76468379 - MER1B DNA MER1_type -106 191 1 303 306 83 0 chr15 24912377 24912485 -76468036 + HAL1b LINE L1 83 199 -1149 326 299 0 0 chr15 24913140 24913237 -76467284 - L1M4 LINE L1 -1258 4888 4792 1013 227 45 39 chr15 24913237 24913567 -76466954 - MLT1B LTR MaLR 0 390 59 1181 164 82 39 chr15 24913920 24914152 -76466369 + Tigger3(Golem) DNA MER2_type 2786 3027 -2 222 171 0 0 chr15 24914153 24914194 -76466327 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 1935 151 10 6 chr15 24914267 24914578 -76465943 + AluJb SINE Alu 1 312 0 1524 234 75 26 chr15 24914606 24914910 -76465611 + L1ME3 LINE L1 5346 5685 -477 2244 102 0 0 chr15 24914910 24915193 -76465328 + AluSx SINE Alu 6 288 -24 1524 234 75 26 chr15 24915193 24915379 -76465142 + L1ME3 LINE L1 5685 5860 -302 999 271 106 31 chr15 24915446 24915997 -76464524 + L2 LINE L2 2718 3310 -3 241 225 69 106 chr15 24916101 24916261 -76464260 - HAL1 LINE L1 -1814 693 540 521 286 77 46 chr15 24916305 24916630 -76463891 + MLT1I LTR MaLR 68 402 -7 471 333 48 33 chr15 24916704 24917101 -76463420 - HAL1 LINE L1 -2057 450 48 294 179 0 0 chr15 24917598 24917654 -76462867 + CT-rich Low_complexity Low_complexity 3 58 0 264 59 0 0 chr15 24917679 24917713 -76462808 + (TTCC)n Simple_repeat Simple_repeat 2 35 0 2190 123 10 0 chr15 24917713 24918021 -76462500 - AluSq SINE Alu -1 312 2 360 235 0 0 chr15 24918532 24918600 -76461921 - MLT1K LTR MaLR -15 573 506 2389 44 14 30 chr15 24918600 24918897 -76461624 - AluY SINE Alu -19 292 1 2389 196 97 6 chr15 24920791 24921295 -76459226 - MER44D DNA MER2_type 0 605 1 1168 171 96 32 chr15 24921317 24921568 -76458953 + MLT2D LTR ERVL 146 412 -2 488 215 114 7 chr15 24921572 24921721 -76458800 - L2 LINE L2 -697 2617 2453 458 112 2 17 chr15 24922040 24922113 -76458408 - MLT1C LTR MaLR 0 467 406 442 241 0 11 chr15 24922207 24922294 -76458227 + MER58 DNA MER1_type 5 90 -125 385 285 10 57 chr15 24922358 24922551 -76457970 + L1MEc LINE L1 638 821 -5575 267 267 70 64 chr15 24922629 24922801 -76457720 + L1MC5 LINE L1 6876 7048 -913 989 232 89 36 chr15 24922820 24923212 -76457309 + L1MC5 LINE L1 7112 7524 -437 2105 265 85 21 chr15 24923292 24924314 -76456207 + L1M4 LINE L1 2670 3756 -2390 286 250 40 0 chr15 24924567 24924643 -76455878 - MLT1B LTR MaLR 0 530 452 548 212 147 41 chr15 24924891 24925136 -76455385 - MLT1B LTR MaLR -118 272 2 924 218 28 40 chr15 24925157 24925322 -76455199 - L1M4 LINE L1 -1373 4773 4611 2426 75 0 0 chr15 24925322 24925614 -76454907 - AluSc SINE Alu -17 292 1 924 218 28 40 chr15 24925614 24925700 -76454821 - L1M4 LINE L1 -1535 4611 4525 789 283 78 44 chr15 24927297 24927707 -76452814 + MLT1L LTR MaLR 184 607 -8 2229 127 51 25 chr15 24928051 24928406 -76452115 + THE1B LTR MaLR 1 364 0 452 169 0 0 chr15 24929296 24929367 -76451154 - AluJ/FRAM SINE Alu -10 302 232 1842 124 0 11 chr15 24929391 24929657 -76450864 - AluSq SINE Alu -50 263 1 1355 212 49 61 chr15 24930159 24930550 -76449971 + MLT1B LTR MaLR 1 386 -4 1536 116 19 0 chr15 24930784 24930999 -76449522 + AluSg/x SINE Alu 83 301 -11 923 192 72 5 chr15 24931315 24931523 -76448998 + MER34 LTR ERV1 1 222 -320 1096 171 35 0 chr15 24931585 24931784 -76448737 + MER34 LTR ERV1 337 542 0 2125 117 0 32 chr15 24932105 24932413 -76448108 + AluSx SINE Alu 1 298 -14 2027 132 0 17 chr15 24934017 24934313 -76446208 + AluSx SINE Alu 1 291 -21 702 246 116 78 chr15 24934473 24934996 -76445525 + L1M4 LINE L1 3796 4297 -1849 14937 125 46 4 chr15 24934996 24937317 -76443204 + Tigger1 DNA MER2_type 2 2418 0 702 246 116 78 chr15 24937317 24937378 -76443143 + L1M4 LINE L1 4297 4354 -1792 2205 115 3 0 chr15 24937378 24937674 -76442847 + AluSx SINE Alu 1 297 -15 702 246 116 78 chr15 24937674 24938391 -76442130 + L1M4 LINE L1 4354 5214 -932 23 68 0 0 chr15 24938714 24938758 -76441763 + AT_rich Low_complexity Low_complexity 1 44 0 564 226 56 78 chr15 24939020 24939326 -76441195 + L1MC5 LINE L1 7610 7908 -53 875 258 113 19 chr15 24939656 24940178 -76440343 + L2 LINE L2 2744 3313 0 1671 287 123 21 chr15 24940302 24941101 -76439420 - L2 LINE L2 -543 2771 1892 500 117 0 0 chr15 24941668 24941745 -76438776 - AluJ/FRAM SINE Alu -4 308 232 1916 105 8 4 chr15 24941769 24942027 -76438494 - AluSq SINE Alu -50 263 5 1718 158 54 3 chr15 24942031 24942366 -76438155 - L1MB3 LINE L1 -40 6143 5792 933 181 0 18 chr15 24943272 24943438 -76437083 + Tigger1 DNA MER2_type 1 163 -2255 * 1100 167 0 77 chr15 24943419 24943467 -76437054 + Tigger1 DNA MER2_type 2202 2252 -166 2577 62 0 0 chr15 24943467 24943772 -76436749 - AluY SINE Alu -6 305 1 1100 167 0 77 chr15 24943772 24943957 -76436564 + Tigger1 DNA MER2_type 2252 2417 -1 1163 265 77 20 chr15 24944723 24945188 -76435333 + L1MC3 LINE L1 1 839 -5583 9450 166 104 77 chr15 24945206 24946520 -76434001 + L1MC3 LINE L1 877 2155 -6425 2272 101 0 7 chr15 24946520 24946826 -76433695 + AluSg SINE Alu 1 304 -6 9450 166 104 77 chr15 24946826 24946922 -76433599 + L1MC3 LINE L1 2155 2247 -6333 1664 80 9 0 chr15 24946922 24947146 -76433375 + L1PA10 LINE L1 5939 6164 -4 9450 166 104 77 chr15 24947146 24947300 -76433221 + L1MC3 LINE L1 2247 2395 -6185 1480 166 50 0 chr15 24947300 24947583 -76432938 - L1MA8 LINE L1 -4 6287 5991 9450 166 104 77 chr15 24947583 24947636 -76432885 + L1MC3 LINE L1 2395 2445 -6135 2637 161 11 25 chr15 24947636 24948107 -76432414 + MER4C LTR ERV1 1 464 -1 9450 166 104 77 chr15 24948107 24948223 -76432298 + L1MC3 LINE L1 2445 2556 -6024 3570 181 106 16 chr15 24948223 24949014 -76431507 + MER21B LTR ERV1 1 862 -1 9450 166 104 77 chr15 24949014 24949259 -76431262 + L1MC3 LINE L1 2556 2793 -5787 1366 201 73 4 chr15 24949259 24949533 -76430988 - AluJo SINE Alu -19 293 1 9450 166 104 77 chr15 24949533 24952459 -76428062 + L1MC3 LINE L1 2793 5640 -2940 2305 82 0 20 chr15 24952459 24952764 -76427757 + AluY SINE Alu 1 299 -12 9450 166 104 77 chr15 24952764 24954048 -76426473 + L1MC3 LINE L1 5640 6888 -1692 1123 179 159 14 chr15 24954048 24954234 -76426287 - MER44D DNA MER2_type -1882 609 451 2455 70 0 3 chr15 24954234 24954532 -76425989 + AluY SINE Alu 1 297 -14 1123 179 159 14 chr15 24954532 24954641 -76425880 - MER44D DNA MER2_type -2040 451 1 9450 166 104 77 chr15 24954641 24955060 -76425461 + L1MC3 LINE L1 6888 7294 -1286 397 239 9 44 chr15 24955060 24955173 -76425348 + MLT1F1 LTR MaLR 25 133 -434 9450 166 104 77 chr15 24955173 24955310 -76425211 + L1MC3 LINE L1 7294 7426 -1154 2097 104 0 42 chr15 24955310 24955618 -76424903 + AluSc SINE Alu 1 295 -14 9450 166 104 77 chr15 24955618 24956055 -76424466 + L1MC3 LINE L1 7426 8580 0 2339 90 3 0 chr15 24957831 24958132 -76422389 + AluSp SINE Alu 1 302 -11 2338 177 20 22 chr15 24958849 24959307 -76421214 + MLT1C LTR MaLR 1 457 -10 489 241 111 128 chr15 24959807 24960368 -76420153 + MLT1G LTR MaLR 40 590 0 2541 62 0 3 chr15 24961013 24961317 -76419204 + AluY SINE Alu 1 303 -8 1903 168 3 0 chr15 24961467 24961765 -76418756 - AluJb SINE Alu -13 299 1 551 240 120 5 chr15 24962852 24963052 -76417469 - MIR SINE MIR -19 243 21 320 310 26 9 chr15 24963041 24963154 -76417367 + MIR SINE MIR 46 160 -102 * 1110 71 0 0 chr15 24963470 24963610 -76416911 + AluSg/x SINE Alu 173 312 0 201 325 44 26 chr15 24966293 24966407 -76414114 - MIR3 SINE MIR -87 121 6 288 239 11 34 chr15 24966411 24966499 -76414022 + (TTCA)n Simple_repeat Simple_repeat 3 88 0 679 312 98 21 chr15 24967565 24967995 -76412526 - L1MC/D LINE L1 -2069 5739 5277 21 0 0 0 chr15 24968074 24968095 -76412426 + AT_rich Low_complexity Low_complexity 1 21 0 309 258 178 48 chr15 24968154 24968333 -76412188 + L1MC4a LINE L1 5795 5949 -1859 2067 153 43 85 chr15 24968333 24968816 -76411705 + MLT2C2 LTR ERVL 1 463 -1 309 258 178 48 chr15 24968816 24968973 -76411548 + L1MC4a LINE L1 5949 6175 -1633 351 96 0 0 chr15 24970071 24970123 -76410398 + (CA)n Simple_repeat Simple_repeat 2 53 0 566 313 82 0 chr15 24971050 24971258 -76409263 - MIR SINE MIR -20 242 18 1354 205 85 3 chr15 24972318 24972478 -76408043 - AluJo SINE Alu -6 306 160 180 0 0 0 chr15 24972478 24972498 -76408023 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1354 205 85 3 chr15 24972498 24972620 -76407901 - AluJo SINE Alu -152 160 1 289 278 22 0 chr15 24973300 24973390 -76407131 - L2 LINE L2 0 3313 3222 1843 104 4 19 chr15 24974803 24975072 -76405449 + AluSx SINE Alu 39 303 -9 204 40 0 0 chr15 24975075 24975100 -76405421 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 464 310 154 16 chr15 24975251 24975622 -76404899 - L1M4 LINE L1 -2579 3567 3146 2169 107 10 0 chr15 24975897 24976187 -76404334 + AluSx SINE Alu 5 297 -15 1693 156 39 67 chr15 24976246 24976604 -76403917 - MER7A DNA MER2_type 0 346 1 260 224 0 141 chr15 24976800 24976871 -76403650 - MIR SINE MIR 0 262 183 1561 148 50 44 chr15 24976871 24977169 -76403352 - AluJo SINE Alu -8 304 5 1814 177 0 3 chr15 24977175 24977469 -76403052 - AluJo SINE Alu -19 293 1 260 224 0 141 chr15 24977469 24977546 -76402975 - MIR SINE MIR -84 178 129 32 26 0 0 chr15 24978373 24978412 -76402109 + AT_rich Low_complexity Low_complexity 1 39 0 240 235 10 49 chr15 24978652 24978668 -76401853 + (TATG)n Simple_repeat Simple_repeat 3 18 -82 198 0 0 0 chr15 24978668 24978690 -76401831 + (TAGG)n Simple_repeat Simple_repeat 1 22 0 240 235 10 49 chr15 24978690 24978775 -76401746 + (TATG)n Simple_repeat Simple_repeat 18 100 0 197 329 24 0 chr15 24978780 24978865 -76401656 - MIR SINE MIR -8 254 168 200 308 11 11 chr15 24978923 24979014 -76401507 - MIR SINE MIR -74 188 98 335 272 68 0 chr15 24979015 24979118 -76401403 - MIR SINE MIR -90 172 63 2580 172 42 22 chr15 24979168 24979673 -76400848 + MLT2B2 LTR ERVL 1 515 0 909 263 211 12 chr15 24980117 24980543 -76399978 + LTR33 LTR ERVL 3 513 -8 335 324 0 0 chr15 24981263 24981368 -76399153 + L1ME2 LINE L1 6038 6142 -22 309 215 15 0 chr15 24981471 24981536 -76398985 + L1MC4 LINE L1 6638 6703 -1339 2613 62 3 0 chr15 24981537 24981846 -76398675 - AluY SINE Alu -1 310 1 710 321 105 24 chr15 24981884 24982778 -76397743 + L1ME3A LINE L1 4401 5367 -779 2478 44 13 32 chr15 24982797 24983113 -76397408 + AluY SINE Alu 1 310 -1 646 310 39 18 chr15 24983241 24983622 -76396899 + L1ME3A LINE L1 5557 5951 -213 28 0 0 0 chr15 24983834 24983862 -76396659 + AT_rich Low_complexity Low_complexity 1 28 0 2113 114 0 23 chr15 24984653 24984952 -76395569 - AluSg SINE Alu -18 292 1 2235 124 3 3 chr15 24987609 24987916 -76392605 - AluSx SINE Alu -5 307 1 189 276 216 17 chr15 24989511 24989692 -76390829 + MIR SINE MIR 19 235 -27 27 0 0 0 chr15 24989962 24989989 -76390532 + AT_rich Low_complexity Low_complexity 1 27 0 3549 123 26 9 chr15 24989989 24990488 -76390033 - L1MC1 LINE L1 0 6333 5821 2073 129 3 0 chr15 24990488 24990775 -76389746 - AluSx SINE Alu -4 308 21 3549 123 26 9 chr15 24990775 24990853 -76389668 - L1MC1 LINE L1 -512 5821 5746 2175 118 0 3 chr15 24991330 24991618 -76388903 - AluSx SINE Alu -25 287 1 1108 221 79 25 chr15 24991664 24991981 -76388540 - L1ME1 LINE L1 -5 6161 5828 4337 238 43 44 chr15 24992226 24993285 -76387236 + L1M4 LINE L1 1 1060 -5586 1984 143 3 20 chr15 24993285 24993586 -76386935 + AluSx SINE Alu 1 296 -16 4337 238 43 44 chr15 24993586 24993841 -76386680 + L1M4 LINE L1 1060 1314 -5332 1827 161 0 30 chr15 24993841 24994145 -76386376 + AluJo SINE Alu 1 295 -17 4337 238 43 44 chr15 24994145 24994845 -76385676 + L1M4 LINE L1 1314 2018 -4628 1458 168 183 40 chr15 24994950 24995350 -76385171 + MSTB2 LTR MaLR 1 457 0 987 206 78 5 chr15 24995350 24995704 -76384817 + L1M4 LINE L1 2588 2970 -3674 390 310 110 0 chr15 24995847 24996002 -76384519 - MER5B DNA MER1_type -4 174 3 315 260 48 19 chr15 24996010 24996114 -76384407 + MIR SINE MIR 13 119 -143 272 26 0 26 chr15 24996274 24996312 -76384209 + (CAT)n Simple_repeat Simple_repeat 3 39 0 396 0 0 0 chr15 24996595 24996639 -76383882 + (CA)n Simple_repeat Simple_repeat 2 45 0 241 320 100 7 chr15 24996918 24997157 -76383364 + L1ME4a LINE L1 904 1172 -4947 255 103 0 0 chr15 24997157 24997196 -76383325 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 241 320 100 7 chr15 24997196 24997225 -76383296 + L1ME4a LINE L1 1172 1197 -4922 2659 148 11 25 chr15 24997352 24997791 -76382730 + Tigger2a DNA MER2_type 1 433 -1 237 340 10 0 chr15 24997959 24998059 -76382462 + L1ME4a LINE L1 4721 4821 -1308 311 303 99 36 chr15 24998118 24998339 -76382182 + L1ME4a LINE L1 4889 5123 -1006 215 30 0 30 chr15 24998401 24998434 -76382087 + (TAAAAA)n Simple_repeat Simple_repeat 2 33 0 275 269 0 25 chr15 24998802 24998921 -76381600 + T-rich Low_complexity Low_complexity 5 120 0 511 254 78 54 chr15 24999044 24999379 -76381142 + L1ME4a LINE L1 5762 6104 0 1174 182 43 38 chr15 24999461 24999808 -76380713 - L1MEc LINE L1 -4176 2220 1872 620 246 77 49 chr15 24999792 25000182 -76380339 - L1MEc LINE L1 -4993 1403 1003 * 2124 273 49 5 chr15 25000223 25000810 -76379711 - L1MEc LINE L1 -5578 818 206 942 282 59 17 chr15 25000818 25001105 -76379416 + ERVL LTR ERVL 1341 1639 -4125 261 0 0 0 chr15 25001789 25001818 -76378703 + (CA)n Simple_repeat Simple_repeat 2 30 0 184 306 81 62 chr15 25002540 25002773 -76377748 - L2 LINE L2 -557 2757 2512 2171 110 3 0 chr15 25002773 25003093 -76377428 + AluSg SINE Alu 1 321 0 184 306 81 62 chr15 25003093 25003243 -76377278 - L2 LINE L2 -802 2512 2366 183 263 53 18 chr15 25003303 25003360 -76377161 + MIR3 SINE MIR 10 68 -140 1802 189 39 8 chr15 25003610 25003970 -76376551 + MLT2D LTR ERVL 3 373 -41 225 246 29 0 chr15 25003970 25004039 -76376482 + (TA)n Simple_repeat Simple_repeat 2 72 0 257 224 0 0 chr15 25004041 25004099 -76376422 + MLT2D LTR ERVL 455 512 -8 2259 89 3 7 chr15 25005165 25005456 -76375065 + AluSg1 SINE Alu 14 303 -6 1156 101 0 0 chr15 25006103 25006252 -76374269 + AluSg/x SINE Alu 149 297 -15 303 177 302 10 chr15 25009474 25009570 -76370951 + MLT1E1 LTR MaLR 2 125 -529 3985 166 26 35 chr15 25009659 25010441 -76370080 + LTR1 LTR ERV1 11 785 0 574 225 0 0 chr15 25010441 25010552 -76369969 + MLT1E1 LTR MaLR 537 647 -7 828 201 65 15 chr15 25010555 25010754 -76369767 + MLT1A2 LTR MaLR 1 209 -165 4494 29 0 0 chr15 25010774 25011295 -76369226 - L1PA5 LINE L1 -1795 4351 3831 8650 38 7 2 chr15 25011295 25013100 -76367421 + L1PA5 LINE L1 4342 6151 -3 761 200 33 7 chr15 25013146 25013296 -76367225 + MLT1A2 LTR MaLR 237 390 0 317 185 169 23 chr15 25015648 25015778 -76364743 + Charlie4a DNA MER1_type 251 399 -109 2395 80 0 13 chr15 25015789 25016102 -76364419 - AluY SINE Alu -2 309 1 1098 60 0 8 chr15 25016103 25016236 -76364285 - AluY SINE Alu -179 132 1 447 125 0 0 chr15 25016244 25016308 -76364213 + Charlie4a DNA MER1_type 408 471 -37 583 274 81 62 chr15 25016345 25017032 -76363489 - L1MEd LINE L1 -4682 1628 871 475 290 38 27 chr15 25017952 25018276 -76362245 + L1M4 LINE L1 4318 4657 -1489 3456 162 89 60 chr15 25018527 25018857 -76361664 - L1MB3 LINE L1 -1 6182 5863 2392 72 10 7 chr15 25018857 25019161 -76361360 - AluY SINE Alu -6 305 1 3456 162 89 60 chr15 25019161 25019490 -76361031 - L1MB3 LINE L1 -320 5863 5545 1964 142 6 19 chr15 25019490 25019801 -76360720 - AluJb SINE Alu 0 312 6 3456 162 89 60 chr15 25019801 25019939 -76360582 - L1MB3 LINE L1 -638 5545 5413 2510 139 39 24 chr15 25019939 25020407 -76360114 - L1MA9 LINE L1 -3 6309 5835 3456 162 89 60 chr15 25020407 25020806 -76359715 - L1MB3 LINE L1 -770 5413 4931 21 57 0 0 chr15 25020807 25020842 -76359679 + AT_rich Low_complexity Low_complexity 1 35 0 2191 112 3 16 chr15 25021078 25021382 -76359139 + AluSx SINE Alu 1 300 -12 2170 113 0 0 chr15 25022415 25022723 -76357798 + AluSx SINE Alu 1 308 0 237 303 37 41 chr15 25022727 25022740 -76357781 + L1MC4a LINE L1 4123 4135 -2011 1947 221 94 29 chr15 25022740 25023354 -76357167 + MLT1E1 LTR MaLR 1 654 0 237 303 37 41 chr15 25023354 25023558 -76356963 + L1MC4a LINE L1 4135 4339 -1807 2512 131 52 24 chr15 25023559 25023884 -76356637 - Tigger2a DNA MER2_type -2275 433 92 195 42 0 0 chr15 25023884 25023908 -76356613 + (GGA)n Simple_repeat Simple_repeat 3 26 0 2512 131 52 24 chr15 25023908 25024001 -76356520 - Tigger2a DNA MER2_type -2616 92 3 403 299 125 5 chr15 25024004 25024188 -76356333 - MIR SINE MIR -7 255 50 253 294 52 0 chr15 25024468 25024621 -76355900 + L1MC4a LINE L1 4883 5043 -1103 330 316 73 38 chr15 25025264 25025692 -76354829 + L1MC4a LINE L1 5260 5706 -415 285 270 98 23 chr15 25025713 25025887 -76354634 + L1MC4a LINE L1 5751 5937 -1871 219 139 0 0 chr15 25026225 25026261 -76354260 + (TA)n Simple_repeat Simple_repeat 2 37 0 270 81 0 0 chr15 25026266 25026303 -76354218 + (TG)n Simple_repeat Simple_repeat 2 38 0 1783 159 22 0 chr15 25026309 25026585 -76353936 - AluJb SINE Alu -30 282 1 287 292 30 77 chr15 25028985 25029082 -76351439 + L2 LINE L2 2613 2700 -614 2468 90 0 0 chr15 25029082 25029383 -76351138 + AluSx SINE Alu 1 301 -11 287 292 30 77 chr15 25029383 25029453 -76351068 + L2 LINE L2 2700 2772 -542 1950 131 0 24 chr15 25030260 25030551 -76349970 + AluSx SINE Alu 21 304 -8 23 33 0 0 chr15 25030551 25030581 -76349940 + AT_rich Low_complexity Low_complexity 1 30 0 477 257 129 83 chr15 25030642 25031009 -76349512 - HAL1 LINE L1 -115 2392 1999 1978 194 6 0 chr15 25031009 25031355 -76349166 - MER7A DNA MER2_type 0 346 1 477 257 129 83 chr15 25031355 25031435 -76349086 - HAL1 LINE L1 -508 1999 1924 437 228 71 16 chr15 25031436 25031620 -76348901 + HAL1 LINE L1 1716 1909 -598 1805 106 14 48 chr15 25031663 25031955 -76348566 - AluSx SINE Alu -30 282 1 318 319 200 0 chr15 25031961 25032146 -76348375 - HAL1 LINE L1 -788 1719 1498 296 254 101 63 chr15 25032149 25032338 -76348183 - L2 LINE L2 -10 3303 3108 248 255 134 34 chr15 25032511 25032750 -76347771 - HAL1 LINE L1 -1171 1336 1074 343 280 99 55 chr15 25032753 25033070 -76347451 - L1MC4 LINE L1 -27 8015 7556 2125 89 64 0 chr15 25033319 25033601 -76346920 - AluSq SINE Alu -13 300 1 806 159 8 0 chr15 25033604 25033736 -76346785 - FLAM_A SINE Alu 0 133 1 1066 282 94 54 chr15 25034657 25034765 -76345756 - L1ME3A LINE L1 -297 5873 5771 2386 78 3 0 chr15 25034765 25035058 -76345463 - AluSg SINE Alu -16 294 1 1066 282 94 54 chr15 25035058 25035780 -76344741 - L1ME3A LINE L1 -399 5771 4996 855 251 119 52 chr15 25035790 25036495 -76344026 - L1ME3A LINE L1 -1197 4949 4031 704 284 163 34 chr15 25036552 25037536 -76342985 - L1ME3A LINE L1 -2734 3412 2302 26323 31 6 0 chr15 25037738 25041652 -76338869 + L1PA4 LINE L1 2252 6175 0 262 280 128 0 chr15 25042304 25042429 -76338092 - MER117 DNA MER1_type 0 197 57 315 268 85 20 chr15 25043168 25043436 -76337085 + L1M3d LINE L1 909 1187 -4704 396 251 144 46 chr15 25043628 25043967 -76336554 + L1MEc LINE L1 1704 1991 -4549 528 273 16 44 chr15 25043967 25044150 -76336371 + HAL1 LINE L1 138 315 -2192 1998 212 75 21 chr15 25044158 25044677 -76335844 - LTR55 LTR ERV -1 547 1 1042 248 234 18 chr15 25044887 25045553 -76334968 + HAL1 LINE L1 1671 2480 -27 2401 98 0 6 chr15 25045961 25046276 -76334245 + AluSq SINE Alu 1 313 0 2140 70 10 37 chr15 25047482 25047781 -76332740 + AluY SINE Alu 1 291 -20 2835 154 90 47 chr15 25047917 25048474 -76332047 - LTR12 LTR ERV1 -133 581 1 2165 103 3 31 chr15 25048992 25049312 -76331209 - AluY SINE Alu 0 311 1 223 224 21 35 chr15 25049942 25050085 -76330436 + (TTAA)n Simple_repeat Simple_repeat 4 144 0 2148 159 118 25 chr15 25051346 25051786 -76328735 - MLT1D LTR MaLR -2 503 23 2057 122 0 3 chr15 25052196 25052490 -76328031 - AluSx SINE Alu -19 293 1 221 360 0 10 chr15 25052936 25053036 -76327485 - L3 LINE CR1 -633 944 846 624 188 0 33 chr15 25053036 25053217 -76327304 + (TCCA)n Simple_repeat Simple_repeat 3 177 0 1554 205 3 0 chr15 25053217 25053500 -76327021 - AluJb SINE Alu -28 284 1 333 283 125 18 chr15 25054182 25054454 -76326067 + L2 LINE L2 2986 3286 -27 1093 111 0 26 chr15 25054478 25054654 -76325867 + AluSg/x SINE Alu 136 307 0 217 265 94 65 chr15 25055049 25055219 -76325302 - MIR SINE MIR -42 220 46 50 0 0 0 chr15 25055416 25055466 -76325055 + AT_rich Low_complexity Low_complexity 1 50 0 302 222 12 0 chr15 25059634 25059715 -76320806 - L1MC4 LINE L1 -1346 6696 6615 347 196 11 76 chr15 25059781 25059873 -76320648 - MER81 DNA DNA -2 112 27 1243 196 0 14 chr15 25062281 25062501 -76318020 + MER101B LTR ERV1 1 217 -353 765 214 22 45 chr15 25062836 25063014 -76317507 - MER82 DNA MER2_type -472 181 8 2362 163 216 161 chr15 25063020 25063264 -76317257 + L1MD3 LINE L1 6659 6888 -1107 444 19 0 0 chr15 25063264 25063317 -76317204 + (CA)n Simple_repeat Simple_repeat 2 54 0 2362 163 216 161 chr15 25063317 25063686 -76316835 + L1MD3 LINE L1 6888 7235 -760 604 230 36 7 chr15 25063686 25063825 -76316696 + MLT1A1 LTR MaLR 6 148 -419 2362 163 216 161 chr15 25063825 25064241 -76316280 + L1MD3 LINE L1 7235 7891 -104 2787 150 27 16 chr15 25064891 25065378 -76315143 + L1MB3 LINE L1 5584 6075 -108 228 299 141 4 chr15 25065780 25066014 -76314507 + L2 LINE L2 2138 2403 -911 589 250 42 32 chr15 25067544 25067791 -76312730 - MER4C LTR ERV1 0 597 325 948 95 7 7 chr15 25068121 25068258 -76312263 + MLT1A1 LTR MaLR 1 137 -228 3785 194 70 36 chr15 25068280 25069104 -76311417 + MER21B LTR ERV1 12 863 0 1229 164 26 17 chr15 25069114 25069345 -76311176 + MLT1A1 LTR MaLR 133 365 0 386 291 94 24 chr15 25069345 25069623 -76310898 + MLT1L LTR MaLR 57 461 -154 1365 206 120 59 chr15 25069693 25070169 -76310352 - MLT1D LTR MaLR 0 505 1 36 23 0 0 chr15 25070215 25070258 -76310263 + AT_rich Low_complexity Low_complexity 1 43 0 1503 114 4 92 chr15 25070533 25070806 -76309715 - AluJb SINE Alu -14 298 50 2097 92 3 46 chr15 25070846 25071151 -76309370 + AluSx SINE Alu 1 292 -20 2550 154 31 1 chr15 25072931 25073574 -76306947 - L1PA13 LINE L1 -626 5539 4874 3788 121 40 8 chr15 25073577 25074182 -76306339 + L1PA13 LINE L1 5540 6163 0 1138 272 175 18 chr15 25076690 25077303 -76303218 - L1ME4a LINE L1 -57 6064 5356 269 289 157 25 chr15 25077545 25077666 -76302855 + MIR SINE MIR 46 182 -80 794 238 121 0 chr15 25077738 25077978 -76302543 + MLT1F1 LTR MaLR 299 567 0 216 100 0 0 chr15 25077980 25078010 -76302511 + MIR SINE MIR 196 225 -37 714 256 102 63 chr15 25078037 25078498 -76302023 + MLT1H LTR MaLR 71 549 0 3782 128 2 6 chr15 25078710 25079239 -76301282 + MER1A DNA MER1_type 1 527 0 2581 171 89 0 chr15 25081041 25081514 -76299007 - MLT2B2 LTR ERVL 0 515 1 1527 171 14 31 chr15 25083030 25083317 -76297204 + AluJo SINE Alu 1 282 -30 2016 103 3 3 chr15 25083416 25083730 -76296791 + AluSx SINE Alu 3 316 0 3483 130 27 30 chr15 25084491 25084541 -76295980 - L1MB3 LINE L1 -3 6180 6131 1848 135 24 0 chr15 25084541 25084838 -76295683 - AluSg SINE Alu -6 304 1 3483 130 27 30 chr15 25084838 25085389 -76295132 - L1MB3 LINE L1 -52 6131 5581 1981 111 0 4 chr15 25085401 25085701 -76294820 + AluSq SINE Alu 10 308 0 322 280 70 14 chr15 25086450 25086593 -76293928 + L1MB8 LINE L1 6027 6177 -1 2942 190 26 3 chr15 25086721 25087301 -76293220 + L1MB3 LINE L1 5591 6183 0 370 306 214 20 chr15 25087525 25087777 -76292744 + L3 LINE CR1 192 492 -1085 253 245 50 86 chr15 25087950 25088089 -76292432 + L3 LINE CR1 743 876 -701 22 35 0 0 chr15 25088802 25088831 -76291690 + AT_rich Low_complexity Low_complexity 1 29 0 355 231 0 0 chr15 25089062 25089127 -76291394 - L2 LINE L2 0 3272 3208 291 288 38 38 chr15 25089324 25089456 -76291065 - L2 LINE L2 -583 2731 2600 2101 114 3 0 chr15 25091394 25091693 -76288828 + AluSq SINE Alu 1 300 -13 25 31 0 0 chr15 25091952 25091984 -76288537 + AT_rich Low_complexity Low_complexity 1 32 0 1784 143 30 50 chr15 25092147 25092248 -76288273 + L1MB3 LINE L1 5824 5925 -258 2201 94 0 7 chr15 25092248 25092565 -76287956 - AluSx SINE Alu 0 312 1 1784 143 30 50 chr15 25092565 25092826 -76287695 + L1MB3 LINE L1 5925 6179 -4 30 0 0 0 chr15 25092827 25092857 -76287664 + AT_rich Low_complexity Low_complexity 1 30 0 239 289 28 42 chr15 25093583 25093725 -76286796 - MER117 DNA MER1_type -38 159 20 27 32 0 32 chr15 25095457 25095476 -76285045 + AT_rich Low_complexity Low_complexity 1 19 -42 487 0 32 0 chr15 25095476 25095539 -76284982 + (CA)n Simple_repeat Simple_repeat 2 66 0 2215 81 0 0 chr15 25095545 25095830 -76284691 - AluSx SINE Alu -27 285 1 27 32 0 32 chr15 25095830 25095866 -76284655 + AT_rich Low_complexity Low_complexity 24 61 0 496 269 85 40 chr15 25096450 25096673 -76283848 - Charlie8 DNA MER1_type -2184 233 1 2031 135 0 6 chr15 25097611 25097922 -76282599 - AluSx SINE Alu -3 309 1 2158 240 64 18 chr15 25099834 25100487 -76280034 + L1ME3A LINE L1 5488 6170 0 910 237 25 29 chr15 25100966 25101059 -76279462 - MER33 DNA MER1_type -2264 321 229 243 0 0 0 chr15 25101059 25101086 -76279435 + (TA)n Simple_repeat Simple_repeat 1 27 0 2450 56 0 10 chr15 25101086 25101392 -76279129 - AluY SINE Alu -8 303 1 910 237 25 29 chr15 25101392 25101515 -76279006 - MER33 DNA MER1_type -2355 230 108 1671 164 40 95 chr15 25101515 25101688 -76278833 + MSTB LTR MaLR 1 182 -244 1818 84 0 0 chr15 25101688 25101925 -76278596 + AluSq SINE Alu 1 237 -76 1671 164 40 95 chr15 25101925 25101978 -76278543 + MSTB LTR MaLR 182 236 -190 2425 44 0 41 chr15 25101978 25102293 -76278228 + AluY SINE Alu 1 302 -9 1671 164 40 95 chr15 25102293 25102516 -76278005 + MSTB LTR MaLR 236 426 0 910 237 25 29 chr15 25102516 25102576 -76277945 - MER33 DNA MER1_type -2477 108 44 306 132 0 0 chr15 25102668 25102721 -76277800 + (TC)n Simple_repeat Simple_repeat 2 54 0 423 56 0 0 chr15 25102721 25102775 -76277746 + (CA)n Simple_repeat Simple_repeat 1 54 0 542 307 77 38 chr15 25102824 25103163 -76277358 + MLT1K LTR MaLR 237 588 0 243 0 0 0 chr15 25103404 25103431 -76277090 + (A)n Simple_repeat Simple_repeat 1 27 0 437 268 150 7 chr15 25104293 25104446 -76276075 - MER5A DNA MER1_type -6 183 9 21 0 0 0 chr15 25104683 25104704 -76275817 + AT_rich Low_complexity Low_complexity 1 21 0 6049 168 45 15 chr15 25104920 25105052 -76275469 - L1MC1 LINE L1 -2 6331 6204 2092 121 0 37 chr15 25105052 25105375 -76275146 - AluSq SINE Alu -2 311 1 6049 168 45 15 chr15 25105375 25106696 -76273825 - L1MC1 LINE L1 -129 6204 4829 581 246 82 10 chr15 25106713 25106908 -76273613 - L1MC1 LINE L1 -1353 4793 4585 32 26 0 0 chr15 25107164 25107203 -76273318 + AT_rich Low_complexity Low_complexity 1 39 0 205 261 0 0 chr15 25107610 25107656 -76272865 + (CA)n Simple_repeat Simple_repeat 2 47 0 909 270 92 57 chr15 25108133 25108674 -76271847 + L1MB5 LINE L1 8 567 -5975 3597 130 9 65 chr15 25108700 25109379 -76271142 + L1MA5 LINE L1 5268 5908 -392 2751 134 23 48 chr15 25109425 25109476 -76271045 + L1MA5 LINE L1 5793 5844 -456 2054 118 3 0 chr15 25109476 25109780 -76270741 + AluSx SINE Alu 3 307 -5 2751 134 23 48 chr15 25109780 25110249 -76270272 + L1MA5 LINE L1 5844 6300 0 2793 234 66 66 chr15 25110273 25110760 -76269761 + L1MB5 LINE L1 592 1077 -5595 1908 155 0 0 chr15 25110760 25111057 -76269464 - AluSx SINE Alu -14 298 2 2793 234 66 66 chr15 25111057 25112196 -76268325 + L1MB5 LINE L1 1077 6664 -8 3879 169 113 64 chr15 25113160 25114498 -76266023 - pTR5 LTR ERV1 0 2438 743 197 319 33 22 chr15 25115242 25115333 -76265188 + MIR SINE MIR 95 186 -76 2117 108 3 0 chr15 25115787 25116082 -76264439 + AluSx SINE Alu 1 296 -16 1969 114 3 7 chr15 25116151 25116440 -76264081 + AluSx SINE Alu 1 288 -24 254 282 157 14 chr15 25116446 25116662 -76263859 + L1P LINE L1 4053 4299 -1847 5201 179 38 41 chr15 25116824 25118832 -76261689 - L1MA9 LINE L1 -1 7730 5719 217 0 61 0 chr15 25118832 25118865 -76261656 + (TAAAA)n Simple_repeat Simple_repeat 4 38 0 5201 179 38 41 chr15 25118865 25119397 -76261124 - L1MA9 LINE L1 -2012 5719 5187 1769 184 111 8 chr15 25119397 25119756 -76260765 + MSTD LTR MaLR 1 396 0 5201 179 38 41 chr15 25119756 25120411 -76260110 - L1MA9 LINE L1 -2544 5187 4532 1688 158 79 22 chr15 25120411 25120766 -76259755 + THE1C LTR MaLR 1 375 0 5201 179 38 41 chr15 25120766 25121844 -76258677 - L1MA9 LINE L1 -3199 4532 3323 1512 190 31 3 chr15 25121844 25122133 -76258388 - AluJo SINE Alu -15 297 1 5201 179 38 41 chr15 25122133 25122163 -76258358 - L1MA9 LINE L1 -4408 3323 3294 10769 209 61 18 chr15 25122194 25126066 -76254455 + L1MB7 LINE L1 2120 6167 -17 852 209 95 41 chr15 25126081 25126397 -76254124 + MER69 DNA AcHobo 2138 2470 -56 431 298 121 15 chr15 25126429 25126715 -76253806 + L1ME LINE L1 5429 5638 -528 31566 103 7 12 chr15 25127606 25133000 -76247521 + L1PA7 LINE L1 700 6091 -378 2247 60 3 18 chr15 25133000 25133282 -76247239 + AluY SINE Alu 19 296 -15 31566 103 7 12 chr15 25133282 25133659 -76246862 + L1PA7 LINE L1 6091 6468 -1 2019 122 42 0 chr15 25133787 25134074 -76246447 - AluSx SINE Alu -1 311 13 1077 66 7 0 chr15 25134174 25134310 -76246211 + L1PA7 LINE L1 6017 6153 -1 1698 141 67 20 chr15 25134438 25134735 -76245786 - AluSx SINE Alu -1 311 1 372 246 131 8 chr15 25134920 25135050 -76245471 - MER104 DNA Tc2 -14 166 21 402 258 80 13 chr15 25135241 25135392 -76245129 + MER69A DNA AcHobo 13 173 -4 2006 164 49 27 chr15 25135559 25135925 -76244596 + MLT1A2 LTR MaLR 1 374 0 316 262 115 25 chr15 25136946 25137068 -76243453 - L2 LINE L2 0 3313 3181 3023 141 58 0 chr15 25137180 25137662 -76242859 - L1MB2 LINE L1 -2 6169 5660 988 210 223 3 chr15 25138407 25138654 -76241867 - MLT2B2 LTR ERVL -181 233 1 786 201 187 10 chr15 25138654 25138863 -76241658 + MLT1D LTR MaLR 322 505 0 898 242 41 0 chr15 25138951 25139145 -76241376 + MER3 DNA MER1_type 4 205 -4 818 216 11 28 chr15 25139156 25139337 -76241184 + MER5B DNA MER1_type 1 178 0 245 179 128 51 chr15 25140090 25140168 -76240353 + HAL1b LINE L1 604 687 -661 574 258 109 45 chr15 25140347 25140568 -76239953 - MIR SINE MIR -27 235 1 865 173 24 18 chr15 25140890 25141058 -76239463 - L1MA9 LINE L1 0 6312 6144 1154 184 148 0 chr15 25141064 25141338 -76239183 + AluJo SINE Alu 2 311 0 683 157 0 0 chr15 25141341 25141456 -76239065 - L1MA9 LINE L1 -178 6134 6020 204 40 0 0 chr15 25142244 25142269 -76238252 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 231 36 0 0 chr15 25142268 25142296 -76238225 + (CA)n Simple_repeat Simple_repeat 1 28 0 471 157 0 0 chr15 25142368 25142438 -76238083 - MER8 DNA MER2_type 0 239 170 * 2736 131 18 31 chr15 25142421 25142840 -76237681 + Tigger2 DNA MER2_type 2267 2681 -37 1588 175 133 30 chr15 25142840 25143245 -76237276 + LTR7 LTR ERV1 3 449 -1 2736 131 18 31 chr15 25143245 25143283 -76237238 + Tigger2 DNA MER2_type 2681 2718 0 1683 241 27 31 chr15 25143787 25144113 -76236408 + L1M4 LINE L1 4256 4581 -1565 1143 188 14 36 chr15 25144113 25144336 -76236185 + MER20B DNA MER1_type 2 219 0 1683 241 27 31 chr15 25144336 25144494 -76236027 + L1M4 LINE L1 4581 4738 -1408 1750 222 102 14 chr15 25144992 25145501 -76235020 + L1M4 LINE L1 4747 5300 -846 3136 224 21 34 chr15 25145501 25146278 -76234243 + L1MB7 LINE L1 3 769 -5773 4538 182 70 52 chr15 25146282 25147528 -76232993 + L1MB7 LINE L1 4704 5928 -736 5365 105 68 7 chr15 25147528 25148263 -76232258 - LTR17 LTR ERV1 0 780 1 4538 182 70 52 chr15 25148263 25148962 -76231559 + L1MB7 LINE L1 5928 6614 -50 1743 149 20 40 chr15 25149577 25149879 -76230642 - AluJo SINE Alu -16 296 1 379 316 106 28 chr15 25149965 25150389 -76230132 + L2 LINE L2 1820 2276 -1038 288 292 188 0 chr15 25151122 25151266 -76229255 - L2 LINE L2 0 3272 3102 491 294 0 0 chr15 25152350 25152527 -76227994 + G-rich Low_complexity Low_complexity 1 177 0 1448 198 29 3 chr15 25152670 25152983 -76227538 - MER74A LTR ERVL -222 336 16 764 288 171 16 chr15 25153686 25154137 -76226384 + MER20B DNA MER1_type 213 733 -50 1239 110 48 118 chr15 25154870 25154978 -76225543 - L1MA8 LINE L1 -5 6286 6172 2036 129 0 0 chr15 25154978 25155265 -76225256 - AluSx SINE Alu -25 287 1 1239 110 48 118 chr15 25155265 25155468 -76225053 - L1MA8 LINE L1 -119 6172 6013 285 29 0 0 chr15 25157406 25157440 -76223081 + (A)n Simple_repeat Simple_repeat 1 34 0 794 165 0 0 chr15 25208699 25208820 -76171701 + FLAM_A SINE Alu 1 121 -12 499 314 116 59 chr15 25208912 25209260 -76171261 + L1MC4a LINE L1 4161 4547 -1599 2122 121 7 0 chr15 25209260 25209565 -76170956 + AluSx SINE Alu 1 307 -5 499 314 116 59 chr15 25209565 25209709 -76170812 + L1MC4a LINE L1 4547 4681 -1465 1377 246 81 38 chr15 25209761 25210256 -76170265 + MLT1H1 LTR MaLR 38 553 -2 521 155 16 16 chr15 25210266 25210279 -76170242 + GA-rich Low_complexity Low_complexity 3 15 -116 2230 81 0 7 chr15 25210279 25210575 -76169946 + AluSg SINE Alu 1 294 -16 521 155 16 16 chr15 25210575 25210690 -76169831 + GA-rich Low_complexity Low_complexity 14 131 0 386 281 294 0 chr15 25210751 25210979 -76169542 - L2 LINE L2 -4 3309 3015 347 295 127 27 chr15 25210994 25211363 -76169158 + L1MC4a LINE L1 5518 5923 -1885 23 0 0 0 chr15 25211682 25211705 -76168816 + AT_rich Low_complexity Low_complexity 1 23 0 1684 135 11 18 chr15 25212220 25212501 -76168020 + AluJo SINE Alu 1 279 -33 220 180 24 18 chr15 25212611 25212666 -76167855 - MIR SINE MIR -52 156 98 250 140 20 20 chr15 25214250 25214300 -76166221 - MIR SINE MIR -115 147 98 1687 135 12 55 chr15 25216213 25216539 -76163982 - AluJo SINE Alu 0 312 1 216 263 100 38 chr15 25216590 25216670 -76163851 - L2 LINE L2 -32 3281 3197 394 310 9 0 chr15 25217283 25217399 -76163122 + MLT1H LTR MaLR 108 224 -325 313 267 95 43 chr15 25217399 25217515 -76163006 - MIR SINE MIR -132 130 9 279 0 0 0 chr15 25218071 25218102 -76162419 + (TG)n Simple_repeat Simple_repeat 2 32 0 2017 120 0 3 chr15 25218191 25218483 -76162038 + AluSq SINE Alu 1 291 -22 2031 91 3 21 chr15 25218485 25218797 -76161724 + AluY SINE Alu 1 307 0 2392 63 7 0 chr15 25218964 25219267 -76161254 - AluY SINE Alu -6 305 1 269 298 67 0 chr15 25219415 25219519 -76161002 - L1ME LINE L1 -357 5813 5703 415 313 74 44 chr15 25219546 25219843 -76160678 - L1ME LINE L1 -459 5662 5357 370 260 0 32 chr15 25219871 25219994 -76160527 - L1ME LINE L1 -1567 4579 4461 22 35 0 0 chr15 25220998 25221027 -76159494 + AT_rich Low_complexity Low_complexity 1 29 0 222 37 0 0 chr15 25221077 25221104 -76159417 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1786 132 3 21 chr15 25221107 25221395 -76159126 - AluSx SINE Alu -25 287 5 456 285 72 101 chr15 25221405 25221861 -76158660 + L1MDb LINE L1 1148 1697 -1070 1733 173 3 3 chr15 25221861 25222167 -76158354 + AluJb SINE Alu 5 310 -2 456 285 72 101 chr15 25222167 25222208 -76158313 + L1MDb LINE L1 1697 1738 -1029 1981 260 58 73 chr15 25222338 25223216 -76157305 - L1MC4 LINE L1 -6 8036 7146 180 0 0 0 chr15 25223216 25223236 -76157285 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1981 260 58 73 chr15 25223236 25223256 -76157265 - L1MC4 LINE L1 -896 7146 7127 2221 73 0 3 chr15 25223256 25223542 -76156979 - AluY SINE Alu -26 285 1 1981 260 58 73 chr15 25223542 25223602 -76156919 - L1MC4 LINE L1 -915 7127 7090 201 94 0 0 chr15 25223602 25223634 -76156887 + (TATG)n Simple_repeat Simple_repeat 1 32 0 1792 149 17 3 chr15 25223645 25223941 -76156580 - L1M2 LINE L1 -612 5700 5401 772 243 27 0 chr15 25223941 25224089 -76156432 - MER58A DNA MER1_type 0 152 1 388 331 238 5 chr15 25224577 25224955 -76155566 + L2 LINE L2 2257 2722 -592 2314 193 52 4 chr15 25225044 25225525 -76154996 + MLT1D LTR MaLR 1 504 -1 347 271 33 49 chr15 25225751 25225873 -76154648 - MIR SINE MIR -9 253 134 2085 146 108 28 chr15 25225873 25226180 -76154341 - Tigger2 DNA MER2_type 0 2718 2372 186 43 0 0 chr15 25226180 25226203 -76154318 + (GGA)n Simple_repeat Simple_repeat 2 24 0 2085 146 108 28 chr15 25226203 25226285 -76154236 - Tigger2 DNA MER2_type -346 2372 2298 545 161 5 38 chr15 25226304 25226490 -76154031 + GA-rich Low_complexity Low_complexity 1 180 0 207 256 0 37 chr15 25226558 25226640 -76153881 + (GTTTG)n Simple_repeat Simple_repeat 5 83 0 291 54 0 0 chr15 25227963 25228000 -76152521 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 263 308 48 10 chr15 25228049 25228153 -76152368 - L2 LINE L2 -52 3261 3154 187 274 226 0 chr15 25228173 25228275 -76152246 - L2 LINE L2 -8 3305 3181 307 351 58 0 chr15 25228366 25228537 -76151984 - L2 LINE L2 -610 2704 2524 731 189 44 9 chr15 25228823 25229049 -76151472 - MER57A LTR ERV1 0 403 201 359 183 49 12 chr15 25229034 25229116 -76151405 - LTR54 LTR ERV1 -271 239 155 * 424 81 16 0 chr15 25229116 25229178 -76151343 + (TC)n Simple_repeat Simple_repeat 2 64 0 761 163 95 0 chr15 25229205 25229352 -76151169 - LTR54 LTR ERV1 -345 165 5 313 241 25 13 chr15 25229495 25229574 -76150947 + GA-rich Low_complexity Low_complexity 3 82 0 2205 127 0 3 chr15 25229781 25230088 -76150433 - AluSc SINE Alu -3 306 1 5624 191 45 28 chr15 25230844 25232304 -76148217 + L1MB3 LINE L1 3982 5415 -768 2450 67 3 3 chr15 25232304 25232602 -76147919 - AluY SINE Alu -13 298 1 5624 191 45 28 chr15 25232602 25232809 -76147712 + L1MB3 LINE L1 5415 5617 -566 333 0 0 0 chr15 25232809 25232846 -76147675 + (TG)n Simple_repeat Simple_repeat 1 37 0 5624 191 45 28 chr15 25232846 25232869 -76147652 + L1MB3 LINE L1 5617 5638 -545 1720 178 0 0 chr15 25232869 25233133 -76147388 - AluJb SINE Alu -32 280 17 5624 191 45 28 chr15 25233133 25233612 -76146909 + L1MB3 LINE L1 5638 6183 0 1456 165 26 0 chr15 25233607 25233873 -76146648 + L1M3 LINE L1 5428 5700 -480 * 265 241 130 37 chr15 25234177 25234285 -76146236 + L2 LINE L2 3187 3304 -9 1934 136 0 52 chr15 25235008 25235194 -76145327 - AluSx SINE Alu -5 307 144 2585 71 0 0 chr15 25235194 25235505 -76145016 - AluY SINE Alu 0 311 1 1934 136 0 52 chr15 25235505 25235642 -76144879 - AluSx SINE Alu -168 144 1 495 242 33 0 chr15 25235831 25235951 -76144570 + MIR SINE MIR 139 262 0 916 182 17 22 chr15 25236879 25237060 -76143461 - MLT2D LTR ERVL -234 180 1 1890 215 20 51 chr15 25237072 25237438 -76143083 + L1M4 LINE L1 4484 4829 -1317 1573 107 5 9 chr15 25237438 25237654 -76142867 - AluSg/x SINE Alu -13 297 83 1890 215 20 51 chr15 25237654 25237840 -76142681 + L1M4 LINE L1 4829 5019 -1127 606 309 55 60 chr15 25237963 25238129 -76142392 + HAL1b LINE L1 73 238 -1110 2274 94 3 0 chr15 25238129 25238444 -76142077 - AluSg SINE Alu 0 316 1 606 309 55 60 chr15 25238444 25238744 -76141777 + HAL1b LINE L1 238 539 -809 2947 82 13 0 chr15 25238749 25239140 -76141381 + L1PA10 LINE L1 5757 6152 -16 24 0 0 0 chr15 25239142 25239166 -76141355 + AT_rich Low_complexity Low_complexity 1 24 0 1594 169 29 88 chr15 25239341 25239796 -76140725 + L1MB7 LINE L1 4946 5373 -773 3557 146 51 2 chr15 25239800 25239923 -76140598 + L1MA9 LINE L1 5653 5768 -544 258 105 0 0 chr15 25239923 25239961 -76140560 + (TG)n Simple_repeat Simple_repeat 1 38 0 3557 146 51 2 chr15 25239961 25240466 -76140055 + L1MA9 LINE L1 5768 6312 0 371 56 19 0 chr15 25240484 25240538 -76139983 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 4266 160 23 27 chr15 25240867 25241070 -76139451 + L1MB7 LINE L1 5366 5568 -616 2613 56 0 0 chr15 25241070 25241375 -76139146 + AluY SINE Alu 1 305 -6 4266 160 23 27 chr15 25241375 25241988 -76138533 + L1MB7 LINE L1 5568 6179 -5 1113 141 32 2 chr15 25242025 25242273 -76138248 + AluSx SINE Alu 2 309 -1 1650 232 99 92 chr15 25242560 25242634 -76137887 + L1MC5 LINE L1 6541 6613 -1348 468 0 0 0 chr15 25242634 25242686 -76137835 + (TG)n Simple_repeat Simple_repeat 2 53 0 1650 232 99 92 chr15 25242686 25243159 -76137362 + L1MC5 LINE L1 6613 7108 -853 2090 129 7 3 chr15 25243159 25243454 -76137067 - AluSx SINE Alu -16 296 1 1650 232 99 92 chr15 25243454 25243771 -76136750 + L1MC5 LINE L1 7108 7421 -540 1057 133 0 0 chr15 25243826 25243977 -76136544 + AluSg/x SINE Alu 146 296 -16 515 248 7 0 chr15 25243986 25244139 -76136382 + GA-rich Low_complexity Low_complexity 4 157 0 1930 135 40 10 chr15 25244212 25244515 -76136006 + AluJb SINE Alu 1 312 0 308 314 25 38 chr15 25244645 25244804 -76135717 + L1ME3A LINE L1 6013 6169 -1 273 301 152 2 chr15 25245251 25245399 -76135122 + MIR SINE MIR 16 182 -62 2522 73 0 3 chr15 25245896 25246209 -76134312 + AluSx SINE Alu 1 312 0 883 220 17 0 chr15 25246937 25247107 -76133414 + MLT1C LTR MaLR 1 173 -217 1020 151 58 16 chr15 25247107 25247394 -76133127 + AluJo SINE Alu 1 353 0 998 222 32 5 chr15 25247426 25247642 -76132879 + MLT1C LTR MaLR 246 467 0 930 238 110 12 chr15 25247810 25248129 -76132392 - MSTD LTR MaLR 0 396 21 2605 116 16 49 chr15 25248129 25248576 -76131945 + MSTB1 LTR MaLR 1 432 0 930 238 110 12 chr15 25248576 25248600 -76131921 - MSTD LTR MaLR -375 21 1 300 182 61 0 chr15 25248769 25248835 -76131686 + LTR50 LTR ERVL 1 70 -725 251 299 106 23 chr15 25248873 25249090 -76131431 + L2 LINE L2 666 900 -2414 1289 224 131 8 chr15 25249242 25249608 -76130913 + L1MD2 LINE L1 5949 6359 0 231 333 138 8 chr15 25249985 25250108 -76130413 + L2 LINE L2 3134 3272 0 1356 157 39 74 chr15 25250152 25250176 -76130345 - L1MC3 LINE L1 0 7785 7762 1800 125 14 54 chr15 25250176 25250314 -76130207 + AluSx SINE Alu 1 143 -167 2339 43 0 7 chr15 25250314 25250593 -76129928 + AluY SINE Alu 35 311 0 1800 125 14 54 chr15 25250593 25250776 -76129745 + AluSx SINE Alu 143 310 0 1356 157 39 74 chr15 25250776 25251087 -76129434 - L1MC3 LINE L1 -23 7762 7461 4053 163 59 131 chr15 25251098 25251631 -76128890 - L1MC3 LINE L1 -658 7127 6557 299 65 22 0 chr15 25251631 25251677 -76128844 + MADE1 DNA Mariner 1 47 -33 4053 163 59 131 chr15 25251677 25252159 -76128362 - L1MC3 LINE L1 -1228 6557 6172 2039 147 0 7 chr15 25252159 25252465 -76128056 - AluSx SINE Alu -8 304 1 4053 163 59 131 chr15 25252465 25252689 -76127832 - L1MC3 LINE L1 -1613 6172 5934 1411 116 5 0 chr15 25252789 25252996 -76127525 + AluSp SINE Alu 90 297 -16 2361 160 21 36 chr15 25252996 25253253 -76127268 - L1MC3 LINE L1 -1928 5857 5609 1798 161 3 7 chr15 25253253 25253552 -76126969 + AluJb SINE Alu 1 298 -14 2361 160 21 36 chr15 25253552 25253762 -76126759 - L1MC3 LINE L1 -2176 5609 5397 2598 64 0 0 chr15 25254098 25254409 -76126112 - AluY SINE Alu 0 311 1 285 280 21 0 chr15 25254934 25255027 -76125494 + MIR SINE MIR 59 153 -109 383 289 128 50 chr15 25255100 25255342 -76125179 + Charlie8 DNA MER1_type 6 266 -2151 436 32 16 16 chr15 25255850 25255913 -76124608 + (CAT)n Simple_repeat Simple_repeat 1 63 0 760 192 0 0 chr15 25256059 25256184 -76124337 - FLAM_A SINE Alu -8 125 1 3841 150 147 107 chr15 25256206 25256306 -76124215 - Tigger6a DNA MER2_type -514 1083 988 2705 36 0 0 chr15 25256306 25256610 -76123911 - AluY SINE Alu -7 304 1 3841 150 147 107 chr15 25256610 25257550 -76122971 - Tigger6a DNA MER2_type -609 988 1 286 255 7 111 chr15 25257550 25257703 -76122818 + L2 LINE L2 3169 3305 -8 24 0 0 0 chr15 25257931 25257955 -76122566 + AT_rich Low_complexity Low_complexity 1 24 0 1356 120 0 0 chr15 25257955 25258139 -76122382 - AluSg/x SINE Alu -16 294 111 297 212 0 15 chr15 25258310 25258376 -76122145 - L2 LINE L2 -301 2971 2907 578 246 50 17 chr15 25258683 25258862 -76121659 + MER5A DNA MER1_type 3 187 -2 2178 125 0 0 chr15 25259055 25259352 -76121169 - AluSx SINE Alu -15 297 1 358 277 190 39 chr15 25259496 25259806 -76120715 + L1ME LINE L1 5258 5617 -504 320 267 10 10 chr15 25260831 25260932 -76119589 - L1MC4a LINE L1 -1893 5915 5815 2125 114 10 3 chr15 25260968 25261265 -76119256 + AluSx SINE Alu 1 299 -13 272 287 140 15 chr15 25261270 25261406 -76119115 - L1ME3A LINE L1 -30 6140 5988 303 174 96 43 chr15 25261521 25261636 -76118885 - L1MC5 LINE L1 -431 7530 7410 2039 101 0 7 chr15 25261638 25261914 -76118607 - AluSc SINE Alu -2 307 34 260 294 50 102 chr15 25261937 25262235 -76118286 - HAL1b LINE L1 -809 539 277 1897 137 4 14 chr15 25262235 25262538 -76117983 - AluSx SINE Alu 0 308 9 260 294 50 102 chr15 25262538 25262758 -76117763 - HAL1b LINE L1 -1071 277 47 3160 64 52 9 chr15 25263171 25263205 -76117316 - MLT2A1 LTR ERVL -6 438 407 497 89 25 0 chr15 25263205 25263284 -76117237 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 3160 64 52 9 chr15 25263284 25263669 -76116852 - MLT2A1 LTR ERVL -37 407 1 2245 64 0 44 chr15 25263936 25264280 -76116241 - AluY SINE Alu 0 331 1 368 164 15 0 chr15 25264680 25264747 -76115774 - L1MC4a LINE L1 -2035 5773 5706 956 205 252 20 chr15 25264752 25265054 -76115467 + MSTD LTR MaLR 1 372 -24 375 164 44 3 chr15 25265086 25265166 -76115355 + MSTD LTR MaLR 324 396 0 184 256 205 0 chr15 25265467 25265545 -76114976 - L2 LINE L2 -38 3234 3141 471 187 79 50 chr15 25268564 25268703 -76111818 + LTR45B LTR ERV1 342 484 -5 338 183 0 0 chr15 25269867 25269927 -76110594 + L2 LINE L2 3251 3310 -3 813 153 0 0 chr15 25270188 25270306 -76110215 + FLAM_C SINE Alu 1 118 -25 2249 112 7 0 chr15 25270563 25270867 -76109654 - AluSx SINE Alu -6 306 1 2667 180 13 42 chr15 25272135 25272206 -76108315 - MLT2B2 LTR ERVL 0 515 443 1985 119 51 14 chr15 25272206 25272500 -76108021 + AluSx SINE Alu 1 305 -7 2667 180 13 42 chr15 25272500 25272951 -76107570 - MLT2B2 LTR ERVL -72 443 8 2351 97 0 3 chr15 25273555 25273854 -76106667 + AluSg SINE Alu 1 298 -12 521 279 113 22 chr15 25274465 25274524 -76105997 - MIR SINE MIR -6 256 204 2272 104 0 3 chr15 25274524 25274823 -76105698 + AluY SINE Alu 1 298 -13 521 279 113 22 chr15 25274823 25274985 -76105536 - MIR SINE MIR -58 204 15 797 246 123 29 chr15 25275424 25275898 -76104623 - MLT2F LTR ERVL -23 640 98 1077 169 0 0 chr15 25275905 25276077 -76104444 + FRAM SINE Alu 1 172 -4 1171 53 0 0 chr15 25276521 25276654 -76103867 + AluY SINE Alu 1 133 -178 2595 55 3 3 chr15 25276655 25276964 -76103557 + AluY SINE Alu 1 309 -2 2470 187 118 42 chr15 25276973 25277598 -76102923 + L1MB1 LINE L1 5446 6118 -50 1228 102 0 18 chr15 25277699 25277865 -76102656 - AluSq SINE Alu -150 163 1 514 294 37 27 chr15 25278723 25278910 -76101611 - MIR SINE MIR -65 197 9 1606 73 9 18 chr15 25279177 25279395 -76101126 - AluSq SINE Alu -97 216 1 233 233 0 0 chr15 25279670 25279713 -76100808 + (CA)n Simple_repeat Simple_repeat 2 44 0 2580 215 92 42 chr15 25280012 25280229 -76100292 - L1MD2 LINE L1 -3 6750 6545 333 0 0 0 chr15 25280229 25280266 -76100255 + (TG)n Simple_repeat Simple_repeat 2 38 0 2580 215 92 42 chr15 25280266 25280754 -76099767 - L1MD2 LINE L1 -208 6545 5993 2011 128 3 0 chr15 25280754 25281050 -76099471 - AluSx SINE Alu -13 299 3 2580 215 92 42 chr15 25281050 25281195 -76099326 - L1MD2 LINE L1 -760 5993 5857 1579 122 50 4 chr15 25281205 25281467 -76099054 - AluSx SINE Alu -1 311 38 1281 217 97 26 chr15 25281485 25281587 -76098934 - L1MD2 LINE L1 -1794 4746 4653 2347 128 34 0 chr15 25281587 25281939 -76098582 + THE1B LTR MaLR 1 364 0 1281 217 97 26 chr15 25281939 25282219 -76098302 - L1MD2 LINE L1 -1887 4653 4337 554 250 61 0 chr15 25282333 25282529 -76097992 - L1MD2 LINE L1 -3003 3537 3330 4097 169 39 34 chr15 25282560 25282620 -76097901 - L1MB4 LINE L1 -41 6139 6081 2320 84 0 0 chr15 25282620 25282918 -76097603 + AluSc SINE Alu 1 298 -11 4097 169 39 34 chr15 25282918 25283733 -76096788 - L1MB4 LINE L1 -99 6081 5260 * 5303 238 89 65 chr15 25283727 25284110 -76096411 - L1MD2 LINE L1 -3351 3189 2816 1894 152 0 0 chr15 25284110 25284407 -76096114 - AluSx SINE Alu -15 297 1 5303 238 89 65 chr15 25284407 25285192 -76095329 - L1MD2 LINE L1 -3724 2816 2051 1978 139 3 0 chr15 25285192 25285501 -76095020 + AluSx SINE Alu 1 310 -2 5303 238 89 65 chr15 25285501 25286032 -76094489 - L1MD2 LINE L1 -4489 2051 1534 1928 109 20 7 chr15 25286032 25286326 -76094195 - AluSx SINE Alu -1 311 14 5303 238 89 65 chr15 25286326 25287689 -76092832 - L1MD2 LINE L1 -5006 1534 41 1744 132 0 29 chr15 25287857 25288137 -76092384 + AluSq SINE Alu 1 272 -41 2072 95 31 0 chr15 25289036 25289330 -76091191 + AluSx SINE Alu 1 303 -9 2208 152 40 71 chr15 25289800 25290279 -76090242 - MER21A LTR ERV1 -9 922 459 1490 64 9 36 chr15 25290281 25290500 -76090021 - AluY SINE Alu -98 213 1 1195 173 240 0 chr15 25290501 25290755 -76089766 - MER21B LTR ERV1 -548 315 1 265 280 51 42 chr15 25291800 25291918 -76088603 + MLT1H LTR MaLR 433 536 -13 416 264 42 0 chr15 25293045 25293189 -76087332 - MLT2E LTR ERVL -9 619 470 615 227 87 35 chr15 25293269 25293441 -76087080 - MLT2E LTR ERVL -318 310 130 575 245 125 35 chr15 25293606 25293806 -76086715 - MER20 DNA MER1_type -1 218 1 426 213 37 37 chr15 25293815 25293951 -76086570 + Charlie7 DNA MER1_type 2277 2412 -200 920 151 7 0 chr15 25293952 25294098 -76086423 + AluJo SINE Alu 1 147 -165 285 115 0 0 chr15 25294777 25294829 -76085692 + L1MB4 LINE L1 6129 6180 0 7002 225 29 32 chr15 25294875 25295115 -76085406 + L1M4 LINE L1 2964 3203 -2943 2285 100 0 3 chr15 25295115 25295426 -76085095 - AluSx SINE Alu -2 310 1 7002 225 29 32 chr15 25295426 25295733 -76084788 + L1M4 LINE L1 3203 3509 -2637 1497 178 44 17 chr15 25295733 25296062 -76084459 + AluJb SINE Alu 1 312 0 7002 225 29 32 chr15 25296062 25296907 -76083614 + L1M4 LINE L1 3509 4352 -1794 2106 124 0 0 chr15 25296907 25297214 -76083307 + AluSx SINE Alu 1 307 -5 7002 225 29 32 chr15 25297214 25297804 -76082717 + L1M4 LINE L1 4352 4942 -1204 376 244 11 22 chr15 25297819 25297909 -76082612 - L1MC4 LINE L1 -1339 6703 6615 328 221 11 63 chr15 25297879 25297974 -76082547 + L1MC4 LINE L1 6614 6703 -1339 * 2071 104 0 3 chr15 25297982 25298269 -76082252 - AluSc SINE Alu -23 286 1 3592 194 74 25 chr15 25298269 25298858 -76081663 + L1MB8 LINE L1 4891 5450 -728 2274 93 3 0 chr15 25298858 25299168 -76081353 + AluY SINE Alu 1 311 0 3592 194 74 25 chr15 25299168 25299793 -76080728 + L1MB8 LINE L1 5450 6168 -10 2107 103 3 28 chr15 25299878 25300241 -76080280 + AluSx SINE Alu 1 355 0 663 197 0 58 chr15 25300285 25300422 -76080099 + FLAM_C SINE Alu 2 130 -3 2102 81 3 11 chr15 25300906 25301216 -76079305 - AluY SINE Alu 0 308 1 1997 214 49 62 chr15 25301513 25302147 -76078374 - MLT1E2 LTR MaLR 0 626 1 293 289 68 55 chr15 25303529 25303764 -76076757 + MER110-int LTR ERV1 3160 3397 -3404 2136 104 16 3 chr15 25304013 25304320 -76076201 + AluSq SINE Alu 1 311 -2 324 70 0 0 chr15 25304407 25304450 -76076071 + (CA)n Simple_repeat Simple_repeat 2 44 0 2112 123 7 0 chr15 25304796 25305142 -76075379 + AluSx SINE Alu 1 348 0 2193 119 0 0 chr15 25305668 25305978 -76074543 + AluSx SINE Alu 1 310 -2 267 135 0 0 chr15 25306048 25306085 -76074436 + AluSg/x SINE Alu 142 178 -122 1297 166 11 42 chr15 25306130 25306395 -76074126 + AluJo SINE Alu 47 303 -9 388 339 49 36 chr15 25306401 25306708 -76073813 + MER110-int LTR ERV1 2426 2736 -1911 7151 195 66 37 chr15 25306776 25308348 -76072173 + MER52A LTR ERV1 136 1753 -2 189 0 0 0 chr15 25308502 25308523 -76071998 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 2115 128 32 35 chr15 25308754 25309130 -76071391 + THE1C LTR MaLR 1 375 0 265 333 9 9 chr15 25310093 25310207 -76070314 + MER70-int LTR ERVL 4552 4665 -358 1606 242 69 10 chr15 25310560 25311083 -76069438 + L1MCc LINE L1 1002 1571 -4851 1864 149 7 0 chr15 25311103 25311404 -76069117 + AluSx SINE Alu 3 305 -7 676 244 21 50 chr15 25311418 25311587 -76068934 + L1MCc LINE L1 2279 2441 -4681 1747 175 0 3 chr15 25311587 25311884 -76068637 - AluSx SINE Alu -16 296 1 676 244 21 50 chr15 25311884 25311952 -76068569 + L1MCc LINE L1 2441 2509 -4613 * 1527 188 39 36 chr15 25311930 25312314 -76068207 + L1ME1 LINE L1 6165 6549 -2241 456 141 81 101 chr15 25312314 25312413 -76068108 - LTR12 LTR ERV1 -132 582 313 1237 155 0 48 chr15 25312413 25312684 -76067837 - AluY SINE Alu -20 291 34 1502 144 60 173 chr15 25312713 25313165 -76067356 - LTR12 LTR ERV1 -313 401 1 928 207 97 94 chr15 25313228 25313415 -76067106 + L1ME1 LINE L1 6574 6759 -202 2414 115 13 31 chr15 25313415 25313797 -76066724 + THE1C LTR MaLR 1 375 0 928 207 97 94 chr15 25313797 25313991 -76066530 + L1ME1 LINE L1 6759 6956 -5 2071 112 0 3 chr15 25314546 25314842 -76065679 + AluY SINE Alu 1 295 -16 564 249 104 37 chr15 25314878 25315119 -76065402 - L1ME3A LINE L1 -99 6071 5815 274 128 0 0 chr15 25315220 25315259 -76065262 - MLT1B LTR MaLR -17 373 335 762 261 125 46 chr15 25315321 25315624 -76064897 - MLT1B LTR MaLR -63 327 1 231 146 0 24 chr15 25315627 25315668 -76064853 - L1MC4 LINE L1 -144 7898 7859 3374 222 61 13 chr15 25315734 25316840 -76063681 - L1M4 LINE L1 -2937 3707 2544 2426 211 80 88 chr15 25316973 25317720 -76062801 - L1M4 LINE L1 -4608 2038 1286 1848 128 10 10 chr15 25317720 25318017 -76062504 + AluSx SINE Alu 1 297 -15 2426 211 80 88 chr15 25318017 25318385 -76062136 - L1M4 LINE L1 -5360 1286 907 195 100 0 0 chr15 25318385 25318415 -76062106 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2426 211 80 88 chr15 25318415 25318598 -76061923 - L1M4 LINE L1 -5739 907 724 1106 190 125 54 chr15 25318662 25318887 -76061634 + MER2 DNA MER2_type 2 210 -135 1880 126 17 3 chr15 25318887 25319188 -76061333 - L1MA3 LINE L1 -1 6304 6000 1106 190 125 54 chr15 25319188 25319211 -76061310 + MER2 DNA MER2_type 210 230 -115 1804 150 0 0 chr15 25319211 25319498 -76061023 - AluSx SINE Alu -25 287 1 1106 190 125 54 chr15 25319498 25319543 -76060978 + MER2 DNA MER2_type 230 317 -28 426 254 49 60 chr15 25319576 25319761 -76060760 - L1M4 LINE L1 -5877 665 483 362 297 114 10 chr15 25319865 25320067 -76060454 - L1M4 LINE L1 -6304 238 16 229 239 73 73 chr15 25320640 25320654 -76059867 - MIR SINE MIR -68 140 127 1505 121 14 68 chr15 25320654 25320746 -76059775 + AluJb SINE Alu 36 131 -181 2077 112 0 10 chr15 25320746 25321040 -76059481 - AluSq SINE Alu -22 291 1 1505 121 14 68 chr15 25321040 25321227 -76059294 + AluJb SINE Alu 131 300 -12 229 239 73 73 chr15 25321227 25321321 -76059200 - MIR SINE MIR -80 128 32 217 306 58 50 chr15 25322168 25322289 -76058232 + MIR SINE MIR 98 219 -43 1786 146 16 177 chr15 25324182 25324696 -76055825 - LTR12 LTR ERV1 -231 483 53 263 231 0 0 chr15 25324696 25324748 -76055773 - LTR30 LTR ERV1 -670 52 1 1916 96 30 46 chr15 25326152 25326455 -76054066 - AluSx SINE Alu -14 298 1 1062 223 97 19 chr15 25326517 25326836 -76053685 + MER2 DNA MER2_type 1 344 0 303 194 32 54 chr15 25326860 25326953 -76053568 - L1MC4 LINE L1 -88 7954 7864 323 353 24 12 chr15 25326982 25327234 -76053287 + L1ME LINE L1 4886 5140 -1006 228 159 0 23 chr15 25327246 25327259 -76053262 + (CATA)n Simple_repeat Simple_repeat 2 14 -30 1514 185 14 11 chr15 25327259 25327546 -76052975 + AluJb SINE Alu 1 288 -24 228 159 0 23 chr15 25327546 25327576 -76052945 + (CATA)n Simple_repeat Simple_repeat 14 44 0 1930 174 36 0 chr15 25327630 25327964 -76052557 - MER7A DNA MER2_type -1 345 2 269 299 65 90 chr15 25328123 25328477 -76052044 + L1ME LINE L1 5367 5711 -410 1006 176 150 49 chr15 25328511 25328778 -76051743 - MER66A LTR ERV1 -1 477 184 369 147 46 67 chr15 25328776 25328885 -76051636 - MER41B LTR ERV1 -269 323 191 * 393 149 75 0 chr15 25329198 25329265 -76051256 + MLT1A2 LTR MaLR 1 72 -302 472 191 0 22 chr15 25329456 25329545 -76050976 + MER72 LTR ERV1 370 456 -266 356 182 94 54 chr15 25329668 25329806 -76050715 + LTR45B LTR ERV1 351 783 0 3073 102 93 9 chr15 25329808 25330268 -76050253 + Charlie3 DNA MER1_type 2 500 -2210 * 3424 92 18 2 chr15 25330262 25330720 -76049801 + Charlie3 DNA MER1_type 2242 2706 -4 441 258 48 0 chr15 25330721 25330845 -76049676 + MLT1A2 LTR MaLR 62 191 -183 1067 79 13 26 chr15 25331520 25331672 -76048849 + AluSq/x SINE Alu 1 150 -163 532 95 0 0 chr15 25331673 25331747 -76048774 + Alu SINE Alu 222 295 -17 330 221 75 80 chr15 25333838 25334051 -76046470 + L1ME1 LINE L1 4943 5154 -992 1840 198 101 13 chr15 25334058 25334532 -76045989 + L1ME1 LINE L1 5648 6163 -3 270 81 0 0 chr15 25335651 25335688 -76044833 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 266 248 99 30 chr15 25336971 25337072 -76043449 - MER94 DNA DNA -23 111 4 642 190 224 6 chr15 25337419 25337593 -76042928 + MER20 DNA MER1_type 2 213 -6 2041 93 43 7 chr15 25338097 25338398 -76042123 + AluSx SINE Alu 1 312 0 1977 116 0 17 chr15 25338659 25338953 -76041568 - AluSx SINE Alu -23 289 1 888 194 164 64 chr15 25339061 25339391 -76041130 + MLT1A1 LTR MaLR 3 365 0 1449 180 0 4 chr15 25339608 25339847 -76040674 - MER8 DNA MER2_type 0 239 2 1151 126 0 0 chr15 25340040 25340214 -76040307 - AluSg/x SINE Alu 0 310 137 3636 44 0 0 chr15 25340314 25340749 -76039772 + L1PA5 LINE L1 5716 6150 -4 1284 94 0 0 chr15 25340752 25340922 -76039599 + AluSp SINE Alu 130 299 -14 232 236 45 0 chr15 25341376 25341465 -76039056 + MLT1J1 LTR MaLR 222 314 -132 2140 99 3 10 chr15 25342730 25343033 -76037488 - AluSx SINE Alu -11 301 1 718 279 276 17 chr15 25343068 25343598 -76036923 + L2 LINE L2 2309 2975 -339 1798 218 57 14 chr15 25343636 25344054 -76036467 - MLT1C LTR MaLR -5 462 27 2337 84 0 3 chr15 25344055 25344365 -76036156 - AluY SINE Alu -2 309 1 2275 88 0 13 chr15 25344365 25344673 -76035848 - AluSq SINE Alu -9 304 1 1492 174 33 10 chr15 25345210 25345509 -76035012 + L1MB7 LINE L1 5562 5867 -317 886 235 177 18 chr15 25345509 25345895 -76034626 + LTR48B LTR ERV1 1 409 -213 1206 133 0 10 chr15 25345919 25346114 -76034407 + AluSg/x SINE Alu 117 309 -1 2219 115 21 24 chr15 25346115 25346455 -76034066 + MSTC LTR MaLR 88 426 -2 248 250 32 97 chr15 25347485 25347609 -76032912 - MER69A DNA AcHobo -19 158 43 2809 215 82 46 chr15 25347694 25348461 -76032060 + MER21B LTR ERV1 12 806 -57 2088 122 0 3 chr15 25348860 25349163 -76031358 - AluSx SINE Alu -8 304 3 1312 185 13 21 chr15 25349457 25349695 -76030826 - LTR8 LTR ERV1 0 691 456 3511 120 78 32 chr15 25349703 25350302 -76030219 - MER41B LTR ERV1 -8 627 1 2319 121 61 93 chr15 25350302 25350771 -76029750 - LTR8 LTR ERV1 -232 459 6 2281 84 0 0 chr15 25351136 25351444 -76029077 - AluSg SINE Alu -2 308 1 191 121 15 76 chr15 25351589 25351655 -76028866 + GA-rich Low_complexity Low_complexity 2 63 0 1310 113 4 84 chr15 25352343 25352617 -76027904 + AluJb SINE Alu 41 292 -20 2283 73 3 7 chr15 25353193 25353496 -76027025 + AluSp SINE Alu 1 302 -11 874 126 0 15 chr15 25353496 25353623 -76026898 - FLAM_C SINE Alu -175 127 1 292 200 179 83 chr15 25355562 25355707 -76024814 - MLT1K LTR MaLR -111 477 319 2080 105 0 3 chr15 25356057 25356351 -76024170 + AluSx SINE Alu 1 293 -19 2207 80 7 0 chr15 25356601 25356888 -76023633 - AluSx SINE Alu -23 289 1 945 216 158 18 chr15 25357374 25357647 -76022874 - MER33 DNA MER1_type -2 322 12 2108 119 0 10 chr15 25358867 25359177 -76021344 - AluSg SINE Alu -2 308 2 648 113 66 28 chr15 25359332 25359438 -76021083 + MER46A DNA MER2_type 1 110 -126 378 184 0 0 chr15 25359439 25359515 -76021006 + MER46A DNA MER2_type 158 233 -3 404 211 59 125 chr15 25359535 25359615 -76020906 + MER104 DNA Tc2 35 102 -1796 1804 140 21 0 chr15 25359615 25359900 -76020621 - AluSx SINE Alu -21 291 1 404 211 59 125 chr15 25359900 25359971 -76020550 + MER104 DNA Tc2 102 176 -4 2066 110 13 10 chr15 25360861 25361162 -76019359 + AluSx SINE Alu 1 302 -10 363 303 68 8 chr15 25361162 25361294 -76019227 + MIR SINE MIR 24 163 -99 527 257 33 56 chr15 25362259 25362473 -76018048 + L1ME LINE L1 5366 5574 -590 956 241 111 6 chr15 25362552 25362808 -76017713 + L1M4 LINE L1 3878 4178 -1968 2170 107 7 3 chr15 25362808 25363116 -76017405 + AluSx SINE Alu 1 309 -3 956 241 111 6 chr15 25363116 25363191 -76017330 + L1M4 LINE L1 4178 4244 -1902 2041 122 0 3 chr15 25364316 25364612 -76015909 - AluSx SINE Alu -17 295 1 601 247 80 7 chr15 25364684 25364834 -76015687 - MER58B DNA MER1_type -1 340 180 263 241 115 23 chr15 25367009 25367096 -76013425 - L2 LINE L2 -1 3312 3218 2308 69 3 0 chr15 25367191 25367482 -76013039 - AluY SINE Alu -19 292 1 2319 79 0 3 chr15 25367482 25367785 -76012736 - AluY SINE Alu -9 302 1 498 202 97 24 chr15 25368581 25368705 -76011816 + MLT1E3 LTR MaLR 90 222 -402 294 130 0 0 chr15 25368916 25368962 -76011559 - MLT2F LTR ERVL -2 661 616 278 227 15 15 chr15 25369027 25369093 -76011428 + MIR3 SINE MIR 7 72 -136 23 0 0 0 chr15 25369197 25369220 -76011301 + AT_rich Low_complexity Low_complexity 1 23 0 227 257 121 7 chr15 25370409 25370547 -76009974 + MIR SINE MIR 20 179 -65 180 0 0 0 chr15 25371069 25371089 -76009432 + (A)n Simple_repeat Simple_repeat 1 20 0 2277 109 120 5 chr15 25374133 25374517 -76006004 + MSTA LTR MaLR 1 428 0 9476 138 11 42 chr15 25374517 25376148 -76004373 + MSTA-int LTR MaLR 1 1580 0 2078 137 129 5 chr15 25376148 25376529 -76003992 + MSTA LTR MaLR 1 428 0 181 0 0 0 chr15 25379091 25379111 -76001410 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1998 113 0 0 chr15 25379111 25379377 -76001144 - AluSx SINE Alu -30 282 17 35 54 0 0 chr15 25379704 25379760 -76000761 + AT_rich Low_complexity Low_complexity 1 56 0 2321 66 7 7 chr15 25379996 25380299 -76000222 - AluY SINE Alu -8 303 1 1901 165 0 13 chr15 25380916 25381232 -75999289 + AluSq SINE Alu 2 313 0 23 0 0 0 chr15 25381410 25381433 -75999088 + AT_rich Low_complexity Low_complexity 1 23 0 2267 80 37 10 chr15 25381703 25382003 -75998518 - AluSp SINE Alu -5 308 1 1849 160 0 17 chr15 25382756 25383082 -75997439 + AluSx SINE Alu 1 321 0 234 218 13 51 chr15 25383770 25383848 -75996673 - MER20 DNA MER1_type 0 219 145 259 159 0 0 chr15 25383974 25384018 -75996503 + MER96B DNA MER1_type? 191 234 -183 985 147 0 7 chr15 25384849 25385028 -75995493 + AluSg/x SINE Alu 132 309 0 2417 63 0 13 chr15 25385237 25385538 -75994983 + AluY SINE Alu 1 297 -14 1565 188 43 0 chr15 25386001 25386120 -75994401 + AluJo SINE Alu 3 115 -197 234 0 0 0 chr15 25386120 25386146 -75994375 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1565 188 43 0 chr15 25386146 25386308 -75994213 + AluJo SINE Alu 115 296 -16 234 250 42 0 chr15 25387815 25387887 -75992634 + MIR SINE MIR 117 191 -71 444 213 213 7 chr15 25389161 25389316 -75991205 - MIR SINE MIR 0 262 76 687 188 43 120 chr15 25389373 25389607 -75990914 + MER20 DNA MER1_type 1 216 -3 2360 91 0 7 chr15 25390242 25390539 -75989982 - AluSx SINE Alu -17 295 1 1903 172 13 0 chr15 25391060 25391368 -75989153 + AluJb SINE Alu 1 312 0 186 43 0 0 chr15 25394104 25394127 -75986394 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1510 186 0 66 chr15 25394498 25394831 -75985690 + AluJo SINE Alu 1 311 -1 2476 56 0 7 chr15 25395197 25395499 -75985022 - AluY SINE Alu -11 300 1 1297 60 72 0 chr15 25395744 25395910 -75984611 - AluY SINE Alu -14 297 120 1034 158 82 0 chr15 25396038 25396234 -75984287 + MER20 DNA MER1_type 8 219 0 1182 168 40 128 chr15 25397169 25397490 -75983031 + AluJo SINE Alu 1 293 -9 447 272 106 57 chr15 25398048 25398413 -75982108 + L1ME LINE L1 4637 5025 -1121 1612 190 7 23 chr15 25398675 25398975 -75981546 + AluJo SINE Alu 4 298 -14 269 308 111 31 chr15 25398995 25399127 -75981394 + L1ME LINE L1 5310 5430 -691 2266 103 0 0 chr15 25399127 25399418 -75981103 + AluSc SINE Alu 1 291 -18 269 308 111 31 chr15 25399418 25399700 -75980821 + L1ME LINE L1 5430 5757 -364 245 280 116 37 chr15 25400060 25400249 -75980272 + L1M4 LINE L1 3661 3864 -2282 35 41 0 0 chr15 25401148 25401197 -75979324 + AT_rich Low_complexity Low_complexity 1 49 0 1048 210 113 0 chr15 25401758 25402049 -75978472 - MER33 DNA MER1_type 0 324 1 1909 149 13 7 chr15 25402244 25402552 -75977969 - AluJb SINE Alu -2 310 1 336 48 0 0 chr15 25402602 25402644 -75977877 + (TG)n Simple_repeat Simple_repeat 1 42 0 725 198 23 109 chr15 25403351 25403520 -75977001 + LTR41 LTR ERVL 482 615 -158 2133 114 3 16 chr15 25403520 25403689 -75976832 - AluSx SINE Alu -10 302 137 2304 65 14 3 chr15 25403689 25403982 -75976539 - AluY SINE Alu -15 296 1 2133 114 3 16 chr15 25403982 25404118 -75976403 - AluSx SINE Alu -175 137 1 725 198 23 109 chr15 25404118 25404251 -75976270 + LTR41 LTR ERVL 615 758 -15 965 190 0 22 chr15 25405596 25405775 -75974746 - AluJb SINE Alu -4 308 134 2335 99 0 3 chr15 25405781 25406083 -75974438 - AluSx SINE Alu -11 301 1 362 312 163 47 chr15 25406502 25406864 -75973657 + L2 LINE L2 2824 3227 -86 2548 59 0 3 chr15 25406881 25407188 -75973333 + AluY SINE Alu 1 306 -5 3378 89 35 8 chr15 25407705 25408213 -75972308 + L1PA14 LINE L1 5640 6161 0 1152 143 107 14 chr15 25408321 25408537 -75971984 - MER46A DNA MER2_type 0 236 1 1622 140 104 3 chr15 25408696 25409003 -75971518 + MER7A DNA MER2_type 11 346 0 244 231 123 0 chr15 25410159 25410224 -75970297 - MER58A DNA MER1_type -32 75 3 292 271 146 0 chr15 25410745 25410841 -75969680 - MIR SINE MIR -125 137 28 2147 121 39 100 chr15 25411498 25411960 -75968561 + Tigger2a DNA MER2_type 1 434 0 4587 123 36 10 chr15 25413010 25413789 -75966732 - L1MA9 LINE L1 -2 6310 5512 2275 101 0 3 chr15 25414058 25414356 -75966165 - AluSx SINE Alu -15 297 1 693 183 111 7 chr15 25414506 25414659 -75965862 + MER58A DNA MER1_type 47 215 -9 472 249 30 20 chr15 25414898 25415099 -75965422 - L1MA9 LINE L1 -817 5329 5127 * 4718 223 73 54 chr15 25415094 25415232 -75965289 - L1M4 LINE L1 -869 5277 5143 2060 142 0 3 chr15 25415232 25415534 -75964987 + AluSx SINE Alu 1 301 -11 4718 223 73 54 chr15 25415534 25417218 -75963303 - L1M4 LINE L1 -1003 5143 3493 207 0 0 0 chr15 25417218 25417241 -75963280 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1970 134 24 0 chr15 25417250 25417540 -75962981 - AluSx SINE Alu -15 297 1 4718 223 73 54 chr15 25417540 25417901 -75962620 - L1M4 LINE L1 -2660 3486 3041 7898 158 59 34 chr15 25418574 25418869 -75961652 + L1MA3 LINE L1 3505 3791 -2514 2295 130 80 8 chr15 25418869 25419268 -75961253 + MSTA LTR MaLR 1 428 0 7898 158 59 34 chr15 25419268 25419812 -75960709 + L1MA3 LINE L1 3791 4320 -1985 180 0 0 0 chr15 25419812 25419832 -75960689 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 7898 158 59 34 chr15 25419832 25420989 -75959532 + L1MA3 LINE L1 4320 5447 -858 2025 89 96 0 chr15 25420989 25421271 -75959250 + AluY SINE Alu 1 309 -2 7898 158 59 34 chr15 25421271 25421354 -75959167 + L1MA3 LINE L1 5447 5526 -779 2047 115 10 7 chr15 25421354 25421649 -75958872 + AluSx SINE Alu 1 296 -16 7898 158 59 34 chr15 25421649 25422282 -75958239 + L1MA3 LINE L1 5526 6305 0 716 179 33 26 chr15 25422458 25422609 -75957912 - MER58B DNA MER1_type -3 338 187 203 331 16 33 chr15 25422689 25422810 -75957711 - MER5A DNA MER1_type -68 121 3 290 244 25 101 chr15 25423143 25423262 -75957259 - L2 LINE L2 0 3313 3204 528 195 70 38 chr15 25423476 25423661 -75956860 - MER33 DNA MER1_type 0 363 173 258 264 28 0 chr15 25423682 25423754 -75956767 - MER33 DNA MER1_type -241 83 10 1278 204 23 3 chr15 25424092 25424396 -75956125 + L1MB8 LINE L1 4867 5176 -970 677 195 0 23 chr15 25426247 25426375 -75954146 - FLAM_A SINE Alu -8 125 1 2194 108 7 7 chr15 25426961 25427258 -75953263 + AluSg SINE Alu 1 297 -13 280 252 148 9 chr15 25427499 25427614 -75952907 - L2 LINE L2 -1 3312 3182 639 311 153 53 chr15 25427971 25428787 -75951734 - L2 LINE L2 -666 2648 1751 1503 203 0 7 chr15 25429081 25429362 -75951159 + AluJb SINE Alu 1 279 -33 246 32 0 0 chr15 25429362 25429393 -75951128 + (CAA)n Simple_repeat Simple_repeat 2 32 0 251 253 92 23 chr15 25432835 25432922 -75947599 + L1MB8 LINE L1 5562 5654 -467 4653 122 98 61 chr15 25433076 25433637 -75946884 + Tigger3b DNA MER2_type 1 540 -2488 1673 153 51 0 chr15 25433637 25433912 -75946609 + AluSx SINE Alu 1 289 -23 1690 68 135 41 chr15 25433916 25434182 -75946339 + AluY SINE Alu 21 311 0 4653 122 98 61 chr15 25434182 25434641 -75945880 + Tigger3b DNA MER2_type 542 1064 -167 1567 179 57 3 chr15 25434645 25434946 -75945575 - MER7A DNA MER2_type -31 315 1 2498 71 0 0 chr15 25434996 25435293 -75945228 + AluY SINE Alu 1 297 -14 508 264 110 72 chr15 25435869 25436241 -75944280 - MER113 DNA MER1_type? -1 520 123 1904 164 0 10 chr15 25436241 25436539 -75943982 - AluJo SINE Alu -17 295 1 508 264 110 72 chr15 25436539 25436667 -75943854 - MER113 DNA MER1_type? -398 123 1 1561 196 66 17 chr15 25437828 25438236 -75942285 + L1MB8 LINE L1 5741 6168 -10 3815 188 21 7 chr15 25438374 25439097 -75941424 + MER44D DNA MER2_type 1 605 0 390 316 70 41 chr15 25439244 25439801 -75940720 + L1M4 LINE L1 3370 3942 -2204 3195 244 58 24 chr15 25439854 25440918 -75939603 - Charlie1a DNA MER1_type -349 1106 7 22 0 0 0 chr15 25440953 25440975 -75939546 + AT_rich Low_complexity Low_complexity 1 22 0 722 208 19 42 chr15 25441112 25441328 -75939193 + L1MC/D LINE L1 5533 5743 -2065 303 293 46 69 chr15 25441687 25441861 -75938660 + MER5B DNA MER1_type 7 176 -2 231 377 9 9 chr15 25442201 25442315 -75938206 + L2 LINE L2 2948 3061 -211 1730 244 17 28 chr15 25442541 25443013 -75937508 + LTR31 LTR ERV1 115 581 -38 243 0 0 0 chr15 25443414 25443441 -75937080 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3388 144 17 6 chr15 25443535 25444056 -75936465 - MER1A DNA MER1_type 0 527 1 6078 174 32 8 chr15 25444377 25445673 -75934848 + L1PA13 LINE L1 3049 4375 -1771 4763 110 80 25 chr15 25445674 25446463 -75934058 + L1PA13 LINE L1 4646 5390 -773 2273 113 0 0 chr15 25446463 25446763 -75933758 + AluSp SINE Alu 1 300 -13 4763 110 80 25 chr15 25446763 25447430 -75933091 + L1PA13 LINE L1 5390 6152 -11 2136 104 13 13 chr15 25447773 25448071 -75932450 - AluSq SINE Alu -15 298 1 372 284 183 41 chr15 25448071 25448339 -75932182 + HAL1b LINE L1 493 798 -550 514 204 120 7 chr15 25448799 25448941 -75931580 + MER58B DNA MER1_type 181 338 -3 236 319 29 0 chr15 25449269 25449338 -75931183 - MIR3 SINE MIR -10 198 128 * 255 298 220 21 chr15 25449334 25449475 -75931046 + MIR3 SINE MIR 36 204 -4 1708 168 14 20 chr15 25449976 25450268 -75930253 - AluJo SINE Alu -17 295 6 469 121 61 0 chr15 25450581 25450680 -75929841 - L1MB8 LINE L1 -3 6175 6071 1032 221 8 0 chr15 25450685 25450934 -75929587 + L1M4 LINE L1 4907 5157 -989 * 3323 180 78 4 chr15 25450931 25451781 -75928740 - L1MB8 LINE L1 -115 6063 5153 2333 211 104 42 chr15 25451943 25452107 -75928414 + L1ME1 LINE L1 5287 5439 -727 1956 115 11 0 chr15 25452107 25452377 -75928144 - AluSx SINE Alu -38 274 2 2333 211 104 42 chr15 25452377 25452417 -75928104 + L1ME1 LINE L1 5439 5475 -691 1248 171 54 0 chr15 25452417 25452639 -75927882 - MER46A DNA MER2_type 0 236 3 2333 211 104 42 chr15 25452639 25453262 -75927259 + L1ME1 LINE L1 5475 6166 0 21 57 0 0 chr15 25453270 25453305 -75927216 + AT_rich Low_complexity Low_complexity 1 35 0 2412 67 0 7 chr15 25453524 25453822 -75926699 - AluY SINE Alu -15 296 1 21 0 0 0 chr15 25453831 25453852 -75926669 + AT_rich Low_complexity Low_complexity 1 21 0 226 359 31 31 chr15 25454133 25454261 -75926260 - MIR SINE MIR -119 143 16 2712 7 0 0 chr15 25455571 25455868 -75924653 - AluYa5 SINE Alu -14 297 1 1353 67 130 24 chr15 25455890 25456098 -75924423 + MER30 DNA MER1_type 1 230 0 1673 139 139 9 chr15 25457368 25457692 -75922829 + MER47A DNA MER2_type 1 366 0 249 303 0 50 chr15 25459048 25459147 -75921374 + MIR3 SINE MIR 115 208 0 207 0 0 0 chr15 25459637 25459660 -75920861 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 290 110 82 55 chr15 25459760 25459833 -75920688 - MADE1 DNA Mariner 0 80 6 184 306 122 20 chr15 25460701 25460799 -75919722 - L2 LINE L2 -1884 1430 1323 195 171 49 49 chr15 25460805 25460846 -75919675 - L2 LINE L2 -73 3240 3200 500 204 12 126 chr15 25461595 25461850 -75918671 + L1MC4a LINE L1 6044 6269 -1539 24 67 0 0 chr15 25461863 25461908 -75918613 + AT_rich Low_complexity Low_complexity 1 45 0 2149 129 7 0 chr15 25462093 25462396 -75918125 + AluSx SINE Alu 1 305 -7 435 266 38 22 chr15 25462396 25462580 -75917941 + L1ME3A LINE L1 5939 6125 -45 1074 196 28 40 chr15 25462728 25463055 -75917466 + L1MC5 LINE L1 7003 7325 -636 550 173 4 9 chr15 25463055 25463165 -75917356 + MER33 DNA MER1_type 1 100 -88 447 172 69 28 chr15 25463223 25463368 -75917153 + MER33 DNA MER1_type 88 238 -86 239 224 86 9 chr15 25463420 25463536 -75916985 + L1MC5 LINE L1 7344 7468 -493 2132 105 3 7 chr15 25463671 25463967 -75916554 + AluSq SINE Alu 1 295 -18 672 182 0 0 chr15 25464138 25464259 -75916262 - MER46A DNA MER2_type -94 142 22 474 246 41 35 chr15 25464281 25464452 -75916069 + L1MC5 LINE L1 7753 7924 -37 194 293 24 30 chr15 25464837 25464951 -75915570 - L2 LINE L2 -248 3024 2914 426 317 55 35 chr15 25464956 25465155 -75915366 - L2 LINE L2 -2 3311 3109 273 294 66 116 chr15 25465201 25465579 -75914942 - L2 LINE L2 -411 2903 2545 288 0 0 0 chr15 25465967 25465999 -75914522 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 183 80 0 0 chr15 25466030 25466055 -75914466 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 242 215 75 47 chr15 25466357 25466464 -75914057 + L1ME3A LINE L1 6061 6170 0 411 268 87 22 chr15 25466488 25466626 -75913895 + Charlie8 DNA MER1_type 108 254 -2163 489 236 108 32 chr15 25466780 25466937 -75913584 + MIR SINE MIR 78 246 -16 468 207 61 61 chr15 25467554 25467718 -75912803 + L1ME3A LINE L1 5787 5950 -220 448 266 169 0 chr15 25467847 25468001 -75912520 + L2 LINE L2 3127 3306 -7 1802 132 0 59 chr15 25470120 25470424 -75910097 - AluSx SINE Alu -13 299 14 6431 67 5 46 chr15 25470897 25472131 -75908390 + L1PA8 LINE L1 4970 6166 -6 1878 101 36 42 chr15 25472607 25472913 -75907608 - AluSg SINE Alu -6 304 1 1888 111 0 4 chr15 25472916 25473177 -75907344 - AluSx SINE Alu -3 309 50 504 257 138 13 chr15 25473433 25473585 -75906936 + MIR SINE MIR 66 236 -26 266 314 101 6 chr15 25473948 25474178 -75906343 + L1ME LINE L1 5561 5647 -474 184 214 48 0 chr15 25474321 25474363 -75906158 + MIR SINE MIR 198 241 -21 512 312 136 55 chr15 25475695 25476619 -75903902 + L1M2 LINE L1 388 1295 -5554 247 131 0 33 chr15 25476620 25476681 -75903840 + (CGGGG)n Simple_repeat Simple_repeat 1 59 0 1540 94 5 0 chr15 25477978 25478179 -75902342 + AluSq SINE Alu 84 285 -28 324 0 0 0 chr15 25478179 25478215 -75902306 + (CAT)n Simple_repeat Simple_repeat 2 37 0 564 128 53 0 chr15 25478215 25478309 -75902212 + FLAM_C SINE Alu 31 129 -14 22 35 0 0 chr15 25478672 25478701 -75901820 + AT_rich Low_complexity Low_complexity 1 29 0 304 200 0 0 chr15 25479771 25479841 -75900680 + L1MB3 LINE L1 6113 6182 -1 624 250 58 16 chr15 25480497 25480685 -75899836 + MER45C DNA AcHobo 17 212 -741 378 239 110 9 chr15 25480888 25480997 -75899524 + MER45C DNA AcHobo 470 589 -364 1359 168 72 0 chr15 25481282 25481544 -75898977 + MER45B DNA AcHobo 713 993 -47 331 294 155 46 chr15 25481983 25482381 -75898140 - L1MC4a LINE L1 -297 5824 5433 2114 118 3 0 chr15 25482469 25482638 -75897883 - AluSx SINE Alu -14 298 126 180 0 0 0 chr15 25482638 25482658 -75897863 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2114 118 3 0 chr15 25482658 25482785 -75897736 - AluSx SINE Alu -186 126 1 775 171 105 7 chr15 25482838 25482990 -75897531 - L1MD3 LINE L1 -15 7980 7814 195 42 0 0 chr15 25483362 25483386 -75897135 + (A)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr15 25483737 25483772 -75896749 + AT_rich Low_complexity Low_complexity 1 35 0 30 45 0 0 chr15 25484042 25484086 -75896435 + AT_rich Low_complexity Low_complexity 1 44 0 21 82 0 0 chr15 25484202 25484251 -75896270 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr15 25484412 25484434 -75896087 + AT_rich Low_complexity Low_complexity 1 22 0 1072 238 142 114 chr15 25484446 25485682 -75894839 + L1MC5 LINE L1 6637 7906 -55 665 286 172 29 chr15 25485760 25486236 -75894285 + MLT1H LTR MaLR 6 549 0 1981 146 10 3 chr15 25487132 25487427 -75893094 - AluSx SINE Alu -15 297 1 21 57 0 0 chr15 25487574 25487609 -75892912 + AT_rich Low_complexity Low_complexity 1 35 0 2493 50 7 0 chr15 25487609 25487906 -75892615 - AluY SINE Alu -12 299 1 2100 106 7 7 chr15 25487952 25488245 -75892276 - AluSg1 SINE Alu -16 293 1 992 104 0 7 chr15 25489248 25489392 -75891129 + FRAM SINE Alu 20 162 -14 318 67 0 0 chr15 25489612 25489657 -75890864 + (GA)n Simple_repeat Simple_repeat 1 45 0 2251 75 14 0 chr15 25490000 25490294 -75890227 - AluY SINE Alu -13 298 1 1250 176 42 139 chr15 25490364 25490768 -75889753 + MLT1A1 LTR MaLR 1 365 0 2045 94 4 7 chr15 25491028 25491303 -75889218 + AluSp SINE Alu 29 302 -11 4261 204 62 44 chr15 25491822 25491866 -75888655 - L1MD2 LINE L1 -9 6350 6308 2094 158 0 0 chr15 25491866 25492170 -75888351 + AluSx SINE Alu 1 304 -8 4261 204 62 44 chr15 25492170 25492328 -75888193 - L1MD2 LINE L1 -51 6308 6154 251 27 0 27 chr15 25492328 25492365 -75888156 + (TG)n Simple_repeat Simple_repeat 1 36 0 4261 204 62 44 chr15 25492365 25492716 -75887805 - L1MD2 LINE L1 -205 6154 5811 2552 62 0 0 chr15 25492716 25493021 -75887500 - AluY SINE Alu -6 305 1 4261 204 62 44 chr15 25493021 25493083 -75887438 - L1MD2 LINE L1 -548 5811 5752 1728 179 13 19 chr15 25493083 25493396 -75887125 + AluJo SINE Alu 1 311 -1 4261 204 62 44 chr15 25493396 25494085 -75886436 - L1MD2 LINE L1 -607 5752 5022 231 337 33 0 chr15 25494479 25494571 -75885950 - L2 LINE L2 -40 3273 3179 238 113 19 38 chr15 25495423 25495476 -75885045 + CT-rich Low_complexity Low_complexity 1 52 0 3636 147 21 20 chr15 25495809 25496413 -75884108 - MER6A DNA MER2_type 0 605 1 2522 70 3 3 chr15 25496898 25497211 -75883310 - AluSp SINE Alu 0 313 1 518 259 84 93 chr15 25497303 25497732 -75882789 - L2 LINE L2 -70 3243 2819 340 145 4 49 chr15 25497766 25497821 -75882700 - Alu SINE Alu -1 301 259 1834 107 52 0 chr15 25497821 25498091 -75882430 - AluSx SINE Alu -28 284 1 340 145 4 49 chr15 25498091 25498111 -75882410 - Alu SINE Alu -43 259 240 1838 275 104 14 chr15 25498118 25498817 -75881704 - L2 LINE L2 -628 2686 1925 1976 99 10 7 chr15 25499247 25499540 -75880981 + AluSc SINE Alu 1 294 -15 2298 70 0 3 chr15 25500365 25500675 -75879846 + AluY SINE Alu 1 309 0 216 205 0 0 chr15 25500746 25500785 -75879736 - L2 LINE L2 -10 3303 3265 1348 145 9 14 chr15 25500813 25501034 -75879487 - AluJb SINE Alu -3 309 90 2128 201 37 80 chr15 25501036 25501225 -75879296 - L1M4 LINE L1 -2937 3209 3014 2296 97 0 0 chr15 25501225 25501525 -75878996 + AluY SINE Alu 1 300 -11 2128 201 37 80 chr15 25501525 25502140 -75878381 - L1M4 LINE L1 -3132 3014 2439 2364 91 3 0 chr15 25502301 25502599 -75877922 + AluSc SINE Alu 1 299 -10 269 142 124 159 chr15 25503028 25503141 -75877380 + MLT1F1 LTR MaLR 1 109 -458 30 27 0 0 chr15 25503141 25503178 -75877343 + AT_rich Low_complexity Low_complexity 1 37 0 1944 134 10 33 chr15 25503178 25503483 -75877038 + AluSx SINE Alu 1 298 -14 752 179 27 0 chr15 25503483 25503595 -75876926 - AluJo/FLAM SINE Alu -196 116 2 1439 212 42 111 chr15 25503597 25504047 -75876474 + MLT1F1 LTR MaLR 94 507 -60 2313 85 7 19 chr15 25504047 25504354 -75876167 - AluSg SINE Alu -7 303 1 1439 212 42 111 chr15 25504354 25504408 -75876113 + MLT1F1 LTR MaLR 507 563 -4 799 172 0 22 chr15 25504420 25504554 -75875967 + FLAM_C SINE Alu 2 132 -11 915 249 75 31 chr15 25504564 25504575 -75875946 + L1MD2 LINE L1 3151 3160 -2986 2075 154 0 0 chr15 25504575 25504880 -75875641 + AluSx SINE Alu 1 305 -7 915 249 75 31 chr15 25504880 25505281 -75875240 + L1MD2 LINE L1 3160 3581 -2565 * 4627 206 53 31 chr15 25505270 25506347 -75874174 + L1MD2 LINE L1 4588 5711 -648 2301 81 20 0 chr15 25506347 25506644 -75873877 + AluSp SINE Alu 1 303 -10 4627 206 53 31 chr15 25506644 25507278 -75873243 + L1MD2 LINE L1 5711 6329 -30 1014 229 86 67 chr15 25507975 25508421 -75872100 + MLT1C LTR MaLR 1 458 -9 746 107 14 29 chr15 25509120 25509260 -75871261 + L1MA4 LINE L1 6160 6297 -3 2164 108 10 0 chr15 25509294 25509589 -75870932 + AluSx SINE Alu 1 298 -14 2145 139 25 79 chr15 25509698 25509863 -75870658 + L1MB7 LINE L1 5663 5835 -349 618 138 165 18 chr15 25509863 25509972 -75870549 + FLAM_A SINE Alu 1 125 -8 2145 139 25 79 chr15 25509972 25510238 -75870283 + L1MB7 LINE L1 5835 6071 -113 462 216 11 0 chr15 25510321 25510409 -75870112 - MER2 DNA MER2_type 0 345 257 994 69 0 0 chr15 25510409 25510525 -75869996 + AluY SINE Alu 1 116 -195 522 92 0 0 chr15 25510525 25510590 -75869931 + AluJ/FRAM SINE Alu 233 297 -15 1658 165 4 0 chr15 25510592 25510853 -75869668 - MER2 DNA MER2_type -82 263 2 361 78 20 0 chr15 25511049 25511100 -75869421 - MER75B DNA T2_type 0 243 192 2246 100 0 3 chr15 25511490 25511780 -75868741 - AluSq SINE Alu -24 289 1 1840 177 0 7 chr15 25511836 25512136 -75868385 + AluJb SINE Alu 1 298 -14 338 264 0 0 chr15 25512160 25512247 -75868274 - L2 LINE L2 -4 3268 3182 1772 139 7 17 chr15 25512266 25512554 -75867967 - AluJb SINE Alu -17 295 11 703 191 22 15 chr15 25512573 25512709 -75867812 - AluJb SINE Alu -174 138 2 1513 176 3 30 chr15 25514145 25514440 -75866081 - L1MB7 LINE L1 -185 5999 5713 726 212 15 0 chr15 25514443 25514580 -75865941 + Tigger1 DNA MER2_type 1 139 -2279 * 1122 154 32 41 chr15 25514576 25514797 -75865724 + Tigger1 DNA MER2_type 2200 2418 0 2299 158 21 76 chr15 25514797 25515115 -75865406 - L1MB7 LINE L1 -466 5712 5378 997 72 29 22 chr15 25515115 25515253 -75865268 + MER85 DNA T2_type 1 139 0 2299 158 21 76 chr15 25515253 25515811 -75864710 - L1MB7 LINE L1 -800 5378 4903 298 202 0 0 chr15 25515836 25515892 -75864629 - MIR3 SINE MIR -50 158 102 237 65 0 0 chr15 25516352 25516383 -75864138 + (T)n Simple_repeat Simple_repeat 1 31 0 2128 102 0 3 chr15 25516540 25516844 -75863677 + AluSx SINE Alu 3 305 0 282 220 0 0 chr15 25516971 25517030 -75863491 + Charlie8 DNA MER1_type 33 91 -2326 297 140 20 0 chr15 25517114 25517164 -75863357 + Charlie8 DNA MER1_type 1363 1413 -1004 1458 92 0 83 chr15 25517637 25517866 -75862655 + AluSg SINE Alu 1 210 -100 309 323 21 0 chr15 25517933 25518026 -75862495 + L2 LINE L2 3153 3247 -25 185 262 82 16 chr15 25519440 25519501 -75861020 - L2 LINE L2 -41 3231 3167 1427 180 20 56 chr15 25521151 25521299 -75859222 + AluJo SINE Alu 1 134 -178 1988 159 0 7 chr15 25521299 25521601 -75858920 + AluJo SINE Alu 1 300 -12 1427 180 20 56 chr15 25521601 25521757 -75858764 + AluJo SINE Alu 134 294 -18 214 317 61 0 chr15 25522037 25522119 -75858402 + L2 LINE L2 3185 3271 -1 309 277 31 23 chr15 25522582 25522712 -75857809 + L1M4 LINE L1 4904 5034 -1112 2200 76 0 96 chr15 25523321 25523665 -75856856 - AluSx SINE Alu -1 311 1 28 29 0 0 chr15 25528197 25528232 -75852289 + AT_rich Low_complexity Low_complexity 1 35 0 2348 96 3 0 chr15 25529087 25529389 -75851132 - AluSg SINE Alu -7 303 1 641 220 100 13 chr15 25529489 25529639 -75850882 - MER3 DNA MER1_type 0 209 47 1551 83 69 14 chr15 25529669 25529763 -75850758 - MER30 DNA MER1_type -1 229 142 2379 94 0 3 chr15 25529763 25530060 -75850461 + AluSx SINE Alu 1 296 -16 1551 83 69 14 chr15 25530060 25530182 -75850339 - MER30 DNA MER1_type -88 142 1 1782 159 20 17 chr15 25530744 25531046 -75849475 - AluJb SINE Alu -9 303 1 2238 76 7 33 chr15 25531053 25531492 -75849029 - AluSg SINE Alu 0 431 1 208 0 0 0 chr15 25531569 25531592 -75848929 + (TTTG)n Simple_repeat Simple_repeat 2 124 0 2247 67 7 3 chr15 25531592 25531875 -75848646 - AluY SINE Alu -1 306 1 2416 74 0 6 chr15 25532368 25532679 -75847842 + AluSc SINE Alu 1 309 0 1342 174 5 5 chr15 25533234 25533453 -75847068 - AluSg/x SINE Alu -9 301 83 6183 142 25 22 chr15 25533800 25534956 -75845565 - L1MA10 LINE L1 -4 6330 5171 259 306 97 15 chr15 25534983 25535117 -75845404 + MIR SINE MIR 10 154 -108 222 62 0 0 chr15 25535460 25535492 -75845029 + (TA)n Simple_repeat Simple_repeat 2 33 0 189 0 0 0 chr15 25537250 25537271 -75843250 + (GAAAA)n Simple_repeat Simple_repeat 5 25 0 22 0 0 0 chr15 25537344 25537366 -75843155 + AT_rich Low_complexity Low_complexity 1 22 0 205 236 164 73 chr15 25537759 25537789 -75842732 - MIR3 SINE MIR -25 183 157 464 321 38 11 chr15 25537789 25537973 -75842548 + MER5A DNA MER1_type 1 189 0 205 236 164 73 chr15 25537973 25538052 -75842469 - MIR3 SINE MIR -51 157 64 27 62 0 0 chr15 25539800 25539848 -75840673 + AT_rich Low_complexity Low_complexity 1 48 0 878 163 14 0 chr15 25539992 25540139 -75840382 + FAM SINE Alu 21 169 -16 399 296 208 26 chr15 25540154 25540606 -75839915 + L1ME LINE L1 4310 4843 -1303 365 79 40 13 chr15 25540768 25540838 -75839683 + (TA)n Simple_repeat Simple_repeat 2 74 0 2197 101 7 3 chr15 25540838 25541126 -75839395 - AluSq SINE Alu -24 289 1 643 209 71 75 chr15 25541351 25541618 -75838903 + L1ME LINE L1 5523 5784 -337 39 60 0 0 chr15 25541695 25541762 -75838759 + AT_rich Low_complexity Low_complexity 1 67 0 196 132 0 57 chr15 25541779 25541832 -75838689 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 211 182 0 0 chr15 25541870 25541903 -75838618 + (CA)n Simple_repeat Simple_repeat 2 34 0 268 309 36 0 chr15 25543136 25543220 -75837301 + LTR67 LTR ERVL 107 193 -364 193 95 0 143 chr15 25544800 25544842 -75835679 + L3b LINE CR1 1540 1575 -8 16546 121 22 11 chr15 25544982 25547373 -75833148 + Tigger1 DNA MER2_type 1 2417 -1 2043 146 0 0 chr15 25547701 25547989 -75832532 + AluSx SINE Alu 1 288 -24 286 125 21 0 chr15 25548040 25548088 -75832433 - MLT1A2 LTR MaLR 0 374 326 5302 198 97 41 chr15 25548089 25549316 -75831205 - MLT1A1-int LTR MaLR -439 1296 1 1808 179 36 30 chr15 25549316 25549655 -75830866 - MLT1A1 LTR MaLR 0 365 29 2352 141 28 19 chr15 25549655 25550016 -75830505 + THE1B LTR MaLR 1 364 0 12594 84 9 9 chr15 25550016 25551597 -75828924 + THE1B-int LTR MaLR 1 1580 0 2437 137 28 14 chr15 25551597 25551956 -75828565 + THE1B LTR MaLR 1 364 0 1808 179 36 30 chr15 25551956 25551977 -75828544 - MLT1A1 LTR MaLR -335 30 1 477 227 100 47 chr15 25552118 25552268 -75828253 - MER46A DNA MER2_type -78 158 1 * 1107 181 60 9 chr15 25552134 25552350 -75828171 + MER46A DNA MER2_type 1 227 -9 205 306 88 31 chr15 25553034 25553194 -75827327 + MIR SINE MIR 20 188 -74 1032 254 155 32 chr15 25553368 25554149 -75826372 - L2 LINE L2 0 3313 2434 291 316 45 82 chr15 25554278 25554522 -75825999 - L2 LINE L2 -13 3259 3025 2346 94 3 0 chr15 25555063 25555361 -75825160 + AluSx SINE Alu 1 299 -13 1687 100 0 0 chr15 25556277 25556497 -75824024 + AluSc SINE Alu 1 220 -89 2535 48 0 0 chr15 25556975 25557267 -75823254 - AluY SINE Alu -19 292 1 671 315 133 0 chr15 25557677 25557979 -75822542 - L2 LINE L2 -509 2805 2464 266 244 13 32 chr15 25558054 25558174 -75822347 + L1ME4a LINE L1 5325 5429 -737 1713 180 103 28 chr15 25558220 25558648 -75821873 + MLT1C LTR MaLR 6 465 -2 785 306 68 16 chr15 25558651 25558958 -75821563 + L1ME4a LINE L1 5484 5806 -315 4414 140 32 29 chr15 25558961 25559712 -75820809 + L1MC1 LINE L1 5570 6322 -11 2165 100 21 0 chr15 25559714 25559993 -75820528 + AluSx SINE Alu 1 285 -27 34 42 0 0 chr15 25560017 25560065 -75820456 + AT_rich Low_complexity Low_complexity 1 48 0 829 100 0 0 chr15 25560098 25560208 -75820313 - AluSg/x SINE Alu -8 302 193 490 189 5 55 chr15 25560324 25560464 -75820057 + L1MC4 LINE L1 7845 8042 0 2376 87 0 0 chr15 25560479 25560777 -75819744 + AluY SINE Alu 1 298 -13 351 258 132 13 chr15 25560791 25560950 -75819571 + L1ME4a LINE L1 5939 6116 -5 471 248 48 28 chr15 25561301 25561446 -75819075 + HAL1 LINE L1 1047 1194 -1313 1122 196 97 33 chr15 25561499 25561830 -75818691 + HAL1 LINE L1 1296 1647 -860 491 261 200 74 chr15 25561851 25562088 -75818433 + MLT1L LTR MaLR 5 211 -404 2148 117 0 19 chr15 25562088 25562224 -75818297 + AluSx SINE Alu 1 138 -174 2491 67 0 10 chr15 25562224 25562538 -75817983 + AluY SINE Alu 1 311 0 2148 117 0 19 chr15 25562538 25562709 -75817812 + AluSx SINE Alu 138 302 -10 491 261 200 74 chr15 25562709 25562930 -75817591 + MLT1L LTR MaLR 211 521 -94 2370 125 149 8 chr15 25564738 25565113 -75815408 - MSTA LTR MaLR 0 428 1 1768 181 54 25 chr15 25565316 25565670 -75814851 - MLT1A1 LTR MaLR 0 365 2 2056 113 41 0 chr15 25565779 25566072 -75814449 + AluSg SINE Alu 1 305 -5 481 181 55 48 chr15 25566083 25566229 -75814292 + L1ME1 LINE L1 6017 6162 -2 210 360 33 7 chr15 25566530 25566680 -75813841 - L2 LINE L2 -474 2840 2687 243 360 11 0 chr15 25566806 25566895 -75813626 + Charlie4 DNA MER1_type 1867 1956 -5 360 152 0 0 chr15 25568200 25568266 -75812255 + (CA)n Simple_repeat Simple_repeat 2 67 0 1960 87 20 0 chr15 25569354 25569608 -75810913 + AluSq SINE Alu 44 302 -11 355 292 179 40 chr15 25570783 25571112 -75809409 + HAL1 LINE L1 91 465 -2042 3348 137 16 2 chr15 25571168 25571673 -75808848 - L1MB3 LINE L1 -11 6172 5661 398 255 0 11 chr15 25571673 25571767 -75808754 + HAL1 LINE L1 811 903 -1604 1794 170 0 13 chr15 25571801 25572112 -75808409 + AluJb SINE Alu 1 307 -5 1199 244 132 9 chr15 25572115 25572570 -75807951 + HAL1 LINE L1 1104 1614 -893 603 221 202 54 chr15 25572728 25573045 -75807476 - L2 LINE L2 0 3313 2950 298 248 112 8 chr15 25573418 25573543 -75806978 - MIR SINE MIR -102 160 23 262 254 30 0 chr15 25574382 25574449 -75806072 + L1MC4a LINE L1 7739 7807 -1 200 278 262 0 chr15 25574476 25574667 -75805854 + L2 LINE L2 664 904 -2410 231 277 61 34 chr15 25574899 25575047 -75805474 - HAL1 LINE L1 -665 1842 1691 311 213 101 77 chr15 25575053 25575171 -75805350 - L1MC5 LINE L1 -36 7925 7800 2164 123 0 19 chr15 25575171 25575488 -75805033 - AluSq SINE Alu 0 313 3 311 213 101 77 chr15 25575488 25575538 -75804983 - L1MC5 LINE L1 -161 7800 7753 779 156 0 0 chr15 25575561 25575670 -75804851 + FLAM_C SINE Alu 18 126 -17 431 291 194 18 chr15 25576271 25576671 -75803850 + L1ME LINE L1 5351 5820 -301 233 329 13 0 chr15 25576679 25576755 -75803766 + L2 LINE L2 1177 1253 -2061 1616 125 101 87 chr15 25576814 25577181 -75803340 + L1MB8 LINE L1 5806 6177 -1 1523 159 34 23 chr15 25577450 25577714 -75802807 - AluJb SINE Alu -45 267 1 514 248 117 5 chr15 25577721 25577927 -75802594 + L1ME4a LINE L1 5713 5941 -180 203 345 0 0 chr15 25578824 25578882 -75801639 + MIR SINE MIR 90 147 -115 284 238 12 0 chr15 25579081 25579161 -75801360 - L1MB8 LINE L1 -2 6176 6096 2058 130 7 7 chr15 25579672 25579973 -75800548 + AluSq SINE Alu 1 301 -12 1908 121 0 0 chr15 25580428 25580684 -75799837 + AluSx SINE Alu 49 304 -8 989 267 48 22 chr15 25581603 25581918 -75798603 + L1ME LINE L1 5372 5694 -476 2555 50 3 0 chr15 25582004 25582304 -75798217 + AluY SINE Alu 1 301 -10 2742 278 129 45 chr15 25582481 25582757 -75797764 + L1M4 LINE L1 2773 3024 -3122 1882 161 0 0 chr15 25582757 25583048 -75797473 + AluSx SINE Alu 1 291 -21 180 0 0 0 chr15 25583052 25583072 -75797449 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2742 278 129 45 chr15 25583072 25584275 -75796246 + L1M4 LINE L1 3026 4126 -2020 2906 122 23 25 chr15 25584275 25584710 -75795811 - Tigger2a DNA MER2_type 0 434 1 2742 278 129 45 chr15 25584710 25585021 -75795500 + L1M4 LINE L1 4126 4409 -1737 4437 77 18 0 chr15 25585021 25585565 -75794956 - MER41A LTR ERV1 0 554 1 2742 278 129 45 chr15 25585565 25586093 -75794428 + L1M4 LINE L1 4409 5295 -851 24 32 0 0 chr15 25586347 25586378 -75794143 + AT_rich Low_complexity Low_complexity 1 31 0 183 329 170 20 chr15 25586534 25586887 -75793634 - L2 LINE L2 -997 2317 1912 23 0 0 0 chr15 25590719 25590742 -75789779 + AT_rich Low_complexity Low_complexity 1 23 0 2052 153 25 25 chr15 25592958 25593323 -75787198 + MLT1A1 LTR MaLR 1 365 0 222 329 114 25 chr15 25596269 25596427 -75784094 - L2 LINE L2 -10 3303 3132 2334 95 3 7 chr15 25596688 25596994 -75783527 + AluSg SINE Alu 1 305 -5 2230 114 0 0 chr15 25597007 25597297 -75783224 + AluSx SINE Alu 1 290 -22 2249 67 3 11 chr15 25597413 25597735 -75782786 - AluY SINE Alu 0 320 1 2535 230 184 22 chr15 25599000 25599117 -75781404 + L1MC4 LINE L1 6484 6581 -1461 294 29 0 0 chr15 25599117 25599152 -75781369 + (CA)n Simple_repeat Simple_repeat 2 36 0 2535 230 184 22 chr15 25599152 25599992 -75780529 + L1MC4 LINE L1 6581 7596 -446 184 270 81 40 chr15 25600066 25600140 -75780381 - L2 LINE L2 0 3313 3237 460 291 49 85 chr15 25600845 25601291 -75779230 + MLT1J LTR MaLR 5 434 -77 2131 104 10 0 chr15 25601329 25601618 -75778903 + AluSc SINE Alu 5 296 -13 252 290 65 19 chr15 25602051 25602158 -75778363 + MLT1K LTR MaLR 457 568 -20 449 203 0 6 chr15 25602255 25602418 -75778103 + (CCA)n Simple_repeat Simple_repeat 3 164 0 804 248 5 0 chr15 25602520 25602718 -75777803 + L1MC2 LINE L1 3544 3742 -2404 1141 157 0 0 chr15 25602720 25602886 -75777635 + AluJb SINE Alu 3 168 -144 2211 95 7 3 chr15 25602912 25603206 -75777315 - AluSg SINE Alu -15 295 1 2829 190 55 4 chr15 25603207 25604111 -75776410 + L1MC2 LINE L1 4899 5858 -486 914 122 0 6 chr15 25604298 25604479 -75776042 + (CCA)n Simple_repeat Simple_repeat 1 180 0 603 206 0 0 chr15 25604509 25604684 -75775837 + (CCA)n Simple_repeat Simple_repeat 3 177 0 312 208 0 0 chr15 25604701 25604797 -75775724 + (CCA)n Simple_repeat Simple_repeat 3 98 0 501 239 8 45 chr15 25605155 25605289 -75775232 + MIR SINE MIR 112 240 -22 2308 115 0 0 chr15 25605443 25605748 -75774773 - AluSx SINE Alu -7 305 1 218 79 0 26 chr15 25606913 25606951 -75773570 + (TAAAAA)n Simple_repeat Simple_repeat 2 38 0 2318 100 0 0 chr15 25607421 25607722 -75772799 - AluSx SINE Alu -11 301 1 29 90 0 0 chr15 25608994 25609072 -75771449 + AT_rich Low_complexity Low_complexity 1 78 0 2381 75 0 3 chr15 25609079 25609373 -75771148 + AluSg SINE Alu 1 293 -17 1554 135 0 12 chr15 25609819 25610064 -75770457 + AluJo SINE Alu 71 312 0 1507 158 29 40 chr15 25610885 25611163 -75769358 + AluJb SINE Alu 9 283 -29 958 248 83 73 chr15 25611579 25612168 -75768353 - L1ME4a LINE L1 -14 6176 5582 372 332 60 11 chr15 25612220 25612485 -75768036 - L1M4 LINE L1 -3532 2614 2337 260 261 72 29 chr15 25612608 25612746 -75767775 - L1ME4a LINE L1 -4055 2341 2198 264 289 0 12 chr15 25612885 25612968 -75767553 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 2303 95 0 3 chr15 25613266 25613570 -75766951 - AluY SINE Alu -8 303 1 21 0 0 0 chr15 25614358 25614379 -75766142 + AT_rich Low_complexity Low_complexity 1 21 0 1609 179 0 11 chr15 25614653 25614932 -75765589 + AluJo SINE Alu 23 298 -14 1351 13 0 0 chr15 25615612 25615762 -75764759 - AluYb8 SINE Alu -2 316 167 2384 84 0 7 chr15 25617137 25617436 -75763085 + AluSq SINE Alu 1 297 -16 214 258 114 30 chr15 25617653 25617785 -75762736 + MIR SINE MIR 120 262 0 2373 89 0 0 chr15 25617941 25618232 -75762289 - AluSc SINE Alu -18 291 1 506 195 81 16 chr15 25618387 25618510 -75762011 + MLT1C LTR MaLR 64 194 -311 24 32 0 0 chr15 25618649 25618680 -75761841 + AT_rich Low_complexity Low_complexity 1 31 0 712 191 24 154 chr15 25618707 25618953 -75761568 + MLT1C LTR MaLR 170 460 -7 2071 133 0 7 chr15 25619467 25619792 -75760729 - AluSx SINE Alu 0 323 1 1986 111 14 4 chr15 25620503 25620815 -75759706 + AluSq SINE Alu 3 317 0 599 235 33 66 chr15 25620881 25621094 -75759427 - L2 LINE L2 0 3313 3108 2015 95 9 76 chr15 25621299 25621615 -75758906 - AluSx SINE Alu -16 296 2 25 0 0 0 chr15 25621636 25621661 -75758860 + AT_rich Low_complexity Low_complexity 1 25 0 434 292 113 11 chr15 25621685 25621870 -75758651 - MIR SINE MIR -7 255 52 22 0 0 0 chr15 25622791 25622813 -75757708 + GC_rich Low_complexity Low_complexity 1 22 0 4268 169 105 53 chr15 25623747 25623883 -75756638 - Tigger6a DNA MER2_type -514 1083 955 1754 152 3 13 chr15 25623883 25624192 -75756329 + AluJo SINE Alu 3 308 -4 4268 169 105 53 chr15 25624192 25624980 -75755541 - Tigger6a DNA MER2_type -642 955 97 1850 151 0 21 chr15 25624980 25625298 -75755223 - AluJb SINE Alu 0 316 5 4268 169 105 53 chr15 25625298 25625400 -75755121 - Tigger6a DNA MER2_type -1500 97 2 210 119 0 48 chr15 25625406 25625448 -75755073 + (TA)n Simple_repeat Simple_repeat 2 41 0 6912 210 89 35 chr15 25625972 25628148 -75752373 + L1M4 LINE L1 37 2093 -4553 2448 86 0 0 chr15 25628148 25628449 -75752072 + AluY SINE Alu 1 301 -10 6912 210 89 35 chr15 25628449 25628461 -75752060 + L1M4 LINE L1 2093 2103 -4543 1900 155 27 0 chr15 25628461 25628582 -75751939 + AluJo SINE Alu 1 117 -195 315 0 0 0 chr15 25628582 25628617 -75751904 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1900 155 27 0 chr15 25628617 25628792 -75751729 + AluJo SINE Alu 117 305 -7 6912 210 89 35 chr15 25628792 25629099 -75751422 + L1M4 LINE L1 2103 2699 -3947 829 230 45 45 chr15 25629096 25629409 -75751112 + L1M4 LINE L1 3539 3851 -2793 * 844 191 13 0 chr15 25629414 25629566 -75750955 + FRAM SINE Alu 1 40 0 415 209 17 9 chr15 25629566 25629681 -75750840 + GA-rich Low_complexity Low_complexity 4 119 0 349 269 15 8 chr15 25629684 25629818 -75750703 + L1M4 LINE L1 3881 4015 -2629 455 230 0 0 chr15 25629821 25629908 -75750613 + L2 LINE L2 3218 3304 -9 2170 114 0 0 chr15 25630103 25630392 -75750129 - AluSx SINE Alu -23 289 1 231 173 0 0 chr15 25630420 25630472 -75750049 + (CA)n Simple_repeat Simple_repeat 2 53 0 350 225 79 0 chr15 25630472 25630561 -75749960 + MER112 DNA MER1_type 67 162 -98 647 312 50 80 chr15 25630561 25630950 -75749571 + L2 LINE L2 293 663 -2651 2518 53 0 0 chr15 25630950 25631249 -75749272 - AluY SINE Alu -12 299 1 647 312 50 80 chr15 25631249 25631394 -75749127 + L2 LINE L2 663 811 -2503 493 235 69 104 chr15 25631394 25631654 -75748867 - MER102a DNA MER1_type -2 328 78 266 271 110 88 chr15 25631771 25631801 -75748720 + HAL1 LINE L1 149 177 -2330 2481 52 3 13 chr15 25631801 25632107 -75748414 + AluY SINE Alu 1 303 -8 266 271 110 88 chr15 25632107 25632505 -75748016 + HAL1 LINE L1 177 622 -1885 708 255 47 56 chr15 25632549 25632890 -75747631 - HAL1 LINE L1 -335 2172 1835 481 30 30 0 chr15 25632891 25632958 -75747563 + (GA)n Simple_repeat Simple_repeat 2 70 0 234 95 0 48 chr15 25632961 25633003 -75747518 - MLT2C1 LTR ERVL -48 349 310 390 96 41 0 chr15 25633045 25633118 -75747403 + GA-rich Low_complexity Low_complexity 2 77 0 1588 184 34 24 chr15 25633121 25633449 -75747072 - MLT2D LTR ERVL -20 534 55 3444 275 113 44 chr15 25633527 25633628 -75746893 + L1ME3A LINE L1 1868 1961 -4254 2108 124 3 7 chr15 25633628 25633934 -75746587 - AluSq SINE Alu -8 305 1 3444 275 113 44 chr15 25633934 25634169 -75746352 + L1ME3A LINE L1 1961 2178 -4037 2345 95 0 0 chr15 25634169 25634464 -75746057 + AluY SINE Alu 9 303 -8 3444 275 113 44 chr15 25634464 25635554 -75744967 + L1ME3A LINE L1 2178 3192 -3023 501 230 22 65 chr15 25635554 25635693 -75744828 - MER94 DNA DNA 0 134 2 3444 275 113 44 chr15 25635693 25636091 -75744430 + L1ME3A LINE L1 3192 3561 -2654 1579 174 34 31 chr15 25636091 25636384 -75744137 + AluJo SINE Alu 1 294 -18 3444 275 113 44 chr15 25636384 25637004 -75743517 + L1ME3A LINE L1 3561 4137 -2078 3144 176 26 11 chr15 25637004 25637545 -75742976 - MER44D DNA MER2_type -1 604 1 3444 275 113 44 chr15 25637545 25637702 -75742819 + L1ME3A LINE L1 4137 4282 -1933 2281 79 28 0 chr15 25637702 25637993 -75742528 - AluSx SINE Alu -13 299 1 2488 64 0 0 chr15 25638002 25638300 -75742221 - AluY SINE Alu -11 300 3 3444 275 113 44 chr15 25638300 25638865 -75741656 + L1ME3A LINE L1 4289 5341 -874 2132 84 30 7 chr15 25638940 25639237 -75741284 + AluSg SINE Alu 1 304 -6 560 247 124 6 chr15 25639239 25639496 -75741025 + L1ME3A LINE L1 5365 5644 -595 558 262 48 6 chr15 25639505 25639673 -75740848 + LTR41 LTR ERVL 7 181 -592 369 250 47 123 chr15 25639923 25640199 -75740322 + LTR41 LTR ERVL 510 764 -9 861 273 54 24 chr15 25640235 25640569 -75739952 + L1ME3A LINE L1 5693 6036 -203 203 217 196 0 chr15 25640788 25640834 -75739687 - L2 LINE L2 -81 3191 3137 2098 142 0 0 chr15 25640884 25641231 -75739290 - AluJb SINE Alu 0 347 1 1489 243 105 101 chr15 25641294 25641652 -75738869 + L1MEd LINE L1 78 433 -5686 1920 151 0 7 chr15 25641652 25641943 -75738578 + AluSx SINE Alu 24 312 0 1489 243 105 101 chr15 25641943 25642453 -75738068 + L1MEd LINE L1 433 949 -5170 331 360 100 20 chr15 25643388 25643588 -75736933 + L2 LINE L2 3056 3271 -1 1081 211 100 106 chr15 25643632 25644144 -75736377 - MLT1J LTR MaLR 0 511 3 270 310 0 0 chr15 25644799 25644870 -75735651 - L2 LINE L2 -1 3312 3242 2561 60 0 0 chr15 25645979 25646280 -75734241 + AluY SINE Alu 1 301 -10 2069 116 0 0 chr15 25646282 25646567 -75733954 + AluSq SINE Alu 17 301 -12 316 308 122 51 chr15 25646630 25646819 -75733702 - L1ME LINE L1 -508 5654 5443 2289 108 0 3 chr15 25646819 25647125 -75733396 + AluSx SINE Alu 1 305 -7 316 308 122 51 chr15 25647125 25647172 -75733349 - L1ME LINE L1 -719 5443 5401 393 231 23 69 chr15 25647223 25647396 -75733125 - L1ME LINE L1 -874 5272 5108 4849 146 26 43 chr15 25648926 25649021 -75731500 + L1PB4 LINE L1 5254 5349 -954 1881 144 16 19 chr15 25649021 25649334 -75731187 - AluSx SINE Alu 0 312 1 4849 146 26 43 chr15 25649334 25649479 -75731042 + L1PB4 LINE L1 5349 5495 -808 2140 109 0 0 chr15 25649479 25649763 -75730758 - AluSg SINE Alu -26 284 1 4849 146 26 43 chr15 25649763 25650454 -75730067 + L1PB4 LINE L1 5495 6300 -3 2209 111 7 0 chr15 25650666 25650964 -75729557 + AluSx SINE Alu 1 300 -12 209 258 0 41 chr15 25651337 25651434 -75729087 + CT-rich Low_complexity Low_complexity 4 96 0 306 286 85 54 chr15 25651435 25651659 -75728862 - MLT1H-int LTR MaLR -832 539 309 297 278 26 9 chr15 25651667 25651782 -75728739 - MLT1H-int LTR MaLR -1250 121 5 1028 264 117 34 chr15 25651786 25652290 -75728231 - MLT1H LTR MaLR 0 549 4 433 351 50 32 chr15 25652450 25652732 -75727789 - L3 LINE CR1 -78 1499 1213 1484 121 0 5 chr15 25653211 25653418 -75727103 - L1PB1 LINE L1 -2 6149 5944 1973 161 0 19 chr15 25654143 25654460 -75726061 + AluJb SINE Alu 1 311 -1 796 172 11 11 chr15 25654475 25654649 -75725872 + GA-rich Low_complexity Low_complexity 4 177 0 2399 121 121 3 chr15 25654654 25654859 -75725662 + MSTB LTR MaLR 2 181 -245 201 39 0 0 chr15 25654859 25654885 -75725636 + (TC)n Simple_repeat Simple_repeat 1 26 0 2399 121 121 3 chr15 25654885 25655059 -75725462 + MSTB LTR MaLR 181 426 0 702 130 32 24 chr15 25655144 25655267 -75725254 + L1MB4 LINE L1 6057 6180 0 2365 99 0 6 chr15 25655275 25655587 -75724934 - AluSg SINE Alu 0 310 1 1967 122 0 4 chr15 25656572 25656851 -75723670 - AluSx SINE Alu -18 294 17 411 264 145 50 chr15 25656873 25656962 -75723559 - MER5A DNA MER1_type -7 182 103 2532 74 0 0 chr15 25656962 25657272 -75723249 - AluY SINE Alu -1 310 1 411 264 145 50 chr15 25657272 25657341 -75723180 - MER5A DNA MER1_type -86 103 9 293 322 38 2 chr15 25657577 25657687 -75722834 + MER20B DNA MER1_type 86 202 -17 191 250 0 0 chr15 25657755 25657799 -75722722 + L2 LINE L2 774 817 -2497 1653 162 10 43 chr15 25658319 25658621 -75721900 + AluJo SINE Alu 1 292 -20 326 167 30 15 chr15 25660898 25660964 -75719557 - MER58 DNA MER1_type -4 2416 2350 487 242 12 55 chr15 25663242 25663494 -75717027 + L1MEc LINE L1 2063 2260 -3955 2261 81 3 10 chr15 25663494 25663792 -75716729 - AluSg1 SINE Alu -13 296 1 487 242 12 55 chr15 25663792 25663823 -75716698 + L1MEc LINE L1 2260 2291 -3924 804 133 23 0 chr15 25663823 25663951 -75716570 + AluJb SINE Alu 1 131 -181 442 226 11 0 chr15 25713952 25714045 -75666476 + MER81 DNA DNA 16 109 -5 267 194 16 16 chr15 25714055 25714117 -75666404 - MLT1K LTR MaLR -23 565 504 284 256 88 40 chr15 25714214 25714339 -75666182 - MER5B DNA MER1_type -31 147 17 581 257 11 29 chr15 25714371 25714546 -75665975 - MER5B DNA MER1_type -5 173 2 190 238 38 100 chr15 25714842 25714922 -75665599 + MIR SINE MIR 77 151 -111 2464 59 10 7 chr15 25716213 25716520 -75664001 + AluY SINE Alu 1 308 -3 974 227 68 31 chr15 25716820 25717630 -75662891 - L1M4c LINE L1 -4838 1808 919 1020 229 135 52 chr15 25717927 25718290 -75662231 - MSTD LTR MaLR -2 394 2 26 50 0 0 chr15 25718351 25718391 -75662130 + AT_rich Low_complexity Low_complexity 1 40 0 210 276 92 61 chr15 25719356 25719454 -75661067 - MIR SINE MIR -146 116 16 185 321 0 0 chr15 25719744 25719800 -75660721 + MIR3 SINE MIR 112 167 -41 3211 139 79 18 chr15 25720791 25721359 -75659162 + LTR26 LTR ERV1 1 603 0 39 0 0 0 chr15 25722197 25722236 -75658285 + GC_rich Low_complexity Low_complexity 1 39 0 1032 202 163 28 chr15 25722991 25723273 -75657248 + L1MDa LINE L1 27 346 -6194 334 312 102 9 chr15 25723647 25723980 -75656541 + HAL1 LINE L1 1235 1598 -909 782 248 124 62 chr15 25724288 25724804 -75655717 + MER45C DNA AcHobo 46 951 -2 2065 213 73 64 chr15 25724806 25725355 -75655166 + MLT2B3 LTR ERVL 1 554 0 1780 264 130 14 chr15 25725713 25726305 -75654216 - MLT2F LTR ERVL -2 661 1 2613 65 0 0 chr15 25726608 25726916 -75653605 + AluY SINE Alu 1 308 -3 312 273 82 26 chr15 25727325 25727702 -75652819 + HAL1b LINE L1 373 792 -556 650 219 14 139 chr15 25728027 25728315 -75652206 + L1MC5 LINE L1 6710 6961 -1000 522 280 127 34 chr15 25728320 25728588 -75651933 - LTR16B LTR ERVL 0 464 172 758 246 101 86 chr15 25728742 25728998 -75651523 + L1MC5 LINE L1 6966 7234 -727 2295 113 3 0 chr15 25728998 25729300 -75651221 + AluSq SINE Alu 1 303 -10 758 246 101 86 chr15 25729300 25729510 -75651011 + L1MC5 LINE L1 7234 7439 -522 234 239 58 71 chr15 25729655 25729810 -75650711 + L1ME3 LINE L1 5963 6115 -47 1901 138 10 3 chr15 25730078 25730375 -75650146 + AluSx SINE Alu 1 299 -13 259 306 97 8 chr15 25730391 25730515 -75650006 + L1MDa LINE L1 461 595 -5935 318 265 117 12 chr15 25731232 25731394 -75649127 + L1MDa LINE L1 917 1095 -5448 686 247 72 51 chr15 25731663 25732196 -75648325 + L1MDa LINE L1 2258 2748 -3792 * 1120 237 125 25 chr15 25732182 25732663 -75647858 + L1MDa LINE L1 3332 3860 -2680 2896 175 15 0 chr15 25732678 25733226 -75647295 + L1PA16 LINE L1 4848 5403 -743 4537 115 10 30 chr15 25733239 25733916 -75646605 + L1PA16 LINE L1 5494 6157 -9 2515 53 0 31 chr15 25733938 25734256 -75646265 + AluY SINE Alu 1 308 -3 241 191 32 32 chr15 25734259 25734322 -75646199 + L1MDa LINE L1 3868 3930 -2610 1398 175 30 17 chr15 25734621 25734855 -75645666 + MER8 DNA MER2_type 2 238 -1 319 264 0 0 chr15 25734911 25734983 -75645538 - L1MEd LINE L1 -6037 82 11 344 294 50 1 chr15 25734985 25735127 -75645394 - L1M4 LINE L1 -1123 5023 4873 375 175 16 0 chr15 25735150 25735213 -75645308 + MER92B LTR ERV1 3 66 -570 1715 185 49 0 chr15 25735219 25735586 -75644935 - L1M4 LINE L1 -1828 4318 3934 1258 185 14 0 chr15 25735588 25735799 -75644722 - AluJo SINE Alu -15 297 84 2297 202 2 0 chr15 25735803 25736299 -75644222 - L1M4 LINE L1 -2205 3941 3445 2302 189 13 13 chr15 25736299 25736768 -75643753 + L1PA16 LINE L1 5694 6165 -1 1434 177 76 12 chr15 25736768 25737096 -75643425 + MER92B LTR ERV1 60 408 -228 303 238 0 0 chr15 25737096 25737180 -75643341 + L1M4 LINE L1 3400 3483 -2663 4646 181 35 2 chr15 25737181 25738197 -75642324 - L1 LINE L1 -992 5154 4105 618 135 0 0 chr15 25738299 25738395 -75642126 + MSTB LTR MaLR 331 426 0 3120 178 19 17 chr15 25738718 25739360 -75641161 + L1MD2 LINE L1 5534 6176 -183 523 183 16 16 chr15 25739361 25739487 -75641034 + L1MD1 LINE L1 6117 6242 0 424 300 58 27 chr15 25739514 25739737 -75640784 - L1M4 LINE L1 -1686 4460 4231 308 267 39 36 chr15 25740006 25740348 -75640173 - L1M4 LINE L1 -2423 3723 3386 1345 146 26 15 chr15 25740349 25740617 -75639904 - L1MA4 LINE L1 -3 6297 6027 321 306 99 46 chr15 25740791 25741115 -75639406 - HAL1 LINE L1 -635 1872 1532 624 263 112 10 chr15 25741240 25741552 -75638969 - HAL1 LINE L1 -1157 1350 1007 311 339 90 44 chr15 25741989 25742444 -75638077 + L1MC/D LINE L1 4682 5157 -989 277 322 85 22 chr15 25742506 25742972 -75637549 + L1MC/D LINE L1 5257 5743 -429 361 214 0 36 chr15 25743257 25743397 -75637124 + GA-rich Low_complexity Low_complexity 4 138 0 2034 103 38 14 chr15 25743471 25743761 -75636760 - AluSx SINE Alu -15 297 1 233 328 161 10 chr15 25744251 25744443 -75636078 - MIR SINE MIR -6 256 36 2510 66 0 0 chr15 25745254 25745556 -75634965 + AluY SINE Alu 1 302 -9 1434 142 40 4 chr15 25745686 25745939 -75634582 + MSTB1 LTR MaLR 167 428 -4 1743 180 16 0 chr15 25745956 25746363 -75634158 - MLT2B1 LTR ERVL -56 459 1 665 190 67 6 chr15 25747694 25747873 -75632648 - L1MD3 LINE L1 -14 7981 7792 180 0 0 0 chr15 25748103 25748123 -75632398 + (TG)n Simple_repeat Simple_repeat 2 21 0 198 287 298 23 chr15 25748538 25749232 -75631289 + L2 LINE L2 1853 2737 -577 1173 252 35 19 chr15 25749232 25749656 -75630865 + L1MC4a LINE L1 5511 5941 -1867 220 282 158 34 chr15 25749871 25750137 -75630384 + L2 LINE L2 2804 3102 -211 1410 209 28 63 chr15 25750673 25751071 -75629450 - MLT1B LTR MaLR -6 384 1 1573 232 96 59 chr15 25751071 25751955 -75628566 - MLT1B-int LTR MaLR 0 1735 497 1937 121 121 26 chr15 25751955 25752247 -75628274 - Tigger1 DNA MER2_type 0 2418 2079 2220 110 7 3 chr15 25752247 25752555 -75627966 - AluSg SINE Alu 0 310 2 1937 121 121 26 chr15 25752555 25752649 -75627872 - Tigger1 DNA MER2_type -339 2079 1995 2153 141 0 6 chr15 25753171 25753483 -75627038 - AluSg SINE Alu 0 310 1 485 273 18 0 chr15 25753724 25753834 -75626687 - MER81 DNA DNA 0 114 3 207 0 0 0 chr15 25754012 25754035 -75626486 + (TTG)n Simple_repeat Simple_repeat 2 24 0 262 326 86 31 chr15 25754608 25754958 -75625563 - L1MC5 LINE L1 -455 7506 7138 * 2471 235 74 19 chr15 25754954 25756741 -75623780 - L1MCa LINE L1 -3374 3052 1053 2928 152 45 7 chr15 25756756 25757314 -75623207 - L1MA8 LINE L1 -5 6286 5708 687 237 46 92 chr15 25757323 25757625 -75622896 - L1MD3 LINE L1 -701 7084 6770 2626 63 8 11 chr15 25757625 25757991 -75622530 - L1PA8 LINE L1 -3 6169 5805 687 237 46 92 chr15 25757991 25758244 -75622277 - L1MD3 LINE L1 -1015 6770 6507 2773 3 0 0 chr15 25758244 25758542 -75621979 + AluYa5 SINE Alu 1 298 -13 687 237 46 92 chr15 25758542 25758877 -75621644 - L1MD3 LINE L1 -1278 6507 6158 1461 163 87 24 chr15 25758877 25759166 -75621355 - AluJo SINE Alu -5 307 1 687 237 46 92 chr15 25759166 25759803 -75620718 - L1MD3 LINE L1 -1627 6158 5745 356 245 20 0 chr15 25759818 25759916 -75620605 - L1MD3 LINE L1 -501 5663 5564 * 2606 234 30 74 chr15 25759902 25760326 -75620195 + L1MDb LINE L1 536 977 -5429 2174 94 4 0 chr15 25760326 25760625 -75619896 + AluSx SINE Alu 10 309 0 2606 234 30 74 chr15 25760625 25761210 -75619311 + L1MDb LINE L1 977 1488 -4918 408 287 0 0 chr15 25761264 25761414 -75619107 - L1MD3 LINE L1 -1778 4368 4219 4543 233 56 82 chr15 25761499 25763874 -75616647 + L1M4 LINE L1 2739 5051 -1095 304 259 112 9 chr15 25764000 25764116 -75616405 + L1ME LINE L1 1087 1214 -5326 422 265 42 52 chr15 25764183 25764470 -75616051 + L1ME LINE L1 3896 4179 -2361 775 260 129 73 chr15 25765074 25765317 -75615204 + L1ME LINE L1 4212 4440 -2100 1985 178 58 9 chr15 25765317 25765762 -75614759 + MLT1C LTR MaLR 1 467 0 775 260 129 73 chr15 25765762 25766260 -75614261 + L1ME LINE L1 4440 4995 -1545 23 0 0 0 chr15 25766261 25766284 -75614237 + AT_rich Low_complexity Low_complexity 1 23 0 1280 262 67 19 chr15 25766284 25767167 -75613354 + L1ME LINE L1 5043 5972 -586 1763 266 85 9 chr15 25767210 25768090 -75612431 + L1M4 LINE L1 2855 3801 -2345 306 244 49 0 chr15 25768254 25768336 -75612185 + MLT1J2 LTR MaLR 354 439 -11 2037 117 3 0 chr15 25768374 25768694 -75611827 - AluSx SINE Alu 0 321 1 278 309 65 30 chr15 25769015 25769183 -75611338 - L1MEd LINE L1 -5663 456 283 249 57 0 0 chr15 25769294 25769329 -75611192 + (T)n Simple_repeat Simple_repeat 1 35 0 263 378 27 0 chr15 25769402 25769513 -75611008 - MIR SINE MIR -62 146 33 403 276 125 117 chr15 25771029 25771361 -75609160 - L1M2 LINE L1 -5624 1225 897 231 36 0 0 chr15 25771361 25771389 -75609132 + (CGGGGG)n Simple_repeat Simple_repeat 2 29 0 403 276 125 117 chr15 25771389 25771794 -75608727 - L1M2 LINE L1 -5952 897 527 465 175 58 10 chr15 25774149 25774252 -75606269 + MIR SINE MIR 85 192 -70 291 323 13 77 chr15 25774314 25774469 -75606052 - MIR3 SINE MIR -63 145 1 7656 202 30 87 chr15 25776193 25778948 -75601573 - L1MC1 LINE L1 -2 6400 3934 855 154 0 0 chr15 25778948 25779078 -75601443 - AluSq/x SINE Alu -175 138 9 7656 202 30 87 chr15 25779078 25780828 -75599693 - L1MC1 LINE L1 -2468 3934 2086 4598 221 50 28 chr15 25780929 25782483 -75598038 - L1 LINE L1 -2302 3913 2326 636 222 5 97 chr15 25782488 25782695 -75597826 + L1MCa LINE L1 353 540 -6024 * 3356 188 41 15 chr15 25782693 25783780 -75596741 + L1MCa LINE L1 825 2048 -4516 327 264 35 62 chr15 25783783 25783927 -75596594 - L1M4 LINE L1 -1788 4358 4219 1512 33 0 0 chr15 25783966 25784146 -75596375 - L1PA4 LINE L1 0 6155 5976 8447 28 4 0 chr15 25784146 25785208 -75595313 + L1P LINE L1 4283 5348 -798 344 340 7 0 chr15 25785223 25785367 -75595154 - L1M4 LINE L1 -1987 4159 4015 728 301 73 36 chr15 25785619 25786689 -75593832 - L1M4 LINE L1 -2467 3679 2566 288 215 41 33 chr15 25786779 25786900 -75593621 - L1M LINE L1 -759 5405 5284 360 169 323 40 chr15 25786990 25787114 -75593407 - L1M4 LINE L1 -1491 4655 4497 885 159 7 0 chr15 25787471 25787609 -75592912 - ERVL LTR ERVL -1264 4500 4362 13867 194 43 45 chr15 25787610 25790522 -75589999 - ERVL LTR ERVL -1450 4204 1299 373 174 29 0 chr15 25790516 25790585 -75589936 - ERVL LTR ERVL -5157 607 537 * 1144 231 82 30 chr15 25790586 25790950 -75589571 + L1MC5 LINE L1 5390 5772 -2036 672 258 59 33 chr15 25791222 25791535 -75588986 + L1MC5 LINE L1 6545 6868 -944 319 269 37 15 chr15 25791564 25791698 -75588823 + L1M4 LINE L1 4970 5106 -1040 279 0 0 0 chr15 25791824 25791855 -75588666 + (CA)n Simple_repeat Simple_repeat 2 32 0 551 184 10 0 chr15 25792046 25792144 -75588377 + AluJ/FLAM SINE Alu 1 99 -213 289 314 84 25 chr15 25792360 25792634 -75587887 + L1MEd LINE L1 611 900 -5219 2217 118 0 0 chr15 25792714 25793018 -75587503 + AluSc SINE Alu 1 304 -5 3510 161 22 20 chr15 25793019 25793659 -75586862 + L1MA4 LINE L1 5660 6300 0 679 267 151 46 chr15 25793687 25794118 -75586403 - LTR33 LTR ERVL -14 507 32 478 220 85 14 chr15 25794164 25794305 -75586216 + L1MC5 LINE L1 7076 7226 -735 225 268 102 57 chr15 25794326 25794483 -75586038 + L1MC4a LINE L1 7244 7407 -401 261 231 19 0 chr15 25794613 25794665 -75585856 - MER31B LTR ERV1 -395 71 19 418 286 56 56 chr15 25794670 25794848 -75585673 + LTR16A1 LTR ERVL 280 457 0 252 270 70 20 chr15 25795089 25795189 -75585332 + ERVL LTR ERVL 2477 2581 -3183 646 195 70 0 chr15 25795190 25795318 -75585203 - L1MC1 LINE L1 0 6333 6197 * 1315 164 36 49 chr15 25795316 25795621 -75584900 - L1MDa LINE L1 -4249 2291 1991 2119 194 48 22 chr15 25795622 25795984 -75584537 + MSTB LTR MaLR 1 377 -49 2031 121 90 36 chr15 25795984 25796340 -75584181 - THE1C LTR MaLR 0 375 1 2119 194 48 22 chr15 25796340 25796390 -75584131 + MSTB LTR MaLR 377 424 -2 9977 163 22 18 chr15 25796390 25797368 -75583153 + MSTB-int LTR MaLR 1 992 -659 1988 136 10 13 chr15 25797368 25797670 -75582851 + AluSg SINE Alu 1 301 -9 9977 163 22 18 chr15 25797670 25798334 -75582187 + MSTB-int LTR MaLR 992 1651 0 2486 151 64 10 chr15 25798334 25798738 -75581783 + MSTB LTR MaLR 1 426 0 6457 226 84 44 chr15 25798739 25799103 -75581418 - L1MDa LINE L1 -4547 1993 1645 2397 169 46 7 chr15 25799103 25799518 -75581003 + MSTB1 LTR MaLR 2 432 0 6457 226 84 44 chr15 25799518 25799943 -75580578 - L1MDa LINE L1 -4895 1645 1238 2244 117 0 3 chr15 25799943 25800241 -75580280 - AluSx SINE Alu -15 297 1 6457 226 84 44 chr15 25800241 25801115 -75579406 - L1MDa LINE L1 -5302 1238 242 195 100 0 0 chr15 25801115 25801145 -75579376 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6457 226 84 44 chr15 25801145 25801382 -75579139 - L1MDa LINE L1 -6298 242 16 302 140 0 0 chr15 25801774 25801824 -75578697 - MLT2B1 LTR ERVL -2 518 469 898 255 5 20 chr15 25801891 25802091 -75578430 - MLT2B1 LTR ERVL -63 457 261 1499 287 81 20 chr15 25802228 25803350 -75577171 + L1ME3A LINE L1 4930 6166 -2 270 0 0 0 chr15 25803717 25803747 -75576774 + (TTG)n Simple_repeat Simple_repeat 2 31 0 24 77 0 0 chr15 25803820 25803872 -75576649 + AT_rich Low_complexity Low_complexity 1 52 0 1034 301 106 21 chr15 25804123 25804623 -75575898 + MLT1G1 LTR MaLR 1 595 0 2237 242 73 9 chr15 25805883 25806047 -75574474 + L1MDa LINE L1 2333 2485 -4055 491 17 0 0 chr15 25806047 25806105 -75574416 + L1PA4 LINE L1 6095 6152 -3 2237 242 73 9 chr15 25806105 25806911 -75573610 + L1MDa LINE L1 2485 3374 -3166 2181 230 67 73 chr15 25806904 25807151 -75573370 + L1MDa LINE L1 36 283 -6257 * 189 0 0 0 chr15 25807151 25807172 -75573349 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2181 230 67 73 chr15 25807172 25807849 -75572672 + L1MDa LINE L1 283 1204 -5336 1865 222 93 39 chr15 25807866 25808321 -75572200 + L1MDa LINE L1 3646 4154 -2386 2544 57 0 0 chr15 25808321 25808620 -75571901 + AluY SINE Alu 1 299 -12 1865 222 93 39 chr15 25808620 25808861 -75571660 + L1MDa LINE L1 4154 4380 -2160 247 363 19 25 chr15 25808906 25809063 -75571458 - MIR SINE MIR -73 189 34 212 132 0 53 chr15 25809909 25809947 -75570574 + L2 LINE L2 3262 3297 -16 1391 166 29 4 chr15 25809959 25810200 -75570321 - MLT1A1 LTR MaLR -1 364 118 303 326 101 23 chr15 25812329 25812547 -75567974 + L1MC1 LINE L1 5552 5786 -2022 265 151 57 25 chr15 25814344 25814503 -75566018 + (CTGTG)n Simple_repeat Simple_repeat 1 164 0 191 36 36 0 chr15 25817114 25817142 -75563379 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2188 88 7 29 chr15 25820030 25820336 -75560185 - AluSx SINE Alu -13 299 1 2362 74 0 10 chr15 25820728 25821025 -75559496 + AluY SINE Alu 1 294 -17 1721 52 0 19 chr15 25821137 25821349 -75559172 - AluY SINE Alu -103 208 1 451 232 71 54 chr15 25821355 25821579 -75558942 + L1MC5 LINE L1 7685 7912 -49 422 272 44 0 chr15 25822924 25823060 -75557461 - Charlie1 DNA MER1_type 0 2761 2620 * 574 207 112 95 chr15 25823042 25823274 -75557247 - Charlie1 DNA MER1_type -2521 240 5 313 237 85 25 chr15 25823558 25823676 -75556845 - MLT1I LTR MaLR -244 165 41 2379 75 7 0 chr15 25823683 25823975 -75556546 - AluY SINE Alu -9 302 9 1896 124 71 0 chr15 25824333 25824615 -75555906 - AluSx SINE Alu -10 302 1 262 295 9 62 chr15 25824699 25824811 -75555710 + MIR SINE MIR 136 241 -21 262 219 68 0 chr15 25825794 25825867 -75554654 + L1MEc LINE L1 1129 1206 -5217 * 366 242 10 20 chr15 25825866 25825965 -75554556 + L1MEc LINE L1 2677 2774 -4348 4138 257 60 15 chr15 25825986 25827412 -75553109 + L1MD2 LINE L1 3636 5126 -1815 3852 111 7 32 chr15 25827412 25828007 -75552514 - LTR12 LTR ERV1 -134 580 1 5147 209 45 32 chr15 25828008 25829999 -75550522 + L1MD2 LINE L1 5123 7145 -9 1537 215 9 25 chr15 25830018 25830343 -75550178 + L1MC1 LINE L1 6009 6328 -5 534 278 68 12 chr15 25830350 25830737 -75549784 + L1MEc LINE L1 2772 3145 -3796 323 201 36 65 chr15 25830800 25830908 -75549613 - L1M4b LINE L1 -5283 1263 1151 459 267 37 21 chr15 25830924 25831115 -75549406 - L1M4b LINE L1 -6335 207 14 1708 185 13 3 chr15 25831499 25831797 -75548724 + AluJo SINE Alu 1 301 -11 1674 124 31 99 chr15 25831856 25832178 -75548343 + AluSx SINE Alu 1 300 -12 21 57 0 0 chr15 25832654 25832689 -75547832 + AT_rich Low_complexity Low_complexity 1 35 0 328 208 50 97 chr15 25832834 25833043 -75547478 + L1MCc LINE L1 12 519 -5903 679 229 91 47 chr15 25833533 25833852 -75546669 + L1MCc LINE L1 1665 1997 -4944 1098 270 14 0 chr15 25834258 25834536 -75545985 - MLT1B-int LTR MaLR -770 601 320 635 64 0 0 chr15 25834536 25834614 -75545907 - AluY SINE Alu -16 295 218 860 261 32 16 chr15 25834616 25834865 -75545656 - MLT1B-int LTR MaLR -1118 253 1 1806 175 3 3 chr15 25834869 25835178 -75545343 - AluJb SINE Alu -1 311 3 195 184 0 0 chr15 25835858 25835896 -75544625 + (CA)n Simple_repeat Simple_repeat 1 38 0 215 240 30 20 chr15 25837337 25837437 -75543084 + (TA)n Simple_repeat Simple_repeat 1 101 0 2403 141 27 3 chr15 25837456 25837831 -75542690 - Tigger2 DNA MER2_type -1 2717 2334 8227 22 1 0 chr15 25837872 25839523 -75540998 + L1PA3 LINE L1 4507 6155 0 1759 141 3 21 chr15 25839664 25839948 -75540573 - L1PA16 LINE L1 0 6166 5888 199 267 0 78 chr15 25840305 25840421 -75540100 + L2 LINE L2 3203 3309 -4 21 0 0 0 chr15 25840748 25840769 -75539752 + AT_rich Low_complexity Low_complexity 1 21 0 489 200 78 9 chr15 25841440 25841555 -75538966 - MIR SINE MIR -103 159 37 1278 211 42 7 chr15 25841847 25842132 -75538389 + MLT1F LTR MaLR 243 537 -5 263 270 0 0 chr15 25842305 25842368 -75538153 - L2 LINE L2 -5 3308 3246 281 318 85 23 chr15 25842419 25842595 -75537926 - LTR16C LTR ERVL -218 273 87 2425 83 0 3 chr15 25842829 25843141 -75537380 + AluSq SINE Alu 1 311 -2 1434 224 55 22 chr15 25843607 25843969 -75536552 + MLT1A2 LTR MaLR 1 374 0 2436 91 0 0 chr15 25844333 25844641 -75535880 - AluY SINE Alu -3 308 1 216 229 0 29 chr15 25845053 25845123 -75535398 + T-rich Low_complexity Low_complexity 2 69 0 1510 173 41 77 chr15 25847888 25847940 -75532581 - MLT1B LTR MaLR -16 374 322 2169 107 4 0 chr15 25847940 25848259 -75532262 + AluSq SINE Alu 1 320 0 1510 173 41 77 chr15 25848259 25848593 -75531928 - MLT1B LTR MaLR -68 322 1 372 288 36 29 chr15 25848682 25848852 -75531669 + MIR SINE MIR 11 177 -60 186 43 0 0 chr15 25849262 25849285 -75531236 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1153 138 87 18 chr15 25849373 25849591 -75530930 - THE1C LTR MaLR 0 375 143 306 125 0 0 chr15 25849720 25849768 -75530753 + (TG)n Simple_repeat Simple_repeat 2 49 0 8714 169 94 20 chr15 25849773 25850403 -75530118 - L1MCa LINE L1 -4383 2043 1461 2246 138 9 20 chr15 25850403 25850744 -75529777 - MER1B DNA MER1_type 0 337 1 8714 169 94 20 chr15 25850744 25852013 -75528508 - L1MCa LINE L1 -4965 1461 3 632 259 101 50 chr15 25852463 25853425 -75527096 - L1MEc LINE L1 -4092 2304 1258 2238 110 0 0 chr15 25853427 25853718 -75526803 - AluSg SINE Alu -19 291 1 984 259 5 0 chr15 25853812 25854024 -75526497 + MER20 DNA MER1_type 1 213 -6 516 275 90 61 chr15 25854030 25854443 -75526078 - L1MEc LINE L1 -5018 1187 790 880 157 0 0 chr15 25854684 25854818 -75525703 - AluSx SINE Alu -17 295 162 44622 39 5 1 chr15 25854818 25860941 -75519580 - L1PA4 LINE L1 -3 6152 5 1282 129 0 0 chr15 25860941 25861119 -75519402 - AluSx SINE Alu -134 178 1 2032 155 12 75 chr15 25861446 25861591 -75518930 + L1MA4 LINE L1 5898 6051 -249 2354 92 0 0 chr15 25861591 25861886 -75518635 + AluSc SINE Alu 1 295 -14 2032 155 12 75 chr15 25861886 25862166 -75518355 + L1MA4 LINE L1 6051 6296 -4 214 321 55 28 chr15 25862862 25862971 -75517550 + L3 LINE CR1 770 881 -696 1900 246 53 45 chr15 25863714 25864447 -75516074 - L1ME3 LINE L1 -169 5993 5255 1470 196 103 56 chr15 25864459 25864837 -75515684 - MSTD LTR MaLR 0 396 1 2564 62 0 0 chr15 25864840 25865145 -75515376 + AluY SINE Alu 1 305 -6 476 295 19 0 chr15 25865263 25865419 -75515102 - L1ME3 LINE L1 -957 5189 5031 21 0 0 0 chr15 25865715 25865736 -75514785 + AT_rich Low_complexity Low_complexity 1 21 0 717 277 104 6 chr15 25866004 25866357 -75514164 - MER57A LTR ERV1 0 403 41 1913 141 0 0 chr15 25868138 25868415 -75512106 - AluSx SINE Alu -4 308 32 351 234 113 96 chr15 25868494 25868776 -75511745 - L1MC5 LINE L1 -980 6981 6695 270 0 0 0 chr15 25869087 25869117 -75511404 + (A)n Simple_repeat Simple_repeat 1 30 0 2103 136 0 13 chr15 25870668 25870984 -75509537 + AluSx SINE Alu 1 312 0 1381 257 117 45 chr15 25871154 25871780 -75508741 - HAL1 LINE L1 -24 2483 1813 2688 146 37 2 chr15 25871989 25872420 -75508101 - MER7C DNA MER2_type -156 446 1 1136 284 61 50 chr15 25872438 25872896 -75507625 - MER21B LTR ERV1 -396 467 5 360 241 288 4 chr15 25872904 25873140 -75507381 - HAL1 LINE L1 -695 1812 1510 390 213 16 39 chr15 25873241 25873368 -75507153 + CT-rich Low_complexity Low_complexity 3 126 0 703 254 130 52 chr15 25873377 25873507 -75507014 - HAL1 LINE L1 -1542 965 846 337 39 19 19 chr15 25873507 25873559 -75506962 + (TG)n Simple_repeat Simple_repeat 1 52 0 703 254 130 52 chr15 25873559 25873790 -75506731 - HAL1 LINE L1 -1661 846 576 2938 228 52 47 chr15 25874006 25874812 -75505709 + L1M4 LINE L1 5 814 -5728 333 220 11 33 chr15 25874812 25874903 -75505618 + L1M4 LINE L1 737 825 -5717 295 218 23 11 chr15 25874878 25874965 -75505556 + L1M4 LINE L1 727 814 -5728 * 296 164 16 0 chr15 25874963 25875024 -75505497 + L1M4 LINE L1 735 796 -5746 3116 249 64 45 chr15 25875030 25875321 -75505200 + L1M4 LINE L1 727 1011 -5814 2356 88 0 3 chr15 25875321 25875616 -75504905 - AluSc SINE Alu -15 294 1 3116 249 64 45 chr15 25875616 25877068 -75503453 + L1M4 LINE L1 1011 2647 -4178 1472 213 11 0 chr15 25877068 25877341 -75503180 + AluJo SINE Alu 3 278 -34 3116 249 64 45 chr15 25877341 25877603 -75502918 + L1M4 LINE L1 2647 2903 -3922 1226 105 0 0 chr15 25877619 25877781 -75502740 + AluSg/x SINE Alu 143 304 -8 848 227 35 11 chr15 25877782 25878045 -75502476 + L1M4 LINE L1 2871 3135 -3509 469 151 140 26 chr15 25878186 25878362 -75502159 + L1M4 LINE L1 5177 5370 -812 1705 193 0 3 chr15 25878401 25878712 -75501809 + AluJo SINE Alu 1 310 -2 235 218 18 0 chr15 25878714 25878769 -75501752 + L1MB7 LINE L1 6108 6163 -21 22 0 0 0 chr15 25878978 25879000 -75501521 + AT_rich Low_complexity Low_complexity 1 22 0 593 228 54 58 chr15 25879112 25879246 -75501275 - L1ME1 LINE L1 -5 6421 6287 180 0 0 0 chr15 25879246 25879266 -75501255 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 593 228 54 58 chr15 25879266 25879355 -75501166 - L1ME1 LINE L1 -139 6287 6199 * 2185 249 80 26 chr15 25879350 25879712 -75500809 - L1ME1 LINE L1 -816 5590 5249 2585 74 0 3 chr15 25879712 25880024 -75500497 - AluY SINE Alu 0 311 1 2185 249 80 26 chr15 25880024 25880532 -75499989 - L1ME1 LINE L1 -1157 5249 4673 2294 144 76 13 chr15 25880534 25880931 -75499590 + MSTB LTR MaLR 3 424 -2 9541 176 11 18 chr15 25880933 25882594 -75497927 + MSTB-int LTR MaLR 3 1651 0 2401 180 65 0 chr15 25882594 25882994 -75497527 + MSTB LTR MaLR 1 426 0 202 239 15 30 chr15 25882999 25883066 -75497455 + CT-rich Low_complexity Low_complexity 4 69 0 180 111 0 0 chr15 25883074 25883101 -75497420 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 4834 245 44 75 chr15 25883113 25883720 -75496801 - L1ME1 LINE L1 -1755 4651 4027 2055 100 25 4 chr15 25883720 25884039 -75496482 - AluSq SINE Alu 0 325 1 4834 245 44 75 chr15 25884039 25885692 -75494829 - L1ME1 LINE L1 -2379 4027 2460 6347 159 20 24 chr15 25885697 25886704 -75493817 - L1MC1 LINE L1 -1 6332 5330 2476 153 40 26 chr15 25886704 25887130 -75493391 - MSTB1 LTR MaLR 0 432 1 6347 159 20 24 chr15 25887130 25887566 -75492955 - L1MC1 LINE L1 -1003 5330 4894 12759 123 29 10 chr15 25887616 25890391 -75490130 + L1PA10 LINE L1 3373 6163 -5 3523 196 94 43 chr15 25890412 25891541 -75488980 - L1ME1 LINE L1 -3971 2435 1251 21 82 0 0 chr15 25891734 25891783 -75488738 + AT_rich Low_complexity Low_complexity 1 49 0 1253 144 0 6 chr15 25891944 25892125 -75488396 + AluSx SINE Alu 1 180 -132 1896 196 41 21 chr15 25892185 25892573 -75487948 + MSTD LTR MaLR 1 396 0 2192 115 14 0 chr15 25893925 25894220 -75486301 - AluSq SINE Alu -14 299 1 392 120 22 76 chr15 25894510 25894602 -75485919 + HsTC2 DNA Tc2 1 87 -1811 265 287 66 55 chr15 25894821 25895093 -75485428 - L1MEc LINE L1 -4706 1604 1330 31 26 0 0 chr15 25895096 25895134 -75485387 + AT_rich Low_complexity Low_complexity 1 38 0 2479 73 3 0 chr15 25895179 25895481 -75485040 + AluY SINE Alu 1 303 -8 10153 204 70 18 chr15 25895523 25896235 -75484286 - L1MC3 LINE L1 -39 8164 7490 180 77 0 0 chr15 25896235 25896261 -75484260 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 10153 204 70 18 chr15 25896261 25898185 -75482336 - L1MC3 LINE L1 -713 7490 5396 3307 226 54 82 chr15 25898209 25899804 -75480717 - L1MC3 LINE L1 -4850 1195 1 832 296 103 77 chr15 25899860 25901071 -75479450 - L1MEc LINE L1 -4872 1247 5 28 29 0 0 chr15 25901553 25901588 -75478933 + AT_rich Low_complexity Low_complexity 1 35 0 2323 84 40 0 chr15 25903741 25904039 -75476482 - AluY SINE Alu -1 310 1 281 256 0 67 chr15 25904112 25904202 -75476319 - MIR SINE MIR -60 148 65 1763 231 45 27 chr15 25904364 25904878 -75475643 - Charlie1b DNA MER1_type 0 523 1 378 221 31 24 chr15 25905363 25905490 -75475031 - L1M4 LINE L1 -777 5369 5242 1453 194 65 26 chr15 25906393 25906744 -75473777 + MLT1A1 LTR MaLR 1 365 0 342 0 0 0 chr15 25907964 25908002 -75472519 + (CA)n Simple_repeat Simple_repeat 2 39 0 2099 225 124 37 chr15 25910874 25911214 -75469307 - Charlie2 DNA MER1_type -33 2829 2520 1978 121 0 28 chr15 25911214 25911539 -75468982 - AluSx SINE Alu 0 317 1 2099 225 124 37 chr15 25911539 25912086 -75468435 - Charlie2 DNA MER1_type -342 2520 1864 732 69 0 0 chr15 25912305 25912392 -75468129 + AluSc SINE Alu 83 169 -140 1446 135 4 13 chr15 25912497 25912727 -75467794 + AluSg/x SINE Alu 83 310 0 888 309 56 47 chr15 25913046 25913964 -75466557 + L2 LINE L2 2373 3313 0 207 176 0 0 chr15 25914605 25914639 -75465882 + GA-rich Low_complexity Low_complexity 3 36 0 769 98 22 44 chr15 25914639 25914822 -75465699 + (GGA)n Simple_repeat Simple_repeat 2 180 0 284 215 21 21 chr15 25915647 25915740 -75464781 + L1M4c LINE L1 1132 1224 -5160 * 1720 226 51 23 chr15 25915739 25916856 -75463665 + L1M4c LINE L1 1540 2782 -3600 1013 265 109 39 chr15 25916856 25917275 -75463246 - MLT1C LTR MaLR 0 467 2 2192 133 3 46 chr15 25917539 25917907 -75462614 + MSTA LTR MaLR 1 352 -76 910 235 118 42 chr15 25918847 25919136 -75461385 - MER21B LTR ERV1 -62 801 491 68 42 0 0 chr15 25919136 25919232 -75461289 + AT_rich Low_complexity Low_complexity 1 96 0 382 146 126 215 chr15 25919488 25919735 -75460786 - MER21B LTR ERV1 -627 236 12 230 328 0 0 chr15 25919775 25919833 -75460688 + C-rich Low_complexity Low_complexity 4 61 0 181 264 56 56 chr15 25920577 25920649 -75459872 - MIR SINE MIR -70 138 67 3609 76 41 6 chr15 25920760 25921244 -75459277 - MER41A LTR ERV1 -53 501 1 530 267 40 65 chr15 25922339 25922586 -75457935 + MER46C DNA MER2_type 2 242 -96 459 320 32 20 chr15 25924107 25924354 -75456167 - L1M4 LINE L1 -6269 273 24 327 239 122 22 chr15 25924393 25924573 -75455948 + L1MEc LINE L1 1774 1971 -4425 22 35 0 0 chr15 25924621 25924650 -75455871 + AT_rich Low_complexity Low_complexity 1 29 0 372 130 0 0 chr15 25925010 25925079 -75455442 + (TC)n Simple_repeat Simple_repeat 2 70 0 261 0 0 0 chr15 25925080 25925109 -75455412 + (TA)n Simple_repeat Simple_repeat 1 29 0 238 185 62 0 chr15 25925111 25925192 -75455329 - L1M4c LINE L1 -5504 880 795 271 243 48 0 chr15 25925195 25925298 -75455223 + (TA)n Simple_repeat Simple_repeat 1 108 0 1017 252 82 18 chr15 25925299 25925628 -75454893 - MLT2D LTR ERVL -64 350 1 6077 168 45 37 chr15 25925630 25925856 -75454665 - ERVL-D LTR ERVL -11 5753 5530 2478 80 0 0 chr15 25925856 25926155 -75454366 + AluY SINE Alu 1 299 -12 6077 168 45 37 chr15 25926155 25926272 -75454249 - ERVL-D LTR ERVL -234 5530 5415 2299 125 0 0 chr15 25926272 25926584 -75453937 + AluSx SINE Alu 1 312 0 6077 168 45 37 chr15 25926584 25927408 -75453113 - ERVL-D LTR ERVL -349 5415 4576 1841 214 16 3 chr15 25928268 25928651 -75451870 - MLT1B LTR MaLR 0 390 3 806 183 154 6 chr15 25929022 25929054 -75451467 + AluJo SINE Alu 86 112 -200 192 77 0 0 chr15 25929054 25929080 -75451441 + (CAA)n Simple_repeat Simple_repeat 2 27 0 806 183 154 6 chr15 25929080 25929222 -75451299 + AluJo SINE Alu 112 286 -26 591 173 0 0 chr15 25929222 25929332 -75451189 + (TA)n Simple_repeat Simple_repeat 1 110 0 367 276 136 67 chr15 25929916 25930394 -75450127 - MLT1H1 LTR MaLR -8 547 37 1018 258 63 3 chr15 25932256 25932558 -75447963 - LTR16C LTR ERVL -22 469 150 2591 148 35 0 chr15 25933154 25933560 -75446961 + MSTC LTR MaLR 9 428 0 253 290 10 40 chr15 25933847 25933947 -75446574 - L2 LINE L2 -1 3271 3175 628 244 45 29 chr15 25934247 25934604 -75445917 + LTR37A LTR ERV1 26 424 -2 182 287 16 57 chr15 25934606 25934728 -75445793 - L2 LINE L2 -379 2934 2818 22 0 0 0 chr15 25934831 25934853 -75445668 + AT_rich Low_complexity Low_complexity 1 22 0 233 192 0 0 chr15 25935343 25935395 -75445126 - MIR SINE MIR -134 128 77 261 0 0 0 chr15 25935620 25935649 -75444872 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 413 263 0 0 chr15 25936852 25936947 -75443574 - MER94 DNA DNA -1 133 39 311 300 9 9 chr15 25937833 25937943 -75442578 - L1M4 LINE L1 -1160 4986 4877 25 0 0 0 chr15 25938163 25938188 -75442333 + AT_rich Low_complexity Low_complexity 1 25 0 349 326 54 44 chr15 25939324 25939711 -75440810 + L1M4 LINE L1 2133 2523 -3623 1346 201 13 42 chr15 25939973 25940282 -75440239 + MLT1A1 LTR MaLR 1 300 -65 184 338 25 12 chr15 25940994 25941074 -75439447 - MER5A DNA MER1_type -39 150 70 7113 242 78 35 chr15 25942036 25945815 -75434706 - L1MD2 LINE L1 -29 6724 2685 185 0 40 0 chr15 25945822 25945847 -75434674 + (TA)n Simple_repeat Simple_repeat 2 27 0 1616 213 76 52 chr15 25945847 25947759 -75432762 - L1MD2 LINE L1 -4073 2467 59 841 206 44 40 chr15 25947763 25948072 -75432449 - MLT1A2 LTR MaLR -4 405 97 399 286 101 68 chr15 25948805 25949172 -75431349 + L1MEd LINE L1 292 670 -5449 2191 121 3 0 chr15 25949439 25949746 -75430775 - AluSx SINE Alu -4 308 1 392 291 127 28 chr15 25950021 25950234 -75430287 + L1MEd LINE L1 849 1082 -5037 333 252 211 0 chr15 25950245 25950368 -75430153 - MIR SINE MIR 0 262 114 762 241 91 44 chr15 25950528 25950935 -75429586 - LTR37A LTR ERV1 0 426 1 452 294 53 50 chr15 25950949 25951377 -75429144 + L1MEd LINE L1 1213 1690 -800 2330 86 0 23 chr15 25951500 25951802 -75428719 + AluSx SINE Alu 5 299 -13 2687 26 3 3 chr15 25952038 25952349 -75428172 + AluYa5 SINE Alu 1 311 0 300 242 135 68 chr15 25952505 25952890 -75427631 + L1MEd LINE L1 2194 2604 -3525 200 114 29 0 chr15 25953013 25953048 -75427473 + (TG)n Simple_repeat Simple_repeat 1 36 0 629 167 19 0 chr15 25953128 25953236 -75427285 + L1MC/D LINE L1 5599 5708 -625 519 264 121 19 chr15 25953310 25953625 -75426896 + L1MEd LINE L1 3053 3399 -2730 6356 143 21 21 chr15 25953652 25954014 -75426507 - L1MC1 LINE L1 -5 6328 5968 2280 89 0 0 chr15 25954014 25954341 -75426180 - AluSx SINE Alu 0 327 1 6356 143 21 21 chr15 25954341 25955144 -75425377 - L1MC1 LINE L1 -365 5968 5161 10598 50 6 1 chr15 25955213 25957315 -75423206 - L1PA6 LINE L1 -4 6150 4047 267 119 68 8 chr15 25958260 25958378 -75422143 + (TG)n Simple_repeat Simple_repeat 2 126 0 245 143 68 15 chr15 25958392 25958660 -75421861 + (TG)n Simple_repeat Simple_repeat 1 282 0 321 114 60 20 chr15 25958696 25958845 -75421676 + (TG)n Simple_repeat Simple_repeat 1 155 0 239 318 56 0 chr15 25959471 25959578 -75420943 + L1ME LINE L1 5615 5727 -394 3832 27 0 0 chr15 25959906 25960344 -75420177 - L1PA3 LINE L1 -7 6148 5711 982 9 0 0 chr15 25960344 25960451 -75420070 - U6 snRNA snRNA 0 107 1 22 0 0 0 chr15 25962012 25962034 -75418487 + AT_rich Low_complexity Low_complexity 1 22 0 2400 230 20 52 chr15 25962037 25962120 -75418401 - L1MA9 LINE L1 -38 6274 6190 474 65 0 0 chr15 25962120 25962182 -75418339 + (TA)n Simple_repeat Simple_repeat 1 62 0 2400 230 20 52 chr15 25962182 25962854 -75417667 - L1MA9 LINE L1 -122 6190 5543 9747 205 34 13 chr15 25962865 25965209 -75415312 - L1MA9 LINE L1 -743 5403 3011 1056 187 60 60 chr15 25965225 25965508 -75415013 + L1MD2 LINE L1 6075 6357 -2 2046 114 4 0 chr15 25965916 25966188 -75414333 - AluSg SINE Alu -8 302 30 357 82 0 0 chr15 25973171 25973220 -75407301 + (TG)n Simple_repeat Simple_repeat 1 49 0 6385 17 1 0 chr15 25973552 25974265 -75406256 + L1PA3 LINE L1 5442 6155 0 244 233 29 24 chr15 25975950 25976034 -75404487 - MIR SINE MIR -55 153 69 1642 167 7 24 chr15 25976086 25976380 -75404141 - AluJo SINE Alu -23 289 1 2114 190 28 2 chr15 25977212 25977648 -75402873 - L1 LINE L1 -2369 3777 3331 2180 84 7 7 chr15 25977651 25977948 -75402573 - AluY SINE Alu -10 301 5 369 43 0 0 chr15 25977959 25978006 -75402515 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 56 0 0 chr15 25978103 25978139 -75402382 + GC_rich Low_complexity Low_complexity 1 36 0 1962 97 10 34 chr15 25979015 25979313 -75401208 + AluSq SINE Alu 1 291 -22 2058 86 0 95 chr15 25979314 25979651 -75400870 - AluSg SINE Alu -5 305 1 2355 68 0 10 chr15 25979834 25980160 -75400361 - AluY SINE Alu 0 311 1 1350 122 5 0 chr15 25980160 25980349 -75400172 + Charlie3 DNA MER1_type 2517 2706 -4 1304 146 5 0 chr15 25980351 25980571 -75399950 - L1MB3 LINE L1 -259 5924 5704 2067 130 0 3 chr15 25980646 25980931 -75399590 - AluSx SINE Alu -28 284 1 3655 202 44 20 chr15 25980931 25981891 -75398630 - L1MB3 LINE L1 -724 5460 4475 2425 86 0 0 chr15 25982142 25982445 -75398076 + AluY SINE Alu 1 303 -8 1680 155 17 24 chr15 25982582 25982872 -75397649 - AluJb SINE Alu -17 295 8 405 113 141 0 chr15 25983019 25983090 -75397431 - AluJ/FRAM SINE Alu -16 296 216 2039 85 0 0 chr15 25983356 25983603 -75396918 - AluSg SINE Alu -63 247 1 940 95 0 0 chr15 25984116 25984232 -75396289 + AluSq/x SINE Alu 1 116 -197 801 144 8 0 chr15 25984232 25984357 -75396164 + AluSc SINE Alu 166 291 -18 1165 155 5 0 chr15 25984357 25984544 -75395977 + AluSx SINE Alu 121 308 -4 252 299 41 0 chr15 25984642 25984739 -75395782 + MIR SINE MIR 92 192 -70 2457 86 0 13 chr15 25985715 25986030 -75394491 - AluY SINE Alu 0 311 1 1626 71 40 22 chr15 25986315 25986541 -75393980 + MER30 DNA MER1_type 1 230 0 972 155 42 237 chr15 25986632 25986782 -75393739 - L1MD3 LINE L1 -10 7985 7808 622 204 15 8 chr15 25986782 25986914 -75393607 + U8 snRNA snRNA 4 136 0 972 155 42 237 chr15 25986914 25987138 -75393383 - L1MD3 LINE L1 -187 7808 7542 195 42 0 0 chr15 25987138 25987162 -75393359 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2003 110 0 0 chr15 25987163 25987426 -75393095 - AluSg SINE Alu -47 263 1 972 155 42 237 chr15 25987426 25987572 -75392949 - L1MD3 LINE L1 -258 7737 7564 328 279 38 51 chr15 25988044 25988202 -75392319 + L2 LINE L2 3158 3313 0 23 33 0 0 chr15 25988295 25988325 -75392196 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr15 25989089 25989117 -75391404 + AT_rich Low_complexity Low_complexity 1 28 0 2095 119 3 0 chr15 25990498 25990792 -75389729 + AluSq SINE Alu 19 313 0 24 67 0 0 chr15 25991423 25991468 -75389053 + AT_rich Low_complexity Low_complexity 1 45 0 827 150 0 15 chr15 25991773 25991906 -75388615 - FLAM_C SINE Alu -1 132 2 309 263 130 47 chr15 25992227 25992440 -75388081 + MIR SINE MIR 3 225 -37 1857 79 126 14 chr15 25992440 25992718 -75387803 - AluY SINE Alu -2 309 1 406 306 32 24 chr15 25993680 25993928 -75386593 - L1ME LINE L1 -400 5721 5472 241 173 0 0 chr15 25994011 25994063 -75386458 - L1MB3 LINE L1 -14 6169 6118 1770 95 0 9 chr15 25994063 25994294 -75386227 + AluY SINE Alu 68 296 -15 27311 103 14 10 chr15 25995612 25999554 -75380967 - L1P LINE L1 -2180 3966 11 406 272 38 46 chr15 25999565 25999804 -75380717 + L1M4 LINE L1 3725 3961 -2185 429 276 31 69 chr15 26000286 26000547 -75379974 + L1M4 LINE L1 4578 4828 -1318 1392 153 25 8 chr15 26000680 26000915 -75379606 + L1PA16 LINE L1 5919 6157 -9 876 153 7 0 chr15 26000923 26001098 -75379423 + FRAM SINE Alu 10 185 0 30 27 0 0 chr15 26003519 26003556 -75376965 + AT_rich Low_complexity Low_complexity 1 37 0 1668 180 3 23 chr15 26003557 26003862 -75376659 - AluJo SINE Alu -11 301 3 245 320 0 13 chr15 26004486 26004561 -75375960 + CT-rich Low_complexity Low_complexity 4 77 0 1643 202 85 50 chr15 26005580 26005669 -75374852 - MER74A LTR ERVL -24 534 450 2220 100 3 3 chr15 26005669 26005958 -75374563 + AluSg SINE Alu 1 289 -21 1643 202 85 50 chr15 26005958 26006384 -75374137 - MER74A LTR ERVL -108 450 1 2367 90 0 7 chr15 26006645 26006945 -75373576 + AluY SINE Alu 1 298 -13 413 179 11 42 chr15 26008382 26008477 -75372044 + MLT1A2 LTR MaLR 14 105 -269 820 237 17 23 chr15 26008485 26008658 -75371863 + MER21B LTR ERV1 12 183 -680 964 217 83 24 chr15 26008979 26009232 -75371289 - L1MB8 LINE L1 0 6178 5911 243 0 0 0 chr15 26009744 26009771 -75370750 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1497 182 28 21 chr15 26009775 26010066 -75370455 - AluJo SINE Alu -19 293 1 201 39 0 0 chr15 26010200 26010226 -75370295 + (CA)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr15 26011148 26011170 -75369351 + AT_rich Low_complexity Low_complexity 1 22 0 364 264 91 8 chr15 26012100 26012221 -75368300 - MIR3 SINE MIR -40 168 38 1830 164 12 84 chr15 26013664 26014078 -75366443 - MLT1B LTR MaLR -4 386 3 924 199 49 29 chr15 26014431 26014677 -75365844 - MLT1A1 LTR MaLR -16 349 99 3121 213 81 39 chr15 26014718 26015485 -75365036 - MER21B LTR ERV1 -53 810 12 413 179 11 42 chr15 26015493 26015588 -75364933 - MLT1A1 LTR MaLR -269 105 14 2254 109 0 13 chr15 26016446 26016748 -75363773 - AluSg SINE Alu -12 298 1 1066 147 0 40 chr15 26017768 26017945 -75362576 + FRAM SINE Alu 1 40 0 289 309 0 0 chr15 26019157 26019241 -75361280 + MIR3 SINE MIR 73 156 -52 480 230 111 15 chr15 26019858 26019993 -75360528 + MER58A DNA MER1_type 1 148 0 868 263 55 15 chr15 26020097 26020560 -75359961 - MER119 DNA MER1_type -1 582 5 183 146 122 0 chr15 26020585 26020626 -75359895 - MIR SINE MIR -69 139 94 204 40 0 0 chr15 26021955 26021980 -75358541 + (TTTTTA)n Simple_repeat Simple_repeat 6 30 0 1532 88 0 16 chr15 26022774 26022968 -75357553 - AluY SINE Alu -47 264 74 209 114 29 0 chr15 26023238 26023273 -75357248 + (TG)n Simple_repeat Simple_repeat 1 36 0 902 301 68 37 chr15 26023824 26024416 -75356105 - L1MC4a LINE L1 -1915 6153 5544 332 332 93 18 chr15 26025009 26025235 -75355286 - L1MC4a LINE L1 -1604 4802 4560 280 317 106 22 chr15 26025278 26025638 -75354883 - L1MC4a LINE L1 -1949 4457 4068 22 0 0 0 chr15 26025935 26025957 -75354564 + AT_rich Low_complexity Low_complexity 1 22 0 1383 171 95 29 chr15 26027020 26027212 -75353309 - L1MB3 LINE L1 -1 6182 5959 2163 131 0 3 chr15 26027212 26027518 -75353003 - AluSx SINE Alu -7 305 1 1383 171 95 29 chr15 26027518 26027641 -75352880 - L1MB3 LINE L1 -224 5959 5846 2126 99 16 59 chr15 26027645 26027968 -75352553 - AluSx SINE Alu -3 309 1 346 333 45 31 chr15 26027982 26028202 -75352319 - L1MC4a LINE L1 -3044 3362 3134 632 125 0 29 chr15 26028202 26028306 -75352215 - HY3 scRNA scRNA 0 101 1 346 333 45 31 chr15 26028306 26028442 -75352079 - L1MC4a LINE L1 -3272 3134 3001 2318 225 149 19 chr15 26028712 26029423 -75351098 - MER21B LTR ERV1 -31 832 40 437 205 13 0 chr15 26029462 26029540 -75350981 - MER21B LTR ERV1 -773 90 12 2283 99 0 0 chr15 26031931 26032224 -75348297 - AluSx SINE Alu -13 299 7 1770 168 36 0 chr15 26032229 26032538 -75347983 + MER44D DNA MER2_type 18 607 -2 2071 156 33 0 chr15 26033350 26033716 -75346805 + MLT1B LTR MaLR 2 379 -11 208 270 101 11 chr15 26033917 26034006 -75346515 - MIR SINE MIR -72 136 40 1140 121 0 0 chr15 26034222 26034379 -75346142 - AluSp SINE Alu -17 296 140 2234 117 0 0 chr15 26035111 26035411 -75345110 + AluSx SINE Alu 1 300 -12 28689 31 4 4 chr15 26036384 26042545 -75337976 + L1PA3 LINE L1 7 6155 0 1562 226 41 13 chr15 26042620 26043085 -75337436 - L1MC4a LINE L1 -5264 1145 668 546 266 172 10 chr15 26043117 26043519 -75337002 - L1MC4a LINE L1 -5934 475 9 1998 204 31 47 chr15 26044007 26044156 -75336365 + MER90 LTR ERV1 6 156 -458 2506 72 0 3 chr15 26044156 26044460 -75336061 + AluY SINE Alu 1 303 -8 1998 204 31 47 chr15 26044460 26044883 -75335638 + MER90 LTR ERV1 156 610 -4 2029 112 49 3 chr15 26045647 26045933 -75334588 - AluSx SINE Alu -13 299 1 241 145 72 58 chr15 26046281 26046350 -75334171 + MER53 DNA DNA 119 188 -1 1754 213 81 29 chr15 26047627 26048107 -75332414 - MLT1D LTR MaLR 0 505 1 208 320 102 31 chr15 26048325 26048453 -75332068 - MIR SINE MIR -35 227 91 378 229 35 83 chr15 26048771 26048885 -75331636 - MER5A DNA MER1_type -6 183 75 1776 139 40 7 chr15 26048885 26049201 -75331320 - AluY SINE Alu 0 326 2 378 229 35 83 chr15 26049201 26049229 -75331292 - MER5A DNA MER1_type -114 75 47 1869 118 129 26 chr15 26049272 26049612 -75330909 - THE1C LTR MaLR 0 375 1 2061 88 25 63 chr15 26051373 26051692 -75328829 + AluY SINE Alu 1 307 -4 332 265 131 29 chr15 26052592 26052837 -75327684 + L1MC4a LINE L1 970 1239 -4880 46 46 0 46 chr15 26052948 26053056 -75327465 + AT_rich Low_complexity Low_complexity 1 103 0 344 268 76 82 chr15 26053320 26053648 -75326873 + L1MC4a LINE L1 3613 3938 -2191 336 252 69 23 chr15 26054214 26054345 -75326176 - MLT1J1 LTR MaLR -167 279 143 1156 262 78 31 chr15 26054394 26054818 -75325703 - MLT1J1 LTR MaLR -2 444 1 7982 34 0 3 chr15 26054980 26056187 -75324334 + L1PA4 LINE L1 4951 6154 -1 748 211 79 152 chr15 26056278 26056503 -75324018 - MLT1A1 LTR MaLR 0 365 180 2189 138 76 15 chr15 26056503 26056844 -75323677 - THE1B LTR MaLR -2 362 1 748 211 79 152 chr15 26056844 26057012 -75323509 - MLT1A1 LTR MaLR -185 180 1 2307 173 38 26 chr15 26057069 26057496 -75323025 - MSTB1 LTR MaLR 0 432 1 1780 170 22 41 chr15 26057604 26057969 -75322552 + L1MB3 LINE L1 5798 6155 -28 21 57 0 0 chr15 26057977 26058012 -75322509 + AT_rich Low_complexity Low_complexity 1 35 0 308 292 49 49 chr15 26058237 26058463 -75322058 + L1MC4a LINE L1 4998 5223 -906 763 326 110 12 chr15 26058479 26059050 -75321471 + L1MC4a LINE L1 5239 5865 -1926 307 264 8 72 chr15 26059228 26059353 -75321168 - MLT1H LTR MaLR -238 311 195 271 308 54 32 chr15 26060347 26060532 -75319989 + ERVL LTR ERVL 514 702 -5062 781 334 46 13 chr15 26061012 26061421 -75319100 + ERVL LTR ERVL 2644 3111 -2638 2138 114 0 0 chr15 26061450 26061778 -75318743 + AluSg SINE Alu 1 328 0 1200 283 114 27 chr15 26061793 26062663 -75317858 + ERVL LTR ERVL 3229 4216 -1548 486 351 101 4 chr15 26062835 26063083 -75317438 + ERVL LTR ERVL 4769 5040 -724 1683 225 46 38 chr15 26063214 26063387 -75317134 + MLT1C LTR MaLR 3 173 -294 2416 71 7 0 chr15 26063387 26063684 -75316837 + AluY SINE Alu 1 299 -12 1683 225 46 38 chr15 26063684 26063963 -75316558 + MLT1C LTR MaLR 173 459 -8 411 266 0 9 chr15 26063967 26064076 -75316445 + ERVL LTR ERVL 5172 5279 -485 5900 132 20 28 chr15 26064198 26064220 -75316301 + MER49 LTR ERV1 1 22 -901 1843 136 0 74 chr15 26064220 26064543 -75315978 + AluSx SINE Alu 1 299 -13 5900 132 20 28 chr15 26064543 26065450 -75315071 + MER49 LTR ERV1 22 923 0 576 191 18 12 chr15 26066410 26066578 -75313943 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 2275 115 3 0 chr15 26067881 26068186 -75312335 - AluSq SINE Alu -5 308 3 2262 104 0 7 chr15 26068197 26068505 -75312016 - AluY SINE Alu -5 306 1 21955 195 46 6 chr15 26069801 26073970 -75306551 - ERVL LTR ERVL -788 4976 550 3304 252 53 26 chr15 26074108 26075351 -75305170 + L1MC2 LINE L1 2626 3902 -2244 2000 143 181 8 chr15 26075351 26075716 -75304805 + MSTA LTR MaLR 1 428 0 9905 132 12 85 chr15 26075718 26077420 -75303101 + MSTA-int LTR MaLR 3 1580 0 403 113 238 0 chr15 26077420 26077500 -75303021 + MSTA LTR MaLR 1 99 -329 985 145 134 0 chr15 26077502 26077681 -75302840 + MSTA LTR MaLR 226 428 0 1294 253 6 10 chr15 26077681 26077993 -75302528 + L1MC2 LINE L1 3898 4208 -1938 1402 247 118 34 chr15 26077996 26078113 -75302408 - MLT1D LTR MaLR 0 505 399 2356 151 28 13 chr15 26078113 26078503 -75302018 + MSTD LTR MaLR 1 396 0 1402 247 118 34 chr15 26078503 26078851 -75301670 - MLT1D LTR MaLR -106 399 1 865 263 23 7 chr15 26078855 26079155 -75301366 + L1MC2 LINE L1 4211 4515 -1631 1043 327 86 22 chr15 26079170 26079862 -75300659 + L1MA9 LINE L1 106 770 -5185 423 245 71 71 chr15 26079927 26080082 -75300439 + L1MA9 LINE L1 635 789 -5166 11728 197 21 28 chr15 26080083 26082397 -75298124 + L1MA9 LINE L1 2544 4851 -1349 2176 99 0 38 chr15 26082397 26082711 -75297810 + AluSp SINE Alu 1 302 -11 11728 197 21 28 chr15 26082711 26083537 -75296984 + L1MA9 LINE L1 4851 5681 -519 306 160 20 120 chr15 26083563 26083663 -75296858 - L1MC4 LINE L1 -1339 6703 6614 301 233 35 23 chr15 26083600 26083686 -75296835 + L1MC4 LINE L1 6615 6701 -1341 * 2759 163 27 17 chr15 26083703 26084226 -75296295 + L1MA9 LINE L1 5673 6200 0 2951 206 73 10 chr15 26084230 26085221 -75295300 + L1MC2 LINE L1 4980 6034 -310 2795 98 40 10 chr15 26085222 26085622 -75294899 - L1MA2 LINE L1 0 6304 5893 796 171 76 0 chr15 26085657 26085815 -75294706 + L1MC3 LINE L1 7118 7287 -498 1453 213 53 36 chr15 26085818 26086042 -75294479 + L1MC3 LINE L1 7364 7600 -185 2397 75 3 0 chr15 26086042 26086336 -75294185 + AluSp SINE Alu 1 295 -18 1453 213 53 36 chr15 26086336 26086524 -75293997 + L1MC3 LINE L1 7600 7783 -2 240 244 134 12 chr15 26086570 26086652 -75293869 - LTR67 LTR ERVL -367 190 99 1010 230 8 28 chr15 26087054 26087302 -75293219 - LTR53 LTR ERVL -88 431 189 293 266 25 0 chr15 26089191 26089270 -75291251 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 189 215 25 13 chr15 26089282 26089361 -75291160 + (TA)n Simple_repeat Simple_repeat 2 81 0 2649 29 7 3 chr15 26089398 26089705 -75290816 - AluY SINE Alu -3 308 1 212 359 26 0 chr15 26091761 26091839 -75288682 - L2 LINE L2 -553 2761 2682 2508 198 29 2 chr15 26092510 26092986 -75287535 - L1MB3 LINE L1 -2 6181 5693 397 343 18 24 chr15 26093172 26093341 -75287180 + MIR SINE MIR 88 255 -7 1527 150 108 119 chr15 26093679 26093958 -75286563 + MLT1C LTR MaLR 1 274 -193 2823 148 14 5 chr15 26093958 26094377 -75286144 - MSTB LTR MaLR 0 426 4 1527 150 108 119 chr15 26094377 26094569 -75285952 + MLT1C LTR MaLR 274 467 0 2120 121 3 7 chr15 26095542 26095840 -75284681 - AluSx SINE Alu -13 299 3 2554 44 0 0 chr15 26096186 26096482 -75284039 - AluY SINE Alu -14 297 2 24 32 0 0 chr15 26096717 26096748 -75283773 + AT_rich Low_complexity Low_complexity 1 31 0 7476 143 26 13 chr15 26097365 26098578 -75281943 - Tigger3b DNA MER2_type -3 1228 1 2208 114 13 0 chr15 26098798 26099226 -75281295 + AluSx SINE Alu 1 432 0 1096 47 0 0 chr15 26099261 26099388 -75281133 - L1PA2 LINE L1 -2 6153 6027 2185 78 0 31 chr15 26099672 26099993 -75280528 - AluY SINE Alu 0 311 1 2613 42 0 3 chr15 26100291 26100603 -75279918 - AluY SINE Alu 0 311 1 240 218 26 39 chr15 26100833 26100911 -75279610 + MIR SINE MIR 168 244 -18 618 300 91 72 chr15 26101027 26101788 -75278733 - L1MC4 LINE L1 -136 7906 7132 4521 210 63 38 chr15 26102066 26103647 -75276874 - L1MD2 LINE L1 -14 6345 4741 2601 122 29 67 chr15 26103679 26104129 -75276392 + Tigger2a DNA MER2_type 1 433 -1 1583 181 59 25 chr15 26104136 26104457 -75276064 + MER2 DNA MER2_type 1 332 -13 349 181 194 0 chr15 26104463 26104535 -75275986 + MER21B LTR ERV1 11 96 -767 3110 231 46 10 chr15 26104535 26105434 -75275087 - L1MD2 LINE L1 -2200 3946 3016 1674 251 116 27 chr15 26105407 26106733 -75273788 - L1MDa LINE L1 -2525 3690 1740 * 348 209 118 0 chr15 26106734 26106875 -75273646 - L1MDa LINE L1 -4636 1579 1339 2358 95 3 13 chr15 26106879 26107194 -75273327 - AluSp SINE Alu -1 312 1 1012 145 0 7 chr15 26107196 26107348 -75273173 - FRAM SINE Alu -5 171 21 742 197 8 0 chr15 26107588 26107715 -75272806 - FLAM_C SINE Alu -3 130 3 983 273 48 28 chr15 26107771 26108171 -75272350 - L1MDa LINE L1 -5631 765 358 260 226 10 78 chr15 26108217 26108319 -75272202 - L1MDa LINE L1 -6013 383 289 3270 130 35 0 chr15 26108370 26108879 -75271642 - Tigger1 DNA MER2_type -420 1998 1472 24 32 0 0 chr15 26109266 26109297 -75271224 + AT_rich Low_complexity Low_complexity 1 31 0 2132 189 13 30 chr15 26110365 26110762 -75269759 - MLT1B LTR MaLR 0 390 1 421 236 79 21 chr15 26111652 26111792 -75268729 + MER67A LTR ERV1 396 543 0 556 152 29 9 chr15 26112435 26112540 -75267981 - MLT1B LTR MaLR 0 374 268 590 215 55 140 chr15 26113094 26113387 -75267134 - MLT1B LTR MaLR -122 268 1 1044 280 151 44 chr15 26113463 26114287 -75266234 + HAL1 LINE L1 957 1868 -639 681 203 36 0 chr15 26114505 26114643 -75265878 + MER5A DNA MER1_type 22 164 -25 263 242 61 53 chr15 26114530 26114662 -75265859 - MER5A DNA MER1_type -35 154 22 * 713 244 23 0 chr15 26114672 26114848 -75265673 + MER58A DNA MER1_type 45 224 0 13744 102 109 17 chr15 26115660 26115868 -75264653 - L1PBa LINE L1 -3752 3110 2923 1787 150 44 7 chr15 26115868 26116161 -75264360 - AluSx SINE Alu -8 304 1 13744 102 109 17 chr15 26116161 26116172 -75264349 - L1PBa LINE L1 -3939 2923 2914 2185 66 27 40 chr15 26116172 26116473 -75264048 - AluY SINE Alu -14 297 1 13744 102 109 17 chr15 26116473 26118516 -75262005 - L1PBa LINE L1 -3948 2914 634 1109 155 26 0 chr15 26118516 26118709 -75261812 - L1PBa LINE L1 -6663 200 3 729 94 0 0 chr15 26119367 26119463 -75261058 - LOR1a LTR ERV1 -401 96 1 993 108 28 34 chr15 26119463 26119639 -75260882 - L1MB4 LINE L1 -317 5863 5689 699 151 60 12 chr15 26119646 26119781 -75260740 - L1MB4 LINE L1 -711 5463 5315 2147 108 10 3 chr15 26119781 26120078 -75260443 - AluSx SINE Alu -13 299 1 699 151 60 12 chr15 26120078 26120109 -75260412 - L1MB4 LINE L1 -859 5315 5287 2034 114 3 17 chr15 26120491 26120789 -75259732 + AluSq SINE Alu 12 305 -8 691 170 44 11 chr15 26120791 26121057 -75259464 + L1MA9 LINE L1 5942 6312 0 24 0 0 0 chr15 26121060 26121084 -75259437 + AT_rich Low_complexity Low_complexity 1 24 0 3211 203 12 9 chr15 26121168 26121852 -75258669 + L1 LINE L1 3832 4517 -1629 271 319 60 9 chr15 26122581 26122697 -75257824 - MIR SINE MIR -56 152 31 1640 198 3 13 chr15 26122705 26123008 -75257513 + AluJo SINE Alu 1 300 -12 704 133 0 0 chr15 26123012 26123110 -75257411 - AluSg/x SINE Alu -10 300 203 2017 148 3 3 chr15 26123611 26123908 -75256613 - AluSx SINE Alu -15 297 1 32 0 0 0 chr15 26124295 26124327 -75256194 + AT_rich Low_complexity Low_complexity 1 32 0 1232 279 99 25 chr15 26124455 26124939 -75255582 + MLT1E LTR MaLR 1 520 -73 11683 28 0 0 chr15 26125039 26127104 -75253417 + L1PA3 LINE L1 4090 6155 0 2488 77 0 0 chr15 26127126 26127437 -75253084 + AluY SINE Alu 1 311 0 205 306 16 0 chr15 26128413 26128475 -75252046 - L2 LINE L2 -219 3053 2991 339 91 73 0 chr15 26128479 26128534 -75251987 + L1MB1 LINE L1 5789 5847 -342 228 356 30 15 chr15 26128999 26129131 -75251390 - MLT1I LTR MaLR -40 369 236 429 277 106 0 chr15 26129923 26130064 -75250457 - L1ME LINE L1 -484 5669 5514 2012 208 59 13 chr15 26130099 26130571 -75249950 - L1PA15 LINE L1 -1411 4735 4242 * 4117 212 23 37 chr15 26130566 26132027 -75248494 + L1PA15 LINE L1 4731 6164 -1 1011 286 58 25 chr15 26132036 26132754 -75247767 - L1ME LINE L1 -694 5453 4713 1782 141 10 47 chr15 26132807 26133104 -75247417 + AluJo SINE Alu 3 288 -24 784 112 5 53 chr15 26133131 26133319 -75247202 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 1983 194 29 0 chr15 26133326 26133707 -75246814 + L1MA8 LINE L1 5894 6285 -6 2198 99 41 0 chr15 26133716 26134010 -75246511 + AluSp SINE Alu 1 306 -7 2910 56 0 6 chr15 26134018 26134360 -75246161 + L1PA8 LINE L1 5825 6164 -8 3038 233 74 26 chr15 26134495 26135439 -75245082 - L1MC3 LINE L1 -8 7777 6789 521 238 105 68 chr15 26135413 26135661 -75244860 - L1ME LINE L1 -1978 4151 3895 * 190 260 78 39 chr15 26136577 26136654 -75243867 - MIR SINE MIR -113 149 70 248 302 0 0 chr15 26136831 26136894 -75243627 - MIR SINE MIR 0 262 200 2161 115 0 7 chr15 26136921 26137216 -75243305 + AluSx SINE Alu 1 293 -19 261 254 231 6 chr15 26137356 26137529 -75242992 - MLT1I LTR MaLR -197 212 1 413 259 14 58 chr15 26137546 26137685 -75242836 - MIR SINE MIR -58 150 18 2142 89 11 0 chr15 26137691 26137997 -75242524 - AluSp SINE Alu 0 309 1 313 183 0 0 chr15 26138001 26138061 -75242460 - L1MA8 LINE L1 0 6291 6232 2953 183 29 11 chr15 26138095 26138648 -75241873 - L1MA8 LINE L1 -47 6244 5682 216 282 150 77 chr15 26138703 26138923 -75241598 - MIR SINE MIR -21 241 6 336 337 10 10 chr15 26139081 26139182 -75241339 - MER91B DNA MER1_type 0 190 90 289 343 9 9 chr15 26139199 26139304 -75241217 - MER91B DNA MER1_type -61 129 25 390 340 125 24 chr15 26139684 26139972 -75240549 + L3 LINE CR1 733 1049 -528 29791 39 34 3 chr15 26140612 26144452 -75236069 + L1P LINE L1 1 3961 -2185 379 287 30 43 chr15 26144589 26144753 -75235768 - L1ME LINE L1 -2775 3354 3193 21 36 0 0 chr15 26144756 26144784 -75235737 + AT_rich Low_complexity Low_complexity 1 28 0 341 214 22 0 chr15 26144857 26144946 -75235575 - L1MC5 LINE L1 -72 7889 7799 2232 124 7 0 chr15 26145049 26145356 -75235165 - AluSx SINE Alu -3 309 1 532 332 84 8 chr15 26145433 26145683 -75234838 + L2 LINE L2 3045 3313 0 735 169 11 56 chr15 26146179 26146357 -75234164 - MER77 LTR ERV1 -20 585 416 * 1120 165 30 121 chr15 26146356 26146653 -75233868 - MER77 LTR ERV1 -335 270 1 393 290 65 0 chr15 26146653 26146777 -75233744 - L1M4 LINE L1 -1442 5406 5275 317 342 97 15 chr15 26147047 26147243 -75233278 - L1M4 LINE L1 -2532 4316 4105 511 234 69 58 chr15 26147287 26147475 -75233046 + MLT1F LTR MaLR 163 352 -190 189 0 0 0 chr15 26147475 26147496 -75233025 + (T)n Simple_repeat Simple_repeat 1 21 0 206 191 48 0 chr15 26147880 26147922 -75232599 - MIR SINE MIR -116 146 103 361 263 98 103 chr15 26148148 26148700 -75231821 - L1M4 LINE L1 -5516 1333 785 48 72 0 0 chr15 26150364 26150461 -75230060 + GC_rich Low_complexity Low_complexity 1 97 0 28 29 0 0 chr15 26150477 26150512 -75230009 + GC_rich Low_complexity Low_complexity 1 35 0 27 35 0 0 chr15 26150714 26150743 -75229778 + GC_rich Low_complexity Low_complexity 1 29 0 597 259 33 24 chr15 26150771 26150983 -75229538 + MLT1F LTR MaLR 329 542 0 365 247 111 74 chr15 26151035 26151225 -75229296 - L1ME LINE L1 -3283 2846 2650 486 349 72 16 chr15 26151309 26151613 -75228908 - L1ME LINE L1 -3670 2459 2139 1274 202 55 2 chr15 26151613 26152005 -75228516 - LTR53 LTR ERVL -12 507 8 630 254 88 111 chr15 26152465 26152898 -75227623 + LTR16A LTR ERVL 8 430 -20 318 353 31 36 chr15 26152905 26153129 -75227392 - L1ME LINE L1 -5524 595 373 294 293 104 6 chr15 26153259 26153423 -75227098 - L1ME LINE L1 -5926 193 14 377 195 81 0 chr15 26154128 26154215 -75226306 + MLT1F1 LTR MaLR 474 567 0 1709 198 29 3 chr15 26158737 26159086 -75221435 + MLT2D LTR ERVL 1 358 -56 200 146 0 42 chr15 26159155 26159203 -75221318 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 343 102 0 0 chr15 26159233 26159282 -75221239 + MLT2D LTR ERVL 349 397 0 246 255 0 0 chr15 26160095 26160139 -75220382 + CT-rich Low_complexity Low_complexity 1 47 -4 2263 117 3 0 chr15 26160139 26160439 -75220082 - AluSx SINE Alu -11 301 1 687 325 60 39 chr15 26160506 26160974 -75219547 - L2 LINE L2 0 3313 2836 201 94 0 0 chr15 26161459 26161491 -75219030 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 410 330 53 15 chr15 26161520 26161726 -75218795 - L1M4 LINE L1 -2712 3434 3221 245 250 31 0 chr15 26161733 26161797 -75218724 - L1M4 LINE L1 -2562 3584 3519 21 0 0 0 chr15 26161810 26161831 -75218690 + AT_rich Low_complexity Low_complexity 1 21 0 2050 124 0 20 chr15 26161841 26162140 -75218381 + AluSx SINE Alu 1 293 -19 270 0 0 0 chr15 26162270 26162300 -75218221 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1999 105 4 15 chr15 26162300 26162439 -75218082 - AluSc SINE Alu -27 282 146 2330 102 0 7 chr15 26162439 26162743 -75217778 - AluSg1 SINE Alu -7 302 1 1999 105 4 15 chr15 26162743 26162870 -75217651 - AluSc SINE Alu -163 146 19 325 294 98 34 chr15 26162879 26163114 -75217407 - LTR33 LTR ERVL -8 513 264 305 250 0 81 chr15 26163186 26163310 -75217211 - LTR33 LTR ERVL -407 114 1 548 324 32 55 chr15 26163488 26163741 -75216780 + HAL1 LINE L1 1162 1408 -1099 348 313 137 27 chr15 26163716 26163972 -75216549 + L1M4 LINE L1 4412 4695 -1451 * 4352 264 66 39 chr15 26164713 26166274 -75214247 + L1M3c LINE L1 1 1518 -4692 1506 153 4 0 chr15 26166274 26166509 -75214012 + MER46A DNA MER2_type 1 236 0 4352 264 66 39 chr15 26166509 26167418 -75213103 + L1M3c LINE L1 1518 2401 -3809 279 0 0 0 chr15 26167418 26167449 -75213072 + (CA)n Simple_repeat Simple_repeat 2 32 0 4352 264 66 39 chr15 26167449 26168198 -75212323 + L1M3c LINE L1 2401 3128 -3082 2158 130 0 0 chr15 26168198 26168517 -75212004 + AluSx SINE Alu 1 319 0 4352 264 66 39 chr15 26168517 26169046 -75211475 + L1M3c LINE L1 3128 3598 -2612 1534 112 0 0 chr15 26169046 26169243 -75211278 + AluSx SINE Alu 1 197 -115 4352 264 66 39 chr15 26169243 26169489 -75211032 + L1M3c LINE L1 3598 3836 -2374 1279 201 81 24 chr15 26169489 26169835 -75210686 - MSTB2 LTR MaLR -68 379 24 1307 196 159 20 chr15 26169993 26170339 -75210182 + MSTD LTR MaLR 1 394 -2 22 35 0 0 chr15 26170954 26170983 -75209538 + AT_rich Low_complexity Low_complexity 1 29 0 2242 70 0 0 chr15 26172040 26172311 -75208210 - AluSc SINE Alu -9 300 30 199 259 35 17 chr15 26172314 26172372 -75208149 + MER5A DNA MER1_type 128 186 -3 316 68 0 0 chr15 26173032 26173082 -75207439 + MLT2A2 LTR ERVL 1 43 -410 537 82 0 14 chr15 26173199 26173272 -75207249 - AluSq/x SINE Alu -167 145 74 251 175 48 32 chr15 26174088 26174151 -75206370 + C-rich Low_complexity Low_complexity 2 65 0 378 206 7 174 chr15 26174241 26174340 -75206181 + MIR SINE MIR 22 87 -175 186 43 0 0 chr15 26174340 26174363 -75206158 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 378 206 7 174 chr15 26174363 26174418 -75206103 + MIR SINE MIR 87 150 -112 279 0 0 0 chr15 26174811 26174842 -75205679 + (T)n Simple_repeat Simple_repeat 1 31 0 214 197 0 30 chr15 26176440 26176506 -75204015 + G-rich Low_complexity Low_complexity 5 68 0 239 79 26 0 chr15 26177569 26177607 -75202914 + (GA)n Simple_repeat Simple_repeat 2 40 0 238 212 150 53 chr15 26178502 26178615 -75201906 + MIR3 SINE MIR 1 124 -84 464 271 17 0 chr15 26178840 26178958 -75201563 + MIR3 SINE MIR 74 193 -15 300 295 216 48 chr15 26179241 26179468 -75201053 - L3b LINE CR1 -28 1555 1291 424 253 84 45 chr15 26179508 26179662 -75200859 + MIR3 SINE MIR 37 196 -12 559 287 85 49 chr15 26179793 26180040 -75200481 + MIR SINE MIR 3 258 -4 210 37 0 0 chr15 26180164 26180191 -75200330 + (TC)n Simple_repeat Simple_repeat 2 28 0 454 272 44 7 chr15 26180501 26180637 -75199884 + MIR3 SINE MIR 61 201 -7 512 273 15 8 chr15 26180793 26180925 -75199596 + MIR SINE MIR 16 148 -114 520 283 31 13 chr15 26181412 26181571 -75198950 - MIR3 SINE MIR -27 181 20 277 365 10 0 chr15 26181594 26181690 -75198831 + L3b LINE CR1 1290 1386 -197 330 281 144 27 chr15 26181700 26181846 -75198675 - MIR3 SINE MIR -42 166 4 210 313 0 0 chr15 26182292 26182359 -75198162 + L3b LINE CR1 1326 1392 -191 4335 31 2 4 chr15 26182743 26183262 -75197259 + L1PA4 LINE L1 5638 6155 0 223 333 26 0 chr15 26183613 26183691 -75196830 + L3b LINE CR1 1319 1398 -185 1120 151 0 6 chr15 26184325 26184491 -75196030 - AluJb SINE Alu -24 288 124 180 0 0 0 chr15 26184503 26184523 -75195998 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 935 127 0 8 chr15 26184527 26184661 -75195860 - AluJb SINE Alu -179 133 1 803 260 49 29 chr15 26184721 26184967 -75195554 + MIR SINE MIR 2 252 -10 181 311 53 73 chr15 26185053 26185204 -75195317 + MIR3 SINE MIR 1 148 -60 183 149 255 0 chr15 26186119 26186166 -75194355 - MIR SINE MIR -64 144 86 265 307 118 26 chr15 26186472 26186625 -75193896 + MIR SINE MIR 18 184 -78 3029 171 11 4 chr15 26186633 26187181 -75193340 - L1MB7 LINE L1 0 6184 5633 2428 90 3 0 chr15 26187194 26187494 -75193027 - AluSp SINE Alu -12 301 1 685 240 47 42 chr15 26187526 26187718 -75192803 - MIR SINE MIR -34 228 36 199 284 95 0 chr15 26187746 26187820 -75192701 + MIR SINE MIR 176 256 -6 373 274 83 19 chr15 26187986 26188143 -75192378 + MIR3 SINE MIR 42 208 0 453 343 71 10 chr15 26188804 26189020 -75191501 - MIR SINE MIR -20 242 16 613 352 9 13 chr15 26189874 26190104 -75190417 - L3 LINE CR1 -3 1574 1346 277 241 103 43 chr15 26190694 26190810 -75189711 + MIR SINE MIR 20 143 -65 908 175 0 2 chr15 26192054 26192237 -75188284 - AluJo SINE Alu -95 217 3 190 277 92 15 chr15 26192270 26192335 -75188186 + MIR3 SINE MIR 93 162 -46 650 235 56 17 chr15 26192820 26192999 -75187522 - MIR SINE MIR -54 208 23 249 184 224 20 chr15 26193599 26193697 -75186824 + MIR SINE MIR 113 230 -32 235 247 185 0 chr15 26193961 26194042 -75186479 + L2 LINE L2 3139 3234 -38 362 306 125 18 chr15 26194859 26195078 -75185443 - MIR SINE MIR -6 256 6 1603 89 171 4 chr15 26195156 26195413 -75185108 + AluJo SINE Alu 1 300 -2 280 299 65 60 chr15 26197252 26197453 -75183068 + MIR3 SINE MIR 2 203 -5 1759 167 0 3 chr15 26198678 26198978 -75181543 + AluJo SINE Alu 1 299 -13 363 250 85 80 chr15 26200250 26200438 -75180083 + MIR SINE MIR 31 219 -43 379 262 27 86 chr15 26200601 26200788 -75179733 + MER5A DNA MER1_type 7 182 -7 348 243 97 10 chr15 26201228 26201331 -75179190 + MIR3 SINE MIR 11 122 -86 317 43 21 0 chr15 26201854 26201901 -75178620 + (CA)n Simple_repeat Simple_repeat 2 49 0 1555 117 12 4 chr15 26202144 26202391 -75178130 + AluSx SINE Alu 52 300 -12 2322 128 113 18 chr15 26202688 26203079 -75177442 - MSTA LTR MaLR 0 428 1 292 291 196 24 chr15 26203088 26203384 -75177137 - L2 LINE L2 -348 2966 2620 497 135 11 0 chr15 26203754 26203843 -75176678 + (TG)n Simple_repeat Simple_repeat 1 90 0 234 293 73 49 chr15 26204315 26204438 -75176083 - L2 LINE L2 -2141 1173 1048 477 283 280 7 chr15 26204518 26204946 -75175575 - L2 LINE L2 -340 2974 2430 569 320 51 22 chr15 26205287 26205704 -75174817 + L2 LINE L2 2654 3083 -189 372 43 0 0 chr15 26205831 26205877 -75174644 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 342 310 158 19 chr15 26206336 26206559 -75173962 - MIR SINE MIR -6 256 4 3847 164 60 172 chr15 26206676 26206918 -75173603 + L1MB7 LINE L1 3988 4255 -1923 204 40 0 0 chr15 26206918 26206943 -75173578 + (CA)n Simple_repeat Simple_repeat 2 26 0 3847 164 60 172 chr15 26206943 26206966 -75173555 + L1MB7 LINE L1 4255 4279 -1899 2121 131 0 0 chr15 26206966 26207278 -75173243 + AluSx SINE Alu 1 312 0 3847 164 60 172 chr15 26207278 26207672 -75172849 + L1MB7 LINE L1 4279 4716 -1462 1853 148 7 0 chr15 26207672 26207976 -75172545 + AluJb SINE Alu 1 306 -6 3847 164 60 172 chr15 26207976 26208306 -75172215 + L1MB7 LINE L1 4716 5081 -1097 1078 188 5 0 chr15 26208306 26208498 -75172023 + AluJb SINE Alu 96 288 -24 3847 164 60 172 chr15 26208498 26208705 -75171816 + L1MB7 LINE L1 5081 5154 -1024 2119 114 0 10 chr15 26208705 26209011 -75171510 + AluSq SINE Alu 1 303 -10 3847 164 60 172 chr15 26209011 26209323 -75171198 + L1MB7 LINE L1 5154 5499 -679 * 5965 36 0 0 chr15 26209320 26210020 -75170501 - L1PA4 LINE L1 -1441 4705 4006 7601 33 3 1 chr15 26210020 26211472 -75169049 + L1PA4 LINE L1 4702 6155 0 3190 132 61 78 chr15 26211474 26211778 -75168743 + L1MB7 LINE L1 5494 5802 -382 1761 155 7 0 chr15 26211778 26212074 -75168447 + AluJo SINE Alu 1 298 -14 3190 132 61 78 chr15 26212074 26212472 -75168049 + L1MB7 LINE L1 5802 6184 0 188 219 49 0 chr15 26213081 26213122 -75167399 - L2 LINE L2 -6 3307 3265 403 243 29 10 chr15 26213298 26213416 -75167105 + L1ME LINE L1 5714 5823 -304 749 284 60 0 chr15 26214013 26214228 -75166293 + MIR SINE MIR 5 232 -30 330 183 11 53 chr15 26214240 26214333 -75166188 - FRAM SINE Alu -68 98 41 246 189 0 0 chr15 26214359 26214396 -75166125 - Alu SINE Alu -12 121 85 1477 175 3 21 chr15 26215597 26215882 -75164639 + AluJo SINE Alu 10 289 -23 303 251 34 19 chr15 26215928 26216035 -75164486 + MIR3 SINE MIR 59 170 -38 294 29 0 0 chr15 26218044 26218079 -75162442 + (CA)n Simple_repeat Simple_repeat 1 35 0 24 32 0 0 chr15 26220223 26220254 -75160267 + AT_rich Low_complexity Low_complexity 1 31 0 846 97 24 16 chr15 26221143 26221267 -75159254 - AluY SINE Alu -186 125 1 1901 181 109 5 chr15 26221703 26222124 -75158397 + MLT1C LTR MaLR 3 467 0 397 159 0 29 chr15 26223151 26223220 -75157301 + MLT1A1 LTR MaLR 1 67 -298 1014 189 0 0 chr15 26223224 26223393 -75157128 + MLT1A1 LTR MaLR 197 365 0 198 167 0 0 chr15 26223844 26223880 -75156641 + CT-rich Low_complexity Low_complexity 1 36 0 2292 107 0 0 chr15 26223881 26224191 -75156330 - AluSg SINE Alu 0 310 1 257 95 0 71 chr15 26224931 26224973 -75155548 - LTR57 LTR ERVL -75 336 298 620 251 84 15 chr15 26225055 26225258 -75155263 + L2 LINE L2 2949 3165 -148 229 309 32 41 chr15 26225308 26225431 -75155090 - L2 LINE L2 -10 3303 3182 3983 172 23 32 chr15 26225727 26226333 -75154188 + LTR39 LTR ERV1 1 600 -183 2081 128 3 0 chr15 26226333 26226639 -75153882 - AluSx SINE Alu -5 307 1 3983 172 23 32 chr15 26226639 26226822 -75153699 + LTR39 LTR ERV1 600 783 0 397 213 71 8 chr15 26227050 26227178 -75153343 - L1ME3A LINE L1 -241 5925 5791 516 283 126 12 chr15 26227180 26227427 -75153094 - L1ME3A LINE L1 -404 5758 5484 347 308 145 6 chr15 26227465 26227637 -75152884 - L1ME3A LINE L1 -2190 3956 3761 475 250 37 82 chr15 26227637 26228039 -75152482 - L1MC4 LINE L1 -412 7630 7224 892 184 58 34 chr15 26228221 26228428 -75152093 - AluJo SINE Alu -19 293 82 185 148 0 0 chr15 26228460 26228487 -75152034 - MIR SINE MIR -14 248 222 448 198 22 11 chr15 26228489 26228580 -75151941 - AluJo SINE Alu -219 93 2 2028 113 7 0 chr15 26228758 26229049 -75151472 + AluSq SINE Alu 1 293 -20 428 262 35 95 chr15 26229051 26229509 -75151012 + L1MC5 LINE L1 6555 7072 -821 * 729 263 24 12 chr15 26229503 26229784 -75150737 + L1MC4a LINE L1 6968 7214 -636 581 218 144 108 chr15 26229933 26230580 -75149941 + L1MC5 LINE L1 7260 7929 -32 6804 206 67 5 chr15 26230749 26232294 -75148227 + L1 LINE L1 3592 5232 -914 356 296 82 15 chr15 26232844 26232979 -75147542 + L1MB4 LINE L1 3638 3781 -2365 364 288 68 25 chr15 26233047 26233210 -75147311 + MLT1J LTR MaLR 342 511 0 291 299 92 24 chr15 26233210 26233417 -75147104 + L1MB4 LINE L1 3861 4081 -2065 387 215 161 44 chr15 26233671 26233945 -75146576 + L1MB4 LINE L1 4524 4829 -1317 251 260 27 0 chr15 26233989 26234062 -75146459 + MLT1L LTR MaLR 3 77 -538 438 172 0 33 chr15 26234613 26234735 -75145786 + GA-rich Low_complexity Low_complexity 1 118 0 2013 109 10 0 chr15 26235019 26235312 -75145209 + AluSx SINE Alu 1 296 -16 1004 157 79 28 chr15 26235489 26235945 -75144576 + L1MB4 LINE L1 5190 5863 -317 3313 138 0 6 chr15 26235945 26236445 -75144076 + LOR1a LTR ERV1 1 497 0 1122 183 38 8 chr15 26236445 26236685 -75143836 + L1MB4 LINE L1 5922 6168 -12 246 260 53 91 chr15 26236785 26237050 -75143471 + L1ME LINE L1 5485 5739 -382 6537 164 38 4 chr15 26237229 26239482 -75141039 + L1PBa LINE L1 1680 4009 -2853 22 0 0 0 chr15 26239639 26239661 -75140860 + AT_rich Low_complexity Low_complexity 1 22 0 464 261 73 42 chr15 26240623 26240788 -75139733 - L2 LINE L2 0 3313 3144 807 156 32 219 chr15 26241255 26241401 -75139120 + L1MD3 LINE L1 7564 7609 -386 2048 126 0 0 chr15 26241401 26241702 -75138819 + AluSg SINE Alu 1 301 -9 807 156 32 219 chr15 26241702 26241902 -75138619 + L1MD3 LINE L1 7609 7845 -150 366 236 22 0 chr15 26241932 26242021 -75138500 - U8 snRNA snRNA -8 128 38 893 182 40 45 chr15 26243598 26243774 -75136747 - MER20 DNA MER1_type 0 219 45 2512 64 0 3 chr15 26244507 26244819 -75135702 - AluY SINE Alu 0 311 1 367 283 91 43 chr15 26244858 26245045 -75135476 + MIR SINE MIR 36 231 -31 582 240 93 97 chr15 26245508 26245704 -75134817 - MIR SINE MIR -5 257 61 2302 51 3 37 chr15 26245704 26245999 -75134522 + AluY SINE Alu 5 289 -22 582 240 93 97 chr15 26245999 26246060 -75134461 - MIR SINE MIR -201 61 1 186 343 90 0 chr15 26246905 26246972 -75133549 + L2 LINE L2 3208 3280 -33 1025 179 66 0 chr15 26247236 26247448 -75133073 + AluJb SINE Alu 1 226 -86 336 214 0 14 chr15 26248049 26248119 -75132402 - MER8 DNA MER2_type -170 69 1 299 247 137 71 chr15 26248559 26248784 -75131737 - MIR SINE MIR -28 234 3 884 143 0 15 chr15 26249102 26249235 -75131286 + FLAM_C SINE Alu 2 132 -1 23 33 0 0 chr15 26249302 26249332 -75131189 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr15 26249452 26249476 -75131045 + AT_rich Low_complexity Low_complexity 1 24 0 38 22 0 0 chr15 26249536 26249581 -75130940 + AT_rich Low_complexity Low_complexity 1 45 0 2134 97 4 0 chr15 26250210 26250510 -75130011 - AluSq SINE Alu 0 303 3 841 68 25 17 chr15 26250524 26250642 -75129879 - AluY SINE Alu -15 296 178 1273 252 83 50 chr15 26252638 26253218 -75127303 + L1ME1 LINE L1 823 1421 -4988 4215 241 66 22 chr15 26253331 26253647 -75126874 + L1ME1 LINE L1 4180 4481 -1945 234 0 0 0 chr15 26253647 26253673 -75126848 + (CA)n Simple_repeat Simple_repeat 2 27 0 4215 241 66 22 chr15 26253673 26255019 -75125502 + L1ME1 LINE L1 4481 5952 -474 2163 102 13 29 chr15 26255019 26255334 -75125187 + AluSg SINE Alu 1 310 0 4215 241 66 22 chr15 26255334 26255811 -75124710 + L1ME1 LINE L1 5952 6407 -19 351 347 67 22 chr15 26255942 26256169 -75124352 - MIR SINE MIR -14 248 4 380 164 14 14 chr15 26258221 26258294 -75122227 + Tigger5 DNA MER2_type 2251 2323 0 378 195 49 0 chr15 26258344 26258426 -75122095 + Tigger5 DNA MER2_type 2238 2323 0 323 302 30 86 chr15 26259070 26259433 -75121088 + L1 LINE L1 3370 3693 -2453 1879 136 4 0 chr15 26259433 26259706 -75120815 + L1PA15 LINE L1 5892 6165 0 323 302 30 86 chr15 26259706 26259899 -75120622 + L1 LINE L1 3693 3895 -2251 4146 100 35 7 chr15 26259971 26260453 -75120068 + L1P4 LINE L1 4721 5188 -980 2630 45 0 13 chr15 26260453 26260762 -75119759 - AluY SINE Alu -6 305 1 4146 100 35 7 chr15 26260762 26261317 -75119204 + L1P4 LINE L1 5188 5781 -387 3835 230 82 8 chr15 26261327 26262726 -75117795 + L1PBa LINE L1 36 1682 -5181 666 189 8 16 chr15 26262851 26262973 -75117548 - FLAM_C SINE Alu -12 121 1 2138 129 0 13 chr15 26263029 26263339 -75117182 + AluSx SINE Alu 1 306 -6 237 333 0 24 chr15 26263563 26263647 -75116874 + L3b LINE CR1 1272 1353 -230 200 317 24 81 chr15 26263728 26263851 -75116670 - L2 LINE L2 -2 3270 3155 2014 141 3 0 chr15 26263852 26264143 -75116378 + AluSx SINE Alu 1 292 -20 284 104 0 21 chr15 26264685 26264733 -75115788 - MADE1 DNA Mariner 0 80 34 493 286 104 10 chr15 26265390 26265582 -75114939 - L2 LINE L2 0 3313 3104 460 171 13 0 chr15 26265633 26265709 -75114812 - MER33 DNA MER1_type -246 78 2 2200 99 0 3 chr15 26267919 26268233 -75112288 + AluY SINE Alu 1 313 0 1196 174 15 0 chr15 26268488 26268683 -75111838 - AluJo SINE Alu -111 201 4 7022 215 69 12 chr15 26268925 26269835 -75110686 - L1MD1 LINE L1 -336 5906 5049 216 0 0 0 chr15 26269835 26269859 -75110662 + (TTTC)n Simple_repeat Simple_repeat 3 26 0 7022 215 69 12 chr15 26269859 26271515 -75109006 - L1MD1 LINE L1 -1193 5049 3196 2553 211 42 24 chr15 26271505 26272132 -75108389 - L1MC4a LINE L1 -12 7796 7159 * 222 258 0 0 chr15 26272310 26272372 -75108149 + GA-rich Low_complexity Low_complexity 1 62 0 2621 53 0 0 chr15 26273515 26273818 -75106703 + AluY SINE Alu 1 303 -8 673 216 40 0 chr15 26274328 26274476 -75106045 - MER5A DNA MER1_type -35 154 1 22 0 0 0 chr15 26274737 26274759 -75105762 + AT_rich Low_complexity Low_complexity 1 22 0 231 303 91 24 chr15 26275108 26275273 -75105248 + MIR SINE MIR 76 251 -11 1691 164 34 17 chr15 26277570 26277863 -75102658 - L1PB3 LINE L1 -2 6152 5855 2155 138 0 0 chr15 26278566 26278871 -75101650 + AluSx SINE Alu 5 309 -3 373 293 123 98 chr15 26278871 26279212 -75101309 + L1MEd LINE L1 64 422 -5697 2083 137 0 3 chr15 26279212 26279518 -75101003 - AluSg1 SINE Alu -4 305 1 373 293 123 98 chr15 26279518 26279664 -75100857 + L1MEd LINE L1 422 563 -5556 311 275 225 14 chr15 26279676 26279814 -75100707 + L1ME LINE L1 138 304 -5901 2338 212 95 95 chr15 26280450 26281327 -75099194 + L1MD2 LINE L1 5049 5915 -327 2210 128 77 8 chr15 26281327 26281678 -75098843 - THE1C LTR MaLR 0 375 1 2338 212 95 95 chr15 26281678 26281999 -75098522 + L1MD2 LINE L1 5915 6234 -8 1376 259 67 117 chr15 26281997 26282914 -75097607 + L1ME LINE L1 1062 2023 -4373 * 1841 148 16 16 chr15 26282914 26283219 -75097302 - AluSx SINE Alu -3 309 5 1376 259 67 117 chr15 26283219 26283418 -75097103 + L1ME LINE L1 2023 2104 -4292 624 98 87 0 chr15 26283418 26283510 -75097011 + HY3 scRNA scRNA 1 100 -1 1376 259 67 117 chr15 26283510 26283723 -75096798 + L1ME LINE L1 2104 2326 -4070 1851 115 29 48 chr15 26283727 26283863 -75096658 + AluSx SINE Alu 6 143 -169 2161 99 6 10 chr15 26283863 26284175 -75096346 + AluY SINE Alu 1 311 0 1851 115 29 48 chr15 26284175 26284350 -75096171 + AluSx SINE Alu 143 311 -1 1120 117 47 12 chr15 26284355 26284526 -75095995 + AluSg/x SINE Alu 129 305 -7 1678 263 93 21 chr15 26284529 26285290 -75095231 + L1ME LINE L1 2284 3099 -3116 1418 180 11 27 chr15 26285359 26285620 -75094901 + AluSx SINE Alu 3 259 -53 213 263 40 0 chr15 26285798 26285874 -75094647 + MIR SINE MIR 158 236 -26 434 263 249 37 chr15 26286024 26286321 -75094200 + L2 LINE L2 2912 3271 -1 5401 172 7 0 chr15 26286726 26287680 -75092841 + L1P LINE L1 4336 5296 -850 2409 73 0 3 chr15 26288415 26288716 -75091805 - AluY SINE Alu -11 300 1 1262 195 43 14 chr15 26289092 26289630 -75090891 + LTR1B LTR ERV1 233 826 0 180 111 0 0 chr15 26289671 26289698 -75090823 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 261 108 0 0 chr15 26289703 26289740 -75090781 + MLT2B2 LTR ERVL 479 515 0 873 229 10 5 chr15 26289740 26289945 -75090576 + HERVL-B2 LTR ERVL 1 206 -5448 1531 187 63 3 chr15 26290015 26290299 -75090222 + HERVL-B2 LTR ERVL 380 680 -5084 1463 127 17 68 chr15 26290301 26290593 -75089928 - LTR23 LTR ERV1 0 437 161 589 200 82 0 chr15 26290671 26290806 -75089715 - LTR23 LTR ERV1 -291 146 1 1194 167 14 5 chr15 26290831 26291052 -75089469 + HERVL-B2 LTR ERVL 679 901 -4863 1973 254 43 42 chr15 26291190 26291401 -75089120 - L1M4 LINE L1 -2465 3681 3472 2413 79 0 3 chr15 26291401 26291705 -75088816 + AluY SINE Alu 1 303 -8 1973 254 43 42 chr15 26291705 26292299 -75088222 - L1M4 LINE L1 -2674 3472 2875 1813 253 33 33 chr15 26292289 26292895 -75087626 - L1MCb LINE L1 -4882 1163 558 * 448 274 111 66 chr15 26292978 26293204 -75087317 - L1MCb LINE L1 -5481 564 329 378 269 39 70 chr15 26293218 26293374 -75087147 - L1MCb LINE L1 -5789 256 106 * 932 268 48 70 chr15 26293365 26293960 -75086561 - MER21B LTR ERV1 -137 726 142 1552 127 5 0 chr15 26294395 26294608 -75085913 + AluSg/x SINE Alu 68 281 -29 3759 74 6 4 chr15 26294609 26295098 -75085423 + LTR2B LTR ERV1 1 490 0 432 37 0 0 chr15 26295099 26295153 -75085368 + (CATAA)n Simple_repeat Simple_repeat 1 54 0 1627 216 35 0 chr15 26295154 26295496 -75085025 - ERVL LTR ERVL -4360 1404 1051 569 86 250 23 chr15 26295516 26295644 -75084877 - MER4C LTR ERV1 -18 447 291 245 32 0 210 chr15 26295703 26295765 -75084756 - MER4A LTR ERV1 -310 354 306 1405 153 63 39 chr15 26295773 26296107 -75084414 - MER4A LTR ERV1 -322 342 1 487 181 211 0 chr15 26296107 26296240 -75084281 - ERVL LTR ERVL -4711 1053 893 888 55 55 0 chr15 26296243 26296371 -75084150 + MER30 DNA MER1_type 4 138 -92 2254 81 7 0 chr15 26296371 26296655 -75083866 - AluY SINE Alu -17 294 9 979 158 0 19 chr15 26298470 26298651 -75081870 - FRAM SINE Alu 0 176 1 192 120 20 60 chr15 26298660 26298710 -75081811 - MIR SINE MIR -108 154 107 1347 137 5 0 chr15 26298757 26298962 -75081559 + L1MC1 LINE L1 6122 6327 -6 186 43 0 0 chr15 26299431 26299454 -75081067 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1777 151 4 0 chr15 26299459 26299737 -75080784 - AluSx SINE Alu -33 279 1 240 221 122 28 chr15 26299792 26299924 -75080597 - MIR SINE MIR -59 203 53 567 255 82 10 chr15 26301088 26301296 -75079225 - L1ME3 LINE L1 -201 5961 5739 254 238 62 0 chr15 26301304 26301384 -75079137 - L1ME3 LINE L1 -536 5634 5550 2550 68 0 0 chr15 26301533 26301843 -75078678 + AluY SINE Alu 1 310 -1 307 228 43 0 chr15 26302158 26302250 -75078271 + L1M4 LINE L1 3863 3958 -2188 579 196 43 0 chr15 26302257 26302395 -75078126 + L1MC1 LINE L1 6128 6271 -62 500 149 33 66 chr15 26302395 26302502 -75078019 + L1MC1 LINE L1 6206 6322 -11 2051 124 0 7 chr15 26302508 26302821 -75077700 + AluSc SINE Alu 1 311 0 2296 78 0 13 chr15 26302847 26303154 -75077367 + AluY SINE Alu 1 303 -8 2410 55 0 19 chr15 26304087 26304397 -75076124 + AluY SINE Alu 1 304 -7 2371 67 3 3 chr15 26305035 26305332 -75075189 - AluY SINE Alu -14 297 1 1622 172 62 14 chr15 26305997 26306287 -75074234 - AluJo SINE Alu -7 305 2 330 298 143 53 chr15 26306303 26306568 -75073953 - L1M4 LINE L1 -1984 4162 3874 1720 156 4 7 chr15 26307080 26307349 -75073172 - AluJo SINE Alu -43 269 2 21 0 0 0 chr15 26307358 26307379 -75073142 + AT_rich Low_complexity Low_complexity 1 21 0 1815 180 3 7 chr15 26307797 26308103 -75072418 - AluJo SINE Alu -7 305 1 2161 119 10 0 chr15 26308160 26308454 -75072067 + AluSx SINE Alu 5 301 -11 574 296 66 22 chr15 26310565 26310647 -75069874 - L1MEd LINE L1 -840 1650 1573 2617 121 45 17 chr15 26310647 26311069 -75069452 - MER57B LTR ERV1 0 434 1 574 296 66 22 chr15 26311069 26311607 -75068914 - L1MEd LINE L1 -917 1573 913 22 0 0 0 chr15 26311616 26311638 -75068883 + AT_rich Low_complexity Low_complexity 1 22 0 2271 65 45 3 chr15 26311697 26311988 -75068533 - AluY SINE Alu -8 303 1 3185 232 112 30 chr15 26312150 26313763 -75066758 + L1MDb LINE L1 6 1740 -4666 256 105 175 0 chr15 26313857 26313914 -75066607 + MLT2B2 LTR ERVL 49 115 -405 1696 213 28 14 chr15 26313981 26314338 -75066183 + MLT2B2 LTR ERVL 100 461 -54 631 99 10 0 chr15 26314393 26314494 -75066027 + LTR1B LTR ERV1 1 102 -724 2048 100 0 31 chr15 26314600 26314890 -75065631 + AluY SINE Alu 18 298 -13 775 221 110 28 chr15 26315920 26316237 -75064284 - LTR37A LTR ERV1 0 426 84 185 81 0 54 chr15 26316576 26316613 -75063908 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 2216 86 0 0 chr15 26317884 26318204 -75062317 + AluSg SINE Alu 2 321 0 663 246 40 6 chr15 26318435 26318610 -75061911 - MIR SINE MIR -31 231 51 2359 54 0 0 chr15 26318744 26319023 -75061498 + AluY SINE Alu 1 279 -32 233 29 29 0 chr15 26319023 26319057 -75061464 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 2062 138 0 0 chr15 26319818 26320116 -75060405 + AluSx SINE Alu 3 300 -12 253 216 0 20 chr15 26320116 26320167 -75060354 + L2 LINE L2 3264 3313 0 29 47 0 0 chr15 26320206 26320249 -75060272 + AT_rich Low_complexity Low_complexity 1 43 0 245 173 77 0 chr15 26320649 26320701 -75059820 - L1ME4a LINE L1 -72 6049 5994 454 294 18 12 chr15 26320711 26320874 -75059647 + (CATATA)n Simple_repeat Simple_repeat 3 166 0 2204 109 3 10 chr15 26320934 26321245 -75059276 + AluSx SINE Alu 1 309 -3 425 199 352 0 chr15 26321245 26321461 -75059060 - L1ME4a LINE L1 -303 5818 5527 827 277 139 16 chr15 26321802 26322737 -75057784 + L1ME LINE L1 4487 5543 -745 2364 96 0 3 chr15 26322742 26323044 -75057477 - AluSx SINE Alu -11 301 1 384 272 217 11 chr15 26323178 26323358 -75057163 + L1ME LINE L1 5602 5818 -303 583 103 0 0 chr15 26323415 26323502 -75057019 + L1MA3 LINE L1 6219 6305 0 24 0 0 0 chr15 26323543 26323567 -75056954 + AT_rich Low_complexity Low_complexity 1 24 0 2169 85 0 85 chr15 26323623 26323952 -75056569 - AluSx SINE Alu -11 301 1 1487 182 26 77 chr15 26324569 26324960 -75055561 + MLT1A2 LTR MaLR 4 374 0 2351 94 0 0 chr15 26325316 26325613 -75054908 + AluSg1 SINE Alu 1 297 -12 696 110 9 0 chr15 26325755 26325864 -75054657 + MLT1B LTR MaLR 63 172 -218 2290 90 0 7 chr15 26325869 26326169 -75054352 + AluY SINE Alu 1 298 -13 238 208 130 0 chr15 26326191 26326268 -75054253 + L1 LINE L1 4750 4836 -1310 592 293 27 40 chr15 26326745 26327073 -75053448 - L1MC4 LINE L1 0 8042 7719 667 218 77 0 chr15 26327289 26327459 -75053062 - MER5A DNA MER1_type -2 187 5 1815 112 8 4 chr15 26327639 26327889 -75052632 + AluSx SINE Alu 1 251 -61 461 31 0 16 chr15 26327904 26327968 -75052553 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 611 223 97 24 chr15 26328276 26328482 -75052039 + MLT1J LTR MaLR 291 511 0 236 246 80 7 chr15 26329227 26329365 -75051156 - L1P5 LINE L1 -711 5443 5296 1531 137 17 0 chr15 26329418 26329834 -75050687 + AluSp SINE Alu 76 495 0 259 346 185 0 chr15 26330191 26330321 -75050200 + MIR3 SINE MIR 53 206 -2 182 378 92 0 chr15 26330657 26330776 -75049745 + MER5B DNA MER1_type 17 146 -32 450 342 0 12 chr15 26330979 26331315 -75049206 + GA-rich Low_complexity Low_complexity 1 331 0 1275 153 54 5 chr15 26331443 26331690 -75048831 + L1PB4 LINE L1 5905 6151 0 2247 75 0 0 chr15 26331694 26332010 -75048511 + AluY SINE Alu 1 316 0 559 307 103 16 chr15 26332354 26332732 -75047789 - L1ME4a LINE L1 -2 6119 5709 284 330 79 41 chr15 26332738 26333236 -75047285 + L2 LINE L2 2766 3289 -24 189 243 108 40 chr15 26333774 26333848 -75046673 + MIR SINE MIR 184 262 0 1928 144 25 25 chr15 26333928 26334288 -75046233 + MLT1A1 LTR MaLR 6 365 0 3220 171 84 0 chr15 26334350 26335017 -75045504 + L1MB7 LINE L1 5404 6126 -58 348 161 0 0 chr15 26335018 26335080 -75045441 + (CATATA)n Simple_repeat Simple_repeat 3 64 0 361 189 0 63 chr15 26335081 26335176 -75045345 - L1MC4 LINE L1 -1339 6703 6615 2339 98 0 19 chr15 26335228 26335545 -75044976 + AluSp SINE Alu 1 311 -2 2200 112 13 13 chr15 26336036 26336340 -75044181 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr15 26336431 26336459 -75044062 + AT_rich Low_complexity Low_complexity 1 28 0 679 200 8 8 chr15 26336471 26336596 -75043925 + FLAM_C SINE Alu 3 127 -16 24 0 0 0 chr15 26336688 26336712 -75043809 + AT_rich Low_complexity Low_complexity 1 24 0 326 236 27 45 chr15 26337038 26337148 -75043373 + L1ME4a LINE L1 5743 5850 -271 2307 88 3 0 chr15 26337156 26337452 -75043069 + AluSp SINE Alu 1 297 -16 2228 103 0 0 chr15 26337625 26337926 -75042595 + AluY SINE Alu 1 301 -10 21 0 0 0 chr15 26338158 26338179 -75042342 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr15 26338481 26338520 -75042001 + AT_rich Low_complexity Low_complexity 1 39 0 506 279 139 103 chr15 26339504 26340545 -75039976 + L1M2 LINE L1 509 1405 -5444 447 90 0 15 chr15 26341406 26341473 -75039048 - Alu SINE Alu -244 66 1 408 194 21 0 chr15 26342071 26342164 -75038357 - MER103 DNA DNA -21 145 51 312 275 18 37 chr15 26342210 26342319 -75038202 + MER5C DNA MER1_type 18 124 -200 1370 130 189 53 chr15 26342781 26343025 -75037496 + MER47A DNA MER2_type 1 210 -2113 207 0 0 0 chr15 26343025 26343048 -75037473 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2105 111 3 7 chr15 26343052 26343340 -75037181 - AluSp SINE Alu -26 287 1 1370 130 189 53 chr15 26343340 26343412 -75037109 + MER47A DNA MER2_type 212 366 0 2234 73 38 0 chr15 26344212 26344501 -75036020 - AluY SINE Alu -7 304 5 369 109 0 0 chr15 26344505 26344560 -75035961 + (T)n Simple_repeat Simple_repeat 1 55 0 21 89 0 0 chr15 26345086 26345142 -75035379 + AT_rich Low_complexity Low_complexity 1 56 0 28 0 0 0 chr15 26345419 26345447 -75035074 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr15 26345704 26345749 -75034772 + AT_rich Low_complexity Low_complexity 1 45 0 198 232 143 0 chr15 26346876 26346932 -75033589 + MIR SINE MIR 106 169 -93 1307 160 12 78 chr15 26347188 26347402 -75033119 - AluJo SINE Alu -2 310 124 1746 114 28 41 chr15 26347402 26347692 -75032829 + AluSp SINE Alu 2 287 -26 1307 160 12 78 chr15 26347692 26347809 -75032712 - AluJo SINE Alu -188 124 1 1649 135 14 17 chr15 26347843 26348140 -75032381 + AluSp SINE Alu 5 300 -13 563 196 9 0 chr15 26348140 26348252 -75032269 - AluJb SINE Alu -198 114 2 1587 139 23 16 chr15 26348287 26348590 -75031931 + AluSp SINE Alu 5 309 -4 288 136 0 0 chr15 26348590 26348634 -75031887 - AluJb SINE Alu -188 114 71 * 1512 226 91 39 chr15 26348625 26349064 -75031457 + MLT1D LTR MaLR 44 505 0 1758 194 28 33 chr15 26349603 26349999 -75030522 - L1MB2 LINE L1 0 6171 5778 381 43 0 0 chr15 26349999 26350046 -75030475 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 836 168 14 0 chr15 26350046 26350189 -75030332 - AluJb SINE Alu -30 282 138 1627 156 19 16 chr15 26350672 26350980 -75029541 - L1MB7 LINE L1 0 6184 5876 26 30 0 0 chr15 26354011 26354044 -75026477 + AT_rich Low_complexity Low_complexity 1 33 0 580 204 138 13 chr15 26354087 26354239 -75026282 - MIR SINE MIR -64 198 28 1916 109 13 33 chr15 26354392 26354695 -75025826 - AluSx SINE Alu -13 299 3 327 49 0 0 chr15 26355859 26355900 -75024621 + (TG)n Simple_repeat Simple_repeat 2 42 0 275 204 0 0 chr15 26355912 26355961 -75024560 + MIR SINE MIR 184 232 -30 921 249 127 33 chr15 26355991 26356505 -75024016 - HAL1 LINE L1 -877 1630 1069 606 236 126 95 chr15 26356506 26356981 -75023540 - MLT1H1 LTR MaLR 0 555 66 582 229 151 28 chr15 26357048 26357266 -75023255 - HAL1 LINE L1 -1437 1070 826 2134 112 3 3 chr15 26357272 26357575 -75022946 - AluSp SINE Alu -10 303 1 1756 138 10 31 chr15 26357639 26357967 -75022554 + AluJo SINE Alu 1 322 0 235 290 93 65 chr15 26358241 26358531 -75021990 - HAL1 LINE L1 -2167 340 43 901 217 37 28 chr15 26358914 26359131 -75021390 + MER20 DNA MER1_type 1 219 0 2278 63 0 20 chr15 26359261 26359562 -75020959 + AluY SINE Alu 5 299 -12 465 274 195 39 chr15 26359663 26359970 -75020551 - L1M4 LINE L1 -2884 3262 2908 270 0 0 0 chr15 26360000 26360030 -75020491 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2004 118 7 0 chr15 26360030 26360309 -75020212 - AluY SINE Alu -27 284 1 396 251 99 41 chr15 26362967 26362990 -75017531 + MIR SINE MIR 12 32 -230 2106 99 7 3 chr15 26362990 26363283 -75017238 + AluY SINE Alu 1 294 -17 396 251 99 41 chr15 26363283 26363430 -75017091 + MIR SINE MIR 32 192 -70 277 343 131 0 chr15 26364360 26364497 -75016024 + MIR3 SINE MIR 31 185 -23 333 241 78 26 chr15 26364516 26364632 -75015889 + L2 LINE L2 3146 3267 -5 230 173 58 0 chr15 26365968 26366020 -75014501 + L1MC4a LINE L1 5885 5939 -1869 282 56 0 0 chr15 26366023 26366059 -75014462 + (TG)n Simple_repeat Simple_repeat 2 37 0 507 255 160 25 chr15 26366255 26366455 -75014066 + MIR SINE MIR 26 252 -10 185 250 231 0 chr15 26367046 26367098 -75013423 + MIR SINE MIR 88 151 -111 1806 145 0 26 chr15 26368537 26368840 -75011681 + AluSx SINE Alu 3 297 -15 267 287 189 0 chr15 26368857 26368979 -75011542 + MIR SINE MIR 48 192 -70 862 175 0 18 chr15 26369686 26369852 -75010669 + 7SLRNA srpRNA srpRNA 95 257 -63 261 57 0 0 chr15 26370977 26371012 -75009509 + (TGGGGG)n Simple_repeat Simple_repeat 6 40 0 782 104 9 0 chr15 26373449 26373555 -75006966 - AluSq/x SINE Alu -205 107 1 592 143 0 17 chr15 26373851 26373970 -75006551 + (TTCC)n Simple_repeat Simple_repeat 1 117 0 2101 118 0 7 chr15 26373971 26374277 -75006244 - AluSx SINE Alu -8 304 1 355 295 47 118 chr15 26374298 26374432 -75006089 - HAL1 LINE L1 -1210 1297 1155 2747 139 98 7 chr15 26374432 26374973 -75005548 - L1MB7 LINE L1 -16 6168 5579 1233 135 14 19 chr15 26374974 26375189 -75005332 - L1PA13 LINE L1 0 6163 5950 355 295 47 118 chr15 26375189 26375432 -75005089 - HAL1 LINE L1 -1351 1156 945 300 325 67 33 chr15 26375576 26375606 -75004915 - HAL1 LINE L1 -1586 921 893 2540 7 0 0 chr15 26375606 26375887 -75004634 - AluYa5 SINE Alu -9 302 22 300 325 67 33 chr15 26375887 26375976 -75004545 - HAL1 LINE L1 -1614 893 798 229 282 0 0 chr15 26376786 26376857 -75003664 + T-rich Low_complexity Low_complexity 1 71 0 837 154 6 82 chr15 26376908 26377090 -75003431 - AluJo SINE Alu -144 168 1 2252 94 0 3 chr15 26377133 26377440 -75003081 - AluSx SINE Alu -4 308 3 354 300 87 33 chr15 26378254 26378404 -75002117 - L2 LINE L2 0 3313 3156 331 321 89 30 chr15 26378479 26378647 -75001874 - MIR SINE MIR 0 262 85 430 270 57 0 chr15 26378680 26378696 -75001825 - MER3 DNA MER1_type 6 168 154 1664 170 49 0 chr15 26378696 26378984 -75001537 + AluJb SINE Alu 1 302 -10 430 270 57 0 chr15 26378984 26379126 -75001395 - MER3 DNA MER1_type -8 154 1 1161 159 15 0 chr15 26379530 26379725 -75000796 + AluJo SINE Alu 4 201 -111 305 326 126 23 chr15 26382000 26382175 -74998346 + L1MEd LINE L1 908 1100 -5019 450 189 14 0 chr15 26382189 26382263 -74998258 + MER33 DNA MER1_type 4 78 -246 539 285 104 10 chr15 26382312 26382505 -74998016 + L2 LINE L2 3103 3313 0 235 149 0 21 chr15 26383150 26383197 -74997324 + MADE1 DNA Mariner 34 79 -1 238 288 16 114 chr15 26383691 26383705 -74996816 + L2 LINE L2 2896 2910 -362 1860 130 0 18 chr15 26383705 26384025 -74996496 - AluSx SINE Alu 0 320 6 238 288 16 114 chr15 26384025 26384193 -74996328 + L2 LINE L2 2910 3061 -211 1233 179 0 17 chr15 26384565 26384799 -74995722 + AluSg/x SINE Alu 83 312 0 273 149 23 11 chr15 26385197 26385284 -74995237 + (TG)n Simple_repeat Simple_repeat 1 88 0 2328 74 0 3 chr15 26385653 26385964 -74994557 + AluY SINE Alu 1 310 -1 2460 52 0 13 chr15 26386396 26386703 -74993818 + AluY SINE Alu 1 303 -8 528 267 172 49 chr15 26386742 26387104 -74993417 - L1 LINE L1 -2834 3312 2922 1943 122 10 0 chr15 26387139 26387460 -74993061 - AluY SINE Alu 0 311 1 386 257 99 41 chr15 26390123 26390146 -74990375 + MIR SINE MIR 12 32 -230 2227 94 7 0 chr15 26390146 26390444 -74990077 + AluY SINE Alu 1 300 -11 386 257 99 41 chr15 26390444 26390591 -74989930 + MIR SINE MIR 32 192 -70 286 336 131 0 chr15 26391522 26391659 -74988862 + MIR3 SINE MIR 31 185 -23 339 278 70 17 chr15 26391679 26391794 -74988727 + L2 LINE L2 3188 3308 -5 230 149 40 81 chr15 26393138 26393191 -74987330 + L1MC4a LINE L1 5885 5936 -1872 384 22 0 0 chr15 26393191 26393236 -74987285 + (TG)n Simple_repeat Simple_repeat 1 45 0 230 149 40 81 chr15 26393236 26393256 -74987265 + L1MC4a LINE L1 5936 5955 -1853 507 255 160 25 chr15 26393432 26393632 -74986889 + MIR SINE MIR 26 252 -10 184 250 231 0 chr15 26394223 26394275 -74986246 + MIR SINE MIR 88 151 -111 1815 140 0 39 chr15 26395710 26396018 -74984503 + AluSx SINE Alu 2 297 -15 267 287 189 0 chr15 26396035 26396157 -74984364 + MIR SINE MIR 48 192 -70 911 163 0 18 chr15 26396842 26397008 -74983513 + 7SLRNA srpRNA srpRNA 95 257 -63 207 69 0 0 chr15 26398130 26398159 -74982362 + (TGGGGG)n Simple_repeat Simple_repeat 6 34 0 22 35 0 0 chr15 26401495 26401524 -74978997 + AT_rich Low_complexity Low_complexity 1 29 0 258 54 54 0 chr15 26402193 26402230 -74978291 - MER5A DNA MER1_type -77 112 74 2187 60 3 13 chr15 26402234 26402533 -74977988 - AluY SINE Alu -15 296 1 302 196 0 0 chr15 26402548 26402594 -74977927 + Tigger3(Golem) DNA MER2_type 4 49 -2980 847 124 0 0 chr15 26402598 26402719 -74977802 - Tigger3(Golem) DNA MER2_type -746 2283 2163 396 198 10 79 chr15 26402716 26402817 -74977704 - Tigger3(Golem) DNA MER2_type -2869 160 67 * 2212 80 3 13 chr15 26402817 26403130 -74977391 - AluY SINE Alu -1 310 1 231 37 0 0 chr15 26403131 26403158 -74977363 - Tigger3(Golem) DNA MER2_type -2947 82 56 * 3950 126 68 26 chr15 26403156 26403219 -74977302 + Tigger3(Golem) DNA MER2_type 2276 2335 -693 1794 168 0 3 chr15 26403219 26403522 -74976999 - AluJb SINE Alu -10 302 1 3950 126 68 26 chr15 26403522 26403910 -74976611 + Tigger3(Golem) DNA MER2_type 2335 2771 -257 2252 101 3 0 chr15 26403910 26404217 -74976304 + AluSc SINE Alu 1 308 -1 3950 126 68 26 chr15 26404217 26404486 -74976035 + Tigger3(Golem) DNA MER2_type 2771 3027 -1 862 297 93 13 chr15 26404575 26404972 -74975549 - LTR16A LTR ERVL -6 444 16 2314 43 4 0 chr15 26405098 26405398 -74975123 + AluY SINE Alu 1 301 0 1887 113 0 0 chr15 26405854 26406111 -74974410 + AluSx SINE Alu 1 257 -55 363 197 197 16 chr15 26406568 26406695 -74973826 - L1MC4a LINE L1 -1883 5925 5776 * 1406 253 63 15 chr15 26406692 26406749 -74973772 + L1MC/D LINE L1 5377 5430 -2378 2041 122 0 0 chr15 26406749 26407045 -74973476 + AluSx SINE Alu 1 296 -16 1406 253 63 15 chr15 26407045 26407383 -74973138 + L1MC/D LINE L1 5430 5791 -2017 24 53 0 0 chr15 26407614 26407652 -74972869 + AT_rich Low_complexity Low_complexity 1 38 0 2246 94 0 0 chr15 26407735 26408042 -74972479 + AluSg1 SINE Alu 1 307 -2 202 263 288 12 chr15 26408548 26408628 -74971893 + L2 LINE L2 3162 3263 -9 295 283 123 47 chr15 26408763 26408869 -74971652 - L2 LINE L2 0 3313 3200 1730 133 24 7 chr15 26410047 26410341 -74970180 + AluJb SINE Alu 7 305 -7 922 268 106 19 chr15 26410737 26411152 -74969369 - L2 LINE L2 -1122 2192 1742 684 231 0 8 chr15 26411781 26411915 -74968606 + FLAM_A SINE Alu 1 133 0 204 311 171 12 chr15 26413792 26413956 -74966565 - L2 LINE L2 -527 2787 2598 1926 145 0 0 chr15 26414057 26414347 -74966174 - AluSx SINE Alu -11 301 12 352 266 22 144 chr15 26414377 26414513 -74966008 - HAL1 LINE L1 -1208 1299 1148 2763 137 98 7 chr15 26414513 26415054 -74965467 - L1MB7 LINE L1 -16 6168 5579 1233 135 14 19 chr15 26415055 26415270 -74965251 - L1PA13 LINE L1 0 6163 5950 352 266 22 144 chr15 26415270 26415450 -74965071 - HAL1 LINE L1 -1358 1149 1020 209 57 29 0 chr15 26416618 26416653 -74963868 + (TTA)n Simple_repeat Simple_repeat 1 36 0 812 169 6 62 chr15 26416702 26416880 -74963641 - AluJb SINE Alu -144 168 1 1949 114 4 4 chr15 26416925 26417226 -74963295 - AluSx SINE Alu 0 303 3 1816 164 0 3 chr15 26417486 26417790 -74962731 - AluSx SINE Alu -9 303 1 22 88 0 0 chr15 26418509 26418566 -74961955 + AT_rich Low_complexity Low_complexity 1 57 0 378 0 0 0 chr15 26419641 26419683 -74960838 + (TG)n Simple_repeat Simple_repeat 2 43 0 188 283 38 0 chr15 26419979 26420032 -74960489 - L3 LINE CR1 -390 1187 1133 204 284 208 30 chr15 26420118 26420354 -74960167 - L3 LINE CR1 -588 989 712 25 0 0 0 chr15 26420784 26420809 -74959712 + AT_rich Low_complexity Low_complexity 1 25 0 2078 120 0 13 chr15 26421008 26421309 -74959212 - AluSq SINE Alu -16 297 1 2014 133 3 0 chr15 26421384 26421685 -74958836 - AluSx SINE Alu -10 302 1 2442 120 0 5 chr15 26421857 26422225 -74958296 + L1PB1 LINE L1 5783 6148 -3 2720 84 28 5 chr15 26422231 26422622 -74957899 + L1PA10 LINE L1 5768 6167 -1 204 40 0 0 chr15 26422624 26422649 -74957872 + (TG)n Simple_repeat Simple_repeat 2 26 0 384 328 38 29 chr15 26422657 26422971 -74957550 + L1 LINE L1 4015 4331 -1815 3216 230 80 45 chr15 26423101 26424421 -74956100 + L1MC5 LINE L1 6551 7927 -34 310 322 138 20 chr15 26425851 26426003 -74954518 - MIR SINE MIR -71 191 22 848 236 14 10 chr15 26426256 26426464 -74954057 - MER96B DNA MER1_type? -208 209 1 266 0 0 29 chr15 26426787 26426822 -74953699 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1729 120 3 57 chr15 26426835 26427134 -74953387 - AluSq SINE Alu -30 283 1 588 256 172 0 chr15 26427625 26427828 -74952693 - MIR SINE MIR -4 258 21 2151 85 10 23 chr15 26428215 26428522 -74951999 + AluY SINE Alu 1 303 -8 979 248 18 5 chr15 26429311 26429529 -74950992 - MER58A DNA MER1_type -2 222 2 449 292 0 52 chr15 26430080 26430367 -74950154 + GA-rich Low_complexity Low_complexity 1 272 0 30 27 0 0 chr15 26431107 26431144 -74949377 + AT_rich Low_complexity Low_complexity 1 37 0 1876 97 104 0 chr15 26431155 26431424 -74949097 + AluSx SINE Alu 1 297 -15 1890 136 3 7 chr15 26432055 26432357 -74948164 - AluSx SINE Alu -11 301 1 460 167 52 0 chr15 26432379 26432475 -74948046 - L1ME2 LINE L1 -4 6160 6060 228 88 29 0 chr15 26432481 26432515 -74948006 - MER3 DNA MER1_type -160 49 15 364 304 59 59 chr15 26433707 26433911 -74946610 + MLT1L LTR MaLR 5 208 -407 304 343 22 7 chr15 26434761 26434898 -74945623 - L2 LINE L2 -926 2388 2250 407 233 52 9 chr15 26436113 26436229 -74944292 - MIR3 SINE MIR -36 172 52 352 286 164 0 chr15 26437093 26437233 -74943288 - MER5A DNA MER1_type -26 163 1 290 261 112 8 chr15 26437266 26437400 -74943121 - MIR SINE MIR -94 168 21 2040 130 0 0 chr15 26438921 26439222 -74941299 + AluSx SINE Alu 1 301 -11 1918 123 0 19 chr15 26439445 26439753 -74940768 + AluY SINE Alu 1 302 -9 509 316 66 13 chr15 26440116 26440344 -74940177 + MIR SINE MIR 13 252 -10 245 317 0 49 chr15 26440345 26440487 -74940034 + L1 LINE L1 3702 3836 -2310 709 219 26 0 chr15 26440514 26440669 -74939852 - AluJb SINE Alu -17 295 137 308 294 17 26 chr15 26440685 26440808 -74939713 + L1 LINE L1 4020 4141 -2005 1707 164 0 26 chr15 26440920 26441245 -74939276 + AluSx SINE Alu 1 312 0 2061 199 91 117 chr15 26441521 26442098 -74938423 - L1MC4a LINE L1 -946 6862 6312 1441 72 111 5 chr15 26442098 26442306 -74938215 + MER30 DNA MER1_type 1 230 0 2061 199 91 117 chr15 26442306 26442568 -74937953 - L1MC4a LINE L1 -1496 6312 6045 527 268 89 89 chr15 26442613 26442721 -74937800 - MIR SINE MIR -14 248 141 1647 117 0 0 chr15 26442721 26442952 -74937569 - AluSx SINE Alu -24 288 58 527 268 89 89 chr15 26442952 26443067 -74937454 - MIR SINE MIR -120 142 25 184 352 57 9 chr15 26443440 26443545 -74936976 - L2 LINE L2 -5 3308 3199 1832 122 7 0 chr15 26443825 26444096 -74936425 + AluSq SINE Alu 35 307 -6 256 250 31 0 chr15 26444250 26444314 -74936207 - MLT1K LTR MaLR -39 549 484 180 111 0 0 chr15 26445609 26445636 -74934885 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 375 23 0 0 chr15 26445729 26445773 -74934748 + (TG)n Simple_repeat Simple_repeat 2 45 0 448 291 37 0 chr15 26445930 26446098 -74934423 - L2 LINE L2 -1056 2258 2082 243 256 58 0 chr15 26446104 26446190 -74934331 - L2 LINE L2 -1036 2278 2188 1002 275 90 14 chr15 26446203 26446570 -74933951 - MLT1I LTR MaLR -14 395 1 654 274 74 55 chr15 26447992 26448573 -74931948 + L1MC4 LINE L1 5268 5647 -517 242 318 93 0 chr15 26450180 26450287 -74930234 - L2 LINE L2 -11 3261 3145 3374 122 48 59 chr15 26450975 26451446 -74929075 - MER7C DNA MER2_type -2426 602 138 2289 55 21 0 chr15 26451446 26451735 -74928786 + AluY SINE Alu 3 297 -14 3374 122 48 59 chr15 26451735 26451872 -74928649 - MER7C DNA MER2_type -2890 138 1 1057 279 74 51 chr15 26452220 26452830 -74927691 - L2 LINE L2 -381 2933 2310 857 184 48 0 chr15 26452904 26453051 -74927470 + FRAM SINE Alu 9 162 -14 1964 237 69 57 chr15 26453590 26454190 -74926331 + L1MC4 LINE L1 6895 7523 -285 5977 46 0 11 chr15 26454190 26454911 -74925610 + L1PA7 LINE L1 5441 6153 -1 1964 237 69 57 chr15 26454911 26455200 -74925321 + L1MC4 LINE L1 7523 7807 -1 186 143 79 16 chr15 26455837 26455963 -74924558 + (TA)n Simple_repeat Simple_repeat 1 134 0 35 24 0 0 chr15 26455970 26456012 -74924509 + AT_rich Low_complexity Low_complexity 1 42 0 29 47 0 0 chr15 26456069 26456112 -74924409 + AT_rich Low_complexity Low_complexity 1 43 0 202 298 96 11 chr15 26456639 26456817 -74923704 - L2 LINE L2 -195 3077 2885 289 250 61 76 chr15 26456909 26456986 -74923535 - L2 LINE L2 -528 2786 2710 2125 110 17 0 chr15 26456986 26457285 -74923236 - AluSx SINE Alu -8 304 1 289 250 61 76 chr15 26457285 26457339 -74923182 - L2 LINE L2 -604 2710 2657 1232 269 89 49 chr15 26457538 26458495 -74922026 - L1ME3 LINE L1 0 6166 5116 1961 166 0 0 chr15 26458495 26458797 -74921724 - AluSx SINE Alu -9 303 2 1232 269 89 49 chr15 26458797 26459070 -74921451 - L1ME3 LINE L1 -1050 5116 4855 631 271 33 11 chr15 26460477 26460658 -74919863 + L1 LINE L1 2510 2694 -3452 303 277 76 0 chr15 26461018 26461137 -74919384 - L1ME4a LINE L1 -3 6118 5991 225 146 0 0 chr15 26461425 26461466 -74919055 - LTR66 LTR ERVL -171 439 399 365 285 106 31 chr15 26462814 26463070 -74917451 - L1ME4a LINE L1 -2082 5726 5452 407 302 38 19 chr15 26464896 26465055 -74915466 + MIR3 SINE MIR 32 193 -15 256 373 35 35 chr15 26465063 26465264 -74915257 + L3 LINE CR1 457 657 -920 627 227 129 12 chr15 26465273 26465436 -74915085 - MER58A DNA MER1_type -1 223 42 204 226 19 0 chr15 26466120 26466173 -74914348 - MIR SINE MIR -76 186 133 273 250 26 0 chr15 26466232 26466308 -74914213 - MER5A DNA MER1_type -83 106 29 658 143 34 0 chr15 26466973 26467092 -74913429 - L1MD1 LINE L1 -2 6240 6118 5103 144 36 4 chr15 26467696 26469266 -74911255 - L1MA4 LINE L1 -190 6110 4487 2596 196 15 65 chr15 26469258 26469935 -74910586 - L1ME4a LINE L1 -846 5300 4658 * 21 71 0 0 chr15 26470292 26470334 -74910187 + AT_rich Low_complexity Low_complexity 1 42 0 47 44 0 0 chr15 26470725 26470793 -74909728 + AT_rich Low_complexity Low_complexity 1 68 0 779 286 102 52 chr15 26471469 26472121 -74908400 - L1MC4 LINE L1 0 8042 7245 2388 84 0 7 chr15 26472121 26472420 -74908101 - AluSc SINE Alu -12 297 1 779 286 102 52 chr15 26472420 26472544 -74907977 - L1MC4 LINE L1 -797 7245 7129 189 310 16 93 chr15 26472664 26472793 -74907728 + MIR SINE MIR 14 132 -130 410 216 69 99 chr15 26474608 26474697 -74905824 - LTR37B LTR ERV1 -59 409 319 2294 59 3 53 chr15 26474697 26475000 -74905521 - AluY SINE Alu -23 288 1 410 216 69 99 chr15 26475000 26475142 -74905379 - LTR37B LTR ERV1 -149 319 185 1627 228 97 43 chr15 26475456 26475994 -74904527 + MLT1F1 LTR MaLR 1 567 0 263 146 0 0 chr15 26476697 26476745 -74903776 - L1MA3 LINE L1 0 6305 6258 219 250 250 9 chr15 26476752 26476864 -74903657 - MIR SINE MIR -14 248 110 211 245 6 37 chr15 26477474 26477637 -74902884 + (CA)n Simple_repeat Simple_repeat 1 158 0 1639 244 93 14 chr15 26477665 26478170 -74902351 - L1M4 LINE L1 -1139 5007 4463 430 243 5 60 chr15 26478847 26479032 -74901489 + (CAGA)n Simple_repeat Simple_repeat 4 178 0 462 136 0 0 chr15 26479041 26479122 -74901399 + (TGGA)n Simple_repeat Simple_repeat 4 84 0 313 290 21 14 chr15 26479260 26479405 -74901116 + (TAGA)n Simple_repeat Simple_repeat 2 147 0 236 248 165 15 chr15 26479965 26480098 -74900423 - L1MC/D LINE L1 -1988 5820 5668 280 265 59 82 chr15 26480252 26480471 -74900050 - L1MC/D LINE L1 -2263 5545 5332 2002 101 44 83 chr15 26480648 26481035 -74899486 - THE1C LTR MaLR 0 375 4 11081 101 13 32 chr15 26481038 26482648 -74897873 - THE1C-int LTR MaLR 0 1580 1 2199 117 24 35 chr15 26482650 26483025 -74897496 - THE1C LTR MaLR -2 373 3 608 309 105 39 chr15 26483066 26483429 -74897092 - MLT1J2 LTR MaLR -2 448 62 1026 217 90 32 chr15 26584141 26584418 -74796103 - MLT1E1 LTR MaLR -9 584 292 618 221 231 5 chr15 26584431 26584626 -74795895 - MER70A LTR ERVL -1 471 233 2155 181 98 65 chr15 26584726 26584974 -74795547 - L1MDa LINE L1 -4423 2117 1879 2196 136 3 3 chr15 26584974 26585276 -74795245 + AluSx SINE Alu 1 302 -10 2155 181 98 65 chr15 26585276 26585556 -74794965 - L1MDa LINE L1 -4661 1879 1564 2495 58 0 23 chr15 26585556 26585865 -74794656 - AluY SINE Alu -9 302 1 2155 181 98 65 chr15 26585865 26585948 -74794573 - L1MDa LINE L1 -4976 1564 1485 1994 183 68 8 chr15 26586694 26587092 -74793429 + MER95 LTR ERV 10 431 0 1537 254 81 22 chr15 26587532 26588077 -74792444 + L1ME3A LINE L1 5052 5563 -607 1144 210 75 42 chr15 26588077 26588410 -74792111 - MER2 DNA MER2_type 0 344 1 1537 254 81 22 chr15 26588410 26588510 -74792011 + L1ME3A LINE L1 5563 5656 -514 1359 205 27 102 chr15 26588510 26588914 -74791607 + MLT1A2 LTR MaLR 1 374 0 1537 254 81 22 chr15 26588914 26589097 -74791424 + L1ME3A LINE L1 5656 5924 -246 352 178 55 27 chr15 26589233 26589306 -74791215 - MER70B LTR ERVL -489 89 15 1448 167 42 14 chr15 26589506 26589793 -74790728 - MLT1E1 LTR MaLR -359 295 1 2180 141 0 0 chr15 26589993 26590297 -74790224 - AluSx SINE Alu -8 304 1 804 228 61 88 chr15 26593219 26593548 -74786973 + MLT2D LTR ERVL 47 366 -48 3386 109 56 8 chr15 26593625 26594158 -74786363 - Tigger3(Golem) DNA MER2_type 0 3029 2471 646 293 78 57 chr15 26594272 26594784 -74785737 - HAL1b LINE L1 -809 539 17 1780 152 4 4 chr15 26595986 26596262 -74784259 - AluJb SINE Alu -36 276 1 1801 199 11 16 chr15 26597528 26597895 -74782626 - MLT1A1 LTR MaLR 0 365 1 2360 265 50 4 chr15 26598045 26598781 -74781740 - L1M4 LINE L1 -3013 3133 2364 2635 175 49 35 chr15 26598893 26598945 -74781576 + L1MB7 LINE L1 5437 5487 -697 2532 60 0 3 chr15 26598945 26599243 -74781278 + AluY SINE Alu 1 297 -14 2635 175 49 35 chr15 26599243 26599766 -74780755 + L1MB7 LINE L1 5487 6020 -164 625 178 6 89 chr15 26599793 26599973 -74780548 - FRAM SINE Alu -11 165 1 522 220 78 0 chr15 26599975 26600116 -74780405 + L1MB8 LINE L1 6022 6173 -5 289 186 0 36 chr15 26600203 26600270 -74780251 - L1M3 LINE L1 -580 5603 5541 415 329 72 50 chr15 26600274 26600691 -74779830 + HAL1b LINE L1 351 776 -572 2262 114 0 0 chr15 26601005 26601302 -74779219 + AluSx SINE Alu 3 299 -13 279 276 9 9 chr15 26601359 26601464 -74779057 + L1M4 LINE L1 2148 2252 -3894 2311 91 0 0 chr15 26601880 26602176 -74778345 - AluY SINE Alu -15 296 1 317 232 0 14 chr15 26602328 26602397 -74778124 - MLT2C2 LTR ERVL -396 68 1 9553 160 50 56 chr15 26602397 26604057 -74776464 - ERVL-C2 LTR ERVL -8 5756 4108 2279 77 0 3 chr15 26604057 26604343 -74776178 - AluSg SINE Alu -25 285 1 9553 160 50 56 chr15 26604343 26604616 -74775905 - ERVL-C2 LTR ERVL -1656 4108 3835 207 0 0 0 chr15 26604622 26604645 -74775876 + (GA)n Simple_repeat Simple_repeat 1 23 0 336 227 0 0 chr15 26604650 26604738 -74775783 + G-rich Low_complexity Low_complexity 1 88 0 1612 197 49 12 chr15 26604738 26605083 -74775438 - MLT2D LTR ERVL -36 378 21 490 162 20 10 chr15 26605091 26605190 -74775331 - L1MEc LINE L1 -2352 3863 3764 * 1490 243 33 27 chr15 26605189 26605769 -74774752 - L1M4 LINE L1 -2985 3161 2110 1170 262 25 11 chr15 26605876 26606242 -74774279 - L1MEc LINE L1 -3353 2862 2492 286 235 25 12 chr15 26606271 26606352 -74774169 - L1MEc LINE L1 -4699 1697 1616 1355 302 66 30 chr15 26606440 26607421 -74773100 - L1MEd LINE L1 -2990 3139 2123 1410 279 114 36 chr15 26607767 26609062 -74771459 - L1MEd LINE L1 -4584 1726 299 323 196 59 23 chr15 26609746 26609918 -74770603 - MER5C DNA MER1_type 0 324 57 819 269 18 0 chr15 26610167 26610394 -74770127 - MIR SINE MIR -24 238 8 237 238 71 40 chr15 26610467 26610593 -74769928 + MER117 DNA MER1_type 18 147 -50 30827 93 15 7 chr15 26610954 26615586 -74764935 - L1P3 LINE L1 -557 5597 928 313 277 90 17 chr15 26615686 26615895 -74764626 - L1MC4 LINE L1 -135 7739 7462 317 182 0 15 chr15 26616823 26616889 -74763632 + MIR SINE MIR 87 151 -111 311 314 116 25 chr15 26616949 26617191 -74763330 - MLT1L LTR MaLR -38 577 314 1854 149 53 0 chr15 26618306 26618741 -74761780 - L1MA4A LINE L1 -23 6280 5762 519 190 39 73 chr15 26619156 26619335 -74761186 - HAL1 LINE L1 -662 1845 1673 2550 64 0 13 chr15 26619373 26619684 -74760837 + AluY SINE Alu 1 307 -4 949 186 54 50 chr15 26619763 26619865 -74760656 - L1ME LINE L1 -450 6108 6008 2084 121 55 28 chr15 26619865 26620229 -74760292 - THE1C LTR MaLR -1 374 1 949 186 54 50 chr15 26620229 26620347 -74760174 - L1ME LINE L1 -550 6008 5887 2578 213 53 13 chr15 26620347 26620364 -74760157 - L1ME LINE L1 -1801 4739 4724 1238 218 0 36 chr15 26620364 26620612 -74759909 - MER8 DNA MER2_type 0 239 1 2578 213 53 13 chr15 26620612 26621270 -74759251 - L1ME LINE L1 -1816 4724 4037 963 198 37 29 chr15 26621301 26621543 -74758978 - L1ME LINE L1 -4150 2390 2147 7760 105 4 3 chr15 26621643 26622703 -74757818 - L1P3 LINE L1 -5394 1067 7 186 148 93 0 chr15 26622970 26623024 -74757497 + L2 LINE L2 2475 2533 -781 2377 236 47 24 chr15 26623361 26623683 -74756838 + L1ME3 LINE L1 4882 5195 -969 1783 190 0 10 chr15 26623683 26623988 -74756533 + AluJb SINE Alu 1 302 -10 2377 236 47 24 chr15 26623988 26624710 -74755811 + L1ME3 LINE L1 5195 5942 -222 1789 211 81 86 chr15 26624715 26625317 -74755204 + MLT1E2 LTR MaLR 1 600 -25 334 213 75 94 chr15 26625331 26625491 -74755030 + L1ME3 LINE L1 5991 6147 -15 * 651 160 10 2 chr15 26625475 26625614 -74754907 + L1MA4 LINE L1 5791 5930 -244 232 304 63 58 chr15 26625707 26625914 -74754607 + L2 LINE L2 2870 3077 -236 1013 210 63 60 chr15 26627349 26627667 -74752854 + LTR55 LTR ERV 1 319 -229 256 196 0 0 chr15 26627667 26627713 -74752808 - MLT2C1 LTR ERVL 0 397 352 2348 139 106 24 chr15 26627725 26628011 -74752510 + Tigger3b DNA MER2_type 1 262 -2766 549 80 0 0 chr15 26628011 26628086 -74752435 + (TA)n Simple_repeat Simple_repeat 1 75 0 2455 79 7 0 chr15 26628086 26628390 -74752131 - AluY SINE Alu -5 306 1 2348 139 106 24 chr15 26628390 26628525 -74751996 + Tigger3b DNA MER2_type 261 458 -773 242 249 83 89 chr15 26628892 26628940 -74751581 - L1ME4a LINE L1 -21 6100 6053 1769 158 10 29 chr15 26628940 26629250 -74751271 + AluJb SINE Alu 5 308 -4 242 249 83 89 chr15 26629250 26629370 -74751151 - L1ME4a LINE L1 -68 6053 5933 343 287 79 43 chr15 26629430 26629594 -74750927 + MLT1J2 LTR MaLR 1 170 -276 363 207 157 41 chr15 26629734 26629911 -74750610 + MLT1J1 LTR MaLR 207 460 -51 890 259 32 41 chr15 26630211 26630555 -74749966 - L1ME4a LINE L1 -219 5951 5611 915 292 216 17 chr15 26630555 26630878 -74749643 - L2 LINE L2 -245 3068 2811 2350 82 3 16 chr15 26630878 26631182 -74749339 - AluSg SINE Alu -10 300 1 915 292 216 17 chr15 26631182 26631771 -74748750 - L2 LINE L2 -502 2811 1976 275 299 84 13 chr15 26631926 26632080 -74748441 - MIR3 SINE MIR -37 171 7 235 259 0 0 chr15 26632763 26632817 -74747704 + (TA)n Simple_repeat Simple_repeat 1 54 0 2300 128 31 31 chr15 26634763 26635121 -74745400 - THE1B LTR MaLR -6 358 1 2369 125 25 0 chr15 26635756 26636109 -74744412 + THE1B LTR MaLR 1 362 -2 8450 104 24 36 chr15 26636109 26637365 -74743156 + THE1B-int LTR MaLR 4 1244 -336 4853 147 17 40 chr15 26637486 26638362 -74742159 - MER4D LTR ERV1 -46 857 2 2288 79 46 74 chr15 26638425 26639145 -74741376 - MER4A LTR ERV1 0 779 1 905 293 53 20 chr15 26639300 26639655 -74740866 + MLT1I LTR MaLR 10 376 -33 425 239 101 14 chr15 26639795 26639933 -74740588 - MER74B LTR ERVL 0 622 473 1971 191 22 29 chr15 26640102 26640511 -74740010 - MER74A LTR ERVL -152 406 1 348 358 3 52 chr15 26640522 26640849 -74739672 - L1M4 LINE L1 -3726 2420 2110 2096 155 0 0 chr15 26641232 26641542 -74738979 - AluSx SINE Alu -2 310 1 9275 197 11 14 chr15 26641838 26643351 -74737170 - L1 LINE L1 -1862 4284 2768 2575 52 0 26 chr15 26643351 26643661 -74736860 + AluY SINE Alu 1 302 -9 225 0 0 0 chr15 26643661 26643686 -74736835 + (TA)n Simple_repeat Simple_repeat 2 26 0 9275 197 11 14 chr15 26643686 26644147 -74736374 - L1 LINE L1 -3376 2770 2315 2005 209 111 3 chr15 26644141 26645547 -74734974 - L1PBa LINE L1 -5159 1704 2 * 334 200 0 0 chr15 26645604 26645659 -74734862 + Tigger5 DNA MER2_type 1 55 -2268 387 203 0 0 chr15 26645661 26645730 -74734791 + Tigger5 DNA MER2_type 2255 2323 0 2327 92 14 0 chr15 26646019 26646313 -74734208 - AluSc SINE Alu -11 298 1 21 0 0 0 chr15 26646334 26646355 -74734166 + AT_rich Low_complexity Low_complexity 1 21 0 1743 140 4 0 chr15 26646360 26646617 -74733904 - Tigger3(Golem) DNA MER2_type -1 3028 2771 547 178 0 0 chr15 26646614 26646704 -74733817 - Tigger3(Golem) DNA MER2_type -2887 142 53 * 450 283 94 11 chr15 26647259 26647439 -74733082 - LTR33 LTR ERVL -322 199 5 2093 150 17 0 chr15 26648641 26648941 -74731580 + AluJb SINE Alu 1 305 -7 257 313 61 17 chr15 26650436 26650551 -74729970 - L2 LINE L2 -22 3291 3172 888 291 86 78 chr15 26650717 26651690 -74728831 - L2 LINE L2 -420 2894 1914 216 305 136 0 chr15 26652166 26652284 -74728237 + MIR SINE MIR 117 250 -12 2394 139 50 5 chr15 26652457 26652860 -74727661 - MSTB LTR MaLR -5 421 1 214 317 159 21 chr15 26654261 26654406 -74726115 - L2 LINE L2 -209 3063 2899 233 232 73 12 chr15 26656193 26656275 -74724246 + L2 LINE L2 2683 2769 -545 235 239 34 80 chr15 26656542 26656630 -74723891 + L2 LINE L2 3183 3266 -47 273 98 0 0 chr15 26656640 26656681 -74723840 + (TGGA)n Simple_repeat Simple_repeat 1 41 0 371 363 71 8 chr15 26660265 26660505 -74720016 - MIR SINE MIR 0 262 8 26 0 0 0 chr15 26660718 26660744 -74719777 + AT_rich Low_complexity Low_complexity 1 26 0 1136 123 0 27 chr15 26660769 26660988 -74719533 - L1MA4 LINE L1 -10 6290 6078 411 21 0 0 chr15 26661462 26661510 -74719011 + (TG)n Simple_repeat Simple_repeat 1 48 0 364 341 66 23 chr15 26662063 26662321 -74718200 - L3 LINE CR1 -199 1378 1110 300 249 55 73 chr15 26662323 26662488 -74718033 - L1ME4a LINE L1 0 6121 5960 2425 160 9 21 chr15 26662907 26663338 -74717183 - MSTB LTR MaLR 0 426 1 9176 152 38 15 chr15 26663339 26664916 -74715605 - MSTB-int LTR MaLR -1 1650 37 2523 113 23 57 chr15 26664934 26665375 -74715146 - MSTB LTR MaLR 0 426 1 233 246 33 8 chr15 26665428 26665550 -74714971 - L1ME4a LINE L1 -753 5393 5269 2591 69 3 0 chr15 26665734 26666038 -74714483 - AluY SINE Alu -6 305 1 23 33 0 0 chr15 26666040 26666070 -74714451 + AT_rich Low_complexity Low_complexity 1 30 0 367 317 51 31 chr15 26666382 26666744 -74713777 - L1ME4a LINE L1 -1536 4610 4100 522 306 19 40 chr15 26666866 26667242 -74713279 - L1ME4a LINE L1 -3624 2522 2155 319 373 63 0 chr15 26667577 26667735 -74712786 - HAL1 LINE L1 -814 1693 1526 839 199 86 0 chr15 26669069 26669255 -74711266 + MER58A DNA MER1_type 19 220 -4 1467 258 37 52 chr15 26669255 26669817 -74710704 - MER74B LTR ERVL 0 622 69 356 173 95 19 chr15 26669823 26669929 -74710592 + FLAM SINE Alu 66 131 -2 234 116 0 0 chr15 26670137 26670180 -74710341 + (TG)n Simple_repeat Simple_repeat 1 43 0 201 259 0 28 chr15 26672089 26672197 -74708324 + (TG)n Simple_repeat Simple_repeat 1 105 0 449 251 34 23 chr15 26672209 26672384 -74708137 + (TATG)n Simple_repeat Simple_repeat 4 180 0 188 178 0 22 chr15 26672442 26672487 -74708034 + (TG)n Simple_repeat Simple_repeat 1 44 0 301 270 35 26 chr15 26672488 26672603 -74707918 + (TATATG)n Simple_repeat Simple_repeat 4 119 0 232 171 45 11 chr15 26672606 26672694 -74707827 + (TG)n Simple_repeat Simple_repeat 2 92 0 338 200 75 13 chr15 26673353 26673433 -74707088 + MIR SINE MIR 67 152 -56 298 307 44 15 chr15 26674193 26674330 -74706191 - LTR33 LTR ERVL 0 521 381 1964 178 138 10 chr15 26674628 26675033 -74705488 + LTR32 LTR ERVL 15 471 0 2144 128 20 0 chr15 26675478 26675775 -74704746 + AluSx SINE Alu 1 303 -9 2295 58 3 88 chr15 26675777 26676107 -74704414 + AluY SINE Alu 1 302 -9 213 94 0 0 chr15 26676298 26676330 -74704191 + (TAA)n Simple_repeat Simple_repeat 1 32 0 1824 270 55 24 chr15 26676586 26677308 -74703213 + L1MC3 LINE L1 5856 6600 -1185 1601 181 45 3 chr15 26677367 26677681 -74702840 + MSTB LTR MaLR 98 424 -2 741 205 19 0 chr15 26677684 26677840 -74702681 + L1MC3 LINE L1 6616 6774 -1011 384 288 107 0 chr15 26678939 26679116 -74701405 - L1MC/D LINE L1 -2010 5798 5603 614 264 48 32 chr15 26679572 26679901 -74700620 + L1M4b LINE L1 -254 119 -6165 1500 137 46 76 chr15 26679958 26680287 -74700234 + MER2 DNA MER2_type 25 343 -2 1535 189 80 141 chr15 26680290 26681521 -74699000 + L1M4b LINE L1 377 1478 -4906 195 42 0 0 chr15 26681521 26681545 -74698976 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1535 189 80 141 chr15 26681545 26681656 -74698865 + L1M4b LINE L1 1478 1594 -4790 2406 98 0 0 chr15 26681658 26681954 -74698567 + AluSx SINE Alu 1 296 -16 260 210 0 0 chr15 26683602 26683664 -74696857 + A-rich Low_complexity Low_complexity 1 62 0 830 155 8 0 chr15 26683701 26683830 -74696691 + FLAM_C SINE Alu 1 130 -13 354 246 38 121 chr15 26683838 26684184 -74696337 + L1M4b LINE L1 1645 2112 -4451 380 356 20 57 chr15 26684214 26684461 -74696060 + L1MEc LINE L1 1734 1971 -4425 186 161 0 0 chr15 26685399 26685430 -74695091 - L2 LINE L2 -18 3254 3224 185 246 92 0 chr15 26685432 26685497 -74695024 - MIR SINE MIR -92 170 100 1828 206 96 0 chr15 26685497 26685934 -74694587 - MLT2B1 LTR ERVL 0 520 42 3576 148 39 0 chr15 26686780 26687427 -74693094 - L1PB4 LINE L1 -1 6155 5484 5544 197 12 11 chr15 26687427 26688629 -74691892 - L1PB4 LINE L1 -1024 5122 3919 1163 139 0 0 chr15 26688625 26688819 -74691702 + L1PB4 LINE L1 3725 3918 -2228 * 303 278 167 17 chr15 26691277 26691457 -74689064 + L2 LINE L2 3014 3220 -93 182 71 0 71 chr15 26694927 26694969 -74685552 + (GGAGAA)n Simple_repeat Simple_repeat 5 43 0 281 129 0 32 chr15 26695472 26695534 -74684987 + (CCG)n Simple_repeat Simple_repeat 3 62 0 42 71 0 0 chr15 26695616 26695700 -74684821 + GC_rich Low_complexity Low_complexity 1 84 0 21 0 0 0 chr15 26695876 26695897 -74684624 + GC_rich Low_complexity Low_complexity 1 21 0 28 71 0 0 chr15 26695925 26695981 -74684540 + GC_rich Low_complexity Low_complexity 1 56 0 2396 101 0 3 chr15 26696397 26696704 -74683817 + AluSx SINE Alu 1 306 -6 379 325 55 39 chr15 26696704 26696948 -74683573 + L1MEc LINE L1 2728 2978 -3237 380 214 43 43 chr15 26697647 26697764 -74682757 + MLT1G1 LTR MaLR 477 593 -2 225 246 53 79 chr15 26697853 26697967 -74682554 + MIR SINE MIR 134 244 -18 1614 137 63 3 chr15 26698112 26698397 -74682124 + AluJo SINE Alu 1 302 -10 1897 68 129 4 chr15 26698398 26698662 -74681859 + AluSg1 SINE Alu 1 297 -12 1416 104 62 78 chr15 26699606 26699655 -74680866 + L1MA8 LINE L1 5988 6036 -255 2526 62 7 0 chr15 26699655 26699959 -74680562 + AluSp SINE Alu 1 306 -7 1416 104 62 78 chr15 26699959 26700218 -74680303 + L1MA8 LINE L1 6036 6291 0 1174 182 146 3 chr15 26700826 26701158 -74679363 - MER47B DNA MER2_type -1 417 1 181 158 70 70 chr15 26701383 26701440 -74679081 + MIR SINE MIR 19 75 -133 295 286 107 58 chr15 26701539 26701745 -74678776 + MLT1K LTR MaLR 329 544 -44 201 113 16 32 chr15 26702202 26702264 -74678257 + (CGCGG)n Simple_repeat Simple_repeat 4 64 0 25 0 0 0 chr15 26704447 26704472 -74676049 + AT_rich Low_complexity Low_complexity 1 25 0 1518 226 54 41 chr15 26707401 26707865 -74672656 + L2 LINE L2 2843 3312 -1 2134 89 25 70 chr15 26710314 26710641 -74669880 - AluSx SINE Alu 0 312 1 2185 122 44 33 chr15 26710718 26711078 -74669443 - THE1B LTR MaLR 0 364 1 247 344 258 7 chr15 26711429 26711580 -74668941 - MIR SINE MIR -73 189 1 238 241 19 0 chr15 26711960 26712014 -74668507 + MIR SINE MIR 87 141 -67 553 278 137 26 chr15 26712073 26712386 -74668135 - LTR50 LTR ERVL -26 769 422 2552 282 84 54 chr15 26712596 26714123 -74666398 - ERVL LTR ERVL -321 5443 3871 965 159 17 82 chr15 26714126 26714234 -74666287 - MER20 DNA MER1_type 0 219 132 2818 175 35 14 chr15 26714234 26714743 -74665778 + MLT2B1 LTR ERVL 1 520 0 965 159 17 82 chr15 26714743 26714867 -74665654 - MER20 DNA MER1_type -87 132 2 1042 339 91 5 chr15 26714883 26715521 -74665000 - ERVL LTR ERVL -1904 3860 3168 4595 126 54 26 chr15 26715778 26716826 -74663695 + MER52C LTR ERV1 1 1278 0 1367 302 62 53 chr15 26716833 26717106 -74663415 - ERVL LTR ERVL -2944 2820 2551 2319 111 0 0 chr15 26717106 26717404 -74663117 + AluSx SINE Alu 1 298 -14 1367 302 62 53 chr15 26717404 26717992 -74662529 - ERVL LTR ERVL -3213 2551 1952 1607 249 89 31 chr15 26718290 26718765 -74661756 - L1ME2 LINE L1 -9 6155 5638 1533 118 107 48 chr15 26718765 26718910 -74661611 + AluSx SINE Alu 1 136 -176 2282 89 3 3 chr15 26718910 26719202 -74661319 + AluSg1 SINE Alu 1 292 -17 1533 118 107 48 chr15 26719202 26719345 -74661176 + AluSx SINE Alu 136 306 -6 1607 249 89 31 chr15 26719345 26719456 -74661065 - L1ME2 LINE L1 -526 5638 5535 200 310 70 10 chr15 26720153 26720253 -74660268 - L2 LINE L2 -3 3269 3164 222 284 91 11 chr15 26720438 26720526 -74659995 - MIR SINE MIR -140 122 28 2574 158 68 24 chr15 26721676 26722190 -74658331 - MER21A LTR ERV1 0 931 272 2686 55 0 0 chr15 26722190 26722499 -74658022 - AluY SINE Alu -2 309 1 2574 158 68 24 chr15 26722499 26722784 -74657737 - MER21A LTR ERV1 -659 272 1 23 0 0 0 chr15 26722925 26722948 -74657573 + AT_rich Low_complexity Low_complexity 1 23 0 1508 153 122 68 chr15 26723298 26723709 -74656812 - LTR12 LTR ERV1 -229 485 53 252 231 0 0 chr15 26723709 26723761 -74656760 - LTR30 LTR ERV1 -670 52 1 1361 272 91 13 chr15 26723842 26724185 -74656336 - LTR19-int LTR ERV1 -3744 3152 2762 2403 65 0 43 chr15 26724185 26724509 -74656012 - AluY SINE Alu 0 311 2 1361 272 91 13 chr15 26724509 26724629 -74655892 - LTR19-int LTR ERV1 -4134 2762 2653 584 148 142 6 chr15 26724819 26724988 -74655533 - LTR19-int LTR ERV1 -2321 3265 3074 2329 88 0 7 chr15 26725151 26725446 -74655075 - AluSc SINE Alu -16 293 1 280 273 118 0 chr15 26725514 26725624 -74654897 + MER94 DNA DNA 12 134 0 3999 148 19 3 chr15 26726358 26727026 -74653495 + MER54B LTR ERVL 4 682 -111 797 232 0 4 chr15 26727571 26727853 -74652668 + (TGGA)n Simple_repeat Simple_repeat 1 280 0 588 212 11 6 chr15 26727878 26728057 -74652464 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 249 286 18 0 chr15 26728124 26728180 -74652341 + L2 LINE L2 3246 3302 -11 354 230 147 9 chr15 26728998 26729175 -74651346 + L1MC4a LINE L1 6441 6604 -1204 1478 238 86 52 chr15 26729229 26729287 -74651234 + L1MC4 LINE L1 6870 6925 -1117 2072 149 10 0 chr15 26729287 26729596 -74650925 + AluJo SINE Alu 1 312 0 1478 238 86 52 chr15 26729596 26730383 -74650138 + L1MC4 LINE L1 6925 7902 -140 1464 105 0 11 chr15 26730467 26730657 -74649864 + AluSq SINE Alu 1 188 -125 4063 115 3 2 chr15 26730658 26731248 -74649273 + LTR10C LTR ERV1 1 591 0 513 332 103 19 chr15 26731250 26731512 -74649009 + LTR10C-int LTR ERV1 6 289 -6360 321 213 82 57 chr15 26731792 26731942 -74648579 + L1MC4 LINE L1 6500 6702 -1139 208 175 25 0 chr15 26731943 26731983 -74648538 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 323 253 0 74 chr15 26731992 26732087 -74648434 + L1MC4 LINE L1 6615 6702 -1340 313 286 0 33 chr15 26732108 26732199 -74648322 + L1MC4 LINE L1 6615 6702 -1340 310 300 22 11 chr15 26732231 26732321 -74648200 + L1MC4 LINE L1 6614 6704 -1338 323 231 14 53 chr15 26732334 26732475 -74648046 + L1MC4 LINE L1 6558 6646 -1139 308 235 0 98 chr15 26732423 26732525 -74647996 - L1MC4 LINE L1 -1339 6703 6612 * 313 242 33 55 chr15 26732490 26732581 -74647940 + L1MC4 LINE L1 6614 6702 -1340 303 258 11 54 chr15 26732588 26732681 -74647840 + L1MC4 LINE L1 6614 6702 -1340 294 148 0 37 chr15 26732682 26732763 -74647758 + (CATATA)n Simple_repeat Simple_repeat 2 79 0 341 223 32 64 chr15 26732763 26732857 -74647664 + L1MC4 LINE L1 6614 6704 -1338 417 298 0 0 chr15 26733319 26733460 -74647061 + A-rich Low_complexity Low_complexity 1 141 0 2015 131 64 43 chr15 26733470 26733751 -74646770 + Harlequin LTR ERV1 1896 2170 -4726 2285 96 3 3 chr15 26733751 26734043 -74646478 + AluY SINE Alu 1 292 -19 2015 131 64 43 chr15 26734043 26734324 -74646197 + Harlequin LTR ERV1 2170 2470 -4426 438 306 19 0 chr15 26734551 26734708 -74645813 + L1MCc LINE L1 264 423 -6000 246 288 14 0 chr15 26734812 26734885 -74645636 - L1MCc LINE L1 -5507 916 843 2366 258 59 49 chr15 26734902 26736231 -74644290 + L1MCc LINE L1 1192 2507 -4615 2266 111 3 16 chr15 26736231 26736538 -74643983 + AluSx SINE Alu 1 303 -9 2366 258 59 49 chr15 26736538 26736866 -74643655 + L1MCc LINE L1 2507 2830 -4292 1577 129 37 0 chr15 26736866 26737083 -74643438 + AluSx SINE Alu 1 225 -87 2366 258 59 49 chr15 26737083 26737183 -74643338 + L1MCc LINE L1 2830 3177 -3945 2136 132 3 3 chr15 26737960 26738255 -74642266 - AluSx SINE Alu -17 295 1 226 232 214 36 chr15 26738535 26738647 -74641874 + MIR SINE MIR 119 250 -12 837 256 156 14 chr15 26738800 26739160 -74641361 + MER20B DNA MER1_type 350 760 -23 218 111 56 0 chr15 26741707 26741743 -74638778 - MER91B DNA MER1_type -129 61 24 730 245 21 21 chr15 26741850 26742038 -74638483 - MER58A DNA MER1_type 0 224 37 289 364 26 7 chr15 26743767 26743921 -74636600 + MIR SINE MIR 92 248 -14 482 113 0 113 chr15 26745573 26745679 -74634842 - AluSg/x SINE Alu -1 308 215 3610 130 37 0 chr15 26745679 26746249 -74634272 - LTR10C LTR ERV1 0 591 1 2421 310 60 23 chr15 26746294 26746454 -74634067 - HERVI LTR ERV1 -79 7706 7553 2455 52 38 0 chr15 26746454 26746743 -74633778 - AluY SINE Alu -11 300 1 2421 310 60 23 chr15 26746743 26747771 -74632750 - HERVI LTR ERV1 -232 7553 6474 4356 146 21 8 chr15 26747874 26748532 -74631989 + L1P LINE L1 3917 4588 -1558 2780 93 3 11 chr15 26748532 26748899 -74631622 + THE1B LTR MaLR 1 364 0 4356 146 21 8 chr15 26748899 26749016 -74631505 + L1P LINE L1 4588 4702 -1444 1096 100 0 17 chr15 26749959 26750139 -74630382 + (TTCC)n Simple_repeat Simple_repeat 1 177 0 360 346 23 8 chr15 26750140 26750270 -74630251 + CT-rich Low_complexity Low_complexity 5 136 0 11656 24 1 1 chr15 26750370 26751721 -74628800 + L1P LINE L1 3537 4888 -1258 6595 103 1 15 chr15 26751821 26752824 -74627697 + L1P LINE L1 2529 3517 -2629 2168 106 0 3 chr15 26754512 26754817 -74625704 - AluSx SINE Alu 0 304 1 1562 197 37 34 chr15 26754817 26755167 -74625354 - MSTD LTR MaLR -43 353 3 1316 234 55 2 chr15 26755340 26755738 -74624783 - L1M4 LINE L1 -2098 5467 5049 522 157 11 0 chr15 26755838 26755927 -74624594 - L1PBa LINE L1 -6773 90 1 * 2579 258 74 14 chr15 26755921 26756858 -74623663 - L1M4 LINE L1 -4311 3254 2262 414 344 176 30 chr15 26756994 26758094 -74622427 - L2 LINE L2 -19 3253 1978 1159 113 0 6 chr15 26758320 26758488 -74622033 - AluSg/x SINE Alu -8 304 138 233 160 0 20 chr15 26758540 26758590 -74621931 + A-rich Low_complexity Low_complexity 2 50 0 1752 156 96 28 chr15 26758832 26759185 -74621336 - MLT1B LTR MaLR -11 379 3 1488 189 84 112 chr15 26759189 26759614 -74620907 + LTR8 LTR ERV1 4 375 -316 535 159 9 28 chr15 26760252 26760359 -74620162 - MER53 DNA DNA -82 107 3 3135 80 0 3 chr15 26761232 26761608 -74618913 - THE1C LTR MaLR 0 375 1 5835 103 4 9 chr15 26761608 26762416 -74618105 - THE1C-int LTR MaLR 0 1580 777 712 268 59 75 chr15 26762998 26763442 -74617079 + MLT1J LTR MaLR 24 511 0 5623 61 12 10 chr15 26763707 26764427 -74616094 - Harlequin LTR ERV1 -5912 984 263 2072 107 20 57 chr15 26764407 26764761 -74615760 - Harlequin LTR ERV1 -6497 399 59 * 2468 50 0 7 chr15 26764933 26765232 -74615289 + AluY SINE Alu 2 298 -13 1282 147 14 9 chr15 26765252 26765463 -74615058 + AluJb SINE Alu 85 296 -16 2082 112 0 10 chr15 26765765 26766069 -74614452 - AluSx SINE Alu -11 301 1 1432 209 0 0 chr15 26766402 26766660 -74613861 - L1PB4 LINE L1 -12 6144 5887 1115 203 16 32 chr15 26767361 26767442 -74613079 + L1 LINE L1 4476 4557 -1589 2341 77 27 0 chr15 26767442 26767740 -74612781 + AluSp SINE Alu 1 306 -7 1115 203 16 32 chr15 26767740 26767909 -74612612 + L1 LINE L1 4557 4722 -1424 13923 53 3 14 chr15 26768020 26769724 -74610797 - Harlequin LTR ERV1 -2517 4379 2693 2682 77 0 0 chr15 26771276 26771613 -74608908 - L1MA2 LINE L1 -370 5934 5598 2089 92 7 50 chr15 26771616 26771949 -74608572 - AluSx SINE Alu 0 312 1 381 229 31 0 chr15 26772111 26772207 -74608314 - MER103 DNA DNA -9 157 59 699 207 94 48 chr15 26772308 26772672 -74607849 + MLT1C LTR MaLR 5 458 -9 1892 77 28 4 chr15 26773058 26773306 -74607215 + L1PA13 LINE L1 5908 6161 -2 1109 146 131 16 chr15 26773376 26773647 -74606874 + MSTA LTR MaLR 91 428 0 198 244 44 0 chr15 26774085 26774130 -74606391 + MIR SINE MIR 72 118 -90 183 239 22 0 chr15 26774569 26774615 -74605906 + L2 LINE L2 3262 3308 -5 213 39 0 0 chr15 26774809 26774835 -74605686 + (TAA)n Simple_repeat Simple_repeat 2 27 0 3803 107 23 12 chr15 26776831 26777020 -74603501 + LTR43 LTR ERV1 25 211 -391 1864 128 7 7 chr15 26777020 26777302 -74603219 + AluSx SINE Alu 16 297 -15 3803 107 23 12 chr15 26777302 26777683 -74602838 + LTR43 LTR ERV1 211 601 -1 459 246 159 34 chr15 26777953 26778217 -74602304 - L1MCa LINE L1 -2572 3854 3558 2328 250 62 22 chr15 26778226 26778430 -74602091 - L1MCa LINE L1 -3599 2827 2632 396 0 0 0 chr15 26778430 26778474 -74602047 + (TG)n Simple_repeat Simple_repeat 2 45 0 2328 250 62 22 chr15 26778474 26779396 -74601125 - L1MCa LINE L1 -3794 2632 1516 840 251 70 18 chr15 26779497 26779827 -74600694 + L1M4 LINE L1 4446 4792 -1354 305 225 25 38 chr15 26779839 26779919 -74600602 - MER5B DNA MER1_type -98 80 2 572 295 116 68 chr15 26780795 26781432 -74599089 - L3 LINE CR1 -259 1318 651 297 297 87 14 chr15 26781649 26781787 -74598734 + MIR SINE MIR 6 153 -109 390 257 176 93 chr15 26781796 26782204 -74598317 - LTR67 LTR ERVL -2 555 114 3710 232 66 28 chr15 26782894 26783773 -74596748 + L1MEc LINE L1 1856 2774 -3441 2627 158 11 34 chr15 26783773 26784215 -74596306 + MSTB1 LTR MaLR 1 432 0 3710 232 66 28 chr15 26784215 26784758 -74595763 + L1MEc LINE L1 2774 3295 -2920 947 101 25 0 chr15 26785408 26785527 -74594994 + FLAM_C SINE Alu 1 122 -11 739 157 45 8 chr15 26785552 26785686 -74594835 - MSTA LTR MaLR -57 371 233 2686 223 29 51 chr15 26785697 26786696 -74593825 + L1M3c LINE L1 800 1794 -4519 1222 209 41 34 chr15 26787713 26788005 -74592516 - MLT1A2 LTR MaLR -78 296 3 299 306 19 37 chr15 26788143 26788414 -74592107 + L1M3c LINE L1 2473 2738 -3644 213 39 0 0 chr15 26788814 26788840 -74591681 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1914 106 26 4 chr15 26788840 26789105 -74591416 + AluSx SINE Alu 1 271 -41 538 225 125 21 chr15 26789653 26789822 -74590699 + MLT1J1 LTR MaLR 21 204 -246 2231 106 27 0 chr15 26789823 26790124 -74590397 - AluSx SINE Alu -3 309 1 353 262 143 60 chr15 26790395 26790731 -74589790 - L2 LINE L2 -543 2771 2408 2439 84 0 0 chr15 26790800 26791096 -74589425 - AluSq SINE Alu -17 296 1 381 216 55 80 chr15 26791098 26791209 -74589312 - L1M4 LINE L1 -4790 1856 1744 203 32 65 0 chr15 26791209 26791240 -74589281 + T-rich Low_complexity Low_complexity 3 35 0 381 216 55 80 chr15 26791240 26791438 -74589083 - L1M4 LINE L1 -4902 1744 1568 495 80 13 13 chr15 26794264 26794339 -74586182 + L1PA13 LINE L1 6082 6156 -7 259 376 50 0 chr15 26795067 26795168 -74585353 + MIR SINE MIR 20 125 -137 645 169 14 21 chr15 26795414 26795556 -74584965 + L1MA4A LINE L1 5983 6123 -180 403 223 0 21 chr15 26795559 26795653 -74584868 + L1MA4A LINE L1 6189 6280 -23 608 218 127 30 chr15 26797371 26797536 -74582985 + MER5A DNA MER1_type 9 189 0 227 230 6 0 chr15 26797769 26797816 -74582705 - MER5B DNA MER1_type -66 123 64 2233 169 0 24 chr15 26797816 26798188 -74582333 + MLT1A1 LTR MaLR 1 363 -2 184 75 25 25 chr15 26800182 26800222 -74580299 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 295 303 0 20 chr15 26800880 26800979 -74579542 - MIR3 SINE MIR -11 197 101 2202 108 0 0 chr15 26801345 26801640 -74578881 - AluSx SINE Alu -17 295 1 700 288 105 58 chr15 26802472 26803062 -74577459 - HAL1 LINE L1 -707 1800 1183 208 184 81 35 chr15 26803475 26803562 -74576959 + (CTGGGG)n Simple_repeat Simple_repeat 4 94 0 11856 65 15 0 chr15 26804002 26805476 -74575045 + Harlequin LTR ERV1 5401 6896 0 1679 203 14 23 chr15 26805476 26805934 -74574587 + LTR2B LTR ERV1 1 490 0 528 233 100 7 chr15 26806164 26806314 -74574207 - MER103 DNA DNA -2 164 1 603 240 0 0 chr15 26806355 26806480 -74574041 - L1M4 LINE L1 -5333 1209 1085 1477 225 37 44 chr15 26806505 26806853 -74573668 - L1M4 LINE L1 -6121 421 75 222 37 0 0 chr15 26806853 26806880 -74573641 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1477 225 37 44 chr15 26806880 26806940 -74573581 - L1M4 LINE L1 -6467 75 16 7906 19 0 4 chr15 26808113 26809057 -74571464 + L1HS LINE L1 5216 6155 0 4545 150 13 29 chr15 26809053 26809427 -74571094 + L1MCa LINE L1 1651 2030 -4396 * 1885 146 53 0 chr15 26809427 26809708 -74570813 + AluSx SINE Alu 1 296 -16 4545 150 13 29 chr15 26809708 26810182 -74570339 + L1MCa LINE L1 2030 2927 -3499 1914 71 71 0 chr15 26810668 26810907 -74569614 + AluSx SINE Alu 1 256 -56 371 201 169 58 chr15 26812439 26812578 -74567943 - MIR3 SINE MIR -43 165 31 260 154 19 0 chr15 26812864 26812916 -74567605 + (CCCCG)n Simple_repeat Simple_repeat 1 53 0 3157 80 2 88 chr15 26813104 26813604 -74566917 + LTR8 LTR ERV1 1 457 -234 607 272 96 27 chr15 26815040 26815320 -74565201 + L1ME4a LINE L1 5174 5433 -729 2266 107 0 0 chr15 26815320 26815610 -74564911 - AluSx SINE Alu -22 290 1 607 272 96 27 chr15 26815610 26815829 -74564692 + L1ME4a LINE L1 5433 5704 -458 831 174 0 0 chr15 26815832 26815964 -74564557 - AluSg/x SINE Alu -8 304 173 367 191 36 20 chr15 26816102 26816252 -74564269 + L1M3 LINE L1 5323 5537 -634 260 178 22 0 chr15 26816389 26816434 -74564087 - LTR16C LTR ERVL -247 244 199 893 279 14 9 chr15 26816467 26816686 -74563835 + LTR16C LTR ERVL 272 491 0 481 309 92 32 chr15 26817066 26817348 -74563173 - L2 LINE L2 -484 2830 2532 2036 122 14 0 chr15 26817915 26818210 -74562311 + AluSq SINE Alu 1 299 -14 2594 55 0 7 chr15 26819574 26819884 -74560637 + AluY SINE Alu 1 308 -3 279 247 50 111 chr15 26819973 26820112 -74560409 + L1ME4a LINE L1 5854 5969 -152 2124 86 32 4 chr15 26820112 26820391 -74560130 + AluSx SINE Alu 1 287 -25 279 247 50 111 chr15 26820391 26820530 -74559991 + L1ME4a LINE L1 5969 6115 -6 369 150 17 0 chr15 26820843 26820903 -74559618 + MLT1A2 LTR MaLR 1 61 -313 1068 257 115 41 chr15 26821217 26821704 -74558817 - LTR33A LTR ERVL 0 523 1 27 0 0 0 chr15 26821882 26821909 -74558612 + AT_rich Low_complexity Low_complexity 1 27 0 670 271 4 62 chr15 26822111 26822355 -74558166 - MLT1K LTR MaLR -3 585 356 266 259 75 75 chr15 26822373 26822547 -74557974 - MLT1K LTR MaLR -359 229 56 1140 170 57 145 chr15 26822624 26822942 -74557579 + AluJb SINE Alu 1 290 -12 222 348 0 65 chr15 26823006 26823111 -74557410 + L2 LINE L2 2487 2580 -734 835 204 122 5 chr15 26823111 26823307 -74557214 - MER20 DNA MER1_type 0 219 1 222 348 0 65 chr15 26823307 26823356 -74557165 + L2 LINE L2 2580 2631 -683 243 0 0 0 chr15 26823362 26823389 -74557132 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1640 171 0 0 chr15 26823485 26823730 -74556791 - AluSx SINE Alu -67 245 1 2024 142 0 43 chr15 26823899 26824223 -74556298 - AluSx SINE Alu -2 310 1 197 332 53 91 chr15 26824301 26824488 -74556033 + L2 LINE L2 2872 3051 -221 184 360 56 11 chr15 26824726 26824815 -74555706 + MIR SINE MIR 61 153 -109 2588 195 9 26 chr15 26825114 26825652 -74554869 + L1MB8 LINE L1 5542 6070 -108 1908 132 0 4 chr15 26825652 26825924 -74554597 + AluSx SINE Alu 1 271 -41 1243 183 12 74 chr15 26826026 26826349 -74554172 + MER83B-int LTR ERV1 2930 3232 -2714 1853 197 52 65 chr15 26826362 26826764 -74553757 + MER83B-int LTR ERV1 2886 3269 -1611 1883 138 0 31 chr15 26826764 26827083 -74553438 + AluSx SINE Alu 1 310 0 1853 197 52 65 chr15 26827083 26827217 -74553304 + MER83B-int LTR ERV1 3269 3403 -1477 1549 210 16 57 chr15 26827281 26827653 -74552868 + MLT1A1 LTR MaLR 1 357 -8 7272 134 33 12 chr15 26827770 26828611 -74551910 + Tigger1 DNA MER2_type 1 877 -1541 2297 125 0 3 chr15 26828611 26828923 -74551598 + AluSq SINE Alu 1 311 -2 7272 134 33 12 chr15 26828923 26829280 -74551241 + Tigger1 DNA MER2_type 877 1225 -1193 614 286 95 8 chr15 26829411 26829663 -74550858 - ERVL LTR ERVL -667 5097 4824 538 295 66 0 chr15 26829779 26829945 -74550576 - ERVL LTR ERVL -1089 4675 4499 315 260 0 0 chr15 26830641 26830714 -74549807 - L1M1 LINE L1 -4193 3372 3300 11055 204 34 20 chr15 26830771 26831127 -74549394 - L1PB2 LINE L1 -3 6148 5799 267 31 0 0 chr15 26831127 26831159 -74549362 + (TG)n Simple_repeat Simple_repeat 2 33 0 11055 204 34 20 chr15 26831159 26832273 -74548248 - L1PB2 LINE L1 -352 5799 4703 2200 142 39 25 chr15 26832273 26832632 -74547889 + THE1B LTR MaLR 1 364 0 11055 204 34 20 chr15 26832632 26832910 -74547611 - L1PB2 LINE L1 -1448 4703 4431 293 0 0 26 chr15 26832910 26832948 -74547573 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 11055 204 34 20 chr15 26832948 26833169 -74547352 - L1PB2 LINE L1 -1720 4431 4215 9252 58 3 2 chr15 26833169 26834237 -74546284 - MER11C LTR ERVK -2 1069 1 11055 204 34 20 chr15 26834237 26835783 -74544738 - L1PB2 LINE L1 -1936 4215 2552 340 285 10 67 chr15 26836271 26836464 -74544057 + L1ME4a LINE L1 5783 5964 -157 237 279 100 56 chr15 26836780 26837049 -74543472 + L1 LINE L1 4736 5016 -1130 516 225 196 35 chr15 26837453 26837603 -74542918 - AluJo SINE Alu -15 297 114 206 81 27 0 chr15 26837603 26837640 -74542881 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 516 225 196 35 chr15 26837640 26837662 -74542859 - AluJo SINE Alu -198 114 97 440 141 0 0 chr15 26837676 26837740 -74542781 - AluSp/q SINE Alu -36 267 204 3456 177 4 2 chr15 26837740 26838295 -74542226 + L1PA12 LINE L1 1030 1585 -5996 3391 148 44 19 chr15 26838293 26838923 -74541598 + L1PA12 LINE L1 2388 3033 -4541 * 243 286 14 0 chr15 26839509 26839579 -74540942 + CT-rich Low_complexity Low_complexity 2 72 0 2246 122 6 3 chr15 26840552 26840864 -74539657 - AluSq SINE Alu 0 313 1 299 267 20 10 chr15 26840999 26841100 -74539421 - MER94 DNA DNA -32 102 1 5265 126 37 16 chr15 26842633 26843468 -74537053 - L1PB2 LINE L1 -5251 895 9 2068 124 0 0 chr15 26843481 26843755 -74536766 - AluSx SINE Alu -15 297 24 1034 175 11 26 chr15 26843755 26843944 -74536577 - MLT1C LTR MaLR -281 186 1 385 249 12 89 chr15 26845033 26845202 -74535319 - LTR2 LTR ERV1 -293 156 1 316 138 17 0 chr15 26845536 26845594 -74534927 - MLT1E LTR MaLR -2 565 507 1523 205 51 32 chr15 26845594 26845964 -74534557 - MSTD LTR MaLR -19 377 1 1764 278 71 14 chr15 26845964 26846234 -74534287 - MLT1E LTR MaLR -56 537 284 2148 148 3 0 chr15 26846234 26846545 -74533976 - AluSp SINE Alu -1 312 1 1764 278 71 14 chr15 26846545 26846782 -74533739 - MLT1E LTR MaLR -309 284 1 1082 237 53 0 chr15 26846820 26847065 -74533456 - MIR SINE MIR -3 259 2 1918 159 37 67 chr15 26848184 26848586 -74531935 + MLT1B LTR MaLR 1 390 0 1443 180 38 52 chr15 26848916 26849260 -74531261 - MER44D DNA MER2_type 0 609 1 2303 89 10 0 chr15 26850102 26850394 -74530127 + AluSx SINE Alu 1 295 -17 242 186 0 0 chr15 26850719 26850762 -74529759 - tRNA-Phe-TTC tRNA tRNA -33 43 1 25 31 0 0 chr15 26851151 26851183 -74529338 + AT_rich Low_complexity Low_complexity 1 32 0 2280 87 13 0 chr15 26851190 26851488 -74529033 - AluY SINE Alu -7 304 3 21 36 0 0 chr15 26852292 26852320 -74528201 + AT_rich Low_complexity Low_complexity 1 28 0 5669 150 12 7 chr15 26852768 26853683 -74526838 - L1MA4 LINE L1 -9 6291 5382 189 74 0 0 chr15 26853683 26853710 -74526811 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2024 134 0 0 chr15 26853710 26853993 -74526528 - AluSx SINE Alu -29 283 1 5669 150 12 7 chr15 26853993 26854126 -74526395 - L1MA4 LINE L1 -917 5383 5237 1817 166 11 0 chr15 26854901 26855184 -74525337 + AluJo SINE Alu 1 286 -26 323 190 267 0 chr15 26855379 26855495 -74525026 + LTR40a LTR ERVL 1 147 -372 547 299 35 31 chr15 26855675 26855929 -74524592 + LTR40b LTR ERVL 203 457 -5 2257 101 3 0 chr15 26856038 26856335 -74524186 + AluSx SINE Alu 1 298 -14 428 253 102 49 chr15 26857986 26858180 -74522341 + MIR SINE MIR 15 216 -46 394 18 36 0 chr15 26858218 26858273 -74522248 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 25 51 0 0 chr15 26858374 26858413 -74522108 + AT_rich Low_complexity Low_complexity 1 39 0 959 189 0 0 chr15 26858706 26858865 -74521656 + FRAM SINE Alu 1 159 -17 2010 151 0 10 chr15 26858876 26859180 -74521341 + AluSx SINE Alu 9 309 -3 2175 130 0 3 chr15 26860364 26860663 -74519858 - AluJb SINE Alu -12 300 3 21 36 0 0 chr15 26861228 26861256 -74519265 + AT_rich Low_complexity Low_complexity 1 28 0 2385 94 3 0 chr15 26861361 26861669 -74518852 - AluSc SINE Alu 0 309 1 53 17 0 0 chr15 26861995 26862055 -74518466 + AT_rich Low_complexity Low_complexity 1 60 0 1207 97 0 0 chr15 26862056 26862221 -74518300 - L1PA13 LINE L1 -19 6144 5980 3082 71 23 2 chr15 26862670 26863105 -74517416 + L1P LINE L1 4006 4449 -1697 1555 81 0 5 chr15 26863094 26863316 -74517205 + L1P LINE L1 4710 4930 -1216 * 486 314 35 6 chr15 26864916 26865088 -74515433 + MIR SINE MIR 80 256 -6 2321 88 3 0 chr15 26865558 26865855 -74514666 + AluSp SINE Alu 1 298 -15 675 24 0 0 chr15 26865858 26865940 -74514581 + L1PA5 LINE L1 6072 6153 -1 26 0 0 0 chr15 26866033 26866059 -74514462 + AT_rich Low_complexity Low_complexity 1 26 0 891 265 49 73 chr15 26866066 26866519 -74514002 - L2 LINE L2 0 3313 2872 209 281 135 11 chr15 26867166 26867255 -74513266 + MIR3 SINE MIR 109 208 0 188 122 24 0 chr15 26867603 26867644 -74512877 + A-rich Low_complexity Low_complexity 6 47 0 24 0 0 0 chr15 26868159 26868183 -74512338 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr15 26868598 26868624 -74511897 + AT_rich Low_complexity Low_complexity 1 26 0 318 251 57 109 chr15 26868946 26869157 -74511364 - LTR41 LTR ERVL -564 209 10 207 326 174 0 chr15 26869201 26869299 -74511222 + L2 LINE L2 2233 2347 -967 26 0 0 0 chr15 26869382 26869408 -74511113 + AT_rich Low_complexity Low_complexity 1 26 0 664 263 103 22 chr15 26869701 26869933 -74510588 - MIR SINE MIR -7 255 5 3524 188 42 39 chr15 26869957 26870477 -74510044 + L1MB4 LINE L1 4415 4932 -1248 2587 185 9 0 chr15 26870477 26870936 -74509585 + MLT1C LTR MaLR 5 467 0 3524 188 42 39 chr15 26870936 26871728 -74508793 + L1MB4 LINE L1 4932 5720 -460 2106 120 3 3 chr15 26871728 26872027 -74508494 + AluSc SINE Alu 1 299 -10 3524 188 42 39 chr15 26872027 26872131 -74508390 + L1MB4 LINE L1 5720 5822 -358 2189 105 0 13 chr15 26872131 26872436 -74508085 + AluSc SINE Alu 1 301 -8 3524 188 42 39 chr15 26872436 26872773 -74507748 + L1MB4 LINE L1 5822 6174 -6 421 252 101 0 chr15 26873153 26873272 -74507249 - MIR SINE MIR 0 262 132 415 341 7 7 chr15 26873532 26873667 -74506854 + L2 LINE L2 3137 3271 -1 22 0 0 0 chr15 26874290 26874312 -74506209 + AT_rich Low_complexity Low_complexity 1 22 0 2271 99 3 0 chr15 26876291 26876583 -74503938 + AluSx SINE Alu 1 293 -19 3521 135 4 0 chr15 26877238 26877765 -74502756 - LTR26B LTR ERV1 -2 529 1 997 65 43 0 chr15 26878637 26878775 -74501746 - L1MA2 LINE L1 -5 6299 6156 1197 93 0 0 chr15 26879598 26879749 -74500772 + AluSq/x SINE Alu 1 151 -161 2688 97 11 3 chr15 26881616 26881988 -74498533 + THE1C LTR MaLR 1 375 0 2485 79 93 109 chr15 26881988 26882484 -74498037 + THE1C-int LTR MaLR 1 488 -1092 6753 179 86 20 chr15 26882585 26884024 -74496497 + MER52A LTR ERV1 223 1755 0 180 111 0 0 chr15 26884248 26884275 -74496246 + (GA)n Simple_repeat Simple_repeat 1 27 0 226 315 0 0 chr15 26884767 26884840 -74495681 + GA-rich Low_complexity Low_complexity 2 74 0 992 224 42 125 chr15 26885435 26886081 -74494440 - L1MC4 LINE L1 -744 7217 6626 646 308 119 18 chr15 26886231 26886725 -74493796 - L1M4 LINE L1 -3444 2702 2159 820 199 6 0 chr15 26887266 26887442 -74493079 - L1MB3 LINE L1 -197 5986 5810 579 266 10 3 chr15 26887561 26887704 -74492817 + MER45A DNA AcHobo 28 169 -9 609 242 25 80 chr15 26887755 26887861 -74492660 - L1MB3 LINE L1 -1393 4753 4643 2404 59 16 7 chr15 26887861 26888168 -74492353 - AluY SINE Alu -1 310 1 609 242 25 80 chr15 26888168 26888375 -74492146 - L1MB3 LINE L1 -1503 4643 4457 2670 192 58 12 chr15 26888429 26888679 -74491842 - L1MB2 LINE L1 -123 6048 5811 2280 141 88 8 chr15 26888679 26889075 -74491446 + MSTA LTR MaLR 1 428 0 2670 192 58 12 chr15 26889075 26889465 -74491056 - L1MB2 LINE L1 -360 5811 5379 2715 191 12 20 chr15 26889466 26890014 -74490507 - MLT2B3 LTR ERVL -19 514 1 1544 228 24 2 chr15 26890014 26890431 -74490090 - L1MB2 LINE L1 -782 5364 4939 2612 72 8 3 chr15 26890437 26890800 -74489721 + THE1-int LTR MaLR 61 425 -1155 2339 98 0 0 chr15 26890801 26891098 -74489423 - AluSq SINE Alu -16 297 1 5249 204 39 43 chr15 26891179 26891788 -74488733 - L1MB2 LINE L1 -1265 4881 4271 270 0 0 0 chr15 26891788 26891818 -74488703 + (TG)n Simple_repeat Simple_repeat 1 30 0 5249 204 39 43 chr15 26891818 26892731 -74487790 - L1MB2 LINE L1 -1875 4271 3365 1166 241 31 3 chr15 26892731 26893054 -74487467 - L1MB2 LINE L1 -3208 2938 2607 2176 121 0 0 chr15 26893055 26893344 -74487177 - AluSq SINE Alu -22 291 3 236 300 28 67 chr15 26893895 26894075 -74486446 - HAL1b LINE L1 -825 523 351 263 184 0 36 chr15 26894079 26894146 -74486375 + L1MC/D LINE L1 5541 5598 -644 2222 108 0 3 chr15 26896291 26896597 -74483924 + AluSx SINE Alu 1 305 -7 319 234 86 78 chr15 26899515 26899771 -74480750 - Charlie7 DNA MER1_type -144 2468 2211 569 290 30 21 chr15 26901212 26901537 -74478984 + MLT1I LTR MaLR 40 400 -9 2242 88 0 3 chr15 26901838 26902146 -74478375 - AluSq SINE Alu 0 307 1 180 0 0 0 chr15 26902308 26902328 -74478193 + (TTTTTA)n Simple_repeat Simple_repeat 6 25 0 * 225 309 55 55 chr15 26902323 26902433 -74478088 + L2 LINE L2 3204 3313 0 446 324 56 42 chr15 26902444 26902660 -74477861 + L3 LINE CR1 909 1127 -450 270 402 49 0 chr15 26903098 26903282 -74477239 - MIR SINE MIR -50 212 20 * 381 302 225 26 chr15 26903278 26903589 -74476932 + L3 LINE CR1 1204 1576 -1 1701 185 6 10 chr15 26904447 26904760 -74475761 + AluJo SINE Alu 1 312 0 3424 148 50 62 chr15 26904903 26905664 -74474857 + HUERS-P1 LTR ERV1 4449 5200 -746 2284 135 120 5 chr15 26905665 26906049 -74474472 - MSTA LTR MaLR 0 428 1 7388 186 126 8 chr15 26906049 26907526 -74472995 - MSTA-int LTR MaLR 0 1651 1 2362 132 62 34 chr15 26907526 26907942 -74472579 - MSTA LTR MaLR 0 428 1 1448 190 45 23 chr15 26907942 26908006 -74472515 + HUERS-P1 LTR ERV1 5430 5491 -840 2627 103 13 19 chr15 26908006 26908383 -74472138 + THE1C LTR MaLR 1 375 0 1448 190 45 23 chr15 26908383 26908671 -74471850 + HUERS-P1 LTR ERV1 5491 5790 -541 1280 167 140 39 chr15 26908683 26909018 -74471503 + HUERS-P1 LTR ERV1 5906 6274 -57 764 272 22 0 chr15 26909103 26909287 -74471234 + HUERS-P1 LTR ERV1 5950 6137 -126 2779 205 24 56 chr15 26909372 26910069 -74470452 + LTR8 LTR ERV1 16 690 -1 2207 99 0 13 chr15 26913095 26913399 -74467122 - AluSq SINE Alu -13 300 1 311 295 0 36 chr15 26913494 26913606 -74466915 - L1MC5 LINE L1 -145 7816 7709 344 254 30 52 chr15 26914218 26914352 -74466169 - HAL1 LINE L1 -122 2385 2255 690 291 225 44 chr15 26914622 26914739 -74465782 - HAL1 LINE L1 -698 1809 1715 1884 115 26 36 chr15 26914739 26914986 -74465535 - L1PA15 LINE L1 0 6165 5920 2224 76 7 0 chr15 26914986 26915275 -74465246 + AluSx SINE Alu 1 291 -21 1884 115 26 36 chr15 26915275 26915332 -74465189 - L1PA15 LINE L1 -245 5920 5864 690 291 225 44 chr15 26915332 26916742 -74463779 - HAL1 LINE L1 -792 1715 5 1131 181 84 50 chr15 26917033 26917354 -74463167 - L1MC/D LINE L1 -2199 5586 5255 202 268 0 0 chr15 26920613 26920654 -74459867 + polypyrimidine Low_complexity Low_complexity 3 43 0 1325 281 144 29 chr15 26921530 26922217 -74458304 - L1MC4a LINE L1 -743 5403 5092 2145 88 3 0 chr15 26922217 26922500 -74458021 - AluSx SINE Alu -28 284 1 1325 281 144 29 chr15 26922500 26922647 -74457874 - L1MC4a LINE L1 -1054 5092 4963 216 292 90 11 chr15 26923413 26923502 -74457019 + MIR3 SINE MIR 59 154 -54 650 265 132 0 chr15 26925514 26925703 -74454818 + Charlie1 DNA MER1_type 1 214 -2547 230 278 14 14 chr15 26925720 26925792 -74454729 + Charlie1 DNA MER1_type 2633 2704 -57 704 220 81 47 chr15 26926555 26926928 -74453593 - MLT1C LTR MaLR 0 467 5 367 229 31 0 chr15 26927029 26927125 -74453396 + MER103 DNA DNA 59 157 -9 1586 116 13 0 chr15 26927287 26927512 -74453009 + AluSq SINE Alu 1 228 -85 357 24 0 0 chr15 26927535 26927577 -74452944 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 346 229 106 39 chr15 26927622 26927801 -74452720 - HAL1 LINE L1 -95 2412 2222 259 290 0 0 chr15 26928082 26928151 -74452370 + MIR SINE MIR 159 227 -35 338 254 12 83 chr15 26928507 26928676 -74451845 - HAL1 LINE L1 -949 1558 1402 2156 89 3 10 chr15 26929526 26929818 -74450703 - AluSg SINE Alu -18 292 3 340 273 6 43 chr15 26930153 26930314 -74450207 + L1ME4a LINE L1 5967 6121 0 1617 182 20 37 chr15 26932455 26932807 -74447714 + MLT1A1 LTR MaLR 3 348 -17 1001 178 0 0 chr15 26939849 26940012 -74440509 + FRAM SINE Alu 1 163 -3 27 0 0 0 chr15 26940419 26940446 -74440075 + GC_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr15 26940633 26940660 -74439861 + GC_rich Low_complexity Low_complexity 1 27 0 37 76 0 0 chr15 26940850 26940929 -74439592 + GC_rich Low_complexity Low_complexity 1 79 0 36 106 0 0 chr15 26941339 26941480 -74439041 + GC_rich Low_complexity Low_complexity 1 141 0 30 0 0 0 chr15 26941778 26941808 -74438713 + GC_rich Low_complexity Low_complexity 1 30 0 192 179 0 0 chr15 26942035 26942074 -74438447 + (CA)n Simple_repeat Simple_repeat 1 39 0 1486 153 102 11 chr15 26942515 26942789 -74437732 - AluJo SINE Alu -12 300 2 398 301 37 34 chr15 26944887 26945005 -74435516 - HAL1 LINE L1 -1332 1175 1059 2224 116 0 0 chr15 26945005 26945308 -74435213 - AluSx SINE Alu -9 303 1 398 301 37 34 chr15 26945308 26945541 -74434980 - HAL1 LINE L1 -1448 1059 823 749 246 107 85 chr15 26946362 26946388 -74434133 + MLT1J LTR MaLR 1 25 -486 2201 225 86 34 chr15 26946388 26946925 -74433596 - MLT1F1 LTR MaLR -2 565 1 749 246 107 85 chr15 26946925 26947308 -74433213 + MLT1J LTR MaLR 25 419 -92 2379 73 10 10 chr15 26947392 26947705 -74432816 + AluSq SINE Alu 1 313 0 2107 99 0 0 chr15 26949001 26949303 -74431218 + AluSg SINE Alu 1 302 0 365 304 99 48 chr15 26949310 26949583 -74430938 - L1MC4 LINE L1 -31 8011 7725 2240 108 0 0 chr15 26949755 26950060 -74430461 - AluSx SINE Alu -7 305 1 880 193 173 85 chr15 26950598 26950725 -74429796 + MLT1A2 LTR MaLR 3 117 -257 2089 122 0 0 chr15 26950725 26951019 -74429502 - AluSx SINE Alu -18 294 1 880 193 173 85 chr15 26951019 26951233 -74429288 + MLT1A2 LTR MaLR 117 374 0 254 281 45 34 chr15 26952507 26952596 -74427925 + LTR33 LTR ERVL 91 180 -341 310 262 158 0 chr15 26953413 26953527 -74426994 + MIR SINE MIR 20 151 -63 416 347 43 14 chr15 26954584 26954810 -74425711 + MIR SINE MIR 20 250 -12 794 257 57 21 chr15 26954818 26955098 -74425423 + L1MC4a LINE L1 5567 5856 -1952 286 23 47 0 chr15 26955281 26955324 -74425197 + (TC)n Simple_repeat Simple_repeat 2 46 0 396 0 0 0 chr15 26955324 26955368 -74425153 + (CA)n Simple_repeat Simple_repeat 1 44 0 195 162 0 0 chr15 26956618 26956655 -74423866 + (CA)n Simple_repeat Simple_repeat 2 38 0 1840 168 44 18 chr15 26957130 26957469 -74423052 + MER7A DNA MER2_type 1 346 0 480 35 0 0 chr15 26959468 26959526 -74420995 + (CA)n Simple_repeat Simple_repeat 1 58 0 2612 80 0 0 chr15 26960220 26960533 -74419988 + AluSq SINE Alu 1 313 0 686 282 116 28 chr15 26960924 26961311 -74419210 + L1MC4 LINE L1 7340 7760 -282 180 286 41 0 chr15 26961492 26961541 -74418980 - L2 LINE L2 -2912 402 352 616 288 10 25 chr15 26961637 26961835 -74418686 + MIR SINE MIR 39 233 -29 280 292 14 74 chr15 26962782 26962998 -74417523 + L1MC/D LINE L1 5624 5826 -1982 198 0 0 0 chr15 26966402 26966424 -74414097 + (GGCTG)n Simple_repeat Simple_repeat 3 24 0 30 27 0 0 chr15 26966665 26966702 -74413819 + GC_rich Low_complexity Low_complexity 1 37 0 3271 268 144 19 chr15 26969120 26970767 -74409754 + HAL1 LINE L1 84 1937 -570 282 239 266 0 chr15 26970803 26970916 -74409605 - MLT1I LTR MaLR -71 338 196 232 94 0 0 chr15 26971448 26971480 -74409041 - MLT1A1 LTR MaLR -64 301 270 837 240 151 43 chr15 26971861 26972137 -74408384 - MLT1I LTR MaLR 0 409 86 1961 164 5 67 chr15 26972137 26972292 -74408229 + MLT1A1 LTR MaLR 1 164 -201 2192 109 20 10 chr15 26972292 26972594 -74407927 + AluSx SINE Alu 1 305 -7 1961 164 5 67 chr15 26972594 26972827 -74407694 + MLT1A1 LTR MaLR 164 365 0 837 240 151 43 chr15 26972827 26972900 -74407621 - MLT1I LTR MaLR -323 86 22 740 290 111 39 chr15 26972935 26973272 -74407249 + HAL1 LINE L1 1957 2345 -162 2317 196 88 35 chr15 26973272 26973864 -74406657 + MLT1E3 LTR MaLR 1 623 -1 740 290 111 39 chr15 26973864 26974040 -74406481 + HAL1 LINE L1 2345 2507 0 1927 112 98 0 chr15 26974125 26974402 -74406119 - AluSg SINE Alu -6 304 1 320 322 96 10 chr15 26974402 26974610 -74405911 + MLT1J2 LTR MaLR 73 298 -152 200 313 160 0 chr15 26975788 26975919 -74404602 - MIR SINE MIR -83 179 28 2144 111 0 36 chr15 26977379 26977685 -74402836 + AluSx SINE Alu 3 297 -15 1005 209 171 72 chr15 26977712 26978181 -74402340 + MLT1G LTR MaLR 76 590 0 2437 89 0 13 chr15 26978199 26978513 -74402008 - AluSg SINE Alu 0 310 1 635 132 88 29 chr15 26978652 26978788 -74401733 + MLT1E3 LTR MaLR 1 144 -480 1035 246 68 14 chr15 26979405 26979698 -74400823 - MSTC LTR MaLR -119 309 1 232 321 86 18 chr15 26980038 26980145 -74400376 + L1M4 LINE L1 2115 2213 -3933 2094 126 13 0 chr15 26980145 26980446 -74400075 - AluSx SINE Alu -7 305 1 232 321 86 18 chr15 26980446 26980618 -74399903 + L1M4 LINE L1 2213 2413 -3733 2511 76 0 0 chr15 26980639 26980940 -74399581 + AluY SINE Alu 1 301 -10 189 0 0 0 chr15 26982333 26982354 -74398167 + (A)n Simple_repeat Simple_repeat 1 21 0 2338 99 0 29 chr15 26986166 26986480 -74394041 + AluSg SINE Alu 1 305 -5 367 239 72 22 chr15 26986640 26986820 -74393701 + MER115 DNA AcHobo 58 246 -447 246 32 0 0 chr15 26986887 26986918 -74393603 + (GGCTG)n Simple_repeat Simple_repeat 2 32 0 315 259 168 5 chr15 26986926 26987111 -74393410 + MER115 DNA AcHobo 401 615 -78 3134 212 32 30 chr15 26987140 26987919 -74392602 + MER21B LTR ERV1 5 785 -78 1196 241 66 6 chr15 26989170 26989489 -74391032 + MER46C DNA MER2_type 1 338 0 837 182 6 77 chr15 26990545 26990726 -74389795 - FRAM SINE Alu -5 171 4 676 266 61 18 chr15 26990817 26991095 -74389426 + L1MEc LINE L1 35 324 -6072 2132 139 0 16 chr15 26991112 26991429 -74389092 + AluSx SINE Alu 1 312 0 1590 112 21 150 chr15 26991641 26992015 -74388506 + MER7A DNA MER2_type 1 324 -22 745 277 36 29 chr15 26992080 26992495 -74388026 + L1MEc LINE L1 660 1077 -5319 240 323 24 32 chr15 26992500 26992624 -74387897 + L1MDb LINE L1 7 129 -6280 297 264 11 11 chr15 26992734 26992821 -74387700 + L1MDb LINE L1 116 202 -6204 5657 253 50 17 chr15 26993339 26994010 -74386511 + L1MDb LINE L1 780 1427 -4979 2122 153 0 0 chr15 26994010 26994318 -74386203 + AluSx SINE Alu 1 308 -4 5657 253 50 17 chr15 26994318 26994363 -74386158 + L1MDb LINE L1 1427 1469 -4937 934 110 6 28 chr15 26994363 26994545 -74385976 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 5657 253 50 17 chr15 26994545 26995237 -74385284 + L1MDb LINE L1 1469 2137 -4269 2166 132 0 0 chr15 26995237 26995532 -74384989 + AluSx SINE Alu 1 295 -17 5657 253 50 17 chr15 26995532 26995590 -74384931 + L1MDb LINE L1 2137 2192 -4214 333 0 0 0 chr15 26995590 26995627 -74384894 + (TA)n Simple_repeat Simple_repeat 1 37 0 5657 253 50 17 chr15 26995627 26997025 -74383496 + L1MDb LINE L1 2192 3735 -2671 2261 103 3 0 chr15 26997025 26997316 -74383205 - AluSg SINE Alu -18 292 1 5657 253 50 17 chr15 26997316 26998240 -74382281 + L1MDb LINE L1 3735 4627 -1779 321 211 11 11 chr15 26998234 26998329 -74382192 + L1MC/D LINE L1 5350 5444 -2364 * 1463 218 20 59 chr15 26998609 26998826 -74381695 + L1MDb LINE L1 4650 4874 -1532 1808 85 48 0 chr15 26998826 26999097 -74381424 + L1MA3 LINE L1 6020 6303 -2 1463 218 20 59 chr15 26999097 26999369 -74381152 + L1MDb LINE L1 4874 5120 -1286 4193 183 47 32 chr15 26999387 27000372 -74380149 - L1MB7 LINE L1 -23 6161 5154 2215 103 7 0 chr15 27000372 27000691 -74379830 + AluSp SINE Alu 1 313 0 4193 183 47 32 chr15 27000691 27001242 -74379279 - L1MB7 LINE L1 -1030 5154 4613 427 315 57 38 chr15 27001287 27001706 -74378815 + L1MEc LINE L1 1385 1811 -4910 5276 144 38 24 chr15 27001707 27002681 -74377840 + L1MC1 LINE L1 5346 6333 0 226 200 148 35 chr15 27002676 27002791 -74377730 + L1MEc LINE L1 1751 1878 -4662 * 736 256 76 51 chr15 27002815 27003209 -74377312 + L1MEc LINE L1 2170 2573 -4148 486 304 58 10 chr15 27003179 27003492 -74377029 + L1MEc LINE L1 2504 2831 -3709 * 1282 212 44 80 chr15 27003497 27003663 -74376858 + MLT1B LTR MaLR 1 171 -219 2178 140 0 0 chr15 27003663 27003974 -74376547 + AluSx SINE Alu 1 301 -11 1282 212 44 80 chr15 27003974 27004183 -74376338 + MLT1B LTR MaLR 171 372 -18 1870 227 118 2 chr15 27004199 27004723 -74375798 + L1MEc LINE L1 2838 3422 -3118 288 111 0 0 chr15 27004893 27004938 -74375583 + (TG)n Simple_repeat Simple_repeat 2 46 0 329 212 71 0 chr15 27006366 27006451 -74374070 - MER45C DNA AcHobo -145 808 718 487 198 10 0 chr15 27006555 27006651 -74373870 - MER45C DNA AcHobo -776 177 81 456 323 69 44 chr15 27007408 27007777 -74372744 + HERV16 LTR ERVL 492 866 -4130 1705 175 66 0 chr15 27007777 27008097 -74372424 - L1MB3 LINE L1 -7 6176 5836 456 323 69 44 chr15 27008097 27008274 -74372247 + HERV16 LTR ERVL 866 1037 -3959 251 286 36 12 chr15 27008329 27008413 -74372108 + HERV16 LTR ERVL 1007 1092 -3904 2062 326 125 10 chr15 27008575 27009691 -74370830 + HERV16 LTR ERVL 1375 2658 -2430 2286 67 13 25 chr15 27011321 27011636 -74368885 - AluY SINE Alu 0 311 1 350 382 24 14 chr15 27012123 27012330 -74368191 + MIR SINE MIR 6 214 -48 541 196 250 7 chr15 27012424 27012572 -74367949 - LTR2 LTR ERV1 0 449 266 296 312 6 81 chr15 27012568 27012741 -74367780 - LTR2 LTR ERV1 -289 160 1 * 185 253 96 72 chr15 27013565 27013648 -74366873 - MIR SINE MIR -72 190 106 329 266 82 53 chr15 27014665 27014850 -74365671 + LTR33 LTR ERVL 1 166 -355 408 257 18 9 chr15 27015049 27015162 -74365359 + LTR33A LTR ERVL 407 520 -3 390 268 63 39 chr15 27015835 27016020 -74364501 - MLT1G LTR MaLR -138 417 218 447 186 23 0 chr15 27016325 27016403 -74364118 + MER67A LTR ERV1 1 80 -463 1086 235 70 60 chr15 27016403 27016862 -74363659 + MER67B LTR ERV1 1 341 -331 1728 143 17 7 chr15 27016862 27017156 -74363365 + AluY SINE Alu 1 297 -14 1086 235 70 60 chr15 27017156 27017220 -74363301 + MER67B LTR ERV1 341 403 -269 447 255 72 18 chr15 27017230 27017434 -74363087 + MER67A LTR ERV1 289 541 -2 672 205 0 0 chr15 27018007 27018173 -74362348 + (TG)n Simple_repeat Simple_repeat 2 167 0 199 339 0 0 chr15 27021605 27021664 -74358857 - L2 LINE L2 -9 3263 3205 330 67 0 0 chr15 27023121 27023166 -74357355 + (TG)n Simple_repeat Simple_repeat 2 46 0 195 295 85 31 chr15 27023771 27023900 -74356621 - MIR SINE MIR -56 152 17 367 282 150 29 chr15 27024200 27024473 -74356048 + ERVL LTR ERVL 5038 5343 -421 1531 193 7 10 chr15 27024495 27024791 -74355730 + AluSx SINE Alu 1 295 -17 1786 244 89 21 chr15 27024791 27025195 -74355326 - L1ME3A LINE L1 -40 6130 5755 2060 105 3 59 chr15 27025195 27025518 -74355003 - AluSg SINE Alu -5 305 1 1786 244 89 21 chr15 27025518 27025553 -74354968 - L1ME3A LINE L1 -415 5755 5724 297 0 0 0 chr15 27025553 27025586 -74354935 + (CA)n Simple_repeat Simple_repeat 2 34 0 1786 244 89 21 chr15 27025586 27025796 -74354725 - L1ME3A LINE L1 -446 5724 5436 204 40 0 0 chr15 27025800 27025825 -74354696 + (TCCCC)n Simple_repeat Simple_repeat 4 28 0 316 323 120 32 chr15 27025881 27026222 -74354299 - L1M4c LINE L1 -1205 1538 937 3812 201 11 62 chr15 27026273 27026473 -74354048 - L1MB8 LINE L1 -45 6133 5925 1594 164 20 30 chr15 27026473 27026777 -74353744 - AluJb SINE Alu -11 301 1 3812 201 11 62 chr15 27026777 27027638 -74352883 - L1MB8 LINE L1 -253 5925 5122 2348 88 3 0 chr15 27027790 27028098 -74352423 - AluY SINE Alu -2 309 1 238 321 101 0 chr15 27028307 27028416 -74352105 - LTR33A LTR ERVL -16 507 388 2132 192 11 8 chr15 27028464 27028828 -74351693 - MLT1A1 LTR MaLR 0 365 1 244 231 39 108 chr15 27029043 27029173 -74351348 - LTR33A LTR ERVL -365 158 38 1740 133 0 4 chr15 27029528 27029791 -74350730 + AluSx SINE Alu 12 273 -39 279 284 88 14 chr15 27030077 27030225 -74350296 + MER103 DNA DNA 1 159 -7 1528 212 164 15 chr15 27031044 27031441 -74349080 - MLT1F1 LTR MaLR -2 565 110 31 26 0 0 chr15 27031761 27031799 -74348722 + AT_rich Low_complexity Low_complexity 1 38 0 668 148 40 0 chr15 27032036 27032137 -74348384 + FLAM_C SINE Alu 7 111 -32 2040 141 10 0 chr15 27032162 27032468 -74348053 + AluSq SINE Alu 3 311 -2 280 315 36 18 chr15 27032811 27032922 -74347599 - L2 LINE L2 0 3313 3201 630 152 128 0 chr15 27032991 27033116 -74347405 - MLT1F1 LTR MaLR -426 141 1 244 163 105 13 chr15 27033348 27033441 -74347080 + MIR SINE MIR 102 207 -55 1674 62 0 5 chr15 27034844 27035053 -74345468 - L1PA5 LINE L1 0 6154 5947 324 339 17 40 chr15 27035512 27035689 -74344832 + MIR SINE MIR 21 193 -69 1831 94 4 0 chr15 27035788 27036043 -74344478 + AluSx SINE Alu 57 312 0 928 112 0 0 chr15 27037540 27037665 -74342856 - AluSq/x SINE Alu -188 125 1 189 306 16 0 chr15 27037794 27037856 -74342665 + MIR3 SINE MIR 122 184 -24 2180 160 28 21 chr15 27038640 27039027 -74341494 + MLT1B LTR MaLR 1 390 0 381 328 73 35 chr15 27040308 27040540 -74339981 - HERV16 LTR ERVL -4211 785 545 801 338 21 68 chr15 27040840 27041325 -74339196 + HERV16 LTR ERVL 1110 1571 -3425 1024 173 26 30 chr15 27041362 27041654 -74338867 + L1MB7 LINE L1 5726 6148 -36 1646 254 98 27 chr15 27041679 27042202 -74338319 + HERV16 LTR ERVL 1712 2271 -2725 775 144 30 30 chr15 27042204 27042319 -74338202 + AluJo/FLAM SINE Alu 1 118 -184 1943 152 0 13 chr15 27042319 27042454 -74338067 + AluJb SINE Alu 1 136 -176 2211 116 3 0 chr15 27042454 27042764 -74337757 + AluSp SINE Alu 2 312 -1 1943 152 0 13 chr15 27042764 27042943 -74337578 + AluJb SINE Alu 136 311 -1 775 144 30 30 chr15 27042943 27042959 -74337562 + AluJo/FLAM SINE Alu 117 132 -170 21 57 0 0 chr15 27042977 27043012 -74337509 + AT_rich Low_complexity Low_complexity 1 35 0 1811 318 26 46 chr15 27043029 27043918 -74336603 + HERV16 LTR ERVL 2309 3091 -1905 367 331 20 67 chr15 27043940 27044194 -74336327 + HERV16 LTR ERVL 3595 3836 -1928 216 0 0 0 chr15 27044392 27044416 -74336105 + (A)n Simple_repeat Simple_repeat 1 24 0 404 318 47 25 chr15 27044421 27044639 -74335882 - L1MEc LINE L1 -3927 2482 2237 2714 142 49 0 chr15 27044860 27045268 -74335253 + MSTC LTR MaLR 1 428 0 378 347 140 0 chr15 27045291 27045484 -74335037 - L1MEc LINE L1 -4579 1984 1765 5409 110 10 22 chr15 27045808 27046368 -74334153 + L1MA5A LINE L1 5489 6037 -260 2058 121 3 10 chr15 27046368 27046673 -74333848 + AluSx SINE Alu 1 303 -9 5409 110 10 22 chr15 27046673 27046931 -74333590 + L1MA5A LINE L1 6037 6297 0 21 57 0 0 chr15 27046931 27046966 -74333555 + AT_rich Low_complexity Low_complexity 1 35 0 361 263 11 21 chr15 27047563 27047658 -74332863 + MER91A DNA MER1_type 1 94 -102 303 261 34 11 chr15 27048795 27048883 -74331638 + L2 LINE L2 3134 3223 -49 199 289 24 48 chr15 27049005 27049088 -74331433 + MIR SINE MIR 89 169 -93 1771 171 0 7 chr15 27049191 27049489 -74331032 + AluJb SINE Alu 1 296 -16 1396 227 98 102 chr15 27049695 27050233 -74330288 + MLT1F LTR MaLR 7 542 0 733 273 131 41 chr15 27051006 27051588 -74328933 - HAL1 LINE L1 0 2507 1874 2200 316 86 31 chr15 27051599 27052353 -74328168 - HAL1 LINE L1 -694 1813 955 2077 92 4 0 chr15 27052353 27052626 -74327895 - AluSx SINE Alu -38 274 1 2200 316 86 31 chr15 27052626 27053175 -74327346 - HAL1 LINE L1 -1552 955 438 329 276 0 0 chr15 27053420 27053496 -74327025 + MIR SINE MIR 119 194 -68 2476 86 0 0 chr15 27054399 27054703 -74325818 + AluSc SINE Alu 1 304 -5 1995 112 0 14 chr15 27054710 27054988 -74325533 + AluSx SINE Alu 39 312 0 2188 115 13 16 chr15 27055721 27056033 -74324488 + AluSx SINE Alu 1 311 -1 725 191 26 32 chr15 27056123 27056433 -74324088 - MLT1A1 LTR MaLR -1 364 1 2091 115 6 53 chr15 27056614 27056935 -74323586 - AluSq SINE Alu -7 306 1 362 265 66 10 chr15 27057182 27057378 -74323143 - L1MC/D LINE L1 -2322 5486 5280 414 0 0 0 chr15 27057669 27057715 -74322806 + (TG)n Simple_repeat Simple_repeat 2 47 0 1894 167 7 0 chr15 27057715 27057997 -74322524 - AluSx SINE Alu -28 284 1 1185 129 4 117 chr15 27058231 27058495 -74322026 + LTR12 LTR ERV1 1 234 -480 275 149 0 0 chr15 27058552 27058599 -74321922 + LTR12 LTR ERV1 228 274 -440 233 274 0 0 chr15 27058629 27058702 -74321819 + LTR30 LTR ERV1 552 624 -98 558 217 58 0 chr15 27058702 27058822 -74321699 + LTR12 LTR ERV1 359 485 -229 1955 117 11 3 chr15 27059233 27059516 -74321005 + AluSg SINE Alu 15 299 -11 3960 83 18 2 chr15 27059611 27060156 -74320365 - MER41A LTR ERV1 0 554 1 355 206 29 0 chr15 27061623 27061691 -74318830 - MER8 DNA MER2_type 0 239 170 * 2210 143 88 7 chr15 27061674 27062092 -74318429 + Tigger2 DNA MER2_type 2267 2718 0 568 205 93 12 chr15 27062723 27062884 -74317637 - Charlie1b DNA MER1_type -24 499 326 938 82 16 0 chr15 27062893 27063015 -74317506 + AluSp SINE Alu 2 125 -188 277 114 0 0 chr15 27063198 27063242 -74317279 - MADE1 DNA Mariner -36 44 1 214 239 0 0 chr15 27063268 27063314 -74317207 - L2 LINE L2 -13 3300 3255 1240 279 42 18 chr15 27063581 27064015 -74316506 - L1ME1 LINE L1 -5 6161 5718 640 211 35 99 chr15 27064564 27064796 -74315725 - Charlie1b DNA MER1_type -305 218 2 403 291 117 45 chr15 27064806 27064985 -74315536 + HAL1 LINE L1 818 1009 -1498 * 467 289 179 7 chr15 27064955 27065228 -74315293 + L1MC/D LINE L1 4240 4559 -1587 2063 155 0 15 chr15 27065330 27065672 -74314849 - MER1B DNA MER1_type 0 337 1 354 312 65 13 chr15 27065679 27065833 -74314688 + L1MC/D LINE L1 5173 5334 -812 225 0 171 0 chr15 27065962 27065997 -74314524 - MLT2D LTR ERVL 0 464 424 293 264 24 24 chr15 27066000 27066125 -74314396 + (CATATA)n Simple_repeat Simple_repeat 2 126 0 1642 196 32 51 chr15 27066160 27066440 -74314081 - MLT2D LTR ERVL -45 369 85 2082 105 22 0 chr15 27066440 27066707 -74313814 + AluSx SINE Alu 3 275 -37 204 40 0 0 chr15 27066710 27066735 -74313786 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1642 196 32 51 chr15 27066735 27066823 -74313698 - MLT2D LTR ERVL -331 83 4 279 272 99 27 chr15 27066961 27067127 -74313394 - MLT1J1 LTR MaLR -279 167 31 678 167 9 0 chr15 27067138 27067246 -74313275 - FLAM_C SINE Alu -20 123 15 272 178 56 56 chr15 27067265 27067355 -74313166 + L1MC/D LINE L1 5393 5482 -2326 235 250 16 0 chr15 27067634 27067698 -74312823 + MER115 DNA AcHobo 180 244 -449 2312 103 7 0 chr15 27067875 27068177 -74312344 + AluSg SINE Alu 1 304 -6 720 276 75 13 chr15 27068294 27068533 -74311988 + MIR SINE MIR 9 262 0 329 328 0 17 chr15 27069267 27069383 -74311138 + C-rich Low_complexity Low_complexity 5 118 0 424 117 0 72 chr15 27069386 27069497 -74311024 + (CCCCCT)n Simple_repeat Simple_repeat 6 108 0 22 0 0 0 chr15 27069882 27069904 -74310617 + GC_rich Low_complexity Low_complexity 1 22 0 2483 80 0 0 chr15 27071460 27071762 -74308759 - AluY SINE Alu -9 302 1 2301 92 7 0 chr15 27071909 27072204 -74308317 - AluSp SINE Alu -16 297 1 255 339 31 63 chr15 27073121 27073248 -74307273 + MIR3 SINE MIR 15 137 -71 1788 191 0 6 chr15 27073302 27073778 -74306743 - AluJb SINE Alu 0 474 1 464 230 34 39 chr15 27073828 27074006 -74306515 - L1MC5 LINE L1 -70 7891 7715 929 255 97 47 chr15 27074023 27074404 -74306117 - MLT1H LTR MaLR -43 506 107 1468 197 60 161 chr15 27074509 27074741 -74305780 - L1MC5 LINE L1 -262 7699 7445 2018 159 0 3 chr15 27074741 27075043 -74305478 - AluSx SINE Alu -9 303 3 1468 197 60 161 chr15 27075043 27075358 -74305163 - L1MC5 LINE L1 -516 7445 7100 2454 97 3 0 chr15 27075358 27075667 -74304854 - AluSx SINE Alu -2 310 1 1468 197 60 161 chr15 27075667 27076292 -74304229 - L1MC5 LINE L1 -861 7100 6645 237 244 77 51 chr15 27076568 27076724 -74303797 - L1MC4a LINE L1 -1614 6194 6035 2419 78 10 0 chr15 27076963 27077256 -74303265 - AluSx SINE Alu -14 298 3 1305 174 154 48 chr15 27077279 27077331 -74303190 - MSTD LTR MaLR -2 394 349 2111 133 3 7 chr15 27077331 27077631 -74302890 - AluSx SINE Alu -13 299 1 1305 174 154 48 chr15 27077631 27077934 -74302587 - MSTD LTR MaLR -47 349 1 1079 227 61 14 chr15 27079417 27079761 -74300760 - MER69 DNA AcHobo -1 2525 2166 866 217 28 0 chr15 27079761 27079941 -74300580 - MER58A DNA MER1_type 0 224 40 786 194 47 56 chr15 27079987 27080072 -74300449 - MER69 DNA AcHobo -381 2145 2061 2456 81 0 0 chr15 27080072 27080369 -74300152 - AluY SINE Alu -14 297 1 786 194 47 56 chr15 27080369 27080515 -74300006 - MER69 DNA AcHobo -465 2061 1916 * 800 266 56 0 chr15 27080511 27080725 -74299796 - MER69 DNA AcHobo -1591 935 710 2156 178 116 65 chr15 27081341 27081868 -74298653 + MLT2B3 LTR ERVL 1 554 0 468 286 86 45 chr15 27083411 27083638 -74296883 + MIR SINE MIR 17 261 -1 357 24 0 0 chr15 27084974 27085016 -74295505 + (CA)n Simple_repeat Simple_repeat 2 43 0 1995 125 12 64 chr15 27085889 27086218 -74294303 + AluSx SINE Alu 1 312 0 304 330 124 29 chr15 27086243 27086354 -74294167 + HAL1 LINE L1 880 979 -1528 1282 164 122 73 chr15 27086354 27086781 -74293740 - LTR7 LTR ERV1 -2 448 1 304 330 124 29 chr15 27086781 27087053 -74293468 + HAL1 LINE L1 979 1302 -1205 217 204 37 0 chr15 27087469 27087523 -74292998 + GA-rich Low_complexity Low_complexity 4 59 0 266 328 59 8 chr15 27087629 27087748 -74292773 - MIR SINE MIR -131 131 7 2556 77 0 0 chr15 27088290 27088601 -74291920 + AluY SINE Alu 1 311 0 554 380 123 0 chr15 27088603 27088935 -74291586 + L1MC4a LINE L1 4143 4515 -1631 2476 71 7 7 chr15 27088954 27089263 -74291258 - AluSc SINE Alu 0 309 1 312 285 166 40 chr15 27089285 27089436 -74291085 + L1MC4a LINE L1 5550 5719 -402 430 239 29 116 chr15 27089479 27089756 -74290765 + L1MC4a LINE L1 5707 5963 -158 2130 96 36 0 chr15 27089773 27090054 -74290467 - AluSx SINE Alu -17 295 5 29 70 0 0 chr15 27090204 27090261 -74290260 + AT_rich Low_complexity Low_complexity 1 57 0 645 178 8 0 chr15 27090261 27090379 -74290142 - FLAM_C SINE Alu -14 119 1 852 268 105 32 chr15 27090457 27090983 -74289538 - HAL1 LINE L1 -85 2422 1859 2467 71 10 0 chr15 27091326 27091773 -74288748 + AluY SINE Alu 1 450 0 287 360 0 0 chr15 27092094 27092247 -74288274 + CT-rich Low_complexity Low_complexity 2 154 0 2919 13 0 0 chr15 27092631 27092940 -74287581 + AluYb8 SINE Alu 1 309 -9 1366 237 59 3 chr15 27093464 27093785 -74286736 - MER70A LTR ERVL -130 342 4 1018 217 5 0 chr15 27094683 27094886 -74285635 - MLT1B LTR MaLR -11 379 176 1108 146 29 0 chr15 27094886 27095057 -74285464 - FRAM SINE Alu -3 173 1 779 213 30 0 chr15 27095061 27095230 -74285291 - MLT1B LTR MaLR -213 177 4 1308 204 19 94 chr15 27096585 27097001 -74283520 - MLT1B LTR MaLR -5 385 1 260 212 24 0 chr15 27097168 27097253 -74283268 + (CATAT)n Simple_repeat Simple_repeat 4 90 0 606 195 29 6 chr15 27097268 27097442 -74283079 + (CATAT)n Simple_repeat Simple_repeat 1 178 0 558 227 80 25 chr15 27097997 27098160 -74282361 - MER69A DNA AcHobo -5 172 1 365 216 21 0 chr15 27099210 27099307 -74281214 + (CATAT)n Simple_repeat Simple_repeat 5 103 0 2289 111 0 0 chr15 27099507 27099804 -74280717 - AluSx SINE Alu -15 297 1 25 0 0 0 chr15 27100034 27100059 -74280462 + AT_rich Low_complexity Low_complexity 1 25 0 2125 116 17 0 chr15 27100720 27101012 -74279509 - AluSg SINE Alu -13 297 1 216 279 18 6 chr15 27101328 27101439 -74279082 - MER5A DNA MER1_type 0 189 12 388 272 73 15 chr15 27102352 27102488 -74278033 + MER69 DNA AcHobo 6 149 -2377 343 194 15 0 chr15 27102505 27102572 -74277949 - MLT1G1 LTR MaLR 0 595 528 4906 229 47 36 chr15 27102578 27103621 -74276900 + L1MDb LINE L1 8 1069 -5340 2150 147 0 10 chr15 27103621 27103934 -74276587 - AluSx SINE Alu -2 310 1 4906 229 47 36 chr15 27103934 27104203 -74276318 + L1MDb LINE L1 1069 1334 -5075 2335 126 0 0 chr15 27104213 27104523 -74275998 + AluSg SINE Alu 1 310 0 656 291 12 8 chr15 27104523 27104764 -74275757 + L1MDb LINE L1 2776 3017 -3389 1320 169 22 158 chr15 27105005 27105309 -74275212 - Zaphod DNA AcHobo -238 3793 3449 213 39 0 0 chr15 27105309 27105335 -74275186 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 1320 169 22 158 chr15 27105335 27105358 -74275163 - Zaphod DNA AcHobo -582 3449 3425 1821 118 19 23 chr15 27105358 27105620 -74274901 - AluSx SINE Alu -51 261 1 1320 169 22 158 chr15 27105620 27105860 -74274661 - Zaphod DNA AcHobo -606 3425 3284 205 53 70 18 chr15 27106036 27106093 -74274428 + (TA)n Simple_repeat Simple_repeat 1 60 0 * 309 231 70 70 chr15 27106060 27106240 -74274281 + L1MC4 LINE L1 1933 6988 -1334 2278 69 0 10 chr15 27106253 27106558 -74273963 - AluY SINE Alu -9 302 1 245 325 83 17 chr15 27106564 27106684 -74273837 - L1MEd LINE L1 -5496 623 496 604 191 48 38 chr15 27106686 27106924 -74273597 + MLT1E3 LTR MaLR 1 285 -369 2853 106 27 12 chr15 27106970 27107384 -74273137 + MSTA LTR MaLR 1 420 -8 1017 226 41 79 chr15 27107391 27107616 -74272905 + MLT1E3 LTR MaLR 292 501 -123 2261 93 3 0 chr15 27107616 27107917 -74272604 - AluSp SINE Alu -11 302 1 1017 226 41 79 chr15 27107917 27108031 -74272490 + MLT1E3 LTR MaLR 501 618 -6 727 216 117 47 chr15 27109065 27109450 -74271071 + MLT1G3 LTR MaLR 68 483 -107 3910 162 33 7 chr15 27109490 27110220 -74270301 - L1MD1 LINE L1 0 6242 5494 2790 144 44 6 chr15 27110228 27110707 -74269814 - L1MB2 LINE L1 -4 6167 5671 198 0 0 0 chr15 27110715 27110737 -74269784 + (TA)n Simple_repeat Simple_repeat 2 23 0 1999 109 0 7 chr15 27110740 27111024 -74269497 - AluSq SINE Alu -31 282 1 5928 214 36 48 chr15 27111037 27111229 -74269292 - L1MD1 LINE L1 -1949 4197 4004 1876 134 7 0 chr15 27111229 27111506 -74269015 - AluSx SINE Alu -17 295 17 5928 214 36 48 chr15 27111506 27112961 -74267560 - L1MD1 LINE L1 -2142 4004 2571 2576 125 72 5 chr15 27112961 27113362 -74267159 - MSTA LTR MaLR 0 428 1 5928 214 36 48 chr15 27113362 27113540 -74266981 - L1MD1 LINE L1 -3575 2571 2392 5361 135 5 24 chr15 27113540 27114703 -74265818 + L1PA16 LINE L1 5015 6160 -6 297 230 95 32 chr15 27114852 27114978 -74265543 - L1M3d LINE L1 -5756 135 2 * 3239 223 115 91 chr15 27114970 27115452 -74265069 - L1MB2 LINE L1 -743 5403 4934 1711 166 3 19 chr15 27115452 27115765 -74264756 - AluJo SINE Alu -2 310 3 3239 223 115 91 chr15 27115765 27115987 -74264534 - L1MB2 LINE L1 -1212 4934 4719 1492 156 26 22 chr15 27115987 27116257 -74264264 - AluJo SINE Alu -30 282 12 3239 223 115 91 chr15 27116257 27116361 -74264160 - L1MB2 LINE L1 -1427 4719 4619 424 60 0 230 chr15 27116361 27116408 -74264113 + MADE1 DNA Mariner 4 18 -62 9727 62 6 76 chr15 27116408 27117898 -74262623 - SVA Other Other 0 1386 1 424 60 0 230 chr15 27117898 27117950 -74262571 + MADE1 DNA Mariner 18 80 0 3239 223 115 91 chr15 27117950 27118662 -74261859 - L1MB2 LINE L1 -1527 4619 3926 2194 149 86 8 chr15 27118662 27119059 -74261462 + MSTA LTR MaLR 1 428 0 3239 223 115 91 chr15 27119059 27119109 -74261412 - L1MB2 LINE L1 -2220 3926 3879 704 187 8 0 chr15 27119109 27119232 -74261289 + FLAM_C SINE Alu 6 129 -14 3239 223 115 91 chr15 27119232 27120196 -74260325 - L1MB2 LINE L1 -2267 3879 2751 1078 215 106 8 chr15 27120203 27120459 -74260062 + AluJo SINE Alu 9 289 -23 438 271 8 0 chr15 27120464 27120586 -74259935 - L1MB2 LINE L1 -3389 2757 2635 496 250 45 82 chr15 27120730 27120950 -74259571 - L1M4 LINE L1 -1986 4160 3949 207 0 0 0 chr15 27121040 27121063 -74259458 + (T)n Simple_repeat Simple_repeat 1 23 0 397 279 50 95 chr15 27121089 27121278 -74259243 - L1M4 LINE L1 -2230 3916 3747 1093 142 296 9 chr15 27121278 27121511 -74259010 - AluYa5 SINE Alu -1 300 1 397 279 50 95 chr15 27121511 27121658 -74258863 - L1M4 LINE L1 -2399 3747 3595 202 307 23 23 chr15 27122411 27122499 -74258022 - L2 LINE L2 -1323 1991 1904 975 260 157 34 chr15 27122508 27123074 -74257447 + L2 LINE L2 2369 3088 -225 1833 49 4 0 chr15 27123074 27123300 -74257221 - AluY SINE Alu -4 307 81 975 260 157 34 chr15 27123300 27123549 -74256972 + L2 LINE L2 3088 3305 -8 201 337 34 11 chr15 27125842 27125931 -74254590 + MIR3 SINE MIR 107 197 -11 3294 116 65 35 chr15 27126569 27126984 -74253537 + MER41C LTR ERV1 2 438 -116 2330 83 0 0 chr15 27126984 27127285 -74253236 - AluY SINE Alu -10 301 1 3294 116 65 35 chr15 27127285 27127406 -74253115 + MER41C LTR ERV1 438 554 0 443 294 101 24 chr15 27128161 27128409 -74252112 + L1ME3A LINE L1 5618 5884 -286 1651 143 52 11 chr15 27128418 27128705 -74251816 + AluJb SINE Alu 1 299 -13 4288 147 20 33 chr15 27128801 27129410 -74251111 - MER4E LTR ERV1 0 779 181 2196 108 3 0 chr15 27129410 27129717 -74250804 - AluSx SINE Alu -4 308 1 4288 147 20 33 chr15 27129717 27129896 -74250625 - MER4E LTR ERV1 -598 181 1 207 204 0 0 chr15 27129908 27129952 -74250569 + CT-rich Low_complexity Low_complexity 2 45 0 5004 88 44 0 chr15 27130542 27131204 -74249317 - LTR8 LTR ERV1 0 691 1 866 256 75 17 chr15 27131350 27131643 -74248878 - MER5C DNA MER1_type -8 316 7 4244 127 116 83 chr15 27131765 27132009 -74248512 - MER4D LTR ERV1 0 872 638 1877 148 3 0 chr15 27132009 27132299 -74248222 + AluSx SINE Alu 1 291 -21 4244 127 116 83 chr15 27132299 27132690 -74247831 - MER4D LTR ERV1 -234 638 200 1764 159 3 3 chr15 27132690 27132973 -74247548 + AluJb SINE Alu 1 283 -29 4244 127 116 83 chr15 27132973 27133180 -74247341 - MER4D LTR ERV1 -672 200 1 3768 106 23 25 chr15 27134395 27134900 -74245621 - MER61E LTR ERV1 0 569 64 2159 120 3 0 chr15 27134900 27135208 -74245313 + AluSg SINE Alu 2 310 0 3768 106 23 25 chr15 27135208 27135268 -74245253 - MER61E LTR ERV1 -505 64 5 470 143 95 0 chr15 27135357 27135441 -74245080 - MER103 DNA DNA -44 122 31 2408 38 20 0 chr15 27135814 27136106 -74244415 + AluY SINE Alu 1 298 -13 202 0 91 0 chr15 27137608 27137641 -74242880 + T-rich Low_complexity Low_complexity 5 40 0 314 260 197 16 chr15 27138033 27138160 -74242361 + MIR3 SINE MIR 7 156 -52 239 195 0 91 chr15 27138358 27138435 -74242086 - L2 LINE L2 -9 3263 3194 2558 153 11 68 chr15 27138436 27138631 -74241890 - LTR54 LTR ERV1 0 510 305 2204 94 3 3 chr15 27138631 27138928 -74241593 - AluSp SINE Alu -16 297 1 2558 153 11 68 chr15 27138928 27139273 -74241248 - LTR54 LTR ERV1 -205 305 1 1764 164 55 7 chr15 27139273 27139583 -74240938 - MER89-int LTR ERV1 -393 7144 6820 1110 101 5 101 chr15 27139595 27139812 -74240709 - MER30 DNA MER1_type -33 197 2 464 293 107 19 chr15 27139814 27140029 -74240492 - MER89-int LTR ERV1 -712 6825 6592 338 197 0 0 chr15 27140084 27140145 -74240376 - MER89-int LTR ERV1 -697 4174 4114 4813 193 108 65 chr15 27140190 27140617 -74239904 - MER89-int LTR ERV1 -514 5817 5410 2283 92 0 0 chr15 27140617 27140920 -74239601 + AluSp SINE Alu 1 303 -10 4813 193 108 65 chr15 27140920 27141175 -74239346 - MER89-int LTR ERV1 -921 5410 5168 1562 173 20 13 chr15 27141175 27141476 -74239045 - AluJb SINE Alu -9 303 1 4813 193 108 65 chr15 27141476 27141922 -74238599 - MER89-int LTR ERV1 -1163 5168 4743 1665 127 31 55 chr15 27141922 27142263 -74238258 + AluSx SINE Alu 1 334 0 4813 193 108 65 chr15 27142263 27143327 -74237194 - MER89-int LTR ERV1 -1588 4743 2391 523 178 207 7 chr15 27143338 27143473 -74237048 - MER34C LTR ERV1 -255 330 169 706 190 0 36 chr15 27143558 27143695 -74236826 - AluJo SINE Alu -178 134 3 321 226 36 24 chr15 27143702 27143786 -74236735 - MER89-int LTR ERV1 -3352 2911 2827 722 209 62 67 chr15 27143829 27144226 -74236295 - MER89-int LTR ERV1 -2696 2427 1719 1738 219 62 68 chr15 27144240 27144504 -74236017 - MER89-int LTR ERV1 -2946 2278 2014 1834 136 0 34 chr15 27144504 27144822 -74235699 + AluSx SINE Alu 1 308 0 2304 141 34 69 chr15 27144832 27145226 -74235295 - MSTB1 LTR MaLR 0 432 54 2027 105 0 43 chr15 27145226 27145551 -74234970 - AluSx SINE Alu -1 311 1 2304 141 34 69 chr15 27145551 27145604 -74234917 - MSTB1 LTR MaLR -378 54 1 1738 219 62 68 chr15 27145604 27146403 -74234118 - MER89-int LTR ERV1 -3219 2005 1193 307 247 0 14 chr15 27146456 27146529 -74233992 + MER57-int LTR ERV1 548 619 -6918 325 279 110 41 chr15 27146609 27146828 -74233693 - MER34C LTR ERV1 -192 393 160 186 43 0 0 chr15 27146914 27146937 -74233584 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 822 153 0 0 chr15 27146942 27147060 -74233461 - FLAM_C SINE Alu -15 118 1 262 281 42 13 chr15 27147060 27147162 -74233359 - MER89-int LTR ERV1 -3220 2726 829 317 239 53 62 chr15 27147655 27147768 -74232753 - MER89-int LTR ERV1 -5432 1369 1258 272 228 17 173 chr15 27147992 27148281 -74232240 - MER89-int LTR ERV1 -6761 776 533 700 281 106 33 chr15 27148400 27148702 -74231819 - MER89-int LTR ERV1 -4079 2252 1929 1531 145 71 74 chr15 27148732 27149069 -74231452 - LTR54 LTR ERV1 0 510 175 2463 144 58 5 chr15 27149674 27150084 -74230437 - MSTB1 LTR MaLR 0 432 1 33 0 0 0 chr15 27150185 27150218 -74230303 + AT_rich Low_complexity Low_complexity 1 33 0 301 134 0 45 chr15 27150218 27150285 -74230236 - L1MA8 LINE L1 -3 6288 6225 3058 142 21 56 chr15 27150467 27150622 -74229899 - MER34C LTR ERV1 -2 583 424 2088 92 27 14 chr15 27150622 27150917 -74229604 - AluSp SINE Alu -14 299 1 3058 142 21 56 chr15 27150917 27151365 -74229156 - MER34C LTR ERV1 -161 424 1 267 182 182 0 chr15 27151426 27151481 -74229040 - MIR3 SINE MIR -52 156 92 190 236 138 49 chr15 27151675 27151798 -74228723 + L2 LINE L2 3094 3227 -86 1593 139 66 0 chr15 27151936 27152209 -74228312 - AluSx SINE Alu -9 303 13 310 146 0 18 chr15 27152211 27152266 -74228255 - AluSq/x SINE Alu -164 139 86 1171 149 33 14 chr15 27152268 27152482 -74228039 - AluSx SINE Alu -94 218 1 2672 100 11 0 chr15 27152608 27152968 -74227553 - THE1B LTR MaLR 0 364 1 2925 168 163 7 chr15 27154032 27154609 -74225912 - Tigger7 DNA MER2_type -1820 667 1 3805 147 11 72 chr15 27154637 27155373 -74225148 - LTR8 LTR ERV1 0 691 1 189 226 43 32 chr15 27155653 27155716 -74224805 - MIR SINE MIR -97 165 103 359 179 15 0 chr15 27156039 27156106 -74224415 - MER116 DNA Mariner 0 80 13 860 227 23 0 chr15 27156739 27156911 -74223610 - MER45A DNA AcHobo -2 176 1 201 301 41 0 chr15 27157596 27157669 -74222852 + MIR SINE MIR 45 120 -88 2138 115 0 11 chr15 27158640 27158955 -74221566 - AluSx SINE Alu 0 312 1 362 292 26 60 chr15 27159281 27159477 -74221044 - L1M4 LINE L1 -3467 2679 2491 2202 122 0 3 chr15 27159477 27159788 -74220733 - AluSx SINE Alu -2 310 1 362 292 26 60 chr15 27159788 27159824 -74220697 - L1M4 LINE L1 -3655 2491 2455 24 0 0 0 chr15 27159856 27159880 -74220641 + AT_rich Low_complexity Low_complexity 1 24 0 2911 10 0 0 chr15 27159880 27160188 -74220333 - AluYa5 SINE Alu -3 308 1 11508 212 60 61 chr15 27160208 27160429 -74220092 - L1MC2 LINE L1 -15 6609 6389 2337 104 0 13 chr15 27160429 27160745 -74219776 - AluSx SINE Alu 0 312 1 11508 212 60 61 chr15 27160745 27160962 -74219559 - L1MC2 LINE L1 -235 6389 6173 2033 148 0 3 chr15 27160962 27161265 -74219256 - AluSx SINE Alu -10 302 1 11508 212 60 61 chr15 27161265 27161329 -74219192 - L1MC2 LINE L1 -451 6173 6110 1755 150 0 4 chr15 27161329 27161606 -74218915 - AluSx SINE Alu 0 305 30 11508 212 60 61 chr15 27161606 27164388 -74216133 - L1MC2 LINE L1 -514 6110 3326 2142 121 7 0 chr15 27164388 27164685 -74215836 - AluSg1 SINE Alu -5 304 6 11508 212 60 61 chr15 27164685 27166362 -74214159 - L1MC2 LINE L1 -3298 3326 1648 2373 80 0 3 chr15 27166362 27166679 -74213842 - AluSp SINE Alu 0 316 1 11508 212 60 61 chr15 27166679 27166703 -74213818 - L1MC2 LINE L1 -4976 1648 1625 1222 167 32 137 chr15 27166703 27167111 -74213410 + MLT1A1 LTR MaLR 1 365 0 11508 212 60 61 chr15 27167111 27167346 -74213175 - L1MC2 LINE L1 -4999 1625 1391 2175 103 13 22 chr15 27167346 27167658 -74212863 - AluSx SINE Alu -3 309 1 11508 212 60 61 chr15 27167658 27167937 -74212584 - L1MC2 LINE L1 -5233 1391 1113 306 0 0 0 chr15 27167937 27167971 -74212550 + (TG)n Simple_repeat Simple_repeat 2 35 0 2201 123 0 10 chr15 27167972 27168137 -74212384 - AluSx SINE Alu -13 299 137 2332 95 0 0 chr15 27168137 27168433 -74212088 - AluSq SINE Alu -17 296 1 2201 123 0 10 chr15 27168433 27168569 -74211952 - AluSx SINE Alu -175 137 1 11508 212 60 61 chr15 27168569 27168999 -74211522 - L1MC2 LINE L1 -5511 1113 684 1887 138 22 0 chr15 27168999 27169310 -74211211 - AluSq SINE Alu 0 318 2 11508 212 60 61 chr15 27169310 27169508 -74211013 - L1MC2 LINE L1 -5940 684 487 1854 188 34 11 chr15 27169508 27169865 -74210656 + MLT1A1 LTR MaLR 1 365 0 11508 212 60 61 chr15 27169865 27170330 -74210191 - L1MC2 LINE L1 -6137 487 2 2071 124 0 10 chr15 27170375 27170665 -74209856 - AluSx SINE Alu -25 287 1 554 313 86 4 chr15 27170725 27171003 -74209518 - L1MEc LINE L1 -4579 1817 1517 1124 165 0 0 chr15 27171123 27171299 -74209222 + AluJo SINE Alu 119 294 -18 453 316 93 44 chr15 27171808 27172172 -74208349 + L2 LINE L2 2932 3313 0 1338 174 113 43 chr15 27172768 27172912 -74207609 - AluJo SINE Alu 0 302 170 2296 92 3 10 chr15 27172912 27173218 -74207303 - AluSg SINE Alu -6 304 1 1338 174 113 43 chr15 27173218 27173355 -74207166 - AluJo SINE Alu -132 170 1 565 284 97 40 chr15 27173700 27174176 -74206345 - HAL1 LINE L1 -1191 1316 814 1684 145 55 3 chr15 27175014 27175324 -74205197 + L1MA7 LINE L1 5960 6285 -6 2289 102 0 0 chr15 27175392 27175709 -74204812 + AluSx SINE Alu 1 317 0 2925 167 33 0 chr15 27175818 27176332 -74204189 - L1MB3 LINE L1 -101 6082 5552 2239 107 3 19 chr15 27176731 27177048 -74203473 - AluSx SINE Alu 0 312 1 4689 212 49 72 chr15 27177472 27178800 -74201721 + L1MC5 LINE L1 1 1297 -5245 3467 220 33 20 chr15 27178822 27178863 -74201658 + L1MC5 LINE L1 1239 1278 -5368 1612 142 9 99 chr15 27178863 27179195 -74201326 + AluJo SINE Alu 1 302 0 3467 220 33 20 chr15 27179195 27180208 -74200313 + L1MC5 LINE L1 1278 2397 -4249 925 145 0 0 chr15 27180210 27180341 -74200180 + AluSq/x SINE Alu 1 131 -181 513 273 32 18 chr15 27180459 27180679 -74199842 - L1MEc LINE L1 -4849 1547 1325 * 2345 73 22 3 chr15 27180677 27180994 -74199527 + L1PA13 LINE L1 5725 6047 -116 2500 116 108 28 chr15 27180994 27181427 -74199094 + LTR12 LTR ERV1 1 468 -246 446 209 69 0 chr15 27181457 27181571 -74198950 + L1PA13 LINE L1 6041 6161 -2 737 176 25 6 chr15 27182223 27182382 -74198139 + MER103 DNA DNA 3 164 -2 1890 110 24 0 chr15 27182669 27182923 -74197598 - AluSp SINE Alu -53 260 1 316 200 24 0 chr15 27184200 27184285 -74196236 + GA-rich Low_complexity Low_complexity 2 88 0 2250 106 0 10 chr15 27185409 27185710 -74194811 - AluSx SINE Alu -14 298 1 224 146 0 21 chr15 27185712 27185760 -74194761 + (TTTTC)n Simple_repeat Simple_repeat 2 48 0 518 68 0 0 chr15 27185761 27185835 -74194686 - Alu SINE Alu 0 310 237 1971 102 0 0 chr15 27185938 27186192 -74194329 + AluSx SINE Alu 55 308 -4 3050 218 39 18 chr15 27186197 27187037 -74193484 + L1MC5 LINE L1 3340 4197 -2447 1952 248 107 89 chr15 27187045 27187607 -74192914 + L1MC5 LINE L1 5923 6473 -1986 2288 108 10 0 chr15 27187607 27187912 -74192609 + AluSq SINE Alu 1 308 -5 1952 248 107 89 chr15 27187912 27188569 -74191952 + L1MC5 LINE L1 6473 7117 -1342 366 42 0 0 chr15 27188569 27188617 -74191904 + (CA)n Simple_repeat Simple_repeat 1 48 0 1952 248 107 89 chr15 27188617 27189149 -74191372 + L1MC5 LINE L1 7117 7682 -777 2555 65 0 3 chr15 27189149 27189456 -74191065 + AluY SINE Alu 1 306 -5 1952 248 107 89 chr15 27189456 27189657 -74190864 + L1MC5 LINE L1 7682 7878 -581 2303 101 0 0 chr15 27190202 27190498 -74190023 - AluSx SINE Alu -2 310 15 789 219 193 0 chr15 27190504 27190742 -74189779 - MER33 DNA MER1_type -40 284 1 223 193 70 18 chr15 27191472 27191529 -74188992 + MIR SINE MIR 89 148 -114 242 232 347 0 chr15 27193035 27193130 -74187391 + L1ME LINE L1 5530 5657 -464 231 303 0 0 chr15 27193189 27193265 -74187256 + L1ME LINE L1 5734 5809 -361 436 135 0 0 chr15 27193523 27193597 -74186924 - L1MA4 LINE L1 -6 6294 6221 2277 92 16 3 chr15 27193668 27193972 -74186549 + AluSc SINE Alu 1 308 -1 201 94 0 0 chr15 27194624 27194656 -74185865 + (TG)n Simple_repeat Simple_repeat 2 33 0 2005 95 40 18 chr15 27195615 27195889 -74184632 - AluSx SINE Alu -32 280 1 1113 193 3 134 chr15 27195913 27196294 -74184227 - MER33 DNA MER1_type -4 320 1 296 242 82 87 chr15 27196400 27196619 -74183902 - L1ME LINE L1 -302 5819 5602 403 186 20 10 chr15 27197860 27197962 -74182559 + CT-rich Low_complexity Low_complexity 3 105 0 2282 118 0 6 chr15 27197966 27198281 -74182240 - AluSq SINE Alu 0 313 1 2375 79 0 7 chr15 27198329 27198640 -74181881 - AluSx SINE Alu 0 312 1 4669 186 27 21 chr15 27198657 27200138 -74180383 - L1MB5 LINE L1 -8 6166 4680 2158 128 3 3 chr15 27200140 27200446 -74180075 + AluSx SINE Alu 1 306 -6 451 226 182 13 chr15 27200601 27200760 -74179761 - L1MB5 LINE L1 -1729 4417 4232 2465 101 0 0 chr15 27200763 27201071 -74179450 - AluSx SINE Alu -4 308 1 698 293 76 12 chr15 27201096 27201470 -74179051 - L1ME3A LINE L1 -192 5972 5571 207 0 0 0 chr15 27201919 27201942 -74178579 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 216 0 0 0 chr15 27202197 27202221 -74178300 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 442 339 41 9 chr15 27203050 27203271 -74177250 - MIR SINE MIR -34 228 1 2268 126 0 0 chr15 27203384 27203693 -74176828 - AluSg SINE Alu -1 309 1 338 265 29 29 chr15 27204231 27204367 -74176154 - MER69A DNA AcHobo -14 163 28 513 169 169 14 chr15 27204905 27205047 -74175474 - MER96B DNA MER1_type? -241 176 13 3592 126 60 27 chr15 27205399 27205996 -74174525 - LTR12 LTR ERV1 -97 617 1 4010 166 102 20 chr15 27206039 27206497 -74174024 - L1MB3 LINE L1 0 6183 5764 2394 75 0 31 chr15 27206497 27206818 -74173703 + AluY SINE Alu 1 311 0 4010 166 102 20 chr15 27206818 27207268 -74173253 - L1MB3 LINE L1 -419 5764 5201 305 309 73 12 chr15 27208880 27209045 -74171476 - L1ME4a LINE L1 -3 6118 5944 2126 92 3 49 chr15 27209062 27209389 -74171132 + AluSx SINE Alu 1 312 0 2262 158 92 15 chr15 27209402 27209859 -74170662 + L1MB7 LINE L1 5693 6184 0 188 340 11 64 chr15 27210101 27210195 -74170326 - MIR SINE MIR -45 217 129 319 264 56 0 chr15 27211115 27211240 -74169281 + L2 LINE L2 1707 1838 -1476 195 286 0 0 chr15 27211593 27211635 -74168886 - MIR SINE MIR -115 147 106 186 254 45 0 chr15 27212468 27212535 -74167986 - L2 LINE L2 -247 3066 2997 351 230 0 66 chr15 27213295 27213447 -74167074 + G-rich Low_complexity Low_complexity 3 144 0 3183 219 109 16 chr15 27213476 27214351 -74166170 - L1MC4 LINE L1 -432 7610 6655 1314 241 92 50 chr15 27214356 27214857 -74165664 + MLT1F LTR MaLR 21 542 0 1300 226 80 12 chr15 27214863 27215199 -74165322 - L1MC4 LINE L1 -1340 6702 6344 390 150 28 39 chr15 27216138 27216318 -74164203 + (CA)n Simple_repeat Simple_repeat 1 178 0 1479 242 38 10 chr15 27218231 27218615 -74161906 + L1MB8 LINE L1 89 553 -6302 * 8233 220 52 20 chr15 27218612 27222077 -74158444 + L1MB8 LINE L1 3110 6465 -524 297 0 0 0 chr15 27222077 27222110 -74158411 + (TC)n Simple_repeat Simple_repeat 2 34 0 * 351 0 0 0 chr15 27222109 27222148 -74158373 + (TA)n Simple_repeat Simple_repeat 2 40 0 8233 220 52 20 chr15 27222110 27222149 -74158372 + L1MB8 LINE L1 6465 6501 -488 2073 124 0 0 chr15 27222149 27222447 -74158074 - AluSx SINE Alu -14 298 1 8233 220 52 20 chr15 27222447 27222504 -74158017 + L1MB8 LINE L1 6501 6977 -12 193 187 11 66 chr15 27222513 27222604 -74157917 + GA-rich Low_complexity Low_complexity 3 88 0 1397 180 0 31 chr15 27223280 27223541 -74156980 + AluJb SINE Alu 13 265 -47 802 152 5 105 chr15 27224973 27225142 -74155379 - MER53 DNA DNA 0 189 43 2025 177 11 30 chr15 27225142 27225359 -74155162 - MLT1A1 LTR MaLR 0 365 156 2193 103 3 10 chr15 27225359 27225669 -74154852 - AluSq SINE Alu -5 308 1 2025 177 11 30 chr15 27225669 27225823 -74154698 - MLT1A1 LTR MaLR -209 156 1 802 152 5 105 chr15 27225823 27225863 -74154658 - MER53 DNA DNA -146 43 1 248 338 149 14 chr15 27226457 27226605 -74153916 - MIR SINE MIR -1 261 94 2814 181 68 10 chr15 27227096 27227687 -74152834 - L1MD1 LINE L1 0 6242 5618 206 241 19 19 chr15 27229262 27229316 -74151205 + L2 LINE L2 3214 3267 -5 201 303 117 56 chr15 27229953 27230115 -74150406 - MIR SINE MIR -59 203 32 1893 147 26 10 chr15 27230375 27230681 -74149840 + AluJb SINE Alu 1 311 -1 2234 102 0 9 chr15 27232140 27232455 -74148066 + AluSq SINE Alu 1 312 -1 348 217 15 31 chr15 27233964 27234231 -74146290 + (TG)n Simple_repeat Simple_repeat 1 262 0 1756 177 0 3 chr15 27234421 27234726 -74145795 + AluJo SINE Alu 1 304 -8 2015 118 10 14 chr15 27235032 27235329 -74145192 - AluSx SINE Alu -16 296 1 1552 158 67 64 chr15 27236038 27236412 -74144109 - THE1C LTR MaLR 0 375 1 2579 76 12 3 chr15 27236583 27236927 -74143594 - L1PA13 LINE L1 -12 6151 5805 312 317 19 0 chr15 27237056 27237160 -74143361 - HAL1 LINE L1 -711 1796 1691 591 143 0 0 chr15 27237298 27237382 -74143139 - AluS SINE Alu -228 85 2 749 158 0 0 chr15 27237397 27237524 -74142997 - L1M4 LINE L1 -1117 5029 4903 908 339 128 17 chr15 27237665 27238378 -74142143 - L2 LINE L2 -564 2750 1959 264 325 17 8 chr15 27239085 27239202 -74141319 + (TG)n Simple_repeat Simple_repeat 1 118 0 227 302 16 0 chr15 27239370 27239433 -74141088 + GA-rich Low_complexity Low_complexity 3 66 0 1684 158 4 0 chr15 27241047 27241326 -74139195 - AluJb SINE Alu -12 300 21 240 35 0 0 chr15 27241585 27241614 -74138907 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1902 129 11 0 chr15 27241617 27241895 -74138626 - AluSx SINE Alu -31 281 1 465 270 131 42 chr15 27244847 27245026 -74135495 - L1M4 LINE L1 -2673 3473 3311 2096 122 0 26 chr15 27245026 27245338 -74135183 - AluSx SINE Alu -8 304 1 465 270 131 42 chr15 27245338 27245822 -74134699 - L1M4 LINE L1 -2835 3311 2751 22 0 0 0 chr15 27246019 27246041 -74134480 + AT_rich Low_complexity Low_complexity 1 22 0 2188 60 4 0 chr15 27246337 27246641 -74133880 + AluY SINE Alu 1 305 0 229 328 92 8 chr15 27246715 27246846 -74133675 + MIR SINE MIR 70 211 -51 211 200 0 0 chr15 27247608 27247643 -74132878 + polypurine Low_complexity Low_complexity 1 35 0 880 128 44 61 chr15 27248199 27248379 -74132142 - L1MCa LINE L1 -5736 690 514 2217 69 17 3 chr15 27248379 27248669 -74131852 + AluY SINE Alu 1 294 -17 282 277 71 19 chr15 27248905 27249060 -74131461 - L1ME3A LINE L1 -15 6155 5993 190 293 67 0 chr15 27249143 27249218 -74131303 + L2 LINE L2 3137 3216 -56 550 350 35 0 chr15 27249758 27249958 -74130563 - MIR SINE MIR -28 234 28 711 271 30 48 chr15 27250513 27250828 -74129693 + L1MEc LINE L1 1426 1747 -829 31 26 0 0 chr15 27251017 27251055 -74129466 + AT_rich Low_complexity Low_complexity 1 38 0 1926 115 4 4 chr15 27251087 27251394 -74129127 - AluSx SINE Alu 0 312 6 227 250 140 30 chr15 27253183 27253283 -74127238 + MER5A DNA MER1_type 74 184 -5 388 200 0 24 chr15 27253429 27253514 -74127007 - MER69 DNA AcHobo -1135 91 9 892 117 0 29 chr15 27254383 27254520 -74126001 + AluSq/x SINE Alu 1 133 -180 1796 150 3 7 chr15 27254523 27254829 -74125692 + AluSx SINE Alu 1 305 -7 326 246 234 50 chr15 27255171 27255492 -74125029 - LTR16A1 LTR ERVL -77 380 1 224 250 164 39 chr15 27256627 27256731 -74123790 + L3b LINE CR1 1334 1450 -133 225 221 12 23 chr15 27257357 27257443 -74123078 + (TA)n Simple_repeat Simple_repeat 2 86 0 180 0 0 0 chr15 27257803 27257823 -74122698 + (A)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr15 27260393 27260413 -74120108 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1075 69 0 50 chr15 27261043 27261203 -74119318 - AluY SINE Alu -3 308 157 368 333 8 0 chr15 27262081 27262201 -74118320 - MIR3 SINE MIR -3 205 85 198 284 52 75 chr15 27264201 27264335 -74116186 + L2 LINE L2 3139 3269 -3 283 308 155 23 chr15 27266087 27266780 -74113741 + L2 LINE L2 2383 3248 -24 1361 152 45 26 chr15 27266787 27267051 -74113470 - AluJo SINE Alu -1 311 43 934 142 0 8 chr15 27267347 27267481 -74113040 - FLAM_C SINE Alu -10 133 1 2057 145 0 7 chr15 27268102 27268412 -74112109 - AluJo SINE Alu 0 312 5 1297 145 20 5 chr15 27269861 27270061 -74110460 + AluSq SINE Alu 1 203 -110 565 75 0 0 chr15 27270061 27270128 -74110393 + AluSq/x SINE Alu 69 135 -178 2091 115 13 13 chr15 27270128 27270432 -74110089 + AluSx SINE Alu 1 304 -8 1897 134 36 0 chr15 27270874 27271151 -74109370 + AluSx SINE Alu 1 287 -25 2081 124 13 3 chr15 27271159 27271465 -74109056 + AluSq SINE Alu 1 309 -4 2223 98 3 0 chr15 27271479 27271812 -74108709 + AluSx SINE Alu 1 334 0 2314 72 0 14 chr15 27272517 27272807 -74107714 - AluSx SINE Alu -26 286 1 243 0 0 0 chr15 27272840 27272867 -74107654 + (TG)n Simple_repeat Simple_repeat 2 28 0 1009 139 0 13 chr15 27273760 27273918 -74106603 + AluSg/x SINE Alu 140 295 -14 3508 230 23 20 chr15 27273920 27274030 -74106491 + L1M4c LINE L1 2127 2235 -4147 788 220 0 0 chr15 27274030 27274162 -74106359 + FLAM_A SINE Alu 1 132 -1 3508 230 23 20 chr15 27274162 27275211 -74105310 + L1M4c LINE L1 2235 3285 -3097 3801 233 68 38 chr15 27275286 27276241 -74104280 + L1MDb LINE L1 775 1750 -4656 738 194 8 0 chr15 27276241 27276370 -74104151 - FLAM_A SINE Alu -3 130 1 3801 233 68 38 chr15 27276370 27276871 -74103650 + L1MDb LINE L1 1750 2234 -4172 3581 223 73 60 chr15 27276885 27277889 -74102632 + L1M4c LINE L1 3856 4845 -1557 438 69 0 0 chr15 27277889 27277947 -74102574 + (TTG)n Simple_repeat Simple_repeat 2 59 0 785 174 0 0 chr15 27277949 27278064 -74102457 - FLAM_C SINE Alu -28 115 1 3581 223 73 60 chr15 27278064 27279091 -74101430 + L1M4c LINE L1 4845 6024 -378 2240 99 0 0 chr15 27279107 27279417 -74101104 + AluSx SINE Alu 2 311 0 204 118 29 0 chr15 27280107 27280141 -74100380 + G-rich Low_complexity Low_complexity 4 38 0 2185 105 0 0 chr15 27280444 27280764 -74099757 - AluSx SINE Alu 0 320 1 22 35 0 0 chr15 27281788 27281817 -74098704 + AT_rich Low_complexity Low_complexity 1 29 0 674 241 55 19 chr15 27282045 27282226 -74098295 + MIR SINE MIR 12 192 -62 1027 121 0 0 chr15 27284117 27284249 -74096272 + FLAM_C SINE Alu 2 133 0 330 287 101 32 chr15 27286609 27286797 -74093724 - L1ME3A LINE L1 0 6170 5970 595 153 40 48 chr15 27286817 27286941 -74093580 - MLT1G LTR MaLR 0 590 468 881 200 40 0 chr15 27286942 27287092 -74093429 + MER63A DNA MER1_type 55 210 0 1276 244 168 21 chr15 27287092 27287478 -74093043 - MLT1G LTR MaLR -130 460 18 2250 62 24 0 chr15 27287478 27287769 -74092752 - AluYa5 SINE Alu -13 298 1 1392 226 108 46 chr15 27287865 27288386 -74092135 - L1MC5 LINE L1 -430 7531 6979 794 191 31 6 chr15 27288388 27288550 -74091971 + MLT1A2 LTR MaLR 209 374 0 2146 99 19 19 chr15 27288696 27289008 -74091513 - AluSx SINE Alu 0 312 1 669 285 40 59 chr15 27289013 27289469 -74091052 - HAL1b LINE L1 -841 507 61 2583 62 0 0 chr15 27289888 27290197 -74090324 - AluY SINE Alu -2 309 1 995 265 189 28 chr15 27290931 27291565 -74088956 + L2 LINE L2 2549 3313 0 1886 109 0 7 chr15 27291729 27292003 -74088518 + AluSx SINE Alu 40 311 -1 1381 215 25 104 chr15 27292134 27292538 -74087983 + MLT1A2 LTR MaLR 3 374 0 827 198 18 12 chr15 27292841 27293008 -74087513 + AluJb SINE Alu 122 289 -23 312 242 85 103 chr15 27293552 27293775 -74086746 + L1M2 LINE L1 1181 1399 -5450 614 147 55 156 chr15 27295253 27295491 -74085030 - MER20 DNA MER1_type -5 214 1 2440 57 0 10 chr15 27295699 27295997 -74084524 + AluY SINE Alu 1 295 -16 23 0 0 0 chr15 27296119 27296142 -74084379 + AT_rich Low_complexity Low_complexity 1 23 0 2373 70 13 16 chr15 27296566 27296878 -74083643 - AluSq SINE Alu -2 311 1 233 35 0 0 chr15 27297083 27297112 -74083409 - U7 snRNA snRNA -33 30 2 2655 217 96 51 chr15 27347147 27347907 -74032614 - L1M4 LINE L1 -846 5300 4507 249 324 10 0 chr15 27347904 27348006 -74032515 + HAL1 LINE L1 1506 1608 -899 * 629 316 210 14 chr15 27348017 27348603 -74031918 - L2 LINE L2 -1480 1834 1134 2000 119 24 0 chr15 27348653 27348947 -74031574 + AluSx SINE Alu 1 301 -11 369 302 148 20 chr15 27349135 27349284 -74031237 - MER5B DNA MER1_type -1 177 10 1542 78 59 4 chr15 27349802 27349831 -74030690 + L1M4c LINE L1 1447 1473 -4909 7236 65 4 0 chr15 27349831 27351289 -74029232 - L1PA5 LINE L1 0 6154 4722 1542 78 59 4 chr15 27351289 27351487 -74029034 + L1M4c LINE L1 1473 2172 -4210 808 273 98 52 chr15 27352132 27352808 -74027713 + L1ME3A LINE L1 5423 6163 -1 357 236 36 86 chr15 27353009 27353068 -74027453 + L2 LINE L2 2654 2714 -600 2168 107 17 0 chr15 27353068 27353368 -74027153 + AluSq SINE Alu 1 305 -8 357 236 36 86 chr15 27353368 27353448 -74027073 + L2 LINE L2 2714 2786 -528 232 282 87 36 chr15 27353523 27353718 -74026803 + L2 LINE L2 2873 3077 -195 188 280 229 17 chr15 27354067 27354185 -74026336 - L2 LINE L2 -5 3267 3125 34 42 0 0 chr15 27354246 27354294 -74026227 + AT_rich Low_complexity Low_complexity 1 48 0 35 24 0 0 chr15 27354346 27354388 -74026133 + AT_rich Low_complexity Low_complexity 1 42 0 186 143 79 16 chr15 27354395 27354521 -74026000 + (TA)n Simple_repeat Simple_repeat 1 134 0 336 294 17 25 chr15 27355139 27355258 -74025263 - MIR SINE MIR -33 229 112 2264 88 0 3 chr15 27355765 27356085 -74024436 + AluSg SINE Alu 1 310 0 327 303 30 71 chr15 27356466 27356862 -74023659 - L1MEd LINE L1 -4885 1234 855 1430 206 133 69 chr15 27357164 27357697 -74022824 - L1ME3A LINE L1 -6 6164 5598 2184 117 16 7 chr15 27359070 27359250 -74021271 - AluSx SINE Alu 0 312 126 216 0 0 0 chr15 27359250 27359274 -74021247 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2184 117 16 7 chr15 27359274 27359402 -74021119 - AluSx SINE Alu -186 126 1 5607 178 16 40 chr15 27360644 27362006 -74018515 - L1PA16 LINE L1 -301 5865 4572 2013 121 17 0 chr15 27362006 27362303 -74018218 - AluSq SINE Alu -11 302 1 5607 178 16 40 chr15 27362303 27362836 -74017685 - L1PA16 LINE L1 -1594 4572 4027 799 248 105 33 chr15 27362832 27363131 -74017390 - L1ME LINE L1 -377 5793 5458 * 2753 28 6 0 chr15 27363131 27363452 -74017069 - L1PA4 LINE L1 -2 6153 5831 799 248 105 33 chr15 27363452 27363543 -74016978 - L1ME LINE L1 -712 5458 5375 486 224 0 0 chr15 27363535 27363633 -74016888 + L1ME LINE L1 5710 5807 -363 * 889 189 33 6 chr15 27363631 27363811 -74016710 - L1ME LINE L1 -447 5723 5539 272 268 28 42 chr15 27363833 27363975 -74016546 - L1MC4 LINE L1 -1 8041 7902 297 243 19 19 chr15 27363989 27364092 -74016429 + (TA)n Simple_repeat Simple_repeat 2 104 0 4054 217 204 11 chr15 27364093 27365394 -74015127 - L1MC4 LINE L1 -124 7918 6367 678 268 36 13 chr15 27365405 27365629 -74014892 - L1ME2 LINE L1 -10 6154 5926 185 211 19 58 chr15 27366322 27366374 -74014147 + L3 LINE CR1 1519 1568 -9 227 79 26 0 chr15 27367085 27367123 -74013398 + (TA)n Simple_repeat Simple_repeat 2 40 0 314 269 254 8 chr15 27367123 27367253 -74013268 - MIR SINE MIR -67 195 34 522 0 0 0 chr15 27367781 27367839 -74012682 + (TG)n Simple_repeat Simple_repeat 2 59 0 2344 64 0 3 chr15 27368731 27369027 -74011494 - AluY SINE Alu -16 295 1 396 267 9 26 chr15 27369241 27369357 -74011164 + CT-rich Low_complexity Low_complexity 4 117 0 270 153 0 0 chr15 27369385 27369444 -74011077 + (CA)n Simple_repeat Simple_repeat 1 59 0 231 61 0 0 chr15 27369446 27369479 -74011042 + (TC)n Simple_repeat Simple_repeat 2 34 0 619 165 10 0 chr15 27369562 27369659 -74010862 + Charlie1a DNA MER1_type 1 98 -1357 6201 130 26 4 chr15 27369662 27370726 -74009795 + L1PB1 LINE L1 4704 5802 -349 425 51 39 13 chr15 27370726 27370804 -74009717 + (TA)n Simple_repeat Simple_repeat 2 81 0 6201 130 26 4 chr15 27370804 27371160 -74009361 + L1PB1 LINE L1 5802 6149 -2 237 271 0 14 chr15 27371160 27371230 -74009291 - L1M4 LINE L1 -2584 3562 3494 4073 190 92 18 chr15 27371235 27372177 -74008344 + Charlie1a DNA MER1_type 95 1106 -349 358 214 110 39 chr15 27372218 27372400 -74008121 - L1ME3A LINE L1 -209 5961 5767 1130 212 0 4 chr15 27372406 27372632 -74007889 - L1PA16 LINE L1 -8 6158 5934 1388 106 0 19 chr15 27372732 27372939 -74007582 - AluSq SINE Alu -110 203 1 686 254 139 0 chr15 27373430 27373639 -74006882 - MIR SINE MIR -4 258 21 2288 85 0 16 chr15 27374024 27374340 -74006181 + AluY SINE Alu 1 311 0 187 238 139 66 chr15 27374848 27374970 -74005551 - MIR SINE MIR -101 161 31 980 248 18 5 chr15 27375139 27375357 -74005164 - MER58A DNA MER1_type -2 222 2 1019 189 0 0 chr15 27375959 27376128 -74004393 - MLT1A1 LTR MaLR 0 365 197 383 174 0 29 chr15 27376132 27376201 -74004320 - MLT1A1 LTR MaLR -298 67 1 363 190 139 0 chr15 27377629 27377708 -74002813 - MLT1B LTR MaLR -300 90 1 181 324 28 14 chr15 27377958 27378029 -74002492 + MIR SINE MIR 78 149 -59 332 22 0 22 chr15 27379860 27379906 -74000615 + (TG)n Simple_repeat Simple_repeat 2 46 0 382 340 40 0 chr15 27380765 27380915 -73999606 + MIR SINE MIR 92 247 -15 3631 51 0 22 chr15 27385457 27385863 -73994658 + MLT2A1 LTR ERVL 1 397 -47 414 57 0 0 chr15 27385863 27385916 -73994605 + (CA)n Simple_repeat Simple_repeat 2 54 0 3631 51 0 22 chr15 27385916 27385963 -73994558 + MLT2A1 LTR ERVL 397 444 0 36 82 0 0 chr15 27386134 27386219 -73994302 + AT_rich Low_complexity Low_complexity 1 85 0 180 0 0 0 chr15 27386932 27386952 -73993569 + (T)n Simple_repeat Simple_repeat 1 20 0 1621 204 23 69 chr15 27388247 27388639 -73991882 - MLT1A2 LTR MaLR 0 374 1 4535 168 40 22 chr15 27391083 27391802 -73988719 + L1MB8 LINE L1 5097 5840 -338 2166 84 0 40 chr15 27391802 27392124 -73988397 + AluSc SINE Alu 1 309 0 4535 168 40 22 chr15 27392124 27392469 -73988052 + L1MB8 LINE L1 5840 6178 0 293 247 141 12 chr15 27392670 27392755 -73987766 + MIR SINE MIR 140 235 -27 243 241 56 19 chr15 27393411 27393573 -73986948 + (TA)n Simple_repeat Simple_repeat 1 168 0 241 146 0 21 chr15 27393822 27393870 -73986651 - L1MD3 LINE L1 -11 7984 7938 23 0 0 0 chr15 27394401 27394424 -73986097 + AT_rich Low_complexity Low_complexity 1 23 0 658 293 154 17 chr15 27394455 27394813 -73985708 - MLT1I LTR MaLR 0 409 3 377 328 34 28 chr15 27394818 27394995 -73985526 - L1ME LINE L1 -361 5760 5583 823 268 5 0 chr15 27395005 27395203 -73985318 - MLT1A1 LTR MaLR -3 362 164 752 204 11 43 chr15 27395223 27395409 -73985112 - MLT1A1 LTR MaLR -176 189 10 2219 62 20 14 chr15 27396546 27396838 -73983683 - AluY SINE Alu -17 294 1 239 285 72 62 chr15 27397676 27397867 -73982654 + MIR SINE MIR 17 206 -56 2106 130 0 0 chr15 27398423 27398722 -73981799 + AluSx SINE Alu 1 299 -13 381 346 73 16 chr15 27398838 27399222 -73981299 + MLT1I LTR MaLR 3 408 -1 559 256 45 0 chr15 27399551 27399707 -73980814 - MER103 DNA DNA -1 165 3 283 189 20 33 chr15 27401684 27401837 -73978684 + (CA)n Simple_repeat Simple_repeat 2 152 0 251 132 59 0 chr15 27401880 27401948 -73978573 + (CA)n Simple_repeat Simple_repeat 1 72 0 1115 208 4 73 chr15 27402558 27402832 -73977689 - MLT1B LTR MaLR -4 386 132 511 216 78 33 chr15 27402937 27403090 -73977431 - L1MC4 LINE L1 -296 7746 7587 5616 57 1 11 chr15 27403094 27403797 -73976724 - L1PA7 LINE L1 0 6154 5459 1859 150 134 28 chr15 27403953 27404340 -73976181 + MSTA LTR MaLR 1 428 0 2160 92 27 0 chr15 27407504 27407797 -73972724 - AluSg SINE Alu -8 302 2 853 296 92 40 chr15 27409711 27410377 -73970144 - HAL1b LINE L1 -295 1053 354 2139 118 5 62 chr15 27410444 27410818 -73969703 - THE1A LTR MaLR -2 353 1 11769 99 5 0 chr15 27410818 27412390 -73968131 - THE1A-int LTR MaLR 0 1580 1 2011 136 21 51 chr15 27412390 27412765 -73967756 - THE1B LTR MaLR 0 364 1 1952 150 0 27 chr15 27412892 27413192 -73967329 + AluSx SINE Alu 1 292 -20 826 176 96 0 chr15 27413575 27413763 -73966758 - L1MA6 LINE L1 -4 6296 6091 183 277 0 0 chr15 27414258 27414305 -73966216 + L2 LINE L2 3267 3313 0 227 289 105 9 chr15 27415634 27415748 -73964773 - MIR SINE MIR -26 236 112 1443 232 72 5 chr15 27416168 27416582 -73963939 + L1ME2 LINE L1 4740 5181 -965 1316 271 119 18 chr15 27416586 27417338 -73963183 + L1ME2 LINE L1 5282 6137 -27 3575 158 75 7 chr15 27417691 27418368 -73962153 - L1MB2 LINE L1 -7 6164 5442 183 129 0 0 chr15 27419515 27419546 -73960975 + (CAGAA)n Simple_repeat Simple_repeat 3 33 0 204 40 0 0 chr15 27419639 27419664 -73960857 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 809 208 27 6 chr15 27420459 27420642 -73959879 - MER53 DNA DNA 0 189 3 543 216 23 11 chr15 27420894 27421070 -73959451 + (CATA)n Simple_repeat Simple_repeat 1 178 0 1332 119 75 40 chr15 27421086 27421312 -73959209 - MER46A DNA MER2_type -2 234 1 4708 237 60 15 chr15 27421746 27422494 -73958027 + L1M4 LINE L1 3623 4336 -1810 2285 93 0 59 chr15 27422494 27422816 -73957705 + AluSg SINE Alu 1 303 -7 4708 237 60 15 chr15 27422816 27423542 -73956979 + L1M4 LINE L1 4336 5163 -983 230 343 0 0 chr15 27424146 27424216 -73956305 + L2 LINE L2 2930 2999 -314 408 318 50 22 chr15 27424251 27424528 -73955993 + LTR40c LTR ERVL 68 352 -113 1701 188 15 52 chr15 27425001 27425406 -73955115 + MLT1B LTR MaLR 1 390 0 181 258 0 16 chr15 27425678 27425740 -73954781 - L2 LINE L2 -73 3240 3180 677 284 23 23 chr15 27425763 27425981 -73954540 + HsTC2 DNA Tc2 296 513 -1385 307 269 107 61 chr15 27426116 27426208 -73954313 + HsTC2 DNA Tc2 1631 1717 -181 2210 114 3 0 chr15 27426208 27426497 -73954024 + AluSx SINE Alu 1 290 -22 307 269 107 61 chr15 27426497 27426601 -73953920 + HsTC2 DNA Tc2 1717 1836 -62 1953 177 34 46 chr15 27426632 27426981 -73953540 + MLT2D LTR ERVL 4 349 -65 561 63 32 0 chr15 27426981 27427076 -73953445 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 1953 177 34 46 chr15 27427076 27427139 -73953382 + MLT2D LTR ERVL 349 411 -3 232 247 52 13 chr15 27427412 27427489 -73953032 - MIR SINE MIR -116 146 67 426 263 15 23 chr15 27428557 27428690 -73951831 + L2 LINE L2 3182 3313 0 439 301 160 19 chr15 27428929 27429526 -73950995 + L1M4 LINE L1 4741 5421 -749 403 301 205 23 chr15 27430684 27431549 -73948972 - L2 LINE L2 -351 2963 1942 2483 84 0 0 chr15 27431915 27432223 -73948298 + AluSc SINE Alu 1 308 -1 654 166 31 43 chr15 27432877 27433040 -73947481 + MER5A DNA MER1_type 6 166 -23 568 68 14 0 chr15 27433347 27433420 -73947101 - AluSp SINE Alu -174 139 66 838 80 26 0 chr15 27433420 27433533 -73946988 + AluSp/q SINE Alu 187 302 -11 294 307 37 49 chr15 27434241 27434404 -73946117 + MIR SINE MIR 33 193 -69 258 203 51 0 chr15 27434908 27434967 -73945554 + MLT1K LTR MaLR 517 578 -10 456 247 124 34 chr15 27436927 27436965 -73943556 - MIR SINE MIR 0 262 229 2392 125 89 0 chr15 27436965 27437358 -73943163 - MSTC LTR MaLR 0 428 1 456 247 124 34 chr15 27437358 27437497 -73943024 - MIR SINE MIR -33 229 69 229 287 91 42 chr15 27437639 27437782 -73942739 - MLT1J1 LTR MaLR -164 282 133 3945 205 70 3 chr15 27438554 27439428 -73941093 - Charlie1a DNA MER1_type -4 1451 520 529 300 70 36 chr15 27439535 27439700 -73940821 - L1M4 LINE L1 -842 5304 5146 2029 149 0 0 chr15 27439700 27440002 -73940519 - AluSx SINE Alu -9 303 2 529 300 70 36 chr15 27440002 27440223 -73940298 - L1M4 LINE L1 -1000 5146 4905 1130 213 125 86 chr15 27441978 27442395 -73938126 - Charlie1a DNA MER1_type -969 486 54 699 291 124 25 chr15 27442551 27443025 -73937496 + L2 LINE L2 1992 2512 -802 193 254 42 42 chr15 27443304 27443375 -73937146 + L2 LINE L2 2866 2936 -336 1248 243 157 10 chr15 27444247 27444703 -73935818 - MLT1G LTR MaLR -96 494 1 294 73 0 0 chr15 27447025 27447066 -73933455 + (TG)n Simple_repeat Simple_repeat 1 41 0 1274 211 73 10 chr15 27448450 27448780 -73931741 + MLT1A1 LTR MaLR 1 362 -3 745 11 0 0 chr15 27448849 27448936 -73931585 - L1PA3 LINE L1 0 6155 6069 394 314 197 20 chr15 27450204 27450503 -73930018 + L2 LINE L2 2962 3313 0 270 0 0 0 chr15 27450688 27450718 -73929803 + (TG)n Simple_repeat Simple_repeat 2 31 0 197 337 44 12 chr15 27452072 27452176 -73928345 - MIR SINE MIR -47 161 55 1827 160 45 15 chr15 27452193 27452530 -73927991 + MLT1A1 LTR MaLR 14 360 -5 229 270 0 0 chr15 27452713 27452787 -73927734 + (TA)n Simple_repeat Simple_repeat 2 75 0 611 273 35 0 chr15 27453127 27453299 -73927222 - MER5B DNA MER1_type 0 178 1 298 282 40 24 chr15 27453396 27453520 -73927001 - L2 LINE L2 -30 3283 3158 2871 3 0 0 chr15 27453535 27453836 -73926685 - AluYa5 SINE Alu -10 301 1 649 308 68 39 chr15 27454192 27454530 -73925991 - L2 LINE L2 -686 2628 2281 3422 254 70 17 chr15 27454603 27455824 -73924697 - L1M4 LINE L1 -1847 4299 3015 1704 223 44 24 chr15 27455828 27456286 -73924235 - L1ME1 LINE L1 0 6426 5960 417 223 11 11 chr15 27456386 27456480 -73924041 - L1ME1 LINE L1 -507 5919 5826 1112 234 57 29 chr15 27456485 27457170 -73923351 - L1ME1 LINE L1 -3653 2753 2059 1956 153 14 0 chr15 27457196 27457490 -73923031 - AluJb SINE Alu -13 299 2 318 315 31 8 chr15 27460799 27460926 -73919595 - L2 LINE L2 -4 3309 3180 585 249 46 23 chr15 27461032 27461205 -73919316 + MER5B DNA MER1_type 2 178 0 2693 225 92 35 chr15 27461724 27462556 -73917965 - L1ME1 LINE L1 -4411 1995 1109 2131 114 0 0 chr15 27462556 27462867 -73917654 - AluSx SINE Alu 0 311 1 2693 225 92 35 chr15 27462867 27463220 -73917301 - L1ME1 LINE L1 -5297 1109 777 2861 157 74 9 chr15 27463711 27464266 -73916255 - L1MB8 LINE L1 -16 6162 5572 844 231 10 10 chr15 27464605 27464804 -73915717 + MER96B DNA MER1_type? 1 199 -218 290 331 131 19 chr15 27465039 27465199 -73915322 + MIR SINE MIR 22 199 -63 3428 224 80 47 chr15 27466636 27467958 -73912563 - L1MC5 LINE L1 -34 7927 6551 503 331 35 26 chr15 27468088 27468399 -73912122 - L1 LINE L1 -1815 4331 4018 423 0 0 0 chr15 27468411 27468458 -73912063 + (CA)n Simple_repeat Simple_repeat 2 48 0 3141 56 24 0 chr15 27468469 27468846 -73911675 - L1PA10 LINE L1 -15 6153 5768 14661 180 30 9 chr15 27468851 27474363 -73906158 - L1PB1 LINE L1 0 6867 1093 3546 221 66 10 chr15 27474367 27475324 -73905197 - L1PB1 LINE L1 -5818 1045 36 4150 101 32 8 chr15 27475334 27475888 -73904633 - L1P4 LINE L1 -387 5781 5196 2592 30 0 13 chr15 27475888 27476187 -73904334 + AluY SINE Alu 1 295 -16 4150 101 32 8 chr15 27476187 27476675 -73903846 - L1P4 LINE L1 -972 5196 4721 274 303 32 88 chr15 27476745 27476938 -73903583 - L1 LINE L1 -2251 3895 3693 1955 121 4 0 chr15 27476938 27477211 -73903310 - L1PA15 LINE L1 0 6165 5892 274 303 32 88 chr15 27477211 27477574 -73902947 - L1 LINE L1 -2453 3693 3370 403 205 36 0 chr15 27478219 27478302 -73902219 - Tigger5 DNA MER2_type 0 2323 2238 340 192 14 14 chr15 27478352 27478425 -73902096 - Tigger5 DNA MER2_type 0 2323 2251 240 253 89 79 chr15 27480042 27480232 -73900289 + MLT1K LTR MaLR 395 586 -2 318 259 62 18 chr15 27480260 27480372 -73900149 + L1 LINE L1 3665 3781 -2365 256 279 87 10 chr15 27480440 27480544 -73899977 + MLT1J LTR MaLR 342 453 -58 251 250 0 62 chr15 27480739 27480819 -73899702 - L1ME LINE L1 -298 5933 5859 5289 244 64 80 chr15 27480866 27483436 -73897085 - L1MEc LINE L1 -374 5859 3281 852 170 0 0 chr15 27483436 27483577 -73896944 - FLAM_C SINE Alu -2 141 1 5289 244 64 80 chr15 27483577 27484628 -73895893 - L1MEc LINE L1 -2952 3281 2215 439 278 116 37 chr15 27484633 27485638 -73894883 - L1MDa LINE L1 -2082 4458 3254 264 221 22 177 chr15 27485688 27485774 -73894747 - L1MC5 LINE L1 -50 7911 7866 782 54 0 0 chr15 27485774 27485866 -73894655 + L1PA6 LINE L1 6056 6147 -7 264 221 22 177 chr15 27485866 27485960 -73894561 - L1MC5 LINE L1 -95 7866 7759 * 815 252 67 52 chr15 27485956 27486650 -73893871 - L1MDa LINE L1 -3253 3287 2403 267 315 69 72 chr15 27486969 27487315 -73893206 + L2 LINE L2 2945 3289 -24 1690 148 81 0 chr15 27487325 27487596 -73892925 + AluSx SINE Alu 1 293 -19 186 43 0 0 chr15 27487793 27487816 -73892705 + (CATTT)n Simple_repeat Simple_repeat 2 24 0 214 289 70 35 chr15 27488020 27488162 -73892359 + MER5A DNA MER1_type 2 148 -41 286 316 114 42 chr15 27489404 27489923 -73890598 - L1ME LINE L1 -340 5822 5267 1836 136 4 0 chr15 27490099 27490356 -73890165 + AluSx SINE Alu 23 280 -32 30 43 0 43 chr15 27490417 27490487 -73890034 + AT_rich Low_complexity Low_complexity 1 67 0 351 265 10 20 chr15 27490790 27490892 -73889629 - L1MC5 LINE L1 -48 7913 7813 7091 70 12 0 chr15 27490982 27491641 -73888880 - L1PA13 LINE L1 -4 6159 5510 2176 95 0 41 chr15 27491641 27491957 -73888564 - AluSx SINE Alu -9 303 1 7091 70 12 0 chr15 27491957 27493098 -73887423 - L1PA13 LINE L1 -653 5510 4337 586 295 219 26 chr15 27493504 27493806 -73886715 - L2 LINE L2 -1 3271 2912 212 263 40 0 chr15 27493956 27494032 -73886489 - MIR SINE MIR -26 236 158 4161 125 39 3 chr15 27495310 27495933 -73884588 - L1MC1 LINE L1 0 6333 5689 368 337 12 0 chr15 27496429 27496563 -73883958 - MIR SINE MIR -55 153 17 1759 167 35 12 chr15 27496903 27497245 -73883276 - MLT1A1 LTR MaLR -15 350 1 217 281 109 0 chr15 27497821 27497885 -73882636 - MIR3 SINE MIR -129 79 9 1821 130 87 34 chr15 27497936 27498258 -73882263 - MER44D DNA MER2_type 0 609 1 255 318 46 107 chr15 27498295 27498556 -73881965 - L2 LINE L2 -35 3237 2993 874 359 105 26 chr15 27498773 27499581 -73880940 - L2 LINE L2 -611 2703 1832 328 228 65 76 chr15 27499581 27499765 -73880756 + L1MC4 LINE L1 4498 4679 -1467 180 111 0 0 chr15 27500710 27500737 -73879784 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 321 26 0 0 chr15 27500830 27500868 -73879653 + (TG)n Simple_repeat Simple_repeat 2 39 0 410 324 58 6 chr15 27500967 27501140 -73879381 - L2 LINE L2 -1056 2258 2077 324 233 58 0 chr15 27501148 27501234 -73879287 - L2 LINE L2 -1036 2278 2188 1008 275 90 14 chr15 27501247 27501614 -73878907 - MLT1I LTR MaLR -14 395 1 651 274 74 55 chr15 27503038 27503619 -73876902 + L1MC4 LINE L1 5268 5647 -517 22 0 0 0 chr15 27503932 27503954 -73876567 + GC_rich Low_complexity Low_complexity 1 22 0 246 339 102 0 chr15 27505384 27505502 -73875019 - L2 LINE L2 -11 3261 3132 3529 126 46 59 chr15 27506179 27506651 -73873870 - MER7C DNA MER2_type -2426 602 138 2366 64 7 3 chr15 27506651 27506947 -73873574 + AluY SINE Alu 3 299 -12 3529 126 46 59 chr15 27506947 27507084 -73873437 - MER7C DNA MER2_type -2890 138 1 1237 271 80 51 chr15 27507431 27508041 -73872480 - L2 LINE L2 -377 2937 2310 856 184 48 0 chr15 27508115 27508262 -73872259 + FRAM SINE Alu 9 162 -14 1595 237 68 44 chr15 27508800 27509344 -73871177 + L1MC4 LINE L1 6980 7536 -506 796 42 0 0 chr15 27509394 27509489 -73871032 + L1P2 LINE L1 5441 5535 -619 254 302 90 32 chr15 27509589 27509778 -73870743 + L1M4 LINE L1 3882 4081 -2065 356 181 168 32 chr15 27510053 27510208 -73870313 + L1M4 LINE L1 4524 4699 -1447 257 270 14 0 chr15 27510373 27510447 -73870074 + MLT1L LTR MaLR 3 77 -538 21 0 0 0 chr15 27510922 27510943 -73869578 + AT_rich Low_complexity Low_complexity 1 21 0 648 293 105 36 chr15 27511152 27511514 -73869007 + MLT1J2 LTR MaLR 62 448 -2 2356 112 24 37 chr15 27511555 27511931 -73868590 + THE1C LTR MaLR 3 373 -2 10984 101 14 33 chr15 27511933 27513544 -73866977 + THE1C-int LTR MaLR 1 1580 0 2013 103 44 82 chr15 27513546 27513934 -73866587 + THE1C LTR MaLR 3 375 0 266 299 53 66 chr15 27514082 27514326 -73866195 + L1MC/D LINE L1 5303 5543 -2265 356 278 20 13 chr15 27515149 27515300 -73865221 + (TCTA)n Simple_repeat Simple_repeat 2 153 0 252 170 0 0 chr15 27515438 27515491 -73865030 + (TCCA)n Simple_repeat Simple_repeat 4 56 0 381 255 5 54 chr15 27515500 27515684 -73864837 + (TCTG)n Simple_repeat Simple_repeat 4 178 0 1576 244 111 12 chr15 27516361 27516857 -73863664 + L1M4 LINE L1 4463 5007 -1139 187 254 6 36 chr15 27516885 27517050 -73863471 + (TG)n Simple_repeat Simple_repeat 1 160 0 203 138 0 0 chr15 27517719 27517748 -73862773 + L2 LINE L2 3216 3244 -28 275 125 0 0 chr15 27517762 27517810 -73862711 + L1MA3 LINE L1 6258 6305 0 1596 231 97 43 chr15 27518513 27519051 -73861470 - MLT1F1 LTR MaLR 0 567 1 424 216 69 99 chr15 27519366 27519508 -73861013 + LTR37B LTR ERV1 185 319 -149 2305 63 0 46 chr15 27519508 27519810 -73860711 + AluY SINE Alu 1 288 -23 424 216 69 99 chr15 27519810 27519899 -73860622 + LTR37B LTR ERV1 319 409 -59 210 302 16 93 chr15 27521705 27521834 -73858687 - MIR SINE MIR -130 132 14 835 286 101 49 chr15 27521951 27522078 -73858443 + L1MC4 LINE L1 7126 7245 -797 2379 88 0 7 chr15 27522078 27522374 -73858147 + AluSc SINE Alu 1 294 -15 835 286 101 49 chr15 27522374 27523025 -73857496 + L1MC4 LINE L1 7245 8042 0 40 59 0 0 chr15 27523701 27523769 -73856752 + AT_rich Low_complexity Low_complexity 1 68 0 21 71 0 0 chr15 27524162 27524204 -73856317 + AT_rich Low_complexity Low_complexity 1 42 0 2656 192 15 65 chr15 27524561 27525238 -73855283 + L1M4 LINE L1 4658 5300 -846 * 5143 143 37 3 chr15 27525232 27526800 -73853721 + L1MA4 LINE L1 4486 6110 -190 3572 144 29 53 chr15 27528624 27528991 -73851530 - L1MA8 LINE L1 -155 6136 5793 2566 50 3 0 chr15 27528991 27529288 -73851233 - AluY SINE Alu -13 298 1 3572 144 29 53 chr15 27529288 27529643 -73850878 - L1MA8 LINE L1 -498 5793 5431 205 287 78 30 chr15 27531768 27531936 -73848585 - MIR SINE MIR -11 251 75 22 0 0 0 chr15 27532283 27532305 -73848216 + AT_rich Low_complexity Low_complexity 1 22 0 628 230 40 0 chr15 27532568 27532716 -73847805 + MER5A DNA MER1_type 1 154 -35 2561 61 0 0 chr15 27533226 27533523 -73846998 - AluY SINE Alu -14 297 1 222 258 0 0 chr15 27534666 27534728 -73845793 + CT-rich Low_complexity Low_complexity 1 62 0 2524 211 42 24 chr15 27534906 27535533 -73844988 + L1MC4a LINE L1 7159 7796 -12 37 39 0 0 chr15 27535533 27535584 -73844937 + AT_rich Low_complexity Low_complexity 1 51 0 7044 207 65 10 chr15 27535587 27537179 -73843342 + L1MD1 LINE L1 3270 5083 -1159 231 36 0 0 chr15 27537179 27537207 -73843314 + (GAAA)n Simple_repeat Simple_repeat 3 30 0 7044 207 65 10 chr15 27537207 27538434 -73842087 + L1MD1 LINE L1 5083 6241 -1 273 250 26 0 chr15 27539098 27539174 -73841347 + MER5A DNA MER1_type 29 106 -83 204 226 19 0 chr15 27539233 27539286 -73841235 + MIR SINE MIR 133 186 -76 627 227 129 12 chr15 27539970 27540133 -73840388 + MER58A DNA MER1_type 42 223 -1 256 373 35 35 chr15 27540142 27540343 -73840178 - L3 LINE CR1 -920 657 457 407 302 38 19 chr15 27540351 27540510 -73840011 - MIR3 SINE MIR -15 193 32 361 278 97 36 chr15 27542280 27542591 -73837930 + L1ME4a LINE L1 5396 5726 -568 267 313 12 0 chr15 27543929 27544009 -73836512 + (TA)n Simple_repeat Simple_repeat 2 82 0 275 294 76 0 chr15 27544268 27544387 -73836134 + L1ME4a LINE L1 5991 6118 -3 3175 198 75 11 chr15 27544812 27545569 -73834952 + L1PB1 LINE L1 240 1045 -5818 13833 189 46 11 chr15 27545573 27551000 -73829521 + L1PB1 LINE L1 1093 6866 -1 2838 77 26 3 chr15 27551006 27551397 -73829124 + L1PA10 LINE L1 5768 6167 -1 204 40 0 0 chr15 27551399 27551424 -73829097 + (TG)n Simple_repeat Simple_repeat 2 26 0 402 328 38 29 chr15 27551432 27551746 -73828775 + L1 LINE L1 4015 4331 -1815 3249 222 84 49 chr15 27551876 27553196 -73827325 + L1MC5 LINE L1 6551 7927 -34 248 317 145 21 chr15 27554636 27554781 -73825740 - MIR SINE MIR -78 184 22 888 228 14 9 chr15 27555033 27555244 -73825277 - MER96B DNA MER1_type? -205 212 1 1954 117 0 53 chr15 27555568 27555915 -73824606 - AluSq SINE Alu 0 331 1 496 251 179 0 chr15 27556406 27556601 -73823920 - MIR SINE MIR -4 258 29 2374 87 0 19 chr15 27556996 27557305 -73823216 + AluY SINE Alu 1 303 -8 979 248 18 5 chr15 27558095 27558313 -73822208 - MER58A DNA MER1_type -2 222 2 1009 189 0 0 chr15 27558915 27559084 -73821437 - MLT1A1 LTR MaLR 0 365 197 398 159 0 29 chr15 27559088 27559157 -73821364 - MLT1A1 LTR MaLR -298 67 1 299 347 67 22 chr15 27560641 27560868 -73819653 + MIR SINE MIR 4 248 -14 4075 243 61 22 chr15 27560999 27561476 -73819045 - L1ME1 LINE L1 -19 6407 5950 2173 102 13 29 chr15 27561476 27561791 -73818730 - AluSg SINE Alu 0 310 1 4075 243 61 22 chr15 27561791 27563137 -73817384 - L1ME1 LINE L1 -476 5950 4482 234 0 0 0 chr15 27563137 27563163 -73817358 + (TG)n Simple_repeat Simple_repeat 2 27 0 4075 243 61 22 chr15 27563163 27563479 -73817042 - L1ME1 LINE L1 -1944 4482 4180 1238 253 83 50 chr15 27563593 27564173 -73816348 - L1ME1 LINE L1 -4988 1421 823 4018 172 21 32 chr15 27565487 27565671 -73814850 - LTR39 LTR ERV1 0 783 599 2205 128 3 0 chr15 27565671 27565977 -73814544 + AluSx SINE Alu 1 307 -5 4018 172 21 32 chr15 27565977 27566583 -73813938 - LTR39 LTR ERV1 -184 599 1 212 244 37 49 chr15 27566879 27566961 -73813560 + L2 LINE L2 3141 3221 -51 547 251 84 15 chr15 27567052 27567255 -73813266 - L2 LINE L2 -148 3165 2949 2421 107 0 0 chr15 27567979 27568289 -73812232 + AluSg SINE Alu 1 310 0 198 167 0 0 chr15 27568290 27568326 -73812195 + GA-rich Low_complexity Low_complexity 1 36 0 380 195 61 12 chr15 27568875 27568957 -73811564 - MER58A DNA MER1_type -17 90 5 647 260 110 34 chr15 27568961 27569315 -73811206 + L1MC5 LINE L1 7498 7878 -83 2056 264 61 26 chr15 27569339 27569953 -73810568 + L1ME1 LINE L1 8 648 -5748 1575 204 10 10 chr15 27569953 27570257 -73810264 + AluJo SINE Alu 1 304 -8 2056 264 61 26 chr15 27570257 27570293 -73810228 + L1ME1 LINE L1 648 681 -5715 1241 235 81 86 chr15 27570317 27570928 -73809593 - LTR19C LTR ERV1 0 779 1 1435 224 27 68 chr15 27570932 27571445 -73809076 + L1ME1 LINE L1 699 1183 -5213 754 208 0 8 chr15 27571445 27571575 -73808946 + FLAM_A SINE Alu 1 129 -4 1435 224 27 68 chr15 27571575 27571698 -73808823 + L1ME1 LINE L1 1183 1309 -5087 453 265 41 6 chr15 27571687 27571857 -73808664 + L1ME1 LINE L1 3053 3228 -2987 * 5639 216 43 100 chr15 27571859 27573426 -73807095 + L1ME1 LINE L1 3152 4807 -1428 2039 126 37 37 chr15 27573426 27573800 -73806721 - THE1C LTR MaLR -1 374 1 5639 216 43 100 chr15 27573800 27574377 -73806144 + L1ME1 LINE L1 4807 5415 -820 2039 95 82 0 chr15 27574377 27574682 -73805839 - L1PB1 LINE L1 0 6151 5822 5639 216 43 100 chr15 27574682 27575663 -73804858 + L1ME1 LINE L1 5415 6094 -141 2033 107 52 0 chr15 27575663 27575953 -73804568 - AluY SINE Alu -6 305 1 10224 102 46 23 chr15 27576003 27576111 -73804410 - Tigger1 DNA MER2_type -4 2414 2310 1628 163 7 52 chr15 27576111 27576417 -73804104 + AluJb SINE Alu 1 292 -20 10224 102 46 23 chr15 27576417 27577885 -73802636 - Tigger1 DNA MER2_type -108 2310 802 2536 159 28 35 chr15 27577894 27578352 -73802169 - Tigger1 DNA MER2_type -1963 455 1 235 198 99 12 chr15 27578352 27578433 -73802088 + L1MA10 LINE L1 6243 6330 -4 323 284 43 9 chr15 27579044 27579160 -73801361 + MIR3 SINE MIR 56 175 -33 4576 167 36 19 chr15 27580168 27581053 -73799468 + MER54A LTR ERVL 2 901 0 1863 170 0 0 chr15 27581187 27581476 -73799045 + AluJo SINE Alu 1 289 -23 269 250 62 0 chr15 27581612 27581708 -73798813 - L1MC4 LINE L1 -17 8025 7924 222 259 0 0 chr15 27581708 27581762 -73798759 + (TCCA)n Simple_repeat Simple_repeat 1 54 0 1961 245 26 83 chr15 27581874 27582641 -73797880 - L1ME2 LINE L1 -14 6150 5428 22 0 0 0 chr15 27582641 27582663 -73797858 + AT_rich Low_complexity Low_complexity 1 22 0 1126 222 162 55 chr15 27582695 27583182 -73797339 - MLT1F LTR MaLR 0 542 4 260 284 59 0 chr15 27584052 27584154 -73796367 - L1ME3A LINE L1 -8 6162 6055 42368 53 6 18 chr15 27584169 27590419 -73790102 + L1PA4 LINE L1 11 6177 0 2281 107 7 3 chr15 27590555 27590855 -73789666 - AluSx SINE Alu -11 301 1 1811 105 47 0 chr15 27590886 27591144 -73789377 - MSTB1 LTR MaLR 0 432 163 203 79 26 0 chr15 27591159 27591197 -73789324 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1161 154 48 92 chr15 27591198 27591470 -73789051 - AluSp SINE Alu -32 281 22 923 145 45 99 chr15 27591470 27591691 -73788830 + LTR15 LTR ERV1 10 218 -275 2429 156 103 54 chr15 27591691 27592308 -73788213 - pTR5 LTR ERV1 -670 1768 1176 897 220 62 56 chr15 27592308 27592516 -73788005 + L1MEc LINE L1 1649 1861 -4535 1716 191 0 17 chr15 27592516 27592814 -73787707 - AluJb SINE Alu -19 293 1 897 220 62 56 chr15 27592814 27592942 -73787579 + L1MEc LINE L1 1861 1987 -4409 2268 99 3 0 chr15 27593093 27593387 -73787134 + AluSg SINE Alu 1 295 -15 22 0 0 0 chr15 27593816 27593838 -73786683 + AT_rich Low_complexity Low_complexity 1 22 0 310 278 183 33 chr15 27593926 27594167 -73786354 - L1M4 LINE L1 -1313 4833 4557 314 333 56 20 chr15 27594496 27594691 -73785830 - L1M4 LINE L1 -3104 3042 2841 746 167 0 53 chr15 27594787 27594937 -73785584 + FLAM_C SINE Alu 2 143 0 367 125 75 25 chr15 27594957 27595037 -73785484 - L1MB3 LINE L1 -17 6166 6083 324 0 0 0 chr15 27595145 27595181 -73785340 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 1796 176 0 3 chr15 27595181 27595465 -73785056 - AluJo SINE Alu -29 283 1 685 169 0 25 chr15 27595465 27595583 -73784938 - FRAM SINE Alu -6 170 56 682 235 84 50 chr15 27595856 27596154 -73784367 + L1MC4a LINE L1 5702 6009 -1799 2303 84 0 7 chr15 27596772 27597068 -73783453 - AluY SINE Alu -17 294 1 461 230 120 40 chr15 27597246 27597712 -73782809 - L1ME LINE L1 -469 5701 5188 609 173 17 34 chr15 27597721 27597900 -73782621 + CT-rich Low_complexity Low_complexity 2 177 0 1491 204 4 4 chr15 27598013 27598288 -73782233 - AluJo SINE Alu -37 275 1 532 236 114 7 chr15 27599030 27599139 -73781382 - MER5A DNA MER1_type -33 156 27 252 0 0 0 chr15 27599139 27599167 -73781354 + (CTG)n Simple_repeat Simple_repeat 2 29 0 532 236 114 7 chr15 27599167 27599197 -73781324 - MER5A DNA MER1_type -162 27 2 2315 107 0 0 chr15 27599531 27599831 -73780690 - AluSx SINE Alu -12 300 1 312 91 0 0 chr15 27600178 27600222 -73780299 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 2411 82 7 7 chr15 27602509 27602815 -73777706 + AluY SINE Alu 1 306 -5 310 287 73 7 chr15 27602822 27602958 -73777563 + MIR SINE MIR 48 192 -70 246 338 119 0 chr15 27603887 27604038 -73776483 + MIR3 SINE MIR 31 199 -9 228 307 79 18 chr15 27604045 27604159 -73776362 + L2 LINE L2 3188 3308 -5 431 233 103 27 chr15 27605776 27605922 -73774599 + MIR SINE MIR 36 192 -70 180 235 78 0 chr15 27606944 27606995 -73773526 + MIR SINE MIR 95 149 -59 207 0 0 0 chr15 27607130 27607153 -73773368 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 183 200 0 0 chr15 27607482 27607522 -73772999 + MIR SINE MIR 106 145 -117 1921 132 0 45 chr15 27608049 27608359 -73772162 + AluSx SINE Alu 2 297 -15 225 250 102 0 chr15 27608410 27608498 -73772023 + MIR SINE MIR 96 192 -70 943 169 0 18 chr15 27609204 27609370 -73771151 + 7SLRNA srpRNA srpRNA 95 257 -63 207 69 0 0 chr15 27610494 27610523 -73769998 + (TGGGGG)n Simple_repeat Simple_repeat 6 34 0 394 178 40 103 chr15 27610864 27611038 -73769483 - L1MC5 LINE L1 -141 7820 7658 1288 144 9 107 chr15 27611696 27611924 -73768597 - AluJb SINE Alu 0 312 128 1687 164 0 29 chr15 27611924 27612236 -73768285 + AluSp SINE Alu 1 303 -10 1288 144 9 107 chr15 27612236 27612353 -73768168 - AluJb SINE Alu -184 128 1 1578 168 6 50 chr15 27612381 27612702 -73767819 + AluSp SINE Alu 1 307 -6 590 159 9 9 chr15 27612704 27612817 -73767704 - AluJb SINE Alu -198 114 2 1551 168 6 47 chr15 27612846 27613167 -73767354 + AluSp SINE Alu 1 308 -5 780 219 8 80 chr15 27613192 27613306 -73767215 - AluJb SINE Alu -90 222 132 1696 176 3 3 chr15 27613306 27613618 -73766903 + AluSp SINE Alu 1 312 -1 780 219 8 80 chr15 27613618 27613741 -73766780 - AluJb SINE Alu -180 132 2 264 108 0 0 chr15 27613770 27613807 -73766714 + AluSp SINE Alu 1 37 -265 2475 164 38 19 chr15 27613838 27614314 -73766207 - LTR15 LTR ERV1 -7 486 2 838 129 5 118 chr15 27614315 27614501 -73766020 + AluSp SINE Alu 28 192 -121 392 254 124 25 chr15 27614502 27614549 -73765972 - L1MC4a LINE L1 -1866 5942 5901 1429 181 3 60 chr15 27614549 27614863 -73765658 - AluJb SINE Alu -16 296 1 392 254 124 25 chr15 27614863 27615016 -73765505 - L1MC4a LINE L1 -1907 5901 5722 314 236 133 33 chr15 27615126 27615358 -73765163 + L1ME4a LINE L1 5255 5395 -767 349 299 64 34 chr15 27615428 27615705 -73764816 + L1ME4a LINE L1 5650 5934 -206 411 84 0 99 chr15 27615753 27615824 -73764697 + AluSx SINE Alu 2 65 -248 7581 92 8 21 chr15 27615824 27616893 -73763628 - MER11C LTR ERVK -15 1056 1 1568 117 95 0 chr15 27616893 27617124 -73763397 + AluSx SINE Alu 49 301 -11 280 239 287 30 chr15 27617447 27617614 -73762907 + L2 LINE L2 3084 3293 -20 914 173 25 27 chr15 27618254 27618441 -73762080 - L1MC3 LINE L1 -2 7765 6196 350 246 146 15 chr15 27619659 27619789 -73760732 + MER103 DNA DNA 8 154 -12 231 231 147 22 chr15 27620020 27620155 -73760366 + MER5A DNA MER1_type 3 167 -15 2374 54 0 0 chr15 27620473 27620789 -73759732 - AluY SINE Alu 0 316 1 328 303 86 12 chr15 27621169 27621331 -73759190 + L1ME3A LINE L1 4102 4275 -1871 2512 239 40 29 chr15 27623286 27624044 -73756477 + L1ME3A LINE L1 5403 6168 -2 180 0 0 0 chr15 27624229 27624249 -73756272 + (TTCCC)n Simple_repeat Simple_repeat 5 24 0 2331 75 0 3 chr15 27624885 27625188 -73755333 - AluY SINE Alu 0 302 1 2345 65 41 0 chr15 27625927 27626221 -73754300 - AluY SINE Alu -5 306 1 3258 220 62 52 chr15 27627406 27627676 -73752845 - L1ME1 LINE L1 -5 6161 5895 2023 147 0 3 chr15 27627676 27627989 -73752532 - AluJb SINE Alu 0 312 1 3258 220 62 52 chr15 27627989 27629574 -73750947 - L1ME1 LINE L1 -271 5895 4295 204 300 0 0 chr15 27629667 27629727 -73750794 + MIR SINE MIR 59 118 -144 2527 201 117 23 chr15 27629827 27631072 -73749449 - L1MD2 LINE L1 -449 5910 4552 2432 60 10 3 chr15 27632962 27633263 -73747258 + AluY SINE Alu 1 303 -8 522 297 116 12 chr15 27633280 27633539 -73746982 + MER46C DNA MER2_type 2 287 -51 258 262 16 0 chr15 27634397 27634458 -73746063 + MER46C DNA MER2_type 1 62 -276 256 218 52 56 chr15 27634818 27634944 -73745577 - MIR SINE MIR -70 138 17 22 0 0 0 chr15 27635209 27635231 -73745290 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 27635451 27635473 -73745048 + AT_rich Low_complexity Low_complexity 1 22 0 2117 131 0 3 chr15 27635835 27636133 -73744388 - AluSx SINE Alu -11 301 5 2291 99 3 3 chr15 27636144 27636447 -73744074 - AluSp SINE Alu -10 303 1 959 217 57 62 chr15 27637498 27637886 -73742635 - L1MC5 LINE L1 -724 7237 6876 1127 136 0 0 chr15 27638057 27638211 -73742310 - FRAM SINE Alu -26 150 1 24 32 0 0 chr15 27638444 27638475 -73742046 + AT_rich Low_complexity Low_complexity 1 31 0 1745 154 3 10 chr15 27640081 27640374 -73740147 - AluJo SINE Alu -21 291 1 1437 184 42 4 chr15 27640496 27640757 -73739764 - AluJb SINE Alu -41 271 1 588 291 32 77 chr15 27640831 27641144 -73739377 + L2 LINE L2 2431 2729 -585 207 305 0 0 chr15 27641168 27641227 -73739294 + CT-rich Low_complexity Low_complexity 1 59 0 292 204 0 0 chr15 27642538 27642592 -73737929 - MER58 DNA MER1_type -117 224 171 195 216 255 10 chr15 27643063 27643165 -73737356 + L2 LINE L2 3143 3269 -3 2204 102 3 0 chr15 27644405 27644698 -73735823 + AluY SINE Alu 1 294 -17 2023 62 0 0 chr15 27646035 27646276 -73734245 + AluSg SINE Alu 1 241 -69 2359 79 0 26 chr15 27647154 27647457 -73733064 - AluSq SINE Alu -18 295 1 2167 107 30 0 chr15 27647585 27647884 -73732637 + AluSx SINE Alu 1 308 -4 313 253 93 84 chr15 27648261 27648315 -73732206 - L1M4 LINE L1 -2218 3928 3876 2365 81 0 44 chr15 27648315 27648635 -73731886 - AluSg SINE Alu -4 306 1 313 253 93 84 chr15 27648635 27648817 -73731704 - L1M4 LINE L1 -2270 3876 3690 777 220 154 76 chr15 27648822 27649231 -73731290 - MLT1F1 LTR MaLR -58 509 69 674 174 68 0 chr15 27649237 27649369 -73731152 - Tigger1 DNA MER2_type -1 2417 2277 * 11328 121 29 16 chr15 27649362 27649650 -73730871 - Tigger1 DNA MER2_type -655 1763 1480 1543 70 10 5 chr15 27649650 27649850 -73730671 - AluY SINE Alu -1 310 110 11328 121 29 16 chr15 27649850 27651301 -73729220 - Tigger1 DNA MER2_type -938 1480 1 954 205 144 5 chr15 27651818 27652013 -73728508 - MER58A DNA MER1_type -2 222 1 1546 160 125 12 chr15 27653646 27653902 -73726619 + AluJo SINE Alu 1 285 -17 418 16 66 0 chr15 27653902 27653963 -73726558 + (AAATG)n Simple_repeat Simple_repeat 1 65 0 423 127 0 0 chr15 27653963 27654018 -73726503 + AluJ/FRAM SINE Alu 226 280 -32 232 0 105 0 chr15 27654020 27654058 -73726463 + (AAATG)n Simple_repeat Simple_repeat 2 43 0 413 127 0 0 chr15 27654059 27654114 -73726407 + AluJ/FRAM SINE Alu 226 280 -32 474 14 57 0 chr15 27654123 27654193 -73726328 + (AAATG)n Simple_repeat Simple_repeat 1 74 0 402 132 0 0 chr15 27654193 27654246 -73726275 + AluJ/FRAM SINE Alu 226 278 -34 196 0 118 0 chr15 27654262 27654296 -73726225 + (AAATG)n Simple_repeat Simple_repeat 1 38 0 356 167 0 0 chr15 27654296 27654350 -73726171 + AluJ/FRAM SINE Alu 226 279 -23 273 0 106 0 chr15 27654350 27654397 -73726124 + (AAATG)n Simple_repeat Simple_repeat 1 52 0 369 206 27 0 chr15 27654397 27654470 -73726051 + AluJ/FRAM SINE Alu 226 300 -2 246 43 85 0 chr15 27654474 27654521 -73726000 + (AAATG)n Simple_repeat Simple_repeat 5 55 0 421 125 0 0 chr15 27654527 27654583 -73725938 + AluJ/FRAM SINE Alu 225 280 -32 282 0 104 0 chr15 27654585 27654633 -73725888 + (AAATG)n Simple_repeat Simple_repeat 1 53 0 351 164 0 0 chr15 27654633 27654688 -73725833 + AluJ/FRAM SINE Alu 226 280 -22 232 25 75 0 chr15 27654690 27654730 -73725791 + (AAATG)n Simple_repeat Simple_repeat 1 43 0 350 130 0 19 chr15 27654730 27654784 -73725737 + AluJ/FRAM SINE Alu 226 278 -24 325 20 61 0 chr15 27654800 27654849 -73725672 + (AAATG)n Simple_repeat Simple_repeat 2 53 0 365 164 0 0 chr15 27654850 27654905 -73725616 + AluJ/FRAM SINE Alu 226 280 -22 381 32 65 0 chr15 27654909 27654971 -73725550 + (AAATG)n Simple_repeat Simple_repeat 1 66 0 423 219 0 0 chr15 27654971 27655053 -73725468 + AluJ/FRAM SINE Alu 226 307 -5 431 140 0 0 chr15 27655081 27655138 -73725383 + AluJ/FRAM SINE Alu 225 281 -31 494 12 96 0 chr15 27655139 27655222 -73725299 + (AAATG)n Simple_repeat Simple_repeat 2 92 0 423 127 0 0 chr15 27655223 27655278 -73725243 + AluJ/FRAM SINE Alu 226 280 -32 215 0 67 0 chr15 27655280 27655310 -73725211 + (AAATG)n Simple_repeat Simple_repeat 2 33 0 338 93 0 0 chr15 27655311 27655354 -73725167 + Alu SINE Alu 225 267 -34 * 372 177 0 18 chr15 27655332 27655364 -73725157 + AluJ/FRAM SINE Alu 226 226 -76 306 19 94 0 chr15 27655364 27655417 -73725104 + (AAATG)n Simple_repeat Simple_repeat 1 58 0 372 177 0 18 chr15 27655417 27655470 -73725051 + AluJ/FRAM SINE Alu 226 278 -24 327 0 94 0 chr15 27655486 27655539 -73724982 + (AAATG)n Simple_repeat Simple_repeat 1 58 0 365 164 0 0 chr15 27655539 27655594 -73724927 + AluJ/FRAM SINE Alu 226 280 -22 202 0 91 0 chr15 27655598 27655631 -73724890 + (AAATG)n Simple_repeat Simple_repeat 1 36 0 355 233 0 0 chr15 27655631 27655704 -73724817 + AluJ/FRAM SINE Alu 226 298 -4 357 18 70 0 chr15 27655708 27655765 -73724756 + (AAATG)n Simple_repeat Simple_repeat 5 65 0 410 143 0 0 chr15 27655771 27655827 -73724694 + AluJ/FRAM SINE Alu 225 280 -32 331 0 82 0 chr15 27655829 27655878 -73724643 + (AAATG)n Simple_repeat Simple_repeat 1 53 0 363 191 0 0 chr15 27655878 27655941 -73724580 + AluJ/FRAM SINE Alu 226 288 -14 379 26 117 0 chr15 27655941 27656018 -73724503 + (AAATG)n Simple_repeat Simple_repeat 2 87 0 410 143 0 0 chr15 27656018 27656074 -73724447 + AluJ/FRAM SINE Alu 225 280 -32 306 19 94 0 chr15 27656076 27656129 -73724392 + (AAATG)n Simple_repeat Simple_repeat 1 58 0 357 151 0 0 chr15 27656129 27656182 -73724339 + AluJ/FRAM SINE Alu 226 278 -24 269 26 26 0 chr15 27656198 27656236 -73724285 + (AAATG)n Simple_repeat Simple_repeat 5 43 0 365 164 0 0 chr15 27656243 27656298 -73724223 + AluJ/FRAM SINE Alu 226 280 -22 316 21 62 0 chr15 27656302 27656350 -73724171 + (AAATG)n Simple_repeat Simple_repeat 1 51 0 423 127 0 0 chr15 27656350 27656405 -73724116 + AluJ/FRAM SINE Alu 226 280 -32 518 15 30 0 chr15 27656407 27656473 -73724048 + (AAATG)n Simple_repeat Simple_repeat 1 68 0 373 146 0 0 chr15 27656473 27656528 -73723993 + AluJ/FRAM SINE Alu 226 280 -22 506 24 73 0 chr15 27656530 27656612 -73723909 + (AAATG)n Simple_repeat Simple_repeat 1 88 0 423 127 0 0 chr15 27656612 27656667 -73723854 + AluJ/FRAM SINE Alu 226 280 -32 362 16 81 0 chr15 27656667 27656729 -73723792 + (AAATG)n Simple_repeat Simple_repeat 1 67 0 229 250 0 0 chr15 27656735 27656791 -73723730 + L1MEc LINE L1 135 190 -6206 1616 88 92 11 chr15 27656802 27657063 -73723458 + L1MA3 LINE L1 6024 6305 0 1433 247 126 14 chr15 27657082 27657592 -73722929 + L1MEc LINE L1 184 750 -5646 44468 46 5 1 chr15 27657610 27663741 -73716780 - L1PA4 LINE L1 0 6155 2 201 74 0 0 chr15 27663775 27663802 -73716719 + (A)n Simple_repeat Simple_repeat 1 27 0 1451 212 61 5 chr15 27663869 27664529 -73715992 + ERVL-D LTR ERVL 1069 1791 -3894 1781 239 36 36 chr15 27664691 27665278 -73715243 - L1MC3 LINE L1 -709 7076 6490 980 222 43 0 chr15 27665601 27665808 -73714713 - MER58A DNA MER1_type 0 224 9 1580 98 98 70 chr15 27666087 27666372 -73714149 - AluSx SINE Alu -19 293 1 289 359 36 24 chr15 27666874 27667041 -73713480 + MIR SINE MIR 20 188 -74 405 273 49 33 chr15 27667260 27667443 -73713078 - L2 LINE L2 0 3313 3128 1815 176 22 6 chr15 27667873 27668236 -73712285 - LTR57 LTR ERVL -40 371 3 1079 209 25 0 chr15 27668239 27668474 -73712047 + ERVL-D LTR ERVL 1788 2028 -3657 1574 218 33 3 chr15 27668474 27668805 -73711716 - MLT1A1 LTR MaLR 0 365 25 3870 213 41 63 chr15 27668810 27669328 -73711193 - MLT1A1-int LTR MaLR -636 1099 571 204 40 0 0 chr15 27669328 27669353 -73711168 + (TTCTCC)n Simple_repeat Simple_repeat 3 27 0 1571 196 0 41 chr15 27669353 27669644 -73710877 - AluJo SINE Alu -31 281 3 3870 213 41 63 chr15 27669644 27670245 -73710276 - MLT1A1-int LTR MaLR -1162 573 4 1596 224 9 3 chr15 27670249 27670598 -73709923 - MLT1A1 LTR MaLR 0 365 15 904 282 57 4 chr15 27670608 27670888 -73709633 + ERVL-D LTR ERVL 3130 3424 -2261 737 244 38 14 chr15 27670899 27671108 -73709413 + ERVL-D LTR ERVL 3536 3749 -1936 592 187 168 0 chr15 27671739 27671894 -73708627 + LTR47A LTR ERVL 261 441 -11 3692 197 30 77 chr15 27671894 27672945 -73707576 + ERVL-D LTR ERVL 3875 4876 -809 630 202 229 0 chr15 27672945 27673133 -73707388 + LTR39 LTR ERV1 1 231 -552 2494 84 0 0 chr15 27673145 27673454 -73707067 - AluY SINE Alu 0 311 3 2308 92 7 0 chr15 27673472 27673775 -73706746 - AluSx SINE Alu -7 305 1 384 303 66 31 chr15 27673801 27674283 -73706238 + L1M4 LINE L1 3256 3754 -2392 1413 277 41 76 chr15 27674455 27675210 -73705311 - L1M4 LINE L1 -5043 1812 1103 2504 63 0 0 chr15 27675210 27675512 -73705009 + AluY SINE Alu 1 302 -9 1413 277 41 76 chr15 27675512 27675808 -73704713 - L1M4 LINE L1 -5752 1103 798 251 319 60 0 chr15 27675824 27675940 -73704581 - L1M4 LINE L1 -6037 822 700 357 252 71 76 chr15 27675946 27676092 -73704429 - L1M4 LINE L1 -6618 241 95 2578 66 0 0 chr15 27676092 27676397 -73704124 + AluY SINE Alu 1 305 -6 357 252 71 76 chr15 27676397 27676460 -73704061 - L1M4 LINE L1 -6764 95 33 1313 214 12 69 chr15 27676994 27677597 -73702924 - MLT2B1 LTR ERVL 0 520 1 10447 191 14 5 chr15 27677597 27679670 -73700851 - ERVL-B1 LTR ERVL -7 5757 3668 2572 230 15 18 chr15 27679688 27679839 -73700682 + ERVL-D LTR ERVL 1777 1927 -3837 2160 132 0 6 chr15 27679839 27680150 -73700371 - AluSg SINE Alu -1 309 1 2572 230 15 18 chr15 27680150 27680597 -73699924 + ERVL-D LTR ERVL 1927 2373 -3391 1203 251 50 19 chr15 27680602 27681020 -73699501 + L1M4 LINE L1 4708 5138 -1008 * 1903 175 95 5 chr15 27681001 27681412 -73699109 + L1MC1 LINE L1 5877 6324 -9 2385 65 31 0 chr15 27681419 27681713 -73698808 + AluY SINE Alu 1 303 -8 9097 216 42 7 chr15 27681713 27683726 -73696795 + ERVL-D LTR ERVL 2367 4451 -1313 2029 222 40 2 chr15 27683716 27684215 -73696306 + ERVL-D LTR ERVL 4918 5435 -329 * 217 123 62 31 chr15 27684215 27684280 -73696241 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 1404 164 37 7 chr15 27684317 27684615 -73695906 + ERVL-D LTR ERVL 5451 5757 -7 657 193 40 0 chr15 27684618 27684768 -73695753 + MLT2D LTR ERVL 5 160 -254 2058 150 106 10 chr15 27684774 27685161 -73695360 + MSTB1 LTR MaLR 9 432 0 452 182 0 0 chr15 27685161 27685238 -73695283 + MLT2C1 LTR ERVL 155 231 -166 * 1152 220 43 69 chr15 27685237 27685655 -73694866 - MLT1C LTR MaLR -58 409 3 2154 64 4 4 chr15 27685679 27685989 -73694532 + AluY SINE Alu 1 310 0 201 343 29 0 chr15 27686858 27686928 -73693593 + L2 LINE L2 3186 3257 -15 1488 163 22 47 chr15 27687543 27687863 -73692658 - AluJo SINE Alu 0 312 1 243 304 247 15 chr15 27690550 27690813 -73689708 + L3 LINE CR1 1244 1567 -10 207 391 45 30 chr15 27691218 27691351 -73689170 - L2 LINE L2 -44 3228 3094 763 224 84 70 chr15 27693527 27693826 -73686695 + L2 LINE L2 3008 3310 -3 440 297 94 42 chr15 27695160 27695372 -73685149 - MIR SINE MIR -26 236 14 387 0 0 0 chr15 27695411 27695454 -73685067 + (TG)n Simple_repeat Simple_repeat 2 44 0 257 371 64 50 chr15 27695728 27695868 -73684653 - L2 LINE L2 -5 3267 3126 22 35 0 0 chr15 27696705 27696734 -73683787 + AT_rich Low_complexity Low_complexity 1 29 0 202 241 161 46 chr15 27698839 27698926 -73681595 + MER5B DNA MER1_type 3 99 -79 521 273 119 92 chr15 27699760 27700097 -73680424 - L1M4 LINE L1 -1972 4174 3829 384 77 0 0 chr15 27700296 27700348 -73680173 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 2117 89 3 28 chr15 27700348 27700639 -73679882 - AluY SINE Alu -26 285 2 740 133 0 16 chr15 27700783 27700911 -73679610 + MER3 DNA MER1_type 67 192 -17 2180 93 7 23 chr15 27702448 27702748 -73677773 + AluSx SINE Alu 1 295 -17 216 67 0 0 chr15 27702940 27702970 -73677551 + (GGA)n Simple_repeat Simple_repeat 3 32 0 30 45 0 0 chr15 27703211 27703255 -73677266 + AT_rich Low_complexity Low_complexity 1 44 0 810 230 90 22 chr15 27703302 27703667 -73676854 - L1MC5 LINE L1 -304 7657 7268 442 257 104 25 chr15 27703831 27704072 -73676449 - L1MC5 LINE L1 -745 7216 6957 493 329 69 83 chr15 27706114 27706270 -73674251 + L2 LINE L2 2842 2999 -273 2068 101 61 0 chr15 27706270 27706548 -73673973 - AluSx SINE Alu -17 295 1 493 329 69 83 chr15 27706548 27706826 -73673695 + L2 LINE L2 2999 3270 -2 641 316 53 4 chr15 27707299 27707546 -73672975 + L2 LINE L2 2815 3073 -240 537 214 0 0 chr15 27707637 27707740 -73672781 + U6 snRNA snRNA 4 106 -1 2297 81 0 3 chr15 27708421 27708719 -73671802 + AluSg SINE Alu 3 299 -11 363 250 173 10 chr15 27708962 27709066 -73671455 + L2 LINE L2 3193 3313 0 1122 224 97 24 chr15 27710456 27710836 -73669685 - L1MD2 LINE L1 -13 6346 5939 2311 102 0 0 chr15 27710899 27711192 -73669329 + AluSx SINE Alu 1 293 -19 563 198 78 0 chr15 27711204 27711320 -73669201 + FLAM_C SINE Alu 1 125 -18 1369 205 31 14 chr15 27711330 27711623 -73668898 + AluJo SINE Alu 1 298 -14 334 194 9 4 chr15 27711668 27711776 -73668745 + Tigger5 DNA MER2_type 44 199 -2124 2156 105 24 0 chr15 27712190 27712485 -73668036 + AluSx SINE Alu 1 302 -10 1807 172 30 15 chr15 27712910 27713247 -73667274 - MER2 DNA MER2_type -1 343 2 2306 95 0 3 chr15 27713305 27713601 -73666920 - AluSx SINE Alu -17 295 1 1471 150 213 8 chr15 27713912 27714312 -73666209 - L1MB7 LINE L1 0 6184 5703 * 1897 217 120 17 chr15 27714310 27715058 -73665463 - L1M4 LINE L1 -1638 4508 3638 391 182 0 0 chr15 27717756 27717822 -73662699 - MER92C LTR ERV1 0 554 489 255 300 33 11 chr15 27717917 27718007 -73662514 - MER92C LTR ERV1 -462 92 1 1152 161 0 0 chr15 27718008 27718182 -73662339 + AluJb SINE Alu 109 282 -30 1907 159 7 3 chr15 27718964 27719260 -73661261 - AluJb SINE Alu -15 297 1 2392 86 0 13 chr15 27719404 27719707 -73660814 - AluSg SINE Alu -11 299 1 21 0 0 0 chr15 27720891 27720912 -73659609 + AT_rich Low_complexity Low_complexity 1 21 0 2265 88 3 14 chr15 27725790 27726087 -73654434 - AluY SINE Alu -17 294 1 2225 103 0 19 chr15 27726229 27726539 -73653982 + AluSx SINE Alu 1 304 -8 1900 189 88 8 chr15 27727007 27727394 -73653127 + MER47B DNA MER2_type 1 418 0 207 260 87 104 chr15 27727539 27727712 -73652809 + L2 LINE L2 2856 3025 -288 213 182 45 0 chr15 27727795 27727839 -73652682 + L2 LINE L2 3196 3241 -72 457 261 238 17 chr15 27727841 27728300 -73652221 + L1MEc LINE L1 1113 1672 -4724 1210 112 77 0 chr15 27728303 27728499 -73652022 + MER2 DNA MER2_type 1 211 -134 460 248 58 15 chr15 27728614 27728649 -73651872 + L1MEc LINE L1 1675 1707 -4689 1848 168 0 7 chr15 27728649 27728947 -73651574 - AluJb SINE Alu 0 312 17 460 248 58 15 chr15 27728947 27729048 -73651473 + L1MEc LINE L1 1707 1817 -4579 629 233 149 4 chr15 27729053 27729302 -73651219 + L1MEc LINE L1 1856 2140 -4256 987 185 11 38 chr15 27729308 27729492 -73651029 + AluJb SINE Alu 1 179 -133 4487 228 99 18 chr15 27729492 27729948 -73650573 + L1MEc LINE L1 2168 2585 -3630 1582 162 86 14 chr15 27729948 27730238 -73650283 + AluJb SINE Alu 1 311 -1 4487 228 99 18 chr15 27730238 27730967 -73649554 + L1MEc LINE L1 2585 3492 -2723 2080 114 13 35 chr15 27730967 27731284 -73649237 + AluSx SINE Alu 1 310 -2 4487 228 99 18 chr15 27731284 27731633 -73648888 + L1MEc LINE L1 3492 3811 -2404 2799 209 75 26 chr15 27731670 27731745 -73648776 + L1MB4 LINE L1 4540 4610 -1536 2448 80 0 0 chr15 27731745 27732047 -73648474 - AluY SINE Alu -9 302 1 2799 209 75 26 chr15 27732047 27732707 -73647814 + L1MB4 LINE L1 4610 5311 -835 1374 52 29 0 chr15 27732780 27732954 -73647567 - L1MA1 LINE L1 -6 6296 6118 451 232 99 91 chr15 27732974 27733244 -73647277 + MLT1E LTR MaLR 41 312 -255 459 40 100 24 chr15 27733928 27734180 -73646341 + (TA)n Simple_repeat Simple_repeat 1 271 0 * 476 91 57 34 chr15 27734144 27734319 -73646202 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 231 68 54 40 chr15 27734358 27734432 -73646089 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 283 194 0 42 chr15 27734437 27734509 -73646012 + (TA)n Simple_repeat Simple_repeat 2 70 0 306 0 0 0 chr15 27735444 27735478 -73645043 + (CA)n Simple_repeat Simple_repeat 1 34 0 206 279 98 74 chr15 27735694 27735816 -73644705 - MER5A DNA MER1_type 0 189 65 821 156 0 0 chr15 27736758 27736886 -73643635 - AluJb SINE Alu -13 299 172 461 152 0 0 chr15 27736886 27736952 -73643569 - AluJ/FLAM SINE Alu -244 68 3 2851 204 63 26 chr15 27739428 27740153 -73640368 + L1MB4 LINE L1 5428 6179 -1 1877 142 3 65 chr15 27742878 27743201 -73637320 + AluJb SINE Alu 1 303 -9 1583 190 36 18 chr15 27743667 27743998 -73636523 + MER58B DNA MER1_type 5 341 0 2426 150 17 74 chr15 27744056 27744268 -73636253 + Tigger2a DNA MER2_type 1 223 -2485 2280 118 7 0 chr15 27744268 27744574 -73635947 - AluSx SINE Alu -4 308 1 2431 71 10 0 chr15 27744582 27744879 -73635642 - AluSp SINE Alu -8 305 6 2426 150 17 74 chr15 27744879 27745117 -73635404 + Tigger2a DNA MER2_type 230 434 0 222 118 0 0 chr15 27746105 27746139 -73634382 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 304 279 162 35 chr15 27746570 27746946 -73633575 + L2 LINE L2 2187 2610 -704 382 330 118 9 chr15 27746946 27747295 -73633226 + L2 LINE L2 2884 3270 -2 414 239 157 0 chr15 27747578 27747712 -73632809 - MIR SINE MIR 0 262 108 4558 93 27 37 chr15 27748245 27748375 -73632146 - L1MA5 LINE L1 -2 6298 6168 710 225 0 0 chr15 27748375 27748495 -73632026 - FLAM_A SINE Alu -13 120 1 4558 93 27 37 chr15 27748495 27749073 -73631448 - L1MA5 LINE L1 -132 6168 5597 1998 125 30 13 chr15 27749317 27749620 -73630901 + AluJb SINE Alu 1 308 -4 2303 138 12 0 chr15 27750603 27750937 -73629584 - MER1B DNA MER1_type 0 339 2 1038 154 109 25 chr15 27751097 27751298 -73629223 - MER20 DNA MER1_type 0 219 2 472 219 18 0 chr15 27751332 27751446 -73629075 + ERVL LTR ERVL 2291 2406 -3358 2392 98 0 0 chr15 27751903 27752200 -73628321 - AluSg SINE Alu -13 297 1 21 36 0 0 chr15 27753377 27753405 -73627116 + AT_rich Low_complexity Low_complexity 1 28 0 543 338 113 5 chr15 27753904 27754321 -73626200 - L2 LINE L2 -1 3312 2851 2343 77 18 0 chr15 27755132 27755418 -73625103 - AluSp SINE Alu -22 291 1 2402 96 0 0 chr15 27756433 27756746 -73623775 - AluSq SINE Alu 0 313 1 916 170 0 30 chr15 27756748 27756913 -73623608 + AluJo/FRAM SINE Alu 148 307 -5 796 202 91 29 chr15 27760593 27760738 -73619783 + MER63 DNA MER1_type 838 1001 -60 2538 75 0 0 chr15 27760738 27761046 -73619475 - AluY SINE Alu -3 308 1 796 202 91 29 chr15 27761046 27761108 -73619413 + MER63 DNA MER1_type 1001 1058 -3 196 398 8 8 chr15 27761116 27761239 -73619282 + L2 LINE L2 3191 3313 0 584 235 121 95 chr15 27761279 27761691 -73618830 - L2 LINE L2 -5 3308 2886 934 225 6 0 chr15 27761739 27761921 -73618600 - MER58A DNA MER1_type 0 224 42 345 222 159 16 chr15 27761956 27762082 -73618439 - L2 LINE L2 -504 2810 2667 2350 85 3 0 chr15 27762088 27762381 -73618140 + AluY SINE Alu 1 294 -17 1729 215 80 5 chr15 27762381 27762804 -73617717 + L1MB5 LINE L1 5598 6052 -122 2144 120 10 0 chr15 27763285 27763577 -73616944 + AluSx SINE Alu 2 296 -16 483 208 88 0 chr15 27764559 27764684 -73615837 + L1MC3 LINE L1 5195 5330 -816 1802 206 57 4 chr15 27764687 27765347 -73615174 + L1MD2 LINE L1 4849 5545 -743 1001 146 11 22 chr15 27765370 27765548 -73614973 + L1MD1 LINE L1 6062 6237 -5 2527 186 38 55 chr15 27765548 27765598 -73614923 + L1MC3 LINE L1 5317 5366 -978 2446 62 0 10 chr15 27765598 27765907 -73614614 + AluY SINE Alu 1 306 -5 2527 186 38 55 chr15 27765907 27766508 -73614013 + L1MC3 LINE L1 5366 5572 -772 624 154 31 15 chr15 27766661 27766791 -73613730 - AluSp SINE Alu -180 133 2 593 152 18 9 chr15 27766819 27766931 -73613590 + AluJb SINE Alu 2 114 -198 1583 158 0 45 chr15 27766933 27767243 -73613278 - AluSp SINE Alu -17 296 1 873 98 30 0 chr15 27767250 27767382 -73613139 - AluSp SINE Alu -177 136 1 917 196 11 0 chr15 27767412 27767601 -73612920 + AluJb SINE Alu 118 308 -4 1445 98 0 0 chr15 27768752 27768936 -73611585 + AluSx SINE Alu 2 185 -127 1903 234 67 38 chr15 27769059 27769101 -73611420 + L1MD2 LINE L1 5551 5590 -769 180 0 0 0 chr15 27769101 27769121 -73611400 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1903 234 67 38 chr15 27769121 27769412 -73611109 + L1MD2 LINE L1 5590 5912 -447 2183 89 0 3 chr15 27769412 27769732 -73610789 + AluSc SINE Alu 1 319 0 1903 234 67 38 chr15 27769732 27769978 -73610543 + L1MD2 LINE L1 5912 6149 -210 469 173 0 0 chr15 27770181 27770260 -73610261 - MER2 DNA MER2_type -135 210 132 1594 159 5 66 chr15 27770260 27770683 -73609838 - MER1B DNA MER1_type 0 339 3 706 182 8 0 chr15 27770690 27770811 -73609710 - MER2 DNA MER2_type -222 123 2 370 203 8 73 chr15 27770812 27770935 -73609586 + L1MD3 LINE L1 7868 7982 -13 2564 58 3 0 chr15 27770935 27771243 -73609278 + AluY SINE Alu 1 309 -2 1877 146 182 17 chr15 27772270 27772632 -73607889 + MSTB LTR MaLR 5 426 0 2436 60 0 0 chr15 27773031 27773348 -73607173 + AluY SINE Alu 1 317 0 2302 289 166 39 chr15 27773975 27775377 -73605144 + L2 LINE L2 285 1864 -1450 1820 225 3 11 chr15 27775433 27775793 -73604728 + MLT1A1 LTR MaLR 1 357 -8 2855 187 8 14 chr15 27775793 27776306 -73604215 + MLT1A1-int LTR MaLR 3 512 -1223 2186 109 10 3 chr15 27776328 27776631 -73603890 + AluSx SINE Alu 1 305 -7 1009 191 109 18 chr15 27776634 27776896 -73603625 - MLT-int LTR MaLR -155 1496 1222 987 235 19 103 chr15 27777019 27777338 -73603183 - MLT-int LTR MaLR -945 790 499 * 2560 176 17 38 chr15 27777330 27777864 -73602657 + L1MA2 LINE L1 3938 4460 -1686 4587 126 18 119 chr15 27777864 27779404 -73601117 - pTR5 LTR ERV1 0 2606 1524 1313 150 20 4 chr15 27779404 27779650 -73600871 + L1MA2 LINE L1 4457 4706 -1440 5289 146 20 12 chr15 27781073 27782248 -73598273 + L1MA2 LINE L1 4696 5891 -413 1910 153 60 38 chr15 27782248 27782613 -73597908 + THE1C LTR MaLR 1 373 -2 5289 146 20 12 chr15 27782613 27782799 -73597722 + L1MA2 LINE L1 5891 6074 -230 22 0 0 0 chr15 27782880 27782902 -73597619 + AT_rich Low_complexity Low_complexity 1 22 0 840 304 143 25 chr15 27782945 27783435 -73597086 + L2 LINE L2 2179 2726 -588 434 183 17 52 chr15 27783505 27783620 -73596901 + MER3 DNA MER1_type 97 207 -2 798 203 0 0 chr15 27783766 27783904 -73596617 + MLT1A1 LTR MaLR 228 365 0 228 214 0 0 chr15 27783906 27783948 -73596573 - L1MEc LINE L1 -6314 82 41 1209 170 44 22 chr15 27784248 27784477 -73596044 - MLT1A1 LTR MaLR -129 236 3 2765 281 81 37 chr15 27784478 27784553 -73595968 + L1MEc LINE L1 79 149 -6247 1571 199 40 70 chr15 27784553 27784955 -73595566 - MLT1B LTR MaLR 0 390 1 2765 281 81 37 chr15 27784955 27785254 -73595267 + L1MEc LINE L1 149 434 -5962 2650 206 63 34 chr15 27785254 27785838 -73594683 - MER77 LTR ERV1 -4 601 1 2765 281 81 37 chr15 27785838 27786119 -73594402 + L1MEc LINE L1 434 701 -5695 5073 164 44 1 chr15 27786119 27787478 -73593043 + L1PA16 LINE L1 4766 6158 -8 2765 281 81 37 chr15 27787478 27787492 -73593029 + L1MEc LINE L1 701 713 -5683 1534 196 95 9 chr15 27787492 27787828 -73592693 + MLT1A1 LTR MaLR 1 365 0 2765 281 81 37 chr15 27787828 27788243 -73592278 + L1MEc LINE L1 713 1239 -5157 2392 90 0 3 chr15 27788243 27788555 -73591966 + AluY SINE Alu 1 311 0 2765 281 81 37 chr15 27788555 27788831 -73591690 + L1MEc LINE L1 1239 1502 -4894 255 132 0 0 chr15 27788930 27788968 -73591553 + Alu SINE Alu 5 42 -260 376 278 135 8 chr15 27889972 27890105 -73490416 - MIR SINE MIR -49 213 64 398 272 233 29 chr15 27890129 27890335 -73490186 - MIR SINE MIR -5 257 10 1447 182 42 6 chr15 27890354 27890667 -73489854 + MER33 DNA MER1_type 1 324 0 21 0 0 0 chr15 27890675 27890696 -73489825 + AT_rich Low_complexity Low_complexity 1 21 0 2170 119 0 7 chr15 27891126 27891429 -73489092 - AluSx SINE Alu -7 305 5 184 339 15 31 chr15 27894158 27894223 -73486298 + L2 LINE L2 3127 3190 -82 377 321 128 5 chr15 27894435 27894622 -73485899 - MIR SINE MIR -6 256 47 202 261 56 78 chr15 27896198 27896340 -73484181 + MIR SINE MIR 50 188 -74 180 0 0 0 chr15 27896372 27896392 -73484129 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr15 27896814 27896836 -73483685 + AT_rich Low_complexity Low_complexity 1 22 0 523 191 23 0 chr15 27896863 27896964 -73483557 + MER5A DNA MER1_type 4 106 -83 432 0 0 0 chr15 27896986 27897034 -73483487 + (TG)n Simple_repeat Simple_repeat 2 49 0 1911 112 48 0 chr15 27897201 27897489 -73483032 - AluSg SINE Alu 0 301 1 335 348 25 76 chr15 27899133 27899369 -73481152 + L2 LINE L2 3034 3257 -15 25 0 0 0 chr15 27899544 27899569 -73480952 + AT_rich Low_complexity Low_complexity 1 25 0 973 281 84 47 chr15 27901615 27902371 -73478150 + L1ME4a LINE L1 5080 5882 -239 2045 130 3 23 chr15 27902665 27902972 -73477549 - AluSx SINE Alu -11 301 1 188 343 51 51 chr15 27903065 27903202 -73477319 + L2 LINE L2 3136 3272 0 2368 76 0 10 chr15 27903666 27903968 -73476553 - AluY SINE Alu -12 299 1 793 230 158 27 chr15 27904344 27904566 -73475955 + MIR SINE MIR 12 262 0 443 289 64 32 chr15 27904666 27904679 -73475842 - MIR SINE MIR -100 162 151 536 130 13 0 chr15 27904679 27904756 -73475765 + MADE1 DNA Mariner 3 80 0 443 289 64 32 chr15 27904756 27904898 -73475623 - MIR SINE MIR -111 151 2 464 173 0 0 chr15 27904944 27905025 -73475496 - AluJo SINE Alu -2 310 230 1226 174 0 0 chr15 27905033 27905217 -73475304 - AluJo SINE Alu -123 189 6 923 204 11 27 chr15 27905586 27905772 -73474749 + MER5A DNA MER1_type 1 183 -6 367 289 88 59 chr15 27907033 27907272 -73473249 - MIR SINE MIR -6 256 11 1177 227 84 80 chr15 27907397 27907837 -73472684 - MLT1J1 LTR MaLR 0 446 5 1027 345 116 29 chr15 27908494 27909178 -73471343 + L3 LINE CR1 74 816 -761 214 305 19 38 chr15 27909321 27909426 -73471095 + L2 LINE L2 1333 1435 -1879 226 243 0 40 chr15 27910022 27910096 -73470425 + GA-rich Low_complexity Low_complexity 2 72 0 359 328 52 15 chr15 27910196 27910330 -73470191 - L2 LINE L2 -30 3242 3104 212 284 0 54 chr15 27911271 27911345 -73469176 - L2 LINE L2 -10 3262 3193 412 258 253 0 chr15 27911403 27911581 -73468940 - MIR SINE MIR -10 252 30 2238 219 158 28 chr15 27911916 27912149 -73468372 - L1MC4 LINE L1 -451 7591 7390 2472 63 0 3 chr15 27912149 27912451 -73468070 + AluY SINE Alu 1 301 -10 2238 219 158 28 chr15 27912451 27912661 -73467860 - L1MC4 LINE L1 -652 7390 7209 195 114 0 0 chr15 27912661 27912696 -73467825 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 2238 219 158 28 chr15 27912696 27912977 -73467544 - L1MC4 LINE L1 -833 7209 6771 2366 44 0 0 chr15 27913310 27913584 -73466937 - AluY SINE Alu -8 303 30 2176 107 0 0 chr15 27917300 27917581 -73462940 + AluSx SINE Alu 1 281 -31 945 147 0 0 chr15 27917445 27917581 -73462940 + AluSg/x SINE Alu 146 306 0 205 40 0 0 chr15 27917581 27917606 -73462915 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 23 0 0 0 chr15 27918112 27918135 -73462386 + AT_rich Low_complexity Low_complexity 1 23 0 2587 61 0 0 chr15 27918476 27918786 -73461735 - AluY SINE Alu -1 310 1 21 0 0 0 chr15 27919377 27919398 -73461123 + AT_rich Low_complexity Low_complexity 1 21 0 2596 64 0 0 chr15 27919577 27919888 -73460633 - AluY SINE Alu 0 311 1 278 281 10 42 chr15 27920632 27920728 -73459793 - MIR SINE MIR -56 206 114 1267 194 94 65 chr15 27920753 27921232 -73459289 + L1MC5 LINE L1 7388 7880 -81 2028 141 3 3 chr15 27921241 27921553 -73458968 - AluSx SINE Alu 0 312 1 2248 115 3 0 chr15 27921659 27921963 -73458558 + AluSp SINE Alu 3 307 -6 2063 109 0 53 chr15 27923231 27923553 -73456968 + AluSq SINE Alu 1 305 -8 431 301 44 15 chr15 27923763 27923899 -73456622 - MIR SINE MIR -120 142 3 2108 149 95 0 chr15 27923905 27924273 -73456248 - MER57A LTR ERV1 0 403 1 215 284 106 35 chr15 27924280 27924421 -73456100 + L2 LINE L2 3161 3311 -2 2413 64 0 7 chr15 27924555 27924853 -73455668 - AluY SINE Alu -15 296 1 283 250 32 105 chr15 27926200 27926324 -73454197 - L2 LINE L2 0 3313 3199 508 309 63 11 chr15 27926393 27926568 -73453953 + MIR SINE MIR 1 184 -78 2391 145 6 6 chr15 27927067 27927404 -73453117 + MER1B DNA MER1_type 1 337 0 480 290 57 45 chr15 27929434 27929610 -73450911 - MER5B DNA MER1_type 0 178 1 1809 140 51 14 chr15 27930573 27930866 -73449655 + AluJb SINE Alu 1 304 -8 420 267 61 15 chr15 27930959 27931090 -73449431 - L2 LINE L2 0 3272 3136 2059 111 4 7 chr15 27931203 27931527 -73448994 + AluSc SINE Alu 1 323 0 276 304 13 0 chr15 27931561 27931640 -73448881 - L2 LINE L2 -663 2651 2572 246 128 0 0 chr15 27932455 27932494 -73448027 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 1991 135 0 20 chr15 27933663 27933966 -73446555 + AluSx SINE Alu 1 297 -15 315 105 0 0 chr15 27933981 27934038 -73446483 + (GA)n Simple_repeat Simple_repeat 2 58 0 2615 62 0 0 chr15 27934136 27934445 -73446076 - AluY SINE Alu 0 311 3 587 311 70 4 chr15 27934678 27934906 -73445615 + MIR SINE MIR 6 248 -14 258 32 0 0 chr15 27934931 27934962 -73445559 + (CA)n Simple_repeat Simple_repeat 2 32 0 396 212 74 132 chr15 27934981 27935135 -73445386 + L1ME4a LINE L1 5769 5930 -191 195 42 0 0 chr15 27935135 27935159 -73445362 + (TC)n Simple_repeat Simple_repeat 1 24 0 396 212 74 132 chr15 27935159 27935367 -73445154 + L1ME4a LINE L1 5930 6110 -11 216 0 0 0 chr15 27935578 27935602 -73444919 + (A)n Simple_repeat Simple_repeat 1 24 0 216 0 0 0 chr15 27936211 27936235 -73444286 + (A)n Simple_repeat Simple_repeat 1 24 0 310 259 30 0 chr15 27936270 27936405 -73444116 + CT-rich Low_complexity Low_complexity 2 140 0 2659 42 0 0 chr15 27936499 27936808 -73443713 + AluY SINE Alu 1 309 -2 375 313 83 14 chr15 27936899 27937116 -73443405 - MIR SINE MIR -24 238 7 910 284 59 66 chr15 27937826 27938482 -73442039 - L1MC4a LINE L1 -345 5817 5279 235 296 28 83 chr15 27939170 27939278 -73441243 + L2 LINE L2 3190 3291 -22 * 364 226 58 58 chr15 27939277 27939414 -73441107 - L2 LINE L2 0 3313 3177 285 75 0 0 chr15 27943535 27943575 -73436946 + (TG)n Simple_repeat Simple_repeat 2 41 0 618 266 38 61 chr15 27944278 27944341 -73436180 + MIR SINE MIR 6 69 -193 2183 112 3 3 chr15 27944341 27944654 -73435867 + AluSp SINE Alu 1 313 0 618 266 38 61 chr15 27944654 27944853 -73435668 + MIR SINE MIR 69 262 0 2006 107 39 4 chr15 27944939 27945220 -73435301 + AluSg SINE Alu 1 291 -19 269 217 188 0 chr15 27947505 27947574 -73432947 - L2 LINE L2 -2 3270 3189 7622 55 9 0 chr15 27948107 27949620 -73430901 - L1PA7 LINE L1 -2 6152 4630 15209 82 17 9 chr15 27949620 27951744 -73428777 + L1P LINE L1 2641 4781 -1365 22 35 0 0 chr15 27951963 27951992 -73428529 + AT_rich Low_complexity Low_complexity 1 29 0 2503 60 0 13 chr15 27952393 27952708 -73427813 - AluY SINE Alu 0 311 1 327 315 167 12 chr15 27953821 27953983 -73426538 + MIR SINE MIR 36 222 -40 24 0 0 0 chr15 27954000 27954024 -73426497 + AT_rich Low_complexity Low_complexity 1 24 0 521 332 14 27 chr15 27958390 27958610 -73421911 + L3 LINE CR1 1347 1563 -14 297 281 0 24 chr15 27958687 27958769 -73421752 - MIR SINE MIR -36 226 147 4011 213 56 35 chr15 27959183 27960128 -73420393 + L1M4 LINE L1 5 969 -5573 1277 193 37 15 chr15 27960152 27960421 -73420100 + LTR52 LTR ERVL 144 418 -3 4786 209 51 43 chr15 27960426 27961025 -73419496 + L1M4 LINE L1 3908 4501 -2143 2391 96 0 3 chr15 27961025 27961337 -73419184 + AluSp SINE Alu 1 311 -2 4786 209 51 43 chr15 27961337 27962060 -73418461 + L1M4 LINE L1 4501 5241 -1403 1599 181 77 14 chr15 27962064 27962351 -73418170 + AluJo SINE Alu 1 305 -7 917 213 48 0 chr15 27962352 27962559 -73417962 + L1M4 LINE L1 4548 4764 -1880 2869 216 40 7 chr15 27962955 27964120 -73416401 + L1 LINE L1 3 1375 -4516 342 300 59 41 chr15 27964170 27964340 -73416181 - MLT1K LTR MaLR -282 306 134 4997 196 20 10 chr15 27964740 27965777 -73414744 - L1 LINE L1 -1671 4475 3428 3553 179 32 7 chr15 27965783 27966469 -73414052 + L1 LINE L1 4343 5045 -925 451 269 93 84 chr15 27966472 27966806 -73413715 + MLT1K LTR MaLR 143 479 -109 1106 226 20 8 chr15 27966826 27967074 -73413447 - MLT1F1 LTR MaLR 0 567 317 999 226 92 38 chr15 27967279 27967540 -73412981 - MLT1F1 LTR MaLR -280 287 13 441 172 69 0 chr15 27967550 27967637 -73412884 + MLT1K LTR MaLR 494 586 -2 2442 66 3 3 chr15 27967671 27967974 -73412547 + AluY SINE Alu 1 303 -8 2172 128 0 0 chr15 27970756 27971060 -73409461 - AluSx SINE Alu -8 304 1 1941 156 0 3 chr15 27972230 27972519 -73408002 - AluSx SINE Alu -19 293 6 245 292 73 51 chr15 27972652 27972789 -73407732 + MIR3 SINE MIR 21 160 -48 220 299 87 39 chr15 27972884 27973011 -73407510 - MIR3 SINE MIR -61 147 15 2207 101 0 10 chr15 27973015 27973311 -73407210 - AluSq SINE Alu -20 293 1 272 326 105 0 chr15 27974767 27974905 -73405616 - MIR SINE MIR -65 143 35 495 186 0 0 chr15 27974915 27975017 -73405504 + CT-rich Low_complexity Low_complexity 3 104 0 568 269 96 0 chr15 27975254 27975410 -73405111 + MER45A DNA AcHobo 8 178 0 1108 241 95 26 chr15 27975530 27975994 -73404527 - L1ME3A LINE L1 -224 5929 5434 1229 110 22 16 chr15 27976024 27976206 -73404315 - AluSg/x SINE Alu -10 302 120 409 209 118 0 chr15 27976213 27976408 -73404113 - L1ME3A LINE L1 -743 5386 5187 603 268 90 48 chr15 27976598 27976998 -73403523 - L1ME3A LINE L1 -1179 4950 4534 1433 168 32 72 chr15 27977003 27977323 -73403198 + MLT1A1 LTR MaLR 5 336 -29 2388 118 91 30 chr15 27977323 27977518 -73403003 + MSTB1 LTR MaLR 1 183 -249 2214 89 3 7 chr15 27977518 27977821 -73402700 + AluSg SINE Alu 2 303 -7 2388 118 91 30 chr15 27977821 27978030 -73402491 + MSTB1 LTR MaLR 183 430 -2 1433 168 32 72 chr15 27978030 27978045 -73402476 + MLT1A1 LTR MaLR 336 350 -15 2150 137 3 0 chr15 27978045 27978351 -73402170 - AluJb SINE Alu -5 307 1 1433 168 32 72 chr15 27978351 27978390 -73402131 + MLT1A1 LTR MaLR 350 365 0 1257 262 120 26 chr15 27978912 27979720 -73400801 - L1ME3A LINE L1 -1958 4171 3288 4911 134 7 17 chr15 27979746 27981335 -73399186 - L1MA1 LINE L1 -243 6059 4488 753 280 126 34 chr15 27981365 27982225 -73398296 - L1ME3A LINE L1 -2887 3242 2304 294 251 69 33 chr15 27982356 27982555 -73397966 - L1MDa LINE L1 -3840 2289 2093 4012 118 20 3 chr15 27982555 27983209 -73397312 - Tigger4(Zombi) DNA MER2_type -1 2730 2066 935 134 117 0 chr15 27983208 27983379 -73397142 - Tigger4(Zombi) DNA MER2_type -2540 191 1 * 338 262 73 12 chr15 27983398 27983751 -73396770 - L1MDa LINE L1 -4785 1344 952 2442 67 0 3 chr15 27983753 27984051 -73396470 - AluY SINE Alu -14 297 1 352 307 105 67 chr15 27984199 27984437 -73396084 - L1MDa LINE L1 -5313 806 560 814 176 24 6 chr15 27984438 27984603 -73395918 - MER20 DNA MER1_type -15 204 37 1595 177 6 40 chr15 27985499 27985826 -73394695 + LTR62 LTR ERVK 1 316 -403 2385 100 47 0 chr15 27985830 27986169 -73394352 - THE1A LTR MaLR 0 355 1 1733 72 4 0 chr15 27986169 27986404 -73394117 - THE1A-int LTR MaLR 0 1580 1345 2495 62 0 3 chr15 27986404 27986708 -73393813 + AluY SINE Alu 1 303 -8 934 211 93 117 chr15 27986892 27987441 -73393080 + MLT1F LTR MaLR 1 542 0 896 254 111 18 chr15 27987649 27987983 -73392538 + MLT1A1 LTR MaLR 1 365 0 210 281 49 49 chr15 27988323 27988405 -73392116 + MIR SINE MIR 30 111 -97 21 0 0 0 chr15 27989390 27989411 -73391110 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 27991333 27991354 -73389167 + AT_rich Low_complexity Low_complexity 1 21 0 2389 55 7 3 chr15 27994685 27994975 -73385546 - AluY SINE Alu -20 291 1 474 259 149 18 chr15 27999598 27999826 -73380695 - MIR SINE MIR -3 259 2 363 341 24 24 chr15 27999938 28000064 -73380457 + MIR SINE MIR 25 150 -58 241 284 30 0 chr15 28000530 28000597 -73379924 + GA-rich Low_complexity Low_complexity 4 72 0 323 133 86 0 chr15 28001034 28001185 -73379336 + (TA)n Simple_repeat Simple_repeat 2 165 0 379 159 33 71 chr15 28001282 28001464 -73379057 + (CATATA)n Simple_repeat Simple_repeat 4 178 0 320 117 98 0 chr15 28001473 28001636 -73378885 + (TA)n Simple_repeat Simple_repeat 1 179 0 202 106 43 0 chr15 28001660 28001707 -73378814 + (TA)n Simple_repeat Simple_repeat 2 50 0 636 99 0 0 chr15 28001707 28001788 -73378733 - AluSg/x SINE Alu -23 287 207 3857 155 59 62 chr15 28001788 28002762 -73377759 + L1MB7 LINE L1 5211 6184 0 314 308 136 18 chr15 28002778 28003051 -73377470 + L1MC/D LINE L1 5438 5742 -2066 511 254 48 0 chr15 28003087 28003213 -73377308 - MIR SINE MIR 0 262 131 495 315 73 0 chr15 28003386 28003551 -73376970 + MIR SINE MIR 11 187 -75 3846 115 2 4 chr15 28003556 28004111 -73376410 + MER41A LTR ERV1 1 554 0 286 113 57 0 chr15 28004111 28004164 -73376357 + MER41A-int LTR ERV1 1 56 -7700 25 0 0 0 chr15 28004566 28004591 -73375930 + AT_rich Low_complexity Low_complexity 1 25 0 495 291 7 14 chr15 28004867 28005008 -73375513 - MER58A DNA MER1_type 0 140 1 341 270 50 38 chr15 28005101 28005263 -73375258 + MIR SINE MIR 45 205 -57 212 302 0 16 chr15 28005954 28006017 -73374504 - MIR SINE MIR -59 149 88 2115 153 32 19 chr15 28006163 28006574 -73373947 + L1PB4 LINE L1 5741 6156 0 2465 74 10 7 chr15 28006876 28007186 -73373335 + AluY SINE Alu 1 311 0 297 0 0 0 chr15 28007826 28007859 -73372662 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 489 76 0 0 chr15 28008547 28008613 -73371908 + (TG)n Simple_repeat Simple_repeat 2 67 0 948 162 0 0 chr15 28008630 28008766 -73371755 - FLAM_C SINE Alu -5 138 3 1566 169 41 31 chr15 28010980 28011270 -73369251 + AluJo SINE Alu 1 293 -19 211 273 45 57 chr15 28012505 28012593 -73367928 - L2 LINE L2 0 3272 3186 3752 121 19 3 chr15 28012872 28013457 -73367064 + MER7C DNA MER2_type 2 595 -7 201 245 0 19 chr15 28013694 28013747 -73366774 - MIR3 SINE MIR -6 202 151 268 324 61 4 chr15 28013898 28014024 -73366497 - MER5A DNA MER1_type -37 152 1 453 344 145 37 chr15 28014855 28015593 -73364928 - L2 LINE L2 -533 2781 1964 2109 78 0 21 chr15 28015603 28015886 -73364635 + AluY SINE Alu 35 311 0 794 256 124 42 chr15 28015972 28016422 -73364099 + MLT1J LTR MaLR 25 511 0 2288 107 7 3 chr15 28016683 28016992 -73363529 - AluSx SINE Alu -2 310 1 203 179 0 0 chr15 28017980 28018019 -73362502 + A-rich Low_complexity Low_complexity 1 39 0 1859 128 4 19 chr15 28018328 28018593 -73361928 + AluJo SINE Alu 4 264 -48 367 252 14 91 chr15 28018857 28019000 -73361521 - MIR3 SINE MIR -6 202 71 357 24 0 0 chr15 28021587 28021629 -73358892 + (CA)n Simple_repeat Simple_repeat 2 43 0 318 341 0 0 chr15 28022819 28022931 -73357590 + MIR3 SINE MIR 58 170 -38 345 359 111 11 chr15 28024003 28024184 -73356337 - MIR3 SINE MIR -5 203 5 2024 96 0 87 chr15 28024894 28025227 -73355294 + AluY SINE Alu 1 304 -7 182 290 16 32 chr15 28026907 28026969 -73353552 + L3b LINE CR1 1507 1567 -16 1134 178 61 4 chr15 28027397 28027628 -73352893 + L1MB3 LINE L1 5864 6107 -76 7482 48 22 0 chr15 28027923 28028981 -73351540 - L1PA6 LINE L1 0 6154 5084 397 297 93 0 chr15 28029001 28029119 -73351402 + MER94 DNA DNA 5 133 -1 449 192 212 0 chr15 28029226 28029325 -73351196 - Charlie4 DNA MER1_type -24 1937 1818 573 246 84 22 chr15 28029679 28029858 -73350663 + MIR SINE MIR 57 246 -16 546 298 63 54 chr15 28029923 28030448 -73350073 + L2 LINE L2 2725 3251 -62 286 262 131 16 chr15 28031667 28031789 -73348732 + MIR SINE MIR 28 163 -99 577 302 86 5 chr15 28031905 28032127 -73348394 + MIR SINE MIR 3 242 -20 259 262 36 24 chr15 28032388 28032472 -73348049 - L3b LINE CR1 -208 1375 1291 2250 108 10 0 chr15 28033331 28033626 -73346895 - AluSx SINE Alu -14 298 1 2162 93 59 3 chr15 28035069 28035358 -73345163 - AluSx SINE Alu -7 305 1 315 0 0 0 chr15 28035425 28035460 -73345061 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 731 236 23 0 chr15 28035496 28035670 -73344851 - MER105 DNA DNA -3 201 24 1565 147 39 108 chr15 28035747 28036135 -73344386 - MER46B DNA MER2_type 0 236 1 2030 140 71 9 chr15 28036340 28036662 -73343859 - MER2 DNA MER2_type 0 344 3 21 0 0 0 chr15 28037695 28037716 -73342805 + AT_rich Low_complexity Low_complexity 1 21 0 2476 42 0 0 chr15 28038337 28038651 -73341870 - AluY SINE Alu 0 314 1 205 138 0 0 chr15 28039174 28039203 -73341318 + (TGG)n Simple_repeat Simple_repeat 1 29 0 462 317 70 5 chr15 28039296 28039482 -73341039 + MIR SINE MIR 64 261 -1 237 308 110 0 chr15 28039987 28040078 -73340443 - MIR3 SINE MIR -103 105 5 261 286 134 31 chr15 28041385 28041609 -73338912 - L1ME4a LINE L1 -1 6120 5874 32 43 0 0 chr15 28041669 28041715 -73338806 + AT_rich Low_complexity Low_complexity 1 46 0 255 266 144 29 chr15 28044185 28044463 -73336058 - L1ME4a LINE L1 -875 5271 4962 2368 90 0 3 chr15 28044859 28045159 -73335362 - AluSg1 SINE Alu -10 299 1 2011 100 0 4 chr15 28045497 28045757 -73334764 + AluSx SINE Alu 22 280 -32 189 0 0 0 chr15 28045757 28045778 -73334743 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 438 251 25 31 chr15 28045798 28045961 -73334560 - HAL1 LINE L1 -842 1665 1504 2539 71 0 10 chr15 28046562 28046873 -73333648 - AluY SINE Alu -3 308 1 1047 158 0 13 chr15 28048006 28048164 -73332357 - FRAM SINE Alu -7 159 4 947 323 122 41 chr15 28048210 28049136 -73331385 + L2 LINE L2 2222 3268 -4 2246 72 31 10 chr15 28050978 28051269 -73329252 + AluY SINE Alu 1 297 -14 1885 130 69 0 chr15 28051420 28051696 -73328825 + AluSx SINE Alu 1 295 -17 364 245 105 7 chr15 28054484 28054627 -73325894 + MIR SINE MIR 106 262 0 1034 123 7 0 chr15 28054628 28054774 -73325747 - AluSg/x SINE Alu -12 300 154 1997 91 4 4 chr15 28055907 28056161 -73324360 + AluSc SINE Alu 1 254 -55 22 0 0 0 chr15 28057603 28057625 -73322896 + AT_rich Low_complexity Low_complexity 1 22 0 1629 184 7 7 chr15 28059261 28059570 -73320951 - AluJo SINE Alu -3 309 1 565 282 79 0 chr15 28060911 28061113 -73319408 - L2 LINE L2 -1153 2161 1944 598 254 178 67 chr15 28065448 28065898 -73314623 + MLT1G LTR MaLR 41 536 -19 380 283 20 20 chr15 28065939 28066038 -73314483 + L2 LINE L2 3147 3245 -27 203 264 58 109 chr15 28066104 28066253 -73314268 - MIR SINE MIR -50 212 72 2372 105 0 3 chr15 28066253 28066566 -73313955 + AluSp SINE Alu 1 312 -1 203 264 58 109 chr15 28066566 28066590 -73313931 - MIR SINE MIR -190 72 48 24 32 0 0 chr15 28067388 28067419 -73313102 + AT_rich Low_complexity Low_complexity 1 31 0 26 64 0 0 chr15 28067837 28067884 -73312637 + AT_rich Low_complexity Low_complexity 1 47 0 283 294 49 10 chr15 28068998 28069100 -73311421 + MIR SINE MIR 86 191 -71 444 304 22 40 chr15 28069291 28069485 -73311036 - MIR SINE MIR -54 208 20 570 124 0 11 chr15 28069519 28069608 -73310913 + L1MB1 LINE L1 6078 6165 -3 4356 59 47 0 chr15 28069644 28070314 -73310207 + L1PA8A LINE L1 5144 5836 -295 267 31 0 0 chr15 28070684 28070716 -73309805 + (TG)n Simple_repeat Simple_repeat 2 33 0 560 119 0 0 chr15 28070861 28070945 -73309576 + AluS SINE Alu 1 84 -228 2336 82 3 3 chr15 28070983 28071287 -73309234 + AluY SINE Alu 1 304 -7 217 244 0 0 chr15 28071736 28071777 -73308744 + (TG)n Simple_repeat Simple_repeat 2 42 0 977 124 51 0 chr15 28072567 28072745 -73307776 + Tigger3(Golem) DNA MER2_type 2842 3028 -1 202 143 95 0 chr15 28072865 28072907 -73307614 + (CTCA)n Simple_repeat Simple_repeat 1 46 0 456 351 56 56 chr15 28072956 28073241 -73307280 - L2 LINE L2 0 3272 2988 271 352 33 0 chr15 28073531 28073622 -73306899 - L2 LINE L2 -234 3079 2986 * 833 320 142 19 chr15 28073612 28074197 -73306324 - L2 LINE L2 -924 2390 1734 188 329 13 13 chr15 28074245 28074321 -73306200 + L3b LINE CR1 1420 1495 -88 2351 74 3 26 chr15 28075348 28075659 -73304862 - AluY SINE Alu -7 304 1 382 202 73 32 chr15 28075762 28075886 -73304635 - L1MC4a LINE L1 -1909 5899 5771 2173 110 13 0 chr15 28076024 28076325 -73304196 - AluSx SINE Alu -7 305 1 336 202 35 79 chr15 28076957 28077071 -73303450 - L2 LINE L2 -1 3271 3163 490 0 0 0 chr15 28077183 28077244 -73303277 - L1PA14 LINE L1 -1 6160 6100 1199 67 7 0 chr15 28077279 28077463 -73303058 + AluY SINE Alu 134 318 0 318 283 222 6 chr15 28078507 28078687 -73301834 + L2 LINE L2 2298 2516 -798 1414 159 71 0 chr15 28078753 28078992 -73301529 - AluJo SINE Alu -13 299 44 317 346 110 2 chr15 28079159 28079387 -73301134 + L2 LINE L2 2715 2970 -302 369 340 54 14 chr15 28079407 28079554 -73300967 + MIR SINE MIR 110 262 0 427 235 38 8 chr15 28079701 28079833 -73300688 + MER104 DNA Tc2 31 166 -14 821 179 31 131 chr15 28080330 28080688 -73299833 - MER33 DNA MER1_type -1 323 2 2462 83 0 3 chr15 28080999 28081313 -73299208 + AluSq SINE Alu 1 313 0 204 351 0 0 chr15 28081395 28081452 -73299069 + L2 LINE L2 3202 3258 -14 273 57 0 0 chr15 28081526 28081561 -73298960 + (A)n Simple_repeat Simple_repeat 1 35 0 588 224 40 0 chr15 28081561 28081686 -73298835 - MER5B DNA MER1_type -48 130 1 314 186 14 14 chr15 28083505 28083575 -73296946 - L2 LINE L2 -12 3260 3191 223 268 118 81 chr15 28085313 28085559 -73294962 - L2 LINE L2 -726 2588 2334 1271 202 49 22 chr15 28086123 28086390 -73294131 + AluJo SINE Alu 1 274 -38 239 91 0 23 chr15 28086398 28086442 -73294079 + (GAAA)n Simple_repeat Simple_repeat 3 45 0 668 188 28 6 chr15 28086470 28086646 -73293875 + GA-rich Low_complexity Low_complexity 1 180 0 1585 194 0 7 chr15 28086739 28087023 -73293498 + AluJb SINE Alu 1 282 -30 349 232 123 36 chr15 28087842 28087980 -73292541 + MIR SINE MIR 113 262 0 2272 33 33 4 chr15 28089530 28089837 -73290684 + AluY SINE Alu 1 315 0 462 264 56 8 chr15 28089839 28089964 -73290557 - L2 LINE L2 -3 3310 3180 1821 189 17 44 chr15 28091201 28091660 -73288861 + L1MB8 LINE L1 5723 6169 -9 2270 91 3 0 chr15 28091924 28092240 -73288281 + AluSp SINE Alu 1 317 0 1454 68 0 0 chr15 28092419 28092610 -73287911 + L1PA5 LINE L1 5964 6154 0 430 336 96 29 chr15 28092983 28093474 -73287047 + L2 LINE L2 1754 2277 -1037 422 300 140 42 chr15 28093477 28093879 -73286642 + L2 LINE L2 2594 3085 -187 1920 71 64 21 chr15 28093879 28094160 -73286361 - AluY SINE Alu -18 293 1 422 300 140 42 chr15 28094160 28094369 -73286152 + L2 LINE L2 3085 3272 0 612 261 0 0 chr15 28094452 28094594 -73285927 + Tigger3(Golem) DNA MER2_type 1 142 -2887 429 83 0 0 chr15 28094602 28094662 -73285859 + Tigger3(Golem) DNA MER2_type 2802 2861 -168 402 314 40 105 chr15 28095310 28095680 -73284841 - L1ME4a LINE L1 -224 5897 5552 183 337 58 12 chr15 28096127 28096213 -73284308 - L2 LINE L2 -960 2354 2265 2231 101 0 19 chr15 28097943 28098259 -73282262 - AluSg SINE Alu 0 310 1 282 256 103 0 chr15 28099171 28099249 -73281272 - MIR SINE MIR -170 92 7 188 277 0 46 chr15 28099413 28099478 -73281043 - MIR SINE MIR -181 81 20 997 240 27 15 chr15 28100282 28100584 -73279937 + L1MD3 LINE L1 6123 6344 0 2130 133 0 3 chr15 28100942 28101242 -73279279 + AluSx SINE Alu 1 299 -13 300 273 227 25 chr15 28101507 28101749 -73278772 - L3 LINE CR1 -6 1571 1281 646 317 182 14 chr15 28101814 28102553 -73277968 - L2 LINE L2 0 3313 2426 335 244 115 13 chr15 28102570 28102718 -73277803 - MIR SINE MIR -63 145 32 1462 280 118 37 chr15 28103809 28104820 -73275701 - HAL1 LINE L1 -7 2500 1408 429 282 141 5 chr15 28105237 28105443 -73275078 - HAL1 LINE L1 -2253 254 21 646 179 0 0 chr15 28106459 28106571 -73273950 - MER97c DNA MER1_type? -911 179 68 544 202 101 0 chr15 28106571 28106739 -73273782 - MER53 DNA DNA -4 185 1 1949 158 0 22 chr15 28107167 28107478 -73273043 + AluJo SINE Alu 9 312 0 340 214 97 45 chr15 28107720 28107874 -73272647 + MER103 DNA DNA 2 163 -3 192 97 0 0 chr15 28108056 28108087 -73272434 + (TG)n Simple_repeat Simple_repeat 2 32 0 2237 162 52 44 chr15 28108133 28108634 -73271887 - MLT1D LTR MaLR 0 505 1 230 178 22 0 chr15 28109019 28109064 -73271457 - MIR SINE MIR -92 170 125 382 343 66 11 chr15 28109442 28109623 -73270898 + MIR SINE MIR 22 212 -50 21 0 0 0 chr15 28109817 28109838 -73270683 + AT_rich Low_complexity Low_complexity 1 21 0 352 222 141 0 chr15 28111769 28111868 -73268653 + MIR SINE MIR 66 178 -84 1682 143 19 4 chr15 28112873 28113131 -73267390 - AluJb SINE Alu -10 302 41 297 264 142 26 chr15 28113460 28113750 -73266771 + L2 LINE L2 2776 3090 -182 8046 174 25 15 chr15 28113795 28115273 -73265248 - L1PB1 LINE L1 -3 6148 4686 2056 86 47 0 chr15 28115273 28115552 -73264969 - AluY SINE Alu -19 292 1 8046 174 25 15 chr15 28115552 28115799 -73264722 - L1PB1 LINE L1 -1465 4686 4443 198 103 0 0 chr15 28115799 28115828 -73264693 + (TA)n Simple_repeat Simple_repeat 2 30 0 8046 174 25 15 chr15 28115828 28116860 -73263661 - L1PB1 LINE L1 -1708 4443 3371 251 292 56 14 chr15 28116880 28116952 -73263569 + L2 LINE L2 3121 3195 -77 2205 100 13 17 chr15 28118221 28118521 -73262000 + AluSx SINE Alu 1 299 -13 385 262 132 32 chr15 28118735 28119105 -73261416 - L1ME4a LINE L1 -1 6120 5714 529 151 0 11 chr15 28119232 28119325 -73261196 + U13 snRNA snRNA 13 104 0 285 284 0 0 chr15 28119327 28119401 -73261120 + A-rich Low_complexity Low_complexity 1 74 0 251 360 93 0 chr15 28119410 28119496 -73261025 - MER91A DNA MER1_type -10 186 93 353 270 135 44 chr15 28120155 28120407 -73260114 - L1ME4a LINE L1 -1278 4868 4594 3687 161 54 32 chr15 28120473 28121306 -73259215 - L1MB1 LINE L1 -22 6146 5296 213 209 0 0 chr15 28122689 28122732 -73257789 + MIR SINE MIR 98 140 -68 2217 101 0 0 chr15 28124893 28125209 -73255312 + AluSq SINE Alu 1 316 0 214 317 0 0 chr15 28125712 28125772 -73254749 + CT-rich Low_complexity Low_complexity 1 60 0 184 341 91 28 chr15 28128415 28128591 -73251930 - L2 LINE L2 -568 2746 2560 1599 226 12 6 chr15 28130240 28130576 -73249945 + MER58B DNA MER1_type 2 339 -2 3023 95 91 34 chr15 28131081 28131577 -73248944 - MER1A DNA MER1_type 0 527 4 189 132 0 0 chr15 28132608 28132646 -73247875 + (A)n Simple_repeat Simple_repeat 1 38 0 617 225 95 18 chr15 28132684 28132853 -73247668 + MER5A DNA MER1_type 8 189 0 329 296 55 45 chr15 28133878 28134077 -73246444 - MIR SINE MIR -58 204 4 649 290 190 16 chr15 28136406 28136727 -73243794 - L2 LINE L2 0 3313 2937 242 301 181 30 chr15 28136801 28136967 -73243554 + MIR SINE MIR 72 262 0 254 342 61 30 chr15 28137314 28137577 -73242944 + L2 LINE L2 2659 2929 -385 182 313 90 75 chr15 28137724 28137858 -73242663 + L2 LINE L2 3124 3259 -13 431 215 185 31 chr15 28141517 28141647 -73238874 - MIR SINE MIR -2 260 111 1264 253 132 17 chr15 28142975 28143567 -73236954 + Charlie7 DNA MER1_type 64 723 -1889 283 225 123 22 chr15 28143584 28143722 -73236799 + Charlie7 DNA MER1_type 2458 2609 -3 26 0 0 0 chr15 28144065 28144091 -73236430 + AT_rich Low_complexity Low_complexity 1 26 0 248 399 51 33 chr15 28144561 28144990 -73235531 + L2 LINE L2 2243 2679 -635 * 692 276 121 76 chr15 28144975 28145438 -73235083 - L2 LINE L2 -1 3312 2829 1749 137 29 14 chr15 28145693 28145970 -73234551 - AluSx SINE Alu -8 304 24 2143 125 20 0 chr15 28148666 28148971 -73231550 + AluSp SINE Alu 2 312 -1 1190 223 94 26 chr15 28149202 28149668 -73230853 + L1MC5 LINE L1 7085 7582 -379 892 153 0 0 chr15 28149806 28149943 -73230578 + FLAM_C SINE Alu 1 137 -6 270 251 113 31 chr15 28149946 28150141 -73230380 + L1MC5 LINE L1 7703 7913 -48 294 342 68 6 chr15 28150728 28150824 -73229697 + MIR SINE MIR 62 173 -89 1576 188 10 50 chr15 28150824 28151127 -73229394 - AluJb SINE Alu -21 291 1 294 342 68 6 chr15 28151127 28151191 -73229330 + MIR SINE MIR 173 232 -30 23 24 0 24 chr15 28151281 28151300 -73229221 + AT_rich Low_complexity Low_complexity 1 19 -21 1462 204 17 24 chr15 28151300 28151589 -73228932 - AluJo SINE Alu -25 287 1 23 24 0 24 chr15 28151589 28151610 -73228911 + AT_rich Low_complexity Low_complexity 19 40 0 330 302 10 10 chr15 28152491 28152587 -73227934 - L2 LINE L2 0 3313 3218 4077 206 44 38 chr15 28153461 28154012 -73226509 - L1MB1 LINE L1 -6 5986 5440 2319 95 7 0 chr15 28154012 28154318 -73226203 - AluY SINE Alu -3 308 1 4077 206 44 38 chr15 28154318 28156148 -73224373 - L1MB1 LINE L1 -552 5440 3622 2069 101 0 7 chr15 28156148 28156424 -73224097 + AluSx SINE Alu 1 274 -38 4077 206 44 38 chr15 28156424 28158618 -73221903 - L1MB1 LINE L1 -2370 3622 1300 2191 123 0 25 chr15 28158621 28158938 -73221583 - AluSx SINE Alu -3 309 1 815 130 8 0 chr15 28158947 28159070 -73221451 - AluSg/x SINE Alu -5 307 184 429 282 141 5 chr15 28159299 28159505 -73221016 - HAL1 LINE L1 -2253 254 21 1208 132 0 6 chr15 28160339 28160513 -73220008 - AluSg SINE Alu -137 173 1 1225 283 47 0 chr15 28160522 28160992 -73219529 - L1MB1 LINE L1 -4706 1185 694 404 222 17 22 chr15 28161200 28161380 -73219141 + GA-rich Low_complexity Low_complexity 2 180 0 1108 301 89 52 chr15 28161494 28162142 -73218379 - L1MB1 LINE L1 -5217 674 3 1972 131 0 10 chr15 28162830 28163121 -73217400 + AluSx SINE Alu 1 288 -24 372 22 0 0 chr15 28164976 28165021 -73215500 + (TG)n Simple_repeat Simple_repeat 2 46 0 771 158 22 0 chr15 28165550 28165689 -73214832 + LTR25 LTR ERV1 1 142 -652 439 240 73 45 chr15 28166228 28166407 -73214114 - L3b LINE CR1 -159 1424 1241 903 202 146 38 chr15 28167560 28167773 -73212748 + MER46A DNA MER2_type 1 236 0 564 204 19 19 chr15 28169514 28169668 -73210853 + MLT1C LTR MaLR 347 467 0 257 233 50 0 chr15 28169680 28169740 -73210781 - MER5A DNA MER1_type -118 71 9 1316 265 145 38 chr15 28171486 28173408 -73207113 - L1M4 LINE L1 -844 5302 3174 336 203 13 0 chr15 28173444 28173523 -73206998 + MER116 DNA Mariner 1 80 0 5741 114 15 10 chr15 28173773 28174525 -73205996 + L1PA13 LINE L1 4637 5384 -779 903 121 0 0 chr15 28174525 28174665 -73205856 + (TA)n Simple_repeat Simple_repeat 2 141 0 5741 114 15 10 chr15 28174665 28175434 -73205087 + L1PA13 LINE L1 5384 6159 -4 348 64 0 0 chr15 28176009 28176056 -73204465 + (CA)n Simple_repeat Simple_repeat 2 48 0 410 245 37 86 chr15 28176247 28176410 -73204111 - MIR SINE MIR -31 231 77 377 388 7 0 chr15 28179044 28179196 -73201325 - MIR3 SINE MIR -37 171 19 1782 109 102 18 chr15 28179308 28179583 -73200938 + AluSx SINE Alu 1 298 -14 495 308 42 0 chr15 28179613 28179756 -73200765 + MIR SINE MIR 65 213 -49 321 155 0 0 chr15 28180380 28180438 -73200083 + (TG)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chr15 28180945 28180967 -73199554 + AT_rich Low_complexity Low_complexity 1 22 0 249 33 0 0 chr15 28181880 28181910 -73198611 + (T)n Simple_repeat Simple_repeat 1 30 0 198 310 92 0 chr15 28182325 28182412 -73198109 - MIR SINE MIR -71 191 97 30 69 0 0 chr15 28182576 28182634 -73197887 + AT_rich Low_complexity Low_complexity 1 58 0 297 320 52 0 chr15 28183001 28183098 -73197423 + MIR3 SINE MIR 97 198 -10 378 0 0 0 chr15 28183134 28183176 -73197345 + (CATA)n Simple_repeat Simple_repeat 2 43 0 2258 112 0 3 chr15 28183344 28183648 -73196873 + AluSq SINE Alu 1 303 -10 748 147 177 20 chr15 28184806 28185004 -73195517 - MSTA LTR MaLR -190 238 10 2328 101 3 3 chr15 28185298 28185604 -73194917 + AluSx SINE Alu 1 306 -6 2254 104 0 0 chr15 28185721 28186018 -73194503 - AluSq SINE Alu -16 297 1 409 272 22 100 chr15 28186236 28186467 -73194054 - MIR SINE MIR -12 250 30 221 277 18 54 chr15 28186513 28186625 -73193896 + L2 LINE L2 3005 3112 -201 239 54 27 0 chr15 28186690 28186727 -73193794 + (TTA)n Simple_repeat Simple_repeat 2 39 0 420 201 128 103 chr15 28186758 28186856 -73193665 + MER3 DNA MER1_type 1 95 -114 7701 18 2 2 chr15 28186856 28188087 -73192434 + L1PA3 LINE L1 4921 6151 -4 420 201 128 103 chr15 28188087 28188192 -73192329 + MER3 DNA MER1_type 95 209 0 251 237 34 17 chr15 28188192 28188251 -73192270 + L2 LINE L2 3254 3313 0 22 0 0 0 chr15 28188304 28188326 -73192195 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr15 28188508 28188532 -73191989 + (CA)n Simple_repeat Simple_repeat 1 24 0 297 0 0 0 chr15 28188601 28188634 -73191887 + (CA)n Simple_repeat Simple_repeat 2 34 0 2147 118 0 7 chr15 28189700 28189989 -73190532 + AluSx SINE Alu 1 287 -25 198 0 0 0 chr15 28193497 28193519 -73187002 + (TGGGGG)n Simple_repeat Simple_repeat 6 27 0 222 213 0 0 chr15 28193538 28193585 -73186936 + (TGG)n Simple_repeat Simple_repeat 2 48 0 241 276 35 35 chr15 28194970 28195057 -73185464 + L2 LINE L2 3137 3223 -49 511 350 40 5 chr15 28195594 28195817 -73184704 + MIR SINE MIR 22 252 -10 374 263 53 59 chr15 28196583 28196735 -73183786 + MIR SINE MIR 91 241 -21 422 320 164 34 chr15 28196908 28197593 -73182928 + L2 LINE L2 1732 2505 -809 265 243 110 37 chr15 28197821 28197957 -73182564 + L2 LINE L2 2829 2974 -298 573 283 23 12 chr15 28199119 28199292 -73181229 - MER5B DNA MER1_type -1 177 3 184 405 51 0 chr15 28201541 28201620 -73178901 - MIR SINE MIR -160 102 20 301 300 36 9 chr15 28201725 28201835 -73178686 - MIR SINE MIR -56 206 94 319 357 53 29 chr15 28202054 28202225 -73178296 + MIR3 SINE MIR 17 191 -17 2136 106 20 0 chr15 28202445 28202738 -73177783 - AluSc SINE Alu -10 299 1 21 36 0 0 chr15 28202959 28202987 -73177534 + AT_rich Low_complexity Low_complexity 1 28 0 2414 91 0 3 chr15 28203859 28204168 -73176353 + AluY SINE Alu 2 309 -2 1625 141 20 12 chr15 28205352 28205607 -73174914 + AluSx SINE Alu 35 291 -21 2049 71 0 87 chr15 28205794 28206130 -73174391 + AluY SINE Alu 1 309 0 180 0 0 0 chr15 28206130 28206150 -73174371 + (TTA)n Simple_repeat Simple_repeat 1 20 0 267 224 30 0 chr15 28206231 28206298 -73174223 + L1ME1 LINE L1 5044 5112 -1034 506 158 40 0 chr15 28206339 28206440 -73174081 + L1MA7 LINE L1 6182 6286 -5 1637 209 11 76 chr15 28206531 28207081 -73173440 + L1ME1 LINE L1 5204 5721 -445 1561 249 14 45 chr15 28207081 28207568 -73172953 + MLT2B1 LTR ERVL 1 472 -48 261 170 0 0 chr15 28207626 28207673 -73172848 + MLT2C1 LTR ERVL 351 397 0 1357 271 25 9 chr15 28207675 28208115 -73172406 + L1ME1 LINE L1 5719 6165 -1 242 180 148 0 chr15 28209012 28209073 -73171448 + MIR SINE MIR 95 164 -98 204 40 0 0 chr15 28209563 28209588 -73170933 + (A)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr15 28211121 28211150 -73169371 + AT_rich Low_complexity Low_complexity 1 29 0 240 35 0 0 chr15 28212634 28212663 -73167858 + (T)n Simple_repeat Simple_repeat 1 29 0 195 311 22 22 chr15 28214176 28214266 -73166255 - L2 LINE L2 -505 2809 2720 272 327 83 48 chr15 28214292 28214460 -73166061 - L2 LINE L2 -701 2613 2440 205 379 133 10 chr15 28214639 28214948 -73165573 - L2 LINE L2 -961 2353 2007 2336 111 30 16 chr15 28215231 28215601 -73164920 - THE1C LTR MaLR 0 375 1 291 234 26 0 chr15 28217796 28217873 -73162648 - MER116 DNA Mariner 0 80 2 183 239 0 0 chr15 28218198 28218244 -73162277 - L2 LINE L2 0 3313 3268 420 326 26 70 chr15 28218377 28218647 -73161874 + L2 LINE L2 2577 2834 -480 189 0 0 0 chr15 28218797 28218818 -73161703 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 264 30 0 0 chr15 28218817 28218850 -73161671 + (CA)n Simple_repeat Simple_repeat 1 33 0 508 289 83 72 chr15 28218920 28219280 -73161241 + L2 LINE L2 2907 3270 -2 303 250 11 34 chr15 28220087 28220175 -73160346 + MIR SINE MIR 176 261 -1 453 292 35 14 chr15 28220771 28220915 -73159606 - MIR SINE MIR -109 153 7 187 219 0 24 chr15 28221193 28221234 -73159287 + MIR SINE MIR 223 262 0 231 330 22 22 chr15 28222046 28222137 -73158384 + MIR SINE MIR 34 124 -84 251 277 0 15 chr15 28222409 28222474 -73158047 + GA-rich Low_complexity Low_complexity 5 68 0 238 286 57 0 chr15 28222580 28222650 -73157871 - Charlie8 DNA MER1_type 0 2417 2344 262 355 51 7 chr15 28223015 28223153 -73157368 - MIR3 SINE MIR -9 199 56 2388 86 0 0 chr15 28224752 28225054 -73155467 + AluYa5 SINE Alu 1 302 -9 663 172 8 39 chr15 28225079 28225207 -73155314 + AluJb SINE Alu 1 124 -188 2126 147 0 0 chr15 28225585 28225884 -73154637 + AluSq SINE Alu 1 299 -14 276 113 0 56 chr15 28226123 28226194 -73154327 + (TCC)n Simple_repeat Simple_repeat 2 68 0 326 105 0 18 chr15 28226256 28226313 -73154208 + (TCC)n Simple_repeat Simple_repeat 2 57 0 283 200 0 0 chr15 28226313 28226368 -73154153 - Alu SINE Alu -11 289 235 566 304 32 16 chr15 28227156 28227409 -73153112 - Charlie8 DNA MER1_type -2128 289 33 12513 33 7 6 chr15 28227487 28229791 -73150730 + L1PA4 LINE L1 3828 6155 0 232 304 114 0 chr15 28230126 28230205 -73150316 + MIR SINE MIR 164 251 -11 5184 133 28 44 chr15 28230725 28231793 -73148728 + L1MA8 LINE L1 5237 6287 -4 1036 303 65 35 chr15 28233719 28234151 -73146370 + L2 LINE L2 2497 2941 -373 775 209 29 17 chr15 28234164 28234336 -73146185 - MIR SINE MIR 0 262 89 1054 204 20 95 chr15 28234343 28234469 -73146052 + L1ME1 LINE L1 5716 5850 -316 1977 109 19 0 chr15 28234469 28234735 -73145786 - AluSq SINE Alu -9 304 34 1054 204 20 95 chr15 28234735 28235009 -73145512 + L1ME1 LINE L1 5850 6089 -77 278 292 77 73 chr15 28235091 28236449 -73144072 + L1ME LINE L1 4060 5417 -747 357 311 42 30 chr15 28236454 28236621 -73143900 + L1ME LINE L1 5478 5646 -516 229 368 0 0 chr15 28237366 28237472 -73143049 + (TGG)n Simple_repeat Simple_repeat 3 108 0 549 268 61 53 chr15 28239505 28239733 -73140788 - MIR SINE MIR -10 252 23 676 243 112 0 chr15 28240492 28240661 -73139860 + MER5A DNA MER1_type 2 189 0 22 70 0 0 chr15 28240698 28240741 -73139780 + AT_rich Low_complexity Low_complexity 1 43 0 1246 199 68 61 chr15 28241289 28241685 -73138836 + LTR52 LTR ERVL 8 406 -15 1363 181 99 11 chr15 28241725 28242078 -73138443 + L1MC2 LINE L1 5961 6344 0 710 141 0 94 chr15 28242324 28242367 -73138154 + MLT1A1 LTR MaLR 2 47 -318 2255 109 0 0 chr15 28242367 28242669 -73137852 + AluSx SINE Alu 1 302 -10 710 141 0 94 chr15 28242669 28242774 -73137747 + MLT1A1 LTR MaLR 47 136 -229 2232 205 50 5 chr15 28242776 28243220 -73137301 + MER21B LTR ERV1 1 464 -399 4034 111 79 91 chr15 28243227 28244613 -73135908 - pTR5 LTR ERV1 0 2438 743 1228 201 19 30 chr15 28244614 28244882 -73135639 + MER21A LTR ERV1 550 814 -117 2086 107 34 0 chr15 28244950 28245241 -73135280 + AluSq SINE Alu 1 301 -12 245 288 88 12 chr15 28245270 28245350 -73135171 - L2 LINE L2 -18 3254 3169 287 243 112 86 chr15 28245499 28245767 -73134754 + MLT1I LTR MaLR 21 295 -114 797 126 144 29 chr15 28246591 28246765 -73133756 + MER2 DNA MER2_type 2 195 -150 296 308 13 0 chr15 28246791 28246869 -73133652 + MER2 DNA MER2_type 267 345 0 787 160 0 80 chr15 28247487 28247662 -73132859 + FRAM SINE Alu 4 164 -2 724 277 73 40 chr15 28248553 28248817 -73131704 + L1ME3 LINE L1 5201 5455 -707 2591 61 0 6 chr15 28248817 28249130 -73131391 - AluY SINE Alu 0 311 1 724 277 73 40 chr15 28249130 28249562 -73130959 + L1ME3 LINE L1 5455 5909 -253 327 317 114 72 chr15 28250136 28250609 -73129912 + L1M4 LINE L1 3729 4221 -1925 339 25 0 0 chr15 28250678 28250718 -73129803 + (CA)n Simple_repeat Simple_repeat 1 40 0 261 0 0 0 chr15 28250995 28251024 -73129497 + (CA)n Simple_repeat Simple_repeat 1 29 0 484 186 167 19 chr15 28251853 28252009 -73128512 + MER53 DNA DNA 11 189 0 780 276 11 0 chr15 28252653 28252827 -73127694 - MER5B DNA MER1_type 0 178 3 279 71 0 0 chr15 28253099 28253141 -73127380 + (TAAAAA)n Simple_repeat Simple_repeat 2 43 0 191 294 15 59 chr15 28253665 28253733 -73126788 - L3b LINE CR1 -2 1581 1517 2321 86 0 3 chr15 28254460 28254762 -73125759 + AluY SINE Alu 1 301 -10 574 217 20 124 chr15 28255178 28255208 -73125313 - MIR SINE MIR -34 228 196 360 244 98 18 chr15 28255208 28255372 -73125149 - MER104 DNA MER2_type 0 180 4 574 217 20 124 chr15 28255372 28255410 -73125111 - MIR SINE MIR -66 196 156 1724 61 0 22 chr15 28255410 28255638 -73124883 - L1PA7 LINE L1 -3 6151 5929 574 217 20 124 chr15 28255638 28255817 -73124704 - MIR SINE MIR -106 156 6 216 329 13 0 chr15 28256634 28256713 -73123808 - MIR SINE MIR -2 260 181 312 301 78 20 chr15 28256874 28257027 -73123494 + L1ME LINE L1 5658 5819 -302 351 203 0 14 chr15 28257096 28257170 -73123351 - Tigger5 DNA MER2_type 0 2323 2251 270 170 0 19 chr15 28257140 28257193 -73123328 - Tigger5 DNA MER2_type -2270 53 2 * 728 284 36 4 chr15 28257338 28257563 -73122958 + MIR SINE MIR 2 233 -29 2464 73 0 0 chr15 28257612 28257914 -73122607 - AluY SINE Alu -9 302 1 3379 245 106 45 chr15 28257915 28258901 -73121620 + L2 LINE L2 1364 2457 -857 1669 150 4 26 chr15 28258901 28259174 -73121347 + AluJo SINE Alu 29 295 -17 3379 245 106 45 chr15 28259174 28259551 -73120970 + L2 LINE L2 2457 2810 -504 1302 221 129 18 chr15 28259551 28259994 -73120527 - Charlie4a DNA MER1_type 0 508 17 768 266 101 59 chr15 28260055 28260339 -73120182 + L2 LINE L2 2872 3181 -132 2123 171 58 24 chr15 28260339 28260753 -73119768 + MSTC LTR MaLR 1 428 0 768 266 101 59 chr15 28260753 28260892 -73119629 + L2 LINE L2 3181 3313 0 507 289 37 74 chr15 28261128 28261370 -73119151 + MIR SINE MIR 8 240 -22 21 0 0 0 chr15 28261496 28261517 -73119004 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr15 28261697 28261728 -73118793 + AT_rich Low_complexity Low_complexity 1 31 0 201 250 0 0 chr15 28262293 28262337 -73118184 - MER5A DNA MER1_type -111 78 35 992 263 76 30 chr15 28262363 28262528 -73117993 - Charlie2 DNA MER1_type 0 2862 2706 1976 135 10 16 chr15 28262528 28262839 -73117682 + AluSx SINE Alu 1 309 -3 992 263 76 30 chr15 28262839 28263198 -73117323 - Charlie2 DNA MER1_type -156 2706 2314 310 255 47 9 chr15 28263249 28263355 -73117166 - Charlie2 DNA MER1_type -2523 339 230 276 274 0 32 chr15 28263399 28263494 -73117027 - Charlie2 DNA MER1_type -2657 125 34 237 211 35 18 chr15 28263540 28263597 -73116924 + MER5A DNA MER1_type 49 106 -83 286 327 91 14 chr15 28264420 28264640 -73115881 + L2 LINE L2 2589 2825 -489 221 288 41 41 chr15 28265029 28265102 -73115419 + L2 LINE L2 3239 3311 -2 468 280 163 47 chr15 28265607 28265993 -73114528 + L1M4 LINE L1 3730 4160 -1986 1201 162 51 0 chr15 28266119 28266353 -73114168 + L1MB2 LINE L1 5308 5553 -630 652 176 94 18 chr15 28266353 28266523 -73113998 + L1MB2 LINE L1 5987 6169 -2 294 115 0 0 chr15 28266531 28266583 -73113938 + L1MB4 LINE L1 6128 6179 -1 325 254 113 11 chr15 28266603 28266780 -73113741 + L1M4 LINE L1 4215 4409 -1737 263 281 68 25 chr15 28266859 28267094 -73113427 + L1M4 LINE L1 4518 4762 -1384 361 328 16 16 chr15 28267389 28267511 -73113010 - MIR SINE MIR -139 123 2 843 211 91 15 chr15 28267593 28267792 -73112729 + Tigger5 DNA MER2_type 1 214 -2109 1961 179 36 8 chr15 28267792 28268184 -73112337 + MER57A LTR ERV1 1 403 0 2877 151 26 18 chr15 28268184 28268246 -73112275 + MER57A-int LTR ERV1 1 61 -7476 5112 208 60 83 chr15 28268246 28270042 -73110479 + MER52A LTR ERV1 1 1753 -2 2877 151 26 18 chr15 28270042 28270481 -73110040 + MER57A-int LTR ERV1 61 506 -7031 356 146 0 10 chr15 28270482 28270552 -73109969 - AluS SINE Alu -240 60 7 26 82 0 0 chr15 28270641 28270702 -73109819 + AT_rich Low_complexity Low_complexity 1 61 0 3919 141 53 9 chr15 28270773 28271689 -73108832 + MER57A-int LTR ERV1 494 1451 -4495 2144 168 38 2 chr15 28271680 28272078 -73108443 + MER57A-int LTR ERV1 2218 2629 -4908 * 1178 151 0 10 chr15 28272070 28272269 -73108252 + MER57A-int LTR ERV1 2777 2973 -4564 * 3650 128 28 63 chr15 28272269 28273161 -73107360 + MER57A-int LTR ERV1 2533 3327 -2619 2201 122 58 58 chr15 28273161 28273522 -73106999 - THE1B LTR MaLR -3 361 1 3650 128 28 63 chr15 28273522 28273714 -73106807 + MER57A-int LTR ERV1 3327 3524 -2422 568 83 0 0 chr15 28273737 28273809 -73106712 + MER57A-int LTR ERV1 7078 7149 -388 717 123 23 31 chr15 28273809 28273939 -73106582 + LTR54B LTR ERV1 3 131 -367 1368 74 157 26 chr15 28273939 28274168 -73106353 + MER57A-int LTR ERV1 7279 7537 0 2351 184 8 2 chr15 28274168 28274569 -73105952 + MER57A LTR ERV1 1 403 0 1648 135 39 0 chr15 28274571 28274831 -73105690 + Tigger5 DNA MER2_type 2054 2323 0 340 256 143 12 chr15 28274972 28275222 -73105299 + L1M1 LINE L1 5248 5529 -743 413 253 123 68 chr15 28275280 28275572 -73104949 + L1MC4a LINE L1 5617 5924 -1884 222 294 20 0 chr15 28275925 28275976 -73104545 + MIR SINE MIR 19 70 -138 4259 132 22 12 chr15 28275977 28276653 -73103868 + MER50 LTR ERV1 1 683 -51 307 243 54 14 chr15 28276683 28276757 -73103764 + MIR3 SINE MIR 108 184 -24 25 0 0 0 chr15 28276844 28276869 -73103652 + AT_rich Low_complexity Low_complexity 1 25 0 234 0 0 0 chr15 28277129 28277155 -73103366 + (CAATT)n Simple_repeat Simple_repeat 1 26 0 2683 189 9 23 chr15 28277205 28277776 -73102745 + LTR27 LTR ERV1 3 627 -134 1765 197 6 24 chr15 28277780 28278110 -73102411 + LTR28 LTR ERV1 697 1020 0 581 247 84 54 chr15 28278110 28278349 -73102172 - MER21B LTR ERV1 -215 648 403 210 175 0 25 chr15 28278456 28278496 -73102025 + T-rich Low_complexity Low_complexity 5 43 0 921 229 18 31 chr15 28278496 28278719 -73101802 - MER21B LTR ERV1 -546 317 98 496 177 0 0 chr15 28278771 28278850 -73101671 - MER21B LTR ERV1 -773 90 12 2978 108 66 38 chr15 28279523 28280024 -73100497 + MER4B LTR ERV1 1 515 -95 339 143 26 52 chr15 28280036 28280113 -73100408 + L1ME3A LINE L1 4753 4827 -1319 23 33 0 0 chr15 28280259 28280289 -73100232 + AT_rich Low_complexity Low_complexity 1 30 0 2727 242 90 40 chr15 28280405 28280855 -73099666 + L1ME3A LINE L1 5216 5642 -528 2608 155 8 2 chr15 28280855 28281254 -73099267 - MER57A LTR ERV1 -2 401 1 2727 242 90 40 chr15 28281254 28281478 -73099043 + L1ME3A LINE L1 5642 5853 -317 1959 132 7 7 chr15 28281478 28281767 -73098754 + AluSx SINE Alu 1 289 -23 2727 242 90 40 chr15 28281767 28282003 -73098518 + L1ME3A LINE L1 5853 6170 0 321 312 123 13 chr15 28282031 28282185 -73098336 - MIR SINE MIR -55 207 37 231 256 8 34 chr15 28282566 28282683 -73097838 + (TGG)n Simple_repeat Simple_repeat 1 114 0 4232 166 12 15 chr15 28283344 28284096 -73096425 - L1MA7 LINE L1 -4 6287 5538 256 217 58 0 chr15 28284309 28284378 -73096143 + MIR3 SINE MIR 130 202 -6 192 163 0 0 chr15 28286002 28286045 -73094476 + (TA)n Simple_repeat Simple_repeat 2 44 0 379 259 54 18 chr15 28286731 28286843 -73093678 + L1ME LINE L1 5571 5686 -435 2381 62 0 3 chr15 28286923 28287212 -73093309 + AluY SINE Alu 1 288 -23 1025 289 79 24 chr15 28287701 28288195 -73092326 + LTR33 LTR ERVL 1 521 0 24 0 0 0 chr15 28289913 28289937 -73090584 + AT_rich Low_complexity Low_complexity 1 24 0 552 281 118 6 chr15 28290449 28290627 -73089894 - MIR SINE MIR -49 213 16 2450 84 3 0 chr15 28294577 28294888 -73085633 - AluSp SINE Alu -1 312 1 314 233 92 25 chr15 28295215 28295335 -73085186 - MIR SINE MIR -65 197 70 797 274 24 28 chr15 28295337 28295585 -73084936 - MIR SINE MIR -3 259 13 185 0 40 0 chr15 28295736 28295761 -73084760 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 201 39 0 0 chr15 28296655 28296681 -73083840 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 843 239 58 40 chr15 28296770 28296996 -73083525 - MER8 DNA MER2_type -8 231 2 2219 116 3 3 chr15 28297224 28297527 -73082994 + AluSx SINE Alu 1 303 -9 1800 168 3 3 chr15 28298316 28298614 -73081907 - AluJb SINE Alu -14 298 1 205 333 0 14 chr15 28298622 28298691 -73081830 - MIR SINE MIR -60 148 81 383 269 63 29 chr15 28299289 28299317 -73081204 + MIR SINE MIR 2 28 -234 2388 92 0 16 chr15 28299317 28299634 -73080887 + AluSx SINE Alu 1 312 0 383 269 63 29 chr15 28299634 28299780 -73080741 + MIR SINE MIR 28 182 -80 1753 146 7 27 chr15 28301623 28301918 -73078603 - AluJb SINE Alu -23 289 1 30 0 0 0 chr15 28301923 28301953 -73078568 + AT_rich Low_complexity Low_complexity 1 30 0 2808 77 0 3 chr15 28301953 28302302 -73078219 - L1PA5 LINE L1 -5 6149 5802 2131 33 24 0 chr15 28302302 28302607 -73077914 + L1P2 LINE L1 5218 5527 -628 363 286 93 28 chr15 28302699 28302881 -73077640 + MIR SINE MIR 69 262 0 2094 122 0 3 chr15 28303925 28304219 -73076302 + AluSx SINE Alu 1 293 -19 254 177 0 81 chr15 28304991 28305053 -73075468 + LTR36 LTR ERV1 139 195 -416 970 119 8 0 chr15 28305056 28305190 -73075331 + AluSq/x SINE Alu 1 135 -177 2337 94 0 0 chr15 28305190 28305489 -73075032 + AluSp SINE Alu 1 299 -14 473 281 88 36 chr15 28305489 28305852 -73074669 + LTR38B LTR ERV1 209 590 -20 540 159 44 0 chr15 28305895 28306008 -73074513 - L1MA4 LINE L1 -4 6296 6179 374 313 16 28 chr15 28306035 28306217 -73074304 + LTR67 LTR ERVL 327 506 -51 345 24 0 0 chr15 28306607 28306649 -73073872 + (TG)n Simple_repeat Simple_repeat 2 43 0 1579 137 16 4 chr15 28306649 28306689 -73073832 - AluSx SINE Alu -28 284 246 342 0 0 0 chr15 28306689 28306727 -73073794 + (TG)n Simple_repeat Simple_repeat 2 39 0 1579 137 16 4 chr15 28306727 28306935 -73073586 - AluSx SINE Alu -66 246 33 317 194 9 74 chr15 28307416 28307524 -73072997 + MER53 DNA DNA 1 101 -88 * 459 117 0 53 chr15 28307435 28307529 -73072992 - MER53 DNA DNA -10 179 91 334 198 33 77 chr15 28307709 28307800 -73072721 + MER21B LTR ERV1 3 89 -774 1726 217 173 37 chr15 28307978 28308260 -73072261 + MER21B LTR ERV1 133 375 -488 4244 145 14 5 chr15 28308260 28308889 -73071632 + MER41B LTR ERV1 1 635 0 1726 217 173 37 chr15 28308889 28309195 -73071326 + MER21B LTR ERV1 375 801 -62 849 107 38 8 chr15 28309704 28309835 -73070686 - L1PB1 LINE L1 -1 6150 6016 310 156 28 18 chr15 28310091 28310200 -73070321 + (TA)n Simple_repeat Simple_repeat 1 110 0 390 271 93 77 chr15 28310239 28310561 -73069960 + L1ME4a LINE L1 5575 5911 -210 2336 100 0 7 chr15 28310561 28310871 -73069650 + AluY SINE Alu 1 308 -3 390 271 93 77 chr15 28310871 28311084 -73069437 + L1ME4a LINE L1 5911 6119 -2 2080 125 10 6 chr15 28311858 28312169 -73068352 + AluSx SINE Alu 1 312 0 1484 61 10 10 chr15 28312195 28312392 -73068129 + L1PB1 LINE L1 5596 5792 -359 318 180 0 0 chr15 28312392 28312453 -73068068 + (TA)n Simple_repeat Simple_repeat 1 61 0 2777 90 14 0 chr15 28312453 28312818 -73067703 + L1PB1 LINE L1 5782 6151 0 21 0 0 0 chr15 28312818 28312839 -73067682 + AT_rich Low_complexity Low_complexity 1 21 0 194 302 103 26 chr15 28313948 28314064 -73066457 + L2 LINE L2 3148 3272 0 787 276 95 5 chr15 28314185 28314395 -73066126 - MIR SINE MIR -28 234 6 563 250 72 7 chr15 28314452 28314604 -73065917 - MER103 DNA DNA -2 164 3 240 190 101 38 chr15 28317032 28317111 -73063410 + MLT1H LTR MaLR 100 186 -226 233 245 77 0 chr15 28317254 28317345 -73063176 + MLT1I LTR MaLR 285 430 -20 268 349 60 7 chr15 28318479 28318628 -73061893 - MIR3 SINE MIR -5 203 47 438 302 22 7 chr15 28318711 28318850 -73061671 + MIR SINE MIR 17 157 -105 2143 133 7 0 chr15 28319666 28319974 -73060547 + AluSx SINE Alu 1 310 -2 1367 193 95 8 chr15 28320009 28320273 -73060248 - AluJo SINE Alu -25 287 1 22 35 0 0 chr15 28320504 28320533 -73059988 + AT_rich Low_complexity Low_complexity 1 29 0 1511 154 44 50 chr15 28321204 28321502 -73059019 - AluJb SINE Alu -16 296 1 251 160 40 0 chr15 28321535 28321585 -73058936 - L1MDb LINE L1 -5033 1376 1325 1969 131 0 33 chr15 28321612 28321918 -73058603 + AluJb SINE Alu 1 296 -16 489 241 136 51 chr15 28321919 28322214 -73058307 + L1MEc LINE L1 1259 1578 -4818 1993 216 38 24 chr15 28322252 28322799 -73057722 + L1MEc LINE L1 2449 3003 -3212 823 287 58 35 chr15 28322888 28323285 -73057236 + HAL1 LINE L1 480 885 -1622 524 253 66 58 chr15 28323329 28323586 -73056935 + LTR33 LTR ERVL 212 470 -51 1800 124 0 78 chr15 28323589 28323896 -73056625 + AluJb SINE Alu 3 285 -27 1293 306 83 10 chr15 28323979 28324483 -73056038 - ERVL LTR ERVL -2901 2863 2323 629 318 29 4 chr15 28324487 28324726 -73055795 + ERVL LTR ERVL 4754 4998 -766 401 196 81 82 chr15 28325032 28325249 -73055272 + MER58B DNA MER1_type 1 341 0 298 229 90 133 chr15 28325250 28325551 -73054970 + L1ME4a LINE L1 5590 5877 -244 1133 95 73 6 chr15 28325962 28326141 -73054380 + MER30 DNA MER1_type 2 192 -38 295 364 41 26 chr15 28326337 28326532 -73053989 + L2 LINE L2 2715 2912 -402 268 293 0 27 chr15 28327100 28327175 -73053346 + CT-rich Low_complexity Low_complexity 4 76 0 271 281 75 69 chr15 28327558 28327718 -73052803 + L2 LINE L2 3151 3311 -2 874 244 57 18 chr15 28327828 28328057 -73052464 + MIR SINE MIR 23 260 -2 289 316 75 8 chr15 28330035 28330168 -73050353 + ERVL LTR ERVL 5176 5317 -447 303 71 0 0 chr15 28330878 28330920 -73049601 + (CA)n Simple_repeat Simple_repeat 1 42 0 231 306 166 25 chr15 28331086 28331243 -73049278 + L2 LINE L2 1930 2108 -1206 659 175 169 42 chr15 28331250 28331439 -73049082 - MER20 DNA MER1_type -6 213 1 1677 287 123 13 chr15 28331439 28332346 -73048175 + L2 LINE L2 2110 3108 -205 21 0 0 0 chr15 28333772 28333793 -73046728 + AT_rich Low_complexity Low_complexity 1 21 0 3022 98 22 2 chr15 28334000 28334447 -73046074 + L1PA14 LINE L1 5706 6161 0 246 304 14 0 chr15 28334540 28334609 -73045912 + L2 LINE L2 3203 3272 0 414 331 77 17 chr15 28334656 28334943 -73045578 + L1ME4a LINE L1 5564 5867 -254 226 239 131 8 chr15 28334991 28335121 -73045400 + L1ME4a LINE L1 5964 6109 -12 21 0 0 0 chr15 28335814 28335835 -73044686 + AT_rich Low_complexity Low_complexity 1 21 0 3098 184 79 10 chr15 28335850 28336569 -73043952 + L1MB7 LINE L1 5416 6184 0 369 275 137 47 chr15 28336679 28336890 -73043631 + L1ME4a LINE L1 5669 5898 -223 23 0 0 0 chr15 28336890 28336913 -73043608 + AT_rich Low_complexity Low_complexity 1 23 0 250 292 135 22 chr15 28339639 28339824 -73040697 - L2 LINE L2 -2 3311 3106 231 36 0 0 chr15 28340089 28340117 -73040404 + (CA)n Simple_repeat Simple_repeat 1 28 0 1309 149 103 0 chr15 28340940 28341182 -73039339 + MER57A LTR ERV1 135 401 -2 221 286 175 26 chr15 28341389 28341543 -73038978 + MIR SINE MIR 86 262 0 361 299 31 67 chr15 28344530 28344724 -73035797 - MIR SINE MIR -45 217 31 2047 125 7 13 chr15 28346140 28346445 -73034076 - AluSc SINE Alu -6 303 1 492 222 170 0 chr15 28347503 28347656 -73032865 - MIR SINE MIR -6 256 78 308 293 217 29 chr15 28347661 28348006 -73032515 + L2 LINE L2 2409 2818 -496 560 317 104 7 chr15 28348387 28348879 -73031642 - MLT1K LTR MaLR -4 584 11 339 154 0 46 chr15 28349105 28349170 -73031351 - MER5B DNA MER1_type -108 70 9 353 258 195 32 chr15 28349759 28349949 -73030572 + MIR SINE MIR 41 261 -1 1062 121 7 0 chr15 28350176 28350316 -73030205 + AluSq/x SINE Alu 5 145 -168 214 250 15 44 chr15 28351664 28351732 -73028789 - L2 LINE L2 -22 3250 3185 210 296 21 7 chr15 28352534 28352622 -73027899 + GA-rich Low_complexity Low_complexity 2 144 0 2722 128 68 91 chr15 28353167 28353759 -73026762 - LTR12 LTR ERV1 -136 578 1 348 248 165 0 chr15 28354199 28354332 -73026189 - MIR SINE MIR -81 181 27 1999 96 0 116 chr15 28354402 28354746 -73025775 - AluY SINE Alu -7 304 1 251 262 105 5 chr15 28354990 28355200 -73025321 + L1ME LINE L1 5639 5869 -252 25 0 0 0 chr15 28355412 28355437 -73025084 + AT_rich Low_complexity Low_complexity 1 25 0 348 318 31 24 chr15 28355457 28355636 -73024885 + MIR SINE MIR 32 210 -52 2078 106 26 23 chr15 28355662 28355964 -73024557 + AluSx SINE Alu 1 303 -9 330 275 22 51 chr15 28357853 28357991 -73022530 + MIR3 SINE MIR 6 139 -69 351 301 116 14 chr15 28358063 28358209 -73022312 + MIR3 SINE MIR 5 165 -43 1772 165 34 3 chr15 28358566 28358863 -73021658 - AluJo SINE Alu -6 306 1 2266 112 0 0 chr15 28359334 28359629 -73020892 + AluSx SINE Alu 1 295 -17 484 225 7 106 chr15 28360497 28360648 -73019873 + L2 LINE L2 3173 3308 -5 2435 88 0 0 chr15 28361421 28361729 -73018792 + AluSx SINE Alu 2 309 -3 519 319 35 26 chr15 28362463 28362689 -73017832 + MIR SINE MIR 9 236 -26 2043 108 17 3 chr15 28363929 28364226 -73016295 + AluY SINE Alu 1 301 -10 27 29 0 0 chr15 28364618 28364652 -73015869 + AT_rich Low_complexity Low_complexity 1 34 0 387 0 0 0 chr15 28364808 28364851 -73015670 + (CA)n Simple_repeat Simple_repeat 2 44 0 243 294 160 112 chr15 28365144 28365413 -73015108 - L2 LINE L2 -75 3197 2916 449 263 81 60 chr15 28365463 28365774 -73014747 - L1MC/D LINE L1 -743 5403 5152 23 0 0 0 chr15 28365774 28365797 -73014724 + AT_rich Low_complexity Low_complexity 1 23 0 363 302 18 12 chr15 28365856 28366025 -73014496 - L1MC/D LINE L1 -1090 5056 4887 419 243 45 0 chr15 28366072 28366183 -73014338 - LTR16A LTR ERVL -5 445 330 274 310 28 7 chr15 28366467 28366609 -73013912 - LTR16A1 LTR ERVL -312 145 1 623 310 170 11 chr15 28366666 28367108 -73013413 - L3 LINE CR1 -388 1189 678 263 355 47 9 chr15 28368047 28368154 -73012367 - L2 LINE L2 0 3272 3162 2494 58 0 7 chr15 28369003 28369311 -73011210 + AluY SINE Alu 1 306 -5 922 150 0 0 chr15 28370626 28370766 -73009755 - AluSg/x SINE Alu -14 298 159 2029 115 27 3 chr15 28371549 28371844 -73008677 + AluSg SINE Alu 9 310 0 24 32 0 0 chr15 28372001 28372032 -73008489 + AT_rich Low_complexity Low_complexity 1 31 0 542 275 134 29 chr15 28373045 28373358 -73007163 + LTR33 LTR ERVL 13 358 -163 625 264 25 15 chr15 28374015 28374212 -73006309 - L1MC/D LINE L1 -1997 5811 5613 541 361 31 35 chr15 28427169 28427648 -72952873 - L3 LINE CR1 -12 1565 1089 239 264 0 0 chr15 28427867 28427920 -72952601 - LTR67 LTR ERVL -15 542 490 346 123 71 42 chr15 28431656 28431758 -72948763 + FRAM/FAM SINE Alu 26 65 -101 2212 84 44 3 chr15 28432863 28433160 -72947361 - AluSg SINE Alu -1 309 1 39 38 0 0 chr15 28433443 28433496 -72947025 + AT_rich Low_complexity Low_complexity 1 53 0 1366 133 62 8 chr15 28433502 28433743 -72946778 + MER21A LTR ERV1 11 264 -667 2429 138 45 96 chr15 28433748 28434279 -72946242 + MER21A LTR ERV1 376 879 -52 1219 135 157 26 chr15 28434453 28434683 -72945838 - AluJo SINE Alu 0 312 53 2054 132 7 0 chr15 28434731 28435055 -72945466 + AluSx SINE Alu 1 326 0 249 341 99 2 chr15 28435673 28435835 -72944686 + MIR SINE MIR 38 213 -49 1771 177 0 13 chr15 28435838 28436143 -72944378 + AluJb SINE Alu 1 301 -11 1019 94 0 0 chr15 28436461 28436589 -72943932 + AluSg SINE Alu 6 133 -177 2267 119 0 0 chr15 28436589 28436892 -72943629 + AluSg SINE Alu 1 303 -7 942 225 38 4 chr15 28437352 28437588 -72942933 - MIR SINE MIR -1 261 18 445 233 29 0 chr15 28437774 28437877 -72942644 + MIR SINE MIR 38 143 -119 2171 123 0 10 chr15 28438086 28438387 -72942134 + AluSq SINE Alu 1 298 -15 287 237 284 21 chr15 28438947 28439137 -72941384 + MIR SINE MIR 23 262 0 210 246 0 29 chr15 28439806 28439875 -72940646 + L2 LINE L2 2998 3064 -208 270 237 0 0 chr15 28440874 28440933 -72939588 + L2 LINE L2 3246 3304 -9 2492 125 71 24 chr15 28441341 28441750 -72938771 + MSTA LTR MaLR 1 428 0 1925 117 0 0 chr15 28442038 28442287 -72938234 + AluSq SINE Alu 1 249 -64 881 143 52 45 chr15 28442388 28442542 -72937979 + AluJb SINE Alu 140 294 -18 209 301 129 0 chr15 28443260 28443353 -72937168 - L3 LINE CR1 -69 1508 1404 213 39 0 0 chr15 28443613 28443639 -72936882 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 2327 73 21 0 chr15 28443641 28443928 -72936593 - AluSq SINE Alu -20 293 1 1563 197 0 3 chr15 28445341 28445641 -72934880 - AluSx SINE Alu -4 308 10 490 330 82 33 chr15 28446029 28446204 -72934317 - L2 LINE L2 -607 2707 2542 1765 167 26 16 chr15 28446204 28446510 -72934011 + AluSx SINE Alu 1 309 -3 490 330 82 33 chr15 28446510 28446819 -72933702 - L2 LINE L2 -772 2542 2199 1151 257 63 6 chr15 28448483 28448814 -72931707 + LTR33 LTR ERVL 5 354 -167 1034 58 0 0 chr15 28448936 28449057 -72931464 + AluY SINE Alu 1 121 -190 2208 114 0 3 chr15 28449769 28450068 -72930453 + AluSx SINE Alu 1 298 -14 239 261 0 11 chr15 28450207 28450299 -72930222 + (CATATA)n Simple_repeat Simple_repeat 4 94 0 1505 182 56 7 chr15 28450313 28450599 -72929922 + AluJo SINE Alu 1 300 -12 363 309 109 9 chr15 28450629 28450873 -72929648 + L2 LINE L2 2784 3055 -217 2314 85 0 3 chr15 28450925 28451218 -72929303 - AluSx SINE Alu -15 297 6 313 215 87 74 chr15 28451301 28451450 -72929071 + L2 LINE L2 3163 3313 0 206 299 0 46 chr15 28452962 28453049 -72927472 - MIR SINE MIR -110 152 70 2454 81 0 0 chr15 28454911 28455207 -72925314 - AluY SINE Alu -15 296 1 205 254 29 22 chr15 28456347 28456431 -72924090 - MIR SINE MIR -62 146 90 415 175 58 19 chr15 28457183 28457286 -72923235 - MIR SINE MIR -67 141 35 2250 91 0 24 chr15 28457748 28458044 -72922477 - AluSg SINE Alu -21 289 1 1065 106 0 0 chr15 28458351 28458492 -72922029 + AluSg/x SINE Alu 164 304 -8 645 176 14 179 chr15 28458496 28458786 -72921735 - MER33 DNA MER1_type -28 296 55 4082 231 44 42 chr15 28458849 28459405 -72921116 + L1 LINE L1 1841 2394 -3752 2547 66 0 3 chr15 28459405 28459709 -72920812 + AluY SINE Alu 1 303 -8 4082 231 44 42 chr15 28459709 28459789 -72920732 + L1 LINE L1 2394 2472 -3674 2314 113 0 3 chr15 28459789 28460091 -72920430 + AluSx SINE Alu 1 301 -11 4082 231 44 42 chr15 28460091 28460475 -72920046 + L1 LINE L1 2472 2854 -3292 2259 109 3 0 chr15 28460475 28460778 -72919743 + AluSp SINE Alu 1 304 -9 4082 231 44 42 chr15 28460778 28460866 -72919655 + L1 LINE L1 2854 2940 -3206 7457 44 3 3 chr15 28460866 28462047 -72918474 + L1PA5 LINE L1 4974 6154 0 4082 231 44 42 chr15 28462047 28462464 -72918057 + L1 LINE L1 2940 3355 -2791 2025 134 3 14 chr15 28462464 28462754 -72917767 + AluJb SINE Alu 3 289 -23 546 57 0 0 chr15 28462757 28462827 -72917694 + (GA)n Simple_repeat Simple_repeat 1 70 0 4082 231 44 42 chr15 28462827 28462953 -72917568 + L1 LINE L1 3356 3600 -2546 22 0 0 0 chr15 28463283 28463305 -72917216 + AT_rich Low_complexity Low_complexity 1 22 0 530 203 64 119 chr15 28463353 28463383 -72917138 + MER102a DNA MER1_type 94 124 -1293 2097 133 0 3 chr15 28463383 28463677 -72916844 - AluSx SINE Alu -11 301 9 530 203 64 119 chr15 28463677 28463897 -72916624 + MER102a DNA MER1_type 124 330 0 1718 173 4 0 chr15 28464056 28464322 -72916199 - AluJb SINE Alu -44 268 2 2471 64 0 3 chr15 28464953 28465248 -72915273 + AluY SINE Alu 1 294 -17 304 189 0 0 chr15 28465556 28465609 -72914912 + MSTC LTR MaLR 79 131 -243 1653 165 146 19 chr15 28465629 28465992 -72914529 - MSTA LTR MaLR -19 409 1 733 195 102 29 chr15 28466003 28466208 -72914313 + MSTC LTR MaLR 179 398 -30 254 186 0 0 chr15 28466271 28466314 -72914207 + MSTC LTR MaLR 354 396 0 907 236 10 5 chr15 28466369 28466564 -72913957 - MER20 DNA MER1_type -2 217 22 2479 64 14 0 chr15 28468192 28468487 -72912034 + AluSp SINE Alu 1 299 -14 26 50 0 0 chr15 28468843 28468883 -72911638 + AT_rich Low_complexity Low_complexity 1 40 0 2253 114 3 13 chr15 28468899 28469214 -72911307 + AluSp SINE Alu 1 312 -1 2266 112 0 0 chr15 28469343 28469637 -72910884 + AluSx SINE Alu 1 294 -18 1434 221 89 35 chr15 28470555 28470981 -72909540 + LTR40c LTR ERVL 9 457 -8 560 262 77 27 chr15 28471944 28472165 -72908356 - LTR33 LTR ERVL -269 252 21 261 0 0 0 chr15 28472197 28472226 -72908295 + (CACAG)n Simple_repeat Simple_repeat 1 29 0 288 127 0 0 chr15 28472256 28472311 -72908210 + (TA)n Simple_repeat Simple_repeat 1 55 0 488 158 12 12 chr15 28472361 28472443 -72908078 + LTR41 LTR ERVL 99 180 -593 2280 152 29 31 chr15 28472866 28473319 -72907202 + L1MB4 LINE L1 5715 6166 -14 229 129 0 0 chr15 28473454 28473485 -72907036 + Alu SINE Alu 1 31 -270 1791 177 44 25 chr15 28473585 28474106 -72906415 - L1M3 LINE L1 -683 5485 4942 20831 142 23 59 chr15 28474118 28474631 -72905890 - L1MA1 LINE L1 0 7721 7191 2220 129 0 3 chr15 28474631 28474940 -72905581 - AluSx SINE Alu -3 309 2 20831 142 23 59 chr15 28474940 28475409 -72905112 - L1MA1 LINE L1 -530 7191 6707 1918 121 0 4 chr15 28475409 28475666 -72904855 - AluSx SINE Alu -22 290 35 20831 142 23 59 chr15 28475666 28476225 -72904296 - L1MA1 LINE L1 -1014 6707 6130 2034 148 10 3 chr15 28476225 28476530 -72903991 - AluSx SINE Alu -5 307 1 20831 142 23 59 chr15 28476530 28478980 -72901541 - L1MA1 LINE L1 -1591 6130 3595 498 33 0 0 chr15 28478980 28479040 -72901481 + (TG)n Simple_repeat Simple_repeat 2 61 0 20831 142 23 59 chr15 28479040 28479053 -72901468 - L1MA1 LINE L1 -4126 3595 3583 2050 134 0 7 chr15 28479053 28479351 -72901170 - AluSx SINE Alu -16 296 1 20831 142 23 59 chr15 28479351 28480669 -72899852 - L1MA1 LINE L1 -4138 3583 2220 186 43 0 0 chr15 28480669 28480692 -72899829 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2061 129 0 0 chr15 28480693 28480973 -72899548 - AluSx SINE Alu -32 280 1 20831 142 23 59 chr15 28480973 28483672 -72896849 - L1MA1 LINE L1 -5500 2221 12 1440 215 4 0 chr15 28483671 28483945 -72896576 - L1M3 LINE L1 -1188 4958 4684 * 1601 98 0 0 chr15 28484045 28484248 -72896273 - AluSx SINE Alu -109 203 1 1779 188 10 39 chr15 28484248 28484637 -72895884 + L1MB1 LINE L1 5791 6168 -21 782 179 0 26 chr15 28484689 28484845 -72895676 + L1MA10 LINE L1 6180 6331 -3 769 151 0 32 chr15 28485026 28485152 -72895369 + AluJb SINE Alu 3 124 -188 24 32 0 0 chr15 28485152 28485183 -72895338 + AT_rich Low_complexity Low_complexity 1 31 0 3570 271 146 23 chr15 28485183 28486070 -72894451 - L2 LINE L2 -90 3223 2446 2578 43 0 3 chr15 28486070 28486374 -72894147 + AluY SINE Alu 1 303 -8 3570 271 146 23 chr15 28486374 28487234 -72893287 - L2 LINE L2 -867 2446 1275 338 260 70 0 chr15 28487237 28487337 -72893184 - MIR SINE MIR -40 222 116 642 329 99 20 chr15 28488158 28488502 -72892019 + L2 LINE L2 2943 3313 0 250 209 0 0 chr15 28488529 28488572 -72891949 + MIR SINE MIR 196 238 -24 205 301 134 92 chr15 28489216 28489249 -72891272 + L2 LINE L2 2592 2622 -692 531 232 18 9 chr15 28489249 28489361 -72891160 + MER81 DNA DNA 1 113 -1 205 301 134 92 chr15 28489361 28489499 -72891022 + L2 LINE L2 2622 2753 -561 2044 137 0 7 chr15 28489499 28489805 -72890716 - AluSx SINE Alu -8 304 1 205 301 134 92 chr15 28489805 28489991 -72890530 + L2 LINE L2 2753 2965 -349 596 259 36 106 chr15 28490290 28490451 -72890070 - L2 LINE L2 -459 2855 2719 2421 99 0 3 chr15 28490451 28490764 -72889757 - AluSq SINE Alu -1 312 1 596 259 36 106 chr15 28490764 28490876 -72889645 - L2 LINE L2 -595 2719 2601 190 361 115 8 chr15 28491416 28491538 -72888983 + L2 LINE L2 2911 3045 -227 482 320 141 2 chr15 28491597 28491803 -72888718 - MIR SINE MIR -2 260 30 516 242 83 0 chr15 28491936 28492093 -72888428 + MIR SINE MIR 80 249 -13 254 282 126 10 chr15 28492084 28492187 -72888334 - L2 LINE L2 -2 3311 3197 * 253 320 68 10 chr15 28492220 28492323 -72888198 + L2 LINE L2 3162 3270 -2 935 256 99 50 chr15 28492451 28493076 -72887445 + HAL1b LINE L1 692 1347 -1 2130 138 0 10 chr15 28493246 28493558 -72886963 - AluSx SINE Alu -3 309 1 21 0 0 0 chr15 28494143 28494164 -72886357 + AT_rich Low_complexity Low_complexity 1 21 0 2316 102 3 0 chr15 28494323 28494626 -72885895 - AluSq SINE Alu -9 304 1 1038 103 21 0 chr15 28495962 28496158 -72884363 - AluSg/x SINE Alu 0 333 135 388 253 55 12 chr15 28497466 28497583 -72882938 + MIR SINE MIR 5 125 -125 465 19 0 0 chr15 28497600 28497654 -72882867 + (GA)n Simple_repeat Simple_repeat 1 54 0 292 242 30 45 chr15 28497893 28498025 -72882496 + L1ME3 LINE L1 601 730 -5340 * 1208 254 72 47 chr15 28498014 28498486 -72882035 - L1ME LINE L1 -5546 524 41 486 243 185 0 chr15 28498548 28498737 -72881784 + L1ME3 LINE L1 4076 4299 -1781 868 115 0 0 chr15 28498741 28498854 -72881667 + AluJo/FLAM SINE Alu 6 118 -194 1973 107 52 42 chr15 28498854 28499163 -72881358 - AluSx SINE Alu 0 312 1 1921 239 120 55 chr15 28499169 28499373 -72881148 + L1ME3 LINE L1 4255 4444 -1652 1606 186 3 16 chr15 28499373 28499680 -72880841 - AluJo SINE Alu -9 303 1 1921 239 120 55 chr15 28499680 28501208 -72879313 + L1ME3 LINE L1 4444 6095 -1 2099 109 0 0 chr15 28501465 28501739 -72878782 + AluSq SINE Alu 1 274 -39 2055 92 0 0 chr15 28502470 28502741 -72877780 - L1MA3 LINE L1 0 6305 6035 2547 50 0 3 chr15 28503072 28503372 -72877149 - AluY SINE Alu -12 299 1 336 303 21 49 chr15 28503779 28503977 -72876544 - MIR SINE MIR -68 194 7 183 80 0 0 chr15 28503994 28504019 -72876502 + (T)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr15 28504188 28504211 -72876310 + AT_rich Low_complexity Low_complexity 1 23 0 2520 119 31 3 chr15 28504801 28505155 -72875366 + THE1B LTR MaLR 1 364 0 2838 127 25 14 chr15 28505225 28505666 -72874855 - Tigger2 DNA MER2_type 0 2718 2273 414 174 0 0 chr15 28505656 28505725 -72874796 - Tigger2 DNA MER2_type -2649 69 1 * 544 254 29 14 chr15 28505725 28505863 -72874658 - MIR SINE MIR -76 186 47 270 81 0 0 chr15 28507405 28507442 -72873079 + (T)n Simple_repeat Simple_repeat 1 37 0 5577 135 65 19 chr15 28507753 28509193 -72871328 + L1MA4A LINE L1 4796 6300 -3 2002 146 3 3 chr15 28509652 28509960 -72870561 + AluSx SINE Alu 1 308 -4 1359 213 80 0 chr15 28509971 28510093 -72870428 + AluJo SINE Alu 1 112 -200 208 0 0 59 chr15 28510093 28510127 -72870394 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1359 213 80 0 chr15 28510127 28510267 -72870254 + AluJo SINE Alu 112 284 -28 1673 188 24 30 chr15 28510287 28510622 -72869899 + L1PA16 LINE L1 5817 6149 -17 366 23 0 0 chr15 28510641 28510684 -72869837 + (TG)n Simple_repeat Simple_repeat 2 44 0 2107 127 0 0 chr15 28510684 28510968 -72869553 - AluSx SINE Alu -28 284 1 434 167 94 10 chr15 28511080 28511176 -72869345 + MER104 DNA Tc2 74 177 -3 2369 103 0 3 chr15 28511179 28511481 -72869040 - AluSx SINE Alu -11 301 1 316 339 28 0 chr15 28511493 28511602 -72868919 + MIR SINE MIR 103 214 -48 799 246 119 25 chr15 28511602 28511846 -72868675 - MLT1D LTR MaLR -190 315 49 1234 202 107 12 chr15 28511864 28512191 -72868330 + MLT1A1 LTR MaLR 1 358 -7 233 143 0 0 chr15 28512543 28512578 -72867943 - MER5B DNA MER1_type 0 178 144 711 221 0 88 chr15 28512847 28513051 -72867470 + MER51C LTR ERV1 453 638 -2 539 193 126 30 chr15 28513051 28513186 -72867335 + MER5B DNA MER1_type 28 175 -3 1968 173 40 12 chr15 28514821 28515167 -72865354 - MLT1A1 LTR MaLR 0 365 10 1778 156 10 7 chr15 28515578 28515873 -72864648 + AluSx SINE Alu 1 296 -16 259 221 73 29 chr15 28516560 28516628 -72863893 + L2 LINE L2 3234 3304 -9 2126 96 7 14 chr15 28516682 28516964 -72863557 - AluSx SINE Alu -32 280 1 290 253 273 40 chr15 28517153 28517303 -72863218 - MIR3 SINE MIR -3 205 21 934 324 116 49 chr15 28517802 28518472 -72862049 + L3 LINE CR1 739 1453 -124 1773 141 11 11 chr15 28518511 28518824 -72861697 + AluSx SINE Alu 1 313 0 438 175 0 0 chr15 28518824 28518887 -72861634 - AluJo/FLAM SINE Alu -196 116 54 * 801 180 23 0 chr15 28518883 28519011 -72861510 + AluJb SINE Alu 164 294 -18 340 129 79 99 chr15 28519478 28519579 -72860942 - LTR33 LTR ERVL 0 521 423 831 264 206 6 chr15 28519593 28519938 -72860583 + L2 LINE L2 2900 3313 0 447 129 24 24 chr15 28520154 28520239 -72860282 - L1 LINE L1 -1563 4583 4499 212 211 28 0 chr15 28521535 28521606 -72858915 + (TA)n Simple_repeat Simple_repeat 2 74 0 496 271 77 6 chr15 28523160 28523330 -72857191 - MLT1L LTR MaLR -40 575 394 6509 38 4 5 chr15 28523380 28524154 -72856367 - L1PA5 LINE L1 0 6154 5382 371 270 43 0 chr15 28524196 28524311 -72856210 - MLT1L LTR MaLR -350 265 146 1856 144 0 29 chr15 28524673 28524986 -72855535 - AluSx SINE Alu -8 304 1 361 351 45 0 chr15 28525208 28525342 -72855179 - MIR3 SINE MIR -39 169 30 206 302 80 107 chr15 28525906 28526280 -72854241 - L2 LINE L2 -2 3270 2907 2344 106 3 0 chr15 28526294 28526605 -72853916 - AluSq SINE Alu -1 312 1 326 228 36 133 chr15 28527631 28527854 -72852667 - MLT1F LTR MaLR -2 593 197 473 170 36 27 chr15 28528270 28528382 -72852139 - L1PB4 LINE L1 -1 6155 6043 182 36 0 36 chr15 28528388 28528416 -72852105 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 2521 64 0 6 chr15 28528444 28528756 -72851765 - AluY SINE Alu -1 310 1 1744 190 98 86 chr15 28529275 28529653 -72850868 - L1MC4 LINE L1 0 8042 7653 4905 105 6 42 chr15 28529653 28530374 -72850147 + L1PA10 LINE L1 5474 6168 0 1744 190 98 86 chr15 28530374 28530533 -72849988 - L1MC4 LINE L1 -389 7653 7498 1825 105 0 0 chr15 28530536 28530775 -72849746 - AluSc SINE Alu -70 239 1 2629 111 25 8 chr15 28531074 28531442 -72849079 + THE1C LTR MaLR 1 374 -1 463 299 110 35 chr15 28531523 28531777 -72848744 + L3 LINE CR1 231 503 -1074 532 331 42 27 chr15 28532480 28532812 -72847709 + L3 LINE CR1 531 867 -710 370 303 85 69 chr15 28532842 28533231 -72847290 + L2 LINE L2 2864 3258 -14 281 293 128 37 chr15 28533633 28533797 -72846724 + L3 LINE CR1 868 1046 -531 316 313 85 45 chr15 28533898 28534074 -72846447 + MIR SINE MIR 64 246 -16 382 248 87 101 chr15 28534944 28535093 -72845428 - MIR SINE MIR -81 181 35 2091 114 0 65 chr15 28535227 28535552 -72844969 + AluSx SINE Alu 1 304 -8 642 197 14 27 chr15 28535705 28535852 -72844669 - L2 LINE L2 -2 3311 3167 259 319 0 21 chr15 28539356 28539450 -72841071 + CT-rich Low_complexity Low_complexity 1 92 0 3329 176 22 5 chr15 28540708 28540762 -72839759 + MER50 LTR ERV1 1 53 -681 464 0 18 0 chr15 28540762 28540818 -72839703 + (CA)n Simple_repeat Simple_repeat 1 57 0 3329 176 22 5 chr15 28540818 28541365 -72839156 + MER50 LTR ERV1 53 612 -122 916 51 0 58 chr15 28541371 28541508 -72839013 - AluYa5/8 SINE Alu -8 303 175 871 153 7 7 chr15 28541509 28541653 -72838868 + MER50 LTR ERV1 568 711 -23 445 293 40 20 chr15 28541912 28542062 -72838459 + MIR SINE MIR 87 239 -23 219 36 0 0 chr15 28542693 28542721 -72837800 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1667 170 33 0 chr15 28542722 28542992 -72837529 - AluJo SINE Alu -33 279 1 597 326 94 4 chr15 28543104 28543337 -72837184 + MIR SINE MIR 8 261 -1 1281 173 0 0 chr15 28543345 28543547 -72836974 - AluJo SINE Alu -26 286 85 2267 131 47 33 chr15 28543754 28544113 -72836408 - THE1B LTR MaLR 0 364 1 4434 217 76 10 chr15 28544681 28546095 -72834426 - L1MD2 LINE L1 -10 6349 4842 2143 121 0 16 chr15 28546528 28546833 -72833688 + AluSx SINE Alu 1 300 -12 1299 126 0 0 chr15 28546847 28547030 -72833491 + AluSq SINE Alu 129 311 -2 2175 119 0 6 chr15 28547079 28547444 -72833077 + AluSx SINE Alu 1 363 0 240 295 13 13 chr15 28548430 28548508 -72832013 + L1M1 LINE L1 5508 5585 -720 531 246 129 29 chr15 28548511 28548875 -72831646 + L1ME3A LINE L1 5559 5946 -216 2373 110 3 53 chr15 28548890 28549245 -72831276 - MER1B DNA MER1_type 0 337 1 557 277 218 11 chr15 28549415 28549686 -72830835 + MLT1G1 LTR MaLR 245 571 -24 2456 58 3 0 chr15 28549814 28550108 -72830413 + AluY SINE Alu 1 295 -16 356 269 11 11 chr15 28551028 28551121 -72829400 - MIR SINE MIR -119 143 51 1429 175 75 56 chr15 28551798 28551925 -72828596 - Charlie1 DNA MER1_type 0 2761 2638 2704 39 3 0 chr15 28551925 28552234 -72828287 + AluY SINE Alu 1 310 -1 1429 175 75 56 chr15 28552234 28552517 -72828004 - Charlie1 DNA MER1_type -123 2638 2343 330 250 0 0 chr15 28552515 28552579 -72827942 - Charlie1 DNA MER1_type -2690 71 8 * 203 61 30 0 chr15 28553273 28553306 -72827215 + (CA)n Simple_repeat Simple_repeat 2 35 0 1290 192 73 52 chr15 28553307 28553635 -72826886 - MLT2C1 LTR ERVL -55 342 8 707 278 71 39 chr15 28554223 28554478 -72826043 + MLT1E LTR MaLR 14 276 -317 621 186 79 21 chr15 28554488 28554628 -72825893 + MIR SINE MIR 94 241 -21 2563 49 0 0 chr15 28555259 28555563 -72824958 - AluY SINE Alu -7 304 1 225 0 0 0 chr15 28555595 28555620 -72824901 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 434 267 57 51 chr15 28556088 28556174 -72824347 + MIR SINE MIR 1 85 -177 2570 59 0 0 chr15 28556174 28556480 -72824041 - AluY SINE Alu -5 306 1 434 267 57 51 chr15 28556480 28556569 -72823952 + MIR SINE MIR 85 177 -85 1392 223 176 0 chr15 28557431 28557754 -72822767 + LTR16C LTR ERVL 100 479 -12 361 280 43 109 chr15 28557783 28557814 -72822707 - MIR SINE MIR -34 228 197 2043 123 10 3 chr15 28557814 28558116 -72822405 + AluSc SINE Alu 1 304 -5 361 280 43 109 chr15 28558116 28558295 -72822226 - MIR SINE MIR -65 197 32 200 35 35 0 chr15 28558490 28558519 -72822002 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 417 338 113 30 chr15 28558685 28559152 -72821369 - L2 LINE L2 -881 2433 1928 2510 119 8 45 chr15 28559256 28559634 -72820887 + THE1B LTR MaLR 1 364 0 335 269 138 62 chr15 28560044 28560204 -72820317 + MIR3 SINE MIR 16 187 -21 198 174 0 0 chr15 28560233 28560279 -72820242 + GA-rich Low_complexity Low_complexity 1 46 0 224 310 158 25 chr15 28561645 28561803 -72818718 - MIR SINE MIR -34 228 50 362 195 11 0 chr15 28562185 28562272 -72818249 + GA-rich Low_complexity Low_complexity 2 89 0 540 332 157 57 chr15 28564222 28564612 -72815909 + L3 LINE CR1 117 467 -1110 968 104 0 28 chr15 28564612 28564756 -72815765 - L1PA15 LINE L1 -3 6162 6023 540 332 157 57 chr15 28564756 28565033 -72815488 + L3 LINE CR1 467 715 -862 303 49 0 0 chr15 28565033 28565074 -72815447 + (CA)n Simple_repeat Simple_repeat 2 42 0 2234 75 3 37 chr15 28565076 28565370 -72815151 - AluSp SINE Alu -25 288 5 540 332 157 57 chr15 28565370 28565845 -72814676 + L3 LINE CR1 715 1378 -199 307 296 12 0 chr15 28568450 28568531 -72811990 - L3b LINE CR1 -217 1366 1285 356 291 78 48 chr15 28570595 28570801 -72809720 + L2 LINE L2 3098 3309 -4 495 87 0 0 chr15 28571688 28571757 -72808764 + (TTTTC)n Simple_repeat Simple_repeat 1 69 0 214 91 0 91 chr15 28571770 28571814 -72808707 + (CCCCCT)n Simple_repeat Simple_repeat 1 40 0 468 51 0 0 chr15 28571814 28571873 -72808648 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 1898 171 0 7 chr15 28571878 28572188 -72808333 - AluJb SINE Alu -4 308 1 466 348 70 61 chr15 28572383 28572840 -72807681 - L2 LINE L2 -3 3269 2809 237 98 0 0 chr15 28573775 28573816 -72806705 + (CCTG)n Simple_repeat Simple_repeat 2 42 0 237 352 56 0 chr15 28574121 28574229 -72806292 + L2 LINE L2 3191 3304 -9 240 346 6 19 chr15 28574877 28575039 -72805482 + CT-rich Low_complexity Low_complexity 2 161 0 197 98 24 0 chr15 28577115 28577156 -72803365 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 302 152 221 70 chr15 28577652 28577810 -72802711 + L1MEc LINE L1 1561 1742 -4654 634 304 103 43 chr15 28578311 28578922 -72801599 + L1MEc LINE L1 2439 3086 -3129 623 236 45 28 chr15 28578925 28579103 -72801418 - MER58A DNA MER1_type -3 221 41 3354 139 29 27 chr15 28579103 28579664 -72800857 + L1P LINE L1 3463 4024 -2122 203 61 30 0 chr15 28579941 28579974 -72800547 + (CA)n Simple_repeat Simple_repeat 2 35 0 1308 191 73 52 chr15 28579975 28580305 -72800216 - MLT2C1 LTR ERVL -55 342 6 707 278 71 39 chr15 28580891 28581146 -72799375 + MLT1E LTR MaLR 14 276 -317 642 189 56 21 chr15 28581156 28581299 -72799222 + MIR SINE MIR 94 241 -21 2593 46 0 0 chr15 28581930 28582234 -72798287 - AluY SINE Alu -7 304 1 225 0 0 0 chr15 28582266 28582291 -72798230 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 434 267 57 51 chr15 28582759 28582845 -72797676 + MIR SINE MIR 1 85 -177 2559 62 0 0 chr15 28582845 28583151 -72797370 - AluY SINE Alu -5 306 1 434 267 57 51 chr15 28583151 28583240 -72797281 + MIR SINE MIR 85 177 -85 1392 223 176 0 chr15 28584102 28584425 -72796096 + LTR16C LTR ERVL 100 479 -12 361 280 43 109 chr15 28584454 28584485 -72796036 - MIR SINE MIR -34 228 197 2043 123 10 3 chr15 28584485 28584787 -72795734 + AluSc SINE Alu 1 304 -5 361 280 43 109 chr15 28584787 28584966 -72795555 - MIR SINE MIR -65 197 32 200 35 35 0 chr15 28585161 28585190 -72795331 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 417 338 113 30 chr15 28585356 28585823 -72794698 - L2 LINE L2 -881 2433 1928 2533 116 8 45 chr15 28585927 28586305 -72794216 + THE1B LTR MaLR 1 364 0 335 269 138 62 chr15 28586715 28586875 -72793646 + MIR3 SINE MIR 16 187 -21 198 174 0 0 chr15 28586904 28586950 -72793571 + GA-rich Low_complexity Low_complexity 1 46 0 224 310 158 25 chr15 28588316 28588474 -72792047 - MIR SINE MIR -34 228 50 362 195 11 0 chr15 28588856 28588943 -72791578 + GA-rich Low_complexity Low_complexity 2 89 0 527 333 157 57 chr15 28590893 28591283 -72789238 + L3 LINE CR1 117 467 -1110 939 111 0 28 chr15 28591283 28591427 -72789094 - L1PA15 LINE L1 -3 6162 6023 527 333 157 57 chr15 28591427 28591704 -72788817 + L3 LINE CR1 467 715 -862 387 0 0 0 chr15 28591704 28591747 -72788774 + (CA)n Simple_repeat Simple_repeat 2 44 0 2219 78 3 37 chr15 28591749 28592043 -72788478 - AluSp SINE Alu -25 288 5 527 333 157 57 chr15 28592043 28592518 -72788003 + L3 LINE CR1 715 1378 -199 831 78 21 0 chr15 28593263 28593405 -72787116 + (TC)n Simple_repeat Simple_repeat 2 146 0 432 0 0 0 chr15 28593407 28593455 -72787066 + (CA)n Simple_repeat Simple_repeat 1 48 0 231 152 0 0 chr15 28593874 28593920 -72786601 + GA-rich Low_complexity Low_complexity 1 46 0 314 215 43 43 chr15 28594916 28595009 -72785512 + MIR SINE MIR 49 141 -121 182 225 25 0 chr15 28596182 28596222 -72784299 - MIR SINE MIR -126 136 96 2456 68 0 0 chr15 28597591 28597900 -72782621 + AluY SINE Alu 1 309 -2 808 218 35 0 chr15 28603593 28603767 -72776754 + MIR SINE MIR 83 262 0 219 275 23 23 chr15 28604810 28604917 -72775604 + MIR SINE MIR 86 191 -71 2302 161 61 17 chr15 28605105 28605514 -72775007 - MSTA LTR MaLR 0 428 2 3356 136 26 28 chr15 28605689 28606261 -72774260 - MER49 LTR ERV1 -352 571 1 220 313 176 38 chr15 28607320 28607451 -72773070 + MIR SINE MIR 1 149 -113 2077 106 3 7 chr15 28607609 28607902 -72772619 + AluSg SINE Alu 1 292 -18 186 133 0 0 chr15 28608078 28608108 -72772413 + (TATATG)n Simple_repeat Simple_repeat 3 32 0 798 226 62 54 chr15 28608158 28608460 -72772061 - L1ME3A LINE L1 -28 6142 5837 544 228 63 8 chr15 28608461 28608588 -72771933 - MER94 DNA DNA 0 134 1 23 0 0 0 chr15 28609551 28609574 -72770947 + AT_rich Low_complexity Low_complexity 1 23 0 402 210 160 8 chr15 28610059 28610178 -72770343 + L1ME4a LINE L1 5944 6080 -41 367 321 80 12 chr15 28612497 28612659 -72767862 - MIR SINE MIR -70 192 20 456 298 73 7 chr15 28613119 28613270 -72767251 + MIR SINE MIR 20 180 -82 1061 310 35 32 chr15 28613863 28614327 -72766194 - MLT1K LTR MaLR 0 588 124 354 259 256 39 chr15 28614974 28615090 -72765431 - L2 LINE L2 -9 3304 3214 1430 188 25 121 chr15 28615090 28615494 -72765027 - MLT1A1 LTR MaLR 0 365 1 354 259 256 39 chr15 28615494 28615799 -72764722 - L2 LINE L2 -99 3214 2740 361 173 39 19 chr15 28616165 28616219 -72764302 + MER53 DNA DNA 1 52 -137 4553 128 42 4 chr15 28616219 28616935 -72763586 - L1PA16 LINE L1 0 6166 5424 361 173 39 19 chr15 28616935 28616984 -72763537 + MER53 DNA DNA 52 106 -83 620 79 0 0 chr15 28617409 28617485 -72763036 - L1PA3 LINE L1 -19 6136 6061 188 67 33 0 chr15 28617489 28617519 -72763002 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 805 207 171 56 chr15 28617611 28617915 -72762606 - L1MEc LINE L1 -6014 382 44 2534 119 28 0 chr15 28618959 28619313 -72761208 - THE1B LTR MaLR 0 364 1 2150 64 50 3 chr15 28622358 28622640 -72757881 - AluY SINE Alu -16 295 1 1536 159 49 19 chr15 28622760 28623068 -72757453 + MER33 DNA MER1_type 6 322 -2 22 0 0 0 chr15 28623247 28623269 -72757252 + AT_rich Low_complexity Low_complexity 1 22 0 8859 171 27 11 chr15 28623470 28626118 -72754403 - L1PA16 LINE L1 -22 6144 3472 8173 115 18 12 chr15 28627456 28629591 -72750930 + L1PA12 LINE L1 4020 6167 -1 21 0 0 0 chr15 28629596 28629617 -72750904 + AT_rich Low_complexity Low_complexity 1 21 0 325 249 140 62 chr15 28629731 28629924 -72750597 + L1M4 LINE L1 3012 3219 -2927 1935 107 52 0 chr15 28630050 28630322 -72750199 + AluSx SINE Alu 21 306 -6 528 200 0 0 chr15 28630322 28630432 -72750089 + GA-rich Low_complexity Low_complexity 1 110 0 2495 49 7 10 chr15 28630655 28630963 -72749558 + AluY SINE Alu 1 307 -4 693 266 49 84 chr15 28630964 28631561 -72748960 + L1M4 LINE L1 3227 3802 -2344 587 234 111 19 chr15 28631548 28631766 -72748755 + L1P3 LINE L1 5545 5791 -363 * 355 181 296 82 chr15 28631787 28631815 -72748706 - MER4C LTR ERV1 -18 447 426 2512 68 0 3 chr15 28631815 28632125 -72748396 - AluY SINE Alu -2 309 1 355 181 296 82 chr15 28632125 28632339 -72748182 - MER4C LTR ERV1 -39 426 153 * 1352 139 133 51 chr15 28632309 28632625 -72747896 - MER4A LTR ERV1 -322 342 1 279 241 161 43 chr15 28632629 28632791 -72747730 + L1ME3A LINE L1 5782 5962 -208 419 300 58 90 chr15 28633184 28633488 -72747033 - L2 LINE L2 -601 2713 2424 2657 30 0 0 chr15 28633488 28633785 -72746736 + AluY SINE Alu 1 297 -14 419 300 58 90 chr15 28633785 28633890 -72746631 - L2 LINE L2 -890 2424 2317 293 244 57 148 chr15 28634300 28634319 -72746202 + MIR3 SINE MIR 35 54 -154 2192 133 52 42 chr15 28634319 28634704 -72745817 - MLT1B LTR MaLR -1 389 1 293 244 57 148 chr15 28634704 28634816 -72745705 + MIR3 SINE MIR 54 175 -33 641 164 158 64 chr15 28634816 28634919 -72745602 - MER5A DNA MER1_type -2 187 95 2205 123 0 0 chr15 28634919 28635219 -72745302 - AluSx SINE Alu -12 300 1 641 164 158 64 chr15 28635219 28635256 -72745265 - MER5A DNA MER1_type -94 95 63 198 0 0 0 chr15 28635256 28635278 -72745243 + (CTG)n Simple_repeat Simple_repeat 2 23 0 641 164 158 64 chr15 28635278 28635307 -72745214 - MER5A DNA MER1_type -126 63 1 293 244 57 148 chr15 28635307 28635350 -72745171 + MIR3 SINE MIR 175 194 -14 879 203 19 57 chr15 28635379 28635591 -72744930 - MER105 DNA DNA 0 204 1 394 294 49 60 chr15 28635733 28635917 -72744604 - MIR3 SINE MIR -15 193 12 28 0 0 0 chr15 28637194 28637222 -72743299 + AT_rich Low_complexity Low_complexity 1 28 0 181 298 0 0 chr15 28638701 28638758 -72741763 + L3 LINE CR1 782 838 -739 437 292 22 36 chr15 28638830 28638967 -72741554 - MIR SINE MIR -55 153 19 267 204 0 0 chr15 28639100 28639149 -72741372 - L2 LINE L2 0 3313 3265 606 153 0 0 chr15 28639242 28639327 -72741194 - AluJb SINE Alu -26 286 202 704 161 0 9 chr15 28640742 28640854 -72739667 + AluJo SINE Alu 42 152 -160 10421 171 32 22 chr15 28640866 28641331 -72739190 - L1MC3 LINE L1 -394 7391 6932 2250 45 4 4 chr15 28641331 28641598 -72738923 - AluY SINE Alu -16 295 29 10421 171 32 22 chr15 28641598 28642346 -72738175 - L1MC3 LINE L1 -853 6932 6193 2263 107 3 3 chr15 28642346 28642656 -72737865 - AluSq SINE Alu -3 310 1 10421 171 32 22 chr15 28642656 28643460 -72737061 - L1MC3 LINE L1 -1592 6193 5353 5290 24 15 0 chr15 28643476 28644061 -72736460 - L1PA3 LINE L1 0 6155 5562 16376 29 2 0 chr15 28644061 28645990 -72734531 + L1P LINE L1 2409 4341 -1805 535 163 69 124 chr15 28645981 28646214 -72734307 - L1MC3 LINE L1 -779 5367 5148 * 652 338 26 30 chr15 28647096 28647398 -72733123 - L2 LINE L2 -526 2788 2488 395 206 163 0 chr15 28647412 28647504 -72733017 - MER81 DNA DNA -7 107 1 2288 93 7 3 chr15 28648781 28649081 -72731440 + AluSq SINE Alu 1 301 -12 371 306 32 0 chr15 28649296 28649420 -72731101 - MIR SINE MIR -80 182 55 202 260 122 41 chr15 28649885 28650008 -72730513 - L2 LINE L2 -994 2320 2188 291 370 44 6 chr15 28650014 28650195 -72730326 + MIR SINE MIR 8 195 -67 277 259 35 0 chr15 28650453 28650538 -72729983 + MIR SINE MIR 105 192 -70 502 45 15 0 chr15 28651512 28651578 -72728943 + MER41B LTR ERV1 481 547 -88 350 272 197 19 chr15 28651953 28652111 -72728410 + MIR SINE MIR 1 187 -62 215 111 0 28 chr15 28652747 28652783 -72727738 - MIR SINE MIR -19 243 209 1056 266 80 77 chr15 28652920 28653473 -72727048 + L2 LINE L2 2520 3070 -243 378 0 0 0 chr15 28653473 28653515 -72727006 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2294 57 0 11 chr15 28653517 28653800 -72726721 - AluY SINE Alu -31 280 1 1056 266 80 77 chr15 28653800 28654015 -72726506 + L2 LINE L2 3070 3291 -22 1860 234 82 26 chr15 28654025 28654526 -72725995 - L1ME1 LINE L1 -9 6157 5629 334 325 26 0 chr15 28654547 28654661 -72725860 - MIR SINE MIR -121 141 25 504 326 22 11 chr15 28655618 28655799 -72724722 - MER5A DNA MER1_type 0 189 7 498 243 0 0 chr15 28656178 28656281 -72724240 + MIR SINE MIR 159 261 -1 270 73 0 0 chr15 28656293 28656334 -72724187 + (CAG)n Simple_repeat Simple_repeat 1 41 0 730 162 92 7 chr15 28657628 28657770 -72722751 + MER3 DNA MER1_type 15 168 -41 1883 136 71 8 chr15 28657773 28658141 -72722380 + MER3 DNA MER1_type 2234 2624 0 202 416 32 39 chr15 28659153 28659432 -72721089 + L3 LINE CR1 35 311 -1266 1115 216 25 72 chr15 28659456 28659775 -72720746 + L1MA10 LINE L1 6030 6333 -1 214 375 12 0 chr15 28659855 28659935 -72720586 + L3 LINE CR1 438 518 -1059 222 317 133 0 chr15 28659971 28660091 -72720430 + L2 LINE L2 3178 3313 0 904 301 95 6 chr15 28660167 28660516 -72720005 + L3 LINE CR1 618 997 -580 290 271 129 41 chr15 28660679 28660849 -72719672 + L3 LINE CR1 1291 1475 -102 186 352 23 11 chr15 28661703 28661791 -72718730 - MIR3 SINE MIR -31 177 89 225 0 0 0 chr15 28662218 28662243 -72718278 + (T)n Simple_repeat Simple_repeat 1 25 0 497 256 205 5 chr15 28662935 28663130 -72717391 - MIR SINE MIR -28 234 1 329 138 23 35 chr15 28663451 28663538 -72716983 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 182 223 107 116 chr15 28663764 28663876 -72716645 + L2 LINE L2 3145 3255 -17 449 266 8 31 chr15 28664794 28664922 -72715599 + L2 LINE L2 3189 3313 0 298 274 95 36 chr15 28664979 28665147 -72715374 - MIR SINE MIR -50 212 35 199 292 50 83 chr15 28665350 28665470 -72715051 - L2 LINE L2 -12 3260 3145 1911 132 3 34 chr15 28666085 28666238 -72714283 - AluSx SINE Alu -26 286 145 2419 72 7 3 chr15 28666238 28666544 -72713977 - AluY SINE Alu -4 307 1 1911 132 3 34 chr15 28666544 28666685 -72713836 - AluSx SINE Alu -167 145 1 344 331 63 7 chr15 28667222 28667364 -72713157 + MIR SINE MIR 71 220 -42 607 325 49 16 chr15 28668979 28669222 -72711299 + MIR SINE MIR 12 262 0 2184 194 28 41 chr15 28669598 28669716 -72710805 - L1ME2 LINE L1 -9 6155 6037 2468 58 0 0 chr15 28669716 28670008 -72710513 + AluY SINE Alu 1 292 -19 2184 194 28 41 chr15 28670008 28670398 -72710123 - L1ME2 LINE L1 -127 6037 5654 444 252 128 14 chr15 28670399 28670631 -72709890 - LTR16A1 LTR ERVL -193 257 1 1312 206 31 17 chr15 28670636 28670928 -72709593 - L1ME2 LINE L1 -1071 5075 4780 838 257 156 15 chr15 28671100 28671439 -72709082 - MLT1J2 LTR MaLR 0 450 64 628 226 27 54 chr15 28671513 28671699 -72708822 + MIR SINE MIR 5 185 -77 1767 142 45 24 chr15 28671726 28672015 -72708506 - AluJb SINE Alu -17 295 1 257 322 11 11 chr15 28672015 28672105 -72708416 + MIR SINE MIR 173 262 0 1858 180 0 3 chr15 28672615 28672910 -72707611 + AluJo SINE Alu 1 294 -18 2367 203 23 41 chr15 28673529 28673571 -72706950 - MLT2B3 LTR ERVL -7 547 506 222 37 0 0 chr15 28673571 28673598 -72706923 + (TG)n Simple_repeat Simple_repeat 2 28 0 204 40 0 0 chr15 28673597 28673622 -72706899 + (TC)n Simple_repeat Simple_repeat 2 26 0 2367 203 23 41 chr15 28673598 28673621 -72706900 - MLT2B3 LTR ERVL -48 506 484 189 0 0 0 chr15 28673621 28673642 -72706879 + (TA)n Simple_repeat Simple_repeat 2 22 0 2367 203 23 41 chr15 28673642 28674156 -72706365 - MLT2B3 LTR ERVL -70 484 1 205 233 105 58 chr15 28674910 28674996 -72705525 + L2 LINE L2 2583 2672 -642 377 325 63 0 chr15 28675139 28675265 -72705256 - MIR3 SINE MIR -10 198 65 * 394 238 162 0 chr15 28675264 28675369 -72705152 + L2 LINE L2 3188 3309 -4 2231 114 7 0 chr15 28676253 28676551 -72703970 - AluSx SINE Alu -8 304 5 225 283 0 0 chr15 28676584 28676644 -72703877 + L1MC/D LINE L1 5809 5868 -1940 1054 164 11 6 chr15 28677490 28677667 -72702854 - L1PA16 LINE L1 -16 6150 5973 2265 123 6 0 chr15 28677667 28677992 -72702529 + L1PA16 LINE L1 5614 5940 -226 23 0 0 0 chr15 28678364 28678387 -72702134 + AT_rich Low_complexity Low_complexity 1 23 0 198 60 120 0 chr15 28678387 28678437 -72702084 + (TTATA)n Simple_repeat Simple_repeat 2 57 0 46 0 0 0 chr15 28678437 28678483 -72702038 + AT_rich Low_complexity Low_complexity 1 46 0 1355 158 22 29 chr15 28678483 28678535 -72701986 - L1MA8 LINE L1 -23 6268 6217 189 0 0 0 chr15 28678535 28678556 -72701965 + (CA)n Simple_repeat Simple_repeat 1 21 0 1355 158 22 29 chr15 28678556 28678781 -72701740 - L1MA8 LINE L1 -74 6217 5993 1964 156 0 6 chr15 28679613 28679939 -72700582 - AluJo SINE Alu 0 324 1 193 71 0 0 chr15 28679939 28679954 -72700567 + (TTTTC)n Simple_repeat Simple_repeat 3 180 0 3965 153 31 15 chr15 28680487 28680777 -72699744 - L1MB2 LINE L1 -39 6132 5848 2538 70 0 6 chr15 28680777 28681089 -72699432 - AluY SINE Alu 0 311 2 3965 153 31 15 chr15 28681089 28681473 -72699048 - L1MB2 LINE L1 -323 5848 5447 992 259 162 56 chr15 28681478 28682244 -72698277 + HAL1 LINE L1 802 1648 -859 278 291 7 74 chr15 28682683 28682831 -72697690 + HAL1b LINE L1 750 887 -461 2748 32 48 0 chr15 28682855 28683170 -72697351 + L1PA4 LINE L1 5822 6151 -4 434 264 54 62 chr15 28683237 28683479 -72697042 + HAL1 LINE L1 2267 2506 -1 194 0 0 37 chr15 28684200 28684227 -72696294 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1910 229 60 36 chr15 28684484 28685033 -72695488 + MER68 LTR ERV1 1 562 0 2425 74 3 0 chr15 28685279 28685576 -72694945 + AluY SINE Alu 1 298 -13 611 332 131 13 chr15 28685750 28686139 -72694382 + L2 LINE L2 2859 3293 -20 1356 282 55 9 chr15 28686274 28686714 -72693807 - LTR16C LTR ERVL -29 462 3 602 314 67 9 chr15 28687775 28687998 -72692523 - MIR SINE MIR -6 256 21 381 184 9 64 chr15 28688856 28688985 -72691536 - MER5B DNA MER1_type -34 144 42 562 196 0 0 chr15 28689738 28689830 -72690691 + MER2 DNA MER2_type 8 99 -246 341 217 0 0 chr15 28689830 28689890 -72690631 - MER2 DNA MER2_type -1 344 285 230 154 26 0 chr15 28689882 28689921 -72690600 - MER8 DNA MER2_type -97 142 103 * 444 192 13 0 chr15 28690494 28690572 -72689949 + MADE1 DNA Mariner 2 80 0 348 311 0 0 chr15 28690587 28690690 -72689831 - Charlie8 DNA MER1_type -2127 290 188 1446 124 19 47 chr15 28691009 28691267 -72689254 - MER49 LTR ERV1 0 923 673 259 269 172 18 chr15 28691929 28692096 -72688425 - MIR SINE MIR -50 212 21 249 281 16 0 chr15 28692326 28692390 -72688131 - L2 LINE L2 -3 3269 3205 430 339 108 14 chr15 28692760 28693046 -72687475 - L2 LINE L2 -644 2670 2358 218 300 77 39 chr15 28694149 28694279 -72686242 - L2 LINE L2 -449 2865 2731 3893 166 41 26 chr15 28694425 28695155 -72685366 - L1MB4 LINE L1 -12 6168 5428 731 271 84 0 chr15 28695557 28695771 -72684750 + MIR SINE MIR 2 233 -29 647 190 124 0 chr15 28696266 28696387 -72684134 + FLAM_A SINE Alu 1 136 -6 2566 46 0 3 chr15 28697072 28697374 -72683147 - AluY SINE Alu -8 303 3 282 271 171 0 chr15 28698004 28698144 -72682377 - MIR SINE MIR -58 204 41 1601 204 33 46 chr15 28698156 28698524 -72681997 - MLT1A1 LTR MaLR -2 363 1 632 210 118 0 chr15 28698762 28698881 -72681640 + FLAM_A SINE Alu 1 133 0 4885 156 23 10 chr15 28701560 28702330 -72678191 - LTR39 LTR ERV1 0 783 4 299 267 98 0 chr15 28702485 28702587 -72677934 + L1ME LINE L1 5484 5594 -527 1503 180 0 11 chr15 28702915 28703176 -72677345 + AluJb SINE Alu 1 258 -54 225 94 0 0 chr15 28704022 28704054 -72676467 + (T)n Simple_repeat Simple_repeat 1 32 0 1108 139 42 0 chr15 28704060 28704103 -72676418 - AluSg SINE Alu -137 173 133 261 0 0 0 chr15 28704103 28704132 -72676389 + (TG)n Simple_repeat Simple_repeat 2 30 0 1108 139 42 0 chr15 28704132 28704254 -72676267 - AluSg SINE Alu -177 133 1 980 89 0 57 chr15 28706234 28706250 -72674271 - L1PA13 LINE L1 0 6163 6148 2417 72 0 10 chr15 28706250 28706554 -72673967 - AluY SINE Alu -10 301 1 980 89 0 57 chr15 28706554 28706694 -72673827 - L1PA13 LINE L1 -15 6148 6016 267 274 109 50 chr15 28706715 28707013 -72673508 - L1PA8A LINE L1 -241 5929 5608 1584 98 288 176 chr15 28707017 28707556 -72672965 - LTR12 LTR ERV1 -115 599 1 399 262 136 43 chr15 28707666 28707933 -72672588 - L1MC/D LINE L1 -747 5399 5158 2197 112 0 16 chr15 28707933 28708238 -72672283 - AluSg SINE Alu -10 300 1 399 262 136 43 chr15 28708238 28708495 -72672026 - L1MC/D LINE L1 -988 5158 4889 351 0 0 0 chr15 28708552 28708591 -72671930 + (TG)n Simple_repeat Simple_repeat 1 39 0 463 272 119 53 chr15 28708603 28708846 -72671675 - MLT1J LTR MaLR -22 489 231 1302 180 44 0 chr15 28709169 28709419 -72671102 - AluJo SINE Alu -14 298 38 1548 138 55 75 chr15 28709545 28709892 -72670629 - L1MA7 LINE L1 -85 6206 5867 523 205 59 96 chr15 28709952 28710191 -72670330 - L1MC/D LINE L1 -1440 4706 4477 321 280 127 21 chr15 28710521 28710710 -72669811 - L1MC/D LINE L1 -1744 4402 4194 420 319 27 16 chr15 28711077 28711265 -72669256 + MIR SINE MIR 69 258 -4 1862 171 3 0 chr15 28711440 28711727 -72668794 + AluJb SINE Alu 1 288 -24 1048 196 52 0 chr15 28711862 28712056 -72668465 + MER20 DNA MER1_type 1 204 -15 545 320 30 39 chr15 28712806 28713037 -72667484 - MIR SINE MIR -21 241 13 2088 128 3 3 chr15 28714411 28714709 -72665812 + AluSx SINE Alu 1 298 -14 1144 329 100 35 chr15 28715872 28716243 -72664278 - L2 LINE L2 -17 3296 2950 928 9 38 0 chr15 28716243 28716349 -72664172 + L1PA4 LINE L1 6046 6155 0 1144 329 100 35 chr15 28716349 28716901 -72663620 - L2 LINE L2 -363 2950 2305 450 0 0 0 chr15 28717099 28717149 -72663372 + (CA)n Simple_repeat Simple_repeat 2 51 0 2564 114 29 16 chr15 28717806 28718191 -72662330 - MLT1B LTR MaLR 0 390 1 758 184 149 6 chr15 28719059 28719233 -72661288 - MER3 DNA MER1_type -6 203 5 248 188 14 72 chr15 28719340 28719409 -72661112 - MIR SINE MIR -140 122 58 21 36 0 0 chr15 28719409 28719437 -72661084 + AT_rich Low_complexity Low_complexity 1 28 0 1043 269 121 33 chr15 28720475 28720961 -72659560 - MLT1F LTR MaLR -3 539 11 216 0 0 0 chr15 28721522 28721546 -72658975 + (A)n Simple_repeat Simple_repeat 1 24 0 370 324 170 16 chr15 28722477 28722659 -72657862 + MIR SINE MIR 47 256 -6 229 354 131 0 chr15 28723236 28723366 -72657155 - MIR SINE MIR -75 187 41 802 301 37 8 chr15 28724001 28724247 -72656274 - MIR SINE MIR -8 254 2 538 333 184 31 chr15 28725903 28727086 -72653435 - L2 LINE L2 -2 3270 1877 470 353 46 9 chr15 28727497 28727715 -72652806 - L3b LINE CR1 -160 1423 1198 3455 148 73 5 chr15 28728703 28729303 -72651218 + L1MA6 LINE L1 5660 6300 0 2132 122 114 150 chr15 28729473 28730007 -72650514 + MLT2B2 LTR ERVL 1 515 0 259 269 55 76 chr15 28730499 28730644 -72649877 + MER5B DNA MER1_type 35 176 -2 218 314 29 0 chr15 28732012 28732082 -72648439 + L2 LINE L2 3201 3272 0 262 279 100 57 chr15 28732099 28732239 -72648282 + MIR SINE MIR 80 225 -37 2706 33 0 0 chr15 28732375 28732678 -72647843 - AluY SINE Alu -8 303 1 275 344 43 31 chr15 28733207 28733370 -72647151 + L2 LINE L2 3043 3207 -65 1817 107 75 21 chr15 28734331 28734611 -72645910 + AluJb SINE Alu 1 295 -17 952 301 115 25 chr15 28735445 28735881 -72644640 - L2 LINE L2 -2 3311 2837 249 128 0 0 chr15 28735891 28735938 -72644583 + LTR66 LTR ERVL 393 439 -171 240 191 36 0 chr15 28735940 28736024 -72644497 + (TA)n Simple_repeat Simple_repeat 1 87 0 3363 166 32 44 chr15 28736057 28736950 -72643571 - L1MA9 LINE L1 -37 6283 5454 2092 255 77 71 chr15 28736980 28737814 -72642707 - L2 LINE L2 -507 2807 1969 196 268 18 71 chr15 28738020 28738132 -72642389 + MIR SINE MIR 83 188 -74 245 317 114 24 chr15 28738233 28738356 -72642165 - L2 LINE L2 -1 3312 3179 746 256 101 9 chr15 28739491 28739718 -72640803 + MIR SINE MIR 15 262 0 183 280 242 15 chr15 28739723 28739855 -72640666 + MIR SINE MIR 101 262 0 714 250 95 0 chr15 28740294 28740494 -72640027 + MIR SINE MIR 41 259 -3 284 193 0 5 chr15 28745624 28745678 -72634843 - MLT2C1 LTR ERVL 0 397 351 246 220 0 0 chr15 28745678 28745737 -72634784 + (TGGG)n Simple_repeat Simple_repeat 4 62 0 1722 210 26 6 chr15 28745738 28746091 -72634430 - MLT2C1 LTR ERVL -37 427 1 212 31 62 0 chr15 28746477 28746509 -72634012 + T-rich Low_complexity Low_complexity 2 35 0 254 296 136 30 chr15 28746515 28746647 -72633874 + MIR3 SINE MIR 1 146 -62 2202 124 67 6 chr15 28746748 28747063 -72633458 - MER1B DNA MER1_type 0 337 4 793 236 100 22 chr15 28747063 28747292 -72633229 + MIR SINE MIR 15 261 -1 233 288 85 8 chr15 28747301 28747419 -72633102 + MIR SINE MIR 91 217 -45 2648 51 0 0 chr15 28749030 28749341 -72631180 + AluY SINE Alu 1 311 0 203 306 109 48 chr15 28750939 28751086 -72629435 - MIR SINE MIR -10 252 97 820 244 65 30 chr15 28751619 28751849 -72628672 + MIR SINE MIR 4 241 -21 187 267 0 0 chr15 28751875 28751920 -72628601 + L2 LINE L2 3217 3261 -11 2413 261 74 51 chr15 28752105 28752915 -72627606 - L1MEc LINE L1 -3319 2896 2105 2256 102 0 13 chr15 28752915 28753218 -72627303 - AluSx SINE Alu -13 299 1 2413 261 74 51 chr15 28753218 28753838 -72626683 - L1MEc LINE L1 -4110 2105 1500 1973 127 3 0 chr15 28753838 28754155 -72626366 - AluSq SINE Alu 0 318 1 2413 261 74 51 chr15 28754155 28754914 -72625607 - L1MEc LINE L1 -4715 1500 707 393 301 8 15 chr15 28755426 28755559 -72624962 - L1MEc LINE L1 -5933 272 141 726 311 223 31 chr15 28756102 28757571 -72622950 - L2 LINE L2 -841 2473 724 1286 209 149 30 chr15 28757594 28757991 -72622530 - MLT1C LTR MaLR -9 458 15 1938 150 0 7 chr15 28758352 28758652 -72621869 + AluSx SINE Alu 1 298 -14 2061 99 7 7 chr15 28760010 28760315 -72620206 + AluSc SINE Alu 1 305 0 253 307 129 0 chr15 28760468 28760569 -72619952 + MIR SINE MIR 37 150 -58 4928 119 21 6 chr15 28760649 28761362 -72619159 - L1PA14 LINE L1 -2 6159 5436 227 339 55 28 chr15 28761873 28761982 -72618539 + L3b LINE CR1 1457 1568 -15 191 294 24 71 chr15 28762447 28762532 -72617989 - MER5A DNA MER1_type -102 87 7 663 240 0 0 chr15 28765240 28765361 -72615160 + FLAM_A SINE Alu 1 121 -12 246 105 0 0 chr15 28765361 28765399 -72615122 + (ATG)n Simple_repeat Simple_repeat 2 39 0 359 301 62 7 chr15 28766827 28766973 -72613548 + MIR SINE MIR 77 230 -32 193 133 89 0 chr15 28768116 28768161 -72612360 - L2 LINE L2 -2 3311 3263 385 352 26 16 chr15 28768818 28769011 -72611510 + L2 LINE L2 2468 2662 -652 5948 129 56 28 chr15 28769019 28770417 -72610104 - L1MA5 LINE L1 -5 6295 4850 196 248 0 48 chr15 28770611 28770756 -72609765 + CT-rich Low_complexity Low_complexity 2 139 0 560 328 55 30 chr15 28771032 28771267 -72609254 - MIR SINE MIR -11 251 11 208 337 81 23 chr15 28771527 28771613 -72608908 - L2 LINE L2 -48 3224 3134 1081 215 87 4 chr15 28774159 28774401 -72606120 + MIR SINE MIR 1 262 0 730 322 54 56 chr15 28775762 28776509 -72604012 + L2 LINE L2 2437 3182 -90 2381 75 0 3 chr15 28776936 28777230 -72603291 - AluY SINE Alu -18 293 1 357 206 134 21 chr15 28779213 28779310 -72601211 + MIR SINE MIR 85 192 -70 30 59 0 0 chr15 28779629 28779680 -72600841 + AT_rich Low_complexity Low_complexity 1 51 0 2295 71 0 4 chr15 28779806 28780107 -72600414 + AluY SINE Alu 1 300 0 190 318 112 9 chr15 28781596 28781703 -72598818 + MIR3 SINE MIR 69 186 -22 26 0 0 0 chr15 28781960 28781986 -72598535 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr15 28782085 28782108 -72598413 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr15 28782706 28782728 -72597793 + (A)n Simple_repeat Simple_repeat 1 22 0 2714 23 0 7 chr15 28783147 28783454 -72597067 - AluY SINE Alu -6 305 1 2458 58 0 10 chr15 28786096 28786391 -72594130 + AluY SINE Alu 1 292 -19 298 212 47 12 chr15 28786411 28786496 -72594025 - L1MA4 LINE L1 -5 6295 6208 1920 143 27 0 chr15 28787718 28788012 -72592509 - AluSx SINE Alu -10 302 1 2115 135 0 10 chr15 28788359 28788670 -72591851 - AluSg SINE Alu -2 308 1 309 284 61 20 chr15 28789001 28789149 -72591372 - L1MC4 LINE L1 -1124 6918 6765 281 257 115 158 chr15 28790899 28791082 -72589439 + MER5B DNA MER1_type 3 177 -1 2051 125 0 30 chr15 28793349 28793654 -72586867 + AluSx SINE Alu 1 296 -16 3673 89 105 0 chr15 28794402 28794928 -72585593 + LTR12 LTR ERV1 1 581 -133 251 316 90 57 chr15 28795660 28795992 -72584529 - L1ME LINE L1 -224 5897 5555 274 293 92 18 chr15 28796063 28796227 -72584294 - L1ME LINE L1 -2337 5471 5296 24 32 0 0 chr15 28796448 28796479 -72584042 + AT_rich Low_complexity Low_complexity 1 31 0 286 256 64 39 chr15 28796772 28796975 -72583546 - L1ME LINE L1 -1481 4665 4458 261 309 81 22 chr15 28797930 28798066 -72582455 + MIR SINE MIR 20 163 -99 987 284 179 20 chr15 28798072 28798512 -72582009 - L2 LINE L2 0 3313 2804 566 231 46 67 chr15 28798523 28798649 -72581872 + MER58C DNA MER1_type 10 137 -2283 189 0 0 0 chr15 28798649 28798670 -72581851 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 2069 119 3 23 chr15 28798676 28798979 -72581542 + AluSx SINE Alu 1 297 -15 566 231 46 67 chr15 28798979 28799040 -72581481 + MER58C DNA MER1_type 142 200 -15 1043 244 64 33 chr15 28799050 28799411 -72581110 - L2 LINE L2 -504 2810 2439 293 276 181 0 chr15 28799972 28800077 -72580444 + MIR SINE MIR 1 124 -138 303 271 37 56 chr15 28802264 28802371 -72578150 + L2 LINE L2 3160 3264 -8 52 17 0 0 chr15 28802679 28802738 -72577783 + AT_rich Low_complexity Low_complexity 1 59 0 24 0 0 0 chr15 28803010 28803034 -72577487 + AT_rich Low_complexity Low_complexity 1 24 0 457 332 128 8 chr15 28803827 28804210 -72576311 - L1ME4a LINE L1 -125 5996 5568 1752 172 0 7 chr15 28804210 28804500 -72576021 + AluJo SINE Alu 1 288 -24 325 301 53 38 chr15 28805057 28805190 -72575331 + L3 LINE CR1 937 1071 -506 265 271 123 12 chr15 28805190 28805360 -72575161 + MER113 DNA MER1_type? 2 190 -331 303 259 168 76 chr15 28805395 28805496 -72575025 + MER113 DNA MER1_type? 307 397 -124 2182 109 0 0 chr15 28805496 28805790 -72574731 + AluSq SINE Alu 1 294 -19 303 259 168 76 chr15 28805790 28805885 -72574636 + MER113 DNA MER1_type? 397 521 0 21 0 0 0 chr15 28805886 28805907 -72574614 + AT_rich Low_complexity Low_complexity 1 21 0 489 369 47 4 chr15 28806009 28806288 -72574233 + L3 LINE CR1 1241 1531 -46 326 254 23 77 chr15 28806288 28806418 -72574103 - LTR67 LTR ERVL -1 556 434 1992 259 160 62 chr15 28808088 28809351 -72571170 - HAL1 LINE L1 -1 2506 1368 249 33 0 0 chr15 28809351 28809381 -72571140 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 1992 259 160 62 chr15 28809381 28810301 -72570220 - HAL1 LINE L1 -1139 1368 77 2396 173 20 34 chr15 28810959 28811398 -72569123 - Tigger2a DNA MER2_type -1 433 1 185 333 0 16 chr15 28817317 28817380 -72563141 + MIR SINE MIR 49 110 -152 207 237 51 0 chr15 28817592 28817651 -72562870 + MIR SINE MIR 54 115 -93 392 242 200 32 chr15 28817984 28818174 -72562347 - MIR SINE MIR -38 224 3 1998 201 14 14 chr15 28818539 28818953 -72561568 + L1MD3 LINE L1 7582 7995 0 236 242 68 45 chr15 28820986 28821118 -72559403 + L2 LINE L2 3097 3231 -82 2503 59 0 7 chr15 28825673 28825977 -72554544 - AluY SINE Alu -9 302 1 192 182 0 0 chr15 28826940 28826973 -72553548 + MIR SINE MIR 46 78 -184 271 290 40 10 chr15 28827066 28827166 -72553355 + MIR SINE MIR 122 224 -38 385 312 153 0 chr15 28828477 28828634 -72551887 + MIR SINE MIR 29 209 -53 2239 119 0 0 chr15 28828761 28829064 -72551457 - AluSc SINE Alu -6 303 1 4465 34 0 2 chr15 28829481 28829984 -72550537 - L1PA5 LINE L1 -3 6151 5650 601 43 0 0 chr15 28829985 28830055 -72550466 + L1PA5 LINE L1 5565 5634 -520 2185 199 52 36 chr15 28830119 28830616 -72549905 - MER74A LTR ERVL -2 556 52 388 198 55 11 chr15 28830743 28830834 -72549687 + MER88 LTR ERVL 79 173 -291 * 1416 273 83 30 chr15 28830755 28831227 -72549294 - MER74B LTR ERVL -74 548 52 634 237 142 5 chr15 28832759 28832978 -72547543 + MIR SINE MIR 3 251 -11 1373 160 3 85 chr15 28833016 28833309 -72547212 + AluJb SINE Alu 42 310 -2 684 265 114 5 chr15 28837297 28837516 -72543005 - MIR SINE MIR -2 260 18 913 247 11 0 chr15 28839073 28839247 -72541274 + MER5A DNA MER1_type 5 180 -9 752 272 12 6 chr15 28839262 28839431 -72541090 + MER5B DNA MER1_type 8 177 -1 886 173 31 97 chr15 28839445 28839734 -72540787 + L1MB7 LINE L1 5915 6184 0 331 141 70 0 chr15 28839771 28839842 -72540679 - L1MB7 LINE L1 0 6184 6109 1216 221 0 9 chr15 28839881 28840112 -72540409 - AluJb SINE Alu -83 229 1 1239 194 108 60 chr15 28840112 28840402 -72540119 - L1MB8 LINE L1 -63 6115 5790 219 69 0 0 chr15 28840402 28840431 -72540090 + (TG)n Simple_repeat Simple_repeat 2 30 0 1239 194 108 60 chr15 28840431 28840640 -72539881 - L1MB8 LINE L1 -388 5790 5592 1762 143 124 0 chr15 28840645 28841016 -72539505 - L1MB4 LINE L1 -1 6990 6574 5203 218 40 26 chr15 28841022 28842767 -72537754 - L1MB4 LINE L1 -562 6415 4656 1318 257 54 37 chr15 28842770 28843741 -72536780 - L1MB4 LINE L1 -3585 3372 2431 328 287 160 40 chr15 28843747 28843897 -72536624 - L1MB4 LINE L1 -5737 1118 951 264 257 49 121 chr15 28843919 28844040 -72536481 - L1MB4 LINE L1 -6595 264 136 288 0 0 0 chr15 28844040 28844072 -72536449 + (CA)n Simple_repeat Simple_repeat 2 33 0 2280 112 3 0 chr15 28844074 28844379 -72536142 + AluSp SINE Alu 1 306 -7 264 257 49 121 chr15 28844379 28844519 -72536002 - L1MB4 LINE L1 -6724 135 19 280 331 62 28 chr15 28845392 28845570 -72534951 - MIR3 SINE MIR -13 195 12 327 270 150 0 chr15 28845860 28845960 -72534561 - L2 LINE L2 -6 3266 3152 18377 129 14 4 chr15 28846183 28850160 -72530361 + L1PA10 LINE L1 2160 6168 0 23 54 0 0 chr15 28850877 28850914 -72529607 + AT_rich Low_complexity Low_complexity 1 37 0 324 250 0 40 chr15 28851812 28851888 -72528633 - MER5B DNA MER1_type -2 176 104 189 253 74 84 chr15 28851894 28851989 -72528532 + MER5B DNA MER1_type 29 122 -56 183 336 43 17 chr15 28853231 28853347 -72527174 + MIR3 SINE MIR 75 193 -15 593 264 137 13 chr15 28853901 28854128 -72526393 - MIR SINE MIR 0 262 8 775 236 62 0 chr15 28854435 28854613 -72525908 - MER5A DNA MER1_type 0 189 1 405 327 89 6 chr15 28854813 28854981 -72525540 + L2 LINE L2 3132 3313 0 1749 161 36 30 chr15 28855013 28855146 -72525375 + AluJo SINE Alu 1 132 -180 2396 100 0 3 chr15 28855146 28855456 -72525065 + AluSq SINE Alu 2 310 -3 1749 161 36 30 chr15 28855456 28855626 -72524895 + AluJo SINE Alu 132 306 -6 236 156 18 193 chr15 28858037 28858146 -72522375 + MIR3 SINE MIR 116 205 -3 268 288 0 25 chr15 28858874 28858954 -72521567 - MIR SINE MIR -99 163 86 510 314 38 51 chr15 28859456 28859692 -72520829 - MIR SINE MIR 0 262 30 4953 153 18 17 chr15 28859836 28861269 -72519252 - L1PB4 LINE L1 0 6156 4722 2451 120 58 23 chr15 28861269 28861702 -72518819 - LTR7 LTR ERV1 0 450 3 4953 153 18 17 chr15 28861702 28862050 -72518471 - L1PB4 LINE L1 -1434 4722 4376 438 299 114 78 chr15 28862562 28862833 -72517688 + L2 LINE L2 2992 3272 0 288 242 24 65 chr15 28863485 28863609 -72516912 - MLT1J2 LTR MaLR -3 447 329 265 207 0 198 chr15 28863695 28863811 -72516710 - MER5A DNA MER1_type -84 105 13 398 246 90 8 chr15 28863905 28864027 -72516494 - MLT1J2 LTR MaLR -315 135 4 1546 130 159 88 chr15 28864153 28864530 -72515991 - MER4A LTR ERV1 0 664 261 429 156 89 0 chr15 28864530 28864620 -72515901 - MER4A LTR ERV1 -566 98 1 14750 99 52 29 chr15 28864629 28867242 -72513279 - MER4A-int LTR ERV1 0 6598 3924 2436 112 87 26 chr15 28867260 28867788 -72512733 - MER4A-int LTR ERV1 -3302 3296 2737 310 214 0 14 chr15 28867788 28867858 -72512663 + LTR8 LTR ERV1 1 69 -622 1234 77 68 197 chr15 28867898 28868091 -72512430 - L1MA5A LINE L1 -2 6295 6093 400 108 31 0 chr15 28868091 28868156 -72512365 + MADE1 DNA Mariner 1 67 -13 1234 77 68 197 chr15 28868156 28868249 -72512272 - L1MA5A LINE L1 -204 6093 5990 890 161 92 0 chr15 28868249 28868423 -72512098 + LTR8 LTR ERV1 68 257 -434 3613 81 30 95 chr15 28868423 28868704 -72511817 - MER4A-int LTR ERV1 -4103 2495 2197 2185 77 17 30 chr15 28868704 28869002 -72511519 + AluSg SINE Alu 1 294 -16 3613 81 30 95 chr15 28869002 28869496 -72511025 - MER4A-int LTR ERV1 -4401 2197 1771 1145 86 74 149 chr15 28869494 28869810 -72510711 - MER4A-int LTR ERV1 -4266 1284 503 * 351 219 16 31 chr15 28869797 28869925 -72510596 - MER4A-int LTR ERV1 -5997 601 476 * 2555 81 70 42 chr15 28870082 28870309 -72510212 - MER4A-int LTR ERV1 -6156 442 223 2279 78 0 7 chr15 28870309 28870603 -72509918 + AluY SINE Alu 1 292 -19 2555 81 70 42 chr15 28870603 28870805 -72509716 - MER4A-int LTR ERV1 -6375 223 1 1495 144 25 76 chr15 28870808 28871170 -72509351 - MER4A LTR ERV1 0 664 263 492 122 89 0 chr15 28871170 28871260 -72509261 - MER4A LTR ERV1 -566 98 1 184 379 0 0 chr15 28872606 28872672 -72507849 - MIR SINE MIR -190 72 7 1164 71 137 11 chr15 28873383 28873566 -72506955 - MER4A-int LTR ERV1 -6392 206 1 1496 144 25 76 chr15 28873569 28873931 -72506590 - MER4A LTR ERV1 0 664 263 492 122 89 0 chr15 28873931 28874021 -72506500 - MER4A LTR ERV1 -566 98 1 202 298 18 0 chr15 28876375 28876432 -72504089 + L2 LINE L2 2724 2781 -533 289 178 297 10 chr15 28876820 28876921 -72503600 - MER5A DNA MER1_type -5 184 55 683 222 143 25 chr15 28877056 28877335 -72503186 - MLT1D LTR MaLR -193 312 1 214 391 0 0 chr15 28877335 28877427 -72503094 + L2 LINE L2 2575 2666 -648 206 143 0 71 chr15 28877536 28877578 -72502943 - L2 LINE L2 -11 3302 3264 * 787 262 17 42 chr15 28877551 28877788 -72502733 - MIR SINE MIR -17 245 15 494 340 72 8 chr15 28877864 28878099 -72502422 + MIR SINE MIR 5 254 -8 927 107 0 8 chr15 28878195 28878326 -72502195 - AluY SINE Alu -25 286 157 905 249 70 0 chr15 28880236 28880477 -72500044 - MIR SINE MIR -3 259 2 323 281 169 17 chr15 28880539 28880717 -72499804 - MIR SINE MIR -52 210 6 672 149 0 0 chr15 28881702 28881809 -72498712 + AluJb SINE Alu 1 107 -205 1820 147 11 0 chr15 28881810 28882076 -72498445 + AluSx SINE Alu 22 290 -22 296 273 55 27 chr15 28883362 28883472 -72497049 + MIR SINE MIR 52 164 -98 2321 119 3 0 chr15 28886013 28886324 -72494197 - AluSx SINE Alu 0 312 1 1464 176 35 4 chr15 28888820 28889075 -72491446 - AluJo SINE Alu 0 312 50 323 273 95 11 chr15 28889783 28889941 -72490580 - MIR SINE MIR -62 146 11 257 338 78 0 chr15 28892036 28892178 -72488343 + L2 LINE L2 3117 3269 -3 2115 147 35 0 chr15 28892310 28892658 -72487863 - MER46B DNA MER2_type -1 235 1 1952 159 0 0 chr15 28893008 28893297 -72487224 - AluSx SINE Alu -9 303 15 2404 79 7 0 chr15 28893707 28894010 -72486511 - AluSp SINE Alu -8 305 1 534 271 132 16 chr15 28894980 28895283 -72485238 - L1ME4a LINE L1 -9 6112 5775 921 228 47 67 chr15 28895402 28895744 -72484777 + MER46C DNA MER2_type 4 338 0 2381 69 7 0 chr15 28898008 28898297 -72482224 + AluY SINE Alu 1 291 -20 22 0 0 0 chr15 28898561 28898583 -72481938 + AT_rich Low_complexity Low_complexity 1 22 0 509 285 225 26 chr15 28902232 28902832 -72477689 + L2 LINE L2 2574 3308 -5 1827 128 207 11 chr15 28905173 28905531 -72474990 - MSTA LTR MaLR 0 428 1 416 226 185 46 chr15 28905674 28905936 -72474585 - MER34 LTR ERV1 0 739 333 292 214 88 34 chr15 28906039 28906171 -72474350 - MER34C LTR ERV1 -415 128 1 6199 111 90 7 chr15 28906363 28907286 -72473235 + THE1-int LTR MaLR 121 1120 -460 539 268 81 51 chr15 28907286 28907521 -72473000 - Charlie8 DNA MER1_type -2175 242 1 226 318 56 56 chr15 28907541 28907667 -72472854 - L2 LINE L2 -176 3096 2971 239 342 154 23 chr15 28907902 28908344 -72472177 - L2 LINE L2 -590 2724 2225 1064 227 18 0 chr15 28910391 28910611 -72469910 + MER58A DNA MER1_type 1 224 0 2283 107 3 7 chr15 28913549 28913857 -72466664 - AluSx SINE Alu -5 307 1 536 306 40 0 chr15 28914717 28914890 -72465631 + MIR SINE MIR 13 192 -70 211 294 11 54 chr15 28916780 28916872 -72463649 + MIR3 SINE MIR 105 192 -16 1859 23 0 0 chr15 28917309 28917523 -72462998 - L1PA4 LINE L1 -1 6154 5941 541 192 0 31 chr15 28918125 28918255 -72462266 - L1MA9 LINE L1 -30 6282 6157 1012 144 0 0 chr15 28919245 28919391 -72461130 + FRAM SINE Alu 1 146 -30 29 0 0 0 chr15 28919398 28919427 -72461094 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr15 28922368 28922389 -72458132 + (A)n Simple_repeat Simple_repeat 1 21 0 316 293 0 12 chr15 28922606 28922688 -72457833 - MIR SINE MIR -144 118 38 2439 83 0 0 chr15 28924476 28924777 -72455744 + AluSc SINE Alu 1 301 -8 605 246 163 5 chr15 28924779 28924982 -72455539 + MIR SINE MIR 23 257 -5 1088 198 12 63 chr15 28924982 28925234 -72455287 + MER8 DNA MER2_type 1 239 0 230 321 80 9 chr15 28925845 28925957 -72454564 - MIR3 SINE MIR -7 201 82 180 250 48 36 chr15 28927492 28927576 -72452945 - L2 LINE L2 0 3313 3229 2240 95 3 7 chr15 28927718 28928012 -72452509 + AluSc SINE Alu 1 293 -16 385 248 87 27 chr15 28928147 28928296 -72452225 - MER103 DNA DNA -6 160 3 1732 183 17 7 chr15 28928560 28928855 -72451666 + AluJb SINE Alu 1 298 -14 217 204 0 0 chr15 28929021 28929065 -72451456 - L2 LINE L2 -553 2761 2718 26 0 0 0 chr15 28929748 28929774 -72450747 + AT_rich Low_complexity Low_complexity 1 26 0 333 298 35 0 chr15 28930660 28930774 -72449747 + L2 LINE L2 3184 3301 -12 1708 180 153 54 chr15 28930817 28931333 -72449188 - MLT1E2 LTR MaLR -8 618 52 1635 259 64 23 chr15 28932351 28932837 -72447684 - MLT1E LTR MaLR 0 593 88 188 204 74 0 chr15 28934537 28934591 -72445930 + L2 LINE L2 2905 2962 -351 373 277 84 25 chr15 28934742 28934944 -72445577 + MIR SINE MIR 46 259 -3 1397 119 0 89 chr15 28935409 28935645 -72444876 - MER1B DNA MER1_type 0 339 125 197 241 48 24 chr15 28936953 28937036 -72443485 + MIR SINE MIR 178 262 0 203 189 0 0 chr15 28938479 28938516 -72442005 + (TA)n Simple_repeat Simple_repeat 2 38 0 277 104 0 0 chr15 28938516 28938564 -72441957 + LTR66 LTR ERVL 394 441 -169 276 350 8 0 chr15 28938574 28938691 -72441830 + MIR SINE MIR 134 251 -11 364 307 123 0 chr15 28939156 28939335 -72441186 + MIR SINE MIR 49 249 -13 766 188 34 74 chr15 28939870 28939946 -72440575 - MER5A DNA MER1_type 0 189 112 1892 161 0 3 chr15 28939946 28940237 -72440284 - AluSg SINE Alu -20 290 1 766 188 34 74 chr15 28940237 28940336 -72440185 - MER5A DNA MER1_type -77 112 21 1824 204 70 31 chr15 28941221 28941710 -72438811 + Charlie4a DNA MER1_type 1 508 0 2204 118 0 3 chr15 28941715 28942012 -72438509 + AluSg SINE Alu 1 296 -14 1391 50 0 96 chr15 28942050 28942278 -72438243 + AluY SINE Alu 101 309 0 507 323 71 28 chr15 28942397 28942892 -72437629 + L1ME4a LINE L1 5305 5820 -301 413 179 163 0 chr15 28943003 28943126 -72437395 + L1ME4a LINE L1 5976 6118 -3 320 123 14 0 chr15 28944079 28944152 -72436369 + (TG)n Simple_repeat Simple_repeat 2 75 0 180 111 0 0 chr15 28944675 28944702 -72435819 + (GGA)n Simple_repeat Simple_repeat 1 27 0 283 260 104 0 chr15 28945642 28945738 -72434783 - MIR SINE MIR -108 154 49 289 342 43 35 chr15 28945891 28946122 -72434399 - MIR SINE MIR -10 252 20 2067 130 135 23 chr15 28947126 28947511 -72433010 + MSTA LTR MaLR 1 428 0 302 191 191 9 chr15 28948539 28948644 -72431877 - MIR SINE MIR -62 146 23 197 349 0 0 chr15 28948690 28948753 -72431768 - MIR SINE MIR -108 154 92 477 262 8 16 chr15 28948953 28949079 -72431442 + MIR SINE MIR 39 163 -99 812 139 151 23 chr15 28950208 28950380 -72430141 - MLT1D LTR MaLR -4 501 308 532 146 48 68 chr15 28950380 28950483 -72430038 - MLT1D LTR MaLR -403 102 2 2528 64 0 0 chr15 28951935 28952232 -72428289 - AluY SINE Alu -14 297 1 5750 148 32 28 chr15 28952455 28953472 -72427049 + L1PA6 LINE L1 11 1032 -5114 * 29198 64 12 19 chr15 28953466 28957230 -72423291 + L1PA6 LINE L1 1565 5293 -861 2551 53 3 3 chr15 28957230 28957530 -72422991 + AluY SINE Alu 1 300 -11 29198 64 12 19 chr15 28957530 28958384 -72422137 + L1PA6 LINE L1 5293 6151 -3 252 204 0 0 chr15 28958421 28958475 -72422046 - MER4-int LTR ERV1 -5433 1165 1112 5379 189 105 14 chr15 28959718 28961039 -72419482 - Charlie1a DNA MER1_type -2 1453 12 2427 64 7 0 chr15 28963252 28963550 -72416971 - AluY SINE Alu -11 300 1 1549 179 7 37 chr15 28964799 28965095 -72415426 - AluJo SINE Alu -19 293 7 202 373 9 18 chr15 28965991 28966101 -72414420 - MIR3 SINE MIR -11 197 89 198 0 0 0 chr15 28968221 28968243 -72412278 + (TCTG)n Simple_repeat Simple_repeat 1 22 0 660 119 34 17 chr15 28968243 28968419 -72412102 + CT-rich Low_complexity Low_complexity 2 180 0 417 332 81 9 chr15 28971013 28971224 -72409297 - MIR SINE MIR -32 230 5 382 306 202 31 chr15 28971251 28971895 -72408626 - L2 LINE L2 -559 2755 2002 185 244 0 0 chr15 28972198 28972243 -72408278 - L2 LINE L2 -4 3309 3265 1816 158 68 50 chr15 28972309 28972690 -72407831 - MLT1B LTR MaLR -2 388 1 2203 103 0 39 chr15 28973004 28973315 -72407206 + AluSx SINE Alu 11 309 -3 222 171 0 0 chr15 28974062 28974103 -72406418 + (CA)n Simple_repeat Simple_repeat 2 42 0 330 26 0 0 chr15 28974103 28974142 -72406379 + (TC)n Simple_repeat Simple_repeat 1 39 0 288 146 0 0 chr15 28974382 28974430 -72406091 - L2 LINE L2 -4 3309 3262 21 0 0 0 chr15 28975141 28975162 -72405359 + AT_rich Low_complexity Low_complexity 1 21 0 2270 155 16 25 chr15 28975218 28975897 -72404624 - L1MB3 LINE L1 -4 6179 5450 183 80 0 0 chr15 28976430 28976455 -72404066 + (TGGA)n Simple_repeat Simple_repeat 1 25 0 1826 162 223 39 chr15 28977682 28978145 -72402376 - LTR10A LTR ERV1 -61 548 1 265 359 0 76 chr15 28978175 28978373 -72402148 - L2 LINE L2 -91 3181 2999 1630 184 114 11 chr15 28978453 28978812 -72401709 + MSTD LTR MaLR 1 396 0 1485 151 0 37 chr15 28979099 28979344 -72401177 - MSTB LTR MaLR 0 426 191 1080 131 0 0 chr15 28979346 28979499 -72401022 - AluJb SINE Alu -8 304 152 6293 167 40 23 chr15 28979499 28980242 -72400279 - MSTA-int LTR MaLR -502 1149 379 2617 68 0 0 chr15 28980242 28980549 -72399972 - AluY SINE Alu -4 307 1 6293 167 40 23 chr15 28980549 28980935 -72399586 - MSTA-int LTR MaLR -1272 379 1 2301 170 70 0 chr15 28980936 28981335 -72399186 - MSTA LTR MaLR -1 427 1 578 269 39 14 chr15 28981747 28981945 -72398576 + MIR SINE MIR 18 219 -43 210 160 69 30 chr15 28982197 28982328 -72398193 + (ATGGTG)n Simple_repeat Simple_repeat 1 136 0 221 180 15 45 chr15 28982402 28982540 -72397981 + (ATGGTG)n Simple_repeat Simple_repeat 1 133 0 864 240 47 35 chr15 28982542 28982645 -72397876 - MIR SINE MIR -1 261 161 2369 123 19 25 chr15 28982645 28983010 -72397511 - MLT1A1 LTR MaLR -2 363 1 864 240 47 35 chr15 28983010 28983164 -72397357 - MIR SINE MIR -101 161 1 1440 174 15 120 chr15 28984564 28984905 -72395616 - MLT1A1 LTR MaLR 0 365 72 2090 154 95 3 chr15 28984905 28985295 -72395226 + MSTB LTR MaLR 1 426 0 1440 174 15 120 chr15 28985295 28985361 -72395160 - MLT1A1 LTR MaLR -293 72 1 1122 314 24 22 chr15 28986169 28986627 -72393894 + L2 LINE L2 2195 2653 -661 343 343 7 29 chr15 28987351 28987491 -72393030 - L2 LINE L2 0 3272 3136 21 0 0 0 chr15 28988542 28988563 -72391958 + AT_rich Low_complexity Low_complexity 1 21 0 1939 136 0 40 chr15 28989592 28989893 -72390628 + AluJb SINE Alu 5 293 -19 2444 220 69 6 chr15 28989964 28990483 -72390038 + MLT1F1 LTR MaLR 8 559 -8 631 108 10 39 chr15 28991498 28991600 -72388921 + HY3 scRNA scRNA 1 99 -2 207 0 0 0 chr15 28992360 28992383 -72388138 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 306 280 160 40 chr15 28992608 28992758 -72387763 - MIR3 SINE MIR -19 189 22 450 53 0 0 chr15 28994159 28994216 -72386305 + (CA)n Simple_repeat Simple_repeat 2 58 0 2363 72 0 56 chr15 28994682 28995002 -72385519 + AluY SINE Alu 1 302 -9 1160 189 62 8 chr15 28995697 28995941 -72384580 + MER63 DNA MER1_type 641 897 -163 2053 228 86 4 chr15 28996976 28997512 -72383009 + MER63 DNA MER1_type 481 1060 0 1349 163 40 0 chr15 28997514 28997741 -72382780 - MER46A DNA MER2_type 0 236 1 753 178 51 51 chr15 28998283 28998440 -72382081 - MER20 DNA MER1_type -55 164 8 23 86 0 0 chr15 28999075 28999133 -72381388 + AT_rich Low_complexity Low_complexity 1 58 0 23 33 0 0 chr15 28999183 28999213 -72381308 + AT_rich Low_complexity Low_complexity 1 30 0 2473 59 0 23 chr15 29001106 29001409 -72379112 + AluY SINE Alu 1 296 -15 591 274 22 28 chr15 29001662 29001841 -72378680 + MER5B DNA MER1_type 1 178 0 5692 127 24 3 chr15 29002041 29002925 -72377596 + L1MC1 LINE L1 5432 6333 0 2298 112 0 3 chr15 29003685 29003997 -72376524 - AluSx SINE Alu -1 311 1 2151 119 0 49 chr15 29005737 29006065 -72374456 - AluSx SINE Alu 0 312 1 794 234 0 18 chr15 29006095 29006266 -72374255 - AluJb SINE Alu -8 304 137 366 314 58 5 chr15 29007656 29007844 -72372677 - MIR SINE MIR 0 262 65 2349 77 0 3 chr15 29010605 29010920 -72369601 - AluY SINE Alu 0 314 1 855 280 0 4 chr15 29012328 29012553 -72367968 - MER58A DNA MER1_type 0 224 1 373 288 70 101 chr15 29012729 29013045 -72367476 + L2 LINE L2 2577 2882 -432 216 186 43 161 chr15 29013248 29013409 -72367112 + L2 LINE L2 3078 3219 -94 519 288 85 54 chr15 29013579 29014085 -72366436 - L2 LINE L2 -195 3077 2560 192 40 0 0 chr15 29014088 29014113 -72366408 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 237 313 210 9 chr15 29014242 29014475 -72366046 - L2 LINE L2 -976 2338 2059 255 274 0 60 chr15 29014511 29014595 -72365926 + L2 LINE L2 3188 3266 -6 1931 160 0 7 chr15 29015020 29015308 -72365213 - AluSx SINE Alu -26 286 1 21 0 0 0 chr15 29015393 29015414 -72365107 + AT_rich Low_complexity Low_complexity 1 21 0 267 111 0 0 chr15 29015572 29015617 -72364904 - AluSp/q SINE Alu -1 302 258 2147 134 0 3 chr15 29015617 29015922 -72364599 - AluSx SINE Alu -8 304 1 1986 166 33 0 chr15 29016986 29017317 -72363204 + MER2 DNA MER2_type 2 343 -1 11142 76 4 24 chr15 29018926 29021267 -72359254 - L1PA7 LINE L1 -3 6151 3851 1678 99 5 5 chr15 29022132 29022353 -72358168 + AluSg/x SINE Alu 70 290 -19 758 251 138 10 chr15 29022353 29022793 -72357728 + L2 LINE L2 2534 3074 -239 205 219 0 0 chr15 29022794 29022835 -72357686 + L2 LINE L2 2503 2543 -771 536 241 62 0 chr15 29024247 29024409 -72356112 + L1ME LINE L1 5177 5348 -798 796 161 0 29 chr15 29024466 29024603 -72355918 - FLAM_C SINE Alu 0 133 1 1169 229 172 3 chr15 29024625 29024979 -72355542 + L1ME LINE L1 5386 5799 -371 2410 76 0 3 chr15 29025410 29025714 -72354807 - AluY SINE Alu -8 303 1 2282 112 0 0 chr15 29026983 29027278 -72353243 - AluSx SINE Alu -17 295 1 665 105 0 129 chr15 29027499 29027623 -72352898 + FRAM SINE Alu 57 164 -12 430 268 21 21 chr15 29028265 29028407 -72352114 - MLT1J LTR MaLR -369 142 1 31913 105 16 59 chr15 29029187 29034958 -72345563 + L1PA7 LINE L1 1 5453 -701 2240 111 0 7 chr15 29034958 29035264 -72345257 + AluSg SINE Alu 1 304 -6 31913 105 16 59 chr15 29035264 29035937 -72344584 + L1PA7 LINE L1 5453 6154 0 2291 114 3 0 chr15 29036099 29036398 -72344123 + AluSg SINE Alu 1 300 -10 2523 84 0 0 chr15 29036698 29037008 -72343513 + AluSx SINE Alu 1 310 -2 215 300 0 0 chr15 29037240 29037310 -72343211 - MIR SINE MIR -108 154 85 2245 121 0 6 chr15 29037346 29037660 -72342861 + AluSx SINE Alu 1 312 0 180 310 11 46 chr15 29038523 29038610 -72341911 - MIR SINE MIR -123 139 56 2025 124 18 0 chr15 29041019 29041302 -72339219 + AluJb SINE Alu 1 288 -24 386 185 0 0 chr15 29041421 29041486 -72339035 + FLAM_A SINE Alu 69 133 0 232 27 54 0 chr15 29041706 29041743 -72338778 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1547 167 65 4 chr15 29041817 29042093 -72338428 + AluJb SINE Alu 1 293 -19 229 286 143 29 chr15 29042125 29042265 -72338256 + L3 LINE CR1 341 496 -1081 2315 89 0 0 chr15 29042601 29042892 -72337629 + AluSc SINE Alu 1 291 -18 222 37 0 0 chr15 29043641 29043668 -72336853 + (GAA)n Simple_repeat Simple_repeat 2 28 0 604 234 8 0 chr15 29047172 29047296 -72333225 + FRAM SINE Alu 34 158 -18 2252 95 0 0 chr15 29047984 29048294 -72332227 + AluSx SINE Alu 1 310 0 329 173 0 0 chr15 29049311 29049392 -72331129 - AluS SINE Alu 0 310 230 2346 63 0 30 chr15 29049817 29050119 -72330402 + AluY SINE Alu 1 293 -18 193 333 27 41 chr15 29050548 29050695 -72329826 + MIR3 SINE MIR 36 180 -28 1114 192 28 0 chr15 29050986 29051200 -72329321 + MER58A DNA MER1_type 4 223 -1 906 226 27 21 chr15 29053209 29053395 -72327126 - MER5A DNA MER1_type -2 187 1 200 29 0 59 chr15 29057617 29057651 -72322870 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 844 256 135 27 chr15 29058869 29059501 -72321020 - L2 LINE L2 -4 3309 2600 725 173 119 55 chr15 29059510 29059712 -72320809 + L1MB5 LINE L1 5947 6161 -13 315 0 0 0 chr15 29059723 29059758 -72320763 + (TA)n Simple_repeat Simple_repeat 1 35 0 2129 109 3 31 chr15 29059761 29060082 -72320439 - AluSx SINE Alu 0 312 1 2490 71 3 10 chr15 29060082 29060391 -72320130 - AluY SINE Alu -4 307 1 279 0 0 0 chr15 29060393 29060424 -72320097 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4816 250 123 25 chr15 29060431 29061460 -72319061 - L2 LINE L2 -713 2601 1674 198 0 0 0 chr15 29061460 29061482 -72319039 + (CA)n Simple_repeat Simple_repeat 2 23 0 4816 250 123 25 chr15 29061482 29062289 -72318232 - L2 LINE L2 -1640 1674 586 2113 235 73 93 chr15 29062921 29063724 -72316797 - MER21B LTR ERV1 -64 799 13 741 131 31 0 chr15 29064023 29064343 -72316178 + (TA)n Simple_repeat Simple_repeat 1 330 0 204 347 0 0 chr15 29064870 29064945 -72315576 - L3 LINE CR1 -4 1573 1499 362 331 68 37 chr15 29065081 29065377 -72315144 - L3 LINE CR1 -234 1343 1039 2214 116 3 25 chr15 29065439 29065757 -72314764 - AluSx SINE Alu -1 311 1 1130 68 0 0 chr15 29065761 29065894 -72314627 - AluSq/x SINE Alu -179 133 1 2392 94 3 0 chr15 29066188 29066497 -72314024 - AluSx SINE Alu -2 310 1 558 184 10 0 chr15 29066633 29066731 -72313790 - L1PB4 LINE L1 -5 6151 6053 2830 154 30 20 chr15 29066731 29067232 -72313289 + L1PB4 LINE L1 5560 6065 -91 918 256 61 104 chr15 29067991 29068148 -72312373 - MLT1J LTR MaLR -6 505 343 2219 114 0 13 chr15 29068148 29068455 -72312066 - AluSx SINE Alu -9 303 1 918 256 61 104 chr15 29068455 29068825 -72311696 - MLT1J LTR MaLR -168 343 1 3260 191 60 76 chr15 29069157 29069976 -72310545 + MER21B LTR ERV1 1 806 -57 5160 151 19 22 chr15 29070983 29071889 -72308632 - MER4D LTR ERV1 0 903 1 2146 114 7 7 chr15 29073581 29073879 -72306642 - AluSx SINE Alu -14 298 1 184 307 102 0 chr15 29074507 29074595 -72305926 + MIR3 SINE MIR 89 185 -23 2621 59 0 0 chr15 29075534 29075841 -72304680 - AluY SINE Alu -4 307 1 188 195 24 37 chr15 29075953 29076035 -72304486 + CT-rich Low_complexity Low_complexity 3 83 0 742 160 24 0 chr15 29076442 29076567 -72303954 + FLAM_C SINE Alu 5 132 -1 1833 154 17 7 chr15 29076812 29077111 -72303410 - AluJo SINE Alu -6 306 5 245 221 44 44 chr15 29078311 29078379 -72302142 + MIR SINE MIR 73 140 -122 1062 123 0 59 chr15 29079680 29079867 -72300654 - AluSg/x SINE Alu 0 312 137 27 0 0 0 chr15 29081255 29081282 -72299239 + AT_rich Low_complexity Low_complexity 1 27 0 2440 63 0 20 chr15 29081291 29081592 -72298929 + AluY SINE Alu 1 295 -16 264 30 0 0 chr15 29081617 29081650 -72298871 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 286 318 0 0 chr15 29081776 29081864 -72298657 + L3b LINE CR1 1375 1462 -121 497 288 51 68 chr15 29082304 29082835 -72297686 + L1MEd LINE L1 657 1178 -4941 2298 102 7 13 chr15 29084687 29084990 -72295531 + AluSx SINE Alu 2 302 -10 1224 116 0 0 chr15 29084992 29085156 -72295365 + AluSg/x SINE Alu 136 299 -13 267 286 17 17 chr15 29087682 29087801 -72292720 + CT-rich Low_complexity Low_complexity 1 119 0 2255 89 3 0 chr15 29088912 29089204 -72291317 + AluSq SINE Alu 1 293 -20 2188 108 3 7 chr15 29089460 29089793 -72290728 + AluSq SINE Alu 1 332 0 216 97 0 0 chr15 29092073 29092104 -72288417 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 367 286 18 9 chr15 29092105 29092217 -72288304 - L2 LINE L2 -12 3301 3189 24 32 0 0 chr15 29092611 29092642 -72287879 + AT_rich Low_complexity Low_complexity 1 31 0 2189 116 0 6 chr15 29095794 29096105 -72284416 - AluSq SINE Alu -4 309 1 440 256 74 0 chr15 29097852 29097973 -72282548 + MIR SINE MIR 58 187 -75 15220 126 31 11 chr15 29097984 29099538 -72280983 + Tigger1 DNA MER2_type 1 1621 -797 2440 63 3 16 chr15 29099538 29099841 -72280680 + AluY SINE Alu 1 299 -12 15220 126 31 11 chr15 29099841 29100646 -72279875 + Tigger1 DNA MER2_type 1621 2408 -10 189 346 29 19 chr15 29101959 29102063 -72278458 - L2 LINE L2 -50 3222 3118 2100 128 3 3 chr15 29102083 29102388 -72278133 + AluSx SINE Alu 1 305 -7 2328 87 0 7 chr15 29102444 29102744 -72277777 + AluSx SINE Alu 1 298 -14 2200 101 27 13 chr15 29102795 29103093 -72277428 + AluSq SINE Alu 1 302 -11 1875 168 0 7 chr15 29104072 29104358 -72276163 + AluSx SINE Alu 1 284 -28 351 0 0 0 chr15 29104358 29104397 -72276124 + (CA)n Simple_repeat Simple_repeat 2 40 0 304 221 13 13 chr15 29105521 29105598 -72274923 + CT-rich Low_complexity Low_complexity 6 82 0 472 282 13 13 chr15 29105944 29106093 -72274428 + MIR3 SINE MIR 58 206 -2 313 215 43 21 chr15 29106178 29106271 -72274250 - L1M4 LINE L1 -2947 3199 3105 325 250 27 36 chr15 29109820 29109932 -72270589 - L2 LINE L2 0 3272 3162 249 276 0 0 chr15 29110072 29110130 -72270391 + L2 LINE L2 3225 3282 -31 360 308 171 31 chr15 29110144 29110610 -72269911 - L2 LINE L2 -32 3281 2755 2180 132 3 0 chr15 29111142 29111452 -72269069 + AluJb SINE Alu 1 311 -1 191 309 32 11 chr15 29111683 29111777 -72268744 - MIR SINE MIR -16 246 151 2497 66 0 3 chr15 29113244 29113547 -72266974 + AluY SINE Alu 1 302 -9 209 289 0 0 chr15 29114024 29114069 -72266452 - L2 LINE L2 -14 3258 3214 270 347 110 23 chr15 29114485 29114658 -72265863 - L2 LINE L2 -955 2359 2172 303 277 128 14 chr15 29115381 29115453 -72265068 + MER5A DNA MER1_type 19 81 -108 2218 114 3 3 chr15 29115453 29115760 -72264761 - AluSq SINE Alu -6 307 1 303 277 128 14 chr15 29115760 29115835 -72264686 + MER5A DNA MER1_type 81 183 -6 1141 224 91 100 chr15 29116034 29116610 -72263911 - MLT1H1 LTR MaLR -2 553 5 312 270 305 6 chr15 29116908 29117082 -72263439 + MIR SINE MIR 19 244 -18 2620 58 0 3 chr15 29119033 29119342 -72261179 - AluY SINE Alu -3 308 1 428 273 111 6 chr15 29119490 29119704 -72260817 + MIR SINE MIR 2 241 -21 2325 91 0 10 chr15 29120305 29120603 -72259918 + AluSg SINE Alu 1 295 -15 311 259 118 0 chr15 29120604 29120739 -72259782 + L1ME3A LINE L1 5626 5776 -345 1026 244 167 26 chr15 29121168 29121659 -72258862 - L1ME3A LINE L1 -223 5947 5388 21 36 0 0 chr15 29122214 29122242 -72258279 + AT_rich Low_complexity Low_complexity 1 28 0 2232 110 0 13 chr15 29124118 29124417 -72256104 + AluSg SINE Alu 1 295 -15 2300 80 0 20 chr15 29125411 29125710 -72254811 - AluSx SINE Alu -19 293 1 436 258 50 3 chr15 29126243 29126404 -72254117 - MIR SINE MIR -63 145 19 2225 75 4 7 chr15 29126857 29127165 -72253356 - AluSg SINE Alu 0 307 1 1424 181 19 98 chr15 29127338 29127758 -72252763 - MLT1B LTR MaLR -3 387 1 2238 101 3 10 chr15 29128417 29128714 -72251807 - AluSp SINE Alu -18 295 1 968 276 158 27 chr15 29131465 29131947 -72248574 + L2 LINE L2 1402 1946 -1368 706 94 21 0 chr15 29132034 29132130 -72248391 - AluS SINE Alu -214 99 2 300 213 16 0 chr15 29132135 29132196 -72248325 + L2 LINE L2 3237 3298 -15 1400 163 43 25 chr15 29132439 29132715 -72247806 - AluJb SINE Alu -31 281 1 2032 120 20 20 chr15 29132824 29133125 -72247396 - AluSx SINE Alu -11 301 1 2183 93 52 0 chr15 29138448 29138566 -72241955 + AluY SINE Alu 1 111 -200 269 26 26 0 chr15 29138566 29138604 -72241917 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2183 93 52 0 chr15 29138604 29138775 -72241746 + AluY SINE Alu 111 305 -6 517 236 224 24 chr15 29138869 29139115 -72241406 + L1ME3A LINE L1 5876 6170 0 366 200 70 61 chr15 29139365 29139480 -72241041 - MER5B DNA MER1_type -62 116 1 525 294 289 7 chr15 29140059 29140471 -72240050 + L2 LINE L2 2115 2642 -672 436 341 29 65 chr15 29140620 29140866 -72239655 + L2 LINE L2 3000 3236 -36 23 33 0 0 chr15 29141238 29141268 -72239253 + AT_rich Low_complexity Low_complexity 1 30 0 2150 119 0 3 chr15 29141491 29141786 -72238735 + AluSq SINE Alu 1 294 -19 241 154 91 118 chr15 29142692 29142802 -72237719 + MER5A DNA MER1_type 48 154 -35 2477 77 7 0 chr15 29143296 29143606 -72236915 - AluSx SINE Alu 0 312 1 327 146 66 13 chr15 29143670 29143821 -72236700 + (TA)n Simple_repeat Simple_repeat 2 160 0 212 363 112 24 chr15 29143918 29144249 -72236272 + L2 LINE L2 2316 2675 -639 443 267 87 6 chr15 29144348 29144509 -72236012 - MIR SINE MIR -12 250 77 180 245 0 138 chr15 29144813 29144907 -72235614 - L2 LINE L2 -1 3312 3232 2299 102 0 0 chr15 29146496 29146790 -72233731 + AluSx SINE Alu 1 294 -18 1076 96 0 0 chr15 29147739 29147875 -72232646 + AluSq/x SINE Alu 1 136 -176 2115 114 0 0 chr15 29147875 29148181 -72232340 + AluSg SINE Alu 1 306 0 371 279 163 54 chr15 29148304 29148784 -72231737 + L1M4 LINE L1 4533 5064 -1082 4229 28 0 4 chr15 29149275 29149774 -72230747 + L1PA3 LINE L1 5659 6155 0 830 273 60 36 chr15 29149774 29150299 -72230222 + L1M4c LINE L1 1559 2246 -4317 1770 178 16 3 chr15 29151287 29151591 -72228930 - AluJo SINE Alu -4 308 1 638 202 0 0 chr15 29151601 29151715 -72228806 - AluJb SINE Alu -14 298 185 1667 164 3 50 chr15 29152789 29153112 -72227409 + AluJo SINE Alu 1 308 -4 349 271 126 33 chr15 29154061 29154212 -72226309 - MIR3 SINE MIR -11 197 33 475 161 0 58 chr15 29154270 29154357 -72226164 - FLAM_A SINE Alu -59 83 2 517 255 83 108 chr15 29156272 29156355 -72224166 - MLT1J LTR MaLR -7 504 420 2271 124 10 41 chr15 29156355 29156515 -72224006 + THE1C LTR MaLR 1 164 -211 1910 97 0 12 chr15 29156515 29156772 -72223749 - AluSc SINE Alu -19 290 37 2271 124 10 41 chr15 29156772 29156998 -72223523 + THE1C LTR MaLR 164 375 0 517 255 83 108 chr15 29156998 29157431 -72223090 - MLT1J LTR MaLR -91 420 1 291 344 129 60 chr15 29158351 29158784 -72221737 - L2 LINE L2 -2 3270 2808 24 0 0 0 chr15 29158876 29158900 -72221621 + AT_rich Low_complexity Low_complexity 1 24 0 1679 93 138 4 chr15 29158974 29159221 -72221300 - AluSc SINE Alu -19 280 1 26 0 0 0 chr15 29159275 29159301 -72221220 + AT_rich Low_complexity Low_complexity 1 26 0 245 300 50 0 chr15 29160509 29160569 -72219952 + L2 LINE L2 3193 3255 -17 1504 193 39 3 chr15 29161035 29161320 -72219201 + AluJb SINE Alu 1 295 -17 10621 52 11 2 chr15 29161441 29163556 -72216965 - L1PA6 LINE L1 -4 6150 4021 533 188 111 0 chr15 29163628 29163745 -72216776 + FRAM SINE Alu 1 126 -50 2203 128 0 0 chr15 29164156 29164454 -72216067 - AluSx SINE Alu -14 298 1 21 0 0 0 chr15 29164718 29164739 -72215782 + AT_rich Low_complexity Low_complexity 1 21 0 1781 128 43 7 chr15 29164743 29165059 -72215462 + AluY SINE Alu 1 326 0 1859 167 7 7 chr15 29165528 29165828 -72214693 - AluJo SINE Alu -12 300 1 189 317 5 156 chr15 29165829 29166028 -72214493 + L2 LINE L2 2588 2756 -558 264 200 77 0 chr15 29166049 29166114 -72214407 + L1MEc LINE L1 27 96 -6300 1876 112 22 25 chr15 29166299 29166613 -72213908 - THE1C LTR MaLR -62 313 1 1457 75 28 0 chr15 29166613 29166826 -72213695 + L1PB1 LINE L1 5562 5780 -371 216 0 0 0 chr15 29166826 29166850 -72213671 + (TG)n Simple_repeat Simple_repeat 2 25 0 365 269 5 10 chr15 29166887 29167101 -72213420 + (CATATA)n Simple_repeat Simple_repeat 1 212 0 2419 82 79 0 chr15 29167101 29167443 -72213078 + L1PB1 LINE L1 5782 6150 -1 389 148 170 30 chr15 29167459 29167594 -72212927 + Charlie5 DNA MER1_type 2407 2560 -52 1921 108 68 20 chr15 29167935 29168230 -72212291 - AluSx SINE Alu -3 309 1 2108 99 0 7 chr15 29168393 29168677 -72211844 - AluSg SINE Alu -9 301 20 430 297 58 14 chr15 29168884 29169022 -72211499 + MER5B DNA MER1_type 1 144 -34 1581 124 46 11 chr15 29169654 29169936 -72210585 - L1MB2 LINE L1 -5 6166 5875 267 310 150 9 chr15 29170116 29170229 -72210292 + L2 LINE L2 3134 3262 -10 1788 141 3 33 chr15 29170251 29170550 -72209971 - AluSx SINE Alu -22 290 1 1841 123 24 24 chr15 29171909 29172201 -72208320 - AluJo SINE Alu -11 301 10 940 241 28 0 chr15 29172945 29173157 -72207364 - MER58A DNA MER1_type -2 222 5 2351 111 67 8 chr15 29173190 29173624 -72206897 + MER1A DNA MER1_type 49 528 -1 1074 86 14 0 chr15 29173719 29173859 -72206662 + AluSg/x SINE Alu 154 295 -15 1140 195 47 9 chr15 29173883 29174098 -72206423 - AluJb SINE Alu -89 223 1 23 78 0 0 chr15 29174348 29174399 -72206122 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr15 29175278 29175301 -72205220 + AT_rich Low_complexity Low_complexity 1 23 0 210 37 0 0 chr15 29175464 29175491 -72205030 + (TA)n Simple_repeat Simple_repeat 1 27 0 2048 75 0 4 chr15 29175513 29175766 -72204755 + AluSq SINE Alu 45 296 -17 1483 233 0 0 chr15 29175769 29176044 -72204477 - AluSx SINE Alu -37 275 1 239 273 11 11 chr15 29176044 29176074 -72204447 + (TA)n Simple_repeat Simple_repeat 1 30 -58 2050 148 33 0 chr15 29176074 29176411 -72204110 + MER7A DNA MER2_type 1 346 0 239 273 11 11 chr15 29176411 29176468 -72204053 + (TA)n Simple_repeat Simple_repeat 29 88 0 1078 266 54 61 chr15 29176657 29177216 -72203305 - LTR67 LTR ERVL 0 557 3 2402 184 70 13 chr15 29177343 29177940 -72202581 - L1M2 LINE L1 -1720 4426 3796 428 190 99 0 chr15 29177953 29178074 -72202447 + L1M2 LINE L1 4397 4529 -1617 * 2538 185 20 31 chr15 29178073 29178810 -72201711 + L1M2 LINE L1 5073 5792 -520 509 93 0 157 chr15 29178848 29178898 -72201623 - LTR62 LTR ERVK -626 93 67 2348 84 0 3 chr15 29178898 29179197 -72201324 - AluY SINE Alu -13 298 1 509 93 0 157 chr15 29179197 29179254 -72201267 - LTR62 LTR ERVK -652 67 3 1948 164 3 0 chr15 29179575 29179873 -72200648 + AluJb SINE Alu 1 299 -13 2342 88 10 0 chr15 29180416 29180721 -72199800 + AluY SINE Alu 1 308 -3 284 106 64 0 chr15 29181417 29181464 -72199057 + MLT1C LTR MaLR 1 50 -417 25 0 0 0 chr15 29181565 29181590 -72198931 + AT_rich Low_complexity Low_complexity 1 25 0 2457 91 0 0 chr15 29181612 29181919 -72198602 + AluSx SINE Alu 1 307 -5 669 305 40 14 chr15 29181993 29182216 -72198305 + MIR SINE MIR 25 253 -9 1633 193 23 3 chr15 29182307 29182607 -72197914 + AluJb SINE Alu 1 306 -6 225 228 18 18 chr15 29183062 29183119 -72197402 - MIR3 SINE MIR -32 176 120 1021 160 27 18 chr15 29183124 29183349 -72197172 - L1MB3 LINE L1 -363 5820 5594 1858 142 19 19 chr15 29183351 29183676 -72196845 + L1MB3 LINE L1 5852 6176 -7 245 337 51 10 chr15 29183739 29183837 -72196684 - MIR3 SINE MIR -98 110 9 853 161 37 0 chr15 29184849 29185010 -72195511 - L1MB3 LINE L1 -8 6175 6009 1123 172 103 11 chr15 29185277 29185539 -72194982 - L1MB3 LINE L1 -188 5995 5710 2027 95 26 43 chr15 29186610 29186915 -72193606 + AluSx SINE Alu 1 300 -12 403 296 122 24 chr15 29188817 29189035 -72191486 + MIR SINE MIR 20 256 -6 2436 80 3 0 chr15 29189652 29189952 -72190569 - AluSp SINE Alu -12 301 1 225 274 0 0 chr15 29190493 29190544 -72189977 + L1 LINE L1 4059 4109 -2037 617 241 91 26 chr15 29190636 29190868 -72189653 + L1MEc LINE L1 1745 1991 -4405 397 310 33 27 chr15 29191172 29191356 -72189165 + L1 LINE L1 4891 5075 -1071 1391 266 95 8 chr15 29191374 29191871 -72188650 + L1MC4 LINE L1 6454 6993 -1049 6146 135 80 9 chr15 29191911 29193176 -72187345 + L1PBa LINE L1 1 1500 -5363 2183 83 20 4 chr15 29193172 29193523 -72186998 + L1P5 LINE L1 5210 5565 -586 * 1626 105 43 23 chr15 29193527 29193785 -72186736 - THE1C LTR MaLR -2 373 111 259 312 168 39 chr15 29194432 29194560 -72185961 + MIR SINE MIR 7 149 -61 802 167 8 15 chr15 29194565 29194697 -72185824 + AluJo SINE Alu 6 136 -176 1964 136 21 0 chr15 29194706 29194986 -72185535 - AluSx SINE Alu -26 286 1 29 28 0 0 chr15 29194988 29195024 -72185497 + AT_rich Low_complexity Low_complexity 1 36 0 2219 64 0 4 chr15 29195024 29195315 -72185206 + AluY SINE Alu 21 310 0 180 300 33 0 chr15 29195324 29195384 -72185137 + MIR SINE MIR 178 239 -23 2161 183 140 78 chr15 29195581 29196182 -72184339 + MER69 DNA AcHobo 3 640 -1886 937 148 74 5 chr15 29196199 29196388 -72184133 + MER69 DNA AcHobo 1867 2068 -458 2528 73 0 0 chr15 29198704 29199005 -72181516 + AluY SINE Alu 1 301 -10 2197 97 7 0 chr15 29200240 29200519 -72180002 + AluSq SINE Alu 1 281 -32 309 51 0 0 chr15 29200522 29200561 -72179960 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 659 241 142 0 chr15 29200561 29200773 -72179748 - MER112 DNA MER1_type -18 242 1 306 0 0 0 chr15 29201187 29201221 -72179300 + (CA)n Simple_repeat Simple_repeat 1 34 0 * 513 0 0 0 chr15 29201220 29201277 -72179244 + (GA)n Simple_repeat Simple_repeat 2 58 0 1959 152 0 0 chr15 29201372 29201655 -72178866 + AluSx SINE Alu 1 283 -29 1566 180 58 4 chr15 29201788 29202066 -72178455 + AluJo SINE Alu 1 293 -19 484 309 100 18 chr15 29202444 29202664 -72177857 + MIR SINE MIR 7 244 -18 227 352 14 0 chr15 29202682 29202753 -72177768 + MIR3 SINE MIR 108 179 -29 408 200 0 0 chr15 29203160 29203250 -72177271 + (TATATG)n Simple_repeat Simple_repeat 1 90 0 22 0 0 0 chr15 29203571 29203593 -72176928 + AT_rich Low_complexity Low_complexity 1 22 0 426 328 115 10 chr15 29203730 29204035 -72176486 + L1M4 LINE L1 3964 4300 -1846 358 246 70 25 chr15 29204096 29204295 -72176226 + L1M4 LINE L1 4398 4605 -1541 289 325 68 0 chr15 29204354 29204545 -72175976 + L1M4 LINE L1 4628 4831 -1315 2565 58 0 0 chr15 29204545 29204854 -72175667 + AluY SINE Alu 1 309 -2 2563 40 3 0 chr15 29204948 29205244 -72175277 + AluY SINE Alu 1 297 -14 1897 179 28 17 chr15 29205249 29205606 -72174915 + MLT1A2 LTR MaLR 3 363 -11 285 98 0 0 chr15 29205628 29205669 -72174852 + (A)n Simple_repeat Simple_repeat 1 41 0 2607 55 0 0 chr15 29205869 29206177 -72174344 + AluY SINE Alu 1 308 -3 304 215 35 62 chr15 29206178 29206322 -72174199 + L1M4 LINE L1 5152 5291 -855 2144 97 7 4 chr15 29206557 29206835 -72173686 - AluSq SINE Alu -34 279 1 361 310 103 13 chr15 29207250 29207405 -72173116 + MIR3 SINE MIR 29 197 -11 1696 224 11 32 chr15 29207411 29207572 -72172949 + MLT1A2 LTR MaLR 1 164 -210 621 118 0 0 chr15 29207572 29207665 -72172856 - L1MB2 LINE L1 -1 6170 6078 1696 224 11 32 chr15 29207665 29207874 -72172647 + MLT1A2 LTR MaLR 164 363 -11 2340 93 0 0 chr15 29208243 29208534 -72171987 - AluSg SINE Alu -19 291 1 393 280 35 14 chr15 29208708 29208851 -72171670 - MER103 DNA DNA -11 155 10 2532 71 0 3 chr15 29210134 29210445 -72170076 - AluY SINE Alu -1 310 1 3396 145 79 37 chr15 29210649 29211261 -72169260 + L1MB2 LINE L1 5481 6124 -47 1898 131 50 3 chr15 29211261 29211544 -72168977 + AluSx SINE Alu 14 309 -3 3396 145 79 37 chr15 29211544 29211587 -72168934 + L1MB2 LINE L1 6124 6164 -7 828 186 0 0 chr15 29211599 29211728 -72168793 - FLAM_C SINE Alu -4 129 1 2107 51 16 0 chr15 29212225 29212479 -72168042 + AluY SINE Alu 1 258 -53 195 42 0 0 chr15 29212593 29212617 -72167904 + (A)n Simple_repeat Simple_repeat 1 24 0 332 196 157 39 chr15 29212837 29212939 -72167582 - L2 LINE L2 -2 3311 3198 2461 73 0 0 chr15 29213110 29213411 -72167110 + AluY SINE Alu 1 301 -10 1854 169 3 7 chr15 29213893 29214194 -72166327 - AluJo SINE Alu -12 300 1 180 317 5 156 chr15 29214195 29214394 -72166127 + L2 LINE L2 2588 2756 -558 289 222 69 0 chr15 29214415 29214487 -72166034 + L1MEc LINE L1 27 103 -6293 1609 205 20 11 chr15 29214536 29214892 -72165629 + L1MEc LINE L1 569 927 -5469 327 292 124 27 chr15 29215504 29215689 -72164832 + L2 LINE L2 2550 2752 -562 2215 100 3 7 chr15 29215770 29216070 -72164451 - AluSc SINE Alu -10 299 1 421 196 12 0 chr15 29216072 29216174 -72164347 - L1MC4 LINE L1 -2 8040 7672 213 156 0 0 chr15 29216205 29216237 -72164284 + MIR SINE MIR 218 249 -13 201 245 41 0 chr15 29216237 29216254 -72164267 + L2 LINE L2 3263 3313 0 292 316 43 8 chr15 29216292 29216409 -72164112 + HAL1 LINE L1 3 123 -2384 364 292 211 34 chr15 29216617 29217035 -72163486 - L2 LINE L2 -4 3309 2818 551 224 71 41 chr15 29217061 29217231 -72163290 - MER5B DNA MER1_type 0 178 4 311 284 34 54 chr15 29217238 29217386 -72163135 + HAL1 LINE L1 473 617 -1890 1079 153 12 0 chr15 29217694 29217864 -72162657 + MER2 DNA MER2_type 22 193 -152 29 60 0 0 chr15 29217868 29217918 -72162603 + AT_rich Low_complexity Low_complexity 1 50 0 2462 79 0 0 chr15 29218276 29218580 -72161941 - AluSg1 SINE Alu -5 304 1 27 29 0 0 chr15 29218580 29218614 -72161907 + AT_rich Low_complexity Low_complexity 1 34 0 2137 117 3 3 chr15 29218859 29219158 -72161363 - AluSx SINE Alu -13 299 1 2128 89 20 14 chr15 29219213 29219505 -72161016 - AluY SINE Alu -17 294 1 1164 159 45 0 chr15 29219506 29219726 -72160795 + L1MA4 LINE L1 6060 6289 -11 1058 184 32 5 chr15 29219731 29219948 -72160573 + L1MB7 LINE L1 5962 6184 0 4727 115 49 7 chr15 29219961 29220691 -72159830 + L1MA9 LINE L1 5552 6312 0 1808 170 6 6 chr15 29220909 29221220 -72159301 + AluJo SINE Alu 1 311 -1 246 183 33 17 chr15 29221220 29221280 -72159241 + GA-rich Low_complexity Low_complexity 1 61 0 1516 55 6 0 chr15 29221579 29221761 -72158760 + L1PA6 LINE L1 5972 6154 0 8959 52 0 14 chr15 29223127 29224992 -72155529 + L1PA6 LINE L1 4291 6144 -10 796 161 71 30 chr15 29226518 29226719 -72153802 - L1MC/D LINE L1 -748 5398 5305 2583 183 50 34 chr15 29227592 29228073 -72152448 + L1ME2 LINE L1 5558 6052 -112 795 239 68 0 chr15 29228073 29228249 -72152272 + MER5A DNA MER1_type 1 188 -1 2583 183 50 34 chr15 29228249 29228362 -72152159 + L1ME2 LINE L1 6052 6162 -2 1913 155 0 34 chr15 29228484 29228806 -72151715 + AluSx SINE Alu 2 312 0 309 328 21 47 chr15 29229223 29229415 -72151106 + L2 LINE L2 2897 3083 -189 191 277 114 54 chr15 29229528 29229694 -72150827 + L2 LINE L2 2717 2892 -422 205 348 72 0 chr15 29230236 29230305 -72150216 + MIR3 SINE MIR 108 181 -27 22 35 0 0 chr15 29230667 29230696 -72149825 + AT_rich Low_complexity Low_complexity 1 29 0 212 298 117 11 chr15 29230987 29231081 -72149440 + L2 LINE L2 3201 3304 -9 1937 154 0 26 chr15 29231182 29231493 -72149028 - AluJo SINE Alu -9 303 1 2728 42 0 0 chr15 29231718 29232027 -72148494 + AluY SINE Alu 3 311 0 585 308 53 19 chr15 29232512 29232775 -72147746 + L2 LINE L2 2358 2629 -685 1256 102 6 0 chr15 29232955 29233132 -72147389 + AluY SINE Alu 134 311 0 250 233 14 27 chr15 29233280 29233353 -72147168 + MIR3 SINE MIR 135 206 -2 279 120 0 80 chr15 29233370 29233420 -72147101 - L2 LINE L2 -17 3255 3210 2489 86 0 0 chr15 29233697 29234001 -72146520 + AluSx SINE Alu 1 304 -8 613 311 40 4 chr15 29235128 29235353 -72145168 + MIR SINE MIR 28 260 -2 521 86 0 14 chr15 29236872 29236970 -72143551 + AluSg/x SINE Alu 215 311 0 2214 81 24 3 chr15 29237991 29238287 -72142234 + AluSg SINE Alu 1 302 -8 498 226 53 111 chr15 29239182 29239425 -72141096 - L2 LINE L2 0 3313 3085 648 139 115 25 chr15 29239453 29239575 -72140946 + FLAM_C SINE Alu 1 133 0 2392 82 0 31 chr15 29239656 29239974 -72140547 + AluSg SINE Alu 1 308 -2 1930 116 47 0 chr15 29239986 29240263 -72140258 + AluSx SINE Alu 1 290 -22 519 233 9 9 chr15 29240340 29240456 -72140065 - LTR67 LTR ERVL -10 547 432 937 142 116 5 chr15 29240614 29240804 -72139717 + L1MC4 LINE L1 7692 7902 -140 234 128 0 0 chr15 29240840 29240879 -72139642 + (TG)n Simple_repeat Simple_repeat 2 40 0 371 179 60 12 chr15 29241316 29241400 -72139121 + L1ME4a LINE L1 5976 6063 -58 314 277 44 66 chr15 29241954 29242091 -72138430 + L3 LINE CR1 1298 1431 -146 2852 220 52 57 chr15 29242113 29242331 -72138190 + L1M4 LINE L1 26 244 -6298 2120 102 0 46 chr15 29242331 29242636 -72137885 + AluSx SINE Alu 14 304 -8 2852 220 52 57 chr15 29242636 29243243 -72137278 + L1M4 LINE L1 244 847 -5695 1595 204 6 10 chr15 29243368 29243681 -72136840 + AluJb SINE Alu 1 312 0 483 285 25 38 chr15 29243755 29243913 -72136608 - MIR SINE MIR -75 187 32 986 122 0 0 chr15 29244486 29244617 -72135904 + FLAM_C SINE Alu 3 133 0 2211 108 0 14 chr15 29245057 29245353 -72135168 + AluSx SINE Alu 1 292 -20 2009 102 63 3 chr15 29245429 29245713 -72134808 - AluY SINE Alu -10 301 1 1562 162 47 7 chr15 29245725 29246003 -72134518 - AluJo SINE Alu -23 289 1 2525 84 0 0 chr15 29246253 29246562 -72133959 - AluSq SINE Alu -4 309 1 336 102 0 0 chr15 29247088 29247137 -72133384 + (CA)n Simple_repeat Simple_repeat 2 50 0 536 281 34 0 chr15 29247691 29247837 -72132684 + Charlie2 DNA MER1_type 6 156 -2626 2493 243 105 12 chr15 29247916 29248319 -72132202 + Charlie2 DNA MER1_type 1851 2215 -647 2163 114 3 3 chr15 29248319 29248617 -72131904 + AluSx SINE Alu 1 298 -14 2493 243 105 12 chr15 29248617 29248879 -72131642 + Charlie2 DNA MER1_type 2215 2451 -411 2191 116 3 3 chr15 29248879 29249181 -72131340 - AluSc SINE Alu -7 302 1 2493 243 105 12 chr15 29249181 29249257 -72131264 + Charlie2 DNA MER1_type 2451 2519 -343 1735 178 6 19 chr15 29249257 29249572 -72130949 + AluJo SINE Alu 1 311 -1 2493 243 105 12 chr15 29249572 29249743 -72130778 + Charlie2 DNA MER1_type 2519 2850 -12 370 300 18 0 chr15 29250561 29250671 -72129850 + MIR SINE MIR 2 113 -149 404 143 63 0 chr15 29250931 29250994 -72129527 + AluS SINE Alu 226 292 -19 2007 98 11 21 chr15 29251003 29251326 -72129195 - AluY SINE Alu 0 320 1 275 284 0 12 chr15 29251327 29251408 -72129113 - L1ME4a LINE L1 -88 6033 5954 2502 37 0 47 chr15 29251410 29251731 -72128790 - AluY SINE Alu -5 306 1 2500 93 0 0 chr15 29251884 29252197 -72128324 - AluSp SINE Alu 0 313 1 2244 127 0 10 chr15 29252360 29252674 -72127847 - AluSx SINE Alu -1 311 1 2021 195 69 25 chr15 29252742 29253189 -72127332 - MLT1C LTR MaLR 0 467 1 2284 97 0 19 chr15 29253273 29253584 -72126937 + AluSc SINE Alu 1 305 -4 2086 149 12 18 chr15 29253585 29253927 -72126594 - THE1C LTR MaLR -35 340 1 191 272 250 0 chr15 29253990 29254082 -72126439 - L2 LINE L2 0 3313 3199 268 206 192 0 chr15 29256877 29256950 -72123571 + MIR SINE MIR 70 156 -106 845 184 75 9 chr15 29256973 29257231 -72123290 + L1MA9 LINE L1 5908 6280 -32 25 0 0 0 chr15 29257231 29257256 -72123265 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr15 29258013 29258039 -72122482 + AT_rich Low_complexity Low_complexity 1 26 0 2310 100 7 0 chr15 29258097 29258396 -72122125 + AluY SINE Alu 1 301 -10 2105 106 0 3 chr15 29258841 29259124 -72121397 + AluSx SINE Alu 14 295 -17 45 0 0 0 chr15 29259124 29259169 -72121352 + AT_rich Low_complexity Low_complexity 1 45 0 226 246 49 16 chr15 29259369 29259430 -72121091 - MIR3 SINE MIR -31 177 115 262 244 171 12 chr15 29259434 29259516 -72121005 - L2 LINE L2 -2 3270 3176 239 229 0 0 chr15 29259521 29259569 -72120952 - MIR SINE MIR -103 105 58 466 86 43 29 chr15 29259897 29259967 -72120554 - L1PA14 LINE L1 -4 6157 6087 2263 103 0 0 chr15 29260087 29260377 -72120144 - AluSc SINE Alu -19 290 1 2269 86 10 10 chr15 29260592 29260893 -72119628 - AluSq SINE Alu -12 301 1 2272 109 0 0 chr15 29261191 29261485 -72119036 + AluSq SINE Alu 1 294 -19 2160 101 7 3 chr15 29261487 29261783 -72118738 + AluSq SINE Alu 1 297 -16 218 281 0 16 chr15 29263352 29263416 -72117105 + GA-rich Low_complexity Low_complexity 3 65 0 340 196 0 0 chr15 29263508 29263573 -72116948 - Alu SINE Alu -250 52 1 357 306 69 38 chr15 29263759 29263919 -72116602 - MIR3 SINE MIR -23 185 21 401 303 23 0 chr15 29264009 29264141 -72116380 + MER103 DNA DNA 31 165 -1 1247 158 0 87 chr15 29264313 29264566 -72115955 + AluJo SINE Alu 24 254 -58 2097 117 0 32 chr15 29264688 29264997 -72115524 - AluSc SINE Alu -10 299 1 592 253 56 0 chr15 29265040 29265202 -72115319 - MIR SINE MIR -16 246 76 840 189 7 0 chr15 29265205 29265358 -72115163 + FRAM SINE Alu 1 153 -23 1915 162 41 36 chr15 29265506 29265870 -72114651 - MLT2D LTR ERVL -48 366 1 2331 137 118 44 chr15 29265874 29266111 -72114410 + LTR54 LTR ERV1 1 219 -291 351 0 0 0 chr15 29266111 29266150 -72114371 + (CA)n Simple_repeat Simple_repeat 2 40 0 2331 137 118 44 chr15 29266150 29266387 -72114134 + LTR54 LTR ERV1 219 510 0 2299 116 0 10 chr15 29266441 29266752 -72113769 - AluSx SINE Alu -4 308 1 318 309 129 72 chr15 29267108 29267525 -72112996 + L2 LINE L2 2817 3257 -15 188 247 86 65 chr15 29267878 29267971 -72112550 - L2 LINE L2 -908 2406 2312 1933 118 26 4 chr15 29268151 29268423 -72112098 + AluSq SINE Alu 3 280 -33 1403 43 0 0 chr15 29268423 29268586 -72111935 + AluY SINE Alu 134 296 -15 296 245 65 102 chr15 29268876 29269247 -72111274 + HAL1b LINE L1 1195 6121 0 2456 66 0 3 chr15 29269829 29270131 -72110390 + AluY SINE Alu 1 301 -10 1785 152 3 36 chr15 29274081 29274383 -72106138 + AluJo SINE Alu 2 293 -19 1638 184 63 79 chr15 29275560 29275674 -72104847 - L1MC4 LINE L1 -6 8036 7922 195 42 0 0 chr15 29275674 29275698 -72104823 + (TG)n Simple_repeat Simple_repeat 1 24 0 1638 184 63 79 chr15 29275698 29275780 -72104741 - L1MC4 LINE L1 -120 7922 7840 1637 162 92 3 chr15 29275780 29276064 -72104457 - AluJb SINE Alu -3 309 1 1638 184 63 79 chr15 29276064 29276360 -72104161 - L1MC4 LINE L1 -202 7840 7551 2592 40 0 0 chr15 29276371 29276668 -72103853 - AluY SINE Alu -14 297 1 1733 97 0 0 chr15 29276697 29276914 -72103607 + AluSg SINE Alu 1 217 -93 729 159 0 0 chr15 29276914 29277027 -72103494 + AluSc SINE Alu 186 298 -11 641 184 66 33 chr15 29277036 29277188 -72103333 - L1MC4a LINE L1 -364 7444 7288 724 248 78 36 chr15 29277212 29277519 -72103002 - L1MC4a LINE L1 -1429 6379 6060 2060 103 67 36 chr15 29277519 29277878 -72102643 - THE1C LTR MaLR 0 375 6 253 250 125 8 chr15 29277953 29278073 -72102448 - HAL1 LINE L1 -131 2376 2243 1758 154 44 14 chr15 29278841 29279134 -72101387 - AluJb SINE Alu -10 302 1 1742 104 0 0 chr15 29279625 29279847 -72100674 - AluSx SINE Alu -52 260 39 485 33 33 0 chr15 29279847 29279908 -72100613 - MER75B DNA T2_type -130 113 51 616 113 0 0 chr15 29281027 29281107 -72099414 - AluS SINE Alu -232 80 1 1007 111 0 20 chr15 29281526 29281679 -72098842 - AluSg/x SINE Alu -6 304 155 4625 158 46 14 chr15 29281680 29282586 -72097935 - L1PB4 LINE L1 -27 6129 5180 1629 163 0 51 chr15 29282623 29282917 -72097604 - AluJb SINE Alu -33 279 1 1157 120 0 0 chr15 29283004 29283162 -72097359 + AluSg SINE Alu 1 158 -152 2197 97 7 0 chr15 29284031 29284310 -72096211 + AluSq SINE Alu 1 281 -32 309 51 0 0 chr15 29284313 29284352 -72096169 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 659 241 142 0 chr15 29284352 29284564 -72095957 - MER112 DNA MER1_type -18 242 1 306 0 0 0 chr15 29284978 29285012 -72095509 + (CA)n Simple_repeat Simple_repeat 1 34 0 * 513 0 0 0 chr15 29285011 29285068 -72095453 + (GA)n Simple_repeat Simple_repeat 2 58 0 1959 152 0 0 chr15 29285163 29285446 -72095075 + AluSx SINE Alu 1 283 -29 1566 180 58 4 chr15 29285579 29285857 -72094664 + AluJo SINE Alu 1 293 -19 484 309 100 18 chr15 29286235 29286455 -72094066 + MIR SINE MIR 7 244 -18 227 352 14 0 chr15 29286473 29286544 -72093977 + MIR3 SINE MIR 108 179 -29 408 200 0 0 chr15 29286951 29287041 -72093480 + (TATATG)n Simple_repeat Simple_repeat 1 90 0 22 0 0 0 chr15 29287362 29287384 -72093137 + AT_rich Low_complexity Low_complexity 1 22 0 426 328 115 10 chr15 29287521 29287826 -72092695 + L1M4 LINE L1 3964 4300 -1846 358 246 70 25 chr15 29287887 29288086 -72092435 + L1M4 LINE L1 4398 4605 -1541 289 325 68 0 chr15 29288145 29288336 -72092185 + L1M4 LINE L1 4628 4831 -1315 2565 58 0 0 chr15 29288336 29288645 -72091876 + AluY SINE Alu 1 309 -2 1618 185 58 92 chr15 29288714 29288739 -72091782 + L1MC4 LINE L1 7524 7548 -494 2559 40 3 0 chr15 29288739 29289035 -72091486 + AluY SINE Alu 1 297 -14 1618 185 58 92 chr15 29289035 29289342 -72091179 + L1MC4 LINE L1 7548 7864 -178 1628 163 92 3 chr15 29289342 29289625 -72090896 + AluJb SINE Alu 1 308 -4 1618 185 58 92 chr15 29289625 29289707 -72090814 + L1MC4 LINE L1 7864 7947 -95 195 42 0 0 chr15 29289707 29289731 -72090790 + (CA)n Simple_repeat Simple_repeat 1 24 0 1618 185 58 92 chr15 29289731 29289844 -72090677 + L1MC4 LINE L1 7947 8035 -7 1801 152 3 36 chr15 29291022 29291325 -72089196 - AluJo SINE Alu -18 294 2 2509 66 0 0 chr15 29295274 29295577 -72084944 - AluY SINE Alu -8 303 1 296 247 62 102 chr15 29296159 29296531 -72083990 - HAL1b LINE L1 0 6121 1195 1403 43 0 0 chr15 29296821 29296984 -72083537 - AluY SINE Alu -15 296 134 1933 118 26 4 chr15 29296984 29297256 -72083265 - AluSq SINE Alu -33 280 3 181 247 86 65 chr15 29297436 29297529 -72082992 + L2 LINE L2 2312 2406 -908 318 309 129 72 chr15 29297882 29298299 -72082222 - L2 LINE L2 -15 3257 2817 2299 116 0 10 chr15 29298655 29298966 -72081555 + AluSx SINE Alu 1 308 -4 2355 139 118 44 chr15 29299020 29299257 -72081264 - LTR54 LTR ERV1 0 510 292 405 0 0 0 chr15 29299257 29299302 -72081219 + (TG)n Simple_repeat Simple_repeat 2 46 0 2355 139 118 44 chr15 29299302 29299539 -72080982 - LTR54 LTR ERV1 -218 292 1 1930 159 41 36 chr15 29299543 29299907 -72080614 + MLT2D LTR ERVL 1 366 -48 840 189 7 0 chr15 29300055 29300208 -72080313 - FRAM SINE Alu -23 153 1 578 259 56 0 chr15 29300211 29300373 -72080148 + MIR SINE MIR 76 246 -16 2121 116 0 41 chr15 29300416 29300735 -72079786 + AluSc SINE Alu 1 306 -3 1247 158 0 87 chr15 29300851 29301104 -72079417 - AluJo SINE Alu -58 254 24 401 303 23 0 chr15 29301276 29301408 -72079113 - MER103 DNA DNA -1 165 31 356 325 69 38 chr15 29301498 29301658 -72078863 + MIR3 SINE MIR 21 185 -23 569 156 0 33 chr15 29301845 29301935 -72078586 + AluS SINE Alu 2 88 -225 207 307 0 40 chr15 29301939 29302014 -72078507 - MER5A DNA MER1_type -7 182 111 2314 81 0 3 chr15 29302017 29302343 -72078178 - AluY SINE Alu 0 325 1 1936 137 3 23 chr15 29302347 29302646 -72077875 - AluSx SINE Alu -19 293 1 2409 86 3 0 chr15 29302649 29302952 -72077569 - AluSp SINE Alu -9 304 1 24683 163 16 22 chr15 29303002 29304519 -72076002 - L1PA11 LINE L1 -3 7609 6084 234 0 0 0 chr15 29304519 29304545 -72075976 + (TA)n Simple_repeat Simple_repeat 2 27 0 2266 123 0 0 chr15 29304545 29304847 -72075674 - AluSx SINE Alu -10 302 1 24683 163 16 22 chr15 29304847 29307678 -72072843 - L1PA11 LINE L1 -1527 6085 2488 2254 120 0 0 chr15 29307678 29307979 -72072542 + AluSx SINE Alu 1 301 -11 24683 163 16 22 chr15 29307979 29309692 -72070829 - L1PA11 LINE L1 -5124 2488 766 961 158 67 6 chr15 29309692 29309815 -72070706 + AluJb SINE Alu 1 138 -174 255 31 0 0 chr15 29309815 29309847 -72070674 + (CA)n Simple_repeat Simple_repeat 2 33 0 961 158 67 6 chr15 29309847 29309888 -72070633 + AluJb SINE Alu 138 175 -137 779 157 0 0 chr15 29309995 29310133 -72070388 + AluSg/x SINE Alu 173 310 0 3238 204 31 51 chr15 29310133 29310496 -72070025 - L1PA11 LINE L1 -6809 772 403 2584 51 0 6 chr15 29310496 29310808 -72069713 + AluY SINE Alu 2 311 0 3238 204 31 51 chr15 29310808 29311227 -72069294 - L1PA11 LINE L1 -7178 403 6 249 305 0 0 chr15 29311242 29311301 -72069220 - MER5A DNA MER1_type -122 67 9 378 272 126 58 chr15 29312294 29312555 -72067966 + L3b LINE CR1 1268 1546 -37 23 33 0 0 chr15 29312785 29312815 -72067706 + AT_rich Low_complexity Low_complexity 1 30 0 2383 60 7 0 chr15 29312819 29313103 -72067418 - AluY SINE Alu -25 286 1 2680 239 25 16 chr15 29313434 29314117 -72066404 - L2 LINE L2 -1272 2042 1354 2532 58 0 0 chr15 29314611 29314906 -72065615 - AluY SINE Alu -16 295 1 513 150 230 0 chr15 29314982 29315082 -72065439 - MER5A DNA MER1_type -15 174 52 1714 154 7 11 chr15 29315223 29315509 -72065012 - AluJo SINE Alu -27 285 1 180 212 192 20 chr15 29316008 29316107 -72064414 - L3 LINE CR1 -10 1567 1452 2247 87 3 20 chr15 29316235 29316533 -72063988 + AluSq SINE Alu 1 293 -20 290 203 68 0 chr15 29316797 29316856 -72063665 + MIR SINE MIR 48 110 -152 253 184 35 23 chr15 29316888 29316981 -72063540 + (TTATA)n Simple_repeat Simple_repeat 1 94 0 341 149 170 53 chr15 29317675 29317769 -72062752 - L2 LINE L2 0 3313 3209 22 56 0 0 chr15 29318032 29318068 -72062453 + GC_rich Low_complexity Low_complexity 1 36 0 382 246 110 81 chr15 29318201 29318294 -72062227 + L1M2 LINE L1 446 535 -6314 195 114 0 0 chr15 29318294 29318329 -72062192 + (CCG)n Simple_repeat Simple_repeat 2 36 0 382 246 110 81 chr15 29318329 29318507 -72062014 + L1M2 LINE L1 535 725 -6124 195 42 0 0 chr15 29318596 29318620 -72061901 + (CGGGG)n Simple_repeat Simple_repeat 3 26 0 576 258 60 12 chr15 29319149 29319316 -72061205 - MIR SINE MIR -73 189 15 529 334 9 74 chr15 29319508 29319831 -72060690 - L2 LINE L2 -24 3248 2947 590 262 67 0 chr15 29319875 29320039 -72060482 - MIR SINE MIR -10 252 78 1295 189 102 0 chr15 29320041 29320306 -72060215 + AluJb SINE Alu 1 292 -20 285 182 0 0 chr15 29320308 29320352 -72060169 - MSTC LTR MaLR -384 44 1 1118 191 48 9 chr15 29320466 29320676 -72059845 - MER20 DNA MER1_type 0 219 2 1001 261 42 8 chr15 29321056 29321294 -72059227 - MIR SINE MIR -8 254 9 2545 66 0 7 chr15 29321790 29322095 -72058426 - AluSp SINE Alu -9 304 2 688 155 218 0 chr15 29322141 29322283 -72058238 + MER5A DNA MER1_type 2 174 -15 387 239 162 74 chr15 29322741 29323118 -72057403 + L1MC5 LINE L1 7533 7942 -19 26 0 0 0 chr15 29323158 29323184 -72057337 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr15 29323195 29323225 -72057296 + AT_rich Low_complexity Low_complexity 1 30 0 288 0 0 0 chr15 29323584 29323616 -72056905 + (A)n Simple_repeat Simple_repeat 1 32 0 33 66 0 0 chr15 29326112 29326173 -72054348 + AT_rich Low_complexity Low_complexity 1 61 0 404 19 0 19 chr15 29327994 29328048 -72052473 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 24 32 0 0 chr15 29328103 29328134 -72052387 + AT_rich Low_complexity Low_complexity 1 31 0 809 138 0 9 chr15 29329077 29329193 -72051328 + AluJ SINE Alu 22 136 -176 2169 123 3 0 chr15 29330187 29330487 -72050034 + AluSq SINE Alu 1 301 -12 2268 109 7 0 chr15 29331146 29331449 -72049072 + AluSg SINE Alu 1 305 -5 22 0 0 0 chr15 29332165 29332187 -72048334 + AT_rich Low_complexity Low_complexity 1 22 0 860 199 23 0 chr15 29333292 29333463 -72047058 + AluJ SINE Alu 137 311 -1 404 128 13 0 chr15 29333495 29333573 -72046948 + GA-rich Low_complexity Low_complexity 4 82 0 2063 128 3 0 chr15 29333882 29334203 -72046318 + AluSx SINE Alu 1 322 0 1423 169 139 0 chr15 29334741 29335008 -72045513 + AluJb SINE Alu 1 304 -8 345 290 73 8 chr15 29335056 29335180 -72045341 + MIR3 SINE MIR 67 198 -10 335 339 99 12 chr15 29337141 29337312 -72043209 + MIR SINE MIR 25 210 -52 2045 103 0 97 chr15 29337343 29337674 -72042847 - AluSx SINE Alu -12 300 2 366 23 0 0 chr15 29338637 29338680 -72041841 + (TG)n Simple_repeat Simple_repeat 2 44 0 233 178 0 0 chr15 29338695 29338740 -72041781 - LTR66 LTR ERVL -172 438 394 229 178 0 0 chr15 29338702 29338747 -72041774 + LTR66 LTR ERVL 394 438 -172 * 253 200 0 0 chr15 29339074 29339119 -72041402 + L1MD3 LINE L1 7209 7253 -742 424 213 111 0 chr15 29339132 29339240 -72041281 + MLT1F1 LTR MaLR 6 125 -442 2436 182 70 41 chr15 29339240 29339807 -72040714 + L1MD3 LINE L1 7404 7987 -8 2253 105 3 0 chr15 29339916 29340210 -72040311 - AluSp SINE Alu -18 295 1 965 202 58 123 chr15 29340647 29341093 -72039428 - LTR40c LTR ERVL -5 460 44 214 306 65 0 chr15 29341137 29341199 -72039322 + L2 LINE L2 3169 3234 -38 2602 48 0 10 chr15 29341603 29341917 -72038604 - AluY SINE Alu 0 311 1 2381 76 0 10 chr15 29342163 29342465 -72038056 - AluSc SINE Alu -10 299 1 484 330 48 22 chr15 29343796 29344023 -72036498 + MIR SINE MIR 1 233 -29 205 305 263 34 chr15 29344246 29344603 -72035918 - L3b LINE CR1 -9 1574 1136 309 267 67 7 chr15 29345251 29345386 -72035135 + HAL1 LINE L1 2 144 -2363 2086 93 11 4 chr15 29345432 29345741 -72034780 + AluSx SINE Alu 1 311 0 1158 134 0 0 chr15 29345741 29345913 -72034608 + AluSg/x SINE Alu 134 305 -7 851 125 0 0 chr15 29346880 29347008 -72033513 + L1MA2 LINE L1 6172 6299 -5 2259 78 0 13 chr15 29347613 29347919 -72032602 + AluY SINE Alu 1 302 -9 247 198 83 42 chr15 29349353 29349449 -72031072 - L1ME3A LINE L1 -223 5947 5848 284 239 178 68 chr15 29349452 29349567 -72030954 - L1ME3A LINE L1 -393 5769 5668 3656 121 10 2 chr15 29349567 29350088 -72030433 + MER1A DNA MER1_type 3 527 0 284 239 178 68 chr15 29350088 29350164 -72030357 - L1ME3A LINE L1 -494 5668 5564 33 0 0 0 chr15 29350453 29350486 -72030035 + AT_rich Low_complexity Low_complexity 1 33 0 1935 149 0 16 chr15 29350488 29350797 -72029724 + AluJo SINE Alu 1 304 -8 1003 136 37 61 chr15 29350838 29351052 -72029469 - MER2 DNA MER2_type -135 210 2 408 130 0 0 chr15 29351070 29351139 -72029382 + L1P LINE L1 5105 5173 -973 6727 148 16 28 chr15 29351253 29352554 -72027967 + L1P LINE L1 41 1326 -4820 231 235 129 8 chr15 29352590 29352722 -72027799 + L1M4 LINE L1 5016 5163 -983 277 179 104 9 chr15 29352844 29352950 -72027571 + L1M LINE L1 5313 5428 -2380 2589 240 114 120 chr15 29352951 29353850 -72026671 + L2 LINE L2 749 1777 -1537 701 176 21 28 chr15 29353850 29353992 -72026529 + FLAM_C SINE Alu 1 141 -2 2589 240 114 120 chr15 29353992 29354532 -72025989 + L2 LINE L2 1777 2319 -995 571 260 153 0 chr15 29354532 29354755 -72025766 + LTR33 LTR ERVL 1 257 -264 293 303 72 7 chr15 29354811 29354963 -72025558 + LTR33 LTR ERVL 355 516 -5 1600 242 110 50 chr15 29355012 29355884 -72024637 + L2 LINE L2 2385 3308 -5 2413 86 0 3 chr15 29356526 29356828 -72023693 - AluSq SINE Alu -12 301 1 1586 188 53 35 chr15 29357497 29357874 -72022647 - L1MD2 LINE L1 -19 6340 5957 1025 207 56 64 chr15 29359812 29360328 -72020193 + L1MC5 LINE L1 7406 7917 -44 271 255 81 20 chr15 29360508 29360657 -72019864 - L1ME4a LINE L1 -18 6103 5946 309 266 133 0 chr15 29360793 29360906 -72019615 - L1MC4 LINE L1 -371 7671 7544 308 326 83 45 chr15 29360994 29361282 -72019239 - L1MC4a LINE L1 -397 7411 7113 2393 85 0 0 chr15 29361536 29361831 -72018690 + AluY SINE Alu 1 295 -16 1146 154 0 0 chr15 29362915 29363180 -72017341 - MLT1C-int LTR MaLR -1172 199 7 1729 200 90 18 chr15 29363180 29363615 -72016906 - MLT1C LTR MaLR -1 466 1 1828 167 3 7 chr15 29363645 29363944 -72016577 + AluJo SINE Alu 1 298 -14 312 204 70 56 chr15 29363953 29363991 -72016530 + L1M4c LINE L1 1318 1354 -5030 2287 106 3 0 chr15 29363991 29364294 -72016227 - AluY SINE Alu -7 304 1 312 204 70 56 chr15 29364294 29364397 -72016124 + L1M4c LINE L1 1354 1461 -4923 194 174 22 0 chr15 29364436 29364482 -72016039 + (CA)n Simple_repeat Simple_repeat 2 48 0 760 279 18 30 chr15 29364489 29364826 -72015695 + L1M4c LINE L1 1460 1792 -4592 1008 214 38 51 chr15 29364980 29365211 -72015310 + L1M4c LINE L1 2437 2662 -3720 1453 160 116 29 chr15 29365211 29365486 -72015035 + AluJo SINE Alu 1 299 -13 1008 214 38 51 chr15 29365486 29365647 -72014874 + L1M4c LINE L1 2662 2824 -3558 21 0 0 0 chr15 29365827 29365848 -72014673 + AT_rich Low_complexity Low_complexity 1 21 0 992 175 0 0 chr15 29366551 29366705 -72013816 + FRAM SINE Alu 1 154 -22 2364 107 0 0 chr15 29368559 29368867 -72011654 - AluSx SINE Alu -4 308 1 295 326 131 49 chr15 29369035 29369363 -72011158 - L2 LINE L2 -3 3269 2915 2241 115 0 16 chr15 29369586 29369899 -72010622 + AluSq SINE Alu 1 308 -5 2493 62 3 0 chr15 29370704 29371008 -72009513 + AluY SINE Alu 1 305 -6 1482 62 6 0 chr15 29371497 29371673 -72008848 + AluSp SINE Alu 1 177 -136 568 115 0 0 chr15 29371673 29371760 -72008761 + AluSp SINE Alu 220 306 -7 1646 166 17 34 chr15 29372355 29372651 -72007870 + AluJb SINE Alu 7 297 -15 2202 130 10 0 chr15 29372981 29373289 -72007232 - AluSx SINE Alu -1 311 1 5784 121 127 13 chr15 29373339 29373772 -72006749 + Tigger3b DNA MER2_type 2 384 -2644 5689 68 8 115 chr15 29373772 29374697 -72005824 - LTR12 LTR ERV1 0 826 1 5784 121 127 13 chr15 29374697 29375035 -72005486 + Tigger3b DNA MER2_type 384 682 -2346 197 33 33 0 chr15 29375035 29375065 -72005456 + (CTCA)n Simple_repeat Simple_repeat 1 31 0 5784 121 127 13 chr15 29375065 29375395 -72005126 + Tigger3b DNA MER2_type 682 1230 -1 2504 73 0 0 chr15 29375540 29375840 -72004681 + AluY SINE Alu 1 300 -11 234 224 0 0 chr15 29376734 29376783 -72003738 - Alu SINE Alu -119 180 132 1796 106 8 4 chr15 29376789 29377045 -72003476 - AluSp SINE Alu -7 306 50 422 165 78 52 chr15 29378952 29379067 -72001454 - LTR33 LTR ERVL -376 145 28 2247 101 0 14 chr15 29379070 29379367 -72001154 + AluSc SINE Alu 1 293 -16 23 0 0 0 chr15 29379412 29379435 -72001086 + AT_rich Low_complexity Low_complexity 1 23 0 2084 98 3 73 chr15 29379834 29380161 -72000360 + AluSx SINE Alu 1 304 -8 2270 103 0 0 chr15 29380658 29380948 -71999573 + AluSx SINE Alu 1 290 -22 2424 91 0 3 chr15 29380959 29381267 -71999254 + AluSq SINE Alu 1 307 -6 1197 265 75 16 chr15 29381267 29381720 -71998801 + L1MC4a LINE L1 5434 5913 -1895 27 96 0 0 chr15 29381783 29381866 -71998655 + AT_rich Low_complexity Low_complexity 1 83 0 201 74 0 0 chr15 29381896 29381923 -71998598 + (TA)n Simple_repeat Simple_repeat 1 27 0 1010 131 16 60 chr15 29381948 29382131 -71998390 - FAM SINE Alu 0 175 1 604 216 39 64 chr15 29382353 29382474 -71998047 - MER90 LTR ERV1 -13 562 446 2318 91 0 14 chr15 29382474 29382771 -71997750 - AluSg SINE Alu -17 293 1 604 216 39 64 chr15 29382771 29382853 -71997668 - MER90 LTR ERV1 -129 446 364 449 258 37 37 chr15 29382902 29383065 -71997456 - LTR65 LTR ERV1 -506 163 1 198 0 0 0 chr15 29383234 29383256 -71997265 + (TG)n Simple_repeat Simple_repeat 2 23 0 225 250 208 14 chr15 29383558 29383630 -71996891 + MIR3 SINE MIR 88 173 -35 1001 58 0 7 chr15 29383846 29383983 -71996538 - MER75 DNA T2_type 0 514 379 702 137 0 0 chr15 29383984 29384086 -71996435 + AluSp SINE Alu 2 103 -210 249 118 0 0 chr15 29384186 29384220 -71996301 - AluSx SINE Alu -48 253 220 1580 141 4 16 chr15 29384220 29384326 -71996195 - AluSx SINE Alu -73 239 133 2490 34 0 10 chr15 29384326 29384621 -71995900 - AluY SINE Alu -18 293 2 1580 141 4 16 chr15 29384621 29384756 -71995765 - AluSx SINE Alu -179 133 1 232 310 44 62 chr15 29385089 29385202 -71995319 - MIR3 SINE MIR -87 121 11 1205 216 52 3 chr15 29385713 29386000 -71994521 - L1ME1 LINE L1 -83 6083 5783 740 189 0 0 chr15 29386050 29386182 -71994339 - MER94 DNA DNA -2 132 1 211 309 39 15 chr15 29386340 29386429 -71994092 - MIR SINE MIR -56 152 63 504 320 13 13 chr15 29386479 29386629 -71993892 + MIR SINE MIR 2 151 -111 338 264 0 33 chr15 29386755 29386846 -71993675 + L1MC4 LINE L1 6616 6703 -1339 273 239 23 0 chr15 29386874 29386962 -71993559 + L1MC4 LINE L1 6614 6703 -1339 247 239 0 22 chr15 29386968 29387060 -71993461 + L1MC4 LINE L1 6614 6703 -1339 327 150 0 0 chr15 29387064 29387124 -71993397 + (TA)n Simple_repeat Simple_repeat 2 61 0 32 0 0 0 chr15 29387152 29387184 -71993337 + AT_rich Low_complexity Low_complexity 1 32 0 252 114 0 0 chr15 29387217 29387261 -71993260 - U5 snRNA snRNA -72 44 1 921 89 8 0 chr15 29387763 29387887 -71992634 - FLAM_C SINE Alu -8 125 1 241 291 148 5 chr15 29388810 29389020 -71991501 - L1ME4a LINE L1 -2 6119 5880 665 235 8 0 chr15 29389035 29389167 -71991354 + FLAM_A SINE Alu 1 133 0 2123 186 26 0 chr15 29389177 29389563 -71990958 + MSTD LTR MaLR 1 396 0 2513 70 3 0 chr15 29389890 29390192 -71990329 - AluY SINE Alu -8 303 1 182 224 119 30 chr15 29390531 29390598 -71989923 + MIR SINE MIR 46 118 -90 1777 152 42 3 chr15 29391023 29391306 -71989215 - AluSq SINE Alu -19 294 1 2403 184 42 60 chr15 29391920 29392279 -71988242 - L1MB7 LINE L1 -13 6171 5826 2218 98 0 10 chr15 29392279 29392576 -71987945 - AluSq SINE Alu -19 294 1 2403 184 42 60 chr15 29392576 29392818 -71987703 - L1MB7 LINE L1 -358 5826 5581 566 87 0 0 chr15 29392823 29392892 -71987629 - AluSg/x SINE Alu -49 260 192 656 185 25 115 chr15 29392906 29393106 -71987415 - L1MB7 LINE L1 -609 5575 5394 1193 156 37 66 chr15 29393244 29393487 -71987034 + MER46A DNA MER2_type 1 236 0 402 21 0 0 chr15 29393508 29393555 -71986966 + (TG)n Simple_repeat Simple_repeat 2 48 0 734 172 8 37 chr15 29393568 29393702 -71986819 - FLAM_C SINE Alu -12 131 2 2154 59 7 11 chr15 29393833 29394106 -71986415 - AluY SINE Alu -39 272 1 1966 135 7 0 chr15 29394220 29394502 -71986019 - AluJb SINE Alu -28 284 1 3556 121 18 2 chr15 29394828 29395317 -71985204 - LOR1a LTR ERV1 0 497 1 655 101 0 0 chr15 29395320 29395409 -71985112 - LOR1a-int LTR ERV1 -2 8118 8030 * 1769 111 0 26 chr15 29395408 29395435 -71985086 - LOR1-int LTR ERV1 -2056 6064 6038 8515 111 25 38 chr15 29395435 29396729 -71983792 + MER52C LTR ERV1 1 1278 0 1769 111 0 26 chr15 29396729 29396972 -71983549 - LOR1-int LTR ERV1 -2082 6038 5801 * 7407 99 55 31 chr15 29396962 29397090 -71983431 - LOR1-int LTR ERV1 -2596 5524 5400 2180 136 0 0 chr15 29397090 29397398 -71983123 + AluSx SINE Alu 1 308 -4 7407 99 55 31 chr15 29397398 29397507 -71983014 - LOR1-int LTR ERV1 -2720 5400 5295 2114 149 0 0 chr15 29397507 29397809 -71982712 + AluSx SINE Alu 1 302 -10 7407 99 55 31 chr15 29397809 29398274 -71982247 - LOR1-int LTR ERV1 -2825 5295 4842 2039 99 28 0 chr15 29398274 29398557 -71981964 - AluSx SINE Alu -21 291 1 7407 99 55 31 chr15 29398557 29399061 -71981460 - LOR1-int LTR ERV1 -3278 4842 4288 2593 50 0 0 chr15 29399178 29399477 -71981044 - AluY SINE Alu -12 299 1 960 223 45 35 chr15 29399873 29400315 -71980206 + L1MC5 LINE L1 7244 7598 -363 1828 168 73 48 chr15 29400321 29400388 -71980133 - L1ME1 LINE L1 -192 5974 5910 306 0 0 0 chr15 29400388 29400422 -71980099 + (TA)n Simple_repeat Simple_repeat 2 35 0 1828 168 73 48 chr15 29400422 29400795 -71979726 - L1ME1 LINE L1 -256 5910 5523 416 194 173 68 chr15 29400811 29400899 -71979622 + L1MC5 LINE L1 7649 7726 -235 2467 68 0 23 chr15 29400899 29401207 -71979314 + AluY SINE Alu 1 301 -10 416 194 173 68 chr15 29401207 29401355 -71979166 + L1MC5 LINE L1 7726 7910 -51 2159 112 0 3 chr15 29401356 29401660 -71978861 + AluY SINE Alu 1 303 -8 2736 32 0 0 chr15 29402171 29402481 -71978040 + AluY SINE Alu 2 311 0 2021 143 0 3 chr15 29402486 29402779 -71977742 + AluSx SINE Alu 1 292 -20 2017 158 0 0 chr15 29402804 29403115 -71977406 + AluJb SINE Alu 1 311 -1 431 164 0 0 chr15 29403167 29403240 -71977281 - Alu SINE Alu -3 308 236 190 300 0 0 chr15 29403699 29403749 -71976772 - L2 LINE L2 -2 3270 3221 228 296 14 120 chr15 29403786 29403928 -71976593 - MER5A DNA MER1_type -28 161 35 761 228 81 129 chr15 29404326 29404506 -71976015 + HAL1 LINE L1 1 159 -2348 2063 102 11 0 chr15 29404506 29404789 -71975732 + AluSx SINE Alu 4 289 -23 761 228 81 129 chr15 29404789 29404942 -71975579 + HAL1 LINE L1 159 318 -2189 38446 89 10 7 chr15 29404953 29411080 -71969441 + L1PA6 LINE L1 11 6154 0 742 277 204 10 chr15 29411090 29411242 -71969279 + HAL1 LINE L1 307 428 -2079 2236 125 0 0 chr15 29411242 29411545 -71968976 - AluSx SINE Alu -9 303 1 742 277 204 10 chr15 29411545 29411706 -71968815 + HAL1 LINE L1 428 681 -1826 480 81 0 0 chr15 29411711 29411785 -71968736 + (CA)n Simple_repeat Simple_repeat 2 75 0 367 217 59 20 chr15 29411832 29411948 -71968573 + L1ME1 LINE L1 6050 6184 0 737 230 209 24 chr15 29411956 29412330 -71968191 + HAL1 LINE L1 995 1437 -1070 515 198 144 0 chr15 29412399 29412510 -71968011 + HAL1 LINE L1 1540 1666 -841 502 239 130 24 chr15 29412530 29412777 -71967744 + HAL1 LINE L1 1721 1993 -514 * 2641 142 106 2 chr15 29412764 29412950 -71967571 + L1MDa LINE L1 1822 1987 -4553 206 61 0 30 chr15 29412950 29412983 -71967538 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2641 142 106 2 chr15 29412983 29413316 -71967205 + L1MDa LINE L1 1987 2395 -4145 1904 137 3 20 chr15 29413769 29414069 -71966452 + AluSx SINE Alu 5 299 -13 2123 131 0 0 chr15 29414619 29414917 -71965604 + AluSq SINE Alu 1 298 -15 1784 167 13 26 chr15 29415049 29415360 -71965161 + AluJo SINE Alu 1 307 -5 2296 126 39 39 chr15 29415448 29415812 -71964709 - THE1B LTR MaLR 0 364 1 2416 160 79 27 chr15 29415985 29416503 -71964018 + LTR10A LTR ERV1 1 545 -64 5209 120 21 12 chr15 29416518 29417328 -71963193 + LTR10A-int LTR ERV1 3 819 -5830 * 17012 167 28 37 chr15 29417323 29422734 -71957787 + LTR10A-int LTR ERV1 1396 6649 0 2304 175 95 12 chr15 29422734 29423237 -71957284 + LTR10A LTR ERV1 1 545 -64 322 281 60 90 chr15 29423409 29423670 -71956851 - MIR SINE MIR 0 262 8 1836 214 63 34 chr15 29423670 29424106 -71956415 + Charlie1b DNA MER1_type 5 459 -2302 2111 117 0 0 chr15 29424106 29424387 -71956134 + AluSc SINE Alu 13 293 -16 1836 214 63 34 chr15 29424387 29424454 -71956067 + Charlie1b DNA MER1_type 459 523 0 21 0 0 0 chr15 29424514 29424535 -71955986 + AT_rich Low_complexity Low_complexity 1 21 0 2003 92 67 11 chr15 29425478 29425761 -71954760 + AluSg SINE Alu 1 299 -11 1755 113 4 8 chr15 29425772 29426020 -71954501 + AluSx SINE Alu 52 298 -14 514 109 0 0 chr15 29426191 29426255 -71954266 + AluSq/x SINE Alu 88 151 -162 1876 124 34 0 chr15 29426256 29426523 -71953998 + AluSg SINE Alu 35 310 0 5130 112 38 30 chr15 29426523 29427346 -71953175 + L1PA15 LINE L1 5319 6147 -18 1808 169 0 16 chr15 29427347 29427654 -71952867 - AluJb SINE Alu -10 302 1 673 206 0 57 chr15 29428421 29428562 -71951959 - FLAM_A SINE Alu 0 133 1 2016 136 3 3 chr15 29428591 29428886 -71951635 + AluSx SINE Alu 1 295 -17 23 0 0 0 chr15 29429316 29429339 -71951182 + AT_rich Low_complexity Low_complexity 1 23 0 1090 218 13 21 chr15 29429718 29429957 -71950564 - AluJo SINE Alu -21 291 55 1345 198 61 27 chr15 29430164 29430457 -71950064 + AluJo SINE Alu 1 303 -9 529 226 139 83 chr15 29430495 29430796 -71949725 + L2 LINE L2 2996 3313 0 2095 110 13 13 chr15 29432067 29432368 -71948153 + AluJb SINE Alu 1 301 -11 35 54 0 0 chr15 29432935 29432991 -71947530 + AT_rich Low_complexity Low_complexity 1 56 0 2290 103 17 3 chr15 29433449 29433750 -71946771 + AluSx SINE Alu 1 305 -7 29 28 0 0 chr15 29433870 29433906 -71946615 + AT_rich Low_complexity Low_complexity 1 36 0 2371 71 3 59 chr15 29434324 29434648 -71945873 - AluY SINE Alu -5 306 1 2269 86 10 10 chr15 29434864 29435165 -71945356 - AluSq SINE Alu -12 301 1 2272 109 0 0 chr15 29435463 29435757 -71944764 + AluSq SINE Alu 1 294 -19 2160 101 7 3 chr15 29435759 29436055 -71944466 + AluSq SINE Alu 1 297 -16 1712 45 5 0 chr15 29437396 29437595 -71942926 - L1PA4 LINE L1 0 6155 5956 180 152 0 0 chr15 29438127 29438160 -71942361 + T-rich Low_complexity Low_complexity 1 33 0 361 243 0 0 chr15 29438170 29438240 -71942281 - FRAM/FAM SINE Alu -97 69 1 180 0 0 0 chr15 29438488 29438508 -71942013 + (T)n Simple_repeat Simple_repeat 1 20 0 2241 99 7 0 chr15 29439085 29439379 -71941142 - AluSq SINE Alu -17 296 1 806 182 52 19 chr15 29440525 29440679 -71939842 + FRAM SINE Alu 1 159 -17 2139 123 0 7 chr15 29441498 29441806 -71938715 - AluSg SINE Alu -4 306 1 965 173 9 28 chr15 29441889 29442103 -71938418 + L1MA3 LINE L1 6096 6305 0 248 115 49 49 chr15 29442257 29442318 -71938203 + L1MC/D LINE L1 5747 5807 -2001 2315 89 3 10 chr15 29442325 29442638 -71937883 + AluSp SINE Alu 1 311 -2 195 278 28 69 chr15 29443317 29443389 -71937132 + MIR SINE MIR 45 113 -95 668 287 139 35 chr15 29443717 29444264 -71936257 - L1MEd LINE L1 -5084 1035 432 293 133 56 100 chr15 29444459 29444549 -71935972 - L1MEd LINE L1 -5967 152 67 2055 129 4 0 chr15 29444634 29444912 -71935609 + AluSx SINE Alu 1 279 -33 288 0 0 0 chr15 29444912 29444944 -71935577 + (CA)n Simple_repeat Simple_repeat 1 32 0 682 153 0 9 chr15 29445231 29445342 -71935179 + AluSc SINE Alu 188 297 -12 340 282 43 43 chr15 29445464 29445581 -71934940 - L2 LINE L2 0 3272 3156 2288 95 3 3 chr15 29449290 29449585 -71930936 + AluSp SINE Alu 1 295 -18 2287 87 7 7 chr15 29449907 29450206 -71930315 + AluSc SINE Alu 1 299 -10 1708 106 109 4 chr15 29450675 29450940 -71929581 + AluSc SINE Alu 2 294 -15 2175 67 10 20 chr15 29450995 29451293 -71929228 - AluY SINE Alu -1 310 16 1338 54 12 12 chr15 29451396 29451563 -71928958 + AluSc SINE Alu 132 298 -11 227 125 0 0 chr15 29451566 29451598 -71928923 - Tigger5 DNA MER2_type -2290 33 2 264 226 0 0 chr15 29451871 29451933 -71928588 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 282 85 0 0 chr15 29451933 29451980 -71928541 - Alu SINE Alu 0 302 256 814 206 19 31 chr15 29451980 29452140 -71928381 + FAM SINE Alu 1 158 -17 2029 136 0 17 chr15 29452232 29452369 -71928152 + AluSx SINE Alu 1 139 -173 2175 102 20 3 chr15 29452369 29452662 -71927859 + AluSg SINE Alu 1 298 -12 2029 136 0 17 chr15 29452662 29452825 -71927696 + AluSx SINE Alu 139 296 -16 242 244 44 0 chr15 29452888 29452978 -71927543 + L1MC/D LINE L1 5744 5837 -1971 2325 83 0 3 chr15 29454278 29454579 -71925942 - AluSg SINE Alu -10 300 1 21 0 0 0 chr15 29454904 29454925 -71925596 + AT_rich Low_complexity Low_complexity 1 21 0 1725 106 0 4 chr15 29455004 29455231 -71925290 + AluSc SINE Alu 70 295 -14 233 185 19 0 chr15 29455305 29455359 -71925162 + LTR33 LTR ERVL 5 59 -462 521 268 56 20 chr15 29455489 29455687 -71924834 + LTR33 LTR ERVL 313 517 -4 2164 112 0 40 chr15 29455692 29456015 -71924506 - AluSx SINE Alu -2 310 1 316 272 67 25 chr15 29456209 29456448 -71924073 + L1MC5 LINE L1 7537 7785 -176 252 138 69 35 chr15 29456591 29456649 -71923872 + L1ME LINE L1 5731 5790 -331 1721 181 14 0 chr15 29456854 29457146 -71923375 - AluJo SINE Alu -14 298 3 1784 184 0 0 chr15 29457310 29457604 -71922917 + AluJo SINE Alu 6 299 -13 1228 109 18 123 chr15 29459534 29459819 -71920702 + MER75 DNA T2_type 5 259 -255 2162 101 0 24 chr15 29459921 29460219 -71920302 - AluSc SINE Alu -18 291 1 3231 135 40 47 chr15 29460219 29460413 -71920108 - L1MB2 LINE L1 -38 6133 5939 2166 122 0 0 chr15 29460413 29460701 -71919820 - AluSg SINE Alu -20 290 3 3231 135 40 47 chr15 29460701 29461149 -71919372 - L1MB2 LINE L1 -232 5939 5495 1605 203 10 13 chr15 29461150 29461460 -71919061 - AluJb SINE Alu -3 309 1 837 221 25 63 chr15 29461464 29461709 -71918812 - L1MB2 LINE L1 -819 5327 5095 2070 132 3 0 chr15 29461709 29462019 -71918502 - AluSx SINE Alu 0 312 2 837 221 25 63 chr15 29462019 29462089 -71918432 - L1MB2 LINE L1 -1051 5095 5024 2173 191 161 133 chr15 29462224 29463215 -71917306 + LTR28 LTR ERV1 1 1019 -1 2169 123 0 10 chr15 29463251 29463559 -71916962 - AluSx SINE Alu -7 305 1 2316 118 0 0 chr15 29463717 29464023 -71916498 - AluSq SINE Alu -7 306 1 909 193 114 31 chr15 29464341 29464595 -71915926 + ORSL DNA AcHobo 1 275 0 2144 114 3 7 chr15 29464794 29465102 -71915419 - AluSx SINE Alu -5 307 1 1910 118 76 0 chr15 29466107 29466396 -71914125 - AluSx SINE Alu -1 311 1 2103 119 3 0 chr15 29466746 29467039 -71913482 - AluSx SINE Alu -18 294 1 266 319 169 19 chr15 29467228 29467388 -71913133 + L3 LINE CR1 1323 1506 -71 6564 116 23 16 chr15 29467601 29467757 -71912764 - L1MA2 LINE L1 0 6304 6150 2283 80 7 10 chr15 29467757 29468059 -71912462 - AluSx SINE Alu -11 301 1 6564 116 23 16 chr15 29468059 29469141 -71911380 - L1MA2 LINE L1 -154 6150 5076 2007 150 0 6 chr15 29469141 29469454 -71911067 - AluJb SINE Alu -1 311 1 6564 116 23 16 chr15 29469454 29469541 -71910980 - L1MA2 LINE L1 -1228 5076 4991 2257 155 98 26 chr15 29469541 29469998 -71910523 + LTR2B LTR ERV1 1 490 0 6564 116 23 16 chr15 29469998 29470351 -71910170 - L1MA2 LINE L1 -1313 4991 4620 550 270 11 11 chr15 29470584 29470762 -71909759 - MER5B DNA MER1_type 0 178 1 686 287 33 29 chr15 29470941 29471185 -71909336 + MIR SINE MIR 6 250 -12 2269 98 17 0 chr15 29471193 29471489 -71909032 + AluSq SINE Alu 1 301 -12 252 300 154 89 chr15 29472788 29473171 -71907350 - L2 LINE L2 0 3272 2865 1625 120 74 35 chr15 29473283 29473567 -71906954 + AluJo SINE Alu 1 295 -17 1231 160 78 14 chr15 29474846 29475065 -71905456 - AluJo SINE Alu -74 238 6 4128 171 55 30 chr15 29475090 29476129 -71904392 - L1MB8 LINE L1 -6 6172 5070 2142 120 3 3 chr15 29476129 29476429 -71904092 - AluSx SINE Alu -12 300 1 4128 171 55 30 chr15 29476429 29477235 -71903286 - L1MB8 LINE L1 -1108 5070 4286 306 333 28 28 chr15 29477303 29477480 -71903041 + L2 LINE L2 2535 2711 -603 1695 121 114 0 chr15 29479011 29479283 -71901238 + AluSx SINE Alu 1 303 -9 1817 86 127 4 chr15 29479296 29479564 -71900957 + AluSp SINE Alu 1 301 -2 663 278 190 0 chr15 29479617 29479833 -71900688 + MIR SINE MIR 6 262 0 680 215 0 15 chr15 29481153 29481288 -71899233 + FLAM_C SINE Alu 1 133 0 2091 104 7 0 chr15 29483042 29483322 -71897199 + AluSx SINE Alu 1 282 -30 2144 119 3 0 chr15 29484079 29484374 -71896147 - AluSx SINE Alu -16 296 1 503 76 13 0 chr15 29534667 29534746 -71845775 - L1PB2 LINE L1 -7 6144 6065 500 282 63 41 chr15 29534749 29535065 -71845456 + L2 LINE L2 744 1066 -2248 367 313 0 0 chr15 29536013 29536109 -71844412 + MIR SINE MIR 164 259 -3 939 205 111 5 chr15 29536146 29536336 -71844185 - MIR SINE MIR -47 215 6 1926 167 0 0 chr15 29536362 29536650 -71843871 - AluJo SINE Alu -24 288 1 207 69 0 0 chr15 29536674 29536703 -71843818 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2356 98 3 0 chr15 29537352 29537657 -71842864 - AluY SINE Alu -5 306 1 25 0 0 0 chr15 29538631 29538656 -71841865 + AT_rich Low_complexity Low_complexity 1 25 0 245 258 55 55 chr15 29539290 29539418 -71841103 - L1MC5 LINE L1 -83 7878 7751 280 328 102 16 chr15 29539609 29539737 -71840784 + MIR3 SINE MIR 4 142 -66 303 202 60 24 chr15 29539958 29540042 -71840479 + L1PB4 LINE L1 5999 6085 -71 356 105 0 0 chr15 29540045 29540102 -71840419 + Alu SINE Alu 1 57 -246 1621 195 11 0 chr15 29541799 29542086 -71838435 + AluJo SINE Alu 1 290 -22 420 341 147 13 chr15 29542773 29543087 -71837434 - L2 LINE L2 -550 2764 2409 727 293 71 46 chr15 29544494 29544845 -71835676 + L2 LINE L2 2945 3304 -9 2330 87 0 3 chr15 29545172 29545471 -71835050 + AluSx SINE Alu 1 298 -14 1731 148 42 3 chr15 29545486 29545769 -71834752 + AluJo SINE Alu 5 298 -14 2600 124 39 10 chr15 29545927 29546337 -71834184 + L1MA7 LINE L1 5865 6286 -5 2475 49 0 0 chr15 29546385 29546672 -71833849 - AluY SINE Alu -24 287 1 2081 99 10 10 chr15 29547421 29547713 -71832808 - AluSx SINE Alu -20 292 1 285 39 118 39 chr15 29547881 29547932 -71832589 - L1M1 LINE L1 -869 5436 5382 * 1986 73 39 0 chr15 29547918 29548178 -71832343 + L1P4 LINE L1 5437 5706 -460 1878 196 87 26 chr15 29548184 29548955 -71831566 + LTR28 LTR ERV1 54 941 -79 363 259 37 52 chr15 29548990 29549125 -71831396 + LTR27 LTR ERV1 502 634 -2 837 132 0 0 chr15 29549129 29549250 -71831271 + L1PA16 LINE L1 6042 6162 -4 1545 161 44 11 chr15 29549252 29549525 -71830996 + AluJo SINE Alu 1 282 -30 1222 196 178 124 chr15 29549870 29550946 -71829575 + L1MC5 LINE L1 6779 7911 -50 2483 55 0 3 chr15 29551029 29551319 -71829202 + AluY SINE Alu 1 289 -22 370 329 109 62 chr15 29551353 29551663 -71828858 - L2 LINE L2 0 3313 2970 826 240 77 5 chr15 29551663 29551859 -71828662 + MER63A DNA MER1_type 1 210 0 370 329 109 62 chr15 29551859 29552034 -71828487 - L2 LINE L2 -343 2970 2805 198 0 0 0 chr15 29552123 29552145 -71828376 + (T)n Simple_repeat Simple_repeat 1 22 0 641 249 133 28 chr15 29552166 29552518 -71828003 + L1MEc LINE L1 2184 2538 -3677 1772 151 36 0 chr15 29552568 29552846 -71827675 - AluJo SINE Alu -24 288 1 335 347 104 19 chr15 29552953 29553328 -71827193 - L1MCa LINE L1 -4063 2544 2138 867 166 80 0 chr15 29553531 29553682 -71826839 - MER20 DNA MER1_type -3 216 54 753 189 0 0 chr15 29553682 29553804 -71826717 + FLAM_C SINE Alu 2 123 -20 357 208 108 8 chr15 29553831 29553984 -71826537 - L1MCa LINE L1 -971 1816 1407 2270 113 0 3 chr15 29554959 29555270 -71825251 - AluSx SINE Alu 0 312 3 1753 201 53 84 chr15 29555706 29556250 -71824271 - L1MC5 LINE L1 -458 7503 6977 1314 146 176 42 chr15 29556250 29556511 -71824010 - AluJo SINE Alu -5 297 2 1753 201 53 84 chr15 29556511 29556552 -71823969 - L1MC5 LINE L1 -984 6977 6936 1718 111 103 109 chr15 29556564 29556635 -71823886 - THE1C LTR MaLR 0 375 305 2104 148 0 0 chr15 29556635 29556945 -71823576 + AluSx SINE Alu 1 310 -2 1718 111 103 109 chr15 29556945 29557250 -71823271 - THE1C LTR MaLR -70 305 1 794 286 35 48 chr15 29557263 29557658 -71822863 - L1M4 LINE L1 -2220 3926 3537 243 0 0 0 chr15 29557717 29557744 -71822777 + (CA)n Simple_repeat Simple_repeat 2 28 0 2131 109 16 10 chr15 29558080 29558384 -71822137 - AluSg SINE Alu -2 308 3 2077 147 0 0 chr15 29559183 29559495 -71821026 + AluSx SINE Alu 1 312 0 250 226 38 0 chr15 29559552 29559605 -71820916 - L2 LINE L2 -3 3310 3256 322 284 68 81 chr15 29559883 29560520 -71820001 + L1ME4a LINE L1 5375 6036 -85 2286 84 7 0 chr15 29560647 29560943 -71819578 + AluY SINE Alu 1 298 -13 3161 178 30 2 chr15 29561682 29562256 -71818265 + L1MB4 LINE L1 5590 6179 -1 746 169 118 6 chr15 29562737 29562915 -71817606 + Charlie4 DNA MER1_type 36 233 -1728 1549 181 14 11 chr15 29563267 29563548 -71816973 + AluJo SINE Alu 1 282 -30 208 238 75 38 chr15 29563726 29563806 -71816715 - MIR3 SINE MIR -7 201 119 2120 106 3 0 chr15 29564259 29564586 -71815935 + AluSx SINE Alu 1 328 0 2024 145 0 3 chr15 29564824 29565135 -71815386 + AluSx SINE Alu 3 312 0 765 169 0 31 chr15 29565370 29565487 -71815034 + AluJo/FLAM SINE Alu 5 119 -183 1976 169 0 0 chr15 29565487 29565789 -71814732 - AluJb SINE Alu -10 302 1 765 169 0 31 chr15 29565789 29565801 -71814720 + AluJo/FLAM SINE Alu 119 130 -172 2357 75 0 0 chr15 29565822 29566114 -71814407 + AluY SINE Alu 20 311 0 201 226 102 95 chr15 29567102 29567239 -71813282 - MIR SINE MIR -62 200 63 683 235 70 0 chr15 29567468 29567655 -71812866 + MIR SINE MIR 63 262 0 220 279 15 15 chr15 29568246 29568314 -71812207 + MER5A DNA MER1_type 117 184 -5 2347 86 0 29 chr15 29569166 29569480 -71811041 + AluSx SINE Alu 5 309 -3 819 185 0 0 chr15 29569494 29569624 -71810897 + FLAM_A SINE Alu 13 142 0 2501 65 7 3 chr15 29570105 29570413 -71810108 + AluSp SINE Alu 1 309 -4 1966 106 3 25 chr15 29570733 29571016 -71809505 + AluY SINE Alu 1 277 -34 2256 115 0 0 chr15 29571128 29571432 -71809089 + AluSx SINE Alu 7 310 -2 2059 137 19 0 chr15 29571806 29572121 -71808400 + L1MA4 LINE L1 5699 6019 -281 23 0 0 0 chr15 29572207 29572230 -71808291 + AT_rich Low_complexity Low_complexity 1 23 0 2057 88 33 4 chr15 29572240 29572565 -71807956 + AluY SINE Alu 1 333 0 185 348 67 0 chr15 29572656 29572745 -71807776 - MIR SINE MIR -118 144 50 2971 205 49 31 chr15 29573034 29573710 -71806811 + L1ME2 LINE L1 5431 6122 -42 2086 109 34 0 chr15 29573710 29574004 -71806517 + AluSp SINE Alu 2 305 -8 2971 205 49 31 chr15 29574004 29574038 -71806483 + L1ME2 LINE L1 6122 6154 -10 2418 99 0 3 chr15 29574301 29574614 -71805907 + AluSx SINE Alu 1 312 0 1531 227 130 19 chr15 29574663 29574921 -71805600 + L1MB7 LINE L1 5174 5402 -782 2326 125 12 18 chr15 29574921 29575256 -71805265 + MER1B DNA MER1_type 5 337 0 1531 227 130 19 chr15 29575256 29575276 -71805245 + L1MB7 LINE L1 5402 5418 -766 1627 171 43 7 chr15 29575276 29575556 -71804965 + AluJb SINE Alu 3 292 -20 1531 227 130 19 chr15 29575556 29575948 -71804573 + L1MB7 LINE L1 5418 5902 -282 22 0 0 0 chr15 29576213 29576235 -71804286 + AT_rich Low_complexity Low_complexity 1 22 0 1116 212 113 3 chr15 29576427 29576719 -71803802 - MER5C DNA MER1_type 0 324 1 26 0 0 0 chr15 29577226 29577252 -71803269 + AT_rich Low_complexity Low_complexity 1 26 0 296 224 224 0 chr15 29577360 29577458 -71803063 - L2 LINE L2 0 3272 3153 1401 143 0 59 chr15 29578289 29578527 -71801994 - AluJb SINE Alu -4 308 85 388 302 24 8 chr15 29578584 29578710 -71801811 + MIR SINE MIR 3 130 -132 2133 108 24 0 chr15 29578990 29579277 -71801244 + AluSg SINE Alu 1 294 -16 263 296 0 0 chr15 29579994 29580065 -71800456 - HsTC2 DNA Tc2 -1827 71 1 1850 133 0 70 chr15 29580202 29580518 -71800003 + AluJo SINE Alu 1 294 -18 386 305 146 26 chr15 29580743 29580894 -71799627 + MER91A DNA MER1_type 1 169 -27 572 165 0 0 chr15 29581340 29581419 -71799102 + AluJ/FLAM SINE Alu 2 80 -232 639 237 118 65 chr15 29581428 29581921 -71798600 - L1MC5 LINE L1 -55 7906 7388 1990 150 20 0 chr15 29581996 29582302 -71798219 + AluJb SINE Alu 1 312 0 1555 104 0 5 chr15 29582449 29582683 -71797838 + AluSc SINE Alu 83 315 0 1704 111 126 4 chr15 29582785 29583046 -71797475 - AluSx SINE Alu -19 293 1 197 211 35 35 chr15 29583050 29583107 -71797414 - MER5B DNA MER1_type -120 58 2 183 254 60 15 chr15 29583259 29583326 -71797195 - L2 LINE L2 -94 3219 3150 258 325 77 34 chr15 29583958 29584075 -71796446 + L2 LINE L2 3141 3262 -10 2122 124 7 0 chr15 29584108 29584415 -71796106 + AluSx SINE Alu 1 309 -3 425 283 133 8 chr15 29584502 29584622 -71795899 + MIR3 SINE MIR 3 137 -71 1355 113 0 10 chr15 29584823 29585017 -71795504 - AluSg/x SINE Alu 0 312 121 2104 148 32 11 chr15 29585143 29585488 -71795033 + L1MB2 LINE L1 5785 6140 -31 2097 135 6 6 chr15 29585488 29585800 -71794721 - AluSx SINE Alu 0 312 1 2104 148 32 11 chr15 29585800 29585833 -71794688 + L1MB2 LINE L1 6140 6171 0 2108 105 28 3 chr15 29585939 29586224 -71794297 + AluSx SINE Alu 3 294 -18 36839 98 14 14 chr15 29586421 29592571 -71787950 - L1PA7 LINE L1 0 6154 11 24 0 0 0 chr15 29592714 29592738 -71787783 + AT_rich Low_complexity Low_complexity 1 24 0 2107 128 3 0 chr15 29592738 29593028 -71787493 - AluSx SINE Alu -21 291 1 1561 192 7 17 chr15 29593035 29593327 -71787194 - AluJb SINE Alu -23 289 1 1925 108 0 78 chr15 29593673 29593979 -71786542 - AluSg SINE Alu -28 282 1 1310 220 45 14 chr15 29593988 29594279 -71786242 - AluJo SINE Alu -12 300 1 1153 264 125 70 chr15 29594701 29595565 -71784956 + L2 LINE L2 2392 3313 0 2307 80 33 3 chr15 29595594 29595893 -71784628 + AluSg SINE Alu 1 308 -2 693 302 150 39 chr15 29595934 29596118 -71784403 + L2 LINE L2 2512 2674 -639 1478 186 34 28 chr15 29596118 29596409 -71784112 + AluJb SINE Alu 1 293 -19 693 302 150 39 chr15 29596409 29596795 -71783726 + L2 LINE L2 2674 3182 -131 2276 116 0 0 chr15 29596795 29597105 -71783416 - AluSq SINE Alu -3 310 1 693 302 150 39 chr15 29597105 29597253 -71783268 + L2 LINE L2 3182 3312 -1 278 289 63 42 chr15 29597266 29597408 -71783113 + MER5A DNA MER1_type 45 189 0 273 57 0 0 chr15 29597426 29597461 -71783060 + (TGAG)n Simple_repeat Simple_repeat 1 35 0 1221 209 8 4 chr15 29597461 29597695 -71782826 - AluJo SINE Alu -77 235 1 286 269 19 19 chr15 29597818 29597922 -71782599 - MER103 DNA DNA -19 147 44 28 61 0 0 chr15 29598190 29598239 -71782282 + AT_rich Low_complexity Low_complexity 1 49 0 2148 96 4 4 chr15 29598349 29598658 -71781863 - AluSc SINE Alu 0 309 1 4319 119 8 37 chr15 29598875 29599596 -71780925 - L1MA5A LINE L1 -56 6241 5542 2130 102 3 0 chr15 29600806 29601133 -71779388 - AluSx SINE Alu 0 328 1 293 222 111 60 chr15 29601498 29601615 -71778906 - MIR SINE MIR -3 259 137 307 247 25 0 chr15 29601615 29601696 -71778825 + HAL1 LINE L1 1777 1859 -648 284 326 27 34 chr15 29601704 29601851 -71778670 + MIR SINE MIR 9 154 -108 2217 118 0 3 chr15 29602164 29602461 -71778060 + AluSp SINE Alu 1 296 -17 195 354 49 12 chr15 29602610 29602692 -71777829 - L2 LINE L2 -49 3223 3139 728 230 168 7 chr15 29603561 29603865 -71776656 - MER113 DNA MER1_type? -163 358 6 289 288 166 14 chr15 29603893 29604032 -71776489 - MIR SINE MIR -83 179 20 295 228 38 51 chr15 29604465 29604544 -71775977 - L2 LINE L2 -4 3309 3232 2116 104 0 0 chr15 29604657 29604962 -71775559 + AluSg SINE Alu 15 310 0 401 289 39 23 chr15 29605816 29605944 -71774577 - L2 LINE L2 -4 3268 3139 248 306 276 17 chr15 29606233 29606465 -71774056 - L2 LINE L2 -497 2817 2526 1403 174 48 37 chr15 29606962 29607256 -71773265 + AluJb SINE Alu 1 297 -15 1899 92 88 4 chr15 29607410 29607683 -71772838 - AluSq SINE Alu -17 296 1 754 66 0 0 chr15 29608146 29608237 -71772284 + AluS SINE Alu 2 92 -220 2041 106 4 0 chr15 29608851 29609115 -71771406 + AluSq SINE Alu 1 265 -48 1760 167 3 27 chr15 29609115 29609415 -71771106 + AluJo SINE Alu 10 302 -10 438 169 49 78 chr15 29609818 29609960 -71770561 - L1MD2 LINE L1 -409 5950 5813 * 3361 178 77 36 chr15 29609954 29609994 -71770527 - L1MB7 LINE L1 0 6184 6147 2037 143 97 30 chr15 29609994 29610365 -71770156 + MSTD LTR MaLR 1 396 0 3361 178 77 36 chr15 29610365 29611105 -71769416 - L1MB7 LINE L1 -37 6147 5372 485 299 143 29 chr15 29611500 29611885 -71768636 - HAL1 LINE L1 -966 1541 1113 495 239 34 86 chr15 29611910 29612119 -71768402 - L2 LINE L2 0 3313 3116 2268 86 3 13 chr15 29612194 29612495 -71768026 - AluY SINE Alu -13 298 1 923 239 50 41 chr15 29613300 29613618 -71766903 + L1ME1 LINE L1 5845 6165 -1 601 189 94 47 chr15 29613917 29614044 -71766477 - FLAM_C SINE Alu 0 133 1 25 31 0 0 chr15 29614517 29614549 -71765972 + AT_rich Low_complexity Low_complexity 1 32 0 2147 130 0 13 chr15 29614776 29615083 -71765438 + AluSx SINE Alu 1 303 -9 419 312 147 6 chr15 29615353 29615510 -71765011 + MIR SINE MIR 14 192 -70 22 94 0 0 chr15 29615719 29615783 -71764738 + AT_rich Low_complexity Low_complexity 1 64 0 1120 133 152 38 chr15 29616437 29616606 -71763915 - AluJb SINE Alu -17 295 96 234 0 0 0 chr15 29616606 29616632 -71763889 + (TG)n Simple_repeat Simple_repeat 2 27 0 1120 133 152 38 chr15 29616632 29616672 -71763849 - AluJb SINE Alu -216 96 62 238 94 0 0 chr15 29616692 29616724 -71763797 - Alu SINE Alu -206 96 65 198 0 0 0 chr15 29616724 29616746 -71763775 + (TG)n Simple_repeat Simple_repeat 2 23 0 260 86 0 0 chr15 29616751 29616786 -71763735 - AluJ/FLAM SINE Alu -206 96 62 238 94 0 0 chr15 29616802 29616834 -71763687 - Alu SINE Alu -37 96 65 216 0 0 0 chr15 29616834 29616858 -71763663 + (TG)n Simple_repeat Simple_repeat 2 25 0 238 94 0 0 chr15 29616863 29616895 -71763626 - Alu SINE Alu -206 96 65 246 62 0 0 chr15 29616895 29616927 -71763594 + (TG)n Simple_repeat Simple_repeat 2 33 0 366 23 0 0 chr15 29616965 29617008 -71763513 + (TG)n Simple_repeat Simple_repeat 2 44 0 238 94 0 0 chr15 29617013 29617045 -71763476 - Alu SINE Alu -206 96 65 216 0 0 0 chr15 29617045 29617069 -71763452 + (TG)n Simple_repeat Simple_repeat 2 25 0 245 91 0 0 chr15 29617074 29617107 -71763414 - Alu SINE Alu -38 95 63 270 0 0 0 chr15 29617108 29617138 -71763383 + (TG)n Simple_repeat Simple_repeat 2 31 0 238 94 0 0 chr15 29617143 29617175 -71763346 - Alu SINE Alu -37 96 65 450 0 0 0 chr15 29617175 29617225 -71763296 + (TG)n Simple_repeat Simple_repeat 2 51 0 630 158 0 0 chr15 29617229 29617324 -71763197 - AluJ/FLAM SINE Alu -216 96 2 31 26 0 0 chr15 29617711 29617749 -71762772 + AT_rich Low_complexity Low_complexity 1 38 0 259 287 189 6 chr15 29617968 29618132 -71762389 + MIR SINE MIR 6 199 -63 465 281 69 26 chr15 29618412 29618662 -71761859 - MIR SINE MIR -13 249 18 278 229 153 70 chr15 29618780 29618937 -71761584 - L2 LINE L2 -18 3295 3126 13882 109 31 96 chr15 29619068 29620232 -71760289 + Tigger1 DNA MER2_type 1 1239 -1179 710 201 15 22 chr15 29620232 29620366 -71760155 + FLAM_A SINE Alu 1 133 0 13882 109 31 96 chr15 29620366 29620456 -71760065 + Tigger1 DNA MER2_type 1239 1333 -1085 2289 97 7 3 chr15 29620456 29620754 -71759767 - AluSx SINE Alu -13 299 1 13882 109 31 96 chr15 29620754 29621135 -71759386 + Tigger1 DNA MER2_type 1333 1737 -681 734 81 20 10 chr15 29621135 29621234 -71759287 + HY3 scRNA scRNA 1 100 -1 13882 109 31 96 chr15 29621234 29621848 -71758673 + Tigger1 DNA MER2_type 1737 2389 -29 828 178 0 37 chr15 29621848 29621983 -71758538 + FLAM_A SINE Alu 1 130 -12 13882 109 31 96 chr15 29621983 29622111 -71758410 + Tigger1 DNA MER2_type 2389 2348 -70 1598 97 198 0 chr15 29622111 29622374 -71758147 + AluY SINE Alu 1 310 0 13882 109 31 96 chr15 29622374 29622442 -71758079 + Tigger1 DNA MER2_type 2347 2418 0 2210 117 3 0 chr15 29623829 29624137 -71756384 + AluSx SINE Alu 1 309 -3 1754 105 0 39 chr15 29625538 29625795 -71754726 - AluSx SINE Alu -10 302 56 2110 134 7 3 chr15 29625938 29626243 -71754278 + AluSq SINE Alu 1 306 -7 21 57 0 0 chr15 29630031 29630066 -71750455 + GC_rich Low_complexity Low_complexity 1 35 0 2151 108 0 19 chr15 29630581 29630896 -71749625 + AluSq SINE Alu 1 309 -4 655 141 8 6 chr15 29632425 29632668 -71747853 + AluJ SINE Alu 1 297 -15 2264 105 0 0 chr15 29632815 29633111 -71747410 + AluSq SINE Alu 1 296 -17 2119 135 0 10 chr15 29633117 29633420 -71747101 + AluSx SINE Alu 1 300 -12 197 281 219 31 chr15 29633464 29633560 -71746961 - MIR SINE MIR -77 131 18 1948 119 46 16 chr15 29634405 29634510 -71746011 + AluJb SINE Alu 1 101 -211 185 56 0 56 chr15 29634510 29634546 -71745975 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1948 119 46 16 chr15 29634546 29634743 -71745778 + AluJb SINE Alu 101 312 0 1150 122 6 11 chr15 29634873 29635054 -71745467 - AluSx SINE Alu -132 180 1 225 315 37 9 chr15 29635977 29636085 -71744436 + L1ME LINE L1 5625 5735 -386 1909 93 72 7 chr15 29636150 29636428 -71744093 + AluSq SINE Alu 1 296 -17 2411 64 27 0 chr15 29636438 29636735 -71743786 + AluSg SINE Alu 1 305 -5 2408 65 0 3 chr15 29636943 29637235 -71743286 + AluY SINE Alu 1 291 -20 428 89 0 0 chr15 29638808 29638864 -71741657 + Alu SINE Alu 2 57 -261 187 316 0 0 chr15 29639037 29639094 -71741427 + L2 LINE L2 3234 3290 -23 2199 123 0 3 chr15 29639785 29640093 -71740428 + AluSx SINE Alu 1 307 -5 777 171 0 0 chr15 29640325 29640442 -71740079 + AluJo/FLAM SINE Alu 5 121 -191 1518 172 0 0 chr15 29640442 29640680 -71739841 - AluJb SINE Alu -11 301 64 2371 85 0 7 chr15 29640783 29641088 -71739433 - AluSg SINE Alu -7 303 1 1723 166 10 10 chr15 29641109 29641398 -71739123 - AluJb SINE Alu -23 289 1 188 245 28 147 chr15 29641926 29642069 -71738452 + MIR3 SINE MIR 42 167 -41 1737 189 0 38 chr15 29645986 29646299 -71734222 - AluJb SINE Alu -11 301 1 357 256 0 11 chr15 29646494 29646584 -71733937 + L3b LINE CR1 1252 1340 -243 30 77 0 0 chr15 29646820 29646885 -71733636 + AT_rich Low_complexity Low_complexity 1 65 0 195 42 0 0 chr15 29649597 29649621 -71730900 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2262 90 4 0 chr15 29649623 29649902 -71730619 - AluSx SINE Alu -32 280 1 226 254 8 68 chr15 29649943 29650061 -71730460 + CT-rich Low_complexity Low_complexity 2 112 0 2346 70 0 88 chr15 29652315 29652657 -71727864 - AluSp SINE Alu -1 312 1 213 39 0 0 chr15 29654514 29654540 -71725981 + (CCCCCG)n Simple_repeat Simple_repeat 1 26 0 25 102 0 0 chr15 29655081 29655169 -71725352 + GC_rich Low_complexity Low_complexity 1 88 0 22 0 0 0 chr15 29655225 29655247 -71725274 + GC_rich Low_complexity Low_complexity 1 22 0 786 177 0 8 chr15 29656284 29656414 -71724107 - FLAM_C SINE Alu -4 129 1 426 20 0 0 chr15 29656517 29656568 -71723953 + (TG)n Simple_repeat Simple_repeat 2 52 0 2242 106 0 20 chr15 29656569 29656872 -71723649 - AluSg SINE Alu -12 298 2 2223 87 16 42 chr15 29656874 29657184 -71723337 - AluSq SINE Alu -11 302 1 2024 169 82 67 chr15 29657294 29657340 -71723181 - LTR49 LTR ERV1 -48 739 695 2305 84 3 50 chr15 29657340 29657660 -71722861 - AluSx SINE Alu -7 305 1 2024 169 82 67 chr15 29657660 29658122 -71722399 - LTR49 LTR ERV1 -92 695 1 665 199 15 11 chr15 29658642 29658913 -71721608 + CT-rich Low_complexity Low_complexity 1 272 0 739 151 20 12 chr15 29658934 29659188 -71721333 + CT-rich Low_complexity Low_complexity 1 256 0 651 140 79 26 chr15 29659188 29659302 -71721219 - FLAM_C SINE Alu -15 128 9 25 0 0 0 chr15 29659315 29659340 -71721181 + AT_rich Low_complexity Low_complexity 1 25 0 858 167 0 0 chr15 29659341 29659473 -71721048 - FLAM_C SINE Alu -5 138 7 904 149 0 36 chr15 29659491 29659659 -71720862 + MLT1A1 LTR MaLR 1 162 -212 510 125 0 0 chr15 29659659 29659739 -71720782 + (GA)n Simple_repeat Simple_repeat 1 80 0 1083 165 11 5 chr15 29659770 29659958 -71720563 + MLT1A1 LTR MaLR 177 365 0 2002 166 0 3 chr15 29660317 29660630 -71719891 + AluJb SINE Alu 1 312 0 1800 169 3 43 chr15 29660836 29661161 -71719360 + AluJb SINE Alu 1 312 0 22 35 0 0 chr15 29662680 29662709 -71717812 + AT_rich Low_complexity Low_complexity 1 29 0 1764 179 53 62 chr15 29662829 29663092 -71717429 + MER4D LTR ERV1 1 265 -638 183 80 0 0 chr15 29663092 29663117 -71717404 + (TA)n Simple_repeat Simple_repeat 1 25 0 1764 179 53 62 chr15 29663117 29663158 -71717363 + MER4D LTR ERV1 265 305 -598 2155 136 0 0 chr15 29663158 29663452 -71717069 - AluSc SINE Alu -15 294 1 1764 179 53 62 chr15 29663452 29663474 -71717047 + MER4D LTR ERV1 305 326 -577 464 0 18 0 chr15 29663474 29663530 -71716991 + (TA)n Simple_repeat Simple_repeat 1 57 0 279 0 0 0 chr15 29663531 29663562 -71716959 + (TG)n Simple_repeat Simple_repeat 2 32 0 1838 177 21 0 chr15 29663565 29663847 -71716674 - AluSx SINE Alu -24 288 1 1764 179 53 62 chr15 29663847 29663981 -71716540 + MER4D LTR ERV1 328 465 -438 1408 176 114 70 chr15 29663982 29664413 -71716108 + LTR7 LTR ERV1 1 450 0 2603 142 9 24 chr15 29664413 29664879 -71715642 + HERVH LTR ERV1 1 459 -7254 13149 136 6 22 chr15 29664933 29667173 -71713348 + HERVH LTR ERV1 793 2995 -4718 5558 111 8 2 chr15 29667152 29668007 -71712514 + HERVH LTR ERV1 3140 3999 -3714 * 4968 114 25 1 chr15 29668068 29668824 -71711697 + HERVH LTR ERV1 3995 4768 -2945 2638 103 7 12 chr15 29668822 29669238 -71711283 + HERVH LTR ERV1 7300 7713 0 * 1249 184 106 61 chr15 29669238 29669662 -71710859 + LTR7 LTR ERV1 1 443 -7 1886 130 35 130 chr15 29669676 29670137 -71710384 + MER4D LTR ERV1 487 903 0 4128 134 14 2 chr15 29670234 29670859 -71709662 + MER41B LTR ERV1 1 633 -2 4378 107 32 33 chr15 29670863 29671582 -71708939 + MER41B-int LTR ERV1 4 721 -5225 335 203 32 49 chr15 29671586 29671674 -71708847 + MER41B LTR ERV1 428 515 -120 2340 97 7 3 chr15 29671674 29671974 -71708547 - AluSq SINE Alu -8 305 5 335 203 32 49 chr15 29671974 29672008 -71708513 + MER41B LTR ERV1 515 548 -87 29 0 0 0 chr15 29672521 29672550 -71707971 + AT_rich Low_complexity Low_complexity 1 29 0 271 78 39 0 chr15 29675074 29675125 -71705396 + C-rich Low_complexity Low_complexity 42 94 0 198 214 24 0 chr15 29675898 29675940 -71704581 - MIR SINE MIR -62 146 103 222 235 39 0 chr15 29676438 29676489 -71704032 - MIR SINE MIR -61 147 95 433 212 130 53 chr15 29677484 29677653 -71702868 - MIR SINE MIR -59 149 16 216 0 0 0 chr15 29677839 29677863 -71702658 + (CA)n Simple_repeat Simple_repeat 2 25 0 358 226 78 26 chr15 29679257 29679372 -71701149 - L2 LINE L2 -5 3308 3188 327 331 119 0 chr15 29679379 29679530 -71700991 - MIR3 SINE MIR -9 199 31 382 313 62 6 chr15 29680433 29680609 -71699912 - MIR SINE MIR -29 233 48 1974 101 31 7 chr15 29680611 29680899 -71699622 - AluY SINE Alu -16 295 1 521 93 0 13 chr15 29683601 29683676 -71696845 + AluS SINE Alu 2 75 -237 2193 128 0 6 chr15 29684322 29684634 -71695887 + AluSx SINE Alu 1 310 -2 382 295 93 39 chr15 29684712 29684841 -71695680 - L2 LINE L2 -15 3257 3122 328 224 47 0 chr15 29685038 29685123 -71695398 - MIR SINE MIR -114 148 60 284 283 133 17 chr15 29685392 29685512 -71695009 + L2 LINE L2 3180 3313 0 594 264 65 20 chr15 29685598 29685799 -71694722 - MER82 DNA MER2_type 0 653 444 328 311 52 27 chr15 29685835 29686027 -71694494 + MIR SINE MIR 4 202 -57 302 316 0 11 chr15 29686046 29686141 -71694380 - MER82 DNA MER2_type -559 94 1 201 292 15 0 chr15 29686419 29686484 -71694037 + L2 LINE L2 3158 3223 -90 744 183 0 0 chr15 29686782 29686897 -71693624 - FLAM_A SINE Alu -18 115 1 307 91 0 0 chr15 29688680 29688724 -71691797 + Alu SINE Alu 1 44 -257 203 171 0 0 chr15 29688807 29688848 -71691673 + T-rich Low_complexity Low_complexity 5 45 0 365 301 115 50 chr15 29689080 29689855 -71690666 - L1MEd LINE L1 -3193 2936 2112 268 279 84 63 chr15 29689914 29690122 -71690399 - L1MEd LINE L1 -4974 1145 930 1343 163 32 112 chr15 29690122 29690460 -71690061 - AluJb SINE Alu -1 311 1 268 279 84 63 chr15 29690460 29690488 -71690033 - L1MEd LINE L1 -5189 930 904 358 320 85 29 chr15 29690564 29690870 -71689651 - L1MEd LINE L1 -5236 883 561 576 224 135 13 chr15 29691424 29691580 -71688941 + MIR SINE MIR 24 198 -64 2011 135 6 22 chr15 29693384 29693702 -71686819 - AluSq SINE Alu 0 313 1 393 289 59 90 chr15 29694255 29694495 -71686026 - L1ME3A LINE L1 -10 6160 5939 1233 202 0 13 chr15 29694519 29694757 -71685764 - MER106A DNA MER1_type -1 235 1 698 243 108 21 chr15 29694768 29695126 -71685395 - L1ME3A LINE L1 -218 5952 5535 222 37 0 0 chr15 29695709 29695736 -71684785 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 631 188 0 81 chr15 29695739 29695888 -71684633 - AluJb SINE Alu -30 282 146 294 299 68 68 chr15 29696658 29696835 -71683686 + MIR SINE MIR 71 247 -15 21 36 0 0 chr15 29696971 29696999 -71683522 + AT_rich Low_complexity Low_complexity 1 28 0 256 291 23 23 chr15 29697231 29697317 -71683204 - MIR SINE MIR -70 192 107 1612 174 0 7 chr15 29697663 29697951 -71682570 + AluJo SINE Alu 1 286 -26 1139 178 0 10 chr15 29698509 29698717 -71681804 - AluSg/x SINE Alu -13 297 92 311 315 98 39 chr15 29698959 29699162 -71681359 + HAL1 LINE L1 2255 2469 -38 2130 115 0 7 chr15 29699407 29699711 -71680810 + AluSx SINE Alu 1 302 -10 193 129 60 35 chr15 29701344 29701460 -71679061 + (CA)n Simple_repeat Simple_repeat 1 119 0 235 150 24 63 chr15 29701471 29701598 -71678923 + (CACAC)n Simple_repeat Simple_repeat 5 126 0 249 215 47 19 chr15 29701617 29701724 -71678797 + (CA)n Simple_repeat Simple_repeat 1 110 0 181 230 27 0 chr15 29702206 29702280 -71678241 + C-rich Low_complexity Low_complexity 3 78 0 283 254 92 2 chr15 29702510 29702630 -71677891 - L1ME LINE L1 -363 5799 5668 336 24 0 0 chr15 29704599 29704640 -71675881 + (TG)n Simple_repeat Simple_repeat 2 42 0 2113 120 3 0 chr15 29705201 29705501 -71675020 - AluSx SINE Alu -11 301 1 2308 138 37 0 chr15 29706012 29706395 -71674126 + L1MB3 LINE L1 5787 6183 0 1236 139 15 105 chr15 29706512 29706779 -71673742 - MSTB LTR MaLR -183 243 1 2029 164 31 10 chr15 29708242 29708625 -71671896 - L1MB5 LINE L1 -1 6173 5783 548 126 11 0 chr15 29708626 29708713 -71671808 - AluSg/x SINE Alu -6 306 219 546 213 0 0 chr15 29708721 29708829 -71671692 - L1MB5 LINE L1 -389 5785 5678 620 227 142 98 chr15 29708864 29709384 -71671137 - MLT1H1 LTR MaLR 0 555 19 232 220 131 42 chr15 29709411 29709625 -71670896 - HAL1 LINE L1 -1449 1058 826 1876 141 7 3 chr15 29709694 29710011 -71670510 + AluJo SINE Alu 1 312 0 242 296 66 84 chr15 29710298 29710632 -71669889 - HAL1 LINE L1 -2170 337 10 1006 196 47 23 chr15 29710977 29711191 -71669330 + MER20 DNA MER1_type 1 219 0 2319 75 3 0 chr15 29712075 29712380 -71668141 - AluSq SINE Alu -7 306 1 341 64 0 6 chr15 29712601 29712687 -71667834 - AluSp/q SINE Alu 0 317 245 2102 167 33 14 chr15 29712894 29713314 -71667207 + L1MB3 LINE L1 5754 6181 -2 1270 186 0 0 chr15 29715421 29715641 -71664880 + AluJb SINE Alu 73 292 -20 210 308 64 0 chr15 29715792 29715870 -71664651 + MIR SINE MIR 15 97 -165 195 69 0 0 chr15 29715894 29715923 -71664598 + (TC)n Simple_repeat Simple_repeat 1 29 0 1648 151 52 0 chr15 29717994 29718285 -71662236 + AluJb SINE Alu 1 306 -6 790 320 86 42 chr15 29718382 29719156 -71661365 + L1ME LINE L1 4739 5544 -622 447 277 44 29 chr15 29719184 29719390 -71661131 + L1ME LINE L1 5547 5755 -366 690 193 0 22 chr15 29719939 29720074 -71660447 + FLAM_A SINE Alu 1 132 -1 2286 83 3 0 chr15 29720227 29720529 -71659992 + AluY SINE Alu 1 303 -8 1732 143 10 17 chr15 29721270 29721570 -71658951 - AluJo SINE Alu -14 298 1 195 42 0 0 chr15 29722074 29722098 -71658423 + (A)n Simple_repeat Simple_repeat 1 24 0 474 18 0 0 chr15 29724468 29724523 -71655998 + (TA)n Simple_repeat Simple_repeat 1 55 0 2077 146 193 71 chr15 29724587 29725122 -71655399 - MER7C DNA MER2_type 0 602 3 223 322 110 44 chr15 29725560 29725787 -71654734 + MIR SINE MIR 21 262 0 735 254 225 17 chr15 29726866 29727212 -71653309 - L2 LINE L2 0 3313 2896 27 62 0 0 chr15 29730478 29730526 -71649995 + GC_rich Low_complexity Low_complexity 1 48 0 429 173 53 0 chr15 29730601 29730902 -71649619 + (CCG)n Simple_repeat Simple_repeat 1 316 0 419 143 0 0 chr15 29731056 29731119 -71649402 + L1PA7 LINE L1 6081 6143 -11 30 0 0 0 chr15 29731623 29731653 -71648868 + AT_rich Low_complexity Low_complexity 1 30 0 338 182 136 0 chr15 29732017 29732083 -71648438 + MADE1 DNA Mariner 1 75 -5 1280 188 121 30 chr15 29732127 29732457 -71648064 + MER46B DNA MER2_type 2 236 0 301 240 31 62 chr15 29732892 29732988 -71647533 - L1MC4 LINE L1 -1334 6708 6616 1257 138 14 24 chr15 29733086 29733383 -71647138 - THE1B LTR MaLR 0 364 1 393 308 88 85 chr15 29733658 29734191 -71646330 - L1 LINE L1 -1826 4320 3748 2422 48 3 0 chr15 29734191 29734482 -71646039 - AluY SINE Alu -19 292 1 393 308 88 85 chr15 29734482 29734684 -71645837 - L1 LINE L1 -2398 3748 3548 575 122 11 3 chr15 29734902 29735009 -71645512 - L1MA9 LINE L1 -199 6092 5987 23 108 0 0 chr15 29735308 29735401 -71645120 + AT_rich Low_complexity Low_complexity 1 93 0 354 45 0 0 chr15 29735525 29735569 -71644952 + (TA)n Simple_repeat Simple_repeat 1 44 0 727 224 6 19 chr15 29735659 29735815 -71644706 - MSTD LTR MaLR 0 396 243 520 119 0 48 chr15 29735898 29735982 -71644539 - MSTD LTR MaLR -315 81 2 223 312 65 13 chr15 29737065 29737142 -71643379 + L2 LINE L2 3187 3267 -5 700 278 89 57 chr15 29737163 29737566 -71642955 + L2 LINE L2 2305 2720 -594 2193 245 82 35 chr15 29737608 29738432 -71642089 + L1MEc LINE L1 304 1166 -5230 2324 47 3 3 chr15 29739058 29739354 -71641167 - AluY SINE Alu -15 296 1 209 89 36 36 chr15 29740625 29740681 -71639840 + CT-rich Low_complexity Low_complexity 1 56 0 2680 249 30 82 chr15 29740743 29741250 -71639271 + L1MC4 LINE L1 6635 7056 -986 2328 43 10 7 chr15 29741250 29741555 -71638966 - AluY SINE Alu -5 306 1 2680 249 30 82 chr15 29741555 29742143 -71638378 + L1MC4 LINE L1 7056 7673 -369 2265 26 0 7 chr15 29742730 29743000 -71637521 + AluY SINE Alu 41 308 -3 297 227 39 0 chr15 29744711 29744864 -71635657 + (TTA)n Simple_repeat Simple_repeat 1 158 0 237 300 64 21 chr15 29745180 29745320 -71635201 - L1ME2 LINE L1 -15 6149 6004 * 333 145 0 0 chr15 29745318 29745394 -71635127 + (TA)n Simple_repeat Simple_repeat 1 76 0 * 380 261 19 38 chr15 29745379 29745484 -71635037 + L1MC4 LINE L1 6571 6702 -1139 3617 228 52 56 chr15 29745506 29745522 -71634999 - L1ME2 LINE L1 -175 5991 5976 1601 72 0 0 chr15 29745522 29745715 -71634806 - AluSq SINE Alu -51 262 70 3617 228 52 56 chr15 29745715 29747812 -71632709 - L1ME2 LINE L1 -190 5976 3898 2857 19 0 0 chr15 29747964 29748282 -71632239 + AluYb8 SINE Alu 1 318 0 295 154 15 46 chr15 29748602 29748667 -71631854 - L2 LINE L2 -1 3312 3250 21 36 0 0 chr15 29749176 29749204 -71631317 + AT_rich Low_complexity Low_complexity 1 28 0 2267 53 3 3 chr15 29749574 29749882 -71630639 - AluSp SINE Alu 0 308 1 23 0 0 0 chr15 29750731 29750754 -71629767 + AT_rich Low_complexity Low_complexity 1 23 0 1277 39 0 0 chr15 29750754 29750909 -71629612 - L1PA4 LINE L1 -3 6152 5998 5392 77 25 9 chr15 29752086 29752861 -71627660 - L1PA8A LINE L1 -4 6127 5341 3421 219 35 55 chr15 29753435 29755304 -71625217 + L1MC3 LINE L1 3995 5899 -247 2215 103 3 3 chr15 29755304 29755595 -71624926 + AluSg SINE Alu 1 291 -19 3421 219 35 55 chr15 29755595 29755898 -71624623 + L1MC3 LINE L1 5899 5295 -851 2084 86 11 4 chr15 29755898 29756177 -71624344 + AluSq SINE Alu 1 281 -32 3421 219 35 55 chr15 29756177 29756279 -71624242 + L1MC3 LINE L1 5294 5396 -750 1365 184 44 29 chr15 29756311 29756326 -71624195 + L1MC3 LINE L1 6840 6853 -932 210 71 0 0 chr15 29756326 29756354 -71624167 + (CAAAG)n Simple_repeat Simple_repeat 2 29 0 1365 184 44 29 chr15 29756354 29756681 -71623840 + L1MC3 LINE L1 6853 7187 -598 2748 88 21 19 chr15 29756688 29757118 -71623403 + MLT2A1 LTR ERVL 14 444 0 2954 172 17 3 chr15 29757121 29757707 -71622814 + L1MC3 LINE L1 7184 7777 -8 203 365 141 0 chr15 29758267 29758423 -71622098 + L2 LINE L2 1700 1877 -1437 340 279 41 34 chr15 29758723 29758870 -71621651 + L2 LINE L2 2616 2763 -551 521 293 37 16 chr15 29758928 29759170 -71621351 - LTR16C LTR ERVL -58 433 187 291 281 21 10 chr15 29759400 29759496 -71621025 - LTR33 LTR ERVL 0 521 425 344 324 34 0 chr15 29759594 29759742 -71620779 - LTR33 LTR ERVL -256 265 113 423 277 8 25 chr15 29759844 29759963 -71620558 + L2 LINE L2 3190 3306 -7 1433 273 36 11 chr15 29760659 29761099 -71619422 + MLT1C LTR MaLR 17 467 0 2349 93 0 3 chr15 29761186 29761488 -71619033 - AluSq SINE Alu -12 301 1 358 304 32 16 chr15 29761754 29761879 -71618642 - L2 LINE L2 -12 3301 3175 195 363 27 51 chr15 29761934 29762270 -71618251 - L2 LINE L2 -534 2780 2453 1255 167 11 61 chr15 29762563 29762826 -71617695 + AluJo SINE Alu 44 293 -19 36 53 0 0 chr15 29763044 29763101 -71617420 + AT_rich Low_complexity Low_complexity 1 57 0 4957 168 14 13 chr15 29764679 29765654 -71614867 - L1MA9 LINE L1 0 6312 5337 286 111 0 0 chr15 29765654 29765699 -71614822 + L1PA3 LINE L1 6109 6153 -2 603 214 54 0 chr15 29765717 29765885 -71614636 - L1MA9 LINE L1 -795 5351 5175 247 308 83 15 chr15 29766590 29766856 -71613665 - L1ME3A LINE L1 -234 5936 5653 186 103 0 0 chr15 29766869 29766898 -71613623 + (TATATG)n Simple_repeat Simple_repeat 1 29 0 312 246 117 84 chr15 29766952 29767131 -71613390 - L1ME LINE L1 -5045 1025 841 380 250 139 5 chr15 29767169 29767325 -71613196 + MER3 DNA MER1_type 9 131 -78 1589 189 7 13 chr15 29767417 29767719 -71612802 + AluJb SINE Alu 6 305 -7 246 275 201 31 chr15 29767897 29768221 -71612300 - L1ME LINE L1 -224 5897 5519 2015 44 4 55 chr15 29768383 29768655 -71611866 - AluY SINE Alu -14 297 40 465 320 40 33 chr15 29769350 29769650 -71610871 + LTR16A1 LTR ERVL 147 448 -9 387 328 122 3 chr15 29770695 29771024 -71609497 + L1MC/D LINE L1 5454 5821 -1987 1909 108 7 25 chr15 29772146 29772424 -71608097 + AluSc SINE Alu 35 307 -2 1457 56 0 20 chr15 29773008 29773206 -71607315 - L1PA5 LINE L1 -1 6153 5960 234 91 0 0 chr15 29773753 29773786 -71606735 + (TG)n Simple_repeat Simple_repeat 1 33 0 24 91 0 0 chr15 29775383 29775449 -71605072 + AT_rich Low_complexity Low_complexity 1 66 0 234 0 0 0 chr15 29775989 29776015 -71604506 + (CA)n Simple_repeat Simple_repeat 2 27 0 29 47 0 0 chr15 29776569 29776612 -71603909 + AT_rich Low_complexity Low_complexity 1 43 0 284 284 15 0 chr15 29776648 29776715 -71603806 + L2 LINE L2 3227 3294 -19 17185 42 2 0 chr15 29777939 29780858 -71599663 + L1PA5 LINE L1 3246 6147 -7 303 241 205 0 chr15 29780871 29780983 -71599538 + L1M4 LINE L1 4487 4621 -1525 3228 26 0 0 chr15 29781026 29781404 -71599117 + L1PA5 LINE L1 5770 6147 -7 198 0 0 0 chr15 29782050 29782072 -71598449 + (A)n Simple_repeat Simple_repeat 1 22 0 317 102 17 0 chr15 29783679 29783738 -71596783 + (CCG)n Simple_repeat Simple_repeat 1 60 0 435 276 0 15 chr15 29783778 29783912 -71596609 + (CCG)n Simple_repeat Simple_repeat 3 134 0 5151 101 5 4 chr15 29784464 29785217 -71595304 + L1PA13 LINE L1 5405 6158 -5 1661 111 111 0 chr15 29785425 29785686 -71594835 - AluSg SINE Alu -20 290 1 24 77 0 0 chr15 29787528 29787580 -71592941 + GC_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr15 29791990 29792019 -71588502 + AT_rich Low_complexity Low_complexity 1 29 0 1266 303 96 57 chr15 29792936 29794005 -71586516 - L2 LINE L2 0 3313 2183 207 0 0 0 chr15 29794653 29794676 -71585845 + (TC)n Simple_repeat Simple_repeat 1 23 0 237 260 0 0 chr15 29795632 29795682 -71584839 + L2 LINE L2 2271 2320 -994 198 360 36 36 chr15 29795819 29795930 -71584591 + MIR SINE MIR 16 126 -82 248 231 198 44 chr15 29796695 29796786 -71583735 + L2 LINE L2 3121 3225 -47 4612 176 33 28 chr15 29798496 29799471 -71581050 - L1MC2 LINE L1 -8 6336 5357 1854 114 20 17 chr15 29799519 29799817 -71580704 - AluSx SINE Alu -13 299 1 26 50 0 0 chr15 29799924 29799964 -71580557 + AT_rich Low_complexity Low_complexity 1 40 0 311 236 135 0 chr15 29800024 29800113 -71580408 - L1 LINE L1 -1601 4545 4445 943 171 23 0 chr15 29800219 29800394 -71580127 - L1PA16 LINE L1 -4 6162 5984 2136 119 0 3 chr15 29800594 29800904 -71579617 + AluSc SINE Alu 1 309 0 28 61 0 0 chr15 29801284 29801333 -71579188 + AT_rich Low_complexity Low_complexity 1 49 0 2391 187 166 33 chr15 29801413 29801593 -71578928 + Charlie1a DNA MER1_type 67 222 -2539 1789 147 14 3 chr15 29801593 29801878 -71578643 + AluJb SINE Alu 9 296 -16 2391 187 166 33 chr15 29801878 29802446 -71578075 + Charlie1a DNA MER1_type 222 914 -541 1183 158 0 37 chr15 29802450 29802665 -71577856 + AluJb SINE Alu 87 293 -19 249 57 0 0 chr15 29802667 29802702 -71577819 + (TA)n Simple_repeat Simple_repeat 2 36 0 892 183 245 9 chr15 29802722 29803045 -71577476 + Charlie1a DNA MER1_type 1057 1455 0 2257 95 0 0 chr15 29803519 29803815 -71576706 + AluSq SINE Alu 1 296 -17 228 250 90 30 chr15 29804172 29804272 -71576249 + L1ME4a LINE L1 5972 6077 -44 2024 131 3 0 chr15 29805114 29805419 -71575102 + AluSg SINE Alu 1 306 -4 192 40 0 0 chr15 29805656 29805681 -71574840 + (CA)n Simple_repeat Simple_repeat 2 26 0 308 277 0 0 chr15 29806760 29806825 -71573696 + C-rich Low_complexity Low_complexity 1 65 0 283 254 92 2 chr15 29807055 29807175 -71573346 - L1ME LINE L1 -363 5799 5668 444 19 0 0 chr15 29809144 29809197 -71571324 + (TG)n Simple_repeat Simple_repeat 2 54 0 2113 120 3 0 chr15 29809758 29810058 -71570463 - AluSx SINE Alu -11 301 1 2282 141 37 0 chr15 29810569 29810952 -71569569 + L1MB3 LINE L1 5787 6183 0 1236 139 15 105 chr15 29811069 29811336 -71569185 - MSTB LTR MaLR -183 243 1 2045 162 31 10 chr15 29812799 29813182 -71567339 - L1MB5 LINE L1 -1 6173 5783 548 126 11 0 chr15 29813183 29813270 -71567251 - AluSg/x SINE Alu -6 304 217 546 213 0 0 chr15 29813278 29813386 -71567135 - L1MB5 LINE L1 -389 5785 5678 620 227 142 98 chr15 29813421 29813941 -71566580 - MLT1H1 LTR MaLR 0 555 19 242 215 131 42 chr15 29813968 29814182 -71566339 - HAL1 LINE L1 -1449 1058 826 1876 141 7 3 chr15 29814251 29814568 -71565953 + AluJo SINE Alu 1 312 0 461 321 69 87 chr15 29814722 29815170 -71565351 - HAL1 LINE L1 -2045 462 23 989 201 47 23 chr15 29815535 29815749 -71564772 + MER20 DNA MER1_type 1 219 0 207 0 0 0 chr15 29815864 29815887 -71564634 + (A)n Simple_repeat Simple_repeat 1 23 0 2203 89 3 3 chr15 29816639 29816943 -71563578 - AluSq SINE Alu -9 304 1 341 64 0 6 chr15 29817164 29817250 -71563271 - AluSp/q SINE Alu 0 317 245 2112 164 33 14 chr15 29817457 29817877 -71562644 + L1MB3 LINE L1 5754 6181 -2 1270 186 0 0 chr15 29819981 29820201 -71560320 + AluJb SINE Alu 73 292 -20 210 308 64 0 chr15 29820352 29820430 -71560091 + MIR SINE MIR 15 97 -165 652 326 76 64 chr15 29822491 29822556 -71557965 + L1ME4a LINE L1 4589 4652 -1494 1607 162 51 0 chr15 29822556 29822852 -71557669 + AluJb SINE Alu 1 311 -1 652 326 76 64 chr15 29822852 29823431 -71557090 + L1ME4a LINE L1 4652 5241 -905 417 323 47 35 chr15 29823441 29823934 -71556587 + L1ME4a LINE L1 5256 5755 -366 227 178 27 171 chr15 29824031 29824177 -71556344 + L1ME4a LINE L1 5891 6015 -106 694 193 0 22 chr15 29824481 29824616 -71555905 + FLAM_A SINE Alu 1 132 -1 2319 85 3 0 chr15 29824769 29825076 -71555445 + AluY SINE Alu 1 308 -3 1770 137 10 17 chr15 29825816 29826116 -71554405 - AluJo SINE Alu -14 298 1 483 18 0 0 chr15 29829017 29829073 -71551448 + (CA)n Simple_repeat Simple_repeat 1 56 0 2273 157 218 6 chr15 29829074 29829565 -71550956 - MER7C DNA MER2_type -5 597 3 733 257 225 17 chr15 29831301 29831647 -71548874 - L2 LINE L2 0 3313 2896 29 60 0 0 chr15 29834931 29834981 -71545540 + GC_rich Low_complexity Low_complexity 1 50 0 6857 47 8 14 chr15 29837102 29838417 -71542104 + L1PA5 LINE L1 4899 6170 -2 349 380 23 12 chr15 29838748 29838919 -71541602 - MIR SINE MIR 0 262 90 2300 65 19 13 chr15 29838923 29839230 -71541291 - AluY SINE Alu -1 310 2 2020 122 45 50 chr15 29839788 29840165 -71540356 - THE1C LTR MaLR 0 375 1 327 348 39 26 chr15 29840237 29840392 -71540129 - MIR SINE MIR -88 174 18 1753 151 29 26 chr15 29840674 29840985 -71539536 - AluSx SINE Alu 0 312 1 1428 51 0 6 chr15 29841456 29841633 -71538888 + L1PA6 LINE L1 5972 6147 -7 1909 287 42 44 chr15 29842011 29842338 -71538183 + L2 LINE L2 1852 2178 -1136 1171 171 9 48 chr15 29842338 29842566 -71537955 - MER20 DNA MER1_type 0 219 1 1909 287 42 44 chr15 29842566 29843053 -71537468 + L2 LINE L2 2178 2664 -650 210 37 0 0 chr15 29843147 29843174 -71537347 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 307 325 37 18 chr15 29843234 29843257 -71537264 + L2 LINE L2 2709 2730 -584 2075 117 7 0 chr15 29843257 29843555 -71536966 - AluSg SINE Alu 0 310 11 307 325 37 18 chr15 29843555 29843694 -71536827 + L2 LINE L2 2730 2874 -440 505 295 4 88 chr15 29843826 29843912 -71536609 - L1M4 LINE L1 -1016 5130 5038 1569 74 5 18 chr15 29843912 29844129 -71536392 - AluSp SINE Alu -9 304 91 505 295 4 88 chr15 29844129 29844269 -71536252 - L1M4 LINE L1 -1108 5038 4923 1965 242 73 27 chr15 29844270 29844305 -71536216 - L1M4 LINE L1 -1577 4569 4537 2445 62 0 0 chr15 29844305 29844611 -71535910 - AluY SINE Alu -5 306 1 1965 242 73 27 chr15 29844611 29845324 -71535197 - L1M4 LINE L1 -1609 4537 3786 412 303 51 6 chr15 29845364 29845539 -71534982 + L1ME4a LINE L1 5509 5691 -430 357 294 110 61 chr15 29845657 29845872 -71534649 + L1ME4a LINE L1 5864 6094 -27 1593 211 29 29 chr15 29845872 29846246 -71534275 - MLT1A2 LTR MaLR 0 374 1 357 294 110 61 chr15 29846246 29846275 -71534246 + L1ME4a LINE L1 6094 6120 -1 2052 121 3 6 chr15 29846740 29847053 -71533468 + AluSx SINE Alu 1 312 0 1107 178 123 105 chr15 29847512 29847961 -71532560 - MSTB2 LTR MaLR 0 457 1 198 0 0 0 chr15 29847990 29848012 -71532509 + (TA)n Simple_repeat Simple_repeat 2 23 0 284 250 0 0 chr15 29848012 29848096 -71532425 - L1MC4 LINE L1 -1339 6703 6620 212 152 43 0 chr15 29848121 29848167 -71532354 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 1153 119 161 23 chr15 29848497 29848715 -71531806 - AluSx SINE Alu -64 248 1 21 0 0 0 chr15 29849118 29849139 -71531382 + AT_rich Low_complexity Low_complexity 1 21 0 4432 161 44 27 chr15 29849279 29849445 -71531076 - L1MA8 LINE L1 -4 6287 6125 180 0 0 0 chr15 29849445 29849465 -71531056 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1971 124 3 11 chr15 29849469 29849751 -71530770 - AluSx SINE Alu -32 280 1 4432 161 44 27 chr15 29849751 29850528 -71529993 - L1MA8 LINE L1 -168 6123 5323 430 265 51 0 chr15 29850646 29850763 -71529758 - L2 LINE L2 0 3313 3191 330 271 31 0 chr15 29851612 29851708 -71528813 - LTR33A LTR ERVL -361 162 64 1212 326 55 8 chr15 29852375 29852995 -71527526 - ERVL LTR ERVL -395 5369 4721 24 32 0 0 chr15 29853124 29853155 -71527366 + AT_rich Low_complexity Low_complexity 1 31 0 336 242 97 66 chr15 29853327 29853554 -71526967 - HAL1 LINE L1 0 2507 2274 23 0 0 0 chr15 29854666 29854689 -71525832 + AT_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chr15 29854716 29854760 -71525761 + AT_rich Low_complexity Low_complexity 1 44 0 2189 128 31 6 chr15 29855464 29855824 -71524697 - L1PA11 LINE L1 -4 6170 5802 24 32 0 0 chr15 29856232 29856263 -71524258 + AT_rich Low_complexity Low_complexity 1 31 0 32 57 0 0 chr15 29857301 29857354 -71523167 + AT_rich Low_complexity Low_complexity 1 53 0 229 268 18 0 chr15 29858004 29858060 -71522461 - MIR SINE MIR -2 260 204 241 292 42 42 chr15 29858113 29858185 -71522336 - MIR SINE MIR -169 93 22 294 304 62 88 chr15 29858429 29858689 -71521832 + MIR SINE MIR 3 255 -7 259 182 0 18 chr15 29858947 29859002 -71521519 - MER112 DNA MER1_type -7 253 200 186 43 0 0 chr15 29859137 29859160 -71521361 + (TATG)n Simple_repeat Simple_repeat 2 24 0 212 145 133 24 chr15 29859319 29859402 -71521119 + (TTAAA)n Simple_repeat Simple_repeat 1 92 0 264 77 0 0 chr15 29859439 29859478 -71521043 + (CA)n Simple_repeat Simple_repeat 2 40 0 260 274 24 43 chr15 29859596 29859760 -71520761 + (CAGAGA)n Simple_repeat Simple_repeat 2 162 0 22 0 0 0 chr15 29861034 29861056 -71519465 + AT_rich Low_complexity Low_complexity 1 22 0 2061 115 3 16 chr15 29861653 29861957 -71518564 - AluSx SINE Alu -12 300 1 243 286 105 0 chr15 29862190 29862295 -71518226 - MIR SINE MIR -56 206 91 187 350 60 10 chr15 29862699 29862799 -71517722 + MER5B DNA MER1_type 24 128 -50 201 244 11 111 chr15 29864546 29864636 -71515885 + L2 LINE L2 3190 3270 -2 311 310 50 0 chr15 29866311 29866411 -71514110 + L1ME LINE L1 5719 5823 -298 201 236 18 36 chr15 29868122 29868177 -71512344 - MIR SINE MIR -63 145 92 1941 95 27 34 chr15 29870377 29870673 -71509848 + AluSx SINE Alu 3 296 -16 1894 111 28 3 chr15 29870673 29870962 -71509559 - AluSq SINE Alu -17 296 1 307 327 81 78 chr15 29871663 29871984 -71508537 + L1MDb LINE L1 376 697 -5712 468 0 0 0 chr15 29871989 29872041 -71508480 + (TC)n Simple_repeat Simple_repeat 2 53 0 387 0 0 0 chr15 29872040 29872083 -71508438 + (TG)n Simple_repeat Simple_repeat 2 44 0 * 349 275 138 9 chr15 29872377 29872486 -71508035 + MIR SINE MIR 14 136 -126 210 354 80 0 chr15 29873764 29873879 -71506642 + MIR SINE MIR 24 152 -56 1159 173 12 71 chr15 29873954 29874251 -71506270 + AluJo SINE Alu 44 325 0 183 234 16 62 chr15 29874252 29874316 -71506205 + MIR SINE MIR 194 254 -8 466 232 150 36 chr15 29874628 29874848 -71505673 - L1ME LINE L1 -382 5780 5536 2098 102 31 10 chr15 29874856 29875150 -71505371 - AluY SINE Alu -11 300 1 1941 179 0 0 chr15 29875339 29875651 -71504870 + AluJo SINE Alu 1 312 0 1920 147 0 0 chr15 29875668 29875985 -71504536 + AluSg SINE Alu 1 317 0 2010 190 15 12 chr15 29876032 29876068 -71504453 + L1 LINE L1 3297 3331 -2815 2279 104 0 0 chr15 29876068 29876376 -71504145 + AluY SINE Alu 1 308 -3 2010 190 15 12 chr15 29876376 29876819 -71503702 + L1 LINE L1 3331 3777 -2369 1557 166 3 21 chr15 29877662 29877946 -71502575 + AluJo SINE Alu 10 288 -24 257 269 24 19 chr15 29877996 29878101 -71502420 + MIR3 SINE MIR 65 170 -38 294 29 0 0 chr15 29880110 29880145 -71500376 + (CA)n Simple_repeat Simple_repeat 1 35 0 27 0 0 0 chr15 29882273 29882300 -71498221 + AT_rich Low_complexity Low_complexity 1 27 0 6233 20 0 0 chr15 29884596 29885350 -71495171 - L1P LINE L1 -1490 4656 3903 3679 209 37 4 chr15 29885657 29886621 -71493900 + L1 LINE L1 2761 3756 -2390 611 322 90 4 chr15 29886767 29887000 -71493521 + MIR SINE MIR 8 260 -2 21 0 0 0 chr15 29887290 29887311 -71493210 + AT_rich Low_complexity Low_complexity 1 21 0 3522 169 129 96 chr15 29887856 29888328 -71492193 + L1MC3 LINE L1 6613 7068 -717 249 233 70 23 chr15 29888328 29888414 -71492107 + MLT1F1 LTR MaLR 35 124 -443 3522 169 129 96 chr15 29888414 29888989 -71491532 + L1MC3 LINE L1 7068 7782 -3 10670 76 1 0 chr15 29889240 29890706 -71489815 + L1P LINE L1 649 2116 -4030 41 58 0 0 chr15 29940892 29940961 -71439560 + AT_rich Low_complexity Low_complexity 1 69 0 229 217 14 0 chr15 29941161 29941230 -71439291 + (TA)n Simple_repeat Simple_repeat 2 71 0 25 31 0 0 chr15 29941326 29941358 -71439163 + AT_rich Low_complexity Low_complexity 1 32 0 225 0 0 0 chr15 29942583 29942608 -71437913 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 234 276 40 0 chr15 29943481 29943557 -71436964 - L1M1 LINE L1 -725 5575 5497 22 70 0 0 chr15 29943674 29943717 -71436804 + AT_rich Low_complexity Low_complexity 1 43 0 355 211 43 130 chr15 29944335 29944520 -71436001 + L2 LINE L2 3144 3312 -1 24 32 0 0 chr15 29945201 29945232 -71435289 + AT_rich Low_complexity Low_complexity 1 31 0 224 200 15 0 chr15 29945873 29945938 -71434583 + GA-rich Low_complexity Low_complexity 3 68 0 1357 152 5 5 chr15 29946215 29946426 -71434095 - AluJo SINE Alu -78 234 24 685 226 81 68 chr15 29946433 29946686 -71433835 - LTR37A LTR ERV1 -1 425 166 1855 162 0 7 chr15 29946686 29946982 -71433539 - AluJb SINE Alu -18 294 1 685 226 81 68 chr15 29946982 29947038 -71433483 - LTR37A LTR ERV1 -260 166 112 1938 134 37 3 chr15 29947133 29947280 -71433241 - AluJo SINE Alu -4 308 167 234 0 0 0 chr15 29947280 29947306 -71433215 + (CA)n Simple_repeat Simple_repeat 2 27 0 1938 134 37 3 chr15 29947306 29947456 -71433065 - AluJo SINE Alu -145 167 1 30 59 0 0 chr15 29948615 29948666 -71431855 + AT_rich Low_complexity Low_complexity 1 51 0 2242 125 0 0 chr15 29948725 29949022 -71431499 - AluSx SINE Alu -15 297 1 30 45 0 0 chr15 29949031 29949075 -71431446 + AT_rich Low_complexity Low_complexity 1 44 0 3471 130 24 49 chr15 29949569 29950185 -71430336 - LTR26 LTR ERV1 0 603 3 2201 67 0 0 chr15 29950926 29951194 -71429327 + AluY SINE Alu 35 302 -9 702 239 11 17 chr15 29951355 29951531 -71428990 - MER5B DNA MER1_type -3 175 1 553 129 35 190 chr15 29951688 29951920 -71428601 - MER20 DNA MER1_type -2 217 22 548 249 77 22 chr15 29952736 29952917 -71427604 - MIR SINE MIR -2 260 70 2524 198 6 8 chr15 29952933 29953449 -71427072 - MER119 DNA MER1_type 0 583 69 241 268 37 12 chr15 29953539 29953621 -71426900 + L2 LINE L2 3171 3254 -18 424 290 48 5 chr15 29954299 29954485 -71426036 + L1MC/D LINE L1 5614 5807 -2001 643 214 0 15 chr15 29954487 29954618 -71425903 - FLAM_A SINE Alu -4 129 1 1095 220 9 5 chr15 29954636 29954854 -71425667 - MER58A DNA MER1_type -1 223 5 574 315 20 30 chr15 29956349 29956549 -71423972 - MIR3 SINE MIR -9 199 2 2539 51 0 22 chr15 29956922 29957237 -71423284 - AluY SINE Alu -3 308 1 183 80 0 0 chr15 29957315 29957340 -71423181 + (ATG)n Simple_repeat Simple_repeat 2 26 0 514 183 0 124 chr15 29957345 29957498 -71423023 - MIR SINE MIR -10 252 119 246 284 216 0 chr15 29957588 29957704 -71422817 - MIR3 SINE MIR -1 207 67 313 233 128 0 chr15 29957855 29957941 -71422580 + MIR SINE MIR 88 184 -78 4927 36 2 2 chr15 29958673 29959263 -71421258 - L1PA5 LINE L1 0 6154 5565 189 0 0 0 chr15 29959910 29959931 -71420590 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 299 305 79 35 chr15 29960046 29960249 -71420272 - MIR SINE MIR -46 216 5 328 292 161 12 chr15 29960398 29960559 -71419962 + MIR SINE MIR 73 257 -5 230 172 53 189 chr15 29960686 29960855 -71419666 + LTR37A LTR ERV1 39 184 -242 648 164 15 8 chr15 29960869 29961003 -71419518 + LTR37A LTR ERV1 290 424 -2 3828 123 5 41 chr15 29961681 29962338 -71418183 + MER41B LTR ERV1 1 633 -2 216 227 0 0 chr15 29962760 29962804 -71417717 - L2 LINE L2 -209 3063 3020 1015 309 111 38 chr15 29962851 29963502 -71417019 - L2 LINE L2 -720 2594 1897 261 213 33 0 chr15 29963502 29963563 -71416958 - MLT2D LTR ERVL 0 520 458 1674 143 23 27 chr15 29963620 29963920 -71416601 - MLT2D LTR ERVL -50 364 66 525 125 10 10 chr15 29963953 29964049 -71416472 - MLT2D LTR ERVL -318 96 1 245 307 11 0 chr15 29964050 29964138 -71416383 - L2 LINE L2 -1414 1900 1812 555 246 8 0 chr15 29964155 29964273 -71416248 + MER5B DNA MER1_type 7 125 -53 442 211 11 22 chr15 29964339 29964429 -71416092 - MER5A DNA MER1_type -92 97 9 328 341 38 34 chr15 29964423 29964687 -71415834 - L2 LINE L2 -1503 1811 1547 * 277 381 46 55 chr15 29964722 29965089 -71415432 - L2 LINE L2 -353 2961 2598 357 24 0 0 chr15 29965267 29965309 -71415212 + (GA)n Simple_repeat Simple_repeat 2 43 0 351 278 74 14 chr15 29965678 29965854 -71414667 + MIR SINE MIR 15 245 -17 1151 194 29 7 chr15 29966363 29966636 -71413885 + L1MD2 LINE L1 3569 3847 -2299 356 130 0 0 chr15 29966638 29966707 -71413814 + L1MB4 LINE L1 6112 6180 0 4557 215 29 29 chr15 29966708 29968182 -71412339 + L1MD2 LINE L1 4212 5706 -653 1138 73 7 0 chr15 29968182 29968333 -71412188 - L1PA5 LINE L1 -6 6148 5997 4557 215 29 29 chr15 29968333 29968960 -71411561 + L1MD2 LINE L1 5706 6331 -28 2897 195 25 62 chr15 29968972 29969087 -71411434 + L1ME1 LINE L1 5186 5304 -1008 937 178 6 6 chr15 29969087 29969250 -71411271 + FAM SINE Alu 5 167 -8 2897 195 25 62 chr15 29969250 29970142 -71410379 + L1ME1 LINE L1 5304 6288 -24 1744 141 43 7 chr15 29970393 29970670 -71409851 - AluJo SINE Alu -25 287 1 195 42 0 0 chr15 29970827 29970851 -71409670 + (TA)n Simple_repeat Simple_repeat 2 25 0 259 277 43 90 chr15 29972233 29972373 -71408148 - L2 LINE L2 -101 3212 3082 1678 134 52 4 chr15 29972373 29972642 -71407879 - AluJo SINE Alu -20 292 11 259 277 43 90 chr15 29972642 29972689 -71407832 - L2 LINE L2 -231 3082 3034 527 278 82 12 chr15 29973004 29973259 -71407262 - Charlie7 DNA MER1_type -1912 700 428 398 256 73 22 chr15 29974417 29974554 -71405967 - MLT1L LTR MaLR -337 278 135 1626 143 13 57 chr15 29974608 29974908 -71405613 + AluJb SINE Alu 1 287 -25 235 298 81 40 chr15 29975022 29975146 -71405375 - L2 LINE L2 -241 3031 2903 251 170 0 0 chr15 29976671 29976718 -71403803 + MER4B-int LTR ERV1 1150 1196 -5562 1898 146 0 3 chr15 29976743 29977030 -71403491 - AluJb SINE Alu -26 286 1 756 217 133 4 chr15 29977826 29978052 -71402469 + MLT1L LTR MaLR 357 611 -4 303 323 49 61 chr15 29978384 29978548 -71401973 + MIR SINE MIR 66 227 -35 374 183 0 75 chr15 29978783 29978876 -71401645 - MER103 DNA DNA -70 96 11 338 330 75 64 chr15 29978960 29979427 -71401094 + L2 LINE L2 2429 2900 -414 331 284 19 65 chr15 29980778 29980933 -71399588 - MIR3 SINE MIR -1 207 60 223 396 27 9 chr15 29981417 29981528 -71398993 + L2 LINE L2 3132 3244 -28 282 274 76 3 chr15 29981529 29981682 -71398839 + MER63A DNA MER1_type 2 210 0 755 345 24 23 chr15 29982082 29982583 -71397938 - L2 LINE L2 -226 3046 2551 180 214 0 0 chr15 29982607 29982649 -71397872 - L2 LINE L2 -887 2427 2386 851 288 130 39 chr15 29982678 29983223 -71397298 - L2 LINE L2 -1190 2124 1530 509 297 78 18 chr15 29983527 29983746 -71396775 - L2 LINE L2 -1789 1525 1294 317 243 14 0 chr15 29984059 29984133 -71396388 + MER5C DNA MER1_type 1 75 -249 482 254 66 55 chr15 29984318 29984574 -71395947 - MER112 DNA MER1_type 0 260 2 474 191 59 29 chr15 29985005 29985141 -71395380 - MER53 DNA DNA 0 189 50 * 504 102 110 25 chr15 29985138 29985256 -71395265 - MER53 DNA DNA -61 128 1 265 125 0 71 chr15 29985267 29985323 -71395198 - MER69 DNA AcHobo -29 2497 2446 * 432 273 14 7 chr15 29985316 29985459 -71395062 - MER69 DNA AcHobo -1079 147 4 214 179 26 0 chr15 29985619 29985658 -71394863 + GA-rich Low_complexity Low_complexity 4 43 0 275 311 13 7 chr15 29985664 29985815 -71394706 + Charlie2 DNA MER1_type 129 280 -2582 574 212 42 16 chr15 29985993 29986186 -71394335 + Charlie2a DNA MER1_type 1465 1662 -1200 1094 157 10 29 chr15 29986268 29986472 -71394049 + AluJo SINE Alu 1 200 -112 204 40 0 0 chr15 29986472 29986497 -71394024 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 235 327 153 0 chr15 29987516 29987666 -71392855 + MIR SINE MIR 88 260 -2 2114 194 33 98 chr15 29988579 29989245 -71391276 + MER63C DNA MER1_type 1 623 -307 890 110 0 0 chr15 29989246 29989364 -71391157 + AluSc SINE Alu 186 303 -6 732 162 112 20 chr15 29989366 29989563 -71390958 + MER63C DNA MER1_type 617 831 -99 434 72 0 14 chr15 29989564 29989633 -71390888 - Alu SINE Alu -7 305 238 807 176 0 8 chr15 29989653 29989778 -71390743 - FLAM_C SINE Alu -19 124 1 295 257 40 10 chr15 29989778 29989879 -71390642 + MER63C DNA MER1_type 823 926 -4 390 305 61 12 chr15 29990000 29990164 -71390357 + MLT1L LTR MaLR 153 324 -291 2216 116 13 0 chr15 29990480 29990782 -71389739 + AluSx SINE Alu 1 306 -6 781 297 38 4 chr15 29990814 29991053 -71389468 + MIR SINE MIR 15 261 -1 320 0 0 24 chr15 29991240 29991281 -71389240 + (TTG)n Simple_repeat Simple_repeat 2 41 0 590 328 96 63 chr15 29991656 29992148 -71388373 + L2 LINE L2 2523 3028 -285 317 339 23 39 chr15 29992202 29992332 -71388189 + L2 LINE L2 3185 3312 -1 441 81 0 0 chr15 29992390 29992452 -71388069 + (CA)n Simple_repeat Simple_repeat 1 62 0 26 0 0 0 chr15 29992459 29992485 -71388036 + AT_rich Low_complexity Low_complexity 1 26 0 1311 241 59 14 chr15 29992516 29993162 -71387359 - L1MEc LINE L1 -2875 3340 2622 1731 148 96 42 chr15 29993197 29993259 -71387262 - LTR47A LTR ERVL -46 406 349 2438 65 0 31 chr15 29993259 29993580 -71386941 + AluY SINE Alu 1 311 0 1731 148 96 42 chr15 29993580 29993902 -71386619 - LTR47A LTR ERVL -103 349 1 2436 244 48 28 chr15 29993905 29994656 -71385865 - L1MEc LINE L1 -3612 2603 1869 1772 187 42 34 chr15 29994656 29995041 -71385480 + MLT1B LTR MaLR 1 388 -2 2436 244 48 28 chr15 29995041 29995183 -71385338 - L1MEc LINE L1 -4346 1869 1731 2798 93 0 0 chr15 29995183 29995547 -71384974 + THE1B LTR MaLR 1 364 0 2436 244 48 28 chr15 29995547 29995794 -71384727 - L1MEc LINE L1 -4484 1731 1477 793 53 26 0 chr15 29995795 29995909 -71384612 + (TTTC)n Simple_repeat Simple_repeat 1 117 0 621 238 91 27 chr15 29996004 29996204 -71384317 + MIR SINE MIR 13 211 -51 354 263 63 33 chr15 29996264 29996593 -71383928 - LTR67 LTR ERVL -29 528 151 3171 158 140 3 chr15 29996945 29997567 -71382954 - MER39 LTR ERV1 0 707 1 22 0 0 0 chr15 29999136 29999158 -71381363 + AT_rich Low_complexity Low_complexity 1 22 0 491 296 169 5 chr15 29999163 29999376 -71381145 - MIR SINE MIR -11 251 4 6466 85 19 18 chr15 29999532 30000642 -71379879 + L1PA14 LINE L1 5051 6161 0 2454 68 0 16 chr15 30000765 30001075 -71379446 - AluY SINE Alu -2 309 5 256 196 20 0 chr15 30001321 30001372 -71379149 - L2 LINE L2 0 3313 3262 2716 146 95 33 chr15 30002431 30002980 -71377541 + MER34C LTR ERV1 1 583 -2 2461 153 15 0 chr15 30003172 30003565 -71376956 - MER57A LTR ERV1 -4 399 1 188 229 0 0 chr15 30004016 30004051 -71376470 - L2 LINE L2 -16 3297 3263 1449 153 80 4 chr15 30004236 30004485 -71376036 - AluJo SINE Alu -44 268 1 180 348 79 11 chr15 30004609 30004698 -71375823 - MIR3 SINE MIR -7 201 107 2176 109 0 10 chr15 30004703 30005005 -71375516 - AluSx SINE Alu -13 299 1 190 293 81 40 chr15 30006250 30006349 -71374172 - MIR SINE MIR -63 145 43 402 162 0 0 chr15 30006434 30006508 -71374013 + CT-rich Low_complexity Low_complexity 3 76 0 1315 162 81 84 chr15 30006512 30006809 -71373712 - AluJo SINE Alu -16 296 1 402 214 12 0 chr15 30008020 30008104 -71372417 + FAM SINE Alu 85 169 -16 258 229 9 73 chr15 30009414 30009523 -71370998 + L1ME4a LINE L1 5944 6045 -76 1658 174 4 4 chr15 30009574 30009844 -71370677 + AluJb SINE Alu 1 270 -42 243 0 0 0 chr15 30009844 30009871 -71370650 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 222 229 0 0 chr15 30012053 30012101 -71368420 - L2 LINE L2 -3 3310 3263 219 354 56 13 chr15 30012351 30012489 -71368032 - MIR SINE MIR -58 150 40 195 42 0 0 chr15 30013433 30013457 -71367064 + (A)n Simple_repeat Simple_repeat 1 24 0 192 77 0 0 chr15 30015624 30015650 -71364871 + (TC)n Simple_repeat Simple_repeat 2 27 0 254 227 136 0 chr15 30015718 30015784 -71364737 - MIR SINE MIR -80 128 54 210 37 0 0 chr15 30016048 30016075 -71364446 + (TG)n Simple_repeat Simple_repeat 2 28 0 261 83 0 0 chr15 30017530 30017566 -71362955 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 616 184 0 142 chr15 30017732 30017798 -71362723 - MIR SINE MIR 0 262 188 1544 149 50 4 chr15 30017798 30018079 -71362442 - L1MB3 LINE L1 0 6183 5890 616 184 0 142 chr15 30018079 30018202 -71362319 - MIR SINE MIR -74 188 100 332 179 60 48 chr15 30019438 30019522 -71360999 - L1MA9 LINE L1 -1 6311 6227 2234 119 3 0 chr15 30019690 30020002 -71360519 - AluSq SINE Alu 0 313 1 405 353 95 22 chr15 30021697 30021929 -71358592 - MIR SINE MIR -13 249 1 317 263 13 0 chr15 30022766 30022842 -71357679 - MER5A DNA MER1_type -103 86 10 274 295 93 58 chr15 30023102 30023241 -71357280 + MER5B DNA MER1_type 2 145 -33 2261 179 69 18 chr15 30023533 30023968 -71356553 - MLT2B1 LTR ERVL -63 457 1 2159 109 3 0 chr15 30024087 30024370 -71356151 + AluSx SINE Alu 1 284 -28 22 0 0 0 chr15 30024371 30024393 -71356128 + AT_rich Low_complexity Low_complexity 1 22 0 576 116 0 0 chr15 30024920 30025006 -71355515 + L1MA9 LINE L1 5940 6025 -287 2239 109 7 0 chr15 30025029 30025332 -71355189 + AluSg SINE Alu 3 307 -3 183 211 53 0 chr15 30025849 30025887 -71354634 + MIR SINE MIR 196 235 -27 1086 193 14 5 chr15 30026139 30026346 -71354175 + MER3 DNA MER1_type 1 209 0 226 245 20 0 chr15 30026352 30026401 -71354120 + L2 LINE L2 3223 3272 0 1666 154 0 91 chr15 30027026 30027357 -71353164 - AluJb SINE Alu -3 309 9 1520 178 66 3 chr15 30027626 30027912 -71352609 + L1MB4 LINE L1 5862 6165 -15 220 353 95 9 chr15 30028335 30028451 -71352070 - L3b LINE CR1 -14 1569 1444 1812 164 3 3 chr15 30028469 30028762 -71351759 - AluJb SINE Alu -19 293 1 2011 247 104 14 chr15 30028963 30029538 -71350983 - MLT2E LTR ERVL -1 627 1 2184 64 0 48 chr15 30030004 30030328 -71350193 + AluY SINE Alu 1 310 0 1972 149 0 7 chr15 30030551 30030847 -71349674 + AluJo SINE Alu 1 294 -18 3614 157 16 38 chr15 30031444 30032196 -71348325 - L1MA4 LINE L1 0 6171 5400 375 299 85 23 chr15 30033467 30033644 -71346877 + MIR SINE MIR 52 239 -23 227 111 0 44 chr15 30034668 30034713 -71345808 + (TTCTCC)n Simple_repeat Simple_repeat 3 45 0 459 296 5 70 chr15 30034798 30035011 -71345510 + MIR SINE MIR 3 201 -61 254 320 144 0 chr15 30035028 30035125 -71345396 - MIR SINE MIR -69 139 29 1389 278 51 35 chr15 30035172 30035665 -71344856 + MLT1K LTR MaLR 16 516 -72 735 268 22 36 chr15 30036069 30036292 -71344229 - MIR SINE MIR -3 259 38 963 145 0 0 chr15 30036407 30036545 -71343976 - FAM SINE Alu -19 166 29 427 197 114 38 chr15 30036664 30036796 -71343725 + MIR SINE MIR 85 226 -36 243 88 0 0 chr15 30036798 30036832 -71343689 + (CAT)n Simple_repeat Simple_repeat 2 35 0 189 107 0 0 chr15 30036957 30036985 -71343536 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 288 227 52 52 chr15 30038089 30038186 -71342335 - HAL1b LINE L1 0 1348 1252 584 231 148 14 chr15 30038338 30038554 -71341967 - L1ME LINE L1 -315 5806 5562 1554 152 80 7 chr15 30038555 30038831 -71341690 - AluJo SINE Alu -16 296 1 181 298 0 0 chr15 30038877 30038924 -71341597 - MIR SINE MIR -138 124 78 1206 224 32 4 chr15 30040003 30040280 -71340241 + AluSx SINE Alu 1 285 -27 217 288 123 71 chr15 30040983 30041153 -71339368 - MER5A DNA MER1_type -2 187 9 280 336 67 34 chr15 30041425 30041574 -71338947 + MER5A DNA MER1_type 29 182 -7 1859 148 3 13 chr15 30042781 30043091 -71337430 + AluSx SINE Alu 1 307 -5 221 95 0 24 chr15 30043276 30043318 -71337203 + (ATTG)n Simple_repeat Simple_repeat 4 44 0 1464 122 5 0 chr15 30043318 30043515 -71337006 - AluSg/x SINE Alu -32 278 81 239 306 57 64 chr15 30043983 30044140 -71336381 - MIR SINE MIR -19 243 88 182 260 49 98 chr15 30044380 30044503 -71336018 + L2 LINE L2 3156 3272 0 181 191 127 32 chr15 30044702 30044765 -71335756 - MIR3 SINE MIR -130 78 10 2107 106 0 3 chr15 30045511 30045826 -71334695 + AluSx SINE Alu 1 314 0 4488 184 13 30 chr15 30045830 30046746 -71333775 - Tigger1 DNA MER2_type -357 2061 1161 2432 93 3 0 chr15 30047648 30047959 -71332562 - AluSx SINE Alu 0 312 1 877 270 40 29 chr15 30048014 30048292 -71332229 + ERVL LTR ERVL 4873 5153 -611 185 397 0 0 chr15 30048447 30048525 -71331996 + L2 LINE L2 3220 3297 -16 23 0 0 0 chr15 30048694 30048717 -71331804 + AT_rich Low_complexity Low_complexity 1 23 0 707 312 119 0 chr15 30048902 30049171 -71331350 + LTR33A LTR ERVL 223 523 0 21 0 0 0 chr15 30049599 30049620 -71330901 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr15 30049900 30049930 -71330591 + AT_rich Low_complexity Low_complexity 1 30 0 2280 126 0 0 chr15 30049979 30050289 -71330232 + AluSx SINE Alu 1 310 -2 787 292 18 4 chr15 30051362 30051636 -71328885 - HAL1 LINE L1 -293 2214 1937 1391 236 62 5 chr15 30051711 30052096 -71328425 - HAL1 LINE L1 -713 1794 1388 450 244 120 81 chr15 30052128 30052386 -71328135 - HAL1 LINE L1 -1882 625 358 472 219 67 55 chr15 30052395 30052559 -71327962 - LTR45B LTR ERV1 0 489 324 2217 112 0 0 chr15 30053043 30053339 -71327182 - AluSx SINE Alu -16 296 1 213 39 0 0 chr15 30053376 30053402 -71327119 + (A)n Simple_repeat Simple_repeat 1 26 0 3455 208 52 12 chr15 30053404 30054617 -71325904 + L1MC4a LINE L1 4398 5656 -510 1001 236 0 58 chr15 30054632 30054945 -71325576 + L1ME1 LINE L1 5870 6164 -2 243 286 135 23 chr15 30055671 30055804 -71324717 + Charlie7 DNA MER1_type 1 148 -2464 377 274 10 10 chr15 30055841 30055943 -71324578 - MER5A DNA MER1_type -6 183 82 204 301 6 14 chr15 30056628 30056700 -71323821 + MER5B DNA MER1_type 24 107 -82 464 219 114 35 chr15 30056996 30057197 -71323324 + L1MC4a LINE L1 5855 6071 -1737 652 231 63 89 chr15 30057338 30057607 -71322914 + MIR SINE MIR 1 262 0 1023 108 0 0 chr15 30057620 30057750 -71322771 - AluJo SINE Alu -178 134 5 259 167 39 20 chr15 30058582 30058633 -71321888 + Tigger4(Zombi) DNA MER2_type 1 52 -2679 191 266 62 62 chr15 30058652 30058716 -71321805 + L2 LINE L2 3227 3290 -23 22 0 0 0 chr15 30059628 30059650 -71320871 + AT_rich Low_complexity Low_complexity 1 22 0 330 360 32 8 chr15 30059947 30060072 -71320449 + L2 LINE L2 3143 3270 -2 3515 148 36 8 chr15 30060523 30061133 -71319388 + L1MB8 LINE L1 5552 6178 0 290 230 56 56 chr15 30062874 30063000 -71317521 + L2 LINE L2 3124 3249 -64 1624 187 0 0 chr15 30063142 30063415 -71317106 + AluJb SINE Alu 40 312 0 762 254 243 6 chr15 30064799 30065141 -71315380 + L2 LINE L2 2863 3285 -28 381 311 85 12 chr15 30065905 30066069 -71314452 - MIR SINE MIR -64 198 23 2249 66 42 7 chr15 30066138 30066424 -71314097 + AluY SINE Alu 1 296 -15 215 175 0 0 chr15 30067438 30067478 -71313043 + MIR SINE MIR 153 192 -70 467 316 101 5 chr15 30068251 30068460 -71312061 + L3 LINE CR1 1347 1575 -2 206 286 0 0 chr15 30068764 30068806 -71311715 + polypurine Low_complexity Low_complexity 6 47 0 555 264 80 10 chr15 30068916 30069117 -71311404 - MIR SINE MIR -18 244 30 204 345 0 0 chr15 30069093 30069151 -71311370 + L2 LINE L2 3215 3272 0 * 204 40 0 0 chr15 30070286 30070311 -71310210 + (CA)n Simple_repeat Simple_repeat 2 26 0 621 227 0 8 chr15 30070363 30070482 -71310039 + FLAM_C SINE Alu 1 118 -15 180 0 0 0 chr15 30070487 30070507 -71310014 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 469 271 115 71 chr15 30070658 30070926 -71309595 + L1ME4a LINE L1 5561 5816 -305 1891 154 17 0 chr15 30070926 30071219 -71309302 - AluSx SINE Alu -14 298 1 469 271 115 71 chr15 30071219 30071444 -71309077 + L1ME4a LINE L1 5816 6076 -45 204 261 0 0 chr15 30072092 30072138 -71308383 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2382 70 3 7 chr15 30072265 30072564 -71307957 - AluY SINE Alu -13 298 1 181 191 127 32 chr15 30073310 30073373 -71307148 + MIR3 SINE MIR 10 78 -130 239 306 57 64 chr15 30073936 30074093 -71306428 + MIR SINE MIR 88 243 -19 850 210 6 25 chr15 30074797 30074959 -71305562 + AluJb SINE Alu 136 294 -18 270 0 0 0 chr15 30075731 30075761 -71304760 + (A)n Simple_repeat Simple_repeat 1 30 0 297 0 0 0 chr15 30075761 30075794 -71304727 + (TA)n Simple_repeat Simple_repeat 2 34 0 * 414 0 0 0 chr15 30075793 30075839 -71304682 + (GA)n Simple_repeat Simple_repeat 2 47 0 309 300 0 0 chr15 30077278 30077358 -71303163 - MER5B DNA MER1_type -50 128 49 363 286 7 50 chr15 30077522 30077662 -71302859 - MER94 DNA DNA 0 134 1 2126 114 51 102 chr15 30077694 30078105 -71302416 + MLT1B LTR MaLR 1 390 0 201 347 13 53 chr15 30078485 30078635 -71301886 - L2 LINE L2 -181 3091 2948 283 343 17 41 chr15 30078715 30078887 -71301634 - L3b LINE CR1 -237 1346 1179 214 256 0 0 chr15 30078937 30078980 -71301541 + (CA)n Simple_repeat Simple_repeat 2 44 0 961 226 67 0 chr15 30079893 30080088 -71300433 - MER3 DNA MER1_type -1 208 1 186 103 0 0 chr15 30080916 30080945 -71299576 + (TG)n Simple_repeat Simple_repeat 2 30 0 261 0 0 0 chr15 30081497 30081526 -71298995 + (A)n Simple_repeat Simple_repeat 1 29 0 322 359 8 15 chr15 30086906 30087037 -71293484 + MER5B DNA MER1_type 12 141 -37 210 373 59 13 chr15 30087083 30087236 -71293285 - MIR3 SINE MIR -16 192 33 882 227 6 17 chr15 30090228 30090404 -71290117 + MER5B DNA MER1_type 2 175 -3 659 281 108 67 chr15 30091510 30092165 -71288356 - L2 LINE L2 0 3313 2631 15264 136 22 26 chr15 30092202 30092314 -71288207 - Tigger1 DNA MER2_type 0 2418 2307 1649 181 7 0 chr15 30092314 30092628 -71287893 + AluJo SINE Alu 1 316 0 15264 136 22 26 chr15 30092628 30092879 -71287642 - Tigger1 DNA MER2_type -111 2307 2057 2092 115 0 7 chr15 30092879 30093195 -71287326 + AluSx SINE Alu 1 314 0 15264 136 22 26 chr15 30093195 30094671 -71285850 - Tigger1 DNA MER2_type -361 2057 585 2282 77 0 17 chr15 30094671 30094970 -71285551 - AluSc SINE Alu -15 294 1 15264 136 22 26 chr15 30094970 30095553 -71284968 - Tigger1 DNA MER2_type -1833 585 1 306 259 118 15 chr15 30096185 30096320 -71284201 + MARNA DNA Mariner 134 282 -304 473 277 54 12 chr15 30096495 30096661 -71283860 + MARNA DNA Mariner 307 479 -107 2815 13 0 0 chr15 30096932 30097238 -71283283 - AluYb8 SINE Alu -12 306 1 811 278 18 21 chr15 30097811 30098272 -71282249 + LTR33 LTR ERVL 12 521 0 191 325 192 35 chr15 30098632 30098835 -71281686 + L2 LINE L2 2810 3044 -269 539 312 102 59 chr15 30098974 30099664 -71280857 + L2 LINE L2 2538 3267 -5 1131 160 29 29 chr15 30099857 30100063 -71280458 - L1PB4 LINE L1 -1 6155 5950 416 260 203 20 chr15 30100095 30100284 -71280237 + MIR SINE MIR 34 255 -7 298 330 10 7 chr15 30100445 30100570 -71279951 - MIR SINE MIR -63 145 25 869 268 48 36 chr15 30100690 30101104 -71279417 - HAL1 LINE L1 -231 2276 1858 1934 246 154 58 chr15 30101122 30102019 -71278502 - HAL1 LINE L1 -766 1741 759 762 176 52 7 chr15 30102050 30102203 -71278318 + MER20 DNA MER1_type 58 217 -2 1346 303 30 15 chr15 30102240 30102878 -71277643 - HAL1 LINE L1 -1790 717 1 380 157 29 0 chr15 30104464 30104534 -71275987 - MLT1A2 LTR MaLR -4 370 299 563 239 113 50 chr15 30106017 30106239 -71274282 + L1ME2 LINE L1 5920 6155 -9 1918 183 133 14 chr15 30106385 30106828 -71273693 + LTR54B LTR ERV1 1 496 -2 737 181 10 57 chr15 30106989 30107182 -71273339 + L1MB8 LINE L1 5992 6175 -3 1113 123 13 0 chr15 30107486 30107681 -71272840 - AluSg/x SINE Alu 0 322 126 2094 96 23 23 chr15 30107683 30107984 -71272537 - AluSx SINE Alu -11 301 1 335 281 144 0 chr15 30108089 30108228 -71272293 - MLT1I LTR MaLR -6 403 245 1685 158 3 50 chr15 30108269 30108586 -71271935 - AluJb SINE Alu 0 312 11 27 0 0 0 chr15 30108659 30108686 -71271835 + AT_rich Low_complexity Low_complexity 1 27 0 356 237 20 13 chr15 30109440 30109592 -71270929 + (TA)n Simple_repeat Simple_repeat 1 153 0 8823 164 27 15 chr15 30109699 30112240 -71268281 - L1PA16 LINE L1 -11 6155 3586 2952 161 51 0 chr15 30112260 30112768 -71267753 + LTR51 LTR ERV1 138 671 0 298 250 0 50 chr15 30113535 30113635 -71266886 + LTR67 LTR ERVL 456 550 -7 320 347 0 21 chr15 30114518 30114613 -71265908 - MIR SINE MIR -90 118 26 2779 125 49 2 chr15 30114790 30115199 -71265322 + MSTA LTR MaLR 1 428 0 234 246 46 15 chr15 30116532 30116597 -71263924 + MLT1K LTR MaLR 253 319 -269 1722 162 95 40 chr15 30116632 30116683 -71263838 - MLT1B LTR MaLR 0 390 343 3079 74 3 13 chr15 30116683 30117062 -71263459 - THE1C LTR MaLR 0 375 1 1722 162 95 40 chr15 30117062 30117380 -71263141 - MLT1B LTR MaLR -47 343 1 21 57 0 0 chr15 30117614 30117649 -71262872 + AT_rich Low_complexity Low_complexity 1 35 0 227 357 36 9 chr15 30118276 30118388 -71262133 + L2 LINE L2 3154 3268 -4 273 311 33 16 chr15 30118556 30118678 -71261843 + MIR SINE MIR 19 142 -66 22 56 0 0 chr15 30120278 30120314 -71260207 + AT_rich Low_complexity Low_complexity 1 36 0 450 0 0 0 chr15 30120851 30120901 -71259620 + (CA)n Simple_repeat Simple_repeat 1 50 0 21 57 0 0 chr15 30124975 30125010 -71255511 + GC_rich Low_complexity Low_complexity 1 35 0 315 259 9 2 chr15 30126124 30126269 -71254252 + MER5A DNA MER1_type 4 189 0 384 271 42 42 chr15 30126825 30126969 -71253552 + MIR SINE MIR 36 179 -83 226 302 266 0 chr15 30127096 30127235 -71253286 - L2 LINE L2 -1 3271 3096 1454 173 0 114 chr15 30127771 30128123 -71252398 - AluJo SINE Alu 0 312 1 522 188 10 0 chr15 30128350 30128451 -71252070 - L1MB2 LINE L1 0 6171 6070 287 306 35 12 chr15 30128559 30128644 -71251877 - MIR SINE MIR -164 98 12 257 344 10 10 chr15 30128678 30128774 -71251747 + MER5A DNA MER1_type 7 102 -87 2115 110 45 0 chr15 30129778 30130069 -71250452 - AluSx SINE Alu -6 306 3 829 141 7 30 chr15 30130677 30130812 -71249709 - AluJb SINE Alu -179 133 2 182 192 19 0 chr15 30131164 30131216 -71249305 + T-rich Low_complexity Low_complexity 2 54 0 1809 172 7 3 chr15 30131401 30131703 -71248818 + AluJb SINE Alu 1 303 -9 23 33 0 0 chr15 30132411 30132441 -71248080 + AT_rich Low_complexity Low_complexity 1 30 0 281 257 0 29 chr15 30134294 30134364 -71246157 - L2 LINE L2 0 3313 3246 219 333 0 0 chr15 30134690 30134741 -71245780 - L2 LINE L2 -5 3267 3217 202 221 263 11 chr15 30135203 30135298 -71245223 - L3b LINE CR1 -216 1367 1249 1133 308 49 39 chr15 30135744 30136361 -71244160 + L1MDa LINE L1 20 642 -5898 4896 48 17 2 chr15 30136626 30137644 -71242877 - MER11A LTR ERVK 0 1266 1 4881 203 72 53 chr15 30137692 30138304 -71242217 + L1MDa LINE L1 872 1471 -5069 1879 173 3 3 chr15 30138304 30138616 -71241905 + AluJb SINE Alu 1 312 0 4881 203 72 53 chr15 30138616 30139476 -71241045 + L1MDa LINE L1 1471 2372 -4168 1729 213 79 37 chr15 30139478 30139906 -71240615 + L1MD2 LINE L1 5902 6347 -12 637 199 128 26 chr15 30140770 30140926 -71239595 - MER5B DNA MER1_type -6 172 1 912 229 6 0 chr15 30140938 30141113 -71239408 - MER5A DNA MER1_type -4 185 10 308 328 38 8 chr15 30141236 30141367 -71239154 + MIR SINE MIR 43 177 -85 1914 125 0 0 chr15 30141391 30141647 -71238874 - AluSx SINE Alu -55 257 2 714 244 88 19 chr15 30141677 30141882 -71238639 - MIR SINE MIR -41 221 3 261 298 161 37 chr15 30142039 30142200 -71238321 + MER5A DNA MER1_type 1 181 -8 2923 141 50 23 chr15 30142431 30142908 -71237613 + LTR2B LTR ERV1 1 490 0 273 29 0 0 chr15 30143075 30143109 -71237412 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 312 48 0 0 chr15 30143434 30143476 -71237045 + (GA)n Simple_repeat Simple_repeat 1 42 0 533 280 74 45 chr15 30143957 30144308 -71236213 + L1ME LINE L1 921 1322 -5074 2032 135 7 0 chr15 30144308 30144597 -71235924 + AluSx SINE Alu 1 291 -21 533 280 74 45 chr15 30144597 30144763 -71235758 + L1ME LINE L1 1322 1482 -4914 1176 249 93 19 chr15 30144839 30145495 -71235026 + L1ME LINE L1 1935 2599 -3616 1668 269 98 55 chr15 30145574 30146694 -71233827 + L1ME LINE L1 2705 3872 -2343 1987 273 98 7 chr15 30146764 30147621 -71232900 + L1ME LINE L1 4602 5544 -687 216 0 0 0 chr15 30147761 30147785 -71232736 + (A)n Simple_repeat Simple_repeat 1 24 0 312 354 57 21 chr15 30149597 30149789 -71230732 - L2 LINE L2 -208 3064 2866 203 312 54 0 chr15 30150089 30150182 -71230339 + L2 LINE L2 1254 1351 -1963 1175 177 0 58 chr15 30150297 30150523 -71229998 - AluJb SINE Alu -14 298 86 529 191 118 0 chr15 30150639 30150749 -71229772 + MER63 DNA MER1_type 1 749 -87 348 296 178 20 chr15 30151179 30151331 -71229190 - MER5A DNA MER1_type 0 189 14 508 258 117 42 chr15 30151836 30152049 -71228472 + MIR SINE MIR 8 236 -26 1973 133 3 7 chr15 30152078 30152378 -71228143 + AluSx SINE Alu 1 299 -13 398 277 30 0 chr15 30152378 30152479 -71228042 + MIR SINE MIR 100 203 -59 304 334 114 82 chr15 30152699 30152999 -71227522 + L2 LINE L2 2831 3151 -121 646 207 75 17 chr15 30152999 30153173 -71227348 + MER5A DNA MER1_type 5 188 -1 304 334 114 82 chr15 30153173 30153300 -71227221 + L2 LINE L2 3151 3272 0 232 379 11 11 chr15 30153441 30153536 -71226985 - L2 LINE L2 -494 2820 2726 429 167 0 0 chr15 30155020 30155098 -71225423 + MER89 LTR ERV1 1 78 -481 * 1973 154 36 3 chr15 30155092 30155455 -71225066 + MER89 LTR ERV1 183 557 -2 275 57 0 0 chr15 30156380 30156415 -71224106 + U2 snRNA snRNA 1 35 -153 870 198 6 6 chr15 30156428 30156585 -71223936 + FRAM SINE Alu 1 157 -19 1412 61 0 0 chr15 30156901 30157082 -71223439 + L1PA8 LINE L1 5990 6170 -2 23 0 0 0 chr15 30157361 30157384 -71223137 + AT_rich Low_complexity Low_complexity 1 23 0 246 219 0 0 chr15 30157812 30157876 -71222645 + CT-rich Low_complexity Low_complexity 1 64 0 342 0 0 0 chr15 30157887 30157925 -71222596 + (CAT)n Simple_repeat Simple_repeat 1 38 0 269 273 45 40 chr15 30158766 30158942 -71221579 + L1MEd LINE L1 23 199 -5920 2440 206 54 75 chr15 30159050 30159284 -71221237 - L1ME2 LINE L1 -32 6132 5894 707 186 0 16 chr15 30159284 30159408 -71221113 + FLAM_A SINE Alu 1 122 -11 2440 206 54 75 chr15 30159408 30160074 -71220447 - L1ME2 LINE L1 -270 5894 5279 1726 151 21 7 chr15 30160074 30160359 -71220162 - AluJo SINE Alu -23 289 1 2440 206 54 75 chr15 30160359 30161011 -71219510 - L1ME2 LINE L1 -885 5279 4614 770 167 0 0 chr15 30161022 30161142 -71219379 + FLAM_C SINE Alu 5 124 -19 2447 229 40 24 chr15 30161176 30161981 -71218540 - L1ME2 LINE L1 -1540 4606 3789 2510 62 0 3 chr15 30162094 30162398 -71218123 + AluY SINE Alu 1 303 -8 1731 219 14 8 chr15 30162578 30162939 -71217582 - MLT1A1 LTR MaLR 0 365 3 7840 214 39 4 chr15 30163126 30165683 -71214838 + L1 LINE L1 2452 5120 -1026 21 0 0 0 chr15 30165789 30165810 -71214711 + AT_rich Low_complexity Low_complexity 1 21 0 2279 109 20 0 chr15 30165863 30166167 -71214354 + AluSx SINE Alu 1 310 -2 210 254 0 36 chr15 30166577 30166632 -71213889 - L3 LINE CR1 -5 1572 1520 512 309 72 45 chr15 30167608 30167831 -71212690 + MIR SINE MIR 23 251 -11 769 182 0 16 chr15 30167858 30168167 -71212354 + (CACCAT)n Simple_repeat Simple_repeat 1 304 0 497 309 99 0 chr15 30168664 30168845 -71211676 - MIR SINE MIR 0 262 64 227 267 186 23 chr15 30168971 30169143 -71211378 - L2 LINE L2 -213 3059 2860 798 145 145 27 chr15 30169670 30169856 -71210665 - MER3 DNA MER1_type 0 209 2 400 307 26 0 chr15 30170172 30170325 -71210196 + L2 LINE L2 2867 3023 -290 28 48 0 0 chr15 30171529 30171571 -71208950 + AT_rich Low_complexity Low_complexity 1 42 0 286 261 176 18 chr15 30171797 30171918 -71208603 + MIR SINE MIR 8 147 -107 261 259 37 15 chr15 30172582 30172717 -71207804 + L1MDb LINE L1 1145 1282 -5127 498 291 64 33 chr15 30172743 30172785 -71207736 + L1MDb LINE L1 1591 1630 -4957 2107 128 10 10 chr15 30172785 30173090 -71207431 + AluSx SINE Alu 1 305 -7 498 291 64 33 chr15 30173090 30173439 -71207082 + L1MDb LINE L1 1630 1994 -4593 2246 89 13 3 chr15 30173504 30173806 -71206715 + AluSq SINE Alu 1 305 -8 810 254 104 14 chr15 30173911 30174447 -71206074 + L1MDb LINE L1 2213 2774 -3632 1339 206 98 33 chr15 30174474 30174873 -71205648 + LTR40c LTR ERVL 36 460 -5 853 228 55 44 chr15 30174878 30175242 -71205279 + L1MDb LINE L1 2481 2848 -3558 375 257 125 86 chr15 30175257 30175495 -71205026 + L1MDb LINE L1 2821 3075 -3331 1613 174 15 8 chr15 30175495 30175760 -71204761 - AluJb SINE Alu -45 267 1 375 257 125 86 chr15 30175760 30175824 -71204697 + L1MDb LINE L1 3075 3135 -3271 2495 87 0 0 chr15 30175824 30176134 -71204387 - AluSx SINE Alu -2 310 1 229 111 111 0 chr15 30176157 30176202 -71204319 - L1MB5 LINE L1 -9 6165 6116 * 461 182 8 33 chr15 30176188 30176309 -71204212 - L1MB5 LINE L1 -9 6165 6048 435 188 50 0 chr15 30176324 30176425 -71204096 + L1MDb LINE L1 3148 3253 -3153 640 250 32 86 chr15 30176479 30176701 -71203820 + L1MDb LINE L1 3653 3885 -2521 207 0 0 0 chr15 30176701 30176724 -71203797 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2136 125 0 0 chr15 30176734 30177021 -71203500 + AluJb SINE Alu 21 307 -5 640 250 32 86 chr15 30177021 30177195 -71203326 + L1MDb LINE L1 3894 4038 -2368 22 35 0 0 chr15 30177213 30177242 -71203279 + AT_rich Low_complexity Low_complexity 1 29 0 1602 303 32 23 chr15 30177285 30178064 -71202457 + L1MC4a LINE L1 286 1071 -5516 917 216 13 74 chr15 30178062 30178117 -71202404 + L1MC4a LINE L1 4099 4156 -2250 * 1068 71 71 0 chr15 30178117 30178272 -71202249 + L1PA8 LINE L1 6007 6172 0 917 216 13 74 chr15 30178272 30178526 -71201995 + L1MC4a LINE L1 4156 4389 -2017 221 337 174 0 chr15 30180444 30180530 -71199991 + MIR SINE MIR 52 152 -56 195 100 0 0 chr15 30180832 30180862 -71199659 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 2122 91 14 3 chr15 30181731 30182027 -71198494 - AluSq SINE Alu -14 299 1 768 183 12 6 chr15 30182143 30182307 -71198214 + MER103 DNA DNA 1 165 -1 237 216 21 0 chr15 30183360 30183418 -71197103 - MIR SINE MIR -61 147 87 189 107 0 0 chr15 30183712 30183740 -71196781 + (A)n Simple_repeat Simple_repeat 1 28 0 188 219 244 12 chr15 30184010 30184092 -71196429 + MIR SINE MIR 45 145 -63 493 276 147 37 chr15 30185232 30185395 -71195126 - MER5A DNA MER1_type 0 189 9 293 336 67 34 chr15 30185668 30185817 -71194704 + MER5A DNA MER1_type 29 182 -7 2050 140 3 3 chr15 30187023 30187330 -71193191 + AluSx SINE Alu 1 307 -5 221 95 0 24 chr15 30187516 30187558 -71192963 + (ATTG)n Simple_repeat Simple_repeat 4 44 0 2264 93 0 0 chr15 30187558 30187838 -71192683 - AluSx SINE Alu -32 280 1 222 91 0 0 chr15 30187875 30187908 -71192613 + (A)n Simple_repeat Simple_repeat 1 33 0 3028 211 51 12 chr15 30187910 30189116 -71191405 + L1MC4a LINE L1 4667 5916 -510 883 233 0 58 chr15 30189131 30189444 -71191077 + L1ME1 LINE L1 5870 6164 -2 380 274 10 10 chr15 30190339 30190441 -71190080 - MER5A DNA MER1_type -6 183 82 202 301 6 14 chr15 30191126 30191198 -71189323 + MER5B DNA MER1_type 24 107 -82 391 234 109 30 chr15 30191494 30191695 -71188826 + L1MC4a LINE L1 6115 6331 -1737 670 231 63 89 chr15 30191836 30192105 -71188416 + MIR SINE MIR 1 262 0 1029 108 0 0 chr15 30192118 30192248 -71188273 - AluJo SINE Alu -178 134 5 240 175 0 0 chr15 30193080 30193120 -71187401 + Tigger4(Zombi) DNA MER2_type 1 40 -2691 195 266 62 62 chr15 30193150 30193214 -71187307 + L2 LINE L2 3227 3290 -23 22 0 0 0 chr15 30194128 30194150 -71186371 + AT_rich Low_complexity Low_complexity 1 22 0 342 360 32 8 chr15 30194447 30194572 -71185949 + L2 LINE L2 3143 3270 -2 3210 148 36 8 chr15 30195023 30195633 -71184888 + L1MB8 LINE L1 5552 6178 0 294 230 56 56 chr15 30197374 30197500 -71183021 + L2 LINE L2 3124 3249 -64 1651 187 0 0 chr15 30197642 30197915 -71182606 + AluJb SINE Alu 40 312 0 364 213 118 8 chr15 30198071 30198087 -71182434 - L1MA10 LINE L1 -2 6332 6317 2930 205 70 38 chr15 30198087 30198959 -71181562 - L1ME2 LINE L1 -9 6155 5256 353 154 88 33 chr15 30199058 30199149 -71181372 + MLT1L LTR MaLR 465 560 -55 26 0 0 0 chr15 30199886 30199912 -71180609 + AT_rich Low_complexity Low_complexity 1 26 0 1975 172 3 0 chr15 30200779 30201081 -71179440 + AluJb SINE Alu 1 303 -9 22 0 0 0 chr15 30201504 30201526 -71178995 + AT_rich Low_complexity Low_complexity 1 22 0 309 290 49 31 chr15 30201895 30202057 -71178464 - MARNA DNA Mariner -208 378 214 775 263 166 30 chr15 30202406 30202911 -71177610 - L1ME4a LINE L1 -65 6056 5483 22 35 0 0 chr15 30203917 30203946 -71176575 + AT_rich Low_complexity Low_complexity 1 29 0 522 299 181 45 chr15 30206007 30206509 -71174012 + L2 LINE L2 2480 3060 -212 320 277 47 98 chr15 30207514 30207662 -71172859 + MIR SINE MIR 2 131 -131 2134 129 0 3 chr15 30207662 30207965 -71172556 + AluSx SINE Alu 6 307 -5 320 277 47 98 chr15 30207965 30208090 -71172431 + MIR SINE MIR 131 261 -1 2247 102 10 0 chr15 30208303 30208596 -71171925 + AluSx SINE Alu 1 296 -16 451 219 67 55 chr15 30209080 30209244 -71171277 + LTR45B LTR ERV1 324 489 0 439 244 120 81 chr15 30209253 30209511 -71171010 + HAL1 LINE L1 358 625 -1882 1360 236 62 5 chr15 30209543 30209928 -71170593 + HAL1 LINE L1 1388 1794 -713 815 289 53 3 chr15 30209959 30210277 -71170244 + HAL1 LINE L1 1881 2214 -293 2263 126 0 0 chr15 30211350 30211660 -71168861 - AluSx SINE Alu -2 310 1 23 33 0 0 chr15 30211709 30211739 -71168782 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr15 30212018 30212039 -71168482 + AT_rich Low_complexity Low_complexity 1 21 0 488 307 80 0 chr15 30212573 30212736 -71167785 - LTR33A LTR ERVL -125 398 223 23 0 0 0 chr15 30212920 30212943 -71167578 + AT_rich Low_complexity Low_complexity 1 23 0 205 238 0 129 chr15 30213112 30213213 -71167308 - L2 LINE L2 -16 3297 3210 837 284 37 26 chr15 30213353 30213624 -71166897 - ERVL LTR ERVL -618 5146 4873 2406 93 3 0 chr15 30213679 30213990 -71166531 + AluSx SINE Alu 1 312 0 339 313 107 33 chr15 30214928 30215078 -71165443 + MER5A DNA MER1_type 1 161 -28 2315 81 0 7 chr15 30216400 30216697 -71163824 + AluY SINE Alu 5 299 -12 246 267 50 0 chr15 30216697 30216757 -71163764 + MER5C DNA MER1_type 5 67 -257 228 271 82 59 chr15 30217072 30217157 -71163364 - MIR SINE MIR -127 135 49 2181 106 0 0 chr15 30217570 30217878 -71162643 + AluSx SINE Alu 1 308 0 2067 102 20 10 chr15 30217971 30218266 -71162255 + AluSq SINE Alu 1 298 -15 923 92 0 0 chr15 30219231 30219351 -71161170 - AluSc SINE Alu -17 292 173 2044 149 8 37 chr15 30222152 30222528 -71157993 - MER47A DNA MER2_type 0 366 2 1293 202 40 53 chr15 30222637 30223072 -71157449 - LTR10B LTR ERV1 0 547 76 414 0 0 0 chr15 30223162 30223208 -71157313 + (CA)n Simple_repeat Simple_repeat 1 46 0 3223 228 52 36 chr15 30223403 30224437 -71156084 + L1MDa LINE L1 1320 2336 -4204 1968 131 26 10 chr15 30224437 30224742 -71155779 + AluSx SINE Alu 1 310 -2 306 0 0 0 chr15 30224742 30224776 -71155745 + (TA)n Simple_repeat Simple_repeat 2 35 0 3223 228 52 36 chr15 30224776 30225663 -71154858 + L1MDa LINE L1 2335 3277 -3263 701 196 21 93 chr15 30225663 30225801 -71154720 - MER58B DNA MER1_type -2079 341 219 632 117 45 0 chr15 30225801 30225912 -71154609 + L1MA6 LINE L1 6185 6300 0 701 196 21 93 chr15 30225912 30225967 -71154554 - MER58B DNA MER1_type -2201 219 162 2147 109 0 3 chr15 30226120 30226432 -71154089 + AluSq SINE Alu 1 311 0 2216 59 4 0 chr15 30228158 30228429 -71152092 + AluY SINE Alu 1 272 -39 2315 55 3 29 chr15 30228440 30228751 -71151770 + AluY SINE Alu 1 303 -8 28 38 0 19 chr15 30228917 30228945 -71151576 + AT_rich Low_complexity Low_complexity 1 29 -23 1656 171 29 7 chr15 30228945 30229225 -71151296 - AluJo SINE Alu -26 286 1 28 38 0 19 chr15 30229225 30229249 -71151272 + AT_rich Low_complexity Low_complexity 29 52 0 1638 201 3 3 chr15 30229448 30229747 -71150774 - AluJo SINE Alu -13 299 1 199 363 128 20 chr15 30232134 30232236 -71148285 + L2 LINE L2 3160 3272 0 1221 286 154 31 chr15 30232353 30233139 -71147382 - L2 LINE L2 -1 3312 2420 243 345 78 9 chr15 30234332 30234448 -71146073 + L2 LINE L2 3186 3309 -4 271 294 123 59 chr15 30235007 30235211 -71145310 - MER20 DNA MER1_type 0 219 3 1585 121 13 0 chr15 30235383 30235607 -71144914 + AluSg/x SINE Alu 75 301 -11 1589 155 34 11 chr15 30235651 30235916 -71144605 + AluSx SINE Alu 3 273 -39 2153 75 50 4 chr15 30237724 30238003 -71142518 + AluSg1 SINE Alu 1 292 -17 5279 154 59 20 chr15 30240230 30241817 -71138704 - L1MA9 LINE L1 -3 6309 4663 496 245 7 27 chr15 30241814 30241961 -71138560 - L1M4c LINE L1 -4605 1779 1636 * 733 233 48 24 chr15 30242576 30242786 -71137735 - L1MB8 LINE L1 -1 6177 5963 28 0 0 0 chr15 30243121 30243149 -71137372 + AT_rich Low_complexity Low_complexity 1 28 0 2103 86 57 4 chr15 30244764 30245044 -71135477 - AluSg SINE Alu -15 295 1 2336 83 3 3 chr15 30245218 30245518 -71135003 + AluSq SINE Alu 1 300 -13 795 202 72 69 chr15 30246117 30246463 -71134058 + L1MC5 LINE L1 7147 7493 -468 487 265 105 7 chr15 30246815 30247143 -71133378 - MARNA DNA Mariner -43 543 166 1846 159 3 3 chr15 30247255 30247557 -71132964 + AluJo SINE Alu 1 302 -10 434 258 74 74 chr15 30248196 30248425 -71132096 + MIR SINE MIR 26 254 -8 2437 100 0 0 chr15 30248605 30248915 -71131606 + AluSx SINE Alu 3 312 0 1913 136 4 4 chr15 30249262 30249541 -71130980 + AluSx SINE Alu 1 279 -33 221 73 0 24 chr15 30249543 30249584 -71130937 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2364 60 0 0 chr15 30250323 30250636 -71129885 + AluY SINE Alu 1 313 0 536 132 44 26 chr15 30250648 30250762 -71129759 + Charlie1 DNA MER1_type 1566 1681 -1080 855 178 8 97 chr15 30250767 30250804 -71129717 + Charlie1 DNA MER1_type 1783 1822 -939 2362 84 7 0 chr15 30250804 30251100 -71129421 + AluSg SINE Alu 3 300 -10 855 178 8 97 chr15 30251100 30251309 -71129212 + Charlie1 DNA MER1_type 1822 2007 -754 3185 201 57 36 chr15 30251313 30251456 -71129065 - L1ME1 LINE L1 -122 6044 5905 2020 140 3 3 chr15 30251456 30251756 -71128765 - AluJb SINE Alu -10 302 3 3185 201 57 36 chr15 30251756 30252196 -71128325 - L1ME1 LINE L1 -261 5905 5476 1221 182 190 8 chr15 30252196 30252454 -71128067 - AluSx SINE Alu -7 305 1 3185 201 57 36 chr15 30252454 30252637 -71127884 - L1ME1 LINE L1 -690 5476 5298 1750 164 46 3 chr15 30252637 30252961 -71127560 + MER44D DNA MER2_type 2 609 0 3185 201 57 36 chr15 30252961 30253686 -71126835 - L1ME1 LINE L1 -868 5298 4519 1651 162 99 48 chr15 30253740 30254082 -71126439 + Charlie1 DNA MER1_type 2229 2603 -158 2361 88 3 0 chr15 30254082 30254377 -71126144 - AluSx SINE Alu -16 296 1 1651 162 99 48 chr15 30254377 30254511 -71126010 + Charlie1 DNA MER1_type 2603 2729 -32 390 239 173 38 chr15 30254842 30255131 -71125390 + L1ME LINE L1 5319 5646 -475 2209 92 27 0 chr15 30255205 30255497 -71125024 + AluSx SINE Alu 1 300 -12 2197 48 44 0 chr15 30255533 30255842 -71124679 + AluY SINE Alu 1 321 0 555 237 158 26 chr15 30256025 30256253 -71124268 + MIR SINE MIR 5 262 0 25 99 0 0 chr15 30256800 30256881 -71123640 + AT_rich Low_complexity Low_complexity 1 81 0 6251 76 9 0 chr15 30257879 30259285 -71121236 - L1PA8A LINE L1 -13 6118 4704 2645 41 0 13 chr15 30260467 30260782 -71119739 - AluY SINE Alu 0 311 1 23 33 0 0 chr15 30260985 30261015 -71119506 + AT_rich Low_complexity Low_complexity 1 30 0 1897 129 6 28 chr15 30261173 30261490 -71119031 + AluSx SINE Alu 2 311 -1 1973 140 23 3 chr15 30262324 30262624 -71117897 + AluSx SINE Alu 1 306 -6 310 241 205 36 chr15 30262823 30262935 -71117586 - MIR3 SINE MIR -48 160 30 22 56 0 0 chr15 30263106 30263142 -71117379 + AT_rich Low_complexity Low_complexity 1 36 0 1854 139 0 46 chr15 30263476 30263831 -71116690 + AluJb SINE Alu 1 340 0 183 42 0 0 chr15 30263855 30263879 -71116642 + (TATTG)n Simple_repeat Simple_repeat 2 25 0 26 82 0 0 chr15 30263879 30263940 -71116581 + AT_rich Low_complexity Low_complexity 1 61 0 206 147 88 0 chr15 30263957 30264025 -71116496 + (TA)n Simple_repeat Simple_repeat 2 75 0 422 274 89 19 chr15 30265286 30265443 -71115078 - MIR3 SINE MIR -1 207 40 2320 104 0 0 chr15 30266080 30266378 -71114143 + AluSx SINE Alu 1 298 -14 2187 94 42 0 chr15 30266682 30266969 -71113552 - AluY SINE Alu -10 301 3 52 36 0 12 chr15 30267230 30267249 -71113272 + AT_rich Low_complexity Low_complexity 1 19 -64 2264 103 0 0 chr15 30267249 30267540 -71112981 + AluSx SINE Alu 1 291 -21 52 36 0 12 chr15 30267540 30267604 -71112917 + AT_rich Low_complexity Low_complexity 19 83 0 224 323 21 10 chr15 30267764 30267860 -71112661 + L2 LINE L2 3176 3272 0 2184 121 3 0 chr15 30267899 30268204 -71112317 + AluSx SINE Alu 1 306 -6 2177 123 0 0 chr15 30268706 30269014 -71111507 - AluSg SINE Alu -2 308 1 525 274 172 28 chr15 30269414 30269629 -71110892 - MIR SINE MIR -8 254 9 2230 94 7 7 chr15 30269895 30270193 -71110328 + AluSp SINE Alu 1 298 -15 2814 197 34 13 chr15 30271892 30272507 -71108014 - MER82 DNA MER2_type -3 650 23 359 0 43 0 chr15 30273092 30273138 -71107383 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 458 295 66 72 chr15 30274785 30275134 -71105387 + L2 LINE L2 2212 2558 -756 191 283 19 0 chr15 30275152 30275205 -71105316 + L2 LINE L2 2686 2739 -575 2231 115 0 3 chr15 30275636 30275940 -71104581 + AluSq SINE Alu 1 303 -10 6292 61 53 31 chr15 30276293 30277474 -71103047 + SVA Other Other 430 1440 0 1736 189 10 0 chr15 30277533 30277830 -71102691 - AluJo SINE Alu -12 300 1 1948 103 58 34 chr15 30278414 30278706 -71101815 + AluSx SINE Alu 1 299 -13 1940 104 7 15 chr15 30278885 30279155 -71101366 - AluSp SINE Alu -13 300 33 2478 97 0 0 chr15 30279275 30279584 -71100937 - AluSc SINE Alu 0 309 1 640 320 24 29 chr15 30279584 30280075 -71100446 - L1MEd LINE L1 -5042 1077 589 207 226 75 0 chr15 30280172 30280225 -71100296 - MIR SINE MIR -128 134 78 2386 77 10 0 chr15 30280588 30280885 -71099636 + AluSc SINE Alu 1 300 -9 310 276 164 0 chr15 30281080 30281196 -71099325 + MIR SINE MIR 110 244 -18 490 280 192 10 chr15 30281357 30281550 -71098971 + MIR SINE MIR 3 230 -32 194 356 26 26 chr15 30283035 30283103 -71097418 + MIR SINE MIR 29 99 -163 2045 146 0 7 chr15 30283103 30283412 -71097109 - AluSx SINE Alu -4 308 2 194 356 26 26 chr15 30283412 30283458 -71097063 + MIR SINE MIR 98 143 -119 2008 163 3 3 chr15 30283508 30283803 -71096718 - AluJb SINE Alu -17 295 1 1980 137 7 3 chr15 30284038 30284338 -71096183 + AluSx SINE Alu 1 301 -11 287 256 39 0 chr15 30284418 30284496 -71096025 - MIR SINE MIR -7 255 175 2277 94 3 3 chr15 30284823 30285122 -71095399 + AluSq SINE Alu 2 300 -13 322 123 0 55 chr15 30285123 30285196 -71095325 + L1ME3A LINE L1 5882 5950 -220 2245 97 0 7 chr15 30285565 30285865 -71094656 + AluSq SINE Alu 1 298 -15 180 0 0 0 chr15 30285893 30285913 -71094608 + (A)n Simple_repeat Simple_repeat 1 20 0 756 199 52 62 chr15 30285913 30286124 -71094397 + MIR SINE MIR 36 244 -18 1613 89 5 0 chr15 30286354 30286557 -71093964 - AluSg/x SINE Alu -13 297 94 2287 82 20 0 chr15 30286620 30286944 -71093577 + AluSp SINE Alu 1 330 0 190 0 0 0 chr15 30286923 30287024 -71093497 + (TAA)n Simple_repeat Simple_repeat 1 101 0 2428 54 7 0 chr15 30287123 30287418 -71093103 + AluY SINE Alu 1 297 -14 1577 185 7 11 chr15 30287428 30287709 -71092812 + AluJb SINE Alu 1 280 -32 227 325 175 0 chr15 30288040 30288166 -71092355 + L2 LINE L2 3016 3163 -150 213 151 0 0 chr15 30288168 30288221 -71092300 + (TA)n Simple_repeat Simple_repeat 2 54 0 401 356 7 22 chr15 30288221 30288356 -71092165 + L2 LINE L2 3117 3249 -23 1749 184 0 16 chr15 30288359 30288663 -71091858 - AluJb SINE Alu -13 299 1 562 343 93 8 chr15 30288663 30289054 -71091467 + L2 LINE L2 2250 2674 -640 855 146 15 0 chr15 30289055 30289185 -71091336 + AluSq/x SINE Alu 2 133 -179 2405 81 0 13 chr15 30290525 30290833 -71089688 + AluSc SINE Alu 1 304 -5 519 324 36 9 chr15 30290880 30291102 -71089419 + MIR SINE MIR 20 247 -15 1825 172 7 3 chr15 30291220 30291517 -71089004 - AluJb SINE Alu -14 298 1 2276 112 0 3 chr15 30291682 30291987 -71088534 + AluSx SINE Alu 1 304 -8 1425 215 11 18 chr15 30292190 30292474 -71088047 - AluJo SINE Alu -30 282 1 266 297 0 43 chr15 30292709 30292847 -71087674 + L1ME4a LINE L1 5648 5779 -342 2450 70 3 0 chr15 30292857 30293157 -71087364 - AluY SINE Alu -10 301 1 320 223 146 8 chr15 30293174 30293304 -71087217 + L1ME4a LINE L1 5970 6117 -4 22 0 0 0 chr15 30293331 30293353 -71087168 + AT_rich Low_complexity Low_complexity 1 22 0 259 333 26 0 chr15 30293798 30293876 -71086645 - MIR SINE MIR -75 133 54 211 220 40 0 chr15 30294205 30294255 -71086266 + L2 LINE L2 3221 3272 0 2242 114 0 0 chr15 30294584 30294883 -71085638 + AluSx SINE Alu 1 299 -13 289 313 84 113 chr15 30295546 30295891 -71084630 + L2 LINE L2 2938 3272 0 199 256 183 0 chr15 30295972 30296054 -71084467 - L2 LINE L2 -12 3301 3205 2386 71 6 56 chr15 30296065 30296389 -71084132 - AluSp SINE Alu -5 308 1 560 278 229 4 chr15 30296405 30296650 -71083871 + L2 LINE L2 2917 3216 -97 2369 85 3 0 chr15 30297003 30297308 -71083213 - AluSp SINE Alu -7 306 1 359 188 184 0 chr15 30297323 30297430 -71083091 + FLAM_A SINE Alu 21 127 -6 2506 33 0 20 chr15 30297451 30297753 -71082768 - AluY SINE Alu -15 296 1 287 357 161 11 chr15 30297753 30298033 -71082488 - L2 LINE L2 -559 2755 2434 414 283 53 78 chr15 30298340 30298623 -71081898 + L2 LINE L2 2996 3271 -1 185 0 40 0 chr15 30299235 30299260 -71081261 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2070 101 0 4 chr15 30299312 30299589 -71080932 - AluSp SINE Alu -17 296 21 1977 119 26 0 chr15 30299631 30299934 -71080587 + AluSx SINE Alu 1 311 -1 2793 207 54 58 chr15 30299934 30300462 -71080059 - L1ME1 LINE L1 -17 6149 5621 2110 111 0 4 chr15 30300462 30300766 -71079755 - AluSg SINE Alu 0 304 2 2793 207 54 58 chr15 30300766 30300886 -71079635 - L1ME1 LINE L1 -545 5621 5502 1437 97 29 0 chr15 30300886 30301093 -71079428 - L1PA12 LINE L1 0 6168 5956 2793 207 54 58 chr15 30301093 30301120 -71079401 - L1ME1 LINE L1 -664 5502 5476 2249 77 0 14 chr15 30301120 30301434 -71079087 - AluSx SINE Alu 0 310 1 2793 207 54 58 chr15 30301434 30301622 -71078899 - L1ME1 LINE L1 -690 5476 5285 2124 108 23 10 chr15 30301854 30302161 -71078360 + AluY SINE Alu 1 311 0 2317 80 0 3 chr15 30302173 30302500 -71078021 + AluSq SINE Alu 1 326 0 2314 107 0 0 chr15 30303353 30303652 -71076869 + AluSx SINE Alu 1 299 -13 259 342 25 0 chr15 30303927 30304047 -71076474 - L2 LINE L2 -1300 2014 1892 21 0 0 0 chr15 30355615 30355636 -71024885 + AT_rich Low_complexity Low_complexity 1 21 0 315 289 41 8 chr15 30355773 30355894 -71024627 + MIR SINE MIR 77 201 -61 197 280 0 0 chr15 30356592 30356642 -71023879 + L2 LINE L2 3264 3313 0 239 240 0 0 chr15 30357475 30357525 -71022996 - Alu SINE Alu -118 185 136 2546 61 0 0 chr15 30358337 30358648 -71021873 + AluY SINE Alu 1 311 0 192 179 0 0 chr15 30358970 30359009 -71021512 + (TTGGGG)n Simple_repeat Simple_repeat 3 41 0 203 244 0 0 chr15 30359108 30359153 -71021368 - L2 LINE L2 -1 3312 3268 212 313 25 0 chr15 30359236 30359316 -71021205 - L2 LINE L2 -234 3038 2957 1835 117 4 8 chr15 30360121 30360387 -71020134 + AluSp SINE Alu 47 311 -2 1158 249 41 68 chr15 30360417 30360855 -71019666 + MER34 LTR ERV1 1 426 -116 2285 103 0 3 chr15 30360882 30361182 -71019339 - AluSg SINE Alu -11 299 1 1779 100 123 4 chr15 30361692 30361952 -71018569 - AluSx SINE Alu -21 291 1 801 172 0 0 chr15 30361994 30362122 -71018399 - FLAM_C SINE Alu -5 128 1 2254 109 0 0 chr15 30362154 30362448 -71018073 + AluSg SINE Alu 1 294 -16 2025 128 19 47 chr15 30362521 30362840 -71017681 + AluSx SINE Alu 1 310 -2 2303 91 3 38 chr15 30362849 30363169 -71017352 + AluSc SINE Alu 1 309 0 2382 64 0 0 chr15 30363170 30363453 -71017068 + AluY SINE Alu 1 283 -28 189 25 25 50 chr15 30363459 30363499 -71017022 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 456 62 0 0 chr15 30363728 30363792 -71016729 + (TC)n Simple_repeat Simple_repeat 1 64 0 224 278 163 0 chr15 30363986 30364137 -71016384 + MIR3 SINE MIR 28 202 -6 736 314 81 50 chr15 30364317 30364674 -71015847 + MER115 DNA AcHobo 1 368 -325 605 252 0 14 chr15 30365481 30365620 -71014901 + MIR3 SINE MIR 71 207 -1 1684 201 40 23 chr15 30366102 30366456 -71014065 - MLT1A1 LTR MaLR -2 363 4 2293 105 0 0 chr15 30366844 30367139 -71013382 + AluSg SINE Alu 1 295 -15 2228 102 0 0 chr15 30367150 30367434 -71013087 + AluSg SINE Alu 1 284 -26 2014 103 0 0 chr15 30367544 30367797 -71012724 - AluSc SINE Alu -56 253 1 208 280 0 0 chr15 30367964 30368014 -71012507 + L2 LINE L2 3220 3269 -3 2455 88 3 0 chr15 30368389 30368696 -71011825 - AluSp SINE Alu -5 308 1 36 23 0 0 chr15 30368939 30368982 -71011539 + AT_rich Low_complexity Low_complexity 1 43 0 2254 91 6 63 chr15 30369005 30369336 -71011185 - AluSx SINE Alu 0 312 1 296 258 126 44 chr15 30369541 30369723 -71010798 + MIR SINE MIR 66 262 0 1141 128 16 5 chr15 30369894 30370082 -71010439 - L1MB3 LINE L1 -3 6180 5991 2241 71 0 7 chr15 30370441 30370753 -71009768 - AluSg1 SINE Alu 0 310 1 273 224 67 22 chr15 30370769 30370903 -71009618 + L1ME4a LINE L1 5767 5906 -215 21 0 0 0 chr15 30370954 30370975 -71009546 + AT_rich Low_complexity Low_complexity 1 21 0 564 197 53 58 chr15 30370999 30371187 -71009334 + L1ME4a LINE L1 5935 6121 0 1468 67 0 6 chr15 30372318 30372497 -71008024 + AluSg SINE Alu 48 225 -85 811 116 9 0 chr15 30372597 30372709 -71007812 + AluSg/x SINE Alu 191 303 -9 213 261 0 0 chr15 30372709 30372755 -71007766 + MIR SINE MIR 207 252 -10 508 259 0 0 chr15 30373127 30373235 -71007286 + L2 LINE L2 3165 3272 0 24 0 0 0 chr15 30373606 30373630 -71006891 + AT_rich Low_complexity Low_complexity 1 24 0 203 292 0 0 chr15 30373987 30374035 -71006486 + T-rich Low_complexity Low_complexity 3 50 0 478 297 29 34 chr15 30374180 30374259 -71006262 - MIR SINE MIR -88 174 96 2352 81 0 3 chr15 30374259 30374556 -71005965 + AluSc SINE Alu 1 296 -13 478 297 29 34 chr15 30374556 30374651 -71005870 - MIR SINE MIR -166 96 1 273 244 84 42 chr15 30374864 30374983 -71005538 + MIR SINE MIR 89 212 -50 264 280 53 0 chr15 30375652 30375727 -71004794 - L2 LINE L2 -44 3269 3191 192 195 24 0 chr15 30375792 30375833 -71004688 + L2 LINE L2 3231 3272 0 2594 74 0 0 chr15 30375958 30376267 -71004254 - AluSg SINE Alu -1 309 1 226 283 19 0 chr15 30376272 30376325 -71004196 - L2 LINE L2 -16 3256 3203 2284 102 0 7 chr15 30376940 30377243 -71003278 - AluSg SINE Alu 0 310 10 23 0 0 0 chr15 30377359 30377382 -71003139 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr15 30378728 30378757 -71001764 + AT_rich Low_complexity Low_complexity 1 29 0 1211 83 6 0 chr15 30378762 30378918 -71001603 - AluSg/x SINE Alu -19 293 137 906 151 40 0 chr15 30379076 30379228 -71001293 - MER4B LTR ERV1 -452 158 1 882 243 94 72 chr15 30379234 30379630 -71000891 - L2 LINE L2 -10 3303 2881 2010 93 70 36 chr15 30379630 30379932 -71000589 + AluSx SINE Alu 1 312 0 882 243 94 72 chr15 30379932 30380114 -71000407 - L2 LINE L2 -432 2881 2705 209 0 98 0 chr15 30380121 30380162 -71000359 + (TA)n Simple_repeat Simple_repeat 1 45 0 1654 182 3 17 chr15 30380162 30380459 -71000062 - AluJo SINE Alu -19 293 1 1187 285 131 36 chr15 30380516 30380554 -70999967 + MLT2F LTR ERVL 5 38 -625 2369 65 0 0 chr15 30380554 30380872 -70999649 - AluSc SINE Alu 0 318 1 1187 285 131 36 chr15 30380872 30381380 -70999141 + MLT2F LTR ERVL 38 604 -59 455 96 12 0 chr15 30381381 30381464 -70999057 + (TA)n Simple_repeat Simple_repeat 1 84 0 224 248 47 8 chr15 30381487 30381616 -70998905 + (TA)n Simple_repeat Simple_repeat 2 135 0 1543 88 5 0 chr15 30381616 30381810 -70998711 - AluSx SINE Alu -117 195 1 250 94 94 19 chr15 30381961 30382014 -70998507 - MLT2B1 LTR ERVL 0 520 464 201 158 0 0 chr15 30382035 30382073 -70998448 + (TA)n Simple_repeat Simple_repeat 2 39 0 388 121 12 24 chr15 30382084 30382124 -70998397 + (GGAA)n Simple_repeat Simple_repeat 2 41 -42 2177 86 23 20 chr15 30382124 30382427 -70998094 + AluSp SINE Alu 1 304 -9 388 121 12 24 chr15 30382427 30382469 -70998052 + (GGAA)n Simple_repeat Simple_repeat 41 83 0 1865 229 6 57 chr15 30382470 30382959 -70997562 - MLT2B1 LTR ERVL -56 464 1 971 173 7 0 chr15 30383010 30383160 -70997361 + MER45A DNA AcHobo 26 176 -2 301 244 181 25 chr15 30383161 30383321 -70997200 - L2 LINE L2 -814 2500 2316 620 333 16 8 chr15 30383640 30383889 -70996632 + MLT1J LTR MaLR 11 261 -250 549 222 71 0 chr15 30383951 30384077 -70996444 + MLT1J LTR MaLR 375 509 -2 1794 90 0 43 chr15 30384886 30385141 -70995380 + AluSg SINE Alu 64 307 -3 477 143 12 12 chr15 30385154 30385238 -70995283 + AluSg/x SINE Alu 139 222 -88 235 393 36 0 chr15 30385358 30385470 -70995051 - L2 LINE L2 -252 3020 2905 387 274 9 18 chr15 30385588 30385701 -70994820 - LTR33 LTR ERVL 0 521 410 1894 136 27 13 chr15 30385708 30386009 -70994512 + AluSx SINE Alu 4 308 -4 226 386 79 0 chr15 30386057 30386184 -70994337 - LTR33 LTR ERVL -126 395 259 576 246 8 0 chr15 30386243 30386377 -70994144 - LTR33 LTR ERVL -374 147 13 675 291 38 8 chr15 30386394 30386631 -70993890 + MER46C DNA MER2_type 95 338 0 189 290 62 25 chr15 30386720 30386882 -70993639 - L2 LINE L2 -464 2850 2683 526 241 87 104 chr15 30387364 30387605 -70992916 + MER57B LTR ERV1 1 260 -166 257 91 0 109 chr15 30387634 30387673 -70992848 + MER57A LTR ERV1 349 382 -21 2099 120 3 20 chr15 30387673 30387972 -70992549 - AluSx SINE Alu -16 296 3 257 91 0 109 chr15 30387972 30387987 -70992534 + MER57A LTR ERV1 382 397 -6 2296 113 0 0 chr15 30388602 30388902 -70991619 - AluSx SINE Alu -12 300 1 2276 95 30 0 chr15 30388906 30389210 -70991311 - AluSp SINE Alu 0 313 1 2348 99 0 3 chr15 30389213 30389517 -70991004 - AluSg SINE Alu -7 303 1 36 0 0 0 chr15 30389520 30389556 -70990965 + AT_rich Low_complexity Low_complexity 1 36 0 223 250 55 23 chr15 30389610 30389738 -70990783 + (TA)n Simple_repeat Simple_repeat 2 133 0 700 250 64 0 chr15 30389773 30389929 -70990592 - FRAM SINE Alu 0 166 1 2522 75 0 0 chr15 30390073 30390380 -70990141 - AluY SINE Alu -4 307 1 783 231 72 56 chr15 30390874 30391125 -70989396 + MIR SINE MIR 3 257 -5 1987 146 6 16 chr15 30391366 30391681 -70988840 + AluSq SINE Alu 1 312 -1 2125 117 30 0 chr15 30391861 30392159 -70988362 + AluSq SINE Alu 1 307 -6 2018 128 35 0 chr15 30392201 30392491 -70988030 + AluSx SINE Alu 1 300 -12 2344 54 0 4 chr15 30392747 30393055 -70987466 + AluY SINE Alu 6 312 0 942 88 0 19 chr15 30393685 30393844 -70986677 + (TCC)n Simple_repeat Simple_repeat 1 156 0 183 80 0 0 chr15 30393867 30393892 -70986629 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 238 274 71 36 chr15 30393896 30393980 -70986541 - MIR SINE MIR -162 100 14 266 304 20 49 chr15 30394010 30394112 -70986409 - MER5A DNA MER1_type -25 164 66 2244 106 0 10 chr15 30394381 30394683 -70985838 + AluSg SINE Alu 6 304 -6 2429 59 0 29 chr15 30394970 30395276 -70985245 + AluY SINE Alu 1 297 -14 436 312 53 70 chr15 30395378 30395679 -70984842 + L2 LINE L2 2915 3210 -62 232 36 0 0 chr15 30396538 30396566 -70983955 + MER53 DNA DNA 1 28 -161 1714 68 5 0 chr15 30396603 30396808 -70983713 + AluSq SINE Alu 1 206 -107 1127 202 135 45 chr15 30396820 30397265 -70983256 - L1MC5 LINE L1 -308 7653 7169 2174 109 0 16 chr15 30397269 30397573 -70982948 - AluY SINE Alu -12 299 1 180 0 0 0 chr15 30397622 30397642 -70982879 + (TG)n Simple_repeat Simple_repeat 2 21 0 845 108 17 0 chr15 30397642 30397762 -70982759 - AluSq/x SINE Alu -190 122 1 25 0 0 0 chr15 30397785 30397810 -70982711 + AT_rich Low_complexity Low_complexity 1 25 0 343 151 0 0 chr15 30397817 30397870 -70982651 - MER66A LTR ERV1 -138 340 288 342 190 0 0 chr15 30397886 30397944 -70982577 - L1MC5 LINE L1 -845 7116 7059 812 268 109 58 chr15 30397956 30398285 -70982236 - LTR16A LTR ERVL -13 437 92 2521 90 3 0 chr15 30398432 30398744 -70981777 + AluSp SINE Alu 1 313 0 1385 213 92 56 chr15 30399626 30399973 -70980548 + L1MC5 LINE L1 7331 7707 -254 2462 77 0 0 chr15 30399973 30400273 -70980248 - AluY SINE Alu -11 300 1 1385 213 92 56 chr15 30400273 30400492 -70980029 + L1MC5 LINE L1 7707 7917 -44 299 311 0 25 chr15 30400992 30401111 -70979410 + CT-rich Low_complexity Low_complexity 1 116 0 1913 118 97 0 chr15 30401405 30401684 -70978837 + AluSx SINE Alu 3 308 -4 1104 238 116 104 chr15 30401768 30402371 -70978150 + L2 LINE L2 2359 2960 -353 2509 54 0 7 chr15 30402371 30402669 -70977852 - AluY SINE Alu -15 296 1 1104 238 116 104 chr15 30402669 30402983 -70977538 + L2 LINE L2 2960 3269 -44 27 29 0 0 chr15 30403084 30403118 -70977403 + AT_rich Low_complexity Low_complexity 1 34 0 2299 104 0 0 chr15 30403449 30403757 -70976764 - AluY SINE Alu -3 308 1 186 260 125 29 chr15 30403885 30403989 -70976532 + L3b LINE CR1 1272 1385 -198 588 232 68 6 chr15 30404634 30404811 -70975710 - MIR SINE MIR 0 262 75 200 86 29 0 chr15 30405261 30405296 -70975225 + (CAA)n Simple_repeat Simple_repeat 1 36 0 2069 117 0 26 chr15 30405437 30405744 -70974777 - AluSg SINE Alu -11 299 1 2627 62 0 0 chr15 30405755 30406064 -70974457 - AluSc SINE Alu 0 309 1 1351 232 113 41 chr15 30406231 30406743 -70973778 - MLT1H LTR MaLR 0 549 1 1882 94 0 0 chr15 30407226 30407470 -70973051 + AluY SINE Alu 63 306 -5 583 242 66 28 chr15 30408454 30408636 -70971885 + MIR SINE MIR 74 262 0 2307 112 3 0 chr15 30408653 30408957 -70971564 + AluSp SINE Alu 1 305 -8 37 39 0 0 chr15 30409084 30409135 -70971386 + AT_rich Low_complexity Low_complexity 1 51 0 2572 80 0 0 chr15 30409384 30409695 -70970826 + AluY SINE Alu 1 311 0 22 70 0 0 chr15 30410012 30410055 -70970466 + AT_rich Low_complexity Low_complexity 1 43 0 2833 16 0 0 chr15 30411071 30411377 -70969144 + AluYa5 SINE Alu 1 306 -5 355 291 57 65 chr15 30412606 30412792 -70967729 + MIR SINE MIR 7 192 -70 1940 155 0 3 chr15 30412792 30413095 -70967426 + AluSx SINE Alu 1 302 -10 355 291 57 65 chr15 30413095 30413155 -70967366 + MIR SINE MIR 192 251 -11 2440 56 3 16 chr15 30413241 30413545 -70966976 - AluY SINE Alu -11 300 1 2356 98 7 0 chr15 30414233 30414540 -70965981 - AluSq SINE Alu -3 310 2 1050 98 0 0 chr15 30414542 30414674 -70965847 - AluSq/x SINE Alu -181 132 1 1772 98 0 13 chr15 30415121 30415355 -70965166 - AluSx SINE Alu -81 231 1 304 267 0 12 chr15 30415520 30415606 -70964915 + MIR SINE MIR 164 248 -14 2586 83 0 0 chr15 30415780 30416092 -70964429 + AluSq SINE Alu 1 312 -1 203 290 85 57 chr15 30417523 30417611 -70962910 - MIR SINE MIR -30 232 148 2424 64 0 55 chr15 30417611 30417940 -70962581 - AluY SINE Alu 0 311 1 203 290 85 57 chr15 30417940 30418027 -70962494 - MIR SINE MIR -114 148 52 1977 147 0 13 chr15 30418287 30418600 -70961921 + AluJb SINE Alu 1 309 -3 2347 102 3 0 chr15 30419035 30419339 -70961182 - AluSg SINE Alu -5 305 1 4124 126 22 55 chr15 30419375 30420088 -70960433 + LTR8 LTR ERV1 1 690 -1 416 258 17 33 chr15 30420391 30420511 -70960010 - MER5B DNA MER1_type -1 177 60 198 103 0 0 chr15 30420649 30420678 -70959843 + (T)n Simple_repeat Simple_repeat 1 29 0 186 43 0 0 chr15 30420940 30420963 -70959558 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1906 99 57 4 chr15 30421249 30421512 -70959009 - AluSp SINE Alu -32 281 5 2157 101 13 16 chr15 30421527 30421834 -70958687 - AluSq SINE Alu -7 306 1 254 25 0 50 chr15 30422063 30422103 -70958418 - AluY SINE Alu -263 38 1 3084 198 88 4 chr15 30422106 30422798 -70957723 - L1MD2 LINE L1 -9 6350 5601 5163 130 19 60 chr15 30422898 30423122 -70957399 - L1PA16 LINE L1 -11 6155 5923 2138 128 3 3 chr15 30423122 30423428 -70957093 - AluSq SINE Alu -7 306 1 5163 130 19 60 chr15 30423428 30423952 -70956569 - L1PA16 LINE L1 -243 5923 5459 2094 129 0 3 chr15 30423952 30424246 -70956275 - AluSg SINE Alu -17 293 1 5163 130 19 60 chr15 30424246 30424526 -70955995 - L1PA16 LINE L1 -707 5459 5169 287 195 93 27 chr15 30424893 30424976 -70955545 + MIR SINE MIR 37 125 -83 1385 325 118 36 chr15 30425047 30425106 -70955415 + L2 LINE L2 1698 1751 -1563 2111 106 7 33 chr15 30425106 30425408 -70955113 - AluSx SINE Alu -18 294 1 1385 325 118 36 chr15 30425408 30426530 -70953991 + L2 LINE L2 1751 2976 -338 279 275 100 33 chr15 30426678 30426798 -70953723 + L2 LINE L2 3180 3307 -6 2289 110 3 0 chr15 30427541 30427841 -70952680 - AluSp SINE Alu -10 303 3 445 290 90 63 chr15 30428064 30428429 -70952092 - L2 LINE L2 -2 3311 2937 2365 80 13 0 chr15 30429011 30429310 -70951211 - AluSc SINE Alu -6 303 1 259 210 160 20 chr15 30429939 30430039 -70950482 - L2 LINE L2 0 3313 3200 274 287 53 11 chr15 30430110 30430204 -70950317 - MIR3 SINE MIR -21 187 90 948 144 26 0 chr15 30431104 30431257 -70949264 - L1PA15-16 LINE L1 -6437 412 256 3775 130 60 23 chr15 30431596 30433316 -70947205 + SVA Other Other 395 1151 -235 216 0 0 0 chr15 30433316 30433340 -70947181 + (T)n Simple_repeat Simple_repeat 1 24 0 2519 46 0 3 chr15 30433778 30434080 -70946441 + AluY SINE Alu 1 301 -10 2098 51 0 16 chr15 30435422 30435677 -70944844 + SVA Other Other 1135 1385 -1 2228 106 0 3 chr15 30436508 30436801 -70943720 - AluSq SINE Alu -21 292 1 924 102 8 0 chr15 30437022 30437149 -70943372 + FLAM_C SINE Alu 2 129 -4 445 247 247 16 chr15 30438288 30438482 -70942039 + MIR SINE MIR 3 241 -21 1223 232 140 41 chr15 30438583 30438997 -70941524 + MLT1K LTR MaLR 108 562 -26 454 320 23 0 chr15 30439507 30439635 -70940886 + L2 LINE L2 3139 3269 -3 1993 149 0 10 chr15 30440638 30440946 -70939575 - AluJb SINE Alu -7 305 1 439 328 68 25 chr15 30441181 30441504 -70939017 + L1MC/D LINE L1 5274 5610 -2198 2009 120 3 7 chr15 30441508 30441831 -70938690 + AluSx SINE Alu 1 322 0 228 170 0 0 chr15 30441881 30441934 -70938587 + L1MC4 LINE L1 6649 6701 -1341 247 256 100 33 chr15 30441948 30442038 -70938483 + L1MC/D LINE L1 5667 5762 -2046 203 314 14 29 chr15 30442230 30442300 -70938221 - MIR SINE MIR -113 95 27 227 120 0 60 chr15 30443222 30443272 -70937249 + (CGG)n Simple_repeat Simple_repeat 2 48 0 273 29 0 0 chr15 30443406 30443440 -70937081 + (CAA)n Simple_repeat Simple_repeat 2 35 0 2454 79 0 0 chr15 30443507 30443811 -70936710 + AluY SINE Alu 1 304 -7 1021 165 6 0 chr15 30443875 30444045 -70936476 + L1PB4 LINE L1 5986 6156 0 26 30 0 0 chr15 30444547 30444580 -70935941 + AT_rich Low_complexity Low_complexity 1 33 0 2380 98 0 0 chr15 30445496 30445793 -70934728 + AluSg1 SINE Alu 1 297 -12 244 143 0 71 chr15 30445979 30446035 -70934486 - L1MC4 LINE L1 -1339 6703 6652 661 118 0 0 chr15 30446966 30447059 -70933462 + AluS SINE Alu 2 94 -219 2408 134 2 42 chr15 30447580 30447984 -70932537 + MLT1B LTR MaLR 3 390 0 267 293 77 28 chr15 30448414 30448595 -70931926 - L2 LINE L2 -353 2961 2772 25 83 0 0 chr15 30449489 30449549 -70930972 + AT_rich Low_complexity Low_complexity 1 60 0 368 235 67 42 chr15 30449576 30449695 -70930826 + MIR SINE MIR 2 123 -139 29 0 0 0 chr15 30450928 30450957 -70929564 + AT_rich Low_complexity Low_complexity 1 29 0 2428 96 0 0 chr15 30452062 30452365 -70928156 + AluSq SINE Alu 1 303 -10 24 53 0 0 chr15 30452662 30452700 -70927821 + AT_rich Low_complexity Low_complexity 1 38 0 194 157 0 39 chr15 30453701 30453752 -70926769 + CT-rich Low_complexity Low_complexity 4 52 0 302 318 37 0 chr15 30453755 30453862 -70926659 - L2 LINE L2 0 3313 3203 2224 116 0 7 chr15 30454059 30454361 -70926160 - AluSx SINE Alu -11 301 2 23 0 0 0 chr15 30455630 30455653 -70924868 + AT_rich Low_complexity Low_complexity 1 23 0 186 139 47 23 chr15 30456082 30456125 -70924396 - MIR SINE MIR -3 259 216 * 245 325 204 30 chr15 30456089 30456320 -70924201 - L2 LINE L2 -16 3256 2986 1145 271 96 43 chr15 30456400 30456891 -70923630 - LTR33A LTR ERVL -5 518 2 1523 261 134 12 chr15 30457118 30457609 -70922912 + MLT1H1 LTR MaLR 2 552 -3 913 232 23 18 chr15 30457726 30457946 -70922575 - MER58A DNA MER1_type -3 221 1 2425 65 3 0 chr15 30461124 30461417 -70919104 + AluSp SINE Alu 1 294 -19 1975 85 8 4 chr15 30461564 30461822 -70918699 + AluSc SINE Alu 40 298 -11 1926 153 0 7 chr15 30461826 30462127 -70918394 + AluSx SINE Alu 1 299 -13 323 294 200 12 chr15 30463019 30463179 -70917342 + MIR SINE MIR 2 191 -71 479 126 126 0 chr15 30466450 30466537 -70913984 - AluSx SINE Alu -19 290 193 1130 103 0 0 chr15 30466538 30466684 -70913837 - AluSx SINE Alu -167 146 1 347 287 76 25 chr15 30467281 30467438 -70913083 - MIR SINE MIR 0 262 98 31 0 0 0 chr15 30470577 30470608 -70909913 + AT_rich Low_complexity Low_complexity 1 31 0 1967 110 3 47 chr15 30470609 30470909 -70909612 - AluSx SINE Alu -25 287 1 579 171 18 9 chr15 30471033 30471144 -70909377 + L1MB3 LINE L1 5577 5688 -495 459 196 165 0 chr15 30471162 30471259 -70909262 - L2 LINE L2 -10 3303 3191 25 51 0 0 chr15 30472261 30472300 -70908221 + GC_rich Low_complexity Low_complexity 1 39 0 2622 158 33 4 chr15 30472408 30472858 -70907663 + L1MB3 LINE L1 5675 6137 -46 2411 62 7 13 chr15 30472863 30473167 -70907354 + AluSq SINE Alu 1 302 -11 2218 105 0 0 chr15 30473177 30473471 -70907050 + AluY SINE Alu 1 294 -17 229 222 0 0 chr15 30474205 30474250 -70906271 + MIR SINE MIR 192 236 -26 196 311 22 33 chr15 30475061 30475151 -70905370 + L2 LINE L2 3180 3268 -4 23 33 0 0 chr15 30475545 30475575 -70904946 + AT_rich Low_complexity Low_complexity 1 30 0 27 87 0 0 chr15 30476388 30476457 -70904064 + AT_rich Low_complexity Low_complexity 1 69 0 2296 90 0 0 chr15 30476469 30476759 -70903762 - AluSx SINE Alu -22 290 1 23 0 0 0 chr15 30476765 30476788 -70903733 + AT_rich Low_complexity Low_complexity 1 23 0 2361 88 0 7 chr15 30476917 30477223 -70903298 - AluSg SINE Alu -6 304 1 1042 90 0 0 chr15 30477226 30477359 -70903162 - AluSq/x SINE Alu -180 133 1 2750 62 18 25 chr15 30477366 30477896 -70902625 - LTR17 LTR ERV1 -196 584 1 2238 92 7 0 chr15 30478084 30478376 -70902145 + AluSc SINE Alu 1 294 -15 1910 104 18 11 chr15 30479430 30479743 -70900778 - AluSx SINE Alu 0 315 1 25 0 0 0 chr15 30480297 30480322 -70900199 + AT_rich Low_complexity Low_complexity 1 25 0 2454 93 3 0 chr15 30480326 30480638 -70899883 - AluSp SINE Alu 0 313 1 1597 165 4 18 chr15 30480911 30481190 -70899331 + AluJb SINE Alu 1 275 -37 348 316 51 0 chr15 30481723 30481840 -70898681 + L2 LINE L2 3189 3311 -2 206 364 24 57 chr15 30482724 30483021 -70897500 - L2 LINE L2 -406 2908 2622 22 0 0 0 chr15 30485040 30485062 -70895459 + AT_rich Low_complexity Low_complexity 1 22 0 403 294 74 2 chr15 30486397 30486552 -70893969 - MER5A DNA MER1_type 0 189 12 392 274 68 0 chr15 30486648 30486765 -70893756 - L2 LINE L2 0 3313 3189 252 276 81 23 chr15 30487023 30487110 -70893411 - L2 LINE L2 0 3313 3222 4083 146 44 22 chr15 30487260 30487920 -70892601 + L1MA4 LINE L1 5491 6173 -127 297 51 0 0 chr15 30487920 30487959 -70892562 + (CA)n Simple_repeat Simple_repeat 2 40 0 4083 146 44 22 chr15 30487959 30488086 -70892435 + L1MA4 LINE L1 6173 6296 -4 324 128 59 59 chr15 30488098 30488200 -70892321 - Zaphod DNA AcHobo -3112 919 818 1311 322 86 17 chr15 30488236 30488816 -70891705 - L2 LINE L2 -338 2976 2357 237 196 0 54 chr15 30489718 30489774 -70890747 + CT-rich Low_complexity Low_complexity 3 55 0 506 299 41 7 chr15 30490116 30490263 -70890258 - MIR SINE MIR -22 240 89 1890 113 98 0 chr15 30490880 30491155 -70889366 + AluSx SINE Alu 1 302 -10 2518 93 0 0 chr15 30491461 30491773 -70888748 + AluSx SINE Alu 1 312 0 198 0 0 0 chr15 30492790 30492812 -70887709 + (T)n Simple_repeat Simple_repeat 1 22 0 26 30 0 0 chr15 30492886 30492919 -70887602 + AT_rich Low_complexity Low_complexity 1 33 0 237 264 46 90 chr15 30493428 30493698 -70886823 + L3 LINE CR1 1227 1543 -34 300 245 85 0 chr15 30493993 30494087 -70886434 - L1MC5 LINE L1 -30 7931 7830 1922 198 62 37 chr15 30494112 30494596 -70885925 + MLT1D LTR MaLR 7 502 -3 31 44 0 0 chr15 30494832 30494877 -70885644 + AT_rich Low_complexity Low_complexity 1 45 0 1224 190 118 14 chr15 30495304 30495583 -70884938 + AluJo SINE Alu 1 308 -4 1939 132 26 166 chr15 30496140 30496677 -70883844 + MLT2C2 LTR ERVL 1 462 -2 1715 177 7 0 chr15 30498602 30498890 -70881631 + AluJo SINE Alu 1 290 -22 2482 58 0 0 chr15 30499526 30499818 -70880703 - AluY SINE Alu -19 292 1 441 200 87 9 chr15 30500581 30500696 -70879825 - L1ME4a LINE L1 -54 6067 5944 227 204 0 0 chr15 30501238 30501282 -70879239 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 387 0 0 0 chr15 30501503 30501546 -70878975 + (TG)n Simple_repeat Simple_repeat 2 44 0 965 260 22 4 chr15 30502525 30502756 -70877765 - MIR SINE MIR -22 240 6 199 411 36 9 chr15 30503938 30504050 -70876471 + L2 LINE L2 2422 2536 -778 209 289 22 0 chr15 30504115 30504160 -70876361 - MIR SINE MIR -142 66 21 278 320 11 45 chr15 30504401 30504579 -70875942 + L2 LINE L2 1538 1709 -1605 2277 92 0 3 chr15 30504667 30504970 -70875551 - AluSg SINE Alu -8 302 1 181 346 59 0 chr15 30505076 30505177 -70875344 + L2 LINE L2 1881 1987 -1327 * 257 246 0 0 chr15 30505173 30505230 -70875291 - L2 LINE L2 0 3272 3216 552 233 122 11 chr15 30506685 30506850 -70873671 - MER5A DNA MER1_type 0 189 4 4779 149 51 6 chr15 30506871 30507698 -70872823 + MER6 DNA MER2_type 2 865 0 291 225 12 38 chr15 30507744 30507824 -70872697 - MER103 DNA DNA -17 149 72 2190 122 3 0 chr15 30507921 30508232 -70872289 - AluSq SINE Alu -1 312 1 1139 184 147 7 chr15 30508415 30508714 -70871807 + MER58B DNA MER1_type 1 341 0 204 97 0 0 chr15 30509135 30509166 -70871355 + (GA)n Simple_repeat Simple_repeat 2 32 0 1262 138 51 12 chr15 30509508 30509762 -70870759 + L1MA6 LINE L1 6037 6300 0 443 253 127 0 chr15 30509787 30509945 -70870576 + MIR SINE MIR 85 262 0 231 208 38 0 chr15 30509974 30510027 -70870494 + L2 LINE L2 3258 3312 -1 436 357 39 18 chr15 30510739 30510967 -70869554 - MIR SINE MIR -30 232 3 1360 264 123 50 chr15 30514249 30514848 -70865673 + L2 LINE L2 1063 1705 -1609 4753 124 40 6 chr15 30514857 30515638 -70864883 + L1PA16 LINE L1 5357 6163 -3 1903 295 93 80 chr15 30515642 30515870 -70864651 + L2 LINE L2 1713 1937 -1376 1720 131 10 39 chr15 30515870 30516176 -70864345 - L1PA15 LINE L1 0 6165 5869 1903 295 93 80 chr15 30516176 30516277 -70864244 + L2 LINE L2 1937 2035 -1278 2572 35 0 0 chr15 30516277 30516588 -70863933 + L1PA4 LINE L1 5845 6155 0 1903 295 93 80 chr15 30516588 30516937 -70863584 + L2 LINE L2 2035 2378 -935 1607 168 40 114 chr15 30516937 30517341 -70863180 + MLT1A2 LTR MaLR 1 374 0 1903 295 93 80 chr15 30517341 30518237 -70862284 + L2 LINE L2 2378 3311 -2 22 0 0 0 chr15 30519825 30519847 -70860674 + AT_rich Low_complexity Low_complexity 1 22 0 21 89 0 0 chr15 30519965 30520021 -70860500 + AT_rich Low_complexity Low_complexity 1 56 0 999 251 37 33 chr15 30521483 30521972 -70858549 + MER39 LTR ERV1 18 542 0 231 292 18 62 chr15 30522718 30522831 -70857690 - MIR SINE MIR -50 212 105 24 0 0 0 chr15 30522999 30523023 -70857498 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr15 30523619 30523647 -70856874 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr15 30524089 30524119 -70856402 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr15 30527043 30527080 -70853441 + AT_rich Low_complexity Low_complexity 1 37 0 2002 130 10 79 chr15 30527092 30527294 -70853227 - Tigger4(Zombi) DNA MER2_type -1 2730 2566 2302 114 0 0 chr15 30527294 30527600 -70852921 - AluSg SINE Alu -4 306 1 2002 130 10 79 chr15 30527600 30527788 -70852733 - Tigger4(Zombi) DNA MER2_type -165 2566 2367 459 165 101 0 chr15 30527812 30527891 -70852630 - Tigger4(Zombi) DNA MER2_type -2644 87 1 1061 149 0 0 chr15 30528133 30528287 -70852234 - FAM SINE Alu -18 157 4 486 172 35 0 chr15 30528323 30528410 -70852111 - AluJb SINE Alu -111 201 112 25 31 0 0 chr15 30528410 30528442 -70852079 + AT_rich Low_complexity Low_complexity 1 32 0 637 312 88 71 chr15 30528594 30529142 -70851379 + L2 LINE L2 2325 2881 -433 427 297 25 0 chr15 30529351 30529469 -70851052 - L2 LINE L2 0 3313 3193 2445 68 3 0 chr15 30531909 30532205 -70848316 - AluSp SINE Alu -16 297 1 1646 169 19 36 chr15 30532727 30533035 -70847486 + AluJo SINE Alu 1 303 -9 306 0 0 0 chr15 30533035 30533069 -70847452 + (CAT)n Simple_repeat Simple_repeat 2 35 0 2279 95 0 7 chr15 30533092 30533387 -70847134 + AluSp SINE Alu 1 293 -20 678 184 0 26 chr15 30533393 30533545 -70846976 - L1MA6 LINE L1 -9 6291 6144 2563 88 5 37 chr15 30533666 30534040 -70846481 - THE1B LTR MaLR 0 364 3 286 388 39 0 chr15 30534248 30534351 -70846170 + L2 LINE L2 3149 3255 -17 2289 115 3 0 chr15 30534359 30534671 -70845850 + AluSp SINE Alu 1 313 0 329 250 116 47 chr15 30534686 30534962 -70845559 + L1ME4a LINE L1 5562 5856 -265 468 0 0 0 chr15 30535827 30535879 -70844642 + (CA)n Simple_repeat Simple_repeat 2 53 0 1385 143 29 97 chr15 30535940 30536219 -70844302 - AluJb SINE Alu -49 263 4 474 310 69 0 chr15 30536461 30536606 -70843915 + MIR SINE MIR 15 169 -93 21 57 0 0 chr15 30536914 30536949 -70843572 + AT_rich Low_complexity Low_complexity 1 35 0 324 0 0 0 chr15 30537655 30537691 -70842830 + (T)n Simple_repeat Simple_repeat 1 36 0 274 246 156 96 chr15 30541104 30541159 -70839362 - MIR3 SINE MIR -1 207 157 2369 48 19 32 chr15 30541159 30541468 -70839053 - AluY SINE Alu -6 305 1 274 246 156 96 chr15 30541468 30541579 -70838942 - MIR3 SINE MIR -51 157 31 227 264 19 0 chr15 30541826 30541879 -70838642 - MIR3 SINE MIR -24 184 131 698 136 33 2 chr15 30542208 30542340 -70838181 + L1M3 LINE L1 5474 5613 -555 238 220 17 17 chr15 30542410 30542469 -70838052 - L2 LINE L2 -1 3271 3213 218 276 173 11 chr15 30542473 30542621 -70837900 + MIR SINE MIR 5 256 -6 1153 176 107 76 chr15 30543138 30543428 -70837093 + AluJo SINE Alu 1 299 -3 4433 125 26 30 chr15 30543445 30544182 -70836339 + MER50 LTR ERV1 1 734 0 812 164 62 0 chr15 30544182 30544322 -70836199 + FRAM SINE Alu 11 159 -17 859 233 173 63 chr15 30545079 30545636 -70834885 - LTR29 LTR ERV1 0 747 141 3126 154 38 62 chr15 30545636 30546344 -70834177 - LTR8 LTR ERV1 0 691 1 859 233 173 63 chr15 30546344 30546503 -70834018 - LTR29 LTR ERV1 -606 141 1 362 285 95 29 chr15 30546880 30547017 -70833504 - MIR SINE MIR -107 155 10 2187 173 51 27 chr15 30547051 30547501 -70833020 + LOR1b LTR ERV1 1 461 0 299 288 72 33 chr15 30547666 30547819 -70832702 + MIR SINE MIR 101 259 -3 319 270 29 66 chr15 30548193 30548330 -70832191 - L2 LINE L2 0 3313 3182 28 91 0 0 chr15 30548763 30548840 -70831681 + AT_rich Low_complexity Low_complexity 1 77 0 372 22 0 0 chr15 30549762 30549807 -70830714 + (GA)n Simple_repeat Simple_repeat 2 46 0 303 220 0 181 chr15 30550092 30550191 -70830330 - MIR SINE MIR -21 241 186 2946 162 41 2 chr15 30550191 30550753 -70829768 - L1MA4 LINE L1 -6 6294 5711 303 220 0 181 chr15 30550753 30550830 -70829691 - MIR SINE MIR -76 186 97 2782 215 23 0 chr15 30552700 30553262 -70827259 - L1MD3 LINE L1 0 7995 7421 250 243 40 14 chr15 30553267 30553341 -70827180 - MLT1F1 LTR MaLR -443 124 64 1184 243 11 8 chr15 30553387 30553654 -70826867 - L1MD3 LINE L1 -1023 6972 6705 29 21 0 21 chr15 30553855 30553875 -70826646 + AT_rich Low_complexity Low_complexity 1 20 -26 842 240 12 0 chr15 30553875 30554046 -70826475 + FAM SINE Alu 1 173 -2 29 21 0 21 chr15 30554046 30554072 -70826449 + AT_rich Low_complexity Low_complexity 20 46 0 1268 131 27 0 chr15 30554487 30554708 -70825813 + L1 LINE L1 4382 4608 -1538 10531 229 27 31 chr15 30554710 30555081 -70825440 - L1PA12 LINE L1 -2471 5113 4742 2602 64 0 0 chr15 30555081 30555392 -70825129 - AluY SINE Alu 0 311 1 10531 229 27 31 chr15 30555392 30555672 -70824849 - L1PA12 LINE L1 -2842 4742 4462 4664 36 0 2 chr15 30555672 30556228 -70824293 + L1PA5 LINE L1 5593 6147 -7 10531 229 27 31 chr15 30556228 30556354 -70824167 - L1PA12 LINE L1 -3122 4462 4337 2041 141 0 0 chr15 30556354 30556664 -70823857 - AluSx SINE Alu 0 310 1 10531 229 27 31 chr15 30556664 30559665 -70820856 - L1PA12 LINE L1 -3247 4337 1 843 168 46 55 chr15 30559949 30560187 -70820334 - L1MC5 LINE L1 -113 7848 7613 212 100 0 0 chr15 30560709 30560739 -70819782 - L2 LINE L2 -8 3305 3276 321 278 18 31 chr15 30562067 30562207 -70818314 - MIR SINE MIR -9 199 63 470 304 98 16 chr15 30562210 30562763 -70817758 - L1M4 LINE L1 -1781 4365 3658 1068 191 125 78 chr15 30562764 30563173 -70817348 - LTR37B LTR ERV1 -2 466 39 192 192 96 39 chr15 30564103 30564155 -70816366 - L2 LINE L2 -8 3264 3210 21 71 0 0 chr15 30564174 30564216 -70816305 + AT_rich Low_complexity Low_complexity 1 42 0 2146 111 23 13 chr15 30564921 30565227 -70815294 - AluSq SINE Alu -3 310 2 21 71 0 0 chr15 30566061 30566103 -70814418 + AT_rich Low_complexity Low_complexity 1 42 0 410 231 0 13 chr15 30566542 30566620 -70813901 - L2 LINE L2 -2 3270 3194 27 29 0 0 chr15 30566742 30566776 -70813745 + AT_rich Low_complexity Low_complexity 1 34 0 482 240 137 73 chr15 30566890 30567203 -70813318 - L1ME4a LINE L1 0 6121 5789 315 314 90 47 chr15 30567315 30567889 -70812632 - L1ME4a LINE L1 -1310 4836 4224 24 32 0 0 chr15 30569381 30569412 -70811109 + AT_rich Low_complexity Low_complexity 1 31 0 200 250 59 73 chr15 30571707 30571775 -70808746 - L2 LINE L2 -11 3261 3195 1893 166 7 7 chr15 30573054 30573362 -70807159 - AluJo SINE Alu -4 308 1 22 56 0 0 chr15 30574153 30574189 -70806332 + AT_rich Low_complexity Low_complexity 1 36 0 33 0 0 0 chr15 30574900 30574933 -70805588 + AT_rich Low_complexity Low_complexity 1 33 0 252 0 0 0 chr15 30576963 30576991 -70803530 + (T)n Simple_repeat Simple_repeat 1 28 0 2620 37 0 0 chr15 30579847 30580144 -70800377 + AluY SINE Alu 1 297 -14 1167 234 32 41 chr15 30580432 30580631 -70799890 + L2 LINE L2 2423 2619 -695 2224 99 3 3 chr15 30580631 30580924 -70799597 - AluSq SINE Alu -20 293 1 1167 234 32 41 chr15 30580924 30581040 -70799481 + L2 LINE L2 2619 2735 -579 1348 175 91 29 chr15 30581414 30581688 -70798833 - AluJo SINE Alu -21 291 1 725 326 23 16 chr15 30581698 30581956 -70798565 - MIR SINE MIR 0 262 3 198 276 300 15 chr15 30582108 30582235 -70798286 + MIR SINE MIR 7 150 -64 330 348 89 0 chr15 30582634 30582769 -70797752 - L2 LINE L2 0 3272 3126 22 0 0 0 chr15 30583140 30583162 -70797359 + AT_rich Low_complexity Low_complexity 1 22 0 2543 65 3 0 chr15 30583361 30583668 -70796853 - AluSq SINE Alu -5 308 1 1639 160 91 9 chr15 30583823 30584141 -70796380 + MER2 DNA MER2_type 1 344 0 299 80 0 0 chr15 30586339 30586389 -70794132 + Alu SINE Alu 250 299 -1 1777 155 26 16 chr15 30587050 30587354 -70793167 - AluJo SINE Alu -5 307 1 2439 55 0 7 chr15 30587367 30587660 -70792861 - AluY SINE Alu -16 295 5 213 94 0 0 chr15 30588360 30588392 -70792129 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 183 256 0 0 chr15 30588402 30588441 -70792080 - L2 LINE L2 -48 3224 3186 215 364 57 0 chr15 30590440 30590528 -70789993 - L2 LINE L2 -24 3248 3156 2413 60 0 0 chr15 30591541 30591872 -70788649 + AluY SINE Alu 1 331 0 23 33 0 0 chr15 30592554 30592584 -70787937 + AT_rich Low_complexity Low_complexity 1 30 0 256 362 91 9 chr15 30592651 30592872 -70787649 - L3b LINE CR1 -157 1426 1188 1958 34 151 8 chr15 30593124 30593389 -70787132 - AluY SINE Alu -8 303 1 2535 45 0 29 chr15 30593439 30593751 -70786770 - AluY SINE Alu -8 303 1 537 321 21 21 chr15 30594487 30594680 -70785841 - MIR SINE MIR -57 205 13 192 40 0 0 chr15 30594899 30594924 -70785597 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 727 294 30 21 chr15 30595506 30595697 -70784824 + MIR SINE MIR 2 197 -65 1237 219 88 12 chr15 30595697 30596016 -70784505 - MER2 DNA MER2_type 0 344 2 727 294 30 21 chr15 30596016 30596059 -70784462 + MIR SINE MIR 197 238 -24 2080 154 45 38 chr15 30596089 30596280 -70784241 + MSTB LTR MaLR 1 189 -237 2302 95 7 0 chr15 30596280 30596586 -70783935 + AluSx SINE Alu 1 308 -4 2080 154 45 38 chr15 30596586 30596791 -70783730 + MSTB LTR MaLR 189 400 -26 1893 85 7 44 chr15 30596808 30597101 -70783420 - L1PB1 LINE L1 -3 7567 7286 * 7989 88 4 14 chr15 30597100 30598571 -70781950 + L1PA8 LINE L1 4190 5651 -521 2369 71 0 3 chr15 30598571 30598868 -70781653 - AluY SINE Alu -15 296 1 7989 88 4 14 chr15 30598868 30599382 -70781139 + L1PA8 LINE L1 5651 6169 -3 5739 169 17 0 chr15 30599386 30601092 -70779429 - L1PB1 LINE L1 -280 7290 5557 270 88 14 0 chr15 30601092 30601134 -70779387 + MSTB LTR MaLR 380 427 -1 8931 165 36 17 chr15 30601135 30602421 -70778100 + MSTB-int LTR MaLR 1 1326 -325 2171 116 0 7 chr15 30602421 30602724 -70777797 + AluSc SINE Alu 1 301 -8 8931 165 36 17 chr15 30602724 30603057 -70777464 + MSTB-int LTR MaLR 1326 1651 0 2366 172 32 2 chr15 30603058 30603465 -70777056 + MSTB LTR MaLR 2 420 -6 1446 170 91 65 chr15 30603470 30603811 -70776710 + MLT1A2 LTR MaLR 25 374 0 1294 51 0 0 chr15 30604610 30604768 -70775753 - L1PA3 LINE L1 -2 6153 5996 1688 230 8 0 chr15 30605291 30605682 -70774839 - L1PB1 LINE L1 -3137 4428 4035 1571 117 8 30 chr15 30605685 30605951 -70774570 - L1PB1 LINE L1 -4250 3315 3056 1206 178 14 0 chr15 30605955 30606169 -70774352 - AluJb SINE Alu -10 302 86 17848 154 36 7 chr15 30606170 30609147 -70771374 - L1PB1 LINE L1 -4501 3064 2 2221 170 24 19 chr15 30609147 30609571 -70770950 - MSTB LTR MaLR 0 426 1 628 285 86 77 chr15 30609571 30609827 -70770694 - L2 LINE L2 -2404 910 649 2224 120 0 3 chr15 30609827 30610135 -70770386 + AluSg SINE Alu 1 307 -3 628 285 86 77 chr15 30610135 30610215 -70770306 - L2 LINE L2 -2665 649 571 538 284 94 13 chr15 30610287 30610553 -70769968 + L1MC4a LINE L1 5536 5774 -347 2008 146 0 3 chr15 30610553 30610854 -70769667 + AluSq SINE Alu 1 300 -13 538 284 94 13 chr15 30610854 30610910 -70769611 + L1MC4a LINE L1 5774 5824 -297 637 320 173 18 chr15 30611220 30611660 -70768861 + L2 LINE L2 2806 3313 0 258 253 104 50 chr15 30612741 30612923 -70767598 + LTR16A1 LTR ERVL 181 372 -85 2536 48 0 10 chr15 30613884 30614195 -70766326 + AluY SINE Alu 1 308 -3 338 188 0 26 chr15 30615353 30615470 -70765051 + GA-rich Low_complexity Low_complexity 1 114 0 2659 88 58 21 chr15 30616156 30616588 -70763933 + LTR7 LTR ERV1 1 448 -2 16621 89 8 10 chr15 30616590 30619704 -70760817 + HERVH LTR ERV1 1 2987 -4726 871 128 20 0 chr15 30619698 30619846 -70760675 + HERVH LTR ERV1 3140 3290 -4423 * 870 149 0 7 chr15 30619836 30619984 -70760537 + HERVH LTR ERV1 3492 3638 -4075 * 1121 144 3 4 chr15 30619974 30620335 -70760186 + HERVH LTR ERV1 4744 5149 -2564 1226 134 23 9 chr15 30620336 30620553 -70759968 + HERVH LTR ERV1 5600 5819 -1894 2496 63 45 13 chr15 30620553 30620931 -70759590 + HERVH LTR ERV1 7324 7713 0 2638 97 58 21 chr15 30620931 30621363 -70759158 + LTR7 LTR ERV1 1 448 -2 461 327 67 0 chr15 30622316 30622481 -70758040 + MIR3 SINE MIR 23 198 -10 2510 50 0 0 chr15 30622760 30623057 -70757464 - AluY SINE Alu -8 303 7 2053 72 72 6 chr15 30623413 30623777 -70756744 + LTR7 LTR ERV1 1 448 -2 241 184 61 0 chr15 30623823 30623872 -70756649 - L2 LINE L2 0 3313 3262 2873 157 48 35 chr15 30625658 30626283 -70754238 + MER39 LTR ERV1 75 707 0 22 0 0 0 chr15 30626329 30626351 -70754170 + AT_rich Low_complexity Low_complexity 1 22 0 222 130 19 37 chr15 30627383 30627402 -70753119 + A-rich Low_complexity Low_complexity 5 23 -34 2394 61 0 49 chr15 30627402 30627729 -70752792 + AluY SINE Alu 1 311 0 222 130 19 37 chr15 30627729 30627763 -70752758 + A-rich Low_complexity Low_complexity 23 57 0 24 32 0 0 chr15 30628275 30628306 -70752215 + AT_rich Low_complexity Low_complexity 1 31 0 419 85 0 0 chr15 30628727 30628786 -70751735 - L1PA16 LINE L1 -9 6157 6099 204 311 70 70 chr15 30628905 30629162 -70751359 + L2 LINE L2 2635 2891 -423 1773 122 72 4 chr15 30629383 30629645 -70750876 + AluSq SINE Alu 6 285 -28 186 43 0 0 chr15 30629645 30629668 -70750853 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 468 239 103 0 chr15 30629694 30629811 -70750710 - MIR SINE MIR -27 235 107 429 148 0 12 chr15 30629893 30629974 -70750547 + MER103 DNA DNA 8 87 -79 184 255 59 20 chr15 30630051 30630102 -70750419 - MER5C DNA MER1_type -271 53 1 248 311 14 0 chr15 30630563 30630637 -70749884 + MIR3 SINE MIR 118 192 -16 2021 108 90 58 chr15 30632188 30632622 -70747899 - LTR7 LTR ERV1 -2 448 1 306 244 25 17 chr15 30633435 30633554 -70746967 + (TA)n Simple_repeat Simple_repeat 2 121 0 1824 178 45 7 chr15 30633568 30633989 -70746532 - L1MC3 LINE L1 -35 7750 7314 24 0 0 0 chr15 30634993 30635017 -70745504 + AT_rich Low_complexity Low_complexity 1 24 0 306 0 0 0 chr15 30635292 30635326 -70745195 + (TG)n Simple_repeat Simple_repeat 1 34 0 471 326 80 0 chr15 30635968 30636143 -70744378 - MIR3 SINE MIR -3 205 17 2188 99 7 0 chr15 30636396 30636689 -70743832 + AluSg SINE Alu 1 295 -15 2405 86 3 0 chr15 30637630 30637933 -70742588 - AluSg SINE Alu -6 304 1 64 50 0 0 chr15 30637981 30638080 -70742441 + AT_rich Low_complexity Low_complexity 1 99 0 1931 154 0 0 chr15 30639090 30639375 -70741146 + AluJo SINE Alu 12 296 -16 1423 54 0 0 chr15 30639954 30640122 -70740399 + AluY SINE Alu 1 168 -143 623 197 47 8 chr15 30640241 30640394 -70740127 - L1MC2 LINE L1 0 6333 6175 965 161 103 179 chr15 30640395 30640824 -70739697 - MSTD LTR MaLR 0 396 1 2548 223 164 19 chr15 30640875 30641576 -70738945 - MSTD-int LTR MaLR 0 1735 933 3317 198 18 31 chr15 30641624 30642353 -70738168 - MSTD-int LTR MaLR -970 765 45 4264 86 16 80 chr15 30642353 30643063 -70737458 - MER4A LTR ERV1 0 664 1 3317 198 18 31 chr15 30643063 30643107 -70737414 - MSTD-int LTR MaLR -1690 45 2 1169 226 77 64 chr15 30643107 30643445 -70737076 - MSTD LTR MaLR -2 394 49 2301 79 0 0 chr15 30643445 30643736 -70736785 + AluY SINE Alu 1 291 -20 1169 226 77 64 chr15 30643736 30643786 -70736735 - MSTD LTR MaLR -347 49 1 911 169 0 6 chr15 30643786 30643964 -70736557 - L1MC2 LINE L1 -162 6182 6006 199 292 0 0 chr15 30644198 30644246 -70736275 + L2 LINE L2 3020 3067 -205 193 243 54 54 chr15 30644264 30644338 -70736183 - L2 LINE L2 0 3313 3240 1915 152 0 32 chr15 30644741 30645050 -70735471 - AluJo SINE Alu -12 300 2 902 108 0 38 chr15 30645572 30645757 -70734764 + (TTC)n Simple_repeat Simple_repeat 2 179 0 1878 133 31 3 chr15 30645758 30646167 -70734354 - AluSg SINE Alu 0 417 1 342 0 0 0 chr15 30646330 30646368 -70734153 + (CA)n Simple_repeat Simple_repeat 2 39 0 37 23 0 0 chr15 30647117 30647161 -70733360 + AT_rich Low_complexity Low_complexity 1 44 0 2079 159 10 0 chr15 30647374 30647682 -70732839 - AluJo SINE Alu -1 311 1 2445 113 8 24 chr15 30647832 30648202 -70732319 + THE1B LTR MaLR 1 364 0 392 314 127 37 chr15 30657163 30657462 -70723059 - L2 LINE L2 0 3313 2988 573 289 250 22 chr15 30657749 30658257 -70722264 + L2 LINE L2 178 801 -2513 350 263 51 51 chr15 30658264 30658481 -70722040 - MER112 DNA MER1_type -12 248 32 2102 90 0 60 chr15 30658483 30658809 -70721712 - AluY SINE Alu 0 308 1 1577 290 108 101 chr15 30658848 30659372 -70721149 + L2 LINE L2 807 1326 -1988 1346 7 0 0 chr15 30659372 30659518 -70721003 - AluYb8 SINE Alu -16 302 157 1577 290 108 101 chr15 30659518 30660604 -70719917 + L2 LINE L2 1326 2603 -711 386 321 66 29 chr15 30662214 30662488 -70718033 + L2 LINE L2 2982 3265 -48 268 306 10 10 chr15 30662541 30662639 -70717882 - L2 LINE L2 -674 2640 2543 901 309 139 23 chr15 30662679 30663203 -70717318 - L2 LINE L2 -351 2963 2379 468 197 111 0 chr15 30663780 30663897 -70716624 + MER94 DNA DNA 4 133 -1 28 22 0 22 chr15 30664245 30664258 -70716263 + AT_rich Low_complexity Low_complexity 1 13 -32 2078 118 0 10 chr15 30664258 30664547 -70715974 + AluSx SINE Alu 1 286 -26 28 22 0 22 chr15 30664547 30664579 -70715942 + AT_rich Low_complexity Low_complexity 13 45 0 41 0 0 0 chr15 30665875 30665916 -70714605 + AT_rich Low_complexity Low_complexity 1 41 0 296 368 7 15 chr15 30666728 30666864 -70713657 - MIR3 SINE MIR -50 158 24 1091 262 86 66 chr15 30669691 30670282 -70710239 + L1MC4 LINE L1 7297 7899 -143 203 272 12 0 chr15 30670292 30670373 -70710148 + (TA)n Simple_repeat Simple_repeat 2 83 0 1622 152 12 0 chr15 30670562 30670806 -70709715 + AluJb SINE Alu 1 247 -65 225 0 0 0 chr15 30670806 30670831 -70709690 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 803 110 59 0 chr15 30670860 30670996 -70709525 + L1MA7 LINE L1 6148 6291 0 303 219 406 0 chr15 30672608 30672731 -70707790 + MER5B DNA MER1_type 1 173 -5 2250 84 0 39 chr15 30673340 30673674 -70706847 + AluSp SINE Alu 1 313 0 998 250 49 46 chr15 30674237 30674521 -70706000 + L3 LINE CR1 1292 1576 -1 195 100 0 0 chr15 30674574 30674604 -70705917 + (A)n Simple_repeat Simple_repeat 1 30 0 3794 165 26 32 chr15 30675282 30675518 -70705003 - L1 LINE L1 -1183 4963 4727 2031 132 0 17 chr15 30675518 30675813 -70704708 + AluSx SINE Alu 1 290 -22 3794 165 26 32 chr15 30675813 30676346 -70704175 - L1 LINE L1 -1419 4727 4199 2127 174 7 7 chr15 30676348 30676779 -70703742 + L1MA4 LINE L1 4973 5403 -743 9113 108 14 1 chr15 30676794 30678051 -70702470 + HSMAR1 DNA Mariner 2 1274 -13 4725 163 13 5 chr15 30678054 30678909 -70701612 + L1MA4 LINE L1 5434 6295 -5 556 287 117 30 chr15 30678913 30679302 -70701219 + L1ME LINE L1 924 1512 -4904 411 289 53 41 chr15 30679306 30679549 -70700972 + L1ME LINE L1 1550 1809 -4628 1842 149 13 13 chr15 30679549 30679850 -70700671 + AluJb SINE Alu 1 301 -11 411 289 53 41 chr15 30679850 30679872 -70700649 + L1ME LINE L1 1809 1829 -4608 821 149 29 6 chr15 30679874 30680048 -70700473 + GA-rich Low_complexity Low_complexity 1 178 0 332 279 9 65 chr15 30680048 30680263 -70700258 + L1ME LINE L1 1826 2028 -4579 515 268 77 5 chr15 30680606 30680838 -70699683 + L1ME LINE L1 2411 2624 -3802 945 270 105 0 chr15 30680854 30681224 -70699297 + L1ME LINE L1 2698 3106 -3320 31 0 0 0 chr15 30681341 30681372 -70699149 + AT_rich Low_complexity Low_complexity 1 31 0 1910 150 3 0 chr15 30682032 30682319 -70698202 + AluSx SINE Alu 1 288 -24 34 24 0 0 chr15 30682335 30682376 -70698145 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr15 30683371 30683392 -70697129 + AT_rich Low_complexity Low_complexity 1 21 0 1523 167 67 90 chr15 30683505 30683937 -70696584 - LTR8A LTR ERV1 -305 422 1 950 210 23 78 chr15 30683937 30684246 -70696275 + L1ME3A LINE L1 5879 6170 0 1985 203 96 84 chr15 30684359 30685077 -70695444 - LTR8A LTR ERV1 0 727 1 357 267 159 20 chr15 30685217 30685412 -70695109 - HAL1 LINE L1 -1158 1349 1128 734 237 155 0 chr15 30686560 30686779 -70693742 + MIR SINE MIR 5 257 -5 433 289 54 89 chr15 30687238 30687608 -70692913 + HAL1 LINE L1 817 1173 -1334 1659 280 63 20 chr15 30687722 30688733 -70691788 + L1ME LINE L1 4842 5894 -556 1768 163 10 20 chr15 30689013 30689308 -70691213 - AluJo SINE Alu -19 293 2 524 273 136 38 chr15 30689408 30689672 -70690849 - L2 LINE L2 -94 3219 2930 1994 91 0 25 chr15 30689910 30690185 -70690336 - AluY SINE Alu -10 301 34 481 236 87 0 chr15 30690223 30690350 -70690171 + MIR SINE MIR 16 153 -55 21 0 0 0 chr15 30690681 30690702 -70689819 + AT_rich Low_complexity Low_complexity 1 21 0 186 167 0 0 chr15 30690915 30690951 -70689570 + CT-rich Low_complexity Low_complexity 1 36 0 404 331 31 0 chr15 30690973 30691100 -70689421 + L2 LINE L2 3180 3310 -3 1897 115 33 63 chr15 30691334 30691700 -70688821 - THE1A LTR MaLR 0 355 1 25 0 0 0 chr15 30691981 30692006 -70688515 + AT_rich Low_complexity Low_complexity 1 25 0 790 310 67 28 chr15 30694117 30694504 -70686017 - LTR16C LTR ERVL 0 491 90 26 50 0 0 chr15 30694732 30694772 -70685749 + AT_rich Low_complexity Low_complexity 1 40 0 252 307 16 55 chr15 30695200 30695327 -70685194 + MIR SINE MIR 134 255 -7 2883 77 5 0 chr15 30696234 30696610 -70683911 + L1PA11 LINE L1 5530 5907 -267 11658 114 34 52 chr15 30696959 30699950 -70680571 - L1PA11 LINE L1 0 6174 3221 8768 31 1 0 chr15 30699950 30701542 -70678979 + L1PA3 LINE L1 4337 5930 -225 709 281 109 13 chr15 30701646 30702259 -70678262 - L1M4 LINE L1 -2655 3491 2820 1598 175 35 0 chr15 30702334 30702648 -70677873 - L1MB2 LINE L1 -25 5970 5646 762 163 16 0 chr15 30702649 30702778 -70677743 - AluJb SINE Alu -181 131 1 10948 218 39 29 chr15 30702785 30704749 -70675772 - L1MB2 LINE L1 -341 5651 3708 2030 132 10 10 chr15 30704749 30705060 -70675461 - AluSx SINE Alu -1 311 1 10948 218 39 29 chr15 30705060 30707044 -70673477 - L1MB2 LINE L1 -2284 3708 1642 1555 195 26 20 chr15 30707044 30707346 -70673175 - AluJo SINE Alu -8 304 1 10948 218 39 29 chr15 30707346 30707372 -70673149 - L1MB2 LINE L1 -4350 1642 1618 14575 38 2 1 chr15 30707611 30710155 -70670366 - L1PA4 LINE L1 -5 6150 3607 * 20056 73 2 0 chr15 30710151 30712751 -70667770 - L1PA4 LINE L1 -3535 2611 7 7654 146 26 10 chr15 30712754 30714243 -70666278 - L1PBa LINE L1 -4098 2765 1093 2638 228 89 21 chr15 30714247 30715097 -70665424 - L1PBa LINE L1 -5818 1045 138 2074 259 39 34 chr15 30715104 30715787 -70664734 - L1MB2 LINE L1 -4796 1095 417 1385 316 64 58 chr15 30715804 30716694 -70663827 - L1M3a LINE L1 -5226 729 2 * 2454 252 26 19 chr15 30716692 30717476 -70663045 - L1M4c LINE L1 -4522 1379 400 350 293 18 61 chr15 30717634 30717798 -70662723 - L1M4c LINE L1 -5487 404 248 326 317 86 62 chr15 30717907 30718197 -70662324 - L1MB2 LINE L1 -5503 388 92 934 287 58 37 chr15 30718291 30719164 -70661357 - L1MEc LINE L1 -3316 2899 2041 370 241 70 70 chr15 30719337 30719537 -70660984 - L1MEc LINE L1 -4443 1772 1574 630 277 89 29 chr15 30719854 30720353 -70660168 - L1MEc LINE L1 -4669 1637 1112 547 226 19 45 chr15 30720599 30720754 -70659767 + L2 LINE L2 3163 3313 0 315 0 0 0 chr15 30721556 30721591 -70658930 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr15 30721818 30721840 -70658681 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr15 30722441 30722468 -70658053 + AT_rich Low_complexity Low_complexity 1 27 0 25 83 0 0 chr15 30723000 30723060 -70657461 + AT_rich Low_complexity Low_complexity 1 60 0 6129 181 36 15 chr15 30725040 30726865 -70653656 + L1MC1 LINE L1 4463 6328 -5 21 0 0 0 chr15 30729065 30729086 -70651435 + AT_rich Low_complexity Low_complexity 1 21 0 27495 35 4 0 chr15 30731480 30735395 -70645126 - L1PA4 LINE L1 -214 5941 2018 208 275 55 22 chr15 30735545 30735636 -70644885 + L2 LINE L2 3220 3313 0 3472 136 45 7 chr15 30735737 30736317 -70644204 + MER7C DNA MER2_type 1 602 0 242 226 19 0 chr15 30736329 30736382 -70644139 + (CATA)n Simple_repeat Simple_repeat 1 54 0 347 60 20 0 chr15 30736681 30736731 -70643790 + (TCCA)n Simple_repeat Simple_repeat 2 52 0 807 221 0 0 chr15 30737243 30737401 -70643120 - FRAM SINE Alu -18 158 1 6631 65 8 2 chr15 30737469 30738366 -70642155 + L1PA7 LINE L1 5264 6165 0 900 203 145 0 chr15 30738369 30738576 -70641945 - MLT1D LTR MaLR -124 381 145 248 253 96 82 chr15 30739618 30739764 -70640757 + MIR3 SINE MIR 51 198 -10 196 383 0 0 chr15 30740210 30740270 -70640251 + L2 LINE L2 3252 3311 -2 2055 57 57 37 chr15 30741521 30741818 -70638703 + AluY SINE Alu 1 303 -8 207 0 0 0 chr15 30741818 30741841 -70638680 + (CA)n Simple_repeat Simple_repeat 2 24 0 285 295 16 66 chr15 30742758 30742880 -70637641 - L2 LINE L2 0 3272 3157 246 246 58 0 chr15 30743740 30743809 -70636712 - L2 LINE L2 -1082 2232 2160 327 253 89 0 chr15 30743830 30743909 -70636612 - MER20 DNA MER1_type -110 109 24 1120 88 0 0 chr15 30743909 30744057 -70636464 + AluSp/q SINE Alu 162 309 -4 228 233 0 0 chr15 30744084 30744127 -70636394 - LTR33 LTR ERVL -153 368 326 7251 40 8 0 chr15 30744131 30745136 -70635385 + L1PA7 LINE L1 5135 6146 -8 21 0 0 0 chr15 30746259 30746280 -70634241 + AT_rich Low_complexity Low_complexity 1 21 0 1779 214 92 83 chr15 30747046 30747325 -70633196 + L1MC5 LINE L1 7025 7300 -661 883 179 40 30 chr15 30747325 30747526 -70632995 + MER3 DNA MER1_type 3 205 -4 1779 214 92 83 chr15 30747526 30748138 -70632383 + L1MC5 LINE L1 7300 7924 -37 302 212 153 17 chr15 30748241 30748359 -70632162 + L1MB8 LINE L1 93 226 -6633 2709 215 75 68 chr15 30748708 30749490 -70631031 + L1MB8 LINE L1 5511 6312 -677 2358 104 0 7 chr15 30749490 30749798 -70630723 + AluSg SINE Alu 5 310 0 2709 215 75 68 chr15 30749798 30750474 -70630047 + L1MB8 LINE L1 6312 6982 -7 1437 225 70 100 chr15 30750556 30751115 -70629406 - MLT1E LTR MaLR 0 593 1 896 235 20 20 chr15 30751304 30751508 -70629013 - MIR SINE MIR 0 262 59 1873 139 65 46 chr15 30752259 30752307 -70628214 - THE1C LTR MaLR 0 375 329 1874 138 76 17 chr15 30752307 30752661 -70627860 - THE1C LTR MaLR 0 375 1 1873 139 65 46 chr15 30752661 30752980 -70627541 - THE1C LTR MaLR -46 329 1 6952 118 10 27 chr15 30752980 30754059 -70626462 - THE1C-int LTR MaLR 0 1580 520 15523 61 1 1 chr15 30754159 30756105 -70624416 - L1P LINE L1 -4193 1953 7 468 349 92 56 chr15 30756659 30757391 -70623130 - L2 LINE L2 -3 3269 2530 1257 226 173 119 chr15 30757407 30757921 -70622600 - MER39 LTR ERV1 0 707 1 201 345 14 36 chr15 30757930 30758069 -70622452 - L2 LINE L2 -811 2503 2368 518 276 174 5 chr15 30758443 30758639 -70621882 + MIR SINE MIR 20 248 -14 709 264 48 60 chr15 30758697 30758947 -70621574 + MIR SINE MIR 2 248 -14 199 314 0 58 chr15 30759173 30759259 -70621262 - L3 LINE CR1 -314 1263 1183 27 29 0 0 chr15 30760780 30760814 -70619707 + AT_rich Low_complexity Low_complexity 1 34 0 183 304 133 44 chr15 30760862 30761020 -70619501 + L2 LINE L2 2332 2503 -811 21 0 0 0 chr15 30761439 30761460 -70619061 + AT_rich Low_complexity Low_complexity 1 21 0 1435 285 168 12 chr15 30761529 30761989 -70618532 + HAL1 LINE L1 11 582 -1925 423 0 0 0 chr15 30761989 30762036 -70618485 + (CA)n Simple_repeat Simple_repeat 2 48 0 1435 285 168 12 chr15 30762036 30762157 -70618364 + HAL1 LINE L1 582 683 -1824 275 269 39 29 chr15 30762190 30762294 -70618227 + MER21B LTR ERV1 1 105 -758 * 3754 221 55 9 chr15 30762293 30763090 -70617431 + MER21B LTR ERV1 19 852 -11 3682 256 78 43 chr15 30763096 30764666 -70615855 + HAL1 LINE L1 740 2364 -143 261 396 0 0 chr15 30765376 30765535 -70614986 + (TGG)n Simple_repeat Simple_repeat 1 159 0 411 278 93 0 chr15 30766853 30767004 -70613517 + L1ME4a LINE L1 5594 5758 -363 281 249 72 50 chr15 30767103 30767284 -70613237 + L1ME4a LINE L1 5807 5991 -130 7791 138 17 10 chr15 30767488 30767628 -70612893 - L1MA2 LINE L1 -103 6201 6063 1538 199 20 13 chr15 30767628 30767929 -70612592 - AluJb SINE Alu -9 303 1 7791 138 17 10 chr15 30767929 30770052 -70610469 - L1MA2 LINE L1 -241 6063 3918 477 338 154 40 chr15 30770470 30771196 -70609325 - L2 LINE L2 -514 2800 1992 352 350 10 0 chr15 30771436 30771536 -70608985 + L2 LINE L2 3197 3297 -16 1623 298 95 81 chr15 30771637 30773518 -70607003 - L2 LINE L2 -106 3207 1238 189 329 47 24 chr15 30774513 30774598 -70605923 + MIR3 SINE MIR 85 171 -37 27 108 0 0 chr15 30774773 30774884 -70605637 + AT_rich Low_complexity Low_complexity 1 111 0 6075 166 37 5 chr15 30775866 30777278 -70603243 + L1MC1 LINE L1 4873 6322 -11 385 347 39 20 chr15 30777282 30777844 -70602677 - L1MEd LINE L1 -3386 2743 2171 290 273 86 65 chr15 30778628 30779046 -70601475 - L1MEd LINE L1 -4882 1237 811 1219 88 82 0 chr15 30780163 30780345 -70600176 + MER30 DNA MER1_type 1 197 -33 339 25 0 0 chr15 30783177 30783217 -70597304 + (CA)n Simple_repeat Simple_repeat 2 41 0 5715 204 23 49 chr15 30783579 30784623 -70595898 + L1 LINE L1 2146 3216 -2930 224 30 30 0 chr15 30784623 30784656 -70595865 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1891 114 7 4 chr15 30784662 30784934 -70595587 - AluSg SINE Alu -37 273 1 5715 204 23 49 chr15 30784934 30785424 -70595097 + L1 LINE L1 3221 3647 -2499 561 368 79 21 chr15 30785802 30786221 -70594300 - L2 LINE L2 -458 2856 2414 6076 167 25 17 chr15 30786539 30788750 -70591771 - L1MA9 LINE L1 -7 6305 4078 263 188 43 0 chr15 30789712 30789781 -70590740 + (TA)n Simple_repeat Simple_repeat 2 73 0 339 96 0 0 chr15 30789785 30789837 -70590684 + (TG)n Simple_repeat Simple_repeat 2 53 0 284 86 0 57 chr15 30789900 30789970 -70590551 + (TA)n Simple_repeat Simple_repeat 2 67 0 183 162 0 0 chr15 30791126 30791163 -70589358 + A-rich Low_complexity Low_complexity 1 37 0 633 214 10 112 chr15 30792303 30792509 -70588012 - MARNA DNA Mariner -65 521 337 356 270 100 87 chr15 30792700 30793000 -70587521 - L3 LINE CR1 -173 1404 1101 1069 329 29 27 chr15 30793270 30793753 -70586768 - L3 LINE CR1 -566 1011 528 207 0 0 0 chr15 30795076 30795099 -70585422 + (CAAAAA)n Simple_repeat Simple_repeat 1 23 0 211 349 46 37 chr15 30795494 30795603 -70584918 - MIR SINE MIR -79 129 20 1273 79 0 0 chr15 30795914 30796078 -70584443 - AluY SINE Alu -18 293 130 438 242 0 76 chr15 30796078 30796235 -70584286 + MER5B DNA MER1_type 34 178 0 1215 135 17 59 chr15 30796923 30797160 -70583361 + L1PA15 LINE L1 5938 6164 -1 683 265 110 0 chr15 30797616 30797816 -70582705 - MER58A DNA MER1_type -2 222 1 754 219 11 38 chr15 30797824 30798007 -70582514 - MER5B DNA MER1_type 0 178 1 1763 190 0 3 chr15 30798881 30799192 -70581329 - AluJb SINE Alu 0 312 3 1028 190 25 0 chr15 30799323 30799523 -70580998 + MER57A LTR ERV1 3 207 -196 1868 147 60 9 chr15 30799534 30799868 -70580653 + MER61C LTR ERV1 84 434 0 596 213 14 118 chr15 30799868 30800101 -70580420 + MER61C-int LTR ERV1 2 470 -5032 302 264 0 23 chr15 30800218 30800305 -70580216 + MER61C-int LTR ERV1 272 356 -4861 2328 57 0 0 chr15 30800306 30800639 -70579882 + AluY SINE Alu 2 334 0 379 125 0 0 chr15 30800656 30800712 -70579809 + Alu SINE Alu 237 292 -8 429 141 141 58 chr15 30800712 30800833 -70579688 + MER61C-int LTR ERV1 347 477 -4740 979 117 113 27 chr15 30800861 30801097 -70579424 + MER61C-int LTR ERV1 695 4128 -1089 * 2984 165 68 26 chr15 30801095 30802365 -70578156 + MER61C-int LTR ERV1 499 4918 -299 696 130 0 0 chr15 30802376 30802484 -70578037 - AluSg/x SINE Alu -10 300 193 2590 153 7 15 chr15 30802484 30802963 -70577558 + MER61C-int LTR ERV1 1213 2010 -3576 1942 153 32 3 chr15 30802950 30803297 -70577224 + MER61C-int LTR ERV1 4041 4397 -3140 * 7365 126 23 27 chr15 30803289 30804761 -70575760 + MER61C-int LTR ERV1 2831 5217 0 560 189 18 0 chr15 30804776 30804887 -70575634 + MER61C LTR ERV1 84 196 -238 6993 59 1 5 chr15 30804887 30805938 -70574583 + L1PA7 LINE L1 5102 6149 -5 4230 177 35 25 chr15 30806013 30807183 -70573338 + L1MB8 LINE L1 4999 6176 -2 566 289 81 60 chr15 30807376 30807822 -70572699 + LTR68 LTR ERV1 12 466 -274 3958 141 74 16 chr15 30809552 30810254 -70570267 + Tigger2 DNA MER2_type 2 744 -1974 1648 171 43 0 chr15 30810340 30810639 -70569882 - AluJo SINE Alu 0 312 1 1575 128 12 0 chr15 30810639 30810882 -70569639 + Tigger2 DNA MER2_type 2473 2718 0 2203 72 0 4 chr15 30810991 30811269 -70569252 - AluY SINE Alu -14 297 21 394 235 12 0 chr15 30812624 30812705 -70567816 + L1MC5 LINE L1 6712 6793 -1168 599 226 5 115 chr15 30812709 30812926 -70567595 + L1ME3A LINE L1 5698 5890 -280 21 0 0 0 chr15 30812973 30812994 -70567527 + AT_rich Low_complexity Low_complexity 1 21 0 326 319 60 42 chr15 30815460 30815626 -70564895 + MIR SINE MIR 20 188 -74 742 251 172 52 chr15 30815636 30815853 -70564668 + L2 LINE L2 2453 2642 -672 2426 66 0 0 chr15 30815853 30816156 -70564365 + AluY SINE Alu 4 306 -5 742 251 172 52 chr15 30816156 30816344 -70564177 + L2 LINE L2 2642 2907 -407 218 225 0 0 chr15 30816326 30816366 -70564155 + L2 LINE L2 3008 3047 -266 * 188 277 21 0 chr15 30816403 30816450 -70564071 + L2 LINE L2 3216 3263 -9 * 219 284 74 12 chr15 30816448 30816529 -70563992 - MIR SINE MIR -152 110 25 234 0 0 0 chr15 30816607 30816633 -70563888 + (TC)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr15 30817997 30818020 -70562501 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr15 30818144 30818180 -70562341 + AT_rich Low_complexity Low_complexity 1 36 0 265 279 77 87 chr15 30819562 30819874 -70560647 + L3 LINE CR1 631 939 -638 189 94 0 0 chr15 30820581 30820613 -70559908 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 2338 76 0 0 chr15 30820617 30820907 -70559614 - AluSg SINE Alu -20 290 1 1668 144 58 17 chr15 30821084 30821376 -70559145 - AluSx SINE Alu -8 304 1 1358 147 5 23 chr15 30821501 30821719 -70558802 - AluSx SINE Alu -98 214 1 674 281 75 20 chr15 30821736 30821935 -70558586 + MIR SINE MIR 43 252 -10 293 181 0 12 chr15 30821959 30822028 -70558493 + (CTA)n Simple_repeat Simple_repeat 2 71 -12 1141 186 115 50 chr15 30822028 30822351 -70558170 + MER2 DNA MER2_type 1 344 0 293 181 0 12 chr15 30822351 30822364 -70558157 + (CTA)n Simple_repeat Simple_repeat 71 83 0 311 256 78 32 chr15 30822886 30823062 -70557459 - L1MA10 LINE L1 -1 6333 5990 1420 182 14 120 chr15 30823217 30823635 -70556886 - MLT1A2 LTR MaLR 0 374 1 257 324 116 31 chr15 30823637 30823896 -70556625 - L2 LINE L2 -997 2317 2037 309 376 108 9 chr15 30823956 30824169 -70556352 - MIR SINE MIR -9 253 20 212 250 75 38 chr15 30824719 30824799 -70555722 - MIR SINE MIR -49 213 131 1841 107 44 7 chr15 30825191 30825494 -70555027 - AluSg SINE Alu 0 313 1 1707 263 82 26 chr15 30826106 30826983 -70553538 + L2 LINE L2 2384 3311 -2 755 294 119 36 chr15 30827308 30827886 -70552635 + L1ME4a LINE L1 5495 6120 -1 198 304 43 75 chr15 30827969 30828130 -70552391 - L2 LINE L2 0 3313 3158 2234 102 3 0 chr15 30828135 30828429 -70552092 + AluSg SINE Alu 1 295 -15 645 228 34 7 chr15 30830176 30830325 -70550196 + AluJb SINE Alu 137 289 -23 27 0 0 0 chr15 30830325 30830352 -70550169 + AT_rich Low_complexity Low_complexity 1 27 0 5444 144 135 19 chr15 30830738 30831406 -70549115 - Tigger3b DNA MER2_type -1811 1217 628 2206 116 0 3 chr15 30831406 30831717 -70548804 + AluSx SINE Alu 3 312 0 5444 144 135 19 chr15 30831717 30832139 -70548382 - Tigger3b DNA MER2_type -2400 628 1 463 291 55 22 chr15 30832277 30832459 -70548062 - MIR SINE MIR -28 234 47 369 313 125 90 chr15 30832802 30832907 -70547614 - L2 LINE L2 -356 2958 2858 1972 129 0 7 chr15 30832907 30833228 -70547293 + AluSq SINE Alu 1 319 0 369 313 125 90 chr15 30833228 30833376 -70547145 - L2 LINE L2 -456 2858 2717 601 98 0 0 chr15 30833376 30833468 -70547053 - L1MB3 LINE L1 -12 6171 6080 369 313 125 90 chr15 30833468 30834050 -70546471 - L2 LINE L2 -597 2717 2062 2161 83 0 4 chr15 30834050 30834326 -70546195 + AluSx SINE Alu 14 288 -24 369 313 125 90 chr15 30834326 30834693 -70545828 - L2 LINE L2 -1252 2062 1710 326 279 115 36 chr15 30835102 30835267 -70545254 + MIR SINE MIR 36 213 -49 537 188 0 0 chr15 30836136 30836237 -70544284 + FAM SINE Alu 83 183 -2 1008 192 211 11 chr15 30836273 30836637 -70543884 - LTR33A LTR ERVL 0 523 87 253 226 206 10 chr15 30836887 30836989 -70543532 - L2 LINE L2 -6 3307 3186 755 258 131 7 chr15 30837747 30838030 -70542491 + L1MC4 LINE L1 5584 5901 -1907 405 0 0 0 chr15 30838035 30838080 -70542441 + (TG)n Simple_repeat Simple_repeat 1 45 0 218 317 37 24 chr15 30839991 30840073 -70540448 - L2 LINE L2 -86 3186 3104 28 0 0 0 chr15 30840179 30840207 -70540314 + AT_rich Low_complexity Low_complexity 1 28 0 335 326 11 0 chr15 30840312 30840401 -70540120 + MIR3 SINE MIR 67 156 -52 444 67 0 0 chr15 30842467 30842527 -70537994 + (CA)n Simple_repeat Simple_repeat 1 60 0 2657 109 5 29 chr15 30843224 30843635 -70536886 - THE1C-int LTR MaLR -1177 403 3 1581 184 73 20 chr15 30843639 30843993 -70536528 - THE1C LTR MaLR -2 373 1 201 147 0 0 chr15 30845509 30845543 -70534978 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 1699 177 101 22 chr15 30846097 30846464 -70534057 - MSTD LTR MaLR 0 396 1 264 77 26 0 chr15 30846815 30846854 -70533667 - MLT2B1 LTR ERVL 0 520 481 369 0 0 0 chr15 30846857 30846898 -70533623 + (CA)n Simple_repeat Simple_repeat 2 42 0 227 235 0 7 chr15 30846912 30847048 -70533473 + (TA)n Simple_repeat Simple_repeat 1 135 0 300 309 21 0 chr15 30847048 30847145 -70533376 + L1MC4 LINE L1 6611 6709 -1333 230 163 41 0 chr15 30847153 30847202 -70533319 + L1MC4 LINE L1 6653 6703 -1339 1932 175 112 25 chr15 30847232 30847645 -70532876 - MLT2B1 LTR ERVL -13 541 43 754 255 22 81 chr15 30847915 30848186 -70532335 - MIR SINE MIR -1 261 7 567 241 87 51 chr15 30849262 30849515 -70531006 + MIR SINE MIR 1 262 0 2030 273 83 23 chr15 30850075 30850405 -70530116 + L1ME4a LINE L1 3932 4241 -1905 1965 155 28 36 chr15 30850405 30850798 -70529723 + MLT1B LTR MaLR 1 390 0 2030 273 83 23 chr15 30850798 30851505 -70529016 + L1ME4a LINE L1 4241 5147 -999 427 240 47 18 chr15 30851522 30851581 -70528940 + L1ME4a LINE L1 5219 5275 -895 2015 119 7 7 chr15 30851581 30851876 -70528645 + AluSq SINE Alu 1 295 -18 216 0 0 0 chr15 30851876 30851900 -70528621 + (TA)n Simple_repeat Simple_repeat 2 25 0 427 240 47 18 chr15 30851900 30852085 -70528436 + L1ME4a LINE L1 5274 5469 -701 271 299 61 100 chr15 30852092 30852601 -70527920 + L2 LINE L2 2825 3313 0 683 227 0 0 chr15 30854137 30854269 -70526252 + FLAM_A SINE Alu 2 133 0 1712 100 128 0 chr15 30856077 30856350 -70524171 - AluSx SINE Alu 0 305 1 281 190 20 40 chr15 30857535 30857635 -70522886 + L1MC5 LINE L1 7828 7925 -36 202 288 0 0 chr15 30857639 30857698 -70522823 + A-rich Low_complexity Low_complexity 2 60 0 249 167 0 0 chr15 30858214 30858268 -70522253 + (TA)n Simple_repeat Simple_repeat 1 54 0 770 135 71 0 chr15 30859060 30859201 -70521320 - MIR SINE MIR -65 197 47 200 258 93 52 chr15 30859232 30859329 -70521192 + L2 LINE L2 2167 2267 -1047 200 325 26 39 chr15 30859429 30859583 -70520938 + L2 LINE L2 2702 2853 -461 204 305 171 0 chr15 30859854 30859959 -70520562 + L2 LINE L2 3191 3313 0 21 0 0 0 chr15 30862613 30862634 -70517887 + AT_rich Low_complexity Low_complexity 1 21 0 287 203 13 0 chr15 30863152 30863231 -70517290 + (TA)n Simple_repeat Simple_repeat 1 80 0 1556 205 10 0 chr15 30865243 30865541 -70514980 + AluJo SINE Alu 1 301 -11 484 207 207 7 chr15 30866341 30866486 -70514035 + MER5A DNA MER1_type 9 182 -7 712 282 46 18 chr15 30868093 30868419 -70512102 + L1ME4a LINE L1 5562 5896 -225 21 36 0 0 chr15 30868553 30868581 -70511940 + AT_rich Low_complexity Low_complexity 1 28 0 180 290 43 43 chr15 30870381 30870450 -70510071 + L2 LINE L2 3225 3293 -20 1329 223 18 7 chr15 30870622 30870750 -70509771 + AluJo SINE Alu 1 126 -186 2482 75 0 0 chr15 30870750 30871058 -70509463 + AluY SINE Alu 1 308 -3 1329 223 18 7 chr15 30871058 30871207 -70509314 + AluJo SINE Alu 126 281 -31 564 289 147 5 chr15 30871666 30871870 -70508651 - MIR SINE MIR -2 260 28 21 82 0 0 chr15 30873218 30873267 -70507254 + AT_rich Low_complexity Low_complexity 1 49 0 291 270 67 22 chr15 30873412 30873501 -70507020 - L2 LINE L2 -8 3264 3172 368 322 75 7 chr15 30874164 30874310 -70506211 - MIR SINE MIR -57 205 50 212 175 0 0 chr15 30875531 30875571 -70504950 + A-rich Low_complexity Low_complexity 1 40 0 189 74 0 0 chr15 30877806 30877833 -70502688 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 318 316 171 5 chr15 30878110 30878303 -70502218 - L1ME4a LINE L1 -135 5986 5762 548 293 103 18 chr15 30878309 30878635 -70501886 - L1ME4a LINE L1 -436 5685 5309 1062 165 127 24 chr15 30879360 30879651 -70500870 - MER5C DNA MER1_type 0 324 4 561 216 181 21 chr15 30879860 30880063 -70500458 + MIR SINE MIR 33 262 0 209 321 71 27 chr15 30880303 30880487 -70500034 - L2 LINE L2 -11 3302 3111 1190 173 0 10 chr15 30880948 30881156 -70499365 + AluJb SINE Alu 83 288 -24 216 267 0 0 chr15 30882588 30882633 -70497888 - MIR SINE MIR -61 147 103 338 196 110 69 chr15 30883946 30884119 -70496402 + MER112 DNA MER1_type 33 212 -48 1814 125 194 8 chr15 30884398 30884759 -70495762 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr15 30885155 30885177 -70495344 + AT_rich Low_complexity Low_complexity 1 22 0 1959 122 17 10 chr15 30886789 30887077 -70493444 - AluSx SINE Alu -22 290 1 251 338 88 40 chr15 30887111 30887259 -70493262 - L2 LINE L2 0 3272 3118 287 366 59 30 chr15 30887639 30888011 -70492510 - L2 LINE L2 -656 2658 2276 249 302 0 0 chr15 30888060 30888113 -70492408 + polypurine Low_complexity Low_complexity 4 56 0 2100 126 0 10 chr15 30888129 30888431 -70492090 + AluSq SINE Alu 1 299 -14 59 38 0 0 chr15 30888940 30889020 -70491501 + AT_rich Low_complexity Low_complexity 1 80 0 718 259 72 56 chr15 30889268 30889403 -70491118 + HAL1 LINE L1 791 922 -1585 2356 90 3 0 chr15 30889403 30889713 -70490808 + AluSp SINE Alu 1 311 -2 718 259 72 56 chr15 30889713 30890079 -70490442 + HAL1 LINE L1 922 1300 -1207 431 306 53 34 chr15 30890162 30890368 -70490153 - MLT1K LTR MaLR -236 352 143 878 267 120 6 chr15 30890447 30890806 -70489715 + HAL1 LINE L1 1385 1784 -723 31 26 0 0 chr15 30891873 30891911 -70488610 + AT_rich Low_complexity Low_complexity 1 38 0 829 285 64 27 chr15 30892953 30893283 -70487238 + L2 LINE L2 2967 3308 -5 292 172 62 0 chr15 30894596 30894660 -70485861 + L1ME LINE L1 5773 5840 -281 226 319 90 0 chr15 30894730 30894874 -70485647 + MER103 DNA DNA 9 165 -1 23 0 0 0 chr15 30897249 30897272 -70483249 + AT_rich Low_complexity Low_complexity 1 23 0 276 312 130 47 chr15 30897385 30897600 -70482921 + MIR SINE MIR 30 262 0 28 29 0 0 chr15 30898112 30898147 -70482374 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr15 30898157 30898182 -70482339 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr15 30898192 30898214 -70482307 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr15 30898225 30898246 -70482275 + (TA)n Simple_repeat Simple_repeat 1 21 0 418 107 13 13 chr15 30898508 30898583 -70481938 + (TA)n Simple_repeat Simple_repeat 2 76 0 1534 76 5 0 chr15 30899581 30899791 -70480730 + L1PA7 LINE L1 5941 6151 -3 432 303 74 0 chr15 30901012 30901174 -70479347 + MER5B DNA MER1_type 2 175 -3 737 277 214 21 chr15 30902088 30902815 -70477706 - L2 LINE L2 -5 3308 2450 323 246 0 0 chr15 30902819 30902884 -70477637 + MIR SINE MIR 181 245 -17 4187 112 19 6 chr15 30903071 30903707 -70476814 - LTR9B LTR ERV1 0 644 1 1075 255 105 21 chr15 30904959 30905339 -70475182 - LTR16B LTR ERVL -2 462 51 423 292 23 38 chr15 30905462 30905751 -70474770 - MERVL LTR ERVL -204 5281 4557 701 356 25 13 chr15 30905871 30906267 -70474254 - ERVL LTR ERVL -895 4869 4469 389 251 49 77 chr15 30906290 30906473 -70474048 - LTR16B LTR ERVL -284 180 3 725 214 98 6 chr15 30907443 30907616 -70472905 - MIR SINE MIR -69 193 5 279 251 147 80 chr15 30907871 30908034 -70472487 - MER102b DNA MER1_type -9 332 159 1947 156 0 7 chr15 30908034 30908336 -70472185 + AluJo SINE Alu 1 300 -12 322 278 220 16 chr15 30908602 30908793 -70471728 + MIR SINE MIR 2 231 -31 323 192 19 115 chr15 30908793 30908897 -70471624 + L1MEc LINE L1 2052 2145 -4251 1942 137 30 3 chr15 30908901 30909200 -70471321 + AluSx SINE Alu 1 307 -5 1082 205 87 17 chr15 30909234 30909590 -70470931 + L1MEc LINE L1 2103 2483 -3913 346 274 52 22 chr15 30909706 30909841 -70470680 - L1MC4a LINE L1 -1871 5937 5799 442 326 10 16 chr15 30910499 30910686 -70469835 - MIR SINE MIR -51 211 29 229 208 0 21 chr15 30911549 30911597 -70468924 + MLT1I LTR MaLR 324 370 -39 382 358 49 57 chr15 30911914 30912072 -70468449 + L2 LINE L2 3029 3186 -86 791 305 99 25 chr15 30912072 30912557 -70467964 - LTR33 LTR ERVL 0 521 1 382 358 49 57 chr15 30912557 30912644 -70467877 + L2 LINE L2 3186 3272 0 1532 178 22 29 chr15 30913238 30913552 -70466969 + AluJo SINE Alu 1 312 0 26 0 0 0 chr15 30914975 30915001 -70465520 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr15 30916673 30916694 -70463827 + AT_rich Low_complexity Low_complexity 1 21 0 566 238 42 36 chr15 30916759 30916927 -70463594 + MIR SINE MIR 84 252 -10 2345 152 35 62 chr15 30917036 30917549 -70462972 + MLT1D LTR MaLR 7 505 0 220 242 16 0 chr15 30917565 30917627 -70462894 + (TTAA)n Simple_repeat Simple_repeat 2 64 0 264 295 161 18 chr15 30917980 30918092 -70462429 + MIR SINE MIR 20 147 -115 1912 187 15 47 chr15 30919338 30919739 -70460782 - MLT1B LTR MaLR 0 390 3 2214 80 43 13 chr15 30919802 30920103 -70460418 - AluY SINE Alu -1 310 1 5385 188 22 27 chr15 30924028 30924739 -70455782 - L1MB1 LINE L1 -3 6165 5452 369 0 0 0 chr15 30924739 30924780 -70455741 + (TG)n Simple_repeat Simple_repeat 2 42 0 5385 188 22 27 chr15 30924780 30926075 -70454446 - L1MB1 LINE L1 -716 5452 4166 417 256 113 0 chr15 30926076 30926209 -70454312 - MIR SINE MIR -48 214 67 1828 195 39 68 chr15 30926361 30926879 -70453642 + MLT1D LTR MaLR 1 503 -2 24 77 0 0 chr15 30927089 30927141 -70453380 + AT_rich Low_complexity Low_complexity 1 52 0 781 285 14 14 chr15 30927354 30927575 -70452946 - MIR SINE MIR 0 262 42 1795 176 17 36 chr15 30928382 30928422 -70452099 + L1PB4 LINE L1 5737 5776 -380 396 0 0 0 chr15 30928422 30928466 -70452055 + (TG)n Simple_repeat Simple_repeat 2 45 0 1795 176 17 36 chr15 30928466 30928719 -70451802 + L1PB4 LINE L1 5776 6031 -125 2254 109 0 0 chr15 30928719 30929021 -70451500 + AluSx SINE Alu 1 302 -10 1795 176 17 36 chr15 30929021 30929129 -70451392 + L1PB4 LINE L1 6031 6139 -17 259 274 0 0 chr15 30929839 30929901 -70450620 - L2 LINE L2 0 3313 3252 243 362 43 35 chr15 30929956 30930072 -70450449 + MIR SINE MIR 17 133 -75 210 306 0 42 chr15 30930716 30930788 -70449733 + L2 LINE L2 3200 3268 -4 344 311 156 0 chr15 30930834 30931001 -70449520 + MIR SINE MIR 65 257 -5 227 268 110 24 chr15 30931094 30931176 -70449345 + MIR3 SINE MIR 115 203 -5 21 0 0 0 chr15 30931756 30931777 -70448744 + AT_rich Low_complexity Low_complexity 1 21 0 514 121 48 0 chr15 30932345 30932428 -70448093 + L1MA2 LINE L1 6218 6304 0 2159 131 0 0 chr15 30933212 30933518 -70447003 + AluSq SINE Alu 1 306 -7 183 100 0 0 chr15 30933560 30933590 -70446931 + (TG)n Simple_repeat Simple_repeat 2 31 0 263 289 61 18 chr15 30934287 30934401 -70446120 + L1MC4 LINE L1 6614 6732 -1310 234 186 0 0 chr15 30935480 30935523 -70444998 + L2 LINE L2 3264 3306 -7 495 293 56 98 chr15 30935732 30936254 -70444267 - MLT1L LTR MaLR -7 608 5 375 289 151 44 chr15 30938249 30938685 -70441836 + L1ME LINE L1 5320 5802 -319 205 167 0 0 chr15 30940652 30940688 -70439833 + GA-rich Low_complexity Low_complexity 1 36 0 1891 157 3 0 chr15 30943380 30943674 -70436847 - AluSx SINE Alu -16 296 2 379 305 61 39 chr15 30943927 30944589 -70435932 - L1MEd LINE L1 -4516 1613 930 1822 42 0 42 chr15 30944755 30944992 -70435529 - AluY SINE Alu -5 306 80 228 333 19 37 chr15 30945209 30945317 -70435204 + MLT1I LTR MaLR 103 208 -201 3768 170 42 0 chr15 30945326 30946016 -70434505 - L1PA16 LINE L1 -6 6160 5442 1526 84 55 8 chr15 30946060 30946298 -70434223 + LTR7 LTR ERV1 164 412 -38 282 326 73 45 chr15 30946315 30946493 -70434028 + MLT1J2 LTR MaLR 268 450 0 2342 123 8 35 chr15 30947317 30947691 -70432830 - THE1B LTR MaLR 0 364 1 28 48 0 0 chr15 30947757 30947799 -70432722 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr15 30947859 30947894 -70432627 + AT_rich Low_complexity Low_complexity 1 35 0 673 338 113 31 chr15 30948004 30948481 -70432040 - LTR33 LTR ERVL 0 521 6 22 35 0 0 chr15 30948555 30948584 -70431937 + AT_rich Low_complexity Low_complexity 1 29 0 180 411 22 35 chr15 30949107 30949338 -70431183 + L2 LINE L2 2816 3043 -229 207 286 54 0 chr15 30950005 30950061 -70430460 + L2 LINE L2 3210 3268 -4 21 0 0 0 chr15 30950983 30951004 -70429517 + AT_rich Low_complexity Low_complexity 1 21 0 1049 239 42 24 chr15 30951137 30951622 -70428899 - MLT1E LTR MaLR -8 585 1 3492 169 77 54 chr15 30952730 30953389 -70427132 - L1MB5 LINE L1 -17 6157 5476 261 83 0 0 chr15 30953389 30953425 -70427096 + (TG)n Simple_repeat Simple_repeat 1 36 0 3492 169 77 54 chr15 30953425 30953557 -70426964 - L1MB5 LINE L1 -698 5476 5348 448 224 61 7 chr15 30953594 30953741 -70426780 - LTR37A LTR ERV1 -59 367 213 2549 242 36 36 chr15 30953916 30954632 -70425889 - MER21B LTR ERV1 -11 852 137 1628 167 9 3 chr15 30954816 30955134 -70425387 + L1MA4 LINE L1 5970 6289 -11 266 246 33 0 chr15 30955136 30955197 -70425324 + L1MB1 LINE L1 5893 5955 -213 254 305 70 55 chr15 30955207 30955335 -70425186 + L2 LINE L2 3139 3268 -4 320 332 65 33 chr15 30955462 30955676 -70424845 + L2 LINE L2 1951 2171 -1143 4055 175 38 31 chr15 30955951 30956855 -70423666 + L1 LINE L1 3835 4744 -1402 2295 166 30 129 chr15 30956889 30957011 -70423510 - MLT2B2 LTR ERVL -5 510 378 1556 197 0 43 chr15 30957011 30957310 -70423211 + AluJo SINE Alu 1 286 -26 2295 166 30 129 chr15 30957310 30957325 -70423196 - MLT2B2 LTR ERVL -137 378 363 2187 104 3 0 chr15 30957325 30957638 -70422883 + AluSp SINE Alu 1 314 0 243 0 0 0 chr15 30957640 30957667 -70422854 + (TG)n Simple_repeat Simple_repeat 2 28 0 2295 166 30 129 chr15 30957667 30958088 -70422433 - MLT2B2 LTR ERVL -153 362 1 316 360 82 44 chr15 30958088 30958493 -70422028 + L2 LINE L2 2179 2598 -716 286 310 70 45 chr15 30960090 30960290 -70420231 - MIR3 SINE MIR -3 205 1 390 313 125 7 chr15 30960430 30960574 -70419947 - MIR3 SINE MIR -7 201 41 241 315 0 0 chr15 30963655 30963709 -70416812 - MER5A DNA MER1_type -61 128 75 2434 236 63 26 chr15 30963709 30963983 -70416538 - L1MEc LINE L1 -939 5276 5014 411 21 0 0 chr15 30963983 30964031 -70416490 + (TG)n Simple_repeat Simple_repeat 1 48 0 2434 236 63 26 chr15 30964031 30964569 -70415952 - L1MEc LINE L1 -1201 5014 4434 1610 265 44 13 chr15 30964601 30965129 -70415392 - L1ME1 LINE L1 -5 6161 5618 290 200 187 0 chr15 30965129 30965204 -70415317 - L1ME LINE L1 -501 5663 5575 * 1126 240 42 0 chr15 30965203 30965486 -70415035 - L1MEc LINE L1 -1769 4446 4152 * 4219 236 38 33 chr15 30965479 30966933 -70413588 - L1MEc LINE L1 -2458 3757 2297 472 250 23 0 chr15 30967073 30967201 -70413320 - L1MA10 LINE L1 -9 6325 6195 3465 281 79 40 chr15 30967236 30969359 -70411162 - L1MEc LINE L1 -4144 2252 46 213 39 0 0 chr15 30969380 30969406 -70411115 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1621 203 3 11 chr15 30969756 30970073 -70410448 + AluJo SINE Alu 1 315 0 21 36 0 0 chr15 30970141 30970169 -70410352 + AT_rich Low_complexity Low_complexity 1 28 0 1558 93 0 21 chr15 30970635 30970872 -70409649 + L1PA7 LINE L1 5920 6151 -3 5073 186 56 7 chr15 30971260 30972409 -70408112 + L1MD2 LINE L1 5142 6346 -13 341 379 28 0 chr15 30972853 30972998 -70407523 - LTR16A LTR ERVL -293 157 9 5293 72 62 8 chr15 30974331 30975091 -70405430 - L1PA13 LINE L1 -1 6162 5362 1294 173 27 96 chr15 30975091 30975392 -70405129 - AluJo SINE Alu -32 280 1 340 312 0 55 chr15 30975473 30975582 -70404939 + MIR SINE MIR 88 190 -72 1298 168 110 0 chr15 30975807 30976098 -70404423 + MER33 DNA MER1_type 1 323 -1 1034 171 0 0 chr15 30978381 30978545 -70401976 + AluSg/x SINE Alu 132 295 -15 1277 138 0 5 chr15 30978861 30979064 -70401457 - AluSx SINE Alu -7 305 104 672 125 0 0 chr15 30979153 30979249 -70401272 - AluSx SINE Alu -216 96 1 517 264 0 0 chr15 30979346 30979456 -70401065 - MIR SINE MIR -107 155 46 256 228 196 11 chr15 30980244 30980336 -70400185 + L2 LINE L2 3160 3268 -4 228 170 43 0 chr15 30982092 30982139 -70398382 + GA-rich Low_complexity Low_complexity 2 50 0 962 323 48 36 chr15 30982890 30983471 -70397050 - L2 LINE L2 -19 3294 2716 458 333 29 6 chr15 30983794 30983968 -70396553 + MIR SINE MIR 26 203 -59 223 297 0 16 chr15 30985364 30985428 -70395093 + GA-rich Low_complexity Low_complexity 4 66 0 285 308 130 16 chr15 30986573 30986758 -70393763 - L2 LINE L2 0 3313 3108 193 358 62 19 chr15 30987001 30987163 -70393358 + L2 LINE L2 2888 3056 -257 613 296 36 5 chr15 30987472 30987668 -70392853 - LTR16C LTR ERVL -52 439 238 1773 176 6 6 chr15 30988977 30989289 -70391232 + AluJo SINE Alu 1 312 0 986 246 40 12 chr15 30989809 30990061 -70390460 - L1ME1 LINE L1 -24 6142 5884 2029 139 3 3 chr15 30993977 30994322 -70386199 + AluSx SINE Alu 1 345 0 18192 168 18 5 chr15 30994423 30998856 -70381665 + L1PA13 LINE L1 1678 6162 -1 630 241 136 4 chr15 30998980 30999208 -70381313 + MER112 DNA MER1_type 1 258 -2 3739 233 37 11 chr15 30999719 30999994 -70380527 + L1P LINE L1 2168 2435 -3711 180 111 0 0 chr15 30999994 31000021 -70380500 + (TATG)n Simple_repeat Simple_repeat 2 28 0 3739 233 37 11 chr15 31000021 31000789 -70379732 + L1P LINE L1 2435 3241 -2905 4191 125 31 12 chr15 31000789 31001471 -70379050 + L1PA15 LINE L1 5465 6159 -6 3739 233 37 11 chr15 31001471 31001493 -70379028 + L1P LINE L1 3241 3261 -2885 307 200 0 0 chr15 31002341 31002391 -70378130 - L2 LINE L2 -8 3264 3215 281 233 68 0 chr15 31002533 31002606 -70377915 + MLT1J LTR MaLR 107 184 -327 555 245 13 22 chr15 31002680 31002873 -70377648 + MLT1J2 LTR MaLR 265 409 0 366 314 59 8 chr15 31002938 31003056 -70377465 + L2 LINE L2 3190 3313 0 320 339 15 8 chr15 31004155 31004285 -70376236 - MIR3 SINE MIR -69 139 9 207 0 0 0 chr15 31005208 31005231 -70375290 + (T)n Simple_repeat Simple_repeat 1 23 0 518 372 60 0 chr15 31005381 31005733 -70374788 - L2 LINE L2 -214 3099 2728 299 262 8 90 chr15 31005921 31005984 -70374537 - MER94 DNA DNA 0 134 84 2061 130 3 0 chr15 31005984 31006277 -70374244 - AluSc SINE Alu -15 294 1 299 262 8 90 chr15 31006277 31006335 -70374186 - MER94 DNA DNA -50 84 23 244 330 33 0 chr15 31007083 31007174 -70373347 + L2 LINE L2 2929 3022 -250 337 276 122 18 chr15 31008288 31008411 -70372110 + MIR SINE MIR 5 141 -67 583 237 25 97 chr15 31008428 31008706 -70371815 - MER102a DNA MER1_type 0 330 73 253 250 0 0 chr15 31008781 31008833 -70371688 + MIR3 SINE MIR 151 202 -6 2823 80 38 90 chr15 31010542 31011044 -70369477 + SVA Other Other 393 868 -518 1829 102 11 73 chr15 31011201 31011664 -70368857 + SVA Other Other 433 866 -520 31 96 0 0 chr15 31011669 31011763 -70368758 + GC_rich Low_complexity Low_complexity 1 94 0 6499 55 3 38 chr15 31011871 31012744 -70367777 + SVA Other Other 544 1386 0 478 300 82 18 chr15 31013487 31013707 -70366814 - MLT1L LTR MaLR -1 614 381 206 335 220 23 chr15 31014061 31014234 -70366287 + L3b LINE CR1 1372 1578 -5 648 317 53 16 chr15 31014872 31015115 -70365406 - LTR16A LTR ERVL -107 343 92 381 43 0 0 chr15 31015571 31015618 -70364903 + (TTC)n Simple_repeat Simple_repeat 1 47 0 746 263 0 0 chr15 31015624 31015776 -70364745 - FRAM SINE Alu -14 152 1 868 331 43 17 chr15 31015991 31016338 -70364183 - LTR16A LTR ERVL 0 450 95 253 246 72 94 chr15 31016657 31016795 -70363726 + MIR SINE MIR 59 193 -69 184 289 16 117 chr15 31017421 31017549 -70362972 - L2 LINE L2 -10 3262 3148 233 143 0 20 chr15 31017747 31017796 -70362725 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 214 255 0 0 chr15 31018939 31018986 -70361535 - L2 LINE L2 -9 3304 3258 655 254 135 0 chr15 31019390 31019583 -70360938 - MER20 DNA MER1_type 0 219 1 345 342 116 7 chr15 31019631 31019906 -70360615 + L2 LINE L2 2470 2774 -540 521 272 65 50 chr15 31020012 31020291 -70360230 + L1ME1 LINE L1 5878 6160 -6 2001 139 14 0 chr15 31020697 31020991 -70359530 - AluSq SINE Alu -15 298 1 559 252 26 13 chr15 31021271 31021422 -70359099 - L2 LINE L2 -2 3311 3159 332 288 108 36 chr15 31022076 31022215 -70358306 - MIR3 SINE MIR -27 181 33 504 330 43 29 chr15 31022331 31022680 -70357841 + L1MEd LINE L1 12 365 -5754 210 246 31 31 chr15 31023581 31023646 -70356875 - MIR SINE MIR -85 177 113 246 136 0 0 chr15 31025311 31025355 -70355166 + (CA)n Simple_repeat Simple_repeat 2 45 0 410 265 157 64 chr15 31025510 31025714 -70354807 + LTR16C LTR ERVL 70 292 -199 302 150 117 0 chr15 31025716 31025776 -70354745 + LTR16C LTR ERVL 405 471 -20 518 273 48 78 chr15 31025794 31026199 -70354322 + L1MEd LINE L1 789 1161 -4958 2174 131 81 2 chr15 31026199 31026596 -70353925 + MSTA LTR MaLR 1 428 0 518 273 48 78 chr15 31026596 31026629 -70353892 + L1MEd LINE L1 1161 1193 -4926 415 248 78 23 chr15 31026651 31026935 -70353586 + L1M2 LINE L1 1840 2075 -863 228 283 0 0 chr15 31027407 31027460 -70353061 + MIR SINE MIR 83 135 -73 204 239 209 0 chr15 31028441 31028508 -70352013 + L2 LINE L2 3232 3312 -1 245 244 12 12 chr15 31028941 31029023 -70351498 - L1M4 LINE L1 -3152 2994 2913 662 302 87 36 chr15 31029175 31029648 -70350873 - L1M4 LINE L1 -3346 2800 2304 973 279 100 54 chr15 31029654 31030174 -70350347 + MLT1H LTR MaLR 1 544 -5 1012 134 38 0 chr15 31030330 31030487 -70350034 + L1PA16 LINE L1 6002 6164 -2 21 0 0 0 chr15 31030499 31030520 -70350001 + AT_rich Low_complexity Low_complexity 1 21 0 3911 92 75 17 chr15 31031268 31031868 -70348653 - MER41B LTR ERV1 0 635 1 574 309 75 0 chr15 31031896 31032084 -70348437 + MIR SINE MIR 50 251 -11 340 274 30 32 chr15 31032549 31032675 -70347846 + MIR3 SINE MIR 56 183 -25 619 202 0 0 chr15 31033178 31033287 -70347234 - FLAM_C SINE Alu -34 109 1 1794 98 4 15 chr15 31042035 31042309 -70338212 - L1MA2 LINE L1 -8 6296 6026 775 148 74 34 chr15 31044305 31044454 -70336067 + FAM SINE Alu 12 166 -19 473 291 127 19 chr15 31044849 31045062 -70335459 + MIR SINE MIR 25 260 -2 297 109 0 0 chr15 31045269 31045315 -70335206 + (TG)n Simple_repeat Simple_repeat 1 46 0 194 301 215 11 chr15 31045925 31046018 -70334503 - MIR SINE MIR -63 145 34 * 557 268 112 34 chr15 31046000 31046205 -70334316 + MIR SINE MIR 40 260 -2 421 226 17 17 chr15 31046219 31046334 -70334187 + MIR SINE MIR 148 262 0 30 0 0 0 chr15 31046484 31046514 -70334007 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr15 31048702 31048731 -70331790 + AT_rich Low_complexity Low_complexity 1 29 0 2054 121 3 0 chr15 31050996 31051278 -70329243 - AluSx SINE Alu -27 285 3 2332 63 10 3 chr15 31051818 31052118 -70328403 + AluY SINE Alu 1 302 -9 188 262 36 60 chr15 31052439 31052523 -70327998 + MIR SINE MIR 181 262 0 267 31 0 0 chr15 31052572 31052604 -70327917 + (TATAG)n Simple_repeat Simple_repeat 2 33 0 2410 70 3 0 chr15 31052688 31052989 -70327532 - AluY SINE Alu -7 304 3 500 239 51 124 chr15 31057590 31057824 -70322697 + MIR SINE MIR 20 236 -26 1844 169 10 0 chr15 31059476 31059783 -70320738 - AluSx SINE Alu -2 310 1 254 242 45 0 chr15 31060212 31060278 -70320243 - MIR SINE MIR -63 145 77 229 174 0 0 chr15 31060549 31060595 -70319926 + LTR66 LTR ERVL 394 439 -171 301 207 0 0 chr15 31060595 31060653 -70319868 - L1MC4 LINE L1 -1339 6703 6646 180 337 174 10 chr15 31061320 31061418 -70319103 - MIR SINE MIR -56 206 93 226 337 238 10 chr15 31063395 31063588 -70316933 - L3 LINE CR1 -12 1565 1329 284 328 23 8 chr15 31063945 31064076 -70316445 - L2 LINE L2 -630 2684 2552 260 335 116 19 chr15 31064097 31064252 -70316269 + MIR3 SINE MIR 18 187 -21 315 328 116 20 chr15 31064664 31064862 -70315659 - MIR SINE MIR -20 242 26 397 195 58 0 chr15 31065173 31065260 -70315261 - MIR SINE MIR -1 261 170 1350 207 92 12 chr15 31065897 31066235 -70314286 + MLT1A1 LTR MaLR 1 365 0 2140 133 3 3 chr15 31066615 31066924 -70313597 + AluSx SINE Alu 2 310 -2 207 162 0 0 chr15 31066960 31066997 -70313524 + CT-rich Low_complexity Low_complexity 4 40 0 6718 70 5 1 chr15 31067140 31068842 -70311679 - L1PA8 LINE L1 -13 6159 4445 199 258 106 15 chr15 31069433 31069499 -70311022 + MIR SINE MIR 19 90 -118 273 311 54 34 chr15 31069509 31069657 -70310864 - MIR3 SINE MIR -48 160 10 275 288 54 63 chr15 31069661 31069772 -70310749 - L3b LINE CR1 -199 1384 1275 387 308 31 15 chr15 31072264 31072394 -70308127 - MLT1I LTR MaLR -34 375 244 464 203 43 51 chr15 31072414 31072552 -70307969 - MLT1I LTR MaLR -269 140 4 248 288 79 65 chr15 31072769 31072908 -70307613 - MIR SINE MIR -70 192 52 196 263 188 0 chr15 31075491 31075571 -70304950 - MIR3 SINE MIR -7 201 107 502 277 15 31 chr15 31076530 31076660 -70303861 - L2 LINE L2 0 3313 3186 1534 187 29 66 chr15 31077281 31077519 -70303002 + MLT1A1 LTR MaLR 1 221 -144 2470 72 3 0 chr15 31077519 31077825 -70302696 - AluY SINE Alu -4 307 1 1534 187 29 66 chr15 31077825 31077965 -70302556 + MLT1A1 LTR MaLR 221 365 0 2417 142 10 5 chr15 31078656 31079044 -70301477 + MLT1B LTR MaLR 1 390 0 525 115 0 0 chr15 31079184 31079262 -70301259 - MER116 DNA Mariner -2 78 1 489 279 143 7 chr15 31079560 31079714 -70300807 + MER5A DNA MER1_type 13 187 -2 323 297 148 70 chr15 31079747 31079976 -70300545 - L1MC/D LINE L1 -2236 5572 5326 294 29 0 0 chr15 31080401 31080436 -70300085 + (CA)n Simple_repeat Simple_repeat 1 35 0 3279 174 2 19 chr15 31082921 31083536 -70296985 - L1MB7 LINE L1 -20 6164 5561 21 0 0 0 chr15 31083893 31083914 -70296607 + AT_rich Low_complexity Low_complexity 1 21 0 2426 67 0 3 chr15 31085069 31085367 -70295154 + AluY SINE Alu 1 297 -14 700 178 152 65 chr15 31086958 31087071 -70293450 - Tigger6a DNA MER2_type -514 1083 981 2299 39 7 4 chr15 31087071 31087380 -70293141 - AluY SINE Alu 0 310 1 700 178 152 65 chr15 31087380 31087495 -70293026 - Tigger6a DNA MER2_type -616 981 834 1336 161 35 12 chr15 31087496 31087864 -70292657 + Tigger2a DNA MER2_type 1 434 0 1702 160 52 6 chr15 31087876 31088201 -70292320 - Tigger6a DNA MER2_type -252 831 492 1417 169 23 40 chr15 31088206 31088508 -70292013 + MLT1A1 LTR MaLR 15 311 -54 2149 225 36 0 chr15 31088906 31089377 -70291144 - Tigger6a DNA MER2_type -593 490 3 2650 174 44 23 chr15 31089461 31090034 -70290487 - L1MB5 LINE L1 -9 6165 5581 2241 250 77 51 chr15 31090034 31091083 -70289438 - L1ME LINE L1 -479 5691 4670 186 43 0 0 chr15 31091083 31091106 -70289415 + (CCA)n Simple_repeat Simple_repeat 1 23 0 2241 250 77 51 chr15 31091106 31091176 -70289345 - L1ME LINE L1 -1500 4670 4603 1412 209 47 14 chr15 31091176 31091472 -70289049 + AluJo SINE Alu 1 306 -6 2241 250 77 51 chr15 31091472 31091937 -70288584 - L1ME LINE L1 -1567 4603 4058 2466 67 0 13 chr15 31092031 31092346 -70288175 - AluY SINE Alu 0 311 1 1959 149 39 33 chr15 31092389 31092751 -70287770 - THE1B LTR MaLR 0 364 1 316 340 90 38 chr15 31093285 31093573 -70286948 - L2 LINE L2 -459 2855 2553 2690 96 13 0 chr15 31095362 31095748 -70284773 - L1PA13 LINE L1 -2 6161 5771 509 75 0 0 chr15 31095750 31095817 -70284704 - L1PA15 LINE L1 -328 5837 5771 410 122 54 0 chr15 31095819 31095893 -70284628 - L1PA13 LINE L1 -326 5837 5760 224 295 152 0 chr15 31096448 31096553 -70283968 + MIR SINE MIR 56 176 -86 727 330 130 17 chr15 31099686 31100040 -70280481 + L2 LINE L2 2445 2838 -476 418 304 110 42 chr15 31100048 31100285 -70280236 - L2 LINE L2 -20 3252 3000 584 313 97 8 chr15 31100324 31100583 -70279938 - L2 LINE L2 -561 2753 2472 225 236 0 18 chr15 31100703 31100758 -70279763 + L2 LINE L2 2920 2973 -340 1541 158 113 12 chr15 31100761 31101289 -70279232 - LTR9B LTR ERV1 0 644 9 317 316 227 4 chr15 31101313 31101569 -70278952 + L2 LINE L2 3001 3313 0 562 256 20 50 chr15 31101739 31101936 -70278585 + MIR SINE MIR 61 251 -11 581 219 0 7 chr15 31105079 31105230 -70275291 + CT-rich Low_complexity Low_complexity 3 152 0 261 180 0 0 chr15 31106057 31106107 -70274414 + T-rich Low_complexity Low_complexity 1 50 0 196 280 30 76 chr15 31107384 31107516 -70273005 + L2 LINE L2 2938 3063 -209 429 345 41 29 chr15 31109464 31109710 -70270811 - L3b LINE CR1 -173 1410 1162 230 121 0 0 chr15 31111218 31111251 -70269270 - MADE1 DNA Mariner -47 33 1 2245 118 0 0 chr15 31112812 31113116 -70267405 - AluSx SINE Alu -8 304 1 196 208 0 42 chr15 31113780 31113828 -70266693 - L2 LINE L2 -1 3312 3267 274 279 13 0 chr15 31114742 31114821 -70265700 - MIR SINE MIR -15 247 168 1454 250 26 62 chr15 31115175 31115740 -70264781 + Charlie1 DNA MER1_type 1 545 -2216 1297 151 121 4 chr15 31115757 31116029 -70264492 + L1MA9 LINE L1 6007 6310 -2 3357 208 135 52 chr15 31116042 31117142 -70263379 + Charlie1 DNA MER1_type 555 1743 -1018 2129 192 62 16 chr15 31117139 31117638 -70262883 + Charlie1 DNA MER1_type 1954 2475 -286 * 690 304 66 12 chr15 31120071 31120314 -70260207 - MIR SINE MIR 0 262 7 22 35 0 0 chr15 31120920 31120949 -70259572 + AT_rich Low_complexity Low_complexity 1 29 0 315 240 94 82 chr15 31120968 31121139 -70259382 - MIR SINE MIR -1 261 89 2232 109 7 0 chr15 31121290 31121584 -70258937 - AluSc SINE Alu -12 297 2 392 225 101 3 chr15 31122709 31122880 -70257641 + MIR SINE MIR 4 248 -14 658 329 105 10 chr15 31123232 31123815 -70256706 - L2 LINE L2 0 3313 2648 267 278 61 35 chr15 31123909 31124024 -70256497 - MLT1K LTR MaLR -93 495 378 390 222 37 12 chr15 31124376 31124457 -70256064 - L2 LINE L2 -39 3274 3192 1050 263 70 10 chr15 31125570 31125847 -70254674 + LTR41 LTR ERVL 1 296 -477 340 210 222 0 chr15 31125847 31125928 -70254593 + MER45 DNA AcHobo 1 99 -79 227 31 31 0 chr15 31126361 31126393 -70254128 + (TAG)n Simple_repeat Simple_repeat 1 33 0 21 71 0 0 chr15 31127176 31127218 -70253303 + AT_rich Low_complexity Low_complexity 1 42 0 399 327 15 40 chr15 31127404 31127603 -70252918 - L1MEd LINE L1 -4906 1213 1020 235 148 16 16 chr15 31128240 31128301 -70252220 + CT-rich Low_complexity Low_complexity 2 62 0 306 125 0 0 chr15 31128781 31128829 -70251692 + (TG)n Simple_repeat Simple_repeat 1 48 0 193 370 0 0 chr15 31128917 31128990 -70251531 - L2 LINE L2 0 3272 3200 26 64 0 0 chr15 31129728 31129775 -70250746 + AT_rich Low_complexity Low_complexity 1 47 0 183 80 0 0 chr15 31130387 31130412 -70250109 + (T)n Simple_repeat Simple_repeat 1 25 0 206 277 0 0 chr15 31130526 31130573 -70249948 + (CA)n Simple_repeat Simple_repeat 2 48 0 427 160 43 11 chr15 31131990 31132084 -70248437 - MER103 DNA DNA -10 156 60 634 328 4 45 chr15 31132085 31132353 -70248168 + MIR SINE MIR 1 257 -5 762 11 0 0 chr15 31133367 31133454 -70247067 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 1154 115 0 0 chr15 31133457 31133631 -70246890 + L1PA13 LINE L1 5875 6048 -115 186 267 160 0 chr15 31134022 31134097 -70246424 - L2 LINE L2 -214 3058 2972 1688 290 172 13 chr15 31134122 31135119 -70245402 + L2 LINE L2 2133 3267 -5 203 259 0 19 chr15 31135408 31135462 -70245059 + CT-rich Low_complexity Low_complexity 3 55 0 268 305 9 9 chr15 31135564 31135596 -70244925 + (TA)n Simple_repeat Simple_repeat 2 33 -73 1923 146 43 30 chr15 31135596 31135966 -70244555 + THE1C LTR MaLR 1 375 0 268 305 9 9 chr15 31135966 31136038 -70244483 + (TA)n Simple_repeat Simple_repeat 32 106 0 198 167 0 0 chr15 31136847 31136877 -70243644 - MER5A DNA MER1_type -159 30 1 2264 194 71 28 chr15 31139029 31139595 -70240926 - L1MD3 LINE L1 0 7995 7406 384 286 0 0 chr15 31139598 31139682 -70240839 - MLT1F1 LTR MaLR -449 118 35 723 222 56 0 chr15 31139682 31139880 -70240641 - L1MD3 LINE L1 -879 7116 6908 4830 114 12 5 chr15 31139880 31140641 -70239880 - L1MA4A LINE L1 -4 6299 5534 14507 199 27 12 chr15 31140641 31144146 -70236375 - L1 LINE L1 -870 5978 2496 1011 119 62 0 chr15 31144155 31144348 -70236173 - L1MA3 LINE L1 0 6305 6101 1879 116 14 7 chr15 31144348 31144642 -70235879 + L1MA3 LINE L1 5780 6075 -230 * 8275 168 16 12 chr15 31144638 31146076 -70234445 - L1 LINE L1 -4424 2425 983 2217 224 33 88 chr15 31146079 31146863 -70233658 - L1MD3 LINE L1 -1072 6923 6183 2609 243 95 56 chr15 31146945 31147049 -70233472 - L1MCc LINE L1 -3113 3828 3730 2091 128 3 0 chr15 31147049 31147337 -70233184 - AluSx SINE Alu -23 289 1 2609 243 95 56 chr15 31147337 31148302 -70232219 - L1MCc LINE L1 -3211 3730 2804 2213 46 21 25 chr15 31148302 31148616 -70231905 + AluY SINE Alu 1 313 0 2609 243 95 56 chr15 31148616 31148655 -70231866 - L1MCc LINE L1 -4137 2804 2768 2065 116 55 25 chr15 31148655 31149017 -70231504 + THE1C LTR MaLR 1 373 -2 2609 243 95 56 chr15 31149017 31149264 -70231257 - L1MCc LINE L1 -4173 2768 2532 2274 61 3 7 chr15 31149264 31149559 -70230962 + AluY SINE Alu 1 294 -17 2609 243 95 56 chr15 31149559 31150968 -70229553 - L1MCc LINE L1 -4409 2532 854 357 290 81 76 chr15 31151131 31151503 -70229018 - L1MCc LINE L1 -5624 798 429 1836 112 8 0 chr15 31151503 31151752 -70228769 - AluSx SINE Alu -5 307 57 1645 129 8 8 chr15 31151752 31151991 -70228530 - AluSc SINE Alu -68 241 1 357 290 81 76 chr15 31151991 31152078 -70228443 - L1MCc LINE L1 -5992 430 12 2036 110 28 8 chr15 31153403 31153759 -70226762 + L1MA8 LINE L1 5927 6289 -2 843 313 61 10 chr15 31153959 31154269 -70226252 + MLT1J2 LTR MaLR 3 328 -122 2059 122 0 17 chr15 31154612 31155080 -70225441 - AluSx SINE Alu 0 463 1 345 304 66 41 chr15 31155600 31155642 -70224879 - L1MEc LINE L1 -3783 2432 2393 1240 202 73 48 chr15 31155642 31155998 -70224523 - MLT1A1 LTR MaLR 0 365 1 345 304 66 41 chr15 31155998 31156245 -70224276 - L1MEc LINE L1 -3822 2393 2172 442 353 85 28 chr15 31157063 31157930 -70222591 + L1ME4a LINE L1 4372 5301 -845 1021 270 88 19 chr15 31157938 31158468 -70222053 + L1ME4a LINE L1 5332 5912 -209 1979 116 64 59 chr15 31158590 31158978 -70221543 - MLT1B LTR MaLR 0 390 1 2107 88 49 26 chr15 31159068 31159374 -70221147 - AluSp SINE Alu 0 313 1 23 0 0 0 chr15 31159592 31159615 -70220906 + AT_rich Low_complexity Low_complexity 1 23 0 243 157 0 0 chr15 31161401 31161452 -70219069 + GA-rich Low_complexity Low_complexity 2 52 0 371 311 108 0 chr15 31162052 31162219 -70218302 - MIR SINE MIR -39 223 39 21 0 0 0 chr15 31163492 31163513 -70217008 + AT_rich Low_complexity Low_complexity 1 21 0 1760 191 43 3 chr15 31165002 31165353 -70215168 - MLT1A1 LTR MaLR 0 365 1 642 259 138 12 chr15 31166986 31167233 -70213288 - LTR16A1 LTR ERVL -12 445 168 698 188 7 0 chr15 31167424 31167568 -70212953 + L1P LINE L1 4319 4463 -1683 29 70 0 0 chr15 31167568 31167625 -70212896 + AT_rich Low_complexity Low_complexity 1 57 0 959 142 28 28 chr15 31169927 31170103 -70210418 + L1PB4 LINE L1 5979 6154 -2 208 151 19 38 chr15 31170422 31170475 -70210046 + (TA)n Simple_repeat Simple_repeat 1 52 0 199 328 0 0 chr15 31171290 31171351 -70209170 - MIR SINE MIR -139 123 63 33 90 0 0 chr15 31171600 31171689 -70208832 + AT_rich Low_complexity Low_complexity 1 89 0 180 0 0 0 chr15 31172017 31172037 -70208484 + (TG)n Simple_repeat Simple_repeat 1 20 0 1131 195 7 121 chr15 31172045 31172186 -70208335 - AluSp SINE Alu -41 272 183 507 33 0 0 chr15 31172186 31172247 -70208274 + (TG)n Simple_repeat Simple_repeat 2 62 0 1131 195 7 121 chr15 31172247 31172412 -70208109 - AluSp SINE Alu -130 183 1 2835 255 29 43 chr15 31172413 31173264 -70207257 + L2 LINE L2 1993 2831 -483 711 284 30 51 chr15 31173351 31173647 -70206874 + L2 LINE L2 3023 3312 -1 23 33 0 0 chr15 31174913 31174943 -70205578 + AT_rich Low_complexity Low_complexity 1 30 0 264 258 22 11 chr15 31177197 31177286 -70203235 + MLT1F1 LTR MaLR 36 125 -442 2144 199 72 34 chr15 31177472 31178024 -70202497 + L1MC3 LINE L1 7205 7777 -8 472 343 24 94 chr15 31178443 31178816 -70201705 + L2 LINE L2 2918 3264 -8 2774 166 21 52 chr15 31179089 31179310 -70201211 + L1PA16 LINE L1 5570 5796 -370 414 0 0 0 chr15 31179310 31179356 -70201165 + (TG)n Simple_repeat Simple_repeat 2 47 0 2774 166 21 52 chr15 31179356 31179747 -70200774 + L1PA16 LINE L1 5796 6163 -3 194 319 53 71 chr15 31179954 31180067 -70200454 + L3b LINE CR1 1468 1578 -5 2226 158 37 35 chr15 31182629 31183060 -70197461 - MSTB1 LTR MaLR 0 432 1 311 348 58 37 chr15 31183331 31183659 -70196862 + L2 LINE L2 2159 2493 -821 267 288 51 42 chr15 31183803 31183921 -70196600 + L3 LINE CR1 632 750 -827 330 329 147 53 chr15 31184472 31184846 -70195675 + L3 LINE CR1 772 1180 -397 2340 67 10 16 chr15 31184846 31185159 -70195362 + AluY SINE Alu 1 311 0 356 319 9 80 chr15 31185261 31185474 -70195047 - L3 LINE CR1 -410 1167 970 502 332 62 5 chr15 31185491 31185702 -70194819 + L3 LINE CR1 1280 1502 -75 225 200 17 50 chr15 31185819 31185879 -70194642 + Charlie8 DNA MER1_type 2360 2417 0 299 316 188 0 chr15 31186628 31186745 -70193776 + MIR3 SINE MIR 21 159 -49 1061 259 97 43 chr15 31187933 31188326 -70192195 + MLT1J2 LTR MaLR 32 445 -5 706 352 60 45 chr15 31188617 31189395 -70191126 - L2 LINE L2 0 3313 2527 507 247 39 39 chr15 31189395 31189549 -70190972 - L2 LINE L2 -985 2329 2176 354 237 17 42 chr15 31190023 31190141 -70190380 - L1ME3A LINE L1 0 6239 6125 333 269 46 19 chr15 31190214 31190322 -70190199 - L2 LINE L2 -2 3311 3201 212 211 58 0 chr15 31190486 31190538 -70189983 + L2 LINE L2 3218 3272 0 286 303 129 8 chr15 31192510 31192642 -70187879 + MIR SINE MIR 1 148 -114 29 28 0 0 chr15 31198122 31198158 -70182363 + AT_rich Low_complexity Low_complexity 1 36 0 261 291 0 0 chr15 31199756 31199811 -70180710 + L2 LINE L2 3247 3301 -12 356 122 49 12 chr15 31200840 31200922 -70179599 + L1MB7 LINE L1 6100 6184 0 249 351 0 11 chr15 31201060 31201154 -70179367 - MIR SINE MIR -81 127 35 241 130 0 43 chr15 31201701 31201747 -70178774 + MER63 DNA MER1_type 38 707 -129 466 251 142 54 chr15 31201862 31202193 -70178328 + L1ME4a LINE L1 4487 4846 -1300 1118 287 37 41 chr15 31202488 31202924 -70177597 - LTR16C LTR ERVL -23 468 35 583 208 12 24 chr15 31203549 31203717 -70176804 - MER96B DNA MER1_type? -237 180 15 22 0 0 0 chr15 31203886 31203908 -70176613 + AT_rich Low_complexity Low_complexity 1 22 0 439 258 85 50 chr15 31204068 31204351 -70176170 + L1ME4a LINE L1 5550 5842 -279 283 256 0 0 chr15 31208527 31208605 -70171916 + T-rich Low_complexity Low_complexity 1 78 0 393 306 50 33 chr15 31209049 31209170 -70171351 - L2 LINE L2 0 3272 3150 1541 170 10 35 chr15 31209203 31209491 -70171030 - AluJo SINE Alu -31 281 1 231 217 0 0 chr15 31210602 31210662 -70169859 + (TA)n Simple_repeat Simple_repeat 1 60 0 201 213 0 21 chr15 31211149 31211196 -70169325 + (TA)n Simple_repeat Simple_repeat 1 46 0 24 32 0 0 chr15 31213165 31213196 -70167325 + AT_rich Low_complexity Low_complexity 1 31 0 256 200 17 17 chr15 31213404 31213464 -70167057 - L1ME3A LINE L1 -224 6015 5956 6028 160 53 15 chr15 31213547 31214968 -70165553 - L1MC1 LINE L1 -6 6327 4847 304 250 39 39 chr15 31214971 31215207 -70165314 - L1ME3A LINE L1 -730 5509 5228 1268 269 121 26 chr15 31215291 31216660 -70163861 - L1MEc LINE L1 -2814 3401 1941 531 266 126 23 chr15 31217008 31217271 -70163250 - LTR16A1 LTR ERVL 0 457 168 408 167 191 24 chr15 31217442 31217568 -70162953 + Charlie4 DNA MER1_type 20 166 -1795 210 71 0 0 chr15 31218302 31218330 -70162191 + (T)n Simple_repeat Simple_repeat 1 28 0 26 0 0 0 chr15 31218906 31218932 -70161589 + AT_rich Low_complexity Low_complexity 1 26 0 182 312 110 18 chr15 31219794 31219903 -70160618 + MIR SINE MIR 142 260 -2 526 309 62 0 chr15 31220382 31220544 -70159977 - MER63A DNA MER1_type -4 206 35 371 277 20 0 chr15 31221241 31221342 -70159179 - MIR SINE MIR -3 259 157 2208 87 3 10 chr15 31221342 31221651 -70158870 + MER41A LTR ERV1 248 554 0 1392 94 25 0 chr15 31221651 31221853 -70158668 - HSMAR2 DNA Mariner -1095 207 1 308 262 96 3 chr15 31222739 31222868 -70157653 - MIR SINE MIR -64 144 21 273 57 0 0 chr15 31223933 31223968 -70156553 + (T)n Simple_repeat Simple_repeat 1 35 0 2241 78 4 0 chr15 31226125 31226429 -70154092 - AluY SINE Alu 0 305 1 560 238 131 19 chr15 31228742 31228902 -70151619 + MER45A DNA AcHobo 1 178 0 2045 125 3 7 chr15 31229124 31229428 -70151093 + AluSx SINE Alu 1 303 -9 909 298 66 46 chr15 31230829 31231380 -70149141 + L2 LINE L2 2503 3054 -259 6935 77 7 1 chr15 31231411 31232788 -70147733 - L1PA7 LINE L1 -26 6128 4744 * 7999 78 11 3 chr15 31232779 31233865 -70146656 + L1PA7 LINE L1 3641 4735 -1411 655 264 239 27 chr15 31233915 31234354 -70146167 + MLT1H LTR MaLR 2 533 -16 208 250 68 45 chr15 31234974 31235062 -70145459 - L2 LINE L2 0 3313 3224 188 312 101 28 chr15 31236668 31236777 -70143744 + L2 LINE L2 3146 3262 -10 1960 111 116 14 chr15 31236944 31237297 -70143224 - L1MA4A LINE L1 -6 6297 5909 387 262 16 71 chr15 31238436 31238562 -70141959 - L2 LINE L2 -5 3308 3190 340 164 82 91 chr15 31238630 31238740 -70141781 - MER53 DNA DNA 0 189 81 504 284 54 86 chr15 31239134 31239356 -70141165 + MIR SINE MIR 8 222 -40 2062 137 0 3 chr15 31240094 31240394 -70140127 + AluSx SINE Alu 1 299 -13 198 0 0 0 chr15 31241147 31241169 -70139352 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 636 14 0 0 chr15 31241173 31241246 -70139275 - L1PA5 LINE L1 -9 6145 6073 450 0 0 0 chr15 31241542 31241592 -70138929 + (TG)n Simple_repeat Simple_repeat 2 51 0 238 338 0 12 chr15 31241842 31241922 -70138599 - MIR SINE MIR -132 130 52 23 0 0 0 chr15 31242797 31242820 -70137701 + AT_rich Low_complexity Low_complexity 1 23 0 210 314 99 33 chr15 31243289 31243410 -70137111 - L2 LINE L2 -5 3267 3139 2203 102 0 3 chr15 31243726 31244041 -70136480 + AluSq SINE Alu 1 314 0 190 0 0 0 chr15 31244020 31244068 -70136453 + (CAA)n Simple_repeat Simple_repeat 1 48 0 330 180 0 0 chr15 31245023 31245084 -70135437 + L1ME LINE L1 5626 5686 -480 1054 204 82 4 chr15 31245093 31245373 -70135148 - L1ME LINE L1 -581 5585 5284 832 228 129 0 chr15 31245370 31245572 -70134949 - L1MC/D LINE L1 -2042 6161 5934 * 2168 250 82 6 chr15 31245566 31246345 -70134176 - L1MC/D LINE L1 -1534 5030 4193 14289 140 20 22 chr15 31246377 31247332 -70133189 - Tigger1 DNA MER2_type -13 2405 1449 782 181 0 8 chr15 31247332 31247465 -70133056 - FLAM_C SINE Alu -1 132 1 14289 140 20 22 chr15 31247465 31248919 -70131602 - Tigger1 DNA MER2_type -969 1449 1 3894 222 79 35 chr15 31248962 31250660 -70129861 - L1MEc LINE L1 -2422 4142 2411 1349 298 63 20 chr15 31250720 31251250 -70129271 + L2 LINE L2 2765 3312 -1 7160 179 72 21 chr15 31253065 31253171 -70127350 - L1MC3 LINE L1 0 7785 7686 1798 178 0 3 chr15 31253171 31253457 -70127064 + AluJb SINE Alu 1 285 -27 7160 179 72 21 chr15 31253457 31254203 -70126318 - L1MC3 LINE L1 -99 7686 6979 351 0 0 0 chr15 31254203 31254242 -70126279 + (TG)n Simple_repeat Simple_repeat 1 39 0 216 0 0 0 chr15 31254241 31254265 -70126256 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 7160 179 72 21 chr15 31254242 31255001 -70125520 - L1MC3 LINE L1 -806 6979 6115 1173 242 51 23 chr15 31254996 31255347 -70125174 - L1MEc LINE L1 -5116 929 569 * 2358 126 22 3 chr15 31255431 31255787 -70124734 + THE1B LTR MaLR 1 363 -1 293 177 32 0 chr15 31255949 31256011 -70124510 - L1MEc LINE L1 -5086 959 896 1437 264 16 46 chr15 31256017 31256513 -70124008 - L1MEc LINE L1 -5562 483 3 235 301 0 0 chr15 31256549 31256622 -70123899 - MIR SINE MIR -66 196 124 2417 63 3 0 chr15 31256855 31257156 -70123365 + AluY SINE Alu 1 302 -9 356 277 136 35 chr15 31258658 31258863 -70121658 + MIR SINE MIR 32 256 -6 2367 82 3 0 chr15 31259667 31259971 -70120550 - AluY SINE Alu -6 305 1 1171 208 17 97 chr15 31260457 31260818 -70119703 + L1ME1 LINE L1 5501 5832 -334 2228 96 10 13 chr15 31260893 31261205 -70119316 - AluSq SINE Alu -2 311 1 2060 112 39 3 chr15 31262416 31262721 -70117800 - MER7A DNA MER2_type 0 346 33 352 299 84 43 chr15 31262793 31263123 -70117398 - L1ME3A LINE L1 -233 5937 5587 916 265 110 60 chr15 31263123 31263606 -70116915 + MLT1J LTR MaLR 5 511 0 352 299 84 43 chr15 31263606 31263669 -70116852 - L1ME3A LINE L1 -583 5587 5528 197 301 27 0 chr15 31263769 31263842 -70116679 - MIR SINE MIR -62 146 72 340 315 107 0 chr15 31265370 31265519 -70115002 + MIR3 SINE MIR 35 199 -9 244 245 0 0 chr15 31265621 31265674 -70114847 + MLT1I LTR MaLR 72 124 -285 529 186 34 8 chr15 31265849 31265967 -70114554 + L1PA8A LINE L1 6011 6131 0 287 323 0 0 chr15 31266531 31266596 -70113925 - L2 LINE L2 0 3272 3208 365 331 37 7 chr15 31267134 31267270 -70113251 - MIR SINE MIR -121 141 2 2498 191 15 21 chr15 31267445 31267917 -70112604 + MER70A LTR ERVL 4 472 0 21 36 0 0 chr15 31268001 31268029 -70112492 + AT_rich Low_complexity Low_complexity 1 28 0 213 196 0 0 chr15 31268147 31268198 -70112323 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 271 309 201 7 chr15 31270145 31270294 -70110227 - MIR SINE MIR -50 212 35 409 346 67 8 chr15 31270547 31270801 -70109720 + L2 LINE L2 2811 3079 -193 181 365 81 14 chr15 31270839 31270913 -70109608 + L2 LINE L2 3157 3235 -37 2791 146 38 23 chr15 31271002 31271523 -70108998 + L1MB2 LINE L1 5624 6152 -19 1754 159 107 6 chr15 31271524 31271889 -70108632 + L1MA4 LINE L1 5893 6294 -6 1738 53 0 0 chr15 31272303 31272510 -70108011 + AluY SINE Alu 100 306 -5 471 374 20 5 chr15 31272569 31272772 -70107749 - MIR SINE MIR -54 208 3 225 384 66 5 chr15 31272845 31273043 -70107478 + L3b LINE CR1 1243 1452 -131 21 0 0 0 chr15 31273217 31273238 -70107283 + AT_rich Low_complexity Low_complexity 1 21 0 209 179 0 0 chr15 31274797 31274836 -70105685 + (CATA)n Simple_repeat Simple_repeat 1 39 0 432 274 116 7 chr15 31276009 31276155 -70104366 - MIR SINE MIR -53 209 48 509 253 205 9 chr15 31277975 31278204 -70102317 - LTR33A LTR ERVL -16 507 234 880 301 118 22 chr15 31278661 31279163 -70101358 - MLT1L LTR MaLR 0 615 66 1410 215 0 4 chr15 31279316 31279590 -70100931 + AluJo SINE Alu 1 273 -39 312 48 0 0 chr15 31279603 31279645 -70100876 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 252 274 14 14 chr15 31279645 31279718 -70100803 - MIR SINE MIR -172 90 18 189 274 20 0 chr15 31279813 31279864 -70100657 + L2 LINE L2 3220 3271 -1 230 348 113 17 chr15 31280980 31281095 -70099426 - MIR3 SINE MIR -38 170 45 599 301 99 41 chr15 31281272 31281841 -70098680 + MLT1F LTR MaLR 1 595 0 24 32 0 0 chr15 31282627 31282658 -70097863 + AT_rich Low_complexity Low_complexity 1 31 0 237 108 0 0 chr15 31285216 31285253 -70095268 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 228 409 18 18 chr15 31285253 31285417 -70095104 - L2 LINE L2 -7 3265 3102 1532 237 22 14 chr15 31285464 31285835 -70094686 - MLT1A2 LTR MaLR 0 374 1 2698 276 89 71 chr15 31286280 31287162 -70093359 - L2 LINE L2 -36 3277 2368 1598 95 25 8 chr15 31287162 31287404 -70093117 + L1PB2 LINE L1 5906 6151 0 2698 276 89 71 chr15 31287404 31288195 -70092326 - L2 LINE L2 -945 2368 1593 296 239 30 22 chr15 31288321 31288455 -70092066 + (TA)n Simple_repeat Simple_repeat 2 136 0 22 0 0 0 chr15 31289867 31289889 -70090632 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr15 31290014 31290040 -70090481 + AT_rich Low_complexity Low_complexity 1 26 0 233 246 18 0 chr15 31290146 31290203 -70090318 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 323 345 67 67 chr15 31290801 31291039 -70089482 - MIR SINE MIR -5 257 20 1236 238 47 74 chr15 31291077 31291548 -70088973 - L1MD3 LINE L1 -24 7971 7514 345 100 0 0 chr15 31291774 31291824 -70088697 + (TG)n Simple_repeat Simple_repeat 1 50 0 961 196 30 15 chr15 31291832 31292031 -70088490 + MER63A DNA MER1_type 9 210 0 2486 47 0 3 chr15 31292326 31292623 -70087898 + AluY SINE Alu 1 296 -15 1703 218 126 18 chr15 31293193 31293647 -70086874 + MLT1D LTR MaLR 2 504 -1 772 196 0 0 chr15 31293985 31294118 -70086403 + AluJ SINE Alu 1 133 -169 944 200 0 6 chr15 31294176 31294341 -70086180 + AluJ SINE Alu 121 284 -28 194 274 217 28 chr15 31294784 31294890 -70085631 + MIR SINE MIR 17 142 -66 22 0 0 0 chr15 31294923 31294945 -70085576 + AT_rich Low_complexity Low_complexity 1 22 0 391 230 36 97 chr15 31296554 31296719 -70083802 + MIR SINE MIR 52 206 -56 319 357 82 31 chr15 31296743 31296939 -70083582 + MIR SINE MIR 57 262 0 252 0 0 0 chr15 31297630 31297658 -70082863 + (CA)n Simple_repeat Simple_repeat 2 29 0 2102 108 0 4 chr15 31299407 31299685 -70080836 + AluSq SINE Alu 1 277 -36 325 289 39 16 chr15 31299970 31300098 -70080423 + MIR3 SINE MIR 78 208 0 261 385 106 15 chr15 31300482 31300812 -70079709 - L2 LINE L2 -26 3287 2928 502 258 0 8 chr15 31300910 31301042 -70079479 + MER94 DNA DNA 1 131 -3 650 352 112 31 chr15 31301074 31301682 -70078839 - L2 LINE L2 -577 2737 2081 357 248 23 15 chr15 31301774 31301907 -70078614 + LTR16C LTR ERVL 340 473 -18 266 305 153 28 chr15 31301908 31302085 -70078436 - L2 LINE L2 -1238 2076 1878 2880 48 6 0 chr15 31302087 31302443 -70078078 - L1PA7 LINE L1 -267 5887 5530 1467 85 0 5 chr15 31302430 31302631 -70077890 + L1PA7 LINE L1 5880 6079 -75 * 1859 83 4 0 chr15 31302633 31302873 -70077648 + AluY SINE Alu 58 298 -13 183 204 0 0 chr15 31302874 31302918 -70077603 - L2 LINE L2 -1622 1692 1649 643 369 95 7 chr15 31302920 31303459 -70077062 - L2 LINE L2 -1915 1399 814 333 343 86 69 chr15 31303855 31304205 -70076316 + L2 LINE L2 2916 3271 -1 301 343 127 25 chr15 31306169 31306414 -70074107 + L2 LINE L2 530 799 -2515 1869 146 30 3 chr15 31307376 31307671 -70072850 - AluSx SINE Alu -9 303 1 330 319 143 50 chr15 31307701 31308266 -70072255 + L2 LINE L2 1606 2223 -1091 376 259 28 9 chr15 31308436 31308544 -70071977 - MIR SINE MIR -149 113 4 * 432 334 100 46 chr15 31308544 31308936 -70071585 + L2 LINE L2 2338 2776 -538 455 285 32 16 chr15 31308936 31309122 -70071399 + MER5A DNA MER1_type 1 189 0 432 334 100 46 chr15 31309122 31309335 -70071186 + L2 LINE L2 2776 2976 -338 294 350 35 7 chr15 31309839 31309982 -70070539 - MIR SINE MIR -75 187 41 423 0 0 0 chr15 31310599 31310646 -70069875 + (TG)n Simple_repeat Simple_repeat 2 48 0 189 0 0 0 chr15 31311776 31311797 -70068724 + (A)n Simple_repeat Simple_repeat 1 21 0 310 314 107 13 chr15 31313381 31313540 -70066981 - MIR SINE MIR -87 175 2 780 296 76 58 chr15 31313838 31314271 -70066250 - MLT1L LTR MaLR -7 608 168 682 204 109 17 chr15 31314461 31314657 -70065864 - LTR41 LTR ERVL -551 244 2 228 316 25 13 chr15 31315122 31315201 -70065320 - L2 LINE L2 0 3272 3193 236 305 0 12 chr15 31316086 31316168 -70064353 + GA-rich Low_complexity Low_complexity 1 81 0 27 0 0 0 chr15 31316904 31316931 -70063590 + AT_rich Low_complexity Low_complexity 1 27 0 432 0 0 0 chr15 31316987 31317035 -70063486 + (T)n Simple_repeat Simple_repeat 1 48 0 357 267 62 21 chr15 31317071 31317311 -70063210 + L1M4 LINE L1 2841 3090 -3056 1611 278 100 42 chr15 31317436 31317926 -70062595 + L1M4 LINE L1 3514 3974 -2172 5450 131 17 5 chr15 31317926 31319277 -70061244 + L1PA13 LINE L1 4786 6150 -13 1611 278 100 42 chr15 31319277 31320329 -70060192 + L1M4 LINE L1 3974 5132 -1014 21 57 0 0 chr15 31320339 31320374 -70060147 + AT_rich Low_complexity Low_complexity 1 35 0 443 176 29 0 chr15 31320500 31320602 -70059919 + L1MC3 LINE L1 7351 7455 -330 1332 169 72 41 chr15 31320602 31320892 -70059629 + AluJb SINE Alu 1 299 -3 1659 216 8 35 chr15 31321094 31321469 -70059052 - MLT1A1 LTR MaLR 0 365 1 2145 96 0 7 chr15 31321965 31322247 -70058274 - AluSc SINE Alu -10 299 20 324 259 92 87 chr15 31324562 31324747 -70055774 + MLT1H LTR MaLR 107 292 -257 2274 97 7 0 chr15 31325497 31325805 -70054716 + AluSg SINE Alu 1 310 0 2707 36 0 0 chr15 31326220 31326526 -70053995 - AluY SINE Alu -5 306 1 425 237 47 33 chr15 31327656 31327867 -70052654 - L1ME4a LINE L1 0 6121 5908 405 58 0 0 chr15 31328876 31328928 -70051593 + (TG)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr15 31329414 31329436 -70051085 + AT_rich Low_complexity Low_complexity 1 22 0 505 252 37 106 chr15 31332622 31332868 -70047653 - MIR SINE MIR -20 242 14 21 36 0 0 chr15 31332951 31332979 -70047542 + AT_rich Low_complexity Low_complexity 1 28 0 222 233 0 0 chr15 31333051 31333094 -70047427 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 245 272 105 70 chr15 31333118 31333375 -70047146 - L1MC4 LINE L1 -122 7920 7655 375 289 118 54 chr15 31333671 31333875 -70046646 - MIR SINE MIR 0 262 46 363 330 165 0 chr15 31333995 31334177 -70046344 + L2 LINE L2 2557 2768 -546 326 255 21 0 chr15 31334184 31334278 -70046243 - MER5B DNA MER1_type -6 172 77 764 143 69 29 chr15 31334286 31334461 -70046060 - MER53 DNA DNA 0 189 8 297 213 16 0 chr15 31334494 31334555 -70045966 + MER5B DNA MER1_type 117 178 0 888 148 0 7 chr15 31335338 31335473 -70045048 + AluJo SINE Alu 1 134 -178 1836 193 30 30 chr15 31335604 31335720 -70044801 - MLT1A1 LTR MaLR 0 365 250 3362 144 34 0 chr15 31335720 31336256 -70044265 + MER41C LTR ERV1 1 554 0 1836 193 30 30 chr15 31336256 31336501 -70044020 - MLT1A1 LTR MaLR -114 251 4 322 378 64 23 chr15 31337022 31337194 -70043327 + L2 LINE L2 3085 3263 -9 2041 113 3 3 chr15 31337407 31337698 -70042823 + AluSx SINE Alu 1 291 -21 647 286 148 24 chr15 31339754 31340131 -70040390 + Charlie2b DNA MER1_type 2 425 -2437 429 290 21 14 chr15 31340144 31340289 -70040232 + Charlie2b DNA MER1_type 523 668 -2114 3054 223 72 92 chr15 31340395 31341806 -70038715 + Charlie2a DNA MER1_type 1469 2850 -12 790 262 22 56 chr15 31342507 31342774 -70037747 - MIR SINE MIR -1 261 4 22 0 0 0 chr15 31344735 31344757 -70035764 + AT_rich Low_complexity Low_complexity 1 22 0 279 306 90 99 chr15 31347165 31347743 -70032778 + L2 LINE L2 1763 2335 -979 310 274 24 12 chr15 31348038 31348122 -70032399 - L2 LINE L2 0 3313 3229 352 208 76 69 chr15 31348141 31348285 -70032236 + MIR SINE MIR 118 262 0 243 325 46 46 chr15 31348617 31348768 -70031753 - MIR SINE MIR -92 170 20 25 90 0 0 chr15 31349727 31349794 -70030727 + AT_rich Low_complexity Low_complexity 1 67 0 629 174 61 38 chr15 31350112 31350244 -70030277 - AluJo SINE Alu -177 135 1 192 161 0 0 chr15 31351562 31351593 -70028928 + L3b LINE CR1 1334 1364 -219 709 279 73 20 chr15 31351788 31352035 -70028486 + MIR SINE MIR 2 261 -1 219 192 356 0 chr15 31352742 31352815 -70027706 - MIR SINE MIR -1 261 163 664 289 104 20 chr15 31352901 31353258 -70027263 + L2 LINE L2 2474 2860 -454 182 167 0 24 chr15 31353874 31353916 -70026605 + (CAT)n Simple_repeat Simple_repeat 2 42 0 336 283 272 16 chr15 31353917 31354101 -70026420 - MIR SINE MIR -1 261 31 868 123 0 48 chr15 31354190 31354336 -70026185 - MER1B DNA MER1_type -1 338 200 876 61 0 53 chr15 31354337 31354449 -70026072 + LTR10C LTR ERV1 1 107 -484 2180 114 3 0 chr15 31354449 31354747 -70025774 - AluSq SINE Alu -14 299 1 876 61 0 53 chr15 31354747 31354766 -70025755 + LTR10C LTR ERV1 107 125 -466 772 162 86 52 chr15 31356573 31356783 -70023738 - MER46A DNA MER2_type -19 217 1 * 833 148 67 13 chr15 31356648 31356797 -70023724 + MER46A DNA MER2_type 3 159 -77 253 304 59 20 chr15 31356801 31356903 -70023618 - MIR SINE MIR -108 154 49 251 327 50 20 chr15 31358280 31358381 -70022140 - L2 LINE L2 -3 3310 3207 1900 108 36 14 chr15 31359674 31359974 -70020547 - AluSx SINE Alu 0 306 1 430 275 151 82 chr15 31360517 31360921 -70019600 - HAL1 LINE L1 -2075 432 1 340 344 32 13 chr15 31361006 31361163 -70019358 + MIR SINE MIR 37 196 -66 2060 126 0 10 chr15 31361174 31361475 -70019046 + AluSx SINE Alu 9 306 -6 223 27 27 27 chr15 31361997 31362034 -70018487 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 230 250 0 0 chr15 31363255 31363327 -70017194 + L1MC4 LINE L1 6635 6706 -1336 2037 64 0 8 chr15 31363984 31364235 -70016286 - AluY SINE Alu -24 287 39 183 403 73 21 chr15 31364621 31364909 -70015612 - L2 LINE L2 -626 2688 2386 1647 72 0 5 chr15 31365070 31365361 -70015160 - L1P LINE L1 -734 5427 5138 5212 94 12 6 chr15 31365361 31366079 -70014442 + L1PA11 LINE L1 5436 6172 -2 2341 94 0 10 chr15 31366247 31366546 -70013975 + AluSx SINE Alu 7 304 -8 513 0 0 0 chr15 31366546 31366603 -70013918 + (TA)n Simple_repeat Simple_repeat 2 58 0 1085 135 53 19 chr15 31367705 31367913 -70012608 + L1PA8 LINE L1 5955 6169 -3 227 339 79 0 chr15 31368331 31368448 -70012073 + MIR SINE MIR 24 149 -61 202 333 0 65 chr15 31368608 31368701 -70011820 + MIR SINE MIR 20 106 -102 3336 153 49 33 chr15 31368870 31369671 -70010850 + pTR5 LTR ERV1 733 2021 -417 319 214 0 36 chr15 31369676 31369760 -70010761 + LTR30 LTR ERV1 544 624 -98 2146 153 3 0 chr15 31369760 31370100 -70010421 + pTR5 LTR ERV1 52 392 -2046 349 228 30 20 chr15 31370241 31370342 -70010179 + MLT1I LTR MaLR 308 409 0 417 326 30 8 chr15 31374622 31374754 -70005767 - MER5A DNA MER1_type 0 189 55 192 283 76 83 chr15 31374649 31374794 -70005727 + MER5A DNA MER1_type 43 186 -3 * 235 327 59 0 chr15 31376401 31376502 -70004019 - MER91C DNA MER1_type 0 140 34 1708 197 34 21 chr15 31377391 31377776 -70002745 + MLT1B LTR MaLR 1 390 0 3122 187 29 0 chr15 31378411 31378957 -70001564 + MER68 LTR ERV1 1 562 0 22 94 0 0 chr15 31379028 31379092 -70001429 + AT_rich Low_complexity Low_complexity 1 64 0 621 294 60 12 chr15 31379096 31379344 -70001177 + L1M4 LINE L1 8 267 -6275 1690 250 67 13 chr15 31379381 31379973 -70000548 + L1M4 LINE L1 1657 2375 -4271 14616 125 25 13 chr15 31379974 31380804 -69999717 - Tigger1 DNA MER2_type 0 2418 1599 2256 114 0 3 chr15 31380804 31381101 -69999420 - AluSq SINE Alu -17 296 1 14616 125 25 13 chr15 31381101 31382569 -69997952 - Tigger1 DNA MER2_type -819 1599 93 320 274 82 67 chr15 31382578 31382713 -69997808 + L2 LINE L2 3177 3313 0 282 338 32 52 chr15 31382826 31382980 -69997541 - MER102b DNA MER1_type -39 302 152 2193 125 0 0 chr15 31383443 31383738 -69996783 - AluSx SINE Alu -13 299 5 296 125 0 18 chr15 31383764 31383820 -69996701 + (CA)n Simple_repeat Simple_repeat 2 56 0 792 276 135 52 chr15 31383906 31384387 -69996134 - LTR33 LTR ERVL 0 521 1 1457 186 0 53 chr15 31384570 31384871 -69995650 - AluJo SINE Alu -27 285 1 227 280 0 0 chr15 31385685 31385735 -69994786 + LTR30 LTR ERV1 3 52 -670 2653 135 9 32 chr15 31385735 31386173 -69994348 + LTR12 LTR ERV1 53 480 -234 24 0 0 0 chr15 31387004 31387028 -69993493 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr15 31388029 31388052 -69992469 + AT_rich Low_complexity Low_complexity 1 23 0 352 251 84 70 chr15 31388095 31388310 -69992211 + L1ME LINE L1 5569 5786 -335 562 335 31 0 chr15 31389757 31389918 -69990603 - MIR3 SINE MIR -11 197 32 261 0 0 0 chr15 31390476 31390505 -69990016 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 549 279 97 19 chr15 31390797 31391297 -69989224 + L1MDb LINE L1 1147 1591 -4951 32 26 0 0 chr15 31391300 31391339 -69989182 + AT_rich Low_complexity Low_complexity 1 39 0 239 333 0 15 chr15 31392098 31392164 -69988357 + MIR SINE MIR 23 87 -175 254 258 42 58 chr15 31392196 31392316 -69988205 - L2 LINE L2 -181 3091 2974 299 292 62 39 chr15 31393080 31393258 -69987263 + LTR33 LTR ERVL 275 456 -65 556 291 114 46 chr15 31396091 31396528 -69983993 - MLT1J LTR MaLR -44 467 1 201 147 0 0 chr15 31398404 31398438 -69982083 + (T)n Simple_repeat Simple_repeat 1 34 0 345 343 91 14 chr15 31399754 31399973 -69980548 - L3 LINE CR1 -156 1421 1186 29 28 0 0 chr15 31401251 31401287 -69979234 + AT_rich Low_complexity Low_complexity 1 36 0 278 295 8 23 chr15 31401523 31401652 -69978869 + (TA)n Simple_repeat Simple_repeat 1 127 0 206 118 0 0 chr15 31401694 31401728 -69978793 + (TA)n Simple_repeat Simple_repeat 1 34 0 1536 216 74 29 chr15 31402607 31403006 -69977515 - L1MB7 LINE L1 -78 6106 5686 1881 131 180 11 chr15 31403006 31403372 -69977149 - MSTA LTR MaLR 0 428 1 1536 216 74 29 chr15 31403372 31403393 -69977128 - L1MB7 LINE L1 -498 5686 5667 279 307 147 37 chr15 31404141 31404359 -69976162 + MLT1L LTR MaLR 374 615 0 254 254 0 0 chr15 31405084 31405143 -69975378 + L1ME LINE L1 195 253 -5952 507 282 102 76 chr15 31405863 31406786 -69973735 + L1ME LINE L1 860 1806 -4590 1053 218 137 73 chr15 31407009 31407530 -69972991 + L1ME LINE L1 2256 2819 -3396 2288 110 3 0 chr15 31407530 31407838 -69972683 - AluSx SINE Alu -1 311 3 1053 218 137 73 chr15 31407838 31407893 -69972628 + L1ME LINE L1 2819 2869 -3346 223 234 0 0 chr15 31408064 31408111 -69972410 + (CA)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr15 31408545 31408568 -69971953 + AT_rich Low_complexity Low_complexity 1 23 0 256 368 101 33 chr15 31408860 31409197 -69971324 - L2 LINE L2 -558 2756 2397 23 0 0 0 chr15 31411367 31411390 -69969131 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr15 31412244 31412276 -69968245 + AT_rich Low_complexity Low_complexity 1 32 0 1451 287 53 9 chr15 31412921 31413357 -69967164 + LTR16C LTR ERVL 28 482 -9 394 283 90 86 chr15 31413441 31413967 -69966554 + L1M4c LINE L1 911 1589 -4974 243 258 45 0 chr15 31414048 31414114 -69966407 + L1M4c LINE L1 1527 1595 -4789 307 295 116 90 chr15 31414630 31415017 -69965504 + L1ME LINE L1 103 499 -5706 1950 72 0 12 chr15 31415199 31415448 -69965073 + AluY SINE Alu 45 290 -21 332 285 146 62 chr15 31416075 31416384 -69964137 + L1ME LINE L1 1874 2208 -4188 627 291 97 31 chr15 31416450 31417162 -69963359 + L1ME LINE L1 2255 3013 -3202 6585 185 56 24 chr15 31417166 31418536 -69961985 - MER52A LTR ERV1 0 1755 374 34 55 0 0 chr15 31418647 31418702 -69961819 + AT_rich Low_complexity Low_complexity 1 55 0 697 81 30 0 chr15 31419157 31419256 -69961265 - LTR22B LTR ERVK -390 102 1 769 242 73 10 chr15 31419347 31419636 -69960885 + L1ME LINE L1 4387 4693 -1522 225 178 0 0 chr15 31419636 31419681 -69960840 + (TG)n Simple_repeat Simple_repeat 1 45 0 640 272 109 53 chr15 31419722 31420592 -69959929 + L1ME LINE L1 4688 5622 -611 * 1425 254 62 15 chr15 31420589 31421125 -69959396 + L1MC4 LINE L1 5276 5836 -1972 1164 241 48 38 chr15 31421254 31421903 -69958618 + L1MC4 LINE L1 6041 6618 -1190 1188 227 63 16 chr15 31421995 31422312 -69958209 + L1MC4 LINE L1 6614 6945 -1097 197 316 63 0 chr15 31423076 31423171 -69957350 + MIR SINE MIR 65 165 -97 240 273 15 0 chr15 31424620 31424686 -69955835 + (CA)n Simple_repeat Simple_repeat 2 68 0 27 0 0 0 chr15 31424910 31424937 -69955584 + AT_rich Low_complexity Low_complexity 1 27 0 380 269 162 78 chr15 31427370 31427641 -69952880 - MLT1I LTR MaLR -18 391 98 21 36 0 0 chr15 31428188 31428216 -69952305 + AT_rich Low_complexity Low_complexity 1 28 0 473 242 168 0 chr15 31428703 31428852 -69951669 + MIR SINE MIR 89 262 0 580 190 86 9 chr15 31429534 31429650 -69950871 + MER63 DNA MER1_type 1 751 -85 1487 236 92 36 chr15 31430469 31430956 -69949565 - LTR48B LTR ERV1 0 614 122 13152 219 37 28 chr15 31431018 31433922 -69946599 + L1MA5A LINE L1 889 3766 -3105 1675 169 6 29 chr15 31433922 31434235 -69946286 + AluJo SINE Alu 1 306 -6 13152 219 37 28 chr15 31434235 31434692 -69945829 + L1MA5A LINE L1 3766 4217 -2654 198 71 0 0 chr15 31434692 31434720 -69945801 + (CA)n Simple_repeat Simple_repeat 2 29 0 13152 219 37 28 chr15 31434720 31436529 -69943992 + L1MA5A LINE L1 4217 6128 -743 3962 147 15 41 chr15 31436530 31437258 -69943263 + MER50 LTR ERV1 1 709 -25 4582 139 32 8 chr15 31437258 31438050 -69942471 + L1MA5A LINE L1 6124 6934 -5 7221 40 7 26 chr15 31438919 31439968 -69940553 - L1PA7 LINE L1 -3 6151 5106 23 33 0 0 chr15 31440460 31440490 -69940031 + AT_rich Low_complexity Low_complexity 1 30 0 238 276 48 57 chr15 31440527 31440632 -69939889 + L2 LINE L2 3164 3267 -5 254 381 83 40 chr15 31442531 31442856 -69937665 + L2 LINE L2 2918 3256 -16 466 356 97 25 chr15 31443403 31443951 -69936570 + L2 LINE L2 2261 2847 -467 280 301 110 31 chr15 31444075 31444238 -69936283 - MIR SINE MIR -56 206 31 247 356 0 0 chr15 31444515 31444602 -69935919 + L2 LINE L2 3227 3313 0 1999 148 3 3 chr15 31444952 31445262 -69935259 - AluSx SINE Alu 0 312 3 4367 221 48 66 chr15 31445337 31446289 -69934232 + L1M4 LINE L1 2915 3883 -2263 1176 184 126 50 chr15 31446289 31446566 -69933955 + AluJo SINE Alu 1 298 -4 4367 221 48 66 chr15 31446566 31446606 -69933915 + L1M4 LINE L1 3883 3922 -2224 1163 211 160 13 chr15 31446606 31446924 -69933597 - MLT1A1 LTR MaLR 0 365 1 4367 221 48 66 chr15 31446924 31447630 -69932891 + L1M4 LINE L1 3922 4583 -1563 554 262 13 0 chr15 31447625 31447774 -69932747 + L1MA10 LINE L1 6183 6333 -1 * 254 356 59 7 chr15 31447884 31448019 -69932502 + MIR SINE MIR 88 229 -33 254 390 8 0 chr15 31448476 31448594 -69931927 + MIR3 SINE MIR 77 195 -13 22 0 0 0 chr15 31448674 31448696 -69931825 + AT_rich Low_complexity Low_complexity 1 22 0 222 298 0 0 chr15 31449435 31449492 -69931029 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 243 125 0 0 chr15 31449493 31449533 -69930988 + (GA)n Simple_repeat Simple_repeat 2 41 0 2115 153 75 23 chr15 31450982 31451360 -69929161 - L1MB3 LINE L1 -2 6181 5775 2504 114 22 0 chr15 31451360 31451727 -69928794 - THE1C LTR MaLR 0 375 1 2115 153 75 23 chr15 31451727 31451787 -69928734 - L1MB3 LINE L1 -408 5775 5720 394 295 71 55 chr15 31451933 31452187 -69928334 - MER102b DNA MER1_type -2 339 82 283 275 101 7 chr15 31452515 31452653 -69927868 - L1ME4a LINE L1 -79 6042 5892 192 179 0 0 chr15 31452980 31453019 -69927502 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 267 123 15 31 chr15 31453242 31453307 -69927214 + (TA)n Simple_repeat Simple_repeat 1 64 0 28 71 0 0 chr15 31453824 31453880 -69926641 + AT_rich Low_complexity Low_complexity 1 56 0 673 291 93 12 chr15 31454784 31455128 -69925393 + L1MEc LINE L1 1277 1648 -4748 655 162 77 49 chr15 31455208 31455436 -69925085 + MER106B DNA MER1_type 1 1059 0 866 273 105 20 chr15 31455436 31455997 -69924524 + L1M4 LINE L1 4238 4846 -1300 268 250 208 30 chr15 31455998 31456166 -69924355 - MLT1K LTR MaLR -295 293 96 37 0 0 0 chr15 31458507 31458544 -69921977 + AT_rich Low_complexity Low_complexity 1 37 0 432 310 95 0 chr15 31459090 31459248 -69921273 - MIR3 SINE MIR -12 196 24 336 333 76 20 chr15 31460128 31460326 -69920195 - MIR SINE MIR -13 249 41 1628 173 52 9 chr15 31460638 31460880 -69919641 + MER44D DNA MER2_type 1 231 -2260 1294 194 107 28 chr15 31460880 31461199 -69919322 - MER2 DNA MER2_type 0 344 1 1628 173 52 9 chr15 31461199 31461280 -69919241 + MER44D DNA MER2_type 231 608 -1 2087 150 28 3 chr15 31461321 31461675 -69918846 - MLT1A1 LTR MaLR -2 363 1 900 209 19 14 chr15 31461780 31461990 -69918531 - L1MD2 LINE L1 -2 6357 6147 5884 165 18 6 chr15 31462495 31464248 -69916273 - L1MA9 LINE L1 -2 6310 4536 5296 164 32 25 chr15 31464244 31465152 -69915369 + L1 LINE L1 3392 4311 -1835 * 2259 81 10 0 chr15 31465152 31465448 -69915073 + AluSp SINE Alu 1 299 -14 5296 164 32 25 chr15 31465448 31465657 -69914864 + L1 LINE L1 4311 4517 -1629 913 280 8 4 chr15 31465894 31466130 -69914391 + MIR SINE MIR 8 244 -18 322 39 39 0 chr15 31466361 31466413 -69914108 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 9935 24 8 0 chr15 31466413 31468358 -69912163 - L1PA2 LINE L1 -13 6142 4189 594 169 44 132 chr15 31468362 31468679 -69911842 + MLT2D LTR ERVL 156 414 0 426 290 142 0 chr15 31468711 31468873 -69911648 - MIR SINE MIR -75 187 3 269 361 45 7 chr15 31468921 31469076 -69911445 - L2 LINE L2 -1449 1865 1705 278 31 0 0 chr15 31469904 31469936 -69910585 + (T)n Simple_repeat Simple_repeat 1 32 0 4470 35 0 26 chr15 31470123 31470732 -69909789 + L1PA2 LINE L1 5563 6155 0 746 203 14 0 chr15 31470733 31470881 -69909640 - MLT2B1 LTR ERVL -358 162 13 206 288 45 0 chr15 31471459 31471525 -69908996 + L2 LINE L2 3204 3272 0 205 269 0 0 chr15 31471511 31471563 -69908958 + (TGAA)n Simple_repeat Simple_repeat 4 55 0 * 288 278 127 8 chr15 31471763 31471889 -69908632 + MIR SINE MIR 121 261 -1 217 342 114 25 chr15 31472602 31472839 -69907682 - L2 LINE L2 -19 3253 2996 181 339 159 22 chr15 31473558 31473785 -69906736 - L2 LINE L2 -19 3253 2996 289 116 0 0 chr15 31474225 31474268 -69906253 + tRNA-Gln-CAG tRNA tRNA 1 43 -32 567 306 49 6 chr15 31474631 31474814 -69905707 - MIR SINE MIR -15 247 57 1972 124 0 7 chr15 31475143 31475450 -69905071 - L1PA8 LINE L1 0 6172 5868 324 258 212 12 chr15 31476140 31476441 -69904080 + LTR50 LTR ERVL 38 473 -322 291 225 28 0 chr15 31476465 31476536 -69903985 + LTR33A LTR ERVL 451 523 0 239 233 30 15 chr15 31476670 31476838 -69903683 + (TA)n Simple_repeat Simple_repeat 1 170 0 22 35 0 0 chr15 31477582 31477611 -69902910 + AT_rich Low_complexity Low_complexity 1 29 0 624 182 0 9 chr15 31478428 31478538 -69901983 + Tigger2a DNA MER2_type 1 109 -325 195 355 75 0 chr15 31478615 31478708 -69901813 - L2 LINE L2 -20 3252 3153 937 178 59 5 chr15 31478956 31479175 -69901346 + L1MA4 LINE L1 6064 6294 -6 224 337 0 0 chr15 31479228 31479320 -69901201 + A-rich Low_complexity Low_complexity 1 92 0 298 212 153 59 chr15 31480384 31480502 -69900019 - MIR SINE MIR -64 198 70 428 191 177 32 chr15 31481095 31481315 -69899206 - MER113 DNA MER1_type? -258 263 12 2361 190 109 16 chr15 31481345 31481904 -69898617 + MER90 LTR ERV1 4 614 0 2264 112 0 0 chr15 31481991 31482287 -69898234 + AluSg SINE Alu 3 298 -12 270 236 45 56 chr15 31482530 31482619 -69897902 - MIR SINE MIR -152 110 23 274 300 80 21 chr15 31484261 31484393 -69896128 - MIR SINE MIR -63 145 18 2151 159 6 6 chr15 31486220 31486584 -69893937 + MER47A DNA MER2_type 3 366 0 743 195 65 50 chr15 31487494 31487694 -69892827 - MER3 DNA MER1_type 0 209 7 1894 92 0 46 chr15 31487862 31488144 -69892377 - AluSx SINE Alu -1 311 43 224 214 102 51 chr15 31489910 31490008 -69890513 + L2 LINE L2 3202 3304 -9 200 327 102 51 chr15 31490075 31490390 -69890131 + L2 LINE L2 2935 3265 -48 380 312 0 9 chr15 31491145 31491254 -69889267 + MIR SINE MIR 15 122 -140 315 272 88 80 chr15 31492340 31492590 -69887931 - L1ME4a LINE L1 -234 5887 5636 31 44 0 0 chr15 31492610 31492655 -69887866 + AT_rich Low_complexity Low_complexity 1 45 0 499 269 48 0 chr15 31492844 31493052 -69887469 - L1MC4a LINE L1 -1897 5911 5694 258 81 0 0 chr15 31493059 31493096 -69887425 + (TG)n Simple_repeat Simple_repeat 2 38 0 200 176 0 0 chr15 31493169 31493203 -69887318 + (TG)n Simple_repeat Simple_repeat 1 34 0 26 30 0 0 chr15 31493248 31493281 -69887240 + AT_rich Low_complexity Low_complexity 1 33 0 2572 177 19 46 chr15 31493606 31493846 -69886675 - MLT1C LTR MaLR -5 457 244 667 405 35 53 chr15 31493846 31494280 -69886241 - MSTC LTR MaLR 0 428 3 2572 177 19 46 chr15 31494280 31494518 -69886003 - MLT1C LTR MaLR -218 244 1 356 228 223 27 chr15 31494858 31495042 -69885479 - L1M4 LINE L1 -1717 4429 4210 25 51 0 0 chr15 31495042 31495081 -69885440 + AT_rich Low_complexity Low_complexity 1 39 0 299 368 7 0 chr15 31495159 31495295 -69885226 - HAL1 LINE L1 -793 1714 1578 337 284 47 24 chr15 31495362 31495489 -69885032 - HAL1 LINE L1 -1051 1456 1327 8296 148 13 18 chr15 31495646 31496129 -69884392 - L1PA11 LINE L1 -6 6168 5684 1983 116 40 10 chr15 31496129 31496430 -69884091 + AluY SINE Alu 1 310 -1 8296 148 13 18 chr15 31496430 31498259 -69882262 - L1PA11 LINE L1 -490 5684 3882 205 193 53 0 chr15 31498267 31498324 -69882197 + (TA)n Simple_repeat Simple_repeat 2 61 0 2310 259 88 13 chr15 31498333 31499686 -69880835 - L1ME2 LINE L1 -9 6155 4699 233 179 0 18 chr15 31499807 31499863 -69880658 + GA-rich Low_complexity Low_complexity 4 58 0 5853 169 34 13 chr15 31500324 31501837 -69878684 + L1MC1 LINE L1 4787 6333 0 2015 132 0 3 chr15 31503254 31503550 -69876971 - AluSx SINE Alu -17 295 1 13347 205 32 14 chr15 31503850 31506404 -69874117 + L1M4c LINE L1 21 2528 -3854 1217 228 118 0 chr15 31506404 31506667 -69873854 - AluJo SINE Alu -8 294 1 13347 205 32 14 chr15 31506667 31509471 -69871050 + L1M4c LINE L1 2528 5476 -906 239 282 26 26 chr15 31509671 31509749 -69870772 + MER5A DNA MER1_type 80 157 -32 819 173 0 0 chr15 31511336 31511469 -69869052 - FLAM_A SINE Alu 0 133 1 1720 159 32 15 chr15 31511484 31511823 -69868698 - L1MB3 LINE L1 -8 6175 5831 1485 110 17 0 chr15 31511824 31512060 -69868461 + L1P LINE L1 4837 5076 -1070 197 394 0 39 chr15 31513684 31513788 -69866733 + L2 LINE L2 2991 3090 -182 431 226 61 0 chr15 31513956 31514071 -69866450 + MER69A DNA AcHobo 56 177 0 779 208 6 50 chr15 31514434 31514593 -69865928 - FRAM SINE Alu -22 154 3 1745 163 40 9 chr15 31514865 31515215 -69865306 + L1PA16 LINE L1 5790 6150 -16 22 70 0 0 chr15 31515899 31515942 -69864579 + AT_rich Low_complexity Low_complexity 1 43 0 661 205 18 18 chr15 31516026 31516305 -69864216 + GA-rich Low_complexity Low_complexity 1 279 0 210 264 76 36 chr15 31517675 31517785 -69862736 - MER5A DNA MER1_type -39 150 27 255 310 0 14 chr15 31517955 31518026 -69862495 - L2 LINE L2 -2 3270 3201 1203 252 140 29 chr15 31518252 31518866 -69861655 - L1ME3A LINE L1 0 6170 5459 831 286 85 28 chr15 31518873 31518990 -69861531 - L1ME3A LINE L1 -1082 5064 4955 2119 80 11 3 chr15 31518990 31519307 -69861214 - AluY SINE Alu 0 319 1 831 286 85 28 chr15 31519307 31519838 -69860683 - L1ME3A LINE L1 -1191 4955 4378 1015 234 104 27 chr15 31519845 31520221 -69860300 - L1ME1 LINE L1 -3 6163 5759 3432 241 70 29 chr15 31520461 31521190 -69859331 - L1ME1 LINE L1 -487 5679 4981 2150 144 30 25 chr15 31521190 31521552 -69858969 - THE1B LTR MaLR 0 364 1 3432 241 70 29 chr15 31521552 31521792 -69858729 - L1ME1 LINE L1 -1185 4981 4752 231 36 0 0 chr15 31521792 31521820 -69858701 + (CTATT)n Simple_repeat Simple_repeat 4 31 0 3432 241 70 29 chr15 31521820 31522320 -69858201 - L1ME1 LINE L1 -1414 4752 4152 650 291 81 19 chr15 31522309 31522739 -69857782 - L1ME3A LINE L1 -1737 4409 3953 * 774 271 63 25 chr15 31522764 31523195 -69857326 + L1ME4a LINE L1 3342 3788 -2358 642 216 58 124 chr15 31523197 31523438 -69857083 + LTR40b LTR ERVL 1 225 -237 280 287 43 9 chr15 31523608 31523723 -69856798 + ERVL LTR ERVL 3966 4084 -1680 484 276 74 20 chr15 31523838 31524041 -69856480 + LTR16A LTR ERVL 196 409 -41 313 351 110 9 chr15 31524500 31524828 -69855693 + ERVL LTR ERVL 4832 5192 -572 24 0 0 0 chr15 31525942 31525966 -69854555 + AT_rich Low_complexity Low_complexity 1 24 0 1225 266 28 8 chr15 31526019 31526413 -69854108 - L1MB7 LINE L1 -1 6183 5782 346 246 54 54 chr15 31526655 31526785 -69853736 + L1ME4a LINE L1 4904 5033 -1113 321 292 179 40 chr15 31527152 31527477 -69853044 + L1ME4a LINE L1 5484 5853 -268 264 70 0 0 chr15 31527688 31527731 -69852790 + L1ME4a LINE L1 6063 6105 -16 243 308 82 34 chr15 31528091 31528299 -69852222 + L2 LINE L2 1706 1923 -1391 252 296 28 37 chr15 31528539 31528647 -69851874 + MIR SINE MIR 156 262 0 217 357 82 10 chr15 31528805 31528903 -69851618 - L2 LINE L2 -19 3253 3149 202 294 239 0 chr15 31529767 31529859 -69850662 + L2 LINE L2 3159 3272 0 27 0 0 0 chr15 31530298 31530325 -69850196 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr15 31531353 31531381 -69849140 + AT_rich Low_complexity Low_complexity 1 28 0 493 274 121 68 chr15 31532257 31532564 -69847957 + L2 LINE L2 2944 3266 -47 201 39 0 0 chr15 31533924 31533950 -69846571 + (CA)n Simple_repeat Simple_repeat 1 26 0 192 403 126 0 chr15 31534814 31534933 -69845588 + L2 LINE L2 2610 2743 -571 26 0 0 0 chr15 31535930 31535956 -69844565 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr15 31536115 31536143 -69844378 + AT_rich Low_complexity Low_complexity 1 28 0 791 116 8 0 chr15 31536143 31536264 -69844257 - L1MA1 LINE L1 -6 6296 6175 23 0 0 0 chr15 31536317 31536340 -69844181 + AT_rich Low_complexity Low_complexity 1 23 0 311 249 110 64 chr15 31537784 31537957 -69842564 - MLT1K LTR MaLR -8 580 400 394 254 80 85 chr15 31538038 31538262 -69842259 - MLT1K LTR MaLR -356 232 10 1885 256 49 25 chr15 31538414 31538968 -69841553 + MLT1F1 LTR MaLR 1 567 0 267 273 82 0 chr15 31538995 31539105 -69841416 + MER103 DNA DNA 2 120 -46 212 143 0 0 chr15 31539105 31539140 -69841381 + (GA)n Simple_repeat Simple_repeat 2 36 0 817 189 6 17 chr15 31539347 31539522 -69840999 + MER96B DNA MER1_type? 1 173 -244 798 237 45 0 chr15 31541022 31541199 -69839322 - MER58B DNA MER1_type 0 341 157 263 341 163 31 chr15 31541611 31541936 -69838585 + L3 LINE CR1 1065 1432 -145 208 182 0 0 chr15 31542376 31542409 -69838112 + L3 LINE CR1 1535 1567 -10 965 137 101 12 chr15 31542678 31542846 -69837675 + MER2 DNA MER2_type 14 196 -149 1487 194 19 50 chr15 31542873 31543193 -69837328 - AluJo SINE Alu -2 310 1 183 329 114 0 chr15 31544034 31544113 -69836408 + L2 LINE L2 3207 3294 -19 219 214 22 56 chr15 31544233 31544322 -69836199 + T-rich Low_complexity Low_complexity 3 88 0 1923 259 63 61 chr15 31544608 31545274 -69835247 - L1ME3A LINE L1 -12 6092 5422 2455 75 0 0 chr15 31545274 31545569 -69834952 - AluY SINE Alu -16 295 1 1923 259 63 61 chr15 31545569 31545793 -69834728 - L1ME3A LINE L1 -682 5422 5200 310 277 29 0 chr15 31545783 31545920 -69834601 - L1ME3A LINE L1 -4130 2131 1991 * 664 270 63 80 chr15 31546093 31547005 -69833516 - L1ME LINE L1 -4615 1646 719 22 0 0 0 chr15 31547829 31547851 -69832670 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr15 31547954 31547975 -69832546 + AT_rich Low_complexity Low_complexity 1 21 0 2544 97 40 0 chr15 31548819 31549169 -69831352 - THE1B LTR MaLR 0 364 1 208 139 0 0 chr15 31549423 31549459 -69831062 + (T)n Simple_repeat Simple_repeat 1 36 0 23 33 0 0 chr15 31549917 31549947 -69830574 + AT_rich Low_complexity Low_complexity 1 30 0 440 125 0 68 chr15 31550153 31550241 -69830280 + L1PA14 LINE L1 6078 6159 -2 21 36 0 0 chr15 31550461 31550489 -69830032 + AT_rich Low_complexity Low_complexity 1 28 0 42849 34 21 1 chr15 31550489 31556562 -69823959 + L1PA3 LINE L1 4 6155 0 906 280 8 4 chr15 31556788 31557024 -69823497 - MIR SINE MIR -18 244 8 5253 162 32 25 chr15 31557261 31557470 -69823051 - L1 LINE L1 -1629 4517 4311 2295 81 10 0 chr15 31557470 31557766 -69822755 - AluSp SINE Alu -14 299 1 5253 162 32 25 chr15 31557766 31558674 -69821847 - L1 LINE L1 -1835 4311 3392 * 5837 164 18 6 chr15 31558672 31560423 -69820098 + L1MA9 LINE L1 4538 6310 -2 937 200 19 14 chr15 31560928 31561138 -69819383 + L1MD2 LINE L1 6147 6357 -2 2106 150 28 3 chr15 31561243 31561597 -69818924 + MLT1A1 LTR MaLR 1 363 -2 1617 173 52 9 chr15 31561638 31561719 -69818802 - MER44D DNA MER2_type -1883 608 532 1284 194 107 28 chr15 31561719 31562038 -69818483 + MER2 DNA MER2_type 1 344 0 1617 173 52 9 chr15 31562038 31562280 -69818241 - MER44D DNA MER2_type -1959 532 1 334 333 76 20 chr15 31562592 31562790 -69817731 + MIR SINE MIR 41 249 -13 439 310 95 0 chr15 31563670 31563828 -69816693 + MIR3 SINE MIR 24 196 -12 2176 139 64 79 chr15 31566230 31567069 -69813452 - MER21A LTR ERV1 -29 902 14 2277 125 19 27 chr15 31569361 31569728 -69810793 - THE1B LTR MaLR 0 364 1 1518 222 43 2 chr15 31569854 31570263 -69810258 + MLT2B1 LTR ERVL 2 480 -40 225 108 0 0 chr15 31570264 31570301 -69810220 + (TG)n Simple_repeat Simple_repeat 2 38 0 249 250 31 0 chr15 31570308 31570372 -69810149 + (CATA)n Simple_repeat Simple_repeat 1 66 0 304 97 43 0 chr15 31570373 31570425 -69810096 + MLT2B1 LTR ERVL 391 520 0 2098 55 7 41 chr15 31570966 31571296 -69809225 - AluY SINE Alu 0 320 1 255 303 21 56 chr15 31571898 31572040 -69808481 + L3b LINE CR1 1311 1447 -136 46 78 0 0 chr15 31572576 31572678 -69807843 + AT_rich Low_complexity Low_complexity 1 102 0 994 142 0 0 chr15 31575528 31575676 -69804845 + AluSq/x SINE Alu 2 149 -163 5675 66 5 0 chr15 31575676 31576828 -69803693 - L1PA7 LINE L1 -178 5976 4821 1623 203 136 50 chr15 31576896 31577478 -69803043 + LTR27 LTR ERV1 3 634 -2 432 227 73 14 chr15 31579694 31579919 -69800602 + MER20B DNA MER1_type 236 499 -284 804 241 113 14 chr15 31580083 31580374 -69800147 + MER5C DNA MER1_type 5 324 0 5577 165 33 7 chr15 31580612 31582359 -69798162 + L1PA16 LINE L1 4377 6166 0 236 292 17 33 chr15 31582548 31582668 -69797853 + L1M4 LINE L1 2647 2764 -3382 1089 186 22 35 chr15 31582671 31582897 -69797624 + AluJo SINE Alu 1 223 -89 202 275 29 14 chr15 31582914 31582983 -69797538 + MIR SINE MIR 123 192 -70 422 108 14 27 chr15 31582983 31583057 -69797464 + AluJo SINE Alu 225 297 -15 623 296 62 22 chr15 31583262 31583620 -69796901 + L1M4 LINE L1 3026 3397 -2749 234 258 34 22 chr15 31584039 31584128 -69796393 + (TATG)n Simple_repeat Simple_repeat 3 92 0 443 320 86 6 chr15 31584831 31585006 -69795515 + MIR SINE MIR 69 255 -7 548 344 122 22 chr15 31585529 31586101 -69794420 - L2 LINE L2 0 3313 2689 1251 300 36 16 chr15 31586415 31586911 -69793610 + L1MC3 LINE L1 1 506 -5539 314 303 16 25 chr15 31586928 31587050 -69793471 + MIR SINE MIR 101 221 -41 2448 224 34 40 chr15 31587530 31588653 -69791868 + L1MC3 LINE L1 551 1680 -4851 10935 201 25 55 chr15 31588656 31590306 -69790215 + L1MC3 LINE L1 4726 6424 -1779 266 229 0 0 chr15 31590306 31590354 -69790167 + MER66B LTR ERV1 298 345 -141 10935 201 25 55 chr15 31590354 31590516 -69790005 + L1MC3 LINE L1 6424 6589 -1614 1930 171 3 0 chr15 31590516 31590825 -69789696 + AluJb SINE Alu 1 310 -2 10935 201 25 55 chr15 31590825 31591697 -69788824 + L1MC3 LINE L1 6589 7486 -717 2487 119 8 3 chr15 31591697 31592059 -69788462 - THE1B LTR MaLR 0 364 1 1983 144 3 6 chr15 31592067 31592380 -69788141 + AluJb SINE Alu 1 312 0 10935 201 25 55 chr15 31592380 31593220 -69787301 + L1MC3 LINE L1 7493 8203 0 329 258 97 16 chr15 31593313 31593437 -69787084 + LTR67 LTR ERVL 398 531 -26 2130 131 3 0 chr15 31594026 31594324 -69786197 + AluSg SINE Alu 1 299 -11 254 326 43 0 chr15 31595219 31595311 -69785210 + LTR16C LTR ERVL 251 346 -145 610 339 68 49 chr15 31595853 31597076 -69783445 + ERVL LTR ERVL 2527 3776 -1878 397 227 64 118 chr15 31597378 31597581 -69782940 + ERVL LTR ERVL 4134 4325 -1329 450 0 0 0 chr15 31597632 31597682 -69782839 + (TA)n Simple_repeat Simple_repeat 2 51 0 6091 100 46 9 chr15 31597682 31598651 -69781870 - L1PA10 LINE L1 -11 6157 5177 6101 128 4 2 chr15 31598651 31599606 -69780915 + L1PA10 LINE L1 4194 5150 -996 1166 341 7 2 chr15 31599623 31600036 -69780485 + ERVL LTR ERVL 4459 4873 -891 4975 129 9 14 chr15 31600104 31600889 -69779632 + L1PA15 LINE L1 5382 6162 -3 418 272 169 44 chr15 31601352 31601751 -69778770 - MLT1H LTR MaLR -10 539 17 23 54 0 0 chr15 31602276 31602313 -69778208 + AT_rich Low_complexity Low_complexity 1 37 0 1942 131 21 0 chr15 31602876 31603167 -69777354 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr15 31603297 31603319 -69777202 + AT_rich Low_complexity Low_complexity 1 22 0 405 283 84 50 chr15 31604985 31605053 -69775468 + L1ME4a LINE L1 5518 5582 -539 1861 176 39 0 chr15 31605053 31605388 -69775133 + MER7A DNA MER2_type 1 346 0 405 283 84 50 chr15 31605388 31605578 -69774943 + L1ME4a LINE L1 5582 5764 -357 2317 55 3 22 chr15 31605578 31605889 -69774632 + AluY SINE Alu 1 305 -6 405 283 84 50 chr15 31605889 31605908 -69774613 + L1ME4a LINE L1 5764 5781 -340 414 0 0 0 chr15 31605908 31605954 -69774567 + (TA)n Simple_repeat Simple_repeat 1 46 0 405 283 84 50 chr15 31605954 31606151 -69774370 + L1ME4a LINE L1 5781 6010 -111 240 291 31 47 chr15 31606624 31606751 -69773770 - MLT1L LTR MaLR -404 211 87 2312 117 16 19 chr15 31607198 31607574 -69772947 - THE1C LTR MaLR 0 375 1 351 292 110 26 chr15 31607668 31607822 -69772699 - MIR SINE MIR -73 189 23 192 188 0 83 chr15 31608331 31608379 -69772142 - MIR3 SINE MIR -3 205 162 245 106 0 21 chr15 31610115 31610162 -69770359 + (TC)n Simple_repeat Simple_repeat 1 46 0 2480 30 0 0 chr15 31612013 31612315 -69768206 - L1PA5 LINE L1 -3514 2632 2331 22433 37 0 2 chr15 31612315 31615839 -69764682 + L1PA5 LINE L1 2625 6150 -4 1063 222 69 121 chr15 31616884 31617465 -69763056 - L1ME3A LINE L1 0 6170 5620 1923 124 0 0 chr15 31618125 31618398 -69762123 - AluSc SINE Alu 0 309 37 382 173 0 25 chr15 31618470 31618551 -69761970 - MER53 DNA DNA -1 188 110 733 292 58 19 chr15 31619487 31619850 -69760671 + L1ME4a LINE L1 5520 5896 -225 413 259 18 22 chr15 31620393 31620575 -69759946 - L2 LINE L2 -1 3271 3017 23 0 0 0 chr15 31621038 31621061 -69759460 + AT_rich Low_complexity Low_complexity 1 23 0 201 219 31 0 chr15 31621232 31621296 -69759225 + (TA)n Simple_repeat Simple_repeat 2 67 0 223 340 151 0 chr15 31622384 31622490 -69758031 - L2 LINE L2 0 3272 3151 1650 165 38 14 chr15 31624664 31624955 -69755566 - AluJo SINE Alu -14 298 1 316 244 24 16 chr15 31625007 31625134 -69755387 + L1ME4a LINE L1 5741 5868 -253 291 238 106 13 chr15 31625183 31625334 -69755187 + L1ME4a LINE L1 5956 6120 -1 24 32 0 0 chr15 31629781 31629812 -69750709 + AT_rich Low_complexity Low_complexity 1 31 0 219 220 20 0 chr15 31629948 31629998 -69750523 - L2 LINE L2 0 3313 3263 2800 145 16 42 chr15 31629998 31630054 -69750467 - MER6A DNA MER2_type -382 483 427 2514 149 7 7 chr15 31630054 31630504 -69750017 - L1MA4 LINE L1 -3 6297 5848 2800 145 16 42 chr15 31630504 31630943 -69749578 - MER6A DNA MER2_type -438 427 1 7669 170 44 5 chr15 31631044 31632974 -69747547 - L1PA15-16 LINE L1 -3171 3678 1663 238 105 58 35 chr15 31632990 31633076 -69747445 + (TA)n Simple_repeat Simple_repeat 2 89 0 530 55 98 0 chr15 31633108 31633271 -69747250 + (CATAT)n Simple_repeat Simple_repeat 2 180 0 207 115 0 66 chr15 31633285 31633346 -69747175 + (TA)n Simple_repeat Simple_repeat 1 57 0 4779 217 25 4 chr15 31633346 31634260 -69746261 - L1PA15-16 LINE L1 -5203 1646 714 3103 231 28 2 chr15 31634272 31634879 -69745642 - L1PA15-16 LINE L1 -5586 1263 641 1930 202 18 30 chr15 31634875 31635366 -69745155 - L1P LINE L1 -833 5313 4829 * 1750 178 10 20 chr15 31635872 31636176 -69744345 - AluJb SINE Alu -11 301 1 2018 136 3 7 chr15 31636605 31636913 -69743608 - AluY SINE Alu -4 307 1 280 256 107 18 chr15 31639577 31639745 -69740776 + L1M4 LINE L1 4142 4324 -1822 433 203 68 79 chr15 31639912 31640089 -69740432 - MER104 DNA MER2_type -3 177 3 597 310 82 3 chr15 31640100 31640403 -69740118 + HAL1b LINE L1 295 621 -727 31 76 0 0 chr15 31640517 31640583 -69739938 + AT_rich Low_complexity Low_complexity 1 66 0 34 24 0 0 chr15 31640790 31640831 -69739690 + AT_rich Low_complexity Low_complexity 1 41 0 1896 45 4 8 chr15 31640981 31641225 -69739296 - LTR7 LTR ERV1 -207 243 1 2605 68 45 13 chr15 31641225 31641605 -69738916 - HERVH LTR ERV1 0 7713 7322 1388 124 18 5 chr15 31641603 31641820 -69738701 - HERVH LTR ERV1 -1894 5819 5600 * 4330 148 0 1 chr15 31641821 31642483 -69738038 - HERVH LTR ERV1 -2564 5149 4489 3421 103 2 6 chr15 31642486 31642990 -69737531 - HERVH LTR ERV1 -3720 3993 3492 924 135 20 0 chr15 31642980 31643128 -69737393 - HERVH LTR ERV1 -4423 3290 3140 * 16305 100 16 33 chr15 31643107 31646029 -69734492 - HERVH LTR ERV1 -4718 2995 373 520 323 83 0 chr15 31646671 31646888 -69733633 + MIR SINE MIR 4 238 -24 256 200 100 0 chr15 31647271 31647331 -69733190 + MLT1L LTR MaLR 12 77 -538 379 323 58 32 chr15 31647497 31647790 -69732731 + MLT1L LTR MaLR 279 610 -5 209 242 74 0 chr15 31647800 31647895 -69732626 + A-rich Low_complexity Low_complexity 2 103 0 1170 251 27 7 chr15 31648217 31648516 -69732005 - LTR40b LTR ERVL -157 305 1 613 239 73 27 chr15 31648862 31649121 -69731400 + L1ME LINE L1 5500 5770 -351 26 82 0 0 chr15 31649137 31649198 -69731323 + AT_rich Low_complexity Low_complexity 1 61 0 25 31 0 0 chr15 31652685 31652717 -69727804 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr15 31652738 31652759 -69727762 + AT_rich Low_complexity Low_complexity 1 21 0 228 377 102 34 chr15 31654276 31654716 -69725805 - L3b LINE CR1 -6 1577 1108 273 329 13 0 chr15 31654733 31654812 -69725709 + L2 LINE L2 3193 3272 0 422 211 10 0 chr15 31655965 31656069 -69724452 + GA-rich Low_complexity Low_complexity 1 105 0 223 283 0 0 chr15 31656315 31656375 -69724146 + (TA)n Simple_repeat Simple_repeat 2 61 0 279 79 0 0 chr15 31657365 31657403 -69723118 + (TG)n Simple_repeat Simple_repeat 2 39 0 22 0 0 0 chr15 31658573 31658595 -69721926 + AT_rich Low_complexity Low_complexity 1 22 0 1822 129 32 63 chr15 31659152 31659500 -69721021 - MER1B DNA MER1_type 0 337 1 318 278 30 96 chr15 31659979 31660209 -69720312 - L1MC4 LINE L1 -2 8040 7826 2890 241 68 58 chr15 31660252 31661297 -69719224 - L1ME2 LINE L1 -13 6085 5052 2055 113 3 56 chr15 31661297 31661617 -69718904 - AluSx SINE Alu -9 303 1 2890 241 68 58 chr15 31661617 31661889 -69718632 - L1ME2 LINE L1 -1046 5052 4784 579 29 0 0 chr15 31661889 31661958 -69718563 + (TA)n Simple_repeat Simple_repeat 2 70 0 2890 241 68 58 chr15 31661958 31662731 -69717790 - L1ME2 LINE L1 -1314 4784 3982 874 279 28 0 chr15 31662719 31663006 -69717515 - L1ME2 LINE L1 -3474 2606 2312 * 545 237 38 48 chr15 31663158 31663362 -69717159 + MLT1E1 LTR MaLR 51 304 -350 33 25 0 0 chr15 31663544 31663584 -69716937 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr15 31663655 31663684 -69716837 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 31663719 31663741 -69716780 + AT_rich Low_complexity Low_complexity 1 22 0 1671 264 56 47 chr15 31663762 31664570 -69715951 - L1ME2 LINE L1 -5207 863 49 311 243 0 0 chr15 31664578 31664648 -69715873 + LTR33 LTR ERVL 390 459 -62 541 338 49 52 chr15 31664713 31664916 -69715605 + L2 LINE L2 2936 3139 -174 1320 196 3 103 chr15 31664916 31665247 -69715274 - AluSx SINE Alu -3 299 2 541 338 49 52 chr15 31665247 31665410 -69715111 + L2 LINE L2 3139 3301 -12 981 304 19 4 chr15 31666774 31667031 -69713490 - MIR SINE MIR 0 262 2 229 188 0 21 chr15 31667368 31667416 -69713105 + MLT1L LTR MaLR 33 79 -536 26 0 0 0 chr15 31670242 31670268 -69710253 + AT_rich Low_complexity Low_complexity 1 26 0 2011 122 0 4 chr15 31670274 31670586 -69709935 + AluSx SINE Alu 7 317 0 24 0 0 0 chr15 31670629 31670653 -69709868 + AT_rich Low_complexity Low_complexity 1 24 0 288 253 51 0 chr15 31670941 31671020 -69709501 + MIR SINE MIR 72 154 -108 229 299 191 34 chr15 31671112 31671259 -69709262 + MIR SINE MIR 93 262 0 279 54 18 36 chr15 31671948 31672004 -69708517 + (CA)n Simple_repeat Simple_repeat 2 56 0 722 251 106 71 chr15 31672032 31672466 -69708055 + L1MC5 LINE L1 6661 7109 -852 1478 225 78 70 chr15 31672676 31673486 -69707035 - L1MEc LINE L1 -1379 4836 4021 3289 269 69 57 chr15 31673538 31674864 -69705657 - L1MEc LINE L1 -2465 3750 2441 2311 116 0 0 chr15 31674864 31675174 -69705347 + AluSx SINE Alu 1 310 -2 3289 269 69 57 chr15 31675174 31675995 -69704526 - L1MEc LINE L1 -3774 2441 1631 2736 103 0 26 chr15 31675995 31676424 -69704097 - L1MA3 LINE L1 0 6305 5888 3289 269 69 57 chr15 31676424 31678014 -69702507 - L1MEc LINE L1 -4584 1631 22 270 305 153 0 chr15 31678090 31678208 -69702313 - L2 LINE L2 -668 2646 2511 425 294 136 18 chr15 31678634 31678855 -69701666 - MIR SINE MIR -9 253 7 531 322 96 57 chr15 31679049 31679506 -69701015 + MLT1L LTR MaLR 4 478 -137 902 252 18 14 chr15 31679646 31679868 -69700653 - MER58A DNA MER1_type 0 224 2 207 243 14 40 chr15 31680192 31680266 -69700255 + (TAAA)n Simple_repeat Simple_repeat 1 72 0 2126 215 34 22 chr15 31680368 31680862 -69699659 + MLT1D LTR MaLR 6 505 0 21 0 0 0 chr15 31681958 31681979 -69698542 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr15 31682105 31682128 -69698393 + AT_rich Low_complexity Low_complexity 1 23 0 1571 137 0 9 chr15 31682690 31682917 -69697604 - AluJb SINE Alu -24 288 64 738 237 191 127 chr15 31683466 31684487 -69696034 - MER52A LTR ERV1 0 1755 670 2239 78 20 0 chr15 31685052 31685346 -69695175 - AluSg SINE Alu -10 300 1 288 0 0 0 chr15 31685567 31685599 -69694922 + (TG)n Simple_repeat Simple_repeat 2 33 0 191 244 90 39 chr15 31687339 31687417 -69693104 + L2 LINE L2 3150 3231 -82 3345 139 15 26 chr15 31688096 31688629 -69691892 + MER1A DNA MER1_type 1 527 0 1705 181 83 17 chr15 31690044 31690404 -69690117 - MLT1B LTR MaLR -6 384 1 207 282 77 94 chr15 31690492 31690609 -69689912 - L2 LINE L2 -3 3269 3155 4417 151 9 67 chr15 31690975 31691874 -69688647 - L1MC1 LINE L1 -140 6473 5627 2838 87 0 5 chr15 31691874 31692252 -69688269 + MLT2A1 LTR ERVL 1 376 -68 10732 217 37 20 chr15 31692256 31692282 -69688239 - L1MC1 LINE L1 -814 5612 5588 2157 125 0 3 chr15 31692282 31692578 -69687943 - AluSx SINE Alu -15 297 3 10732 217 37 20 chr15 31692578 31692958 -69687563 - L1MC1 LINE L1 -838 5588 5216 414 0 0 0 chr15 31692958 31693004 -69687517 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 10732 217 37 20 chr15 31693004 31696469 -69684052 - L1MC1 LINE L1 -1210 5216 1708 1502 135 0 4 chr15 31696468 31696698 -69683823 - L1MC1 LINE L1 -5422 1004 776 * 222 118 0 0 chr15 31696724 31696758 -69683763 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1479 222 151 65 chr15 31696758 31697262 -69683259 + L1MDa LINE L1 296 842 -5698 1025 242 58 4 chr15 31697254 31697531 -69682990 + L1MDa LINE L1 2894 3185 -3355 * 1539 150 93 42 chr15 31697553 31697907 -69682614 - THE1C LTR MaLR -3 372 1 335 250 33 11 chr15 31697909 31698001 -69682520 + L1MCc LINE L1 381 474 -5949 1563 300 53 30 chr15 31698089 31699449 -69681072 + L1MCc LINE L1 954 2546 -4576 29 78 0 0 chr15 31699514 31699578 -69680943 + AT_rich Low_complexity Low_complexity 1 64 0 887 263 37 21 chr15 31699683 31700063 -69680458 + L1MCc LINE L1 2614 2999 -4123 3387 238 99 4 chr15 31700097 31700855 -69679666 + MLT1A1-int LTR MaLR 906 1735 0 1283 175 130 39 chr15 31700855 31701186 -69679335 + MLT1A1 LTR MaLR 1 361 -4 2231 230 59 1 chr15 31701253 31701938 -69678583 + L1MCc LINE L1 3015 3718 -3223 277 284 52 60 chr15 31702137 31702271 -69678250 + MIR SINE MIR 124 256 -6 248 204 0 0 chr15 31703589 31703633 -69676888 - L2 LINE L2 0 3272 3229 429 153 46 84 chr15 31703658 31703916 -69676605 - MER33 DNA MER1_type -18 345 1 314 231 130 9 chr15 31703916 31704024 -69676497 - L2 LINE L2 -52 3261 3141 245 276 65 70 chr15 31704005 31704219 -69676302 + L2 LINE L2 2764 2976 -338 * 1760 157 11 0 chr15 31704265 31704574 -69675947 + AluJo SINE Alu 1 312 0 195 257 165 9 chr15 31704578 31704687 -69675834 - MIR SINE MIR -16 246 121 2319 90 3 0 chr15 31704738 31705048 -69675473 - AluY SINE Alu 0 311 1 246 341 11 0 chr15 31705093 31705181 -69675340 - L1ME LINE L1 -483 5638 5550 2258 116 0 0 chr15 31705236 31705539 -69674982 - AluSx SINE Alu -9 303 1 231 283 138 31 chr15 31706268 31706427 -69674094 + MIR3 SINE MIR 16 191 -17 21 0 0 0 chr15 31707304 31707325 -69673196 + AT_rich Low_complexity Low_complexity 1 21 0 301 311 233 16 chr15 31708230 31708423 -69672098 - MIR SINE MIR 0 262 28 475 293 14 7 chr15 31708626 31708766 -69671755 - MIR SINE MIR -5 257 117 23 33 0 0 chr15 31708841 31708871 -69671650 + AT_rich Low_complexity Low_complexity 1 30 0 2183 77 0 4 chr15 31708896 31709191 -69671330 + AluSq SINE Alu 14 307 0 425 240 60 43 chr15 31709311 31709481 -69671040 - LTR33 LTR ERVL -307 214 6 2437 50 0 3 chr15 31709549 31709847 -69670674 + AluY SINE Alu 2 298 -13 317 236 110 110 chr15 31710799 31710981 -69669540 + L1ME3A LINE L1 5504 5685 -485 263 328 10 26 chr15 31710998 31711190 -69669331 + L1ME3A LINE L1 5782 5970 -200 339 25 0 0 chr15 31711339 31711379 -69669142 + (CA)n Simple_repeat Simple_repeat 1 40 0 26 30 0 0 chr15 31711472 31711505 -69669016 + AT_rich Low_complexity Low_complexity 1 33 0 197 346 104 20 chr15 31762324 31762526 -69617995 + L2 LINE L2 2829 3047 -225 238 224 0 0 chr15 31762626 31762675 -69617846 + L2 LINE L2 3264 3312 -1 1754 149 47 10 chr15 31763422 31763723 -69616798 - AluJb SINE Alu 0 312 1 255 125 0 0 chr15 31763847 31763887 -69616634 + (CCTA)n Simple_repeat Simple_repeat 3 42 0 682 327 72 25 chr15 31763957 31764135 -69616386 + MLT1K LTR MaLR 111 279 -309 327 25 0 0 chr15 31764135 31764175 -69616346 + (TG)n Simple_repeat Simple_repeat 2 41 0 682 327 72 25 chr15 31764175 31764440 -69616081 + MLT1K LTR MaLR 279 575 -13 1028 184 0 0 chr15 31764445 31764608 -69615913 + FRAM SINE Alu 1 160 -16 2520 36 7 0 chr15 31766404 31766706 -69613815 + AluY SINE Alu 1 304 -7 23 0 0 0 chr15 31767072 31767095 -69613426 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 31767504 31767526 -69612995 + AT_rich Low_complexity Low_complexity 1 22 0 224 242 0 45 chr15 31768336 31768402 -69612119 + MIR SINE MIR 29 91 -171 206 194 0 0 chr15 31768404 31768440 -69612081 - MIR SINE MIR -60 148 113 195 42 0 0 chr15 31769413 31769437 -69611084 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 776 205 0 0 chr15 31769466 31769593 -69610928 - FAM SINE Alu -41 144 18 233 56 0 28 chr15 31769602 31769638 -69610883 + (TTG)n Simple_repeat Simple_repeat 2 36 0 635 171 41 7 chr15 31769809 31769955 -69610566 + L1MC4a LINE L1 7070 7220 -588 261 0 0 0 chr15 31770055 31770084 -69610437 + (TTATA)n Simple_repeat Simple_repeat 1 29 0 2242 97 7 3 chr15 31771511 31771820 -69608701 + AluY SINE Alu 1 310 -1 284 291 236 0 chr15 31772261 31772371 -69608150 - MIR SINE MIR -33 229 94 604 227 39 7 chr15 31773007 31773161 -69607360 + MER63A DNA MER1_type 52 210 0 633 258 18 109 chr15 31773172 31773502 -69607019 + MER102b DNA MER1_type 33 332 -9 185 309 124 31 chr15 31773529 31773626 -69606895 + MIR3 SINE MIR 64 169 -39 2331 79 3 0 chr15 31774282 31774574 -69605947 - AluSp SINE Alu -20 293 1 187 256 73 24 chr15 31774605 31774687 -69605834 + L2 LINE L2 2272 2357 -957 306 242 0 66 chr15 31775177 31775268 -69605253 - L1ME2 LINE L1 -1 6163 6079 265 358 138 31 chr15 31775759 31776273 -69604248 - L2 LINE L2 -511 2803 2235 488 323 88 18 chr15 31776296 31776513 -69604008 + LTR33 LTR ERVL 37 268 -253 528 194 105 0 chr15 31776597 31776721 -69603800 + LTR33 LTR ERVL 382 518 -3 203 299 165 29 chr15 31777076 31777427 -69603094 - L2 LINE L2 -1307 2007 1609 1567 197 32 46 chr15 31777434 31777665 -69602856 - MLT1A1 LTR MaLR 0 365 139 2153 142 132 5 chr15 31777665 31778045 -69602476 - MSTA LTR MaLR 0 428 1 1567 197 32 46 chr15 31778045 31778183 -69602338 - MLT1A1 LTR MaLR -226 139 1 2259 119 47 11 chr15 31778415 31778777 -69601744 - THE1C LTR MaLR 0 375 1 5184 117 19 7 chr15 31778777 31779528 -69600993 - THE1C-int LTR MaLR 0 1580 821 791 163 129 0 chr15 31779628 31779775 -69600746 + AluSc SINE Alu 130 295 -14 537 318 69 19 chr15 31779778 31780039 -69600482 - L2 LINE L2 -810 2504 2231 2201 96 4 0 chr15 31780046 31780353 -69600168 - AluSg SINE Alu 0 308 1 629 98 0 0 chr15 31780546 31780638 -69599883 + AluSc SINE Alu 173 264 -45 1348 91 23 0 chr15 31781659 31781835 -69598686 + AluSc SINE Alu 97 276 -33 1106 118 11 0 chr15 31781836 31781923 -69598598 + (GAAA)n Simple_repeat Simple_repeat 1 267 0 1106 118 11 0 chr15 31781923 31782101 -69598420 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2596 139 31 2 chr15 31782417 31782833 -69597688 - MSTA LTR MaLR 0 428 1 358 303 134 0 chr15 31783039 31783158 -69597363 - MIR SINE MIR -33 229 95 413 304 58 12 chr15 31783354 31783525 -69596996 + MIR SINE MIR 27 205 -57 2144 102 27 3 chr15 31783636 31783929 -69596592 - AluSg SINE Alu -10 300 1 841 279 126 17 chr15 31784664 31784969 -69595552 + MLT1J2 LTR MaLR 5 333 -113 231 36 0 0 chr15 31785468 31785496 -69595025 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 27 0 0 0 chr15 31785778 31785805 -69594716 + AT_rich Low_complexity Low_complexity 1 27 0 198 171 0 0 chr15 31786921 31786962 -69593559 + (CA)n Simple_repeat Simple_repeat 1 41 0 646 268 114 15 chr15 31789533 31789805 -69590716 + L1MC4a LINE L1 5613 5911 -1897 2156 113 6 16 chr15 31790765 31791076 -69589445 + AluSg SINE Alu 1 308 -2 1914 131 38 0 chr15 31791092 31791382 -69589139 + AluSx SINE Alu 1 301 -11 192 314 128 69 chr15 31791773 31791875 -69588646 + L2 LINE L2 3134 3241 -31 2313 109 3 0 chr15 31791879 31792181 -69588340 - AluSx SINE Alu -9 303 1 373 219 0 0 chr15 31792287 31792351 -69588170 + L2 LINE L2 3243 3306 -7 198 171 0 0 chr15 31792357 31792398 -69588123 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 1274 189 60 0 chr15 31794307 31794609 -69585912 - MER33 DNA MER1_type -4 320 1 185 360 9 27 chr15 31795348 31795459 -69585062 - MIR SINE MIR -79 183 75 525 296 102 22 chr15 31797031 31797257 -69583264 - MIR SINE MIR -2 260 17 2303 64 28 0 chr15 31798905 31799188 -69581333 - AluY SINE Alu -20 291 1 23 0 0 0 chr15 31799661 31799684 -69580837 + AT_rich Low_complexity Low_complexity 1 23 0 192 328 16 0 chr15 31801773 31801837 -69578684 + MIR SINE MIR 175 239 -23 269 333 175 0 chr15 31801913 31802027 -69578494 + L2 LINE L2 3139 3272 0 2146 193 2 2 chr15 31806441 31806860 -69573661 + L1MB8 LINE L1 5291 5709 -475 842 166 12 12 chr15 31806862 31807031 -69573490 + L1MB8 LINE L1 6009 6177 -1 191 320 78 58 chr15 31807629 31807732 -69572789 - MIR SINE MIR -123 139 35 291 374 17 4 chr15 31808156 31808286 -69572235 + HAL1 LINE L1 810 946 -1561 1780 183 0 7 chr15 31808286 31808587 -69571934 - AluJb SINE Alu -13 299 1 291 374 17 4 chr15 31808587 31808686 -69571835 + HAL1 LINE L1 946 1042 -1465 316 277 100 70 chr15 31808688 31808988 -69571533 + L1MEd LINE L1 993 1301 -1206 180 125 0 0 chr15 31808998 31809030 -69571491 + (A)n Simple_repeat Simple_repeat 1 32 0 2052 113 10 13 chr15 31809054 31809356 -69571165 + AluSq SINE Alu 12 312 -1 301 286 141 72 chr15 31809394 31809656 -69570865 + HAL1 LINE L1 1521 1800 -707 24 0 0 0 chr15 31809825 31809849 -69570672 + AT_rich Low_complexity Low_complexity 1 24 0 242 281 31 10 chr15 31810346 31810442 -69570079 + L1ME4a LINE L1 5981 6078 -43 27 0 0 0 chr15 31810527 31810554 -69569967 + AT_rich Low_complexity Low_complexity 1 27 0 288 23 0 23 chr15 31811257 31811301 -69569220 + L1PA5 LINE L1 6112 6154 0 377 278 94 63 chr15 31812349 31812572 -69567949 + MIR SINE MIR 2 231 -31 514 202 11 0 chr15 31815807 31815901 -69564620 + FLAM_A SINE Alu 2 96 -46 217 284 83 28 chr15 31815920 31816029 -69564492 - MIR SINE MIR 0 262 148 367 301 48 0 chr15 31816493 31816596 -69563925 - L2 LINE L2 -1 3312 3205 180 333 107 0 chr15 31816730 31816805 -69563716 - L2 LINE L2 -205 3067 2985 365 308 164 13 chr15 31816809 31816968 -69563553 + MER5A DNA MER1_type 7 189 0 738 299 211 16 chr15 31816991 31817603 -69562918 - L2 LINE L2 -354 2960 2230 2054 119 32 66 chr15 31819354 31819731 -69560790 - THE1B LTR MaLR 0 364 1 2232 99 0 7 chr15 31823956 31824250 -69556271 + AluSx SINE Alu 1 292 -20 21 36 0 0 chr15 31825216 31825244 -69555277 + AT_rich Low_complexity Low_complexity 1 28 0 898 238 31 39 chr15 31825463 31825749 -69554772 + L3b LINE CR1 1108 1391 -192 22 35 0 0 chr15 31826056 31826085 -69554436 + AT_rich Low_complexity Low_complexity 1 29 0 3732 126 70 3 chr15 31827601 31828226 -69552295 - THE1C-int LTR MaLR -912 668 2 1918 150 50 17 chr15 31828247 31828608 -69551913 - THE1C LTR MaLR -2 373 1 731 290 28 48 chr15 31829441 31829689 -69550832 + MIR SINE MIR 2 244 -18 1716 116 93 4 chr15 31829702 31830024 -69550497 - AluSg SINE Alu 0 345 1 263 262 122 28 chr15 31830236 31830343 -69550178 - MIR SINE MIR -132 130 14 22 35 0 0 chr15 31831012 31831041 -69549480 + AT_rich Low_complexity Low_complexity 1 29 0 668 238 12 42 chr15 31831417 31831585 -69548936 + MER63A DNA MER1_type 46 208 -2 390 308 122 35 chr15 31831616 31831788 -69548733 + MIR SINE MIR 47 233 -29 1431 183 3 7 chr15 31831811 31832100 -69548421 - L1MB7 LINE L1 -192 6490 6203 338 98 66 16 chr15 31832098 31832159 -69548362 + L1M4 LINE L1 4530 4593 -1553 * 357 208 0 0 chr15 31832174 31832246 -69548275 + L1M4 LINE L1 4829 4900 -1246 769 154 45 224 chr15 31832250 31832587 -69547934 - L1MB7 LINE L1 -627 6045 5650 1947 108 25 4 chr15 31832587 31832912 -69547609 - AluSq SINE Alu 0 331 1 769 154 45 224 chr15 31832912 31833213 -69547308 - L1MB7 LINE L1 -1022 5650 5297 523 86 0 0 chr15 31833213 31833283 -69547238 + AluS SINE Alu 1 70 -243 769 154 45 224 chr15 31833283 31833520 -69547001 - L1MB7 LINE L1 -1375 5297 5357 2168 117 7 0 chr15 31833520 31833818 -69546703 + AluSx SINE Alu 1 300 -12 769 154 45 224 chr15 31833818 31833844 -69546677 - L1MB7 LINE L1 -1314 5358 5329 3775 219 129 26 chr15 31833861 31834723 -69545798 - L1MB7 LINE L1 -1553 5091 4318 2213 100 0 30 chr15 31834723 31835024 -69545497 + AluSx SINE Alu 1 292 -20 3775 219 129 26 chr15 31835024 31835708 -69544813 - L1MB7 LINE L1 -2326 4318 3387 360 268 45 9 chr15 31835726 31835838 -69544683 - L1MB7 LINE L1 -6064 478 363 409 344 58 36 chr15 31836017 31836241 -69544280 + MIR SINE MIR 28 256 -6 282 361 52 16 chr15 31836406 31836597 -69543924 + MIR SINE MIR 2 199 -63 191 342 27 45 chr15 31836954 31837065 -69543456 - MIR SINE MIR -78 130 22 452 271 49 49 chr15 31837316 31837519 -69543002 - MLT1L LTR MaLR -60 555 353 2220 92 0 7 chr15 31840270 31840606 -69539915 - AluY SINE Alu 0 311 1 235 246 33 33 chr15 31840679 31840740 -69539781 - MIR SINE MIR -78 130 70 424 265 151 22 chr15 31841375 31841560 -69538961 - MIR SINE MIR 0 262 54 3334 154 62 34 chr15 31842388 31842987 -69537534 + MER39 LTR ERV1 1 623 -84 2083 146 34 17 chr15 31842987 31843344 -69537177 + THE1B LTR MaLR 1 363 -1 3334 154 62 34 chr15 31843344 31843427 -69537094 + MER39 LTR ERV1 623 702 -5 224 228 0 0 chr15 31843659 31843716 -69536805 + A-rich Low_complexity Low_complexity 3 59 0 233 313 46 30 chr15 31843851 31843982 -69536539 + L2 LINE L2 3179 3311 -2 266 246 0 15 chr15 31845417 31845482 -69535039 - MIR SINE MIR 0 262 199 21 0 0 0 chr15 31846329 31846350 -69534171 + AT_rich Low_complexity Low_complexity 1 21 0 834 326 78 49 chr15 31847127 31847835 -69532686 + L2 LINE L2 2365 3093 -179 1012 192 25 20 chr15 31847905 31848125 -69532396 + AluJo SINE Alu 85 305 0 1229 186 30 4 chr15 31848383 31848614 -69531907 + AluJo SINE Alu 67 303 -9 364 289 96 0 chr15 31848998 31849154 -69531367 + LTR33A LTR ERVL 226 396 -127 1955 143 0 0 chr15 31850669 31850949 -69529572 + AluSx SINE Alu 5 284 -28 24 53 0 0 chr15 31851193 31851231 -69529290 + AT_rich Low_complexity Low_complexity 1 38 0 2167 94 4 0 chr15 31851255 31851531 -69528990 + AluSp SINE Alu 17 293 -20 396 0 0 0 chr15 31851580 31851624 -69528897 + (CA)n Simple_repeat Simple_repeat 1 44 0 225 0 0 0 chr15 31851623 31851648 -69528873 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 311 0 0 25 chr15 31852607 31852647 -69527874 + (CA)n Simple_repeat Simple_repeat 2 40 0 2228 100 0 0 chr15 31853704 31854011 -69526510 + AluSg SINE Alu 1 307 0 189 268 0 0 chr15 31854105 31854146 -69526375 + MIR SINE MIR 108 148 -60 256 248 149 41 chr15 31854181 31854302 -69526219 - MIR SINE MIR -124 138 5 572 169 71 49 chr15 31854367 31854550 -69525971 - MER53 DNA DNA -2 187 1 278 298 106 0 chr15 31854645 31854749 -69525772 - MIR3 SINE MIR -9 199 85 2513 56 0 0 chr15 31854753 31855059 -69525462 - AluY SINE Alu -4 307 2 192 345 0 0 chr15 31855264 31855319 -69525202 + L2 LINE L2 3249 3303 -10 2043 121 10 0 chr15 31855669 31855959 -69524562 - AluSx SINE Alu -19 293 1 395 207 95 113 chr15 31856531 31856753 -69523768 - LTR16B LTR ERVL -2 462 245 26 0 0 0 chr15 31856866 31856892 -69523629 + AT_rich Low_complexity Low_complexity 1 26 0 1356 194 35 7 chr15 31857165 31857448 -69523073 + MLT1A1 LTR MaLR 72 362 -3 1428 218 65 56 chr15 31857462 31857984 -69522537 + L1ME3A LINE L1 5568 6094 -76 21 36 0 0 chr15 31858143 31858171 -69522350 + AT_rich Low_complexity Low_complexity 1 28 0 1096 219 23 0 chr15 31858205 31858424 -69522097 - 7SLRNA srpRNA srpRNA -96 224 1 329 245 119 95 chr15 31858447 31858475 -69522046 - L1MC4 LINE L1 -140 7902 7876 225 0 0 0 chr15 31858475 31858500 -69522021 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 2260 45 7 21 chr15 31858504 31858795 -69521726 - AluY SINE Alu -24 287 1 329 245 119 95 chr15 31858795 31859055 -69521466 - L1MC4 LINE L1 -168 7874 7602 475 248 34 0 chr15 31859093 31859210 -69521311 + L2 LINE L2 3193 3313 0 2362 104 0 0 chr15 31859240 31859549 -69520972 - AluSg SINE Alu 0 310 2 374 295 93 54 chr15 31860681 31860939 -69519582 + L1ME4a LINE L1 5791 6058 -63 190 321 0 0 chr15 31861060 31861116 -69519405 + MIR SINE MIR 106 161 -101 22 35 0 0 chr15 31861185 31861214 -69519307 + AT_rich Low_complexity Low_complexity 1 29 0 2377 100 0 0 chr15 31861336 31861637 -69518884 - AluSx SINE Alu -11 301 1 2256 94 34 0 chr15 31862273 31862571 -69517950 + AluSx SINE Alu 1 308 -4 948 252 110 0 chr15 31862817 31863107 -69517414 + MER5C DNA MER1_type 1 322 -2 329 316 13 33 chr15 31863154 31863306 -69517215 + MIR SINE MIR 112 260 -2 221 83 28 0 chr15 31863971 31864007 -69516514 + (CAATA)n Simple_repeat Simple_repeat 4 40 0 647 286 67 13 chr15 31864008 31864232 -69516289 + MIR SINE MIR 21 256 -6 222 324 141 22 chr15 31864441 31864626 -69515895 + L2 LINE L2 2836 3042 -230 975 76 0 0 chr15 31865382 31865513 -69515008 + L1PA8A LINE L1 5974 6104 -27 189 0 0 0 chr15 31865513 31865534 -69514987 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 634 277 52 56 chr15 31866026 31866257 -69514264 + MIR SINE MIR 13 242 -20 238 125 25 0 chr15 31866294 31866334 -69514187 + HSMAR1 DNA Mariner 1247 1287 0 1725 167 0 4 chr15 31866418 31866699 -69513822 + AluJo SINE Alu 3 282 -30 198 319 198 0 chr15 31866744 31866835 -69513686 - MIR SINE MIR -122 140 32 215 170 64 0 chr15 31867054 31867101 -69513420 - L2 LINE L2 -2 3311 3262 2604 20 7 0 chr15 31867161 31867456 -69513065 - AluY SINE Alu -14 297 1 206 276 86 0 chr15 31869039 31869097 -69511424 - MIR3 SINE MIR -30 178 116 221 236 0 36 chr15 31869694 31869749 -69510772 + T-rich Low_complexity Low_complexity 3 55 0 899 112 0 22 chr15 31869997 31870131 -69510390 + AluJo/FLAM SINE Alu 1 131 -171 299 162 0 108 chr15 31870131 31870205 -69510316 + AluSc SINE Alu 132 197 -102 3836 177 58 21 chr15 31870222 31871096 -69509425 - Charlie1a DNA MER1_type -547 908 2 461 306 103 53 chr15 31871305 31871740 -69508781 - L1M4 LINE L1 -747 5399 4943 275 308 19 19 chr15 31871832 31871939 -69508582 + MIR3 SINE MIR 97 203 -5 2079 119 73 24 chr15 31871963 31872136 -69508385 - MER6 DNA MER2_type 0 865 702 2387 88 0 0 chr15 31872136 31872443 -69508078 + AluY SINE Alu 1 307 -4 2079 119 73 24 chr15 31872443 31872639 -69507882 - MER6 DNA MER2_type -163 702 478 1188 194 0 9 chr15 31872639 31872856 -69507665 + AluJo SINE Alu 87 301 -11 662 125 18 0 chr15 31872857 31872969 -69507552 - MER6 DNA MER2_type -380 485 372 231 114 0 0 chr15 31872969 31873004 -69507517 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 216 259 37 0 chr15 31873277 31873331 -69507190 - MIR3 SINE MIR -2 206 151 * 326 278 105 80 chr15 31873321 31873513 -69507008 + L2 LINE L2 2423 2628 -686 1569 199 36 9 chr15 31873513 31873845 -69506676 + MER58B DNA MER1_type 1 341 0 326 278 105 80 chr15 31873845 31873965 -69506556 + L2 LINE L2 2628 2743 -571 657 153 8 0 chr15 31873975 31874093 -69506428 + Charlie5 DNA MER1_type 5 123 -2489 1414 182 46 32 chr15 31874100 31874473 -69506048 + Charlie5 DNA MER1_type 2243 2620 0 398 293 190 57 chr15 31874481 31874976 -69505545 + L2 LINE L2 2742 3298 -15 299 248 219 19 chr15 31874986 31875091 -69505430 - MIR SINE MIR -60 148 23 22 35 0 0 chr15 31876251 31876280 -69504241 + AT_rich Low_complexity Low_complexity 1 29 0 1023 176 73 30 chr15 31876312 31876545 -69503976 - MIR SINE MIR -2 260 18 388 245 108 0 chr15 31876683 31876785 -69503736 - MER91A DNA MER1_type -27 169 57 2306 136 53 5 chr15 31878097 31878494 -69502027 - L1PA16 LINE L1 -28 6138 5723 220 136 51 0 chr15 31879541 31879600 -69500921 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 713 170 27 112 chr15 31879641 31879864 -69500657 - MLT1D LTR MaLR -301 204 1 345 100 0 0 chr15 31881075 31881125 -69499396 + (CA)n Simple_repeat Simple_repeat 1 50 0 2074 135 0 0 chr15 31881284 31881580 -69498941 - AluSx SINE Alu -16 296 1 2614 45 0 3 chr15 31883905 31884217 -69496304 + AluY SINE Alu 1 311 0 410 314 30 18 chr15 31884442 31884611 -69495910 - MER5B DNA MER1_type 0 178 8 25 51 0 0 chr15 31884704 31884743 -69495778 + AT_rich Low_complexity Low_complexity 1 39 0 14110 202 29 14 chr15 31884748 31887395 -69493126 - L1PB3 LINE L1 -2 6868 4076 2156 125 3 0 chr15 31887395 31887684 -69492837 - AluSg SINE Alu -20 290 1 14110 202 29 14 chr15 31887684 31889568 -69490953 - L1PB3 LINE L1 -2794 4076 2221 22 35 0 0 chr15 31890598 31890627 -69489894 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr15 31890678 31890699 -69489822 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr15 31892605 31892628 -69487893 + AT_rich Low_complexity Low_complexity 1 23 0 296 368 18 18 chr15 31895350 31895464 -69485057 - L2 LINE L2 0 3272 3159 612 266 117 5 chr15 31895719 31895901 -69484620 + MIR SINE MIR 48 250 -12 344 327 0 0 chr15 31895901 31896002 -69484519 + MER5B DNA MER1_type 3 103 -75 33 56 0 0 chr15 31896039 31896093 -69484428 + AT_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr15 31897624 31897646 -69482875 + AT_rich Low_complexity Low_complexity 1 22 0 264 313 0 0 chr15 31898503 31898570 -69481951 + CT-rich Low_complexity Low_complexity 6 72 0 211 296 0 0 chr15 31898830 31898884 -69481637 + L2 LINE L2 3006 3059 -254 1258 276 75 41 chr15 31899071 31899625 -69480896 + MLT1F1 LTR MaLR 1 567 0 193 82 41 41 chr15 31900485 31900534 -69479987 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 25 65 0 0 chr15 31901492 31901538 -69478983 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr15 31901920 31901949 -69478572 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 31901984 31902006 -69478515 + AT_rich Low_complexity Low_complexity 1 22 0 205 369 18 0 chr15 31902181 31902292 -69478229 + L2 LINE L2 2249 2361 -953 2127 48 0 0 chr15 31902310 31902562 -69477959 - AluY SINE Alu -26 285 34 960 216 5 0 chr15 31902710 31902895 -69477626 - MER5A DNA MER1_type 0 189 4 2339 81 16 3 chr15 31903683 31903990 -69476531 + AluSp SINE Alu 1 311 -2 289 287 13 33 chr15 31904859 31905009 -69475512 + CT-rich Low_complexity Low_complexity 2 148 0 6951 142 31 6 chr15 31905384 31906562 -69473959 - Tigger3b DNA MER2_type 0 1231 25 21 0 0 0 chr15 31906597 31906618 -69473903 + AT_rich Low_complexity Low_complexity 1 21 0 2193 110 7 3 chr15 31906624 31906923 -69473598 - AluSx SINE Alu -11 301 2 252 350 60 17 chr15 31907233 31907350 -69473171 - MIR SINE MIR -66 142 21 1981 169 19 22 chr15 31907653 31907787 -69472734 + MLT1A1 LTR MaLR 1 134 -231 2809 80 3 11 chr15 31907787 31908164 -69472357 + THE1C LTR MaLR 2 375 0 1981 169 19 22 chr15 31908164 31908395 -69472126 + MLT1A1 LTR MaLR 134 365 0 316 218 82 9 chr15 31908597 31908707 -69471814 + L1MC4 LINE L1 7894 8011 -31 205 305 17 0 chr15 31909215 31909274 -69471247 + L2 LINE L2 3211 3270 -2 2230 96 7 0 chr15 31909650 31909943 -69470578 + AluSg SINE Alu 1 295 -15 899 164 7 13 chr15 31909955 31910107 -69470414 + FRAM SINE Alu 8 158 -18 313 259 254 9 chr15 31910282 31910477 -69470044 + MIR SINE MIR 8 259 -3 294 73 0 0 chr15 31911380 31911421 -69469100 + (TCCA)n Simple_repeat Simple_repeat 4 44 0 593 347 47 11 chr15 31911790 31912064 -69468457 + L3 LINE CR1 475 758 -819 231 88 0 0 chr15 31912086 31912120 -69468401 + (CA)n Simple_repeat Simple_repeat 1 34 0 38 39 0 0 chr15 31912410 31912462 -69468059 + AT_rich Low_complexity Low_complexity 1 52 0 254 262 0 0 chr15 31912586 31912647 -69467874 - MIR SINE MIR -66 196 136 219 69 0 0 chr15 31912830 31912859 -69467662 + (CA)n Simple_repeat Simple_repeat 2 30 0 2057 140 13 0 chr15 31912928 31913236 -69467285 + AluJo SINE Alu 1 312 0 306 333 188 27 chr15 31913244 31913505 -69467016 + L3 LINE CR1 1264 1566 -11 181 336 65 28 chr15 31914180 31914287 -69466234 - L2 LINE L2 -5 3267 3157 249 333 34 8 chr15 31914560 31914677 -69465844 - MIR3 SINE MIR -13 195 76 204 254 70 79 chr15 31915229 31915343 -69465178 - MIR SINE MIR -45 217 105 200 196 54 0 chr15 31915903 31915959 -69464562 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 772 207 0 27 chr15 31916291 31916441 -69464080 - FRAM SINE Alu -18 158 13 21 36 0 0 chr15 31916451 31916479 -69464042 + AT_rich Low_complexity Low_complexity 1 28 0 1935 129 7 34 chr15 31916490 31916641 -69463880 - AluSx SINE Alu -26 286 145 2832 7 0 0 chr15 31916641 31916946 -69463575 - AluY SINE Alu -6 305 1 1935 129 7 34 chr15 31916946 31917088 -69463433 - AluSx SINE Alu -167 145 1 769 144 32 0 chr15 31917108 31917233 -69463288 - FLAM_C SINE Alu -4 129 1 399 363 29 37 chr15 31917560 31917805 -69462716 + MIR SINE MIR 20 262 0 377 276 81 16 chr15 31918146 31918269 -69462252 - MIR SINE MIR -111 151 21 447 261 42 7 chr15 31918287 31918403 -69462118 + MIR SINE MIR 14 130 -78 2582 34 0 43 chr15 31918466 31918789 -69461732 - AluY SINE Alu 0 311 3 754 269 96 34 chr15 31918883 31919206 -69461315 + LTR16C LTR ERVL 149 491 0 457 284 133 15 chr15 31919719 31919983 -69460538 - L1ME4a LINE L1 0 6121 5827 291 303 162 0 chr15 31920077 31920219 -69460302 - L1ME4a LINE L1 -437 5684 5520 361 239 123 8 chr15 31922186 31922316 -69458205 + MIR SINE MIR 3 147 -115 406 318 54 50 chr15 31922389 31922628 -69457893 - MIR SINE MIR -12 250 11 195 388 11 56 chr15 31922703 31922881 -69457640 - MIR SINE MIR -86 176 7 4435 186 15 2 chr15 31923404 31924645 -69455876 + L1PBb LINE L1 253 1509 -4695 23 0 0 0 chr15 31925992 31926015 -69454506 + AT_rich Low_complexity Low_complexity 1 23 0 210 150 0 0 chr15 31926149 31926189 -69454332 + (A)n Simple_repeat Simple_repeat 1 40 0 1810 159 0 3 chr15 31927374 31927664 -69452857 - AluJo SINE Alu -23 289 1 204 228 0 0 chr15 31928034 31928091 -69452430 + CT-rich Low_complexity Low_complexity 4 60 0 258 56 0 0 chr15 31928179 31928215 -69452306 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr15 31928601 31928623 -69451898 + AT_rich Low_complexity Low_complexity 1 22 0 275 246 71 40 chr15 31932225 31932313 -69448208 - MARNA DNA Mariner -330 256 161 2197 62 13 52 chr15 31932313 31932619 -69447902 + AluY SINE Alu 1 294 -17 275 246 71 40 chr15 31932619 31932656 -69447865 - MARNA DNA Mariner -425 161 127 22 0 0 0 chr15 31933897 31933919 -69446602 + AT_rich Low_complexity Low_complexity 1 22 0 477 0 0 0 chr15 31934041 31934094 -69446427 + (CA)n Simple_repeat Simple_repeat 2 54 0 24 0 0 0 chr15 31935808 31935832 -69444689 + AT_rich Low_complexity Low_complexity 1 24 0 180 111 0 0 chr15 31937211 31937238 -69443283 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 3782 177 59 9 chr15 31937337 31938278 -69442243 - L1MB7 LINE L1 -17 6167 5176 387 0 0 0 chr15 31938613 31938656 -69441865 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1534 180 0 24 chr15 31938657 31938952 -69441569 - AluJb SINE Alu -24 288 1 536 125 0 45 chr15 31939116 31939204 -69441317 + AluJ/FLAM SINE Alu 1 84 -228 262 299 43 43 chr15 31939337 31939454 -69441067 + MIR SINE MIR 29 145 -63 202 239 75 60 chr15 31940986 31941053 -69439468 + L2 LINE L2 3246 3313 0 340 298 74 54 chr15 31941661 31941919 -69438602 + MLT1J LTR MaLR 3 265 -246 22 0 0 0 chr15 31944784 31944806 -69435715 + AT_rich Low_complexity Low_complexity 1 22 0 2211 95 3 0 chr15 31945907 31946191 -69434330 - AluSp SINE Alu -1 312 28 2110 109 0 43 chr15 31946269 31946571 -69433950 + AluSg SINE Alu 1 289 -21 408 40 0 0 chr15 31949107 31949157 -69431364 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 2469 68 0 0 chr15 31949699 31950010 -69430511 + AluY SINE Alu 1 311 0 23 0 0 0 chr15 31950400 31950423 -69430098 + AT_rich Low_complexity Low_complexity 1 23 0 29 47 0 0 chr15 31953005 31953048 -69427473 + AT_rich Low_complexity Low_complexity 1 43 0 304 363 18 12 chr15 31953265 31953433 -69427088 + LTR67 LTR ERVL 380 548 -9 311 293 182 0 chr15 31953486 31953585 -69426936 + MIR SINE MIR 13 129 -133 2462 70 0 13 chr15 31954625 31954925 -69425596 + AluY SINE Alu 1 296 -15 477 114 0 0 chr15 31955428 31955498 -69425023 - MLT1A2 LTR MaLR 0 374 305 39 88 0 0 chr15 31955697 31955799 -69424722 + AT_rich Low_complexity Low_complexity 1 102 0 22 0 0 0 chr15 31957569 31957591 -69422930 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 31957664 31957686 -69422835 + AT_rich Low_complexity Low_complexity 1 22 0 1353 233 89 33 chr15 31957689 31958140 -69422381 - L1ME1 LINE L1 -21 6145 5670 473 219 30 48 chr15 31958154 31958353 -69422168 + MLT1D-int LTR MaLR 1233 1370 -1 1862 212 30 38 chr15 31958355 31958859 -69421662 + MLT1D LTR MaLR 2 501 -4 272 311 87 0 chr15 31960018 31960121 -69420400 - MIR3 SINE MIR -5 203 92 2184 164 37 39 chr15 31960242 31960674 -69419847 - MSTB1 LTR MaLR 0 432 2 3091 153 30 73 chr15 31960871 31961475 -69419046 - L1MB7 LINE L1 0 6184 5614 1817 170 0 14 chr15 31961475 31961764 -69418757 - AluJo SINE Alu -27 285 1 3091 153 30 73 chr15 31961764 31961872 -69418649 - L1MB7 LINE L1 -570 5614 5503 1061 222 109 6 chr15 31961889 31962209 -69418312 + LTR48 LTR ERV1 106 458 -329 424 170 98 9 chr15 31962207 31962319 -69418202 + LTR48 LTR ERV1 618 739 -48 * 198 250 0 39 chr15 31962669 31962721 -69417800 - MIR3 SINE MIR -21 187 138 541 289 90 78 chr15 31963175 31963383 -69417138 - L1M4 LINE L1 -1411 4735 4531 1896 154 24 3 chr15 31963383 31963681 -69416840 - AluSx SINE Alu -8 304 1 541 289 90 78 chr15 31963681 31963778 -69416743 - L1M4 LINE L1 -1615 4531 4437 1928 129 20 3 chr15 31963778 31964072 -69416449 + AluSc SINE Alu 1 299 -10 541 289 90 78 chr15 31964072 31964342 -69416179 - L1M4 LINE L1 -1709 4437 4152 343 303 91 24 chr15 31964443 31964608 -69415913 - L1M4 LINE L1 -3171 2975 2800 1349 217 0 8 chr15 31964957 31965197 -69415324 - MER8 DNA MER2_type 0 239 2 486 296 88 32 chr15 31965248 31965745 -69414776 + L1ME3A LINE L1 818 1342 -4863 2434 87 0 0 chr15 31965900 31966209 -69414312 + AluY SINE Alu 1 309 -2 323 335 25 58 chr15 31966299 31966577 -69413944 + L1ME3A LINE L1 1877 2145 -4251 250 271 0 0 chr15 31966628 31966698 -69413823 + L1ME3A LINE L1 2179 2248 -3967 * 983 252 133 2 chr15 31966681 31967101 -69413420 + L1ME3A LINE L1 4818 5292 -923 909 260 138 10 chr15 31967104 31967511 -69413010 + L1ME3A LINE L1 5569 6027 -204 317 271 165 30 chr15 31967586 31967719 -69412802 + L1ME3A LINE L1 6057 6207 -32 21 0 0 0 chr15 31967728 31967749 -69412772 + AT_rich Low_complexity Low_complexity 1 21 0 184 220 40 20 chr15 31968363 31968413 -69412108 + MIR SINE MIR 79 129 -133 598 275 39 11 chr15 31968545 31968723 -69411798 + MIR SINE MIR 7 189 -73 1055 208 29 70 chr15 31968830 31968953 -69411568 - MER2 DNA MER2_type -7 338 211 1995 88 66 0 chr15 31968953 31969225 -69411296 + AluSx SINE Alu 1 290 -22 1055 208 29 70 chr15 31969225 31969443 -69411078 - MER2 DNA MER2_type -134 211 11 506 250 56 28 chr15 31970867 31971047 -69409474 - MLT1L LTR MaLR -72 543 359 342 0 0 0 chr15 31975124 31975162 -69405359 + (TG)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr15 31975542 31975563 -69404958 + AT_rich Low_complexity Low_complexity 1 21 0 228 86 0 0 chr15 31976044 31976079 -69404442 + (CA)n Simple_repeat Simple_repeat 2 36 0 1822 133 33 36 chr15 31976653 31976954 -69403567 - AluJo SINE Alu -12 300 1 22 35 0 0 chr15 31977396 31977425 -69403096 + AT_rich Low_complexity Low_complexity 1 29 0 2536 50 0 0 chr15 31977469 31977768 -69402753 - AluY SINE Alu -12 299 1 438 275 149 34 chr15 31977779 31978057 -69402464 - L1ME4a LINE L1 -70 6051 5806 2432 80 3 0 chr15 31978057 31978359 -69402162 - AluY SINE Alu -8 303 1 438 275 149 34 chr15 31978359 31978523 -69401998 - L1ME4a LINE L1 -315 5806 5558 487 0 0 0 chr15 31980032 31980086 -69400435 + (TTTA)n Simple_repeat Simple_repeat 3 104 0 1912 154 0 0 chr15 31980086 31980372 -69400149 - AluSx SINE Alu -1 339 1 1948 122 0 0 chr15 31980449 31980712 -69399809 + AluSx SINE Alu 40 302 -10 545 273 203 25 chr15 31981683 31981969 -69398552 + L2 LINE L2 2976 3312 -1 23 0 0 0 chr15 31982592 31982615 -69397906 + AT_rich Low_complexity Low_complexity 1 23 0 201 291 97 39 chr15 31982650 31982753 -69397768 - L2 LINE L2 -21 3292 3184 247 349 14 57 chr15 31982909 31983118 -69397403 - L2 LINE L2 -438 2876 2677 21 0 0 0 chr15 31984469 31984490 -69396031 + AT_rich Low_complexity Low_complexity 1 21 0 2323 100 0 6 chr15 31984943 31985254 -69395267 - AluSc SINE Alu 0 309 1 212 147 0 0 chr15 31987947 31987981 -69392540 + (GAAAA)n Simple_repeat Simple_repeat 4 37 0 21 0 0 0 chr15 31988410 31988431 -69392090 + AT_rich Low_complexity Low_complexity 1 21 0 277 171 14 14 chr15 31989547 31989617 -69390904 + T-rich Low_complexity Low_complexity 4 73 0 236 267 144 22 chr15 31992314 31992404 -69388117 - L2 LINE L2 -25 3247 3147 1103 122 113 50 chr15 31992428 31992649 -69387872 - MER46A DNA MER2_type 0 236 2 201 237 17 17 chr15 31992908 31992967 -69387554 - L2 LINE L2 -553 2761 2703 1648 94 31 20 chr15 31993014 31993269 -69387252 + THE1C LTR MaLR 1 258 -117 2451 55 3 0 chr15 31994184 31994475 -69386046 - AluY SINE Alu -19 292 1 21 0 0 0 chr15 31995452 31995473 -69385048 + AT_rich Low_complexity Low_complexity 1 21 0 775 269 123 0 chr15 31996473 31996700 -69383821 - MIR SINE MIR 0 262 8 306 260 115 10 chr15 31998013 31998117 -69382404 - MIR SINE MIR -96 166 52 226 309 12 0 chr15 31998289 31998370 -69382151 - L3b LINE CR1 -176 1407 1326 415 307 125 21 chr15 31998380 31998572 -69381949 + MIR SINE MIR 50 261 -1 2305 169 133 21 chr15 31999048 31999580 -69380941 - L1MD3 LINE L1 0 7995 7404 410 247 0 32 chr15 31999580 31999673 -69380848 - MLT1F1 LTR MaLR -442 125 36 257 202 173 0 chr15 31999680 31999784 -69380737 - L1MD3 LINE L1 -885 7110 6989 731 254 32 32 chr15 32001982 32002199 -69378322 - L2 LINE L2 -5 3308 3092 456 157 78 52 chr15 32006891 32007006 -69373515 + MER106B DNA MER1_type 939 1056 -3 194 264 65 83 chr15 32007040 32007299 -69373222 - L3 LINE CR1 -214 1363 1071 672 257 53 19 chr15 32008976 32009182 -69371339 - MIR SINE MIR -48 214 2 424 320 170 17 chr15 32009289 32009589 -69370932 + MLT1G1 LTR MaLR 175 520 -75 249 200 40 27 chr15 32010454 32010529 -69369992 + L1MEd LINE L1 495 570 -5549 545 298 83 25 chr15 32010956 32011583 -69368938 + L1MEd LINE L1 993 1748 -742 1778 201 87 69 chr15 32011662 32011698 -69368823 - MLT2B1 LTR ERVL -8 512 478 249 33 0 0 chr15 32011698 32011728 -69368793 + (TG)n Simple_repeat Simple_repeat 2 31 0 1778 201 87 69 chr15 32011728 32012121 -69368400 - MLT2B1 LTR ERVL -42 478 70 1525 183 42 23 chr15 32012121 32012427 -69368094 + AluJb SINE Alu 1 312 0 1778 201 87 69 chr15 32012427 32012489 -69368032 - MLT2B1 LTR ERVL -450 70 11 19745 22 2 2 chr15 32012781 32015137 -69365384 - L1PA3 LINE L1 -1067 5079 2724 7649 25 1 0 chr15 32015137 32016202 -69364319 + L1PA3 LINE L1 5090 6155 0 952 96 7 22 chr15 32016227 32016362 -69364159 + AluJb SINE Alu 1 133 -179 615 173 32 12 chr15 32016379 32016612 -69363909 + GA-rich Low_complexity Low_complexity 1 237 0 231 88 0 0 chr15 32016654 32016688 -69363833 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 227 225 81 50 chr15 32016855 32017015 -69363506 + L1MEd LINE L1 2132 2296 -3833 548 255 235 16 chr15 32017230 32017916 -69362605 + L1MEd LINE L1 2438 3273 -2856 2438 67 0 0 chr15 32019897 32020197 -69360324 - AluY SINE Alu -11 300 1 21 0 0 0 chr15 32024834 32024855 -69355666 + AT_rich Low_complexity Low_complexity 1 21 0 353 291 80 94 chr15 32025093 32025194 -69355327 + MIR SINE MIR 52 153 -109 2009 144 10 0 chr15 32025194 32025485 -69355036 + AluSq SINE Alu 1 294 -19 353 291 80 94 chr15 32025485 32025596 -69354925 + MIR SINE MIR 153 261 -1 504 209 225 11 chr15 32025646 32025832 -69354689 + MIR SINE MIR 25 251 -11 29 28 0 0 chr15 32026198 32026234 -69354287 + AT_rich Low_complexity Low_complexity 1 36 0 395 151 14 14 chr15 32026261 32026334 -69354187 - AluJ/FLAM SINE Alu -228 74 2 21 0 0 0 chr15 32026433 32026454 -69354067 + AT_rich Low_complexity Low_complexity 1 21 0 1809 149 0 55 chr15 32026460 32026769 -69353752 + AluJo SINE Alu 2 293 -19 21 0 0 0 chr15 32027068 32027089 -69353432 + AT_rich Low_complexity Low_complexity 1 21 0 227 323 181 38 chr15 32029623 32029756 -69350765 - L2 LINE L2 0 3272 3121 201 313 116 18 chr15 32029802 32029914 -69350607 - L2 LINE L2 0 3272 3150 1320 196 32 12 chr15 32030449 32030699 -69349822 + AluJo SINE Alu 28 282 -30 744 71 0 0 chr15 32030707 32030806 -69349715 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 630 249 62 85 chr15 32032219 32032524 -69347997 - MLT1K LTR MaLR -11 577 280 1835 119 7 63 chr15 32032548 32032850 -69347671 + AluJo SINE Alu 1 285 -27 391 120 0 63 chr15 32032887 32033062 -69347459 + (TA)n Simple_repeat Simple_repeat 2 165 0 188 309 0 0 chr15 32033527 32033569 -69346952 - L3b LINE CR1 -12 1571 1530 232 246 62 0 chr15 32035158 32035223 -69345298 + MIR3 SINE MIR 100 168 -40 2206 132 0 0 chr15 32035960 32036263 -69344258 + AluSx SINE Alu 1 303 -9 221 205 0 13 chr15 32036904 32036982 -69343539 + GA-rich Low_complexity Low_complexity 1 77 0 216 0 0 0 chr15 32038088 32038112 -69342409 + (T)n Simple_repeat Simple_repeat 1 24 0 27 62 0 0 chr15 32038966 32039014 -69341507 + AT_rich Low_complexity Low_complexity 1 48 0 2192 119 0 0 chr15 32041890 32042193 -69338328 - AluSg SINE Alu -7 303 1 351 264 151 19 chr15 32043125 32043284 -69337237 + MIR SINE MIR 49 228 -34 266 354 114 43 chr15 32043389 32043643 -69336878 + L2 LINE L2 2997 3268 -4 1738 297 103 23 chr15 32044072 32044691 -69335830 - MER115 DNA AcHobo -23 670 2 193 285 127 57 chr15 32045718 32045876 -69334645 + L3b LINE CR1 1164 1332 -251 320 274 111 17 chr15 32046164 32046281 -69334240 - MER5B DNA MER1_type -1 177 50 2486 243 48 54 chr15 32046799 32047712 -69332809 - L1ME1 LINE L1 -5 6230 5323 6649 221 63 34 chr15 32047713 32048582 -69331939 - L1ME1 LINE L1 -1200 5015 4172 1711 174 11 11 chr15 32048582 32048869 -69331652 + AluJo SINE Alu 12 298 -14 6649 221 63 34 chr15 32048869 32049864 -69330657 - L1ME1 LINE L1 -2043 4172 3207 316 0 45 0 chr15 32049864 32049908 -69330613 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 6649 221 63 34 chr15 32049908 32049920 -69330601 - L1ME1 LINE L1 -3008 3207 3197 6945 63 15 0 chr15 32049920 32050928 -69329593 - L1PA6 LINE L1 -13 6141 5130 6649 221 63 34 chr15 32050928 32051343 -69329178 - L1ME1 LINE L1 -3018 3197 2657 977 281 45 72 chr15 32051327 32051796 -69328725 - L1ME1 LINE L1 -5940 456 1 * 324 0 0 0 chr15 32051933 32051969 -69328552 + (TC)n Simple_repeat Simple_repeat 1 36 0 279 0 0 0 chr15 32052585 32052616 -69327905 + (TG)n Simple_repeat Simple_repeat 2 32 0 810 229 6 0 chr15 32053188 32053358 -69327163 - FRAM SINE Alu -5 171 1 679 270 38 11 chr15 32053570 32053755 -69326766 - MIR SINE MIR 0 262 73 413 324 77 45 chr15 32053744 32053991 -69326530 - L2 LINE L2 -553 2761 2507 * 22 0 0 0 chr15 32055007 32055029 -69325492 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr15 32056968 32056991 -69323530 + (A)n Simple_repeat Simple_repeat 1 23 0 180 111 0 0 chr15 32058170 32058197 -69322324 + (T)n Simple_repeat Simple_repeat 1 27 0 1989 138 0 7 chr15 32058307 32058603 -69321918 - AluSc SINE Alu -15 294 1 275 217 53 121 chr15 32061884 32062239 -69318282 + L1MC5 LINE L1 7452 7782 -179 21 0 0 0 chr15 32062395 32062416 -69318105 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr15 32064021 32064047 -69316474 + AT_rich Low_complexity Low_complexity 1 26 0 2409 86 0 3 chr15 32066514 32066817 -69313704 + AluSx SINE Alu 1 302 -10 1517 285 98 4 chr15 32067539 32068052 -69312469 + L2 LINE L2 1935 2495 -819 894 255 112 25 chr15 32068055 32068542 -69311979 + L2 LINE L2 2745 3290 -23 1307 215 3 44 chr15 32068740 32069075 -69311446 + AluJo SINE Alu 1 323 0 427 216 10 0 chr15 32069734 32069831 -69310690 - MER103 DNA DNA -68 98 1 319 307 106 17 chr15 32070057 32070236 -69310285 - MER102b DNA MER1_type -23 318 124 2326 94 0 0 chr15 32070236 32070534 -69309987 + AluSp SINE Alu 1 298 -15 1119 163 0 0 chr15 32070559 32070731 -69309790 - FRAM SINE Alu -5 171 1 2021 153 10 47 chr15 32071154 32071539 -69308982 - MLT1B LTR MaLR -5 385 15 205 311 93 43 chr15 32072351 32072512 -69308009 - L2 LINE L2 -1 3312 3144 272 329 180 0 chr15 32072747 32072908 -69307613 - L2 LINE L2 -467 2847 2658 1879 165 10 0 chr15 32073239 32073542 -69306979 + AluJb SINE Alu 1 306 -6 501 326 28 17 chr15 32074084 32074262 -69306259 - L2 LINE L2 -1 3312 3133 24 0 0 0 chr15 32074977 32075001 -69305520 + AT_rich Low_complexity Low_complexity 1 24 0 2254 108 0 0 chr15 32075313 32075608 -69304913 + AluSx SINE Alu 1 295 -17 261 0 0 0 chr15 32076299 32076328 -69304193 + (CA)n Simple_repeat Simple_repeat 1 29 0 1570 142 68 29 chr15 32076382 32076663 -69303858 - AluJb SINE Alu -5 307 16 199 248 144 96 chr15 32077161 32077286 -69303235 - MIR3 SINE MIR -7 201 71 369 287 176 37 chr15 32077641 32077857 -69302664 + MIR SINE MIR 2 247 -15 197 347 50 33 chr15 32078985 32079106 -69301415 - L3 LINE CR1 -1446 131 9 287 325 48 12 chr15 32080024 32080107 -69300414 - MIR SINE MIR -65 143 58 293 82 20 0 chr15 32080841 32080890 -69299631 + (TA)n Simple_repeat Simple_repeat 2 51 0 834 181 0 0 chr15 32081041 32081174 -69299347 + AluSq/x SINE Alu 1 133 -179 4442 66 12 13 chr15 32081189 32081791 -69298730 + L1PA10 LINE L1 5560 6160 -8 23 0 0 0 chr15 32083240 32083263 -69297258 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr15 32084196 32084216 -69296305 + (A)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr15 32085893 32085916 -69294605 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 23 0 0 0 chr15 32086223 32086246 -69294275 + AT_rich Low_complexity Low_complexity 1 23 0 3796 164 26 11 chr15 32087066 32087761 -69292760 + MER44D DNA MER2_type 1 705 0 327 185 0 0 chr15 32088039 32088093 -69292428 + MIR SINE MIR 93 146 -62 1920 147 118 11 chr15 32089262 32089644 -69290877 - MSTA LTR MaLR -5 423 1 348 299 101 19 chr15 32089647 32089854 -69290667 - L1ME4a LINE L1 -206 5915 5692 246 32 0 0 chr15 32090344 32090375 -69290146 + (TGG)n Simple_repeat Simple_repeat 1 31 0 433 273 30 20 chr15 32090375 32090573 -69289948 - L1ME4a LINE L1 -420 5701 5502 243 0 0 0 chr15 32092108 32092135 -69288386 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6892 32 6 0 chr15 32092135 32092997 -69287524 - L1PA5 LINE L1 -12 6142 5276 223 178 0 0 chr15 32093818 32093863 -69286658 + T-rich Low_complexity Low_complexity 1 45 0 1322 260 67 60 chr15 32094281 32094673 -69285848 + MLT1J LTR MaLR 12 409 -102 2239 128 0 0 chr15 32094673 32094985 -69285536 - AluSx SINE Alu 0 312 1 1322 260 67 60 chr15 32094985 32095088 -69285433 + MLT1J LTR MaLR 409 510 -1 21 57 0 0 chr15 32095262 32095297 -69285224 + AT_rich Low_complexity Low_complexity 1 35 0 5869 142 8 41 chr15 32095336 32096802 -69283719 - L1MA10 LINE L1 -3 6331 4915 244 324 72 36 chr15 32097867 32098006 -69282515 + MIR3 SINE MIR 21 164 -44 2605 158 15 24 chr15 32098803 32099271 -69281250 - MLT2C2 LTR ERVL 0 464 1 291 193 36 60 chr15 32099271 32099354 -69281167 - MIR SINE MIR -99 163 83 230 81 27 0 chr15 32099723 32099760 -69280761 + (TC)n Simple_repeat Simple_repeat 1 38 0 205 280 19 0 chr15 32099912 32100019 -69280502 + GA-rich Low_complexity Low_complexity 1 109 0 1911 135 3 3 chr15 32100071 32100378 -69280143 - AluSx SINE Alu 0 307 1 528 228 68 6 chr15 32100463 32100625 -69279896 + MER5B DNA MER1_type 1 172 -6 1326 43 0 0 chr15 32100833 32100994 -69279527 + L1PA7 LINE L1 5994 6154 0 411 217 151 0 chr15 32101042 32101148 -69279373 - MER5B DNA MER1_type -53 125 4 2187 93 3 3 chr15 32101286 32101576 -69278945 + AluSg SINE Alu 10 299 -11 826 265 45 19 chr15 32101782 32102095 -69278426 + MER46C DNA MER2_type 12 332 -6 960 195 19 10 chr15 32102929 32103134 -69277387 + MER3 DNA MER1_type 3 209 0 279 0 0 0 chr15 32103763 32103794 -69276727 + (TG)n Simple_repeat Simple_repeat 1 31 0 219 69 0 0 chr15 32105508 32105537 -69274984 + (TATG)n Simple_repeat Simple_repeat 2 30 0 257 264 0 0 chr15 32107169 32107222 -69273299 - L2 LINE L2 -7 3306 3254 1639 179 28 0 chr15 32107254 32107539 -69272982 - AluJb SINE Alu -18 294 2 268 203 0 17 chr15 32108782 32108841 -69271680 - MER117 DNA MER1_type -106 91 34 209 325 64 69 chr15 32109083 32109271 -69271250 - MER5A DNA MER1_type 0 189 3 252 212 141 35 chr15 32109294 32109379 -69271142 + MIR SINE MIR 30 123 -139 419 267 180 7 chr15 32110331 32110481 -69270040 - MIR SINE MIR -56 206 31 464 325 32 37 chr15 32110932 32111120 -69269401 - MIR3 SINE MIR -5 203 17 348 279 98 8 chr15 32111437 32111559 -69268962 - L2 LINE L2 -1 3271 3139 223 159 0 23 chr15 32113869 32113913 -69266608 + L2 LINE L2 3210 3252 -20 200 162 14 54 chr15 32117469 32117543 -69262978 + (TA)n Simple_repeat Simple_repeat 1 71 0 312 27 0 0 chr15 32117700 32117737 -69262784 + (TA)n Simple_repeat Simple_repeat 1 37 0 1525 156 4 0 chr15 32117737 32117975 -69262546 - AluSp SINE Alu -4 309 71 1579 141 28 4 chr15 32118127 32118376 -69262145 - AluJb SINE Alu -57 255 1 329 186 9 106 chr15 32119495 32119608 -69260913 - L2 LINE L2 -620 2694 2593 195 222 93 0 chr15 32120550 32120604 -69259917 + MIR SINE MIR 20 78 -184 1164 144 5 10 chr15 32120848 32121056 -69259465 - MLT1B LTR MaLR -183 207 1 387 308 86 0 chr15 32121116 32121233 -69259288 - MIR SINE MIR -124 138 12 2157 107 38 41 chr15 32121910 32122275 -69258246 + THE1B LTR MaLR 1 364 0 670 160 0 0 chr15 32122415 32122515 -69258006 - AluJ/FLAM SINE Alu -212 100 1 368 299 43 17 chr15 32122515 32122632 -69257889 + MIR SINE MIR 93 212 -50 398 294 6 69 chr15 32123341 32123501 -69257020 + MIR SINE MIR 57 206 -56 321 191 257 9 chr15 32123651 32123756 -69256765 + FLAM_C SINE Alu 2 132 -1 633 143 19 0 chr15 32124082 32124187 -69256334 - AluSx SINE Alu -15 294 188 1016 107 0 0 chr15 32124188 32124319 -69256202 - AluSx SINE Alu -181 132 2 225 226 0 0 chr15 32124321 32124374 -69256147 + L1ME2 LINE L1 6103 6155 -9 233 302 217 39 chr15 32125821 32125950 -69254571 + L2 LINE L2 3121 3272 0 200 162 14 54 chr15 32127698 32127772 -69252749 + (TA)n Simple_repeat Simple_repeat 1 71 0 312 27 0 0 chr15 32127929 32127966 -69252555 + (TA)n Simple_repeat Simple_repeat 2 38 0 1913 80 4 0 chr15 32127966 32128204 -69252317 - AluSp SINE Alu -4 309 71 233 193 0 6 chr15 32128204 32128259 -69252262 - AluSp SINE Alu -262 38 1 23 33 0 0 chr15 32128504 32128534 -69251987 + AT_rich Low_complexity Low_complexity 1 30 0 396 59 0 0 chr15 32129994 32130002 -69250519 + (TG)n Simple_repeat Simple_repeat 1 59 0 396 59 0 0 chr15 32130002 32130053 -69250468 + (TG)n Simple_repeat Simple_repeat 2 52 0 670 233 277 5 chr15 32131238 32131440 -69249081 + MIR SINE MIR 1 257 -5 369 62 0 0 chr15 32132311 32132359 -69248162 + (CA)n Simple_repeat Simple_repeat 1 48 0 210 188 471 0 chr15 32135001 32135086 -69245435 + L2 LINE L2 3185 3309 -4 198 0 0 0 chr15 32135171 32135193 -69245328 + (T)n Simple_repeat Simple_repeat 1 22 0 2276 102 0 0 chr15 32135228 32135521 -69245000 - AluSx SINE Alu -19 293 1 830 225 18 0 chr15 32137354 32137523 -69242998 + FRAM SINE Alu 3 174 -2 3672 128 49 8 chr15 32137802 32138412 -69242109 - L1MA4A LINE L1 -7 6296 5662 246 146 18 73 chr15 32138495 32138550 -69241971 + L1MA6 LINE L1 5734 5785 -386 289 176 137 0 chr15 32138652 32138703 -69241818 + MER30 DNA MER1_type 173 230 0 678 195 7 7 chr15 32139028 32139177 -69241344 + L1MA6 LINE L1 5998 6146 -154 1583 108 16 12 chr15 32139950 32140208 -69240313 + L1MA4A LINE L1 6040 6298 -5 1307 143 0 0 chr15 32140395 32140604 -69239917 - L1PA13 LINE L1 -20 6143 5935 365 287 77 21 chr15 32140803 32140946 -69239575 - L2 LINE L2 -8 3305 3155 201 308 90 87 chr15 32142503 32142824 -69237697 + L2 LINE L2 2898 3219 -53 322 271 70 16 chr15 32142896 32143025 -69237496 + MIR SINE MIR 16 150 -71 1347 173 60 69 chr15 32143536 32143595 -69236926 - L1MB2 LINE L1 -1 6170 6112 2369 50 4 4 chr15 32143595 32143875 -69236646 - AluY SINE Alu -15 296 17 1347 173 60 69 chr15 32143875 32144162 -69236359 - L1MB2 LINE L1 -59 6112 5827 399 287 216 6 chr15 32144387 32144568 -69235953 - MER102b DNA MER1_type -51 290 72 606 339 164 17 chr15 32144579 32145048 -69235473 - L3 LINE CR1 -107 1470 933 822 241 0 91 chr15 32145055 32145275 -69235246 + MIR SINE MIR 40 239 -23 225 292 62 88 chr15 32145501 32145614 -69234907 - L2 LINE L2 -26 3246 3137 2121 120 13 7 chr15 32145722 32146022 -69234499 - AluSx SINE Alu -10 302 1 216 0 0 0 chr15 32151084 32151108 -69229413 + (CA)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr15 32151270 32151292 -69229229 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr15 32154335 32154363 -69226158 + AT_rich Low_complexity Low_complexity 1 28 0 443 305 30 38 chr15 32154621 32154752 -69225769 + L2 LINE L2 3143 3272 0 183 302 19 0 chr15 32155665 32155718 -69224803 - L2 LINE L2 -13 3300 3247 246 62 0 0 chr15 32156420 32156452 -69224069 + (T)n Simple_repeat Simple_repeat 1 32 0 25 51 0 0 chr15 32156885 32156924 -69223597 + AT_rich Low_complexity Low_complexity 1 39 0 467 279 161 6 chr15 32159645 32159806 -69220715 - MIR3 SINE MIR -3 205 20 369 242 224 24 chr15 32160283 32160448 -69220073 + MIR SINE MIR 2 199 -63 22 0 0 0 chr15 32160511 32160533 -69219988 + AT_rich Low_complexity Low_complexity 1 22 0 35 0 0 0 chr15 32161641 32161676 -69218845 + AT_rich Low_complexity Low_complexity 1 35 0 2188 119 0 0 chr15 32161720 32162014 -69218507 + AluSx SINE Alu 1 294 -18 367 218 97 32 chr15 32163240 32163364 -69217157 + MLT1L LTR MaLR 378 613 -2 612 288 74 26 chr15 32163971 32164200 -69216321 + MIR SINE MIR 20 259 -3 391 311 17 17 chr15 32164169 32164288 -69216233 - MIR SINE MIR -80 182 64 * 416 316 78 48 chr15 32164355 32164750 -69215771 + MLT1I LTR MaLR 1 407 -2 21 0 0 0 chr15 32165087 32165108 -69215413 + AT_rich Low_complexity Low_complexity 1 21 0 3875 206 29 15 chr15 32165247 32166219 -69214302 + L1ME1 LINE L1 5177 6162 -4 1117 270 49 80 chr15 32166894 32167247 -69213274 + MLT1L LTR MaLR 82 413 -202 1425 203 7 3 chr15 32167247 32167533 -69212988 + AluJb SINE Alu 1 287 -25 1117 270 49 80 chr15 32167533 32167730 -69212791 + MLT1L LTR MaLR 413 615 0 23 33 0 0 chr15 32167841 32167871 -69212650 + AT_rich Low_complexity Low_complexity 1 30 0 615 160 59 0 chr15 32167878 32167997 -69212524 + L1MC3 LINE L1 7660 7785 0 282 264 50 30 chr15 32168173 32168283 -69212238 - MIR SINE MIR -65 143 43 22 0 0 0 chr15 32168870 32168892 -69211629 + AT_rich Low_complexity Low_complexity 1 22 0 263 215 231 8 chr15 32169170 32169291 -69211230 + Charlie7 DNA MER1_type 1 148 -2464 1321 185 0 5 chr15 32169880 32170091 -69210430 + AluJo SINE Alu 1 210 -102 213 94 0 0 chr15 32170111 32170143 -69210378 + (A)n Simple_repeat Simple_repeat 1 32 0 1420 127 164 44 chr15 32170158 32170178 -69210343 - MER47A DNA MER2_type -2015 308 292 2141 98 25 0 chr15 32170178 32170463 -69210058 - AluSc SINE Alu -17 292 1 1420 127 164 44 chr15 32170463 32170717 -69209804 - MER47A DNA MER2_type -2031 292 1 896 258 62 82 chr15 32170766 32171169 -69209352 - L2 LINE L2 -704 2610 2216 2385 88 0 0 chr15 32171266 32171563 -69208958 - AluSg1 SINE Alu -12 297 1 1237 211 40 16 chr15 32174346 32174687 -69205834 - MLT1C LTR MaLR -3 387 46 1229 201 29 69 chr15 32175125 32175473 -69205048 - MER46C DNA MER2_type 0 338 5 3346 213 35 21 chr15 32176204 32177478 -69203043 + L1ME LINE L1 4475 5780 -386 2142 198 61 11 chr15 32177824 32178269 -69202252 - MLT1C LTR MaLR 0 467 1 397 261 63 42 chr15 32178395 32178537 -69201984 - L2 LINE L2 0 3313 3169 223 253 11 92 chr15 32179574 32179661 -69200860 - L2 LINE L2 -984 2330 2251 942 129 105 29 chr15 32179864 32180035 -69200486 + AluJo SINE Alu 117 300 -12 912 266 91 33 chr15 32180380 32180711 -69199810 - MARNA DNA Mariner -9 577 228 343 155 124 36 chr15 32181383 32181616 -69198905 + AluJo SINE Alu 3 301 -1 184 298 0 0 chr15 32184982 32185029 -69195492 - L2 LINE L2 -219 3053 3007 2255 223 106 14 chr15 32186065 32186871 -69193650 - L1MC4 LINE L1 -1 8041 7162 1283 124 4 100 chr15 32186872 32187041 -69193480 - AluJb SINE Alu 0 312 128 2180 116 0 10 chr15 32187041 32187342 -69193179 - AluSx SINE Alu -14 298 1 1283 124 4 100 chr15 32187342 32187357 -69193164 - AluJb SINE Alu -184 128 113 207 0 0 0 chr15 32187357 32187380 -69193141 + (TG)n Simple_repeat Simple_repeat 2 24 0 1283 124 4 100 chr15 32187380 32187444 -69193077 - AluJb SINE Alu -199 113 87 918 159 137 70 chr15 32187448 32187763 -69192758 - L1MC4 LINE L1 -868 7174 6839 460 299 61 0 chr15 32187773 32187920 -69192601 - MIR SINE MIR -44 218 63 229 301 0 27 chr15 32188442 32188515 -69192006 + L2 LINE L2 969 1039 -2275 2305 98 7 0 chr15 32188699 32188995 -69191526 + AluSg SINE Alu 1 298 -12 21 0 0 0 chr15 32192812 32192833 -69187688 + AT_rich Low_complexity Low_complexity 1 21 0 568 278 95 6 chr15 32193168 32193337 -69187184 + MIR SINE MIR 27 210 -52 209 167 0 48 chr15 32193756 32193798 -69186723 + L2 LINE L2 3192 3231 -82 478 225 132 8 chr15 32194399 32194528 -69185993 - MER5B DNA MER1_type -3 175 31 2193 137 23 8 chr15 32195189 32195576 -69184945 - MER57A LTR ERV1 -10 393 1 27 49 0 0 chr15 32195771 32195812 -69184709 + AT_rich Low_complexity Low_complexity 1 41 0 2547 41 3 22 chr15 32196053 32196370 -69184151 - AluY SINE Alu 0 311 1 832 289 14 10 chr15 32198509 32198800 -69181721 + L1ME1 LINE L1 399 690 -5706 * 3027 218 49 26 chr15 32198791 32199249 -69181272 + L1ME1 LINE L1 4745 5191 -1044 1667 191 10 7 chr15 32199249 32199543 -69180978 - AluJb SINE Alu -16 296 2 3027 218 49 26 chr15 32199543 32200537 -69179984 + L1ME1 LINE L1 5191 6230 -5 231 231 183 39 chr15 32200593 32200697 -69179824 + LTR33 LTR ERVL 6 124 -397 410 0 20 0 chr15 32200969 32201019 -69179502 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 243 258 25 50 chr15 32201189 32201309 -69179212 + L1ME3 LINE L1 2276 2392 -3823 1747 144 0 8 chr15 32201372 32201636 -69178885 + AluSq SINE Alu 1 262 -51 306 180 0 0 chr15 32201640 32201701 -69178820 + GA-rich Low_complexity Low_complexity 2 62 0 947 218 18 32 chr15 32201728 32201948 -69178573 + U3 snRNA snRNA 1 217 0 341 304 45 5 chr15 32201975 32202176 -69178345 + L1ME3 LINE L1 2487 2695 -3520 2274 255 24 16 chr15 32202343 32202606 -69177915 + L1ME3 LINE L1 5402 5662 -569 1573 162 86 19 chr15 32202606 32202921 -69177600 + MER44D DNA MER2_type 4 609 0 2274 255 24 16 chr15 32202921 32203332 -69177189 + L1ME3 LINE L1 5662 6081 -150 1628 142 10 26 chr15 32203377 32203680 -69176841 - L1MB1 LINE L1 -7 6161 5864 1982 144 0 0 chr15 32203680 32204014 -69176507 + L1MB1 LINE L1 5543 5876 -313 227 256 12 12 chr15 32204110 32204192 -69176329 + L1ME3 LINE L1 6149 6230 -1 425 314 51 4 chr15 32204337 32204573 -69175948 + L1MEc LINE L1 3702 3948 -2267 1575 290 62 27 chr15 32204578 32205570 -69174951 + L1MEc LINE L1 390 1415 -4981 297 120 0 0 chr15 32205641 32205691 -69174830 + L1ME1 LINE L1 5666 5715 -449 235 96 39 39 chr15 32205692 32205744 -69174777 + T-rich Low_complexity Low_complexity 4 55 0 721 98 32 0 chr15 32205762 32205885 -69174636 + C-rich Low_complexity Low_complexity 2 128 0 1662 194 3 13 chr15 32205885 32206199 -69174322 - AluJb SINE Alu -1 311 1 1336 213 84 29 chr15 32206199 32206649 -69173872 + L1ME1 LINE L1 5700 6331 -3 252 255 10 10 chr15 32206762 32206860 -69173661 + L1MEc LINE L1 4558 4655 -1560 554 152 0 22 chr15 32207227 32207319 -69173202 - AluJb SINE Alu -19 293 204 639 243 80 63 chr15 32210082 32210242 -69170279 - MIR SINE MIR 0 262 95 2211 84 42 0 chr15 32210242 32210528 -69169993 + AluSq SINE Alu 1 298 -15 639 243 80 63 chr15 32210528 32210606 -69169915 - MIR SINE MIR -167 95 20 872 324 108 38 chr15 32211113 32211855 -69168666 + L2 LINE L2 1167 1960 -1354 661 325 109 65 chr15 32211894 32212912 -69167609 - L2 LINE L2 -53 3219 2148 373 296 66 101 chr15 32213030 32213347 -69167174 + L2 LINE L2 2934 3239 -33 484 239 239 12 chr15 32213406 32213572 -69166949 - MIR3 SINE MIR 0 208 12 268 293 10 50 chr15 32213874 32214062 -69166459 - MIR SINE MIR 0 262 30 26 0 0 0 chr15 32214792 32214818 -69165703 + AT_rich Low_complexity Low_complexity 1 26 0 303 329 43 37 chr15 32215840 32216001 -69164520 + MIR3 SINE MIR 36 197 -11 195 162 0 0 chr15 32217177 32217214 -69163307 + A-rich Low_complexity Low_complexity 3 39 0 372 164 0 0 chr15 32218728 32218795 -69161726 + A-rich Low_complexity Low_complexity 1 67 0 186 73 73 0 chr15 32219322 32219363 -69161158 + GA-rich Low_complexity Low_complexity 1 44 0 345 62 0 0 chr15 32220146 32220194 -69160327 + (TG)n Simple_repeat Simple_repeat 1 48 0 197 176 0 39 chr15 32221060 32221111 -69159410 + GA-rich Low_complexity Low_complexity 6 54 0 260 243 14 0 chr15 32223470 32223540 -69156981 + (TA)n Simple_repeat Simple_repeat 2 72 0 396 0 0 0 chr15 32224592 32224636 -69155885 + (TG)n Simple_repeat Simple_repeat 2 45 0 186 43 0 0 chr15 32225056 32225079 -69155442 + (TTA)n Simple_repeat Simple_repeat 2 24 0 24 53 0 0 chr15 32229819 32229857 -69150664 + GC_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr15 32231895 32231918 -69148603 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 32236067 32236089 -69144432 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 32239913 32239935 -69140586 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr15 32240884 32240910 -69139611 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr15 32243091 32243113 -69137408 + AT_rich Low_complexity Low_complexity 1 22 0 633 240 80 25 chr15 32243386 32243586 -69136935 + MIR SINE MIR 46 256 -6 370 216 216 34 chr15 32243910 32244058 -69136463 + MER5A DNA MER1_type 15 189 0 21 0 0 0 chr15 32244221 32244242 -69136279 + AT_rich Low_complexity Low_complexity 1 21 0 31 44 0 0 chr15 32244385 32244430 -69136091 + AT_rich Low_complexity Low_complexity 1 45 0 238 246 0 18 chr15 32246219 32246276 -69134245 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 211 189 0 0 chr15 32246374 32246411 -69134110 + (CA)n Simple_repeat Simple_repeat 2 38 0 186 43 0 0 chr15 32247859 32247882 -69132639 + (A)n Simple_repeat Simple_repeat 1 23 0 2027 63 78 15 chr15 32249884 32250192 -69130329 + AluSp SINE Alu 1 325 0 289 343 123 37 chr15 32250309 32250609 -69129912 + L2 LINE L2 2945 3270 -2 1460 167 0 30 chr15 32251164 32251433 -69129088 + AluJb SINE Alu 34 294 -18 252 311 0 50 chr15 32251538 32251657 -69128864 + MER103 DNA DNA 9 121 -45 21 36 0 0 chr15 32251749 32251777 -69128744 + AT_rich Low_complexity Low_complexity 1 28 0 2401 66 3 3 chr15 32251976 32252277 -69128244 + AluSg SINE Alu 2 302 -8 195 42 0 0 chr15 32252481 32252505 -69128016 + (TG)n Simple_repeat Simple_repeat 2 25 0 * 254 140 0 20 chr15 32252500 32252550 -69127971 + (TA)n Simple_repeat Simple_repeat 1 49 0 225 197 0 66 chr15 32252654 32252730 -69127791 + GA-rich Low_complexity Low_complexity 3 73 0 204 40 0 0 chr15 32254042 32254067 -69126454 + (A)n Simple_repeat Simple_repeat 1 25 0 208 327 0 0 chr15 32254390 32254442 -69126079 + L2 LINE L2 3205 3256 -16 30 0 0 0 chr15 32254485 32254515 -69126006 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr15 32254797 32254818 -69125703 + AT_rich Low_complexity Low_complexity 1 21 0 2276 102 0 7 chr15 32257357 32257661 -69122860 + AluY SINE Alu 1 302 -9 1880 166 0 3 chr15 32257661 32257944 -69122577 - AluJo SINE Alu -30 282 1 608 294 75 15 chr15 32258002 32258203 -69122318 - MIR SINE MIR -1 261 49 201 279 0 0 chr15 32259233 32259276 -69121245 - L2 LINE L2 -9 3304 3262 532 243 40 62 chr15 32259487 32259664 -69120857 + MIR SINE MIR 48 220 -42 322 235 182 11 chr15 32260035 32260180 -69120341 + MIR SINE MIR 12 188 -62 520 152 0 33 chr15 32260187 32260279 -69120242 + AluJ/FLAM SINE Alu 1 89 -223 * 759 194 0 7 chr15 32260270 32260414 -69120107 + AluJo/FRAM SINE Alu 162 304 -8 2267 101 7 0 chr15 32260508 32260806 -69119715 + AluSp SINE Alu 1 300 -13 387 0 0 0 chr15 32261330 32261373 -69119148 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2236 68 11 0 chr15 32261380 32261658 -69118863 - AluSp SINE Alu -32 281 1 264 30 0 0 chr15 32262196 32262229 -69118292 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 269 310 73 30 chr15 32263357 32263557 -69116964 + MIR SINE MIR 16 221 -41 1975 114 29 26 chr15 32263819 32264127 -69116394 - AluSg SINE Alu -1 309 1 249 238 0 0 chr15 32266337 32266417 -69114104 + A-rich Low_complexity Low_complexity 1 80 0 24 53 0 0 chr15 32269099 32269137 -69111384 + AT_rich Low_complexity Low_complexity 1 38 0 290 357 137 6 chr15 32269577 32269745 -69110776 - MIR SINE MIR -71 191 2 217 259 0 0 chr15 32270125 32270179 -69110342 + A-rich Low_complexity Low_complexity 1 54 0 327 284 37 0 chr15 32270264 32270345 -69110176 + L2 LINE L2 3137 3220 -52 284 250 73 52 chr15 32270818 32270914 -69109607 + L2 LINE L2 3150 3247 -25 2250 100 10 10 chr15 32271132 32271432 -69109089 + AluSx SINE Alu 1 300 -12 218 309 0 0 chr15 32273089 32273144 -69107377 + (CAGA)n Simple_repeat Simple_repeat 4 58 0 244 310 60 10 chr15 32273469 32273569 -69106952 + MER91C DNA MER1_type 36 140 0 21 36 0 0 chr15 32273653 32273681 -69106840 + AT_rich Low_complexity Low_complexity 1 28 0 237 233 17 0 chr15 32273860 32273920 -69106601 + (TG)n Simple_repeat Simple_repeat 2 62 0 201 74 0 0 chr15 32276388 32276415 -69104106 + (T)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr15 32277004 32277026 -69103495 + AT_rich Low_complexity Low_complexity 1 22 0 329 327 19 9 chr15 32277282 32277389 -69103132 - L2 LINE L2 -3 3269 3162 1884 71 0 4 chr15 32277400 32277638 -69102883 - AluY SINE Alu -6 305 69 615 246 102 5 chr15 32279930 32280117 -69100404 - MIR3 SINE MIR 0 208 4 22 56 0 0 chr15 32284237 32284273 -69096248 + AT_rich Low_complexity Low_complexity 1 36 0 718 298 31 9 chr15 32287879 32288104 -69092417 - MIR SINE MIR -30 232 3 278 300 12 0 chr15 32291260 32291340 -69089181 + GA-rich Low_complexity Low_complexity 2 82 0 417 39 0 0 chr15 32293821 32293872 -69086649 + (TG)n Simple_repeat Simple_repeat 2 52 0 273 140 18 18 chr15 32295336 32295393 -69085128 + L1P5 LINE L1 5724 5780 -376 331 258 125 8 chr15 32295418 32295538 -69084983 + L1MC4a LINE L1 5862 5995 -1813 27 29 0 0 chr15 32295617 32295651 -69084870 + AT_rich Low_complexity Low_complexity 1 34 0 209 125 16 47 chr15 32295651 32295715 -69084806 + (TTAAA)n Simple_repeat Simple_repeat 3 64 0 2210 51 25 63 chr15 32297109 32297424 -69083097 + AluY SINE Alu 1 303 -8 261 328 35 43 chr15 32297460 32297576 -69082945 - MIR SINE MIR -62 146 32 872 301 93 4 chr15 32297744 32298013 -69082508 + MLT1K LTR MaLR 226 518 -70 203 246 0 14 chr15 32298102 32298171 -69082350 + GA-rich Low_complexity Low_complexity 2 69 0 287 345 35 41 chr15 32298853 32298998 -69081523 + L2 LINE L2 3129 3272 0 366 343 0 0 chr15 32300245 32300347 -69080174 - MIR3 SINE MIR -15 193 92 451 340 68 31 chr15 32300519 32300710 -69079811 + L2 LINE L2 3074 3271 -1 1496 178 86 29 chr15 32303547 32303862 -69076659 + MER2 DNA MER2_type 13 345 0 22 0 0 0 chr15 32303927 32303949 -69076572 + AT_rich Low_complexity Low_complexity 1 22 0 2228 92 0 16 chr15 32304306 32304609 -69075912 + AluSx SINE Alu 1 298 -14 277 274 9 62 chr15 32305445 32305558 -69074963 + L2 LINE L2 3207 3313 0 707 301 26 5 chr15 32307640 32307833 -69072688 + MIR SINE MIR 8 204 -58 477 293 134 16 chr15 32307856 32308102 -69072419 - L2 LINE L2 -51 3262 2988 210 243 29 57 chr15 32308216 32308286 -69072235 + MIR SINE MIR 192 259 -3 335 270 22 34 chr15 32309215 32309402 -69071119 + MLT1I LTR MaLR 270 409 0 2559 37 0 3 chr15 32311335 32311631 -69068890 + AluY SINE Alu 1 295 -16 22 35 0 0 chr15 32312133 32312162 -69068359 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr15 32312751 32312778 -69067743 + (A)n Simple_repeat Simple_repeat 1 27 0 282 95 0 0 chr15 32312934 32312976 -69067545 + (A)n Simple_repeat Simple_repeat 1 42 0 409 356 27 5 chr15 32313691 32313879 -69066642 + L2 LINE L2 2622 2813 -501 687 68 0 0 chr15 32313879 32313967 -69066554 - AluS SINE Alu -224 88 1 452 198 55 0 chr15 32314493 32314584 -69065937 + MIR SINE MIR 97 192 -70 198 219 0 0 chr15 32316910 32316942 -69063579 - L2 LINE L2 -19 3253 3222 255 229 16 0 chr15 32316986 32317047 -69063474 - MIR SINE MIR -149 113 52 1422 114 32 4 chr15 32317175 32317421 -69063100 + L1MA8 LINE L1 6039 6291 0 2379 73 0 3 chr15 32317495 32317795 -69062726 - AluSg SINE Alu -11 299 1 195 130 78 0 chr15 32317868 32317945 -69062576 + (TA)n Simple_repeat Simple_repeat 1 83 0 2204 94 0 7 chr15 32318253 32318564 -69061957 + AluSp SINE Alu 1 309 0 299 322 143 35 chr15 32318818 32319048 -69061473 + MIR SINE MIR 7 261 -1 501 251 219 27 chr15 32319636 32319855 -69060666 - MIR SINE MIR 0 262 2 713 275 105 21 chr15 32319944 32320421 -69060100 - L1ME4a LINE L1 -8 6113 5597 1969 173 11 6 chr15 32320447 32320800 -69059721 + MER46B DNA MER2_type 1 230 -6 322 290 129 1 chr15 32320807 32321002 -69059519 - L1ME4a LINE L1 -620 5550 5332 243 118 71 0 chr15 32321094 32321179 -69059342 + (TA)n Simple_repeat Simple_repeat 1 91 0 26 50 0 0 chr15 32321274 32321314 -69059207 + AT_rich Low_complexity Low_complexity 1 40 0 361 359 76 29 chr15 32321502 32321719 -69058802 - L1ME4a LINE L1 -832 5314 5076 2139 91 94 21 chr15 32321719 32322058 -69058463 - THE1B LTR MaLR 0 364 1 361 359 76 29 chr15 32322058 32322155 -69058366 - L1ME4a LINE L1 -1070 5076 4985 446 258 131 73 chr15 32322493 32322904 -69057617 - L1ME4a LINE L1 -1631 4515 4081 3006 118 66 23 chr15 32323018 32323047 -69057474 - L1MA9 LINE L1 -155 6157 6131 2689 191 26 48 chr15 32323047 32323613 -69056908 + MLT2B3 LTR ERVL 1 554 0 3006 118 66 23 chr15 32323613 32324100 -69056421 - L1MA9 LINE L1 -181 6131 5619 2828 10 0 3 chr15 32324271 32324583 -69055938 - AluYa5 SINE Alu 0 311 1 2670 156 62 6 chr15 32325380 32325913 -69054608 + L1M1 LINE L1 2165 2727 -4838 612 211 0 0 chr15 32327437 32327551 -69052970 - FLAM_C SINE Alu -18 115 2 301 290 174 13 chr15 32327584 32327739 -69052782 - L3 LINE CR1 -644 933 754 337 300 67 33 chr15 32327783 32327963 -69052558 - MIR SINE MIR -40 222 37 362 261 68 0 chr15 32328248 32328336 -69052185 - L2 LINE L2 -2 3311 3218 198 291 139 13 chr15 32328344 32328423 -69052098 - L3 LINE CR1 -1188 389 301 318 278 139 103 chr15 32328804 32329027 -69051494 - MIR SINE MIR -12 250 20 1508 172 28 28 chr15 32330453 32330744 -69049777 + AluJo SINE Alu 4 294 -18 498 271 13 26 chr15 32331116 32331271 -69049250 - MIR SINE MIR -37 225 73 262 247 113 31 chr15 32332292 32332389 -69048132 - MIR SINE MIR -118 144 40 9409 177 50 9 chr15 32333192 32335121 -69045400 - L1 LINE L1 -972 5174 3167 216 200 0 0 chr15 32335255 32335295 -69045226 + CT-rich Low_complexity Low_complexity 2 41 0 1117 257 217 0 chr15 32336324 32336830 -69043691 + LTR50 LTR ERVL 9 624 -171 366 159 0 0 chr15 32339907 32339976 -69040545 + A-rich Low_complexity Low_complexity 1 69 0 228 54 89 18 chr15 32340144 32340200 -69040321 + LTR66 LTR ERVL 380 439 -171 308 234 0 0 chr15 32340226 32340290 -69040231 - L1MC4 LINE L1 -1339 6703 6640 182 277 0 21 chr15 32341274 32341321 -69039200 + MIR SINE MIR 27 72 -136 683 336 33 35 chr15 32341606 32341676 -69038845 - L3 LINE CR1 -5 1572 1503 2172 108 23 7 chr15 32341676 32341982 -69038539 - AluY SINE Alu 0 311 1 683 336 33 35 chr15 32341982 32342307 -69038214 - L3 LINE CR1 -74 1503 1178 338 181 41 0 chr15 32342528 32342607 -69037914 + LTR50 LTR ERVL 443 795 0 1967 171 0 0 chr15 32342825 32343130 -69037391 + AluJb SINE Alu 1 305 -7 852 161 70 66 chr15 32343710 32343952 -69036569 + L1MA9 LINE L1 6026 6268 -44 195 230 97 88 chr15 32344907 32345020 -69035501 - MIR3 SINE MIR -87 121 8 2427 49 0 3 chr15 32345632 32345944 -69034577 - AluY SINE Alu 0 311 1 335 181 36 0 chr15 32346344 32346427 -69034094 - L1MB8 LINE L1 0 6178 6093 996 190 29 9 chr15 32347539 32347844 -69032677 + MLT1B LTR MaLR 1 390 0 24 0 0 0 chr15 32348384 32348408 -69032113 + AT_rich Low_complexity Low_complexity 1 24 0 502 276 88 54 chr15 32348522 32348909 -69031612 - L1ME4a LINE L1 -180 5941 5542 1100 156 0 60 chr15 32349028 32349227 -69031294 - AluJo SINE Alu -125 187 1 591 261 42 65 chr15 32349228 32349321 -69031200 - L1ME4a LINE L1 -745 5401 5307 2125 87 3 58 chr15 32349321 32349633 -69030888 - AluSg SINE Alu -15 295 1 591 261 42 65 chr15 32349633 32349849 -69030672 - L1ME4a LINE L1 -839 5307 5099 442 299 91 36 chr15 32349938 32350221 -69030300 - L1ME4a LINE L1 -1251 4895 4600 2082 87 66 0 chr15 32350590 32350876 -69029645 - AluSq SINE Alu -8 305 1 276 325 33 33 chr15 32351972 32352092 -69028429 - MIR SINE MIR -73 135 16 21 36 0 0 chr15 32352432 32352460 -69028061 + AT_rich Low_complexity Low_complexity 1 28 0 2140 104 12 12 chr15 32354442 32354770 -69025751 - L1MC1 LINE L1 0 6333 6006 230 299 47 28 chr15 32356502 32356609 -69023912 - MIR SINE MIR -71 191 83 754 165 0 0 chr15 32356662 32356783 -69023738 + FLAM_C SINE Alu 1 121 -22 1756 148 0 0 chr15 32357160 32357417 -69023104 - AluSx SINE Alu -55 257 1 1110 176 92 40 chr15 32357535 32357785 -69022736 - AluJo SINE Alu -49 263 1 548 256 57 17 chr15 32357927 32358103 -69022418 - MIR SINE MIR -14 248 66 227 208 21 0 chr15 32358213 32358261 -69022260 + CT-rich Low_complexity Low_complexity 2 50 0 243 0 0 0 chr15 32358267 32358294 -69022227 + (TG)n Simple_repeat Simple_repeat 2 28 0 405 0 0 0 chr15 32358661 32358706 -69021815 + (TG)n Simple_repeat Simple_repeat 2 46 0 1338 184 4 8 chr15 32358708 32358942 -69021579 - AluJo SINE Alu -36 276 44 186 43 0 0 chr15 32359381 32359404 -69021117 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 245 331 56 35 chr15 32361062 32361204 -69019317 - MIR3 SINE MIR -29 179 35 388 239 180 42 chr15 32361673 32361840 -69018681 + MIR3 SINE MIR 2 191 -17 228 86 0 0 chr15 32365290 32365325 -69015196 + (TG)n Simple_repeat Simple_repeat 2 36 0 395 294 19 9 chr15 32366004 32366149 -69014372 + MER5A DNA MER1_type 26 178 0 620 231 84 0 chr15 32366400 32366543 -69013978 + MER5A DNA MER1_type 35 189 0 1479 184 96 0 chr15 32367114 32367386 -69013135 + AluJo SINE Alu 1 298 -14 344 271 70 8 chr15 32367640 32367769 -69012752 - MIR SINE MIR -123 139 3 2370 82 0 13 chr15 32368900 32369205 -69011316 - AluSc SINE Alu -8 301 1 423 220 120 0 chr15 32369291 32369391 -69011130 - MIR SINE MIR -70 192 81 273 374 70 42 chr15 32369758 32370116 -69010405 + L2 LINE L2 2898 3265 -7 201 74 0 0 chr15 32370698 32370725 -69009796 + (GAA)n Simple_repeat Simple_repeat 2 28 0 258 81 0 0 chr15 32370987 32371024 -69009497 + (TG)n Simple_repeat Simple_repeat 1 37 0 354 216 10 62 chr15 32372671 32372768 -69007753 + MIR SINE MIR 92 183 -79 212 88 70 0 chr15 32372837 32372894 -69007627 + (TA)n Simple_repeat Simple_repeat 2 62 0 2206 112 0 3 chr15 32372895 32373190 -69007331 - AluSq SINE Alu -19 294 1 2432 101 0 0 chr15 32374563 32374870 -69005651 + AluSg SINE Alu 3 309 -1 1542 176 17 3 chr15 32375800 32376090 -69004431 + AluJb SINE Alu 1 294 -18 2345 75 0 0 chr15 32376092 32376402 -69004119 + AluY SINE Alu 1 310 0 2640 52 0 0 chr15 32377164 32377471 -69003050 - AluY SINE Alu -4 307 1 554 269 0 0 chr15 32379081 32379231 -69001290 - FLAM_A SINE Alu 0 133 1 331 222 56 79 chr15 32379379 32379505 -69001016 - MIR SINE MIR -74 188 66 1624 148 32 14 chr15 32380549 32380832 -68999689 + AluJb SINE Alu 5 292 -20 832 112 6 43 chr15 32381412 32381573 -68998948 - L1MA5 LINE L1 -5 6295 6141 183 250 0 21 chr15 32381867 32381915 -68998606 + MIR3 SINE MIR 159 205 -3 2131 157 5 22 chr15 32382363 32382732 -68997789 - MLT1A1 LTR MaLR -2 363 1 219 36 0 0 chr15 32383035 32383063 -68997458 + (TTG)n Simple_repeat Simple_repeat 2 29 0 22 35 0 0 chr15 32383471 32383500 -68997021 + AT_rich Low_complexity Low_complexity 1 29 0 229 304 58 72 chr15 32383819 32383957 -68996564 - L2 LINE L2 0 3272 3137 29 0 0 0 chr15 32384644 32384673 -68995848 + AT_rich Low_complexity Low_complexity 1 29 0 268 299 113 62 chr15 32384741 32385015 -68995506 - L2 LINE L2 -700 2614 2327 180 0 0 0 chr15 32385619 32385639 -68994882 + (TA)n Simple_repeat Simple_repeat 2 21 0 939 157 12 6 chr15 32388065 32388237 -68992284 + L1MB8 LINE L1 5997 6169 -9 1955 142 3 3 chr15 32388255 32388564 -68991957 - AluSx SINE Alu -3 309 1 651 129 0 10 chr15 32389607 32389708 -68990813 - HY3 scRNA scRNA -1 100 1 411 273 39 16 chr15 32389708 32389836 -68990685 + MIR SINE MIR 61 191 -71 181 116 47 70 chr15 32389944 32389987 -68990534 + MIR SINE MIR 218 259 -3 1718 205 32 20 chr15 32390010 32390410 -68990111 + L1ME1 LINE L1 5757 6161 -5 469 287 83 9 chr15 32391044 32391266 -68989255 - MIR3 SINE MIR -6 256 9 379 138 31 0 chr15 32392856 32392921 -68987600 + MER116 DNA Mariner 1 67 -13 1545 189 18 7 chr15 32393189 32393495 -68987026 - AluJb SINE Alu 0 310 2 652 235 107 11 chr15 32393691 32393878 -68986643 - MIR SINE MIR 0 262 58 395 276 32 8 chr15 32394044 32394167 -68986354 + L2 LINE L2 3187 3312 -1 207 0 0 0 chr15 32396428 32396451 -68984070 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr15 32398401 32398424 -68982097 + AT_rich Low_complexity Low_complexity 1 23 0 326 246 0 0 chr15 32398433 32398494 -68982027 + AluS SINE Alu 1 61 -242 38 39 0 0 chr15 32400299 32400351 -68980170 + AT_rich Low_complexity Low_complexity 1 52 0 703 213 0 0 chr15 32401580 32401707 -68978814 - FLAM_A SINE Alu -10 132 6 392 276 186 30 chr15 32401767 32401966 -68978555 + MIR SINE MIR 15 244 -18 214 260 78 0 chr15 32404831 32404908 -68975613 + MIR SINE MIR 67 149 -113 1676 173 14 14 chr15 32405164 32405459 -68975062 - AluJo SINE Alu -17 295 1 1565 130 0 0 chr15 32405471 32405687 -68974834 - AluJb SINE Alu -11 301 86 23 0 0 0 chr15 32405974 32405997 -68974524 + AT_rich Low_complexity Low_complexity 1 23 0 618 310 50 21 chr15 32406357 32406596 -68973925 - MIR SINE MIR -11 251 6 2354 75 10 0 chr15 32457699 32457994 -68922527 - AluY SINE Alu -13 298 1 321 191 29 15 chr15 32458084 32458152 -68922369 + MER94 DNA DNA 65 133 -1 413 179 64 0 chr15 32458180 32458258 -68922263 - MER45A DNA AcHobo 0 178 96 634 82 12 0 chr15 32458263 32458348 -68922173 + L1PA8A LINE L1 5434 5519 -612 4090 307 78 16 chr15 32458461 32460272 -68920249 + HERV16 LTR ERVL 1461 3491 -2046 2261 99 30 0 chr15 32460272 32460575 -68919946 + AluSx SINE Alu 1 312 0 4090 307 78 16 chr15 32460575 32460732 -68919789 + HERV16 LTR ERVL 3491 3637 -1900 613 364 42 32 chr15 32460761 32461355 -68919166 + HERV16 LTR ERVL 3723 4322 -1163 1170 187 103 0 chr15 32461379 32461593 -68918928 + AluSx SINE Alu 1 236 -76 5183 235 60 14 chr15 32461697 32463217 -68917304 - L1M4 LINE L1 -2057 4089 2499 1856 210 5 11 chr15 32463723 32464090 -68916431 - MLT1A1 LTR MaLR 0 365 1 21 89 0 0 chr15 32465056 32465112 -68915409 + AT_rich Low_complexity Low_complexity 1 56 0 23 33 0 0 chr15 32465416 32465446 -68915075 + AT_rich Low_complexity Low_complexity 1 30 0 221 239 30 0 chr15 32466805 32466872 -68913649 + A-rich Low_complexity Low_complexity 5 73 0 9566 89 13 32 chr15 32467598 32469014 -68911507 + HERVH LTR ERV1 1608 2995 -4718 5702 92 21 2 chr15 32468994 32469792 -68910729 + HERVH LTR ERV1 3140 3952 -3761 * 3944 113 0 0 chr15 32469790 32470322 -68910199 + HERVH LTR ERV1 4618 5149 -2564 * 1455 125 19 0 chr15 32470323 32470539 -68909982 + HERVH LTR ERV1 5600 5819 -1894 2525 83 53 13 chr15 32470539 32470914 -68909607 + HERVH LTR ERV1 7324 7713 0 2403 82 125 5 chr15 32470914 32471282 -68909239 + LTR7 LTR ERV1 1 412 -38 315 0 0 0 chr15 32471282 32471317 -68909204 + (A)n Simple_repeat Simple_repeat 1 35 0 350 229 55 0 chr15 32471384 32471493 -68909028 + L1MA9 LINE L1 6159 6273 -39 198 0 0 0 chr15 32473043 32473065 -68907456 + (A)n Simple_repeat Simple_repeat 1 22 0 244 295 0 26 chr15 32476312 32476390 -68904131 + G-rich Low_complexity Low_complexity 3 78 0 533 158 16 16 chr15 32476401 32476528 -68903993 + GA-rich Low_complexity Low_complexity 2 128 0 226 130 0 56 chr15 32477082 32477136 -68903385 + (CGG)n Simple_repeat Simple_repeat 2 52 0 225 132 0 0 chr15 32477343 32477381 -68903140 + (CACG)n Simple_repeat Simple_repeat 1 38 0 369 136 0 0 chr15 32477779 32477845 -68902676 + (TCC)n Simple_repeat Simple_repeat 1 66 0 249 159 0 0 chr15 32477967 32478011 -68902510 + A-rich Low_complexity Low_complexity 1 44 0 315 130 0 0 chr15 32478512 32478566 -68901955 + (TG)n Simple_repeat Simple_repeat 2 55 0 226 250 0 18 chr15 32478582 32478638 -68901883 + GA-rich Low_complexity Low_complexity 2 56 0 333 0 0 0 chr15 32479120 32479157 -68901364 + (TG)n Simple_repeat Simple_repeat 1 37 0 264 30 0 0 chr15 32479920 32479953 -68900568 + (GA)n Simple_repeat Simple_repeat 1 33 0 2516 64 0 6 chr15 32481179 32481535 -68898986 - AluSg SINE Alu 0 354 1 225 0 0 0 chr15 32484120 32484145 -68896376 + (TGG)n Simple_repeat Simple_repeat 1 25 0 291 306 0 36 chr15 32484400 32484511 -68896010 + CT-rich Low_complexity Low_complexity 1 107 0 185 0 40 0 chr15 32485416 32485441 -68895080 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 192 77 0 0 chr15 32485440 32485466 -68895055 + (CA)n Simple_repeat Simple_repeat 1 26 0 21 36 0 0 chr15 32486933 32486961 -68893560 + AT_rich Low_complexity Low_complexity 1 28 0 3660 82 2 0 chr15 32488968 32489459 -68891062 + L1PA10 LINE L1 5674 6165 -3 530 202 85 0 chr15 32489459 32489553 -68890968 - MER45 DNA AcHobo -76 102 1 198 91 0 0 chr15 32489732 32489765 -68890756 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 2069 130 6 22 chr15 32489781 32490097 -68890424 - AluSx SINE Alu -1 311 1 1588 176 7 35 chr15 32490315 32490632 -68889889 + AluJo SINE Alu 1 309 0 943 210 49 15 chr15 32490963 32491168 -68889353 + THE1C LTR MaLR 1 212 -163 978 152 35 30 chr15 32491190 32491387 -68889134 + THE1C LTR MaLR 178 375 0 1983 114 55 3 chr15 32491556 32491846 -68888675 - AluSq SINE Alu -8 305 1 2313 121 7 80 chr15 32492067 32492482 -68888039 + Tigger2 DNA MER2_type 2334 2718 0 180 282 0 0 chr15 32492550 32492589 -68887932 + L2 LINE L2 3160 3198 -74 249 33 0 0 chr15 32492647 32492669 -68887852 + (TA)n Simple_repeat Simple_repeat 1 52 0 249 33 0 0 chr15 32492669 32492699 -68887822 + (TA)n Simple_repeat Simple_repeat 2 31 0 307 314 24 47 chr15 32493960 32494129 -68886392 + MIR SINE MIR 77 241 -21 355 281 21 10 chr15 32494335 32494431 -68886090 + L2 LINE L2 3214 3310 -3 21 0 0 0 chr15 32494513 32494534 -68885987 + AT_rich Low_complexity Low_complexity 1 21 0 275 0 29 0 chr15 32495942 32495977 -68884544 + (CA)n Simple_repeat Simple_repeat 1 36 0 * 492 18 0 0 chr15 32495976 32496033 -68884488 + (GA)n Simple_repeat Simple_repeat 2 58 0 1241 134 0 5 chr15 32496658 32496844 -68883677 - AluSc SINE Alu -10 299 115 225 269 48 19 chr15 32496847 32496951 -68883570 + L1ME3A LINE L1 4936 5042 -1104 1536 154 56 19 chr15 32496952 32497218 -68883303 + MER1B DNA MER1_type 1 276 -63 1217 202 19 0 chr15 32497266 32497479 -68883042 + MER58A DNA MER1_type 8 224 0 259 306 18 9 chr15 32497518 32497629 -68882892 + L1ME3A LINE L1 5079 5190 -956 429 331 12 62 chr15 32497722 32497964 -68882557 + MLT1I LTR MaLR 59 288 -121 284 299 9 9 chr15 32498006 32498113 -68882408 + MLT1I LTR MaLR 281 387 -22 2283 262 74 20 chr15 32498159 32498996 -68881525 + L1ME3A LINE L1 5280 6161 -9 2082 122 86 21 chr15 32499026 32499363 -68881158 - THE1B LTR MaLR 0 364 6 357 24 0 0 chr15 32499416 32499458 -68881063 + (CA)n Simple_repeat Simple_repeat 1 42 0 23 0 0 0 chr15 32499624 32499647 -68880874 + AT_rich Low_complexity Low_complexity 1 23 0 282 308 43 8 chr15 32499801 32499918 -68880603 + L2 LINE L2 3189 3309 -4 289 264 126 0 chr15 32500663 32500750 -68879771 - MER5A DNA MER1_type -83 106 9 21 57 0 0 chr15 32500872 32500907 -68879614 + AT_rich Low_complexity Low_complexity 1 35 0 320 254 155 0 chr15 32502026 32502168 -68878353 - L1ME4a LINE L1 -2 6119 5956 10233 108 9 50 chr15 32502635 32504353 -68876168 - L1PA7 LINE L1 -792 5354 3708 5885 77 5 1 chr15 32504353 32505131 -68875390 + L1PA7 LINE L1 5366 6148 -6 1049 246 18 39 chr15 32505149 32505433 -68875088 - L1ME2 LINE L1 -17 6147 5870 198 0 0 0 chr15 32505434 32505456 -68875065 + (GA)n Simple_repeat Simple_repeat 2 23 0 * 252 0 0 0 chr15 32505455 32505483 -68875038 + (TG)n Simple_repeat Simple_repeat 2 29 0 2775 141 45 6 chr15 32505486 32505954 -68874567 - L1PB4 LINE L1 -13 6143 5658 438 258 0 0 chr15 32505956 32506045 -68874476 - FLAM_C SINE Alu -26 117 29 375 203 125 0 chr15 32506087 32506195 -68874326 - L1MD1 LINE L1 -412 5830 5737 1075 224 65 92 chr15 32506195 32506627 -68873894 + MLT1A1 LTR MaLR 1 365 0 1812 303 114 26 chr15 32506684 32507958 -68872563 - L1MCc LINE L1 -4891 1532 246 198 71 0 0 chr15 32508162 32508190 -68872331 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 21 0 0 0 chr15 32508346 32508367 -68872154 + AT_rich Low_complexity Low_complexity 1 21 0 405 0 0 0 chr15 32508635 32508680 -68871841 + (TA)n Simple_repeat Simple_repeat 1 45 0 1529 271 111 18 chr15 32508792 32509457 -68871064 + HAL1 LINE L1 592 1318 -1189 2218 127 3 0 chr15 32510279 32510587 -68869934 - AluSg SINE Alu -1 309 1 202 194 0 0 chr15 32511511 32511547 -68868974 + CT-rich Low_complexity Low_complexity 4 39 0 227 216 20 0 chr15 32512077 32512128 -68868393 + (TG)n Simple_repeat Simple_repeat 2 53 0 2391 94 0 0 chr15 32512250 32512548 -68867973 + AluSg SINE Alu 1 298 -12 5757 59 2 43 chr15 32512573 32513367 -68867154 + L1PA7 LINE L1 5390 6151 -3 2361 80 0 3 chr15 32513367 32513680 -68866841 + MER41A LTR ERV1 158 469 -85 281 233 11 0 chr15 32514417 32514507 -68866014 + (TA)n Simple_repeat Simple_repeat 2 92 0 6961 199 16 22 chr15 32514750 32516342 -68864179 + L1 LINE L1 3780 5361 -785 5766 68 4 15 chr15 32516337 32517266 -68863255 + L1PA8 LINE L1 5433 6171 -1 * 1808 190 52 3 chr15 32517266 32517632 -68862889 + L1PA16 LINE L1 5770 6155 -11 677 254 35 63 chr15 32517848 32518273 -68862248 - L1MC5 LINE L1 -60 7901 7489 290 239 0 0 chr15 32518577 32518648 -68861873 - L1ME2 LINE L1 -5 6159 6089 2475 195 19 60 chr15 32518656 32519221 -68861300 - MER44D DNA MER2_type 0 605 9 936 214 235 16 chr15 32519232 32519611 -68860910 - L1ME1 LINE L1 -86 6360 5899 4741 245 110 38 chr15 32519630 32521513 -68859008 - L1ME1 LINE L1 -1049 5377 3633 2560 147 2 81 chr15 32521513 32521927 -68858594 - L1PB4 LINE L1 -3 6153 5791 414 0 0 0 chr15 32521927 32521973 -68858548 + (CA)n Simple_repeat Simple_repeat 2 47 0 2560 147 2 81 chr15 32521973 32522103 -68858418 - L1PB4 LINE L1 -365 5791 5652 4741 245 110 38 chr15 32522103 32522180 -68858341 - L1ME1 LINE L1 -2793 3633 3563 2011 137 3 3 chr15 32522180 32522486 -68858035 - AluSx SINE Alu -5 307 2 4741 245 110 38 chr15 32522486 32522969 -68857552 - L1ME1 LINE L1 -2863 3563 2755 2184 171 40 7 chr15 32522975 32523403 -68857118 - L1MA8 LINE L1 -115 6176 5735 997 265 103 17 chr15 32523389 32524073 -68856448 - L1ME1 LINE L1 -3651 2775 2070 * 25 40 0 53 chr15 32524120 32524172 -68856349 + AT_rich Low_complexity Low_complexity 1 49 -23 3368 172 32 11 chr15 32524172 32524818 -68855703 + L1PA16 LINE L1 5500 6159 -7 25 40 0 53 chr15 32524818 32524841 -68855680 + AT_rich Low_complexity Low_complexity 49 72 0 21 0 0 0 chr15 32524853 32524874 -68855647 + AT_rich Low_complexity Low_complexity 1 21 0 700 294 73 34 chr15 32524876 32525463 -68855058 - L1ME1 LINE L1 -4604 2003 1196 2343 249 82 24 chr15 32525566 32526455 -68854066 + L1ME1 LINE L1 4095 5035 -1111 1977 185 19 0 chr15 32526462 32526835 -68853686 + L1ME1 LINE L1 5499 5878 -288 636 205 112 44 chr15 32526838 32527043 -68853478 + L1ME1 LINE L1 5934 6152 -14 349 288 65 47 chr15 32528090 32528260 -68852261 + MLT1K LTR MaLR 2 174 -414 292 350 24 24 chr15 32528566 32528772 -68851749 + L2 LINE L2 694 899 -2415 348 319 128 59 chr15 32528904 32529311 -68851210 - HAL1 LINE L1 -2045 462 28 249 425 16 8 chr15 32529612 32529739 -68850782 - L2 LINE L2 -22 3250 3123 21 0 0 0 chr15 32529753 32529774 -68850747 + AT_rich Low_complexity Low_complexity 1 21 0 228 382 132 14 chr15 32529874 32530094 -68850427 - L2 LINE L2 -209 3063 2818 220 336 144 8 chr15 32530181 32530306 -68850215 - L3b LINE CR1 -167 1416 1275 274 197 42 0 chr15 32531386 32531457 -68849064 + (TA)n Simple_repeat Simple_repeat 1 74 0 2241 113 16 34 chr15 32531759 32532139 -68848382 - THE1C LTR MaLR -2 373 1 903 276 75 4 chr15 32532897 32533136 -68847385 + MIR SINE MIR 1 256 -6 357 306 165 0 chr15 32533232 32533353 -68847168 + L2 LINE L2 3121 3261 -11 2305 68 0 4 chr15 32533376 32533657 -68846864 + AluY SINE Alu 7 286 -25 298 250 0 67 chr15 32533694 32533798 -68846723 + MIR SINE MIR 166 262 0 195 162 0 0 chr15 32534041 32534078 -68846443 + (CAA)n Simple_repeat Simple_repeat 2 38 0 304 308 50 22 chr15 32534084 32534266 -68846255 + Charlie8 DNA MER1_type 82 268 -2149 189 0 0 0 chr15 32534383 32534404 -68846117 + (TG)n Simple_repeat Simple_repeat 2 22 0 30 0 0 0 chr15 32534853 32534883 -68845638 + AT_rich Low_complexity Low_complexity 1 30 0 263 344 136 29 chr15 32535377 32535650 -68844871 + L3b LINE CR1 1248 1549 -34 207 0 0 0 chr15 32535903 32535926 -68844595 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 6425 85 13 2 chr15 32535948 32536885 -68843636 + L1PA11 LINE L1 5208 6158 -16 4998 89 7 4 chr15 32537335 32538041 -68842480 + L1PA8 LINE L1 5461 6168 -4 16549 159 24 7 chr15 32538078 32541079 -68839442 - L1P LINE L1 -1567 4579 1528 581 207 67 0 chr15 32541083 32541218 -68839303 - L1P LINE L1 -4493 1653 1510 1051 281 153 51 chr15 32541324 32541998 -68838523 - L2 LINE L2 -27 3286 2523 223 370 86 6 chr15 32542466 32542628 -68837893 + L2 LINE L2 2875 3049 -223 366 286 168 14 chr15 32542806 32543026 -68837495 - MIR SINE MIR 0 262 9 207 385 49 16 chr15 32544055 32544177 -68836344 + L2 LINE L2 3145 3270 -2 25 0 0 0 chr15 32544501 32544526 -68835995 + AT_rich Low_complexity Low_complexity 1 25 0 2238 198 67 4 chr15 32545043 32545518 -68835003 + MLT1D LTR MaLR 1 505 0 11228 157 22 8 chr15 32546054 32549277 -68831244 - L1MA2 LINE L1 -7 6297 3028 1439 149 156 32 chr15 32549448 32549763 -68830758 + MER47A DNA MER2_type 13 366 0 180 111 0 0 chr15 32549821 32549848 -68830673 - MIR SINE MIR -79 183 157 1790 158 4 4 chr15 32549959 32550238 -68830283 + AluSx SINE Alu 1 279 -33 27 62 0 0 chr15 32550345 32550393 -68830128 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr15 32550515 32550536 -68829985 + AT_rich Low_complexity Low_complexity 1 21 0 1674 182 7 0 chr15 32550905 32551196 -68829325 + MER57A LTR ERV1 111 403 0 258 32 0 0 chr15 32551235 32551266 -68829255 + (CA)n Simple_repeat Simple_repeat 2 32 0 323 182 0 0 chr15 32551271 32551326 -68829195 - L1ME LINE L1 -498 5672 5618 1626 197 45 30 chr15 32551546 32551942 -68828579 - MLT2F LTR ERVL 0 663 262 249 226 278 26 chr15 32551972 32552087 -68828434 - MLT2F LTR ERVL -517 146 3 251 89 0 89 chr15 32552146 32552237 -68828284 + Alu SINE Alu 252 337 0 2016 186 42 5 chr15 32552433 32552864 -68827657 - L1MB5 LINE L1 -9 6165 5719 382 209 12 58 chr15 32553023 32553109 -68827412 + MLT1J LTR MaLR 153 234 -277 734 153 0 0 chr15 32555854 32555978 -68824543 + MLT1D LTR MaLR 379 502 -3 451 298 94 28 chr15 32556086 32556341 -68824180 + L1ME LINE L1 5551 5822 -299 431 239 108 33 chr15 32556906 32557119 -68823402 + L1ME4a LINE L1 5534 5762 -359 333 228 61 26 chr15 32557124 32557238 -68823283 + L1ME4a LINE L1 5806 5923 -198 458 319 42 6 chr15 32559261 32559439 -68821082 - MIR SINE MIR -65 197 14 1615 200 0 30 chr15 32559656 32559956 -68820565 + AluJb SINE Alu 1 291 -21 1487 142 156 7 chr15 32560381 32560676 -68819845 - MER44D DNA MER2_type 0 609 1 2602 88 11 3 chr15 32560859 32561224 -68819297 - L1PB1 LINE L1 0 6151 5784 321 198 0 0 chr15 32561230 32561351 -68819170 + (TA)n Simple_repeat Simple_repeat 1 121 0 233 215 11 43 chr15 32561462 32561555 -68818966 - L1MC4 LINE L1 -1339 6703 6614 220 159 16 16 chr15 32561558 32561621 -68818900 + (TA)n Simple_repeat Simple_repeat 2 64 0 311 266 0 43 chr15 32561625 32561719 -68818802 + L1MC4 LINE L1 6614 6703 -1339 306 206 41 0 chr15 32561689 32561762 -68818759 + L1MCa LINE L1 1995 2070 -4356 * 336 176 0 0 chr15 32561762 32561830 -68818691 + (TA)n Simple_repeat Simple_repeat 1 68 0 227 91 136 0 chr15 32561852 32561896 -68818625 + L1P5 LINE L1 5742 5791 -360 3457 89 33 2 chr15 32561921 32562435 -68818086 - L1P5 LINE L1 -359 5792 5263 844 257 18 73 chr15 32562506 32562616 -68817905 - MIR SINE MIR 0 262 147 1963 150 0 11 chr15 32562616 32562902 -68817619 - AluJb SINE Alu -17 295 13 844 257 18 73 chr15 32562902 32563063 -68817458 - MIR SINE MIR -115 147 6 672 87 19 19 chr15 32563407 32563510 -68817011 + LTR7 LTR ERV1 346 448 -2 5406 115 22 19 chr15 32563512 32564830 -68815691 + HERVH LTR ERV1 1 1627 -6086 644 294 88 0 chr15 32564930 32565236 -68815285 - L1MCc LINE L1 -4954 1469 1137 375 230 61 131 chr15 32565578 32565922 -68814599 - L1MCc LINE L1 -5955 468 149 1347 99 31 0 chr15 32565937 32566129 -68814392 + AluSp SINE Alu 116 313 0 1964 206 50 3 chr15 32566194 32566577 -68813944 - MLT1D LTR MaLR 0 505 105 1130 72 0 0 chr15 32566582 32566721 -68813800 + AluSg/x SINE Alu 154 292 -17 467 176 8 92 chr15 32566721 32566759 -68813762 - MLT1D LTR MaLR -391 114 74 1821 107 24 134 chr15 32566759 32567178 -68813343 - THE1C LTR MaLR 0 375 3 467 176 8 92 chr15 32567178 32567258 -68813263 - MLT1D LTR MaLR -431 74 6 24 32 0 0 chr15 32567664 32567695 -68812826 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr15 32568295 32568326 -68812195 + AT_rich Low_complexity Low_complexity 1 31 0 457 313 6 6 chr15 32570026 32570202 -68810319 - L1ME LINE L1 -394 5727 5552 234 0 0 0 chr15 32570685 32570711 -68809810 + (TC)n Simple_repeat Simple_repeat 1 26 0 180 0 0 0 chr15 32571239 32571259 -68809262 + (T)n Simple_repeat Simple_repeat 1 20 0 239 261 72 0 chr15 32571528 32571597 -68808924 - L2 LINE L2 -309 2963 2890 642 221 101 13 chr15 32574493 32574651 -68805870 - MER91B DNA MER1_type -7 183 12 231 36 0 0 chr15 32574654 32574682 -68805839 + (T)n Simple_repeat Simple_repeat 1 28 0 3708 52 11 0 chr15 32575111 32575573 -68804948 + L1PA5 LINE L1 5686 6152 -2 281 288 182 0 chr15 32576450 32576582 -68803939 + L2 LINE L2 3117 3272 0 1650 77 9 0 chr15 32578895 32579115 -68801406 - L1PA8 LINE L1 -2 6170 5949 2063 125 34 3 chr15 32579236 32579532 -68800989 - AluSq SINE Alu -8 305 1 213 241 19 37 chr15 32580348 32580402 -68800119 - MIR3 SINE MIR -31 177 125 492 244 26 0 chr15 32580418 32580533 -68799988 - L2 LINE L2 0 3313 3196 730 314 115 74 chr15 32580533 32581203 -68799318 - L2 LINE L2 -253 3060 2419 4582 98 1 34 chr15 32581203 32581919 -68798602 - L1PA13 LINE L1 0 6163 5471 730 314 115 74 chr15 32581919 32582135 -68798386 - L2 LINE L2 -894 2419 2213 13419 79 12 2 chr15 32582135 32584774 -68795747 + L1PA7 LINE L1 3504 6154 0 730 314 115 74 chr15 32584774 32584945 -68795576 - L2 LINE L2 -1100 2213 1959 22 0 0 0 chr15 32585629 32585651 -68794870 + AT_rich Low_complexity Low_complexity 1 22 0 2131 128 0 0 chr15 32585656 32585945 -68794576 + AluSx SINE Alu 1 289 -23 981 137 6 48 chr15 32586305 32586473 -68794048 - FRAM SINE Alu -19 157 1 209 302 288 19 chr15 32586865 32587077 -68793444 + L3 LINE CR1 969 1237 -340 208 275 204 21 chr15 32587222 32587364 -68793157 + MIR SINE MIR 78 245 -17 180 0 0 0 chr15 32587374 32587394 -68793127 + (TTA)n Simple_repeat Simple_repeat 1 20 0 245 340 0 30 chr15 32587432 32587532 -68792989 + L3 LINE CR1 1431 1527 -50 27 49 0 0 chr15 32588061 32588102 -68792419 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr15 32593896 32593918 -68786603 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr15 32594172 32594196 -68786325 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr15 32594285 32594317 -68786204 + AT_rich Low_complexity Low_complexity 1 32 0 457 293 9 0 chr15 32594570 32594686 -68785835 - L2 LINE L2 0 3313 3197 345 222 35 58 chr15 32595100 32595271 -68785250 - Charlie7 DNA MER1_type -1 2611 2445 3684 77 0 0 chr15 32595271 32595766 -68784755 - L1P LINE L1 -893 5253 4759 2276 68 3 0 chr15 32595766 32596061 -68784460 + L1PA7 LINE L1 5856 6151 -3 834 237 98 15 chr15 32596241 32596507 -68784014 + L2 LINE L2 3021 3308 -5 282 225 38 25 chr15 32596507 32596587 -68783934 - Charlie7 DNA MER1_type -1962 650 570 634 294 108 19 chr15 32596644 32597022 -68783499 - Charlie7 DNA MER1_type -2149 463 52 188 269 51 26 chr15 32597298 32597376 -68783145 + L3b LINE CR1 1279 1358 -225 683 330 107 17 chr15 32600497 32600668 -68779853 - L2 LINE L2 -55 3258 3104 345 93 0 0 chr15 32600668 32600722 -68779799 + (TG)n Simple_repeat Simple_repeat 2 55 0 683 330 107 17 chr15 32600722 32601040 -68779481 - L2 LINE L2 -209 3104 2727 706 262 53 84 chr15 32601079 32601434 -68779087 - L2 LINE L2 -943 2371 2028 1178 125 5 2 chr15 32601434 32601636 -68778885 + L1PB2 LINE L1 5755 5954 -197 386 229 183 7 chr15 32601682 32601757 -68778764 - L2 LINE L2 -1437 1877 1817 2039 105 43 0 chr15 32601757 32602033 -68778488 + AluSg SINE Alu 6 293 -17 386 229 183 7 chr15 32602033 32602110 -68778411 - L2 LINE L2 -1497 1817 1698 1367 188 29 36 chr15 32602232 32602602 -68777919 - MLT2B1 LTR ERVL -70 450 1 656 323 100 18 chr15 32602695 32603026 -68777495 - L2 LINE L2 -2074 1240 883 2524 133 36 5 chr15 32603225 32603638 -68776883 + MSTB LTR MaLR 1 426 0 204 135 0 0 chr15 32604471 32604508 -68776013 + (TG)n Simple_repeat Simple_repeat 1 37 0 186 71 0 0 chr15 32604839 32604867 -68775654 + (CAAT)n Simple_repeat Simple_repeat 3 30 0 4920 256 42 29 chr15 32605072 32605537 -68774984 - L1PA12 LINE L1 -4741 2843 2385 195 69 0 0 chr15 32605537 32605566 -68774955 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4920 256 42 29 chr15 32605566 32606866 -68773655 - L1PA12 LINE L1 -5199 2385 1 225 0 0 0 chr15 32607203 32607228 -68773293 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 7506 31 6 0 chr15 32607229 32608704 -68771817 - L1PA3 LINE L1 -3 6152 4674 840 230 0 28 chr15 32608710 32608941 -68771580 - MLT1E2 LTR MaLR -288 217 1 22 0 0 0 chr15 32611291 32611313 -68769208 + AT_rich Low_complexity Low_complexity 1 22 0 250 240 0 0 chr15 32611739 32611789 -68768732 + L2 LINE L2 3210 3259 -13 877 159 0 79 chr15 32612241 32612430 -68768091 - MER20 DNA MER1_type 0 219 46 1747 187 33 30 chr15 32612451 32612815 -68767706 - MLT1A1 LTR MaLR 0 365 1 479 183 21 0 chr15 32612815 32612908 -68767613 - MLT1A1-int LTR MaLR 0 1735 1641 4556 219 32 15 chr15 32612914 32613871 -68766650 - MLT1A1-int LTR MaLR -761 974 1 1667 194 36 31 chr15 32613871 32614231 -68766290 - MLT1A1 LTR MaLR 0 365 4 693 297 50 38 chr15 32614384 32614623 -68765898 - MIR SINE MIR 0 262 21 192 292 191 38 chr15 32615006 32615125 -68765396 + MIR SINE MIR 20 119 -143 5962 132 57 69 chr15 32615125 32616369 -68764152 - Tigger3b DNA MER2_type -1 1230 2 192 292 191 38 chr15 32616369 32616458 -68764063 + MIR SINE MIR 119 260 -2 21 57 0 0 chr15 32616465 32616500 -68764021 + AT_rich Low_complexity Low_complexity 1 35 0 201 208 0 21 chr15 32617317 32617365 -68763156 + (TA)n Simple_repeat Simple_repeat 1 47 0 342 301 97 26 chr15 32617474 32617848 -68762673 - L1MC/D LINE L1 -297 5824 5437 313 344 166 31 chr15 32618284 32618831 -68761690 - L2 LINE L2 -705 2609 1989 23 0 0 0 chr15 32618833 32618856 -68761665 + AT_rich Low_complexity Low_complexity 1 23 0 2011 95 4 0 chr15 32618861 32619125 -68761396 + AluSc SINE Alu 1 265 -44 519 301 77 42 chr15 32619727 32620248 -68760273 - L1ME3A LINE L1 -343 5827 5289 3264 210 32 19 chr15 32620415 32620614 -68759907 - L1MB8 LINE L1 -6 6172 5974 1551 244 139 16 chr15 32620614 32621268 -68759253 - L1MC4 LINE L1 -777 5369 5243 262 59 0 0 chr15 32621270 32621304 -68759217 - MLT2B2 LTR ERVL -15 538 505 2106 199 49 42 chr15 32621348 32621820 -68758701 - MLT2B2 LTR ERVL -40 475 1 1519 162 72 64 chr15 32621820 32622208 -68758313 - L1MC4 LINE L1 -890 5256 4866 804 116 6 92 chr15 32622273 32622437 -68758084 + L1PA8 LINE L1 6023 6172 0 238 262 48 0 chr15 32622676 32622760 -68757761 - L1MB8 LINE L1 -1071 5075 4988 427 340 37 51 chr15 32624738 32625032 -68755489 + HAL1b LINE L1 517 806 -542 1543 211 3 3 chr15 32625398 32625706 -68754815 + AluJo SINE Alu 3 310 -2 28070 79 4 43 chr15 32625969 32630610 -68749911 + L1P3 LINE L1 1331 5787 -385 2312 72 0 20 chr15 32630611 32630915 -68749606 + AluY SINE Alu 1 298 -13 1056 241 38 3 chr15 32630920 32631265 -68749256 + L1M4 LINE L1 2912 3268 -2878 876 302 38 7 chr15 32631269 32631696 -68748825 + L1M4 LINE L1 4068 4507 -1639 1396 62 0 0 chr15 32631733 32631910 -68748611 - L1PA7 LINE L1 -5 6149 5973 251 266 26 52 chr15 32632106 32632298 -68748223 + L1M4 LINE L1 2836 3022 -3124 43859 41 2 1 chr15 32632374 32638522 -68741999 - L1PA3 LINE L1 -4 6151 1 291 68 0 23 chr15 32638539 32638583 -68741938 + L1PB4 LINE L1 5441 5483 -673 1342 199 12 0 chr15 32638585 32638831 -68741690 + AluJo SINE Alu 38 286 -26 3785 156 23 0 chr15 32638850 32639499 -68741022 + L1PB4 LINE L1 5450 6113 -43 6431 174 33 32 chr15 32639599 32640872 -68739649 - L1P LINE L1 -4862 1284 11 13840 157 28 46 chr15 32640883 32643755 -68736766 - L1P LINE L1 -3317 2829 12 1376 253 67 0 chr15 32643782 32644229 -68736292 - L1MCb LINE L1 -3241 3323 2847 3133 263 63 45 chr15 32644280 32644558 -68735963 - L1MCb LINE L1 -4010 2735 2463 198 0 0 0 chr15 32644558 32644580 -68735941 + (TA)n Simple_repeat Simple_repeat 2 23 0 2278 92 0 0 chr15 32644580 32644872 -68735649 - AluY SINE Alu -19 292 1 3133 263 63 45 chr15 32644872 32645498 -68735023 - L1MCb LINE L1 -4282 2463 1849 16061 37 0 0 chr15 32645498 32648235 -68732286 + L1PA4 LINE L1 3427 6172 0 3133 263 63 45 chr15 32648235 32649871 -68730650 - L1MCb LINE L1 -4896 1849 9 341 308 8 0 chr15 32650273 32650390 -68730131 + L1ME LINE L1 5669 5786 -335 310 316 35 0 chr15 32650399 32650513 -68730008 - L1ME4a LINE L1 -206 5915 5798 23 68 0 0 chr15 32651476 32651520 -68729001 + AT_rich Low_complexity Low_complexity 1 44 0 859 301 59 12 chr15 32651818 32652140 -68728381 - LTR16A LTR ERVL -98 352 16 348 292 71 24 chr15 32652250 32652418 -68728103 - HERVL LTR ERVL -699 4955 4780 348 323 0 0 chr15 32652494 32652593 -68727928 - HERVL LTR ERVL -1110 4654 4556 745 284 29 10 chr15 32652679 32652887 -68727634 + MLT1E LTR MaLR 382 593 0 1417 293 108 18 chr15 32653049 32653550 -68726971 - HERVL LTR ERVL -3861 1135 590 614 285 27 27 chr15 32653611 32653832 -68726689 - HERVL LTR ERVL -4501 495 275 718 163 32 0 chr15 32653835 32653958 -68726563 + FLAM_C SINE Alu 1 127 -16 649 326 154 18 chr15 32654205 32654588 -68725933 - LTR16A LTR ERVL 0 450 16 3070 110 43 4 chr15 32658569 32659034 -68721487 - L1PA16 LINE L1 -1 6165 5683 2185 107 3 3 chr15 32661102 32661392 -68719129 + AluSx SINE Alu 2 291 -21 183 129 0 0 chr15 32661397 32661428 -68719093 + (TA)n Simple_repeat Simple_repeat 2 32 0 24 85 0 0 chr15 32661749 32661808 -68718713 + AT_rich Low_complexity Low_complexity 1 59 0 2746 234 87 66 chr15 32664159 32665358 -68715163 - MER69B DNA AcHobo 0 1226 3 381 328 86 0 chr15 32665365 32665493 -68715028 + MIR SINE MIR 14 152 -110 1499 134 34 7 chr15 32665498 32665767 -68714754 + AluSx SINE Alu 1 276 -36 1074 167 22 45 chr15 32666398 32666692 -68713829 + AluSx SINE Alu 21 308 0 1177 192 45 10 chr15 32667068 32667380 -68713141 - MER33 DNA MER1_type 0 324 2 180 0 0 0 chr15 32669157 32669177 -68711344 + (T)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr15 32670279 32670302 -68710219 + AT_rich Low_complexity Low_complexity 1 23 0 1027 80 34 11 chr15 32671784 32671960 -68708561 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chr15 32673456 32673477 -68707044 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr15 32674769 32674793 -68705728 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chr15 32675979 32676008 -68704513 + AT_rich Low_complexity Low_complexity 1 29 0 905 201 0 0 chr15 32676015 32676204 -68704317 + AluJb SINE Alu 141 312 0 442 279 52 22 chr15 32677015 32677151 -68703370 - MIR3 SINE MIR -49 159 20 2409 70 7 3 chr15 32677643 32677942 -68702579 + AluSx SINE Alu 2 301 -11 2400 66 7 0 chr15 32678401 32678704 -68701817 + AluY SINE Alu 1 305 -6 240 35 0 0 chr15 32679216 32679245 -68701276 + (CA)n Simple_repeat Simple_repeat 1 29 0 21 36 0 0 chr15 32679301 32679329 -68701192 + AT_rich Low_complexity Low_complexity 1 28 0 288 67 89 0 chr15 32679348 32679393 -68701128 - MADE1 DNA Mariner 0 80 32 477 285 15 68 chr15 32681453 32681678 -68698843 + MIR SINE MIR 40 246 -16 657 199 242 55 chr15 32681898 32682224 -68698297 + MLT1L LTR MaLR 225 611 -4 2436 89 0 3 chr15 32682419 32682733 -68697788 - AluSp SINE Alu 0 313 1 621 106 0 0 chr15 32684580 32684665 -68695856 + AluJ/FLAM SINE Alu 3 87 -225 321 282 98 81 chr15 32684708 32684904 -68695617 + L1ME3A LINE L1 3469 3660 -2486 243 0 0 0 chr15 32684904 32684931 -68695590 + (TG)n Simple_repeat Simple_repeat 2 28 0 2333 60 0 0 chr15 32684931 32685214 -68695307 - AluY SINE Alu -28 283 1 321 282 98 81 chr15 32685214 32685686 -68694835 + L1ME3A LINE L1 3659 4150 -1996 274 284 0 21 chr15 32685700 32685767 -68694754 + GA-rich Low_complexity Low_complexity 4 70 -26 1838 177 0 3 chr15 32685767 32686078 -68694443 + AluJb SINE Alu 1 310 -2 274 284 0 21 chr15 32686078 32686105 -68694416 + GA-rich Low_complexity Low_complexity 70 96 0 239 192 96 14 chr15 32686105 32686178 -68694343 + L1ME3A LINE L1 4151 4229 -1917 908 280 94 39 chr15 32686266 32687263 -68693258 + L1ME3A LINE L1 4912 5962 -208 22 56 0 0 chr15 32687310 32687346 -68693175 + AT_rich Low_complexity Low_complexity 1 36 0 213 308 13 13 chr15 32687793 32687871 -68692650 + GA-rich Low_complexity Low_complexity 3 80 0 27 81 0 0 chr15 32688062 32688124 -68692397 + AT_rich Low_complexity Low_complexity 1 62 0 325 284 71 33 chr15 32688268 32688451 -68692070 + L1ME LINE L1 5598 5787 -334 2281 75 3 17 chr15 32688655 32688950 -68691571 - AluY SINE Alu -20 291 1 189 107 0 0 chr15 32689290 32689318 -68691203 + (CA)n Simple_repeat Simple_repeat 1 28 0 341 318 7 52 chr15 32690842 32690996 -68689525 + MIR3 SINE MIR 17 163 -45 358 213 0 64 chr15 32691021 32691115 -68689406 - MIR SINE MIR -13 249 162 688 199 12 30 chr15 32691115 32691281 -68689240 - LTR33 LTR ERVL 0 521 359 235 257 27 0 chr15 32691437 32691511 -68689010 - LTR33 LTR ERVL -443 78 3 263 394 15 0 chr15 32691517 32691654 -68688867 - MIR SINE MIR -106 156 18 4182 227 66 17 chr15 32693809 32695474 -68685047 + L1MC3 LINE L1 4527 5403 -743 315 291 89 45 chr15 32695539 32695718 -68684803 + L1M4 LINE L1 5271 5457 -717 689 77 39 0 chr15 32695844 32695948 -68684573 + L1PB1 LINE L1 6042 6149 -2 26 30 0 0 chr15 32696327 32696360 -68684161 + AT_rich Low_complexity Low_complexity 1 33 0 364 236 110 24 chr15 32697422 32697549 -68682972 - L2 LINE L2 -88 3225 3088 191 393 47 0 chr15 32698765 32698872 -68681649 + L2 LINE L2 2903 3014 -258 218 220 20 0 chr15 32699474 32699524 -68680997 + CT-rich Low_complexity Low_complexity 2 52 0 2297 88 7 0 chr15 32700324 32700621 -68679900 + AluY SINE Alu 1 299 -12 204 365 43 17 chr15 32700997 32701112 -68679409 + MIR3 SINE MIR 10 127 -81 270 0 0 0 chr15 32701171 32701201 -68679320 + (TA)n Simple_repeat Simple_repeat 1 30 0 450 346 54 8 chr15 32702211 32702451 -68678070 - L2 LINE L2 -1305 2009 1759 2142 105 3 0 chr15 32702618 32702913 -68677608 + AluSq SINE Alu 1 296 -17 3634 42 7 0 chr15 32703097 32703545 -68676976 + L1PA5 LINE L1 5697 6147 -7 309 171 26 43 chr15 32704326 32704480 -68676041 + (TTATA)n Simple_repeat Simple_repeat 1 151 0 358 282 160 0 chr15 32704977 32705108 -68675413 + HAL1 LINE L1 1454 1605 -902 21 0 0 0 chr15 32705968 32705989 -68674532 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr15 32706295 32706325 -68674196 + (CA)n Simple_repeat Simple_repeat 2 31 0 197 291 222 17 chr15 32708823 32708940 -68671581 + MIR SINE MIR 22 162 -100 2580 181 50 2 chr15 32708948 32709467 -68671054 - L1MC3 LINE L1 -3 7782 7239 584 146 9 0 chr15 32709621 32709731 -68670790 + L1MA10 LINE L1 6223 6333 -1 240 237 92 0 chr15 32710106 32710182 -68670339 + L2 LINE L2 3231 3313 0 26 0 0 0 chr15 32710210 32710236 -68670285 + AT_rich Low_complexity Low_complexity 1 26 0 23 86 0 0 chr15 32713010 32713068 -68667453 + AT_rich Low_complexity Low_complexity 1 58 0 266 336 55 20 chr15 32713784 32713930 -68666591 + MIR3 SINE MIR 34 184 -24 268 327 36 36 chr15 32716602 32716825 -68663696 + L2 LINE L2 2848 3070 -202 2054 137 0 0 chr15 32716825 32717155 -68663366 - AluSx SINE Alu 0 330 1 376 274 59 0 chr15 32717280 32717382 -68663139 + L2 LINE L2 3197 3304 -9 253 371 13 33 chr15 32717764 32717915 -68662606 + MIR SINE MIR 16 163 -99 198 245 31 102 chr15 32717927 32718025 -68662496 + L2 LINE L2 3223 3313 0 461 250 19 9 chr15 32719142 32719250 -68661271 + MIR SINE MIR 119 227 -35 22 0 0 0 chr15 32720156 32720178 -68660343 + AT_rich Low_complexity Low_complexity 1 22 0 6357 24 1 0 chr15 32721061 32721805 -68658716 - L1PA4 LINE L1 -4 6151 5407 1888 139 60 3 chr15 32722148 32722465 -68658056 - MER2 DNA MER2_type -10 335 1 243 0 0 0 chr15 32724350 32724377 -68656144 + (CA)n Simple_repeat Simple_repeat 2 28 0 648 286 36 18 chr15 32724910 32725134 -68655387 + MIR SINE MIR 34 261 -1 216 182 0 0 chr15 32725834 32725878 -68654643 + T-rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr15 32727720 32727741 -68652780 + AT_rich Low_complexity Low_complexity 1 21 0 453 97 0 0 chr15 32729849 32729921 -68650600 + (TA)n Simple_repeat Simple_repeat 2 73 0 198 290 0 29 chr15 32730373 32730442 -68650079 - MIR SINE MIR -91 171 105 189 0 0 0 chr15 32731041 32731062 -68649459 + (A)n Simple_repeat Simple_repeat 1 21 0 2075 170 46 12 chr15 32731567 32731978 -68648543 - L1MC3 LINE L1 0 7785 7361 336 295 143 0 chr15 32731980 32732085 -68648436 - MIR SINE MIR -70 192 73 291 315 22 11 chr15 32732870 32732962 -68647559 + MER5B DNA MER1_type 37 129 -49 188 365 40 0 chr15 32733044 32733118 -68647403 - L2 LINE L2 -52 3220 3144 375 296 252 0 chr15 32733548 32733683 -68646838 - MLT1G1 LTR MaLR -45 550 382 2624 96 6 3 chr15 32733977 32734340 -68646181 - THE1B LTR MaLR 0 364 1 234 149 0 21 chr15 32734442 32734489 -68646032 - L1MC4 LINE L1 -1339 6703 6658 249 313 24 0 chr15 32734522 32734605 -68645916 - MLT1F1 LTR MaLR -456 111 27 491 231 100 44 chr15 32734900 32735060 -68645461 - MIR SINE MIR -66 196 28 2474 45 3 7 chr15 32735212 32735521 -68645000 - AluY SINE Alu -3 308 1 245 250 0 0 chr15 32736982 32737034 -68643487 + MIR SINE MIR 102 153 -109 5733 119 21 7 chr15 32737334 32738361 -68642160 - L1PA16 LINE L1 -11 6155 5121 319 275 85 58 chr15 32738655 32738844 -68641677 + MIR SINE MIR 69 262 0 292 315 34 60 chr15 32740165 32740314 -68640207 - MIR SINE MIR -6 256 112 181 269 201 15 chr15 32740781 32740915 -68639606 - MIR3 SINE MIR -23 185 27 210 118 0 0 chr15 32741111 32741145 -68639376 + (CTA)n Simple_repeat Simple_repeat 3 36 0 813 269 8 67 chr15 32741563 32741831 -68638690 + MIR SINE MIR 3 254 -8 248 321 98 9 chr15 32742517 32742629 -68637892 - MIR SINE MIR -121 141 20 302 218 55 9 chr15 32742938 32743048 -68637473 - MER113 DNA MER1_type? -372 149 35 1448 198 20 23 chr15 32743061 32743404 -68637117 - Charlie4a DNA MER1_type -119 389 48 248 341 12 0 chr15 32743432 32743514 -68637007 + MIR SINE MIR 39 121 -141 18161 50 12 3 chr15 32745389 32748508 -68632013 - L1PA5 LINE L1 -1 6153 3014 6169 50 14 1 chr15 32748508 32749309 -68631212 + L1PA5 LINE L1 2177 2987 -3159 237 219 19 9 chr15 32749671 32749776 -68630745 + (TA)n Simple_repeat Simple_repeat 2 107 0 297 354 31 16 chr15 32750061 32750188 -68630333 - L1MEd LINE L1 -5765 354 226 411 38 0 0 chr15 32750518 32750571 -68629950 + (CA)n Simple_repeat Simple_repeat 2 54 0 600 211 26 20 chr15 32751362 32751514 -68629007 + MIR SINE MIR 110 262 0 12032 31 0 1 chr15 32752192 32754399 -68626122 - L1PA3 LINE L1 0 6155 3950 21 0 0 0 chr15 32754783 32754804 -68625717 + AT_rich Low_complexity Low_complexity 1 21 0 1402 242 122 27 chr15 32754848 32755324 -68625197 - L1MD3 LINE L1 -10 7985 7465 5365 158 37 40 chr15 32755328 32755429 -68625092 - L1PB3 LINE L1 -1 6153 6053 1912 169 122 10 chr15 32755429 32755814 -68624707 - MSTA LTR MaLR 0 428 1 9236 146 6 42 chr15 32755814 32757450 -68623071 - MSTA-int LTR MaLR 0 1580 3 1682 161 177 11 chr15 32757452 32757819 -68622702 - MSTA LTR MaLR 0 428 1 5365 158 37 40 chr15 32757819 32759640 -68620881 - L1PB3 LINE L1 -101 6053 4224 2849 229 39 64 chr15 32759640 32761137 -68619384 - L1MC4 LINE L1 -655 7387 5923 430 291 126 71 chr15 32762247 32762725 -68617796 + L2 LINE L2 2400 2903 -411 304 301 39 10 chr15 32762889 32762992 -68617529 + L2 LINE L2 3208 3313 0 188 284 125 11 chr15 32764154 32764242 -68616279 - MIR SINE MIR -46 216 119 789 279 73 5 chr15 32765435 32765654 -68614867 - MIR SINE MIR -25 237 4 640 143 25 28 chr15 32766202 32766358 -68614163 - MSTA LTR MaLR 0 428 221 41912 38 25 2 chr15 32766358 32772360 -68608161 - L1PA2 LINE L1 -11 6144 1 1493 179 8 0 chr15 32772361 32772612 -68607909 - MSTA LTR MaLR -174 254 2 1581 272 82 18 chr15 32772613 32773124 -68607397 + MLT1G1 LTR MaLR 25 568 -27 187 283 33 0 chr15 32773406 32773466 -68607055 + L3b LINE CR1 1310 1371 -212 29 47 0 0 chr15 32774002 32774045 -68606476 + AT_rich Low_complexity Low_complexity 1 43 0 27298 124 16 74 chr15 32774743 32779905 -68600616 + L1P LINE L1 12 4875 -1271 1340 128 0 11 chr15 32779905 32780163 -68600358 - GSAT Satellite centromeric 0 255 1 6949 52 12 1 chr15 32780163 32781408 -68599113 + L1PA7 LINE L1 4900 6154 0 993 166 125 30 chr15 32782369 32782664 -68597857 + MER33 DNA MER1_type 2 324 0 445 239 189 35 chr15 32782664 32782865 -68597656 + MIR SINE MIR 17 248 -14 194 330 165 10 chr15 32782872 32782969 -68597552 + MIR SINE MIR 31 142 -66 476 252 17 0 chr15 32783036 32783151 -68597370 + MIR3 SINE MIR 91 207 -1 182 376 0 12 chr15 32785611 32785696 -68594825 + MIR SINE MIR 117 200 -62 21 0 0 0 chr15 32785782 32785803 -68594718 + AT_rich Low_complexity Low_complexity 1 21 0 423 296 17 41 chr15 32785846 32786018 -68594503 - MIR SINE MIR -73 189 22 1802 150 158 21 chr15 32786059 32786433 -68594088 - MSTA LTR MaLR 0 428 4 22 56 0 0 chr15 32786897 32786933 -68593588 + AT_rich Low_complexity Low_complexity 1 36 0 247 62 0 42 chr15 32787210 32787258 -68593263 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr15 32788385 32788407 -68592114 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr15 32788696 32788721 -68591800 + AT_rich Low_complexity Low_complexity 1 25 0 249 33 0 0 chr15 32789354 32789384 -68591137 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 378 0 0 0 chr15 32789383 32789425 -68591096 + (CA)n Simple_repeat Simple_repeat 1 42 0 181 107 0 0 chr15 32789628 32789656 -68590865 + MIR SINE MIR 110 137 -71 490 263 0 8 chr15 32789730 32789863 -68590658 + MER94 DNA DNA 1 132 -2 682 171 36 0 chr15 32790279 32790390 -68590131 + FLAM_C SINE Alu 2 116 -17 363 73 0 0 chr15 32790390 32790445 -68590076 + (GA)n Simple_repeat Simple_repeat 1 55 0 23 0 0 0 chr15 32790627 32790650 -68589871 + AT_rich Low_complexity Low_complexity 1 23 0 3835 94 63 0 chr15 32791292 32791618 -68588903 - L1PB1 LINE L1 -1 6150 5771 231 36 0 0 chr15 32791618 32791646 -68588875 + (TG)n Simple_repeat Simple_repeat 2 29 0 3835 94 63 0 chr15 32791646 32791892 -68588629 - L1PB1 LINE L1 -380 5771 5542 815 214 22 16 chr15 32792392 32792574 -68587947 - AluJo SINE Alu -23 289 107 4317 134 31 53 chr15 32792801 32793615 -68586906 + L1PB4 LINE L1 5360 6155 -1 21 0 0 0 chr15 32793910 32793931 -68586590 + AT_rich Low_complexity Low_complexity 1 21 0 42652 35 22 1 chr15 32793989 32800014 -68580507 + L1PA3 LINE L1 1 6155 0 201 94 0 75 chr15 32800401 32800454 -68580067 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 286 309 28 45 chr15 32801827 32802063 -68578458 - LTR16A LTR ERVL -9 441 180 28 61 0 0 chr15 32802492 32802541 -68577980 + AT_rich Low_complexity Low_complexity 1 49 0 322 336 113 31 chr15 32802586 32802878 -68577643 - L1ME LINE L1 -454 5667 5352 38 0 0 0 chr15 32803108 32803146 -68577375 + AT_rich Low_complexity Low_complexity 1 38 0 261 0 0 0 chr15 32803477 32803506 -68577015 + (TA)n Simple_repeat Simple_repeat 2 30 0 322 290 0 21 chr15 32803506 32803599 -68576922 - L1MC4 LINE L1 -1339 6703 6613 2220 205 66 12 chr15 32804016 32804513 -68576008 - L1ME1 LINE L1 -15 6151 5628 1243 119 0 0 chr15 32804864 32805032 -68575489 - AluSg/x SINE Alu -24 288 121 2031 133 0 0 chr15 32805083 32805362 -68575159 - AluSg SINE Alu -31 279 1 22 35 0 0 chr15 32805367 32805396 -68575125 + AT_rich Low_complexity Low_complexity 1 29 0 333 348 7 15 chr15 32805514 32805649 -68574872 - L2 LINE L2 0 3313 3180 195 69 0 0 chr15 32805653 32805682 -68574839 + (CA)n Simple_repeat Simple_repeat 2 30 0 645 322 33 0 chr15 32805784 32805995 -68574526 - L2 LINE L2 -1175 2139 1922 198 0 0 0 chr15 32805996 32806018 -68574503 + (TA)n Simple_repeat Simple_repeat 2 23 0 326 252 135 0 chr15 32806053 32806164 -68574357 - MIR SINE MIR -35 227 102 2363 62 0 0 chr15 32806389 32806678 -68573843 - AluY SINE Alu -21 290 2 329 239 145 10 chr15 32806836 32807009 -68573512 - L1 LINE L1 -2212 3934 3743 1103 205 114 7 chr15 32807810 32808083 -68572438 - AluJo SINE Alu 0 302 1 29 28 0 0 chr15 32808346 32808382 -68572139 + AT_rich Low_complexity Low_complexity 1 36 0 929 92 23 0 chr15 32808677 32808808 -68571713 - L1PA8 LINE L1 -6 6166 6033 269 29 0 0 chr15 32808810 32808844 -68571677 + L1PA8 LINE L1 6005 6038 -134 30 27 0 0 chr15 32809695 32809732 -68570789 + AT_rich Low_complexity Low_complexity 1 37 0 223 304 116 27 chr15 32810373 32810485 -68570036 + L2 LINE L2 2896 3017 -255 186 284 15 45 chr15 32810676 32810743 -68569778 + L2 LINE L2 3249 3313 0 4769 175 27 15 chr15 32811313 32812827 -68567694 - L1PB4 LINE L1 -7 6149 4609 231 346 29 59 chr15 32813107 32813206 -68567315 + L2 LINE L2 2948 3043 -229 1588 181 10 16 chr15 32813206 32813520 -68567001 + AluJo SINE Alu 1 312 0 231 346 29 59 chr15 32813520 32813556 -68566965 + L2 LINE L2 3043 3079 -193 22 0 0 0 chr15 32814959 32814981 -68565540 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr15 32815377 32815404 -68565117 + AT_rich Low_complexity Low_complexity 1 27 0 2048 158 0 0 chr15 32816397 32816695 -68563826 - AluSg SINE Alu -12 298 1 478 286 71 43 chr15 32817012 32817292 -68563229 - Tigger8 DNA MER2_type -91 575 288 719 183 0 8 chr15 32817370 32817496 -68563025 + FLAM_C SINE Alu 1 125 -8 789 188 0 0 chr15 32817614 32817752 -68562769 + FLAM_C SINE Alu 6 143 0 2287 122 42 3 chr15 32818555 32818909 -68561612 + THE1C LTR MaLR 8 375 0 10122 113 48 13 chr15 32818909 32820435 -68560086 + THE1C-int LTR MaLR 1 1580 0 1828 114 16 2 chr15 32820435 32820745 -68559776 + THE1C LTR MaLR 1 375 0 993 233 37 0 chr15 32821154 32821369 -68559152 + MER58A DNA MER1_type 1 223 -1 23 0 0 0 chr15 32823090 32823113 -68557408 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr15 32825430 32825469 -68555052 + AT_rich Low_complexity Low_complexity 1 39 0 300 316 138 23 chr15 32825867 32826043 -68554478 + MIR SINE MIR 20 230 -32 2029 133 4 0 chr15 32826043 32826344 -68554177 + AluSg SINE Alu 1 302 0 300 316 138 23 chr15 32826344 32826382 -68554139 + MIR SINE MIR 230 262 0 608 268 0 6 chr15 32827342 32827521 -68553000 - MER104 DNA MER2_type -2 178 1 264 304 14 0 chr15 32827948 32828086 -68552435 - L1MEc LINE L1 -4620 1776 1637 2292 143 17 6 chr15 32828120 32828476 -68552045 - THE1B LTR MaLR 0 364 5 10322 118 14 26 chr15 32828476 32830075 -68550446 - THE1B-int LTR MaLR 0 1580 1 2414 116 17 8 chr15 32830075 32830436 -68550085 - THE1B LTR MaLR 0 364 1 1569 162 179 14 chr15 32830448 32830812 -68549709 + MSTA LTR MaLR 5 428 0 2766 264 14 7 chr15 32830992 32831711 -68548810 + L1MEc LINE L1 256 979 -5417 813 206 20 36 chr15 32831725 32831972 -68548549 + L1MB7 LINE L1 4987 5229 -917 7044 53 7 0 chr15 32831974 32833629 -68546892 - L1PA5 LINE L1 0 6154 4492 21897 79 8 0 chr15 32833630 32836545 -68543976 - L1PA5 LINE L1 -3210 2936 1 367 145 12 24 chr15 32836545 32836628 -68543893 + L1MB7 LINE L1 5221 5302 -844 * 3411 168 43 6 chr15 32836624 32838172 -68542349 + L1MA4 LINE L1 4644 6293 -7 1736 196 30 2 chr15 32838181 32838591 -68541930 + L1MB7 LINE L1 5276 5697 -487 340 212 12 0 chr15 32838580 32838665 -68541856 + L1MB7 LINE L1 6099 6184 0 * 1008 270 123 32 chr15 32838698 32839387 -68541134 + L1ME2 LINE L1 1064 1815 -4581 32035 30 2 1 chr15 32839389 32844022 -68536499 + L1PA3 LINE L1 1519 6155 0 6232 243 79 20 chr15 32844058 32845704 -68534817 + L1ME2 LINE L1 1816 3656 -2559 937 245 19 9 chr15 32845704 32845920 -68534601 - MER20 DNA MER1_type 0 219 2 6232 243 79 20 chr15 32845920 32846963 -68533558 + L1ME2 LINE L1 3656 4636 -1579 1183 181 81 40 chr15 32846961 32847259 -68533262 + L1ME2 LINE L1 5677 5986 -247 * 64 62 0 0 chr15 32847460 32847573 -68532948 + AT_rich Low_complexity Low_complexity 1 113 0 860 246 5 0 chr15 32848629 32848824 -68531697 - MLT1B LTR MaLR 0 390 195 485 110 40 0 chr15 32848861 32848961 -68531560 + GA-rich Low_complexity Low_complexity 1 104 0 760 201 63 17 chr15 32848961 32849135 -68531386 - MLT1B LTR MaLR -208 182 1 2178 118 48 28 chr15 32849810 32850167 -68530354 - THE1B LTR MaLR 0 364 1 10765 98 7 47 chr15 32850168 32851798 -68528723 - THE1B-int LTR MaLR -1 1579 14 2002 135 51 25 chr15 32851806 32852161 -68528360 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr15 32853645 32853667 -68526854 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 32854123 32854145 -68526376 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr15 32854976 32855007 -68525514 + AT_rich Low_complexity Low_complexity 1 31 0 346 289 16 16 chr15 32856340 32856461 -68524060 - L2 LINE L2 -9 3304 3184 1364 329 110 31 chr15 32856583 32857521 -68523000 - L2 LINE L2 -343 2971 1960 180 0 0 0 chr15 32857985 32858005 -68522516 + (A)n Simple_repeat Simple_repeat 1 20 0 999 306 246 24 chr15 32858240 32859076 -68521445 - L2 LINE L2 -3 3310 2302 350 256 84 118 chr15 32859964 32860355 -68520166 + L1ME4a LINE L1 5500 5877 -244 26 113 0 0 chr15 32860907 32861031 -68519490 + AT_rich Low_complexity Low_complexity 1 124 0 276 229 51 85 chr15 32861850 32861968 -68518553 - MER5A DNA MER1_type -15 174 61 * 299 280 51 59 chr15 32861863 32861981 -68518540 + MER5A DNA MER1_type 38 154 -35 3213 137 15 22 chr15 32862121 32862669 -68517852 - L1MC1 LINE L1 0 6333 5790 303 127 0 16 chr15 32862681 32862744 -68517777 + L1PA16 LINE L1 6098 6159 -7 668 175 69 8 chr15 32862758 32862903 -68517618 - L1MC1 LINE L1 -386 5798 5646 1126 175 47 59 chr15 32863999 32864339 -68516182 + MER33 DNA MER1_type 1 324 0 199 304 61 52 chr15 32865148 32865196 -68515325 - MIR SINE MIR -55 207 161 2710 26 0 6 chr15 32865196 32865508 -68515013 + AluY SINE Alu 1 310 -1 199 304 61 52 chr15 32865508 32865574 -68514947 - MIR SINE MIR -101 161 92 1626 84 0 0 chr15 32866136 32866338 -68514183 + AluY SINE Alu 89 290 -21 21 36 0 0 chr15 32866339 32866367 -68514154 + AT_rich Low_complexity Low_complexity 1 28 0 41 72 0 0 chr15 32867084 32867167 -68513354 + AT_rich Low_complexity Low_complexity 1 83 0 191 302 0 0 chr15 32868745 32868788 -68511733 - L2 LINE L2 -61 3211 3169 1410 130 9 9 chr15 32868823 32869054 -68511467 + L1PA16 LINE L1 6 236 -5639 * 15993 169 10 25 chr15 32869050 32872360 -68508161 + L1PA16 LINE L1 854 4173 -2288 4100 155 35 4 chr15 32872338 32873054 -68507467 + L1PA16 LINE L1 5734 6471 -10 * 5505 111 27 4 chr15 32873064 32875283 -68505238 - L1PA8 LINE L1 -12 6160 3723 8374 209 26 19 chr15 32875299 32877689 -68502832 - L1P4 LINE L1 -679 5487 3081 200 324 14 14 chr15 32878037 32878108 -68502413 + L2 LINE L2 3015 3085 -187 415 335 124 0 chr15 32878380 32878598 -68501923 + MIR SINE MIR 2 246 -16 238 367 17 8 chr15 32879735 32879855 -68500666 - L2 LINE L2 -234 3038 2918 693 260 82 43 chr15 32879875 32880179 -68500342 - L2 LINE L2 -685 2629 2314 503 264 32 53 chr15 32880269 32880515 -68500006 - HAL1 LINE L1 -865 1642 1402 21 57 0 0 chr15 32880520 32880555 -68499966 + AT_rich Low_complexity Low_complexity 1 35 0 461 333 63 44 chr15 32880760 32881030 -68499491 - HAL1 LINE L1 -1403 1104 830 276 53 0 0 chr15 32881448 32881486 -68499035 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6742 20 0 0 chr15 32881493 32882260 -68498261 - L1PA3 LINE L1 -29 6126 5360 2127 34 0 0 chr15 32882256 32882521 -68498000 + L1PA3 LINE L1 5077 5341 -805 * 1385 204 88 0 chr15 32882546 32882828 -68497693 - AluJb SINE Alu 0 307 3 244 300 7 71 chr15 32882989 32883129 -68497392 - L2 LINE L2 -985 2329 2199 1784 169 35 27 chr15 32885239 32885611 -68494910 - THE1C LTR MaLR 0 375 1 1638 187 47 7 chr15 32885780 32886080 -68494441 + AluJo SINE Alu 1 312 0 400 351 66 25 chr15 32886928 32887403 -68493118 - L2 LINE L2 -218 3054 2549 338 317 35 36 chr15 32887429 32887683 -68492838 + L1ME3A LINE L1 5618 5875 -295 24 32 0 0 chr15 32887727 32887758 -68492763 + AT_rich Low_complexity Low_complexity 1 31 0 637 176 46 0 chr15 32888017 32888125 -68492396 - Tigger1 DNA MER2_type 0 2418 2306 21 57 0 0 chr15 32888245 32888280 -68492241 + AT_rich Low_complexity Low_complexity 1 35 0 13647 132 10 40 chr15 32888293 32888739 -68491782 - Tigger1 DNA MER2_type -148 2270 1812 2126 122 17 0 chr15 32888739 32889035 -68491486 - AluSq SINE Alu -12 301 1 13647 132 10 40 chr15 32889035 32890927 -68489594 - Tigger1 DNA MER2_type -606 1812 2 1224 345 85 46 chr15 32891015 32891331 -68489190 - L2 LINE L2 -799 2515 2213 1347 237 106 38 chr15 32891331 32891804 -68488717 - MLT1D LTR MaLR 0 505 1 1224 345 85 46 chr15 32891804 32892773 -68487748 - L2 LINE L2 -1101 2213 1180 624 324 34 0 chr15 32892881 32893088 -68487433 + MIR SINE MIR 47 260 -2 186 150 0 0 chr15 32893257 32893297 -68487224 + (TA)n Simple_repeat Simple_repeat 2 41 0 205 51 51 0 chr15 32893336 32893375 -68487146 + (TA)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chr15 32893617 32893641 -68486880 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1394 193 25 102 chr15 32895588 32895874 -68484647 - MLT1A2 LTR MaLR -11 363 114 2155 146 75 39 chr15 32895874 32896285 -68484236 + MSTC LTR MaLR 3 428 0 1394 193 25 102 chr15 32896285 32896391 -68484130 - MLT1A2 LTR MaLR -260 114 1 633 221 33 44 chr15 32896588 32896769 -68483752 - L2 LINE L2 -17 3296 3118 30127 42 2 0 chr15 32898498 32903012 -68477509 + L1PA4 LINE L1 1636 6155 0 215 368 85 15 chr15 32904246 32904447 -68476074 + MIR SINE MIR 32 246 -16 256 296 0 0 chr15 32905999 32906070 -68474451 - MER112 DNA MER1_type -8 252 182 * 271 192 0 82 chr15 32906050 32906123 -68474398 - MER112 DNA MER1_type -193 67 1 2436 85 7 0 chr15 32906248 32906554 -68473967 - AluSc SINE Alu -1 308 1 439 266 22 7 chr15 32906735 32906874 -68473647 - MER69 DNA AcHobo -1 2525 2385 726 268 52 29 chr15 32907146 32907379 -68473142 + MIR SINE MIR 23 262 0 592 45 11 22 chr15 32907541 32907630 -68472891 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 385 198 0 0 chr15 32907852 32907938 -68472583 + L1PA13 LINE L1 1779 1864 -4923 229 229 38 15 chr15 32958133 32958264 -68422257 + (TA)n Simple_repeat Simple_repeat 2 135 0 326 296 226 0 chr15 32960219 32960378 -68420143 + MIR SINE MIR 68 262 0 343 270 36 45 chr15 32960990 32961101 -68419420 + L2 LINE L2 3154 3263 -9 195 359 55 23 chr15 32961680 32961808 -68418713 - L2 LINE L2 -16 3256 3125 886 148 7 203 chr15 32962305 32962473 -68418048 - MER77 LTR ERV1 -372 233 144 1897 153 0 10 chr15 32962473 32962768 -68417753 + AluSg SINE Alu 5 296 -14 886 148 7 203 chr15 32962768 32962889 -68417632 - MER77 LTR ERV1 -461 144 1 32 0 0 0 chr15 32963261 32963293 -68417228 + AT_rich Low_complexity Low_complexity 1 32 0 2007 142 0 0 chr15 32963427 32963736 -68416785 - AluSg SINE Alu -1 309 1 488 93 13 0 chr15 32965404 32965479 -68415042 + (TCCC)n Simple_repeat Simple_repeat 2 77 0 1673 176 40 7 chr15 32965479 32965829 -68414692 - AluJb SINE Alu 0 360 1 2100 136 7 0 chr15 32966027 32966335 -68414186 - AluSx SINE Alu -2 310 1 201 295 98 44 chr15 32966371 32966554 -68413967 + L2 LINE L2 3121 3313 0 190 153 34 0 chr15 32968258 32968317 -68412204 + (TATAA)n Simple_repeat Simple_repeat 5 65 0 354 242 0 0 chr15 32968449 32968511 -68412010 - AluS SINE Alu -238 63 2 620 105 0 0 chr15 32973443 32973529 -68406992 - AluJb SINE Alu -188 124 39 592 274 126 21 chr15 32973630 32973820 -68406701 + MER63A DNA MER1_type 1 210 0 278 277 0 24 chr15 32973870 32973953 -68406568 + Charlie7 DNA MER1_type 2 82 -2530 189 286 165 2 chr15 32974093 32974215 -68406306 - MIR SINE MIR -3 259 87 267 190 25 38 chr15 32974230 32974309 -68406212 + Charlie7 DNA MER1_type 2528 2605 -7 239 341 98 6 chr15 32974323 32974496 -68406025 + L2 LINE L2 2142 2330 -984 267 301 60 0 chr15 32974675 32974758 -68405763 + MIR3 SINE MIR 113 200 -8 25 31 0 0 chr15 32975457 32975489 -68405032 + AT_rich Low_complexity Low_complexity 1 32 0 2468 53 0 0 chr15 32979729 32980013 -68400508 + AluY SINE Alu 23 306 -5 481 224 87 12 chr15 32980874 32981035 -68399486 - MER82 DNA MER2_type -459 194 22 10198 123 5 19 chr15 32981035 32982707 -68397814 - L1P LINE L1 -3661 2485 838 234 243 71 0 chr15 32982714 32982784 -68397737 - L1ME LINE L1 -335 5827 5753 1897 133 0 48 chr15 32982793 32983109 -68397412 - AluSx SINE Alu -11 301 1 1549 256 48 31 chr15 32983109 32983586 -68396935 + MLT2B1 LTR ERVL 1 485 -35 728 289 84 22 chr15 32983594 32984179 -68396342 - L1M4 LINE L1 -2402 3744 3124 23 33 0 0 chr15 32984289 32984319 -68396202 + AT_rich Low_complexity Low_complexity 1 30 0 463 320 113 0 chr15 32984564 32984758 -68395763 - LTR16A LTR ERVL -234 216 1 2384 86 0 0 chr15 32985815 32986118 -68394403 - AluY SINE Alu 0 311 9 231 302 57 38 chr15 32990042 32990148 -68390373 + MIR SINE MIR 100 207 -55 216 0 0 0 chr15 32990188 32990212 -68390309 + (TTA)n Simple_repeat Simple_repeat 3 26 0 703 274 40 50 chr15 32990370 32990750 -68389771 + L1MC4a LINE L1 5507 5882 -1926 22 0 0 0 chr15 32990948 32990970 -68389551 + AT_rich Low_complexity Low_complexity 1 22 0 1884 143 26 26 chr15 32991746 32992053 -68388468 - AluSx SINE Alu -4 308 2 2225 171 29 17 chr15 32992122 32992542 -68387979 + MSTB LTR MaLR 1 425 -1 577 284 209 5 chr15 32992575 32992786 -68387735 + MIR SINE MIR 2 255 -7 545 238 31 12 chr15 32992816 32992976 -68387545 + MER103 DNA DNA 2 164 -2 686 290 28 9 chr15 32993260 32993477 -68387044 - MIR SINE MIR 0 262 42 13384 208 35 11 chr15 32993924 32997998 -68382523 - L1PA15-16 LINE L1 -851 6733 2536 326 128 0 0 chr15 32998000 32998047 -68382474 - L1PA15-16 LINE L1 -5135 2446 2400 795 322 59 39 chr15 32998052 32999067 -68381454 + L1ME4a LINE L1 3666 4700 -1446 304 309 12 0 chr15 32999069 32999150 -68381371 - L2 LINE L2 -3 3310 3229 328 335 121 13 chr15 32999334 32999558 -68380963 - MIR SINE MIR -10 252 5 4628 200 15 24 chr15 32999794 33000919 -68379602 - L1MA9 LINE L1 -39 6273 5159 525 257 109 32 chr15 33000905 33001243 -68379278 + L1ME4a LINE L1 5606 5969 -152 * 23 54 0 0 chr15 33001584 33001621 -68378900 + AT_rich Low_complexity Low_complexity 1 37 0 665 329 27 9 chr15 33002715 33002937 -68377584 - MIR SINE MIR -2 260 35 551 252 168 0 chr15 33003106 33003261 -68377260 - MER5A DNA MER1_type 0 189 9 2389 73 0 0 chr15 33003271 33003571 -68376950 + AluY SINE Alu 1 300 -11 204 40 0 0 chr15 33005950 33005975 -68374546 + (TG)n Simple_repeat Simple_repeat 2 26 0 29 47 0 0 chr15 33006374 33006417 -68374104 + AT_rich Low_complexity Low_complexity 1 43 0 633 259 0 6 chr15 33006568 33006726 -68373795 + FRAM SINE Alu 13 169 -7 22 80 0 0 chr15 33006778 33006828 -68373693 + AT_rich Low_complexity Low_complexity 1 50 0 369 324 51 41 chr15 33007045 33007411 -68373110 + L1MC4a LINE L1 6428 6797 -1034 830 261 11 11 chr15 33007434 33007622 -68372899 + MER5A DNA MER1_type 2 189 0 1206 220 133 78 chr15 33007623 33008300 -68372221 + L1MC5 LINE L1 7200 7913 -48 640 261 191 12 chr15 33008512 33008939 -68371582 - LTR33 LTR ERVL -4 517 1 1735 157 99 0 chr15 33010082 33010375 -68370146 - MER1B DNA MER1_type -17 322 1 552 308 9 51 chr15 33010695 33010909 -68369612 + MIR SINE MIR 2 206 -56 659 81 0 0 chr15 33011119 33011206 -68369315 - L1P2 LINE L1 -387 5767 5681 1178 70 0 0 chr15 33011211 33011369 -68369152 + L1PA5 LINE L1 5990 6147 -7 362 309 120 40 chr15 33011738 33011913 -68368608 + MIR3 SINE MIR 2 190 -18 21 0 0 0 chr15 33011974 33011995 -68368526 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr15 33013580 33013605 -68366916 + AT_rich Low_complexity Low_complexity 1 25 0 705 314 21 21 chr15 33014801 33015040 -68365481 + L2 LINE L2 2872 3110 -203 182 279 0 0 chr15 33015056 33015099 -68365422 - L2 LINE L2 -246 3067 3025 297 255 112 0 chr15 33015171 33015269 -68365252 + MIR SINE MIR 116 224 -38 339 25 0 0 chr15 33015426 33015466 -68365055 + (CA)n Simple_repeat Simple_repeat 2 41 0 216 67 0 0 chr15 33015466 33015496 -68365025 + (TC)n Simple_repeat Simple_repeat 1 30 0 301 285 36 66 chr15 33015693 33015830 -68364691 + L2 LINE L2 3181 3313 0 225 292 15 88 chr15 33017581 33017718 -68362803 + L2 LINE L2 2967 3093 -179 531 288 40 62 chr15 33017893 33018070 -68362451 + MIR SINE MIR 5 177 -85 23 33 0 0 chr15 33018626 33018656 -68361865 + AT_rich Low_complexity Low_complexity 1 30 0 235 281 140 41 chr15 33018747 33018918 -68361603 - MIR SINE MIR -55 207 20 213 310 56 0 chr15 33019389 33019460 -68361061 + L2 LINE L2 3229 3303 -10 1511 121 4 4 chr15 33019460 33019709 -68360812 + L1MA2 LINE L1 6056 6304 0 1165 327 74 40 chr15 33020269 33021070 -68359451 + ERVL LTR ERVL 4497 5324 -161 286 320 21 21 chr15 33021503 33021600 -68358921 + LTR67 LTR ERVL 98 194 -363 269 335 44 6 chr15 33021847 33022029 -68358492 + LTR67 LTR ERVL 352 540 -17 220 344 76 19 chr15 33022137 33022294 -68358227 + L2 LINE L2 2374 2539 -775 236 225 126 54 chr15 33022401 33022512 -68358009 + HAL1 LINE L1 2 120 -2387 661 24 0 0 chr15 33022534 33022618 -68357903 + AluY SINE Alu 220 303 -6 640 323 14 0 chr15 33022620 33022840 -68357681 + HAL1 LINE L1 136 358 -2149 321 254 35 35 chr15 33022849 33022991 -68357530 + HAL1 LINE L1 957 1098 -1409 1439 272 141 30 chr15 33023042 33024016 -68356505 + HAL1 LINE L1 380 1461 -1046 411 229 133 16 chr15 33024067 33024255 -68356266 + HAL1 LINE L1 2298 2507 0 279 133 0 0 chr15 33024760 33024805 -68355716 + (CATA)n Simple_repeat Simple_repeat 2 46 0 344 319 138 9 chr15 33025885 33026098 -68354423 - MIR SINE MIR 0 262 25 239 283 118 53 chr15 33026304 33026456 -68354065 - MIR3 SINE MIR -35 173 12 210 91 0 0 chr15 33026467 33026500 -68354021 + (TC)n Simple_repeat Simple_repeat 2 34 0 405 0 0 0 chr15 33026500 33026545 -68353976 + (CA)n Simple_repeat Simple_repeat 1 45 0 469 291 81 6 chr15 33027226 33027398 -68353123 - MIR3 SINE MIR -1 207 23 193 233 0 97 chr15 33027784 33027887 -68352634 - MIR SINE MIR -23 239 147 968 280 91 69 chr15 33027985 33028711 -68351810 + L1M4 LINE L1 3554 4325 -1821 2182 108 14 0 chr15 33028711 33029008 -68351513 + AluSg SINE Alu 3 303 -7 968 280 91 69 chr15 33029008 33029618 -68350903 + L1M4 LINE L1 4325 4920 -1226 223 24 24 49 chr15 33029852 33029893 -68350628 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1586 299 39 37 chr15 33029949 33030611 -68349910 + MER77 LTR ERV1 54 679 -4 288 272 54 0 chr15 33030944 33031036 -68349485 - MIR SINE MIR 0 262 166 191 250 0 0 chr15 33031646 33031686 -68348835 - MIR3 SINE MIR -37 171 132 2321 156 0 0 chr15 33031691 33032057 -68348464 - MER47A DNA MER2_type 0 366 1 1385 237 30 20 chr15 33032067 33032463 -68348058 + L2 LINE L2 1267 1666 -1648 704 305 109 45 chr15 33032560 33032980 -68347541 + L2 LINE L2 2867 3313 0 24 0 0 0 chr15 33033247 33033271 -68347250 + AT_rich Low_complexity Low_complexity 1 24 0 255 263 0 0 chr15 33033401 33033458 -68347063 + MIR3 SINE MIR 149 205 -3 344 287 268 19 chr15 33035122 33035331 -68345190 - MIR SINE MIR 0 262 2 21 36 0 0 chr15 33035478 33035506 -68345015 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr15 33035752 33035776 -68344745 + AT_rich Low_complexity Low_complexity 1 24 0 1537 114 26 30 chr15 33035863 33036134 -68344387 - L1MA5A LINE L1 -6 6291 6022 868 315 44 29 chr15 33036777 33037259 -68343262 + LTR16C LTR ERVL 1 489 -2 267 175 0 0 chr15 33037417 33037474 -68343047 + (TA)n Simple_repeat Simple_repeat 2 58 0 1287 166 24 142 chr15 33038367 33038705 -68341816 + AluJo SINE Alu 1 298 -4 2375 169 37 11 chr15 33039229 33039684 -68340837 + MLT1C LTR MaLR 1 467 0 304 388 7 41 chr15 33039716 33039863 -68340658 + MIR3 SINE MIR 6 147 -61 22 0 0 0 chr15 33040078 33040100 -68340421 + AT_rich Low_complexity Low_complexity 1 22 0 30 69 0 0 chr15 33042738 33042796 -68337725 + AT_rich Low_complexity Low_complexity 1 58 0 207 69 0 0 chr15 33042877 33042906 -68337615 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 429 20 0 0 chr15 33042905 33042955 -68337566 + (TA)n Simple_repeat Simple_repeat 1 50 0 1936 154 51 54 chr15 33043337 33043766 -68336755 + MSTA LTR MaLR 1 428 0 9318 175 19 4 chr15 33043794 33045398 -68335123 + MSTA-int LTR MaLR 15 1642 -9 854 121 38 0 chr15 33045417 33045549 -68334972 + MSTA LTR MaLR 1 137 -291 2264 96 0 0 chr15 33046166 33046448 -68334073 - AluSg SINE Alu -28 282 1 9616 134 34 9 chr15 33046449 33047996 -68332525 - Tigger1 DNA MER2_type -832 1586 1 255 320 0 0 chr15 33048000 33048075 -68332446 + L3 LINE CR1 1294 1368 -209 650 296 56 14 chr15 33048177 33048390 -68332131 - MIR SINE MIR -13 249 28 253 261 23 54 chr15 33049500 33049630 -68330891 + L1MEd LINE L1 3 128 -5991 1890 146 55 25 chr15 33049916 33050280 -68330241 - THE1C LTR MaLR 0 375 1 601 274 64 66 chr15 33050376 33050784 -68329737 + L1MEd LINE L1 520 926 -5193 22 35 0 0 chr15 33051308 33051337 -68329184 + AT_rich Low_complexity Low_complexity 1 29 0 4851 106 24 8 chr15 33051527 33052288 -68328233 - L1MA5A LINE L1 -2 6295 5523 899 129 65 0 chr15 33055109 33055248 -68325273 - Tigger7 DNA MER2_type -1 2486 2339 * 1540 225 58 6 chr15 33055243 33055568 -68324953 - Tigger7 DNA MER2_type -389 344 3 1370 255 42 42 chr15 33056388 33056819 -68323702 + LTR40c LTR ERVL 35 465 0 224 333 122 8 chr15 33056823 33056946 -68323575 + L2 LINE L2 3133 3269 -3 438 20 0 0 chr15 33059990 33060041 -68320480 + (CA)n Simple_repeat Simple_repeat 2 52 0 222 191 0 0 chr15 33063655 33063702 -68316819 + CT-rich Low_complexity Low_complexity 2 48 0 770 183 118 0 chr15 33064611 33064780 -68315741 + MER53 DNA DNA 1 189 0 2273 93 0 0 chr15 33064812 33065091 -68315430 + AluSc SINE Alu 3 281 -28 253 274 132 19 chr15 33065534 33065640 -68314881 - MIR SINE MIR -11 251 134 40 0 0 0 chr15 33066567 33066607 -68313914 + AT_rich Low_complexity Low_complexity 1 40 0 181 128 0 77 chr15 33066809 33066848 -68313673 + MER5C DNA MER1_type 280 315 -9 12570 238 43 26 chr15 33068279 33069020 -68311501 + L1PA16 LINE L1 2190 2917 -4687 392 18 18 0 chr15 33069020 33069075 -68311446 + L1PA2 LINE L1 6100 6155 0 12570 238 43 26 chr15 33069075 33070079 -68310442 + L1PA16 LINE L1 2917 3902 -3702 1756 123 0 15 chr15 33070079 33070340 -68310181 + AluSc SINE Alu 44 300 -9 12570 238 43 26 chr15 33070340 33070950 -68309571 + L1PA16 LINE L1 3902 4500 -3104 459 35 0 0 chr15 33070950 33071007 -68309514 + (GAAA)n Simple_repeat Simple_repeat 2 58 0 12570 238 43 26 chr15 33071007 33071068 -68309453 + L1PA16 LINE L1 4500 4558 -3046 1447 192 6 45 chr15 33071068 33071381 -68309140 + AluJb SINE Alu 3 303 -9 12570 238 43 26 chr15 33071381 33073649 -68306872 + L1PA16 LINE L1 4558 6922 -682 3286 147 21 2 chr15 33073691 33074261 -68306260 + L1PA16 LINE L1 7020 7600 -4 481 118 11 11 chr15 33074314 33074407 -68306114 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 2231 71 3 0 chr15 33075351 33075633 -68304888 + AluY SINE Alu 1 283 -28 216 0 0 0 chr15 33075642 33075666 -68304855 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 2071 137 3 0 chr15 33075699 33075999 -68304522 - AluSg SINE Alu -9 301 1 456 268 78 17 chr15 33076130 33076144 -68304377 + MER46C DNA MER2_type 147 159 -179 1627 189 85 32 chr15 33076144 33076520 -68304001 - MSTD LTR MaLR 0 396 1 456 268 78 17 chr15 33076520 33076684 -68303837 + MER46C DNA MER2_type 159 336 -2 5709 161 8 73 chr15 33076739 33077971 -68302550 - L1P LINE L1 -1144 5002 3851 653 215 0 0 chr15 33077967 33078111 -68302410 + L1P LINE L1 5012 5155 -991 * 21 0 0 0 chr15 33079667 33079688 -68300833 + AT_rich Low_complexity Low_complexity 1 21 0 310 277 0 0 chr15 33079714 33079797 -68300724 + (CATA)n Simple_repeat Simple_repeat 2 84 0 186 133 0 0 chr15 33081861 33081891 -68298630 + (GGA)n Simple_repeat Simple_repeat 3 32 0 1427 242 60 96 chr15 33082523 33083189 -68297332 - MER21B LTR ERV1 -124 739 98 237 290 29 80 chr15 33083162 33083266 -68297255 - MER77 LTR ERV1 -408 197 100 * 1487 94 70 0 chr15 33083266 33083479 -68297042 - MER30 DNA MER1_type 0 230 3 237 290 29 80 chr15 33083479 33083512 -68297009 - MER77 LTR ERV1 -505 100 67 2417 70 0 3 chr15 33084465 33084763 -68295758 - AluY SINE Alu -14 297 1 228 178 44 0 chr15 33084767 33084812 -68295709 - MER103 DNA DNA -114 52 6 267 287 64 53 chr15 33085298 33085392 -68295129 - L2 LINE L2 -37 3235 3141 302 231 107 41 chr15 33085731 33085900 -68294621 + Charlie7 DNA MER1_type 2432 2611 -1 258 331 31 23 chr15 33086050 33086180 -68294341 + L2 LINE L2 2657 2787 -527 534 236 87 35 chr15 33087087 33087316 -68293205 + MER112 DNA MER1_type 8 248 -12 180 374 43 22 chr15 33087338 33087568 -68292953 - L2 LINE L2 -2510 804 570 1214 106 11 17 chr15 33087609 33087788 -68292733 - AluSg/x SINE Alu -7 305 128 808 188 12 41 chr15 33087790 33087960 -68292561 + MER5A DNA MER1_type 1 165 -24 24 0 0 0 chr15 33089058 33089082 -68291439 + AT_rich Low_complexity Low_complexity 1 24 0 621 219 102 16 chr15 33089089 33089276 -68291245 + L1ME3A LINE L1 5935 6137 -33 542 323 121 27 chr15 33089539 33090059 -68290462 - L2 LINE L2 -28 3285 2710 216 313 0 0 chr15 33090225 33090289 -68290232 + MIR SINE MIR 47 110 -152 185 226 0 0 chr15 33090308 33090339 -68290182 + L2 LINE L2 3263 3293 -20 257 286 0 41 chr15 33090776 33090874 -68289647 + L1MC/D LINE L1 5723 5793 -566 507 261 171 24 chr15 33091312 33091523 -68288998 - MIR SINE MIR -9 253 12 2134 104 101 18 chr15 33091767 33092103 -68288418 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr15 33092676 33092699 -68287822 + AT_rich Low_complexity Low_complexity 1 23 0 484 233 167 0 chr15 33093679 33093799 -68286722 + MER3 DNA MER1_type 70 209 0 372 233 0 0 chr15 33093799 33093829 -68286692 - MER3 DNA MER1_type -162 47 18 186 359 0 0 chr15 33093833 33093886 -68286635 - MER5A DNA MER1_type -74 115 63 2648 32 7 3 chr15 33094000 33094310 -68286211 + AluY SINE Alu 1 311 0 2229 108 3 0 chr15 33094332 33094627 -68285894 + AluSg SINE Alu 1 296 -14 2130 126 3 10 chr15 33096090 33096391 -68284130 + AluSx SINE Alu 1 299 -13 1521 159 70 0 chr15 33096708 33096978 -68283543 + MSTA LTR MaLR 140 428 0 1626 262 58 20 chr15 33098655 33099755 -68280766 + L1MEc LINE L1 52 1273 -5123 2235 62 7 13 chr15 33100174 33100480 -68280041 - L1PA8 LINE L1 -1 6171 5868 386 310 108 38 chr15 33100886 33101173 -68279348 + L2 LINE L2 2870 3176 -137 437 209 12 12 chr15 33101218 33101304 -68279217 + MER58 DNA MER1_type 129 2419 -1 213 200 44 0 chr15 33101305 33101350 -68279171 + L2 LINE L2 3189 3235 -78 1433 151 73 4 chr15 33101353 33101612 -68278909 + MLT1B LTR MaLR 1 277 -113 21 36 0 0 chr15 33102297 33102325 -68278196 + AT_rich Low_complexity Low_complexity 1 28 0 237 261 25 109 chr15 33102530 33102649 -68277872 + L2 LINE L2 3146 3254 -18 689 344 138 32 chr15 33102668 33103712 -68276809 + L2 LINE L2 924 2078 -1236 726 220 154 14 chr15 33103755 33103969 -68276552 - MLT1C LTR MaLR 0 467 224 467 344 41 12 chr15 33104051 33104295 -68276226 + L2 LINE L2 2830 3080 -192 210 310 0 0 chr15 33104410 33104468 -68276053 + L2 LINE L2 3251 3308 -5 4690 110 10 21 chr15 33105018 33105737 -68274784 - Tigger1 DNA MER2_type -5 2413 1703 21 0 0 0 chr15 33109476 33109497 -68271024 + AT_rich Low_complexity Low_complexity 1 21 0 229 0 0 0 chr15 33110268 33110294 -68270227 + L1MA3 LINE L1 5359 5384 -916 3382 169 27 36 chr15 33110295 33110541 -68269980 + L1MA3 LINE L1 5572 5819 -486 2147 137 3 0 chr15 33110541 33110848 -68269673 + AluSx SINE Alu 5 312 0 3382 169 27 36 chr15 33110848 33111342 -68269179 + L1MA3 LINE L1 5819 6305 0 267 311 11 0 chr15 33111472 33111562 -68268959 + MARNA DNA Mariner 300 390 -196 588 216 133 4 chr15 33111563 33111728 -68268793 + L1MB8 LINE L1 5701 5883 -287 205 233 12 12 chr15 33111760 33111846 -68268675 + GA-rich Low_complexity Low_complexity 1 86 0 267 31 0 0 chr15 33112919 33112951 -68267570 + (TAG)n Simple_repeat Simple_repeat 1 32 0 302 343 140 7 chr15 33113768 33113911 -68266610 - MIR3 SINE MIR -10 198 37 226 200 0 80 chr15 33114342 33114392 -68266129 - L2 LINE L2 -2 3311 3266 24 0 0 0 chr15 33114836 33114860 -68265661 + AT_rich Low_complexity Low_complexity 1 24 0 1333 205 92 16 chr15 33116037 33116354 -68264167 - MER58B DNA MER1_type 0 341 1 1792 183 8 45 chr15 33117610 33117987 -68262534 + MLT1A1 LTR MaLR 1 363 -2 497 316 64 13 chr15 33118020 33118254 -68262267 - L2 LINE L2 -40 3232 2987 204 152 0 22 chr15 33121595 33121641 -68258880 + A-rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr15 33122499 33122521 -68258000 + AT_rich Low_complexity Low_complexity 1 22 0 272 224 0 0 chr15 33122745 33122794 -68257727 + L1PA12 LINE L1 1268 1316 -6265 891 299 40 24 chr15 33122801 33123176 -68257345 + L1PA12 LINE L1 1005 1385 -6196 489 282 48 48 chr15 33123376 33123585 -68256936 + L1PA12 LINE L1 1152 1360 -6221 1828 155 55 42 chr15 33123586 33123986 -68256535 + MSTA LTR MaLR 1 405 -23 1811 213 70 25 chr15 33124321 33124805 -68255716 - Charlie1b DNA MER1_type 0 523 18 344 317 49 7 chr15 33125072 33125214 -68255307 + L1M4 LINE L1 3314 3461 -2685 1164 296 9 15 chr15 33125378 33125837 -68254684 + L1M4 LINE L1 3481 3936 -2210 515 271 156 25 chr15 33126011 33126233 -68254288 - MIR SINE MIR -11 251 3 198 333 0 48 chr15 33126259 33126343 -68254178 - MER5B DNA MER1_type -1 177 98 270 361 31 0 chr15 33126368 33126465 -68254056 + MER5B DNA MER1_type 20 119 -59 7092 174 64 8 chr15 33127718 33130009 -68250512 - L1PBa LINE L1 -4293 2570 6 918 150 19 6 chr15 33130027 33130187 -68250334 - MLT1A2 LTR MaLR -212 162 1 4995 233 47 55 chr15 33130695 33131442 -68249079 + L1M1 LINE L1 2183 2935 -4630 3967 70 10 2 chr15 33131442 33131960 -68248561 + L1PA7 LINE L1 5632 6153 -1 4995 233 47 55 chr15 33131960 33133550 -68246971 + L1M1 LINE L1 2935 4457 -3108 1839 176 10 3 chr15 33133550 33133846 -68246675 + AluJb SINE Alu 1 298 -14 4995 233 47 55 chr15 33133846 33134271 -68246250 + L1M1 LINE L1 4457 4884 -2681 183 42 0 0 chr15 33134550 33134574 -68245947 + (A)n Simple_repeat Simple_repeat 1 24 0 623 206 0 29 chr15 33134884 33135020 -68245501 + FLAM_A SINE Alu 1 132 -1 21 82 0 0 chr15 33135753 33135802 -68244719 + AT_rich Low_complexity Low_complexity 1 49 0 267 92 98 12 chr15 33135832 33135996 -68244525 + (TA)n Simple_repeat Simple_repeat 1 178 0 380 140 44 7 chr15 33136062 33136198 -68244323 + (TA)n Simple_repeat Simple_repeat 1 141 0 288 282 94 43 chr15 33136555 33136672 -68243849 - MIR SINE MIR -12 250 128 188 279 0 0 chr15 33136925 33136968 -68243553 - L3 LINE CR1 -5 1572 1530 326 273 72 15 chr15 33136968 33137068 -68243453 - MIR3 SINE MIR -100 108 16 2230 77 0 28 chr15 33137068 33137355 -68243166 - AluSq SINE Alu -8 305 27 326 273 72 15 chr15 33137355 33137367 -68243154 - MIR3 SINE MIR -192 16 6 1085 221 70 62 chr15 33137896 33138254 -68242267 + MLT1A1 LTR MaLR 1 361 -4 242 328 0 0 chr15 33139450 33139511 -68241010 - L3 LINE CR1 -1 1576 1516 396 0 0 0 chr15 33139729 33139773 -68240748 + (TG)n Simple_repeat Simple_repeat 2 45 0 3034 215 86 16 chr15 33139785 33141179 -68239342 - L1MA9 LINE L1 -149 6163 4681 278 194 113 8 chr15 33141281 33141405 -68239116 + L1ME3A LINE L1 4298 4434 -1712 186 43 0 0 chr15 33141422 33141445 -68239076 + (T)n Simple_repeat Simple_repeat 1 23 0 616 207 201 17 chr15 33141999 33142173 -68238348 - MIR SINE MIR -43 219 14 1059 132 6 19 chr15 33142490 33142697 -68237824 - AluSg/x SINE Alu 0 332 128 571 225 44 0 chr15 33142755 33142915 -68237606 + L1ME3A LINE L1 4463 4629 -1517 350 232 211 0 chr15 33142967 33143062 -68237459 + MIR SINE MIR 43 157 -105 3808 82 2 0 chr15 33143062 33143572 -68236949 - L1PA8 LINE L1 -9 6163 5653 723 258 60 25 chr15 33143895 33144259 -68236262 + L1ME3A LINE L1 5009 5385 -761 346 347 12 18 chr15 33144688 33144855 -68235666 + LTR16C LTR ERVL 326 491 0 546 251 63 48 chr15 33144855 33145126 -68235395 + L1ME3A LINE L1 5381 5655 -515 442 276 0 9 chr15 33145128 33145233 -68235288 + MER69A DNA AcHobo 2 105 -72 438 185 23 121 chr15 33145274 33145447 -68235074 + L1ME3A LINE L1 5799 5954 -216 532 130 0 43 chr15 33145574 33145666 -68234855 + AluS SINE Alu 1 88 -225 909 286 114 21 chr15 33145780 33146307 -68234214 + Charlie7 DNA MER1_type 91 666 -1946 535 266 69 17 chr15 33146327 33146500 -68234021 + MIR SINE MIR 57 238 -24 378 312 65 42 chr15 33147559 33147822 -68232699 + L1MC/D LINE L1 5297 5565 -794 220 272 57 32 chr15 33148038 33148151 -68232370 + MIR SINE MIR 63 140 -68 315 276 98 30 chr15 33150347 33150586 -68229935 + L1ME3A LINE L1 1329 1550 -5397 2243 102 0 3 chr15 33150586 33150871 -68229650 + AluSc SINE Alu 1 284 -25 402 21 0 0 chr15 33150873 33150920 -68229601 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 315 276 98 30 chr15 33150920 33151040 -68229481 + L1ME3A LINE L1 1550 1848 -5099 1047 270 74 40 chr15 33151159 33151616 -68228905 + L1ME3A LINE L1 3614 4054 -2903 2560 147 26 0 chr15 33151616 33152031 -68228490 - MSTA LTR MaLR 0 428 3 1047 270 74 40 chr15 33152031 33152595 -68227926 + L1ME3A LINE L1 4054 4714 -2243 1443 196 117 36 chr15 33152595 33153014 -68227507 - MSTB2 LTR MaLR -4 453 1 1047 270 74 40 chr15 33153014 33153097 -68227424 + L1ME3A LINE L1 4714 4793 -2164 27 0 0 0 chr15 33153225 33153252 -68227269 + AT_rich Low_complexity Low_complexity 1 27 0 1639 150 31 3 chr15 33153258 33153552 -68226969 - L1MC1 LINE L1 -6 6327 6026 323 246 115 25 chr15 33153564 33153686 -68226835 + L1M4 LINE L1 2981 3113 -3033 2235 109 0 0 chr15 33153729 33154023 -68226498 - AluSx SINE Alu -18 294 1 3227 133 37 2 chr15 33154063 33154628 -68225893 - L1MC1 LINE L1 -357 5976 5392 385 298 87 0 chr15 33154650 33154858 -68225663 + L1ME3A LINE L1 4808 5033 -1924 1325 239 119 41 chr15 33155032 33155549 -68224972 + L1ME3A LINE L1 5606 6081 -900 2182 111 0 0 chr15 33155549 33155838 -68224683 + AluSg SINE Alu 1 289 -21 1325 239 119 41 chr15 33155838 33156577 -68223944 + L1ME3A LINE L1 6081 6978 -3 1820 182 44 21 chr15 33157242 33157626 -68222895 + MLT2C1 LTR ERVL 5 397 0 5202 147 22 4 chr15 33160903 33160987 -68219534 + L1PA16 LINE L1 5171 5252 -914 2122 139 3 0 chr15 33160987 33161290 -68219231 + AluSx SINE Alu 1 304 -8 5202 147 22 4 chr15 33161290 33162187 -68218334 + L1PA16 LINE L1 5252 6166 0 1212 207 54 59 chr15 33162433 33162825 -68217696 - MLT1B LTR MaLR 0 390 1 207 246 49 16 chr15 33163406 33163467 -68217054 + L2 LINE L2 3250 3312 -1 1382 232 73 62 chr15 33163738 33164272 -68216249 - LTR55 LTR ERV -8 540 1 224 122 24 0 chr15 33164718 33164759 -68215762 + (CA)n Simple_repeat Simple_repeat 1 42 0 416 169 48 0 chr15 33165237 33165320 -68215201 + MLT1K LTR MaLR 499 585 -3 2406 139 44 7 chr15 33165671 33166080 -68214441 + MSTA LTR MaLR 5 428 0 214 419 7 7 chr15 33166296 33166432 -68214089 - L2 LINE L2 -226 3046 2911 2377 92 7 0 chr15 33166502 33166808 -68213713 + AluY SINE Alu 1 308 -3 339 239 33 0 chr15 33167339 33167431 -68213090 - MLT1J2 LTR MaLR -289 161 67 234 0 0 0 chr15 33167751 33167777 -68212744 + (TA)n Simple_repeat Simple_repeat 2 27 0 456 173 0 0 chr15 33168386 33168467 -68212054 + Tigger5 DNA MER2_type 2238 2318 -5 213 328 8 25 chr15 33168528 33168650 -68211871 + (TATATG)n Simple_repeat Simple_repeat 6 125 0 4881 218 50 7 chr15 33169434 33170800 -68209721 - L1M4c LINE L1 -1930 4452 3028 852 225 225 27 chr15 33170811 33171140 -68209381 - MSTD LTR MaLR -2 394 1 4409 168 27 32 chr15 33171141 33172526 -68207995 - L1 LINE L1 -3360 3022 1630 1256 181 71 7 chr15 33172542 33172873 -68207648 - L1M4c LINE L1 -4526 1857 1174 * 5486 136 14 7 chr15 33172868 33174169 -68206352 + L1PA13 LINE L1 4850 6158 -5 3591 186 99 41 chr15 33174177 33175184 -68205337 - L1M4c LINE L1 -5299 1085 20 193 364 45 8 chr15 33175654 33175786 -68204735 - L3 LINE CR1 -740 837 701 20053 159 33 23 chr15 33178565 33180094 -68200427 - L1MA3 LINE L1 -344 7380 5867 2244 108 3 0 chr15 33180094 33180410 -68200111 - AluSp SINE Alu 0 313 1 20053 159 33 23 chr15 33180410 33186163 -68194358 - L1MA3 LINE L1 -1857 5867 16 1361 184 61 65 chr15 33186496 33186789 -68193732 + AluJo SINE Alu 1 292 -20 22 0 0 0 chr15 33186789 33186811 -68193710 + AT_rich Low_complexity Low_complexity 1 22 0 1162 215 62 26 chr15 33187280 33187619 -68192902 - MER74B LTR ERVL -68 554 204 353 113 0 0 chr15 33187695 33187748 -68192773 - MER74B LTR ERVL -569 53 1 376 347 17 29 chr15 33187748 33187921 -68192600 - MIR3 SINE MIR -22 186 16 27 0 0 0 chr15 33188047 33188074 -68192447 + AT_rich Low_complexity Low_complexity 1 27 0 260 337 28 50 chr15 33189169 33189350 -68191171 + MER5B DNA MER1_type 1 177 -1 1478 201 7 24 chr15 33190271 33190559 -68189962 - AluJb SINE Alu -17 295 13 2403 74 7 0 chr15 33190790 33191089 -68189432 - AluY SINE Alu -10 301 1 285 325 146 35 chr15 33192501 33193105 -68187416 + L2 LINE L2 1805 2475 -839 4507 54 123 149 chr15 33193324 33194172 -68186349 + LTR12 LTR ERV1 1 826 0 261 336 19 101 chr15 33194231 33194499 -68186022 + L2 LINE L2 3020 3265 -7 365 187 54 35 chr15 33194631 33194751 -68185770 + MIR SINE MIR 18 139 -69 585 251 54 49 chr15 33194877 33195080 -68185441 + MIR SINE MIR 46 249 -13 429 129 0 0 chr15 33198194 33198264 -68182257 + (CATA)n Simple_repeat Simple_repeat 2 71 0 34 0 0 0 chr15 33200081 33200115 -68180406 + AT_rich Low_complexity Low_complexity 1 34 0 1278 230 48 13 chr15 33200115 33200428 -68180093 - MER58B DNA MER1_type -17 324 1 186 297 141 0 chr15 33200488 33200552 -68179969 + MIR3 SINE MIR 105 177 -31 361 366 67 13 chr15 33200824 33201122 -68179399 - LTR16C LTR ERVL -18 473 160 2547 71 0 0 chr15 33201130 33201441 -68179080 - AluY SINE Alu 0 311 1 601 306 81 14 chr15 33202904 33203126 -68177395 + MIR SINE MIR 2 238 -24 1286 236 90 48 chr15 33203144 33203340 -68177181 + MLT1D LTR MaLR 1 187 -318 2275 45 13 36 chr15 33203340 33203649 -68176872 + AluY SINE Alu 3 304 -7 1286 236 90 48 chr15 33203649 33203670 -68176851 + MLT1D LTR MaLR 187 206 -299 288 0 0 0 chr15 33203670 33203702 -68176819 + (CA)n Simple_repeat Simple_repeat 1 32 0 1286 236 90 48 chr15 33203702 33203961 -68176560 + MLT1D LTR MaLR 206 498 -7 1860 144 22 0 chr15 33203977 33204289 -68176232 - AluSx SINE Alu 0 319 2 1108 255 76 58 chr15 33204299 33204761 -68175760 - MLT1F1 LTR MaLR -9 558 89 615 129 0 0 chr15 33205086 33205171 -68175350 + AluY SINE Alu 1 85 -225 3912 165 28 12 chr15 33205273 33205545 -68174976 + L1MA7 LINE L1 5513 5779 -512 294 29 0 0 chr15 33205545 33205580 -68174941 + (CA)n Simple_repeat Simple_repeat 2 36 0 3912 165 28 12 chr15 33205580 33206072 -68174449 + L1MA7 LINE L1 5779 6289 -2 2062 207 21 52 chr15 33206250 33206654 -68173867 + MLT1D LTR MaLR 1 387 -118 2217 133 16 21 chr15 33206654 33207031 -68173490 - THE1C LTR MaLR 0 375 1 2062 207 21 52 chr15 33207031 33207147 -68173374 + MLT1D LTR MaLR 387 505 0 902 247 0 0 chr15 33207397 33207575 -68172946 + MER45A DNA AcHobo 1 178 0 204 209 0 0 chr15 33208371 33208414 -68172107 + A-rich Low_complexity Low_complexity 2 44 0 364 286 0 0 chr15 33208758 33208877 -68171644 + MER113 DNA MER1_type? 4 122 -399 274 306 152 84 chr15 33209092 33209415 -68171106 + L2 LINE L2 2928 3272 0 506 206 55 34 chr15 33211379 33211574 -68168947 - LTR45B LTR ERV1 0 489 331 230 188 0 21 chr15 33211621 33211669 -68168852 - MER72 LTR ERV1 -246 476 430 315 122 0 0 chr15 33211988 33212037 -68168484 + (CA)n Simple_repeat Simple_repeat 2 50 0 458 220 8 83 chr15 33212040 33212172 -68168349 + L2 LINE L2 3192 3313 0 948 18 0 0 chr15 33216660 33216771 -68163750 - L1PA5 LINE L1 -3 6151 6041 826 316 105 36 chr15 33217629 33218332 -68162189 + L2 LINE L2 2511 3255 -58 351 243 164 0 chr15 33220763 33220903 -68159618 + MER3 DNA MER1_type 47 209 0 776 155 0 39 chr15 33222262 33222391 -68158130 - FLAM_A SINE Alu -9 124 1 1829 168 28 15 chr15 33222519 33222911 -68157610 - L1PA11 LINE L1 0 6174 5778 8664 134 14 1 chr15 33223016 33224502 -68156019 - L1PA11 LINE L1 -850 5296 3792 542 275 16 56 chr15 33224606 33224883 -68155638 + MIR3 SINE MIR 1 252 -10 209 267 50 17 chr15 33225423 33225483 -68155038 + L2 LINE L2 3251 3312 -1 663 287 87 33 chr15 33226499 33227027 -68153494 + L1ME LINE L1 4499 4997 -1165 1966 225 113 12 chr15 33227027 33227542 -68152979 - MLT1F1 LTR MaLR 0 567 1 663 287 87 33 chr15 33227542 33227967 -68152554 + L1ME LINE L1 4997 5506 -656 17805 157 44 6 chr15 33228070 33231332 -68149189 + L1MA2 LINE L1 282 3667 -3898 809 150 7 0 chr15 33231395 33231548 -68148973 + L1MA2 LINE L1 4837 4990 -2575 9852 92 5 3 chr15 33231550 33233049 -68147472 + L1PA7 LINE L1 2324 3825 -2321 11239 84 9 34 chr15 33233163 33235592 -68144929 + L1PA7 LINE L1 3743 6154 0 3713 159 44 7 chr15 33235592 33236338 -68144183 + L1MA2 LINE L1 4980 5753 -1812 * 10826 198 40 17 chr15 33236334 33240009 -68140512 - L1PB1 LINE L1 -8 6859 3093 2202 99 20 3 chr15 33240119 33240421 -68140100 - AluSq SINE Alu -6 307 1 2253 192 2 2 chr15 33240421 33240879 -68139642 - L1 LINE L1 -3369 2777 2320 * 2649 179 8 4 chr15 33240865 33241384 -68139137 - L1PB1 LINE L1 -4951 1912 1392 510 290 5 10 chr15 33241381 33241574 -68138947 - L1PB1 LINE L1 -6666 197 6 * 6220 140 31 2 chr15 33241596 33243521 -68137000 + L1MA2 LINE L1 5736 7716 -7 669 263 47 38 chr15 33243619 33243855 -68136666 - MLT1K LTR MaLR -209 379 142 260 30 0 0 chr15 33244537 33244570 -68135951 + L1MA1 LINE L1 5963 5995 -307 344 266 184 0 chr15 33244929 33245038 -68135483 + MER94 DNA DNA 5 133 -1 2308 106 0 0 chr15 33245577 33245879 -68134642 - AluSg SINE Alu -8 302 1 15773 183 33 12 chr15 33246558 33247132 -68133389 - L1PA15 LINE L1 -13 7590 7030 2178 128 73 14 chr15 33247132 33247476 -68133045 - THE1B LTR MaLR 0 364 1 11934 93 5 0 chr15 33247476 33249048 -68131473 - THE1B-int LTR MaLR 0 1580 1 2044 121 92 15 chr15 33249048 33249386 -68131135 - THE1B LTR MaLR 0 364 1 15773 183 33 12 chr15 33249386 33252957 -68127564 - L1PA15 LINE L1 -573 7030 3538 2067 125 3 3 chr15 33252957 33253245 -68127276 + AluSx SINE Alu 1 288 -24 15773 183 33 12 chr15 33253245 33253856 -68126665 - L1PA15 LINE L1 -4065 3538 2942 1761 152 76 0 chr15 33253856 33254146 -68126375 - AluSx SINE Alu 0 312 1 15773 183 33 12 chr15 33254146 33254548 -68125973 - L1PA15 LINE L1 -4661 2942 2313 249 83 0 0 chr15 33255733 33255769 -68124752 + (CA)n Simple_repeat Simple_repeat 2 37 0 180 97 0 0 chr15 33256929 33256960 -68123561 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 256 316 123 19 chr15 33257900 33258055 -68122466 + MIR3 SINE MIR 16 186 -22 35 0 0 0 chr15 33258298 33258333 -68122188 + AT_rich Low_complexity Low_complexity 1 35 0 221 98 24 0 chr15 33264253 33264294 -68116227 + (CA)n Simple_repeat Simple_repeat 2 43 0 198 71 0 0 chr15 33267366 33267394 -68113127 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 266 86 0 0 chr15 33268274 33268309 -68112212 + U2 snRNA snRNA 1 35 -153 207 299 26 26 chr15 33268417 33268494 -68112027 + MIR SINE MIR 58 134 -74 2198 156 17 0 chr15 33269133 33269486 -68111035 - MER47A DNA MER2_type 0 366 8 514 259 52 29 chr15 33269774 33269948 -68110573 + LTR41 LTR ERVL 1 178 -595 727 307 106 10 chr15 33270820 33271123 -68109398 + MLT1I LTR MaLR 75 406 -3 234 362 24 47 chr15 33271976 33272034 -68108487 + MIR SINE MIR 23 81 -127 496 280 15 0 chr15 33272034 33272166 -68108355 - MER94 DNA DNA 0 134 1 234 362 24 47 chr15 33272166 33272234 -68108287 + MIR SINE MIR 81 146 -62 320 216 45 11 chr15 33272395 33272483 -68108038 - L2 LINE L2 -2 3311 3221 243 326 122 0 chr15 33273856 33273954 -68106567 + L2 LINE L2 3163 3272 0 580 29 0 0 chr15 33274495 33274565 -68105956 - L1PA5 LINE L1 -6 6148 6079 22 35 0 0 chr15 33275435 33275464 -68105057 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr15 33275566 33275600 -68104921 + AT_rich Low_complexity Low_complexity 1 34 0 230 294 0 24 chr15 33275736 33275791 -68104730 + (TA)n Simple_repeat Simple_repeat 1 55 -28 189 0 0 0 chr15 33275791 33275812 -68104709 + (TG)n Simple_repeat Simple_repeat 2 22 0 230 294 0 24 chr15 33275812 33275841 -68104680 + (TA)n Simple_repeat Simple_repeat 55 83 0 206 204 41 0 chr15 33276216 33276265 -68104256 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 577 210 14 14 chr15 33276291 33276429 -68104092 - Charlie4a DNA MER1_type -6 502 365 1327 182 28 17 chr15 33276548 33276839 -68103682 - Charlie4a DNA MER1_type -176 332 39 185 416 50 12 chr15 33277599 33277760 -68102761 + L2 LINE L2 2887 3053 -219 3453 90 10 19 chr15 33278395 33278915 -68101606 + L1MA3 LINE L1 5791 6305 0 950 281 193 21 chr15 33279124 33279861 -68100660 + L2 LINE L2 2424 3292 -21 360 285 18 19 chr15 33281045 33281190 -68099331 - MIR SINE MIR -66 142 3 441 264 9 0 chr15 33282638 33282744 -68097777 + MIR SINE MIR 96 202 -60 1912 203 101 7 chr15 33282790 33283214 -68097307 - MLT1C LTR MaLR -3 464 1 266 329 112 33 chr15 33283214 33283366 -68097155 - L2 LINE L2 -31 3282 3119 345 192 192 0 chr15 33283385 33283484 -68097037 - Charlie1 DNA MER1_type 0 2761 2644 339 298 53 0 chr15 33283770 33283884 -68096637 - MER5B DNA MER1_type -2 176 57 302 374 84 13 chr15 33284591 33284746 -68095775 - MIR SINE MIR -50 212 47 323 209 46 154 chr15 33286567 33286873 -68093648 + HsTC2 DNA Tc2 1 273 -1625 231 306 64 38 chr15 33286916 33287073 -68093448 + HsTC2 DNA Tc2 510 670 -1228 426 139 0 0 chr15 33287118 33287190 -68093331 + (TG)n Simple_repeat Simple_repeat 1 72 0 378 224 168 40 chr15 33288286 33288411 -68092110 - MIR SINE MIR -117 145 5 1016 201 38 123 chr15 33289154 33289553 -68090968 - MLT1A1 LTR MaLR 0 365 1 220 328 0 0 chr15 33290017 33290081 -68090440 + L2 LINE L2 3245 3308 -5 201 196 0 0 chr15 33290390 33290436 -68090085 + A-rich Low_complexity Low_complexity 1 46 0 799 310 116 35 chr15 33290971 33291455 -68089066 + MLT1K LTR MaLR 48 570 -18 305 299 26 26 chr15 33291723 33291877 -68088644 + L1ME1 LINE L1 5499 5652 -469 2360 87 0 3 chr15 33291880 33292189 -68088332 + AluY SINE Alu 4 311 0 338 250 125 0 chr15 33292395 33292531 -68087990 + L1ME4a LINE L1 5960 6112 -9 531 248 35 138 chr15 33292643 33292933 -68087588 - L3 LINE CR1 -21 1556 1297 311 267 210 47 chr15 33292940 33293149 -68087372 + MIR SINE MIR 17 258 -4 515 355 84 42 chr15 33293174 33293554 -68086967 - L3 LINE CR1 -991 586 191 9130 194 14 3 chr15 33294993 33297006 -68083515 - L1P LINE L1 -723 5428 3394 3476 95 0 0 chr15 33348219 33348692 -68031829 + L1PA8 LINE L1 5696 6168 -4 21 0 0 0 chr15 33348692 33348713 -68031808 + AT_rich Low_complexity Low_complexity 1 21 0 1694 285 147 25 chr15 33348726 33349705 -68030816 - HAL1 LINE L1 -1138 1369 272 180 0 0 0 chr15 33349706 33349726 -68030795 + (T)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr15 33350544 33350573 -68029948 + AT_rich Low_complexity Low_complexity 1 29 0 476 103 10 31 chr15 33351874 33351971 -68028550 + (TTTC)n Simple_repeat Simple_repeat 4 98 0 1671 162 3 50 chr15 33352000 33352303 -68028218 - AluJb SINE Alu -23 289 1 1911 194 136 32 chr15 33352304 33352871 -68027650 - MLT1E2 LTR MaLR 0 626 1 2257 121 3 0 chr15 33353221 33353526 -68026995 - AluSx SINE Alu -6 306 1 270 270 0 0 chr15 33353816 33353879 -68026642 + (CACG)n Simple_repeat Simple_repeat 1 63 0 750 185 0 12 chr15 33355280 33355442 -68025079 + L1ME1 LINE L1 5669 5828 -338 3083 172 32 37 chr15 33355481 33355888 -68024633 - MLT1E3 LTR MaLR 0 624 220 2155 129 0 3 chr15 33355888 33356198 -68024323 - AluSq SINE Alu -4 309 1 3083 172 32 37 chr15 33356198 33356417 -68024104 - MLT1E3 LTR MaLR -404 220 1 1420 120 0 0 chr15 33356743 33356934 -68023587 - AluSq SINE Alu -120 193 3 226 258 61 0 chr15 33358149 33358215 -68022306 + MIR SINE MIR 128 197 -65 25 0 0 0 chr15 33358299 33358324 -68022197 + AT_rich Low_complexity Low_complexity 1 25 0 309 250 0 13 chr15 33358424 33358500 -68022021 + MIR SINE MIR 51 125 -137 969 235 102 56 chr15 33358718 33358864 -68021657 - HAL1 LINE L1 -35 2472 2334 1867 154 27 13 chr15 33358864 33359198 -68021323 - AluSx SINE Alu 0 312 1 969 235 102 56 chr15 33359198 33359571 -68020950 - HAL1 LINE L1 -173 2334 1929 2456 84 89 10 chr15 33359571 33359602 -68020919 - MLT2A1 LTR ERVL 0 444 417 216 0 0 0 chr15 33359602 33359626 -68020895 + (TA)n Simple_repeat Simple_repeat 2 25 0 2456 84 89 10 chr15 33359626 33359985 -68020536 - MLT2A1 LTR ERVL -27 417 23 1567 269 27 16 chr15 33360057 33360571 -68019950 - HAL1 LINE L1 -594 1913 1394 2786 125 2 45 chr15 33360596 33361001 -68019520 + L1P LINE L1 1460 1840 -4306 789 36 27 9 chr15 33361001 33361111 -68019410 - L1PA2 LINE L1 0 6155 6044 2786 125 2 45 chr15 33361111 33361210 -68019311 + L1P LINE L1 1840 1942 -4204 406 239 34 0 chr15 33362475 33362563 -68017958 + MIR SINE MIR 122 212 -50 1865 139 3 38 chr15 33363204 33363520 -68017001 + AluJo SINE Alu 1 305 -7 216 364 25 16 chr15 33363972 33364093 -68016428 + MIR SINE MIR 20 141 -67 20285 88 12 7 chr15 33364409 33367510 -68013011 - L1P LINE L1 -760 5386 2269 3897 200 28 21 chr15 33368318 33369811 -68010710 - L1MB8 LINE L1 0 6178 4682 363 236 24 8 chr15 33369808 33369931 -68010590 - L1MB8 LINE L1 -1737 4409 4285 * 2877 129 0 7 chr15 33369985 33370425 -68010096 - MER83 LTR ERV1 -11 437 1 1625 239 16 57 chr15 33370425 33370969 -68009552 - L1MB8 LINE L1 -1908 4238 3717 18460 114 18 28 chr15 33371426 33372541 -68007980 + L1PA8A LINE L1 2140 3266 -2865 2179 105 7 0 chr15 33372541 33372826 -68007695 + AluSc SINE Alu 1 287 -22 18460 114 18 28 chr15 33372826 33375329 -68005192 + L1PA8A LINE L1 3266 5706 -425 1830 61 12 8 chr15 33375429 33375675 -68004846 - AluY SINE Alu -58 253 7 27 0 0 0 chr15 33376418 33376445 -68004076 + AT_rich Low_complexity Low_complexity 1 27 0 3435 130 33 12 chr15 33376877 33376979 -68003542 + L1MA4 LINE L1 5682 5780 -520 189 0 0 0 chr15 33376979 33377000 -68003521 + (TA)n Simple_repeat Simple_repeat 1 21 0 3435 130 33 12 chr15 33377000 33377498 -68003023 + L1MA4 LINE L1 5780 6295 -5 22 0 0 0 chr15 33377603 33377625 -68002896 + AT_rich Low_complexity Low_complexity 1 22 0 568 247 119 10 chr15 33378296 33378460 -68002061 + LTR33 LTR ERVL 1 191 -330 324 0 0 0 chr15 33378460 33378496 -68002025 + (GA)n Simple_repeat Simple_repeat 1 36 0 568 247 119 10 chr15 33378496 33378525 -68001996 + LTR33 LTR ERVL 191 215 -306 183 129 0 0 chr15 33378857 33378888 -68001633 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2137 80 7 37 chr15 33378890 33379190 -68001331 - AluY SINE Alu -20 291 1 340 299 62 0 chr15 33379332 33379509 -68001012 - L1ME LINE L1 -567 5603 5416 413 255 83 26 chr15 33379608 33379910 -68000611 - L1ME LINE L1 -847 5299 4981 917 191 40 10 chr15 33380012 33380238 -68000283 - MSTD LTR MaLR 0 396 204 264 188 0 0 chr15 33380250 33380319 -68000202 + GA-rich Low_complexity Low_complexity 2 70 0 1247 171 14 9 chr15 33380322 33380544 -67999977 - MSTD LTR MaLR -173 223 1 636 246 74 40 chr15 33380547 33380872 -67999649 - L1ME LINE L1 -1302 4844 4509 2282 113 0 0 chr15 33380957 33381257 -67999264 - AluSx SINE Alu -12 300 1 4908 111 8 19 chr15 33381313 33381862 -67998659 - L1PA16 LINE L1 -8 6158 5618 1998 141 0 26 chr15 33381862 33382167 -67998354 + AluSx SINE Alu 1 297 -15 4908 111 8 19 chr15 33382167 33382375 -67998146 - L1PA16 LINE L1 -548 5618 5409 5855 64 1 7 chr15 33382477 33382859 -67997662 + L1PA7 LINE L1 5398 5776 -378 2254 105 0 7 chr15 33382859 33383163 -67997358 + AluY SINE Alu 1 302 -9 5855 64 1 7 chr15 33383163 33383541 -67996980 + L1PA7 LINE L1 5776 6154 0 1147 155 26 23 chr15 33384040 33384304 -67996217 + L1MA6 LINE L1 6031 6295 -5 671 253 92 52 chr15 33385207 33385456 -67995065 + MIR SINE MIR 3 261 -1 378 300 89 39 chr15 33387611 33387791 -67992730 - MIR3 SINE MIR -1 207 19 211 243 178 47 chr15 33387937 33388044 -67992477 + MER5A DNA MER1_type 44 164 -25 180 0 0 0 chr15 33388083 33388103 -67992418 + (A)n Simple_repeat Simple_repeat 1 20 0 203 256 0 0 chr15 33388687 33388726 -67991795 - MIR SINE MIR -141 121 83 266 264 80 24 chr15 33389098 33389223 -67991298 + MER53 DNA DNA 1 132 -57 182 159 14 159 chr15 33389753 33389822 -67990699 + MER5A DNA MER1_type 99 157 -32 206 245 75 0 chr15 33390185 33390238 -67990283 + MER5B DNA MER1_type 122 178 0 1544 157 0 23 chr15 33390950 33391212 -67989309 + AluSx SINE Alu 50 305 -7 203 345 17 0 chr15 33391414 33391472 -67989049 + G-rich Low_complexity Low_complexity 3 61 0 2138 109 0 3 chr15 33391652 33391961 -67988560 + AluSc SINE Alu 1 308 0 208 218 23 0 chr15 33393241 33393328 -67987193 + CT-rich Low_complexity Low_complexity 2 90 0 247 197 307 58 chr15 33393832 33393969 -67986552 + MIR3 SINE MIR 31 201 -7 185 267 0 22 chr15 33394931 33394976 -67985545 + L2 LINE L2 3217 3260 -12 201 195 0 0 chr15 33395010 33395051 -67985470 + GA-rich Low_complexity Low_complexity 2 42 0 2328 71 37 0 chr15 33395056 33395352 -67985169 + AluSp SINE Alu 1 307 -6 24 32 0 0 chr15 33395392 33395423 -67985098 + AT_rich Low_complexity Low_complexity 1 31 0 2041 109 0 56 chr15 33395553 33395856 -67984665 + AluSx SINE Alu 1 286 -26 2134 87 0 93 chr15 33395912 33396245 -67984276 + AluY SINE Alu 1 302 -9 2247 116 0 3 chr15 33396256 33396558 -67983963 + AluSc SINE Alu 1 301 -8 180 200 0 0 chr15 33396706 33396746 -67983775 + (TA)n Simple_repeat Simple_repeat 1 40 0 306 0 0 0 chr15 33397460 33397494 -67983027 + (TG)n Simple_repeat Simple_repeat 1 34 0 12474 104 9 29 chr15 33397687 33400255 -67980266 - L1P3 LINE L1 -3886 2575 1 268 315 0 56 chr15 33400592 33400665 -67979856 + MER5A DNA MER1_type 55 122 -67 2031 145 7 0 chr15 33400665 33400968 -67979553 - AluJb SINE Alu -7 305 1 268 315 0 56 chr15 33400968 33401002 -67979519 + MER5A DNA MER1_type 122 156 -33 1852 167 17 3 chr15 33401896 33402255 -67978266 + L1MB7 LINE L1 5818 6181 -3 2407 80 0 10 chr15 33402391 33402693 -67977828 - AluY SINE Alu -12 299 1 216 0 0 0 chr15 33404575 33404599 -67975922 + (A)n Simple_repeat Simple_repeat 1 24 0 967 274 85 0 chr15 33404986 33405292 -67975229 + LTR33 LTR ERVL 3 334 -187 375 227 31 0 chr15 33405330 33405427 -67975094 + LTR33 LTR ERVL 422 521 0 286 252 79 0 chr15 33405463 33405590 -67974931 - L1ME2 LINE L1 -9 6155 6019 237 280 273 15 chr15 33406888 33407020 -67973501 + MIR3 SINE MIR 38 203 -5 2370 113 123 3 chr15 33407166 33407548 -67972973 - MSTA LTR MaLR 0 428 1 743 218 96 24 chr15 33407825 33408213 -67972308 + MER77 LTR ERV1 177 599 -6 1790 200 40 33 chr15 33409003 33409491 -67971030 + MER110A LTR ERV1 3 477 -7 1073 211 4 18 chr15 33409832 33410059 -67970462 + MER58A DNA MER1_type 1 224 0 629 203 60 0 chr15 33410603 33410736 -67969785 + L2 LINE L2 2623 2763 -551 1782 239 105 0 chr15 33410736 33411250 -67969271 + MER69 DNA AcHobo 1 568 -1958 1008 165 99 116 chr15 33411248 33411774 -67968747 + MER69 DNA AcHobo 2010 2526 0 * 1220 267 63 18 chr15 33411777 33412300 -67968221 + L2 LINE L2 2763 3311 -2 317 289 44 89 chr15 33412802 33412982 -67967539 + MER5A DNA MER1_type 18 189 0 493 254 59 18 chr15 33413090 33413259 -67967262 + MER5B DNA MER1_type 3 178 0 378 257 96 29 chr15 33413356 33413492 -67967029 - MIR3 SINE MIR -31 177 33 284 372 11 49 chr15 33413688 33413871 -67966650 - MER5A DNA MER1_type 0 189 14 852 252 37 9 chr15 33413938 33414156 -67966365 - MER58A DNA MER1_type 0 224 1 283 172 31 16 chr15 33416210 33416274 -67964247 - MLT1L LTR MaLR -337 278 214 1573 128 0 113 chr15 33416452 33416787 -67963734 + AluJb SINE Alu 1 297 -5 315 0 0 0 chr15 33417497 33417532 -67962989 + (TG)n Simple_repeat Simple_repeat 2 36 0 291 54 0 0 chr15 33417536 33417573 -67962948 + (GA)n Simple_repeat Simple_repeat 2 38 0 2111 132 3 0 chr15 33417585 33417881 -67962640 - AluSx SINE Alu -15 297 1 2705 161 121 89 chr15 33417952 33418148 -67962373 + L1MC3 LINE L1 6907 7095 -690 237 242 16 0 chr15 33418148 33418210 -67962311 + MLT1F1 LTR MaLR 52 114 -453 2705 161 121 89 chr15 33418210 33418793 -67961728 + L1MC3 LINE L1 7095 7774 -11 381 292 10 51 chr15 33418913 33419108 -67961413 + L1MEd LINE L1 1067 1253 -4866 329 227 185 34 chr15 33419139 33419258 -67961263 + L1M4 LINE L1 2318 2454 -4395 544 238 31 65 chr15 33419634 33419850 -67960671 - MLT1J1 LTR MaLR -260 251 5 356 254 67 49 chr15 33421023 33421247 -67959274 + L1M4 LINE L1 4663 4890 -1958 3218 200 70 45 chr15 33421402 33422406 -67958115 + L1 LINE L1 3957 4985 -1161 290 368 8 8 chr15 33423152 33423269 -67957252 + MIR3 SINE MIR 52 168 -40 541 300 57 14 chr15 33424624 33424986 -67955535 - L1MEd LINE L1 -857 1633 1162 245 307 87 7 chr15 33425104 33425254 -67955267 + HAL1 LINE L1 1289 1450 -1057 190 342 86 26 chr15 33425309 33425426 -67955095 - MIR SINE MIR -62 146 23 1064 158 41 54 chr15 33427534 33427755 -67952766 + MER20 DNA MER1_type 2 219 0 340 307 99 0 chr15 33427840 33427941 -67952580 - L2 LINE L2 -2 3270 3160 217 309 73 57 chr15 33428918 33429041 -67951480 - L2 LINE L2 -10 3262 3138 2169 183 8 5 chr15 33429544 33429933 -67950588 + MLT1B LTR MaLR 1 390 0 802 241 23 36 chr15 33430687 33430907 -67949614 - L2 LINE L2 0 3313 3097 536 279 96 14 chr15 33431029 33431237 -67949284 + MIR SINE MIR 32 256 -6 263 372 51 0 chr15 33431263 33431400 -67949121 + MIR SINE MIR 109 252 -10 1571 215 51 15 chr15 33432026 33432055 -67948466 - MLT2F LTR ERVL -14 649 623 342 0 0 0 chr15 33432055 33432093 -67948428 + (TG)n Simple_repeat Simple_repeat 2 39 0 1571 215 51 15 chr15 33432093 33432453 -67948068 - MLT2F LTR ERVL -40 623 246 25 51 0 0 chr15 33432475 33432514 -67948007 + AT_rich Low_complexity Low_complexity 1 39 0 928 78 78 0 chr15 33432747 33432876 -67947645 - MER85 DNA T2_type 0 139 1 23 33 0 0 chr15 33433302 33433332 -67947189 + AT_rich Low_complexity Low_complexity 1 30 0 315 71 0 0 chr15 33434120 33434162 -67946359 + (T)n Simple_repeat Simple_repeat 1 42 0 263 340 110 10 chr15 33435665 33435765 -67944756 + MIR SINE MIR 24 133 -75 261 0 0 0 chr15 33436492 33436521 -67944000 + (TG)n Simple_repeat Simple_repeat 1 29 0 329 222 74 0 chr15 33437186 33437267 -67943254 - L2 LINE L2 -1 3312 3226 448 238 6 81 chr15 33437269 33437429 -67943092 + FRAM SINE Alu 1 145 -31 204 40 0 0 chr15 33437432 33437457 -67943064 + (TTG)n Simple_repeat Simple_repeat 2 26 0 181 192 39 39 chr15 33437459 33437511 -67943010 - L2 LINE L2 -90 3223 3172 202 294 11 76 chr15 33437697 33437789 -67942732 - MIR SINE MIR -63 145 60 21 36 0 0 chr15 33438712 33438740 -67941781 + GC_rich Low_complexity Low_complexity 1 28 0 247 290 93 19 chr15 33439513 33439620 -67940901 - MIR3 SINE MIR 0 208 94 913 199 71 50 chr15 33439904 33440241 -67940280 + MER2 DNA MER2_type 1 344 0 769 281 66 9 chr15 33440423 33440651 -67939870 - MIR SINE MIR -20 242 2 356 316 35 40 chr15 33440966 33441194 -67939327 - MLT1I LTR MaLR -180 229 3 267 338 127 0 chr15 33442941 33443083 -67937438 - L2 LINE L2 -9 3263 3104 23 0 0 0 chr15 33443900 33443923 -67936598 + AT_rich Low_complexity Low_complexity 1 23 0 1210 194 5 0 chr15 33444987 33445204 -67935317 + MER58A DNA MER1_type 1 218 -6 1943 152 7 3 chr15 33445996 33446285 -67934236 + AluSx SINE Alu 5 294 -18 637 269 57 24 chr15 33447218 33447430 -67933091 + MIR SINE MIR 20 238 -24 620 227 16 0 chr15 33447430 33447558 -67932963 - MLT1H LTR MaLR 0 549 420 2491 75 0 0 chr15 33447579 33447887 -67932634 - AluY SINE Alu -3 308 1 314 273 8 53 chr15 33447903 33448035 -67932486 - MLT1H LTR MaLR -123 432 307 323 222 174 28 chr15 33448094 33448238 -67932283 - MLT1H LTR MaLR -255 294 130 344 278 56 63 chr15 33448485 33448611 -67931910 - L2 LINE L2 -7 3306 3182 2241 105 7 3 chr15 33448806 33449110 -67931411 - AluSq SINE Alu -8 305 1 573 208 8 32 chr15 33449142 33449267 -67931254 + FLAM_C SINE Alu 3 124 -9 197 276 13 92 chr15 33449920 33449996 -67930525 - L2 LINE L2 -2 3311 3242 268 276 26 26 chr15 33450318 33450394 -67930127 + L2 LINE L2 3180 3255 -17 206 167 24 0 chr15 33450846 33450888 -67929633 + CT-rich Low_complexity Low_complexity 1 43 0 263 289 56 33 chr15 33451272 33451362 -67929159 - MIR SINE MIR -3 259 168 207 395 53 0 chr15 33452261 33452375 -67928146 - L2 LINE L2 -731 2583 2464 252 261 0 68 chr15 33452428 33452516 -67928005 + MIR SINE MIR 131 212 -50 299 353 39 10 chr15 33452555 33452657 -67927864 + L2 LINE L2 3132 3236 -36 1065 110 0 14 chr15 33452950 33453096 -67927425 + AluSc SINE Alu 60 203 -106 182 333 37 56 chr15 33453164 33453272 -67927249 + L2 LINE L2 3146 3251 -21 514 330 43 9 chr15 33453672 33453902 -67926619 - MIR SINE MIR -12 250 13 910 223 22 11 chr15 33453906 33454090 -67926431 - MER5A DNA MER1_type 0 189 4 994 168 97 11 chr15 33454184 33454391 -67926130 + AluJo SINE Alu 84 306 0 323 304 50 50 chr15 33454498 33454758 -67925763 + MER65A LTR ERV1 186 445 0 2755 247 82 14 chr15 33455207 33455907 -67924614 + L1ME1 LINE L1 3206 4001 -2145 2824 136 9 5 chr15 33455907 33456333 -67924188 - MSTA LTR MaLR 0 428 1 2755 247 82 14 chr15 33456333 33456670 -67923851 + L1ME1 LINE L1 4001 4314 -1832 287 228 38 0 chr15 33456661 33456740 -67923781 + L1M4 LINE L1 5149 5230 -916 * 42274 37 2 6 chr15 33456758 33462931 -67917590 - L1PA3 LINE L1 -1 6154 7 246 208 0 0 chr15 33462926 33462974 -67917547 + L1M4 LINE L1 5206 5253 -893 * 2712 246 49 15 chr15 33462990 33463922 -67916599 + L1ME1 LINE L1 4313 5276 -870 227 255 40 121 chr15 33463936 33464085 -67916436 - L1ME2 LINE L1 -83 6081 5945 2327 232 25 50 chr15 33464089 33464885 -67915636 + L1ME1 LINE L1 5285 6060 -106 245 218 53 123 chr15 33464835 33465005 -67915516 + L1MA10 LINE L1 6170 6327 -7 * 370 289 58 16 chr15 33465227 33465348 -67915173 + MIR3 SINE MIR 37 162 -46 465 343 7 7 chr15 33466198 33466335 -67914186 + MIR3 SINE MIR 22 158 -50 247 216 81 0 chr15 33466495 33466569 -67913952 - MER113 DNA MER1_type? -412 109 30 244 257 68 10 chr15 33466633 33466766 -67913755 + MLT1J2 LTR MaLR 75 219 -190 708 114 7 40 chr15 33466807 33466956 -67913565 + L1PA10 LINE L1 5940 6083 -85 1057 166 6 135 chr15 33467059 33467152 -67913369 - L1 LINE L1 -1438 4708 4605 2109 119 0 0 chr15 33467152 33467438 -67913083 - AluSx SINE Alu -26 286 1 1057 166 6 135 chr15 33467438 33467699 -67912822 - L1 LINE L1 -1541 4605 4400 412 273 197 43 chr15 33467701 33468005 -67912516 - L2 LINE L2 -40 3273 2923 2163 108 0 45 chr15 33468005 33468319 -67912202 + AluSg SINE Alu 1 300 -10 283 284 20 39 chr15 33468348 33468450 -67912071 + MIR3 SINE MIR 102 201 -7 231 36 0 0 chr15 33470186 33470214 -67910307 + (T)n Simple_repeat Simple_repeat 1 28 0 645 253 74 11 chr15 33470234 33470424 -67910097 - MIR SINE MIR -14 248 47 377 307 89 71 chr15 33470809 33471135 -67909386 + L2 LINE L2 2933 3264 -8 1312 122 0 21 chr15 33471467 33471655 -67908866 - AluSg/x SINE Alu -6 304 121 331 320 70 0 chr15 33471736 33471836 -67908685 - MER5B DNA MER1_type -71 107 1 2177 121 0 0 chr15 33472763 33473053 -67907468 + AluSc SINE Alu 1 290 -19 3417 83 20 0 chr15 33473895 33474339 -67906182 + MLT2A2 LTR ERVL 1 453 0 233 271 100 0 chr15 33476457 33476527 -67903994 + L3b LINE CR1 1375 1451 -132 294 323 0 84 chr15 33476679 33476834 -67903687 - MIR SINE MIR -55 207 66 228 312 0 104 chr15 33478194 33478319 -67902202 + L2 LINE L2 2565 2676 -638 193 292 31 0 chr15 33479075 33479140 -67901381 + L2 LINE L2 2980 3046 -226 489 213 0 0 chr15 33479820 33479900 -67900621 + AluJ/FLAM SINE Alu 1 80 -232 1075 278 81 25 chr15 33480000 33480553 -67899968 + L1M4 LINE L1 2339 2929 -3217 1732 171 34 3 chr15 33480553 33480846 -67899675 + AluJb SINE Alu 1 302 -10 1075 278 81 25 chr15 33480846 33480885 -67899636 + L1M4 LINE L1 2929 2964 -3182 * 5193 124 45 40 chr15 33480884 33482071 -67898450 + L1MA7 LINE L1 5098 6288 -3 1645 239 117 27 chr15 33482094 33482516 -67898005 + L1M4 LINE L1 2975 3358 -2788 1334 164 50 0 chr15 33482516 33482797 -67897724 - L1MA8 LINE L1 -1 6290 5996 1645 239 117 27 chr15 33482797 33483230 -67897291 + L1M4 LINE L1 3358 3907 -2239 335 253 32 21 chr15 33483441 33483536 -67896985 + L2 LINE L2 3218 3313 0 300 259 43 86 chr15 33483661 33483823 -67896698 - MLT1J LTR MaLR -332 179 25 2386 62 3 0 chr15 33484071 33484362 -67896159 - AluY SINE Alu -15 296 5 1120 60 0 0 chr15 33484727 33484861 -67895660 + AluSc SINE Alu 1 134 -175 262 0 0 0 chr15 33484861 33484891 -67895630 - L1P2 LINE L1 -494 5660 5631 * 503 60 19 0 chr15 33484876 33484958 -67895563 + L1PA7 LINE L1 6030 6114 -40 2542 61 0 0 chr15 33486405 33486715 -67893806 - AluY SINE Alu -1 310 1 207 0 0 0 chr15 33487613 33487636 -67892885 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2052 117 0 0 chr15 33487638 33487920 -67892601 - AluSx SINE Alu -30 282 1 22 65 0 0 chr15 33488947 33488978 -67891543 + AT_rich Low_complexity Low_complexity 1 31 0 304 250 125 27 chr15 33489919 33490031 -67890490 - MIR SINE MIR -66 142 20 407 330 37 42 chr15 33490083 33490298 -67890223 + MIR SINE MIR 18 231 -31 1391 218 44 49 chr15 33490703 33491070 -67889451 + MLT1A1 LTR MaLR 1 365 0 824 274 43 4 chr15 33492786 33493020 -67887501 - MIR SINE MIR 0 262 20 2216 99 10 10 chr15 33493165 33493468 -67887053 + AluSc SINE Alu 1 303 -6 225 258 22 22 chr15 33493776 33493865 -67886656 + GA-rich Low_complexity Low_complexity 3 91 0 253 320 131 10 chr15 33494085 33494255 -67886266 - MIR3 SINE MIR -60 202 4 544 278 48 48 chr15 33494412 33494639 -67885882 + MIR SINE MIR 36 262 0 240 54 0 108 chr15 33495231 33495305 -67885216 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 275 321 0 12 chr15 33495614 33495695 -67884826 - MER5B DNA MER1_type -98 80 1 2152 120 7 0 chr15 33495739 33496038 -67884483 - AluSx SINE Alu -6 306 6 272 233 48 39 chr15 33496160 33496263 -67884258 - L1ME LINE L1 -460 5661 5558 346 253 71 26 chr15 33497269 33497412 -67883109 - MIR SINE MIR -40 168 19 2423 70 0 10 chr15 33497605 33497919 -67882602 + AluY SINE Alu 1 311 0 298 210 12 62 chr15 33498181 33498262 -67882259 + L2 LINE L2 3191 3267 -5 * 392 292 125 7 chr15 33498252 33498396 -67882125 + MIR3 SINE MIR 12 172 -36 2200 102 7 7 chr15 33498455 33498759 -67881762 - AluSp SINE Alu -9 304 1 254 281 61 89 chr15 33498856 33499102 -67881419 + MLT1K LTR MaLR 192 430 -158 619 193 0 62 chr15 33499573 33499626 -67880895 + MER96B DNA MER1_type? 247 302 -115 2473 58 3 13 chr15 33499626 33499938 -67880583 - AluY SINE Alu -2 309 1 619 193 0 62 chr15 33499938 33500060 -67880461 + MER96B DNA MER1_type? 302 411 -6 1816 86 93 15 chr15 33500311 33500580 -67879941 + AluY SINE Alu 1 290 -21 414 264 192 0 chr15 33500815 33500940 -67879581 + MER5A DNA MER1_type 40 188 -1 2275 98 0 0 chr15 33500977 33501262 -67879259 - AluSx SINE Alu -27 285 1 180 0 0 0 chr15 33501588 33501608 -67878913 + (A)n Simple_repeat Simple_repeat 1 20 0 39 50 0 0 chr15 33501981 33502041 -67878480 + AT_rich Low_complexity Low_complexity 1 60 0 208 350 128 0 chr15 33502083 33502200 -67878321 - L2 LINE L2 -674 2640 2509 201 330 19 28 chr15 33502221 33502327 -67878194 - L2 LINE L2 -96 3217 3113 1612 147 131 19 chr15 33502796 33503108 -67877413 + MER7A DNA MER2_type 1 345 -1 2352 102 0 0 chr15 33504641 33504944 -67875577 + AluSq SINE Alu 1 303 -10 1686 188 4 0 chr15 33505310 33505586 -67874935 - AluJo SINE Alu -35 277 1 501 273 27 96 chr15 33505987 33506129 -67874392 - L1ME LINE L1 -297 5824 5674 1692 138 78 18 chr15 33506129 33506411 -67874110 + AluSx SINE Alu 1 299 -13 501 273 27 96 chr15 33506411 33506748 -67873773 - L1ME LINE L1 -447 5674 5378 2263 111 16 26 chr15 33506852 33507231 -67873290 + THE1C LTR MaLR 1 375 0 799 263 61 32 chr15 33507726 33507973 -67872548 - MIR SINE MIR -1 261 8 233 326 11 0 chr15 33508052 33508141 -67872380 + GA-rich Low_complexity Low_complexity 3 92 0 770 194 129 40 chr15 33508621 33508822 -67871699 + MER20 DNA MER1_type 1 219 0 2165 116 7 3 chr15 33508941 33509243 -67871278 + AluSx SINE Alu 1 303 -9 300 295 86 9 chr15 33509789 33509894 -67870627 - MIR SINE MIR -114 148 36 241 305 32 0 chr15 33510108 33510203 -67870318 - Charlie7 DNA MER1_type -2513 99 2 589 221 11 50 chr15 33510570 33510751 -67869770 - AluYa5 SINE Alu 0 311 138 232 259 0 25 chr15 33510985 33511066 -67869455 - L1MC/D LINE L1 -1878 5930 5852 384 320 150 18 chr15 33511127 33511508 -67869013 - L1MC/D LINE L1 -2074 5734 5304 303 257 137 68 chr15 33511510 33511817 -67868704 - L1MC/D LINE L1 -853 5293 4966 28 48 0 0 chr15 33511848 33511890 -67868631 + AT_rich Low_complexity Low_complexity 1 42 0 261 0 0 0 chr15 33511893 33511922 -67868599 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1657 206 0 0 chr15 33511924 33512206 -67868315 - AluJo SINE Alu -30 282 1 1282 242 59 10 chr15 33514710 33515102 -67865419 + LTR33 LTR ERVL 14 424 -97 526 278 142 0 chr15 33515404 33515583 -67864938 - MIR SINE MIR -19 243 42 1078 173 128 48 chr15 33515780 33515934 -67864587 - MLT1B LTR MaLR 0 390 250 405 0 0 0 chr15 33515934 33515979 -67864542 + (TG)n Simple_repeat Simple_repeat 2 46 0 1078 173 128 48 chr15 33515979 33516182 -67864339 - MLT1B LTR MaLR -140 250 4 356 342 107 0 chr15 33517464 33517651 -67862870 - L3b LINE CR1 -130 1453 1247 1582 132 79 84 chr15 33518531 33518612 -67861909 + MLT2D LTR ERVL 1 81 -333 1525 154 0 0 chr15 33518612 33518839 -67861682 - AluSg/x SINE Alu 0 310 84 1582 132 79 84 chr15 33518839 33519136 -67861385 + MLT2D LTR ERVL 81 377 -37 183 333 115 10 chr15 33519403 33519499 -67861022 + L2 LINE L2 2696 2801 -513 278 219 62 0 chr15 33519499 33519563 -67860958 + MER94 DNA DNA 1 68 -66 492 280 37 115 chr15 33519583 33519958 -67860563 + L2 LINE L2 2843 3188 -84 224 296 122 32 chr15 33519996 33520194 -67860327 - MIR SINE MIR -46 216 5 807 107 0 8 chr15 33520712 33520834 -67859687 + AluSc SINE Alu 14 134 -175 698 108 27 0 chr15 33520849 33520960 -67859561 + L1PA6 LINE L1 6030 6143 -11 1206 158 0 0 chr15 33520989 33521172 -67859349 + AluSg/x SINE Alu 124 306 -6 679 202 0 0 chr15 33521354 33521483 -67859038 - FLAM_C SINE Alu 0 133 5 728 146 0 69 chr15 33521910 33522054 -67858467 + FLAM_A SINE Alu 6 139 -3 195 290 72 0 chr15 33523217 33523286 -67857235 - L2 LINE L2 -1885 1429 1356 199 262 33 16 chr15 33523573 33523634 -67856887 - L2 LINE L2 -2106 1208 1147 345 339 108 47 chr15 33524005 33524635 -67855886 - L2 LINE L2 -3 3269 2601 448 215 25 16 chr15 33524737 33524858 -67855663 + L1ME4a LINE L1 5545 5666 -455 669 183 0 0 chr15 33524858 33524973 -67855548 + AluSg/x SINE Alu 198 312 0 649 228 149 70 chr15 33524995 33525154 -67855367 + L1ME4a LINE L1 5679 5824 -297 754 183 0 44 chr15 33525154 33525291 -67855230 + FLAM_A SINE Alu 1 131 -2 649 228 149 70 chr15 33525291 33525534 -67854987 + L1ME4a LINE L1 5824 6113 -8 3187 244 83 28 chr15 33526294 33527300 -67853221 + L2 LINE L2 1144 3057 -256 320 83 0 0 chr15 33527300 33527348 -67853173 - MADE1 DNA Mariner -30 50 3 3313 185 43 55 chr15 33527436 33528368 -67852153 - L1MCa LINE L1 -5170 887 46 660 193 6 78 chr15 33528373 33528539 -67851982 + L2 LINE L2 3159 3312 -1 649 308 48 74 chr15 33528583 33528934 -67851587 + L2 LINE L2 2930 3271 -1 1774 233 81 16 chr15 33528978 33529485 -67851036 - MLT1F1 LTR MaLR -25 542 3 2011 111 0 28 chr15 33530587 33530876 -67849645 + AluSq SINE Alu 1 281 -32 319 216 27 45 chr15 33530932 33531043 -67849478 + MIR SINE MIR 98 206 -56 398 264 101 39 chr15 33531876 33532054 -67848467 + MER5A DNA MER1_type 1 189 0 365 325 41 8 chr15 33532189 33532312 -67848209 - L2 LINE L2 -4 3268 3142 1055 186 0 0 chr15 33532775 33532952 -67847569 - MER5B DNA MER1_type 0 178 2 494 279 101 14 chr15 33533846 33534054 -67846467 - MIR SINE MIR 0 262 37 334 316 35 70 chr15 33534131 33534302 -67846219 + MER5B DNA MER1_type 9 173 -5 2342 86 3 13 chr15 33534743 33535057 -67845464 + AluY SINE Alu 1 311 0 532 207 52 9 chr15 33536488 33536604 -67843917 - MIR3 SINE MIR -3 205 85 2367 83 3 3 chr15 33536728 33537028 -67843493 - AluSc SINE Alu -6 303 4 539 271 36 52 chr15 33537230 33537422 -67843099 + MIR SINE MIR 61 249 -13 206 271 49 97 chr15 33537952 33538096 -67842425 + L2 LINE L2 3169 3305 -8 1587 253 140 17 chr15 33538134 33538664 -67841857 - MLT1G1 LTR MaLR 0 595 1 1338 226 64 57 chr15 33539130 33539554 -67840967 - MLT2B1 LTR ERVL 0 520 91 1505 193 54 0 chr15 33539554 33539813 -67840708 + AluJb SINE Alu 7 279 -33 1338 226 64 57 chr15 33539813 33539844 -67840677 - MLT2B1 LTR ERVL -429 91 62 245 79 0 0 chr15 33540069 33540107 -67840414 + L1MC4 LINE L1 7553 7590 -452 967 305 30 44 chr15 33540107 33540543 -67839978 + LTR16B LTR ERVL 4 433 -31 402 186 10 29 chr15 33540549 33540651 -67839870 + L1MC4 LINE L1 7943 8042 0 1898 169 0 13 chr15 33541382 33541683 -67838838 + AluJo SINE Alu 1 297 -15 721 189 61 11 chr15 33541763 33541943 -67838578 + L1MDa LINE L1 2081 2269 -4271 1630 157 139 26 chr15 33541943 33542161 -67838360 + L1MD2 LINE L1 5914 6106 -253 210 91 0 0 chr15 33542161 33542194 -67838327 + (CA)n Simple_repeat Simple_repeat 2 34 0 1630 157 139 26 chr15 33542194 33542364 -67838157 + L1MD2 LINE L1 6106 6346 -13 21 57 0 0 chr15 33543220 33543255 -67837266 + AT_rich Low_complexity Low_complexity 1 35 0 511 158 40 10 chr15 33543513 33543614 -67836907 + L1MC2 LINE L1 6233 6336 -8 205 324 72 18 chr15 33544612 33544723 -67835798 + MIR SINE MIR 34 150 -112 385 272 0 22 chr15 33545396 33545488 -67835033 - MIR SINE MIR -90 118 29 2212 103 7 0 chr15 33545748 33546038 -67834483 - AluSq SINE Alu -20 293 2 303 260 110 47 chr15 33548019 33548146 -67832375 - MIR SINE MIR -78 184 50 186 103 0 0 chr15 33548170 33548199 -67832322 + (TG)n Simple_repeat Simple_repeat 2 30 0 228 119 0 119 chr15 33548458 33548525 -67831996 - L1MC5 LINE L1 -695 7266 7208 592 229 0 0 chr15 33548554 33548672 -67831849 - MER3 DNA MER1_type -85 124 7 1804 152 40 10 chr15 33548936 33549238 -67831283 - AluJb SINE Alu -1 311 1 461 206 28 37 chr15 33549760 33549867 -67830654 - MER7A DNA MER2_type 0 346 241 727 83 220 0 chr15 33549868 33550000 -67830521 + MER30 DNA MER1_type 70 230 0 828 175 76 0 chr15 33550000 33550171 -67830350 - MER7A DNA MER2_type -164 182 1 1645 193 70 3 chr15 33551255 33551597 -67828924 + MLT1A1 LTR MaLR 1 365 0 1785 186 4 0 chr15 33551807 33552086 -67828435 - AluJo SINE Alu -31 281 2 408 302 101 31 chr15 33552128 33552651 -67827870 - L1ME4a LINE L1 -72 6049 5490 219 69 0 0 chr15 33552707 33552736 -67827785 + (TATAA)n Simple_repeat Simple_repeat 1 29 0 379 207 103 0 chr15 33552764 33552851 -67827670 - MER46A DNA MER2_type -140 96 1 227 235 49 0 chr15 33553813 33553894 -67826627 - L1ME4a LINE L1 -64 6057 5973 192 293 0 0 chr15 33554455 33554496 -67826025 + MIR SINE MIR 6 46 -216 186 314 128 0 chr15 33555322 33555408 -67825113 - MER5A DNA MER1_type -30 159 63 * 274 226 32 0 chr15 33555349 33555411 -67825110 + MER5A DNA MER1_type 78 141 -48 29 47 0 0 chr15 33555423 33555466 -67825055 + AT_rich Low_complexity Low_complexity 1 43 0 745 206 139 50 chr15 33555483 33555784 -67824737 - L1MC5 LINE L1 -122 7839 7512 386 291 138 25 chr15 33556506 33556709 -67823812 - MIR SINE MIR 0 262 37 287 188 0 0 chr15 33556956 33557004 -67823517 - L2 LINE L2 -5 3267 3220 312 27 0 0 chr15 33557755 33557792 -67822729 + (CA)n Simple_repeat Simple_repeat 1 37 0 414 0 0 0 chr15 33557929 33557975 -67822546 + (CA)n Simple_repeat Simple_repeat 2 47 0 361 288 89 107 chr15 33558346 33558850 -67821671 + L1M2 LINE L1 527 1021 -5828 5106 105 33 14 chr15 33558958 33559756 -67820765 - L1PA15 LINE L1 -77 6088 5276 1629 181 0 26 chr15 33559965 33560269 -67820252 + AluJb SINE Alu 1 296 -16 1494 188 9 54 chr15 33560323 33560594 -67819927 + MER2 DNA MER2_type 15 270 -75 2296 108 0 0 chr15 33560594 33560891 -67819630 - AluSg SINE Alu -13 297 1 1494 188 9 54 chr15 33560891 33560954 -67819567 + MER2 DNA MER2_type 270 334 -11 442 251 288 0 chr15 33561337 33561500 -67819021 + MIR SINE MIR 44 253 -9 267 389 38 11 chr15 33561645 33561830 -67818691 - MIR3 SINE MIR -3 205 16 363 321 44 0 chr15 33562734 33562871 -67817650 + L3 LINE CR1 1143 1285 -292 2263 111 0 0 chr15 33563182 33563480 -67817041 + AluSc SINE Alu 1 298 -11 594 242 56 6 chr15 33563482 33563643 -67816878 + MIR SINE MIR 84 252 -10 2634 74 17 6 chr15 33563808 33564159 -67816362 + THE1A LTR MaLR 1 355 0 10796 109 27 0 chr15 33564159 33565698 -67814823 + THE1A-int LTR MaLR 1 1580 0 2704 96 0 0 chr15 33565698 33566053 -67814468 + THE1A LTR MaLR 1 355 0 1787 187 66 62 chr15 33566639 33567142 -67813379 - MLT1D LTR MaLR 0 505 1 388 301 69 12 chr15 33567180 33567348 -67813173 + L1ME LINE L1 5269 5452 -669 25 0 0 0 chr15 33568050 33568075 -67812446 + GC_rich Low_complexity Low_complexity 1 25 0 189 214 0 0 chr15 33571768 33571810 -67808711 + (TA)n Simple_repeat Simple_repeat 1 42 0 238 204 93 0 chr15 33572257 33572311 -67808210 + L2 LINE L2 3213 3271 -1 454 264 8 23 chr15 33573181 33573310 -67807211 + L2 LINE L2 2497 2623 -691 1063 158 28 167 chr15 33573314 33573740 -67806781 + MLT1A1 LTR MaLR 1 432 0 486 264 269 5 chr15 33574299 33574496 -67806025 - MIR SINE MIR 0 262 14 2367 181 113 24 chr15 33574535 33575172 -67805349 + L1ME1 LINE L1 5254 5947 -217 251 246 49 0 chr15 33575183 33575244 -67805277 + L1ME1 LINE L1 6015 6078 -88 382 147 67 0 chr15 33575247 33575322 -67805199 - MLT1A2 LTR MaLR 0 374 295 893 208 43 10 chr15 33576400 33576607 -67803914 + MER58 DNA MER1_type 1 214 -2206 293 329 54 30 chr15 33577047 33577214 -67803307 + MIR3 SINE MIR 38 208 0 236 89 0 22 chr15 33578921 33578966 -67801555 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 509 101 0 0 chr15 33579427 33579496 -67801025 + Alu SINE Alu 1 69 -240 26 30 0 0 chr15 33580050 33580083 -67800438 + AT_rich Low_complexity Low_complexity 1 33 0 2184 107 13 10 chr15 33581436 33581744 -67798777 + AluSq SINE Alu 1 309 -4 617 259 59 79 chr15 33581776 33582081 -67798440 - L2 LINE L2 -1 3312 3014 1338 220 40 38 chr15 33583654 33584027 -67796494 - MLT1A2 LTR MaLR 0 374 1 255 271 83 14 chr15 33584351 33584495 -67796026 - L1M4 LINE L1 -2015 4131 3978 5730 215 78 60 chr15 33584569 33585576 -67794945 - L1MD2 LINE L1 -2 6357 5370 1915 112 0 0 chr15 33585576 33585826 -67794695 - AluSx SINE Alu -62 250 1 5730 215 78 60 chr15 33585826 33586501 -67794020 - L1MD2 LINE L1 -989 5370 4709 351 0 0 0 chr15 33586501 33586540 -67793981 + (TG)n Simple_repeat Simple_repeat 2 40 0 2192 85 3 3 chr15 33586543 33586826 -67793695 - AluSq SINE Alu -30 283 1 5730 215 78 60 chr15 33586826 33588404 -67792117 - L1MD2 LINE L1 -1651 4708 3012 30 45 0 0 chr15 33588437 33588481 -67792040 + AT_rich Low_complexity Low_complexity 1 44 0 233 314 45 12 chr15 33589041 33589283 -67791238 - L1M4 LINE L1 -2659 3487 3238 1570 231 65 44 chr15 33589306 33589848 -67790673 - L1MC4 LINE L1 -38 8004 7452 307 264 88 0 chr15 33589846 33589937 -67790584 + L1MC4 LINE L1 6879 6977 -1065 * 295 54 0 71 chr15 33589994 33590050 -67790471 + (TTATA)n Simple_repeat Simple_repeat 4 55 0 350 309 88 30 chr15 33590139 33590698 -67789823 - L1M4 LINE L1 -3038 3108 2518 255 226 19 0 chr15 33591210 33591263 -67789258 + CT-rich Low_complexity Low_complexity 3 56 0 23 33 0 0 chr15 33591571 33591601 -67788920 + AT_rich Low_complexity Low_complexity 1 30 0 299 267 80 0 chr15 33592243 33592318 -67788203 - MIR SINE MIR -7 255 175 21 57 0 0 chr15 33592737 33592772 -67787749 + AT_rich Low_complexity Low_complexity 1 35 0 207 0 0 0 chr15 33593134 33593157 -67787364 + (T)n Simple_repeat Simple_repeat 1 23 0 2372 145 45 37 chr15 33594108 33594570 -67785951 - L1PA16 LINE L1 -4 6162 5697 21 0 0 0 chr15 33594758 33594779 -67785742 + AT_rich Low_complexity Low_complexity 1 21 0 2145 110 7 0 chr15 33595050 33595342 -67785179 - AluSq SINE Alu -18 295 2 1608 213 104 8 chr15 33595502 33595896 -67784625 + MER63B DNA MER1_type 1 432 -4 260 229 0 0 chr15 33596054 33596102 -67784419 - L2 LINE L2 -495 2819 2772 772 264 59 57 chr15 33596564 33596988 -67783533 + L1MC4 LINE L1 7618 8042 0 261 363 25 19 chr15 33597014 33597174 -67783347 - MIR SINE MIR -37 225 65 2108 120 0 3 chr15 33597253 33597560 -67782961 - AluSx SINE Alu 0 306 1 603 261 33 13 chr15 33599185 33599338 -67781183 + MER5B DNA MER1_type 1 156 -22 394 261 0 58 chr15 33599539 33599677 -67780844 - MER5B DNA MER1_type -48 130 1 407 138 0 0 chr15 33600856 33600914 -67779607 + MER46B DNA MER2_type 1 58 -303 741 145 40 0 chr15 33600914 33601038 -67779483 - FLAM_C SINE Alu -14 129 1 1554 147 89 7 chr15 33601038 33601330 -67779191 + MER46B DNA MER2_type 45 235 -1 683 203 99 33 chr15 33601369 33601551 -67778970 - MLT2C1 LTR ERVL -61 336 143 * 1411 228 71 16 chr15 33601529 33601840 -67778681 + MLT1F LTR MaLR 188 515 -27 370 232 20 71 chr15 33601862 33601961 -67778560 + MLT1F1-int LTR MaLR 10 103 -1268 799 290 25 13 chr15 33602023 33602337 -67778184 + MLT1F1-int LTR MaLR 292 609 -762 240 303 157 0 chr15 33602556 33602645 -67777876 + MLT1F1-int LTR MaLR 755 857 -514 353 279 21 129 chr15 33602769 33603009 -67777512 + MLT1F1-int LTR MaLR 973 1186 -185 233 244 23 23 chr15 33603101 33603187 -67777334 + MLT1F1-int LTR MaLR 1629 1714 -21 2425 227 35 5 chr15 33603212 33603763 -67776758 + MLT1F1 LTR MaLR 1 567 0 185 237 85 17 chr15 33604231 33604290 -67776231 - L2 LINE L2 0 3313 3251 1759 145 24 20 chr15 33604626 33604922 -67775599 - AluJb SINE Alu -13 299 3 247 250 0 0 chr15 33606331 33606379 -67774142 - MIR SINE MIR -12 250 203 407 218 73 8 chr15 33606464 33606588 -67773933 - L1ME4a LINE L1 -260 5861 5730 287 352 104 11 chr15 33606974 33607156 -67773365 + MIR3 SINE MIR 1 199 -9 1491 176 36 26 chr15 33607368 33607675 -67772846 - AluJo SINE Alu -2 310 1 1300 239 85 35 chr15 33608093 33608219 -67772302 + Charlie4a DNA MER1_type 29 147 -1814 1386 175 193 23 chr15 33608219 33608618 -67771903 - MLT1C LTR MaLR 0 467 1 1300 239 85 35 chr15 33608618 33608948 -67771573 + Charlie4a DNA MER1_type 147 508 0 330 269 101 8 chr15 33608961 33609080 -67771441 + HAL1 LINE L1 1137 1266 -1241 316 309 39 28 chr15 33609113 33609291 -67771230 + L1 LINE L1 3747 3926 -2220 755 74 0 16 chr15 33609691 33609812 -67770709 - AluY SINE Alu -2 309 191 217 333 132 37 chr15 33611270 33611726 -67768795 - L2 LINE L2 -825 2489 1991 1359 107 56 5 chr15 33611847 33612063 -67768458 + MER30 DNA MER1_type 4 230 0 478 221 76 23 chr15 33612277 33612408 -67768113 - MIR SINE MIR -73 189 52 21 36 0 0 chr15 33613216 33613244 -67767277 + AT_rich Low_complexity Low_complexity 1 28 0 289 292 35 18 chr15 33613272 33613385 -67767136 + MIR SINE MIR 57 171 -91 21 0 0 0 chr15 33613751 33613772 -67766749 + AT_rich Low_complexity Low_complexity 1 21 0 1866 140 3 7 chr15 33614487 33614806 -67765715 + AluSx SINE Alu 1 318 0 363 297 29 40 chr15 33615429 33615604 -67764917 - L1ME4a LINE L1 -371 5750 5578 414 281 62 41 chr15 33615758 33615904 -67764617 - MIR SINE MIR -40 222 74 261 207 52 0 chr15 33615936 33615994 -67764527 + MER112 DNA MER1_type 1 61 -199 2250 78 7 13 chr15 33617063 33617371 -67763150 - AluY SINE Alu -5 306 1 1480 169 14 34 chr15 33617380 33617676 -67762845 - AluJo SINE Alu -22 290 1 672 188 144 33 chr15 33617832 33618013 -67762508 + MER3 DNA MER1_type 8 208 -1 268 203 0 51 chr15 33617969 33618028 -67762493 - MER3 DNA MER1_type -120 89 34 * 2248 100 7 3 chr15 33618028 33618337 -67762184 - AluSx SINE Alu -2 310 1 267 254 75 0 chr15 33618468 33618535 -67761986 - MER113 DNA MER1_type? -5 516 445 1230 155 170 17 chr15 33618535 33618872 -67761649 - MSTA LTR MaLR 0 428 1 21 36 0 0 chr15 33619157 33619185 -67761336 + AT_rich Low_complexity Low_complexity 1 28 0 212 222 0 0 chr15 33619606 33619642 -67760879 - MIR SINE MIR -4 258 223 186 324 118 10 chr15 33619654 33619756 -67760765 - L2 LINE L2 -12 3260 3148 5212 115 34 5 chr15 33619888 33620407 -67760114 - L1PA16 LINE L1 -9 6157 5655 2167 113 0 3 chr15 33620407 33620700 -67759821 - AluSx SINE Alu -20 292 1 5212 115 34 5 chr15 33620700 33621337 -67759184 - L1PA16 LINE L1 -511 5655 4972 368 186 3 0 chr15 33621337 33621411 -67759110 + L1PA16 LINE L1 4917 4992 -1154 342 0 0 0 chr15 33621651 33621689 -67758832 + (TA)n Simple_repeat Simple_repeat 2 39 0 3469 199 167 25 chr15 33622607 33623615 -67756906 - L1MC4a LINE L1 0 7808 6658 2016 127 0 0 chr15 33623642 33623926 -67756595 - AluSg SINE Alu -26 284 1 256 356 74 7 chr15 33623929 33624078 -67756443 - MIR SINE MIR -103 159 1 22 70 0 0 chr15 33624156 33624199 -67756322 + AT_rich Low_complexity Low_complexity 1 43 0 218 326 0 0 chr15 33624242 33624291 -67756230 - L2 LINE L2 -15 3257 3209 21 0 0 0 chr15 33624457 33624478 -67756043 + AT_rich Low_complexity Low_complexity 1 21 0 332 266 154 14 chr15 33624599 33624742 -67755779 - MIR SINE MIR -11 251 89 368 291 61 80 chr15 33625202 33625404 -67755117 + L3 LINE CR1 1366 1565 -12 1579 166 20 36 chr15 33625404 33625706 -67754815 - AluJo SINE Alu -15 297 1 1956 130 14 0 chr15 33626202 33626328 -67754193 + AluSx SINE Alu 1 124 -188 291 54 0 0 chr15 33626328 33626365 -67754156 + (CA)n Simple_repeat Simple_repeat 2 38 0 1956 130 14 0 chr15 33626365 33626531 -67753990 + AluSx SINE Alu 124 297 -15 1598 133 49 78 chr15 33627022 33627407 -67753114 - THE1C LTR MaLR 0 375 2 432 259 141 7 chr15 33627693 33627828 -67752693 + MIR SINE MIR 36 188 -74 241 309 28 28 chr15 33628008 33628186 -67752335 - L1ME4a LINE L1 -69 6052 5875 277 321 43 38 chr15 33628234 33628418 -67752103 - L1ME4a LINE L1 -2039 5769 5585 267 273 77 87 chr15 33628825 33629008 -67751513 - MER5A DNA MER1_type -2 187 7 24 0 0 0 chr15 33629054 33629078 -67751443 + AT_rich Low_complexity Low_complexity 1 24 0 786 289 118 16 chr15 33629200 33629758 -67750763 - L2 LINE L2 -1 3312 2689 1359 169 92 32 chr15 33629974 33630258 -67750263 + AluJo SINE Alu 4 304 -8 306 301 174 18 chr15 33630950 33631269 -67749252 - L1MC/D LINE L1 -609 5575 5366 299 263 18 53 chr15 33631508 33631622 -67748899 - L2 LINE L2 -655 2659 2550 22 35 0 0 chr15 33631800 33631829 -67748692 + AT_rich Low_complexity Low_complexity 1 29 0 406 196 206 37 chr15 33631836 33631943 -67748578 + FLAM_A SINE Alu 3 127 -6 * 449 143 185 0 chr15 33631938 33632057 -67748464 + Charlie2 DNA MER1_type 2130 2270 -592 28 0 0 0 chr15 33632057 33632085 -67748436 + AT_rich Low_complexity Low_complexity 1 28 0 390 270 87 10 chr15 33632230 33632426 -67748095 - L1ME4a LINE L1 -205 6310 6100 * 898 112 28 0 chr15 33632425 33632554 -67747967 + L1PB1 LINE L1 5645 5780 -371 345 47 0 0 chr15 33632554 33632597 -67747924 + (TG)n Simple_repeat Simple_repeat 2 44 0 898 112 28 0 chr15 33632597 33632610 -67747911 + L1PB1 LINE L1 5780 5791 -360 191 74 19 56 chr15 33632610 33632664 -67747857 + (TTATA)n Simple_repeat Simple_repeat 2 53 0 2442 69 25 30 chr15 33632754 33633116 -67747405 + L1PB1 LINE L1 5791 6150 -1 253 231 127 37 chr15 33633135 33633269 -67747252 - L1ME4a LINE L1 -407 6108 5963 28 0 0 0 chr15 33633900 33633928 -67746593 + AT_rich Low_complexity Low_complexity 1 28 0 1972 111 3 37 chr15 33634111 33634409 -67746112 + AluSq SINE Alu 20 307 -6 26 0 0 0 chr15 33635294 33635320 -67745201 + AT_rich Low_complexity Low_complexity 1 26 0 1568 239 134 75 chr15 33636310 33636705 -67743816 - L1ME4a LINE L1 -2055 4485 4115 2112 104 13 10 chr15 33636705 33637003 -67743518 - AluSg SINE Alu -11 299 1 1568 239 134 75 chr15 33637003 33637668 -67742853 - L1ME4a LINE L1 -2425 4115 3362 377 255 167 5 chr15 33637809 33638001 -67742520 - L1ME4a LINE L1 -3265 3275 3053 626 257 151 32 chr15 33638007 33638456 -67742065 - L1MEc LINE L1 -3716 2848 2365 308 183 95 66 chr15 33638711 33638848 -67741673 - L1M1 LINE L1 -4601 2964 2824 305 245 95 34 chr15 33638883 33639030 -67741491 - L1MEc LINE L1 -4823 1717 1562 361 174 14 14 chr15 33639952 33640021 -67740500 - MIR SINE MIR -22 240 172 28 48 0 0 chr15 33640080 33640122 -67740399 + AT_rich Low_complexity Low_complexity 1 42 0 932 238 14 14 chr15 33640723 33640933 -67739588 + MIR SINE MIR 7 216 -46 1551 225 73 37 chr15 33641672 33642126 -67738395 - LTR40a LTR ERVL -41 478 9 1358 199 88 0 chr15 33642229 33642501 -67738020 + AluJb SINE Alu 1 296 -16 571 282 167 31 chr15 33643137 33643935 -67736586 - L1M4 LINE L1 -869 5277 4372 264 30 0 0 chr15 33644589 33644622 -67735899 + (TG)n Simple_repeat Simple_repeat 2 34 0 280 235 25 67 chr15 33644847 33644966 -67735555 + L1MC5 LINE L1 7813 7926 -35 770 193 36 12 chr15 33645063 33645380 -67735141 - L1MB7 LINE L1 -16 6168 5719 1788 153 44 82 chr15 33646270 33646675 -67733846 - MLT1B LTR MaLR 0 390 1 673 139 49 28 chr15 33646679 33646823 -67733698 - MLT1B-int LTR MaLR -4 1367 1221 1295 241 58 6 chr15 33646823 33647151 -67733370 - MLT2D LTR ERVL -69 345 1 197 33 33 0 chr15 33649197 33649227 -67731294 + (TTG)n Simple_repeat Simple_repeat 2 32 0 2357 80 3 3 chr15 33651127 33651428 -67729093 - AluSq SINE Alu -12 301 1 251 248 181 0 chr15 33653473 33653578 -67726943 - MIR SINE MIR -58 204 81 1617 185 10 7 chr15 33654172 33654475 -67726046 - AluJo SINE Alu -8 304 1 2036 146 3 0 chr15 33855748 33856036 -67524485 + AluSx SINE Alu 1 289 -23 25 0 0 0 chr15 33856036 33856061 -67524460 + AT_rich Low_complexity Low_complexity 1 25 0 2232 85 0 7 chr15 33856097 33856380 -67524141 + AluSg SINE Alu 23 303 -7 750 268 79 45 chr15 33856614 33856968 -67523553 - L3 LINE CR1 -58 1519 1154 1819 158 3 31 chr15 33857044 33857361 -67523160 + AluJb SINE Alu 5 312 0 945 225 60 41 chr15 33857424 33857737 -67522784 + L1ME2 LINE L1 5837 6154 -10 1979 181 12 33 chr15 33858397 33858816 -67521705 + L1MC3 LINE L1 7355 7764 -21 743 216 36 0 chr15 33859088 33859255 -67521266 - L1ME LINE L1 -647 5517 5345 614 216 0 9 chr15 33859255 33859371 -67521150 - HERV16 LTR ERVL -3186 1810 1696 321 135 0 0 chr15 33859385 33859437 -67521084 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 509 202 124 0 chr15 33859437 33859566 -67520955 - AluJb SINE Alu -2 310 166 213 196 107 0 chr15 33859666 33859722 -67520799 + MIR SINE MIR 122 183 -79 788 297 84 53 chr15 33861095 33861681 -67518840 + MLT1L LTR MaLR 8 611 -4 976 254 69 51 chr15 33861814 33862306 -67518215 + MLT1H1 LTR MaLR 1 544 -5 1805 167 17 3 chr15 33862584 33862877 -67517644 + AluJb SINE Alu 1 297 -15 278 359 124 4 chr15 33865619 33865853 -67514668 + HAL1 LINE L1 2238 2499 -8 298 294 76 8 chr15 33866358 33866477 -67514044 - MIR3 SINE MIR -9 199 73 243 345 17 25 chr15 33868661 33868780 -67511741 + MIR SINE MIR 34 151 -111 633 133 0 10 chr15 33870260 33870358 -67510163 - AluS SINE Alu -215 98 2 827 148 9 124 chr15 33872051 33872261 -67508260 - MER5A DNA MER1_type -3 186 1 267 103 0 0 chr15 33873128 33873167 -67507354 + (CA)n Simple_repeat Simple_repeat 2 40 0 584 238 116 11 chr15 33873988 33874177 -67506344 - MER3 DNA MER1_type 0 209 1 1639 234 128 30 chr15 33875231 33875769 -67504752 + MLT1E2 LTR MaLR 21 611 -15 383 230 118 7 chr15 33876128 33876263 -67504258 - MIR SINE MIR -66 196 47 1360 203 77 59 chr15 33878573 33878962 -67501559 - MSTD LTR MaLR 0 396 1 668 218 38 28 chr15 33879117 33879328 -67501193 + L1ME3A LINE L1 4541 4753 -1393 1109 264 100 0 chr15 33879337 33879678 -67500843 + L1ME3A LINE L1 5568 5942 -228 1674 176 3 21 chr15 33879683 33879967 -67500554 - AluJo SINE Alu -31 281 3 466 227 36 9 chr15 33879990 33880100 -67500421 + MLT1H LTR MaLR 1 113 -436 829 166 41 6 chr15 33880101 33880270 -67500251 - MER96B DNA MER1_type? 0 417 243 235 253 51 25 chr15 33880359 33880438 -67500083 + MLT1H LTR MaLR 202 282 -267 3510 92 9 0 chr15 33880476 33880930 -67499591 + LTR22A LTR ERVK 1 458 0 234 204 0 0 chr15 33880996 33881040 -67499481 + MLT1H LTR MaLR 506 549 0 642 234 136 0 chr15 33881040 33881224 -67499297 + L1ME3A LINE L1 5948 6156 -14 2264 94 14 0 chr15 33881641 33881938 -67498583 - AluSx SINE Alu -11 301 1 648 269 34 10 chr15 33882419 33882627 -67497894 - MIR SINE MIR -35 227 15 180 0 0 0 chr15 33883003 33883023 -67497498 + (T)n Simple_repeat Simple_repeat 1 20 0 291 284 75 15 chr15 33884291 33884425 -67496096 + MIR SINE MIR 28 169 -93 3332 139 89 12 chr15 33884430 33885028 -67495493 - MER39B LTR ERV1 -4 649 6 260 250 36 24 chr15 33885044 33885128 -67495393 + MIR SINE MIR 178 262 0 362 301 58 26 chr15 33886347 33886503 -67494018 - L2 LINE L2 -33 3239 3079 388 306 64 50 chr15 33886559 33886778 -67493743 + MLT1I LTR MaLR 68 289 -120 330 224 11 32 chr15 33887407 33887528 -67492993 - L1MC4 LINE L1 0 8042 7873 2761 80 0 25 chr15 33887616 33887980 -67492541 + THE1A LTR MaLR 1 355 0 427 247 153 80 chr15 33888009 33888361 -67492160 + L1MC/D LINE L1 5295 5672 -449 2393 66 3 0 chr15 33888394 33888871 -67491650 + AluY SINE Alu 1 478 0 183 42 0 0 chr15 33888894 33888918 -67491603 + (A)n Simple_repeat Simple_repeat 1 24 0 702 248 86 14 chr15 33888985 33889207 -67491314 - MIR SINE MIR -21 241 4 2244 114 0 16 chr15 33889395 33889702 -67490819 + AluSg SINE Alu 1 302 -8 587 241 26 0 chr15 33889830 33889946 -67490575 + LTR16A LTR ERVL 326 444 -6 3611 282 96 48 chr15 33889962 33890859 -67489662 + HERV16 LTR ERVL 5 1004 -3992 5894 125 14 13 chr15 33890859 33891761 -67488760 - MER4D LTR ERV1 0 903 1 3611 282 96 48 chr15 33891761 33892367 -67488154 + HERV16 LTR ERVL 1004 1580 -3416 797 181 0 0 chr15 33892422 33892555 -67487966 + FLAM_C SINE Alu 1 133 0 405 0 0 0 chr15 33893731 33893776 -67486745 + (CTG)n Simple_repeat Simple_repeat 1 45 0 915 270 70 39 chr15 33894761 33895176 -67485345 + L2 LINE L2 2863 3290 -23 885 119 56 25 chr15 33895674 33895834 -67484687 - L1MA9 LINE L1 -38 6274 6110 398 235 0 12 chr15 33895834 33895915 -67484606 + Tigger5 DNA MER2_type 1 80 -2243 1896 160 99 8 chr15 33895955 33896256 -67484265 - L1MA9 LINE L1 -200 6112 5769 204 40 0 0 chr15 33896256 33896281 -67484240 + (CA)n Simple_repeat Simple_repeat 1 25 0 1896 160 99 8 chr15 33896281 33896354 -67484167 - L1MA9 LINE L1 -543 5769 5704 213 211 0 0 chr15 33896445 33896483 -67484038 + A-rich Low_complexity Low_complexity 5 42 0 360 198 33 11 chr15 33896839 33896930 -67483591 + MER5B DNA MER1_type 72 164 -14 653 271 49 31 chr15 33897095 33897190 -67483331 + MLT1L LTR MaLR 387 479 -136 2047 106 0 46 chr15 33897190 33897492 -67483029 + AluSx SINE Alu 15 302 -10 653 271 49 31 chr15 33897492 33897621 -67482900 + MLT1L LTR MaLR 479 615 0 3735 140 8 81 chr15 33899939 33900669 -67479852 - LTR8 LTR ERV1 -14 677 1 340 302 32 0 chr15 33900951 33901077 -67479444 - MIR SINE MIR -43 219 90 307 238 21 105 chr15 33901494 33901637 -67478884 - MIR SINE MIR -101 161 31 359 224 66 113 chr15 33901789 33901996 -67478525 - MER34 LTR ERV1 0 542 421 353 94 0 0 chr15 33902223 33902276 -67478245 - MADE1 DNA Mariner 0 80 28 2337 117 0 0 chr15 33903837 33904144 -67476377 + AluSx SINE Alu 3 309 -3 2325 100 0 0 chr15 33904281 33904572 -67475949 + AluSq SINE Alu 1 291 -22 1269 179 53 17 chr15 33904600 33904902 -67475619 - MER33 DNA MER1_type -11 313 1 1014 234 58 92 chr15 33905149 33905564 -67474957 - MLT1I LTR MaLR -3 406 6 259 315 65 28 chr15 33906100 33906208 -67474313 - MIR SINE MIR -62 146 35 1698 170 36 88 chr15 33906409 33906511 -67474010 + MLT1B LTR MaLR 1 107 -283 2177 112 10 0 chr15 33906511 33906805 -67473716 + AluSq SINE Alu 1 297 -16 1698 170 36 88 chr15 33906805 33907113 -67473408 + MLT1B LTR MaLR 107 390 0 204 40 0 0 chr15 33907460 33907485 -67473036 + (CA)n Simple_repeat Simple_repeat 1 25 0 523 212 218 21 chr15 33907521 33907714 -67472807 - MIR SINE MIR 0 262 32 377 274 0 11 chr15 33907864 33907959 -67472562 + L2 LINE L2 3214 3307 -6 21 0 0 0 chr15 33908664 33908685 -67471836 + AT_rich Low_complexity Low_complexity 1 21 0 1960 123 10 35 chr15 33908703 33909013 -67471508 - AluJo SINE Alu -10 302 1 1203 257 85 40 chr15 33909057 33909306 -67471215 - Charlie7 DNA MER1_type -1890 722 486 1751 148 9 90 chr15 33909306 33909638 -67470883 - AluJo SINE Alu -7 305 1 1203 257 85 40 chr15 33909638 33909894 -67470627 - Charlie7 DNA MER1_type -2126 486 194 716 143 8 0 chr15 33910767 33910893 -67469628 + CT-rich Low_complexity Low_complexity 1 127 0 1997 120 48 0 chr15 33910893 33911184 -67469337 - AluSx SINE Alu -7 305 1 2013 142 3 22 chr15 33911758 33912076 -67468445 + AluJb SINE Alu 1 312 0 212 299 140 9 chr15 33912817 33912924 -67467597 - L2 LINE L2 -5 3267 3147 2230 117 0 3 chr15 33913253 33913552 -67466969 - AluSq SINE Alu -15 298 1 189 0 0 0 chr15 33914170 33914191 -67466330 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 554 253 93 0 chr15 33914402 33914564 -67465957 - MER5B DNA MER1_type 0 178 2 825 216 0 29 chr15 33915251 33915422 -67465099 - FRAM SINE Alu 0 166 1 208 257 40 27 chr15 33916169 33916243 -67464278 + MIR SINE MIR 170 244 -18 209 250 16 31 chr15 33916491 33916555 -67463966 - L2 LINE L2 -191 3081 3019 1895 188 147 28 chr15 33916853 33917322 -67463199 + MLT1F LTR MaLR 9 533 -9 546 235 117 43 chr15 33917332 33917694 -67462827 + MLT1H LTR MaLR 31 586 -9 234 274 88 83 chr15 33917888 33918092 -67462429 - L2 LINE L2 -635 2679 2475 405 263 68 8 chr15 33919720 33919853 -67460668 - MIR3 SINE MIR -41 167 27 4700 154 21 20 chr15 33920814 33921319 -67459202 - L1MA8 LINE L1 -2 6289 5781 1594 121 27 5 chr15 33921319 33921543 -67458978 + MER30 DNA MER1_type 1 229 -1 4700 154 21 20 chr15 33921543 33921877 -67458644 - L1MA8 LINE L1 -510 5781 5449 1366 257 56 9 chr15 33921982 33922324 -67458197 - ERVL-F LTR ERVL -3629 2135 1778 763 318 86 66 chr15 33922322 33922746 -67457775 - ERVL-F LTR ERVL -4734 1030 616 * 2385 81 0 7 chr15 33922746 33923056 -67457465 - AluY SINE Alu -3 308 1 1359 218 21 14 chr15 33923066 33923351 -67457170 - AluJo SINE Alu -25 287 1 763 318 86 66 chr15 33923351 33923614 -67456907 - ERVL-F LTR ERVL -5156 608 318 491 127 9 100 chr15 33923638 33923748 -67456773 - MLT2F LTR ERVL 0 663 564 784 288 45 36 chr15 33923833 33924191 -67456330 + L1MEd LINE L1 423 783 -5747 189 0 0 0 chr15 33924233 33924254 -67456267 + (A)n Simple_repeat Simple_repeat 1 21 0 316 326 28 35 chr15 33924257 33924398 -67456123 + L1MEd LINE L1 813 952 -5578 555 306 24 45 chr15 33924745 33924905 -67455616 + L1MEd LINE L1 2454 2616 -3924 2181 109 19 22 chr15 33924905 33925218 -67455303 + AluSx SINE Alu 1 312 0 555 306 24 45 chr15 33925218 33925743 -67454778 + L1MEd LINE L1 2616 3123 -3417 385 283 0 11 chr15 33925744 33925836 -67454685 - MER5B DNA MER1_type -87 91 1 952 114 0 0 chr15 33926148 33926271 -67454250 + FLAM_C SINE Alu 1 123 -20 225 235 0 20 chr15 33927006 33927057 -67453464 + L2 LINE L2 3136 3185 -87 807 254 142 44 chr15 33927078 33927444 -67453077 + MLT1I LTR MaLR 7 408 -1 314 217 33 0 chr15 33927444 33927504 -67453017 + L2 LINE L2 3202 3263 -9 188 279 0 0 chr15 33927552 33927595 -67452926 + L2 LINE L2 3222 3264 -8 1643 182 0 32 chr15 33927618 33927926 -67452595 - AluJo SINE Alu -14 298 1 457 338 82 24 chr15 33928915 33929200 -67451321 + L2 LINE L2 2768 3066 -247 2052 235 67 23 chr15 33929541 33930141 -67450380 + L1MC4a LINE L1 5195 5315 -831 2243 117 85 20 chr15 33930141 33930483 -67450038 - THE1B LTR MaLR 0 364 1 2052 235 67 23 chr15 33930483 33930532 -67449989 + L1MC4a LINE L1 5315 5360 -786 289 291 103 0 chr15 33931149 33931266 -67449255 - LTR16C LTR ERVL -87 404 276 430 306 28 22 chr15 33931315 33931495 -67449026 - L1MC4a LINE L1 -1880 5928 5748 494 298 80 31 chr15 33933045 33933379 -67447142 - L1MC4a LINE L1 -688 5466 5150 219 114 0 0 chr15 33933379 33933414 -67447107 + (TA)n Simple_repeat Simple_repeat 1 35 0 494 298 80 31 chr15 33933414 33933951 -67446570 - L1MC4a LINE L1 -1004 5150 4567 21 0 0 0 chr15 33933999 33934020 -67446501 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 33934101 33934122 -67446399 + AT_rich Low_complexity Low_complexity 1 21 0 783 140 9 0 chr15 33934949 33935063 -67445458 + AluJb SINE Alu 2 116 -196 1139 137 55 6 chr15 33935139 33935322 -67445199 + AluJb SINE Alu 112 303 -9 1013 116 7 0 chr15 33935363 33935501 -67445020 - MER20 DNA MER1_type -48 171 33 1165 216 14 5 chr15 33936990 33937212 -67443309 - MER58A DNA MER1_type 0 224 1 327 256 25 106 chr15 33937917 33938116 -67442405 - L2 LINE L2 -119 3194 3012 384 263 59 63 chr15 33938224 33938558 -67441963 + L1ME4a LINE L1 5784 6110 -11 736 160 59 53 chr15 33938871 33939058 -67441463 - MER53 DNA DNA -1 188 1 519 296 53 6 chr15 33939395 33939564 -67440957 + MER5B DNA MER1_type 1 177 -1 546 196 20 0 chr15 33939672 33939774 -67440747 - MER5A DNA MER1_type -77 112 9 398 200 132 93 chr15 33940299 33940512 -67440009 + MIR SINE MIR 28 262 0 282 351 108 5 chr15 33941487 33941672 -67438849 - MIR SINE MIR 0 262 59 4056 29 0 4 chr15 33941771 33942218 -67438303 + L1PA5 LINE L1 5703 6149 -5 207 0 0 0 chr15 33942218 33942241 -67438280 + (TA)n Simple_repeat Simple_repeat 1 23 0 584 242 39 0 chr15 33942528 33942681 -67437840 + MER103 DNA DNA 7 165 -1 194 213 16 82 chr15 33942786 33942847 -67437674 + MER5A DNA MER1_type 9 65 -124 340 212 40 50 chr15 33942884 33942983 -67437538 - MLT1G LTR MaLR -290 300 203 250 48 71 0 chr15 33943002 33943044 -67437477 + MER5A DNA MER1_type 68 112 -77 777 279 205 18 chr15 33943163 33943650 -67436871 - MLT1H1 LTR MaLR -8 547 1 754 298 57 59 chr15 33943867 33944507 -67436014 - L2 LINE L2 -11 3302 2668 2133 121 0 7 chr15 33944507 33944804 -67435717 + AluSx SINE Alu 1 295 -17 754 298 57 59 chr15 33944804 33944923 -67435598 - L2 LINE L2 -645 2668 2550 257 284 15 0 chr15 33946363 33946430 -67434091 + GA-rich Low_complexity Low_complexity 6 73 0 1368 141 74 84 chr15 33946558 33946856 -67433665 + AluJo SINE Alu 1 295 -17 2543 11 0 0 chr15 33947750 33948027 -67432494 + AluYa5 SINE Alu 29 305 -6 480 291 116 10 chr15 33948300 33948499 -67432022 + MIR SINE MIR 36 255 -7 235 301 41 0 chr15 33948716 33948789 -67431732 - MIR3 SINE MIR -23 185 110 523 287 10 41 chr15 33949681 33949876 -67430645 - LTR16B LTR ERVL 0 464 276 900 114 8 0 chr15 33950029 33950160 -67430361 - AluSp/q SINE Alu -12 301 170 214 330 51 17 chr15 33950455 33950573 -67429948 + L2 LINE L2 3147 3268 -4 2199 113 36 0 chr15 33950746 33951047 -67429474 - AluSx SINE Alu 0 312 1 236 325 92 8 chr15 33951087 33951207 -67429314 - LTR67 LTR ERVL -76 481 352 194 0 0 37 chr15 33951764 33951791 -67428730 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2220 74 0 4 chr15 33952634 33952905 -67427616 + AluY SINE Alu 3 272 -39 1062 185 39 13 chr15 33952983 33953215 -67427306 - L1MB3 LINE L1 -5 6178 5941 387 257 119 0 chr15 33954065 33954166 -67426355 - L2 LINE L2 0 3313 3201 441 103 0 0 chr15 33956426 33956494 -67424027 + (CA)n Simple_repeat Simple_repeat 2 69 0 512 276 209 24 chr15 33956874 33957084 -67423437 - MIR SINE MIR -1 261 13 373 290 46 0 chr15 33957379 33957510 -67423011 + MIR SINE MIR 125 261 -1 211 268 86 35 chr15 33958273 33958442 -67422079 - MIR3 SINE MIR -70 192 15 493 273 20 0 chr15 33958580 33958730 -67421791 - MER103 DNA DNA -13 153 1 2286 90 0 27 chr15 33959255 33959556 -67420965 + AluSg SINE Alu 1 293 -17 253 179 0 0 chr15 33959898 33959937 -67420584 + MER34 LTR ERV1 7 45 -497 1982 211 57 13 chr15 33959940 33960396 -67420125 + MER39 LTR ERV1 232 707 0 27 0 0 0 chr15 33961217 33961244 -67419277 + AT_rich Low_complexity Low_complexity 1 27 0 282 241 38 0 chr15 33961261 33961340 -67419181 - MIR SINE MIR -77 185 104 224 220 0 11 chr15 33961466 33961494 -67419027 + (CA)n Simple_repeat Simple_repeat 1 28 -62 1857 160 95 45 chr15 33961494 33961937 -67418584 - MER31B LTR ERV1 -1 465 1 224 220 0 11 chr15 33961937 33961999 -67418522 + (CA)n Simple_repeat Simple_repeat 28 90 0 1375 200 27 37 chr15 33962055 33962355 -67418166 + AluJo SINE Alu 1 297 -15 2061 136 57 0 chr15 33962510 33962842 -67417679 - MER34B LTR ERV1 0 565 215 404 241 173 0 chr15 33962842 33962975 -67417546 - MER57A LTR ERV1 -53 350 195 1226 189 46 18 chr15 33963001 33963331 -67417190 - MER34B LTR ERV1 -281 222 1 892 224 57 99 chr15 33963738 33964056 -67416465 + LTR37A LTR ERV1 19 320 -106 2461 55 7 0 chr15 33964056 33964346 -67416175 - AluY SINE Alu -19 292 1 892 224 57 99 chr15 33964346 33964410 -67416111 + LTR37A LTR ERV1 320 385 -41 1134 187 66 116 chr15 33964453 33964833 -67415688 - MER39 LTR ERV1 -41 666 306 243 130 0 22 chr15 33964964 33965010 -67415511 + LTR37A LTR ERV1 382 426 0 1339 160 112 75 chr15 33965730 33966061 -67414460 + MER2 DNA MER2_type 1 343 -1 314 259 12 12 chr15 33966111 33966196 -67414325 + MER5A DNA MER1_type 4 88 -101 285 260 0 13 chr15 33966140 33966217 -67414304 - MER5A DNA MER1_type -22 167 92 * 473 296 15 0 chr15 33966511 33966646 -67413875 + MIR SINE MIR 2 138 -124 2778 121 100 55 chr15 33966652 33967212 -67413309 + MER34C LTR ERV1 1 585 0 218 292 22 34 chr15 33967274 33967363 -67413158 + MIR SINE MIR 175 262 0 2170 112 20 0 chr15 33967404 33967707 -67412814 + AluSq SINE Alu 1 309 -4 1708 171 42 0 chr15 33968656 33968943 -67411578 + AluJo SINE Alu 1 299 -13 243 235 30 68 chr15 33968959 33969091 -67411430 + MIR SINE MIR 69 195 -67 682 262 65 65 chr15 33969254 33969621 -67410900 - MLT1L LTR MaLR -248 367 1 202 268 84 0 chr15 33969737 33969808 -67410713 - MIR SINE MIR -49 213 137 5209 31 5 0 chr15 33969817 33970425 -67410096 - L1PA4 LINE L1 -3 6152 5542 5732 32 0 0 chr15 33970426 33971103 -67409418 + L1P LINE L1 2250 2926 -3220 221 298 202 11 chr15 33971204 33971298 -67409223 - MIR SINE MIR -124 138 27 298 244 24 12 chr15 33972850 33972932 -67407589 + MIR SINE MIR 69 151 -57 21 36 0 0 chr15 33972952 33972980 -67407541 + AT_rich Low_complexity Low_complexity 1 28 0 185 211 0 0 chr15 33973528 33973566 -67406955 - MIR3 SINE MIR -49 159 122 426 243 97 83 chr15 33973577 33973759 -67406762 + L1ME4a LINE L1 5590 5779 -342 2075 62 12 4 chr15 33973759 33974015 -67406506 - AluY SINE Alu -4 307 50 426 243 97 83 chr15 33974015 33974120 -67406401 + L1ME4a LINE L1 5779 5881 -240 697 170 0 0 chr15 33974613 33974719 -67405802 - LTR26B LTR ERV1 0 531 426 3084 117 16 43 chr15 33974719 33975337 -67405184 - MER4B LTR ERV1 0 779 1 1216 131 68 1 chr15 33975337 33975550 -67404971 - LTR26B LTR ERV1 -102 429 235 227 300 0 0 chr15 33975564 33975634 -67404887 + (CA)n Simple_repeat Simple_repeat 1 70 0 2427 95 0 3 chr15 33976621 33976927 -67403594 - AluSq SINE Alu -8 305 1 400 275 101 34 chr15 33979823 33980001 -67400520 + MIR SINE MIR 2 191 -71 41636 69 4 3 chr15 33980014 33986150 -67394371 - L1PA5 LINE L1 -6 6148 5 244 157 20 0 chr15 33986617 33986668 -67393853 - L1MC1 LINE L1 -1 6332 6281 1589 172 4 0 chr15 33986701 33986968 -67393553 - L1MC1 LINE L1 -45 6288 6021 362 147 207 164 chr15 33987246 33987421 -67393100 - ORSL DNA AcHobo 0 275 86 1896 165 6 22 chr15 33987421 33987737 -67392784 - AluJb SINE Alu -1 311 1 362 147 207 164 chr15 33987737 33987793 -67392728 - ORSL DNA AcHobo -189 86 34 399 310 105 0 chr15 33989989 33990160 -67390361 - MIR SINE MIR -72 190 2 555 241 47 51 chr15 33990499 33990752 -67389769 - MER112 DNA MER1_type -2 254 3 359 265 10 0 chr15 33990823 33990921 -67389600 + L2 LINE L2 2680 2778 -536 254 265 10 41 chr15 33991719 33991817 -67388704 + L2 LINE L2 3161 3255 -58 310 333 115 11 chr15 33992151 33992421 -67388100 - L2 LINE L2 -463 2851 2554 32857 100 13 53 chr15 33992859 33999254 -67381267 + L1PA7 LINE L1 12 6144 -10 210 247 0 47 chr15 33999719 33999804 -67380717 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 331 282 118 35 chr15 34001117 34001287 -67379234 + MIR SINE MIR 35 218 -44 1088 206 105 23 chr15 34003414 34003720 -67376801 + MER2 DNA MER2_type 14 344 -1 225 330 66 28 chr15 34003913 34004095 -67376426 + MER5A DNA MER1_type 1 189 0 492 164 67 0 chr15 34004537 34004701 -67375820 - L1PA16 LINE L1 -6 6160 5951 405 258 86 105 chr15 34006511 34006638 -67373883 - MIR SINE MIR 0 262 134 2020 142 13 7 chr15 34006638 34006948 -67373573 - AluSx SINE Alu 0 312 1 405 258 86 105 chr15 34006948 34007087 -67373434 - MIR SINE MIR -128 134 1 1853 173 16 3 chr15 34007698 34008005 -67372516 - AluJb SINE Alu -1 311 1 217 375 0 0 chr15 34008470 34008558 -67371963 - MIR3 SINE MIR -28 180 93 416 280 32 32 chr15 34009016 34009141 -67371380 - L2 LINE L2 0 3313 3189 1436 171 106 8 chr15 34009739 34010003 -67370518 - AluJb SINE Alu -12 290 1 863 193 60 0 chr15 34012255 34012421 -67368100 - FRAM SINE Alu -2 174 1 369 0 0 0 chr15 34012428 34012469 -67368052 + (TG)n Simple_repeat Simple_repeat 2 42 0 2024 130 17 0 chr15 34012469 34012770 -67367751 - AluSp SINE Alu -7 306 1 251 269 0 0 chr15 34013060 34013112 -67367409 + LTR30 LTR ERV1 1 52 -670 419 202 44 28 chr15 34013112 34013298 -67367223 + LTR12 LTR ERV1 100 270 -444 290 207 0 69 chr15 34013305 34013392 -67367129 + LTR30 LTR ERV1 544 624 -98 661 117 63 0 chr15 34013392 34013507 -67367014 + LTR12 LTR ERV1 359 582 -132 380 242 84 11 chr15 34013548 34013643 -67366878 - L2 LINE L2 -1 3271 3170 646 267 54 23 chr15 34013892 34014113 -67366408 + MIR SINE MIR 35 262 0 252 262 233 0 chr15 34014761 34014864 -67365657 + MIR SINE MIR 17 143 -65 2210 111 10 0 chr15 34015253 34015560 -67364961 - AluSx SINE Alu -2 310 1 820 307 46 24 chr15 34015597 34016056 -67364465 - L1ME3 LINE L1 -277 5885 5417 409 302 16 0 chr15 34017167 34017296 -67363225 - MER94 DNA DNA -1 133 3 366 314 102 0 chr15 34017337 34017474 -67363047 + L2 LINE L2 3122 3272 0 339 254 123 14 chr15 34017898 34018036 -67362485 - MIR3 SINE MIR -5 203 51 182 197 66 98 chr15 34019861 34019922 -67360599 - MER5A DNA MER1_type 0 189 131 222 213 259 9 chr15 34021257 34021365 -67359156 + L2 LINE L2 3158 3292 -21 3255 104 17 0 chr15 34021531 34022001 -67358520 - L1PA13 LINE L1 -20 6143 5664 2782 184 47 7 chr15 34022173 34022723 -67357798 + L1MB7 LINE L1 5610 6181 -3 2477 53 0 0 chr15 34022750 34023063 -67357458 + AluY SINE Alu 1 313 0 187 348 37 31 chr15 34023869 34024030 -67356491 - L2 LINE L2 -294 2978 2817 399 294 106 51 chr15 34026090 34026345 -67354176 + L2 LINE L2 3000 3268 -45 260 228 0 0 chr15 34026479 34026536 -67353985 - MLT2C1 LTR ERVL -8 389 333 282 145 53 15 chr15 34026541 34026672 -67353849 + (TA)n Simple_repeat Simple_repeat 2 137 0 2493 181 25 58 chr15 34026689 34027176 -67353345 - MLT2B2 LTR ERVL -44 471 1 662 310 270 19 chr15 34027771 34028442 -67352079 + L3 LINE CR1 728 1566 -11 951 303 85 6 chr15 34029605 34029935 -67350586 - LTR33 LTR ERVL -165 356 1 2362 180 0 5 chr15 34030541 34030908 -67349613 - MLT1A1 LTR MaLR 0 365 1 294 163 50 75 chr15 34031061 34031095 -67349426 - MLT1H1 LTR MaLR 0 555 522 1887 184 31 20 chr15 34031095 34031453 -67349068 - MLT1A1 LTR MaLR -3 362 1 294 163 50 75 chr15 34031453 34031498 -67349023 - MLT1H1 LTR MaLR -33 522 478 282 260 10 0 chr15 34031763 34031859 -67348662 + L1MEc LINE L1 1619 1715 -5006 455 298 116 31 chr15 34031899 34032376 -67348145 + L1MEc LINE L1 2400 2936 -3604 6181 143 113 8 chr15 34032376 34033490 -67347031 + Tigger3b DNA MER2_type 1 1231 0 455 298 116 31 chr15 34033490 34033577 -67346944 + L1MEc LINE L1 2936 3014 -3526 232 315 34 62 chr15 34033749 34033895 -67346626 - MLT1I LTR MaLR -169 240 99 563 279 141 46 chr15 34034099 34034711 -67345810 + L1MEc LINE L1 3238 3907 -2633 1921 149 30 0 chr15 34034806 34035101 -67345420 + AluSx SINE Alu 1 304 -8 200 222 0 0 chr15 34035301 34035346 -67345175 + (TA)n Simple_repeat Simple_repeat 2 46 0 2069 95 4 0 chr15 34036151 34036425 -67344096 - AluY SINE Alu -36 275 1 24 0 0 0 chr15 34036425 34036449 -67344072 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr15 34037670 34037698 -67342823 + AT_rich Low_complexity Low_complexity 1 28 0 201 241 98 107 chr15 34037902 34038014 -67342507 - L2 LINE L2 -1 3271 3161 184 281 123 0 chr15 34038706 34038763 -67341758 + L2 LINE L2 3169 3232 -40 181 364 133 7 chr15 34040208 34040359 -67340162 + MIR3 SINE MIR 20 189 -19 528 241 18 0 chr15 34040585 34040697 -67339824 + MER81 DNA DNA 1 114 0 2402 100 7 0 chr15 34040999 34041309 -67339212 - AluSx SINE Alu 0 312 1 382 265 163 34 chr15 34043060 34043207 -67337314 + MIR3 SINE MIR 33 198 -10 2596 140 13 75 chr15 34043956 34044479 -67336042 - L1MC3 LINE L1 0 7785 7295 1034 154 86 45 chr15 34044618 34044838 -67335683 - L1MC3 LINE L1 -501 7284 7056 320 352 162 23 chr15 34045175 34045829 -67334692 + L2 LINE L2 2000 2744 -570 645 305 47 0 chr15 34046534 34046747 -67333774 - MIR SINE MIR -32 230 8 2818 6 0 28 chr15 34046779 34047100 -67333421 + AluYb8 SINE Alu 1 312 -6 323 269 54 78 chr15 34048126 34048293 -67332228 + MIR SINE MIR 45 207 -55 432 299 106 27 chr15 34049285 34049470 -67331051 + MIR3 SINE MIR 3 203 -59 854 215 77 19 chr15 34049588 34049797 -67330724 - MER45C DNA AcHobo 0 953 733 280 288 15 0 chr15 34049824 34049890 -67330631 - MER45C DNA AcHobo -299 654 588 1918 178 125 18 chr15 34049908 34050291 -67330230 + MSTB LTR MaLR 1 424 -2 799 271 82 22 chr15 34050498 34050767 -67329754 - MER45C DNA AcHobo -666 287 3 193 306 180 9 chr15 34050793 34050904 -67329617 - MIR SINE MIR -88 174 45 1390 108 51 0 chr15 34051663 34051877 -67328644 + LTR39 LTR ERV1 1 225 -558 2880 165 114 13 chr15 34051877 34052423 -67328098 - LTR36 LTR ERV1 0 611 11 3518 154 13 4 chr15 34052431 34052988 -67327533 + LTR39 LTR ERV1 221 782 -1 399 287 201 6 chr15 34053665 34053839 -67326682 + MIR SINE MIR 29 236 -26 240 35 0 0 chr15 34054841 34054870 -67325651 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 343 289 82 35 chr15 34055984 34056137 -67324384 - MIR SINE MIR -58 150 42 192 231 0 0 chr15 34056160 34056199 -67324322 + MIR SINE MIR 105 143 -65 700 251 17 28 chr15 34057015 34057194 -67323327 + MER5B DNA MER1_type 1 177 -1 501 295 61 7 chr15 34057737 34057959 -67322562 + MIR SINE MIR 24 255 -7 271 170 21 0 chr15 34058700 34058747 -67321774 - L2 LINE L2 -18 3254 3207 2447 68 0 0 chr15 34059956 34060249 -67320272 + AluY SINE Alu 1 293 -18 700 159 26 0 chr15 34060446 34060559 -67319962 - FLAM_C SINE Alu -1 142 27 50 31 0 0 chr15 34061621 34061685 -67318836 + AT_rich Low_complexity Low_complexity 1 64 0 291 239 74 37 chr15 34061689 34061852 -67318669 + MER113 DNA MER1_type? 2 170 -351 229 250 31 16 chr15 34061887 34061951 -67318570 + MER113 DNA MER1_type? 454 518 -3 246 32 0 0 chr15 34063364 34063395 -67317126 + (TG)n Simple_repeat Simple_repeat 2 32 0 347 261 68 50 chr15 34064209 34064318 -67316203 + MIR3 SINE MIR 44 158 -50 1520 218 3 7 chr15 34064318 34064607 -67315914 - AluJo SINE Alu -23 289 2 347 261 68 50 chr15 34064607 34064658 -67315863 + MIR3 SINE MIR 158 207 -1 476 276 26 0 chr15 34064784 34064900 -67315621 + MIR SINE MIR 59 177 -85 718 253 0 22 chr15 34066548 34066730 -67313791 + MER5B DNA MER1_type 1 178 0 291 54 0 0 chr15 34066888 34066925 -67313596 + (CA)n Simple_repeat Simple_repeat 2 38 0 465 307 80 7 chr15 34067062 34067212 -67313309 + MIR3 SINE MIR 32 192 -16 205 129 0 0 chr15 34067378 34067409 -67313112 + MIR SINE MIR 47 77 -131 1634 157 23 20 chr15 34067512 34067818 -67312703 + AluJb SINE Alu 1 307 -5 353 283 107 23 chr15 34068564 34068741 -67311780 + MER117 DNA MER1_type 1 192 -5 205 254 91 0 chr15 34069918 34069973 -67310548 - L3 LINE CR1 -7 1570 1511 211 182 0 105 chr15 34070262 34070328 -67310193 - MIR SINE MIR -60 148 102 21 36 0 0 chr15 34070577 34070605 -67309916 + AT_rich Low_complexity Low_complexity 1 28 0 37673 91 14 8 chr15 34070605 34076700 -67303821 - L1PA6 LINE L1 -13 6141 11 285 364 31 16 chr15 34077422 34077551 -67302970 - MIR SINE MIR -108 154 24 1755 273 33 27 chr15 34077817 34078330 -67302191 + LTR33 LTR ERVL 3 518 -3 243 317 3 26 chr15 34078890 34079004 -67301517 + MIR SINE MIR 1 110 -98 388 296 30 7 chr15 34079235 34079370 -67301151 + MERVL LTR ERVL 3201 3338 -2147 681 269 77 24 chr15 34079380 34079734 -67300787 - MLT1C LTR MaLR -2 465 78 43350 37 23 1 chr15 34079740 34085754 -67294767 + L1PA3 LINE L1 4 6155 0 1724 91 0 5 chr15 34085844 34086065 -67294456 - L1PA8 LINE L1 -14 6158 5939 452 287 41 0 chr15 34086113 34086235 -67294286 + MERVL LTR ERVL 3383 3509 -2255 1202 349 88 11 chr15 34086278 34087028 -67293493 + MERVL LTR ERVL 3544 4351 -1303 717 371 57 14 chr15 34087264 34087895 -67292626 + MERVL LTR ERVL 4682 5339 -315 1841 141 57 3 chr15 34088186 34088483 -67292038 - AluSq SINE Alu 0 313 1 787 271 72 12 chr15 34088485 34088890 -67291631 + LTR33 LTR ERVL 31 514 -7 370 316 44 0 chr15 34089255 34089369 -67291152 - L2 LINE L2 -2 3311 3193 194 196 0 89 chr15 34091944 34092000 -67288521 + L2 LINE L2 3262 3312 -1 1048 127 0 11 chr15 34092101 34092140 -67288381 + (TTCC)n Simple_repeat Simple_repeat 1 217 0 1048 127 0 11 chr15 34092140 34092321 -67288200 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 2822 222 87 33 chr15 34093641 34094414 -67286107 - L1ME1 LINE L1 -18 6148 5327 234 0 0 0 chr15 34094414 34094440 -67286081 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 2822 222 87 33 chr15 34094440 34094481 -67286040 - L1ME1 LINE L1 -839 5327 5290 * 33174 104 10 56 chr15 34094480 34100913 -67279608 - L1PA7 LINE L1 -20 6134 12 467 123 49 0 chr15 34100947 34101028 -67279493 - L1MA6 LINE L1 0 6300 6216 260 191 36 24 chr15 34101089 34101106 -67279415 - L1ME1 LINE L1 -870 5276 5261 1809 75 34 41 chr15 34101106 34101374 -67279147 - L1MA1 LINE L1 0 6302 6037 260 191 36 24 chr15 34101374 34101440 -67279081 - L1ME1 LINE L1 -885 5261 5192 1320 286 78 13 chr15 34101618 34102080 -67278441 - L2 LINE L2 0 3313 2822 1990 199 54 7 chr15 34102106 34102513 -67278008 + MER63B DNA MER1_type 1 426 -10 3399 256 94 35 chr15 34102526 34103723 -67276798 - L2 LINE L2 -481 2833 1567 379 354 75 54 chr15 34103881 34104308 -67276213 + L2 LINE L2 1261 1696 -1618 208 344 53 26 chr15 34104587 34104738 -67275783 - L3b LINE CR1 -208 1375 1221 275 264 172 0 chr15 34105652 34105739 -67274782 + MIR3 SINE MIR 100 201 -7 502 325 98 20 chr15 34106676 34106971 -67273550 - MLT1I LTR MaLR -11 398 81 400 357 53 65 chr15 34108147 34108503 -67272018 - L2 LINE L2 0 3272 2921 726 279 44 24 chr15 34108715 34108966 -67271555 + MIR SINE MIR 1 256 -6 2037 35 0 0 chr15 34109050 34109281 -67271240 - L1PA4 LINE L1 0 6155 5925 207 0 0 0 chr15 34109543 34109566 -67270955 + (TTG)n Simple_repeat Simple_repeat 2 24 0 229 255 20 41 chr15 34109871 34109899 -67270622 + LTR67 LTR ERVL 457 551 -5 267 261 14 0 chr15 34109899 34109968 -67270553 + MLT1K LTR MaLR 513 582 -6 219 339 70 17 chr15 34110213 34110328 -67270193 - L2 LINE L2 -223 3049 2929 183 179 103 0 chr15 34110337 34110376 -67270145 - L2 LINE L2 -6 3266 3224 7262 78 3 1 chr15 34110488 34111786 -67268735 + L1PA8 LINE L1 4871 6170 -2 290 125 12 113 chr15 34111844 34111924 -67268597 - L1M4 LINE L1 -1899 4247 4176 297 254 173 0 chr15 34111970 34112080 -67268441 + L2 LINE L2 1214 1342 -1972 5331 54 0 8 chr15 34112180 34112810 -67267711 + L1PA6 LINE L1 5530 6154 0 948 138 7 0 chr15 34113235 34113387 -67267134 - L1MA4 LINE L1 -8 6292 6140 243 250 59 15 chr15 34113493 34113561 -67266960 + MIR SINE MIR 118 188 -74 444 304 78 70 chr15 34114986 34115331 -67265190 + L2 LINE L2 2922 3269 -3 457 360 101 29 chr15 34115423 34115831 -67264690 + L3b LINE CR1 1108 1544 -39 1990 199 70 41 chr15 34118161 34118644 -67261877 - MLT1D LTR MaLR -8 497 1 514 342 53 13 chr15 34118792 34119020 -67261501 + MIR SINE MIR 18 254 -8 290 95 0 0 chr15 34119020 34119062 -67261459 + MADE1 DNA Mariner 39 80 0 605 242 105 0 chr15 34120156 34120309 -67260212 - MLT1H LTR MaLR 0 549 381 948 253 20 29 chr15 34120344 34120589 -67259932 - MLT1H LTR MaLR -247 302 60 27 29 0 0 chr15 34120662 34120696 -67259825 + AT_rich Low_complexity Low_complexity 1 34 0 2761 97 16 11 chr15 34120828 34121201 -67259320 + THE1C LTR MaLR 1 375 0 2347 190 33 2 chr15 34121786 34122212 -67258309 - L1MB1 LINE L1 -1 6167 5729 2417 133 11 49 chr15 34122226 34122679 -67257842 + L1MB1 LINE L1 5296 5731 -437 227 238 0 32 chr15 34123622 34123685 -67256836 + L2 LINE L2 3201 3261 -11 331 292 85 15 chr15 34127466 34127596 -67252925 + MIR SINE MIR 124 262 0 688 264 102 0 chr15 34128071 34128268 -67252253 - MIR SINE MIR -1 261 45 233 237 84 99 chr15 34128568 34128699 -67251822 - MIR3 SINE MIR -46 162 34 1571 110 0 0 chr15 34128803 34129003 -67251518 + AluSg/x SINE Alu 100 299 -13 13880 91 10 3 chr15 34129609 34132209 -67248312 - L1PA7 LINE L1 0 6154 3523 2014 99 0 37 chr15 34132283 34132577 -67247944 - AluY SINE Alu -5 306 24 44521 43 3 2 chr15 34132973 34139116 -67241405 - L1PA3 LINE L1 0 6155 2 192 297 33 33 chr15 34139410 34139501 -67241020 - L2 LINE L2 0 3313 3223 2250 87 0 20 chr15 34139549 34139847 -67240674 - AluY SINE Alu -19 292 1 322 309 64 0 chr15 34140027 34140137 -67240384 + L2 LINE L2 3160 3276 -37 2217 132 0 0 chr15 34141697 34142001 -67238520 - AluSc SINE Alu -5 304 1 1202 154 0 0 chr15 34143176 34143351 -67237170 + AluJo SINE Alu 1 175 -137 188 328 60 15 chr15 34143475 34143542 -67236979 - MIR3 SINE MIR -42 166 97 1888 170 3 3 chr15 34143987 34144348 -67236173 - AluJo SINE Alu 0 361 1 2530 67 0 6 chr15 34144897 34145209 -67235312 - AluY SINE Alu 0 311 2 24 32 0 0 chr15 34145592 34145623 -67234898 + AT_rich Low_complexity Low_complexity 1 31 0 2706 49 0 0 chr15 34146069 34146377 -67234144 + AluY SINE Alu 1 308 -3 28 0 0 0 chr15 34146638 34146666 -67233855 + AT_rich Low_complexity Low_complexity 1 28 0 925 284 52 52 chr15 34147177 34147673 -67232848 - L2 LINE L2 0 3313 2818 1594 234 64 51 chr15 34147715 34148185 -67232336 - MER45C DNA AcHobo 0 953 478 1401 274 18 0 chr15 34148244 34148583 -67231938 - MER45C DNA AcHobo -600 353 9 371 254 239 24 chr15 34148590 34148687 -67231834 - L2 LINE L2 -518 2796 2721 2119 128 0 3 chr15 34148687 34148992 -67231529 + AluSx SINE Alu 1 304 -8 371 254 239 24 chr15 34148992 34149103 -67231418 - L2 LINE L2 -593 2721 2543 21 0 0 0 chr15 34149334 34149355 -67231166 + AT_rich Low_complexity Low_complexity 1 21 0 9515 45 1 9 chr15 34149576 34149624 -67230897 + L1P LINE L1 4061 4108 -2038 7724 39 23 0 chr15 34149624 34150553 -67229968 - L1PA5 LINE L1 0 6154 5224 9515 45 1 9 chr15 34150553 34151670 -67228851 + L1PA5 LINE L1 4108 5217 -929 298 260 9 151 chr15 34153846 34154065 -67226456 - MIR3 SINE MIR -3 205 18 547 322 105 30 chr15 34155102 34155397 -67225124 - L2 LINE L2 -17 3255 2939 530 69 97 0 chr15 34157432 34157504 -67223017 + MADE1 DNA Mariner 2 80 0 701 238 52 43 chr15 34158895 34159067 -67221454 - L2 LINE L2 -1 3312 3136 1261 232 42 62 chr15 34159067 34159468 -67221053 + MLT2C1 LTR ERVL 1 393 -4 701 238 52 43 chr15 34159468 34159526 -67220995 - L2 LINE L2 -177 3136 3080 245 271 49 62 chr15 34160695 34160839 -67219682 - L2 LINE L2 0 3313 3172 218 328 0 0 chr15 34161181 34161242 -67219279 + L2 LINE L2 3249 3309 -4 279 81 0 0 chr15 34161699 34161736 -67218785 - AluSp SINE Alu -133 170 134 21 57 0 0 chr15 34162066 34162101 -67218420 + AT_rich Low_complexity Low_complexity 1 35 0 285 29 0 0 chr15 34162204 34162238 -67218283 + (TG)n Simple_repeat Simple_repeat 2 35 0 364 299 58 19 chr15 34162541 34162695 -67217826 - MIR SINE MIR -4 258 99 417 356 78 7 chr15 34164254 34164538 -67215983 + L2 LINE L2 2298 2601 -713 1320 210 45 0 chr15 34165866 34166109 -67214412 + Tigger7 DNA MER2_type 2 255 -2232 303 256 26 0 chr15 34166107 34166185 -67214336 + Tigger7 DNA MER2_type 2408 2487 0 * 5377 141 40 0 chr15 34167340 34168218 -67212303 - L1MA4 LINE L1 0 6300 5388 521 200 0 92 chr15 34168368 34168498 -67212023 - MLT1I LTR MaLR 0 409 292 2995 171 5 56 chr15 34168566 34169139 -67211382 + MLT2B3 LTR ERVL 3 546 -8 317 91 0 0 chr15 34169182 34169226 -67211295 + tRNA-Cys-TGC tRNA tRNA 2 45 -30 523 138 53 32 chr15 34169323 34169417 -67211104 - L1MC2 LINE L1 -13 6331 6236 1481 188 14 17 chr15 34169468 34169755 -67210766 - AluJb SINE Alu -26 286 1 360 100 22 133 chr15 34169756 34169846 -67210675 - L1MC2 LINE L1 -1931 5854 5775 510 254 34 0 chr15 34169857 34169975 -67210546 - MLT1I LTR MaLR -277 132 11 2784 155 9 7 chr15 34170275 34170708 -67209813 + MER57B LTR ERV1 1 434 0 1151 214 255 23 chr15 34170805 34171387 -67209134 - LTR50 LTR ERVL -43 683 1 349 306 155 27 chr15 34171939 34172158 -67208363 + MIR SINE MIR 6 252 -10 444 222 196 26 chr15 34173221 34173415 -67207106 - MLT1L LTR MaLR -46 569 343 411 207 24 134 chr15 34173584 34173635 -67206886 - MIR SINE MIR 0 262 207 1970 131 0 0 chr15 34173635 34173932 -67206589 - AluSx SINE Alu 0 307 11 411 207 24 134 chr15 34173932 34174043 -67206478 - MIR SINE MIR -55 207 117 574 242 51 66 chr15 34174044 34174300 -67206221 - MER112 DNA MER1_type -1 259 8 452 260 58 0 chr15 34174311 34174415 -67206106 - MIR SINE MIR -151 111 2 218 305 182 13 chr15 34174739 34174893 -67205628 - MIR3 SINE MIR -13 195 16 210 71 0 0 chr15 34175150 34175178 -67205343 + (T)n Simple_repeat Simple_repeat 1 28 0 206 313 0 50 chr15 34176430 34176510 -67204011 + MIR3 SINE MIR 10 85 -123 359 117 39 71 chr15 34176562 34176716 -67203805 + (TA)n Simple_repeat Simple_repeat 2 150 0 257 250 171 29 chr15 34176716 34176856 -67203665 - MIR SINE MIR -101 161 2 * 289 266 94 31 chr15 34176856 34176971 -67203550 + MIR3 SINE MIR 79 201 -7 7072 69 25 0 chr15 34178731 34179874 -67200647 + L1PA8 LINE L1 5006 6170 -2 290 125 12 113 chr15 34179932 34180012 -67200509 - L1M4 LINE L1 -1899 4247 4176 832 246 102 35 chr15 34180058 34180343 -67200178 + L2 LINE L2 1214 1517 -1797 961 296 141 22 chr15 34180344 34181175 -67199346 - L1M4 LINE L1 -2327 3819 2890 36 40 0 0 chr15 34181368 34181418 -67199103 + AT_rich Low_complexity Low_complexity 1 50 0 851 222 19 3 chr15 34181525 34181793 -67198728 - MLT1A1 LTR MaLR 0 365 1 226 203 177 63 chr15 34182466 34182624 -67197897 - L1ME4a LINE L1 -18 6103 5928 1797 165 28 3 chr15 34182916 34183207 -67197314 + AluSx SINE Alu 1 298 -14 1361 266 81 16 chr15 34233772 34234457 -67146064 + L2 LINE L2 2587 3313 0 2035 47 16 0 chr15 34235239 34235496 -67145025 - L1PA7 LINE L1 -2 6152 5892 858 108 0 0 chr15 34235761 34235881 -67144640 + AluSq/x SINE Alu 1 120 -193 1281 88 0 0 chr15 34237517 34237676 -67142845 - AluSc SINE Alu -150 159 1 254 380 0 0 chr15 34238314 34238456 -67142065 - MER117 DNA MER1_type 0 197 56 877 137 0 0 chr15 34238667 34238806 -67141715 + MER4B LTR ERV1 1 139 -471 193 250 0 0 chr15 34239556 34239596 -67140925 - L2 LINE L2 -253 3060 3021 2163 73 0 7 chr15 34239596 34239869 -67140652 - AluY SINE Alu -10 301 31 888 113 14 0 chr15 34239869 34240010 -67140511 - L1PA15-16 LINE L1 -4976 1873 1731 1257 232 21 18 chr15 34240019 34240346 -67140175 - L1PA15-16 LINE L1 -5257 1592 1265 1202 131 44 0 chr15 34240506 34240712 -67139809 - L1PB2 LINE L1 0 6151 5937 1489 221 3 3 chr15 34240812 34241115 -67139406 + MLT1A1 LTR MaLR 36 338 -27 395 233 200 9 chr15 34241126 34241245 -67139276 + MER112 DNA MER1_type 1 96 -160 768 11 0 0 chr15 34241245 34241334 -67139187 + (CTATG)n Simple_repeat Simple_repeat 2 90 0 395 233 200 9 chr15 34241334 34241429 -67139092 + MER112 DNA MER1_type 96 256 0 339 374 88 3 chr15 34241617 34241911 -67138610 - L2 LINE L2 -1274 2040 1722 1383 120 15 5 chr15 34242614 34242814 -67137707 - AluSc SINE Alu -3 306 105 21 0 0 0 chr15 34243023 34243044 -67137477 + AT_rich Low_complexity Low_complexity 1 21 0 222 405 24 0 chr15 34244508 34244634 -67135887 + L3 LINE CR1 1446 1574 -3 286 258 21 43 chr15 34245625 34245718 -67134803 + L2 LINE L2 3175 3265 -48 2803 10 0 3 chr15 34245942 34246253 -67134268 - AluYa5 SINE Alu 0 311 2 828 270 115 32 chr15 34246711 34247214 -67133307 - L1ME3A LINE L1 -5 6165 5621 2076 116 10 10 chr15 34247225 34247518 -67133003 - AluSx SINE Alu -17 295 3 23 68 0 0 chr15 34247619 34247663 -67132858 + AT_rich Low_complexity Low_complexity 1 44 0 548 14 0 0 chr15 34247747 34247816 -67132705 + L1PA2 LINE L1 6083 6151 -4 5153 146 13 3 chr15 34248660 34250089 -67130432 - L1PA16 LINE L1 -9 6157 4718 776 155 0 0 chr15 34250194 34250323 -67130198 - L1M2 LINE L1 -541 5771 5643 280 263 177 5 chr15 34250372 34250581 -67129940 - LTR33 LTR ERVL -20 501 257 2499 41 0 0 chr15 34251229 34251520 -67129001 - AluY SINE Alu -20 291 1 373 325 186 5 chr15 34251578 34251772 -67128749 + MIR SINE MIR 34 262 0 234 0 0 0 chr15 34252333 34252359 -67128162 + (T)n Simple_repeat Simple_repeat 1 26 0 199 308 124 72 chr15 34253430 34253585 -67126936 + L2 LINE L2 1950 2096 -1218 1712 145 20 110 chr15 34253585 34253984 -67126537 - MLT1A1 LTR MaLR 0 365 3 199 308 124 72 chr15 34253984 34254367 -67126154 + L2 LINE L2 2096 2516 -798 23 68 0 0 chr15 34255049 34255093 -67125428 + AT_rich Low_complexity Low_complexity 1 44 0 201 339 73 26 chr15 34255625 34255817 -67124704 + L2 LINE L2 1993 2193 -1121 920 60 8 0 chr15 34255858 34255975 -67124546 - L1PA8 LINE L1 -15 6157 6040 232 128 0 0 chr15 34255975 34256014 -67124507 + L1P LINE L1 2716 2754 -3392 185 301 108 12 chr15 34256220 34256303 -67124218 + L2 LINE L2 2439 2529 -785 452 286 122 31 chr15 34256431 34256725 -67123796 + L2 LINE L2 2406 2726 -588 940 242 62 62 chr15 34256728 34257244 -67123277 - L1MCc LINE L1 -1792 5149 4634 6333 204 44 14 chr15 34257255 34260543 -67119978 - L1MCc LINE L1 -2946 3995 614 713 200 31 128 chr15 34260545 34260943 -67119578 - L1M4 LINE L1 -3195 2951 2601 1674 80 0 9 chr15 34260943 34261155 -67119366 - AluY SINE Alu -16 295 86 713 200 31 128 chr15 34261155 34261211 -67119310 - L1M4 LINE L1 -3545 2601 2541 855 251 74 67 chr15 34261303 34261750 -67118771 - L1MCc LINE L1 -5961 462 13 285 296 0 0 chr15 34261793 34261874 -67118647 - HAL1 LINE L1 -2195 312 232 22 0 0 0 chr15 34262240 34262262 -67118259 + AT_rich Low_complexity Low_complexity 1 22 0 1974 118 0 28 chr15 34262277 34262565 -67117956 - AluSx SINE Alu -30 282 3 864 208 17 17 chr15 34263033 34263206 -67117315 + MER5B DNA MER1_type 1 173 -5 22 35 0 0 chr15 34263532 34263561 -67116960 + AT_rich Low_complexity Low_complexity 1 29 0 2006 181 69 16 chr15 34263730 34264166 -67116355 + LOR1b LTR ERV1 3 461 0 2466 45 3 0 chr15 34265361 34265711 -67114810 - AluY SINE Alu 0 351 1 238 281 68 64 chr15 34266426 34266661 -67113860 + L1ME LINE L1 5542 5780 -341 312 205 26 13 chr15 34266661 34266739 -67113782 - MER116 DNA Mariner -1 79 1 238 281 68 64 chr15 34266739 34266784 -67113737 + L1ME LINE L1 5780 5823 -298 180 152 0 0 chr15 34266869 34266902 -67113619 + (CA)n Simple_repeat Simple_repeat 1 33 0 2147 113 7 16 chr15 34267716 34268049 -67112472 - AluSg SINE Alu 0 330 1 21 0 0 0 chr15 34268164 34268185 -67112336 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr15 34271556 34271582 -67108939 + AT_rich Low_complexity Low_complexity 1 26 0 189 74 0 0 chr15 34272532 34272559 -67107962 + (CCCA)n Simple_repeat Simple_repeat 2 28 0 30 83 0 0 chr15 34272567 34272639 -67107882 + AT_rich Low_complexity Low_complexity 1 72 0 8251 123 101 1 chr15 34272930 34274340 -67106181 - Tigger1 DNA MER2_type -1 2417 868 2124 134 20 3 chr15 34274345 34274695 -67105826 - L1PA15 LINE L1 -20 6145 5790 * 11251 214 26 17 chr15 34274686 34274764 -67105757 - L1PA15 LINE L1 -593 5572 5496 2288 74 0 0 chr15 34274764 34275075 -67105446 - AluY SINE Alu 0 311 1 11251 214 26 17 chr15 34275075 34275250 -67105271 - L1PA15 LINE L1 -669 5496 5324 2322 111 0 9 chr15 34275250 34275565 -67104956 - AluSp SINE Alu -1 312 1 11251 214 26 17 chr15 34275565 34278606 -67101915 - L1PA15 LINE L1 -841 5324 2244 249 83 0 0 chr15 34279136 34279172 -67101349 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 1866 126 47 4 chr15 34279193 34279470 -67101051 - AluSx SINE Alu -19 293 5 5999 92 9 26 chr15 34279526 34281074 -67099447 + L1PA10 LINE L1 4632 6150 -18 443 300 163 12 chr15 34281095 34281335 -67099186 - L2 LINE L2 -61 3252 2977 304 283 165 110 chr15 34282531 34282803 -67097718 - L2 LINE L2 0 3272 2986 512 230 79 0 chr15 34283063 34283189 -67097332 - MIR SINE MIR -56 206 71 382 226 0 48 chr15 34283266 34283350 -67097171 - L2 LINE L2 -4 3309 3230 326 266 64 0 chr15 34284509 34284603 -67095918 + MIR SINE MIR 65 164 -98 1702 129 94 15 chr15 34286493 34286834 -67093687 - THE1C LTR MaLR 0 375 8 398 239 106 21 chr15 34286842 34286984 -67093537 + MIR SINE MIR 32 185 -77 2288 84 0 47 chr15 34287854 34288174 -67092347 - AluSg SINE Alu -5 305 1 629 184 86 0 chr15 34288569 34288732 -67091789 - L1MA9 LINE L1 -38 6274 6098 292 111 0 0 chr15 34288849 34288894 -67091627 - MER2 DNA MER2_type -138 207 163 4026 234 36 35 chr15 34289010 34290035 -67090486 - L1PA13 LINE L1 -3817 2980 1958 1974 129 30 10 chr15 34290035 34290338 -67090183 - AluSc SINE Alu 0 309 1 4026 234 36 35 chr15 34290338 34291787 -67088734 - L1PA13 LINE L1 -4839 1958 5 4704 189 6 2 chr15 34291796 34292680 -67087841 - Tigger1 DNA MER2_type -1527 891 5 279 252 244 4 chr15 34292795 34292933 -67087588 + HAL1 LINE L1 1040 1144 -1363 833 105 23 8 chr15 34292933 34293066 -67087455 - L1MA4 LINE L1 -11 6289 6155 279 252 244 4 chr15 34293066 34293181 -67087340 + HAL1 LINE L1 1144 1354 -1153 3173 100 14 8 chr15 34293235 34293717 -67086804 + L1PA13 LINE L1 5678 6162 -1 765 275 158 7 chr15 34294083 34294487 -67086034 + HAL1 LINE L1 1406 1870 -637 464 222 61 25 chr15 34294490 34294688 -67085833 + HAL1 LINE L1 1956 2160 -347 446 281 145 56 chr15 34295129 34295432 -67085089 + MER102a DNA MER1_type 1 330 0 192 277 168 10 chr15 34295834 34295935 -67084586 + MIR3 SINE MIR 2 118 -90 7355 153 16 22 chr15 34296041 34297905 -67082616 + L1PB1 LINE L1 3663 5510 -641 1906 135 0 25 chr15 34297905 34298186 -67082335 - AluSx SINE Alu -36 276 3 7355 153 16 22 chr15 34298186 34298821 -67081700 + L1PB1 LINE L1 5510 6147 -4 233 241 48 36 chr15 34299424 34299507 -67081014 + MER94 DNA DNA 16 99 -35 320 164 49 0 chr15 34299523 34299584 -67080937 + MIR SINE MIR 197 260 -2 528 321 67 75 chr15 34301269 34301765 -67078756 - L2 LINE L2 -8 3305 2814 293 363 20 0 chr15 34301861 34301963 -67078558 - MIR SINE MIR -88 120 17 411 194 119 0 chr15 34302291 34302425 -67078096 + MER113 DNA MER1_type? 1 150 -371 223 374 136 20 chr15 34302664 34302862 -67077659 + L2 LINE L2 2553 2773 -541 198 0 0 0 chr15 34303975 34303997 -67076524 + (CA)n Simple_repeat Simple_repeat 1 22 0 1070 119 0 0 chr15 34304006 34304149 -67076372 - AluSg/x SINE Alu -19 293 151 266 318 159 8 chr15 34305738 34305864 -67074657 - MIR SINE MIR -70 192 48 285 284 69 15 chr15 34306838 34307042 -67073479 - L1ME LINE L1 -376 5745 5531 21 0 0 0 chr15 34307071 34307092 -67073429 + AT_rich Low_complexity Low_complexity 1 21 0 565 138 23 89 chr15 34308017 34308156 -67072365 - MLT1D LTR MaLR -313 154 21 2195 103 13 0 chr15 34309142 34309442 -67071079 + AluY SINE Alu 1 304 -7 263 347 0 0 chr15 34309447 34309522 -67070999 - MIR SINE MIR -157 105 31 26 0 0 0 chr15 34310017 34310043 -67070478 + AT_rich Low_complexity Low_complexity 1 26 0 319 214 24 12 chr15 34310229 34310313 -67070208 + AluJ/FLAM SINE Alu 18 102 -200 383 229 10 0 chr15 34310363 34310459 -67070062 - L1MD1 LINE L1 -410 5832 5736 1019 167 52 0 chr15 34310590 34310764 -67069757 + AluJo SINE Alu 120 302 -10 459 217 9 0 chr15 34311164 34311270 -67069251 + L1ME1 LINE L1 5733 5839 -327 2475 152 7 7 chr15 34311605 34312053 -67068468 + L1MA5 LINE L1 5853 6300 0 260 213 49 0 chr15 34312214 34312275 -67068246 + L2 LINE L2 3242 3305 -8 753 181 0 0 chr15 34312717 34312844 -67067677 + FLAM_C SINE Alu 1 127 -16 872 194 213 18 chr15 34312952 34313281 -67067240 + L1MD2 LINE L1 1967 2359 -4037 1164 208 17 28 chr15 34313308 34313596 -67066925 + L1MD2 LINE L1 5627 5911 -517 872 261 92 0 chr15 34313585 34313846 -67066675 + L1ME LINE L1 5411 5695 -471 * 328 204 92 10 chr15 34313844 34313942 -67066579 + L1MA10 LINE L1 6225 6330 -4 * 524 253 76 34 chr15 34313984 34314312 -67066209 + L1MEc LINE L1 3039 3380 -2835 2706 206 89 59 chr15 34314321 34314865 -67065656 - MER63D DNA MER1_type -2 1059 533 180 0 0 0 chr15 34314865 34314885 -67065636 + (TC)n Simple_repeat Simple_repeat 2 21 0 2706 206 89 59 chr15 34314885 34315172 -67065349 - MER63D DNA MER1_type -528 533 189 2334 83 0 34 chr15 34315172 34315496 -67065025 + AluSq SINE Alu 1 313 0 2706 206 89 59 chr15 34315496 34315683 -67064838 - MER63D DNA MER1_type -872 189 9 266 290 51 14 chr15 34315737 34315875 -67064646 + L1MEc LINE L1 3439 3581 -2634 218 60 60 20 chr15 34315948 34315998 -67064523 + (TA)n Simple_repeat Simple_repeat 1 52 0 942 274 102 10 chr15 34316011 34316501 -67064020 + L1MEc LINE L1 3968 4502 -1713 330 269 15 90 chr15 34316585 34316759 -67063762 - MLT1H LTR MaLR -344 205 3 887 272 30 59 chr15 34316788 34317229 -67063292 - L1MCc LINE L1 -5978 445 18 213 39 0 0 chr15 34318730 34318756 -67061765 + (TG)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr15 34319234 34319255 -67061266 + AT_rich Low_complexity Low_complexity 1 21 0 226 204 41 0 chr15 34320332 34320381 -67060140 - L2 LINE L2 0 3313 3263 264 336 9 19 chr15 34320627 34320734 -67059787 - L2 LINE L2 -1 3312 3207 2219 255 75 20 chr15 34320783 34322217 -67058304 - L1ME2 LINE L1 -10 6223 4684 2561 244 41 35 chr15 34322239 34322456 -67058065 - L1ME2 LINE L1 -1695 4520 4306 189 0 0 0 chr15 34322456 34322477 -67058044 + (TG)n Simple_repeat Simple_repeat 2 22 0 2561 244 41 35 chr15 34322477 34322675 -67057846 - L1ME2 LINE L1 -1909 4306 4111 1523 146 34 19 chr15 34322675 34322843 -67057678 - L1MC2 LINE L1 -1 6343 6166 1977 185 3 8 chr15 34322843 34323210 -67057311 - MLT1A1 LTR MaLR 0 365 1 1523 146 34 19 chr15 34323210 34323362 -67057159 - L1MC2 LINE L1 -178 6166 6018 2561 244 41 35 chr15 34323362 34323805 -67056716 - L1ME2 LINE L1 -2104 4111 3656 1471 122 0 0 chr15 34323957 34324162 -67056359 - AluSg/x SINE Alu -4 308 104 1811 64 13 0 chr15 34324164 34324400 -67056121 - THE1B-int LTR MaLR -1341 239 1 2155 118 51 25 chr15 34324400 34324755 -67055766 - THE1B LTR MaLR 0 364 1 314 270 65 51 chr15 34324781 34324996 -67055525 - HAL1 LINE L1 -861 1646 1429 385 272 91 64 chr15 34325000 34325518 -67055003 - L1ME2 LINE L1 -5083 1313 782 2669 171 24 40 chr15 34325552 34326102 -67054419 - L1PB4 LINE L1 -3 6153 5613 1890 163 79 11 chr15 34326102 34326806 -67053715 + L1PB4 LINE L1 4857 5612 -544 357 335 45 38 chr15 34327204 34327494 -67053027 - L1ME2 LINE L1 -6019 377 86 317 299 47 39 chr15 34327599 34327726 -67052795 - L1MC4a LINE L1 -1937 5871 5744 305 377 62 0 chr15 34327739 34327885 -67052636 - L1MC4a LINE L1 -2144 5664 5510 2407 119 19 24 chr15 34329060 34329288 -67051233 + THE1C LTR MaLR 1 228 -147 2383 115 19 22 chr15 34329288 34329653 -67050868 - THE1B LTR MaLR 0 364 1 2407 119 19 24 chr15 34329653 34329801 -67050720 + THE1C LTR MaLR 228 375 0 201 374 37 0 chr15 34330525 34330632 -67049889 + L2 LINE L2 3147 3257 -15 328 370 70 29 chr15 34330663 34331047 -67049474 - L2 LINE L2 -671 2643 2244 405 181 69 164 chr15 34331944 34332176 -67048345 + MER112 DNA MER1_type 3 212 -48 234 0 0 0 chr15 34332231 34332257 -67048264 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1808 145 0 10 chr15 34332267 34332577 -67047944 - AluYa5 SINE Alu 0 311 5 21 0 0 0 chr15 34332638 34332659 -67047862 + AT_rich Low_complexity Low_complexity 1 21 0 10285 238 35 19 chr15 34332949 34336906 -67043615 - L1PBb LINE L1 -1355 4848 781 349 276 0 8 chr15 34336920 34337043 -67043478 - L1PBb LINE L1 -3609 2594 2473 556 289 61 0 chr15 34337433 34337613 -67042908 - L1PBb LINE L1 -5324 880 690 * 3352 184 38 8 chr15 34337593 34338225 -67042296 - L1PA15-16 LINE L1 -5280 1569 919 475 258 18 18 chr15 34338220 34338383 -67042138 + L1MB7 LINE L1 5979 6141 -43 * 219 114 0 0 chr15 34338552 34338587 -67041934 + (TA)n Simple_repeat Simple_repeat 1 35 0 2331 92 0 13 chr15 34339297 34339603 -67040918 + AluY SINE Alu 1 302 -9 2105 123 7 3 chr15 34340018 34340326 -67040195 - AluSq SINE Alu -4 309 1 996 208 35 0 chr15 34340830 34341032 -67039489 + MER3 DNA MER1_type 1 209 0 192 152 0 0 chr15 34342569 34342602 -67037919 + (CATA)n Simple_repeat Simple_repeat 4 36 0 644 288 113 0 chr15 34346244 34346466 -67034055 + MIR SINE MIR 6 252 -10 231 227 0 30 chr15 34346991 34347057 -67033464 + L2 LINE L2 3165 3228 -85 23 54 0 0 chr15 34347079 34347116 -67033405 + AT_rich Low_complexity Low_complexity 1 37 0 441 318 85 0 chr15 34347191 34347380 -67033141 + MER63A DNA MER1_type 5 209 -1 570 188 16 70 chr15 34347517 34347645 -67032876 + MER68 LTR ERV1 1 121 -441 758 289 90 67 chr15 34349028 34349460 -67031061 - L2 LINE L2 -26 3287 2846 510 309 20 0 chr15 34350667 34350819 -67029702 - LTR67 LTR ERVL -9 548 394 306 345 23 40 chr15 34350983 34351157 -67029364 - LTR67 LTR ERVL -367 190 20 542 274 54 20 chr15 34351581 34351785 -67028736 - L1MC4 LINE L1 -480 7562 7352 4896 223 55 59 chr15 34351815 34353931 -67026590 + L1PA10 LINE L1 11 2163 -4298 * 4999 26 5 0 chr15 34353927 34354510 -67026011 - L1P LINE L1 -1852 4294 3709 3077 24 0 19 chr15 34354510 34354943 -67025578 + L1PA3 LINE L1 5789 6214 0 8369 144 32 8 chr15 34354959 34357648 -67022873 + L1PA10 LINE L1 2158 5013 -1470 2571 10 0 58 chr15 34357648 34357961 -67022560 - AluYa5 SINE Alu -16 295 1 8369 144 32 8 chr15 34357961 34359469 -67021052 + L1PA10 LINE L1 5013 6483 0 1605 238 57 63 chr15 34359478 34360290 -67020231 - L1MC4 LINE L1 -567 7321 6414 58 70 0 0 chr15 34360461 34360575 -67019946 + AT_rich Low_complexity Low_complexity 1 114 0 541 264 112 75 chr15 34360639 34361294 -67019227 - L1M4 LINE L1 -1726 4420 3742 22 35 0 0 chr15 34361373 34361402 -67019119 + AT_rich Low_complexity Low_complexity 1 29 0 515 311 50 53 chr15 34361948 34362269 -67018252 - L1MEd LINE L1 -4442 2098 1779 252 287 22 48 chr15 34362310 34362462 -67018059 - L1MEd LINE L1 -4866 1664 1390 4759 65 0 0 chr15 34363318 34363905 -67016616 + LTR14C LTR ERVK 1 587 0 482 289 57 44 chr15 34364128 34364356 -67016165 - MLT1J LTR MaLR -42 469 239 227 281 79 11 chr15 34364472 34364561 -67015960 - L1ME1 LINE L1 -93 6073 5979 1376 276 29 8 chr15 34364571 34365061 -67015460 + L1M4 LINE L1 3869 4368 -1778 4045 108 5 5 chr15 34365084 34365658 -67014863 + HERVK22 LTR ERVK 186 759 -6078 13029 98 5 14 chr15 34365940 34367500 -67013021 + HERVK22 LTR ERVK 2327 3870 -2967 2144 111 7 0 chr15 34367500 34367806 -67012715 - AluSg SINE Alu -2 308 1 13029 98 5 14 chr15 34367806 34368095 -67012426 + HERVK22 LTR ERVK 3870 4160 -2677 551 70 0 0 chr15 34368095 34368166 -67012355 + U3 snRNA snRNA 1 71 -146 2939 130 23 2 chr15 34368166 34368958 -67011563 + HERVK22 LTR ERVK 3172 6837 0 2050 184 87 17 chr15 34368958 34369430 -67011091 + LTR22 LTR ERVK 1 505 -4 1461 307 89 29 chr15 34369458 34370565 -67009956 - L1MEc LINE L1 -5131 1265 92 229 185 154 0 chr15 34370642 34370707 -67009814 - MLT1J LTR MaLR -345 166 92 198 265 249 28 chr15 34371506 34371687 -67008834 + L2 LINE L2 3035 3255 -58 232 246 0 18 chr15 34372528 34372585 -67007936 + GA-rich Low_complexity Low_complexity 1 56 0 413 272 154 0 chr15 34374097 34374259 -67006262 - MIR SINE MIR -12 250 64 328 140 0 0 chr15 34374892 34374942 -67005579 - MER94 DNA DNA -83 51 2 415 266 72 43 chr15 34375132 34375271 -67005250 + MER5B DNA MER1_type 11 142 -36 1294 153 40 22 chr15 34381489 34381712 -66998809 + Charlie3 DNA MER1_type 6 232 -2478 * 1735 102 35 12 chr15 34381707 34381962 -66998559 + Charlie3 DNA MER1_type 2442 2702 -8 235 310 111 63 chr15 34382622 34382802 -66997719 + MLT1K LTR MaLR 305 504 -84 1427 219 123 10 chr15 34382802 34383217 -66997304 - LTR40b LTR ERVL 0 462 1 235 310 111 63 chr15 34383217 34383307 -66997214 + MLT1K LTR MaLR 504 588 0 211 347 14 0 chr15 34384030 34384102 -66996419 + L2 LINE L2 3200 3272 0 1939 214 112 0 chr15 34384761 34385233 -66995288 + L1MC4 LINE L1 6479 7003 -1039 540 204 36 8 chr15 34385257 34385393 -66995128 + L1MC4 LINE L1 7880 7995 0 231 241 98 30 chr15 34385407 34385540 -66994981 + L1MC5 LINE L1 7800 7941 -20 228 163 0 0 chr15 34386221 34386264 -66994257 + (TG)n Simple_repeat Simple_repeat 2 44 0 338 235 12 12 chr15 34387170 34387251 -66993270 - MIR SINE MIR -1 261 181 22 0 0 0 chr15 34388511 34388533 -66991988 + AT_rich Low_complexity Low_complexity 1 22 0 9379 29 3 0 chr15 34388533 34390426 -66990095 - L1PA3 LINE L1 0 6155 4265 618 198 40 16 chr15 34391570 34391696 -66988825 + FLAM_A SINE Alu 4 132 -1 331 227 100 53 chr15 34393588 34393738 -66986783 + MIR SINE MIR 100 256 -6 350 241 13 0 chr15 34393786 34393865 -66986656 + Tigger5 DNA MER2_type 1 80 -2243 281 186 51 17 chr15 34393866 34393925 -66986596 - Tigger5 DNA MER2_type -6 2317 2257 * 318 152 0 0 chr15 34393924 34393970 -66986551 + Tigger5 DNA MER2_type 2278 2323 0 2228 121 0 0 chr15 34395752 34396059 -66984462 + AluSp SINE Alu 1 307 -6 465 322 17 34 chr15 34396127 34396304 -66984217 + MER5B DNA MER1_type 2 175 -3 660 191 22 0 chr15 34397399 34397535 -66982986 - MER33 DNA MER1_type -185 139 1 348 335 124 15 chr15 34397669 34398072 -66982449 + L1M4 LINE L1 4309 4755 -1391 5856 148 12 4 chr15 34398096 34399046 -66981475 + L1PB1 LINE L1 4824 5767 -384 318 50 0 0 chr15 34399046 34399086 -66981435 + (TA)n Simple_repeat Simple_repeat 1 40 0 5856 148 12 4 chr15 34399086 34399474 -66981047 + L1PB1 LINE L1 5767 6151 0 1791 175 0 4 chr15 34399879 34400159 -66980362 + AluJb SINE Alu 5 283 -29 203 61 30 0 chr15 34400164 34400197 -66980324 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr15 34400725 34400746 -66979775 + AT_rich Low_complexity Low_complexity 1 21 0 926 19 0 0 chr15 34400814 34400921 -66979600 + L1PA3 LINE L1 6047 6153 -2 395 335 71 48 chr15 34401240 34401634 -66978887 + LTR16C LTR ERVL 87 489 -2 5362 244 82 26 chr15 34401634 34404695 -66975826 + L1M3e LINE L1 831 4027 -2355 209 254 55 0 chr15 34404697 34404752 -66975769 + MER5B DNA MER1_type 121 178 0 340 363 15 15 chr15 34406234 34406369 -66974152 + MIR SINE MIR 16 150 -58 600 297 59 7 chr15 34406499 34406719 -66973802 + MIR SINE MIR 15 236 -26 182 284 104 0 chr15 34407993 34408060 -66972461 + MIR SINE MIR 186 259 -3 360 253 102 11 chr15 34408406 34408592 -66971929 - L1ME2 LINE L1 -297 5867 5665 258 271 24 100 chr15 34408642 34408852 -66971669 + MER112 DNA MER1_type 67 260 0 1853 230 70 26 chr15 34408957 34409413 -66971108 - MER110 LTR ERV1 -15 476 1 372 257 126 46 chr15 34409421 34409682 -66970839 - L1ME2 LINE L1 -577 5585 5304 318 245 202 29 chr15 34409700 34409908 -66970613 - L1ME2 LINE L1 -820 5326 5083 6325 92 14 0 chr15 34409983 34410958 -66969563 + L1PB2 LINE L1 5163 6149 -2 515 249 35 29 chr15 34411276 34411449 -66969072 - MLT1H LTR MaLR -375 174 1 243 0 0 0 chr15 34411749 34411776 -66968745 + (T)n Simple_repeat Simple_repeat 1 27 0 2524 192 70 52 chr15 34412834 34413494 -66967027 + MER21B LTR ERV1 132 803 -60 497 292 57 68 chr15 34413521 34413857 -66966664 + MLT1J2 LTR MaLR 36 367 -83 2080 198 115 9 chr15 34414584 34415044 -66965477 + LTR22 LTR ERVK 1 509 0 460 306 28 52 chr15 34415071 34415594 -66964927 - L1MEd LINE L1 -870 1620 1011 184 291 0 0 chr15 34417396 34417451 -66963070 + L2 LINE L2 2592 2646 -668 25 65 0 0 chr15 34417469 34417515 -66963006 + AT_rich Low_complexity Low_complexity 1 46 0 980 209 5 14 chr15 34417854 34418065 -66962456 + MER3 DNA MER1_type 1 209 0 248 432 54 7 chr15 34418330 34418478 -66962043 + L2 LINE L2 3116 3270 -2 198 71 0 0 chr15 34419079 34419107 -66961414 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 222 91 0 0 chr15 34419169 34419202 -66961319 + (CATA)n Simple_repeat Simple_repeat 4 36 0 25 31 0 0 chr15 34419711 34419743 -66960778 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr15 34420200 34420223 -66960298 + AT_rich Low_complexity Low_complexity 1 23 0 1075 244 78 55 chr15 34422320 34422771 -66957750 + MLT1C LTR MaLR 7 467 0 388 327 129 56 chr15 34422788 34423868 -66956653 + L2 LINE L2 2006 3183 -89 2007 130 20 0 chr15 34425356 34425657 -66954864 + AluSc SINE Alu 1 307 -2 2254 99 0 0 chr15 34427569 34427852 -66952669 + AluSg SINE Alu 1 283 -27 545 64 13 0 chr15 34427852 34427930 -66952591 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 252 279 48 67 chr15 34429082 34429186 -66951335 + L3 LINE CR1 1349 1450 -127 1029 163 117 0 chr15 34429690 34429886 -66950635 - MER20 DNA MER1_type 0 219 1 698 209 46 67 chr15 34430201 34430439 -66950082 - MLT2C1 LTR ERVL -115 282 49 1813 179 31 17 chr15 34430439 34430797 -66949724 - MLT1A1 LTR MaLR 0 365 3 698 209 46 67 chr15 34430797 34430841 -66949680 - MLT2C1 LTR ERVL -348 49 6 307 150 8 5 chr15 34430912 34430974 -66949547 + MLT1A2 LTR MaLR 266 313 -61 3865 186 30 8 chr15 34431078 34431905 -66948616 + L1MB7 LINE L1 5330 6174 -10 2260 108 0 0 chr15 34432735 34433031 -66947490 - AluSg SINE Alu -14 296 1 522 0 0 0 chr15 34433783 34433841 -66946680 + (TA)n Simple_repeat Simple_repeat 2 59 0 2120 109 4 0 chr15 34433863 34434138 -66946383 - AluSq SINE Alu -37 276 1 247 161 16 16 chr15 34434283 34434345 -66946176 + CT-rich Low_complexity Low_complexity 1 62 0 187 354 127 0 chr15 34435766 34435845 -66944676 - L2 LINE L2 -2 3270 3182 280 98 0 0 chr15 34436647 34436688 -66943833 - L1P LINE L1 -1224 4922 4882 1764 212 36 0 chr15 34437054 34437169 -66943352 + L1P LINE L1 4664 4773 -1373 203 61 30 0 chr15 34437169 34437202 -66943319 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 1764 212 36 0 chr15 34437202 34437501 -66943020 + L1P LINE L1 4773 5093 -1053 300 261 11 33 chr15 34439104 34439196 -66941325 + L1MC4 LINE L1 6614 6703 -1339 311 255 82 10 chr15 34439215 34439313 -66941208 + L1MC4 LINE L1 6615 6719 -1323 315 243 35 0 chr15 34439336 34439509 -66941012 + (TA)n Simple_repeat Simple_repeat 2 180 0 303 344 137 4 chr15 34439514 34439770 -66940751 + L2 LINE L2 2467 2756 -558 200 307 59 50 chr15 34439777 34439878 -66940643 - MER5B DNA MER1_type -76 102 1 445 204 71 66 chr15 34440377 34440603 -66939918 - L1MC5 LINE L1 -37 7924 7698 716 238 174 14 chr15 34440631 34440921 -66939600 - MLT1D LTR MaLR -2 503 167 1619 138 164 52 chr15 34440921 34441156 -66939365 + MSTA LTR MaLR 1 208 -220 2302 132 22 11 chr15 34441156 34441527 -66938994 + THE1C LTR MaLR 1 375 0 1619 138 164 52 chr15 34441527 34441676 -66938845 + MSTA LTR MaLR 208 428 0 626 203 98 49 chr15 34441676 34441839 -66938682 - MLT1D LTR MaLR -334 171 1 295 157 0 0 chr15 34441850 34441901 -66938620 - L1MC5 LINE L1 -302 7659 7609 320 304 49 0 chr15 34442708 34442810 -66937711 + MIR SINE MIR 37 143 -65 729 101 0 0 chr15 34442818 34442917 -66937604 + AluS SINE Alu 1 99 -214 339 25 0 0 chr15 34445380 34445420 -66935101 + (TG)n Simple_repeat Simple_repeat 1 40 0 331 283 69 48 chr15 34445559 34445704 -66934817 - MER5A DNA MER1_type -24 165 18 22 0 0 0 chr15 34446891 34446913 -66933608 + AT_rich Low_complexity Low_complexity 1 22 0 2154 201 33 10 chr15 34447381 34447868 -66932653 - MER34 LTR ERV1 0 542 45 249 241 0 0 chr15 34447886 34447944 -66932577 - MER34C LTR ERV1 -493 92 35 2015 153 0 0 chr15 34449065 34449360 -66931161 + AluSx SINE Alu 1 295 -17 8027 181 40 40 chr15 34449639 34451394 -66929127 - MER52A LTR ERV1 0 1755 1 542 266 108 18 chr15 34451575 34451797 -66928724 - MIR SINE MIR -17 245 4 260 258 112 11 chr15 34452754 34452843 -66927678 - MER5B DNA MER1_type -80 98 1 208 148 37 19 chr15 34452919 34452973 -66927548 + (TA)n Simple_repeat Simple_repeat 2 56 0 196 290 130 20 chr15 34454483 34454583 -66925938 + MIR3 SINE MIR 59 169 -39 519 297 32 0 chr15 34455104 34455259 -66925262 + MIR SINE MIR 77 236 -26 379 115 0 0 chr15 34455664 34455725 -66924796 + Alu SINE Alu 238 298 -4 5612 121 28 3 chr15 34455863 34457105 -66923416 - L1PA14 LINE L1 -2 6159 4888 257 237 31 62 chr15 34458972 34459069 -66921452 + L3 LINE CR1 1138 1231 -346 312 91 0 0 chr15 34459080 34459124 -66921397 + (TG)n Simple_repeat Simple_repeat 1 44 0 511 335 43 35 chr15 34459185 34459415 -66921106 + L3 LINE CR1 1244 1475 -102 200 321 113 54 chr15 34460463 34460684 -66919837 + L3 LINE CR1 1251 1484 -93 615 342 98 56 chr15 34461751 34462230 -66918291 + L3 LINE CR1 1071 1569 -8 1350 173 60 49 chr15 34462443 34462481 -66918040 - THE1C LTR MaLR -2 373 337 1992 142 0 10 chr15 34462481 34462777 -66917744 + AluSg SINE Alu 1 293 -17 1350 173 60 49 chr15 34462777 34463103 -66917418 - THE1C LTR MaLR -38 337 5 1784 152 55 36 chr15 34463284 34463647 -66916874 + THE1C LTR MaLR 6 375 0 1743 309 124 20 chr15 34463650 34464618 -66915903 - L2 LINE L2 -258 3055 1990 6115 213 12 13 chr15 34464701 34466001 -66914520 + L1PA15-16 LINE L1 1 1257 -5592 12914 189 20 11 chr15 34466001 34472087 -66908434 + L1PA16 LINE L1 733 6867 -2 216 294 92 18 chr15 34473245 34473354 -66907167 + MIR SINE MIR 20 136 -72 251 314 49 29 chr15 34473803 34473905 -66906616 - L2 LINE L2 -1 3312 3209 2458 61 6 16 chr15 34474044 34474356 -66906165 + AluY SINE Alu 1 309 -2 499 231 308 0 chr15 34474393 34474549 -66905972 - MIR SINE MIR 0 262 59 1648 49 0 0 chr15 34476590 34476793 -66903728 - L1PA4 LINE L1 -3 6152 5950 31 26 0 0 chr15 34477277 34477315 -66903206 + AT_rich Low_complexity Low_complexity 1 38 0 458 265 240 39 chr15 34477371 34477463 -66903058 - MIR SINE MIR -1 261 189 387 0 0 0 chr15 34477463 34477506 -66903015 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2290 71 4 0 chr15 34477507 34477787 -66902734 - AluSq SINE Alu -32 281 1 458 265 240 39 chr15 34477787 34477896 -66902625 - MIR SINE MIR -72 190 17 368 232 56 24 chr15 34479716 34479841 -66900680 + L2 LINE L2 2375 2503 -811 349 318 9 9 chr15 34479997 34480107 -66900414 + MERVL LTR ERVL 4101 4210 -1275 1436 137 34 9 chr15 34480111 34480344 -66900177 - AluSg/x SINE Alu 0 312 74 610 329 80 46 chr15 34480348 34481189 -66899332 + MERVL LTR ERVL 4246 5114 -650 454 265 56 55 chr15 34481514 34481889 -66898632 + LTR16A LTR ERVL 10 441 -9 950 281 153 26 chr15 34481897 34482471 -66898050 + L2 LINE L2 2673 3313 0 214 191 0 0 chr15 34482792 34482834 -66897687 + T-rich Low_complexity Low_complexity 1 42 0 186 265 29 29 chr15 34483052 34483120 -66897401 - MIR SINE MIR -87 121 54 548 296 28 32 chr15 34483555 34483771 -66896750 - MIR SINE MIR -1 261 47 216 149 0 0 chr15 34483850 34483897 -66896624 + (TC)n Simple_repeat Simple_repeat 1 47 0 369 312 88 0 chr15 34484462 34484607 -66895914 - MIR SINE MIR -70 192 37 180 328 147 0 chr15 34485852 34485968 -66894553 - L2 LINE L2 -1 3312 3180 2290 95 7 0 chr15 34486588 34486893 -66893628 - AluSp SINE Alu -6 307 1 585 221 0 15 chr15 34486959 34487095 -66893426 + MLT2F LTR ERVL 1 134 -529 484 175 58 46 chr15 34487103 34487287 -66893234 + MLT1E1 LTR MaLR 52 291 -363 247 175 0 88 chr15 34487401 34487458 -66893063 + MLT2C2 LTR ERVL 343 394 -70 219 244 33 11 chr15 34487478 34487568 -66892953 + (TA)n Simple_repeat Simple_repeat 2 93 0 664 317 35 0 chr15 34488078 34488305 -66892216 - MIR SINE MIR 0 262 28 1739 176 3 17 chr15 34489317 34489607 -66890914 - AluJo SINE Alu -26 286 1 810 213 21 50 chr15 34489847 34490087 -66890434 + L1MD2 LINE L1 6044 6276 -83 186 71 0 0 chr15 34490397 34490425 -66890096 + (A)n Simple_repeat Simple_repeat 1 28 0 209 278 0 0 chr15 34491625 34491679 -66888842 + (CATA)n Simple_repeat Simple_repeat 2 55 0 349 52 0 35 chr15 34491913 34491971 -66888550 + (CA)n Simple_repeat Simple_repeat 1 56 0 217 303 110 18 chr15 34492354 34492463 -66888058 - MIR SINE MIR -17 245 127 1545 186 20 17 chr15 34493121 34493417 -66887104 + AluJo SINE Alu 1 297 -15 1120 142 44 18 chr15 34493439 34493805 -66886716 + MSTA LTR MaLR 1 422 -6 225 305 42 34 chr15 34494095 34494213 -66886308 + MLT1J2 LTR MaLR 281 399 -51 1276 162 101 10 chr15 34494775 34495071 -66885450 - MER33 DNA MER1_type -1 323 1 239 246 0 15 chr15 34495405 34495470 -66885051 + (TG)n Simple_repeat Simple_repeat 1 64 0 246 310 149 40 chr15 34495530 34495704 -66884817 + MIR SINE MIR 38 230 -32 211 374 38 15 chr15 34495714 34495845 -66884676 - L2 LINE L2 -498 2816 2683 213 39 0 0 chr15 34497149 34497175 -66883346 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr15 34497704 34497727 -66882794 + AT_rich Low_complexity Low_complexity 1 23 0 3809 155 41 0 chr15 34499750 34500458 -66880063 + L1MA9 LINE L1 5571 6307 -5 423 339 17 17 chr15 34502310 34502487 -66878034 - MIR SINE MIR -73 189 13 1910 192 120 5 chr15 34502504 34502947 -66877574 - MLT1D LTR MaLR 0 505 12 783 286 64 31 chr15 34503487 34503878 -66876643 + MLT1I LTR MaLR 3 406 -3 1751 189 3 10 chr15 34504337 34504638 -66875883 - AluJb SINE Alu -13 299 1 2231 103 0 10 chr15 34506007 34506308 -66874213 + AluSc SINE Alu 1 298 -11 2476 51 0 29 chr15 34509787 34510101 -66870420 + AluY SINE Alu 1 305 -6 324 252 150 20 chr15 34511152 34511639 -66868882 + L1ME4a LINE L1 5494 6096 -25 269 153 0 17 chr15 34511796 34511855 -66868666 + (TA)n Simple_repeat Simple_repeat 1 58 0 2648 135 23 61 chr15 34511963 34512490 -66868031 - L1MC1 LINE L1 0 6333 5827 1914 224 42 22 chr15 34512490 34513414 -66867107 - L1M4 LINE L1 -3435 2535 1590 3255 229 27 33 chr15 34513443 34514493 -66866028 - L1M4 LINE L1 -4535 1437 395 1229 226 52 15 chr15 34514495 34514823 -66865698 - MLT1A1 LTR MaLR -12 353 14 304 297 9 18 chr15 34514864 34514975 -66865546 - L1M3c LINE L1 -5117 1024 915 409 345 41 41 chr15 34515068 34515433 -66865088 - L1M4 LINE L1 -5526 365 1 2347 192 19 0 chr15 34515439 34515913 -66864608 - L1MC/D LINE L1 -513 5820 5338 230 213 0 21 chr15 34519543 34519590 -66860931 - L2 LINE L2 -73 3240 3195 198 286 204 10 chr15 34519928 34520026 -66860495 + MIR SINE MIR 19 135 -73 472 260 0 57 chr15 34520071 34520194 -66860327 - L2 LINE L2 -1 3312 3197 470 207 0 99 chr15 34521279 34521400 -66859121 + L2 LINE L2 3201 3309 -4 512 228 325 5 chr15 34521421 34521618 -66858903 - MIR SINE MIR -1 261 2 47 33 0 0 chr15 34521669 34521730 -66858791 + AT_rich Low_complexity Low_complexity 1 61 0 926 266 13 26 chr15 34521848 34522081 -66858440 + MIR SINE MIR 33 262 0 191 35 0 35 chr15 34522764 34522793 -66857728 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 235 150 0 0 chr15 34524198 34524238 -66856283 - LTR67 LTR ERVL 0 557 518 371 323 172 16 chr15 34524247 34524439 -66856082 + MIR SINE MIR 21 242 -20 363 154 0 0 chr15 34524446 34524511 -66856010 + (CAT)n Simple_repeat Simple_repeat 1 65 0 806 341 108 10 chr15 34525045 34525687 -66854834 + L2 LINE L2 2355 3054 -218 4060 210 131 10 chr15 34526611 34527907 -66852614 - Charlie1 DNA MER1_type -6 2755 1 22 0 0 0 chr15 34528061 34528083 -66852438 + AT_rich Low_complexity Low_complexity 1 22 0 210 207 256 12 chr15 34529905 34529987 -66850534 - MIR3 SINE MIR -4 204 103 246 268 89 94 chr15 34532651 34532886 -66847635 + L2 LINE L2 3025 3258 -55 234 325 111 8 chr15 34533774 34533900 -66846621 + MIR SINE MIR 68 206 -56 309 290 53 0 chr15 34534233 34534364 -66846157 - L1MC4a LINE L1 -1879 5929 5792 342 355 36 24 chr15 34534931 34535097 -66845424 - MIR SINE MIR -72 190 23 490 278 101 35 chr15 34537599 34537937 -66842584 + LTR33 LTR ERVL 3 362 -159 754 206 0 0 chr15 34538143 34538274 -66842247 - FLAM_C SINE Alu -2 131 1 26 30 0 0 chr15 34538349 34538382 -66842139 + AT_rich Low_complexity Low_complexity 1 33 0 537 293 63 0 chr15 34538497 34538671 -66841850 - MIR SINE MIR -26 236 52 289 182 0 0 chr15 34540363 34540407 -66840114 - L2 LINE L2 -19 3294 3251 276 288 89 48 chr15 34540452 34540598 -66839923 + MIR SINE MIR 60 211 -51 2063 223 72 2 chr15 34540598 34541180 -66839341 - L1ME3A LINE L1 0 6170 5548 435 249 48 79 chr15 34541628 34541793 -66838728 - MIR3 SINE MIR -14 194 35 188 229 21 0 chr15 34542293 34542341 -66838180 + L2 LINE L2 3265 3313 0 238 161 0 89 chr15 34542482 34542538 -66837983 - MER5B DNA MER1_type -127 51 1 24 0 0 0 chr15 34542575 34542599 -66837922 + AT_rich Low_complexity Low_complexity 1 24 0 778 239 40 21 chr15 34543439 34543670 -66836851 + MIR SINE MIR 19 261 -1 818 264 14 9 chr15 34546269 34546485 -66834036 + MER20 DNA MER1_type 2 218 -1 2556 60 0 13 chr15 34547945 34548260 -66832261 + AluY SINE Alu 1 311 0 316 275 0 12 chr15 34550456 34550536 -66829985 - MIR SINE MIR -169 93 15 2071 165 135 5 chr15 34550543 34550986 -66829535 - MLT1D LTR MaLR -2 503 3 580 211 12 12 chr15 34552239 34552400 -66828121 - Charlie4a DNA MER1_type -8 500 340 759 264 77 0 chr15 34552570 34552843 -66827678 - Charlie4a DNA MER1_type -178 330 37 683 137 51 0 chr15 34553190 34553386 -66827135 + L1PA16 LINE L1 5926 6166 0 270 301 136 0 chr15 34553442 34553545 -66826976 + L2 LINE L2 3195 3311 -2 627 209 27 120 chr15 34554171 34554430 -66826091 - MER112 DNA MER1_type -7 253 19 181 355 84 9 chr15 34555179 34555286 -66825235 + L3b LINE CR1 1336 1450 -133 23 68 0 0 chr15 34555448 34555492 -66825029 + AT_rich Low_complexity Low_complexity 1 44 0 183 189 0 0 chr15 34557115 34557152 -66823369 + L2 LINE L2 3277 3313 0 1679 189 76 70 chr15 34557624 34558136 -66822385 + MLT2B1 LTR ERVL 1 515 -5 2064 212 37 6 chr15 34558138 34558628 -66821893 + MLT-int LTR MaLR 1 505 -1230 297 235 25 0 chr15 34558645 34558726 -66821795 + MLT-int LTR MaLR 676 758 -977 201 393 89 0 chr15 34559052 34559164 -66821357 - L2 LINE L2 0 3272 3151 371 352 56 20 chr15 34559482 34559678 -66820843 + MIR SINE MIR 12 214 -48 892 131 12 48 chr15 34560060 34560228 -66820293 + MLT2B1 LTR ERVL 106 267 -253 385 253 0 12 chr15 34560366 34560536 -66819985 + (TA)n Simple_repeat Simple_repeat 2 169 0 207 0 0 0 chr15 34560560 34560583 -66819938 + (TG)n Simple_repeat Simple_repeat 2 24 0 318 281 0 21 chr15 34560583 34560679 -66819842 + L1MC4 LINE L1 6614 6707 -1335 385 314 33 16 chr15 34560731 34560852 -66819669 + L2 LINE L2 3136 3258 -14 378 61 0 0 chr15 34561206 34561255 -66819266 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 210 43 22 43 chr15 34562980 34563026 -66817495 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 182 333 13 13 chr15 34563253 34563331 -66817190 + L2 LINE L2 3223 3300 -13 2183 123 0 3 chr15 34563601 34563903 -66816618 + AluJb SINE Alu 3 303 -9 387 255 80 22 chr15 34565167 34565333 -66815188 + MIR SINE MIR 7 180 -62 284 249 41 66 chr15 34565883 34566074 -66814447 + LTR41 LTR ERVL 578 768 -5 180 97 0 0 chr15 34566583 34566614 -66813907 + (T)n Simple_repeat Simple_repeat 1 31 0 2325 87 3 0 chr15 34566696 34566983 -66813538 - AluSp SINE Alu -25 288 1 253 310 69 44 chr15 34567072 34567248 -66813273 - MIR3 SINE MIR -63 145 8 412 339 77 15 chr15 34567301 34567496 -66813025 - MIR SINE MIR -15 247 41 7167 152 6 8 chr15 34567874 34570506 -66810015 + L1MA2 LINE L1 3675 6301 -3 3261 249 73 37 chr15 34570568 34571998 -66808523 + L1MEc LINE L1 1808 3269 -2946 22013 29 0 0 chr15 34571998 34575439 -66805082 + L1PA3 LINE L1 2702 6150 -5 3261 249 73 37 chr15 34575439 34575763 -66804758 + L1MEc LINE L1 3269 3580 -2635 903 298 113 45 chr15 34575883 34575949 -66804572 + LTR33 LTR ERVL 1 61 -460 1989 110 0 0 chr15 34575949 34576212 -66804309 + AluSg SINE Alu 32 294 -16 903 298 113 45 chr15 34576212 34576631 -66803890 + LTR33 LTR ERVL 61 519 -2 1314 185 0 9 chr15 34576935 34577157 -66803364 + AluJo SINE Alu 84 303 -9 509 117 84 206 chr15 34577271 34577484 -66803037 - MER21B LTR ERV1 -6 925 665 2413 107 13 24 chr15 34577484 34577857 -66802664 + THE1C LTR MaLR 1 369 -6 2785 197 89 21 chr15 34577891 34578496 -66802025 - MER21B LTR ERV1 -199 664 19 454 228 0 22 chr15 34578518 34578610 -66801911 - MER21B LTR ERV1 -773 90 1 33 0 0 42 chr15 34578913 34578939 -66801582 + AT_rich Low_complexity Low_complexity 1 26 -20 2961 3 0 0 chr15 34578939 34579257 -66801264 + AluYb8 SINE Alu 1 318 0 33 0 0 42 chr15 34579257 34579278 -66801243 + AT_rich Low_complexity Low_complexity 26 46 0 33 0 0 0 chr15 34579830 34579863 -66800658 + AT_rich Low_complexity Low_complexity 1 33 0 861 249 41 0 chr15 34580071 34580268 -66800253 + MLT1A1 LTR MaLR 161 365 0 289 248 134 97 chr15 34580336 34580660 -66799861 + L1ME LINE L1 5494 5823 -298 291 303 0 0 chr15 34581008 34581074 -66799447 + L2 LINE L2 3205 3270 -2 1451 223 0 11 chr15 34582292 34582574 -66797947 - AluJo SINE Alu -30 282 4 637 112 31 0 chr15 34583934 34584032 -66796489 + MER67A LTR ERV1 1 101 -442 387 0 0 0 chr15 34584082 34584125 -66796396 + (CA)n Simple_repeat Simple_repeat 1 43 0 1209 199 31 68 chr15 34584134 34584460 -66796061 + MER67A LTR ERV1 99 412 -131 4149 55 4 0 chr15 34584465 34584990 -66795531 + L1PA7 LINE L1 5627 6153 -1 1040 95 65 6 chr15 34584990 34585158 -66795363 + L1MA3 LINE L1 6128 6305 0 780 188 7 0 chr15 34585183 34585321 -66795200 + MER67A LTR ERV1 405 543 0 1983 154 133 18 chr15 34586454 34586838 -66793683 + MSTA LTR MaLR 1 428 0 206 295 84 21 chr15 34587557 34587652 -66792869 + MIR SINE MIR 26 126 -136 238 271 186 8 chr15 34587714 34587843 -66792678 + MIR SINE MIR 110 261 -1 1229 121 6 9 chr15 34587903 34588210 -66792311 + THE1C LTR MaLR 1 374 -1 208 150 25 0 chr15 34588695 34588735 -66791786 + GA-rich Low_complexity Low_complexity 2 42 0 231 206 33 11 chr15 34589090 34589182 -66791339 + (TAA)n Simple_repeat Simple_repeat 1 94 0 22 0 0 0 chr15 34591128 34591150 -66789371 + AT_rich Low_complexity Low_complexity 1 22 0 1929 168 19 3 chr15 34592086 34592462 -66788059 - L1MB3 LINE L1 -2 6181 5800 551 292 17 11 chr15 34592491 34592669 -66787852 + MIR SINE MIR 65 243 -19 207 250 0 0 chr15 34592683 34592727 -66787794 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1904 65 4 0 chr15 34592777 34593025 -66787496 - L1PA4 LINE L1 -3 6152 5904 827 31 0 0 chr15 34593025 34593121 -66787400 + L1PA4 LINE L1 5801 5896 -259 1899 179 11 22 chr15 34594013 34594382 -66786139 - MLT1A1 LTR MaLR 0 365 1 203 318 0 30 chr15 34594912 34594978 -66785543 - MIR SINE MIR -68 140 77 189 227 15 76 chr15 34596671 34596737 -66783784 + L2 LINE L2 3028 3089 -183 665 213 137 13 chr15 34597023 34597385 -66783136 - MLT1E3 LTR MaLR 0 624 138 362 302 43 43 chr15 34598143 34598259 -66782262 + L2 LINE L2 3157 3272 0 398 264 103 50 chr15 34598359 34598620 -66781901 + L1ME4a LINE L1 5807 6081 -40 356 341 76 8 chr15 34600255 34600387 -66780134 - MIR SINE MIR -85 177 37 202 237 68 0 chr15 34600558 34600617 -66779904 + CT-rich Low_complexity Low_complexity 4 66 0 268 333 15 30 chr15 34600737 34600869 -66779652 + L2 LINE L2 2851 2980 -292 1721 191 58 43 chr15 34600876 34601362 -66779159 - Charlie1b DNA MER1_type 0 523 31 239 322 144 0 chr15 34601545 34601635 -66778886 + L2 LINE L2 3165 3267 -5 490 222 37 9 chr15 34601894 34602002 -66778519 - L2 LINE L2 -6 3307 3197 347 324 101 14 chr15 34602054 34602193 -66778328 + MIR SINE MIR 100 250 -12 247 293 61 50 chr15 34604365 34604464 -66776057 - L2 LINE L2 -19 3294 3195 275 280 229 11 chr15 34604760 34604935 -66775586 - L3 LINE CR1 -909 668 456 1786 179 8 14 chr15 34605205 34605557 -66774964 - L1MA7 LINE L1 -310 5981 5632 1240 178 43 26 chr15 34605557 34605858 -66774663 + L1MA7 LINE L1 5984 6291 0 1143 177 47 115 chr15 34606253 34606654 -66773867 + MLT1A2 LTR MaLR 1 374 0 918 154 37 0 chr15 34607274 34607436 -66773085 - L1PA10 LINE L1 -3 6165 5998 21 36 0 0 chr15 34607583 34607611 -66772910 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr15 34608199 34608231 -66772290 + AT_rich Low_complexity Low_complexity 1 32 0 14450 31 0 0 chr15 34608345 34610901 -66769620 + L1PA3 LINE L1 3652 6155 0 457 226 41 87 chr15 34611163 34611358 -66769163 + L2 LINE L2 3128 3313 0 225 132 0 0 chr15 34611628 34611666 -66768855 + (TG)n Simple_repeat Simple_repeat 2 39 0 808 234 68 10 chr15 34611830 34612022 -66768499 - MLT1B LTR MaLR 0 390 188 358 127 28 0 chr15 34612023 34612094 -66768427 + GA-rich Low_complexity Low_complexity 2 74 0 601 248 75 0 chr15 34612112 34612273 -66768248 - MLT1B LTR MaLR -217 173 1 10515 65 25 1 chr15 34612786 34614931 -66765590 + L1PA6 LINE L1 3973 6139 -15 265 224 0 82 chr15 34614950 34615048 -66765473 + L1MC4 LINE L1 6614 6703 -1339 212 292 79 0 chr15 34615588 34615677 -66764844 + L2 LINE L2 3169 3264 -49 875 253 82 69 chr15 34615905 34616284 -66764237 + MLT1J LTR MaLR 117 500 -11 602 244 0 0 chr15 34616389 34616512 -66764009 + MER5C DNA MER1_type 2 124 -200 4801 60 0 0 chr15 34618952 34619554 -66760967 + L1PA5 LINE L1 5553 6154 0 557 242 132 6 chr15 34619772 34619954 -66760567 + MER5C DNA MER1_type 118 322 -2 323 270 31 38 chr15 34620234 34620393 -66760128 - Charlie8 DNA MER1_type -2234 183 26 187 400 32 26 chr15 34621764 34621919 -66758602 + L2 LINE L2 3097 3252 -20 443 264 222 0 chr15 34622312 34622456 -66758065 + MER5A DNA MER1_type 13 188 -1 491 222 0 67 chr15 34625331 34625466 -66755055 - MER5B DNA MER1_type -52 126 1 1867 189 0 3 chr15 34625564 34625870 -66754651 + AluJb SINE Alu 1 305 -7 329 325 89 18 chr15 34627708 34627877 -66752644 + L1M4 LINE L1 716 896 -5646 683 280 4 33 chr15 34627934 34628209 -66752312 + L1M4 LINE L1 912 1178 -5368 307 331 55 21 chr15 34628222 34628367 -66752154 + L1M4 LINE L1 1439 1588 -5058 601 270 77 69 chr15 34628558 34628996 -66751525 + L1M4 LINE L1 2033 2466 -4359 2416 132 70 2 chr15 34628996 34629397 -66751124 + MSTA LTR MaLR 1 428 0 2181 156 5 16 chr15 34629406 34629784 -66750737 - THE1C LTR MaLR 0 375 2 561 88 0 0 chr15 34629784 34629864 -66750657 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 601 270 77 69 chr15 34629864 34629936 -66750585 + L1M4 LINE L1 2472 2558 -4267 1998 55 0 27 chr15 34629939 34630196 -66750325 + AluY SINE Alu 44 293 -18 827 166 108 25 chr15 34630212 34630456 -66750065 + L1ME2 LINE L1 5236 5500 -662 1338 172 54 54 chr15 34630457 34630789 -66749732 + L1ME2 LINE L1 5615 5946 -216 325 71 107 0 chr15 34630791 34630847 -66749674 + L1MA2 LINE L1 6239 6300 -4 326 226 43 70 chr15 34630892 34631007 -66749514 + L1ME2 LINE L1 5937 6048 -116 2241 118 3 3 chr15 34631655 34631961 -66748560 + AluSx SINE Alu 3 308 -4 5869 48 0 0 chr15 34632472 34633186 -66747335 - L1PA5 LINE L1 0 6154 5441 4626 59 0 0 chr15 34633186 34633815 -66746706 + L1P LINE L1 4720 5348 -798 545 279 186 23 chr15 34633834 34634221 -66746300 - LTR16A LTR ERVL 0 450 1 22 0 0 0 chr15 34635624 34635646 -66744875 + AT_rich Low_complexity Low_complexity 1 22 0 759 73 0 9 chr15 34639558 34639668 -66740853 + L1PB1 LINE L1 5682 5790 -361 369 188 0 0 chr15 34639671 34639751 -66740770 + (TA)n Simple_repeat Simple_repeat 1 80 0 2383 89 21 0 chr15 34639766 34640128 -66740393 + L1PB1 LINE L1 5783 6151 0 505 291 97 67 chr15 34640209 34640870 -66739651 + L1ME4a LINE L1 4525 5205 -941 305 313 206 28 chr15 34641121 34641520 -66739001 + L1ME4a LINE L1 5454 5923 -198 273 75 0 0 chr15 34641520 34641560 -66738961 + (CA)n Simple_repeat Simple_repeat 1 40 0 24 53 0 0 chr15 34641709 34641747 -66738774 + AT_rich Low_complexity Low_complexity 1 38 0 369 282 48 0 chr15 34642402 34642505 -66738016 + MIR SINE MIR 79 186 -76 9342 166 19 17 chr15 34642817 34644500 -66736021 - L1PA13 LINE L1 -14 6149 4438 1830 133 0 0 chr15 34644500 34644755 -66735766 - AluSx SINE Alu -17 295 41 9342 166 19 17 chr15 34644755 34645671 -66734850 - L1PA13 LINE L1 -1725 4438 3526 2318 96 0 3 chr15 34646391 34646694 -66733827 + AluSq SINE Alu 1 302 -11 1790 216 37 28 chr15 34646836 34647299 -66733222 - MLT1C LTR MaLR 0 467 1 524 341 59 0 chr15 34647299 34647469 -66733052 + MIR SINE MIR 77 256 -6 373 217 22 22 chr15 34651406 34651498 -66729023 + MER103 DNA DNA 32 123 -43 640 311 145 3 chr15 34654510 34654861 -66725660 - L2 LINE L2 -1 3312 2912 212 319 11 22 chr15 34654916 34655007 -66725514 - L2 LINE L2 -516 2798 2709 214 297 20 40 chr15 34655764 34655865 -66724656 - MIR SINE MIR -97 165 67 9648 151 37 4 chr15 34656933 34659614 -66720907 - L1MA8 LINE L1 -4 6287 3519 215 353 39 29 chr15 34660357 34660459 -66720062 + MIR SINE MIR 38 140 -122 763 260 39 26 chr15 34660546 34660777 -66719744 + L2 LINE L2 1906 2139 -1175 706 293 62 18 chr15 34661478 34661703 -66718818 - MIR SINE MIR -6 256 22 2153 113 3 10 chr15 34662088 34662390 -66718131 - AluSg SINE Alu -10 300 1 22 0 0 0 chr15 34663185 34663207 -66717314 + AT_rich Low_complexity Low_complexity 1 22 0 330 24 0 0 chr15 34663411 34663452 -66717069 - U2 snRNA snRNA -130 58 18 4955 52 27 2 chr15 34663452 34664082 -66716439 + L1PA7 LINE L1 5503 6148 -6 22 0 0 0 chr15 34664082 34664104 -66716417 + AT_rich Low_complexity Low_complexity 1 22 0 395 299 26 0 chr15 34664597 34664714 -66715807 + MER91A DNA MER1_type 35 154 -42 433 240 30 0 chr15 34665660 34665760 -66714761 + MER58 DNA MER1_type 4 106 -109 287 365 19 39 chr15 34666680 34666836 -66713685 + MER5A DNA MER1_type 1 153 -36 2003 159 0 0 chr15 34668594 34668890 -66711631 + AluSx SINE Alu 1 296 -16 216 213 43 0 chr15 34669006 34669053 -66711468 + C-rich Low_complexity Low_complexity 2 50 0 227 323 21 85 chr15 34670324 34670491 -66710030 - MIR3 SINE MIR -43 165 16 1766 191 20 0 chr15 34670822 34671126 -66709395 + AluJb SINE Alu 1 310 -2 1702 183 60 71 chr15 34671240 34671677 -66708844 + MSTB1 LTR MaLR 1 432 0 2509 45 0 38 chr15 34672576 34672890 -66707631 - AluY SINE Alu -9 302 1 46 19 0 0 chr15 34673736 34673789 -66706732 + AT_rich Low_complexity Low_complexity 1 53 0 60 37 0 0 chr15 34674319 34674400 -66706121 + AT_rich Low_complexity Low_complexity 1 81 0 24 53 0 0 chr15 34674493 34674531 -66705990 + AT_rich Low_complexity Low_complexity 1 38 0 590 304 35 22 chr15 34674827 34675057 -66705464 + MIR SINE MIR 30 262 0 2022 105 0 41 chr15 34676170 34676491 -66704030 - AluSq SINE Alu 0 309 1 24 0 0 0 chr15 34676754 34676778 -66703743 + AT_rich Low_complexity Low_complexity 1 24 0 308 328 70 8 chr15 34680211 34680339 -66700182 + MIR3 SINE MIR 2 137 -71 313 316 8 53 chr15 34680416 34680549 -66699972 - L2 LINE L2 0 3313 3187 710 146 56 49 chr15 34680574 34680718 -66699803 - MSTB1 LTR MaLR 0 432 288 905 206 0 0 chr15 34680718 34680883 -66699638 - AluJb SINE Alu -18 294 130 440 261 0 27 chr15 34681002 34681113 -66699408 - MLT1J1 LTR MaLR -336 110 3 523 355 30 4 chr15 34681568 34681802 -66698719 + MER102b DNA MER1_type 102 341 0 190 219 73 0 chr15 34681989 34682030 -66698491 + L2 LINE L2 3209 3252 -20 287 286 216 44 chr15 34683109 34683424 -66697097 - L2 LINE L2 0 3313 2945 672 163 0 0 chr15 34684781 34684934 -66695587 + (TG)n Simple_repeat Simple_repeat 2 154 0 2238 102 14 3 chr15 34685493 34685787 -66694734 - AluSq SINE Alu -16 297 1 2058 124 3 10 chr15 34686824 34687123 -66693398 - AluSx SINE Alu -15 297 1 182 240 147 13 chr15 34687373 34687448 -66693073 + MIR SINE MIR 45 129 -79 283 238 16 16 chr15 34688305 34688368 -66692153 + MER81 DNA DNA 40 102 -12 188 333 0 14 chr15 34690427 34690496 -66690025 - L2 LINE L2 -66 3206 3139 357 325 112 41 chr15 34690719 34691014 -66689507 - L2 LINE L2 -358 2956 2641 360 271 131 32 chr15 34691206 34691427 -66689094 - MIR SINE MIR -2 260 18 186 43 0 0 chr15 34691544 34691567 -66688954 + (CA)n Simple_repeat Simple_repeat 2 24 0 397 301 42 14 chr15 34691724 34691867 -66688654 - MIR SINE MIR -19 243 97 31 0 0 0 chr15 34691867 34691898 -66688623 + AT_rich Low_complexity Low_complexity 1 31 0 221 250 58 0 chr15 34692991 34693043 -66687478 - L2 LINE L2 -24 3289 3235 268 373 10 10 chr15 34693640 34693742 -66686779 + MER5A DNA MER1_type 85 186 -3 1523 282 113 16 chr15 34694080 34694892 -66685629 - L1M4 LINE L1 -1604 4542 3652 185 259 19 37 chr15 34695606 34695660 -66684861 + L2 LINE L2 3220 3272 0 647 264 83 46 chr15 34695698 34695914 -66684607 + MER58A DNA MER1_type 1 224 0 2106 128 3 0 chr15 34697242 34697540 -66682981 + AluSx SINE Alu 1 299 -13 1145 210 107 31 chr15 34698001 34698069 -66682452 - MER2 DNA MER2_type -1 343 282 1923 153 3 0 chr15 34698069 34698364 -66682157 + AluSq SINE Alu 1 296 -17 1145 210 107 31 chr15 34698364 34698614 -66681907 - MER2 DNA MER2_type -62 282 1 400 306 79 108 chr15 34698753 34699233 -66681288 + L1MC4a LINE L1 5507 5972 -1836 1697 194 56 28 chr15 34700738 34701093 -66679428 - MLT1A1 LTR MaLR 0 365 1 187 430 32 0 chr15 34701486 34701642 -66678879 + L2 LINE L2 3111 3271 -1 1714 179 14 14 chr15 34702720 34703017 -66677504 - AluSx SINE Alu -15 297 1 555 126 58 10 chr15 34703215 34703318 -66677203 + L1MB4 LINE L1 6071 6178 -2 464 304 34 125 chr15 34703433 34703881 -66676640 - L2 LINE L2 0 3272 2866 2132 108 3 3 chr15 34703956 34704243 -66676278 + AluSx SINE Alu 13 299 -13 228 360 23 0 chr15 34705331 34705417 -66675104 - MIR3 SINE MIR -26 182 95 277 260 0 27 chr15 34705894 34705967 -66674554 - HAL1 LINE L1 -363 2144 2074 282 330 55 45 chr15 34706404 34706507 -66674014 + MIR SINE MIR 21 126 -93 2456 158 64 10 chr15 34706507 34706913 -66673608 + MSTA LTR MaLR 1 428 0 282 330 55 45 chr15 34706913 34706943 -66673578 + MIR SINE MIR 126 154 -65 417 272 68 16 chr15 34708217 34708374 -66672147 + MIR SINE MIR 21 184 -67 411 283 102 48 chr15 34710127 34710355 -66670166 - L1MEd LINE L1 -4886 1233 1019 711 242 75 0 chr15 34710355 34710516 -66670005 + MER96 DNA MER1_type 1 173 -2 411 283 102 48 chr15 34710516 34710828 -66669693 - L1MEd LINE L1 -5100 1019 664 357 43 0 0 chr15 34711218 34711265 -66669256 + (TG)n Simple_repeat Simple_repeat 2 48 0 232 226 16 16 chr15 34711274 34711336 -66669185 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 3207 195 59 19 chr15 34711400 34712197 -66668324 + L1MC4 LINE L1 7005 7898 -144 948 180 57 21 chr15 34712199 34712393 -66668128 + MER106A DNA MER1_type 34 234 -2 186 103 0 0 chr15 34712673 34712702 -66667819 + (TG)n Simple_repeat Simple_repeat 2 30 0 2054 119 3 14 chr15 34712986 34713280 -66667241 + AluSg SINE Alu 1 291 -19 198 114 29 0 chr15 34713355 34713390 -66667131 - MIR SINE MIR -12 250 215 196 204 20 41 chr15 34713390 34713404 -66667117 - L2 LINE L2 -18 3254 3207 472 246 63 0 chr15 34715606 34715732 -66664789 - MER94 DNA DNA 0 134 1 1893 160 0 7 chr15 34719284 34719572 -66660949 + AluJb SINE Alu 1 286 -26 500 233 68 34 chr15 34719864 34720070 -66660451 + L1MEd LINE L1 973 1185 -4934 2687 129 51 7 chr15 34720070 34720480 -66660041 - MSTA LTR MaLR 0 428 1 4775 142 19 12 chr15 34720480 34721234 -66659287 - MSTA-int LTR MaLR 0 1651 893 4209 98 5 5 chr15 34721273 34721852 -66658669 - MER11C LTR ERVK -14 1057 479 458 285 125 56 chr15 34821855 34822380 -66558141 - L1M4 LINE L1 -1205 3815 1203 1675 147 0 15 chr15 34822477 34822749 -66557772 + AluSg SINE Alu 3 270 -40 248 313 0 21 chr15 34822898 34822994 -66557527 + MIR SINE MIR 102 195 -67 180 0 0 0 chr15 34823000 34823020 -66557501 + (T)n Simple_repeat Simple_repeat 1 20 0 283 341 22 0 chr15 34824711 34824802 -66555719 + MIR3 SINE MIR 109 201 -7 191 310 17 0 chr15 34824943 34825001 -66555520 + MIR SINE MIR 32 90 -118 2262 109 0 3 chr15 34825686 34825990 -66554531 + AluY SINE Alu 1 303 -8 528 144 31 21 chr15 34825990 34826087 -66554434 - U6 snRNA snRNA -8 99 2 1795 163 3 10 chr15 34826147 34826447 -66554074 + AluJb SINE Alu 1 298 -14 2132 119 16 23 chr15 34826483 34826793 -66553728 - AluJb SINE Alu -4 308 1 413 284 84 26 chr15 34826901 34827056 -66553465 - MIR3 SINE MIR -31 177 14 1614 131 142 4 chr15 34829908 34830182 -66550339 - AluJb SINE Alu 0 312 1 571 180 99 0 chr15 34831185 34831329 -66549192 - MIR SINE MIR -10 252 93 373 261 23 39 chr15 34831888 34832018 -66548503 - MER94 DNA DNA 0 134 7 1172 200 5 9 chr15 34837217 34837432 -66543089 - AluJb SINE Alu -98 214 1 2269 105 0 10 chr15 34837452 34837757 -66542764 - AluSc SINE Alu -7 302 1 430 255 9 19 chr15 34837762 34837868 -66542653 - MIR SINE MIR -110 152 48 2292 101 0 7 chr15 34840340 34840648 -66539873 - AluSq SINE Alu -5 308 3 485 250 75 118 chr15 34841042 34841401 -66539120 - L1ME3A LINE L1 -169 6001 5659 1205 174 53 0 chr15 34841401 34841608 -66538913 - MER20 DNA MER1_type 0 219 2 485 250 75 118 chr15 34841608 34841648 -66538873 - L1ME3A LINE L1 -511 5659 5619 897 163 13 26 chr15 34841905 34842113 -66538408 - AluJb SINE Alu 0 338 133 261 271 28 55 chr15 34842213 34842394 -66538127 + C-rich Low_complexity Low_complexity 5 180 0 1311 223 11 14 chr15 34842749 34843036 -66537485 - AluSg SINE Alu -14 286 1 2372 65 0 13 chr15 34843043 34843353 -66537168 - AluY SINE Alu -5 306 1 1423 224 0 14 chr15 34843353 34843639 -66536882 - AluJo SINE Alu -30 282 1 757 216 0 0 chr15 34843645 34843770 -66536751 - FLAM_C SINE Alu -7 126 2 1886 162 3 13 chr15 34843823 34844132 -66536389 - AluJb SINE Alu -6 306 1 2114 114 41 0 chr15 34845095 34845385 -66535136 + AluSx SINE Alu 1 302 -10 1992 140 3 0 chr15 34848268 34848602 -66531919 + AluSq SINE Alu 1 313 0 2328 119 0 16 chr15 34849158 34849295 -66531226 + AluSq SINE Alu 1 139 -174 2271 108 0 25 chr15 34849295 34849611 -66530910 + AluSq SINE Alu 1 308 -5 2328 119 0 16 chr15 34849611 34849791 -66530730 + AluSq SINE Alu 139 313 0 267 281 0 0 chr15 34849795 34849884 -66530637 + L1MC4 LINE L1 6614 6702 -1340 330 330 10 0 chr15 34849885 34849988 -66530533 + (CATATA)n Simple_repeat Simple_repeat 6 109 0 294 179 0 0 chr15 34849988 34850044 -66530477 + (TG)n Simple_repeat Simple_repeat 2 57 0 1232 252 38 64 chr15 34850250 34850336 -66530185 - L1MC/D LINE L1 -2051 5757 5670 1628 167 6 62 chr15 34850336 34850660 -66529861 + AluJo SINE Alu 1 306 -6 1232 252 38 64 chr15 34850660 34850720 -66529801 - L1MC/D LINE L1 -2138 5670 5610 2434 81 0 0 chr15 34850720 34851017 -66529504 + AluY SINE Alu 1 297 -14 1232 252 38 64 chr15 34851017 34851293 -66529228 - L1MC/D LINE L1 -2198 5610 5345 707 217 24 24 chr15 34851299 34851465 -66529056 - FRAM SINE Alu 0 166 1 1035 124 12 6 chr15 34851594 34851763 -66528758 - L1MB5 LINE L1 0 6174 6005 544 29 0 0 chr15 34851763 34851832 -66528689 + MER41A LTR ERV1 400 468 -86 1538 152 0 0 chr15 34851848 34852105 -66528416 - L1MB5 LINE L1 -156 6018 5762 1789 164 37 17 chr15 34852115 34852414 -66528107 - AluJo SINE Alu -7 305 1 1650 151 13 51 chr15 34852447 34852758 -66527763 - AluJo SINE Alu 0 312 14 362 248 48 29 chr15 34854685 34854790 -66525731 - MIR SINE MIR 0 262 156 1092 223 103 13 chr15 34854790 34855090 -66525431 + MER46C DNA MER2_type 1 327 -11 646 247 135 46 chr15 34855092 34855558 -66524963 - MLT1F LTR MaLR -1 541 1 370 280 160 8 chr15 34855585 34855710 -66524811 - MIR SINE MIR -118 144 1 399 121 0 52 chr15 34855831 34855924 -66524597 - L1MB2 LINE L1 -16 6167 6068 297 221 45 162 chr15 34858829 34858983 -66521538 + MIR SINE MIR 34 169 -93 210 284 30 15 chr15 34859976 34860043 -66520478 + GA-rich Low_complexity Low_complexity 5 72 0 1867 157 26 26 chr15 34860799 34861105 -66519416 - AluJb SINE Alu -6 306 1 771 150 0 17 chr15 34862082 34862202 -66518319 + AluJo SINE Alu 19 136 -176 2246 130 0 3 chr15 34865042 34865341 -66515180 + AluSx SINE Alu 1 298 -14 740 222 25 6 chr15 34866447 34866609 -66513912 + MIR3 SINE MIR 33 197 -11 1964 169 0 0 chr15 34866609 34866905 -66513616 + AluJo SINE Alu 1 296 -16 1450 172 3 52 chr15 34873519 34873810 -66506711 - AluY SINE Alu -7 304 28 1140 87 0 0 chr15 34874023 34874161 -66506360 - AluY SINE Alu -173 138 1 2205 102 17 0 chr15 34874283 34874578 -66505943 + AluSx SINE Alu 1 300 -12 1214 117 16 11 chr15 34875440 34875628 -66504893 + AluSq SINE Alu 109 297 -16 2100 111 3 0 chr15 34875889 34876187 -66504334 - AluSp SINE Alu -14 299 1 207 0 0 0 chr15 34876977 34877000 -66503521 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 14821 31 0 0 chr15 34877062 34879568 -66500953 - L1PA3 LINE L1 0 6155 3648 23668 57 41 44 chr15 34879708 34882989 -66497532 - L1PA3 LINE L1 -2857 3289 20 25 51 0 0 chr15 34883614 34883653 -66496868 + GC_rich Low_complexity Low_complexity 1 39 0 2071 119 0 6 chr15 34885948 34886259 -66494262 + AluSx SINE Alu 1 309 -3 1704 114 99 4 chr15 34886406 34886678 -66493843 + AluSq SINE Alu 2 299 -14 1709 157 0 20 chr15 34887170 34887463 -66493058 - AluJb SINE Alu -25 287 1 1902 138 10 0 chr15 34887614 34887903 -66492618 + AluJb SINE Alu 3 294 -18 2044 132 56 0 chr15 34888156 34888475 -66492046 - MER1B DNA MER1_type 0 337 1 800 137 0 0 chr15 34888992 34889116 -66491405 + FRAM SINE Alu 38 161 -15 1697 125 55 14 chr15 34889332 34889621 -66490900 + AluSx SINE Alu 1 301 -11 569 198 62 62 chr15 34890492 34890604 -66489917 - MER104 DNA Tc2 -1721 177 63 2033 84 0 0 chr15 34890604 34890866 -66489655 + AluSc SINE Alu 35 296 -13 569 198 62 62 chr15 34890866 34890915 -66489606 - MER104 DNA Tc2 -1834 64 16 1313 182 57 29 chr15 34890972 34891252 -66489269 + AluJb SINE Alu 2 289 -23 2315 84 13 0 chr15 34891554 34891863 -66488658 + AluSp SINE Alu 1 313 0 506 287 13 7 chr15 34892867 34893017 -66487504 - MIR SINE MIR -15 247 97 2109 87 3 48 chr15 34893403 34893713 -66486808 + AluSg SINE Alu 1 296 -14 355 253 104 66 chr15 34894113 34894316 -66486205 - HAL1 LINE L1 -1207 3305 1113 1610 164 16 36 chr15 34894490 34894794 -66485727 + AluSx SINE Alu 2 299 -13 1825 133 7 31 chr15 34894961 34895255 -66485266 + AluSx SINE Alu 1 287 -25 264 30 0 0 chr15 34895255 34895288 -66485233 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 210 380 11 0 chr15 34896401 34896426 -66484095 - L2 LINE L2 0 3313 3290 1386 229 52 43 chr15 34896426 34896889 -66483632 + MLT1C LTR MaLR 1 467 0 210 380 11 0 chr15 34896889 34896955 -66483566 - L2 LINE L2 -23 3290 3221 680 234 0 58 chr15 34896982 34897153 -66483368 + AluJo SINE Alu 127 287 -25 1641 181 27 0 chr15 34897164 34897462 -66483059 + AluJb SINE Alu 5 310 -2 1761 207 103 40 chr15 34897484 34897693 -66482828 - L2 LINE L2 -55 3258 3063 1927 100 6 56 chr15 34897693 34898012 -66482509 - AluSx SINE Alu -9 303 1 1761 207 103 40 chr15 34898012 34898572 -66481949 - L2 LINE L2 -250 3063 2457 1440 118 22 0 chr15 34900132 34900360 -66480161 + AluSx SINE Alu 1 233 -79 829 204 51 0 chr15 34900535 34900692 -66479829 + FRAM SINE Alu 1 164 -12 471 316 47 10 chr15 34901068 34901261 -66479260 - L3 LINE CR1 -9 1568 1369 391 259 51 107 chr15 34901271 34901487 -66479034 - MIR SINE MIR -12 250 47 775 213 33 16 chr15 34901813 34901996 -66478525 + L1ME3 LINE L1 5967 6152 -10 782 194 32 11 chr15 34902280 34902466 -66478055 + L1MB7 LINE L1 5929 6118 -66 945 119 7 13 chr15 34902466 34902617 -66477904 + AluSq/x SINE Alu 1 150 -162 396 0 0 0 chr15 34902948 34902992 -66477529 + (CA)n Simple_repeat Simple_repeat 1 44 0 722 192 8 0 chr15 34903308 34903433 -66477088 + FLAM_C SINE Alu 1 126 -7 1375 160 0 35 chr15 34903456 34903712 -66476809 + AluJb SINE Alu 11 257 -55 1999 108 0 0 chr15 34903799 34904076 -66476445 + AluYa5 SINE Alu 1 277 -34 234 291 12 12 chr15 34904239 34904325 -66476196 - AluS SINE Alu -206 97 12 216 217 0 43 chr15 34904681 34904727 -66475794 + MER5A DNA MER1_type 61 104 -85 1277 107 93 0 chr15 34904758 34904963 -66475558 + AluSq SINE Alu 1 224 -89 198 233 0 0 chr15 34905087 34905147 -66475374 + CT-rich Low_complexity Low_complexity 1 60 0 394 103 0 52 chr15 34905176 34905234 -66475287 - LTR8 LTR ERV1 -88 603 549 1828 132 7 7 chr15 34905243 34905530 -66474991 - AluSx SINE Alu -25 287 1 370 237 52 21 chr15 34905637 34905734 -66474787 - L2 LINE L2 -5 3308 3209 1156 154 0 10 chr15 34905835 34906030 -66474491 - AluJo SINE Alu -25 287 95 192 254 111 0 chr15 34906030 34906093 -66474428 + L2 LINE L2 2339 2408 -906 258 156 89 0 chr15 34906737 34906782 -66473739 + L2 LINE L2 3262 3310 -3 * 594 249 101 43 chr15 34906750 34906871 -66473650 - MIR SINE MIR -1 261 122 237 83 0 0 chr15 34906871 34906907 -66473614 + (CAA)n Simple_repeat Simple_repeat 2 37 0 594 249 101 43 chr15 34906907 34906994 -66473527 - MIR SINE MIR -140 122 41 478 295 0 8 chr15 34907249 34907371 -66473150 + MIR3 SINE MIR 58 178 -30 721 194 0 0 chr15 34907380 34907514 -66473007 + FRAM SINE Alu 40 173 -3 1903 138 0 7 chr15 34907734 34908030 -66472491 + AluSx SINE Alu 6 299 -13 2086 91 7 19 chr15 34908033 34908342 -66472179 + AluSx SINE Alu 8 312 0 375 256 51 34 chr15 34908577 34908694 -66471827 + MIR3 SINE MIR 83 201 -7 1947 118 7 20 chr15 34909202 34909506 -66471015 + AluSx SINE Alu 1 300 -12 462 18 0 0 chr15 34909506 34909561 -66470960 + (TA)n Simple_repeat Simple_repeat 1 55 0 825 191 51 0 chr15 34909655 34909812 -66470709 + FRAM SINE Alu 1 164 -12 447 319 48 11 chr15 34910188 34910376 -66470145 - L3 LINE CR1 -9 1568 1374 795 188 32 11 chr15 34910871 34911057 -66469464 + L1MB7 LINE L1 5929 6118 -66 2291 82 10 0 chr15 34911057 34911361 -66469160 + AluSq SINE Alu 1 307 -6 308 256 0 39 chr15 34911484 34911562 -66468959 + MER5A DNA MER1_type 2 76 -113 22 0 0 0 chr15 34911577 34911599 -66468922 + AT_rich Low_complexity Low_complexity 1 22 0 1572 88 0 0 chr15 34911606 34911811 -66468710 + AluSg SINE Alu 1 205 -105 290 186 57 43 chr15 34911961 34912031 -66468490 + L1ME3 LINE L1 6004 6074 -88 1038 252 19 0 chr15 34912063 34912277 -66468244 + MER82 DNA MER2_type 436 653 0 305 172 31 0 chr15 34912414 34912478 -66468043 - MLT1J2 LTR MaLR -316 134 69 1827 154 3 3 chr15 34912577 34912869 -66467652 + AluSx SINE Alu 1 292 -20 663 115 0 0 chr15 34912880 34912984 -66467537 - AluSp/q SINE Alu -4 309 206 189 171 0 0 chr15 34913226 34913261 -66467260 + MIR SINE MIR 110 144 -118 2205 88 7 3 chr15 34913261 34913566 -66466955 + AluSc SINE Alu 1 306 -3 1923 112 16 35 chr15 34913566 34913878 -66466643 + AluSx SINE Alu 5 310 -2 375 256 51 34 chr15 34914110 34914227 -66466294 + MIR3 SINE MIR 83 201 -7 297 0 0 0 chr15 34914783 34914816 -66465705 + (CTG)n Simple_repeat Simple_repeat 1 33 0 979 218 86 25 chr15 34916125 34916368 -66464153 + MIR SINE MIR 3 260 -2 546 260 202 36 chr15 34918132 34918355 -66462166 + MIR SINE MIR 3 262 0 476 254 42 68 chr15 34918484 34918679 -66461842 + MIR3 SINE MIR 20 212 -50 286 204 0 19 chr15 34918646 34918700 -66461821 - L2 LINE L2 -19 3253 3201 * 592 173 0 0 chr15 34919699 34919803 -66460718 - U13 snRNA snRNA 0 104 1 2077 106 3 19 chr15 34919839 34920150 -66460371 + AluSg SINE Alu 5 310 0 405 0 0 0 chr15 34922446 34922491 -66458030 + (CA)n Simple_repeat Simple_repeat 2 46 0 370 261 22 0 chr15 34922754 34922846 -66457675 - MIR3 SINE MIR -17 191 98 1356 145 0 148 chr15 34923288 34923451 -66457070 - AluJo SINE Alu -24 288 199 2060 114 0 7 chr15 34923451 34923750 -66456771 - AluSg SINE Alu -13 297 1 1356 145 0 148 chr15 34923750 34923924 -66456597 - AluJo SINE Alu -113 199 1 214 178 67 0 chr15 34923947 34923992 -66456529 + CT-rich Low_complexity Low_complexity 4 51 0 390 198 50 40 chr15 34924246 34924347 -66456174 - L2 LINE L2 -8 3264 3163 790 297 36 9 chr15 34924417 34924639 -66455882 + MIR SINE MIR 35 262 0 2154 91 10 0 chr15 34924748 34925044 -66455477 - AluSx SINE Alu -11 301 3 933 163 0 53 chr15 34925046 34925236 -66455285 + AluJb SINE Alu 115 294 -18 342 129 16 16 chr15 34925241 34925303 -66455218 + AluJ/FLAM SINE Alu 2 63 -239 273 222 0 0 chr15 34925403 34925466 -66455055 + T-rich Low_complexity Low_complexity 1 63 0 230 284 0 15 chr15 34925490 34925557 -66454964 + CT-rich Low_complexity Low_complexity 1 66 0 889 197 30 30 chr15 34925684 34925887 -66454634 - AluSq SINE Alu -74 239 37 220 323 21 21 chr15 34925900 34925996 -66454525 + MIR SINE MIR 45 140 -68 407 307 213 31 chr15 34926880 34927167 -66453354 + L3 LINE CR1 1219 1557 -20 1961 131 0 0 chr15 34927337 34927611 -66452910 - AluSx SINE Alu 0 312 39 2259 95 0 0 chr15 34927731 34928047 -66452474 - AluSg SINE Alu 0 316 1 882 148 0 7 chr15 34928213 34928348 -66452173 + AluSg SINE Alu 3 136 -174 1161 136 0 17 chr15 34928684 34928861 -66451660 - AluSq SINE Alu -48 265 92 2120 116 3 3 chr15 34929529 34929823 -66450698 - AluSc SINE Alu -15 294 1 1557 149 11 23 chr15 34930993 34931255 -66449266 - AluSg SINE Alu -51 259 1 2098 147 16 0 chr15 34931381 34931687 -66448834 - AluSx SINE Alu -1 311 1 33 56 0 0 chr15 34931879 34931933 -66448588 + AT_rich Low_complexity Low_complexity 1 54 0 813 103 0 0 chr15 34932196 34932303 -66448218 - U6 snRNA snRNA 0 107 1 339 257 57 0 chr15 34932401 34932506 -66448015 - MIR SINE MIR -10 252 142 2344 91 3 3 chr15 34932512 34932808 -66447713 - AluSq SINE Alu -17 296 1 2417 98 0 0 chr15 34932822 34933129 -66447392 - AluSc SINE Alu -2 307 1 2210 77 3 70 chr15 34933791 34934103 -66446418 - AluSg SINE Alu -19 291 1 287 318 27 7 chr15 34934489 34934637 -66445884 + MIR SINE MIR 97 247 -15 821 150 0 0 chr15 34935054 34935174 -66445347 - FLAM_C SINE Alu -22 121 2 298 140 105 0 chr15 34935226 34935283 -66445238 + HsTC2 DNA Tc2 2 64 -1834 597 118 0 12 chr15 34935283 34935496 -66445025 - AluSc SINE Alu -9 300 35 247 286 80 18 chr15 34935497 34935609 -66444912 + MER104 DNA Tc2 59 177 -3 1025 152 71 41 chr15 34936481 34936678 -66443843 - AluSc SINE Alu -8 301 99 2203 124 0 0 chr15 34937225 34937532 -66442989 + AluSx SINE Alu 1 307 -5 711 165 0 0 chr15 34937717 34937838 -66442683 - FRAM SINE Alu -15 161 41 2465 81 0 0 chr15 34938004 34938313 -66442208 + AluY SINE Alu 1 309 -2 2028 132 56 0 chr15 34938693 34939012 -66441509 + MER1B DNA MER1_type 1 337 0 2002 140 11 0 chr15 34939265 34939550 -66440971 - AluJb SINE Alu -22 290 3 1749 181 0 17 chr15 34939701 34939999 -66440522 + AluJb SINE Alu 1 293 -19 2474 64 0 3 chr15 34940292 34940588 -66439933 + AluY SINE Alu 1 295 -16 1867 113 98 4 chr15 34940803 34941078 -66439443 - AluSq SINE Alu -12 301 1 230 290 19 42 chr15 34941227 34941353 -66439168 + GA-rich Low_complexity Low_complexity 5 212 0 433 329 0 20 chr15 34941375 34941521 -66439000 + G-rich Low_complexity Low_complexity 3 145 0 789 222 67 0 chr15 34941626 34941806 -66438715 - L1M4 LINE L1 -3364 2782 2591 983 199 0 37 chr15 34941811 34942002 -66438519 - AluJb SINE Alu -11 301 118 2219 113 3 6 chr15 34942112 34942423 -66438098 - AluSx SINE Alu -2 310 1 225 0 0 0 chr15 34943748 34943773 -66436748 + (A)n Simple_repeat Simple_repeat 1 25 0 2304 61 0 0 chr15 34943775 34944080 -66436441 + AluY SINE Alu 3 307 0 205 283 9 38 chr15 34944463 34944569 -66435952 + (CCCCAG)n Simple_repeat Simple_repeat 2 104 0 2284 92 3 3 chr15 34946501 34946795 -66433726 + AluSp SINE Alu 1 294 -19 2271 101 3 7 chr15 34947079 34947376 -66433145 - AluSq SINE Alu -17 296 1 2108 86 18 0 chr15 34947381 34947694 -66432827 - AluSx SINE Alu 0 318 1 914 71 9 0 chr15 34947838 34947951 -66432570 + AluSq/x SINE Alu 22 135 -178 1614 162 6 60 chr15 34947951 34948266 -66432255 + AluJb SINE Alu 1 298 -14 522 53 53 0 chr15 34948381 34948456 -66432065 - AluSg/x SINE Alu -17 295 217 855 133 0 73 chr15 34948456 34948621 -66431900 - AluSq SINE Alu -160 153 1 2254 66 24 0 chr15 34949417 34949704 -66430817 + AluY SINE Alu 1 294 -17 2224 114 0 3 chr15 34949769 34950067 -66430454 + AluSg SINE Alu 1 297 -13 329 245 75 0 chr15 34951260 34951354 -66429167 - HsTC2 DNA Tc2 0 1898 1798 2054 108 0 0 chr15 34952014 34952282 -66428239 - AluSx SINE Alu -30 282 15 2435 93 0 0 chr15 34953033 34953333 -66427188 + AluSc SINE Alu 1 300 -9 1274 164 134 22 chr15 34953380 34953648 -66426873 + AluJo SINE Alu 1 298 -14 1361 160 143 0 chr15 34953649 34953887 -66426634 + AluJb SINE Alu 24 295 -17 2214 97 0 7 chr15 34953963 34954253 -66426268 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr15 34954810 34954831 -66425690 + AT_rich Low_complexity Low_complexity 1 21 0 633 127 34 34 chr15 34954944 34955062 -66425459 + AluSp/q SINE Alu 183 300 -13 386 267 127 0 chr15 34955070 34955220 -66425301 + MIR SINE MIR 71 239 -23 197 306 0 32 chr15 34955561 34955623 -66424898 - MER5B DNA MER1_type -104 74 15 446 244 36 65 chr15 34956113 34956281 -66424240 - L2 LINE L2 0 3313 3151 459 225 126 9 chr15 34956285 34956396 -66424125 + FLAM_A SINE Alu 1 124 -9 2635 40 0 0 chr15 34956407 34956704 -66423817 + AluY SINE Alu 1 297 -14 2139 106 0 11 chr15 34956709 34956992 -66423529 + AluSg SINE Alu 1 280 -30 890 117 21 163 chr15 34957037 34957093 -66423428 + L1MB3 LINE L1 5444 5506 -677 2282 78 27 0 chr15 34957093 34957389 -66423132 + AluSp SINE Alu 1 304 -9 890 117 21 163 chr15 34957389 34957507 -66423014 + L1MB3 LINE L1 5506 5639 -544 2075 131 3 16 chr15 34957507 34957819 -66422702 + AluSx SINE Alu 1 308 -4 2116 136 7 3 chr15 34957824 34958133 -66422388 + AluSx SINE Alu 1 310 -2 2260 88 0 0 chr15 34958139 34958445 -66422076 + AluY SINE Alu 1 306 0 890 117 21 163 chr15 34958445 34958494 -66422027 + L1MB3 LINE L1 5594 5648 -535 758 220 105 31 chr15 34958497 34958688 -66421833 - MER6B DNA MER2_type -5 205 1 970 154 24 12 chr15 34958701 34958870 -66421651 + L1MB3 LINE L1 5679 5849 -334 2247 78 7 36 chr15 34958934 34959241 -66421280 + AluSq SINE Alu 1 298 -15 1801 162 3 3 chr15 34959252 34959549 -66420972 + AluJo SINE Alu 14 310 -2 278 176 88 77 chr15 34959549 34959640 -66420881 + L1MC/D LINE L1 5726 5817 -1991 2346 70 0 10 chr15 34959661 34959961 -66420560 - AluY SINE Alu -14 297 1 21 36 0 0 chr15 34959961 34959989 -66420532 + AT_rich Low_complexity Low_complexity 1 28 0 2378 79 3 13 chr15 34960088 34960391 -66420130 + AluY SINE Alu 1 300 -11 2470 74 3 0 chr15 34961362 34961661 -66418860 + AluSp SINE Alu 2 301 -12 2214 126 0 0 chr15 34962422 34962724 -66417797 - AluSq SINE Alu -11 302 1 278 302 40 40 chr15 34962749 34962875 -66417646 - MIR3 SINE MIR -48 160 35 1705 166 3 18 chr15 34963065 34963348 -66417173 + AluJo SINE Alu 15 293 -19 21 0 0 0 chr15 34964845 34964866 -66415655 + AT_rich Low_complexity Low_complexity 1 21 0 2336 103 0 7 chr15 34964878 34965188 -66415333 + AluSp SINE Alu 5 312 -1 2202 110 20 0 chr15 34965306 34965605 -66414916 + AluSg SINE Alu 5 309 -1 895 114 14 57 chr15 34965631 34965771 -66414750 + AluJo SINE Alu 1 134 -178 207 277 0 0 chr15 34966121 34966186 -66414335 + T-rich Low_complexity Low_complexity 1 65 0 2205 87 7 7 chr15 34966714 34967002 -66413519 + AluSq SINE Alu 9 296 -17 354 198 0 6 chr15 34967157 34967229 -66413292 - AluSp SINE Alu -107 196 136 2058 83 69 7 chr15 34968378 34968667 -66411854 - AluSp SINE Alu -6 307 1 501 209 310 6 chr15 34969458 34969616 -66410905 + MER3 DNA MER1_type 4 209 0 3956 164 58 4 chr15 35070150 35071443 -66309078 - L1PA15 LINE L1 -338 5827 4470 212 271 0 34 chr15 35071556 35071615 -66308906 - MIR SINE MIR -192 70 14 298 0 23 23 chr15 35071711 35071754 -66308767 + (CA)n Simple_repeat Simple_repeat 1 43 0 26 0 0 0 chr15 35072178 35072204 -66308317 + AT_rich Low_complexity Low_complexity 1 26 0 2256 163 9 0 chr15 35072490 35072833 -66307688 - MER7A DNA MER2_type -1 345 2 259 247 0 39 chr15 35073618 35073695 -66306826 + CT-rich Low_complexity Low_complexity 1 74 0 5765 21 6 0 chr15 35074151 35074812 -66305709 - L1P LINE L1 -1592 4554 3890 575 56 14 0 chr15 35074805 35074876 -66305645 + L1P LINE L1 3788 3859 -2287 * 1808 125 0 4 chr15 35075594 35075850 -66304671 + AluSx SINE Alu 44 298 -14 24 0 0 0 chr15 35075985 35076009 -66304512 + AT_rich Low_complexity Low_complexity 1 24 0 1318 181 49 29 chr15 35076198 35076579 -66303942 + L1M4 LINE L1 5059 5447 -727 295 357 159 19 chr15 35076942 35077384 -66303137 - L2 LINE L2 -84 3229 2728 233 316 92 0 chr15 35077819 35077917 -66302604 - MIR SINE MIR -30 232 126 180 0 0 0 chr15 35079623 35079643 -66300878 + (T)n Simple_repeat Simple_repeat 1 20 0 733 269 60 67 chr15 35081605 35081936 -66298585 - L2 LINE L2 0 3313 2985 199 196 43 0 chr15 35082690 35082736 -66297785 + MIR SINE MIR 215 262 0 438 337 195 21 chr15 35084242 35084759 -66295762 - L3 LINE CR1 -3 1574 968 620 226 226 57 chr15 35084954 35085268 -66295253 + MLT1G1 LTR MaLR 222 588 -7 210 156 0 0 chr15 35085476 35085521 -66295000 + (CCCTAG)n Simple_repeat Simple_repeat 2 46 0 266 314 13 56 chr15 35085697 35085822 -66294699 + MIR3 SINE MIR 57 177 -31 180 0 0 0 chr15 35086084 35086104 -66294417 + (CAGCC)n Simple_repeat Simple_repeat 1 20 0 202 347 144 41 chr15 35086464 35086735 -66293786 - L3b LINE CR1 -8 1575 1277 283 226 323 13 chr15 35087189 35087344 -66293177 + LTR41 LTR ERVL 3 205 -568 443 245 106 37 chr15 35087501 35087746 -66292775 + LTR41 LTR ERVL 506 767 -6 435 200 0 0 chr15 35087770 35087850 -66292671 - MIR SINE MIR -70 192 113 182 331 44 52 chr15 35087902 35088038 -66292483 + MIR3 SINE MIR 43 177 -31 456 221 277 20 chr15 35088690 35088885 -66291636 + MIR SINE MIR 4 248 -14 300 111 0 0 chr15 35089173 35089218 -66291303 + (CA)n Simple_repeat Simple_repeat 1 45 0 227 259 0 0 chr15 35089693 35089747 -66290774 - MIR SINE MIR -129 133 80 2868 234 23 13 chr15 35090342 35091030 -66289491 - L1ME1 LINE L1 -15 6151 5457 986 156 25 0 chr15 35091766 35091926 -66288595 - MLT1B LTR MaLR 0 390 227 235 192 0 123 chr15 35092026 35092099 -66288422 - MLT1B LTR MaLR -326 64 1 3300 167 49 36 chr15 35092111 35092804 -66287717 + L1MA8 LINE L1 5586 6287 -4 304 225 31 78 chr15 35092847 35092976 -66287545 - MIR SINE MIR -21 241 119 2138 179 35 98 chr15 35093338 35093943 -66286578 - MLT1F1 LTR MaLR 0 567 1 259 252 75 9 chr15 35094042 35094149 -66286372 + MIR3 SINE MIR 85 198 -10 1624 123 0 0 chr15 35095802 35096021 -66284500 + AluSx SINE Alu 1 219 -93 753 131 0 0 chr15 35096021 35096120 -66284401 + AluSg/x SINE Alu 188 286 -26 1616 232 47 7 chr15 35096132 35096554 -66283967 + Charlie4a DNA MER1_type 69 507 -1 242 260 65 52 chr15 35097895 35098049 -66282472 - L1ME4a LINE L1 -126 5995 5840 231 204 0 0 chr15 35098587 35098636 -66281885 + (CTTTG)n Simple_repeat Simple_repeat 2 50 0 243 278 67 0 chr15 35099417 35099507 -66281014 - MIR3 SINE MIR -13 195 100 1211 206 67 58 chr15 35099832 35100192 -66280329 + L1ME2 LINE L1 5800 6162 -2 2908 229 63 29 chr15 35100205 35102623 -66277898 + L1M4 LINE L1 2272 4910 -1236 198 238 24 0 chr15 35102723 35102765 -66277756 - MIR SINE MIR -18 244 202 301 345 73 44 chr15 35102953 35103228 -66277293 + L2 LINE L2 2834 3116 -197 319 262 124 28 chr15 35103472 35103617 -66276904 + MIR3 SINE MIR 23 181 -27 648 241 50 54 chr15 35103638 35103879 -66276642 - MIR SINE MIR -4 258 19 182 310 23 69 chr15 35104677 35104764 -66275757 + MER5A DNA MER1_type 60 142 -47 21 36 0 0 chr15 35106598 35106626 -66273895 + AT_rich Low_complexity Low_complexity 1 28 0 311 308 33 25 chr15 35106939 35107059 -66273462 + L2 LINE L2 3189 3309 -4 324 0 0 0 chr15 35109422 35109458 -66271063 + (TG)n Simple_repeat Simple_repeat 1 36 0 250 267 122 0 chr15 35109603 35109693 -66270828 + MIR3 SINE MIR 3 103 -105 277 244 24 104 chr15 35109707 35109871 -66270650 - L2 LINE L2 -179 3093 2943 510 147 53 11 chr15 35110128 35110223 -66270298 + L1PA15 LINE L1 6059 6157 -8 848 214 0 0 chr15 35110566 35110725 -66269796 + FRAM SINE Alu 1 158 -18 3174 228 43 52 chr15 35111205 35112538 -66267983 - L1ME1 LINE L1 -23 6423 5088 627 301 27 35 chr15 35112827 35113086 -66267435 + MIR SINE MIR 2 258 -4 621 260 128 23 chr15 35113994 35114436 -66266085 + LTR33 LTR ERVL 1 521 0 218 200 55 36 chr15 35114509 35114564 -66265957 - MIR SINE MIR -12 250 195 637 235 86 6 chr15 35114637 35114799 -66265722 - MIR SINE MIR -67 195 21 254 212 47 12 chr15 35115933 35116018 -66264503 - L1ME1 LINE L1 -4333 2093 2006 305 223 11 0 chr15 35116018 35116112 -66264409 + (CATATA)n Simple_repeat Simple_repeat 5 99 0 816 310 72 34 chr15 35116271 35116716 -66263805 - LTR16B LTR ERVL -2 462 1 355 307 104 12 chr15 35118514 35118677 -66261844 + MIR SINE MIR 12 189 -73 1360 107 22 45 chr15 35118949 35119173 -66261348 - L1MA4 LINE L1 -2 6298 6080 1386 229 10 7 chr15 35119759 35120052 -66260469 - AluJo SINE Alu -18 294 1 1270 307 100 28 chr15 35120108 35120930 -66259591 - L2 LINE L2 -615 2699 1819 22 0 0 0 chr15 35121133 35121155 -66259366 + AT_rich Low_complexity Low_complexity 1 22 0 8281 18 0 1 chr15 35122047 35123400 -66257121 + L1PA2 LINE L1 4803 6154 -1 303 261 91 10 chr15 35123718 35123817 -66256704 - MIR SINE MIR -22 186 79 3315 79 18 20 chr15 35124137 35124582 -66255939 - MLT2A1 LTR ERVL 0 444 1 202 255 135 92 chr15 35124709 35124850 -66255671 - MER5A DNA MER1_type 0 189 43 361 250 40 48 chr15 35125180 35125304 -66255217 + MIR SINE MIR 20 142 -66 306 0 0 0 chr15 35125646 35125680 -66254841 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1645 197 0 7 chr15 35125680 35125958 -66254563 - AluJo SINE Alu -32 280 5 465 143 0 14 chr15 35126586 35126656 -66253865 + Tigger2 DNA MER2_type 1 69 -2649 * 2154 138 128 20 chr15 35126639 35127045 -66253476 + Tigger2 DNA MER2_type 2267 2716 -2 1709 193 5 108 chr15 35127045 35127257 -66253264 - MLT1B LTR MaLR 0 390 244 1806 103 0 0 chr15 35127257 35127491 -66253030 - AluSg/x SINE Alu -8 302 69 1709 193 5 108 chr15 35127491 35127713 -66252808 - MLT1B LTR MaLR -146 244 1 776 180 16 139 chr15 35127959 35128204 -66252317 - MLT1A1 LTR MaLR -34 331 117 182 274 69 49 chr15 35129183 35129285 -66251236 + L2 LINE L2 2956 3059 -213 257 133 44 0 chr15 35129391 35129436 -66251085 + L2 LINE L2 3267 3313 0 574 332 57 8 chr15 35129600 35129844 -66250677 - MIR SINE MIR -6 256 1 563 301 66 0 chr15 35131065 35131248 -66249273 - MIR SINE MIR -66 196 2 855 240 20 10 chr15 35131323 35131527 -66248994 + MIR SINE MIR 57 262 0 235 312 46 37 chr15 35131955 35132064 -66248457 + L2 LINE L2 3150 3259 -13 207 69 0 0 chr15 35132065 35132094 -66248427 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 1933 136 75 36 chr15 35132294 35132655 -66247866 + THE1C LTR MaLR 1 375 0 939 186 12 12 chr15 35133649 35133821 -66246700 + MER5A DNA MER1_type 15 186 -3 238 250 355 0 chr15 35133853 35133977 -66246544 + MER5B DNA MER1_type 8 175 -3 659 329 99 14 chr15 35137159 35137451 -66243070 - MLT1J LTR MaLR -194 317 1 243 274 24 12 chr15 35137775 35137859 -66242662 + L1 LINE L1 4884 4968 -1178 254 346 12 38 chr15 35139261 35139470 -66241051 - MIR SINE MIR -39 223 22 341 300 31 23 chr15 35140229 35140359 -66240162 + L2 LINE L2 3182 3312 -1 890 128 0 8 chr15 35140675 35140808 -66239713 - AluSg/x SINE Alu -9 303 172 4948 173 120 12 chr15 35141524 35142502 -66238019 - Tigger6a DNA MER2_type 0 1083 1 260 182 18 0 chr15 35142800 35142855 -66237666 + L2 LINE L2 2997 3052 -220 297 280 97 0 chr15 35142882 35142975 -66237546 + L2 LINE L2 3169 3270 -2 1654 70 0 14 chr15 35144294 35144509 -66236012 + AluY SINE Alu 100 311 0 695 275 45 15 chr15 35144536 35144736 -66235785 - MLT1I LTR MaLR -203 206 1 3041 194 18 32 chr15 35145349 35145911 -66234610 + MLT2B3 LTR ERVL 1 554 0 2029 137 9 12 chr15 35146756 35147077 -66233444 + MER7A DNA MER2_type 4 321 -25 482 288 41 6 chr15 35147766 35147936 -66232585 - MIR SINE MIR -7 255 80 1212 194 80 123 chr15 35147947 35148420 -66232101 - LTR45B LTR ERV1 -10 479 27 379 316 92 5 chr15 35148435 35148631 -66231890 - L2 LINE L2 -671 2643 2431 2298 54 21 4 chr15 35149656 35149957 -66230564 + AluY SINE Alu 1 306 0 1656 119 97 0 chr15 35150037 35150306 -66230215 - L1MA1 LINE L1 -4 6298 6004 399 174 47 200 chr15 35150336 35150426 -66230095 + MER103 DNA DNA 4 53 -113 2103 107 18 11 chr15 35150426 35150734 -66229787 - AluSx SINE Alu 0 310 1 399 174 47 200 chr15 35150734 35150832 -66229689 + MER103 DNA DNA 53 164 -2 2045 148 60 49 chr15 35151517 35151902 -66228619 - MLT1B LTR MaLR -1 389 1 3172 124 2 2 chr15 35152058 35152500 -66228021 - L1PA16 LINE L1 -9 6157 5716 432 236 187 8 chr15 35152508 35152631 -66227890 - LTR67 LTR ERVL -339 218 74 409 226 143 42 chr15 35152821 35152989 -66227532 + LTR67 LTR ERVL 365 549 -8 311 216 216 0 chr15 35153131 35153233 -66227288 - MIR3 SINE MIR 0 208 85 364 234 0 13 chr15 35154331 35154408 -66226113 - MLT1A1 LTR MaLR -289 76 1 187 202 24 83 chr15 35154427 35154511 -66226010 + L3 LINE CR1 1242 1320 -257 2104 180 38 27 chr15 35155127 35155668 -66224853 - MLT2A2 LTR ERVL -7 547 1 2104 171 113 8 chr15 35155777 35156168 -66224353 - MSTB1 LTR MaLR 0 432 1 440 220 284 0 chr15 35156795 35156936 -66223585 + MER5A DNA MER1_type 8 188 -1 679 264 30 0 chr15 35156945 35157112 -66223409 - MER5B DNA MER1_type -6 172 1 3647 126 34 0 chr15 35157207 35157740 -66222781 - L1PA16 LINE L1 -3 6163 5613 2231 109 0 6 chr15 35158288 35158600 -66221921 + AluY SINE Alu 2 311 0 1147 108 38 0 chr15 35158600 35158757 -66221764 + AluSp SINE Alu 134 296 -17 360 298 0 26 chr15 35159088 35159202 -66221319 + MIR3 SINE MIR 69 179 -29 1415 253 48 5 chr15 35159468 35159887 -66220634 + L2 LINE L2 1829 2265 -1049 443 255 134 19 chr15 35161820 35161977 -66218544 - MER5A DNA MER1_type -14 175 1 189 241 0 0 chr15 35163769 35163823 -66216698 + (CA)n Simple_repeat Simple_repeat 1 54 0 195 326 109 0 chr15 35163825 35163917 -66216604 + L2 LINE L2 3152 3253 -19 2045 149 0 7 chr15 35167029 35167325 -66213196 + AluSx SINE Alu 1 294 -18 1536 168 77 157 chr15 35167581 35168128 -66212393 - MLT1D LTR MaLR 0 505 3 802 307 41 28 chr15 35168128 35168490 -66212031 + LTR16A LTR ERVL 78 444 -6 529 323 49 0 chr15 35168496 35168719 -66211802 + HERV16 LTR ERVL 1 234 -4762 1210 293 79 15 chr15 35168973 35169427 -66211094 + HERV16 LTR ERVL 590 1072 -3924 2469 78 0 3 chr15 35169673 35169982 -66210539 + AluY SINE Alu 1 308 -3 1278 261 35 13 chr15 35169983 35170301 -66210220 + HERV16 LTR ERVL 1713 2037 -2959 8977 187 55 19 chr15 35170315 35172378 -66208143 + L1MA9 LINE L1 3184 5320 -826 30 69 0 0 chr15 35172378 35172436 -66208085 + AT_rich Low_complexity Low_complexity 1 58 0 5335 169 25 6 chr15 35172436 35173420 -66207101 + L1MA9 LINE L1 5305 6308 -4 259 229 0 0 chr15 35173441 35173489 -66207032 + HERV16 LTR ERVL 3237 3284 -1712 * 1828 328 64 30 chr15 35173481 35175134 -66205387 + HERV16 LTR ERVL 3617 5365 -399 1184 266 52 23 chr15 35175312 35175699 -66204822 + LTR16A LTR ERVL 31 428 -22 533 235 105 6 chr15 35175848 35176010 -66204511 + L1ME4a LINE L1 5725 5902 -219 442 257 124 0 chr15 35177447 35177552 -66202969 - L2 LINE L2 -5 3308 3191 471 281 51 22 chr15 35178093 35178271 -66202250 + MIR SINE MIR 7 189 -73 436 240 22 77 chr15 35179109 35179292 -66201229 + MER5B DNA MER1_type 3 175 -3 232 344 165 19 chr15 35180677 35180889 -66199632 - MIR SINE MIR 0 262 20 329 341 36 0 chr15 35181342 35181480 -66199041 + MIR SINE MIR 2 144 -118 1524 54 21 0 chr15 35182255 35182441 -66198080 + MER107 DNA MER1_type 1 190 -7 431 284 45 80 chr15 35182727 35182776 -66197745 - MER5A DNA MER1_type -16 173 124 2195 120 3 0 chr15 35182776 35183075 -66197446 + AluSq SINE Alu 1 300 -13 431 284 45 80 chr15 35183075 35183201 -66197320 - MER5A DNA MER1_type -65 124 4 336 260 161 20 chr15 35184694 35184948 -66195573 - L1ME4a LINE L1 -2 6119 5830 * 381 292 65 77 chr15 35184918 35185340 -66195181 - L1ME4a LINE L1 -768 5378 5106 268 275 0 11 chr15 35185444 35185535 -66194986 - L1MC4a LINE L1 -1748 6060 5971 267 290 0 0 chr15 35186370 35186432 -66194089 + L2 LINE L2 3003 3064 -208 362 230 75 58 chr15 35187410 35187498 -66193023 - MER69 DNA AcHobo 0 2526 2441 2091 104 32 4 chr15 35187498 35187776 -66192745 + AluSg SINE Alu 3 288 -22 362 230 75 58 chr15 35187776 35187861 -66192660 - MER69 DNA AcHobo -85 2441 2350 1594 241 123 18 chr15 35187919 35188422 -66192099 - MER69 DNA AcHobo -670 556 1 181 191 21 0 chr15 35188683 35188730 -66191791 - MIR SINE MIR -48 214 167 322 264 10 32 chr15 35188730 35189031 -66191490 + GA-rich Low_complexity Low_complexity 1 294 0 309 323 37 37 chr15 35189740 35189901 -66190620 - L3b LINE CR1 -61 1522 1362 210 118 0 0 chr15 35189962 35189996 -66190525 + (A)n Simple_repeat Simple_repeat 1 34 0 2148 136 3 0 chr15 35190013 35190322 -66190199 - AluSx SINE Alu -2 310 1 316 364 85 6 chr15 35190951 35191127 -66189394 + MIR3 SINE MIR 14 203 -5 352 293 92 12 chr15 35191838 35192002 -66188519 + L1ME LINE L1 5504 5680 -441 321 314 112 12 chr15 35192041 35192210 -66188311 - MLT1L LTR MaLR -7 608 423 321 164 18 0 chr15 35192375 35192430 -66188091 - MLT1L LTR MaLR -392 223 168 2001 135 0 3 chr15 35192732 35193014 -66187507 + AluSx SINE Alu 3 283 -29 252 0 0 0 chr15 35194746 35194774 -66185747 + (CA)n Simple_repeat Simple_repeat 2 29 0 310 300 149 78 chr15 35196099 35196522 -66183999 + L1M2 LINE L1 443 895 -5954 261 0 0 0 chr15 35196773 35196802 -66183719 + (TC)n Simple_repeat Simple_repeat 1 29 0 739 204 126 0 chr15 35197981 35198148 -66182373 - MER5A DNA MER1_type 0 189 2 228 122 0 0 chr15 35201346 35201387 -66179134 + (CA)n Simple_repeat Simple_repeat 1 41 0 1459 106 89 8 chr15 35202128 35202365 -66178156 + L1MA9 LINE L1 6055 6310 -2 648 251 123 17 chr15 35202724 35202959 -66177562 + MIR SINE MIR 1 260 -2 729 235 96 62 chr15 35211254 35211487 -66169034 + L1ME4a LINE L1 5584 5838 -283 2090 93 50 0 chr15 35211487 35211766 -66168755 + AluSc SINE Alu 1 293 -16 729 235 96 62 chr15 35211766 35211937 -66168584 + L1ME4a LINE L1 5838 6002 -119 38 22 0 0 chr15 35211992 35212037 -66168484 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr15 35212322 35212354 -66168167 + AT_rich Low_complexity Low_complexity 1 32 0 976 200 0 0 chr15 35213213 35213388 -66167133 + FRAM SINE Alu 1 175 -1 21 0 0 0 chr15 35213909 35213930 -66166591 + AT_rich Low_complexity Low_complexity 1 21 0 1883 125 0 32 chr15 35215062 35215343 -66165178 - AluSx SINE Alu -13 299 28 1144 267 59 53 chr15 35215672 35216421 -66164100 - L1ME3A LINE L1 -287 5883 5131 231 233 0 33 chr15 35216903 35216963 -66163558 - MIR3 SINE MIR -136 72 15 205 255 0 0 chr15 35217375 35217422 -66163099 - L2 LINE L2 0 3313 3267 520 322 141 47 chr15 35217497 35218153 -66162368 + L2 LINE L2 2541 3267 -5 395 288 44 28 chr15 35218863 35219181 -66161340 + L2 LINE L2 1153 1558 -1756 306 141 62 47 chr15 35219297 35219361 -66161160 + L2 LINE L2 3180 3244 -69 316 350 43 34 chr15 35222295 35222529 -66157992 + MIR SINE MIR 13 248 -14 301 274 171 14 chr15 35222885 35223031 -66157490 - MIR SINE MIR -83 179 11 1655 180 0 14 chr15 35223547 35223842 -66156679 - AluJo SINE Alu -21 291 1 309 234 39 16 chr15 35224139 35224267 -66156254 + L1M4 LINE L1 3862 3992 -2154 2575 57 0 0 chr15 35224282 35224580 -66155941 - AluY SINE Alu -13 298 1 518 250 123 37 chr15 35224581 35224825 -66155696 + L1M4 LINE L1 4579 4843 -1303 270 229 86 38 chr15 35224833 35224938 -66155583 + L1P LINE L1 4903 5012 -1134 27 0 0 0 chr15 35226762 35226789 -66153732 + AT_rich Low_complexity Low_complexity 1 27 0 219 36 0 0 chr15 35227922 35227950 -66152571 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1964 134 3 11 chr15 35227955 35228239 -66152282 - AluSx SINE Alu -30 282 1 24 0 0 0 chr15 35229270 35229294 -66151227 + AT_rich Low_complexity Low_complexity 1 24 0 3071 154 41 19 chr15 35229384 35229461 -66151060 - L1MB7 LINE L1 0 6184 6110 2494 61 0 0 chr15 35229461 35229756 -66150765 - AluY SINE Alu -16 295 1 3071 154 41 19 chr15 35229756 35230242 -66150279 - L1MB7 LINE L1 -74 6110 5609 21 36 0 0 chr15 35230387 35230415 -66150106 + AT_rich Low_complexity Low_complexity 1 28 0 215 270 80 30 chr15 35230420 35230520 -66150001 + L2 LINE L2 3209 3313 0 22 0 0 0 chr15 35230596 35230618 -66149903 + AT_rich Low_complexity Low_complexity 1 22 0 610 269 66 6 chr15 35231523 35231705 -66148816 - MIR SINE MIR -51 211 19 236 312 36 5 chr15 35232523 35232620 -66147901 - MIR SINE MIR -66 142 46 219 69 0 0 chr15 35232664 35232693 -66147828 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 6006 124 53 16 chr15 35233706 35234277 -66146244 + Tigger3b DNA MER2_type 5 554 -2474 2185 125 22 33 chr15 35234277 35234645 -66145876 - THE1B LTR MaLR 0 364 1 6006 124 53 16 chr15 35234645 35234981 -66145540 + Tigger3b DNA MER2_type 554 961 -2067 1889 181 0 10 chr15 35234981 35235295 -66145226 - AluJb SINE Alu -1 311 1 6006 124 53 16 chr15 35235295 35235484 -66145037 + Tigger3b DNA MER2_type 961 1142 -89 201 214 0 71 chr15 35236036 35236092 -66144429 - L3 LINE CR1 -20 1557 1506 188 359 0 0 chr15 35236082 35236146 -66144375 - MIR SINE MIR -107 101 38 * 533 219 138 0 chr15 35236573 35236696 -66143825 - MIR SINE MIR -44 218 79 521 238 20 0 chr15 35237921 35238072 -66142449 - MER103 DNA DNA -2 164 11 223 271 0 0 chr15 35238251 35238299 -66142222 + L2 LINE L2 3217 3264 -8 376 237 41 21 chr15 35239679 35239776 -66140745 - MER5B DNA MER1_type 0 178 80 1747 24 0 0 chr15 35240008 35240216 -66140305 - L1PA2 LINE L1 -2 6153 5946 2566 164 30 77 chr15 35240806 35241466 -66139055 - L1MA9 LINE L1 -35 6277 5649 1470 162 0 74 chr15 35241467 35241764 -66138757 - AluJo SINE Alu -15 297 23 5266 196 106 30 chr15 35241777 35242959 -66137562 - MER52C LTR ERV1 0 1278 7 1551 151 7 0 chr15 35242964 35243236 -66137285 - L1MA9 LINE L1 -698 5614 5341 22 0 0 0 chr15 35245895 35245917 -66134604 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr15 35246293 35246322 -66134199 + AT_rich Low_complexity Low_complexity 1 29 0 2494 120 20 39 chr15 35247190 35247632 -66132889 + MER57B LTR ERV1 1 434 0 198 284 54 14 chr15 35247675 35247749 -66132772 + MIR3 SINE MIR 85 161 -47 468 341 8 0 chr15 35248175 35248301 -66132220 - L2 LINE L2 0 3272 3146 327 150 0 0 chr15 35249368 35249428 -66131093 + (CA)n Simple_repeat Simple_repeat 1 60 0 349 211 46 72 chr15 35250835 35250987 -66129534 + LTR67 LTR ERVL 408 555 -2 657 334 52 54 chr15 35251758 35252709 -66127812 + ERVL LTR ERVL 890 1838 -3926 425 303 71 34 chr15 35252821 35252877 -66127644 + ERVL LTR ERVL 2527 2579 -3185 2341 88 0 3 chr15 35252877 35253171 -66127350 - AluSc SINE Alu -16 293 1 425 303 71 34 chr15 35253171 35253381 -66127140 + ERVL LTR ERVL 2579 2803 -2961 1770 266 53 2 chr15 35253706 35254254 -66126267 - L2 LINE L2 -1308 2006 1431 2210 105 10 0 chr15 35254837 35255131 -66125390 + AluSc SINE Alu 1 297 -12 958 291 23 12 chr15 35256040 35256298 -66124223 - MIR SINE MIR 0 262 2 1768 138 98 20 chr15 35259994 35260341 -66120180 + THE1C LTR MaLR 2 375 0 412 333 0 26 chr15 35262234 35262390 -66118131 + MIR SINE MIR 35 186 -76 309 287 47 31 chr15 35264108 35264237 -66116284 - MIR SINE MIR -58 204 74 301 291 71 16 chr15 35264553 35264680 -66115841 + L2 LINE L2 3137 3270 -2 1948 141 7 10 chr15 35265700 35266005 -66114516 - AluJb SINE Alu -7 305 2 1636 111 0 25 chr15 35266040 35266283 -66114238 + AluSc SINE Alu 1 237 -72 435 239 51 67 chr15 35269945 35270200 -66110321 + HAL1 LINE L1 1850 2100 -407 * 602 274 118 18 chr15 35270186 35270577 -66109944 + HAL1 LINE L1 1998 2427 -80 37 91 0 14 chr15 35270595 35270686 -66109835 + AT_rich Low_complexity Low_complexity 1 91 -50 1932 140 31 0 chr15 35270686 35270847 -66109674 - AluSx SINE Alu -17 295 120 183 42 0 0 chr15 35270847 35270871 -66109650 + (TA)n Simple_repeat Simple_repeat 2 25 0 1932 140 31 0 chr15 35270871 35270995 -66109526 - AluSx SINE Alu -192 120 1 37 91 0 14 chr15 35270995 35271046 -66109475 + AT_rich Low_complexity Low_complexity 91 141 0 461 174 6 126 chr15 35271077 35271244 -66109277 - MER69 DNA AcHobo 0 2526 2380 296 180 33 0 chr15 35271359 35271420 -66109101 - MER69 DNA AcHobo -2463 63 1 243 229 195 42 chr15 35271499 35271617 -66108904 + MIR3 SINE MIR 1 136 -72 5114 162 30 14 chr15 35271739 35272820 -66107701 - L1 LINE L1 -1758 5807 4709 241 219 124 7 chr15 35273047 35273184 -66107337 - L1ME LINE L1 -227 5894 5742 4435 234 36 36 chr15 35273287 35274620 -66105901 - L1 LINE L1 -2865 4700 3369 749 194 0 15 chr15 35274620 35274754 -66105767 + FLAM_A SINE Alu 1 132 -1 4435 234 36 36 chr15 35274754 35275396 -66105125 - L1 LINE L1 -4196 3369 2713 1937 127 51 0 chr15 35275396 35275671 -66104850 - AluSg SINE Alu -21 289 1 4435 234 36 36 chr15 35275671 35275930 -66104591 - L1 LINE L1 -4852 2713 2456 865 287 31 82 chr15 35275927 35276377 -66104144 - L1 LINE L1 -5000 2496 2070 * 1355 256 60 62 chr15 35276716 35277350 -66103171 - L1 LINE L1 -5640 1856 1224 22 0 0 0 chr15 35277991 35278013 -66102508 + AT_rich Low_complexity Low_complexity 1 22 0 1522 129 61 0 chr15 35279455 35279734 -66100787 + L1MA5 LINE L1 6000 6295 -5 521 231 19 0 chr15 35279809 35279917 -66100604 - MER81 DNA DNA -4 110 1 544 264 62 62 chr15 35280058 35280266 -66100255 + MIR SINE MIR 7 214 -48 441 199 215 27 chr15 35280316 35280502 -66100019 + MER102a DNA MER1_type 100 320 -10 234 250 217 33 chr15 35280548 35280668 -66099853 + MER5A DNA MER1_type 48 189 0 360 195 136 160 chr15 35281782 35281840 -66098681 + MER5A DNA MER1_type 19 77 -112 2037 98 4 0 chr15 35281840 35282105 -66098416 + AluSp SINE Alu 1 266 -47 360 195 136 160 chr15 35282105 35282215 -66098306 + MER5A DNA MER1_type 77 183 -6 485 262 16 86 chr15 35282622 35282809 -66097712 + MER5B DNA MER1_type 1 174 -4 203 204 37 19 chr15 35282816 35282870 -66097651 + (TCCA)n Simple_repeat Simple_repeat 2 56 0 887 219 73 10 chr15 35282922 35283127 -66097394 - MER20 DNA MER1_type -1 218 1 787 234 186 53 chr15 35283627 35284024 -66096497 - MLT1D LTR MaLR -44 582 12 3020 159 51 12 chr15 35284034 35284639 -66095882 - L1MB8 LINE L1 -38 6140 5512 21 0 0 0 chr15 35289543 35289564 -66090957 + AT_rich Low_complexity Low_complexity 1 21 0 258 95 0 0 chr15 35289697 35289739 -66090782 + (T)n Simple_repeat Simple_repeat 1 42 0 258 288 182 35 chr15 35290519 35290717 -66089804 + L3b LINE CR1 1217 1443 -140 1497 99 5 19 chr15 35291356 35291567 -66088954 - AluSg/x SINE Alu -9 303 96 218 105 26 0 chr15 35291965 35292003 -66088518 + CT-rich Low_complexity Low_complexity 1 39 0 1857 228 30 52 chr15 35292132 35292826 -66087695 + L1ME4a LINE L1 4118 4796 -1350 28 0 0 0 chr15 35292853 35292881 -66087640 + AT_rich Low_complexity Low_complexity 1 28 0 188 282 167 13 chr15 35292968 35293046 -66087475 + L2 LINE L2 3182 3271 -1 22 0 0 0 chr15 35293164 35293186 -66087335 + AT_rich Low_complexity Low_complexity 1 22 0 757 203 139 25 chr15 35293354 35293556 -66086965 - MIR SINE MIR -3 259 35 2379 95 3 19 chr15 35295719 35296035 -66084486 - AluSq SINE Alu -2 311 1 267 399 68 7 chr15 35296190 35296338 -66084183 + L2 LINE L2 3116 3272 0 2307 130 3 14 chr15 35296798 35297168 -66083353 - MER47A DNA MER2_type 0 366 1 2451 231 31 9 chr15 35297607 35298178 -66082343 - MER21B LTR ERV1 -261 602 19 483 185 0 22 chr15 35298200 35298292 -66082229 - MER21B LTR ERV1 -773 90 1 357 345 144 14 chr15 35298626 35298936 -66081585 - L2 LINE L2 -292 2980 2629 270 367 41 0 chr15 35299987 35300085 -66080436 - MER91A DNA MER1_type -66 130 29 180 0 0 0 chr15 35300456 35300476 -66080045 + (TAGA)n Simple_repeat Simple_repeat 1 20 0 259 85 43 0 chr15 35301327 35301374 -66079147 + GA-rich Low_complexity Low_complexity 3 51 0 289 230 40 70 chr15 35302376 35302476 -66078045 + MIR SINE MIR 92 188 -74 804 151 0 23 chr15 35302493 35302665 -66077856 + L1MA7 LINE L1 6124 6291 0 2112 113 40 0 chr15 35303100 35303401 -66077120 + AluSq SINE Alu 1 313 0 397 280 129 22 chr15 35304843 35305207 -66075314 + L1ME4a LINE L1 5265 5667 -454 250 146 36 0 chr15 35305304 35305359 -66075162 + L1ME4a LINE L1 5860 5916 -205 201 98 39 39 chr15 35305384 35305435 -66075086 + GA-rich Low_complexity Low_complexity 4 54 0 525 16 0 0 chr15 35305447 35305509 -66075012 + (TG)n Simple_repeat Simple_repeat 2 63 0 189 0 0 0 chr15 35305830 35305851 -66074670 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 1032 182 98 42 chr15 35306640 35306947 -66073574 + MER33 DNA MER1_type 1 324 0 309 272 130 54 chr15 35307601 35307785 -66072736 - MLT1J LTR MaLR -202 309 112 281 355 40 7 chr15 35308723 35308875 -66071646 + L2 LINE L2 2894 3050 -222 1895 164 0 0 chr15 35309455 35309741 -66070780 + AluJo SINE Alu 5 290 -22 704 305 79 58 chr15 35310198 35311109 -66069412 - L1MEd LINE L1 -5187 932 3 38 61 0 0 chr15 35311287 35311353 -66069168 + AT_rich Low_complexity Low_complexity 1 66 0 2292 104 3 0 chr15 35311564 35311863 -66068658 - AluSp SINE Alu -13 300 1 1115 63 6 19 chr15 35312184 35312342 -66068179 + L1PA8 LINE L1 6017 6172 0 194 326 130 0 chr15 35313176 35313268 -66067253 + MIR3 SINE MIR 98 201 -7 2323 110 0 0 chr15 35314296 35314595 -66065926 + AluSx SINE Alu 4 302 -10 359 332 35 62 chr15 35314760 35315049 -66065472 - L1ME LINE L1 -458 5663 5383 335 250 50 10 chr15 35315158 35315258 -66065263 - L1ME4a LINE L1 -1 6120 6017 314 268 68 63 chr15 35315350 35315555 -66064966 - L1MC4a LINE L1 -1842 5966 5761 1298 141 163 103 chr15 35317009 35317329 -66063192 - Charlie3 DNA MER1_type 0 2712 1 329 313 11 0 chr15 35317334 35317417 -66063104 - MIR SINE MIR -104 104 23 367 165 0 6 chr15 35317581 35317840 -66062681 + AluJo SINE Alu 1 300 0 798 276 20 0 chr15 35318085 35318281 -66062240 + MIR SINE MIR 53 252 -10 1844 176 31 14 chr15 35318491 35318850 -66061671 - MLT1A1 LTR MaLR 0 365 1 2227 102 3 16 chr15 35319054 35319367 -66061154 - AluSx SINE Alu -3 309 1 23 54 0 0 chr15 35320448 35320485 -66060036 + AT_rich Low_complexity Low_complexity 1 37 0 786 144 0 0 chr15 35320665 35320783 -66059738 + FLAM_C SINE Alu 1 118 -15 21 36 0 0 chr15 35320783 35320811 -66059710 + AT_rich Low_complexity Low_complexity 1 28 0 397 230 103 32 chr15 35321197 35321323 -66059198 + MIR3 SINE MIR 15 149 -59 412 276 9 20 chr15 35321373 35321509 -66059012 + MIR SINE MIR 21 157 -67 245 333 0 10 chr15 35321960 35322059 -66058462 - MER5A DNA MER1_type 0 189 92 1799 160 13 26 chr15 35322067 35322374 -66058147 + AluJb SINE Alu 1 303 -9 182 322 58 23 chr15 35322425 35322512 -66058009 + L2 LINE L2 2602 2691 -623 257 346 39 31 chr15 35323009 35323033 -66057488 + L3 LINE CR1 1434 1456 -121 2822 101 24 14 chr15 35323033 35323457 -66057064 + MSTA LTR MaLR 1 428 0 257 346 39 31 chr15 35323457 35323559 -66056962 + L3 LINE CR1 1456 1561 -16 21 36 0 0 chr15 35323642 35323670 -66056851 + AT_rich Low_complexity Low_complexity 1 28 0 1744 190 54 63 chr15 35323721 35324194 -66056327 + L1ME4a LINE L1 5122 5599 -565 2445 74 3 0 chr15 35324194 35324491 -66056030 - AluSc SINE Alu -6 303 6 1744 190 54 63 chr15 35324491 35324674 -66055847 + L1ME4a LINE L1 5599 5782 -382 341 261 90 30 chr15 35324711 35324845 -66055676 + LTR33 LTR ERVL 106 247 -274 235 301 98 15 chr15 35325454 35325587 -66054934 + LTR33 LTR ERVL 371 514 -7 221 102 41 0 chr15 35325587 35325636 -66054885 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 227 208 78 0 chr15 35325649 35325726 -66054795 + L1MC4 LINE L1 6620 6702 -1340 * 287 179 140 112 chr15 35325698 35325877 -66054644 + L1ME4a LINE L1 5935 6118 -3 1796 132 14 34 chr15 35325879 35326174 -66054347 - AluJb SINE Alu -14 298 10 264 289 92 13 chr15 35326268 35326344 -66054177 + MIR SINE MIR 50 131 -77 643 269 26 118 chr15 35329024 35329347 -66051174 - MER102b DNA MER1_type -1109 319 29 3223 144 31 8 chr15 35329347 35329862 -66050659 + MER1A DNA MER1_type 1 527 0 643 269 26 118 chr15 35329862 35329887 -66050634 - MER102b DNA MER1_type -1399 29 3 1538 165 7 15 chr15 35330061 35330334 -66050187 + AluJo SINE Alu 27 297 -15 449 261 81 31 chr15 35330455 35330616 -66049905 - MIR SINE MIR -41 221 53 2351 79 0 3 chr15 35330625 35330915 -66049606 - AluY SINE Alu -22 289 1 2428 67 3 3 chr15 35331642 35331939 -66048582 - AluY SINE Alu -14 297 1 2240 99 3 0 chr15 35332338 35332630 -66047891 + AluSc SINE Alu 1 293 -16 2219 113 0 23 chr15 35333173 35333475 -66047046 - AluSx SINE Alu -14 298 4 314 61 20 0 chr15 35334224 35334273 -66046248 + (CA)n Simple_repeat Simple_repeat 1 50 0 293 300 176 43 chr15 35334633 35334843 -66045678 - L2 LINE L2 -3 3269 3032 270 323 153 46 chr15 35334816 35335098 -66045423 - L2 LINE L2 -545 2769 2458 * 6101 181 42 19 chr15 35335111 35336676 -66043845 + L1PA15 LINE L1 4079 5708 -457 1662 213 0 7 chr15 35336676 35336977 -66043544 + AluJb SINE Alu 1 299 -13 6101 181 42 19 chr15 35336977 35337432 -66043089 + L1PA15 LINE L1 5708 6151 -14 445 311 39 64 chr15 35337533 35337816 -66042705 - L2 LINE L2 -889 2425 2150 431 262 21 35 chr15 35338288 35338433 -66042088 + LTR67 LTR ERVL 413 555 -2 231 287 35 23 chr15 35338972 35339059 -66041462 + LTR67 LTR ERVL 13 100 -457 2029 129 0 50 chr15 35339297 35339639 -66040882 - MER1B DNA MER1_type 0 339 15 2283 109 3 0 chr15 35339679 35339983 -66040538 + AluSq SINE Alu 1 305 -8 1902 125 39 0 chr15 35340499 35340779 -66039742 - AluSx SINE Alu -21 291 1 264 322 33 25 chr15 35341184 35341305 -66039216 + MLT1J LTR MaLR 232 353 -158 268 224 194 20 chr15 35341308 35341406 -66039115 + MLT1L LTR MaLR 500 614 -1 296 263 105 48 chr15 35341407 35341616 -66038905 + HAL1 LINE L1 1239 1459 -1048 5308 129 32 11 chr15 35342620 35343531 -66036990 - Tigger3b DNA MER2_type 0 1231 302 720 132 57 0 chr15 35343535 35343641 -66036880 - Tigger3b DNA MER2_type -1118 113 2 384 260 101 43 chr15 35343869 35344077 -66036444 + Charlie8 DNA MER1_type 38 257 -2160 806 244 50 9 chr15 35344141 35344362 -66036159 - LTR16A1 LTR ERVL -15 442 213 346 191 103 56 chr15 35344390 35344516 -66036005 - LTR16A1 LTR ERVL -325 132 1 * 382 284 31 16 chr15 35344516 35344640 -66035881 + Charlie8 DNA MER1_type 367 492 -1925 2011 82 0 7 chr15 35345121 35345400 -66035121 - L1PA13 LINE L1 -7 6156 5880 23 33 0 0 chr15 35345476 35345506 -66035015 + AT_rich Low_complexity Low_complexity 1 30 0 325 283 90 6 chr15 35346820 35346986 -66033535 - MER112 DNA MER1_type 0 260 81 21 0 0 0 chr15 35347573 35347594 -66032927 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr15 35348091 35348120 -66032401 + AT_rich Low_complexity Low_complexity 1 29 0 267 155 0 69 chr15 35350655 35350713 -66029808 - MER83 LTR ERV1 -2 446 393 2265 199 253 16 chr15 35350949 35351684 -66028837 + L1MC4 LINE L1 7132 7985 -10 228 100 0 0 chr15 35352176 35352216 -66028305 + (TCTG)n Simple_repeat Simple_repeat 2 41 0 306 0 0 0 chr15 35352226 35352260 -66028261 + (CA)n Simple_repeat Simple_repeat 1 34 0 3112 168 39 19 chr15 35352705 35353254 -66027267 - MER6A DNA MER2_type -261 604 41 1604 169 29 16 chr15 35353254 35353562 -66026959 + AluJo SINE Alu 1 312 0 3112 168 39 19 chr15 35353562 35353600 -66026921 - MER6A DNA MER2_type -824 41 5 515 153 10 0 chr15 35354448 35354546 -66025975 + CT-rich Low_complexity Low_complexity 3 101 0 349 337 30 15 chr15 35354879 35355081 -66025440 - HAL1b LINE L1 -625 723 519 288 193 81 131 chr15 35355879 35356053 -66024468 - MER20B DNA MER1_type -17 202 33 10571 184 33 23 chr15 35356108 35358866 -66021655 + L1MA9 LINE L1 2981 5774 -538 333 0 0 0 chr15 35358866 35358903 -66021618 + (CA)n Simple_repeat Simple_repeat 2 38 0 10571 184 33 23 chr15 35358903 35359410 -66021111 + L1MA9 LINE L1 5774 6274 -38 1069 215 61 0 chr15 35359548 35359795 -66020726 - L1P LINE L1 -987 5159 4898 * 3173 170 66 5 chr15 35359778 35360384 -66020137 + L1MC3 LINE L1 7133 7775 -10 243 271 71 45 chr15 35360660 35360815 -66019706 + L1ME4a LINE L1 3523 3681 -2465 478 342 60 7 chr15 35360885 35361154 -66019367 + L1ME4a LINE L1 3693 3975 -2171 24 32 0 0 chr15 35361228 35361259 -66019262 + AT_rich Low_complexity Low_complexity 1 31 0 1788 188 62 3 chr15 35361549 35361889 -66018632 + MLT1F1 LTR MaLR 208 567 0 1123 211 153 0 chr15 35363822 35364083 -66016438 - AluJo SINE Alu -1 301 1 27 49 0 0 chr15 35364655 35364696 -66015825 + AT_rich Low_complexity Low_complexity 1 41 0 425 300 64 19 chr15 35366231 35366498 -66014023 + L1ME4a LINE L1 4735 5013 -1133 1264 190 212 37 chr15 35367030 35367435 -66013086 - MLT1D LTR MaLR -8 497 22 445 234 7 43 chr15 35367491 35367632 -66012889 + L1ME4a LINE L1 5691 5826 -295 290 115 39 19 chr15 35367641 35367693 -66012828 - MLT1G LTR MaLR 0 590 538 3162 196 32 7 chr15 35367695 35368379 -66012142 + L1MC4a LINE L1 7108 7808 0 5131 154 25 10 chr15 35368383 35369309 -66011212 + L1MA7 LINE L1 5352 6291 0 602 214 18 48 chr15 35369315 35369483 -66011038 - MLT1G LTR MaLR -39 551 389 1145 183 195 53 chr15 35369585 35369979 -66010542 - MLT1C LTR MaLR 0 467 18 692 262 59 142 chr15 35369991 35370281 -66010240 - MLT1G LTR MaLR -266 301 39 240 301 35 44 chr15 35370347 35370576 -66009945 + L1ME4a LINE L1 5839 6065 -56 1954 133 16 16 chr15 35372682 35372991 -66007530 - AluJo SINE Alu -3 309 1 312 292 115 8 chr15 35373300 35373430 -66007091 - MIR SINE MIR 0 262 119 754 221 64 60 chr15 35373831 35374080 -66006441 - MIR SINE MIR 0 262 13 1642 166 7 42 chr15 35374281 35374588 -66005933 - AluJo SINE Alu -8 304 9 3728 163 28 45 chr15 35374872 35375671 -66004850 + LTR1 LTR ERV1 1 785 0 5710 182 75 34 chr15 35375752 35376445 -66004076 - Charlie1a DNA MER1_type -1309 1452 789 2765 13 0 0 chr15 35376445 35376747 -66003774 + AluY SINE Alu 1 302 -9 5710 182 75 34 chr15 35376747 35377446 -66003075 - Charlie1a DNA MER1_type -1972 789 2 430 187 0 0 chr15 35378390 35378465 -66002056 + MER33 DNA MER1_type 8 82 -242 198 231 256 34 chr15 35379025 35379142 -66001379 - MIR SINE MIR 0 262 120 2028 119 3 7 chr15 35379756 35380042 -66000479 - AluJb SINE Alu -27 285 1 2276 95 0 0 chr15 35380044 35380338 -66000183 - AluSx SINE Alu -18 294 1 267 95 0 24 chr15 35381083 35381125 -65999396 + FLAM SINE Alu 86 126 -7 1226 229 32 38 chr15 35381129 35381470 -65999051 + L1ME1 LINE L1 5810 6148 -18 455 303 35 42 chr15 35381505 35381648 -65998873 + L1ME1 LINE L1 4510 4652 -1494 1950 138 28 0 chr15 35381648 35381937 -65998584 + AluSx SINE Alu 1 297 -15 455 303 35 42 chr15 35381937 35382077 -65998444 + L1ME1 LINE L1 4652 4791 -1355 225 297 66 0 chr15 35382104 35382195 -65998326 + LTR67 LTR ERVL 124 220 -337 1241 160 0 5 chr15 35382484 35382678 -65997843 - AluJo SINE Alu -33 279 87 1521 134 150 13 chr15 35382995 35383351 -65997170 + MSTA LTR MaLR 1 428 0 491 112 0 37 chr15 35383568 35383675 -65996846 + (GGGA)n Simple_repeat Simple_repeat 2 104 0 1903 93 0 30 chr15 35384380 35384650 -65995871 - AluSx SINE Alu -15 297 36 238 292 298 18 chr15 35384805 35384973 -65995548 - L3 LINE CR1 -226 1351 1137 22 0 0 0 chr15 35385868 35385890 -65994631 + AT_rich Low_complexity Low_complexity 1 22 0 298 208 96 24 chr15 35386027 35386152 -65994369 + HAL1 LINE L1 2060 2193 -314 22 70 0 0 chr15 35386270 35386313 -65994208 + AT_rich Low_complexity Low_complexity 1 43 0 450 283 59 87 chr15 35386347 35386704 -65993817 + L1ME4a LINE L1 5032 5378 -768 234 292 42 42 chr15 35386741 35386861 -65993660 + L1ME4a LINE L1 5956 6075 -46 231 201 76 83 chr15 35386878 35387022 -65993499 - L1ME4a LINE L1 -12 6109 5967 2357 54 17 7 chr15 35387693 35387988 -65992533 + AluY SINE Alu 1 298 -13 246 175 18 0 chr15 35388131 35388188 -65992333 + L1ME1 LINE L1 4981 5038 -1108 957 108 8 0 chr15 35388210 35388339 -65992182 - AluSq/x SINE Alu -183 130 1 3505 201 80 20 chr15 35388339 35389430 -65991091 + L1ME1 LINE L1 5023 6158 -8 452 269 154 50 chr15 35389492 35389771 -65990750 - L1ME4a LINE L1 -2177 5631 5324 390 284 125 11 chr15 35390450 35390626 -65989895 + MIR SINE MIR 16 211 -51 1284 237 103 13 chr15 35390994 35391458 -65989063 + L2 LINE L2 2201 2896 -417 327 123 123 0 chr15 35391662 35391727 -65988794 + MLT1K LTR MaLR 514 586 -2 1223 118 0 17 chr15 35392194 35392372 -65988149 - AluSg/x SINE Alu -1 311 137 810 286 165 16 chr15 35393007 35393370 -65987151 + L2 LINE L2 2896 3312 -1 2061 138 47 89 chr15 35394137 35394376 -65986145 - L1MD1 LINE L1 0 6242 6004 472 294 73 25 chr15 35394376 35394607 -65985914 - L1MB5 LINE L1 -145 6029 5784 1323 171 120 47 chr15 35394607 35394881 -65985640 - AluJb SINE Alu -8 294 1 472 294 73 25 chr15 35394881 35394894 -65985627 - L1MB5 LINE L1 -390 5784 5773 4505 85 4 2 chr15 35395869 35396422 -65984099 + MER41A LTR ERV1 1 554 0 1730 140 189 0 chr15 35396969 35397276 -65983245 - MER47A DNA MER2_type 0 366 2 364 303 99 1 chr15 35398003 35398114 -65982407 - MER5A DNA MER1_type 0 189 55 2004 140 0 32 chr15 35398114 35398422 -65982099 - AluSx SINE Alu -14 298 1 364 303 99 1 chr15 35398422 35398433 -65982088 - MER5A DNA MER1_type -134 55 46 1839 100 115 0 chr15 35398603 35398872 -65981649 - AluSq SINE Alu -13 300 1 333 310 0 0 chr15 35399708 35399795 -65980726 - LTR67 LTR ERVL -61 496 410 233 290 14 0 chr15 35400010 35400079 -65980442 - LTR67 LTR ERVL -377 180 111 435 347 23 32 chr15 35400238 35400454 -65980067 + MLT1K LTR MaLR 127 340 -248 2817 197 70 8 chr15 35400679 35401289 -65979232 - MER99 DNA DNA -179 649 2 313 263 88 44 chr15 35401328 35401488 -65979033 + L2 LINE L2 2957 3123 -190 295 270 45 11 chr15 35401517 35401606 -65978915 + MIR3 SINE MIR 67 158 -50 239 293 0 61 chr15 35401616 35401698 -65978823 + MER5B DNA MER1_type 15 91 -87 335 306 160 0 chr15 35401704 35401848 -65978673 - MER5A DNA MER1_type -6 183 17 394 282 99 11 chr15 35402948 35403129 -65977392 - MIR SINE MIR -44 218 22 1337 150 4 39 chr15 35403642 35403876 -65976645 - AluJb SINE Alu 0 312 87 380 319 98 12 chr15 35403995 35404158 -65976363 - MER5A DNA MER1_type -4 185 9 213 39 0 0 chr15 35404579 35404605 -65975916 + (CA)n Simple_repeat Simple_repeat 1 26 0 1054 132 70 9 chr15 35405240 35405445 -65975076 - LTR47A LTR ERVL -8 444 234 427 289 53 7 chr15 35406165 35406317 -65974204 + MIR3 SINE MIR 49 207 -1 219 181 111 83 chr15 35406598 35406670 -65973851 + MIR3 SINE MIR 95 168 -40 2552 45 3 3 chr15 35407057 35407366 -65973155 + AluY SINE Alu 1 309 -2 2588 36 3 3 chr15 35407742 35408047 -65972474 + AluY SINE Alu 1 305 -6 1965 90 30 0 chr15 35408060 35408327 -65972194 + L1PA12 LINE L1 5894 6168 0 233 259 35 0 chr15 35408366 35408424 -65972097 + MIR SINE MIR 91 150 -58 618 116 5 3 chr15 35408772 35408992 -65971529 + AluJo SINE Alu 1 277 -35 687 207 21 52 chr15 35409024 35409217 -65971304 - HAL1 LINE L1 -1501 1006 820 262 297 30 11 chr15 35409588 35409692 -65970829 + MIR SINE MIR 60 162 -56 302 258 38 82 chr15 35410467 35410626 -65969895 - HAL1 LINE L1 -112 2395 2244 201 147 0 0 chr15 35411026 35411060 -65969461 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 649 179 30 167 chr15 35411073 35411307 -65969214 - HAL1 LINE L1 -2302 205 4 320 291 118 9 chr15 35411513 35411710 -65968811 - MLT1K LTR MaLR -10 605 366 888 154 26 26 chr15 35412583 35412739 -65967782 - MER20 DNA MER1_type 0 219 64 188 197 16 98 chr15 35413693 35413754 -65966767 + L2 LINE L2 1238 1293 -2021 239 250 125 0 chr15 35414546 35414626 -65965895 - MIR SINE MIR -8 254 165 484 302 65 31 chr15 35414632 35414923 -65965598 - LTR16C LTR ERVL -9 482 182 649 257 13 13 chr15 35415035 35415187 -65965334 - MIR SINE MIR -103 159 8 2411 99 0 3 chr15 35419774 35420087 -65960434 - AluSx SINE Alu 0 312 1 232 294 35 12 chr15 35420093 35420178 -65960343 - L2 LINE L2 -12 3301 3215 250 309 53 49 chr15 35421114 35421379 -65959142 + L1PB2 LINE L1 5663 5928 -223 * 2153 184 30 26 chr15 35421149 35421615 -65958906 + L1MB7 LINE L1 5698 6165 -19 480 302 84 50 chr15 35421841 35422139 -65958382 + MER102b DNA MER1_type 1 308 -33 437 263 17 8 chr15 35422345 35422463 -65958058 - MIR SINE MIR -134 128 10 29 0 0 0 chr15 35423783 35423812 -65956709 + AT_rich Low_complexity Low_complexity 1 29 0 239 204 0 0 chr15 35424090 35424134 -65956387 + L2 LINE L2 1879 1922 -1392 1406 156 82 27 chr15 35424136 35424441 -65956080 - MER33 DNA MER1_type -10 314 1 443 295 113 17 chr15 35424443 35424745 -65955776 + L2 LINE L2 1959 2289 -1025 1139 294 123 20 chr15 35424768 35425247 -65955274 + L2 LINE L2 2780 3313 0 198 103 0 0 chr15 35425886 35425915 -65954606 + (TG)n Simple_repeat Simple_repeat 2 30 0 1062 56 6 81 chr15 35426326 35426371 -65954150 + L1PA12 LINE L1 6021 6068 -100 2437 55 17 0 chr15 35426371 35426663 -65953858 + AluY SINE Alu 1 297 -14 1062 56 6 81 chr15 35426663 35426777 -65953744 + L1PA12 LINE L1 6068 6168 0 873 157 19 127 chr15 35427563 35427709 -65952812 - L1MEc LINE L1 -4011 2710 2604 757 230 0 0 chr15 35427709 35427835 -65952686 - FLAM_A SINE Alu -7 126 1 873 157 19 127 chr15 35427835 35427956 -65952565 - L1MEc LINE L1 -4117 2604 2472 1501 134 4 42 chr15 35427957 35428146 -65952375 - MER46A DNA MER2_type -2496 235 55 2524 61 0 0 chr15 35428146 35428440 -65952081 + AluY SINE Alu 5 298 -13 1501 134 4 42 chr15 35428440 35428489 -65952032 - MER46A DNA MER2_type -2676 55 6 643 204 58 6 chr15 35428494 35428666 -65951855 - L1MEc LINE L1 -4248 2473 2293 2179 149 34 45 chr15 35428666 35429220 -65951301 + MLT2A2 LTR ERVL 1 554 0 1875 144 31 7 chr15 35429249 35429540 -65950981 - AluJb SINE Alu -12 300 3 318 145 32 0 chr15 35429551 35429613 -65950908 - L1MEc LINE L1 -3935 2605 2542 1556 283 29 15 chr15 35429613 35430140 -65950381 - L1MEc LINE L1 -4462 2259 1726 548 263 61 57 chr15 35430217 35430479 -65950042 - L1ME LINE L1 -297 5824 5562 438 296 89 37 chr15 35430635 35431172 -65949349 - L1MEc LINE L1 -4893 1637 1073 773 300 22 45 chr15 35431329 35431596 -65948925 + MIR SINE MIR 2 262 0 4019 148 50 8 chr15 35432205 35432919 -65947602 + L1MA8 LINE L1 5543 6286 -5 1831 154 0 45 chr15 35433280 35433591 -65946930 + AluJo SINE Alu 1 297 -15 183 186 0 0 chr15 35434190 35434233 -65946288 + GA-rich Low_complexity Low_complexity 2 44 0 2158 200 91 2 chr15 35438349 35438809 -65941712 + MLT1F LTR MaLR 10 510 -32 292 314 99 0 chr15 35438836 35438957 -65941564 + MIR SINE MIR 119 251 -11 1195 288 135 35 chr15 35439542 35440236 -65940285 + L2 LINE L2 2020 2783 -531 261 155 69 17 chr15 35440290 35440348 -65940173 - MER91 DNA MER1_type -93 97 37 2483 152 31 7 chr15 35440433 35440847 -65939674 + MSTB LTR MaLR 1 424 -2 458 303 185 29 chr15 35440874 35441188 -65939333 + L2 LINE L2 2946 3308 -5 279 238 74 41 chr15 35441390 35441430 -65939091 - HAL1b LINE L1 0 6048 6011 1807 171 17 7 chr15 35441430 35441723 -65938798 + AluJo SINE Alu 1 296 -16 279 238 74 41 chr15 35441723 35441857 -65938664 - HAL1b LINE L1 -37 6011 1191 34 24 0 0 chr15 35441991 35442032 -65938489 + AT_rich Low_complexity Low_complexity 1 41 0 253 326 0 0 chr15 35442058 35442150 -65938371 - L1MC/D LINE L1 -2009 5799 5708 234 234 47 47 chr15 35442205 35442312 -65938209 - L1MC/D LINE L1 -2256 5552 5446 441 308 124 52 chr15 35443382 35443477 -65937044 + L1ME3 LINE L1 5447 5534 -628 3843 154 79 6 chr15 35443477 35444146 -65936375 - MER72 LTR ERV1 0 722 5 441 308 124 52 chr15 35444146 35444201 -65936320 + L1ME3 LINE L1 5534 5584 -578 454 108 81 0 chr15 35444201 35444275 -65936246 + MADE1 DNA Mariner 1 80 0 441 308 124 52 chr15 35444275 35444509 -65936012 + L1ME3 LINE L1 5584 5860 -302 652 291 44 0 chr15 35445498 35445680 -65934841 - MIR SINE MIR -71 191 2 39 0 0 0 chr15 35446468 35446507 -65934014 + AT_rich Low_complexity Low_complexity 1 39 0 288 326 145 55 chr15 35446734 35447133 -65933388 - L2 LINE L2 -1 3271 2837 805 319 71 48 chr15 35447717 35448460 -65932061 + L2 LINE L2 2062 2821 -493 315 122 0 0 chr15 35448486 35448535 -65931986 + (CA)n Simple_repeat Simple_repeat 1 49 0 2016 112 0 0 chr15 35448556 35448859 -65931662 + L1MB8 LINE L1 5324 5626 -552 1600 202 46 78 chr15 35448859 35449060 -65931461 - MLT1D LTR MaLR 0 505 299 1186 151 122 0 chr15 35449060 35449162 -65931359 + MER30 DNA MER1_type 1 89 -141 333 0 0 0 chr15 35449162 35449199 -65931322 + (CA)n Simple_repeat Simple_repeat 2 38 0 1186 151 122 0 chr15 35449199 35449301 -65931220 + MER30 DNA MER1_type 89 230 0 1600 202 46 78 chr15 35449301 35449599 -65930922 - MLT1D LTR MaLR -206 299 22 2583 176 18 20 chr15 35449641 35450192 -65930329 + L1MB8 LINE L1 5624 6173 -5 261 405 64 0 chr15 35450813 35450986 -65929535 + L3b LINE CR1 1260 1443 -140 3390 99 40 18 chr15 35451021 35451530 -65928991 + L1MA3 LINE L1 5725 6250 -55 2322 91 3 7 chr15 35451530 35451828 -65928693 - AluSp SINE Alu -16 297 1 3390 99 40 18 chr15 35451828 35451886 -65928635 + L1MA3 LINE L1 6250 6305 0 561 260 126 59 chr15 35451932 35452320 -65928201 - MLT1J LTR MaLR -38 473 60 1977 144 3 3 chr15 35452321 35452619 -65927902 + AluSx SINE Alu 1 298 -14 2168 158 89 3 chr15 35452716 35453108 -65927413 + MSTB LTR MaLR 1 426 0 224 179 26 0 chr15 35453328 35453367 -65927154 + L2 LINE L2 3220 3259 -13 221 266 76 51 chr15 35453675 35453833 -65926688 + L2 LINE L2 2690 2851 -463 252 330 17 25 chr15 35453924 35454042 -65926479 + L2 LINE L2 2948 3064 -208 207 194 0 0 chr15 35454110 35454146 -65926375 + (TAG)n Simple_repeat Simple_repeat 2 37 0 365 226 129 0 chr15 35454146 35454239 -65926282 - MIR SINE MIR 0 262 158 303 411 24 0 chr15 35454255 35454379 -65926142 + L2 LINE L2 3134 3260 -12 688 152 14 51 chr15 35454381 35454519 -65926002 + FLAM_C SINE Alu 1 133 0 3875 52 0 0 chr15 35455029 35455534 -65924987 + L1PA5 LINE L1 3827 4331 -1815 7003 66 0 3 chr15 35455536 35457153 -65923368 + L1PA5 LINE L1 4532 6153 -1 298 323 125 8 chr15 35457411 35457557 -65922964 - MIR SINE MIR -76 132 4 199 328 15 0 chr15 35457740 35457807 -65922714 - MIR SINE MIR 0 262 195 1782 146 89 70 chr15 35457809 35457829 -65922692 + MLT1C LTR MaLR 1 19 -448 180 0 0 0 chr15 35457829 35457849 -65922672 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 1782 146 89 70 chr15 35457849 35458286 -65922235 + MLT1C LTR MaLR 19 467 0 362 78 0 94 chr15 35458538 35458602 -65921919 + MLT1A1 LTR MaLR 1 58 -307 2071 130 87 10 chr15 35458605 35458996 -65921525 - MSTA LTR MaLR -2 426 6 1762 141 6 52 chr15 35459001 35459327 -65921194 + MLT1A1 LTR MaLR 55 365 0 488 260 93 7 chr15 35460694 35460844 -65919677 + MER5A DNA MER1_type 1 163 -26 509 257 9 0 chr15 35461360 35461473 -65919048 + MER81 DNA DNA 1 114 0 612 220 29 29 chr15 35461988 35462161 -65918360 - MER5B DNA MER1_type -1 177 5 304 233 271 8 chr15 35462169 35462302 -65918219 - L2 LINE L2 -254 3059 2892 318 235 174 0 chr15 35462304 35462402 -65918119 + L2 LINE L2 3196 3310 -3 458 314 112 5 chr15 35462410 35462598 -65917923 - L2 LINE L2 -420 2894 2687 596 169 25 8 chr15 35462598 35462716 -65917805 + L1MDa LINE L1 18 137 -6403 732 165 41 41 chr15 35462716 35462886 -65917635 + LTR8 LTR ERV1 1 170 -521 408 285 209 6 chr15 35462886 35463044 -65917477 + L1MDa LINE L1 813 1002 -5538 5260 223 82 18 chr15 35463053 35463973 -65916548 + L1MDa LINE L1 1703 2562 -3978 2259 115 10 0 chr15 35463973 35464278 -65916243 + AluSx SINE Alu 1 308 -4 5260 223 82 18 chr15 35464278 35464310 -65916211 + L1MDa LINE L1 2562 2591 -3949 2317 122 97 8 chr15 35464310 35464703 -65915818 - MSTA LTR MaLR 0 428 1 5260 223 82 18 chr15 35464703 35466298 -65914223 + L1MDa LINE L1 2591 4434 -2106 3028 158 65 17 chr15 35466298 35466872 -65913649 - MER7C DNA MER2_type 0 602 2 5260 223 82 18 chr15 35466872 35466972 -65913549 + L1MDa LINE L1 4434 4526 -2014 1908 124 20 32 chr15 35466976 35467322 -65913199 + L1MD1 LINE L1 5901 6242 0 597 328 40 66 chr15 35467322 35467670 -65912851 - L2 LINE L2 -612 2702 2364 357 248 9 9 chr15 35468751 35468864 -65911657 - MER117 DNA MER1_type -28 169 57 380 305 29 9 chr15 35469271 35469376 -65911145 + L2 LINE L2 3195 3301 -12 4159 136 28 11 chr15 35469378 35470083 -65910438 + L1MB2 LINE L1 5448 6164 -7 1212 164 9 18 chr15 35470137 35470357 -65910164 + MER20 DNA MER1_type 2 219 0 201 121 0 0 chr15 35470428 35470461 -65910060 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1774 144 10 55 chr15 35471265 35471577 -65908944 + AluJo SINE Alu 1 298 -14 356 262 78 14 chr15 35472166 35472307 -65908214 + LTR67 LTR ERVL 400 549 -8 724 260 41 12 chr15 35472367 35472609 -65907912 - MIR SINE MIR 0 262 14 184 280 197 8 chr15 35472720 35472852 -65907669 + L2 LINE L2 3051 3207 -106 1525 199 161 17 chr15 35472857 35473329 -65907192 - MLT1F LTR MaLR 0 542 3 1895 158 24 0 chr15 35473905 35474196 -65906325 + AluJb SINE Alu 1 298 -14 2357 86 3 10 chr15 35474197 35474510 -65906011 + AluY SINE Alu 1 311 0 240 266 66 113 chr15 35474796 35474943 -65905578 + L1MEd LINE L1 535 687 -5432 1630 193 11 0 chr15 35474943 35475213 -65905308 + AluJb SINE Alu 1 273 -39 240 266 66 113 chr15 35475213 35475253 -65905268 + L1MEd LINE L1 687 727 -5392 2184 142 0 0 chr15 35475253 35475556 -65904965 - AluSx SINE Alu -9 303 1 240 266 66 113 chr15 35475556 35475686 -65904835 + L1MEd LINE L1 727 838 -5281 2124 123 18 26 chr15 35475788 35476170 -65904351 + L1MB2 LINE L1 5257 5635 -536 1961 121 21 12 chr15 35476170 35476493 -65904028 + L1MB2 LINE L1 5837 6169 -2 2232 104 3 0 chr15 35477781 35478070 -65902451 + AluSc SINE Alu 3 292 -17 5471 119 119 46 chr15 35479031 35479563 -65900958 + Tigger3b DNA MER2_type 1 493 -2535 1675 74 16 85 chr15 35479563 35479821 -65900700 - AluY SINE Alu -2 309 70 5471 119 119 46 chr15 35479821 35480434 -65900087 + Tigger3b DNA MER2_type 493 1230 -1 4841 160 6 50 chr15 35480820 35482211 -65898310 + L1PB4 LINE L1 4809 6144 -12 1804 249 106 22 chr15 35482296 35483099 -65897422 + L1MC4a LINE L1 5577 6446 -1362 381 121 30 0 chr15 35483219 35483285 -65897236 + L1PA16 LINE L1 6089 6156 -10 301 125 32 21 chr15 35485441 35485529 -65894992 + AluSp/q SINE Alu 252 298 -5 204 40 0 0 chr15 35485662 35485687 -65894834 + (A)n Simple_repeat Simple_repeat 1 25 0 201 310 0 23 chr15 35486075 35486162 -65894359 + T-rich Low_complexity Low_complexity 5 89 0 28 0 0 0 chr15 35486163 35486191 -65894330 + AT_rich Low_complexity Low_complexity 1 28 0 2171 154 95 31 chr15 35486413 35486866 -65893655 - MLT1D LTR MaLR -5 500 19 1782 223 133 21 chr15 35487094 35487627 -65892894 + MLT1E LTR MaLR 1 593 0 1722 153 183 16 chr15 35489055 35489421 -65891100 - MSTA LTR MaLR 0 428 2 495 0 0 0 chr15 35489421 35489476 -65891045 + (TG)n Simple_repeat Simple_repeat 2 56 0 650 307 16 0 chr15 35489633 35489825 -65890696 - MIR SINE MIR -49 213 19 2342 98 7 0 chr15 35491271 35491578 -65888943 + AluSp SINE Alu 1 309 -4 196 313 182 0 chr15 35492091 35492190 -65888331 + MIR SINE MIR 30 146 -62 250 175 25 0 chr15 35492430 35492510 -65888011 + (TA)n Simple_repeat Simple_repeat 2 83 0 894 146 0 127 chr15 35492510 35492715 -65887806 + FRAM SINE Alu 1 176 0 772 163 180 22 chr15 35493167 35493345 -65887176 + AluJb SINE Alu 96 301 -11 390 139 0 0 chr15 35493347 35493419 -65887102 + (GA)n Simple_repeat Simple_repeat 1 72 0 2086 142 3 3 chr15 35494060 35494370 -65886151 - AluSx SINE Alu -2 310 1 4203 130 83 8 chr15 35494468 35494605 -65885916 - L1MA9 LINE L1 0 6312 6187 351 0 0 0 chr15 35494605 35494644 -65885877 + (TG)n Simple_repeat Simple_repeat 2 40 0 4203 130 83 8 chr15 35494644 35494981 -65885540 - L1MA9 LINE L1 -125 6187 5877 243 0 0 0 chr15 35494981 35495008 -65885513 + (TG)n Simple_repeat Simple_repeat 2 28 0 4203 130 83 8 chr15 35495008 35495269 -65885252 - L1MA9 LINE L1 -435 5877 5521 431 278 35 7 chr15 35495636 35495780 -65884741 - MIR3 SINE MIR -36 172 25 387 331 29 33 chr15 35496258 35496500 -65884021 + L2 LINE L2 466 706 -2608 343 340 127 32 chr15 35496650 35497604 -65882917 + L2 LINE L2 1807 2850 -464 351 338 51 25 chr15 35497695 35497852 -65882669 + L2 LINE L2 3112 3272 0 666 182 42 14 chr15 35499895 35500038 -65880483 - L1MA10 LINE L1 -7 6327 6181 563 219 81 136 chr15 35500953 35501474 -65879047 - MLT1J LTR MaLR -19 492 1 2308 105 3 0 chr15 35502460 35502765 -65877756 + AluSp SINE Alu 1 306 -7 206 307 118 31 chr15 35502859 35502986 -65877535 + MIR3 SINE MIR 20 157 -51 489 321 16 21 chr15 35503535 35503725 -65876796 - MER5A DNA MER1_type 0 189 1 31 0 0 0 chr15 35504095 35504126 -65876395 + AT_rich Low_complexity Low_complexity 1 31 0 1262 192 91 113 chr15 35504312 35504782 -65875739 + MER34B LTR ERV1 1 495 -90 1322 166 72 97 chr15 35504782 35505102 -65875419 - AluJo SINE Alu 0 312 1 1262 192 91 113 chr15 35505102 35505192 -65875329 + MER34B LTR ERV1 495 585 0 581 182 27 0 chr15 35505486 35505596 -65874925 + MER34B LTR ERV1 161 273 -292 2123 131 3 0 chr15 35505774 35506131 -65874390 + AluSp SINE Alu 1 358 0 623 232 32 0 chr15 35506220 35506345 -65874176 + L2 LINE L2 3185 3313 0 297 198 161 0 chr15 35506465 35506546 -65873975 - MER63A DNA MER1_type -36 174 81 363 165 101 13 chr15 35506630 35506709 -65873812 - MER63A DNA MER1_type 0 86 1 22 35 0 0 chr15 35507073 35507102 -65873419 + AT_rich Low_complexity Low_complexity 1 29 0 1294 201 84 4 chr15 35507871 35508144 -65872377 - AluJo SINE Alu -16 296 2 1003 151 0 24 chr15 35508208 35508374 -65872147 + FRAM SINE Alu 8 169 -7 193 182 91 0 chr15 35508573 35508617 -65871904 - L2 LINE L2 -15 3298 3251 1672 192 69 65 chr15 35508952 35509416 -65871105 + MLT1C LTR MaLR 1 466 -1 6978 66 19 55 chr15 35509604 35511609 -65868912 - SVA Other Other -520 1386 2 234 91 0 0 chr15 35511614 35511647 -65868874 + (AGGGGG)n Simple_repeat Simple_repeat 2 34 0 1461 174 18 82 chr15 35512381 35512709 -65867812 - AluJo SINE Alu -5 307 1 499 242 92 0 chr15 35513099 35513219 -65867302 + FLAM_A SINE Alu 1 131 -2 1242 7 0 0 chr15 35513933 35514068 -65866453 - AluYb8 SINE Alu -5 313 179 25 0 0 0 chr15 35514070 35514095 -65866426 + AT_rich Low_complexity Low_complexity 1 25 0 393 278 0 0 chr15 35515396 35515486 -65865035 + MER5A DNA MER1_type 9 98 -91 1358 167 188 0 chr15 35515486 35515768 -65864753 - ERVL LTR ERVL -653 5111 4777 591 316 69 48 chr15 35515962 35516339 -65864182 + L3 LINE CR1 297 681 -896 29 84 0 0 chr15 35516418 35516489 -65864032 + AT_rich Low_complexity Low_complexity 1 71 0 402 282 98 63 chr15 35518064 35518125 -65862396 + MER5A DNA MER1_type 10 67 -122 2053 136 0 32 chr15 35518125 35518433 -65862088 + AluSx SINE Alu 1 298 -14 402 282 98 63 chr15 35518433 35518545 -65861976 + MER5A DNA MER1_type 67 189 0 1723 140 189 0 chr15 35519272 35519579 -65860942 + MER47A DNA MER2_type 2 366 0 4331 87 2 2 chr15 35520121 35520675 -65859846 - MER41A LTR ERV1 0 554 1 459 294 73 25 chr15 35521649 35521662 -65858859 + L1MB5 LINE L1 5773 5784 -390 1210 171 120 51 chr15 35521662 35521937 -65858584 + AluJb SINE Alu 1 294 -8 459 294 73 25 chr15 35521937 35522168 -65858353 + L1MB5 LINE L1 5784 6029 -145 * 2049 138 47 89 chr15 35521956 35522407 -65858114 + L1MD1 LINE L1 5811 6242 0 696 292 163 14 chr15 35523174 35523537 -65856984 - L2 LINE L2 -1 3312 2896 1209 124 0 17 chr15 35524172 35524350 -65856171 + AluSg/x SINE Alu 135 309 -1 693 292 81 72 chr15 35524817 35525273 -65855248 - MLT1K LTR MaLR -2 586 127 236 290 14 0 chr15 35525432 35525501 -65855020 + LTR67 LTR ERVL 111 180 -377 330 310 0 0 chr15 35525716 35525803 -65854718 + LTR67 LTR ERVL 410 496 -61 1851 100 115 0 chr15 35526639 35526908 -65853613 + AluSq SINE Alu 1 300 -13 2098 127 7 0 chr15 35527089 35527412 -65853109 + AluSx SINE Alu 1 325 0 260 229 62 10 chr15 35527413 35527509 -65853012 + L1ME4a LINE L1 5977 6077 -44 2094 133 3 13 chr15 35528668 35528983 -65851538 + AluJb SINE Alu 1 312 0 2849 138 48 84 chr15 35529223 35529596 -65850925 + L1MB7 LINE L1 5567 5952 -232 1920 183 0 0 chr15 35529596 35529908 -65850613 + AluJb SINE Alu 1 312 0 2849 138 48 84 chr15 35529908 35530098 -65850423 + L1MB7 LINE L1 5952 6108 -76 2353 74 0 0 chr15 35530098 35530410 -65850111 + AluY SINE Alu 1 312 0 2849 138 48 84 chr15 35530410 35530483 -65850038 + L1MB7 LINE L1 6108 6182 -2 2344 92 16 3 chr15 35530640 35530943 -65849578 - AluSx SINE Alu -5 307 1 1739 208 22 22 chr15 35531457 35531828 -65848693 - MLT1A2 LTR MaLR 0 374 4 2153 109 0 22 chr15 35531926 35532238 -65848283 + AluSx SINE Alu 1 305 -7 2252 95 0 20 chr15 35533333 35533638 -65846883 + AluSq SINE Alu 1 299 -14 1970 139 17 0 chr15 35533675 35533969 -65846552 - AluSx SINE Alu -13 299 1 2405 80 10 0 chr15 35534099 35534398 -65846123 + AluSq SINE Alu 1 302 -11 216 182 0 0 chr15 35534758 35534802 -65845719 + (TA)n Simple_repeat Simple_repeat 2 45 0 180 0 0 0 chr15 35534998 35535018 -65845503 + (CA)n Simple_repeat Simple_repeat 2 21 0 781 161 141 29 chr15 35538875 35539098 -65841423 - MLT1G3 LTR MaLR -180 410 149 695 53 0 11 chr15 35539118 35539213 -65841308 - HY3 scRNA scRNA -2 99 6 719 220 86 53 chr15 35539224 35539433 -65841088 - MLT1G1 LTR MaLR -379 216 1 2083 136 10 0 chr15 35539480 35539782 -65840739 + AluSx SINE Alu 1 305 -7 1434 170 11 97 chr15 35539919 35540120 -65840401 - MLT1A1 LTR MaLR -27 338 182 822 174 0 8 chr15 35540120 35540252 -65840269 - FLAM_A SINE Alu -1 132 2 1434 170 11 97 chr15 35540252 35540420 -65840101 - MLT1A1 LTR MaLR -183 182 1 2265 184 9 66 chr15 35540727 35541270 -65839251 + MLT2B1 LTR ERVL 1 512 -8 22 0 0 0 chr15 35541278 35541300 -65839221 + AT_rich Low_complexity Low_complexity 1 22 0 641 268 48 88 chr15 35541851 35542269 -65838252 + MLT1I LTR MaLR 5 405 -4 222 37 0 0 chr15 35542691 35542718 -65837803 + (TTG)n Simple_repeat Simple_repeat 1 27 0 215 152 22 0 chr15 35542817 35542863 -65837658 + GA-rich Low_complexity Low_complexity 2 48 0 306 253 133 40 chr15 35543314 35543464 -65837057 + MIR SINE MIR 85 248 -14 2003 176 0 0 chr15 35544078 35544390 -65836131 - AluJb SINE Alu 0 312 1 2087 110 14 21 chr15 35544398 35544688 -65835833 - AluY SINE Alu -23 288 1 568 294 58 25 chr15 35544694 35545021 -65835500 - MARNA DNA Mariner -36 550 213 1471 187 37 55 chr15 35545257 35545452 -65835069 + L1M4 LINE L1 1535 1732 -4912 1908 108 6 94 chr15 35545452 35545794 -65834727 + AluSx SINE Alu 1 312 0 1471 187 37 55 chr15 35545794 35546001 -65834520 + L1M4 LINE L1 1732 2030 -4614 801 209 0 0 chr15 35546217 35546365 -65834156 - MER77 LTR ERV1 -457 148 1 288 136 0 68 chr15 35546370 35546429 -65834092 + L1MC5 LINE L1 7529 7583 -378 1980 225 14 41 chr15 35546473 35547063 -65833458 - L1ME1 LINE L1 -5 6161 5588 1166 216 40 21 chr15 35547059 35547323 -65833198 + L1ME LINE L1 4985 5242 -924 * 2341 98 0 0 chr15 35547323 35547620 -65832901 + AluSg SINE Alu 1 297 -13 1166 216 40 21 chr15 35547620 35547951 -65832570 + L1ME LINE L1 5242 5590 -576 447 254 102 6 chr15 35547968 35548145 -65832376 - L1MC4 LINE L1 -1 8041 7848 233 297 0 0 chr15 35548158 35548232 -65832289 - L1MC4 LINE L1 -279 7763 7690 337 228 86 63 chr15 35548260 35548319 -65832202 + L1MC5 LINE L1 7600 7656 -305 1649 123 76 22 chr15 35548319 35548595 -65831926 - AluJo SINE Alu -21 291 1 337 228 86 63 chr15 35548595 35548803 -65831718 + L1MC5 LINE L1 7656 7873 -88 493 306 185 21 chr15 35548872 35549212 -65831309 - L2 LINE L2 -568 2746 2351 2200 71 7 10 chr15 35549833 35550128 -65830393 + AluSc SINE Alu 1 294 -15 24 32 0 0 chr15 35550535 35550566 -65829955 + GC_rich Low_complexity Low_complexity 1 31 0 1018 89 272 0 chr15 35551302 35551482 -65829039 + MER30 DNA MER1_type 2 230 0 1826 157 31 3 chr15 35551671 35551964 -65828557 - AluJo SINE Alu -11 301 1 418 182 0 26 chr15 35552109 35552186 -65828335 - L2 LINE L2 -50 3263 3189 234 178 22 0 chr15 35552674 35552719 -65827802 - L2 LINE L2 -1 3271 3226 2040 109 14 0 chr15 35552758 35553042 -65827479 - AluSx SINE Alu -24 288 1 594 259 89 4 chr15 35553044 35553280 -65827241 - MER46C DNA MER2_type -15 323 68 377 291 120 14 chr15 35553484 35553759 -65826762 - L1ME1 LINE L1 -2191 5617 5314 552 273 115 40 chr15 35554320 35554598 -65825923 + L2 LINE L2 3013 3311 -2 402 282 135 0 chr15 35554972 35555130 -65825391 + MIR SINE MIR 6 182 -62 449 285 199 8 chr15 35555344 35555600 -65824921 + L2 LINE L2 3008 3312 -1 24 32 0 0 chr15 35555714 35555745 -65824776 + AT_rich Low_complexity Low_complexity 1 31 0 493 237 59 13 chr15 35556424 35556576 -65823945 - MER20B DNA MER1_type -618 165 7 21 71 0 0 chr15 35556947 35556989 -65823532 + AT_rich Low_complexity Low_complexity 1 42 0 2359 193 46 97 chr15 35557060 35557826 -65822695 - MER21B LTR ERV1 -124 739 13 245 256 0 13 chr15 35557914 35557992 -65822529 + L1ME LINE L1 5684 5760 -361 1040 195 19 5 chr15 35557995 35558205 -65822316 - MER20 DNA MER1_type -3 216 4 180 0 0 0 chr15 35559685 35559705 -65820816 + (T)n Simple_repeat Simple_repeat 1 20 0 1787 178 30 7 chr15 35560016 35560319 -65820202 + AluJo SINE Alu 2 311 -1 2548 47 0 7 chr15 35560769 35561069 -65819452 - AluY SINE Alu -13 298 1 826 152 8 0 chr15 35561484 35561616 -65818905 - FLAM_C SINE Alu 0 133 1 27 49 0 0 chr15 35561618 35561659 -65818862 + AT_rich Low_complexity Low_complexity 1 41 0 10464 115 22 13 chr15 35561694 35563410 -65817111 + Tigger1 DNA MER2_type 688 2418 0 548 287 153 18 chr15 35563838 35564120 -65816401 - L2 LINE L2 0 3313 2994 31 44 0 0 chr15 35566328 35566373 -65814148 + AT_rich Low_complexity Low_complexity 1 45 0 2058 124 23 3 chr15 35566650 35566956 -65813565 + AluSx SINE Alu 1 312 0 448 194 29 19 chr15 35567042 35567145 -65813376 + U13 snRNA snRNA 1 104 0 1057 120 0 7 chr15 35567514 35567691 -65812830 - AluSp SINE Alu 0 312 137 256 105 0 0 chr15 35568057 35568095 -65812426 + AluSp/q SINE Alu 198 235 -68 486 264 68 71 chr15 35568276 35568587 -65811934 - L1M4 LINE L1 -1334 4812 4503 1737 151 54 13 chr15 35568596 35568911 -65811610 - AluJo SINE Alu 0 328 2 2092 151 0 6 chr15 35569170 35569482 -65811039 - AluSg SINE Alu 0 310 1 204 200 0 0 chr15 35570265 35570310 -65810211 + A-rich Low_complexity Low_complexity 5 49 0 2188 122 0 3 chr15 35570596 35570890 -65809631 - AluSx SINE Alu -19 293 1 247 317 39 10 chr15 35571209 35571313 -65809208 + MIR SINE MIR 47 153 -109 1133 114 0 0 chr15 35571638 35571813 -65808708 - L1MA5A LINE L1 0 6297 6123 2337 97 0 0 chr15 35572341 35572640 -65807881 - AluSg SINE Alu -11 299 1 679 133 0 0 chr15 35573626 35573724 -65806797 + AluJ/FLAM SINE Alu 2 99 -213 619 296 160 30 chr15 35573731 35574069 -65806452 + L2 LINE L2 2921 3302 -11 257 193 0 0 chr15 35574404 35574461 -65806060 - L1MB5 LINE L1 -8 6166 6110 2222 95 3 7 chr15 35576218 35576523 -65803998 + AluY SINE Alu 1 304 -7 762 154 29 0 chr15 35577693 35577829 -65802692 + MER3 DNA MER1_type 5 144 -65 902 193 12 6 chr15 35578450 35578611 -65801910 + FRAM SINE Alu 2 163 -3 781 173 7 22 chr15 35578798 35578937 -65801584 - FRAM SINE Alu -18 158 22 918 207 25 0 chr15 35580720 35580918 -65799603 + MER20 DNA MER1_type 5 207 -12 2194 101 0 7 chr15 35581463 35581759 -65798762 - AluSq SINE Alu -19 294 1 1746 141 3 96 chr15 35582523 35582856 -65797665 + AluJb SINE Alu 1 302 0 276 197 66 26 chr15 35583020 35583096 -65797425 + L1ME4a LINE L1 5944 6022 -99 381 322 135 10 chr15 35584727 35584935 -65795586 + MIR SINE MIR 23 256 -6 280 185 136 0 chr15 35585707 35585788 -65794733 + L1ME LINE L1 5708 5799 -363 1988 74 0 19 chr15 35585904 35586173 -65794348 + L1PA8 LINE L1 5907 6170 -2 4205 101 3 15 chr15 35586247 35586902 -65793619 + L1MA3 LINE L1 5316 5962 -343 8405 82 12 2 chr15 35588178 35589397 -65791124 + L1P LINE L1 3700 4930 -1216 381 327 45 13 chr15 35590217 35590373 -65790148 - MIR SINE MIR -41 221 61 444 202 8 16 chr15 35590717 35590841 -65789680 + L1 LINE L1 2974 3096 -3050 * 6331 81 18 11 chr15 35590838 35591778 -65788743 + L1P LINE L1 3854 4800 -1346 2035 107 57 13 chr15 35592403 35592703 -65787818 - AluSp SINE Alu 0 313 1 242 337 81 12 chr15 35592903 35592989 -65787532 + L2 LINE L2 3160 3251 -21 3557 59 0 0 chr15 35593562 35594006 -65786515 + L1PA5 LINE L1 5698 6141 -13 249 326 41 20 chr15 35594045 35594143 -65786378 - L2 LINE L2 0 3272 3173 435 252 15 15 chr15 35594462 35594597 -65785924 + FRAM SINE Alu 36 170 -6 192 152 0 0 chr15 35596943 35596976 -65783545 + (TA)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr15 35597984 35598006 -65782515 + AT_rich Low_complexity Low_complexity 1 22 0 2463 78 0 0 chr15 35598470 35598776 -65781745 - AluY SINE Alu -5 306 1 635 276 87 0 chr15 35599036 35599232 -65781289 + MIR SINE MIR 29 241 -21 436 288 131 0 chr15 35599522 35599751 -65780770 + L1MC4a LINE L1 5672 5930 -1878 25 65 0 0 chr15 35599917 35599963 -65780558 + AT_rich Low_complexity Low_complexity 1 46 0 1597 165 9 73 chr15 35600219 35600358 -65780163 + AluJo SINE Alu 1 147 -165 1987 128 0 24 chr15 35600358 35600676 -65779845 + AluSx SINE Alu 1 311 0 1597 165 9 73 chr15 35600676 35600861 -65779660 + AluJo SINE Alu 147 306 -6 816 229 34 0 chr15 35600903 35601078 -65779443 - MER5A DNA MER1_type -8 181 1 1918 146 31 0 chr15 35601193 35601481 -65779040 + AluJb SINE Alu 1 297 -15 213 311 0 49 chr15 35602423 35602484 -65778037 + MIR SINE MIR 26 83 -125 471 335 88 13 chr15 35604204 35604431 -65776090 - MIR SINE MIR -8 254 11 371 283 0 19 chr15 35604944 35605050 -65775471 - MIR SINE MIR -80 182 79 503 174 55 0 chr15 35606006 35606166 -65774355 - AluSg/x SINE Alu 0 358 193 203 0 37 0 chr15 35606249 35606276 -65774245 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 1852 127 54 42 chr15 35606314 35606645 -65773876 - MER1B DNA MER1_type -1 336 2 850 93 36 0 chr15 35607725 35607864 -65772657 + MER30 DNA MER1_type 1 144 -86 890 171 0 0 chr15 35609823 35609969 -65770552 - FRAM SINE Alu -30 146 1 2325 84 7 0 chr15 35610214 35610500 -65770021 + AluSq SINE Alu 9 296 -17 2626 40 3 0 chr15 35611041 35611340 -65769181 - AluY SINE Alu -11 300 1 13457 74 5 7 chr15 35611667 35612564 -65767957 - L1PA7 LINE L1 0 6154 5257 2143 109 3 0 chr15 35612564 35612858 -65767663 - AluSp SINE Alu -18 295 1 13457 74 5 7 chr15 35612858 35614551 -65765970 - L1PA7 LINE L1 -897 5257 3565 1336 86 43 0 chr15 35614552 35614761 -65765760 + L1PA7 LINE L1 3333 3550 -2596 577 253 112 18 chr15 35615199 35615393 -65765128 + MIR SINE MIR 15 225 -37 2254 100 0 3 chr15 35615688 35616005 -65764516 + AluSq SINE Alu 1 316 0 22 0 0 0 chr15 35616655 35616677 -65763844 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr15 35616865 35616887 -65763634 + AT_rich Low_complexity Low_complexity 1 22 0 1640 186 75 3 chr15 35617451 35617769 -65762752 + MER58B DNA MER1_type 1 341 0 2202 136 0 0 chr15 35617835 35618136 -65762385 + AluSx SINE Alu 1 301 -11 193 269 66 86 chr15 35619996 35620193 -65760328 - L2 LINE L2 -349 2965 2773 757 252 60 28 chr15 35620485 35620703 -65759818 + MIR SINE MIR 5 229 -33 1242 90 0 0 chr15 35622151 35622363 -65758158 + (TCCA)n Simple_repeat Simple_repeat 1 212 0 1028 281 107 69 chr15 35622405 35623418 -65757103 - L2 LINE L2 -83 3230 2164 1812 162 0 3 chr15 35623443 35623727 -65756794 + AluJo SINE Alu 2 284 -28 2172 112 0 0 chr15 35623952 35624258 -65756263 - AluSq SINE Alu 0 306 1 236 250 42 28 chr15 35624680 35624824 -65755697 + T-rich Low_complexity Low_complexity 5 150 0 2822 150 16 6 chr15 35624824 35625323 -65755198 - L1MA9 LINE L1 0 6312 5809 2055 132 0 20 chr15 35625539 35625842 -65754679 + AluJb SINE Alu 1 297 -15 183 139 0 0 chr15 35627374 35627410 -65753111 + (T)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr15 35628432 35628454 -65752067 + AT_rich Low_complexity Low_complexity 1 22 0 1320 82 0 22 chr15 35630589 35630772 -65749749 + AluSg/x SINE Alu 126 304 -8 392 273 55 42 chr15 35630852 35631017 -65749504 + MER5B DNA MER1_type 2 168 -10 252 122 71 71 chr15 35631295 35631393 -65749128 + L1ME4a LINE L1 6023 6120 -1 672 285 85 41 chr15 35633060 35633544 -65746977 + L1MB7 LINE L1 5316 5820 -1988 1809 164 21 0 chr15 35633549 35633835 -65746686 + AluJo SINE Alu 1 292 -20 879 139 0 8 chr15 35633843 35633972 -65746549 - FLAM_C SINE Alu -15 128 1 1028 188 125 53 chr15 35634031 35634351 -65746170 - MER2 DNA MER2_type 0 344 2 912 106 0 28 chr15 35634505 35634647 -65745874 + AluSg/x SINE Alu 175 312 0 2388 86 0 0 chr15 35634683 35634987 -65745534 - AluY SINE Alu -7 304 1 314 187 53 53 chr15 35635021 35635096 -65745425 - MER2 DNA MER2_type -3 342 268 508 220 0 0 chr15 35635972 35636081 -65744440 + L1MB7 LINE L1 6069 6177 -7 199 308 0 19 chr15 35636928 35636980 -65743541 - MIR SINE MIR -112 96 46 188 309 98 32 chr15 35637922 35638045 -65742476 + L2 LINE L2 3173 3303 -10 1531 171 18 11 chr15 35638186 35638506 -65742015 - AluJb SINE Alu 0 322 1 192 178 22 44 chr15 35639230 35639275 -65741246 - L2 LINE L2 -16 3256 3213 479 339 0 16 chr15 35642041 35642168 -65738353 - MIR3 SINE MIR -48 160 36 24 32 0 0 chr15 35642228 35642259 -65738262 + AT_rich Low_complexity Low_complexity 1 31 0 833 156 0 0 chr15 35642283 35642411 -65738110 - FRAM SINE Alu -9 167 40 1894 105 37 125 chr15 35642493 35642902 -65737619 - THE1C LTR MaLR -2 373 1 10842 87 78 3 chr15 35642902 35644372 -65736149 - THE1B-int LTR MaLR 0 1580 1 2593 108 5 24 chr15 35644372 35644743 -65735778 - THE1B LTR MaLR 0 364 1 380 229 94 25 chr15 35646541 35646618 -65733903 - L1MD3 LINE L1 -21 7974 7904 492 18 0 0 chr15 35646618 35646675 -65733846 + (TA)n Simple_repeat Simple_repeat 1 57 0 1834 141 0 7 chr15 35646675 35646958 -65733563 - AluJb SINE Alu -26 286 6 380 229 94 25 chr15 35646958 35647107 -65733414 - L1MD3 LINE L1 -90 7905 6048 * 1083 156 46 25 chr15 35647094 35647332 -65733189 - L1MDa LINE L1 -4221 2319 2077 * 1177 181 55 38 chr15 35647327 35647620 -65732901 - L1MDa LINE L1 -4724 1816 1519 548 219 0 0 chr15 35647641 35647737 -65732784 - AluJ/FLAM SINE Alu -215 97 2 1301 150 73 13 chr15 35647738 35648024 -65732497 - MER33 DNA MER1_type -37 287 1 2124 141 6 35 chr15 35648535 35648882 -65731639 + MER1B DNA MER1_type 1 337 0 1800 142 9 28 chr15 35648994 35649312 -65731209 + AluJo SINE Alu 1 312 0 1644 141 6 48 chr15 35649478 35649625 -65730896 + AluSx SINE Alu 1 130 -182 264 30 0 0 chr15 35649625 35649658 -65730863 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1644 141 6 48 chr15 35649658 35649822 -65730699 + AluSx SINE Alu 130 299 -13 1740 180 39 25 chr15 35650262 35650695 -65729826 - MLT1D LTR MaLR 0 505 1 326 23 23 0 chr15 35651298 35651341 -65729180 + (TG)n Simple_repeat Simple_repeat 2 45 0 2164 62 28 0 chr15 35651854 35652143 -65728378 - AluY SINE Alu -14 297 1 510 217 17 0 chr15 35652451 35652571 -65727950 - L1M4 LINE L1 -2453 3693 3572 873 249 42 29 chr15 35652604 35652986 -65727535 - L1M4 LINE L1 -2685 3461 3056 669 250 90 5 chr15 35652987 35653175 -65727346 + MER58C DNA MER1_type 2 205 -10 352 218 75 41 chr15 35653175 35653333 -65727188 - L1M4 LINE L1 -3673 2473 2322 743 145 48 8 chr15 35653333 35653457 -65727064 - FLAM_A SINE Alu -4 129 1 352 218 75 41 chr15 35653457 35653514 -65727007 - L1M4 LINE L1 -3824 2322 2268 2053 113 30 0 chr15 35653514 35653814 -65726707 - AluSg SINE Alu -1 309 1 352 218 75 41 chr15 35653814 35653842 -65726679 - L1M4 LINE L1 -3878 2268 2186 1220 135 31 0 chr15 35653847 35654040 -65726481 - AluSg/x SINE Alu -10 300 102 199 327 87 67 chr15 35654200 35654604 -65725917 - L2 LINE L2 -340 2974 2563 1097 138 159 0 chr15 35654806 35654995 -65725526 - MER20 DNA MER1_type 0 219 1 1630 158 20 23 chr15 35655289 35655593 -65724928 + AluJo SINE Alu 1 303 -9 322 257 79 46 chr15 35655898 35656050 -65724471 + L1ME4a LINE L1 5536 5692 -429 2125 163 58 61 chr15 35656050 35656571 -65723950 - Charlie1b DNA MER1_type 0 523 5 279 273 110 43 chr15 35656579 35656725 -65723796 + L1ME4a LINE L1 5743 5878 -243 2307 71 3 3 chr15 35656725 35657035 -65723486 + AluY SINE Alu 1 310 -1 279 273 110 43 chr15 35657035 35657188 -65723333 + L1ME4a LINE L1 5878 6062 -59 1198 211 8 8 chr15 35657196 35657443 -65723078 - AluJo SINE Alu -17 295 49 1077 194 47 9 chr15 35657507 35657718 -65722803 + MER20 DNA MER1_type 1 219 0 196 389 44 9 chr15 35659917 35660030 -65720491 - L2 LINE L2 -6 3266 3150 2134 107 0 0 chr15 35660074 35660365 -65720156 + AluSx SINE Alu 1 291 -21 2071 121 0 0 chr15 35660845 35661142 -65719379 - AluSx SINE Alu -15 297 1 1050 185 78 45 chr15 35662168 35662411 -65718110 - MIR SINE MIR -11 251 1 24 0 0 0 chr15 35662499 35662523 -65717998 + AT_rich Low_complexity Low_complexity 1 24 0 2403 69 0 3 chr15 35662861 35663164 -65717357 + AluSq SINE Alu 1 302 -11 1870 146 13 7 chr15 35664304 35664606 -65715915 + AluJo SINE Alu 1 304 -8 507 118 0 0 chr15 35665455 35665540 -65714981 + (CTG)n Simple_repeat Simple_repeat 2 86 0 728 282 42 6 chr15 35668497 35668725 -65711796 + MIR SINE MIR 28 262 0 2538 45 0 3 chr15 35668811 35669119 -65711402 + AluY SINE Alu 1 307 -4 235 211 53 0 chr15 35669158 35669215 -65711306 + MIR SINE MIR 38 97 -111 767 308 78 34 chr15 35669243 35669894 -65710627 - L2 LINE L2 -11 3302 2622 302 325 8 32 chr15 35670087 35670213 -65710308 + LTR67 LTR ERVL 93 215 -342 1080 153 16 37 chr15 35670230 35670420 -65710101 - MER30B DNA MER1_type -4 186 1 637 289 102 9 chr15 35670529 35670754 -65709767 + L2 LINE L2 2226 2471 -843 861 198 0 0 chr15 35670754 35670926 -65709595 - AluJb SINE Alu -19 293 122 275 254 0 0 chr15 35671023 35671082 -65709439 + MLT1E2 LTR MaLR 2 60 -566 549 309 85 11 chr15 35671147 35671335 -65709186 + MIR SINE MIR 13 214 -48 664 165 127 7 chr15 35671352 35671493 -65709028 - MER3 DNA MER1_type -63 146 2 187 143 0 0 chr15 35671510 35671538 -65708983 + MIR SINE MIR 221 248 -14 789 175 126 10 chr15 35671580 35671786 -65708735 + MER113 DNA MER1_type? 15 244 -277 257 266 13 0 chr15 35672498 35672577 -65707944 + (TTAGGG)n Simple_repeat Simple_repeat 5 84 0 460 200 24 0 chr15 35672679 35672764 -65707757 + AluJb SINE Alu 203 289 -23 1167 211 89 28 chr15 35672770 35673097 -65707424 - LTR37A LTR ERV1 -72 354 8 204 177 16 16 chr15 35673099 35673161 -65707360 + T-rich Low_complexity Low_complexity 4 65 0 528 140 30 30 chr15 35673186 35673286 -65707235 + MIR SINE MIR 97 196 -66 254 233 194 49 chr15 35673925 35674128 -65706393 + MIR SINE MIR 8 251 -11 353 268 41 0 chr15 35674688 35674785 -65705736 - MIR SINE MIR -11 251 151 388 259 93 43 chr15 35675059 35675221 -65705300 + MIR SINE MIR 44 213 -49 560 228 28 90 chr15 35676189 35676400 -65704121 - MIR3 SINE MIR -8 200 3 225 0 0 0 chr15 35678034 35678059 -65702462 + (TTA)n Simple_repeat Simple_repeat 2 26 0 820 100 0 9 chr15 35678059 35678169 -65702352 - AluJb SINE Alu -191 121 13 634 251 53 6 chr15 35678314 35678485 -65702036 + MIR3 SINE MIR 9 187 -21 1644 141 6 48 chr15 35679595 35679742 -65700779 + AluSx SINE Alu 1 130 -182 264 30 0 0 chr15 35679742 35679775 -65700746 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1644 141 6 48 chr15 35679775 35679939 -65700582 + AluSx SINE Alu 130 299 -13 1740 180 39 25 chr15 35680379 35680812 -65699709 - MLT1D LTR MaLR 0 505 1 326 23 23 0 chr15 35681415 35681458 -65699063 + (TG)n Simple_repeat Simple_repeat 2 45 0 2032 95 39 0 chr15 35681971 35682256 -65698265 - AluSg SINE Alu -14 296 1 1220 135 31 0 chr15 35682289 35682482 -65698039 - AluSg/x SINE Alu -10 300 102 199 327 87 67 chr15 35682642 35683046 -65697475 - L2 LINE L2 -340 2974 2563 1097 138 159 0 chr15 35683248 35683437 -65697084 - MER20 DNA MER1_type 0 219 1 1472 155 24 28 chr15 35683744 35684035 -65696486 + AluJo SINE Alu 14 303 -9 322 257 79 46 chr15 35684340 35684492 -65696029 + L1ME LINE L1 5536 5692 -429 1301 148 80 82 chr15 35684492 35684869 -65695652 - Charlie1b DNA MER1_type 0 523 148 252 188 0 87 chr15 35685216 35685285 -65695236 - MER21B LTR ERV1 -124 739 677 3423 189 150 14 chr15 35685285 35686045 -65694476 + MER21B LTR ERV1 1 863 0 1163 249 61 93 chr15 35686045 35686622 -65693899 - MER21B LTR ERV1 -180 683 126 430 224 0 0 chr15 35686684 35686760 -65693761 - MER21B LTR ERV1 -767 96 21 246 213 0 0 chr15 35687107 35687154 -65693367 + L2 LINE L2 3016 3062 -210 214 259 0 19 chr15 35687435 35687489 -65693032 + L2 LINE L2 3139 3191 -81 435 277 45 0 chr15 35690309 35690421 -65690100 - L2 LINE L2 -5 3267 3151 29 0 0 0 chr15 35690555 35690584 -65689937 + AT_rich Low_complexity Low_complexity 1 29 0 352 259 215 19 chr15 35690713 35690918 -65689603 - L1MC4a LINE L1 -1845 5963 5719 450 203 39 52 chr15 35690971 35691086 -65689435 - L1MC4a LINE L1 -562 5592 5507 1503 144 4 38 chr15 35691093 35691394 -65689127 - AluJo SINE Alu 0 319 28 1808 152 55 52 chr15 35691696 35692058 -65688463 - MLT1A1 LTR MaLR -2 363 1 405 284 146 65 chr15 35692147 35692417 -65688104 - L2 LINE L2 -252 3061 2814 1721 142 3 48 chr15 35692417 35692728 -65687793 + L1MB8 LINE L1 5873 6169 -9 1749 139 0 63 chr15 35692729 35693059 -65687462 - AluJb SINE Alu 0 311 1 405 284 146 65 chr15 35693059 35693473 -65687048 - L2 LINE L2 -498 2815 2317 287 309 64 9 chr15 35693495 35693605 -65686916 - MIR SINE MIR -7 255 140 2170 90 28 0 chr15 35694045 35694334 -65686187 - AluSx SINE Alu -15 297 1 198 200 218 0 chr15 35694510 35694565 -65685956 - L2 LINE L2 -20 3252 3186 387 189 78 0 chr15 35694574 35694664 -65685857 + L1MB2 LINE L1 6068 6164 -7 266 325 26 34 chr15 35694736 35694853 -65685668 - L2 LINE L2 0 3313 3198 244 246 62 0 chr15 35694868 35694881 -65685640 + MER3 DNA MER1_type 33 49 -160 783 219 60 0 chr15 35694881 35695064 -65685457 - MER3 DNA MER1_type -1 208 15 259 362 57 0 chr15 35695109 35695214 -65685307 - MER91A DNA MER1_type -2 194 84 196 254 100 36 chr15 35695360 35695470 -65685051 + L2 LINE L2 2937 3053 -219 533 279 70 35 chr15 35696226 35696427 -65684094 + MIR SINE MIR 20 227 -35 324 314 39 0 chr15 35696411 35696513 -65684008 + MIR SINE MIR 50 155 -107 * 665 94 19 0 chr15 35696768 35696874 -65683647 + (TTCC)n Simple_repeat Simple_repeat 1 108 0 354 247 0 0 chr15 35696887 35696972 -65683549 - FRAM SINE Alu -15 151 67 1822 85 0 85 chr15 35697068 35697385 -65683136 - AluY SINE Alu -20 291 2 709 159 48 0 chr15 35697391 35697517 -65683004 - FLAM_C SINE Alu 0 143 12 333 265 139 42 chr15 35697535 35697701 -65682820 - L1MC/D LINE L1 -796 5446 5265 928 224 0 0 chr15 35697826 35697982 -65682539 + FAM SINE Alu 1 156 -19 28 0 0 0 chr15 35697986 35698014 -65682507 + AT_rich Low_complexity Low_complexity 1 28 0 3951 155 106 29 chr15 35698828 35700212 -65680309 + pTR5 LTR ERV1 745 2606 0 790 196 0 0 chr15 35700295 35700428 -65680093 + AluJ SINE Alu 1 133 -169 2372 54 7 0 chr15 35700535 35700831 -65679690 - AluY SINE Alu -13 298 1 358 189 54 0 chr15 35701980 35702054 -65678467 - MER45A DNA AcHobo -1 177 100 1874 160 3 3 chr15 35702054 35702354 -65678167 + AluJb SINE Alu 2 301 -11 915 145 0 7 chr15 35702359 35702511 -65678010 + AluJ SINE Alu 140 290 -22 367 192 0 55 chr15 35702523 35702596 -65677925 - MER45A DNA AcHobo -86 92 24 1848 140 0 28 chr15 35703045 35703366 -65677155 - AluJb SINE Alu 0 312 1 399 237 34 0 chr15 35705269 35705387 -65675134 - Charlie2 DNA MER1_type -31 2831 2710 777 177 32 57 chr15 35705443 35705659 -65674862 - Charlie2 DNA MER1_type -145 2717 2506 2008 157 0 0 chr15 35705659 35705971 -65674550 - AluJb SINE Alu 0 312 1 777 177 32 57 chr15 35705971 35706002 -65674519 - Charlie2 DNA MER1_type -356 2506 2476 1010 166 6 11 chr15 35706002 35706183 -65674338 + AluJb SINE Alu 133 312 0 1747 197 69 36 chr15 35706202 35706235 -65674286 - Charlie2 DNA MER1_type -424 2438 2408 2221 90 7 3 chr15 35706235 35706535 -65673986 + AluSc SINE Alu 1 301 -8 1747 197 69 36 chr15 35706535 35707049 -65673472 - Charlie2 DNA MER1_type -454 2408 1873 703 298 105 16 chr15 35707058 35707316 -65673205 - Charlie2 DNA MER1_type -2478 304 24 2258 133 37 50 chr15 35707593 35708051 -65672470 - Tigger2 DNA MER2_type 0 2718 2267 2008 122 3 22 chr15 35708053 35708365 -65672156 + AluJb SINE Alu 1 306 -6 362 188 12 30 chr15 35708824 35708847 -65671674 + L1MC4 LINE L1 1982 2004 -6318 2090 114 0 0 chr15 35708847 35709136 -65671385 + AluSx SINE Alu 1 289 -23 362 188 12 30 chr15 35709136 35709199 -65671322 + L1MC4 LINE L1 2004 6999 -1323 708 276 36 78 chr15 35709396 35709729 -65670792 - MLT1I LTR MaLR 0 409 91 394 246 120 28 chr15 35709904 35710046 -65670475 - MER117 DNA MER1_type -40 157 3 248 130 22 0 chr15 35710336 35710382 -65670139 + GA-rich Low_complexity Low_complexity 3 49 0 22 35 0 0 chr15 35710558 35710587 -65669934 + AT_rich Low_complexity Low_complexity 1 29 0 323 307 10 10 chr15 35711990 35712091 -65668430 - L2 LINE L2 -21 3251 3151 381 22 0 0 chr15 35712475 35712521 -65668000 + (TG)n Simple_repeat Simple_repeat 2 47 0 198 0 0 0 chr15 35713395 35713417 -65667104 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 2264 89 0 3 chr15 35713430 35713732 -65666789 + AluSx SINE Alu 1 301 -11 364 295 34 40 chr15 35713747 35713896 -65666625 - MIR3 SINE MIR -26 182 35 534 139 9 61 chr15 35714826 35714870 -65665651 + MLT1F LTR MaLR 434 479 -63 2335 77 0 10 chr15 35714870 35715182 -65665339 - AluSg SINE Alu -1 309 1 534 139 9 61 chr15 35715182 35715252 -65665269 + MLT1F LTR MaLR 479 542 0 198 385 108 0 chr15 35715373 35715521 -65665000 - L2 LINE L2 -655 2659 2496 1037 241 25 4 chr15 35715547 35715783 -65664738 - MIR SINE MIR -2 260 20 329 299 31 0 chr15 35716248 35716345 -65664176 + MIR3 SINE MIR 98 197 -11 327 333 0 10 chr15 35716732 35716831 -65663690 - MIR SINE MIR -66 142 45 840 190 62 22 chr15 35719189 35719368 -65661153 - MER91A DNA MER1_type 0 196 11 309 68 0 0 chr15 35721582 35721626 -65658895 + (CA)n Simple_repeat Simple_repeat 2 45 0 352 206 0 0 chr15 35722970 35723038 -65657483 + MER5A DNA MER1_type 4 71 -118 284 263 25 25 chr15 35723098 35723178 -65657343 - MIR SINE MIR -172 90 11 353 322 20 20 chr15 35723736 35723882 -65656639 + MER5B DNA MER1_type 1 146 -32 426 204 95 7 chr15 35723914 35724051 -65656470 - L1ME4a LINE L1 -6 6115 5967 216 0 0 0 chr15 35725303 35725327 -65655194 + (T)n Simple_repeat Simple_repeat 1 24 0 254 310 150 14 chr15 35725629 35725842 -65654679 - MIR SINE MIR -20 242 1 336 298 85 7 chr15 35726724 35726865 -65653656 + MIR SINE MIR 60 211 -51 2193 101 7 0 chr15 35728646 35728952 -65651569 + AluSp SINE Alu 1 308 -5 311 293 14 0 chr15 35728952 35729049 -65651472 - MIR SINE MIR -85 123 19 446 284 130 0 chr15 35730449 35730611 -65649910 - MIR SINE MIR -44 218 36 2212 76 41 0 chr15 35731299 35731589 -65648932 + AluSx SINE Alu 4 305 -7 546 16 0 0 chr15 35735667 35735730 -65644791 + (CA)n Simple_repeat Simple_repeat 2 64 0 384 22 0 0 chr15 35736707 35736752 -65643769 + (TG)n Simple_repeat Simple_repeat 1 45 0 288 0 0 0 chr15 35737393 35737425 -65643096 + (CA)n Simple_repeat Simple_repeat 2 33 0 23 33 0 0 chr15 35737912 35737942 -65642579 + GC_rich Low_complexity Low_complexity 1 30 0 229 188 29 29 chr15 35737947 35738016 -65642505 + G-rich Low_complexity Low_complexity 4 72 0 341 310 186 0 chr15 35738797 35738910 -65641611 - L2 LINE L2 -13 3259 3126 1908 104 11 0 chr15 35739060 35739362 -65641159 + AluSx SINE Alu 13 317 0 1816 157 0 20 chr15 35740440 35740745 -65639776 - AluJo SINE Alu -13 299 1 543 239 0 0 chr15 35742070 35742237 -65638284 + (TG)n Simple_repeat Simple_repeat 1 167 0 185 138 0 0 chr15 35742587 35742616 -65637905 + L2 LINE L2 3244 3272 0 746 149 0 101 chr15 35742755 35742903 -65637618 - FLAM_A SINE Alu 0 133 1 305 281 0 0 chr15 35743528 35743592 -65636929 - L2 LINE L2 -9 3263 3200 1457 199 33 19 chr15 35743871 35744178 -65636343 + AluJo SINE Alu 1 311 -1 287 242 0 16 chr15 35744184 35744246 -65636275 + MIR SINE MIR 16 76 -132 2237 90 3 7 chr15 35744351 35744661 -65635860 + AluSp SINE Alu 1 309 -4 319 300 100 15 chr15 35744720 35744850 -65635671 - MIR SINE MIR -3 259 119 1972 122 3 10 chr15 35745623 35745918 -65634603 - AluSx SINE Alu -19 293 1 28 0 0 0 chr15 35746719 35746747 -65633774 + AT_rich Low_complexity Low_complexity 1 28 0 2190 100 0 0 chr15 35746749 35747049 -65633472 + AluSx SINE Alu 1 300 -12 2125 131 0 0 chr15 35747939 35748245 -65632276 + AluSx SINE Alu 1 306 -6 440 282 73 28 chr15 35748247 35748495 -65632026 + MIR SINE MIR 2 260 -2 888 165 0 40 chr15 35748542 35748743 -65631778 + AluJb SINE Alu 136 312 0 2066 103 7 0 chr15 35748833 35749123 -65631398 + AluSg SINE Alu 1 292 -18 2102 168 12 0 chr15 35749152 35749491 -65631030 - MER2 DNA MER2_type 0 344 2 295 277 0 36 chr15 35749509 35749592 -65630929 + MIR SINE MIR 176 255 -7 1020 137 6 57 chr15 35749643 35749780 -65630741 + MER5A DNA MER1_type 2 144 -45 429 20 0 0 chr15 35749780 35749830 -65630691 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 1719 171 0 0 chr15 35749830 35750112 -65630409 - AluJb SINE Alu -30 282 1 1020 137 6 57 chr15 35750112 35750151 -65630370 + MER5A DNA MER1_type 142 165 -24 692 204 41 70 chr15 35750151 35750214 -65630307 + MER5B DNA MER1_type 1 64 -114 1971 155 0 0 chr15 35750214 35750518 -65630003 + AluSx SINE Alu 1 304 -8 692 204 41 70 chr15 35750518 35750626 -65629895 + MER5B DNA MER1_type 64 167 -11 207 268 297 22 chr15 35751438 35751576 -65628945 + MIR3 SINE MIR 81 256 -6 189 0 0 0 chr15 35752380 35752401 -65628120 + (CAGGG)n Simple_repeat Simple_repeat 1 21 0 1030 98 0 26 chr15 35752643 35752659 -65627862 - AluJb SINE Alu -163 149 134 2219 84 0 0 chr15 35752659 35752958 -65627563 - AluY SINE Alu -12 299 1 1030 98 0 26 chr15 35752958 35753094 -65627427 - AluJb SINE Alu -178 134 1 783 210 11 28 chr15 35753379 35753555 -65626966 - MER20 DNA MER1_type -1 218 46 475 259 170 0 chr15 35753610 35753757 -65626764 + MER5A DNA MER1_type 16 187 -2 258 244 89 0 chr15 35753833 35753923 -65626598 - MER20B DNA MER1_type -17 202 101 1694 141 99 46 chr15 35754474 35755038 -65625483 - SATR1 Satellite Satellite -138 594 1 299 212 5 58 chr15 35755140 35755329 -65625192 + (TTA)n Simple_repeat Simple_repeat 1 179 0 2407 174 106 2 chr15 35755340 35756318 -65624203 + SATR1 Satellite Satellite 1 1079 0 2436 183 102 7 chr15 35756346 35759520 -65621001 - SATR1 Satellite Satellite -1 3474 1 207 235 13 46 chr15 35759603 35759756 -65620765 + (TTA)n Simple_repeat Simple_repeat 1 148 0 319 222 0 72 chr15 35759773 35759967 -65620554 + (TTA)n Simple_repeat Simple_repeat 1 180 0 212 252 7 43 chr15 35760009 35760148 -65620373 + (TTA)n Simple_repeat Simple_repeat 3 136 0 2018 214 102 14 chr15 35760148 35761810 -65618711 + SATR1 Satellite Satellite 1 1808 0 2027 192 105 5 chr15 35761842 35762858 -65617663 + SATR1 Satellite Satellite 1 1118 -96 315 172 35 0 chr15 35762874 35762932 -65617589 - SATR1 Satellite Satellite -269 201 142 239 71 29 86 chr15 35765187 35765257 -65615264 + (CAGGG)n Simple_repeat Simple_repeat 1 66 0 442 145 21 118 chr15 35765333 35765519 -65615002 + (CAGGG)n Simple_repeat Simple_repeat 1 168 0 348 112 35 88 chr15 35765531 35765701 -65614820 + (CAGGG)n Simple_repeat Simple_repeat 1 161 0 813 151 0 43 chr15 35766739 35766878 -65613643 + FLAM_C SINE Alu 1 133 0 1199 165 15 0 chr15 35767138 35767338 -65613183 + MLT1B LTR MaLR 186 388 -2 397 270 17 9 chr15 35767357 35767472 -65613049 + MIR SINE MIR 145 260 -2 357 232 49 0 chr15 35767545 35767627 -65612894 + L2 LINE L2 2248 2333 -981 15188 19 1 0 chr15 35767627 35769377 -65611144 - L1PA4 LINE L1 -814 5332 3581 6735 40 0 1 chr15 35769377 35770195 -65610326 + L1PA4 LINE L1 5348 6175 0 198 0 0 0 chr15 35770208 35770230 -65610291 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 2489 47 0 0 chr15 35770244 35770543 -65609978 + AluY SINE Alu 1 299 -12 1037 213 92 25 chr15 35770565 35770902 -65609619 + MSTD LTR MaLR 1 396 0 1662 260 92 0 chr15 35770908 35771388 -65609133 + L2 LINE L2 2386 2909 -405 276 269 109 19 chr15 35771396 35771552 -65608969 + L1MCc LINE L1 17 186 -6237 1260 270 98 39 chr15 35772113 35772394 -65608127 + L1MCc LINE L1 1269 1532 -5590 566 39 0 13 chr15 35772394 35772472 -65608049 + (TA)n Simple_repeat Simple_repeat 2 78 0 1260 270 98 39 chr15 35772472 35772751 -65607770 + L1MCc LINE L1 1532 1793 -5329 2209 107 0 0 chr15 35772751 35773049 -65607472 - AluSx SINE Alu -13 299 2 1260 270 98 39 chr15 35773049 35773404 -65607117 + L1MCc LINE L1 1793 2444 -4678 600 182 0 0 chr15 35773416 35773692 -65606829 + FLAM_A SINE Alu 23 298 0 1096 233 66 68 chr15 35773695 35774082 -65606439 + L1MCc LINE L1 2438 2824 -4298 1623 175 0 11 chr15 35774082 35774367 -65606154 + AluJo SINE Alu 1 282 -30 282 56 0 0 chr15 35774372 35774408 -65606113 + (CA)n Simple_repeat Simple_repeat 1 36 0 1096 233 66 68 chr15 35774408 35774456 -65606065 + L1MCc LINE L1 2828 2878 -4244 1772 158 3 13 chr15 35774456 35774754 -65605767 + AluJb SINE Alu 1 295 -17 2842 88 21 75 chr15 35775609 35776077 -65604444 - MLT2A1 LTR ERVL 0 444 2 216 286 104 0 chr15 35776082 35776159 -65604362 - MIR3 SINE MIR 0 208 124 374 271 15 53 chr15 35776547 35776680 -65603841 - MER94 DNA DNA -6 128 1 1489 217 54 41 chr15 35777368 35777759 -65602762 + MSTD LTR MaLR 1 396 0 564 229 19 38 chr15 35778096 35778253 -65602268 + MLT1J LTR MaLR 356 509 -2 804 256 178 20 chr15 35778632 35779082 -65601439 + LTR33 LTR ERVL 1 521 0 638 258 108 31 chr15 35779087 35779471 -65601050 - MLT1L LTR MaLR 0 615 109 335 291 44 89 chr15 35779917 35780075 -65600446 + L2 LINE L2 3101 3251 -21 1535 194 0 7 chr15 35780076 35780386 -65600135 + AluJo SINE Alu 1 308 -4 549 248 102 0 chr15 35780441 35780598 -65599923 + MIR3 SINE MIR 36 208 0 25 31 0 0 chr15 35781547 35781579 -65598942 + AT_rich Low_complexity Low_complexity 1 32 0 1731 176 3 0 chr15 35781702 35782004 -65598517 - AluJb SINE Alu -9 303 1 1783 103 0 109 chr15 35782008 35782207 -65598314 - AluSx SINE Alu -10 302 83 2186 99 3 0 chr15 35782207 35782510 -65598011 - AluSp SINE Alu -9 304 1 2239 94 0 0 chr15 35782512 35782821 -65597700 - AluY SINE Alu -2 309 1 1783 103 0 109 chr15 35782821 35782957 -65597564 - AluSx SINE Alu -230 82 1 216 0 0 0 chr15 35783074 35783098 -65597423 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 797 162 78 0 chr15 35783365 35783507 -65597014 - MER20 DNA MER1_type -1 218 66 447 272 170 0 chr15 35783596 35783743 -65596778 + MER5A DNA MER1_type 16 187 -2 275 230 89 0 chr15 35783819 35783909 -65596612 - MER20B DNA MER1_type -17 202 101 355 326 99 73 chr15 35784738 35785082 -65595439 + L2 LINE L2 2917 3269 -3 192 315 231 0 chr15 35785152 35785260 -65595261 - L2 LINE L2 -2 3311 3179 2139 148 93 23 chr15 35785576 35785974 -65594547 - MSTB LTR MaLR 0 426 1 1916 109 43 0 chr15 35786232 35786508 -65594013 + AluSx SINE Alu 1 288 -24 1955 91 11 0 chr15 35787708 35787973 -65592548 - AluSx SINE Alu -11 301 34 423 225 185 45 chr15 35788791 35788969 -65591552 + MLT1K LTR MaLR 378 580 -8 689 155 6 88 chr15 35789160 35789341 -65591180 + FRAM SINE Alu 10 175 -1 367 255 63 47 chr15 35789524 35789635 -65590886 - MIR SINE MIR -64 144 37 269 289 258 21 chr15 35790497 35790691 -65589830 + MIR SINE MIR 22 261 -1 1779 262 125 31 chr15 35790906 35791782 -65588739 - L2 LINE L2 -37 3276 2329 2203 152 75 0 chr15 35791921 35792293 -65588228 + MER6 DNA MER2_type -7 401 -79 765 154 8 1 chr15 35792293 35792420 -65588101 + FLAM_C SINE Alu 2 126 -17 2649 152 9 13 chr15 35792431 35792879 -65587642 + MER6 DNA MER2_type 402 847 -18 1766 172 7 3 chr15 35793238 35793528 -65586993 - AluJo SINE Alu -20 292 2 869 116 7 43 chr15 35793666 35793804 -65586717 - FLAM_C SINE Alu 0 133 1 22 0 0 0 chr15 35793910 35793932 -65586589 + AT_rich Low_complexity Low_complexity 1 22 0 2028 146 0 10 chr15 35794854 35795155 -65585366 - AluSx SINE Alu -14 298 1 1755 200 123 25 chr15 35795175 35795342 -65585179 - L1ME2 LINE L1 -320 5844 5695 2431 63 0 3 chr15 35795342 35795641 -65584880 - AluY SINE Alu -12 299 2 1755 200 123 25 chr15 35795641 35796003 -65584518 - L1ME2 LINE L1 -469 5695 5263 233 180 40 0 chr15 35796042 35796092 -65584429 - LTR56 LTR ERV1 -59 386 335 1639 201 41 97 chr15 35796092 35796345 -65584176 - L1ME2 LINE L1 -871 5275 5009 2318 67 37 3 chr15 35796345 35796643 -65583878 - AluSq SINE Alu -5 308 1 1639 201 41 97 chr15 35796643 35797088 -65583433 - L1ME2 LINE L1 -1137 5009 4621 2391 100 3 0 chr15 35797088 35797399 -65583122 + AluSp SINE Alu 1 312 -1 1639 201 41 97 chr15 35797399 35797462 -65583059 - L1ME2 LINE L1 -1525 4621 4556 194 337 109 0 chr15 35797520 35797621 -65582900 + L2 LINE L2 2594 2705 -609 683 214 71 0 chr15 35798351 35798505 -65582016 - MIR SINE MIR -88 174 10 2083 147 3 0 chr15 35798609 35798915 -65581606 - AluSx SINE Alu -5 307 1 1880 161 0 3 chr15 35799941 35800239 -65580282 - AluJo SINE Alu -15 297 1 1672 188 10 7 chr15 35800270 35800573 -65579948 + AluJb SINE Alu 3 306 -6 266 108 0 0 chr15 35800790 35800827 -65579694 + Alu SINE Alu 2 38 -264 29 47 0 0 chr15 35800914 35800957 -65579564 + AT_rich Low_complexity Low_complexity 1 43 0 248 256 0 25 chr15 35801094 35801254 -65579267 + (TAAA)n Simple_repeat Simple_repeat 2 157 0 2313 142 50 10 chr15 35801298 35801715 -65578806 - Tigger2a DNA MER2_type 0 434 1 357 329 98 31 chr15 35801717 35801942 -65578579 + L3 LINE CR1 387 626 -951 2273 102 3 37 chr15 35801996 35802319 -65578202 + AluSx SINE Alu 1 312 0 265 227 0 45 chr15 35802319 35802377 -65578144 + L3 LINE CR1 1520 1576 -1 327 221 78 30 chr15 35802478 35802719 -65577802 + MER5C DNA MER1_type 12 322 -2 22 80 0 0 chr15 35803345 35803395 -65577126 + AT_rich Low_complexity Low_complexity 1 50 0 2334 84 0 3 chr15 35803686 35803984 -65576537 + AluSc SINE Alu 1 297 -12 334 301 38 11 chr15 35804135 35804318 -65576203 + L1ME LINE L1 5636 5823 -298 597 133 0 20 chr15 35804324 35804422 -65576099 + FRAM SINE Alu 72 167 -9 201 300 0 0 chr15 35804645 35804695 -65575826 + L2 LINE L2 2687 2736 -578 407 292 0 18 chr15 35804830 35804943 -65575578 + L2 LINE L2 2927 3037 -235 1866 146 0 32 chr15 35804951 35805259 -65575262 - AluJo SINE Alu -14 298 1 30 27 0 0 chr15 35805797 35805834 -65574687 + AT_rich Low_complexity Low_complexity 1 37 0 777 237 56 14 chr15 35805884 35806099 -65574422 - L1ME1 LINE L1 -89 6471 6248 * 2221 196 78 21 chr15 35806094 35806761 -65573760 - L1ME1 LINE L1 -855 5685 4981 3487 215 82 10 chr15 35806786 35807895 -65572626 - L1ME1 LINE L1 -2686 3854 2666 1252 148 13 13 chr15 35807926 35808156 -65572365 - L1MB8 LINE L1 -89 6089 5860 883 126 66 61 chr15 35808198 35808396 -65572125 - L1MB8 LINE L1 -305 5873 5675 369 132 0 15 chr15 35808419 35808487 -65572034 - HY4 scRNA scRNA 0 93 27 3098 214 84 75 chr15 35808490 35808970 -65571551 - L1ME1 LINE L1 -3870 2670 2196 198 0 0 0 chr15 35808970 35808992 -65571529 + (TA)n Simple_repeat Simple_repeat 2 23 0 3098 214 84 75 chr15 35808992 35809250 -65571271 - L1ME1 LINE L1 -4344 2196 1942 2208 116 0 38 chr15 35809250 35809568 -65570953 - AluSx SINE Alu -6 306 1 3098 214 84 75 chr15 35809568 35809639 -65570882 - L1ME1 LINE L1 -4598 1942 1873 2462 77 3 0 chr15 35809639 35809949 -65570572 - AluY SINE Alu 0 311 1 3098 214 84 75 chr15 35809949 35810095 -65570426 - L1ME1 LINE L1 -4667 1873 1730 2313 91 7 0 chr15 35810095 35810392 -65570129 - AluSp SINE Alu -14 299 1 3098 214 84 75 chr15 35810392 35810923 -65569598 - L1ME1 LINE L1 -4810 1730 1200 2181 131 0 0 chr15 35810923 35811221 -65569300 + AluSx SINE Alu 1 298 -14 3098 214 84 75 chr15 35811221 35811583 -65568938 - L1ME1 LINE L1 -5340 1200 843 642 296 50 50 chr15 35811565 35812039 -65568482 - L1ME1 LINE L1 -5573 957 34 * 861 219 32 0 chr15 35813314 35813469 -65567052 - FRAM SINE Alu -15 161 2 420 56 0 0 chr15 35813480 35813534 -65566987 - L1MC1 LINE L1 -15 6318 6265 35 54 0 0 chr15 35813998 35814054 -65566467 + AT_rich Low_complexity Low_complexity 1 56 0 769 109 47 47 chr15 35814752 35814880 -65565641 + AluJo SINE Alu 1 128 -174 2354 79 0 25 chr15 35815429 35815746 -65564775 - AluY SINE Alu -2 309 1 1033 170 6 0 chr15 35815762 35815921 -65564600 + AluJo SINE Alu 134 293 -19 1903 161 26 0 chr15 35815946 35816250 -65564271 + AluJo SINE Alu 1 312 0 2277 85 11 0 chr15 35816380 35816662 -65563859 - AluSg SINE Alu -25 285 1 2075 148 0 0 chr15 35816897 35817200 -65563321 - AluSx SINE Alu -7 305 3 2845 180 24 12 chr15 35817201 35817796 -65562725 - L1MB8 LINE L1 -269 5909 5308 646 131 28 0 chr15 35817797 35817904 -65562617 - Tigger7 DNA MER2_type 0 2487 2378 * 2425 164 95 44 chr15 35817892 35818066 -65562455 - Tigger7 DNA MER2_type -1910 577 413 1636 194 3 28 chr15 35818066 35818385 -65562136 + AluJo SINE Alu 1 311 -1 2425 164 95 44 chr15 35818385 35818631 -65561890 - Tigger7 DNA MER2_type -2074 413 120 2086 137 0 0 chr15 35818631 35818930 -65561591 - AluSx SINE Alu -13 299 1 2425 164 95 44 chr15 35818930 35819056 -65561465 - Tigger7 DNA MER2_type -2367 120 2 3567 182 20 36 chr15 35819057 35819949 -65560572 - L1MB8 LINE L1 -838 5308 4431 4586 182 45 14 chr15 35819954 35820603 -65559918 - L1MC2 LINE L1 -9 6335 5647 1594 197 14 0 chr15 35820603 35820892 -65559629 - AluJo SINE Alu -19 293 1 4586 182 45 14 chr15 35820892 35821183 -65559338 - L1MC2 LINE L1 -697 5647 5366 1187 123 215 58 chr15 35821215 35821369 -65559152 - AluJb SINE Alu 0 302 174 2062 106 53 0 chr15 35821369 35821653 -65558868 + AluSq SINE Alu 1 299 -14 1187 123 215 58 chr15 35821653 35821758 -65558763 - AluJb SINE Alu -128 174 2 1238 229 26 42 chr15 35821791 35822246 -65558275 - L1MB8 LINE L1 -1717 4429 3982 234 351 14 14 chr15 35822247 35822321 -65558200 - MER5A DNA MER1_type -38 151 78 6226 130 7 4 chr15 35822730 35824177 -65556344 - L1PB1 LINE L1 0 6151 4704 256 100 0 4 chr15 35825767 35825852 -65554669 + AluJb SINE Alu 1 117 -185 835 108 0 54 chr15 35825985 35826114 -65554407 - FLAM_C SINE Alu -15 128 7 264 337 27 48 chr15 35826331 35826518 -65554003 + L2 LINE L2 465 647 -2667 729 343 73 25 chr15 35826524 35826554 -65553967 + L2 LINE L2 2782 2809 -504 748 175 32 0 chr15 35826554 35826680 -65553841 + FLAM_A SINE Alu 1 130 -3 729 343 73 25 chr15 35826680 35827131 -65553390 + L2 LINE L2 2809 3290 -23 758 212 121 57 chr15 35829143 35829400 -65551121 + L1MC5 LINE L1 7300 7539 -422 2424 64 0 22 chr15 35829400 35829711 -65550810 - AluY SINE Alu -7 304 1 758 212 121 57 chr15 35829711 35829906 -65550615 + L1MC5 LINE L1 7539 7781 -180 4203 143 42 4 chr15 35830536 35831297 -65549224 + L1MB7 LINE L1 5376 6165 -19 421 188 161 0 chr15 35831763 35831875 -65548646 - L1ME3 LINE L1 -8 6154 6025 213 94 0 0 chr15 35832347 35832379 -65548142 + (TA)n Simple_repeat Simple_repeat 2 33 0 1968 145 3 13 chr15 35832379 35832682 -65547839 - AluJb SINE Alu -12 300 1 2401 80 3 0 chr15 35832687 35832989 -65547532 - AluSq SINE Alu -10 303 1 458 311 70 11 chr15 35833074 35833347 -65547174 + L1ME LINE L1 5460 5748 -373 288 192 0 0 chr15 35834278 35834330 -65546191 - MIR SINE MIR -12 250 199 2317 98 0 0 chr15 35834556 35834852 -65545669 - AluSx SINE Alu -16 296 1 541 194 0 10 chr15 35835064 35835167 -65545354 + AluS SINE Alu 1 102 -211 871 168 0 0 chr15 35835499 35835636 -65544885 + FLAM_C SINE Alu 2 138 -5 312 49 0 0 chr15 35835672 35835713 -65544808 - FRAM/FAM SINE Alu -101 74 34 996 137 0 0 chr15 35835747 35835893 -65544628 + FRAM SINE Alu 1 40 0 29 94 0 0 chr15 35835903 35835988 -65544533 + AT_rich Low_complexity Low_complexity 1 85 0 2263 125 0 0 chr15 35835999 35836296 -65544225 + AluSq SINE Alu 1 297 -16 1650 134 97 0 chr15 35836583 35836852 -65543669 - AluJo SINE Alu -17 295 1 2321 45 0 17 chr15 35836882 35837174 -65543347 + AluY SINE Alu 1 287 -24 574 261 30 49 chr15 35838046 35838249 -65542272 - HAL1 LINE L1 -542 1965 1767 1562 162 40 11 chr15 35838252 35838530 -65541991 - AluJo SINE Alu -8 304 19 908 237 101 58 chr15 35838553 35839561 -65540960 - HAL1 LINE L1 -1009 1498 329 2053 119 0 38 chr15 35839561 35839879 -65540642 - AluSq SINE Alu -7 306 1 908 237 101 58 chr15 35839879 35840148 -65540373 - HAL1 LINE L1 -2178 329 73 300 250 29 29 chr15 35840824 35840928 -65539593 - MIR SINE MIR -12 250 147 2076 133 0 10 chr15 35841280 35841582 -65538939 - AluJb SINE Alu -13 299 1 416 236 39 60 chr15 35842482 35842673 -65537848 - MER20B DNA MER1_type 0 219 33 2191 109 7 14 chr15 35842932 35843226 -65537295 + AluSp SINE Alu 1 292 -21 2450 80 0 0 chr15 35843232 35843533 -65536988 + AluY SINE Alu 1 301 -10 908 143 0 0 chr15 35843542 35843675 -65536846 + FLAM_C SINE Alu 1 133 0 257 299 21 111 chr15 35843675 35843819 -65536702 - MIR3 SINE MIR -25 183 53 201 238 48 12 chr15 35843880 35843903 -65536618 + (CATATA)n Simple_repeat Simple_repeat 3 24 -65 1828 172 3 7 chr15 35843903 35844199 -65536322 + AluJb SINE Alu 3 297 -15 201 238 48 12 chr15 35844199 35844259 -65536262 + (CATATA)n Simple_repeat Simple_repeat 24 89 0 275 0 0 28 chr15 35844281 35844317 -65536204 + (TA)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr15 35844317 35844338 -65536183 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr15 35844630 35844680 -65535841 + AT_rich Low_complexity Low_complexity 1 50 0 379 239 190 43 chr15 35845613 35845797 -65534724 + MIR SINE MIR 26 236 -26 2460 89 0 0 chr15 35846650 35846954 -65533567 - AluSg SINE Alu -6 304 1 670 107 48 0 chr15 35847184 35847287 -65533234 + AluSq/x SINE Alu 1 108 -205 962 216 50 53 chr15 35848042 35848343 -65532178 - AluSq SINE Alu -1 302 3 600 148 123 33 chr15 35848372 35848494 -65532027 + FLAM_A SINE Alu 1 133 0 4706 184 44 14 chr15 35848518 35848821 -65531700 + L1MC2 LINE L1 5354 5646 -698 1611 197 14 0 chr15 35848821 35849110 -65531411 + AluJo SINE Alu 1 293 -19 4706 184 44 14 chr15 35849110 35849759 -65530762 + L1MC2 LINE L1 5646 6335 -9 3628 187 26 36 chr15 35849738 35850656 -65529865 + L1MB8 LINE L1 4400 5308 -838 * 2418 164 95 44 chr15 35850657 35850783 -65529738 + Tigger7 DNA MER2_type 2 120 -2367 2112 137 0 0 chr15 35850783 35851082 -65529439 + AluSx SINE Alu 1 299 -13 2418 164 95 44 chr15 35851082 35851328 -65529193 + Tigger7 DNA MER2_type 120 413 -2074 1667 194 3 28 chr15 35851328 35851647 -65528874 - AluJo SINE Alu -1 311 1 2418 164 95 44 chr15 35851647 35851821 -65528700 + Tigger7 DNA MER2_type 413 577 -1910 651 131 28 0 chr15 35851809 35851916 -65528605 + Tigger7 DNA MER2_type 2382 2491 0 * 3582 177 29 41 chr15 35851917 35852513 -65528008 + L1MB8 LINE L1 5308 5893 -285 2058 148 0 3 chr15 35852513 35852824 -65527697 + AluSx SINE Alu 3 312 0 3582 177 29 41 chr15 35852824 35853048 -65527473 + L1MB8 LINE L1 5893 6118 -60 1071 138 0 25 chr15 35853091 35853251 -65527270 + AluSg SINE Alu 1 156 -154 306 50 0 0 chr15 35853262 35853302 -65527219 - FRAM/FAM SINE Alu -100 75 36 1020 137 0 0 chr15 35853338 35853484 -65527037 + FRAM SINE Alu 1 40 0 29 94 0 0 chr15 35853494 35853579 -65526942 + AT_rich Low_complexity Low_complexity 1 85 0 2294 125 0 0 chr15 35853590 35853887 -65526634 + AluSq SINE Alu 1 297 -16 1921 134 14 20 chr15 35854449 35854741 -65525780 + AluSx SINE Alu 1 290 -22 1521 154 117 4 chr15 35856414 35856680 -65523841 - AluJb SINE Alu -16 296 1 1641 177 10 32 chr15 35857084 35857394 -65523127 + AluJo SINE Alu 1 303 -9 2368 107 7 0 chr15 35858845 35859153 -65521368 + AluSq SINE Alu 1 310 -3 509 256 146 7 chr15 35859191 35859328 -65521193 - MER91A DNA MER1_type -6 190 35 703 201 184 11 chr15 35859605 35859784 -65520737 - AluJo SINE Alu -16 296 87 642 264 50 104 chr15 35859795 35860380 -65520141 + L2 LINE L2 2726 3270 -43 313 337 131 6 chr15 35860533 35860708 -65519813 + L1MC/D LINE L1 5458 5654 -2154 854 137 0 0 chr15 35862290 35862407 -65518114 - AluJb SINE Alu -195 117 1 2321 106 7 0 chr15 35862904 35863205 -65517316 - AluSp SINE Alu -10 303 1 466 257 197 0 chr15 35863345 35863497 -65517024 + MIR SINE MIR 7 188 -74 1784 133 21 53 chr15 35864105 35864208 -65516313 + MER7A DNA MER2_type 10 115 -2923 1719 174 17 13 chr15 35864208 35864507 -65516014 - AluJb SINE Alu -4 308 9 1784 133 21 53 chr15 35864507 35864741 -65515780 + MER7A DNA MER2_type 115 334 -12 196 284 75 0 chr15 35864933 35865000 -65515521 + MIR SINE MIR 116 187 -75 2883 10 0 0 chr15 35865410 35865718 -65514803 - AluYa5 SINE Alu -3 308 1 658 250 30 29 chr15 35865884 35866289 -65514232 - MLT1L LTR MaLR -8 607 111 868 200 0 0 chr15 35866384 35866529 -65513992 + FRAM SINE Alu 1 145 -31 440 260 89 0 chr15 35866629 35866752 -65513769 + MIR SINE MIR 30 163 -99 * 464 298 46 0 chr15 35866738 35866869 -65513652 + L2 LINE L2 3177 3313 0 294 289 0 0 chr15 35866871 35866947 -65513574 + MIR SINE MIR 173 248 -14 1688 147 157 10 chr15 35866994 35867287 -65513234 - MER1B DNA MER1_type -1 336 1 414 290 85 28 chr15 35868008 35868184 -65512337 + MIR SINE MIR 63 248 -14 557 208 246 0 chr15 35868291 35868421 -65512100 - AluJo/FRAM SINE Alu -4 298 137 1446 132 180 0 chr15 35868424 35868674 -65511847 - AluJo SINE Alu -7 295 1 432 283 67 28 chr15 35869970 35870150 -65510371 + MIR3 SINE MIR 16 202 -6 292 120 20 20 chr15 35870188 35870238 -65510283 - L2 LINE L2 0 3272 3223 239 213 0 0 chr15 35870559 35870606 -65509915 + MLT1K LTR MaLR 27 73 -515 2164 96 11 0 chr15 35871309 35871617 -65508904 - AluSx SINE Alu 0 311 1 212 185 19 37 chr15 35871907 35871961 -65508560 + (CATA)n Simple_repeat Simple_repeat 1 53 0 740 262 20 51 chr15 35871981 35872275 -65508246 - L1ME LINE L1 -303 5818 5534 2371 92 3 0 chr15 35872500 35872793 -65507728 - AluSg SINE Alu -16 294 1 575 293 122 9 chr15 35872939 35873161 -65507360 - MIR SINE MIR -1 261 15 234 128 0 0 chr15 35875567 35875606 -65504915 + (T)n Simple_repeat Simple_repeat 1 39 0 216 186 23 0 chr15 35876028 35876071 -65504450 - L2 LINE L2 -4 3268 3225 187 315 87 11 chr15 35877896 35877988 -65502533 - L2 LINE L2 -32 3240 3142 751 271 45 14 chr15 35878331 35878552 -65501969 + MIR SINE MIR 34 261 -1 226 287 87 53 chr15 35878559 35878709 -65501812 - L2 LINE L2 -150 3122 2968 1020 195 5 10 chr15 35879064 35879269 -65501252 + AluSc SINE Alu 1 204 -105 1381 167 0 0 chr15 35880203 35880425 -65500096 - AluSq SINE Alu -91 222 1 391 285 36 36 chr15 35881380 35881545 -65498976 - MIR3 SINE MIR -31 177 13 180 267 13 53 chr15 35882149 35882224 -65498297 - L2 LINE L2 -3011 303 232 189 172 141 62 chr15 35883776 35883840 -65496681 - MIR SINE MIR -99 163 95 180 351 13 13 chr15 35884599 35884676 -65495845 + MIR3 SINE MIR 8 84 -124 1968 163 33 87 chr15 35884681 35885073 -65495448 - MLT1A1 LTR MaLR -3 362 1 626 275 5 26 chr15 35885074 35885263 -65495258 + MIR SINE MIR 78 262 0 341 287 175 28 chr15 35886081 35886224 -65494297 - L3 LINE CR1 -2 1575 1412 26 0 0 0 chr15 35888589 35888615 -65491906 + GC_rich Low_complexity Low_complexity 1 26 0 431 247 93 71 chr15 35889795 35889977 -65490544 + MIR SINE MIR 5 190 -72 308 243 14 14 chr15 35890321 35890395 -65490126 + MIR SINE MIR 46 119 -89 521 240 186 15 chr15 35890400 35890604 -65489917 + MIR SINE MIR 9 247 -15 914 196 0 23 chr15 35891790 35891963 -65488558 + AluJo SINE Alu 124 292 -20 372 269 120 69 chr15 35892339 35892555 -65487966 + MIR SINE MIR 3 229 -33 523 301 95 21 chr15 35893056 35893392 -65487129 - MARNA DNA Mariner -167 419 59 788 246 139 0 chr15 35894062 35894277 -65486244 + MIR SINE MIR 8 252 -10 185 250 0 0 chr15 35894245 35894281 -65486240 + L2 LINE L2 3225 3260 -12 * 556 84 0 0 chr15 35895234 35895305 -65485216 + Alu SINE Alu 3 73 -245 2363 94 0 3 chr15 35896269 35896576 -65483945 + AluSx SINE Alu 1 306 -6 249 312 80 0 chr15 35896576 35896714 -65483807 - L1ME4a LINE L1 0 6121 5973 1343 231 65 97 chr15 35896984 35897656 -65482865 - L1M4 LINE L1 -1110 5036 4343 2422 64 0 0 chr15 35897656 35897953 -65482568 - AluY SINE Alu -14 297 1 1343 231 65 97 chr15 35897953 35898024 -65482497 - L1M4 LINE L1 -1803 4343 4322 2206 88 0 3 chr15 35898024 35898308 -65482213 + AluSc SINE Alu 3 285 -24 1343 231 65 97 chr15 35898308 35898415 -65482106 - L1M4 LINE L1 -1824 4322 4213 1925 109 0 11 chr15 35899009 35899309 -65481212 + AluSx SINE Alu 23 312 0 2058 129 0 7 chr15 35900380 35900682 -65479839 - AluSx SINE Alu -12 300 1 339 301 34 23 chr15 35901017 35901193 -65479328 - L1M4 LINE L1 -2369 3777 3600 331 175 48 97 chr15 35901965 35902068 -65478453 - MER53 DNA DNA 0 189 92 190 227 107 13 chr15 35903726 35903801 -65476720 - MIR SINE MIR -116 146 65 2285 66 0 20 chr15 35904141 35904444 -65476077 + AluY SINE Alu 1 297 -14 644 239 165 0 chr15 35905025 35905213 -65475308 - MER20 DNA MER1_type 0 219 1 242 221 163 23 chr15 35905710 35905796 -65474725 + MIR SINE MIR 163 260 -2 2055 115 0 7 chr15 35905799 35906086 -65474435 - AluSx SINE Alu -27 285 1 23 0 0 0 chr15 35906089 35906112 -65474409 + AT_rich Low_complexity Low_complexity 1 23 0 253 280 174 0 chr15 35907093 35907225 -65473296 + MER5A DNA MER1_type 1 155 -34 276 167 175 63 chr15 35907237 35907363 -65473158 - MIR3 SINE MIR -60 148 9 2308 92 0 3 chr15 35912046 35912349 -65468172 - AluSg SINE Alu -7 303 2 328 157 86 70 chr15 35912364 35912489 -65468032 - MIR SINE MIR -63 145 62 360 0 0 0 chr15 35913515 35913555 -65466966 + (TG)n Simple_repeat Simple_repeat 2 41 0 24 32 0 0 chr15 35918806 35918837 -65461684 + GC_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr15 35919358 35919381 -65461140 + GC_rich Low_complexity Low_complexity 1 23 0 2504 52 7 0 chr15 35921332 35921637 -65458884 + AluSc SINE Alu 1 307 -2 200 111 28 0 chr15 35922241 35922277 -65458244 + T-rich Low_complexity Low_complexity 2 38 0 236 253 116 20 chr15 35923314 35923424 -65457097 - MIR SINE MIR -59 149 42 241 254 262 0 chr15 35925092 35925214 -65455307 - MIR3 SINE MIR -40 168 15 493 284 68 35 chr15 35926139 35926382 -65454139 + MIR SINE MIR 7 258 -4 378 0 0 0 chr15 35926700 35926742 -65453779 + (GA)n Simple_repeat Simple_repeat 2 43 0 270 0 0 0 chr15 35926741 35926771 -65453750 + (TG)n Simple_repeat Simple_repeat 2 31 0 * 207 259 9 43 chr15 35928103 35928219 -65452302 + (CCGCG)n Simple_repeat Simple_repeat 1 112 0 508 265 139 5 chr15 35929276 35929477 -65451044 + MIR SINE MIR 27 259 -3 258 81 0 0 chr15 35933342 35933379 -65447142 + (TCC)n Simple_repeat Simple_repeat 1 37 0 593 275 100 15 chr15 35933958 35934158 -65446363 + L2 LINE L2 3027 3243 -29 183 394 24 16 chr15 35936146 35936273 -65444248 + L3 LINE CR1 649 776 -801 389 203 41 16 chr15 35936342 35936465 -65444056 + L1MB7 LINE L1 2424 2549 -3597 * 660 157 48 0 chr15 35936457 35936604 -65443917 + L1MB7 LINE L1 5100 5253 -893 2604 188 74 11 chr15 35936610 35936836 -65443685 + L1MB7 LINE L1 5297 5507 -677 2088 90 0 0 chr15 35936836 35937104 -65443417 + AluSx SINE Alu 32 299 -13 2604 188 74 11 chr15 35937104 35937527 -65442994 + L1MB7 LINE L1 5507 5987 -197 386 288 150 0 chr15 35938038 35938191 -65442330 + MER91A DNA MER1_type 21 196 0 22 0 0 0 chr15 35938202 35938224 -65442297 + AT_rich Low_complexity Low_complexity 1 22 0 211 337 41 10 chr15 35938239 35938337 -65442184 - L3 LINE CR1 -195 1382 1282 261 83 0 0 chr15 35941547 35941583 -65438938 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1524 62 5 0 chr15 35941951 35942146 -65438375 - L1PA8 LINE L1 0 6172 5977 189 74 0 0 chr15 35944761 35944788 -65435733 + (CCCCCA)n Simple_repeat Simple_repeat 4 30 0 2318 52 7 0 chr15 35945207 35945493 -65435028 + AluY SINE Alu 1 288 -23 26 30 0 0 chr15 35945636 35945669 -65434852 + AT_rich Low_complexity Low_complexity 1 33 0 347 358 20 10 chr15 35945909 35946110 -65434411 - L1ME LINE L1 -462 5659 5457 2266 92 3 0 chr15 35946192 35946496 -65434025 + AluSq SINE Alu 1 305 -8 630 219 118 6 chr15 35947397 35947575 -65432946 + MIR SINE MIR 65 262 0 1424 163 47 47 chr15 35948156 35948456 -65432065 + AluSq SINE Alu 3 302 -1 288 197 0 0 chr15 35949084 35949145 -65431376 + Alu SINE Alu 240 300 0 364 378 70 9 chr15 35949150 35949380 -65431141 + L1M4 LINE L1 5136 5379 -767 2115 89 10 10 chr15 35949384 35949675 -65430846 + AluSg SINE Alu 1 291 -19 1850 151 27 0 chr15 35949799 35950091 -65430430 - AluJo SINE Alu 0 312 13 1009 178 0 22 chr15 35950105 35950290 -65430231 - FRAM SINE Alu 0 176 1 1599 68 0 10 chr15 35950304 35950510 -65430011 + AluY SINE Alu 1 204 -107 217 315 213 0 chr15 35950629 35950756 -65429765 + MIR3 SINE MIR 40 193 -15 736 183 0 29 chr15 35952160 35952297 -65428224 - FLAM_A SINE Alu 0 133 1 980 340 31 3 chr15 35952299 35952658 -65427863 + L3 LINE CR1 636 1004 -573 241 313 45 18 chr15 35952673 35952785 -65427736 - MER5A DNA MER1_type -2 187 73 868 159 8 0 chr15 35952812 35952944 -65427577 - AluJo SINE Alu -169 133 1 207 383 16 55 chr15 35953002 35953185 -65427336 + L3 LINE CR1 1015 1190 -387 2107 121 0 0 chr15 35953248 35953538 -65426983 + AluSx SINE Alu 1 290 -22 803 333 55 19 chr15 35953578 35953998 -65426523 - LTR16A LTR ERVL 0 450 16 1354 314 58 36 chr15 35954320 35955397 -65425124 - HERV16 LTR ERVL -611 5153 4007 1229 133 36 0 chr15 35955397 35955593 -65424928 + AluJb SINE Alu 99 301 -11 1151 332 101 26 chr15 35955763 35956079 -65424442 - HERV16 LTR ERVL -2998 1998 1707 6238 183 44 52 chr15 35956079 35957196 -65423325 + Charlie1a DNA MER1_type 1 1126 -1635 1853 150 7 10 chr15 35957196 35957503 -65423018 + AluJb SINE Alu 2 307 -5 6238 183 44 52 chr15 35957503 35957607 -65422914 + Charlie1a DNA MER1_type 1126 1229 -1532 2280 76 0 0 chr15 35957607 35957884 -65422637 + AluSg SINE Alu 3 279 -31 243 0 0 0 chr15 35957888 35957915 -65422606 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6238 183 44 52 chr15 35957915 35958092 -65422429 + Charlie1a DNA MER1_type 1232 1394 -1367 1607 197 0 14 chr15 35958092 35958382 -65422139 - AluJo SINE Alu -26 286 1 6238 183 44 52 chr15 35958382 35958444 -65422077 + Charlie1a DNA MER1_type 1394 1455 0 1151 332 101 26 chr15 35958444 35959069 -65421452 - HERV16 LTR ERVL -3289 1707 872 564 293 44 36 chr15 35959350 35959599 -65420922 + MIR SINE MIR 1 251 -11 343 378 5 47 chr15 35959608 35959801 -65420720 + L3 LINE CR1 1390 1574 -3 475 305 50 5 chr15 35960000 35960200 -65420321 + L3b LINE CR1 1166 1374 -209 2310 41 6 54 chr15 35960358 35960673 -65419848 - AluY SINE Alu -10 301 2 378 0 0 0 chr15 35961019 35961061 -65419460 + (TG)n Simple_repeat Simple_repeat 2 43 0 189 158 32 32 chr15 35962513 35962608 -65417913 + (CGG)n Simple_repeat Simple_repeat 2 96 0 24 53 0 0 chr15 35962763 35962801 -65417720 + GC_rich Low_complexity Low_complexity 1 38 0 31 58 0 0 chr15 35962989 35963041 -65417480 + GC_rich Low_complexity Low_complexity 1 52 0 185 280 252 9 chr15 35967519 35967626 -65412895 + L2 LINE L2 3171 3303 -10 773 193 42 18 chr15 35969020 35969186 -65411335 + MER5A DNA MER1_type 20 189 0 296 132 0 19 chr15 35970530 35970583 -65409938 - L2 LINE L2 -1 3271 3220 512 65 130 0 chr15 35970633 35970710 -65409811 - 5S rRNA rRNA -34 87 1 565 339 39 0 chr15 35970729 35970909 -65409612 - MIR SINE MIR -74 188 2 213 225 36 108 chr15 35972282 35972347 -65408174 + MER5A DNA MER1_type 9 64 -125 1972 144 7 7 chr15 35972347 35972652 -65407869 + AluJb SINE Alu 1 305 -7 213 225 36 108 chr15 35972652 35972697 -65407824 + MER5A DNA MER1_type 64 111 -78 332 282 109 0 chr15 35976012 35976122 -65404399 + MIR3 SINE MIR 33 154 -54 217 264 14 28 chr15 35976285 35976357 -65404164 + MIR3 SINE MIR 117 187 -21 448 212 44 26 chr15 35977109 35977222 -65403299 + MIR SINE MIR 70 184 -78 7837 115 21 24 chr15 35980489 35981267 -65399254 + Tigger3b DNA MER2_type 1 776 -2252 1820 173 7 0 chr15 35981267 35981568 -65398953 - AluJo SINE Alu -9 303 1 7837 115 21 24 chr15 35981568 35982022 -65398499 + Tigger3b DNA MER2_type 776 1230 -1 284 341 73 17 chr15 35983375 35983554 -65396967 + L2 LINE L2 3079 3267 -5 355 308 24 53 chr15 35983911 35984080 -65396441 - MIR3 SINE MIR -35 173 10 246 287 233 33 chr15 35984570 35984720 -65395801 + MIR SINE MIR 65 244 -18 550 202 28 0 chr15 35986849 35986958 -65393563 - MER81 DNA DNA -1 113 2 324 333 54 30 chr15 35988582 35988750 -65391771 + MIR SINE MIR 20 191 -71 2158 135 0 0 chr15 35988910 35989222 -65391299 + AluSx SINE Alu 1 312 0 192 77 0 0 chr15 35989236 35989262 -65391259 + (GGAA)n Simple_repeat Simple_repeat 4 29 0 251 350 83 17 chr15 35989675 35989795 -65390726 + MIR SINE MIR 125 252 -10 360 0 0 0 chr15 35989909 35989949 -65390572 + (CA)n Simple_repeat Simple_repeat 1 40 0 1494 144 79 40 chr15 35990704 35990810 -65389711 + AluJb SINE Alu 1 101 -211 2221 106 0 0 chr15 35990810 35991103 -65389418 - AluSx SINE Alu -19 293 1 1494 144 79 40 chr15 35991103 35991274 -65389247 + AluJb SINE Alu 101 289 -23 333 0 0 0 chr15 35992177 35992214 -65388307 + (TG)n Simple_repeat Simple_repeat 1 37 0 184 222 0 0 chr15 35993112 35993148 -65387373 - MIR SINE MIR -135 73 38 231 346 15 31 chr15 35995893 35996023 -65384498 + L2 LINE L2 2956 3083 -189 321 105 18 0 chr15 35996621 35996678 -65383843 + L1PA16 LINE L1 6092 6149 -17 244 133 0 0 chr15 35996678 35996728 -65383793 - Tigger3(Golem) DNA MER2_type -487 2542 2493 372 43 0 0 chr15 35997300 35997346 -65383175 + (CCG)n Simple_repeat Simple_repeat 3 48 0 183 80 0 0 chr15 35997399 35997424 -65383097 + (CAG)n Simple_repeat Simple_repeat 1 25 0 408 360 28 6 chr15 36000467 36000645 -65379876 - MIR SINE MIR -22 240 59 223 263 67 115 chr15 36001308 36001517 -65379004 + L2 LINE L2 3023 3221 -51 * 1082 266 67 29 chr15 36001514 36001890 -65378631 - L2 LINE L2 -3 3310 2921 284 233 78 41 chr15 36001937 36002088 -65378433 + MIR3 SINE MIR 4 198 -64 2386 72 0 29 chr15 36002088 36002395 -65378126 + AluY SINE Alu 1 298 -13 284 233 78 41 chr15 36002395 36002430 -65378091 + MIR3 SINE MIR 198 230 -32 210 235 59 0 chr15 36002416 36002467 -65378054 + L2 LINE L2 3209 3262 -10 * 712 302 17 0 chr15 36005275 36005510 -65375011 + MIR SINE MIR 15 253 -9 299 143 186 14 chr15 36005530 36005600 -65374921 - MIR SINE MIR -111 97 16 25 65 0 0 chr15 36007135 36007181 -65373340 + GC_rich Low_complexity Low_complexity 1 46 0 268 295 39 0 chr15 36010198 36010276 -65370245 - MIR SINE MIR -63 145 65 313 349 58 50 chr15 36010811 36011069 -65369452 - L2 LINE L2 -10 3262 3003 193 254 36 0 chr15 36011060 36011115 -65369406 - MIR3 SINE MIR -3 205 149 * 2219 129 0 0 chr15 36012487 36012790 -65367731 + AluSx SINE Alu 1 303 -9 2536 62 3 0 chr15 36012790 36013081 -65367440 + AluY SINE Alu 1 293 -18 617 62 0 0 chr15 36013275 36013355 -65367166 - AluSg/x SINE Alu -12 297 218 1059 64 14 43 chr15 36013355 36013495 -65367026 - AluY SINE Alu -175 136 1 2461 85 0 0 chr15 36013679 36013974 -65366547 - AluY SINE Alu -16 295 1 425 324 77 45 chr15 36014406 36014742 -65365779 + L2 LINE L2 1171 1517 -1797 617 276 58 17 chr15 36014781 36015082 -65365439 + Charlie2 DNA MER1_type 1 343 -2519 45 45 0 0 chr15 36015179 36015245 -65365276 + AT_rich Low_complexity Low_complexity 1 66 0 1703 171 3 75 chr15 36015258 36015403 -65365118 + AluJo SINE Alu 6 117 -195 2398 103 0 0 chr15 36015403 36015715 -65364806 + AluSx SINE Alu 1 312 0 1703 171 3 75 chr15 36015715 36015891 -65364630 + AluJo SINE Alu 117 304 -8 748 204 27 11 chr15 36015922 36016108 -65364413 + Charlie2a DNA MER1_type 1467 1655 -1207 2425 59 35 0 chr15 36016108 36016396 -65364125 + AluY SINE Alu 1 298 -13 3180 239 78 13 chr15 36016399 36017383 -65363138 + L1MEc LINE L1 15 1062 -5334 647 179 21 0 chr15 36017447 36017587 -65362934 + L1MA10 LINE L1 6188 6330 -4 388 227 21 0 chr15 36017602 36017699 -65362822 + L1MD1 LINE L1 6136 6234 -8 489 209 36 0 chr15 36017704 36017843 -65362678 + L1MEc LINE L1 1030 1173 -5223 2491 97 0 0 chr15 36017863 36018174 -65362347 + AluSx SINE Alu 1 311 -1 2001 147 3 3 chr15 36018196 36018495 -65362026 + AluJo SINE Alu 1 299 -13 962 201 0 22 chr15 36018564 36018743 -65361778 + FAM SINE Alu 1 175 0 986 275 80 111 chr15 36018858 36019406 -65361115 + L2 LINE L2 1606 2170 -1144 2215 122 10 6 chr15 36019406 36019717 -65360804 - AluSx SINE Alu 0 312 1 507 48 0 0 chr15 36019720 36019783 -65360738 - AluSq/x SINE Alu -179 133 71 986 275 80 111 chr15 36019783 36019960 -65360561 + L2 LINE L2 2172 2372 -942 2400 88 7 3 chr15 36020021 36020326 -65360195 + AluSx SINE Alu 1 306 -6 1768 150 64 0 chr15 36020352 36020646 -65359875 + AluJo SINE Alu 1 311 0 401 310 102 48 chr15 36020654 36020985 -65359536 + L2 LINE L2 2719 3121 -192 1699 176 17 7 chr15 36020985 36021280 -65359241 - AluJb SINE Alu -14 298 1 401 310 102 48 chr15 36021280 36021482 -65359039 + L2 LINE L2 3121 3311 -2 2546 41 0 3 chr15 36023158 36023451 -65357070 + AluY SINE Alu 1 292 -19 362 231 0 13 chr15 36024596 36024674 -65355847 - L2 LINE L2 -1 3271 3195 1488 159 103 11 chr15 36025036 36025307 -65355214 + AluJo SINE Alu 1 296 -16 240 377 18 18 chr15 36026314 36026428 -65354093 + MER5B DNA MER1_type 2 115 -63 2064 149 0 0 chr15 36026792 36027088 -65353433 + AluSx SINE Alu 1 296 -16 3470 96 10 25 chr15 36027151 36027486 -65353035 - MER9 LTR ERVK 0 511 185 2250 79 24 3 chr15 36027486 36027776 -65352745 + AluY SINE Alu 1 296 -15 3470 96 10 25 chr15 36027776 36027959 -65352562 - MER9 LTR ERVK -326 185 1 388 291 55 30 chr15 36028009 36028174 -65352347 - MIR SINE MIR -36 226 58 2275 98 0 16 chr15 36028210 36028515 -65352006 - AluSp SINE Alu -11 302 3 2201 141 0 0 chr15 36029683 36029981 -65350540 - AluSx SINE Alu -14 298 1 23 33 0 0 chr15 36030003 36030033 -65350488 + AT_rich Low_complexity Low_complexity 1 30 0 670 142 115 0 chr15 36030034 36030147 -65350374 - FLAM_A SINE Alu -7 126 1 471 161 124 15 chr15 36031170 36031253 -65349268 - L1MD3 LINE L1 -1 7994 7921 1220 71 35 0 chr15 36031253 36031423 -65349098 - L1PA11 LINE L1 0 6174 5999 471 161 124 15 chr15 36031423 36031476 -65349045 - L1MD3 LINE L1 -74 7921 7843 1432 155 0 14 chr15 36031476 36031689 -65348832 + AluJo SINE Alu 3 212 -100 2174 121 0 0 chr15 36031695 36031977 -65348544 - AluSq SINE Alu -30 283 2 298 194 19 29 chr15 36031986 36032089 -65348432 - L1MD3 LINE L1 -129 7866 7765 2352 93 0 7 chr15 36033570 36033870 -65346651 - AluSc SINE Alu -11 298 1 1652 110 121 43 chr15 36033870 36034151 -65346370 - AluSx SINE Alu -9 303 1 928 123 0 29 chr15 36034151 36034289 -65346232 - AluSq/x SINE Alu -179 134 1 2212 130 0 0 chr15 36034724 36035017 -65345504 + AluSg SINE Alu 1 293 -17 192 269 144 19 chr15 36035031 36035135 -65345386 + MIR SINE MIR 146 262 0 834 137 166 52 chr15 36035462 36035649 -65344872 + L1MB4 LINE L1 5917 6133 -47 2285 85 7 0 chr15 36035649 36035970 -65344551 + AluSq SINE Alu 1 323 0 834 137 166 52 chr15 36035970 36035992 -65344529 + L1MB4 LINE L1 6133 6151 -29 236 167 50 0 chr15 36036099 36036159 -65344362 - L1ME2 LINE L1 -202 5962 5900 1888 134 14 21 chr15 36036159 36036450 -65344071 - AluJo SINE Alu -23 289 1 432 174 0 10 chr15 36036475 36036573 -65343948 + FLAM_C SINE Alu 45 141 -2 1085 179 167 48 chr15 36036573 36036824 -65343697 - AluJo SINE Alu -31 281 1 230 222 125 0 chr15 36036825 36036897 -65343624 - L1ME2 LINE L1 -254 5908 5828 397 209 246 0 chr15 36036954 36037064 -65343457 - L1ME2 LINE L1 -505 5659 5523 1402 186 12 16 chr15 36037100 36037347 -65343174 + AluJo SINE Alu 1 246 -66 1013 263 39 11 chr15 36037359 36037723 -65342798 - LTR43 LTR ERV1 -53 477 176 294 130 0 0 chr15 36037922 36037968 -65342553 + AluJo SINE Alu 243 288 -14 2406 171 8 59 chr15 36037972 36038480 -65342041 - L1MD3 LINE L1 -6 7989 7508 2075 134 130 54 chr15 36038480 36038904 -65341617 + LTR12 LTR ERV1 9 464 -250 609 171 0 0 chr15 36038912 36039024 -65341497 - L1MD3 LINE L1 -472 7510 7202 228 178 110 14 chr15 36039026 36039099 -65341422 - MLT1F1 LTR MaLR -435 132 53 302 200 0 0 chr15 36039102 36039162 -65341359 - L1MD3 LINE L1 -883 7112 7053 1917 164 13 10 chr15 36039191 36039502 -65341019 - AluSx SINE Alu 0 312 1 1306 127 148 8 chr15 36039521 36039758 -65340763 - L1PA15 LINE L1 -2 6163 5894 2424 51 0 0 chr15 36039873 36040148 -65340373 - AluY SINE Alu -34 277 3 627 147 0 20 chr15 36040201 36040303 -65340218 + FLAM_A SINE Alu 20 119 -23 759 253 89 0 chr15 36040355 36040592 -65339929 - MIR SINE MIR -4 258 1 816 215 83 81 chr15 36040814 36040896 -65339625 - L1M4 LINE L1 -2457 3689 3609 2244 52 16 55 chr15 36040896 36041205 -65339316 - AluY SINE Alu -5 306 10 816 215 83 81 chr15 36041205 36041251 -65339270 - L1M4 LINE L1 -2537 3609 3565 2460 70 0 10 chr15 36041251 36041564 -65338957 - AluSg SINE Alu 0 310 1 816 215 83 81 chr15 36041564 36041900 -65338621 - L1M4 LINE L1 -2581 3565 3220 691 204 0 8 chr15 36041900 36042032 -65338489 - FLAM_A SINE Alu -2 131 1 816 215 83 81 chr15 36042032 36042045 -65338476 - L1M4 LINE L1 -2926 3220 3209 1753 197 3 3 chr15 36042047 36042357 -65338164 - AluJo SINE Alu -2 310 1 234 316 11 21 chr15 36042358 36042453 -65338068 + L2 LINE L2 2302 2395 -919 318 262 84 0 chr15 36042510 36042617 -65337904 + L1MC4a LINE L1 5319 5434 -2374 * 320 279 18 0 chr15 36042597 36042708 -65337813 + L1MC4a LINE L1 5771 5883 -1925 1474 135 38 110 chr15 36042778 36043097 -65337424 + AluJo SINE Alu 6 301 -11 2528 69 0 0 chr15 36043132 36043435 -65337086 + AluY SINE Alu 1 303 -8 443 291 39 22 chr15 36043560 36043742 -65336779 - MIR SINE MIR -31 231 47 723 140 0 0 chr15 36043781 36043888 -65336633 + FLAM_C SINE Alu 2 108 -35 28 0 0 0 chr15 36043915 36043943 -65336578 + AT_rich Low_complexity Low_complexity 1 28 0 728 161 8 0 chr15 36044149 36044273 -65336248 - FLAM_C SINE Alu -17 126 2 534 180 0 0 chr15 36044349 36044438 -65336083 + Tigger5 DNA MER2_type 1 89 -2234 * 1195 142 38 46 chr15 36044434 36044578 -65335943 + Tigger5 DNA MER2_type 2085 2228 -95 2419 99 0 0 chr15 36044578 36044880 -65335641 - AluSp SINE Alu -11 302 1 1195 142 38 46 chr15 36044880 36044975 -65335546 + Tigger5 DNA MER2_type 2228 2322 -1 917 129 8 8 chr15 36046234 36046366 -65334155 + AluJo SINE Alu 1 132 -180 2580 74 3 0 chr15 36046575 36046885 -65333636 - AluSp SINE Alu -2 311 1 308 295 112 50 chr15 36046931 36047209 -65333312 - L2 LINE L2 -374 2940 2646 2180 93 7 0 chr15 36048389 36048680 -65331841 + AluSp SINE Alu 1 293 -20 911 211 0 0 chr15 36048969 36049144 -65331377 + AluJo SINE Alu 131 305 -7 2464 62 3 0 chr15 36049549 36049855 -65330666 - AluY SINE Alu -4 307 1 1095 117 0 6 chr15 36053384 36053577 -65326944 - AluSg/x SINE Alu 0 312 134 2009 100 20 17 chr15 36053578 36053878 -65326643 - AluSq SINE Alu -12 301 1 1834 105 86 0 chr15 36057085 36057352 -65323169 + AluSx SINE Alu 1 290 -22 2135 120 0 13 chr15 36057565 36057873 -65322648 + AluSq SINE Alu 1 304 -9 2207 88 17 0 chr15 36057873 36058168 -65322353 + AluSx SINE Alu 1 300 -12 2308 185 50 4 chr15 36058170 36058625 -65321896 + MER44D DNA MER2_type 75 605 0 342 136 0 17 chr15 36059398 36059457 -65321064 + Tigger4(Zombi) DNA MER2_type 2673 2730 -1 2028 121 10 10 chr15 36059498 36059805 -65320716 + AluSq SINE Alu 1 307 -6 2041 137 0 0 chr15 36059876 36060175 -65320346 + AluSx SINE Alu 1 299 -13 2200 97 0 0 chr15 36060177 36060465 -65320056 + AluSg1 SINE Alu 1 288 -21 2157 92 3 13 chr15 36060467 36060771 -65319750 + AluSg SINE Alu 1 301 -9 233 310 97 26 chr15 36062187 36062342 -65318179 + MER5A DNA MER1_type 6 171 -18 2498 41 0 0 chr15 36062938 36063230 -65317291 - AluY SINE Alu -19 292 1 2336 103 0 0 chr15 36063239 36063551 -65316970 - AluSx SINE Alu 0 312 1 1496 120 30 86 chr15 36063562 36063890 -65316631 - AluJb SINE Alu 0 311 1 304 301 87 24 chr15 36063895 36064101 -65316420 - HAL1 LINE L1 -4 2503 2285 2149 107 0 7 chr15 36064112 36064411 -65316110 - AluSg SINE Alu -13 297 1 366 364 71 23 chr15 36065056 36065364 -65315157 + L2 LINE L2 2991 3313 0 207 277 181 48 chr15 36065373 36065539 -65314982 + L2 LINE L2 3125 3312 -1 266 284 183 12 chr15 36065812 36065981 -65314540 - L1ME3A LINE L1 -8 6162 5965 243 0 0 0 chr15 36066092 36066119 -65314402 + (TA)n Simple_repeat Simple_repeat 1 27 0 1305 176 81 15 chr15 36066179 36066440 -65314081 - AluJb SINE Alu 0 312 35 1563 151 51 34 chr15 36066464 36066756 -65313765 - AluJb SINE Alu -15 297 1 857 298 25 8 chr15 36066756 36066907 -65313614 - L1ME3A LINE L1 -313 5808 5695 2247 101 3 0 chr15 36066907 36067214 -65313307 + AluSq SINE Alu 1 308 -5 857 298 25 8 chr15 36067214 36067383 -65313138 - L1ME3A LINE L1 -426 5695 5530 217 315 11 11 chr15 36067516 36067605 -65312916 - L2 LINE L2 -9 3263 3175 2330 87 0 0 chr15 36068552 36068852 -65311669 + AluSx SINE Alu 2 301 -11 234 214 79 90 chr15 36070166 36070255 -65310266 + L2 LINE L2 3223 3310 -3 249 316 68 45 chr15 36070843 36070976 -65309545 - L2 LINE L2 -3 3269 3134 229 296 71 75 chr15 36071115 36071423 -65309098 - L2 LINE L2 -633 2681 2375 826 142 0 8 chr15 36071804 36071938 -65308583 - FLAM_C SINE Alu 0 133 1 554 203 65 0 chr15 36071938 36072061 -65308460 + MIR SINE MIR 63 193 -69 2157 85 0 0 chr15 36072068 36072349 -65308172 + AluY SINE Alu 1 281 -30 1715 161 71 0 chr15 36072687 36072967 -65307554 - AluSx SINE Alu -12 300 1 182 300 29 43 chr15 36073714 36073784 -65306737 - MIR SINE MIR -1 261 193 396 237 72 36 chr15 36073939 36074078 -65306443 + MIR SINE MIR 69 212 -50 197 297 16 16 chr15 36074455 36074519 -65306002 - L2 LINE L2 -4 3268 3205 702 346 27 12 chr15 36074758 36075093 -65305428 - MER102b DNA MER1_type 0 341 2 338 319 35 0 chr15 36075727 36075843 -65304678 + MIR SINE MIR 81 200 -62 419 315 156 44 chr15 36081828 36082450 -65298071 + L1M4c LINE L1 807 1578 -1165 23 0 0 0 chr15 36082563 36082586 -65297935 + GC_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr15 36082661 36082711 -65297810 + GC_rich Low_complexity Low_complexity 1 50 0 27 100 0 0 chr15 36082989 36083079 -65297442 + GC_rich Low_complexity Low_complexity 1 90 0 24 32 0 0 chr15 36083148 36083179 -65297342 + GC_rich Low_complexity Low_complexity 1 31 0 29 0 0 0 chr15 36083204 36083233 -65297288 + GC_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr15 36083310 36083333 -65297188 + GC_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr15 36083746 36083770 -65296751 + GC_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr15 36085556 36085578 -65294943 + (TG)n Simple_repeat Simple_repeat 1 22 0 216 0 0 0 chr15 36086703 36086727 -65293794 + (A)n Simple_repeat Simple_repeat 1 24 0 281 359 57 28 chr15 36088694 36088732 -65291789 + L3b LINE CR1 1119 1154 -429 1932 123 32 0 chr15 36088732 36089070 -65291451 + AluSx SINE Alu 1 312 0 281 359 57 28 chr15 36089070 36089279 -65291242 + L3b LINE CR1 1154 1373 -210 186 43 0 0 chr15 36089349 36089372 -65291149 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2267 66 21 3 chr15 36089424 36089712 -65290809 + AluSc SINE Alu 1 293 -16 1229 176 97 11 chr15 36090004 36090271 -65290250 - AluJb SINE Alu -18 294 5 1841 82 114 39 chr15 36090291 36090572 -65289949 - AluSp SINE Alu -11 302 1 449 320 39 0 chr15 36090578 36090731 -65289790 + MIR SINE MIR 104 262 0 2035 126 0 46 chr15 36090974 36091300 -65289221 + AluJo SINE Alu 1 311 -1 195 284 0 74 chr15 36091570 36091651 -65288870 - L2 LINE L2 -86 3227 3153 2294 85 0 22 chr15 36092312 36092629 -65287892 + AluSq SINE Alu 1 310 -3 331 287 183 30 chr15 36092953 36093117 -65287404 - MIR SINE MIR -6 256 68 193 328 205 8 chr15 36094580 36094702 -65285819 - MIR SINE MIR -81 181 36 1577 149 30 98 chr15 36095124 36095459 -65285062 + AluJb SINE Alu 1 312 0 1898 125 0 21 chr15 36097423 36097733 -65282788 - AluY SINE Alu 0 305 2 2214 70 46 20 chr15 36099184 36099486 -65281035 + AluY SINE Alu 1 310 -1 254 135 0 0 chr15 36102439 36102476 -65278045 - MIR SINE MIR -28 234 198 812 208 49 6 chr15 36102487 36102670 -65277851 + MIR SINE MIR 7 197 -65 329 250 182 0 chr15 36102700 36102788 -65277733 - MIR SINE MIR -149 113 10 2242 111 0 7 chr15 36102812 36103109 -65277412 + AluSx SINE Alu 1 295 -17 1408 187 87 14 chr15 36104167 36104456 -65276065 + AluJo SINE Alu 1 310 -2 1784 164 17 27 chr15 36104476 36104775 -65275746 + AluJo SINE Alu 1 296 -16 599 259 18 62 chr15 36104781 36105005 -65275516 - MIR SINE MIR -3 259 46 1678 167 51 0 chr15 36110022 36110298 -65270223 + AluJb SINE Alu 9 298 -14 217 298 83 0 chr15 36110658 36110742 -65269779 - MIR SINE MIR -83 179 89 339 313 17 0 chr15 36111377 36111492 -65269029 + MIR SINE MIR 98 214 -48 35 63 0 0 chr15 36112347 36112410 -65268111 + GC_rich Low_complexity Low_complexity 1 63 0 27 49 0 0 chr15 36112455 36112496 -65268025 + GC_rich Low_complexity Low_complexity 1 41 0 2320 100 16 13 chr15 36114968 36115279 -65265242 - AluSx SINE Alu 0 312 1 193 301 41 14 chr15 36115907 36115980 -65264541 + MIR SINE MIR 107 181 -81 411 191 95 19 chr15 36116363 36116468 -65264053 - MIR SINE MIR -62 200 88 228 35 0 0 chr15 36117144 36117173 -65263348 + (TCTCCC)n Simple_repeat Simple_repeat 3 31 0 2300 95 0 26 chr15 36117175 36117479 -65263042 - AluSg SINE Alu -13 297 2 1410 148 36 14 chr15 36117989 36118212 -65262309 - AluJb SINE Alu 0 312 85 386 263 226 0 chr15 36118335 36118468 -65262053 - MIR SINE MIR -52 210 48 2370 150 21 7 chr15 36118494 36118920 -65261601 - L1PA15 LINE L1 -2 6163 5732 1084 265 112 18 chr15 36119143 36119535 -65260986 - LTR16B LTR ERVL -2 462 34 2270 120 7 0 chr15 36119765 36120074 -65260447 - AluSx SINE Alu -1 311 1 2479 80 0 13 chr15 36121047 36121358 -65259163 - AluY SINE Alu -4 307 1 649 180 0 16 chr15 36122810 36122821 -65257700 - FLAM_A SINE Alu -185 126 116 3434 141 40 11 chr15 36122821 36123480 -65257041 - L1MB1 LINE L1 0 6168 5491 649 180 0 16 chr15 36123480 36123596 -65256925 - FLAM_A SINE Alu -195 116 1 3383 194 50 6 chr15 36123611 36124458 -65256063 - L1MB1 LINE L1 -678 5493 4604 423 132 26 0 chr15 36124727 36124803 -65255718 - AluJ/FRAM SINE Alu -7 305 228 2381 104 0 0 chr15 36124804 36125111 -65255410 - AluSc SINE Alu -2 307 1 719 181 13 40 chr15 36125111 36125260 -65255261 - AluJo SINE Alu -166 146 2 1845 149 20 14 chr15 36125522 36125817 -65254704 - AluJo SINE Alu -5 307 11 2278 126 0 3 chr15 36125836 36126138 -65254383 - AluSx SINE Alu -11 301 1 2101 94 56 7 chr15 36126149 36126436 -65254085 - AluY SINE Alu -10 301 1 23 33 0 0 chr15 36126612 36126642 -65253879 + AT_rich Low_complexity Low_complexity 1 30 0 250 269 58 83 chr15 36127088 36127244 -65253277 + MER103 DNA DNA 8 159 -7 343 118 0 0 chr15 36127369 36127420 -65253101 - AluSg/x SINE Alu -176 124 74 1621 164 39 4 chr15 36127436 36127716 -65252805 - AluJb SINE Alu -9 303 14 1958 210 82 6 chr15 36127775 36128265 -65252256 + L1M3f LINE L1 1 527 -4801 1487 155 109 21 chr15 36128415 36128699 -65251822 + AluSq SINE Alu 1 309 -4 816 186 51 6 chr15 36128738 36128894 -65251627 + AluSg/x SINE Alu 127 289 -21 2477 61 0 0 chr15 36128899 36129193 -65251328 + AluY SINE Alu 1 294 -17 1179 150 24 29 chr15 36129235 36129442 -65251079 - AluJo SINE Alu -92 220 15 2023 217 83 6 chr15 36129504 36130033 -65250488 + L1M3f LINE L1 3 572 -4756 1552 150 108 21 chr15 36130150 36130437 -65250084 + AluSx SINE Alu 1 312 0 711 170 35 70 chr15 36130470 36130641 -65249880 + AluJb SINE Alu 129 293 -19 1193 107 17 120 chr15 36130682 36130915 -65249606 - AluJo SINE Alu -91 221 13 1640 208 45 95 chr15 36130972 36131438 -65249083 + L1M3f LINE L1 4 475 -4853 258 77 0 0 chr15 36131438 36131477 -65249044 + AluS SINE Alu 54 92 -210 1640 208 45 95 chr15 36131477 36131573 -65248948 + L1M3f LINE L1 475 574 -4754 2329 88 3 0 chr15 36131708 36132003 -65248518 + AluSx SINE Alu 1 296 -16 1751 166 10 10 chr15 36132094 36132401 -65248120 + AluJb SINE Alu 5 311 -1 2338 90 7 0 chr15 36132422 36132723 -65247798 - AluSp SINE Alu -10 303 1 382 285 36 22 chr15 36132938 36133075 -65247446 + MIR SINE MIR 7 145 -117 1620 218 65 65 chr15 36133240 36133759 -65246762 + MLT2B1 LTR ERVL 1 519 -1 1505 189 15 11 chr15 36133759 36133904 -65246617 - AluJb SINE Alu -31 281 138 234 0 0 0 chr15 36133904 36133930 -65246591 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1324 203 7 43 chr15 36133938 36134082 -65246439 + AluJb SINE Alu 1 130 -182 486 0 0 0 chr15 36134082 36134136 -65246385 + (TA)n Simple_repeat Simple_repeat 2 55 0 1324 203 7 43 chr15 36134136 36134292 -65246229 + AluJb SINE Alu 130 290 -22 1505 189 15 11 chr15 36134292 36134407 -65246114 - AluJb SINE Alu -180 132 11 993 328 64 31 chr15 36135529 36135936 -65244585 + L2 LINE L2 1773 2206 -1108 1515 188 12 59 chr15 36135936 36136256 -65244265 - AluJo SINE Alu -7 305 1 993 328 64 31 chr15 36136256 36136430 -65244091 + L2 LINE L2 2206 2373 -941 1304 148 31 4 chr15 36136455 36136684 -65243837 - MSTB LTR MaLR 0 426 192 2389 98 3 7 chr15 36136684 36136989 -65243532 - AluSc SINE Alu -5 304 1 378 341 109 16 chr15 36136990 36137643 -65242878 + L2 LINE L2 2376 3096 -176 1962 149 3 19 chr15 36137876 36138184 -65242337 + AluJo SINE Alu 1 303 -9 2703 52 0 0 chr15 36138377 36138682 -65241839 + AluY SINE Alu 1 305 -6 2343 93 0 0 chr15 36139352 36139642 -65240879 - AluSx SINE Alu -22 290 1 443 288 60 90 chr15 36139838 36140105 -65240416 + L2 LINE L2 3014 3272 0 612 268 38 24 chr15 36140848 36140948 -65239573 - MIR SINE MIR -3 259 162 1637 190 23 16 chr15 36140948 36141123 -65239398 - AluJo SINE Alu 0 312 133 2371 104 0 13 chr15 36141123 36141431 -65239090 - AluSx SINE Alu -8 304 1 1637 190 23 16 chr15 36141431 36141565 -65238956 - AluJo SINE Alu -179 133 1 612 268 38 24 chr15 36141565 36141673 -65238848 - MIR SINE MIR -100 162 48 200 292 192 0 chr15 36141724 36141854 -65238667 + MIR SINE MIR 37 191 -71 1692 128 42 3 chr15 36141877 36142189 -65238332 + MER33 DNA MER1_type 1 324 0 352 294 85 17 chr15 36142695 36142872 -65237649 - L3 LINE CR1 -770 807 619 562 256 114 68 chr15 36143011 36143255 -65237266 - MLT1J2 LTR MaLR -11 439 173 2389 95 0 0 chr15 36143255 36143551 -65236970 - AluSg SINE Alu -14 296 1 562 256 114 68 chr15 36143551 36143657 -65236864 - MLT1J2 LTR MaLR -277 173 73 2208 119 0 7 chr15 36143752 36144055 -65236466 - AluSx SINE Alu -11 301 1 201 242 48 48 chr15 36144627 36144689 -65235832 + L2 LINE L2 3201 3262 -10 1946 125 0 38 chr15 36145013 36145302 -65235219 + AluJb SINE Alu 14 291 -21 2357 81 7 0 chr15 36145432 36145717 -65234804 + AluSx SINE Alu 3 289 -23 195 235 0 0 chr15 36145717 36145768 -65234753 + (TA)n Simple_repeat Simple_repeat 2 52 0 2150 83 7 4 chr15 36145894 36146200 -65234321 - AluY SINE Alu 0 308 2 646 282 100 3 chr15 36146294 36146623 -65233898 - L1ME3A LINE L1 -231 5947 5571 406 294 176 8 chr15 36147136 36147391 -65233130 + L1ME LINE L1 5522 5819 -302 2342 33 40 30 chr15 36147398 36147698 -65232823 + AluY SINE Alu 1 303 -8 2258 76 20 20 chr15 36147702 36148003 -65232518 + AluSg SINE Alu 1 301 -9 1154 214 20 33 chr15 36148118 36148330 -65232191 + MLT1A1 LTR MaLR 1 209 -156 2398 116 19 8 chr15 36148330 36148701 -65231820 + THE1C LTR MaLR 1 375 0 1154 214 20 33 chr15 36148701 36148791 -65231730 + MLT1A1 LTR MaLR 209 299 -66 420 309 45 20 chr15 36148821 36149026 -65231495 - L1ME LINE L1 -404 5717 5511 305 284 126 32 chr15 36149123 36149313 -65231208 + L2 LINE L2 2989 3196 -117 2192 113 17 0 chr15 36149350 36149651 -65230870 + AluSg SINE Alu 1 306 -4 355 200 163 0 chr15 36149763 36149843 -65230678 + L2 LINE L2 3190 3282 -31 1746 136 68 10 chr15 36149988 36150282 -65230239 + AluJb SINE Alu 1 311 -1 392 262 98 8 chr15 36150284 36150406 -65230115 + L1ME4a LINE L1 5769 5901 -220 1365 169 51 0 chr15 36151127 36151381 -65229140 + AluJo SINE Alu 37 303 -9 1298 109 5 0 chr15 36151490 36151676 -65228845 + AluSg/x SINE Alu 118 305 0 1443 154 30 0 chr15 36151676 36151909 -65228612 - L1PB4 LINE L1 -12 6144 5905 243 97 0 0 chr15 36151914 36151945 -65228576 - U6 snRNA snRNA -5 102 72 2015 119 18 181 chr15 36151945 36151983 -65228538 - MSTB LTR MaLR 0 426 383 1658 133 53 14 chr15 36151983 36152268 -65228253 + AluJo SINE Alu 1 296 -16 2015 119 18 181 chr15 36152268 36152681 -65227840 - MSTB LTR MaLR -43 383 62 2123 107 7 3 chr15 36152681 36152981 -65227540 - AluSx SINE Alu -11 301 1 2015 119 18 181 chr15 36152981 36153030 -65227491 - MSTB LTR MaLR -364 62 7 641 75 0 0 chr15 36153031 36153111 -65227410 + AluY SINE Alu 2 81 -229 297 0 0 0 chr15 36153222 36153255 -65227266 + (A)n Simple_repeat Simple_repeat 1 33 0 3072 122 103 60 chr15 36153422 36154021 -65226500 - MER51A LTR ERV1 -9 625 1 2041 112 3 10 chr15 36154116 36154419 -65226102 - AluSx SINE Alu -11 301 1 1893 67 3 131 chr15 36154555 36154869 -65225652 + LTR12 LTR ERV1 1 274 -440 318 291 10 0 chr15 36154881 36154984 -65225537 + LTR30 LTR ERV1 540 643 -79 615 97 86 0 chr15 36154985 36155078 -65225443 + LTR12 LTR ERV1 481 581 -133 228 67 0 0 chr15 36155149 36155179 -65225342 + (CA)n Simple_repeat Simple_repeat 2 31 0 755 152 120 73 chr15 36155265 36155383 -65225138 + MER3 DNA MER1_type 10 121 -88 2195 97 3 0 chr15 36155383 36155691 -65224830 - AluSg1 SINE Alu 0 309 1 1906 142 0 3 chr15 36155693 36155996 -65224525 - AluSx SINE Alu -10 302 1 1683 142 0 0 chr15 36156000 36156254 -65224267 - AluSx SINE Alu -19 293 40 755 152 120 73 chr15 36156254 36156318 -65224203 + MER3 DNA MER1_type 123 209 0 412 292 53 18 chr15 36156666 36156779 -65223742 + L2 LINE L2 3152 3268 -4 2175 81 14 10 chr15 36156973 36157268 -65223253 + AluSx SINE Alu 1 296 -16 218 293 122 0 chr15 36157536 36157618 -65222903 + L2 LINE L2 3156 3247 -25 2021 114 0 3 chr15 36157921 36158218 -65222303 + AluSx SINE Alu 1 296 -16 2418 77 0 0 chr15 36158218 36158528 -65221993 + AluY SINE Alu 1 310 -1 1341 174 39 63 chr15 36158546 36158797 -65221724 + L1M3 LINE L1 3978 4221 -1925 188 35 35 0 chr15 36158797 36158826 -65221695 + (TA)n Simple_repeat Simple_repeat 1 30 0 1341 174 39 63 chr15 36158826 36158907 -65221614 + L1M3 LINE L1 4221 4302 -1844 1848 113 0 0 chr15 36159007 36159332 -65221189 + AluSx SINE Alu 30 354 0 1989 172 24 16 chr15 36159332 36159514 -65221007 + L1M3 LINE L1 5130 5309 -862 1708 155 57 39 chr15 36159514 36159850 -65220671 - MER2 DNA MER2_type -2 342 1 1989 172 24 16 chr15 36159850 36160174 -65220347 + L1M3 LINE L1 5309 5641 -530 783 228 5 0 chr15 36160175 36160368 -65220153 - L1M4 LINE L1 -921 5225 5032 1121 209 0 0 chr15 36160368 36160579 -65219942 - AluJo SINE Alu -101 211 1 952 177 44 81 chr15 36160580 36160828 -65219693 - L1M4 LINE L1 -1150 4996 4758 710 142 7 35 chr15 36160819 36160960 -65219561 - L1M4 LINE L1 -746 5432 5296 * 3740 132 65 12 chr15 36160974 36161695 -65218826 + L1MB5 LINE L1 5259 6138 -36 782 219 6 30 chr15 36161695 36161864 -65218657 - FRAM SINE Alu -16 160 1 227 149 0 0 chr15 36161864 36161911 -65218610 + L1MB5 LINE L1 6128 6174 0 552 263 31 94 chr15 36162968 36163077 -65217444 + MIR SINE MIR 53 142 -120 2277 90 3 3 chr15 36163077 36163389 -65217132 + AluSp SINE Alu 1 312 -1 552 263 31 94 chr15 36163389 36163503 -65217018 + MIR SINE MIR 142 262 0 486 68 55 14 chr15 36163815 36163888 -65216633 - U6 snRNA snRNA -31 76 1 461 196 116 14 chr15 36163892 36164030 -65216491 - L1MC4 LINE L1 0 8042 7891 215 59 0 29 chr15 36164628 36164662 -65215859 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 376 226 94 0 chr15 36165116 36165222 -65215299 + MIR SINE MIR 67 182 -80 2747 133 19 23 chr15 36165531 36165961 -65214560 - MSTC LTR MaLR 0 428 1 2010 125 0 0 chr15 36165991 36166280 -65214241 + AluSx SINE Alu 5 293 -19 1164 185 0 34 chr15 36166282 36166520 -65214001 + AluSg/x SINE Alu 76 305 -7 1913 133 31 0 chr15 36166534 36166827 -65213694 - AluSx SINE Alu -10 302 1 663 272 78 19 chr15 36166846 36167103 -65213418 + L1MC4a LINE L1 5622 5893 -1915 250 271 0 29 chr15 36167106 36167176 -65213345 + L2 LINE L2 3244 3311 -2 1025 72 0 0 chr15 36168005 36168130 -65212391 + AluSq/x SINE Alu 11 135 -177 1940 119 7 7 chr15 36168130 36168424 -65212097 + AluSg1 SINE Alu 1 294 -15 1271 171 67 20 chr15 36168430 36168728 -65211793 + AluJo SINE Alu 1 312 0 3354 186 39 35 chr15 36168730 36169001 -65211520 - L1ME2 LINE L1 -55 6109 5841 2360 42 7 13 chr15 36169001 36169310 -65211211 + AluY SINE Alu 1 307 -4 3354 186 39 35 chr15 36169310 36169807 -65210714 - L1ME2 LINE L1 -323 5841 5338 1871 74 0 0 chr15 36169921 36170152 -65210369 - AluSc SINE Alu -76 233 3 587 80 45 0 chr15 36170154 36170242 -65210279 + L1MA3 LINE L1 6211 6302 -3 370 225 45 0 chr15 36170259 36170348 -65210173 + MIR SINE MIR 141 233 -29 616 257 61 0 chr15 36170858 36171006 -65209515 + MIR SINE MIR 36 192 -70 1934 130 7 16 chr15 36173361 36173703 -65206818 - AluSx SINE Alu 0 312 1 2144 108 0 13 chr15 36174545 36174861 -65205660 + AluSx SINE Alu 1 312 0 484 212 36 123 chr15 36174936 36175095 -65205426 - L1MC5 LINE L1 0 8042 7871 1856 150 3 0 chr15 36175095 36175381 -65205140 - AluSx SINE Alu -25 287 1 484 212 36 123 chr15 36175381 36175627 -65204894 - L1MC5 LINE L1 -171 7871 7697 248 250 10 0 chr15 36175627 36175723 -65204798 + CT-rich Low_complexity Low_complexity 2 98 0 2023 172 13 25 chr15 36175760 36176155 -65204366 - L1MC4 LINE L1 -364 7678 7289 2028 129 0 3 chr15 36176219 36176522 -65203999 - AluSg SINE Alu -8 302 1 197 271 85 0 chr15 36176624 36176683 -65203838 - L2 LINE L2 0 3313 3250 965 312 28 19 chr15 36176933 36177296 -65203225 - MLT1I LTR MaLR -18 391 57 2197 87 13 3 chr15 36177369 36177668 -65202853 - AluSq SINE Alu -11 302 1 642 252 115 53 chr15 36177691 36178125 -65202396 + L1MC5 LINE L1 7330 7809 -152 2164 91 3 0 chr15 36178125 36178411 -65202110 + AluSp SINE Alu 1 287 -26 642 252 115 53 chr15 36178411 36178543 -65201978 + L1MC5 LINE L1 7809 7931 -30 1826 123 3 7 chr15 36178589 36178896 -65201625 + AluSg SINE Alu 1 306 0 602 135 0 19 chr15 36179066 36179170 -65201351 - AluJo/FRAM SINE Alu -2 310 209 * 707 111 127 24 chr15 36179167 36179293 -65201228 + AluJo/FRAM SINE Alu 164 302 -10 746 234 98 96 chr15 36179316 36179584 -65200937 + L1ME4a LINE L1 5558 5824 -297 1802 164 3 3 chr15 36179584 36179888 -65200633 + AluJb SINE Alu 1 304 -8 746 234 98 96 chr15 36179888 36180182 -65200339 + L1ME4a LINE L1 5824 6121 0 474 18 0 0 chr15 36180586 36180641 -65199880 + (TG)n Simple_repeat Simple_repeat 2 56 0 3663 185 103 34 chr15 36181061 36181156 -65199365 - L1MB7 LINE L1 -31 6153 6066 2673 144 21 16 chr15 36181156 36181587 -65198934 - Tigger2a DNA MER2_type -1 433 1 3663 185 103 34 chr15 36181587 36183006 -65197515 - L1MB7 LINE L1 -118 6066 4493 1401 148 12 4 chr15 36183207 36183451 -65197070 - AluSq SINE Alu -2 311 66 471 102 0 0 chr15 36183451 36183510 -65197011 + AluSq/x SINE Alu 64 122 -190 453 138 0 0 chr15 36183508 36183573 -65196948 - AluJ/FLAM SINE Alu -246 66 2 * 1392 124 14 0 chr15 36183615 36183832 -65196689 + AluSp SINE Alu 6 225 -88 2168 63 7 14 chr15 36183946 36184231 -65196290 - AluY SINE Alu -28 283 1 859 98 0 0 chr15 36184231 36184353 -65196168 - FLAM_C SINE Alu -8 135 14 472 272 102 5 chr15 36184993 36185199 -65195322 + L1ME4a LINE L1 5843 6068 -53 2141 83 31 0 chr15 36185230 36185519 -65195002 + AluSg SINE Alu 1 298 -12 478 319 43 0 chr15 36185583 36185724 -65194797 + MIR3 SINE MIR 14 160 -48 349 285 99 40 chr15 36186070 36186221 -65194300 + MIR SINE MIR 103 262 0 225 0 0 0 chr15 36186494 36186519 -65194002 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 515 182 0 0 chr15 36187548 36187647 -65192874 + L1MB7 LINE L1 6078 6176 -8 400 228 61 9 chr15 36187802 36187916 -65192605 - LTR67 LTR ERVL -10 547 428 1404 86 0 0 chr15 36188199 36188386 -65192135 - AluSg/x SINE Alu -2 310 124 320 26 0 0 chr15 36188389 36188427 -65192094 - AluY SINE Alu -270 38 1 180 0 0 0 chr15 36188499 36188519 -65192002 + (A)n Simple_repeat Simple_repeat 1 20 0 317 225 0 28 chr15 36188856 36188927 -65191594 + MIR SINE MIR 160 228 -34 293 274 0 0 chr15 36188992 36189054 -65191467 + MER5A DNA MER1_type 128 189 0 1070 292 90 24 chr15 36189070 36189525 -65190996 + LTR67 LTR ERVL 2 486 -71 300 47 0 0 chr15 36189566 36189609 -65190912 - MER3 DNA MER1_type -22 187 145 1456 185 11 8 chr15 36189617 36189882 -65190639 - AluJb SINE Alu -26 286 21 1616 103 0 5 chr15 36189894 36190118 -65190403 - AluSx SINE Alu -89 223 1 251 200 0 0 chr15 36190145 36190185 -65190336 + Alu SINE Alu 2 41 -261 431 91 0 0 chr15 36190203 36190269 -65190252 - Alu SINE Alu 0 310 245 2069 105 7 7 chr15 36190557 36190851 -65189670 - AluSx SINE Alu -18 294 1 290 283 0 0 chr15 36190971 36191031 -65189490 + L2 LINE L2 3212 3271 -1 401 247 111 37 chr15 36192063 36192225 -65188296 + MIR SINE MIR 2 175 -87 2422 58 3 3 chr15 36192392 36192703 -65187818 + AluY SINE Alu 1 311 0 279 0 0 0 chr15 36192803 36192834 -65187687 + (TG)n Simple_repeat Simple_repeat 2 32 0 1650 134 47 0 chr15 36192834 36193109 -65187412 - L1MB3 LINE L1 -15 6168 5881 1887 157 0 0 chr15 36193119 36193431 -65187090 - AluJb SINE Alu 0 312 1 2087 88 13 20 chr15 36193908 36194213 -65186308 - AluSq SINE Alu -3 310 8 374 166 0 6 chr15 36194741 36194813 -65185708 - AluS SINE Alu -245 57 1 6138 115 26 35 chr15 36194813 36195004 -65185517 - L1PB3 LINE L1 -11 6143 5952 2198 98 0 16 chr15 36195004 36195319 -65185202 - AluSg SINE Alu 0 310 1 6138 115 26 35 chr15 36195319 36196204 -65184317 - L1PB3 LINE L1 -202 5952 5072 2260 76 0 3 chr15 36196204 36196494 -65184027 + AluSc SINE Alu 1 289 -20 6138 115 26 35 chr15 36196494 36196716 -65183805 - L1PB3 LINE L1 -1082 5072 4850 1419 157 32 36 chr15 36197124 36197404 -65183117 + AluJo SINE Alu 1 279 -33 189 171 0 0 chr15 36197405 36197440 -65183081 + GA-rich Low_complexity Low_complexity 1 35 0 1980 100 0 14 chr15 36197440 36197719 -65182802 + AluSx SINE Alu 33 307 -5 2266 100 0 0 chr15 36199656 36199956 -65180565 - AluSx SINE Alu -12 300 1 198 356 53 61 chr15 36200019 36200151 -65180370 - L2 LINE L2 -19 3253 3123 1011 211 81 0 chr15 36200344 36200567 -65179954 + MIR SINE MIR 22 262 0 558 0 0 0 chr15 36202541 36202603 -65177918 + (CA)n Simple_repeat Simple_repeat 2 63 0 1014 162 28 11 chr15 36203709 36203888 -65176633 - FRAM SINE Alu -3 173 1 2218 81 13 10 chr15 36203998 36204308 -65176213 - AluSp SINE Alu -2 311 1 1713 169 6 28 chr15 36204318 36204637 -65175884 - AluJb SINE Alu 0 312 1 1311 141 13 18 chr15 36204670 36204897 -65175624 - AluJb SINE Alu -2 310 85 2357 55 0 0 chr15 36205114 36205407 -65175114 - AluY SINE Alu -18 293 1 470 332 77 38 chr15 36206814 36207389 -65173132 - L2 LINE L2 0 3272 2678 206 174 0 22 chr15 36207465 36207511 -65173010 + T-rich Low_complexity Low_complexity 2 46 0 1056 191 97 29 chr15 36207539 36208054 -65172467 + MLT1G1 LTR MaLR 1 624 0 277 273 26 0 chr15 36208164 36208241 -65172280 - L2 LINE L2 -650 2664 2586 3838 227 96 74 chr15 36208249 36209505 -65171016 + L1MCc LINE L1 25 1251 -5468 2001 119 7 3 chr15 36209505 36209799 -65170722 + AluSx SINE Alu 1 295 -17 3838 227 96 74 chr15 36209799 36210019 -65170502 + L1MCc LINE L1 1251 1465 -5254 1912 149 10 0 chr15 36210019 36210328 -65170193 + AluJb SINE Alu 1 312 0 3838 227 96 74 chr15 36210328 36210612 -65169909 + L1MCc LINE L1 1465 1831 -4888 213 39 0 0 chr15 36211151 36211177 -65169344 + (TG)n Simple_repeat Simple_repeat 1 26 0 757 338 186 2 chr15 36211255 36211690 -65168831 + L3 LINE CR1 362 876 -701 1770 138 3 17 chr15 36211996 36212287 -65168234 + AluJo SINE Alu 7 293 -19 258 202 44 0 chr15 36212296 36212364 -65168157 - MLT1K LTR MaLR -339 249 137 373 236 121 55 chr15 36212510 36212675 -65167846 + L3 LINE CR1 931 1106 -471 751 168 74 124 chr15 36212676 36212757 -65167764 - LTR47A LTR ERVL 0 452 369 2101 113 0 0 chr15 36212757 36213066 -65167455 + AluSg SINE Alu 3 311 0 751 168 74 124 chr15 36213066 36213185 -65167336 - LTR47A LTR ERVL -83 369 261 1450 171 57 13 chr15 36213333 36213632 -65166889 - AluJb SINE Alu 0 312 1 2083 64 67 3 chr15 36213639 36213921 -65166600 - AluY SINE Alu -11 300 1 1227 271 118 9 chr15 36214039 36214464 -65166057 + L3 LINE CR1 1102 1572 -5 399 248 195 65 chr15 36214719 36214882 -65165639 - LTR16C LTR ERVL -29 462 322 2142 86 24 0 chr15 36214882 36215174 -65165347 + AluSx SINE Alu 1 299 -13 399 248 195 65 chr15 36215174 36215333 -65165188 - LTR16C LTR ERVL -169 322 98 2163 109 0 3 chr15 36215839 36216152 -65164369 + AluSx SINE Alu 1 312 0 369 0 0 0 chr15 36216626 36216667 -65163854 + (TG)n Simple_repeat Simple_repeat 1 41 0 2157 106 0 0 chr15 36218548 36218840 -65161681 - AluSx SINE Alu -20 292 1 194 287 104 61 chr15 36220521 36220636 -65159885 + L2 LINE L2 2728 2847 -467 347 182 13 0 chr15 36220878 36220955 -65159566 + (TA)n Simple_repeat Simple_repeat 1 78 0 315 250 86 66 chr15 36221002 36221154 -65159367 + L1 LINE L1 5089 5243 -903 2067 104 21 0 chr15 36221172 36221461 -65159060 + AluSg SINE Alu 1 295 -15 1930 226 82 41 chr15 36221482 36222029 -65158492 + L1MC4a LINE L1 5275 5853 -1955 1670 166 10 13 chr15 36222029 36222337 -65158184 + AluJo SINE Alu 1 307 -5 1930 226 82 41 chr15 36222337 36222426 -65158095 + L1MC4a LINE L1 5853 5937 -1871 2135 98 0 3 chr15 36222636 36222923 -65157598 - AluSc SINE Alu -23 286 1 267 169 20 0 chr15 36224210 36224265 -65156256 + L1ME2 LINE L1 5543 5601 -563 719 58 0 0 chr15 36224266 36224353 -65156168 + AluJ/FLAM SINE Alu 2 88 -224 1231 187 180 76 chr15 36224373 36224696 -65155825 + L1ME2 LINE L1 5653 6069 -95 249 88 0 0 chr15 36224696 36224730 -65155791 + MER3 DNA MER1_type 16 49 -160 1231 187 180 76 chr15 36224730 36224834 -65155687 + L1ME2 LINE L1 6069 6161 -3 243 88 0 0 chr15 36224839 36224873 -65155648 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 950 155 42 18 chr15 36224874 36225042 -65155479 - AluJb SINE Alu -34 278 107 1535 110 51 12 chr15 36225060 36225314 -65155207 + L1MA3 LINE L1 5881 6144 -161 2101 101 3 17 chr15 36225314 36225450 -65155071 + AluSx SINE Alu 1 137 -175 2214 90 3 13 chr15 36225450 36225762 -65154759 + AluSc SINE Alu 1 309 0 2101 101 3 17 chr15 36225762 36225922 -65154599 + AluSx SINE Alu 137 293 -19 2034 86 7 33 chr15 36226056 36226357 -65154164 - AluSg SINE Alu -17 293 1 33 25 0 0 chr15 36226453 36226493 -65154028 + AT_rich Low_complexity Low_complexity 1 40 0 1599 207 0 6 chr15 36226559 36226873 -65153648 - AluJb SINE Alu 0 312 1 835 132 7 15 chr15 36226873 36227009 -65153512 - AluJo SINE Alu -177 135 1 2117 72 3 21 chr15 36227346 36227637 -65152884 + AluY SINE Alu 1 286 -25 1112 143 12 0 chr15 36228031 36228199 -65152322 + MLT1C LTR MaLR 250 419 -48 1384 163 26 83 chr15 36228203 36228360 -65152161 - AluJo SINE Alu -17 295 163 2131 118 0 7 chr15 36228360 36228664 -65151857 - AluSx SINE Alu -10 302 1 1384 163 26 83 chr15 36228664 36228819 -65151702 - AluJo SINE Alu -149 163 1 2176 122 0 6 chr15 36229077 36229389 -65151132 + AluSx SINE Alu 1 310 -2 972 114 51 0 chr15 36230510 36230668 -65149853 - AluJ SINE Alu -6 306 141 786 213 0 0 chr15 36230672 36230895 -65149626 - FLAM_C SINE Alu 0 224 2 488 206 90 86 chr15 36231060 36231452 -65149069 - LTR4 LTR ERV1 0 596 112 1418 106 0 0 chr15 36231608 36231807 -65148714 + AluSg/x SINE Alu 100 298 -12 225 317 0 24 chr15 36232087 36232169 -65148352 - L2 LINE L2 -225 3047 2968 488 148 23 23 chr15 36232305 36232393 -65148128 - Charlie4a DNA MER1_type 0 508 421 510 174 183 17 chr15 36232401 36232516 -65148005 - AluJ SINE Alu -177 135 2 1250 201 99 57 chr15 36232516 36232639 -65147882 - Charlie4a DNA MER1_type -1522 439 323 2115 114 0 3 chr15 36232639 36232938 -65147583 - AluSx SINE Alu -14 298 1 1250 201 99 57 chr15 36232938 36233217 -65147304 - Charlie4a DNA MER1_type -1638 323 20 455 269 189 19 chr15 36233588 36233800 -65146721 + MIR SINE MIR 1 248 -14 755 0 0 0 chr15 36234287 36234369 -65146152 - tRNA-Ser-AGC tRNA tRNA -3 82 1 826 211 100 0 chr15 36236101 36236291 -65144230 + MER3 DNA MER1_type 1 209 0 539 203 14 43 chr15 36236379 36236517 -65144004 - MER58C DNA MER1_type -22 193 60 637 115 97 73 chr15 36236562 36236727 -65143794 - MER119 DNA MER1_type -36 547 379 808 143 0 0 chr15 36236729 36236862 -65143659 - AluSg/x SINE Alu -2 308 176 444 259 15 7 chr15 36236895 36237112 -65143409 - FLAM_C SINE Alu 0 224 7 599 192 0 0 chr15 36237670 36237790 -65142731 + AluSp/q SINE Alu 185 304 -9 550 284 8 0 chr15 36237880 36238007 -65142514 - MER119 DNA MER1_type -448 135 8 1785 131 0 73 chr15 36238015 36238343 -65142178 - AluSx SINE Alu -8 304 1 710 183 7 0 chr15 36238660 36238797 -65141724 + AluSg SINE Alu 3 140 -170 387 321 15 30 chr15 36238834 36238968 -65141553 + G-rich Low_complexity Low_complexity 6 137 0 323 270 7 33 chr15 36238981 36239133 -65141388 + G-rich Low_complexity Low_complexity 1 148 0 195 42 0 0 chr15 36239366 36239390 -65141131 + (A)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr15 36239390 36239410 -65141111 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1746 153 3 0 chr15 36239449 36239743 -65140778 - AluJb SINE Alu -17 295 1 400 231 10 0 chr15 36239750 36239854 -65140667 - L1M4 LINE L1 -2228 3918 3814 1102 128 0 0 chr15 36239854 36240018 -65140503 - FAM SINE Alu -4 45 1 353 260 10 0 chr15 36240038 36240134 -65140387 - L1M4 LINE L1 -2318 3828 3732 2022 124 7 0 chr15 36240136 36240435 -65140086 - AluSq SINE Alu -12 301 1 248 222 46 65 chr15 36240571 36240679 -65139842 + AluJb SINE Alu 121 226 -76 1804 154 42 27 chr15 36241191 36241522 -65138999 + MER1B DNA MER1_type 1 336 -1 2003 45 48 31 chr15 36241712 36242003 -65138518 + AluY SINE Alu 1 296 -15 1962 54 88 44 chr15 36242020 36242179 -65138342 - AluY SINE Alu -4 307 156 1981 67 11 25 chr15 36242179 36242462 -65138059 - AluY SINE Alu -1 310 32 1962 54 88 44 chr15 36242462 36242596 -65137925 - AluY SINE Alu -155 156 1 2274 89 7 0 chr15 36242641 36242945 -65137576 - AluSp SINE Alu -7 306 1 2194 47 11 11 chr15 36243250 36243529 -65136992 - L1PA6 LINE L1 -2 6152 5874 21 0 0 0 chr15 36243652 36243673 -65136848 + AT_rich Low_complexity Low_complexity 1 21 0 2707 165 2 11 chr15 36243693 36244148 -65136373 - MER66B LTR ERV1 -35 451 1 329 0 24 0 chr15 36244164 36244205 -65136316 + (CAT)n Simple_repeat Simple_repeat 2 43 0 663 225 0 0 chr15 36244429 36244558 -65135963 - FLAM_A SINE Alu -4 129 1 655 319 46 25 chr15 36244558 36244836 -65135685 + MER102a DNA MER1_type 44 330 0 1651 147 18 7 chr15 36245508 36245793 -65134728 - AluSx SINE Alu -24 288 1 428 326 102 58 chr15 36245793 36246226 -65134295 - MLT1K LTR MaLR -46 542 91 1432 201 10 29 chr15 36246635 36246807 -65133714 - AluJo SINE Alu -5 307 142 1722 162 10 3 chr15 36246807 36247103 -65133418 - AluJb SINE Alu -14 298 1 1432 201 10 29 chr15 36247103 36247243 -65133278 - AluJo SINE Alu -170 142 1 535 178 30 0 chr15 36247255 36247356 -65133165 - U13 snRNA snRNA 0 104 1 3114 115 17 11 chr15 36247736 36248206 -65132315 + L1MB3 LINE L1 5383 5855 -328 1453 121 163 15 chr15 36248235 36248499 -65132022 + AluSg1 SINE Alu 1 303 -6 2127 100 3 10 chr15 36248506 36248805 -65131716 + AluSp SINE Alu 3 299 -14 260 230 139 0 chr15 36249083 36249168 -65131353 + L1 LINE L1 4030 4126 -2020 1781 157 0 23 chr15 36249169 36249474 -65131047 + AluJo SINE Alu 1 298 -14 354 250 110 44 chr15 36249655 36249791 -65130730 + L2 LINE L2 3169 3313 0 207 0 0 0 chr15 36249888 36249911 -65130610 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 862 156 95 22 chr15 36249924 36250103 -65130418 + AluJb SINE Alu 112 303 -9 1649 167 28 11 chr15 36250459 36250746 -65129775 + AluJo SINE Alu 1 292 -20 1917 125 7 4 chr15 36250958 36251238 -65129283 - AluJb SINE Alu -30 282 2 2303 101 0 13 chr15 36251290 36251598 -65128923 - AluSg SINE Alu -6 304 1 25 0 0 0 chr15 36251643 36251668 -65128853 + AT_rich Low_complexity Low_complexity 1 25 0 38 51 0 0 chr15 36251708 36251767 -65128754 + AT_rich Low_complexity Low_complexity 1 59 0 21 71 0 0 chr15 36251889 36251931 -65128590 + AT_rich Low_complexity Low_complexity 1 42 0 23 54 0 0 chr15 36251952 36251989 -65128532 + AT_rich Low_complexity Low_complexity 1 37 0 351 242 11 21 chr15 36251989 36252084 -65128437 + L1MC4a LINE L1 5348 5441 -2367 2062 97 3 24 chr15 36252089 36252227 -65128294 + AluSx SINE Alu 1 140 -184 2268 95 0 16 chr15 36252227 36252533 -65127988 + AluSc SINE Alu 1 301 -8 2062 97 3 24 chr15 36252533 36252724 -65127797 + AluSx SINE Alu 140 324 0 1268 256 11 7 chr15 36252727 36253008 -65127513 + AluSg SINE Alu 1 282 -28 269 456 0 41 chr15 36253009 36253156 -65127365 + G-rich Low_complexity Low_complexity 1 141 0 279 464 0 0 chr15 36253200 36253310 -65127211 + G-rich Low_complexity Low_complexity 1 110 0 830 235 0 17 chr15 36253466 36253700 -65126821 - AluSc SINE Alu -73 236 7 858 281 81 27 chr15 36253760 36254170 -65126351 + L1MC4a LINE L1 5536 5912 -252 23 0 0 0 chr15 36254420 36254443 -65126078 + AT_rich Low_complexity Low_complexity 1 23 0 1164 146 0 0 chr15 36254493 36254658 -65125863 - AluSp SINE Alu -15 298 134 305 24 24 0 chr15 36254658 36254700 -65125821 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 2101 80 0 24 chr15 36254700 36254987 -65125534 - AluY SINE Alu -30 281 2 2250 75 14 10 chr15 36254998 36255290 -65125231 - AluSq SINE Alu -20 293 1 209 358 180 33 chr15 36255320 36255348 -65125173 + L2 LINE L2 2329 2352 -962 2280 109 0 10 chr15 36255348 36255652 -65124869 - AluSq SINE Alu -12 301 1 209 358 180 33 chr15 36255652 36256078 -65124443 + L2 LINE L2 2352 2850 -464 1555 158 39 11 chr15 36256180 36256465 -65124056 - AluSx SINE Alu -9 293 1 267 234 188 0 chr15 36257145 36257209 -65123312 - MER5C DNA MER1_type -248 76 1 342 179 0 0 chr15 36257373 36257429 -65123092 - MER66B LTR ERV1 -136 350 295 321 26 0 0 chr15 36257607 36257645 -65122876 + (A)n Simple_repeat Simple_repeat 1 38 0 180 0 0 0 chr15 36258151 36258171 -65122350 + (TAA)n Simple_repeat Simple_repeat 2 21 0 896 106 25 38 chr15 36258292 36258452 -65122069 + L1MA4 LINE L1 6143 6300 0 187 158 0 53 chr15 36258900 36258938 -65121583 - MER5C DNA MER1_type -285 39 4 198 0 0 0 chr15 36258988 36259010 -65121511 + (TA)n Simple_repeat Simple_repeat 2 23 0 1844 166 0 7 chr15 36259035 36259336 -65121185 - AluJo SINE Alu -13 299 1 294 109 0 55 chr15 36259446 36259501 -65121020 - L1ME LINE L1 -664 5498 5447 1956 116 0 64 chr15 36262882 36263225 -65117296 - AluSx SINE Alu 0 312 1 310 242 198 0 chr15 36263236 36263327 -65117194 - L2 LINE L2 -9 3304 3196 2091 127 0 0 chr15 36263339 36263630 -65116891 - AluSx SINE Alu -17 295 5 2166 136 0 0 chr15 36263640 36263949 -65116572 - AluSx SINE Alu -3 309 1 2407 87 0 0 chr15 36263987 36264285 -65116236 + AluY SINE Alu 1 298 -13 22 0 0 0 chr15 36265253 36265275 -65115246 + AT_rich Low_complexity Low_complexity 1 22 0 900 200 6 0 chr15 36265375 36265540 -65114981 + FRAM SINE Alu 1 163 -13 842 177 26 31 chr15 36266117 36266309 -65114212 - AluSg SINE Alu -118 192 2 1311 210 4 7 chr15 36266528 36266809 -65113712 - AluSg SINE Alu -30 280 1 693 233 0 0 chr15 36267054 36267174 -65113347 + FLAM_A SINE Alu 2 121 -12 3127 135 8 38 chr15 36267481 36267846 -65112675 + MER1A DNA MER1_type 49 397 -2305 1908 153 13 7 chr15 36267846 36268154 -65112367 + AluSx SINE Alu 1 310 -2 3127 135 8 38 chr15 36268154 36268284 -65112237 + MER1A DNA MER1_type 397 529 0 475 311 129 14 chr15 36268321 36268490 -65112031 + L1M4 LINE L1 2872 3020 -3126 983 143 0 0 chr15 36268490 36268623 -65111898 - FLAM_C SINE Alu 0 133 1 475 311 129 14 chr15 36268623 36268735 -65111786 + L1M4 LINE L1 3020 3118 -3028 1827 177 3 3 chr15 36268735 36269040 -65111481 + AluJo SINE Alu 1 305 -7 475 311 129 14 chr15 36269040 36269107 -65111414 + L1M4 LINE L1 3118 3261 -2885 703 191 0 0 chr15 36269113 36269223 -65111298 + FLAM_A SINE Alu 1 110 -32 1459 204 21 0 chr15 36269339 36269628 -65110893 + AluJb SINE Alu 5 299 -13 602 138 52 0 chr15 36269629 36269745 -65110776 + L1M4 LINE L1 5195 5316 -830 845 153 0 22 chr15 36269747 36269884 -65110637 + FLAM_C SINE Alu 1 134 -9 289 159 0 43 chr15 36269909 36269978 -65110543 + L1M LINE L1 5293 5358 -826 3385 123 34 24 chr15 36269978 36270056 -65110465 + Tigger3b DNA MER2_type 1 77 -2951 1946 127 63 0 chr15 36270056 36270340 -65110181 + AluSx SINE Alu 1 302 -10 3385 123 34 24 chr15 36270340 36270551 -65109970 + Tigger3b DNA MER2_type 77 285 -2743 1572 193 30 3 chr15 36270551 36270847 -65109674 - AluJo SINE Alu -8 304 1 3385 123 34 24 chr15 36270847 36271091 -65109430 + Tigger3b DNA MER2_type 285 540 -691 2104 117 7 7 chr15 36271092 36271412 -65109109 - AluSq SINE Alu 0 313 3 425 167 11 22 chr15 36271415 36271505 -65109016 + L1MB8 LINE L1 6090 6178 0 1066 141 32 27 chr15 36272069 36272289 -65108232 - AluY SINE Alu -22 289 69 560 130 22 11 chr15 36272398 36272490 -65108031 - AluS SINE Alu -220 93 1 926 201 136 125 chr15 36272799 36272904 -65107617 - L1MC5 LINE L1 -37 7924 7822 1796 145 3 11 chr15 36272904 36273187 -65107334 + AluJb SINE Alu 6 286 -26 926 201 136 125 chr15 36273187 36273831 -65106690 - L1MC5 LINE L1 -139 7822 7167 830 170 7 7 chr15 36273838 36273973 -65106548 + Tigger4(Zombi) DNA MER2_type 1 135 -2596 1749 125 29 4 chr15 36273977 36274249 -65106272 + Tigger4(Zombi) DNA MER2_type 2415 2693 -38 898 161 47 5 chr15 36274249 36274441 -65106080 + AluSx SINE Alu 1 200 -112 516 192 192 16 chr15 36274641 36274766 -65105755 - AluJo SINE Alu -163 149 3 2174 108 3 3 chr15 36274774 36275079 -65105442 - AluSx SINE Alu -1 311 7 2002 102 65 0 chr15 36275092 36275385 -65105136 - AluSp SINE Alu -1 312 1 1477 164 23 59 chr15 36275465 36275596 -65104925 + AluJb SINE Alu 1 135 -177 2282 104 3 0 chr15 36275596 36275903 -65104618 + AluSq SINE Alu 1 308 -5 1477 164 23 59 chr15 36275903 36276075 -65104446 + AluJb SINE Alu 135 293 -19 1285 185 9 0 chr15 36276085 36276301 -65104220 + AluJo SINE Alu 1 218 -94 696 353 12 8 chr15 36276378 36276619 -65103902 - AluSg/x SINE Alu -1 311 70 2216 99 20 0 chr15 36277322 36277614 -65102907 - AluSx SINE Alu -14 298 1 384 232 169 2 chr15 36278366 36278508 -65102013 + MIR SINE MIR 2 162 -62 1800 134 131 6 chr15 36278676 36278996 -65101525 + MER46B DNA MER2_type 1 235 -1 2065 84 0 0 chr15 36279339 36279600 -65100921 + AluY SINE Alu 1 261 -50 413 235 10 31 chr15 36279771 36279869 -65100652 + AluY SINE Alu 202 297 -14 495 206 19 9 chr15 36279916 36280023 -65100498 - L2 LINE L2 0 3313 3206 207 69 0 0 chr15 36280063 36280092 -65100429 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2167 101 0 0 chr15 36280095 36280373 -65100148 - AluSx SINE Alu -29 283 6 1827 118 80 3 chr15 36280627 36280914 -65099607 - AluY SINE Alu -2 309 1 1261 96 0 45 chr15 36280937 36281114 -65099407 + AluSc SINE Alu 123 291 -18 3264 203 28 76 chr15 36281402 36282420 -65098101 - LTR5 LTR ERVK 0 969 1 47 44 0 0 chr15 36283856 36283924 -65096597 + AT_rich Low_complexity Low_complexity 1 68 0 25 31 0 0 chr15 36283946 36283978 -65096543 + AT_rich Low_complexity Low_complexity 1 32 0 2530 66 0 0 chr15 36284026 36284329 -65096192 + AluY SINE Alu 1 303 -8 2208 79 4 0 chr15 36284655 36284932 -65095589 + AluSx SINE Alu 13 290 -22 180 0 0 0 chr15 36284940 36284960 -65095561 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 456 320 127 14 chr15 36285126 36285473 -65095048 + L2 LINE L2 1867 2252 -1062 251 318 32 71 chr15 36285462 36285588 -65094933 - L2 LINE L2 -8 3264 3144 * 1103 178 5 0 chr15 36285686 36285871 -65094650 + AluJo SINE Alu 86 271 -41 24 0 0 0 chr15 36285873 36285897 -65094624 + AT_rich Low_complexity Low_complexity 1 24 0 184 262 57 71 chr15 36286114 36286255 -65094266 + L2 LINE L2 2622 2760 -554 583 145 0 174 chr15 36286277 36286559 -65093962 - AluSp SINE Alu -7 306 74 2305 87 3 26 chr15 36286731 36287043 -65093478 - AluSp SINE Alu -8 305 1 2102 120 3 0 chr15 36287213 36287497 -65093024 - AluSx SINE Alu -24 288 4 21 0 0 0 chr15 36287505 36287526 -65092995 + AT_rich Low_complexity Low_complexity 1 21 0 1004 140 7 0 chr15 36287528 36287671 -65092850 - FRAM SINE Alu -30 146 3 329 388 25 6 chr15 36287799 36287959 -65092562 + L2 LINE L2 3106 3268 -4 220 256 11 100 chr15 36287997 36288087 -65092434 + L2 LINE L2 1371 1452 -1862 201 74 0 0 chr15 36290408 36290435 -65090086 + (T)n Simple_repeat Simple_repeat 1 27 0 273 188 16 188 chr15 36290435 36290448 -65090073 - HAL1 LINE L1 -1677 830 816 1883 125 20 14 chr15 36290448 36290744 -65089777 + AluSx SINE Alu 6 303 -9 273 188 16 188 chr15 36290744 36290922 -65089599 - HAL1 LINE L1 -1691 816 672 320 331 184 49 chr15 36290988 36291130 -65089391 + L2 LINE L2 2372 2493 -821 1872 131 14 14 chr15 36291130 36291453 -65089068 - AluSx SINE Alu 0 312 1 320 331 184 49 chr15 36291453 36291844 -65088677 + L2 LINE L2 2493 2977 -337 219 133 0 0 chr15 36292093 36292138 -65088383 + (A)n Simple_repeat Simple_repeat 1 45 0 24 91 0 0 chr15 36292152 36292218 -65088303 + AT_rich Low_complexity Low_complexity 1 66 0 271 409 31 8 chr15 36292383 36292510 -65088011 + L2 LINE L2 3123 3252 -20 2225 100 0 0 chr15 36292955 36293244 -65087277 + AluY SINE Alu 1 289 -22 2024 143 3 0 chr15 36293383 36293676 -65086845 + AluSx SINE Alu 1 294 -18 2272 109 3 10 chr15 36293679 36293991 -65086530 + AluSg SINE Alu 1 310 0 2102 124 3 3 chr15 36294001 36294291 -65086230 + AluSg SINE Alu 2 291 -19 2011 141 0 3 chr15 36294453 36294759 -65085762 + AluSx SINE Alu 3 307 -5 213 351 104 15 chr15 36294863 36294997 -65085524 + L2 LINE L2 1317 1462 -1852 2244 157 72 2 chr15 36295326 36295727 -65084794 - MLT1C LTR MaLR 0 467 39 377 75 0 0 chr15 36295843 36295896 -65084625 + Alu SINE Alu 248 300 -1 2259 61 43 0 chr15 36296112 36296392 -65084129 - AluY SINE Alu -18 293 2 1972 117 0 18 chr15 36296656 36296937 -65083584 - AluSg SINE Alu -34 276 1 812 138 0 0 chr15 36296946 36297055 -65083466 - AluSq/x SINE Alu -202 110 2 601 206 19 0 chr15 36297178 36297285 -65083236 - AluSg/x SINE Alu -21 291 183 258 330 34 17 chr15 36297388 36297507 -65083014 + CT-rich Low_complexity Low_complexity 1 121 0 2211 71 7 14 chr15 36298047 36298342 -65082179 + AluSx SINE Alu 1 293 -19 1895 172 0 0 chr15 36298970 36299273 -65081248 + AluJb SINE Alu 1 303 -9 2433 74 7 0 chr15 36299350 36299648 -65080873 - AluY SINE Alu -10 301 2 22 35 0 0 chr15 36300050 36300079 -65080442 + AT_rich Low_complexity Low_complexity 1 29 0 339 210 12 25 chr15 36300751 36300832 -65079689 + FLAM SINE Alu 44 123 -10 1718 163 10 17 chr15 36300844 36301145 -65079376 + AluSp SINE Alu 1 299 -14 851 164 0 0 chr15 36301145 36301273 -65079248 - AluJo/FLAM SINE Alu -172 130 3 2063 134 3 3 chr15 36301320 36301625 -65078896 - AluSx SINE Alu -7 305 1 192 152 0 0 chr15 36301659 36301692 -65078829 + T-rich Low_complexity Low_complexity 2 34 0 447 169 0 0 chr15 36301693 36301758 -65078763 - AluS SINE Alu -247 66 2 246 32 0 0 chr15 36301813 36301844 -65078677 + (T)n Simple_repeat Simple_repeat 1 31 0 852 188 0 0 chr15 36301860 36301993 -65078528 - FLAM_C SINE Alu 0 133 1 1754 165 34 3 chr15 36302191 36302482 -65078039 - AluJb SINE Alu -12 300 1 237 247 65 11 chr15 36302696 36302789 -65077732 - AluJb SINE Alu -178 124 27 1799 86 0 0 chr15 36303054 36303287 -65077234 + AluSg/x SINE Alu 66 298 -14 1800 81 4 0 chr15 36303489 36303725 -65076796 + AluSg SINE Alu 1 237 -73 2090 127 93 51 chr15 36304039 36304221 -65076300 + MSTC LTR MaLR 1 174 -254 1972 136 0 3 chr15 36304221 36304516 -65076005 + AluSx SINE Alu 1 294 -18 1566 183 6 25 chr15 36304525 36304842 -65075679 + AluJb SINE Alu 1 311 -1 2090 127 93 51 chr15 36304842 36305058 -65075463 + MSTC LTR MaLR 181 426 -2 349 119 17 47 chr15 36305118 36305351 -65075170 - L1MA7 LINE L1 -149 6142 5904 2125 106 0 3 chr15 36305351 36305644 -65074877 - AluSc SINE Alu -17 292 1 349 119 17 47 chr15 36305644 36305992 -65074529 - L1MA7 LINE L1 -387 5904 5609 2217 110 0 0 chr15 36305992 36306301 -65074220 - AluSc SINE Alu 0 309 1 349 119 17 47 chr15 36306301 36306646 -65073875 - L1MA7 LINE L1 -682 5609 5255 1521 175 14 11 chr15 36306655 36306935 -65073586 - AluY SINE Alu -18 283 3 403 351 111 51 chr15 36306936 36307417 -65073104 + L1M2 LINE L1 1647 2079 -4770 1430 125 0 13 chr15 36307519 36307743 -65072778 - AluSc SINE Alu -88 221 1 5298 179 149 140 chr15 36307743 36308473 -65072048 - L1 LINE L1 -876 6689 5967 2265 84 3 3 chr15 36308473 36308772 -65071749 - AluY SINE Alu -12 299 1 5298 179 149 140 chr15 36308772 36308930 -65071591 - L1 LINE L1 -1598 5967 5812 2157 111 0 7 chr15 36308930 36309237 -65071284 + AluSg SINE Alu 1 305 -5 1108 125 0 0 chr15 36309243 36309403 -65071118 + AluSg/x SINE Alu 138 297 -13 5298 179 149 140 chr15 36309403 36309702 -65070819 - L1 LINE L1 -1757 5808 5513 332 221 0 29 chr15 36309702 36309770 -65070751 + AluS SINE Alu 1 66 -237 1269 121 0 0 chr15 36309770 36309944 -65070577 - AluSx SINE Alu -137 175 2 5298 179 149 140 chr15 36309944 36310324 -65070197 - L1 LINE L1 -2052 5513 5138 2310 89 0 6 chr15 36310324 36310637 -65069884 - AluY SINE Alu 0 311 1 5298 179 149 140 chr15 36310637 36310825 -65069696 - L1 LINE L1 -2427 5138 4953 2071 105 24 0 chr15 36310825 36311119 -65069402 - AluSx SINE Alu -9 303 3 5298 179 149 140 chr15 36311119 36312406 -65068115 - L1 LINE L1 -2612 4953 3678 2167 116 0 0 chr15 36312406 36312708 -65067813 + AluSg1 SINE Alu 1 302 -7 5298 179 149 140 chr15 36312708 36312754 -65067767 - L1 LINE L1 -3887 3678 3634 1540 154 7 4 chr15 36312754 36313026 -65067495 - AluSq SINE Alu -38 275 3 5298 179 149 140 chr15 36313026 36313096 -65067425 - L1 LINE L1 -3931 3634 3087 589 105 0 0 chr15 36313080 36313166 -65067355 - L1 LINE L1 -3783 2363 2278 * 5741 116 48 46 chr15 36313178 36314562 -65065959 - pTR5 LTR ERV1 -143 2295 743 2970 137 146 76 chr15 36314610 36314678 -65065843 - L1 LINE L1 -4463 3102 3040 2127 111 20 0 chr15 36314678 36314984 -65065537 - AluSx SINE Alu 0 312 1 2970 137 146 76 chr15 36314984 36315461 -65065060 - L1 LINE L1 -4525 3040 2598 623 414 29 83 chr15 36315461 36315773 -65064748 - AluY SINE Alu -6 295 1 2970 137 146 76 chr15 36315773 36316416 -65064105 - L1 LINE L1 -4967 2598 2001 2357 71 0 0 chr15 36316416 36316713 -65063808 - AluY SINE Alu -14 297 1 2970 137 146 76 chr15 36316713 36316729 -65063792 - L1 LINE L1 -5564 2001 1988 2118 113 3 7 chr15 36316729 36317039 -65063482 - AluSx SINE Alu -3 309 1 2970 137 146 76 chr15 36317039 36317202 -65063319 - L1 LINE L1 -5577 1988 1411 2402 177 132 12 chr15 36317186 36317695 -65062826 - L1 LINE L1 -6987 578 9 * 3892 123 38 0 chr15 36317687 36318312 -65062209 - L1M1 LINE L1 -4499 3066 2418 2236 100 3 3 chr15 36318313 36318778 -65061743 - AluSp SINE Alu 0 467 3 1815 156 10 0 chr15 36318780 36319075 -65061446 - AluSx SINE Alu -14 298 1 304 112 0 12 chr15 36319130 36319187 -65061334 + AluSp SINE Alu 120 170 -133 1765 98 17 0 chr15 36319187 36319423 -65061098 + HERVK11 LTR ERVK 6528 6767 -1186 1138 199 17 21 chr15 36319408 36319649 -65060872 + HERVK11 LTR ERVK 6957 7196 -757 * 223 272 40 24 chr15 36319759 36319884 -65060637 + G-rich Low_complexity Low_complexity 4 130 0 871 122 0 8 chr15 36320190 36320321 -65060200 - AluSq/x SINE Alu -182 130 1 12136 143 34 8 chr15 36320321 36320409 -65060112 - L1M1 LINE L1 -5133 2432 2348 9029 26 5 234 chr15 36320409 36322193 -65058328 + SVA Other Other 7 1381 -5 12136 143 34 8 chr15 36322193 36323974 -65056547 - L1M1 LINE L1 -5217 2348 514 6434 103 8 19 chr15 36324012 36324984 -65055537 - MER11C LTR ERVK -14 1057 4 7697 56 0 1 chr15 36324986 36325910 -65054611 - HERVK11 LTR ERVK 0 7953 7031 898 104 0 15 chr15 36326202 36326336 -65054185 - FLAM_C SINE Alu -5 138 7 1801 126 18 3 chr15 36326528 36326813 -65053708 - AluSx SINE Alu -23 289 1 455 212 0 10 chr15 36327364 36327463 -65053058 - AluJb SINE Alu -91 221 124 2000 109 7 14 chr15 36328344 36328637 -65051884 - AluSx SINE Alu -21 291 1 231 114 0 0 chr15 36328686 36328721 -65051800 + (T)n Simple_repeat Simple_repeat 1 35 0 730 122 9 0 chr15 36328729 36328836 -65051685 - AluSg/x SINE Alu -4 308 201 2176 101 10 0 chr15 36329206 36329513 -65051008 - AluSp SINE Alu -3 310 1 699 218 0 0 chr15 36329523 36329656 -65050865 - FLAM_C SINE Alu 0 133 1 279 286 0 0 chr15 36330790 36330853 -65049668 - MER2 DNA MER2_type 0 345 283 791 139 0 0 chr15 36330875 36330990 -65049531 - MER2 DNA MER2_type -210 135 21 2790 46 32 0 chr15 36331204 36331601 -65048920 - MER11B LTR ERVK -733 503 1 8275 57 4 1 chr15 36331601 36332595 -65047926 - HERVK11 LTR ERVK 0 7953 6957 1759 98 17 0 chr15 36332580 36332816 -65047705 - HERVK11 LTR ERVK -1186 6767 6528 * 304 112 0 12 chr15 36332816 36332873 -65047648 - AluSp SINE Alu -133 170 120 1862 166 0 0 chr15 36332928 36333236 -65047285 + AluSq SINE Alu 1 308 -5 2676 185 43 2 chr15 36333289 36333776 -65046745 + L1M1 LINE L1 14 520 -7045 1824 38 0 0 chr15 36333794 36334005 -65046516 + HERVK11 LTR ERVK 6320 6530 -1423 * 5261 48 5 2 chr15 36334001 36334640 -65045881 - HERVK11 LTR ERVK -1617 6336 5696 407 83 17 0 chr15 36334640 36334700 -65045821 - L1MA7 LINE L1 -97 6194 6134 316 215 0 15 chr15 36334989 36335054 -65045467 + L1MC4 LINE L1 6640 6703 -1339 1478 175 0 89 chr15 36335066 36335263 -65045258 - AluJo SINE Alu -11 301 143 2174 85 13 3 chr15 36335263 36335568 -65044953 + AluSc SINE Alu 1 308 -1 1478 175 0 89 chr15 36335568 36335696 -65044825 - AluJo SINE Alu -169 143 5 26 30 0 0 chr15 36335919 36335952 -65044569 + AT_rich Low_complexity Low_complexity 1 33 0 1932 98 88 0 chr15 36336075 36336360 -65044161 - AluSx SINE Alu -1 311 2 1679 149 59 43 chr15 36336764 36337086 -65043435 + MER1B DNA MER1_type 1 327 -12 224 320 93 10 chr15 36337097 36337194 -65043327 + L2 LINE L2 2580 2684 -630 710 169 25 0 chr15 36337273 36337391 -65043130 + AluJo/FLAM SINE Alu 9 129 -183 2016 96 3 7 chr15 36337394 36337717 -65042804 + AluSx SINE Alu 1 322 0 2254 75 3 0 chr15 36337811 36338104 -65042417 - AluSg1 SINE Alu -15 294 1 1739 123 3 21 chr15 36338136 36338421 -65042100 - AluJo SINE Alu -26 286 7 1804 126 18 3 chr15 36338613 36338898 -65041623 - AluSx SINE Alu -23 289 1 544 165 0 0 chr15 36339442 36339539 -65040982 - FLAM_A SINE Alu -45 97 1 2212 68 0 10 chr15 36340434 36340728 -65039793 - AluSx SINE Alu -21 291 1 192 40 0 0 chr15 36340730 36340755 -65039766 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 444 260 81 73 chr15 36340755 36340843 -65039678 - L1ME3A LINE L1 -3 6167 6081 1453 157 26 4 chr15 36340843 36341111 -65039410 + AluJb SINE Alu 1 274 -38 444 260 81 73 chr15 36341111 36341268 -65039253 - L1ME3A LINE L1 -89 6081 5920 812 208 92 48 chr15 36341272 36341625 -65038896 - L1ME3A LINE L1 -621 5543 5207 242 29 29 0 chr15 36341625 36341660 -65038861 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2151 83 3 14 chr15 36341664 36341952 -65038569 - AluSp SINE Alu -26 287 3 812 208 92 48 chr15 36341952 36342061 -65038460 - L1ME3A LINE L1 -959 5205 5060 2103 115 18 96 chr15 36342073 36342121 -65038400 - L1MA6 LINE L1 -1 6299 6249 2096 54 96 4 chr15 36342121 36342401 -65038120 - AluY SINE Alu -5 306 1 2103 115 18 96 chr15 36342401 36342734 -65037787 - L1MA6 LINE L1 -51 6249 5954 2085 109 3 0 chr15 36342734 36343036 -65037485 - AluSc SINE Alu -6 303 1 2103 115 18 96 chr15 36343036 36343089 -65037432 - L1MA6 LINE L1 -346 5954 5898 207 0 0 0 chr15 36343688 36343711 -65036810 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2187 82 4 0 chr15 36343713 36343993 -65036528 - AluSp SINE Alu -32 281 1 699 218 0 0 chr15 36344003 36344136 -65036385 - FLAM_C SINE Alu 0 133 1 279 286 0 0 chr15 36345270 36345333 -65035188 - MER2 DNA MER2_type 0 345 283 791 139 0 0 chr15 36345355 36345470 -65035051 - MER2 DNA MER2_type -210 135 21 1273 154 187 19 chr15 36345885 36346180 -65034341 - AluSx SINE Alu 0 340 1 2286 96 0 0 chr15 36346327 36346628 -65033893 - AluSc SINE Alu -4 305 5 1840 147 0 16 chr15 36347058 36347364 -65033157 - AluSx SINE Alu -7 305 5 843 153 45 80 chr15 36347367 36347543 -65032978 - FRAM SINE Alu -13 163 1 301 365 44 25 chr15 36347651 36347810 -65032711 + L2 LINE L2 3106 3267 -5 700 125 0 0 chr15 36347829 36347925 -65032596 - AluS SINE Alu -216 97 2 1809 247 78 6 chr15 36348014 36348453 -65032068 - L1M4 LINE L1 -2629 3517 3111 1413 173 6 77 chr15 36348453 36348619 -65031902 - AluJo SINE Alu -11 301 125 207 0 0 0 chr15 36348619 36348642 -65031879 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1931 92 33 0 chr15 36348642 36348914 -65031607 - AluSg SINE Alu -29 281 1 1988 125 3 0 chr15 36348914 36349209 -65031312 - AluSg SINE Alu -14 296 1 1413 173 6 77 chr15 36349209 36349221 -65031300 - AluJo SINE Alu -185 127 116 2158 114 0 0 chr15 36349221 36349518 -65031003 - AluSg SINE Alu -13 297 1 1413 173 6 77 chr15 36349518 36349660 -65030861 - AluJo SINE Alu -196 116 1 1809 247 78 6 chr15 36349660 36349844 -65030677 - L1M4 LINE L1 -3035 3111 2849 2225 63 0 7 chr15 36350147 36350456 -65030065 - AluY SINE Alu 0 307 1 1691 134 33 43 chr15 36350965 36351270 -65029251 + AluSp SINE Alu 1 302 -11 1359 171 24 44 chr15 36351547 36351845 -65028676 - AluJo SINE Alu -20 292 1 2205 116 0 0 chr15 36351854 36352155 -65028366 - AluSx SINE Alu -11 301 1 239 338 0 0 chr15 36352157 36352228 -65028293 + L1MD2 LINE L1 6201 6271 -88 1932 147 0 0 chr15 36352265 36352564 -65027957 - AluSg SINE Alu -11 299 1 1456 110 5 0 chr15 36352564 36352772 -65027749 - AluSg/x SINE Alu -8 302 93 2068 105 14 0 chr15 36352780 36353076 -65027445 - AluSx SINE Alu -12 300 1 232 36 0 0 chr15 36353121 36353149 -65027372 + (TTTG)n Simple_repeat Simple_repeat 2 92 0 1631 158 37 0 chr15 36353149 36353422 -65027099 - AluJb SINE Alu -1 310 1 248 260 0 0 chr15 36353923 36353996 -65026525 - AluJ/FRAM SINE Alu 0 302 230 1600 101 4 8 chr15 36354490 36354728 -65025793 - AluSp SINE Alu -76 237 1 576 131 0 0 chr15 36354993 36355077 -65025444 - AluJ/FLAM SINE Alu -227 85 2 406 323 139 20 chr15 36355084 36355285 -65025236 + L2 LINE L2 1007 1231 -2083 621 90 0 0 chr15 36355287 36355365 -65025156 + AluSx SINE Alu 2 79 -233 2613 48 0 0 chr15 36355366 36355676 -65024845 + AluY SINE Alu 1 310 -1 1791 100 0 0 chr15 36355692 36355933 -65024588 + AluSx SINE Alu 66 306 -4 456 326 102 31 chr15 36355947 36356365 -65024156 + L2 LINE L2 1218 1724 -1590 220 267 158 0 chr15 36356406 36356507 -65024014 - MIR SINE MIR -128 134 18 793 153 0 69 chr15 36356524 36356668 -65023853 + FLAM_C SINE Alu 7 140 -3 681 206 8 8 chr15 36356667 36356798 -65023723 + AluJb SINE Alu 118 248 -64 * 268 270 95 0 chr15 36356798 36356872 -65023649 + L2 LINE L2 3232 3312 -1 1739 157 10 13 chr15 36357200 36357499 -65023022 + AluJo SINE Alu 3 300 -12 2264 96 0 10 chr15 36358273 36358587 -65021934 - AluSx SINE Alu -1 311 1 1998 119 23 3 chr15 36358645 36358948 -65021573 - AluSx SINE Alu -3 309 1 2324 77 0 0 chr15 36359013 36359311 -65021210 - AluY SINE Alu -13 298 1 756 189 0 0 chr15 36359400 36359532 -65020989 - FLAM_A SINE Alu 0 133 2 801 153 0 23 chr15 36360298 36360429 -65020092 + FLAM_C SINE Alu 2 129 -14 2186 107 0 0 chr15 36360484 36360784 -65019737 + AluSg1 SINE Alu 4 303 -6 402 223 64 0 chr15 36361545 36361639 -65018882 - MIR SINE MIR -40 222 123 1833 110 70 0 chr15 36361780 36362053 -65018468 - AluSx SINE Alu -20 292 1 2380 75 0 7 chr15 36362060 36362367 -65018154 - AluY SINE Alu -6 305 1 2041 107 20 3 chr15 36362466 36362765 -65017756 + AluSp SINE Alu 1 304 -9 1676 161 31 0 chr15 36363355 36363641 -65016880 + AluJb SINE Alu 1 295 -17 2022 131 13 0 chr15 36363641 36363947 -65016574 + AluSx SINE Alu 1 310 -2 2172 105 0 7 chr15 36364460 36364764 -65015757 - AluSx SINE Alu -10 302 1 1182 200 89 32 chr15 36364780 36364956 -65015565 + L1MB7 LINE L1 2182 2347 -3799 2373 67 0 0 chr15 36364956 36365253 -65015268 + AluY SINE Alu 1 297 -14 1182 200 89 32 chr15 36365253 36365446 -65015075 + L1MB7 LINE L1 2347 2572 -3574 3320 206 52 67 chr15 36365501 36365548 -65014973 + L1MB7 LINE L1 3998 4044 -2102 1466 108 125 4 chr15 36365548 36365788 -65014733 - AluSx SINE Alu -43 269 1 3320 206 52 67 chr15 36365788 36366305 -65014216 + L1MB7 LINE L1 4044 4567 -1579 1974 128 0 3 chr15 36366305 36366595 -65013926 + AluSx SINE Alu 1 289 -23 3320 206 52 67 chr15 36366595 36366921 -65013600 + L1MB7 LINE L1 4567 4875 -1271 672 175 0 32 chr15 36366921 36367047 -65013474 - FLAM_C SINE Alu -10 123 2 3320 206 52 67 chr15 36367047 36367177 -65013344 + L1MB7 LINE L1 4875 5005 -1141 2692 133 64 92 chr15 36367166 36367535 -65012986 + L1MB3 LINE L1 5568 5915 -268 * 2127 118 0 3 chr15 36367535 36367848 -65012673 + AluSq SINE Alu 1 312 -1 2692 133 64 92 chr15 36367848 36368101 -65012420 + L1MB3 LINE L1 5915 6173 -10 3883 183 51 13 chr15 36368113 36369240 -65011281 + L1MB7 LINE L1 4997 6171 -13 210 264 123 28 chr15 36369795 36369901 -65010620 + L2 LINE L2 3188 3303 -10 844 158 67 0 chr15 36369908 36370073 -65010448 - AluJo/FRAM SINE Alu -8 304 129 1457 118 25 112 chr15 36370076 36370285 -65010236 - AluYb8 SINE Alu -3 315 142 2741 19 0 6 chr15 36370285 36370604 -65009917 - AluYb8 SINE Alu -1 317 1 1457 118 25 112 chr15 36370604 36370717 -65009804 - AluYb8 SINE Alu -176 142 21 21 36 0 0 chr15 36370800 36370828 -65009693 + AT_rich Low_complexity Low_complexity 1 28 0 753 159 41 108 chr15 36370964 36371112 -65009409 + MER5A DNA MER1_type 5 138 -51 2142 99 10 0 chr15 36371112 36371416 -65009105 + AluSx SINE Alu 1 307 -5 753 159 41 108 chr15 36371416 36371462 -65009059 + MER5A DNA MER1_type 138 186 -3 390 278 35 56 chr15 36371540 36371994 -65008527 - MER5A DNA MER1_type -6 183 43 2000 109 0 32 chr15 36371648 36371959 -65008562 - AluSq SINE Alu -12 301 1 244 296 40 59 chr15 36371959 36372021 -65008500 + MER5A DNA MER1_type 126 188 -1 2447 44 3 3 chr15 36372038 36372335 -65008186 + AluY SINE Alu 1 297 -14 856 98 0 72 chr15 36372515 36372668 -65007853 - FLAM_C SINE Alu -1 142 1 1823 117 3 28 chr15 36372704 36373022 -65007499 - AluSx SINE Alu 0 311 1 1506 124 0 0 chr15 36373255 36373473 -65007048 - AluSq SINE Alu -93 220 3 1744 149 38 3 chr15 36373497 36373786 -65006735 + AluSg SINE Alu 1 299 -11 2313 59 7 10 chr15 36374406 36374713 -65005808 + AluY SINE Alu 1 306 -5 1444 176 28 11 chr15 36375543 36375827 -65004694 + AluJo SINE Alu 1 289 -23 1234 87 5 5 chr15 36375827 36376012 -65004509 - AluY SINE Alu -2 309 125 1173 67 0 7 chr15 36376137 36376286 -65004235 - AluY SINE Alu -163 148 1 1574 200 3 14 chr15 36377262 36377557 -65002964 + AluJb SINE Alu 1 292 -10 2125 116 3 0 chr15 36377826 36378129 -65002392 - AluSq SINE Alu -3 310 7 1710 132 26 0 chr15 36378168 36378434 -65002087 - AluSx SINE Alu -24 288 16 1903 73 16 0 chr15 36378434 36378704 -65001817 + AluSp SINE Alu 33 308 0 1485 167 17 31 chr15 36378713 36379007 -65001514 + AluJb SINE Alu 1 290 -22 1934 114 3 57 chr15 36379235 36379369 -65001152 + AluSx SINE Alu 1 141 -171 2089 96 3 14 chr15 36379369 36379661 -65000860 + AluSp SINE Alu 1 289 -24 1934 114 3 57 chr15 36379661 36379841 -65000680 + AluSx SINE Alu 141 298 -14 2094 104 7 10 chr15 36380434 36380731 -64999790 + AluSx SINE Alu 1 296 -16 1751 144 0 49 chr15 36380805 36381111 -64999410 - AluSq SINE Alu -22 291 1 1737 101 8 0 chr15 36382316 36382563 -64997958 - AluSp SINE Alu -11 302 54 257 278 157 19 chr15 36382852 36382960 -64997561 - MER5A DNA MER1_type -30 159 37 2116 102 20 3 chr15 36383569 36383862 -64996659 + AluSx SINE Alu 1 298 -14 1192 98 0 49 chr15 36385819 36386003 -64994518 + AluSq SINE Alu 1 175 -138 1132 101 13 0 chr15 36386107 36386265 -64994256 + AluSg/x SINE Alu 127 286 -24 1735 147 28 0 chr15 36386419 36386704 -64993817 + AluSx SINE Alu 1 293 -19 704 175 40 0 chr15 36386845 36386971 -64993550 + AluJo SINE Alu 5 135 -177 2179 98 10 3 chr15 36387236 36387542 -64992979 - AluSx SINE Alu -4 308 1 1456 136 87 45 chr15 36387636 36387923 -64992598 - AluJo SINE Alu -13 299 1 1892 146 7 0 chr15 36388754 36389049 -64991472 + AluSx SINE Alu 1 297 -15 205 244 0 0 chr15 36390532 36390573 -64989948 + GA-rich Low_complexity Low_complexity 4 44 0 785 128 0 0 chr15 36391020 36391137 -64989384 - AluSx SINE Alu -4 306 190 999 105 0 14 chr15 36391137 36391280 -64989241 - AluSx SINE Alu -171 142 2 2343 56 0 10 chr15 36391849 36392154 -64988367 + AluY SINE Alu 1 302 -9 185 232 14 87 chr15 36393590 36393659 -64986862 - L2 LINE L2 -205 3067 3004 2104 113 0 0 chr15 36394220 36394512 -64986009 - AluSx SINE Alu -16 296 5 1940 132 3 0 chr15 36394524 36394819 -64985702 - AluSx SINE Alu -16 296 1 1536 171 14 11 chr15 36394850 36395156 -64985365 + AluJo SINE Alu 1 307 0 532 164 23 4 chr15 36395592 36395690 -64984831 + Tigger3(Golem) DNA MER2_type 15 111 -2918 1293 148 117 34 chr15 36395690 36395827 -64984694 - AluJo SINE Alu -18 294 170 2005 93 0 0 chr15 36395827 36396096 -64984425 - AluSx SINE Alu -3 309 41 1293 148 117 34 chr15 36396096 36396222 -64984299 - AluJo SINE Alu -142 170 9 2122 81 54 3 chr15 36398864 36399159 -64981362 + AluSg SINE Alu 1 310 0 270 320 92 65 chr15 36399330 36399483 -64981038 + MIR3 SINE MIR 21 177 -31 2290 53 3 56 chr15 36399744 36400064 -64980457 - AluSx SINE Alu -9 303 1 183 80 0 0 chr15 36400432 36400457 -64980064 + (CGGG)n Simple_repeat Simple_repeat 4 28 0 358 98 333 29 chr15 36401083 36401185 -64979336 - FLAM_C SINE Alu 0 133 1 621 181 26 0 chr15 36401429 36401545 -64978976 + AluJb SINE Alu 121 239 -73 1534 118 0 0 chr15 36401556 36401776 -64978745 + AluSg/x SINE Alu 67 286 -26 190 300 33 105 chr15 36401867 36401959 -64978562 + L2 LINE L2 3029 3099 -173 1942 123 0 17 chr15 36401959 36402261 -64978260 - AluSp SINE Alu -16 297 1 190 300 33 105 chr15 36402261 36402378 -64978143 + L2 LINE L2 3099 3223 -49 1207 153 0 5 chr15 36402967 36403163 -64977358 + AluSg SINE Alu 1 195 -115 601 49 0 49 chr15 36403164 36403246 -64977275 + AluSq/x SINE Alu 66 143 -170 1194 188 29 8 chr15 36403246 36403485 -64977036 - AluJo SINE Alu -68 244 1 1668 182 25 0 chr15 36403508 36403794 -64976727 - AluJo SINE Alu -19 293 1 848 180 19 31 chr15 36403794 36403921 -64976600 - AluJo SINE Alu -177 135 11 378 269 78 0 chr15 36403944 36404085 -64976436 - L1ME LINE L1 -408 5762 5611 32 26 0 0 chr15 36404156 36404195 -64976326 + AT_rich Low_complexity Low_complexity 1 39 0 2205 77 3 10 chr15 36404243 36404541 -64975980 + AluY SINE Alu 1 296 -15 1480 148 81 25 chr15 36404550 36404834 -64975687 + AluJo SINE Alu 1 300 -12 1571 161 54 14 chr15 36404916 36405065 -64975456 - AluSx SINE Alu -15 297 155 1892 119 6 41 chr15 36405065 36405384 -64975137 - AluSx SINE Alu -4 308 1 1571 161 54 14 chr15 36405384 36405514 -64975007 - AluSx SINE Alu -157 155 7 660 186 0 0 chr15 36406641 36406754 -64973767 - AluSg/x SINE Alu -3 306 194 2272 88 3 0 chr15 36406784 36407079 -64973442 - AluSx SINE Alu -16 296 1 569 198 0 0 chr15 36407328 36407424 -64973097 - FRAM SINE Alu -76 100 5 506 253 12 12 chr15 36407476 36407638 -64972883 - L1ME LINE L1 -730 5434 5273 2304 57 6 22 chr15 36407649 36407965 -64972556 - AluY SINE Alu 0 311 1 2318 83 3 0 chr15 36408275 36408587 -64971934 + AluSp SINE Alu 1 313 0 23 33 0 0 chr15 36409389 36409419 -64971102 + GC_rich Low_complexity Low_complexity 1 30 0 220 175 125 50 chr15 36410264 36410344 -64970177 + MIR3 SINE MIR 98 183 -25 267 281 83 21 chr15 36410513 36410609 -64969912 + MER5A DNA MER1_type 63 164 -25 1005 189 23 46 chr15 36410621 36410881 -64969640 - L1MB8 LINE L1 -7 6171 5918 949 157 18 12 chr15 36410881 36411047 -64969474 - FRAM SINE Alu -9 167 1 543 134 49 0 chr15 36412230 36412312 -64968209 - AluJb SINE Alu -18 294 209 324 286 118 0 chr15 36412393 36412512 -64968009 + MIR SINE MIR 84 216 -46 22 0 0 0 chr15 36413318 36413340 -64967181 + AT_rich Low_complexity Low_complexity 1 22 0 651 227 86 56 chr15 36417019 36417217 -64963304 - MER3 DNA MER1_type -5 204 1 2240 104 3 0 chr15 36418401 36418708 -64961813 - AluSx SINE Alu -4 308 1 180 176 0 0 chr15 36422715 36422749 -64957772 + T-rich Low_complexity Low_complexity 1 34 0 2293 80 3 0 chr15 36422885 36423184 -64957337 + AluSq SINE Alu 1 300 -13 515 236 0 14 chr15 36423252 36423400 -64957121 + L1MB8 LINE L1 6033 6178 0 968 157 30 30 chr15 36423494 36423660 -64956861 + FRAM SINE Alu 1 166 0 2327 89 0 0 chr15 36423696 36423999 -64956522 - AluSg1 SINE Alu -6 303 1 180 255 76 125 chr15 36424040 36424104 -64956417 + MIR SINE MIR 88 154 -108 1581 151 32 18 chr15 36424104 36424388 -64956133 + AluSx SINE Alu 1 288 -24 180 255 76 125 chr15 36424388 36424507 -64956014 + MIR SINE MIR 154 262 0 520 260 157 2 chr15 36425748 36425980 -64954541 + L1ME LINE L1 5511 5723 -398 2013 107 7 0 chr15 36425981 36426301 -64954220 + AluSx SINE Alu 1 322 0 2038 112 3 19 chr15 36426313 36426625 -64953896 + AluSx SINE Alu 1 307 -5 2001 132 0 0 chr15 36426681 36426969 -64953552 + AluSx SINE Alu 16 303 -9 32 0 0 0 chr15 36427001 36427033 -64953488 + AT_rich Low_complexity Low_complexity 1 32 0 2222 82 0 3 chr15 36427090 36427382 -64953139 + AluY SINE Alu 3 293 -18 1534 194 10 7 chr15 36427391 36427690 -64952831 + AluJo SINE Alu 2 301 -11 991 182 6 0 chr15 36427709 36427890 -64952631 + AluJo SINE Alu 122 303 -9 1887 158 3 0 chr15 36429030 36429328 -64951193 + AluSx SINE Alu 1 299 -13 2079 101 39 0 chr15 36429393 36429679 -64950842 + AluSq SINE Alu 1 297 -16 516 195 34 0 chr15 36429906 36430024 -64950497 - MIR SINE MIR -54 208 87 840 213 85 5 chr15 36430053 36430241 -64950280 + L1MDa LINE L1 353 555 -5985 2031 112 0 7 chr15 36430264 36430594 -64949927 + AluSq SINE Alu 1 313 0 412 347 21 6 chr15 36430791 36430992 -64949529 + MIR SINE MIR 3 205 -57 937 123 0 0 chr15 36431833 36431963 -64948558 + FLAM_C SINE Alu 3 132 -1 316 167 13 90 chr15 36432709 36432787 -64947734 + L2 LINE L2 3238 3309 -4 743 197 8 0 chr15 36433731 36433863 -64946658 + AluJo SINE Alu 2 134 -178 1981 123 10 0 chr15 36433864 36434165 -64946356 + AluY SINE Alu 1 304 -7 1035 185 70 76 chr15 36434623 36434755 -64945766 + AluJo SINE Alu 3 134 -168 2378 50 3 3 chr15 36434755 36435054 -64945467 + AluY SINE Alu 1 299 -12 1035 185 70 76 chr15 36435054 36435223 -64945298 + AluJo SINE Alu 134 302 0 968 66 15 0 chr15 36436137 36436274 -64944247 + AluY SINE Alu 173 311 0 2183 108 0 16 chr15 36436632 36436948 -64943573 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr15 36437364 36437396 -64943125 + AT_rich Low_complexity Low_complexity 1 32 0 893 130 0 0 chr15 36437396 36437519 -64943002 + FLAM_C SINE Alu 1 123 -10 204 40 0 0 chr15 36437523 36437548 -64942973 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1947 109 11 3 chr15 36437586 36437893 -64942628 + AluSx SINE Alu 1 309 0 2271 77 0 0 chr15 36437903 36438212 -64942309 + AluSq SINE Alu 1 309 0 1072 144 0 23 chr15 36438873 36439047 -64941474 + AluJo SINE Alu 1 170 -142 316 310 13 76 chr15 36439111 36439233 -64941288 + MIR3 SINE MIR 46 157 -51 2317 47 20 3 chr15 36439233 36439532 -64940989 - AluY SINE Alu -7 304 1 316 310 13 76 chr15 36439532 36439567 -64940954 + MIR3 SINE MIR 157 193 -15 798 262 90 4 chr15 36440058 36440291 -64940230 - MIR SINE MIR -3 259 7 327 301 91 0 chr15 36441080 36441223 -64939298 - L1MB3 LINE L1 -109 6074 5919 818 130 8 0 chr15 36441224 36441347 -64939174 - AluSq/x SINE Alu -179 133 10 23 0 0 0 chr15 36441351 36441374 -64939147 + AT_rich Low_complexity Low_complexity 1 23 0 550 200 30 52 chr15 36441467 36441602 -64938919 + FLAM_C SINE Alu 1 132 -1 184 160 0 40 chr15 36441602 36441652 -64938869 + GA-rich Low_complexity Low_complexity 1 48 0 229 275 25 62 chr15 36441773 36441853 -64938668 + L2 LINE L2 3193 3269 -3 2200 89 10 0 chr15 36441952 36442245 -64938276 + AluSg SINE Alu 1 296 -14 307 294 25 50 chr15 36442320 36442480 -64938041 + L1ME LINE L1 5507 5662 -459 888 259 107 10 chr15 36442493 36442782 -64937739 - L2 LINE L2 -2 3311 2995 1161 215 24 14 chr15 36442782 36443105 -64937416 + L1MB3 LINE L1 5339 5661 -522 1443 178 20 41 chr15 36443105 36443398 -64937123 - AluJb SINE Alu -19 293 7 1676 192 0 0 chr15 36443436 36443722 -64936799 + AluJb SINE Alu 12 297 -15 2916 145 2 47 chr15 36443727 36443747 -64936774 + L1MB3 LINE L1 5662 5681 -502 2248 96 7 0 chr15 36443747 36444049 -64936472 - AluSq SINE Alu -9 304 1 2152 127 0 0 chr15 36444051 36444359 -64936162 - AluSx SINE Alu -4 308 1 2916 145 2 47 chr15 36444359 36444873 -64935648 + L1MB3 LINE L1 5682 6175 -8 710 265 131 11 chr15 36444880 36445148 -64935373 - L2 LINE L2 -412 2902 2603 2465 45 0 19 chr15 36445275 36445587 -64934934 + AluY SINE Alu 1 306 -5 272 196 93 56 chr15 36445888 36445995 -64934526 - MER58C DNA MER1_type -1 214 104 571 183 119 0 chr15 36446048 36446174 -64934347 - L1M3 LINE L1 -549 5631 5491 805 176 0 0 chr15 36446176 36446312 -64934209 - FRAM SINE Alu -1 175 40 817 146 6 53 chr15 36446346 36446408 -64934113 - L1M3 LINE L1 -683 5495 5432 2068 111 17 0 chr15 36446408 36446705 -64933816 - AluSx SINE Alu -10 302 1 817 146 6 53 chr15 36446705 36446813 -64933708 - L1M3 LINE L1 -746 5432 5333 639 179 0 0 chr15 36446817 36446923 -64933598 - FRAM SINE Alu -1 175 70 350 179 54 89 chr15 36446969 36447042 -64933479 - MER58C DNA MER1_type -99 116 47 1767 108 104 0 chr15 36447042 36447310 -64933211 + AluSg1 SINE Alu 1 296 -13 350 179 54 89 chr15 36447310 36447348 -64933173 - MER58C DNA MER1_type -168 47 9 263 226 16 0 chr15 36447350 36447412 -64933109 - MIR SINE MIR -58 150 88 558 315 67 55 chr15 36447459 36447786 -64932735 - L2 LINE L2 -1 3271 2941 2282 48 61 0 chr15 36447812 36448105 -64932416 + AluY SINE Alu 1 311 0 871 344 66 16 chr15 36448141 36448506 -64932015 - L2 LINE L2 -571 2743 2347 2127 110 7 0 chr15 36448506 36448806 -64931715 - AluSx SINE Alu -10 302 1 871 344 66 16 chr15 36448806 36448926 -64931595 - L2 LINE L2 -967 2347 2234 283 240 232 16 chr15 36448989 36449114 -64931407 + MIR3 SINE MIR 4 155 -53 1743 167 7 3 chr15 36449159 36449464 -64931057 + AluJb SINE Alu 1 306 -6 1488 187 20 23 chr15 36450309 36450608 -64929913 - AluJo SINE Alu -14 298 1 1603 153 18 64 chr15 36450635 36450961 -64929560 + AluJo SINE Alu 1 311 -1 2158 107 0 0 chr15 36451058 36451349 -64929172 + AluSx SINE Alu 1 291 -21 2230 99 0 0 chr15 36451434 36451736 -64928785 + AluSg SINE Alu 1 302 -8 1243 87 0 0 chr15 36451736 36451897 -64928624 + AluSg/x SINE Alu 134 294 -18 2143 77 40 3 chr15 36451899 36452199 -64928322 + AluY SINE Alu 1 311 0 304 300 25 0 chr15 36452461 36452541 -64927980 + LTR16C LTR ERVL 97 178 -313 2426 68 7 0 chr15 36452548 36452855 -64927666 - AluSg SINE Alu -1 309 1 447 70 0 0 chr15 36452869 36452949 -64927572 - Alu SINE Alu 0 305 226 180 158 0 0 chr15 36454041 36454079 -64926442 + (CAGGG)n Simple_repeat Simple_repeat 3 40 0 259 283 160 13 chr15 36454247 36454404 -64926117 + MIR SINE MIR 15 191 -62 484 232 91 95 chr15 36454823 36455064 -64925457 + MIR SINE MIR 23 262 0 504 115 0 0 chr15 36456626 36456704 -64923817 + MADE1 DNA Mariner 1 78 -2 840 245 62 21 chr15 36457250 36457491 -64923030 + MIR SINE MIR 2 252 -10 581 183 7 88 chr15 36457523 36457660 -64922861 - MER3 DNA MER1_type -83 126 1 922 214 48 5 chr15 36457676 36457886 -64922635 + MER20 DNA MER1_type 1 219 0 546 261 55 50 chr15 36457886 36457930 -64922591 - MIR SINE MIR -55 207 165 628 142 39 39 chr15 36457930 36458057 -64922464 + FLAM_C SINE Alu 1 127 -6 546 261 55 50 chr15 36458057 36458211 -64922310 - MIR SINE MIR -97 165 8 2532 90 0 0 chr15 36458604 36458935 -64921586 + AluSg SINE Alu 1 331 0 2372 96 0 22 chr15 36462771 36463085 -64917436 + AluSx SINE Alu 1 307 -5 2051 170 151 51 chr15 36463086 36463130 -64917391 + L1MC1 LINE L1 5239 5277 -869 2023 129 18 0 chr15 36463130 36463415 -64917106 + AluSx SINE Alu 1 290 -22 2123 128 14 0 chr15 36463415 36463712 -64916809 + AluSx SINE Alu 1 301 -11 2051 170 151 51 chr15 36463416 36463953 -64916568 + L1MC1 LINE L1 5277 5759 -387 2129 124 10 3 chr15 36463953 36464252 -64916269 - AluJb SINE Alu -11 301 1 2051 170 151 51 chr15 36464252 36464349 -64916172 + L1MC1 LINE L1 5759 5214 -932 2656 49 3 0 chr15 36464349 36464653 -64915868 + AluY SINE Alu 1 305 -6 2051 170 151 51 chr15 36464653 36464866 -64915655 + L1MC1 LINE L1 5213 5403 -743 236 174 0 37 chr15 36464882 36464947 -64915574 + Alu SINE Alu 250 290 -12 * 2036 159 58 14 chr15 36464948 36465383 -64915138 + L1MC1 LINE L1 5880 6333 0 829 176 68 179 chr15 36465383 36465648 -64914873 - Charlie1a DNA MER1_type -2424 337 122 1804 97 48 12 chr15 36465648 36465896 -64914625 + AluSx SINE Alu 43 299 -13 829 176 68 179 chr15 36465896 36466004 -64914517 - Charlie1a DNA MER1_type -2639 122 4 2599 57 3 0 chr15 36466208 36466506 -64914015 - AluSp SINE Alu -14 299 1 2248 106 0 3 chr15 36466507 36466799 -64913722 - AluSx SINE Alu -21 291 1 332 282 72 64 chr15 36466815 36466911 -64913610 + L1MEc LINE L1 876 970 -5426 2114 118 3 37 chr15 36466911 36467234 -64913287 + AluSx SINE Alu 1 312 0 332 282 72 64 chr15 36467234 36467245 -64913276 + L1MEc LINE L1 970 979 -5417 653 170 15 37 chr15 36467245 36467380 -64913141 + FLAM_C SINE Alu 2 133 0 332 282 72 64 chr15 36467380 36467397 -64913124 + L1MEc LINE L1 979 994 -5402 2145 117 13 3 chr15 36467397 36467697 -64912824 + AluSx SINE Alu 1 303 -9 332 282 72 64 chr15 36467697 36467946 -64912575 + L1MEc LINE L1 994 1254 -5142 2204 128 0 0 chr15 36467987 36468291 -64912230 + AluSx SINE Alu 1 304 -8 838 107 8 46 chr15 36468337 36468468 -64912053 + FLAM_C SINE Alu 1 126 -7 340 113 0 0 chr15 36468472 36468534 -64911987 + Tigger3(Golem) DNA MER2_type 2507 2568 -461 1020 193 0 117 chr15 36468544 36468793 -64911728 + AluJo SINE Alu 1 220 -92 2270 94 10 7 chr15 36468797 36469094 -64911427 - AluSp SINE Alu -15 298 1 1752 135 47 44 chr15 36469153 36469307 -64911214 - AluJb SINE Alu -13 299 142 2316 97 20 0 chr15 36469307 36469606 -64910915 - AluSq SINE Alu -8 305 1 1752 135 47 44 chr15 36469606 36469748 -64910773 - AluJb SINE Alu -170 142 2 2524 125 75 7 chr15 36469754 36470179 -64910342 + Tigger3(Golem) DNA MER2_type 2574 3027 -2 747 126 39 24 chr15 36470228 36470355 -64910166 + FLAM_C SINE Alu 5 133 0 1928 164 10 3 chr15 36470718 36471011 -64909510 - AluJb SINE Alu -17 295 1 527 280 142 19 chr15 36471092 36471344 -64909177 - L2 LINE L2 -1292 2022 1736 2430 108 0 3 chr15 36471344 36471658 -64908863 + AluSq SINE Alu 1 313 0 357 294 157 13 chr15 36472754 36472907 -64907614 - MER5B DNA MER1_type -3 175 1 595 255 43 16 chr15 36472950 36473028 -64907493 + MIR SINE MIR 74 148 -114 846 167 0 0 chr15 36473028 36473160 -64907361 + FLAM_C SINE Alu 1 132 -1 595 255 43 16 chr15 36473160 36473265 -64907256 + MIR SINE MIR 148 262 0 780 183 62 67 chr15 36473465 36473569 -64906952 + MER3 DNA MER1_type 3 106 -103 2299 102 13 0 chr15 36473569 36473873 -64906648 + AluSp SINE Alu 1 308 -5 780 183 62 67 chr15 36473873 36473976 -64906545 + MER3 DNA MER1_type 106 209 0 1894 157 13 16 chr15 36473981 36474332 -64906189 + AluJb SINE Alu 1 350 0 2272 106 0 3 chr15 36475925 36476226 -64904295 - AluSg SINE Alu -10 300 1 823 153 0 0 chr15 36476245 36476376 -64904145 + FLAM_C SINE Alu 1 131 -2 1270 185 22 63 chr15 36476401 36476502 -64904019 + AluJo SINE Alu 37 141 -171 2446 106 0 0 chr15 36476502 36476813 -64903708 + AluSx SINE Alu 1 311 -1 1270 185 22 63 chr15 36476813 36476981 -64903540 + AluJo SINE Alu 141 295 -17 346 285 229 28 chr15 36477077 36477256 -64903265 + MIR SINE MIR 20 234 -28 192 321 0 0 chr15 36477556 36477612 -64902909 - L2 LINE L2 0 3272 3217 851 171 0 0 chr15 36477638 36477767 -64902754 + AluJo/FLAM SINE Alu 5 133 -179 2406 94 0 19 chr15 36477767 36478111 -64902410 + AluSq SINE Alu 1 313 0 671 298 85 58 chr15 36478115 36478811 -64901710 - L2 LINE L2 -69 3203 2495 2599 57 3 16 chr15 36478893 36479210 -64901311 + AluSp SINE Alu 1 313 0 2445 76 7 0 chr15 36479656 36479960 -64900561 + AluY SINE Alu 1 306 -5 456 263 56 62 chr15 36479964 36480018 -64900503 - L1ME4a LINE L1 -11 6110 6057 2017 98 58 4 chr15 36480018 36480292 -64900229 + AluSg SINE Alu 1 289 -21 456 263 56 62 chr15 36480292 36480416 -64900105 - L1ME4a LINE L1 -64 6057 5933 2293 106 3 0 chr15 36480429 36480443 -64900078 - AluSx SINE Alu -8 304 292 799 21 27 64 chr15 36480443 36480630 -64899891 + (TA)n Simple_repeat Simple_repeat 1 180 0 2293 106 3 0 chr15 36480630 36480918 -64899603 - AluSx SINE Alu -20 292 1 2079 104 35 10 chr15 36481203 36481357 -64899164 - AluSx SINE Alu -16 296 130 2557 72 0 3 chr15 36481357 36481663 -64898858 - AluSq SINE Alu -8 305 1 2079 104 35 10 chr15 36481663 36481797 -64898724 - AluSx SINE Alu -182 130 1 461 279 139 0 chr15 36481837 36482038 -64898483 + MER112 DNA MER1_type 9 237 -23 523 310 35 13 chr15 36482055 36482281 -64898240 - L1ME4a LINE L1 -340 5781 5551 1358 239 92 43 chr15 36482326 36482836 -64897685 - MLT1F1 LTR MaLR -32 535 1 485 257 49 27 chr15 36482861 36483044 -64897477 - L1MA7 LINE L1 -116 6175 5989 1451 57 21 0 chr15 36483092 36483311 -64897210 + L1PA10 LINE L1 5953 6175 0 2396 92 13 0 chr15 36483318 36483622 -64896899 + AluSp SINE Alu 5 312 -1 2403 96 3 0 chr15 36483662 36483955 -64896566 + AluSp SINE Alu 1 294 -19 1863 146 125 0 chr15 36483959 36484302 -64896219 - MER57A LTR ERV1 -17 386 1 1908 159 3 3 chr15 36484354 36484643 -64895878 + AluJo SINE Alu 1 289 -23 600 240 130 66 chr15 36484720 36485230 -64895291 - MLT1G1 LTR MaLR 0 595 2 2163 148 0 3 chr15 36485482 36485792 -64894729 + AluSx SINE Alu 1 309 -3 229 257 162 9 chr15 36485894 36485999 -64894522 + MIR SINE MIR 31 151 -57 2338 78 0 0 chr15 36485999 36486312 -64894209 - AluSc SINE Alu 0 313 1 720 136 85 0 chr15 36486328 36486446 -64894075 - FLAM_C SINE Alu -5 128 1 236 340 53 20 chr15 36486795 36486945 -64893576 - L1ME4a LINE L1 -11 6110 5956 2028 146 0 13 chr15 36487068 36487377 -64893144 - AluJo SINE Alu -7 305 1 4035 111 32 14 chr15 36487377 36488025 -64892496 - L1PA16 LINE L1 -11 6155 5496 198 71 0 0 chr15 36488026 36488054 -64892467 + (TTG)n Simple_repeat Simple_repeat 2 29 0 610 234 81 62 chr15 36488056 36488288 -64892233 - MIR SINE MIR -6 256 6 749 229 65 16 chr15 36488517 36488762 -64891759 + MIR SINE MIR 5 261 -1 2151 111 11 0 chr15 36488848 36489166 -64891355 + AluSx SINE Alu 1 321 0 26 30 0 0 chr15 36490275 36490308 -64890213 + GC_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr15 36490931 36490959 -64889562 + GC_rich Low_complexity Low_complexity 1 28 0 1926 110 0 71 chr15 36491491 36491801 -64888720 - AluSq SINE Alu 0 313 26 413 95 0 32 chr15 36491836 36491899 -64888622 - 7SK RNA RNA -132 61 1 375 287 22 15 chr15 36492754 36492890 -64887631 - MIR SINE MIR -79 183 47 205 250 0 0 chr15 36493877 36493917 -64886604 + C-rich Low_complexity Low_complexity 3 42 0 637 298 37 0 chr15 36494689 36494880 -64885641 + L1MC4a LINE L1 5558 5755 -2053 295 243 64 50 chr15 36494990 36495130 -64885391 + L1MC4a LINE L1 5754 5895 -1913 1637 185 22 35 chr15 36495281 36495321 -64885200 - AluJb SINE Alu -2 310 271 2549 69 0 0 chr15 36495321 36495625 -64884896 + AluY SINE Alu 1 304 -7 1637 185 22 35 chr15 36495625 36495898 -64884623 - AluJb SINE Alu -41 271 1 472 261 31 8 chr15 36496029 36496159 -64884362 + MIR SINE MIR 21 153 -109 1027 218 60 4 chr15 36496200 36496416 -64884105 - MER58B DNA MER1_type -2079 341 108 2462 77 10 3 chr15 36496416 36496726 -64883795 - AluSp SINE Alu -1 312 1 1027 218 60 4 chr15 36496726 36496757 -64883764 - MER58B DNA MER1_type -2312 108 80 2306 99 7 3 chr15 36497502 36497806 -64882715 - AluSc SINE Alu -4 305 1 1322 196 152 44 chr15 36498032 36498094 -64882427 - MLT1D LTR MaLR -1 504 450 2221 113 0 0 chr15 36498094 36498401 -64882120 + AluSx SINE Alu 1 307 0 1322 196 152 44 chr15 36498401 36498792 -64881729 - MLT1D LTR MaLR -55 450 1 345 24 0 0 chr15 36498978 36499020 -64881501 + (TG)n Simple_repeat Simple_repeat 2 43 0 835 188 61 0 chr15 36499081 36499246 -64881275 + FAM SINE Alu 1 175 0 702 218 182 53 chr15 36501240 36501457 -64879064 + MER113 DNA MER1_type? 3 191 -330 1985 165 0 0 chr15 36501457 36501760 -64878761 + AluJb SINE Alu 2 304 -8 702 218 182 53 chr15 36501760 36501832 -64878689 + MER113 DNA MER1_type? 191 252 -269 777 152 8 0 chr15 36501832 36501957 -64878564 + FLAM_A SINE Alu 1 126 -7 702 218 182 53 chr15 36501957 36502024 -64878497 + MER113 DNA MER1_type? 252 406 -115 327 280 140 7 chr15 36502708 36502858 -64877663 + MER117 DNA MER1_type 4 173 -24 181 213 85 0 chr15 36504570 36504617 -64875904 - L2 LINE L2 -1 3312 3262 280 333 82 0 chr15 36504657 36504792 -64875729 - MIR SINE MIR -38 224 79 411 230 44 44 chr15 36504874 36505009 -64875512 - L1ME3A LINE L1 -9 6161 6027 224 323 16 0 chr15 36505476 36505538 -64874983 + L2 LINE L2 3199 3261 -11 230 309 15 0 chr15 36505740 36505808 -64874713 - L2 LINE L2 -56 3257 3189 2433 106 0 0 chr15 36506317 36506628 -64873893 + AluSx SINE Alu 1 311 -1 2719 154 49 24 chr15 36506635 36507141 -64873380 + L1MB3 LINE L1 5664 6182 -1 2222 100 3 0 chr15 36507348 36507648 -64872873 + AluSx SINE Alu 1 301 -11 375 269 90 45 chr15 36507783 36507939 -64872582 + Charlie8 DNA MER1_type 1 163 -2254 2068 110 0 23 chr15 36508067 36508375 -64872146 - AluSp SINE Alu -12 301 1 2186 90 7 0 chr15 36509000 36509300 -64871221 - AluSx SINE Alu -10 302 1 2060 96 0 26 chr15 36509659 36509961 -64870560 - AluY SINE Alu -11 300 7 316 287 9 26 chr15 36510183 36510298 -64870223 - MIR SINE MIR -69 139 27 191 301 68 58 chr15 36510577 36510680 -64869841 - MIR SINE MIR -62 146 43 192 254 63 0 chr15 36511479 36511542 -64868979 + MIR3 SINE MIR 12 78 -130 1888 161 0 0 chr15 36511603 36511894 -64868627 + AluJb SINE Alu 1 291 -21 2218 105 0 19 chr15 36511897 36512211 -64868310 + AluSx SINE Alu 3 310 -2 2284 99 0 0 chr15 36512837 36513131 -64867390 - AluSx SINE Alu -18 294 1 577 285 90 100 chr15 36513570 36513803 -64866718 + L1ME4a LINE L1 5704 5938 -183 2098 114 7 0 chr15 36513803 36514101 -64866420 + AluSx SINE Alu 1 300 -12 577 285 90 100 chr15 36514101 36514181 -64866340 + L1ME4a LINE L1 5938 6017 -104 2231 86 7 0 chr15 36514181 36514472 -64866049 - AluSc SINE Alu -16 293 1 577 285 90 100 chr15 36514472 36514567 -64865954 + L1ME4a LINE L1 6017 6109 -12 1532 187 13 43 chr15 36514572 36514877 -64865644 + AluJo SINE Alu 1 296 -16 2248 107 0 0 chr15 36514878 36515178 -64865343 + AluSx SINE Alu 1 300 -12 1133 138 0 17 chr15 36515178 36515341 -64865180 + AluSg/x SINE Alu 134 295 -17 2481 68 0 0 chr15 36515341 36515652 -64864869 + AluY SINE Alu 1 311 0 1133 138 0 17 chr15 36515652 36515669 -64864852 + AluSg/x SINE Alu 295 311 -1 429 268 63 16 chr15 36516821 36516948 -64863573 - MIR3 SINE MIR -32 176 44 366 132 0 0 chr15 36517186 36517262 -64863259 + (CA)n Simple_repeat Simple_repeat 1 76 0 2118 119 0 0 chr15 36517382 36517684 -64862837 + AluSg SINE Alu 1 302 -8 21 71 0 0 chr15 36520423 36520465 -64860056 + GC_rich Low_complexity Low_complexity 1 42 0 227 190 17 17 chr15 36520842 36520900 -64859621 + L1MC/D LINE L1 5856 5913 -1895 742 232 71 0 chr15 36521029 36521184 -64859337 + FRAM SINE Alu 1 166 0 573 161 9 36 chr15 36521191 36521303 -64859218 - Tigger2 DNA MER2_type -2 2716 2608 2208 92 0 22 chr15 36521303 36521617 -64858904 + AluSx SINE Alu 2 308 -4 995 141 7 0 chr15 36521618 36521795 -64858726 + AluSg/x SINE Alu 135 312 0 2280 82 3 16 chr15 36521795 36522110 -64858411 + AluY SINE Alu 1 311 0 1112 93 0 0 chr15 36522140 36522280 -64858241 - AluSq/x SINE Alu -170 142 3 824 128 77 13 chr15 36522324 36522480 -64858041 - Tigger2 DNA MER2_type -270 2448 2283 1492 163 17 30 chr15 36522480 36522781 -64857740 - AluJo SINE Alu -15 297 1 389 162 15 0 chr15 36522793 36522861 -64857660 - Tigger2 DNA MER2_type -2649 69 1 2299 65 3 3 chr15 36523489 36523779 -64856742 + AluSx SINE Alu 3 292 -20 1622 162 29 0 chr15 36523836 36524114 -64856407 - AluSx SINE Alu 0 312 27 2720 13 0 13 chr15 36524445 36524759 -64855762 - AluYb8 SINE Alu -8 310 1 418 288 104 25 chr15 36524780 36524943 -64855578 + MIR3 SINE MIR 33 208 0 423 56 0 0 chr15 36524985 36525039 -64855482 + (CA)n Simple_repeat Simple_repeat 2 55 0 331 82 0 0 chr15 36525515 36525564 -64854957 + L1MC3 LINE L1 6762 6810 -975 186 71 0 0 chr15 36525575 36525603 -64854918 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1544 149 36 58 chr15 36525612 36525921 -64854600 + AluJb SINE Alu 2 303 -9 201 74 0 0 chr15 36526119 36526146 -64854375 + (TG)n Simple_repeat Simple_repeat 2 28 0 2064 118 3 3 chr15 36526265 36526561 -64853960 - AluSx SINE Alu -16 296 1 2179 116 0 3 chr15 36526734 36527045 -64853476 + AluSx SINE Alu 1 310 -2 262 157 24 48 chr15 36527285 36527368 -64853153 + (TATAA)n Simple_repeat Simple_repeat 2 82 0 1644 179 3 7 chr15 36527449 36527751 -64852770 - AluJb SINE Alu -10 302 2 2083 118 7 0 chr15 36528140 36528444 -64852077 - AluSx SINE Alu 0 312 7 2225 94 3 0 chr15 36528465 36528772 -64851749 - AluSg SINE Alu -2 308 1 627 169 62 39 chr15 36528773 36528903 -64851618 - FLAM_A SINE Alu 0 133 1 240 207 52 0 chr15 36528905 36528963 -64851558 - L1ME LINE L1 -288 5876 5816 992 153 33 6 chr15 36528974 36529157 -64851364 - AluJo SINE Alu -4 308 121 1386 169 89 28 chr15 36529159 36529196 -64851325 - L1ME LINE L1 -352 5812 5779 2025 127 0 0 chr15 36529196 36529496 -64851025 - AluSq SINE Alu -5 308 9 1386 169 89 28 chr15 36529496 36529784 -64850737 - L1ME LINE L1 -385 5779 5467 2142 105 7 0 chr15 36529784 36530079 -64850442 + AluSq SINE Alu 2 298 -15 2084 118 0 0 chr15 36530081 36530370 -64850151 + AluSg SINE Alu 1 289 -21 23 0 0 0 chr15 36530370 36530393 -64850128 + AT_rich Low_complexity Low_complexity 1 23 0 1577 124 0 4 chr15 36530449 36530683 -64849838 - AluSg SINE Alu -77 233 1 787 174 0 0 chr15 36530735 36530850 -64849671 + FLAM_C SINE Alu 2 116 -27 213 333 0 0 chr15 36530971 36531025 -64849496 - L2 LINE L2 0 3272 3219 1799 91 121 11 chr15 36531246 36531511 -64849010 - AluSg SINE Alu -16 294 1 229 294 0 59 chr15 36531541 36531626 -64848895 - MIR3 SINE MIR -39 169 90 375 180 0 8 chr15 36531835 36531847 -64848674 - AluJ/FLAM SINE Alu -224 78 67 1524 128 0 25 chr15 36531847 36532089 -64848432 - AluJo SINE Alu -5 307 72 2297 95 0 0 chr15 36532089 36532393 -64848128 - AluSq SINE Alu -9 304 1 375 180 0 8 chr15 36532393 36532458 -64848063 - AluJ/FLAM SINE Alu -233 69 14 579 292 58 13 chr15 36532469 36532695 -64847826 - Charlie2 DNA MER1_type -2626 236 1 997 139 61 6 chr15 36533264 36533429 -64847092 - AluSg/x SINE Alu -4 306 133 1791 158 86 53 chr15 36533436 36533866 -64846655 + L1MC3 LINE L1 7076 7519 -266 1108 148 43 74 chr15 36533866 36533985 -64846536 - MER44D DNA MER2_type -1972 519 398 2348 72 3 10 chr15 36533985 36534291 -64846230 + AluSp SINE Alu 1 304 -9 2132 122 0 0 chr15 36534300 36534604 -64845917 + AluSx SINE Alu 1 304 -8 1108 148 43 74 chr15 36534604 36534731 -64845790 - MER44D DNA MER2_type -2101 390 1 271 173 30 179 chr15 36534735 36534769 -64845752 + L1MC3 LINE L1 6883 6920 -865 2217 98 3 0 chr15 36534769 36535076 -64845445 + AluSc SINE Alu 1 308 -1 271 173 30 179 chr15 36535076 36535177 -64845344 + L1MC3 LINE L1 6920 6991 -794 2254 110 0 0 chr15 36535177 36535508 -64845013 + AluSx SINE Alu 1 312 0 271 173 30 179 chr15 36535508 36535539 -64844982 + L1MC3 LINE L1 6991 7025 -760 1152 185 24 26 chr15 36535540 36535723 -64844798 + L1MC3 LINE L1 7187 7369 -416 1732 156 0 50 chr15 36535723 36535951 -64844570 + AluJb SINE Alu 1 211 -101 2008 108 7 0 chr15 36535951 36536250 -64844271 + AluSx SINE Alu 1 301 0 1732 156 0 50 chr15 36536250 36536341 -64844180 + AluJb SINE Alu 211 305 -7 1152 185 24 26 chr15 36536341 36536510 -64844011 + L1MC3 LINE L1 7369 7537 -248 2439 62 0 7 chr15 36536510 36536819 -64843702 - AluY SINE Alu -4 307 1 1152 185 24 26 chr15 36536819 36536852 -64843669 + L1MC3 LINE L1 7537 7774 -11 956 118 0 15 chr15 36536853 36536988 -64843533 - FLAM_C SINE Alu 0 133 1 205 288 96 0 chr15 36537393 36537466 -64843055 + L2 LINE L2 2454 2533 -781 186 43 0 0 chr15 36537738 36537761 -64842760 + (TTTCC)n Simple_repeat Simple_repeat 3 25 0 2020 159 0 0 chr15 36537769 36538078 -64842443 - AluSx SINE Alu -3 309 1 849 163 48 0 chr15 36538414 36538561 -64841960 + FRAM SINE Alu 1 154 -22 451 246 106 39 chr15 36538637 36538816 -64841705 - MIR SINE MIR -14 248 58 409 264 66 0 chr15 36539968 36540074 -64840447 + L2 LINE L2 3198 3310 -3 485 315 42 6 chr15 36540093 36540258 -64840263 + L2 LINE L2 3102 3272 0 1444 166 101 25 chr15 36542614 36542887 -64837634 + AluJo SINE Alu 1 295 -3 2190 121 0 0 chr15 36542887 36543200 -64837321 + AluSq SINE Alu 1 313 0 369 275 23 0 chr15 36543233 36543364 -64837157 + L1ME4a LINE L1 5690 5823 -1985 2163 97 3 3 chr15 36543372 36543670 -64836851 + AluSq SINE Alu 1 298 -15 292 279 16 62 chr15 36543989 36544118 -64836403 + MIR SINE MIR 140 262 0 886 133 13 25 chr15 36544300 36544313 -64836208 - BC200 scRNA scRNA -43 157 145 2261 67 40 0 chr15 36544313 36544612 -64835909 - AluY SINE Alu 0 311 1 886 133 13 25 chr15 36544612 36544756 -64835765 - BC200 scRNA scRNA -55 145 2 1850 156 7 7 chr15 36544828 36545130 -64835391 - AluJb SINE Alu -10 302 1 664 194 65 69 chr15 36547491 36547674 -64832847 + MIR SINE MIR 16 198 -64 2204 103 30 0 chr15 36547674 36547975 -64832546 + AluSg SINE Alu 1 310 0 2239 110 0 0 chr15 36547982 36548282 -64832239 + AluSx SINE Alu 1 300 -12 664 194 65 69 chr15 36548282 36548307 -64832214 + MIR SINE MIR 204 231 -31 410 292 8 17 chr15 36548333 36548453 -64832068 + MER5A DNA MER1_type 41 159 -30 2374 77 0 3 chr15 36548460 36548772 -64831749 - AluY SINE Alu 0 311 1 2331 82 0 0 chr15 36550668 36550962 -64829559 + AluY SINE Alu 3 296 -15 835 184 7 0 chr15 36551453 36551594 -64828927 + FRAM SINE Alu 1 140 -36 2268 92 7 0 chr15 36551595 36551901 -64828620 - AluSx SINE Alu -4 308 1 1631 173 23 17 chr15 36555014 36555315 -64825206 - AluJo SINE Alu -9 303 1 321 304 124 7 chr15 36555563 36555736 -64824785 + MIR SINE MIR 5 192 -65 185 374 35 9 chr15 36557043 36557158 -64823363 + MIR3 SINE MIR 37 154 -54 1579 178 14 11 chr15 36557509 36557795 -64822726 - AluSx SINE Alu -19 293 7 258 264 96 24 chr15 36558421 36558473 -64822048 + L1ME4a LINE L1 5894 5941 -180 2230 112 7 0 chr15 36558473 36558769 -64821752 + AluSx SINE Alu 1 298 -14 258 264 96 24 chr15 36558769 36558841 -64821680 + L1ME4a LINE L1 5941 6027 -94 227 95 48 0 chr15 36558851 36558893 -64821628 - Alu SINE Alu -6 293 250 441 227 9 150 chr15 36559947 36560167 -64820354 - AluSc SINE Alu -119 190 2 1555 193 13 46 chr15 36560268 36560574 -64819947 + AluJo SINE Alu 1 296 -16 2396 106 0 0 chr15 36560575 36560876 -64819645 + AluSx SINE Alu 1 301 -11 1204 137 0 16 chr15 36560876 36561039 -64819482 + AluSg/x SINE Alu 132 293 -17 2566 77 0 0 chr15 36561039 36561350 -64819171 + AluY SINE Alu 1 311 0 1204 137 0 16 chr15 36561350 36561368 -64819153 + AluSg/x SINE Alu 293 310 0 428 268 63 16 chr15 36562520 36562647 -64817874 - MIR3 SINE MIR -32 176 44 366 132 0 0 chr15 36562884 36562960 -64817561 + (CA)n Simple_repeat Simple_repeat 1 76 0 2021 149 0 0 chr15 36563080 36563382 -64817139 + AluSg SINE Alu 1 302 -8 727 172 14 21 chr15 36566015 36566160 -64814361 - AluSg SINE Alu -165 145 2 541 172 66 41 chr15 36566170 36566292 -64814229 - FLAM_A SINE Alu -8 125 1 242 207 52 0 chr15 36566294 36566352 -64814169 - L1ME LINE L1 -288 5876 5816 1076 148 33 6 chr15 36566363 36566546 -64813975 - AluJo SINE Alu -4 308 121 1406 152 108 9 chr15 36566548 36566585 -64813936 - L1ME LINE L1 -352 5812 5780 2124 132 0 10 chr15 36566585 36566896 -64813625 - AluSq SINE Alu -5 308 1 1406 152 108 9 chr15 36566896 36567173 -64813348 - L1ME LINE L1 -384 5780 5467 2288 114 7 0 chr15 36567173 36567481 -64813040 + AluSq SINE Alu 2 311 -2 2196 133 0 0 chr15 36567490 36567799 -64812722 + AluSx SINE Alu 1 309 -3 401 284 71 0 chr15 36567799 36567968 -64812553 - L1M4 LINE L1 -1560 4586 4406 976 119 63 0 chr15 36567986 36568129 -64812392 + AluSx SINE Alu 1 152 -161 321 309 36 14 chr15 36569017 36569156 -64811365 - MIR SINE MIR -59 203 62 557 216 8 15 chr15 36569310 36569444 -64811077 + AluSx SINE Alu 158 290 -22 23 0 0 0 chr15 36569444 36569467 -64811054 + AT_rich Low_complexity Low_complexity 1 23 0 1430 131 59 5 chr15 36569528 36569749 -64810772 - AluSg SINE Alu -77 233 1 810 172 0 0 chr15 36569800 36569916 -64810605 + FLAM_C SINE Alu 1 116 -27 210 333 0 0 chr15 36570037 36570091 -64810430 - L2 LINE L2 0 3272 3219 1927 91 121 11 chr15 36570312 36570577 -64809944 - AluSg SINE Alu -16 294 1 221 294 0 59 chr15 36570607 36570692 -64809829 - MIR3 SINE MIR -39 169 90 366 180 0 8 chr15 36570901 36570913 -64809608 - AluJ/FLAM SINE Alu -224 78 67 1611 128 0 25 chr15 36570913 36571155 -64809366 - AluJo SINE Alu -5 307 72 2457 92 0 0 chr15 36571155 36571459 -64809062 - AluSq SINE Alu -9 304 1 366 180 0 8 chr15 36571459 36571524 -64808997 - AluJ/FLAM SINE Alu -233 69 14 538 292 58 13 chr15 36571535 36571761 -64808760 - Charlie2 DNA MER1_type -2626 236 1 838 177 27 21 chr15 36572134 36572320 -64808201 + AluSq SINE Alu 115 301 -12 942 83 8 0 chr15 36573265 36573385 -64807136 + AluSg SINE Alu 1 121 -189 1580 143 8 8 chr15 36573506 36573757 -64806764 + AluSx SINE Alu 53 303 -9 295 230 20 50 chr15 36578229 36578329 -64802192 - MER5A DNA MER1_type -83 106 10 694 156 8 23 chr15 36580338 36580466 -64800055 - AluJb SINE Alu -29 283 158 1054 427 60 0 chr15 36580570 36580851 -64799670 + AluSc SINE Alu 1 298 -1 248 313 125 14 chr15 36581572 36581716 -64798805 - MLT1J LTR MaLR -52 459 300 2361 111 0 0 chr15 36581744 36582050 -64798471 + AluSx SINE Alu 1 306 -6 2038 172 14 19 chr15 36582372 36582739 -64797782 - MLT2B3 LTR ERVL -8 546 182 305 14 0 0 chr15 36582741 36582784 -64797737 - MLT2B3 LTR ERVL -354 43 1 243 0 0 0 chr15 36582925 36582952 -64797569 + (TG)n Simple_repeat Simple_repeat 1 27 0 289 217 114 66 chr15 36583286 36583452 -64797069 + MER69 DNA AcHobo 2119 2292 -234 547 134 41 0 chr15 36583452 36583549 -64796972 + L1MB8 LINE L1 5516 5616 -568 1111 222 31 88 chr15 36583555 36583974 -64796547 + MLT2D LTR ERVL 20 414 0 2153 168 50 75 chr15 36583976 36584063 -64796458 + L1MB8 LINE L1 5611 5699 -479 1905 158 3 7 chr15 36584063 36584367 -64796154 + AluSx SINE Alu 1 303 -9 2153 168 50 75 chr15 36584367 36584862 -64795659 + L1MB8 LINE L1 5699 6178 0 306 171 12 61 chr15 36584894 36584976 -64795545 + MER116 DNA Mariner 2 79 -1 2003 144 10 22 chr15 36585014 36585327 -64795194 - AluJb SINE Alu -3 309 1 414 136 38 98 chr15 36585341 36585473 -64795048 + MER69 DNA AcHobo 2396 2519 -7 30 27 0 0 chr15 36585800 36585837 -64794684 + AT_rich Low_complexity Low_complexity 1 37 0 863 113 8 16 chr15 36586024 36586148 -64794373 - AluSp SINE Alu -190 123 1 1000 78 0 28 chr15 36586151 36586292 -64794229 + MER57-int LTR ERV1 6401 6537 -1000 2280 87 10 0 chr15 36586293 36586592 -64793929 + AluY SINE Alu 1 302 -9 2435 61 14 0 chr15 36586597 36586890 -64793631 + AluSp SINE Alu 2 298 -15 233 267 53 13 chr15 36587031 36587106 -64793415 - MER5A DNA MER1_type -108 81 4 619 250 30 6 chr15 36587512 36587721 -64792800 + L1ME4a LINE L1 5682 5896 -225 1587 176 30 44 chr15 36587950 36588245 -64792276 - AluJb SINE Alu -21 291 1 623 214 0 8 chr15 36588279 36588410 -64792111 + FLAM_A SINE Alu 1 130 -3 1661 165 3 53 chr15 36588565 36588868 -64791653 - AluJb SINE Alu -21 291 4 229 129 32 16 chr15 36588877 36588939 -64791582 + L1ME4a LINE L1 6051 6113 -8 709 186 0 0 chr15 36589025 36589143 -64791378 - FLAM_C SINE Alu -15 128 11 2040 123 3 7 chr15 36589205 36589497 -64791024 + AluSx SINE Alu 1 291 -21 631 229 7 0 chr15 36590839 36590979 -64789542 + AluY SINE Alu 153 293 -18 255 248 166 25 chr15 36590982 36591139 -64789382 + MER20B DNA MER1_type 530 708 -75 244 292 56 0 chr15 36591345 36591434 -64789087 - L1MC4a LINE L1 -1636 6172 6079 329 296 90 32 chr15 36592339 36592419 -64788102 - L2 LINE L2 0 3313 3239 2210 96 17 20 chr15 36592419 36592720 -64787801 + AluSx SINE Alu 1 300 -12 329 296 90 32 chr15 36592720 36592828 -64787693 - L2 LINE L2 -74 3239 3114 592 245 7 0 chr15 36592835 36592974 -64787547 + FLAM_C SINE Alu 2 141 -2 476 323 38 5 chr15 36593016 36593202 -64787319 - MIR SINE MIR -51 211 20 313 248 166 21 chr15 36593224 36593369 -64787152 - MIR3 SINE MIR -24 184 19 417 250 86 89 chr15 36593579 36593903 -64786618 - L2 LINE L2 -5 3267 2945 3472 170 51 72 chr15 36594832 36596297 -64784224 - pTR5 LTR ERV1 0 2606 1524 485 233 95 0 chr15 36596793 36596909 -64783612 + MER94 DNA DNA 8 134 0 2254 98 3 7 chr15 36598076 36598373 -64782148 - AluSx SINE Alu -10 302 7 464 165 22 0 chr15 36598373 36598464 -64782057 + Charlie1 DNA MER1_type 2649 2741 -20 375 309 125 38 chr15 36598534 36599117 -64781404 + L2 LINE L2 1814 2447 -867 372 325 118 14 chr15 36599504 36599716 -64780805 + L2 LINE L2 3036 3269 -3 29 47 0 0 chr15 36599935 36599978 -64780543 + AT_rich Low_complexity Low_complexity 1 43 0 1058 108 0 22 chr15 36600356 36600495 -64780026 - AluJo SINE Alu -176 136 1 219 261 81 4 chr15 36601042 36601136 -64779385 + MER91B DNA MER1_type 1 103 -37 204 125 0 0 chr15 36601402 36601434 -64779087 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 1980 108 76 4 chr15 36602658 36602935 -64777586 + AluSx SINE Alu 1 297 -15 2314 121 0 3 chr15 36602946 36603275 -64777246 + AluSx SINE Alu 1 312 0 301 287 233 0 chr15 36603316 36603445 -64777076 + MER5A DNA MER1_type 7 165 -24 23 78 0 0 chr15 36604646 36604697 -64775824 + GC_rich Low_complexity Low_complexity 1 51 0 300 267 97 62 chr15 36606195 36606371 -64774150 + L1ME LINE L1 5503 5684 -437 345 320 10 30 chr15 36606496 36606824 -64773697 + CT-rich Low_complexity Low_complexity 1 321 0 23 33 0 0 chr15 36607099 36607129 -64773392 + AT_rich Low_complexity Low_complexity 1 30 0 2110 138 3 10 chr15 36607129 36607427 -64773094 + AluJb SINE Alu 2 297 -15 409 275 123 43 chr15 36607701 36607912 -64772609 - MIR SINE MIR -12 250 23 205 370 7 34 chr15 36609910 36610056 -64770465 - MIR3 SINE MIR -25 183 42 862 88 95 54 chr15 36610167 36610314 -64770207 + AluSq SINE Alu 1 153 -160 531 165 0 0 chr15 36610314 36610399 -64770122 + AluSg/x SINE Alu 214 298 -11 312 196 0 0 chr15 36610400 36610451 -64770070 + L1MC4 LINE L1 6652 6702 -1340 * 317 252 113 53 chr15 36610428 36610579 -64769942 - L1MCa LINE L1 -4371 2055 1896 2236 93 0 34 chr15 36610812 36611134 -64769387 + AluSx SINE Alu 2 312 0 532 315 99 9 chr15 36611323 36611536 -64768985 + MIR SINE MIR 31 262 0 1710 148 14 3 chr15 36611752 36612035 -64768486 - AluJb SINE Alu -26 286 1 976 171 0 6 chr15 36612038 36612202 -64768319 - AluJo/FRAM SINE Alu -16 296 134 1899 143 3 7 chr15 36612202 36612503 -64768018 - AluJb SINE Alu -12 300 1 3896 161 33 1 chr15 36614216 36614905 -64765616 + MER50 LTR ERV1 1 711 -23 23 97 0 0 chr15 36615664 36615736 -64764785 + GC_rich Low_complexity Low_complexity 1 72 0 2439 63 0 0 chr15 36617922 36618225 -64762296 - AluY SINE Alu -8 303 1 186 71 0 0 chr15 36618740 36618768 -64761753 + (A)n Simple_repeat Simple_repeat 1 28 0 351 319 112 27 chr15 36621709 36621897 -64758624 + MIR SINE MIR 46 249 -13 209 59 59 0 chr15 36623300 36623334 -64757187 + CT-rich Low_complexity Low_complexity 4 39 0 1840 141 47 0 chr15 36623339 36623637 -64756884 - AluSx SINE Alu 0 312 1 1468 106 51 0 chr15 36623647 36623864 -64756657 - AluY SINE Alu 0 311 84 231 315 11 0 chr15 36624036 36624128 -64756393 - L2 LINE L2 -214 3058 2966 287 25 25 0 chr15 36624389 36624429 -64756092 + (CA)n Simple_repeat Simple_repeat 2 42 0 364 209 11 22 chr15 36632980 36633071 -64747450 + MIR SINE MIR 68 157 -105 1903 119 3 14 chr15 36633076 36633406 -64747115 + AluSx SINE Alu 1 327 0 599 285 12 6 chr15 36635302 36635467 -64745054 + L3b LINE CR1 1220 1385 -198 1908 106 0 0 chr15 36635869 36636133 -64744388 + AluSq SINE Alu 48 311 -2 1837 140 3 29 chr15 36636147 36636454 -64744067 + AluSx SINE Alu 3 301 -11 2171 94 20 0 chr15 36637077 36637374 -64743147 + AluSx SINE Alu 4 306 -6 335 272 29 10 chr15 36638171 36638274 -64742247 - L3 LINE CR1 -117 1460 1356 1728 176 0 3 chr15 36640382 36640678 -64739843 - AluJb SINE Alu -15 297 3 320 206 21 62 chr15 36641718 36641815 -64738706 - MER5B DNA MER1_type -85 93 1 362 151 0 17 chr15 36642687 36642753 -64737768 + FLAM SINE Alu 61 117 -16 1810 150 3 19 chr15 36642777 36643090 -64737431 + AluSg SINE Alu 3 310 0 529 158 11 0 chr15 36643129 36643224 -64737297 - LTR54B LTR ERV1 -399 99 4 1082 187 13 24 chr15 36643224 36643510 -64737011 - MER57-int LTR ERV1 -655 6882 6646 23 0 0 0 chr15 36643947 36643970 -64736551 + AT_rich Low_complexity Low_complexity 1 23 0 228 210 12 68 chr15 36644077 36644313 -64736208 + (ATAAG)n Simple_repeat Simple_repeat 1 222 0 25 51 0 0 chr15 36644519 36644558 -64735963 + AT_rich Low_complexity Low_complexity 1 39 0 219 186 119 17 chr15 36645039 36645098 -64735423 + MIR SINE MIR 55 119 -143 46 16 0 16 chr15 36645760 36645779 -64734742 + AT_rich Low_complexity Low_complexity 1 19 -44 1867 98 0 35 chr15 36645779 36646064 -64734457 + AluSq SINE Alu 33 307 -6 46 16 0 16 chr15 36646064 36646108 -64734413 + AT_rich Low_complexity Low_complexity 19 63 0 836 141 0 22 chr15 36646167 36646302 -64734219 + FLAM_C SINE Alu 1 132 -1 595 274 40 45 chr15 36647647 36647870 -64732651 - MIR SINE MIR 0 262 41 879 128 13 159 chr15 36648763 36648811 -64731710 + MER51B-int LTR ERV1 7623 7676 -140 2161 101 0 0 chr15 36648811 36649099 -64731422 + AluSg SINE Alu 6 293 -17 879 128 13 159 chr15 36649099 36649276 -64731245 + MER51B-int LTR ERV1 7676 7815 -1 1709 120 31 4 chr15 36649278 36649536 -64730985 + MER51B LTR ERV1 1 265 -112 1936 148 7 0 chr15 36649536 36649841 -64730680 - AluSx SINE Alu 0 312 6 2329 87 0 3 chr15 36649845 36650154 -64730367 - AluY SINE Alu -3 308 1 966 211 0 0 chr15 36650154 36650329 -64730192 - AluSg/x SINE Alu -16 296 122 389 200 29 0 chr15 36650329 36650399 -64730122 - AluJ/FLAM SINE Alu -230 72 1 1874 113 0 39 chr15 36651614 36651925 -64728596 - AluY SINE Alu -12 299 1 809 148 39 8 chr15 36652229 36652357 -64728164 + FRAM SINE Alu 34 165 -11 2135 111 13 0 chr15 36652631 36652937 -64727584 - AluSg SINE Alu 0 310 1 1488 21 0 2 chr15 36653577 36653782 -64726739 + (CTGTG)n Simple_repeat Simple_repeat 1 385 0 874 193 14 11 chr15 36654039 36654312 -64726209 + CT-rich Low_complexity Low_complexity 1 273 0 2112 114 10 0 chr15 36654728 36655027 -64725494 + AluSg SINE Alu 1 302 -8 1999 122 7 3 chr15 36655036 36655332 -64725189 + AluSx SINE Alu 1 297 -15 1699 99 13 0 chr15 36656832 36657065 -64723456 - AluSq SINE Alu -19 294 59 2125 119 0 0 chr15 36657263 36657558 -64722963 + AluSx SINE Alu 2 296 -16 1687 191 0 16 chr15 36659114 36659428 -64721093 - AluJb SINE Alu -3 309 1 880 117 45 39 chr15 36660387 36660541 -64719980 - AluSp SINE Alu -122 191 37 2487 119 27 9 chr15 36660541 36661073 -64719448 - MER61-int LTR ERV1 -1203 6334 5747 1998 111 0 77 chr15 36661074 36661399 -64719122 + AluSx SINE Alu 1 300 -12 319 103 184 92 chr15 36661399 36661486 -64719035 - MER61-int LTR ERV1 -2194 5343 5249 * 2115 107 30 9 chr15 36661485 36661875 -64718646 - MER61-int LTR ERV1 -1626 4320 2211 1973 162 0 0 chr15 36661943 36662240 -64718281 - AluSx SINE Alu -13 299 3 2087 139 3 0 chr15 36662252 36662546 -64717975 - AluSx SINE Alu -17 295 1 1354 181 8 39 chr15 36662856 36663115 -64717406 - AluJo SINE Alu -25 287 37 261 252 96 7 chr15 36663762 36663897 -64716624 + MER112 DNA MER1_type 29 175 -85 333 0 0 0 chr15 36663939 36663976 -64716545 + (TG)n Simple_repeat Simple_repeat 2 38 0 2117 90 23 30 chr15 36664006 36664307 -64716214 + AluSx SINE Alu 2 300 -12 2381 89 0 3 chr15 36664639 36664943 -64715578 + AluSg SINE Alu 1 303 -7 2077 145 0 3 chr15 36665662 36665965 -64714556 - AluJb SINE Alu -10 302 1 346 214 48 12 chr15 36665982 36666066 -64714455 - L2 LINE L2 -3 3310 3224 2062 100 10 17 chr15 36666336 36666627 -64713894 + AluSc SINE Alu 1 289 -20 180 0 0 0 chr15 36666903 36666923 -64713598 + (TC)n Simple_repeat Simple_repeat 1 20 0 221 354 70 50 chr15 36667394 36667710 -64712811 + L2 LINE L2 2716 3051 -221 1921 121 0 0 chr15 36667804 36668061 -64712460 + AluSx SINE Alu 1 257 -55 213 94 0 0 chr15 36668091 36668123 -64712398 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1166 256 66 49 chr15 36668123 36668295 -64712226 - L2 LINE L2 -13 3300 3132 2242 104 0 10 chr15 36668295 36668594 -64711927 + AluSg SINE Alu 1 296 -14 1166 256 66 49 chr15 36668594 36669090 -64711431 - L2 LINE L2 -181 3132 2625 212 233 94 138 chr15 36669090 36669178 -64711343 - L2 LINE L2 -989 2325 2246 2267 118 0 3 chr15 36669178 36669491 -64711030 - AluSx SINE Alu 0 312 1 212 233 94 138 chr15 36669491 36669561 -64710960 - L2 LINE L2 -1068 2246 2174 1692 187 0 7 chr15 36669872 36670172 -64710349 + AluJo SINE Alu 1 298 -14 1473 161 23 23 chr15 36670891 36671190 -64709331 + AluSc SINE Alu 1 299 -10 254 211 10 93 chr15 36671520 36671714 -64708807 + T-rich Low_complexity Low_complexity 2 179 0 415 267 8 17 chr15 36671752 36671872 -64708649 + Alu SINE Alu 181 299 -11 937 219 0 0 chr15 36673120 36673284 -64707237 + FRAM SINE Alu 1 164 -2 359 154 0 0 chr15 36673906 36673958 -64706563 + AluSq SINE Alu 140 191 -112 1581 152 10 54 chr15 36674456 36674615 -64705906 - AluSq SINE Alu -21 292 150 1468 155 7 37 chr15 36674615 36674911 -64705610 - AluSx SINE Alu -15 297 11 1581 152 10 54 chr15 36674911 36675048 -64705473 - AluSq SINE Alu -163 150 9 1501 163 0 4 chr15 36675182 36675409 -64705112 - AluSx SINE Alu -84 228 3 1006 132 0 0 chr15 36675410 36675546 -64704975 - AluSq/x SINE Alu -176 136 1 838 171 0 0 chr15 36675548 36675677 -64704844 - AluJb SINE Alu -20 292 164 227 318 0 0 chr15 36675694 36675757 -64704764 + MIR SINE MIR 79 141 -121 295 167 0 0 chr15 36677211 36677259 -64703262 + Alu SINE Alu 1 48 -253 2184 108 7 0 chr15 36677668 36677965 -64702556 + AluSg SINE Alu 1 299 -11 201 384 8 0 chr15 36678091 36678216 -64702305 + L2 LINE L2 2934 3059 -213 1719 155 0 52 chr15 36678346 36678490 -64702031 + AluJo SINE Alu 1 122 -190 2323 92 0 19 chr15 36678490 36678805 -64701716 + AluSc SINE Alu 1 309 0 1719 155 0 52 chr15 36678805 36678970 -64701551 + AluJo SINE Alu 122 294 -18 1892 175 0 0 chr15 36679214 36679517 -64701004 + AluJo SINE Alu 7 309 -3 959 198 16 62 chr15 36679560 36679802 -64700719 + AluJb SINE Alu 1 231 -81 21 0 0 0 chr15 36679912 36679933 -64700588 + AT_rich Low_complexity Low_complexity 1 21 0 2120 73 0 8 chr15 36679971 36680232 -64700289 + AluSg SINE Alu 30 288 -22 2168 113 13 13 chr15 36680243 36680552 -64699969 + AluSp SINE Alu 1 309 -4 2037 131 0 0 chr15 36680739 36681022 -64699499 + AluSx SINE Alu 28 310 -2 784 162 0 22 chr15 36681232 36681368 -64699153 + FLAM_C SINE Alu 1 133 0 2210 133 0 0 chr15 36681454 36681756 -64698765 + AluSx SINE Alu 1 302 -10 1324 140 144 11 chr15 36681930 36682220 -64698301 - MSTA LTR MaLR -91 335 1 248 298 36 12 chr15 36682222 36682306 -64698215 - LTR67 LTR ERVL -44 513 428 207 0 0 0 chr15 36682410 36682433 -64698088 + (TA)n Simple_repeat Simple_repeat 2 24 0 206 269 60 0 chr15 36683440 36683507 -64697014 + MIR SINE MIR 191 261 -1 2180 116 0 0 chr15 36683722 36684015 -64696506 + AluSc SINE Alu 1 293 -16 2178 110 10 0 chr15 36684099 36684399 -64696122 - AluSp SINE Alu -10 303 1 2094 125 0 10 chr15 36684482 36684787 -64695734 + AluSx SINE Alu 1 302 -10 350 320 26 0 chr15 36684806 36684959 -64695562 + L1M4 LINE L1 3289 3445 -2701 2291 116 0 3 chr15 36684967 36685269 -64695252 + AluSx SINE Alu 1 301 -11 2140 118 23 3 chr15 36685312 36685616 -64694905 + AluSx SINE Alu 1 310 -2 1612 181 14 10 chr15 36685702 36685990 -64694531 + AluJo SINE Alu 1 289 -23 899 114 0 0 chr15 36686000 36686114 -64694407 + AluSg/x SINE Alu 173 286 -26 34 42 0 0 chr15 36686114 36686162 -64694359 + AT_rich Low_complexity Low_complexity 1 48 0 2550 197 30 31 chr15 36686438 36686824 -64693697 + L1MB7 LINE L1 5573 5959 -225 2157 101 7 3 chr15 36686824 36687120 -64693401 + AluSx SINE Alu 1 297 -15 2550 197 30 31 chr15 36687120 36687336 -64693185 + L1MB7 LINE L1 5959 6174 -10 2374 96 3 0 chr15 36687453 36687754 -64692767 - AluSx SINE Alu -10 302 1 2300 98 0 10 chr15 36687756 36688061 -64692460 - AluSq SINE Alu -1 312 11 2052 98 79 0 chr15 36688349 36688626 -64691895 - AluSc SINE Alu -10 299 1 1608 184 3 31 chr15 36688766 36689086 -64691435 - AluJo SINE Alu -1 311 1 2161 91 0 42 chr15 36689181 36689489 -64691032 + AluY SINE Alu 1 295 -16 2001 115 28 7 chr15 36690009 36690320 -64690201 - AluSx SINE Alu 0 312 1 2412 71 0 40 chr15 36690387 36690711 -64689810 - AluY SINE Alu 0 311 1 29 0 0 0 chr15 36690781 36690810 -64689711 + AT_rich Low_complexity Low_complexity 1 29 0 402 218 11 0 chr15 36690810 36690897 -64689624 - AluJb SINE Alu -205 107 20 1277 110 0 0 chr15 36691149 36691313 -64689208 - AluSg/x SINE Alu -19 293 130 1842 188 0 6 chr15 36691317 36691631 -64688890 - 7SLRNA srpRNA srpRNA -8 312 1 2046 127 7 7 chr15 36691658 36691958 -64688563 - AluSc SINE Alu -7 302 3 1852 154 6 41 chr15 36691965 36692153 -64688368 - AluJo SINE Alu 0 312 138 2389 45 41 3 chr15 36692153 36692444 -64688077 - AluY SINE Alu -9 302 1 1852 154 6 41 chr15 36692444 36692573 -64687948 - AluJo SINE Alu -174 138 6 539 211 9 0 chr15 36692707 36692816 -64687705 + FLAM_A SINE Alu 21 130 -12 1793 159 3 23 chr15 36692818 36693119 -64687402 + AluJo SINE Alu 1 295 -17 29 0 0 0 chr15 36693166 36693195 -64687326 + AT_rich Low_complexity Low_complexity 1 29 0 2300 148 63 63 chr15 36693200 36693360 -64687161 + MLT1D LTR MaLR 1 160 -345 2492 87 0 0 chr15 36693360 36693671 -64686850 - AluY SINE Alu 0 311 1 2300 148 63 63 chr15 36693671 36694015 -64686506 + MLT1D LTR MaLR 159 505 0 466 243 0 0 chr15 36694500 36694603 -64685918 + FLAM_A SINE Alu 35 137 -5 23 0 0 0 chr15 36695024 36695047 -64685474 + AT_rich Low_complexity Low_complexity 1 23 0 1068 128 7 0 chr15 36695505 36695673 -64684848 - AluSg/x SINE Alu 0 300 132 2396 96 0 0 chr15 36695673 36695975 -64684546 - AluSg SINE Alu -8 302 1 1393 135 0 0 chr15 36695978 36696178 -64684343 - MER51-int LTR ERV1 -150 7666 7467 2231 105 3 6 chr15 36696195 36696508 -64684013 + AluSx SINE Alu 1 312 0 551 158 11 0 chr15 36696547 36696642 -64683879 - LTR54B LTR ERV1 -399 99 4 6414 112 78 43 chr15 36696642 36696971 -64683550 - MER51-int LTR ERV1 -655 6882 6566 2202 123 0 3 chr15 36696971 36697272 -64683249 - AluSg SINE Alu -10 300 1 6414 112 78 43 chr15 36697272 36697417 -64683104 - MER51-int LTR ERV1 -971 6566 6427 1609 109 60 84 chr15 36697417 36697563 -64682958 + AluSp SINE Alu 1 138 -175 2268 80 17 0 chr15 36697563 36697687 -64682834 + AluY SINE Alu 1 121 -190 474 101 0 0 chr15 36697687 36697756 -64682765 + (CA)n Simple_repeat Simple_repeat 2 70 0 2268 80 17 0 chr15 36697756 36697920 -64682601 + AluY SINE Alu 121 294 -17 1609 109 60 84 chr15 36697920 36698057 -64682464 + AluSp SINE Alu 138 277 -36 2101 107 3 17 chr15 36698058 36698356 -64682165 + AluSp SINE Alu 1 294 -19 6414 112 78 43 chr15 36698356 36698444 -64682077 - MER51-int LTR ERV1 -1110 6427 6344 2254 73 0 0 chr15 36698444 36698718 -64681803 - AluSg SINE Alu 0 310 37 6414 112 78 43 chr15 36698718 36699221 -64681300 - MER51-int LTR ERV1 -1193 6344 5776 1913 112 6 78 chr15 36699249 36699570 -64680951 + AluSx SINE Alu 3 300 -12 319 103 184 92 chr15 36699570 36699657 -64680864 - MER51-int LTR ERV1 -2194 5343 5249 * 2052 98 5 6 chr15 36699656 36700047 -64680474 - MER51-int LTR ERV1 -2572 2645 2211 304 244 0 0 chr15 36700174 36700260 -64680261 + C-rich Low_complexity Low_complexity 1 86 0 2034 136 10 0 chr15 36700656 36700964 -64679557 + AluSx SINE Alu 1 311 -1 2694 174 56 14 chr15 36700973 36701489 -64679032 + L1MB5 LINE L1 5585 6122 -52 2209 90 52 0 chr15 36701489 36701778 -64678743 - AluSp SINE Alu -9 304 1 956 198 24 0 chr15 36701790 36701957 -64678564 - AluJo SINE Alu -141 171 1 283 151 0 0 chr15 36701964 36702017 -64678504 + L1MB4 LINE L1 6128 6180 0 1468 184 16 20 chr15 36702055 36702360 -64678161 + AluJo SINE Alu 9 312 0 2339 99 3 0 chr15 36702571 36702873 -64677648 - AluSg SINE Alu -7 303 1 735 177 8 0 chr15 36703640 36703770 -64676751 + AluJo/FLAM SINE Alu 2 132 -180 2064 124 3 23 chr15 36703772 36704071 -64676450 + AluSp SINE Alu 1 293 -20 2105 133 0 7 chr15 36704075 36704375 -64676146 + AluSx SINE Alu 1 298 -14 1678 109 0 133 chr15 36704631 36704969 -64675552 - AluSg SINE Alu -17 293 1 223 222 56 139 chr15 36705531 36705675 -64674846 - MIR SINE MIR -73 189 58 1929 157 10 0 chr15 36706388 36706682 -64673839 + AluJo SINE Alu 1 297 -15 1153 48 0 0 chr15 36706747 36706892 -64673629 - L1PA5 LINE L1 -3 6151 6007 2333 101 3 22 chr15 36706942 36707259 -64673262 - AluSp SINE Alu -2 311 1 201 154 0 0 chr15 36707566 36707605 -64672916 + A-rich Low_complexity Low_complexity 1 39 0 1521 71 0 0 chr15 36707937 36708120 -64672401 + AluSc SINE Alu 1 183 -126 189 0 0 0 chr15 36708160 36708181 -64672340 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 2380 75 3 0 chr15 36708280 36708575 -64671946 - AluY SINE Alu -13 298 3 1804 149 31 3 chr15 36710247 36710535 -64669986 - AluSx SINE Alu -15 297 2 1512 137 6 128 chr15 36710770 36710972 -64669549 - AluSx SINE Alu -1 301 157 2170 107 0 0 chr15 36710972 36711253 -64669268 - AluY SINE Alu -30 281 1 1512 137 6 128 chr15 36711253 36711393 -64669128 - AluSx SINE Alu -145 157 1 1901 162 0 0 chr15 36711522 36711806 -64668715 - AluSx SINE Alu -26 286 3 2212 112 3 0 chr15 36711818 36712113 -64668408 - AluSq SINE Alu -17 296 1 2215 92 13 29 chr15 36712123 36712437 -64668084 - AluSp SINE Alu -4 309 1 2091 143 55 10 chr15 36712443 36712843 -64667678 - MER41-int LTR ERV1 -2344 4652 2820 * 4885 105 133 1 chr15 36712815 36713641 -64666880 - MER41-int LTR ERV1 -4489 3327 2393 4940 98 6 20 chr15 36713642 36714226 -64666295 + LTR8 LTR ERV1 1 575 -116 2294 91 3 3 chr15 36714226 36714523 -64665998 + AluSg SINE Alu 5 301 -9 4940 98 6 20 chr15 36714523 36714631 -64665890 + LTR8 LTR ERV1 575 683 -8 4478 138 50 31 chr15 36714633 36715980 -64664541 + pTR5 LTR ERV1 741 2437 -1 700 106 139 0 chr15 36715992 36716143 -64664378 - MER41-int LTR ERV1 -5421 2395 2224 * 728 95 135 7 chr15 36716127 36716275 -64664246 - MER41-int LTR ERV1 -5697 2119 1953 1137 106 0 0 chr15 36716297 36716438 -64664083 - AluSg/x SINE Alu -27 285 145 989 186 14 59 chr15 36716552 36716773 -64663748 - AluJo SINE Alu -15 297 87 1491 140 132 4 chr15 36716929 36717179 -64663342 - AluJb SINE Alu -30 282 1 2209 102 3 3 chr15 36717280 36717574 -64662947 + AluSx SINE Alu 1 294 -18 1507 132 52 0 chr15 36717576 36717826 -64662695 + AluSg SINE Alu 1 263 -47 212 233 94 138 chr15 36718359 36718429 -64662092 + L2 LINE L2 2174 2246 -1068 2267 118 0 3 chr15 36718429 36718742 -64661779 + AluSx SINE Alu 1 312 0 212 233 94 138 chr15 36718742 36718830 -64661691 + L2 LINE L2 2246 2325 -989 1166 256 66 49 chr15 36718830 36719326 -64661195 + L2 LINE L2 2625 3132 -181 2242 104 0 10 chr15 36719326 36719625 -64660896 - AluSg SINE Alu -14 296 1 1166 256 66 49 chr15 36719625 36719797 -64660724 + L2 LINE L2 3132 3300 -13 213 94 0 0 chr15 36719797 36719829 -64660692 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 1816 140 0 0 chr15 36719859 36720116 -64660405 - AluSx SINE Alu -55 257 1 221 354 70 50 chr15 36720210 36720526 -64659995 - L2 LINE L2 -221 3051 2716 180 0 0 0 chr15 36720997 36721017 -64659504 + (GA)n Simple_repeat Simple_repeat 1 20 0 2062 100 10 17 chr15 36721293 36721584 -64658937 - AluSc SINE Alu -20 289 1 333 226 48 12 chr15 36721854 36721938 -64658583 + L2 LINE L2 3224 3310 -3 2077 145 0 3 chr15 36721955 36722258 -64658263 + AluJb SINE Alu 1 302 -10 2381 89 0 3 chr15 36722977 36723281 -64657240 - AluSg SINE Alu -7 303 1 2117 90 23 30 chr15 36723613 36723914 -64656607 - AluSx SINE Alu -12 300 2 333 0 0 0 chr15 36723944 36723981 -64656540 + (CA)n Simple_repeat Simple_repeat 2 38 0 261 252 96 7 chr15 36724023 36724158 -64656363 - MER112 DNA MER1_type -85 175 29 1372 178 8 39 chr15 36724805 36725064 -64655457 + AluJo SINE Alu 37 287 -25 1960 143 3 37 chr15 36725374 36725695 -64654826 + AluJb SINE Alu 1 310 -2 229 196 20 0 chr15 36726348 36726399 -64654122 + L2 LINE L2 3220 3271 -1 376 226 61 9 chr15 36727575 36727690 -64652831 + L1ME4a LINE L1 5582 5702 -419 2341 84 0 50 chr15 36727783 36728105 -64652416 + AluY SINE Alu 1 306 -5 446 216 221 11 chr15 36728107 36728279 -64652242 + L1ME4a LINE L1 5823 6040 -81 2463 84 3 0 chr15 36728279 36728588 -64651933 - AluSx SINE Alu 0 312 3 446 216 221 11 chr15 36728588 36728605 -64651916 + L1ME4a LINE L1 6040 6052 -69 2040 152 7 0 chr15 36729873 36730182 -64650339 + AluSx SINE Alu 1 311 -1 180 0 0 0 chr15 36730920 36730940 -64649581 + (A)n Simple_repeat Simple_repeat 1 20 0 2232 119 3 0 chr15 36732132 36732443 -64648078 - AluSx SINE Alu 0 312 1 1838 159 14 3 chr15 36732854 36733150 -64647371 + AluJb SINE Alu 1 299 -13 1895 129 102 3 chr15 36733150 36733183 -64647338 + L1MA9 LINE L1 5756 5784 -528 285 29 0 0 chr15 36733183 36733217 -64647304 + (CA)n Simple_repeat Simple_repeat 2 35 0 1895 129 102 3 chr15 36733217 36733525 -64646996 + L1MA9 LINE L1 5784 6131 -181 377 138 0 0 chr15 36733527 36733592 -64646929 + L1MA9 LINE L1 6242 6306 -6 312 288 150 7 chr15 36733697 36733795 -64646726 + MER5A DNA MER1_type 14 97 -92 2053 138 7 0 chr15 36733795 36734093 -64646428 - AluSx SINE Alu -11 301 2 312 288 150 7 chr15 36734093 36734147 -64646374 + MER5A DNA MER1_type 97 188 -1 3112 14 0 3 chr15 36734194 36734548 -64645973 - L1PA3 LINE L1 0 6155 5803 1706 168 16 40 chr15 36734558 36734862 -64645659 - AluJo SINE Alu -15 297 1 303 245 64 11 chr15 36735165 36735259 -64645262 - MIR SINE MIR -14 248 150 27 29 0 0 chr15 36735359 36735393 -64645128 + AT_rich Low_complexity Low_complexity 1 34 0 385 226 218 24 chr15 36735410 36735534 -64644987 - MIR SINE MIR -99 163 16 379 164 0 0 chr15 36736559 36736620 -64643901 - MER50 LTR ERV1 -177 557 497 2218 99 17 0 chr15 36737249 36737542 -64642979 + AluSx SINE Alu 1 298 -14 306 67 0 0 chr15 36738038 36738083 -64642438 + (CAA)n Simple_repeat Simple_repeat 2 46 0 816 229 11 6 chr15 36740182 36740357 -64640164 + MER5B DNA MER1_type 2 177 -1 2048 138 6 34 chr15 36740618 36740938 -64639583 + AluSx SINE Alu 1 311 -1 1592 173 11 18 chr15 36741658 36741930 -64638591 - AluJb SINE Alu -13 299 30 21 0 0 0 chr15 36743874 36743895 -64636626 + AT_rich Low_complexity Low_complexity 1 21 0 2500 62 0 0 chr15 36744904 36745195 -64635326 + AluY SINE Alu 1 291 -20 602 164 224 0 chr15 36747015 36747131 -64633390 + MER46A DNA MER2_type 1 142 -94 185 276 81 11 chr15 36747411 36747498 -64633023 + MER5A DNA MER1_type 97 189 0 1980 138 10 16 chr15 36747785 36748097 -64632424 + AluSx SINE Alu 1 310 -2 2376 101 0 0 chr15 36748460 36748757 -64631764 + AluSx SINE Alu 7 303 -9 32 26 0 0 chr15 36748838 36748877 -64631644 + AT_rich Low_complexity Low_complexity 1 39 0 2071 143 0 0 chr15 36750401 36750701 -64629820 + AluSx SINE Alu 1 300 -12 1948 162 0 16 chr15 36751239 36751553 -64628968 + AluJb SINE Alu 1 309 -3 2226 119 0 0 chr15 36753109 36753404 -64627117 - AluSx SINE Alu -16 296 2 1776 99 13 0 chr15 36753602 36753835 -64626686 + AluSq SINE Alu 59 294 -19 2093 122 7 3 chr15 36755336 36755632 -64624889 - AluSx SINE Alu -15 297 1 2215 112 10 0 chr15 36755644 36755940 -64624581 - AluSg SINE Alu -11 299 1 186 258 52 0 chr15 36756356 36756453 -64624068 + GA-rich Low_complexity Low_complexity 2 103 0 * 935 118 11 22 chr15 36756450 36756628 -64623893 + (GGGA)n Simple_repeat Simple_repeat 2 177 0 1372 22 0 13 chr15 36756884 36757107 -64623414 + (CACAG)n Simple_repeat Simple_repeat 1 220 0 2230 108 13 0 chr15 36757747 36758053 -64622468 + AluSg SINE Alu 1 310 0 801 148 39 8 chr15 36758327 36758455 -64622066 - FRAM SINE Alu -11 165 34 2192 77 0 42 chr15 36758759 36759071 -64621450 + AluY SINE Alu 1 299 -12 386 200 29 0 chr15 36760286 36760356 -64620165 + AluJ/FLAM SINE Alu 1 72 -230 999 211 0 0 chr15 36760356 36760531 -64619990 + AluSg/x SINE Alu 122 296 -16 2439 87 0 3 chr15 36760531 36760840 -64619681 + AluY SINE Alu 1 308 -3 2011 135 0 13 chr15 36760844 36760962 -64619559 + AluSx SINE Alu 6 124 -188 216 0 0 0 chr15 36760962 36760986 -64619535 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2011 135 0 13 chr15 36760986 36761178 -64619343 + AluSx SINE Alu 124 312 0 520 220 9 18 chr15 36761184 36761293 -64619228 + MLT1F LTR MaLR 418 525 -17 1902 121 0 69 chr15 36761792 36762121 -64618400 + AluSx SINE Alu 1 308 0 1931 140 18 0 chr15 36762223 36762508 -64618013 + AluSx SINE Alu 1 290 -22 22 0 0 0 chr15 36762508 36762530 -64617991 + AT_rich Low_complexity Low_complexity 1 22 0 2237 110 0 0 chr15 36762657 36762948 -64617573 + AluSx SINE Alu 1 291 -21 2149 113 20 3 chr15 36763003 36763305 -64617216 - AluSx SINE Alu -4 308 2 722 167 8 25 chr15 36764155 36764275 -64616246 - FLAM_C SINE Alu -24 119 2 736 213 0 14 chr15 36765058 36765199 -64615322 + FLAM_C SINE Alu 1 139 -4 795 266 73 15 chr15 36765211 36765485 -64615036 + L1ME LINE L1 4625 4914 -1232 595 171 29 0 chr15 36765588 36765693 -64614828 + FLAM_C SINE Alu 2 109 -34 403 169 0 56 chr15 36765716 36765787 -64614734 + AluJ/FRAM SINE Alu 226 292 -20 586 260 64 4 chr15 36765846 36766081 -64614440 + L1ME LINE L1 5265 5513 -651 1568 147 0 95 chr15 36766081 36766387 -64614134 - AluJb SINE Alu -35 277 1 2338 102 0 9 chr15 36766425 36766740 -64613781 - AluSq SINE Alu -1 312 1 1837 158 0 32 chr15 36766826 36766999 -64613522 - AluJb SINE Alu -6 306 146 2015 127 10 23 chr15 36766999 36767307 -64613214 - AluSx SINE Alu -4 308 5 1837 158 0 32 chr15 36767307 36767449 -64613072 - AluJb SINE Alu -166 146 1 2165 107 0 0 chr15 36767481 36767771 -64612750 - AluSx SINE Alu -22 290 1 397 284 60 8 chr15 36768718 36768852 -64611669 + L2 LINE L2 2720 2860 -454 2321 226 39 90 chr15 36768878 36769697 -64610824 + L1ME3 LINE L1 5367 6143 -19 2050 125 24 0 chr15 36770306 36770601 -64609920 + AluSx SINE Alu 2 303 -9 1948 135 0 26 chr15 36770609 36770913 -64609608 + AluSx SINE Alu 1 296 -16 297 100 0 0 chr15 36771146 36771196 -64609325 + (TG)n Simple_repeat Simple_repeat 2 51 0 1817 134 15 0 chr15 36771216 36771485 -64609036 - AluSx SINE Alu -39 273 1 2121 141 0 0 chr15 36771571 36771875 -64608646 - AluSx SINE Alu -6 306 3 2084 89 9 92 chr15 36771897 36772224 -64608297 - AluSp SINE Alu -13 300 1 194 333 0 14 chr15 36773680 36773752 -64606769 + MER5B DNA MER1_type 4 74 -104 374 336 30 8 chr15 36774035 36774169 -64606352 - L3 LINE CR1 -18 1559 1423 1800 129 34 24 chr15 36774573 36774867 -64605654 + AluSx SINE Alu 1 297 -15 2299 91 10 0 chr15 36775812 36776108 -64604413 + AluSg SINE Alu 1 299 -11 235 392 8 0 chr15 36776234 36776359 -64604162 + L2 LINE L2 2934 3059 -213 1704 155 0 52 chr15 36776489 36776633 -64603888 + AluJo SINE Alu 1 122 -190 2307 92 0 19 chr15 36776633 36776948 -64603573 + AluSc SINE Alu 1 309 0 1704 155 0 52 chr15 36776948 36777113 -64603408 + AluJo SINE Alu 122 294 -18 1880 175 0 0 chr15 36777357 36777660 -64602861 + AluJo SINE Alu 7 309 -3 631 208 132 108 chr15 36777669 36777703 -64602818 + L1MC5 LINE L1 7480 7512 -449 1464 190 13 39 chr15 36777703 36778008 -64602513 + AluJb SINE Alu 1 297 -15 631 208 132 108 chr15 36778008 36778074 -64602447 + L1MC5 LINE L1 7512 7575 -386 2384 86 0 0 chr15 36778074 36778365 -64602156 - AluY SINE Alu -20 291 1 631 208 132 108 chr15 36778365 36778687 -64601834 + L1MC5 LINE L1 7575 7913 -48 2082 128 3 0 chr15 36779608 36779898 -64600623 - AluSx SINE Alu -21 291 1 846 229 37 16 chr15 36780689 36780877 -64599644 + MER58A DNA MER1_type 2 193 -31 1651 198 3 13 chr15 36780892 36781206 -64599315 - AluJb SINE Alu -1 311 1 1562 132 73 38 chr15 36782151 36782438 -64598083 + AluJb SINE Alu 2 298 -14 2352 90 0 0 chr15 36782488 36782788 -64597733 + AluSq SINE Alu 14 313 0 781 136 8 30 chr15 36783344 36783476 -64597045 + FLAM_C SINE Alu 5 133 0 366 23 0 0 chr15 36783512 36783555 -64596966 + (TG)n Simple_repeat Simple_repeat 2 44 0 1757 169 41 0 chr15 36783907 36784082 -64596439 - AluJb SINE Alu -5 307 114 189 0 0 0 chr15 36784082 36784103 -64596418 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 1757 169 41 0 chr15 36784103 36784222 -64596299 - AluJb SINE Alu -198 114 1 1861 106 3 94 chr15 36784303 36784623 -64595898 + AluJb SINE Alu 1 291 -21 1774 86 126 11 chr15 36785267 36785536 -64594985 + AluSg1 SINE Alu 1 300 -9 25 0 0 0 chr15 36785951 36785976 -64594545 + AT_rich Low_complexity Low_complexity 1 25 0 1813 166 24 0 chr15 36785985 36786280 -64594241 + AluJb SINE Alu 1 302 -10 1993 121 0 56 chr15 36786285 36786607 -64593914 + AluSg SINE Alu 1 304 -6 550 266 23 22 chr15 36786619 36786870 -64593651 + L1ME LINE L1 769 1304 -4697 27 0 0 0 chr15 36787204 36787231 -64593290 + AT_rich Low_complexity Low_complexity 1 27 0 556 141 0 3 chr15 36787280 36787521 -64593000 + AluSx SINE Alu 1 310 -2 978 246 108 38 chr15 36787532 36787873 -64592648 + MLT1A1 LTR MaLR 1 365 0 255 111 74 19 chr15 36787943 36787997 -64592524 + MER4D LTR ERV1 777 833 -70 2136 129 0 28 chr15 36788019 36788336 -64592185 + AluSx SINE Alu 5 312 0 2221 84 21 0 chr15 36788452 36788739 -64591782 + AluSx SINE Alu 1 293 -19 1143 258 115 8 chr15 36788852 36789332 -64591189 + L1ME LINE L1 2269 2799 -3281 770 132 0 35 chr15 36789342 36789456 -64591065 - FRAM SINE Alu -18 158 49 553 256 66 5 chr15 36789459 36789670 -64590851 + L1ME LINE L1 2803 3026 -3054 1737 175 0 7 chr15 36789675 36789967 -64590554 + AluSx SINE Alu 1 290 -22 301 211 14 0 chr15 36790044 36790115 -64590406 - MER58 DNA MER1_type -2307 113 42 2276 107 10 0 chr15 36790116 36790424 -64590097 + AluSx SINE Alu 1 311 -1 2719 174 56 14 chr15 36790433 36790949 -64589572 + L1MB5 LINE L1 5585 6122 -52 2189 90 52 0 chr15 36790949 36791238 -64589283 - AluSp SINE Alu -9 304 1 934 204 24 0 chr15 36791250 36791417 -64589104 - AluJb SINE Alu -141 171 1 291 151 0 0 chr15 36791424 36791477 -64589044 + L1MB4 LINE L1 6128 6180 0 1462 184 16 20 chr15 36791515 36791820 -64588701 + AluJo SINE Alu 9 312 0 2320 99 3 0 chr15 36792032 36792334 -64588187 - AluSg SINE Alu -7 303 1 785 177 8 0 chr15 36793101 36793231 -64587290 + AluJo/FLAM SINE Alu 2 132 -180 2050 124 3 23 chr15 36793233 36793532 -64586989 + AluSp SINE Alu 1 293 -20 2094 133 0 7 chr15 36793536 36793836 -64586685 + AluSx SINE Alu 1 298 -14 1654 112 0 133 chr15 36794092 36794430 -64586091 - AluSg SINE Alu -17 293 1 293 281 47 99 chr15 36794992 36795184 -64585337 - MIR SINE MIR -73 189 8 1906 157 10 0 chr15 36795850 36796144 -64584377 + AluJo SINE Alu 1 297 -15 1260 35 0 0 chr15 36796209 36796354 -64584167 - L1PA5 LINE L1 -3 6151 6007 2318 101 3 22 chr15 36796404 36796721 -64583800 - AluSp SINE Alu -2 311 1 201 154 0 0 chr15 36797028 36797067 -64583454 + A-rich Low_complexity Low_complexity 1 39 0 1504 71 0 0 chr15 36797399 36797582 -64582939 + AluSc SINE Alu 1 183 -126 189 0 0 0 chr15 36797622 36797643 -64582878 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 2356 75 3 0 chr15 36797742 36798037 -64582484 - AluY SINE Alu -13 298 3 1787 149 31 3 chr15 36799708 36799996 -64580525 - AluSx SINE Alu -15 297 2 1444 144 26 139 chr15 36800231 36800437 -64580084 - AluYb8 SINE Alu -1 307 154 2151 101 0 0 chr15 36800437 36800714 -64579807 - AluY SINE Alu -34 277 1 1444 144 26 139 chr15 36800714 36800853 -64579668 - AluYb8 SINE Alu -154 154 1 2056 125 4 0 chr15 36801039 36801345 -64579176 + AluSx SINE Alu 1 307 0 1320 190 0 0 chr15 36801472 36801693 -64578828 + AluJo SINE Alu 53 273 -39 2302 102 0 0 chr15 36801863 36802167 -64578354 - AluY SINE Alu -7 304 1 1438 222 17 10 chr15 36802524 36802817 -64577704 - AluJb SINE Alu -17 295 1 2381 82 3 0 chr15 36802864 36803158 -64577363 - AluSg SINE Alu -15 295 1 2136 120 17 3 chr15 36803819 36804119 -64576402 + AluSq SINE Alu 1 304 -9 555 191 0 9 chr15 36804453 36804558 -64575963 + FLAM_C SINE Alu 40 143 0 365 244 98 16 chr15 36805207 36805330 -64575191 - MIR SINE MIR -61 201 69 2133 101 27 3 chr15 36805534 36805832 -64574689 + AluSx SINE Alu 1 305 -7 2286 115 0 0 chr15 36806928 36807232 -64573289 + AluSq SINE Alu 1 304 -9 1637 174 0 60 chr15 36807242 36807379 -64573142 + AluJb SINE Alu 1 145 -167 2278 89 7 17 chr15 36807379 36807681 -64572840 + AluSq SINE Alu 1 299 -14 1637 174 0 60 chr15 36807681 36807859 -64572662 + AluJb SINE Alu 145 297 -15 2159 88 27 10 chr15 36807961 36808257 -64572264 + AluY SINE Alu 1 301 -10 306 194 112 20 chr15 36808269 36808367 -64572154 + L1MC4a LINE L1 7197 7303 -505 1946 145 3 26 chr15 36808384 36808694 -64571827 + AluSx SINE Alu 1 303 -9 304 317 49 32 chr15 36808813 36808936 -64571585 - L1 LINE L1 -1317 4829 4705 266 270 0 0 chr15 36809084 36809158 -64571363 + L1MC4 LINE L1 7940 8013 -29 1977 151 3 0 chr15 36809238 36809543 -64570978 + AluSx SINE Alu 1 306 -6 34 42 0 0 chr15 36809676 36809724 -64570797 + AT_rich Low_complexity Low_complexity 1 48 0 1481 197 11 0 chr15 36809733 36809997 -64570524 - AluJb SINE Alu -45 267 1 1136 110 0 0 chr15 36810819 36810973 -64569548 - AluSg/x SINE Alu -11 299 146 2391 96 0 0 chr15 36811329 36811630 -64568891 + AluSx SINE Alu 1 301 -11 2033 151 20 23 chr15 36812029 36812373 -64568148 - MER2 DNA MER2_type -1 343 1 1982 106 3 53 chr15 36813043 36813365 -64567156 - AluSc SINE Alu -3 306 1 236 250 0 0 chr15 36813778 36813842 -64566679 + L1ME3 LINE L1 6099 6162 0 1854 150 16 3 chr15 36813867 36814174 -64566347 + AluSq SINE Alu 1 311 -2 1939 118 30 0 chr15 36814430 36814727 -64565794 + AluSp SINE Alu 1 306 -7 2521 197 30 31 chr15 36814868 36815254 -64565267 + L1MB7 LINE L1 5573 5959 -225 2048 98 7 3 chr15 36815254 36815550 -64564971 + AluSx SINE Alu 1 297 -15 2521 197 30 31 chr15 36815550 36815766 -64564755 + L1MB7 LINE L1 5959 6174 -10 2240 96 3 0 chr15 36815883 36816185 -64564336 - AluSx SINE Alu -9 303 1 970 113 0 0 chr15 36816188 36816321 -64564200 - AluSq/x SINE Alu -179 133 1 1640 94 17 0 chr15 36816331 36816564 -64563957 - L1PA10 LINE L1 -10 6158 5922 2305 80 3 0 chr15 36816612 36816913 -64563608 - AluSc SINE Alu -7 302 1 1668 228 6 51 chr15 36817516 36817736 -64562785 + L1MB7 LINE L1 5717 5945 -239 1439 176 81 3 chr15 36817736 36818020 -64562501 + AluJo SINE Alu 1 306 -6 1668 228 6 51 chr15 36818020 36818106 -64562415 + L1MB7 LINE L1 5945 6033 -151 2233 97 0 0 chr15 36818106 36818406 -64562115 + AluSg SINE Alu 1 300 -10 1668 228 6 51 chr15 36818406 36818543 -64561978 + L1MB7 LINE L1 6033 6141 -43 1590 158 65 0 chr15 36818543 36818835 -64561686 + AluJb SINE Alu 1 311 -1 1668 228 6 51 chr15 36818835 36818862 -64561659 + L1MB7 LINE L1 6141 6168 -16 608 312 92 25 chr15 36819072 36819427 -64561094 + L2 LINE L2 2668 3046 -267 319 250 157 36 chr15 36819431 36819571 -64560950 + L2 LINE L2 3156 3312 -1 1695 127 62 42 chr15 36819715 36820018 -64560503 + MER46B DNA MER2_type 1 188 -2543 2192 102 0 7 chr15 36820018 36820313 -64560208 + AluSq SINE Alu 1 293 -20 1695 127 62 42 chr15 36820313 36820363 -64560158 + MER46B DNA MER2_type 188 236 0 340 80 0 0 chr15 36822050 36822100 -64558421 - AluSq SINE Alu -1 300 251 1634 82 0 0 chr15 36822100 36822307 -64558214 - AluSq SINE Alu -106 207 1 1816 117 62 4 chr15 36822461 36822735 -64557786 - AluSq SINE Alu -23 290 1 1248 111 0 0 chr15 36822748 36822940 -64557581 + AluSq SINE Alu 117 308 0 1056 76 0 0 chr15 36822979 36823111 -64557410 - AluY SINE Alu -179 132 1 314 242 158 0 chr15 36823194 36823359 -64557162 + L1MB7 LINE L1 5019 5209 -937 1336 198 58 4 chr15 36823359 36823637 -64556884 + AluJb SINE Alu 6 298 -14 611 165 78 121 chr15 36823639 36823925 -64556596 + L1MB7 LINE L1 5199 5484 -700 1837 161 26 0 chr15 36823925 36824229 -64556292 + AluJo SINE Alu 1 312 0 319 206 0 135 chr15 36824290 36824416 -64556105 + L1MB7 LINE L1 6049 6157 -27 1556 178 14 3 chr15 36824461 36824754 -64555767 + AluJo SINE Alu 1 296 -16 2261 71 17 0 chr15 36825040 36825336 -64555185 - AluY SINE Alu -10 301 1 703 107 62 0 chr15 36825671 36825783 -64554738 - L1MB3 LINE L1 0 6183 6065 2006 131 3 3 chr15 36825786 36826091 -64554430 - AluSx SINE Alu -7 305 1 886 186 76 107 chr15 36826472 36826514 -64554007 + MER20B DNA MER1_type 437 479 -304 2381 50 3 7 chr15 36826514 36826812 -64553709 - AluY SINE Alu -14 297 1 886 186 76 107 chr15 36826812 36826875 -64553646 + MER20B DNA MER1_type 479 542 -241 2013 125 0 3 chr15 36826875 36827163 -64553358 + AluSg SINE Alu 4 290 -20 886 186 76 107 chr15 36827163 36827348 -64553173 + MER20B DNA MER1_type 542 718 -65 1991 98 10 14 chr15 36827348 36827645 -64552876 + AluSx SINE Alu 1 296 -16 886 186 76 107 chr15 36827645 36827707 -64552814 + MER20B DNA MER1_type 718 780 -3 2099 112 0 3 chr15 36828350 36828653 -64551868 - AluSx SINE Alu -10 302 1 2019 91 50 17 chr15 36828897 36829194 -64551327 + AluSp SINE Alu 2 308 -5 2056 124 3 10 chr15 36829496 36829802 -64550719 - AluSx SINE Alu -8 304 1 528 257 140 23 chr15 36830352 36830523 -64549998 - MIR SINE MIR -44 218 28 1730 137 44 31 chr15 36830617 36830938 -64549583 - L1MC3 LINE L1 -745 7040 6716 828 133 7 7 chr15 36830938 36831073 -64549448 + AluJo SINE Alu 1 135 -177 1618 183 33 0 chr15 36831074 36831374 -64549147 + AluJo SINE Alu 1 310 -2 818 129 48 48 chr15 36831460 36831607 -64548914 + AluJb SINE Alu 152 298 -14 2607 156 98 98 chr15 36831607 36832197 -64548324 - L1MC3 LINE L1 -1059 6726 6137 1538 136 4 55 chr15 36832197 36832470 -64548051 + AluSx SINE Alu 30 288 -24 1940 138 0 0 chr15 36832480 36832782 -64547739 + AluSx SINE Alu 1 302 0 2083 116 0 0 chr15 36832782 36833076 -64547445 + AluSg SINE Alu 1 294 -16 2607 156 98 98 chr15 36833076 36833157 -64547364 - L1MC3 LINE L1 -1655 6130 6042 2397 61 0 10 chr15 36833270 36833582 -64546939 + AluY SINE Alu 1 309 -2 330 265 78 10 chr15 36833666 36833768 -64546753 - MIR SINE MIR 0 262 154 1957 109 21 0 chr15 36834134 36834417 -64546104 + AluSx SINE Alu 1 289 -23 1999 97 10 42 chr15 36834469 36834613 -64545908 + AluSq SINE Alu 1 148 -165 2244 102 0 0 chr15 36834613 36834908 -64545613 + AluSx SINE Alu 2 296 -16 1999 97 10 42 chr15 36834908 36835074 -64545447 + AluSq SINE Alu 148 301 -12 2024 114 0 10 chr15 36835111 36835408 -64545113 - AluSc SINE Alu -15 294 1 1682 154 33 0 chr15 36835410 36835683 -64544838 - AluJb SINE Alu -20 292 11 2105 110 3 0 chr15 36836126 36836418 -64544103 + AluSx SINE Alu 1 293 -19 2207 90 7 0 chr15 36836492 36836780 -64543741 + AluSq SINE Alu 8 297 -16 1342 188 19 8 chr15 36836898 36837164 -64543357 - AluJb SINE Alu -43 269 1 238 294 245 7 chr15 36837218 36837361 -64543160 + MIR SINE MIR 56 232 -30 2294 88 0 3 chr15 36837469 36837776 -64542745 + AluSc SINE Alu 1 306 -3 1705 153 14 7 chr15 36837878 36838172 -64542349 - AluJb SINE Alu -11 301 6 2138 69 7 14 chr15 36838222 36838530 -64541991 - AluSq SINE Alu 0 306 1 727 149 149 0 chr15 36838577 36838718 -64541803 - FRAM SINE Alu -14 162 1 2342 77 0 0 chr15 36838949 36839249 -64541272 + AluSg SINE Alu 1 300 -10 1268 199 107 44 chr15 36839353 36839389 -64541132 + L1MB7 LINE L1 5790 5822 -362 2206 94 0 0 chr15 36839389 36839688 -64540833 + AluSx SINE Alu 1 299 -13 1268 199 107 44 chr15 36839688 36840017 -64540504 + L1MB7 LINE L1 5822 6178 -6 28 91 0 0 chr15 36840937 36841014 -64539507 + GC_rich Low_complexity Low_complexity 1 77 0 215 160 20 0 chr15 36841116 36841166 -64539355 + (CGG)n Simple_repeat Simple_repeat 2 52 0 290 128 0 124 chr15 36842028 36842111 -64538410 - FLAM SINE Alu -22 111 50 322 188 0 94 chr15 36842111 36842196 -64538325 + FLAM SINE Alu 54 130 -3 200 311 98 41 chr15 36842299 36842421 -64538100 + L2 LINE L2 1801 1929 -1385 2201 82 6 25 chr15 36842444 36842759 -64537762 + AluSq SINE Alu 5 313 0 1927 97 7 55 chr15 36842777 36843085 -64537436 + AluSx SINE Alu 1 293 -19 2060 89 14 10 chr15 36843112 36843404 -64537117 + AluSg SINE Alu 1 293 -17 363 203 81 0 chr15 36843430 36843504 -64537017 - MER2 DNA MER2_type -1 344 265 567 242 8 8 chr15 36843504 36843636 -64536885 + FLAM_C SINE Alu 2 133 -10 736 101 42 0 chr15 36843657 36843776 -64536745 - MER2 DNA MER2_type -139 206 83 2155 51 0 11 chr15 36843780 36844055 -64536466 + AluY SINE Alu 18 289 -22 2714 240 46 32 chr15 36844223 36845057 -64535464 + L1MC4a LINE L1 6857 7701 -107 2316 96 3 0 chr15 36845058 36845370 -64535151 + AluSp SINE Alu 1 313 0 2147 121 0 3 chr15 36845382 36845695 -64534826 + AluSx SINE Alu 1 312 0 2114 109 0 13 chr15 36845789 36846091 -64534430 + AluSx SINE Alu 1 298 -14 2028 109 17 0 chr15 36846571 36846865 -64533656 + AluSp SINE Alu 1 299 -14 1432 215 7 0 chr15 36846873 36847180 -64533341 + AluJo SINE Alu 1 309 -3 1996 134 7 0 chr15 36847184 36847482 -64533039 + AluSx SINE Alu 4 303 -9 647 201 59 0 chr15 36847517 36847686 -64532835 - L1M4 LINE L1 -797 6160 5982 955 163 0 18 chr15 36847699 36847865 -64532656 - AluSp SINE Alu -14 299 137 927 203 49 102 chr15 36847873 36847952 -64532569 - L1M4 LINE L1 -987 5970 5888 1326 172 0 104 chr15 36847952 36848278 -64532243 + AluJb SINE Alu 3 294 -18 927 203 49 102 chr15 36848278 36848523 -64531998 - L1M4 LINE L1 -1069 5888 5663 2315 74 3 0 chr15 36848530 36848829 -64531692 + AluY SINE Alu 1 300 -11 3784 227 80 98 chr15 36848874 36849114 -64531407 - L1M4 LINE L1 -4992 1863 1620 1666 167 44 0 chr15 36849114 36849408 -64531113 - AluJb SINE Alu -5 307 1 3784 227 80 98 chr15 36849408 36849455 -64531066 - L1M4 LINE L1 -5235 1620 1574 2066 111 7 0 chr15 36849455 36849752 -64530769 + AluSx SINE Alu 1 299 -13 3784 227 80 98 chr15 36849752 36850025 -64530496 - L1M4 LINE L1 -5281 1574 1298 1758 174 7 0 chr15 36850025 36850324 -64530197 + AluJb SINE Alu 1 301 -11 3784 227 80 98 chr15 36850324 36850443 -64530078 - L1M4 LINE L1 -5557 1298 1178 1949 118 14 0 chr15 36850443 36850739 -64529782 - AluSx SINE Alu -12 300 1 3784 227 80 98 chr15 36850739 36851742 -64528779 - L1M4 LINE L1 -5677 1178 199 963 140 34 34 chr15 36851742 36851920 -64528601 - Tigger2a DNA MER2_type -256 178 1 454 218 40 0 chr15 36851920 36852021 -64528500 + L1M4 LINE L1 4311 4415 -1731 1187 127 10 63 chr15 36852021 36852072 -64528449 + MSTB LTR MaLR 6 58 -368 2146 98 3 35 chr15 36852072 36852390 -64528131 + AluSg SINE Alu 1 308 -2 1187 127 10 63 chr15 36852390 36852543 -64527978 + MSTB LTR MaLR 58 199 -227 2074 99 3 3 chr15 36852544 36852836 -64527685 + AluSc SINE Alu 1 292 -17 2210 93 3 0 chr15 36852837 36853139 -64527382 + AluSp SINE Alu 1 303 -10 2003 176 61 75 chr15 36853142 36853182 -64527339 + L1MC4 LINE L1 25 64 -8372 1912 130 17 7 chr15 36853182 36853482 -64527039 - AluSx SINE Alu -9 303 1 2003 176 61 75 chr15 36853482 36854113 -64526408 + L1MC4 LINE L1 64 702 -7734 2241 91 0 0 chr15 36854113 36854411 -64526110 - AluSp SINE Alu -13 300 3 2003 176 61 75 chr15 36854411 36854471 -64526050 + L1MC4 LINE L1 702 8055 -381 1106 72 0 0 chr15 36854475 36854614 -64525907 + AluSq/x SINE Alu 1 139 -173 1165 223 51 64 chr15 36854636 36855078 -64525443 + L1MDa LINE L1 278 724 -5816 2148 96 0 3 chr15 36855078 36855371 -64525150 + AluSg SINE Alu 5 296 -14 1165 223 51 64 chr15 36855371 36855750 -64524771 + L1MDa LINE L1 724 1991 -4549 2063 130 0 0 chr15 36855752 36856053 -64524468 + AluSx SINE Alu 1 301 -11 1323 131 0 0 chr15 36856053 36856251 -64524270 + AluSx SINE Alu 29 226 -86 866 146 8 18 chr15 36856251 36856419 -64524102 + LTR7 LTR ERV1 1 218 -232 783 126 40 60 chr15 36856621 36856772 -64523749 + LTR7 LTR ERV1 303 450 0 2050 175 93 24 chr15 36856772 36857235 -64523286 + HERVH LTR ERV1 1 495 -7218 16806 174 20 47 chr15 36857259 36860089 -64520432 + HERVH LTR ERV1 778 3106 -4440 2078 114 0 29 chr15 36860089 36860405 -64520116 + AluY SINE Alu 1 307 -4 16806 174 20 47 chr15 36860405 36861604 -64518917 + HERVH LTR ERV1 3106 4336 -3210 1162 142 5 0 chr15 36861592 36861782 -64518739 + HERVH LTR ERV1 6758 6948 -765 * 3699 88 9 39 chr15 36861833 36862391 -64518130 + HERVH LTR ERV1 7173 7713 0 902 120 8 18 chr15 36862391 36862559 -64517962 + LTR7 LTR ERV1 1 218 -232 980 124 59 0 chr15 36862580 36862733 -64517788 - AluSx SINE Alu -150 162 1 444 271 77 0 chr15 36862765 36862920 -64517601 + L1M4 LINE L1 4420 4586 -1560 2153 123 0 13 chr15 36862920 36863229 -64517292 - AluSx SINE Alu -7 305 1 235 0 0 0 chr15 36863238 36863264 -64517257 + (TTTA)n Simple_repeat Simple_repeat 2 172 0 1632 128 30 8 chr15 36863264 36863491 -64517030 - AluSp SINE Alu -5 308 52 1555 149 8 0 chr15 36863490 36863725 -64516796 + AluSg SINE Alu 64 300 -10 * 25 0 0 0 chr15 36863725 36863750 -64516771 + AT_rich Low_complexity Low_complexity 1 25 0 1998 148 7 0 chr15 36863802 36864129 -64516392 + AluSx SINE Alu 1 312 0 3051 149 33 38 chr15 36864130 36864360 -64516161 + MER41B LTR ERV1 1 231 -404 2425 84 7 0 chr15 36864360 36864668 -64515853 + AluSq SINE Alu 1 310 -3 3051 149 33 38 chr15 36864668 36864988 -64515533 + MER41B LTR ERV1 231 548 -87 332 95 0 48 chr15 36865000 36865063 -64515458 - L1MA3 LINE L1 0 6305 6246 2224 116 0 0 chr15 36865094 36865387 -64515134 + AluSq SINE Alu 5 297 -16 900 106 57 0 chr15 36865473 36865614 -64514907 - L1PB1 LINE L1 -4 6147 5999 1974 134 62 0 chr15 36865617 36865907 -64514614 - AluSx SINE Alu -4 308 1 551 187 9 0 chr15 36865910 36866017 -64514504 + MER41B LTR ERV1 520 627 -8 456 277 0 0 chr15 36866029 36866159 -64514362 + L1M4 LINE L1 4672 4801 -1345 483 108 0 117 chr15 36866160 36866204 -64514317 + LTR8A LTR ERV1 1 49 -678 2124 131 13 0 chr15 36866204 36866510 -64514011 + AluSx SINE Alu 1 310 -2 483 108 0 117 chr15 36866510 36866576 -64513945 + LTR8A LTR ERV1 49 98 -629 * 789 112 8 8 chr15 36866568 36866693 -64513828 + LTR9B LTR ERV1 437 561 -83 1832 102 0 0 chr15 36866744 36866990 -64513531 + AluSg SINE Alu 53 298 -12 2090 125 81 74 chr15 36866991 36867345 -64513176 + LTR8A LTR ERV1 214 564 -163 1818 127 25 7 chr15 36867345 36867620 -64512901 + AluSx SINE Alu 1 280 -32 192 97 0 0 chr15 36867620 36867651 -64512870 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 2090 125 81 74 chr15 36867651 36867742 -64512779 + LTR8A LTR ERV1 563 663 -64 318 85 489 0 chr15 36867797 36867891 -64512630 - L1MB7 LINE L1 -12 6172 6033 192 77 0 0 chr15 36867923 36867949 -64512572 + (A)n Simple_repeat Simple_repeat 1 26 0 499 160 0 0 chr15 36867956 36868031 -64512490 + AluS SINE Alu 2 76 -236 2528 93 55 22 chr15 36868031 36868138 -64512383 - MER51B LTR ERV1 0 377 275 2010 142 10 0 chr15 36868138 36868447 -64512074 + AluSx SINE Alu 1 312 0 2528 93 55 22 chr15 36868447 36868704 -64511817 - MER51B LTR ERV1 -102 275 1 2129 134 3 87 chr15 36868706 36868883 -64511638 - MER51B-int LTR ERV1 -1 7815 7685 2298 102 0 0 chr15 36868883 36869176 -64511345 - AluSg SINE Alu -17 293 1 2129 134 3 87 chr15 36869176 36869379 -64511142 - MER51B-int LTR ERV1 -131 7685 7467 2231 105 3 6 chr15 36869396 36869709 -64510812 + AluSx SINE Alu 1 312 0 551 158 11 0 chr15 36869748 36869843 -64510678 - LTR54B LTR ERV1 -399 99 4 3047 110 53 32 chr15 36869843 36870172 -64510349 - MER51B-int LTR ERV1 -655 6882 6539 2189 126 0 3 chr15 36870172 36870474 -64510047 - AluSg SINE Alu -9 301 1 3047 110 53 32 chr15 36870474 36870616 -64509905 - MER51B-int LTR ERV1 -998 6539 6401 1193 138 5 57 chr15 36870619 36870829 -64509692 + AluSp SINE Alu 1 199 -114 539 48 0 0 chr15 36870829 36870892 -64509629 + AluY SINE Alu 65 127 -184 429 141 0 0 chr15 36870892 36870963 -64509558 + (CA)n Simple_repeat Simple_repeat 1 71 0 1319 79 0 0 chr15 36870963 36871128 -64509393 + AluY SINE Alu 130 294 -17 777 134 127 0 chr15 36871131 36871265 -64509256 + AluSp SINE Alu 127 277 -36 2101 107 3 17 chr15 36871266 36871564 -64508957 + AluSp SINE Alu 1 294 -19 3142 114 18 23 chr15 36871564 36871652 -64508869 - MER51B-int LTR ERV1 -1126 6411 6324 2254 73 0 0 chr15 36871652 36871926 -64508595 - AluSg SINE Alu 0 310 37 3142 114 18 23 chr15 36871926 36872458 -64508063 - MER51B-int LTR ERV1 -1213 6324 5747 1998 111 0 77 chr15 36872459 36872784 -64507737 + AluSx SINE Alu 1 300 -12 319 103 184 92 chr15 36872784 36872871 -64507650 - MER51B-int LTR ERV1 -2194 5343 5249 * 2115 94 5 4 chr15 36872870 36873260 -64507261 - MER41-int LTR ERV1 -2572 2645 2211 2073 160 48 28 chr15 36873239 36873326 -64507195 - MER41-int LTR ERV1 -2774 3172 3088 * 1995 158 0 0 chr15 36873326 36873623 -64506898 - AluSx SINE Alu -13 299 3 2073 160 48 28 chr15 36873623 36873635 -64506886 - MER41-int LTR ERV1 -2858 3088 3078 2212 112 3 0 chr15 36873635 36873930 -64506591 - AluSq SINE Alu -17 296 1 2215 92 13 29 chr15 36873940 36874254 -64506267 - AluSp SINE Alu -4 309 1 2073 160 48 28 chr15 36874254 36874660 -64505861 - MER41-int LTR ERV1 -2876 3070 1474 * 4906 103 133 1 chr15 36874632 36875458 -64505063 - MER41-int LTR ERV1 -4489 3327 2393 4940 98 6 20 chr15 36875459 36876043 -64504478 + LTR8 LTR ERV1 1 575 -116 2294 91 3 3 chr15 36876043 36876340 -64504181 + AluSg SINE Alu 5 301 -9 4940 98 6 20 chr15 36876340 36876448 -64504073 + LTR8 LTR ERV1 575 683 -8 4478 138 50 31 chr15 36876450 36877797 -64502724 + pTR5 LTR ERV1 741 2437 -1 700 106 139 0 chr15 36877809 36877960 -64502561 - MER41-int LTR ERV1 -5421 2395 2224 * 728 95 135 7 chr15 36877944 36878092 -64502429 - MER41-int LTR ERV1 -5697 2119 1953 1137 106 0 0 chr15 36878114 36878255 -64502266 - AluSg/x SINE Alu -27 285 145 989 186 14 59 chr15 36878369 36878590 -64501931 - AluJo SINE Alu -15 297 87 1491 140 132 4 chr15 36878746 36878996 -64501525 - AluJb SINE Alu -30 282 1 2533 64 0 3 chr15 36879097 36879410 -64501111 + AluSq SINE Alu 1 312 -1 2203 94 14 0 chr15 36879780 36880068 -64500453 - AluSc SINE Alu -13 296 5 227 216 0 0 chr15 36880224 36880261 -64500260 + Alu SINE Alu 230 266 -37 34 42 0 0 chr15 36880549 36880597 -64499924 + AT_rich Low_complexity Low_complexity 1 48 0 899 114 0 0 chr15 36880597 36880711 -64499810 - AluSg/x SINE Alu -26 284 171 1612 181 14 10 chr15 36880721 36881009 -64499512 - AluJo SINE Alu -23 289 1 2333 109 0 3 chr15 36881095 36881406 -64499115 - AluSx SINE Alu -2 310 1 620 220 38 0 chr15 36881447 36881606 -64498915 + L1MD3 LINE L1 7737 7901 -94 1598 122 24 116 chr15 36881607 36881935 -64498586 + AluYb8 SINE Alu 5 302 -16 377 143 14 0 chr15 36881970 36882040 -64498481 + L1MA5A LINE L1 6222 6292 -5 494 139 25 0 chr15 36882052 36882131 -64498390 + AluSx SINE Alu 2 82 -231 1506 140 0 9 chr15 36882306 36882534 -64497987 + AluSx SINE Alu 70 295 -15 2398 103 0 0 chr15 36882534 36882844 -64497677 + AluSg SINE Alu 1 310 0 530 181 4 2 chr15 36882867 36882956 -64497565 + L1MD3 LINE L1 6261 6348 -1637 692 168 38 23 chr15 36882956 36883087 -64497434 + FLAM_C SINE Alu 1 133 0 2205 133 0 0 chr15 36883097 36883406 -64497115 + AluSx SINE Alu 1 309 -3 2195 132 0 3 chr15 36883415 36883726 -64496795 + AluSx SINE Alu 1 310 -2 571 270 129 22 chr15 36883732 36884043 -64496478 + L1ME LINE L1 4749 5092 -1054 2374 112 0 0 chr15 36884045 36884357 -64496164 + AluSx SINE Alu 1 312 0 1135 207 3 116 chr15 36884366 36884695 -64495826 - AluJo SINE Alu -9 293 2 403 151 4 30 chr15 36884701 36884784 -64495737 + Alu SINE Alu 1 53 -250 31 0 0 0 chr15 36884792 36884823 -64495698 + AT_rich Low_complexity Low_complexity 1 31 0 2251 109 0 0 chr15 36884943 36885256 -64495265 + AluSx SINE Alu 1 313 0 532 270 178 2 chr15 36885257 36885477 -64495044 + L1ME LINE L1 5483 5735 -431 2020 128 7 0 chr15 36885514 36885811 -64494710 - AluSg SINE Alu -11 299 1 23 68 0 0 chr15 36886221 36886265 -64494256 + AT_rich Low_complexity Low_complexity 1 44 0 1300 240 130 18 chr15 36886987 36887379 -64493142 - LTR33A LTR ERVL 0 523 88 297 342 36 0 chr15 36887406 36887517 -64493004 + L3 LINE CR1 1192 1306 -271 2395 95 3 0 chr15 36887538 36887842 -64492679 + AluSg SINE Alu 1 305 -5 384 167 15 0 chr15 36888015 36888081 -64492440 - MLT1F1 LTR MaLR 0 567 501 2496 46 0 16 chr15 36888415 36888722 -64491799 + AluY SINE Alu 1 302 -9 2313 43 50 0 chr15 36889730 36890010 -64490511 - AluYa5 SINE Alu -17 294 1 24 0 0 0 chr15 36890300 36890324 -64490197 + AT_rich Low_complexity Low_complexity 1 24 0 1073 233 96 52 chr15 36890566 36890931 -64489590 - MLT1F1 LTR MaLR -52 515 135 621 202 9 0 chr15 36891563 36891677 -64488844 + FLAM_C SINE Alu 1 115 -28 1102 118 13 0 chr15 36891693 36891846 -64488675 - AluSg/x SINE Alu -21 289 135 2337 105 0 0 chr15 36891859 36892155 -64488366 - AluSg SINE Alu -14 296 1 1126 160 11 0 chr15 36892170 36892345 -64488176 + AluJb SINE Alu 130 306 -6 634 157 107 8 chr15 36892410 36892531 -64487990 + FLAM_C SINE Alu 1 133 0 1476 163 37 4 chr15 36892635 36892880 -64487641 + AluJo SINE Alu 43 295 -17 2216 99 14 0 chr15 36892887 36893180 -64487341 + AluSp SINE Alu 1 297 -16 312 332 79 52 chr15 36893269 36893343 -64487178 + L2 LINE L2 2026 2097 -1217 2334 69 14 7 chr15 36893343 36893634 -64486887 - AluY SINE Alu -16 295 3 2311 97 3 7 chr15 36893643 36893943 -64486578 - AluSp SINE Alu -14 299 1 312 332 79 52 chr15 36893943 36894490 -64486031 + L2 LINE L2 2104 2674 -640 277 239 106 26 chr15 36894707 36894820 -64485701 - MER51B LTR ERV1 -240 137 16 2027 126 0 3 chr15 36895015 36895309 -64485212 - AluY SINE Alu -18 293 1 1401 218 31 10 chr15 36895665 36895954 -64484567 - AluJb SINE Alu -17 295 1 2240 95 7 7 chr15 36896001 36896296 -64484225 - AluSg SINE Alu -15 295 1 32 26 0 0 chr15 36897028 36897067 -64483454 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr15 36897158 36897185 -64483336 + AT_rich Low_complexity Low_complexity 1 27 0 1150 110 0 0 chr15 36897667 36897821 -64482700 + AluSg/x SINE Alu 148 301 -11 23 0 0 0 chr15 36898824 36898847 -64481674 + AT_rich Low_complexity Low_complexity 1 23 0 700 197 86 105 chr15 36899057 36899112 -64481409 - MER20B DNA MER1_type -6 777 722 2092 104 10 14 chr15 36899112 36899409 -64481112 - AluSx SINE Alu -15 297 2 700 197 86 105 chr15 36899409 36899595 -64480926 - MER20B DNA MER1_type -61 722 541 2125 128 0 3 chr15 36899595 36899885 -64480636 - AluSg SINE Alu -20 290 2 700 197 86 105 chr15 36899885 36899946 -64480575 - MER20B DNA MER1_type -242 541 480 2023 105 20 7 chr15 36899948 36900244 -64480277 + AluY SINE Alu 2 301 -10 1721 177 10 3 chr15 36900530 36900824 -64479697 - AluJo SINE Alu -16 296 1 285 185 46 69 chr15 36900887 36900995 -64479526 - L1MB8 LINE L1 -29 6155 6049 180 0 0 0 chr15 36901034 36901054 -64479467 + (TG)n Simple_repeat Simple_repeat 1 20 0 1783 185 26 0 chr15 36901055 36901358 -64479163 - AluJo SINE Alu -1 311 1 710 188 99 133 chr15 36901358 36901662 -64478859 - L1M4 LINE L1 -700 5484 5188 1453 191 8 8 chr15 36901662 36901924 -64478597 - AluJb SINE Alu -45 267 6 710 188 99 133 chr15 36901924 36902089 -64478432 - L1M4 LINE L1 -996 5188 5019 1115 76 0 0 chr15 36902173 36902305 -64478216 + AluY SINE Alu 1 132 -179 1319 111 0 0 chr15 36902344 36902536 -64477985 - AluSq SINE Alu 0 308 117 1934 117 62 4 chr15 36902549 36902823 -64477698 + AluSq SINE Alu 1 290 -23 1728 82 0 0 chr15 36902977 36903184 -64477337 + AluSq SINE Alu 1 207 -106 336 80 0 0 chr15 36903184 36903234 -64477287 + AluSq SINE Alu 251 300 -1 1743 128 62 40 chr15 36904915 36904965 -64475556 - MER46B DNA MER2_type -2495 236 189 2337 98 0 7 chr15 36904965 36905260 -64475261 - AluSq SINE Alu -20 293 1 1743 128 62 40 chr15 36905260 36905562 -64474959 - MER46B DNA MER2_type -2542 189 1 263 257 157 36 chr15 36905706 36905846 -64474675 - L2 LINE L2 -1 3312 3156 531 312 92 25 chr15 36905850 36906205 -64474316 - L2 LINE L2 -267 3046 2668 659 186 11 90 chr15 36906404 36906443 -64474078 - L1MB7 LINE L1 -19 6165 6124 1702 158 65 0 chr15 36906443 36906735 -64473786 - AluJb SINE Alu -1 311 1 659 186 11 90 chr15 36906735 36906872 -64473649 - L1MB7 LINE L1 -60 6124 6003 2127 107 10 3 chr15 36906872 36907171 -64473350 - AluSx SINE Alu -10 302 2 1769 171 0 7 chr15 36907318 36907610 -64472911 - AluSx SINE Alu -22 290 1 539 256 66 5 chr15 36907615 36907826 -64472695 - L1M4 LINE L1 -3054 3092 2869 560 118 0 0 chr15 36907829 36907905 -64472616 + FRAM SINE Alu 49 124 -52 1000 197 25 10 chr15 36908026 36908229 -64472292 - AluJo SINE Alu -106 206 1 216 247 260 0 chr15 36908283 36908356 -64472165 + MIR SINE MIR 56 147 -115 2334 104 0 3 chr15 36908534 36908842 -64471679 + AluSc SINE Alu 1 307 -2 512 311 23 27 chr15 36908974 36909234 -64471287 - AluSx SINE Alu -43 269 11 1217 137 0 0 chr15 36910107 36910290 -64470231 + AluSq SINE Alu 121 303 -10 1966 108 7 59 chr15 36910329 36910636 -64469885 + AluSx SINE Alu 3 293 -19 2185 89 14 10 chr15 36910663 36910955 -64469566 + AluSg SINE Alu 1 293 -17 347 216 81 0 chr15 36910981 36911055 -64469466 - MER2 DNA MER2_type -1 344 265 564 242 8 8 chr15 36911055 36911187 -64469334 + FLAM_C SINE Alu 2 133 -10 747 101 42 0 chr15 36911208 36911327 -64469194 - MER2 DNA MER2_type -139 206 83 2363 50 4 7 chr15 36911331 36911611 -64468910 + AluY SINE Alu 18 296 -15 1423 198 7 17 chr15 36912039 36912337 -64468184 + AluSx SINE Alu 3 297 -15 211 214 18 62 chr15 36912769 36912881 -64467640 + T-rich Low_complexity Low_complexity 2 108 0 424 295 7 13 chr15 36913083 36913232 -64467289 - AluSq/x SINE Alu -154 148 1 1581 136 30 8 chr15 36913234 36913494 -64467027 - AluSp SINE Alu 0 313 52 1555 149 8 0 chr15 36913494 36913728 -64466793 + AluSg SINE Alu 64 300 -10 25 0 0 0 chr15 36913728 36913753 -64466768 + AT_rich Low_complexity Low_complexity 1 25 0 1927 158 7 0 chr15 36913805 36914086 -64466435 + AluSx SINE Alu 1 299 -13 244 0 0 0 chr15 36914086 36914113 -64466408 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1927 158 7 0 chr15 36914113 36914128 -64466393 + AluSx SINE Alu 299 312 0 3037 149 31 38 chr15 36914129 36914359 -64466162 + MER41B LTR ERV1 1 231 -404 2512 81 0 0 chr15 36914359 36914668 -64465853 + AluSx SINE Alu 1 309 -3 3037 149 31 38 chr15 36914668 36914989 -64465532 + MER41B LTR ERV1 231 548 -87 332 95 0 48 chr15 36915001 36915064 -64465457 - L1MA3 LINE L1 0 6305 6246 2216 116 0 0 chr15 36915095 36915387 -64465134 + AluSq SINE Alu 5 296 -17 430 91 91 0 chr15 36915473 36915550 -64464971 - L1PB1 LINE L1 -4 6147 6064 290 188 29 14 chr15 36915777 36915846 -64464675 - L1PB1 LINE L1 -83 6068 5999 1929 138 62 0 chr15 36915849 36916138 -64464383 - AluSx SINE Alu -5 307 1 551 187 9 0 chr15 36916141 36916248 -64464273 + MER41A LTR ERV1 439 546 -8 456 277 0 0 chr15 36916260 36916390 -64464131 + L1M4 LINE L1 4672 4801 -1345 493 120 0 93 chr15 36916391 36916435 -64464086 + LTR8A LTR ERV1 1 47 -680 1798 166 16 3 chr15 36916435 36916743 -64463778 + AluSx SINE Alu 1 312 0 493 120 0 93 chr15 36916743 36916806 -64463715 + LTR8A LTR ERV1 47 98 -629 * 789 112 8 8 chr15 36916798 36916923 -64463598 + LTR9B LTR ERV1 437 561 -83 1832 102 0 0 chr15 36916974 36917220 -64463301 + AluSg SINE Alu 53 298 -12 1976 154 72 62 chr15 36917221 36917575 -64462946 + LTR8A LTR ERV1 214 508 -183 1844 136 25 7 chr15 36917575 36917861 -64462660 + AluSx SINE Alu 1 291 -21 1976 154 72 62 chr15 36917861 36918000 -64462521 + LTR8A LTR ERV1 508 644 -47 461 231 37 0 chr15 36918237 36918345 -64462176 + LTR8 LTR ERV1 533 644 -47 318 85 489 0 chr15 36918374 36918468 -64462053 - L1MB7 LINE L1 -12 6172 6033 210 71 0 0 chr15 36918500 36918528 -64461993 + (A)n Simple_repeat Simple_repeat 1 28 0 499 160 0 0 chr15 36918535 36918610 -64461911 + AluS SINE Alu 2 76 -237 2528 93 55 22 chr15 36918610 36918717 -64461804 - MER51B LTR ERV1 0 377 275 1581 199 13 0 chr15 36918717 36919023 -64461498 + AluSx SINE Alu 1 310 -2 2528 93 55 22 chr15 36919023 36919280 -64461241 - MER51B LTR ERV1 -102 275 1 880 141 6 113 chr15 36919282 36919459 -64461062 - MER51-int LTR ERV1 -1 7815 7658 666 254 27 27 chr15 36919459 36919683 -64460838 - AluSg/x SINE Alu -17 293 70 243 248 20 40 chr15 36920125 36920226 -64460295 - LTR54B LTR ERV1 -396 102 4 2866 116 55 38 chr15 36920226 36920557 -64459964 - MER41-int LTR ERV1 -655 6882 6539 2154 125 0 7 chr15 36920557 36920860 -64459661 - AluSg SINE Alu -9 301 1 2866 116 55 38 chr15 36920860 36921002 -64459519 - MER41-int LTR ERV1 -998 6539 6401 1178 154 13 53 chr15 36921005 36921232 -64459289 + AluSp SINE Alu 1 218 -95 297 155 0 0 chr15 36921275 36921333 -64459188 + (CA)n Simple_repeat Simple_repeat 2 59 0 1027 169 0 6 chr15 36921333 36921516 -64459005 + AluY SINE Alu 128 309 -2 465 145 0 0 chr15 36922105 36922174 -64458347 + AluSp SINE Alu 228 296 -17 3048 125 16 38 chr15 36922174 36922268 -64458253 - MER41-int LTR ERV1 -1128 6409 6314 2194 75 0 0 chr15 36922268 36922535 -64457986 - AluSg SINE Alu -7 303 37 3048 125 16 38 chr15 36922535 36923063 -64457458 - MER41-int LTR ERV1 -1223 6314 5753 1725 129 3 83 chr15 36923071 36923397 -64457124 + AluSx SINE Alu 1 300 -12 319 103 184 92 chr15 36923397 36923484 -64457037 - MER41-int LTR ERV1 -2194 5343 5249 * 2115 110 32 11 chr15 36923483 36923873 -64456648 - MER41-int LTR ERV1 -1710 4553 2211 256 151 23 128 chr15 36923852 36923938 -64456583 - MER41-int LTR ERV1 -3239 1978 1902 * 2095 144 0 0 chr15 36923939 36924238 -64456283 - AluSx SINE Alu -13 299 1 207 0 0 0 chr15 36924311 36924334 -64456187 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 448 265 37 19 chr15 36924351 36924513 -64456008 - L2 LINE L2 -58 3214 3050 2119 101 31 3 chr15 36924954 36925263 -64455258 - AluSx SINE Alu 0 312 1 2215 92 13 29 chr15 36925273 36925587 -64454934 - AluSp SINE Alu -4 309 1 2073 146 55 10 chr15 36925593 36925993 -64454528 - MER41-int LTR ERV1 -2344 4652 2820 * 4842 106 133 2 chr15 36925965 36926792 -64453729 - MER41-int LTR ERV1 -4489 3327 2393 4940 98 6 20 chr15 36926793 36927377 -64453144 + LTR8 LTR ERV1 1 575 -116 2294 91 3 3 chr15 36927377 36927674 -64452847 + AluSg SINE Alu 5 301 -9 4940 98 6 20 chr15 36927674 36927782 -64452739 + LTR8 LTR ERV1 575 683 -8 4515 136 50 31 chr15 36927784 36929131 -64451390 + pTR5 LTR ERV1 741 2437 -1 700 106 139 0 chr15 36929143 36929294 -64451227 - MER41-int LTR ERV1 -5421 2395 2224 * 728 95 135 7 chr15 36929278 36929426 -64451095 - MER41-int LTR ERV1 -5697 2119 1953 1137 106 0 0 chr15 36929448 36929589 -64450932 - AluSg/x SINE Alu -27 283 143 989 186 14 59 chr15 36929703 36929924 -64450597 - AluJo SINE Alu -15 297 87 1491 140 132 4 chr15 36930080 36930330 -64450191 - AluJb SINE Alu -30 282 1 2522 67 0 3 chr15 36930431 36930744 -64449777 + AluSq SINE Alu 1 312 -1 1175 224 24 14 chr15 36931113 36931403 -64449118 - AluSc SINE Alu -2 297 5 22 56 0 0 chr15 36931688 36931724 -64448797 + AT_rich Low_complexity Low_complexity 1 36 0 313 316 64 64 chr15 36931842 36932155 -64448366 + L2 LINE L2 2384 2696 -618 481 162 0 0 chr15 36932171 36932245 -64448276 + AluSp/q SINE Alu 218 291 -22 180 0 0 0 chr15 36932252 36932272 -64448249 + (TA)n Simple_repeat Simple_repeat 1 20 0 248 298 36 12 chr15 36932377 36932461 -64448060 + LTR67 LTR ERVL 428 513 -44 1346 138 152 9 chr15 36932463 36932751 -64447770 + MSTA LTR MaLR 1 335 -91 2184 130 0 0 chr15 36932930 36933229 -64447292 - AluSx SINE Alu -13 299 1 228 65 32 0 chr15 36933229 36933260 -64447261 + MSTA LTR MaLR 324 355 -9 316 280 126 7 chr15 36933554 36933697 -64446824 + L2 LINE L2 3110 3269 -3 2003 132 14 0 chr15 36933717 36934005 -64446516 + AluSx SINE Alu 4 295 -17 319 237 79 72 chr15 36934117 36934386 -64446135 - AluY SINE Alu -61 240 1 313 336 51 14 chr15 36935070 36935284 -64445237 - AluY SINE Alu -79 222 1 1447 171 110 13 chr15 36935286 36935596 -64444925 - L1PA16 LINE L1 -7 6159 5820 2547 67 0 3 chr15 36935727 36936040 -64444481 - AluSx SINE Alu 0 312 1 752 196 20 0 chr15 36936232 36936380 -64444141 - L1ME1 LINE L1 -5 6161 6011 1306 94 19 61 chr15 36936380 36936505 -64444016 - MER41B LTR ERV1 0 635 521 2597 53 0 0 chr15 36936505 36936809 -64443712 + AluY SINE Alu 1 304 -7 1306 94 19 61 chr15 36936809 36936895 -64443626 - MER41B LTR ERV1 -114 521 433 1068 209 21 101 chr15 36936895 36936954 -64443567 - L1M4 LINE L1 -2360 3786 3724 1940 139 14 10 chr15 36936954 36937249 -64443272 + AluJb SINE Alu 1 296 -16 1068 209 21 101 chr15 36937249 36937421 -64443100 - L1M4 LINE L1 -2422 3724 3594 1788 158 7 7 chr15 36937421 36937713 -64442808 - AluJb SINE Alu -20 292 1 1068 209 21 101 chr15 36937713 36937857 -64442664 - L1M4 LINE L1 -2552 3594 3440 977 215 39 8 chr15 36937863 36938119 -64442402 - L1MA4 LINE L1 -6 6294 6031 191 35 0 35 chr15 36938119 36938148 -64442373 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1089 153 6 0 chr15 36938148 36938311 -64442210 - AluSq SINE Alu -30 283 120 1141 154 0 0 chr15 36938311 36938486 -64442035 - AluSg/x SINE Alu -1 309 135 364 149 0 15 chr15 36938496 36938563 -64441958 - AluSq SINE Alu -100 203 138 1746 174 7 3 chr15 36938567 36938861 -64441660 - AluSx SINE Alu -16 296 2 42 48 0 0 chr15 36939182 36939245 -64441276 + AT_rich Low_complexity Low_complexity 1 63 0 1826 123 19 4 chr15 36939932 36940193 -64440328 + AluSx SINE Alu 3 267 -45 47 0 0 0 chr15 36940193 36940240 -64440281 + AT_rich Low_complexity Low_complexity 1 47 0 2545 64 0 0 chr15 36940240 36940538 -64439983 - AluY SINE Alu -13 298 1 1447 171 110 13 chr15 36940540 36940850 -64439671 - L1PA16 LINE L1 -7 6159 5820 2559 67 0 3 chr15 36940985 36941298 -64439223 - AluSx SINE Alu 0 312 1 752 196 20 0 chr15 36941490 36941638 -64438883 - L1ME1 LINE L1 -5 6161 6011 1306 94 19 61 chr15 36941638 36941763 -64438758 - MER41B LTR ERV1 0 635 521 2588 53 0 0 chr15 36941763 36942066 -64438455 + AluY SINE Alu 1 303 -8 1306 94 19 61 chr15 36942066 36942152 -64438369 - MER41B LTR ERV1 -114 521 433 1134 216 22 74 chr15 36942152 36942211 -64438310 - L1M4 LINE L1 -2360 3786 3725 1905 138 14 14 chr15 36942211 36942507 -64438014 + AluJb SINE Alu 1 296 -16 1134 216 22 74 chr15 36942507 36942668 -64437853 - L1M4 LINE L1 -2421 3725 3590 1788 158 7 7 chr15 36942668 36942960 -64437561 - AluJb SINE Alu -20 292 1 1134 216 22 74 chr15 36942960 36943104 -64437417 - L1M4 LINE L1 -2556 3590 3440 977 215 39 8 chr15 36943110 36943366 -64437155 - L1MA4 LINE L1 -6 6294 6031 191 35 0 35 chr15 36943366 36943395 -64437126 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1089 153 6 0 chr15 36943395 36943558 -64436963 - AluSq SINE Alu -30 283 120 1702 127 0 0 chr15 36943558 36943802 -64436719 - AluSg/x SINE Alu 0 312 69 2285 95 24 0 chr15 36943810 36944104 -64436417 - AluSx SINE Alu -11 301 1 2291 116 0 3 chr15 36944147 36944449 -64436072 - AluSx SINE Alu -11 301 1 350 320 26 0 chr15 36944457 36944610 -64435911 - L1M4 LINE L1 -2701 3445 3289 2094 125 0 10 chr15 36944629 36944934 -64435587 - AluSx SINE Alu -10 302 1 1200 172 14 0 chr15 36945017 36945226 -64435295 + AluSp SINE Alu 1 212 -101 214 191 48 0 chr15 36945276 36945318 -64435203 + (TTAAA)n Simple_repeat Simple_repeat 1 44 0 2121 109 3 0 chr15 36946204 36946488 -64434033 - AluSg SINE Alu -20 290 6 2166 148 0 0 chr15 36946557 36946868 -64433653 + AluSx SINE Alu 1 311 -1 254 171 171 49 chr15 36947061 36947143 -64433378 + L1ME LINE L1 5729 5820 -301 686 235 99 0 chr15 36947329 36947491 -64433030 - FRAM SINE Alu -4 172 1 1995 159 7 0 chr15 36947536 36947844 -64432677 + AluSx SINE Alu 1 310 -2 476 103 0 56 chr15 36947844 36947951 -64432570 + (GGAA)n Simple_repeat Simple_repeat 1 101 0 1941 145 0 24 chr15 36947964 36948261 -64432260 + AluSx SINE Alu 1 290 -22 24 32 0 0 chr15 36948315 36948346 -64432175 + AT_rich Low_complexity Low_complexity 1 31 0 1272 104 0 0 chr15 36949412 36949585 -64430936 - AluSg/x SINE Alu -6 306 134 2189 128 0 0 chr15 36949585 36949881 -64430640 - AluSq SINE Alu -17 296 1 2053 134 7 0 chr15 36949881 36950172 -64430349 - AluSx SINE Alu -17 295 2 2417 82 0 0 chr15 36950182 36950474 -64430047 - AluSg SINE Alu -18 292 1 283 61 0 8 chr15 36950574 36950614 -64429907 + AluS SINE Alu 56 89 -213 2296 89 7 13 chr15 36951337 36951640 -64428881 + AluSg SINE Alu 1 301 -9 360 135 0 0 chr15 36951741 36951793 -64428728 + MER66B LTR ERV1 295 346 -140 24 32 0 0 chr15 36951793 36951824 -64428697 + AT_rich Low_complexity Low_complexity 1 31 0 2276 80 3 10 chr15 36952990 36953289 -64427232 - AluY SINE Alu -14 297 1 960 169 7 0 chr15 36953671 36953853 -64426668 - AluJo SINE Alu 0 309 127 1939 145 0 24 chr15 36953857 36954153 -64426368 - AluJb SINE Alu -22 290 2 1262 149 4 55 chr15 36954467 36954534 -64425987 - MER2 DNA MER2_type -7 338 269 2199 123 3 0 chr15 36954534 36954834 -64425687 + AluSx SINE Alu 12 312 0 1262 149 4 55 chr15 36954834 36955001 -64425520 - MER2 DNA MER2_type -76 269 116 269 177 0 0 chr15 36955031 36955093 -64425428 + MER2 DNA MER2_type 98 159 -186 2289 98 0 38 chr15 36955116 36955225 -64425296 - AluSq SINE Alu -9 304 192 2379 82 26 0 chr15 36955225 36955529 -64424992 - AluSp SINE Alu -1 312 1 2289 98 0 38 chr15 36955529 36955735 -64424786 - AluSq SINE Alu -121 192 1 547 167 11 11 chr15 36955764 36955854 -64424667 - MER2 DNA MER2_type -255 90 1 2268 102 3 3 chr15 36956078 36956381 -64424140 + AluSp SINE Alu 1 303 -10 950 178 99 16 chr15 36956441 36956632 -64423889 - MER58C DNA MER1_type -8 207 1 293 226 12 0 chr15 36956643 36956727 -64423794 + C-rich Low_complexity Low_complexity 4 88 0 1628 137 4 4 chr15 36956730 36956979 -64423542 - AluSq SINE Alu -6 307 59 1010 184 6 0 chr15 36957367 36957515 -64423006 + FRAM SINE Alu 1 23 -153 2286 106 3 0 chr15 36957515 36957816 -64422705 - AluSc SINE Alu -6 303 2 1010 184 6 0 chr15 36957816 36957835 -64422686 + FRAM SINE Alu 23 40 0 338 109 0 0 chr15 36958058 36958104 -64422417 + Alu SINE Alu 1 46 -257 1803 106 4 4 chr15 36958104 36958341 -64422180 - AluSx SINE Alu -75 237 1 2043 130 7 3 chr15 36958352 36958653 -64421868 - AluSg SINE Alu -8 302 1 1897 136 3 20 chr15 36958900 36959202 -64421319 + AluJo SINE Alu 2 298 -14 349 287 155 0 chr15 36959221 36959395 -64421126 + MIR SINE MIR 46 246 -16 580 103 0 0 chr15 36959467 36959545 -64420976 + AluJ/FLAM SINE Alu 2 79 -233 2075 92 43 3 chr15 36959916 36960198 -64420323 + AluSc SINE Alu 1 293 -16 1049 178 126 25 chr15 36960941 36961227 -64419294 - MER46C DNA MER2_type -4 334 20 2098 135 0 7 chr15 36961967 36962270 -64418251 - AluSx SINE Alu -11 301 1 876 76 0 34 chr15 36962271 36962390 -64418131 - AluSq/x SINE Alu -177 135 21 2133 116 0 19 chr15 36962639 36962949 -64417572 + AluSc SINE Alu 1 304 -5 2315 97 3 0 chr15 36963825 36964123 -64416398 - AluSp SINE Alu -14 299 1 2489 76 0 0 chr15 36964764 36965068 -64415453 - AluY SINE Alu -7 304 1 1439 226 113 31 chr15 36965107 36965428 -64415093 - L2 LINE L2 -4 3309 3016 2309 72 0 0 chr15 36965428 36965721 -64414800 + AluY SINE Alu 1 293 -18 1439 226 113 31 chr15 36965721 36965945 -64414576 - L2 LINE L2 -297 3016 2714 2005 114 3 10 chr15 36965945 36966244 -64414277 - AluSx SINE Alu -15 297 1 1439 226 113 31 chr15 36966244 36966266 -64414255 - L2 LINE L2 -599 2714 2695 881 65 40 0 chr15 36966285 36966433 -64414088 - AluY SINE Alu 0 306 154 1961 123 3 13 chr15 36966930 36967238 -64413283 - AluSx SINE Alu -7 305 1 1582 46 25 0 chr15 36967279 36967500 -64413021 - AluY SINE Alu 0 306 81 807 211 40 15 chr15 36967551 36967750 -64412771 - L1MB8 LINE L1 -6 6172 5969 1039 136 113 0 chr15 36967752 36967964 -64412557 + AluSq SINE Alu 86 317 0 2214 106 3 0 chr15 36967967 36968269 -64412252 + AluSg SINE Alu 1 303 -7 3283 132 21 67 chr15 36968273 36968418 -64412103 - L1MB8 LINE L1 -254 5924 5774 1856 151 0 7 chr15 36968418 36968709 -64411812 - AluJo SINE Alu -23 289 1 3283 132 21 67 chr15 36968709 36968998 -64411523 - L1MB8 LINE L1 -404 5774 5525 2256 63 0 20 chr15 36968998 36969298 -64411223 - AluY SINE Alu -17 294 1 3283 132 21 67 chr15 36969298 36969491 -64411030 - L1MB8 LINE L1 -653 5525 5325 1609 175 0 14 chr15 36969491 36969788 -64410733 - AluJo SINE Alu -19 293 1 789 167 0 0 chr15 36969789 36969921 -64410600 - AluJo SINE Alu -176 136 5 334 178 14 41 chr15 36969921 36969994 -64410527 - L1MB8 LINE L1 -848 5336 5266 1364 147 12 126 chr15 36970055 36970412 -64410109 + AluJb SINE Alu 1 302 0 1343 152 56 24 chr15 36970806 36971056 -64409465 - AluJb SINE Alu -54 258 1 1766 124 16 46 chr15 36971251 36971557 -64408964 + AluSq SINE Alu 1 297 -16 1203 200 52 30 chr15 36972021 36972326 -64408195 - AluJo SINE Alu 0 312 1 1981 107 11 0 chr15 36972688 36972997 -64407524 - AluSx SINE Alu 0 312 1 739 157 0 50 chr15 36973079 36973219 -64407302 - FLAM_C SINE Alu 0 133 1 1926 131 0 0 chr15 36973429 36973712 -64406809 - AluSx SINE Alu -2 310 28 2066 107 13 13 chr15 36973899 36974208 -64406313 - AluSp SINE Alu -4 309 1 2093 92 3 0 chr15 36974219 36974501 -64406020 - AluSg SINE Alu -22 288 6 1066 152 0 0 chr15 36975279 36975450 -64405071 + AluSg/x SINE Alu 136 306 -6 368 256 23 52 chr15 36975519 36975568 -64404953 - HAL1 LINE L1 -116 2391 2342 2013 119 7 19 chr15 36975568 36975878 -64404643 - AluSx SINE Alu -6 306 1 368 256 23 52 chr15 36975878 36976000 -64404521 - HAL1 LINE L1 -165 2342 2225 845 120 8 0 chr15 36976061 36976186 -64404335 + AluSg/x SINE Alu 174 299 -11 355 235 104 0 chr15 36976192 36976307 -64404214 - HAL1 LINE L1 -351 2156 2030 246 207 0 0 chr15 36976308 36976366 -64404155 + CT-rich Low_complexity Low_complexity 3 60 0 260 62 0 0 chr15 36976368 36976400 -64404121 - AluJb SINE Alu -14 288 257 962 173 6 6 chr15 36976402 36976570 -64403951 - AluJb SINE Alu -144 168 1 315 214 43 0 chr15 36976758 36976828 -64403693 - HAL1 LINE L1 -590 1917 1845 2614 137 33 5 chr15 36976840 36977264 -64403257 - MER39B LTR ERV1 0 653 218 278 154 0 31 chr15 36977265 36977330 -64403191 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 854 144 25 56 chr15 36977333 36977493 -64403028 - AluJo/FRAM SINE Alu -24 288 134 2120 118 0 0 chr15 36977493 36977797 -64402724 - AluSx SINE Alu -8 304 1 2170 96 3 10 chr15 36977799 36978102 -64402419 - AluSx SINE Alu -11 301 1 2141 123 0 0 chr15 36978121 36978431 -64402090 - AluSx SINE Alu -2 310 1 1294 133 19 19 chr15 36978431 36978641 -64401880 - MER39B LTR ERV1 -443 210 1 272 275 120 54 chr15 36978643 36978914 -64401607 - HAL1 LINE L1 -1913 594 272 23 0 0 0 chr15 36978981 36979004 -64401517 + AT_rich Low_complexity Low_complexity 1 23 0 1099 151 0 0 chr15 36979130 36979302 -64401219 - AluSg/x SINE Alu -14 298 127 1367 174 40 22 chr15 36979302 36979577 -64400944 + AluJo SINE Alu 6 285 -27 231 33 0 0 chr15 36979577 36979588 -64400933 + (TA)n Simple_repeat Simple_repeat 1 11 -19 2047 123 0 7 chr15 36979588 36979897 -64400624 + AluSx SINE Alu 2 308 -4 231 33 0 0 chr15 36979897 36979915 -64400606 + (TA)n Simple_repeat Simple_repeat 10 30 0 752 162 7 22 chr15 36980057 36980193 -64400328 - AluJo SINE Alu -177 135 2 2186 109 0 0 chr15 36980276 36980578 -64399943 + AluSg SINE Alu 1 302 -8 2006 155 27 57 chr15 36980832 36980890 -64399631 - MER21B LTR ERV1 -1 862 804 2190 102 3 0 chr15 36980890 36981184 -64399337 + AluSx SINE Alu 1 295 -17 2006 155 27 57 chr15 36981184 36981526 -64398995 - MER21B LTR ERV1 -59 804 474 1890 138 0 10 chr15 36981534 36981823 -64398698 - AluSx SINE Alu -26 286 1 785 162 0 52 chr15 36981856 36982010 -64398511 + AluJb SINE Alu 3 148 -164 988 122 32 0 chr15 36982117 36982273 -64398248 + AluSc SINE Alu 135 295 -14 216 100 0 25 chr15 36982316 36982356 -64398165 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 306 200 50 0 chr15 36982631 36982691 -64397830 + MIR SINE MIR 129 191 -71 1189 233 20 0 chr15 36983075 36983324 -64397197 + MIR SINE MIR 8 261 -1 374 287 46 0 chr15 36983331 36983418 -64397103 - L2 LINE L2 -19 3253 3163 1898 151 13 0 chr15 36983689 36983993 -64396528 + AluJb SINE Alu 1 308 -4 278 193 246 0 chr15 36984060 36984174 -64396347 - MLT1L LTR MaLR -52 563 422 1696 169 6 22 chr15 36984527 36984841 -64395680 - AluJb SINE Alu -3 309 1 2291 96 3 10 chr15 36985176 36985490 -64395031 + AluSx SINE Alu 1 312 0 2150 103 3 3 chr15 36985524 36985825 -64394696 + AluSq SINE Alu 1 301 -12 2097 105 3 0 chr15 36986097 36986408 -64394113 + AluSq SINE Alu 1 312 0 2456 143 22 33 chr15 36986685 36986815 -64393706 + L1MB3 LINE L1 5701 5831 -352 2171 112 0 0 chr15 36986815 36987111 -64393410 + AluSg SINE Alu 1 296 -14 2456 143 22 33 chr15 36987111 36987468 -64393053 + L1MB3 LINE L1 5831 6183 0 2158 128 0 0 chr15 36987475 36987780 -64392741 + AluSx SINE Alu 1 305 -7 1025 169 14 29 chr15 36987831 36988038 -64392483 + AluJb SINE Alu 87 290 -22 866 138 0 36 chr15 36988049 36988187 -64392334 + AluJo/FLAM SINE Alu 1 133 -169 2106 96 0 17 chr15 36988190 36988491 -64392030 + AluSg SINE Alu 1 296 -14 525 200 30 0 chr15 36988509 36988609 -64391912 - FLAM_A SINE Alu -19 123 21 1745 70 9 0 chr15 36988621 36988848 -64391673 - AluSq SINE Alu -84 229 1 229 354 97 9 chr15 36988849 36988962 -64391559 + L2 LINE L2 3191 3313 0 1454 186 13 43 chr15 36989287 36989588 -64390933 + AluJb SINE Alu 1 292 -20 268 268 108 57 chr15 36989628 36989822 -64390699 + MLT1J LTR MaLR 239 442 -69 2033 115 0 0 chr15 36989924 36990211 -64390310 + AluSq SINE Alu 12 298 -15 1677 150 11 18 chr15 36990211 36990531 -64389990 + AluSx SINE Alu 1 318 0 2288 75 0 0 chr15 36990581 36990873 -64389648 + AluY SINE Alu 1 292 -19 2105 84 10 29 chr15 36991998 36992306 -64388215 + AluSx SINE Alu 1 302 -10 2146 121 0 0 chr15 36992380 36992685 -64387836 + AluSq SINE Alu 3 307 -6 374 278 21 0 chr15 36993026 36993123 -64387398 - MIR SINE MIR -118 144 46 699 105 0 9 chr15 36993313 36993418 -64387103 - AluSc SINE Alu -14 295 192 1750 92 62 45 chr15 36993808 36994100 -64386421 + AluSx SINE Alu 1 297 -15 1971 105 7 3 chr15 36994100 36994412 -64386109 + AluSp SINE Alu 1 313 0 2306 70 3 0 chr15 36994695 36994995 -64385526 - AluSx SINE Alu -11 301 1 180 111 0 0 chr15 36995917 36995944 -64384577 + (TTCC)n Simple_repeat Simple_repeat 4 30 0 2229 96 0 0 chr15 36996820 36997121 -64383400 - AluSx SINE Alu -10 302 2 299 367 51 17 chr15 36997498 36997675 -64382846 - L3 LINE CR1 -12 1565 1383 182 356 27 27 chr15 36998173 36998246 -64382275 - L2 LINE L2 -12 3260 3188 1605 179 0 28 chr15 36998549 36998868 -64381653 - AluJo SINE Alu -2 310 1 586 228 72 24 chr15 36999240 36999407 -64381114 + MIR SINE MIR 85 259 -3 1761 133 23 26 chr15 36999848 37000156 -64380365 + AluJb SINE Alu 1 307 -5 1050 159 6 6 chr15 37000694 37000857 -64379664 - FRAM SINE Alu -3 163 1 1899 153 0 0 chr15 37000867 37001167 -64379354 - AluJb SINE Alu -3 309 10 319 235 49 86 chr15 37001284 37001446 -64379075 - L1MC4 LINE L1 -138 7904 7749 2051 121 0 0 chr15 37001447 37001744 -64378777 - AluSq SINE Alu -16 297 1 2197 109 0 3 chr15 37001747 37002060 -64378461 - AluSx SINE Alu 0 312 1 1657 160 0 20 chr15 37002273 37002566 -64377955 + AluSx SINE Alu 3 289 -23 517 59 39 65 chr15 37002566 37002925 -64377596 + (TA)n Simple_repeat Simple_repeat 1 349 0 212 100 80 0 chr15 37002949 37002999 -64377522 + (TA)n Simple_repeat Simple_repeat 2 55 0 608 184 191 7 chr15 37003002 37003138 -64377383 - MER21B LTR ERV1 -400 463 303 709 199 0 15 chr15 37003180 37003311 -64377210 + FLAM_C SINE Alu 1 129 -4 1923 116 42 0 chr15 37003316 37003600 -64376921 + AluSx SINE Alu 1 296 -16 1425 131 143 12 chr15 37003600 37003859 -64376662 + AluSg1 SINE Alu 1 293 -16 24 0 0 0 chr15 37003859 37003883 -64376638 + AT_rich Low_complexity Low_complexity 1 24 0 1513 174 11 4 chr15 37003884 37004159 -64376362 - AluJb SINE Alu -35 277 1 1798 170 0 43 chr15 37004161 37004485 -64376036 - MER21B LTR ERV1 -547 316 7 995 146 0 0 chr15 37004513 37004671 -64375850 - AluSp/q SINE Alu 0 313 156 1643 78 91 8 chr15 37004672 37004915 -64375606 + AluSq SINE Alu 31 293 -20 2102 93 19 26 chr15 37005039 37005350 -64375171 + AluY SINE Alu 1 309 -2 1651 173 3 0 chr15 37005447 37005736 -64374785 + AluJb SINE Alu 5 294 -18 690 115 0 0 chr15 37005738 37005834 -64374687 + AluSq/x SINE Alu 38 133 -180 1771 133 14 0 chr15 37005837 37005966 -64374555 + AluSx SINE Alu 1 127 -175 2170 83 0 7 chr15 37005966 37006255 -64374266 + AluSc SINE Alu 15 301 -8 1771 133 14 0 chr15 37006255 37006423 -64374098 + AluSx SINE Alu 127 302 0 23 0 0 0 chr15 37006881 37006904 -64373617 + AT_rich Low_complexity Low_complexity 1 23 0 467 243 0 0 chr15 37007325 37007428 -64373093 - FLAM_A SINE Alu -5 137 35 2314 148 61 63 chr15 37007913 37008257 -64372264 - MLT1D LTR MaLR 0 505 161 2366 87 0 0 chr15 37008257 37008568 -64371953 + AluY SINE Alu 1 311 0 2314 148 61 63 chr15 37008568 37008729 -64371792 - MLT1D LTR MaLR -344 161 1 29 0 0 0 chr15 37008734 37008763 -64371758 + AT_rich Low_complexity Low_complexity 1 29 0 1682 163 0 23 chr15 37008810 37009111 -64371410 - AluJo SINE Alu -18 294 1 546 211 9 0 chr15 37009113 37009222 -64371299 - FLAM_A SINE Alu -12 130 21 1734 154 6 41 chr15 37009356 37009485 -64371036 + AluJo SINE Alu 6 138 -174 2279 44 41 3 chr15 37009485 37009778 -64370743 + AluY SINE Alu 1 304 -7 1734 154 6 41 chr15 37009778 37009966 -64370555 + AluJo SINE Alu 138 312 0 1930 127 7 7 chr15 37009973 37010273 -64370248 + AluSc SINE Alu 3 302 -7 1730 188 0 6 chr15 37010300 37010614 -64369907 + 7SLRNA srpRNA srpRNA 1 312 -8 1206 110 0 0 chr15 37010618 37010782 -64369739 + AluSg/x SINE Alu 130 293 -19 1995 93 7 47 chr15 37011340 37011670 -64368851 + AluSx SINE Alu 1 318 0 2279 88 0 25 chr15 37012052 37012369 -64368152 - AluSc SINE Alu 0 309 1 1772 128 14 14 chr15 37012858 37013181 -64367340 - AluSx SINE Alu 0 323 1 521 286 24 9 chr15 37013190 37013400 -64367121 - AluSq SINE Alu -25 288 76 1937 98 79 0 chr15 37014133 37014410 -64366111 - AluSc SINE Alu -10 299 1 29 0 0 0 chr15 37014480 37014509 -64366012 + AT_rich Low_complexity Low_complexity 1 29 0 504 234 0 0 chr15 37014509 37014616 -64365905 - AluJb SINE Alu -205 107 1 21 0 0 0 chr15 37014660 37014681 -64365840 + AT_rich Low_complexity Low_complexity 1 21 0 2223 103 3 0 chr15 37014794 37015096 -64365425 + AluSp SINE Alu 1 303 -10 2057 116 0 0 chr15 37015180 37015473 -64365048 - AluSc SINE Alu -16 293 1 248 308 55 0 chr15 37015688 37015779 -64364742 - MIR SINE MIR -1 261 166 977 131 0 7 chr15 37016805 37016942 -64363579 + AluSg/x SINE Alu 145 280 -30 180 0 0 0 chr15 37016945 37016965 -64363556 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2408 103 3 0 chr15 37016984 37017295 -64363226 + AluSq SINE Alu 1 312 -1 804 108 0 0 chr15 37017380 37017482 -64363039 + AluS SINE Alu 1 102 -211 2243 95 7 0 chr15 37018072 37018366 -64362155 + AluSg SINE Alu 1 296 -14 1059 190 68 0 chr15 37018661 37018866 -64361655 + MER20 DNA MER1_type 1 219 0 1766 168 71 69 chr15 37019157 37019331 -64361190 - L1MB7 LINE L1 -135 6049 5877 2080 99 0 64 chr15 37019331 37019644 -64360877 + AluSx SINE Alu 1 293 -19 1766 168 71 69 chr15 37019644 37019903 -64360618 - L1MB7 LINE L1 -307 5877 5615 1461 207 6 9 chr15 37019899 37020218 -64360303 - L1MB7 LINE L1 -935 5211 4894 * 2256 99 6 22 chr15 37020456 37020770 -64359751 - AluSq SINE Alu -4 309 1 311 182 65 0 chr15 37020785 37020862 -64359659 - FLAM_A SINE Alu 0 133 52 1379 88 88 10 chr15 37020862 37021056 -64359465 + AluY SINE Alu 87 295 -16 771 128 40 0 chr15 37021058 37021183 -64359338 + FLAM_C SINE Alu 3 132 -1 1905 157 3 13 chr15 37021236 37021536 -64358985 + AluSx SINE Alu 1 297 -15 1332 81 0 0 chr15 37021678 37021885 -64358636 + AluY SINE Alu 121 327 0 255 324 0 0 chr15 37021951 37022019 -64358502 - L2 LINE L2 -2 3311 3244 1045 188 0 11 chr15 37022019 37022200 -64358321 - AluJb SINE Alu -14 298 120 771 199 0 0 chr15 37022294 37022435 -64358086 - FLAM_C SINE Alu -1 142 2 902 129 0 8 chr15 37022501 37022633 -64357888 + AluJb SINE Alu 1 131 -181 1572 161 97 4 chr15 37023045 37023324 -64357197 - AluJo SINE Alu -7 305 1 2530 84 0 0 chr15 37023333 37023642 -64356879 - AluY SINE Alu -2 309 1 21 0 0 0 chr15 37023699 37023720 -64356801 + AT_rich Low_complexity Low_complexity 1 21 0 1085 67 7 0 chr15 37023998 37024133 -64356388 - AluSg SINE Alu -170 140 5 1702 176 0 18 chr15 37024140 37024419 -64356102 - AluJo SINE Alu -21 291 18 2131 124 0 19 chr15 37024522 37024829 -64355692 + AluSx SINE Alu 1 301 -11 239 289 106 14 chr15 37025237 37025379 -64355142 + HAL1 LINE L1 1283 1437 -1070 2197 115 3 16 chr15 37025388 37025700 -64354821 - AluSc SINE Alu -1 308 1 782 167 88 49 chr15 37025723 37025927 -64354594 - L1ME3A LINE L1 -10 6160 5949 2112 156 15 9 chr15 37026031 37026364 -64354157 + MER1B DNA MER1_type 3 337 0 317 59 0 39 chr15 37026375 37026426 -64354095 - FLAM_A SINE Alu 0 133 85 1260 141 22 0 chr15 37026426 37026610 -64353911 - AluSp SINE Alu -125 188 1 2291 88 17 0 chr15 37026739 37027035 -64353486 - AluSg1 SINE Alu -8 301 1 2619 68 0 0 chr15 37027496 37027805 -64352716 - AluSc SINE Alu 0 309 1 2261 82 4 0 chr15 37027993 37028323 -64352198 - AluY SINE Alu 0 331 1 1721 179 3 28 chr15 37028344 37028662 -64351859 - AluJo SINE Alu -2 310 1 799 189 118 43 chr15 37029500 37029889 -64350632 - L1MC4 LINE L1 0 8042 7533 240 87 152 0 chr15 37030039 37030085 -64350436 + AluSp/q SINE Alu 251 303 0 2160 102 0 17 chr15 37030126 37030421 -64350100 + AluSx SINE Alu 1 290 -22 472 265 143 16 chr15 37030455 37030644 -64349877 + MIR SINE MIR 20 232 -30 369 189 2 116 chr15 37031634 37031770 -64348751 - L1MC4 LINE L1 -1 8040 7889 597 122 128 13 chr15 37031792 37031948 -64348573 - Charlie5 DNA MER1_type -36 2576 2403 1031 101 7 7 chr15 37031950 37032099 -64348422 - AluSg/x SINE Alu -6 304 156 402 165 94 0 chr15 37032228 37032313 -64348208 + FRAM SINE Alu 74 166 0 778 253 87 29 chr15 37032361 37032638 -64347883 - L2 LINE L2 -5 3308 3016 1533 135 20 141 chr15 37032642 37032732 -64347789 + AluJo SINE Alu 3 102 -200 2280 90 10 3 chr15 37032732 37033021 -64347500 + AluSc SINE Alu 3 293 -16 2225 72 0 60 chr15 37033025 37033343 -64347178 + AluY SINE Alu 1 299 -12 1533 135 20 141 chr15 37033343 37033588 -64346933 + AluJo SINE Alu 105 302 0 183 331 113 26 chr15 37033800 37033951 -64346570 + L2 LINE L2 2932 3095 -177 197 310 0 0 chr15 37035050 37035108 -64345413 - L2 LINE L2 0 3272 3215 2180 118 0 31 chr15 37035197 37035339 -64345182 + AluSq SINE Alu 1 146 -167 2578 66 0 0 chr15 37035339 37035644 -64344877 + AluY SINE Alu 1 305 -6 2180 118 0 31 chr15 37035644 37035824 -64344697 + AluSq SINE Alu 146 313 0 570 68 0 0 chr15 37036318 37036391 -64344130 - AluS SINE Alu -239 74 2 340 203 152 0 chr15 37036431 37036510 -64344011 + L1MA10 LINE L1 6184 6274 -60 207 0 0 0 chr15 37036511 37036534 -64343987 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1017 108 0 0 chr15 37036534 37036663 -64343858 - AluSq/x SINE Alu -184 129 1 251 222 0 0 chr15 37036665 37036728 -64343793 + L1MA10 LINE L1 6266 6328 -6 465 199 0 117 chr15 37036733 37036778 -64343743 + L1M4 LINE L1 3622 3671 -2475 1989 156 10 0 chr15 37036778 37037086 -64343435 - AluSx SINE Alu -1 311 1 465 199 0 117 chr15 37037086 37037132 -64343389 + L1M4 LINE L1 3671 3721 -2425 2319 69 0 31 chr15 37037132 37037447 -64343074 + AluY SINE Alu 1 306 0 465 199 0 117 chr15 37037447 37037524 -64342997 + L1M4 LINE L1 3721 3772 -2374 507 261 43 27 chr15 37037544 37037732 -64342789 + L1M4 LINE L1 3757 3947 -2199 1408 129 5 0 chr15 37037736 37037945 -64342576 - AluSg/x SINE Alu -1 309 100 1027 149 0 0 chr15 37038201 37038349 -64342172 + AluSg/x SINE Alu 137 284 -28 2441 87 0 0 chr15 37038365 37038665 -64341856 - AluSg SINE Alu -10 300 1 193 229 184 18 chr15 37038691 37038800 -64341721 + MIR3 SINE MIR 2 128 -80 565 187 22 93 chr15 37038832 37038971 -64341550 - FLAM_A SINE Alu -3 130 2 2240 107 3 0 chr15 37039193 37039492 -64341029 - AluSg SINE Alu -8 302 3 2170 125 10 0 chr15 37039558 37039861 -64340660 - AluSq SINE Alu -7 306 1 821 204 0 7 chr15 37039992 37040144 -64340377 - FAM SINE Alu -34 151 1 1877 152 0 10 chr15 37040436 37040738 -64339783 + AluSx SINE Alu 1 299 -13 378 267 118 33 chr15 37041255 37041563 -64338958 - MLT1J LTR MaLR -33 582 154 1962 127 0 119 chr15 37041613 37041842 -64338679 - MER7A DNA MER2_type -2707 331 76 1552 167 3 54 chr15 37041842 37041988 -64338533 + AluJo SINE Alu 1 124 -188 2356 90 7 0 chr15 37041988 37042288 -64338233 + AluSq SINE Alu 1 302 -11 1552 167 3 54 chr15 37042288 37042458 -64338063 + AluJo SINE Alu 124 301 -11 1962 127 0 119 chr15 37042458 37042521 -64338000 - MER7A DNA MER2_type -2962 76 92 2470 76 0 16 chr15 37042527 37042841 -64337680 + AluY SINE Alu 1 309 -2 1281 129 32 5 chr15 37042841 37043051 -64337470 - L1PA13 LINE L1 -6 6157 5939 1962 127 0 119 chr15 37043051 37043135 -64337386 - MER7A DNA MER2_type -2945 93 1 2417 81 3 0 chr15 37043411 37043707 -64336814 + AluSg SINE Alu 1 297 -13 2522 69 10 3 chr15 37044987 37045292 -64335229 - AluSg SINE Alu -3 307 1 2314 106 0 0 chr15 37045347 37045640 -64334881 - AluSx SINE Alu -19 293 1 180 77 0 0 chr15 37045981 37046007 -64334514 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 445 213 70 48 chr15 37046368 37046576 -64333945 - L1MC4 LINE L1 -248 7560 7426 21 0 0 0 chr15 37047484 37047505 -64333016 + AT_rich Low_complexity Low_complexity 1 21 0 1905 112 84 3 chr15 37047797 37048083 -64332438 - AluSx SINE Alu -3 309 1 2245 117 3 0 chr15 37048448 37048747 -64331774 - AluSx SINE Alu -12 300 1 778 179 7 14 chr15 37048956 37049101 -64331420 - AluSg/x SINE Alu -32 278 135 240 35 0 0 chr15 37049101 37049130 -64331391 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 310 97 0 48 chr15 37049140 37049202 -64331319 + (TTTCC)n Simple_repeat Simple_repeat 1 59 0 1720 122 12 8 chr15 37049203 37049458 -64331063 - AluSx SINE Alu -6 306 51 239 69 0 0 chr15 37049558 37049587 -64330934 - Alu SINE Alu -262 37 9 1673 89 0 14 chr15 37049588 37049801 -64330720 - AluSx SINE Alu -102 210 1 547 167 11 11 chr15 37049830 37049920 -64330601 - MER2 DNA MER2_type -255 90 1 2026 125 3 10 chr15 37050144 37050448 -64330073 + AluSp SINE Alu 1 302 -11 703 233 90 11 chr15 37050510 37050699 -64329822 - MER58C DNA MER1_type -8 207 4 567 138 0 0 chr15 37051500 37051580 -64328941 - AluS SINE Alu -231 82 3 1861 153 0 0 chr15 37051584 37051866 -64328655 - AluSx SINE Alu -18 294 13 1853 104 0 4 chr15 37051923 37052172 -64328349 + AluSx SINE Alu 64 311 -1 2114 131 7 0 chr15 37052272 37052577 -64327944 + AluSq SINE Alu 1 307 -6 293 226 12 0 chr15 37052580 37052664 -64327857 + G-rich Low_complexity Low_complexity 4 88 0 924 183 99 16 chr15 37052675 37052866 -64327655 + MER58C DNA MER1_type 1 207 -8 2298 98 3 3 chr15 37052926 37053231 -64327290 - AluSp SINE Alu -8 305 1 547 167 11 11 chr15 37053455 37053545 -64326976 + MER2 DNA MER2_type 1 90 -255 2289 98 0 38 chr15 37053574 37053780 -64326741 + AluSq SINE Alu 1 192 -121 2409 79 26 0 chr15 37053780 37054084 -64326437 + AluSp SINE Alu 1 312 -1 2289 98 0 38 chr15 37054084 37054193 -64326328 + AluSq SINE Alu 192 304 -9 269 177 0 0 chr15 37054216 37054278 -64326243 - MER2 DNA MER2_type -186 159 98 1292 154 18 9 chr15 37054308 37054461 -64326060 + MER2 DNA MER2_type 116 273 -72 2180 123 3 7 chr15 37054461 37054763 -64325758 - AluSx SINE Alu 0 312 12 1292 154 18 9 chr15 37054763 37054830 -64325691 + MER2 DNA MER2_type 273 338 -7 1939 145 0 24 chr15 37055144 37055440 -64325081 + AluJb SINE Alu 2 290 -22 954 181 0 0 chr15 37055444 37055627 -64324894 + AluJo SINE Alu 127 309 0 2415 74 0 7 chr15 37056009 37056306 -64324215 + AluY SINE Alu 1 295 -16 24 32 0 0 chr15 37057472 37057503 -64323018 + AT_rich Low_complexity Low_complexity 1 31 0 360 135 0 0 chr15 37057503 37057555 -64322966 - MER66A LTR ERV1 -140 338 287 2296 75 30 3 chr15 37057656 37057951 -64322570 - AluSx SINE Alu -9 303 1 1309 173 112 61 chr15 37058089 37058517 -64322004 - LTR7 LTR ERV1 0 450 1 2383 99 0 0 chr15 37058770 37059072 -64321449 + AluSx SINE Alu 3 304 -8 2010 92 73 9 chr15 37060732 37061098 -64319423 - LTR7 LTR ERV1 0 450 1 235 227 62 62 chr15 37061134 37061231 -64319290 + Charlie4 DNA MER1_type 1865 1961 0 2076 108 3 26 chr15 37061795 37062102 -64318419 + AluSx SINE Alu 1 300 -12 2278 221 84 31 chr15 37062123 37062531 -64317990 - L1MA9 LINE L1 -30 6282 5824 1678 123 70 66 chr15 37062531 37062832 -64317689 - AluSx SINE Alu -10 302 1 2278 221 84 31 chr15 37062832 37063089 -64317432 - L1MA9 LINE L1 -488 5824 5582 1129 115 0 6 chr15 37063090 37063247 -64317274 + AluSg/x SINE Alu 136 291 -21 355 187 0 13 chr15 37063247 37063322 -64317199 - L1MA9 LINE L1 -717 5586 5513 2300 96 7 0 chr15 37063357 37063648 -64316873 - AluSq SINE Alu -20 293 1 1250 173 82 61 chr15 37063714 37064132 -64316389 - MLT1C LTR MaLR -1 389 1 706 172 17 0 chr15 37064203 37064319 -64316202 + FAM SINE Alu 23 140 -45 1191 171 26 8 chr15 37064319 37064553 -64315968 + L1MB3 LINE L1 5943 6180 -3 223 140 0 35 chr15 37064577 37064634 -64315887 + (TA)n Simple_repeat Simple_repeat 2 56 0 1837 158 38 0 chr15 37064794 37065085 -64315436 + AluSq SINE Alu 1 302 -11 486 0 0 0 chr15 37065085 37065139 -64315382 + (TA)n Simple_repeat Simple_repeat 2 55 0 396 212 71 0 chr15 37065200 37065285 -64315236 + L1MC4a LINE L1 5833 5923 -1885 1848 143 31 0 chr15 37065537 37065830 -64314691 - AluSq SINE Alu -9 304 3 1014 125 65 12 chr15 37065834 37066002 -64314519 - AluSg/x SINE Alu -1 311 135 1186 246 163 18 chr15 37066174 37066318 -64314203 - MLT1F LTR MaLR 0 542 420 2322 84 0 10 chr15 37066318 37066614 -64313907 + AluY SINE Alu 1 293 -18 1186 246 163 18 chr15 37066614 37066856 -64313665 - MLT1F LTR MaLR -122 420 100 2218 101 14 0 chr15 37066889 37067186 -64313335 - AluY SINE Alu -10 301 1 420 235 53 88 chr15 37067190 37067360 -64313161 - MER21B LTR ERV1 -149 714 551 672 205 107 49 chr15 37067364 37067434 -64313087 - L1 LINE L1 -3032 3114 3049 720 136 0 0 chr15 37067434 37067537 -64312984 - AluSg/x SINE Alu -12 300 198 2047 138 0 0 chr15 37067436 37067734 -64312787 - AluSx SINE Alu -14 298 1 672 205 107 49 chr15 37067537 37067737 -64312784 - L1 LINE L1 -3097 3049 3013 989 178 0 0 chr15 37067737 37067900 -64312621 - FAM SINE Alu -12 163 1 672 205 107 49 chr15 37067900 37068067 -64312454 - L1 LINE L1 -3133 3013 2857 572 192 0 10 chr15 37068149 37068253 -64312268 - MLT1F LTR MaLR -439 103 1 1650 277 0 64 chr15 37068300 37068628 -64311893 - AluSp SINE Alu -6 307 1 240 191 0 0 chr15 37068831 37068873 -64311648 + Alu SINE Alu 2 43 -257 284 167 0 0 chr15 37068974 37069016 -64311505 + Alu SINE Alu 247 288 -12 1977 151 0 0 chr15 37069102 37069407 -64311114 - AluSx SINE Alu -3 309 5 1056 254 120 44 chr15 37069412 37069925 -64310596 - L2 LINE L2 -8 3305 2763 1529 182 17 7 chr15 37069950 37070241 -64310280 - AluJo SINE Alu -16 296 3 1949 100 0 7 chr15 37070465 37070746 -64309775 - AluSg SINE Alu -31 279 1 628 116 0 74 chr15 37070756 37070877 -64309644 - AluSc SINE Alu -1 308 197 1091 180 109 8 chr15 37071223 37071521 -64309000 - L1MB4 LINE L1 -3 6177 5852 1859 114 10 17 chr15 37071555 37071844 -64308677 - AluSq SINE Alu -26 287 1 1840 128 10 13 chr15 37072084 37072388 -64308133 - AluJo SINE Alu -9 303 1 2143 131 0 0 chr15 37072413 37072725 -64307796 + AluSx SINE Alu 1 312 0 1890 136 0 0 chr15 37072893 37073200 -64307321 - AluSg SINE Alu 0 307 1 2105 117 3 0 chr15 37073864 37074162 -64306359 + AluSx SINE Alu 1 299 -13 887 119 33 7 chr15 37074367 37074541 -64305980 - AluSg/x SINE Alu 0 308 131 26 50 0 0 chr15 37075077 37075117 -64305404 + AT_rich Low_complexity Low_complexity 1 40 0 195 42 0 0 chr15 37075765 37075789 -64304732 + (TA)n Simple_repeat Simple_repeat 2 25 0 1640 130 0 0 chr15 37076241 37076471 -64304050 - AluSx SINE Alu -30 282 53 252 0 0 0 chr15 37077223 37077251 -64303270 + (A)n Simple_repeat Simple_repeat 1 28 0 2049 123 3 10 chr15 37077465 37077774 -64302747 + AluSc SINE Alu 1 307 -2 616 245 108 29 chr15 37080755 37080996 -64299525 - MIR SINE MIR -2 260 1 231 37 0 0 chr15 37081141 37081188 -64299333 - Alu SINE Alu 0 308 262 2114 102 7 0 chr15 37081226 37081520 -64299001 - AluSg SINE Alu -14 296 1 1067 193 107 59 chr15 37081630 37081900 -64298621 + AluJb SINE Alu 1 283 -19 1776 122 27 14 chr15 37081929 37082225 -64298296 + AluSx SINE Alu 1 300 -12 221 350 88 15 chr15 37082298 37082435 -64298086 + L2 LINE L2 2598 2744 -570 251 294 82 78 chr15 37082475 37082621 -64297900 + L2 LINE L2 3005 3149 -164 2013 120 7 0 chr15 37082621 37082913 -64297608 - AluSx SINE Alu -18 294 1 251 294 82 78 chr15 37082913 37083059 -64297462 + L2 LINE L2 3149 3298 -15 1237 161 124 22 chr15 37083799 37084072 -64296449 - AluJo SINE Alu -6 306 6 2265 76 3 13 chr15 37084261 37084563 -64295958 + AluY SINE Alu 1 299 -12 296 333 0 0 chr15 37084876 37084951 -64295570 - L1M4b LINE L1 -6260 599 525 278 135 62 10 chr15 37084951 37085015 -64295506 + AluSc SINE Alu 162 207 -92 1172 132 24 141 chr15 37085017 37085350 -64295171 + AluYb8 SINE Alu 16 309 -9 372 235 185 0 chr15 37085350 37085469 -64295052 - L1M4b LINE L1 -6708 151 11 1790 124 28 21 chr15 37085499 37085782 -64294739 - AluSg SINE Alu -25 285 1 1900 104 71 0 chr15 37085790 37086070 -64294451 - AluSp SINE Alu -13 300 1 2123 121 3 0 chr15 37086070 37086375 -64294146 - AluSp SINE Alu -5 308 3 1188 89 0 0 chr15 37086385 37086543 -64293978 - AluSg/x SINE Alu -21 289 132 2214 90 3 0 chr15 37086544 37086844 -64293677 - AluY SINE Alu -10 301 1 1359 150 37 129 chr15 37087409 37087788 -64292733 - MER2 DNA MER2_type 0 344 1 2235 76 10 0 chr15 37088025 37088315 -64292206 - AluSx SINE Alu -19 293 1 778 122 0 116 chr15 37088440 37088552 -64291969 + AluJo SINE Alu 5 98 -214 2153 118 0 0 chr15 37088552 37088848 -64291673 - AluSx SINE Alu -16 296 1 778 122 0 116 chr15 37088848 37088882 -64291639 + AluJo SINE Alu 98 134 -178 2019 125 3 0 chr15 37088994 37089291 -64291230 + AluSx SINE Alu 1 298 -14 1967 67 60 25 chr15 37089714 37089998 -64290523 + AluY SINE Alu 6 299 -12 859 194 0 18 chr15 37090001 37090171 -64290350 + AluSg/x SINE Alu 129 295 -17 2340 79 0 3 chr15 37090354 37090657 -64289864 + AluY SINE Alu 1 302 -9 2256 86 3 10 chr15 37091222 37091525 -64288996 - AluSc SINE Alu -7 302 2 1596 196 3 3 chr15 37091529 37091825 -64288696 - AluJo SINE Alu -16 296 1 2066 125 3 0 chr15 37091997 37092308 -64288213 - AluSx SINE Alu 0 312 1 638 222 0 17 chr15 37092324 37092441 -64288080 - FLAM_A SINE Alu -18 115 1 1405 196 59 28 chr15 37092563 37092849 -64287672 - AluJo SINE Alu -7 295 1 1111 147 0 11 chr15 37092908 37093085 -64287436 - AluSg/x SINE Alu -3 309 135 1841 124 10 51 chr15 37093086 37093400 -64287121 - AluSx SINE Alu -11 301 1 9617 27 5 188 chr15 37094103 37095834 -64284687 + SVA Other Other 5 1386 0 708 167 24 24 chr15 37096001 37096127 -64284394 + AluJb SINE Alu 2 127 -185 1139 184 24 0 chr15 37096244 37096456 -64284065 - AluJo SINE Alu -11 301 85 2365 74 0 0 chr15 37096501 37096800 -64283721 + AluSq SINE Alu 3 301 -12 947 105 45 0 chr15 37097058 37097191 -64283330 + AluSq/x SINE Alu 4 142 -171 543 73 0 0 chr15 37097191 37097259 -64283262 - Tigger1 DNA MER2_type -866 1552 1485 4889 103 182 54 chr15 37097264 37097361 -64283160 - Tigger1 DNA MER2_type -1273 1145 1062 1478 191 0 0 chr15 37097361 37097617 -64282904 - AluJo SINE Alu -56 256 1 4889 103 182 54 chr15 37097617 37097832 -64282689 - Tigger1 DNA MER2_type -1356 1062 876 1787 133 13 29 chr15 37097832 37098141 -64282380 - AluJb SINE Alu -8 304 1 4889 103 182 54 chr15 37098141 37098332 -64282189 - Tigger1 DNA MER2_type -1542 876 711 2009 110 10 3 chr15 37098332 37098631 -64281890 - AluSq SINE Alu -7 306 6 4889 103 182 54 chr15 37098631 37098976 -64281545 - Tigger1 DNA MER2_type -1707 711 412 2105 86 23 7 chr15 37098976 37099279 -64281242 + AluY SINE Alu 1 308 -3 4889 103 182 54 chr15 37099279 37099394 -64281127 - Tigger1 DNA MER2_type -2006 412 55 2109 114 3 0 chr15 37099415 37099714 -64280807 + AluSx SINE Alu 1 300 -12 1905 158 0 0 chr15 37099726 37100030 -64280491 + AluSx SINE Alu 1 304 -8 1868 124 13 13 chr15 37100266 37100572 -64279949 - AluSp SINE Alu -7 306 1 233 230 128 47 chr15 37100890 37101038 -64279483 + L1MC5 LINE L1 7755 7914 -47 2146 99 3 7 chr15 37101276 37101580 -64278941 + AluSc SINE Alu 1 303 -6 1296 179 120 7 chr15 37101594 37101868 -64278653 + AluSx SINE Alu 1 305 -7 284 246 0 0 chr15 37101871 37101940 -64278581 + L1MC5 LINE L1 7709 7777 -184 810 126 0 0 chr15 37101956 37102075 -64278446 - FLAM_C SINE Alu -12 131 13 397 232 0 0 chr15 37102098 37102180 -64278341 + L1MC5 LINE L1 7807 7888 -73 801 92 17 0 chr15 37102672 37102791 -64277730 + AluSg/x SINE Alu 192 312 0 2108 113 0 0 chr15 37103011 37103311 -64277210 - AluSg SINE Alu -10 300 1 1063 159 88 39 chr15 37103342 37103390 -64277131 - MER33 DNA MER1_type -2262 323 279 2018 128 7 0 chr15 37103390 37103694 -64276827 - AluSg1 SINE Alu -3 306 1 1063 159 88 39 chr15 37103694 37103794 -64276727 - MER33 DNA MER1_type -2306 279 185 2057 89 3 33 chr15 37103794 37104097 -64276424 - AluSp SINE Alu -19 294 1 2317 55 24 0 chr15 37104107 37104400 -64276121 - AluY SINE Alu -11 300 1 1063 159 88 39 chr15 37104400 37104547 -64275974 - MER33 DNA MER1_type -2408 177 1 640 152 0 0 chr15 37105045 37105137 -64275384 + AluSg/x SINE Alu 85 176 -134 219 376 144 24 chr15 37105161 37105450 -64275071 - L2 LINE L2 -2425 889 562 2095 85 20 0 chr15 37105450 37105743 -64274778 + AluSp SINE Alu 9 307 -6 1696 158 7 0 chr15 37105919 37106198 -64274323 + AluJb SINE Alu 20 300 -12 685 186 0 0 chr15 37106240 37106353 -64274168 - AluSg/x SINE Alu -11 299 187 1404 113 9 35 chr15 37106453 37106682 -64273839 + AluSp SINE Alu 88 310 -3 1844 139 14 0 chr15 37107180 37107468 -64273053 + AluSg SINE Alu 1 292 -18 719 159 0 0 chr15 37108146 37108253 -64272268 + AluSg/x SINE Alu 194 300 -10 1978 86 4 0 chr15 37108386 37108642 -64271879 + AluSp SINE Alu 37 293 -20 23 33 0 0 chr15 37108642 37108672 -64271849 + AT_rich Low_complexity Low_complexity 1 30 0 683 183 15 15 chr15 37108678 37108809 -64271712 + FLAM_C SINE Alu 2 132 -1 682 208 0 0 chr15 37109308 37109433 -64271088 + FLAM_A SINE Alu 2 126 -7 42 20 0 0 chr15 37109448 37109497 -64271024 + AT_rich Low_complexity Low_complexity 1 49 0 2195 82 0 41 chr15 37109649 37109968 -64270553 - AluY SINE Alu -5 306 1 557 165 0 0 chr15 37110102 37110187 -64270334 - AluJ/FLAM SINE Alu -225 87 3 836 204 6 23 chr15 37110585 37110597 -64269924 - AluJb SINE Alu -7 305 294 1850 138 6 58 chr15 37110597 37110923 -64269598 - AluSx SINE Alu -3 309 1 836 204 6 23 chr15 37110923 37111082 -64269439 - AluJb SINE Alu -18 294 137 2011 116 3 3 chr15 37111240 37111533 -64268988 + AluSq SINE Alu 3 295 -18 2109 100 6 10 chr15 37111658 37111969 -64268552 + AluSg SINE Alu 1 310 0 904 212 0 12 chr15 37112043 37112208 -64268313 + FRAM SINE Alu 1 163 -3 2150 117 0 0 chr15 37112250 37112559 -64267962 + AluSx SINE Alu 1 309 -3 2015 104 0 0 chr15 37112678 37112948 -64267573 - AluSg SINE Alu -40 270 1 2526 49 0 0 chr15 37112954 37113259 -64267262 - AluY SINE Alu -6 305 1 349 197 0 0 chr15 37113259 37113320 -64267201 + AluY SINE Alu 114 174 -127 908 162 14 0 chr15 37113341 37113489 -64267032 + AluJb SINE Alu 136 285 -27 237 125 50 0 chr15 37113524 37113564 -64266957 + L2 LINE L2 3266 3307 -6 2211 97 0 3 chr15 37113597 37113895 -64266626 - AluSq SINE Alu -16 297 1 235 160 0 40 chr15 37113904 37113954 -64266567 - Alu SINE Alu 0 133 86 2417 81 0 3 chr15 37114066 37114376 -64266145 - AluY SINE Alu -2 309 1 1550 140 3 101 chr15 37114385 37114548 -64265973 - AluJo SINE Alu -16 296 179 1887 138 10 7 chr15 37114548 37114845 -64265676 - AluSx SINE Alu -14 298 1 1550 140 3 101 chr15 37114845 37115009 -64265512 - AluJo SINE Alu -133 179 1 2200 92 0 10 chr15 37115479 37115784 -64264737 - AluSg SINE Alu -7 303 2 2283 84 7 7 chr15 37115787 37116096 -64264425 - AluSq SINE Alu -4 309 1 1411 181 50 7 chr15 37116099 37116380 -64264141 - AluJb SINE Alu -19 293 1 1997 119 3 3 chr15 37116385 37116680 -64263841 - AluSg SINE Alu -15 295 1 2288 79 0 13 chr15 37116773 37117078 -64263443 - AluY SINE Alu -10 301 1 1028 149 36 5 chr15 37117349 37117544 -64262977 + AluJo SINE Alu 87 287 -25 180 0 0 0 chr15 37119265 37119285 -64261236 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1787 87 97 67 chr15 37119595 37119893 -64260628 + AluSx SINE Alu 1 307 -5 1799 65 5 0 chr15 37120069 37120283 -64260238 - AluSg SINE Alu -95 215 1 993 93 0 0 chr15 37120584 37120713 -64259808 - AluJb SINE Alu -183 129 1 482 229 60 27 chr15 37120738 37120921 -64259600 + L1MC5 LINE L1 7729 7917 -44 21 0 0 0 chr15 37121104 37121125 -64259396 + AT_rich Low_complexity Low_complexity 1 21 0 213 156 47 16 chr15 37121129 37121193 -64259328 + (TA)n Simple_repeat Simple_repeat 1 66 0 182 100 0 78 chr15 37121233 37121323 -64259198 + (TA)n Simple_repeat Simple_repeat 2 84 0 287 112 21 64 chr15 37121358 37121546 -64258975 + (TA)n Simple_repeat Simple_repeat 1 180 0 309 101 38 114 chr15 37121575 37121733 -64258788 + (CTATA)n Simple_repeat Simple_repeat 2 147 0 27 96 0 0 chr15 37121761 37121844 -64258677 + AT_rich Low_complexity Low_complexity 1 83 0 2006 108 3 21 chr15 37121844 37122130 -64258391 + AluSq SINE Alu 1 281 -32 264 30 0 0 chr15 37122130 37122163 -64258358 + (TAA)n Simple_repeat Simple_repeat 1 33 0 659 294 133 8 chr15 37122252 37122507 -64258014 + L2 LINE L2 974 1260 -2054 189 0 0 0 chr15 37122514 37122535 -64257986 + (T)n Simple_repeat Simple_repeat 1 21 0 1166 269 207 55 chr15 37122659 37122837 -64257684 + L2 LINE L2 1276 1426 -1888 1817 151 6 43 chr15 37122837 37123161 -64257360 - AluJb SINE Alu 0 312 1 1166 269 207 55 chr15 37123161 37123763 -64256758 + L2 LINE L2 1426 2205 -1109 2299 115 0 6 chr15 37123763 37124077 -64256444 - AluSx SINE Alu 0 312 1 1166 269 207 55 chr15 37124077 37124169 -64256352 + L2 LINE L2 2205 2282 -1032 1052 71 169 0 chr15 37124275 37124429 -64256092 + AluSp SINE Alu 134 313 0 703 71 0 10 chr15 37124459 37124558 -64255963 - AluY SINE Alu -3 308 211 374 277 152 48 chr15 37124861 37125092 -64255429 - MIR SINE MIR -1 261 7 2194 125 0 3 chr15 37125430 37125734 -64254787 - AluSx SINE Alu -9 303 1 1296 71 0 0 chr15 37126496 37126650 -64253871 + AluSg/x SINE Alu 154 307 -5 243 204 0 0 chr15 37126786 37126835 -64253686 + L2 LINE L2 3265 3313 0 208 329 0 13 chr15 37127078 37127154 -64253367 + MER5A DNA MER1_type 1 75 -114 2360 93 0 6 chr15 37127154 37127466 -64253055 + AluY SINE Alu 1 310 -1 477 195 0 0 chr15 37127474 37127551 -64252970 + FLAM_A SINE Alu 45 121 -21 1747 171 18 3 chr15 37127835 37128121 -64252400 + AluJb SINE Alu 7 296 -16 1016 184 11 6 chr15 37128578 37128752 -64251769 + AluJb SINE Alu 1 175 -137 423 221 0 0 chr15 37128753 37128830 -64251691 + Alu SINE Alu 223 299 -11 22 56 0 0 chr15 37128842 37128878 -64251643 + AT_rich Low_complexity Low_complexity 1 36 0 1913 146 14 7 chr15 37128878 37129173 -64251348 + AluJo SINE Alu 3 299 -13 1685 114 28 0 chr15 37129180 37129435 -64251086 + AluSp SINE Alu 1 262 -51 313 267 84 0 chr15 37129547 37129678 -64250843 + MER112 DNA MER1_type 30 171 -89 205 391 33 0 chr15 37130083 37130175 -64250346 + L2 LINE L2 3182 3276 -37 2200 106 0 3 chr15 37130196 37130511 -64250010 + AluSx SINE Alu 1 314 0 2000 112 14 0 chr15 37130581 37130858 -64249663 + AluSx SINE Alu 1 281 -31 2507 64 3 0 chr15 37131178 37131476 -64249045 + AluSg1 SINE Alu 1 299 -10 1592 118 36 5 chr15 37131979 37132237 -64248284 + AluSx SINE Alu 58 322 0 1722 183 3 20 chr15 37132237 37132543 -64247978 + AluJb SINE Alu 1 301 -11 833 488 8 8 chr15 37132601 37132847 -64247674 - AluSx SINE Alu -13 299 54 352 213 0 25 chr15 37132854 37132934 -64247587 - L1M4 LINE L1 -1067 5079 5002 1171 110 7 0 chr15 37132936 37133091 -64247430 - AluSg/x SINE Alu -23 287 132 2097 110 10 7 chr15 37133091 37133382 -64247139 - AluSg1 SINE Alu -17 292 1 2307 60 18 3 chr15 37133395 37133680 -64246841 - AluY SINE Alu -20 291 3 2410 80 0 13 chr15 37133682 37133982 -64246539 - AluY SINE Alu -11 300 5 931 219 0 17 chr15 37133989 37134167 -64246354 - FAM SINE Alu 0 175 1 356 179 77 0 chr15 37134168 37134246 -64246275 - L1M4 LINE L1 -1141 5005 4922 1565 131 6 125 chr15 37134288 37134424 -64246097 + AluJb SINE Alu 1 152 -160 1626 180 7 20 chr15 37134424 37134719 -64245802 + AluJo SINE Alu 1 291 -21 1565 131 6 125 chr15 37134719 37134933 -64245588 + AluJb SINE Alu 152 309 -3 6940 55 6 42 chr15 37134969 37136203 -64244318 - SVA Other Other -520 1386 432 2526 61 0 0 chr15 37136432 37136726 -64243795 + AluY SINE Alu 2 295 -16 2384 95 10 0 chr15 37136739 37137045 -64243476 + AluY SINE Alu 2 310 -1 23 86 0 0 chr15 37137119 37137177 -64243344 + AT_rich Low_complexity Low_complexity 1 58 0 1182 255 68 98 chr15 37137209 37137324 -64243197 - L2 LINE L2 -18 3295 3178 1782 141 65 21 chr15 37137324 37137614 -64242907 + AluSq SINE Alu 1 303 -10 1182 255 68 98 chr15 37137614 37138047 -64242474 - L2 LINE L2 -135 3178 2734 2227 134 0 3 chr15 37138047 37138360 -64242161 - AluSx SINE Alu 0 312 1 1182 255 68 98 chr15 37138360 37138402 -64242119 - L2 LINE L2 -579 2734 2692 2273 119 35 22 chr15 37138402 37138772 -64241749 + THE1C LTR MaLR 1 375 0 1182 255 68 98 chr15 37138772 37139087 -64241434 - L2 LINE L2 -621 2692 2434 2351 107 0 23 chr15 37139108 37139278 -64241243 - AluSx SINE Alu -9 303 131 2264 54 50 24 chr15 37139278 37139576 -64240945 - AluY SINE Alu -5 306 1 2267 71 32 0 chr15 37139576 37139857 -64240664 - AluSc SINE Alu -19 290 1 2351 107 0 23 chr15 37139857 37139995 -64240526 - AluSx SINE Alu -179 133 1 2462 68 3 19 chr15 37140006 37140314 -64240207 - AluSp SINE Alu -4 309 7 492 78 0 65 chr15 37140608 37140685 -64239836 - Alu SINE Alu -7 303 232 912 94 0 0 chr15 37140685 37140802 -64239719 - AluSq/x SINE Alu -196 117 1 1154 173 6 0 chr15 37142368 37142564 -64237957 - AluJb SINE Alu 0 306 110 436 73 0 0 chr15 37142584 37142639 -64237882 + AluSc SINE Alu 29 83 -226 2541 59 0 0 chr15 37142641 37142944 -64237577 + AluY SINE Alu 1 303 -8 1735 112 4 0 chr15 37142944 37143177 -64237344 + AluSg/x SINE Alu 77 310 0 486 219 29 0 chr15 37143190 37143295 -64237226 - FLAM_C SINE Alu -34 109 2 909 141 0 126 chr15 37143296 37143333 -64237188 - AluJo SINE Alu -7 305 265 2090 108 38 0 chr15 37143333 37143620 -64236901 + AluSq SINE Alu 1 298 -15 909 141 0 126 chr15 37143620 37143788 -64236733 - AluJo SINE Alu -47 265 126 2250 117 0 3 chr15 37143797 37144104 -64236417 + AluSq SINE Alu 1 306 -7 2097 128 0 10 chr15 37144108 37144243 -64236278 + AluSq SINE Alu 1 136 -177 1991 114 28 3 chr15 37144243 37144532 -64235989 + AluSx SINE Alu 1 296 -16 2097 128 0 10 chr15 37144532 37144693 -64235828 + AluSq SINE Alu 136 294 -19 2823 10 0 7 chr15 37144697 37145006 -64235515 + AluYa5 SINE Alu 1 307 -4 262 135 0 0 chr15 37145006 37145043 -64235478 + AluSq SINE Alu 126 162 -141 1081 146 0 0 chr15 37145045 37145210 -64235311 + AluSg/x SINE Alu 142 306 -4 2047 103 18 0 chr15 37145216 37145488 -64235033 + AluSp SINE Alu 1 277 -36 1045 106 0 0 chr15 37145592 37145724 -64234797 - AluY SINE Alu -179 132 1 180 347 71 0 chr15 37145751 37145849 -64234672 - MIR SINE MIR -59 203 99 1983 101 44 40 chr15 37145860 37146156 -64234365 - AluSx SINE Alu -15 297 1 1263 98 0 0 chr15 37146156 37146320 -64234201 - AluSg/x SINE Alu -9 303 140 2360 79 31 0 chr15 37146323 37146614 -64233907 - AluSx SINE Alu -12 300 1 617 213 147 0 chr15 37147027 37147177 -64233344 - MIR SINE MIR -25 237 66 2580 63 0 0 chr15 37147617 37147918 -64232603 - AluSg SINE Alu -9 301 1 2247 82 32 0 chr15 37148178 37148460 -64232061 - AluSg SINE Alu -19 291 1 301 299 64 35 chr15 37148600 37148870 -64231651 + L1MC4 LINE L1 7720 8002 -40 2344 105 3 3 chr15 37148870 37149174 -64231347 - AluSp SINE Alu -9 304 1 301 299 64 35 chr15 37149174 37149217 -64231304 + L1MC4 LINE L1 8002 8042 0 2042 139 30 0 chr15 37149235 37149536 -64230985 - AluSq SINE Alu -3 310 1 685 310 205 15 chr15 37149537 37149995 -64230526 + L2 LINE L2 2772 3313 0 2184 113 0 10 chr15 37150534 37150827 -64229694 - AluSg SINE Alu -20 290 1 376 317 103 34 chr15 37151202 37151464 -64229057 + L2 LINE L2 2682 2961 -353 2276 97 3 3 chr15 37152020 37152318 -64228203 + AluSx SINE Alu 1 298 -14 231 284 39 39 chr15 37152508 37152610 -64227911 + MIR3 SINE MIR 14 115 -93 2407 100 0 0 chr15 37152766 37153067 -64227454 - AluSx SINE Alu -11 301 1 2266 85 3 36 chr15 37153083 37153390 -64227131 - AluSq SINE Alu -16 297 1 620 223 0 0 chr15 37153405 37153526 -64226995 - FLAM_A SINE Alu -10 123 3 264 239 15 0 chr15 37153534 37153601 -64226920 - MIR SINE MIR -73 189 122 454 129 0 0 chr15 37154026 37154096 -64226425 - Alu SINE Alu -7 305 236 2189 127 3 3 chr15 37154096 37154404 -64226117 - AluSg1 SINE Alu -1 308 1 2054 112 14 0 chr15 37154407 37154712 -64225809 - AluSc SINE Alu 0 309 1 1048 103 0 0 chr15 37154712 37154848 -64225673 - AluSq/x SINE Alu -177 136 1 364 304 133 58 chr15 37154910 37155255 -64225266 + L2 LINE L2 2329 2699 -615 1048 65 72 13 chr15 37155256 37155269 -64225252 + AluSq SINE Alu 122 133 -189 2330 94 0 7 chr15 37155269 37155576 -64224945 + AluSq SINE Alu 1 305 -8 1048 65 72 13 chr15 37155576 37155754 -64224767 + AluSq SINE Alu 133 322 0 970 99 8 0 chr15 37155767 37155898 -64224623 + FLAM_C SINE Alu 1 132 -11 307 315 135 37 chr15 37155902 37156197 -64224324 + L2 LINE L2 2705 3029 -243 227 226 12 48 chr15 37156518 37156602 -64223919 + (CGGGG)n Simple_repeat Simple_repeat 4 84 0 189 107 0 0 chr15 37156632 37156660 -64223861 + (CGG)n Simple_repeat Simple_repeat 3 30 0 256 312 0 54 chr15 37157751 37157844 -64222677 + MIR3 SINE MIR 8 95 -113 1055 41 57 0 chr15 37158025 37158148 -64222373 + AluSp SINE Alu 1 130 -183 2242 89 16 20 chr15 37159011 37159314 -64221207 - AluY SINE Alu -9 302 1 1053 171 0 17 chr15 37159402 37159420 -64221101 - AluSg/x SINE Alu -1 309 292 2221 100 3 7 chr15 37159420 37159721 -64220800 - AluSc SINE Alu -9 300 1 1053 171 0 17 chr15 37159721 37159883 -64220638 - AluSg/x SINE Alu -18 292 132 2167 118 0 38 chr15 37159883 37160052 -64220469 - AluSx SINE Alu -9 303 150 2261 88 10 29 chr15 37160052 37160358 -64220163 - AluY SINE Alu -11 300 1 2167 118 0 38 chr15 37160358 37160503 -64220018 - AluSx SINE Alu -162 150 1 346 165 122 139 chr15 37160503 37160618 -64219903 - MIR SINE MIR -133 129 17 436 185 0 0 chr15 37161055 37161120 -64219401 + AluJ/FLAM SINE Alu 3 67 -245 21 0 0 0 chr15 37161174 37161195 -64219326 + AT_rich Low_complexity Low_complexity 1 21 0 994 64 0 8 chr15 37161440 37161565 -64218956 + AluSg/x SINE Alu 175 298 -14 2404 86 0 3 chr15 37161601 37161903 -64218618 + AluSg SINE Alu 1 301 -9 1016 188 125 22 chr15 37161963 37162235 -64218286 - L1ME1 LINE L1 -118 6048 5749 956 208 43 29 chr15 37162342 37162549 -64217972 - AluJb SINE Alu -18 294 85 2224 99 0 3 chr15 37162571 37162906 -64217615 + AluSc SINE Alu 1 334 0 2210 119 3 0 chr15 37162915 37163209 -64217312 + AluSx SINE Alu 1 295 -17 2469 82 3 0 chr15 37163558 37163863 -64216658 + AluY SINE Alu 1 306 -5 1546 215 7 7 chr15 37163865 37164172 -64216349 + AluJo SINE Alu 1 307 -5 1492 104 5 0 chr15 37164210 37164402 -64216119 - AluSq SINE Alu -120 193 1 915 135 0 0 chr15 37164418 37164544 -64215977 - AluJb SINE Alu -186 126 1 2036 112 25 0 chr15 37164651 37164957 -64215564 - AluSq SINE Alu 0 313 1 258 310 77 52 chr15 37165346 37165501 -64215020 + L2 LINE L2 3151 3309 -4 2284 135 0 0 chr15 37165779 37166091 -64214430 - AluSq SINE Alu -1 312 1 3732 96 40 42 chr15 37166129 37166725 -64213796 - LTR61 LTR ERV1 0 595 1 1562 193 91 36 chr15 37167221 37167528 -64212993 - MLT1C LTR MaLR -3 464 124 1687 203 10 3 chr15 37167528 37167823 -64212698 + AluJb SINE Alu 1 297 -15 1562 193 91 36 chr15 37167823 37167955 -64212566 - MLT1C LTR MaLR -343 124 1 2393 87 0 3 chr15 37167968 37168266 -64212255 - AluSg SINE Alu -13 297 1 36 23 0 0 chr15 37168303 37168346 -64212175 + AT_rich Low_complexity Low_complexity 1 43 0 277 183 16 35 chr15 37168533 37168601 -64211920 - MER5A DNA MER1_type -87 102 26 244 0 0 0 chr15 37168602 37168629 -64211892 + (TTTA)n Simple_repeat Simple_repeat 2 84 0 1642 137 118 8 chr15 37168629 37168881 -64211640 - AluSg1 SINE Alu -7 302 1 1186 221 55 18 chr15 37168883 37169171 -64211350 - L1MC4 LINE L1 -476 7566 7263 1978 146 30 0 chr15 37169171 37169466 -64211055 - AluSx SINE Alu -8 304 1 1186 221 55 18 chr15 37169466 37169507 -64211014 - L1MC4 LINE L1 -779 7263 7225 204 306 49 54 chr15 37169798 37169999 -64210522 + L2 LINE L2 2796 2997 -275 673 200 9 0 chr15 37170119 37170234 -64210287 + FLAM_A SINE Alu 1 116 -17 2005 117 14 0 chr15 37170249 37170539 -64209982 + AluSx SINE Alu 1 294 -18 180 0 0 0 chr15 37170695 37170715 -64209806 + (TA)n Simple_repeat Simple_repeat 2 21 0 26 0 0 0 chr15 37170716 37170742 -64209779 + AT_rich Low_complexity Low_complexity 1 26 0 2275 68 0 7 chr15 37170761 37171056 -64209465 + AluY SINE Alu 1 293 -18 809 127 0 0 chr15 37171056 37171174 -64209347 - AluJo/FLAM SINE Alu -194 118 1 2207 96 0 0 chr15 37171186 37171488 -64209033 - AluSc SINE Alu 0 309 8 2284 86 0 6 chr15 37171689 37172002 -64208519 - AluY SINE Alu 0 311 1 265 305 79 89 chr15 37172229 37172371 -64208150 + MIR SINE MIR 12 153 -109 2025 124 0 3 chr15 37172371 37172677 -64207844 - AluSc SINE Alu -4 305 1 265 305 79 89 chr15 37172677 37172724 -64207797 + MIR SINE MIR 153 199 -63 319 200 211 11 chr15 37173015 37173110 -64207411 + MER58 DNA MER1_type 3 116 -99 1147 135 6 0 chr15 37173111 37173289 -64207232 + AluSq SINE Alu 1 179 -134 1406 103 0 5 chr15 37173390 37173584 -64206937 - AluSp SINE Alu -120 193 1 226 245 19 0 chr15 37173584 37173637 -64206884 + MER58 DNA MER1_type 2367 2420 0 1948 116 14 3 chr15 37174294 37174587 -64205934 + AluSx SINE Alu 1 296 -16 783 143 0 16 chr15 37174973 37175099 -64205422 - AluJo SINE Alu -178 134 11 2031 115 20 3 chr15 37175458 37175762 -64204759 - AluSq SINE Alu 0 313 5 1063 163 0 0 chr15 37175803 37175981 -64204540 - AluSg/x SINE Alu -17 293 116 349 191 0 0 chr15 37175981 37176044 -64204477 - AluS SINE Alu -5 295 233 1338 71 60 0 chr15 37176149 37176332 -64204189 - AluSc SINE Alu -24 285 92 884 112 51 84 chr15 37176622 37176677 -64203844 - L1MA5A LINE L1 -5 6292 6237 2287 90 0 6 chr15 37176677 37176988 -64203533 - AluSc SINE Alu 0 309 1 884 112 51 84 chr15 37176988 37177110 -64203411 - L1MA5A LINE L1 -60 6237 6121 642 187 19 0 chr15 37177128 37177235 -64203286 - FLAM_C SINE Alu -30 113 5 2103 102 30 0 chr15 37177247 37177550 -64202971 - AluSx SINE Alu 0 312 1 3704 212 101 32 chr15 37177560 37178910 -64201611 - L1M2c LINE L1 -4937 1852 92 755 161 8 0 chr15 37178917 37179035 -64201486 + FLAM_A SINE Alu 8 126 -16 574 120 87 0 chr15 37179041 37179133 -64201388 - L1M2c LINE L1 -6687 102 3 814 139 0 19 chr15 37179263 37179421 -64201100 + AluYa5 SINE Alu 127 281 -30 1238 184 0 14 chr15 37179445 37179509 -64201012 + AluSg/x SINE Alu 70 133 -177 2255 95 3 0 chr15 37179509 37179813 -64200708 + AluSx SINE Alu 1 305 -7 1238 184 0 14 chr15 37179813 37179971 -64200550 + AluSg/x SINE Alu 133 289 -21 350 148 40 50 chr15 37179973 37180074 -64200447 - MER104 DNA Tc2 -78 102 3 237 65 0 0 chr15 37180228 37180259 -64200262 + (GGA)n Simple_repeat Simple_repeat 1 31 0 2239 95 10 0 chr15 37180802 37181108 -64199413 - AluSq SINE Alu -4 309 1 518 296 228 16 chr15 37181393 37181704 -64198817 - L1ME1 LINE L1 -306 5860 5484 544 195 130 52 chr15 37181951 37182105 -64198416 - MLT1A1 LTR MaLR -198 167 2 1943 117 10 0 chr15 37182105 37182395 -64198126 - AluSc SINE Alu -16 293 1 1251 122 0 20 chr15 37182400 37182579 -64197942 - AluSg/x SINE Alu 0 310 134 1908 121 10 36 chr15 37182579 37182745 -64197776 - AluSc SINE Alu -10 299 143 2251 84 7 0 chr15 37182745 37183041 -64197480 - AluSp SINE Alu -10 303 6 1908 121 10 36 chr15 37183041 37183181 -64197340 - AluSc SINE Alu -166 143 1 1251 122 0 20 chr15 37183181 37183198 -64197323 - AluSg/x SINE Alu -176 134 118 1308 115 0 0 chr15 37183469 37183661 -64196860 + AluSq SINE Alu 116 307 -6 2021 89 3 17 chr15 37183683 37183974 -64196547 + AluSx SINE Alu 1 287 -25 2182 80 0 23 chr15 37183976 37184275 -64196246 + AluY SINE Alu 1 292 -19 32 0 0 0 chr15 37184275 37184307 -64196214 + AT_rich Low_complexity Low_complexity 1 32 0 1740 163 0 20 chr15 37184363 37184664 -64195857 + AluSx SINE Alu 1 295 -17 2391 54 0 0 chr15 37184988 37185282 -64195239 + AluY SINE Alu 1 294 -17 2208 50 50 0 chr15 37185293 37185574 -64194947 + AluY SINE Alu 1 295 -16 267 330 25 25 chr15 37185607 37185725 -64194796 - MER5B DNA MER1_type -60 118 1 392 83 0 0 chr15 37186218 37186266 -64194255 - FLAM SINE Alu -12 121 74 477 233 21 41 chr15 37186675 37186830 -64193691 + L1ME LINE L1 5514 5662 -504 461 216 39 0 chr15 37186836 37186938 -64193583 + L1 LINE L1 4218 4323 -1823 2125 108 0 0 chr15 37186939 37187234 -64193287 + AluSx SINE Alu 1 295 -17 22 35 0 0 chr15 37187240 37187269 -64193252 + GC_rich Low_complexity Low_complexity 1 29 0 2650 88 31 90 chr15 37187320 37188011 -64192510 + SVA Other Other 393 868 -555 2320 81 0 0 chr15 37188157 37188455 -64192066 + AluSx SINE Alu 1 298 -14 2200 97 3 10 chr15 37188599 37188910 -64191611 - AluY SINE Alu 0 311 3 2010 143 0 3 chr15 37189222 37189530 -64190991 - AluSx SINE Alu -5 307 1 22 56 0 0 chr15 37189648 37189684 -64190837 + AT_rich Low_complexity Low_complexity 1 36 0 2260 91 7 0 chr15 37189759 37190067 -64190454 - AluSx SINE Alu -2 310 1 2122 104 3 3 chr15 37190069 37190366 -64190155 - AluSc SINE Alu -12 297 1 2414 70 0 0 chr15 37190547 37190849 -64189672 - AluY SINE Alu -9 302 1 2146 94 0 0 chr15 37191749 37192035 -64188486 - AluY SINE Alu -15 296 11 1893 151 0 0 chr15 37192182 37192480 -64188041 + AluSx SINE Alu 1 298 -14 807 163 7 0 chr15 37193196 37193331 -64187190 + AluJ SINE Alu 1 136 -176 2429 64 0 10 chr15 37193363 37193677 -64186844 + AluY SINE Alu 1 311 0 1046 188 0 0 chr15 37193688 37193864 -64186657 + AluJ SINE Alu 124 299 -13 2107 95 3 3 chr15 37193875 37194170 -64186351 - AluSx SINE Alu -17 295 1 2319 70 0 13 chr15 37194497 37194811 -64185710 - AluY SINE Alu -1 310 1 1854 150 0 16 chr15 37195311 37195617 -64184904 - AluSx SINE Alu -11 301 1 183 277 181 24 chr15 37195772 37195855 -64184666 - MIR3 SINE MIR -5 203 108 1992 92 43 0 chr15 37195865 37196146 -64184375 + AluY SINE Alu 1 293 -18 265 186 29 71 chr15 37196232 37196302 -64184219 - MIR SINE MIR -72 190 124 2121 120 0 0 chr15 37196384 37196683 -64183838 - AluSx SINE Alu -13 299 1 26 0 0 0 chr15 37197929 37197955 -64182566 + AT_rich Low_complexity Low_complexity 1 26 0 706 151 0 0 chr15 37197966 37198072 -64182449 + AluSx SINE Alu 2 107 -205 1264 108 0 0 chr15 37198122 37198298 -64182223 + AluSx SINE Alu 104 279 -31 216 0 0 0 chr15 37198301 37198325 -64182196 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 694 101 40 0 chr15 37198325 37198424 -64182097 - U6 snRNA snRNA -3 104 2 55 0 0 15 chr15 37198427 37198472 -64182049 + AT_rich Low_complexity Low_complexity 1 46 -19 1797 151 3 0 chr15 37198472 37198764 -64181757 - AluJb SINE Alu -19 293 1 55 0 0 15 chr15 37198764 37198784 -64181737 + AT_rich Low_complexity Low_complexity 46 65 0 2012 56 0 4 chr15 37198808 37199060 -64181461 - AluY SINE Alu -7 304 54 25 0 0 0 chr15 37199075 37199100 -64181421 + AT_rich Low_complexity Low_complexity 1 25 0 749 169 0 0 chr15 37199107 37199225 -64181296 - FLAM_C SINE Alu -15 118 1 685 204 8 0 chr15 37199272 37199404 -64181117 + FLAM_A SINE Alu 6 138 -4 42 20 0 0 chr15 37199446 37199495 -64181026 + AT_rich Low_complexity Low_complexity 1 49 0 1758 185 3 0 chr15 37199497 37199805 -64180716 + AluJo SINE Alu 1 309 -3 2077 86 3 51 chr15 37199870 37200184 -64180337 + AluSx SINE Alu 1 299 -13 1787 159 3 10 chr15 37200250 37200558 -64179963 + AluJo SINE Alu 1 306 -6 841 167 0 0 chr15 37201501 37201633 -64178888 + FLAM_A SINE Alu 1 132 -1 1831 153 0 3 chr15 37201738 37202032 -64178489 + AluJb SINE Alu 1 293 -19 1911 155 0 0 chr15 37202037 37202328 -64178193 + AluJo SINE Alu 2 292 -20 1777 161 19 19 chr15 37203028 37203339 -64177182 + AluJo SINE Alu 1 311 -1 31 26 0 0 chr15 37203406 37203444 -64177077 + AT_rich Low_complexity Low_complexity 1 38 0 1947 117 26 13 chr15 37203666 37203975 -64176546 - AluSq SINE Alu 0 313 1 1493 211 66 18 chr15 37203981 37204389 -64176132 + L1MC4 LINE L1 7107 7538 -504 513 199 122 32 chr15 37204390 37204546 -64175975 - MER3 DNA MER1_type -80 129 7 2078 102 47 66 chr15 37204582 37204618 -64175903 + L1PB2 LINE L1 5755 5790 -361 2143 104 3 0 chr15 37204618 37204917 -64175604 + AluSg SINE Alu 1 300 -10 2078 102 47 66 chr15 37204917 37205107 -64175414 + L1PB2 LINE L1 5790 5974 -177 1611 140 103 0 chr15 37205107 37205379 -64175142 + AluSx SINE Alu 1 300 -12 2078 102 47 66 chr15 37205379 37205515 -64175006 + L1PB2 LINE L1 5974 6111 -40 1734 120 84 0 chr15 37205515 37205789 -64174732 + AluSq SINE Alu 1 297 -16 2209 92 0 10 chr15 37205789 37206092 -64174429 + AluY SINE Alu 1 300 -11 1911 125 28 0 chr15 37206100 37206387 -64174134 + AluSq SINE Alu 1 295 -18 2054 96 3 7 chr15 37206389 37206671 -64173850 + AluSc SINE Alu 1 281 -28 799 116 0 89 chr15 37206696 37206842 -64173679 + FLAM_C SINE Alu 2 134 -9 1980 108 37 0 chr15 37206844 37207140 -64173381 + AluSq SINE Alu 6 312 -1 298 274 94 8 chr15 37207678 37207795 -64172726 - MIR SINE MIR -38 224 98 * 539 214 68 8 chr15 37207792 37207909 -64172612 + L2 LINE L2 3190 3313 0 339 247 0 14 chr15 37207910 37207983 -64172538 - MIR SINE MIR -157 105 34 1783 120 7 7 chr15 37208084 37208360 -64172161 + AluSx SINE Alu 36 311 -1 2012 117 3 3 chr15 37208374 37208673 -64171848 + AluSx SINE Alu 1 299 -13 1605 151 28 11 chr15 37208683 37208968 -64171553 + AluJb SINE Alu 1 290 -22 2434 83 0 0 chr15 37209690 37210003 -64170518 - AluSq SINE Alu 0 313 1 1524 180 24 20 chr15 37210279 37210445 -64170076 - AluSx SINE Alu -7 295 131 2067 118 6 10 chr15 37210445 37210623 -64169898 - AluSx SINE Alu 0 312 134 2275 76 0 13 chr15 37210623 37210927 -64169594 - AluSq SINE Alu -13 300 1 2067 118 6 10 chr15 37210927 37211061 -64169460 - AluSx SINE Alu -178 134 1 2192 87 10 0 chr15 37211068 37211366 -64169155 - AluY SINE Alu -7 304 4 1524 180 24 20 chr15 37211366 37211485 -64169036 - AluSx SINE Alu -176 126 1 850 150 0 8 chr15 37211501 37211634 -64168887 - FLAM_C SINE Alu 0 133 2 233 299 111 17 chr15 37211941 37212058 -64168463 + MIR3 SINE MIR 3 130 -78 2626 155 109 71 chr15 37212350 37212548 -64167973 - L1MB8 LINE L1 -46 6132 5943 1592 167 7 7 chr15 37212548 37212829 -64167692 - AluJo SINE Alu -31 281 1 2626 155 109 71 chr15 37212829 37213248 -64167273 - L1MB8 LINE L1 -235 5943 5484 1879 159 0 13 chr15 37213248 37213556 -64166965 - AluJb SINE Alu -8 304 1 2626 155 109 71 chr15 37213556 37213615 -64166906 - L1MB8 LINE L1 -694 5484 5429 2168 117 0 0 chr15 37213615 37213924 -64166597 - AluSc SINE Alu 0 309 1 352 130 0 0 chr15 37213930 37213984 -64166537 - Alu SINE Alu -2 300 247 2131 91 34 0 chr15 37214016 37214313 -64166208 - AluSc SINE Alu -2 307 1 25 65 0 0 chr15 37214354 37214400 -64166121 + AT_rich Low_complexity Low_complexity 1 46 0 195 121 52 35 chr15 37214576 37214634 -64165887 + A-rich Low_complexity Low_complexity 2 60 0 306 0 0 0 chr15 37214708 37214742 -64165779 + (TG)n Simple_repeat Simple_repeat 2 35 0 205 206 16 16 chr15 37214847 37214910 -64165611 + CT-rich Low_complexity Low_complexity 1 63 0 * 254 60 45 75 chr15 37214897 37214964 -64165557 + (TTCCC)n Simple_repeat Simple_repeat 1 65 0 726 212 95 0 chr15 37214966 37215103 -64165418 - FAM SINE Alu -35 150 1 1828 158 0 0 chr15 37215141 37215426 -64165095 + AluSx SINE Alu 9 293 -19 239 237 0 0 chr15 37215619 37215657 -64164864 + AluJ/monomer SINE Alu 1 38 -264 1577 171 73 123 chr15 37216143 37216844 -64163677 - L1MC5 LINE L1 -76 7885 7220 350 319 35 43 chr15 37216983 37217124 -64163397 - MLT1H LTR MaLR -241 308 169 2057 123 0 0 chr15 37217207 37217507 -64163014 + AluSx SINE Alu 1 300 -12 887 151 0 0 chr15 37217517 37217656 -64162865 + AluSq/x SINE Alu 1 139 -174 2002 135 0 3 chr15 37217657 37217960 -64162561 + AluSq SINE Alu 1 302 -11 1655 127 22 19 chr15 37218267 37218535 -64161986 - AluSx SINE Alu -10 302 34 23 54 0 0 chr15 37218555 37218592 -64161929 + AT_rich Low_complexity Low_complexity 1 37 0 926 151 0 7 chr15 37218670 37218822 -64161699 - AluJb SINE Alu -161 151 1 2168 91 3 7 chr15 37218829 37219125 -64161396 - AluSx SINE Alu -17 295 1 331 191 15 0 chr15 37219131 37219199 -64161322 - L1MC/D LINE L1 -1988 5820 5752 2560 24 0 0 chr15 37219947 37220238 -64160283 - AluYa5 SINE Alu 0 311 21 291 163 0 0 chr15 37221110 37221153 -64159368 + Alu SINE Alu 1 43 -259 206 32 32 0 chr15 37221153 37221184 -64159337 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2185 97 30 0 chr15 37221189 37221489 -64159032 - AluSg SINE Alu -1 309 1 2219 113 0 0 chr15 37221497 37221808 -64158713 - AluSq SINE Alu -2 311 1 1309 173 10 51 chr15 37221808 37221986 -64158535 - AluJo SINE Alu 0 312 149 2352 67 0 25 chr15 37221986 37222302 -64158219 - AluY SINE Alu -3 308 1 1309 173 10 51 chr15 37222302 37222418 -64158103 - AluJo SINE Alu -163 149 30 2227 71 3 0 chr15 37222426 37222733 -64157788 - AluY SINE Alu 0 308 1 711 211 0 8 chr15 37222744 37222877 -64157644 - FLAM_C SINE Alu -1 132 1 292 191 0 0 chr15 37222879 37222926 -64157595 - Alu SINE Alu -17 285 239 804 129 0 71 chr15 37223027 37223167 -64157354 + AluSq SINE Alu 138 267 -46 332 245 101 82 chr15 37223173 37223332 -64157189 + MIR3 SINE MIR 35 196 -12 814 199 13 0 chr15 37224004 37224160 -64156361 - AluJb SINE Alu -18 294 137 1797 125 0 68 chr15 37224160 37224481 -64156040 - AluJb SINE Alu -2 310 12 213 253 0 108 chr15 37224973 37225056 -64155465 - MIR3 SINE MIR -54 154 81 29 78 0 0 chr15 37225692 37225756 -64154765 + GC_rich Low_complexity Low_complexity 1 64 0 23 86 0 0 chr15 37225867 37225925 -64154596 + GC_rich Low_complexity Low_complexity 1 58 0 32 26 0 0 chr15 37225976 37226015 -64154506 + GC_rich Low_complexity Low_complexity 1 39 0 207 200 0 33 chr15 37226308 37226368 -64154153 + G-rich Low_complexity Low_complexity 4 61 0 204 97 0 0 chr15 37228266 37228297 -64152224 + (CCTG)n Simple_repeat Simple_repeat 1 31 0 1583 91 5 0 chr15 37229224 37229433 -64151088 - AluSq SINE Alu -101 212 3 1188 183 23 143 chr15 37229645 37229783 -64150738 + AluYb8 SINE Alu 1 154 -154 1700 121 0 4 chr15 37229783 37230022 -64150499 + AluSx SINE Alu 8 245 -67 1188 183 23 143 chr15 37230022 37230233 -64150288 + AluYb8 SINE Alu 154 308 0 262 267 57 19 chr15 37231343 37231448 -64149073 - MIR SINE MIR -77 131 23 181 0 0 65 chr15 37231772 37231803 -64148718 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2329 95 0 0 chr15 37231860 37232165 -64148356 - AluSc SINE Alu -4 305 1 220 203 101 38 chr15 37232473 37232552 -64147969 - MIR SINE MIR -48 214 131 283 318 27 61 chr15 37232596 37232632 -64147889 + MER5A DNA MER1_type 43 79 -110 2219 107 0 3 chr15 37232632 37232941 -64147580 + AluSx SINE Alu 1 308 -4 283 318 27 61 chr15 37232941 37233052 -64147469 + MER5A DNA MER1_type 79 185 -4 192 326 87 0 chr15 37233055 37233147 -64147374 - MIR SINE MIR -146 116 17 205 200 0 18 chr15 37234168 37234223 -64146298 + C-rich Low_complexity Low_complexity 3 56 0 2034 108 0 0 chr15 37238216 37238493 -64142028 - AluSx SINE Alu -16 296 20 2169 95 7 0 chr15 37238503 37238797 -64141724 - AluSp SINE Alu -17 296 1 195 256 23 70 chr15 37238830 37238916 -64141605 + MIR3 SINE MIR 86 167 -41 324 364 27 81 chr15 37239591 37239888 -64140633 + L2 LINE L2 2959 3239 -33 1853 115 39 0 chr15 37240194 37240514 -64140007 + AluSx SINE Alu 1 331 0 467 169 0 0 chr15 37240720 37240791 -64139730 - AluSp/q SINE Alu -17 296 226 366 237 25 6 chr15 37241370 37241460 -64139061 - MER5A DNA MER1_type -48 141 43 1277 135 49 69 chr15 37241462 37241487 -64139034 - L1MA8 LINE L1 -5 6286 6262 2222 90 0 3 chr15 37241487 37241777 -64138744 + AluSg SINE Alu 1 289 -21 1277 135 49 69 chr15 37241777 37241914 -64138607 - L1MA8 LINE L1 -29 6262 6130 2242 93 0 3 chr15 37241914 37242214 -64138307 - AluSg SINE Alu -11 299 1 1277 135 49 69 chr15 37242214 37242354 -64138167 - L1MA8 LINE L1 -161 6130 5989 2125 103 7 0 chr15 37242367 37242668 -64137853 - AluSq SINE Alu -10 303 1 309 219 41 0 chr15 37242668 37242741 -64137780 - MER5A DNA MER1_type -113 76 1 229 203 0 16 chr15 37243078 37243142 -64137379 + (CCG)n Simple_repeat Simple_repeat 2 64 0 1466 57 0 0 chr15 37243378 37243554 -64136967 - AluY SINE Alu -135 176 1 594 171 23 23 chr15 37243554 37243683 -64136838 - L1MC5 LINE L1 -842 7119 6991 335 130 0 0 chr15 37243705 37243751 -64136770 + FLAM SINE Alu 76 121 -12 1681 130 22 19 chr15 37243902 37244172 -64136349 - AluSx SINE Alu -8 304 34 23 54 0 0 chr15 37244192 37244229 -64136292 + AT_rich Low_complexity Low_complexity 1 37 0 928 153 0 7 chr15 37244307 37244457 -64136064 - AluJb SINE Alu -161 151 3 2181 97 3 7 chr15 37244463 37244763 -64135758 - AluSx SINE Alu -13 299 1 318 191 15 0 chr15 37244769 37244837 -64135684 - L1MC5 LINE L1 -1988 5820 5752 2342 87 0 0 chr15 37245584 37245896 -64134625 - AluSx SINE Alu 0 312 1 1309 173 10 51 chr15 37245896 37246074 -64134447 - AluJo SINE Alu 0 312 149 2352 67 0 25 chr15 37246074 37246390 -64134131 - AluY SINE Alu -3 308 1 1309 173 10 51 chr15 37246390 37246506 -64134015 - AluJo SINE Alu -163 149 30 2227 71 3 0 chr15 37246514 37246821 -64133700 - AluY SINE Alu 0 308 1 737 203 0 8 chr15 37246832 37246965 -64133556 - FLAM_C SINE Alu -1 132 1 1547 181 0 44 chr15 37246967 37247152 -64133369 - AluJo SINE Alu -27 285 116 2103 109 23 0 chr15 37247152 37247454 -64133067 + AluY SINE Alu 1 309 -2 1547 181 0 44 chr15 37247454 37247566 -64132955 - AluJo SINE Alu -196 116 1 214 284 98 20 chr15 37248383 37248485 -64132036 + MIR SINE MIR 41 150 -58 * 274 192 39 0 chr15 37248484 37248536 -64131985 - L2 LINE L2 -2 3311 3258 578 176 0 0 chr15 37248536 37248627 -64131894 - FAM SINE Alu -78 107 17 187 294 0 0 chr15 37248762 37248813 -64131708 - MER5B DNA MER1_type -127 51 1 2055 116 10 0 chr15 37251214 37251506 -64129015 + AluSx SINE Alu 2 296 -16 2095 103 10 3 chr15 37251508 37251809 -64128712 + AluSx SINE Alu 1 303 -9 279 294 184 0 chr15 37251827 37251936 -64128585 + L2 LINE L2 3182 3310 -3 23 68 0 0 chr15 37252665 37252709 -64127812 + GC_rich Low_complexity Low_complexity 1 44 0 2007 108 24 0 chr15 37253521 37253809 -64126712 + AluY SINE Alu 15 309 -2 672 184 0 0 chr15 37253811 37253920 -64126601 - AluJo/FLAM SINE Alu -202 110 2 214 284 98 20 chr15 37254738 37254840 -64125681 + MIR SINE MIR 41 150 -58 * 274 192 39 0 chr15 37254839 37254891 -64125630 - L2 LINE L2 -2 3311 3258 578 176 0 0 chr15 37254891 37254982 -64125539 - FAM SINE Alu -78 107 17 187 294 0 0 chr15 37255117 37255168 -64125353 - MER5B DNA MER1_type -127 51 1 2055 116 10 0 chr15 37257569 37257861 -64122660 + AluSx SINE Alu 2 296 -16 2190 118 0 6 chr15 37257863 37258176 -64122345 + AluSx SINE Alu 1 311 -1 180 319 8 67 chr15 37259101 37259220 -64121301 + MIR SINE MIR 40 151 -111 2033 119 0 10 chr15 37259324 37259626 -64120895 + AluSq SINE Alu 2 300 -13 186 103 0 0 chr15 37261018 37261047 -64119474 + (TG)n Simple_repeat Simple_repeat 1 29 0 2166 104 0 0 chr15 37261542 37261830 -64118691 + AluSx SINE Alu 2 289 -23 1748 170 14 0 chr15 37263619 37263907 -64116614 - AluJb SINE Alu -20 292 1 298 244 70 12 chr15 37264827 37264913 -64115608 + MIR SINE MIR 50 140 -122 767 145 0 0 chr15 37265437 37265554 -64114967 + FLAM_C SINE Alu 1 117 -16 2209 117 0 0 chr15 37265567 37265876 -64114645 - AluSg SINE Alu -1 309 1 522 128 76 7 chr15 37267591 37267881 -64112640 + (CA)n Simple_repeat Simple_repeat 1 310 0 1726 167 0 10 chr15 37268258 37268563 -64111958 - AluJb SINE Alu -6 306 5 1863 147 7 0 chr15 37268620 37268912 -64111609 + AluSx SINE Alu 1 294 -18 1778 169 0 22 chr15 37268971 37269290 -64111231 + AluJo SINE Alu 1 312 0 1508 175 36 26 chr15 37269399 37269708 -64110813 + AluJo SINE Alu 1 312 0 1954 114 17 17 chr15 37269784 37270083 -64110438 + AluSx SINE Alu 1 299 -13 1148 165 0 5 chr15 37270565 37270771 -64109750 + AluY SINE Alu 105 309 -2 318 217 47 66 chr15 37270856 37270962 -64109559 + L1MC5 LINE L1 7810 7913 -48 2166 111 7 0 chr15 37270962 37271268 -64109253 + AluSg SINE Alu 2 309 -1 2177 107 0 0 chr15 37271291 37271581 -64108940 + AluSg SINE Alu 1 290 -20 573 221 0 0 chr15 37271701 37271846 -64108675 + (CA)n Simple_repeat Simple_repeat 2 146 0 2140 127 0 0 chr15 37272268 37272576 -64107945 - AluJb SINE Alu -2 310 3 213 139 0 0 chr15 37273185 37273228 -64107293 + (CA)n Simple_repeat Simple_repeat 1 43 0 2168 95 0 14 chr15 37273508 37273804 -64106717 - AluSg SINE Alu -2 308 17 296 116 0 11 chr15 37273835 37273890 -64106631 + Alu SINE Alu 1 40 -259 774 71 0 0 chr15 37273890 37273989 -64106532 + AluSg/x SINE Alu 205 303 -6 2123 137 0 0 chr15 37274569 37275011 -64105510 + AluSq SINE Alu 1 442 0 242 147 59 0 chr15 37275291 37275359 -64105162 - L1M4 LINE L1 -1111 5035 4964 24 0 0 0 chr15 37275544 37275568 -64104953 + AT_rich Low_complexity Low_complexity 1 24 0 269 189 34 54 chr15 37277272 37277420 -64103101 + (TATAA)n Simple_repeat Simple_repeat 3 147 0 21 0 0 0 chr15 37277478 37277499 -64103022 + AT_rich Low_complexity Low_complexity 1 21 0 3131 84 22 19 chr15 37277646 37277710 -64102811 + MER41A LTR ERV1 90 152 -402 1755 131 10 32 chr15 37277710 37278022 -64102499 - AluSx SINE Alu -7 305 1 3131 84 22 19 chr15 37278022 37278419 -64102102 + MER41A LTR ERV1 152 552 -2 341 186 0 0 chr15 37278419 37278478 -64102043 - LTR8 LTR ERV1 0 691 633 22546 227 21 35 chr15 37278509 37283730 -64096791 + HERVI LTR ERV1 2637 7784 -1 1365 224 114 39 chr15 37283733 37284097 -64096424 + LTR10A LTR ERV1 1 413 -196 2152 71 3 20 chr15 37284097 37284393 -64096128 + AluY SINE Alu 21 311 0 1365 224 114 39 chr15 37284393 37284518 -64096003 + LTR10A LTR ERV1 413 527 -82 4878 68 3 0 chr15 37284518 37285154 -64095367 - LTR8 LTR ERV1 -53 638 1 2145 104 0 3 chr15 37285227 37285526 -64094995 - AluSc SINE Alu -11 298 1 1812 162 3 3 chr15 37285589 37285892 -64094629 - AluJb SINE Alu -9 303 1 3620 150 45 13 chr15 37285953 37286075 -64094446 - MER41B LTR ERV1 0 635 518 2061 139 0 0 chr15 37286075 37286384 -64094137 + AluSx SINE Alu 1 309 -3 3620 150 45 13 chr15 37286384 37286712 -64093809 - MER41B LTR ERV1 -117 518 157 2110 109 3 3 chr15 37286712 37287015 -64093506 - AluSc SINE Alu -6 303 1 3620 150 45 13 chr15 37287015 37287178 -64093343 - MER41B LTR ERV1 -478 157 1 1750 95 8 4 chr15 37287213 37287454 -64093067 - AluSx SINE Alu -59 253 12 1877 133 11 0 chr15 37287470 37287748 -64092773 - AluSg SINE Alu -1 309 29 1653 131 109 4 chr15 37288479 37288753 -64091768 - AluSc SINE Alu -6 303 1 2271 90 7 0 chr15 37289088 37289387 -64091134 - AluSp SINE Alu -12 301 1 2416 67 0 0 chr15 37289395 37289695 -64090826 - AluY SINE Alu -11 300 1 214 350 0 21 chr15 37290420 37290563 -64089958 + GA-rich Low_complexity Low_complexity 5 144 0 337 137 0 0 chr15 37290594 37290645 -64089876 - Alu SINE Alu -12 290 240 25 65 0 0 chr15 37291310 37291356 -64089165 + GC_rich Low_complexity Low_complexity 1 46 0 2072 116 10 0 chr15 37293924 37294226 -64086295 + AluSp SINE Alu 2 306 -7 2216 86 0 41 chr15 37294363 37294678 -64085843 + AluSg1 SINE Alu 1 302 -7 862 180 67 17 chr15 37294773 37294951 -64085570 + MER5A DNA MER1_type 3 189 0 1822 175 0 3 chr15 37294991 37295294 -64085227 + AluSx SINE Alu 1 302 -10 2185 92 0 29 chr15 37295294 37295609 -64084912 + AluSg SINE Alu 1 306 -4 1913 134 11 3 chr15 37295810 37296094 -64084427 + AluJb SINE Alu 1 286 -26 516 111 0 0 chr15 37296094 37296175 -64084346 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 694 196 0 0 chr15 37296176 37296288 -64084233 - FLAM_A SINE Alu -30 112 1 2001 119 14 0 chr15 37297673 37297966 -64082555 + AluSx SINE Alu 1 297 -15 1099 122 0 53 chr15 37297966 37298155 -64082366 + AluSg/x SINE Alu 132 310 0 1458 179 17 14 chr15 37298172 37298463 -64082058 - AluJo SINE Alu -20 292 1 2206 88 7 16 chr15 37298476 37298782 -64081739 - AluSq SINE Alu -9 304 2 2099 124 3 0 chr15 37299207 37299506 -64081015 - AluSx SINE Alu -12 300 1 442 273 61 24 chr15 37300597 37300762 -64079759 + MIR SINE MIR 90 260 -2 207 304 78 49 chr15 37300792 37300894 -64079627 - MIR SINE MIR -56 206 102 2331 71 3 0 chr15 37301661 37301958 -64078563 - AluSp SINE Alu -11 302 5 2028 90 20 27 chr15 37303746 37304046 -64076475 - AluSg SINE Alu -12 298 1 24 32 0 0 chr15 37304569 37304600 -64075921 + AT_rich Low_complexity Low_complexity 1 31 0 2109 133 0 0 chr15 37304600 37304909 -64075612 - AluSg SINE Alu -1 309 1 2235 97 0 7 chr15 37304916 37305226 -64075295 - AluSg1 SINE Alu -1 308 1 1956 144 3 0 chr15 37305229 37305521 -64075000 - AluSx SINE Alu -19 293 1 1601 157 10 34 chr15 37305531 37305825 -64074696 - AluJb SINE Alu -25 287 1 2042 95 4 0 chr15 37308344 37308617 -64071904 + AluSc SINE Alu 18 291 -18 274 154 15 15 chr15 37309499 37309564 -64070957 + GA-rich Low_complexity Low_complexity 6 70 0 252 0 0 0 chr15 37310874 37310902 -64069619 + (TA)n Simple_repeat Simple_repeat 2 29 0 1654 101 0 0 chr15 37310902 37311129 -64069392 - AluSg/x SINE Alu 0 310 84 1597 149 0 53 chr15 37311139 37311296 -64069225 - AluJo SINE Alu -25 287 150 2204 87 0 13 chr15 37311296 37311596 -64068925 - AluSc SINE Alu -13 296 1 1597 149 0 53 chr15 37311596 37311719 -64068802 - AluJo SINE Alu -162 150 22 206 228 35 53 chr15 37311835 37311949 -64068572 + (TATAG)n Simple_repeat Simple_repeat 5 116 0 1876 125 4 7 chr15 37311998 37312279 -64068242 + AluSx SINE Alu 27 306 -6 368 253 52 58 chr15 37312309 37312483 -64068038 + MIR SINE MIR 34 206 -56 1905 148 13 3 chr15 37312483 37312786 -64067735 + AluSx SINE Alu 1 306 -6 1187 146 8 79 chr15 37312786 37312847 -64067674 + AluJb SINE Alu 85 149 -163 2001 96 20 33 chr15 37312847 37313149 -64067372 + AluSq SINE Alu 1 298 -15 2029 93 47 0 chr15 37313153 37313431 -64067090 + AluSq SINE Alu 6 296 -17 2184 116 0 0 chr15 37313431 37313732 -64066789 + AluSp SINE Alu 1 301 -12 1187 146 8 79 chr15 37313732 37313904 -64066617 + AluJb SINE Alu 150 307 -5 209 151 0 94 chr15 37313908 37313961 -64066560 + MIR SINE MIR 203 250 -12 554 230 74 97 chr15 37315082 37315339 -64065182 + MIR SINE MIR 11 261 -1 392 149 0 0 chr15 37316044 37316111 -64064410 + MIR SINE MIR 79 145 -117 247 206 87 65 chr15 37316748 37316840 -64063681 - MER102a DNA MER1_type -16 314 221 253 202 0 34 chr15 37316868 37316895 -64063626 + L1M4 LINE L1 4300 4326 -1820 2261 93 0 3 chr15 37316895 37317195 -64063326 + AluSq SINE Alu 1 299 -14 253 202 0 34 chr15 37317195 37317256 -64063265 + L1M4 LINE L1 4326 4385 -1761 2230 68 0 0 chr15 37317256 37317535 -64062986 + AluY SINE Alu 1 279 -32 216 0 0 0 chr15 37317538 37317562 -64062959 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 596 188 10 0 chr15 37317565 37317661 -64062860 - FRAM SINE Alu -31 145 49 451 211 49 14 chr15 37317924 37318066 -64062455 - L1MD3 LINE L1 -8 7987 7841 751 168 85 93 chr15 37318079 37318412 -64062109 + L1ME1 LINE L1 5802 6109 -57 1583 167 7 47 chr15 37318412 37318573 -64061948 - AluJb SINE Alu -24 288 143 2313 74 7 10 chr15 37318573 37318883 -64061638 - AluSq SINE Alu 0 313 5 1583 167 7 47 chr15 37318883 37319021 -64061500 - AluJb SINE Alu -169 143 1 751 168 85 93 chr15 37319021 37319047 -64061474 + L1ME1 LINE L1 6109 6134 -32 477 209 49 49 chr15 37319048 37319211 -64061310 + AluSg SINE Alu 2 164 -146 190 353 38 23 chr15 37320302 37320435 -64060086 - MIR3 SINE MIR -73 135 1 363 44 0 0 chr15 37320448 37320493 -64060028 + (TG)n Simple_repeat Simple_repeat 1 45 0 180 77 0 0 chr15 37320492 37320518 -64060003 + (CG)n Simple_repeat Simple_repeat 2 27 0 * 825 97 0 83 chr15 37322268 37322413 -64058108 + FLAM_A SINE Alu 1 133 0 213 39 0 0 chr15 37324573 37324599 -64055922 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 589 256 24 76 chr15 37325469 37325719 -64054802 - AluSg/x SINE Alu -5 305 69 1865 139 6 65 chr15 37325940 37326264 -64054257 - AluSx SINE Alu -5 307 3 2148 249 99 33 chr15 37326514 37326568 -64053953 + MER115 DNA AcHobo 17 66 -627 1980 170 0 19 chr15 37326568 37326886 -64053635 + AluJb SINE Alu 1 312 0 2148 249 99 33 chr15 37326886 37327466 -64053055 + MER115 DNA AcHobo 66 693 0 387 314 86 7 chr15 37327610 37327750 -64052771 - L2 LINE L2 -218 3054 2904 556 240 127 58 chr15 37328298 37328541 -64051980 - L2 LINE L2 -254 3059 2802 1738 151 19 55 chr15 37329713 37330025 -64050496 + AluJo SINE Alu 1 301 -11 1690 189 21 7 chr15 37330025 37330310 -64050211 + AluJo SINE Alu 1 289 -23 1493 150 6 120 chr15 37332412 37332746 -64047775 + AluJo SINE Alu 1 296 -6 25 31 0 0 chr15 37334690 37334722 -64045799 + AT_rich Low_complexity Low_complexity 1 32 0 617 279 16 16 chr15 37334975 37335165 -64045356 - MIR SINE MIR -63 199 10 2123 134 3 0 chr15 37335256 37335555 -64044966 - AluJb SINE Alu -12 300 1 2113 109 38 0 chr15 37336369 37336662 -64043859 + AluSp SINE Alu 1 304 -9 2253 118 3 0 chr15 37336734 37337030 -64043491 - AluSp SINE Alu -16 297 1 1091 88 0 7 chr15 37337030 37337166 -64043355 - AluSq/x SINE Alu -178 135 1 1546 186 16 50 chr15 37337178 37337500 -64043021 - AluJo SINE Alu -1 311 1 532 222 35 53 chr15 37337547 37337718 -64042803 + MIR SINE MIR 28 195 -67 699 135 0 0 chr15 37337722 37337826 -64042695 + FLAM_A SINE Alu 18 121 -21 1993 91 0 16 chr15 37337828 37338132 -64042389 - AluSp SINE Alu 0 334 35 1243 146 16 0 chr15 37338133 37338318 -64042203 - AluJb SINE Alu -120 192 5 2130 129 10 0 chr15 37339877 37340186 -64040335 - AluSx SINE Alu 0 312 1 367 236 146 51 chr15 37340209 37340290 -64040231 + L1ME4a LINE L1 5920 5992 -129 2557 73 0 0 chr15 37340290 37340592 -64039929 - AluY SINE Alu -8 303 2 367 236 146 51 chr15 37340592 37340688 -64039833 + L1ME4a LINE L1 5992 6114 -7 2115 113 37 10 chr15 37340765 37341065 -64039456 + AluSg SINE Alu 1 308 -2 1993 141 0 26 chr15 37341163 37341469 -64039052 - AluSx SINE Alu -14 298 1 1716 146 21 11 chr15 37341469 37341750 -64038771 + AluSx SINE Alu 24 307 -5 2360 96 0 3 chr15 37342082 37342385 -64038136 + AluSx SINE Alu 1 302 -10 259 159 0 0 chr15 37342387 37342431 -64038090 + Alu SINE Alu 1 44 -257 709 229 51 47 chr15 37342475 37342728 -64037793 - L1ME3A LINE L1 -69 6101 5848 1123 148 16 11 chr15 37342756 37342770 -64037751 + AluSq SINE Alu 121 133 -180 1961 103 37 57 chr15 37342770 37343070 -64037451 + AluSg SINE Alu 1 294 -16 1123 148 16 11 chr15 37343070 37343237 -64037284 + AluSq SINE Alu 133 303 -10 1352 151 123 53 chr15 37343384 37343535 -64036986 - AluJo SINE Alu -7 305 166 2179 91 3 17 chr15 37343535 37343833 -64036688 - AluSc SINE Alu -15 294 1 1352 151 123 53 chr15 37343833 37343966 -64036555 - AluJo SINE Alu -146 166 1 221 266 53 80 chr15 37344213 37344326 -64036195 - MIR3 SINE MIR -84 124 15 2069 99 4 0 chr15 37344629 37344892 -64035629 + AluSx SINE Alu 41 304 -8 2356 89 0 29 chr15 37344892 37345205 -64035316 + AluSg SINE Alu 1 304 -6 27 0 0 0 chr15 37345518 37345545 -64034976 + AT_rich Low_complexity Low_complexity 1 27 0 761 230 58 58 chr15 37345679 37345790 -64034731 - MIR SINE MIR -4 258 148 2518 64 3 0 chr15 37345790 37346087 -64034434 - AluSp SINE Alu -15 298 1 761 230 58 58 chr15 37346087 37346232 -64034289 - MIR SINE MIR -113 149 2 1145 185 14 5 chr15 37346336 37346552 -64033969 - MER20 DNA MER1_type -1 218 1 2076 127 13 10 chr15 37346627 37346927 -64033594 + AluSx SINE Alu 1 301 -11 2361 79 0 7 chr15 37347051 37347343 -64033178 + AluY SINE Alu 1 290 -21 197 307 40 40 chr15 37347513 37347614 -64032907 - L2 LINE L2 -15 3298 3198 650 227 130 24 chr15 37348091 37348298 -64032223 + MIR SINE MIR 34 262 0 468 224 31 118 chr15 37348579 37348687 -64031834 + MIR SINE MIR 16 91 -171 2565 58 0 10 chr15 37348687 37348998 -64031523 - AluSq SINE Alu -5 308 1 468 224 31 118 chr15 37348998 37349143 -64031378 + MIR SINE MIR 91 247 -15 236 196 0 71 chr15 37349245 37349301 -64031220 + AluSg/x SINE Alu 117 168 -134 2492 70 3 0 chr15 37349933 37350235 -64030286 - AluSx SINE Alu -9 303 1 257 324 43 22 chr15 37350803 37350942 -64029579 + L2 LINE L2 3170 3311 -2 340 185 31 0 chr15 37350967 37351032 -64029489 - MER5A DNA MER1_type 0 189 123 1795 123 0 0 chr15 37351032 37351267 -64029254 + AluSx SINE Alu 1 235 -77 22 0 0 0 chr15 37351569 37351591 -64028930 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr15 37351638 37351668 -64028853 + AT_rich Low_complexity Low_complexity 1 30 0 2226 95 18 0 chr15 37351735 37352019 -64028502 - AluSq SINE Alu -24 289 1 2377 85 0 0 chr15 37352031 37352326 -64028195 - AluY SINE Alu -16 295 1 352 197 84 0 chr15 37352326 37352397 -64028124 - MER5A DNA MER1_type -87 102 26 925 133 70 0 chr15 37352617 37352760 -64027761 - AluSx SINE Alu -159 153 1 279 217 33 0 chr15 37352760 37352820 -64027701 + MER5A DNA MER1_type 123 184 -5 1639 181 10 34 chr15 37352959 37353257 -64027264 - AluJb SINE Alu -16 296 6 2234 128 0 13 chr15 37353272 37353450 -64027071 - AluSx SINE Alu -2 310 136 2202 112 3 16 chr15 37353450 37353754 -64026767 - AluSq SINE Alu -13 300 1 2234 128 0 13 chr15 37353754 37353888 -64026633 - AluSx SINE Alu -176 136 2 1194 161 0 11 chr15 37354002 37354188 -64026333 - AluJb SINE Alu -11 301 118 1276 199 64 29 chr15 37354217 37354498 -64026023 + AluJo SINE Alu 1 291 -21 2288 108 0 0 chr15 37354498 37354793 -64025728 - AluSq SINE Alu -17 296 2 2329 36 47 4 chr15 37354803 37355081 -64025440 - AluY SINE Alu -21 290 1 3698 168 60 79 chr15 37355085 37355123 -64025398 - L1MC3 LINE L1 -224 7561 7524 210 37 0 0 chr15 37355131 37355158 -64025363 + (TATG)n Simple_repeat Simple_repeat 2 28 0 2084 142 0 0 chr15 37355158 37355445 -64025076 - AluSx SINE Alu -22 290 1 1818 164 7 17 chr15 37355445 37355743 -64024778 - AluJo SINE Alu -17 295 1 3698 168 60 79 chr15 37355743 37355879 -64024642 - L1MC3 LINE L1 -260 7525 7388 2059 133 36 7 chr15 37355879 37356181 -64024340 + AluSx SINE Alu 1 311 -1 3698 168 60 79 chr15 37356181 37356562 -64023959 - L1MC3 LINE L1 -397 7388 7001 2118 115 7 7 chr15 37356562 37356857 -64023664 - AluSx SINE Alu -17 295 1 3698 168 60 79 chr15 37356857 37356920 -64023601 - L1MC3 LINE L1 -784 7001 6938 2043 148 3 16 chr15 37356920 37357230 -64023291 - AluSx SINE Alu -6 306 1 3698 168 60 79 chr15 37357230 37357466 -64023055 - L1MC3 LINE L1 -847 6938 6721 613 188 0 8 chr15 37357466 37357616 -64022905 + FLAM_C SINE Alu 1 149 0 3698 168 60 79 chr15 37357616 37357763 -64022758 - L1MC3 LINE L1 -1064 6721 6573 2517 64 0 0 chr15 37357770 37358065 -64022456 - AluY SINE Alu -16 295 1 227 256 64 0 chr15 37358086 37358164 -64022357 + L1MC5 LINE L1 7701 7783 -178 1753 173 3 10 chr15 37358718 37359030 -64021491 + AluY SINE Alu 1 310 -1 316 217 47 66 chr15 37359115 37359221 -64021300 + L1MC5 LINE L1 7810 7913 -48 2300 111 7 0 chr15 37359221 37359527 -64020994 + AluSg SINE Alu 2 309 -1 2314 107 0 0 chr15 37359550 37359840 -64020681 + AluSg SINE Alu 1 290 -20 573 221 0 0 chr15 37359960 37360105 -64020416 + (CA)n Simple_repeat Simple_repeat 2 146 0 363 308 0 0 chr15 37360548 37360720 -64019801 + A-rich Low_complexity Low_complexity 1 172 0 358 368 18 0 chr15 37360746 37360860 -64019661 + G-rich Low_complexity Low_complexity 4 119 0 306 307 0 0 chr15 37360860 37361057 -64019464 + A-rich Low_complexity Low_complexity 1 197 0 2214 134 0 0 chr15 37361656 37361962 -64018559 - AluJb SINE Alu -4 308 3 213 139 0 0 chr15 37362571 37362614 -64017907 + (CA)n Simple_repeat Simple_repeat 1 43 0 2283 98 0 10 chr15 37362894 37363190 -64017331 - AluSg SINE Alu -2 308 16 2459 91 0 0 chr15 37363975 37364282 -64016239 + AluSg1 SINE Alu 1 307 -2 1997 92 89 0 chr15 37364477 37364758 -64015763 + AluSc SINE Alu 3 308 -1 2155 106 25 0 chr15 37365338 37365621 -64014900 - AluSx SINE Alu -22 290 1 2139 56 0 4 chr15 37365665 37365917 -64014604 - AluY SINE Alu -7 304 54 25 0 0 0 chr15 37365932 37365957 -64014564 + AT_rich Low_complexity Low_complexity 1 25 0 718 169 0 0 chr15 37365964 37366082 -64014439 - FLAM_C SINE Alu -15 118 1 418 274 121 88 chr15 37366268 37366689 -64013832 - L1MEc LINE L1 -2841 3541 831 1072 97 0 0 chr15 37366869 37367003 -64013518 - AluSq/x SINE Alu -178 134 1 23 0 0 0 chr15 37367178 37367201 -64013320 + AT_rich Low_complexity Low_complexity 1 23 0 324 291 6 109 chr15 37367603 37367778 -64012743 + HAL1 LINE L1 1046 1202 -1305 2329 116 0 3 chr15 37367974 37368285 -64012236 - AluSx SINE Alu -2 310 1 920 198 0 0 chr15 37368662 37368824 -64011697 - FAM SINE Alu -13 162 1 2320 121 0 0 chr15 37369051 37369356 -64011165 - AluSg SINE Alu -5 305 1 1242 133 38 5 chr15 37369443 37369653 -64010868 - AluSq SINE Alu -12 301 85 506 194 22 15 chr15 37370481 37370615 -64009906 - AluY SINE Alu -175 136 2 2347 52 10 3 chr15 37370616 37370904 -64009617 - AluY SINE Alu -18 293 4 434 234 22 87 chr15 37370911 37370931 -64009590 - L1MA10 LINE L1 -1 6333 6314 733 222 23 69 chr15 37370931 37371042 -64009479 - L1ME2 LINE L1 -9 6155 6057 1930 165 10 0 chr15 37371042 37371333 -64009188 - AluJb SINE Alu -18 294 1 733 222 23 69 chr15 37371333 37371437 -64009084 - L1ME2 LINE L1 -107 6057 5950 567 278 30 10 chr15 37371512 37371710 -64008811 + AluSg1 SINE Alu 2 203 -106 279 326 106 15 chr15 37372188 37372320 -64008201 - L2 LINE L2 -4 3268 3125 189 0 0 0 chr15 37372324 37372345 -64008176 + (CAATA)n Simple_repeat Simple_repeat 4 24 0 1969 165 0 0 chr15 37372586 37372883 -64007638 + AluSg SINE Alu 1 297 -13 1658 130 19 8 chr15 37373235 37373497 -64007024 + AluSg SINE Alu 46 310 0 665 255 194 29 chr15 37373497 37373898 -64006623 - MLT1H1 LTR MaLR -61 488 1 1449 154 11 148 chr15 37373899 37374021 -64006500 - L1ME2 LINE L1 -207 5957 5820 829 113 0 70 chr15 37374021 37374163 -64006358 - FLAM_C SINE Alu -1 132 1 1449 154 11 148 chr15 37374163 37374371 -64006150 - L1ME2 LINE L1 -344 5820 5707 1802 166 3 10 chr15 37374371 37374661 -64005860 + AluJo SINE Alu 2 289 -23 1449 154 11 148 chr15 37374661 37374795 -64005726 - L1ME2 LINE L1 -457 5707 5556 2069 130 13 3 chr15 37374796 37375096 -64005425 - AluSq SINE Alu -10 303 1 1101 194 0 24 chr15 37375106 37375312 -64005209 - AluJo SINE Alu -24 288 88 1198 162 24 40 chr15 37375316 37375398 -64005123 - L1ME2 LINE L1 -608 5562 5480 2252 118 10 0 chr15 37375398 37375704 -64004817 - AluSq SINE Alu -4 309 1 1198 162 24 40 chr15 37375704 37375868 -64004653 - L1ME2 LINE L1 -690 5480 5320 222 98 122 0 chr15 37376596 37376637 -64003884 + MIR SINE MIR 10 55 -207 2277 110 0 0 chr15 37376642 37376941 -64003580 - AluY SINE Alu -12 299 1 526 88 0 0 chr15 37376965 37377033 -64003488 - U3 snRNA snRNA -149 68 1 2451 90 3 0 chr15 37377094 37377405 -64003116 - AluSp SINE Alu -1 312 1 1237 223 92 3 chr15 37377468 37377608 -64002913 + L1M4 LINE L1 4517 4643 -1503 1509 176 23 12 chr15 37377608 37377864 -64002657 + AluJb SINE Alu 1 259 -53 1237 223 92 3 chr15 37377864 37378051 -64002470 + L1M4 LINE L1 4643 4873 -1273 1426 227 145 39 chr15 37378126 37378589 -64001932 + MLT1F LTR MaLR 31 542 0 477 214 36 0 chr15 37378589 37378701 -64001820 + L1M4 LINE L1 4867 4982 -1164 680 62 0 31 chr15 37378701 37378853 -64001668 - AluY SINE Alu 0 311 197 1278 159 12 123 chr15 37379584 37379735 -64000786 + AluJb SINE Alu 1 167 -135 369 0 0 0 chr15 37379735 37379776 -64000745 + (CA)n Simple_repeat Simple_repeat 2 42 0 2342 88 7 0 chr15 37379776 37380070 -64000451 + AluSg SINE Alu 1 296 -14 1278 159 12 123 chr15 37380070 37380257 -64000264 + AluJb SINE Alu 165 302 0 1361 108 4 82 chr15 37380290 37380522 -63999999 - AluJb SINE Alu -13 299 86 2052 142 0 3 chr15 37380531 37380840 -63999681 - AluSx SINE Alu -4 308 1 892 198 0 0 chr15 37380849 37381031 -63999490 - AluSg/x SINE Alu 0 312 131 1348 118 28 19 chr15 37381639 37381850 -63998671 + AluSq SINE Alu 94 306 -7 213 367 44 0 chr15 37381952 37382042 -63998479 - MER5A DNA MER1_type 0 189 96 21 57 0 0 chr15 37384289 37384324 -63996197 + AT_rich Low_complexity Low_complexity 1 35 0 440 200 36 18 chr15 37384948 37385058 -63995463 - MIR SINE MIR -44 218 107 2058 86 68 0 chr15 37385405 37385685 -63994836 + AluSp SINE Alu 2 300 -13 23 0 0 0 chr15 37385693 37385716 -63994805 + AT_rich Low_complexity Low_complexity 1 23 0 1957 128 31 0 chr15 37385716 37386005 -63994516 - AluSq SINE Alu -14 299 2 909 187 26 0 chr15 37386013 37386168 -63994353 - AluJo SINE Alu -16 296 138 1400 99 0 52 chr15 37386180 37386391 -63994130 - AluSg/x SINE Alu -6 304 105 1138 111 17 39 chr15 37386391 37386572 -63993949 - AluSq SINE Alu -136 177 1 724 188 0 0 chr15 37386577 37386710 -63993811 - AluJo SINE Alu -169 133 1 23 0 0 0 chr15 37386711 37386734 -63993787 + AT_rich Low_complexity Low_complexity 1 23 0 1706 180 7 3 chr15 37386802 37387096 -63993425 + AluJo SINE Alu 1 295 -17 239 282 64 13 chr15 37387235 37387313 -63993208 - L2 LINE L2 -4 3309 3228 1381 156 19 0 chr15 37387449 37387687 -63992834 + AluJo SINE Alu 77 318 0 1301 129 203 21 chr15 37387839 37388125 -63992396 + MER44D DNA MER2_type 2 609 0 642 206 0 0 chr15 37388219 37388345 -63992176 - FLAM_A SINE Alu -3 139 14 2332 96 0 13 chr15 37388361 37388664 -63991857 - AluSp SINE Alu -14 299 1 1893 150 34 57 chr15 37388665 37388808 -63991713 - L1MC3 LINE L1 -7 7778 7633 1532 131 18 134 chr15 37388808 37389144 -63991377 - AluSx SINE Alu -5 297 1 1893 150 34 57 chr15 37389144 37389407 -63991114 - L1MC3 LINE L1 -152 7633 7381 325 82 41 0 chr15 37389545 37389594 -63990927 - L1MC3 LINE L1 -492 7293 7243 1503 264 138 39 chr15 37390014 37390139 -63990382 - L2 LINE L2 -11 3302 3191 2219 100 20 7 chr15 37390139 37390439 -63990082 + AluSx SINE Alu 1 304 -8 1503 264 138 39 chr15 37390439 37390908 -63989613 - L2 LINE L2 -122 3191 2770 1650 101 134 11 chr15 37390908 37391176 -63989345 + AluY SINE Alu 1 301 0 1503 264 138 39 chr15 37391176 37391581 -63988940 - L2 LINE L2 -543 2770 2193 818 234 9 35 chr15 37391581 37391808 -63988713 + AluJb SINE Alu 85 305 -7 971 125 0 0 chr15 37392246 37392382 -63988139 - AluSg/x SINE Alu -13 299 164 1073 139 0 0 chr15 37392463 37392614 -63987907 - AluSq/x SINE Alu -161 151 1 860 269 142 12 chr15 37392677 37393202 -63987319 + L2 LINE L2 2709 3313 0 433 237 43 0 chr15 37393210 37393303 -63987218 - MIR SINE MIR -87 175 79 183 80 0 0 chr15 37393391 37393416 -63987105 + (TATG)n Simple_repeat Simple_repeat 4 28 0 394 206 49 0 chr15 37393946 37394048 -63986473 + AluSq/x SINE Alu 5 111 -192 535 156 33 0 chr15 37394151 37394241 -63986280 + Tigger3(Golem) DNA MER2_type 148 240 -2789 231 155 87 68 chr15 37394281 37394384 -63986137 + Tigger3(Golem) DNA MER2_type 203 307 -2722 746 176 0 0 chr15 37394417 37394536 -63985985 - FRAM SINE Alu -20 156 38 1186 160 0 10 chr15 37394553 37394781 -63985740 - AluSg/x SINE Alu 0 308 83 434 121 15 0 chr15 37394781 37394847 -63985674 - AluSg/x SINE Alu -62 247 181 355 102 0 51 chr15 37394848 37394907 -63985614 - AluY SINE Alu -169 132 77 1318 150 5 9 chr15 37394908 37395121 -63985400 - AluSx SINE Alu -100 212 1 521 151 35 12 chr15 37395128 37395214 -63985307 - MER2 DNA MER2_type -257 88 1 181 281 58 50 chr15 37395361 37395482 -63985039 - L2 LINE L2 -2941 373 252 1974 102 49 11 chr15 37396021 37396305 -63984216 - AluSx SINE Alu -17 295 1 2220 108 0 3 chr15 37396305 37396602 -63983919 - AluSx SINE Alu -3 309 14 22 0 0 0 chr15 37396616 37396638 -63983883 + AT_rich Low_complexity Low_complexity 1 22 0 1923 144 7 20 chr15 37396645 37396944 -63983577 - AluJo SINE Alu -17 295 1 599 230 20 7 chr15 37396949 37397101 -63983420 + MIR SINE MIR 67 220 -42 189 107 0 0 chr15 37397245 37397273 -63983248 + (T)n Simple_repeat Simple_repeat 1 28 0 274 287 0 23 chr15 37397394 37397481 -63983040 + CT-rich Low_complexity Low_complexity 3 87 0 2396 84 0 13 chr15 37397730 37398040 -63982481 - AluY SINE Alu -5 306 1 2232 110 3 0 chr15 37398719 37399009 -63981512 - AluSg SINE Alu -19 291 1 3291 183 38 8 chr15 37399018 37399680 -63980841 - L1MB8 LINE L1 -1 6177 5496 2239 117 0 0 chr15 37399680 37399980 -63980541 - AluSc SINE Alu -9 300 1 434 281 66 29 chr15 37400001 37400243 -63980278 - AluJo SINE Alu -24 288 38 431 119 0 0 chr15 37401001 37401060 -63979461 - AluS SINE Alu -249 60 2 557 247 30 12 chr15 37401060 37401226 -63979295 - L1MB8 LINE L1 -1036 5110 4942 256 170 38 0 chr15 37401250 37401303 -63979218 - L1MB8 LINE L1 -1186 4960 4906 841 134 0 15 chr15 37401430 37401564 -63978957 + FLAM_C SINE Alu 11 142 -1 1940 125 30 23 chr15 37401567 37401870 -63978651 + AluSx SINE Alu 1 305 -7 311 336 30 15 chr15 37401907 37402038 -63978483 - MIR3 SINE MIR -9 199 67 4380 173 50 20 chr15 37402051 37402501 -63978020 - Cheshire DNA MER1_type 0 2420 1985 2095 112 21 0 chr15 37402501 37402787 -63977734 + AluSx SINE Alu 1 292 -20 4380 173 50 20 chr15 37402787 37403304 -63977217 - Cheshire DNA MER1_type -435 1985 1424 890 211 14 14 chr15 37403310 37403528 -63976993 - Cheshire DNA MER1_type -1569 851 634 1744 117 95 11 chr15 37403533 37403807 -63976714 - AluSx SINE Alu -6 306 10 680 121 0 0 chr15 37403810 37403901 -63976620 + AluSg/x SINE Alu 190 280 -32 316 229 12 24 chr15 37403920 37404003 -63976518 + Tigger5 DNA MER2_type 2242 2323 0 235 286 14 14 chr15 37404296 37404366 -63976155 - Charlie4 DNA MER1_type -4 1957 1888 245 314 86 19 chr15 37405302 37405407 -63975114 - L2 LINE L2 -4 3268 3157 608 219 104 26 chr15 37405409 37405601 -63974920 + MIR SINE MIR 5 211 -51 769 303 121 26 chr15 37405612 37406222 -63974299 - L2 LINE L2 -109 3204 2527 2263 102 7 3 chr15 37406295 37406588 -63973933 + AluSg1 SINE Alu 1 294 -15 2189 99 0 3 chr15 37406862 37407174 -63973347 - AluSx SINE Alu 0 311 1 1201 180 13 42 chr15 37407324 37407563 -63972958 - AluJo SINE Alu -52 260 29 205 247 136 12 chr15 37407712 37407793 -63972728 + L2 LINE L2 3214 3304 -9 2306 103 0 6 chr15 37408004 37408316 -63972205 + AluSx SINE Alu 1 310 -2 1289 131 5 40 chr15 37408437 37408659 -63971862 + AluJo SINE Alu 95 308 -4 815 196 89 13 chr15 37409575 37409733 -63970788 - AluJo SINE Alu -142 170 1 1219 149 128 79 chr15 37409942 37410084 -63970437 + MER2 DNA MER2_type 1 135 -209 2125 127 19 7 chr15 37410084 37410392 -63970129 - AluSx SINE Alu 0 312 1 1219 149 128 79 chr15 37410392 37410577 -63969944 + MER2 DNA MER2_type 135 344 0 237 265 118 0 chr15 37410883 37410951 -63969570 - L2 LINE L2 0 3272 3197 183 347 84 0 chr15 37411060 37411155 -63969366 - L2 LINE L2 -192 3080 2978 328 40 40 0 chr15 37411238 37411288 -63969233 + (TC)n Simple_repeat Simple_repeat 1 52 0 1411 164 0 68 chr15 37411288 37411568 -63968953 - AluJo SINE Alu -39 273 13 1682 146 13 62 chr15 37411690 37411999 -63968522 - AluJo SINE Alu -18 294 1 2344 105 0 6 chr15 37412261 37412575 -63967946 - AluSx SINE Alu 0 312 1 183 42 0 0 chr15 37412590 37412614 -63967907 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1682 126 95 4 chr15 37418392 37418690 -63961831 - AluSx SINE Alu 0 322 1 1559 160 94 25 chr15 37420312 37420587 -63959934 - AluJb SINE Alu -18 294 1 778 120 58 10 chr15 37420607 37420798 -63959723 - L1MB7 LINE L1 -16 6168 5894 1149 188 96 32 chr15 37420832 37421114 -63959407 - AluJo SINE Alu -2 300 1 755 173 20 20 chr15 37421370 37421520 -63959001 + L1PA16 LINE L1 6015 6164 -2 590 259 135 82 chr15 37421534 37422121 -63958400 - L1MC4a LINE L1 -1893 5915 5298 2120 122 3 0 chr15 37422167 37422461 -63958060 - AluSx SINE Alu -13 299 5 817 176 0 0 chr15 37422474 37422599 -63957922 - AluSq/x SINE Alu -187 125 1 2046 155 0 0 chr15 37422718 37423022 -63957499 - AluSx SINE Alu -7 305 2 324 163 0 2 chr15 37425128 37425185 -63955336 + MER2 DNA MER2_type 6 61 -178 780 194 184 0 chr15 37425210 37425411 -63955110 + L1MA9 LINE L1 5815 6052 -260 2439 52 0 3 chr15 37425435 37425725 -63954796 - AluY SINE Alu -22 289 1 388 235 0 0 chr15 37425975 37426056 -63954465 - MER2 DNA MER2_type -264 81 1 2302 91 0 16 chr15 37426239 37426548 -63953973 - AluSx SINE Alu -8 304 1 1653 203 3 3 chr15 37427078 37427374 -63953147 - AluJb SINE Alu -16 296 1 459 207 11 0 chr15 37427662 37427749 -63952772 + MER58 DNA MER1_type 128 2420 0 225 0 0 0 chr15 37427786 37427811 -63952710 + (CA)n Simple_repeat Simple_repeat 1 25 0 2225 135 0 0 chr15 37428125 37428437 -63952084 - AluSx SINE Alu 0 312 1 2315 114 0 6 chr15 37428449 37428764 -63951757 - AluSq SINE Alu 0 313 1 2026 130 7 0 chr15 37428825 37429109 -63951412 - AluSx SINE Alu -26 286 1 1946 160 3 7 chr15 37429117 37429417 -63951104 - AluSx SINE Alu -13 299 1 2276 107 0 3 chr15 37429429 37429737 -63950784 - AluSc SINE Alu -2 307 1 506 274 46 6 chr15 37429956 37430131 -63950390 - L1ME LINE L1 -400 5762 5581 520 260 62 44 chr15 37430134 37430361 -63950160 + L1M4 LINE L1 4797 5027 -1119 230 220 73 18 chr15 37430419 37430528 -63949993 - L1MB8 LINE L1 0 6178 6064 467 266 79 14 chr15 37431212 37431351 -63949170 - L2 LINE L2 -4 3268 3121 381 121 0 15 chr15 37431453 37431519 -63949002 + L1PA8 LINE L1 6100 6164 -8 1565 166 30 30 chr15 37431568 37431869 -63948652 + AluJo SINE Alu 1 301 -11 686 184 0 50 chr15 37432073 37432214 -63948307 + AluJb SINE Alu 162 295 -17 273 274 68 14 chr15 37432237 37432383 -63948138 + HAL1 LINE L1 1383 1536 -971 337 304 13 59 chr15 37432552 37432654 -63947867 + HAL1 LINE L1 1681 1786 -721 2239 119 0 0 chr15 37432654 37432964 -63947557 + AluSx SINE Alu 1 310 -2 337 304 13 59 chr15 37432964 37433098 -63947423 + HAL1 LINE L1 1786 1906 -601 564 294 86 80 chr15 37433172 37433222 -63947299 + HAL1 LINE L1 1938 1986 -521 2254 108 3 0 chr15 37433222 37433519 -63947002 + AluSp SINE Alu 5 302 -11 564 294 86 80 chr15 37433519 37433685 -63946836 + HAL1 LINE L1 1986 2150 -357 1951 156 7 0 chr15 37433685 37433980 -63946541 + AluJb SINE Alu 1 297 -15 564 294 86 80 chr15 37433980 37434310 -63946211 + HAL1 LINE L1 2150 2488 -19 1211 256 68 96 chr15 37434331 37434998 -63945523 + MER21B LTR ERV1 24 671 -192 313 300 27 18 chr15 37435319 37435429 -63945092 + L1MC/D LINE L1 4745 4855 -1291 250 257 0 14 chr15 37435437 37435511 -63945010 + L1M2 LINE L1 5367 5439 -852 980 230 141 17 chr15 37435679 37435796 -63944725 + L1M3 LINE L1 4501 4602 -1544 2116 112 0 32 chr15 37435796 37436108 -63944413 + AluSg SINE Alu 1 302 -8 980 230 141 17 chr15 37436108 37436351 -63944170 + L1M3 LINE L1 4602 4906 -1240 2236 98 0 10 chr15 37436359 37436654 -63943867 - AluSg SINE Alu -16 294 3 406 159 0 0 chr15 37437411 37437480 -63943041 - AluS SINE Alu -241 69 1 2076 182 88 13 chr15 37437480 37437578 -63942943 + L1M3 LINE L1 4892 4981 -1202 2343 95 0 0 chr15 37437578 37437873 -63942648 + AluSx SINE Alu 6 300 -12 2076 182 88 13 chr15 37437873 37438524 -63941997 + L1M3 LINE L1 4981 5703 -480 1889 139 7 7 chr15 37438524 37438819 -63941702 + AluSx SINE Alu 1 295 -17 2076 182 88 13 chr15 37438819 37438893 -63941628 + L1M3 LINE L1 5703 5770 -413 388 262 81 34 chr15 37438917 37439066 -63941455 - L2 LINE L2 -545 2769 2614 369 303 100 25 chr15 37439100 37439341 -63941180 + L1MC/D LINE L1 5513 5771 -2037 1664 120 102 0 chr15 37439510 37439776 -63940745 + AluSg SINE Alu 1 293 -17 192 324 70 0 chr15 37439901 37439972 -63940549 + L3 LINE CR1 1141 1216 -361 183 304 89 0 chr15 37440082 37440161 -63940360 + L3 LINE CR1 1215 1300 -277 1629 188 3 19 chr15 37440287 37440601 -63939920 + AluJo SINE Alu 1 309 -3 1248 214 38 19 chr15 37440628 37440941 -63939580 + L1ME LINE L1 5458 5776 -386 1610 143 26 75 chr15 37441065 37441372 -63939149 + AluJb SINE Alu 1 292 -20 1006 248 59 8 chr15 37441382 37441773 -63938748 - L1MDa LINE L1 -2048 4492 4082 699 252 79 46 chr15 37442038 37442367 -63938154 + MER58B DNA MER1_type 2 341 0 228 255 78 10 chr15 37442368 37442470 -63938051 - L1MDa LINE L1 -3084 3456 3348 1438 263 79 24 chr15 37442475 37442919 -63937602 - L1MDa LINE L1 -3317 3223 2805 1846 144 25 3 chr15 37442919 37443204 -63937317 - AluSx SINE Alu -21 291 1 1438 263 79 24 chr15 37443204 37443581 -63936940 - L1MDa LINE L1 -3735 2805 2348 992 195 119 50 chr15 37443585 37443928 -63936593 - MLT1A2 LTR MaLR -7 367 1 487 230 14 0 chr15 37444133 37444272 -63936249 + CT-rich Low_complexity Low_complexity 1 141 0 1952 141 0 0 chr15 37444388 37444658 -63935863 - AluSx SINE Alu 0 312 43 2096 146 43 73 chr15 37444723 37445256 -63935265 - L1MB8 LINE L1 0 6178 5662 2781 203 20 62 chr15 37445260 37445407 -63935114 - L1MB8 LINE L1 -1237 4909 4757 1637 168 0 77 chr15 37445407 37445717 -63934804 + AluJo SINE Alu 1 286 -26 2781 203 20 62 chr15 37445717 37446453 -63934068 - L1MB8 LINE L1 -1389 4757 4063 520 276 70 35 chr15 37446495 37446934 -63933587 - L1MDa LINE L1 -4766 1774 1317 207 0 0 0 chr15 37446934 37446957 -63933564 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 520 276 70 35 chr15 37446957 37446977 -63933544 - L1MDa LINE L1 -5223 1317 1299 2075 108 52 3 chr15 37447546 37447832 -63932689 - AluSx SINE Alu -12 300 1 781 151 0 16 chr15 37447848 37447974 -63932547 - AluSq/x SINE Alu -188 124 1 2546 24 0 0 chr15 37447992 37448285 -63932236 - L1PA3 LINE L1 0 6155 5863 1988 116 65 0 chr15 37448970 37449245 -63931276 + AluSg SINE Alu 1 293 -17 819 196 0 40 chr15 37449310 37449359 -63931162 - AluJo/FRAM SINE Alu 0 302 253 2344 52 49 0 chr15 37449359 37449646 -63930875 - AluY SINE Alu -10 301 1 819 196 0 40 chr15 37449646 37449769 -63930752 - AluJo/FRAM SINE Alu -49 253 137 2231 107 3 0 chr15 37450022 37450321 -63930200 - AluSc SINE Alu -9 300 1 297 157 0 101 chr15 37450558 37450647 -63929874 + L1MB5 LINE L1 6086 6165 -9 2106 140 3 0 chr15 37452242 37452550 -63927971 - AluSx SINE Alu -3 309 1 2217 103 0 7 chr15 37452703 37453004 -63927517 - AluY SINE Alu -12 299 1 2203 102 10 0 chr15 37453006 37453299 -63927222 - AluSc SINE Alu -13 296 1 240 226 0 29 chr15 37454010 37454112 -63926409 + T-rich Low_complexity Low_complexity 5 103 0 1966 56 8 16 chr15 37454344 37454596 -63925925 - AluY SINE Alu -23 288 39 2393 74 47 44 chr15 37454763 37454876 -63925645 - L1PA8 LINE L1 -3 6169 6058 2477 59 7 7 chr15 37454876 37455180 -63925341 - AluY SINE Alu -7 304 1 2393 74 47 44 chr15 37455180 37455430 -63925091 - L1PA8 LINE L1 -114 6058 5805 22 0 0 0 chr15 37455970 37455992 -63924529 + AT_rich Low_complexity Low_complexity 1 22 0 220 246 18 0 chr15 37455993 37456050 -63924471 + CT-rich Low_complexity Low_complexity 2 59 0 295 262 30 18 chr15 37456062 37456226 -63924295 - HAL1b LINE L1 -510 838 673 237 238 131 82 chr15 37456357 37456563 -63923958 - MER102a DNA MER1_type -37 293 78 253 85 21 0 chr15 37456945 37456992 -63923529 + Alu SINE Alu 251 298 -4 2475 162 140 58 chr15 37457525 37458198 -63922323 - L1MC3 LINE L1 -11 7774 7047 1427 111 15 0 chr15 37458215 37458413 -63922108 + AluSg/x SINE Alu 101 301 -11 1662 173 9 31 chr15 37458449 37458767 -63921754 - AluJb SINE Alu -1 311 1 517 196 116 0 chr15 37458873 37458985 -63921536 - FLAM_A SINE Alu -8 125 1 2419 76 3 0 chr15 37459032 37459336 -63921185 + AluY SINE Alu 1 305 -6 459 149 0 14 chr15 37459848 37459922 -63920599 - AluS SINE Alu -240 73 1 1599 208 0 14 chr15 37460021 37460305 -63920216 - AluJb SINE Alu -18 294 15 246 243 159 0 chr15 37460413 37460507 -63920014 - MIR SINE MIR -64 144 37 2425 81 0 0 chr15 37460614 37460910 -63919611 + AluSg SINE Alu 1 296 -14 334 202 0 39 chr15 37461006 37461083 -63919438 - FRAM/FAM SINE Alu -103 63 1 2054 139 23 0 chr15 37461229 37461531 -63918990 - AluSx SINE Alu -3 309 1 1140 215 51 0 chr15 37461807 37462044 -63918477 - MLT1E LTR MaLR -3 590 342 495 252 14 28 chr15 37462089 37462232 -63918289 - MLT1E LTR MaLR -452 141 1 2144 116 0 3 chr15 37462971 37463272 -63917249 - AluSq SINE Alu -9 304 5 1783 140 3 14 chr15 37463720 37464005 -63916516 + AluJb SINE Alu 1 282 -30 1550 186 32 0 chr15 37464114 37464393 -63916128 - AluJb SINE Alu -24 288 1 2136 101 7 20 chr15 37464472 37464778 -63915743 - AluSp SINE Alu -5 308 7 581 242 0 8 chr15 37465091 37465223 -63915298 - FLAM_C SINE Alu -1 132 2 2147 134 3 0 chr15 37466353 37466652 -63913869 - AluSx SINE Alu -12 300 1 30 59 0 0 chr15 37466734 37466785 -63913736 + AT_rich Low_complexity Low_complexity 1 51 0 1433 149 90 30 chr15 37466883 37467175 -63913346 - AluJo SINE Alu 0 308 1 782 217 114 0 chr15 37467345 37467529 -63912992 - MER58A DNA MER1_type -1 223 19 222 230 0 68 chr15 37468069 37468143 -63912378 + GA-rich Low_complexity Low_complexity 2 70 0 1303 195 46 19 chr15 37469187 37469449 -63911072 - AluSx SINE Alu -39 273 5 514 107 13 0 chr15 37469582 37469657 -63910864 - AluSg SINE Alu -205 105 30 25 0 0 0 chr15 37469703 37469728 -63910793 + AT_rich Low_complexity Low_complexity 1 25 0 27 0 0 0 chr15 37469891 37469918 -63910603 + AT_rich Low_complexity Low_complexity 1 27 0 2376 68 0 23 chr15 37470404 37470712 -63909809 + AluY SINE Alu 1 301 -10 25 31 0 0 chr15 37471053 37471085 -63909436 + AT_rich Low_complexity Low_complexity 1 32 0 282 233 151 62 chr15 37471204 37471387 -63909134 - MIR SINE MIR -39 223 17 1413 275 103 2 chr15 37471607 37472200 -63908321 + L1M4 LINE L1 3212 3864 -2282 355 62 0 0 chr15 37472221 37472269 -63908252 + Alu SINE Alu 251 298 -4 328 188 0 21 chr15 37472484 37472580 -63907941 + (TA)n Simple_repeat Simple_repeat 1 94 0 1927 251 68 25 chr15 37472944 37473690 -63906831 + L1M4 LINE L1 3923 4700 -1446 1917 157 0 7 chr15 37473697 37473991 -63906530 + AluJb SINE Alu 1 292 -20 718 294 58 48 chr15 37474234 37474491 -63906030 + L1ME3A LINE L1 4561 4814 -1332 1585 157 24 24 chr15 37474491 37474784 -63905737 + AluJo SINE Alu 1 293 -19 1939 123 25 4 chr15 37474788 37475064 -63905457 + AluSx SINE Alu 1 304 0 199 0 0 0 chr15 37475064 37475086 -63905435 + (TAAAA)n Simple_repeat Simple_repeat 2 90 0 718 294 58 48 chr15 37475086 37475360 -63905161 + L1ME3A LINE L1 4816 5103 -1043 2204 125 0 0 chr15 37475424 37475720 -63904801 + AluSx SINE Alu 1 296 -16 1153 272 134 11 chr15 37475744 37476361 -63904160 + L1ME3A LINE L1 5254 5946 -224 2569 62 0 0 chr15 37476361 37476667 -63903854 - AluY SINE Alu -5 306 1 244 237 171 13 chr15 37476770 37476922 -63903599 + L1ME3A LINE L1 5988 6163 -7 1569 189 21 11 chr15 37477665 37477951 -63902570 - AluJo SINE Alu -23 289 1 25 31 0 0 chr15 37478488 37478520 -63902001 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr15 37478655 37478677 -63901844 + (T)n Simple_repeat Simple_repeat 1 22 0 189 0 0 0 chr15 37478855 37478876 -63901645 + (T)n Simple_repeat Simple_repeat 1 21 0 30 45 0 0 chr15 37478914 37478958 -63901563 + GC_rich Low_complexity Low_complexity 1 44 0 29 0 0 0 chr15 37478958 37478987 -63901534 + AT_rich Low_complexity Low_complexity 1 29 0 294 296 121 34 chr15 37479301 37479507 -63901014 + L2 LINE L2 3090 3313 0 707 188 59 70 chr15 37479530 37479716 -63900805 + AluJb SINE Alu 110 293 -19 715 198 0 0 chr15 37480210 37480336 -63900185 + FLAM_A SINE Alu 1 126 -7 702 162 113 21 chr15 37480421 37480563 -63899958 + AluJb SINE Alu 139 293 -19 2593 0 0 7 chr15 37480570 37480903 -63899618 + AluYa5 SINE Alu 1 331 0 239 154 154 0 chr15 37480994 37481059 -63899462 - L1MA8 LINE L1 -11 6280 6206 571 214 107 78 chr15 37481185 37481428 -63899093 + MIR SINE MIR 13 262 0 1980 157 3 3 chr15 37481465 37481764 -63898757 + AluSx SINE Alu 1 299 -13 711 272 96 23 chr15 37481768 37482029 -63898492 + L2 LINE L2 3033 3312 -1 2298 93 0 3 chr15 37483066 37483368 -63897153 + AluSx SINE Alu 1 301 -11 2137 156 57 7 chr15 37483368 37483773 -63896748 - Tigger2a DNA MER2_type -9 425 1 582 148 312 5 chr15 37483774 37483963 -63896558 + MER5C DNA MER1_type 78 324 0 1778 159 0 43 chr15 37484558 37484860 -63895661 + AluSx SINE Alu 1 289 -23 1366 136 5 9 chr15 37485642 37485862 -63894659 + AluSq SINE Alu 81 299 -14 412 258 226 43 chr15 37487325 37487511 -63893010 - MIR SINE MIR -24 238 19 2227 97 3 3 chr15 37487546 37487854 -63892667 - AluY SINE Alu -3 308 1 243 268 0 56 chr15 37488072 37488143 -63892378 + MIR SINE MIR 196 262 0 343 26 53 158 chr15 37488320 37488363 -63892158 + MER41B LTR ERV1 480 513 -122 2023 137 7 0 chr15 37488363 37488663 -63891858 - AluSx SINE Alu -10 302 1 343 26 53 158 chr15 37488663 37488695 -63891826 + MER41B LTR ERV1 513 547 -88 1716 171 30 3 chr15 37489316 37489614 -63890907 - AluJb SINE Alu -6 306 1 2327 75 10 3 chr15 37491497 37491789 -63888732 + AluSc SINE Alu 1 294 -15 36 0 0 0 chr15 37493190 37493226 -63887295 + AT_rich Low_complexity Low_complexity 1 36 0 1267 137 0 118 chr15 37493226 37493496 -63887025 - AluY SINE Alu -73 238 1 2121 120 10 0 chr15 37493740 37494031 -63886490 + AluSx SINE Alu 1 294 -18 2267 91 14 0 chr15 37494160 37494447 -63886074 + AluSg SINE Alu 1 291 -19 29 0 0 0 chr15 37496462 37496491 -63884030 + AT_rich Low_complexity Low_complexity 1 29 0 28 79 0 0 chr15 37496599 37496662 -63883859 + AT_rich Low_complexity Low_complexity 1 63 0 2539 66 0 0 chr15 37497108 37497413 -63883108 + AluSc SINE Alu 1 305 -4 2158 110 0 10 chr15 37497753 37498052 -63882469 - AluSg SINE Alu -14 296 1 2353 99 0 7 chr15 37498148 37498451 -63882070 + AluSp SINE Alu 2 302 -11 21 71 0 0 chr15 37499866 37499908 -63880613 + AT_rich Low_complexity Low_complexity 1 42 0 216 158 0 0 chr15 37500219 37500257 -63880264 + (TA)n Simple_repeat Simple_repeat 1 38 0 1143 143 0 0 chr15 37500257 37500418 -63880103 - AluSg/x SINE Alu -23 289 129 261 245 66 9 chr15 37500801 37500907 -63879614 + MER113 DNA MER1_type? 4 115 -406 1986 118 7 20 chr15 37500925 37501231 -63879290 - AluSg SINE Alu -8 302 1 740 21 0 0 chr15 37501259 37501352 -63879169 + SVA Other Other 1294 1386 0 349 267 72 46 chr15 37501365 37501560 -63878961 + MER113 DNA MER1_type? 158 357 -164 41 36 0 0 chr15 37501610 37501665 -63878856 + AT_rich Low_complexity Low_complexity 1 55 0 1664 191 0 3 chr15 37501674 37501956 -63878565 - AluJo SINE Alu -31 281 1 2409 81 0 13 chr15 37502309 37502617 -63877904 + AluSx SINE Alu 1 304 -8 838 166 40 20 chr15 37503104 37503255 -63877266 + FRAM SINE Alu 6 159 -17 1827 165 0 10 chr15 37503259 37503550 -63876971 + AluSx SINE Alu 1 288 -24 523 180 16 49 chr15 37506279 37506401 -63874120 - MER58B DNA MER1_type 0 341 224 2164 103 3 20 chr15 37506427 37506728 -63873793 + AluSq SINE Alu 3 298 -15 1418 115 14 5 chr15 37507024 37507233 -63873288 - AluSg/x SINE Alu -20 292 82 2249 94 7 13 chr15 37507533 37507842 -63872679 - AluSx SINE Alu -5 307 1 1492 130 0 5 chr15 37508113 37508329 -63872192 + AluSx SINE Alu 2 216 -96 1788 149 10 13 chr15 37508894 37509196 -63871325 - AluJo SINE Alu -4 308 8 469 304 106 20 chr15 37509739 37509972 -63870549 + MIR SINE MIR 3 256 -6 493 305 146 18 chr15 37510798 37511293 -63869228 + L1ME LINE L1 5257 5814 -348 824 170 0 7 chr15 37511364 37511499 -63869022 - AluJo SINE Alu -178 134 1 1544 187 39 3 chr15 37511844 37512149 -63868372 - MER2 DNA MER2_type -28 317 2 406 237 158 36 chr15 37513864 37514117 -63866404 + HAL1 LINE L1 2167 2450 -57 225 0 0 0 chr15 37514124 37514149 -63866372 + (TG)n Simple_repeat Simple_repeat 2 26 0 713 203 8 8 chr15 37514155 37514288 -63866233 - FLAM_C SINE Alu 0 133 1 392 335 39 39 chr15 37514758 37514961 -63865560 - L2 LINE L2 -559 2755 2553 1498 150 21 108 chr15 37515421 37515754 -63864767 - AluYb8 SINE Alu -12 306 3 2010 128 29 10 chr15 37517147 37517474 -63863047 - AluSx SINE Alu 0 333 1 2581 55 0 7 chr15 37517798 37518106 -63862415 - AluY SINE Alu -5 306 1 2193 110 4 0 chr15 37518167 37518477 -63862044 + AluSp SINE Alu 1 311 0 2051 135 0 10 chr15 37518581 37518885 -63861636 + AluSx SINE Alu 1 301 -11 2433 70 0 0 chr15 37518958 37519258 -63861263 - AluY SINE Alu -11 300 1 1675 124 48 45 chr15 37519259 37519549 -63860972 - AluJb SINE Alu -21 291 1 180 0 0 0 chr15 37524008 37524028 -63856493 + (T)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr15 37524509 37524532 -63855989 + AT_rich Low_complexity Low_complexity 1 23 0 2381 76 0 7 chr15 37525550 37525853 -63854668 - AluY SINE Alu -10 301 1 223 215 56 65 chr15 37526193 37526308 -63854213 + L2 LINE L2 3196 3272 0 1388 146 176 23 chr15 37526570 37526871 -63853650 - MER7A DNA MER2_type -1 345 1 2366 89 10 0 chr15 37527056 37527358 -63853163 + AluSc SINE Alu 1 305 -4 282 331 59 29 chr15 37530320 37530456 -63850065 + MIR SINE MIR 41 180 -82 355 244 133 124 chr15 37531549 37531769 -63848752 - L2 LINE L2 0 3272 3047 2356 103 0 0 chr15 37531769 37532070 -63848451 + AluSg SINE Alu 1 301 -9 355 244 133 124 chr15 37532070 37532164 -63848357 - L2 LINE L2 -225 3047 2955 281 338 91 20 chr15 37533449 37533647 -63846874 + L3b LINE CR1 1249 1460 -123 2430 73 0 0 chr15 37533929 37534217 -63846304 - AluSg SINE Alu -22 288 1 919 136 15 0 chr15 37534221 37534353 -63846168 - AluJo SINE Alu -178 134 1 2142 109 0 0 chr15 37535775 37536050 -63844471 - AluSx SINE Alu -3 309 35 1101 155 0 0 chr15 37536206 37536367 -63844154 + FRAM SINE Alu 1 161 -5 2418 58 6 42 chr15 37536676 37536988 -63843533 + AluY SINE Alu 1 301 -10 313 295 67 0 chr15 37536991 37537096 -63843425 - L1ME3A LINE L1 -15 6155 6044 733 304 31 9 chr15 37537159 37537383 -63843138 - MIR SINE MIR -31 231 3 2382 65 0 0 chr15 37538453 37538731 -63841790 + AluY SINE Alu 16 293 -18 829 150 0 0 chr15 37539070 37539190 -63841331 + FLAM_A SINE Alu 1 120 -13 2539 70 0 0 chr15 37539212 37539513 -63841008 + AluSc SINE Alu 1 301 -8 988 185 0 56 chr15 37539522 37539717 -63840804 + AluJo SINE Alu 36 219 -93 188 236 0 55 chr15 37539723 37539778 -63840743 + MIR SINE MIR 159 210 -52 23 68 0 0 chr15 37540405 37540449 -63840072 + AT_rich Low_complexity Low_complexity 1 44 0 726 286 74 48 chr15 37540455 37541061 -63839460 + L1ME4a LINE L1 5500 6121 0 2412 71 0 3 chr15 37541194 37541489 -63839032 + AluY SINE Alu 1 294 -17 243 0 0 0 chr15 37541489 37541516 -63839005 + (TA)n Simple_repeat Simple_repeat 1 27 0 1038 112 0 0 chr15 37541613 37541756 -63838765 - AluSx SINE Alu -15 297 155 458 114 0 148 chr15 37541759 37541847 -63838674 - AluSx SINE Alu -236 76 2 276 158 69 69 chr15 37541914 37542015 -63838506 - L1ME4a LINE L1 -22 6099 5999 2241 108 0 38 chr15 37542061 37542377 -63838144 - AluSg SINE Alu -6 304 1 195 241 0 52 chr15 37542407 37542465 -63838056 - L3 LINE CR1 -881 696 642 38 22 0 0 chr15 37542639 37542684 -63837837 + AT_rich Low_complexity Low_complexity 1 45 0 2178 104 0 0 chr15 37542688 37542967 -63837554 - AluSg SINE Alu -31 279 1 285 323 138 58 chr15 37543009 37543300 -63837221 - L2 LINE L2 -4 3309 2996 306 334 107 22 chr15 37543367 37543684 -63836837 - L2 LINE L2 -407 2907 2564 563 240 240 6 chr15 37544671 37544854 -63835667 + MIR SINE MIR 25 250 -12 304 280 43 0 chr15 37544983 37545076 -63835445 + MER5B DNA MER1_type 2 98 -80 1874 87 4 0 chr15 37546549 37546779 -63833742 + AluSp SINE Alu 65 295 -18 2005 189 23 7 chr15 37547629 37547917 -63832604 + Charlie1 DNA MER1_type 5 287 -2474 2241 95 48 0 chr15 37547917 37548212 -63832309 + AluY SINE Alu 1 309 -2 2005 189 23 7 chr15 37548212 37548400 -63832121 + Charlie1 DNA MER1_type 287 2761 0 418 191 48 19 chr15 37548400 37548503 -63832018 - MLT1I LTR MaLR -16 393 288 2078 126 10 7 chr15 37548661 37548962 -63831559 + AluSx SINE Alu 1 302 -10 1126 279 45 46 chr15 37549376 37549594 -63830927 - L2 LINE L2 0 3313 3096 2387 113 7 0 chr15 37549594 37549904 -63830617 + AluSq SINE Alu 1 312 -1 1126 279 45 46 chr15 37549904 37550298 -63830223 - L2 LINE L2 -217 3096 2709 2283 78 0 10 chr15 37550298 37550618 -63829903 - AluY SINE Alu 0 311 1 1126 279 45 46 chr15 37550618 37550744 -63829777 - L2 LINE L2 -604 2709 2584 514 271 53 43 chr15 37550748 37550955 -63829566 + MER63A DNA MER1_type 2 210 0 801 234 39 39 chr15 37551540 37551796 -63828725 - MER112 DNA MER1_type 0 256 1 2637 56 0 0 chr15 37552678 37552981 -63827540 + AluY SINE Alu 1 303 -8 2160 125 0 0 chr15 37553005 37553292 -63827229 - AluSx SINE Alu -25 287 1 2135 137 70 41 chr15 37554914 37555061 -63825460 - L1MB7 LINE L1 -2 6182 6041 1839 127 35 3 chr15 37555061 37555344 -63825177 - AluJb SINE Alu -20 292 1 2135 137 70 41 chr15 37555344 37555495 -63825026 - L1MB7 LINE L1 -143 6041 5896 1578 153 76 4 chr15 37555495 37555744 -63824777 - AluJo SINE Alu -45 267 1 2135 137 70 41 chr15 37555744 37555903 -63824618 - L1MB7 LINE L1 -288 5896 5711 2084 128 0 7 chr15 37556275 37556571 -63823950 + AluSx SINE Alu 1 294 -18 3281 105 133 36 chr15 37556608 37556944 -63823577 - Tigger3(Golem) DNA MER2_type 0 3029 2727 203 61 30 0 chr15 37556944 37556977 -63823544 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 3281 105 133 36 chr15 37556977 37557182 -63823339 - Tigger3(Golem) DNA MER2_type -302 2727 2543 2234 123 0 0 chr15 37557182 37557483 -63823038 - AluSx SINE Alu -11 301 1 3281 105 133 36 chr15 37557483 37557626 -63822895 - Tigger3(Golem) DNA MER2_type -486 2543 2278 627 204 0 0 chr15 37557617 37557725 -63822796 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 415 209 191 0 chr15 37557727 37557842 -63822679 - MIR SINE MIR -25 237 101 2261 125 3 3 chr15 37557842 37558154 -63822367 + AluSx SINE Alu 1 312 0 1669 137 0 41 chr15 37558183 37558453 -63822068 + AluJo SINE Alu 37 295 -17 263 318 45 0 chr15 37558454 37558542 -63821979 - MIR SINE MIR -153 109 18 2414 82 3 0 chr15 37558572 37558863 -63821658 - AluSp SINE Alu -21 292 1 203 186 0 0 chr15 37559147 37559190 -63821331 + L2 LINE L2 2922 2964 -349 339 278 209 27 chr15 37560779 37561038 -63819483 - L2 LINE L2 0 3313 3008 2292 109 3 7 chr15 37562479 37562782 -63817739 + AluSx SINE Alu 1 302 -10 2395 84 3 3 chr15 37562818 37563129 -63817392 - AluY SINE Alu 0 311 1 2251 128 0 0 chr15 37563204 37563500 -63817021 - AluSq SINE Alu -17 296 1 1720 102 0 34 chr15 37563580 37563816 -63816705 + AluJb SINE Alu 73 300 -12 841 159 0 0 chr15 37563836 37563962 -63816559 + FLAM_A SINE Alu 10 135 -7 1762 161 39 42 chr15 37565160 37565470 -63815051 + AluJb SINE Alu 1 309 -3 999 198 11 5 chr15 37566099 37566286 -63814235 - MER5A DNA MER1_type -1 188 1 285 293 61 10 chr15 37566389 37566488 -63814033 - MER5B DNA MER1_type -1 177 74 1601 242 61 40 chr15 37568606 37569151 -63811370 - MER90 LTR ERV1 -16 559 4 491 306 68 0 chr15 37569667 37569814 -63810707 + MIR SINE MIR 85 241 -21 2311 204 52 13 chr15 37570638 37571191 -63809330 + L1MD3 LINE L1 7405 7979 -16 815 245 130 5 chr15 37575288 37575504 -63805017 + MIR SINE MIR 14 256 -6 344 263 12 0 chr15 37579532 37579612 -63800909 - MER94 DNA DNA -6 128 48 202 292 0 0 chr15 37581098 37581146 -63799375 + (CA)n Simple_repeat Simple_repeat 1 48 0 2201 86 7 20 chr15 37581739 37582043 -63798478 + AluSx SINE Alu 1 300 -12 24 0 0 0 chr15 37582154 37582178 -63798343 + GC_rich Low_complexity Low_complexity 1 24 0 212 206 19 88 chr15 37582667 37582827 -63797694 + (CGGGG)n Simple_repeat Simple_repeat 1 149 0 226 244 0 0 chr15 37583343 37583388 -63797133 + CT-rich Low_complexity Low_complexity 4 48 0 232 209 295 0 chr15 37583544 37583649 -63796872 - L1MC4a LINE L1 -1868 5940 5805 373 224 46 121 chr15 37583731 37583905 -63796616 - L2 LINE L2 -4 3309 3149 255 281 24 37 chr15 37583923 37584005 -63796516 - L2 LINE L2 -367 2946 2866 1296 170 91 25 chr15 37584043 37584319 -63796202 - AluJo SINE Alu -18 294 1 830 163 208 6 chr15 37584512 37584690 -63795831 + AluJo SINE Alu 1 214 -98 239 247 4 4 chr15 37584691 37584768 -63795753 + MER52C LTR ERV1 1 60 -1218 3769 175 140 15 chr15 37585148 37586007 -63794514 + MER52A LTR ERV1 56 1021 -734 4228 166 46 5 chr15 37586339 37587106 -63793415 + MER52A LTR ERV1 957 1754 -1 504 153 0 0 chr15 37587106 37587178 -63793343 + AluJo SINE Alu 211 282 -30 263 381 41 22 chr15 37587687 37587957 -63792564 - L2 LINE L2 -453 2861 2587 851 272 46 52 chr15 37587959 37588115 -63792406 - L2 LINE L2 0 3313 3158 213 39 0 0 chr15 37588115 37588141 -63792380 + (TA)n Simple_repeat Simple_repeat 2 27 0 1905 161 3 0 chr15 37588141 37588445 -63792076 - AluJo SINE Alu -7 305 1 851 272 46 52 chr15 37588445 37588636 -63791885 - L2 LINE L2 -153 3160 2967 188 310 70 31 chr15 37588603 37588732 -63791789 - L2 LINE L2 -720 2594 2461 * 239 198 0 86 chr15 37588950 37589031 -63791490 + L2 LINE L2 3190 3263 -9 351 324 81 0 chr15 37592100 37592305 -63788216 + MIR SINE MIR 39 258 -4 2192 84 10 7 chr15 37592318 37592614 -63787907 - AluY SINE Alu -14 297 1 633 229 159 10 chr15 37594505 37594706 -63785815 + MIR SINE MIR 24 254 -8 183 326 0 0 chr15 37597519 37597568 -63782953 + L2 LINE L2 3210 3258 -14 1885 97 31 0 chr15 37597807 37598066 -63782455 - AluSx SINE Alu -13 299 33 236 203 0 31 chr15 37599795 37599859 -63780662 + (CTGGGG)n Simple_repeat Simple_repeat 3 64 0 345 289 114 18 chr15 37605321 37605435 -63775086 + MIR3 SINE MIR 6 130 -78 671 79 0 0 chr15 37606666 37606755 -63773766 - 5S rRNA rRNA -32 89 1 343 289 74 7 chr15 37610537 37610672 -63769849 - MER5B DNA MER1_type -4 174 31 233 188 42 0 chr15 37610861 37610909 -63769612 - MER5B DNA MER1_type -128 50 1 339 246 189 0 chr15 37612541 37612663 -63767858 + MIR SINE MIR 77 221 -41 1887 151 0 3 chr15 37612741 37613026 -63767495 + AluSx SINE Alu 2 285 -27 668 167 106 66 chr15 37613858 37613887 -63766634 + MLT1B LTR MaLR 1 27 -363 2157 121 0 0 chr15 37613887 37614184 -63766337 - AluSx SINE Alu -15 297 1 668 167 106 66 chr15 37614184 37614352 -63766169 + MLT1B LTR MaLR 27 206 -184 1889 124 14 3 chr15 37619056 37619339 -63761182 - AluSx SINE Alu -26 286 1 187 271 188 57 chr15 37619619 37619749 -63760772 - MIR SINE MIR -56 152 12 614 245 44 84 chr15 37620050 37620323 -63760198 - L1MD2 LINE L1 -15 6344 6083 270 261 54 45 chr15 37623927 37624038 -63756483 - MIR3 SINE MIR -87 121 10 191 234 18 36 chr15 37627225 37627336 -63753185 + (CCCA)n Simple_repeat Simple_repeat 4 112 0 236 273 30 0 chr15 37632364 37632430 -63748091 - MER91A DNA MER1_type 0 196 129 462 315 48 6 chr15 37632445 37632610 -63747911 - MER91A DNA MER1_type -24 172 1 2339 58 7 0 chr15 37633512 37633807 -63746714 + AluYa5 SINE Alu 2 298 -13 387 301 172 23 chr15 37635357 37635752 -63744769 + L2 LINE L2 2818 3271 -1 219 164 18 55 chr15 37636934 37636989 -63743532 + C-rich Low_complexity Low_complexity 4 56 0 1806 238 103 24 chr15 37638466 37638517 -63742004 + L2 LINE L2 2398 2444 -869 2115 88 6 60 chr15 37638517 37638699 -63741822 - AluSx SINE Alu -12 300 141 2341 87 0 3 chr15 37638699 37639011 -63741510 - AluY SINE Alu 0 311 1 2115 88 6 60 chr15 37639011 37639145 -63741376 - AluSx SINE Alu -171 141 1 1806 238 103 24 chr15 37639145 37639748 -63740773 + L2 LINE L2 2444 3139 -174 2145 96 3 3 chr15 37639748 37640049 -63740472 - AluSx SINE Alu -11 301 1 1806 238 103 24 chr15 37640049 37640239 -63740282 + L2 LINE L2 3139 3313 0 532 305 74 15 chr15 37641715 37641934 -63738587 - MIR SINE MIR -30 232 3 1732 141 4 4 chr15 37643230 37643486 -63737035 - AluSx SINE Alu -56 256 1 852 191 7 7 chr15 37644145 37644297 -63736224 - AluJb SINE Alu -14 298 147 254 336 118 0 chr15 37645416 37645526 -63734995 + MER5B DNA MER1_type 49 171 -7 390 339 130 4 chr15 37645587 37645826 -63734695 + L2 LINE L2 2804 3072 -241 194 284 185 0 chr15 37645890 37645971 -63734550 + L2 LINE L2 3217 3312 -1 687 269 88 5 chr15 37646179 37646372 -63734149 - MER63A DNA MER1_type -1 209 1 241 300 60 10 chr15 37646510 37646610 -63733911 + MIR SINE MIR 66 170 -92 263 278 106 80 chr15 37647203 37647354 -63733167 + MIR3 SINE MIR 47 201 -7 244 358 88 10 chr15 37650071 37650264 -63730257 + L2 LINE L2 2853 3060 -212 29 0 0 0 chr15 37650668 37650697 -63729824 + AT_rich Low_complexity Low_complexity 1 29 0 775 178 8 0 chr15 37650697 37650826 -63729695 - FLAM_C SINE Alu -2 131 2 1918 98 18 4 chr15 37653314 37653588 -63726933 + AluSc SINE Alu 32 309 0 650 271 22 22 chr15 37655178 37655359 -63725162 - MIR3 SINE MIR -3 205 25 684 157 0 0 chr15 37656967 37657114 -63723407 + (TCCA)n Simple_repeat Simple_repeat 2 148 0 329 353 21 37 chr15 37657114 37657355 -63723166 - L2 LINE L2 0 3313 3077 698 125 0 0 chr15 37657356 37657452 -63723069 + AluJ/FLAM SINE Alu 1 96 -216 394 203 18 26 chr15 37657460 37657573 -63722948 + L1MC4 LINE L1 1996 6983 -1339 365 359 0 0 chr15 37657492 37657584 -63722937 - L1MC4 LINE L1 -1339 6703 6612 * 381 302 58 36 chr15 37658036 37658175 -63722346 - L1ME4a LINE L1 -11 6110 5969 282 56 0 0 chr15 37658176 37658212 -63722309 + (CA)n Simple_repeat Simple_repeat 2 37 0 392 299 49 42 chr15 37658236 37658380 -63722141 - L1ME4a LINE L1 -248 5873 5729 294 325 89 47 chr15 37660155 37660346 -63720175 - L2 LINE L2 0 3313 3115 1594 181 13 7 chr15 37660389 37660692 -63719829 - AluJo SINE Alu -7 305 1 4396 172 97 0 chr15 37660740 37661582 -63718939 + LTR28 LTR ERV1 1 924 -96 1820 155 0 10 chr15 37662251 37662541 -63717980 - AluJb SINE Alu -23 289 3 423 0 0 0 chr15 37662545 37662592 -63717929 + (TG)n Simple_repeat Simple_repeat 2 48 0 1985 125 24 0 chr15 37662597 37662886 -63717635 - AluSx SINE Alu -16 296 1 367 260 126 0 chr15 37663237 37663364 -63717157 + Charlie8 DNA MER1_type 12 154 -2263 251 233 0 0 chr15 37663500 37663560 -63716961 + Charlie8 DNA MER1_type 351 410 -2007 2271 84 3 0 chr15 37665305 37665591 -63714930 - AluSx SINE Alu -25 287 1 2185 124 0 0 chr15 37667135 37667434 -63713087 + AluSx SINE Alu 1 299 -13 322 224 26 40 chr15 37667538 37667614 -63712907 - MIR SINE MIR -104 104 30 371 395 35 5 chr15 37668136 37668329 -63712192 + MIR SINE MIR 15 211 -51 198 0 0 0 chr15 37668763 37668785 -63711736 + (TG)n Simple_repeat Simple_repeat 1 22 0 1311 114 0 0 chr15 37669512 37669696 -63710825 - AluSx SINE Alu -12 298 115 243 0 0 0 chr15 37669812 37669839 -63710682 + (CA)n Simple_repeat Simple_repeat 2 28 0 974 98 0 0 chr15 37669981 37670104 -63710417 - AluSx SINE Alu -190 123 1 469 343 22 6 chr15 37671033 37671211 -63709310 + MIR SINE MIR 28 208 -54 2202 89 0 0 chr15 37671823 37672141 -63708380 - AluSg SINE Alu 0 318 1 309 51 0 0 chr15 37672940 37672979 -63707542 + (CA)n Simple_repeat Simple_repeat 2 40 0 330 320 165 24 chr15 37673614 37673820 -63706701 - MIR SINE MIR -12 250 16 357 316 26 8 chr15 37675290 37675407 -63705114 - L1MC4 LINE L1 0 8042 7924 421 348 50 43 chr15 37675418 37675679 -63704842 + L1MD1 LINE L1 5768 5967 -217 282 294 64 9 chr15 37676718 37676827 -63703694 + LTR67 LTR ERVL 428 542 -15 1647 157 18 7 chr15 37676837 37677146 -63703375 + AluJo SINE Alu 1 312 0 642 306 104 17 chr15 37677391 37677738 -63702783 + HsTC2 DNA Tc2 215 591 -1307 1394 148 165 3 chr15 37677770 37678067 -63702454 - L1MB3 LINE L1 -36 6147 5803 532 335 17 6 chr15 37678205 37678381 -63702140 + MER5B DNA MER1_type 1 178 0 794 199 58 103 chr15 37679015 37679276 -63701245 + MIR SINE MIR 11 259 -3 191 231 0 0 chr15 37679293 37679332 -63701189 + L2 LINE L2 3262 3300 -13 484 267 37 51 chr15 37679338 37679520 -63701001 + L1ME1 LINE L1 5949 6129 -37 2003 123 3 14 chr15 37679520 37679804 -63700717 + AluSx SINE Alu 17 297 -15 484 267 37 51 chr15 37679804 37679838 -63700683 + L1ME1 LINE L1 6129 6162 -4 864 139 29 22 chr15 37680804 37680941 -63699580 + FLAM_C SINE Alu 1 138 -5 381 271 71 43 chr15 37681416 37681653 -63698868 + L2 LINE L2 2797 3050 -222 283 268 222 20 chr15 37681819 37681972 -63698549 + L2 LINE L2 3118 3301 -12 2848 155 16 78 chr15 37681974 37682593 -63697928 + L1MB1 LINE L1 5587 6167 -1 956 273 16 4 chr15 37682960 37683209 -63697312 - MIR SINE MIR -10 252 1 299 189 57 47 chr15 37683219 37683325 -63697196 + L1ME4a LINE L1 6015 6121 0 187 279 177 13 chr15 37684419 37684498 -63696023 + MIR3 SINE MIR 103 194 -14 301 148 36 9 chr15 37685639 37685725 -63694796 + L1M3 LINE L1 5352 5443 -712 262 331 23 31 chr15 37685724 37685854 -63694667 + L1MC4a LINE L1 5536 5664 -2144 * 413 97 0 136 chr15 37685884 37685960 -63694561 - L1MA8 LINE L1 -2 6289 6228 2046 126 0 14 chr15 37685960 37686305 -63694216 + AluJb SINE Alu 1 341 0 413 97 0 136 chr15 37686305 37686330 -63694191 - L1MA8 LINE L1 -63 6228 6201 2566 67 0 0 chr15 37686513 37686811 -63693710 - AluSg SINE Alu -12 298 1 389 254 146 32 chr15 37686922 37687107 -63693414 + L1MC4a LINE L1 5695 5900 -1908 198 279 128 0 chr15 37687829 37687915 -63692606 - MIR SINE MIR -57 205 109 407 227 58 71 chr15 37688211 37688365 -63692156 - MIR SINE MIR -51 211 60 1650 175 16 30 chr15 37689146 37689449 -63691072 - AluJo SINE Alu -13 299 1 573 257 166 17 chr15 37689771 37690224 -63690297 + L2 LINE L2 2738 3253 -19 360 115 33 0 chr15 37690494 37690555 -63689966 + MIR SINE MIR 14 76 -186 641 270 70 64 chr15 37690555 37691049 -63689472 - MLT1H1 LTR MaLR -8 541 64 679 192 53 20 chr15 37691122 37691273 -63689248 + MIR SINE MIR 67 222 -40 1996 134 58 12 chr15 37692699 37693042 -63687479 - MER46B DNA MER2_type -2 234 1 22 0 0 0 chr15 37694113 37694135 -63686386 + AT_rich Low_complexity Low_complexity 1 22 0 784 96 0 19 chr15 37694250 37694354 -63686167 + AluSq/x SINE Alu 2 103 -210 1408 109 35 5 chr15 37694448 37694649 -63685872 + AluSc SINE Alu 93 299 -10 866 118 0 52 chr15 37694818 37694954 -63685567 - FLAM_C SINE Alu -4 129 1 381 296 65 9 chr15 37696010 37696226 -63684295 + L1MC4a LINE L1 5703 5930 -1878 2152 105 16 7 chr15 37697078 37697382 -63683139 - AluSq SINE Alu -5 308 2 314 270 45 18 chr15 37697525 37697636 -63682885 + L2 LINE L2 2966 3079 -193 352 209 363 16 chr15 37698309 37698491 -63682030 - MIR SINE MIR -5 257 13 396 259 43 36 chr15 37698913 37699052 -63681469 + MIR3 SINE MIR 4 143 -65 209 342 76 0 chr15 37699513 37699592 -63680929 - MIR SINE MIR -109 153 69 641 257 62 40 chr15 37700683 37700909 -63679612 + MIR SINE MIR 7 237 -25 1841 141 18 0 chr15 37701300 37701584 -63678937 + AluJo SINE Alu 1 289 -23 617 270 89 21 chr15 37701776 37702013 -63678508 - MIR SINE MIR -3 259 7 213 297 81 36 chr15 37702157 37702268 -63678253 + MIR3 SINE MIR 4 119 -89 263 227 67 0 chr15 37702595 37702670 -63677851 - MER116 DNA Mariner 0 80 1 2231 97 7 0 chr15 37702826 37703115 -63677406 + AluSg SINE Alu 1 291 -19 890 133 0 15 chr15 37703174 37703309 -63677212 - FLAM_C SINE Alu 0 133 1 1764 152 15 0 chr15 37703598 37703868 -63676653 + AluJo SINE Alu 1 274 -38 332 206 44 0 chr15 37703880 37703948 -63676573 - L1MCa LINE L1 -4362 2064 1994 2350 107 0 0 chr15 37703949 37704257 -63676264 + AluSx SINE Alu 1 308 -4 261 301 45 53 chr15 37705602 37705735 -63674786 + MIR3 SINE MIR 12 143 -65 306 0 0 0 chr15 37705864 37705898 -63674623 + (CCCTAA)n Simple_repeat Simple_repeat 3 36 0 597 294 76 9 chr15 37705952 37706163 -63674358 + MIR SINE MIR 38 262 0 180 171 49 24 chr15 37707112 37707153 -63673368 - L3b LINE CR1 -106 1477 1436 2337 96 0 29 chr15 37707569 37707881 -63672640 + AluSx SINE Alu 1 303 -9 668 263 50 0 chr15 37708046 37708225 -63672296 - L3 LINE CR1 -26 1551 1364 742 201 15 8 chr15 37708242 37708376 -63672145 - AluJo SINE Alu -176 136 2 301 364 15 8 chr15 37708380 37708512 -63672009 - L3 LINE CR1 -224 1353 1221 309 360 42 33 chr15 37709176 37709390 -63671131 - L3b LINE CR1 -72 1511 1296 2000 125 28 14 chr15 37709610 37709899 -63670622 - AluJb SINE Alu -19 293 1 525 283 40 77 chr15 37710104 37710223 -63670298 - MIR SINE MIR -2 260 153 2883 10 0 3 chr15 37710223 37710535 -63669986 - AluYa5 SINE Alu 0 311 1 525 283 40 77 chr15 37710535 37710662 -63669859 - MIR SINE MIR -109 153 23 394 291 25 0 chr15 37712210 37712344 -63668177 + L1ME LINE L1 5474 5607 -514 2108 138 3 3 chr15 37712352 37712656 -63667865 + AluJb SINE Alu 2 305 -7 217 265 66 99 chr15 37712797 37712948 -63667573 - MIR3 SINE MIR -40 168 23 563 191 119 0 chr15 37714054 37714194 -63666327 - MIR SINE MIR -18 244 89 2762 35 0 13 chr15 37714413 37714726 -63665795 + AluY SINE Alu 1 309 -2 2189 102 27 7 chr15 37714988 37715282 -63665239 + AluSx SINE Alu 1 300 -12 304 282 92 30 chr15 37715473 37715604 -63664917 - MIR SINE MIR -40 222 84 753 212 151 14 chr15 37715617 37715909 -63664612 - L1ME4a LINE L1 -111 6010 5679 2428 84 3 0 chr15 37715973 37716270 -63664251 - AluSx SINE Alu -9 303 6 230 273 15 0 chr15 37716771 37716837 -63663684 + MER103 DNA DNA 99 165 -1 258 308 55 16 chr15 37717186 37717368 -63663153 + L1ME4a LINE L1 4228 4416 -1730 915 317 80 59 chr15 37717476 37717946 -63662575 + L1ME4a LINE L1 4567 5025 -1121 5511 61 9 7 chr15 37717946 37718618 -63661903 + SVA Other Other 714 1386 0 2144 125 3 7 chr15 37718621 37718924 -63661597 + AluSx SINE Alu 1 302 -10 915 317 80 59 chr15 37718924 37719168 -63661353 + L1ME4a LINE L1 5026 5306 -840 2566 75 0 0 chr15 37719168 37719473 -63661048 + AluY SINE Alu 1 305 -6 915 317 80 59 chr15 37719473 37719538 -63660983 + L1ME4a LINE L1 5306 5368 -778 1931 120 0 35 chr15 37719629 37719912 -63660609 + AluJo SINE Alu 13 285 -27 546 226 128 116 chr15 37719976 37720087 -63660434 + L1ME4a LINE L1 5524 5632 -489 1951 150 3 3 chr15 37720087 37720373 -63660148 - AluJb SINE Alu -26 286 1 546 226 128 116 chr15 37720373 37720659 -63659862 + L1ME4a LINE L1 5632 5926 -195 312 209 30 0 chr15 37720659 37720726 -63659795 - L3 LINE CR1 -891 686 618 480 243 18 101 chr15 37720810 37721003 -63659518 - MER5A DNA MER1_type 0 189 3 216 214 43 29 chr15 37721221 37721291 -63659230 + (CCCA)n Simple_repeat Simple_repeat 1 71 0 341 268 110 0 chr15 37721494 37721658 -63658863 + L2 LINE L2 1814 1995 -1319 473 232 141 15 chr15 37721701 37722121 -63658400 + MLT1K LTR MaLR 40 580 -8 453 258 131 12 chr15 37722254 37722498 -63658023 + L2 LINE L2 2217 2489 -825 245 296 37 93 chr15 37722483 37722645 -63657876 + L2 LINE L2 2966 3118 -154 * 218 394 61 15 chr15 37722990 37723188 -63657333 - L3 LINE CR1 -1295 282 76 972 135 0 0 chr15 37723758 37723891 -63656630 - FLAM_C SINE Alu 0 133 1 881 178 43 0 chr15 37724085 37724248 -63656273 - L1MB7 LINE L1 -16 6168 5999 306 117 67 17 chr15 37724249 37724309 -63656212 - L1M4 LINE L1 -1202 4944 4882 * 505 154 89 0 chr15 37724308 37724431 -63656090 - L1M4 LINE L1 -1876 4270 4137 2419 62 10 0 chr15 37724570 37724859 -63655662 + AluSp SINE Alu 5 296 -17 22 35 0 0 chr15 37727862 37727891 -63652630 + GC_rich Low_complexity Low_complexity 1 29 0 2372 89 0 0 chr15 37728613 37728929 -63651592 - AluSx SINE Alu 0 312 1 451 218 112 71 chr15 37729045 37729215 -63651306 + MER5A DNA MER1_type 7 183 -6 509 235 0 0 chr15 37729260 37729358 -63651163 - MER5A DNA MER1_type -83 106 9 348 321 113 6 chr15 37729360 37729519 -63651002 + MIR SINE MIR 19 194 -68 321 342 52 52 chr15 37729591 37729784 -63650737 + L1M4 LINE L1 4990 5182 -964 3271 125 10 0 chr15 37729800 37730320 -63650201 + L1MC1 LINE L1 5600 6124 -209 787 166 18 31 chr15 37730343 37730506 -63650015 - L1MC1 LINE L1 -19 6314 6154 1893 189 13 26 chr15 37730523 37731179 -63649342 + L1ME4a LINE L1 4971 5625 -541 500 236 1 0 chr15 37731179 37731313 -63649208 + L1MA10 LINE L1 5985 6278 -47 1207 138 38 5 chr15 37731314 37731524 -63648997 - MER2 DNA MER2_type -5 340 124 438 90 82 179 chr15 37731555 37731689 -63648832 - MER2 DNA MER2_type -210 135 15 415 253 131 68 chr15 37731869 37732013 -63648508 + L1ME4a LINE L1 5746 5880 -241 3572 134 43 21 chr15 37732013 37732080 -63648441 + L1MB2 LINE L1 5545 5609 -562 1764 131 13 29 chr15 37732080 37732386 -63648135 + AluSx SINE Alu 1 301 -11 3572 134 43 21 chr15 37732386 37732555 -63647966 + L1MB2 LINE L1 5609 5773 -398 186 43 0 0 chr15 37732555 37732578 -63647943 + (CA)n Simple_repeat Simple_repeat 2 24 0 3572 134 43 21 chr15 37732578 37732944 -63647577 + L1MB2 LINE L1 5773 6161 -10 415 253 131 68 chr15 37732944 37733151 -63647370 + L1ME4a LINE L1 5880 6119 -2 270 101 0 0 chr15 37733298 37733345 -63647176 - L1MA2 LINE L1 0 6305 6259 256 159 0 0 chr15 37733357 37733401 -63647120 - L1MA2 LINE L1 -2 6302 6259 253 156 0 0 chr15 37733424 37733469 -63647052 - L1MA1 LINE L1 -1 6301 6257 228 146 0 42 chr15 37733481 37733529 -63646992 - L1MA1 LINE L1 0 6302 6257 262 132 0 0 chr15 37733549 37733596 -63646925 - L1MA2 LINE L1 0 6305 6259 199 364 67 42 chr15 37733604 37733769 -63646752 - L3b LINE CR1 -253 1330 1162 1183 249 112 16 chr15 37734153 37734538 -63645983 + MLT1J LTR MaLR 44 465 -46 1840 214 101 56 chr15 37734679 37735234 -63645287 + MLT1G LTR MaLR 11 590 0 365 264 28 28 chr15 37735255 37735361 -63645160 - MLT1J LTR MaLR -64 447 342 * 477 220 56 3 chr15 37735351 37735524 -63644997 + MLT1J LTR MaLR 238 475 -36 244 361 39 29 chr15 37735548 37735753 -63644768 - L2 LINE L2 -1015 2299 2093 267 308 58 25 chr15 37735927 37736047 -63644474 + L2 LINE L2 3190 3313 0 354 284 29 62 chr15 37736064 37736272 -63644249 - L2 LINE L2 -1292 2022 1822 324 341 63 8 chr15 37737249 37737375 -63643146 - MER5A DNA MER1_type -7 182 50 1894 88 88 4 chr15 37738315 37738588 -63641933 + AluSx SINE Alu 1 296 -16 214 304 0 0 chr15 37739375 37739444 -63641077 + (CA)n Simple_repeat Simple_repeat 1 69 0 246 298 53 18 chr15 37739444 37739558 -63640963 + L2 LINE L2 3155 3272 0 508 280 47 57 chr15 37740357 37740550 -63639971 + MIR SINE MIR 20 210 -52 1904 121 17 27 chr15 37741832 37742130 -63638391 - AluJb SINE Alu -16 296 2 216 258 97 0 chr15 37742180 37742242 -63638279 + MIR SINE MIR 118 185 -77 338 163 0 113 chr15 37743776 37743856 -63636665 + MIR SINE MIR 191 261 -1 402 294 43 37 chr15 37743897 37744060 -63636461 - MIR SINE MIR -91 171 8 221 111 44 0 chr15 37746007 37746052 -63634469 + C-rich Low_complexity Low_complexity 1 47 0 260 321 12 0 chr15 37746880 37746964 -63633557 + L2 LINE L2 3227 3311 -2 1052 282 115 0 chr15 37747426 37747774 -63632747 + LTR16B LTR ERVL 3 390 -74 188 396 18 0 chr15 37747862 37747973 -63632548 - L3b LINE CR1 -139 1444 1332 926 241 21 33 chr15 37748503 37748744 -63631777 + MIR SINE MIR 4 241 -21 183 325 25 74 chr15 37748646 37748809 -63631712 - MIR SINE MIR -105 157 3 * 431 305 187 0 chr15 37749378 37749565 -63630956 + MIR SINE MIR 7 228 -34 813 176 0 0 chr15 37749845 37749976 -63630545 - FLAM_C SINE Alu -2 131 1 25 0 0 0 chr15 37749978 37750003 -63630518 + AT_rich Low_complexity Low_complexity 1 25 0 790 153 55 27 chr15 37750017 37750200 -63630321 + ORSL DNA AcHobo 66 253 -22 310 333 9 0 chr15 37750435 37750546 -63629975 - MIR SINE MIR -81 181 70 247 324 48 9 chr15 37751056 37751161 -63629360 - MIR3 SINE MIR -9 199 91 2143 128 0 3 chr15 37751377 37751690 -63628831 + AluJb SINE Alu 1 312 0 363 313 130 21 chr15 37752650 37752842 -63627679 + MIR SINE MIR 47 259 -3 185 229 0 0 chr15 37753024 37753059 -63627462 - L2 LINE L2 -86 3227 3193 438 349 11 21 chr15 37753657 37753846 -63626675 - MIR SINE MIR 0 262 76 2122 192 38 35 chr15 37753865 37754084 -63626437 + L1M4 LINE L1 4844 5061 -1123 2009 97 14 0 chr15 37754084 37754401 -63626120 + AluSx SINE Alu 1 321 0 2122 192 38 35 chr15 37754401 37754852 -63625669 + L1M4 LINE L1 5061 5514 -670 289 309 147 0 chr15 37755699 37755835 -63624686 - MER5A DNA MER1_type -26 163 8 1984 139 0 3 chr15 37757016 37757310 -63623211 - AluJb SINE Alu -19 293 1 1514 112 177 4 chr15 37757345 37757605 -63622916 + AluJb SINE Alu 1 305 -7 1363 106 5 5 chr15 37758579 37758777 -63621744 - AluSg/x SINE Alu -15 297 100 337 94 12 47 chr15 37759179 37759264 -63621257 + (TTCC)n Simple_repeat Simple_repeat 1 82 0 1948 125 54 0 chr15 37759342 37759638 -63620883 + AluSx SINE Alu 1 312 0 365 196 0 21 chr15 37759650 37759747 -63620774 + GA-rich Low_complexity Low_complexity 4 98 0 187 283 17 17 chr15 37760059 37760119 -63620402 + MER5A DNA MER1_type 116 175 -14 344 281 116 0 chr15 37760733 37760854 -63619667 + L2 LINE L2 3179 3313 0 500 301 72 5 chr15 37760985 37761178 -63619343 - MIR SINE MIR -6 256 51 477 278 232 6 chr15 37764578 37764927 -63615594 + L2 LINE L2 2431 2858 -456 268 269 0 0 chr15 37764972 37765039 -63615482 + (CA)n Simple_repeat Simple_repeat 1 67 0 326 271 79 83 chr15 37765081 37765310 -63615211 + L2 LINE L2 2932 3159 -113 1923 144 3 25 chr15 37766758 37767077 -63613444 + AluJb SINE Alu 1 312 0 314 296 12 0 chr15 37768835 37768916 -63611605 + (CA)n Simple_repeat Simple_repeat 2 83 0 379 330 43 61 chr15 37769100 37769204 -63611317 + L2 LINE L2 2999 3103 -169 2099 105 13 3 chr15 37769204 37769510 -63611011 - AluSq SINE Alu -4 309 1 379 330 43 61 chr15 37769510 37769684 -63610837 + L2 LINE L2 3103 3272 0 322 211 13 26 chr15 37770882 37770958 -63609563 - L2 LINE L2 -19 3253 3179 305 111 0 0 chr15 37771562 37771616 -63608905 - Alu SINE Alu 0 302 249 1879 138 3 10 chr15 37771658 37771956 -63608565 - AluSx SINE Alu -16 296 1 226 325 119 19 chr15 37772578 37772738 -63607783 - L3b LINE CR1 -135 1448 1273 * 428 337 87 6 chr15 37772714 37772886 -63607635 - MIR SINE MIR 0 262 77 388 342 95 5 chr15 37774276 37774466 -63606055 - MIR SINE MIR -35 227 21 3763 126 6 2 chr15 37777625 37778150 -63602371 - MER1A DNA MER1_type 0 527 1 233 305 0 110 chr15 37778238 37778392 -63602129 - L2 LINE L2 -219 3053 2917 193 360 13 0 chr15 37779304 37779379 -63601142 - L2 LINE L2 -15 3257 3182 2354 78 13 0 chr15 37780244 37780551 -63599970 + AluY SINE Alu 1 311 0 4131 83 12 5 chr15 37780558 37781124 -63599397 - LTR19B LTR ERV1 -10 570 1 401 368 15 5 chr15 37781192 37781225 -63599296 + L1M4 LINE L1 4981 5012 -1134 23 33 0 0 chr15 37781225 37781255 -63599266 + AT_rich Low_complexity Low_complexity 1 30 0 401 368 15 5 chr15 37781255 37781396 -63599125 + L1M4 LINE L1 5012 5186 -960 509 357 107 10 chr15 37781443 37781734 -63598787 + L1ME LINE L1 4664 4982 -1164 286 282 46 30 chr15 37781786 37781917 -63598604 + L1ME LINE L1 5412 5544 -577 2291 133 0 0 chr15 37782016 37782324 -63598197 + AluSx SINE Alu 1 308 -4 498 297 184 30 chr15 37782790 37783372 -63597149 + L2 LINE L2 2569 3258 -55 553 233 275 0 chr15 37783449 37783638 -63596883 - MIR SINE MIR -12 250 10 2269 104 0 0 chr15 37783694 37784045 -63596476 - AluSx SINE Alu 0 351 1 1831 161 7 14 chr15 37784424 37784734 -63595787 - AluJb SINE Alu 0 308 1 645 279 132 0 chr15 37784950 37785154 -63595367 + MIR SINE MIR 3 233 -29 1498 225 15 45 chr15 37786036 37786300 -63594221 - L1ME1 LINE L1 -162 6004 5755 1833 149 27 30 chr15 37786300 37786601 -63593920 - AluJb SINE Alu -6 306 7 1498 225 15 45 chr15 37786601 37786736 -63593785 - L1ME1 LINE L1 -411 5755 5617 208 333 17 17 chr15 37786805 37786925 -63593596 + CT-rich Low_complexity Low_complexity 5 124 0 2277 151 76 2 chr15 37787201 37787598 -63592923 + MSTB LTR MaLR 1 426 0 226 199 32 19 chr15 37788294 37788450 -63592071 + (TG)n Simple_repeat Simple_repeat 1 158 0 536 259 9 0 chr15 37789449 37789557 -63590964 + MER81 DNA DNA 2 110 -4 237 214 86 14 chr15 37789885 37789955 -63590566 + MLT1K LTR MaLR 141 215 -373 631 245 84 51 chr15 37790036 37790273 -63590248 + MLT1K LTR MaLR 319 563 -25 257 286 0 58 chr15 37791275 37791429 -63589092 - L1ME3A LINE L1 -231 5939 5795 320 138 31 0 chr15 37791471 37791536 -63588985 + MER52A LTR ERV1 1 67 -1688 5495 177 158 10 chr15 37792161 37793408 -63587113 + MER52A LTR ERV1 366 1755 0 307 203 0 14 chr15 37793424 37793498 -63587023 + HsTC2 DNA Tc2 1 73 -1825 2741 94 29 0 chr15 37793555 37794000 -63586521 - MER1A DNA MER1_type 0 529 32 809 267 84 11 chr15 37794075 37794441 -63586080 - L1ME3A LINE L1 -457 5713 5320 452 321 91 62 chr15 37794511 37794885 -63585636 + L1ME4a LINE L1 5580 5964 -157 321 303 91 20 chr15 37794830 37794929 -63585592 - L1MC4 LINE L1 -1324 6718 6613 * 673 297 86 49 chr15 37794952 37795389 -63585132 + L1ME4a LINE L1 4297 4758 -1388 779 134 8 47 chr15 37795393 37795520 -63585001 + FLAM_C SINE Alu 2 123 -20 285 75 0 0 chr15 37795527 37795567 -63584954 + (CA)n Simple_repeat Simple_repeat 2 41 0 714 250 35 12 chr15 37796077 37796249 -63584272 - MER5B DNA MER1_type -2 176 1 604 285 47 19 chr15 37796282 37796538 -63583983 + L1ME4a LINE L1 5401 5663 -2145 324 251 113 69 chr15 37797471 37797790 -63582731 + L1ME4a LINE L1 5789 6121 0 204 329 14 14 chr15 37797868 37797941 -63582580 - MIR SINE MIR -6 256 184 333 297 242 34 chr15 37798235 37798504 -63582017 + L3 LINE CR1 1250 1574 -3 180 0 0 0 chr15 37798902 37798922 -63581599 + (A)n Simple_repeat Simple_repeat 1 20 0 635 224 42 104 chr15 37799009 37799268 -63581253 + MIR SINE MIR 20 262 0 725 291 170 21 chr15 37799377 37799867 -63580654 - L2 LINE L2 -1 3271 2660 2164 56 0 4 chr15 37799867 37800134 -63580387 + L1PA5 LINE L1 5889 6154 0 725 291 170 21 chr15 37800134 37800339 -63580182 - L2 LINE L2 -612 2660 2487 2138 283 122 19 chr15 37800928 37802092 -63578429 + L2 LINE L2 2010 3312 -1 506 91 13 0 chr15 37802397 37802474 -63578047 - MSTC LTR MaLR 0 428 351 608 205 54 0 chr15 37802493 37802605 -63577916 - AluSq/x SINE Alu -194 119 2 1681 180 53 3 chr15 37802606 37802929 -63577592 - MSTD LTR MaLR -56 340 2 336 226 57 47 chr15 37803199 37803305 -63577216 + L1ME4a LINE L1 5770 5876 -245 2150 172 9 0 chr15 37803353 37803696 -63576825 + MER7A DNA MER2_type 3 346 0 25 0 0 0 chr15 37803781 37803806 -63576715 + AT_rich Low_complexity Low_complexity 1 25 0 554 258 68 0 chr15 37804049 37804181 -63576340 - MIR SINE MIR -109 153 13 961 181 28 0 chr15 37804627 37804809 -63575712 - MSTD LTR MaLR -198 198 12 220 295 0 0 chr15 37805424 37805485 -63575036 - MIR SINE MIR -29 233 173 419 162 54 0 chr15 37805524 37805598 -63574923 + MIR SINE MIR 76 153 -109 21 36 0 0 chr15 37806733 37806761 -63573760 + AT_rich Low_complexity Low_complexity 1 28 0 1981 151 0 0 chr15 37806962 37807246 -63573275 + AluJo SINE Alu 1 284 -28 210 37 0 0 chr15 37808116 37808143 -63572378 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 221 282 28 14 chr15 37809667 37809738 -63570783 + GA-rich Low_complexity Low_complexity 3 74 0 1839 128 95 0 chr15 37809768 37810042 -63570479 - AluSx SINE Alu -12 300 1 415 275 33 0 chr15 37811746 37811837 -63568684 + MIR SINE MIR 94 187 -75 286 273 45 0 chr15 37813028 37813116 -63567405 - MLT1K LTR MaLR 0 588 497 434 309 55 27 chr15 37813624 37813880 -63566641 + L1ME1 LINE L1 5660 5922 -244 * 2130 171 89 9 chr15 37813660 37814088 -63566433 + L1PA16 LINE L1 5703 6164 -2 24 0 0 0 chr15 37814196 37814220 -63566301 + AT_rich Low_complexity Low_complexity 1 24 0 915 211 0 0 chr15 37814220 37814376 -63566145 - FRAM SINE Alu -23 153 1 1211 258 56 15 chr15 37814417 37814809 -63565712 - L1ME3A LINE L1 -17 6153 5746 711 185 50 0 chr15 37814991 37815110 -63565411 + FLAM_C SINE Alu 1 125 -18 379 349 42 6 chr15 37815432 37815598 -63564923 - MIR SINE MIR -3 259 88 348 323 0 0 chr15 37815981 37816077 -63564444 - MER81 DNA DNA 0 114 19 461 309 100 14 chr15 37816288 37816498 -63564023 + MIR SINE MIR 23 250 -12 1636 191 10 19 chr15 37816703 37817012 -63563509 + AluJb SINE Alu 1 306 -6 496 250 103 0 chr15 37817188 37817344 -63563177 - L1ME3A LINE L1 -244 5926 5755 316 292 9 26 chr15 37817927 37818040 -63562481 - MLT1K LTR MaLR -437 151 41 1803 177 17 0 chr15 37818077 37818371 -63562150 + AluJo SINE Alu 4 302 -10 303 281 74 25 chr15 37818394 37818515 -63562006 + MIR3 SINE MIR 78 204 -4 519 221 145 95 chr15 37818865 37819127 -63561394 + MLT1E1 LTR MaLR 304 578 -76 1149 204 40 27 chr15 37819265 37819299 -63561222 - MLT2D LTR ERVL 0 414 382 222 37 0 0 chr15 37819299 37819326 -63561195 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 408 20 0 0 chr15 37819325 37819374 -63561147 + (TG)n Simple_repeat Simple_repeat 1 49 0 1149 204 40 27 chr15 37819326 37819390 -63561131 - MLT2D LTR ERVL -32 382 320 2302 116 10 0 chr15 37819390 37819693 -63560828 - AluSq SINE Alu -7 306 1 1149 204 40 27 chr15 37819693 37819940 -63560581 - MLT2D LTR ERVL -94 320 112 706 222 0 0 chr15 37819944 37820079 -63560442 - AluJo SINE Alu -176 136 2 395 203 29 0 chr15 37820083 37820196 -63560325 - MLT2C1 LTR ERVL -310 87 1 322 264 141 49 chr15 37820224 37820387 -63560134 - L1M4 LINE L1 -2175 3971 3794 1133 236 51 56 chr15 37820971 37821521 -63559000 - MER77 LTR ERV1 -4 601 54 1354 279 47 18 chr15 37821649 37821768 -63558753 - MER90 LTR ERV1 0 614 500 261 0 0 0 chr15 37821768 37821797 -63558724 + (TG)n Simple_repeat Simple_repeat 1 29 0 1354 279 47 18 chr15 37821797 37822183 -63558338 - MER90 LTR ERV1 -114 500 94 238 330 41 0 chr15 37822223 37822320 -63558201 + MIR SINE MIR 118 218 -44 1871 156 12 38 chr15 37822585 37822905 -63557616 + AluJb SINE Alu 1 312 0 2405 231 56 1 chr15 37822915 37823578 -63556943 + L1ME LINE L1 3763 4461 -1685 254 169 15 0 chr15 37823578 37823643 -63556878 + GA-rich Low_complexity Low_complexity 3 68 0 1943 142 30 17 chr15 37828334 37828630 -63551891 - AluJb SINE Alu -12 300 1 232 305 24 0 chr15 37828734 37828816 -63551705 + MER117 DNA MER1_type 4 87 -110 288 298 137 38 chr15 37828990 37829121 -63551400 + MER5A DNA MER1_type 45 188 -1 21 0 0 0 chr15 37830204 37830225 -63550296 + AT_rich Low_complexity Low_complexity 1 21 0 1294 182 0 0 chr15 37830266 37830469 -63550052 - AluJb SINE Alu -23 289 87 339 264 40 95 chr15 37830783 37830931 -63549590 + L1ME LINE L1 4525 4664 -1482 1847 162 0 0 chr15 37830936 37831214 -63549307 + AluSx SINE Alu 1 278 -34 326 123 18 0 chr15 37831215 37831272 -63549249 + G-rich Low_complexity Low_complexity 3 60 0 243 0 0 0 chr15 37831273 37831300 -63549221 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 561 285 76 55 chr15 37831296 37831791 -63548730 + L1ME LINE L1 4655 5158 -988 688 272 80 38 chr15 37831825 37832251 -63548270 + L1ME LINE L1 5259 5702 -468 2827 138 6 4 chr15 37832300 37832799 -63547722 + L1 LINE L1 3374 3873 -2273 2619 107 0 3 chr15 37832829 37833203 -63547318 + MER66A-int LTR ERV1 6304 6676 0 1342 210 35 12 chr15 37833210 37833618 -63546903 + MER66A LTR ERV1 27 478 0 952 192 17 0 chr15 37834356 37834528 -63545993 - MIR SINE MIR -71 191 17 1164 173 93 3 chr15 37835250 37835539 -63544982 - MER33 DNA MER1_type 0 324 10 201 263 79 13 chr15 37835796 37835872 -63544649 + MIR SINE MIR 118 198 -64 409 304 99 22 chr15 37835914 37836095 -63544426 - MIR SINE MIR -32 230 36 2444 94 0 0 chr15 37837256 37837563 -63542958 - AluSq SINE Alu -6 307 1 243 0 0 0 chr15 37837735 37837762 -63542759 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 27 62 0 0 chr15 37837824 37837872 -63542649 + AT_rich Low_complexity Low_complexity 1 48 0 315 284 149 51 chr15 37837952 37838338 -63542183 - L2 LINE L2 -170 3143 2716 404 238 120 49 chr15 37840917 37841089 -63539432 - MIR SINE MIR -39 223 35 2210 117 3 3 chr15 37841901 37842208 -63538313 + AluSq SINE Alu 1 307 -6 232 340 94 25 chr15 37842296 37842455 -63538066 - MIR SINE MIR -30 232 63 940 200 47 0 chr15 37845404 37845594 -63534927 + MIR SINE MIR 18 216 -46 547 235 50 58 chr15 37846449 37846482 -63534039 - MIR SINE MIR -33 229 197 8190 58 9 5 chr15 37846482 37847485 -63533036 + LTR13 LTR ERVK 1 1007 0 547 235 50 58 chr15 37847485 37847673 -63532848 - MIR SINE MIR -65 197 13 22 0 0 0 chr15 37850793 37850815 -63529706 + AT_rich Low_complexity Low_complexity 1 22 0 1697 173 10 30 chr15 37850824 37851119 -63529402 + AluJo SINE Alu 1 289 -23 1349 200 55 10 chr15 37851859 37852169 -63528352 - MER33 DNA MER1_type 0 324 1 608 324 52 34 chr15 37852845 37853169 -63527352 + MLT1K LTR MaLR 61 390 -198 1592 248 205 6 chr15 37853213 37853749 -63526772 + MER69 DNA AcHobo 1 643 -583 1299 271 165 6 chr15 37853904 37854446 -63526075 + MLT1G LTR MaLR 1 590 0 876 166 29 191 chr15 37854446 37854789 -63525732 + MER69 DNA AcHobo 2045 2291 -235 2013 153 0 0 chr15 37854789 37855090 -63525431 - AluSx SINE Alu -5 307 7 876 166 29 191 chr15 37855090 37855222 -63525299 + MER69 DNA AcHobo 2291 2443 -83 373 230 82 22 chr15 37855407 37855542 -63524979 - MIR SINE MIR -89 173 31 264 204 0 0 chr15 37856103 37856152 -63524369 - L2 LINE L2 0 3313 3265 183 42 0 0 chr15 37856707 37856731 -63523790 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr15 37857925 37857949 -63522572 + AT_rich Low_complexity Low_complexity 1 24 0 2401 97 0 10 chr15 37858673 37858983 -63521538 + AluSx SINE Alu 1 307 -5 2440 102 0 0 chr15 37860344 37860648 -63519873 + AluSx SINE Alu 1 304 -8 2199 104 0 0 chr15 37861201 37861490 -63519031 + AluSq SINE Alu 1 289 -24 1796 153 35 11 chr15 37861617 37861904 -63518617 + AluJo SINE Alu 1 294 -18 2286 112 3 3 chr15 37862304 37862607 -63517914 + AluSq SINE Alu 3 305 -8 950 251 26 26 chr15 37863152 37863455 -63517066 + L1ME3 LINE L1 5860 6162 0 1146 221 26 145 chr15 37863689 37864166 -63516355 + HAL1 LINE L1 549 1081 -1426 2737 152 12 0 chr15 37864166 37864595 -63515926 - MER57B LTR ERV1 0 434 1 1146 221 26 145 chr15 37864595 37864816 -63515705 + HAL1 LINE L1 1081 1151 -1356 1999 169 0 6 chr15 37864816 37865129 -63515392 + AluJb SINE Alu 1 311 -1 1146 221 26 145 chr15 37865129 37865193 -63515328 + HAL1 LINE L1 1151 1221 -1286 311 212 12 0 chr15 37865207 37865292 -63515229 + CT-rich Low_complexity Low_complexity 1 86 0 233 197 16 0 chr15 37865292 37865353 -63515168 - FAM SINE Alu 0 179 118 887 252 132 48 chr15 37865366 37865807 -63514714 + HAL1 LINE L1 1233 1710 -797 209 94 31 0 chr15 37865830 37865862 -63514659 + MER5A DNA MER1_type 43 75 -114 * 429 261 76 0 chr15 37865858 37865950 -63514571 - MER5A DNA MER1_type -83 106 8 572 235 130 43 chr15 37865953 37866521 -63514000 + HAL1 LINE L1 1692 2359 -148 2074 122 31 0 chr15 37866521 37866809 -63513712 + AluSg SINE Alu 1 297 -13 572 235 130 43 chr15 37866809 37866936 -63513585 + HAL1 LINE L1 2359 2474 -33 2375 105 0 0 chr15 37866949 37867243 -63513278 + AluSp SINE Alu 1 294 -19 390 226 69 0 chr15 37867593 37867695 -63512826 - MLT1K LTR MaLR 0 588 480 228 215 283 62 chr15 37867706 37867844 -63512677 + MIR SINE MIR 47 153 -109 2083 150 134 8 chr15 37867844 37868224 -63512297 - MSTA LTR MaLR 0 428 1 228 215 283 62 chr15 37868224 37868262 -63512259 + MIR SINE MIR 153 262 0 2444 82 0 7 chr15 37868262 37868568 -63511953 + AluY SINE Alu 2 305 -6 569 290 76 32 chr15 37868580 37868894 -63511627 + L1MC/D LINE L1 1340 1690 -886 451 287 53 40 chr15 37869258 37869418 -63511103 + L1MC/D LINE L1 2053 2174 -4041 2178 132 0 0 chr15 37869418 37869721 -63510800 + AluSx SINE Alu 1 303 -9 451 287 53 40 chr15 37869721 37869797 -63510724 + L1MC/D LINE L1 2174 2248 -3967 682 276 70 75 chr15 37869871 37870540 -63509981 + L1MC/D LINE L1 2279 2944 -3271 3367 148 77 159 chr15 37870556 37871111 -63509410 - L1MC3 LINE L1 -6 7779 7180 341 238 0 48 chr15 37871111 37871216 -63509305 - MLT1F1 LTR MaLR -433 134 35 3367 148 77 159 chr15 37871216 37871439 -63509082 - L1MC3 LINE L1 -605 7180 6940 2321 91 0 20 chr15 37871439 37871737 -63508784 - AluSx SINE Alu -20 292 1 3367 148 77 159 chr15 37871737 37872075 -63508446 - L1MC3 LINE L1 -845 6940 6683 351 0 0 0 chr15 37872075 37872114 -63508407 + (TG)n Simple_repeat Simple_repeat 2 40 0 3367 148 77 159 chr15 37872114 37872279 -63508242 - L1MC3 LINE L1 -1102 6683 6506 2225 128 0 25 chr15 37872312 37872632 -63507889 + AluSx SINE Alu 1 312 0 559 273 134 27 chr15 37872746 37873185 -63507336 + L1MC/D LINE L1 4538 4929 -1421 1960 158 7 0 chr15 37873185 37873476 -63507045 - AluJb SINE Alu -19 293 1 559 273 134 27 chr15 37873476 37873949 -63506572 + L1MC/D LINE L1 4929 5555 -795 1384 180 36 36 chr15 37874487 37874821 -63505700 - MLT2D LTR ERVL -9 405 64 1216 212 90 61 chr15 37874839 37875145 -63505376 - LTR16A1 LTR ERVL 0 457 133 2033 173 73 5 chr15 37875145 37875515 -63505006 + MLT2C1 LTR ERVL 1 395 -2 1216 212 90 61 chr15 37875515 37875652 -63504869 - LTR16A1 LTR ERVL -324 133 1 1136 306 30 50 chr15 37875822 37876397 -63504124 - ERVL LTR ERVL -422 5342 4780 890 294 48 3 chr15 37876610 37876919 -63503602 - ERVL LTR ERVL -1274 4490 4168 315 49 0 0 chr15 37877347 37877388 -63503133 + (CA)n Simple_repeat Simple_repeat 2 42 0 458 287 80 39 chr15 37877633 37877825 -63502696 + MIR SINE MIR 42 248 -14 1561 229 78 14 chr15 37877937 37878373 -63502148 + LTR16B LTR ERVL 1 464 0 4339 182 35 31 chr15 37879271 37880197 -63500324 - L1MC1 LINE L1 -220 6113 5184 2387 102 3 0 chr15 37880197 37880500 -63500021 - AluSx SINE Alu -8 304 1 4339 182 35 31 chr15 37880500 37881417 -63499104 - L1MC1 LINE L1 -1149 5184 4272 435 309 106 35 chr15 37881417 37881673 -63498848 - L1 LINE L1 -1149 4997 4724 900 138 0 0 chr15 37881713 37881836 -63498685 - FLAM_C SINE Alu -9 124 2 1881 141 13 10 chr15 37881974 37882280 -63498241 - AluSq SINE Alu -6 307 1 204 0 0 36 chr15 37882293 37882321 -63498200 + (TTTA)n Simple_repeat Simple_repeat 2 108 0 1914 131 3 50 chr15 37882321 37882618 -63497903 - AluSx SINE Alu -29 283 1 361 198 0 12 chr15 37882620 37882701 -63497820 - L1PB4 LINE L1 -4 6152 6073 693 167 47 11 chr15 37882721 37882925 -63497596 + LTR1 LTR ERV1 1 252 -533 * 1290 68 117 10 chr15 37882921 37883127 -63497394 + LTR1 LTR ERV1 558 785 0 3859 131 5 2 chr15 37883129 37883725 -63496796 - L1PA16 LINE L1 -122 6044 5447 228 196 20 0 chr15 37883726 37883777 -63496744 + L1M4 LINE L1 2984 3035 -3111 1449 159 13 121 chr15 37883782 37884096 -63496425 + AluJo SINE Alu 1 280 -32 515 178 0 9 chr15 37884106 37884213 -63496308 + GA-rich Low_complexity Low_complexity 2 107 0 2593 193 17 52 chr15 37884230 37884883 -63495638 - L1 LINE L1 -743 5403 4774 1215 184 12 0 chr15 37884917 37885162 -63495359 + L1MB1 LINE L1 5938 6185 -4 790 164 29 18 chr15 37885201 37885372 -63495149 + L1MA10 LINE L1 6161 6333 -1 575 215 114 13 chr15 37885389 37885626 -63494895 + L1M4 LINE L1 3052 3312 -2834 240 236 18 0 chr15 37885626 37885681 -63494840 + MIR3 SINE MIR 128 183 -25 777 251 67 50 chr15 37886875 37887234 -63493287 - MLT1A1 LTR MaLR 0 365 1 273 301 29 0 chr15 37887928 37888031 -63492490 - MIR SINE MIR 0 262 157 2294 100 0 7 chr15 37888198 37888498 -63492023 + AluSx SINE Alu 1 298 -14 2396 132 22 27 chr15 37888749 37889158 -63491363 - MSTB1 LTR MaLR -2 430 24 333 335 118 32 chr15 37889529 37890104 -63490417 + L1MEd LINE L1 672 1197 -1293 1751 174 33 10 chr15 37890104 37890403 -63490118 - AluJo SINE Alu -6 306 1 333 335 118 32 chr15 37890403 37890430 -63490091 + L1MEd LINE L1 1197 1220 -1270 1833 165 3 25 chr15 37890430 37890746 -63489775 + AluJo SINE Alu 1 309 -3 333 335 118 32 chr15 37890746 37891044 -63489477 + L1MEd LINE L1 1220 1748 -742 2084 115 11 0 chr15 37891285 37891564 -63488957 + AluSx SINE Alu 1 282 -30 962 200 46 143 chr15 37891789 37892245 -63488276 + L1ME2 LINE L1 5726 6137 -27 284 117 67 17 chr15 37892835 37892895 -63487626 + MER5B DNA MER1_type 113 175 -3 299 170 38 0 chr15 37893168 37893221 -63487300 + Tigger5 DNA MER2_type 1 55 -2268 * 302 232 58 0 chr15 37893190 37893259 -63487262 + Tigger5 DNA MER2_type 2251 2323 0 388 253 50 10 chr15 37893900 37893999 -63486522 + MER91C DNA MER1_type 38 140 0 3178 94 11 0 chr15 37894212 37894647 -63485874 - LTR22A LTR ERVK -18 440 1 526 174 0 0 chr15 37895401 37895487 -63485034 - L2 LINE L2 -3 3310 3225 362 288 25 44 chr15 37897994 37898122 -63482399 + MIR SINE MIR 31 157 -105 2505 94 0 0 chr15 37898122 37898429 -63482092 + AluSc SINE Alu 1 307 -2 362 288 25 44 chr15 37898429 37898460 -63482061 + MIR SINE MIR 157 187 -75 337 278 45 118 chr15 37900157 37900488 -63480033 - L2 LINE L2 -5 3267 2961 329 255 0 29 chr15 37902030 37902132 -63478389 + MER5B DNA MER1_type 72 170 -8 808 229 78 5 chr15 37903040 37903134 -63477387 - MIR SINE MIR -16 246 160 2272 64 44 17 chr15 37903134 37903432 -63477089 + AluY SINE Alu 1 306 -5 808 229 78 5 chr15 37903432 37903555 -63476966 - MIR SINE MIR -102 160 13 769 198 4 110 chr15 37903619 37903856 -63476665 - MER20 DNA MER1_type -7 212 1 1334 199 54 51 chr15 37904371 37904743 -63475778 + MLT1B LTR MaLR 3 375 -15 635 217 126 14 chr15 37906985 37907192 -63473329 + MIR SINE MIR 14 243 -19 452 270 75 46 chr15 37907334 37907725 -63472796 + MLT1H LTR MaLR 26 549 0 288 322 0 11 chr15 37907729 37907819 -63472702 - L3 LINE CR1 -112 1465 1377 278 253 96 36 chr15 37909062 37909145 -63471376 - L2 LINE L2 -36 3277 3190 320 264 6 0 chr15 37910222 37910396 -63470125 + (CA)n Simple_repeat Simple_repeat 1 175 0 228 320 0 0 chr15 37910408 37910617 -63469904 + (CA)n Simple_repeat Simple_repeat 1 209 0 2532 55 0 3 chr15 37912300 37912629 -63467892 - L1PA6 LINE L1 -6 6148 5821 224 254 84 0 chr15 37912659 37912730 -63467791 - L2 LINE L2 -2 3270 3194 241 274 94 0 chr15 37913695 37913801 -63466720 + MER3 DNA MER1_type 1 116 -93 750 183 104 0 chr15 37918087 37918251 -63462270 - MER20 DNA MER1_type 0 219 39 271 271 93 17 chr15 37918308 37918426 -63462095 + MER94 DNA DNA 7 133 -1 483 253 213 15 chr15 37922914 37923116 -63457405 - MIR SINE MIR -1 261 20 384 239 57 25 chr15 37923119 37923139 -63457382 - L1MA10 LINE L1 0 6334 6315 718 216 165 17 chr15 37923139 37923375 -63457146 - L1ME2 LINE L1 -9 6155 5885 2337 112 3 0 chr15 37923760 37924065 -63456456 - AluSx SINE Alu -6 306 1 231 307 40 54 chr15 37924320 37924597 -63455924 + L1ME4a LINE L1 5814 6086 -35 330 224 12 0 chr15 37925210 37925295 -63455226 + L1ME3A LINE L1 6085 6170 0 1205 168 15 0 chr15 37925527 37925730 -63454791 + AluJo SINE Alu 84 289 -23 1661 164 75 14 chr15 37925963 37926256 -63454265 - AluJo SINE Alu -1 311 1 257 299 0 41 chr15 37926265 37926362 -63454159 + L1ME LINE L1 5714 5806 -315 1220 157 20 24 chr15 37926807 37927062 -63453459 - L1MB3 LINE L1 -10 6173 5920 1530 243 63 24 chr15 37927268 37927793 -63452728 + MLT1F LTR MaLR 32 542 0 356 194 0 0 chr15 37928065 37928127 -63452394 + LTR67 LTR ERVL 496 557 0 508 260 91 19 chr15 37928315 37928469 -63452052 - MIR SINE MIR 0 262 98 217 353 12 0 chr15 37929101 37929186 -63451335 - L2 LINE L2 -1 3312 3227 2513 81 0 0 chr15 37929187 37929494 -63451027 + AluY SINE Alu 1 307 -4 1076 151 25 5 chr15 37929591 37929790 -63450731 + L1MD3 LINE L1 7623 7825 -170 2283 100 3 3 chr15 37929913 37930203 -63450318 + AluSx SINE Alu 1 290 -22 2348 88 16 3 chr15 37930353 37930658 -63449863 + AluSc SINE Alu 1 309 0 26 74 0 0 chr15 37931570 37931624 -63448897 + AT_rich Low_complexity Low_complexity 1 54 0 26 30 0 0 chr15 37931770 37931803 -63448718 + AT_rich Low_complexity Low_complexity 1 33 0 2073 166 0 0 chr15 37932102 37932409 -63448112 + AluJb SINE Alu 1 307 -5 469 250 9 0 chr15 37932456 37932568 -63447953 + MARNA DNA Mariner 291 403 -183 21 0 0 0 chr15 37932855 37932876 -63447645 + AT_rich Low_complexity Low_complexity 1 21 0 2310 114 0 0 chr15 37932886 37933184 -63447337 - AluSx SINE Alu -12 300 3 211 350 125 8 chr15 37933236 37933356 -63447165 - MIR3 SINE MIR -65 143 10 1638 186 3 17 chr15 37933960 37934251 -63446270 + AluJo SINE Alu 21 305 -7 2300 61 3 27 chr15 37934507 37934875 -63445646 + AluY SINE Alu 1 311 0 1387 167 96 65 chr15 37935000 37935384 -63445137 + MSTD LTR MaLR 1 396 0 3905 127 24 56 chr15 37936018 37936783 -63443738 + L1MB2 LINE L1 5430 6169 -2 1731 155 3 30 chr15 37936925 37937221 -63443300 - AluJb SINE Alu -18 294 7 24 32 0 0 chr15 37937432 37937463 -63443058 + AT_rich Low_complexity Low_complexity 1 31 0 388 331 54 41 chr15 37937724 37937966 -63442555 - L2 LINE L2 0 3272 3028 1813 146 10 20 chr15 37938313 37938615 -63441906 - AluSx SINE Alu -13 299 1 207 0 0 0 chr15 37939268 37939291 -63441230 + (A)n Simple_repeat Simple_repeat 1 23 0 2572 199 46 52 chr15 37940122 37940394 -63440127 + L1ME1 LINE L1 5479 5751 -415 2310 79 7 16 chr15 37940394 37940698 -63439823 - AluY SINE Alu -10 301 1 2572 199 46 52 chr15 37940698 37941098 -63439423 + L1ME1 LINE L1 5751 6147 -19 1536 155 47 51 chr15 37941372 37941668 -63438853 + AluJo SINE Alu 1 295 -17 316 232 0 50 chr15 37941912 37942011 -63438510 + L1ME4a LINE L1 5975 6068 -53 23 0 0 0 chr15 37942606 37942629 -63437892 + AT_rich Low_complexity Low_complexity 1 23 0 2082 117 27 13 chr15 37943902 37944202 -63436319 + AluSx SINE Alu 1 304 -8 2126 133 3 3 chr15 37944661 37944963 -63435558 + AluSx SINE Alu 1 302 -10 2042 134 0 38 chr15 37945009 37945329 -63435192 - AluJo SINE Alu -4 308 1 338 296 273 23 chr15 37945736 37946132 -63434389 + L2 LINE L2 2819 3313 0 410 298 142 10 chr15 37947456 37947661 -63432860 - MIR SINE MIR -15 247 16 2180 117 0 3 chr15 37947966 37948293 -63432228 - AluSx SINE Alu 0 312 1 460 187 84 18 chr15 37948326 37948492 -63432029 - Charlie1a DNA MER1_type 0 1455 1279 3534 182 48 30 chr15 37948501 37949370 -63431151 - Charlie1a DNA MER1_type -316 1139 255 192 40 0 0 chr15 37949370 37949395 -63431126 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 2170 125 0 28 chr15 37949397 37949717 -63430804 + AluSq SINE Alu 1 311 -2 1235 213 12 0 chr15 37949725 37949965 -63430556 + AluJo SINE Alu 60 302 -10 264 262 16 0 chr15 37949968 37950029 -63430492 - Charlie1a DNA MER1_type -1207 248 187 826 207 9 70 chr15 37950059 37950272 -63430249 - Charlie1a DNA MER1_type -1250 205 6 1380 148 14 9 chr15 37950373 37950590 -63429931 + AluJb SINE Alu 1 218 -94 300 120 0 0 chr15 37950591 37950641 -63429880 + AluJb SINE Alu 85 134 -168 9122 41 5 9 chr15 37950643 37952546 -63427975 + L1PA5 LINE L1 4248 6147 -7 1105 162 0 0 chr15 37952604 37952777 -63427744 + AluJb SINE Alu 120 292 -20 211 316 0 40 chr15 37953210 37953310 -63427211 - MIR SINE MIR -68 140 56 1656 155 61 0 chr15 37953580 37953844 -63426677 - AluJo SINE Alu -21 291 12 951 222 68 0 chr15 37953883 37954090 -63426431 + MER58A DNA MER1_type 1 221 -3 229 26 53 0 chr15 37955181 37955219 -63425302 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 33 90 0 0 chr15 37955484 37955573 -63424948 + AT_rich Low_complexity Low_complexity 1 89 0 3385 157 29 7 chr15 37955766 37956386 -63424135 + L1MB8 LINE L1 5488 6121 -57 1548 210 10 16 chr15 37956386 37956691 -63423830 - AluJb SINE Alu -9 303 1 947 212 22 0 chr15 37956722 37956906 -63423615 - MER5A DNA MER1_type -1 188 1 787 252 97 8 chr15 37957094 37957332 -63423189 - MIR SINE MIR -3 259 1 1663 126 0 40 chr15 37958306 37958402 -63422119 + AluSq SINE Alu 42 140 -173 2073 125 0 20 chr15 37958402 37958706 -63421815 + AluSx SINE Alu 1 298 -14 1663 126 0 40 chr15 37958706 37958887 -63421634 + AluSq SINE Alu 140 308 -5 388 324 21 28 chr15 37959428 37959570 -63420951 + MER5A DNA MER1_type 1 141 -48 2032 116 0 0 chr15 37959584 37959914 -63420607 + AluSx SINE Alu 1 330 0 286 258 0 0 chr15 37960200 37960262 -63420259 + MIR SINE MIR 84 145 -117 1959 292 66 19 chr15 37960331 37961339 -63419182 - L2 LINE L2 -2 3311 2256 251 339 69 15 chr15 37961927 37962057 -63418464 + L2 LINE L2 3133 3269 -3 252 284 255 34 chr15 37963714 37963922 -63416599 + MIR SINE MIR 9 262 0 737 173 54 43 chr15 37963982 37964167 -63416354 + MER5A DNA MER1_type 1 187 -2 789 214 94 20 chr15 37964178 37964379 -63416142 - MER20 DNA MER1_type -1 218 3 408 236 207 0 chr15 37964389 37964539 -63415982 - MER5A DNA MER1_type 0 189 4 26 50 0 0 chr15 37965735 37965775 -63414746 + AT_rich Low_complexity Low_complexity 1 40 0 247 329 0 0 chr15 37967104 37967174 -63413347 + MER5A DNA MER1_type 45 114 -75 25 65 0 0 chr15 37967401 37967447 -63413074 + AT_rich Low_complexity Low_complexity 1 46 0 1465 267 114 7 chr15 37967480 37968065 -63412456 - HAL1 LINE L1 -405 2102 1455 1299 259 48 73 chr15 37968118 37968655 -63411866 + L1MB1 LINE L1 764 1287 -5366 1110 243 3 10 chr15 37968946 37969238 -63411283 + L1MB1 LINE L1 1494 1783 -4870 1379 203 24 71 chr15 37969245 37969709 -63410812 + L1MB1 LINE L1 3949 4390 -2342 * 4698 159 26 23 chr15 37969687 37970155 -63410366 + L1MB1 LINE L1 5378 5843 -911 1934 144 32 12 chr15 37970155 37970431 -63410090 - MER7A DNA MER2_type -2692 346 62 1728 52 0 9 chr15 37970431 37970641 -63409880 + AluY SINE Alu 1 208 -103 1934 144 32 12 chr15 37970641 37970705 -63409816 - MER7A DNA MER2_type -2976 62 1 4698 159 26 23 chr15 37970705 37971611 -63408910 + L1MB1 LINE L1 5843 6752 -2 1997 148 20 0 chr15 37972160 37972465 -63408056 - AluJb SINE Alu -1 311 1 27 29 0 0 chr15 37973728 37973762 -63406759 + AT_rich Low_complexity Low_complexity 1 34 0 4241 148 29 4 chr15 37973763 37974738 -63405783 - L1MA8 LINE L1 -268 6023 5030 710 236 46 15 chr15 37975548 37975743 -63404778 + MIR SINE MIR 56 256 -6 1435 102 12 136 chr15 37975980 37976343 -63404178 - AluY SINE Alu 0 323 1 636 129 20 0 chr15 37976369 37976470 -63404051 + AluSg/x SINE Alu 189 291 -19 492 68 0 0 chr15 37976471 37976544 -63403977 + (GA)n Simple_repeat Simple_repeat 1 73 0 348 224 229 6 chr15 37976630 37976800 -63403721 + L1M4 LINE L1 4458 4665 -1481 746 191 16 0 chr15 37976801 37976927 -63403594 + FLAM_A SINE Alu 1 128 -5 1817 160 10 24 chr15 37976974 37977267 -63403254 - AluJb SINE Alu -23 289 1 1999 131 24 3 chr15 37977272 37977569 -63402952 - AluSp SINE Alu -10 303 1 2285 94 0 3 chr15 37977774 37978072 -63402449 - AluSq SINE Alu -16 297 1 1828 177 0 0 chr15 37978323 37978617 -63401904 + AluJb SINE Alu 1 294 -18 703 192 16 35 chr15 37978643 37978955 -63401566 + MLT1A1 LTR MaLR 1 396 0 395 333 74 28 chr15 37978955 37979207 -63401314 + L1ME3A LINE L1 5368 5634 -528 650 214 78 89 chr15 37979307 37979564 -63400957 + MER77 LTR ERV1 130 383 -222 241 238 95 24 chr15 37979576 37979660 -63400861 + MER68 LTR ERV1 254 343 -219 454 219 19 0 chr15 37979748 37979853 -63400668 + MER77 LTR ERV1 499 605 0 315 276 45 37 chr15 37979853 37980020 -63400501 + L1ME3A LINE L1 5723 5889 -307 1880 124 14 21 chr15 37980757 37981047 -63399474 - AluSx SINE Alu -22 290 3 436 200 208 8 chr15 37981099 37981219 -63399302 + Tigger1 DNA MER2_type 1 144 -2274 2105 118 10 0 chr15 37981223 37981512 -63399009 - AluSx SINE Alu -20 292 1 949 165 65 15 chr15 37981534 37981734 -63398787 + Tigger1 DNA MER2_type 2209 2418 0 596 271 44 33 chr15 37981741 37981922 -63398599 - MIR3 SINE MIR -10 198 16 376 304 62 0 chr15 37982209 37982321 -63398200 - L2 LINE L2 0 3272 3154 1909 162 26 3 chr15 37984213 37984516 -63396005 - AluJb SINE Alu -2 310 1 1987 149 0 3 chr15 37985043 37985339 -63395182 - AluJb SINE Alu -17 295 1 23 0 0 0 chr15 37985745 37985768 -63394753 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr15 37986207 37986228 -63394293 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr15 37986885 37986916 -63393605 + AT_rich Low_complexity Low_complexity 1 31 0 680 204 99 7 chr15 37987438 37987590 -63392931 - FRAM SINE Alu 0 166 1 2310 65 0 31 chr15 37987688 37987979 -63392542 - AluY SINE Alu -13 298 17 455 271 44 17 chr15 37988777 37988958 -63391563 - L1MC5 LINE L1 -80 7881 7696 1668 131 23 65 chr15 37988989 37989295 -63391226 - AluJo SINE Alu -19 293 1 318 245 41 20 chr15 37989307 37989405 -63391116 - L1MC5 LINE L1 -262 7699 7600 322 301 125 0 chr15 37989600 37989736 -63390785 + L2 LINE L2 3161 3313 0 1852 242 153 14 chr15 37989858 37990264 -63390257 + L2 LINE L2 1748 2096 -1218 1936 137 7 3 chr15 37990264 37990549 -63389972 - AluSx SINE Alu -26 286 1 1852 242 153 14 chr15 37990549 37990861 -63389660 + L2 LINE L2 2096 2566 -748 570 225 191 65 chr15 37990858 37991151 -63389370 + L2 LINE L2 2967 3296 -17 * 375 270 74 18 chr15 37992230 37992393 -63388128 + MER104 DNA Tc2 1 172 -8 891 150 0 0 chr15 37992906 37993039 -63387482 - FLAM_C SINE Alu 0 133 1 309 51 0 0 chr15 37993217 37993256 -63387265 + (TG)n Simple_repeat Simple_repeat 2 40 0 1491 178 18 32 chr15 37993366 37993497 -63387024 + AluJo SINE Alu 1 132 -180 2247 121 0 6 chr15 37993497 37993811 -63386710 + AluSx SINE Alu 1 312 0 1491 178 18 32 chr15 37993811 37993960 -63386561 + AluJo SINE Alu 132 277 -35 22 0 0 0 chr15 37993961 37993983 -63386538 + AT_rich Low_complexity Low_complexity 1 22 0 264 273 0 0 chr15 37994174 37994229 -63386292 + (CA)n Simple_repeat Simple_repeat 2 56 0 2070 121 17 0 chr15 37994263 37994552 -63385969 - AluSx SINE Alu -18 294 1 300 357 18 0 chr15 37994663 37994775 -63385746 - MIR SINE MIR -55 153 40 742 220 13 0 chr15 37996160 37996310 -63384211 + MER58A DNA MER1_type 5 156 0 227 229 0 0 chr15 37996310 37996357 -63384164 + MER58A DNA MER1_type 178 224 0 202 413 58 0 chr15 37996368 37996489 -63384032 - L2 LINE L2 -12 3260 3133 244 343 94 33 chr15 37996559 37996846 -63383675 - L2 LINE L2 -257 3015 2716 835 101 92 0 chr15 37996917 37997036 -63383485 + AluSx SINE Alu 1 130 -182 1390 123 0 5 chr15 37997112 37997307 -63383214 + AluSx SINE Alu 115 308 -1 365 180 11 0 chr15 37997720 37997809 -63382712 + GA-rich Low_complexity Low_complexity 1 90 0 517 316 18 53 chr15 37997836 37998175 -63382346 + L1M4 LINE L1 3798 4124 -2022 2262 82 0 7 chr15 37998196 37998538 -63381983 + AluY SINE Alu 1 311 0 206 291 12 70 chr15 37998574 37998660 -63381861 - L2 LINE L2 -655 2659 2579 2276 78 16 26 chr15 37998724 37999031 -63381490 - AluSp SINE Alu -9 304 1 261 174 0 130 chr15 38000691 38000732 -63379789 - MIR SINE MIR -30 232 208 2149 109 3 26 chr15 38000732 38001043 -63379478 - AluSx SINE Alu -8 304 1 261 174 0 130 chr15 38001043 38001093 -63379428 - MIR SINE MIR -54 208 153 1395 223 78 1 chr15 38001098 38001443 -63379078 - L1MB5 LINE L1 -1 6173 5804 36126 78 17 7 chr15 38001507 38007590 -63372931 - L1PA6 LINE L1 0 6154 11 267 203 0 0 chr15 38007601 38007665 -63372856 - L1MB5 LINE L1 -350 5824 5761 * 675 275 75 46 chr15 38007658 38009084 -63371437 - L1M4c LINE L1 -4983 1663 5 365 266 125 23 chr15 38009090 38009218 -63371303 - MIR SINE MIR -111 151 11 180 111 0 0 chr15 38009256 38009283 -63371238 + (T)n Simple_repeat Simple_repeat 1 27 0 4041 146 30 20 chr15 38009512 38010176 -63370345 + L1MC1 LINE L1 5588 6261 -72 1550 195 13 27 chr15 38010176 38010348 -63370173 - AluJb SINE Alu -12 300 132 2113 125 7 0 chr15 38010348 38010643 -63369878 - AluSp SINE Alu -16 297 1 1550 195 13 27 chr15 38010643 38010768 -63369753 - AluJb SINE Alu -180 132 7 4041 146 30 20 chr15 38010768 38010836 -63369685 + L1MC1 LINE L1 6261 6327 -6 2139 123 0 32 chr15 38010981 38011291 -63369230 - AluSx SINE Alu -12 300 1 1616 193 4 4 chr15 38011358 38011628 -63368893 - AluSx SINE Alu -18 294 25 1562 192 23 7 chr15 38011927 38012229 -63368292 - AluJb SINE Alu -5 307 1 1961 168 43 36 chr15 38012349 38012765 -63367756 + MSTB1 LTR MaLR 1 419 -13 404 279 92 9 chr15 38012810 38013050 -63367471 + L1ME LINE L1 5592 5848 -303 362 299 93 52 chr15 38013225 38013493 -63367028 + L1ME4a LINE L1 5662 5940 -181 2047 151 7 0 chr15 38013640 38013938 -63366583 - AluSq SINE Alu -13 300 1 2510 211 50 73 chr15 38014051 38014355 -63366166 + L1M4 LINE L1 16 325 -6217 1809 119 0 4 chr15 38014355 38014599 -63365922 - AluSx SINE Alu -33 279 37 2510 211 50 73 chr15 38014599 38015047 -63365474 + L1M4 LINE L1 325 751 -5791 1037 179 60 63 chr15 38015046 38015302 -63365219 + L1MB7 LINE L1 5876 6132 -52 * 1645 195 10 7 chr15 38015302 38015599 -63364922 + AluJb SINE Alu 1 298 -14 1037 179 60 63 chr15 38015599 38015644 -63364877 + L1MB7 LINE L1 6132 6176 -8 432 141 165 16 chr15 38015936 38016057 -63364464 - L1ME4a LINE L1 -9 6112 5974 25 0 0 0 chr15 38016222 38016247 -63364274 + AT_rich Low_complexity Low_complexity 1 25 0 232 211 193 0 chr15 38016747 38016804 -63363717 - MIR3 SINE MIR -28 180 113 2441 70 0 3 chr15 38016846 38017145 -63363376 - AluY SINE Alu -13 298 1 2039 90 83 0 chr15 38017650 38017928 -63362593 - AluSq SINE Alu -12 301 1 2312 137 25 23 chr15 38018360 38018674 -63361847 + L1MB4 LINE L1 5743 6060 -120 1768 191 0 10 chr15 38018674 38018972 -63361549 + AluSx SINE Alu 1 295 -17 2312 137 25 23 chr15 38018972 38019094 -63361427 + L1MB4 LINE L1 6060 6180 0 204 125 0 0 chr15 38019879 38019911 -63360610 + (TA)n Simple_repeat Simple_repeat 1 32 0 5624 108 58 27 chr15 38019911 38021361 -63359160 - L1PA13 LINE L1 -1 6162 4694 2343 102 0 0 chr15 38021445 38021740 -63358781 + AluSx SINE Alu 1 295 -17 4568 199 99 18 chr15 38021740 38023016 -63357505 + Charlie1a DNA MER1_type 76 1455 0 219 280 40 13 chr15 38023080 38023155 -63357366 + MIR3 SINE MIR 125 201 -7 1875 132 14 11 chr15 38023597 38023912 -63356609 + AluJo SINE Alu 1 316 0 2861 13 0 0 chr15 38024866 38025177 -63355344 + AluYb8 SINE Alu 1 311 -7 2200 105 3 3 chr15 38025299 38025604 -63354917 + AluSx SINE Alu 1 305 -7 1142 130 0 0 chr15 38025661 38025815 -63354706 + AluSg/x SINE Alu 135 288 -22 248 254 202 9 chr15 38026073 38026187 -63354334 + L2 LINE L2 3177 3312 -1 1580 154 84 0 chr15 38026646 38026944 -63353577 + MER7A DNA MER2_type 1 321 -25 226 174 29 29 chr15 38026991 38027060 -63353461 + (TA)n Simple_repeat Simple_repeat 1 69 0 285 292 117 8 chr15 38029038 38029158 -63351363 + L3 LINE CR1 1428 1560 -17 768 139 366 14 chr15 38029903 38030119 -63350402 + AluJo SINE Alu 1 292 -20 24 0 0 29 chr15 38030294 38030305 -63350216 + AT_rich Low_complexity Low_complexity 1 11 -23 1660 156 10 10 chr15 38030305 38030593 -63349928 + AluJb SINE Alu 3 290 -22 24 0 0 29 chr15 38030593 38030616 -63349905 + AT_rich Low_complexity Low_complexity 11 34 0 1269 263 84 23 chr15 38031936 38032460 -63348061 - L1MC4a LINE L1 -1736 6072 5517 2329 88 3 0 chr15 38032460 38032754 -63347767 + AluSp SINE Alu 1 295 -18 2295 93 0 19 chr15 38032803 38033113 -63347408 - AluSx SINE Alu -8 304 1 198 0 0 0 chr15 38033127 38033149 -63347372 + (A)n Simple_repeat Simple_repeat 1 22 0 2006 141 0 3 chr15 38033934 38034232 -63346289 + AluJb SINE Alu 12 308 -4 472 271 65 32 chr15 38034302 38034457 -63346064 - MIR SINE MIR -29 233 74 1859 147 18 3 chr15 38036613 38036899 -63343622 + AluSx SINE Alu 1 290 -22 247 315 8 16 chr15 38036904 38037031 -63343490 + L1 LINE L1 3661 3786 -2360 1017 119 0 0 chr15 38037116 38037250 -63343271 + AluSq/x SINE Alu 1 134 -178 2201 99 3 7 chr15 38037252 38037544 -63342977 + AluSg SINE Alu 1 291 -19 1741 194 19 33 chr15 38037959 38038325 -63342196 - MLT1A2 LTR MaLR -13 361 1 969 184 0 6 chr15 38039851 38040009 -63340512 - FAM SINE Alu -19 166 10 24 32 0 0 chr15 38040263 38040294 -63340227 + AT_rich Low_complexity Low_complexity 1 31 0 213 39 0 0 chr15 38040608 38040634 -63339887 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 2146 126 0 10 chr15 38040729 38041031 -63339490 + AluSx SINE Alu 6 304 -8 424 254 76 0 chr15 38042563 38042681 -63337840 - MER94 DNA DNA -4 130 4 359 43 0 0 chr15 38043146 38043193 -63337328 + MADE1 DNA Mariner 1 47 -33 728 199 0 15 chr15 38043904 38044035 -63336486 - FLAM_C SINE Alu -4 129 1 241 306 12 0 chr15 38044165 38044250 -63336271 - L1 LINE L1 -2412 3734 3649 264 273 30 15 chr15 38044360 38044426 -63336095 + LTR67 LTR ERVL 114 180 -377 413 291 35 35 chr15 38044638 38044810 -63335711 + LTR67 LTR ERVL 384 555 -2 2505 151 5 10 chr15 38044938 38045328 -63335193 + MLT1B LTR MaLR 1 388 -2 1752 197 0 0 chr15 38045737 38046031 -63334490 + AluJo SINE Alu 1 294 -18 979 339 66 40 chr15 38046159 38047081 -63333440 + ERVL LTR ERVL 788 1696 -3958 591 317 76 35 chr15 38047109 38047478 -63333043 + ERVL LTR ERVL 1796 2179 -3585 611 309 45 45 chr15 38047565 38047808 -63332713 - MIR SINE MIR -1 261 19 271 223 117 11 chr15 38048772 38048866 -63331655 - L1ME4a LINE L1 -4 6117 6014 1817 154 20 10 chr15 38048983 38049281 -63331240 + AluJb SINE Alu 1 301 -11 2343 106 0 3 chr15 38049503 38049805 -63330716 + AluSx SINE Alu 1 301 -11 883 251 103 45 chr15 38049864 38050184 -63330337 - L1MC4a LINE L1 -458 5696 5601 2307 86 3 13 chr15 38050184 38050485 -63330036 - AluY SINE Alu -13 298 1 883 251 103 45 chr15 38050485 38050549 -63329972 - L1MC4a LINE L1 -553 5601 5542 22 0 0 0 chr15 38050557 38050579 -63329942 + AT_rich Low_complexity Low_complexity 1 22 0 377 299 134 31 chr15 38050579 38050840 -63329681 + L1MC/D LINE L1 4914 5201 -945 441 0 0 0 chr15 38050851 38050900 -63329621 + (CA)n Simple_repeat Simple_repeat 2 50 0 559 152 0 30 chr15 38050905 38051004 -63329517 + L1MCa LINE L1 4 99 -6327 631 217 5 63 chr15 38051004 38051071 -63329450 - L1M4 LINE L1 -3649 2497 2428 2023 143 7 7 chr15 38051071 38051372 -63329149 + AluSq SINE Alu 1 301 -12 631 217 5 63 chr15 38051372 38051525 -63328996 - L1M4 LINE L1 -3718 2428 2290 207 100 0 0 chr15 38051574 38051604 -63328917 + (GTTTG)n Simple_repeat Simple_repeat 2 31 0 2186 100 0 21 chr15 38051611 38051902 -63328619 - AluSq SINE Alu -26 287 3 235 168 0 0 chr15 38052057 38052105 -63328416 - Alu SINE Alu 0 133 91 293 309 57 26 chr15 38052105 38052299 -63328222 + L1MC/D LINE L1 5372 5571 -2237 21 57 0 0 chr15 38052412 38052447 -63328074 + AT_rich Low_complexity Low_complexity 1 35 0 868 183 0 0 chr15 38052541 38052672 -63327849 - FLAM_A SINE Alu -1 132 2 357 24 0 0 chr15 38053032 38053074 -63327447 + (TTCA)n Simple_repeat Simple_repeat 4 45 0 636 348 19 75 chr15 38053077 38053545 -63326976 - L2 LINE L2 -12 3260 2819 347 292 35 9 chr15 38053575 38053688 -63326833 - L2 LINE L2 -5 3308 3193 237 346 19 9 chr15 38053713 38053820 -63326701 - L2 LINE L2 -541 2773 2666 6099 99 8 3 chr15 38053876 38054736 -63325785 - L1PA8A LINE L1 -1594 4552 3689 5511 87 17 5 chr15 38054735 38055949 -63324572 + L1PA8A LINE L1 4559 5781 -350 * 2257 119 6 0 chr15 38055949 38056260 -63324261 + AluSp SINE Alu 1 313 0 15525 140 12 106 chr15 38056279 38059602 -63320919 + L1PA7 LINE L1 12 3023 -3123 6846 72 21 1 chr15 38059587 38061237 -63319284 + L1PA7 LINE L1 4402 6075 -79 * 1356 97 0 0 chr15 38061241 38061416 -63319105 - AluSg/x SINE Alu -16 296 122 718 91 0 66 chr15 38061416 38061537 -63318984 + L1MB4 LINE L1 6068 6180 0 1019 173 0 0 chr15 38062540 38062708 -63317813 - FRAM SINE Alu -8 168 1 2170 114 0 10 chr15 38063698 38063995 -63316526 - AluSg SINE Alu -16 294 1 2261 91 0 7 chr15 38064533 38064829 -63315692 - AluSc SINE Alu -15 294 1 1989 146 3 3 chr15 38064947 38065242 -63315279 + AluSx SINE Alu 1 295 -17 26 0 0 0 chr15 38065433 38065459 -63315062 + AT_rich Low_complexity Low_complexity 1 26 0 3809 217 42 82 chr15 38066417 38066670 -63313851 + L1 LINE L1 4046 4307 -1839 2446 121 131 8 chr15 38066670 38067051 -63313470 - MSTA LTR MaLR 0 428 1 3809 217 42 82 chr15 38067051 38067465 -63313056 + L1 LINE L1 4307 4736 -1410 2098 121 72 32 chr15 38067465 38067813 -63312708 + THE1B LTR MaLR 3 364 0 3809 217 42 82 chr15 38067813 38067870 -63312651 + L1 LINE L1 4736 4794 -1352 2148 100 17 17 chr15 38067870 38068171 -63312350 + AluSx SINE Alu 3 303 -9 3809 217 42 82 chr15 38068171 38068755 -63311766 + L1 LINE L1 4794 5304 -842 412 254 18 130 chr15 38068997 38069166 -63311355 + FRAM SINE Alu 1 150 -26 186 43 0 0 chr15 38069166 38069189 -63311332 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1999 151 27 18 chr15 38070451 38070828 -63309693 + L1MB4 LINE L1 5247 5626 -548 2180 166 41 9 chr15 38070828 38071272 -63309249 + MLT2D LTR ERVL 1 455 -9 2849 167 51 13 chr15 38071299 38071398 -63309123 + L1MB4 LINE L1 5621 5715 -465 4118 183 48 45 chr15 38071398 38072349 -63308172 - LTR13 LTR ERVK 0 954 1 2849 167 51 13 chr15 38072349 38072783 -63307738 + L1MB4 LINE L1 5715 6174 -6 398 121 72 60 chr15 38072802 38072885 -63307636 + L1MB8 LINE L1 6093 6176 -2 235 259 69 0 chr15 38072891 38072949 -63307572 - MLT1F1 LTR MaLR -428 139 78 390 157 248 8 chr15 38073123 38073244 -63307277 - HAL1 LINE L1 -220 2287 2138 1418 234 172 65 chr15 38073245 38073800 -63306721 - HAL1 LINE L1 -554 1953 1272 1712 171 3 23 chr15 38073800 38074104 -63306417 - AluJo SINE Alu -14 298 1 1418 234 172 65 chr15 38074104 38074410 -63306111 - HAL1 LINE L1 -1235 1272 1000 1429 177 7 56 chr15 38074555 38074843 -63305678 - AluJo SINE Alu -11 301 28 1156 101 70 159 chr15 38074937 38075113 -63305408 - MER46A DNA MER2_type -2495 236 89 2135 118 7 0 chr15 38075113 38075402 -63305119 + AluSx SINE Alu 1 291 -21 1156 101 70 159 chr15 38075402 38075483 -63305038 - MER46A DNA MER2_type -2642 89 2 2185 109 0 0 chr15 38075673 38075956 -63304565 - AluSx SINE Alu -26 286 4 452 276 52 11 chr15 38076096 38076270 -63304251 - HAL1 LINE L1 -2298 209 29 516 362 77 50 chr15 38076363 38076948 -63303573 + L2 LINE L2 2672 3270 -2 1847 226 26 19 chr15 38077478 38077894 -63302627 - LTR52 LTR ERVL -2 419 1 509 326 78 12 chr15 38078239 38078481 -63302040 - MIR SINE MIR -3 259 2 2049 150 0 6 chr15 38078701 38079014 -63301507 - AluSx SINE Alu -1 311 1 5438 149 11 27 chr15 38079224 38080189 -63300332 + L1MB2 LINE L1 5226 6170 -1 2384 83 0 29 chr15 38080193 38080506 -63300015 + AluSx SINE Alu 1 304 -8 1928 170 0 3 chr15 38080957 38081269 -63299252 - AluJb SINE Alu -1 311 1 207 0 0 0 chr15 38081354 38081377 -63299144 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr15 38082936 38082958 -63297563 + AT_rich Low_complexity Low_complexity 1 22 0 871 282 15 23 chr15 38083145 38083404 -63297117 - MIR SINE MIR -1 261 5 797 197 21 0 chr15 38083477 38083619 -63296902 + MER58B DNA MER1_type 197 341 0 389 291 185 43 chr15 38083704 38084006 -63296515 + L3 LINE CR1 1216 1560 -17 500 249 19 78 chr15 38084269 38084474 -63296047 - L2 LINE L2 0 3313 3121 321 305 117 13 chr15 38085416 38085570 -63294951 + MIR SINE MIR 93 262 0 2000 138 0 40 chr15 38085985 38086310 -63294211 - AluJb SINE Alu 0 312 1 297 268 89 38 chr15 38086860 38087017 -63293504 + L1ME4a LINE L1 5676 5840 -281 951 213 49 8 chr15 38087134 38087378 -63293143 - L1MA4 LINE L1 -5 6295 6042 248 124 180 11 chr15 38087459 38087548 -63292973 + L1ME4a LINE L1 6018 6121 0 23 0 0 53 chr15 38087928 38087943 -63292578 + AT_rich Low_complexity Low_complexity 1 15 -21 2170 92 7 20 chr15 38087943 38088236 -63292285 + AluSq SINE Alu 1 289 -24 23 0 0 53 chr15 38088236 38088258 -63292263 + AT_rich Low_complexity Low_complexity 15 36 0 1955 143 7 3 chr15 38088266 38088553 -63291968 + AluSx SINE Alu 9 296 -16 787 315 8 0 chr15 38088762 38089003 -63291518 + MIR SINE MIR 20 262 0 2021 197 18 59 chr15 38089103 38089377 -63291144 + L1M4 LINE L1 4787 5028 -1118 2207 125 0 0 chr15 38089377 38089673 -63290848 - AluSx SINE Alu -16 296 1 2021 197 18 59 chr15 38089673 38089961 -63290560 + L1M4 LINE L1 5028 5326 -820 * 11744 147 27 38 chr15 38089949 38092931 -63287590 + L1PA14 LINE L1 3193 6143 -18 257 184 0 0 chr15 38092941 38092990 -63287531 + L1M LINE L1 5320 5368 -936 2021 131 3 10 chr15 38092992 38093289 -63287232 + AluSx SINE Alu 1 295 -17 477 0 0 0 chr15 38094518 38094571 -63285950 + (CA)n Simple_repeat Simple_repeat 2 54 0 244 126 0 0 chr15 38095544 38095584 -63284937 + Alu SINE Alu 1 34 -266 956 97 0 8 chr15 38095686 38095810 -63284711 - AluSg1 SINE Alu -186 123 1 2023 145 3 3 chr15 38096314 38096610 -63283911 - AluSx SINE Alu -16 296 1 565 298 40 13 chr15 38096808 38096959 -63283562 + L2 LINE L2 3116 3270 -2 1682 181 10 29 chr15 38097048 38097362 -63283159 + AluJo SINE Alu 1 308 -4 1571 205 142 21 chr15 38098892 38099322 -63281199 - MLT1D LTR MaLR -4 501 20 467 294 0 8 chr15 38100162 38100281 -63280240 + L2 LINE L2 3151 3268 -4 22 35 0 0 chr15 38100368 38100397 -63280124 + AT_rich Low_complexity Low_complexity 1 29 0 1445 211 21 40 chr15 38100621 38100995 -63279526 - MLT1A2 LTR MaLR -4 370 4 1054 158 29 49 chr15 38101037 38101283 -63279238 + L1MB8 LINE L1 5935 6175 -3 450 279 44 7 chr15 38101719 38101855 -63278666 - MIR3 SINE MIR -21 187 47 22 35 0 0 chr15 38102762 38102791 -63277730 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr15 38103692 38103718 -63276803 + AT_rich Low_complexity Low_complexity 1 26 0 2418 98 0 16 chr15 38104378 38104694 -63275827 - AluSx SINE Alu 0 312 2 2518 69 3 0 chr15 38104770 38105073 -63275448 - AluSp SINE Alu -5 308 5 2428 79 0 10 chr15 38105299 38105602 -63274919 - AluSq SINE Alu -12 301 2 2009 138 0 0 chr15 38105612 38105917 -63274604 - AluSx SINE Alu 0 307 3 1441 134 4 13 chr15 38107639 38107871 -63272650 + MER96B DNA MER1_type? 1 230 -187 34 0 0 0 chr15 38109236 38109270 -63271251 + AT_rich Low_complexity Low_complexity 1 34 0 735 164 0 0 chr15 38109273 38109383 -63271138 - FLAM_C SINE Alu -32 111 2 2043 119 0 0 chr15 38109945 38110222 -63270299 - AluSx SINE Alu -2 310 34 329 244 23 12 chr15 38110383 38110469 -63270052 + MIR SINE MIR 35 121 -87 2177 110 3 3 chr15 38110496 38110788 -63269733 + AluSx SINE Alu 3 294 -18 1561 204 16 3 chr15 38110926 38111240 -63269281 + L1MD3 LINE L1 7398 7715 -280 320 116 29 14 chr15 38111247 38111316 -63269205 + L1MD3 LINE L1 7924 7993 -2 525 302 35 30 chr15 38112427 38112659 -63267862 - MIR SINE MIR -2 260 28 673 166 150 32 chr15 38113158 38113345 -63267176 + MER6B DNA MER2_type 1 209 -1 2167 115 0 3 chr15 38113359 38113655 -63266866 - AluSx SINE Alu -16 296 2 187 319 118 52 chr15 38115385 38115520 -63265001 - MIR3 SINE MIR -12 196 53 412 229 18 9 chr15 38115636 38115745 -63264776 - L2 LINE L2 -5 3308 3199 1681 159 3 24 chr15 38115931 38116243 -63264278 + AluJb SINE Alu 1 306 0 888 134 0 28 chr15 38116879 38117021 -63263500 + FLAM_C SINE Alu 1 138 -5 324 322 68 0 chr15 38117378 38117496 -63263025 - MIR3 SINE MIR 0 208 83 961 247 31 0 chr15 38118437 38118664 -63261857 - MIR SINE MIR -1 261 28 692 264 47 35 chr15 38118896 38119150 -63261371 + MIR SINE MIR 6 262 0 294 178 0 0 chr15 38120767 38120812 -63259709 - HsTC2 DNA Tc2 -612 1286 1242 258 307 0 0 chr15 38120810 38120885 -63259636 - HsTC2 DNA Tc2 -1780 118 44 * 2121 132 7 0 chr15 38121569 38121879 -63258642 - AluSx SINE Alu 0 312 1 309 346 56 26 chr15 38122333 38122567 -63257954 - L3b LINE CR1 -84 1499 1259 671 141 8 41 chr15 38122567 38122688 -63257833 - FLAM_A SINE Alu -6 136 20 3088 184 58 39 chr15 38122814 38123454 -63257067 - MER82 DNA MER2_type 0 653 2 1960 153 7 19 chr15 38123517 38123687 -63256834 + AluJb SINE Alu 1 167 -145 3190 56 99 7 chr15 38123687 38124132 -63256389 - LTR19A LTR ERV1 0 486 1 1960 153 7 19 chr15 38124132 38124269 -63256252 + AluJb SINE Alu 167 304 -8 846 219 32 14 chr15 38124296 38124515 -63256006 - L1MC4 LINE L1 -1013 7029 6807 2375 102 0 3 chr15 38124606 38124920 -63255601 - AluSq SINE Alu 0 313 1 604 225 14 7 chr15 38125042 38125180 -63255341 + MIR SINE MIR 43 181 -81 288 310 108 13 chr15 38125471 38125629 -63254892 + MIR SINE MIR 9 181 -81 637 242 39 22 chr15 38125751 38125929 -63254592 + MIR SINE MIR 21 201 -61 522 231 40 67 chr15 38126274 38126528 -63253993 - L1M LINE L1 -747 5423 5175 2243 109 0 25 chr15 38126530 38126850 -63253671 + AluSx SINE Alu 1 312 0 411 228 132 9 chr15 38126857 38127011 -63253510 - L1MCa LINE L1 -1537 4889 4718 882 146 0 0 chr15 38127012 38127142 -63253379 - AluSp/q SINE Alu -17 296 167 317 137 20 0 chr15 38127852 38127903 -63252618 - Alu SINE Alu -250 52 1 2261 98 0 0 chr15 38128018 38128305 -63252216 + AluSx SINE Alu 9 295 -17 2106 125 0 14 chr15 38128351 38128662 -63251859 + AluSx SINE Alu 1 307 0 491 249 85 28 chr15 38128664 38128841 -63251680 - MER5A DNA MER1_type 0 189 3 1599 158 32 45 chr15 38130239 38130431 -63250090 - AluJo SINE Alu -6 306 118 450 0 0 0 chr15 38130431 38130481 -63250040 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 1599 158 32 45 chr15 38130481 38130598 -63249923 - AluJo SINE Alu -194 118 1 381 216 62 21 chr15 38130999 38131096 -63249425 + Charlie7 DNA MER1_type 1 101 -2511 4814 138 102 111 chr15 38131098 38131678 -63248843 - L1MC3 LINE L1 -7 7778 7194 283 253 24 24 chr15 38131678 38131761 -63248760 - MLT1F1 LTR MaLR -443 124 42 4814 138 102 111 chr15 38131761 38132342 -63248179 - L1MC3 LINE L1 -591 7194 6546 7760 227 34 29 chr15 38132369 38133456 -63247065 - L1MCa LINE L1 -1751 4675 3595 2194 185 74 15 chr15 38133456 38133931 -63246590 - LTR22 LTR ERVK -4 505 3 7760 227 34 29 chr15 38133931 38134477 -63246044 - L1MCa LINE L1 -2831 3595 3053 2260 107 3 0 chr15 38134477 38134767 -63245754 + AluSg SINE Alu 2 292 -18 7760 227 34 29 chr15 38134767 38135279 -63245242 - L1MCa LINE L1 -3373 3053 2555 1951 125 60 0 chr15 38135279 38135560 -63244961 + AluSq SINE Alu 1 298 -15 7760 227 34 29 chr15 38135560 38135796 -63244725 - L1MCa LINE L1 -3871 2555 2322 1208 142 0 16 chr15 38135813 38136003 -63244518 - AluJ SINE Alu -1 311 125 399 211 0 0 chr15 38136004 38136094 -63244427 + (TATG)n Simple_repeat Simple_repeat 1 90 0 216 0 0 0 chr15 38136173 38136197 -63244324 + (TA)n Simple_repeat Simple_repeat 2 25 0 907 150 0 0 chr15 38136202 38136335 -63244186 - AluJ SINE Alu -169 133 1 1101 207 48 30 chr15 38136335 38136794 -63243727 - L1MCa LINE L1 -4275 2332 1769 2274 106 3 0 chr15 38136989 38137282 -63243239 - AluSg SINE Alu -16 294 1 892 259 42 63 chr15 38137358 38137783 -63242738 - HAL1b LINE L1 -709 639 224 2092 160 0 0 chr15 38137805 38138111 -63242410 - AluJb SINE Alu -4 308 3 461 248 139 84 chr15 38138281 38138519 -63242002 - L1MC4a LINE L1 -1571 6237 5987 1939 106 12 84 chr15 38138751 38139071 -63241450 + AluSx SINE Alu 1 297 -15 200 29 0 59 chr15 38139090 38139124 -63241397 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1570 84 31 0 chr15 38139126 38139317 -63241204 - AluSq SINE Alu -116 197 1 581 189 27 9 chr15 38139406 38139517 -63241004 + MIR SINE MIR 59 171 -91 2326 87 0 0 chr15 38139576 38139862 -63240659 + AluSc SINE Alu 1 286 -23 192 77 0 0 chr15 38139862 38139888 -63240633 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 195 207 180 72 chr15 38140603 38140714 -63239807 + L3b LINE CR1 1109 1231 -352 303 28 0 0 chr15 38140976 38141012 -63239509 + (GA)n Simple_repeat Simple_repeat 2 37 0 201 222 67 0 chr15 38141195 38141240 -63239281 + L3b LINE CR1 1298 1345 -238 242 296 70 0 chr15 38141293 38141364 -63239157 + L3b LINE CR1 1282 1357 -226 289 260 48 2 chr15 38142794 38142891 -63237630 + MER5B DNA MER1_type 1 99 -90 244 347 65 16 chr15 38142918 38143042 -63237479 - L2 LINE L2 -15 3257 3128 1903 146 0 17 chr15 38143751 38144046 -63236475 - AluJb SINE Alu -17 295 6 376 235 80 53 chr15 38144095 38144264 -63236257 + MIR SINE MIR 16 187 -58 240 316 22 15 chr15 38145226 38145362 -63235159 + CT-rich Low_complexity Low_complexity 1 137 0 302 140 18 0 chr15 38145861 38145918 -63234603 - L2 LINE L2 0 3313 3256 1008 251 70 48 chr15 38146006 38146219 -63234302 - L1ME4a LINE L1 -18 6103 5896 2153 129 0 19 chr15 38146219 38146537 -63233984 - AluSx SINE Alu 0 312 1 1008 251 70 48 chr15 38146537 38146806 -63233715 - L1ME4a LINE L1 -225 5896 5610 2593 70 0 3 chr15 38147326 38147639 -63232882 + AluSx SINE Alu 1 312 0 1294 187 111 16 chr15 38148507 38148822 -63231699 + MER2 DNA MER2_type 1 345 0 2487 87 0 3 chr15 38149028 38149337 -63231184 - AluSg SINE Alu -2 308 1 289 289 10 39 chr15 38150080 38150184 -63230337 + MIR SINE MIR 92 192 -70 345 256 13 0 chr15 38150573 38150651 -63229870 - L2 LINE L2 -2 3311 3233 405 272 59 94 chr15 38150760 38151014 -63229507 - L2 LINE L2 -19 3253 3009 589 312 50 10 chr15 38151483 38151685 -63228836 - MIR SINE MIR -25 237 28 2401 79 3 0 chr15 38151686 38151977 -63228544 - AluSg SINE Alu -11 299 8 1557 107 4 22 chr15 38152565 38152790 -63227731 + AluSc SINE Alu 76 296 -13 22 35 0 0 chr15 38152829 38152858 -63227663 + AT_rich Low_complexity Low_complexity 1 29 0 624 122 11 0 chr15 38152864 38152954 -63227567 - FLAM_C SINE Alu -25 118 28 1367 144 10 0 chr15 38152958 38153160 -63227361 + AluJo SINE Alu 88 291 -21 249 162 0 0 chr15 38153160 38153197 -63227324 - Alu SINE Alu -266 37 1 242 163 0 100 chr15 38153197 38153277 -63227244 - L1MA4 LINE L1 0 6300 6229 * 968 120 10 1 chr15 38153257 38153431 -63227090 - L1MA4 LINE L1 -7 6296 6116 2218 115 3 0 chr15 38153433 38153720 -63226801 + AluSx SINE Alu 1 288 -24 560 110 0 11 chr15 38153721 38153812 -63226709 + (CA)n Simple_repeat Simple_repeat 2 91 0 1140 138 11 77 chr15 38153854 38153912 -63226609 - L1MA4 LINE L1 -179 6121 6061 2307 120 0 0 chr15 38153912 38154212 -63226309 - AluSx SINE Alu -8 304 5 1140 138 11 77 chr15 38154212 38154413 -63226108 - L1MA4 LINE L1 -239 6061 5879 2300 139 11 0 chr15 38154992 38155351 -63225170 - MER47A DNA MER2_type 0 366 4 285 385 8 0 chr15 38155370 38155487 -63225034 - L2 LINE L2 -658 2656 2539 822 152 4 2 chr15 38155584 38155844 -63224677 + AluJb SINE Alu 4 309 -3 237 217 72 24 chr15 38155890 38155973 -63224548 - L2 LINE L2 -943 2371 2285 2323 102 0 0 chr15 38156043 38156337 -63224184 + AluSx SINE Alu 1 294 -18 278 336 35 35 chr15 38156339 38156565 -63223956 - L2 LINE L2 -1049 2265 2040 950 204 33 41 chr15 38158337 38158607 -63221914 - L2 LINE L2 0 3313 3046 558 261 121 19 chr15 38159324 38159532 -63220989 + MIR SINE MIR 15 244 -18 476 339 17 7 chr15 38159573 38159772 -63220749 - MIR SINE MIR -56 206 5 2248 101 0 3 chr15 38160489 38160809 -63219712 - AluSq SINE Alu 0 319 1 431 300 69 19 chr15 38160999 38161159 -63219362 - MIR SINE MIR -82 180 13 359 257 95 20 chr15 38161711 38161810 -63218711 - MIR SINE MIR -56 206 91 2251 98 7 3 chr15 38161810 38162105 -63218416 - AluY SINE Alu -15 296 1 359 257 95 20 chr15 38162105 38162153 -63218368 - MIR SINE MIR -171 91 48 213 266 97 0 chr15 38162491 38162559 -63217962 - MIR SINE MIR -95 113 47 2289 124 0 0 chr15 38169599 38169898 -63210623 - AluSq SINE Alu -14 299 1 2374 65 24 0 chr15 38170216 38170508 -63210013 - AluSx SINE Alu -13 299 1 1306 196 3 81 chr15 38172834 38173156 -63207365 - AluSq SINE Alu -12 301 5 1717 150 0 68 chr15 38173424 38173546 -63206975 + AluJb SINE Alu 22 151 -161 2138 114 34 0 chr15 38173546 38173844 -63206677 + AluSx SINE Alu 1 308 -4 1717 150 0 68 chr15 38173844 38174028 -63206493 + AluJb SINE Alu 151 307 -5 2431 86 0 0 chr15 38174129 38174433 -63206088 + AluSg SINE Alu 1 304 -6 1311 214 19 0 chr15 38174557 38174819 -63205702 + Tigger7 DNA MER2_type 1 267 -2220 382 252 19 28 chr15 38176786 38176893 -63203628 + MER5A DNA MER1_type 2 107 -82 2014 157 0 10 chr15 38177545 38177858 -63202663 + AluJb SINE Alu 1 310 -2 1388 184 29 36 chr15 38177860 38178138 -63202383 - AluJo SINE Alu -36 276 1 1788 176 23 3 chr15 38178939 38179240 -63201281 - AluJb SINE Alu -5 307 1 2158 89 43 0 chr15 38179969 38180250 -63200271 - AluSx SINE Alu -19 293 1 1750 167 0 14 chr15 38180878 38181160 -63199361 - AluJo SINE Alu -30 282 5 210 305 152 14 chr15 38181555 38181765 -63198756 + L2 LINE L2 2489 2727 -587 227 250 0 0 chr15 38181845 38181893 -63198628 + L2 LINE L2 3225 3272 0 829 94 0 0 chr15 38182052 38182158 -63198363 - U6 snRNA snRNA -1 106 1 289 333 78 35 chr15 38183068 38183209 -63197312 + MER5A DNA MER1_type 43 189 0 2247 57 43 7 chr15 38183233 38183513 -63197008 - AluY SINE Alu -21 290 1 1255 149 6 0 chr15 38183620 38183801 -63196720 + AluSc SINE Alu 1 182 -127 1189 253 33 14 chr15 38184894 38185257 -63195264 + L1ME3 LINE L1 5793 6162 0 307 185 93 139 chr15 38185336 38185487 -63195034 - L1MC/D LINE L1 -2330 5547 5404 1791 164 3 24 chr15 38185503 38185801 -63194720 - AluJb SINE Alu -20 292 1 590 192 64 24 chr15 38185935 38186060 -63194461 - AluJb SINE Alu -181 131 2 1602 201 96 11 chr15 38186061 38186499 -63194022 - L1MC/D LINE L1 -3057 3158 2684 1298 128 0 16 chr15 38186506 38186693 -63193828 - AluSx SINE Alu -9 301 118 1043 113 7 13 chr15 38186742 38186892 -63193629 - AluSq/x SINE Alu -163 149 1 694 104 10 0 chr15 38186897 38186993 -63193528 - AluSx SINE Alu -180 133 37 548 86 0 0 chr15 38187100 38187170 -63193351 - AluS SINE Alu -242 71 2 1714 210 49 62 chr15 38187171 38187413 -63193108 - L1MEc LINE L1 -3524 2691 2447 1682 194 13 10 chr15 38187413 38187712 -63192809 - AluJo SINE Alu -12 300 1 1714 210 49 62 chr15 38187712 38187850 -63192671 - L1MEc LINE L1 -3768 2447 2309 1636 185 0 40 chr15 38187850 38188152 -63192369 + AluJo SINE Alu 3 292 -20 1714 210 49 62 chr15 38188152 38188356 -63192165 - L1MEc LINE L1 -3906 2309 2104 2648 49 0 0 chr15 38188356 38188662 -63191859 - AluY SINE Alu -5 306 1 1714 210 49 62 chr15 38188662 38188730 -63191791 - L1MEc LINE L1 -4111 2104 2090 1932 104 4 0 chr15 38188730 38188981 -63191540 - AluSg SINE Alu -1 309 58 1714 210 49 62 chr15 38188981 38189015 -63191506 - L1MEc LINE L1 -4125 2090 2057 444 187 0 0 chr15 38189015 38189090 -63191431 + MER5A DNA MER1_type 1 75 -114 1580 175 7 25 chr15 38189089 38189369 -63191152 - AluJo SINE Alu -1 311 37 289 143 0 0 chr15 38189480 38189529 -63190992 + FAM SINE Alu 127 175 0 446 173 12 0 chr15 38189546 38189627 -63190894 + MER5A DNA MER1_type 108 189 0 316 300 105 5 chr15 38189628 38189838 -63190683 - L1MEc LINE L1 -4332 2064 1834 2368 96 3 3 chr15 38189951 38190264 -63190257 - AluSp SINE Alu 0 313 1 360 235 15 0 chr15 38190800 38190868 -63189653 + L2 LINE L2 3233 3301 -12 2432 74 7 0 chr15 38191145 38191443 -63189078 - AluY SINE Alu -11 300 1 378 329 68 59 chr15 38192167 38192404 -63188117 + MLT1L LTR MaLR 368 606 -9 2178 110 17 3 chr15 38192815 38193116 -63187405 + AluSx SINE Alu 1 305 -7 2008 125 0 14 chr15 38193295 38193583 -63186938 + AluSx SINE Alu 1 284 -28 357 271 92 46 chr15 38195431 38195715 -63184806 + L1ME4a LINE L1 5598 5894 -227 447 77 0 0 chr15 38195804 38195869 -63184652 + L1MA3 LINE L1 6241 6305 0 2206 114 0 3 chr15 38195891 38196189 -63184332 + AluSq SINE Alu 1 297 -16 450 0 0 0 chr15 38196189 38196239 -63184282 + (TA)n Simple_repeat Simple_repeat 2 51 0 1785 153 0 27 chr15 38196249 38196543 -63183978 + AluJb SINE Alu 7 292 -20 1313 157 20 137 chr15 38197802 38197985 -63182536 - AluYb8 SINE Alu -7 311 187 1747 68 0 0 chr15 38197985 38198190 -63182331 - AluSg/x SINE Alu -23 287 83 1313 157 20 137 chr15 38198190 38198357 -63182164 - AluYb8 SINE Alu -131 187 2 307 333 11 11 chr15 38198380 38198467 -63182054 - MIR SINE MIR -102 106 20 721 213 0 0 chr15 38198541 38198663 -63181858 + FLAM_C SINE Alu 2 123 -20 51 65 0 0 chr15 38198665 38198758 -63181763 + AT_rich Low_complexity Low_complexity 1 93 0 1139 152 0 0 chr15 38198772 38198937 -63181584 + AluJb SINE Alu 135 299 -13 2159 108 6 22 chr15 38199015 38199329 -63181192 + AluSx SINE Alu 1 309 -3 3259 139 44 2 chr15 38199494 38199969 -63180552 + LTR42 LTR ERVL 1 495 0 494 307 51 31 chr15 38200737 38200994 -63179527 + L2 LINE L2 2251 2512 -802 1310 178 23 5 chr15 38201489 38201708 -63178813 + AluJo SINE Alu 1 223 -89 727 212 0 0 chr15 38202424 38202542 -63177979 + FLAM_A SINE Alu 1 118 -15 40 0 0 0 chr15 38202542 38202582 -63177939 + AT_rich Low_complexity Low_complexity 1 40 0 240 319 121 0 chr15 38203963 38204054 -63176467 - L2 LINE L2 -37 3235 3134 27 49 0 0 chr15 38207227 38207268 -63173253 + AT_rich Low_complexity Low_complexity 1 41 0 2084 135 7 0 chr15 38207325 38207622 -63172899 + AluSx SINE Alu 1 299 -13 2317 93 0 26 chr15 38207766 38208077 -63172444 - AluSx SINE Alu -9 303 1 821 265 36 56 chr15 38208584 38208680 -63171841 - MIR SINE MIR -5 257 161 2375 64 0 0 chr15 38208680 38208960 -63171561 - AluSg SINE Alu -13 297 18 821 265 36 56 chr15 38208960 38209112 -63171409 - MIR SINE MIR -101 161 14 1847 142 0 48 chr15 38209687 38209997 -63170524 + AluJb SINE Alu 3 297 -15 1703 136 159 7 chr15 38210268 38210577 -63169944 - MER46B DNA MER2_type -4 232 2 291 244 154 57 chr15 38210643 38210766 -63169755 - AluJo SINE Alu -166 136 2 2109 128 0 23 chr15 38211450 38211754 -63168767 + AluSx SINE Alu 1 297 -15 213 233 0 0 chr15 38212095 38212138 -63168383 + CT-rich Low_complexity Low_complexity 2 44 0 2244 111 0 7 chr15 38213509 38213815 -63166706 + AluSg SINE Alu 1 304 -6 2407 97 0 0 chr15 38214277 38214587 -63165934 + AluSx SINE Alu 1 310 -2 2365 86 0 13 chr15 38214842 38215146 -63165375 + AluSg SINE Alu 1 300 -10 2401 67 3 0 chr15 38215676 38215960 -63164561 + AluSp SINE Alu 15 299 -14 2126 92 3 3 chr15 38217399 38217718 -63162803 + AluSq SINE Alu 1 319 0 1775 116 20 53 chr15 38217880 38218181 -63162340 - AluJo SINE Alu -21 291 1 617 217 8 16 chr15 38218498 38218627 -63161894 + FLAM_A SINE Alu 1 128 -5 1094 126 5 73 chr15 38218686 38218892 -63161629 + AluJo SINE Alu 97 288 -24 2386 93 0 0 chr15 38219143 38219443 -63161078 + AluSg SINE Alu 1 300 -10 1685 155 6 59 chr15 38219606 38219815 -63160706 - AluJb SINE Alu -6 306 118 2605 124 22 0 chr15 38219815 38220171 -63160350 + THE1B LTR MaLR 1 364 0 1685 155 6 59 chr15 38220171 38220284 -63160237 - AluJb SINE Alu -194 118 1 1715 174 10 10 chr15 38220366 38220660 -63159861 - AluJo SINE Alu -18 294 1 264 175 88 0 chr15 38221623 38221680 -63158841 + L2 LINE L2 3248 3309 -4 2393 90 0 0 chr15 38221936 38222236 -63158285 + AluSc SINE Alu 1 300 -9 306 286 13 0 chr15 38222503 38222580 -63157941 - L2 LINE L2 -2 3311 3234 2038 96 16 68 chr15 38222593 38222916 -63157605 + AluSq SINE Alu 1 306 -7 302 224 24 35 chr15 38222941 38223026 -63157495 - MIR SINE MIR -178 84 1 2294 97 0 7 chr15 38223152 38223461 -63157060 - AluSx SINE Alu -5 307 1 2432 80 3 0 chr15 38223546 38223848 -63156673 + AluSg SINE Alu 1 303 -7 2268 87 7 0 chr15 38223992 38224279 -63156242 + AluSq SINE Alu 5 293 -20 1473 191 29 35 chr15 38224639 38224986 -63155535 + AluJb SINE Alu 1 345 0 345 171 17 16 chr15 38225166 38225240 -63155281 + FLAM_A SINE Alu 61 117 -16 1860 157 0 7 chr15 38226531 38226824 -63153697 + AluSx SINE Alu 1 291 -21 860 250 113 98 chr15 38227463 38227813 -63152708 + L2 LINE L2 2337 2680 -633 2110 109 14 0 chr15 38227813 38228107 -63152414 + AluSg SINE Alu 1 298 -12 860 250 113 98 chr15 38228107 38228129 -63152392 + L2 LINE L2 2680 2700 -613 1411 159 17 29 chr15 38228129 38228368 -63152153 + MER46A DNA MER2_type 1 236 0 860 250 113 98 chr15 38228368 38228788 -63151733 + L2 LINE L2 2700 3132 -181 1230 235 125 37 chr15 38228788 38229312 -63151209 + MLT1G1 LTR MaLR 1 555 0 495 258 68 37 chr15 38229319 38229482 -63151039 + L2 LINE L2 3136 3303 -10 1425 198 37 4 chr15 38229560 38229828 -63150693 + AluJo SINE Alu 1 277 -35 207 0 0 0 chr15 38229834 38229857 -63150664 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2254 95 37 0 chr15 38230254 38230549 -63149972 + AluSx SINE Alu 1 306 -6 252 192 211 0 chr15 38230799 38230851 -63149670 - L2 LINE L2 -5 3308 3246 774 101 37 0 chr15 38231575 38231684 -63148837 - AluSq/x SINE Alu -199 113 1 975 147 49 38 chr15 38231732 38231916 -63148605 - Tigger2a DNA MER2_type -248 186 1 1467 163 32 4 chr15 38231916 38232162 -63148359 + Tigger2a DNA MER2_type 192 444 0 801 225 108 13 chr15 38232164 38232441 -63148080 - L1M4 LINE L1 -2886 3260 2984 576 128 51 17 chr15 38232441 38232558 -63147963 - L1MC3 LINE L1 0 7719 2849 591 207 107 8 chr15 38232567 38232688 -63147833 + AluJo SINE Alu 10 142 -170 2251 116 0 3 chr15 38232693 38233004 -63147517 + AluSq SINE Alu 4 313 0 379 94 0 0 chr15 38233005 38233058 -63147463 - L1MC3 LINE L1 -113 7672 7620 560 91 0 39 chr15 38233059 38233158 -63147363 - AluSg/x SINE Alu 0 302 207 885 144 5 113 chr15 38233188 38233250 -63147271 - L1MC3 LINE L1 -108 7677 7610 2240 119 0 0 chr15 38233250 38233545 -63146976 - AluSg SINE Alu -15 295 1 885 144 5 113 chr15 38233545 38233590 -63146931 - L1MC3 LINE L1 -175 7610 7562 2267 102 13 0 chr15 38233590 38233895 -63146626 - AluSx SINE Alu -3 309 1 885 144 5 113 chr15 38233895 38234008 -63146513 - L1MC3 LINE L1 -223 7562 7480 914 209 88 55 chr15 38234008 38234175 -63146346 - L1MC3 LINE L1 -3170 2910 2727 2219 107 7 0 chr15 38234175 38234465 -63146056 + AluSq SINE Alu 1 292 -21 914 209 88 55 chr15 38234465 38234604 -63145917 - L1MC3 LINE L1 -3353 2727 2594 1303 183 8 52 chr15 38234621 38234643 -63145878 - AluJo SINE Alu -21 291 270 2056 117 3 0 chr15 38234643 38234953 -63145568 + AluSq SINE Alu 1 311 0 1303 183 8 52 chr15 38234953 38235197 -63145324 - AluJo SINE Alu -42 270 36 2850 251 135 44 chr15 38235197 38235786 -63144735 - L1MC3 LINE L1 -3547 2533 1999 2228 108 0 0 chr15 38235786 38236081 -63144440 + AluSq SINE Alu 1 295 -18 2850 251 135 44 chr15 38236081 38236429 -63144092 - L1MC3 LINE L1 -4081 1999 1684 2130 125 3 6 chr15 38236429 38236742 -63143779 - AluSx SINE Alu 0 312 1 2850 251 135 44 chr15 38236742 38237606 -63142915 - L1MC3 LINE L1 -4396 1684 901 2517 72 0 7 chr15 38237606 38237911 -63142610 - AluSg SINE Alu -6 304 2 2850 251 135 44 chr15 38237911 38238381 -63142140 - L1MC3 LINE L1 -5179 901 2 550 335 51 4 chr15 38238678 38239031 -63141490 + L2 LINE L2 2720 3087 -185 1405 208 136 59 chr15 38239273 38239568 -63140953 - MER20B DNA MER1_type -28 755 484 1736 134 84 0 chr15 38239568 38239829 -63140692 + AluSg SINE Alu 6 288 -22 1405 208 136 59 chr15 38239829 38239961 -63140560 - MER20B DNA MER1_type -299 484 364 1713 158 37 3 chr15 38239961 38240258 -63140263 + AluSx SINE Alu 1 307 -5 1405 208 136 59 chr15 38240258 38240358 -63140163 - MER20B DNA MER1_type -419 364 186 570 136 88 61 chr15 38240363 38240438 -63140083 + L1MA8 LINE L1 6137 6208 -83 4299 173 53 24 chr15 38240438 38241040 -63139481 + MER6 DNA MER2_type 1 584 -281 2339 83 3 10 chr15 38241040 38241341 -63139180 - AluSc SINE Alu -10 299 1 1704 196 7 3 chr15 38241342 38241638 -63138883 - AluJo SINE Alu -11 301 5 4299 173 53 24 chr15 38241638 38241870 -63138651 + MER6 DNA MER2_type 583 861 -4 570 136 88 61 chr15 38241870 38241941 -63138580 + L1MA8 LINE L1 6208 6287 -4 2238 85 7 4 chr15 38241952 38242233 -63138288 + AluSq SINE Alu 1 282 -31 216 0 0 0 chr15 38242238 38242262 -63138259 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1717 177 0 35 chr15 38242281 38242598 -63137923 + AluJo SINE Alu 1 306 -6 1245 147 35 15 chr15 38242714 38242966 -63137555 - L1MB3 LINE L1 -15 6165 5914 1123 203 59 53 chr15 38242966 38243306 -63137215 + MER2 DNA MER2_type 3 344 0 1245 147 35 15 chr15 38243306 38243328 -63137193 - L1MB3 LINE L1 -266 5914 5894 318 271 84 0 chr15 38243342 38243449 -63137072 - L1MC4a LINE L1 -1892 5916 5801 203 156 0 0 chr15 38243516 38243548 -63136973 + (CA)n Simple_repeat Simple_repeat 2 33 0 2257 101 7 3 chr15 38243878 38244175 -63136346 + AluSx SINE Alu 1 298 -14 225 0 0 0 chr15 38244177 38244202 -63136319 + (CA)n Simple_repeat Simple_repeat 2 26 0 2197 97 43 7 chr15 38244260 38244560 -63135961 - AluSp SINE Alu -2 311 1 2327 96 0 10 chr15 38244837 38245149 -63135372 + AluSx SINE Alu 1 309 -3 1374 89 6 6 chr15 38245149 38245329 -63135192 + AluSq SINE Alu 120 299 -14 409 266 106 49 chr15 38246584 38246810 -63133711 + MIR SINE MIR 24 262 0 948 93 0 16 chr15 38246836 38246965 -63133556 - AluJb SINE Alu -185 127 1 216 86 0 0 chr15 38246973 38247008 -63133513 + (TTAG)n Simple_repeat Simple_repeat 2 36 0 2090 129 0 0 chr15 38247008 38247294 -63133227 - AluSx SINE Alu -26 286 1 2474 67 0 0 chr15 38247485 38247783 -63132738 + AluSc SINE Alu 5 302 -7 466 172 46 0 chr15 38248056 38248143 -63132378 - MER20 DNA MER1_type -3 216 126 1651 176 11 0 chr15 38248143 38248415 -63132106 + AluJb SINE Alu 1 275 -37 207 0 0 0 chr15 38248416 38248439 -63132082 + (TC)n Simple_repeat Simple_repeat 2 24 0 597 176 81 37 chr15 38248472 38248608 -63131913 - MER20 DNA MER1_type -75 144 3 251 323 103 62 chr15 38248648 38249452 -63131069 + L2 LINE L2 1126 1962 -1352 286 70 0 0 chr15 38249479 38249522 -63130999 - AluSc SINE Alu -3 296 254 288 103 0 0 chr15 38249544 38249583 -63130938 - AluSq SINE Alu -130 173 135 2256 85 6 29 chr15 38249583 38249899 -63130622 - AluSq SINE Alu -2 311 3 331 274 69 129 chr15 38250189 38250539 -63129982 + L2 LINE L2 2939 3267 -5 1487 104 125 57 chr15 38251476 38251517 -63129004 - THE1C LTR MaLR 0 375 338 2169 134 0 0 chr15 38251517 38251824 -63128697 + AluSx SINE Alu 1 307 -5 1487 104 125 57 chr15 38251824 38252062 -63128459 - THE1C LTR MaLR -37 338 77 1944 139 16 19 chr15 38252111 38252287 -63128234 - AluSg SINE Alu 0 310 134 2407 89 0 0 chr15 38252287 38252591 -63127930 - AluSx SINE Alu -8 304 1 1944 139 16 19 chr15 38252591 38252723 -63127798 - AluSg SINE Alu -176 134 3 6871 120 33 14 chr15 38252726 38253776 -63126745 - THE1C-int LTR MaLR -6 1574 505 2277 83 10 13 chr15 38254155 38254455 -63126066 - AluSp SINE Alu -14 299 1 1331 142 23 14 chr15 38254947 38255166 -63125355 + AluJb SINE Alu 1 221 -91 2328 115 0 3 chr15 38255461 38255773 -63124748 - AluSq SINE Alu -2 311 1 569 211 19 0 chr15 38256143 38256247 -63124274 + FLAM_A SINE Alu 1 106 -36 21 36 0 0 chr15 38256398 38256426 -63124095 + AT_rich Low_complexity Low_complexity 1 28 0 1699 175 6 38 chr15 38256481 38256795 -63123726 - AluJo SINE Alu -8 304 1 492 189 144 15 chr15 38256842 38256974 -63123547 - MIR SINE MIR -14 248 100 2523 56 10 0 chr15 38257103 38257406 -63123115 - AluY SINE Alu -4 307 2 640 174 43 17 chr15 38257487 38257602 -63122919 + FLAM_C SINE Alu 2 119 -24 216 0 0 0 chr15 38257603 38257627 -63122894 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 671 153 0 18 chr15 38258041 38258152 -63122369 - FLAM_A SINE Alu -14 128 20 2287 98 0 16 chr15 38258269 38258452 -63122069 - AluSx SINE Alu 0 312 135 2377 106 0 0 chr15 38258452 38258753 -63121768 - AluSx SINE Alu -11 301 1 2287 98 0 16 chr15 38258753 38258886 -63121635 - AluSx SINE Alu -177 135 1 1713 144 3 41 chr15 38259132 38259457 -63121064 + AluSx SINE Alu 2 315 0 502 318 103 29 chr15 38259667 38259909 -63120612 - MIR SINE MIR -1 261 2 1399 135 154 26 chr15 38260182 38260448 -63120073 - AluSg SINE Alu -10 300 1 209 130 43 0 chr15 38260586 38260632 -63119889 + T-rich Low_complexity Low_complexity 3 50 0 2346 101 7 0 chr15 38260641 38260939 -63119582 - AluSx SINE Alu -12 300 1 196 154 39 19 chr15 38260962 38261014 -63119507 + CT-rich Low_complexity Low_complexity 3 55 0 2282 106 0 6 chr15 38261017 38261328 -63119193 - AluSg SINE Alu -1 309 1 1475 196 38 14 chr15 38261330 38261621 -63118900 - AluJo SINE Alu -14 298 1 1855 165 3 0 chr15 38261904 38262201 -63118320 - AluJb SINE Alu -14 298 1 278 256 61 0 chr15 38262270 38262352 -63118169 + MIR SINE MIR 66 152 -110 505 120 0 27 chr15 38262918 38262991 -63117530 + Tigger2 DNA MER2_type 1 71 -2647 285 203 102 0 chr15 38262991 38263050 -63117471 - MER2 DNA MER2_type 0 345 281 1701 185 9 31 chr15 38263057 38263376 -63117145 + AluJb SINE Alu 1 312 0 395 222 25 0 chr15 38263378 38263459 -63117062 - MER8 DNA MER2_type -78 161 79 2404 91 0 0 chr15 38264524 38264821 -63115700 - AluSg SINE Alu -13 297 1 2173 131 0 0 chr15 38264870 38265168 -63115353 + AluSx SINE Alu 1 298 -14 1909 171 0 0 chr15 38265215 38265519 -63115002 - AluJb SINE Alu -8 304 1 207 265 265 0 chr15 38265684 38265767 -63114754 - L2 LINE L2 0 3313 3209 795 134 75 59 chr15 38265833 38266019 -63114502 - MER20 DNA MER1_type 0 219 31 2406 99 0 0 chr15 38267458 38267760 -63112761 - AluSg SINE Alu -8 302 1 780 157 15 22 chr15 38267799 38267933 -63112588 - FLAM_C SINE Alu 0 133 1 343 195 0 69 chr15 38268812 38268899 -63111622 - AluSq SINE Alu -131 172 92 2276 88 0 3 chr15 38268914 38269198 -63111323 - AluSq SINE Alu -30 283 1 216 0 0 0 chr15 38269198 38269222 -63111299 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1871 141 0 36 chr15 38269227 38269532 -63110989 - AluSx SINE Alu -18 294 1 2189 119 7 0 chr15 38269781 38270084 -63110437 - AluSx SINE Alu -7 305 1 853 204 25 0 chr15 38271250 38271412 -63109109 - FRAM SINE Alu 0 166 1 2379 86 0 3 chr15 38271422 38271712 -63108809 - AluSc SINE Alu -20 289 1 2280 104 0 0 chr15 38272015 38272303 -63108218 - AluSx SINE Alu -24 288 1 1753 164 0 7 chr15 38272805 38273092 -63107429 - AluJo SINE Alu -23 289 5 1840 149 58 0 chr15 38273507 38273802 -63106719 - AluJb SINE Alu 0 312 1 379 175 90 166 chr15 38273803 38273959 -63106562 + MER46C DNA MER2_type 22 188 -150 1662 149 0 88 chr15 38273959 38274129 -63106392 - AluJo SINE Alu -25 287 104 2406 107 0 0 chr15 38274129 38274438 -63106083 - AluSx SINE Alu -3 309 1 2085 147 7 0 chr15 38274445 38274751 -63105770 - AluSx SINE Alu -2 310 3 1662 149 0 88 chr15 38274751 38274880 -63105641 - AluJo SINE Alu -214 98 7 379 175 90 166 chr15 38274880 38274934 -63105587 + MER46C DNA MER2_type 188 216 -122 2459 86 3 0 chr15 38275129 38275432 -63105089 - AluSg SINE Alu -6 304 1 2669 49 0 0 chr15 38275570 38275877 -63104644 - AluY SINE Alu -4 307 1 23 68 0 0 chr15 38276305 38276349 -63104172 + AT_rich Low_complexity Low_complexity 1 44 0 195 42 0 0 chr15 38277800 38277824 -63102697 + (A)n Simple_repeat Simple_repeat 1 24 0 2212 110 7 3 chr15 38277926 38278225 -63102296 - AluSx SINE Alu -9 303 4 212 376 40 0 chr15 38278739 38278864 -63101657 - MIR SINE MIR -101 161 32 2249 99 0 3 chr15 38278873 38279199 -63101322 - AluSg SINE Alu 0 310 1 189 320 97 29 chr15 38279369 38279443 -63101078 + MER5A DNA MER1_type 70 154 -35 1871 136 55 33 chr15 38279443 38279773 -63100748 + MER1B DNA MER1_type 1 337 0 189 320 97 29 chr15 38279773 38279801 -63100720 + MER5A DNA MER1_type 154 179 -10 2594 47 0 3 chr15 38280169 38280468 -63100053 + AluY SINE Alu 1 298 -13 2361 100 0 0 chr15 38280535 38280845 -63099676 - AluSg SINE Alu 0 310 1 24 0 0 0 chr15 38281353 38281377 -63099144 + AT_rich Low_complexity Low_complexity 1 24 0 2317 94 0 7 chr15 38281922 38282221 -63098300 - AluSx SINE Alu -15 297 1 1297 149 0 5 chr15 38282471 38282666 -63097855 - AluJ SINE Alu -14 298 105 499 103 0 26 chr15 38282670 38282748 -63097773 + AluS SINE Alu 2 77 -236 806 142 0 0 chr15 38282748 38282868 -63097653 - AluJ SINE Alu -181 121 2 2418 101 0 0 chr15 38283662 38283969 -63096552 - AluSx SINE Alu -5 307 1 304 198 164 35 chr15 38283972 38284088 -63096433 + L1ME4a LINE L1 5990 6120 -1 1066 197 30 0 chr15 38284143 38284341 -63096180 - MER58A DNA MER1_type -19 205 2 635 217 87 60 chr15 38284350 38284534 -63095987 - MER5A DNA MER1_type 0 189 1 551 153 36 27 chr15 38285217 38285328 -63095193 - FRAM SINE Alu -22 154 43 1823 163 41 7 chr15 38285561 38285855 -63094666 + AluJo SINE Alu 1 304 -8 420 195 24 0 chr15 38286195 38286277 -63094244 - HsTC2 DNA Tc2 -1812 86 3 2232 100 17 0 chr15 38287169 38287468 -63093053 - AluSg SINE Alu -6 304 1 1277 107 25 10 chr15 38288827 38289023 -63091498 - Tigger1 DNA MER2_type 0 2418 2220 1166 123 25 0 chr15 38289028 38289191 -63091330 + AluSx SINE Alu 1 167 -145 2340 104 0 0 chr15 38289205 38289513 -63091008 - AluSg SINE Alu -2 308 1 5798 108 56 21 chr15 38289513 38290429 -63090092 - Tigger1 DNA MER2_type -726 1692 745 753 96 39 0 chr15 38290427 38290531 -63089990 - Tigger1 DNA MER2_type -1787 631 524 * 1747 102 120 11 chr15 38290532 38290798 -63089723 - AluSg1 SINE Alu -14 295 1 899 151 84 0 chr15 38290801 38290967 -63089554 - Tigger1 DNA MER2_type -1961 457 278 1158 172 20 5 chr15 38290968 38291166 -63089355 + AluJb SINE Alu 88 288 -24 1341 150 146 0 chr15 38291166 38291419 -63089102 - Tigger1 DNA MER2_type -2127 291 2 280 214 107 29 chr15 38291419 38291522 -63088999 + MIR SINE MIR 152 262 0 342 255 49 29 chr15 38291830 38291932 -63088589 + MIR SINE MIR 7 110 -152 638 112 0 0 chr15 38292203 38292292 -63088229 + FLAM_A SINE Alu 22 110 -32 201 39 0 0 chr15 38292293 38292319 -63088202 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 336 48 0 0 chr15 38292318 38292360 -63088161 + (CA)n Simple_repeat Simple_repeat 1 42 0 5111 126 46 29 chr15 38292360 38293272 -63087249 + L1MA4A LINE L1 5369 6296 -7 548 43 0 0 chr15 38293437 38293506 -63087015 - MER41A LTR ERV1 -86 468 400 596 220 15 8 chr15 38293508 38293640 -63086881 - FLAM_A SINE Alu 0 133 1 426 277 214 10 chr15 38293744 38293950 -63086571 - MIR SINE MIR -13 249 2 1677 168 18 11 chr15 38293987 38294273 -63086248 + AluJo SINE Alu 1 288 -24 2092 136 3 0 chr15 38294281 38294583 -63085938 + AluSx SINE Alu 1 303 -9 693 183 48 0 chr15 38294594 38294720 -63085801 + FLAM_C SINE Alu 2 133 0 2236 104 7 3 chr15 38294997 38295295 -63085226 + AluSx SINE Alu 1 299 -13 780 219 166 33 chr15 38295321 38295622 -63084899 - MER2 DNA MER2_type 0 344 4 2334 80 3 17 chr15 38295830 38296132 -63084389 + AluSx SINE Alu 1 298 -14 1746 171 25 0 chr15 38296306 38296586 -63083935 + AluSx SINE Alu 1 287 -25 2579 50 0 0 chr15 38296906 38297204 -63083317 - AluY SINE Alu -13 298 1 2167 98 28 0 chr15 38297204 38297491 -63083030 - AluSg SINE Alu -15 295 1 2238 114 0 3 chr15 38298014 38298313 -63082208 - AluSg SINE Alu -12 298 1 2202 119 0 10 chr15 38298343 38298645 -63081876 - AluSx SINE Alu -13 299 1 1205 163 202 0 chr15 38299425 38299677 -63080844 + AluJo SINE Alu 1 303 -9 1617 156 33 11 chr15 38299685 38299960 -63080561 + AluJb SINE Alu 1 281 -31 243 0 0 0 chr15 38299960 38299987 -63080534 + (CA)n Simple_repeat Simple_repeat 1 27 0 189 333 0 38 chr15 38300533 38300638 -63079883 + L2 LINE L2 1806 1906 -1408 584 203 101 0 chr15 38300651 38300799 -63079722 - L1ME4a LINE L1 -4 6117 5955 598 208 15 15 chr15 38301342 38301472 -63079049 + MER5A DNA MER1_type 60 189 0 2241 70 0 11 chr15 38304579 38304894 -63075627 - AluY SINE Alu 0 312 1 216 0 0 0 chr15 38304911 38304935 -63075586 + (A)n Simple_repeat Simple_repeat 1 24 0 894 149 11 96 chr15 38305260 38305448 -63075073 + AluJb SINE Alu 133 304 -8 183 300 82 27 chr15 38305477 38305587 -63074934 - MIR3 SINE MIR -7 201 86 226 274 0 0 chr15 38305722 38305773 -63074748 - LTR69 LTR ERVL -4 584 534 2403 81 3 0 chr15 38305816 38306111 -63074410 - AluY SINE Alu -15 296 1 1805 138 29 0 chr15 38306128 38306404 -63074117 - AluSx SINE Alu 0 312 29 228 100 0 0 chr15 38306516 38306546 -63073975 + Alu SINE Alu 14 43 -260 374 74 0 0 chr15 38306816 38306870 -63073651 - AluSc SINE Alu 0 299 246 395 268 24 31 chr15 38307146 38307273 -63073248 + AluSg/x SINE Alu 175 300 0 2027 113 0 42 chr15 38307275 38307584 -63072937 + AluSx SINE Alu 3 298 -14 856 209 50 0 chr15 38307586 38307768 -63072753 + MER58B DNA MER1_type 147 337 -4 1767 151 0 45 chr15 38308108 38308247 -63072274 + AluJo SINE Alu 6 127 -185 2381 72 7 0 chr15 38308247 38308538 -63071983 + AluSc SINE Alu 1 293 -16 1767 151 0 45 chr15 38308538 38308689 -63071832 + AluJo SINE Alu 127 283 -29 2066 139 3 0 chr15 38308743 38309037 -63071484 + AluSx SINE Alu 1 295 -17 657 204 156 0 chr15 38309077 38309244 -63071277 + L1MB4 LINE L1 5988 6180 0 187 265 88 0 chr15 38309544 38309612 -63070909 - MIR SINE MIR -121 141 68 296 189 0 0 chr15 38309928 38309981 -63070540 + Alu SINE Alu 1 53 -249 2290 75 7 0 chr15 38310270 38310549 -63069972 + AluSp SINE Alu 21 301 -12 2397 105 0 3 chr15 38311211 38311524 -63068997 + AluSx SINE Alu 1 312 0 2013 122 17 3 chr15 38311885 38312172 -63068349 - AluSx SINE Alu -21 291 1 529 261 37 22 chr15 38312172 38312306 -63068215 - MER58B DNA MER1_type -205 136 1 1524 121 0 130 chr15 38312331 38312654 -63067867 + AluSq SINE Alu 1 281 -32 2254 75 0 7 chr15 38312654 38312931 -63067590 + AluY SINE Alu 10 285 -26 411 98 81 40 chr15 38312931 38313104 -63067417 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chr15 38313595 38313616 -63066905 + AT_rich Low_complexity Low_complexity 1 21 0 2141 79 0 25 chr15 38314049 38314327 -63066194 - AluY SINE Alu -40 271 1 1896 162 0 3 chr15 38314376 38314672 -63065849 + AluJo SINE Alu 1 295 -17 210 244 0 0 chr15 38314748 38314793 -63065728 + (TAG)n Simple_repeat Simple_repeat 1 45 0 884 163 59 0 chr15 38314838 38314991 -63065530 - AluJb SINE Alu -14 298 137 1390 193 36 103 chr15 38315314 38315419 -63065102 + L1MC4 LINE L1 7554 7664 -378 573 226 40 16 chr15 38315419 38315543 -63064978 - FLAM_A SINE Alu -6 127 1 1390 193 36 103 chr15 38315543 38315578 -63064943 + L1MC4 LINE L1 7664 7700 -342 1773 151 21 11 chr15 38315578 38315862 -63064659 + AluJb SINE Alu 1 287 -25 1390 193 36 103 chr15 38315862 38316244 -63064277 + L1MC4 LINE L1 7700 8042 0 1142 188 118 30 chr15 38316323 38316594 -63063927 - AluJo SINE Alu -6 296 2 223 321 26 62 chr15 38317454 38317651 -63062870 + MIR3 SINE MIR 2 189 -57 860 151 145 38 chr15 38317681 38317867 -63062654 + AluJb SINE Alu 84 289 -23 2042 125 10 7 chr15 38318017 38318314 -63062207 + AluSx SINE Alu 1 298 -14 2041 154 0 13 chr15 38318530 38318835 -63061686 + AluSx SINE Alu 1 301 -11 2292 111 10 0 chr15 38318838 38319144 -63061377 + AluSc SINE Alu 1 309 0 2222 115 6 16 chr15 38319818 38320130 -63060391 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr15 38320166 38320188 -63060333 + AT_rich Low_complexity Low_complexity 1 22 0 800 170 0 22 chr15 38320487 38320622 -63059899 - FLAM_C SINE Alu 0 133 2 2279 100 0 3 chr15 38320665 38320965 -63059556 - AluSq SINE Alu -8 305 7 186 320 26 26 chr15 38321144 38321222 -63059299 - L2 LINE L2 -494 2820 2743 405 0 0 0 chr15 38321222 38321267 -63059254 + (TG)n Simple_repeat Simple_repeat 2 46 0 392 242 180 31 chr15 38321380 38321508 -63059013 + MER5A DNA MER1_type 34 180 -9 2255 105 0 3 chr15 38321755 38322049 -63058472 + AluSc SINE Alu 1 293 -16 268 340 58 0 chr15 38322125 38322281 -63058240 - L2 LINE L2 -974 2340 2176 1936 156 0 3 chr15 38322957 38323246 -63057275 + AluJb SINE Alu 6 293 -19 2351 86 0 17 chr15 38323256 38323391 -63057130 + AluSg SINE Alu 1 137 -173 2150 123 0 16 chr15 38323391 38323701 -63056820 + AluSx SINE Alu 1 305 -7 2351 86 0 17 chr15 38323701 38323866 -63056655 + AluSg SINE Alu 137 296 -14 2897 153 66 21 chr15 38323942 38324045 -63056476 + MER68 LTR ERV1 1 98 -464 1386 214 127 11 chr15 38324045 38324400 -63056121 - MSTD LTR MaLR 0 396 1 2897 153 66 21 chr15 38324400 38324826 -63055695 + MER68 LTR ERV1 98 554 -8 2035 144 0 22 chr15 38325122 38325441 -63055080 - AluJb SINE Alu 0 312 1 1613 172 40 7 chr15 38326070 38326372 -63054149 - AluJo SINE Alu 0 312 1 766 125 211 47 chr15 38326784 38326821 -63053700 + Tigger2 DNA MER2_type 6 36 -2682 2321 99 7 0 chr15 38326821 38327114 -63053407 - AluSc SINE Alu -14 295 1 766 125 211 47 chr15 38327114 38327178 -63053343 + Tigger2 DNA MER2_type 36 88 -2630 2247 105 10 0 chr15 38327178 38327483 -63053038 + AluSp SINE Alu 1 308 -5 766 125 211 47 chr15 38327483 38327657 -63052864 + Tigger2 DNA MER2_type 88 365 -2353 2872 133 79 6 chr15 38328519 38328999 -63051522 + Tigger2 DNA MER2_type 350 864 -1854 21 0 0 0 chr15 38329001 38329022 -63051499 + AT_rich Low_complexity Low_complexity 1 21 0 307 83 0 21 chr15 38329209 38329257 -63051264 - Alu SINE Alu -260 48 2 4195 93 30 71 chr15 38329261 38329298 -63051223 + Tigger2 DNA MER2_type 851 888 -1830 2201 113 0 0 chr15 38329298 38329632 -63050889 + AluSx SINE Alu 1 334 0 4195 93 30 71 chr15 38329632 38329686 -63050835 + Tigger2 DNA MER2_type 888 943 -1775 2338 102 3 6 chr15 38329686 38329999 -63050522 + AluSx SINE Alu 1 312 0 4195 93 30 71 chr15 38329999 38330595 -63049926 + Tigger2 DNA MER2_type 943 1512 -1206 2176 114 10 0 chr15 38330595 38330894 -63049627 - AluSx SINE Alu -10 302 1 2547 62 0 0 chr15 38333094 38333401 -63047120 - AluY SINE Alu -4 307 1 2282 98 30 0 chr15 38334055 38334350 -63046171 - AluSx SINE Alu -8 304 1 195 204 0 0 chr15 38335510 38335559 -63044962 + GA-rich Low_complexity Low_complexity 4 52 0 2056 91 11 21 chr15 38336486 38336773 -63043748 + AluSg SINE Alu 6 289 -21 1410 199 62 21 chr15 38337816 38338107 -63042414 + AluJo SINE Alu 1 303 -9 819 221 0 12 chr15 38338643 38338806 -63041715 - FRAM SINE Alu -5 161 1 492 292 28 48 chr15 38338841 38339091 -63041430 + MIR SINE MIR 15 259 -3 2064 123 57 29 chr15 38340817 38341167 -63039354 + MER46B DNA MER2_type 2 236 0 1704 181 0 4 chr15 38342827 38343103 -63037418 - AluJb SINE Alu -37 275 1 30 27 0 0 chr15 38343226 38343263 -63037258 + AT_rich Low_complexity Low_complexity 1 37 0 2218 103 7 10 chr15 38343510 38343811 -63036710 - AluSp SINE Alu -11 302 3 246 32 0 0 chr15 38344157 38344188 -63036333 + (TG)n Simple_repeat Simple_repeat 2 32 0 2089 117 12 55 chr15 38344737 38345063 -63035458 - AluSx SINE Alu 0 312 1 879 165 0 0 chr15 38345173 38345300 -63035221 - FLAM_C SINE Alu -16 127 1 1136 204 113 6 chr15 38345300 38345556 -63034965 - L1ME1 LINE L1 -33 6133 5855 2290 101 7 0 chr15 38345556 38345853 -63034668 - AluSq SINE Alu -14 299 1 1136 204 113 6 chr15 38345853 38345882 -63034639 - L1ME1 LINE L1 -311 5855 5831 2087 143 0 19 chr15 38345898 38346212 -63034309 - AluJo SINE Alu -4 308 1 2108 193 42 0 chr15 38346523 38346932 -63033589 - MSTB LTR MaLR 0 426 1 983 130 34 45 chr15 38346996 38347155 -63033366 - MER20 DNA MER1_type 0 219 61 2275 111 0 0 chr15 38347155 38347453 -63033068 + AluSx SINE Alu 1 298 -14 983 130 34 45 chr15 38347453 38347470 -63033051 - MER20 DNA MER1_type -158 61 45 188 229 260 21 chr15 38347473 38347569 -63032952 - MIR3 SINE MIR -48 160 42 355 302 188 10 chr15 38347778 38347980 -63032541 - MIR SINE MIR -13 249 12 436 269 86 11 chr15 38348037 38348223 -63032298 - MIR SINE MIR -55 207 8 2357 100 3 0 chr15 38348384 38348693 -63031828 - AluSx SINE Alu -2 310 1 596 273 87 0 chr15 38348836 38349019 -63031502 + MIR SINE MIR 31 229 -33 2568 55 0 16 chr15 38349601 38349910 -63030611 - AluY SINE Alu 0 311 8 232 185 19 0 chr15 38350010 38350064 -63030457 + GA-rich Low_complexity Low_complexity 1 55 0 300 316 59 0 chr15 38351219 38351355 -63029166 - MIR SINE MIR -114 148 5 1149 208 168 0 chr15 38353051 38353301 -63027220 - AluJb SINE Alu -8 294 3 2159 111 3 10 chr15 38353321 38353484 -63027037 - AluSx SINE Alu -16 296 134 2165 119 3 3 chr15 38353484 38353786 -63026735 - AluSx SINE Alu -10 302 1 2159 111 3 10 chr15 38353786 38353920 -63026601 - AluSx SINE Alu -178 134 1 594 63 0 0 chr15 38353920 38353999 -63026522 + (TG)n Simple_repeat Simple_repeat 2 80 0 2439 64 0 0 chr15 38353999 38354282 -63026239 - AluY SINE Alu -28 283 1 317 327 60 52 chr15 38354289 38354540 -63025981 - L1M4 LINE L1 -988 5158 4906 1161 146 110 0 chr15 38354546 38354765 -63025756 - L1MA4 LINE L1 -5 6295 6053 2159 124 13 0 chr15 38354863 38355170 -63025351 - AluSx SINE Alu 0 312 2 197 330 58 58 chr15 38355314 38355502 -63025019 + L2 LINE L2 2858 3045 -227 224 315 153 0 chr15 38355687 38355798 -63024723 - L2 LINE L2 0 3272 3145 264 159 143 0 chr15 38356352 38356415 -63024106 - L2 LINE L2 0 3272 3201 2396 98 3 0 chr15 38356466 38356771 -63023750 - AluSp SINE Alu -2 311 6 5693 71 18 16 chr15 38356814 38357589 -63022932 - SVA Other Other 0 1386 610 1946 136 27 7 chr15 38357794 38358095 -63022426 - AluSx SINE Alu -5 307 1 2577 179 91 62 chr15 38358325 38358933 -63021588 - MER51A LTR ERV1 -9 625 1 303 122 0 0 chr15 38359118 38359182 -63021339 - AluSg SINE Alu 0 305 242 1192 145 28 0 chr15 38359182 38359361 -63021160 - AluSg SINE Alu -121 189 6 2511 172 41 120 chr15 38359433 38360183 -63020338 - LTR8 LTR ERV1 0 691 1 279 340 90 13 chr15 38360306 38360462 -63020059 - L2 LINE L2 -1 3271 3104 2202 124 3 16 chr15 38360578 38360893 -63019628 - AluJo SINE Alu -1 311 1 278 274 186 0 chr15 38362046 38362170 -63018351 - MIR SINE MIR -6 256 110 1885 157 0 20 chr15 38362406 38362712 -63017809 - AluJb SINE Alu -12 300 1 987 127 0 0 chr15 38362918 38363052 -63017469 - FRAM SINE Alu -32 144 11 2399 107 0 0 chr15 38363146 38363454 -63017067 - AluSx SINE Alu 0 312 5 384 59 0 0 chr15 38363591 38363642 -63016879 + (CA)n Simple_repeat Simple_repeat 2 52 0 2293 105 3 0 chr15 38365399 38365693 -63014828 - AluSg SINE Alu -15 295 1 2115 142 0 0 chr15 38365766 38366075 -63014446 + AluSx SINE Alu 1 309 -3 801 259 119 16 chr15 38366136 38366493 -63014028 + MLT1I LTR MaLR 1 501 -10 2423 91 7 0 chr15 38366493 38366802 -63013719 - AluSq SINE Alu -2 311 1 1088 226 5 9 chr15 38367079 38367296 -63013225 + MER58A DNA MER1_type 1 216 -8 1851 141 0 31 chr15 38367915 38368233 -63012288 - AluJo SINE Alu 0 309 1 2086 136 7 0 chr15 38368658 38368966 -63011555 + AluSx SINE Alu 1 310 -2 632 241 77 0 chr15 38369421 38369591 -63010930 + MIR SINE MIR 59 241 -21 2164 133 0 0 chr15 38369638 38369939 -63010582 + AluSx SINE Alu 1 301 -11 2170 107 17 0 chr15 38369986 38370275 -63010246 + AluSg SINE Alu 1 294 -16 556 299 67 42 chr15 38370279 38370640 -63009881 + L1MC/D LINE L1 5273 5623 -683 2355 90 0 0 chr15 38370640 38370939 -63009582 + AluSg SINE Alu 1 299 -11 556 299 67 42 chr15 38370939 38370969 -63009552 + L1MC/D LINE L1 5623 5651 -655 1917 136 17 7 chr15 38370969 38371264 -63009257 - AluSx SINE Alu -14 298 1 556 299 67 42 chr15 38371264 38371383 -63009138 + L1MC/D LINE L1 5651 5809 -497 23 36 0 54 chr15 38371440 38371496 -63009025 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr15 38371532 38371553 -63008968 + AT_rich Low_complexity Low_complexity 1 21 0 277 191 26 104 chr15 38372526 38372565 -63007956 + MIR SINE MIR 111 151 -111 2489 87 0 0 chr15 38372565 38372876 -63007645 + AluY SINE Alu 1 311 0 277 191 26 104 chr15 38372876 38372951 -63007570 + MIR SINE MIR 151 216 -46 186 322 17 0 chr15 38373091 38373150 -63007371 + L2 LINE L2 3252 3311 -2 988 117 0 0 chr15 38373321 38373458 -63007063 - AluSp/q SINE Alu -16 297 161 1712 185 3 19 chr15 38373701 38374014 -63006507 - AluJb SINE Alu -4 308 1 1975 130 7 0 chr15 38374111 38374388 -63006133 - AluJo SINE Alu -33 279 1 306 304 37 92 chr15 38374395 38374549 -63005972 - L1M4 LINE L1 -2700 3446 3285 1894 108 104 0 chr15 38374549 38374827 -63005694 - AluSc SINE Alu -2 307 1 306 304 37 92 chr15 38374827 38375021 -63005500 - L1M4 LINE L1 -2861 3285 3117 919 216 46 27 chr15 38375057 38375323 -63005198 - L1ME1 LINE L1 -18 6148 5881 1140 139 80 15 chr15 38375323 38375524 -63004997 + AluJo SINE Alu 86 299 -13 1204 146 9 82 chr15 38375524 38375744 -63004777 - Charlie3 DNA MER1_type -2455 255 52 958 95 51 0 chr15 38376110 38376247 -63004274 - LTR23 LTR ERV1 -1 436 293 1293 132 6 0 chr15 38376266 38376448 -63004073 + AluJb SINE Alu 112 294 -18 1379 183 202 79 chr15 38376451 38376684 -63003837 - L1MC4 LINE L1 -265 7777 7574 2045 114 4 0 chr15 38376684 38377002 -63003519 - AluSx SINE Alu 0 327 9 1379 183 202 79 chr15 38377002 38377247 -63003274 - L1MC4 LINE L1 -468 7574 7238 258 175 50 12 chr15 38377272 38377352 -63003169 - L1MC4 LINE L1 -959 7083 7001 2251 169 23 8 chr15 38377353 38377743 -63002778 - MER57A LTR ERV1 0 403 8 910 219 131 25 chr15 38377762 38377999 -63002522 - L1MC4 LINE L1 -1228 6814 6553 823 193 62 0 chr15 38378089 38378250 -63002271 + FRAM SINE Alu 1 171 -5 252 59 0 0 chr15 38378291 38378325 -63002196 + (TC)n Simple_repeat Simple_repeat 2 35 0 814 219 12 0 chr15 38378326 38378486 -63002035 - FRAM SINE Alu -4 162 1 2397 92 0 0 chr15 38378926 38379220 -63001301 + AluSp SINE Alu 1 294 -19 26 64 0 0 chr15 38380208 38380255 -63000266 + AT_rich Low_complexity Low_complexity 1 47 0 230 161 32 97 chr15 38380391 38380484 -63000037 + L1ME4a LINE L1 5943 6029 -92 2101 127 0 0 chr15 38380499 38380791 -62999730 - AluSx SINE Alu -5 307 16 2092 138 7 0 chr15 38380994 38381284 -62999237 - AluSx SINE Alu -20 292 1 2282 102 3 0 chr15 38381293 38381587 -62998934 - AluSx SINE Alu -17 295 1 189 147 0 0 chr15 38381591 38381625 -62998896 + (T)n Simple_repeat Simple_repeat 1 34 0 2189 116 0 7 chr15 38381882 38382185 -62998336 - AluSx SINE Alu -10 302 2 1044 152 0 0 chr15 38382212 38382457 -62998064 + CT-rich Low_complexity Low_complexity 1 245 0 2175 92 3 54 chr15 38382457 38382774 -62997747 - AluSq SINE Alu -12 301 1 712 169 0 29 chr15 38382815 38382951 -62997570 - AluJb SINE Alu -18 294 163 331 188 0 0 chr15 38382953 38383011 -62997510 - Alu SINE Alu -257 51 1 1751 158 0 4 chr15 38383014 38383274 -62997247 + AluJb SINE Alu 40 298 -14 6994 197 54 64 chr15 38383274 38384984 -62995537 - L1MA3 LINE L1 -10 7714 5989 1582 205 7 3 chr15 38384984 38385281 -62995240 - AluJb SINE Alu -14 298 1 6994 197 54 64 chr15 38385281 38385954 -62994567 - L1MA3 LINE L1 -1735 5989 5311 2241 122 0 6 chr15 38385954 38386265 -62994256 - AluSc SINE Alu 0 309 1 6994 197 54 64 chr15 38386265 38387012 -62993509 - L1MA3 LINE L1 -2413 5311 4558 682 138 0 0 chr15 38387012 38387106 -62993415 - AluJ/FLAM SINE Alu -217 95 2 6994 197 54 64 chr15 38387106 38387263 -62993258 - L1MA3 LINE L1 -3166 4558 4401 1755 179 10 0 chr15 38387263 38387559 -62992962 + AluSx SINE Alu 1 299 -13 6994 197 54 64 chr15 38387559 38388676 -62991845 - L1MA3 LINE L1 -3323 4401 3270 878 193 0 0 chr15 38388677 38388822 -62991699 + FRAM SINE Alu 20 164 -12 1828 162 7 10 chr15 38388823 38389125 -62991396 + AluJb SINE Alu 1 301 -11 427 258 24 0 chr15 38389166 38389290 -62991231 - MIR SINE MIR -57 205 79 2254 110 3 3 chr15 38389597 38389906 -62990615 - AluSx SINE Alu -3 309 1 224 264 14 42 chr15 38390577 38390649 -62989872 + L2 LINE L2 3244 3313 0 21 57 0 0 chr15 38390724 38390759 -62989762 + AT_rich Low_complexity Low_complexity 1 35 0 955 139 73 0 chr15 38391087 38391238 -62989283 + AluSp SINE Alu 137 298 -15 2373 77 0 0 chr15 38391305 38391591 -62988930 - AluY SINE Alu -25 286 1 1699 171 3 21 chr15 38391977 38392263 -62988258 + AluJb SINE Alu 2 282 -30 2165 125 0 0 chr15 38392263 38392560 -62987961 + AluSg SINE Alu 1 297 -13 2308 112 6 6 chr15 38392746 38393059 -62987462 + AluSq SINE Alu 1 313 0 1980 153 0 7 chr15 38393170 38393478 -62987043 - AluSx SINE Alu -6 306 1 764 117 0 0 chr15 38394387 38394490 -62986031 + AluSg/x SINE Alu 198 300 -9 234 375 31 16 chr15 38394490 38394618 -62985903 - MIR SINE MIR -63 145 16 866 304 119 32 chr15 38394844 38395281 -62985240 - L2 LINE L2 -4 3309 2835 2077 135 0 7 chr15 38395545 38395842 -62984679 + AluSx SINE Alu 3 297 -15 1674 199 17 0 chr15 38395879 38396181 -62984340 - AluJo SINE Alu -5 307 1 2339 80 7 7 chr15 38396503 38396805 -62983716 + AluSc SINE Alu 1 302 -7 257 269 92 50 chr15 38396838 38396957 -62983564 - MIR3 SINE MIR -31 177 54 1712 59 31 9 chr15 38397329 38397551 -62982970 - L1PA5 LINE L1 0 6154 5928 2424 81 7 3 chr15 38397559 38397869 -62982652 - AluSp SINE Alu -2 311 1 214 267 168 20 chr15 38398125 38398226 -62982295 - L2 LINE L2 -8 3305 3190 410 240 133 33 chr15 38398577 38398727 -62981794 - L1MCa LINE L1 -1985 4441 4277 247 29 114 0 chr15 38398727 38398762 -62981759 - MER5C DNA MER1_type -4 320 282 1246 173 0 23 chr15 38398771 38398985 -62981536 - AluJo SINE Alu -19 293 85 577 155 130 6 chr15 38398985 38399146 -62981375 - MER5C DNA MER1_type -26 298 118 2251 120 3 0 chr15 38399153 38399461 -62981060 - AluSx SINE Alu -3 309 1 1509 108 38 46 chr15 38399480 38399720 -62980801 - AluSg SINE Alu -31 279 42 921 243 23 0 chr15 38399722 38399981 -62980540 - L1MCa LINE L1 -3113 3313 3049 7915 123 46 26 chr15 38399999 38400177 -62980344 - Tigger1 DNA MER2_type 0 2418 2245 2424 75 0 0 chr15 38400177 38400471 -62980050 + AluY SINE Alu 1 294 -17 7915 123 46 26 chr15 38400471 38401529 -62978992 - Tigger1 DNA MER2_type -173 2245 1154 1608 133 90 18 chr15 38401529 38401807 -62978714 - AluJb SINE Alu -14 298 1 7915 123 46 26 chr15 38401807 38401850 -62978671 - Tigger1 DNA MER2_type -1264 1154 1113 415 115 16 16 chr15 38401850 38401911 -62978610 + AluS SINE Alu 8 68 -250 1336 132 66 31 chr15 38403747 38403975 -62976546 - MER46A DNA MER2_type 0 236 1 280 301 12 0 chr15 38404527 38404610 -62975911 + L2 LINE L2 3186 3269 -3 828 194 157 8 chr15 38405226 38405474 -62975047 - MER33 DNA MER1_type -32 292 8 2355 141 21 24 chr15 38405708 38406084 -62974437 + THE1C LTR MaLR 1 375 0 11764 97 12 28 chr15 38406084 38407689 -62972832 + THE1C-int LTR MaLR 1 1580 0 2278 128 27 29 chr15 38407689 38408065 -62972456 + THE1C LTR MaLR 1 375 0 361 146 10 126 chr15 38408386 38408489 -62972032 - L1MB7 LINE L1 -19 6165 6075 2150 123 27 0 chr15 38408969 38409269 -62971252 + AluJb SINE Alu 5 312 0 5509 195 125 110 chr15 38409401 38410876 -62969645 - L1MCa LINE L1 -3976 2450 925 2832 7 0 0 chr15 38410876 38411179 -62969342 + AluYa5 SINE Alu 1 303 -8 5509 195 125 110 chr15 38411179 38412103 -62968418 - L1MCa LINE L1 -5501 925 16 2864 135 49 5 chr15 38412192 38412600 -62967921 - MSTB LTR MaLR 0 426 1 8413 174 90 11 chr15 38412600 38414130 -62966391 - MSTB-int LTR MaLR 0 1651 1 375 135 0 0 chr15 38414130 38414178 -62966343 - MSTB LTR MaLR 0 426 379 1379 150 191 24 chr15 38414178 38414472 -62966049 + MSTA LTR MaLR 1 343 -85 2248 145 38 11 chr15 38414481 38414853 -62965668 - MSTB LTR MaLR -44 382 1 319 115 58 0 chr15 38415680 38415732 -62964789 + MLT1C LTR MaLR 380 434 -33 715 196 119 26 chr15 38416048 38416242 -62964279 + L1MA9 LINE L1 6069 6280 -32 25 0 0 0 chr15 38416242 38416267 -62964254 + AT_rich Low_complexity Low_complexity 1 25 0 2132 45 4 0 chr15 38416500 38416747 -62963774 + L1PA4 LINE L1 5908 6155 0 683 46 0 23 chr15 38417479 38417566 -62962955 - L1PA8A LINE L1 -29 6102 6018 188 340 187 10 chr15 38419078 38419287 -62961234 + L2 LINE L2 2836 3081 -191 221 302 0 0 chr15 38419451 38419504 -62961017 + L2 LINE L2 3247 3299 -14 2085 107 4 0 chr15 38420114 38420419 -62960102 + AluSx SINE Alu 1 306 0 295 252 0 137 chr15 38420441 38420463 -62960058 + MIR SINE MIR 40 63 -145 422 251 11 99 chr15 38420463 38420654 -62959867 + MER5B DNA MER1_type 1 174 -4 295 252 0 137 chr15 38420654 38420762 -62959759 + MIR SINE MIR 63 152 -56 893 254 45 35 chr15 38421980 38422239 -62958282 + L1ME LINE L1 683 949 -5121 7947 173 151 39 chr15 38422239 38423817 -62956704 + MER52A LTR ERV1 1 1755 0 893 254 45 35 chr15 38423817 38423959 -62956562 + L1ME LINE L1 949 1088 -4982 2138 125 3 3 chr15 38424006 38424311 -62956210 + AluSq SINE Alu 1 305 -8 198 0 0 0 chr15 38424647 38424669 -62955852 + (A)n Simple_repeat Simple_repeat 1 22 0 2033 260 106 30 chr15 38424694 38425705 -62954816 + L1ME LINE L1 1183 2270 -3991 22 0 0 0 chr15 38426136 38426158 -62954363 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr15 38426409 38426441 -62954080 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr15 38427394 38427425 -62953096 + AT_rich Low_complexity Low_complexity 1 31 0 2390 80 0 10 chr15 38427943 38428257 -62952264 - AluY SINE Alu 0 311 1 29 0 0 0 chr15 38431381 38431410 -62949111 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 38433675 38433697 -62946824 + AT_rich Low_complexity Low_complexity 1 22 0 300 242 242 0 chr15 38433788 38433879 -62946642 + MIR SINE MIR 65 177 -85 1861 154 7 20 chr15 38434366 38434671 -62945850 - AluJb SINE Alu -11 301 1 1753 96 74 33 chr15 38434800 38435070 -62945451 - MER1B DNA MER1_type 0 339 59 2164 115 3 3 chr15 38435581 38435876 -62944645 + AluSx SINE Alu 5 299 -13 1171 159 48 5 chr15 38435926 38436115 -62944406 - AluJb SINE Alu -115 197 1 187 336 100 18 chr15 38436494 38436604 -62943917 - MIR SINE MIR -26 236 118 9870 126 105 99 chr15 38436649 38437323 -62943198 + L1M4c LINE L1 18 686 -5698 1182 151 0 11 chr15 38437323 38437509 -62943012 + AluJo SINE Alu 120 303 -9 9870 126 105 99 chr15 38437509 38438797 -62941724 + L1M4c LINE L1 686 2178 -4206 657 71 0 61 chr15 38438797 38438857 -62941664 + L1MB3 LINE L1 6084 6137 -46 1900 140 0 23 chr15 38438857 38439165 -62941356 + AluSx SINE Alu 1 301 -11 657 71 0 61 chr15 38439165 38439202 -62941319 + L1MB3 LINE L1 6137 6175 -8 1153 311 80 9 chr15 38440853 38441316 -62939205 + LTR33 LTR ERVL 18 513 -8 1848 157 17 3 chr15 38441483 38441783 -62938738 - AluJb SINE Alu -8 304 1 843 163 0 7 chr15 38441787 38441946 -62938575 - AluSg/x SINE Alu 0 311 154 288 234 0 0 chr15 38442313 38442390 -62938131 + T-rich Low_complexity Low_complexity 1 77 0 34 0 0 0 chr15 38442793 38442827 -62937694 + AT_rich Low_complexity Low_complexity 1 34 0 1992 138 3 0 chr15 38442827 38443123 -62937398 - AluSq SINE Alu -16 297 1 2045 117 41 3 chr15 38446108 38446399 -62934122 - AluSx SINE Alu -10 302 1 1852 162 3 13 chr15 38447360 38447669 -62932852 + AluJb SINE Alu 1 306 -6 728 216 0 0 chr15 38447722 38447847 -62932674 + FLAM_C SINE Alu 2 126 -7 1407 220 0 14 chr15 38447853 38448139 -62932382 + AluJo SINE Alu 1 282 -30 2321 61 17 14 chr15 38448139 38448432 -62932089 + AluY SINE Alu 1 294 -17 12870 121 37 34 chr15 38448432 38449490 -62931031 - Tigger1 DNA MER2_type -170 2248 1194 1623 133 90 18 chr15 38449490 38449768 -62930753 - AluJb SINE Alu -14 298 1 12870 121 37 34 chr15 38449768 38449814 -62930707 - Tigger1 DNA MER2_type -1224 1194 1150 2214 91 0 4 chr15 38449814 38450090 -62930431 + AluSq SINE Alu 11 285 -28 12870 121 37 34 chr15 38450090 38451057 -62929464 - Tigger1 DNA MER2_type -1268 1150 171 1291 278 50 24 chr15 38451067 38451876 -62928645 - L1MEc LINE L1 -3398 3028 2234 2216 127 0 0 chr15 38452090 38452389 -62928132 - AluSx SINE Alu -13 299 1 310 265 72 0 chr15 38452393 38452528 -62927993 - L1M2 LINE L1 -4338 2089 1538 226 106 197 61 chr15 38452610 38452676 -62927845 - L1MEc LINE L1 -4871 1334 1260 707 167 0 9 chr15 38452835 38452949 -62927572 - FLAM_A SINE Alu -16 126 14 462 222 73 52 chr15 38452950 38452961 -62927560 - L1MEc LINE L1 -5034 1183 1174 2288 102 0 0 chr15 38452961 38453254 -62927267 - AluSg SINE Alu -17 293 1 462 222 73 52 chr15 38453254 38453489 -62927032 - L1MEc LINE L1 -5043 1174 945 1938 137 7 17 chr15 38453489 38453789 -62926732 - AluSq SINE Alu -16 297 1 2309 93 13 0 chr15 38453789 38454089 -62926432 - AluSp SINE Alu -9 304 1 462 222 73 52 chr15 38454089 38454169 -62926352 - L1MEc LINE L1 -5271 946 862 213 303 204 23 chr15 38454665 38454797 -62925724 + L2 LINE L2 3113 3268 -4 237 216 81 14 chr15 38455835 38455909 -62924612 + L3b LINE CR1 1362 1440 -143 206 83 56 0 chr15 38456077 38456113 -62924408 + A-rich Low_complexity Low_complexity 4 41 0 2024 133 3 10 chr15 38456595 38456904 -62923617 - AluSx SINE Alu -5 307 1 1022 245 129 57 chr15 38457299 38458361 -62922160 + L1ME1 LINE L1 1317 2607 -3956 * 5892 147 36 30 chr15 38458333 38458926 -62921595 + L1PB1 LINE L1 4353 4941 -1446 2350 87 3 3 chr15 38458926 38459224 -62921297 + AluSx SINE Alu 1 298 -14 5892 147 36 30 chr15 38459224 38460001 -62920520 + L1PB1 LINE L1 4941 5736 -651 1778 125 87 3 chr15 38460001 38460289 -62920232 + AluSx SINE Alu 1 312 0 5892 147 36 30 chr15 38460289 38460944 -62919577 + L1PB1 LINE L1 5736 6386 -1 1416 210 55 31 chr15 38460939 38461000 -62919521 + L1ME1 LINE L1 2540 2598 -3784 * 2315 106 0 10 chr15 38461000 38461301 -62919220 + AluSq SINE Alu 1 298 -15 1416 210 55 31 chr15 38461301 38461658 -62918863 + L1ME1 LINE L1 2598 2968 -3414 2729 201 86 47 chr15 38461663 38462079 -62918442 + L1ME1 LINE L1 4984 5382 -1020 1833 154 10 17 chr15 38462079 38462214 -62918307 - AluJb SINE Alu -21 291 157 270 0 0 0 chr15 38462214 38462244 -62918277 + (TG)n Simple_repeat Simple_repeat 2 31 0 1833 154 10 17 chr15 38462244 38462401 -62918120 - AluJb SINE Alu -155 157 1 2172 123 0 10 chr15 38462409 38462709 -62917812 - AluSx SINE Alu -15 297 1 2729 201 86 47 chr15 38462709 38462756 -62917765 + L1ME1 LINE L1 5388 5432 -970 2073 137 10 3 chr15 38462756 38463063 -62917458 + AluSx SINE Alu 1 309 -3 2729 201 86 47 chr15 38463063 38463439 -62917082 + L1ME1 LINE L1 5432 5792 -610 2044 132 7 3 chr15 38463439 38463749 -62916772 - AluY SINE Alu 0 311 1 2729 201 86 47 chr15 38463749 38464168 -62916353 + L1ME1 LINE L1 5792 6288 -114 2305 104 3 3 chr15 38464213 38464521 -62916000 + AluSq SINE Alu 6 313 0 582 177 65 108 chr15 38465327 38465371 -62915150 + MER5B DNA MER1_type 1 45 -133 1539 176 60 25 chr15 38465371 38465533 -62914988 - AluJo SINE Alu -18 294 116 231 36 0 0 chr15 38465533 38465561 -62914960 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 1539 176 60 25 chr15 38465561 38465682 -62914839 - AluJo SINE Alu -196 116 1 582 177 65 108 chr15 38465682 38465823 -62914698 + MER5B DNA MER1_type 45 178 0 21 71 0 0 chr15 38465865 38465907 -62914614 + AT_rich Low_complexity Low_complexity 1 42 0 748 133 0 89 chr15 38465940 38466075 -62914446 + FLAM_A SINE Alu 11 133 -9 535 146 0 0 chr15 38468124 38468213 -62912308 - AluJ/FRAM SINE Alu 0 312 224 1685 207 0 10 chr15 38468283 38468592 -62911929 - AluJb SINE Alu -6 306 1 324 0 0 0 chr15 38468715 38468751 -62911770 + (CA)n Simple_repeat Simple_repeat 2 37 0 959 169 38 11 chr15 38468879 38469062 -62911459 - MER5A DNA MER1_type -1 188 1 186 265 20 0 chr15 38470114 38470163 -62910358 - L2 LINE L2 -84 3229 3180 186 333 30 10 chr15 38470573 38470672 -62909849 - L2 LINE L2 -605 2709 2609 2200 129 0 7 chr15 38470731 38471040 -62909481 - AluSx SINE Alu -5 307 1 2434 90 0 0 chr15 38471101 38471402 -62909119 - AluSg SINE Alu -3 307 7 2111 116 14 3 chr15 38471410 38471702 -62908819 - AluSq SINE Alu -17 296 2 304 130 0 0 chr15 38472793 38472847 -62907674 - L1ME4a LINE L1 -1 6120 6067 205 275 147 18 chr15 38473449 38473558 -62906963 + MIR SINE MIR 23 145 -63 2300 138 0 0 chr15 38473693 38474004 -62906517 + AluSq SINE Alu 1 311 -2 2209 119 0 19 chr15 38475052 38475212 -62905309 - AluSx SINE Alu -6 306 153 3409 103 34 16 chr15 38475212 38475716 -62904805 - LTR10D LTR ERV1 0 513 1 2209 119 0 19 chr15 38475716 38475867 -62904654 - AluSx SINE Alu -159 153 1 191 30 0 61 chr15 38476065 38476098 -62904423 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 2349 104 0 0 chr15 38476741 38477040 -62903481 + AluSx SINE Alu 1 299 -13 2303 116 3 0 chr15 38477045 38477355 -62903166 + AluSq SINE Alu 1 311 -2 437 316 50 9 chr15 38477396 38477614 -62902907 + MIR SINE MIR 24 250 -12 378 213 220 7 chr15 38479110 38479251 -62901270 + MIR SINE MIR 76 246 -16 2111 103 0 45 chr15 38480896 38481206 -62899315 + AluSc SINE Alu 1 296 -13 314 281 82 17 chr15 38481536 38481716 -62898805 + MIR SINE MIR 8 203 -59 1262 183 23 5 chr15 38483558 38483777 -62896744 - MER58A DNA MER1_type 0 224 2 2322 112 0 0 chr15 38484243 38484539 -62895982 + AluSx SINE Alu 1 296 -16 322 221 84 69 chr15 38484590 38484721 -62895800 - L1MC5 LINE L1 -121 7840 7708 222 316 42 0 chr15 38487050 38487145 -62893376 + L2 LINE L2 3162 3260 -12 252 264 70 97 chr15 38487205 38487837 -62892684 - L1MC4 LINE L1 -2 8040 7292 204 338 0 0 chr15 38489338 38489409 -62891112 + (CCCCAG)n Simple_repeat Simple_repeat 1 71 0 663 310 184 33 chr15 38499990 38500947 -62879574 - L2 LINE L2 -1 3312 2206 249 204 22 80 chr15 38501095 38501201 -62879320 - L1MC4a LINE L1 -1889 5919 5821 790 192 0 0 chr15 38501201 38501326 -62879195 - FLAM_C SINE Alu -8 125 1 249 204 22 80 chr15 38501326 38501356 -62879165 - L1MC4a LINE L1 -1987 5821 5791 2032 162 26 0 chr15 38501444 38501796 -62878725 + MER46B DNA MER2_type 1 236 0 1158 276 173 18 chr15 38501906 38502818 -62877703 - L1MC4a LINE L1 -753 5393 4885 341 129 71 0 chr15 38502965 38503035 -62877486 - L1MA6 LINE L1 0 7719 7645 5495 194 53 13 chr15 38503162 38503448 -62877073 - L1MA6 LINE L1 -68 7651 7378 2624 61 3 0 chr15 38503448 38503758 -62876763 - AluY SINE Alu 0 311 1 2112 139 0 0 chr15 38503761 38504055 -62876466 - AluSx SINE Alu -1 311 18 5495 194 53 13 chr15 38504055 38505613 -62874908 - L1MA6 LINE L1 -342 7377 5725 614 170 19 0 chr15 38505613 38505719 -62874802 + LTR59 LTR ERV1 1 108 -489 2222 112 7 7 chr15 38505739 38506043 -62874478 + AluSg SINE Alu 1 304 -6 1057 157 0 0 chr15 38506043 38506221 -62874300 + LTR59 LTR ERV1 85 262 -335 2403 96 0 0 chr15 38506227 38506528 -62873993 - AluSg SINE Alu -9 301 1 2002 192 7 7 chr15 38506528 38506971 -62873550 - L1MA6 LINE L1 -4385 3180 2738 812 177 0 8 chr15 38506997 38507121 -62873400 - FLAM_C SINE Alu -20 123 1 3229 220 22 37 chr15 38507121 38507377 -62873144 - L1MA6 LINE L1 -4809 2756 2498 2195 112 0 37 chr15 38507377 38507699 -62872822 - AluSg SINE Alu 0 310 1 3229 220 22 37 chr15 38507699 38507922 -62872599 - L1MA6 LINE L1 -5067 2498 2273 2455 86 0 9 chr15 38507922 38508237 -62872284 - AluSq SINE Alu -1 312 1 3229 220 22 37 chr15 38508237 38508702 -62871819 - L1MA6 LINE L1 -5292 2273 1825 1128 295 88 22 chr15 38508724 38509435 -62871086 - L1MA6 LINE L1 -6654 835 24 1685 166 10 28 chr15 38509470 38509760 -62870761 - AluSx SINE Alu -27 285 1 1972 186 0 6 chr15 38509762 38510074 -62870447 - AluSx SINE Alu -2 310 1 227 240 77 33 chr15 38510222 38510405 -62870116 - L1 LINE L1 -1658 4488 4298 2269 95 10 7 chr15 38510475 38510771 -62869750 - AluSx SINE Alu -15 297 1 235 249 116 64 chr15 38510929 38511102 -62869419 - L1 LINE L1 -2309 3837 3656 250 248 28 28 chr15 38511320 38511429 -62869092 + L1P3 LINE L1 5696 5804 -368 1788 113 0 8 chr15 38511490 38511738 -62868783 - AluSg SINE Alu -11 299 54 1550 175 77 0 chr15 38511913 38512187 -62868334 + AluJb SINE Alu 1 295 -17 920 240 18 22 chr15 38512312 38512537 -62867984 + MER58A DNA MER1_type 1 224 0 516 188 30 0 chr15 38512717 38512818 -62867703 - U13 snRNA snRNA 0 104 1 335 165 38 38 chr15 38512820 38512899 -62867622 - L1MC4a LINE L1 -376 7432 7354 412 169 56 0 chr15 38512902 38512991 -62867530 + MER53 DNA DNA 2 95 -94 1438 218 66 66 chr15 38513003 38513139 -62867382 - L1MC4a LINE L1 -451 7357 7222 1517 175 43 14 chr15 38513139 38513419 -62867102 + AluJb SINE Alu 1 288 -24 1438 218 66 66 chr15 38513419 38513430 -62867091 - L1MC4a LINE L1 -586 7222 7212 2076 108 0 0 chr15 38513430 38513707 -62866814 + AluSg SINE Alu 1 277 -33 1438 218 66 66 chr15 38513707 38514083 -62866438 - L1MC4a LINE L1 -596 7212 6830 1937 132 10 16 chr15 38514083 38514387 -62866134 - AluJb SINE Alu -10 302 1 1438 218 66 66 chr15 38514387 38514406 -62866115 - L1MC4a LINE L1 -977 6831 6813 1147 139 130 9 chr15 38514409 38514655 -62865866 - L1MB4 LINE L1 -50 6130 5855 849 238 67 67 chr15 38514655 38514916 -62865605 - MLT1C LTR MaLR 0 467 204 216 0 0 0 chr15 38514916 38514940 -62865581 + (TC)n Simple_repeat Simple_repeat 2 25 0 849 238 67 67 chr15 38514940 38514960 -62865561 - MLT1C LTR MaLR -262 205 186 660 244 24 18 chr15 38514992 38515160 -62865361 - FRAM SINE Alu 0 176 8 2476 76 0 3 chr15 38515165 38515466 -62865055 - AluSx SINE Alu -12 300 1 686 202 40 17 chr15 38515474 38515647 -62864874 - MLT1C LTR MaLR -290 177 1 6524 207 86 32 chr15 38515649 38516090 -62864431 - L1MB4 LINE L1 -327 5857 5441 765 0 83 24 chr15 38516090 38516259 -62864262 + (TA)n Simple_repeat Simple_repeat 2 180 0 6524 207 86 32 chr15 38516259 38516873 -62863648 - L1MB4 LINE L1 -743 5441 4861 734 167 0 0 chr15 38516873 38516987 -62863534 - FLAM_C SINE Alu -19 114 1 6524 207 86 32 chr15 38516987 38518214 -62862307 - L1MB4 LINE L1 -1323 4861 3116 2476 52 0 13 chr15 38518214 38518521 -62862000 - AluY SINE Alu -8 303 1 6524 207 86 32 chr15 38518521 38518776 -62861745 - L1MB4 LINE L1 -3068 3116 2876 331 169 31 0 chr15 38518815 38518880 -62861641 - FLAM_A SINE Alu -49 84 18 379 298 12 71 chr15 38518886 38519054 -62861467 - L1 LINE L1 -1085 5061 4904 417 325 118 44 chr15 38519062 38519536 -62860985 - L2 LINE L2 -1064 2250 1742 832 155 0 62 chr15 38519553 38519676 -62860845 + AluJb SINE Alu 1 113 -199 2073 74 56 11 chr15 38519676 38519961 -62860560 - AluSx SINE Alu -14 298 1 832 155 0 62 chr15 38519961 38519998 -62860523 + AluJb SINE Alu 113 151 -161 925 150 0 0 chr15 38521358 38521491 -62859030 + FLAM_C SINE Alu 1 133 0 2029 138 3 10 chr15 38521496 38521794 -62858727 + AluJb SINE Alu 1 296 -16 2356 85 3 19 chr15 38525506 38525813 -62854708 + AluSx SINE Alu 1 302 -10 630 253 44 16 chr15 38525905 38526087 -62854434 - MER5A DNA MER1_type -2 187 1 1925 138 14 14 chr15 38526483 38526780 -62853741 - AluJb SINE Alu -15 297 1 735 203 20 34 chr15 38527124 38527272 -62853249 - FRAM SINE Alu -14 162 17 1979 125 10 14 chr15 38527876 38528165 -62852356 - AluSx SINE Alu -24 288 1 2078 114 52 0 chr15 38529866 38530155 -62850366 + AluSg SINE Alu 1 304 -6 188 294 55 28 chr15 38530990 38531099 -62849422 - L3b LINE CR1 -316 1267 1156 827 231 20 25 chr15 38531123 38531322 -62849199 - MER58A DNA MER1_type -26 198 1 217 256 22 44 chr15 38532689 38532779 -62847742 + GA-rich Low_complexity Low_complexity 1 88 0 239 318 164 9 chr15 38536133 38536243 -62844278 - MIR SINE MIR -122 140 14 2310 91 7 7 chr15 38537433 38537729 -62842792 - AluSq SINE Alu -17 296 1 1526 163 26 64 chr15 38538760 38539073 -62841448 - AluJb SINE Alu -11 301 1 842 187 15 49 chr15 38540247 38540450 -62840071 + AluSp SINE Alu 108 303 -10 2070 129 0 29 chr15 38541329 38541640 -62838881 + AluSx SINE Alu 1 302 -10 2388 95 3 0 chr15 38541719 38542025 -62838496 + AluSq SINE Alu 1 307 -6 819 168 8 0 chr15 38542168 38542299 -62838222 + FLAM_A SINE Alu 2 133 0 1791 142 36 45 chr15 38542515 38542824 -62837697 - AluJo SINE Alu -4 308 3 2389 95 7 0 chr15 38543789 38544094 -62836427 + AluSp SINE Alu 1 307 -6 4694 184 55 25 chr15 38544094 38545519 -62835002 + L1M2c LINE L1 172 1904 -4885 2459 100 3 0 chr15 38545519 38545830 -62834691 + AluSx SINE Alu 1 312 0 4694 184 55 25 chr15 38545830 38545974 -62834547 + L1M2c LINE L1 1904 2042 -4747 4423 127 27 114 chr15 38546007 38547269 -62833252 + L1MA5A LINE L1 4403 5551 -743 2494 80 49 20 chr15 38547269 38547619 -62832902 + THE1B LTR MaLR 5 364 0 4810 98 30 43 chr15 38547619 38547851 -62832670 + L1MA5A LINE L1 5541 5775 -522 2059 120 3 3 chr15 38547851 38548165 -62832356 + AluSx SINE Alu 1 312 0 4810 98 30 43 chr15 38548165 38548500 -62832021 + L1MA5A LINE L1 5775 6113 -184 813 73 0 0 chr15 38548500 38548609 -62831912 + (TA)n Simple_repeat Simple_repeat 2 110 0 2273 122 3 0 chr15 38548618 38548929 -62831592 - AluSx SINE Alu 0 312 1 4810 98 30 43 chr15 38548929 38549108 -62831413 + L1MA5A LINE L1 6121 6288 -9 40351 73 10 6 chr15 38549554 38555674 -62824847 + L1PA6 LINE L1 11 6152 -2 275 375 62 0 chr15 38555750 38555862 -62824659 + L2 LINE L2 3138 3256 -16 181 327 64 36 chr15 38555897 38556007 -62824514 - L3 LINE CR1 -79 1498 1386 2313 84 3 10 chr15 38556380 38556689 -62823832 - AluSg1 SINE Alu -2 307 1 1745 202 58 106 chr15 38557444 38557999 -62822522 + MLT1F LTR MaLR 3 530 -12 881 273 5 5 chr15 38558080 38558300 -62822221 + AluJo SINE Alu 1 220 -92 266 111 0 0 chr15 38558300 38558336 -62822185 + AluJ SINE Alu 86 121 -181 225 0 0 0 chr15 38558336 38558361 -62822160 + (CAA)n Simple_repeat Simple_repeat 2 26 0 816 206 11 22 chr15 38558457 38558637 -62821884 + AluJ SINE Alu 123 300 -12 1224 99 0 12 chr15 38558692 38558887 -62821634 + AluSg/x SINE Alu 122 314 0 218 263 0 40 chr15 38559165 38559241 -62821280 + GA-rich Low_complexity Low_complexity 1 73 0 685 354 28 0 chr15 38559255 38559436 -62821085 - MER91A DNA MER1_type -8 188 3 355 235 51 51 chr15 38559955 38560053 -62820468 + MER5A DNA MER1_type 46 143 -46 192 152 0 0 chr15 38562371 38562404 -62818117 + (TAA)n Simple_repeat Simple_repeat 2 34 0 485 280 77 72 chr15 38563309 38563800 -62816721 + L1MEd LINE L1 563 1050 -5079 2251 112 0 13 chr15 38563800 38564113 -62816408 + AluSg SINE Alu 1 309 -1 485 280 77 72 chr15 38564113 38564540 -62815981 + L1MEd LINE L1 1050 1461 -4668 2105 131 6 16 chr15 38564540 38564854 -62815667 + AluSx SINE Alu 1 311 -1 485 280 77 72 chr15 38564854 38565044 -62815477 + L1MEd LINE L1 1461 1649 -4480 2058 127 10 7 chr15 38565115 38565415 -62815106 + AluSx SINE Alu 1 301 -11 418 226 0 0 chr15 38565435 38565519 -62815002 - AluS SINE Alu -7 303 220 255 188 0 52 chr15 38565761 38565857 -62814664 + GA-rich Low_complexity Low_complexity 5 95 0 274 321 25 0 chr15 38565857 38565938 -62814583 + G-rich Low_complexity Low_complexity 1 83 0 1611 134 4 41 chr15 38565949 38566217 -62814304 - AluJb SINE Alu -52 260 3 364 283 45 70 chr15 38566268 38566512 -62814009 + L1MEd LINE L1 1847 2084 -4226 2112 124 7 0 chr15 38566570 38566860 -62813661 + AluSx SINE Alu 1 292 -20 336 275 85 48 chr15 38566870 38567186 -62813335 + L1MEd LINE L1 2118 2445 -3684 283 214 101 0 chr15 38567183 38567272 -62813249 + L1MEd LINE L1 2866 2963 -3166 * 1291 248 15 18 chr15 38567281 38567677 -62812844 - L1M4 LINE L1 -3014 3132 2738 227 129 0 0 chr15 38567678 38567709 -62812812 + LTR16A1 LTR ERVL 427 457 0 2277 104 0 0 chr15 38567970 38568258 -62812263 - AluSx SINE Alu -24 288 1 1851 153 41 10 chr15 38568990 38569317 -62811204 + MLT1A1 LTR MaLR 1 403 -29 2374 112 0 0 chr15 38569666 38569978 -62810543 + AluSx SINE Alu 1 312 0 2379 87 0 0 chr15 38570165 38570463 -62810058 - AluSq SINE Alu -14 299 2 1557 193 28 8 chr15 38570509 38570914 -62809607 - MER65C LTR ERV1 0 461 1 2279 112 0 3 chr15 38571002 38571307 -62809214 - AluSx SINE Alu -8 304 1 24 0 0 0 chr15 38571627 38571651 -62808870 + AT_rich Low_complexity Low_complexity 1 24 0 192 77 0 0 chr15 38572007 38572033 -62808488 + (A)n Simple_repeat Simple_repeat 1 26 0 765 244 85 10 chr15 38572974 38573175 -62807346 + MER58A DNA MER1_type 9 224 0 229 128 136 32 chr15 38573317 38573393 -62807128 - MER58 DNA MER1_type 0 2420 131 819 225 58 0 chr15 38573395 38573586 -62806935 + L1MC4a LINE L1 7148 7349 -459 767 298 103 39 chr15 38573578 38573704 -62806817 - L1M4 LINE L1 -3129 3017 2901 * 2107 163 9 11 chr15 38573704 38574053 -62806468 - MER7A DNA MER2_type 0 346 1 767 298 103 39 chr15 38574053 38574776 -62805745 - L1M4 LINE L1 -3245 2901 2113 751 189 43 188 chr15 38574795 38575338 -62805183 - L1MA8 LINE L1 -23 6268 5814 2125 139 0 0 chr15 38575338 38575647 -62804874 + AluSx SINE Alu 1 309 -3 751 189 43 188 chr15 38575647 38575700 -62804821 - L1MA8 LINE L1 -477 5814 5755 207 0 0 0 chr15 38575741 38575764 -62804757 + (CA)n Simple_repeat Simple_repeat 2 24 0 587 208 0 0 chr15 38575767 38575868 -62804653 - L1MA8 LINE L1 -533 5779 5679 1054 185 23 23 chr15 38575875 38576091 -62804430 + L1 LINE L1 4848 5063 -1083 2032 153 0 3 chr15 38576164 38576472 -62804049 - AluJb SINE Alu -5 307 1 2007 128 0 45 chr15 38576586 38576763 -62803758 - AluSg SINE Alu -12 298 139 2303 85 10 13 chr15 38576763 38577070 -62803451 - AluY SINE Alu -5 306 1 2007 128 0 45 chr15 38577070 38577204 -62803317 - AluSg SINE Alu -171 139 1 301 274 33 104 chr15 38577241 38577453 -62803068 - HAL1b LINE L1 -1150 198 2 717 186 0 125 chr15 38577538 38577719 -62802802 + LTR41 LTR ERVL 550 693 -80 1193 121 24 48 chr15 38577719 38577746 -62802775 + L1MA4 LINE L1 6092 6118 -182 2082 114 17 10 chr15 38577746 38578043 -62802478 + AluSx SINE Alu 1 299 -13 1193 121 24 48 chr15 38578043 38578221 -62802300 + L1MA4 LINE L1 6118 6292 -8 717 186 0 125 chr15 38578221 38578287 -62802234 + LTR41 LTR ERVL 693 766 -7 23 0 0 0 chr15 38578453 38578476 -62802045 + AT_rich Low_complexity Low_complexity 1 23 0 242 305 136 40 chr15 38578881 38579005 -62801516 + MIR3 SINE MIR 20 155 -53 473 294 82 6 chr15 38579011 38579181 -62801340 - MER5A DNA MER1_type 0 189 7 1034 185 49 0 chr15 38579289 38579451 -62801070 + FAM SINE Alu 1 170 -5 2033 114 45 0 chr15 38579454 38579744 -62800777 + AluSq SINE Alu 1 303 -10 756 162 9 0 chr15 38579821 38579932 -62800589 - FRAM SINE Alu -30 146 35 183 189 0 0 chr15 38579981 38580034 -62800487 + A-rich Low_complexity Low_complexity 1 53 0 259 219 288 0 chr15 38580880 38580953 -62799568 + L1MC4 LINE L1 7797 7890 -152 330 157 29 5 chr15 38581394 38581482 -62799039 - L1MC5 LINE L1 -946 6839 6743 243 309 155 72 chr15 38581483 38581530 -62798991 - L2 LINE L2 -568 2746 2704 1616 123 0 0 chr15 38581530 38581750 -62798771 + AluSg/x SINE Alu 82 301 -9 243 309 155 72 chr15 38581750 38581883 -62798638 - L2 LINE L2 -610 2704 2551 754 223 82 98 chr15 38581937 38582008 -62798513 - L2 LINE L2 -1041 2273 2202 2033 122 14 3 chr15 38582008 38582296 -62798225 + AluSx SINE Alu 1 291 -21 754 223 82 98 chr15 38582296 38582529 -62797992 - L2 LINE L2 -1112 2202 1974 214 234 31 16 chr15 38583653 38583717 -62796804 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 2340 104 0 0 chr15 38583763 38584070 -62796451 - AluSx SINE Alu -5 307 1 1099 159 96 23 chr15 38584801 38584976 -62795545 + MER46A DNA MER2_type 1 197 -2534 2248 93 0 3 chr15 38584976 38585266 -62795255 + AluY SINE Alu 3 291 -20 1099 159 96 23 chr15 38585266 38585310 -62795211 + MER46A DNA MER2_type 197 236 0 2212 111 3 10 chr15 38585316 38585622 -62794899 - AluSx SINE Alu -8 304 1 1339 166 0 9 chr15 38585786 38586009 -62794512 + AluJb SINE Alu 86 306 -6 254 262 97 10 chr15 38586018 38586121 -62794400 + L1ME4a LINE L1 6008 6119 -2 207 0 0 0 chr15 38588457 38588480 -62792041 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2299 132 11 17 chr15 38588526 38588609 -62791912 - MER7A DNA MER2_type -2693 345 263 3594 60 25 9 chr15 38588609 38589046 -62791475 + MLT2A1 LTR ERVL 1 444 0 2299 132 11 17 chr15 38589046 38589311 -62791210 - MER7A DNA MER2_type -2775 263 1 1750 152 64 0 chr15 38589635 38589918 -62790603 + AluSx SINE Alu 1 301 -11 23 33 0 0 chr15 38589997 38590027 -62790494 + AT_rich Low_complexity Low_complexity 1 30 0 2220 108 14 0 chr15 38590049 38590344 -62790177 + AluSq SINE Alu 1 299 -14 279 259 170 12 chr15 38590344 38590481 -62790040 - MIR SINE MIR -61 147 16 316 228 89 20 chr15 38590998 38591099 -62789422 - L2 LINE L2 -48 3265 3158 193 330 100 0 chr15 38591109 38591209 -62789312 - L2 LINE L2 -33 3280 3171 199 302 205 39 chr15 38591273 38591478 -62789043 - L2 LINE L2 -215 3057 2819 442 251 55 18 chr15 38591545 38591708 -62788813 + MLT1J2 LTR MaLR 43 211 -239 2176 122 3 3 chr15 38591868 38592171 -62788350 + AluSx SINE Alu 1 303 -9 664 318 111 46 chr15 38592210 38592623 -62787898 + L2 LINE L2 2605 3038 -234 1579 67 10 0 chr15 38592626 38592821 -62787700 - MER30 DNA MER1_type -33 197 1 198 313 0 0 chr15 38592824 38592872 -62787649 + L2 LINE L2 3020 3067 -246 1470 175 16 91 chr15 38593290 38593623 -62786898 - AluJb SINE Alu 0 310 1 1341 203 21 28 chr15 38594453 38594743 -62785778 + AluJb SINE Alu 1 288 -24 21 0 0 0 chr15 38596867 38596888 -62783633 + AT_rich Low_complexity Low_complexity 1 21 0 1869 171 0 11 chr15 38596889 38597176 -62783345 - AluJb SINE Alu -24 288 5 26 50 0 0 chr15 38597785 38597825 -62782696 + AT_rich Low_complexity Low_complexity 1 40 0 1050 286 85 66 chr15 38598064 38599033 -62781488 + L1MEd LINE L1 268 1254 -4865 336 280 72 88 chr15 38599044 38599126 -62781395 + HAL1 LINE L1 1379 1461 -1046 1900 175 7 0 chr15 38599126 38599429 -62781092 + AluJb SINE Alu 1 305 -7 336 280 72 88 chr15 38599429 38599449 -62781072 + HAL1 LINE L1 1461 1480 -1027 1972 124 0 42 chr15 38599449 38599756 -62780765 + AluSx SINE Alu 1 294 -18 336 280 72 88 chr15 38599756 38599845 -62780676 + HAL1 LINE L1 1480 1568 -939 1553 113 0 5 chr15 38599901 38600122 -62780399 - AluSq SINE Alu -7 306 87 1703 199 7 0 chr15 38600183 38600469 -62780052 + AluJo SINE Alu 1 288 -24 512 133 8 0 chr15 38601745 38601865 -62778656 + (TA)n Simple_repeat Simple_repeat 2 122 0 438 114 0 0 chr15 38601935 38602014 -62778507 + (TA)n Simple_repeat Simple_repeat 2 80 0 1886 136 0 0 chr15 38602014 38602264 -62778257 - AluSg SINE Alu -23 287 38 1906 116 4 4 chr15 38602559 38602810 -62777711 + AluSg SINE Alu 35 288 -22 186 43 0 0 chr15 38602810 38602833 -62777688 + (TA)n Simple_repeat Simple_repeat 1 23 0 1906 116 4 4 chr15 38602833 38602857 -62777664 + AluSg SINE Alu 287 310 0 249 237 17 17 chr15 38603574 38603633 -62776888 + L2 LINE L2 2759 2817 -497 491 257 52 64 chr15 38603704 38603953 -62776568 + L2 LINE L2 2938 3183 -130 1013 164 0 13 chr15 38603971 38604130 -62776391 - FRAM SINE Alu -23 153 1 304 266 57 32 chr15 38604178 38604302 -62776219 - MIR SINE MIR -89 173 47 2403 66 0 3 chr15 38604324 38604627 -62775894 + AluY SINE Alu 1 302 -9 344 332 84 0 chr15 38604769 38604968 -62775553 - L1M4 LINE L1 -2841 3305 3073 575 257 9 26 chr15 38605069 38605512 -62775009 + GA-rich Low_complexity Low_complexity 1 435 0 208 135 0 0 chr15 38605532 38605569 -62774952 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 238 136 0 0 chr15 38605725 38605769 -62774752 + L1ME4a LINE L1 6074 6117 -4 1155 64 7 0 chr15 38605796 38605936 -62774585 + AluSc SINE Alu 1 141 -168 234 57 0 0 chr15 38605937 38605972 -62774549 + Alu SINE Alu 262 296 -5 1301 232 25 71 chr15 38607059 38607327 -62773194 + L1MC4a LINE L1 5568 5798 -2010 1276 168 6 123 chr15 38607327 38607667 -62772854 + AluJb SINE Alu 1 300 -12 1301 232 25 71 chr15 38607667 38607958 -62772563 + L1MC4a LINE L1 5798 6101 -1707 913 156 75 10 chr15 38608012 38608211 -62772310 - L1ME1 LINE L1 -6 6160 5949 * 1090 187 25 22 chr15 38608208 38608288 -62772233 - L1ME1 LINE L1 -662 5504 5426 2435 84 3 3 chr15 38608288 38608598 -62771923 - AluY SINE Alu -1 310 1 1090 187 25 22 chr15 38608598 38608885 -62771636 - L1ME1 LINE L1 -740 5426 5149 1114 81 81 11 chr15 38610271 38610457 -62770064 - MER30 DNA MER1_type -31 199 1 * 2303 146 17 15 chr15 38610457 38610866 -62769655 - MSTB1 LTR MaLR -22 410 1 745 207 72 15 chr15 38610868 38611130 -62769391 + L1MD3 LINE L1 6091 7983 -1 1124 185 19 0 chr15 38611271 38611487 -62769034 + L1PA13 LINE L1 5938 6157 -6 185 0 40 0 chr15 38611535 38611560 -62768961 + (TAA)n Simple_repeat Simple_repeat 2 27 0 739 221 21 14 chr15 38611573 38611718 -62768803 + FRAM SINE Alu 1 146 -30 1941 126 0 14 chr15 38612039 38612350 -62768171 + AluSx SINE Alu 4 310 0 680 195 0 0 chr15 38612350 38612478 -62768043 - MER3 DNA MER1_type -81 128 1 48 0 0 0 chr15 38612847 38612895 -62767626 + AT_rich Low_complexity Low_complexity 1 48 0 2218 105 0 30 chr15 38613817 38614122 -62766399 + AluSg SINE Alu 1 296 -14 959 173 6 0 chr15 38614918 38615080 -62765441 - FAM SINE Alu -11 164 2 2292 87 3 7 chr15 38615574 38615872 -62764649 - AluSq SINE Alu -16 297 1 50 42 0 0 chr15 38616031 38616102 -62764419 + AT_rich Low_complexity Low_complexity 1 71 0 2240 96 0 0 chr15 38616109 38616400 -62764121 + AluY SINE Alu 1 291 -20 279 79 0 0 chr15 38616400 38616438 -62764083 + (TG)n Simple_repeat Simple_repeat 1 38 0 291 184 115 0 chr15 38616510 38616597 -62763924 + MIR SINE MIR 96 192 -70 663 163 82 22 chr15 38616611 38616746 -62763775 - FLAM_C SINE Alu 0 143 1 237 344 0 0 chr15 38616747 38616811 -62763710 + MIR SINE MIR 199 262 0 358 329 150 0 chr15 38616882 38617049 -62763472 - MIR SINE MIR -51 211 20 26 82 0 0 chr15 38617705 38617766 -62762755 + AT_rich Low_complexity Low_complexity 1 61 0 1304 176 20 8 chr15 38617963 38618213 -62762308 + Tigger7 DNA MER2_type 12 264 -2223 425 190 13 0 chr15 38618217 38618296 -62762225 + Tigger7 DNA MER2_type 2408 2487 0 1389 96 5 5 chr15 38618384 38618592 -62761929 + L1PA14 LINE L1 5944 6151 -10 198 0 0 0 chr15 38618633 38618655 -62761866 + (A)n Simple_repeat Simple_repeat 1 22 0 448 171 15 141 chr15 38618767 38618966 -62761555 - L1MC5 LINE L1 -58 7903 7730 1680 167 31 24 chr15 38618976 38619113 -62761408 + AluJb SINE Alu 1 136 -176 2168 91 0 14 chr15 38619113 38619428 -62761093 + AluSc SINE Alu 1 311 0 1680 167 31 24 chr15 38619428 38619582 -62760939 + AluJb SINE Alu 136 295 -17 1185 222 44 103 chr15 38619651 38620053 -62760468 + L1MC5 LINE L1 6558 6913 -1048 1589 131 0 0 chr15 38620053 38620274 -62760247 + AluSg/x SINE Alu 72 292 -18 1185 222 44 103 chr15 38620274 38620566 -62759955 + L1MC5 LINE L1 6913 7221 -740 1242 202 112 78 chr15 38620581 38621337 -62759184 + L1MC5 LINE L1 7238 7925 -36 304 300 9 27 chr15 38622255 38622365 -62758156 + MIR SINE MIR 94 201 -61 2218 104 7 0 chr15 38622463 38622761 -62757760 + AluSx SINE Alu 1 300 -12 2244 121 3 3 chr15 38622761 38623067 -62757454 + AluSx SINE Alu 1 306 -6 2165 96 3 0 chr15 38623312 38623617 -62756904 + AluSx SINE Alu 2 307 0 303 28 0 0 chr15 38623739 38623775 -62756746 + (TG)n Simple_repeat Simple_repeat 2 37 0 2088 137 0 0 chr15 38623919 38624211 -62756310 + AluSx SINE Alu 1 292 -20 5198 129 1 2 chr15 38624322 38625148 -62755373 - L1PA15 LINE L1 0 6165 5341 959 219 31 46 chr15 38625152 38625412 -62755109 + MSTD LTR MaLR 141 396 0 207 236 18 0 chr15 38626017 38626072 -62754449 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 204 313 0 0 chr15 38626422 38626470 -62754051 - MER5B DNA MER1_type -1 177 130 2022 133 0 13 chr15 38626596 38626896 -62753625 - AluJb SINE Alu -16 296 1 839 141 15 7 chr15 38627446 38627581 -62752940 - AluJo SINE Alu -176 136 1 821 146 8 8 chr15 38627991 38628121 -62752400 + FLAM_A SINE Alu 1 130 -3 1250 187 90 162 chr15 38628503 38628864 -62751657 + LTR8A LTR ERV1 34 315 -412 2363 95 0 0 chr15 38628864 38629168 -62751353 + AluSg SINE Alu 1 304 -6 1250 187 90 162 chr15 38629168 38629554 -62750967 + LTR8A LTR ERV1 315 727 0 1827 160 18 0 chr15 38629666 38629947 -62750574 + AluJb SINE Alu 1 286 -26 517 274 240 0 chr15 38629994 38630173 -62750348 - MIR SINE MIR -32 230 9 313 265 162 0 chr15 38630275 38630392 -62750129 - L2 LINE L2 -31 3282 3147 1627 151 16 69 chr15 38630672 38630770 -62749751 + MER2 DNA MER2_type 1 103 -242 1755 108 115 11 chr15 38630770 38631048 -62749473 + AluSg1 SINE Alu 2 308 -1 1627 151 16 69 chr15 38631048 38631094 -62749427 + MER2 DNA MER2_type 103 150 -195 1748 171 67 6 chr15 38631094 38631421 -62749100 - MER7A DNA MER2_type 0 346 2 1627 151 16 69 chr15 38631421 38631566 -62748955 + MER2 DNA MER2_type 150 271 -74 2073 123 36 0 chr15 38631566 38631867 -62748654 - AluSx SINE Alu 0 312 1 1627 151 16 69 chr15 38631867 38631939 -62748582 + MER2 DNA MER2_type 271 345 0 1706 207 127 71 chr15 38631955 38632521 -62748000 + MER21B LTR ERV1 5 602 -261 1972 215 66 11 chr15 38632521 38633226 -62747295 - L1ME LINE L1 -700 5860 5122 812 234 34 24 chr15 38633231 38633440 -62747081 - AluJo SINE Alu -5 307 97 447 151 173 7 chr15 38633441 38633580 -62746941 - L1MA8 LINE L1 -4 6287 6126 1800 193 57 39 chr15 38633598 38633879 -62746642 - L1ME LINE L1 -1433 5107 4832 2398 84 3 0 chr15 38633879 38634175 -62746346 - AluSp SINE Alu -16 297 1 1800 193 57 39 chr15 38634175 38634458 -62746063 - L1ME LINE L1 -1708 4832 4533 1578 233 86 10 chr15 38634467 38635096 -62745425 - L1MDa LINE L1 -4992 1548 916 458 358 22 19 chr15 38635634 38635950 -62744571 - L1MDa LINE L1 -6203 337 21 23 0 0 0 chr15 38636020 38636043 -62744478 + AT_rich Low_complexity Low_complexity 1 23 0 2307 78 0 69 chr15 38636329 38636662 -62743859 + AluY SINE Alu 1 310 -1 191 316 59 46 chr15 38636724 38636876 -62743645 - L2 LINE L2 -479 2835 2682 305 237 11 54 chr15 38637002 38637095 -62743426 - L1MC4 LINE L1 -1340 6702 6614 2201 122 3 0 chr15 38637458 38637754 -62742767 - AluSx SINE Alu -15 297 1 24 0 0 0 chr15 38638865 38638889 -62741632 + AT_rich Low_complexity Low_complexity 1 24 0 1088 127 0 0 chr15 38639135 38639293 -62741228 + AluSg/x SINE Alu 152 309 -3 1830 179 0 10 chr15 38639316 38639624 -62740897 - AluJo SINE Alu -7 305 1 942 179 53 39 chr15 38639766 38639973 -62740548 + MER6B DNA MER2_type 1 210 0 869 130 0 8 chr15 38640459 38640590 -62739931 - AluSg/x SINE Alu -9 301 172 902 231 36 100 chr15 38640695 38641052 -62739469 + L1MC5 LINE L1 6668 6976 -985 2201 54 18 4 chr15 38641052 38641367 -62739154 - AluY SINE Alu 0 319 1 902 231 36 100 chr15 38641367 38641589 -62738932 + L1MC5 LINE L1 6976 7211 -750 594 269 40 37 chr15 38641614 38641963 -62738558 + L1MC5 LINE L1 7315 7664 -297 405 180 79 34 chr15 38642008 38642097 -62738424 + FLAM_C SINE Alu 35 127 -16 980 118 56 36 chr15 38642125 38642166 -62738355 + L1MC2 LINE L1 6129 6168 -176 2135 131 3 0 chr15 38642166 38642463 -62738058 + AluSx SINE Alu 2 299 -13 980 118 56 36 chr15 38642463 38642616 -62737905 + L1MC2 LINE L1 6168 6327 -17 1873 177 0 13 chr15 38642619 38642924 -62737597 + AluJo SINE Alu 1 301 -11 1811 141 50 0 chr15 38643186 38643463 -62737058 + AluSx SINE Alu 1 291 -21 234 0 0 0 chr15 38643468 38643494 -62737027 + (CAA)n Simple_repeat Simple_repeat 2 27 0 348 197 89 94 chr15 38643711 38643924 -62736597 + L1MC5 LINE L1 7715 7926 -35 * 6020 166 43 78 chr15 38643916 38644494 -62736027 + L1MC3 LINE L1 3 600 -5826 1861 158 0 23 chr15 38644494 38644797 -62735724 - AluJb SINE Alu -16 296 1 6020 166 43 78 chr15 38644797 38645756 -62734765 + L1MC3 LINE L1 600 1486 -4940 263 78 0 109 chr15 38645762 38645826 -62734695 + L1MCa LINE L1 1459 1515 -4911 180 0 0 0 chr15 38645826 38645846 -62734675 + (CAA)n Simple_repeat Simple_repeat 2 21 0 507 182 11 0 chr15 38645851 38645939 -62734582 + AluJo SINE Alu 1 89 -223 323 157 129 0 chr15 38645946 38646016 -62734505 + AluJo SINE Alu 64 142 -160 1912 95 60 73 chr15 38646019 38646334 -62734187 - AluSq SINE Alu -2 311 1 9747 208 17 25 chr15 38646345 38647992 -62732529 + L1 LINE L1 2335 3955 -2191 2204 110 3 0 chr15 38647992 38648291 -62732230 + AluSp SINE Alu 1 300 -13 9747 208 17 25 chr15 38648291 38649660 -62730861 + L1 LINE L1 3955 5334 -812 3351 173 79 31 chr15 38649645 38649688 -62730833 + L1MC3 LINE L1 1560 1599 -4827 * 2128 126 3 0 chr15 38649688 38649989 -62730532 + AluSp SINE Alu 1 302 -11 3351 173 79 31 chr15 38649989 38650552 -62729969 + L1MC3 LINE L1 1599 2134 -4292 1565 167 25 65 chr15 38650552 38650876 -62729645 + AluSx SINE Alu 1 311 -1 3351 173 79 31 chr15 38650876 38650924 -62729597 + L1MC3 LINE L1 2134 2178 -4248 1653 212 0 6 chr15 38650924 38651235 -62729286 + AluJo SINE Alu 1 309 -3 3351 173 79 31 chr15 38651235 38651543 -62728978 + L1MC3 LINE L1 2178 2470 -3956 627 233 25 0 chr15 38651543 38651688 -62728833 + FLAM_A SINE Alu 1 148 0 3351 173 79 31 chr15 38651688 38652348 -62728173 + L1MC3 LINE L1 2470 3336 -3090 2665 42 0 6 chr15 38652348 38652661 -62727860 + AluY SINE Alu 1 311 0 3351 173 79 31 chr15 38652661 38652806 -62727715 + L1MC3 LINE L1 3336 3473 -2953 * 3502 174 111 1 chr15 38652802 38653550 -62726971 + L1MC3 LINE L1 5501 5683 -743 320 152 0 0 chr15 38653555 38653601 -62726920 + Tigger5 DNA MER2_type 2 47 -2276 * 479 114 29 0 chr15 38653578 38653648 -62726873 + Tigger5 DNA MER2_type 2251 2322 -1 1611 127 45 15 chr15 38653656 38653923 -62726598 + L1MC1 LINE L1 6059 6333 0 1751 146 7 21 chr15 38653960 38654287 -62726234 + AluJo SINE Alu 1 323 0 1933 150 0 3 chr15 38654481 38654774 -62725747 - AluSx SINE Alu -20 292 1 1990 144 13 3 chr15 38655280 38655586 -62724935 + AluSx SINE Alu 1 309 -3 2316 108 0 0 chr15 38655966 38656262 -62724259 + AluSc SINE Alu 1 296 -13 26 88 0 0 chr15 38658213 38658281 -62722240 + AT_rich Low_complexity Low_complexity 1 68 0 2157 121 0 7 chr15 38658535 38658840 -62721681 + AluSx SINE Alu 1 303 -9 2301 109 0 3 chr15 38659689 38660002 -62720519 - AluSx SINE Alu 0 312 1 2330 85 7 0 chr15 38660091 38660384 -62720137 + AluSg SINE Alu 1 295 -15 666 249 166 116 chr15 38660737 38661010 -62719511 + MLT1H1 LTR MaLR 1 259 -296 2393 91 3 0 chr15 38661010 38661317 -62719204 + AluSx SINE Alu 1 308 -4 666 249 166 116 chr15 38661317 38661610 -62718911 + MLT1H1 LTR MaLR 259 555 0 23 0 0 0 chr15 38662099 38662122 -62718399 + AT_rich Low_complexity Low_complexity 1 23 0 2424 192 73 86 chr15 38662190 38663076 -62717445 + L1MC5 LINE L1 6823 7697 -264 755 224 107 15 chr15 38663152 38663415 -62717106 + L1MC5 LINE L1 7645 7931 -30 1653 60 5 41 chr15 38663449 38663667 -62716854 - AluY SINE Alu -101 210 1 324 0 0 0 chr15 38663878 38663914 -62716607 + (CA)n Simple_repeat Simple_repeat 2 37 0 527 277 105 36 chr15 38664583 38664780 -62715741 + L1MC4a LINE L1 5816 5998 -1810 979 213 36 41 chr15 38664780 38665001 -62715520 - MER58A DNA MER1_type 0 224 5 527 277 105 36 chr15 38665001 38665024 -62715497 + L1MC4a LINE L1 5998 6018 -1790 1807 196 0 0 chr15 38665024 38665336 -62715185 + AluJo SINE Alu 1 312 0 527 277 105 36 chr15 38665336 38665446 -62715075 + L1MC4a LINE L1 6018 6170 -1638 1776 191 0 22 chr15 38665689 38666003 -62714518 - AluJo SINE Alu -5 307 1 233 191 0 0 chr15 38666183 38666230 -62714291 + L1PB1 LINE L1 6105 6151 0 21 0 0 0 chr15 38666230 38666251 -62714270 + AT_rich Low_complexity Low_complexity 1 21 0 2211 120 0 3 chr15 38666309 38666617 -62713904 + AluSx SINE Alu 1 307 -5 2985 241 92 59 chr15 38666629 38666901 -62713620 + L1MDa LINE L1 1001 1263 -5277 2376 91 3 0 chr15 38666901 38667198 -62713323 + AluSg SINE Alu 1 298 -12 2985 241 92 59 chr15 38667198 38667626 -62712895 + L1MDa LINE L1 1263 1676 -4864 1935 134 0 50 chr15 38667626 38667967 -62712554 + AluSx SINE Alu 1 326 0 2985 241 92 59 chr15 38667967 38668409 -62712112 + L1MDa LINE L1 1676 2102 -4438 2371 81 17 0 chr15 38668409 38668706 -62711815 + AluSp SINE Alu 1 302 -11 2985 241 92 59 chr15 38668706 38669561 -62710960 + L1MDa LINE L1 2102 3002 -3538 341 211 10 106 chr15 38669624 38669728 -62710793 + MER21B LTR ERV1 3 96 -767 905 207 88 23 chr15 38669843 38670060 -62710461 + MER21B LTR ERV1 100 330 -533 1397 185 115 61 chr15 38670068 38670495 -62710026 + LTR7 LTR ERV1 1 450 0 9123 197 46 16 chr15 38670495 38672980 -62707541 + HERVH LTR ERV1 1 2805 -4908 345 71 43 100 chr15 38673081 38673151 -62707370 + HERVH LTR ERV1 7648 7713 0 792 159 89 58 chr15 38673151 38673540 -62706981 + LTR7 LTR ERV1 1 443 -7 613 134 28 113 chr15 38673597 38673739 -62706782 + MER21B LTR ERV1 406 615 -316 1690 212 94 118 chr15 38673855 38674061 -62706460 + MER21B LTR ERV1 65 275 -588 2205 89 0 20 chr15 38674061 38674365 -62706156 - AluSx SINE Alu -14 298 1 1929 139 20 10 chr15 38674365 38674665 -62705856 - AluJo SINE Alu -8 304 1 1690 212 94 118 chr15 38674665 38675149 -62705372 + MER21B LTR ERV1 273 739 -124 588 218 60 87 chr15 38675165 38675431 -62705090 + L1MDa LINE L1 3008 3266 -3274 669 235 12 18 chr15 38675446 38675616 -62704905 + MER58A DNA MER1_type 45 213 -11 1984 155 7 0 chr15 38675616 38675920 -62704601 + AluJo SINE Alu 1 306 -6 2321 106 3 3 chr15 38675920 38676231 -62704290 + AluSx SINE Alu 1 312 0 436 187 106 0 chr15 38676257 38676380 -62704141 + L1MDa LINE L1 3270 3405 -3135 1485 177 36 18 chr15 38676544 38676821 -62703700 + AluJo SINE Alu 1 282 -30 39 22 0 0 chr15 38676821 38676867 -62703654 + AT_rich Low_complexity Low_complexity 1 46 0 1803 255 79 14 chr15 38676876 38677283 -62703238 + L1MDa LINE L1 3437 3816 -2724 2628 118 14 11 chr15 38677283 38677646 -62702875 + THE1B LTR MaLR 1 364 0 1803 255 79 14 chr15 38677646 38677803 -62702718 + L1MDa LINE L1 3816 3961 -2579 1762 179 3 7 chr15 38677803 38678099 -62702422 + AluJb SINE Alu 5 299 -13 1803 255 79 14 chr15 38678099 38678420 -62702101 + L1MDa LINE L1 3961 4412 -2128 616 249 72 9 chr15 38678439 38678660 -62701861 + L1MDa LINE L1 4973 5207 -1333 1100 153 6 6 chr15 38678670 38678846 -62701675 + L1PA15 LINE L1 5990 6165 0 2486 74 0 0 chr15 38678869 38679166 -62701355 - AluY SINE Alu -14 297 1 934 130 14 0 chr15 38679178 38679324 -62701197 - L1MB7 LINE L1 -105 6079 5932 663 156 75 96 chr15 38679321 38679373 -62701148 + L1MDa LINE L1 5240 5292 -1248 * 2109 105 7 11 chr15 38679373 38679689 -62700832 + AluSx SINE Alu 1 315 0 663 156 75 96 chr15 38679689 38679834 -62700687 + L1MDa LINE L1 5292 5434 -1106 1814 146 3 29 chr15 38679834 38680150 -62700371 + AluJo SINE Alu 1 308 -4 351 184 257 33 chr15 38680159 38680190 -62700331 + Charlie1 DNA MER1_type 2575 2598 -163 2221 92 6 29 chr15 38680190 38680506 -62700015 - AluSg SINE Alu -1 309 1 351 184 257 33 chr15 38680506 38680626 -62699895 + Charlie1 DNA MER1_type 2598 2760 -1 275 295 13 0 chr15 38681281 38681359 -62699162 + MER117 DNA MER1_type 54 132 -65 231 224 0 35 chr15 38681384 38681442 -62699079 - L2 LINE L2 0 3313 3258 462 242 30 15 chr15 38681446 38681573 -62698948 + HAL1 LINE L1 100 229 -2274 378 0 0 0 chr15 38681573 38681615 -62698906 + (CA)n Simple_repeat Simple_repeat 2 43 0 1122 184 0 5 chr15 38681659 38681849 -62698672 + AluJb SINE Alu 3 191 -121 1364 153 160 8 chr15 38682022 38682290 -62698231 + AluSg1 SINE Alu 1 309 0 242 211 0 0 chr15 38682295 38682347 -62698174 + HAL1 LINE L1 2124 2175 -332 811 289 66 29 chr15 38682364 38682714 -62697807 + HAL1 LINE L1 2145 2507 0 1654 164 3 21 chr15 38682760 38683047 -62697474 - AluJb SINE Alu -30 282 1 2137 86 0 47 chr15 38683078 38683208 -62697313 + AluSq SINE Alu 16 150 -163 2255 78 10 7 chr15 38683208 38683501 -62697020 + AluSc SINE Alu 1 294 -15 2137 86 0 47 chr15 38683501 38683671 -62696850 + AluSq SINE Alu 150 302 -11 331 98 0 0 chr15 38683672 38683740 -62696781 + Alu SINE Alu 245 312 0 2226 94 10 3 chr15 38683742 38684041 -62696480 - AluSq SINE Alu -12 301 1 248 234 138 56 chr15 38684060 38684186 -62696335 + L1ME4a LINE L1 5872 5986 -135 1788 133 10 40 chr15 38684186 38684486 -62696035 + AluSx SINE Alu 1 291 -21 248 234 138 56 chr15 38684486 38684590 -62695931 + L1ME4a LINE L1 5986 6121 0 2063 197 16 52 chr15 38684613 38684828 -62695693 + L1MB3 LINE L1 4832 5053 -1130 2391 84 0 3 chr15 38684828 38685124 -62695397 + AluSx SINE Alu 1 295 -17 2063 197 16 52 chr15 38685124 38685194 -62695327 + L1MB3 LINE L1 5053 5124 -1059 180 0 0 0 chr15 38685194 38685214 -62695307 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2063 197 16 52 chr15 38685214 38685250 -62695271 + L1MB3 LINE L1 5124 5160 -1023 987 115 8 0 chr15 38685250 38685380 -62695141 + FLAM_A SINE Alu 1 131 -2 2063 197 16 52 chr15 38685380 38685683 -62694838 + L1MB3 LINE L1 5160 5472 -711 2278 98 0 0 chr15 38685683 38685980 -62694541 + AluSx SINE Alu 1 297 -15 2212 90 3 27 chr15 38685989 38686288 -62694233 + AluSq SINE Alu 2 293 -20 2063 197 16 52 chr15 38686288 38686457 -62694064 + L1MB3 LINE L1 5480 5603 -580 1762 164 26 7 chr15 38686460 38686764 -62693757 + AluJb SINE Alu 1 310 -2 269 41 41 41 chr15 38686776 38686825 -62693696 - AluY SINE Alu -1 301 253 1845 186 31 0 chr15 38686854 38687204 -62693317 + L1MB3 LINE L1 5823 6183 0 1632 253 75 65 chr15 38687419 38688003 -62692518 + MLT1E LTR MaLR 3 592 -1 22 0 0 0 chr15 38688130 38688152 -62692369 + AT_rich Low_complexity Low_complexity 1 22 0 1945 154 0 7 chr15 38688624 38688923 -62691598 - AluJb SINE Alu -15 297 1 1554 189 60 0 chr15 38689025 38689306 -62691215 - AluJb SINE Alu -14 298 1 386 236 122 54 chr15 38689505 38689653 -62690868 + MIR SINE MIR 91 248 -14 995 202 70 11 chr15 38689656 38689928 -62690593 + AluSp SINE Alu 1 288 -15 301 262 110 41 chr15 38690045 38690190 -62690331 + MIR SINE MIR 94 248 -14 2338 92 3 0 chr15 38690193 38690486 -62690035 + AluSp SINE Alu 1 294 -19 4453 121 28 40 chr15 38690779 38691189 -62689332 + L1MA4 LINE L1 4958 5371 -929 880 163 0 15 chr15 38691189 38691324 -62689197 + FLAM_C SINE Alu 1 133 0 4453 121 28 40 chr15 38691324 38691972 -62688549 + L1MA4 LINE L1 5371 6014 -286 375 196 43 0 chr15 38691979 38692071 -62688450 + L1MB3 LINE L1 6087 6182 -1 1619 174 10 49 chr15 38692078 38692383 -62688138 + AluJb SINE Alu 1 293 -19 1688 188 18 0 chr15 38692485 38692767 -62687754 + AluJo SINE Alu 6 292 -20 781 246 18 26 chr15 38692971 38693199 -62687322 + L1ME3A LINE L1 5565 5790 -380 761 161 244 0 chr15 38693221 38693389 -62687132 - MLT1D LTR MaLR -6 499 291 879 189 17 23 chr15 38693414 38693589 -62686932 - FAM SINE Alu -11 174 1 1382 198 10 54 chr15 38693591 38693905 -62686616 - MLT1D LTR MaLR -205 300 1 416 250 26 7 chr15 38693907 38694080 -62686441 + L1ME3A LINE L1 5801 5975 -189 555 176 69 29 chr15 38694174 38694303 -62686218 + FLAM_A SINE Alu 10 142 0 2339 95 6 16 chr15 38695050 38695365 -62685156 + AluSq SINE Alu 1 312 -1 519 207 76 138 chr15 38695489 38695607 -62684914 + MLT1H LTR MaLR 8 132 -417 813 187 0 0 chr15 38695607 38695730 -62684791 + FLAM_A SINE Alu 1 123 -10 519 207 76 138 chr15 38695730 38696066 -62684455 + MLT1H LTR MaLR 132 545 -4 1444 118 90 0 chr15 38696147 38696248 -62684273 + MER30 DNA MER1_type 1 92 -138 225 0 0 0 chr15 38696248 38696273 -62684248 + (CA)n Simple_repeat Simple_repeat 2 26 0 1444 118 90 0 chr15 38696273 38696382 -62684139 + MER30 DNA MER1_type 91 230 0 2221 85 0 39 chr15 38696711 38697016 -62683505 + AluSq SINE Alu 1 293 -20 2913 10 0 0 chr15 38697130 38697442 -62683079 + AluYb8 SINE Alu 1 312 -6 2531 48 3 0 chr15 38697644 38697936 -62682585 + AluY SINE Alu 1 293 -18 2310 102 0 3 chr15 38698268 38698562 -62681959 - AluSg SINE Alu -17 293 1 27 62 0 0 chr15 38698984 38699032 -62681489 + AT_rich Low_complexity Low_complexity 1 48 0 388 288 76 0 chr15 38699223 38699341 -62681180 + L2 LINE L2 3185 3311 -2 3290 144 39 17 chr15 38699354 38699890 -62680631 + MER44D DNA MER2_type 1 603 -2 1788 174 17 0 chr15 38699951 38700244 -62680277 + AluJo SINE Alu 1 298 -14 828 177 37 0 chr15 38700707 38700871 -62679650 - AluJb SINE Alu -5 307 138 276 173 0 0 chr15 38700971 38701023 -62679498 + Alu SINE Alu 257 308 0 2112 139 0 0 chr15 38701066 38701375 -62679146 - AluSc SINE Alu 0 309 1 190 313 80 54 chr15 38701644 38701756 -62678765 + MER5A DNA MER1_type 71 185 -4 1941 221 36 34 chr15 38701887 38702024 -62678497 - L1M4 LINE L1 -977 5169 5034 2446 73 0 0 chr15 38702024 38702326 -62678195 - AluY SINE Alu -9 302 1 1941 221 36 34 chr15 38702326 38702714 -62677807 - L1M4 LINE L1 -1112 5034 4643 204 175 25 0 chr15 38702716 38702756 -62677765 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1267 194 135 12 chr15 38702761 38703013 -62677508 - AluJo SINE Alu -18 284 2 273 156 31 47 chr15 38703014 38703078 -62677443 - L1M4 LINE L1 -1491 4655 4593 2058 79 12 0 chr15 38703078 38703332 -62677189 - AluSq SINE Alu -56 257 1 354 252 102 0 chr15 38703397 38703524 -62676997 - L1MC4a LINE L1 -1881 5927 5788 2153 155 3 23 chr15 38704265 38704614 -62675907 - MER2 DNA MER2_type -1 343 2 2523 69 3 0 chr15 38705982 38706285 -62674236 + AluSc SINE Alu 1 304 -5 2267 100 6 6 chr15 38707006 38707317 -62673204 - AluY SINE Alu 0 311 1 195 69 0 0 chr15 38707397 38707426 -62673095 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 1619 186 7 11 chr15 38707426 38707705 -62672816 - AluJo SINE Alu -32 280 3 2380 68 0 7 chr15 38708085 38708379 -62672142 - AluY SINE Alu -19 292 1 2267 65 0 71 chr15 38708598 38708920 -62671601 - AluSg SINE Alu -11 299 1 1102 289 179 22 chr15 38708946 38709061 -62671460 + L2 LINE L2 2346 2442 -871 2132 128 0 3 chr15 38709061 38709357 -62671164 - AluSx SINE Alu -17 295 1 1102 289 179 22 chr15 38709357 38710089 -62670432 + L2 LINE L2 2442 3311 -2 198 0 0 0 chr15 38710255 38710277 -62670244 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2089 121 0 0 chr15 38710280 38710562 -62669959 - AluSx SINE Alu -30 282 1 188 83 0 28 chr15 38710624 38710660 -62669861 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 11403 27 3 2 chr15 38710660 38712723 -62667798 - L1PA3 LINE L1 -24 6131 4066 1999 108 49 11 chr15 38712922 38713209 -62667312 - AluSx SINE Alu -10 302 5 2267 87 7 10 chr15 38713656 38713965 -62666556 + AluSq SINE Alu 4 311 -2 24 0 0 0 chr15 38714103 38714127 -62666394 + AT_rich Low_complexity Low_complexity 1 24 0 1813 127 38 4 chr15 38714260 38714527 -62665994 - AluSx SINE Alu -13 299 24 2374 86 0 10 chr15 38715188 38715490 -62665031 + AluSx SINE Alu 1 299 -13 742 307 113 35 chr15 38715899 38716435 -62664086 - L2 LINE L2 -55 3258 2684 2522 62 3 3 chr15 38716461 38716766 -62663755 - AluSp SINE Alu -6 307 3 1068 252 90 59 chr15 38718020 38718166 -62662355 + LTR33A LTR ERVL 33 173 -350 2302 101 0 0 chr15 38718166 38718464 -62662057 + AluSx SINE Alu 1 298 -14 1068 252 90 59 chr15 38718464 38718793 -62661728 + LTR33A LTR ERVL 173 523 0 220 253 0 40 chr15 38718799 38718874 -62661647 + A-rich Low_complexity Low_complexity 5 76 0 1845 121 59 38 chr15 38718909 38719198 -62661323 + AluSg SINE Alu 1 295 -15 552 101 0 0 chr15 38719223 38719292 -62661229 + AluS SINE Alu 1 69 -243 1904 116 0 63 chr15 38719658 38719961 -62660560 + AluSx SINE Alu 1 284 -28 1123 168 24 0 chr15 38719996 38720163 -62660358 + FAM SINE Alu 1 171 -4 426 277 106 67 chr15 38720169 38720914 -62659607 + L1ME4a LINE L1 5042 5752 -369 2527 57 0 3 chr15 38720914 38721214 -62659307 + AluY SINE Alu 1 299 -12 426 277 106 67 chr15 38721214 38721292 -62659229 + L1ME4a LINE L1 5752 5825 -296 2100 124 3 0 chr15 38721883 38722174 -62658347 - AluSx SINE Alu -20 292 1 9333 28 3 237 chr15 38722823 38724623 -62655898 + SVA Other Other 1 1378 -8 21 36 0 0 chr15 38725514 38725542 -62654979 + AT_rich Low_complexity Low_complexity 1 28 0 1830 142 0 0 chr15 38725552 38725820 -62654701 - AluSx SINE Alu -18 294 27 24 32 0 0 chr15 38726428 38726459 -62654062 + AT_rich Low_complexity Low_complexity 1 31 0 1705 119 4 0 chr15 38726521 38726748 -62653773 + AluSx SINE Alu 25 252 -60 268 215 47 9 chr15 38726941 38727048 -62653473 + (TA)n Simple_repeat Simple_repeat 1 111 0 898 145 0 43 chr15 38727423 38727561 -62652960 - FLAM_C SINE Alu 0 133 2 180 0 0 0 chr15 38727571 38727591 -62652930 + (TTA)n Simple_repeat Simple_repeat 3 22 0 6904 66 7 3 chr15 38727592 38728648 -62651873 - L1PA7 LINE L1 -36 6118 5060 5892 86 8 0 chr15 38728647 38729449 -62651072 + L1PA7 LINE L1 4252 5059 -1087 * 2089 128 27 0 chr15 38729756 38730052 -62650469 - AluSq SINE Alu -9 304 1 187 347 69 14 chr15 38730338 38730410 -62650111 - L3b LINE CR1 -24 1559 1484 192 310 97 18 chr15 38730416 38730529 -62649992 + MIR SINE MIR 61 182 -80 364 222 0 22 chr15 38730777 38730867 -62649654 - L1ME2 LINE L1 -1 6163 6076 5893 148 23 22 chr15 38730885 38731395 -62649126 - L1MC1 LINE L1 0 6333 5820 2248 121 0 6 chr15 38731395 38731708 -62648813 - AluSx SINE Alu -1 311 1 5893 148 23 22 chr15 38731708 38732207 -62648314 - L1MC1 LINE L1 -513 5820 5323 911 159 0 0 chr15 38732208 38732334 -62648187 - FLAM_C SINE Alu -6 127 2 1498 212 10 10 chr15 38732345 38732633 -62647888 - AluSx SINE Alu -13 289 2 1988 139 3 13 chr15 38732990 38733293 -62647228 - AluSx SINE Alu -12 300 1 25 0 0 0 chr15 38733527 38733552 -62646969 + AT_rich Low_complexity Low_complexity 1 25 0 225 0 0 0 chr15 38734728 38734753 -62645768 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1616 128 47 12 chr15 38734756 38735014 -62645507 - AluJo SINE Alu -30 282 16 594 186 17 17 chr15 38735024 38735142 -62645379 - MLT1F LTR MaLR -50 492 375 526 76 0 0 chr15 38737403 38737469 -62643052 + Alu SINE Alu 235 300 -12 1951 123 20 10 chr15 38737479 38737780 -62642741 + AluSq SINE Alu 1 304 -9 2038 111 35 3 chr15 38737833 38738121 -62642400 + AluSx SINE Alu 1 297 -15 842 158 8 15 chr15 38739537 38739670 -62640851 + FLAM_A SINE Alu 1 132 -1 2176 106 0 0 chr15 38739762 38740055 -62640466 + AluSx SINE Alu 1 293 -19 289 224 191 61 chr15 38740385 38740532 -62639989 - MIR SINE MIR -91 171 6 1890 148 30 10 chr15 38740999 38741302 -62639219 - AluJo SINE Alu -3 309 1 3357 193 40 9 chr15 38741361 38742014 -62638507 - L1MB5 LINE L1 0 6174 5502 514 271 136 66 chr15 38742036 38742267 -62638254 - L1M4c LINE L1 -6026 358 96 2162 108 0 33 chr15 38742267 38742573 -62637948 + AluSx SINE Alu 1 296 -16 514 271 136 66 chr15 38742573 38742673 -62637848 - L1M4c LINE L1 -6288 96 4 2205 104 0 0 chr15 38743702 38744006 -62636515 - AluSg1 SINE Alu 0 304 1 1721 171 14 10 chr15 38744024 38744316 -62636205 + AluSx SINE Alu 1 293 -19 2020 150 0 7 chr15 38744708 38745014 -62635507 + AluJb SINE Alu 1 304 -8 924 76 17 0 chr15 38745832 38745974 -62634547 + AluSg/x SINE Alu 164 307 0 23 33 0 0 chr15 38746941 38746971 -62633550 + AT_rich Low_complexity Low_complexity 1 30 0 1571 182 65 4 chr15 38746981 38747256 -62633265 + AluJo SINE Alu 1 292 -20 2048 124 0 10 chr15 38747370 38747669 -62632852 + AluSg SINE Alu 1 296 -14 2272 86 3 3 chr15 38748139 38748429 -62632092 + AluSq SINE Alu 4 293 -20 26 0 0 0 chr15 38748813 38748839 -62631682 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr15 38749910 38749939 -62630582 + AT_rich Low_complexity Low_complexity 1 29 0 333 0 0 0 chr15 38750086 38750123 -62630398 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1901 126 0 25 chr15 38750128 38750413 -62630108 - AluSq SINE Alu -35 278 1 672 231 8 0 chr15 38751618 38751739 -62628782 + FLAM_A SINE Alu 1 122 -11 2007 65 0 4 chr15 38752053 38752298 -62628223 + AluY SINE Alu 55 298 -13 238 319 30 52 chr15 38752350 38752485 -62628036 - L2 LINE L2 -241 3031 2900 1777 164 25 0 chr15 38752887 38753162 -62627359 + AluJb SINE Alu 1 282 -30 336 48 0 0 chr15 38753165 38753207 -62627314 + (TGGA)n Simple_repeat Simple_repeat 4 45 0 533 307 101 18 chr15 38753216 38753434 -62627087 - MIR SINE MIR -21 241 6 284 242 30 0 chr15 38753765 38753831 -62626690 - MIR SINE MIR -76 132 65 258 288 113 50 chr15 38753863 38753931 -62626590 - MIR SINE MIR 0 262 200 1891 148 0 24 chr15 38753931 38754229 -62626292 + AluSx SINE Alu 1 291 -21 258 288 113 50 chr15 38754229 38754400 -62626121 - MIR SINE MIR -62 200 8 1998 121 16 50 chr15 38754450 38754596 -62625925 + AluSx SINE Alu 1 150 -162 2419 97 0 0 chr15 38754596 38754896 -62625625 + AluSc SINE Alu 1 300 -9 1998 121 16 50 chr15 38754896 38755071 -62625450 + AluSx SINE Alu 150 311 -1 663 244 22 39 chr15 38756497 38756677 -62623844 - MER5B DNA MER1_type 0 178 2 1655 149 15 94 chr15 38757771 38758100 -62622421 + AluJo SINE Alu 1 303 -9 347 286 0 0 chr15 38758198 38758282 -62622239 + L1MB8 LINE L1 5582 5665 -2143 210 229 21 0 chr15 38758396 38758444 -62622077 + (CCG)n Simple_repeat Simple_repeat 3 51 0 184 298 65 83 chr15 38759395 38759563 -62620958 - MIR3 SINE MIR -30 178 14 692 187 0 0 chr15 38760084 38760191 -62620330 + FLAM_C SINE Alu 2 108 -35 198 0 0 0 chr15 38760209 38760231 -62620290 + (CA)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr15 38760251 38760272 -62620249 + AT_rich Low_complexity Low_complexity 1 21 0 1890 122 6 110 chr15 38760272 38760607 -62619914 + AluJo SINE Alu 2 301 -1 1741 136 48 18 chr15 38760868 38761140 -62619381 + AluJo SINE Alu 3 282 -30 2670 220 9 24 chr15 38761151 38761701 -62618820 + MLT1F LTR MaLR 1 542 0 245 215 18 0 chr15 38762136 38762212 -62618309 + L1MB8 LINE L1 6105 6182 -2 2360 80 0 7 chr15 38762366 38762666 -62617855 - AluY SINE Alu -13 298 1 268 250 161 24 chr15 38762672 38762840 -62617681 - L2 LINE L2 -12 3301 3111 2180 122 0 0 chr15 38763041 38763336 -62617185 - AluSx SINE Alu -17 295 1 2292 113 0 0 chr15 38763340 38763640 -62616881 - AluSg SINE Alu -10 300 1 2298 90 0 10 chr15 38764045 38764344 -62616177 - AluSq SINE Alu -17 296 1 2325 96 0 0 chr15 38764700 38764993 -62615528 - AluSx SINE Alu -19 293 1 1145 229 25 25 chr15 38765443 38765723 -62614798 - AluJo SINE Alu -31 281 2 2024 94 33 33 chr15 38766092 38766391 -62614130 - AluSq SINE Alu -14 299 1 2612 225 53 57 chr15 38766658 38767745 -62612776 + L1ME2 LINE L1 4971 6163 -1 1781 156 26 13 chr15 38767747 38768055 -62612466 + AluJo SINE Alu 1 312 0 280 278 45 15 chr15 38768198 38768331 -62612190 + L1MC4 LINE L1 7904 8040 -2 1595 194 0 33 chr15 38768339 38768643 -62611878 + AluJo SINE Alu 12 305 -7 216 0 0 0 chr15 38768925 38768949 -62611572 + (TG)n Simple_repeat Simple_repeat 1 24 0 1523 182 47 0 chr15 38768963 38769238 -62611283 - AluJo SINE Alu -24 288 1 21 0 0 0 chr15 38769238 38769259 -62611262 + AT_rich Low_complexity Low_complexity 1 21 0 204 118 29 0 chr15 38770032 38770066 -62610455 + (TG)n Simple_repeat Simple_repeat 1 35 0 1366 172 75 18 chr15 38770846 38771125 -62609396 - AluJo SINE Alu -13 299 5 449 281 154 4 chr15 38771148 38771415 -62609106 - L1ME4a LINE L1 -23 6098 5792 537 237 30 23 chr15 38771421 38771552 -62608969 + MIR SINE MIR 2 133 -129 1488 239 90 69 chr15 38771555 38771620 -62608901 - L1MDb LINE L1 -4752 1788 1726 714 154 14 98 chr15 38771620 38771649 -62608872 - FLAM_A SINE Alu -171 131 101 2101 125 0 3 chr15 38771649 38771944 -62608577 + AluSx SINE Alu 1 294 -18 714 154 14 98 chr15 38771944 38772057 -62608464 - FLAM_A SINE Alu -201 101 1 1488 239 90 69 chr15 38772057 38772407 -62608114 - L1MDb LINE L1 -4814 1726 1385 1579 176 7 53 chr15 38772407 38772708 -62607813 - AluJo SINE Alu -25 287 1 1488 239 90 69 chr15 38772708 38773184 -62607337 - L1MDb LINE L1 -5155 1385 908 317 325 77 34 chr15 38773256 38773465 -62607056 - L1MDb LINE L1 -5611 919 702 390 281 51 67 chr15 38773724 38773977 -62606544 - L1MDb LINE L1 -6192 348 100 2197 106 0 13 chr15 38774022 38774324 -62606197 - AluSx SINE Alu -14 298 1 967 136 57 17 chr15 38774330 38774507 -62606014 + AluSg/x SINE Alu 110 293 -17 360 356 50 32 chr15 38774610 38774891 -62605630 - L1 LINE L1 -3135 3011 2726 889 165 0 0 chr15 38774922 38775055 -62605466 + FLAM_C SINE Alu 1 133 0 2498 57 0 29 chr15 38776034 38776350 -62604171 + AluY SINE Alu 1 307 -4 1747 161 55 0 chr15 38776971 38777262 -62603259 + AluJo SINE Alu 1 307 -5 3910 110 17 15 chr15 38777627 38778153 -62602368 + MER1A DNA MER1_type 1 527 0 761 187 75 43 chr15 38778337 38778524 -62601997 - MIR SINE MIR 0 262 70 2202 99 3 10 chr15 38778854 38779156 -62601365 + AluSg SINE Alu 1 300 -10 508 308 7 7 chr15 38779263 38779406 -62601115 + MIR SINE MIR 1 143 -119 6969 183 55 30 chr15 38779409 38780902 -62599619 - MER52A LTR ERV1 0 1755 17 454 246 55 9 chr15 38780902 38781012 -62599509 + MIR SINE MIR 148 262 0 307 223 77 39 chr15 38781113 38781243 -62599278 + L1ME4a LINE L1 5718 5852 -269 451 212 129 24 chr15 38781288 38781458 -62599063 + L1ME4a LINE L1 5934 6121 0 652 256 86 48 chr15 38782041 38782377 -62598144 - L1MC4 LINE L1 -237 7805 7457 1014 151 44 0 chr15 38782456 38782615 -62597906 + AluJb SINE Alu 1 166 -146 1017 216 31 14 chr15 38782675 38782897 -62597624 - MIR SINE MIR 0 262 37 8761 40 8 225 chr15 38782917 38784687 -62595834 - SVA Other Other 0 1386 1 29 60 0 0 chr15 38784746 38784796 -62595725 + AT_rich Low_complexity Low_complexity 1 50 0 2199 110 0 0 chr15 38785470 38785760 -62594761 + AluSq SINE Alu 1 290 -23 1770 154 20 24 chr15 38786511 38786809 -62593712 + AluJb SINE Alu 1 297 -15 2037 130 3 10 chr15 38787579 38787880 -62592641 + AluSg SINE Alu 1 299 -11 2103 133 3 0 chr15 38787893 38788195 -62592326 + AluSx SINE Alu 1 303 -9 427 262 166 11 chr15 38788294 38788481 -62592040 - MIR SINE MIR -18 244 29 1747 158 28 3 chr15 38789194 38789479 -62591042 - AluJo SINE Alu -20 292 1 774 274 70 50 chr15 38789508 38789787 -62590734 - L2 LINE L2 -91 3222 2933 2357 86 0 13 chr15 38789787 38790088 -62590433 + AluSc SINE Alu 1 297 -12 774 274 70 50 chr15 38790088 38790166 -62590355 - L2 LINE L2 -380 2933 2858 1108 267 20 32 chr15 38790181 38790525 -62589996 - L2 LINE L2 -572 2742 2403 22 0 0 0 chr15 38790908 38790930 -62589591 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr15 38792523 38792565 -62587956 + AT_rich Low_complexity Low_complexity 1 42 0 381 171 83 72 chr15 38792687 38792880 -62587641 - Charlie7 DNA MER1_type -4 2608 2414 762 182 81 50 chr15 38792944 38792985 -62587536 + MER3 DNA MER1_type 1 39 -170 2303 92 0 0 chr15 38792985 38793280 -62587241 + AluY SINE Alu 1 295 -16 762 182 81 50 chr15 38793280 38793436 -62587085 + MER3 DNA MER1_type 39 204 -5 251 234 0 0 chr15 38793400 38793447 -62587074 - MER3 DNA MER1_type -121 88 42 * 372 290 37 9 chr15 38793452 38793559 -62586962 - MER5B DNA MER1_type -3 175 66 2451 100 0 0 chr15 38793834 38794143 -62586378 + AluSc SINE Alu 1 309 0 276 173 0 0 chr15 38794186 38794238 -62586283 - Alu SINE Alu 0 308 257 884 165 37 0 chr15 38794338 38794502 -62586019 + AluJb SINE Alu 138 307 -5 328 266 138 15 chr15 38794700 38794903 -62585618 + HAL1b LINE L1 494 721 -627 28 0 0 0 chr15 38796205 38796233 -62584288 + AT_rich Low_complexity Low_complexity 1 28 0 2616 43 0 0 chr15 38796274 38796576 -62583945 + AluY SINE Alu 1 302 -9 2605 49 0 0 chr15 38796751 38797056 -62583465 + AluY SINE Alu 1 305 -6 2154 126 12 27 chr15 38797112 38797297 -62583224 + MER6 DNA MER2_type 274 460 -405 2323 81 10 0 chr15 38797297 38797592 -62582929 + AluSp SINE Alu 1 298 -15 2154 126 12 27 chr15 38797592 38797740 -62582781 + MER6 DNA MER2_type 460 862 -3 3436 165 24 24 chr15 38797742 38798372 -62582149 + L1MB7 LINE L1 5443 6072 -112 1343 285 98 60 chr15 38798378 38798733 -62581788 - ERVL LTR ERVL -630 4678 4338 1979 141 14 10 chr15 38798733 38799030 -62581491 + AluJo SINE Alu 1 298 -14 1343 285 98 60 chr15 38799030 38799082 -62581439 - ERVL LTR ERVL -970 4338 4289 2358 101 0 0 chr15 38799082 38799388 -62581133 + AluSx SINE Alu 1 306 -6 1343 285 98 60 chr15 38799388 38799643 -62580878 - ERVL LTR ERVL -1019 4289 3678 672 203 160 0 chr15 38799683 38799870 -62580651 - L1ME2 LINE L1 -251 5913 5697 1651 150 4 8 chr15 38799870 38800137 -62580384 - AluJb SINE Alu -13 299 34 2007 159 156 17 chr15 38800152 38800574 -62579947 + L1MC3 LINE L1 7142 7622 -163 2243 101 3 10 chr15 38800588 38800896 -62579625 - AluSx SINE Alu -6 306 1 331 188 0 0 chr15 38800896 38800960 -62579561 - Alu SINE Alu 0 302 239 1598 153 4 0 chr15 38800908 38801149 -62579372 - AluJo SINE Alu -22 290 49 257 236 112 22 chr15 38801324 38801413 -62579108 + MER34 LTR ERV1 417 513 -29 213 65 0 0 chr15 38801527 38801558 -62578963 + (TA)n Simple_repeat Simple_repeat 2 32 0 1449 132 68 34 chr15 38801558 38801793 -62578728 - AluJo SINE Alu -21 291 49 1804 165 7 0 chr15 38802410 38802701 -62577820 - AluJb SINE Alu -15 297 5 2035 129 21 37 chr15 38802894 38803275 -62577246 - THE1C LTR MaLR 0 375 1 1127 205 46 63 chr15 38803551 38803702 -62576819 + MLT1D LTR MaLR 20 172 -333 2397 86 10 0 chr15 38803702 38804004 -62576517 - AluSg SINE Alu -5 305 1 1127 205 46 63 chr15 38804004 38804199 -62576322 + MLT1D LTR MaLR 172 360 -145 26 0 0 0 chr15 38804712 38804738 -62575783 + AT_rich Low_complexity Low_complexity 1 26 0 1647 154 20 50 chr15 38804738 38805037 -62575484 - AluJo SINE Alu -21 291 2 985 281 90 22 chr15 38805123 38805174 -62575347 + L1MC4 LINE L1 5343 5389 -2419 1936 145 13 35 chr15 38805174 38805492 -62575029 + AluSq SINE Alu 1 311 -2 985 281 90 22 chr15 38805492 38805931 -62574590 + L1MC4 LINE L1 5389 5866 -1942 22 0 0 0 chr15 38806400 38806422 -62574099 + AT_rich Low_complexity Low_complexity 1 22 0 220 306 0 0 chr15 38807525 38807574 -62572947 - L2 LINE L2 -15 3257 3209 444 245 188 78 chr15 38807602 38807814 -62572707 + L1MC4 LINE L1 7347 7534 -508 2141 137 0 3 chr15 38807814 38808127 -62572394 + AluSx SINE Alu 1 312 0 444 245 188 78 chr15 38808127 38808297 -62572224 + L1MC4 LINE L1 7534 7771 -271 28 0 0 0 chr15 38809310 38809338 -62571183 + AT_rich Low_complexity Low_complexity 1 28 0 197 273 0 0 chr15 38809453 38809497 -62571024 - L2 LINE L2 0 3272 3229 2278 102 7 0 chr15 38810330 38810633 -62569888 + AluSg SINE Alu 1 305 -5 23 0 0 0 chr15 38810640 38810663 -62569858 + AT_rich Low_complexity Low_complexity 1 23 0 2227 128 0 3 chr15 38810667 38810979 -62569542 + AluSx SINE Alu 1 311 -1 204 40 0 0 chr15 38810980 38811005 -62569516 + (CA)n Simple_repeat Simple_repeat 2 26 0 273 303 160 6 chr15 38811373 38811548 -62568973 + LTR16B LTR ERVL 263 464 0 21 82 0 0 chr15 38811941 38811990 -62568531 + AT_rich Low_complexity Low_complexity 1 49 0 245 188 29 0 chr15 38812156 38812225 -62568296 + (CATA)n Simple_repeat Simple_repeat 3 73 0 478 265 122 0 chr15 38812842 38812989 -62567532 - MIR3 SINE MIR -14 194 30 2226 74 0 44 chr15 38813606 38813929 -62566592 + AluSg SINE Alu 1 310 0 22 0 0 0 chr15 38814209 38814231 -62566290 + AT_rich Low_complexity Low_complexity 1 22 0 1010 123 0 0 chr15 38815096 38815226 -62565295 + AluSg SINE Alu 1 130 -180 2174 98 0 33 chr15 38815229 38815535 -62564986 + AluSg SINE Alu 1 296 -14 24 0 0 0 chr15 38815535 38815559 -62564962 + AT_rich Low_complexity Low_complexity 1 24 0 1815 156 6 19 chr15 38815687 38815823 -62564698 + AluSx SINE Alu 1 137 -175 2070 104 11 4 chr15 38815823 38816159 -62564362 + AluSg SINE Alu 1 338 0 1815 156 6 19 chr15 38816159 38816335 -62564186 + AluSx SINE Alu 137 310 -2 263 211 9 140 chr15 38816426 38816480 -62564041 + L1ME LINE L1 5563 5596 -525 2157 102 40 7 chr15 38816480 38816783 -62563738 + AluSp SINE Alu 1 313 0 263 211 9 140 chr15 38816783 38816842 -62563679 + L1ME LINE L1 5596 5661 -460 3258 24 5 0 chr15 38817274 38817693 -62562828 - L1P LINE L1 -772 5374 4954 2260 11 0 11 chr15 38817693 38817954 -62562567 + L1PA2 LINE L1 5889 6148 -7 446 114 14 0 chr15 38818793 38818863 -62561658 - L1PA10 LINE L1 0 6168 6098 2138 143 0 6 chr15 38818931 38819245 -62561276 + AluSx SINE Alu 1 312 0 277 190 17 17 chr15 38819824 38819882 -62560639 + MIR3 SINE MIR 119 176 -32 2155 91 53 0 chr15 38820192 38820477 -62560044 + AluSx SINE Alu 1 300 -12 57 103 0 0 chr15 38820776 38820980 -62559541 + AT_rich Low_complexity Low_complexity 1 204 0 355 137 8 145 chr15 38821032 38821156 -62559365 + L1MB3 LINE L1 4972 5078 -1068 * 5534 43 0 0 chr15 38821155 38821867 -62558654 - L1PA5 LINE L1 -1605 4541 3830 6983 47 13 10 chr15 38821869 38823470 -62557051 + L1PA5 LINE L1 4546 6154 0 4110 142 35 13 chr15 38823481 38824411 -62556110 + L1MB3 LINE L1 5071 6019 -164 22 35 0 0 chr15 38824412 38824441 -62556080 + AT_rich Low_complexity Low_complexity 1 29 0 1741 157 23 30 chr15 38825229 38825529 -62554992 - AluJb SINE Alu -13 299 2 22 35 0 0 chr15 38826183 38826212 -62554309 + AT_rich Low_complexity Low_complexity 1 29 0 2307 97 0 13 chr15 38826394 38826703 -62553818 + AluSg SINE Alu 1 305 -5 1774 169 0 27 chr15 38826960 38827255 -62553266 + AluJb SINE Alu 1 287 -25 240 59 0 0 chr15 38827255 38827289 -62553232 + (CA)n Simple_repeat Simple_repeat 2 35 0 344 343 74 29 chr15 38827666 38827908 -62552613 - L2 LINE L2 -1291 2023 1771 197 193 193 0 chr15 38829162 38829219 -62551302 + MIR SINE MIR 1 68 -194 266 148 19 74 chr15 38829251 38829305 -62551216 + MIR SINE MIR 55 105 -157 422 312 8 0 chr15 38829568 38829693 -62550828 + MIR SINE MIR 127 252 -10 2064 88 81 4 chr15 38829712 38829985 -62550536 + AluSc SINE Alu 1 294 -15 234 265 193 12 chr15 38830947 38831030 -62549491 - L2 LINE L2 -52 3220 3123 2205 51 0 0 chr15 38831077 38831330 -62549191 + AluY SINE Alu 13 265 -46 429 235 8 0 chr15 38831624 38831732 -62548789 + MER5A DNA MER1_type 1 109 -80 1611 175 12 0 chr15 38831744 38831996 -62548525 - AluJo SINE Alu -21 291 37 5753 106 14 23 chr15 38832056 38832211 -62548310 + L1PA13 LINE L1 5162 5317 -846 2095 112 0 45 chr15 38832211 38832525 -62547996 + AluSx SINE Alu 1 300 -12 5753 106 14 23 chr15 38832525 38833374 -62547147 + L1PA13 LINE L1 5317 6161 -2 806 307 82 39 chr15 38833844 38834258 -62546263 + L3 LINE CR1 996 1427 -150 332 330 194 10 chr15 38834635 38834841 -62545680 + MIR SINE MIR 6 249 -13 1293 186 0 14 chr15 38835377 38835598 -62544923 - AluJo SINE Alu -13 299 82 900 107 0 0 chr15 38835611 38835733 -62544788 - AluSc SINE Alu -12 297 176 428 179 0 0 chr15 38835753 38835820 -62544701 + MER2 DNA MER2_type 279 345 0 1856 146 7 10 chr15 38835851 38836153 -62544368 + AluJo SINE Alu 1 301 -11 2091 117 7 0 chr15 38836954 38837237 -62543284 + AluSx SINE Alu 9 293 -19 2169 117 0 3 chr15 38837416 38837724 -62542797 + AluSx SINE Alu 1 307 -5 212 0 36 0 chr15 38838483 38838511 -62542010 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2237 107 0 3 chr15 38839695 38839993 -62540528 - AluSx SINE Alu -15 297 1 200 194 0 0 chr15 38840593 38840629 -62539892 + (CATA)n Simple_repeat Simple_repeat 2 37 0 759 164 8 22 chr15 38841014 38841148 -62539373 - FLAM_C SINE Alu -1 132 1 537 243 99 50 chr15 38842458 38842639 -62537882 - MIR SINE MIR -70 192 3 564 251 5 36 chr15 38842947 38843142 -62537379 + L1PBa LINE L1 6 194 -6669 905 113 38 13 chr15 38843142 38843301 -62537220 + L1PB1 LINE L1 5627 5789 -362 315 191 0 0 chr15 38843304 38843367 -62537154 + (CA)n Simple_repeat Simple_repeat 2 64 0 2332 119 0 22 chr15 38843372 38843743 -62536778 + L1PB1 LINE L1 5781 6143 -8 1593 174 26 3 chr15 38843751 38844062 -62536459 + L1MB2 LINE L1 5465 5782 -401 195 129 0 0 chr15 38844097 38844128 -62536393 + (TA)n Simple_repeat Simple_repeat 1 31 0 1336 151 57 8 chr15 38844128 38844393 -62536128 + L1MB2 LINE L1 5892 6169 -2 620 157 167 0 chr15 38844413 38844521 -62536000 - FRAM SINE Alu -30 146 21 795 167 0 0 chr15 38845306 38845432 -62535089 + FLAM_C SINE Alu 2 127 -6 2166 98 3 35 chr15 38845502 38845818 -62534703 - AluSp SINE Alu -6 307 2 377 329 148 30 chr15 38845938 38846303 -62534218 + L3 LINE CR1 1087 1494 -83 2254 103 24 0 chr15 38846361 38846653 -62533868 - AluSx SINE Alu -13 299 1 22 0 0 0 chr15 38846796 38846818 -62533703 + AT_rich Low_complexity Low_complexity 1 22 0 342 306 16 0 chr15 38847019 38847143 -62533378 + T-rich Low_complexity Low_complexity 1 126 0 2239 103 60 0 chr15 38847144 38847492 -62533029 - L1PA11 LINE L1 -2 6172 5804 5544 141 24 4 chr15 38847492 38848512 -62532009 - L1M LINE L1 -743 5403 4379 899 153 0 0 chr15 38848570 38848707 -62531814 - FLAM_C SINE Alu -6 137 1 356 257 44 81 chr15 38848854 38848990 -62531531 + MIR SINE MIR 132 262 0 22 80 0 0 chr15 38849467 38849517 -62531004 + AT_rich Low_complexity Low_complexity 1 50 0 223 186 0 0 chr15 38849855 38849898 -62530623 + A-rich Low_complexity Low_complexity 1 43 0 1868 176 10 3 chr15 38849968 38850270 -62530251 - AluJb SINE Alu -8 304 1 632 211 55 62 chr15 38850316 38850396 -62530125 - MER113 DNA MER1_type? -98 423 344 1853 114 0 8 chr15 38850396 38850661 -62529860 - AluSx SINE Alu 0 312 44 632 211 55 62 chr15 38850661 38850836 -62529685 - MER113 DNA MER1_type? -177 344 170 195 243 111 97 chr15 38850888 38851032 -62529489 + MIR SINE MIR 61 206 -56 2303 75 10 0 chr15 38851065 38851358 -62529163 - AluY SINE Alu -15 296 1 219 296 93 43 chr15 38851403 38851565 -62528956 - MIR SINE MIR -70 192 23 234 0 0 0 chr15 38852032 38852058 -62528463 + (A)n Simple_repeat Simple_repeat 1 26 0 1295 161 56 84 chr15 38853104 38853427 -62527094 + L1MB2 LINE L1 5858 6171 0 251 370 0 0 chr15 38853430 38853503 -62527018 - MIR SINE MIR -102 106 34 657 164 20 53 chr15 38853555 38853707 -62526814 + L1M4 LINE L1 5371 5517 -667 271 157 20 20 chr15 38853720 38853771 -62526750 + L1M4 LINE L1 4283 4333 -1813 895 165 183 0 chr15 38853771 38853935 -62526586 - AluJb SINE Alu -118 194 1 267 151 0 0 chr15 38853978 38854031 -62526490 + L1M4 LINE L1 3829 3881 -2265 250 128 0 0 chr15 38854035 38854074 -62526447 - L1M4 LINE L1 -1888 4258 4220 668 114 0 0 chr15 38854076 38854164 -62526357 - AluJ/FLAM SINE Alu -214 98 11 318 106 0 0 chr15 38854190 38854237 -62526284 - Tigger2 DNA MER2_type -2480 238 192 1827 211 36 3 chr15 38854237 38854621 -62525900 - L1M4 LINE L1 -1921 4225 3829 1995 141 40 0 chr15 38854664 38854962 -62525559 + AluSx SINE Alu 1 310 -2 631 268 73 29 chr15 38854992 38855374 -62525147 - L1MC4 LINE L1 -650 7392 7000 535 249 189 61 chr15 38855423 38855720 -62524801 - L1MC4 LINE L1 -967 7075 6741 2019 113 39 3 chr15 38856221 38856504 -62524017 - AluSx SINE Alu -19 293 1 1386 25 0 13 chr15 38857221 38857380 -62523141 - L1PA2 LINE L1 -1 6154 5998 2458 77 3 0 chr15 38857401 38857698 -62522823 - AluSp SINE Alu -15 298 1 279 0 0 0 chr15 38857740 38857771 -62522750 + (TCTCCC)n Simple_repeat Simple_repeat 3 33 0 6487 69 46 24 chr15 38857779 38859443 -62521078 + SVA Other Other 50 1380 -6 233 29 29 0 chr15 38859449 38859483 -62521038 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 953 206 0 6 chr15 38860469 38860634 -62519887 + AluJo SINE Alu 1 164 -148 817 152 8 24 chr15 38860970 38861095 -62519426 + FLAM_C SINE Alu 3 125 -18 21 57 0 0 chr15 38861101 38861136 -62519385 + AT_rich Low_complexity Low_complexity 1 35 0 631 266 141 43 chr15 38861143 38861281 -62519240 + HAL1b LINE L1 214 337 -1011 2318 63 0 11 chr15 38861281 38861594 -62518927 + AluY SINE Alu 1 310 0 631 266 141 43 chr15 38861594 38861822 -62518699 + HAL1b LINE L1 337 617 -731 1481 235 59 6 chr15 38861823 38862146 -62518375 - MER58B DNA MER1_type 0 341 2 4120 145 27 33 chr15 38862156 38862456 -62518065 - L1MC2 LINE L1 -350 5994 5694 2120 118 14 0 chr15 38862456 38862744 -62517777 + AluSx SINE Alu 1 292 -20 4120 145 27 33 chr15 38862744 38862920 -62517601 - L1MC2 LINE L1 -650 5694 5518 2223 116 7 0 chr15 38862920 38863230 -62517291 + AluSp SINE Alu 1 312 -1 4120 145 27 33 chr15 38863230 38863567 -62516954 - L1MC2 LINE L1 -826 5518 5186 523 253 21 27 chr15 38863562 38863748 -62516773 + L1ME LINE L1 5598 5782 -339 * 25 83 0 0 chr15 38863789 38863849 -62516672 + AT_rich Low_complexity Low_complexity 1 60 0 247 340 40 10 chr15 38864306 38864406 -62516115 + L3 LINE CR1 1465 1567 -10 263 361 8 0 chr15 38864555 38864674 -62515847 - MARNA DNA Mariner -345 241 122 486 256 58 16 chr15 38864919 38865040 -62515481 + L2 LINE L2 3187 3312 -1 2043 108 7 36 chr15 38865160 38865465 -62515056 - AluSx SINE Alu -16 296 1 2158 101 0 7 chr15 38865544 38865856 -62514665 + AluSp SINE Alu 1 310 0 884 159 43 37 chr15 38865937 38866100 -62514421 - MER20 DNA MER1_type -1 218 55 2207 95 7 0 chr15 38866241 38866535 -62513986 - AluSg1 SINE Alu -13 296 1 785 225 45 27 chr15 38866873 38867095 -62513426 + MER46C DNA MER2_type 1 226 -112 21 71 0 0 chr15 38867282 38867324 -62513197 + AT_rich Low_complexity Low_complexity 1 42 0 2037 104 0 112 chr15 38867384 38867722 -62512799 + AluSx SINE Alu 1 300 -2 657 209 31 19 chr15 38868400 38868650 -62511871 + L1MC4a LINE L1 5078 5504 -662 818 156 78 13 chr15 38868665 38868819 -62511702 + FAM SINE Alu 1 46 -3 2476 66 0 0 chr15 38868907 38869208 -62511313 + AluY SINE Alu 1 301 -10 626 239 233 21 chr15 38869403 38869734 -62510787 + L1MC4a LINE L1 5548 5948 -1860 236 285 85 0 chr15 38870050 38870152 -62510369 + L1MC/D LINE L1 5682 5790 -416 22 80 0 0 chr15 38870209 38870259 -62510262 + AT_rich Low_complexity Low_complexity 1 50 0 948 155 0 0 chr15 38870273 38870415 -62510106 - AluSp/q SINE Alu -7 306 165 2299 95 0 0 chr15 38870673 38870958 -62509563 + AluSx SINE Alu 11 295 -17 2232 87 0 11 chr15 38870994 38871280 -62509241 + AluY SINE Alu 1 283 -28 198 0 0 0 chr15 38871284 38871306 -62509215 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 580 138 100 92 chr15 38871391 38871521 -62509000 - FLAM_A SINE Alu -2 131 1 1616 203 70 10 chr15 38871525 38871924 -62508597 + L1MC4a LINE L1 7372 7794 -14 38 51 0 0 chr15 38872192 38872251 -62508270 + AT_rich Low_complexity Low_complexity 1 59 0 475 266 7 52 chr15 38872534 38872688 -62507833 - MIR3 SINE MIR -52 156 10 2344 97 6 0 chr15 38872710 38873021 -62507500 - AluSp SINE Alu 0 313 1 752 126 200 0 chr15 38873106 38873241 -62507280 + MER46A DNA MER2_type 73 234 -2 2020 93 114 0 chr15 38873440 38873720 -62506801 + AluSx SINE Alu 1 312 0 936 185 12 0 chr15 38873720 38873882 -62506639 + AluSg/x SINE Alu 134 297 -15 319 246 114 48 chr15 38874104 38874271 -62506250 + L2 LINE L2 3129 3306 -7 2410 79 0 0 chr15 38874344 38874635 -62505886 - AluSc SINE Alu -18 291 1 1751 154 9 38 chr15 38875284 38875602 -62504919 + AluJb SINE Alu 3 311 -1 271 273 130 39 chr15 38875608 38875762 -62504759 - L3 LINE CR1 -205 1372 1205 2061 96 18 11 chr15 38875938 38876248 -62504273 + AluSx SINE Alu 6 312 0 224 140 0 53 chr15 38876262 38876319 -62504202 + (T)n Simple_repeat Simple_repeat 1 54 0 566 229 294 14 chr15 38876361 38876654 -62503867 - L3 LINE CR1 -603 974 600 15973 125 32 6 chr15 38877639 38877950 -62502571 - Tigger1 DNA MER2_type 0 2418 2117 2165 102 41 0 chr15 38877950 38878245 -62502276 - AluSx SINE Alu -5 307 1 15973 125 32 6 chr15 38878245 38880289 -62500232 - Tigger1 DNA MER2_type -301 2117 1 2131 104 45 0 chr15 38880840 38881127 -62499394 + AluSx SINE Alu 3 302 -10 651 210 35 21 chr15 38881232 38881375 -62499146 + L1ME1 LINE L1 6016 6160 -6 210 37 0 0 chr15 38881439 38881466 -62499055 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 283 310 70 0 chr15 38881478 38881578 -62498943 - L2 LINE L2 -44 3228 3122 2399 82 0 0 chr15 38881664 38881958 -62498563 - AluY SINE Alu -17 294 1 363 269 42 71 chr15 38882274 38882338 -62498183 - L2 LINE L2 0 3313 3249 2389 70 3 0 chr15 38882338 38882625 -62497896 + AluSc SINE Alu 1 288 -21 363 269 42 71 chr15 38882625 38882772 -62497749 - L2 LINE L2 -64 3249 3108 944 261 133 25 chr15 38882834 38883202 -62497319 - L2 LINE L2 -338 2976 2569 409 298 25 97 chr15 38883255 38883331 -62497190 + L2 LINE L2 2351 2431 -883 1645 149 0 8 chr15 38883331 38883468 -62497053 + AluSx SINE Alu 1 137 -175 2237 104 3 10 chr15 38883468 38883777 -62496744 + AluSx SINE Alu 1 307 -5 1645 149 0 8 chr15 38883777 38883887 -62496634 + AluSx SINE Alu 137 246 -66 409 298 25 97 chr15 38883887 38884129 -62496392 + L2 LINE L2 2431 2646 -668 * 682 234 54 22 chr15 38884125 38884309 -62496212 - L2 LINE L2 -977 2337 2148 1949 160 3 0 chr15 38884671 38884959 -62495562 + AluSx SINE Alu 1 289 -23 1138 182 11 5 chr15 38884971 38885158 -62495363 + AluJb SINE Alu 105 292 -20 411 195 45 46 chr15 38885221 38885333 -62495188 + MER5A DNA MER1_type 2 102 -76 1855 94 3 94 chr15 38886524 38886833 -62493688 + AluSq SINE Alu 23 303 -10 295 266 154 30 chr15 38888345 38888514 -62492007 + L1MC4a LINE L1 5716 5905 -1903 26 64 0 0 chr15 38888640 38888687 -62491834 + AT_rich Low_complexity Low_complexity 1 47 0 267 246 80 125 chr15 38888833 38889097 -62491424 + MER112 DNA MER1_type 8 259 -1 2348 103 3 3 chr15 38889223 38889534 -62490987 + AluSq SINE Alu 1 311 -2 356 264 31 78 chr15 38889620 38889749 -62490772 - MIR SINE MIR -84 178 56 780 120 51 17 chr15 38889754 38889871 -62490650 + FLAM_C SINE Alu 7 127 -16 2289 98 3 0 chr15 38890011 38890307 -62490214 - AluSp SINE Alu -16 297 1 3883 129 21 20 chr15 38890329 38890939 -62489582 + L1MB3 LINE L1 5572 6182 -1 2338 97 0 0 chr15 38890947 38891246 -62489275 + AluSx SINE Alu 1 299 -13 352 333 53 47 chr15 38891261 38891316 -62489205 + L1ME LINE L1 4931 4984 -1162 2453 73 0 3 chr15 38891316 38891617 -62488904 - AluSg SINE Alu -10 300 1 352 333 53 47 chr15 38891617 38891686 -62488835 + L1ME LINE L1 4984 5051 -1095 1903 148 3 3 chr15 38891686 38891976 -62488545 - AluJb SINE Alu -22 290 1 352 333 53 47 chr15 38891976 38892171 -62488350 + L1ME LINE L1 5051 5253 -893 2000 152 0 0 chr15 38892185 38892487 -62488034 + AluJb SINE Alu 1 302 -10 583 281 106 64 chr15 38892491 38892796 -62487725 + L1ME LINE L1 5298 5634 -487 2409 82 0 3 chr15 38892796 38893100 -62487421 + AluSg1 SINE Alu 1 303 -6 583 281 106 64 chr15 38893100 38893296 -62487225 + L1ME LINE L1 5634 5820 -301 245 279 59 15 chr15 38893296 38893364 -62487157 + Charlie1 DNA MER1_type 20 90 -2671 964 173 28 0 chr15 38893365 38893544 -62486977 + AluJb SINE Alu 118 301 -11 3057 156 85 60 chr15 38893605 38894324 -62486197 + Charlie1 DNA MER1_type 1421 2157 -604 970 51 80 43 chr15 38894324 38894462 -62486059 + AluSg1 SINE Alu 1 143 -166 1721 177 105 47 chr15 38894490 38894615 -62485906 + Charlie1 DNA MER1_type 2156 2272 -489 2251 62 25 68 chr15 38894615 38894767 -62485754 + AluSg SINE Alu 1 133 -177 2392 63 3 0 chr15 38894767 38895054 -62485467 + AluY SINE Alu 7 294 -17 2251 62 25 68 chr15 38895054 38895225 -62485296 + AluSg SINE Alu 133 310 0 1721 177 105 47 chr15 38895225 38895243 -62485278 + Charlie1 DNA MER1_type 2272 2288 -473 2104 67 7 77 chr15 38895243 38895576 -62484945 + AluSq SINE Alu 6 317 0 1721 177 105 47 chr15 38895576 38895696 -62484825 + Charlie1 DNA MER1_type 2288 2400 -361 2655 45 0 0 chr15 38895696 38896007 -62484514 + AluY SINE Alu 1 311 0 1721 177 105 47 chr15 38896007 38896208 -62484313 + Charlie1 DNA MER1_type 2400 2650 -111 1116 98 0 52 chr15 38896208 38896381 -62484140 - AluSg/x SINE Alu -4 308 145 359 204 68 58 chr15 38896629 38896732 -62483789 + MER5B DNA MER1_type 5 108 -70 2282 91 0 0 chr15 38896735 38897033 -62483488 + AluY SINE Alu 14 311 0 1925 164 7 0 chr15 38897052 38897362 -62483159 + AluSx SINE Alu 1 312 0 243 61 0 0 chr15 38897407 38897440 -62483081 + (T)n Simple_repeat Simple_repeat 1 33 0 206 259 0 19 chr15 38898314 38898368 -62482153 + MER5B DNA MER1_type 126 178 0 1063 176 101 17 chr15 38898463 38898701 -62481820 - AluJo SINE Alu -19 293 36 1593 246 80 26 chr15 38898960 38899386 -62481135 - LTR16A LTR ERVL -1 449 1 775 59 0 126 chr15 38899448 38899567 -62480954 + AluSc SINE Alu 2 105 -204 2185 96 0 11 chr15 38899581 38899861 -62480660 + AluSc SINE Alu 2 278 -31 197 33 33 0 chr15 38899864 38899894 -62480627 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 280 336 129 0 chr15 38899943 38900083 -62480438 + MIR SINE MIR 49 206 -56 424 270 72 20 chr15 38900710 38900862 -62479659 - MIR SINE MIR -63 199 40 863 186 32 6 chr15 38901678 38901834 -62478687 + MER8 DNA MER2_type 1 160 -79 21 36 0 0 chr15 38901834 38901862 -62478659 + AT_rich Low_complexity Low_complexity 1 28 0 1086 163 0 0 chr15 38901862 38902022 -62478499 - AluSg/x SINE Alu -27 283 124 2357 93 3 0 chr15 38902022 38902332 -62478189 - AluSx SINE Alu -1 311 1 641 111 22 0 chr15 38902333 38902423 -62478098 + MER8 DNA MER2_type 147 238 -1 2181 155 22 11 chr15 38902465 38902826 -62477695 - MLT1A1 LTR MaLR 0 365 1 447 189 0 0 chr15 38902852 38902926 -62477595 + AluJ/FLAM SINE Alu 3 76 -236 1611 152 14 22 chr15 38902860 38903136 -62477385 + AluJb SINE Alu 11 284 -28 1164 61 7 0 chr15 38903165 38903313 -62477208 - L1PA6 LINE L1 -4 6150 6002 1020 184 206 0 chr15 38903665 38903943 -62476578 + MER58B DNA MER1_type 1 340 -1 322 253 21 11 chr15 38903999 38904094 -62476427 + HAL1 LINE L1 2107 2202 -305 459 0 0 0 chr15 38905325 38905376 -62475145 + (TG)n Simple_repeat Simple_repeat 2 52 0 21 57 0 0 chr15 38905428 38905463 -62475058 + AT_rich Low_complexity Low_complexity 1 35 0 1168 83 0 0 chr15 38905674 38905818 -62474703 - AluSp/q SINE Alu -14 299 156 363 288 58 37 chr15 38905972 38906163 -62474358 - L1ME LINE L1 -328 5793 5599 603 204 0 0 chr15 38906172 38906280 -62474241 + AluY SINE Alu 2 109 -202 337 303 112 62 chr15 38906285 38906879 -62473642 - HAL1 LINE L1 -1205 1302 876 32 26 0 0 chr15 38907074 38907113 -62473408 + AT_rich Low_complexity Low_complexity 1 39 0 1443 189 79 0 chr15 38907153 38907418 -62473103 - AluJb SINE Alu -26 286 1 1986 150 0 10 chr15 38907428 38907728 -62472793 - AluSx SINE Alu -15 297 1 530 123 0 14 chr15 38907728 38907801 -62472720 + MER2 DNA MER2_type 274 345 0 1624 139 29 0 chr15 38907801 38908074 -62472447 - L1MB3 LINE L1 -82 6101 5821 1263 135 10 13 chr15 38908189 38908207 -62472314 + L1MB4 LINE L1 5649 5666 -494 3607 122 4 9 chr15 38908207 38908731 -62471790 + L1PA15 LINE L1 5642 6162 -3 1263 135 10 13 chr15 38908731 38908938 -62471583 + L1MB4 LINE L1 5666 5876 -284 295 136 0 0 chr15 38908941 38908985 -62471536 + L1MB4 LINE L1 6074 6117 -63 1673 170 0 14 chr15 38908987 38909270 -62471251 - AluJb SINE Alu -33 279 1 24 0 0 0 chr15 38909283 38909307 -62471214 + AT_rich Low_complexity Low_complexity 1 24 0 1845 113 0 19 chr15 38909309 38909602 -62470919 + AluSx SINE Alu 26 313 0 1904 134 11 14 chr15 38909732 38910009 -62470512 + AluSq SINE Alu 1 276 -37 4566 70 19 6 chr15 38910526 38911541 -62468980 + MER11A LTR ERVK 1 1261 -5 181 384 71 0 chr15 38912110 38912222 -62468299 + L2 LINE L2 2832 2951 -363 2014 116 0 11 chr15 38912389 38912674 -62467847 - AluSc SINE Alu -27 282 1 21 71 0 0 chr15 38912884 38912926 -62467595 + AT_rich Low_complexity Low_complexity 1 42 0 2565 68 0 0 chr15 38913023 38913330 -62467191 + AluY SINE Alu 1 307 -4 207 0 0 0 chr15 38913334 38913357 -62467164 + (TA)n Simple_repeat Simple_repeat 2 24 0 2507 74 0 3 chr15 38914088 38914397 -62466124 + AluY SINE Alu 1 308 -3 1439 93 121 31 chr15 38915342 38915599 -62464922 + AluJo SINE Alu 2 281 -31 287 228 81 73 chr15 38915725 38915848 -62464673 - MIR SINE MIR -50 212 89 26 0 0 0 chr15 38916179 38916205 -62464316 + GC_rich Low_complexity Low_complexity 1 26 0 1362 55 6 0 chr15 38918281 38918444 -62462077 - L1PA7 LINE L1 0 6154 5991 1261 191 31 24 chr15 38918518 38918806 -62461715 + L1ME1 LINE L1 5862 6151 -15 22 70 0 0 chr15 38918816 38918859 -62461662 + AT_rich Low_complexity Low_complexity 1 43 0 1935 137 0 40 chr15 38918859 38919159 -62461362 - AluSx SINE Alu -24 288 1 1735 170 17 14 chr15 38919167 38919455 -62461066 - AluJo SINE Alu -23 289 1 21 0 0 0 chr15 38920954 38920975 -62459546 + AT_rich Low_complexity Low_complexity 1 21 0 659 202 25 8 chr15 38921118 38921237 -62459284 - FLAM_A SINE Alu -12 121 1 7598 109 19 7 chr15 38921378 38922476 -62458045 + Tigger1 DNA MER2_type 1 1111 -1307 8550 100 38 25 chr15 38923673 38924564 -62455957 + Tigger1 DNA MER2_type 1105 1983 -435 2407 80 3 0 chr15 38924564 38924865 -62455656 - AluSg SINE Alu -8 302 1 8550 100 38 25 chr15 38924865 38925062 -62455459 + Tigger1 DNA MER2_type 1983 2176 -242 2072 136 7 3 chr15 38925062 38925372 -62455149 - AluJb SINE Alu -1 311 1 8550 100 38 25 chr15 38925372 38925466 -62455055 + Tigger1 DNA MER2_type 2176 2267 -151 2223 124 0 0 chr15 38925466 38925764 -62454757 - AluSx SINE Alu -14 298 1 8550 100 38 25 chr15 38925764 38925877 -62454644 + Tigger1 DNA MER2_type 2267 2418 0 791 44 0 0 chr15 38927432 38927522 -62452999 + AluY SINE Alu 208 297 -14 22 56 0 0 chr15 38927557 38927593 -62452928 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr15 38927604 38927625 -62452896 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr15 38928085 38928111 -62452410 + AT_rich Low_complexity Low_complexity 1 26 0 1944 151 0 10 chr15 38928190 38928489 -62452032 - AluY SINE Alu -15 296 1 201 208 146 0 chr15 38928805 38928853 -62451668 - L2 LINE L2 -2 3270 3216 2175 127 0 0 chr15 38929956 38930248 -62450273 - AluSx SINE Alu -20 292 1 420 304 41 35 chr15 38930751 38930922 -62449599 + MER5A DNA MER1_type 2 173 -16 1830 215 99 17 chr15 38930937 38931402 -62449119 - L1ME2 LINE L1 0 6164 5662 239 230 20 60 chr15 38931482 38931582 -62448939 + MIR SINE MIR 121 216 -46 423 289 16 16 chr15 38932375 38932496 -62448025 - MER5A DNA MER1_type -8 181 61 1392 103 5 5 chr15 38932521 38932706 -62447815 - AluSq SINE Alu -128 185 1 181 186 85 34 chr15 38932706 38932765 -62447756 + MER5A DNA MER1_type 127 188 -1 437 298 92 54 chr15 38933541 38933857 -62446664 - MLT1I LTR MaLR -14 395 68 1860 105 126 4 chr15 38934048 38934325 -62446196 + AluSx SINE Alu 2 312 0 219 36 0 0 chr15 38935369 38935397 -62445124 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1946 132 0 0 chr15 38935399 38935679 -62444842 - AluSx SINE Alu -32 280 1 404 251 123 39 chr15 38936000 38936203 -62444318 - L1ME LINE L1 -333 5788 5569 4113 118 11 62 chr15 38936253 38936643 -62443878 - L1MB3 LINE L1 -16 6167 5826 261 0 0 0 chr15 38936643 38936672 -62443849 + (TG)n Simple_repeat Simple_repeat 2 30 0 4113 118 11 62 chr15 38936672 38936975 -62443546 - L1MB3 LINE L1 -357 5826 5509 2110 129 0 7 chr15 38937930 38938239 -62442282 + AluJb SINE Alu 1 307 -5 1707 157 4 0 chr15 38938243 38938510 -62442011 + AluJo SINE Alu 45 312 0 198 0 0 0 chr15 38939020 38939042 -62441479 + (CA)n Simple_repeat Simple_repeat 2 23 0 180 313 45 0 chr15 38939253 38939320 -62441201 - MIR SINE MIR -71 191 122 616 234 61 61 chr15 38939723 38939937 -62440584 - L1ME1 LINE L1 -7 6159 5946 1017 194 23 0 chr15 38940165 38940340 -62440181 + MER5A DNA MER1_type 7 185 -4 1893 216 70 44 chr15 38940526 38940826 -62439695 - L1MC5 LINE L1 -36 7925 7634 252 86 0 0 chr15 38940826 38940861 -62439660 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 1893 216 70 44 chr15 38940861 38941219 -62439302 - L1MC5 LINE L1 -327 7634 7250 610 225 35 126 chr15 38941292 38941523 -62438998 + MER63A DNA MER1_type 1 210 0 938 195 40 71 chr15 38941524 38941878 -62438643 - L1MC4 LINE L1 -733 7228 6920 922 258 21 103 chr15 38941880 38942085 -62438436 - L1MC4 LINE L1 -1003 7039 6819 4625 82 22 8 chr15 38942085 38942706 -62437815 - L1MA2 LINE L1 0 6304 5675 922 258 21 103 chr15 38942706 38942957 -62437564 - L1MC4 LINE L1 -1223 6819 6536 2123 125 7 0 chr15 38942958 38943253 -62437268 - AluSx SINE Alu -15 297 1 1377 149 104 36 chr15 38943253 38943561 -62436960 - L1M2 LINE L1 -684 5607 5279 810 210 55 22 chr15 38944235 38944416 -62436105 + AluJo SINE Alu 92 278 -34 348 24 0 0 chr15 38944419 38944460 -62436061 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2174 116 43 6 chr15 38944726 38945053 -62435468 + MER44D DNA MER2_type 1 609 0 306 267 87 50 chr15 38945340 38945501 -62435020 - L1ME4a LINE L1 -19 6102 5936 209 33 33 0 chr15 38945517 38945547 -62434974 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2168 82 7 11 chr15 38945557 38945837 -62434684 - AluSq SINE Alu -34 279 1 535 246 93 43 chr15 38945837 38946007 -62434514 - L1ME4a LINE L1 -159 5962 5802 1999 130 20 3 chr15 38946007 38946308 -62434213 - AluSx SINE Alu -6 306 1 2244 111 0 0 chr15 38946309 38946607 -62433914 - AluSx SINE Alu -14 298 1 535 246 93 43 chr15 38946607 38946779 -62433742 - L1ME4a LINE L1 -318 5803 5601 310 173 307 47 chr15 38946821 38946948 -62433573 + L2 LINE L2 3154 3313 0 22 0 0 0 chr15 38947053 38947075 -62433446 + AT_rich Low_complexity Low_complexity 1 22 0 334 270 146 0 chr15 38947342 38947376 -62433145 - MER5A DNA MER1_type -29 160 132 2610 56 0 0 chr15 38947376 38947682 -62432839 + AluY SINE Alu 1 306 -5 334 270 146 0 chr15 38947682 38947784 -62432737 - MER5A DNA MER1_type -57 132 4 911 196 0 20 chr15 38948143 38948347 -62432174 - L1M1 LINE L1 -4364 3201 3002 1177 157 0 11 chr15 38948352 38948530 -62431991 - AluJo SINE Alu -131 181 6 8101 188 49 63 chr15 38948532 38949327 -62431194 - L1M1 LINE L1 -4526 3039 2235 2411 76 0 0 chr15 38949327 38949664 -62430857 + AluY SINE Alu 1 337 0 8101 188 49 63 chr15 38949664 38950430 -62430091 - L1M1 LINE L1 -5330 2235 1460 7090 56 17 15 chr15 38950430 38951993 -62428528 - SVA Other Other -723 1386 53 670 40 0 30 chr15 38951993 38952093 -62428428 + (GGGAGA)n Simple_repeat Simple_repeat 3 99 0 8101 188 49 63 chr15 38952093 38953166 -62427355 - L1M1 LINE L1 -6103 1462 16 391 175 75 12 chr15 38953283 38953363 -62427158 - MER21B LTR ERV1 -778 85 1 1814 189 14 14 chr15 38953586 38953941 -62426580 - MER4D LTR ERV1 0 903 549 1409 142 14 0 chr15 38953996 38954214 -62426307 - MER49 LTR ERV1 -653 270 50 1131 168 49 63 chr15 38954216 38954671 -62425850 - LOR1-int LTR ERV1 -2111 4021 2480 408 133 12 60 chr15 38954756 38954839 -62425682 - LOR1-int LTR ERV1 -2868 3730 3652 2165 114 0 3 chr15 38954929 38955227 -62425294 + AluSx SINE Alu 1 297 -15 333 243 39 10 chr15 38955228 38955331 -62425190 - LOR1-int LTR ERV1 -1831 3049 2944 2206 103 0 6 chr15 38955490 38955802 -62424719 - AluY SINE Alu -1 310 1 2217 182 59 66 chr15 38955871 38956763 -62423758 - LOR1-int LTR ERV1 -2944 3213 988 1579 124 117 8 chr15 38956821 38957086 -62423435 + AluSg1 SINE Alu 1 294 -15 390 349 103 27 chr15 38957138 38957468 -62423053 + L2 LINE L2 2585 2939 -375 1866 121 10 26 chr15 38957731 38958038 -62422483 - AluSx SINE Alu -7 305 4 686 268 22 6 chr15 38958441 38958624 -62421897 - MIR SINE MIR -56 206 21 836 229 12 12 chr15 38958638 38958808 -62421713 + MER5B DNA MER1_type 7 176 -2 732 186 84 24 chr15 38958822 38958989 -62421532 + MER5B DNA MER1_type 1 177 -1 29 0 0 0 chr15 38959028 38959057 -62421464 + AT_rich Low_complexity Low_complexity 1 29 0 12306 50 1 6 chr15 38959577 38961081 -62419440 + L1P LINE L1 9 1504 -4642 6817 31 5 5 chr15 38961087 38961891 -62418630 + L1PA3 LINE L1 5352 6155 0 252 143 0 0 chr15 38962150 38962192 -62418329 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 707 167 25 0 chr15 38962996 38963116 -62417405 + FLAM_A SINE Alu 3 125 -8 451 207 0 12 chr15 38963286 38963368 -62417153 + Tigger3(Golem) DNA MER2_type 4 84 -2945 * 516 209 136 0 chr15 38963367 38963477 -62417044 + Tigger3(Golem) DNA MER2_type 2904 3028 -1 2089 120 0 0 chr15 38964007 38964299 -62416222 - AluSx SINE Alu -20 292 1 183 80 0 0 chr15 38964396 38964421 -62416100 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1885 154 7 0 chr15 38965385 38965678 -62414843 - AluSx SINE Alu -17 295 1 2265 105 0 0 chr15 38966317 38966630 -62413891 - AluSq SINE Alu 0 313 1 884 258 246 25 chr15 38966772 38967672 -62412849 + L2 LINE L2 2200 3313 0 251 215 7 104 chr15 38969124 38969259 -62411262 + (CGGGG)n Simple_repeat Simple_repeat 3 124 0 339 244 38 0 chr15 38969505 38969636 -62410885 + G-rich Low_complexity Low_complexity 4 139 0 284 274 195 18 chr15 38970208 38970321 -62410200 + MIR SINE MIR 124 256 -6 26 0 0 0 chr15 38970535 38970561 -62409960 + AT_rich Low_complexity Low_complexity 1 26 0 2174 101 0 0 chr15 38971148 38971446 -62409075 - AluSx SINE Alu -14 298 1 321 298 67 19 chr15 38971701 38971805 -62408716 + L1MC4 LINE L1 6593 6701 -1341 195 189 19 0 chr15 38971881 38971934 -62408587 - MER5C DNA MER1_type -34 290 237 550 183 78 0 chr15 38971957 38972072 -62408449 - MER5C DNA MER1_type -200 124 1 884 197 112 5 chr15 38972282 38972470 -62408051 - MER58A DNA MER1_type -16 208 1 2279 105 0 3 chr15 38972671 38972984 -62407537 + AluSx SINE Alu 1 312 0 24 32 0 0 chr15 38974386 38974417 -62406104 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chr15 38975223 38975245 -62405276 + (T)n Simple_repeat Simple_repeat 1 22 0 1391 220 146 35 chr15 38975639 38976298 -62404223 - L1MC4 LINE L1 0 8042 7311 1940 97 76 0 chr15 38976954 38977242 -62403279 + AluSg SINE Alu 1 310 0 279 0 0 0 chr15 38977926 38977957 -62402564 + (T)n Simple_repeat Simple_repeat 1 31 0 2246 104 0 7 chr15 38980159 38980468 -62400053 - AluSx SINE Alu -5 307 1 1860 136 118 33 chr15 38980704 38981101 -62399420 + MSTB1 LTR MaLR 1 431 -1 2878 54 8 0 chr15 38981652 38982004 -62398517 + THE1A LTR MaLR 1 355 0 11999 86 13 3 chr15 38982004 38983567 -62396954 + THE1A-int LTR MaLR 1 1580 0 2426 97 41 0 chr15 38983567 38983908 -62396613 + THE1A LTR MaLR 1 355 0 539 325 77 43 chr15 38984282 38984698 -62395823 + L1ME LINE L1 5213 5661 -509 2228 87 0 3 chr15 38984698 38984996 -62395525 - AluY SINE Alu -14 297 1 539 325 77 43 chr15 38984996 38985153 -62395368 + L1ME LINE L1 5661 5811 -359 22 0 0 0 chr15 38985206 38985228 -62395293 + AT_rich Low_complexity Low_complexity 1 22 0 302 351 48 65 chr15 38986269 38986517 -62394004 + L2 LINE L2 2943 3186 -86 343 295 187 0 chr15 38986574 38986740 -62393781 + MIR SINE MIR 65 261 -1 208 247 274 0 chr15 38987395 38987468 -62393053 + MIR SINE MIR 84 176 -86 238 125 0 0 chr15 38987484 38987524 -62392997 - Alu SINE Alu -4 298 259 817 260 16 36 chr15 38987609 38987832 -62392689 + MIR SINE MIR 45 262 0 198 333 26 0 chr15 38987842 38987956 -62392565 + L2 LINE L2 1575 1691 -1623 295 345 55 40 chr15 38988087 38988490 -62392031 + L2 LINE L2 2002 2410 -904 797 163 20 20 chr15 38988655 38988802 -62391719 + MER5B DNA MER1_type 1 147 -31 257 105 53 0 chr15 38988802 38988840 -62391681 + MER57A LTR ERV1 294 333 -70 282 149 21 0 chr15 38988860 38988907 -62391614 - MER5B DNA MER1_type -129 49 2 263 282 84 64 chr15 38988916 38989118 -62391403 + L2 LINE L2 2654 2859 -455 183 327 0 0 chr15 38989145 38989197 -62391324 - L2 LINE L2 -661 2653 2602 563 178 107 71 chr15 38989208 38989279 -62391242 - MER5B DNA MER1_type -3 175 108 2191 106 0 0 chr15 38989279 38989581 -62390940 - AluSx SINE Alu -10 302 1 563 178 107 71 chr15 38989581 38989678 -62390843 - MER5B DNA MER1_type -70 108 1 202 268 71 0 chr15 38989731 38989787 -62390734 + MER5B DNA MER1_type 50 109 -69 244 256 58 47 chr15 38989790 38989876 -62390645 + L2 LINE L2 2930 3016 -256 217 67 0 0 chr15 38990037 38990067 -62390454 + L2 LINE L2 3284 3313 0 483 178 59 40 chr15 38990863 38990964 -62389557 + MER20 DNA MER1_type 117 219 0 216 139 0 0 chr15 38991643 38991679 -62388842 - MIR SINE MIR -11 251 216 209 189 0 0 chr15 38991646 38991683 -62388838 - L2 LINE L2 -20 3293 3257 * 368 310 28 7 chr15 38993416 38993561 -62386960 + MER5A DNA MER1_type 6 153 -36 234 249 141 104 chr15 38994635 38994932 -62385589 - L2 LINE L2 -18 3254 2947 1775 145 14 14 chr15 38995668 38995965 -62384556 + AluJo SINE Alu 1 297 -15 2272 105 0 3 chr15 38995967 38996281 -62384240 + AluSq SINE Alu 1 313 0 21 0 0 0 chr15 38997001 38997022 -62383499 + AT_rich Low_complexity Low_complexity 1 21 0 450 180 0 0 chr15 38998467 38998549 -62381972 + MER69 DNA AcHobo 2442 2523 -3 380 274 37 30 chr15 38999398 38999533 -62380988 + MIR SINE MIR 125 260 -2 2199 93 20 3 chr15 38999570 38999872 -62380649 - AluSq SINE Alu -6 307 1 660 211 114 63 chr15 39000382 39000619 -62379902 + MIR SINE MIR 14 262 0 332 267 89 10 chr15 39000737 39000838 -62379683 - MIR3 SINE MIR -9 199 91 2163 118 158 13 chr15 39000970 39001344 -62379177 + MSTA LTR MaLR 1 428 0 258 291 124 78 chr15 39002231 39002537 -62377984 + L2 LINE L2 2953 3272 0 1899 204 26 33 chr15 39002926 39003347 -62377174 + MER63B DNA MER1_type 19 436 0 2244 71 3 3 chr15 39003547 39003842 -62376679 + AluSc SINE Alu 1 295 -14 296 237 35 41 chr15 39004351 39004520 -62376001 + (CACCAT)n Simple_repeat Simple_repeat 5 172 0 * 358 232 18 36 chr15 39004412 39004580 -62375941 + (CCA)n Simple_repeat Simple_repeat 1 165 0 216 0 0 0 chr15 39005703 39005727 -62374794 + (A)n Simple_repeat Simple_repeat 1 24 0 2215 91 28 3 chr15 39005748 39006035 -62374486 + AluSq SINE Alu 7 300 -13 399 313 60 25 chr15 39006131 39006499 -62374022 + L1MC4a LINE L1 4280 4660 -1486 897 259 68 29 chr15 39006599 39006921 -62373600 + L1MC4a LINE L1 4854 5162 -1133 2200 101 0 7 chr15 39006921 39007217 -62373304 + AluSg SINE Alu 5 298 -12 897 259 68 29 chr15 39007217 39007562 -62372959 + L1MC4a LINE L1 5162 5552 -743 1919 155 24 0 chr15 39007579 39007875 -62372646 + AluSx SINE Alu 1 303 -9 1302 172 96 33 chr15 39007938 39008270 -62372251 - MLT1B LTR MaLR -37 353 1 444 46 15 0 chr15 39008319 39008384 -62372137 + MER41A LTR ERV1 401 466 -88 848 249 36 68 chr15 39008403 39008660 -62371861 + L1MC4a LINE L1 5612 5855 -1953 2107 129 10 0 chr15 39008660 39008955 -62371566 - AluJo SINE Alu -14 298 1 848 249 36 68 chr15 39008955 39009062 -62371459 + L1MC4a LINE L1 5855 5964 -1844 420 309 61 93 chr15 39009416 39009694 -62370827 - L2 LINE L2 -18 3254 2986 4227 140 41 26 chr15 39009701 39010996 -62369525 - LTR12 LTR ERV1 0 1522 6 815 292 132 32 chr15 39011020 39011369 -62369152 - L2 LINE L2 -357 2957 2549 2491 82 0 0 chr15 39011369 39011672 -62368849 + AluSx SINE Alu 1 303 -9 815 292 132 32 chr15 39011672 39011785 -62368736 - L2 LINE L2 -765 2549 2449 205 290 51 72 chr15 39011793 39011931 -62368590 - MIR SINE MIR -24 238 104 235 253 114 0 chr15 39012147 39012226 -62368295 - MIR SINE MIR -84 124 37 318 363 53 29 chr15 39012315 39012486 -62368035 + L1MEd LINE L1 2 176 -5943 2028 102 33 53 chr15 39012698 39012826 -62367695 + AluSp SINE Alu 1 130 -183 180 0 0 0 chr15 39012826 39012846 -62367675 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2028 102 33 53 chr15 39012846 39013020 -62367501 + AluSp SINE Alu 130 297 -16 194 278 0 0 chr15 39013768 39013804 -62366717 + MIR SINE MIR 80 115 -147 293 319 55 0 chr15 39014317 39014408 -62366113 + L2 LINE L2 3217 3312 -1 588 238 78 121 chr15 39014681 39015102 -62365419 + L2 LINE L2 2870 3272 0 2869 3 0 0 chr15 39015422 39015723 -62364798 - AluYa5 SINE Alu -10 301 1 710 172 57 73 chr15 39016232 39016424 -62364097 + L2 LINE L2 3124 3312 -1 603 183 70 49 chr15 39016797 39016939 -62363582 - L2 LINE L2 0 3313 3169 1725 159 36 67 chr15 39017654 39018045 -62362476 + MER34B LTR ERV1 11 389 -176 432 270 140 17 chr15 39018172 39018350 -62362171 - MIR3 SINE MIR -7 201 2 405 273 14 43 chr15 39018942 39019081 -62361440 - MIR3 SINE MIR -68 140 6 426 116 12 23 chr15 39019134 39019220 -62361301 + (GGAA)n Simple_repeat Simple_repeat 2 86 0 403 317 25 12 chr15 39019924 39019943 -62360578 - MIR SINE MIR -98 164 147 189 0 0 0 chr15 39019943 39019964 -62360557 + (TTC)n Simple_repeat Simple_repeat 1 21 0 403 317 25 12 chr15 39019964 39020105 -62360416 - MIR SINE MIR -115 147 2 2237 125 0 7 chr15 39020566 39020870 -62359651 + AluSx SINE Alu 1 302 -10 896 286 29 7 chr15 39021056 39021332 -62359189 + LTR16C LTR ERVL 3 284 -207 437 172 189 8 chr15 39021351 39021431 -62359090 + MER53 DNA DNA 1 65 -124 896 213 0 6 chr15 39021431 39021595 -62358926 - FRAM SINE Alu -3 163 1 437 172 189 8 chr15 39021595 39021636 -62358885 + MER53 DNA DNA 65 144 -45 571 239 48 6 chr15 39021667 39021834 -62358687 + LTR16C LTR ERVL 316 489 -2 1544 200 29 0 chr15 39023281 39023561 -62356960 + AluJo SINE Alu 1 288 -24 3974 124 39 19 chr15 39023797 39024433 -62356088 + MER39B LTR ERV1 1 649 -4 216 196 0 20 chr15 39024588 39024639 -62355882 + G-rich Low_complexity Low_complexity 3 52 0 1831 58 0 27 chr15 39025596 39025821 -62354700 - AluSx SINE Alu -93 219 1 632 270 102 0 chr15 39025913 39026109 -62354412 - MIR SINE MIR 0 262 47 295 313 0 0 chr15 39026152 39026248 -62354273 - L1ME4a LINE L1 -210 5911 5816 256 329 121 7 chr15 39026257 39026406 -62354115 - L1ME4a LINE L1 -364 5757 5592 192 256 139 66 chr15 39027508 39027645 -62352876 + L2 LINE L2 2125 2271 -1043 393 298 147 40 chr15 39027718 39027916 -62352605 - MIR SINE MIR -30 232 14 208 300 0 0 chr15 39028176 39028226 -62352295 + L2 LINE L2 3214 3263 -9 1932 122 0 51 chr15 39028668 39028963 -62351558 + AluJo SINE Alu 1 280 -32 198 0 0 0 chr15 39028963 39028985 -62351536 + (TAAAA)n Simple_repeat Simple_repeat 1 22 0 272 296 104 35 chr15 39029972 39030202 -62350319 + L1MC5 LINE L1 7331 7576 -385 892 186 23 0 chr15 39030263 39030440 -62350081 + L1MC3 LINE L1 7236 7416 -369 * 1340 241 131 88 chr15 39030432 39030830 -62349691 + L1MEc LINE L1 220 600 -5796 1757 119 0 0 chr15 39030830 39031066 -62349455 + AluSq SINE Alu 73 308 -5 1340 241 131 88 chr15 39031066 39031278 -62349243 + L1MEc LINE L1 600 801 -5595 607 140 20 0 chr15 39031278 39031378 -62349143 + L1PA16 LINE L1 6056 6157 -9 1340 241 131 88 chr15 39031378 39031562 -62348959 + L1MEc LINE L1 801 1049 -5347 767 62 0 0 chr15 39031566 39031662 -62348859 + HY3 scRNA scRNA 5 100 -1 2193 117 17 0 chr15 39032055 39032354 -62348167 - AluY SINE Alu -7 304 1 215 250 173 58 chr15 39032430 39032534 -62347987 - MIR SINE MIR -1 261 146 1508 183 21 3 chr15 39033141 39033430 -62347091 - L1MB7 LINE L1 -10 6174 5881 290 271 47 0 chr15 39033818 39033903 -62346618 + MIR SINE MIR 98 186 -76 311 239 42 0 chr15 39034051 39034122 -62346399 + MIR SINE MIR 119 192 -70 1097 255 24 0 chr15 39034129 39034380 -62346141 - MIR SINE MIR -5 257 1 285 196 0 0 chr15 39034387 39034438 -62346083 + MIR SINE MIR 211 261 -1 214 278 56 83 chr15 39034535 39034643 -62345878 + L2 LINE L2 3168 3272 0 2317 95 0 7 chr15 39036194 39036498 -62344023 - AluSg SINE Alu -8 302 1 344 314 98 30 chr15 39038029 39038293 -62342228 + L2 LINE L2 2988 3269 -3 638 300 99 69 chr15 39038375 39038923 -62341598 + L2 LINE L2 2710 3271 -1 2210 138 0 0 chr15 39038933 39039245 -62341276 + AluJb SINE Alu 1 312 0 337 261 180 43 chr15 39039704 39039915 -62340606 + L1ME4a LINE L1 5879 6118 -3 524 198 119 2 chr15 39040809 39040955 -62339566 - MIR SINE MIR -47 161 3 466 330 6 0 chr15 39040993 39041175 -62339346 + L1ME LINE L1 5618 5800 -321 344 62 0 0 chr15 39041357 39041405 -62339116 - MADE1 DNA Mariner 0 80 33 346 123 0 0 chr15 39041406 39041463 -62339058 + L1PA15 LINE L1 5984 6040 -125 5387 55 1 1 chr15 39041463 39042123 -62338398 + L1PA5 LINE L1 5495 6154 0 841 150 0 36 chr15 39042144 39042284 -62338237 + L1PA15 LINE L1 6023 6157 -8 182 61 0 30 chr15 39042736 39042769 -62337752 + (GA)n Simple_repeat Simple_repeat 1 32 0 278 262 102 73 chr15 39043161 39043367 -62337154 + L1ME LINE L1 5694 5826 -295 423 248 51 33 chr15 39044496 39044659 -62335862 + MIR SINE MIR 51 212 -50 180 0 0 0 chr15 39044942 39044962 -62335559 + (T)n Simple_repeat Simple_repeat 1 20 0 2570 68 0 0 chr15 39044964 39045275 -62335246 - AluY SINE Alu 0 311 1 5889 186 70 6 chr15 39046323 39046391 -62334130 + L1MB7 LINE L1 3921 3983 -2201 2032 88 0 0 chr15 39046391 39046641 -62333880 + AluSg1 SINE Alu 1 250 -59 5889 186 70 6 chr15 39046641 39048683 -62331838 + L1MB7 LINE L1 3983 6176 -8 518 278 28 56 chr15 39048924 39049104 -62331417 - MIR SINE MIR -5 257 83 557 281 83 20 chr15 39049583 39049836 -62330685 + L1MC4a LINE L1 5643 5911 -1897 21 0 0 0 chr15 39050002 39050023 -62330498 + AT_rich Low_complexity Low_complexity 1 21 0 566 311 28 0 chr15 39050300 39050477 -62330044 - MIR3 SINE MIR -7 201 20 202 182 167 61 chr15 39053552 39053618 -62326903 + L2 LINE L2 3209 3281 -32 604 302 73 0 chr15 39053655 39053847 -62326674 - MIR SINE MIR -37 225 20 280 276 155 43 chr15 39054873 39054989 -62325532 + MIR3 SINE MIR 33 161 -47 5777 104 9 3 chr15 39055190 39056651 -62323870 - L1PA14 LINE L1 0 6161 4706 22 88 0 0 chr15 39056659 39056716 -62323805 + AT_rich Low_complexity Low_complexity 1 57 0 1963 116 7 3 chr15 39056723 39057031 -62323490 - AluSx SINE Alu 0 309 1 320 190 0 147 chr15 39057034 39057150 -62323371 - MIR SINE MIR -50 212 114 231 214 214 0 chr15 39057498 39057582 -62322939 - MIR3 SINE MIR -16 192 91 185 94 31 0 chr15 39057590 39057622 -62322899 + GA-rich Low_complexity Low_complexity 3 35 0 2021 117 3 0 chr15 39057646 39057945 -62322576 - AluSq SINE Alu -13 300 1 2116 104 0 35 chr15 39058400 39058718 -62321803 + AluSg SINE Alu 1 307 -3 329 250 0 10 chr15 39058785 39058889 -62321632 + GA-rich Low_complexity Low_complexity 2 104 0 342 273 8 23 chr15 39059137 39059269 -62321252 + L1ME4a LINE L1 5992 6121 0 2072 81 11 7 chr15 39059329 39059637 -62320884 + AluSq SINE Alu 1 309 0 234 283 66 28 chr15 39061344 39061450 -62319071 - MIR3 SINE MIR -96 112 3 247 299 13 13 chr15 39061557 39061634 -62318887 + L2 LINE L2 3232 3308 -5 1574 161 41 17 chr15 39062350 39062642 -62317879 - AluJo SINE Alu -13 299 1 240 254 254 0 chr15 39063942 39064060 -62316461 + MIR SINE MIR 24 171 -91 231 195 0 0 chr15 39064115 39064156 -62316365 + (CACCAT)n Simple_repeat Simple_repeat 2 42 0 2132 108 3 0 chr15 39064230 39064526 -62315995 + AluSq SINE Alu 1 297 -16 2018 113 22 92 chr15 39064572 39064942 -62315579 - LTR3b LTR ERVK 0 500 157 659 224 92 16 chr15 39064990 39065199 -62315322 - MIR SINE MIR -20 242 18 495 170 18 9 chr15 39065300 39065412 -62315109 - MER53 DNA DNA -8 181 69 * 769 129 74 49 chr15 39065410 39065573 -62314948 - MER53 DNA DNA -22 167 1 380 241 54 96 chr15 39066096 39066262 -62314259 - MIR SINE MIR -48 214 56 903 224 120 100 chr15 39066611 39066658 -62313863 - L1MC4 LINE L1 0 8042 7997 2301 81 0 0 chr15 39066658 39066956 -62313565 + AluY SINE Alu 1 298 -13 903 224 120 100 chr15 39066956 39067366 -62313155 - L1MC4 LINE L1 -45 7997 7570 484 149 0 0 chr15 39067366 39067453 -62313068 - L1PB4 LINE L1 0 6156 6070 903 224 120 100 chr15 39067453 39067553 -62312968 - L1MC4 LINE L1 -472 7570 7473 398 190 116 15 chr15 39067659 39067785 -62312736 - MIR SINE MIR -50 212 73 2102 94 31 0 chr15 39067815 39068101 -62312420 + AluSx SINE Alu 1 295 -17 189 195 0 0 chr15 39068233 39068274 -62312247 + (CA)n Simple_repeat Simple_repeat 2 42 0 1252 82 22 27 chr15 39069144 39069328 -62311193 + AluSg SINE Alu 1 183 -127 770 70 0 0 chr15 39069346 39069446 -62311075 - L1PA14 LINE L1 -3 6158 6059 234 62 0 0 chr15 39069725 39069757 -62310764 + (CA)n Simple_repeat Simple_repeat 2 33 0 290 247 14 0 chr15 39071065 39071138 -62309383 + MIR SINE MIR 77 150 -112 253 200 5 185 chr15 39072346 39072541 -62307980 + L1MC5 LINE L1 7619 7778 -183 1899 120 46 0 chr15 39072545 39072829 -62307692 + AluSx SINE Alu 2 298 -14 1594 193 33 30 chr15 39072884 39072952 -62307569 - MER58B DNA MER1_type -2087 333 267 13163 35 2 0 chr15 39072952 39075280 -62305241 - L1PA4 LINE L1 -1 6154 3825 1594 193 33 30 chr15 39075280 39075543 -62304978 - MER58B DNA MER1_type -2153 267 1 285 214 30 92 chr15 39075548 39075679 -62304842 + L1MC5 LINE L1 7809 7931 -30 537 261 137 43 chr15 39076198 39076520 -62304001 - L1ME4a LINE L1 -1 6120 5769 587 275 12 12 chr15 39076951 39077111 -62303410 + MIR SINE MIR 66 225 -37 285 191 0 63 chr15 39077603 39077729 -62302792 + G-rich Low_complexity Low_complexity 2 119 0 25 143 0 0 chr15 39078335 39078377 -62302144 + AT_rich Low_complexity Low_complexity 1 42 0 2073 115 7 0 chr15 39078377 39078664 -62301857 + AluSx SINE Alu 1 289 -23 279 0 0 0 chr15 39078665 39078696 -62301825 + (TA)n Simple_repeat Simple_repeat 2 32 0 1978 122 7 3 chr15 39079284 39079579 -62300942 + AluSx SINE Alu 1 296 -16 32 0 0 0 chr15 39079855 39079887 -62300634 + GC_rich Low_complexity Low_complexity 1 32 0 248 164 18 36 chr15 39080676 39080731 -62299790 + L2 LINE L2 3219 3272 0 429 249 170 24 chr15 39080844 39081009 -62299512 - MIR SINE MIR -61 201 13 262 271 146 35 chr15 39081025 39081169 -62299352 - MIR SINE MIR -71 191 32 27 65 0 0 chr15 39081444 39081475 -62299046 + GC_rich Low_complexity Low_complexity 1 31 0 253 298 106 78 chr15 39083745 39083899 -62296622 - L3b LINE CR1 -252 1331 1168 2781 3 0 3 chr15 39083899 39084211 -62296310 - AluYa5 SINE Alu 0 311 1 253 298 106 78 chr15 39084211 39084274 -62296247 - L3b LINE CR1 -415 1168 1108 221 306 59 12 chr15 39085124 39085209 -62295312 - L2 LINE L2 -672 2642 2554 194 322 34 0 chr15 39086387 39086446 -62294075 + MIR3 SINE MIR 15 75 -133 28 29 0 0 chr15 39086827 39086862 -62293659 + AT_rich Low_complexity Low_complexity 1 35 0 671 170 47 0 chr15 39086863 39086969 -62293552 - FLAM_A SINE Alu -26 116 6 374 186 108 29 chr15 39086974 39087076 -62293445 - MER103 DNA DNA -21 145 36 455 281 39 26 chr15 39087152 39087307 -62293214 + MIR SINE MIR 20 174 -62 311 246 95 48 chr15 39087410 39087536 -62292985 - L1MEc LINE L1 -5092 1304 1173 1683 121 83 31 chr15 39087539 39087829 -62292692 - AluSx SINE Alu -7 305 1 451 275 198 24 chr15 39089084 39089175 -62291346 + MIR SINE MIR 20 94 -168 1942 99 39 3 chr15 39089175 39089459 -62291062 + AluSp SINE Alu 1 294 -19 451 275 198 24 chr15 39089459 39089574 -62290947 + MIR SINE MIR 94 262 0 279 204 0 0 chr15 39089689 39089738 -62290783 - MER103 DNA DNA -45 121 73 2357 59 0 16 chr15 39091799 39092104 -62288417 - AluY SINE Alu -11 300 1 23 0 0 0 chr15 39092936 39092959 -62287562 + AT_rich Low_complexity Low_complexity 1 23 0 1574 157 21 7 chr15 39093069 39093356 -62287165 - AluSg SINE Alu -19 291 1 804 171 77 33 chr15 39094975 39095156 -62285365 - AluJb SINE Alu -123 189 1 310 132 19 0 chr15 39095184 39095237 -62285284 - L1M4 LINE L1 -2098 4048 3995 363 254 85 31 chr15 39095407 39095537 -62284984 - L1ME4a LINE L1 -217 5904 5768 480 180 40 0 chr15 39095686 39095786 -62284735 - MER21B LTR ERV1 -11 852 749 209 239 0 22 chr15 39096102 39096148 -62284373 - L2 LINE L2 -13 3259 3215 612 195 31 23 chr15 39096647 39096775 -62283746 + MER5B DNA MER1_type 1 129 -49 1114 133 0 0 chr15 39096864 39097029 -62283492 - AluSp SINE Alu -12 301 137 1841 88 11 46 chr15 39097812 39098095 -62282426 + AluY SINE Alu 1 273 -38 493 252 207 14 chr15 39098508 39098730 -62281791 + L2 LINE L2 3031 3295 -18 393 264 208 0 chr15 39098871 39098977 -62281544 - L2 LINE L2 -1 3312 3185 294 304 0 13 chr15 39099952 39100031 -62280490 - MIR SINE MIR -157 105 28 258 264 154 27 chr15 39101389 39101499 -62279022 - L2 LINE L2 0 3272 3149 1298 108 54 0 chr15 39101723 39101908 -62278613 + MER20 DNA MER1_type 1 195 -24 649 177 57 28 chr15 39101945 39102086 -62278435 + MER105 DNA DNA 1 145 -59 958 185 174 99 chr15 39102807 39103113 -62277408 - L1MC5 LINE L1 -309 7652 7298 2212 97 0 3 chr15 39103113 39103413 -62277108 - AluY SINE Alu -12 299 1 958 185 174 99 chr15 39103413 39103571 -62276950 - L1MC5 LINE L1 -663 7298 7153 2116 120 10 0 chr15 39103659 39103959 -62276562 - AluSq SINE Alu -10 303 1 404 256 210 16 chr15 39104049 39104358 -62276163 - L1ME4a LINE L1 -173 5948 5580 928 281 118 27 chr15 39104688 39105171 -62275350 - L2 LINE L2 -20 3293 2770 22 0 0 0 chr15 39105657 39105679 -62274842 + AT_rich Low_complexity Low_complexity 1 22 0 1718 145 7 3 chr15 39105725 39106008 -62274513 - AluJo SINE Alu -17 295 12 977 152 0 7 chr15 39105868 39106019 -62274502 - AluJo SINE Alu -162 150 1 180 0 0 0 chr15 39106019 39106039 -62274482 + (T)n Simple_repeat Simple_repeat 1 20 0 243 146 146 48 chr15 39106279 39106351 -62274170 - L1ME4a LINE L1 -10 6111 6025 2143 114 7 0 chr15 39106351 39106649 -62273872 + AluSx SINE Alu 5 304 -8 243 146 146 48 chr15 39106649 39106679 -62273842 - L1ME4a LINE L1 -96 6025 5999 422 121 76 0 chr15 39106729 39106795 -62273726 - AluJ/FRAM SINE Alu -24 288 218 711 154 0 0 chr15 39106817 39106927 -62273594 - AluJb SINE Alu -201 111 2 520 200 156 11 chr15 39106929 39107109 -62273412 - L1ME4a LINE L1 -178 5943 5738 797 192 40 0 chr15 39107804 39107955 -62272566 + FRAM SINE Alu 4 160 -6 356 225 37 126 chr15 39109146 39109337 -62271184 - LTR67 LTR ERVL -83 474 301 477 253 132 23 chr15 39109918 39110092 -62270429 + MIR SINE MIR 13 205 -57 210 371 161 0 chr15 39110564 39110688 -62269833 + L2 LINE L2 3102 3245 -27 2498 63 0 25 chr15 39111297 39111612 -62268909 - AluY SINE Alu -4 307 1 1803 175 0 10 chr15 39112255 39112558 -62267963 + AluJo SINE Alu 2 301 -11 2089 122 7 3 chr15 39113052 39113346 -62267175 - AluSx SINE Alu -17 295 1 279 0 0 0 chr15 39113934 39113965 -62266556 + (TA)n Simple_repeat Simple_repeat 1 31 0 2198 115 7 0 chr15 39113966 39114253 -62266268 - AluSx SINE Alu -23 289 1 29 47 0 0 chr15 39114253 39114296 -62266225 + AT_rich Low_complexity Low_complexity 1 43 0 278 271 68 60 chr15 39114297 39114430 -62266091 + MIR SINE MIR 20 153 -109 364 266 92 9 chr15 39114553 39114662 -62265859 + L2 LINE L2 3136 3253 -19 1815 146 41 20 chr15 39115165 39115459 -62265062 - AluJb SINE Alu -12 300 1 430 195 110 8 chr15 39115874 39115992 -62264529 - MIR SINE MIR -14 248 119 508 355 59 36 chr15 39116373 39116934 -62263587 + L2 LINE L2 1366 1939 -1375 1434 258 86 40 chr15 39120855 39121207 -62259314 + LTR33 LTR ERVL 27 406 -115 855 210 124 0 chr15 39121207 39121393 -62259128 - MER3 DNA MER1_type 0 209 1 1434 258 86 40 chr15 39121393 39121493 -62259028 + LTR33 LTR ERVL 406 500 -21 1316 167 152 11 chr15 39121882 39122145 -62258376 + AluJb SINE Alu 1 300 -2 900 131 7 21 chr15 39122411 39122556 -62257965 + FLAM_C SINE Alu 1 143 0 845 164 82 0 chr15 39122582 39122728 -62257793 + AluJb SINE Alu 125 282 -30 183 211 92 105 chr15 39122767 39122843 -62257678 - MIR SINE MIR -186 76 2 2280 85 0 33 chr15 39123921 39124265 -62256256 - AluSx SINE Alu 0 312 1 236 178 343 0 chr15 39124626 39124699 -62255822 + L2 LINE L2 3208 3305 -8 2423 79 3 0 chr15 39125556 39125847 -62254674 - AluSc SINE Alu -17 292 1 235 297 193 5 chr15 39126001 39126213 -62254308 + L1 LINE L1 4757 5008 -1138 478 272 64 87 chr15 39126690 39127036 -62253485 - L2 LINE L2 -51 3262 2925 2347 133 87 30 chr15 39127123 39127558 -62252963 - L1MC1 LINE L1 0 6333 5874 2128 113 7 10 chr15 39127567 39127877 -62252644 - AluSq SINE Alu -4 309 1 1209 233 80 10 chr15 39127882 39128268 -62252253 - L2 LINE L2 -598 2716 2304 1689 151 28 7 chr15 39128856 39129140 -62251381 + AluJb SINE Alu 10 299 -13 285 269 83 9 chr15 39130016 39130124 -62250397 - MIR SINE MIR -100 162 47 2437 86 0 0 chr15 39130229 39130532 -62249989 - AluSq SINE Alu -10 303 1 924 127 0 0 chr15 39130983 39131109 -62249412 - FLAM_C SINE Alu -17 126 1 1187 115 6 0 chr15 39131401 39131566 -62248955 - FRAM SINE Alu -10 166 1 1944 151 3 3 chr15 39132682 39132986 -62247535 - AluJo SINE Alu -3 309 6 370 293 67 18 chr15 39133022 39133186 -62247335 + MIR SINE MIR 82 253 -9 226 262 0 33 chr15 39133244 39133305 -62247216 + MER115 DNA AcHobo 4 62 -631 730 153 26 0 chr15 39133905 39134047 -62246474 - L1MB5 LINE L1 -222 5944 5800 2426 160 15 20 chr15 39134238 39134367 -62246154 + L1MB5 LINE L1 5699 5827 -347 2307 109 0 0 chr15 39134367 39134670 -62245851 + AluSx SINE Alu 1 303 -9 2426 160 15 20 chr15 39134670 39134996 -62245525 + L1MB5 LINE L1 5827 6152 -22 370 318 126 25 chr15 39135008 39135247 -62245274 - LTR16C LTR ERVL -131 360 98 578 281 140 56 chr15 39135882 39136086 -62244435 + MLT1J LTR MaLR 1 186 -325 1983 137 40 0 chr15 39136086 39136385 -62244136 + AluSq SINE Alu 1 311 -2 578 281 140 56 chr15 39136385 39136643 -62243878 + MLT1J LTR MaLR 186 502 -9 502 349 53 3 chr15 39136693 39137014 -62243507 + L2 LINE L2 1276 1612 -1702 277 281 37 12 chr15 39137015 39137097 -62243424 + Charlie8 DNA MER1_type 3 86 -2331 404 147 52 86 chr15 39137100 39137216 -62243305 - L1ME1 LINE L1 0 6166 6055 1735 164 0 24 chr15 39137228 39137520 -62243001 + AluJo SINE Alu 3 287 -25 737 283 61 38 chr15 39137529 39137974 -62242547 + L2 LINE L2 2323 2777 -537 394 222 44 52 chr15 39138298 39138433 -62242088 + L2 LINE L2 3180 3313 0 329 238 25 0 chr15 39138964 39139044 -62241477 + L2 LINE L2 3191 3272 0 233 381 44 6 chr15 39139073 39139233 -62241288 - L2 LINE L2 -219 3053 2888 * 838 290 94 37 chr15 39139232 39139755 -62240766 + L2 LINE L2 2762 3313 0 424 263 128 40 chr15 39139765 39140039 -62240482 - L2 LINE L2 -464 2850 2553 1826 68 0 5 chr15 39140350 39140571 -62239950 + AluY SINE Alu 1 220 -91 315 85 0 0 chr15 39140571 39140618 -62239903 + AluY SINE Alu 253 299 -1 191 317 69 28 chr15 39141391 39141536 -62238985 - L2 LINE L2 -449 2865 2715 2398 78 3 0 chr15 39141694 39141987 -62238534 - AluY SINE Alu -17 294 1 352 264 66 71 chr15 39142089 39142286 -62238235 - MIR SINE MIR -46 216 21 471 113 0 0 chr15 39143310 39143390 -62237131 + (TG)n Simple_repeat Simple_repeat 2 81 0 2080 127 0 0 chr15 39143392 39143675 -62236846 - AluSx SINE Alu -29 283 1 207 255 0 0 chr15 39143676 39143727 -62236794 + L2 LINE L2 3169 3219 -94 2224 112 3 0 chr15 39144245 39144540 -62235981 + AluSx SINE Alu 9 304 -8 22 35 0 0 chr15 39144577 39144606 -62235915 + AT_rich Low_complexity Low_complexity 1 29 0 2373 133 12 31 chr15 39145320 39145735 -62234786 - L1MA5 LINE L1 0 6300 5894 2374 106 0 0 chr15 39146941 39147252 -62233269 - AluSx SINE Alu -1 311 1 1748 179 0 3 chr15 39147319 39147620 -62232901 + AluJb SINE Alu 3 302 -10 2432 59 0 14 chr15 39147790 39148080 -62232441 - AluY SINE Alu -25 286 1 485 232 43 43 chr15 39148170 39148308 -62232213 + MIR SINE MIR 17 154 -108 221 385 46 6 chr15 39149216 39149390 -62231131 + L2 LINE L2 2563 2743 -571 243 255 85 0 chr15 39149421 39149515 -62231006 - L1ME4a LINE L1 -13 6108 6007 375 204 50 99 chr15 39149705 39149811 -62230710 - L1ME4a LINE L1 -415 5706 5609 2309 75 7 0 chr15 39149811 39150125 -62230396 - AluSc SINE Alu 0 316 1 375 204 50 99 chr15 39150125 39150197 -62230324 - L1ME4a LINE L1 -512 5609 5535 269 283 288 16 chr15 39150421 39150612 -62229909 + MIR SINE MIR 16 258 -4 2258 115 3 0 chr15 39150949 39151426 -62229095 - AluSg SINE Alu 0 478 1 2571 63 0 0 chr15 39152154 39152456 -62228065 - AluY SINE Alu -9 302 1 358 269 92 7 chr15 39152507 39152648 -62227873 + MER112 DNA MER1_type 102 254 -6 306 282 36 77 chr15 39152944 39152986 -62227535 + L3 LINE CR1 516 558 -1019 2042 141 10 0 chr15 39152986 39153291 -62227230 - AluSx SINE Alu -4 308 1 306 282 36 77 chr15 39153291 39153443 -62227078 + L3 LINE CR1 558 702 -875 977 203 5 28 chr15 39153479 39153696 -62226825 + AluJo SINE Alu 84 295 -17 415 188 141 0 chr15 39153813 39153898 -62226623 - MER20 DNA MER1_type -122 97 1 575 276 46 10 chr15 39154023 39154219 -62226302 - MIR SINE MIR 0 262 60 436 298 121 28 chr15 39155508 39155790 -62224731 + L2 LINE L2 3005 3312 -1 23 33 0 0 chr15 39155957 39155987 -62224534 + AT_rich Low_complexity Low_complexity 1 30 0 680 189 163 11 chr15 39156240 39156430 -62224091 - MIR SINE MIR -16 246 28 2566 52 0 13 chr15 39156433 39156741 -62223780 - AluY SINE Alu -6 305 2 276 282 0 39 chr15 39156945 39157048 -62223473 + L2 LINE L2 3180 3278 -35 2983 135 121 34 chr15 39157048 39157117 -62223404 + L1MB3 LINE L1 5539 5601 -582 1650 189 10 20 chr15 39157117 39157414 -62223107 + AluJo SINE Alu 1 294 -18 2983 135 121 34 chr15 39157414 39157704 -62222817 + L1MB3 LINE L1 5601 5864 -319 2214 107 0 0 chr15 39157704 39157993 -62222528 - AluSx SINE Alu -23 289 1 2983 135 121 34 chr15 39157993 39158218 -62222303 + L1MB3 LINE L1 5864 6175 -8 1968 139 40 3 chr15 39160131 39160432 -62220089 + AluSx SINE Alu 1 312 0 349 270 38 8 chr15 39161520 39161721 -62218800 - MIR SINE MIR 0 262 1 313 293 60 20 chr15 39161951 39162101 -62218420 + L1MB8 LINE L1 5980 6135 -43 543 269 28 33 chr15 39162472 39162654 -62217867 + L1MB7 LINE L1 5986 6166 0 2404 69 7 7 chr15 39162663 39162967 -62217554 + AluY SINE Alu 1 304 -7 382 295 95 29 chr15 39163826 39164036 -62216485 + L1ME3A LINE L1 5597 5820 -301 180 316 53 0 chr15 39164204 39164261 -62216260 + L3 LINE CR1 1509 1568 -9 898 143 0 0 chr15 39164284 39164410 -62216111 - FLAM_C SINE Alu -17 126 1 1860 226 63 95 chr15 39164694 39164758 -62215763 - L1MC4 LINE L1 -1 8041 7976 2083 118 17 0 chr15 39164758 39165055 -62215466 + AluJo SINE Alu 1 302 -10 1860 226 63 95 chr15 39165055 39165245 -62215276 - L1MC4 LINE L1 -66 7976 7781 1817 150 40 0 chr15 39165245 39165545 -62214976 + AluJo SINE Alu 1 312 0 1860 226 63 95 chr15 39165545 39166119 -62214402 - L1MC4 LINE L1 -261 7781 7239 35 0 0 0 chr15 39166270 39166305 -62214216 + AT_rich Low_complexity Low_complexity 1 35 0 1836 136 16 48 chr15 39167106 39167415 -62213106 - AluSx SINE Alu -13 299 1 544 269 185 41 chr15 39167484 39167852 -62212669 - L2 LINE L2 0 3313 2893 565 363 113 16 chr15 39167960 39168517 -62212004 - L2 LINE L2 -483 2831 2221 297 0 0 0 chr15 39169651 39169684 -62210837 + (TA)n Simple_repeat Simple_repeat 2 34 0 204 40 0 0 chr15 39169684 39169709 -62210812 + (T)n Simple_repeat Simple_repeat 1 25 0 2363 108 0 0 chr15 39169748 39170055 -62210466 + AluSx SINE Alu 1 307 -5 221 264 36 129 chr15 39170721 39170762 -62209759 - MER5B DNA MER1_type -3 175 132 2174 128 10 0 chr15 39170762 39171067 -62209454 - AluSx SINE Alu -4 308 1 221 264 36 129 chr15 39171067 39171153 -62209368 - MER5B DNA MER1_type -46 132 59 1880 149 3 10 chr15 39171153 39171455 -62209066 - AluJb SINE Alu -11 301 2 221 264 36 129 chr15 39171455 39171466 -62209055 - MER5B DNA MER1_type -119 59 49 1033 189 70 48 chr15 39172226 39172496 -62208025 + L1ME3A LINE L1 5895 6170 0 234 305 78 19 chr15 39172540 39172694 -62207827 - L1 LINE L1 -1796 4350 4188 483 176 22 0 chr15 39172695 39172786 -62207735 - FLAM_A SINE Alu -9 133 41 622 253 192 32 chr15 39172797 39172993 -62207528 - L1 LINE L1 -2187 3959 3796 1761 157 34 115 chr15 39172993 39173401 -62207120 - THE1C LTR MaLR 0 375 1 622 253 192 32 chr15 39173401 39173710 -62206811 - L1 LINE L1 -2350 3796 3373 2246 114 10 0 chr15 39173806 39174113 -62206408 - AluSx SINE Alu -2 310 1 880 156 6 220 chr15 39174140 39174499 -62206022 - AluJo SINE Alu -30 282 1 1751 169 0 24 chr15 39174504 39174800 -62205721 - AluJo SINE Alu -18 294 6 1453 169 0 0 chr15 39174800 39175025 -62205496 - 7SLRNA srpRNA srpRNA -92 228 4 33 0 0 0 chr15 39175038 39175071 -62205450 + AT_rich Low_complexity Low_complexity 1 33 0 2039 143 0 13 chr15 39175073 39175373 -62205148 + AluSx SINE Alu 1 296 -16 405 0 0 0 chr15 39175380 39175425 -62205096 + (CA)n Simple_repeat Simple_repeat 2 46 0 316 278 31 10 chr15 39175575 39175672 -62204849 - L1 LINE L1 -3148 2998 2900 234 281 21 10 chr15 39175686 39175782 -62204739 - L1 LINE L1 -3329 2817 2721 2176 108 0 3 chr15 39175784 39176103 -62204418 - AluSx SINE Alu 0 312 1 256 262 33 16 chr15 39176103 39176169 -62204352 - L1 LINE L1 -3769 2377 2312 991 193 41 78 chr15 39176169 39176510 -62204011 - L1ME1 LINE L1 -164 6002 2254 1768 80 0 4 chr15 39176517 39176743 -62203778 - AluSc SINE Alu -14 295 71 3391 34 0 0 chr15 39176753 39177132 -62203389 - L1PA4 LINE L1 -3 6152 5774 443 119 0 0 chr15 39177147 39177206 -62203315 - AluSc SINE Alu -224 85 27 1094 204 168 8 chr15 39177207 39177388 -62203133 - L1M3 LINE L1 -730 5441 5290 2140 114 3 3 chr15 39177388 39177685 -62202836 - AluY SINE Alu -12 299 3 1094 204 168 8 chr15 39177685 39177884 -62202637 - L1M3 LINE L1 -881 5290 4999 2184 129 111 3 chr15 39177884 39178270 -62202251 + MSTA LTR MaLR 1 428 0 839 283 105 71 chr15 39179855 39180407 -62200114 - MLT1K LTR MaLR -16 572 2 271 242 11 84 chr15 39181100 39181195 -62199326 - MIR3 SINE MIR -34 174 87 1552 140 0 5 chr15 39181400 39181622 -62198899 - AluSg/x SINE Alu -20 292 72 760 172 8 15 chr15 39181948 39182082 -62198439 + FLAM_A SINE Alu 1 133 0 237 319 28 0 chr15 39182131 39182203 -62198318 - Charlie8 DNA MER1_type 0 2417 2344 458 263 119 27 chr15 39182480 39182773 -62197748 - L1MC5 LINE L1 -102 7859 7540 1688 146 86 4 chr15 39183060 39183328 -62197193 - AluJo SINE Alu -22 290 1 331 215 89 0 chr15 39183515 39183594 -62196927 - L1ME3A LINE L1 -321 5849 5764 1374 166 5 9 chr15 39184067 39184321 -62196200 - AluJo SINE Alu 0 313 61 1995 128 0 7 chr15 39184328 39184616 -62195905 + AluSq SINE Alu 13 298 -15 2084 95 3 57 chr15 39185695 39186010 -62194511 + AluSg SINE Alu 1 298 -12 578 229 115 13 chr15 39186322 39186479 -62194042 + MER5B DNA MER1_type 1 173 -5 388 311 115 75 chr15 39186765 39187138 -62193383 - L2 LINE L2 -6 3266 2879 208 289 157 12 chr15 39188323 39188406 -62192115 - MIR3 SINE MIR -8 200 106 332 276 86 0 chr15 39188526 39188631 -62191890 + MIR SINE MIR 33 146 -62 389 238 0 12 chr15 39189189 39189273 -62191248 - L2 LINE L2 -1 3312 3230 1279 174 30 30 chr15 39189476 39189781 -62190740 + AluSq SINE Alu 1 305 -8 222 224 0 0 chr15 39190696 39190745 -62189776 + L3 LINE CR1 1527 1575 -2 217 156 0 89 chr15 39190923 39190968 -62189553 + L2 LINE L2 3251 3291 -22 1803 166 3 10 chr15 39191660 39191962 -62188559 + AluJb SINE Alu 1 300 -12 2120 98 0 0 chr15 39191972 39192249 -62188272 + AluY SINE Alu 2 278 -33 324 0 0 0 chr15 39192249 39192285 -62188236 + (CA)n Simple_repeat Simple_repeat 1 36 0 2401 68 0 0 chr15 39192287 39192583 -62187938 + AluY SINE Alu 1 296 -15 390 259 46 96 chr15 39192847 39193044 -62187477 - L3b LINE CR1 -87 1496 1310 1473 156 28 16 chr15 39193374 39193624 -62186897 - AluSp SINE Alu -12 301 49 219 224 86 0 chr15 39193775 39193833 -62186688 + L2 LINE L2 3249 3311 -2 1874 129 64 0 chr15 39193867 39194147 -62186374 + AluSx SINE Alu 1 298 -14 2496 104 6 3 chr15 39194319 39194666 -62185855 + L1MB3 LINE L1 5835 6182 -1 22 70 0 0 chr15 39194859 39194902 -62185619 + AT_rich Low_complexity Low_complexity 1 43 0 2066 219 45 54 chr15 39194922 39195547 -62184974 + L1MC4 LINE L1 7183 7801 -241 1402 102 30 5 chr15 39195981 39196178 -62184343 + L1PA15 LINE L1 5957 6158 -7 180 273 0 0 chr15 39196719 39196763 -62183758 - MIR SINE MIR -4 258 215 * 1326 246 17 0 chr15 39196757 39197050 -62183471 + L2 LINE L2 2160 2457 -857 448 184 98 43 chr15 39197168 39197289 -62183232 - L1MC5 LINE L1 -133 7828 7694 2207 126 0 3 chr15 39197289 39197598 -62182923 + AluSx SINE Alu 1 308 -4 448 184 98 43 chr15 39197598 39197639 -62182882 - L1MC5 LINE L1 -267 7694 7657 754 176 78 14 chr15 39197646 39197788 -62182733 + AluJb SINE Alu 137 287 -25 2925 190 57 39 chr15 39197900 39197955 -62182566 - L1ME2 LINE L1 -1 6163 6110 1751 148 7 52 chr15 39197955 39198265 -62182256 - AluJo SINE Alu -16 296 1 2925 190 57 39 chr15 39198265 39198797 -62181724 - L1ME2 LINE L1 -54 6110 5560 1785 156 3 23 chr15 39198797 39199105 -62181416 + AluJo SINE Alu 9 310 -2 2925 190 57 39 chr15 39199105 39199186 -62181335 - L1ME2 LINE L1 -604 5560 5482 2088 105 20 16 chr15 39199204 39199509 -62181012 - AluY SINE Alu -5 306 1 1934 150 10 0 chr15 39199510 39199803 -62180718 - AluSx SINE Alu -16 296 1 791 205 24 101 chr15 39199812 39200100 -62180421 - L1ME2 LINE L1 0 6164 5899 1851 143 11 0 chr15 39200126 39200436 -62180085 + AluSx SINE Alu 1 313 0 1042 167 0 0 chr15 39200436 39200592 -62179929 + AluJb SINE Alu 137 292 -20 594 225 133 67 chr15 39200690 39200930 -62179591 + Charlie8 DNA MER1_type 9 264 -2153 270 234 13 52 chr15 39201000 39201077 -62179444 + Charlie8 DNA MER1_type 2343 2416 -1 201 317 0 0 chr15 39201263 39201304 -62179217 - L2 LINE L2 -98 3174 3134 304 230 0 27 chr15 39201606 39201680 -62178841 - AluSc SINE Alu -10 289 218 316 217 33 11 chr15 39201812 39201904 -62178617 + LTR16B LTR ERVL 271 364 -100 1155 168 51 5 chr15 39201930 39202144 -62178377 - MER2 DNA MER2_type -1 344 121 754 147 7 63 chr15 39202144 39202287 -62178234 + AluJo SINE Alu 2 136 -176 866 199 6 32 chr15 39202296 39202452 -62178069 - FRAM SINE Alu -24 152 1 674 258 46 16 chr15 39202482 39202676 -62177845 - MIR SINE MIR -36 226 27 2206 108 3 16 chr15 39202878 39203193 -62177328 + AluSx SINE Alu 1 311 -1 1543 139 111 84 chr15 39204935 39205276 -62175245 + MER51A LTR ERV1 1 569 -65 2385 94 0 0 chr15 39205276 39205575 -62174946 - AluSx SINE Alu -13 299 1 1543 139 111 84 chr15 39205575 39205643 -62174878 + MER51A LTR ERV1 569 634 0 26 64 0 0 chr15 39205719 39205766 -62174755 + AT_rich Low_complexity Low_complexity 1 47 0 1674 166 40 3 chr15 39205851 39206152 -62174369 - AluJb SINE Alu 0 312 1 1992 131 3 39 chr15 39206217 39206523 -62173998 + AluSg SINE Alu 1 295 -15 405 170 64 0 chr15 39206616 39206710 -62173811 - HAL1 LINE L1 -90 2417 2318 1691 170 17 30 chr15 39206710 39207010 -62173511 - AluJo SINE Alu -16 296 1 3131 205 147 27 chr15 39207032 39207626 -62172895 - HAL1 LINE L1 -307 2200 1678 858 154 0 22 chr15 39207626 39207789 -62172732 + FLAM_C SINE Alu 1 133 0 3131 205 147 27 chr15 39207789 39208155 -62172366 - HAL1 LINE L1 -829 1678 1125 831 193 58 40 chr15 39208168 39208391 -62172130 - L1MB8 LINE L1 -6 6172 5946 208 289 157 12 chr15 39209856 39209939 -62170582 - MIR3 SINE MIR -8 200 106 332 276 86 0 chr15 39210059 39210164 -62170357 + MIR SINE MIR 33 146 -62 422 226 0 12 chr15 39210722 39210806 -62169715 - L2 LINE L2 -1 3312 3230 2455 85 0 3 chr15 39211009 39211316 -62169205 + AluY SINE Alu 1 306 -5 1016 208 30 10 chr15 39211676 39211873 -62168648 + MER58A DNA MER1_type 24 224 0 21 0 0 0 chr15 39211948 39211969 -62168552 + AT_rich Low_complexity Low_complexity 1 21 0 1736 161 0 11 chr15 39213457 39213737 -62166784 + AluJb SINE Alu 12 288 -24 575 254 96 32 chr15 39215271 39215491 -62165030 - L3b LINE CR1 -136 1447 1214 216 301 105 35 chr15 39216121 39216264 -62164257 - L3 LINE CR1 -437 1140 988 234 235 49 62 chr15 39218087 39218168 -62162353 + MIR SINE MIR 104 183 -79 471 262 157 26 chr15 39219445 39219636 -62160885 + MIR SINE MIR 41 256 -6 182 270 90 60 chr15 39219760 39219860 -62160661 + L2 LINE L2 3150 3252 -20 2046 122 7 7 chr15 39219963 39220258 -62160263 - AluSx SINE Alu -17 295 1 1302 101 0 6 chr15 39220450 39220628 -62159893 - AluSq SINE Alu -5 308 132 278 167 128 90 chr15 39222285 39222363 -62158158 + MIR SINE MIR 30 109 -99 2189 133 0 0 chr15 39223148 39223456 -62157065 + AluSx SINE Alu 1 308 -4 2040 133 0 25 chr15 39223466 39223783 -62156738 + AluSx SINE Alu 1 309 -3 2684 134 40 113 chr15 39224134 39224196 -62156325 + L1MD3 LINE L1 7388 7453 -542 1868 137 7 14 chr15 39224196 39224480 -62156041 + AluSx SINE Alu 9 290 -22 2684 134 40 113 chr15 39224480 39224619 -62155902 + L1MD3 LINE L1 7453 7601 -394 1549 146 16 84 chr15 39224619 39224927 -62155594 - AluJo SINE Alu -21 291 5 2684 134 40 113 chr15 39224927 39225380 -62155141 + L1MD3 LINE L1 7601 7995 0 393 214 77 17 chr15 39227479 39227596 -62152925 + L1ME2 LINE L1 6007 6130 -34 1732 188 3 3 chr15 39227962 39228265 -62152256 + AluJb SINE Alu 1 303 -9 602 291 20 31 chr15 39228329 39228525 -62151996 + MER117 DNA MER1_type 1 194 -3 1998 131 7 7 chr15 39228626 39228923 -62151598 + AluSx SINE Alu 1 297 -15 281 328 70 35 chr15 39229003 39229287 -62151234 + L2 LINE L2 1979 2272 -1042 453 289 74 65 chr15 39229324 39229691 -62150830 + L2 LINE L2 322 691 -2623 580 204 61 8 chr15 39229705 39229837 -62150684 + MIR SINE MIR 123 261 -1 553 165 43 35 chr15 39229912 39230027 -62150494 + MER103 DNA DNA 7 122 -44 2337 148 39 58 chr15 39230042 39230476 -62150045 + MSTC LTR MaLR 1 426 -2 1859 154 10 0 chr15 39230597 39230889 -62149632 + AluJb SINE Alu 7 301 -11 2194 50 0 0 chr15 39231074 39231335 -62149186 + AluY SINE Alu 41 301 -10 2219 117 13 0 chr15 39231412 39231720 -62148801 + AluSx SINE Alu 1 312 0 2078 103 10 32 chr15 39231982 39232292 -62148229 + AluSg SINE Alu 2 304 -6 200 311 122 28 chr15 39232644 39232824 -62147697 - MIR SINE MIR -46 216 20 1731 196 0 3 chr15 39232924 39233236 -62147285 + AluJb SINE Alu 1 311 -1 196 302 0 0 chr15 39234151 39234204 -62146317 - L2 LINE L2 -7 3306 3254 228 143 0 0 chr15 39235656 39235698 -62144823 - L1MB4 LINE L1 -1 6179 6138 2628 204 67 19 chr15 39235892 39236546 -62143975 - Tigger7 DNA MER2_type -8 2579 1 859 164 0 0 chr15 39236667 39236795 -62143726 - FLAM_C SINE Alu -5 128 1 237 159 0 0 chr15 39237969 39238013 -62142508 + (TG)n Simple_repeat Simple_repeat 2 45 0 488 242 91 50 chr15 39238878 39239076 -62141445 + L3 LINE CR1 974 1179 -398 1739 154 148 22 chr15 39239729 39240053 -62140468 + MLT1A1 LTR MaLR 1 365 0 2119 115 0 22 chr15 39240229 39240543 -62139978 + AluSx SINE Alu 1 307 -5 1790 149 3 23 chr15 39240945 39241247 -62139274 - AluSx SINE Alu -16 296 1 1640 152 72 0 chr15 39241247 39241523 -62138998 - AluJb SINE Alu -16 296 1 180 0 0 0 chr15 39241714 39241734 -62138787 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1596 180 7 27 chr15 39241738 39242032 -62138489 - AluJb SINE Alu -24 288 1 1493 197 34 24 chr15 39242131 39242426 -62138095 + AluJo SINE Alu 1 298 -14 1488 175 67 4 chr15 39242606 39242875 -62137646 + AluJo SINE Alu 5 290 -22 1200 169 69 159 chr15 39243065 39243498 -62137023 - MSTD LTR MaLR -2 394 1 1772 185 62 67 chr15 39243855 39244422 -62136099 + L1MC5 LINE L1 7348 7911 -50 1899 148 10 3 chr15 39244508 39244805 -62135716 + AluJb SINE Alu 2 300 -12 444 264 96 1 chr15 39245384 39245532 -62134989 + Charlie8 DNA MER1_type 115 248 -1169 2105 51 0 16 chr15 39245532 39245788 -62134733 + AluY SINE Alu 52 303 -8 444 264 96 1 chr15 39245788 39245821 -62134700 + Charlie8 DNA MER1_type 248 1400 -17 1961 166 0 3 chr15 39245861 39246169 -62134352 + AluJb SINE Alu 5 311 -1 1463 143 16 12 chr15 39246997 39247249 -62133272 - AluSx SINE Alu -5 307 55 352 141 0 16 chr15 39247259 39247333 -62133188 - Alu SINE Alu -1 300 243 2415 72 0 3 chr15 39247334 39247638 -62132883 - AluY SINE Alu -8 303 1 487 193 53 0 chr15 39247877 39247991 -62132530 - AluY SINE Alu -189 122 3 1998 158 0 7 chr15 39248109 39248407 -62132114 - AluSx SINE Alu -16 296 1 2496 91 0 0 chr15 39248424 39248733 -62131788 - AluSx SINE Alu -3 309 1 32 81 0 0 chr15 39248840 39248914 -62131607 + AT_rich Low_complexity Low_complexity 1 74 0 1896 156 3 13 chr15 39249017 39249332 -62131189 + AluJb SINE Alu 1 312 0 329 284 96 50 chr15 39249794 39250076 -62130445 + L2 LINE L2 1812 2106 -1208 361 350 55 27 chr15 39250109 39250292 -62130229 + MIR SINE MIR 20 207 -55 217 302 48 0 chr15 39250519 39250582 -62129939 + L2 LINE L2 2692 2757 -557 210 208 0 21 chr15 39251756 39251804 -62128717 + CT-rich Low_complexity Low_complexity 2 48 0 258 105 0 0 chr15 39252102 39252140 -62128381 + (A)n Simple_repeat Simple_repeat 1 38 0 203 206 0 48 chr15 39252696 39252759 -62127762 + CT-rich Low_complexity Low_complexity 2 61 0 989 179 0 0 chr15 39252827 39252983 -62127538 - AluSg/x SINE Alu -23 287 132 5710 32 3 0 chr15 39253127 39253756 -62126765 - L1PA3 LINE L1 0 6155 5525 1122 214 71 4 chr15 39253792 39254072 -62126449 + AluSq SINE Alu 1 299 -4 1234 143 0 5 chr15 39254786 39255002 -62125519 + AluY SINE Alu 92 306 -5 379 222 37 0 chr15 39255187 39255276 -62125245 + MIR SINE MIR 19 109 -126 491 149 0 0 chr15 39255366 39255433 -62125088 - AluS SINE Alu -17 294 228 1528 97 0 0 chr15 39255433 39255628 -62124893 - AluSq SINE Alu -118 195 1 251 308 0 13 chr15 39255632 39255710 -62124811 + MER94 DNA DNA 32 108 -26 659 133 10 0 chr15 39255710 39255808 -62124713 + AluSc SINE Alu 2 100 -209 1507 172 7 26 chr15 39256438 39256746 -62123775 - AluY SINE Alu -9 302 1 1809 160 26 16 chr15 39257069 39257375 -62123146 - AluJb SINE Alu -3 309 1 2200 130 0 0 chr15 39257506 39257806 -62122715 - AluSx SINE Alu -12 300 1 5500 44 3 2 chr15 39257843 39258473 -62122048 + L1PA3 LINE L1 5525 6155 0 900 205 0 0 chr15 39258616 39258772 -62121749 + AluSg/x SINE Alu 134 289 -23 2667 46 0 0 chr15 39259159 39259465 -62121056 + AluY SINE Alu 1 306 -5 379 161 32 0 chr15 39259650 39259712 -62120809 + MIR SINE MIR 19 82 -126 1688 118 122 11 chr15 39259828 39260091 -62120430 - AluSg1 SINE Alu -17 292 1 275 244 0 122 chr15 39260095 39260172 -62120349 + MER94 DNA DNA 32 92 -42 2167 93 3 14 chr15 39260172 39260462 -62120059 + AluSc SINE Alu 1 287 -22 275 244 0 122 chr15 39260462 39260499 -62120022 + MER94 DNA DNA 92 132 -2 2262 106 3 0 chr15 39260618 39260911 -62119610 - AluSp SINE Alu -19 294 1 2002 135 10 3 chr15 39260981 39261278 -62119243 - AluSx SINE Alu -13 299 1 2074 122 10 10 chr15 39261687 39261982 -62118539 + AluSx SINE Alu 1 295 -17 24 100 0 0 chr15 39263541 39263621 -62116900 + AT_rich Low_complexity Low_complexity 1 80 0 1723 82 0 9 chr15 39263730 39263950 -62116571 + AluSg/x SINE Alu 95 312 0 2014 150 0 0 chr15 39263985 39264300 -62116221 + AluSx SINE Alu 1 315 0 1115 204 4 113 chr15 39264309 39264398 -62116123 + L1ME1 LINE L1 5390 5487 -679 2188 104 3 23 chr15 39264398 39264697 -62115824 + AluSx SINE Alu 1 293 -19 1115 204 4 113 chr15 39264697 39264745 -62115776 + L1ME1 LINE L1 5487 5539 -627 1822 159 3 19 chr15 39264745 39265053 -62115468 + AluJo SINE Alu 1 303 -9 1115 204 4 113 chr15 39265053 39265292 -62115229 + L1ME1 LINE L1 5539 5716 -450 2025 141 3 0 chr15 39265304 39265594 -62114927 + AluSx SINE Alu 1 291 -21 724 207 56 19 chr15 39265693 39265906 -62114615 + L1ME1 LINE L1 5707 5927 -239 1241 179 5 14 chr15 39265906 39266129 -62114392 - AluJo SINE Alu -5 307 87 920 221 21 55 chr15 39266139 39266374 -62114147 + L1ME1 LINE L1 5933 6159 -7 1676 184 7 0 chr15 39266501 39266805 -62113716 - AluJo SINE Alu 0 308 3 454 252 91 69 chr15 39266956 39266989 -62113532 + L1ME4a LINE L1 5521 5552 -569 1514 170 85 18 chr15 39266989 39267272 -62113249 + AluJb SINE Alu 1 302 -10 454 252 91 69 chr15 39267272 39267467 -62113054 + L1ME4a LINE L1 5552 5760 -361 1914 150 17 10 chr15 39267467 39267767 -62112754 - AluJb SINE Alu -10 302 1 454 252 91 69 chr15 39267767 39267855 -62112666 + L1ME4a LINE L1 5760 5845 -276 2181 109 7 3 chr15 39267923 39268217 -62112304 - AluSx SINE Alu -17 295 1 961 202 103 24 chr15 39269099 39269351 -62111170 + AluJb SINE Alu 31 302 -10 414 268 84 53 chr15 39269351 39269546 -62110975 + L1ME4a LINE L1 5553 5761 -360 1977 147 17 7 chr15 39269546 39269845 -62110676 - AluJb SINE Alu -10 302 1 414 268 84 53 chr15 39269845 39269933 -62110588 + L1ME4a LINE L1 5761 5845 -276 1534 137 0 4 chr15 39270001 39270227 -62110294 - AluSg/x SINE Alu -17 293 69 231 53 0 0 chr15 39271221 39271259 -62109262 + Alu SINE Alu 264 301 0 1513 176 3 52 chr15 39271321 39271628 -62108893 - AluJo SINE Alu -10 302 11 494 135 63 79 chr15 39271742 39271797 -62108724 - L1MB5 LINE L1 0 6174 6120 2261 129 0 0 chr15 39271797 39272106 -62108415 + AluSx SINE Alu 1 309 -3 494 135 63 79 chr15 39272106 39272176 -62108345 - L1MB5 LINE L1 -54 6120 6051 605 218 156 31 chr15 39272538 39272763 -62107758 + HAL1 LINE L1 11 263 -2244 1919 232 76 34 chr15 39272799 39273446 -62107075 + HAL1 LINE L1 455 1128 -1379 1069 150 26 75 chr15 39273451 39273644 -62106877 + L1MB7 LINE L1 5626 5746 -432 2200 98 3 17 chr15 39273644 39273962 -62106559 + AluSp SINE Alu 1 314 0 1069 150 26 75 chr15 39273962 39274181 -62106340 + L1MB7 LINE L1 5746 5974 -204 1188 136 86 47 chr15 39274187 39274444 -62106077 + L1MB7 LINE L1 5915 6181 -3 1436 194 201 132 chr15 39274447 39274813 -62105708 + HAL1 LINE L1 1125 1464 -1043 217 0 61 0 chr15 39274822 39274855 -62105666 + (TTG)n Simple_repeat Simple_repeat 2 36 0 839 167 0 0 chr15 39274855 39274977 -62105544 - FLAM_C SINE Alu -187 125 1 1436 194 201 132 chr15 39274977 39275593 -62104928 + HAL1 LINE L1 1464 2331 -176 1710 170 17 30 chr15 39275593 39275893 -62104628 + AluJo SINE Alu 1 296 -16 1436 194 201 132 chr15 39275893 39275987 -62104534 + HAL1 LINE L1 2331 2417 -90 1861 141 10 39 chr15 39276080 39276386 -62104135 - AluJb SINE Alu -15 297 1 2126 125 7 3 chr15 39276811 39277107 -62103414 - AluSx SINE Alu -15 297 1 682 219 0 0 chr15 39277118 39277246 -62103275 - FLAM_C SINE Alu -4 129 2 1875 170 0 16 chr15 39277285 39277597 -62102924 + AluJb SINE Alu 1 307 -5 625 232 101 29 chr15 39277684 39277891 -62102630 - MIR SINE MIR -27 235 14 29 28 0 0 chr15 39278213 39278249 -62102272 + AT_rich Low_complexity Low_complexity 1 36 0 337 73 0 0 chr15 39278487 39278528 -62101993 + MER4A LTR ERV1 554 594 -70 21 0 0 0 chr15 39278528 39278549 -62101972 + AT_rich Low_complexity Low_complexity 1 21 0 590 201 21 28 chr15 39278698 39278842 -62101679 + L1MB7 LINE L1 6042 6184 0 320 239 82 37 chr15 39280319 39280453 -62100068 + L1ME4a LINE L1 5981 6120 -1 2230 112 0 3 chr15 39280455 39280750 -62099771 - AluSx SINE Alu -18 294 1 31 0 0 0 chr15 39280758 39280789 -62099732 + AT_rich Low_complexity Low_complexity 1 31 0 836 231 93 4 chr15 39281115 39281340 -62099181 + MIR SINE MIR 5 249 -13 5787 109 102 117 chr15 39281876 39283468 -62097053 - pTR5 LTR ERV1 0 2438 741 224 219 0 0 chr15 39283478 39283519 -62097002 + A-rich Low_complexity Low_complexity 3 43 0 2318 114 0 0 chr15 39285009 39285316 -62095205 + AluSx SINE Alu 5 311 -1 2458 88 0 0 chr15 39286041 39286349 -62094172 + AluY SINE Alu 1 308 -3 936 139 0 0 chr15 39287951 39288080 -62092441 + FLAM_C SINE Alu 1 129 -14 292 181 278 0 chr15 39288141 39288213 -62092308 + FLAM_A SINE Alu 23 114 -19 213 39 0 0 chr15 39288213 39288239 -62092282 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 2175 119 3 10 chr15 39289189 39289499 -62091022 + AluSx SINE Alu 1 308 -4 241 278 0 0 chr15 39289955 39290009 -62090512 + CT-rich Low_complexity Low_complexity 1 54 0 288 0 0 0 chr15 39290483 39290515 -62090006 + (CA)n Simple_repeat Simple_repeat 2 33 0 559 141 0 109 chr15 39290515 39290557 -62089964 - AluJo/FRAM SINE Alu -3 309 264 2480 75 0 0 chr15 39290557 39290852 -62089669 + AluSc SINE Alu 1 295 -14 559 141 0 109 chr15 39290852 39290937 -62089584 - AluJo/FRAM SINE Alu -48 264 196 2382 59 0 7 chr15 39290968 39291284 -62089237 + AluY SINE Alu 1 314 0 1906 142 14 17 chr15 39291376 39291509 -62089012 + AluSx SINE Alu 1 133 -179 2315 88 0 0 chr15 39291509 39291803 -62088718 + AluY SINE Alu 1 294 -17 1906 142 14 17 chr15 39291803 39291965 -62088556 + AluSx SINE Alu 133 295 -17 414 248 59 98 chr15 39291972 39292226 -62088295 + L1MC4 LINE L1 7634 7877 -165 351 0 0 0 chr15 39292256 39292295 -62088226 + (CA)n Simple_repeat Simple_repeat 2 40 0 299 232 49 37 chr15 39292471 39292553 -62087968 + L1ME4a LINE L1 5966 6048 -73 2336 240 77 64 chr15 39292843 39293180 -62087341 + L2 LINE L2 2069 2400 -913 265 200 0 100 chr15 39293180 39293240 -62087281 + FLAM_A SINE Alu 1 40 -93 2336 240 77 64 chr15 39293240 39293770 -62086751 + L2 LINE L2 2400 3019 -294 1727 151 4 0 chr15 39293770 39294028 -62086493 - AluJb SINE Alu -11 301 43 2336 240 77 64 chr15 39294028 39294307 -62086214 + L2 LINE L2 3019 3293 -20 2535 64 0 0 chr15 39294316 39294614 -62085907 + AluY SINE Alu 1 298 -13 1959 113 0 28 chr15 39294614 39294896 -62085625 + AluSx SINE Alu 33 307 -5 2223 98 10 0 chr15 39295116 39295423 -62085098 + AluSp SINE Alu 1 310 -3 187 317 0 0 chr15 39295917 39295958 -62084563 - L2 LINE L2 -98 3174 3134 209 329 0 0 chr15 39296160 39296230 -62084291 - L2 LINE L2 -296 2976 2907 2216 119 0 0 chr15 39296263 39296556 -62083965 - AluSq SINE Alu -20 293 1 4587 158 45 39 chr15 39296557 39296857 -62083664 - L1MD2 LINE L1 -163 6196 5899 1755 176 7 0 chr15 39296857 39297147 -62083374 - AluJo SINE Alu -16 296 5 4587 158 45 39 chr15 39297147 39297359 -62083162 - L1MD2 LINE L1 -460 5899 5690 2151 121 30 0 chr15 39297359 39297657 -62082864 - AluSx SINE Alu -5 307 1 4587 158 45 39 chr15 39297657 39298183 -62082338 - L1MD2 LINE L1 -669 5690 5147 398 140 0 0 chr15 39298242 39298299 -62082222 + AluS SINE Alu 1 57 -246 549 74 0 49 chr15 39298680 39298761 -62081760 - Alu SINE Alu -241 77 1 2296 108 3 0 chr15 39298897 39299194 -62081327 - AluSq SINE Alu -15 298 1 30 0 0 0 chr15 39299461 39299491 -62081030 + AT_rich Low_complexity Low_complexity 1 30 0 201 339 7 3 chr15 39301604 39301686 -62078835 - MER5B DNA MER1_type -27 162 69 2334 109 3 0 chr15 39301905 39302209 -62078312 + AluSq SINE Alu 1 305 -8 2351 95 0 31 chr15 39302822 39303139 -62077382 + AluSg SINE Alu 1 307 -3 2351 106 0 3 chr15 39303173 39303474 -62077047 + AluSx SINE Alu 1 300 -12 225 0 0 0 chr15 39303474 39303499 -62077022 + (GA)n Simple_repeat Simple_repeat 2 26 0 2251 70 52 3 chr15 39304294 39304581 -62075940 - AluY SINE Alu -10 301 1 1825 84 59 0 chr15 39304744 39304981 -62075540 + AluSp SINE Alu 47 297 -16 377 259 69 65 chr15 39305522 39305738 -62074783 - L1MC5 LINE L1 -42 7919 7703 2047 145 7 0 chr15 39305740 39306036 -62074485 + AluSx SINE Alu 1 298 -14 1982 136 9 22 chr15 39306052 39306186 -62074335 + AluSx SINE Alu 1 135 -177 2434 92 0 0 chr15 39306186 39306480 -62074041 + AluSg SINE Alu 1 294 -16 1982 136 9 22 chr15 39306480 39306661 -62073860 + AluSx SINE Alu 135 312 0 228 194 15 30 chr15 39307905 39307972 -62072549 + CT-rich Low_complexity Low_complexity 1 66 0 1001 179 0 0 chr15 39308037 39308193 -62072328 - AluSg/x SINE Alu -23 289 134 5460 32 3 0 chr15 39308337 39308966 -62071555 - L1PA3 LINE L1 0 6155 5525 2109 131 0 3 chr15 39309004 39309294 -62071227 + AluSx SINE Alu 1 289 -23 466 230 0 0 chr15 39309304 39309391 -62071130 + FRAM SINE Alu 17 103 -73 281 26 26 0 chr15 39309480 39309518 -62071003 + (TC)n Simple_repeat Simple_repeat 2 40 0 1553 171 4 25 chr15 39309530 39309805 -62070716 - AluJo SINE Alu -39 273 5 1962 134 21 7 chr15 39309905 39310064 -62070457 - AluSx SINE Alu -17 295 129 2325 100 0 0 chr15 39310064 39310363 -62070158 - AluSc SINE Alu -10 299 1 1962 134 21 7 chr15 39310363 39310494 -62070027 - AluSx SINE Alu -183 129 1 181 370 0 0 chr15 39312752 39312806 -62067715 - L2 LINE L2 -76 3196 3143 846 300 121 58 chr15 39313119 39313905 -62066616 + L1MEd LINE L1 805 1679 -4864 1850 134 30 24 chr15 39314174 39314472 -62066049 - AluSx SINE Alu -11 301 2 904 248 40 58 chr15 39314473 39314733 -62065788 - L1M4 LINE L1 -3063 3083 2831 2151 106 55 0 chr15 39314733 39315026 -62065495 - AluSx SINE Alu -1 311 3 904 248 40 58 chr15 39315026 39315144 -62065377 - L1M4 LINE L1 -3315 2831 2712 21 82 0 0 chr15 39315711 39315760 -62064761 + AT_rich Low_complexity Low_complexity 1 49 0 22 70 0 0 chr15 39316011 39316054 -62064467 + AT_rich Low_complexity Low_complexity 1 43 0 1202 282 54 41 chr15 39316334 39316908 -62063613 + MLT1G LTR MaLR 10 549 0 3016 181 49 19 chr15 39317143 39318150 -62062371 + MER61-int LTR ERV1 1409 4471 -2525 1757 152 29 37 chr15 39318151 39318499 -62062022 + THE1B LTR MaLR 1 345 -19 812 207 17 0 chr15 39318517 39318691 -62061830 + MER61-int LTR ERV1 1720 1896 -3321 2427 63 0 0 chr15 39318945 39319231 -62061290 + AluY SINE Alu 14 299 -12 189 0 0 0 chr15 39319257 39319278 -62061243 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 428 286 141 39 chr15 39319667 39319950 -62060571 + L1MC5 LINE L1 7574 7885 -76 608 134 0 0 chr15 39320225 39320307 -62060214 - AluS SINE Alu -229 83 2 436 131 60 0 chr15 39322203 39322287 -62058234 - AluJ/FLAM SINE Alu -222 90 2 32 81 0 0 chr15 39322391 39322465 -62058056 + AT_rich Low_complexity Low_complexity 1 74 0 2532 91 0 0 chr15 39322572 39322881 -62057640 + AluSx SINE Alu 1 309 -3 2215 119 0 7 chr15 39322898 39323192 -62057329 + AluSx SINE Alu 1 292 -20 1243 208 112 11 chr15 39323198 39323458 -62057063 + AluJo SINE Alu 1 286 -16 2268 117 0 0 chr15 39324233 39324531 -62055990 - AluSx SINE Alu -14 298 1 188 0 74 0 chr15 39324676 39324703 -62055818 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 444 344 9 45 chr15 39325004 39325228 -62055293 - L3b LINE CR1 -137 1446 1231 2308 82 13 7 chr15 39327870 39328173 -62052348 + AluSp SINE Alu 1 305 -8 2147 115 24 0 chr15 39329757 39330052 -62050469 + AluSx SINE Alu 1 302 -10 337 293 51 32 chr15 39330446 39330603 -62049918 - MIR SINE MIR -56 206 47 354 266 18 9 chr15 39337534 39337647 -62042874 + GA-rich Low_complexity Low_complexity 1 114 0 1281 258 36 57 chr15 39341618 39341724 -62038797 - L1MC/D LINE L1 -2031 5777 5670 1590 166 6 65 chr15 39341724 39342049 -62038472 + AluJo SINE Alu 1 306 -6 1281 258 36 57 chr15 39342049 39342109 -62038412 - L1MC/D LINE L1 -2138 5670 5610 2467 77 0 0 chr15 39342109 39342408 -62038113 + AluY SINE Alu 1 299 -12 1281 258 36 57 chr15 39342408 39342682 -62037839 - L1MC/D LINE L1 -2198 5610 5345 675 223 24 24 chr15 39342688 39342854 -62037667 - FRAM SINE Alu 0 166 1 1072 123 6 6 chr15 39342982 39343152 -62037369 - L1MB5 LINE L1 0 6174 6005 544 29 0 0 chr15 39343152 39343221 -62037300 + MER41B LTR ERV1 481 549 -86 1767 151 85 0 chr15 39343237 39343504 -62037017 - L1MB5 LINE L1 -156 6018 5716 1662 174 40 17 chr15 39343504 39343802 -62036719 - AluJo SINE Alu -7 305 1 1767 151 85 0 chr15 39343802 39343865 -62036656 - L1MB5 LINE L1 -458 5716 5660 2308 93 21 0 chr15 39343866 39344156 -62036365 - AluSg SINE Alu -14 296 1 1681 191 30 3 chr15 39344221 39344525 -62035996 + AluJb SINE Alu 1 312 0 26 64 0 0 chr15 39344610 39344657 -62035864 + AT_rich Low_complexity Low_complexity 1 47 0 1436 139 111 84 chr15 39344733 39344801 -62035720 - MER51A LTR ERV1 0 634 569 2422 94 0 0 chr15 39344801 39345100 -62035421 + AluSx SINE Alu 1 299 -13 1436 139 111 84 chr15 39345100 39345441 -62035080 - MER51A LTR ERV1 -65 569 1 2408 80 0 10 chr15 39356031 39356330 -62024191 + AluSx SINE Alu 1 296 -16 1157 149 0 11 chr15 39356330 39356511 -62024010 + AluSg/x SINE Alu 134 312 0 522 221 92 131 chr15 39356520 39356747 -62023774 - L1MC5 LINE L1 -252 7709 7475 1650 179 14 3 chr15 39356747 39357032 -62023489 - AluJb SINE Alu -24 288 1 522 221 92 131 chr15 39357032 39357054 -62023467 - L1MC5 LINE L1 -486 7475 7454 2261 116 3 22 chr15 39357054 39357372 -62023149 + AluSq SINE Alu 1 312 -1 522 221 92 131 chr15 39357372 39357860 -62022661 - L1MC5 LINE L1 -507 7454 7000 1823 158 4 7 chr15 39357933 39358211 -62022310 - AluJb SINE Alu -34 278 2 450 0 0 0 chr15 39358267 39358317 -62022204 + (TG)n Simple_repeat Simple_repeat 2 51 0 1360 199 17 0 chr15 39358317 39358558 -62021963 - AluJo SINE Alu -26 286 42 333 244 125 3 chr15 39358569 39358725 -62021796 - L1MC4 LINE L1 -869 6939 6758 581 193 90 14 chr15 39358737 39358882 -62021639 + MER106A DNA MER1_type 44 199 -37 1186 86 0 0 chr15 39358883 39359074 -62021447 + L1PA4 LINE L1 5991 6155 0 2568 248 105 49 chr15 39359116 39360132 -62020389 - L1MC4a LINE L1 -1036 6772 5815 1628 167 6 62 chr15 39360132 39360456 -62020065 + AluJo SINE Alu 1 306 -6 2568 248 105 49 chr15 39360456 39360516 -62020005 - L1MC4a LINE L1 -1993 5815 5760 2409 81 3 0 chr15 39360516 39360814 -62019707 + AluY SINE Alu 1 299 -12 2568 248 105 49 chr15 39360814 39361088 -62019433 - L1MC4a LINE L1 -2048 5760 5345 675 223 24 24 chr15 39361094 39361260 -62019261 - FRAM SINE Alu 0 166 1 1084 123 6 6 chr15 39361388 39361558 -62018963 - L1MB5 LINE L1 0 6174 6005 567 29 0 0 chr15 39361558 39361627 -62018894 + MER41B LTR ERV1 481 549 -86 1955 139 45 45 chr15 39361643 39361928 -62018593 - L1MB5 LINE L1 -156 6018 5731 1590 148 41 19 chr15 39361928 39362199 -62018322 - AluJo SINE Alu -25 287 11 1955 139 45 45 chr15 39362199 39362272 -62018249 - L1MB5 LINE L1 -442 5732 5660 1859 145 20 7 chr15 39362273 39362577 -62017944 - AluJb SINE Alu -4 308 1 4954 181 127 162 chr15 39362577 39363632 -62016889 - L1MB5 LINE L1 -567 5607 4517 362 120 0 0 chr15 39363632 39363682 -62016839 - AluJb SINE Alu -7 295 246 875 153 5 100 chr15 39363684 39363723 -62016798 - AluJb SINE Alu -139 173 132 1952 109 0 34 chr15 39363723 39364016 -62016505 - AluSg SINE Alu -19 291 9 875 153 5 100 chr15 39364016 39364166 -62016355 - AluJb SINE Alu -180 132 2 1584 154 9 72 chr15 39364167 39364364 -62016157 - AluJo SINE Alu -13 299 91 2178 97 3 7 chr15 39364364 39364674 -62015847 + AluSx SINE Alu 3 311 -1 294 29 0 0 chr15 39364674 39364709 -62015812 + (TA)n Simple_repeat Simple_repeat 2 36 0 1584 154 9 72 chr15 39364709 39364829 -62015692 - AluJo SINE Alu -219 93 1 4954 181 127 162 chr15 39364829 39365000 -62015521 - L1MB5 LINE L1 -1658 4516 4341 1575 167 39 0 chr15 39365000 39365281 -62015240 + AluJb SINE Alu 1 292 -20 4954 181 127 162 chr15 39365281 39365320 -62015201 - L1MB5 LINE L1 -1833 4341 4302 1766 166 0 0 chr15 39365320 39365598 -62014923 + AluJb SINE Alu 14 291 -21 770 180 0 0 chr15 39365602 39365724 -62014797 - FLAM_C SINE Alu -11 122 1 4954 181 127 162 chr15 39365724 39365747 -62014774 - L1MB5 LINE L1 -1875 4299 4277 1587 177 44 0 chr15 39365747 39365920 -62014601 - AluJb SINE Alu -5 307 114 183 42 0 0 chr15 39365920 39365944 -62014577 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1587 177 44 0 chr15 39365944 39366064 -62014457 - AluJb SINE Alu -198 114 1 4954 181 127 162 chr15 39366064 39366854 -62013667 - L1MB5 LINE L1 -1897 4277 3461 2088 115 3 3 chr15 39366854 39367150 -62013371 + AluSx SINE Alu 1 296 -16 4954 181 127 162 chr15 39367150 39367225 -62013296 - L1MB5 LINE L1 -2713 3461 3385 2563 24 0 3 chr15 39367225 39367521 -62013000 - AluYa5 SINE Alu -16 295 1 4954 181 127 162 chr15 39367521 39367596 -62012925 - L1MB5 LINE L1 -2789 3385 3309 1309 213 72 4 chr15 39367596 39367873 -62012648 - AluJb SINE Alu -16 296 1 4954 181 127 162 chr15 39367873 39368042 -62012479 - L1MB5 LINE L1 -2865 3309 3136 1336 114 111 97 chr15 39368042 39368340 -62012181 + AluJb SINE Alu 1 302 -10 4954 181 127 162 chr15 39368340 39368382 -62012139 - L1MB5 LINE L1 -3038 3136 3094 2006 122 24 0 chr15 39368382 39368678 -62011843 + AluSx SINE Alu 3 305 -7 4954 181 127 162 chr15 39368678 39368949 -62011572 - L1MB5 LINE L1 -3080 3094 2815 1491 182 0 40 chr15 39368949 39369245 -62011276 - AluJo SINE Alu -2 310 27 2331 81 0 3 chr15 39369255 39369564 -62010957 - AluY SINE Alu -3 308 1 4954 181 127 162 chr15 39369564 39369616 -62010905 - L1MB5 LINE L1 -3368 2806 2754 778 211 56 0 chr15 39369616 39369777 -62010744 + FRAM SINE Alu 1 166 -10 4954 181 127 162 chr15 39369777 39369945 -62010576 - L1MB5 LINE L1 -3420 2754 2582 599 188 34 17 chr15 39369945 39370062 -62010459 - FLAM_A SINE Alu -10 123 5 4954 181 127 162 chr15 39370062 39370217 -62010304 - L1MB5 LINE L1 -3592 2582 2234 354 107 0 0 chr15 39370237 39370293 -62010228 + (CA)n Simple_repeat Simple_repeat 1 56 0 33 25 0 0 chr15 39370398 39370438 -62010083 + AT_rich Low_complexity Low_complexity 1 40 0 1903 140 0 3 chr15 39370461 39370754 -62009767 - AluSq SINE Alu -19 294 3 21 0 0 0 chr15 39370771 39370792 -62009729 + AT_rich Low_complexity Low_complexity 1 21 0 1707 171 0 31 chr15 39370883 39371205 -62009316 - AluJb SINE Alu 0 312 1 1815 145 6 25 chr15 39371208 39371525 -62008996 - AluSx SINE Alu -1 311 1 21 82 0 0 chr15 39371525 39371574 -62008947 + AT_rich Low_complexity Low_complexity 1 49 0 2214 108 0 7 chr15 39371657 39371964 -62008557 + AluSc SINE Alu 1 305 -4 339 123 0 10 chr15 39371973 39372176 -62008345 + AluSx SINE Alu 1 297 -4 576 337 75 39 chr15 39372204 39372646 -62007875 - L1M4 LINE L1 -6061 481 24 251 317 58 8 chr15 39372662 39372782 -62007739 - L1 LINE L1 -1127 5019 4894 1975 120 0 7 chr15 39372783 39373074 -62007447 + AluSx SINE Alu 1 289 -23 472 230 0 0 chr15 39373084 39373171 -62007350 + FRAM SINE Alu 17 103 -73 1440 200 3 23 chr15 39373275 39373585 -62006936 - AluJo SINE Alu -4 308 5 1851 124 20 27 chr15 39373685 39373851 -62006670 - AluSx SINE Alu -16 296 131 2173 99 0 0 chr15 39373851 39374145 -62006376 - AluSc SINE Alu -15 294 1 1851 124 20 27 chr15 39374145 39374276 -62006245 - AluSx SINE Alu -181 131 1 1815 169 0 0 chr15 39381169 39381465 -61999056 - AluJo SINE Alu -16 296 1 741 222 25 6 chr15 39381465 39381627 -61998894 - MIR3 SINE MIR -11 197 33 2196 125 0 3 chr15 39382735 39383048 -61997473 - AluSx SINE Alu 0 312 1 834 167 0 0 chr15 39385476 39385602 -61994919 - FLAM_C SINE Alu -17 126 1 280 227 45 162 chr15 39386579 39386733 -61993788 - MIR SINE MIR -93 169 34 1718 157 26 26 chr15 39387782 39388088 -61992433 + AluJb SINE Alu 1 306 -6 437 104 0 52 chr15 39390718 39390795 -61989726 + L1MB3 LINE L1 6080 6152 -31 372 280 160 8 chr15 39390932 39391057 -61989464 + MIR SINE MIR 1 144 -118 748 259 128 71 chr15 39391084 39391550 -61988971 + MLT1H LTR MaLR 1 548 -1 1163 223 103 13 chr15 39391552 39391852 -61988669 - MER46C DNA MER2_type -11 327 1 391 241 36 0 chr15 39391852 39391935 -61988586 + MIR SINE MIR 156 241 -21 1537 146 13 52 chr15 39393885 39394194 -61986327 + AluJo SINE Alu 14 310 -2 735 135 4 2 chr15 39394233 39394494 -61986027 + AluSx SINE Alu 1 308 -2 300 293 45 94 chr15 39394739 39395005 -61985516 + L1ME3A LINE L1 5775 6027 -143 372 133 0 0 chr15 39395014 39395074 -61985447 + (CA)n Simple_repeat Simple_repeat 2 61 0 293 300 0 0 chr15 39395123 39395213 -61985308 + L1MC4 LINE L1 6614 6703 -1339 245 258 0 43 chr15 39395178 39395271 -61985250 - L1MC4 LINE L1 -1340 6702 6614 * 2191 115 0 13 chr15 39395284 39395460 -61985061 - AluSq SINE Alu -4 309 137 2118 108 0 25 chr15 39395460 39395776 -61984745 - AluSq SINE Alu -5 308 1 2191 115 0 13 chr15 39395776 39395912 -61984609 - AluSq SINE Alu -176 137 1 34 0 0 0 chr15 39396194 39396228 -61984293 + AT_rich Low_complexity Low_complexity 1 34 0 1894 138 3 0 chr15 39396228 39396524 -61983997 - AluSq SINE Alu -16 297 1 1972 114 41 0 chr15 39399509 39399799 -61980722 - AluSx SINE Alu -10 302 1 184 315 0 0 chr15 39400698 39400752 -61979769 - L2 LINE L2 -4 3309 3256 1733 162 3 13 chr15 39400760 39401069 -61979452 + AluJb SINE Alu 1 306 -6 1498 174 7 79 chr15 39401122 39401253 -61979268 + AluJo SINE Alu 2 141 -197 1307 220 0 14 chr15 39401253 39401539 -61978982 + AluJo SINE Alu 1 282 -30 2214 68 6 40 chr15 39401539 39401861 -61978660 + AluY SINE Alu 1 311 0 1951 108 10 24 chr15 39401863 39402158 -61978363 - AluSg SINE Alu -19 291 1 1498 174 7 79 chr15 39402158 39402381 -61978140 + AluJo SINE Alu 141 338 0 466 245 80 123 chr15 39402637 39402677 -61977844 + L1ME3A LINE L1 5619 5659 -511 1186 174 53 0 chr15 39402677 39402884 -61977637 + MER20 DNA MER1_type 2 219 0 466 245 80 123 chr15 39402884 39403243 -61977278 + L1ME3A LINE L1 5659 6001 -169 2136 101 0 7 chr15 39403637 39403944 -61976577 + AluSq SINE Alu 3 307 -6 431 255 9 19 chr15 39406417 39406523 -61973998 + MIR SINE MIR 48 152 -110 2123 105 0 10 chr15 39406528 39406833 -61973688 + AluSc SINE Alu 1 302 -7 1655 175 0 3 chr15 39406864 39407156 -61973365 + AluJb SINE Alu 12 302 -10 408 254 23 39 chr15 39412228 39412358 -61968163 + MER94 DNA DNA 7 134 0 571 180 99 0 chr15 39412928 39413072 -61967449 + MIR SINE MIR 93 252 -10 1669 125 143 0 chr15 39414075 39414347 -61966174 + AluJb SINE Alu 1 311 -1 423 277 84 26 chr15 39417203 39417358 -61963163 + MIR3 SINE MIR 14 177 -31 2157 117 16 23 chr15 39417466 39417775 -61962746 + AluJb SINE Alu 1 307 -5 1889 153 0 10 chr15 39417811 39418112 -61962409 - AluJb SINE Alu -14 298 1 528 144 31 21 chr15 39418172 39418269 -61962252 + U6 snRNA snRNA 2 99 -8 2258 109 0 3 chr15 39418269 39418573 -61961948 - AluY SINE Alu -8 303 1 191 310 17 0 chr15 39419259 39419317 -61961204 - MIR SINE MIR -118 90 32 321 303 22 0 chr15 39419458 39419547 -61960974 - MIR3 SINE MIR -7 201 111 245 313 0 21 chr15 39421265 39421361 -61959160 - MIR SINE MIR -67 195 102 298 265 26 43 chr15 39421443 39421510 -61959011 - MIR SINE MIR -30 232 166 1806 147 0 15 chr15 39421510 39421782 -61958739 - AluSg SINE Alu -40 270 3 298 265 26 43 chr15 39421782 39421831 -61958690 - MIR SINE MIR -96 166 118 2274 95 0 0 chr15 39421948 39422264 -61958257 + AluSg SINE Alu 1 316 0 1992 131 0 0 chr15 39422384 39422658 -61957863 + AluSx SINE Alu 39 312 0 517 307 213 31 chr15 39422827 39423114 -61957407 - L3 LINE CR1 -20 1557 1219 193 286 20 92 chr15 39423183 39423281 -61957240 - L3 LINE CR1 -542 1035 945 222 323 21 21 chr15 39423998 39424094 -61956427 - MIR SINE MIR -68 140 45 2147 80 8 0 chr15 39424109 39424371 -61956150 + AluSx SINE Alu 39 302 -10 805 293 36 9 chr15 39424480 39424702 -61955819 - MIR SINE MIR 0 262 35 382 208 50 40 chr15 39424772 39424873 -61955648 + L2 LINE L2 3163 3264 -8 1557 153 0 124 chr15 39425196 39425370 -61955151 + AluJo SINE Alu 1 114 -198 2214 108 0 16 chr15 39425370 39425677 -61954844 + AluSg SINE Alu 1 302 -8 1557 153 0 124 chr15 39425677 39425841 -61954680 + AluJo SINE Alu 114 297 -15 374 261 22 0 chr15 39426274 39426366 -61954155 + MIR3 SINE MIR 98 191 -17 261 0 0 0 chr15 39426629 39426658 -61953863 + (TG)n Simple_repeat Simple_repeat 2 30 0 2242 103 3 19 chr15 39428953 39429264 -61951257 - AluSg SINE Alu 0 310 5 597 173 0 0 chr15 39429300 39429404 -61951117 + U13 snRNA snRNA 1 104 0 284 204 0 19 chr15 39430403 39430457 -61950064 + L2 LINE L2 3201 3253 -19 * 474 254 42 68 chr15 39430424 39430619 -61949902 - MIR3 SINE MIR -50 212 20 539 260 202 36 chr15 39430748 39430971 -61949550 - MIR SINE MIR 0 262 3 905 218 86 25 chr15 39432735 39432978 -61947543 - MIR SINE MIR -2 260 3 297 0 0 0 chr15 39434287 39434320 -61946201 + (CAG)n Simple_repeat Simple_repeat 1 33 0 375 256 51 34 chr15 39434876 39434993 -61945528 - MIR3 SINE MIR -7 201 83 2061 113 16 35 chr15 39435225 39435536 -61944985 - AluSx SINE Alu -2 310 6 2131 133 7 7 chr15 39435536 39435845 -61944676 - AluSx SINE Alu -3 309 1 739 194 0 0 chr15 39436060 39436194 -61944327 - FRAM SINE Alu -3 173 40 468 314 0 0 chr15 39436203 39436324 -61944197 - MIR3 SINE MIR -30 178 58 583 249 101 43 chr15 39436579 39436666 -61943855 + MIR SINE MIR 41 122 -140 237 83 0 0 chr15 39436666 39436702 -61943819 + (TTG)n Simple_repeat Simple_repeat 2 37 0 583 249 101 43 chr15 39436702 39436823 -61943698 + MIR SINE MIR 122 261 -1 255 156 89 0 chr15 39436791 39436836 -61943685 - L2 LINE L2 -3 3310 3262 * 2224 101 0 13 chr15 39437490 39437797 -61942724 + AluSc SINE Alu 3 305 -4 1972 154 3 3 chr15 39437808 39438100 -61942421 - AluSx SINE Alu -20 292 1 282 172 31 0 chr15 39438199 39438263 -61942258 + MLT1J2 LTR MaLR 69 134 -316 1769 226 15 25 chr15 39438400 39438622 -61941899 - MER82 DNA MER2_type 0 653 435 2368 85 7 0 chr15 39438622 39438917 -61941604 - AluSc SINE Alu -12 297 1 1769 226 15 25 chr15 39438917 39439097 -61941424 - MER82 DNA MER2_type -218 435 255 1995 135 0 7 chr15 39439097 39439386 -61941135 + AluSx SINE Alu 1 287 -25 396 92 0 62 chr15 39439388 39439453 -61941068 + LTR8 LTR ERV1 543 603 -88 511 171 9 9 chr15 39439494 39439605 -61940916 + GA-rich Low_complexity Low_complexity 2 112 0 1577 109 14 0 chr15 39439708 39439929 -61940592 - AluSq SINE Alu -89 224 1 717 96 0 39 chr15 39440145 39440249 -61940272 - AluY SINE Alu -218 100 1 2318 108 3 0 chr15 39440385 39440682 -61939839 - AluSq SINE Alu -15 298 1 30 0 0 0 chr15 39440949 39440979 -61939542 + AT_rich Low_complexity Low_complexity 1 30 0 197 323 156 10 chr15 39443080 39443176 -61937345 - MER5B DNA MER1_type 0 189 69 2360 109 3 0 chr15 39443395 39443699 -61936822 + AluSq SINE Alu 1 305 -8 2371 95 0 31 chr15 39444313 39444630 -61935891 + AluSg SINE Alu 1 307 -3 2376 113 0 0 chr15 39444664 39444965 -61935556 + AluSx SINE Alu 1 301 -11 225 0 0 0 chr15 39444965 39444990 -61935531 + (GA)n Simple_repeat Simple_repeat 2 26 0 2206 74 53 3 chr15 39445786 39446071 -61934450 - AluY SINE Alu -10 301 3 849 162 0 21 chr15 39446073 39446215 -61934306 - FLAM_C SINE Alu -3 140 2 1736 154 9 72 chr15 39446216 39446413 -61934108 - AluJo SINE Alu -13 299 91 2330 97 3 7 chr15 39446413 39446723 -61933798 + AluSx SINE Alu 3 311 -1 294 29 0 0 chr15 39446723 39446758 -61933763 + (TA)n Simple_repeat Simple_repeat 1 35 0 1736 154 9 72 chr15 39446758 39446878 -61933643 - AluJo SINE Alu -219 93 1 2526 204 151 96 chr15 39446878 39447048 -61933473 - L1 LINE L1 -1655 4491 4332 1712 167 39 0 chr15 39447048 39447329 -61933192 + AluJb SINE Alu 1 292 -20 2526 204 151 96 chr15 39447329 39447368 -61933153 - L1 LINE L1 -1814 4332 4297 1906 166 0 0 chr15 39447368 39447646 -61932875 + AluJb SINE Alu 14 291 -21 790 180 0 0 chr15 39447650 39447772 -61932749 - FLAM_C SINE Alu -11 122 1 2526 204 151 96 chr15 39447772 39447795 -61932726 - L1 LINE L1 -1851 4295 4275 1730 177 44 0 chr15 39447795 39447968 -61932553 - AluJb SINE Alu -5 307 114 183 42 0 0 chr15 39447968 39447992 -61932529 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1730 177 44 0 chr15 39447992 39448112 -61932409 - AluJb SINE Alu -198 114 1 2526 204 151 96 chr15 39448112 39448902 -61931619 - L1 LINE L1 -1871 4275 3530 2237 115 3 3 chr15 39448902 39449198 -61931323 + AluSx SINE Alu 1 296 -16 2526 204 151 96 chr15 39449198 39449273 -61931248 - L1 LINE L1 -2616 3530 3461 2702 24 0 3 chr15 39449273 39449569 -61930952 - AluYa5 SINE Alu -16 295 1 2526 204 151 96 chr15 39449569 39449644 -61930877 - L1 LINE L1 -2685 3461 3392 1451 213 72 4 chr15 39449644 39449921 -61930600 - AluJb SINE Alu -16 296 1 2526 204 151 96 chr15 39449921 39450090 -61930431 - L1 LINE L1 -2754 3392 3234 1509 114 111 94 chr15 39450090 39450387 -61930134 + AluJb SINE Alu 1 302 -10 2526 204 151 96 chr15 39450387 39450429 -61930092 - L1 LINE L1 -2912 3234 3196 2156 122 24 0 chr15 39450429 39450725 -61929796 + AluSx SINE Alu 3 305 -7 2526 204 151 96 chr15 39450725 39450996 -61929525 - L1 LINE L1 -2950 3196 2941 1639 182 0 40 chr15 39450996 39451292 -61929229 - AluJo SINE Alu -2 310 27 2480 81 0 3 chr15 39451302 39451611 -61928910 - AluY SINE Alu -3 308 1 2526 204 151 96 chr15 39451611 39451662 -61928859 - L1 LINE L1 -3213 2933 2553 802 211 56 0 chr15 39451663 39451824 -61928697 + FRAM SINE Alu 1 166 -10 1013 203 50 53 chr15 39451827 39451992 -61928529 - L1 LINE L1 -3593 2553 2388 625 205 34 0 chr15 39451992 39452109 -61928412 - FLAM_A SINE Alu -8 125 5 1013 203 50 53 chr15 39452109 39452264 -61928257 - L1 LINE L1 -3758 2388 2234 354 107 0 0 chr15 39452284 39452340 -61928181 + (CA)n Simple_repeat Simple_repeat 1 56 0 33 25 0 0 chr15 39452445 39452485 -61928036 + AT_rich Low_complexity Low_complexity 1 40 0 2048 140 0 3 chr15 39452508 39452801 -61927720 - AluSq SINE Alu -19 294 3 21 0 0 0 chr15 39452818 39452839 -61927682 + AT_rich Low_complexity Low_complexity 1 21 0 1865 171 0 31 chr15 39452930 39453252 -61927269 - AluJb SINE Alu 0 312 1 1971 145 6 25 chr15 39453255 39453572 -61926949 - AluSx SINE Alu -1 311 1 21 82 0 0 chr15 39453572 39453621 -61926900 + AT_rich Low_complexity Low_complexity 1 49 0 2367 108 0 7 chr15 39453704 39454011 -61926510 + AluSc SINE Alu 1 305 -4 1115 129 0 18 chr15 39454020 39454183 -61926338 + AluSx SINE Alu 1 160 -152 521 344 72 36 chr15 39454251 39454693 -61925828 - L1M4 LINE L1 -6061 481 24 239 317 58 8 chr15 39454709 39454829 -61925692 - L1 LINE L1 -1127 5019 4894 2091 124 0 7 chr15 39454830 39455121 -61925400 + AluSx SINE Alu 1 289 -23 489 230 0 0 chr15 39455131 39455218 -61925303 + FRAM SINE Alu 17 103 -73 1593 201 3 19 chr15 39455322 39455631 -61924890 - AluJo SINE Alu -4 308 5 1960 133 20 14 chr15 39455731 39455891 -61924630 - AluSx SINE Alu -16 296 132 2281 107 0 0 chr15 39455891 39456189 -61924332 - AluSc SINE Alu -9 300 3 1960 133 20 14 chr15 39456189 39456322 -61924199 - AluSx SINE Alu -180 132 1 1972 168 0 0 chr15 39463218 39463515 -61917006 - AluJo SINE Alu -15 297 1 740 222 25 6 chr15 39463515 39463677 -61916844 - MIR3 SINE MIR -11 197 33 2246 130 0 3 chr15 39464784 39465083 -61915438 - AluSx SINE Alu -14 298 1 857 167 0 0 chr15 39467511 39467637 -61912884 - FLAM_C SINE Alu -17 126 1 276 227 45 162 chr15 39468614 39468768 -61911753 - MIR SINE MIR -93 169 34 1867 157 26 26 chr15 39469817 39470123 -61910398 + AluJb SINE Alu 1 306 -6 399 121 0 52 chr15 39472753 39472846 -61907675 + L1MB2 LINE L1 6068 6167 -16 370 280 160 8 chr15 39472967 39473092 -61907429 + MIR SINE MIR 1 144 -118 646 245 133 49 chr15 39473119 39473585 -61906936 + MLT1F LTR MaLR 1 541 -1 1092 223 103 13 chr15 39473587 39473887 -61906634 - MER46C DNA MER2_type -11 327 1 362 248 48 29 chr15 39473887 39473992 -61906529 + MIR SINE MIR 156 262 0 1676 148 13 51 chr15 39475920 39476231 -61904290 + AluJo SINE Alu 14 312 0 745 131 4 2 chr15 39476274 39476535 -61903986 + AluSx SINE Alu 1 310 -2 317 289 45 94 chr15 39476780 39477046 -61903475 + L1ME3A LINE L1 5775 6027 -143 315 161 0 0 chr15 39477055 39477111 -61903410 + (CA)n Simple_repeat Simple_repeat 2 57 0 290 300 0 0 chr15 39477160 39477250 -61903271 + L1MC4 LINE L1 6614 6703 -1339 283 281 0 0 chr15 39477215 39477304 -61903217 - L1MC4 LINE L1 -1340 6702 6614 * 2359 115 0 13 chr15 39477311 39477488 -61903033 - AluSq SINE Alu -3 310 137 2271 108 0 25 chr15 39477488 39477804 -61902717 - AluSq SINE Alu -5 308 1 2359 115 0 13 chr15 39477804 39477940 -61902581 - AluSq SINE Alu -176 137 1 35 0 0 0 chr15 39478498 39478533 -61901988 + AT_rich Low_complexity Low_complexity 1 35 0 2039 138 3 0 chr15 39478533 39478829 -61901692 - AluSq SINE Alu -16 297 1 2114 114 41 0 chr15 39481814 39482104 -61898417 - AluSx SINE Alu -10 302 1 1886 162 3 13 chr15 39483065 39483374 -61897147 + AluJb SINE Alu 1 306 -6 1532 171 7 79 chr15 39483426 39483558 -61896963 + AluJo SINE Alu 1 141 -194 1423 224 0 14 chr15 39483558 39483844 -61896677 + AluJo SINE Alu 1 282 -30 2376 65 6 40 chr15 39483844 39484166 -61896355 + AluY SINE Alu 1 311 0 2087 108 10 24 chr15 39484168 39484463 -61896058 - AluSg SINE Alu -19 291 1 1532 171 7 79 chr15 39484463 39484683 -61895838 + AluJo SINE Alu 141 335 0 485 250 75 118 chr15 39484939 39484979 -61895542 + L1ME3A LINE L1 5619 5659 -511 1189 179 53 0 chr15 39484979 39485186 -61895335 + MER20 DNA MER1_type 2 219 0 485 250 75 118 chr15 39485186 39485545 -61894976 + L1ME3A LINE L1 5659 6001 -169 2292 101 0 7 chr15 39485939 39486247 -61894274 + AluSq SINE Alu 3 308 -5 430 255 9 19 chr15 39488719 39488825 -61891696 + MIR SINE MIR 48 152 -110 2269 105 0 10 chr15 39488830 39489135 -61891386 + AluSc SINE Alu 1 302 -7 1827 185 0 3 chr15 39489155 39489458 -61891063 + AluJb SINE Alu 1 302 -10 373 261 23 39 chr15 39494536 39494666 -61885855 + MER94 DNA DNA 7 134 0 571 180 99 0 chr15 39495226 39495370 -61885151 + MIR SINE MIR 93 252 -10 1705 121 143 0 chr15 39496373 39496646 -61883875 + AluJb SINE Alu 1 312 0 441 284 84 26 chr15 39499499 39499654 -61880867 + MIR3 SINE MIR 14 177 -31 215 207 86 17 chr15 39499706 39499764 -61880757 - MER5A DNA MER1_type -5 184 123 2048 130 0 26 chr15 39499764 39500071 -61880450 + AluJo SINE Alu 1 299 -13 1908 156 0 10 chr15 39500105 39500406 -61880115 - AluJb SINE Alu -14 298 1 652 101 28 46 chr15 39500465 39500574 -61879947 + U6 snRNA snRNA 1 107 0 195 129 0 0 chr15 39500575 39500606 -61879915 + (A)n Simple_repeat Simple_repeat 1 31 0 230 241 319 0 chr15 39501159 39501275 -61879246 - MIR3 SINE MIR -24 184 32 321 303 22 0 chr15 39501412 39501501 -61879020 - MIR3 SINE MIR -7 201 111 180 0 0 0 chr15 39503192 39503212 -61877309 + (A)n Simple_repeat Simple_repeat 1 20 0 245 313 0 21 chr15 39503218 39503314 -61877207 - MIR SINE MIR -67 195 102 298 265 26 43 chr15 39503396 39503463 -61877058 - MIR SINE MIR -30 232 166 1806 147 0 15 chr15 39503463 39503735 -61876786 - AluSg SINE Alu -40 270 3 298 265 26 43 chr15 39503735 39503784 -61876737 - MIR SINE MIR -96 166 118 2274 95 0 0 chr15 39503901 39504217 -61876304 + AluSg SINE Alu 1 316 0 1992 131 0 0 chr15 39504337 39504611 -61875910 + AluSx SINE Alu 39 312 0 517 307 213 31 chr15 39504780 39505067 -61875454 - L3 LINE CR1 -20 1557 1219 193 286 20 92 chr15 39505136 39505234 -61875287 - L3 LINE CR1 -542 1035 945 2097 114 10 3 chr15 39506018 39506315 -61874206 + AluSx SINE Alu 2 300 -12 770 302 36 9 chr15 39506424 39506646 -61873875 - MIR SINE MIR 0 262 35 382 208 50 40 chr15 39506716 39506817 -61873704 + L2 LINE L2 3163 3264 -8 1541 156 0 124 chr15 39507140 39507314 -61873207 + AluJo SINE Alu 1 114 -198 2230 104 0 16 chr15 39507314 39507621 -61872900 + AluSg SINE Alu 1 302 -8 1541 156 0 124 chr15 39507621 39507785 -61872736 + AluJo SINE Alu 114 297 -15 374 261 22 0 chr15 39508218 39508310 -61872211 + MIR3 SINE MIR 98 191 -17 261 0 0 0 chr15 39508573 39508602 -61871919 + (TG)n Simple_repeat Simple_repeat 2 30 0 2242 103 3 19 chr15 39510897 39511208 -61869313 - AluSg SINE Alu 0 310 5 597 173 0 0 chr15 39511244 39511348 -61869173 + U13 snRNA snRNA 1 104 0 284 204 0 19 chr15 39512347 39512401 -61868120 + L2 LINE L2 3201 3253 -19 * 474 254 42 68 chr15 39512368 39512563 -61867958 - MIR3 SINE MIR -50 212 20 539 260 202 36 chr15 39512692 39512915 -61867606 - MIR SINE MIR 0 262 3 878 226 35 26 chr15 39514679 39514909 -61865612 - MIR SINE MIR -2 260 29 297 0 0 0 chr15 39516231 39516264 -61864257 + (CAG)n Simple_repeat Simple_repeat 1 33 0 327 248 53 35 chr15 39516820 39516933 -61863588 - MIR3 SINE MIR -7 201 87 2214 91 7 19 chr15 39517172 39517481 -61863040 - AluSx SINE Alu 0 312 8 2029 140 3 7 chr15 39517484 39517784 -61862737 - AluSx SINE Alu -13 299 1 718 194 0 0 chr15 39518000 39518134 -61862387 - FRAM SINE Alu -3 173 40 433 306 0 0 chr15 39518143 39518264 -61862257 - MIR3 SINE MIR -30 178 58 535 246 78 28 chr15 39518519 39518606 -61861915 + MIR SINE MIR 41 122 -140 237 83 0 0 chr15 39518606 39518642 -61861879 + (TTG)n Simple_repeat Simple_repeat 2 37 0 535 246 78 28 chr15 39518642 39518733 -61861788 + MIR SINE MIR 122 228 -34 235 156 89 0 chr15 39518731 39518776 -61861745 - L2 LINE L2 -3 3310 3262 * 1970 138 3 10 chr15 39519427 39519724 -61860797 - AluSx SINE Alu -17 295 1 319 172 31 0 chr15 39519823 39519887 -61860634 + MLT1J2 LTR MaLR 69 134 -316 340 270 49 87 chr15 39519944 39520024 -61860497 + MLT1I LTR MaLR 242 324 -85 3186 202 10 46 chr15 39520024 39520246 -61860275 - MER82 DNA MER2_type 0 653 425 2220 96 10 0 chr15 39520246 39520538 -61859983 - AluSc SINE Alu -14 295 1 3186 202 10 46 chr15 39520538 39520724 -61859797 - MER82 DNA MER2_type -228 425 234 2403 94 0 0 chr15 39520724 39521021 -61859500 + AluSx SINE Alu 3 299 -13 3186 202 10 46 chr15 39521021 39521288 -61859233 - MER82 DNA MER2_type -419 234 1 340 270 49 87 chr15 39521288 39521424 -61859097 + MLT1I LTR MaLR 324 409 0 2409 92 0 0 chr15 39521689 39521992 -61858529 + AluY SINE Alu 1 303 -8 2095 112 10 3 chr15 39521994 39522289 -61858232 - AluSp SINE Alu -16 297 1 193 250 19 0 chr15 39522441 39522493 -61858028 - L2 LINE L2 -923 2391 2339 1266 149 0 10 chr15 39522493 39522688 -61857833 + AluJo SINE Alu 95 287 -25 333 237 52 21 chr15 39522789 39522886 -61857635 + L2 LINE L2 3209 3308 -5 1976 129 7 7 chr15 39522993 39523280 -61857241 + AluSx SINE Alu 1 287 -25 396 103 0 52 chr15 39523289 39523347 -61857174 + LTR8 LTR ERV1 549 603 -88 252 246 0 0 chr15 39523348 39523417 -61857104 + GA-rich Low_complexity Low_complexity 1 69 0 1352 112 93 0 chr15 39523560 39523765 -61856756 - AluSq SINE Alu -89 224 1 203 191 0 48 chr15 39523797 39523839 -61856682 - MER5A DNA MER1_type -85 104 65 2317 97 0 0 chr15 39523840 39524128 -61856393 - AluSg SINE Alu -22 288 1 2232 61 41 10 chr15 39524138 39524432 -61856089 - AluY SINE Alu -8 303 1 1503 156 0 35 chr15 39524519 39524775 -61855746 - AluJb SINE Alu -55 257 11 734 182 8 0 chr15 39524801 39524922 -61855599 - FLAM_C SINE Alu -20 123 2 883 158 24 91 chr15 39525206 39525239 -61855282 - L1MB7 LINE L1 -19 6165 6131 405 0 0 0 chr15 39525239 39525284 -61855237 + (TG)n Simple_repeat Simple_repeat 2 46 0 1591 133 75 50 chr15 39525284 39525562 -61854959 - AluJb SINE Alu -27 285 1 883 158 24 91 chr15 39525562 39525594 -61854927 - L1MB7 LINE L1 -52 6132 6099 2278 95 3 22 chr15 39525594 39525910 -61854611 - AluSq SINE Alu -3 310 1 883 158 24 91 chr15 39525910 39526096 -61854425 - L1MB7 LINE L1 -85 6099 5929 765 219 33 16 chr15 39526380 39526563 -61853958 - L1ME3 LINE L1 -10 6152 5967 365 214 0 87 chr15 39526889 39526992 -61853529 + MIR SINE MIR 47 140 -122 420 313 50 6 chr15 39527129 39527308 -61853213 + L3 LINE CR1 1382 1568 -9 827 195 52 0 chr15 39527687 39527841 -61852680 - FRAM SINE Alu -15 161 1 1332 126 0 16 chr15 39527938 39528129 -61852392 - AluSg/x SINE Alu -33 277 90 2054 126 3 3 chr15 39528797 39529091 -61851430 - AluSc SINE Alu -15 294 1 200 255 0 0 chr15 39530305 39530352 -61850169 + GA-rich Low_complexity Low_complexity 2 48 0 1591 211 103 40 chr15 39530664 39531224 -61849297 + L2 LINE L2 2457 3063 -250 1613 133 22 67 chr15 39531224 39531539 -61848982 + AluSx SINE Alu 1 301 -11 1591 211 103 40 chr15 39531539 39531748 -61848773 + L2 LINE L2 3063 3258 -55 1703 185 26 7 chr15 39531770 39532072 -61848449 - AluJb SINE Alu 0 312 5 681 234 0 58 chr15 39532083 39532254 -61848267 - AluJo SINE Alu -25 287 127 1415 227 52 43 chr15 39532347 39532810 -61847711 - MLT1C LTR MaLR 0 467 1 2325 108 0 0 chr15 39533948 39534253 -61846268 - AluSx SINE Alu -7 305 1 2066 150 16 0 chr15 39534379 39534685 -61845836 - AluSx SINE Alu -1 311 1 33 56 0 0 chr15 39534877 39534931 -61845590 + AT_rich Low_complexity Low_complexity 1 54 0 813 103 0 0 chr15 39535194 39535301 -61845220 - U6 snRNA snRNA 0 107 1 358 230 44 18 chr15 39535399 39535499 -61845022 - MIR SINE MIR -10 252 147 2268 110 3 16 chr15 39535499 39535816 -61844705 - AluSq SINE Alu 0 313 1 358 230 44 18 chr15 39535816 39535828 -61844693 - MIR SINE MIR -115 147 137 2344 101 0 0 chr15 39535841 39536149 -61844372 - AluSc SINE Alu -1 308 1 2161 82 3 73 chr15 39536812 39537127 -61843394 - AluSg SINE Alu -17 293 1 418 293 13 7 chr15 39537513 39537663 -61842858 + MIR SINE MIR 97 247 -15 2280 82 14 0 chr15 39538656 39538975 -61841546 - AluSp SINE Alu 0 323 1 1411 181 58 29 chr15 39539282 39539559 -61840962 - AluJb SINE Alu -26 286 2 580 198 62 62 chr15 39539616 39539665 -61840856 + MER104 DNA Tc2 16 64 -1834 2138 84 0 0 chr15 39539665 39539926 -61840595 - AluSc SINE Alu -14 295 35 580 198 62 62 chr15 39539926 39540038 -61840483 + MER104 DNA Tc2 63 177 -3 1811 125 55 14 chr15 39540909 39541198 -61839323 - AluSx SINE Alu -11 301 1 814 137 0 0 chr15 39541414 39541538 -61838983 - FRAM SINE Alu -15 161 38 2021 132 56 0 chr15 39542055 39542374 -61838147 + MER1B DNA MER1_type 1 337 0 2020 138 10 0 chr15 39542627 39542916 -61837605 - AluJb SINE Alu -18 294 3 1832 147 7 27 chr15 39543067 39543360 -61837161 + AluJb SINE Alu 1 287 -25 1780 127 4 4 chr15 39543870 39544122 -61836399 - AluSq SINE Alu -60 253 2 2184 119 0 7 chr15 39544269 39544579 -61835942 - AluSx SINE Alu -4 308 1 208 244 11 56 chr15 39546216 39546306 -61834215 + (CCCCAG)n Simple_repeat Simple_repeat 2 87 0 25 51 0 0 chr15 39546792 39546831 -61833690 + GC_rich Low_complexity Low_complexity 1 39 0 43350 34 22 4 chr15 39547456 39553484 -61827037 + L1PA3 LINE L1 20 6155 0 207 0 0 0 chr15 39553547 39553570 -61826951 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2226 111 3 0 chr15 39554360 39554658 -61825863 + AluSp SINE Alu 1 299 -14 2112 112 14 7 chr15 39554918 39555214 -61825307 - AluSq SINE Alu -15 298 1 1418 106 5 0 chr15 39555216 39555404 -61825117 - AluSg/x SINE Alu -12 298 110 972 186 20 10 chr15 39555787 39555991 -61824530 - AluSq SINE Alu -107 206 1 2040 94 0 0 chr15 39556074 39556328 -61824193 - AluSg SINE Alu -56 254 1 22 0 0 0 chr15 39556335 39556357 -61824164 + AT_rich Low_complexity Low_complexity 1 22 0 280 265 0 0 chr15 39556372 39556440 -61824081 - MER5A DNA MER1_type -113 76 9 2424 82 10 0 chr15 39556573 39556877 -61823644 - AluSq SINE Alu -6 307 1 802 188 32 11 chr15 39556877 39557063 -61823458 - L1MB7 LINE L1 -66 6118 5929 778 213 33 16 chr15 39557347 39557530 -61822991 - L1ME3 LINE L1 -10 6152 5967 365 214 0 87 chr15 39557856 39557959 -61822562 + MIR SINE MIR 47 140 -122 420 313 50 6 chr15 39558096 39558275 -61822246 + L3 LINE CR1 1382 1568 -9 810 188 52 0 chr15 39558654 39558808 -61821713 - FRAM SINE Alu -15 161 1 462 18 0 0 chr15 39558902 39558957 -61821564 + (TA)n Simple_repeat Simple_repeat 2 56 0 2231 94 0 26 chr15 39558957 39559265 -61821256 - AluSx SINE Alu -12 300 1 2174 109 3 3 chr15 39559932 39560226 -61820295 - AluSc SINE Alu -15 294 1 1732 217 88 33 chr15 39561784 39562350 -61818171 + L2 LINE L2 2457 3068 -245 1967 107 7 58 chr15 39562350 39562660 -61817861 + AluSx SINE Alu 1 294 -18 1732 217 88 33 chr15 39562660 39562863 -61817658 + L2 LINE L2 3068 3258 -55 1638 207 20 0 chr15 39562885 39563185 -61817336 - AluJb SINE Alu -2 310 5 758 211 0 58 chr15 39563196 39563367 -61817154 - AluJo SINE Alu -25 287 127 1392 229 52 43 chr15 39563460 39563923 -61816598 - MLT1C LTR MaLR 0 467 1 228 67 0 0 chr15 39564102 39564132 -61816389 + (A)n Simple_repeat Simple_repeat 1 30 0 264 30 0 0 chr15 39565080 39565113 -61815408 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 1947 133 7 31 chr15 39565113 39565407 -61815114 - AluSx SINE Alu -25 287 1 1981 132 16 36 chr15 39565574 39565878 -61814643 - AluSx SINE Alu -13 299 2 34 42 0 0 chr15 39566071 39566119 -61814402 + AT_rich Low_complexity Low_complexity 1 48 0 813 103 0 0 chr15 39566397 39566504 -61814017 - U6 snRNA snRNA 0 107 1 339 257 57 0 chr15 39566602 39566707 -61813814 - MIR SINE MIR -10 252 142 2344 91 3 3 chr15 39566713 39567009 -61813512 - AluSq SINE Alu -17 296 1 2417 98 0 0 chr15 39567023 39567330 -61813191 - AluSc SINE Alu -2 307 1 2212 90 3 48 chr15 39567985 39568295 -61812226 - AluSg SINE Alu -14 296 1 447 287 13 7 chr15 39568681 39568831 -61811690 + MIR SINE MIR 97 247 -15 1546 159 58 29 chr15 39570115 39570392 -61810129 - AluJo SINE Alu -26 286 2 298 140 105 0 chr15 39570444 39570501 -61810020 + HsTC2 DNA Tc2 2 64 -1834 649 90 0 3 chr15 39570501 39570714 -61809807 - AluSc SINE Alu -7 302 35 436 216 90 18 chr15 39570715 39570826 -61809695 + MER104 DNA Tc2 59 177 -3 1743 147 55 14 chr15 39571698 39571990 -61808531 - AluSx SINE Alu -8 304 1 2487 78 0 0 chr15 39572031 39572337 -61808184 + AluY SINE Alu 1 306 -5 724 157 0 0 chr15 39572522 39572643 -61807878 - FRAM SINE Alu -15 161 41 2465 81 0 0 chr15 39572809 39573118 -61807403 + AluY SINE Alu 1 309 -2 2028 132 56 0 chr15 39573498 39573817 -61806704 + MER1B DNA MER1_type 1 337 0 2002 140 11 0 chr15 39574070 39574355 -61806166 - AluJb SINE Alu -22 290 3 1749 181 0 17 chr15 39574506 39574804 -61805717 + AluJb SINE Alu 1 293 -19 2474 64 0 3 chr15 39575097 39575393 -61805128 + AluY SINE Alu 1 295 -16 1858 113 98 4 chr15 39575608 39575882 -61804639 - AluSq SINE Alu -12 301 2 2219 113 3 6 chr15 39576025 39576336 -61804185 - AluSx SINE Alu -2 310 1 225 0 0 0 chr15 39577661 39577686 -61802835 + (A)n Simple_repeat Simple_repeat 1 25 0 2304 61 0 0 chr15 39577688 39577993 -61802528 + AluY SINE Alu 3 307 0 214 200 7 103 chr15 39578376 39578521 -61802000 + (CCCCG)n Simple_repeat Simple_repeat 1 131 0 2284 92 3 3 chr15 39580414 39580708 -61799813 + AluSp SINE Alu 1 294 -19 2271 101 3 7 chr15 39580992 39581289 -61799232 - AluSq SINE Alu -17 296 1 2108 86 18 0 chr15 39581294 39581607 -61798914 - AluSx SINE Alu 0 318 1 914 71 9 0 chr15 39581751 39581864 -61798657 + AluSq/x SINE Alu 22 135 -177 1614 162 6 60 chr15 39581864 39582179 -61798342 + AluJb SINE Alu 1 298 -14 522 53 53 0 chr15 39582294 39582369 -61798152 - AluSg/x SINE Alu -17 292 214 855 133 0 73 chr15 39582369 39582534 -61797987 - AluSq SINE Alu -160 153 1 608 164 14 7 chr15 39582712 39582852 -61797669 + AluSc SINE Alu 1 141 -168 2333 86 7 0 chr15 39583270 39583562 -61796959 + AluY SINE Alu 1 294 -17 2224 114 0 3 chr15 39583627 39583925 -61796596 + AluSg SINE Alu 1 297 -13 329 245 75 0 chr15 39585118 39585212 -61795309 - HsTC2 DNA Tc2 0 1898 1798 2076 108 0 0 chr15 39585872 39586140 -61794381 - AluSx SINE Alu -30 282 15 2435 93 0 0 chr15 39586890 39587190 -61793331 + AluSc SINE Alu 1 300 -9 1274 164 134 22 chr15 39587237 39587505 -61793016 + AluJo SINE Alu 1 298 -14 1361 160 143 0 chr15 39587506 39587744 -61792777 + AluJb SINE Alu 24 295 -17 2214 97 0 7 chr15 39587820 39588110 -61792411 + AluSx SINE Alu 1 288 -24 2465 77 0 0 chr15 39588408 39588708 -61791813 + AluSq SINE Alu 1 300 -13 386 267 127 0 chr15 39588716 39588866 -61791655 + MIR SINE MIR 71 239 -23 197 306 0 32 chr15 39589207 39589269 -61791252 - MER5B DNA MER1_type -104 74 15 446 244 36 65 chr15 39589759 39589927 -61790594 - L2 LINE L2 0 3313 3151 459 225 126 9 chr15 39589931 39590042 -61790479 + FLAM_A SINE Alu 1 124 -9 2635 40 0 0 chr15 39590053 39590350 -61790171 + AluY SINE Alu 1 297 -14 2139 106 0 11 chr15 39590355 39590638 -61789883 + AluSg SINE Alu 1 280 -30 890 117 21 163 chr15 39590683 39590739 -61789782 + L1MB3 LINE L1 5444 5506 -677 2282 78 27 0 chr15 39590739 39591035 -61789486 + AluSp SINE Alu 1 304 -9 890 117 21 163 chr15 39591035 39591153 -61789368 + L1MB3 LINE L1 5506 5639 -544 2075 131 3 16 chr15 39591153 39591465 -61789056 + AluSx SINE Alu 1 308 -4 2116 136 7 3 chr15 39591470 39591779 -61788742 + AluSx SINE Alu 1 310 -2 2260 88 0 0 chr15 39591785 39592091 -61788430 + AluY SINE Alu 1 306 0 890 117 21 163 chr15 39592091 39592140 -61788381 + L1MB3 LINE L1 5594 5648 -535 758 220 105 31 chr15 39592143 39592334 -61788187 - MER6B DNA MER2_type -5 205 1 970 154 24 12 chr15 39592347 39592516 -61788005 + L1MB3 LINE L1 5679 5849 -334 2247 78 7 36 chr15 39592580 39592887 -61787634 + AluSq SINE Alu 1 298 -15 1801 162 3 3 chr15 39592898 39593195 -61787326 + AluJo SINE Alu 14 310 -2 278 176 88 77 chr15 39593195 39593286 -61787235 + L1MC/D LINE L1 5726 5817 -1991 2550 43 0 10 chr15 39593307 39593607 -61786914 - AluY SINE Alu -14 297 1 21 36 0 0 chr15 39593607 39593635 -61786886 + AT_rich Low_complexity Low_complexity 1 28 0 2378 79 3 13 chr15 39593734 39594037 -61786484 + AluY SINE Alu 1 300 -11 2470 74 3 0 chr15 39595007 39595306 -61785215 + AluSp SINE Alu 2 301 -12 2042 134 0 0 chr15 39596046 39596329 -61784192 - AluSx SINE Alu -29 283 1 221 405 82 9 chr15 39596641 39596873 -61783648 - L2 LINE L2 -342 2972 2724 790 107 90 0 chr15 39596874 39596996 -61783525 - MER85 DNA T2_type -6 133 1 2214 126 0 0 chr15 39597242 39597544 -61782977 - AluSq SINE Alu -11 302 1 278 302 40 40 chr15 39597569 39597695 -61782826 - MIR3 SINE MIR -48 160 35 1705 166 3 18 chr15 39597885 39598168 -61782353 + AluJo SINE Alu 15 293 -19 25 0 0 0 chr15 39598910 39598935 -61781586 + AT_rich Low_complexity Low_complexity 1 25 0 2340 102 3 6 chr15 39599844 39600157 -61780364 + AluSp SINE Alu 1 312 -1 2202 110 20 0 chr15 39600275 39600574 -61779947 + AluSg SINE Alu 5 309 -1 895 114 14 57 chr15 39600600 39600740 -61779781 + AluJo SINE Alu 1 134 -178 2205 87 7 7 chr15 39601525 39601813 -61778708 + AluSq SINE Alu 9 296 -17 354 198 0 6 chr15 39601968 39602040 -61778481 - AluSp SINE Alu -107 196 136 441 75 0 0 chr15 39602875 39602928 -61777593 - AluSg/x SINE Alu -142 170 118 2129 73 69 7 chr15 39603435 39603724 -61776797 - AluSp SINE Alu -6 307 1 501 209 310 6 chr15 39604365 39604523 -61775998 + MER3 DNA MER1_type 4 209 0 2127 81 10 52 chr15 39606177 39606487 -61774034 + AluY SINE Alu 1 297 -14 2000 154 0 3 chr15 39606495 39606788 -61773733 + AluSx SINE Alu 1 292 -20 1210 199 128 8 chr15 39607626 39607892 -61772629 + AluJo SINE Alu 1 298 -14 331 131 98 0 chr15 39607892 39607953 -61772568 + AluJo SINE Alu 58 124 -178 2531 64 0 0 chr15 39610740 39611038 -61769483 - AluY SINE Alu -13 298 1 1091 148 12 0 chr15 39611167 39611329 -61769192 + AluJo SINE Alu 134 297 -15 306 0 0 0 chr15 39611357 39611391 -61769130 + (A)n Simple_repeat Simple_repeat 1 34 0 2045 127 7 7 chr15 39611393 39611684 -61768837 + AluSx SINE Alu 1 291 -21 1071 250 120 20 chr15 39611687 39612147 -61768374 - L2 LINE L2 -1536 1778 1273 1597 197 65 34 chr15 39612188 39612263 -61768258 + Charlie4a DNA MER1_type 1 72 -1889 1731 169 3 3 chr15 39612263 39612568 -61767953 - AluJo SINE Alu 0 305 1 1597 197 65 34 chr15 39612568 39612907 -61767614 + Charlie4a DNA MER1_type 72 429 -79 383 162 0 14 chr15 39612911 39612985 -61767536 - AluSp/q SINE Alu 0 303 231 2151 117 3 3 chr15 39613086 39613376 -61767145 - AluSx SINE Alu -22 290 1 1242 101 16 16 chr15 39614102 39614291 -61766230 - L1MA4A LINE L1 -64 6239 6051 213 139 0 0 chr15 39614296 39614339 -61766182 + (A)n Simple_repeat Simple_repeat 1 43 0 612 261 194 11 chr15 39614547 39614920 -61765601 + L1MC4a LINE L1 5524 5649 -472 1254 111 0 0 chr15 39615051 39615213 -61765308 - AluSg/x SINE Alu -16 296 135 584 287 100 17 chr15 39615480 39615710 -61764811 + MIR SINE MIR 2 250 -12 1127 271 31 3 chr15 39615716 39615943 -61764578 + L1ME1 LINE L1 5816 6056 -110 2251 112 0 7 chr15 39615943 39616247 -61764274 - AluSx SINE Alu -10 302 1 1127 271 31 3 chr15 39616247 39616340 -61764181 + L1ME1 LINE L1 6056 6145 -21 1732 161 18 3 chr15 39616341 39616626 -61763895 - AluJb SINE Alu -23 289 1 2086 178 55 29 chr15 39616627 39616980 -61763541 - L1M4 LINE L1 -447 5731 5362 2246 88 7 0 chr15 39616980 39617288 -61763233 - AluSx SINE Alu 0 312 3 2086 178 55 29 chr15 39617288 39617389 -61763132 - L1M4 LINE L1 -816 5362 5265 1794 156 0 3 chr15 39617423 39617718 -61762803 + AluJb SINE Alu 1 294 -18 2166 121 0 0 chr15 39617725 39618038 -61762483 + AluSq SINE Alu 1 313 0 1369 93 25 5 chr15 39618040 39618244 -61762277 + L1MB8 LINE L1 5742 5949 -229 2058 88 4 4 chr15 39618252 39618563 -61761958 + AluSg SINE Alu 8 318 0 1191 123 0 0 chr15 39618563 39618734 -61761787 + AluSq SINE Alu 133 303 -10 1486 184 28 18 chr15 39618844 39619127 -61761394 - AluJb SINE Alu -26 286 1 851 143 8 0 chr15 39619130 39619263 -61761258 - AluJo SINE Alu -178 134 1 1022 230 22 9 chr15 39619353 39619579 -61760942 - MIR SINE MIR -21 241 13 2311 57 0 0 chr15 39620320 39620647 -61759874 + AluY SINE Alu 1 327 0 23 0 0 0 chr15 39620857 39620880 -61759641 + AT_rich Low_complexity Low_complexity 1 23 0 621 224 236 69 chr15 39621000 39621081 -61759440 - HAL1b LINE L1 -7 1341 1275 2249 73 7 0 chr15 39621081 39621369 -61759152 + AluSg1 SINE Alu 1 290 -19 621 224 236 69 chr15 39621369 39621719 -61758802 - HAL1b LINE L1 -73 1275 838 1557 93 0 0 chr15 39621723 39621928 -61758593 - AluSg/x SINE Alu -13 297 93 1924 114 11 4 chr15 39621983 39622256 -61758265 - AluSx SINE Alu -37 275 1 1333 207 3 39 chr15 39622659 39622968 -61757553 - AluJo SINE Alu -14 298 1 450 187 48 72 chr15 39622969 39623058 -61757463 + L1MB7 LINE L1 6023 6108 -76 1825 131 7 23 chr15 39623058 39623194 -61757327 + AluSx SINE Alu 1 138 -174 2006 106 3 7 chr15 39623194 39623487 -61757034 + AluSg1 SINE Alu 1 292 -17 1825 131 7 23 chr15 39623487 39623655 -61756866 + AluSx SINE Alu 138 300 -12 450 187 48 72 chr15 39623655 39623731 -61756790 + L1MB7 LINE L1 6108 6184 0 2073 105 7 3 chr15 39623868 39624174 -61756347 - AluSp SINE Alu -6 307 1 264 279 124 70 chr15 39624297 39624334 -61756187 + L2 LINE L2 1759 1793 -1521 1688 154 7 27 chr15 39624334 39624633 -61755888 + AluJo SINE Alu 5 297 -15 264 279 124 70 chr15 39624633 39624925 -61755596 + L2 LINE L2 1793 2106 -1208 1948 155 70 6 chr15 39625287 39625628 -61754893 - MLT1A1 LTR MaLR -2 363 1 2206 76 7 13 chr15 39625665 39625967 -61754554 + AluY SINE Alu 1 300 -11 2337 74 3 0 chr15 39626937 39627236 -61753285 + AluSp SINE Alu 2 301 -12 1923 134 0 0 chr15 39627976 39628259 -61752262 - AluSx SINE Alu -29 283 1 279 405 82 9 chr15 39628571 39628803 -61751718 - L2 LINE L2 -342 2972 2724 790 107 90 0 chr15 39628804 39628926 -61751595 - MER85 DNA T2_type -6 133 1 2046 126 3 0 chr15 39629172 39629473 -61751048 - AluSq SINE Alu -11 302 1 323 302 40 40 chr15 39629498 39629624 -61750897 - MIR3 SINE MIR -48 160 35 1599 170 3 18 chr15 39629814 39630097 -61750424 + AluJo SINE Alu 15 293 -19 25 0 0 0 chr15 39630838 39630863 -61749658 + AT_rich Low_complexity Low_complexity 1 25 0 2287 99 0 6 chr15 39631772 39632086 -61748435 + AluSp SINE Alu 1 312 -1 2079 110 20 0 chr15 39632204 39632503 -61748018 + AluSg SINE Alu 5 309 -1 838 114 14 57 chr15 39632529 39632669 -61747852 + AluJo SINE Alu 1 134 -178 2083 87 7 7 chr15 39633454 39633742 -61746779 + AluSq SINE Alu 9 296 -17 359 198 0 6 chr15 39633897 39633969 -61746552 - AluSp SINE Alu -107 196 136 441 75 0 0 chr15 39634804 39634857 -61745664 - AluSg/x SINE Alu -142 168 116 2013 80 69 0 chr15 39635364 39635653 -61744868 - AluSp SINE Alu -4 309 1 499 209 310 6 chr15 39636294 39636452 -61744069 + MER3 DNA MER1_type 4 209 0 221 378 54 0 chr15 39637152 39637263 -61743258 + MER5B DNA MER1_type 59 175 -3 2002 81 10 52 chr15 39638106 39638416 -61742105 + AluY SINE Alu 1 297 -14 1881 154 0 3 chr15 39638424 39638717 -61741804 + AluSx SINE Alu 1 292 -20 1225 203 128 8 chr15 39639555 39639821 -61740700 + AluJo SINE Alu 1 298 -4 335 131 98 0 chr15 39639821 39639882 -61740639 + FLAM_A SINE Alu 57 123 -10 2400 64 0 0 chr15 39642661 39642959 -61737562 - AluY SINE Alu -13 298 1 1023 148 12 0 chr15 39643088 39643250 -61737271 + FRAM SINE Alu 1 161 -15 306 0 0 0 chr15 39643278 39643312 -61737209 + (A)n Simple_repeat Simple_repeat 1 34 0 1926 127 7 7 chr15 39643314 39643605 -61736916 + AluSx SINE Alu 1 291 -21 1235 244 124 20 chr15 39643608 39644066 -61736455 - L2 LINE L2 -1536 1778 1273 1558 197 65 34 chr15 39644109 39644184 -61736337 + Charlie4a DNA MER1_type 1 72 -1889 1618 169 3 3 chr15 39644184 39644489 -61736032 - AluJo SINE Alu 0 305 1 1558 197 65 34 chr15 39644489 39644828 -61735693 + Charlie4a DNA MER1_type 72 429 -79 2237 69 0 16 chr15 39644831 39645137 -61735384 - AluY SINE Alu -9 302 2 1112 143 24 38 chr15 39645138 39645347 -61735174 - L1MB2 LINE L1 -42 6129 5924 3706 164 30 8 chr15 39645347 39645969 -61734552 - MER44D DNA MER2_type 0 605 98 1458 146 13 0 chr15 39645969 39646202 -61734319 + AluSq SINE Alu 1 236 -77 230 0 0 32 chr15 39646221 39646252 -61734269 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1785 138 39 0 chr15 39646498 39646780 -61733741 - AluSx SINE Alu -19 293 1 2134 109 3 0 chr15 39646784 39647087 -61733434 - AluSx SINE Alu -8 304 1 1838 241 60 47 chr15 39647101 39647740 -61732781 - HAL1 LINE L1 -245 2262 1616 1239 85 0 6 chr15 39647742 39647907 -61732614 - AluSc SINE Alu -11 298 135 2104 125 0 0 chr15 39647907 39648204 -61732317 - AluSc SINE Alu -12 297 1 2043 106 7 14 chr15 39648207 39648500 -61732021 - AluSx SINE Alu -21 291 1 1457 181 20 43 chr15 39648506 39648665 -61731856 - AluJo SINE Alu -20 292 142 1808 117 3 76 chr15 39648665 39648981 -61731540 - AluSg SINE Alu -17 293 1 1457 181 20 43 chr15 39648981 39649120 -61731401 - AluJo SINE Alu -170 142 1 783 226 92 0 chr15 39649122 39649339 -61731182 - HAL1 LINE L1 -939 1568 1332 29 0 0 0 chr15 39649342 39649371 -61731150 + AT_rich Low_complexity Low_complexity 1 29 0 2186 57 43 0 chr15 39649373 39649654 -61730867 - AluY SINE Alu -18 293 1 2029 128 0 0 chr15 39649662 39649951 -61730570 - AluSx SINE Alu -23 289 1 2143 119 0 0 chr15 39649955 39650267 -61730254 - AluSx SINE Alu 0 312 1 922 210 0 5 chr15 39650277 39650463 -61730058 - FRAM SINE Alu 0 176 1 2173 122 0 0 chr15 39650592 39650904 -61729617 - AluSx SINE Alu 0 312 1 474 243 70 92 chr15 39650915 39651032 -61729489 - HAL1 LINE L1 -1599 908 795 2336 90 0 0 chr15 39651032 39651333 -61729188 + AluY SINE Alu 1 301 -10 474 243 70 92 chr15 39651333 39651400 -61729121 - HAL1 LINE L1 -1712 795 728 180 271 17 0 chr15 39651417 39651476 -61729045 + L2 LINE L2 2896 2955 -317 356 322 96 46 chr15 39651498 39651892 -61728629 - MLT1K LTR MaLR -18 570 157 2327 50 10 10 chr15 39651895 39652197 -61728324 - AluY SINE Alu -9 302 1 2051 111 3 3 chr15 39652299 39652596 -61727925 - AluSp SINE Alu -16 297 1 1796 153 3 17 chr15 39652600 39652765 -61727756 - AluJo SINE Alu -15 297 136 2056 127 3 3 chr15 39652765 39653073 -61727448 - AluSx SINE Alu -4 308 1 1796 153 3 17 chr15 39653073 39653208 -61727313 - AluJo SINE Alu -176 136 1 887 79 0 0 chr15 39653210 39653324 -61727197 - AluY SINE Alu -197 114 1 629 101 0 0 chr15 39653376 39653465 -61727056 - AluJ/FRAM SINE Alu -8 304 216 269 310 92 0 chr15 39653504 39653591 -61726930 + L2 LINE L2 2615 2709 -605 425 312 51 0 chr15 39653615 39653753 -61726768 + MIR SINE MIR 48 192 -70 2478 47 0 0 chr15 39653766 39654067 -61726454 + AluY SINE Alu 1 301 -10 298 262 107 41 chr15 39654265 39654387 -61726134 + L2 LINE L2 2924 3053 -219 1847 110 20 33 chr15 39654624 39654759 -61725762 + AluSx SINE Alu 1 136 -176 2191 100 0 3 chr15 39654759 39655058 -61725463 + AluSx SINE Alu 3 300 -12 1847 110 20 33 chr15 39655058 39655223 -61725298 + AluSx SINE Alu 136 297 -15 234 160 0 0 chr15 39655265 39655315 -61725206 + GA-rich Low_complexity Low_complexity 2 51 0 1818 144 0 26 chr15 39655380 39655685 -61724836 + AluSq SINE Alu 1 297 -16 1947 115 4 0 chr15 39655685 39655964 -61724557 + AluSg SINE Alu 1 280 -30 803 176 52 0 chr15 39655977 39656130 -61724391 + AluJb SINE Alu 136 296 -16 297 75 0 0 chr15 39656130 39656170 -61724351 + (TA)n Simple_repeat Simple_repeat 2 41 0 1655 134 84 0 chr15 39656260 39656522 -61723999 - AluSg SINE Alu -26 284 1 213 39 0 0 chr15 39656573 39656599 -61723922 + (T)n Simple_repeat Simple_repeat 1 26 0 674 178 34 0 chr15 39657167 39657285 -61723236 + FLAM_C SINE Alu 2 123 -20 208 380 50 30 chr15 39658556 39658656 -61721865 - MIR3 SINE MIR -93 115 14 512 176 108 10 chr15 39658663 39658765 -61721756 + MER6B DNA MER2_type 4 115 -161 1255 130 8 20 chr15 39658765 39659004 -61721517 - AluJb SINE Alu -9 303 1 565 224 0 9 chr15 39659004 39659111 -61721410 + MER6B DNA MER2_type 102 207 -3 2168 109 3 13 chr15 39659688 39660000 -61720521 - AluSq SINE Alu 0 313 5 221 217 22 0 chr15 39660016 39660062 -61720459 + L2 LINE L2 3215 3261 -11 198 315 146 0 chr15 39662281 39662370 -61718151 - MIR SINE MIR -67 141 40 227 327 168 9 chr15 39662416 39662523 -61717998 - MIR SINE MIR -43 219 96 2213 104 7 0 chr15 39663126 39663424 -61717097 - AluSx SINE Alu -12 300 1 1656 104 61 32 chr15 39663578 39663858 -61716663 - AluSx SINE Alu -19 293 6 1803 121 32 0 chr15 39663877 39664159 -61716362 - AluSx SINE Alu -15 297 7 1905 140 0 23 chr15 39665938 39666246 -61714275 - AluJb SINE Alu -11 301 1 415 259 86 11 chr15 39666846 39667000 -61713521 + MIR3 SINE MIR 41 204 -4 600 313 40 0 chr15 39672937 39673113 -61707408 + MIR SINE MIR 2 184 -78 1677 190 10 52 chr15 39673117 39673523 -61706998 + L1MB7 LINE L1 5514 5902 -282 528 65 9 157 chr15 39673537 39673593 -61706928 + L1MB7 LINE L1 6086 6120 -64 2361 119 0 0 chr15 39673593 39673904 -61706617 + AluSx SINE Alu 2 312 0 528 65 9 157 chr15 39673904 39673955 -61706566 + L1MB7 LINE L1 6120 6177 -7 421 255 105 13 chr15 39675537 39675690 -61704831 + MIR SINE MIR 10 176 -86 880 159 0 0 chr15 39675722 39675854 -61704667 - FLAM_C SINE Alu -1 132 1 270 276 133 19 chr15 39677039 39677144 -61703377 + MIR SINE MIR 44 160 -102 210 71 0 0 chr15 39677748 39677776 -61702745 + (GGA)n Simple_repeat Simple_repeat 2 29 0 2503 94 3 0 chr15 39677977 39678286 -61702235 + AluSq SINE Alu 2 311 -2 2052 132 67 14 chr15 39678509 39678865 -61701656 + THE1C LTR MaLR 1 375 0 183 229 0 42 chr15 39678977 39679025 -61701496 + MIR SINE MIR 20 65 -143 290 246 200 0 chr15 39679145 39679255 -61701266 + MIR SINE MIR 119 250 -12 458 211 155 28 chr15 39680225 39680367 -61700154 + MIR SINE MIR 47 206 -56 2327 104 0 3 chr15 39681390 39681687 -61698834 - AluSg SINE Alu -13 297 2 2087 145 27 69 chr15 39681696 39682103 -61698418 + MLT1B LTR MaLR 1 390 0 869 132 7 49 chr15 39683337 39683481 -61697040 + FRAM SINE Alu 29 166 -10 242 283 121 0 chr15 39683529 39683628 -61696893 - Charlie8 DNA MER1_type -2303 114 4 273 257 55 73 chr15 39684176 39684285 -61696236 - L2 LINE L2 -27 3245 3139 2006 121 10 41 chr15 39685137 39685451 -61695070 - AluSx SINE Alu -8 304 1 2408 96 0 0 chr15 39685908 39686209 -61694312 - AluSx SINE Alu -11 301 1 187 237 0 0 chr15 39687256 39687294 -61693227 - L2 LINE L2 -9 3304 3267 2611 59 0 0 chr15 39687367 39687673 -61692848 - AluY SINE Alu -5 306 1 882 172 53 0 chr15 39688149 39688300 -61692221 - AluJo/FRAM SINE Alu -7 295 137 1221 96 102 0 chr15 39688300 39688466 -61692055 - AluSc SINE Alu -14 295 113 2090 103 0 14 chr15 39688566 39688858 -61691663 - AluY SINE Alu -23 288 1 1405 55 0 0 chr15 39688872 39689036 -61691485 - AluY SINE Alu -20 291 128 2124 64 35 18 chr15 39689042 39689325 -61691196 - AluSg SINE Alu -22 288 1 1715 127 16 0 chr15 39690374 39690627 -61689894 + AluSx SINE Alu 42 298 -14 749 259 156 36 chr15 39690646 39691137 -61689384 + MLT1H LTR MaLR 5 589 -6 2296 96 7 7 chr15 39691931 39692232 -61688289 - AluSg SINE Alu -9 301 1 2269 95 14 0 chr15 39692394 39692688 -61687833 + AluSp SINE Alu 1 298 -15 2091 132 7 0 chr15 39693607 39693896 -61686625 - AluJb SINE Alu -17 295 5 2237 115 3 7 chr15 39694060 39694356 -61686165 - AluSx SINE Alu -17 295 1 1527 166 87 85 chr15 39694372 39694656 -61685865 + MER119 DNA MER1_type 130 417 -166 2465 84 3 6 chr15 39694656 39694967 -61685554 - AluSg SINE Alu 0 310 1 1527 166 87 85 chr15 39694967 39695128 -61685393 + MER119 DNA MER1_type 417 576 -7 527 232 49 14 chr15 39695417 39695559 -61684962 + MIR SINE MIR 59 205 -57 2499 79 0 0 chr15 39696438 39696741 -61683780 - AluY SINE Alu -8 303 1 453 282 103 0 chr15 39696748 39696922 -61683599 + L1M4 LINE L1 3587 3778 -2368 216 67 0 0 chr15 39696927 39696957 -61683564 + (A)n Simple_repeat Simple_repeat 1 30 0 1528 199 24 20 chr15 39697033 39697325 -61683196 + AluJo SINE Alu 1 293 -19 1976 144 0 27 chr15 39697332 39697654 -61682867 + AluSx SINE Alu 1 312 0 839 155 0 40 chr15 39697716 39697864 -61682657 - FLAM_C SINE Alu -1 142 1 2209 109 0 10 chr15 39697942 39698254 -61682267 - AluSg SINE Alu -1 309 1 2169 140 0 0 chr15 39698259 39698567 -61681954 - AluSx SINE Alu -4 308 1 584 226 112 60 chr15 39698605 39698919 -61681602 - L1ME3A LINE L1 -208 5962 5633 420 272 93 19 chr15 39699357 39699614 -61680907 - L1MC4a LINE L1 -1902 5906 5631 21 36 0 0 chr15 39699824 39699852 -61680669 + AT_rich Low_complexity Low_complexity 1 28 0 2267 107 0 3 chr15 39699940 39700240 -61680281 - AluSx SINE Alu -13 299 1 215 286 79 64 chr15 39700252 39700392 -61680129 + MIR SINE MIR 18 159 -103 1421 151 0 10 chr15 39700778 39700984 -61679537 + AluJo SINE Alu 1 204 -108 32 0 0 0 chr15 39700987 39701019 -61679502 + AT_rich Low_complexity Low_complexity 1 32 0 1333 131 4 72 chr15 39701098 39701334 -61679187 - AluSg/x SINE Alu -8 304 85 819 244 48 19 chr15 39705162 39705371 -61675150 + MIR SINE MIR 34 248 -14 2289 108 0 3 chr15 39706722 39707017 -61673504 - AluSg SINE Alu -16 294 1 2355 88 0 7 chr15 39707380 39707675 -61672846 - AluSc SINE Alu -16 293 1 245 231 200 10 chr15 39708088 39708187 -61672334 - MIR SINE MIR -91 117 38 2092 121 10 26 chr15 39711611 39711918 -61668603 + AluSg SINE Alu 1 302 -8 2235 101 7 26 chr15 39711920 39712227 -61668294 + AluSg SINE Alu 3 303 -7 826 168 0 0 chr15 39712233 39712352 -61668169 + FLAM_C SINE Alu 1 119 -24 1541 171 20 30 chr15 39712432 39712730 -61667791 + AluJo SINE Alu 1 295 -17 2280 86 20 13 chr15 39712834 39713135 -61667386 + AluSq SINE Alu 1 303 -10 1472 75 16 5 chr15 39713198 39713384 -61667137 + AluY SINE Alu 1 188 -123 187 97 161 0 chr15 39714588 39714619 -61665902 - L2 LINE L2 -858 2456 2421 2231 114 0 0 chr15 39714940 39715238 -61665283 - AluY SINE Alu -13 298 1 911 178 22 43 chr15 39715266 39715451 -61665070 - AluJb SINE Alu -2 310 130 2145 110 4 0 chr15 39715919 39716229 -61664292 + AluSg SINE Alu 1 311 0 2035 120 0 0 chr15 39716395 39716662 -61663859 + AluSx SINE Alu 1 267 -45 2496 58 7 0 chr15 39716682 39716974 -61663547 - AluY SINE Alu -17 294 1 1597 164 35 0 chr15 39717193 39717449 -61663072 + AluJo SINE Alu 1 265 -47 1621 173 43 0 chr15 39717542 39717820 -61662701 - AluJb SINE Alu -22 290 1 1470 160 26 77 chr15 39718522 39718835 -61661686 + AluJo SINE Alu 1 297 -15 2509 72 0 3 chr15 39719686 39719993 -61660528 - AluY SINE Alu -5 306 1 2206 109 3 0 chr15 39720087 39720380 -61660141 - AluSg SINE Alu -16 294 1 2309 110 0 3 chr15 39720458 39720768 -61659753 + AluSc SINE Alu 1 309 0 2136 139 3 3 chr15 39720820 39721130 -61659391 - AluSx SINE Alu -2 310 1 2084 132 7 0 chr15 39721231 39721527 -61658994 + AluSx SINE Alu 1 298 -14 827 252 159 39 chr15 39721546 39722037 -61658484 + MLT1H LTR MaLR 5 589 -6 2271 100 3 7 chr15 39722831 39723131 -61657390 - AluSg1 SINE Alu -10 299 1 2252 95 14 0 chr15 39723294 39723588 -61656933 + AluSp SINE Alu 1 298 -15 2067 132 7 0 chr15 39724507 39724796 -61655725 - AluJb SINE Alu -17 295 5 2219 115 3 7 chr15 39724960 39725256 -61655265 - AluSx SINE Alu -17 295 1 1655 163 87 87 chr15 39725272 39725557 -61654964 + MER119 DNA MER1_type 130 417 -166 2442 84 3 6 chr15 39725557 39725868 -61654653 - AluSg SINE Alu 0 310 1 1655 163 87 87 chr15 39725868 39726029 -61654492 + MER119 DNA MER1_type 416 576 -7 470 232 49 14 chr15 39726318 39726460 -61654061 + MIR SINE MIR 59 205 -57 2486 79 0 0 chr15 39727339 39727642 -61652879 - AluY SINE Alu -8 303 1 231 282 103 0 chr15 39727649 39727823 -61652698 + L1ME LINE L1 3587 3778 -2368 216 67 0 0 chr15 39727828 39727858 -61652663 + (A)n Simple_repeat Simple_repeat 1 30 0 1491 199 24 20 chr15 39727934 39728226 -61652295 + AluJo SINE Alu 1 293 -19 1953 144 0 27 chr15 39728233 39728555 -61651966 + AluSx SINE Alu 1 312 0 824 132 0 69 chr15 39728621 39728765 -61651756 - AluJo SINE Alu -178 134 1 2001 123 0 7 chr15 39728846 39729156 -61651365 - AluSx SINE Alu 0 308 1 2250 99 3 3 chr15 39729189 39729492 -61651029 + AluY SINE Alu 1 303 -8 1301 101 6 0 chr15 39729492 39729670 -61650851 + AluY SINE Alu 133 311 0 2018 140 0 10 chr15 39729925 39730232 -61650289 - AluJb SINE Alu -8 304 1 1081 128 39 54 chr15 39730244 39730447 -61650074 - AluJo SINE Alu -27 285 86 456 259 139 27 chr15 39730465 39730766 -61649755 + L1ME LINE L1 4377 4711 -1435 265 213 113 0 chr15 39730933 39731013 -61649508 + L1P LINE L1 4919 5007 -1139 229 277 0 20 chr15 39731342 39731443 -61649078 + L1ME LINE L1 5304 5402 -957 563 89 0 0 chr15 39731464 39731543 -61648978 + AluSp/q SINE Alu 224 302 -11 465 236 36 50 chr15 39731543 39731683 -61648838 + L1ME LINE L1 5393 5530 -632 2340 106 0 0 chr15 39731694 39731997 -61648524 - AluSx SINE Alu -9 303 1 1383 167 42 77 chr15 39732008 39732149 -61648372 - AluJo SINE Alu -31 281 154 2305 79 7 7 chr15 39732149 39732460 -61648061 - AluSq SINE Alu 0 313 1 1383 167 42 77 chr15 39732460 39732605 -61647916 - AluJo SINE Alu -158 154 5 2044 127 3 3 chr15 39732701 39733000 -61647521 - AluSx SINE Alu -13 299 1 429 141 0 13 chr15 39733170 39733248 -61647273 + FLAM_A SINE Alu 31 107 -35 230 228 53 9 chr15 39733466 39733580 -61646941 + (TA)n Simple_repeat Simple_repeat 1 119 0 1626 135 87 0 chr15 39734646 39734912 -61645609 - AluSx SINE Alu -23 289 1 1066 88 0 7 chr15 39734912 39735048 -61645473 - AluSq/x SINE Alu -178 135 1 21 0 0 0 chr15 39735117 39735138 -61645383 + AT_rich Low_complexity Low_complexity 1 21 0 1746 161 11 0 chr15 39735505 39735779 -61644742 - AluJb SINE Alu -35 277 1 2329 75 14 3 chr15 39735903 39736196 -61644325 - AluSq SINE Alu -17 296 1 2165 111 0 10 chr15 39736871 39737168 -61643353 - AluSc SINE Alu -15 294 1 2289 99 3 0 chr15 39738221 39738523 -61641998 - AluSg SINE Alu -7 303 1 2520 72 3 0 chr15 39738823 39739129 -61641392 - AluY SINE Alu -4 307 1 479 172 95 0 chr15 39739196 39739312 -61641209 - MER5A DNA MER1_type -2 187 61 237 132 0 0 chr15 39739312 39739350 -61641171 + (T)n Simple_repeat Simple_repeat 1 38 0 593 184 0 0 chr15 39739391 39739489 -61641032 - AluJ/FLAM SINE Alu -213 99 2 288 206 73 0 chr15 39739491 39739559 -61640962 - MER5A DNA MER1_type -116 73 1 2415 83 3 0 chr15 39739604 39739905 -61640616 + AluSp SINE Alu 1 302 -11 1673 136 0 19 chr15 39740000 39740088 -61640433 + AluSx SINE Alu 49 137 -175 1941 139 0 35 chr15 39740088 39740405 -61640116 + AluSx SINE Alu 1 306 -6 1673 136 0 19 chr15 39740405 39740573 -61639948 + AluSx SINE Alu 137 300 -12 1032 148 5 42 chr15 39740573 39740762 -61639759 - AluJo SINE Alu -130 182 1 2104 122 0 3 chr15 39740769 39741057 -61639464 - AluSx SINE Alu -19 293 7 447 182 202 0 chr15 39741057 39741156 -61639365 - HAL1 LINE L1 -752 1755 1637 584 98 12 0 chr15 39741157 39741239 -61639282 - AluSg SINE Alu -11 299 217 1000 122 0 0 chr15 39741239 39741370 -61639151 - AluSg SINE Alu -179 131 1 792 217 71 0 chr15 39741372 39741570 -61638951 - HAL1 LINE L1 -866 1641 1430 761 185 73 20 chr15 39741570 39741721 -61638800 + FRAM SINE Alu 1 157 -19 2072 135 30 0 chr15 39741756 39742059 -61638462 - AluSx SINE Alu 0 312 1 1888 129 20 20 chr15 39742066 39742369 -61638152 - AluSx SINE Alu -3 309 7 362 151 43 108 chr15 39742378 39742471 -61638050 - HAL1 LINE L1 -1122 1385 1299 668 211 0 0 chr15 39742498 39742612 -61637909 - FRAM SINE Alu -23 153 40 2437 80 0 3 chr15 39742629 39742941 -61637580 - AluY SINE Alu 0 311 1 2242 108 0 16 chr15 39742943 39743257 -61637264 - AluSc SINE Alu 0 309 1 241 219 172 42 chr15 39743263 39743501 -61637020 - HAL1 LINE L1 -1210 1297 1029 2284 102 0 35 chr15 39743621 39743934 -61636587 - AluSq SINE Alu -11 302 1 929 148 0 0 chr15 39743934 39744069 -61636452 - AluSq/x SINE Alu -178 135 1 1388 179 13 84 chr15 39744506 39744814 -61635707 + AluJo SINE Alu 1 286 -26 2343 104 7 0 chr15 39744974 39745281 -61635240 - AluSq SINE Alu -4 309 1 499 97 0 14 chr15 39745283 39745355 -61635166 - AluJ/FRAM SINE Alu -16 296 226 351 278 57 66 chr15 39745923 39746074 -61634447 - MIR SINE MIR -6 256 106 2100 126 6 31 chr15 39746074 39746391 -61634130 + AluSp SINE Alu 1 309 -4 351 278 57 66 chr15 39746391 39746451 -61634070 - MIR SINE MIR -156 106 47 184 290 14 58 chr15 39746886 39746955 -61633566 + MIR SINE MIR 49 114 -148 26 50 0 0 chr15 39746989 39747029 -61633492 + AT_rich Low_complexity Low_complexity 1 40 0 2541 62 7 0 chr15 39747190 39747497 -61633024 - AluY SINE Alu -2 309 1 2145 135 0 0 chr15 39747507 39747810 -61632711 - AluSx SINE Alu -9 303 1 680 223 112 60 chr15 39747848 39748162 -61632359 - L1ME3A LINE L1 -208 5962 5633 490 269 93 19 chr15 39748600 39748857 -61631664 - L1MC4a LINE L1 -1902 5906 5631 21 36 0 0 chr15 39749067 39749095 -61631426 + AT_rich Low_complexity Low_complexity 1 28 0 2249 107 0 3 chr15 39749183 39749483 -61631038 - AluSx SINE Alu -13 299 1 1405 151 0 10 chr15 39750021 39750227 -61630294 + AluJo SINE Alu 1 204 -108 28 0 0 0 chr15 39750230 39750258 -61630263 + AT_rich Low_complexity Low_complexity 1 28 0 514 214 112 31 chr15 39750258 39750341 -61630180 + MER112 DNA MER1_type 49 124 -136 1954 129 3 68 chr15 39750341 39750520 -61630001 - AluSx SINE Alu -8 304 154 2166 104 30 3 chr15 39750520 39750818 -61629703 - AluY SINE Alu -5 306 1 1954 129 3 68 chr15 39750818 39750963 -61629558 - AluSx SINE Alu -158 154 1 514 214 112 31 chr15 39750963 39751075 -61629446 + MER112 DNA MER1_type 124 260 0 396 233 62 88 chr15 39751098 39751180 -61629341 + MIR SINE MIR 41 124 -138 2125 115 0 0 chr15 39751180 39751468 -61629053 - AluSg SINE Alu 0 310 23 396 233 62 88 chr15 39751468 39751578 -61628943 + MIR SINE MIR 124 228 -34 349 303 35 35 chr15 39751577 39751719 -61628802 - L2 LINE L2 0 3313 3172 * 227 200 160 0 chr15 39752219 39752269 -61628252 + L2 LINE L2 3256 3313 0 1863 179 10 0 chr15 39752338 39752645 -61627876 - AluJb SINE Alu -2 310 1 23 33 0 0 chr15 39752689 39752719 -61627802 + AT_rich Low_complexity Low_complexity 1 30 0 491 284 70 82 chr15 39752834 39753165 -61627356 - L1MC4a LINE L1 -457 5664 5338 2178 93 21 7 chr15 39753660 39753951 -61626570 + AluSx SINE Alu 1 295 -17 1614 64 0 81 chr15 39753952 39754187 -61626334 + AluY SINE Alu 1 216 -95 2245 104 3 3 chr15 39754269 39754576 -61625945 + AluSp SINE Alu 1 307 -6 466 187 48 72 chr15 39754713 39754789 -61625732 - L1MB7 LINE L1 0 6184 6108 1945 131 7 23 chr15 39754789 39754957 -61625564 - AluSx SINE Alu -12 300 138 2129 106 3 7 chr15 39754957 39755250 -61625271 - AluSg1 SINE Alu -17 292 1 1945 131 7 23 chr15 39755250 39755386 -61625135 - AluSx SINE Alu -174 138 1 466 187 48 72 chr15 39755386 39755475 -61625046 - L1MB7 LINE L1 -76 6108 6023 1442 204 3 39 chr15 39755476 39755785 -61624736 + AluJo SINE Alu 1 298 -14 2047 114 11 4 chr15 39756188 39756461 -61624060 + AluSx SINE Alu 1 275 -37 1644 93 0 0 chr15 39756516 39756721 -61623800 + AluSg/x SINE Alu 95 299 -13 366 219 27 75 chr15 39757011 39757075 -61623446 + HAL1b LINE L1 1203 1269 -79 2379 73 7 0 chr15 39757075 39757363 -61623158 - AluSg1 SINE Alu -19 290 1 366 219 27 75 chr15 39757363 39757444 -61623077 + HAL1b LINE L1 1269 1341 -7 23 0 0 0 chr15 39757564 39757587 -61622934 + AT_rich Low_complexity Low_complexity 1 23 0 2442 57 0 0 chr15 39757797 39758124 -61622397 - AluY SINE Alu 0 327 1 923 230 22 9 chr15 39758865 39759091 -61621430 + MIR SINE MIR 13 241 -21 904 143 8 0 chr15 39759181 39759314 -61621207 + AluJo SINE Alu 1 134 -178 1599 184 28 18 chr15 39759317 39759600 -61620921 + AluJb SINE Alu 1 286 -26 1260 123 0 0 chr15 39759710 39759881 -61620640 - AluSq SINE Alu -10 303 133 291 54 0 0 chr15 39759881 39759918 -61620603 + (TTG)n Simple_repeat Simple_repeat 3 39 0 2216 88 4 0 chr15 39759919 39760191 -61620330 - AluSg SINE Alu -30 280 8 1380 93 25 5 chr15 39760199 39760403 -61620118 - L1MB8 LINE L1 -229 5949 5742 2288 121 0 0 chr15 39760405 39760718 -61619803 - AluSq SINE Alu 0 313 1 1912 156 0 3 chr15 39760725 39761020 -61619501 - AluJb SINE Alu -18 294 1 2109 178 55 29 chr15 39761054 39761155 -61619366 + L1M4 LINE L1 5265 5362 -816 2445 78 7 0 chr15 39761155 39761463 -61619058 + AluSx SINE Alu 3 312 0 2109 178 55 29 chr15 39761463 39761816 -61618705 + L1M4 LINE L1 5362 5731 -447 1732 161 18 3 chr15 39761817 39762102 -61618419 + AluJb SINE Alu 1 289 -23 1127 271 31 3 chr15 39762103 39762196 -61618325 - L1ME1 LINE L1 -21 6145 6056 2251 112 0 7 chr15 39762196 39762500 -61618021 + AluSx SINE Alu 1 302 -10 1127 271 31 3 chr15 39762500 39762727 -61617794 - L1ME1 LINE L1 -110 6056 5816 584 287 100 17 chr15 39762733 39762963 -61617558 - MIR SINE MIR -12 250 2 1254 111 0 0 chr15 39763230 39763392 -61617129 + AluSg/x SINE Alu 133 294 -16 612 261 194 11 chr15 39763523 39763896 -61616625 - L1MC4a LINE L1 -472 5649 5524 213 139 0 0 chr15 39764104 39764147 -61616374 + (T)n Simple_repeat Simple_repeat 1 43 0 1242 101 16 16 chr15 39764152 39764341 -61616180 + L1MA4A LINE L1 6051 6239 -64 2222 121 3 3 chr15 39765067 39765373 -61615148 + AluSx SINE Alu 1 306 -6 189 0 0 0 chr15 39765491 39765512 -61615009 + (T)n Simple_repeat Simple_repeat 1 21 0 1803 116 0 0 chr15 39765527 39765760 -61614761 - AluSg SINE Alu -77 233 1 2114 92 33 0 chr15 39765774 39766075 -61614446 - AluSp SINE Alu 0 310 1 1771 167 22 0 chr15 39767498 39767774 -61612747 + AluJb SINE Alu 1 282 -30 1527 158 13 77 chr15 39768026 39768336 -61612185 - AluJb SINE Alu -22 290 1 1641 160 77 7 chr15 39768440 39768727 -61611794 - AluJo SINE Alu -5 307 1 2350 102 0 3 chr15 39769361 39769664 -61610857 - AluSg SINE Alu -8 302 1 204 40 0 0 chr15 39769801 39769826 -61610695 + (T)n Simple_repeat Simple_repeat 1 25 0 2033 138 3 49 chr15 39769837 39770026 -61610495 - AluSx SINE Alu -2 310 141 2483 87 0 0 chr15 39770026 39770337 -61610184 - AluY SINE Alu 0 311 1 2033 138 3 49 chr15 39770337 39770472 -61610049 - AluSx SINE Alu -171 141 1 2088 133 3 10 chr15 39770474 39770767 -61609754 - AluSx SINE Alu -21 291 1 4325 143 64 49 chr15 39770767 39771107 -61609414 - L1MA8 LINE L1 -1 6290 5956 1463 203 7 4 chr15 39771107 39771388 -61609133 - AluJo SINE Alu -30 282 1 4325 143 64 49 chr15 39771388 39771425 -61609096 - L1MA8 LINE L1 -335 5956 5921 825 91 0 0 chr15 39771425 39771535 -61608986 - HY1 scRNA scRNA -2 110 1 4325 143 64 49 chr15 39771535 39772110 -61608411 - L1MA8 LINE L1 -370 5921 5323 2128 137 3 6 chr15 39772110 39772423 -61608098 - AluSq SINE Alu -1 312 1 1133 109 15 55 chr15 39772436 39772618 -61607903 - AluSg/x SINE Alu 0 310 135 2176 117 7 10 chr15 39772618 39772792 -61607729 - AluSx SINE Alu -5 307 133 2200 127 7 0 chr15 39772792 39773100 -61607421 - AluSx SINE Alu -2 310 1 2176 117 7 10 chr15 39773100 39773233 -61607288 - AluSx SINE Alu -179 133 1 1133 109 15 55 chr15 39773233 39773251 -61607270 - AluSg/x SINE Alu -175 135 118 2523 75 0 3 chr15 39774152 39774457 -61606064 - AluSq SINE Alu -9 304 1 230 257 199 35 chr15 39774887 39775058 -61605463 - MER112 DNA MER1_type -2 258 60 29 0 0 0 chr15 39775083 39775112 -61605409 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr15 39775819 39775839 -61604682 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 189 0 0 0 chr15 39776322 39776343 -61604178 + (T)n Simple_repeat Simple_repeat 1 21 0 191 367 42 8 chr15 39777329 39777449 -61603072 - L2 LINE L2 -586 2728 2605 371 274 137 8 chr15 39777629 39777746 -61602775 + MIR3 SINE MIR 11 142 -66 2376 95 0 3 chr15 39777787 39778091 -61602430 - AluSg SINE Alu -7 303 1 26 30 0 0 chr15 39778295 39778328 -61602193 + AT_rich Low_complexity Low_complexity 1 33 0 862 244 78 0 chr15 39779506 39779711 -61600810 + MER58A DNA MER1_type 4 224 0 21 0 0 0 chr15 39781067 39781088 -61599433 + AT_rich Low_complexity Low_complexity 1 21 0 2163 127 0 13 chr15 39782147 39782447 -61598074 + AluSx SINE Alu 1 296 -16 2080 115 4 0 chr15 39782447 39782726 -61597795 + AluSg SINE Alu 1 280 -30 873 192 48 0 chr15 39782739 39782893 -61597628 + AluJb SINE Alu 136 300 -12 300 53 0 0 chr15 39782893 39782931 -61597590 + (TA)n Simple_repeat Simple_repeat 2 39 0 873 192 48 0 chr15 39782931 39782943 -61597578 + AluJb SINE Alu 300 310 -2 1805 130 84 0 chr15 39783021 39783283 -61597238 - AluSg SINE Alu -26 284 1 222 37 0 0 chr15 39783334 39783361 -61597160 + (T)n Simple_repeat Simple_repeat 1 27 0 693 178 34 0 chr15 39783929 39784047 -61596474 + FLAM_C SINE Alu 2 123 -20 209 380 50 30 chr15 39785318 39785418 -61595103 - MIR3 SINE MIR -93 115 14 480 176 108 10 chr15 39785425 39785527 -61594994 + MER6B DNA MER2_type 4 115 -161 1356 130 8 20 chr15 39785527 39785766 -61594755 - AluJb SINE Alu -9 303 1 539 224 0 9 chr15 39785766 39785873 -61594648 + MER6B DNA MER2_type 102 207 -3 2322 109 3 13 chr15 39786450 39786762 -61593759 - AluSq SINE Alu 0 313 5 219 217 22 0 chr15 39786778 39786824 -61593697 + L2 LINE L2 3215 3261 -11 201 315 146 0 chr15 39789043 39789132 -61591389 - MIR SINE MIR -67 141 40 227 327 168 9 chr15 39789178 39789285 -61591236 - MIR SINE MIR -43 219 96 2362 104 7 0 chr15 39789888 39790186 -61590335 - AluSx SINE Alu -12 300 1 1788 104 61 32 chr15 39790340 39790620 -61589901 - AluSx SINE Alu -19 293 6 1943 115 30 20 chr15 39790626 39790921 -61589600 - AluSx SINE Alu -8 304 7 2056 140 0 23 chr15 39792701 39793009 -61587512 - AluJb SINE Alu -11 301 1 415 259 86 11 chr15 39793609 39793763 -61586758 + MIR3 SINE MIR 41 204 -4 600 313 40 0 chr15 39799700 39799876 -61580645 + MIR SINE MIR 2 184 -78 1677 190 10 52 chr15 39799880 39800286 -61580235 + L1MB7 LINE L1 5514 5902 -282 528 65 9 157 chr15 39800300 39800356 -61580165 + L1MB7 LINE L1 6086 6120 -64 2361 119 0 0 chr15 39800356 39800667 -61579854 + AluSx SINE Alu 2 312 0 528 65 9 157 chr15 39800667 39800718 -61579803 + L1MB7 LINE L1 6120 6177 -7 421 255 105 13 chr15 39802300 39802453 -61578068 + MIR SINE MIR 10 176 -86 880 159 0 0 chr15 39802485 39802617 -61577904 - FLAM_C SINE Alu -1 132 1 270 276 133 19 chr15 39803802 39803907 -61576614 + MIR SINE MIR 44 160 -102 210 71 0 0 chr15 39804511 39804539 -61575982 + (GGA)n Simple_repeat Simple_repeat 2 29 0 2503 94 3 0 chr15 39804740 39805049 -61575472 + AluSq SINE Alu 2 311 -2 2052 132 67 14 chr15 39805272 39805628 -61574893 + THE1C LTR MaLR 1 375 0 183 229 0 42 chr15 39805740 39805788 -61574733 + MIR SINE MIR 20 65 -143 290 246 200 0 chr15 39805908 39806018 -61574503 + MIR SINE MIR 119 250 -12 458 211 155 28 chr15 39806988 39807130 -61573391 + MIR SINE MIR 47 206 -56 2327 104 0 3 chr15 39808153 39808450 -61572071 - AluSg SINE Alu -13 297 2 2087 145 27 69 chr15 39808459 39808866 -61571655 + MLT1B LTR MaLR 1 390 0 869 132 7 49 chr15 39810100 39810244 -61570277 + FRAM SINE Alu 29 166 -10 242 283 121 0 chr15 39810292 39810391 -61570130 - Charlie8 DNA MER1_type -2303 114 4 273 257 55 73 chr15 39810939 39811048 -61569473 - L2 LINE L2 -27 3245 3139 2006 121 10 41 chr15 39811900 39812214 -61568307 - AluSx SINE Alu -8 304 1 2408 96 0 0 chr15 39812671 39812972 -61567549 - AluSx SINE Alu -11 301 1 187 237 0 0 chr15 39814019 39814057 -61566464 - L2 LINE L2 -9 3304 3267 2637 52 0 0 chr15 39814130 39814436 -61566085 - AluY SINE Alu -5 306 1 1853 140 32 3 chr15 39814914 39815063 -61565458 - AluJb SINE Alu -19 293 150 2119 93 61 0 chr15 39815063 39815341 -61565180 - AluSc SINE Alu -14 295 1 1853 140 32 3 chr15 39815341 39815476 -61565045 - AluJb SINE Alu -162 150 1 1608 153 0 4 chr15 39815649 39815885 -61564636 + AluJb SINE Alu 70 304 -8 2222 123 0 16 chr15 39816648 39816965 -61563556 + AluSx SINE Alu 1 312 0 2162 136 3 0 chr15 39817006 39817315 -61563206 - AluSx SINE Alu -2 310 1 548 91 23 11 chr15 39818050 39818138 -61562383 + AluJ/FRAM SINE Alu 224 312 0 809 265 56 8 chr15 39818260 39818509 -61562012 - MIR SINE MIR 0 262 2 2461 171 68 6 chr15 39818717 39819202 -61561319 + MLT1F1 LTR MaLR 3 517 -50 354 275 170 0 chr15 39819535 39819683 -61560838 + MER5A DNA MER1_type 4 183 -6 2241 90 6 50 chr15 39820275 39820598 -61559923 + AluSq SINE Alu 1 309 -4 288 273 216 0 chr15 39821263 39821351 -61559170 - MIR SINE MIR -65 143 37 222 161 45 152 chr15 39821895 39822007 -61558514 + L2 LINE L2 3173 3272 -41 250 26 51 0 chr15 39822009 39822048 -61558473 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 405 240 58 16 chr15 39822055 39822176 -61558345 - L2 LINE L2 -29 3284 3159 292 210 157 127 chr15 39822181 39822277 -61558244 - MIR SINE MIR 0 262 170 2481 87 3 3 chr15 39822277 39822589 -61557932 - AluSx SINE Alu 0 312 1 292 210 157 127 chr15 39822589 39822713 -61557808 - MIR SINE MIR -92 170 36 1230 135 82 14 chr15 39822719 39822926 -61557595 + MER58A DNA MER1_type 1 221 -3 427 188 42 21 chr15 39824111 39824207 -61556314 - MIR SINE MIR -75 187 90 2354 93 0 3 chr15 39824342 39824642 -61555879 - AluSq SINE Alu -13 300 2 2178 95 25 3 chr15 39824963 39825248 -61555273 - AluSx SINE Alu -21 291 1 2391 78 7 0 chr15 39825707 39826002 -61554519 + AluSq SINE Alu 1 297 -16 361 244 24 12 chr15 39828257 39828339 -61552182 + L2 LINE L2 3156 3238 -34 529 250 94 26 chr15 39829754 39829946 -61550575 + MIR SINE MIR 25 229 -33 2002 146 3 3 chr15 39830232 39830533 -61549988 - AluSx SINE Alu -11 301 1 691 302 57 74 chr15 39830743 39831217 -61549304 - L2 LINE L2 0 3272 2807 284 259 32 63 chr15 39831472 39831630 -61548891 + MIR3 SINE MIR 46 198 -10 573 310 16 0 chr15 39832208 39832395 -61548126 + L2 LINE L2 2504 2693 -621 2333 110 0 0 chr15 39832567 39832868 -61547653 - AluSx SINE Alu -11 301 1 476 202 150 6 chr15 39832985 39833154 -61547367 - L1MC4a LINE L1 -400 5774 5675 771 249 179 27 chr15 39833172 39833660 -61546861 + L2 LINE L2 2752 3309 -4 252 88 0 0 chr15 39833937 39833971 -61546550 + tRNA-Val-GTG tRNA tRNA 2 35 -41 3055 139 12 48 chr15 39834346 39834863 -61545658 + MER41E LTR ERV1 15 512 0 25 0 0 0 chr15 39836551 39836576 -61543945 + AT_rich Low_complexity Low_complexity 1 25 0 286 356 59 0 chr15 39839500 39839635 -61540886 + MIR SINE MIR 47 189 -73 1029 151 6 0 chr15 39840881 39841053 -61539468 - MER5A DNA MER1_type 0 189 17 180 275 14 14 chr15 39841817 39841886 -61538635 + MIR SINE MIR 71 139 -123 240 225 16 77 chr15 39841958 39842140 -61538381 + A-rich Low_complexity Low_complexity 4 174 0 21 0 0 0 chr15 39842385 39842406 -61538115 + AT_rich Low_complexity Low_complexity 1 21 0 744 204 0 40 chr15 39843411 39843587 -61536934 + AluSq SINE Alu 2 170 -143 2100 126 0 16 chr15 39844067 39844377 -61536144 + AluSq SINE Alu 1 305 -8 1903 139 7 20 chr15 39845058 39845360 -61535161 - AluJo SINE Alu -14 298 1 807 304 8 40 chr15 39846156 39846235 -61534286 - LTR16A LTR ERVL 0 450 370 2119 104 34 24 chr15 39846235 39846533 -61533988 + AluSx SINE Alu 1 301 -11 807 304 8 40 chr15 39846533 39846706 -61533815 - LTR16A LTR ERVL -80 370 206 318 95 0 0 chr15 39846855 39846897 -61533624 + AluY SINE Alu 1 42 -258 1807 71 0 5 chr15 39846897 39847121 -61533400 + AluY SINE Alu 79 301 -10 516 279 87 0 chr15 39847129 39847312 -61533209 - MIR SINE MIR -44 218 20 2057 116 0 36 chr15 39847739 39848042 -61532479 - AluSx SINE Alu -20 292 1 1368 136 10 5 chr15 39848887 39849086 -61531435 + AluJb SINE Alu 1 200 -112 688 204 26 26 chr15 39849087 39849239 -61531282 - AluJo SINE Alu -47 265 114 1858 139 0 55 chr15 39850568 39850760 -61529761 - AluJb SINE Alu -20 292 122 2321 102 3 3 chr15 39850760 39851064 -61529457 + AluSp SINE Alu 1 304 -9 1858 139 0 55 chr15 39851064 39851180 -61529341 - AluJb SINE Alu -190 122 1 1827 179 114 14 chr15 39851269 39851689 -61528832 + MLT1C LTR MaLR 6 467 0 2172 143 8 30 chr15 39851862 39852225 -61528296 - MSTC LTR MaLR 0 428 74 1346 140 19 125 chr15 39852225 39852546 -61527975 - AluSq SINE Alu -17 296 10 844 205 12 12 chr15 39852546 39852712 -61527809 - L1ME LINE L1 -5616 454 289 777 137 23 8 chr15 39852755 39852886 -61527635 - AluJb SINE Alu -178 134 2 664 289 40 18 chr15 39852899 39853124 -61527397 - L1ME LINE L1 -5830 240 11 23 0 0 0 chr15 39853150 39853173 -61527348 + AT_rich Low_complexity Low_complexity 1 23 0 1616 157 32 21 chr15 39853586 39853867 -61526654 + AluSg1 SINE Alu 9 292 -17 21 0 0 0 chr15 39854266 39854287 -61526234 + AT_rich Low_complexity Low_complexity 1 21 0 775 71 0 0 chr15 39854513 39854611 -61525910 + AluSg/x SINE Alu 200 297 -15 711 286 91 5 chr15 39856539 39856759 -61523762 - MIR SINE MIR -19 243 5 814 105 18 94 chr15 39859640 39859752 -61520769 - L1MA5 LINE L1 -80 6220 6124 2383 88 0 7 chr15 39859752 39860058 -61520463 + AluY SINE Alu 2 305 -6 814 105 18 94 chr15 39860058 39860116 -61520405 - L1MA5 LINE L1 -176 6124 6063 674 44 11 0 chr15 39860564 39860654 -61519867 + (TG)n Simple_repeat Simple_repeat 2 92 0 202 353 128 0 chr15 39862505 39862607 -61517914 - MIR SINE MIR -60 148 34 25 51 0 0 chr15 39865040 39865079 -61515442 + AT_rich Low_complexity Low_complexity 1 39 0 2100 148 0 6 chr15 39865788 39866099 -61514422 - AluSx SINE Alu -3 309 1 326 238 221 0 chr15 39866502 39866624 -61513897 - MIR SINE MIR -12 250 102 202 299 0 0 chr15 39866918 39866985 -61513536 + A-rich Low_complexity Low_complexity 1 67 0 1601 151 12 81 chr15 39867017 39867349 -61513172 - AluJb SINE Alu -3 309 1 228 273 0 0 chr15 39868211 39868266 -61512255 + MIR3 SINE MIR 151 205 -3 1319 77 0 0 chr15 39868530 39868686 -61511835 - AluSp SINE Alu -24 289 134 2227 101 0 10 chr15 39868686 39868857 -61511664 - AluSx SINE Alu -8 304 136 2257 89 20 0 chr15 39868857 39869150 -61511371 - AluY SINE Alu -12 299 1 2227 101 0 10 chr15 39869150 39869285 -61511236 - AluSx SINE Alu -176 136 1 17466 32 0 0 chr15 39869540 39872670 -61507851 + L1PA4 LINE L1 3025 6155 0 261 0 0 0 chr15 39872683 39872712 -61507809 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 246 154 0 0 chr15 39872985 39873024 -61507497 + Alu SINE Alu 1 39 -261 582 126 0 0 chr15 39873024 39873111 -61507410 + AluJ/FRAM SINE Alu 226 312 0 393 308 31 39 chr15 39873966 39874096 -61506425 - MIR SINE MIR -89 173 45 2441 76 7 3 chr15 39874179 39874483 -61506038 - AluSp SINE Alu -8 305 1 197 343 108 20 chr15 39874591 39874693 -61505828 - L2 LINE L2 -9 3263 3153 1982 133 10 10 chr15 39874695 39875003 -61505518 + AluSx SINE Alu 1 308 -4 224 360 75 25 chr15 39875283 39875561 -61504960 - L2 LINE L2 -416 2898 2607 319 127 55 0 chr15 39875787 39875842 -61504679 - L1MCa LINE L1 -4363 2063 2006 2114 121 0 0 chr15 39875850 39876131 -61504390 - AluSg SINE Alu -27 283 3 378 345 10 12 chr15 39876133 39876330 -61504191 - MIR SINE MIR -53 209 16 2163 50 15 12 chr15 39876358 39876617 -61503904 - L1PA8 LINE L1 -4 6168 5909 387 211 145 40 chr15 39876703 39876855 -61503666 - L1MC5 LINE L1 -48 7913 7746 1633 158 28 11 chr15 39877689 39877974 -61502547 - AluJo SINE Alu -11 301 12 355 336 29 0 chr15 39878045 39878149 -61502372 - L2 LINE L2 -2 3270 3164 1604 118 95 23 chr15 39879088 39879350 -61501171 - AluSx SINE Alu -28 284 4 1456 152 141 0 chr15 39879569 39879663 -61500858 + AluSc SINE Alu 2 81 -228 279 0 0 0 chr15 39879663 39879694 -61500827 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1456 152 141 0 chr15 39879694 39879868 -61500653 + AluSc SINE Alu 81 308 -1 1251 102 68 0 chr15 39880017 39880193 -61500328 + AluSg SINE Alu 2 189 -121 991 102 121 32 chr15 39880307 39880464 -61500057 - AluSg/x SINE Alu -37 273 103 613 148 218 0 chr15 39880498 39880599 -61499922 + AluSq/x SINE Alu 3 125 -188 291 113 0 0 chr15 39880600 39880653 -61499868 + (TA)n Simple_repeat Simple_repeat 1 53 0 186 305 51 0 chr15 39881004 39881063 -61499458 - L3 LINE CR1 -24 1553 1492 709 277 52 0 chr15 39881077 39881232 -61499289 - MER91A DNA MER1_type -22 174 12 1349 290 78 53 chr15 39881250 39881576 -61498945 - L3 LINE CR1 -100 1477 1160 2632 49 0 0 chr15 39881576 39881883 -61498638 - AluY SINE Alu -4 307 1 1349 290 78 53 chr15 39881883 39881930 -61498591 - L3 LINE CR1 -417 1160 1116 2205 114 0 7 chr15 39881930 39882229 -61498292 - AluSx SINE Alu -15 297 1 1349 290 78 53 chr15 39882229 39882564 -61497957 - L3 LINE CR1 -461 1116 751 190 367 23 31 chr15 39882741 39882869 -61497652 - L2 LINE L2 -212 3060 2934 236 358 46 46 chr15 39883126 39883235 -61497286 + L2 LINE L2 3155 3263 -9 377 250 78 0 chr15 39884018 39884146 -61496375 + L1ME LINE L1 5352 5489 -675 3442 194 44 52 chr15 39884152 39885075 -61495446 + L1M4 LINE L1 4456 5371 -775 254 272 25 0 chr15 39885082 39885163 -61495358 - LTR19A LTR ERV1 -3 483 401 1211 123 0 0 chr15 39885226 39885388 -61495133 - AluSp SINE Alu -12 301 140 2182 122 3 10 chr15 39885391 39885694 -61494827 - AluSx SINE Alu -11 301 1 356 306 20 20 chr15 39886279 39886426 -61494095 - HERVR LTR ERV1 -279 7113 6967 778 139 8 8 chr15 39887832 39887954 -61492567 + Tigger1 DNA MER2_type 2296 2417 -1 888 182 117 9 chr15 39887956 39888187 -61492334 + Tigger6 DNA MER2_type 1339 1594 -3 661 313 102 36 chr15 39888289 39888730 -61491791 + L3b LINE CR1 1111 1580 -3 222 37 0 0 chr15 39889011 39889038 -61491483 + (CTG)n Simple_repeat Simple_repeat 3 29 0 1453 294 0 97 chr15 39889949 39890279 -61490242 - AluSx SINE Alu -3 299 2 299 29 0 0 chr15 39890281 39890315 -61490206 - LTR8 LTR ERV1 -111 580 547 761 216 62 11 chr15 39890317 39890493 -61490028 - AluJo SINE Alu -13 299 115 4188 194 48 32 chr15 39890495 39890791 -61489730 - L1 LINE L1 -3129 4436 4146 2297 99 0 7 chr15 39890791 39891095 -61489426 - AluSc SINE Alu -7 302 1 4188 194 48 32 chr15 39891095 39892049 -61488472 - L1 LINE L1 -3419 4146 3140 1701 158 56 3 chr15 39892049 39892333 -61488188 - AluSx SINE Alu -12 300 2 4188 194 48 32 chr15 39892333 39892645 -61487876 - L1 LINE L1 -4425 3140 2835 1989 166 24 18 chr15 39892645 39892983 -61487538 + MER2 DNA MER2_type 2 341 -3 4200 193 225 33 chr15 39892983 39894230 -61486291 - L1 LINE L1 -5542 1947 461 189 0 0 0 chr15 39894318 39894339 -61486182 + (T)n Simple_repeat Simple_repeat 1 21 0 350 252 207 9 chr15 39894393 39894504 -61486017 + MER5A DNA MER1_type 57 189 0 290 180 82 0 chr15 39894512 39894573 -61485948 - MER5B DNA MER1_type 0 178 113 239 127 109 0 chr15 39895561 39895616 -61484905 - L1MA9 LINE L1 -38 6274 6214 225 313 50 0 chr15 39895770 39895850 -61484671 + MIR SINE MIR 125 208 -54 189 250 0 0 chr15 39895910 39895954 -61484567 - L2 LINE L2 -1278 2036 1993 1452 137 0 0 chr15 39896673 39896878 -61483643 - AluSx SINE Alu -15 295 91 2001 119 14 3 chr15 39896978 39897263 -61483258 + AluSq SINE Alu 12 299 -14 760 159 33 60 chr15 39898758 39898909 -61481612 - Tigger2 DNA MER2_type -10 2708 2562 192 97 0 0 chr15 39898911 39898942 -61481579 + (CA)n Simple_repeat Simple_repeat 2 32 0 824 168 0 0 chr15 39898942 39899067 -61481454 - AluSx SINE Alu -26 284 160 742 130 0 0 chr15 39899067 39899167 -61481354 - AluSx SINE Alu -207 105 6 9653 109 23 9 chr15 39899167 39900547 -61479974 - Tigger2 DNA MER2_type -145 2573 1174 2181 132 0 0 chr15 39900854 39901143 -61479378 - AluSx SINE Alu -23 289 1 325 348 0 0 chr15 39901539 39901631 -61478890 + MIR SINE MIR 33 124 -84 2194 110 7 0 chr15 39902618 39902908 -61477613 + AluSx SINE Alu 5 296 -16 2513 75 0 3 chr15 39902911 39903217 -61477304 + AluY SINE Alu 1 305 -6 545 319 24 0 chr15 39903217 39903386 -61477135 + MIR3 SINE MIR 31 203 -5 201 247 91 0 chr15 39903430 39903507 -61477014 + MER5A DNA MER1_type 10 100 -78 4333 137 101 4 chr15 39903895 39904626 -61475895 + Tigger6a DNA MER2_type 2 803 -280 4670 121 35 33 chr15 39904650 39905338 -61475183 + Tigger1 DNA MER2_type 1 692 -1726 3579 111 61 20 chr15 39905338 39905470 -61475051 - MER1A DNA MER1_type -2173 527 402 2113 126 17 3 chr15 39905470 39905763 -61474758 - AluSx SINE Alu -15 297 1 3579 111 61 20 chr15 39905763 39906136 -61474385 - MER1A DNA MER1_type -2298 402 1 4670 121 35 33 chr15 39906136 39906197 -61474324 + Tigger1 DNA MER2_type 692 751 -1667 964 115 5 105 chr15 39906203 39906403 -61474118 + Tigger1 DNA MER2_type 2143 2322 -96 232 253 38 0 chr15 39907184 39907263 -61473258 + (TA)n Simple_repeat Simple_repeat 2 83 0 520 279 124 30 chr15 39907520 39907753 -61472768 - MIR SINE MIR -2 260 6 187 279 16 0 chr15 39907802 39907863 -61472658 - MIR SINE MIR -6 256 195 641 259 122 35 chr15 39907992 39908386 -61472135 + L1ME LINE L1 5261 5688 -474 186 340 0 0 chr15 39909274 39909327 -61471194 + L2 LINE L2 2922 2974 -340 270 319 0 0 chr15 39909945 39910017 -61470504 - MER63C DNA MER1_type 0 931 860 2025 127 3 49 chr15 39910071 39910395 -61470126 - AluSx SINE Alu -3 309 1 4300 165 87 13 chr15 39910405 39911304 -61469217 - L1MB4 LINE L1 0 6180 5215 2437 168 108 33 chr15 39911320 39911398 -61469123 - MER63C DNA MER1_type -192 868 797 1686 157 44 4 chr15 39911398 39911672 -61468849 - AluJb SINE Alu -27 285 1 2437 168 108 33 chr15 39911672 39912166 -61468355 - MER63C DNA MER1_type -263 797 253 319 269 90 0 chr15 39912197 39912275 -61468246 + L2 LINE L2 3147 3231 -41 263 222 42 0 chr15 39912270 39912342 -61468179 + MIR SINE MIR 77 151 -111 * 525 118 0 0 chr15 39912466 39912542 -61467979 + AluJ/FRAM SINE Alu 225 300 -12 29 28 0 0 chr15 39912660 39912696 -61467825 + AT_rich Low_complexity Low_complexity 1 36 0 2217 124 0 3 chr15 39912874 39913225 -61467296 - AluSq SINE Alu 0 350 1 1987 140 7 0 chr15 39913485 39913788 -61466733 + AluSx SINE Alu 1 305 0 324 134 45 2 chr15 39914772 39914999 -61465522 + AluJb SINE Alu 4 295 -7 2141 125 3 3 chr15 39915095 39915398 -61465123 - AluSx SINE Alu -9 303 1 1835 178 0 20 chr15 39916397 39916700 -61463821 + AluJo SINE Alu 1 297 -15 661 200 89 58 chr15 39917031 39917073 -61463448 - MIR SINE MIR -64 198 159 2424 100 0 0 chr15 39917073 39917384 -61463137 - AluSq SINE Alu -2 311 1 661 200 89 58 chr15 39917384 39917531 -61462990 - MIR SINE MIR -103 159 3 1849 74 0 9 chr15 39917752 39917983 -61462538 + AluY SINE Alu 73 301 -10 193 290 97 0 chr15 39918301 39918363 -61462158 - L2 LINE L2 -2 3311 3244 1053 203 0 20 chr15 39918506 39918703 -61461818 - AluJo SINE Alu -91 221 29 2413 82 3 0 chr15 39918772 39919076 -61461445 + AluSq SINE Alu 1 305 -8 550 309 86 33 chr15 39919958 39920320 -61460201 + L2 LINE L2 1932 2312 -1002 240 163 0 0 chr15 39920616 39920659 -61459862 + GA-rich Low_complexity Low_complexity 4 46 0 234 356 0 23 chr15 39920860 39920947 -61459574 + L2 LINE L2 3168 3252 -20 2030 128 50 7 chr15 39921153 39921450 -61459071 + AluSx SINE Alu 1 310 -2 1871 159 7 3 chr15 39922150 39922440 -61458081 - AluJb SINE Alu -21 291 1 197 345 119 0 chr15 39922699 39922783 -61457738 - L2 LINE L2 -19 3253 3160 2326 88 3 0 chr15 39922785 39923093 -61457428 - AluY SINE Alu -2 309 1 2072 139 0 7 chr15 39923272 39923575 -61456946 + AluSx SINE Alu 1 301 -11 1190 221 33 11 chr15 39923618 39923889 -61456632 + AluJo SINE Alu 14 290 -22 2522 65 7 0 chr15 39923894 39924200 -61456321 + AluSp SINE Alu 1 308 -5 36 53 0 0 chr15 39924204 39924261 -61456260 + AT_rich Low_complexity Low_complexity 1 57 0 13961 119 42 18 chr15 39924453 39925955 -61454566 - Tigger1 DNA MER2_type -1 2417 836 2386 125 45 38 chr15 39925955 39926337 -61454184 + MSTA LTR MaLR 1 388 -40 2308 86 36 0 chr15 39926337 39926638 -61453883 - AluSq SINE Alu -1 312 1 2386 125 45 38 chr15 39926638 39926680 -61453841 + MSTA LTR MaLR 388 428 0 13961 119 42 18 chr15 39926680 39927537 -61452984 - Tigger1 DNA MER2_type -1582 836 1 1949 228 75 95 chr15 39927837 39928829 -61451692 - L2 LINE L2 0 3313 2349 522 179 51 0 chr15 39928834 39928967 -61451554 + L1MC4 LINE L1 6398 6560 -1265 1759 192 61 29 chr15 39928985 39929428 -61451093 + LTR2B LTR ERV1 34 490 0 1349 215 27 62 chr15 39929428 39929833 -61450688 + L1MC4a LINE L1 6537 6927 -881 867 110 118 0 chr15 39929834 39929961 -61450560 + AluSq/x SINE Alu 3 144 -169 1512 161 43 8 chr15 39929980 39930234 -61450287 + AluJb SINE Alu 42 304 -8 2181 147 12 20 chr15 39930234 39930858 -61449663 + L1M2 LINE L1 4954 5570 -742 1013 163 0 0 chr15 39930860 39931020 -61449501 + AluJb SINE Alu 137 296 -16 1238 102 38 72 chr15 39931020 39931082 -61449439 + L1M2 LINE L1 5557 5620 -692 2258 112 0 0 chr15 39931082 39931378 -61449143 + AluSx SINE Alu 5 300 -12 1238 102 38 72 chr15 39931378 39931550 -61448971 + L1M2 LINE L1 5620 5783 -529 1423 149 23 5 chr15 39931556 39931777 -61448744 + AluJo SINE Alu 6 230 -82 279 0 0 0 chr15 39931899 39931930 -61448591 + (A)n Simple_repeat Simple_repeat 1 31 0 2196 130 0 0 chr15 39932113 39932414 -61448107 + AluSx SINE Alu 1 301 -11 1668 153 30 34 chr15 39932421 39932716 -61447805 + AluJo SINE Alu 12 305 -7 254 357 123 7 chr15 39933003 39933157 -61447364 - L2 LINE L2 -1 3271 3100 214 204 23 0 chr15 39933333 39933377 -61447144 + L2 LINE L2 3268 3312 -1 24 0 0 0 chr15 39933554 39933578 -61446943 + AT_rich Low_complexity Low_complexity 1 24 0 4273 145 57 23 chr15 39934173 39934199 -61446322 + L1MB7 LINE L1 5093 5117 -1067 2117 132 3 0 chr15 39934199 39934488 -61446033 + AluSx SINE Alu 1 290 -22 4273 145 57 23 chr15 39934488 39935518 -61445003 + L1MB7 LINE L1 5117 6184 0 240 111 0 0 chr15 39935722 39935758 -61444763 + (TCCCC)n Simple_repeat Simple_repeat 4 39 0 2105 118 7 7 chr15 39935758 39936046 -61444475 - AluSx SINE Alu -24 288 1 275 288 0 0 chr15 39936927 39936993 -61443528 - L2 LINE L2 0 3272 3207 20102 73 5 0 chr15 39938151 39941643 -61438878 - L1PA7 LINE L1 -1 6153 2636 2566 101 25 2 chr15 39941643 39942050 -61438471 - L1PA7 LINE L1 -3421 2725 2310 252 0 0 0 chr15 39942050 39942078 -61438443 + (T)n Simple_repeat Simple_repeat 1 28 0 2765 143 98 116 chr15 39942303 39942735 -61437786 - L1MC3 LINE L1 -180 7605 7167 359 253 0 0 chr15 39942735 39942818 -61437703 - MLT1F1 LTR MaLR -448 119 37 2765 143 98 116 chr15 39942818 39943250 -61437271 - L1MC3 LINE L1 -618 7167 6676 298 264 35 35 chr15 39943493 39943580 -61436941 - MIR3 SINE MIR -3 205 119 * 546 283 57 60 chr15 39943552 39943835 -61436686 - L2 LINE L2 -1 3312 3031 1006 307 102 54 chr15 39943939 39944646 -61435875 - L2 LINE L2 -440 2874 2134 197 304 137 0 chr15 39944654 39944756 -61435765 + MIR SINE MIR 129 244 -18 2437 90 0 0 chr15 39945520 39945820 -61434701 + AluSg SINE Alu 1 300 -10 355 225 68 136 chr15 39945841 39946032 -61434489 + MER91A DNA MER1_type 19 196 0 629 255 39 16 chr15 39946439 39946618 -61433903 + MIR3 SINE MIR 24 205 -3 1974 71 104 0 chr15 39947868 39948136 -61432385 - AluSx SINE Alu -16 296 1 284 272 110 136 chr15 39948414 39948605 -61431916 + MIR3 SINE MIR 16 201 -7 1582 136 17 33 chr15 39948952 39949253 -61431268 + L1MB8 LINE L1 5874 6169 -9 2275 66 0 0 chr15 39949271 39949544 -61430977 + AluY SINE Alu 37 309 -2 2188 112 0 13 chr15 39950242 39950545 -61429976 - AluY SINE Alu -12 299 1 193 370 34 76 chr15 39951597 39951716 -61428805 + L2 LINE L2 3126 3239 -33 2299 110 3 0 chr15 39953139 39953438 -61427083 + AluSx SINE Alu 1 300 -12 629 139 148 0 chr15 39953438 39953553 -61426968 - MER2 DNA MER2_type -213 132 1 881 202 70 12 chr15 39953614 39953857 -61426664 - L1M4 LINE L1 -1267 4879 4623 437 284 44 16 chr15 39953909 39954092 -61426429 - L1M4 LINE L1 -2606 3540 3353 1932 112 11 0 chr15 39955054 39955343 -61425178 + AluSp SINE Alu 16 307 0 931 244 138 0 chr15 39955746 39955971 -61424550 + MIR SINE MIR 6 261 -1 253 296 93 37 chr15 39956953 39957061 -61423460 - L2 LINE L2 -8 3264 3151 235 321 82 57 chr15 39957565 39957967 -61422554 - L2 LINE L2 -1546 1768 1357 4640 152 21 33 chr15 39958061 39958145 -61422376 + L1MB7 LINE L1 5100 5184 -1000 1698 197 34 8 chr15 39958145 39958501 -61422020 - MLT1A1 LTR MaLR 0 365 1 4640 152 21 33 chr15 39958501 39959489 -61421032 + L1MB7 LINE L1 5184 6154 -30 5259 127 48 10 chr15 39959696 39960625 -61419896 + L1MD1 LINE L1 5278 6242 0 767 211 0 0 chr15 39960923 39961056 -61419465 + FLAM_C SINE Alu 1 133 0 249 283 127 14 chr15 39961232 39961400 -61419121 + MIR SINE MIR 37 262 0 835 304 45 14 chr15 39961429 39961715 -61418806 - L3 LINE CR1 -42 1535 1241 263 281 97 18 chr15 39961738 39961852 -61418669 + MIR3 SINE MIR 56 178 -30 351 354 23 0 chr15 39961890 39962020 -61418501 - L3 LINE CR1 -376 1201 1069 779 141 16 8 chr15 39962028 39962193 -61418328 + AluJb SINE Alu 153 318 0 435 338 74 13 chr15 39962268 39962499 -61418022 - L3 LINE CR1 -609 968 724 21 36 0 0 chr15 39962521 39962549 -61417972 + AT_rich Low_complexity Low_complexity 1 28 0 2221 99 0 0 chr15 39962613 39962896 -61417625 - AluSx SINE Alu -29 283 1 1492 200 20 30 chr15 39963578 39963883 -61416638 + AluJo SINE Alu 1 302 -10 189 253 0 81 chr15 39964822 39964909 -61415612 + MIR3 SINE MIR 84 163 -45 866 78 0 54 chr15 39965228 39965357 -61415164 - AluSg/x SINE Alu -6 306 185 1751 11 0 0 chr15 39966575 39966837 -61413684 - L1PA3 LINE L1 -681 5474 5213 5922 23 0 0 chr15 39966837 39967517 -61413004 + L1PA3 LINE L1 5472 6155 0 4151 148 60 78 chr15 39969162 39970144 -61410377 + L1MB3 LINE L1 4642 5585 -598 492 214 46 30 chr15 39970144 39970275 -61410246 + FLAM_A SINE Alu 1 133 0 4151 148 60 78 chr15 39970275 39970864 -61409657 + L1MB3 LINE L1 5585 6183 0 223 364 20 0 chr15 39971240 39971339 -61409182 - L2 LINE L2 -1005 2309 2209 25 51 0 0 chr15 39972354 39972393 -61408128 + AT_rich Low_complexity Low_complexity 1 39 0 30 45 0 0 chr15 39972785 39972829 -61407692 + AT_rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr15 39974745 39974782 -61405739 + AT_rich Low_complexity Low_complexity 1 37 0 380 242 30 10 chr15 39974806 39974905 -61405616 + MIR SINE MIR 51 151 -57 928 268 48 78 chr15 39975042 39975415 -61405106 - L3 LINE CR1 -15 1562 1201 233 48 65 145 chr15 39975428 39975490 -61405031 + L1MB8 LINE L1 6106 6162 -16 535 273 14 14 chr15 39976051 39976267 -61404254 + L1MEd LINE L1 3 218 -5901 210 404 20 0 chr15 39976412 39976511 -61404010 - L2 LINE L2 -604 2710 2610 * 446 256 123 8 chr15 39976504 39976677 -61403844 - MIR SINE MIR 0 262 74 186 215 108 32 chr15 39976737 39976830 -61403691 - L2 LINE L2 -764 2550 2451 3061 157 36 19 chr15 39976881 39977466 -61403055 + L1MB5 LINE L1 5580 6174 0 1788 154 35 7 chr15 39977766 39978051 -61402470 - AluSx SINE Alu -19 293 1 706 249 95 83 chr15 39978212 39978465 -61402056 + MIR SINE MIR 1 256 -6 459 0 0 0 chr15 39978468 39978519 -61402002 + (CAT)n Simple_repeat Simple_repeat 2 52 0 312 281 109 16 chr15 39978730 39978858 -61401663 - L2 LINE L2 0 3313 3174 1408 133 40 36 chr15 39978866 39979144 -61401377 - L1MB8 LINE L1 -1 6177 5899 875 281 16 16 chr15 39979394 39979643 -61400878 - MIR SINE MIR -8 254 6 1739 186 3 0 chr15 39980152 39980442 -61400079 + AluJb SINE Alu 1 291 -21 233 369 28 13 chr15 39980892 39981022 -61399499 + MIR SINE MIR 38 168 -40 2006 133 17 10 chr15 39981174 39981468 -61399053 - AluSq SINE Alu -15 298 3 225 94 0 0 chr15 39982081 39982113 -61398408 + (CA)n Simple_repeat Simple_repeat 1 32 0 367 235 25 84 chr15 39983143 39983262 -61397259 - L2 LINE L2 -13 3300 3189 2489 86 0 0 chr15 39983658 39983960 -61396561 - AluSc SINE Alu -7 302 1 2484 61 0 0 chr15 39984305 39984602 -61395919 - AluY SINE Alu -14 297 1 284 260 130 41 chr15 39985779 39985925 -61394596 + MER5A DNA MER1_type 2 160 -29 1903 170 0 7 chr15 39985929 39986235 -61394286 - AluJo SINE Alu -8 304 1 2261 110 3 0 chr15 39986655 39986955 -61393566 + AluSp SINE Alu 1 301 -12 1917 143 0 11 chr15 39987393 39987679 -61392842 - AluSx SINE Alu -29 283 1 464 280 44 93 chr15 39988821 39989037 -61391484 - MLT1I LTR MaLR -26 383 189 2179 112 20 0 chr15 39989037 39989341 -61391180 - AluY SINE Alu -1 310 1 464 280 44 93 chr15 39989341 39989467 -61391054 - MLT1I LTR MaLR -220 189 58 364 247 47 0 chr15 39990392 39990477 -61390044 + L2 LINE L2 3225 3313 0 448 194 111 56 chr15 39991099 39991243 -61389278 - MER5A DNA MER1_type -3 186 35 21 36 0 0 chr15 39991590 39991618 -61388903 + AT_rich Low_complexity Low_complexity 1 28 0 2135 137 25 25 chr15 39992730 39993095 -61387426 - MLT1A1 LTR MaLR 0 365 1 6266 68 13 43 chr15 39993351 39994801 -61385720 + L1PA14 LINE L1 4743 6161 0 635 343 45 0 chr15 39995088 39995333 -61385188 + MIR SINE MIR 2 257 -5 663 274 73 5 chr15 39997834 39998038 -61382483 + MIR SINE MIR 1 218 -44 315 233 176 19 chr15 39998078 39998237 -61382284 - L1M4 LINE L1 -1891 4255 4072 361 341 15 7 chr15 39998242 39998377 -61382144 + L2 LINE L2 1839 1974 -1340 6656 56 24 0 chr15 39998389 39998860 -61381661 - L1PA7 LINE L1 0 6154 5696 2166 113 0 26 chr15 39998860 39999170 -61381351 - AluSc SINE Alu -6 303 2 6656 56 24 0 chr15 39999170 39999915 -61380606 - L1PA7 LINE L1 -458 5696 4926 180 0 0 0 chr15 39999918 39999938 -61380583 + (T)n Simple_repeat Simple_repeat 1 20 0 11517 168 15 95 chr15 39999957 40003082 -61377439 + L1P LINE L1 10 2882 -3264 184 118 20 20 chr15 40004342 40004393 -61376128 + A-rich Low_complexity Low_complexity 5 55 0 2446 85 0 0 chr15 40004478 40004773 -61375748 + AluSc SINE Alu 1 295 -14 717 193 143 37 chr15 40005463 40005624 -61374897 - MER5A DNA MER1_type 0 189 12 2155 119 0 16 chr15 40006273 40006591 -61373930 - AluSq SINE Alu 0 313 1 2377 87 0 3 chr15 40007103 40007412 -61373109 + AluSc SINE Alu 1 308 -1 384 265 63 29 chr15 40008024 40008169 -61372352 + MER5A DNA MER1_type 7 144 -34 1204 157 0 60 chr15 40009748 40009997 -61370524 - L1MB8 LINE L1 -6 6172 5939 1591 143 59 0 chr15 40009998 40010284 -61370237 + Tigger3(Golem) DNA MER2_type 1 303 -2726 4082 116 81 26 chr15 40010285 40011054 -61369467 + Tigger3(Golem) DNA MER2_type 2218 3028 -1 997 175 74 0 chr15 40011054 40011271 -61369250 - L1MB8 LINE L1 -255 5923 5691 2026 148 27 0 chr15 40011313 40011611 -61368910 - AluJb SINE Alu -6 306 1 243 106 170 0 chr15 40011709 40011756 -61368765 + MLT1A1 LTR MaLR 259 313 -52 968 144 31 2 chr15 40012103 40012350 -61368171 + MER2 DNA MER2_type 23 316 -29 23 0 0 0 chr15 40012437 40012460 -61368061 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr15 40012511 40012531 -61367990 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 297 331 97 23 chr15 40012535 40012817 -61367704 + L2 LINE L2 2749 3047 -225 213 291 148 82 chr15 40012874 40013056 -61367465 + L2 LINE L2 3064 3257 -15 723 163 7 7 chr15 40013079 40013232 -61367289 - Charlie1 DNA MER1_type -1 2760 2608 313 186 70 12 chr15 40013249 40013335 -61367186 - Charlie1 DNA MER1_type -2655 106 16 469 303 27 5 chr15 40014254 40014442 -61366079 + MER58C DNA MER1_type 1 192 -23 469 200 85 62 chr15 40014460 40014590 -61365931 + FLAM_A SINE Alu 1 133 0 2346 89 3 16 chr15 40014598 40014914 -61365607 + AluSp SINE Alu 1 312 -1 1570 170 15 11 chr15 40014917 40015188 -61365333 + AluJo SINE Alu 3 274 -38 495 0 0 0 chr15 40015201 40015256 -61365265 + (TAAAA)n Simple_repeat Simple_repeat 2 56 0 257 231 0 31 chr15 40015277 40015342 -61365179 + MIR SINE MIR 200 262 0 279 70 0 0 chr15 40015509 40015552 -61364969 - L1MB4 LINE L1 -2 6178 6136 * 394 218 73 0 chr15 40015550 40015660 -61364861 - L1MCa LINE L1 -4760 1666 1549 204 150 0 25 chr15 40015660 40015700 -61364821 + (TTTC)n Simple_repeat Simple_repeat 1 39 0 2893 132 58 37 chr15 40015700 40016268 -61364253 - L1MC1 LINE L1 0 6333 5754 1040 129 0 54 chr15 40016349 40016423 -61364098 - L1MC1 LINE L1 -575 5758 5682 977 191 18 0 chr15 40016423 40016591 -61363930 - FAM SINE Alu -4 171 1 1040 129 0 54 chr15 40016591 40016702 -61363819 - L1MC1 LINE L1 -651 5682 5583 355 262 213 7 chr15 40016974 40017115 -61363406 + MIR SINE MIR 56 225 -37 214 235 20 0 chr15 40017368 40017419 -61363102 + (TA)n Simple_repeat Simple_repeat 2 53 0 2296 80 23 0 chr15 40018075 40018377 -61362144 - AluY SINE Alu -2 309 1 2353 64 3 10 chr15 40018704 40019002 -61361519 - AluY SINE Alu -15 296 1 1067 79 0 0 chr15 40019002 40019129 -61361392 - AluSg SINE Alu -183 127 1 380 278 19 127 chr15 40019550 40019627 -61360894 + MIR SINE MIR 18 102 -160 1903 110 11 73 chr15 40019627 40019982 -61360539 - L1MA2 LINE L1 0 6304 5972 380 278 19 127 chr15 40019982 40020116 -61360405 + MIR SINE MIR 102 206 -56 733 289 11 66 chr15 40021015 40021365 -61359156 - MER102b DNA MER1_type -1 340 10 265 123 31 0 chr15 40022399 40022464 -61358057 + (TA)n Simple_repeat Simple_repeat 1 67 0 180 0 0 0 chr15 40022484 40022504 -61358017 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 741 167 27 47 chr15 40022507 40022657 -61357864 - FRAM SINE Alu -30 146 1 2211 88 0 72 chr15 40023036 40023356 -61357165 + AluSx SINE Alu 1 297 -15 288 111 0 0 chr15 40024212 40024257 -61356264 + (T)n Simple_repeat Simple_repeat 1 45 0 1236 113 0 21 chr15 40024386 40024572 -61355949 + AluY SINE Alu 124 305 -6 21 0 0 0 chr15 40024885 40024906 -61355615 + AT_rich Low_complexity Low_complexity 1 21 0 974 137 72 13 chr15 40025089 40025242 -61355279 - FRAM SINE Alu -15 161 1 623 295 112 8 chr15 40025381 40025416 -61355105 - L2 LINE L2 -192 3121 3091 2272 103 0 3 chr15 40025416 40025717 -61354804 - AluSx SINE Alu -12 300 1 623 295 112 8 chr15 40025717 40025949 -61354572 - L2 LINE L2 -222 3091 2826 398 293 57 0 chr15 40025939 40026062 -61354459 - L2 LINE L2 -589 2725 2596 * 1694 114 8 4 chr15 40026515 40026751 -61353770 + AluSg SINE Alu 1 237 -73 353 151 0 0 chr15 40026854 40026907 -61353614 - Alu SINE Alu -246 54 2 483 278 94 48 chr15 40026985 40027165 -61353356 + Tigger8 DNA MER2_type 271 441 -225 2233 110 0 0 chr15 40027165 40027457 -61353064 - AluSx SINE Alu -20 292 1 483 278 94 48 chr15 40027457 40027650 -61352871 + Tigger8 DNA MER2_type 441 661 -5 512 235 0 0 chr15 40027820 40027918 -61352603 + FLAM_A SINE Alu 22 119 -23 467 315 13 88 chr15 40029821 40030129 -61350392 - L2 LINE L2 -43 3229 2945 574 148 117 16 chr15 40030138 40030266 -61350255 + L1MB4 LINE L1 6032 6172 -8 226 272 37 25 chr15 40030307 40030388 -61350133 - L2 LINE L2 -450 2864 2783 279 372 88 14 chr15 40030395 40030758 -61349763 - L2 LINE L2 -639 2675 2286 2254 97 3 7 chr15 40031086 40031386 -61349135 + AluSx SINE Alu 2 300 -12 364 234 103 7 chr15 40031562 40031707 -61348814 - L1ME4a LINE L1 -225 5896 5738 252 289 133 61 chr15 40032170 40032350 -61348171 + L2 LINE L2 2924 3116 -156 279 114 0 0 chr15 40033660 40033704 -61346817 + (T)n Simple_repeat Simple_repeat 1 44 0 1006 174 0 0 chr15 40034463 40034624 -61345897 - AluJb SINE Alu -10 302 142 28 29 0 0 chr15 40034624 40034659 -61345862 + AT_rich Low_complexity Low_complexity 1 35 0 1944 135 24 14 chr15 40034660 40034949 -61345572 - AluJb SINE Alu -20 292 1 585 258 16 8 chr15 40035486 40035610 -61344911 + L2 LINE L2 3187 3311 -2 990 351 107 33 chr15 40035660 40036223 -61344298 - L2 LINE L2 -359 2955 2435 2265 61 37 20 chr15 40036223 40036517 -61344004 - AluY SINE Alu -12 299 1 990 351 107 33 chr15 40036517 40037079 -61343442 - L2 LINE L2 -879 2435 1747 221 0 35 0 chr15 40037340 40037369 -61343152 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 2101 132 23 0 chr15 40037403 40037707 -61342814 + AluSx SINE Alu 1 311 -1 318 307 80 22 chr15 40037796 40037971 -61342550 + L1MC/D LINE L1 4369 4532 -1614 1549 143 38 56 chr15 40037971 40038287 -61342234 + AluJb SINE Alu 1 311 0 2027 73 45 73 chr15 40038293 40038607 -61341914 + AluY SINE Alu 1 305 -6 318 307 80 22 chr15 40038607 40038648 -61341873 + L1MC/D LINE L1 4536 4606 -1540 2248 109 3 0 chr15 40038752 40039045 -61341476 + AluSq SINE Alu 1 294 -19 25 0 0 0 chr15 40039259 40039284 -61341237 + AT_rich Low_complexity Low_complexity 1 25 0 303 313 87 7 chr15 40039414 40039564 -61340957 + L1MC/D LINE L1 5320 5481 -761 737 128 0 8 chr15 40039679 40039796 -61340725 - AluSp/q SINE Alu -11 302 187 843 207 0 0 chr15 40039959 40040104 -61340417 + FRAM SINE Alu 1 140 -36 198 0 0 0 chr15 40040112 40040134 -61340387 + (TAA)n Simple_repeat Simple_repeat 1 22 0 298 370 46 17 chr15 40040146 40040319 -61340202 - L3 LINE CR1 -1169 408 231 1886 141 3 34 chr15 40041902 40042200 -61338321 - AluSx SINE Alu -23 289 1 24 0 0 0 chr15 40042372 40042396 -61338125 + AT_rich Low_complexity Low_complexity 1 24 0 1837 164 10 7 chr15 40042399 40042697 -61337824 + AluJb SINE Alu 1 299 -13 2166 119 10 0 chr15 40043008 40043311 -61337210 + AluSq SINE Alu 3 308 -5 22 0 0 0 chr15 40044329 40044351 -61336170 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr15 40045717 40045745 -61334776 + AT_rich Low_complexity Low_complexity 1 28 0 3843 149 17 59 chr15 40045955 40046627 -61333894 + L1MB3 LINE L1 5340 6039 -144 3680 114 8 4 chr15 40046627 40047152 -61333369 - MER1A DNA MER1_type 0 527 1 3843 149 17 59 chr15 40047152 40047248 -61333273 + L1MB3 LINE L1 6039 6137 -46 1791 188 0 0 chr15 40047248 40047536 -61332985 - AluJo SINE Alu -22 290 3 276 53 0 0 chr15 40047541 40047579 -61332942 + (TATG)n Simple_repeat Simple_repeat 2 39 0 2151 113 0 17 chr15 40047579 40047870 -61332651 - AluSg SINE Alu -24 286 1 3843 149 17 59 chr15 40047870 40047925 -61332596 + L1MB3 LINE L1 6080 6136 -47 720 73 0 0 chr15 40047925 40048053 -61332468 + AluSc SINE Alu 183 310 0 643 62 0 0 chr15 40048105 40048186 -61332335 + AluY SINE Alu 1 81 -230 247 188 0 0 chr15 40048286 40048334 -61332187 - Alu SINE Alu -124 178 131 2432 79 3 0 chr15 40048513 40048817 -61331704 + AluSp SINE Alu 1 305 -8 2156 48 3 35 chr15 40048820 40049131 -61331390 + AluY SINE Alu 1 301 -10 394 275 36 43 chr15 40049247 40049385 -61331136 + L2 LINE L2 3136 3272 0 710 232 23 161 chr15 40050606 40051077 -61329444 + LTR67 LTR ERVL 102 636 79 2107 99 0 11 chr15 40051077 40051360 -61329161 + AluSx SINE Alu 1 280 -32 225 0 0 0 chr15 40051360 40051385 -61329136 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 710 232 23 161 chr15 40051385 40051433 -61329088 + LTR67 LTR ERVL 497 550 -7 1957 151 17 0 chr15 40051494 40051793 -61328728 + AluJb SINE Alu 1 304 -8 321 248 9 19 chr15 40051877 40051982 -61328539 - L1ME LINE L1 -392 5729 5626 2190 133 3 0 chr15 40052444 40052752 -61327769 + AluSx SINE Alu 2 310 -2 1214 174 0 24 chr15 40053112 40053324 -61327197 + AluJb SINE Alu 87 293 -19 2206 107 0 7 chr15 40053535 40053833 -61326688 - AluSx SINE Alu -16 296 1 25 0 0 0 chr15 40055956 40055981 -61324540 + AT_rich Low_complexity Low_complexity 1 25 0 713 186 32 0 chr15 40056033 40056157 -61324364 - FLAM_A SINE Alu -5 128 1 2052 139 7 0 chr15 40056185 40056480 -61324041 + AluSx SINE Alu 1 297 -15 2049 129 3 3 chr15 40057720 40058006 -61322515 - AluSx SINE Alu -26 286 1 1673 149 0 84 chr15 40058037 40058360 -61322161 - AluJo SINE Alu -16 296 1 31 44 0 0 chr15 40058669 40058714 -61321807 + AT_rich Low_complexity Low_complexity 1 45 0 1911 139 24 10 chr15 40059468 40059756 -61320765 - AluSx SINE Alu -20 292 1 363 358 9 0 chr15 40059916 40060025 -61320496 - MIR SINE MIR -147 115 6 283 226 0 0 chr15 40060732 40060785 -61319736 + MIR SINE MIR 89 141 -67 1766 49 5 0 chr15 40060795 40061018 -61319503 + L1PA8 LINE L1 5940 6163 -9 210 226 0 38 chr15 40061249 40061302 -61319219 + MIR3 SINE MIR 157 207 -1 536 241 0 0 chr15 40061304 40061437 -61319084 + L1MB8 LINE L1 5391 5523 -719 392 264 149 17 chr15 40062413 40062717 -61317804 + L1MDa LINE L1 1607 1990 -4602 1608 134 17 81 chr15 40062911 40063269 -61317252 + L1MB8 LINE L1 5843 6177 -1 22 56 0 0 chr15 40063314 40063350 -61317171 + AT_rich Low_complexity Low_complexity 1 36 0 288 0 0 0 chr15 40063417 40063449 -61317072 + (CA)n Simple_repeat Simple_repeat 2 33 0 291 281 51 63 chr15 40063554 40063728 -61316793 + L1MDa LINE L1 2607 2782 -3758 849 136 8 0 chr15 40063728 40063860 -61316661 + FLAM_C SINE Alu 1 133 0 291 281 51 63 chr15 40063860 40064095 -61316426 + L1MDa LINE L1 2782 3011 -3529 306 296 11 0 chr15 40064124 40064212 -61316309 - L1MC4 LINE L1 -1339 6703 6615 480 288 133 23 chr15 40064223 40064525 -61315996 + L1MDa LINE L1 3045 3379 -3161 575 287 90 29 chr15 40064542 40064715 -61315806 + L1MDa LINE L1 4466 4627 -1913 2058 143 7 13 chr15 40064715 40065023 -61315498 + AluJb SINE Alu 1 306 -6 575 287 90 29 chr15 40065023 40065705 -61314816 + L1MDa LINE L1 4627 5422 -1118 869 333 152 40 chr15 40065738 40066563 -61313958 - L3 LINE CR1 -381 1196 280 2245 102 0 13 chr15 40066926 40067240 -61313281 + AluSg SINE Alu 1 310 0 2219 103 3 0 chr15 40067762 40068072 -61312449 + AluY SINE Alu 1 311 0 23 0 0 0 chr15 40069159 40069182 -61311339 + AT_rich Low_complexity Low_complexity 1 23 0 6637 71 32 5 chr15 40070127 40071695 -61308826 - L1PA10 LINE L1 -16 6152 4551 2588 156 32 55 chr15 40071752 40072311 -61308210 + L1MDa LINE L1 174 719 -5823 791 131 31 56 chr15 40072343 40072395 -61308126 + Tigger1 DNA MER2_type 2 54 -2364 2508 44 0 0 chr15 40072395 40072689 -61307832 - AluY SINE Alu -17 294 1 791 131 31 56 chr15 40072689 40072796 -61307725 + Tigger1 DNA MER2_type 54 157 -2261 * 1013 159 43 0 chr15 40072785 40072993 -61307528 + Tigger1 DNA MER2_type 2202 2418 0 3748 144 38 8 chr15 40072993 40073904 -61306617 + L1MDa LINE L1 1969 2915 -3625 2364 200 32 63 chr15 40073913 40074616 -61305905 + L1MDa LINE L1 4024 4748 -1792 1533 181 23 55 chr15 40074616 40074926 -61305595 + AluJo SINE Alu 1 300 -12 2137 144 0 0 chr15 40074928 40075233 -61305288 + AluSx SINE Alu 1 305 -7 2487 93 0 0 chr15 40075234 40075545 -61304976 + AluY SINE Alu 1 311 0 2364 200 32 63 chr15 40075545 40075729 -61304792 + L1MDa LINE L1 4748 4884 -1656 1138 205 92 7 chr15 40075740 40076043 -61304478 + L1MDa LINE L1 5398 5726 -814 2073 122 10 0 chr15 40076046 40076341 -61304180 + AluSx SINE Alu 1 298 -14 792 267 118 41 chr15 40076341 40076998 -61303523 - L1ME1 LINE L1 -216 5950 5219 4817 149 35 17 chr15 40077010 40077805 -61302716 + L1MB3 LINE L1 5320 6132 -51 1990 125 17 0 chr15 40077805 40078093 -61302428 + AluSq SINE Alu 1 293 -20 4817 149 35 17 chr15 40078093 40078131 -61302390 + L1MB3 LINE L1 6132 6168 -15 374 299 19 0 chr15 40128169 40128276 -61252245 - MIR3 SINE MIR -2 206 98 2420 76 0 0 chr15 40128291 40128581 -61251940 + AluSc SINE Alu 1 290 -19 2111 118 7 3 chr15 40129251 40129547 -61250974 - AluSx SINE Alu -15 297 1 286 103 0 0 chr15 40129604 40129643 -61250878 - U6 snRNA snRNA -66 41 3 433 257 64 0 chr15 40129646 40129755 -61250766 - L2 LINE L2 -8 3305 3190 1714 106 17 0 chr15 40130244 40130480 -61250041 - AluSg/x SINE Alu -2 308 69 1771 143 0 7 chr15 40130580 40130853 -61249668 + AluJo SINE Alu 21 291 -21 2238 102 0 7 chr15 40130991 40131284 -61249237 + AluSc SINE Alu 1 291 -18 260 207 107 107 chr15 40131479 40131600 -61248921 + L2 LINE L2 3193 3313 0 1477 140 133 33 chr15 40131711 40131982 -61248539 + AluJo SINE Alu 1 298 -14 188 135 27 0 chr15 40132253 40132290 -61248231 + CT-rich Low_complexity Low_complexity 1 38 0 329 206 16 0 chr15 40132383 40132446 -61248075 - HAL1 LINE L1 -1 2506 2443 911 204 0 12 chr15 40132446 40132651 -61247870 + AluJb SINE Alu 117 319 0 1643 211 114 69 chr15 40132659 40132775 -61247746 - HAL1 LINE L1 -76 2431 2322 1954 161 0 19 chr15 40132775 40133092 -61247429 - AluJo SINE Alu 0 312 2 1643 211 114 69 chr15 40133092 40133630 -61246891 - HAL1 LINE L1 -185 2322 1747 487 305 61 6 chr15 40133665 40133829 -61246692 - MLT1I LTR MaLR -39 370 198 1761 164 0 7 chr15 40133951 40134238 -61246283 - AluJb SINE Alu -8 304 20 2553 44 7 0 chr15 40134273 40134569 -61245952 - AluY SINE Alu -13 298 1 866 219 87 35 chr15 40134574 40134861 -61245660 - HAL1 LINE L1 -762 1745 1444 2399 86 3 0 chr15 40135805 40136106 -61244415 + AluSg SINE Alu 1 302 -8 2251 128 0 0 chr15 40136182 40136494 -61244027 + AluSx SINE Alu 1 312 0 264 75 50 0 chr15 40136822 40136862 -61243659 + L2 LINE L2 3271 3312 -1 2640 7 0 0 chr15 40136892 40137174 -61243347 + AluYb8 SINE Alu 35 316 -2 405 320 156 17 chr15 40138290 40138521 -61242000 + L2 LINE L2 2599 2861 -453 267 214 18 0 chr15 40138542 40138598 -61241923 + Charlie7 DNA MER1_type 35 91 -2521 2142 119 0 0 chr15 40138764 40139058 -61241463 + AluSx SINE Alu 1 294 -18 2044 135 30 0 chr15 40139212 40139515 -61241006 + AluSx SINE Alu 1 312 0 443 239 134 67 chr15 40139552 40139761 -61240760 + L1ME4a LINE L1 5731 5925 -196 1812 162 37 3 chr15 40139761 40140057 -61240464 + AluJo SINE Alu 3 308 -4 443 239 134 67 chr15 40140057 40140215 -61240306 + L1ME4a LINE L1 5925 6120 -1 209 326 174 57 chr15 40140378 40140694 -61239827 - L2 LINE L2 -20 3252 2900 1769 132 10 84 chr15 40140792 40140962 -61239559 - AluJb SINE Alu -23 289 108 1745 117 23 23 chr15 40140962 40141226 -61239295 - AluSx SINE Alu -13 299 36 2074 129 3 3 chr15 40141228 40141531 -61238990 - AluSc SINE Alu -6 303 1 1769 132 10 84 chr15 40141531 40141667 -61238854 - AluJb SINE Alu -205 107 3 1366 181 36 4 chr15 40141681 40141930 -61238591 - AluJb SINE Alu -9 303 47 2077 150 0 0 chr15 40142786 40143092 -61237429 + AluSx SINE Alu 1 306 -6 385 272 29 15 chr15 40143092 40143228 -61237293 - HAL1b LINE L1 -450 898 761 8521 97 26 25 chr15 40143236 40144497 -61236024 - HSMAR2 DNA Mariner 0 1302 41 1431 168 7 42 chr15 40144525 40144810 -61235711 - AluJo SINE Alu -17 295 21 1894 151 7 0 chr15 40144888 40145167 -61235354 - AluSx SINE Alu -21 291 11 189 0 0 0 chr15 40145172 40145193 -61235328 + (T)n Simple_repeat Simple_repeat 1 21 0 818 314 8 8 chr15 40145575 40145814 -61234707 - MIR SINE MIR -20 242 4 425 247 143 7 chr15 40145834 40145988 -61234533 + MIR SINE MIR 12 186 -76 372 257 59 10 chr15 40145991 40146092 -61234429 + HAL1 LINE L1 1 106 -2401 1633 183 21 0 chr15 40146093 40146378 -61234143 + AluJb SINE Alu 1 291 -21 717 63 31 50 chr15 40146378 40146537 -61233984 + (GGAA)n Simple_repeat Simple_repeat 1 156 0 2529 74 0 0 chr15 40146540 40146851 -61233670 + AluY SINE Alu 1 311 0 1423 233 78 13 chr15 40146857 40147239 -61233282 + HAL1 LINE L1 94 500 -2007 537 220 25 92 chr15 40147229 40147511 -61233010 + HAL1 LINE L1 846 1108 -1399 * 2376 70 0 23 chr15 40147757 40148056 -61232465 + AluY SINE Alu 1 292 -19 777 212 190 0 chr15 40148074 40148258 -61232263 + MIR SINE MIR 18 236 -26 360 340 191 10 chr15 40148398 40148607 -61231914 + MIR SINE MIR 13 259 -3 275 196 0 0 chr15 40149082 40149128 -61231393 + L2 LINE L2 3211 3256 -16 2284 113 60 28 chr15 40149360 40149713 -61230808 + THE1B LTR MaLR 1 364 0 2506 81 0 0 chr15 40150290 40150598 -61229923 + AluSx SINE Alu 1 308 -4 1908 133 0 18 chr15 40150921 40151199 -61229322 + AluSx SINE Alu 13 285 -27 1485 238 57 7 chr15 40151692 40152112 -61228409 + MER113 DNA MER1_type? 78 518 -3 2038 121 3 3 chr15 40152288 40152593 -61227928 + AluSx SINE Alu 1 305 0 559 225 45 18 chr15 40152926 40153037 -61227484 + MER81 DNA DNA 1 114 0 2391 108 0 0 chr15 40153055 40153361 -61227160 + AluSx SINE Alu 1 306 -6 2486 73 0 0 chr15 40153761 40154063 -61226458 + AluY SINE Alu 1 302 -9 2045 125 4 0 chr15 40154074 40154380 -61226141 + AluSg SINE Alu 1 307 0 2128 110 0 27 chr15 40154544 40154845 -61225676 - AluSg SINE Alu -17 293 1 725 161 51 22 chr15 40154878 40155015 -61225506 - L1M4 LINE L1 -354 5824 5684 1583 157 64 4 chr15 40155350 40155631 -61224890 - AluSx SINE Alu -14 298 1 213 193 35 18 chr15 40156380 40156437 -61224084 + (CAAA)n Simple_repeat Simple_repeat 2 59 0 1411 132 29 0 chr15 40156443 40156647 -61223874 - AluJo SINE Alu -102 210 1 796 153 186 77 chr15 40157229 40157412 -61223109 - MER20 DNA MER1_type -16 203 1 735 197 8 8 chr15 40157414 40157546 -61222975 + FLAM_A SINE Alu 1 132 -1 2593 62 0 0 chr15 40157593 40157900 -61222621 - AluY SINE Alu 0 311 5 728 142 0 0 chr15 40158011 40158124 -61222397 + L1MB4 LINE L1 6063 6175 -5 2281 103 0 0 chr15 40158124 40158415 -61222106 - AluSg SINE Alu -19 291 1 1739 175 10 29 chr15 40158444 40158753 -61221768 + AluJo SINE Alu 1 303 -9 270 268 149 13 chr15 40159023 40159110 -61221411 - MIR3 SINE MIR -30 178 79 28508 25 0 1 chr15 40160055 40163993 -61216528 + L1PA2 LINE L1 2217 6153 -2 180 77 0 0 chr15 40164109 40164135 -61216386 + (CATGT)n Simple_repeat Simple_repeat 1 26 0 244 278 56 0 chr15 40164655 40164727 -61215794 - MIR SINE MIR -91 171 96 1869 231 82 24 chr15 40165068 40165823 -61214698 + L1ME3A LINE L1 4628 5438 -726 841 152 0 36 chr15 40165826 40166006 -61214515 + AluJo/FLAM SINE Alu 1 133 -169 1311 185 0 4 chr15 40166006 40166238 -61214283 + AluJo SINE Alu 82 312 0 1262 255 56 61 chr15 40166238 40166572 -61213949 + L1ME3A LINE L1 5429 5762 -408 2424 83 0 3 chr15 40166572 40166884 -61213637 + AluY SINE Alu 1 311 0 1262 255 56 61 chr15 40166884 40166977 -61213544 + L1ME3A LINE L1 5762 5854 -316 486 223 87 98 chr15 40167348 40167613 -61212908 + L1ME3A LINE L1 5909 6170 0 2299 97 0 7 chr15 40167865 40168165 -61212356 + AluSg SINE Alu 1 298 -12 274 257 122 14 chr15 40168293 40168441 -61212080 - L2 LINE L2 -1414 1900 1737 1407 174 7 56 chr15 40168590 40168860 -61211661 - AluJo SINE Alu -55 257 1 2324 82 23 7 chr15 40168864 40169169 -61211352 - AluSg SINE Alu 0 310 1 487 313 69 69 chr15 40169255 40169543 -61210978 + L2 LINE L2 2980 3267 -5 2102 118 10 0 chr15 40169864 40170160 -61210361 - AluSx SINE Alu -13 299 1 2374 82 0 19 chr15 40170174 40170491 -61210030 - AluY SINE Alu 0 311 1 2391 76 3 3 chr15 40170641 40170943 -61209578 + AluSg1 SINE Alu 1 302 -7 499 254 58 58 chr15 40170943 40171081 -61209440 - L1PB4 LINE L1 -4 6152 6011 1972 158 3 0 chr15 40171438 40171736 -61208785 + AluJb SINE Alu 1 299 -13 1744 163 67 0 chr15 40172095 40172365 -61208156 - AluJo SINE Alu -24 288 1 2194 105 0 7 chr15 40173074 40173368 -61207153 - AluSg1 SINE Alu -17 292 1 2085 69 0 0 chr15 40173379 40173655 -61206866 - AluY SINE Alu 0 313 38 2019 92 44 20 chr15 40173705 40173999 -61206522 - AluSg SINE Alu -9 301 1 1890 163 3 3 chr15 40174009 40174304 -61206217 - AluJb SINE Alu -17 295 1 398 215 37 47 chr15 40174954 40175061 -61205460 - MIR SINE MIR -66 196 91 45 19 0 0 chr15 40175220 40175272 -61205249 + AT_rich Low_complexity Low_complexity 1 52 0 3140 183 20 161 chr15 40175309 40175426 -61205095 + L1MC4a LINE L1 6871 7003 -805 1974 125 3 34 chr15 40175426 40175721 -61204800 + AluSx SINE Alu 1 286 -26 695 12 12 0 chr15 40175722 40175806 -61204715 + (TAGA)n Simple_repeat Simple_repeat 3 87 0 3140 183 20 161 chr15 40175806 40175977 -61204544 + L1MC4a LINE L1 7003 7196 -612 2314 104 3 0 chr15 40175977 40176284 -61204237 + AluSq SINE Alu 1 308 -5 3140 183 20 161 chr15 40176284 40176574 -61203947 + L1MC4a LINE L1 7196 7525 -283 887 173 0 0 chr15 40176574 40176707 -61203814 + FLAM_C SINE Alu 1 133 0 3140 183 20 161 chr15 40176707 40176742 -61203779 + L1MC4a LINE L1 7525 7563 -245 2462 85 0 3 chr15 40176742 40177048 -61203473 + AluSc SINE Alu 1 305 -4 3140 183 20 161 chr15 40177048 40177719 -61202802 + L1MC4a LINE L1 7563 7808 0 2232 97 10 3 chr15 40177723 40178013 -61202508 + AluSx SINE Alu 1 292 -20 619 233 0 0 chr15 40178222 40178338 -61202183 - FLAM_A SINE Alu -17 116 1 219 229 33 0 chr15 40178418 40178479 -61202042 + (TA)n Simple_repeat Simple_repeat 2 64 0 2288 83 3 3 chr15 40179526 40179815 -61200706 + AluSq SINE Alu 1 289 -24 214 171 0 0 chr15 40179815 40179850 -61200671 + (CATATA)n Simple_repeat Simple_repeat 3 37 0 244 284 0 0 chr15 40179850 40179938 -61200583 - L1MC4 LINE L1 -1339 6703 6616 20816 43 52 3 chr15 40180022 40182611 -61197910 + L1P LINE L1 13 2728 -3418 487 153 0 0 chr15 40182720 40182805 -61197716 - MIR SINE MIR -67 195 111 810 183 0 0 chr15 40182806 40182937 -61197584 + FLAM_C SINE Alu 3 133 0 2085 127 0 0 chr15 40182950 40183233 -61197288 - AluSx SINE Alu -27 285 3 22 35 0 0 chr15 40183236 40183265 -61197256 + AT_rich Low_complexity Low_complexity 1 29 0 355 216 226 0 chr15 40183269 40183371 -61197150 - MIR SINE MIR -136 126 2 2109 122 0 3 chr15 40183544 40183850 -61196671 - AluSq SINE Alu 0 305 1 457 135 144 0 chr15 40185093 40185197 -61195324 + L1MA8 LINE L1 6163 6281 -10 615 154 18 9 chr15 40185230 40185340 -61195181 - FLAM_A SINE Alu -12 130 20 575 115 0 0 chr15 40185916 40185994 -61194527 + AluSp/q SINE Alu 216 293 -20 213 39 0 0 chr15 40185994 40186020 -61194501 + (TA)n Simple_repeat Simple_repeat 2 27 0 458 292 48 12 chr15 40186679 40186741 -61193780 + MER5B DNA MER1_type 1 59 -119 216 0 0 0 chr15 40186741 40186765 -61193756 + (TA)n Simple_repeat Simple_repeat 2 25 0 458 292 48 12 chr15 40186765 40186870 -61193651 + MER5B DNA MER1_type 59 174 -4 513 106 150 9 chr15 40186912 40187025 -61193496 - MER106A DNA MER1_type 0 236 108 543 207 9 26 chr15 40187072 40187188 -61193333 - AluJo SINE Alu -105 207 94 21 36 0 0 chr15 40187216 40187244 -61193277 + AT_rich Low_complexity Low_complexity 1 28 0 2319 82 3 36 chr15 40187244 40187550 -61192971 + AluSq SINE Alu 1 296 -17 1108 260 60 27 chr15 40187607 40187907 -61192614 - MLT1I LTR MaLR -21 388 79 2164 78 3 27 chr15 40188170 40188466 -61192055 + AluY SINE Alu 5 293 -18 2465 65 0 0 chr15 40188962 40189256 -61191265 + AluY SINE Alu 1 294 -17 2452 90 0 0 chr15 40190603 40190914 -61189607 - AluSq SINE Alu -2 311 1 21 0 0 0 chr15 40191010 40191031 -61189490 + AT_rich Low_complexity Low_complexity 1 21 0 835 204 11 17 chr15 40191351 40191527 -61188994 + MER5B DNA MER1_type 4 178 0 2008 150 0 16 chr15 40191760 40192073 -61188448 + AluSq SINE Alu 1 308 -5 286 197 84 0 chr15 40192434 40192505 -61188016 - MIR SINE MIR -67 195 119 315 0 0 0 chr15 40192591 40192626 -61187895 + (TG)n Simple_repeat Simple_repeat 1 35 0 2237 118 0 10 chr15 40192704 40193009 -61187512 - AluSq SINE Alu -11 302 1 1051 85 0 0 chr15 40193524 40193654 -61186867 + AluSg/x SINE Alu 163 292 -18 2275 103 0 13 chr15 40193667 40193803 -61186718 + AluSx SINE Alu 1 137 -175 2075 102 27 7 chr15 40193803 40194098 -61186423 + AluSp SINE Alu 1 301 -12 2275 103 0 13 chr15 40194098 40194263 -61186258 + AluSx SINE Alu 137 298 -14 203 256 0 0 chr15 40194402 40194441 -61186080 + L2 LINE L2 2582 2620 -694 891 105 0 0 chr15 40194527 40194651 -61185870 - AluSg/x SINE Alu -4 308 185 608 89 22 0 chr15 40194655 40194745 -61185776 - AluSc SINE Alu -212 97 6 250 364 43 67 chr15 40194746 40195055 -61185466 + L2 LINE L2 2684 2981 -291 1717 167 0 46 chr15 40195055 40195390 -61185131 - AluJb SINE Alu 0 312 1 250 364 43 67 chr15 40195390 40195578 -61184943 + L2 LINE L2 2981 3172 -100 1036 211 0 0 chr15 40196400 40196575 -61183946 - FAM SINE Alu 0 175 1 7246 52 4 3 chr15 40196672 40198199 -61182322 + L1PA6 LINE L1 4627 6154 0 2132 213 63 27 chr15 40198401 40198916 -61181605 - HsTC2c DNA Tc2 -1259 639 103 1525 76 0 0 chr15 40198916 40199100 -61181421 + AluSq SINE Alu 5 188 -125 286 130 0 0 chr15 40199100 40199146 -61181375 + AluSq SINE Alu 254 299 -1 3541 202 21 70 chr15 40199251 40200270 -61180251 + LTR5 LTR ERVK 1 969 0 967 182 0 17 chr15 40200496 40200672 -61179849 + AluJb SINE Alu 136 308 -4 2138 58 4 0 chr15 40201032 40201289 -61179232 + AluY SINE Alu 1 258 -53 29 0 0 0 chr15 40201820 40201849 -61178672 + GC_rich Low_complexity Low_complexity 1 29 0 1363 114 5 30 chr15 40202135 40202199 -61178322 - AluSp SINE Alu -116 197 133 2430 69 0 16 chr15 40202199 40202504 -61178017 - AluY SINE Alu -11 300 1 1363 114 5 30 chr15 40202504 40202641 -61177880 - AluSp SINE Alu -180 133 1 798 191 7 0 chr15 40202648 40202795 -61177726 - FAM SINE Alu -15 170 23 2302 98 3 0 chr15 40202840 40203135 -61177386 - AluSc SINE Alu -13 296 1 2403 77 3 3 chr15 40203208 40203505 -61177016 - AluSq SINE Alu -16 297 1 1830 171 0 3 chr15 40203573 40203866 -61176655 - AluJo SINE Alu -20 292 1 1720 192 0 7 chr15 40203867 40204159 -61176362 - AluJo SINE Alu -22 290 1 325 212 152 0 chr15 40204327 40204426 -61176095 - MIR SINE MIR -9 253 140 2403 84 7 0 chr15 40204653 40204952 -61175569 - AluSc SINE Alu -8 301 1 283 111 0 0 chr15 40204953 40204998 -61175523 - AluJo SINE Alu -7 295 251 1178 168 20 5 chr15 40204998 40205194 -61175327 - AluJo SINE Alu -113 199 1 406 244 63 24 chr15 40205279 40205406 -61175115 + MLT1J LTR MaLR 377 508 -3 309 237 102 42 chr15 40205409 40205527 -61174994 - MIR SINE MIR -119 143 19 717 175 76 29 chr15 40205597 40205768 -61174753 - LTR16A LTR ERVL -256 194 16 268 318 28 9 chr15 40205797 40205904 -61174617 - MER117 DNA MER1_type -32 165 57 2208 120 0 0 chr15 40205907 40206208 -61174313 - AluSg SINE Alu -9 301 1 1151 227 25 43 chr15 40206254 40206532 -61173989 + LTR16A LTR ERVL 178 450 0 550 271 78 92 chr15 40206687 40207054 -61173467 + MLT1K LTR MaLR 154 516 -72 2369 94 7 0 chr15 40207054 40207352 -61173169 - AluSg SINE Alu -10 300 1 550 271 78 92 chr15 40207352 40207420 -61173101 + MLT1K LTR MaLR 516 583 -5 2338 109 0 0 chr15 40207650 40207954 -61172567 - AluSc SINE Alu -5 304 1 1785 145 13 35 chr15 40208100 40208417 -61172104 + AluJb SINE Alu 1 310 -2 3050 126 84 0 chr15 40208515 40209015 -61171506 - L1MC3 LINE L1 0 7785 7244 2889 13 0 0 chr15 40209154 40209465 -61171056 + AluY SINE Alu 1 311 0 215 167 347 0 chr15 40209510 40209582 -61170939 + MIR SINE MIR 65 161 -101 1090 138 0 0 chr15 40209724 40209884 -61170637 - AluSg/x SINE Alu -16 294 135 202 245 0 0 chr15 40210556 40210605 -61169916 + MIR SINE MIR 93 141 -121 1194 45 0 0 chr15 40211244 40211401 -61169120 + (GA)n Simple_repeat Simple_repeat 1 157 0 2286 87 3 7 chr15 40213309 40213629 -61166892 - AluSp SINE Alu 0 319 1 993 166 41 6 chr15 40213635 40213804 -61166717 - FAM SINE Alu 0 175 1 427 266 26 0 chr15 40214410 40214523 -61165998 - MER103 DNA DNA -43 123 8 231 114 0 0 chr15 40214694 40214729 -61165792 + (TA)n Simple_repeat Simple_repeat 2 36 0 2366 82 3 0 chr15 40214729 40215022 -61165499 - AluY SINE Alu -17 294 1 629 192 23 15 chr15 40215047 40215177 -61165344 - FLAM_C SINE Alu 0 133 3 1759 164 30 7 chr15 40215329 40215634 -61164887 - AluJo SINE Alu 0 312 1 348 169 136 0 chr15 40215689 40215748 -61164773 - AluJ/FLAM SINE Alu -235 67 1 3779 134 108 143 chr15 40215752 40216322 -61164199 - L1MC3 LINE L1 -27 7758 7169 227 296 57 0 chr15 40216322 40216410 -61164111 - MLT1F1 LTR MaLR -442 125 33 3779 134 108 143 chr15 40216410 40216822 -61163699 - L1MC3 LINE L1 -616 7169 6727 1802 112 34 99 chr15 40216822 40216959 -61163562 + AluSx SINE Alu 1 145 -167 2354 84 7 7 chr15 40216959 40217256 -61163265 + AluSg SINE Alu 1 297 -13 1802 112 34 99 chr15 40217256 40217440 -61163081 + AluSx SINE Alu 145 301 -11 3779 134 108 143 chr15 40217440 40217475 -61163046 - L1MC3 LINE L1 -1058 6727 6692 2114 131 3 0 chr15 40217608 40217906 -61162615 - AluSx SINE Alu -13 299 1 1994 164 58 26 chr15 40218048 40218426 -61162095 - MLT1B LTR MaLR 0 390 1 333 47 0 0 chr15 40218438 40218481 -61162040 + (CA)n Simple_repeat Simple_repeat 1 43 0 920 232 0 17 chr15 40218568 40218745 -61161776 - FAM SINE Alu -1 174 1 201 74 0 0 chr15 40218876 40218903 -61161618 + (CA)n Simple_repeat Simple_repeat 2 28 0 182 256 134 12 chr15 40219069 40219151 -61161370 + MIR SINE MIR 143 234 -28 2389 73 0 32 chr15 40220080 40220396 -61160125 - AluY SINE Alu -5 306 1 2362 96 0 10 chr15 40220396 40220697 -61159824 - AluSg SINE Alu -12 298 1 2334 102 0 37 chr15 40220780 40221104 -61159417 - AluSq SINE Alu -1 312 1 1591 171 72 103 chr15 40221300 40221775 -61158746 + MLT1C LTR MaLR 8 467 0 2119 90 0 0 chr15 40221821 40222087 -61158434 - AluSx SINE Alu -12 300 35 201 286 269 25 chr15 40222121 40222240 -61158281 + MIR3 SINE MIR 2 149 -59 1534 214 23 0 chr15 40222352 40222656 -61157865 + AluJo SINE Alu 1 311 -1 494 188 15 15 chr15 40222673 40222806 -61157715 + GA-rich Low_complexity Low_complexity 1 133 0 645 159 0 9 chr15 40223674 40223781 -61156740 - FRAM SINE Alu -77 99 1 192 184 46 83 chr15 40223784 40223893 -61156628 + L2 LINE L2 1945 2049 -1265 180 351 22 60 chr15 40223950 40224084 -61156437 - L2 LINE L2 0 3313 3185 1030 146 0 7 chr15 40224290 40224481 -61156040 + AluSg/x SINE Alu 131 320 0 1720 166 6 45 chr15 40224903 40225071 -61155450 - AluJo SINE Alu -11 301 149 2072 131 24 0 chr15 40225071 40225368 -61155153 - AluSx SINE Alu -8 304 1 1720 166 6 45 chr15 40225368 40225512 -61155009 - AluJo SINE Alu -163 149 1 9902 115 64 78 chr15 40225514 40225569 -61154952 - Tigger1 DNA MER2_type -628 1790 1736 2433 100 3 0 chr15 40225569 40225880 -61154641 - AluSq SINE Alu -1 312 1 9902 115 64 78 chr15 40225880 40225920 -61154601 - Tigger1 DNA MER2_type -682 1736 1697 1533 183 11 11 chr15 40225920 40226193 -61154328 - AluJo SINE Alu -39 273 1 9902 115 64 78 chr15 40226193 40226348 -61154173 - Tigger1 DNA MER2_type -721 1697 1541 1709 162 39 7 chr15 40226348 40226632 -61153889 - AluJb SINE Alu -19 293 1 9902 115 64 78 chr15 40226632 40226646 -61153875 - Tigger1 DNA MER2_type -877 1541 1528 1844 162 7 0 chr15 40226646 40226936 -61153585 - AluJb SINE Alu -20 292 1 9902 115 64 78 chr15 40226936 40228483 -61152038 - Tigger1 DNA MER2_type -890 1528 1 2412 89 0 0 chr15 40228548 40228850 -61151671 - AluY SINE Alu -9 302 1 3359 140 35 12 chr15 40229380 40229953 -61150568 - L1MB4 LINE L1 -2 6178 5593 771 203 43 0 chr15 40229953 40230091 -61150430 - AluJb SINE Alu -24 288 145 2452 135 30 17 chr15 40230091 40230635 -61149886 + L1MA9 LINE L1 5107 5658 -633 593 133 23 10 chr15 40230635 40230806 -61149715 + L1MA9 LINE L1 5974 6302 -10 717 297 72 14 chr15 40230986 40231208 -61149313 - MIR SINE MIR 0 262 28 2065 140 0 0 chr15 40231230 40231522 -61148999 - AluSx SINE Alu -20 292 1 1100 147 82 82 chr15 40231701 40231769 -61148752 + AluJo SINE Alu 40 107 -205 204 40 0 0 chr15 40231769 40231794 -61148727 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 303 28 0 0 chr15 40231793 40231829 -61148692 + (TA)n Simple_repeat Simple_repeat 1 36 0 1100 147 82 82 chr15 40231794 40231828 -61148693 + AluJo SINE Alu 107 140 -172 315 49 0 0 chr15 40231828 40231869 -61148652 + (CA)n Simple_repeat Simple_repeat 2 42 0 1100 147 82 82 chr15 40231869 40232045 -61148476 + AluJo SINE Alu 139 284 -28 2299 103 0 0 chr15 40232075 40232375 -61148146 + AluSg SINE Alu 1 300 -10 250 278 78 11 chr15 40232849 40232939 -61147582 - MLT1I LTR MaLR -311 98 3 2167 98 0 0 chr15 40233008 40233283 -61147238 - AluSx SINE Alu -32 280 6 558 324 159 22 chr15 40233401 40233990 -61146531 + L2 LINE L2 925 1673 -1641 2142 96 3 23 chr15 40234002 40234137 -61146384 + AluSq SINE Alu 1 137 -176 2287 96 3 3 chr15 40234137 40234438 -61146083 + AluSg SINE Alu 1 301 -9 2142 96 3 23 chr15 40234438 40234603 -61145918 + AluSq SINE Alu 137 295 -18 229 343 121 0 chr15 40234733 40234940 -61145581 + L2 LINE L2 2037 2268 -1046 281 278 14 0 chr15 40234942 40235014 -61145507 + L2 LINE L2 3188 3260 -12 229 247 55 41 chr15 40235091 40235164 -61145357 + L2 LINE L2 3197 3270 -2 2550 78 0 0 chr15 40235294 40235603 -61144918 + AluY SINE Alu 1 309 -2 2343 104 0 0 chr15 40235615 40235914 -61144607 + AluSq SINE Alu 1 299 -14 613 221 0 21 chr15 40236168 40236313 -61144208 + MIR SINE MIR 121 262 0 466 260 120 7 chr15 40236366 40236516 -61144005 + MER5B DNA MER1_type 2 168 -10 409 136 0 0 chr15 40237626 40237685 -61142836 + AluJ SINE Alu 75 133 -179 2355 76 0 3 chr15 40237812 40238114 -61142407 + AluSg SINE Alu 1 301 -9 1042 199 0 5 chr15 40238122 40238313 -61142208 + AluJb SINE Alu 82 271 -41 1142 180 0 6 chr15 40238539 40238722 -61141799 + AluJ SINE Alu 108 289 -23 498 329 110 48 chr15 40238950 40239260 -61141261 + L2 LINE L2 2175 2503 -811 1392 172 132 17 chr15 40239345 40239641 -61140880 - MER58B DNA MER1_type -11 330 1 389 323 82 65 chr15 40239647 40239764 -61140757 + L2 LINE L2 2592 2706 -566 2053 146 0 3 chr15 40239764 40240065 -61140456 + AluSx SINE Alu 1 300 -12 389 323 82 65 chr15 40240065 40240556 -61139965 + L2 LINE L2 2706 3207 -65 1651 179 10 30 chr15 40240557 40240858 -61139663 - AluJo SINE Alu -17 295 1 1807 176 0 7 chr15 40240921 40241227 -61139294 - AluJb SINE Alu -8 304 1 1865 181 0 36 chr15 40241253 40241640 -61138881 - L1MB7 LINE L1 -19 6165 5793 1660 162 23 43 chr15 40241641 40241943 -61138578 - AluJo SINE Alu -16 296 1 246 402 60 21 chr15 40242136 40242370 -61138151 + L2 LINE L2 2815 3057 -215 1799 159 14 0 chr15 40242528 40242823 -61137698 + AluJo SINE Alu 1 299 -13 721 203 10 45 chr15 40242835 40243110 -61137411 + L1MD2 LINE L1 6034 6349 -10 1625 180 20 27 chr15 40243110 40243404 -61137117 + AluJb SINE Alu 1 292 -20 2112 113 3 0 chr15 40243424 40243715 -61136806 + AluSx SINE Alu 1 292 -20 181 87 22 43 chr15 40244804 40244850 -61135671 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr15 40245767 40245795 -61134726 + AT_rich Low_complexity Low_complexity 1 28 0 1286 69 6 0 chr15 40246358 40246518 -61134003 - L1PA12 LINE L1 0 6168 6008 2409 88 0 7 chr15 40247320 40247627 -61132894 + AluSg SINE Alu 1 305 -5 21 0 0 0 chr15 40247982 40248003 -61132518 + AT_rich Low_complexity Low_complexity 1 21 0 1272 189 7 33 chr15 40248009 40248310 -61132211 + AluJo SINE Alu 1 293 -19 1624 178 0 14 chr15 40249447 40249722 -61130799 + AluJo SINE Alu 11 281 -31 2430 37 0 37 chr15 40249722 40250015 -61130506 - AluY SINE Alu -12 299 17 198 0 0 0 chr15 40250030 40250052 -61130469 + (A)n Simple_repeat Simple_repeat 1 22 0 2339 95 3 3 chr15 40250052 40250356 -61130165 + AluSp SINE Alu 1 304 -9 1039 191 10 21 chr15 40250377 40250571 -61129950 + AluJb SINE Alu 112 303 -9 1930 148 0 19 chr15 40250820 40251138 -61129383 - AluSx SINE Alu 0 312 1 28 91 0 0 chr15 40251901 40251978 -61128543 + AT_rich Low_complexity Low_complexity 1 77 0 2181 117 0 10 chr15 40252096 40252395 -61128126 + AluSx SINE Alu 1 296 -16 21 57 0 0 chr15 40252426 40252461 -61128060 + AT_rich Low_complexity Low_complexity 1 35 0 2351 75 3 0 chr15 40252758 40253053 -61127468 - AluY SINE Alu -15 296 1 2411 78 3 0 chr15 40253540 40253836 -61126685 - AluY SINE Alu -14 297 1 25 0 0 0 chr15 40254221 40254246 -61126275 + AT_rich Low_complexity Low_complexity 1 25 0 1029 236 82 0 chr15 40254282 40254515 -61126006 + MER58 DNA MER1_type 2 253 -2167 1145 131 98 95 chr15 40254515 40254571 -61125950 + L1MD3 LINE L1 7690 7744 -251 1973 125 3 22 chr15 40254571 40254882 -61125639 + AluSg SINE Alu 1 305 -5 1145 131 98 95 chr15 40254882 40255130 -61125391 + L1MD3 LINE L1 7744 7995 0 22 0 0 0 chr15 40255183 40255205 -61125316 + AT_rich Low_complexity Low_complexity 1 22 0 242 325 0 13 chr15 40255555 40255632 -61124889 + MIR SINE MIR 28 103 -159 2380 99 0 0 chr15 40255632 40255934 -61124587 - AluSg SINE Alu -8 302 1 2164 96 7 3 chr15 40255947 40256238 -61124283 - AluY SINE Alu -19 292 1 270 287 11 11 chr15 40256421 40256508 -61124013 - AluY SINE Alu -201 100 14 2508 72 0 0 chr15 40256736 40257042 -61123479 + AluY SINE Alu 1 306 -5 180 0 0 0 chr15 40259436 40259456 -61121065 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2045 123 3 10 chr15 40259456 40259739 -61120782 - AluSx SINE Alu -29 283 1 1629 162 46 39 chr15 40259750 40259909 -61120612 - AluJb SINE Alu -26 286 123 1935 175 0 6 chr15 40259909 40260223 -61120298 - AluJb SINE Alu 0 312 1 1629 162 46 39 chr15 40260223 40260347 -61120174 - AluJb SINE Alu -189 123 1 1402 193 58 0 chr15 40260384 40260659 -61119862 - AluJo SINE Alu -21 291 1 1125 210 16 0 chr15 40260665 40260851 -61119670 + MER5A DNA MER1_type 1 189 0 2486 88 0 0 chr15 40261174 40261480 -61119041 - AluY SINE Alu -4 307 2 2298 79 7 13 chr15 40261793 40262097 -61118424 - AluSg1 SINE Alu -7 302 1 1898 146 3 37 chr15 40262345 40262668 -61117853 - AluJo SINE Alu 0 312 1 236 239 0 45 chr15 40262860 40262927 -61117594 + L2 LINE L2 3201 3264 -8 615 255 193 9 chr15 40262941 40263153 -61117368 + MIR SINE MIR 12 262 0 2007 104 54 0 chr15 40263153 40263433 -61117088 + AluSq SINE Alu 1 295 -18 2294 109 7 0 chr15 40263645 40263948 -61116573 + AluSx SINE Alu 1 305 -7 1857 144 3 30 chr15 40264070 40264375 -61116146 + AluJb SINE Alu 1 297 -15 240 111 0 0 chr15 40264377 40264413 -61116108 + (TA)n Simple_repeat Simple_repeat 1 36 0 899 214 0 0 chr15 40264681 40264849 -61115672 - FRAM SINE Alu -1 175 8 24 0 0 0 chr15 40264858 40264882 -61115639 + AT_rich Low_complexity Low_complexity 1 24 0 2191 61 0 103 chr15 40264882 40265212 -61115309 - AluY SINE Alu -15 296 1 1292 98 0 0 chr15 40265214 40265378 -61115143 - AluSq SINE Alu -16 297 134 1988 85 53 11 chr15 40265378 40265661 -61114860 - AluY SINE Alu -16 295 1 191 62 62 0 chr15 40265934 40265966 -61114555 + T-rich Low_complexity Low_complexity 3 36 0 216 0 0 0 chr15 40266000 40266024 -61114497 + (TG)n Simple_repeat Simple_repeat 1 24 0 2165 104 0 4 chr15 40266024 40266304 -61114217 - AluSx SINE Alu -33 279 1 617 250 17 40 chr15 40266368 40266544 -61113977 - MER5B DNA MER1_type 0 178 7 1046 217 9 24 chr15 40266572 40266784 -61113737 - MER3 DNA MER1_type 0 209 1 21 36 0 0 chr15 40266917 40266945 -61113576 + AT_rich Low_complexity Low_complexity 1 28 0 1716 173 25 3 chr15 40266949 40267233 -61113288 + AluJo SINE Alu 1 290 -22 198 0 0 0 chr15 40267233 40267255 -61113266 + (GA)n Simple_repeat Simple_repeat 2 23 0 8656 181 66 15 chr15 40267255 40268866 -61111655 + L1MA3 LINE L1 17 1710 -5855 1042 168 0 0 chr15 40268866 40269021 -61111500 + AluJb SINE Alu 147 301 -11 15462 154 21 57 chr15 40269021 40269079 -61111442 + L1MA3 LINE L1 3627 3686 -4038 2525 60 3 0 chr15 40269079 40269378 -61111143 + AluSp SINE Alu 1 300 -13 15462 154 21 57 chr15 40269378 40271396 -61109125 + L1MA3 LINE L1 3686 5775 -1949 2466 76 0 3 chr15 40271396 40271700 -61108821 + AluY SINE Alu 1 303 -8 15462 154 21 57 chr15 40271700 40272731 -61107790 + L1MA3 LINE L1 5775 6540 -1184 2282 105 20 0 chr15 40272731 40273036 -61107485 + AluSq SINE Alu 1 311 -2 15462 154 21 57 chr15 40273036 40274179 -61106342 + L1MA3 LINE L1 6540 7723 -1 413 180 22 11 chr15 40274244 40274333 -61106188 + L1MC1 LINE L1 2639 2728 -3418 1768 30 0 0 chr15 40274337 40274591 -61105930 + L1PA4 LINE L1 5929 6182 0 237 259 12 0 chr15 40274625 40274706 -61105815 + L1MC1 LINE L1 2752 2833 -3313 9393 223 28 27 chr15 40276016 40276990 -61103531 + L1MC1 LINE L1 2821 3793 -2353 1653 160 32 55 chr15 40276990 40277302 -61103219 + AluJo SINE Alu 1 305 -7 9393 223 28 27 chr15 40277302 40278174 -61102347 + L1MC1 LINE L1 3793 4663 -1483 2125 130 3 0 chr15 40278174 40278475 -61102046 + AluSx SINE Alu 2 303 -9 9393 223 28 27 chr15 40278475 40278976 -61101545 + L1MC1 LINE L1 4663 5173 -973 2249 79 23 3 chr15 40278976 40279279 -61101242 + AluY SINE Alu 1 309 -2 9393 223 28 27 chr15 40279279 40279403 -61101118 + L1MC1 LINE L1 5173 5295 -851 476 85 0 0 chr15 40279408 40279722 -61100799 + AluSg1 SINE Alu 2 315 0 32539 27 3 0 chr15 40279722 40284309 -61096212 + L1PA3 LINE L1 1556 6155 0 5593 149 39 33 chr15 40284306 40284343 -61096178 + L1MC1 LINE L1 5264 5299 -1034 * 1854 141 0 40 chr15 40284343 40284647 -61095874 + AluSx SINE Alu 1 292 -20 981 207 0 0 chr15 40284652 40284816 -61095705 + FRAM SINE Alu 3 166 0 5593 149 39 33 chr15 40284816 40285346 -61095175 + L1MC1 LINE L1 5302 5850 -483 1636 194 27 13 chr15 40285346 40285645 -61094876 + AluJb SINE Alu 1 303 -9 5593 149 39 33 chr15 40285645 40286112 -61094409 + L1MC1 LINE L1 5850 6312 -21 2577 58 0 0 chr15 40286117 40286425 -61094096 + AluY SINE Alu 1 308 -3 1670 158 37 7 chr15 40286474 40286746 -61093775 + AluJo SINE Alu 14 293 -19 828 241 12 6 chr15 40286817 40286979 -61093542 + FRAM SINE Alu 1 163 -13 27 0 0 0 chr15 40287108 40287135 -61093386 + AT_rich Low_complexity Low_complexity 1 27 0 672 200 118 0 chr15 40287177 40287367 -61093154 + MER58A DNA MER1_type 42 224 0 1731 250 46 78 chr15 40287389 40287615 -61092906 - L1MEc LINE L1 -4621 2204 1972 2211 92 14 3 chr15 40287615 40287907 -61092614 + AluSc SINE Alu 1 295 -14 1731 250 46 78 chr15 40287907 40288237 -61092284 - L1MEc LINE L1 -4853 1972 1633 1521 136 0 56 chr15 40288237 40288509 -61092012 - AluSx SINE Alu 0 302 45 1731 250 46 78 chr15 40288509 40288994 -61091527 - L1MEc LINE L1 -5192 1633 1057 257 88 0 0 chr15 40289110 40289144 -61091377 - MLT2A2 LTR ERVL -7 446 413 483 27 27 14 chr15 40289145 40289219 -61091302 + (TA)n Simple_repeat Simple_repeat 1 75 0 312 137 0 0 chr15 40289286 40289337 -61091184 + (TG)n Simple_repeat Simple_repeat 2 52 0 225 207 0 17 chr15 40289338 40289396 -61091125 + L1MC4 LINE L1 6667 6723 -1319 734 181 105 59 chr15 40289406 40289644 -61090877 + L2 LINE L2 3022 3270 -43 688 101 0 0 chr15 40289644 40289733 -61090788 + AluSg SINE Alu 2 90 -220 231 105 88 53 chr15 40289743 40289800 -61090721 - L1MCa LINE L1 -4362 2064 2006 225 0 0 0 chr15 40289800 40289825 -61090696 + (CA)n Simple_repeat Simple_repeat 1 25 0 243 0 0 0 chr15 40289825 40289859 -61090662 - MLT2A1 LTR ERVL -44 400 367 236 196 0 0 chr15 40289862 40289908 -61090613 + Alu SINE Alu 252 297 -4 2789 91 22 25 chr15 40289967 40290374 -61090147 - MLT2A1 LTR ERVL -38 406 1 821 221 0 0 chr15 40290513 40290658 -61089863 + FRAM SINE Alu 1 140 -36 1285 206 8 4 chr15 40290813 40291061 -61089460 - AluJo SINE Alu -63 249 1 250 279 44 95 chr15 40291153 40291311 -61089210 - L1MEc LINE L1 -5969 856 707 331 331 26 7 chr15 40291314 40291468 -61089053 - L1MEc LINE L1 -6203 622 466 500 293 54 78 chr15 40292008 40292250 -61088271 - MIR SINE MIR -8 254 19 260 289 289 8 chr15 40292262 40292390 -61088131 - MER5B DNA MER1_type -14 164 1 1015 215 198 38 chr15 40292877 40293277 -61087244 + L2 LINE L2 2809 3272 -41 2616 24 0 0 chr15 40293277 40293568 -61086953 + AluY SINE Alu 1 291 -20 2246 118 0 0 chr15 40293575 40293880 -61086641 + AluSg SINE Alu 1 305 -5 2095 134 0 0 chr15 40293920 40294233 -61086288 + AluSx SINE Alu 1 313 0 248 146 0 0 chr15 40294427 40294468 -61086053 - MSTA LTR MaLR 0 428 388 871 154 0 0 chr15 40294468 40294585 -61085936 + FLAM_C SINE Alu 1 117 -16 2355 103 92 8 chr15 40294613 40294983 -61085538 - MSTA LTR MaLR -27 401 1 2106 112 0 11 chr15 40295106 40295420 -61085101 - AluSg SINE Alu 0 311 1 1605 171 20 30 chr15 40295596 40295895 -61084626 + AluJo SINE Alu 1 296 -16 2271 67 14 3 chr15 40296056 40296362 -61084159 + AluSp SINE Alu 1 309 0 1350 189 102 4 chr15 40296381 40296645 -61083876 - AluJo SINE Alu -18 294 5 23 0 0 0 chr15 40296874 40296897 -61083624 + AT_rich Low_complexity Low_complexity 1 23 0 1816 187 3 0 chr15 40297192 40297492 -61083029 + AluJo SINE Alu 1 301 -11 1583 170 0 11 chr15 40297504 40297775 -61082746 - AluSx SINE Alu -44 268 1 344 267 131 29 chr15 40297902 40298108 -61082413 + L1ME4a LINE L1 5874 6100 -21 2193 73 0 25 chr15 40298115 40298454 -61082067 - AluY SINE Alu 0 334 3 1572 114 0 9 chr15 40298456 40298676 -61081845 - AluSq SINE Alu -11 302 85 2137 125 14 3 chr15 40298849 40299146 -61081375 - AluSg SINE Alu -10 300 1 445 252 61 0 chr15 40299149 40299264 -61081257 - L2 LINE L2 -1 3312 3191 1963 123 0 23 chr15 40299296 40299596 -61080925 + AluSx SINE Alu 1 293 -19 180 0 0 0 chr15 40299720 40299740 -61080781 + (T)n Simple_repeat Simple_repeat 1 20 0 22 56 0 0 chr15 40300853 40300889 -61079632 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr15 40301719 40301745 -61078776 + AT_rich Low_complexity Low_complexity 1 26 0 959 107 0 8 chr15 40301923 40302054 -61078467 - FLAM_C SINE Alu -3 130 1 2148 103 0 67 chr15 40302398 40302728 -61077793 - AluSx SINE Alu -4 308 1 1196 110 12 0 chr15 40302882 40303045 -61077476 + AluSg/x SINE Alu 141 305 -7 249 149 45 0 chr15 40303194 40303261 -61077260 + (TA)n Simple_repeat Simple_repeat 2 71 0 255 307 78 45 chr15 40303404 40303583 -61076938 - L1ME LINE L1 -463 5658 5474 1766 190 0 13 chr15 40303765 40304081 -61076440 - AluJo SINE Alu 0 312 1 25 0 0 0 chr15 40304179 40304204 -61076317 + AT_rich Low_complexity Low_complexity 1 25 0 4694 170 40 75 chr15 40304219 40304432 -61076089 - L1MB5 LINE L1 -28 6146 5927 2253 103 0 13 chr15 40304432 40304566 -61075955 + AluSc SINE Alu 1 135 -174 2490 58 0 3 chr15 40304566 40304861 -61075660 + AluY SINE Alu 1 294 -17 2253 103 0 13 chr15 40304861 40305026 -61075495 + AluSc SINE Alu 135 296 -13 4694 170 40 75 chr15 40305026 40305661 -61074860 - L1MB5 LINE L1 -247 5927 5271 1618 177 0 40 chr15 40305661 40305960 -61074561 - AluJo SINE Alu -25 287 1 4694 170 40 75 chr15 40305960 40306690 -61073831 - L1MB5 LINE L1 -903 5271 4517 1823 176 3 7 chr15 40306690 40306992 -61073529 + AluJo SINE Alu 1 301 -11 1955 147 0 26 chr15 40306994 40307306 -61073215 + AluJb SINE Alu 1 304 -8 4694 170 40 75 chr15 40307306 40307582 -61072939 - L1MB5 LINE L1 -1658 4516 4331 2087 133 7 0 chr15 40307582 40307883 -61072638 + AluSx SINE Alu 1 303 -9 4694 170 40 75 chr15 40307883 40307926 -61072595 - L1MB5 LINE L1 -1843 4331 4288 806 118 0 0 chr15 40308071 40308181 -61072340 - AluSg/x SINE Alu -13 297 188 1610 104 9 0 chr15 40308183 40308394 -61072127 + AluSg/x SINE Alu 87 299 -11 21 36 0 0 chr15 40308458 40308486 -61072035 + AT_rich Low_complexity Low_complexity 1 28 0 1982 140 7 0 chr15 40308495 40308787 -61071734 + AluJb SINE Alu 1 294 -18 657 204 9 9 chr15 40308798 40308911 -61071610 - FLAM_A SINE Alu -17 116 4 2419 68 0 7 chr15 40308923 40309218 -61071303 - AluY SINE Alu -18 293 1 1824 157 7 0 chr15 40309349 40309659 -61070862 + AluSx SINE Alu 1 312 0 1872 162 10 3 chr15 40309779 40310081 -61070440 - AluJb SINE Alu -8 304 1 2417 76 3 13 chr15 40310667 40310970 -61069551 - AluSp SINE Alu -13 300 1 728 193 41 7 chr15 40310970 40311115 -61069406 - MSTC LTR MaLR -215 150 1 541 252 34 68 chr15 40311278 40311334 -61069187 + L1M4 LINE L1 3182 3238 -2908 2473 63 0 10 chr15 40311334 40311635 -61068886 + AluY SINE Alu 1 298 -13 541 252 34 68 chr15 40311635 40311900 -61068621 + L1M4 LINE L1 3238 3492 -2654 1016 151 5 16 chr15 40311941 40312152 -61068369 - AluSp SINE Alu 0 311 103 2165 118 0 0 chr15 40312546 40312843 -61067678 - AluSx SINE Alu -15 297 1 2084 117 28 7 chr15 40312852 40313142 -61067379 - AluSx SINE Alu -16 296 1 866 134 17 0 chr15 40313165 40313284 -61067237 + FLAM_C SINE Alu 2 122 -11 21 0 0 0 chr15 40314062 40314083 -61066438 + AT_rich Low_complexity Low_complexity 1 21 0 1689 192 7 3 chr15 40314089 40314381 -61066140 + AluJb SINE Alu 1 293 -19 1624 178 0 14 chr15 40315518 40315793 -61064728 + AluJo SINE Alu 11 281 -31 2562 29 0 35 chr15 40315793 40316102 -61064419 - AluY SINE Alu -12 299 1 5239 64 8 7 chr15 40316102 40316819 -61063702 - L1P LINE L1 -2402 3744 3027 2173 132 7 0 chr15 40316819 40317129 -61063392 - AluJb SINE Alu 0 312 1 2364 125 115 14 chr15 40317130 40317546 -61062975 - Tigger1 DNA MER2_type -1353 1065 608 1993 121 0 7 chr15 40317584 40317866 -61062655 - AluSx SINE Alu -32 280 1 290 350 25 45 chr15 40318461 40318618 -61061903 + L2 LINE L2 3158 3311 -2 27 49 0 0 chr15 40318893 40318934 -61061587 + AT_rich Low_complexity Low_complexity 1 41 0 2361 52 7 3 chr15 40319198 40319487 -61061034 + AluY SINE Alu 1 290 -21 198 294 69 29 chr15 40319857 40319959 -61060562 + MIR SINE MIR 19 124 -84 2325 92 3 0 chr15 40320054 40320360 -61060161 - AluSc SINE Alu -2 307 1 202 93 0 70 chr15 40320630 40320673 -61059848 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 217 313 188 0 chr15 40320814 40320926 -61059595 - L3 LINE CR1 -80 1497 1365 1166 160 11 5 chr15 40321162 40321349 -61059172 - Tigger2a DNA MER2_type -1 443 256 1353 176 0 98 chr15 40321351 40321647 -61058874 - AluJo SINE Alu -22 290 24 1475 114 84 4 chr15 40321657 40321894 -61058627 - Tigger2a DNA MER2_type -176 258 3 1179 205 64 8 chr15 40321932 40322181 -61058340 - AluJb SINE Alu -49 263 1 1948 189 9 46 chr15 40322285 40322635 -61057886 - MER1B DNA MER1_type 0 337 1 1958 146 13 0 chr15 40322654 40322955 -61057566 - AluSx SINE Alu -7 305 1 180 0 0 0 chr15 40323092 40323112 -61057409 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 2053 117 0 4 chr15 40323112 40323393 -61057128 - AluSx SINE Alu -32 280 1 357 348 68 39 chr15 40323398 40323708 -61056813 - L3 LINE CR1 -1004 573 255 198 143 0 0 chr15 40323882 40323917 -61056604 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1195 123 0 0 chr15 40323960 40324123 -61056398 - AluSp SINE Alu -12 301 139 915 235 83 13 chr15 40324142 40324372 -61056149 - MIR SINE MIR -15 247 2 930 180 53 121 chr15 40324446 40324675 -61055846 - MLT1B LTR MaLR -65 325 125 1949 114 18 7 chr15 40324675 40324955 -61055566 - AluSx SINE Alu -29 283 1 930 180 53 121 chr15 40324955 40325064 -61055457 - MLT1B LTR MaLR -265 125 10 266 288 96 14 chr15 40325436 40325582 -61054939 + MER112 DNA MER1_type 99 256 -4 1704 104 4 4 chr15 40325662 40325892 -61054629 - AluSx SINE Alu -10 300 71 2177 105 7 7 chr15 40325892 40326186 -61054335 - AluSx SINE Alu -16 296 1 527 145 40 0 chr15 40326187 40326263 -61054258 - AluSx SINE Alu -233 80 2 1713 164 58 60 chr15 40326440 40326612 -61053909 - MER7A DNA MER2_type -2693 345 174 2153 57 43 29 chr15 40326612 40326912 -61053609 + AluY SINE Alu 1 304 0 1713 164 58 60 chr15 40326912 40327085 -61053436 - MER7A DNA MER2_type -2864 174 2 433 95 48 0 chr15 40327113 40327176 -61053345 + L1MC4a LINE L1 6672 6737 -1071 1514 246 175 33 chr15 40327183 40327517 -61053004 - L1M4 LINE L1 -1908 4238 3953 2289 114 0 3 chr15 40327517 40327825 -61052696 - AluSx SINE Alu -5 307 1 1514 246 175 33 chr15 40327825 40328526 -61051995 - L1M4 LINE L1 -2193 3953 3056 659 226 122 38 chr15 40328526 40328671 -61051850 - MER58 DNA MER1_type 0 2420 2289 2678 194 61 8 chr15 40328671 40329193 -61051328 + MER44D DNA MER2_type 1 605 0 659 226 122 38 chr15 40329193 40329347 -61051174 - MER58 DNA MER1_type -131 2289 10 618 197 226 113 chr15 40329358 40329718 -61050803 - L1M4 LINE L1 -3085 3061 2743 294 85 0 0 chr15 40329718 40329765 -61050756 - MER41A LTR ERV1 -86 468 422 2393 59 7 13 chr15 40329766 40330070 -61050451 + AluY SINE Alu 1 302 -9 618 197 226 113 chr15 40330070 40330351 -61050170 - L1M4 LINE L1 -3402 2744 2294 2096 108 27 0 chr15 40330836 40331132 -61049389 - AluSp SINE Alu -9 304 1 2794 255 76 34 chr15 40331134 40331323 -61049198 + L1M4 LINE L1 3543 3723 -2423 2290 91 7 3 chr15 40331323 40331621 -61048900 + AluSx SINE Alu 1 299 -13 2794 255 76 34 chr15 40331621 40332592 -61047929 + L1M4 LINE L1 3723 4752 -1394 594 172 0 0 chr15 40332593 40332707 -61047814 - AluSg/x SINE Alu 0 307 194 2055 112 0 4 chr15 40332707 40332975 -61047546 - AluSx SINE Alu -45 267 1 512 202 11 0 chr15 40332975 40333069 -61047452 - MER2 DNA MER2_type -247 98 4 704 150 21 144 chr15 40333080 40333267 -61047254 - MER77 LTR ERV1 -410 195 32 557 179 19 19 chr15 40333272 40333378 -61047143 - Tigger3(Golem) DNA MER2_type -6 3023 2918 2101 71 41 37 chr15 40333996 40334290 -61046231 - AluY SINE Alu -16 295 1 1057 165 39 127 chr15 40334491 40334542 -61045979 - LTR49-int LTR ERV1 -2856 3131 3077 2213 104 0 0 chr15 40334542 40334846 -61045675 + AluSc SINE Alu 1 304 0 1057 165 39 127 chr15 40334846 40335055 -61045466 - LTR49-int LTR ERV1 -2910 3077 1880 2032 129 7 10 chr15 40335055 40335349 -61045172 + AluSx SINE Alu 1 293 -19 21 36 0 0 chr15 40335349 40335377 -61045144 + AT_rich Low_complexity Low_complexity 1 28 0 636 146 0 27 chr15 40335434 40335544 -61044977 - LTR49-int LTR ERV1 -3427 2904 2798 2615 61 0 0 chr15 40336180 40336490 -61044031 + AluY SINE Alu 1 310 -1 216 0 0 0 chr15 40336491 40336515 -61044006 + (CA)n Simple_repeat Simple_repeat 1 24 0 267 367 140 21 chr15 40336542 40337022 -61043499 + L2 LINE L2 2081 2617 -697 215 350 0 0 chr15 40337013 40337073 -61043448 - L2 LINE L2 -55 3258 3199 * 868 182 110 0 chr15 40337282 40337436 -61043085 - FRAM SINE Alu -6 170 1 2299 97 0 10 chr15 40337640 40337950 -61042571 - AluSq SINE Alu -6 307 1 2265 76 59 0 chr15 40338695 40338985 -61041536 + AluSq SINE Alu 1 307 -6 183 42 0 0 chr15 40339169 40339193 -61041328 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 1787 109 8 8 chr15 40339301 40339558 -61040963 - AluSp SINE Alu -13 300 44 2390 70 27 0 chr15 40339558 40339857 -61040664 - AluY SINE Alu -3 308 1 207 69 0 0 chr15 40340080 40340109 -61040412 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 798 192 16 0 chr15 40340114 40340239 -61040282 - AluJ SINE Alu -30 282 156 1740 165 46 7 chr15 40340249 40340534 -61039987 - AluJo SINE Alu -16 296 1 28 29 0 0 chr15 40340537 40340572 -61039949 + AT_rich Low_complexity Low_complexity 1 35 0 2311 112 0 0 chr15 40340808 40341112 -61039409 - AluSq SINE Alu -9 304 1 1034 168 0 0 chr15 40341319 40341474 -61039047 - AluJ SINE Alu -157 155 1 2412 80 3 0 chr15 40342145 40342444 -61038077 - AluSp SINE Alu -13 300 1 27 0 0 0 chr15 40342529 40342556 -61037965 + AT_rich Low_complexity Low_complexity 1 27 0 211 274 0 16 chr15 40343628 40343690 -61036831 + L2 LINE L2 3173 3233 -80 322 130 0 0 chr15 40344519 40344565 -61035956 - Alu SINE Alu -8 294 249 2325 105 0 10 chr15 40344590 40344904 -61035617 - AluSx SINE Alu -1 311 1 2077 108 47 3 chr15 40345101 40345397 -61035124 + AluSx SINE Alu 1 309 -3 334 181 128 64 chr15 40345437 40345531 -61034990 + MIR3 SINE MIR 97 196 -12 226 143 54 0 chr15 40346010 40346066 -61034455 + (TA)n Simple_repeat Simple_repeat 2 60 0 412 123 59 6 chr15 40346089 40346259 -61034262 + (TA)n Simple_repeat Simple_repeat 2 180 0 1782 147 0 33 chr15 40346259 40346558 -61033963 - AluJb SINE Alu -23 289 1 900 147 8 0 chr15 40346600 40346729 -61033792 - FLAM_C SINE Alu -1 132 3 2039 119 51 0 chr15 40346739 40347032 -61033489 - AluSg SINE Alu -2 308 1 1846 86 67 11 chr15 40347680 40347970 -61032551 + AluY SINE Alu 1 305 0 2405 60 0 23 chr15 40347979 40348278 -61032243 + AluY SINE Alu 1 292 -19 2185 98 3 16 chr15 40348289 40348606 -61031915 + AluSq SINE Alu 1 313 0 2309 79 0 30 chr15 40348611 40348916 -61031605 + AluSg SINE Alu 2 297 -13 2192 50 36 11 chr15 40349140 40349419 -61031102 + AluY SINE Alu 1 286 -25 1803 155 7 29 chr15 40349598 40349907 -61030614 + AluJb SINE Alu 1 302 -10 2142 140 0 0 chr15 40349997 40350305 -61030216 - AluJb SINE Alu -4 308 1 2005 125 38 0 chr15 40350544 40350832 -61029689 + AluSg SINE Alu 2 300 -10 1490 165 4 4 chr15 40350912 40351182 -61029339 + AluJb SINE Alu 45 314 0 304 192 283 8 chr15 40351487 40351607 -61028914 + L1ME4a LINE L1 5969 6121 0 2241 112 0 0 chr15 40351704 40352000 -61028521 + AluSx SINE Alu 1 296 -16 2155 98 0 76 chr15 40352791 40353119 -61027402 - AluSq SINE Alu -10 303 1 25 0 0 0 chr15 40353412 40353437 -61027084 + AT_rich Low_complexity Low_complexity 1 25 0 2364 92 3 0 chr15 40354865 40355157 -61025364 - AluSx SINE Alu -19 293 1 689 218 75 32 chr15 40355203 40355391 -61025130 - L2 LINE L2 -5 3308 3113 2210 95 7 0 chr15 40355397 40355682 -61024839 + AluSg SINE Alu 1 287 -23 222 293 122 67 chr15 40355752 40355916 -61024605 - L2 LINE L2 -433 2881 2709 2408 59 0 7 chr15 40356060 40356348 -61024173 + AluSg SINE Alu 4 289 -21 2018 135 60 30 chr15 40356371 40356735 -61023786 - THE1C LTR MaLR 0 375 1 2257 56 19 0 chr15 40356895 40357194 -61023327 - AluSc SINE Alu 0 308 5 272 310 112 73 chr15 40357228 40357531 -61022990 - MLT1K LTR MaLR -22 566 252 1696 184 3 30 chr15 40357532 40357831 -61022690 + AluJb SINE Alu 1 291 -21 449 319 144 24 chr15 40357850 40358226 -61022295 + L1MEc LINE L1 35 455 -5941 2137 101 13 13 chr15 40358380 40358678 -61021843 + AluSx SINE Alu 1 298 -14 897 222 90 72 chr15 40358934 40359126 -61021395 + L1MEc LINE L1 666 853 -5422 2632 58 0 0 chr15 40359126 40359434 -61021087 - AluY SINE Alu -3 308 1 1833 140 7 18 chr15 40359436 40359721 -61020800 - AluSx SINE Alu -30 282 1 897 222 90 72 chr15 40359721 40359975 -61020546 + L1MEc LINE L1 853 1165 -5110 714 278 70 41 chr15 40360098 40360299 -61020222 - L2 LINE L2 -7 3306 3112 2156 79 18 7 chr15 40360299 40360600 -61019921 + AluSg SINE Alu 1 304 0 2157 114 7 0 chr15 40360602 40360910 -61019611 + AluSx SINE Alu 1 310 -2 714 278 70 41 chr15 40360910 40360974 -61019547 - L2 LINE L2 -201 3112 3029 382 127 273 67 chr15 40361006 40361067 -61019454 - Charlie5 DNA MER1_type -1 2584 2537 2516 54 0 3 chr15 40361067 40361364 -61019157 - AluY SINE Alu -15 296 1 382 127 273 67 chr15 40361364 40361452 -61019069 - Charlie5 DNA MER1_type -48 2537 2404 2036 106 32 0 chr15 40361452 40361736 -61018785 - AluSg SINE Alu -17 293 1 246 139 0 0 chr15 40361738 40361774 -61018747 + Alu SINE Alu 210 245 -58 1346 140 0 35 chr15 40361774 40362002 -61018519 + AluSg/x SINE Alu 83 302 -8 678 257 250 0 chr15 40362002 40362306 -61018215 - L2 LINE L2 -625 2689 2310 2334 92 0 3 chr15 40362539 40362842 -61017679 - AluSg SINE Alu -8 302 1 2184 123 3 0 chr15 40362846 40363147 -61017374 - AluSx SINE Alu -10 302 1 893 148 0 63 chr15 40363228 40363370 -61017151 + FLAM_A SINE Alu 1 133 0 601 168 35 18 chr15 40363854 40363967 -61016554 - FLAM_C SINE Alu -15 128 14 272 217 63 137 chr15 40364033 40364208 -61016313 + MIR SINE MIR 50 211 -51 800 184 7 0 chr15 40364334 40364475 -61016046 + FRAM SINE Alu 26 167 -9 704 258 61 0 chr15 40364483 40364646 -61015875 + FRAM SINE Alu 1 173 -3 247 308 118 86 chr15 40364969 40365286 -61015235 + L2 LINE L2 2824 3157 -115 2417 45 14 3 chr15 40365286 40365578 -61014943 + AluSg SINE Alu 1 295 -15 247 308 118 86 chr15 40365578 40365643 -61014878 + L2 LINE L2 3157 3218 -54 2262 89 3 3 chr15 40368566 40368858 -61011663 + AluSg SINE Alu 1 292 -18 1376 180 86 7 chr15 40369244 40369522 -61010999 - AluJo SINE Alu -7 305 6 2287 113 0 0 chr15 40369801 40370102 -61010419 - AluSp SINE Alu -12 301 1 922 118 0 29 chr15 40370105 40370241 -61010280 - AluJo/FLAM SINE Alu -169 133 2 2016 94 7 24 chr15 40370673 40371004 -61009517 - AluSq SINE Alu 0 326 1 2141 102 0 7 chr15 40371281 40371597 -61008924 - AluSg SINE Alu 0 314 1 2154 107 0 7 chr15 40371608 40371899 -61008622 - AluSx SINE Alu -23 289 1 1877 138 3 49 chr15 40372011 40372337 -61008184 + AluJb SINE Alu 1 311 -1 236 152 0 0 chr15 40372368 40372401 -61008120 - Alu SINE Alu -266 33 1 258 105 0 0 chr15 40372427 40372465 -61008056 + (CA)n Simple_repeat Simple_repeat 2 39 0 1284 114 0 0 chr15 40372465 40372640 -61007881 - AluSg/x SINE Alu -17 295 121 476 62 0 0 chr15 40372644 40372708 -61007813 - Alu SINE Alu -8 302 239 1801 93 0 17 chr15 40372708 40372945 -61007576 + AluSg SINE Alu 62 294 -16 237 33 0 0 chr15 40373049 40373079 -61007442 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2287 105 0 0 chr15 40373097 40373391 -61007130 + AluSc SINE Alu 1 294 -15 1584 181 7 28 chr15 40373391 40373677 -61006844 - AluJb SINE Alu -31 281 1 27 49 0 0 chr15 40373809 40373850 -61006671 + AT_rich Low_complexity Low_complexity 1 41 0 2258 106 10 0 chr15 40373957 40374258 -61006263 + AluSg SINE Alu 1 304 -6 2095 115 7 0 chr15 40374271 40374567 -61005954 + AluSx SINE Alu 7 304 -8 2384 87 0 0 chr15 40374586 40374884 -61005637 - AluSx SINE Alu -14 298 1 275 204 0 0 chr15 40375230 40375284 -61005237 - L3 LINE CR1 -1 1576 1523 286 386 8 8 chr15 40375492 40375619 -61004902 - MIR3 SINE MIR -53 155 29 2379 89 24 54 chr15 40375833 40376205 -61004316 - MER46B DNA MER2_type 0 236 1 2582 60 0 0 chr15 40376960 40377260 -61003261 + AluY SINE Alu 1 300 -11 371 268 60 127 chr15 40377428 40377742 -61002779 - L2 LINE L2 -775 2539 2247 231 36 0 0 chr15 40378100 40378128 -61002393 + (TTA)n Simple_repeat Simple_repeat 2 29 0 2078 93 3 43 chr15 40378130 40378432 -61002089 - AluSg SINE Alu -15 295 6 579 178 36 23 chr15 40378457 40378647 -61001874 - MER46A DNA MER2_type 0 236 1 24 0 0 0 chr15 40378757 40378781 -61001740 + AT_rich Low_complexity Low_complexity 1 24 0 1543 256 94 27 chr15 40378838 40379162 -61001359 - L1MCc LINE L1 -2461 4480 4179 2309 112 0 0 chr15 40379162 40379474 -61001047 - AluSx SINE Alu 0 312 1 1543 256 94 27 chr15 40379474 40380787 -60999734 - L1MCc LINE L1 -2762 4179 25 2385 78 14 0 chr15 40381147 40381442 -60999079 + AluSx SINE Alu 1 299 -13 1832 166 0 3 chr15 40381672 40381967 -60998554 + AluJb SINE Alu 1 294 -18 2932 192 50 29 chr15 40382064 40382891 -60997630 - L1MB3 LINE L1 -39 6144 5336 1266 202 61 22 chr15 40382891 40383168 -60997353 - AluJo SINE Alu -24 288 1 2932 192 50 29 chr15 40383168 40383278 -60997243 - L1MB3 LINE L1 -847 5336 5230 384 71 0 0 chr15 40383278 40383334 -60997187 + (CA)n Simple_repeat Simple_repeat 1 56 0 1896 166 0 3 chr15 40383334 40383624 -60996897 - AluSx SINE Alu -23 289 1 2932 192 50 29 chr15 40383624 40383757 -60996764 - L1MB3 LINE L1 -952 5231 4912 2431 49 26 16 chr15 40383815 40384122 -60996399 - AluY SINE Alu -1 310 1 1942 151 0 20 chr15 40384163 40384468 -60996053 - AluJb SINE Alu -13 299 1 2190 115 0 3 chr15 40384611 40384915 -60995606 - AluSg SINE Alu -7 303 1 2128 104 31 0 chr15 40384915 40385202 -60995319 - AluSg SINE Alu -14 296 1 2009 127 0 7 chr15 40385324 40385635 -60994886 + AluSx SINE Alu 1 309 0 1871 99 4 0 chr15 40385733 40385976 -60994545 - AluSg SINE Alu -11 299 56 311 229 86 19 chr15 40386117 40386222 -60994299 + MIR SINE MIR 125 236 -26 1784 116 0 36 chr15 40388333 40388609 -60991912 - AluSx SINE Alu -46 266 1 2043 135 7 3 chr15 40388686 40388982 -60991539 + AluSx SINE Alu 1 297 -15 437 262 184 44 chr15 40389238 40389569 -60990952 + L1ME4a LINE L1 5471 5754 -367 2218 114 3 7 chr15 40389569 40389877 -60990644 - AluSx SINE Alu -5 307 1 437 262 184 44 chr15 40389877 40390073 -60990448 + L1ME4a LINE L1 5754 5921 -200 1729 152 6 35 chr15 40390073 40390389 -60990132 - AluJo SINE Alu -5 307 1 437 262 184 44 chr15 40390389 40390429 -60990092 + L1ME4a LINE L1 5921 6119 -2 639 244 83 23 chr15 40390569 40390786 -60989735 - L1M4b LINE L1 -5423 1436 1207 22 35 0 0 chr15 40390786 40390815 -60989706 + AT_rich Low_complexity Low_complexity 1 29 0 348 280 113 34 chr15 40390942 40391181 -60989340 + L1ME4a LINE L1 5617 5874 -247 1346 239 86 40 chr15 40391195 40392034 -60988487 - L1ME2 LINE L1 -172 5992 5122 * 1428 207 30 19 chr15 40392028 40392395 -60988126 - L1ME2 LINE L1 -1898 4248 3878 19502 48 7 7 chr15 40392409 40394819 -60985702 - L1PA5 LINE L1 -5 6149 3742 2718 23 7 3 chr15 40394819 40395129 -60985392 - AluY SINE Alu 0 311 1 19502 48 7 7 chr15 40395129 40395846 -60984675 - L1PA5 LINE L1 -2411 3743 3027 2173 132 7 0 chr15 40395846 40396156 -60984365 - AluJb SINE Alu 0 312 1 2364 125 115 14 chr15 40396157 40396573 -60983948 - Tigger1 DNA MER2_type -1353 1065 608 1993 121 0 7 chr15 40396611 40396893 -60983628 - AluSx SINE Alu -32 280 1 290 350 25 45 chr15 40397488 40397645 -60982876 + L2 LINE L2 3158 3311 -2 27 49 0 0 chr15 40397920 40397961 -60982560 + AT_rich Low_complexity Low_complexity 1 41 0 2361 52 7 3 chr15 40398225 40398514 -60982007 + AluY SINE Alu 1 290 -21 198 294 69 29 chr15 40398884 40398986 -60981535 + MIR SINE MIR 19 124 -84 2326 92 3 0 chr15 40399081 40399387 -60981134 - AluSc SINE Alu -2 307 1 202 93 0 70 chr15 40399657 40399700 -60980821 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 217 313 188 0 chr15 40399841 40399953 -60980568 - L3 LINE CR1 -80 1497 1365 1166 160 11 5 chr15 40400190 40400377 -60980144 - Tigger2a DNA MER2_type -1 443 256 1353 176 0 98 chr15 40400379 40400675 -60979846 - AluJo SINE Alu -22 290 24 1475 114 84 4 chr15 40400685 40400922 -60979599 - Tigger2a DNA MER2_type -176 258 3 1192 201 64 8 chr15 40400960 40401209 -60979312 - AluJb SINE Alu -49 263 1 1948 189 9 46 chr15 40401313 40401663 -60978858 - MER1B DNA MER1_type 0 337 1 2257 119 7 0 chr15 40401687 40401997 -60978524 - AluSx SINE Alu 0 312 1 180 0 0 0 chr15 40402134 40402154 -60978367 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 2128 114 0 0 chr15 40402154 40402434 -60978087 - AluSx SINE Alu -32 280 1 357 348 68 39 chr15 40402439 40402749 -60977772 - L3 LINE CR1 -1004 573 255 198 143 0 0 chr15 40402923 40402958 -60977563 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1195 123 0 0 chr15 40403001 40403164 -60977357 - AluSp SINE Alu -12 301 139 915 235 83 13 chr15 40403183 40403413 -60977108 - MIR SINE MIR -15 247 2 930 180 53 121 chr15 40403487 40403716 -60976805 - MLT1B LTR MaLR -65 325 125 2042 117 7 3 chr15 40403716 40403998 -60976523 - AluSx SINE Alu -29 283 1 930 180 53 121 chr15 40403998 40404107 -60976414 - MLT1B LTR MaLR -265 125 10 266 288 96 14 chr15 40404479 40404625 -60975896 + MER112 DNA MER1_type 99 256 -4 1704 104 4 4 chr15 40404705 40404935 -60975586 - AluSx SINE Alu -10 300 71 2177 105 7 7 chr15 40404935 40405229 -60975292 - AluSx SINE Alu -16 296 1 527 145 40 0 chr15 40405230 40405306 -60975215 - AluSx SINE Alu -233 80 2 1713 164 58 60 chr15 40405483 40405655 -60974866 - MER7A DNA MER2_type -2693 345 174 2159 58 43 25 chr15 40405655 40405959 -60974562 + AluY SINE Alu 1 309 0 1713 164 58 60 chr15 40405959 40406132 -60974389 - MER7A DNA MER2_type -2864 174 2 433 95 48 0 chr15 40406160 40406223 -60974298 + L1MC4a LINE L1 6672 6737 -1071 1506 246 175 33 chr15 40406230 40406564 -60973957 - L1MEc LINE L1 -1908 4307 4022 2289 114 0 3 chr15 40406564 40406872 -60973649 - AluSx SINE Alu -5 307 1 1506 246 175 33 chr15 40406872 40407573 -60972948 - L1MEc LINE L1 -2193 4022 3125 659 226 122 38 chr15 40407573 40407718 -60972803 - MER58 DNA MER1_type 0 2420 2289 2678 194 61 8 chr15 40407718 40408240 -60972281 + MER44D DNA MER2_type 1 605 0 659 226 122 38 chr15 40408240 40408394 -60972127 - MER58 DNA MER1_type -131 2289 10 684 200 222 106 chr15 40408405 40408765 -60971756 - L1MEc LINE L1 -3085 3130 2813 333 104 0 75 chr15 40408765 40408813 -60971708 - MER41A LTR ERV1 -86 468 425 2622 49 0 3 chr15 40408813 40409118 -60971403 + AluY SINE Alu 1 304 -7 333 104 0 75 chr15 40409118 40409136 -60971385 - MER41A LTR ERV1 -129 425 407 684 200 222 106 chr15 40409136 40409439 -60971082 - L1MEc LINE L1 -3402 2813 2316 2100 137 0 0 chr15 40409446 40409745 -60970776 - AluSx SINE Alu -13 299 1 451 236 39 44 chr15 40409748 40409930 -60970591 - L1MEc LINE L1 -4113 2283 2103 513 213 242 42 chr15 40410051 40410291 -60970230 - L1ME1 LINE L1 -190 5976 5689 388 94 0 62 chr15 40410343 40410407 -60970114 - L1MB7 LINE L1 -9 6175 6116 699 217 160 28 chr15 40410429 40410641 -60969880 - L1MA10 LINE L1 -29 6305 6066 3475 137 75 125 chr15 40410649 40410909 -60969612 - L1MB8 LINE L1 -42 6136 5865 226 133 0 22 chr15 40410909 40410954 -60969567 + MER4E LTR ERV1 663 706 -73 3475 137 75 125 chr15 40410954 40411554 -60968967 - L1MB8 LINE L1 -313 5865 5237 1536 143 4 66 chr15 40411554 40411676 -60968845 - AluJb SINE Alu -69 243 144 1754 159 21 3 chr15 40411676 40411959 -60968562 - AluSx SINE Alu -24 288 1 1536 143 4 66 chr15 40411959 40412095 -60968426 - AluJb SINE Alu -168 144 1 3475 137 75 125 chr15 40412095 40412298 -60968223 - L1MB8 LINE L1 -941 5237 5053 2492 64 0 0 chr15 40412298 40412593 -60967928 - AluY SINE Alu -16 295 1 3475 137 75 125 chr15 40412593 40412746 -60967775 - L1MB8 LINE L1 -1125 5053 4894 473 224 133 6 chr15 40412744 40412909 -60967612 - L1ME1 LINE L1 -559 5603 5418 * 1092 191 44 0 chr15 40412914 40413118 -60967403 - AluJb SINE Alu -91 221 9 3506 230 106 50 chr15 40413119 40413191 -60967330 - Charlie1 DNA MER1_type -1102 1659 1592 1784 124 6 81 chr15 40413191 40413513 -60967008 + AluSx SINE Alu 1 298 -14 3506 230 106 50 chr15 40413513 40413572 -60966949 - Charlie1 DNA MER1_type -1169 1592 1538 2171 106 35 0 chr15 40413572 40413856 -60966665 + AluSx SINE Alu 1 294 -18 3506 230 106 50 chr15 40413856 40413979 -60966542 - Charlie1 DNA MER1_type -1223 1538 1423 194 0 39 0 chr15 40413979 40414005 -60966516 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 3506 230 106 50 chr15 40414005 40414355 -60966166 - Charlie1 DNA MER1_type -1338 1423 1094 2457 84 0 0 chr15 40414355 40414653 -60965868 + AluSx SINE Alu 1 298 -14 3506 230 106 50 chr15 40414653 40415070 -60965451 - Charlie1 DNA MER1_type -1667 1094 701 2298 65 10 7 chr15 40415070 40415364 -60965157 - AluY SINE Alu -16 295 1 3506 230 106 50 chr15 40415364 40415514 -60965007 - Charlie1 DNA MER1_type -2060 701 561 1333 196 134 0 chr15 40415514 40415820 -60964701 + MER7A DNA MER2_type 1 345 -1 3506 230 106 50 chr15 40415820 40415931 -60964590 - Charlie1 DNA MER1_type -2200 561 301 1642 189 0 17 chr15 40415940 40416236 -60964285 + AluJo SINE Alu 1 291 -21 1734 144 20 37 chr15 40416249 40416548 -60963973 + AluJo SINE Alu 1 294 -18 2365 88 0 3 chr15 40416554 40416850 -60963671 + AluSp SINE Alu 2 296 -17 2258 101 6 22 chr15 40417163 40417481 -60963040 + AluSq SINE Alu 1 313 0 227 233 33 17 chr15 40417528 40417588 -60962933 - L1M4c LINE L1 -4731 1653 1593 1744 107 96 21 chr15 40417702 40417983 -60962538 + AluSx SINE Alu 5 306 -6 180 97 0 0 chr15 40418058 40418089 -60962432 + (A)n Simple_repeat Simple_repeat 1 31 0 676 256 0 0 chr15 40418104 40418233 -60962288 + FLAM_A SINE Alu 1 129 -13 1724 166 17 7 chr15 40418398 40418687 -60961834 - AluJo SINE Alu 0 312 21 1538 176 16 0 chr15 40419595 40419851 -60960670 + AluJo SINE Alu 47 306 -6 846 143 0 0 chr15 40420052 40420171 -60960350 + FLAM_C SINE Alu 1 119 -24 2316 107 3 0 chr15 40420571 40420871 -60959650 - AluSp SINE Alu -12 301 1 21 0 0 0 chr15 40420871 40420892 -60959629 + AT_rich Low_complexity Low_complexity 1 21 0 896 139 89 13 chr15 40421158 40421316 -60959205 - AluJo SINE Alu -25 287 118 2303 100 0 13 chr15 40421977 40422288 -60958233 + AluSg SINE Alu 1 307 -3 1463 110 0 0 chr15 40422359 40422550 -60957971 + AluSq SINE Alu 106 296 -17 2020 136 0 17 chr15 40423451 40423753 -60956768 + AluSx SINE Alu 1 297 -15 1179 199 38 0 chr15 40424045 40424256 -60956265 + MER20 DNA MER1_type 1 219 0 1895 147 57 45 chr15 40424357 40424690 -60955831 - MER1B DNA MER1_type 0 337 1 2043 123 3 19 chr15 40425757 40426065 -60954456 - AluSq SINE Alu -9 304 2 1381 191 9 57 chr15 40426170 40426485 -60954036 + AluJo SINE Alu 1 300 -12 343 309 0 0 chr15 40426553 40426637 -60953884 - L2 LINE L2 -289 2983 2900 408 116 0 105 chr15 40426795 40426832 -60953689 - MER41A LTR ERV1 -87 467 442 2193 104 27 13 chr15 40426832 40427131 -60953390 + AluSg SINE Alu 1 303 -7 408 116 0 105 chr15 40427131 40427179 -60953342 - MER41A LTR ERV1 -112 442 391 269 320 262 6 chr15 40427179 40427526 -60952995 - L2 LINE L2 -577 2737 2302 2202 79 3 27 chr15 40427529 40427848 -60952673 + AluSp SINE Alu 1 312 0 256 309 0 24 chr15 40428065 40428191 -60952330 + CT-rich Low_complexity Low_complexity 4 126 0 289 355 116 47 chr15 40428207 40429060 -60951461 - L2 LINE L2 -2104 1210 299 1897 149 24 17 chr15 40429135 40429430 -60951091 - AluJb SINE Alu -15 297 1 21 36 0 0 chr15 40429463 40429491 -60951030 + AT_rich Low_complexity Low_complexity 1 28 0 1495 189 26 23 chr15 40430765 40430878 -60949643 + AluJo SINE Alu 1 112 -200 1919 131 0 24 chr15 40430878 40431168 -60949353 - AluSx SINE Alu -29 283 1 1495 189 26 23 chr15 40431168 40431360 -60949161 + AluJo SINE Alu 112 307 -5 546 151 12 0 chr15 40431454 40431540 -60948981 + Tigger5 DNA MER2_type 2237 2323 0 183 255 196 59 chr15 40432355 40432508 -60948013 + MIR SINE MIR 79 252 -10 1852 164 3 19 chr15 40432511 40432821 -60947700 + AluJb SINE Alu 1 305 -7 1251 166 100 30 chr15 40433337 40433608 -60946913 + AluJo SINE Alu 4 293 -19 2082 119 0 19 chr15 40433627 40433939 -60946582 + AluSx SINE Alu 1 306 -6 2198 114 7 0 chr15 40433970 40434269 -60946252 - AluSp SINE Alu -12 301 1 1750 110 118 0 chr15 40434300 40434563 -60945958 + AluSg1 SINE Alu 1 294 -15 2006 138 7 3 chr15 40434653 40434951 -60945570 + AluSx SINE Alu 3 301 -11 189 200 25 0 chr15 40434970 40435010 -60945511 - L2 LINE L2 -10 3262 3222 1296 180 153 0 chr15 40435588 40435849 -60944672 + AluJb SINE Alu 1 301 -11 2393 67 0 17 chr15 40436369 40436669 -60943852 - AluY SINE Alu -16 295 1 1838 177 0 7 chr15 40436712 40437006 -60943515 + AluSx SINE Alu 1 292 -20 1504 161 77 18 chr15 40437323 40437608 -60942913 + AluJo SINE Alu 1 302 -10 1781 114 4 0 chr15 40437616 40437852 -60942669 + AluSq SINE Alu 1 237 -76 608 188 61 117 chr15 40438068 40438127 -60942394 - MER5A DNA MER1_type -3 186 125 2198 93 41 0 chr15 40438127 40438418 -60942103 + AluSq SINE Alu 2 304 -9 608 188 61 117 chr15 40438418 40438555 -60941966 - MER5A DNA MER1_type -64 125 1 331 177 32 0 chr15 40441149 40441211 -60939310 - L1MB5 LINE L1 -8 6166 6103 23 54 0 0 chr15 40441415 40441452 -60939069 + AT_rich Low_complexity Low_complexity 1 37 0 1045 221 77 0 chr15 40441460 40441668 -60938853 - MER58A DNA MER1_type 0 224 1 2143 117 0 7 chr15 40443066 40443374 -60937147 + AluSx SINE Alu 3 308 -4 1148 140 34 10 chr15 40443590 40443797 -60936724 + AluJo SINE Alu 1 212 -100 1589 176 47 3 chr15 40444148 40444444 -60936077 + AluJo SINE Alu 1 309 -3 2218 112 3 10 chr15 40444450 40444764 -60935757 + AluSx SINE Alu 1 312 0 2195 122 0 22 chr15 40445024 40445335 -60935186 - AluSx SINE Alu -8 304 1 1821 164 16 10 chr15 40445425 40445735 -60934786 - AluJb SINE Alu 0 312 1 2447 58 0 3 chr15 40445796 40446087 -60934434 - AluY SINE Alu -21 290 1 2183 110 3 19 chr15 40446087 40446404 -60934117 - AluSx SINE Alu 0 312 1 773 213 6 30 chr15 40446853 40447022 -60933499 - MIR SINE MIR 0 262 98 2011 134 0 41 chr15 40447096 40447416 -60933105 - AluJb SINE Alu -5 307 1 2117 102 14 7 chr15 40447662 40447956 -60932565 + AluSg1 SINE Alu 2 297 -12 2116 117 0 22 chr15 40448210 40448527 -60931994 - AluSx SINE Alu -2 310 1 186 40 0 0 chr15 40448676 40448685 -60931836 + (TA)n Simple_repeat Simple_repeat 2 10 -16 1786 136 79 0 chr15 40448685 40448950 -60931571 + AluSx SINE Alu 1 286 -26 186 40 0 0 chr15 40448950 40448965 -60931556 + (TA)n Simple_repeat Simple_repeat 9 26 0 2097 106 3 40 chr15 40449014 40449317 -60931204 - AluSx SINE Alu -19 293 2 21 36 0 0 chr15 40449425 40449453 -60931068 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr15 40449512 40449551 -60930970 + AT_rich Low_complexity Low_complexity 1 39 0 679 118 41 178 chr15 40450546 40450611 -60929910 + MER46A DNA MER2_type 1 73 -163 1924 153 10 0 chr15 40450611 40450918 -60929603 + AluSx SINE Alu 3 312 0 1593 174 26 46 chr15 40450928 40451233 -60929288 + AluJb SINE Alu 1 299 -13 679 118 41 178 chr15 40451233 40451325 -60929196 + MER46A DNA MER2_type 83 146 -90 1888 112 76 0 chr15 40451831 40452107 -60928414 + AluSx SINE Alu 1 297 -15 2237 96 0 3 chr15 40452204 40452495 -60928026 + AluSq SINE Alu 1 290 -23 2321 82 0 7 chr15 40454610 40454904 -60925617 + AluSp SINE Alu 1 292 -21 1969 132 57 3 chr15 40454932 40455290 -60925231 - AluSx SINE Alu 0 374 1 210 164 134 30 chr15 40455656 40455723 -60924798 - L2 LINE L2 -61 3252 3179 197 33 33 0 chr15 40455853 40455883 -60924638 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 2153 92 0 0 chr15 40455887 40456160 -60924361 - AluSg SINE Alu -37 273 1 1935 90 115 11 chr15 40456251 40456530 -60923991 + AluSg SINE Alu 1 308 -2 521 205 8 25 chr15 40457706 40457828 -60922693 + MIR SINE MIR 23 142 -66 24 32 0 0 chr15 40458155 40458186 -60922335 + AT_rich Low_complexity Low_complexity 1 31 0 2368 77 6 16 chr15 40458780 40459093 -60921428 - AluSp SINE Alu 0 313 4 2070 119 10 10 chr15 40459163 40459473 -60921048 - AluSx SINE Alu -2 310 1 626 191 0 19 chr15 40460565 40460670 -60919851 + FLAM_A SINE Alu 18 120 -22 2832 7 0 3 chr15 40460680 40460988 -60919533 + AluY SINE Alu 1 307 -4 180 0 0 0 chr15 40460989 40461009 -60919512 + (ATG)n Simple_repeat Simple_repeat 2 21 0 1785 188 0 0 chr15 40461070 40461358 -60919163 - AluJb SINE Alu -24 288 1 2361 104 0 0 chr15 40461495 40461804 -60918717 + AluSx SINE Alu 1 309 -3 2164 124 0 0 chr15 40462021 40462320 -60918201 - AluSx SINE Alu -12 300 2 1401 181 32 8 chr15 40462321 40462413 -60918108 + AluJo SINE Alu 25 113 -199 522 0 0 0 chr15 40462413 40462471 -60918050 + (CATA)n Simple_repeat Simple_repeat 3 60 0 1401 181 32 8 chr15 40462471 40462626 -60917895 + AluJo SINE Alu 113 278 -34 210 71 0 0 chr15 40462626 40462654 -60917867 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 1834 126 0 15 chr15 40462678 40462948 -60917573 + AluSx SINE Alu 39 304 -8 21 0 0 0 chr15 40465037 40465058 -60915463 + AT_rich Low_complexity Low_complexity 1 21 0 422 254 69 40 chr15 40467243 40467364 -60913157 - MER5B DNA MER1_type 0 178 49 248 70 23 0 chr15 40467364 40467407 -60913114 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 422 254 69 40 chr15 40467407 40467458 -60913063 - MER5B DNA MER1_type -129 49 1 22 80 0 0 chr15 40467721 40467771 -60912750 + AT_rich Low_complexity Low_complexity 1 50 0 273 221 183 29 chr15 40467943 40468047 -60912474 + MIR SINE MIR 72 191 -71 201 250 0 0 chr15 40468494 40468530 -60911991 - MIR SINE MIR -138 70 35 187 315 41 55 chr15 40468911 40468984 -60911537 + MIR SINE MIR 8 79 -183 2051 118 20 3 chr15 40469270 40469566 -60910955 + AluSx SINE Alu 1 301 -11 237 300 20 40 chr15 40469566 40469666 -60910855 - L2 LINE L2 -32 3281 3184 25 90 0 0 chr15 40470127 40470194 -60910327 + AT_rich Low_complexity Low_complexity 1 67 0 2013 122 0 14 chr15 40470194 40470482 -60910039 - AluSx SINE Alu -28 284 1 2354 57 43 7 chr15 40470693 40470993 -60909528 + AluY SINE Alu 1 311 0 1862 130 39 3 chr15 40470999 40471283 -60909238 + AluSq SINE Alu 1 294 -19 987 114 0 0 chr15 40471347 40471479 -60909042 - AluSx SINE Alu -15 295 164 538 152 0 0 chr15 40471481 40471560 -60908961 - AluSx SINE Alu -233 80 2 1791 159 21 0 chr15 40471571 40471854 -60908667 - AluJb SINE Alu -23 289 1 194 125 31 0 chr15 40471904 40471936 -60908585 + MIR SINE MIR 116 148 -114 2106 109 3 10 chr15 40471993 40472296 -60908225 - AluSx SINE Alu -10 302 2 2119 111 47 0 chr15 40472486 40472784 -60907737 - AluSx SINE Alu 0 312 1 2072 102 17 10 chr15 40472784 40473079 -60907442 - AluSq SINE Alu -15 298 2 1778 140 43 0 chr15 40473080 40473358 -60907163 - AluSx SINE Alu -9 303 14 2203 135 81 33 chr15 40473485 40473878 -60906643 - MLT2D LTR ERVL 0 414 3 244 320 147 0 chr15 40473996 40474071 -60906450 - L2 LINE L2 -36 3236 3151 1409 130 119 47 chr15 40474111 40474388 -60906133 - AluJo SINE Alu -15 297 1 2257 79 10 10 chr15 40474579 40474884 -60905637 - AluSx SINE Alu -7 305 1 181 185 31 15 chr15 40475938 40476003 -60904518 + C-rich Low_complexity Low_complexity 6 71 0 207 0 0 0 chr15 40476220 40476243 -60904278 + (CGG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr15 40476283 40476306 -60904215 + GC_rich Low_complexity Low_complexity 1 23 0 2392 93 3 0 chr15 40478047 40478349 -60902172 - AluSq SINE Alu -10 303 1 2339 63 25 0 chr15 40478438 40478723 -60901798 - AluY SINE Alu -19 292 1 210 71 0 0 chr15 40478746 40478774 -60901747 + (T)n Simple_repeat Simple_repeat 1 28 0 1635 157 24 41 chr15 40478803 40478959 -60901562 - AluJb SINE Alu -24 288 131 2506 73 0 0 chr15 40478959 40479259 -60901262 - AluSg1 SINE Alu -8 301 2 297 0 0 0 chr15 40479259 40479292 -60901229 + (TA)n Simple_repeat Simple_repeat 2 34 0 1635 157 24 41 chr15 40479292 40479427 -60901094 - AluJb SINE Alu -179 133 1 1020 166 109 116 chr15 40479462 40479764 -60900757 - AluSq SINE Alu -3 300 1 504 130 0 0 chr15 40480461 40480530 -60899991 + FLAM_A SINE Alu 42 110 -32 280 240 40 10 chr15 40480819 40480919 -60899602 - L1MC5 LINE L1 -118 7843 7741 2454 71 7 0 chr15 40482441 40482735 -60897786 - AluSc SINE Alu -13 296 1 276 130 0 0 chr15 40483092 40483138 -60897383 + (T)n Simple_repeat Simple_repeat 1 46 0 2207 85 7 4 chr15 40483239 40483520 -60897001 + AluSp SINE Alu 22 303 -10 2259 94 0 0 chr15 40483536 40483812 -60896709 + AluSc SINE Alu 18 293 -16 23 54 0 0 chr15 40483992 40484029 -60896492 + AT_rich Low_complexity Low_complexity 1 37 0 1229 131 131 0 chr15 40484376 40484612 -60895909 - L1MA6 LINE L1 -5 6295 6029 331 230 23 0 chr15 40484684 40484771 -60895750 + MIR SINE MIR 112 200 -62 1885 123 18 7 chr15 40485612 40485897 -60894624 - AluSx SINE Alu -2 310 23 2289 82 4 0 chr15 40485946 40486225 -60894296 - AluSp SINE Alu -20 293 14 2319 91 7 13 chr15 40486233 40486542 -60893979 - AluSg SINE Alu -3 307 1 480 251 79 89 chr15 40486780 40486935 -60893586 + L1M4 LINE L1 4615 4770 -1376 2206 105 24 0 chr15 40486935 40487231 -60893290 + AluSq SINE Alu 1 303 -10 480 251 79 89 chr15 40487231 40487340 -60893181 + L1M4 LINE L1 4770 4879 -1267 1313 191 146 17 chr15 40487340 40487690 -60892831 - MSTD LTR MaLR 0 396 2 480 251 79 89 chr15 40487690 40487907 -60892614 + L1M4 LINE L1 4879 5092 -1054 2069 117 11 0 chr15 40487907 40488226 -60892295 + AluSp SINE Alu 1 322 0 2322 99 10 0 chr15 40488283 40488585 -60891936 + AluSg SINE Alu 1 305 -5 1294 106 62 0 chr15 40488585 40488764 -60891757 + AluSp SINE Alu 109 298 -15 500 244 132 43 chr15 40488811 40489069 -60891452 + L1M4 LINE L1 4040 4320 -1826 992 160 14 80 chr15 40489081 40489294 -60891227 - AluJo SINE Alu -12 300 102 532 309 32 28 chr15 40489301 40489635 -60890886 + L1M4 LINE L1 4330 4665 -1481 267 265 0 0 chr15 40490239 40490307 -60890214 + A-rich Low_complexity Low_complexity 5 72 0 2170 99 26 3 chr15 40490614 40490916 -60889605 - AluSc SINE Alu 0 309 1 2073 147 10 0 chr15 40491041 40491340 -60889181 - AluSx SINE Alu -10 302 1 2079 131 16 3 chr15 40491349 40491655 -60888866 - AluSx SINE Alu -2 310 1 2026 157 0 0 chr15 40491705 40492005 -60888516 + AluJo SINE Alu 7 306 -6 2462 63 3 3 chr15 40492006 40492306 -60888215 + AluY SINE Alu 1 300 -11 679 238 76 24 chr15 40492463 40492732 -60887789 - L1ME LINE L1 -344 5777 5501 208 175 132 114 chr15 40492767 40492881 -60887640 + MIR SINE MIR 39 154 -108 2226 134 0 0 chr15 40492890 40493196 -60887325 + AluSx SINE Alu 1 306 -6 1746 137 13 37 chr15 40494661 40494961 -60885560 - AluJb SINE Alu -19 293 1 1662 163 0 64 chr15 40495144 40495304 -60885217 - AluJo SINE Alu -19 293 161 2144 116 0 16 chr15 40495304 40495607 -60884914 - AluSx SINE Alu -14 298 1 1662 163 0 64 chr15 40495607 40495759 -60884762 - AluJo SINE Alu -151 161 1 1084 182 126 70 chr15 40495764 40496176 -60884345 - Charlie4a DNA MER1_type -73 435 1 481 160 160 0 chr15 40497018 40497118 -60883403 - AluSc SINE Alu -8 301 186 896 94 0 8 chr15 40497122 40497334 -60883187 + AluY SINE Alu 6 291 -20 1590 80 5 5 chr15 40497334 40497535 -60882986 - AluSq SINE Alu -112 201 1 2146 113 3 42 chr15 40497912 40498222 -60882299 + AluSx SINE Alu 1 298 -14 2466 61 10 0 chr15 40498224 40498517 -60882004 + AluY SINE Alu 1 296 -15 859 141 0 0 chr15 40498718 40498846 -60881675 - FLAM_C SINE Alu -5 128 1 317 343 119 0 chr15 40499324 40499467 -60881054 + MIR SINE MIR 33 192 -70 1792 164 10 0 chr15 40502134 40502433 -60878088 - AluSx SINE Alu -10 302 1 563 200 173 27 chr15 40502433 40502583 -60877938 - FAM SINE Alu 0 175 4 2153 114 7 3 chr15 40502789 40503088 -60877433 - AluSx SINE Alu -12 300 1 680 161 16 32 chr15 40503707 40503831 -60876690 - FLAM_A SINE Alu -11 122 1 1913 166 70 0 chr15 40504076 40504389 -60876132 - MER1B DNA MER1_type 0 339 5 1956 135 3 17 chr15 40505502 40505798 -60874723 - AluSx SINE Alu -20 292 1 2319 91 3 3 chr15 40505865 40506163 -60874358 + AluSg SINE Alu 1 298 -12 614 238 220 40 chr15 40506540 40506952 -60873569 + L1ME4a LINE L1 5506 5999 -122 276 188 43 0 chr15 40506985 40507054 -60873467 + L1ME4a LINE L1 6048 6119 -2 2328 85 30 3 chr15 40507685 40507990 -60872531 + AluSp SINE Alu 1 313 0 2280 92 31 0 chr15 40508511 40508803 -60871718 - AluSx SINE Alu -11 301 1 246 235 103 0 chr15 40510175 40510243 -60870278 + L2 LINE L2 3189 3263 -9 2505 78 0 0 chr15 40510283 40510592 -60869929 - AluY SINE Alu -2 309 1 1560 183 14 21 chr15 40510597 40510886 -60869635 - AluJo SINE Alu -21 291 5 329 218 120 30 chr15 40510912 40511045 -60869476 + L1ME4a LINE L1 5789 5933 -188 232 246 35 0 chr15 40511104 40511161 -60869360 + MIR SINE MIR 26 84 -178 2429 78 3 0 chr15 40511773 40512080 -60868441 - AluY SINE Alu -3 308 1 2081 132 0 0 chr15 40512818 40513099 -60867422 - AluSp SINE Alu -32 281 1 2127 138 0 0 chr15 40514289 40514586 -60865935 - AluSx SINE Alu -11 301 5 2582 72 3 0 chr15 40514656 40514963 -60865558 + AluSp SINE Alu 1 308 -5 318 263 56 26 chr15 40515030 40515162 -60865359 + L1MC/D LINE L1 5693 5830 -331 2493 70 0 3 chr15 40515162 40515463 -60865058 + AluY SINE Alu 1 300 -11 2190 116 0 3 chr15 40515629 40515923 -60864598 - AluSx SINE Alu -19 293 1 28 0 0 0 chr15 40515980 40516008 -60864513 + AT_rich Low_complexity Low_complexity 1 28 0 2030 164 0 0 chr15 40516016 40516326 -60864195 + AluJb SINE Alu 1 310 -2 180 0 0 0 chr15 40516340 40516360 -60864161 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 257 221 79 64 chr15 40516402 40516542 -60863979 + L1ME LINE L1 328 469 -5927 2461 52 10 32 chr15 40516816 40517126 -60863395 - AluY SINE Alu -8 303 1 2317 204 103 80 chr15 40517471 40517669 -60862852 + L1ME LINE L1 775 967 -5439 2358 106 0 6 chr15 40517669 40517981 -60862540 + AluSx SINE Alu 1 310 -2 2317 204 103 80 chr15 40517981 40518038 -60862483 + L1ME LINE L1 967 1021 -5385 2224 96 22 29 chr15 40518038 40518351 -60862170 + AluSx SINE Alu 1 311 -1 2317 204 103 80 chr15 40518351 40518567 -60861954 + L1ME LINE L1 1021 1231 -5175 3013 148 40 84 chr15 40518567 40519197 -60861324 + MER7C DNA MER2_type 1 602 0 2317 204 103 80 chr15 40519197 40519292 -60861229 + L1ME LINE L1 1231 1322 -5084 2249 90 0 45 chr15 40519292 40519604 -60860917 + AluSc SINE Alu 1 298 -11 2317 204 103 80 chr15 40519604 40520002 -60860519 + L1ME LINE L1 1322 1739 -4667 2117 140 0 0 chr15 40520002 40520302 -60860219 - AluJb SINE Alu -12 300 1 2317 204 103 80 chr15 40520302 40520388 -60860133 + L1ME LINE L1 1739 1822 -4584 444 54 0 0 chr15 40520408 40520464 -60860057 + Alu SINE Alu 2 57 -261 663 246 80 26 chr15 40520468 40520781 -60859740 + L1ME LINE L1 1995 2324 -4082 3508 222 32 31 chr15 40520784 40521061 -60859460 + L1ME LINE L1 3663 3938 -2468 2091 137 0 0 chr15 40521061 40521354 -60859167 + AluSx SINE Alu 1 293 -19 3508 222 32 31 chr15 40521354 40521992 -60858529 + L1ME LINE L1 3938 4582 -1824 2034 95 75 14 chr15 40521992 40522287 -60858234 + AluSq SINE Alu 1 313 0 3508 222 32 31 chr15 40522287 40522337 -60858184 + L1ME LINE L1 4582 4630 -1776 1932 134 7 3 chr15 40523441 40523725 -60856796 - AluJo SINE Alu -27 285 1 2315 67 9 51 chr15 40524104 40524420 -60856101 + AluY SINE Alu 1 303 -8 1538 134 9 0 chr15 40524780 40525003 -60855518 - AluSg/x SINE Alu -9 301 77 2276 95 14 7 chr15 40525160 40525456 -60855065 + AluSx SINE Alu 1 298 -14 755 153 0 29 chr15 40525847 40525984 -60854537 + FLAM_C SINE Alu 1 133 0 1876 157 10 22 chr15 40526204 40526517 -60854004 + AluSx SINE Alu 1 309 -3 22 56 0 0 chr15 40526576 40526612 -60853909 + AT_rich Low_complexity Low_complexity 1 36 0 2074 194 55 18 chr15 40527320 40527773 -60852748 + LTR22B LTR ERVK 23 492 0 2310 101 0 10 chr15 40528596 40528903 -60851618 - AluSg SINE Alu -6 304 1 645 158 16 16 chr15 40529229 40529356 -60851165 - FLAM_C SINE Alu 0 143 17 1329 156 120 36 chr15 40530487 40530627 -60849894 + AluJo SINE Alu 1 128 -184 2303 101 0 10 chr15 40530627 40530933 -60849588 + AluSx SINE Alu 4 306 -6 1329 156 120 36 chr15 40530933 40531068 -60849453 + AluJo SINE Alu 128 299 -13 1939 141 0 3 chr15 40531333 40531637 -60848884 + AluSx SINE Alu 1 303 0 1004 168 43 0 chr15 40531638 40531799 -60848722 + AluJb SINE Alu 133 300 -12 1730 158 34 14 chr15 40531992 40532284 -60848237 - AluJb SINE Alu -12 300 3 266 228 0 175 chr15 40532450 40532551 -60847970 + MIR SINE MIR 70 131 -131 1942 133 0 51 chr15 40532551 40532866 -60847655 - AluSx SINE Alu -13 299 1 266 228 0 175 chr15 40532866 40532935 -60847586 + MIR SINE MIR 131 210 -52 2468 70 0 6 chr15 40532940 40533252 -60847269 + AluSg SINE Alu 1 310 0 1372 190 6 80 chr15 40533260 40533586 -60846935 + AluJb SINE Alu 1 302 -10 2370 93 7 0 chr15 40533611 40533913 -60846608 - AluSx SINE Alu -8 304 1 270 0 0 0 chr15 40535457 40535487 -60845034 + (A)n Simple_repeat Simple_repeat 1 30 0 2376 92 7 0 chr15 40535904 40536208 -60844313 - AluSp SINE Alu -7 306 1 182 258 0 0 chr15 40536906 40536937 -60843584 - L2 LINE L2 -18 3254 3224 2262 114 0 3 chr15 40538087 40538394 -60842127 - AluSg SINE Alu -4 306 1 1194 74 27 0 chr15 40538658 40538806 -60841715 - L1PA8 LINE L1 -15 6157 6006 21 0 0 0 chr15 40538850 40538871 -60841650 + AT_rich Low_complexity Low_complexity 1 21 0 285 253 137 14 chr15 40538886 40539032 -60841489 - L1ME4a LINE L1 -2 6119 5956 869 199 50 0 chr15 40539077 40539238 -60841283 - FRAM SINE Alu -6 170 2 2276 101 7 0 chr15 40539668 40539965 -60840556 + AluSp SINE Alu 1 299 -14 257 216 20 0 chr15 40539971 40540022 -60840499 + MIR SINE MIR 56 107 -155 1873 160 0 0 chr15 40540057 40540344 -60840177 - AluJb SINE Alu -12 300 14 2009 145 0 23 chr15 40540351 40540661 -60839860 - AluSx SINE Alu -9 303 1 3861 136 20 9 chr15 40540687 40541272 -60839249 - L1 LINE L1 -1665 4481 3887 2298 98 0 13 chr15 40541272 40541578 -60838943 - AluY SINE Alu -9 302 1 3861 136 20 9 chr15 40541578 40541645 -60838876 - L1 LINE L1 -2259 3887 3822 1614 139 27 131 chr15 40541851 40542188 -60838333 - AluJo SINE Alu 0 302 1 1463 170 71 54 chr15 40542437 40542773 -60837748 + MER2 DNA MER2_type 2 343 -1 2434 76 10 19 chr15 40543443 40543757 -60836764 + AluY SINE Alu 1 311 0 256 293 17 0 chr15 40544039 40544097 -60836424 - L2 LINE L2 -7 3265 3207 354 316 128 37 chr15 40544365 40544552 -60835969 - MIR SINE MIR -57 205 2 1956 123 47 0 chr15 40546089 40546365 -60834156 - AluSx SINE Alu -23 289 1 226 265 0 0 chr15 40546469 40546518 -60834003 + Charlie4 DNA MER1_type 2 50 -1911 1449 261 97 21 chr15 40546731 40547207 -60833314 + LTR33A LTR ERVL 4 515 -8 384 292 56 50 chr15 40547508 40547669 -60832852 + MIR3 SINE MIR 9 170 -38 30 27 0 0 chr15 40547706 40547743 -60832778 + AT_rich Low_complexity Low_complexity 1 37 0 2182 61 27 24 chr15 40547932 40548225 -60832296 - AluY SINE Alu -17 294 1 1794 138 10 61 chr15 40548532 40548692 -60831829 - AluJb SINE Alu -16 296 158 2381 104 0 0 chr15 40548692 40548999 -60831522 - AluSx SINE Alu -5 307 1 1794 138 10 61 chr15 40548999 40549150 -60831371 - AluJb SINE Alu -154 158 1 2173 102 17 0 chr15 40549180 40549474 -60831047 - AluSx SINE Alu -13 299 1 225 0 0 0 chr15 40549888 40549913 -60830608 + (A)n Simple_repeat Simple_repeat 1 25 0 918 285 85 38 chr15 40550081 40550606 -60829915 + L1ME4a LINE L1 5270 5828 -293 2238 84 17 13 chr15 40550606 40550905 -60829616 - AluY SINE Alu -11 300 1 918 285 85 38 chr15 40550905 40550979 -60829542 + L1ME4a LINE L1 5828 5897 -224 330 238 25 12 chr15 40550986 40551066 -60829455 + L2 LINE L2 3232 3312 -1 302 163 0 0 chr15 40551107 40551156 -60829365 + L1ME4a LINE L1 5973 6021 -100 30 0 0 0 chr15 40551199 40551229 -60829292 + AT_rich Low_complexity Low_complexity 1 30 0 1561 156 80 8 chr15 40551229 40551492 -60829029 - AluJo SINE Alu -30 282 1 1020 181 12 0 chr15 40552693 40552859 -60827662 + FRAM SINE Alu 1 167 -9 1742 170 14 7 chr15 40553032 40553320 -60827201 - AluJb SINE Alu -22 290 1 768 211 51 11 chr15 40553417 40553592 -60826929 + MIR SINE MIR 62 243 -19 1841 148 35 0 chr15 40555004 40555294 -60825227 - AluJo SINE Alu -12 300 1 601 243 70 5 chr15 40555350 40555535 -60824986 - L1ME3A LINE L1 -222 5948 5752 470 248 15 15 chr15 40555530 40555663 -60824858 + L1M4 LINE L1 3922 4054 -2092 * 349 222 0 0 chr15 40555700 40555781 -60824740 - L1ME3A LINE L1 -2358 5427 5347 460 280 64 6 chr15 40555786 40555943 -60824578 + LTR33 LTR ERVL 1 166 -355 900 270 81 73 chr15 40556090 40556469 -60824052 - L1ME3A LINE L1 -1070 5076 4690 2205 123 0 0 chr15 40556469 40556771 -60823750 - AluSx SINE Alu -9 303 2 900 270 81 73 chr15 40556771 40556899 -60823622 - L1ME3A LINE L1 -1456 4690 4565 615 225 39 93 chr15 40556896 40557023 -60823498 - L1ME3A LINE L1 -2042 4104 3972 * 2336 65 3 32 chr15 40557023 40557332 -60823189 + AluY SINE Alu 1 300 -11 2280 81 7 10 chr15 40557332 40557628 -60822893 + AluY SINE Alu 1 295 -16 615 225 39 93 chr15 40557628 40557757 -60822764 - L1ME3A LINE L1 -2172 3974 3861 239 277 0 0 chr15 40557951 40558016 -60822505 + MIR SINE MIR 90 154 -108 433 213 0 0 chr15 40558136 40558216 -60822305 + MER116 DNA Mariner 1 80 0 2211 102 24 0 chr15 40558518 40558812 -60821709 - AluSx SINE Alu -11 301 1 22 0 0 0 chr15 40559218 40559240 -60821281 + AT_rich Low_complexity Low_complexity 1 22 0 1528 161 26 59 chr15 40559343 40559499 -60821022 - AluJo SINE Alu -17 295 152 2269 87 28 0 chr15 40559499 40559787 -60820734 - AluSx SINE Alu -16 296 1 1528 161 26 59 chr15 40559787 40559935 -60820586 - AluJo SINE Alu -160 152 1 25 0 0 0 chr15 40560119 40560144 -60820377 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr15 40560743 40560769 -60819752 + AT_rich Low_complexity Low_complexity 1 26 0 2013 132 10 3 chr15 40561749 40562045 -60818476 - AluJb SINE Alu -14 298 1 1902 138 10 22 chr15 40562546 40562857 -60817664 - AluSx SINE Alu -5 307 1 3173 143 28 52 chr15 40562897 40563002 -60817519 + L1MA9 LINE L1 5726 5832 -480 991 143 0 0 chr15 40563002 40563135 -60817386 + FLAM_C SINE Alu 1 133 0 3173 143 28 52 chr15 40563135 40563629 -60816892 + L1MA9 LINE L1 5832 6311 -1 2251 100 7 3 chr15 40563649 40563949 -60816572 + AluSp SINE Alu 1 301 -12 1385 151 82 68 chr15 40563980 40564113 -60816408 - AluJo SINE Alu -16 296 166 2367 103 108 79 chr15 40564113 40564488 -60816033 + MSTA LTR MaLR 1 391 -37 2175 97 0 3 chr15 40564488 40564776 -60815745 - AluSx SINE Alu -25 287 1 2367 103 108 79 chr15 40564776 40564816 -60815705 + MSTA LTR MaLR 391 428 0 1385 151 82 68 chr15 40564816 40564974 -60815547 - AluJo SINE Alu -146 166 1 425 362 64 34 chr15 40565627 40566054 -60814467 - L2 LINE L2 -226 3046 2601 2255 89 3 7 chr15 40566390 40566683 -60813838 - AluSg SINE Alu -16 294 3 586 279 28 11 chr15 40568406 40568585 -60811936 - MIR SINE MIR -14 248 67 2166 83 4 11 chr15 40568585 40568861 -60811660 + AluSq SINE Alu 1 274 -39 236 246 0 82 chr15 40568869 40568930 -60811591 - MIR SINE MIR -184 78 23 2077 134 3 0 chr15 40569376 40569674 -60810847 - AluSg SINE Alu -11 299 1 559 258 81 58 chr15 40569821 40570181 -60810340 + L1ME4a LINE L1 5542 5909 -212 2106 175 44 76 chr15 40570183 40570458 -60810063 - LTR54 LTR ERV1 0 510 228 910 113 0 70 chr15 40570458 40570600 -60809921 - FLAM_C SINE Alu 0 133 2 2120 151 0 0 chr15 40570600 40570905 -60809616 - AluJb SINE Alu -7 305 1 2106 175 44 76 chr15 40570905 40571155 -60809366 - LTR54 LTR ERV1 -280 230 1 1585 168 39 7 chr15 40571314 40571599 -60808922 - AluJo SINE Alu -14 298 5 1787 125 80 7 chr15 40571862 40572151 -60808370 + AluJo SINE Alu 3 312 0 280 320 116 14 chr15 40572555 40572627 -60807894 + MIR3 SINE MIR 41 104 -104 2217 136 0 0 chr15 40572627 40572935 -60807586 - AluSq SINE Alu -5 308 1 280 320 116 14 chr15 40572935 40573009 -60807512 + MIR3 SINE MIR 104 202 -6 1456 183 11 42 chr15 40573096 40573380 -60807141 - AluSx SINE Alu -37 275 1 1794 146 36 11 chr15 40573395 40573676 -60806845 - AluSx SINE Alu -24 288 1 30 45 0 0 chr15 40573682 40573726 -60806795 + AT_rich Low_complexity Low_complexity 1 44 0 2067 139 10 0 chr15 40573733 40574035 -60806486 + AluSx SINE Alu 1 305 -7 348 143 0 0 chr15 40574037 40574086 -60806435 + MER58 DNA MER1_type 2353 2401 -19 1781 113 33 97 chr15 40574093 40574422 -60806099 + AluJo SINE Alu 5 312 0 2134 150 0 0 chr15 40574431 40574737 -60805784 + AluSx SINE Alu 1 306 -6 760 259 30 0 chr15 40574759 40574925 -60805596 - MER5A DNA MER1_type -18 171 1 382 226 36 93 chr15 40575138 40575259 -60805262 + L1MC4 LINE L1 7804 7930 -112 1778 68 0 5 chr15 40575259 40575478 -60805043 + AluY SINE Alu 84 301 -10 1903 119 22 0 chr15 40575483 40575752 -60804769 + AluSx SINE Alu 38 312 0 382 226 36 93 chr15 40575752 40575872 -60804649 + L1MC4 LINE L1 7934 8037 -5 446 193 105 4 chr15 40575877 40576013 -60804508 + L1MEc LINE L1 1007 1129 -5076 1804 157 20 7 chr15 40576105 40576404 -60804117 - AluSx SINE Alu -7 305 3 552 182 10 10 chr15 40576459 40576558 -60803963 + Tigger3b DNA MER2_type 2 100 -1131 1476 132 128 4 chr15 40576559 40576825 -60803696 + Tigger3b DNA MER2_type 275 573 -658 1967 123 10 14 chr15 40576976 40577289 -60803232 + AluSx SINE Alu 1 312 0 293 235 29 0 chr15 40577420 40577488 -60803033 + L1ME3A LINE L1 6011 6080 -90 1999 141 7 0 chr15 40577510 40577801 -60802720 + AluSx SINE Alu 1 293 -19 963 249 142 75 chr15 40577882 40578049 -60802472 + L1M4 LINE L1 3839 3993 -2153 375 73 0 0 chr15 40578049 40578104 -60802417 + (CA)n Simple_repeat Simple_repeat 2 56 0 963 249 142 75 chr15 40578104 40578218 -60802303 + L1M4 LINE L1 3993 4098 -2048 1586 197 7 0 chr15 40578218 40578508 -60802013 + AluJb SINE Alu 1 292 -20 963 249 142 75 chr15 40578508 40578725 -60801796 + L1M4 LINE L1 4098 4299 -1847 2248 113 0 0 chr15 40578725 40579026 -60801495 + AluY SINE Alu 1 301 -10 963 249 142 75 chr15 40579026 40579504 -60801017 + L1M4 LINE L1 4299 4883 -1263 2075 143 3 0 chr15 40579526 40579827 -60800694 - AluSx SINE Alu -10 302 1 1553 190 10 3 chr15 40580397 40580687 -60799834 - AluJb SINE Alu -15 297 6 49 0 0 0 chr15 40581067 40581116 -60799405 + AT_rich Low_complexity Low_complexity 1 49 0 49 0 0 0 chr15 40582049 40582098 -60798423 + AT_rich Low_complexity Low_complexity 1 49 0 499 168 21 0 chr15 40582478 40582573 -60797948 + AluJ/FLAM SINE Alu 6 102 -210 1622 179 10 3 chr15 40582799 40583089 -60797432 - AluSp SINE Alu -21 292 1 7547 59 14 3 chr15 40583123 40584570 -60795951 - L1PA7 LINE L1 0 6154 4694 207 0 0 0 chr15 40584570 40584593 -60795928 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7547 59 14 3 chr15 40584593 40584699 -60795822 - L1PA7 LINE L1 -1460 4694 4591 1379 97 0 5 chr15 40584950 40585136 -60795385 - AluY SINE Alu -99 212 28 5182 92 21 7 chr15 40585142 40585894 -60794627 - L1PA7 LINE L1 -1562 4584 3822 216 370 0 28 chr15 40586578 40586686 -60793835 + MIR SINE MIR 30 134 -74 903 149 0 22 chr15 40586945 40587079 -60793442 - FLAM_A SINE Alu -2 131 1 258 160 0 0 chr15 40587356 40587406 -60793115 + GA-rich Low_complexity Low_complexity 2 51 0 1600 154 58 79 chr15 40587926 40588111 -60792410 + MER44D DNA MER2_type 17 204 -2287 1663 140 45 48 chr15 40588111 40588403 -60792118 + AluJo SINE Alu 1 291 -21 1600 154 58 79 chr15 40588403 40588547 -60791974 + MER44D DNA MER2_type 204 609 0 279 287 30 0 chr15 40588999 40589100 -60791421 + L1P LINE L1 4878 4981 -1165 208 327 89 71 chr15 40589837 40589920 -60790601 - MIR3 SINE MIR -23 185 105 2168 104 7 7 chr15 40589920 40590218 -60790303 + AluSx SINE Alu 1 298 -14 208 327 89 71 chr15 40590218 40590302 -60790219 - MIR3 SINE MIR -103 105 15 2238 115 3 0 chr15 40591468 40591772 -60788749 - AluSx SINE Alu -7 305 1 1822 131 32 3 chr15 40592490 40592773 -60787748 + AluJb SINE Alu 3 293 -19 491 196 81 40 chr15 40594744 40594892 -60785629 - MER5A DNA MER1_type 0 189 36 276 198 140 89 chr15 40594907 40595021 -60785500 - Charlie7 DNA MER1_type -4 2608 2482 2215 114 7 0 chr15 40595021 40595319 -60785202 - AluSx SINE Alu -12 300 1 276 198 140 89 chr15 40595319 40595361 -60785160 - Charlie7 DNA MER1_type -130 2482 2444 184 272 342 0 chr15 40595447 40595561 -60784960 + MER5A DNA MER1_type 2 154 -35 674 288 44 40 chr15 40596061 40596311 -60784210 + MIR SINE MIR 2 252 -10 1432 139 48 91 chr15 40597321 40597519 -60783002 - AluJb SINE Alu -1 311 129 2035 92 20 27 chr15 40597519 40597812 -60782709 + AluSp SINE Alu 1 291 -22 1432 139 48 91 chr15 40597812 40597922 -60782599 - AluJb SINE Alu -183 129 16 2016 108 31 3 chr15 40598082 40598370 -60782151 + AluSx SINE Alu 1 296 -16 518 287 169 33 chr15 40598396 40598668 -60781853 - L2 LINE L2 -2 3311 3003 1647 139 87 14 chr15 40600305 40600592 -60779929 - AluJb SINE Alu -4 308 1 767 172 210 0 chr15 40601745 40601902 -60778619 - MER3 DNA MER1_type -14 195 6 1290 148 118 53 chr15 40602644 40602885 -60777636 + MER33 DNA MER1_type 1 268 -2317 2011 110 7 0 chr15 40602885 40603192 -60777329 - AluSx SINE Alu 0 319 11 1290 148 118 53 chr15 40603192 40603253 -60777268 + MER33 DNA MER1_type 268 324 0 2419 81 0 7 chr15 40604222 40604519 -60776002 + AluSg SINE Alu 1 295 -15 529 210 10 0 chr15 40604837 40604937 -60775584 + Charlie5 DNA MER1_type 1 101 -2511 1154 129 12 0 chr15 40604940 40605110 -60775411 - AluSg/x SINE Alu -14 296 125 1114 157 95 19 chr15 40605128 40605390 -60775131 + Charlie5 DNA MER1_type 2234 2515 -97 1362 316 73 13 chr15 40606259 40606888 -60773633 + L2 LINE L2 731 1397 -1917 215 300 62 0 chr15 40606889 40606969 -60773552 + L2 LINE L2 1536 1620 -1694 1090 132 107 0 chr15 40606988 40607185 -60773336 + MER44D DNA MER2_type 32 519 -90 1597 118 49 0 chr15 40607188 40607434 -60773087 - Tigger2 DNA MER2_type 0 2718 2461 3216 139 29 89 chr15 40607490 40607705 -60772816 - Tigger2 DNA MER2_type -1974 744 518 779 177 8 0 chr15 40607705 40607829 -60772692 - FLAM_A SINE Alu -4 129 5 3216 139 29 89 chr15 40607829 40608126 -60772395 - Tigger2 DNA MER2_type -2200 518 205 2162 97 20 10 chr15 40608126 40608424 -60772097 - AluSq SINE Alu -12 301 1 3216 139 29 89 chr15 40608424 40608454 -60772067 - Tigger2 DNA MER2_type -2513 205 175 2079 130 7 7 chr15 40608454 40608753 -60771768 - AluSx SINE Alu -13 299 1 3216 139 29 89 chr15 40608753 40608862 -60771659 - Tigger2 DNA MER2_type -2543 175 130 1076 156 0 0 chr15 40608862 40609016 -60771505 + AluJb SINE Alu 136 289 -23 789 189 0 0 chr15 40609017 40609160 -60771361 - Tigger2 DNA MER2_type -2575 143 1 530 172 11 0 chr15 40609160 40609246 -60771275 + MER44D DNA MER2_type 519 605 0 500 311 72 14 chr15 40609274 40609483 -60771038 + L2 LINE L2 2489 2709 -605 376 337 111 11 chr15 40609749 40609930 -60770591 + L2 LINE L2 2717 2915 -399 1967 113 0 8 chr15 40610065 40610330 -60770191 + AluSx SINE Alu 42 304 -8 411 279 108 0 chr15 40610367 40610496 -60770025 + MIR SINE MIR 110 252 -10 23 0 0 0 chr15 40611721 40611744 -60768777 + AT_rich Low_complexity Low_complexity 1 23 0 660 271 40 56 chr15 40611773 40611934 -60768587 + Charlie8 DNA MER1_type 1 158 -183 2184 102 7 3 chr15 40611934 40612229 -60768292 + AluSx SINE Alu 2 297 -15 660 271 40 56 chr15 40612229 40612318 -60768203 + Charlie8 DNA MER1_type 158 247 -94 1649 149 97 14 chr15 40612322 40612610 -60767911 - AluSx SINE Alu 0 312 1 883 141 0 8 chr15 40612617 40612745 -60767776 - FLAM_C SINE Alu -16 127 1 2154 104 3 10 chr15 40613073 40613372 -60767149 - AluSq SINE Alu -16 297 1 1472 157 3 105 chr15 40613454 40613778 -60766743 + AluJo SINE Alu 5 295 -17 1993 142 10 7 chr15 40614448 40614750 -60765771 - AluSx SINE Alu -9 303 1 367 299 33 48 chr15 40614829 40615018 -60765503 - MIR SINE MIR -56 206 27 4802 148 81 45 chr15 40615042 40615991 -60764530 - L1MB7 LINE L1 0 6184 5271 9074 168 20 44 chr15 40615991 40616386 -60764135 - L1PA15 LINE L1 -6 6159 5756 1718 82 182 43 chr15 40616386 40616715 -60763806 + THE1C LTR MaLR 1 375 0 9074 168 20 44 chr15 40616715 40618798 -60761723 - L1PA15 LINE L1 -409 5756 3739 2473 63 0 13 chr15 40618798 40619100 -60761421 - AluY SINE Alu -13 298 1 9074 168 20 44 chr15 40619100 40619225 -60761296 - L1PA15 LINE L1 -2426 3739 3613 4802 148 81 45 chr15 40619225 40619551 -60760970 - L1MB7 LINE L1 -913 5271 4891 305 212 10 50 chr15 40619573 40619672 -60760849 - L1ME4a LINE L1 -72 6049 5955 420 296 9 9 chr15 40619707 40619822 -60760699 - MIR SINE MIR -105 157 43 1665 195 0 35 chr15 40620090 40620403 -60760118 - AluJo SINE Alu -10 302 1 29 28 0 0 chr15 40620537 40620573 -60759948 + AT_rich Low_complexity Low_complexity 1 36 0 2272 110 7 0 chr15 40620588 40620896 -60759625 - AluSx SINE Alu -1 311 2 603 291 137 8 chr15 40620918 40621348 -60759173 - L1ME4a LINE L1 -294 5876 5503 423 0 0 0 chr15 40621348 40621395 -60759126 + (TG)n Simple_repeat Simple_repeat 2 48 0 603 291 137 8 chr15 40621395 40621715 -60758806 - L1ME4a LINE L1 -667 5503 5016 802 147 0 0 chr15 40621719 40621835 -60758686 - AluYa5 SINE Alu -62 249 134 2487 61 3 7 chr15 40621954 40622264 -60758257 + AluSc SINE Alu 1 309 0 1357 190 6 80 chr15 40622272 40622598 -60757923 + AluJb SINE Alu 1 302 -10 2349 93 7 0 chr15 40622623 40622925 -60757596 - AluSx SINE Alu -8 304 1 2335 99 7 0 chr15 40624916 40625220 -60755301 - AluSp SINE Alu -7 306 1 182 258 0 0 chr15 40625918 40625949 -60754572 - L2 LINE L2 -18 3254 3224 2262 114 0 3 chr15 40627099 40627406 -60753115 - AluSg SINE Alu -4 306 1 1194 74 27 0 chr15 40627670 40627818 -60752703 - L1PA8 LINE L1 -15 6157 6006 21 0 0 0 chr15 40627862 40627883 -60752638 + AT_rich Low_complexity Low_complexity 1 21 0 285 253 137 14 chr15 40627898 40628044 -60752477 - L1ME4a LINE L1 -2 6119 5956 869 199 50 0 chr15 40628089 40628250 -60752271 - FRAM SINE Alu -6 170 2 2276 101 7 0 chr15 40628680 40628977 -60751544 + AluSp SINE Alu 1 299 -14 257 216 20 0 chr15 40628983 40629034 -60751487 + MIR SINE MIR 56 107 -155 1873 160 0 0 chr15 40629069 40629356 -60751165 - AluJb SINE Alu -12 300 14 2009 145 0 23 chr15 40629363 40629673 -60750848 - AluSx SINE Alu -9 303 1 3861 136 20 9 chr15 40629699 40630284 -60750237 - L1 LINE L1 -1665 4481 3887 2298 98 0 13 chr15 40630284 40630590 -60749931 - AluY SINE Alu -9 302 1 3861 136 20 9 chr15 40630590 40630657 -60749864 - L1 LINE L1 -2259 3887 3822 1614 139 27 131 chr15 40630863 40631200 -60749321 - AluJo SINE Alu 0 302 1 1463 170 71 54 chr15 40631449 40631785 -60748736 + MER2 DNA MER2_type 2 343 -1 2434 76 10 19 chr15 40632455 40632769 -60747752 + AluY SINE Alu 1 311 0 256 293 17 0 chr15 40633051 40633109 -60747412 - L2 LINE L2 -7 3265 3207 354 316 128 37 chr15 40633377 40633564 -60746957 - MIR SINE MIR -57 205 2 1956 123 47 0 chr15 40635101 40635377 -60745144 - AluSx SINE Alu -23 289 1 226 265 0 0 chr15 40635481 40635530 -60744991 + Charlie4 DNA MER1_type 2 50 -1911 1449 261 97 21 chr15 40635743 40636219 -60744302 + LTR33A LTR ERVL 4 515 -8 384 292 56 50 chr15 40636520 40636681 -60743840 + MIR3 SINE MIR 9 170 -38 30 27 0 0 chr15 40636718 40636755 -60743766 + AT_rich Low_complexity Low_complexity 1 37 0 2182 61 27 24 chr15 40636944 40637237 -60743284 - AluY SINE Alu -17 294 1 1794 138 10 61 chr15 40637544 40637704 -60742817 - AluJb SINE Alu -16 296 158 2381 104 0 0 chr15 40637704 40638011 -60742510 - AluSx SINE Alu -5 307 1 1794 138 10 61 chr15 40638011 40638162 -60742359 - AluJb SINE Alu -154 158 1 2173 102 17 0 chr15 40638192 40638486 -60742035 - AluSx SINE Alu -13 299 1 225 0 0 0 chr15 40638900 40638925 -60741596 + (A)n Simple_repeat Simple_repeat 1 25 0 918 285 85 38 chr15 40639093 40639618 -60740903 + L1ME4a LINE L1 5270 5828 -293 2238 84 17 13 chr15 40639618 40639917 -60740604 - AluY SINE Alu -11 300 1 918 285 85 38 chr15 40639917 40639991 -60740530 + L1ME4a LINE L1 5828 5897 -224 330 238 25 12 chr15 40639998 40640078 -60740443 + L2 LINE L2 3232 3312 -1 302 163 0 0 chr15 40640119 40640168 -60740353 + L1ME4a LINE L1 5973 6021 -100 30 0 0 0 chr15 40640211 40640241 -60740280 + AT_rich Low_complexity Low_complexity 1 30 0 1561 156 80 8 chr15 40640241 40640504 -60740017 - AluJo SINE Alu -30 282 1 1020 181 12 0 chr15 40641705 40641871 -60738650 + FRAM SINE Alu 1 167 -9 1742 170 14 7 chr15 40642044 40642332 -60738189 - AluJb SINE Alu -22 290 1 768 211 51 11 chr15 40642429 40642604 -60737917 + MIR SINE MIR 62 243 -19 1841 148 35 0 chr15 40644016 40644306 -60736215 - AluJo SINE Alu -12 300 1 601 243 70 5 chr15 40644362 40644547 -60735974 - L1ME3A LINE L1 -222 5948 5752 470 248 15 15 chr15 40644542 40644675 -60735846 + L1M4 LINE L1 3922 4054 -2092 * 349 222 0 0 chr15 40644712 40644793 -60735728 - L1ME3A LINE L1 -2358 5427 5347 460 280 64 6 chr15 40644798 40644955 -60735566 + LTR33 LTR ERVL 1 166 -355 801 293 65 31 chr15 40645102 40645454 -60735067 - L1ME3A LINE L1 -1070 5076 4713 1909 166 0 0 chr15 40645481 40645783 -60734738 - AluSx SINE Alu -9 303 2 18713 130 21 94 chr15 40646244 40647630 -60732891 - L1P LINE L1 -2506 3640 2154 2370 90 0 7 chr15 40647630 40647931 -60732590 - AluSc SINE Alu -9 300 2 18713 130 21 94 chr15 40647931 40650459 -60730062 - L1P LINE L1 -3992 2154 12 343 316 66 74 chr15 40650745 40651001 -60729520 - L2 LINE L2 -5 3267 3014 317 319 40 31 chr15 40651699 40651925 -60728596 - L2 LINE L2 -1171 2143 1916 1796 162 40 0 chr15 40651940 40652236 -60728285 + AluJo SINE Alu 1 308 -4 861 244 85 0 chr15 40652403 40652674 -60727847 + AluJo SINE Alu 15 308 -4 230 337 35 0 chr15 40653263 40653349 -60727172 - L2 LINE L2 -1891 1423 1335 1080 226 28 0 chr15 40653449 40653701 -60726820 - LTR33 LTR ERVL -1 520 262 517 252 44 65 chr15 40653912 40654005 -60726516 + L1M4 LINE L1 3202 3296 -2850 1354 151 28 117 chr15 40654005 40654169 -60726352 + AluYb8 SINE Alu 1 123 -195 2242 99 10 0 chr15 40654169 40654463 -60726058 + AluSx SINE Alu 1 297 -15 1354 151 28 117 chr15 40654463 40654623 -60725898 + AluYb8 SINE Alu 123 296 -22 517 252 44 65 chr15 40654623 40654850 -60725671 + L1M4 LINE L1 3296 3515 -2631 859 122 0 0 chr15 40654907 40655022 -60725499 - FLAM_C SINE Alu -17 126 12 202 224 105 26 chr15 40655081 40655157 -60725364 + L2 LINE L2 3191 3272 -41 1872 128 7 47 chr15 40655545 40655841 -60724680 + AluSx SINE Alu 1 284 -28 191 30 0 61 chr15 40656162 40656195 -60724326 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 612 152 4 34 chr15 40657051 40657289 -60723232 + CT-rich Low_complexity Low_complexity 1 230 0 688 106 43 0 chr15 40657289 40657383 -60723138 - HY3 scRNA scRNA -3 98 1 310 164 14 14 chr15 40657388 40657461 -60723060 + L1ME4a LINE L1 6047 6119 -2 374 218 197 16 chr15 40657679 40657821 -60722700 + MIR SINE MIR 16 179 -68 858 142 0 57 chr15 40657849 40657990 -60722531 - FLAM_A SINE Alu 0 133 1 23 0 0 0 chr15 40658002 40658025 -60722496 + AT_rich Low_complexity Low_complexity 1 23 0 23171 136 43 44 chr15 40658183 40659395 -60721126 - L1MA3 LINE L1 -27 7697 6485 1210 196 20 42 chr15 40659395 40659701 -60720820 - AluSx SINE Alu -13 299 1 23171 136 43 44 chr15 40659701 40660354 -60720167 - L1MA3 LINE L1 -1239 6485 5833 2159 144 0 0 chr15 40660354 40660666 -60719855 - AluSx SINE Alu 0 312 1 23171 136 43 44 chr15 40660666 40661437 -60719084 - L1MA3 LINE L1 -1891 5833 5062 2249 153 81 27 chr15 40661437 40661478 -60719043 - MSTA LTR MaLR 0 428 391 2163 141 0 10 chr15 40661478 40661791 -60718730 + AluSx SINE Alu 1 310 -2 2249 153 81 27 chr15 40661791 40662155 -60718366 - MSTA LTR MaLR -37 391 1 23171 136 43 44 chr15 40662155 40663059 -60717462 - L1MA3 LINE L1 -2662 5062 4158 2192 115 0 3 chr15 40663059 40663354 -60717167 + AluY SINE Alu 1 294 -17 23171 136 43 44 chr15 40663354 40664064 -60716457 - L1MA3 LINE L1 -3566 4158 3449 1443 174 0 88 chr15 40664064 40664381 -60716140 - AluJb SINE Alu -23 289 1 23171 136 43 44 chr15 40664381 40665250 -60715271 - L1MA3 LINE L1 -4275 3449 2580 2086 129 3 0 chr15 40665250 40665545 -60714976 - AluSg SINE Alu -14 296 1 23171 136 43 44 chr15 40665545 40665877 -60714644 - L1MA3 LINE L1 -5144 2580 2249 2188 130 7 0 chr15 40665877 40666177 -60714344 - AluSx SINE Alu -10 302 1 23171 136 43 44 chr15 40666177 40668400 -60712121 - L1MA3 LINE L1 -5475 2249 15 300 225 150 0 chr15 40668423 40668449 -60712072 - L1MA10 LINE L1 -24 6310 6285 2349 201 79 28 chr15 40668449 40668970 -60711551 - L1ME1 LINE L1 -45 6121 5563 2309 124 0 0 chr15 40668970 40669276 -60711245 - AluSx SINE Alu -6 306 1 2349 201 79 28 chr15 40669276 40669360 -60711161 - L1ME1 LINE L1 -603 5563 5485 835 162 7 7 chr15 40669477 40669613 -60710908 + AluJo SINE Alu 1 136 -176 21 0 0 0 chr15 40670123 40670144 -60710377 + AT_rich Low_complexity Low_complexity 1 21 0 224 262 0 16 chr15 40670163 40670224 -60710297 - MIR SINE MIR -20 242 183 211 205 0 0 chr15 40670722 40670761 -60709760 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 263 170 113 0 chr15 40670761 40670814 -60709707 - L2 LINE L2 0 3313 3255 182 227 136 0 chr15 40671235 40671301 -60709220 + MIR SINE MIR 75 149 -59 496 264 91 53 chr15 40672370 40672578 -60707943 - MIR SINE MIR -1 261 46 1795 131 39 20 chr15 40672794 40673100 -60707421 + AluJo SINE Alu 1 312 0 313 270 0 0 chr15 40673604 40673678 -60706843 - MIR SINE MIR -149 113 40 259 228 139 0 chr15 40674074 40674175 -60706346 - Charlie7 DNA MER1_type -2453 159 45 1867 132 78 24 chr15 40674547 40674842 -60705679 + AluSx SINE Alu 1 311 -1 211 217 43 0 chr15 40674897 40674943 -60705578 - L2 LINE L2 -26 3246 3199 263 186 0 0 chr15 40675856 40675899 -60704622 + 5S rRNA rRNA 1 43 -78 256 268 27 98 chr15 40677085 40677197 -60703324 - MIR3 SINE MIR -54 154 51 1681 95 204 0 chr15 40677203 40677479 -60703042 - MER7A DNA MER2_type -1 336 18 262 289 155 0 chr15 40678341 40678438 -60702083 - MIR3 SINE MIR -29 179 68 2260 142 24 6 chr15 40678559 40678897 -60701624 + MER2 DNA MER2_type 1 344 0 874 114 0 54 chr15 40679152 40679301 -60701220 + FLAM_C SINE Alu 1 141 -2 2601 212 138 72 chr15 40679560 40679650 -60700871 - MER21B LTR ERV1 -5 858 775 2267 167 14 39 chr15 40679650 40680019 -60700502 - MER57A LTR ERV1 0 403 27 1419 168 112 28 chr15 40680019 40680305 -60700216 - AluJo SINE Alu -2 310 1 2267 167 14 39 chr15 40680305 40680326 -60700195 - MER57A LTR ERV1 -376 27 21 2029 128 3 0 chr15 40680326 40680615 -60699906 - AluSq SINE Alu -23 290 1 2267 167 14 39 chr15 40680615 40680636 -60699885 - MER57A LTR ERV1 -382 21 1 2601 212 138 72 chr15 40680636 40681350 -60699171 - MER21B LTR ERV1 -88 775 1 485 243 10 129 chr15 40681365 40681422 -60699099 + MER5B DNA MER1_type 1 63 -115 429 36 0 0 chr15 40681422 40681477 -60699044 + (CA)n Simple_repeat Simple_repeat 2 56 0 485 243 10 129 chr15 40681477 40681488 -60699033 + MER5B DNA MER1_type 63 74 -104 2033 122 19 0 chr15 40681488 40681817 -60698704 + AluSg SINE Alu 4 337 0 485 243 10 129 chr15 40681817 40681948 -60698573 + MER5B DNA MER1_type 74 178 0 2416 198 40 2 chr15 40682045 40682489 -60698032 - MER65C LTR ERV1 0 461 1 987 233 34 99 chr15 40682735 40682895 -60697626 + AluJb SINE Alu 1 170 -132 2262 88 3 14 chr15 40682895 40683189 -60697332 - AluSg SINE Alu -19 291 1 987 233 34 99 chr15 40683189 40683214 -60697307 + AluJb SINE Alu 170 195 -107 1460 121 0 0 chr15 40683214 40683404 -60697117 + AluSg/x SINE Alu 91 280 -32 987 233 34 99 chr15 40683404 40683539 -60696982 + AluJb SINE Alu 195 301 -1 238 250 0 0 chr15 40683539 40683583 -60696938 + MER8 DNA MER2_type 196 239 0 1728 157 19 26 chr15 40683780 40684093 -60696428 - AluJo SINE Alu -1 311 1 457 95 0 0 chr15 40684584 40684647 -60695874 - Alu SINE Alu -9 302 240 2156 90 0 28 chr15 40685062 40685350 -60695171 - AluSg SINE Alu -10 300 21 355 154 0 0 chr15 40685444 40685496 -60695025 + MSTC LTR MaLR 1 52 -376 1386 143 0 23 chr15 40685497 40685714 -60694807 + AluJo SINE Alu 1 212 -100 240 189 0 0 chr15 40685714 40685751 -60694770 + Alu SINE Alu 75 111 -22 621 58 0 0 chr15 40685752 40685838 -60694683 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 31 0 0 0 chr15 40685838 40685869 -60694652 + AT_rich Low_complexity Low_complexity 1 31 0 916 161 195 99 chr15 40685882 40686173 -60694348 + MSTC LTR MaLR 41 303 -125 1268 179 93 48 chr15 40686173 40686317 -60694204 - AluJo SINE Alu -8 304 168 2447 81 0 0 chr15 40686317 40686614 -60693907 - AluY SINE Alu -14 297 1 812 156 0 21 chr15 40686619 40686760 -60693761 - AluJo SINE Alu -174 138 1 916 161 195 99 chr15 40686760 40686822 -60693699 + MSTC LTR MaLR 303 428 0 297 312 0 0 chr15 40686880 40686957 -60693564 - LTR16A1 LTR ERVL 0 457 381 505 104 0 0 chr15 40686958 40687025 -60693496 + AluSp/q SINE Alu 231 297 -16 724 262 32 63 chr15 40687027 40687374 -60693147 - LTR16A1 LTR ERVL -67 390 55 205 200 89 0 chr15 40687647 40687692 -60692829 - L2 LINE L2 -2 3311 3263 1428 153 18 9 chr15 40687829 40688058 -60692463 - MER46A DNA MER2_type 0 236 6 814 255 57 21 chr15 40688524 40688806 -60691715 - MER20B DNA MER1_type -186 597 306 27 29 0 0 chr15 40688842 40688876 -60691645 + AT_rich Low_complexity Low_complexity 1 34 0 2200 81 18 0 chr15 40688926 40689211 -60691310 - AluSx SINE Alu -22 290 1 3810 167 74 6 chr15 40690296 40691009 -60689512 - L1MB8 LINE L1 -12 6166 5405 2230 126 0 7 chr15 40691344 40691654 -60688867 + AluSx SINE Alu 1 308 -4 398 276 75 46 chr15 40693069 40693120 -60687401 + MLT1J LTR MaLR 293 341 -170 4656 130 106 52 chr15 40693120 40693444 -60687077 + MER49 LTR ERV1 1 306 -617 225 0 0 0 chr15 40693444 40693469 -60687052 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 4656 130 106 52 chr15 40693469 40693543 -60686978 + MER49 LTR ERV1 306 375 -548 2306 89 0 3 chr15 40693543 40693845 -60686676 - AluY SINE Alu -10 301 1 4656 130 106 52 chr15 40693845 40693993 -60686528 + MER49 LTR ERV1 375 514 -409 2175 124 3 0 chr15 40693993 40694291 -60686230 + AluSx SINE Alu 1 299 -13 4656 130 106 52 chr15 40694291 40694618 -60685903 + MER49 LTR ERV1 514 923 0 398 276 75 46 chr15 40694618 40694740 -60685781 + MLT1J LTR MaLR 341 471 -40 260 93 116 0 chr15 40694733 40694776 -60685745 - MLT2C1 LTR ERVL -348 49 2 * 2050 156 0 0 chr15 40694802 40695109 -60685412 - AluJb SINE Alu -3 309 3 259 293 143 27 chr15 40695184 40695352 -60685169 - MIR3 SINE MIR -6 202 7 241 314 35 23 chr15 40695539 40695625 -60684896 - L2 LINE L2 -74 3198 3112 857 152 23 15 chr15 40695681 40695813 -60684708 + FLAM_C SINE Alu 1 133 0 664 173 21 13 chr15 40695821 40696062 -60684459 + GA-rich Low_complexity Low_complexity 1 243 0 338 87 22 0 chr15 40696105 40696151 -60684370 + MER20 DNA MER1_type 30 76 -143 3867 77 4 2 chr15 40696293 40696800 -60683721 - L1P LINE L1 -1812 4334 3827 258 32 0 0 chr15 40696800 40696831 -60683690 + (GGAA)n Simple_repeat Simple_repeat 3 33 0 1105 140 26 79 chr15 40696838 40697067 -60683454 + MER20 DNA MER1_type 3 219 0 21 36 0 0 chr15 40698343 40698371 -60682150 + AT_rich Low_complexity Low_complexity 1 28 0 227 274 0 0 chr15 40698893 40698944 -60681577 + L3 LINE CR1 1421 1471 -106 2028 125 0 46 chr15 40699721 40700048 -60680473 - AluSx SINE Alu 0 312 1 582 254 152 5 chr15 40700349 40700566 -60679955 + MIR SINE MIR 13 261 -1 10276 50 1 7 chr15 40700844 40702106 -60678415 + L1PA3 LINE L1 54 1307 -4839 28033 27 10 0 chr15 40702106 40706025 -60674496 + L1PA3 LINE L1 2224 6155 0 5287 232 89 24 chr15 40706025 40708051 -60672470 + L1M4 LINE L1 17 2163 -4483 252 0 0 0 chr15 40708309 40708337 -60672184 + (CA)n Simple_repeat Simple_repeat 1 28 0 453 285 0 35 chr15 40709037 40709209 -60671312 + L1MEd LINE L1 1022 1187 -4932 943 143 6 66 chr15 40709804 40709986 -60670535 - AluJb SINE Alu -141 171 1 2035 131 18 50 chr15 40709998 40710341 -60670180 - L1MB5 LINE L1 0 6410 6079 2100 95 0 83 chr15 40711244 40711571 -60668950 + AluSx SINE Alu 1 300 -12 326 103 184 92 chr15 40711571 40711658 -60668863 - MER57-int LTR ERV1 -2194 5343 5249 * 1743 104 8 4 chr15 40711657 40711908 -60668613 - MER57-int LTR ERV1 -2572 2645 2394 1828 193 29 33 chr15 40712140 40712709 -60667812 - L1MB5 LINE L1 -428 5982 5423 1895 224 36 19 chr15 40712727 40713234 -60667287 - L1MB5 LINE L1 -2448 3934 3437 1623 65 0 0 chr15 40713234 40713433 -60667088 - AluY SINE Alu 0 311 113 1895 224 36 19 chr15 40713433 40713475 -60667046 - L1MB5 LINE L1 -2945 3437 3397 1244 209 19 60 chr15 40713475 40713640 -60666881 - AluJb SINE Alu 0 302 155 1740 176 0 0 chr15 40713640 40713935 -60666586 - AluSx SINE Alu -15 297 3 1244 209 19 60 chr15 40713935 40714084 -60666437 - AluJb SINE Alu -147 155 1 1895 224 36 19 chr15 40714084 40714119 -60666402 - L1MB5 LINE L1 -2985 3397 3339 1836 218 106 119 chr15 40714451 40715466 -60665055 - L1MB5 LINE L1 -3685 2697 1670 611 167 167 0 chr15 40715466 40715568 -60664953 - AluJb SINE Alu -193 119 1 1836 218 106 119 chr15 40715568 40715872 -60664649 - L1MB5 LINE L1 -4712 1670 1302 2058 129 3 3 chr15 40715872 40716166 -60664355 - AluSq SINE Alu -19 294 1 1836 218 106 119 chr15 40716166 40716274 -60664247 - L1MB5 LINE L1 -5080 1302 1194 2027 118 6 48 chr15 40716275 40716590 -60663931 - AluSq SINE Alu -11 302 1 937 144 8 0 chr15 40718212 40718344 -60662177 - FLAM_C SINE Alu 0 133 1 344 313 125 82 chr15 40719354 40719770 -60660751 - L2 LINE L2 0 3272 2839 1081 181 70 0 chr15 40719777 40719992 -60660529 - AluJo SINE Alu -82 230 1 494 325 175 12 chr15 40720003 40720329 -60660192 - L2 LINE L2 -2260 1054 676 225 0 0 0 chr15 40721102 40721127 -60659394 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1396 234 92 28 chr15 40722775 40723074 -60657447 - L1ME1 LINE L1 -7 6159 5828 2444 61 0 3 chr15 40723074 40723370 -60657151 - AluY SINE Alu -16 295 1 1396 234 92 28 chr15 40723370 40723463 -60657058 - L1ME1 LINE L1 -338 5828 5742 802 212 77 84 chr15 40723480 40723635 -60656886 - L1ME1 LINE L1 -615 5551 5396 1605 207 4 4 chr15 40723635 40723915 -60656606 - AluSx SINE Alu -29 283 4 802 212 77 84 chr15 40723915 40724114 -60656407 - L1ME1 LINE L1 -770 5396 5195 2422 66 10 7 chr15 40724115 40724420 -60656101 - AluY SINE Alu -5 306 1 306 292 11 11 chr15 40724421 40724510 -60656011 - L1MEc LINE L1 -4899 1485 1397 3003 184 28 3 chr15 40724635 40725201 -60655320 - L1MC3 LINE L1 -155 7630 7051 230 220 0 0 chr15 40725200 40725250 -60655271 - L1MEc LINE L1 -5572 991 942 * 1304 271 36 26 chr15 40725265 40725733 -60654788 - L1MEc LINE L1 -5600 963 491 22 70 0 0 chr15 40725859 40725902 -60654619 + AT_rich Low_complexity Low_complexity 1 43 0 314 27 0 0 chr15 40726214 40726251 -60654270 + AluY SINE Alu 21 57 -246 690 246 80 26 chr15 40726255 40726568 -60653953 + L1MDa LINE L1 2129 2458 -4082 1094 235 43 4 chr15 40726571 40726848 -60653673 + L1MDa LINE L1 3797 4084 -2456 1966 120 19 19 chr15 40726848 40727157 -60653364 + AluSx SINE Alu 1 309 -3 1626 159 85 0 chr15 40728935 40729206 -60651315 - AluJb SINE Alu -18 294 1 180 0 0 0 chr15 40729381 40729401 -60651120 + (TA)n Simple_repeat Simple_repeat 2 21 0 779 183 9 0 chr15 40729409 40729524 -60650997 - FLAM_C SINE Alu -26 117 2 1097 182 52 0 chr15 40730154 40730346 -60650175 - AluJo SINE Alu -24 288 87 485 243 5 141 chr15 40730369 40730575 -60649946 + MER5B DNA MER1_type 1 178 0 3745 121 9 7 chr15 40730614 40731160 -60649361 - L1PB1 LINE L1 -4 6147 5601 4524 68 28 6 chr15 40731160 40732132 -60648389 + MER11A LTR ERVK 5 1235 -31 10526 189 5 20 chr15 40732143 40732963 -60647558 - L1PB1 LINE L1 -542 5609 4778 2169 108 0 23 chr15 40732963 40733270 -60647251 - AluY SINE Alu -11 300 1 10526 189 5 20 chr15 40733270 40734566 -60645955 - L1PB1 LINE L1 -1373 4778 3538 2146 136 0 13 chr15 40734566 40734882 -60645639 - AluSx SINE Alu 0 312 1 10526 189 5 20 chr15 40734882 40735377 -60645144 - L1PB1 LINE L1 -2613 3538 3037 2175 108 27 0 chr15 40735381 40735678 -60644843 - AluSq SINE Alu -8 305 1 23 33 0 0 chr15 40735748 40735778 -60644743 + AT_rich Low_complexity Low_complexity 1 30 0 1933 99 4 0 chr15 40735820 40736082 -60644439 - AluSc SINE Alu -3 306 44 1544 217 119 40 chr15 40736589 40737059 -60643462 + MLT1H LTR MaLR 1 507 -42 2354 83 0 3 chr15 40737059 40737360 -60643161 - AluY SINE Alu -11 300 1 1095 179 43 83 chr15 40737385 40737577 -60642944 - L1MA8 LINE L1 -5 6286 6111 2263 58 0 0 chr15 40737577 40737835 -60642686 - AluY SINE Alu -19 292 35 1095 179 43 83 chr15 40737835 40737967 -60642554 - L1MA8 LINE L1 -180 6111 5975 389 288 98 37 chr15 40738019 40738234 -60642287 + HAL1b LINE L1 515 742 -606 260 240 22 84 chr15 40739653 40739832 -60640689 + L1M3 LINE L1 4665 4832 -1314 549 315 84 18 chr15 40739933 40740386 -60640135 + L1M3 LINE L1 5330 5816 -364 958 127 0 7 chr15 40740496 40740646 -60639875 - L1MA1 LINE L1 0 6302 6154 21 36 0 0 chr15 40740660 40740688 -60639833 + AT_rich Low_complexity Low_complexity 1 28 0 475 211 86 8 chr15 40741061 40741189 -60639332 - AluJb SINE Alu -170 142 5 5149 143 140 7 chr15 40742005 40742905 -60637616 + LTR28 LTR ERV1 1 1020 0 22 0 0 0 chr15 40743447 40743469 -60637052 + AT_rich Low_complexity Low_complexity 1 22 0 230 53 26 0 chr15 40743862 40743900 -60636621 + MER5C DNA MER1_type 76 114 -210 2247 122 3 0 chr15 40743901 40744205 -60636316 - AluSx SINE Alu -7 305 1 419 281 124 22 chr15 40744766 40744951 -60635570 - MIR SINE MIR -32 230 27 3974 28 0 10 chr15 40745579 40746072 -60634449 - L1PA3 LINE L1 -2953 3193 2706 18806 31 0 1 chr15 40746073 40749074 -60631447 + L1PA3 LINE L1 3168 6175 0 327 212 248 44 chr15 40749791 40749928 -60630593 - MER20B DNA MER1_type -595 188 24 1958 158 30 0 chr15 40750064 40750362 -60630159 - AluSx SINE Alu -5 307 1 306 213 191 64 chr15 40750879 40751020 -60629501 + L2 LINE L2 3109 3267 -5 246 316 0 32 chr15 40751155 40751250 -60629271 + MIR3 SINE MIR 15 106 -102 239 289 0 0 chr15 40752609 40752661 -60627860 - LTR30 LTR ERV1 -670 52 1 10644 97 16 18 chr15 40752664 40752946 -60627575 - HERV9 LTR ERV1 -2 8397 8116 2397 85 3 7 chr15 40752946 40753251 -60627270 + AluY SINE Alu 1 304 -7 10644 97 16 18 chr15 40753251 40754482 -60626039 - HERV9 LTR ERV1 -283 8116 6887 * 14069 102 3 4 chr15 40754480 40756377 -60624144 - HERV9 LTR ERV1 -2831 5568 3674 18464 118 13 30 chr15 40756383 40758440 -60622081 + L1P LINE L1 11 2007 -4139 2326 116 0 0 chr15 40758440 40758751 -60621770 + AluY SINE Alu 1 311 0 18464 118 13 30 chr15 40758751 40759613 -60620908 + L1P LINE L1 2007 2882 -3264 7182 25 0 1 chr15 40759734 40760558 -60619963 - L1PA3 LINE L1 -79 6076 5254 770 137 15 23 chr15 40760561 40760692 -60619829 - AluJb SINE Alu -181 131 2 746 239 61 14 chr15 40760839 40761052 -60619469 + L1MB3 LINE L1 5729 5951 -232 636 71 12 0 chr15 40761185 40761269 -60619252 - AluSq/x SINE Alu -200 113 29 2113 135 3 0 chr15 40761295 40761598 -60618923 - AluSx SINE Alu -3 309 6 287 185 62 0 chr15 40761603 40761668 -60618853 + LTR37A LTR ERV1 287 355 -71 1636 193 3 17 chr15 40761668 40761969 -60618552 - AluJb SINE Alu -14 298 2 16229 75 2 3 chr15 40762361 40765359 -60615162 + L1PA6 LINE L1 3160 6153 -1 18355 119 12 18 chr15 40765361 40768940 -60611581 - HERV9 LTR ERV1 -4712 3687 54 724 174 50 0 chr15 40768962 40769083 -60611438 - LTR12 LTR ERV1 -236 478 352 293 266 21 11 chr15 40769083 40769177 -60611344 - LTR30 LTR ERV1 -104 618 524 898 205 16 21 chr15 40769245 40769435 -60611086 - LTR12 LTR ERV1 -510 204 16 1993 132 10 0 chr15 40769435 40769724 -60610797 + AluSx SINE Alu 13 304 -8 874 148 0 0 chr15 40769724 40769859 -60610662 - LTR8 LTR ERV1 -556 135 1 22219 133 51 49 chr15 40769859 40770672 -60609849 - HUERS-P1 LTR ERV1 0 6263 5453 1938 168 3 0 chr15 40770672 40770981 -60609540 - AluJb SINE Alu -2 310 1 22219 133 51 49 chr15 40770981 40774470 -60606051 - HUERS-P1 LTR ERV1 -810 5453 1242 186 43 0 0 chr15 40774470 40774493 -60606028 + (CA)n Simple_repeat Simple_repeat 2 24 0 22219 133 51 49 chr15 40774493 40775738 -60604783 - HUERS-P1 LTR ERV1 -5021 1242 1 4231 123 18 60 chr15 40775738 40776459 -60604062 - LTR8 LTR ERV1 0 691 1 1182 104 0 12 chr15 40777678 40777842 -60602679 + U1 snRNA snRNA 4 165 0 28 0 0 0 chr15 40777876 40777904 -60602617 + AT_rich Low_complexity Low_complexity 1 28 0 833 273 54 16 chr15 40778454 40778769 -60601752 - L2 LINE L2 -660 2654 2328 2479 116 13 84 chr15 40778770 40779235 -60601286 - MSTB1 LTR MaLR 0 432 1 7854 193 58 8 chr15 40779235 40780771 -60599750 - MSTB1-int LTR MaLR 0 1651 39 2354 91 0 10 chr15 40780771 40781069 -60599452 - AluY SINE Alu -16 295 1 359 310 63 0 chr15 40781076 40781234 -60599287 - L2 LINE L2 -1309 2005 1838 330 320 141 24 chr15 40781241 40781660 -60598861 - L2 LINE L2 0 3313 2846 1535 119 0 64 chr15 40782383 40782634 -60597887 + AluSx SINE Alu 1 235 -77 395 68 17 0 chr15 40782635 40782694 -60597827 + (GA)n Simple_repeat Simple_repeat 2 61 0 359 289 8 16 chr15 40782820 40782948 -60597573 + HAL1b LINE L1 521 647 -701 24 0 0 0 chr15 40783196 40783220 -60597301 + AT_rich Low_complexity Low_complexity 1 24 0 831 122 0 72 chr15 40783292 40783431 -60597090 + AluJo SINE Alu 7 135 -177 180 158 0 0 chr15 40783567 40783605 -60596916 + T-rich Low_complexity Low_complexity 1 38 0 35133 87 11 9 chr15 40783607 40789731 -60590790 - L1PA6 LINE L1 -1 6153 11 310 317 35 64 chr15 40789737 40789939 -60590582 + L1M4 LINE L1 2324 2519 -3627 227 237 26 13 chr15 40790008 40790084 -60590437 + L1M4 LINE L1 2662 2738 -3408 677 174 0 43 chr15 40790168 40790306 -60590215 + FLAM_C SINE Alu 2 133 0 701 227 0 6 chr15 40790326 40790502 -60590019 + L1M4 LINE L1 3608 3782 -2364 2331 90 13 7 chr15 40790509 40790810 -60589711 - AluSp SINE Alu -10 303 1 189 200 22 22 chr15 40790822 40790867 -60589654 - MER5B DNA MER1_type -124 54 10 361 247 47 100 chr15 40790968 40791027 -60589494 + MIR SINE MIR 8 69 -193 2281 105 0 3 chr15 40791027 40791333 -60589188 - AluY SINE Alu -6 305 1 361 247 47 100 chr15 40791333 40791463 -60589058 + MIR SINE MIR 69 187 -75 200 333 108 0 chr15 40792853 40792964 -60587557 - L2 LINE L2 -10 3303 3181 588 201 97 0 chr15 40793095 40793239 -60587282 + MIR SINE MIR 63 220 -42 973 172 63 77 chr15 40793281 40793566 -60586955 + MLT1D LTR MaLR 2 282 -223 186 314 0 0 chr15 40793880 40793931 -60586590 + MIR SINE MIR 177 227 -35 1233 180 79 0 chr15 40793931 40794198 -60586323 - MLT1D LTR MaLR 0 505 218 1429 172 108 13 chr15 40794655 40794969 -60585552 + MER2 DNA MER2_type 1 344 0 1115 196 14 19 chr15 40794990 40795204 -60585317 - AluJo SINE Alu -9 303 91 589 127 21 35 chr15 40795209 40795351 -60585170 - Charlie5 DNA MER1_type -62 2550 2411 1089 90 0 0 chr15 40795361 40795495 -60585026 + AluSx SINE Alu 3 136 -177 25 0 0 0 chr15 40795499 40795524 -60584997 + AT_rich Low_complexity Low_complexity 1 25 0 1177 140 0 6 chr15 40795533 40795711 -60584810 + AluSx SINE Alu 122 298 -12 545 173 122 8 chr15 40795713 40795844 -60584677 - MER33 DNA MER1_type -250 74 1 417 198 121 35 chr15 40795947 40796063 -60584458 - FLAM_C SINE Alu -4 129 4 2471 133 27 27 chr15 40796069 40796544 -60583977 - L1MA7 LINE L1 0 6291 5817 420 272 74 103 chr15 40797062 40797374 -60583147 - L2 LINE L2 -4 3268 2966 2290 112 3 0 chr15 40797406 40797709 -60582812 + AluSc SINE Alu 1 304 -5 407 309 111 11 chr15 40798643 40798824 -60581697 - MIR SINE MIR 0 262 64 646 263 42 33 chr15 40798824 40799250 -60581271 - L1MDa LINE L1 -2636 3904 3475 1643 192 10 7 chr15 40799257 40799565 -60580956 - AluJo SINE Alu -3 309 1 252 263 54 17 chr15 40799571 40799727 -60580794 - L1MDa LINE L1 -3858 2682 2518 2137 110 0 0 chr15 40800058 40800339 -60580182 - AluSx SINE Alu -31 281 1 576 139 122 26 chr15 40800360 40800475 -60580046 - FLAM_C SINE Alu -17 126 1 1023 220 69 4 chr15 40800573 40800805 -60579716 - MIR SINE MIR -14 248 2 21 0 0 0 chr15 40800937 40800958 -60579563 + AT_rich Low_complexity Low_complexity 1 21 0 241 237 0 0 chr15 40801113 40801172 -60579349 - MIR3 SINE MIR -11 197 139 1688 171 48 3 chr15 40801201 40801493 -60579028 - AluJo SINE Alu -7 305 1 2105 151 50 11 chr15 40801604 40802061 -60578460 + L1MB8 LINE L1 4869 5343 -803 4170 129 32 59 chr15 40802144 40802172 -60578349 + L1MB8 LINE L1 5348 5375 -803 1924 159 13 0 chr15 40802172 40802473 -60578048 + AluJb SINE Alu 1 305 -7 4170 129 32 59 chr15 40802473 40803295 -60577226 + L1MB8 LINE L1 5375 6175 -3 901 268 70 50 chr15 40803600 40804040 -60576481 - MLT1J LTR MaLR -4 507 59 1260 190 55 32 chr15 40804042 40804295 -60576226 + AluJo SINE Alu 1 259 -53 513 0 0 0 chr15 40804331 40804388 -60576133 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 2211 125 0 0 chr15 40804658 40804962 -60575559 - AluSc SINE Alu -5 304 1 964 143 23 6 chr15 40805950 40806125 -60574396 - MER61E LTR ERV1 -51 518 341 286 181 0 97 chr15 40806220 40806292 -60574229 - MER61E LTR ERV1 -406 163 99 233 389 74 17 chr15 40806634 40806809 -60573712 + MIR3 SINE MIR 10 194 -14 406 53 0 0 chr15 40806875 40806932 -60573589 + L1PA6 LINE L1 6097 6153 -1 2276 66 42 0 chr15 40807048 40807335 -60573186 - AluY SINE Alu -12 299 1 345 149 23 11 chr15 40807452 40807539 -60572982 + GA-rich Low_complexity Low_complexity 2 89 0 24 0 0 0 chr15 40808000 40808024 -60572497 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr15 40808803 40808824 -60571697 + AT_rich Low_complexity Low_complexity 1 21 0 249 209 45 0 chr15 40809169 40809236 -60571285 - MLT1K LTR MaLR -10 578 509 440 183 0 0 chr15 40809375 40809446 -60571075 - AluJb SINE Alu -32 280 210 1333 239 68 60 chr15 40809789 40810271 -60570250 + MLT1F LTR MaLR 1 486 -56 851 165 0 0 chr15 40810271 40810398 -60570123 + FLAM_C SINE Alu 1 127 -16 262 224 60 0 chr15 40810402 40810469 -60570052 + MLT1F LTR MaLR 497 567 0 865 142 0 127 chr15 40810697 40810798 -60569723 + MER20 DNA MER1_type 35 97 -122 2524 49 0 10 chr15 40810798 40811102 -60569419 - AluY SINE Alu -10 301 1 865 142 0 127 chr15 40811102 40811212 -60569309 + MER20 DNA MER1_type 97 219 0 2470 51 3 0 chr15 40811851 40812147 -60568374 - AluY SINE Alu -14 297 1 2430 75 7 0 chr15 40812716 40813021 -60567500 + AluY SINE Alu 1 307 -4 1669 174 3 30 chr15 40814099 40814403 -60566118 - AluJo SINE Alu -16 296 1 1093 163 0 100 chr15 40814428 40814501 -60566020 + AluJo SINE Alu 64 143 -169 1723 174 0 40 chr15 40814501 40814805 -60565716 + AluSx SINE Alu 1 292 -20 1093 163 0 100 chr15 40814805 40814970 -60565551 + AluJo SINE Alu 143 278 -34 198 0 0 0 chr15 40814970 40814992 -60565529 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 288 0 0 0 chr15 40814991 40815023 -60565498 + (CA)n Simple_repeat Simple_repeat 1 32 0 301 302 35 17 chr15 40815076 40815192 -60565329 + L1ME LINE L1 5614 5731 -390 804 176 5 64 chr15 40815196 40815383 -60565138 + AluJb SINE Alu 137 312 0 1768 149 14 14 chr15 40815434 40815730 -60564791 + AluSx SINE Alu 1 296 -16 2686 171 25 6 chr15 40816192 40816671 -60563850 + LTR42 LTR ERVL 8 495 0 1814 182 3 3 chr15 40816838 40817134 -60563387 - AluJb SINE Alu -14 298 3 274 122 0 0 chr15 40817280 40817321 -60563200 + U13 snRNA snRNA 5 45 -59 328 307 20 60 chr15 40817497 40817647 -60562874 + MIR SINE MIR 53 196 -66 2106 140 0 3 chr15 40818417 40818725 -60561796 - AluSx SINE Alu -5 307 1 205 340 125 28 chr15 40818974 40819118 -60561403 + MIR3 SINE MIR 16 173 -35 1760 178 20 0 chr15 40819330 40819623 -60560898 + AluJo SINE Alu 1 299 -13 1872 159 95 36 chr15 40819797 40820217 -60560304 + MER65A LTR ERV1 1 445 0 2511 74 6 3 chr15 40820262 40820574 -60559947 + AluSp SINE Alu 1 313 0 310 147 19 0 chr15 40820801 40820858 -60559663 - Alu SINE Alu -251 52 1 2133 78 11 4 chr15 40820900 40821170 -60559351 + AluSx SINE Alu 25 296 -16 206 0 69 0 chr15 40821855 40821884 -60558637 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1713 128 24 0 chr15 40822271 40822521 -60558000 + AluSg1 SINE Alu 41 296 -13 956 171 5 37 chr15 40823820 40824036 -60556485 + MER2 DNA MER2_type 1 209 -136 1103 201 14 18 chr15 40824161 40824380 -60556141 - AluJo SINE Alu -9 303 86 995 143 77 59 chr15 40824384 40824541 -60555980 - MER33 DNA MER1_type -2300 285 120 1279 161 20 141 chr15 40824541 40824889 -60555632 + AluYb8 SINE Alu 1 306 -2 995 143 77 59 chr15 40824889 40825022 -60555499 - MER33 DNA MER1_type -2465 120 1 430 191 122 35 chr15 40825125 40825240 -60555281 - FLAM_C SINE Alu -5 128 4 2552 126 27 27 chr15 40825251 40825726 -60554795 - L1MA7 LINE L1 0 6291 5817 462 262 63 110 chr15 40826252 40826569 -60553952 - L2 LINE L2 -4 3268 2967 2223 113 0 3 chr15 40826596 40826898 -60553623 + AluSc SINE Alu 1 301 -8 2188 78 3 53 chr15 40827248 40827567 -60552954 + AluY SINE Alu 1 303 -8 386 272 136 14 chr15 40828196 40828343 -60552178 - MIR SINE MIR -34 228 64 317 267 58 19 chr15 40828343 40828699 -60551822 - L1M4 LINE L1 -2636 3510 3128 1763 94 0 0 chr15 40828716 40828939 -60551582 - AluSc SINE Alu -86 223 1 911 160 23 6 chr15 40829927 40830102 -60550419 - MER61E LTR ERV1 -51 518 341 313 153 0 97 chr15 40830197 40830269 -60550252 - MER61E LTR ERV1 -406 163 99 * 453 212 62 0 chr15 40830266 40830379 -60550142 - LTR25 LTR ERV1 -431 363 244 268 371 74 17 chr15 40830610 40830785 -60549736 + MIR3 SINE MIR 10 194 -14 214 177 16 16 chr15 40831063 40831125 -60549396 + GA-rich Low_complexity Low_complexity 1 62 0 23 0 0 0 chr15 40832380 40832403 -60548118 + AT_rich Low_complexity Low_complexity 1 23 0 249 209 45 0 chr15 40832754 40832821 -60547700 - MLT1K LTR MaLR -10 578 509 446 169 0 56 chr15 40832930 40832944 -60547577 - AluJb SINE Alu -19 293 280 180 0 0 0 chr15 40832944 40832964 -60547557 + (TG)n Simple_repeat Simple_repeat 2 21 0 446 169 0 56 chr15 40832964 40833038 -60547483 - AluJb SINE Alu -32 280 210 1347 246 58 60 chr15 40833375 40833862 -60546659 + MLT1F LTR MaLR 1 486 -56 960 134 0 0 chr15 40833862 40833996 -60546525 + AluJo SINE Alu 1 134 -178 357 176 0 0 chr15 40833996 40834064 -60546457 + MLT1F LTR MaLR 500 567 0 906 113 41 97 chr15 40834294 40834489 -60546032 + MER20 DNA MER1_type 36 219 0 21 57 0 0 chr15 40834962 40834997 -60545524 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr15 40835264 40835292 -60545229 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr15 40835646 40835668 -60544853 + AT_rich Low_complexity Low_complexity 1 22 0 486 148 157 0 chr15 40835776 40835884 -60544637 + MER94 DNA DNA 10 134 0 282 207 16 41 chr15 40836217 40836338 -60544183 + (TA)n Simple_repeat Simple_repeat 2 119 0 683 125 29 0 chr15 40836396 40836500 -60544021 - U6 snRNA snRNA 0 107 1 2230 106 7 0 chr15 40836877 40837170 -60543351 + AluSx SINE Alu 1 295 -17 22 80 0 0 chr15 40837182 40837232 -60543289 + AT_rich Low_complexity Low_complexity 1 50 0 2244 111 0 3 chr15 40837242 40837540 -60542981 + AluSx SINE Alu 1 297 -15 2456 84 0 3 chr15 40837767 40838076 -60542445 + AluSq SINE Alu 1 308 -5 2248 101 0 7 chr15 40838276 40838584 -60541937 - AluY SINE Alu -5 306 1 1656 173 3 33 chr15 40840244 40840551 -60539970 - AluJo SINE Alu -14 298 1 1062 181 0 99 chr15 40840576 40840650 -60539871 + AluJo SINE Alu 64 144 -168 1513 174 0 51 chr15 40840650 40840944 -60539577 + AluSx SINE Alu 1 279 -33 1062 181 0 99 chr15 40840944 40841112 -60539409 + AluJo SINE Alu 144 282 -30 950 159 0 44 chr15 40841294 40841476 -60539045 + AluJb SINE Alu 137 310 -2 1944 135 0 26 chr15 40841539 40841843 -60538678 + AluSx SINE Alu 1 296 -16 2752 163 25 6 chr15 40842305 40842784 -60537737 + LTR42 LTR ERVL 8 495 0 1741 191 3 3 chr15 40842946 40843240 -60537281 - AluJb SINE Alu -14 298 5 268 156 0 0 chr15 40843378 40843423 -60537098 + U13 snRNA snRNA 1 45 -59 24 0 0 0 chr15 40843429 40843453 -60537068 + AT_rich Low_complexity Low_complexity 1 24 0 385 283 19 57 chr15 40843591 40843750 -60536771 + MIR SINE MIR 44 196 -66 645 120 29 6 chr15 40844426 40844601 -60535920 + (TA)n Simple_repeat Simple_repeat 1 179 0 32 43 0 0 chr15 40844602 40844648 -60535873 + AT_rich Low_complexity Low_complexity 1 46 0 2220 131 0 3 chr15 40844868 40845181 -60535340 - AluSx SINE Alu 0 312 1 205 340 125 28 chr15 40845430 40845574 -60534947 + MIR3 SINE MIR 16 173 -35 505 237 89 50 chr15 40845895 40845946 -60534575 - L1MC4 LINE L1 -2 8040 7992 2363 99 0 0 chr15 40845946 40846248 -60534273 + AluSc SINE Alu 1 302 -7 505 237 89 50 chr15 40846248 40846533 -60533988 - L1MC4 LINE L1 -50 7992 7691 752 271 96 27 chr15 40846535 40847049 -60533472 - L1MC4 LINE L1 -298 7510 6999 228 163 0 0 chr15 40847049 40847092 -60533429 + CT-rich Low_complexity Low_complexity 3 45 0 706 81 30 0 chr15 40847121 40847220 -60533301 - U6 snRNA snRNA -5 102 1 317 185 37 12 chr15 40847220 40847301 -60533220 - L1MC4 LINE L1 -989 7053 6971 317 148 19 0 chr15 40847411 40847465 -60533056 - MER57A LTR ERV1 -60 343 289 2095 112 0 39 chr15 40847734 40848039 -60532482 + AluSx SINE Alu 2 294 -18 378 200 191 26 chr15 40848315 40848430 -60532091 + MER5A DNA MER1_type 35 168 -21 235 173 19 0 chr15 40848465 40848517 -60532004 + (TA)n Simple_repeat Simple_repeat 2 54 0 288 211 30 4 chr15 40848540 40848778 -60531743 + (TA)n Simple_repeat Simple_repeat 1 244 0 1162 139 49 9 chr15 40848938 40849161 -60531360 + MER33 DNA MER1_type 5 236 -88 657 106 10 19 chr15 40849181 40849285 -60531236 - FAM SINE Alu -20 165 63 22 56 0 0 chr15 40849449 40849485 -60531036 + AT_rich Low_complexity Low_complexity 1 36 0 688 135 0 63 chr15 40849485 40849611 -60530910 - AluJb SINE Alu -194 118 1 186 250 145 13 chr15 40849611 40849687 -60530834 - MIR SINE MIR -111 151 66 411 194 83 46 chr15 40849691 40849799 -60530722 + L2 LINE L2 3160 3271 -1 1319 71 6 0 chr15 40850992 40851160 -60529361 - AluY SINE Alu -142 169 1 274 314 57 8 chr15 40851194 40851318 -60529203 + ERVL LTR ERVL 545 674 -5090 2499 57 0 16 chr15 40851469 40851785 -60528736 + AluY SINE Alu 1 311 0 1339 275 28 11 chr15 40851817 40852254 -60528267 + ERVL LTR ERVL 1055 1498 -4266 1136 89 0 19 chr15 40852758 40852916 -60527605 + AluY SINE Alu 157 311 0 1879 269 63 7 chr15 40852948 40853536 -60526985 + ERVL LTR ERVL 1055 1675 -4089 1873 157 104 27 chr15 40853554 40853967 -60526554 - MSTB2 LTR MaLR -12 445 1 4009 224 60 20 chr15 40853970 40855016 -60525505 + ERVL LTR ERVL 1678 2765 -2999 1840 76 8 38 chr15 40855016 40855280 -60525241 - AluY SINE Alu -7 304 49 712 189 73 24 chr15 40855285 40855491 -60525030 - MLT1B LTR MaLR -174 216 1 2028 118 0 38 chr15 40855701 40856016 -60524505 - AluSx SINE Alu -4 308 6 1905 154 16 7 chr15 40856273 40856578 -60523943 - AluJb SINE Alu -3 309 2 394 108 27 14 chr15 40856692 40856766 -60523755 + GA-rich Low_complexity Low_complexity 1 75 0 1043 132 0 0 chr15 40856890 40857034 -60523487 - AluSq/x SINE Alu -169 144 1 2145 133 56 3 chr15 40857043 40857420 -60523101 - L1MB4 LINE L1 0 6180 5784 2141 154 22 0 chr15 40857424 40857782 -60522739 - MER47A DNA MER2_type 0 366 1 1995 94 15 0 chr15 40858082 40858347 -60522174 - AluSq SINE Alu -22 291 23 403 254 61 6 chr15 40858509 40858674 -60521847 + MER65A LTR ERV1 272 445 0 215 260 0 0 chr15 40858680 40858719 -60521802 + A-rich Low_complexity Low_complexity 4 42 -38 1759 179 6 3 chr15 40858719 40859031 -60521490 + AluSp SINE Alu 1 313 0 215 260 0 0 chr15 40859031 40859068 -60521453 + A-rich Low_complexity Low_complexity 41 80 0 429 275 116 35 chr15 40859122 40859342 -60521179 + L1ME LINE L1 5239 5476 -686 5336 221 74 19 chr15 40859383 40860779 -60519742 - ERVL LTR ERVL -2615 3149 1678 438 115 11 46 chr15 40860782 40860869 -60519652 + MSTB2 LTR MaLR 1 84 -373 278 255 21 11 chr15 40860997 40861091 -60519430 - ERVL LTR ERVL -4892 872 778 263 292 34 11 chr15 40861166 40861255 -60519266 - ERVL LTR ERVL -5129 635 545 2201 101 0 3 chr15 40861291 40861587 -60518934 + AluY SINE Alu 3 297 -14 281 191 16 0 chr15 40861588 40861651 -60518870 - L1P LINE L1 -2379 3767 3704 1433 278 74 25 chr15 40861754 40862834 -60517687 - L1M4 LINE L1 -2901 3245 2113 1035 314 79 44 chr15 40862841 40863006 -60517515 - L1M4 LINE L1 -2971 3175 3017 2415 114 14 0 chr15 40863006 40863356 -60517165 + THE1A LTR MaLR 1 355 0 1035 314 79 44 chr15 40863356 40863676 -60516845 - L1M4 LINE L1 -3129 3017 2709 2107 118 3 0 chr15 40863676 40863964 -60516557 + AluSg SINE Alu 1 289 -21 1035 314 79 44 chr15 40863964 40864341 -60516180 - L1M4 LINE L1 -3437 2709 2271 2178 119 14 0 chr15 40864341 40864635 -60515886 - AluSq SINE Alu -15 298 1 1035 314 79 44 chr15 40864635 40864762 -60515759 - L1M4 LINE L1 -3875 2271 2150 22 35 0 0 chr15 40864805 40864834 -60515687 + AT_rich Low_complexity Low_complexity 1 29 0 595 103 0 0 chr15 40865298 40865376 -60515145 + AluS SINE Alu 1 78 -234 376 160 3 1 chr15 40865391 40865479 -60515042 + LOR1-int LTR ERV1 946 1312 -5446 1742 93 0 13 chr15 40866282 40866508 -60514013 - AluSg/x SINE Alu -16 294 72 702 244 89 26 chr15 40866508 40866762 -60513759 + L1M4 LINE L1 2814 3050 -3096 2392 100 0 0 chr15 40866762 40867072 -60513449 - AluSx SINE Alu -2 310 1 702 244 89 26 chr15 40867072 40867275 -60513246 + L1M4 LINE L1 3050 3300 -2846 402 201 92 55 chr15 40867517 40867681 -60512840 + L1MC5 LINE L1 7610 7779 -182 1219 119 0 0 chr15 40868387 40868555 -60511966 + AluSg/x SINE Alu 137 304 -8 33 25 0 0 chr15 40868556 40868596 -60511925 + AT_rich Low_complexity Low_complexity 1 40 0 278 318 47 0 chr15 40868706 40868835 -60511686 + L2 LINE L2 2252 2386 -928 409 212 93 42 chr15 40870030 40870148 -60510373 - L2 LINE L2 -1 3271 3148 719 127 0 63 chr15 40870216 40870342 -60510179 + AluJb SINE Alu 1 118 -194 22 56 0 0 chr15 40870342 40870378 -60510143 + AT_rich Low_complexity Low_complexity 1 36 0 2171 112 3 0 chr15 40870702 40870987 -60509534 - AluSx SINE Alu -26 286 1 339 122 12 98 chr15 40871592 40871674 -60508847 - MER33 DNA MER1_type -6 318 244 1043 164 0 6 chr15 40871678 40871843 -60508678 + FAM SINE Alu 2 165 -20 1168 137 47 9 chr15 40871859 40872093 -60508428 - MER33 DNA MER1_type -88 236 1 280 229 25 0 chr15 40872242 40872485 -60508036 + (TA)n Simple_repeat Simple_repeat 1 249 0 245 208 13 0 chr15 40872511 40872588 -60507933 + (TA)n Simple_repeat Simple_repeat 2 79 0 378 200 191 26 chr15 40872623 40872738 -60507783 - MER5A DNA MER1_type -21 168 35 2201 105 0 3 chr15 40873025 40873319 -60507202 - AluSx SINE Alu -18 294 2 2400 55 0 26 chr15 40873501 40873809 -60506712 - AluY SINE Alu -11 300 1 305 148 19 0 chr15 40873905 40873959 -60506562 + MER57A LTR ERV1 289 343 -60 329 173 37 12 chr15 40874069 40874150 -60506371 + L1MC4 LINE L1 6971 7053 -989 749 61 30 0 chr15 40874150 40874249 -60506272 + U6 snRNA snRNA 1 102 -5 228 163 0 0 chr15 40874278 40874321 -60506200 + GA-rich Low_complexity Low_complexity 3 45 0 762 265 33 19 chr15 40874322 40874835 -60505686 + L1MC4 LINE L1 7074 7629 -413 510 237 89 50 chr15 40874837 40875122 -60505399 + L1MC4 LINE L1 7691 7992 -50 2263 97 0 7 chr15 40875122 40875430 -60505091 - AluSc SINE Alu -3 306 1 510 237 89 50 chr15 40875430 40875481 -60505040 + L1MC4 LINE L1 7992 8040 -2 23 0 0 0 chr15 40875502 40875525 -60504996 + AT_rich Low_complexity Low_complexity 1 23 0 205 340 125 28 chr15 40875808 40875952 -60504569 - MIR3 SINE MIR -35 173 16 1995 169 0 3 chr15 40876201 40876514 -60504007 + AluSx SINE Alu 1 312 0 284 167 21 111 chr15 40876786 40876930 -60503591 + Charlie5 DNA MER1_type 2416 2546 -66 1255 164 14 18 chr15 40876934 40877153 -60503368 + AluJo SINE Alu 86 303 -9 1142 147 9 19 chr15 40877278 40877489 -60503032 - MER2 DNA MER2_type -136 209 1 1239 187 75 0 chr15 40877959 40878227 -60502294 + MLT1D LTR MaLR 218 505 0 198 294 0 0 chr15 40878227 40878278 -60502243 - MIR SINE MIR -35 227 177 1012 165 67 77 chr15 40878587 40878872 -60501649 - MLT1D LTR MaLR -223 282 1 579 201 97 0 chr15 40878913 40879057 -60501464 - MIR SINE MIR -42 220 63 200 333 108 0 chr15 40879188 40879299 -60501222 + L2 LINE L2 3181 3303 -10 348 304 47 20 chr15 40880685 40880833 -60499688 - MIR SINE MIR -55 207 56 1795 91 0 21 chr15 40880837 40881078 -60499443 + AluY SINE Alu 4 239 -72 529 167 0 12 chr15 40881178 40881262 -60499259 - AluJb SINE Alu -58 254 172 406 163 50 0 chr15 40881262 40881342 -60499179 + MER61E LTR ERV1 2 85 -484 227 104 104 0 chr15 40881362 40881410 -60499111 + LTR25 LTR ERV1 94 146 -648 * 618 157 9 0 chr15 40881399 40881507 -60499014 + LTR25 LTR ERV1 248 356 -438 308 241 8 47 chr15 40881510 40881638 -60498883 + MER61E LTR ERV1 75 189 -380 1155 141 45 5 chr15 40881687 40881886 -60498635 + MER61E LTR ERV1 341 547 -22 2134 157 19 11 chr15 40881919 40882295 -60498226 + MER61E-int LTR ERV1 29 407 -6589 1209 89 53 9 chr15 40882401 40882626 -60497895 - MER52-int LTR ERV1 -3347 4190 3956 636 179 86 0 chr15 40882617 40882734 -60497787 - MER52-int LTR ERV1 -2318 4773 4647 * 1630 225 28 18 chr15 40882731 40883166 -60497355 - MER52-int LTR ERV1 -5793 1203 765 206 159 14 43 chr15 40884085 40884154 -60496367 + T-rich Low_complexity Low_complexity 2 68 0 10535 136 24 32 chr15 40884254 40885754 -60494767 + MER61E-int LTR ERV1 2152 3662 -3334 2330 78 3 0 chr15 40885754 40886048 -60494473 + AluY SINE Alu 1 295 -16 10535 136 24 32 chr15 40886048 40886888 -60493633 + MER61E-int LTR ERV1 3662 6995 -1 428 169 0 119 chr15 40886890 40887008 -60493513 + MER61E LTR ERV1 1 104 -465 * 617 157 9 0 chr15 40886995 40887103 -60493418 + LTR25 LTR ERV1 248 356 -438 333 204 8 39 chr15 40887106 40887232 -60493289 + MER61E LTR ERV1 93 189 -380 431 105 9 114 chr15 40887285 40887390 -60493131 + MER61E LTR ERV1 341 434 -135 478 121 0 0 chr15 40887534 40887617 -60492904 + LTR25-int LTR ERV1 647 729 -6267 2438 90 3 0 chr15 40887651 40887961 -60492560 - AluY SINE Alu 0 311 1 381 291 7 33 chr15 40887982 40888133 -60492388 - LTR57-int LTR ERVL -3846 1497 1351 * 495 112 15 199 chr15 40888062 40888258 -60492263 - MER31-int LTR ERV1 -3250 1686 1527 10746 27 5 0 chr15 40888883 40890224 -60490297 - L1PA3 LINE L1 -1562 4584 3237 6844 26 0 0 chr15 40890224 40891671 -60488850 + L1PA3 LINE L1 4560 6006 -149 333 146 0 0 chr15 40891779 40891827 -60488694 - Alu SINE Alu -252 48 1 609 273 19 0 chr15 40892758 40892912 -60487609 + MIR SINE MIR 87 243 -19 1278 105 0 28 chr15 40893034 40893215 -60487306 + AluSg/x SINE Alu 137 312 0 247 203 0 17 chr15 40893661 40893720 -60486801 - L2 LINE L2 -13 3259 3202 240 314 51 8 chr15 40894189 40894307 -60486214 - MIR SINE MIR -71 191 69 2750 145 53 0 chr15 40895189 40895623 -60484898 + MSTB2 LTR MaLR 1 457 0 2006 135 24 3 chr15 40895750 40896047 -60484474 + AluSx SINE Alu 1 303 -9 197 264 57 0 chr15 40897146 40897199 -60483322 - MIR SINE MIR -66 142 87 295 313 57 12 chr15 40897492 40897738 -60482783 + L1ME4a LINE L1 5647 5903 -218 1309 171 34 42 chr15 40897925 40898164 -60482357 + AluJo SINE Alu 1 237 -75 423 231 39 58 chr15 40899523 40899679 -60480842 + MIR3 SINE MIR 30 182 -26 220 179 0 0 chr15 40902053 40902092 -60478429 + CT-rich Low_complexity Low_complexity 1 39 0 199 244 0 0 chr15 40904012 40904057 -60476464 + L2 LINE L2 3251 3295 -18 2285 71 0 14 chr15 40905222 40905518 -60475003 + AluY SINE Alu 20 311 0 180 0 0 0 chr15 40905844 40905864 -60474657 + (A)n Simple_repeat Simple_repeat 1 20 0 1228 105 139 38 chr15 40905992 40906201 -60474320 - MER30 DNA MER1_type 0 230 1 183 42 0 0 chr15 40906240 40906264 -60474257 + (CA)n Simple_repeat Simple_repeat 2 25 0 241 274 177 9 chr15 40906573 40906686 -60473835 + L2 LINE L2 3134 3265 -7 2288 101 7 0 chr15 40907345 40907633 -60472888 - AluSx SINE Alu -22 290 1 657 114 0 0 chr15 40908311 40908399 -60472122 + AluSg/x SINE Alu 209 296 -14 2078 130 31 3 chr15 40908449 40908742 -60471779 - AluSx SINE Alu -11 301 1 2033 141 3 3 chr15 40908785 40909075 -60471446 - AluJb SINE Alu -22 290 1 679 254 38 42 chr15 40909534 40909770 -60470751 - MIR SINE MIR -4 258 24 211 232 18 0 chr15 40910277 40910333 -60470188 - MIR SINE MIR -50 212 156 255 275 12 70 chr15 40910470 40910641 -60469880 + L1MB2 LINE L1 4673 4833 -1313 585 315 98 28 chr15 40910760 40911299 -60469222 + L1MB2 LINE L1 5352 5928 -243 1080 127 0 12 chr15 40911304 40911477 -60469044 - L1MA1 LINE L1 0 6302 6132 410 279 104 15 chr15 40911715 40911928 -60468593 - MIR SINE MIR -10 252 19 293 320 8 24 chr15 40912477 40912602 -60467919 + MLT1J2 LTR MaLR 19 141 -309 1505 240 63 11 chr15 40912652 40913031 -60467490 - MLT1H LTR MaLR 0 549 151 251 204 0 0 chr15 40913023 40913067 -60467454 + Charlie4 DNA MER1_type 1901 1944 -17 * 379 248 64 9 chr15 40914432 40914540 -60465981 - MIR SINE MIR -92 170 57 288 261 0 0 chr15 40914540 40914605 -60465916 + MER91B DNA MER1_type 1 65 -125 230 238 68 61 chr15 40914711 40914858 -60465663 + L1ME LINE L1 5678 5825 -296 618 299 104 24 chr15 40914947 40915275 -60465246 + ERVL LTR ERVL 4277 4630 -1134 1451 247 46 44 chr15 40915352 40915421 -60465100 + L1MDb LINE L1 9 76 -6333 7058 82 35 22 chr15 40915421 40916415 -60464106 - LTR13 LTR ERVK 0 1007 1 1451 247 46 44 chr15 40916415 40916823 -60463698 + L1MDb LINE L1 76 487 -5922 2312 97 0 7 chr15 40917859 40918159 -60462362 + AluY SINE Alu 1 298 -13 1540 288 107 26 chr15 40918236 40919274 -60461247 - L2 LINE L2 0 3313 2191 234 0 0 0 chr15 40920098 40920124 -60460397 + (CA)n Simple_repeat Simple_repeat 2 27 0 203 147 0 0 chr15 40920740 40920774 -60459747 + (CACAC)n Simple_repeat Simple_repeat 2 35 0 775 163 25 89 chr15 40921807 40922009 -60458512 + MER53 DNA DNA 1 189 0 247 294 130 0 chr15 40922136 40922228 -60458293 + MLT1J2 LTR MaLR 108 211 -338 2311 110 0 10 chr15 40922885 40923193 -60457328 - AluSp SINE Alu -8 305 1 448 251 114 75 chr15 40924517 40924802 -60455719 + L1ME4a LINE L1 5497 5800 -321 2381 76 7 3 chr15 40924802 40925103 -60455418 + AluY SINE Alu 1 302 -9 448 251 114 75 chr15 40925103 40925175 -60455346 + L1ME4a LINE L1 5800 5868 -253 211 369 72 38 chr15 40925396 40925632 -60454889 - L2 LINE L2 -4 3268 3025 202 259 0 0 chr15 40925665 40925719 -60454802 - L2 LINE L2 0 3272 3219 2163 76 11 4 chr15 40925719 40925996 -60454525 + AluY SINE Alu 31 309 -2 946 254 24 111 chr15 40926402 40926934 -60453587 - L2 LINE L2 -2 3311 2826 187 313 46 84 chr15 40926949 40927080 -60453441 + L2 LINE L2 3147 3272 0 2283 108 3 6 chr15 40927138 40927452 -60453069 + AluSq SINE Alu 1 313 0 306 148 0 0 chr15 40927517 40927571 -60452950 + (TGGA)n Simple_repeat Simple_repeat 3 56 0 325 311 175 23 chr15 40928955 40929132 -60451389 + MIR SINE MIR 47 250 -12 506 316 116 4 chr15 40929210 40929435 -60451086 + MIR SINE MIR 3 252 -10 212 254 34 0 chr15 40929924 40929983 -60450538 - MIR SINE MIR -154 108 48 249 108 0 0 chr15 40930056 40930093 -60450428 + (A)n Simple_repeat Simple_repeat 1 37 0 1258 230 202 3 chr15 40930628 40931019 -60449502 + LTR50 LTR ERVL 4 472 -323 486 191 9 38 chr15 40931109 40931214 -60449307 + LTR33A LTR ERVL 422 523 0 2348 84 0 3 chr15 40931515 40931847 -60448674 + AluY SINE Alu 1 311 0 1520 93 28 0 chr15 40931929 40932181 -60448340 + L1PA10 LINE L1 5949 6206 0 2302 41 7 17 chr15 40932218 40932509 -60448012 + L1PA4 LINE L1 5867 6154 -1 462 204 71 0 chr15 40932893 40932991 -60447530 + MER103 DNA DNA 13 117 -49 541 117 96 0 chr15 40933342 40933436 -60447085 + MER58 DNA MER1_type 2318 2420 0 706 194 15 112 chr15 40933778 40933974 -60446547 + MER63A DNA MER1_type 1 177 -33 1285 175 131 42 chr15 40934456 40934890 -60445631 + Charlie4a DNA MER1_type 34 506 -2 272 333 83 28 chr15 40934898 40935078 -60445443 - MIR SINE MIR -53 209 20 662 317 61 8 chr15 40935933 40936179 -60444342 - LTR16C LTR ERVL -3 488 230 691 179 152 7 chr15 40936277 40936428 -60444093 - MLT1B LTR MaLR -217 173 1 485 320 53 0 chr15 40937444 40937594 -60442927 + MER91A DNA MER1_type 20 177 -19 835 283 116 27 chr15 40937696 40938109 -60442412 + LTR16A LTR ERVL 1 450 0 2445 97 0 0 chr15 40938448 40938756 -60441765 + AluSg SINE Alu 1 308 -2 231 283 43 43 chr15 40939124 40939262 -60441259 + HAL1b LINE L1 754 891 -457 382 308 57 34 chr15 40939364 40939627 -60440894 + HAL1 LINE L1 2222 2490 -17 311 216 33 14 chr15 40939963 40940044 -60440477 + MIR SINE MIR 71 144 -64 313 333 0 0 chr15 40940278 40940374 -60440147 + MIR3 SINE MIR 81 176 -32 309 317 57 32 chr15 40941834 40941957 -60438564 - L2 LINE L2 -8 3305 3180 2462 52 3 0 chr15 40942080 40942385 -60438136 + AluY SINE Alu 1 306 -5 2037 146 27 29 chr15 40942545 40942921 -60437600 - THE1C LTR MaLR 0 375 1 267 311 34 0 chr15 40942921 40943040 -60437481 + LTR16A1 LTR ERVL 309 431 -26 181 281 0 62 chr15 40943046 40943110 -60437411 + MIR SINE MIR 92 151 -111 342 258 97 32 chr15 40943981 40944105 -60436416 - L1ME4a LINE L1 -14 6107 5976 410 304 0 37 chr15 40944841 40944976 -60435545 - MIR3 SINE MIR -1 207 78 204 296 0 19 chr15 40945291 40945345 -60435176 + MIR SINE MIR 114 166 -96 1211 201 134 108 chr15 40945566 40945977 -60434544 + MLT2B1 LTR ERVL 1 400 -120 2351 78 0 10 chr15 40945977 40946284 -60434237 - AluY SINE Alu -7 304 1 1211 201 134 108 chr15 40946284 40946307 -60434214 + MLT2B1 LTR ERVL 400 421 -99 345 62 0 0 chr15 40946307 40946355 -60434166 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 1211 201 134 108 chr15 40946355 40946426 -60434095 + MLT2B1 LTR ERVL 421 520 0 2942 170 32 4 chr15 40946967 40947460 -60433061 + L1P3 LINE L1 2 508 -5367 2415 46 0 13 chr15 40947467 40947770 -60432751 + AluY SINE Alu 1 299 -12 2162 220 90 13 chr15 40947782 40948459 -60432062 + L1M4 LINE L1 4107 4835 -1311 781 102 8 0 chr15 40948519 40948637 -60431884 - L1PA8 LINE L1 0 6172 6054 2200 70 30 7 chr15 40948652 40948952 -60431569 - AluY SINE Alu -4 307 1 666 267 20 0 chr15 40949889 40950039 -60430482 + MIR SINE MIR 93 245 -17 1129 116 0 29 chr15 40950162 40950334 -60430187 + AluSg/x SINE Alu 135 301 -9 276 203 0 17 chr15 40950782 40950841 -60429680 - L2 LINE L2 -13 3259 3202 193 281 105 0 chr15 40951165 40951222 -60429299 - MIR3 SINE MIR -21 187 125 287 314 51 8 chr15 40951310 40951428 -60429093 - MIR SINE MIR -71 191 69 2721 150 53 0 chr15 40952310 40952744 -60427777 + MSTB2 LTR MaLR 1 457 0 1872 138 20 3 chr15 40952871 40953167 -60427354 + AluSx SINE Alu 1 301 -11 204 283 57 0 chr15 40954276 40954329 -60426192 - MIR SINE MIR -66 142 87 323 276 44 82 chr15 40954525 40954844 -60425677 + L1ME4a LINE L1 5597 5903 -218 300 221 142 35 chr15 40954907 40955020 -60425501 + L1MC5 LINE L1 7467 7591 -370 1195 176 34 42 chr15 40955031 40955270 -60425251 + AluJo SINE Alu 1 237 -75 495 285 24 30 chr15 40956632 40956797 -60423724 + MIR3 SINE MIR 30 193 -15 220 179 0 0 chr15 40959136 40959175 -60421346 + CT-rich Low_complexity Low_complexity 1 39 0 2226 84 3 0 chr15 40959176 40959472 -60421049 - AluY SINE Alu -14 297 1 229 222 0 0 chr15 40961399 40961444 -60419077 + L2 LINE L2 3251 3295 -18 201 355 64 0 chr15 40961994 40962104 -60418417 + MIR SINE MIR 146 262 0 1227 105 139 38 chr15 40963065 40963274 -60417247 - MER30 DNA MER1_type 0 230 1 249 57 0 0 chr15 40963318 40963353 -60417168 + (CA)n Simple_repeat Simple_repeat 2 36 0 288 266 177 9 chr15 40963646 40963759 -60416762 + L2 LINE L2 3134 3265 -7 301 255 227 93 chr15 40964347 40964425 -60416096 + L1ME4a LINE L1 5795 5861 -260 2126 121 0 0 chr15 40964425 40964723 -60415798 - AluSx SINE Alu -14 298 1 301 255 227 93 chr15 40964723 40964860 -60415661 + L1ME4a LINE L1 5861 6039 -82 239 97 0 0 chr15 40965414 40965445 -60415076 + Alu SINE Alu 209 239 -61 2030 142 0 3 chr15 40965507 40965816 -60414705 - AluSx SINE Alu -3 309 2 1948 137 3 3 chr15 40965857 40966150 -60414371 - AluJb SINE Alu -19 293 1 849 233 38 42 chr15 40966604 40966844 -60413677 - MIR SINE MIR 0 262 24 2145 88 0 3 chr15 40966976 40967299 -60413222 - AluY SINE Alu 0 322 1 351 271 28 94 chr15 40967686 40967867 -60412654 - MIR SINE MIR -60 202 34 810 246 22 6 chr15 40969155 40969338 -60411183 - MIR SINE MIR -12 250 65 317 258 0 43 chr15 40969929 40970022 -60410499 + MIR SINE MIR 148 236 -26 306 286 29 38 chr15 40970059 40970164 -60410357 - MIR SINE MIR -121 141 38 306 253 25 139 chr15 40971458 40971703 -60408818 - L1MC4 LINE L1 0 8042 7826 965 201 4 64 chr15 40971764 40972013 -60408508 - L1ME2 LINE L1 -100 6064 5831 800 128 0 60 chr15 40972020 40972153 -60408368 + FLAM_C SINE Alu 1 125 -18 1420 194 20 31 chr15 40972168 40972462 -60408059 + AluJo SINE Alu 1 291 -21 280 186 14 43 chr15 40972543 40972613 -60407908 - L1ME2 LINE L1 -371 5793 5726 891 129 0 7 chr15 40972656 40972796 -60407725 - AluJb SINE Alu -2 310 172 396 235 67 27 chr15 40972796 40972945 -60407576 + MER61E LTR ERV1 2 156 -413 * 681 157 9 0 chr15 40972933 40973041 -60407480 + LTR25 LTR ERV1 248 356 -438 375 191 31 71 chr15 40973044 40973172 -60407349 + MER61E LTR ERV1 75 189 -380 1214 146 45 5 chr15 40973221 40973420 -60407101 + MER61E LTR ERV1 341 547 -22 1028 171 0 17 chr15 40973436 40973611 -60406910 - AluJb SINE Alu -136 176 5 261 344 104 0 chr15 40974456 40974581 -60405940 - MIR SINE MIR -12 250 113 188 151 0 151 chr15 40974763 40974816 -60405705 + MIR SINE MIR 204 248 -14 794 99 0 0 chr15 40974828 40974939 -60405582 + HY1 scRNA scRNA 1 111 -1 2128 129 0 0 chr15 40974999 40975308 -60405213 - AluSx SINE Alu -3 309 1 1989 125 0 10 chr15 40975499 40975796 -60404725 + AluSx SINE Alu 1 294 -18 1890 159 10 0 chr15 40976022 40976323 -60404198 - AluJo SINE Alu -8 304 1 1845 134 16 39 chr15 40976475 40976781 -60403740 - AluSx SINE Alu -13 299 1 604 269 94 34 chr15 40976867 40977042 -60403479 + MIR SINE MIR 7 201 -61 1829 165 3 0 chr15 40977042 40977351 -60403170 + AluSx SINE Alu 3 312 0 604 269 94 34 chr15 40977351 40977409 -60403112 + MIR SINE MIR 201 254 -8 413 329 72 66 chr15 40978269 40978588 -60401933 + L2 LINE L2 2947 3267 -5 1399 143 127 4 chr15 40978970 40979214 -60401307 + MLT2C2 LTR ERVL 1 274 -190 198 103 0 0 chr15 40979223 40979252 -60401269 + (CATA)n Simple_repeat Simple_repeat 4 32 0 245 171 0 0 chr15 40979252 40979293 -60401228 + MLT2B2 LTR ERVL 475 515 0 2186 113 0 0 chr15 40979492 40979803 -60400718 - AluSx SINE Alu -1 311 1 237 108 0 0 chr15 40982418 40982455 -60398066 + (TAG)n Simple_repeat Simple_repeat 1 37 0 2247 99 3 0 chr15 40982589 40982892 -60397629 + AluSx SINE Alu 3 306 -6 215 239 43 0 chr15 40982911 40982957 -60397564 - L2 LINE L2 -15 3257 3210 235 329 27 0 chr15 40982972 40983045 -60397476 - MIR SINE MIR -118 144 70 538 263 158 11 chr15 40983577 40983767 -60396754 - MIR SINE MIR -5 257 40 348 111 0 0 chr15 40983830 40983884 -60396637 + (GGAA)n Simple_repeat Simple_repeat 1 54 0 2870 79 3 0 chr15 40984013 40984392 -60396129 - L1PA8 LINE L1 0 6172 5793 329 57 0 19 chr15 40985251 40985304 -60395217 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 1642 121 0 37 chr15 40985344 40985616 -60394905 - AluJb SINE Alu -50 262 1 365 298 65 0 chr15 40986097 40986221 -60394300 + MIR SINE MIR 22 153 -109 2440 138 48 71 chr15 40986358 40986880 -60393641 + LTR54 LTR ERV1 1 510 0 1199 176 96 58 chr15 40986908 40987221 -60393300 - MER2 DNA MER2_type -20 325 1 190 298 18 0 chr15 40987955 40988012 -60392509 - L2 LINE L2 -958 2356 2299 1644 213 45 26 chr15 40988091 40988518 -60392003 - L1MB2 LINE L1 -8 6163 5729 773 148 0 8 chr15 40988664 40988786 -60391735 + FLAM_C SINE Alu 1 121 -12 22 0 0 0 chr15 40988786 40988808 -60391713 + AT_rich Low_complexity Low_complexity 1 22 0 832 199 60 12 chr15 40989079 40989245 -60391276 - AluJo SINE Alu -15 297 124 413 329 72 66 chr15 40989576 40989895 -60390626 + L2 LINE L2 2947 3267 -5 1432 135 127 4 chr15 40990277 40990521 -60390000 + MLT2C2 LTR ERVL 1 274 -190 198 103 0 0 chr15 40990530 40990559 -60389962 + (CATA)n Simple_repeat Simple_repeat 4 32 0 245 171 0 0 chr15 40990559 40990600 -60389921 + MLT2B1 LTR ERVL 480 520 0 302 0 26 0 chr15 40990812 40990850 -60389671 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2057 100 0 0 chr15 40990852 40991133 -60389388 - AluSx SINE Alu -31 281 1 237 108 0 0 chr15 40993750 40993787 -60386734 + (TAG)n Simple_repeat Simple_repeat 1 37 0 2201 110 3 0 chr15 40993917 40994207 -60386314 + AluSx SINE Alu 3 293 -19 200 309 29 0 chr15 40994290 40994358 -60386163 - MIR SINE MIR -123 139 70 439 264 138 11 chr15 40994895 40995069 -60385452 - MIR SINE MIR -5 257 62 569 39 0 13 chr15 40995147 40995224 -60385297 + (GGAA)n Simple_repeat Simple_repeat 2 77 0 2925 69 3 0 chr15 40995353 40995729 -60384792 - L1PA8 LINE L1 -3 6169 5793 1712 140 0 37 chr15 40996649 40996921 -60383600 - AluSx SINE Alu -50 262 1 4589 124 64 61 chr15 40997064 40998686 -60381835 - pTR5 LTR ERV1 -10 2428 65 313 298 65 0 chr15 40999020 40999144 -60381377 + MIR SINE MIR 22 153 -109 2507 134 48 71 chr15 40999281 40999803 -60380718 + LTR54 LTR ERV1 1 510 0 1210 176 96 58 chr15 40999831 41000144 -60380377 - MER2 DNA MER2_type -20 325 1 1793 212 53 5 chr15 41001015 41001430 -60379091 - L1MB2 LINE L1 -8 6163 5729 757 142 17 0 chr15 41001577 41001697 -60378824 + AluJb SINE Alu 2 123 -189 22 0 0 0 chr15 41001697 41001719 -60378802 + AT_rich Low_complexity Low_complexity 1 22 0 1626 164 63 7 chr15 41001993 41002279 -60378242 - AluJo SINE Alu 0 312 11 200 196 22 120 chr15 41002474 41002566 -60377955 + L2 LINE L2 3018 3100 -172 4971 151 155 1 chr15 41003111 41003995 -60376526 + LTR28 LTR ERV1 1 1020 0 202 81 27 0 chr15 41004944 41004981 -60375540 + MER5C DNA MER1_type 76 113 -211 2129 125 3 7 chr15 41004984 41005289 -60375232 - AluSx SINE Alu -8 304 1 225 293 120 0 chr15 41005331 41005406 -60375115 + MER5C DNA MER1_type 241 324 0 385 290 124 27 chr15 41005850 41006036 -60374485 - MIR SINE MIR -32 230 27 271 246 285 23 chr15 41007420 41007550 -60372971 - MER20B DNA MER1_type -595 188 25 1837 156 45 0 chr15 41007688 41007977 -60372544 - AluSx SINE Alu -10 302 1 307 206 191 64 chr15 41008484 41008625 -60371896 + L2 LINE L2 3109 3267 -5 234 326 0 32 chr15 41008760 41008855 -60371666 + MIR3 SINE MIR 15 106 -102 192 40 0 0 chr15 41010333 41010358 -60370163 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1983 47 51 4 chr15 41010358 41010606 -60369915 - AluY SINE Alu -48 263 1 240 250 61 104 chr15 41010694 41010858 -60369663 - MER5A DNA MER1_type -5 184 28 2142 105 7 7 chr15 41011017 41011313 -60369208 + AluSq SINE Alu 1 296 -17 2043 150 9 41 chr15 41011546 41011887 -60368634 - LTR8 LTR ERV1 0 691 362 1442 137 0 0 chr15 41011904 41012109 -60368412 - HERV9 LTR ERV1 -4521 3878 3674 38042 82 13 20 chr15 41012115 41017054 -60363467 + L1PA6 LINE L1 11 4902 -1252 2265 100 0 3 chr15 41017054 41017377 -60363144 + AluY SINE Alu 1 311 0 38042 82 13 20 chr15 41017377 41018622 -60361899 + L1PA6 LINE L1 4902 6154 0 18802 160 32 34 chr15 41018622 41020417 -60360104 - HERV9 LTR ERV1 -4711 3688 1892 2280 87 0 0 chr15 41020417 41020694 -60359827 + AluY SINE Alu 9 285 -26 18802 160 32 34 chr15 41020694 41022540 -60357981 - HERV9 LTR ERV1 -6507 1892 52 710 158 18 0 chr15 41022546 41022678 -60357843 - pTR5 LTR ERV1 -218 496 45 248 267 27 0 chr15 41022678 41022753 -60357768 - LTR30 LTR ERV1 -102 620 544 1086 174 25 87 chr15 41022757 41023033 -60357488 - LTR12 LTR ERV1 -440 274 16 2033 132 10 0 chr15 41023033 41023328 -60357193 + AluSx SINE Alu 13 310 -2 946 115 0 0 chr15 41023328 41023458 -60357063 - LTR8 LTR ERV1 -561 130 1 6602 155 44 10 chr15 41023458 41024272 -60356249 - HUERS-P1 LTR ERV1 0 6263 5478 1987 174 0 0 chr15 41024272 41024582 -60355939 - AluJb SINE Alu -2 310 1 6602 155 44 10 chr15 41024582 41024967 -60355554 - HUERS-P1 LTR ERV1 -785 5478 3577 18045 139 34 47 chr15 41024970 41028347 -60352174 - HUERS-P1 LTR ERV1 -2931 3332 1 4453 116 14 59 chr15 41028347 41029071 -60351450 - LTR8 LTR ERV1 0 691 1 213 65 0 0 chr15 41029341 41029372 -60351149 + (TG)n Simple_repeat Simple_repeat 1 31 0 386 103 0 17 chr15 41030308 41030366 -60350155 + U1 snRNA snRNA 5 61 -104 667 95 0 0 chr15 41030467 41030551 -60349970 + U1 snRNA snRNA 82 165 0 24 0 0 0 chr15 41030583 41030607 -60349914 + AT_rich Low_complexity Low_complexity 1 24 0 805 271 57 19 chr15 41031162 41031476 -60349045 - L2 LINE L2 -661 2653 2328 2465 114 13 84 chr15 41031477 41031942 -60348579 - MSTB1 LTR MaLR 0 432 1 7922 194 56 13 chr15 41031942 41033118 -60347403 - MSTB1-int LTR MaLR 0 1651 387 2527 49 3 16 chr15 41033118 41033425 -60347096 + AluY SINE Alu 1 303 -8 7922 194 56 13 chr15 41033425 41033830 -60346691 - MSTB1-int LTR MaLR -1264 387 1 2722 116 18 34 chr15 41033830 41034269 -60346252 - MSTB1 LTR MaLR 0 432 1 531 273 158 43 chr15 41034269 41034712 -60345809 - L2 LINE L2 -983 2331 1838 330 325 81 62 chr15 41034719 41035138 -60345383 - L2 LINE L2 0 3272 2846 1423 138 0 96 chr15 41035862 41036122 -60344399 + AluSx SINE Alu 1 235 -77 255 103 0 0 chr15 41036124 41036163 -60344358 + (GA)n Simple_repeat Simple_repeat 1 39 0 387 260 37 24 chr15 41036288 41036434 -60344087 + HAL1b LINE L1 521 1742 -701 21 57 0 0 chr15 41036665 41036700 -60343821 + AT_rich Low_complexity Low_complexity 1 35 0 800 145 0 69 chr15 41036764 41036909 -60343612 + AluJo SINE Alu 1 135 -177 30621 74 4 58 chr15 41037079 41042270 -60338251 - L1PA6 LINE L1 -1 6153 1029 716 172 23 0 chr15 41042677 41042805 -60337716 + AluJb SINE Alu 3 133 -179 747 234 0 6 chr15 41042809 41042984 -60337537 + L1M4 LINE L1 3609 3782 -2364 650 153 17 8 chr15 41043126 41043244 -60337277 + AluSg/x SINE Alu 174 292 -18 456 299 7 19 chr15 41043319 41043473 -60337048 - L1MEc LINE L1 -5866 530 379 589 193 25 0 chr15 41043479 41043598 -60336923 - L1MEc LINE L1 -6175 221 100 628 321 46 51 chr15 41044097 41044466 -60336055 - ERVL LTR ERVL -24 5740 5374 2189 107 0 20 chr15 41044466 41044765 -60335756 - AluSg SINE Alu -17 293 1 628 321 46 51 chr15 41044765 41045008 -60335513 - ERVL LTR ERVL -390 5374 5131 * 1079 245 52 10 chr15 41044998 41045304 -60335217 - ERVL LTR ERVL -1336 4428 4110 627 214 103 0 chr15 41045310 41045455 -60335066 - LTR33 LTR ERVL -357 164 5 241 229 0 33 chr15 41045733 41045794 -60334727 + L2 LINE L2 3254 3312 -1 495 189 95 61 chr15 41046112 41046179 -60334342 + MIR3 SINE MIR 17 80 -128 1052 234 83 61 chr15 41046179 41046636 -60333885 - MLT1C LTR MaLR 0 467 1 495 189 95 61 chr15 41046636 41046716 -60333805 + MIR3 SINE MIR 80 169 -39 1396 201 37 48 chr15 41048515 41048893 -60331628 - MLT1A2 LTR MaLR 0 374 1 2503 86 3 0 chr15 41049032 41049336 -60331185 + AluSg SINE Alu 1 305 -5 5076 79 20 14 chr15 41049427 41050189 -60330332 - MER4E LTR ERV1 0 766 1 1475 180 39 3 chr15 41050199 41050483 -60330038 - AluJo SINE Alu -18 294 1 3075 135 65 2 chr15 41050719 41051215 -60329306 + MER1A DNA MER1_type 1 527 0 2336 118 0 6 chr15 41051280 41051594 -60328927 - AluSx SINE Alu 0 312 1 233 296 120 9 chr15 41051836 41051944 -60328577 - MIR SINE MIR -133 129 10 202 125 42 21 chr15 41052274 41052322 -60328199 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 1108 227 84 28 chr15 41052362 41052683 -60327838 - MER2 DNA MER2_type 0 345 7 359 251 87 54 chr15 41052785 41052981 -60327540 - L1MC/D LINE L1 -327 5794 5606 267 241 86 35 chr15 41053315 41053431 -60327090 - L1ME4a LINE L1 -9 6112 5991 2123 142 0 3 chr15 41053623 41053934 -60326587 - AluSx SINE Alu -2 310 1 1729 184 14 0 chr15 41054013 41054301 -60326220 - AluJo SINE Alu -20 292 1 406 230 175 8 chr15 41054327 41054453 -60326068 - L1ME4a LINE L1 0 6121 5975 379 243 93 0 chr15 41054458 41054565 -60325956 - L1ME4a LINE L1 -435 5686 5570 335 193 72 72 chr15 41054586 41054669 -60325852 - L1ME4a LINE L1 -298 5823 5741 180 318 16 0 chr15 41055125 41055188 -60325333 + L2 LINE L2 2996 3059 -213 273 359 31 8 chr15 41055240 41055368 -60325153 - L2 LINE L2 -4 3268 3138 617 273 107 9 chr15 41055611 41055827 -60324694 + MIR SINE MIR 20 256 -6 393 357 6 20 chr15 41055925 41055954 -60324567 - MIR3 SINE MIR -22 186 158 1952 113 6 91 chr15 41055954 41056283 -60324238 - AluSx SINE Alu -11 301 1 393 357 6 20 chr15 41056283 41056422 -60324099 - MIR3 SINE MIR -50 158 20 199 204 45 0 chr15 41056912 41056956 -60323565 - MIR SINE MIR -26 236 191 659 266 90 70 chr15 41056988 41057056 -60323465 + MIR SINE MIR 1 66 -196 1485 167 46 4 chr15 41057056 41057296 -60323225 + AluJo SINE Alu 47 296 -16 659 266 90 70 chr15 41057296 41057483 -60323038 + MIR SINE MIR 66 261 -1 275 241 232 54 chr15 41057491 41057732 -60322789 + L2 LINE L2 3026 3309 -4 * 542 271 124 0 chr15 41057727 41057904 -60322617 - MIR SINE MIR -62 200 2 3112 109 43 0 chr15 41057935 41058441 -60322080 + L1MA2 LINE L1 5676 6203 -101 401 286 71 8 chr15 41059956 41060082 -60320439 - MIR3 SINE MIR -65 143 10 1848 199 76 32 chr15 41060214 41060677 -60319844 + L1ME2 LINE L1 5617 6099 -65 645 161 9 9 chr15 41060785 41060897 -60319624 + MER81 DNA DNA 1 112 -2 1088 237 128 21 chr15 41064048 41064470 -60316051 + MER113 DNA MER1_type? 55 521 0 547 221 41 0 chr15 41065944 41066066 -60314455 + L2 LINE L2 3187 3313 0 1994 163 0 3 chr15 41066329 41066635 -60313886 - AluJo SINE Alu -7 305 1 2674 46 0 0 chr15 41066637 41066941 -60313580 - AluY SINE Alu -7 304 1 329 356 56 6 chr15 41069130 41069290 -60311231 - MER91A DNA MER1_type -26 170 3 314 329 29 21 chr15 41069693 41069833 -60310688 + L3 LINE CR1 627 767 -810 2283 96 7 7 chr15 41070332 41070642 -60309879 + AluSx SINE Alu 3 312 0 204 266 165 13 chr15 41070936 41071015 -60309506 - L2 LINE L2 -18 3295 3205 2509 88 0 0 chr15 41072444 41072751 -60307770 - AluSx SINE Alu -5 307 1 688 223 4 96 chr15 41072751 41072815 -60307706 - MIR SINE MIR -10 252 184 786 174 73 17 chr15 41072815 41072993 -60307528 - MER5A DNA MER1_type 0 189 2 688 223 4 96 chr15 41072993 41073169 -60307352 - MIR SINE MIR -78 184 33 2339 113 0 22 chr15 41075193 41075550 -60304971 + AluSx SINE Alu 1 350 0 400 289 255 0 chr15 41076202 41076410 -60304111 + MIR SINE MIR 1 261 -1 273 283 114 66 chr15 41079670 41079836 -60300685 + MIR SINE MIR 31 204 -58 337 327 27 0 chr15 41085027 41085137 -60295384 - MIR SINE MIR -56 206 94 639 92 61 0 chr15 41085221 41085319 -60295202 + FLAM_C SINE Alu 17 120 -23 198 349 165 0 chr15 41086161 41086270 -60294251 - MIR SINE MIR -63 145 19 188 290 150 10 chr15 41087115 41087215 -60293306 - MIR SINE MIR -79 129 16 204 125 0 0 chr15 41087224 41087256 -60293265 + (GA)n Simple_repeat Simple_repeat 1 32 0 210 303 15 0 chr15 41088939 41089005 -60291516 + L2 LINE L2 3175 3241 -31 2237 100 0 7 chr15 41089163 41089454 -60291067 - AluSx SINE Alu -23 289 1 1542 173 61 4 chr15 41090046 41090323 -60290198 - AluJo SINE Alu -15 297 5 440 284 9 0 chr15 41090692 41090801 -60289720 - L2 LINE L2 -11 3302 3193 543 249 17 35 chr15 41091539 41091712 -60288809 - MER104 DNA Tc2 -3 177 8 394 293 137 34 chr15 41091819 41092024 -60288497 + MIR SINE MIR 19 244 -18 2008 137 0 11 chr15 41092146 41092450 -60288071 - AluSx SINE Alu 0 301 1 255 292 143 19 chr15 41092467 41092628 -60287893 + MIR3 SINE MIR 21 201 -7 1061 302 126 30 chr15 41092865 41093728 -60286793 + L2 LINE L2 1527 2472 -842 499 332 76 54 chr15 41093846 41094295 -60286226 + L2 LINE L2 2752 3209 -63 23 0 0 0 chr15 41094646 41094669 -60285852 + AT_rich Low_complexity Low_complexity 1 23 0 221 227 0 0 chr15 41096202 41096246 -60284275 + (TG)n Simple_repeat Simple_repeat 2 45 0 374 344 8 8 chr15 41099110 41099241 -60281280 - MIR3 SINE MIR -74 134 4 413 234 8 62 chr15 41099278 41099406 -60281115 + L2 LINE L2 3192 3312 -1 235 302 69 52 chr15 41099713 41099829 -60280692 + L2 LINE L2 3155 3272 0 2249 87 0 37 chr15 41104703 41105024 -60275497 + AluSp SINE Alu 1 309 -4 318 235 62 12 chr15 41105232 41105313 -60275208 - L1MC4 LINE L1 -1342 6700 6616 459 100 0 0 chr15 41105682 41105752 -60274769 + (TG)n Simple_repeat Simple_repeat 1 70 0 530 298 30 18 chr15 41106262 41106430 -60274091 - MIR3 SINE MIR -1 207 38 209 296 19 0 chr15 41107449 41107503 -60273018 - L2 LINE L2 -8 3305 3251 1085 284 28 22 chr15 41107784 41108242 -60272279 + Tigger8 DNA MER2_type 158 618 -48 289 279 0 13 chr15 41108349 41108428 -60272093 + MIR SINE MIR 185 262 0 288 0 0 0 chr15 41109393 41109425 -60271096 + (TG)n Simple_repeat Simple_repeat 2 33 0 2254 98 10 0 chr15 41110089 41110395 -60270126 + AluSp SINE Alu 5 313 0 408 88 0 0 chr15 41110396 41110453 -60270068 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 799 264 63 17 chr15 41111260 41111499 -60269022 + MIR SINE MIR 13 262 0 272 325 39 26 chr15 41112356 41112510 -60268011 + MIR SINE MIR 79 234 -28 2322 95 3 0 chr15 41113275 41113579 -60266942 + AluSx SINE Alu 1 305 -7 476 281 53 12 chr15 41114161 41114356 -60266165 - MIR3 SINE MIR -46 216 5 1074 162 83 45 chr15 41116107 41116372 -60264149 - ORSL DNA AcHobo 0 275 1 197 129 0 0 chr15 41116596 41116627 -60263894 + L2 LINE L2 3241 3271 -1 318 281 98 52 chr15 41117166 41117208 -60263313 - L1MC4 LINE L1 -2 8040 8001 1891 138 17 10 chr15 41117208 41117499 -60263022 + AluSx SINE Alu 1 293 -19 318 281 98 52 chr15 41117499 41117609 -60262912 - L1MC4 LINE L1 -41 8001 7881 250 236 45 11 chr15 41117817 41117906 -60262615 - L1MC5 LINE L1 -34 7927 7836 667 253 78 0 chr15 41118416 41118570 -60261951 - MER91A DNA MER1_type 0 196 31 451 258 70 128 chr15 41118925 41119254 -60261267 - L2 LINE L2 0 3272 2963 2388 84 3 0 chr15 41120581 41120889 -60259632 + AluSx SINE Alu 1 309 -3 477 0 0 0 chr15 41121136 41121189 -60259332 + (TG)n Simple_repeat Simple_repeat 2 54 0 1238 121 0 0 chr15 41121378 41121552 -60258969 + AluSg/x SINE Alu 133 306 -6 21 0 0 0 chr15 41122237 41122258 -60258263 + AT_rich Low_complexity Low_complexity 1 21 0 368 351 26 16 chr15 41122760 41122926 -60257595 - L2 LINE L2 0 3313 3143 2124 121 0 16 chr15 41122926 41123233 -60257288 + AluSx SINE Alu 1 302 -10 368 351 26 16 chr15 41123233 41123257 -60257264 - L2 LINE L2 -170 3143 3121 2351 87 0 0 chr15 41124075 41124374 -60256147 - AluSg SINE Alu -11 299 1 2038 151 3 0 chr15 41125181 41125492 -60255029 + AluSx SINE Alu 1 312 0 225 302 103 9 chr15 41125926 41126042 -60254479 + L3b LINE CR1 1111 1237 -346 2140 96 30 3 chr15 41126071 41126372 -60254149 + AluSx SINE Alu 1 309 -3 579 305 180 6 chr15 41127380 41127516 -60253005 - L2 LINE L2 -16 3297 3186 2040 120 10 17 chr15 41127516 41127816 -60252705 + AluSx SINE Alu 1 298 -14 579 305 180 6 chr15 41127816 41128040 -60252481 - L2 LINE L2 -127 3186 2874 388 331 37 37 chr15 41128074 41128319 -60252202 - L2 LINE L2 -550 2764 2520 2261 87 6 22 chr15 41128775 41129087 -60251434 + AluSc SINE Alu 1 307 -2 284 118 0 20 chr15 41129087 41129138 -60251383 + (GGGA)n Simple_repeat Simple_repeat 2 51 0 1138 178 17 26 chr15 41132112 41132342 -60248179 - AluJo SINE Alu -9 303 76 272 197 182 0 chr15 41133673 41133739 -60246782 + MIR3 SINE MIR 93 170 -38 2364 45 10 3 chr15 41133790 41134081 -60246440 - AluSp SINE Alu -19 294 2 41 66 0 0 chr15 41134739 41134815 -60245706 + GC_rich Low_complexity Low_complexity 1 76 0 336 304 32 8 chr15 41137824 41137949 -60242572 + MIR SINE MIR 20 147 -115 523 294 71 5 chr15 41138109 41138284 -60242237 - MIR3 SINE MIR -7 201 12 2175 123 0 3 chr15 41138284 41138593 -60241928 - AluSq SINE Alu -1 312 5 454 205 224 32 chr15 41139148 41139304 -60241217 - MIR SINE MIR 0 262 77 289 273 52 0 chr15 41139339 41139416 -60241105 + L2 LINE L2 3138 3218 -54 252 168 42 76 chr15 41141382 41141501 -60239020 + (CAGAGA)n Simple_repeat Simple_repeat 3 117 0 2307 96 3 6 chr15 41143452 41143765 -60236756 - AluSx SINE Alu 0 312 1 2345 84 0 3 chr15 41146168 41146478 -60234043 - AluSc SINE Alu 0 309 1 465 244 59 0 chr15 41146574 41146709 -60233812 - LTR33A LTR ERVL -6 517 375 446 246 85 15 chr15 41146813 41146943 -60233578 - MIR SINE MIR -78 184 46 233 209 179 0 chr15 41147798 41147865 -60232656 + L2 LINE L2 3220 3298 -15 399 282 132 48 chr15 41148249 41148476 -60232045 + L2 LINE L2 2946 3191 -81 272 257 43 0 chr15 41149181 41149251 -60231270 + L2 LINE L2 3225 3297 -16 194 0 39 0 chr15 41149491 41149517 -60231004 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 507 237 46 53 chr15 41149962 41150114 -60230407 + MIR SINE MIR 106 256 -6 275 337 32 0 chr15 41150140 41150235 -60230286 - MIR SINE MIR -83 125 28 460 191 106 14 chr15 41150248 41150389 -60230132 - MER103 DNA DNA -10 156 3 249 264 14 28 chr15 41150759 41150831 -60229690 - L2 LINE L2 -2 3311 3241 709 303 10 15 chr15 41150843 41151041 -60229480 + MIR SINE MIR 65 261 -1 333 294 101 0 chr15 41153493 41153602 -60226919 - L2 LINE L2 -7 3265 3146 222 260 0 0 chr15 41154608 41154658 -60225863 + GA-rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr15 41155142 41155164 -60225357 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr15 41155323 41155351 -60225170 + GC_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr15 41155406 41155427 -60225094 + GC_rich Low_complexity Low_complexity 1 21 0 32 57 0 0 chr15 41155481 41155534 -60224987 + GC_rich Low_complexity Low_complexity 1 53 0 231 88 0 0 chr15 41155638 41155672 -60224849 + (CGGGGG)n Simple_repeat Simple_repeat 2 35 0 2362 71 0 3 chr15 41156556 41156867 -60223654 + AluY SINE Alu 1 310 -1 830 203 0 51 chr15 41157387 41157564 -60222957 - FRAM SINE Alu -1 175 8 312 292 8 17 chr15 41157601 41157684 -60222837 + CT-rich Low_complexity Low_complexity 2 85 -35 2311 100 0 0 chr15 41157684 41157995 -60222526 - AluSq SINE Alu -2 311 1 312 292 8 17 chr15 41157995 41158031 -60222490 + CT-rich Low_complexity Low_complexity 85 120 0 207 345 0 0 chr15 41158630 41158688 -60221833 + MIR SINE MIR 87 144 -118 308 102 17 0 chr15 41158913 41158972 -60221549 + L1PA16 LINE L1 6107 6166 0 1764 124 3 109 chr15 41159252 41159437 -60221084 - AluJo SINE Alu -14 288 150 1740 170 14 0 chr15 41159437 41159726 -60220795 + AluSx SINE Alu 1 293 -19 1764 124 3 109 chr15 41159726 41159862 -60220659 - AluJo SINE Alu -152 150 1 630 259 80 24 chr15 41159877 41160089 -60220432 - MIR SINE MIR 0 262 39 2132 104 14 0 chr15 41160881 41161178 -60219343 + AluSx SINE Alu 1 301 -11 381 234 0 11 chr15 41161181 41161275 -60219246 - Charlie8 DNA MER1_type -2280 137 45 403 143 29 14 chr15 41161617 41161687 -60218834 + MER66A LTR ERV1 280 350 -128 23 0 0 0 chr15 41161687 41161710 -60218811 + AT_rich Low_complexity Low_complexity 1 23 0 219 324 80 6 chr15 41161720 41161896 -60218625 - L2 LINE L2 -1241 2073 1885 328 305 30 8 chr15 41161904 41162035 -60218486 + L1ME LINE L1 5568 5701 -420 1678 167 3 10 chr15 41162144 41162438 -60218083 + AluJb SINE Alu 1 292 -20 777 210 19 0 chr15 41162462 41162624 -60217897 + L1MC4 LINE L1 6784 6948 -1094 2221 104 0 0 chr15 41162624 41162931 -60217590 + AluSx SINE Alu 1 307 -5 22 65 0 0 chr15 41162957 41162988 -60217533 + AT_rich Low_complexity Low_complexity 1 31 0 39 24 0 0 chr15 41163003 41163044 -60217477 + AT_rich Low_complexity Low_complexity 1 41 0 955 179 0 0 chr15 41163187 41163388 -60217133 + AluSp SINE Alu 141 313 0 2573 73 0 3 chr15 41163602 41163932 -60216589 + MER41A LTR ERV1 1 329 -225 936 115 0 7 chr15 41163933 41164072 -60216449 + AluSq/x SINE Alu 2 139 -174 1852 79 4 0 chr15 41164117 41164357 -60216164 + MER41A LTR ERV1 314 554 0 412 324 29 22 chr15 41164772 41164911 -60215610 + MIR SINE MIR 1 140 -122 322 111 0 0 chr15 41164914 41164959 -60215562 + MER4D LTR ERV1 782 826 -77 1076 252 4 46 chr15 41164989 41165251 -60215270 - MIR SINE MIR 0 262 12 244 316 13 0 chr15 41165249 41165325 -60215196 + MIR SINE MIR 156 232 -30 * 2019 118 3 19 chr15 41165364 41165539 -60214982 - AluSx SINE Alu -3 309 140 2127 116 0 0 chr15 41165539 41165840 -60214681 - AluSg SINE Alu -9 301 1 2019 118 3 19 chr15 41165840 41165978 -60214543 - AluSx SINE Alu -172 140 1 803 103 7 97 chr15 41166187 41166332 -60214189 + FLAM_C SINE Alu 1 132 -1 2483 194 88 11 chr15 41166675 41167200 -60213321 - MLT1F1 LTR MaLR -2 565 1 2369 52 0 0 chr15 41167906 41168197 -60212324 + AluY SINE Alu 1 291 -20 1941 143 0 13 chr15 41168448 41168584 -60211937 + AluSx SINE Alu 1 137 -175 2105 98 0 3 chr15 41168584 41168913 -60211608 + AluSq SINE Alu 1 313 0 1941 143 0 13 chr15 41168913 41169083 -60211438 + AluSx SINE Alu 137 303 -9 1840 142 0 19 chr15 41169174 41169483 -60211038 + AluJb SINE Alu 1 303 -9 543 184 0 18 chr15 41169506 41169615 -60210906 - AluJo SINE Alu -1 311 205 786 183 0 0 chr15 41169628 41169754 -60210767 - AluJo SINE Alu -186 126 1 3361 148 11 2 chr15 41169806 41170334 -60210187 + Tigger1 DNA MER2_type 2 534 -1884 398 287 20 13 chr15 41170337 41170493 -60210028 + AluJb SINE Alu 140 254 -48 213 77 77 19 chr15 41170507 41170559 -60209962 + GA-rich Low_complexity Low_complexity 3 57 0 377 179 35 41 chr15 41170736 41170881 -60209640 + GA-rich Low_complexity Low_complexity 2 145 0 364 192 13 26 chr15 41170881 41170911 -60209610 + Tigger1 DNA MER2_type 521 550 -1868 1947 97 12 68 chr15 41170911 41171232 -60209289 - AluSx SINE Alu -8 304 2 364 192 13 26 chr15 41171232 41171279 -60209242 + Tigger1 DNA MER2_type 550 597 -1821 353 127 0 20 chr15 41171357 41171429 -60209092 + AluJo SINE Alu 82 136 -166 2816 118 29 0 chr15 41171446 41171863 -60208658 + Tigger1 DNA MER2_type 799 1227 -1191 2074 118 3 6 chr15 41171864 41172178 -60208343 + AluSp SINE Alu 1 313 0 4877 102 35 19 chr15 41172178 41172895 -60207626 + Tigger1 DNA MER2_type 1471 2202 -216 2216 81 3 0 chr15 41172895 41173190 -60207331 - AluSp SINE Alu -17 296 1 4877 102 35 19 chr15 41173190 41173216 -60207305 + Tigger1 DNA MER2_type 2202 2226 -192 681 179 8 0 chr15 41173216 41173339 -60207182 - FRAM SINE Alu -7 169 46 901 134 123 6 chr15 41173386 41173557 -60206964 + Tigger1 DNA MER2_type 2228 2418 0 27 0 0 0 chr15 41174033 41174060 -60206461 + GC_rich Low_complexity Low_complexity 1 27 0 337 333 7 28 chr15 41175351 41175492 -60205029 - MIR3 SINE MIR -6 202 65 551 291 194 47 chr15 41175921 41176053 -60204468 + L2 LINE L2 2825 2936 -377 376 209 102 94 chr15 41176053 41176307 -60204214 + MER112 DNA MER1_type 1 256 0 551 291 194 47 chr15 41176307 41176384 -60204137 + L2 LINE L2 2936 3000 -313 2182 85 0 23 chr15 41176384 41176730 -60203791 + AluSx SINE Alu 1 312 0 551 291 194 47 chr15 41176730 41176942 -60203579 + L2 LINE L2 3000 3309 -4 180 195 0 49 chr15 41177040 41177081 -60203440 - MIR SINE MIR -147 115 77 1652 119 19 8 chr15 41177471 41177732 -60202789 + AluSx SINE Alu 48 311 -1 1331 103 210 60 chr15 41177777 41178029 -60202492 + AluSx SINE Alu 1 290 -12 1451 177 34 10 chr15 41178115 41178409 -60202112 + AluJb SINE Alu 1 301 -11 662 275 129 66 chr15 41178511 41178995 -60201526 - L2 LINE L2 -18 3295 2757 2371 74 0 0 chr15 41178995 41179306 -60201215 - AluY SINE Alu 0 311 1 662 275 129 66 chr15 41179306 41179400 -60201121 - L2 LINE L2 -556 2757 2670 1021 168 9 35 chr15 41179401 41179633 -60200888 + AluSp SINE Alu 69 294 -19 27 0 0 0 chr15 41179834 41179861 -60200660 + AT_rich Low_complexity Low_complexity 1 27 0 429 207 107 144 chr15 41180301 41180379 -60200142 + HAL1 LINE L1 967 1046 -1461 1546 172 0 53 chr15 41180379 41180699 -60199822 + AluJb SINE Alu 5 307 -5 429 207 107 144 chr15 41180699 41180752 -60199769 + HAL1 LINE L1 1046 1099 -1408 2152 78 3 0 chr15 41180752 41181067 -60199454 - AluY SINE Alu 0 316 1 429 207 107 144 chr15 41181067 41181112 -60199409 + HAL1 LINE L1 1099 1144 -1363 777 158 0 43 chr15 41181112 41181251 -60199270 + AluJo/FLAM SINE Alu 1 133 -169 1441 189 7 30 chr15 41181253 41181549 -60198972 + AluJo SINE Alu 1 289 -23 429 207 107 144 chr15 41181549 41181625 -60198896 + HAL1 LINE L1 1145 1222 -1285 2344 92 0 0 chr15 41181625 41181929 -60198592 + AluSx SINE Alu 1 304 -8 429 207 107 144 chr15 41181929 41182060 -60198461 + HAL1 LINE L1 1222 1338 -1169 2118 92 6 54 chr15 41182060 41182376 -60198145 - AluSp SINE Alu -12 301 1 429 207 107 144 chr15 41182376 41182463 -60198058 + HAL1 LINE L1 1338 1427 -1080 1754 239 59 32 chr15 41182472 41182966 -60197555 - L1M4 LINE L1 -6035 507 1 1180 163 0 48 chr15 41183011 41183238 -60197283 + AluJo SINE Alu 87 302 -10 933 94 0 8 chr15 41183294 41183422 -60197099 - AluJb SINE Alu -185 127 1 743 230 0 30 chr15 41183425 41183590 -60196931 - FRAM SINE Alu -3 163 4 667 133 19 0 chr15 41183597 41183702 -60196819 - MER3 DNA MER1_type -97 112 6 989 189 0 63 chr15 41184020 41184210 -60196311 + MER5A DNA MER1_type 1 178 -11 1856 151 3 7 chr15 41184657 41184962 -60195559 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr15 41185317 41185339 -60195182 + GC_rich Low_complexity Low_complexity 1 22 0 1919 89 0 0 chr15 41185805 41186053 -60194468 + AluSx SINE Alu 56 303 -9 393 119 0 0 chr15 41187264 41187323 -60193198 - Alu SINE Alu -1 301 243 395 200 0 0 chr15 41187362 41187445 -60193076 - AluS SINE Alu -2 299 232 287 150 83 17 chr15 41187430 41187471 -60193050 - AluJb SINE Alu -29 273 225 * 1474 168 3 49 chr15 41187471 41187757 -60192764 - AluJb SINE Alu -39 273 1 287 150 83 17 chr15 41187757 41187775 -60192746 - AluJb SINE Alu -77 225 210 2101 111 3 16 chr15 41187980 41188287 -60192234 + AluSx SINE Alu 1 303 -9 21 36 0 0 chr15 41188374 41188402 -60192119 + AT_rich Low_complexity Low_complexity 1 28 0 446 197 26 26 chr15 41189429 41189546 -60190975 + FLAM_C SINE Alu 11 127 -16 229 307 0 18 chr15 41189619 41189733 -60190788 + HAL1 LINE L1 823 934 -1573 1973 135 26 0 chr15 41189753 41190056 -60190465 + AluSx SINE Alu 1 311 -1 1972 110 0 0 chr15 41190176 41190501 -60190020 - AluSg SINE Alu 0 325 1 819 171 19 6 chr15 41190550 41190708 -60189813 + L1MB7 LINE L1 6006 6165 -19 467 265 113 74 chr15 41191264 41191308 -60189213 - L1MC4a LINE L1 -1635 6173 6132 1556 144 0 113 chr15 41191308 41191654 -60188867 - AluJb SINE Alu -5 307 1 467 265 113 74 chr15 41191654 41191945 -60188576 - L1MC4a LINE L1 -1676 6132 5825 2175 115 0 6 chr15 41192288 41192601 -60187920 - AluSq SINE Alu 0 313 3 930 270 13 13 chr15 41192657 41192883 -60187638 + MIR SINE MIR 13 238 -24 2035 106 3 32 chr15 41193570 41193908 -60186613 - AluSp SINE Alu 0 313 1 2107 95 3 35 chr15 41193910 41194227 -60186294 - AluSg SINE Alu -1 309 3 1438 211 3 0 chr15 41194559 41194853 -60185668 - AluJo SINE Alu -17 295 1 1776 158 14 0 chr15 41194886 41195177 -60185344 + AluJo SINE Alu 3 297 -15 2065 93 58 0 chr15 41195181 41195472 -60185049 + AluSp SINE Alu 1 308 -5 1653 166 0 14 chr15 41195766 41196061 -60184460 + AluJo SINE Alu 6 296 -16 2541 48 0 3 chr15 41196247 41196540 -60183981 - AluY SINE Alu -19 292 1 267 258 0 34 chr15 41196544 41196633 -60183888 - L1MC5 LINE L1 -179 7782 7697 326 128 0 0 chr15 41196648 41196695 -60183826 + Alu SINE Alu 1 47 -261 1358 181 11 11 chr15 41197020 41197301 -60183220 - AluY SINE Alu -20 291 11 2256 98 0 3 chr15 41197366 41197662 -60182859 + AluSq SINE Alu 16 310 -3 435 38 0 0 chr15 41197671 41197724 -60182797 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 289 271 88 53 chr15 41197923 41198093 -60182428 + MIR SINE MIR 81 256 -6 2122 107 38 3 chr15 41198963 41199253 -60181268 + AluY SINE Alu 1 300 -11 718 144 168 0 chr15 41199882 41200007 -60180514 - MER46A DNA MER2_type -90 146 1 21 36 0 0 chr15 41200484 41200512 -60180009 + AT_rich Low_complexity Low_complexity 1 28 0 2082 104 0 7 chr15 41200965 41201235 -60179286 + AluSx SINE Alu 1 268 -44 195 42 0 0 chr15 41201237 41201261 -60179260 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1675 173 58 0 chr15 41201296 41201450 -60179071 - AluJb SINE Alu -18 294 150 347 0 0 23 chr15 41201450 41201494 -60179027 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 1675 173 58 0 chr15 41201494 41201617 -60178904 - AluJb SINE Alu -162 150 1 476 155 0 36 chr15 41201687 41201771 -60178750 + FLAM_A SINE Alu 44 124 -18 536 155 41 0 chr15 41202808 41202905 -60177616 + MER53 DNA DNA 85 185 -4 703 197 15 0 chr15 41202912 41203044 -60177477 + MER94 DNA DNA 1 134 0 21 36 0 0 chr15 41203065 41203093 -60177428 + AT_rich Low_complexity Low_complexity 1 28 0 1486 184 54 4 chr15 41203170 41203447 -60177074 - AluJo SINE Alu -14 298 8 25 0 0 0 chr15 41203450 41203475 -60177046 + AT_rich Low_complexity Low_complexity 1 25 0 2139 109 0 11 chr15 41203618 41203928 -60176593 - AluSx SINE Alu 0 307 1 2275 103 0 3 chr15 41204484 41204784 -60175737 - AluSg SINE Alu -10 300 2 2066 104 0 0 chr15 41205081 41205341 -60175180 - AluSq SINE Alu -53 260 1 555 238 216 14 chr15 41205426 41205796 -60174725 - L1MC4a LINE L1 -1675 6133 5689 596 280 102 88 chr15 41205988 41206420 -60174101 - L1MC4a LINE L1 -1979 5829 5392 1541 127 33 123 chr15 41206448 41206643 -60173878 - AluJb SINE Alu -5 307 153 713 125 0 0 chr15 41206643 41206747 -60173774 + U13 snRNA snRNA 1 104 0 1541 127 33 123 chr15 41206747 41206883 -60173638 - AluJb SINE Alu -159 153 6 1086 150 6 23 chr15 41207141 41207314 -60173207 + AluJb SINE Alu 133 302 -10 1684 189 10 0 chr15 41207951 41208248 -60172273 + AluJo SINE Alu 10 309 -3 905 257 9 14 chr15 41208280 41208502 -60172019 - MER58A DNA MER1_type -3 221 1 1498 44 6 0 chr15 41208551 41208732 -60171789 - L1PA4 LINE L1 -3 6152 5971 1064 267 139 9 chr15 41208762 41209200 -60171321 + L2 LINE L2 2819 3313 0 2037 131 0 0 chr15 41209730 41210030 -60170491 - AluSx SINE Alu 0 310 11 407 267 67 61 chr15 41210080 41210245 -60170276 + MIR3 SINE MIR 16 181 -27 436 163 151 0 chr15 41210245 41210331 -60170190 + AluJ/FLAM SINE Alu 1 99 -213 449 114 0 11 chr15 41210331 41210419 -60170102 + (CA)n Simple_repeat Simple_repeat 1 87 0 307 261 17 34 chr15 41211036 41211142 -60169379 - MIR SINE MIR -62 146 45 182 118 29 0 chr15 41211274 41211308 -60169213 + T-rich Low_complexity Low_complexity 4 38 0 2308 107 0 0 chr15 41212013 41212304 -60168217 + AluSx SINE Alu 6 296 -16 2273 114 0 3 chr15 41212312 41212619 -60167902 + AluSq SINE Alu 1 306 -7 1964 128 27 7 chr15 41214442 41214740 -60165781 - AluSx SINE Alu -8 304 1 1496 203 30 3 chr15 41215247 41215543 -60164978 + AluJb SINE Alu 1 304 -8 1909 152 10 3 chr15 41215899 41216195 -60164326 - AluJb SINE Alu -14 298 1 927 103 0 22 chr15 41216255 41216391 -60164130 - FLAM_C SINE Alu 0 133 1 189 0 0 0 chr15 41218467 41218488 -60162033 + (TA)n Simple_repeat Simple_repeat 2 22 0 1138 174 181 18 chr15 41218908 41218993 -60161528 + MER58B DNA MER1_type 14 84 -2336 1843 153 7 33 chr15 41218993 41219293 -60161228 + AluJb SINE Alu 3 294 -18 1138 174 181 18 chr15 41219293 41219489 -60161032 + MER58B DNA MER1_type 84 341 0 2178 108 17 17 chr15 41219515 41219812 -60160709 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr15 41220248 41220278 -60160243 + AT_rich Low_complexity Low_complexity 1 30 0 1535 151 19 22 chr15 41220304 41220575 -60159946 + AluJb SINE Alu 21 290 -22 787 44 83 0 chr15 41220590 41220820 -60159701 + (TA)n Simple_repeat Simple_repeat 1 249 0 1702 158 81 0 chr15 41222009 41222281 -60158240 + AluJb SINE Alu 6 299 -13 2162 93 0 45 chr15 41222341 41222652 -60157869 + AluSx SINE Alu 1 297 -15 308 179 30 0 chr15 41223241 41223308 -60157213 + MIR SINE MIR 161 229 -33 714 76 0 0 chr15 41223442 41223534 -60156987 - MER46A DNA MER2_type 0 236 145 1137 182 0 11 chr15 41223547 41223728 -60156793 - AluSx SINE Alu -131 181 3 2514 46 0 10 chr15 41224215 41224517 -60156004 - AluY SINE Alu -12 299 1 1811 134 7 50 chr15 41224793 41225091 -60155430 - AluJb SINE Alu -15 297 13 825 168 0 0 chr15 41225207 41225338 -60155183 + FLAM_C SINE Alu 2 132 -1 319 273 81 0 chr15 41225347 41225446 -60155075 + MIR SINE MIR 38 144 -64 * 739 241 79 29 chr15 41225441 41225682 -60154839 - MIR SINE MIR 0 262 10 286 266 49 42 chr15 41226019 41226162 -60154359 + MIR SINE MIR 8 151 -111 2310 186 29 77 chr15 41226167 41226814 -60153707 - LTR6A LTR ERV1 0 564 1 2256 113 3 3 chr15 41226881 41227192 -60153329 + AluSq SINE Alu 1 311 -2 2548 134 23 59 chr15 41227348 41227389 -60153132 + MER4E LTR ERV1 1 42 -737 1923 146 23 23 chr15 41227389 41227732 -60152789 - MER61A LTR ERV1 0 343 1 2548 134 23 59 chr15 41227732 41227765 -60152756 + MER4E LTR ERV1 42 75 -704 2081 137 14 0 chr15 41227765 41228058 -60152463 - AluSx SINE Alu -15 297 1 2548 134 23 59 chr15 41228058 41228409 -60152112 + MER4E LTR ERV1 75 577 -202 2473 86 0 13 chr15 41228409 41228722 -60151799 - AluSx SINE Alu -3 309 1 2548 134 23 59 chr15 41228722 41228918 -60151603 + MER4E LTR ERV1 577 779 0 266 280 118 21 chr15 41228992 41229085 -60151436 + MIR SINE MIR 43 144 -118 410 196 76 0 chr15 41229085 41229177 -60151344 - LTR36 LTR ERV1 0 611 513 1736 149 12 28 chr15 41229177 41229519 -60151002 - MER4A LTR ERV1 0 664 270 466 120 13 13 chr15 41229521 41229596 -60150925 - MER4A LTR ERV1 -589 75 1 * 917 186 135 103 chr15 41229596 41230041 -60150480 - LTR36 LTR ERV1 -94 517 58 407 176 120 19 chr15 41230064 41230172 -60150349 + MIR SINE MIR 140 258 -4 354 322 25 0 chr15 41231000 41231121 -60149400 + L2 LINE L2 3147 3270 -2 407 108 0 68 chr15 41231205 41231279 -60149242 - MER3 DNA MER1_type 0 209 141 1781 221 15 102 chr15 41231280 41231867 -60148654 + L1ME2 LINE L1 5611 6146 -18 831 194 6 34 chr15 41231867 41232042 -60148479 - MER3 DNA MER1_type -86 123 1 1279 119 36 55 chr15 41232388 41232454 -60148067 - MSTA LTR MaLR -2 426 360 2148 115 13 0 chr15 41232454 41232631 -60147890 - AluSq SINE Alu -5 308 124 192 40 0 0 chr15 41232631 41232656 -60147865 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2148 115 13 0 chr15 41232656 41232782 -60147739 - AluSq SINE Alu -189 124 1 1279 119 36 55 chr15 41232782 41232934 -60147587 - MSTA LTR MaLR -68 360 212 * 1738 214 29 47 chr15 41232917 41233361 -60147160 - MLT2B3 LTR ERVL -118 436 1 2368 99 3 0 chr15 41233373 41233676 -60146845 - AluSp SINE Alu -9 304 1 199 315 19 19 chr15 41233694 41233802 -60146719 + L2 LINE L2 1851 1958 -1356 230 98 49 0 chr15 41233805 41233846 -60146675 + T-rich Low_complexity Low_complexity 3 45 0 2518 89 0 0 chr15 41233849 41234162 -60146359 - AluSp SINE Alu 0 313 1 189 275 174 0 chr15 41234543 41234652 -60145869 + L2 LINE L2 2029 2156 -1158 548 146 0 0 chr15 41234983 41235065 -60145456 + AluS SINE Alu 2 83 -230 225 69 0 0 chr15 41235065 41235094 -60145427 + Alu SINE Alu 52 80 -223 1011 114 17 0 chr15 41235094 41235269 -60145252 + (ATGGTG)n Simple_repeat Simple_repeat 1 178 0 186 43 0 0 chr15 41235273 41235296 -60145225 + (TGG)n Simple_repeat Simple_repeat 1 23 0 1037 99 19 8 chr15 41235442 41235705 -60144816 + (TGG)n Simple_repeat Simple_repeat 1 266 0 1518 185 33 23 chr15 41236384 41236687 -60143834 + AluJo SINE Alu 1 306 -6 274 121 182 0 chr15 41236755 41236821 -60143700 + L2 LINE L2 3221 3298 -15 257 257 50 20 chr15 41236825 41236926 -60143595 - MER103 DNA DNA -62 104 1 22 35 0 0 chr15 41237111 41237140 -60143381 + AT_rich Low_complexity Low_complexity 1 29 0 2107 144 0 10 chr15 41237140 41237453 -60143068 + AluSx SINE Alu 1 310 -2 374 112 0 184 chr15 41237548 41237646 -60142875 - MADE1 DNA Mariner 0 80 1 293 306 63 89 chr15 41237653 41238003 -60142518 + L1ME LINE L1 5321 5661 -460 259 89 22 0 chr15 41238007 41238052 -60142469 - MADE1 DNA Mariner -34 46 1 28 0 0 0 chr15 41238338 41238366 -60142155 + AT_rich Low_complexity Low_complexity 1 28 0 1483 222 99 41 chr15 41238401 41238938 -60141583 - L1ME3A LINE L1 -190 5980 5413 304 171 39 77 chr15 41239082 41239257 -60141264 - L1ME3A LINE L1 -779 5399 5236 1390 241 64 29 chr15 41240946 41241075 -60139446 - MER63B DNA MER1_type -627 435 312 2149 116 10 0 chr15 41241075 41241376 -60139145 - AluSx SINE Alu -8 304 1 1390 241 64 29 chr15 41241376 41241666 -60138855 - MER63B DNA MER1_type -750 312 1 831 173 8 0 chr15 41242620 41242753 -60137768 - AluJo SINE Alu -178 134 1 919 141 0 0 chr15 41243339 41243474 -60137047 + FLAM_C SINE Alu 1 135 -8 828 144 0 0 chr15 41243477 41243602 -60136919 - AluSg/x SINE Alu -6 304 180 8825 50 6 15 chr15 41243602 41244673 -60135848 + MER11C LTR ERVK 1 1061 -10 1469 114 45 0 chr15 41244673 41244875 -60135646 - AluSx SINE Alu -101 211 1 28 0 0 0 chr15 41244882 41244910 -60135611 + AT_rich Low_complexity Low_complexity 1 28 0 295 289 91 25 chr15 41245032 41245062 -60135459 - L2 LINE L2 -8 3264 3237 2207 123 18 6 chr15 41245062 41245395 -60135126 - MER1B DNA MER1_type 0 337 1 295 289 91 25 chr15 41245395 41245485 -60135036 - L2 LINE L2 -35 3237 3136 285 249 33 58 chr15 41245616 41245802 -60134719 + L2 LINE L2 2971 3269 -3 23 33 0 0 chr15 41245839 41245869 -60134652 + AT_rich Low_complexity Low_complexity 1 30 0 296 280 20 0 chr15 41246552 41246652 -60133869 - MIR3 SINE MIR -41 167 66 213 259 35 0 chr15 41247587 41247645 -60132876 - L2 LINE L2 0 3272 3213 494 254 86 30 chr15 41247752 41247949 -60132572 - MIR SINE MIR -21 241 34 274 200 14 14 chr15 41247995 41248065 -60132456 - L2 LINE L2 -211 3061 2992 409 226 9 28 chr15 41248134 41248240 -60132281 - MER5B DNA MER1_type -1 177 74 21 57 0 0 chr15 41249117 41249152 -60131369 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr15 41249180 41249209 -60131312 + AT_rich Low_complexity Low_complexity 1 29 0 2347 115 0 0 chr15 41249243 41249580 -60130941 + AluSx SINE Alu 1 337 0 284 343 28 17 chr15 41249631 41249809 -60130712 - L1MC/D LINE L1 -2223 5585 5406 1827 157 0 14 chr15 41249860 41250154 -60130367 + AluJo SINE Alu 1 290 -22 319 62 0 97 chr15 41250155 41250268 -60130253 + (GGAA)n Simple_repeat Simple_repeat 1 102 0 332 250 81 16 chr15 41250451 41250575 -60129946 + L2 LINE L2 3171 3302 -11 470 66 16 0 chr15 41250575 41250636 -60129885 + U7 snRNA snRNA 1 62 -1 189 74 0 0 chr15 41250668 41250695 -60129826 + (CATA)n Simple_repeat Simple_repeat 2 28 0 421 216 55 106 chr15 41252463 41252530 -60127991 - MER5A DNA MER1_type 0 189 120 2478 85 0 0 chr15 41252530 41252835 -60127686 + AluY SINE Alu 1 305 -6 421 216 55 106 chr15 41252835 41252966 -60127555 - MER5A DNA MER1_type -69 120 1 229 299 11 11 chr15 41253135 41253222 -60127299 - MIR SINE MIR -136 126 40 2139 111 0 13 chr15 41253641 41253939 -60126582 + AluJo SINE Alu 4 297 -15 22 0 0 0 chr15 41253945 41253967 -60126554 + AT_rich Low_complexity Low_complexity 1 22 0 743 227 17 6 chr15 41253967 41254143 -60126378 + MER5A DNA MER1_type 12 189 0 2250 104 23 3 chr15 41254543 41254850 -60125671 - AluSq SINE Alu 0 313 1 4195 65 69 24 chr15 41254931 41255513 -60125008 + LTR66 LTR ERVL 1 608 -2 317 304 96 0 chr15 41255662 41255797 -60124724 + L1ME2 LINE L1 6014 6161 -3 57 66 0 0 chr15 41255800 41255906 -60124615 + AT_rich Low_complexity Low_complexity 1 106 0 2316 109 0 0 chr15 41256220 41256522 -60123999 - AluSx SINE Alu -10 302 1 2235 106 0 16 chr15 41256525 41256828 -60123693 - AluSq SINE Alu -15 298 1 1236 197 119 64 chr15 41257186 41257607 -60122914 + LTR56 LTR ERV1 2 445 0 1856 138 24 10 chr15 41257735 41258031 -60122490 - AluSx SINE Alu -12 300 1 1660 155 19 4 chr15 41258358 41258622 -60121899 - AluJb SINE Alu -23 289 22 2204 129 10 0 chr15 41258761 41259064 -60121457 - AluSx SINE Alu -6 306 1 1351 97 27 0 chr15 41259075 41259261 -60121260 - AluSc SINE Alu -5 304 114 811 82 231 0 chr15 41259278 41259425 -60121096 - MER30 DNA MER1_type -49 181 1 1433 162 143 4 chr15 41259569 41259834 -60120687 + AluJb SINE Alu 1 302 0 203 265 20 0 chr15 41260119 41260168 -60120353 + L2 LINE L2 3206 3255 -17 462 201 138 135 chr15 41260346 41260625 -60119896 + L1MC4 LINE L1 7634 7916 -126 1941 138 10 10 chr15 41260625 41260923 -60119598 - AluJb SINE Alu -14 298 1 462 201 138 135 chr15 41260923 41261050 -60119471 + L1MC4 LINE L1 7916 8041 -1 1456 156 136 66 chr15 41261507 41262077 -60118444 + MER39 LTR ERV1 2 697 -10 1572 123 31 50 chr15 41262088 41262349 -60118172 + AluSx SINE Alu 50 305 -7 2731 149 47 24 chr15 41262358 41262894 -60117627 + L1MB7 LINE L1 5637 6184 0 2564 57 3 0 chr15 41263099 41263395 -60117126 - AluY SINE Alu -14 297 1 2021 142 7 0 chr15 41264414 41264703 -60115818 - AluSx SINE Alu -21 291 1 25 0 0 0 chr15 41265590 41265615 -60114906 + AT_rich Low_complexity Low_complexity 1 25 0 1512 157 77 0 chr15 41266850 41267137 -60113384 + AluJo SINE Alu 1 307 0 211 204 0 0 chr15 41267354 41267408 -60113113 + A-rich Low_complexity Low_complexity 1 54 0 419 294 119 46 chr15 41267907 41268125 -60112396 + MIR SINE MIR 28 261 -1 1997 148 3 0 chr15 41268139 41268442 -60112079 - AluSx SINE Alu -8 304 1 219 250 19 0 chr15 41268726 41268778 -60111743 + GA-rich Low_complexity Low_complexity 2 54 0 334 236 29 50 chr15 41269108 41269248 -60111273 + L1MC5 LINE L1 7552 7688 -273 1875 85 0 4 chr15 41269304 41269539 -60110982 - AluSc SINE Alu -75 234 1 1075 159 0 6 chr15 41269539 41269702 -60110819 + AluJo SINE Alu 117 278 -34 2132 104 0 17 chr15 41269702 41270015 -60110506 - AluSx SINE Alu 0 308 1 1202 157 57 40 chr15 41270069 41270317 -60110204 - Tigger2a DNA MER2_type 0 444 193 1163 127 0 0 chr15 41270320 41270478 -60110043 - AluSg/x SINE Alu -19 293 136 924 110 41 164 chr15 41270478 41270639 -60109882 - Tigger2a DNA MER2_type -2516 192 63 2091 81 8 0 chr15 41270639 41270898 -60109623 + AluSx SINE Alu 27 287 -25 924 110 41 164 chr15 41270898 41270955 -60109566 - Tigger2a DNA MER2_type -2645 63 1 2221 92 3 41 chr15 41271448 41271765 -60108756 - AluSx SINE Alu -7 305 1 1265 224 32 35 chr15 41272267 41272505 -60108016 + MER2 DNA MER2_type 1 239 -105 1877 138 10 20 chr15 41272505 41272801 -60107720 - AluSx SINE Alu -19 293 1 1265 224 32 35 chr15 41272801 41272906 -60107615 + MER2 DNA MER2_type 239 343 -1 2124 208 107 51 chr15 41273662 41274373 -60106148 + L1MC4 LINE L1 7292 8042 0 191 36 36 0 chr15 41274498 41274526 -60105995 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 2267 112 7 0 chr15 41274830 41275133 -60105388 - AluSq SINE Alu -8 305 1 1520 245 80 53 chr15 41275457 41275818 -60104703 + L1ME3A LINE L1 5601 5984 -186 1594 138 100 38 chr15 41275818 41276109 -60104412 - AluJb SINE Alu -3 309 1 1520 245 80 53 chr15 41276109 41276298 -60104223 + L1ME3A LINE L1 5984 6166 -4 1537 183 3 55 chr15 41276365 41276677 -60103844 - AluJb SINE Alu -16 296 1 380 343 39 24 chr15 41276719 41276926 -60103595 + L2 LINE L2 2901 3110 -162 180 274 255 0 chr15 41277001 41277103 -60103418 + L2 LINE L2 3144 3271 -1 2502 83 0 0 chr15 41277479 41277781 -60102740 - AluSx SINE Alu -10 302 1 451 277 66 18 chr15 41279128 41279294 -60101227 + L3 LINE CR1 1385 1558 -19 216 0 0 0 chr15 41279559 41279583 -60100938 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 763 156 0 0 chr15 41279583 41279697 -60100824 - FLAM_C SINE Alu -193 119 3 21 36 0 0 chr15 41279827 41279855 -60100666 + AT_rich Low_complexity Low_complexity 1 28 0 1958 148 10 7 chr15 41280330 41280627 -60099894 - AluSx SINE Alu -14 298 1 431 214 214 26 chr15 41280627 41280973 -60099548 + L1ME4a LINE L1 5709 6119 -2 500 283 133 39 chr15 41281385 41281885 -60098636 + L2 LINE L2 2664 3292 -21 363 269 17 34 chr15 41281948 41282067 -60098454 - MIR SINE MIR -115 147 31 311 324 161 25 chr15 41282150 41282555 -60097966 - L2 LINE L2 -631 2683 2224 1253 185 119 11 chr15 41283130 41283416 -60097105 + MER58B DNA MER1_type 25 341 0 2306 89 7 0 chr15 41283429 41283721 -60096800 - AluSg SINE Alu -16 294 1 2229 121 0 3 chr15 41283730 41284027 -60096494 - AluSp SINE Alu -17 296 1 1329 122 43 135 chr15 41284034 41284225 -60096296 - AluJo SINE Alu -15 297 143 1603 189 11 11 chr15 41284225 41284511 -60096010 + AluJo SINE Alu 1 286 -26 1329 122 43 135 chr15 41284511 41284623 -60095898 - AluJo SINE Alu -169 143 22 2095 106 0 0 chr15 41284657 41284922 -60095599 - AluSq SINE Alu -48 265 1 827 154 0 23 chr15 41284938 41285068 -60095453 - FLAM_C SINE Alu -6 127 1 265 297 22 22 chr15 41285148 41285239 -60095282 - L2 LINE L2 -1357 1957 1867 781 271 101 72 chr15 41285666 41285963 -60094558 - L1MC4a LINE L1 -119 6002 5715 1720 134 24 45 chr15 41285963 41286253 -60094268 - AluJo SINE Alu -18 294 11 781 271 101 72 chr15 41286253 41286450 -60094071 - L1MC4a LINE L1 -406 5715 5486 2083 128 7 3 chr15 41286450 41286747 -60093774 - AluSx SINE Alu -14 298 1 781 271 101 72 chr15 41286747 41286845 -60093676 - L1MC4a LINE L1 -635 5486 5392 293 240 58 19 chr15 41286840 41286944 -60093577 + L1MC4 LINE L1 7139 7246 -796 * 871 170 7 20 chr15 41286949 41287102 -60093419 - FRAM SINE Alu -25 151 1 758 228 88 0 chr15 41287103 41287296 -60093225 + L1MC4 LINE L1 7238 7447 -595 455 263 8 23 chr15 41287309 41287442 -60093079 + L1MC4 LINE L1 7790 7920 -122 202 200 0 25 chr15 41287462 41287502 -60093019 + GA-rich Low_complexity Low_complexity 4 42 0 577 154 23 15 chr15 41287502 41287632 -60092889 + L1MC4 LINE L1 7912 8042 0 328 200 93 57 chr15 41287653 41287793 -60092728 - L1MC4a LINE L1 -2410 5398 5254 2139 188 194 24 chr15 41289383 41290038 -60090483 + L1MC4 LINE L1 7276 7995 0 2098 117 20 25 chr15 41290583 41290941 -60089580 + L1MA4 LINE L1 5939 6294 -6 2200 113 3 7 chr15 41291006 41291316 -60089205 - AluSx SINE Alu -3 309 1 291 209 12 35 chr15 41294990 41295076 -60085445 + L3 LINE CR1 1214 1297 -280 2038 141 6 13 chr15 41295588 41295900 -60084621 - AluSx SINE Alu -2 310 1 1939 171 34 8 chr15 41296164 41296520 -60084001 - MLT1A1 LTR MaLR 0 365 1 21 36 0 0 chr15 41296939 41296967 -60083554 + AT_rich Low_complexity Low_complexity 1 28 0 421 261 9 76 chr15 41297582 41297793 -60082728 - L2 LINE L2 -4 3309 3113 3449 197 70 33 chr15 41297828 41298642 -60081879 - MER21B LTR ERV1 -1 862 19 378 266 0 0 chr15 41298664 41298743 -60081778 - MER21B LTR ERV1 -773 90 12 450 301 68 6 chr15 41298763 41298926 -60081595 - L2 LINE L2 -261 3052 2880 2348 99 0 3 chr15 41298947 41299251 -60081270 - AluSg SINE Alu -7 303 1 198 391 87 32 chr15 41299666 41299919 -60080602 + L2 LINE L2 3006 3272 0 2138 138 17 46 chr15 41301427 41301774 -60078747 - MER1B DNA MER1_type 0 337 1 300 309 0 0 chr15 41301855 41301936 -60078585 + MIR SINE MIR 62 142 -66 1550 149 8 4 chr15 41301965 41302200 -60078321 + MER46A DNA MER2_type 1 236 0 1013 223 13 22 chr15 41302334 41302563 -60077958 - MIR SINE MIR -33 229 3 381 317 35 0 chr15 41302563 41302705 -60077816 + MIR SINE MIR 30 176 -86 255 203 188 0 chr15 41302699 41302763 -60077758 - L2 LINE L2 -1 3312 3237 * 232 243 71 0 chr15 41302769 41302839 -60077682 + MIR SINE MIR 188 262 0 217 244 0 0 chr15 41303445 41303486 -60077035 + (CA)n Simple_repeat Simple_repeat 2 42 0 978 236 48 0 chr15 41303694 41303902 -60076619 - MIR SINE MIR -44 218 1 2144 123 0 19 chr15 41304407 41304717 -60075804 - AluSx SINE Alu -8 304 1 319 309 41 31 chr15 41304823 41304920 -60075601 - MIR SINE MIR -87 121 24 393 315 103 7 chr15 41305619 41305687 -60074834 + MER5A DNA MER1_type 9 69 -120 1978 148 26 0 chr15 41305687 41305990 -60074531 + AluSx SINE Alu 1 311 -1 393 315 103 7 chr15 41305990 41306067 -60074454 + MER5A DNA MER1_type 69 168 -21 1291 183 0 0 chr15 41306180 41306399 -60074122 + AluJb SINE Alu 86 304 -8 272 192 19 0 chr15 41306467 41306519 -60074002 - L3b LINE CR1 -4 1579 1527 308 208 0 0 chr15 41306881 41306934 -60073587 + L1MD3 LINE L1 7064 7116 -879 2771 216 29 21 chr15 41306938 41307578 -60072943 + L1MD3 LINE L1 6136 6328 -16 766 172 0 33 chr15 41307688 41307810 -60072711 + FLAM_C SINE Alu 2 119 -14 21 0 0 0 chr15 41307810 41307831 -60072690 + AT_rich Low_complexity Low_complexity 1 21 0 184 322 348 0 chr15 41308165 41308280 -60072241 - L2 LINE L2 -4 3268 3114 580 251 113 9 chr15 41309469 41309700 -60070821 - L1ME4a LINE L1 -1 6120 5866 835 318 36 75 chr15 41309736 41310258 -60070263 - MER34 LTR ERV1 -29 513 12 1684 179 7 4 chr15 41310856 41311135 -60069386 + AluJb SINE Alu 13 292 -20 720 240 112 34 chr15 41311741 41311974 -60068547 + MIR SINE MIR 12 262 0 784 86 0 14 chr15 41312010 41312255 -60068266 + AluSg SINE Alu 1 293 -17 341 222 152 10 chr15 41312726 41312825 -60067696 - L2 LINE L2 -7 3265 3153 1769 153 18 3 chr15 41313029 41313340 -60067181 - AluSq SINE Alu 0 315 1 1039 119 0 0 chr15 41313340 41313474 -60067047 - AluSq/x SINE Alu -177 135 2 276 220 55 88 chr15 41315430 41315521 -60065000 - MIR SINE MIR -85 123 36 454 118 0 0 chr15 41315588 41315656 -60064865 - AluSq SINE Alu -10 302 235 1263 99 33 6 chr15 41315656 41315702 -60064819 - AluSq SINE Alu -127 186 143 2713 35 0 10 chr15 41315702 41316015 -60064506 - AluY SINE Alu -1 310 1 1263 99 33 6 chr15 41316015 41316149 -60064372 - AluSq SINE Alu -170 143 1 233 304 84 60 chr15 41316176 41316371 -60064150 - MIR SINE MIR -54 208 4 27 29 0 0 chr15 41317244 41317278 -60063243 + GC_rich Low_complexity Low_complexity 1 34 0 24 53 0 0 chr15 41317290 41317328 -60063193 + GC_rich Low_complexity Low_complexity 1 38 0 236 218 36 0 chr15 41318858 41318913 -60061608 - L1ME4a LINE L1 -81 6040 5984 202 247 93 93 chr15 41319350 41319447 -60061074 + L2 LINE L2 1915 2011 -1303 371 321 180 33 chr15 41319609 41320036 -60060485 + L2 LINE L2 2245 2734 -580 2367 86 3 0 chr15 41320489 41320792 -60059729 + AluY SINE Alu 1 304 -7 207 244 0 122 chr15 41320827 41320909 -60059612 + MER91A DNA MER1_type 1 72 -118 185 210 161 32 chr15 41321663 41321725 -60058796 + MIR SINE MIR 56 125 -83 183 42 0 0 chr15 41322325 41322349 -60058172 + (TA)n Simple_repeat Simple_repeat 2 25 0 2221 82 0 20 chr15 41322349 41322642 -60057879 - AluY SINE Alu -24 287 1 1256 159 40 49 chr15 41323550 41323776 -60056745 - MER58A DNA MER1_type 0 224 1 227 261 159 57 chr15 41324163 41324339 -60056182 + MIR SINE MIR 37 230 -32 21 36 0 0 chr15 41324458 41324486 -60056035 + AT_rich Low_complexity Low_complexity 1 28 0 21 89 0 0 chr15 41324500 41324556 -60055965 + AT_rich Low_complexity Low_complexity 1 56 0 2184 109 0 13 chr15 41324785 41325088 -60055433 + AluSg SINE Alu 1 299 -11 2244 122 3 0 chr15 41325452 41325763 -60054758 - AluSx SINE Alu 0 312 1 218 186 157 57 chr15 41326147 41326217 -60054304 - L2 LINE L2 -5 3267 3191 1918 123 20 20 chr15 41327228 41327528 -60052993 - AluSx SINE Alu -12 300 1 262 239 97 60 chr15 41327973 41328107 -60052414 - MIR SINE MIR 0 262 124 2374 92 0 0 chr15 41328502 41328797 -60051724 - AluSx SINE Alu -15 297 3 1766 131 99 26 chr15 41328822 41329135 -60051386 - MER44D DNA MER2_type -3 606 1 1514 156 35 96 chr15 41331310 41331624 -60048897 - AluJo SINE Alu -7 295 1 1693 144 59 0 chr15 41332595 41332865 -60047656 - AluSx SINE Alu -26 286 1 25 31 0 0 chr15 41334303 41334335 -60046186 + AT_rich Low_complexity Low_complexity 1 32 0 923 139 0 0 chr15 41335429 41335558 -60044963 - Tigger7 DNA MER2_type -1 2490 2362 3545 156 55 11 chr15 41335566 41336206 -60044315 - Tigger7 DNA MER2_type -1819 668 1 381 103 0 17 chr15 41336934 41336992 -60043529 - AluS SINE Alu -232 71 15 1345 129 47 13 chr15 41337224 41337457 -60043064 + MER96B DNA MER1_type? 1 241 -176 663 123 9 9 chr15 41337578 41337684 -60042837 + MER50 LTR ERV1 499 604 -130 2267 188 9 22 chr15 41337900 41338352 -60042169 - L1MB7 LINE L1 -136 6048 5603 181 321 19 0 chr15 41338780 41338833 -60041688 - L2 LINE L2 -8 3305 3252 193 375 0 0 chr15 41338983 41339079 -60041442 + L2 LINE L2 1748 1843 -1471 2053 120 0 7 chr15 41339156 41339455 -60041066 - AluSq SINE Alu -16 297 1 4580 190 48 31 chr15 41339497 41340513 -60040008 + Cheshire DNA MER1_type 7 1039 -1381 4291 161 63 72 chr15 41340516 41340982 -60039539 + Cheshire DNA MER1_type 1397 1866 -554 834 112 0 0 chr15 41340982 41341089 -60039432 + U6 snRNA snRNA 1 107 0 4291 161 63 72 chr15 41341089 41341148 -60039373 + Cheshire DNA MER1_type 1866 1924 -496 2337 93 0 6 chr15 41341148 41341459 -60039062 + AluSg SINE Alu 1 309 -1 4291 161 63 72 chr15 41341459 41341573 -60038948 + Cheshire DNA MER1_type 1924 2038 -382 2243 79 17 7 chr15 41341573 41341865 -60038656 + AluY SINE Alu 1 295 -16 4291 161 63 72 chr15 41341865 41342257 -60038264 + Cheshire DNA MER1_type 2038 2420 0 528 265 205 44 chr15 41342412 41342797 -60037724 + L2 LINE L2 2529 2975 -339 1983 215 75 18 chr15 41342980 41343473 -60037048 + MER74B LTR ERVL 52 572 -50 296 290 80 0 chr15 41343548 41343648 -60036873 - MLT1L LTR MaLR -8 607 500 364 288 45 0 chr15 41343773 41343905 -60036616 - MLT1L LTR MaLR -312 303 166 451 209 11 22 chr15 41344197 41344288 -60036233 - MER5A DNA MER1_type -9 180 91 3310 214 87 112 chr15 41345755 41346324 -60034197 + L2 LINE L2 1587 2169 -1144 2297 97 10 0 chr15 41346324 41346623 -60033898 - AluSp SINE Alu -11 302 1 3310 214 87 112 chr15 41346623 41347599 -60032922 + L2 LINE L2 2169 3097 -216 1944 146 0 25 chr15 41347867 41348183 -60032338 - AluSg SINE Alu 0 310 3 1514 35 0 0 chr15 41348345 41348516 -60032005 - L1PA5 LINE L1 0 6154 5984 249 33 0 0 chr15 41349539 41349569 -60030952 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 2280 120 37 142 chr15 41350453 41350556 -60029965 - MLT2C2 LTR ERVL 0 464 352 405 0 0 0 chr15 41350556 41350601 -60029920 + (GA)n Simple_repeat Simple_repeat 2 46 0 2280 120 37 142 chr15 41350601 41350769 -60029752 - MLT2C2 LTR ERVL -112 352 270 2234 95 3 41 chr15 41350769 41351086 -60029435 - AluSx SINE Alu -6 306 2 2280 120 37 142 chr15 41351086 41351329 -60029192 - MLT2C2 LTR ERVL -194 270 3 2097 133 0 0 chr15 41351621 41351906 -60028615 + AluSx SINE Alu 1 285 -27 2135 128 3 6 chr15 41352377 41352689 -60027832 + AluSx SINE Alu 1 311 -1 2213 107 7 0 chr15 41352838 41353137 -60027384 - AluSp SINE Alu -12 301 1 2312 82 3 3 chr15 41354665 41354959 -60025562 + AluY SINE Alu 2 295 -16 26 0 0 0 chr15 41355467 41355493 -60025028 + AT_rich Low_complexity Low_complexity 1 26 0 2252 98 0 3 chr15 41355675 41355970 -60024551 - AluSq SINE Alu -12 301 8 1500 203 70 0 chr15 41356684 41356797 -60023724 + AluJo SINE Alu 1 105 -207 198 0 0 0 chr15 41356797 41356819 -60023702 + (GAAAA)n Simple_repeat Simple_repeat 4 25 0 1500 203 70 0 chr15 41356819 41356991 -60023530 + AluJo SINE Alu 105 306 -6 2577 26 3 13 chr15 41357614 41357916 -60022605 + AluY SINE Alu 1 299 -12 2031 156 0 3 chr15 41358054 41358362 -60022159 - AluJb SINE Alu -5 307 1 2164 120 7 10 chr15 41358730 41359039 -60021482 - AluSx SINE Alu -4 308 1 514 295 70 20 chr15 41359284 41359484 -60021037 - MIR SINE MIR -50 212 3 284 226 160 44 chr15 41359836 41360016 -60020505 + MER5A DNA MER1_type 27 187 -2 305 259 208 4 chr15 41360412 41360541 -60019980 - MER5B DNA MER1_type -21 168 1 216 176 0 0 chr15 41360547 41360581 -60019940 - MIR SINE MIR -56 152 119 2318 106 0 0 chr15 41360718 41361020 -60019501 - AluSg SINE Alu -8 302 1 2337 198 83 27 chr15 41361364 41361466 -60019055 + MLT1G LTR MaLR 9 104 -486 830 223 77 59 chr15 41361466 41361616 -60018905 - MER58A DNA MER1_type -2196 224 67 2397 107 0 0 chr15 41361616 41361924 -60018597 - AluSg SINE Alu 0 310 3 830 223 77 59 chr15 41361924 41361993 -60018528 - MER58A DNA MER1_type -2353 67 1 2337 198 83 27 chr15 41361993 41362441 -60018080 + MLT1G LTR MaLR 104 590 0 472 229 50 14 chr15 41362734 41362874 -60017647 + MER31-int LTR ERV1 1043 1187 -3749 367 240 7 75 chr15 41362885 41363031 -60017490 - LTR27 LTR ERV1 -7 629 494 421 108 26 43 chr15 41363092 41363174 -60017347 - LTR28 LTR ERV1 -462 558 488 1856 128 16 22 chr15 41364063 41364375 -60016146 + AluSx SINE Alu 1 310 -2 808 150 0 50 chr15 41364731 41364871 -60015650 - FLAM_C SINE Alu 0 133 1 1974 139 13 3 chr15 41365729 41366032 -60014489 - AluSx SINE Alu -6 306 1 1416 152 9 0 chr15 41366141 41366365 -60014156 - AluJb SINE Alu -3 309 84 2349 71 34 0 chr15 41366574 41366870 -60013651 + AluSc SINE Alu 1 306 -3 984 231 54 0 chr15 41367368 41367628 -60012893 - HAL1 LINE L1 -951 1556 1283 2130 95 61 3 chr15 41367643 41367978 -60012543 - MER4B LTR ERV1 -278 332 1 2292 85 31 0 chr15 41368031 41368325 -60012196 + AluSg SINE Alu 1 303 -7 462 191 0 43 chr15 41368559 41368653 -60011868 + MER21B LTR ERV1 1 90 -773 2948 207 46 42 chr15 41368801 41369065 -60011456 + MER21B LTR ERV1 98 359 -504 3396 126 2 72 chr15 41369065 41369470 -60011051 + LTR26B LTR ERV1 1 356 -175 2140 103 24 3 chr15 41369470 41369762 -60010759 + AluSq SINE Alu 1 298 -15 3396 126 2 72 chr15 41369762 41369927 -60010594 + LTR26B LTR ERV1 356 531 0 2948 207 46 42 chr15 41369927 41370373 -60010148 + MER21B LTR ERV1 359 811 -52 2344 161 57 28 chr15 41370397 41370819 -60009702 - Tigger2a DNA MER2_type 0 434 1 2013 128 0 0 chr15 41371048 41371336 -60009185 + AluJb SINE Alu 1 288 -24 2237 82 7 14 chr15 41371689 41371983 -60008538 - AluY SINE Alu -19 292 1 595 105 258 8 chr15 41372176 41372300 -60008221 - MER4C LTR ERV1 -20 445 291 1342 143 133 48 chr15 41372355 41372670 -60007851 - MER4A LTR ERV1 -322 342 1 827 174 28 0 chr15 41372670 41372814 -60007707 + FAM SINE Alu 26 173 -12 1499 195 29 11 chr15 41372863 41373140 -60007381 + AluJo SINE Alu 1 282 -30 378 0 0 0 chr15 41373170 41373212 -60007309 + (CA)n Simple_repeat Simple_repeat 2 43 0 332 43 0 21 chr15 41373266 41373313 -60007208 + (TG)n Simple_repeat Simple_repeat 2 47 0 207 114 0 0 chr15 41374122 41374157 -60006364 + (GA)n Simple_repeat Simple_repeat 1 35 0 186 100 0 60 chr15 41374157 41374207 -60006314 + (TA)n Simple_repeat Simple_repeat 1 47 0 659 273 99 65 chr15 41374405 41374929 -60005592 + MER34 LTR ERV1 1 542 0 2078 147 0 0 chr15 41374976 41375269 -60005252 + AluSx SINE Alu 1 293 -19 2308 149 65 173 chr15 41375742 41376409 -60004112 - LTR8A LTR ERV1 -8 719 152 1888 160 3 14 chr15 41376409 41376722 -60003799 + AluJo SINE Alu 1 312 0 2308 149 65 173 chr15 41376722 41376860 -60003661 - LTR8A LTR ERV1 -575 152 1 7577 55 0 0 chr15 41377469 41378532 -60001989 - L1PA6 LINE L1 -5 6149 5093 390 239 182 45 chr15 41378703 41378950 -60001571 + L1ME4a LINE L1 5706 5986 -135 225 110 50 130 chr15 41379108 41379208 -60001313 + L1ME4a LINE L1 5993 6084 -37 918 125 0 0 chr15 41379479 41379599 -60000922 + AluSq/x SINE Alu 1 120 -193 3197 200 48 17 chr15 41379679 41379781 -60000740 + L1MA9 LINE L1 5507 5604 -708 1874 150 3 7 chr15 41379781 41380075 -60000446 + AluJb SINE Alu 1 293 -19 3197 200 48 17 chr15 41380075 41380717 -59999804 + L1MA9 LINE L1 5604 6274 -38 1989 115 7 0 chr15 41380734 41381064 -59999457 + AluSx SINE Alu 1 332 0 1721 197 64 12 chr15 41381261 41381606 -59998915 - MLT1F1 LTR MaLR 0 567 205 4581 124 56 64 chr15 41381606 41382884 -59997637 - pTR5 LTR ERV1 -133 2027 6 622 216 17 111 chr15 41382962 41383054 -59997467 - MLT1F1 LTR MaLR -372 170 102 892 158 32 37 chr15 41383054 41383244 -59997277 + MER53 DNA DNA 1 189 0 622 216 17 111 chr15 41383244 41383332 -59997189 - MLT1F1 LTR MaLR -440 102 7 1671 103 139 91 chr15 41383538 41383727 -59996794 - MSTA LTR MaLR -50 378 165 7198 60 86 0 chr15 41383727 41384780 -59995741 - L1PA8 LINE L1 -1 6171 5102 1671 103 139 91 chr15 41384780 41384921 -59995600 - MSTA LTR MaLR -263 165 32 352 297 31 46 chr15 41385039 41385129 -59995392 - L1M4 LINE L1 -1784 4362 4272 2108 98 0 57 chr15 41385129 41385444 -59995077 - AluY SINE Alu -14 297 1 352 297 31 46 chr15 41385444 41385581 -59994940 - L1M4 LINE L1 -1874 4272 4138 1894 142 0 50 chr15 41386241 41386558 -59993963 - AluSx SINE Alu -11 301 1 450 168 53 27 chr15 41386727 41386853 -59993668 + L1MA9 LINE L1 6128 6238 -74 1637 173 7 7 chr15 41387663 41387941 -59992580 - AluJo SINE Alu -21 291 14 2201 110 0 7 chr15 41388220 41388521 -59992000 - AluSx SINE Alu -13 299 1 864 256 36 52 chr15 41388522 41388831 -59991690 + L2 LINE L2 2353 2656 -658 249 167 0 0 chr15 41388913 41388967 -59991554 + L1MC4 LINE L1 6652 6705 -1337 501 228 24 60 chr15 41388970 41389137 -59991384 + L2 LINE L2 3152 3312 -1 1056 263 123 81 chr15 41389547 41389847 -59990674 - HAL1 LINE L1 -1091 1416 1130 1346 168 81 134 chr15 41389847 41390081 -59990440 - MER110A LTR ERV1 0 468 272 2144 129 0 7 chr15 41390081 41390390 -59990131 + AluJo SINE Alu 2 308 -4 1346 168 81 134 chr15 41390390 41390649 -59989872 - MER110A LTR ERV1 -196 272 1 1056 263 123 81 chr15 41390649 41390964 -59989557 - HAL1 LINE L1 -1377 1130 830 860 170 0 0 chr15 41390964 41391111 -59989410 + L1MB1 LINE L1 6020 6166 -2 1056 263 123 81 chr15 41391111 41391709 -59988812 - HAL1 LINE L1 -1677 830 1 182 167 28 0 chr15 41391721 41391757 -59988764 + L3 LINE CR1 1539 1575 -2 1751 169 7 13 chr15 41392194 41392502 -59988019 + AluJo SINE Alu 1 306 -6 3136 186 4 30 chr15 41392738 41393415 -59987106 + L1M4 LINE L1 4343 5002 -1144 2306 106 3 3 chr15 41393451 41393753 -59986768 + AluSx SINE Alu 1 302 -10 214 274 255 0 chr15 41394129 41394231 -59986290 - L2 LINE L2 -1 3271 3144 440 343 39 24 chr15 41394306 41394513 -59986008 - L2 LINE L2 -162 3110 2901 1522 183 3 55 chr15 41394555 41394867 -59985654 + AluJb SINE Alu 1 296 -16 1554 245 80 53 chr15 41394934 41395123 -59985398 - L1ME3A LINE L1 -4 6166 5984 1579 138 100 38 chr15 41395123 41395414 -59985107 + AluJb SINE Alu 1 309 -3 1554 245 80 53 chr15 41395414 41395775 -59984746 - L1ME3A LINE L1 -186 5984 5601 2253 112 7 0 chr15 41396099 41396402 -59984119 + AluSq SINE Alu 1 305 -8 191 36 36 0 chr15 41396706 41396734 -59983787 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 2145 210 107 51 chr15 41396859 41397570 -59982951 - L1MC4 LINE L1 0 8042 7292 1342 224 32 35 chr15 41398326 41398431 -59982090 - MER2 DNA MER2_type -1 343 239 1865 138 10 20 chr15 41398431 41398727 -59981794 + AluSx SINE Alu 1 293 -19 1342 224 32 35 chr15 41398727 41398965 -59981556 - MER2 DNA MER2_type -105 239 1 2203 95 3 41 chr15 41399467 41399784 -59980737 + AluSx SINE Alu 1 305 -7 328 143 0 0 chr15 41400277 41400326 -59980195 - MER8 DNA MER2_type 0 239 191 204 241 74 0 chr15 41400720 41400774 -59979747 + L3 LINE CR1 1518 1575 -2 1773 179 3 10 chr15 41401211 41401519 -59979002 + AluJo SINE Alu 1 306 -6 4621 184 18 42 chr15 41401755 41402470 -59978051 + L1MB5 LINE L1 4343 5073 -1101 2130 117 3 26 chr15 41402470 41402778 -59977743 + AluSq SINE Alu 1 301 -12 4621 184 18 42 chr15 41402778 41403256 -59977265 + L1MB5 LINE L1 5073 5561 -613 207 0 0 0 chr15 41403256 41403279 -59977242 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4621 184 18 42 chr15 41403279 41403923 -59976598 + L1MB5 LINE L1 5561 6134 -40 1781 168 25 0 chr15 41403923 41404209 -59976312 + AluJb SINE Alu 1 293 -19 4621 184 18 42 chr15 41404209 41404250 -59976271 + L1MB5 LINE L1 6134 6174 0 271 318 176 0 chr15 41405143 41405313 -59975208 + MIR SINE MIR 15 214 -48 1683 162 10 30 chr15 41405412 41405715 -59974806 + AluJo SINE Alu 1 297 -15 1069 153 6 0 chr15 41405715 41405872 -59974649 + AluJb SINE Alu 134 291 -21 183 42 0 0 chr15 41405872 41405896 -59974625 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 563 207 21 101 chr15 41406087 41406237 -59974284 - MIR SINE MIR -79 183 23 2259 133 8 8 chr15 41406237 41406591 -59973930 - THE1A LTR MaLR -1 354 1 11894 83 2 31 chr15 41406591 41406915 -59973606 - THE1A-int LTR MaLR 0 1580 1248 2316 112 0 7 chr15 41406915 41407220 -59973301 + AluSq SINE Alu 1 303 -10 11894 83 2 31 chr15 41407220 41408026 -59972495 - THE1A-int LTR MaLR -332 1248 509 2239 121 7 0 chr15 41408026 41408332 -59972189 - AluSx SINE Alu -4 308 1 11894 83 2 31 chr15 41408332 41408827 -59971694 - THE1A-int LTR MaLR -1071 509 1 2544 85 11 8 chr15 41408827 41409181 -59971340 - THE1A LTR MaLR 0 355 1 563 207 21 101 chr15 41409181 41409216 -59971305 - MIR SINE MIR -236 26 11 2211 181 47 2 chr15 41409409 41409813 -59970708 + MSTB LTR MaLR 1 422 -4 34 65 0 0 chr15 41409848 41409910 -59970611 + AT_rich Low_complexity Low_complexity 1 62 0 2308 116 3 0 chr15 41409936 41410246 -59970275 + AluSp SINE Alu 1 311 -2 585 121 0 0 chr15 41411659 41411742 -59968779 + AluSg/x SINE Alu 215 297 -15 246 194 0 32 chr15 41411745 41411807 -59968714 + CT-rich Low_complexity Low_complexity 2 61 0 7804 44 1 33 chr15 41411807 41413398 -59967123 + SVA Other Other 1 1383 -3 500 250 17 10 chr15 41414072 41414208 -59966313 - MIR SINE MIR -66 142 7 952 116 55 22 chr15 41414321 41414502 -59966019 - MER53 DNA DNA 0 189 3 2231 96 0 10 chr15 41414672 41414953 -59965568 + AluSp SINE Alu 1 280 -33 423 0 0 0 chr15 41414953 41415000 -59965521 + (CA)n Simple_repeat Simple_repeat 1 47 0 2212 117 0 0 chr15 41415025 41415325 -59965196 + AluSq SINE Alu 1 300 -13 1851 97 120 0 chr15 41415655 41415922 -59964599 - AluSc SINE Alu 0 299 1 234 313 142 33 chr15 41416343 41416554 -59963967 - L2 LINE L2 -542 2772 2539 823 182 256 12 chr15 41416635 41416877 -59963644 + AluJo SINE Alu 2 302 -10 278 323 10 10 chr15 41416997 41417096 -59963425 - L2 LINE L2 -954 2360 2262 317 143 0 0 chr15 41417126 41417175 -59963346 - AluSp SINE Alu -155 148 100 2303 108 7 0 chr15 41417645 41417950 -59962571 + AluSx SINE Alu 3 309 -3 1300 320 51 73 chr15 41417961 41418215 -59962306 - MERVL LTR ERVL -2675 2810 2552 1080 218 9 13 chr15 41418215 41418440 -59962081 + MER58A DNA MER1_type 1 224 0 1300 320 51 73 chr15 41418440 41418710 -59961811 - MERVL LTR ERVL -2933 2552 2278 1833 158 11 0 chr15 41418710 41418989 -59961532 - AluJo SINE Alu -17 295 14 1300 320 51 73 chr15 41418989 41420100 -59960421 - MERVL LTR ERVL -3207 2278 1139 5472 55 38 30 chr15 41420331 41420525 -59959996 - MER4E LTR ERV1 0 766 575 2359 109 0 0 chr15 41420525 41420836 -59959685 + AluSx SINE Alu 1 311 -1 5472 55 38 30 chr15 41420836 41421401 -59959120 - MER4E LTR ERV1 -191 575 1 1688 125 62 18 chr15 41421751 41422046 -59958475 - AluJb SINE Alu 0 307 1 341 109 125 0 chr15 41422069 41422133 -59958388 - MER5A DNA MER1_type -83 106 35 2053 148 7 0 chr15 41422299 41422609 -59957912 - AluSq SINE Alu -1 312 1 1696 45 0 27 chr15 41422619 41422843 -59957678 - L1PA5 LINE L1 0 6154 5937 498 297 69 48 chr15 41422853 41423271 -59957250 - MERVL LTR ERVL -4569 427 1 303 230 184 0 chr15 41423780 41423867 -59956654 + MIR SINE MIR 160 262 0 1755 151 75 0 chr15 41424956 41425234 -59955287 + AluJb SINE Alu 1 299 -13 1579 216 11 20 chr15 41425536 41425892 -59954629 - MLT1A1 LTR MaLR 0 365 13 1127 158 66 0 chr15 41425892 41426088 -59954433 + AluJb SINE Alu 98 306 -6 2167 150 105 0 chr15 41427040 41427420 -59953101 + MSTC LTR MaLR 1 420 -8 565 307 24 6 chr15 41427451 41427617 -59952904 - MIR SINE MIR -92 170 2 1216 14 28 0 chr15 41427823 41427964 -59952557 - AluYa5/8 SINE Alu -1 310 166 3010 159 55 2 chr15 41427980 41428539 -59951982 - L1MB5 LINE L1 0 6174 5586 47 19 0 0 chr15 41428571 41428625 -59951896 + AT_rich Low_complexity Low_complexity 1 54 0 900 236 36 19 chr15 41428629 41428848 -59951673 - MER20 DNA MER1_type 0 219 1 185 105 0 26 chr15 41429238 41429276 -59951245 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 3536 37 0 0 chr15 41429319 41429729 -59950792 - L1PA3 LINE L1 0 6155 5746 2637 46 0 0 chr15 41429857 41430159 -59950362 - AluY SINE Alu -9 302 1 983 154 108 26 chr15 41430877 41431072 -59949449 + AluJb SINE Alu 93 303 -9 195 42 0 0 chr15 41431290 41431314 -59949207 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1593 151 54 12 chr15 41431314 41431452 -59949069 - AluJb SINE Alu -42 270 139 225 0 0 0 chr15 41431452 41431477 -59949044 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1593 151 54 12 chr15 41431477 41431597 -59948924 - AluJb SINE Alu -173 139 1 229 358 81 0 chr15 41431598 41431721 -59948800 + L2 LINE L2 2227 2359 -955 846 148 0 16 chr15 41431723 41431851 -59948670 + FLAM_C SINE Alu 1 126 -17 198 318 83 59 chr15 41431869 41432158 -59948363 + L2 LINE L2 2349 2644 -670 21 0 0 0 chr15 41432630 41432651 -59947870 + AT_rich Low_complexity Low_complexity 1 21 0 860 111 8 0 chr15 41432651 41432768 -59947753 - FLAM_C SINE Alu -25 118 1 1394 207 36 16 chr15 41434226 41434531 -59945990 - AluJo SINE Alu -1 311 1 1855 134 13 43 chr15 41434878 41435200 -59945321 + AluSx SINE Alu 1 313 0 684 24 0 0 chr15 41436634 41436717 -59943804 - L1PA3 LINE L1 0 6155 6073 3388 19 0 0 chr15 41436850 41437227 -59943294 - L1PA3 LINE L1 -357 5798 5422 319 309 55 9 chr15 41438753 41438863 -59941658 - L2 LINE L2 -18 3295 3181 432 306 6 35 chr15 41439599 41439769 -59940752 - MIR3 SINE MIR 0 208 44 378 226 23 140 chr15 41441251 41441472 -59939049 + MER112 DNA MER1_type 66 260 0 726 267 58 0 chr15 41444186 41444426 -59936095 - MIR SINE MIR -5 257 4 198 71 0 0 chr15 41444871 41444899 -59935622 + (CTTTG)n Simple_repeat Simple_repeat 3 30 0 1577 130 0 42 chr15 41444907 41445146 -59935375 - AluJo SINE Alu -30 282 54 570 276 77 11 chr15 41445278 41445459 -59935062 + LTR33 LTR ERVL 1 193 -328 452 289 20 41 chr15 41445493 41445690 -59934831 + LTR33 LTR ERVL 326 518 -3 232 324 122 7 chr15 41445850 41445989 -59934532 + L2 LINE L2 3126 3280 -33 273 228 18 0 chr15 41446005 41446062 -59934459 + L2 LINE L2 3215 3272 0 903 152 0 0 chr15 41446203 41446335 -59934186 + AluJb SINE Alu 1 132 -180 747 186 44 11 chr15 41446338 41446521 -59934000 - L1MA8 LINE L1 -10 6281 6093 2545 206 116 36 chr15 41446526 41447326 -59933195 + L1ME3A LINE L1 5291 6160 -10 32 67 0 0 chr15 41447388 41447448 -59933073 + AT_rich Low_complexity Low_complexity 1 60 0 2113 116 14 0 chr15 41447448 41447732 -59932789 - AluSq SINE Alu -25 288 1 2177 91 37 17 chr15 41448963 41449259 -59931262 + AluSx SINE Alu 1 302 -10 732 212 8 0 chr15 41449339 41449471 -59931050 + FLAM_C SINE Alu 2 134 -9 393 230 80 0 chr15 41449633 41449733 -59930788 - MIR SINE MIR -90 172 65 1583 196 126 8 chr15 41449734 41450107 -59930414 - MER63 DNA MER1_type 0 1060 644 956 263 14 0 chr15 41450107 41450324 -59930197 + MER58A DNA MER1_type 5 224 0 264 172 0 52 chr15 41450324 41450382 -59930139 - MER63 DNA MER1_type -619 311 257 1963 139 13 7 chr15 41450395 41450696 -59929825 - AluJb SINE Alu -7 305 3 262 135 0 0 chr15 41450698 41450735 -59929786 - MER63 DNA MER1_type -399 37 1 1815 137 8 111 chr15 41451012 41451399 -59929122 - MER7A DNA MER2_type -1 345 1 27 29 0 0 chr15 41452630 41452664 -59927857 + AT_rich Low_complexity Low_complexity 1 34 0 1676 142 50 4 chr15 41453625 41453906 -59926615 + AluJb SINE Alu 11 304 -8 337 309 48 0 chr15 41454111 41454237 -59926284 - L2 LINE L2 0 3313 3182 2201 119 13 0 chr15 41454264 41454566 -59925955 + AluSx SINE Alu 1 306 -6 302 250 44 96 chr15 41454721 41454764 -59925757 + L2 LINE L2 3143 3187 -85 1888 157 0 16 chr15 41454764 41455070 -59925451 - AluJo SINE Alu -11 301 1 302 250 44 96 chr15 41455070 41455162 -59925359 + L2 LINE L2 3187 3271 -1 213 297 93 8 chr15 41455328 41455446 -59925075 + MIR SINE MIR 93 220 -42 287 220 46 0 chr15 41455604 41455713 -59924808 + (TA)n Simple_repeat Simple_repeat 1 114 0 1776 158 3 17 chr15 41455782 41456073 -59924448 - AluJo SINE Alu -21 291 5 271 300 125 8 chr15 41456438 41456558 -59923963 - MIR SINE MIR -57 151 18 238 296 45 11 chr15 41456701 41456789 -59923732 - MIR SINE MIR -73 135 45 425 216 35 99 chr15 41456996 41457174 -59923347 + L1ME LINE L1 56 283 -5922 1443 127 163 0 chr15 41457174 41457426 -59923095 + AluJo SINE Alu 1 293 -9 425 216 35 99 chr15 41457426 41457443 -59923078 + L1ME LINE L1 283 300 -5905 2183 127 0 10 chr15 41457569 41457876 -59922645 + AluSx SINE Alu 1 304 -8 2201 113 3 0 chr15 41457894 41458185 -59922336 + AluSx SINE Alu 1 292 -20 1234 134 5 11 chr15 41458228 41458415 -59922106 - AluJb SINE Alu -7 305 120 276 46 0 127 chr15 41458419 41458482 -59922039 - FLAM_A SINE Alu 0 133 86 379 317 42 30 chr15 41458671 41458838 -59921683 + L1MCc LINE L1 413 581 -5842 974 254 181 55 chr15 41458969 41459320 -59921201 + L1MCc LINE L1 820 1125 -5298 1670 201 0 26 chr15 41459320 41459633 -59920888 + AluJo SINE Alu 1 305 -7 2497 113 52 54 chr15 41459637 41459690 -59920831 + MSTA LTR MaLR 4 56 -372 1638 109 125 12 chr15 41459690 41459946 -59920575 + AluSg1 SINE Alu 1 285 -24 2497 113 52 54 chr15 41459946 41460318 -59920203 + MSTA LTR MaLR 56 428 0 974 254 181 55 chr15 41460318 41460492 -59920029 + L1MCc LINE L1 1127 1417 -5006 1943 134 3 47 chr15 41460572 41460893 -59919628 - AluSx SINE Alu -5 307 1 1005 151 0 58 chr15 41461037 41461209 -59919312 + Tigger2a DNA MER2_type 1 162 -272 487 231 0 72 chr15 41461217 41461297 -59919224 + L1MCc LINE L1 1434 1518 -5423 2148 147 0 6 chr15 41461297 41461611 -59918910 + AluSx SINE Alu 1 312 0 487 231 0 72 chr15 41461611 41461725 -59918796 + L1MCc LINE L1 1518 1614 -5327 416 236 43 32 chr15 41461726 41461855 -59918666 + AluJo SINE Alu 123 215 -87 524 264 114 53 chr15 41461866 41462081 -59918440 - L1MEc LINE L1 -5126 1270 1031 1987 160 13 3 chr15 41462081 41462388 -59918133 - AluSx SINE Alu -2 310 1 524 264 114 53 chr15 41462388 41462471 -59918050 - L1MEc LINE L1 -5365 1031 954 655 143 15 45 chr15 41462508 41462594 -59917927 + AluSq/x SINE Alu 1 83 -229 4890 55 2 2 chr15 41462594 41463181 -59917340 + LTR14C LTR ERVK 1 587 0 655 143 15 45 chr15 41463181 41463227 -59917294 + AluSq/x SINE Alu 83 129 -183 18211 78 5 2 chr15 41463227 41465540 -59914981 + HERVK14C LTR ERVK 47 2366 -5051 40972 69 3 8 chr15 41465640 41470861 -59909660 + HERVK14C LTR ERVK 2223 7417 0 4823 67 2 0 chr15 41470861 41471447 -59909074 + LTR14C LTR ERVK 1 587 0 1637 101 0 5 chr15 41471447 41471655 -59908866 + AluSg/x SINE Alu 81 287 -25 180 0 0 0 chr15 41471658 41471678 -59908843 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1898 133 10 39 chr15 41472889 41473198 -59907323 + AluJo SINE Alu 9 308 -4 22 0 0 0 chr15 41473326 41473348 -59907173 + AT_rich Low_complexity Low_complexity 1 22 0 734 201 0 67 chr15 41473756 41473941 -59906580 - FRAM SINE Alu 0 176 8 296 300 8 17 chr15 41473978 41474061 -59906460 + CT-rich Low_complexity Low_complexity 2 85 -35 2397 104 0 0 chr15 41474061 41474370 -59906151 - AluSq SINE Alu -4 309 1 296 300 8 17 chr15 41474370 41474406 -59906115 + CT-rich Low_complexity Low_complexity 85 120 0 219 69 0 0 chr15 41474930 41474959 -59905562 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 185 345 0 0 chr15 41475015 41475073 -59905448 + MIR SINE MIR 87 144 -118 308 119 17 0 chr15 41475298 41475357 -59905164 + L1PA16 LINE L1 6107 6166 0 1349 186 6 109 chr15 41475637 41475822 -59904699 - AluSp SINE Alu -24 289 149 1827 173 14 0 chr15 41475822 41476111 -59904410 + AluSx SINE Alu 1 293 -19 1349 186 6 109 chr15 41476111 41476247 -59904274 - AluSp SINE Alu -164 149 1 540 259 80 24 chr15 41476262 41476474 -59904047 - MIR SINE MIR 0 262 39 2296 118 0 6 chr15 41477264 41477578 -59902943 + AluSx SINE Alu 1 312 0 3225 135 65 2 chr15 41477643 41478139 -59902382 - MER1A DNA MER1_type 0 527 1 1869 164 14 0 chr15 41478375 41478667 -59901854 + AluJo SINE Alu 1 296 -16 5388 79 20 14 chr15 41478677 41479439 -59901082 + MER4E LTR ERV1 1 766 0 2469 89 3 0 chr15 41479530 41479834 -59900687 - AluSg SINE Alu -5 305 1 1470 201 37 48 chr15 41479973 41480351 -59900170 + MLT1A2 LTR MaLR 1 374 0 487 189 95 61 chr15 41482150 41482230 -59898291 - MIR3 SINE MIR -39 169 93 1162 232 83 61 chr15 41482230 41482687 -59897834 + MLT1C LTR MaLR 1 467 0 487 189 95 61 chr15 41482687 41482754 -59897767 - MIR3 SINE MIR -115 93 17 234 229 0 33 chr15 41483072 41483133 -59897388 - L2 LINE L2 -1 3312 3254 643 214 103 0 chr15 41483411 41483556 -59896965 + LTR33 LTR ERVL 5 164 -357 1098 239 59 16 chr15 41483562 41483868 -59896653 + ERVL LTR ERVL 4110 4428 -1336 666 286 65 70 chr15 41483858 41484101 -59896420 + ERVL LTR ERVL 5131 5374 -390 * 2160 107 0 20 chr15 41484101 41484400 -59896121 + AluSg SINE Alu 1 293 -17 666 286 65 70 chr15 41484400 41484769 -59895752 + ERVL LTR ERVL 5374 5740 -24 1354 240 221 16 chr15 41485268 41485622 -59894899 + L1MEc LINE L1 100 380 -5835 2146 115 7 0 chr15 41485622 41485910 -59894611 - AluSg SINE Alu -19 291 2 1354 240 221 16 chr15 41485910 41486179 -59894342 + L1MEc LINE L1 380 592 -5623 1735 192 3 10 chr15 41486179 41486487 -59894034 + AluJo SINE Alu 1 306 -6 1354 240 221 16 chr15 41486487 41486675 -59893846 + L1MEc LINE L1 592 1169 -5046 837 141 0 44 chr15 41486676 41486811 -59893710 + FLAM_C SINE Alu 2 130 -3 32 26 0 0 chr15 41486811 41486850 -59893671 + AT_rich Low_complexity Low_complexity 1 39 0 2343 99 0 0 chr15 41486873 41487167 -59893354 + AluSx SINE Alu 1 294 -18 251 278 139 0 chr15 41487264 41487379 -59893142 + MIR SINE MIR 104 234 -28 231 149 0 21 chr15 41487560 41487607 -59892914 + AluJb SINE Alu 87 132 -170 230 217 14 0 chr15 41487607 41487676 -59892845 + (TA)n Simple_repeat Simple_repeat 1 70 0 926 131 54 42 chr15 41487677 41487845 -59892676 + AluJb SINE Alu 127 296 -16 526 203 198 9 chr15 41487845 41488062 -59892459 + L1MEc LINE L1 1160 1417 -4798 231 61 0 0 chr15 41488063 41488096 -59892425 + (TG)n Simple_repeat Simple_repeat 1 33 0 2179 104 0 4 chr15 41488096 41488374 -59892147 - AluSg SINE Alu -33 277 1 509 186 31 113 chr15 41488378 41488419 -59892102 + L1MEc LINE L1 2292 2335 -3880 1848 137 48 7 chr15 41488419 41488712 -59891809 + AluJo SINE Alu 1 305 -7 509 186 31 113 chr15 41488712 41488799 -59891722 + L1MEc LINE L1 2335 2428 -3787 1800 159 47 0 chr15 41488799 41489076 -59891445 + AluJo SINE Alu 1 290 -22 1988 110 0 63 chr15 41489077 41489394 -59891127 + AluSx SINE Alu 2 298 -14 509 186 31 113 chr15 41489394 41489456 -59891065 + L1MEc LINE L1 2427 2469 -3746 21 36 0 0 chr15 41489456 41489484 -59891037 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr15 41489687 41489708 -59890813 + AT_rich Low_complexity Low_complexity 1 21 0 227 200 17 17 chr15 41490436 41490496 -59890025 + (CGG)n Simple_repeat Simple_repeat 2 61 0 2240 73 10 23 chr15 41490560 41490860 -59889661 - AluSc SINE Alu -13 296 1 1662 205 73 9 chr15 41491039 41491464 -59889057 + L1MEc LINE L1 2470 2921 -3294 * 1843 203 100 48 chr15 41491451 41491890 -59888631 + L1M4 LINE L1 4363 4844 -1302 1777 134 3 96 chr15 41491890 41492233 -59888288 - AluJb SINE Alu -1 311 1 1843 203 100 48 chr15 41492233 41492404 -59888117 + L1M4 LINE L1 4844 5005 -1141 2345 102 3 0 chr15 41492407 41492702 -59887819 + AluSp SINE Alu 1 296 -17 1232 207 96 32 chr15 41492740 41493020 -59887501 - MLT1F1 LTR MaLR -267 300 3 345 275 83 47 chr15 41493055 41493248 -59887273 - MLT1F1-int LTR MaLR -43 1328 1129 287 315 94 11 chr15 41493563 41493744 -59886777 - MLT1F1-int LTR MaLR -479 892 697 989 190 0 0 chr15 41493951 41494125 -59886396 + FRAM SINE Alu 1 171 -5 836 280 29 32 chr15 41494143 41494454 -59886067 - MLT1F1-int LTR MaLR -760 611 302 422 191 12 35 chr15 41494492 41494612 -59885909 - MLT1F1-int LTR MaLR -1297 74 1 2290 189 10 125 chr15 41494612 41494691 -59885830 - MLT1F1 LTR MaLR 0 567 480 2201 102 3 26 chr15 41494691 41494996 -59885525 - AluSx SINE Alu -14 298 1 2290 189 10 125 chr15 41494996 41495013 -59885508 - MLT1F1 LTR MaLR -87 480 463 2220 120 3 10 chr15 41495013 41495314 -59885207 - AluSx SINE Alu -13 299 1 2290 189 10 125 chr15 41495314 41495769 -59884752 - MLT1F1 LTR MaLR -104 463 -43 2195 119 0 3 chr15 41495769 41496072 -59884449 - AluSq SINE Alu -11 302 1 2290 189 10 125 chr15 41496072 41496092 -59884429 - MLT1F1 LTR MaLR -610 4294967253 68 1035 171 6 0 chr15 41496092 41496256 -59884265 - FAM SINE Alu -10 165 1 2290 189 10 125 chr15 41496256 41496305 -59884216 - MLT1F1 LTR MaLR -498 69 16 1342 95 0 0 chr15 41496473 41496641 -59883880 - AluSg/x SINE Alu -17 293 126 2259 87 40 3 chr15 41496644 41496942 -59883579 - AluY SINE Alu 0 311 3 3051 152 116 21 chr15 41497182 41497698 -59882823 + LTR51 LTR ERV1 3 587 -84 2124 147 0 0 chr15 41497698 41498010 -59882511 + AluJo SINE Alu 1 312 0 3051 152 116 21 chr15 41498010 41498104 -59882417 + LTR51 LTR ERV1 587 671 0 950 126 0 0 chr15 41498694 41498821 -59881700 - AluSx SINE Alu -145 167 41 896 144 0 0 chr15 41498927 41499059 -59881462 - AluSg/x SINE Alu -11 301 170 1844 111 0 0 chr15 41499561 41499796 -59880725 + AluSx SINE Alu 1 235 -77 212 51 0 51 chr15 41499811 41499850 -59880671 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 567 132 0 0 chr15 41500379 41500470 -59880051 + (TGGA)n Simple_repeat Simple_repeat 4 94 0 242 267 164 27 chr15 41500813 41500959 -59879562 - MER5A DNA MER1_type 0 189 24 393 273 58 78 chr15 41501007 41501503 -59879018 - MARNA DNA Mariner -8 578 9 690 262 52 26 chr15 41501524 41501757 -59878764 - MIR SINE MIR -21 241 3 810 150 0 0 chr15 41501769 41501882 -59878639 - FLAM_C SINE Alu -26 117 5 2032 159 0 0 chr15 41502746 41503042 -59877479 - AluJb SINE Alu -16 296 1 2113 123 16 3 chr15 41503519 41503827 -59876694 - AluJb SINE Alu 0 312 1 663 0 0 0 chr15 41504707 41504779 -59875742 - tRNA-His-CAC tRNA tRNA -3 72 1 663 0 0 0 chr15 41505445 41505517 -59875004 + tRNA-His-CAC tRNA tRNA 1 72 -3 1711 65 0 9 chr15 41505946 41506160 -59874361 - AluSg/x SINE Alu 0 310 99 663 0 0 0 chr15 41507252 41507324 -59873197 + tRNA-His-CAC tRNA tRNA 1 72 -3 1174 122 17 0 chr15 41507630 41507810 -59872711 - AluSg/x SINE Alu -1 309 127 23 0 0 0 chr15 41507819 41507842 -59872679 + AT_rich Low_complexity Low_complexity 1 23 0 832 178 20 0 chr15 41508658 41508804 -59871717 - FRAM SINE Alu -7 169 21 572 284 35 74 chr15 41508815 41509009 -59871512 - Charlie8 DNA MER1_type -1889 528 328 2520 52 0 13 chr15 41509009 41509314 -59871207 - AluY SINE Alu -10 301 1 572 284 35 74 chr15 41509314 41509536 -59870985 - Charlie8 DNA MER1_type -2089 328 144 2282 94 14 0 chr15 41509536 41509833 -59870688 + AluSx SINE Alu 1 301 -11 572 284 35 74 chr15 41509833 41509930 -59870591 - Charlie8 DNA MER1_type -2273 144 45 399 143 29 14 chr15 41510272 41510342 -59870179 + MER66B LTR ERV1 288 358 -128 23 0 0 0 chr15 41510342 41510365 -59870156 + AT_rich Low_complexity Low_complexity 1 23 0 327 305 30 8 chr15 41510559 41510690 -59869831 + L1ME LINE L1 5568 5701 -420 1793 167 3 10 chr15 41510799 41511093 -59869428 + AluJb SINE Alu 1 292 -20 1261 199 70 50 chr15 41511117 41511279 -59869242 + L1MC4 LINE L1 6784 6941 -1101 2367 101 0 0 chr15 41511279 41511586 -59868935 + AluSx SINE Alu 1 307 -5 1261 199 70 50 chr15 41511586 41511765 -59868756 + L1MC4 LINE L1 6941 7132 -910 273 139 0 0 chr15 41511765 41511808 -59868713 + MER4A LTR ERV1 47 89 -575 1498 156 0 12 chr15 41511808 41512051 -59868470 - AluJb SINE Alu -9 303 64 451 85 0 0 chr15 41512163 41512222 -59868299 - Alu SINE Alu -259 59 1 2126 107 205 100 chr15 41512222 41512744 -59867777 + MER4A LTR ERV1 88 664 0 1442 267 58 27 chr15 41512744 41513260 -59867261 + L1MC4 LINE L1 7146 7677 -365 2417 87 0 13 chr15 41513260 41513572 -59866949 + AluY SINE Alu 1 308 -3 270 171 0 0 chr15 41513601 41513642 -59866879 + MER57A LTR ERV1 295 335 -68 583 294 57 4 chr15 41513690 41513969 -59866552 + L1MC4 LINE L1 7690 7983 -59 777 166 0 29 chr15 41513985 41514124 -59866397 - FLAM_C SINE Alu -7 136 2 825 155 0 8 chr15 41514444 41514573 -59865948 + FLAM_C SINE Alu 1 128 -5 1494 201 61 0 chr15 41514584 41514863 -59865658 + AluJo SINE Alu 1 296 -16 22 0 0 0 chr15 41515073 41515095 -59865426 + AT_rich Low_complexity Low_complexity 1 22 0 294 207 341 0 chr15 41515767 41515902 -59864619 + MER5A DNA MER1_type 9 189 0 686 179 0 0 chr15 41515968 41516080 -59864441 - FRAM SINE Alu -66 110 1 1910 141 24 7 chr15 41516242 41516540 -59863981 + AluSx SINE Alu 1 303 -9 2124 208 107 51 chr15 41517224 41517935 -59862586 + L1MC4 LINE L1 7292 8042 0 191 36 36 0 chr15 41518060 41518088 -59862433 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 2262 116 7 0 chr15 41518392 41518695 -59861826 - AluSq SINE Alu -8 305 1 2332 82 3 3 chr15 41520223 41520517 -59860004 + AluY SINE Alu 2 295 -16 26 0 0 0 chr15 41521024 41521050 -59859471 + AT_rich Low_complexity Low_complexity 1 26 0 2259 99 0 3 chr15 41521232 41521526 -59858995 - AluSq SINE Alu -13 300 8 3553 106 0 26 chr15 41622019 41622334 -59758187 + L1PA6 LINE L1 5475 5772 -382 2189 82 4 0 chr15 41622334 41622604 -59757917 + AluY SINE Alu 35 305 -6 3553 106 0 26 chr15 41622604 41622817 -59757704 + L1PA6 LINE L1 5772 5989 -165 2823 118 29 0 chr15 41623170 41623587 -59756934 - Tigger1 DNA MER2_type -1191 1227 799 356 127 0 20 chr15 41623604 41623676 -59756845 - AluJo SINE Alu -166 136 82 247 88 0 0 chr15 41623754 41623788 -59756733 - Tigger1 DNA MER2_type -1821 597 564 713 143 0 0 chr15 41623801 41623906 -59756615 + AluSq/x SINE Alu 2 106 -207 262 278 16 50 chr15 41623960 41624365 -59756156 + GA-rich Low_complexity Low_complexity 1 391 0 27 0 0 0 chr15 41624845 41624872 -59755649 + GC_rich Low_complexity Low_complexity 1 27 0 907 134 123 6 chr15 41625348 41625519 -59755002 - Tigger1 DNA MER2_type 0 2418 2228 518 182 10 0 chr15 41625566 41625665 -59754856 + FRAM SINE Alu 46 145 -31 1048 101 7 0 chr15 41625769 41625907 -59754614 - AluSq/x SINE Alu -173 139 1 452 224 28 19 chr15 41626382 41626489 -59754032 + L2 LINE L2 3144 3251 -21 382 300 94 0 chr15 41626546 41626716 -59753805 + MIR SINE MIR 70 255 -7 22 88 0 0 chr15 41627258 41627315 -59753206 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr15 41627346 41627369 -59753152 + AT_rich Low_complexity Low_complexity 1 23 0 2055 133 0 10 chr15 41627369 41627663 -59752858 - AluSx SINE Alu -21 291 1 3751 183 123 14 chr15 41627852 41628861 -59751660 + MER52A LTR ERV1 1 1272 -6 486 312 82 68 chr15 41628979 41629269 -59751252 - MLT1K LTR MaLR -54 534 232 2396 98 0 0 chr15 41629269 41629565 -59750956 + AluSx SINE Alu 1 296 -16 486 312 82 68 chr15 41629565 41629800 -59750721 - MLT1K LTR MaLR -356 232 2 376 129 14 29 chr15 41629999 41630069 -59750452 + Alu SINE Alu 234 302 0 211 316 13 0 chr15 41630113 41630189 -59750332 - MIR SINE MIR -30 232 156 * 974 252 4 46 chr15 41630187 41630449 -59750072 + MIR SINE MIR 12 262 0 317 111 0 0 chr15 41630479 41630524 -59749997 - MER4D LTR ERV1 -77 826 782 364 324 29 22 chr15 41630527 41630666 -59749855 - MIR SINE MIR -122 140 1 1855 79 4 0 chr15 41631081 41631321 -59749200 - MER41A LTR ERV1 0 554 314 226 188 0 0 chr15 41631316 41631364 -59749157 - Alu SINE Alu 0 301 254 * 995 115 0 7 chr15 41631366 41631505 -59749016 - AluSq/x SINE Alu -173 139 2 2499 85 0 3 chr15 41631506 41631836 -59748685 - MER41A LTR ERV1 -225 329 1 3200 163 34 63 chr15 41632008 41632800 -59747721 + L1MB3 LINE L1 4644 5458 -725 809 207 24 12 chr15 41632800 41632964 -59747557 + FAM SINE Alu 1 166 -9 3200 163 34 63 chr15 41632964 41633019 -59747502 + L1MB3 LINE L1 5458 5513 -670 216 0 0 0 chr15 41633019 41633043 -59747478 + (CA)n Simple_repeat Simple_repeat 2 25 0 3200 163 34 63 chr15 41633043 41633117 -59747404 + L1MB3 LINE L1 5513 5588 -595 2080 145 0 0 chr15 41633117 41633414 -59747107 + AluSx SINE Alu 3 299 -13 3200 163 34 63 chr15 41633414 41633780 -59746741 + L1MB3 LINE L1 5588 5899 -284 671 178 67 15 chr15 41633780 41633915 -59746606 + AluJo SINE Alu 2 143 -169 627 280 66 44 chr15 41635494 41635764 -59744757 + LTR33A LTR ERVL 13 288 -235 357 148 9 0 chr15 41635764 41635839 -59744682 - LTR41 LTR ERVL 0 795 701 826 158 0 0 chr15 41635840 41635967 -59744554 + FLAM_C SINE Alu 1 127 -16 1171 241 180 52 chr15 41635984 41636556 -59743965 - LTR41 LTR ERVL -54 719 74 311 167 2 17 chr15 41636556 41636625 -59743896 - MLT1E3 LTR MaLR 0 624 322 912 221 53 12 chr15 41636745 41636989 -59743532 + AluSq SINE Alu 54 307 -6 542 184 142 0 chr15 41637366 41637507 -59743014 - MIR SINE MIR -27 235 75 276 169 208 26 chr15 41637660 41637737 -59742784 + MIR SINE MIR 20 110 -98 2138 114 3 7 chr15 41638176 41638466 -59742055 - AluSx SINE Alu -23 289 1 296 305 53 15 chr15 41638508 41638639 -59741882 - MER77 LTR ERV1 -62 543 408 532 176 0 0 chr15 41638683 41638768 -59741753 + FRAM SINE Alu 73 157 -19 440 263 12 22 chr15 41638854 41639006 -59741515 - MER21B LTR ERV1 -398 207 17 3712 243 25 80 chr15 41639006 41639390 -59741131 - L1M LINE L1 -801 5345 4941 2237 89 24 0 chr15 41639390 41639683 -59740838 - AluSp SINE Alu -13 300 1 3712 243 25 80 chr15 41639683 41639776 -59740745 - L1M LINE L1 -1205 4941 4844 2105 145 0 0 chr15 41639776 41640080 -59740441 - AluJb SINE Alu -8 304 1 3712 243 25 80 chr15 41640080 41640267 -59740254 - L1M LINE L1 -1302 4844 4648 1668 150 35 3 chr15 41640267 41640554 -59739967 - AluSx SINE Alu -16 296 1 3712 243 25 80 chr15 41640554 41640786 -59739735 - L1M LINE L1 -1498 4648 4405 1675 164 11 11 chr15 41640786 41641067 -59739454 + AluJo SINE Alu 1 281 -31 3712 243 25 80 chr15 41641067 41641497 -59739024 - L1M LINE L1 -1741 4405 4109 * 14541 19 8 1 chr15 41641493 41643423 -59737098 + L1P1 LINE L1 3705 5645 -510 259 317 46 83 chr15 41643647 41643676 -59736845 - L2 LINE L2 -217 3055 3026 2307 79 0 30 chr15 41643676 41644022 -59736499 - AluSx SINE Alu 0 312 1 259 317 46 83 chr15 41644022 41644099 -59736422 - L2 LINE L2 -246 3026 2948 386 209 102 94 chr15 41644099 41644353 -59736168 - MER112 DNA MER1_type 0 256 1 259 317 46 83 chr15 41644353 41644485 -59736036 - L2 LINE L2 -324 2948 2825 285 333 7 28 chr15 41644914 41645055 -59735466 + MIR3 SINE MIR 65 202 -6 796 103 7 97 chr15 41646047 41646192 -59734329 + FLAM_C SINE Alu 1 132 -1 2482 194 88 11 chr15 41646535 41647060 -59733461 - MLT1F1 LTR MaLR -2 565 1 2498 52 0 0 chr15 41647766 41648057 -59732464 + AluY SINE Alu 1 291 -20 2066 143 0 13 chr15 41648308 41648444 -59732077 + AluSx SINE Alu 1 137 -175 2234 92 0 10 chr15 41648444 41648773 -59731748 + AluSq SINE Alu 1 313 0 2066 143 0 13 chr15 41648773 41648943 -59731578 + AluSx SINE Alu 137 303 -9 1959 142 0 19 chr15 41649034 41649343 -59731178 + AluJb SINE Alu 1 303 -9 545 184 0 18 chr15 41649366 41649475 -59731046 - AluJo SINE Alu -1 311 205 783 183 0 0 chr15 41649488 41649614 -59730907 - AluJo SINE Alu -186 126 1 3375 148 11 2 chr15 41649666 41650194 -59730327 + Tigger1 DNA MER2_type 2 534 -1884 385 287 20 13 chr15 41650197 41650353 -59730168 + AluJb SINE Alu 140 254 -48 213 77 77 19 chr15 41650367 41650419 -59730102 + GA-rich Low_complexity Low_complexity 3 57 0 29 61 0 0 chr15 41650642 41650675 -59729846 + AT_rich Low_complexity Low_complexity 1 33 0 1283 165 4 57 chr15 41651078 41651326 -59729195 - AluJo SINE Alu -73 239 5 1989 136 7 7 chr15 41651380 41651674 -59728847 - AluJb SINE Alu -18 294 1 1734 111 12 95 chr15 41651707 41651886 -59728635 - AluSx SINE Alu -14 298 156 2884 3 0 0 chr15 41651886 41652188 -59728333 - AluYa5 SINE Alu -9 302 1 1734 111 12 95 chr15 41652188 41652333 -59728188 - AluSx SINE Alu -156 156 1 770 234 103 38 chr15 41652436 41652793 -59727728 - MLT1I LTR MaLR 0 409 1 2343 89 13 19 chr15 41652876 41653189 -59727332 - AluSp SINE Alu -2 311 1 6309 162 21 0 chr15 41653189 41654239 -59726282 - L1MC1 LINE L1 -8 6325 5254 553 174 0 0 chr15 41654256 41654354 -59726167 - AluSg/x SINE Alu -1 308 211 355 93 0 0 chr15 41654454 41654508 -59726013 + AluSp/q SINE Alu 246 299 -4 205 171 0 24 chr15 41654631 41654672 -59725849 + GA-rich Low_complexity Low_complexity 5 44 0 743 110 0 0 chr15 41654949 41655049 -59725472 + AluJb SINE Alu 160 259 -53 207 0 0 0 chr15 41655160 41655183 -59725338 + (A)n Simple_repeat Simple_repeat 1 23 0 2134 126 0 16 chr15 41655337 41655647 -59724874 - AluSq SINE Alu -8 305 1 1900 157 61 28 chr15 41655688 41656051 -59724470 - THE1C LTR MaLR 0 375 1 1827 182 48 8 chr15 41656373 41656724 -59723797 - MLT1A1 LTR MaLR 0 365 1 2469 80 3 10 chr15 41656770 41657084 -59723437 - AluSp SINE Alu -1 312 1 5929 113 29 1 chr15 41657272 41658140 -59722381 - L1PA13 LINE L1 0 6163 5272 817 209 10 20 chr15 41658277 41658473 -59722048 - AluSp SINE Alu 0 313 120 22 35 0 0 chr15 41658661 41658690 -59721831 + AT_rich Low_complexity Low_complexity 1 29 0 1080 196 117 32 chr15 41658875 41659156 -59721365 - MLT1A1 LTR MaLR -4 361 57 1434 133 5 5 chr15 41659156 41659366 -59721155 + AluSg/x SINE Alu 86 295 -17 771 164 0 0 chr15 41659702 41659830 -59720691 - AluSg/x SINE Alu -1 308 181 1946 120 11 3 chr15 41659937 41660220 -59720301 + AluSx SINE Alu 23 307 -5 5082 111 0 10 chr15 41660307 41661050 -59719471 - LTR17 LTR ERV1 0 780 1 1999 132 0 39 chr15 41661108 41661419 -59719102 - AluSx SINE Alu -13 299 1 4148 127 52 0 chr15 41661947 41662529 -59717992 + LTR9 LTR ERV1 1 612 0 453 297 54 7 chr15 41662682 41662830 -59717691 - MIR SINE MIR -73 189 35 1913 137 45 3 chr15 41662890 41663182 -59717339 - AluJb SINE Alu -8 304 1 2163 114 0 7 chr15 41663587 41663884 -59716637 - AluSg SINE Alu -15 295 1 30 59 0 0 chr15 41663884 41663935 -59716586 + AT_rich Low_complexity Low_complexity 1 51 0 207 0 0 0 chr15 41664066 41664089 -59716432 + (TG)n Simple_repeat Simple_repeat 2 24 0 2286 114 0 0 chr15 41664172 41664478 -59716043 - AluSg SINE Alu -2 308 3 2157 89 67 8 chr15 41664491 41664859 -59715662 - LTR7 LTR ERV1 0 450 1 382 270 58 69 chr15 41665296 41665485 -59715036 + MIR SINE MIR 30 216 -46 21 36 0 0 chr15 41665502 41665530 -59714991 + AT_rich Low_complexity Low_complexity 1 28 0 1229 274 60 3 chr15 41665900 41666232 -59714289 + MLT1H1 LTR MaLR 12 362 -193 761 171 0 0 chr15 41666687 41666798 -59713723 + FLAM_C SINE Alu 1 111 -32 713 276 130 21 chr15 41667265 41667595 -59712926 + MLT1J LTR MaLR 1 366 -145 2378 156 79 9 chr15 41667762 41668193 -59712328 + LOR1b LTR ERV1 1 461 0 297 352 102 20 chr15 41668323 41668577 -59711944 - L2 LINE L2 -221 3051 2776 1288 102 0 11 chr15 41668577 41668753 -59711768 + AluSq SINE Alu 1 174 -139 2123 128 112 11 chr15 41668764 41669140 -59711381 + MSTA LTR MaLR 15 428 0 348 289 15 30 chr15 41669146 41669281 -59711240 + HERV16 LTR ERVL 357 489 -4507 2251 100 0 40 chr15 41669284 41669605 -59710916 + AluSg SINE Alu 1 308 -2 1519 144 111 22 chr15 41669614 41669885 -59710636 + AluJb SINE Alu 1 295 -17 591 356 0 0 chr15 41669887 41670075 -59710446 + HERV16 LTR ERVL 474 661 -4335 23 86 0 0 chr15 41670540 41670598 -59709923 + AT_rich Low_complexity Low_complexity 1 58 0 687 298 133 19 chr15 41670655 41670970 -59709551 + HERV16 LTR ERVL 731 1081 -3915 1503 173 0 11 chr15 41671398 41671670 -59708851 + AluJb SINE Alu 44 312 0 1323 291 45 19 chr15 41671670 41672089 -59708432 + HERV16 LTR ERVL 2577 3006 -1990 893 318 84 5 chr15 41672127 41672520 -59708001 + HERV16 LTR ERVL 3112 3535 -2229 372 227 191 0 chr15 41672730 41672838 -59707683 - LTR33A LTR ERVL -111 412 284 254 204 0 19 chr15 41672838 41672892 -59707629 + LTR41 LTR ERVL 1 53 -720 1934 226 78 35 chr15 41672893 41673428 -59707093 + MLT1E1 LTR MaLR 6 563 -91 1686 110 73 4 chr15 41673537 41673782 -59706739 + AluSx SINE Alu 37 298 -14 822 207 58 5 chr15 41673782 41673979 -59706542 - L1MC/D LINE L1 -503 5661 5483 1795 188 35 49 chr15 41673997 41674422 -59706099 - L1MC/D LINE L1 -986 5160 4742 744 212 30 69 chr15 41674486 41674717 -59705804 - L1ME2 LINE L1 -127 6037 5816 186 43 0 0 chr15 41675184 41675207 -59705314 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1398 241 34 13 chr15 41676841 41677222 -59703299 - MLT2C1 LTR ERVL -8 389 1 198 306 125 28 chr15 41677821 41677965 -59702556 - L2 LINE L2 -183 3089 2932 361 147 27 13 chr15 41678256 41678331 -59702190 - L1MDa LINE L1 -6188 352 277 1345 147 0 50 chr15 41678380 41678618 -59701903 - AluJo SINE Alu 0 312 87 1770 161 0 38 chr15 41678636 41678952 -59701569 - AluJo SINE Alu -8 304 1 270 236 0 0 chr15 41678959 41679031 -59701490 - L1ME2 LINE L1 -1 6177 6098 2522 63 0 0 chr15 41679032 41679334 -59701187 - AluY SINE Alu -9 302 1 22 0 0 0 chr15 41679334 41679356 -59701165 + AT_rich Low_complexity Low_complexity 1 22 0 294 128 21 0 chr15 41679594 41679641 -59700880 + MER58 DNA MER1_type 2373 2420 0 477 171 0 0 chr15 41679996 41680072 -59700449 + AluSg/x SINE Alu 210 285 -27 2206 121 3 0 chr15 41680110 41680415 -59700106 + AluSx SINE Alu 1 306 -6 316 136 68 17 chr15 41680908 41680967 -59699554 - MER81 DNA DNA -49 65 4 196 286 0 0 chr15 41681743 41681792 -59698729 - MIR SINE MIR -45 217 169 2201 118 0 7 chr15 41682311 41682608 -59697913 - AluSx SINE Alu -17 295 1 222 261 0 76 chr15 41682711 41682803 -59697718 - MIR SINE MIR -54 208 124 1962 146 3 7 chr15 41683118 41683460 -59697061 + AluSq SINE Alu 1 313 0 2085 141 0 0 chr15 41683850 41684162 -59696359 - AluSx SINE Alu 0 312 1 387 0 0 0 chr15 41684558 41684601 -59695920 + (CA)n Simple_repeat Simple_repeat 2 44 0 2303 176 54 54 chr15 41684978 41685415 -59695106 + MLT1D LTR MaLR 1 441 -64 2078 92 3 3 chr15 41685415 41685726 -59694795 + AluY SINE Alu 1 311 0 2303 176 54 54 chr15 41685726 41685788 -59694733 + MLT1D LTR MaLR 440 501 -4 3512 148 28 20 chr15 41686187 41686299 -59694222 - MER41B LTR ERV1 -27 608 498 2513 61 0 0 chr15 41686299 41686595 -59693926 + AluY SINE Alu 2 297 -14 3512 148 28 20 chr15 41686595 41687085 -59693436 - MER41B LTR ERV1 -137 498 1 730 193 29 29 chr15 41687336 41687476 -59693045 + AluJo SINE Alu 2 141 -171 801 156 7 37 chr15 41687820 41687955 -59692566 + FLAM_C SINE Alu 1 131 -2 2087 91 46 3 chr15 41688097 41688382 -59692139 - AluSx SINE Alu -15 297 1 2540 115 72 213 chr15 41688402 41688526 -59691995 - MER4D LTR ERV1 0 832 692 4621 116 8 0 chr15 41688526 41689155 -59691366 - MER41B LTR ERV1 -1 634 1 2540 115 72 213 chr15 41689155 41689299 -59691222 - MER4D LTR ERV1 -140 692 529 770 188 0 14 chr15 41689299 41689437 -59691084 + FLAM_C SINE Alu 6 141 -2 2540 115 72 213 chr15 41689437 41689514 -59691007 - MER4D LTR ERV1 -303 529 443 1927 118 0 49 chr15 41689514 41689819 -59690702 - AluSq SINE Alu -23 290 1 2540 115 72 213 chr15 41689819 41689830 -59690691 - MER4D LTR ERV1 -389 443 432 2155 118 3 3 chr15 41689830 41690126 -59690395 - AluSp SINE Alu -16 297 2 2540 115 72 213 chr15 41690126 41690678 -59689843 - MER4D LTR ERV1 -400 432 1 1029 227 140 12 chr15 41690798 41691120 -59689401 - MLT1D LTR MaLR -13 492 130 720 111 10 0 chr15 41691121 41691220 -59689301 - AluSg/x SINE Alu -20 289 190 545 195 70 8 chr15 41691220 41691348 -59689173 - MLT1D LTR MaLR -367 138 3 1290 128 41 0 chr15 41692846 41693042 -59687479 + MER105 DNA DNA 1 204 0 189 340 83 13 chr15 41693542 41693698 -59686823 + L2 LINE L2 2712 2878 -436 1139 237 128 11 chr15 41693792 41694150 -59686371 + L1MC4a LINE L1 5511 5910 -1898 274 330 125 61 chr15 41694345 41694609 -59685912 + L2 LINE L2 2992 3272 0 189 0 0 0 chr15 41695065 41695086 -59685435 + (TC)n Simple_repeat Simple_repeat 2 22 0 29 0 0 0 chr15 41695220 41695249 -59685272 + AT_rich Low_complexity Low_complexity 1 29 0 2099 143 0 0 chr15 41695300 41695594 -59684927 - AluSx SINE Alu -13 299 6 24 0 0 0 chr15 41696304 41696328 -59684193 + AT_rich Low_complexity Low_complexity 1 24 0 1156 134 0 0 chr15 41696331 41696488 -59684033 - AluJo/FRAM SINE Alu -9 293 137 523 173 0 0 chr15 41696490 41696565 -59683956 - AluJ/FLAM SINE Alu -236 76 2 857 50 0 0 chr15 41696875 41696974 -59683547 + HY3 scRNA scRNA 1 99 -2 21 0 0 0 chr15 41696974 41696995 -59683526 + AT_rich Low_complexity Low_complexity 1 21 0 710 126 87 0 chr15 41698005 41698108 -59682413 + AluSq/x SINE Alu 2 113 -200 2360 211 26 4 chr15 41698230 41698738 -59681783 - L1M4 LINE L1 -2022 4124 3606 303 185 0 19 chr15 41698739 41698793 -59681728 - MER44D DNA MER2_type 0 609 557 * 580 143 271 0 chr15 41698789 41698929 -59681592 - MER46B DNA MER2_type -182 54 2 * 1426 138 38 50 chr15 41698929 41699187 -59681334 - MER44D DNA MER2_type -80 529 5 1522 247 44 7 chr15 41699191 41699644 -59680877 - L1M4 LINE L1 -2540 3606 3137 216 0 0 0 chr15 41699757 41699781 -59680740 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 1604 158 14 64 chr15 41699788 41700085 -59680436 - AluJo SINE Alu -30 282 1 454 298 72 66 chr15 41700368 41700549 -59679972 - MIR3 SINE MIR -21 187 6 1873 156 0 17 chr15 41701322 41701624 -59678897 + AluJo SINE Alu 6 302 -10 778 189 0 15 chr15 41701977 41702109 -59678412 + FLAM_C SINE Alu 2 131 -12 2368 95 0 16 chr15 41703464 41703780 -59676741 - AluSq SINE Alu -2 311 1 776 178 0 0 chr15 41703877 41703995 -59676526 - FLAM_C SINE Alu -24 119 2 23 0 0 0 chr15 41704615 41704638 -59675883 + AT_rich Low_complexity Low_complexity 1 23 0 2398 84 0 3 chr15 41705383 41705682 -59674839 + AluSc SINE Alu 1 298 -11 24 32 0 0 chr15 41706170 41706201 -59674320 + AT_rich Low_complexity Low_complexity 1 31 0 257 115 39 58 chr15 41706449 41706501 -59674020 + MER5B DNA MER1_type 126 176 -2 236 256 181 45 chr15 41706520 41706653 -59673868 - MER5B DNA MER1_type -4 174 24 180 205 0 26 chr15 41706618 41706657 -59673864 + MER5A DNA MER1_type 132 169 -20 * 808 200 0 0 chr15 41707074 41707243 -59673278 + FRAM SINE Alu 8 176 0 2171 97 7 10 chr15 41707788 41708096 -59672425 + AluSx SINE Alu 3 309 -3 270 86 0 78 chr15 41708104 41708348 -59672173 + AluSx SINE Alu 1 318 0 21 0 0 0 chr15 41708545 41708566 -59671955 + AT_rich Low_complexity Low_complexity 1 21 0 1074 44 0 0 chr15 41708705 41708840 -59671681 - AluY SINE Alu -13 298 164 217 67 22 22 chr15 41708969 41709014 -59671507 + (TATAA)n Simple_repeat Simple_repeat 5 49 0 313 235 40 98 chr15 41709014 41709164 -59671357 + L1MC4 LINE L1 6595 6705 -1337 193 29 59 0 chr15 41709165 41709199 -59671322 + (TA)n Simple_repeat Simple_repeat 2 37 0 209 135 58 10 chr15 41709340 41709438 -59671083 + (TA)n Simple_repeat Simple_repeat 2 105 0 2242 65 0 14 chr15 41709438 41709732 -59670789 - AluY SINE Alu -21 290 1 748 162 0 0 chr15 41709776 41709893 -59670628 - AluJb SINE Alu -194 118 2 967 267 89 11 chr15 41709973 41710254 -59670267 - LTR16B LTR ERVL -161 303 1 617 230 155 0 chr15 41711388 41711562 -59668959 + MIR SINE MIR 54 254 -8 1639 124 69 4 chr15 41712674 41712949 -59667572 + AluSg SINE Alu 1 293 -17 2067 125 38 3 chr15 41713500 41713820 -59666701 + MLT2D LTR ERVL 1 331 -83 1111 78 13 0 chr15 41713879 41714033 -59666488 + AluSc SINE Alu 149 304 -5 375 230 36 50 chr15 41714076 41714215 -59666306 - LTR47B LTR ERVL -27 416 280 391 307 22 17 chr15 41715109 41715288 -59665233 + CT-rich Low_complexity Low_complexity 1 180 0 308 185 31 31 chr15 41715322 41715452 -59665069 + CT-rich Low_complexity Low_complexity 4 133 0 209 180 20 0 chr15 41715460 41715510 -59665011 + C-rich Low_complexity Low_complexity 5 55 0 * 663 150 42 12 chr15 41715506 41715673 -59664848 + CT-rich Low_complexity Low_complexity 4 175 0 224 71 0 0 chr15 41715673 41715701 -59664820 + (TCCCC)n Simple_repeat Simple_repeat 4 31 0 811 141 13 47 chr15 41715704 41715853 -59664668 - FRAM SINE Alu -40 136 1 2163 109 0 3 chr15 41716472 41716776 -59663745 - AluSg SINE Alu -1 309 7 277 333 100 25 chr15 41716888 41717128 -59663393 - L2 LINE L2 0 3272 3015 1085 149 0 26 chr15 41717668 41717863 -59662658 + AluSg/x SINE Alu 111 300 -12 243 0 0 0 chr15 41717864 41717891 -59662630 + (TA)n Simple_repeat Simple_repeat 2 28 0 268 188 0 0 chr15 41718016 41718064 -59662457 + MER20B DNA MER1_type 735 782 -1 1526 171 27 104 chr15 41719436 41719509 -59661012 - Charlie4a DNA MER1_type -1456 505 428 1978 83 25 0 chr15 41719509 41719786 -59660735 - AluSx SINE Alu -22 290 7 1526 171 27 104 chr15 41719786 41720059 -59660462 - Charlie4a DNA MER1_type -1533 428 204 2290 95 0 0 chr15 41720059 41720365 -59660156 - AluSc SINE Alu -3 306 1 1526 171 27 104 chr15 41720365 41720496 -59660025 - Charlie4a DNA MER1_type -1757 204 64 1449 144 11 23 chr15 41720652 41720915 -59659606 - AluSx SINE Alu -16 296 37 234 229 21 0 chr15 41720948 41720996 -59659525 + MIR SINE MIR 106 154 -108 447 200 0 0 chr15 41721895 41721975 -59658546 + MLT1B LTR MaLR 15 94 -296 752 161 0 17 chr15 41721983 41722101 -59658420 + FLAM_A SINE Alu 8 123 -19 1897 153 0 13 chr15 41722106 41722420 -59658101 + AluSx SINE Alu 1 310 -2 1404 214 25 18 chr15 41722424 41722709 -59657812 + MLT1B LTR MaLR 104 390 0 195 306 51 10 chr15 41723542 41723640 -59656881 - MIR3 SINE MIR -24 184 83 406 182 149 25 chr15 41723642 41723763 -59656758 + MIR SINE MIR 119 254 -8 219 396 10 0 chr15 41723943 41724039 -59656482 - MIR3 SINE MIR -3 205 109 256 309 15 0 chr15 41725705 41725773 -59654748 + L2 LINE L2 3188 3256 -16 854 288 105 16 chr15 41725882 41726188 -59654333 - MER102b DNA MER1_type -7 334 2 213 344 174 26 chr15 41726345 41726615 -59653906 + L2 LINE L2 2329 2638 -676 208 237 136 0 chr15 41726801 41726860 -59653661 + L2 LINE L2 3237 3303 -10 2158 112 0 0 chr15 41726864 41727160 -59653361 - AluY SINE Alu -15 296 1 2226 86 7 7 chr15 41727750 41728051 -59652470 - AluSx SINE Alu -11 301 1 2146 217 46 37 chr15 41728170 41728732 -59651789 - MER74B LTR ERVL 0 622 56 1359 233 90 33 chr15 41729013 41729434 -59651087 + MLT2B1 LTR ERVL 1 445 -75 593 179 41 48 chr15 41729676 41729821 -59650700 + MER69 DNA AcHobo 2383 2526 0 349 230 58 35 chr15 41730036 41730123 -59650398 + MIR SINE MIR 56 144 -64 557 241 73 35 chr15 41730370 41730602 -59649919 - L1MC5 LINE L1 -56 7905 7665 1728 100 4 0 chr15 41730672 41730911 -59649610 + AluSq SINE Alu 41 280 -33 189 0 0 0 chr15 41730917 41730938 -59649583 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2048 118 0 0 chr15 41730994 41731290 -59649231 - AluSg SINE Alu -14 296 1 2089 107 0 23 chr15 41732288 41732597 -59647924 - AluSx SINE Alu -10 302 1 1632 146 46 17 chr15 41732655 41732957 -59647564 - AluSx SINE Alu -1 311 1 497 216 0 45 chr15 41732957 41733068 -59647453 - AluSg/x SINE Alu -20 292 187 3396 144 204 30 chr15 41733068 41733768 -59646753 - LTR12 LTR ERV1 0 826 5 2457 183 30 27 chr15 41733784 41734384 -59646137 - pTR5 LTR ERV1 -1094 1344 743 1120 141 0 45 chr15 41734384 41734583 -59645938 - AluJo SINE Alu -122 190 1 216 97 0 0 chr15 41734660 41734691 -59645830 + (TTC)n Simple_repeat Simple_repeat 3 33 0 1749 145 54 7 chr15 41734693 41734989 -59645532 - AluSx SINE Alu -2 310 1 228 35 0 0 chr15 41735141 41735170 -59645351 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1297 167 0 50 chr15 41735170 41735451 -59645070 - AluSx SINE Alu -32 280 14 243 0 0 0 chr15 41735455 41735482 -59645039 + (T)n Simple_repeat Simple_repeat 1 27 0 1842 117 52 7 chr15 41735507 41735797 -59644724 + AluSx SINE Alu 1 303 -9 1241 209 48 84 chr15 41735954 41736650 -59643871 - MER21B LTR ERV1 -125 738 1 1655 146 75 0 chr15 41736673 41736953 -59643568 + AluSx SINE Alu 1 301 -11 3661 122 80 16 chr15 41737422 41737997 -59642524 - LTR9 LTR ERV1 0 612 1 2220 89 3 13 chr15 41738501 41738804 -59641717 - AluSg SINE Alu -10 300 1 600 264 38 61 chr15 41738889 41739101 -59641420 + MIR SINE MIR 1 207 -55 1416 186 38 7 chr15 41739121 41739411 -59641110 - AluJb SINE Alu -13 299 1 243 239 269 37 chr15 41739416 41739612 -59640909 - L1ME4a LINE L1 -21 6100 5951 2118 121 0 9 chr15 41739612 41739927 -59640594 - AluSx SINE Alu 0 312 1 243 239 269 37 chr15 41739927 41740027 -59640494 - L1ME4a LINE L1 -170 5951 5735 358 198 18 36 chr15 41740154 41740265 -59640256 - L1ME4a LINE L1 -401 5720 5612 339 65 0 0 chr15 41742003 41742049 -59638472 + (TG)n Simple_repeat Simple_repeat 2 47 0 2039 200 10 45 chr15 41742203 41742687 -59637834 - MLT1C LTR MaLR 0 467 1 2086 115 0 29 chr15 41743819 41744133 -59636388 + AluSx SINE Alu 2 306 -6 223 278 56 28 chr15 41745759 41745831 -59634690 - L3 LINE CR1 -4 1573 1500 2029 117 3 3 chr15 41745847 41746137 -59634384 - AluSx SINE Alu -22 290 1 222 293 12 12 chr15 41746423 41746505 -59634016 + MIR SINE MIR 84 165 -97 293 304 83 24 chr15 41747772 41747833 -59632688 - MIR SINE MIR 0 262 206 1887 128 24 13 chr15 41747833 41748131 -59632390 - AluSq SINE Alu -12 301 1 293 304 83 24 chr15 41748131 41748237 -59632284 - MIR SINE MIR -56 206 85 240 224 0 17 chr15 41748568 41748626 -59631895 + CT-rich Low_complexity Low_complexity 2 58 0 21 36 0 0 chr15 41749037 41749065 -59631456 + AT_rich Low_complexity Low_complexity 1 28 0 780 283 69 12 chr15 41749421 41749551 -59630970 - MIR SINE MIR 0 262 141 1236 121 16 0 chr15 41749551 41749733 -59630788 - MER5A DNA MER1_type -4 185 1 780 283 69 12 chr15 41749733 41749849 -59630672 - MIR SINE MIR -121 141 2 331 286 92 74 chr15 41750586 41750803 -59629718 - L1ME4a LINE L1 -21 6100 5880 2240 93 0 10 chr15 41750830 41751130 -59629391 + AluSp SINE Alu 2 298 -15 2027 123 0 16 chr15 41752058 41752374 -59628147 - AluSx SINE Alu -1 311 1 391 270 0 0 chr15 41752379 41752468 -59628053 + L2 LINE L2 3225 3313 0 2290 93 0 0 chr15 41753434 41753736 -59626785 + AluSx SINE Alu 1 302 -10 251 198 54 90 chr15 41753736 41753847 -59626674 - L1MC4 LINE L1 -14 8028 7922 327 146 0 0 chr15 41753850 41753905 -59626616 + (TTCC)n Simple_repeat Simple_repeat 2 56 0 2788 231 53 56 chr15 41753956 41754367 -59626154 - L1MC4 LINE L1 -166 7876 7465 1871 124 3 24 chr15 41754367 41754682 -59625839 - AluSx SINE Alu 0 309 1 2788 231 53 56 chr15 41754682 41755319 -59625202 - L1MC4 LINE L1 -577 7465 6830 574 251 86 6 chr15 41755921 41756084 -59624437 - MER5B DNA MER1_type -2 176 1 1597 88 5 0 chr15 41756097 41756312 -59624209 + AluSg1 SINE Alu 1 216 -93 412 286 11 0 chr15 41756312 41756403 -59624118 - MIR3 SINE MIR -25 183 92 488 308 38 27 chr15 41756450 41756635 -59623886 + MER5A DNA MER1_type 1 187 -2 1631 173 3 25 chr15 41756751 41757069 -59623452 - AluJb SINE Alu -1 311 1 336 284 7 92 chr15 41757174 41757315 -59623206 - MER58A DNA MER1_type 0 129 1 1340 263 47 32 chr15 41757349 41757591 -59622930 + ERVL LTR ERVL 1688 1940 -3056 2215 80 10 10 chr15 41757591 41757890 -59622631 + AluSx SINE Alu 1 299 -13 1340 263 47 32 chr15 41757890 41758054 -59622467 + ERVL LTR ERVL 1940 2100 -2896 461 245 19 0 chr15 41758103 41758209 -59622312 - ERVL LTR ERVL -2597 3167 3060 197 266 0 96 chr15 41758211 41758305 -59622216 + L3 LINE CR1 126 210 -1367 969 321 13 13 chr15 41758305 41758623 -59621898 - ERVL LTR ERVL -2072 2924 2607 1627 305 26 67 chr15 41758628 41759707 -59620814 + ERVL LTR ERVL 4428 4979 -17 690 253 40 6 chr15 41759725 41759899 -59620622 + LTR16B LTR ERVL 1 180 -284 683 212 133 0 chr15 41759910 41760061 -59620460 - MER45A DNA AcHobo -7 171 1 432 332 78 0 chr15 41760098 41760315 -59620206 + LTR16B LTR ERVL 231 464 0 2095 99 20 3 chr15 41760622 41760925 -59619596 + AluSp SINE Alu 1 308 -5 11312 61 0 13 chr15 41760976 41762841 -59617680 + L1PA6 LINE L1 3903 5773 -381 2044 85 4 0 chr15 41762841 41763111 -59617410 + AluY SINE Alu 35 305 -6 11312 61 0 13 chr15 41763111 41763489 -59617032 + L1PA6 LINE L1 5773 6154 0 772 100 7 100 chr15 41763540 41763624 -59616897 - MSTB1 LTR MaLR -305 127 60 1848 153 3 0 chr15 41763624 41763912 -59616609 - AluSx SINE Alu -21 291 3 772 100 7 100 chr15 41763912 41763967 -59616554 - MSTB1 LTR MaLR -372 60 1 4983 126 26 97 chr15 41763967 41764829 -59615692 - L1M4c LINE L1 -4452 1932 1011 1712 141 31 10 chr15 41764829 41765119 -59615402 - AluSx SINE Alu -16 296 1 4983 126 26 97 chr15 41765119 41765244 -59615277 - L1M4c LINE L1 -5373 1011 1032 366 236 209 0 chr15 41765244 41765354 -59615167 - FLAM_A SINE Alu 0 133 1 4983 126 26 97 chr15 41765354 41765500 -59615021 - L1M4c LINE L1 -5351 1033 878 1126 112 41 6 chr15 41765614 41765783 -59614738 - AluSx SINE Alu -137 175 1 384 271 23 31 chr15 41765783 41765912 -59614609 - L1M4c LINE L1 -5308 1076 949 366 236 209 0 chr15 41765912 41766022 -59614499 - FLAM_A SINE Alu 0 133 1 4452 148 22 12 chr15 41766022 41766781 -59613740 - L1M4c LINE L1 -5353 1031 265 1398 175 0 103 chr15 41766788 41766942 -59613579 - AluJb SINE Alu -25 287 181 2006 147 0 0 chr15 41766942 41767248 -59613273 - AluSx SINE Alu -6 306 1 1398 175 0 103 chr15 41767248 41767413 -59613108 - AluJb SINE Alu -131 181 1 1752 171 7 3 chr15 41767616 41767925 -59612596 - AluJb SINE Alu -2 310 1 1781 136 3 44 chr15 41768151 41768473 -59612048 - AluSx SINE Alu 0 310 1 299 258 45 0 chr15 41768935 41768956 -59611565 + LTR67 LTR ERVL 461 480 -77 2124 110 3 0 chr15 41768956 41769256 -59611265 - AluSg1 SINE Alu -8 301 1 299 258 45 0 chr15 41769256 41769323 -59611198 + LTR67 LTR ERVL 480 553 -4 2728 85 3 0 chr15 41769535 41769889 -59610632 + THE1A LTR MaLR 1 355 0 271 314 0 66 chr15 41770467 41770588 -59609933 + L2 LINE L2 3160 3272 0 255 170 0 0 chr15 41770761 41770808 -59609713 + CT-rich Low_complexity Low_complexity 2 48 0 2117 87 7 7 chr15 41770808 41771094 -59609427 - AluSg SINE Alu -24 286 1 424 220 76 138 chr15 41771256 41771396 -59609125 + MER20B DNA MER1_type 36 150 -633 1566 173 0 69 chr15 41771396 41771731 -59608790 + AluJo SINE Alu 1 312 0 424 220 76 138 chr15 41771731 41771881 -59608640 + MER20B DNA MER1_type 150 308 -475 2078 115 0 29 chr15 41772769 41773082 -59607439 + AluSx SINE Alu 2 305 -7 223 278 56 28 chr15 41774707 41774779 -59605742 - L3 LINE CR1 -4 1573 1500 2029 117 3 3 chr15 41774795 41775085 -59605436 - AluSx SINE Alu -22 290 1 1730 170 26 7 chr15 41775253 41775559 -59604962 + AluJo SINE Alu 1 312 0 757 237 7 75 chr15 41775615 41775894 -59604627 - L2 LINE L2 0 3313 3054 275 336 56 0 chr15 41775904 41776011 -59604510 - L3 LINE CR1 -127 1450 1338 984 307 113 38 chr15 41776018 41776575 -59603946 - L3 LINE CR1 -165 1412 814 34 0 0 0 chr15 41776593 41776627 -59603894 + AT_rich Low_complexity Low_complexity 1 34 0 325 336 229 29 chr15 41777112 41777354 -59603167 - L3 LINE CR1 -762 815 623 2276 97 0 0 chr15 41777354 41777653 -59602868 - AluSx SINE Alu -13 299 1 325 336 229 29 chr15 41777653 41777755 -59602766 - L3 LINE CR1 -954 623 402 1200 269 113 26 chr15 41777783 41778218 -59602303 + L2 LINE L2 2798 3268 -4 749 176 13 39 chr15 41778218 41778371 -59602150 + MIR SINE MIR 114 262 0 216 203 51 51 chr15 41778398 41778457 -59602064 - L2 LINE L2 -17 3296 3238 309 109 0 0 chr15 41778492 41778538 -59601983 + (TCCCC)n Simple_repeat Simple_repeat 5 50 0 1374 146 4 0 chr15 41778640 41778866 -59601655 + AluSg/x SINE Alu 84 310 -2 306 243 103 9 chr15 41778866 41778973 -59601548 + MER20B DNA MER1_type 406 522 -261 1898 134 0 16 chr15 41779036 41779341 -59601180 + AluSx SINE Alu 1 300 -12 268 188 0 0 chr15 41779484 41779532 -59600989 + MER20B DNA MER1_type 735 782 -1 1546 175 3 18 chr15 41780495 41780781 -59599740 - AluJb SINE Alu -30 282 1 1462 136 65 39 chr15 41780992 41781271 -59599250 + AluJo SINE Alu 1 286 -26 2051 125 3 0 chr15 41782811 41783108 -59597413 + AluSx SINE Alu 1 298 -14 428 269 67 8 chr15 41783770 41783904 -59596617 - L1MC4 LINE L1 0 8042 7901 250 176 29 0 chr15 41783904 41783958 -59596563 + (TATG)n Simple_repeat Simple_repeat 2 60 -11 2084 116 0 22 chr15 41783958 41784278 -59596243 - AluSq SINE Alu 0 313 1 250 176 29 0 chr15 41784278 41784291 -59596230 + (TATG)n Simple_repeat Simple_repeat 60 71 0 731 269 31 22 chr15 41784292 41784658 -59595863 - L1MD3 LINE L1 -204 7791 7342 189 0 0 0 chr15 41784658 41784679 -59595842 + (TC)n Simple_repeat Simple_repeat 2 22 0 731 269 31 22 chr15 41784679 41784751 -59595770 - L1MD3 LINE L1 -653 7342 7272 235 317 29 0 chr15 41785017 41785121 -59595400 - L1MD3 LINE L1 -2013 5795 5689 424 28 19 271 chr15 41785131 41785238 -59595283 - MADE1 DNA Mariner 0 80 1 1594 180 13 36 chr15 41785905 41786211 -59594310 - AluJo SINE Alu -13 299 1 25 0 0 0 chr15 41786213 41786238 -59594283 + AT_rich Low_complexity Low_complexity 1 25 0 2092 107 0 0 chr15 41786238 41786519 -59594002 - AluSx SINE Alu -31 281 1 261 264 19 0 chr15 41786612 41786665 -59593856 + MER58 DNA MER1_type 7 60 -2360 * 350 143 286 10 chr15 41786664 41786762 -59593759 + MER58 DNA MER1_type 2296 2420 0 1752 133 35 3 chr15 41786881 41787167 -59593354 - AluSg SINE Alu -15 295 1 1800 133 54 0 chr15 41787197 41787475 -59593046 - AluSx SINE Alu -15 297 5 244 268 91 50 chr15 41787501 41787699 -59592822 + L1MC5 LINE L1 7615 7820 -141 228 86 0 0 chr15 41787799 41787834 -59592687 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 278 256 0 0 chr15 41787857 41787943 -59592578 + (TA)n Simple_repeat Simple_repeat 2 87 0 2343 86 3 3 chr15 41788567 41788880 -59591641 - AluSp SINE Alu 0 313 1 2122 113 0 7 chr15 41789485 41789787 -59590734 - AluSx SINE Alu -12 300 1 273 279 49 0 chr15 41789823 41789884 -59590637 + MIR SINE MIR 11 74 -188 383 204 150 84 chr15 41789946 41790113 -59590408 + MIR SINE MIR 72 249 -13 1838 120 57 7 chr15 41790150 41790433 -59590088 - AluSg SINE Alu -13 297 1 1174 157 27 49 chr15 41790512 41790735 -59589786 + MER20 DNA MER1_type 1 218 -1 190 253 36 48 chr15 41790826 41790909 -59589612 - MIR3 SINE MIR -113 95 14 1623 258 46 2 chr15 41791552 41791986 -59588535 + LTR16B LTR ERVL 5 457 -7 2444 55 0 0 chr15 41792272 41792564 -59587957 - AluY SINE Alu -15 296 5 471 257 0 18 chr15 41792680 41792789 -59587732 - L2 LINE L2 0 3313 3207 651 215 23 0 chr15 41792973 41793103 -59587418 - MER94 DNA DNA 0 134 2 2033 131 0 10 chr15 41794176 41794488 -59586033 - AluSx SINE Alu -3 309 1 1639 123 70 42 chr15 41794909 41795194 -59585327 - AluSx SINE Alu -19 293 1 379 269 129 26 chr15 41795884 41796077 -59584444 + MIR SINE MIR 21 233 -29 365 336 25 0 chr15 41796306 41796425 -59584096 + MIR SINE MIR 2 123 -139 972 189 0 0 chr15 41796425 41796594 -59583927 - AluSg/x SINE Alu -10 302 134 543 92 0 0 chr15 41796603 41796690 -59583831 + (CCTG)n Simple_repeat Simple_repeat 2 88 0 1445 145 40 0 chr15 41796690 41796928 -59583593 - AluSq SINE Alu -7 306 56 546 211 8 17 chr15 41796928 41797170 -59583351 + CT-rich Low_complexity Low_complexity 1 239 0 212 163 0 20 chr15 41797195 41797244 -59583277 + CT-rich Low_complexity Low_complexity 1 48 0 357 281 0 11 chr15 41797251 41797263 -59583258 + MIR SINE MIR 109 120 -142 1477 188 31 3 chr15 41797263 41797551 -59582970 - AluJo SINE Alu 0 312 17 357 281 0 11 chr15 41797551 41797627 -59582894 + MIR SINE MIR 120 196 -66 1816 102 6 80 chr15 41797903 41798217 -59582304 + AluSx SINE Alu 1 291 -21 888 251 21 0 chr15 41798538 41798729 -59581792 - MLT1K LTR MaLR -3 585 391 1952 122 14 3 chr15 41798731 41799026 -59581495 - AluSx SINE Alu -14 298 1 473 193 9 37 chr15 41799216 41799325 -59581196 + L2 LINE L2 3207 3312 -1 248 266 62 62 chr15 41799443 41799556 -59580965 - L2 LINE L2 -258 3014 2902 855 226 33 24 chr15 41799640 41799852 -59580669 + LTR33 LTR ERVL 19 232 -289 674 174 38 136 chr15 41799853 41799894 -59580627 + MER5C DNA MER1_type 62 105 -219 2059 138 0 3 chr15 41799894 41800206 -59580315 + AluSx SINE Alu 1 311 -1 674 174 38 136 chr15 41800206 41800270 -59580251 + MER5C DNA MER1_type 105 174 -150 1983 140 46 17 chr15 41800270 41800619 -59579902 + MER46B DNA MER2_type 3 236 0 674 174 38 136 chr15 41800619 41800799 -59579722 + MER5C DNA MER1_type 174 320 -4 1155 204 23 9 chr15 41801303 41801523 -59578998 + MER58A DNA MER1_type 2 224 0 1600 217 21 24 chr15 41802923 41803296 -59577225 + MLT1A2 LTR MaLR 1 372 -2 22 0 0 0 chr15 41803603 41803625 -59576896 + AT_rich Low_complexity Low_complexity 1 22 0 404 325 84 10 chr15 41803665 41803989 -59576532 - MLT1K LTR MaLR -114 474 81 200 262 229 16 chr15 41804064 41804186 -59576335 - L2 LINE L2 0 3272 3125 342 241 0 64 chr15 41805002 41805189 -59575332 + C-rich Low_complexity Low_complexity 5 179 0 22 0 0 0 chr15 41805201 41805223 -59575298 + GC_rich Low_complexity Low_complexity 1 22 0 481 302 109 5 chr15 41805709 41805901 -59574620 - MIR SINE MIR -2 260 49 269 290 19 9 chr15 41806003 41806110 -59574411 + CT-rich Low_complexity Low_complexity 1 108 0 1877 115 3 48 chr15 41806530 41806700 -59573821 - AluSx SINE Alu -12 300 149 1767 113 55 52 chr15 41806700 41807009 -59573512 - AluSg SINE Alu 0 310 1 1877 115 3 48 chr15 41807009 41807152 -59573369 - AluSx SINE Alu -163 149 1 192 308 96 19 chr15 41807392 41807496 -59573025 - MER5B DNA MER1_type -3 175 64 1342 344 36 21 chr15 41807676 41808036 -59572485 + HERVL LTR ERVL 3724 4077 -1577 4489 98 31 0 chr15 41808036 41808650 -59571871 - MER41B LTR ERV1 0 635 3 1342 344 36 21 chr15 41808650 41809106 -59571415 + HERVL LTR ERVL 4077 4565 -1089 204 185 62 74 chr15 41809572 41809653 -59570868 + MIR SINE MIR 183 262 0 417 224 24 48 chr15 41809813 41809938 -59570583 - L1MC4 LINE L1 0 8042 7921 2273 82 7 3 chr15 41809946 41810239 -59570282 - AluSq SINE Alu -19 294 1 255 161 11 23 chr15 41810288 41810375 -59570146 + (TA)n Simple_repeat Simple_repeat 2 87 0 939 263 43 40 chr15 41810488 41810838 -59569683 - L1MC4 LINE L1 -225 7817 7467 227 287 98 18 chr15 41811207 41811345 -59569176 - MIR SINE MIR -93 169 20 2553 80 3 0 chr15 41811483 41811794 -59568727 - AluSp SINE Alu -1 312 1 540 238 32 45 chr15 41811893 41812109 -59568412 - MLT1B LTR MaLR -165 263 1 2168 228 91 24 chr15 41812134 41812752 -59567769 - L1MC4 LINE L1 -524 7518 6860 397 191 21 0 chr15 41812752 41812846 -59567675 - L1MC4 LINE L1 -950 7092 6997 577 149 14 28 chr15 41813107 41813248 -59567273 + CT-rich Low_complexity Low_complexity 4 142 0 1898 110 61 0 chr15 41814368 41814632 -59565889 - AluSx SINE Alu -19 293 14 1536 233 12 0 chr15 41814686 41815016 -59565505 - MER58B DNA MER1_type 0 341 8 1077 152 94 0 chr15 41816199 41816390 -59564131 + L1PA16 LINE L1 5434 5642 -524 2034 136 46 15 chr15 41816391 41816715 -59563806 + MSTB LTR MaLR 1 334 -92 3133 141 28 20 chr15 41816719 41817257 -59563264 + L1PA16 LINE L1 5624 6165 -1 191 216 0 0 chr15 41817420 41817457 -59563064 - MIR3 SINE MIR -49 159 123 642 277 135 30 chr15 41817474 41817911 -59562610 + MER90 LTR ERV1 78 561 -14 5916 116 103 16 chr15 41818635 41819648 -59560873 + MER52C LTR ERV1 3 1103 -175 2477 55 0 7 chr15 41819689 41819979 -59560542 - AluY SINE Alu -23 288 1 283 327 9 19 chr15 41820212 41820319 -59560202 + G-rich Low_complexity Low_complexity 2 107 0 349 279 22 45 chr15 41820409 41820588 -59559933 + GA-rich Low_complexity Low_complexity 1 175 0 1093 63 0 53 chr15 41820802 41820859 -59559662 + (TTCC)n Simple_repeat Simple_repeat 1 234 0 1093 63 0 53 chr15 41820859 41821049 -59559472 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 561 267 91 24 chr15 41821109 41821319 -59559202 - L2 LINE L2 -17 3296 3073 185 75 75 0 chr15 41821628 41821681 -59558840 + (TA)n Simple_repeat Simple_repeat 1 57 0 527 143 0 38 chr15 41822026 41822131 -59558390 - L1PA11 LINE L1 -3 6171 6071 228 143 41 20 chr15 41823619 41823668 -59556853 - MSTC LTR MaLR 0 428 379 468 306 47 30 chr15 41824182 41824342 -59556179 + MLT1J2 LTR MaLR 1 168 -282 1598 144 125 44 chr15 41824342 41824703 -59555818 + MLT1B LTR MaLR 1 390 0 468 306 47 30 chr15 41824703 41824777 -59555744 + MLT1J2 LTR MaLR 168 239 -211 501 288 49 6 chr15 41825643 41825806 -59554715 - MER117 DNA MER1_type -26 171 2 403 119 0 0 chr15 41826088 41826155 -59554366 - Alu SINE Alu -12 300 234 297 0 0 0 chr15 41826161 41826187 -59554334 + (TA)n Simple_repeat Simple_repeat 1 59 0 297 0 0 0 chr15 41826187 41826220 -59554301 + (TA)n Simple_repeat Simple_repeat 1 33 0 2071 153 3 3 chr15 41826303 41826611 -59553910 + AluJb SINE Alu 1 308 -4 2124 133 0 3 chr15 41826741 41827035 -59553486 - AluSx SINE Alu -19 293 1 224 182 0 0 chr15 41828798 41828842 -59551679 - L2 LINE L2 -1904 1410 1367 2198 107 10 3 chr15 41830097 41830397 -59550124 + AluSp SINE Alu 1 302 -11 1468 214 104 24 chr15 41830454 41830875 -59549646 + MSTB2 LTR MaLR 3 457 0 1754 219 87 57 chr15 41832064 41832563 -59547958 + MLT1E LTR MaLR 2 522 -71 2467 86 3 0 chr15 41832563 41832867 -59547654 - AluSc SINE Alu -4 305 1 1754 219 87 57 chr15 41832867 41832942 -59547579 + MLT1E LTR MaLR 522 593 0 371 276 118 8 chr15 41833704 41833831 -59546690 + MIR SINE MIR 11 151 -111 271 329 37 19 chr15 41833953 41834114 -59546407 - L2 LINE L2 -558 2756 2593 3195 193 63 19 chr15 41834146 41834872 -59545649 - L1MC4 LINE L1 -8 8034 7277 213 213 295 0 chr15 41835080 41835141 -59545380 - MIR3 SINE MIR -49 159 81 2076 181 16 5 chr15 41835259 41835646 -59544875 + L1MC1 LINE L1 5834 6224 -109 768 120 98 15 chr15 41835688 41835821 -59544700 + L1MC1 LINE L1 6190 6333 0 1363 100 4 1 chr15 41835832 41836094 -59544427 + AluSx SINE Alu 2 302 0 249 275 0 14 chr15 41837103 41837172 -59543349 + GA-rich Low_complexity Low_complexity 3 70 0 2789 135 34 46 chr15 41837422 41837918 -59542603 - LTR42 LTR ERVL 0 495 6 565 221 13 57 chr15 41838123 41838281 -59542240 + MER5B DNA MER1_type 4 154 -24 4724 182 63 34 chr15 41838982 41839506 -59541015 - MER45B DNA AcHobo -551 1030 523 1645 93 19 0 chr15 41839506 41839720 -59540801 - AluSg/x SINE Alu -18 292 75 4724 182 63 34 chr15 41839720 41840196 -59540325 - MER45B DNA AcHobo -1058 523 1 21 36 0 0 chr15 41840256 41840284 -59540237 + AT_rich Low_complexity Low_complexity 1 28 0 581 275 23 1 chr15 41843012 41843189 -59537332 + MIR SINE MIR 34 212 -50 443 188 23 128 chr15 41843704 41843793 -59536728 - Charlie8 DNA MER1_type -2209 208 136 2146 127 7 0 chr15 41843793 41844084 -59536437 - AluSx SINE Alu -19 293 1 443 188 23 128 chr15 41844084 41844127 -59536394 - Charlie8 DNA MER1_type -2281 136 90 1075 243 78 10 chr15 41844736 41845045 -59535476 - MER46C DNA MER2_type -1 337 8 399 230 0 0 chr15 41845586 41845699 -59534822 + (TGGA)n Simple_repeat Simple_repeat 2 114 0 757 204 104 23 chr15 41848223 41848443 -59532078 - MLT1C LTR MaLR -224 243 6 234 91 0 0 chr15 41849236 41849269 -59531252 + (CA)n Simple_repeat Simple_repeat 2 34 0 1921 145 34 90 chr15 41849359 41849458 -59531063 + MLT1B LTR MaLR 1 104 -286 4950 80 11 3 chr15 41849458 41850106 -59530415 + L1PA11 LINE L1 5522 6174 0 1921 145 34 90 chr15 41850106 41850419 -59530102 + MLT1B LTR MaLR 104 390 0 259 183 9 0 chr15 41850442 41850502 -59530019 + MIR SINE MIR 93 146 -62 23 0 0 0 chr15 41850537 41850560 -59529961 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr15 41850567 41850591 -59529930 + AT_rich Low_complexity Low_complexity 1 24 0 867 173 19 12 chr15 41851189 41851351 -59529170 + MER20 DNA MER1_type 57 219 0 2102 179 31 20 chr15 41852537 41852708 -59527813 + MSTD LTR MaLR 1 169 -227 2547 75 0 0 chr15 41852708 41853014 -59527507 - AluY SINE Alu -4 307 2 2102 179 31 20 chr15 41853014 41853234 -59527287 + MSTD LTR MaLR 169 396 0 180 225 0 0 chr15 41853936 41853976 -59526545 + MIR SINE MIR 34 73 -135 258 294 147 0 chr15 41854230 41854339 -59526182 + L2 LINE L2 3189 3313 0 514 191 147 45 chr15 41855324 41855481 -59525040 + MIR SINE MIR 1 173 -89 722 251 208 55 chr15 41855483 41855954 -59524567 - MLT1H LTR MaLR -2 547 5 2374 166 85 15 chr15 41856589 41857284 -59523237 - L1MA9 LINE L1 -524 5788 5043 2550 141 43 47 chr15 41857288 41857738 -59522783 + L1MA9 LINE L1 5777 6226 -86 2321 80 3 3 chr15 41857738 41858025 -59522496 + AluSp SINE Alu 1 287 -26 2550 141 43 47 chr15 41858025 41858112 -59522409 + L1MA9 LINE L1 6226 6312 0 598 306 29 8 chr15 41858124 41858366 -59522155 - L1ME4a LINE L1 -259 5862 5616 2194 246 62 64 chr15 41858575 41859642 -59520879 - L1ME3A LINE L1 -37 6133 5076 654 168 106 55 chr15 41859647 41859962 -59520559 - MLT1A1 LTR MaLR 0 365 4 526 317 15 19 chr15 41859976 41860247 -59520274 - L1ME3A LINE L1 -1089 5057 4788 823 210 54 0 chr15 41860342 41860509 -59520012 - L1M4 LINE L1 -503 5671 5496 33557 69 8 11 chr15 41860522 41864729 -59515792 - L1PA6 LINE L1 -11 6143 1956 2456 74 0 0 chr15 41864729 41865026 -59515495 - AluY SINE Alu -14 297 1 33557 69 8 11 chr15 41865026 41866094 -59514427 - L1PA6 LINE L1 -4198 1956 887 567 211 61 0 chr15 41866161 41866275 -59514246 - MLT1A1 LTR MaLR -77 288 168 1988 162 47 11 chr15 41866299 41866843 -59513678 - L1M4 LINE L1 -699 5475 4908 214 309 127 64 chr15 41867224 41867366 -59513155 - MER5A DNA MER1_type -28 161 1 196 333 76 0 chr15 41869508 41869574 -59510947 + L2 LINE L2 3221 3291 -22 248 298 125 0 chr15 41870866 41870970 -59509551 - L2 LINE L2 -9 3304 3188 420 269 176 0 chr15 41871643 41871825 -59508696 - L1ME4a LINE L1 -38 6083 5870 650 13 13 0 chr15 41871949 41872028 -59508493 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 225 0 0 0 chr15 41872405 41872430 -59508091 + (CA)n Simple_repeat Simple_repeat 2 26 0 488 207 111 7 chr15 41872432 41872567 -59507954 - LTR16A LTR ERVL -1 449 301 735 325 57 19 chr15 41872873 41873385 -59507136 - HERV16 LTR ERVL -75 5344 4788 345 260 12 83 chr15 41873566 41873735 -59506786 - HERV16 LTR ERVL -606 4390 4234 368 350 18 0 chr15 41873775 41873938 -59506583 + ERVL LTR ERVL 3375 3540 -2224 279 315 36 0 chr15 41873926 41874037 -59506484 - HERV16 LTR ERVL -2300 3354 3240 * 692 315 20 8 chr15 41874119 41874370 -59506151 - HERV16 LTR ERVL -2385 3269 3016 827 211 117 0 chr15 41874397 41874577 -59505944 + MER3 DNA MER1_type 9 209 0 1077 317 95 6 chr15 41874582 41875119 -59505402 - HERV16 LTR ERVL -2482 3003 2419 946 216 22 11 chr15 41875150 41875331 -59505190 + MER58A DNA MER1_type 42 224 0 2487 87 3 18 chr15 41875354 41875686 -59504835 + L1PA3 LINE L1 5829 6155 0 1808 151 3 55 chr15 41875748 41876059 -59504462 + AluJo SINE Alu 1 295 -17 3719 276 77 43 chr15 41876119 41877785 -59502736 - HERV16 LTR ERVL -2847 2149 353 2340 88 13 0 chr15 41877785 41878090 -59502431 - AluY SINE Alu -2 309 1 3719 276 77 43 chr15 41878090 41878239 -59502282 - HERV16 LTR ERVL -4643 353 210 726 237 133 0 chr15 41878775 41878986 -59501535 - MIR SINE MIR -21 241 3 1996 170 0 0 chr15 41879145 41879457 -59501064 + AluSx SINE Alu 1 312 0 276 272 174 11 chr15 41880497 41880589 -59499932 + L2 LINE L2 3157 3263 -9 249 309 45 0 chr15 41880812 41880922 -59499599 - L1ME4a LINE L1 -201 5920 5806 669 223 5 82 chr15 41880952 41881172 -59499349 + LTR33 LTR ERVL 13 215 -306 374 240 10 10 chr15 41881422 41881526 -59498995 - L1ME4a LINE L1 -401 5720 5617 2826 103 78 5 chr15 41881778 41882175 -59498346 - MSTA LTR MaLR -2 426 1 772 205 53 0 chr15 41882434 41882624 -59497897 - L1ME LINE L1 -3714 2366 2167 565 119 158 0 chr15 41882620 41882721 -59497800 - L1MA9 LINE L1 -170 6142 6026 * 901 166 53 81 chr15 41882658 41882905 -59497616 + L1MA9 LINE L1 6073 6312 0 1513 279 42 63 chr15 41883408 41883795 -59496726 - L1ME LINE L1 -5402 668 299 2915 9 0 6 chr15 41883795 41884115 -59496406 - AluYb8 SINE Alu 0 318 1 1513 279 42 63 chr15 41884115 41884398 -59496123 - L1ME LINE L1 -5771 299 12 358 323 0 0 chr15 41884521 41884620 -59495901 - MIR3 SINE MIR -16 192 94 693 255 21 80 chr15 41886800 41887215 -59493306 + MLT1H LTR MaLR 50 409 0 409 260 16 8 chr15 41887496 41887619 -59492902 + LTR67 LTR ERVL 434 557 0 450 252 200 14 chr15 41887737 41887947 -59492574 + MIR SINE MIR 4 252 -10 250 67 44 0 chr15 41887965 41888010 -59492511 + (ATG)n Simple_repeat Simple_repeat 3 49 0 183 186 23 47 chr15 41888047 41888090 -59492431 - MIR SINE MIR -163 99 58 283 250 71 62 chr15 41889448 41889560 -59490961 + MIR SINE MIR 94 206 -56 881 169 44 16 chr15 41890606 41890789 -59489732 + MER5A DNA MER1_type 2 189 0 781 296 21 4 chr15 41890789 41891029 -59489492 + LTR16C LTR ERVL 248 491 0 273 326 67 4 chr15 41891074 41891202 -59489319 - MIR SINE MIR -43 165 28 488 325 39 7 chr15 41891243 41891397 -59489124 + MIR SINE MIR 11 169 -93 236 274 14 14 chr15 41891465 41891538 -59488983 - MIR SINE MIR -71 191 119 209 385 22 0 chr15 41891828 41891919 -59488602 - MIR3 SINE MIR -24 184 92 1111 231 172 42 chr15 41892511 41893046 -59487475 - LTR48B LTR ERV1 0 644 5 2060 97 52 3 chr15 41893404 41893693 -59486828 - AluSq SINE Alu -10 303 1 267 283 9 9 chr15 41894510 41894616 -59485905 + GA-rich Low_complexity Low_complexity 1 106 0 189 0 0 0 chr15 41895024 41895045 -59485476 + (T)n Simple_repeat Simple_repeat 1 21 0 2681 39 0 0 chr15 41895100 41895406 -59485115 + AluY SINE Alu 1 306 -5 482 284 38 43 chr15 41895627 41895838 -59484683 - LTR67 LTR ERVL -7 550 341 527 242 56 6 chr15 41896178 41896339 -59484182 - L2 LINE L2 -519 2795 2627 257 209 81 12 chr15 41896395 41896481 -59484040 + L1MC4 LINE L1 6612 6703 -1339 819 153 0 0 chr15 41896510 41896628 -59483893 - FLAM_C SINE Alu -15 118 1 51 65 0 0 chr15 41897914 41898007 -59482514 + AT_rich Low_complexity Low_complexity 1 93 0 21 57 0 0 chr15 41898140 41898175 -59482346 + AT_rich Low_complexity Low_complexity 1 35 0 881 268 112 49 chr15 41898488 41898993 -59481528 + L2 LINE L2 2548 3084 -229 1102 219 54 0 chr15 41899083 41899325 -59481196 - MIR SINE MIR 0 262 8 224 282 106 0 chr15 41899307 41899392 -59481129 + L2 LINE L2 3136 3229 -43 * 423 0 0 0 chr15 41899937 41899984 -59480537 + (TC)n Simple_repeat Simple_repeat 2 48 0 560 302 91 89 chr15 41900135 41900983 -59479538 - L2 LINE L2 -3 3269 2404 234 0 0 0 chr15 41900983 41901009 -59479512 + (TG)n Simple_repeat Simple_repeat 1 26 0 560 302 91 89 chr15 41901009 41901711 -59478810 - L2 LINE L2 -868 2404 1705 206 79 0 53 chr15 41901711 41901749 -59478772 + (TCCCC)n Simple_repeat Simple_repeat 3 38 0 25 65 0 0 chr15 41903965 41904011 -59476510 + AT_rich Low_complexity Low_complexity 1 46 0 207 150 50 0 chr15 41904512 41904572 -59475949 + CT-rich Low_complexity Low_complexity 2 64 0 323 211 260 16 chr15 41904630 41904753 -59475768 - LTR33 LTR ERVL -7 514 362 935 243 171 47 chr15 41904786 41905118 -59475403 + LTR33 LTR ERVL 67 459 -62 1577 168 56 3 chr15 41905118 41905252 -59475269 + AluJo SINE Alu 1 127 -185 1921 129 33 0 chr15 41905252 41905554 -59474967 + AluSx SINE Alu 1 312 0 1577 168 56 3 chr15 41905554 41905705 -59474816 + AluJo SINE Alu 127 301 -11 935 243 171 47 chr15 41905705 41905776 -59474745 + LTR33 LTR ERVL 459 520 -1 642 278 129 85 chr15 41905776 41906082 -59474439 - L1MEd LINE L1 -4903 1216 925 2175 132 0 0 chr15 41906082 41906386 -59474135 - AluSx SINE Alu -8 304 1 642 278 129 85 chr15 41906386 41907182 -59473339 - L1MEd LINE L1 -5194 925 66 516 329 12 0 chr15 41907333 41907497 -59473024 + MIR SINE MIR 4 169 -93 947 240 58 16 chr15 41907498 41907756 -59472765 - MLT1C LTR MaLR -8 459 191 441 213 75 0 chr15 41907766 41907860 -59472661 + LTR33-int LTR ERVL 333 433 -3123 1136 247 87 74 chr15 41907877 41908203 -59472318 - L1MC4a LINE L1 -1340 6468 6148 2328 103 0 6 chr15 41908203 41908515 -59472006 - AluSx SINE Alu -2 310 1 1136 247 87 74 chr15 41908515 41908704 -59471817 - L1MC4a LINE L1 -1660 6148 5943 429 20 0 0 chr15 41908704 41908754 -59471767 + (TA)n Simple_repeat Simple_repeat 2 51 0 1136 247 87 74 chr15 41908754 41908779 -59471742 - L1MC4a LINE L1 -1865 5943 5920 433 199 237 0 chr15 41908940 41909071 -59471450 - MER5A DNA MER1_type -12 177 16 2414 48 52 0 chr15 41911005 41911295 -59469226 - AluY SINE Alu -6 305 1 21 0 0 0 chr15 41911295 41911316 -59469205 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 41912396 41912417 -59468104 + AT_rich Low_complexity Low_complexity 1 21 0 458 289 46 55 chr15 41912755 41912973 -59467548 + LTR16C LTR ERVL 187 402 -89 295 342 84 61 chr15 41913188 41913451 -59467070 - L2 LINE L2 -8 3264 2996 670 328 81 36 chr15 41914548 41915020 -59465501 - LTR33 LTR ERVL -9 512 20 34 84 0 0 chr15 41915217 41915300 -59465221 + AT_rich Low_complexity Low_complexity 1 83 0 2365 156 6 6 chr15 41915440 41915805 -59464716 - MLT1A1 LTR MaLR 0 365 1 708 264 62 10 chr15 41915848 41916056 -59464465 - MIR SINE MIR -38 224 6 214 297 16 0 chr15 41916439 41916503 -59464018 - L2 LINE L2 -5 3308 3244 412 323 31 24 chr15 41916800 41916927 -59463594 + MIR3 SINE MIR 3 130 -78 436 265 10 0 chr15 41917122 41917224 -59463297 + MER5A DNA MER1_type 4 106 -83 199 263 83 75 chr15 41917432 41917565 -59462956 - L2 LINE L2 -182 3090 2957 354 67 0 0 chr15 41918025 41918070 -59462451 + MSTC LTR MaLR 2 46 -382 18691 157 42 11 chr15 41918070 41919736 -59460785 + L1M1 LINE L1 17 1630 -5935 243 0 0 0 chr15 41919736 41919763 -59460758 + (GA)n Simple_repeat Simple_repeat 2 28 0 18691 157 42 11 chr15 41919763 41920064 -59460457 + L1M1 LINE L1 1630 1920 -5645 2729 98 56 0 chr15 41920064 41920421 -59460100 - MER51B LTR ERV1 0 377 1 18691 157 42 11 chr15 41920421 41921639 -59458882 + L1M1 LINE L1 1920 3301 -4264 6495 95 8 12 chr15 41921655 41922031 -59458490 - L1PB1 LINE L1 0 6151 5775 2336 74 0 43 chr15 41922031 41922356 -59458165 - AluY SINE Alu 0 311 1 6495 95 8 12 chr15 41922356 41922988 -59457533 - L1PB1 LINE L1 -376 5775 5149 3025 113 2 2 chr15 41922995 41923404 -59457117 + LTR3 LTR ERVK 23 431 -1 12779 217 26 15 chr15 41923411 41926485 -59454036 - L1 LINE L1 -866 5280 2172 6281 66 0 4 chr15 41926466 41927254 -59453267 - L1PA6 LINE L1 0 6870 6086 * 10260 88 46 16 chr15 41927248 41927392 -59453129 - L1PA6 LINE L1 -3929 2934 2796 2344 106 0 6 chr15 41927392 41927703 -59452818 - AluSg SINE Alu 0 310 2 10260 88 46 16 chr15 41927703 41928828 -59451693 - L1PA6 LINE L1 -4067 2796 1607 2277 108 0 13 chr15 41928828 41929143 -59451378 - AluSx SINE Alu -1 311 1 10260 88 46 16 chr15 41929143 41929443 -59451078 - L1PA6 LINE L1 -5256 1607 1317 3397 134 6 17 chr15 41929458 41929988 -59450533 - L1PA6 LINE L1 -5706 1157 634 1145 162 5 0 chr15 41929988 41930186 -59450335 - L1PA6 LINE L1 -6663 200 2 4148 178 12 29 chr15 41930190 41930704 -59449817 + L1M1 LINE L1 3287 3808 -3757 2388 106 66 26 chr15 41930704 41931054 -59449467 - THE1B LTR MaLR 0 364 1 12203 97 25 0 chr15 41931054 41932596 -59447925 - THE1B-int LTR MaLR 0 1580 1 2289 108 61 55 chr15 41932596 41932636 -59447885 - THE1B LTR MaLR 0 364 326 2237 104 3 23 chr15 41932636 41932945 -59447576 + AluY SINE Alu 1 303 -8 2289 108 61 55 chr15 41932945 41933266 -59447255 - THE1B LTR MaLR -38 326 1 4148 178 12 29 chr15 41933266 41933948 -59446573 + L1M1 LINE L1 3805 4461 -3104 1198 199 121 49 chr15 41933951 41934258 -59446263 + MLT1A1 LTR MaLR 37 365 0 315 356 85 13 chr15 41934316 41934633 -59445888 - L2 LINE L2 -941 2373 2034 229 188 0 21 chr15 41934836 41934884 -59445637 - L2 LINE L2 -5 3308 3262 190 214 60 120 chr15 41934933 41935050 -59445471 + L2 LINE L2 3158 3267 -5 1674 176 0 7 chr15 41936187 41936476 -59444045 - AluSx SINE Alu -3 309 23 308 360 0 17 chr15 41936627 41936802 -59443719 + CT-rich Low_complexity Low_complexity 5 176 0 2001 132 0 3 chr15 41986856 41987144 -59393377 + AluSx SINE Alu 23 309 -3 190 214 60 120 chr15 41988281 41988398 -59392123 - L2 LINE L2 -5 3267 3158 229 188 0 21 chr15 41988447 41988495 -59392026 + L2 LINE L2 3262 3308 -5 315 356 85 13 chr15 41988698 41989015 -59391506 + L2 LINE L2 2034 2373 -941 1198 199 121 49 chr15 41989073 41989380 -59391141 - MLT1A1 LTR MaLR 0 365 37 4148 178 12 29 chr15 41989383 41990065 -59390456 - L1 LINE L1 -3104 4461 3769 2289 108 61 55 chr15 41990065 41990386 -59390135 + THE1B LTR MaLR 1 326 -38 2237 104 3 23 chr15 41990386 41990695 -59389826 - AluY SINE Alu -8 303 1 2289 108 61 55 chr15 41990695 41990735 -59389786 + THE1B LTR MaLR 326 364 0 12203 97 25 0 chr15 41990735 41992277 -59388244 + THE1B-int LTR MaLR 1 1580 0 2388 106 66 26 chr15 41992277 41992627 -59387894 + THE1B LTR MaLR 1 364 0 4148 178 12 29 chr15 41992627 41993141 -59387380 - L1 LINE L1 -3793 3772 3287 1145 162 5 0 chr15 41993145 41993343 -59387178 + L1PA6 LINE L1 2 200 -6663 3397 134 6 17 chr15 41993343 41993873 -59386648 + L1PA6 LINE L1 634 1157 -5706 6533 162 30 29 chr15 41993888 41994188 -59386333 + L1PA6 LINE L1 1317 1615 -5255 2277 108 0 13 chr15 41994188 41994503 -59386018 + AluSx SINE Alu 1 311 -1 6533 162 30 29 chr15 41994503 41995628 -59384893 + L1PA6 LINE L1 1615 2737 -4133 2344 106 0 6 chr15 41995628 41995939 -59384582 + AluSg SINE Alu 2 310 0 6533 162 30 29 chr15 41995939 41996084 -59384437 + L1PA6 LINE L1 2737 2880 -3990 6533 66 0 4 chr15 41996084 41996865 -59383656 + L1PA6 LINE L1 6086 6870 0 6533 162 30 29 chr15 41996865 41999919 -59380602 + L1PA6 LINE L1 2880 6870 0 3025 113 2 2 chr15 41999926 42000335 -59380186 - LTR3 LTR ERVK -1 431 23 6495 95 8 12 chr15 42000342 42000974 -59379547 + L1PB1 LINE L1 5149 5775 -376 2336 74 0 43 chr15 42000974 42001299 -59379222 + AluY SINE Alu 1 311 0 6495 95 8 12 chr15 42001299 42001675 -59378846 + L1PB1 LINE L1 5775 6151 0 18691 157 42 11 chr15 42001691 42002909 -59377612 - L1M1 LINE L1 -4264 3301 2122 2729 98 56 0 chr15 42002909 42003266 -59377255 + MER51B LTR ERV1 1 377 0 18691 157 42 11 chr15 42003266 42003567 -59376954 - L1M1 LINE L1 -5443 2122 1832 243 0 0 0 chr15 42003567 42003594 -59376927 + (TC)n Simple_repeat Simple_repeat 2 28 0 18691 157 42 11 chr15 42003594 42005260 -59375261 - L1M1 LINE L1 -5733 1832 17 354 67 0 0 chr15 42005260 42005305 -59375216 - MSTC LTR MaLR -382 46 2 199 263 83 75 chr15 42005765 42005898 -59374623 + L2 LINE L2 2957 3090 -182 436 265 10 0 chr15 42006106 42006208 -59374313 - MER5A DNA MER1_type -83 106 4 412 323 31 24 chr15 42006403 42006530 -59373991 - MIR3 SINE MIR -78 130 3 214 297 16 0 chr15 42006827 42006891 -59373630 + L2 LINE L2 3244 3308 -5 708 264 62 10 chr15 42007274 42007482 -59373039 + MIR SINE MIR 6 224 -38 2365 156 6 6 chr15 42007525 42007890 -59372631 + MLT1A1 LTR MaLR 1 365 0 34 84 0 0 chr15 42008030 42008113 -59372408 + AT_rich Low_complexity Low_complexity 1 83 0 670 328 81 36 chr15 42008310 42008782 -59371739 + LTR33 LTR ERVL 20 512 -9 295 342 84 61 chr15 42009879 42010142 -59370379 + L2 LINE L2 2996 3264 -8 458 289 46 55 chr15 42010357 42010575 -59369946 - LTR16C LTR ERVL -89 402 187 21 0 0 0 chr15 42010913 42010934 -59369587 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 42012014 42012035 -59368486 + AT_rich Low_complexity Low_complexity 1 21 0 2414 48 52 0 chr15 42012035 42012325 -59368196 + AluY SINE Alu 1 305 -6 433 199 237 0 chr15 42014259 42014390 -59366131 + MER5A DNA MER1_type 16 177 -12 1136 247 87 74 chr15 42014551 42014576 -59365945 + L1MC4a LINE L1 5920 5943 -1865 429 20 0 0 chr15 42014576 42014626 -59365895 + (TA)n Simple_repeat Simple_repeat 2 51 0 1136 247 87 74 chr15 42014626 42014815 -59365706 + L1MC4a LINE L1 5943 6128 -1680 2328 103 0 6 chr15 42014815 42015127 -59365394 + AluSx SINE Alu 1 310 -2 1136 247 87 74 chr15 42015127 42015453 -59365068 + L1MC4a LINE L1 6128 6468 -1340 441 213 75 0 chr15 42015470 42015564 -59364957 - LTR33-int LTR ERVL -3123 433 333 947 240 58 16 chr15 42015574 42015832 -59364689 + MLT1C LTR MaLR 191 459 -8 516 329 12 0 chr15 42015833 42015997 -59364524 - MIR SINE MIR -93 169 4 657 284 129 86 chr15 42016148 42016945 -59363576 + L1MEd LINE L1 66 924 -5195 2175 132 0 0 chr15 42016945 42017249 -59363272 + AluSx SINE Alu 1 304 -8 657 284 129 86 chr15 42017249 42017555 -59362966 + L1MEd LINE L1 924 1216 -4903 935 243 171 47 chr15 42017555 42017626 -59362895 - LTR33 LTR ERVL -1 520 459 1577 168 56 3 chr15 42017626 42017777 -59362744 - AluJo SINE Alu -11 301 159 1921 129 33 0 chr15 42017777 42018079 -59362442 - AluSx SINE Alu 0 312 1 1577 168 56 3 chr15 42018079 42018213 -59362308 - AluJo SINE Alu -153 159 1 935 243 171 47 chr15 42018213 42018545 -59361976 - LTR33 LTR ERVL -62 459 67 323 211 260 16 chr15 42018578 42018701 -59361820 + LTR33 LTR ERVL 362 514 -7 207 150 50 0 chr15 42018759 42018819 -59361702 + GA-rich Low_complexity Low_complexity 2 64 0 25 65 0 0 chr15 42019320 42019366 -59361155 + AT_rich Low_complexity Low_complexity 1 46 0 206 79 0 53 chr15 42021581 42021619 -59358902 + (GGGGA)n Simple_repeat Simple_repeat 3 38 0 560 301 88 89 chr15 42021619 42022321 -59358200 + L2 LINE L2 1705 2406 -908 234 0 0 0 chr15 42022321 42022347 -59358174 + (CA)n Simple_repeat Simple_repeat 1 26 0 560 301 88 89 chr15 42022347 42022885 -59357636 + L2 LINE L2 2406 2943 -371 2402 55 3 7 chr15 42023586 42023875 -59356646 + AluY SINE Alu 1 288 -23 5771 118 102 16 chr15 42023916 42024930 -59355591 - MER52C LTR ERV1 -175 1103 3 635 279 135 30 chr15 42025654 42026091 -59354430 - MER90 LTR ERV1 -14 561 78 203 216 0 0 chr15 42026108 42026145 -59354376 + MIR3 SINE MIR 123 159 -49 3110 158 28 20 chr15 42026308 42026846 -59353675 - L1PA16 LINE L1 -1 6165 5624 2017 136 46 15 chr15 42026850 42027174 -59353347 - MSTB LTR MaLR -92 334 1 1086 152 94 0 chr15 42027175 42027366 -59353155 - L1PA16 LINE L1 -524 5642 5434 211 301 17 75 chr15 42027455 42027587 -59352934 - MIR SINE MIR -88 120 1 1562 233 12 0 chr15 42028549 42028879 -59351642 + MER58B DNA MER1_type 8 341 0 1882 110 61 0 chr15 42028933 42029197 -59351324 + AluSx SINE Alu 14 293 -19 25 0 0 0 chr15 42030523 42030548 -59349973 + AT_rich Low_complexity Low_complexity 1 25 0 3385 125 48 103 chr15 42030747 42031094 -59349427 + MER6A DNA MER2_type 1 365 -500 309 26 0 0 chr15 42031094 42031132 -59349389 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 2379 60 0 3 chr15 42031132 42031414 -59349107 - AluSc SINE Alu -28 281 1 3385 125 48 103 chr15 42031414 42031497 -59349024 + MER6A DNA MER2_type 364 450 -415 2175 95 14 0 chr15 42031497 42031782 -59348739 - AluY SINE Alu -3 308 20 3385 125 48 103 chr15 42031782 42031989 -59348532 + MER6A DNA MER2_type 450 605 0 1002 219 90 0 chr15 42032078 42032279 -59348242 - MER20 DNA MER1_type 0 219 1 646 251 30 25 chr15 42033316 42033515 -59347006 + L1ME4a LINE L1 5572 5771 -350 310 218 89 24 chr15 42033632 42033756 -59346765 + L1ME4a LINE L1 5956 6087 -34 24 54 0 18 chr15 42033767 42033802 -59346719 + AT_rich Low_complexity Low_complexity 1 36 -19 1785 156 14 20 chr15 42033802 42034097 -59346424 - AluSx SINE Alu -19 293 1 24 54 0 18 chr15 42034097 42034117 -59346404 + AT_rich Low_complexity Low_complexity 36 55 0 1186 205 134 72 chr15 42034250 42034901 -59345620 + LTR1B LTR ERV1 105 785 0 1108 212 136 4 chr15 42034903 42035153 -59345368 - MER21B LTR ERV1 -562 301 19 307 210 17 118 chr15 42035150 42035269 -59345252 - MER21B LTR ERV1 -756 107 1 * 309 276 168 24 chr15 42035974 42036224 -59344297 - L1MC4a LINE L1 -1690 6118 5833 778 106 35 18 chr15 42036517 42036687 -59343834 + GA-rich Low_complexity Low_complexity 2 174 0 2360 72 0 0 chr15 42036883 42037173 -59343348 - AluY SINE Alu -3 308 19 203 86 86 0 chr15 42038717 42038752 -59341769 + T-rich Low_complexity Low_complexity 1 38 0 198 0 0 0 chr15 42038794 42038816 -59341705 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2341 31 0 0 chr15 42038817 42039076 -59341445 - L1PA4 LINE L1 -8 6147 5889 407 153 0 0 chr15 42039485 42039544 -59340977 - MER74A LTR ERVL -26 532 474 2181 123 3 3 chr15 42039544 42039853 -59340668 + AluSq SINE Alu 1 309 -4 346 158 0 40 chr15 42039856 42039932 -59340589 + LTR30 LTR ERV1 552 624 -98 1383 133 57 0 chr15 42039932 42040143 -59340378 + LTR12 LTR ERV1 362 584 -130 22 0 0 0 chr15 42040418 42040440 -59340081 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr15 42040444 42040480 -59340041 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1585 189 34 6 chr15 42040482 42040810 -59339711 - MER74A LTR ERVL -70 488 152 313 280 80 0 chr15 42040917 42041067 -59339454 - MER74A LTR ERVL -265 293 132 195 326 0 0 chr15 42041249 42041292 -59339229 + MIR SINE MIR 13 55 -207 2130 117 3 7 chr15 42041307 42041605 -59338916 + AluSx SINE Alu 1 297 -15 439 239 0 0 chr15 42041668 42041760 -59338761 - MIR SINE MIR -67 195 104 376 259 12 0 chr15 42041740 42041825 -59338696 + MIR SINE MIR 177 262 0 * 255 310 40 30 chr15 42043459 42043559 -59336962 + MIR SINE MIR 34 134 -74 2732 137 14 18 chr15 42043599 42044037 -59336484 + LOR1b LTR ERV1 1 436 -25 684 119 0 0 chr15 42044115 42044216 -59336305 - LTR12 LTR ERV1 -133 581 481 334 271 17 0 chr15 42044217 42044335 -59336186 - LTR30 LTR ERV1 -79 643 524 1145 145 144 15 chr15 42044335 42044585 -59335936 - LTR12 LTR ERV1 -432 2006 55 308 173 0 0 chr15 42044585 42044637 -59335884 - LTR30 LTR ERV1 -670 52 1 2096 104 7 11 chr15 42047589 42047923 -59332598 - AluSq SINE Alu 0 333 1 704 255 96 10 chr15 42048437 42048645 -59331876 + MIR SINE MIR 34 259 -3 446 82 0 0 chr15 42049334 42049395 -59331126 + MSTB2 LTR MaLR 85 145 -312 935 270 91 19 chr15 42049791 42050110 -59330411 - LTR16B LTR ERVL 0 464 123 369 0 0 0 chr15 42050177 42050218 -59330303 + (CA)n Simple_repeat Simple_repeat 2 42 0 671 315 42 52 chr15 42050264 42050349 -59330172 - L1MC4a LINE L1 -1892 5916 5832 2545 154 43 19 chr15 42050349 42050765 -59329756 + MSTB LTR MaLR 1 426 0 671 315 42 52 chr15 42050765 42051155 -59329366 - L1MC4a LINE L1 -1976 5832 5446 263 301 14 14 chr15 42051529 42051602 -59328919 - MIR SINE MIR -113 95 23 21 36 0 0 chr15 42051617 42051645 -59328876 + AT_rich Low_complexity Low_complexity 1 28 0 1698 161 17 30 chr15 42052183 42052482 -59328039 + MSTB LTR MaLR 75 369 -57 278 310 32 32 chr15 42052813 42052971 -59327550 - L1ME3A LINE L1 0 6170 6013 1155 265 53 39 chr15 42053073 42053541 -59326980 - L1MC5 LINE L1 -439 7522 7048 235 140 0 20 chr15 42053549 42053599 -59326922 + L1MEc LINE L1 1891 1939 -4457 2511 58 0 0 chr15 42053601 42053892 -59326629 + AluY SINE Alu 1 291 -20 1135 268 63 31 chr15 42053925 42054369 -59326152 - L1MCc LINE L1 -5037 1386 929 1556 135 32 35 chr15 42054638 42054920 -59325601 + AluY SINE Alu 11 291 -20 1141 268 63 31 chr15 42054953 42055397 -59325124 - L1MCc LINE L1 -5037 1386 929 186 43 0 0 chr15 42055432 42055455 -59325066 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 288 262 56 65 chr15 42055908 42055930 -59324591 + MIR SINE MIR 49 70 -192 2439 74 0 3 chr15 42055930 42056229 -59324292 + AluY SINE Alu 1 298 -13 288 262 56 65 chr15 42056229 42056313 -59324208 + MIR SINE MIR 70 154 -108 * 661 152 8 40 chr15 42056312 42056437 -59324084 - L2 LINE L2 0 3313 3193 234 258 32 21 chr15 42056440 42056533 -59323988 + MIR SINE MIR 163 256 -6 226 365 21 10 chr15 42057698 42057794 -59322727 - MIR SINE MIR -164 98 2 2737 65 9 0 chr15 42057912 42058252 -59322269 - L1PA8 LINE L1 -7 6165 5823 2514 197 123 2 chr15 42058316 42058818 -59321703 + MLT1F1 LTR MaLR 1 563 -4 279 258 57 32 chr15 42058848 42058972 -59321549 + MLT1F1-int LTR MaLR 1243 1369 -2 449 162 14 0 chr15 42058975 42059049 -59321472 + MLT1F1 LTR MaLR 3 77 -490 316 222 37 89 chr15 42059087 42059222 -59321299 + MER45A DNA AcHobo 51 178 0 295 324 37 0 chr15 42060495 42060603 -59319918 + LTR16A LTR ERVL 3 114 -336 252 333 94 18 chr15 42060648 42060819 -59319702 + LTR16A LTR ERVL 258 441 -9 485 336 87 25 chr15 42061188 42061554 -59318967 + HERV16 LTR ERVL 272 660 -4336 2186 112 27 0 chr15 42061562 42061858 -59318663 + AluSc SINE Alu 1 304 -5 1547 298 16 7 chr15 42062149 42062589 -59317932 + HERV16 LTR ERVL 947 1390 -3606 709 273 6 6 chr15 42062585 42062761 -59317760 + ERVL LTR ERVL 3021 3196 -2568 * 438 297 61 20 chr15 42062814 42063116 -59317405 + ERVL LTR ERVL 3134 3325 -1671 * 581 297 78 63 chr15 42063096 42063861 -59316660 + ERVL LTR ERVL 4237 5383 -381 931 70 0 0 chr15 42064832 42064946 -59315575 + AluSp/q SINE Alu 186 299 -14 13193 191 38 17 chr15 42065986 42067424 -59313097 + L1PB1 LINE L1 630 2036 -4831 2316 132 24 16 chr15 42067424 42067796 -59312725 - THE1C LTR MaLR 0 375 1 9314 105 57 73 chr15 42067796 42069401 -59311120 - THE1C-int LTR MaLR 0 1580 1 2321 109 41 16 chr15 42069401 42069767 -59310754 - THE1C LTR MaLR 0 375 1 13193 191 38 17 chr15 42069767 42074286 -59306235 + L1PB1 LINE L1 2035 6862 -5 195 281 53 0 chr15 42074294 42074351 -59306170 - MIR SINE MIR -155 107 48 519 328 22 18 chr15 42076601 42076830 -59303691 - HERVL LTR ERVL -2323 3331 3102 1261 323 55 21 chr15 42076937 42077616 -59302905 - HERVL LTR ERVL -2102 2894 2193 274 374 9 0 chr15 42077831 42077938 -59302583 + MIR SINE MIR 37 144 -64 2359 73 0 3 chr15 42077960 42078247 -59302274 + AluY SINE Alu 1 286 -25 223 250 10 39 chr15 42078598 42078702 -59301819 + T-rich Low_complexity Low_complexity 2 102 0 784 75 61 34 chr15 42079087 42079234 -59301287 - AluSq/x SINE Alu -161 151 1 343 289 107 31 chr15 42080014 42080173 -59300348 + MIR SINE MIR 22 192 -70 777 201 34 61 chr15 42081036 42081330 -59299191 + pTR5 LTR ERV1 743 1028 -1410 5214 97 25 58 chr15 42081409 42082264 -59298257 + LTR12 LTR ERV1 1 826 0 189 196 0 0 chr15 42082503 42082554 -59297967 + GA-rich Low_complexity Low_complexity 1 51 0 216 0 0 0 chr15 42082584 42082608 -59297913 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2259 101 7 3 chr15 42082621 42082927 -59297594 - AluY SINE Alu -4 307 1 2173 136 3 0 chr15 42082934 42083242 -59297279 - AluSx SINE Alu -3 309 1 451 301 59 48 chr15 42083259 42083445 -59297076 + MIR3 SINE MIR 16 203 -5 1769 138 21 10 chr15 42083740 42084029 -59296492 + AluSx SINE Alu 1 292 -20 28 48 0 0 chr15 42084338 42084380 -59296141 + AT_rich Low_complexity Low_complexity 1 42 0 1166 159 0 15 chr15 42084609 42084810 -59295711 + AluSg/x SINE Alu 94 291 -19 238 238 143 0 chr15 42085003 42085066 -59295455 + MIR SINE MIR 15 86 -176 474 273 0 0 chr15 42085451 42085572 -59294949 - MIR SINE MIR -13 249 129 180 0 0 0 chr15 42085922 42085942 -59294579 + (T)n Simple_repeat Simple_repeat 1 20 0 1709 152 72 0 chr15 42087161 42087437 -59293084 - AluSx SINE Alu -16 296 1 860 249 30 0 chr15 42087688 42087885 -59292636 - MIR SINE MIR -48 214 12 288 324 180 14 chr15 42087865 42088143 -59292378 + L2 LINE L2 2583 2906 -408 * 339 267 134 35 chr15 42088379 42088581 -59291940 + L3 LINE CR1 1133 1354 -223 466 264 151 9 chr15 42091051 42091263 -59289258 - MLT1L LTR MaLR 0 615 374 23 54 0 0 chr15 42091877 42091914 -59288607 + AT_rich Low_complexity Low_complexity 1 37 0 742 276 199 28 chr15 42092104 42092567 -59287954 + MLT1H LTR MaLR 8 549 0 539 235 0 0 chr15 42093740 42093859 -59286662 - MER94 DNA DNA -15 119 1 4123 151 51 8 chr15 42094955 42095658 -59284863 + MER44D DNA MER2_type 1 605 0 333 292 141 31 chr15 42095830 42096022 -59284499 - MIR SINE MIR -19 243 31 500 313 0 8 chr15 42096983 42097111 -59283410 - MER5B DNA MER1_type -1 177 51 300 253 105 43 chr15 42097722 42097884 -59282637 + MLT1L LTR MaLR 442 613 -2 313 255 181 20 chr15 42098557 42098706 -59281815 + MIR3 SINE MIR 5 177 -31 294 237 0 0 chr15 42099520 42099596 -59280925 + CT-rich Low_complexity Low_complexity 2 77 0 2220 157 15 48 chr15 42100462 42100713 -59279808 - MER65A LTR ERV1 0 445 214 2374 67 10 3 chr15 42100713 42101011 -59279510 - AluY SINE Alu -11 300 1 2220 157 15 48 chr15 42101011 42101219 -59279302 - MER65A LTR ERV1 -231 214 1 2148 221 54 19 chr15 42101219 42101833 -59278688 - MER65A-int LTR ERV1 0 4871 4237 660 240 111 0 chr15 42101833 42102004 -59278517 - MER65A-int LTR ERV1 -739 4132 3943 347 164 14 41 chr15 42102414 42102487 -59278034 - MER65A-int LTR ERV1 -980 3956 3886 * 2110 213 97 89 chr15 42102475 42103904 -59276617 - MER65A-int LTR ERV1 -1114 4028 2640 606 216 10 50 chr15 42103989 42104188 -59276333 - MER65A-int LTR ERV1 -2868 3730 3540 7576 190 57 67 chr15 42104329 42107282 -59273239 - MER65A-int LTR ERV1 -2377 2494 54 2625 137 11 14 chr15 42107336 42107780 -59272741 - MER65A LTR ERV1 -2 443 1 213 327 100 9 chr15 42107956 42108086 -59272435 + MIR3 SINE MIR 20 160 -48 2103 127 0 0 chr15 42108329 42108613 -59271908 + AluSx SINE Alu 1 284 -28 387 0 0 0 chr15 42108616 42108659 -59271862 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 363 351 114 41 chr15 42109086 42109667 -59270854 - L2 LINE L2 -19 3253 2626 517 289 108 60 chr15 42110087 42110733 -59269788 - L1M4 LINE L1 -2718 3428 2752 241 322 52 0 chr15 42111505 42111620 -59268901 - HAL1b LINE L1 -453 895 775 374 231 133 34 chr15 42111645 42111909 -59268612 - HAL1b LINE L1 -635 713 424 709 207 0 13 chr15 42111965 42112115 -59268406 - MER106A DNA MER1_type -88 148 1 386 297 86 40 chr15 42112184 42112406 -59268115 - HAL1b LINE L1 -1052 296 65 803 329 148 8 chr15 42114094 42114480 -59266041 + LTR16A LTR ERVL 11 450 0 323 256 110 43 chr15 42114835 42114999 -59265522 - MIR SINE MIR -43 219 45 23 0 0 0 chr15 42115294 42115317 -59265204 + AT_rich Low_complexity Low_complexity 1 23 0 1837 156 0 35 chr15 42116713 42117028 -59263493 - AluSx SINE Alu -8 304 1 314 285 89 25 chr15 42117642 42117800 -59262721 + LTR16A LTR ERVL 283 450 0 2167 102 3 10 chr15 42118286 42118580 -59261941 - AluSx SINE Alu 0 312 21 328 339 8 0 chr15 42118682 42118809 -59261712 - MIR SINE MIR -2 260 133 366 316 105 77 chr15 42118911 42119303 -59261218 + L2 LINE L2 2862 3264 -8 2469 83 0 3 chr15 42119392 42119705 -59260816 - AluSx SINE Alu 0 312 1 244 284 233 9 chr15 42119984 42120100 -59260421 + MIR SINE MIR 10 151 -111 1368 117 35 31 chr15 42121716 42121973 -59258548 + L1MA9 LINE L1 5894 6151 -161 2292 147 52 5 chr15 42121973 42122374 -59258147 + MER83 LTR ERV1 1 420 -28 604 134 71 0 chr15 42122392 42122519 -59258002 + L1MA9 LINE L1 6147 6282 -30 242 213 260 16 chr15 42122821 42122948 -59257573 + LTR33 LTR ERVL 8 165 -356 586 214 0 21 chr15 42123235 42123380 -59257141 - L1ME1 LINE L1 0 6184 6040 388 338 73 0 chr15 42123381 42123517 -59257004 - L2 LINE L2 -564 2750 2605 266 361 102 19 chr15 42123514 42123622 -59256899 - L2 LINE L2 -45 3227 3111 * 235 262 101 38 chr15 42124110 42124267 -59256254 + MIR SINE MIR 1 169 -64 1343 219 20 12 chr15 42124801 42125143 -59255378 - L1ME LINE L1 -559 5676 5332 487 242 16 0 chr15 42125143 42125267 -59255254 - MER58B DNA MER1_type 0 341 216 633 205 58 11 chr15 42125336 42125526 -59254995 - L1ME LINE L1 -880 5335 5137 2959 210 56 96 chr15 42125695 42126414 -59254107 - L1ME LINE L1 -1877 4338 3701 1391 85 5 31 chr15 42126414 42126634 -59253887 + L1MA2 LINE L1 6087 6304 0 2959 210 56 96 chr15 42126634 42127314 -59253207 - L1ME LINE L1 -2514 3701 2995 2088 124 40 0 chr15 42127332 42127655 -59252866 - L1PA15 LINE L1 -21 6144 5809 1298 258 43 5 chr15 42127661 42128107 -59252414 - L1ME LINE L1 -3231 2984 2522 2039 166 42 13 chr15 42128130 42128509 -59252012 + MLT1B LTR MaLR 1 390 0 1495 72 5 0 chr15 42128531 42128725 -59251796 - AluY SINE Alu -1 310 116 326 133 34 10 chr15 42128725 42128809 -59251712 - AluS SINE Alu -241 62 1 957 301 75 10 chr15 42129151 42129630 -59250891 - L1ME LINE L1 -5835 561 52 2501 66 0 3 chr15 42129735 42130037 -59250484 - AluY SINE Alu -10 301 1 2365 85 7 0 chr15 42130050 42130356 -59250165 - AluY SINE Alu -3 308 1 345 174 0 0 chr15 42130788 42130857 -59249664 + GA-rich Low_complexity Low_complexity 1 69 0 812 268 77 1 chr15 42131308 42131652 -59248869 + LTR16C LTR ERVL 80 491 0 1624 105 8 32 chr15 42132117 42132364 -59248157 - AluSg/x SINE Alu 0 310 70 804 220 86 19 chr15 42132804 42133013 -59247508 + MER58A DNA MER1_type 1 223 -1 647 159 0 0 chr15 42133200 42133307 -59247214 - AluSx SINE Alu -1 309 203 822 153 0 0 chr15 42133311 42133429 -59247092 - AluSx SINE Alu -194 118 1 698 189 132 26 chr15 42133456 42133684 -59246837 + LTR16A1 LTR ERVL 204 455 -2 3595 156 16 0 chr15 42134226 42134872 -59245649 + L1PA14 LINE L1 5479 6134 -27 6823 126 47 27 chr15 42135203 42136405 -59244116 - Tigger3b DNA MER2_type -2 1229 3 255 333 42 7 chr15 42137094 42137238 -59243283 - MER117 DNA MER1_type -48 149 1 296 250 69 62 chr15 42138383 42138527 -59241994 - L2 LINE L2 -5 3308 3164 197 356 23 0 chr15 42138897 42138984 -59241537 - L2 LINE L2 -647 2667 2579 2572 33 7 3 chr15 42139143 42139449 -59241072 + AluY SINE Alu 1 307 -4 2596 144 56 4 chr15 42139742 42140242 -59240279 + L1MA5 LINE L1 5770 6295 -5 1066 154 71 139 chr15 42140334 42140435 -59240086 + L1MDa LINE L1 16 122 -6418 1935 150 48 27 chr15 42140435 42140849 -59239672 - L1MA7 LINE L1 0 6291 5869 1066 154 71 139 chr15 42140849 42141142 -59239379 + L1MDa LINE L1 122 383 -6157 1022 167 11 6 chr15 42141142 42141316 -59239205 + MER5A DNA MER1_type 15 189 0 277 179 13 39 chr15 42141464 42141542 -59238979 - L1PA16 LINE L1 0 6166 6091 1001 187 16 5 chr15 42142635 42142822 -59237699 + MER5A DNA MER1_type 1 189 0 2136 127 132 8 chr15 42143296 42143675 -59236846 + MSTA LTR MaLR 1 426 -2 4254 136 14 14 chr15 42145002 42145715 -59234806 - L1PA10 LINE L1 -13 6155 5443 383 183 71 8 chr15 42146317 42146443 -59234078 - L1P4 LINE L1 -593 5575 5442 194 341 0 33 chr15 42146557 42146648 -59233873 + MER5A DNA MER1_type 3 90 -99 * 282 244 0 89 chr15 42146589 42146679 -59233842 - MER5A DNA MER1_type -22 167 86 341 289 67 37 chr15 42146808 42146943 -59233578 + MER5B DNA MER1_type 39 177 -1 312 288 136 30 chr15 42147158 42147422 -59233099 + MER102b DNA MER1_type 7 298 -43 184 250 68 0 chr15 42147471 42147515 -59233006 - L2 LINE L2 -4 3268 3222 219 69 0 0 chr15 42147849 42147878 -59232643 + (A)n Simple_repeat Simple_repeat 1 29 0 5870 55 4 0 chr15 42148884 42149614 -59230907 - L1PA7 LINE L1 -2 6152 5420 367 258 86 0 chr15 42150201 42150329 -59230192 + MIR SINE MIR 111 249 -13 923 203 154 48 chr15 42150603 42150933 -59229588 + MLT1A1 LTR MaLR 1 365 0 1639 294 112 20 chr15 42151043 42151679 -59228842 + L2 LINE L2 38 731 -2583 998 272 140 14 chr15 42151681 42152189 -59228332 + L2 LINE L2 2692 3280 -33 219 289 14 49 chr15 42152444 42152586 -59227935 + T-rich Low_complexity Low_complexity 4 140 0 5577 85 29 1 chr15 42153564 42154389 -59226132 + L1PA10 LINE L1 5321 6168 0 30 59 0 0 chr15 42156210 42156261 -59224260 + AT_rich Low_complexity Low_complexity 1 51 0 276 341 59 73 chr15 42156283 42156556 -59223965 + L2 LINE L2 3004 3272 0 330 290 87 48 chr15 42157360 42157494 -59223027 + L1MEd LINE L1 598 725 -5445 613 281 110 74 chr15 42157494 42157652 -59222869 - LTR16C LTR ERVL 0 491 340 2170 112 11 0 chr15 42157652 42157963 -59222558 + AluSp SINE Alu 1 314 0 613 281 110 74 chr15 42157963 42158275 -59222246 - LTR16C LTR ERVL -151 340 1 330 290 87 48 chr15 42158275 42158535 -59221986 + L1MEd LINE L1 725 1035 -5135 284 271 32 48 chr15 42158583 42158771 -59221750 + L1MEd LINE L1 1004 1188 -4931 311 332 133 4 chr15 42158819 42159075 -59221446 + L1MEd LINE L1 1274 1562 -4748 297 194 15 0 chr15 42159081 42159148 -59221373 + L1MEd LINE L1 1541 1608 -4702 2269 119 3 0 chr15 42159349 42159642 -59220879 + AluSx SINE Alu 1 294 -18 527 270 147 53 chr15 42160043 42160439 -59220082 + L1MEd LINE L1 3260 3692 -2437 247 294 15 0 chr15 42160848 42160916 -59219605 + LTR16C LTR ERVL 288 356 -135 400 192 50 25 chr15 42161035 42161155 -59219366 + L1MEd LINE L1 3830 3952 -2177 3815 149 87 52 chr15 42161166 42161337 -59219184 + L1MB3 LINE L1 5192 5356 -827 2280 95 10 3 chr15 42161337 42161642 -59218879 + AluSp SINE Alu 1 307 -6 3815 149 87 52 chr15 42161642 42162428 -59218093 + L1MB3 LINE L1 5356 6182 -1 689 274 109 43 chr15 42162539 42163047 -59217474 - LTR33A LTR ERVL -8 515 1 281 236 14 0 chr15 42163097 42163169 -59217352 + L1ME3A LINE L1 6010 6082 -88 1835 158 10 3 chr15 42163939 42164237 -59216284 + AluSx SINE Alu 1 300 -12 1364 276 45 25 chr15 42164316 42164480 -59216041 + LTR16A LTR ERVL 2 161 -289 1347 171 90 81 chr15 42164480 42164890 -59215631 + MLT2D LTR ERVL 1 414 0 1364 276 45 25 chr15 42164890 42165167 -59215354 + LTR16A LTR ERVL 161 450 0 887 99 0 8 chr15 42165410 42165531 -59214990 - AluSp SINE Alu -119 194 75 223 190 13 13 chr15 42165702 42165781 -59214740 + (TA)n Simple_repeat Simple_repeat 2 80 0 331 200 104 0 chr15 42166154 42166279 -59214242 + CT-rich Low_complexity Low_complexity 4 141 0 328 308 158 0 chr15 42166279 42166513 -59214008 - HAL1 LINE L1 -1205 1302 1032 1773 178 6 16 chr15 42166547 42166861 -59213660 - AluSx SINE Alu -1 311 1 2191 98 7 3 chr15 42167320 42167617 -59212904 + AluY SINE Alu 1 298 -13 372 254 41 41 chr15 42167882 42168004 -59212517 + L1ME3 LINE L1 5999 6120 -42 2403 90 3 10 chr15 42168460 42168771 -59211750 - AluY SINE Alu -2 309 1 662 297 47 8 chr15 42169176 42169412 -59211109 - LTR16A LTR ERVL -7 443 199 309 313 0 0 chr15 42169874 42170021 -59210500 + ERVL LTR ERVL 3875 4021 -1743 1115 377 50 17 chr15 42170116 42171036 -59209485 + ERVL LTR ERVL 4161 5110 -654 1400 303 52 24 chr15 42171174 42171802 -59208719 - HERV16 LTR ERVL -4350 646 1 905 333 38 16 chr15 42171802 42172228 -59208293 - LTR16A LTR ERVL 0 450 16 697 261 58 62 chr15 42172938 42173263 -59207258 + MLT1I LTR MaLR 85 408 -1 243 265 53 53 chr15 42174057 42174189 -59206332 + MIR SINE MIR 126 257 -5 1237 208 97 93 chr15 42174412 42174594 -59205927 + MLT1E LTR MaLR 1 181 -412 1853 195 3 14 chr15 42174594 42174963 -59205558 - MLT1A1 LTR MaLR 0 365 1 1237 208 97 93 chr15 42174963 42175379 -59205142 + MLT1E LTR MaLR 181 589 -4 192 309 55 0 chr15 42175815 42175870 -59204651 - MIR SINE MIR -173 89 32 25 31 0 0 chr15 42177310 42177342 -59203179 + AT_rich Low_complexity Low_complexity 1 32 0 243 291 60 34 chr15 42178247 42178364 -59202157 + L2 LINE L2 3193 3312 -1 414 236 22 0 chr15 42178985 42179074 -59201447 - MIR SINE MIR -8 254 164 670 193 139 0 chr15 42179151 42179317 -59201204 - MER3 DNA MER1_type -1 208 20 312 284 38 11 chr15 42179372 42179498 -59201023 - MIR SINE MIR -30 178 45 370 345 70 6 chr15 42180332 42180503 -59200018 + LTR16C LTR ERVL 96 277 -214 1155 251 171 7 chr15 42180525 42180939 -59199582 + MLT1E LTR MaLR 48 529 -64 2129 205 51 3 chr15 42180945 42181516 -59199005 - L1M4 LINE L1 -1537 4609 4012 413 197 68 0 chr15 42181534 42181651 -59198870 + MLT1C LTR MaLR 1 125 -342 6092 102 18 1 chr15 42181651 42181811 -59198710 + L1PA10 LINE L1 4615 4771 -1397 2456 105 41 6 chr15 42181811 42182173 -59198348 + THE1C LTR MaLR 1 375 0 6092 102 18 1 chr15 42182173 42183524 -59196997 + L1PA10 LINE L1 4771 6152 -16 3155 214 63 19 chr15 42183526 42185150 -59195371 - L1MC2 LINE L1 -195 6960 5268 1001 99 0 138 chr15 42185153 42185334 -59195187 + AluY SINE Alu 1 156 -155 222 191 0 0 chr15 42185949 42185991 -59194530 + C-rich Low_complexity Low_complexity 1 42 0 1176 134 12 0 chr15 42186154 42186326 -59194195 + AluSg/x SINE Alu 125 298 -12 683 277 80 11 chr15 42186328 42186678 -59193843 - L1MC2 LINE L1 -1678 5279 4906 * 1217 247 55 67 chr15 42186673 42187341 -59193180 - L1MC2 LINE L1 -4764 2195 1521 239 0 32 0 chr15 42187341 42187372 -59193149 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2037 134 3 3 chr15 42187377 42187676 -59192845 - AluSx SINE Alu -13 299 1 1217 247 55 67 chr15 42187676 42188021 -59192500 - L1MC2 LINE L1 -5442 1517 1187 2605 230 72 61 chr15 42188213 42188772 -59191749 - L1MC2 LINE L1 -5510 1349 797 2094 138 10 0 chr15 42188772 42189070 -59191451 - AluSx SINE Alu -11 301 1 2605 230 72 61 chr15 42189070 42189717 -59190804 - L1MC2 LINE L1 -6062 797 11 517 238 238 28 chr15 42190803 42191017 -59189504 - MIR SINE MIR -1 261 3 1196 277 56 12 chr15 42191771 42192190 -59188331 + LTR16A LTR ERVL 1 446 -4 244 352 94 13 chr15 42192257 42192490 -59188031 + L2 LINE L2 2382 2633 -681 372 275 50 63 chr15 42192506 42192728 -59187793 + LTR16C LTR ERVL 1 219 -272 1604 91 91 0 chr15 42192729 42192948 -59187573 + AluSc SINE Alu 60 298 -11 2679 180 112 26 chr15 42192958 42193637 -59186884 - LTR39 LTR ERV1 -7 776 40 475 279 34 7 chr15 42193680 42193827 -59186694 + LTR16C LTR ERVL 273 423 -68 237 226 0 0 chr15 42193855 42193908 -59186613 - LTR16C LTR ERVL 0 491 439 5487 114 35 23 chr15 42194782 42195798 -59184723 - L1MA4A LINE L1 -1 6302 5274 4407 114 20 1 chr15 42195769 42196468 -59184053 - L1PA8 LINE L1 0 6172 5461 * 3338 179 52 3 chr15 42196471 42197225 -59183296 - L1 LINE L1 -816 5330 4540 11361 48 7 14 chr15 42197226 42199521 -59181000 - L1PA3 LINE L1 -1 6154 3870 753 146 18 0 chr15 42199736 42199955 -59180566 - L1MA2 LINE L1 -14 6290 6023 206 125 94 0 chr15 42200296 42200392 -59180129 + (TATAA)n Simple_repeat Simple_repeat 5 109 0 * 258 119 56 40 chr15 42200378 42200504 -59180017 + (TA)n Simple_repeat Simple_repeat 2 129 0 262 149 75 46 chr15 42200524 42200698 -59179823 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 280 218 53 29 chr15 42200571 42200741 -59179780 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 240 143 67 0 chr15 42200753 42200872 -59179649 + (TATAA)n Simple_repeat Simple_repeat 3 129 0 83 42 0 0 chr15 42200872 42200990 -59179531 + AT_rich Low_complexity Low_complexity 1 118 0 185 101 30 81 chr15 42201065 42201164 -59179357 + (TATAA)n Simple_repeat Simple_repeat 1 94 0 226 173 19 0 chr15 42201171 42201223 -59179298 + (TA)n Simple_repeat Simple_repeat 2 54 0 6190 167 24 33 chr15 42201225 42202199 -59178322 - L1MA7 LINE L1 -12 6279 5297 2350 139 17 5 chr15 42202199 42202602 -59177919 - L1PA16 LINE L1 -9 6157 5750 6190 167 24 33 chr15 42202602 42203435 -59177086 - L1MA7 LINE L1 -994 5297 4497 2656 131 47 132 chr15 42203435 42204093 -59176428 + MER7C DNA MER2_type 1 602 0 6190 167 24 33 chr15 42204093 42204567 -59175954 - L1MA7 LINE L1 -1794 4497 4020 308 59 0 59 chr15 42205134 42205185 -59175336 + Tigger3(Golem) DNA MER2_type 2711 2758 -271 258 310 26 39 chr15 42206694 42206790 -59173731 - HERVL LTR ERVL -405 5359 5264 1852 162 113 38 chr15 42206790 42207215 -59173306 + MSTB2 LTR MaLR 1 457 0 258 310 26 39 chr15 42207215 42207273 -59173248 - HERVL LTR ERVL -500 5264 5207 1526 217 3 42 chr15 42207335 42207713 -59172808 + MLT1A2 LTR MaLR 1 363 -11 262 229 0 16 chr15 42207719 42207780 -59172741 - HERVL LTR ERVL -322 4674 4615 275 391 43 10 chr15 42207837 42208136 -59172385 - HERVL LTR ERVL -708 5056 4748 1027 365 40 7 chr15 42208173 42208900 -59171621 - HERVL LTR ERVL -1092 4672 3922 301 305 59 0 chr15 42208899 42209017 -59171504 - HERVL LTR ERVL -1444 3552 3428 * 470 323 24 27 chr15 42209117 42209455 -59171066 - HERVL LTR ERVL -2093 3561 3225 * 1557 301 64 52 chr15 42209450 42210475 -59170046 - HERVL LTR ERVL -2374 2622 1585 2261 99 51 11 chr15 42210518 42210871 -59169650 - THE1C LTR MaLR 0 375 9 1264 304 92 52 chr15 42210896 42211213 -59169308 - HERVL LTR ERVL -3531 1465 1162 486 157 49 0 chr15 42211213 42211315 -59169206 - L1MB1 LINE L1 0 6168 6062 1264 304 92 52 chr15 42211315 42211750 -59168771 - HERVL LTR ERVL -3834 1162 683 771 287 85 59 chr15 42211888 42212111 -59168410 - HERVL LTR ERVL -4489 507 291 2062 136 7 13 chr15 42212111 42212420 -59168101 - AluSx SINE Alu -5 307 1 771 287 85 59 chr15 42212420 42212688 -59167833 - HERVL LTR ERVL -4705 291 3 280 343 37 0 chr15 42212965 42213073 -59167448 - LTR16A LTR ERVL -338 112 1 1406 237 65 61 chr15 42214770 42215310 -59165211 + MLT1F LTR MaLR 1 542 0 2997 192 47 17 chr15 42215845 42216479 -59164042 - MLT1E1 LTR MaLR -1 653 1 4586 138 22 12 chr15 42217626 42218397 -59162124 - L1PA16 LINE L1 0 6166 5388 11988 48 15 2 chr15 42218398 42219981 -59160540 + L1P LINE L1 3049 4651 -1495 357 280 238 11 chr15 42222444 42222633 -59157888 + L1MEd LINE L1 960 1191 -4928 2325 208 28 44 chr15 42222635 42223276 -59157245 + L1M4 LINE L1 4697 5327 -819 1117 83 13 102 chr15 42223276 42223572 -59156949 + L1P4 LINE L1 5186 5459 -709 403 177 21 52 chr15 42223882 42223978 -59156543 + LTR33 LTR ERVL 423 515 -6 27 0 0 0 chr15 42225097 42225124 -59155397 + AT_rich Low_complexity Low_complexity 1 27 0 361 230 36 3 chr15 42225250 42225350 -59155171 + MIR SINE MIR 21 124 -84 206 283 17 0 chr15 42225328 42225388 -59155133 - MIR SINE MIR -82 180 120 * 797 288 68 22 chr15 42225544 42225867 -59154654 - MLT1I LTR MaLR -38 371 34 2238 180 22 12 chr15 42226207 42226623 -59153898 - MSTA LTR MaLR -4 424 5 9254 166 29 9 chr15 42226627 42228240 -59152281 - MSTA-int LTR MaLR 0 1651 7 2076 196 28 3 chr15 42228259 42228651 -59151870 - MSTA LTR MaLR 0 428 27 713 271 0 11 chr15 42229327 42229515 -59151006 + LTR16B LTR ERVL 232 417 -47 316 242 0 63 chr15 42230693 42230788 -59149733 + L1MC4 LINE L1 6615 6703 -1339 371 331 0 0 chr15 42231031 42231152 -59149369 + A-rich Low_complexity Low_complexity 1 121 0 480 234 47 0 chr15 42231265 42231372 -59149149 - AluSq/x SINE Alu -191 122 11 8734 195 116 17 chr15 42231387 42235284 -59145237 - L1 LINE L1 -2621 4587 1 5019 271 87 10 chr15 42235303 42236851 -59143670 - L1 LINE L1 -1147 4999 3334 345 362 31 8 chr15 42236991 42237118 -59143403 + L2 LINE L2 3143 3272 0 686 259 100 104 chr15 42238535 42238989 -59141532 + MLT1H LTR MaLR 41 494 -55 494 60 0 0 chr15 42238989 42239056 -59141465 - L1PA3 LINE L1 -11 6144 6078 686 259 100 104 chr15 42239056 42239110 -59141411 + MLT1H LTR MaLR 494 547 -2 5201 95 17 24 chr15 42239444 42240254 -59140267 - L1MA1 LINE L1 -131 6171 5367 516 236 36 0 chr15 42241422 42241532 -59138989 - MIR SINE MIR -138 124 11 3586 206 69 29 chr15 42241866 42242693 -59137828 - MER21B LTR ERV1 -2 861 2 569 159 16 24 chr15 42242958 42243084 -59137437 - L1MA6 LINE L1 -5 6295 6171 559 225 33 0 chr15 42243097 42243248 -59137273 - L1MB7 LINE L1 0 6184 6029 2592 182 30 18 chr15 42243249 42244028 -59136493 - L1MB7 LINE L1 -393 5785 5002 291 304 12 12 chr15 42244059 42244220 -59136301 - L1MA4 LINE L1 -9 6291 6131 5682 186 30 22 chr15 42244942 42247204 -59133317 - L1MA4A LINE L1 -34 6269 3994 690 122 29 36 chr15 42247346 42247485 -59133036 - L1MA1 LINE L1 -203 6099 5962 225 0 0 0 chr15 42248559 42248584 -59131937 + (CA)n Simple_repeat Simple_repeat 2 26 0 32 26 0 0 chr15 42250594 42250633 -59129888 + AT_rich Low_complexity Low_complexity 1 39 0 235 342 91 15 chr15 42250712 42250911 -59129610 - MIR SINE MIR -1 261 48 1184 163 30 0 chr15 42251245 42251447 -59129074 + MER3 DNA MER1_type 1 208 -1 535 50 12 12 chr15 42251687 42251767 -59128754 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 1381 177 97 10 chr15 42251871 42252159 -59128362 - MER31B LTR ERV1 -8 458 146 1862 122 44 0 chr15 42252435 42252737 -59127784 - AluSx SINE Alu 0 314 1 269 296 70 35 chr15 42255065 42255207 -59125314 + L2 LINE L2 2079 2225 -1089 256 262 107 12 chr15 42255207 42255291 -59125230 - L2 LINE L2 -968 2346 2255 186 349 162 25 chr15 42255477 42255804 -59124717 + L2 LINE L2 2545 2916 -398 694 286 94 10 chr15 42255996 42256293 -59124228 - L2 LINE L2 -166 3147 2826 319 306 54 72 chr15 42256638 42256860 -59123661 - L1MC5 LINE L1 -1131 6830 6613 1107 320 54 0 chr15 42257848 42258238 -59122283 - LTR16A LTR ERVL -14 436 26 2472 147 35 27 chr15 42259117 42259606 -59120915 - L1MA8 LINE L1 -18 6273 5781 663 284 155 24 chr15 42259632 42260013 -59120508 + MER57B LTR ERV1 4 434 0 31 0 0 0 chr15 42260385 42260416 -59120105 + AT_rich Low_complexity Low_complexity 1 31 0 1819 120 60 21 chr15 42261033 42261316 -59119205 + AluSx SINE Alu 1 294 -18 270 313 104 24 chr15 42262444 42262655 -59117866 + MER57-int LTR ERV1 4715 4942 -3315 1788 235 12 45 chr15 42262750 42263244 -59117277 + MER57-int LTR ERV1 5276 5753 -1784 576 332 36 36 chr15 42263262 42263648 -59116873 + MER57-int LTR ERV1 2145 2530 -2117 3390 108 16 63 chr15 42263654 42264228 -59116293 + LTR10B LTR ERV1 1 547 0 1024 236 25 66 chr15 42264425 42264743 -59115778 + MER57-int LTR ERV1 5863 6167 -1370 1999 92 4 4 chr15 42265346 42265608 -59114913 - AluY SINE Alu -15 296 35 672 319 66 21 chr15 42265800 42266135 -59114386 + MER57-int LTR ERV1 6795 7144 -393 1041 211 121 66 chr15 42266135 42266515 -59114006 + MER57A LTR ERV1 1 401 -2 214 235 20 0 chr15 42266515 42266566 -59113955 + (TA)n Simple_repeat Simple_repeat 2 53 0 4933 156 42 48 chr15 42266568 42268202 -59112319 - L1M2 LINE L1 -506 5785 4163 5963 142 63 18 chr15 42268202 42269354 -59111167 + Tigger3b DNA MER2_type 1 1204 -27 1598 176 44 34 chr15 42269379 42269674 -59110847 - AluJo SINE Alu -14 298 1 1809 199 35 0 chr15 42269675 42270072 -59110449 - L1M2 LINE L1 -1982 4164 3754 1253 209 39 61 chr15 42272373 42272784 -59107737 - LTR52 LTR ERVL -19 402 1 5395 205 66 89 chr15 42272786 42274717 -59105804 - LTR52-int LTR ERVL -2 3554 1580 2091 103 0 0 chr15 42274717 42274989 -59105532 - AluSc SINE Alu -37 272 1 5395 205 66 89 chr15 42274989 42275593 -59104928 - LTR52-int LTR ERVL -1976 1580 856 2176 113 0 7 chr15 42275593 42275894 -59104627 - AluSq SINE Alu -14 299 1 5395 205 66 89 chr15 42275894 42275951 -59104570 - LTR52-int LTR ERVL -2700 856 799 1538 238 42 8 chr15 42275976 42276355 -59104166 - LTR52-int LTR ERVL -2889 667 276 1066 226 10 83 chr15 42276368 42276753 -59103768 + MLT1A2 LTR MaLR 18 374 0 1048 232 32 53 chr15 42276754 42277039 -59103482 - LTR52-int LTR ERVL -3275 281 3 1511 221 43 38 chr15 42277040 42277457 -59103064 - LTR52 LTR ERVL -2 419 1 4577 227 55 28 chr15 42277526 42279076 -59101445 + L1M4 LINE L1 3849 5426 -745 828 270 117 70 chr15 42279409 42280426 -59100095 - HAL1 LINE L1 -10 2497 1433 441 190 31 8 chr15 42281003 42281272 -59099249 + (TA)n Simple_repeat Simple_repeat 1 275 0 2191 65 13 48 chr15 42284939 42285249 -59095272 + AluSp SINE Alu 1 299 -14 13279 62 3 0 chr15 42285931 42287684 -59092837 - L1P LINE L1 -4366 1780 23 1022 168 5 25 chr15 42287728 42287925 -59092596 - AluSq SINE Alu -8 305 113 481 292 34 53 chr15 42288766 42288975 -59091546 - LTR16C LTR ERVL -235 256 52 433 205 49 0 chr15 42290421 42290543 -59089978 - L1MC5 LINE L1 -82 7879 7752 232 271 51 0 chr15 42291126 42291185 -59089336 - L2 LINE L2 -24 3289 3228 333 316 167 11 chr15 42291573 42291836 -59088685 + L1MC4a LINE L1 3889 4192 -1954 1088 207 22 78 chr15 42291837 42292108 -59088413 + MLT2B3 LTR ERVL 225 480 -74 2538 118 31 24 chr15 42292560 42292985 -59087536 - MSTA LTR MaLR 0 428 1 9994 74 10 30 chr15 42293665 42295051 -59085470 + SVA Other Other 29 1386 0 349 326 150 27 chr15 42295622 42296314 -59084207 + L1MC4a LINE L1 5004 5780 -748 251 246 0 14 chr15 42296348 42296417 -59084104 + (TA)n Simple_repeat Simple_repeat 1 68 0 772 293 61 53 chr15 42297396 42297755 -59082766 + LTR16A LTR ERVL 83 444 -6 436 276 39 32 chr15 42297761 42297917 -59082604 + HERV16 LTR ERVL 1 157 -4839 4497 157 26 5 chr15 42298155 42298965 -59081556 + L1MC1 LINE L1 5507 6333 0 925 367 8 25 chr15 42298984 42299461 -59081060 + L1PA15-16 LINE L1 54 522 -6317 11537 217 27 10 chr15 42299664 42303133 -59077388 + L1PA15-16 LINE L1 2550 6082 -767 2395 75 3 6 chr15 42303134 42303468 -59077053 - L1PA3 LINE L1 -2 6153 5821 3031 223 16 34 chr15 42303802 42304691 -59075830 + L1M4 LINE L1 3441 4313 -1833 1262 139 57 0 chr15 42304687 42304931 -59075590 + L1MB7 LINE L1 5616 5873 -311 * 2337 93 7 0 chr15 42304931 42305232 -59075289 + AluSx SINE Alu 1 303 -9 772 226 96 13 chr15 42305522 42305759 -59074762 + MIR SINE MIR 1 261 -1 2326 109 0 0 chr15 42305865 42306168 -59074353 + AluSx SINE Alu 2 304 -8 370 279 29 87 chr15 42306658 42306934 -59073587 - L2 LINE L2 -7 3265 3006 271 286 36 9 chr15 42307584 42307696 -59072825 + L1MC4a LINE L1 6055 6169 -1639 2023 143 3 0 chr15 42307786 42308086 -59072435 + AluJb SINE Alu 1 301 -11 702 207 83 0 chr15 42308328 42308497 -59072024 + MIR SINE MIR 59 241 -21 260 175 16 16 chr15 42309442 42309505 -59071016 - L1M3e LINE L1 -6448 582 520 1787 232 79 24 chr15 42309915 42310091 -59070430 - L1ME1 LINE L1 0 6184 6019 2440 120 19 0 chr15 42310091 42310459 -59070062 - THE1C LTR MaLR 0 375 1 1787 232 79 24 chr15 42310459 42310940 -59069581 - L1ME1 LINE L1 -165 6019 5486 250 327 34 42 chr15 42310983 42311246 -59069275 - HERV16 LTR ERVL -1995 3490 3230 1010 319 55 29 chr15 42311284 42312004 -59068517 - HERV16 LTR ERVL -1900 3096 2422 559 311 134 10 chr15 42312058 42312357 -59068164 - HERV16 LTR ERVL -3864 1132 797 533 314 39 24 chr15 42312469 42312724 -59067797 - HERV16 LTR ERVL -4332 664 406 290 322 13 7 chr15 42312804 42312956 -59067565 + (TA)n Simple_repeat Simple_repeat 2 154 0 411 283 59 47 chr15 42313022 42313254 -59067267 + HAL1b LINE L1 219 402 -946 1742 94 0 0 chr15 42314041 42314265 -59066256 + AluY SINE Alu 87 310 -1 2476 143 41 101 chr15 42314333 42314989 -59065532 + L1MA9 LINE L1 5696 6312 0 6182 58 10 0 chr15 42315390 42316217 -59064304 - L1PA6 LINE L1 0 6154 5320 247 240 0 0 chr15 42316277 42316327 -59064194 + L1MA10 LINE L1 932 981 -6584 3264 247 56 55 chr15 42316457 42318681 -59061840 + L1MA10 LINE L1 2086 4305 -3260 2262 110 0 0 chr15 42318681 42318980 -59061541 + AluSq SINE Alu 1 299 -14 3264 247 56 55 chr15 42318980 42319226 -59061295 + L1MA10 LINE L1 4305 4519 -3046 1682 185 6 28 chr15 42319226 42319545 -59060976 + AluJb SINE Alu 1 312 0 3264 247 56 55 chr15 42319545 42319582 -59060939 + L1MA10 LINE L1 4519 4554 -3011 728 254 8 58 chr15 42319588 42319848 -59060673 + L1PA15 LINE L1 426 672 -6115 253 337 50 20 chr15 42319862 42319963 -59060558 + L1PA15 LINE L1 779 882 -5905 3905 219 56 10 chr15 42320298 42320819 -59059702 + L1PA15 LINE L1 1228 1724 -5073 216 0 0 0 chr15 42320819 42320843 -59059678 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3905 219 56 10 chr15 42320843 42321864 -59058657 + L1PA15 LINE L1 1724 2844 -3953 5418 140 10 15 chr15 42321869 42323772 -59056749 + L1PA15 LINE L1 4898 6814 -2 2382 203 43 15 chr15 42323935 42324610 -59055911 + L1MA10 LINE L1 4563 5256 -2309 6534 142 40 23 chr15 42324610 42324934 -59055587 - Tigger1 DNA MER2_type 0 2418 2101 1513 202 13 23 chr15 42324934 42325236 -59055285 - AluJo SINE Alu -13 299 1 6534 142 40 23 chr15 42325236 42325728 -59054793 - Tigger1 DNA MER2_type -317 2101 1573 1494 204 6 54 chr15 42325728 42325905 -59054616 - AluJb SINE Alu -13 299 142 2140 138 0 0 chr15 42325905 42326203 -59054318 - AluSx SINE Alu -14 298 1 1494 204 6 54 chr15 42326203 42326339 -59054182 - AluJb SINE Alu -170 142 1 6534 142 40 23 chr15 42326339 42326717 -59053804 - Tigger1 DNA MER2_type -845 1573 1203 517 157 28 19 chr15 42326717 42326825 -59053696 + L1PA16 LINE L1 6038 6146 -20 745 117 124 0 chr15 42326846 42326983 -59053538 - Tigger1 DNA MER2_type -1656 762 609 3524 146 17 3 chr15 42326986 42327576 -59052945 - L1PA15 LINE L1 -1 6164 5567 85 20 0 0 chr15 42327588 42327687 -59052834 + AT_rich Low_complexity Low_complexity 1 99 0 2928 145 49 57 chr15 42327692 42328307 -59052214 - Tigger1 DNA MER2_type -1807 611 2 6143 181 32 21 chr15 42328308 42330217 -59050304 + L1MA10 LINE L1 5255 7199 -532 1669 237 119 30 chr15 42330221 42330718 -59049803 - MLT2B3 LTR ERVL -8 546 6 1586 199 54 70 chr15 42330719 42331276 -59049245 + L1MA10 LINE L1 7206 7753 0 28 0 0 0 chr15 42333521 42333549 -59046972 + AT_rich Low_complexity Low_complexity 1 28 0 994 153 90 0 chr15 42333922 42334111 -59046410 - L1PA15 LINE L1 -181 5984 5779 1803 173 51 36 chr15 42334114 42334654 -59045867 + MLT2A2 LTR ERVL 3 554 0 5446 183 55 2 chr15 42334655 42336395 -59044126 - L1PA15 LINE L1 -369 5797 3984 1013 309 32 22 chr15 42337414 42337816 -59042705 - LTR16A LTR ERVL -24 426 21 2313 102 0 0 chr15 42338079 42338373 -59042148 - AluY SINE Alu -17 294 1 24 0 0 0 chr15 42339923 42339947 -59040574 + AT_rich Low_complexity Low_complexity 1 24 0 517 161 0 2 chr15 42340018 42340125 -59040396 + L1MC3 LINE L1 7190 7489 -506 442 285 76 7 chr15 42340125 42340269 -59040252 - LTR28 LTR ERV1 0 1020 867 821 196 121 86 chr15 42340284 42340784 -59039737 - LTR1B LTR ERV1 -37 983 422 703 254 116 73 chr15 42341051 42341449 -59039072 - LTR1B LTR ERV1 -411 415 1 1974 185 36 25 chr15 42341449 42341898 -59038623 + L1MC3 LINE L1 7275 7728 -57 6624 22 19 0 chr15 42341905 42342724 -59037797 - L1PA3 LINE L1 -1 6154 5320 553 258 16 0 chr15 42342784 42342908 -59037613 + L1M1 LINE L1 932 1057 -6508 1145 150 14 19 chr15 42342912 42343119 -59037402 + MER52A-int LTR ERV1 1308 1513 -5578 4736 165 44 24 chr15 42343204 42344631 -59035890 + MER52A-int LTR ERV1 1006 4817 -2179 2583 121 28 26 chr15 42344621 42345085 -59035436 + MER52A-int LTR ERV1 2300 2764 -2453 * 941 105 20 0 chr15 42345082 42345234 -59035287 + MER52A-int LTR ERV1 5920 6074 -1131 * 1405 154 55 31 chr15 42345236 42345528 -59034993 + MER52A-int LTR ERV1 4918 5216 -1 7124 169 149 39 chr15 42345529 42347110 -59033411 + MER52A LTR ERV1 1 1755 0 637 224 73 24 chr15 42347140 42347228 -59033293 - L1MB7 LINE L1 -53 6131 6049 2273 116 0 0 chr15 42347228 42347521 -59033000 + AluSg SINE Alu 6 298 -12 637 224 73 24 chr15 42347521 42347678 -59032843 - L1MB7 LINE L1 -135 6049 5874 300 27 0 0 chr15 42347678 42347715 -59032806 + (TG)n Simple_repeat Simple_repeat 2 38 0 344 171 23 34 chr15 42347733 42347821 -59032700 - AluSp/q SINE Alu -9 294 208 1129 225 47 108 chr15 42348351 42349146 -59031375 - L1M4 LINE L1 -2865 3779 3032 424 271 39 58 chr15 42349374 42349632 -59030889 - L1M4 LINE L1 -5924 618 366 235 185 46 0 chr15 42349883 42349948 -59030573 - L1M4 LINE L1 -6420 122 55 225 65 0 0 chr15 42350397 42350428 -59030093 + (CAAAAA)n Simple_repeat Simple_repeat 3 33 0 721 172 52 15 chr15 42350463 42350597 -59029924 + FLAM_C SINE Alu 4 142 -1 612 158 7 48 chr15 42351881 42352027 -59028494 - L1MA4 LINE L1 -59 6241 6102 2092 138 3 0 chr15 42353170 42353461 -59027060 - AluSx SINE Alu -20 292 1 973 218 69 22 chr15 42355114 42355273 -59025248 + L1MA1 LINE L1 17 196 -7369 2654 165 40 70 chr15 42355273 42355904 -59024617 - LTR9 LTR ERV1 0 612 1 973 218 69 22 chr15 42355904 42356019 -59024502 + L1MA1 LINE L1 196 304 -7261 17839 163 61 13 chr15 42356483 42363465 -59017056 + L1MA1 LINE L1 176 7534 -187 1851 141 18 3 chr15 42363465 42363749 -59016772 - AluSx SINE Alu -24 288 1 17839 163 61 13 chr15 42363749 42363947 -59016574 + L1MA1 LINE L1 7534 7721 0 580 224 6 6 chr15 42366652 42366808 -59013713 + (TA)n Simple_repeat Simple_repeat 2 157 0 1349 162 15 24 chr15 42369228 42369478 -59011043 - MSTA LTR MaLR 0 428 161 1679 125 14 25 chr15 42369727 42370006 -59010515 + L1PA15 LINE L1 5743 6018 -147 3486 108 16 6 chr15 42370133 42370642 -59009879 + MER75 DNA T2_type 1 514 0 205 298 0 0 chr15 42371483 42371540 -59008981 + T-rich Low_complexity Low_complexity 1 57 0 410 313 15 15 chr15 42371540 42371674 -59008847 - L2 LINE L2 -5 3267 3134 209 224 0 20 chr15 42372163 42372212 -59008309 + A-rich Low_complexity Low_complexity 2 49 0 4264 162 69 22 chr15 42372646 42373587 -59006934 - L1P4 LINE L1 -620 5545 4539 2527 57 0 0 chr15 42373587 42373885 -59006636 + AluY SINE Alu 1 298 -13 4264 162 69 22 chr15 42373885 42374055 -59006466 - L1P4 LINE L1 -1626 4539 4379 452 114 0 0 chr15 42374170 42374240 -59006281 + LTR23 LTR ERV1 368 437 0 510 179 0 0 chr15 42374240 42374335 -59006186 - L1M4 LINE L1 -723 5455 5361 2032 186 64 66 chr15 42374335 42374863 -59005658 - Tigger1 DNA MER2_type 0 2418 1892 659 211 8 0 chr15 42374864 42374997 -59005524 - FLAM_C SINE Alu -1 142 9 2917 103 11 46 chr15 42375001 42375328 -59005193 - Tigger1 DNA MER2_type -503 1915 1609 2510 55 0 0 chr15 42375328 42375621 -59004900 - AluY SINE Alu -18 293 1 2917 103 11 46 chr15 42375621 42375770 -59004751 - Tigger1 DNA MER2_type -809 1609 1456 1523 134 19 4 chr15 42375771 42376039 -59004482 - L1P LINE L1 -1586 4560 4289 188 290 108 21 chr15 42376395 42376488 -59004033 - MIR SINE MIR -77 185 85 304 325 24 24 chr15 42377652 42377778 -59002743 - LTR16C LTR ERVL -156 335 210 5989 218 29 35 chr15 42377904 42379541 -59000980 - L1P4 LINE L1 -2189 3957 2330 1949 171 26 11 chr15 42380910 42381291 -58999230 - L1MB5 LINE L1 -304 5870 5484 1235 176 7 37 chr15 42381311 42381583 -58998938 + LTR56 LTR ERV1 1 264 -181 551 345 121 42 chr15 42382179 42382724 -58997797 - L3 LINE CR1 -3 1574 987 2385 97 20 6 chr15 42382894 42383244 -58997277 - THE1A LTR MaLR 0 355 1 197 358 21 21 chr15 42383435 42383530 -58996991 + MIR SINE MIR 50 144 -64 2147 262 49 31 chr15 42384052 42384217 -58996304 + L1M4 LINE L1 3064 3225 -2921 2327 87 0 3 chr15 42384217 42384527 -58995994 + AluY SINE Alu 1 309 -2 2147 262 49 31 chr15 42384527 42385158 -58995363 + L1M4 LINE L1 3225 3874 -2272 1584 207 53 79 chr15 42385239 42385555 -58994966 + L1M4 LINE L1 4704 4998 -1148 1736 183 0 3 chr15 42385555 42385839 -58994682 + AluJo SINE Alu 4 286 -26 1584 207 53 79 chr15 42385839 42386141 -58994380 + L1M4 LINE L1 4998 5306 -840 531 196 84 56 chr15 42386175 42386354 -58994167 + L1ME1 LINE L1 4574 4757 -1389 1445 83 5 0 chr15 42386355 42386547 -58993974 + AluY SINE Alu 119 311 0 2340 218 99 28 chr15 42386630 42387501 -58993020 + L1ME1 LINE L1 5180 6122 -44 2122 101 109 3 chr15 42387656 42388023 -58992498 - L1PA13 LINE L1 -4 6159 5754 1108 107 0 7 chr15 42388031 42388181 -58992340 - AluSq/x SINE Alu -163 149 1 446 103 0 0 chr15 42388182 42388250 -58992271 - L1PA13 LINE L1 -1815 4331 4264 487 161 23 0 chr15 42388251 42388338 -58992183 + AluSp/q SINE Alu 168 256 -57 346 299 88 69 chr15 42388489 42388706 -58991815 - LTR16C LTR ERVL -82 409 189 2292 196 48 38 chr15 42388740 42389266 -58991255 - MER44D DNA MER2_type -18 587 2 535 180 5 111 chr15 42389644 42389833 -58990688 + L1MB3 LINE L1 4226 4394 -1752 456 183 9 43 chr15 42389908 42390023 -58990498 + LTR7 LTR ERV1 302 412 -38 3401 195 44 10 chr15 42390034 42390624 -58989897 + L1MB3 LINE L1 4389 4957 -1226 2275 115 0 3 chr15 42390624 42390929 -58989592 - AluSq SINE Alu -7 306 3 3401 195 44 10 chr15 42390929 42391827 -58988694 + L1MB3 LINE L1 4957 5934 -249 345 197 0 0 chr15 42392750 42392821 -58987700 + A-rich Low_complexity Low_complexity 1 71 0 379 331 139 12 chr15 42394137 42394309 -58986212 - MIR SINE MIR -49 213 20 200 98 0 49 chr15 42394494 42394535 -58985986 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 274 260 1 0 chr15 42395795 42395915 -58984606 - MER5A DNA MER1_type -79 110 9 5227 113 41 1 chr15 42396611 42397417 -58983104 - L1PA13 LINE L1 -9 6154 5317 336 258 33 67 chr15 42397470 42397590 -58982931 - MIR SINE MIR 0 262 147 502 270 107 17 chr15 42397723 42397901 -58982620 - MIR SINE MIR -15 247 54 418 293 40 19 chr15 42397974 42398171 -58982350 - L1MC/D LINE L1 -511 5659 5496 317 276 117 15 chr15 42398235 42398500 -58982021 - L1MC/D LINE L1 -840 5306 5015 503 287 52 72 chr15 42398849 42399100 -58981421 + LTR16C LTR ERVL 238 483 -8 184 135 19 19 chr15 42399288 42399340 -58981181 + (TA)n Simple_repeat Simple_repeat 2 53 0 180 0 0 0 chr15 42399379 42399399 -58981122 + (TG)n Simple_repeat Simple_repeat 2 21 0 447 322 17 17 chr15 42399499 42399679 -58980842 + HERVL LTR ERVL 361 540 -4456 5109 207 62 19 chr15 42399964 42401262 -58979259 + Charlie1a DNA MER1_type 1 1354 -101 1236 94 18 0 chr15 42401313 42401484 -58979037 + L1PA8 LINE L1 5988 6161 -11 733 190 28 38 chr15 42401493 42401704 -58978817 + Charlie1 DNA MER1_type 2552 2760 -1 1862 338 48 22 chr15 42401977 42403030 -58977491 + HERVL LTR ERVL 1453 2533 -3121 381 372 14 50 chr15 42403093 42403456 -58977065 + HERVL LTR ERVL 4853 5202 -452 617 245 117 12 chr15 42403923 42404171 -58976350 + MLT1G LTR MaLR 5 267 -263 232 251 137 50 chr15 42404332 42404633 -58975888 - L1MC/D LINE L1 -1599 4547 4211 705 302 101 68 chr15 42404633 42405137 -58975384 - LTR33 LTR ERVL 0 521 1 232 251 137 50 chr15 42405137 42405177 -58975344 - L1MC/D LINE L1 -1935 4211 4176 4911 162 39 31 chr15 42405220 42406239 -58974282 - L1MA9 LINE L1 -1 6311 5285 212 213 16 0 chr15 42406283 42406344 -58974177 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 212 238 32 16 chr15 42406837 42406900 -58973621 + L3 LINE CR1 639 702 -875 305 190 25 0 chr15 42407022 42407101 -58973420 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 502 308 29 62 chr15 42407353 42407587 -58972934 + MIR SINE MIR 18 241 -21 240 264 0 0 chr15 42409259 42409312 -58971209 + MIR3 SINE MIR 151 203 -5 249 294 67 50 chr15 42409317 42409497 -58971024 + L3 LINE CR1 1195 1377 -200 476 238 0 9 chr15 42409810 42409915 -58970606 + MER5B DNA MER1_type 2 105 -73 2420 65 0 0 chr15 42410527 42410837 -58969684 + L1PA7 LINE L1 5840 6149 -5 971 177 33 6 chr15 42412877 42413058 -58967463 + MER2 DNA MER2_type 2 187 -158 1481 245 45 5 chr15 42414886 42415265 -58965256 + MSTD LTR MaLR 3 396 0 1741 103 4 0 chr15 42416919 42417153 -58963368 + THE1C LTR MaLR 1 235 -140 21 0 0 0 chr15 42417679 42417700 -58962821 + AT_rich Low_complexity Low_complexity 1 21 0 6261 109 27 0 chr15 42417723 42418796 -58961725 - L1PB1 LINE L1 0 6151 5045 23 54 0 0 chr15 42418815 42418852 -58961669 + AT_rich Low_complexity Low_complexity 1 37 0 25 99 0 0 chr15 42418938 42419019 -58961502 + AT_rich Low_complexity Low_complexity 1 81 0 319 269 59 42 chr15 42419108 42419227 -58961294 - ERVL LTR ERVL -3511 2253 2133 1188 171 12 29 chr15 42420736 42420981 -58959540 + L1M3 LINE L1 5351 5591 -580 1292 235 63 23 chr15 42421155 42421832 -58958689 - L1MCb LINE L1 -3583 2981 2286 2050 236 20 35 chr15 42421924 42422475 -58958046 + LTR55 LTR ERV 1 543 -5 1213 207 73 25 chr15 42422478 42422982 -58957539 - L1MCb LINE L1 -4418 2146 1748 1428 194 41 77 chr15 42423023 42423263 -58957258 - L1MCb LINE L1 -4897 1149 1058 236 105 26 0 chr15 42423263 42423301 -58957220 + U2 snRNA snRNA 5 43 -145 1428 194 41 77 chr15 42423301 42423658 -58956863 - L1MCb LINE L1 -4988 1058 690 1022 139 7 0 chr15 42423675 42423826 -58956695 - AluSp SINE Alu -26 287 136 1768 248 93 31 chr15 42423827 42424493 -58956028 - L1MCb LINE L1 -5338 707 1 4099 255 59 45 chr15 42424514 42426011 -58954510 - L1MEc LINE L1 -2295 3920 2444 2238 67 0 14 chr15 42426011 42426294 -58954227 - AluY SINE Alu 0 311 33 4099 255 59 45 chr15 42426294 42426407 -58954114 - L1MEc LINE L1 -3771 2444 2334 2070 104 0 72 chr15 42426407 42426725 -58953796 - AluSq SINE Alu -18 295 1 4099 255 59 45 chr15 42426725 42427110 -58953411 - L1MEc LINE L1 -3881 2334 1956 2016 147 138 5 chr15 42427110 42427546 -58952975 - LTR54B LTR ERV1 -1 497 4 4099 255 59 45 chr15 42427546 42428389 -58952132 - L1MEc LINE L1 -4259 1956 1043 926 199 77 11 chr15 42428444 42428716 -58951805 - L1MEc LINE L1 -5459 937 648 1169 346 20 9 chr15 42428717 42429171 -58951350 - L1MEc LINE L1 -5799 597 139 4208 106 8 0 chr15 42429613 42430215 -58950306 + L1PA14 LINE L1 5552 6158 -3 207 0 0 0 chr15 42431193 42431216 -58949305 + (TG)n Simple_repeat Simple_repeat 2 24 0 513 286 6 24 chr15 42431241 42431409 -58949112 + LTR33 LTR ERVL 1 165 -356 2199 247 68 47 chr15 42432971 42435123 -58945398 + L1M3e LINE L1 1 3028 -4078 1800 236 31 12 chr15 42435123 42435547 -58944974 + MSTB1 LTR MaLR 1 432 0 2199 247 68 47 chr15 42435547 42435671 -58944850 + L1M3e LINE L1 3028 3148 -3958 9576 195 55 11 chr15 42435753 42438121 -58942400 + L1M3e LINE L1 3142 5613 -1493 288 324 14 7 chr15 42439065 42439204 -58941317 - LTR16C LTR ERVL -1 490 351 1867 233 136 14 chr15 42439992 42440477 -58940044 - MLT2F LTR ERVL -119 544 1 591 264 58 0 chr15 42441806 42441961 -58938560 - LTR16C LTR ERVL -4 487 324 243 257 0 14 chr15 42442004 42442074 -58938447 - LTR16B LTR ERVL -292 172 104 231 203 122 14 chr15 42444277 42444351 -58936170 + MIR SINE MIR 74 155 -107 1735 112 42 0 chr15 42445334 42445620 -58934901 - L1MA6 LINE L1 0 6300 6003 317 298 36 0 chr15 42445690 42445774 -58934747 + MIR3 SINE MIR 71 157 -51 588 235 12 137 chr15 42446130 42446385 -58934136 - MER58A DNA MER1_type -1 223 1 388 288 42 47 chr15 42447707 42447898 -58932623 - L2 LINE L2 0 3313 3124 363 336 9 0 chr15 42447899 42448012 -58932509 - MER81 DNA DNA 0 114 1 1882 248 82 44 chr15 42451021 42451755 -58928766 - L1ME LINE L1 -5263 807 46 1889 161 0 33 chr15 42451866 42452171 -58928350 + AluSx SINE Alu 1 295 -17 2691 193 58 28 chr15 42453109 42453725 -58926796 - LTR27 LTR ERV1 0 636 2 292 330 127 22 chr15 42453970 42454195 -58926326 - MIR SINE MIR -1 261 18 318 278 44 0 chr15 42454765 42454855 -58925666 + MIR3 SINE MIR 104 197 -11 21 0 0 0 chr15 42455499 42455520 -58925001 + AT_rich Low_complexity Low_complexity 1 21 0 9503 144 171 12 chr15 42456998 42458727 -58921794 + L1PA12 LINE L1 1 2004 -5577 3064 271 125 6 chr15 42458725 42459547 -58920974 + L1PA13 LINE L1 339 1258 -5529 * 500 204 0 0 chr15 42459550 42459638 -58920883 + L1PA13 LINE L1 1396 1483 -5304 * 2206 181 18 0 chr15 42459637 42460080 -58920441 + L1PA13 LINE L1 3461 3911 -2886 * 5009 96 13 4 chr15 42460075 42460786 -58919735 + L1PA10 LINE L1 5436 6152 -16 15095 208 22 30 chr15 42460926 42465219 -58915302 - L1P3 LINE L1 -2185 4276 8 2003 221 29 58 chr15 42465228 42465851 -58914670 - L1M4 LINE L1 -782 5364 4760 313 118 0 0 chr15 42465886 42465937 -58914584 - L1MA8 LINE L1 -5 6286 6236 3832 179 7 31 chr15 42466008 42466964 -58913557 - L1MA4 LINE L1 -181 6110 5160 1901 189 27 2 chr15 42466957 42467365 -58913156 + L1MA4 LINE L1 4735 5152 -994 * 6794 232 84 22 chr15 42467359 42470672 -58909849 - L1MA8 LINE L1 -48 6243 2718 2408 87 0 6 chr15 42471587 42471899 -58908622 + AluY SINE Alu 1 310 -1 265 268 0 12 chr15 42472627 42472709 -58907812 - LTR16C LTR ERVL -4 487 407 26 64 0 0 chr15 42473384 42473431 -58907090 + AT_rich Low_complexity Low_complexity 1 47 0 2044 128 4 0 chr15 42473465 42473772 -58906749 + AluSx SINE Alu 1 308 0 190 235 59 123 chr15 42473985 42474172 -58906349 - L3 LINE CR1 -182 1395 1221 249 33 0 0 chr15 42474438 42474468 -58906053 + (T)n Simple_repeat Simple_repeat 1 30 0 359 323 39 43 chr15 42474817 42475227 -58905294 - MLT2F LTR ERVL 0 663 211 2453 117 13 122 chr15 42475888 42476278 -58904243 + LTR12 LTR ERV1 1 317 -397 1811 84 26 131 chr15 42476278 42476621 -58903900 - AluYb8 SINE Alu -1 307 1 2453 117 13 122 chr15 42476621 42476770 -58903751 + LTR12 LTR ERV1 317 481 -233 270 262 54 7 chr15 42477331 42477546 -58902975 + (TTTAA)n Simple_repeat Simple_repeat 1 225 0 3082 144 71 76 chr15 42478571 42479364 -58901157 - L1MA9 LINE L1 -2 6310 5522 3917 203 36 18 chr15 42479471 42480812 -58899709 - L1PA13 LINE L1 -4023 2774 1397 3681 214 55 25 chr15 42481000 42481865 -58898656 - L1PA13 LINE L1 -5895 892 2 623 292 63 47 chr15 42482195 42483145 -58897376 - L1MEd LINE L1 -4705 1605 602 225 309 143 37 chr15 42483190 42483407 -58897114 - L1MEd LINE L1 -5612 507 268 336 330 76 13 chr15 42483745 42484048 -58896473 - L1ME LINE L1 -348 5773 5452 261 231 356 0 chr15 42485859 42485967 -58894554 + MIR SINE MIR 37 180 -28 829 298 59 58 chr15 42486410 42487015 -58893506 + L2 LINE L2 2642 3305 -8 3843 122 64 73 chr15 42487380 42488161 -58892360 + LTR1 LTR ERV1 12 785 0 1295 55 114 64 chr15 42488963 42489182 -58891339 + MER30 DNA MER1_type 1 230 0 2155 131 0 10 chr15 42490397 42490702 -58889819 + AluSx SINE Alu 3 304 -8 211 329 57 0 chr15 42490892 42490962 -58889559 + MIR SINE MIR 39 112 -150 2136 106 3 14 chr15 42491142 42491434 -58889087 + AluSg SINE Alu 1 289 -21 555 262 85 13 chr15 42491452 42491644 -58888877 + MIR SINE MIR 15 221 -41 665 296 126 14 chr15 42492753 42492976 -58887545 + MIR SINE MIR 14 261 -1 320 323 10 0 chr15 42493233 42493329 -58887192 - MIR SINE MIR -111 151 55 207 0 0 0 chr15 42494376 42494399 -58886122 + (T)n Simple_repeat Simple_repeat 1 23 0 424 249 62 110 chr15 42495355 42495628 -58884893 - MER112 DNA MER1_type 0 260 1 280 133 48 24 chr15 42496240 42496323 -58884198 + (TA)n Simple_repeat Simple_repeat 1 85 0 412 342 49 4 chr15 42496686 42496911 -58883610 + LTR16C LTR ERVL 4 238 -253 3870 226 75 43 chr15 42496917 42498003 -58882518 + MLT1A1-int LTR MaLR 616 1735 0 1896 174 22 16 chr15 42498003 42498366 -58882155 + MLT1A1 LTR MaLR 1 365 0 2009 138 0 0 chr15 42498375 42498666 -58881855 + AluSx SINE Alu 1 291 -21 369 0 0 0 chr15 42500101 42500142 -58880379 + (TG)n Simple_repeat Simple_repeat 2 42 0 463 265 235 10 chr15 42500440 42500636 -58879885 - MIR SINE MIR -3 259 20 329 329 29 15 chr15 42500842 42500979 -58879542 + MIR SINE MIR 121 259 -3 219 311 48 17 chr15 42501008 42501145 -58879376 - MIR SINE MIR -64 144 15 212 300 0 0 chr15 42502320 42502370 -58878151 - L2 LINE L2 -4 3268 3219 569 211 126 53 chr15 42504390 42504559 -58875962 + MER5A DNA MER1_type 4 186 -3 1445 209 78 62 chr15 42505017 42505266 -58875255 - MLT1D LTR MaLR 0 505 261 2161 136 0 0 chr15 42505266 42505567 -58874954 - AluSx SINE Alu -9 303 3 1445 209 78 62 chr15 42505567 42505814 -58874707 - MLT1D LTR MaLR -244 261 1 413 228 53 18 chr15 42506256 42506370 -58874151 - MIR3 SINE MIR -7 201 84 305 174 196 0 chr15 42507988 42508080 -58872441 + L1ME4a LINE L1 5974 6083 -38 691 285 88 0 chr15 42509363 42509591 -58870930 + MIR SINE MIR 15 262 0 209 57 29 0 chr15 42509687 42509722 -58870799 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 597 291 69 34 chr15 42509829 42510079 -58870442 - MIR SINE MIR 0 262 9 222 290 18 41 chr15 42510840 42511009 -58869512 + (CTTAT)n Simple_repeat Simple_repeat 3 167 0 * 317 262 16 44 chr15 42510883 42511066 -58869455 + T-rich Low_complexity Low_complexity 2 179 0 396 252 67 0 chr15 42512090 42512209 -58868312 + MIR SINE MIR 65 191 -71 322 279 201 0 chr15 42513431 42513585 -58866936 - MIR SINE MIR -15 247 63 22 0 0 0 chr15 42515649 42515671 -58864850 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr15 42515963 42515987 -58864534 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr15 42516042 42516070 -58864451 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr15 42516144 42516176 -58864345 + AT_rich Low_complexity Low_complexity 1 32 0 905 336 78 15 chr15 42516783 42517244 -58863277 - MLT2F LTR ERVL -157 506 17 1027 285 55 4 chr15 42517481 42518071 -58862450 - ERVL-F LTR ERVL -329 5435 4782 2696 233 45 34 chr15 42518131 42519394 -58861127 - L1ME1 LINE L1 -5 6397 5124 2343 71 0 52 chr15 42519394 42519719 -58860802 - AluY SINE Alu -3 308 1 386 276 15 4 chr15 42519777 42519924 -58860597 - L1ME1 LINE L1 -3857 2525 2381 23 33 0 0 chr15 42519944 42519974 -58860547 + AT_rich Low_complexity Low_complexity 1 30 0 348 288 40 68 chr15 42520303 42520626 -58859895 - MLT1I LTR MaLR -8 401 88 681 295 36 39 chr15 42521957 42522216 -58858305 + MIR SINE MIR 16 261 -1 183 391 0 0 chr15 42522248 42522317 -58858204 + L2 LINE L2 2275 2343 -971 27 29 0 0 chr15 42523315 42523349 -58857172 + AT_rich Low_complexity Low_complexity 1 34 0 243 221 26 0 chr15 42523917 42523994 -58856527 + (TA)n Simple_repeat Simple_repeat 1 79 0 6814 44 1 0 chr15 42524254 42525090 -58855431 - L1P LINE L1 -1932 4214 3378 4924 30 0 0 chr15 42525090 42525663 -58854858 + L1PA3 LINE L1 5579 6152 -3 266 86 0 0 chr15 42525746 42525781 -58854740 + Tigger1 DNA MER2_type 2061 2095 -323 2369 189 6 2 chr15 42526596 42527103 -58853418 - L1PA16 LINE L1 -1336 4810 4302 2071 216 12 12 chr15 42527101 42527583 -58852938 + L1PA16 LINE L1 4804 5285 -861 * 636 105 0 32 chr15 42527592 42527687 -58852834 + FLAM_C SINE Alu 36 127 -16 4823 150 6 4 chr15 42527689 42528476 -58852045 + L1PA16 LINE L1 5340 6128 -38 1078 179 26 33 chr15 42528515 42528788 -58851733 - L1MB7 LINE L1 0 6184 5914 23 33 0 0 chr15 42528797 42528827 -58851694 + AT_rich Low_complexity Low_complexity 1 30 0 1128 185 45 0 chr15 42528840 42529062 -58851459 - L1MB7 LINE L1 -265 5919 5688 907 184 65 5 chr15 42529053 42529270 -58851251 - L1MB7 LINE L1 -1006 5140 4911 * 387 211 0 0 chr15 42530173 42530268 -58850253 + (TA)n Simple_repeat Simple_repeat 1 95 0 309 278 0 22 chr15 42530270 42530360 -58850161 - L1MC4 LINE L1 -1339 6703 6616 207 235 0 44 chr15 42530363 42530431 -58850090 + (TATG)n Simple_repeat Simple_repeat 4 68 0 396 332 197 0 chr15 42531318 42531511 -58849010 + MIR SINE MIR 14 244 -18 5414 45 3 3 chr15 42531573 42532247 -58848274 - L1PA3 LINE L1 -2 6153 5480 1573 109 0 5 chr15 42532369 42532590 -58847931 + AluSc SINE Alu 82 301 -8 404 234 114 13 chr15 42532633 42532791 -58847730 + L1MC4a LINE L1 5738 5911 -1897 491 202 8 0 chr15 42532912 42533031 -58847490 + (TA)n Simple_repeat Simple_repeat 1 120 0 393 300 46 8 chr15 42533049 42533179 -58847342 - MIR SINE MIR -88 174 40 1622 224 74 2 chr15 42533505 42533912 -58846609 - MER63B DNA MER1_type 0 436 1 2393 87 0 0 chr15 42534159 42534468 -58846053 - AluY SINE Alu -2 309 1 1539 93 9 0 chr15 42534700 42534914 -58845607 - AluSg/x SINE Alu -10 302 87 505 353 75 18 chr15 42535015 42535454 -58845067 - L2 LINE L2 -1015 2299 1836 396 59 0 0 chr15 42535822 42535873 -58844648 + (CA)n Simple_repeat Simple_repeat 1 51 0 1729 163 30 7 chr15 42536677 42536978 -58843543 + AluJb SINE Alu 1 308 -4 287 281 0 97 chr15 42537865 42537937 -58842584 - MIR SINE MIR 0 262 203 2287 93 3 0 chr15 42537937 42538238 -58842283 - AluSq SINE Alu -11 302 1 287 281 0 97 chr15 42538238 42538279 -58842242 - MIR SINE MIR -59 203 160 306 314 140 69 chr15 42538512 42539265 -58841256 + L2 LINE L2 2405 3262 -10 535 368 104 35 chr15 42539282 42540079 -58840442 + L2 LINE L2 2229 3086 -186 226 134 0 75 chr15 42542165 42542232 -58838289 + (TTTTTA)n Simple_repeat Simple_repeat 3 64 0 331 300 42 33 chr15 42542698 42542818 -58837703 + L2 LINE L2 3191 3311 -2 278 352 94 8 chr15 42543108 42543236 -58837285 + L2 LINE L2 3132 3270 -2 214 329 162 18 chr15 42544233 42544400 -58836121 - L3b LINE CR1 -210 1373 1183 353 307 13 0 chr15 42545559 42545634 -58834887 + MER91A DNA MER1_type 2 77 -119 1680 149 60 46 chr15 42547472 42547633 -58832888 + THE1C LTR MaLR 1 158 -217 1975 83 8 0 chr15 42547633 42547886 -58832635 - AluSq SINE Alu -9 304 50 1680 149 60 46 chr15 42547886 42548094 -58832427 + THE1C LTR MaLR 158 375 0 547 271 7 7 chr15 42548153 42548297 -58832224 + MIR3 SINE MIR 60 203 -5 22 0 0 0 chr15 42548846 42548868 -58831653 + AT_rich Low_complexity Low_complexity 1 22 0 479 211 0 10 chr15 42549660 42549764 -58830757 - MIR SINE MIR 0 262 160 272 368 14 49 chr15 42550483 42550627 -58829894 + MIR SINE MIR 29 167 -95 35 41 0 0 chr15 42550740 42550789 -58829732 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr15 42551107 42551135 -58829386 + AT_rich Low_complexity Low_complexity 1 28 0 197 306 0 0 chr15 42552061 42552110 -58828411 - MER5B DNA MER1_type -129 49 1 1501 167 46 25 chr15 42553023 42553305 -58827216 - AluJo SINE Alu -15 297 10 1113 299 144 11 chr15 42555819 42556529 -58823992 + L2 LINE L2 2497 3310 -3 219 221 47 35 chr15 42556909 42556995 -58823526 - MIR SINE MIR -46 216 130 2903 164 44 2 chr15 42557472 42558014 -58822507 - L1MC3 LINE L1 -8 7777 7213 22 35 0 0 chr15 42558405 42558434 -58822087 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr15 42558510 42558532 -58821989 + AT_rich Low_complexity Low_complexity 1 22 0 1228 202 0 18 chr15 42561786 42562009 -58818512 - AluJo SINE Alu -93 219 1 4614 135 12 1 chr15 42562285 42563033 -58817488 - L1PA16 LINE L1 0 6166 5411 1433 202 24 9 chr15 42563134 42563471 -58817050 - L1PA16 LINE L1 -1320 4826 4485 12356 238 41 23 chr15 42563734 42568788 -58811733 + L1PA15 LINE L1 808 5951 -1633 811 195 38 5 chr15 42568788 42568973 -58811548 + L1PA15 LINE L1 6318 6508 -1076 5257 130 28 6 chr15 42568975 42569830 -58810691 + L1PA15 LINE L1 6723 7596 -7 487 222 0 0 chr15 42569970 42570060 -58810461 - AluS SINE Alu -223 90 1 2367 94 0 0 chr15 42570552 42570860 -58809661 + AluSc SINE Alu 1 308 -1 3391 74 37 8 chr15 42570932 42571419 -58809102 - L1PA7 LINE L1 -1 6153 5653 3315 66 0 0 chr15 42571419 42571861 -58808660 + L1P LINE L1 4861 5302 -844 7211 174 23 16 chr15 42572522 42572808 -58807713 - L1MA4 LINE L1 0 7362 7080 2250 112 0 6 chr15 42572808 42573122 -58807399 - AluSx SINE Alu 0 312 1 7211 174 23 16 chr15 42573122 42574371 -58806150 - L1MA4 LINE L1 -282 7080 5836 182 37 37 0 chr15 42574371 42574398 -58806123 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7211 174 23 16 chr15 42574398 42575300 -58805221 - L1MA4 LINE L1 -1526 5836 4942 6360 89 12 0 chr15 42575300 42576491 -58804030 - L1PA10 LINE L1 -2 6166 4979 2285 188 12 82 chr15 42576506 42577076 -58803445 - L1P3 LINE L1 -5302 1159 630 5415 236 58 38 chr15 42577078 42578949 -58801572 - L1MA4 LINE L1 -2256 4952 3255 2161 102 0 11 chr15 42578949 42579255 -58801266 + AluSg SINE Alu 1 303 0 5415 236 58 38 chr15 42579255 42580846 -58799675 - L1MA4 LINE L1 -3953 3255 1699 1333 311 64 37 chr15 42581051 42581757 -58798764 - L1MA4 LINE L1 -6164 1045 10 327 307 100 42 chr15 42581886 42582517 -58798004 + L1ME3A LINE L1 5293 5944 -226 2104 125 0 7 chr15 42582960 42583257 -58797264 - AluSg SINE Alu -15 295 1 22 0 0 0 chr15 42583305 42583327 -58797194 + AT_rich Low_complexity Low_complexity 1 22 0 327 336 8 0 chr15 42583341 42583469 -58797052 + (CA)n Simple_repeat Simple_repeat 2 130 0 1979 144 21 0 chr15 42583568 42583908 -58796613 - L1PA13 LINE L1 -14 6149 5803 976 203 147 0 chr15 42585819 42586085 -58794436 + MER33 DNA MER1_type 1 305 -19 434 300 0 0 chr15 42586122 42586242 -58794279 - MER103 DNA DNA -46 120 1 589 303 23 46 chr15 42586752 42586970 -58793551 - MIR SINE MIR 0 262 50 350 321 92 41 chr15 42587940 42588211 -58792310 + ERVL LTR ERVL 3412 3696 -2068 968 328 63 11 chr15 42588215 42588566 -58791955 - LTR16A LTR ERVL -5 445 77 1152 291 138 54 chr15 42588584 42589422 -58791099 + ERVL LTR ERVL 3763 4671 -1093 432 342 75 12 chr15 42589657 42589988 -58790533 + ERVL LTR ERVL 5016 5413 -290 272 211 70 28 chr15 42590969 42591040 -58789481 + LTR67 LTR ERVL 110 183 -374 9525 57 17 1 chr15 42591058 42592294 -58788227 - L1PA4 LINE L1 -3265 2881 1626 19616 47 6 0 chr15 42592294 42595554 -58784967 + L1PA4 LINE L1 2876 6147 -8 564 320 39 58 chr15 42595576 42595935 -58784586 + LTR67 LTR ERVL 206 557 0 2020 147 3 3 chr15 42596585 42596884 -58783637 + AluSx SINE Alu 1 299 -13 901 265 100 0 chr15 42598385 42598645 -58781876 + LTR16A1 LTR ERVL 168 453 -4 191 322 8 68 chr15 42598650 42598768 -58781753 - L2 LINE L2 -229 3043 2933 2770 154 38 7 chr15 42598825 42599697 -58780824 - L1PB4 LINE L1 -43 6113 5068 233 347 94 28 chr15 42600006 42600219 -58780302 + L2 LINE L2 2812 3038 -234 971 221 18 4 chr15 42600270 42600496 -58780025 - AluJo SINE Alu -2 310 82 337 280 193 20 chr15 42601008 42601158 -58779363 + MIR SINE MIR 8 183 -79 7991 28 0 0 chr15 42602076 42603051 -58777470 - L1P LINE L1 -2572 3574 2600 4973 16 7 0 chr15 42603051 42603625 -58776896 + L1PA2 LINE L1 5578 6155 0 226 364 155 35 chr15 42604076 42604450 -58776071 + L2 LINE L2 2340 2758 -556 183 220 0 0 chr15 42604623 42604673 -58775848 + GA-rich Low_complexity Low_complexity 2 51 0 18648 29 0 0 chr15 42606849 42609095 -58771426 + L1P LINE L1 3158 5403 -743 23 54 0 0 chr15 42609639 42609676 -58770845 + AT_rich Low_complexity Low_complexity 1 37 0 182 37 37 0 chr15 42609957 42609984 -58770537 + (TC)n Simple_repeat Simple_repeat 1 28 0 362 275 80 29 chr15 42610029 42610167 -58770354 - L3b LINE CR1 -192 1391 1247 1652 300 55 27 chr15 42610617 42611728 -58768793 + L1ME2 LINE L1 45 1058 -4920 1163 310 28 15 chr15 42611734 42612263 -58768258 + L1ME2 LINE L1 4463 4998 -1082 1982 250 102 33 chr15 42612278 42613190 -58767331 + L1ME2 LINE L1 5118 6098 0 253 311 0 0 chr15 42613255 42613329 -58767192 + L1MC4 LINE L1 7928 8001 -41 2181 89 45 0 chr15 42613394 42613685 -58766836 + AluSq SINE Alu 1 304 -9 40325 74 5 2 chr15 42613887 42620024 -58760497 + L1PA5 LINE L1 2 6153 -1 1563 251 117 21 chr15 42620008 42620703 -58759818 + L1ME1 LINE L1 5316 6136 -30 * 1364 165 37 0 chr15 42621385 42621657 -58758864 - L1MA8 LINE L1 -5 6286 6005 190 0 67 0 chr15 42621995 42622025 -58758496 + (TGGGGG)n Simple_repeat Simple_repeat 5 36 0 35 24 0 0 chr15 42623033 42623075 -58757446 + AT_rich Low_complexity Low_complexity 1 42 0 298 297 0 25 chr15 42623165 42623244 -58757277 + (CATATA)n Simple_repeat Simple_repeat 4 81 -37 1858 181 83 10 chr15 42623244 42623641 -58756880 - MSTB LTR MaLR 0 426 1 298 297 0 25 chr15 42623641 42623679 -58756842 + (CATATA)n Simple_repeat Simple_repeat 81 118 0 14464 129 29 13 chr15 42623694 42624000 -58756521 + Tigger1 DNA MER2_type 17 317 -2101 189 0 0 0 chr15 42624000 42624021 -58756500 + (TC)n Simple_repeat Simple_repeat 2 22 0 14464 129 29 13 chr15 42624021 42626078 -58754443 + Tigger1 DNA MER2_type 317 2418 0 24 32 0 0 chr15 42626394 42626425 -58754096 + AT_rich Low_complexity Low_complexity 1 31 0 2252 60 0 0 chr15 42626491 42626776 -58753745 - L1PA5 LINE L1 -4 6150 5866 32 0 0 0 chr15 42626781 42626813 -58753708 + AT_rich Low_complexity Low_complexity 1 32 0 514 260 109 82 chr15 42627058 42627362 -58753159 - L3 LINE CR1 -2 1575 1264 462 342 53 16 chr15 42627861 42628051 -58752470 + MIR SINE MIR 31 227 -35 201 132 0 0 chr15 42628535 42628573 -58751948 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 195 296 169 28 chr15 42628688 42628830 -58751691 - L2 LINE L2 -189 3083 2922 395 379 25 15 chr15 42629451 42629654 -58750867 - L2 LINE L2 -557 2757 2553 342 333 32 0 chr15 42629660 42629876 -58750645 + L1M4 LINE L1 4001 4223 -1923 354 289 70 44 chr15 42630266 42630494 -58750027 + MLT1L LTR MaLR 153 386 -229 275 299 170 51 chr15 42630541 42630936 -58749585 - L2 LINE L2 -1136 2178 1737 450 267 19 43 chr15 42632362 42632523 -58747998 + MIR3 SINE MIR 47 203 -5 5081 147 8 4 chr15 42633476 42634302 -58746219 - L1PA16 LINE L1 0 6166 5337 3105 212 24 4 chr15 42634296 42634998 -58745523 + L1PA16 LINE L1 4637 5352 -794 * 315 294 14 21 chr15 42635170 42635306 -58745215 + MIR SINE MIR 20 152 -73 198 0 0 0 chr15 42635554 42635576 -58744945 + (TA)n Simple_repeat Simple_repeat 2 23 0 233 236 0 0 chr15 42635576 42635631 -58744890 + T-rich Low_complexity Low_complexity 1 55 0 7360 18 0 1 chr15 42635650 42636507 -58744014 - L1PA3 LINE L1 -4 6151 5297 352 271 173 28 chr15 42636939 42637153 -58743368 + MIR SINE MIR 3 247 -15 1961 311 46 22 chr15 42637488 42638494 -58742027 - L1MEc LINE L1 -5349 1047 18 280 216 0 0 chr15 42638621 42638672 -58741849 - LTR33 LTR ERVL -392 129 79 227 304 0 0 chr15 42638684 42638740 -58741781 - MER81 DNA DNA -14 100 45 401 247 0 0 chr15 42638759 42638844 -58741677 - LTR33 LTR ERVL -436 85 1 1217 296 29 17 chr15 42639094 42639513 -58741008 - LTR16A LTR ERVL -5 445 22 479 249 140 9 chr15 42640201 42640514 -58740007 - MLT1J2 LTR MaLR -14 432 67 410 226 239 13 chr15 42640594 42640749 -58739772 - L1MEd LINE L1 -5928 191 2 346 217 0 0 chr15 42640823 42640883 -58739638 + L2 LINE L2 3205 3264 -8 296 274 94 0 chr15 42641787 42641893 -58738628 + MIR3 SINE MIR 87 202 -6 254 274 36 12 chr15 42643188 42643272 -58737249 - MLT1J LTR MaLR -197 314 229 235 295 0 0 chr15 42643370 42643431 -58737090 - MLT1J2 LTR MaLR -318 132 72 438 229 35 2 chr15 42646295 42646429 -58734092 - L1MD3 LINE L1 0 7995 6221 422 291 52 39 chr15 42646533 42646763 -58733758 - Charlie7 DNA MER1_type -1876 736 500 6839 70 6 1 chr15 42646763 42647692 -58732829 + L1PA7 LINE L1 5222 6154 0 422 291 52 39 chr15 42647692 42647767 -58732754 - Charlie7 DNA MER1_type -2112 500 427 428 300 58 53 chr15 42648132 42648322 -58732199 - MIR SINE MIR -60 202 12 387 200 30 115 chr15 42648862 42649067 -58731454 - MER69 DNA AcHobo -2 2524 1 21 36 0 0 chr15 42649373 42649401 -58731120 + AT_rich Low_complexity Low_complexity 1 28 0 493 245 0 0 chr15 42650370 42650468 -58730053 - Tigger7 DNA MER2_type 0 2487 2390 1302 198 0 17 chr15 42650477 42650714 -58729807 - Tigger7 DNA MER2_type -469 264 32 22 0 0 0 chr15 42651377 42651399 -58729122 + AT_rich Low_complexity Low_complexity 1 22 0 1263 249 35 51 chr15 42651693 42652184 -58728337 - Charlie7 DNA MER1_type -1282 1330 848 321 182 23 23 chr15 42652194 42652326 -58728195 + (TA)n Simple_repeat Simple_repeat 2 133 0 640 233 6 43 chr15 42652346 42652509 -58728012 - L1MD2 LINE L1 -24 6335 6179 423 275 63 22 chr15 42652520 42652739 -58727782 - Charlie7 DNA MER1_type -1793 819 592 3236 138 67 52 chr15 42652739 42653355 -58727166 + MER51A LTR ERV1 1 625 -9 525 271 103 43 chr15 42653421 42653772 -58726749 - Charlie7 DNA MER1_type -2059 553 182 1981 103 0 8 chr15 42654112 42654374 -58726147 + AluSc SINE Alu 35 294 -15 276 77 0 0 chr15 42655609 42655648 -58724873 + (TATTG)n Simple_repeat Simple_repeat 1 39 0 459 280 19 37 chr15 42655694 42655882 -58724639 - MER63A DNA MER1_type -9 201 44 781 317 125 8 chr15 42656132 42656523 -58723998 - LTR33 LTR ERVL -84 437 1 761 271 19 5 chr15 42656897 42657104 -58723417 - MER63A DNA MER1_type 0 210 1 1780 168 12 40 chr15 42657344 42657671 -58722850 + MER34B LTR ERV1 14 331 -234 28 48 0 0 chr15 42658392 42658434 -58722087 + AT_rich Low_complexity Low_complexity 1 42 0 670 311 55 13 chr15 42658550 42658788 -58721733 + MIR SINE MIR 15 262 0 28 0 0 0 chr15 42659119 42659147 -58721374 + AT_rich Low_complexity Low_complexity 1 28 0 333 297 94 0 chr15 42659159 42659297 -58721224 + HAL1b LINE L1 1191 1341 -7 473 303 70 12 chr15 42659555 42659799 -58720722 - MIR SINE MIR -2 260 3 406 205 13 13 chr15 42660934 42661012 -58719509 - L3b LINE CR1 -262 1321 1244 242 320 0 31 chr15 42662423 42662551 -58717970 + (TATATG)n Simple_repeat Simple_repeat 3 126 0 720 193 0 0 chr15 42662551 42662670 -58717851 + MER82 DNA MER2_type 1 119 -534 6939 60 8 0 chr15 42662672 42664352 -58716169 + L1PA7 LINE L1 4465 6154 0 2973 235 36 30 chr15 42664854 42665745 -58714776 - L1ME1 LINE L1 -4 6162 5267 261 0 0 0 chr15 42665855 42665884 -58714637 + (TA)n Simple_repeat Simple_repeat 2 30 0 998 201 58 33 chr15 42665884 42666158 -58714363 - L1ME1 LINE L1 -894 5252 4972 716 164 427 37 chr15 42666160 42666480 -58714041 + MER31A LTR ERV1 3 197 -346 840 163 107 46 chr15 42666480 42666676 -58713845 - MER6B DNA MER2_type -1 209 2 716 164 427 37 chr15 42666676 42666735 -58713786 + MER31A LTR ERV1 197 543 0 1580 253 75 5 chr15 42666735 42667331 -58713190 - L1ME1 LINE L1 -1171 4975 4338 971 112 42 75 chr15 42667347 42667561 -58712960 - L1MA9 LINE L1 0 6312 6106 2108 166 46 69 chr15 42667570 42668089 -58712432 - L1MA9 LINE L1 -30 6282 5776 288 111 0 0 chr15 42668117 42668162 -58712359 + (CA)n Simple_repeat Simple_repeat 2 46 0 248 147 0 0 chr15 42668164 42668198 -58712323 - Tigger1 DNA MER2_type 0 2418 2385 4011 211 86 24 chr15 42668213 42669327 -58711194 - L1 LINE L1 -1743 4403 3221 804 193 12 6 chr15 42669401 42669572 -58710949 - L1MD3 LINE L1 -2 7993 7822 353 209 0 0 chr15 42669584 42669651 -58710870 - Charlie2 DNA MER1_type -878 1984 1918 758 234 26 9 chr15 42669660 42669887 -58710634 - L1ME1 LINE L1 -1832 4314 4084 2377 209 32 18 chr15 42670007 42670696 -58709825 - L1M4 LINE L1 -388 5796 5093 979 209 114 74 chr15 42670696 42671074 -58709447 + MSTD LTR MaLR 3 395 -1 2377 209 32 18 chr15 42671074 42671252 -58709269 - L1M4 LINE L1 -1091 5093 4919 1338 229 74 26 chr15 42671252 42671873 -58708648 - L1M4 LINE L1 -2358 3788 3138 275 385 8 8 chr15 42671921 42672043 -58708478 - L2 LINE L2 -1 3271 3150 349 268 71 8 chr15 42672578 42672705 -58707816 - MIR SINE MIR 0 262 128 224 231 19 0 chr15 42672715 42672767 -58707754 + (TG)n Simple_repeat Simple_repeat 1 53 0 22 56 0 0 chr15 42673543 42673579 -58706942 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr15 42674600 42674629 -58705892 + AT_rich Low_complexity Low_complexity 1 29 0 457 345 14 5 chr15 42677561 42677770 -58702751 + LTR37B LTR ERV1 6 216 -252 408 253 77 84 chr15 42677798 42678071 -58702450 + LTR37B LTR ERV1 196 466 -2 3009 192 61 0 chr15 42678742 42678878 -58701643 - L1PBb LINE L1 -5115 1089 963 2000 107 43 7 chr15 42678878 42679177 -58701344 - AluSg SINE Alu 0 310 1 3009 192 61 0 chr15 42679177 42679660 -58700861 - L1PBb LINE L1 -5241 963 432 2821 111 35 36 chr15 42679656 42680178 -58700343 + L1PB2 LINE L1 1760 2280 -4583 * 13098 180 28 23 chr15 42680174 42681277 -58699244 + L1PB2 LINE L1 2842 3937 -2930 2216 109 0 26 chr15 42681277 42681588 -58698933 + AluSg SINE Alu 3 305 -5 13098 180 28 23 chr15 42681588 42683098 -58697423 + L1PB2 LINE L1 3937 5437 -1430 2042 111 0 0 chr15 42683098 42683400 -58697121 + AluY SINE Alu 1 302 0 13098 180 28 23 chr15 42683400 42683851 -58696670 + L1PB2 LINE L1 5437 5884 -983 405 0 0 0 chr15 42683851 42683896 -58696625 + (TAA)n Simple_repeat Simple_repeat 2 46 0 13098 180 28 23 chr15 42683896 42684827 -58695694 + L1PB2 LINE L1 5884 6861 -6 265 275 99 75 chr15 42686006 42686247 -58694274 - MIR SINE MIR -6 256 22 228 255 87 106 chr15 42686826 42686987 -58693534 - MLT1J LTR MaLR -35 476 319 456 155 0 0 chr15 42687558 42687629 -58692892 - AluJ/FLAM SINE Alu -241 71 1 2469 29 7 23 chr15 42688395 42688703 -58691818 + AluY SINE Alu 1 303 -8 281 323 47 24 chr15 42689063 42689190 -58691331 + MIR SINE MIR 117 246 -16 7130 193 30 5 chr15 42689196 42691383 -58689138 + L1PA13 LINE L1 3922 6152 -11 2934 118 59 18 chr15 42692146 42692639 -58687882 - MER75 DNA T2_type 0 514 2 212 356 25 17 chr15 42693609 42693727 -58686794 + MIR SINE MIR 22 140 -68 498 239 34 0 chr15 42693845 42693962 -58686559 + MER45A DNA AcHobo 58 178 0 534 58 0 70 chr15 42694089 42694175 -58686346 - MADE1 DNA Mariner 0 80 1 221 219 97 70 chr15 42695587 42695701 -58684820 + L2 LINE L2 3197 3313 0 2073 120 3 3 chr15 42697389 42697681 -58682840 - AluSq SINE Alu -13 300 9 993 269 41 44 chr15 42697943 42698307 -58682214 + MLT1H1 LTR MaLR 1 363 -192 2451 73 0 0 chr15 42698631 42698933 -58681588 - AluY SINE Alu -9 302 1 2042 134 0 0 chr15 42700150 42700449 -58680072 + AluSx SINE Alu 13 311 -1 334 299 109 6 chr15 42700450 42700624 -58679897 + L1ME3A LINE L1 1287 1478 -4948 265 263 50 0 chr15 42700648 42700728 -58679793 - L1MA7 LINE L1 -6 6285 6202 * 11003 185 54 44 chr15 42700726 42700960 -58679561 - L1MA6 LINE L1 -152 6148 5918 2046 142 41 19 chr15 42700960 42701327 -58679194 + THE1C LTR MaLR 1 375 0 11003 185 54 44 chr15 42701327 42704581 -58675940 - L1MA6 LINE L1 -382 5918 2697 186 71 0 0 chr15 42704581 42704609 -58675912 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1670 162 4 0 chr15 42704616 42704881 -58675640 - AluSx SINE Alu -46 266 1 11003 185 54 44 chr15 42704881 42705065 -58675456 - L1MA6 LINE L1 -3608 2692 2429 541 316 41 39 chr15 42705064 42705476 -58675045 + L1ME3A LINE L1 1651 2063 -4544 * 220 183 21 0 chr15 42705536 42705629 -58674892 + (TA)n Simple_repeat Simple_repeat 1 95 0 600 278 56 44 chr15 42705642 42706121 -58674400 + L1ME3A LINE L1 2098 2582 -4025 372 256 23 23 chr15 42706130 42706259 -58674262 + L1ME2 LINE L1 39 167 -6229 621 299 10 0 chr15 42706291 42706495 -58674026 + L1ME2 LINE L1 4184 4389 -1826 9268 224 38 19 chr15 42706499 42710419 -58670102 + L1M1 LINE L1 7 4749 -2816 460 255 174 11 chr15 42710386 42710862 -58669659 + L1ME2 LINE L1 6325 6886 -697 * 386 38 0 19 chr15 42710866 42710919 -58669602 + (TA)n Simple_repeat Simple_repeat 1 52 0 238 125 25 0 chr15 42710939 42710979 -58669542 - L1ME LINE L1 -387 5779 5739 613 270 133 42 chr15 42710984 42711247 -58669274 + L1ME2 LINE L1 5939 6225 -8 772 324 98 19 chr15 42711410 42712189 -58668332 + L1ME3A LINE L1 4836 5675 -751 731 252 20 28 chr15 42712207 42712457 -58668064 + L1ME3A LINE L1 5736 5983 -467 298 270 11 0 chr15 42712531 42712620 -58667901 + L1ME3A LINE L1 6356 6445 -5 1524 175 7 21 chr15 42713048 42713334 -58667187 - MLT1B LTR MaLR -108 282 1 313 311 61 15 chr15 42713845 42713977 -58666544 + MLT1L LTR MaLR 476 613 -2 317 310 36 84 chr15 42715285 42715594 -58664927 - LTR16A LTR ERVL -126 324 18 2048 337 59 38 chr15 42715746 42716314 -58664207 - MERVL LTR ERVL -444 5320 4765 2095 107 0 10 chr15 42716314 42716614 -58663907 + AluY SINE Alu 1 297 -14 2048 337 59 38 chr15 42716614 42717867 -58662654 - MERVL LTR ERVL -999 4765 3437 423 369 19 0 chr15 42717950 42718155 -58662366 - MERVL LTR ERVL -2205 3280 3100 2550 223 114 27 chr15 42719135 42719980 -58660541 - L1ME1 LINE L1 -8 6158 5230 3972 207 14 3 chr15 42719985 42720866 -58659655 + L1ME1 LINE L1 4355 5244 -902 200 254 18 0 chr15 42720866 42720921 -58659600 + (TA)n Simple_repeat Simple_repeat 2 57 0 5491 97 1 4 chr15 42720923 42721699 -58658822 + L1PB1 LINE L1 5378 6151 0 3815 261 73 48 chr15 42721708 42723588 -58656933 - L1ME1 LINE L1 -902 5244 3318 4977 184 34 41 chr15 42723792 42725170 -58655351 - L1MC1 LINE L1 -5 7123 5759 43454 41 5 3 chr15 42725203 42731346 -58649175 - L1PA4 LINE L1 0 6155 2 3648 230 51 30 chr15 42731356 42732549 -58647972 - L1MC1 LINE L1 -1199 5742 4525 2111 284 63 20 chr15 42732563 42733742 -58646779 - L1M3de LINE L1 -5461 1192 23 * 6098 185 57 46 chr15 42733739 42734315 -58646206 - L1MC1 LINE L1 -4941 2000 1431 405 0 0 0 chr15 42734315 42734360 -58646161 + (TG)n Simple_repeat Simple_repeat 2 46 0 6098 185 57 46 chr15 42734360 42735252 -58645269 - L1MC1 LINE L1 -5510 1431 517 1223 211 75 14 chr15 42735234 42735594 -58644927 - L1MCc LINE L1 -3104 3837 3456 * 1595 254 99 52 chr15 42735595 42737775 -58642746 - L1MCc LINE L1 -3584 3357 921 240 245 47 47 chr15 42738089 42738195 -58642326 - L1MC1 LINE L1 -6104 319 214 2080 90 18 0 chr15 42739551 42739854 -58640667 - AluSp SINE Alu 0 308 1 228 278 62 31 chr15 42740368 42740465 -58640056 + MIR SINE MIR 161 260 -2 2538 54 0 0 chr15 42740767 42741062 -58639459 - AluY SINE Alu -8 303 9 257 175 123 0 chr15 42741072 42741129 -58639392 + MER69 DNA AcHobo 2463 2526 0 213 291 325 0 chr15 42741147 42741264 -58639257 - MER5A DNA MER1_type -8 181 27 344 352 0 0 chr15 42741761 42741869 -58638652 - MIR3 SINE MIR -32 176 69 195 333 71 71 chr15 42743028 42743196 -58637325 + MIR3 SINE MIR 14 181 -27 1833 215 39 60 chr15 42743213 42743786 -58636735 - L1MC4 LINE L1 0 8042 7481 2429 130 8 16 chr15 42743786 42744164 -58636357 - THE1C LTR MaLR 0 375 1 1833 215 39 60 chr15 42744164 42744186 -58636335 - L1MC4 LINE L1 -561 7481 7460 327 287 74 9 chr15 42744459 42744567 -58635954 + LTR16B LTR ERVL 350 464 0 556 219 0 0 chr15 42746702 42746816 -58633705 + MER96B DNA MER1_type? 294 407 -10 258 250 0 0 chr15 42747054 42747110 -58633411 + (CA)n Simple_repeat Simple_repeat 2 57 0 20636 159 39 20 chr15 42747563 42750333 -58630188 - L1MA2 LINE L1 0 7723 5008 1866 156 117 25 chr15 42750333 42750725 -58629796 - MSTA LTR MaLR 0 428 1 20636 159 39 20 chr15 42750725 42751419 -58629102 - L1MA2 LINE L1 -2715 5008 4329 1327 48 0 0 chr15 42751419 42751580 -58628941 + L1PA4 LINE L1 5989 6154 -1 20636 159 39 20 chr15 42751580 42755711 -58624810 - L1MA2 LINE L1 -3394 4329 1 1395 186 64 7 chr15 42757197 42757493 -58623028 - L1MA5 LINE L1 -24 6276 5964 378 289 37 84 chr15 42759213 42759403 -58621118 + MER102a DNA MER1_type 135 315 -15 2412 85 0 3 chr15 42760916 42761221 -58619300 + AluSg SINE Alu 1 304 -6 364 140 9 47 chr15 42763087 42763194 -58617327 + GA-rich Low_complexity Low_complexity 2 104 0 807 133 0 0 chr15 42764323 42764436 -58616085 + AluSq/x SINE Alu 1 113 -200 425 105 0 0 chr15 42764436 42764522 -58615999 + Alu SINE Alu 227 312 0 180 235 71 102 chr15 42764753 42764851 -58615670 + L2 LINE L2 407 501 -2813 323 344 48 8 chr15 42764954 42765079 -58615442 + MIR SINE MIR 35 164 -98 790 253 0 0 chr15 42765897 42766059 -58614462 - MER58A DNA MER1_type -24 200 39 3431 211 31 37 chr15 42766061 42766892 -58613629 + L1MD2 LINE L1 5523 6348 -11 338 294 49 0 chr15 42768185 42768287 -58612234 - MLT1K LTR MaLR -113 475 369 1682 131 36 0 chr15 42768500 42768752 -58611769 - AluSx SINE Alu -13 299 39 348 345 73 12 chr15 42768755 42768920 -58611601 - MIR SINE MIR -70 192 18 1700 273 85 22 chr15 42769148 42769981 -58610540 + L1ME1 LINE L1 5254 6161 -5 725 274 0 52 chr15 42770072 42770284 -58610237 - MER63A DNA MER1_type -9 201 1 347 246 70 81 chr15 42770479 42770679 -58609842 + MIR3 SINE MIR 13 206 -43 388 325 82 53 chr15 42771468 42771809 -58608712 + L3 LINE CR1 809 1159 -418 576 284 18 0 chr15 42773004 42773173 -58607348 + HAL1 LINE L1 1590 1761 -746 314 272 24 48 chr15 42773296 42773421 -58607100 + MER119 DNA MER1_type 462 583 0 706 258 59 56 chr15 42773433 42773825 -58606696 + HAL1 LINE L1 1766 2158 -349 1491 66 0 10 chr15 42773844 42774040 -58606481 + L1P3 LINE L1 5576 5769 -385 1311 148 30 4 chr15 42774035 42774265 -58606256 - L1MA4A LINE L1 -101 6202 5967 * 1421 176 20 9 chr15 42774265 42774655 -58605866 - LOR1a LTR ERV1 0 497 37 1011 160 48 5 chr15 42774671 42774858 -58605663 - L1MA4A LINE L1 -333 5970 5776 281 169 12 85 chr15 42774889 42774984 -58605537 - L1P5 LINE L1 -361 5795 5709 594 48 48 0 chr15 42774984 42775067 -58605454 + L1PA7 LINE L1 6066 6152 -2 195 42 0 0 chr15 42775117 42775141 -58605380 + (TG)n Simple_repeat Simple_repeat 2 25 0 252 281 134 18 chr15 42775143 42775307 -58605214 + HAL1 LINE L1 2239 2421 -86 31 44 0 0 chr15 42775385 42775430 -58605091 + AT_rich Low_complexity Low_complexity 1 45 0 8465 203 110 36 chr15 42775467 42777886 -58602635 - L1M2 LINE L1 -4261 2948 7 1005 261 146 23 chr15 42777918 42777987 -58602534 - L1MDb LINE L1 -4721 1685 1626 2107 177 53 7 chr15 42777987 42778400 -58602121 - MSTB1 LTR MaLR 0 432 1 1005 261 146 23 chr15 42778400 42779189 -58601332 - L1MDb LINE L1 -4780 1626 776 303 49 0 0 chr15 42779505 42779546 -58600975 + (CA)n Simple_repeat Simple_repeat 2 42 0 282 184 147 18 chr15 42781302 42781411 -58599110 - MIR SINE MIR -95 167 45 415 300 198 26 chr15 42781416 42781719 -58598802 + L2 LINE L2 1803 2157 -1157 366 319 87 22 chr15 42781873 42782058 -58598463 - L2 LINE L2 0 3313 3117 5463 114 51 6 chr15 42782328 42784035 -58596486 - L1PA14 LINE L1 -3 6158 4397 1367 200 0 0 chr15 42784197 42784427 -58596094 + AluJb SINE Alu 1 230 -82 248 323 118 63 chr15 42785866 42786120 -58594401 - L2 LINE L2 0 3272 3005 377 212 44 18 chr15 42786407 42786520 -58594001 - MIR3 SINE MIR -9 199 84 4850 162 16 15 chr15 42787097 42787955 -58592566 + MER6 DNA MER2_type 4 862 -3 360 0 0 0 chr15 42787957 42787997 -58592524 + (TG)n Simple_repeat Simple_repeat 1 40 0 22 0 0 0 chr15 42788759 42788781 -58591740 + AT_rich Low_complexity Low_complexity 1 22 0 1768 70 4 45 chr15 42788896 42789139 -58591382 - AluY SINE Alu -14 297 65 1676 177 159 5 chr15 42789161 42789533 -58590988 + MSTB1 LTR MaLR 4 432 0 324 0 0 0 chr15 42790352 42790388 -58590133 + (TG)n Simple_repeat Simple_repeat 2 37 0 345 82 0 0 chr15 42790427 42790476 -58590045 + (CACTA)n Simple_repeat Simple_repeat 2 50 0 2302 156 60 1 chr15 42790563 42791048 -58589473 - MER44D DNA MER2_type 0 605 9 1263 312 113 9 chr15 42792032 42792590 -58587931 + MLT2F LTR ERVL 48 663 0 185 276 92 13 chr15 42792769 42792845 -58587676 + MER5A DNA MER1_type 31 112 -77 213 312 26 26 chr15 42793815 42793892 -58586629 - L2 LINE L2 0 3313 3237 982 304 78 35 chr15 42794258 42794745 -58585776 + LTR33 LTR ERVL 12 519 -2 470 260 97 51 chr15 42794749 42794945 -58585576 - MIR SINE MIR -10 252 48 235 316 35 105 chr15 42797228 42797456 -58583065 + L1MEd LINE L1 447 658 -5461 2887 3 0 0 chr15 42797623 42797934 -58582587 + AluYa5 SINE Alu 1 311 0 289 267 48 79 chr15 42798000 42798165 -58582356 + L1MDa LINE L1 303 462 -5910 2547 261 94 60 chr15 42798488 42799509 -58581012 - L1MCc LINE L1 -2159 4782 3797 2126 103 3 7 chr15 42799509 42799801 -58580720 - AluSc SINE Alu -18 291 1 2547 261 94 60 chr15 42799801 42801648 -58578873 - L1MCc LINE L1 -3144 3797 1852 7712 25 1 0 chr15 42801659 42803323 -58577198 - L1PA3 LINE L1 0 6155 4491 9065 63 0 6 chr15 42803323 42804479 -58576042 + L1P LINE L1 13 1161 -4985 1117 297 110 39 chr15 42804485 42805432 -58575089 - L1MCc LINE L1 -4888 1535 654 1270 305 78 4 chr15 42805531 42805990 -58574531 - L1MCc LINE L1 -5913 510 18 1459 307 19 15 chr15 42806000 42806531 -58573990 - HERV16 LTR ERVL -3725 1271 739 989 313 36 8 chr15 42806542 42806900 -58573621 - HERV16 LTR ERVL -4628 368 1 540 296 105 53 chr15 42806928 42807232 -58573289 - LTR16A LTR ERVL -50 400 81 265 248 77 2 chr15 42807291 42807407 -58573114 + L1MDa LINE L1 1400 1601 -4781 2110 133 3 0 chr15 42807669 42807971 -58572550 + AluSx SINE Alu 1 303 -9 465 303 12 19 chr15 42807994 42808156 -58572365 + HERV16 LTR ERVL 2019 2179 -2817 311 281 74 16 chr15 42808162 42808283 -58572238 + HERV16 LTR ERVL 2421 2548 -3106 1146 356 18 21 chr15 42808429 42808967 -58571554 + HERV16 LTR ERVL 2659 3232 -1924 394 310 10 0 chr15 42809062 42809162 -58571359 - HERV16 LTR ERVL -4858 138 38 382 259 122 7 chr15 42809245 42809392 -58571129 - LTR16A LTR ERVL -54 396 233 724 213 78 104 chr15 42812532 42812879 -58567642 - L1M4 LINE L1 -2064 4082 3745 366 263 125 68 chr15 42813033 42813402 -58567119 - HAL1 LINE L1 -714 1793 1404 5041 141 18 27 chr15 42813403 42815107 -58565414 + L1PA15 LINE L1 4236 5953 -212 2638 101 25 3 chr15 42815107 42815474 -58565047 + THE1C LTR MaLR 1 375 0 9333 127 35 46 chr15 42815474 42817071 -58563450 + THE1C-int LTR MaLR 1 1580 0 2559 120 11 3 chr15 42817073 42817441 -58563080 + THE1C LTR MaLR 3 373 -2 5041 141 18 27 chr15 42817441 42817652 -58562869 + L1PA15 LINE L1 5953 6146 -19 410 394 74 17 chr15 42817903 42818200 -58562321 - L2 LINE L2 -17 3255 2942 256 309 71 0 chr15 42818230 42818314 -58562207 - L2 LINE L2 -4 3309 3220 21 0 0 0 chr15 42818536 42818557 -58561964 + AT_rich Low_complexity Low_complexity 1 21 0 668 295 78 26 chr15 42818983 42819414 -58561107 - L1ME3 LINE L1 -302 5819 5406 309 253 101 31 chr15 42820094 42820351 -58560170 - L1ME3 LINE L1 -1542 4604 4330 1508 55 6 0 chr15 42820361 42820576 -58559945 - AluY SINE Alu 0 313 98 271 411 39 9 chr15 42820644 42820875 -58559646 - L2 LINE L2 -635 2679 2442 765 228 76 0 chr15 42821961 42822145 -58558376 - MER3 DNA MER1_type -9 200 3 23 0 0 0 chr15 42827141 42827164 -58553357 + AT_rich Low_complexity Low_complexity 1 23 0 519 250 23 8 chr15 42827275 42827407 -58553114 - MIR SINE MIR -42 220 87 270 302 67 13 chr15 42827994 42828143 -58552378 - L1ME LINE L1 -365 5756 5600 317 167 0 0 chr15 42828274 42828322 -58552199 + Tigger5 DNA MER2_type 1 48 -2275 281 129 257 0 chr15 42828335 42828405 -58552116 + Tigger5 DNA MER2_type 2234 2321 -2 21 0 0 0 chr15 42829204 42829225 -58551296 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr15 42829336 42829369 -58551152 + AT_rich Low_complexity Low_complexity 1 33 0 198 0 0 0 chr15 42829701 42829723 -58550798 + (A)n Simple_repeat Simple_repeat 1 22 0 434 319 40 60 chr15 42830282 42830530 -58549991 - MIR SINE MIR -13 249 7 342 250 145 40 chr15 42830785 42830909 -58549612 + MIR SINE MIR 45 181 -81 241 291 204 19 chr15 42831078 42831284 -58549237 + L2 LINE L2 1793 2036 -1278 313 408 18 18 chr15 42831543 42831815 -58548706 + L2 LINE L2 2619 2890 -424 385 319 67 26 chr15 42831927 42832197 -58548324 + L2 LINE L2 3021 3301 -12 183 80 0 0 chr15 42832198 42832223 -58548298 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 183 342 66 40 chr15 42832262 42832414 -58548107 + L2 LINE L2 2060 2215 -1099 2243 110 0 0 chr15 42832711 42833010 -58547511 - AluSc SINE Alu -10 299 1 333 82 0 0 chr15 42836511 42836560 -58543961 + (TG)n Simple_repeat Simple_repeat 2 50 0 1047 270 42 44 chr15 42836833 42837240 -58543281 + LTR16A1 LTR ERVL 52 457 0 1142 272 40 45 chr15 42837269 42837740 -58542781 + Tigger8 DNA MER2_type 72 540 -126 782 296 47 25 chr15 42838059 42838376 -58542145 + LTR16B LTR ERVL 141 464 0 323 305 62 23 chr15 42838624 42838752 -58541769 + MIR SINE MIR 81 213 -49 641 286 66 8 chr15 42839496 42839737 -58540784 + LTR16A LTR ERVL 191 445 -5 34 24 0 0 chr15 42839999 42840040 -58540481 + AT_rich Low_complexity Low_complexity 1 41 0 656 318 85 8 chr15 42841210 42841446 -58539075 - MIR SINE MIR -7 255 2 271 331 77 8 chr15 42841576 42841706 -58538815 + L2 LINE L2 3174 3312 -1 258 179 0 0 chr15 42842162 42842218 -58538303 + GA-rich Low_complexity Low_complexity 3 58 0 236 287 66 48 chr15 42842800 42842816 -58537705 + L1MDa LINE L1 1624 1638 -4902 180 0 0 0 chr15 42842816 42842836 -58537685 + (CAA)n Simple_repeat Simple_repeat 2 21 0 236 287 66 48 chr15 42842836 42843091 -58537430 + L1MDa LINE L1 1638 1900 -4640 1384 229 87 63 chr15 42843328 42843821 -58536700 - MLT1D LTR MaLR 0 505 1 1762 218 107 22 chr15 42843971 42844476 -58536045 + L1ME2 LINE L1 5560 6107 -57 26 64 0 0 chr15 42845406 42845453 -58535068 + AT_rich Low_complexity Low_complexity 1 47 0 396 0 0 0 chr15 42846791 42846835 -58533686 + (TG)n Simple_repeat Simple_repeat 2 45 0 249 314 58 35 chr15 42846923 42847009 -58533512 - L2 LINE L2 -5 3267 3180 200 309 26 59 chr15 42848688 42848840 -58531681 - L2 LINE L2 -8 3305 3159 549 175 39 0 chr15 42849679 42849782 -58530739 + U6 snRNA snRNA 1 107 0 13943 199 45 5 chr15 42849782 42853990 -58526531 + L1MA5 LINE L1 2634 7001 -1 21 0 0 0 chr15 42854579 42854600 -58525921 + AT_rich Low_complexity Low_complexity 1 21 0 304 110 73 7 chr15 42854890 42855026 -58525495 + (TA)n Simple_repeat Simple_repeat 1 145 0 580 294 87 39 chr15 42857101 42857170 -58523351 - MIR SINE MIR -10 252 188 2169 120 0 0 chr15 42857170 42857471 -58523050 - AluSg SINE Alu -9 301 1 580 294 87 39 chr15 42857471 42857632 -58522889 - MIR SINE MIR -74 188 11 215 175 12 50 chr15 42857709 42857789 -58522732 + CT-rich Low_complexity Low_complexity 1 77 0 229 200 0 43 chr15 42857813 42857883 -58522638 + (TA)n Simple_repeat Simple_repeat 1 67 0 255 227 9 18 chr15 42858427 42858537 -58521984 + CT-rich Low_complexity Low_complexity 4 112 0 21 36 0 0 chr15 42858579 42858607 -58521914 + AT_rich Low_complexity Low_complexity 1 28 0 2156 50 39 4 chr15 42859872 42860153 -58520368 - AluY SINE Alu -20 291 1 240 167 146 0 chr15 42860566 42860614 -58519907 - MLT1F1 LTR MaLR -200 367 313 334 226 30 24 chr15 42860711 42860870 -58519651 - MLT1F1 LTR MaLR -408 159 1 806 252 66 44 chr15 42861165 42861622 -58518899 + LTR56 LTR ERV1 9 437 0 353 244 47 79 chr15 42861790 42861917 -58518604 + MIR SINE MIR 21 143 -65 351 0 0 0 chr15 42862658 42862697 -58517824 + (T)n Simple_repeat Simple_repeat 1 39 0 408 342 26 35 chr15 42863398 42863626 -58516895 + Charlie2 DNA MER1_type 1 226 -2556 1221 220 70 108 chr15 42863758 42864593 -58515928 + Charlie2 DNA MER1_type 1975 2777 -85 460 354 34 5 chr15 42865586 42865792 -58514729 - LTR16A LTR ERVL -120 330 119 378 272 26 77 chr15 42865948 42866143 -58514378 - L2 LINE L2 -22 3291 3107 194 128 26 0 chr15 42867290 42867329 -58513192 + GA-rich Low_complexity Low_complexity 2 41 0 1875 160 3 6 chr15 42867797 42868109 -58512412 - AluY SINE Alu 0 311 1 3315 141 21 9 chr15 42868247 42868807 -58511714 - L1PB4 LINE L1 -3 6153 5587 780 286 107 72 chr15 42869152 42869191 -58511330 + L1ME3A LINE L1 3276 3312 -2834 2565 88 95 5 chr15 42869191 42869602 -58510919 + LTR7 LTR ERV1 1 448 -2 780 286 107 72 chr15 42869602 42869960 -58510561 + L1ME3A LINE L1 3312 3656 -2490 3060 136 35 35 chr15 42869960 42870555 -58509966 + LTR49 LTR ERV1 1 595 0 780 286 107 72 chr15 42870555 42871050 -58509471 + L1ME3A LINE L1 3656 4218 -1928 3923 95 0 28 chr15 42871050 42871616 -58508905 + MER41A LTR ERV1 5 554 0 780 286 107 72 chr15 42871616 42871824 -58508697 + L1ME3A LINE L1 4218 4417 -1729 643 259 175 14 chr15 42871819 42872105 -58508416 + L1ME3A LINE L1 5553 5884 -286 * 3735 150 65 12 chr15 42872107 42872162 -58508359 + MER50 LTR ERV1 1 52 -682 234 105 0 0 chr15 42872162 42872200 -58508321 + (CA)n Simple_repeat Simple_repeat 2 39 0 3735 150 65 12 chr15 42872200 42872819 -58507702 + MER50 LTR ERV1 52 711 -23 488 231 70 13 chr15 42872878 42873034 -58507487 + L1ME3A LINE L1 6001 6165 -5 380 253 100 20 chr15 42873154 42873304 -58507217 + L1ME3A LINE L1 4602 4763 -1383 1247 199 4 0 chr15 42873322 42873548 -58506973 - AluJb SINE Alu -16 296 70 183 100 0 0 chr15 42873576 42873606 -58506915 + (AATAG)n Simple_repeat Simple_repeat 1 30 0 1565 277 74 29 chr15 42873697 42874634 -58505887 + L1ME3A LINE L1 4973 5948 -222 237 65 0 0 chr15 42876119 42876150 -58504371 + (T)n Simple_repeat Simple_repeat 1 31 0 649 215 98 29 chr15 42876926 42877172 -58503349 + L1MB7 LINE L1 4301 4563 -1583 907 242 85 30 chr15 42877172 42877608 -58502913 - MLT1D LTR MaLR 0 467 12 3211 204 64 15 chr15 42877619 42878996 -58501525 + L1MB7 LINE L1 4563 6000 -184 349 221 189 0 chr15 42878997 42879092 -58501429 - MLT1D LTR MaLR -76 429 317 611 153 5 54 chr15 42879095 42879232 -58501289 + L1MB7 LINE L1 6014 6146 -32 1069 257 89 24 chr15 42879566 42879730 -58500791 + MLT1A2 LTR MaLR 4 156 -218 432 0 0 0 chr15 42879730 42879778 -58500743 + (TG)n Simple_repeat Simple_repeat 2 49 0 1069 257 89 24 chr15 42879778 42879951 -58500570 + MLT1A2 LTR MaLR 156 363 -11 461 298 37 52 chr15 42880883 42881091 -58499430 + MIR SINE MIR 40 243 -19 198 270 27 32 chr15 42881784 42881918 -58498603 - MER5A DNA MER1_type -6 183 1 22 35 0 0 chr15 42883005 42883034 -58497487 + AT_rich Low_complexity Low_complexity 1 29 0 404 322 7 0 chr15 42883146 42883295 -58497226 + CT-rich Low_complexity Low_complexity 4 153 0 203 304 54 0 chr15 42883807 42883863 -58496658 + MIR3 SINE MIR 140 198 -10 1482 214 54 5 chr15 42884031 42884400 -58496121 - MER110A LTR ERV1 -2 466 80 236 303 26 0 chr15 42886680 42886756 -58493765 - MIR3 SINE MIR -6 202 125 261 256 23 124 chr15 42887172 42887301 -58493220 + MER5A DNA MER1_type 73 188 -1 2384 246 70 30 chr15 42887882 42888725 -58491796 - L1ME1 LINE L1 -5 6161 5285 21 0 0 0 chr15 42889555 42889576 -58490945 + AT_rich Low_complexity Low_complexity 1 21 0 305 254 146 58 chr15 42889614 42889819 -58490702 + L1ME4a LINE L1 5803 6025 -96 1906 193 39 28 chr15 42889832 42890266 -58490255 - L1MD1 LINE L1 0 6242 5812 21 36 0 0 chr15 42890414 42890442 -58490079 + AT_rich Low_complexity Low_complexity 1 28 0 2077 159 69 15 chr15 42892545 42892953 -58487568 + MSTB1 LTR MaLR 3 432 0 344 232 32 21 chr15 42893014 42893109 -58487412 - MLT1L LTR MaLR -12 603 508 2056 103 24 14 chr15 42893559 42893850 -58486671 + AluY SINE Alu 1 294 -17 2160 165 44 0 chr15 42894529 42894941 -58485580 + L1MD1 LINE L1 5367 5796 -446 1217 180 54 7 chr15 42894942 42895235 -58485286 + MLT1A1 LTR MaLR 1 365 0 2009 184 27 18 chr15 42895235 42895675 -58484846 + L1MD1 LINE L1 5793 6236 -6 21 0 0 0 chr15 42896339 42896360 -58484161 + AT_rich Low_complexity Low_complexity 1 21 0 625 280 27 31 chr15 42896369 42896626 -58483895 - L1ME3A LINE L1 -11 6159 5904 198 374 50 31 chr15 42897078 42897300 -58483221 + L2 LINE L2 2836 3061 -211 227 311 33 74 chr15 42897921 42898043 -58482478 + MIR SINE MIR 118 234 -28 367 321 50 7 chr15 42898684 42898824 -58481697 - L2 LINE L2 0 3313 3168 441 201 141 53 chr15 42899112 42899251 -58481270 - MLT1E1 LTR MaLR 0 565 330 485 213 57 41 chr15 42899310 42899500 -58481021 - MLT1E1 LTR MaLR -396 258 11 368 337 10 0 chr15 42899605 42899706 -58480815 + MIR SINE MIR 13 114 -148 2323 80 10 0 chr15 42899846 42900147 -58480374 - AluY SINE Alu -7 304 1 25 0 0 0 chr15 42901147 42901172 -58479349 + AT_rich Low_complexity Low_complexity 1 25 0 290 296 102 51 chr15 42901959 42902155 -58478366 + MIR3 SINE MIR 2 207 -1 297 343 119 34 chr15 42902318 42902645 -58477876 + L2 LINE L2 2929 3283 -30 243 0 0 0 chr15 42902663 42902690 -58477831 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 1366 151 81 13 chr15 42902987 42903266 -58477255 - MLT1D LTR MaLR -1 504 221 280 158 24 134 chr15 42903278 42903360 -58477161 - MLT1D LTR MaLR -430 75 3 247 331 166 0 chr15 42903531 42903694 -58476827 - MIR SINE MIR -60 202 13 615 288 56 4 chr15 42904326 42904576 -58475945 - LTR37B LTR ERV1 0 468 206 452 138 277 46 chr15 42904640 42904770 -58475751 - MER20 DNA MER1_type -4 215 56 423 212 102 66 chr15 42904772 42904909 -58475612 + FLAM_A SINE Alu 1 142 0 949 168 37 94 chr15 42905343 42905587 -58474934 - L1PA16 LINE L1 -9 6157 5928 * 1278 129 41 153 chr15 42905584 42905925 -58474596 + L1P LINE L1 3644 3946 -2200 927 266 79 13 chr15 42906157 42906473 -58474048 - MER46C DNA MER2_type 0 338 2 386 291 141 10 chr15 42906490 42906696 -58473825 - MIR SINE MIR 0 262 30 563 224 43 6 chr15 42907455 42907616 -58472905 - L1M4 LINE L1 -3832 2314 2148 * 634 175 138 78 chr15 42907613 42907830 -58472691 - L1MB7 LINE L1 0 6682 6453 2228 221 68 10 chr15 42907833 42908923 -58471598 - L1MB7 LINE L1 -329 6353 5203 572 242 26 9 chr15 42908923 42909158 -58471363 - 7SK RNA RNA 0 193 1 1126 219 33 25 chr15 42909158 42909523 -58470998 - L1MB7 LINE L1 -1426 5218 4851 2014 277 85 24 chr15 42909536 42911411 -58469110 - L1MB7 LINE L1 -3650 2994 886 * 4387 215 26 43 chr15 42911405 42912980 -58467541 - L1MD1 LINE L1 -68 6672 5131 1173 266 66 23 chr15 42913021 42913583 -58466938 - L1MD1 LINE L1 -5057 1577 893 328 206 68 14 chr15 42913661 42913734 -58466787 - L1MD1 LINE L1 -5671 871 795 318 364 36 27 chr15 42914103 42914323 -58466198 - L1MD1 LINE L1 -6304 238 17 2070 233 43 9 chr15 42914418 42914951 -58465570 - L1MB7 LINE L1 -16 6168 5618 478 328 20 10 chr15 42914952 42915156 -58465365 - L1MEc LINE L1 -5789 607 402 1493 223 17 3 chr15 42915190 42915536 -58464985 + MER6 DNA MER2_type 505 855 -10 3590 266 57 26 chr15 42915547 42918689 -58461832 - L1 LINE L1 -3693 2657 4 410 268 73 65 chr15 42920464 42920710 -58459811 - HERVL68 LTR ERVL -329 2708 2461 259 296 115 12 chr15 42921433 42921676 -58458845 + L1ME4a LINE L1 5668 5935 -186 34 65 0 0 chr15 42921795 42921857 -58458664 + AT_rich Low_complexity Low_complexity 1 62 0 2093 136 0 0 chr15 42922558 42922860 -58457661 - AluSq SINE Alu -11 302 1 274 238 16 0 chr15 42923941 42924004 -58456517 - MLT1K LTR MaLR -14 574 511 204 340 123 0 chr15 42924491 42924597 -58455924 - MIR3 SINE MIR -76 132 14 684 296 57 31 chr15 42924829 42925180 -58455341 + LTR16B LTR ERVL 105 464 0 668 324 84 17 chr15 42927740 42928277 -58452244 + HAL1b LINE L1 271 843 -505 5907 102 11 16 chr15 42928545 42929564 -58450957 + L1P3 LINE L1 923 1923 -4538 2553 61 302 16 chr15 42929733 42930173 -58450348 - L1P LINE L1 -5088 1058 493 * 7528 32 0 0 chr15 42930158 42931075 -58449446 + L1P LINE L1 1539 2455 -3691 10663 111 13 1 chr15 42931219 42932871 -58447650 + L1P3 LINE L1 1913 3584 -2877 782 74 0 0 chr15 42932868 42932976 -58447545 - L1P LINE L1 -4780 1366 1259 * 14623 96 4 4 chr15 42933076 42935239 -58445282 + L1PA2 LINE L1 2548 4711 -1435 7311 23 1 0 chr15 42935344 42936493 -58444028 + L1PA2 LINE L1 4997 6152 -3 2705 98 2 2 chr15 42936508 42936905 -58443616 + L1P3 LINE L1 3567 3963 -2498 4453 64 24 0 chr15 42936905 42937476 -58443045 + L1PA7 LINE L1 5556 6148 -6 371 305 106 16 chr15 42937490 42937932 -58442589 - L1ME4a LINE L1 -294 5827 5332 1531 233 65 27 chr15 42938159 42938605 -58441916 - L1MCa LINE L1 -5959 467 5 1718 185 82 23 chr15 42939625 42939663 -58440858 - MLT2B1 LTR ERVL -5 515 481 309 51 0 0 chr15 42939663 42939702 -58440819 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1718 185 82 23 chr15 42939702 42940102 -58440419 - MLT2B1 LTR ERVL -39 481 1 283 335 28 51 chr15 42940383 42940559 -58439962 - L2 LINE L2 -210 3062 2891 238 284 15 0 chr15 42940630 42940697 -58439824 - L2 LINE L2 -1020 2294 2227 481 248 43 98 chr15 42940794 42941028 -58439493 + MER102a DNA MER1_type 78 298 -32 23 33 0 0 chr15 42941360 42941390 -58439131 + AT_rich Low_complexity Low_complexity 1 30 0 772 201 17 11 chr15 42941629 42941803 -58438718 - L1MC3 LINE L1 -8 7777 7603 21 36 0 0 chr15 42941803 42941831 -58438690 + AT_rich Low_complexity Low_complexity 1 28 0 1834 114 70 84 chr15 42941954 42942323 -58438198 - THE1B LTR MaLR 0 364 1 9334 118 14 18 chr15 42942323 42943934 -58436587 - THE1B-int LTR MaLR 0 1651 87 244 155 113 0 chr15 42944390 42944461 -58436060 - L1MCc LINE L1 -3900 3043 2965 340 221 158 11 chr15 42944482 42944577 -58435944 - L1MCc LINE L1 -4022 2919 2811 435 19 0 0 chr15 42946436 42946488 -58434033 + (CA)n Simple_repeat Simple_repeat 1 52 0 186 43 0 0 chr15 42946487 42946510 -58434011 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 203 241 155 0 chr15 42947175 42947233 -58433288 + MIR SINE MIR 75 141 -121 315 312 65 40 chr15 42947453 42947652 -58432869 - MIR SINE MIR -9 253 50 1845 90 0 12 chr15 42949361 42949616 -58430905 - PABL_B LTR ERV1 -2 665 414 580 239 79 74 chr15 42949741 42950327 -58430194 - L1MCc LINE L1 -5048 1893 1317 328 384 67 27 chr15 42950863 42951194 -58429327 - L1MCc LINE L1 -6191 750 407 275 245 43 0 chr15 42951827 42951921 -58428600 + (TA)n Simple_repeat Simple_repeat 2 99 0 2012 107 0 28 chr15 42951998 42952314 -58428207 - AluSg SINE Alu 0 308 1 516 250 66 31 chr15 42953045 42953241 -58427280 + MLT1C LTR MaLR 112 314 -153 5729 216 72 23 chr15 42953356 42956836 -58423685 + L1 LINE L1 312 3971 -2357 5230 188 41 15 chr15 42957717 42958214 -58422307 - L1MA4 LINE L1 -6 6294 5811 2491 77 0 0 chr15 42958214 42958525 -58421996 - AluY SINE Alu 0 311 1 5230 188 41 15 chr15 42958525 42960297 -58420224 - L1MA4 LINE L1 -489 5811 3972 1147 250 52 43 chr15 42960515 42960597 -58419924 + L1MDa LINE L1 1565 1645 -4895 2297 161 14 48 chr15 42960597 42961038 -58419483 + MSTB LTR MaLR 1 426 0 1147 250 52 43 chr15 42961038 42961515 -58419006 + L1MDa LINE L1 1645 2129 -4411 358 89 0 36 chr15 42961549 42961605 -58418916 + MADE1 DNA Mariner 3 56 -24 388 235 55 84 chr15 42961627 42961865 -58418656 + L1MDa LINE L1 2334 2564 -3976 327 282 40 101 chr15 42961865 42962241 -58418280 - L1MCc LINE L1 -6047 376 24 26 30 0 0 chr15 42962314 42962347 -58418174 + AT_rich Low_complexity Low_complexity 1 33 0 1416 171 146 36 chr15 42962489 42962845 -58417676 + LTR52 LTR ERVL 1 395 -26 522 338 112 33 chr15 42963120 42963603 -58416918 - LTR33 LTR ERVL 0 521 1 26 0 0 0 chr15 42964100 42964126 -58416395 + AT_rich Low_complexity Low_complexity 1 26 0 719 179 7 0 chr15 42965254 42965394 -58415127 - L1MA4 LINE L1 -2122 4024 3884 1985 226 46 20 chr15 42965521 42966060 -58414461 - L1P LINE L1 -2130 4016 3464 4251 196 20 14 chr15 42966075 42967028 -58413493 + L1 LINE L1 4207 5165 -1163 3878 170 29 22 chr15 42967139 42968180 -58412341 + L1PA16 LINE L1 4975 6017 -149 329 339 0 39 chr15 42968267 42968394 -58412127 + MER5A DNA MER1_type 44 165 -24 26 30 0 0 chr15 42968599 42968632 -58411889 + AT_rich Low_complexity Low_complexity 1 33 0 952 220 6 0 chr15 42968768 42968945 -58411576 - MER45A DNA AcHobo 0 178 1 34 19 0 19 chr15 42969495 42969528 -58410993 + AT_rich Low_complexity Low_complexity 1 34 -17 2062 113 0 3 chr15 42969528 42969812 -58410709 - AluSg SINE Alu -27 283 1 34 19 0 19 chr15 42969812 42969830 -58410691 + AT_rich Low_complexity Low_complexity 34 51 0 236 221 156 0 chr15 42970512 42970589 -58409932 + MIR SINE MIR 122 210 -52 545 246 129 12 chr15 42970730 42971072 -58409449 - L1MDb LINE L1 -2718 4239 3858 449 259 101 50 chr15 42971067 42971763 -58408758 - L1MDb LINE L1 -4916 2043 1206 * 375 60 0 0 chr15 42972767 42972817 -58407704 + (TG)n Simple_repeat Simple_repeat 2 51 0 369 109 0 0 chr15 42973748 42973803 -58406718 + (CA)n Simple_repeat Simple_repeat 1 55 0 342 315 11 0 chr15 42973945 42974037 -58406484 + MIR SINE MIR 30 122 -140 333 296 127 26 chr15 42974157 42974346 -58406175 + LTR16C LTR ERVL 277 484 -7 857 320 42 46 chr15 42974348 42975022 -58405499 - ERVL LTR ERVL -3211 2482 1761 216 0 0 0 chr15 42975368 42975392 -58405129 + (T)n Simple_repeat Simple_repeat 1 24 0 2165 101 7 10 chr15 42975822 42976130 -58404391 + AluY SINE Alu 3 309 -2 826 198 31 47 chr15 42977321 42977513 -58403008 - MER5A DNA MER1_type 0 189 1 22 0 0 0 chr15 42979362 42979384 -58401137 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr15 42980754 42980791 -58399730 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr15 42981502 42981532 -58398989 + AT_rich Low_complexity Low_complexity 1 30 0 335 246 52 22 chr15 42981640 42981774 -58398747 + L1MEd LINE L1 963 1100 -5019 400 304 106 14 chr15 42981812 42982029 -58398492 + L1MEd LINE L1 1180 1416 -4894 343 299 84 37 chr15 42982241 42982455 -58398066 - L1ME2 LINE L1 -224 5940 5717 3819 105 19 8 chr15 42982485 42983075 -58397446 + L1MA1 LINE L1 5707 6302 0 23 92 0 0 chr15 42983075 42983140 -58397381 + AT_rich Low_complexity Low_complexity 1 65 0 316 336 129 13 chr15 42983155 42983536 -58396985 - L1ME2 LINE L1 -1542 4604 4180 245 318 40 11 chr15 42983667 42983843 -58396678 - L1ME2 LINE L1 -2153 3993 3813 595 292 142 59 chr15 42983860 42985037 -58395484 - L1ME2 LINE L1 -2381 3765 2430 267 289 106 19 chr15 42985770 42985874 -58394647 + L2 LINE L2 3197 3309 -4 607 70 0 20 chr15 42986681 42986781 -58393740 + (CATA)n Simple_repeat Simple_repeat 2 99 0 667 203 0 0 chr15 42987831 42987949 -58392572 + FLAM_C SINE Alu 1 118 -15 22 56 0 0 chr15 42987949 42987985 -58392536 + AT_rich Low_complexity Low_complexity 1 36 0 201 139 0 0 chr15 42989238 42989281 -58391240 + (GA)n Simple_repeat Simple_repeat 2 44 0 13102 75 15 4 chr15 42990921 42993161 -58387360 + L1P1 LINE L1 3519 5782 -373 3630 136 2 10 chr15 42993391 42993987 -58386534 + L1PA3 LINE L1 5562 6152 -3 1717 273 95 35 chr15 42993987 42996053 -58384468 + L1MEc LINE L1 1055 3210 -3005 7158 212 63 7 chr15 42996232 42997768 -58382753 - L1M2a LINE L1 -5530 1638 16 586 219 110 0 chr15 42998137 42998292 -58382229 - LTR16C LTR ERVL 0 491 320 211 191 0 0 chr15 42998657 42998699 -58381822 + CT-rich Low_complexity Low_complexity 1 42 0 243 275 12 123 chr15 42998699 42998870 -58381651 - MIR SINE MIR -2 260 109 21 0 0 0 chr15 42998989 42999010 -58381511 + AT_rich Low_complexity Low_complexity 1 21 0 241 303 66 66 chr15 42999083 42999235 -58381286 + MIR SINE MIR 17 168 -94 185 292 21 0 chr15 43000930 43000978 -58379543 + L2 LINE L2 3218 3266 -6 22 0 0 0 chr15 43001094 43001116 -58379405 + AT_rich Low_complexity Low_complexity 1 22 0 33 73 0 0 chr15 43001551 43001619 -58378902 + AT_rich Low_complexity Low_complexity 1 68 0 22 0 0 0 chr15 43002948 43002970 -58377551 + AT_rich Low_complexity Low_complexity 1 22 0 509 253 0 11 chr15 43004709 43004804 -58375717 + MER81 DNA DNA 1 94 -20 346 340 194 9 chr15 43004859 43005091 -58375430 + L2 LINE L2 2513 2787 -527 1017 297 88 17 chr15 43005177 43005870 -58374651 - L2 LINE L2 0 3313 2562 223 317 25 67 chr15 43006041 43006161 -58374360 + L2 LINE L2 3035 3149 -123 190 200 0 22 chr15 43006232 43006277 -58374244 + L2 LINE L2 3269 3312 -1 247 238 150 0 chr15 43006381 43006461 -58374060 - L2 LINE L2 0 3313 3222 214 259 0 108 chr15 43007362 43007462 -58373059 + MIR SINE MIR 2 93 -115 296 294 77 35 chr15 43008438 43008581 -58371940 + MIR SINE MIR 66 214 -48 3982 202 40 12 chr15 43010357 43011470 -58369051 - L1MA5 LINE L1 -267 7054 5880 1634 159 83 26 chr15 43011470 43011821 -58368700 - THE1C LTR MaLR 0 375 5 3982 202 40 12 chr15 43011821 43012301 -58368220 - L1MA5 LINE L1 -1441 5880 5415 2542 205 107 12 chr15 43012284 43013529 -58366992 - L1MA5 LINE L1 -4111 3057 1653 * 5671 149 36 16 chr15 43013630 43014661 -58365860 + THE1-int LTR MaLR 435 1486 -94 238 305 150 6 chr15 43015628 43015795 -58364726 + MIR SINE MIR 40 230 -32 431 168 47 28 chr15 43016570 43016677 -58363844 - MER5A DNA MER1_type -77 112 4 2471 147 16 10 chr15 43016747 43017258 -58363263 - LTR9 LTR ERV1 0 612 1 214 290 0 0 chr15 43017258 43017320 -58363201 + L2 LINE L2 3249 3310 -3 1021 323 33 11 chr15 43018633 43019082 -58361439 + LTR16B LTR ERVL 5 463 -1 268 319 123 43 chr15 43019643 43019806 -58360715 + LTR67 LTR ERVL 2 177 -380 2270 139 79 23 chr15 43022218 43022939 -58357582 - MER4E-int LTR ERV1 -1455 5303 4452 * 3605 152 57 11 chr15 43022938 43023557 -58356964 - MER4E-int LTR ERV1 -2670 4088 3442 5373 126 109 29 chr15 43023574 43025199 -58355322 - MER4E-int LTR ERV1 -4088 2670 1444 4856 138 65 13 chr15 43025210 43026280 -58354241 - MER4E-int LTR ERV1 -5578 1180 1 5037 84 29 25 chr15 43026285 43027043 -58353478 - MER4E LTR ERV1 -5 761 1 1773 200 73 40 chr15 43027099 43027469 -58353052 - MER67D LTR ERV1 0 514 157 396 40 0 0 chr15 43027469 43027519 -58353002 + (TGAA)n Simple_repeat Simple_repeat 2 51 0 890 101 0 0 chr15 43027525 43027654 -58352867 - L1PA13 LINE L1 -7 6156 6028 1773 200 73 40 chr15 43027654 43027772 -58352749 - MER67D LTR ERV1 -361 153 3 5722 130 157 6 chr15 43029645 43030698 -58349823 - MER11B LTR ERVK -24 1212 1 1899 182 88 16 chr15 43030698 43031132 -58349389 + MER4B-int LTR ERV1 6188 6652 -106 252 0 0 0 chr15 43031725 43031753 -58348768 + (T)n Simple_repeat Simple_repeat 1 28 0 5255 85 14 13 chr15 43032036 43032801 -58347720 + MER4E LTR ERV1 1 766 0 469 274 192 0 chr15 43034871 43035017 -58345504 + MER5A DNA MER1_type 15 188 -1 682 37 0 0 chr15 43035189 43035270 -58345251 + PABL_B LTR ERV1 1 81 -586 1533 146 119 26 chr15 43035748 43036091 -58344430 + THE1C LTR MaLR 1 375 0 1082 188 22 5 chr15 43036096 43036320 -58344201 + THE1C-int LTR MaLR 6 233 -1347 418 244 94 33 chr15 43036322 43036502 -58344019 + THE1B LTR MaLR 161 351 -13 330 298 11 11 chr15 43037177 43037271 -58343250 - MER5A DNA MER1_type -95 94 1 21 89 0 0 chr15 43037787 43037843 -58342678 + AT_rich Low_complexity Low_complexity 1 56 0 26 0 0 0 chr15 43038774 43038800 -58341721 + AT_rich Low_complexity Low_complexity 1 26 0 235 274 179 11 chr15 43038813 43038908 -58341613 - MIR SINE MIR 0 262 152 * 329 287 90 45 chr15 43038889 43039112 -58341409 - MIR SINE MIR -28 234 2 252 325 24 8 chr15 43039119 43039242 -58341279 + Charlie8 DNA MER1_type 109 233 -2184 233 347 48 16 chr15 43039582 43039706 -58340815 + MIR SINE MIR 2 129 -133 22 0 0 0 chr15 43041041 43041063 -58339458 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr15 43041173 43041218 -58339303 + AT_rich Low_complexity Low_complexity 1 45 0 327 216 97 30 chr15 43042018 43042152 -58338369 - MLT1H1 LTR MaLR -60 530 388 469 264 78 56 chr15 43042154 43042385 -58338136 - MLT1H1 LTR MaLR -313 242 7 562 309 53 0 chr15 43042482 43042670 -58337851 - LTR16A LTR ERVL 0 450 253 373 209 47 0 chr15 43042789 43042875 -58337646 + THE1B LTR MaLR 304 393 -3 * 579 184 9 26 chr15 43042875 43042985 -58337536 - MLT1E2 LTR MaLR -513 113 6 491 296 128 6 chr15 43043046 43043225 -58337296 + L2 LINE L2 3113 3313 0 544 209 22 22 chr15 43043430 43043564 -58336957 - AluJo SINE Alu -178 134 1 25 0 0 0 chr15 43044380 43044405 -58336116 + AT_rich Low_complexity Low_complexity 1 25 0 632 257 32 46 chr15 43044568 43044848 -58335673 + L1M4 LINE L1 4822 5097 -1049 21 0 0 0 chr15 43045272 43045293 -58335228 + AT_rich Low_complexity Low_complexity 1 21 0 317 24 24 0 chr15 43045771 43045813 -58334708 + (CA)n Simple_repeat Simple_repeat 1 43 0 311 246 34 42 chr15 43045835 43045953 -58334568 + L1M4 LINE L1 1591 1707 -4835 701 220 73 35 chr15 43046002 43046234 -58334287 + L1M4 LINE L1 4288 4528 -2116 577 257 73 5 chr15 43046273 43046479 -58334042 + L1ME1 LINE L1 3608 3827 -2319 * 2705 251 72 18 chr15 43046471 43048361 -58332160 + L1ME1 LINE L1 4067 6151 -15 221 159 45 0 chr15 43048372 43048416 -58332105 + A-rich Low_complexity Low_complexity 6 51 0 259 246 0 0 chr15 43048808 43048865 -58331656 + MER103 DNA DNA 42 98 -68 420 329 13 13 chr15 43048977 43049132 -58331389 - MLT1J2 LTR MaLR -291 159 5 264 250 31 52 chr15 43049502 43049598 -58330923 - MIR SINE MIR -56 206 113 193 402 12 30 chr15 43050088 43050257 -58330264 - L2 LINE L2 -290 2982 2817 4767 247 58 39 chr15 43050741 43052150 -58328371 + L1M4 LINE L1 15 1395 -5251 2071 121 13 0 chr15 43052150 43052464 -58328057 + L1PA10 LINE L1 5848 6165 -3 4767 247 58 39 chr15 43052464 43053022 -58327499 + L1M4 LINE L1 1395 2031 -4615 7674 92 5 14 chr15 43053022 43054103 -58326418 - MER11C LTR ERVK 0 1071 1 4767 247 58 39 chr15 43054103 43054170 -58326351 + L1M4 LINE L1 2031 2095 -4551 1489 86 34 10 chr15 43054269 43054478 -58326043 + LTR66 LTR ERVL 1 214 -396 227 301 9 0 chr15 43054535 43054648 -58325873 + (CATATA)n Simple_repeat Simple_repeat 2 115 0 237 286 11 22 chr15 43054648 43054739 -58325782 - L1MC4 LINE L1 -1339 6703 6614 * 242 279 47 0 chr15 43054683 43054769 -58325752 + L1MC4 LINE L1 6614 6703 -1339 287 217 43 14 chr15 43054817 43054886 -58325635 + MER7A DNA MER2_type 3 73 -275 195 184 0 0 chr15 43054886 43054924 -58325597 + (TG)n Simple_repeat Simple_repeat 1 38 0 263 177 16 0 chr15 43054982 43055044 -58325477 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 2123 167 9 0 chr15 43055045 43055387 -58325134 + MER7A DNA MER2_type 3 345 -1 1900 241 64 73 chr15 43055591 43056011 -58324510 + L1M4 LINE L1 2684 3095 -3549 2261 53 3 66 chr15 43056011 43056329 -58324192 - AluY SINE Alu -13 298 1 1900 241 64 73 chr15 43056329 43056748 -58323773 + L1M4 LINE L1 3095 3516 -3128 1259 206 73 24 chr15 43056781 43057150 -58323371 - L1 LINE L1 -1547 4599 4213 1312 126 23 0 chr15 43057152 43057366 -58323155 + L1PB4 LINE L1 5931 6149 -7 6582 228 64 34 chr15 43057390 43059712 -58320809 + L1M4 LINE L1 3535 5946 -726 257 282 56 0 chr15 43059832 43059903 -58320618 + MER91C DNA MER1_type 34 108 -32 366 321 34 63 chr15 43061056 43061293 -58319228 + MIR SINE MIR 28 257 -5 623 291 65 0 chr15 43061575 43061774 -58318747 + MIR SINE MIR 10 221 -41 23 68 0 0 chr15 43061981 43062025 -58318496 + AT_rich Low_complexity Low_complexity 1 44 0 1549 227 58 142 chr15 43062211 43063217 -58317304 + L1ME1 LINE L1 4076 4996 -1150 625 254 31 36 chr15 43063224 43063463 -58317058 + L1ME1 LINE L1 5942 6163 -1 33 0 0 0 chr15 43064189 43064222 -58316299 + AT_rich Low_complexity Low_complexity 1 33 0 5496 164 20 21 chr15 43064654 43066027 -58314494 - L1P5 LINE L1 -381 5775 4398 189 0 0 0 chr15 43066027 43066048 -58314473 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 5496 164 20 21 chr15 43066048 43066295 -58314226 - L1P5 LINE L1 -1758 4398 4152 573 139 0 30 chr15 43067556 43067657 -58312864 + MER4A LTR ERV1 1 98 -566 1655 146 26 22 chr15 43067657 43067999 -58312522 + MER4A LTR ERV1 263 664 0 262 242 32 0 chr15 43068173 43068235 -58312286 + MIR SINE MIR 87 150 -112 3640 166 71 38 chr15 43068242 43069041 -58311480 - LTR1B LTR ERV1 0 826 1 408 293 54 7 chr15 43069188 43069335 -58311186 + L2 LINE L2 3160 3313 0 240 373 16 8 chr15 43069648 43069774 -58310747 - L2 LINE L2 -842 2472 2346 383 272 84 47 chr15 43069792 43070005 -58310516 - MIR SINE MIR -11 251 31 4245 197 18 6 chr15 43070530 43071437 -58309084 - L1 LINE L1 -1997 4149 3232 5627 185 21 40 chr15 43071465 43072322 -58308199 - L1MC1 LINE L1 -1 6401 5529 2254 106 0 0 chr15 43072322 43072615 -58307906 - AluSc SINE Alu -16 293 1 5627 185 21 40 chr15 43072615 43073171 -58307350 - L1MC1 LINE L1 -873 5529 5012 195 42 0 0 chr15 43073171 43073195 -58307326 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5627 185 21 40 chr15 43073195 43073485 -58307036 - L1MC1 LINE L1 -1390 5012 4718 1539 228 94 59 chr15 43073477 43073709 -58306812 - L1M4 LINE L1 -1299 4847 4624 * 1619 222 3 0 chr15 43073709 43074015 -58306506 + AluJo SINE Alu 5 311 -1 1539 228 94 59 chr15 43074015 43074476 -58306045 - L1M4 LINE L1 -1522 4624 4130 48 93 0 0 chr15 43074990 43075129 -58305392 + AT_rich Low_complexity Low_complexity 1 139 0 333 207 62 41 chr15 43075297 43075442 -58305079 - L1MC5 LINE L1 -227 7734 7587 507 234 7 26 chr15 43075633 43075787 -58304734 - L1M4 LINE L1 -3136 3010 2860 23 78 0 0 chr15 43075791 43075842 -58304679 + AT_rich Low_complexity Low_complexity 1 51 0 324 329 54 7 chr15 43075954 43076103 -58304418 - L1MC1 LINE L1 -2143 4072 3917 214 255 7 114 chr15 43076169 43076318 -58304203 - L2 LINE L2 -1235 2079 1947 2045 157 45 0 chr15 43077249 43077581 -58302940 - MER7A DNA MER2_type -1 345 1 23 54 0 0 chr15 43077855 43077892 -58302629 + AT_rich Low_complexity Low_complexity 1 37 0 443 279 7 7 chr15 43079317 43079457 -58301064 - L1MC1 LINE L1 -2216 3999 3860 * 905 272 98 88 chr15 43079449 43079663 -58300858 - L1MC1 LINE L1 -5279 1117 907 2261 97 7 3 chr15 43079663 43079973 -58300548 - AluSp SINE Alu 0 313 3 905 272 98 88 chr15 43079973 43080115 -58300406 - L1MC1 LINE L1 -5489 907 768 1864 114 7 4 chr15 43080115 43080396 -58300125 - AluSx SINE Alu -30 282 1 905 272 98 88 chr15 43080396 43081115 -58299406 - L1MC1 LINE L1 -5628 768 30 42 0 0 0 chr15 43082458 43082500 -58298021 + AT_rich Low_complexity Low_complexity 1 42 0 478 270 139 36 chr15 43082505 43082923 -58297598 + L1ME4a LINE L1 5640 6100 -21 227 221 15 15 chr15 43082943 43083011 -58297510 + L1MD3 LINE L1 7923 7990 -5 401 296 49 31 chr15 43083192 43083354 -58297167 - L2 LINE L2 -1 3312 3148 26 30 0 0 chr15 43083492 43083525 -58296996 + AT_rich Low_complexity Low_complexity 1 33 0 * 556 227 80 0 chr15 43083509 43083659 -58296862 + MIR SINE MIR 97 258 -4 683 272 6 6 chr15 43084426 43084599 -58295922 - MIR SINE MIR -10 252 80 3817 115 53 76 chr15 43084934 43085737 -58294784 - LTR1 LTR ERV1 0 785 1 275 182 18 0 chr15 43085782 43085837 -58294684 + L2 LINE L2 3256 3311 -2 319 305 50 13 chr15 43085888 43086012 -58294509 - MIR SINE MIR -65 143 31 328 259 80 85 chr15 43086185 43086409 -58294112 - MIR SINE MIR -27 235 13 285 193 96 36 chr15 43086498 43086581 -58293940 - LTR16C LTR ERVL -11 480 393 794 321 25 19 chr15 43086594 43086912 -58293609 + LTR16A LTR ERVL 47 366 -84 1453 89 27 0 chr15 43089779 43090004 -58290517 - L1MA9 LINE L1 0 6312 6082 1777 161 0 7 chr15 43090005 43090278 -58290243 + AluSx SINE Alu 1 271 -41 210 36 107 0 chr15 43090278 43090334 -58290187 + (TA)n Simple_repeat Simple_repeat 1 62 0 7400 181 19 15 chr15 43090334 43092671 -58287850 - L1MA9 LINE L1 -191 6121 3775 5939 145 0 11 chr15 43092817 43093830 -58286691 - L1P LINE L1 -3359 2787 1786 12596 125 5 6 chr15 43093831 43094156 -58286365 + L1PA8A LINE L1 3349 3673 -2458 396 0 0 0 chr15 43094156 43094200 -58286321 + (CA)n Simple_repeat Simple_repeat 2 45 0 12596 125 5 6 chr15 43094200 43096611 -58283910 + L1PA8A LINE L1 3673 6118 -13 203 162 0 0 chr15 43096749 43096786 -58283735 + T-rich Low_complexity Low_complexity 3 39 0 23 54 0 0 chr15 43097283 43097320 -58283201 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr15 43097347 43097370 -58283151 + AT_rich Low_complexity Low_complexity 1 23 0 440 323 173 19 chr15 43097575 43097888 -58282633 + L3 LINE CR1 1117 1477 -100 1363 198 189 28 chr15 43098699 43099134 -58281387 + MLT1D LTR MaLR 1 505 0 549 275 85 64 chr15 43099199 43099644 -58280877 - MLT1J LTR MaLR -21 594 38 1594 189 5 65 chr15 43099822 43100208 -58280313 - MLT1A1 LTR MaLR -2 363 1 1993 175 48 0 chr15 43100230 43100601 -58279920 - MLT1B LTR MaLR 0 390 2 302 327 97 22 chr15 43100658 43100884 -58279637 - L2 LINE L2 -451 2863 2621 1035 249 58 34 chr15 43101892 43102273 -58278248 - MLT1B LTR MaLR 0 390 1 548 291 80 25 chr15 43103802 43104039 -58276482 + MIR SINE MIR 10 259 -3 538 250 156 5 chr15 43105146 43105338 -58275183 + LTR33 LTR ERVL 54 274 -247 263 247 86 0 chr15 43105393 43105474 -58275047 + LTR33 LTR ERVL 434 521 0 1603 126 59 30 chr15 43106155 43106452 -58274069 - AluSg SINE Alu 0 307 3 644 155 14 106 chr15 43107579 43107786 -58272735 + MER53 DNA DNA 1 188 -1 844 357 59 28 chr15 43108680 43109437 -58271084 + ERVL LTR ERVL 4544 5324 -440 21 0 0 0 chr15 43109980 43110001 -58270520 + AT_rich Low_complexity Low_complexity 1 21 0 1100 289 43 102 chr15 43110003 43110836 -58269685 + L2 LINE L2 2498 3275 -38 757 227 160 14 chr15 43112835 43113117 -58267404 - L1ME3 LINE L1 -224 5938 5616 370 294 8 8 chr15 43113123 43113249 -58267272 + L1ME2 LINE L1 6026 6151 -13 524 316 37 64 chr15 43114359 43114590 -58265931 - MER102a DNA MER1_type -1111 306 96 1214 167 14 5 chr15 43114590 43114806 -58265715 - L1PA15 LINE L1 -3 6162 5945 524 316 37 64 chr15 43114806 43114900 -58265621 - MER102a DNA MER1_type -1321 96 1 2574 141 84 26 chr15 43114925 43115379 -58265142 - LTR12 LTR ERV1 -234 480 1 1412 326 101 32 chr15 43116180 43116521 -58264000 + L2 LINE L2 1322 1638 -1676 2579 17 0 7 chr15 43116521 43116814 -58263707 + AluYa5 SINE Alu 16 306 -5 1412 326 101 32 chr15 43116814 43117387 -58263134 + L2 LINE L2 1638 2299 -1015 1052 298 14 26 chr15 43117388 43117808 -58262713 + L1ME3A LINE L1 5560 5974 -196 5761 151 26 18 chr15 43117821 43119688 -58260833 + L1MA2 LINE L1 4220 6099 -205 2126 102 40 3 chr15 43119688 43120008 -58260513 + L1MA2 LINE L1 5968 6304 0 21 36 0 0 chr15 43120008 43120036 -58260485 + AT_rich Low_complexity Low_complexity 1 28 0 7297 186 33 11 chr15 43120202 43121475 -58259046 - L1P5 LINE L1 -599 5552 4230 1948 123 3 7 chr15 43121475 43121788 -58258733 - AluSq SINE Alu 0 312 1 7297 186 33 11 chr15 43121788 43122380 -58258141 - L1P5 LINE L1 -1921 4230 3652 1868 241 65 20 chr15 43122353 43123065 -58257456 - L1ME LINE L1 -686 5480 4735 * 4501 252 43 31 chr15 43123045 43123166 -58257355 - L1ME LINE L1 -1871 4773 4655 2350 97 0 0 chr15 43123166 43123474 -58257047 - AluSc SINE Alu -1 308 1 4501 252 43 31 chr15 43123474 43125108 -58255413 - L1ME LINE L1 -1989 4655 2997 * 11495 213 36 26 chr15 43125104 43127725 -58252796 - L1PA16 LINE L1 0 6869 4177 372 22 0 0 chr15 43127725 43127770 -58252751 + (TG)n Simple_repeat Simple_repeat 2 46 0 11495 213 36 26 chr15 43127770 43129242 -58251279 - L1PA16 LINE L1 -2692 4177 2721 1439 263 36 34 chr15 43129242 43130093 -58250428 - L1MEc LINE L1 -3633 3011 2200 4614 167 52 19 chr15 43130108 43130582 -58249939 - L1MA4 LINE L1 -2 6298 5841 207 0 0 0 chr15 43130582 43130605 -58249916 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 411 21 0 0 chr15 43130604 43130652 -58249869 + (TA)n Simple_repeat Simple_repeat 1 48 0 4614 167 52 19 chr15 43130605 43131139 -58249382 - L1MA4 LINE L1 -459 5841 5305 1697 265 58 65 chr15 43131134 43131260 -58249261 - L1MEc LINE L1 -4612 2034 1909 * 1271 179 151 0 chr15 43131260 43131511 -58249010 - AluJb SINE Alu -13 289 1 1697 265 58 65 chr15 43131511 43132191 -58248330 - L1MEc LINE L1 -4737 1909 1232 2091 141 118 8 chr15 43132191 43132573 -58247948 - MSTA LTR MaLR 0 428 5 1697 265 58 65 chr15 43132573 43132710 -58247811 - L1MEc LINE L1 -5414 1232 1096 2890 162 27 73 chr15 43132710 43133338 -58247183 - LTR9 LTR ERV1 0 612 14 3030 241 35 48 chr15 43133345 43134247 -58246274 - L1MEc LINE L1 -5650 892 2 1832 195 9 12 chr15 43134533 43134876 -58245645 - MER7A DNA MER2_type 0 346 7 555 217 0 91 chr15 43136519 43136662 -58243859 + FLAM_A SINE Alu 4 133 0 22 56 0 0 chr15 43136693 43136729 -58243792 + AT_rich Low_complexity Low_complexity 1 36 0 261 329 46 7 chr15 43136776 43136928 -58243593 - L1MC/D LINE L1 -1927 5950 5793 240 338 0 0 chr15 43137070 43137138 -58243383 - L1MC/D LINE L1 -2263 5614 5547 734 310 120 57 chr15 43137166 43137872 -58242649 - L1MC/D LINE L1 -1304 4911 4161 206 179 0 60 chr15 43137872 43137939 -58242582 + (TTATA)n Simple_repeat Simple_repeat 3 65 0 24 0 0 0 chr15 43138051 43138075 -58242446 + AT_rich Low_complexity Low_complexity 1 24 0 258 267 78 17 chr15 43138075 43138191 -58242330 - L1MC/D LINE L1 -2319 3896 3774 315 307 126 47 chr15 43138198 43138452 -58242069 - L1MC/D LINE L1 -2451 3764 3491 324 237 34 42 chr15 43138473 43138591 -58241930 + L1M4 LINE L1 3523 3639 -2507 2153 57 42 7 chr15 43138703 43138986 -58241535 + AluY SINE Alu 1 293 -18 227 264 71 47 chr15 43139548 43139870 -58240651 - L1MC/D LINE L1 -5061 1335 1006 1229 214 10 75 chr15 43140132 43140427 -58240094 - MSTD LTR MaLR 0 396 121 252 0 0 0 chr15 43140462 43140490 -58240031 + (TA)n Simple_repeat Simple_repeat 2 29 0 3179 67 0 7 chr15 43140566 43140969 -58239552 - MLT2A1 LTR ERVL -44 400 1 514 125 302 0 chr15 43140970 43141066 -58239455 - MSTD LTR MaLR -271 125 1 6387 249 25 38 chr15 43141066 43142822 -58237699 - MSTD-int LTR MaLR 0 1735 2 197 33 33 0 chr15 43142872 43142902 -58237619 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2046 135 22 19 chr15 43142902 43143264 -58237257 - L1PB1 LINE L1 -7 6144 5782 298 101 0 63 chr15 43143281 43143360 -58237161 + (TATATG)n Simple_repeat Simple_repeat 3 76 0 299 143 0 0 chr15 43143360 43143416 -58237105 + L1P5 LINE L1 5782 5837 -314 284 103 0 0 chr15 43143456 43143495 -58237026 + L1P5 LINE L1 5737 5775 -376 288 0 0 0 chr15 43143499 43143531 -58236990 + (TG)n Simple_repeat Simple_repeat 2 33 0 559 312 18 24 chr15 43143810 43143980 -58236541 + LTR33 LTR ERVL 9 177 -344 288 263 53 38 chr15 43144098 43144231 -58236290 + LTR33 LTR ERVL 385 519 -2 548 68 14 0 chr15 43144382 43144456 -58236065 + MADE1 DNA Mariner 1 75 -5 265 288 153 5 chr15 43144522 43144744 -58235777 - HAL1b LINE L1 -503 845 591 329 151 79 167 chr15 43144750 43144876 -58235645 + MER53 DNA DNA 4 118 -71 205 250 0 0 chr15 43144897 43144937 -58235584 + MIR SINE MIR 220 259 -3 708 243 97 69 chr15 43145086 43145554 -58234967 + MLT1H1 LTR MaLR 1 535 -14 21 0 0 0 chr15 43145917 43145938 -58234583 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr15 43146709 43146747 -58233774 + AT_rich Low_complexity Low_complexity 1 38 0 635 313 42 0 chr15 43146945 43147252 -58233269 - L1ME3A LINE L1 -223 5947 5628 2013 190 53 18 chr15 43147281 43147782 -58232739 - MER44D DNA MER2_type 0 605 1 278 307 64 49 chr15 43147795 43148059 -58232462 - L1ME3A LINE L1 -580 5582 5315 282 294 84 32 chr15 43148065 43148549 -58231972 - L1ME3A LINE L1 -861 5285 4766 22 0 0 0 chr15 43148629 43148651 -58231870 + AT_rich Low_complexity Low_complexity 1 22 0 572 284 97 34 chr15 43148870 43149331 -58231190 + L1MEc LINE L1 1664 2095 -4626 315 85 0 0 chr15 43149331 43149378 -58231143 + (TATAA)n Simple_repeat Simple_repeat 2 48 0 572 284 97 34 chr15 43149378 43149735 -58230786 + L1MEc LINE L1 2095 2610 -4111 311 252 44 71 chr15 43149755 43149981 -58230540 + L1MEc LINE L1 2641 2860 -3680 360 231 0 0 chr15 43150095 43150173 -58230348 + L1MEc LINE L1 3034 3111 -3429 378 0 0 0 chr15 43150258 43150305 -58230216 + (TAGA)n Simple_repeat Simple_repeat 1 89 0 378 0 0 0 chr15 43150305 43150347 -58230174 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 288 0 0 0 chr15 43150388 43150420 -58230101 + (TG)n Simple_repeat Simple_repeat 2 33 0 301 222 16 0 chr15 43150461 43150524 -58229997 - AluJ/FRAM SINE Alu -9 293 230 5464 121 15 10 chr15 43150538 43151468 -58229053 - L1PA13 LINE L1 0 6163 5203 6417 177 5 47 chr15 43151473 43152161 -58228360 + L1P LINE L1 3819 4469 -1677 265 89 22 0 chr15 43152161 43152206 -58228315 + MADE1 DNA Mariner 1 46 -34 6417 177 5 47 chr15 43152206 43152832 -58227689 + L1P LINE L1 4469 5120 -1026 19447 85 27 2 chr15 43152837 43155408 -58225113 + HERVL-A2 LTR ERVL 3019 5654 0 2322 152 55 19 chr15 43155408 43155924 -58224597 + MLT2A2 LTR ERVL 1 554 0 271 111 0 0 chr15 43155924 43155969 -58224552 + L1P LINE L1 5116 5160 -986 * 1015 290 93 55 chr15 43155961 43157228 -58223293 + L1MEc LINE L1 3254 4569 -1971 22 70 0 0 chr15 43157529 43157572 -58222949 + AT_rich Low_complexity Low_complexity 1 43 0 25440 141 13 22 chr15 43157608 43162815 -58217706 - L1PA15 LINE L1 0 6480 1247 189 74 0 0 chr15 43162815 43162842 -58217679 + (TTG)n Simple_repeat Simple_repeat 1 27 0 25440 141 13 22 chr15 43162842 43164078 -58216443 - L1PA15 LINE L1 -5233 1247 1 29 28 0 0 chr15 43164712 43164748 -58215773 + AT_rich Low_complexity Low_complexity 1 36 0 7918 15 0 1 chr15 43164781 43166015 -58214506 - L1HS LINE L1 0 6155 4923 3465 27 14 0 chr15 43166000 43166414 -58214107 + L1P LINE L1 4552 4971 -1175 * 1986 129 7 24 chr15 43166475 43166770 -58213751 - AluSx SINE Alu -20 292 3 814 198 20 10 chr15 43167182 43167379 -58213142 - L1MD1 LINE L1 0 6242 6044 290 205 0 26 chr15 43167405 43167483 -58213038 - L1MD1 LINE L1 -123 6119 6044 * 295 205 0 26 chr15 43167457 43167535 -58212986 - L1MD1 LINE L1 -123 6119 6044 281 205 0 26 chr15 43167561 43167639 -58212882 - L1MD1 LINE L1 -123 6119 6044 * 2203 224 25 22 chr15 43167613 43167697 -58212824 - L1MD1 LINE L1 -123 6119 6037 1613 154 37 7 chr15 43167697 43167969 -58212552 - AluJo SINE Alu -19 293 14 2203 224 25 22 chr15 43167969 43168409 -58212112 - L1MD1 LINE L1 -205 6037 5590 7458 35 0 0 chr15 43168409 43169796 -58210725 - L1PA4 LINE L1 -5 6150 4764 2203 224 25 22 chr15 43169796 43169824 -58210697 - L1MD1 LINE L1 -652 5590 5564 902 257 45 7 chr15 43169809 43170097 -58210424 - L1MD1 LINE L1 -2300 3846 3548 * 822 250 43 31 chr15 43170129 43170518 -58210003 - PABL_B LTR ERV1 -1 666 263 655 92 0 146 chr15 43170529 43170659 -58209862 - LTR19C LTR ERV1 -354 425 315 257 235 0 0 chr15 43170730 43170781 -58209740 - PABL_B LTR ERV1 -616 51 1 400 246 66 70 chr15 43170782 43171237 -58209284 - L1MD1 LINE L1 -2617 3529 3077 * 6906 196 81 5 chr15 43171205 43172647 -58207874 - L1 LINE L1 -997 5149 3201 7703 98 8 4 chr15 43172647 43174563 -58205958 - L1PA8 LINE L1 0 6172 4237 6906 196 81 5 chr15 43174563 43175164 -58205357 - L1 LINE L1 -2945 3201 2647 10613 172 12 5 chr15 43175178 43176918 -58203603 - L1 LINE L1 -5573 1992 241 24 32 0 0 chr15 43177286 43177317 -58203204 + AT_rich Low_complexity Low_complexity 1 31 0 1057 202 15 4 chr15 43177337 43177609 -58202912 - L1P LINE L1 -762 5384 5110 * 4053 127 19 0 chr15 43177607 43178229 -58202292 + L1PB1 LINE L1 5467 6100 -51 253 281 98 0 chr15 43178878 43178960 -58201561 - MIR SINE MIR -110 152 63 801 221 55 0 chr15 43179020 43179219 -58201302 + MLT2B2 LTR ERVL 1 210 -305 354 263 93 17 chr15 43179370 43179488 -58201033 + MIR SINE MIR 15 141 -121 1245 198 73 27 chr15 43179731 43180059 -58200462 - MER2 DNA MER2_type -1 343 1 1888 180 14 6 chr15 43180484 43180828 -58199693 + MER7A DNA MER2_type 2 346 0 501 62 0 0 chr15 43181156 43181221 -58199300 + (TA)n Simple_repeat Simple_repeat 1 65 0 5650 121 29 9 chr15 43181265 43182279 -58198242 - L1PB1 LINE L1 -2 6149 5118 23 0 0 0 chr15 43182562 43182585 -58197936 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr15 43182602 43182634 -58197887 + AT_rich Low_complexity Low_complexity 1 32 0 205 167 0 69 chr15 43182863 43182935 -58197586 + T-rich Low_complexity Low_complexity 6 72 0 23 54 0 0 chr15 43183168 43183205 -58197316 + AT_rich Low_complexity Low_complexity 1 37 0 332 339 36 0 chr15 43183718 43183830 -58196691 + L2 LINE L2 3142 3257 -15 225 241 109 40 chr15 43183973 43184147 -58196374 - L1M4 LINE L1 -1593 4553 4368 25 31 0 0 chr15 43184177 43184209 -58196312 + AT_rich Low_complexity Low_complexity 1 32 0 645 288 128 31 chr15 43184603 43185016 -58195505 + L1MCc LINE L1 17 469 -5954 * 1053 304 27 33 chr15 43185012 43185377 -58195144 + L1M3a LINE L1 33 395 -5560 307 342 32 26 chr15 43185473 43185628 -58194893 + L1M3a LINE L1 549 704 -5251 2569 271 49 42 chr15 43185672 43186652 -58193869 + L1M2 LINE L1 302 1274 -4760 2198 110 0 3 chr15 43186652 43186951 -58193570 + AluSq SINE Alu 2 299 -14 2569 271 49 42 chr15 43186951 43187494 -58193027 + L1M2 LINE L1 1274 1812 -4222 2305 79 0 55 chr15 43187494 43187822 -58192699 + AluY SINE Alu 1 310 -1 2569 271 49 42 chr15 43187822 43189144 -58191377 + L1M2 LINE L1 1812 2875 -3159 2021 203 25 36 chr15 43189164 43189612 -58190909 + MSTB2 LTR MaLR 15 457 0 5321 203 32 5 chr15 43189612 43190919 -58189602 + L1M2 LINE L1 2888 4229 -1805 3264 21 0 0 chr15 43190914 43191289 -58189232 - L1P2 LINE L1 -375 5779 5405 * 4055 202 42 19 chr15 43191313 43191971 -58188550 + L1M2 LINE L1 4217 4858 -1321 2188 123 0 0 chr15 43191971 43192272 -58188249 + AluSx SINE Alu 1 301 -11 4055 202 42 19 chr15 43192272 43192720 -58187801 + L1M2 LINE L1 4858 5294 -885 189 0 0 0 chr15 43192720 43192741 -58187780 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1990 135 0 0 chr15 43192742 43193054 -58187467 + AluSx SINE Alu 1 312 0 4055 202 42 19 chr15 43193054 43193345 -58187176 + L1M2 LINE L1 5293 5651 -528 858 339 28 10 chr15 43193362 43193760 -58186761 + L1PA12 LINE L1 10 414 -7167 12631 242 34 24 chr15 43194398 43194919 -58185602 + L1PA12 LINE L1 2182 2696 -4888 1940 127 0 24 chr15 43194919 43195245 -58185276 + AluSq SINE Alu 1 319 0 12631 242 34 24 chr15 43195245 43199049 -58181472 + L1PA12 LINE L1 2696 6573 -1011 201 94 0 0 chr15 43199049 43199081 -58181440 + (CAA)n Simple_repeat Simple_repeat 1 32 0 12631 242 34 24 chr15 43199081 43199208 -58181313 + L1PA12 LINE L1 6573 6697 -887 3286 188 27 15 chr15 43199216 43200384 -58180137 - L1MA9 LINE L1 -365 5947 4768 2218 175 42 5 chr15 43200370 43200804 -58179717 + L1MC1 LINE L1 5258 5707 -626 * 1807 146 52 9 chr15 43200804 43201131 -58179390 + L1MC1 LINE L1 5992 6333 0 333 284 18 18 chr15 43201138 43201247 -58179274 - MER5A DNA MER1_type -77 112 4 296 0 51 0 chr15 43201809 43201848 -58178673 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 1946 124 7 3 chr15 43201852 43202134 -58178387 - AluSx SINE Alu -29 283 1 196 118 20 20 chr15 43203474 43203525 -58176996 + (TA)n Simple_repeat Simple_repeat 2 52 0 2263 107 0 0 chr15 43204772 43205071 -58175450 - AluSx SINE Alu -13 299 1 252 367 41 30 chr15 43205630 43205799 -58174722 + MIR SINE MIR 76 246 -16 455 295 126 19 chr15 43206728 43206935 -58173586 + MIR SINE MIR 34 262 0 204 40 0 0 chr15 43206941 43206966 -58173555 + (ATG)n Simple_repeat Simple_repeat 2 26 0 640 85 54 16 chr15 43207393 43207522 -58172999 + CT-rich Low_complexity Low_complexity 3 136 0 4680 158 20 22 chr15 43208561 43208980 -58171541 - L1MA9 LINE L1 -74 6238 5820 2358 100 0 3 chr15 43208980 43209291 -58171230 - AluSg SINE Alu 0 310 1 4680 158 20 22 chr15 43209291 43209758 -58170763 - L1MA9 LINE L1 -492 5820 5354 2255 107 3 0 chr15 43210695 43210995 -58169526 + AluSp SINE Alu 4 304 -9 304 167 69 0 chr15 43210999 43211071 -58169450 + L1ME2 LINE L1 5728 5804 -358 2610 120 63 18 chr15 43211072 43211514 -58169007 + MER4B LTR ERV1 1 462 -148 2409 151 31 5 chr15 43211514 43211937 -58168584 - MER57B LTR ERV1 0 434 1 1670 77 113 12 chr15 43211937 43212184 -58168337 - MER57B-int LTR ERV1 0 7537 7266 563 200 26 0 chr15 43212186 43212301 -58168220 - LTR54B LTR ERV1 -378 120 3 2127 131 48 12 chr15 43212302 43212638 -58167883 - MER57-int LTR ERV1 -388 7149 6802 * 4063 144 41 6 chr15 43212612 43213291 -58167230 - MER57-int LTR ERV1 -3823 3714 3012 273 98 0 0 chr15 43213291 43213332 -58167189 - MER57-int LTR ERV1 -4628 2909 2869 1092 236 25 14 chr15 43213392 43213676 -58166845 + L1ME2 LINE L1 5798 6084 -80 180 0 0 0 chr15 43213717 43213737 -58166784 + (TAAAA)n Simple_repeat Simple_repeat 5 24 0 268 306 0 0 chr15 43214242 43214304 -58166217 - LTR33 LTR ERVL -153 368 307 237 103 0 0 chr15 43214736 43214775 -58165746 + MADE1 DNA Mariner 42 80 0 731 316 135 28 chr15 43215056 43215600 -58164921 - L2 LINE L2 -168 3145 2530 228 276 79 39 chr15 43215750 43215877 -58164644 + MIR SINE MIR 77 208 -54 32 0 0 0 chr15 43217151 43217183 -58163338 + AT_rich Low_complexity Low_complexity 1 32 0 2675 233 75 19 chr15 43217183 43217983 -58162538 + L1ME1 LINE L1 5316 6160 -6 247 237 0 0 chr15 43217983 43218042 -58162479 + L1ME1 LINE L1 6101 6159 -7 451 299 55 39 chr15 43218067 43218555 -58161966 + L1ME3A LINE L1 3352 3847 -2299 438 225 56 94 chr15 43218550 43218644 -58161877 + L1MC4 LINE L1 7759 7855 -187 * 2041 134 76 17 chr15 43218644 43218988 -58161533 - THE1B LTR MaLR 0 364 1 438 225 56 94 chr15 43218988 43219160 -58161361 + L1MC4 LINE L1 7855 8015 -27 873 297 92 13 chr15 43219350 43220097 -58160424 + L1ME3A LINE L1 4012 4817 -1329 1421 282 119 28 chr15 43220103 43221232 -58159289 + L1ME3A LINE L1 4931 6170 0 22 35 0 0 chr15 43222272 43222301 -58158220 + AT_rich Low_complexity Low_complexity 1 29 0 198 263 26 66 chr15 43222330 43222406 -58158115 + L2 LINE L2 511 583 -2731 338 279 76 63 chr15 43222637 43222874 -58157647 - L1 LINE L1 -3692 2454 2215 416 319 92 35 chr15 43222940 43223341 -58157180 - LTR33 LTR ERVL -67 454 31 1805 314 34 11 chr15 43224224 43224835 -58155686 - ERVL LTR ERVL -1084 4680 4056 465 324 51 12 chr15 43224889 43225485 -58155036 - ERVL LTR ERVL -2171 3593 2882 791 118 22 37 chr15 43225542 43225677 -58154844 + FLAM_C SINE Alu 1 133 0 611 312 36 25 chr15 43225714 43226142 -58154379 - LTR33 LTR ERVL -57 464 1 21 0 0 0 chr15 43228317 43228338 -58152183 + AT_rich Low_complexity Low_complexity 1 21 0 613 328 98 25 chr15 43228617 43229013 -58151508 + L3 LINE CR1 1152 1576 -1 358 300 55 82 chr15 43229102 43229322 -58151199 + MIR SINE MIR 3 216 -46 330 345 70 48 chr15 43229791 43230782 -58149739 + L1MEc LINE L1 22 1033 -5363 * 510 316 26 16 chr15 43230773 43231083 -58149438 + L1MEc LINE L1 1445 1757 -4639 * 811 136 44 2 chr15 43231057 43231213 -58149308 - L1P LINE L1 -2033 4113 3938 321 216 10 39 chr15 43231715 43231817 -58148704 + L1ME2 LINE L1 5710 5808 -356 814 236 93 23 chr15 43231833 43232091 -58148430 + L1ME2 LINE L1 5888 6163 -1 1807 238 47 60 chr15 43232334 43232968 -58147553 + MLT1E2 LTR MaLR 1 626 0 1346 158 132 35 chr15 43233098 43233440 -58147081 - THE1C LTR MaLR 0 375 1 391 335 158 5 chr15 43234998 43235201 -58145320 - MIR SINE MIR -4 258 25 1057 209 20 43 chr15 43235446 43235700 -58144821 + MER96B DNA MER1_type? 1 248 -169 21 0 0 0 chr15 43235974 43235995 -58144526 + AT_rich Low_complexity Low_complexity 1 21 0 338 399 33 0 chr15 43236642 43236855 -58143666 + HAL1b LINE L1 714 933 -415 1633 164 48 56 chr15 43237445 43237626 -58142895 + THE1C LTR MaLR 1 182 -193 1868 140 7 4 chr15 43237626 43237955 -58142566 + AluSx SINE Alu 7 336 0 1633 164 48 56 chr15 43237955 43238150 -58142371 + THE1C LTR MaLR 182 375 0 1456 158 0 4 chr15 43238237 43238477 -58142044 - Tigger5 DNA MER2_type 0 2323 2085 363 191 0 16 chr15 43238498 43238561 -58141960 - Tigger5 DNA MER2_type -2261 62 1 218 259 0 0 chr15 43238609 43238663 -58141858 + GA-rich Low_complexity Low_complexity 1 54 0 341 248 86 50 chr15 43238756 43238954 -58141567 + L1ME3A LINE L1 4132 4336 -1810 293 299 0 0 chr15 43239013 43239080 -58141441 - MER96B DNA MER1_type? -107 68 2 505 321 6 0 chr15 43239093 43239258 -58141263 + L1ME3A LINE L1 5401 5566 -596 242 259 0 0 chr15 43239263 43239317 -58141204 + L1ME3A LINE L1 5664 5717 -453 450 216 29 0 chr15 43239352 43239454 -58141067 + L1ME3A LINE L1 5797 5901 -269 1376 223 117 45 chr15 43239455 43239822 -58140699 - MLT1D LTR MaLR 0 505 95 2250 96 3 10 chr15 43239822 43240135 -58140386 - AluSx SINE Alu -1 311 1 1376 223 117 45 chr15 43240135 43240238 -58140283 - MLT1D LTR MaLR -410 95 1 241 143 179 48 chr15 43240773 43240857 -58139664 - L1ME4a LINE L1 -41 6080 5986 * 256 191 113 52 chr15 43240833 43240948 -58139573 + HAL1b LINE L1 1225 1346 -2 248 254 30 130 chr15 43241016 43241185 -58139336 - MIR SINE MIR -12 250 99 238 50 50 0 chr15 43243630 43243670 -58136851 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 211 351 52 30 chr15 43243891 43244025 -58136496 - MIR SINE MIR -45 217 81 405 198 12 0 chr15 43244071 43244152 -58136369 + MER94 DNA DNA 4 85 -49 323 298 63 24 chr15 43244320 43244525 -58135996 - L1ME4a LINE L1 -175 5946 5734 1286 211 45 23 chr15 43244761 43245069 -58135452 - MLT1A2 LTR MaLR 0 374 60 342 276 113 43 chr15 43245173 43245358 -58135163 - L1ME4a LINE L1 -2272 3874 3677 29 70 0 0 chr15 43246907 43246964 -58133557 + AT_rich Low_complexity Low_complexity 1 57 0 1127 137 168 0 chr15 43247699 43247925 -58132596 + MER21A LTR ERV1 1 264 -667 2866 134 79 28 chr15 43247930 43248459 -58132062 + MER21A LTR ERV1 376 931 0 1353 188 8 13 chr15 43249751 43249990 -58130531 + MER41D LTR ERV1 320 557 0 1971 311 172 14 chr15 43249995 43250607 -58129914 - HAL1 LINE L1 -364 2143 1629 423 0 0 0 chr15 43250607 43250654 -58129867 + (TG)n Simple_repeat Simple_repeat 2 48 0 1971 311 172 14 chr15 43250654 43251778 -58128743 - HAL1 LINE L1 -878 1629 134 2020 128 0 30 chr15 43252507 43252812 -58127709 + AluSx SINE Alu 1 296 -16 1712 132 147 24 chr15 43254277 43254611 -58125910 + THE1C LTR MaLR 1 375 0 2236 74 10 17 chr15 43255778 43256075 -58124446 - AluY SINE Alu -16 295 1 1918 133 3 20 chr15 43256341 43256642 -58123879 + AluSx SINE Alu 1 296 -16 548 250 71 35 chr15 43257168 43257486 -58123035 - L1MC4 LINE L1 -733 7228 6930 21 0 0 0 chr15 43257490 43257511 -58123010 + AT_rich Low_complexity Low_complexity 1 21 0 659 312 52 55 chr15 43257597 43257962 -58122559 + L1MB1 LINE L1 5 368 -5523 452 328 42 51 chr15 43258024 43258409 -58122112 + L1MB1 LINE L1 193 513 -5378 665 313 4 8 chr15 43258579 43258825 -58121696 + L1MB1 LINE L1 666 910 -4991 9412 208 35 23 chr15 43258840 43260920 -58119601 + L1MB1 LINE L1 2531 4671 -1321 1787 132 4 4 chr15 43260920 43261186 -58119335 + AluSx SINE Alu 39 304 -8 9412 208 35 23 chr15 43261186 43262512 -58118009 + L1MB1 LINE L1 4671 5979 -13 1030 324 77 20 chr15 43262520 43263123 -58117398 - L2 LINE L2 -90 3223 2574 1233 242 36 15 chr15 43264768 43265099 -58115422 + MLT1A1 LTR MaLR 26 363 -2 400 127 0 32 chr15 43265664 43265727 -58114794 - AluJo SINE Alu -17 295 235 360 230 0 0 chr15 43265727 43265801 -58114720 - MER52A LTR ERV1 0 1755 1682 * 3752 189 107 80 chr15 43265791 43266932 -58113589 - MER52A LTR ERV1 -559 1196 25 1131 232 4 8 chr15 43266937 43267178 -58113343 - AluJo SINE Alu -72 240 1 1514 167 54 70 chr15 43268219 43268306 -58112215 + MLT1A1 LTR MaLR 1 88 -277 2161 115 0 0 chr15 43268306 43268621 -58111900 + AluSg SINE Alu 3 317 0 1514 167 54 70 chr15 43268621 43268903 -58111618 + MLT1A1 LTR MaLR 88 365 0 25 31 0 0 chr15 43269620 43269652 -58110869 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chr15 43271148 43271181 -58109340 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr15 43272059 43272082 -58108439 + AT_rich Low_complexity Low_complexity 1 23 0 1488 199 0 27 chr15 43272364 43272660 -58107861 - AluJo SINE Alu -22 290 3 197 260 20 0 chr15 43272940 43272990 -58107531 + L2 LINE L2 3217 3267 -5 290 323 46 36 chr15 43273175 43273370 -58107151 - L2 LINE L2 0 3313 3117 1971 156 11 11 chr15 43273746 43274093 -58106428 - MER7A DNA MER2_type -1 345 1 8523 99 28 11 chr15 43275145 43275948 -58104573 - L1PA8 LINE L1 0 6172 5384 2157 116 0 7 chr15 43275948 43276251 -58104270 - AluSq SINE Alu -12 301 1 8523 99 28 11 chr15 43276251 43277542 -58102979 - L1PA8 LINE L1 -788 5384 4044 1271 197 197 0 chr15 43278667 43279052 -58101469 + Charlie1b DNA MER1_type 56 516 -7 1134 225 14 5 chr15 43279157 43279379 -58101142 - MER58A DNA MER1_type 0 224 1 435 68 0 0 chr15 43279423 43279482 -58101039 + (TG)n Simple_repeat Simple_repeat 1 59 0 292 351 32 44 chr15 43279516 43279764 -58100757 - MIR SINE MIR -6 256 12 218 261 118 98 chr15 43279836 43279989 -58100532 - MIR SINE MIR -56 206 51 677 211 42 66 chr15 43281818 43282031 -58098490 + L1ME3 LINE L1 5857 6064 -98 290 285 131 36 chr15 43282092 43282229 -58098292 - MER5A DNA MER1_type -30 159 10 21 71 0 0 chr15 43282763 43282805 -58097716 + AT_rich Low_complexity Low_complexity 1 42 0 24 53 0 0 chr15 43283030 43283068 -58097453 + AT_rich Low_complexity Low_complexity 1 38 0 6870 139 4 10 chr15 43283072 43284646 -58095875 - L1MA2 LINE L1 0 6304 4738 2141 68 0 44 chr15 43284654 43284995 -58095526 - AluY SINE Alu 0 328 1 2493 170 10 5 chr15 43285169 43285581 -58094940 + L1M4c LINE L1 19 432 -5952 4047 27 4 0 chr15 43285591 43286070 -58094451 - L1PA3 LINE L1 -1 6154 5674 699 153 7 35 chr15 43286070 43286214 -58094307 - L1M4c LINE L1 -5829 555 416 246 59 0 0 chr15 43286212 43286246 -58094275 - L1P1 LINE L1 -488 5667 5634 * 4737 191 41 26 chr15 43286300 43287397 -58093124 + L1M4c LINE L1 416 1528 -4856 476 252 0 0 chr15 43287394 43287521 -58093000 + L1P LINE L1 3367 3493 -2653 * 4376 202 19 1 chr15 43287517 43288433 -58092088 + L1 LINE L1 3414 4345 -1801 2130 126 0 0 chr15 43288445 43288738 -58091783 + AluSx SINE Alu 3 295 -17 6699 241 40 14 chr15 43288757 43290900 -58089621 - L1 LINE L1 -2016 5549 3356 320 220 0 49 chr15 43290914 43291017 -58089504 - L1 LINE L1 -4157 3409 3039 1126 186 5 9 chr15 43291024 43291245 -58089276 - Tigger5 DNA MER2_type 0 2323 2104 17300 176 50 17 chr15 43291245 43296889 -58083632 - L1M4 LINE L1 -942 6623 642 1384 139 15 0 chr15 43296889 43297090 -58083431 - AluSg SINE Alu -106 204 1 301 186 26 88 chr15 43297096 43297209 -58083312 - L1M4 LINE L1 -7457 108 3 * 956 276 31 19 chr15 43297208 43297530 -58082991 + L1MEc LINE L1 265 590 -5806 1117 292 108 29 chr15 43297553 43298405 -58082116 + L1MEc LINE L1 1133 2051 -4345 5534 75 26 51 chr15 43298444 43299332 -58081189 + SVA Other Other 1 866 -520 2556 145 13 38 chr15 43299349 43299950 -58080571 + SVA Other Other 549 1134 -252 987 206 42 21 chr15 43302963 43303250 -58077271 + L1MA5 LINE L1 6000 6292 -8 563 274 156 4 chr15 43303278 43303548 -58076973 - Charlie2 DNA MER1_type -687 2175 1865 731 267 42 59 chr15 43303554 43303861 -58076660 - Charlie2 DNA MER1_type -2480 302 1 1337 219 84 13 chr15 43304099 43304410 -58076111 + L1MCa LINE L1 7 339 -6087 280 208 271 0 chr15 43304472 43304568 -58075953 + L1 LINE L1 1238 1359 -4998 1167 215 14 24 chr15 43304702 43304995 -58075526 + L1 LINE L1 6334 6623 -942 1057 199 5 9 chr15 43304995 43305216 -58075305 + Tigger5 DNA MER2_type 2104 2323 0 320 220 0 49 chr15 43305223 43305326 -58075195 + L1M3b LINE L1 3039 3409 -4157 3554 182 21 12 chr15 43305540 43306663 -58073858 - L1MB1 LINE L1 -227 5941 4809 609 264 6 6 chr15 43306674 43306837 -58073684 - AluSg/x SINE Alu -29 283 121 6220 75 16 45 chr15 43306964 43308117 -58072404 + SVA Other Other 433 1386 0 207 0 0 0 chr15 43308142 43308165 -58072356 + (A)n Simple_repeat Simple_repeat 1 23 0 1213 262 50 14 chr15 43308222 43308775 -58071746 + L1MCa LINE L1 2250 2782 -3644 250 291 18 18 chr15 43308841 43308951 -58071570 - MER4E LTR ERV1 -39 740 631 21 0 0 0 chr15 43308996 43309017 -58071504 + AT_rich Low_complexity Low_complexity 1 21 0 186 103 0 0 chr15 43311630 43311659 -58068862 + (TG)n Simple_repeat Simple_repeat 2 30 0 575 333 52 13 chr15 43313439 43313670 -58066851 + MIR SINE MIR 23 262 0 289 219 208 0 chr15 43313704 43313800 -58066721 - L1ME1 LINE L1 -26 6140 6025 255 408 41 10 chr15 43313800 43313996 -58066525 - MIR3 SINE MIR -2 206 5 1379 242 149 48 chr15 43314676 43315286 -58065235 - Charlie2 DNA MER1_type -1 2861 2128 1988 136 60 8 chr15 43315286 43315655 -58064866 + L1MA5 LINE L1 5908 6295 -5 1379 242 149 48 chr15 43315655 43315949 -58064572 - Charlie2 DNA MER1_type -734 2128 1865 779 268 41 57 chr15 43315945 43316262 -58064259 - Charlie2 DNA MER1_type -2550 312 1 * 1337 219 84 13 chr15 43316500 43316811 -58063710 + L1MCa LINE L1 7 339 -6087 6392 253 79 14 chr15 43316873 43320117 -58060404 + L1MA7 LINE L1 979 4423 -1959 2551 194 27 11 chr15 43320127 43320685 -58059836 + L1MA7 LINE L1 4859 5425 -957 320 203 0 0 chr15 43320685 43320744 -58059777 + L1MA7 LINE L1 6086 6144 -383 426 137 0 84 chr15 43320749 43320844 -58059677 - L1M2 LINE L1 -827 5464 5378 5380 240 42 20 chr15 43320886 43322459 -58058062 + L1M4 LINE L1 3627 5234 -912 562 250 40 28 chr15 43322471 43322751 -58057770 + L1MCa LINE L1 1266 1676 -4868 5355 163 50 15 chr15 43322968 43324069 -58056452 + L1MC1 LINE L1 5422 6554 -15 24 0 0 0 chr15 43324469 43324493 -58056028 + AT_rich Low_complexity Low_complexity 1 24 0 1938 158 90 20 chr15 43324517 43324916 -58055605 - MSTA LTR MaLR -1 427 1 23 33 0 0 chr15 43326293 43326323 -58054198 + AT_rich Low_complexity Low_complexity 1 30 0 216 97 0 0 chr15 43327147 43327178 -58053343 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 585 216 182 0 chr15 43327314 43327462 -58053059 - MER69A DNA AcHobo -2 175 1 480 261 121 25 chr15 43327494 43327651 -58052870 + MIR SINE MIR 85 256 -6 2401 64 0 6 chr15 43328942 43329255 -58051266 + AluY SINE Alu 1 311 0 188 342 70 63 chr15 43329295 43329453 -58051068 - L2 LINE L2 -601 2713 2555 36 53 0 0 chr15 43329903 43329960 -58050561 + AT_rich Low_complexity Low_complexity 1 57 0 481 252 173 18 chr15 43330201 43330427 -58050094 - L1ME3A LINE L1 -244 5926 5666 194 227 0 0 chr15 43331811 43331855 -58048666 + L2 LINE L2 3270 3313 0 183 42 0 0 chr15 43332335 43332359 -58048162 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 308 379 42 25 chr15 43332535 43332775 -58047746 - L2 LINE L2 -211 3061 2818 1805 245 40 30 chr15 43334028 43334382 -58046139 + L1M4 LINE L1 4017 4383 -1763 2001 111 0 7 chr15 43334382 43334662 -58045859 + AluSg SINE Alu 16 293 -17 1805 245 40 30 chr15 43334662 43334951 -58045570 + L1M4 LINE L1 4383 4667 -1479 1258 104 0 16 chr15 43334940 43335122 -58045399 - THE1-int LTR MaLR -164 1416 1238 * 1518 260 28 12 chr15 43335132 43335639 -58044882 + L1M4 LINE L1 4660 5174 -972 1058 118 43 0 chr15 43335639 43335800 -58044721 - THE1C LTR MaLR 0 375 208 2526 117 0 3 chr15 43335802 43336145 -58044376 + THE1C LTR MaLR 34 375 0 943 246 0 0 chr15 43336145 43336348 -58044173 + L1PA16 LINE L1 5962 6164 -2 238 318 125 0 chr15 43336616 43336704 -58043817 + L2 LINE L2 3143 3241 -31 679 227 31 49 chr15 43336741 43336966 -58043555 - MER65B LTR ERV1 -129 402 182 22 70 0 0 chr15 43337390 43337433 -58043088 + AT_rich Low_complexity Low_complexity 1 43 0 300 321 186 0 chr15 43337669 43337884 -58042637 - L1ME4a LINE L1 -3 6118 5864 338 240 123 39 chr15 43337906 43338085 -58042436 - L1ME4a LINE L1 -1 6120 5927 321 325 58 37 chr15 43338088 43338279 -58042242 - L1ME3A LINE L1 -563 5558 5364 42843 35 21 1 chr15 43339426 43345454 -58035067 + L1PA2 LINE L1 1 6150 -5 34 42 0 0 chr15 43345471 43345519 -58035002 + AT_rich Low_complexity Low_complexity 1 48 0 1444 211 63 0 chr15 43345658 43345961 -58034560 - L1MC1 LINE L1 -23 6310 5989 279 303 174 8 chr15 43346723 43346855 -58033666 - L2 LINE L2 0 3313 3160 199 244 0 0 chr15 43347109 43347154 -58033367 - MIR3 SINE MIR -12 196 152 312 287 33 16 chr15 43347154 43347276 -58033245 - MER117 DNA MER1_type 0 197 74 1053 285 50 67 chr15 43347791 43348170 -58032351 - L2 LINE L2 0 3313 2942 2250 87 0 3 chr15 43348170 43348456 -58032065 - AluSc SINE Alu -24 285 1 1053 285 50 67 chr15 43348456 43348571 -58031950 - L2 LINE L2 -371 2942 2827 2834 10 0 0 chr15 43348672 43348981 -58031540 - AluYa5 SINE Alu -2 309 1 556 281 49 30 chr15 43349994 43350197 -58030324 + MIR SINE MIR 53 259 -3 1628 168 7 105 chr15 43350538 43350948 -58029573 - MLT1A2 LTR MaLR 0 374 5 570 283 126 44 chr15 43351065 43351454 -58029067 + MLT1H LTR MaLR 124 544 -5 772 282 115 42 chr15 43351704 43352105 -58028416 - MLT1J LTR MaLR 0 511 82 489 211 22 60 chr15 43352386 43352571 -58027950 - L1MC5 LINE L1 -30 7931 7754 186 43 0 0 chr15 43353717 43353740 -58026781 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 495 158 9 70 chr15 43354461 43354575 -58025946 + MER53 DNA DNA 1 107 -82 820 168 25 6 chr15 43354933 43355094 -58025427 - L1MB1 LINE L1 -1 6167 6004 23 33 0 0 chr15 43355153 43355183 -58025338 + AT_rich Low_complexity Low_complexity 1 30 0 1944 203 84 36 chr15 43355501 43355975 -58024546 - MLT1D LTR MaLR -8 497 1 585 254 180 0 chr15 43356383 43356572 -58023949 + MIR SINE MIR 5 227 -35 211 380 0 0 chr15 43357241 43357320 -58023201 - L2 LINE L2 -3 3310 3232 22 0 0 0 chr15 43358447 43358469 -58022052 + GC_rich Low_complexity Low_complexity 1 22 0 399 234 21 0 chr15 43359862 43360007 -58020514 + (TA)n Simple_repeat Simple_repeat 1 148 0 272 238 16 0 chr15 43363039 43363102 -58017419 + CT-rich Low_complexity Low_complexity 1 64 0 1335 220 0 14 chr15 43364785 43365071 -58015450 + AluJb SINE Alu 5 286 -26 1036 284 150 0 chr15 43365875 43366209 -58014312 + L2 LINE L2 1117 1500 -1814 304 313 78 35 chr15 43366215 43366445 -58014076 + L1ME LINE L1 5523 5762 -359 395 361 61 0 chr15 43366791 43366971 -58013550 + L2 LINE L2 2476 2666 -648 642 257 76 0 chr15 43366992 43367163 -58013358 + MIR SINE MIR 5 188 -74 1285 154 31 18 chr15 43367163 43367390 -58013131 + MER46A DNA MER2_type 6 235 -1 261 341 16 23 chr15 43367416 43367545 -58012976 + L2 LINE L2 2709 2836 -478 203 0 37 0 chr15 43367545 43367572 -58012949 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 539 313 84 43 chr15 43367580 43367951 -58012570 + L2 LINE L2 2921 3306 -7 540 81 0 0 chr15 43367957 43368031 -58012490 + (TGGA)n Simple_repeat Simple_repeat 1 74 0 202 348 45 9 chr15 43369328 43369440 -58011081 - MIR SINE MIR -51 211 96 497 163 0 11 chr15 43371905 43371997 -58008524 - L1MA8 LINE L1 -426 5874 5784 1801 146 60 3 chr15 43371997 43372358 -58008163 + L1MA8 LINE L1 5904 6288 -3 376 335 72 31 chr15 43373726 43373920 -58006601 - MIR SINE MIR -3 259 58 21 0 0 0 chr15 43374311 43374332 -58006189 + AT_rich Low_complexity Low_complexity 1 21 0 2257 149 82 9 chr15 43375465 43375984 -58004537 + LTR35 LTR ERV1 1 618 0 4306 148 11 13 chr15 43376018 43376730 -58003791 + MER50 LTR ERV1 1 711 -23 1566 164 164 31 chr15 43377040 43377429 -58003092 + LTR48 LTR ERV1 3 443 -344 695 149 49 26 chr15 43377444 43377658 -58002863 + LTR48 LTR ERV1 550 707 0 324 271 167 31 chr15 43378520 43378712 -58001809 + MIR SINE MIR 41 258 -4 205 244 0 0 chr15 43378862 43378903 -58001618 - L2 LINE L2 -19 3294 3254 23 0 0 0 chr15 43379445 43379468 -58001053 + AT_rich Low_complexity Low_complexity 1 23 0 31 26 0 0 chr15 43379628 43379666 -58000855 + AT_rich Low_complexity Low_complexity 1 38 0 333 267 19 38 chr15 43380237 43380342 -58000179 - MIR SINE MIR -66 142 40 199 321 125 30 chr15 43381649 43381817 -57998704 + MER5A DNA MER1_type 3 186 -3 513 0 0 0 chr15 43381889 43381946 -57998575 + (CA)n Simple_repeat Simple_repeat 1 57 0 732 319 12 16 chr15 43381951 43382199 -57998322 + MIR SINE MIR 12 258 -4 245 296 70 49 chr15 43382639 43382781 -57997740 + MIR3 SINE MIR 32 176 -32 367 285 80 0 chr15 43383095 43383246 -57997275 + MER103 DNA DNA 3 165 -1 2168 91 27 3 chr15 43384388 43384684 -57995837 + AluSc SINE Alu 1 303 -6 293 326 42 0 chr15 43385125 43385269 -57995252 - L1MC4a LINE L1 -1894 5914 5765 235 276 13 13 chr15 43386764 43386840 -57993681 + MIR SINE MIR 174 249 -13 376 191 169 74 chr15 43386933 43387122 -57993399 + MER3 DNA MER1_type 2 208 -1 * 903 144 64 43 chr15 43387122 43387170 -57993351 - MER3 DNA MER1_type -157 52 1 416 190 17 69 chr15 43387189 43387305 -57993216 + MER3 DNA MER1_type 100 209 0 22 56 0 0 chr15 43389822 43389858 -57990663 + AT_rich Low_complexity Low_complexity 1 36 0 436 271 41 60 chr15 43390523 43390789 -57989732 + L1MC4a LINE L1 5260 5520 -2288 963 184 48 14 chr15 43390789 43391101 -57989420 + MLT1A1 LTR MaLR 1 365 0 479 281 92 37 chr15 43391110 43391459 -57989062 + L1MC4a LINE L1 5525 5892 -1916 252 0 0 0 chr15 43391462 43391490 -57989031 + (TG)n Simple_repeat Simple_repeat 2 29 0 297 277 21 0 chr15 43391646 43391740 -57988781 + (TA)n Simple_repeat Simple_repeat 1 96 0 339 25 0 0 chr15 43391762 43391802 -57988719 + (CA)n Simple_repeat Simple_repeat 2 41 0 254 318 36 67 chr15 43391961 43392156 -57988365 + MIR SINE MIR 74 262 0 662 305 33 9 chr15 43392613 43392844 -57987677 - MIR SINE MIR -13 249 18 2155 247 14 43 chr15 43393591 43394146 -57986375 - MLT1H LTR MaLR -2 547 9 902 299 66 28 chr15 43394944 43395366 -57985155 + LTR33 LTR ERVL 30 467 -54 1646 202 50 17 chr15 43395455 43395871 -57984650 + Charlie4a DNA MER1_type 46 475 -33 312 143 0 0 chr15 43395897 43395953 -57984568 + (CA)n Simple_repeat Simple_repeat 1 56 0 225 296 182 30 chr15 43396655 43396787 -57983734 + L2 LINE L2 3121 3272 0 1229 27 0 0 chr15 43397918 43398066 -57982455 + L1PA2 LINE L1 6008 6155 0 35 0 0 0 chr15 43398066 43398101 -57982420 + AT_rich Low_complexity Low_complexity 1 35 0 661 255 6 35 chr15 43398263 43398446 -57982075 - MIR SINE MIR 0 262 88 292 156 0 0 chr15 43398539 43398584 -57981937 + L2 LINE L2 3267 3311 -2 2007 146 15 35 chr15 43399092 43399415 -57981106 - L1MC/D LINE L1 -716 5617 5301 2193 101 7 7 chr15 43399415 43399723 -57980798 - AluSq SINE Alu -3 310 3 2007 146 15 35 chr15 43399723 43399800 -57980721 - L1MC/D LINE L1 -1032 5301 5224 2027 211 67 2 chr15 43399843 43400279 -57980242 + MLT1C LTR MaLR 4 467 0 697 98 30 37 chr15 43401301 43401465 -57979056 + CT-rich Low_complexity Low_complexity 4 166 0 276 130 0 0 chr15 43401465 43401511 -57979010 + (CA)n Simple_repeat Simple_repeat 1 46 0 209 171 76 32 chr15 43401748 43401906 -57978615 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 * 436 190 46 11 chr15 43401788 43401962 -57978559 + (TA)n Simple_repeat Simple_repeat 1 180 0 243 0 0 0 chr15 43401983 43402033 -57978488 + (CA)n Simple_repeat Simple_repeat 1 77 0 243 0 0 0 chr15 43402033 43402060 -57978461 + (CA)n Simple_repeat Simple_repeat 2 28 0 259 179 77 39 chr15 43402779 43402857 -57977664 + L2 LINE L2 3190 3270 -2 245 293 37 0 chr15 43402868 43402950 -57977571 - MIR3 SINE MIR -9 199 115 736 187 44 16 chr15 43403786 43403968 -57976553 - MER53 DNA DNA -2 187 1 755 171 30 80 chr15 43404531 43404730 -57975791 + MER5A DNA MER1_type 1 189 0 182 208 19 0 chr15 43404977 43405030 -57975491 + CT-rich Low_complexity Low_complexity 2 55 0 4774 219 25 43 chr15 43405732 43406422 -57974099 - L1MB5 LINE L1 -9 6165 5464 270 0 0 0 chr15 43406422 43406452 -57974069 + (TG)n Simple_repeat Simple_repeat 2 31 0 4774 219 25 43 chr15 43406452 43407913 -57972608 - L1MB5 LINE L1 -710 5464 4051 1092 223 8 20 chr15 43407929 43408180 -57972341 + L1M4 LINE L1 494 741 -5801 29 0 0 0 chr15 43408215 43408244 -57972277 + AT_rich Low_complexity Low_complexity 1 29 0 5873 144 23 3 chr15 43408247 43409682 -57970839 - L1PB3 LINE L1 -5 6149 4686 938 293 98 39 chr15 43409692 43410132 -57970389 - L1M4 LINE L1 -6072 470 5 298 358 136 6 chr15 43412375 43412537 -57967984 + L2 LINE L2 3085 3267 -5 3259 135 7 30 chr15 43412847 43413386 -57967135 + MER1A DNA MER1_type 1 527 0 182 278 0 19 chr15 43413401 43413455 -57967066 + MER5B DNA MER1_type 123 175 -3 362 284 128 14 chr15 43413567 43413715 -57966806 + MIR SINE MIR 61 225 -37 242 296 169 14 chr15 43413774 43413916 -57966605 + MIR SINE MIR 99 262 0 263 345 109 0 chr15 43414223 43414342 -57966179 + MIR SINE MIR 93 224 -38 188 356 40 20 chr15 43414894 43414995 -57965526 - MIR SINE MIR -111 151 49 197 119 24 0 chr15 43415303 43415345 -57965176 + T-rich Low_complexity Low_complexity 2 44 0 373 313 50 31 chr15 43415868 43416087 -57964434 + MIR SINE MIR 20 246 -16 480 78 0 0 chr15 43416107 43416171 -57964350 - MADE1 DNA Mariner -4 76 13 23 33 0 0 chr15 43416603 43416633 -57963888 + AT_rich Low_complexity Low_complexity 1 30 0 728 250 70 29 chr15 43417731 43417975 -57962546 - L2 LINE L2 0 3313 3060 355 280 66 41 chr15 43418104 43418302 -57962219 + MIR SINE MIR 5 214 -48 656 288 28 28 chr15 43418339 43418551 -57961970 - MIR SINE MIR -38 224 13 4203 126 42 6 chr15 43418594 43419268 -57961253 - L1PA16 LINE L1 -10 6156 5459 259 314 77 52 chr15 43420000 43420325 -57960196 - LTR33 LTR ERVL -6 515 183 * 1505 205 99 48 chr15 43420323 43420737 -57959784 - MLT1D LTR MaLR -68 437 3 2096 120 0 0 chr15 43422841 43423156 -57957365 + AluSx SINE Alu 1 315 0 276 232 12 49 chr15 43423229 43423311 -57957210 - L2 LINE L2 -1 3312 3234 540 158 0 0 chr15 43424224 43424319 -57956202 + GA-rich Low_complexity Low_complexity 2 96 0 281 30 0 0 chr15 43424336 43424369 -57956152 + (GAAA)n Simple_repeat Simple_repeat 3 35 0 272 274 305 26 chr15 43425097 43425323 -57955198 - L3 LINE CR1 -50 1527 1239 857 175 6 62 chr15 43425597 43425803 -57954718 - L1M1 LINE L1 -797 5506 5318 2650 7 0 7 chr15 43425803 43426095 -57954426 - AluY SINE Alu -4 307 18 857 175 6 62 chr15 43426095 43426142 -57954379 - L1M1 LINE L1 -985 5318 5270 4920 172 17 6 chr15 43426153 43427044 -57953477 - L1MA6 LINE L1 0 6300 5400 7635 164 23 57 chr15 43427108 43428772 -57951749 - L1MA6 LINE L1 -847 5299 3692 387 285 23 12 chr15 43429720 43429875 -57950646 - L1MDb LINE L1 -1897 4509 4350 2363 94 0 0 chr15 43429875 43430174 -57950347 - AluY SINE Alu -12 299 1 387 285 23 12 chr15 43430174 43430190 -57950331 - L1MDb LINE L1 -2056 4350 4336 * 4740 209 82 52 chr15 43430176 43431105 -57949416 - L1MDb LINE L1 -3056 3350 2450 2340 189 6 73 chr15 43431105 43431655 -57948866 + MLT2B2 LTR ERVL 3 515 0 4740 209 82 52 chr15 43431655 43433937 -57946584 - L1MDb LINE L1 -3956 2450 28 246 336 31 39 chr15 43434009 43434137 -57946384 + L2 LINE L2 3158 3284 -29 1971 196 43 37 chr15 43434325 43434814 -57945707 - L1MB8 LINE L1 -1 6988 6497 * 5842 158 5 10 chr15 43434809 43435120 -57945401 + L1PA13 LINE L1 4299 4610 -1553 1922 149 65 14 chr15 43435120 43435475 -57945046 - THE1C LTR MaLR -2 373 1 5842 158 5 10 chr15 43435475 43436446 -57944075 + L1PA13 LINE L1 4610 5575 -588 3248 123 16 2 chr15 43436671 43437177 -57943344 + L1PA13 LINE L1 5632 6144 -19 887 230 14 10 chr15 43437197 43437406 -57943115 - L1MB8 LINE L1 -487 6502 6293 2681 245 22 25 chr15 43437438 43438225 -57942296 - L1MB8 LINE L1 -1992 4965 4182 * 5149 259 57 43 chr15 43438220 43439862 -57940659 - L1MB8 LINE L1 -5189 1670 6 891 291 73 40 chr15 43439861 43440429 -57940092 - HAL1b LINE L1 -650 698 109 * 548 285 146 0 chr15 43440826 43440984 -57939537 + MER5A DNA MER1_type 9 189 0 452 248 241 0 chr15 43440984 43441121 -57939400 - MER5B DNA MER1_type -8 170 1 186 378 0 22 chr15 43441786 43441876 -57938645 - L3 LINE CR1 -557 1020 933 220 234 0 0 chr15 43442367 43442414 -57938107 + T-rich Low_complexity Low_complexity 4 50 0 275 130 48 75 chr15 43442910 43443056 -57937465 + (TTATA)n Simple_repeat Simple_repeat 5 146 0 * 278 154 77 0 chr15 43442967 43443058 -57937463 + (TA)n Simple_repeat Simple_repeat 2 99 0 903 243 68 14 chr15 43443058 43443424 -57937097 - L1M4 LINE L1 -1733 4413 4028 1572 123 0 5 chr15 43443549 43443768 -57936753 + AluSq SINE Alu 1 218 -95 340 157 0 29 chr15 43444008 43444078 -57936443 - MER92C LTR ERV1 0 554 487 488 224 25 87 chr15 43444142 43444338 -57936183 - MER92C LTR ERV1 -370 184 1 306 156 13 13 chr15 43444963 43445040 -57935481 - MER31-int LTR ERV1 -489 4447 4371 512 214 141 34 chr15 43445107 43445313 -57935208 - LTR37A LTR ERV1 -198 228 1 1276 226 24 57 chr15 43445314 43445435 -57935086 - MER31-int LTR ERV1 -687 4249 4126 955 118 0 157 chr15 43445435 43445664 -57934857 + 7SK RNA RNA 1 193 0 1276 226 24 57 chr15 43445664 43445913 -57934608 - MER31-int LTR ERV1 -810 4126 3891 12688 141 14 17 chr15 43448169 43450416 -57930105 + Tigger1 DNA MER2_type 6 2246 -172 392 0 0 20 chr15 43450416 43450465 -57930056 + (TTA)n Simple_repeat Simple_repeat 3 50 0 7635 29 0 0 chr15 43450465 43454498 -57926023 - L1PA3 LINE L1 -18 6137 2017 591 254 48 0 chr15 43454498 43454663 -57925858 + Tigger1 DNA MER2_type 2244 2416 -2 281 315 91 21 chr15 43454716 43454859 -57925662 - MIR SINE MIR -108 154 2 887 282 30 22 chr15 43455053 43455418 -57925103 - L1ME3A LINE L1 -168 6002 5635 193 297 0 79 chr15 43457210 43457311 -57923210 + MIR3 SINE MIR 111 203 -5 222 105 0 0 chr15 43458069 43458107 -57922414 + (TC)n Simple_repeat Simple_repeat 2 39 0 1366 167 107 29 chr15 43459141 43459525 -57920996 - Charlie1 DNA MER1_type -5 2756 2343 495 245 38 10 chr15 43460017 43460190 -57920331 + MLT1I LTR MaLR 267 409 0 1828 169 86 51 chr15 43460618 43461027 -57919494 - MSTB LTR MaLR -3 423 1 448 307 40 7 chr15 43461242 43461392 -57919129 - MIR SINE MIR -71 191 37 189 222 0 0 chr15 43461440 43461503 -57919018 + (TGAA)n Simple_repeat Simple_repeat 1 63 0 2265 103 0 0 chr15 43461966 43462257 -57918264 + AluSg SINE Alu 18 308 -2 231 280 8 17 chr15 43463367 43463485 -57917036 + (TA)n Simple_repeat Simple_repeat 1 117 0 204 211 0 19 chr15 43464665 43464717 -57915804 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 1963 128 43 0 chr15 43467076 43467357 -57913164 - AluSg SINE Alu -17 293 1 30 0 0 0 chr15 43470013 43470043 -57910478 + AT_rich Low_complexity Low_complexity 1 30 0 585 326 141 18 chr15 43470377 43470930 -57909591 - L2 LINE L2 0 3313 2688 442 312 70 5 chr15 43471690 43471876 -57908645 - MIR SINE MIR 0 262 65 201 308 0 0 chr15 43473215 43473267 -57907254 - L2 LINE L2 -15 3257 3206 215 355 109 0 chr15 43473957 43474067 -57906454 + MIR3 SINE MIR 87 208 0 249 240 0 0 chr15 43474951 43475001 -57905520 - MIR SINE MIR -131 131 82 1480 195 58 72 chr15 43475264 43475767 -57904754 + MLT1D LTR MaLR 1 496 -9 826 318 123 17 chr15 43476184 43476533 -57903988 + L2 LINE L2 2927 3312 -1 1847 105 112 14 chr15 43477016 43477301 -57903220 + AluSq SINE Alu 1 313 0 503 291 0 28 chr15 43477897 43478038 -57902483 + MER5A DNA MER1_type 43 179 -10 2298 105 0 10 chr15 43478813 43479119 -57901402 - AluSc SINE Alu -6 303 1 2086 129 24 0 chr15 43479276 43479570 -57900951 + AluSx SINE Alu 1 301 -11 736 186 114 48 chr15 43479852 43480062 -57900459 + MIR SINE MIR 39 262 0 403 274 147 71 chr15 43481052 43481249 -57899272 + MIR SINE MIR 41 252 -10 364 229 60 0 chr15 43481900 43481981 -57898540 - MER47A DNA MER2_type 0 366 281 2191 180 23 16 chr15 43481981 43482408 -57898113 + Tigger7 DNA MER2_type 1 430 -2057 325 215 28 93 chr15 43482403 43482510 -57898011 + Tigger7 DNA MER2_type 2488 2587 0 * 1677 129 14 4 chr15 43482510 43482789 -57897732 - MER47A DNA MER2_type -84 282 1 235 267 109 20 chr15 43483500 43483601 -57896920 - MIR SINE MIR -70 192 83 874 206 69 45 chr15 43485444 43485773 -57894748 - MER33 DNA MER1_type 0 324 1 6356 191 26 45 chr15 43485792 43486393 -57894128 - L1MC1 LINE L1 0 6613 6002 183 80 0 0 chr15 43486393 43486418 -57894103 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1322 211 25 21 chr15 43486420 43486700 -57893821 - AluJo SINE Alu -31 281 1 6356 191 26 45 chr15 43486700 43487153 -57893368 - L1MC1 LINE L1 -612 6001 5541 2793 13 0 0 chr15 43487153 43487458 -57893063 + AluYa5 SINE Alu 1 305 -6 6356 191 26 45 chr15 43487458 43487690 -57892831 - L1MC1 LINE L1 -1072 5541 5306 2742 29 0 3 chr15 43487690 43488002 -57892519 - AluY SINE Alu 0 311 1 6356 191 26 45 chr15 43488002 43488930 -57891591 - L1MC1 LINE L1 -1307 5306 4472 2228 111 3 0 chr15 43488930 43489228 -57891293 - AluSx SINE Alu -13 299 1 6356 191 26 45 chr15 43489228 43490215 -57890306 - L1MC1 LINE L1 -2141 4472 3467 1731 162 51 11 chr15 43490217 43490878 -57889643 - L1MC1 LINE L1 -4457 1969 1194 23 33 0 0 chr15 43490973 43491003 -57889518 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr15 43491077 43491107 -57889414 + AT_rich Low_complexity Low_complexity 1 30 0 6374 15 0 0 chr15 43491107 43491826 -57888695 - L1PA3 LINE L1 -4 6151 5433 186 43 0 0 chr15 43491847 43491870 -57888651 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 4179 183 54 30 chr15 43491870 43492975 -57887546 - L1MC1 LINE L1 -5236 1190 24 223 321 176 18 chr15 43493017 43493182 -57887339 + L2 LINE L2 2286 2476 -838 270 320 99 77 chr15 43493368 43493811 -57886710 + L2 LINE L2 2813 3265 -7 2016 220 90 35 chr15 43494958 43495645 -57884876 - L1MC4a LINE L1 -2 7806 7082 192 152 0 0 chr15 43495823 43495856 -57884665 + (CCTA)n Simple_repeat Simple_repeat 2 34 0 788 219 42 137 chr15 43496096 43496562 -57883959 - LTR28 LTR ERV1 -141 894 5 319 207 7 29 chr15 43497459 43497599 -57882922 + (TA)n Simple_repeat Simple_repeat 2 138 0 218 217 0 0 chr15 43497613 43497659 -57882862 + (TA)n Simple_repeat Simple_repeat 1 46 0 337 264 53 24 chr15 43497670 43497878 -57882643 - L1ME4a LINE L1 -216 5905 5692 2389 77 7 0 chr15 43497997 43498307 -57882214 - AluSq SINE Alu 0 313 2 580 282 24 28 chr15 43499967 43500180 -57880341 + MIR SINE MIR 48 259 -3 365 318 103 40 chr15 43500689 43500912 -57879609 - MIR SINE MIR -6 256 20 181 327 0 18 chr15 43501165 43501220 -57879301 - MER5B DNA MER1_type -38 140 87 392 256 50 8 chr15 43501877 43501998 -57878523 - L2 LINE L2 0 3313 3188 396 256 137 30 chr15 43502494 43502662 -57877859 + MER5A DNA MER1_type 1 186 -3 428 353 131 22 chr15 43503414 43503689 -57876832 - L2 LINE L2 0 3272 2968 295 279 101 48 chr15 43504144 43504560 -57875961 + L1ME4a LINE L1 5652 6089 -32 579 237 13 39 chr15 43506449 43506605 -57873916 - L2 LINE L2 0 3313 3162 4261 169 101 18 chr15 43506615 43507474 -57873047 + MER21A LTR ERV1 1 931 0 10417 190 51 18 chr15 43507534 43510768 -57869753 + MER21A-int LTR ERV1 1189 3490 -701 2279 164 26 24 chr15 43510768 43511230 -57869291 + MER21A-int LTR ERV1 3594 4056 -135 1048 40 0 0 chr15 43511232 43511357 -57869164 + L1MA1 LINE L1 6174 6298 -4 598 124 0 0 chr15 43511401 43511490 -57869031 + MER21A-int LTR ERV1 4048 4136 -55 3511 174 111 28 chr15 43511615 43512375 -57868146 + MER21A LTR ERV1 103 925 -6 1690 174 44 0 chr15 43512423 43512716 -57867805 + AluJb SINE Alu 1 306 -6 198 167 0 0 chr15 43512716 43512752 -57867769 + GA-rich Low_complexity Low_complexity 1 36 0 670 292 88 21 chr15 43512764 43513076 -57867445 - L2 LINE L2 -189 3124 2794 2243 99 26 0 chr15 43513950 43514252 -57866269 + AluSx SINE Alu 1 310 -2 286 301 87 23 chr15 43514286 43514459 -57866062 + MIR SINE MIR 9 192 -70 25 31 0 0 chr15 43514473 43514505 -57866016 + AT_rich Low_complexity Low_complexity 1 32 0 207 0 0 0 chr15 43514867 43514890 -57865631 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 352 259 92 35 chr15 43514906 43515212 -57865309 + MER93b LTR ERV1 18 373 0 2150 127 0 7 chr15 43515550 43515849 -57864672 - AluSx SINE Alu -15 297 1 228 35 0 0 chr15 43516081 43516110 -57864411 + (TTA)n Simple_repeat Simple_repeat 3 31 0 4581 32 0 0 chr15 43516110 43516648 -57863873 - L1PA4 LINE L1 -18 6137 5600 2593 30 23 0 chr15 43516648 43517020 -57863501 + L1PA4 LINE L1 5215 5593 -562 21 36 0 0 chr15 43517025 43517053 -57863468 + AT_rich Low_complexity Low_complexity 1 28 0 1555 249 12 10 chr15 43517128 43517533 -57862988 + L1ME2 LINE L1 36 441 -5955 * 2956 225 48 32 chr15 43517531 43518541 -57861980 + L1ME2 LINE L1 4182 5208 -1007 587 245 68 47 chr15 43518549 43518827 -57861694 + L1ME2 LINE L1 5940 6223 -10 22 0 0 0 chr15 43518832 43518854 -57861667 + AT_rich Low_complexity Low_complexity 1 22 0 209 278 99 105 chr15 43519132 43519294 -57861227 + MIR3 SINE MIR 20 180 -28 21 0 0 0 chr15 43519582 43519603 -57860918 + AT_rich Low_complexity Low_complexity 1 21 0 2119 135 10 0 chr15 43519735 43520039 -57860482 - AluSx SINE Alu 0 312 6 852 228 43 21 chr15 43521042 43521275 -57859246 + MIR SINE MIR 25 262 0 577 174 0 0 chr15 43521292 43521390 -57859131 + Tigger4(Zombi) DNA MER2_type 2 99 -2632 383 0 21 0 chr15 43521510 43521557 -57858964 + (CA)n Simple_repeat Simple_repeat 1 48 0 351 0 0 0 chr15 43521556 43521595 -57858926 + (GA)n Simple_repeat Simple_repeat 2 40 0 * 191 336 109 18 chr15 43521639 43521749 -57858772 - L2 LINE L2 -212 3060 2941 200 35 35 0 chr15 43522736 43522765 -57857756 + (CAA)n Simple_repeat Simple_repeat 3 32 0 438 266 47 16 chr15 43524279 43524407 -57856114 - MIR SINE MIR -55 207 76 189 107 0 0 chr15 43525894 43525922 -57854599 + (TATG)n Simple_repeat Simple_repeat 3 30 0 280 347 78 60 chr15 43526268 43526599 -57853922 + L2 LINE L2 2936 3272 0 213 260 13 13 chr15 43526890 43526967 -57853554 + (TA)n Simple_repeat Simple_repeat 1 77 0 213 121 0 0 chr15 43527014 43527047 -57853474 + (TA)n Simple_repeat Simple_repeat 1 33 0 192 152 0 0 chr15 43527110 43527143 -57853378 + (TA)n Simple_repeat Simple_repeat 2 34 0 226 200 15 15 chr15 43527178 43527243 -57853278 + (TA)n Simple_repeat Simple_repeat 2 66 0 460 211 8 8 chr15 43527304 43527437 -57853084 + (TA)n Simple_repeat Simple_repeat 1 133 0 195 100 0 0 chr15 43529310 43529340 -57851181 + (GGA)n Simple_repeat Simple_repeat 1 30 0 2250 71 7 0 chr15 43529861 43530171 -57850350 + AluY SINE Alu 1 312 0 180 0 0 0 chr15 43530205 43530225 -57850296 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2646 69 3 0 chr15 43530283 43530633 -57849888 - MLT2A1 LTR ERVL -93 351 1 297 292 18 9 chr15 43531948 43532061 -57848460 + (TATATG)n Simple_repeat Simple_repeat 6 119 0 437 181 172 9 chr15 43532128 43532244 -57848277 + MIR SINE MIR 104 238 -24 831 231 51 5 chr15 43533175 43533370 -57847151 - MER3 DNA MER1_type -4 205 2 385 297 122 14 chr15 43534195 43534343 -57846178 + MIR3 SINE MIR 21 184 -24 330 336 23 8 chr15 43534365 43534496 -57846025 + L2 LINE L2 3138 3270 -2 197 83 28 0 chr15 43535842 43535878 -57844643 + (TAA)n Simple_repeat Simple_repeat 2 38 0 773 271 63 9 chr15 43535880 43536101 -57844420 - MIR SINE MIR -23 239 7 259 254 164 57 chr15 43536216 43536338 -57844183 - MER45A DNA AcHobo -43 135 1 1793 123 74 49 chr15 43536538 43536904 -57843617 - THE1C LTR MaLR 0 375 1 2341 96 0 0 chr15 43538387 43538680 -57841841 + AluSx SINE Alu 1 293 -19 618 101 28 0 chr15 43538680 43538789 -57841732 + GA-rich Low_complexity Low_complexity 1 112 0 354 318 87 0 chr15 43539064 43539190 -57841331 - MER91C DNA MER1_type -3 137 1 322 288 87 80 chr15 43539362 43539661 -57840860 - L2 LINE L2 -168 3104 2804 455 290 159 14 chr15 43539797 43540011 -57840510 + MIR SINE MIR 11 255 -7 21 0 0 0 chr15 43540351 43540372 -57840149 + AT_rich Low_complexity Low_complexity 1 21 0 312 188 0 0 chr15 43540480 43540544 -57839977 + (CA)n Simple_repeat Simple_repeat 2 65 0 195 42 0 0 chr15 43540544 43540568 -57839953 + (GA)n Simple_repeat Simple_repeat 2 25 0 1302 0 0 0 chr15 43541277 43541449 -57839072 - AluYa5 SINE Alu 0 309 138 767 219 124 0 chr15 43541830 43542095 -57838426 + L1ME3A LINE L1 5865 6162 -8 540 297 103 6 chr15 43542716 43542891 -57837630 - MIR SINE MIR -34 228 37 1621 202 0 0 chr15 43543060 43543347 -57837174 + AluSx SINE Alu 12 298 -14 1852 138 0 66 chr15 43543379 43543698 -57836823 + AluSx SINE Alu 1 298 -14 571 321 41 16 chr15 43544626 43544872 -57835649 - MIR SINE MIR -10 252 1 2126 130 3 0 chr15 43551031 43551332 -57829189 + AluSx SINE Alu 1 302 -10 214 282 0 56 chr15 43552411 43552482 -57828039 - L2 LINE L2 -212 3060 2994 25 31 0 0 chr15 43552543 43552575 -57827946 + AT_rich Low_complexity Low_complexity 1 32 0 2225 93 7 0 chr15 43552582 43552872 -57827649 - AluSp SINE Alu -21 292 1 2254 85 10 7 chr15 43555045 43555338 -57825183 + AluY SINE Alu 3 296 -15 2054 114 4 0 chr15 43555604 43555875 -57824646 - AluSx SINE Alu -32 280 9 383 276 81 11 chr15 43556384 43556558 -57823963 - MIR SINE MIR 0 262 77 279 0 0 0 chr15 43557632 43557663 -57822858 + (T)n Simple_repeat Simple_repeat 1 31 0 180 0 0 0 chr15 43557863 43557883 -57822638 + (T)n Simple_repeat Simple_repeat 1 20 0 21 82 0 0 chr15 43558494 43558543 -57821978 + AT_rich Low_complexity Low_complexity 1 49 0 632 309 33 31 chr15 43558688 43558946 -57821575 + MIR SINE MIR 2 255 -7 805 328 71 5 chr15 43559185 43559606 -57820915 - LTR16B LTR ERVL -10 454 6 214 320 77 0 chr15 43560069 43560147 -57820374 - MIR SINE MIR -96 166 83 527 336 58 0 chr15 43560182 43560405 -57820116 + MIR SINE MIR 21 256 -6 680 262 15 72 chr15 43560543 43560806 -57819715 + MIR SINE MIR 14 261 -1 1267 191 3 57 chr15 43561110 43561392 -57819129 + Tigger7 DNA MER2_type 1 267 -2220 366 171 146 12 chr15 43561405 43561487 -57819034 + Tigger7 DNA MER2_type 2495 2587 0 730 211 33 28 chr15 43561937 43562117 -57818404 + MIR SINE MIR 79 259 -3 359 327 212 4 chr15 43562530 43562808 -57817713 + L2 LINE L2 2418 2753 -561 294 220 100 30 chr15 43562877 43562977 -57817544 - MLT1F LTR MaLR -25 517 411 269 261 0 130 chr15 43563329 43563467 -57817054 + L2 LINE L2 2835 2954 -318 196 221 59 44 chr15 43564060 43564128 -57816393 - MIR SINE MIR -121 87 19 729 190 28 0 chr15 43564932 43565074 -57815447 - MER105 DNA DNA -7 197 52 * 1942 192 39 68 chr15 43565073 43565584 -57814937 + MLT1D LTR MaLR 10 505 0 252 194 65 16 chr15 43565584 43565641 -57814880 - MER105 DNA DNA -144 60 1 374 376 24 6 chr15 43566720 43566885 -57813636 - MIR SINE MIR -89 173 6 1562 207 29 45 chr15 43568692 43569069 -57811452 + MLT1A2 LTR MaLR 1 371 -3 2013 169 35 35 chr15 43569077 43569632 -57810889 - MLT2A2 LTR ERVL 0 554 1 408 177 10 52 chr15 43569632 43569728 -57810793 - MER45 DNA AcHobo -22 1559 1468 575 159 61 23 chr15 43569734 43569866 -57810655 - MER45 DNA AcHobo -1394 187 51 294 305 82 67 chr15 43569908 43570177 -57810344 - L2 LINE L2 -888 2426 2154 276 331 46 39 chr15 43570178 43570308 -57810213 + L2 LINE L2 3182 3312 -1 313 245 167 0 chr15 43571674 43571776 -57808745 + MIR SINE MIR 4 122 -140 386 236 81 41 chr15 43571978 43572101 -57808420 - MIR SINE MIR -107 155 28 2081 132 3 0 chr15 43573025 43573321 -57807200 + AluSx SINE Alu 1 297 -15 203 277 108 0 chr15 43573337 43573402 -57807119 - MIR SINE MIR -71 191 120 725 318 31 4 chr15 43573730 43573985 -57806536 + MIR SINE MIR 1 262 0 371 311 91 42 chr15 43574105 43574346 -57806175 - MIR SINE MIR -8 254 2 431 404 17 28 chr15 43574391 43574750 -57805771 + L2 LINE L2 2821 3175 -97 808 191 36 0 chr15 43574866 43575034 -57805487 + MER3 DNA MER1_type 2 128 -81 217 287 50 83 chr15 43575488 43575669 -57804852 + L2 LINE L2 3139 3313 0 180 295 155 111 chr15 43576259 43576601 -57803920 - L2 LINE L2 -10 3262 2906 264 313 135 24 chr15 43577113 43577321 -57803200 - MIR SINE MIR -12 250 20 347 352 102 49 chr15 43577582 43577906 -57802615 - L2 LINE L2 0 3272 2932 381 231 60 22 chr15 43579151 43579285 -57801236 + MIR SINE MIR 78 216 -46 25 0 0 0 chr15 43579341 43579366 -57801155 + AT_rich Low_complexity Low_complexity 1 25 0 1874 143 10 52 chr15 43579374 43579805 -57800716 + L1MA9 LINE L1 5933 6347 0 2122 101 10 32 chr15 43579897 43580205 -57800316 + AluSx SINE Alu 1 301 -11 210 105 0 0 chr15 43580209 43580247 -57800274 + (CAA)n Simple_repeat Simple_repeat 2 39 0 463 216 56 56 chr15 43581001 43581163 -57799358 + MIR SINE MIR 40 201 -61 228 250 0 0 chr15 43581733 43581785 -57798736 + L2 LINE L2 3143 3194 -78 230 250 52 73 chr15 43582306 43582402 -57798119 + MIR3 SINE MIR 110 203 -5 581 314 16 31 chr15 43582409 43582600 -57797921 - MIR3 SINE MIR -11 197 10 1399 175 59 31 chr15 43582813 43583099 -57797422 - AluJb SINE Alu -18 294 1 527 297 22 43 chr15 43583427 43583612 -57796909 + MER5A DNA MER1_type 4 184 -5 225 0 0 0 chr15 43583908 43583933 -57796588 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1961 95 0 0 chr15 43583933 43584185 -57796336 - AluY SINE Alu -33 278 27 22 56 0 0 chr15 43586003 43586039 -57794482 + AT_rich Low_complexity Low_complexity 1 36 0 1763 174 32 29 chr15 43586289 43586599 -57793922 - AluJo SINE Alu -1 311 1 202 296 0 0 chr15 43588308 43588362 -57792159 + CT-rich Low_complexity Low_complexity 4 57 0 345 47 0 0 chr15 43590216 43590259 -57790262 + (TG)n Simple_repeat Simple_repeat 2 44 0 993 298 26 61 chr15 43590656 43591113 -57789408 - L2 LINE L2 0 3313 2873 320 235 0 82 chr15 43591116 43591149 -57789372 - L2 LINE L2 -611 2703 2669 1937 165 58 3 chr15 43591149 43591495 -57789026 - MLT1A1 LTR MaLR 0 365 1 320 235 0 82 chr15 43591495 43591559 -57788962 - L2 LINE L2 -645 2669 2614 457 303 152 0 chr15 43591566 43591711 -57788810 - L2 LINE L2 -1734 1580 1414 3189 291 65 22 chr15 43591720 43592828 -57787693 - L2 LINE L2 -2134 1180 25 23 33 0 0 chr15 43594716 43594746 -57785775 + AT_rich Low_complexity Low_complexity 1 30 0 492 32 0 0 chr15 43594989 43595051 -57785470 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 2974 173 85 44 chr15 43597530 43598286 -57782235 - LTR48 LTR ERV1 0 787 1 768 122 0 0 chr15 43598485 43598592 -57781929 - AluSg/x SINE Alu -10 300 194 599 241 15 15 chr15 43598985 43599118 -57781403 - FLAM_A SINE Alu 0 133 1 180 304 0 0 chr15 43600429 43600475 -57780046 + MIR SINE MIR 72 117 -145 1557 181 34 24 chr15 43601301 43601594 -57778927 + AluSx SINE Alu 1 296 -16 569 153 21 21 chr15 43601725 43601869 -57778652 + GA-rich Low_complexity Low_complexity 1 144 0 374 283 147 8 chr15 43602004 43602161 -57778360 + MIR SINE MIR 21 192 -57 27 29 0 0 chr15 43602558 43602592 -57777929 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr15 43603286 43603309 -57777212 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr15 43604078 43604111 -57776410 + AT_rich Low_complexity Low_complexity 1 33 0 233 245 0 53 chr15 43605301 43605395 -57775126 + L1MC4 LINE L1 6615 6703 -1339 201 161 0 0 chr15 43605403 43605434 -57775087 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 266 229 86 0 chr15 43605835 43605905 -57774616 - L2 LINE L2 -1 3271 3196 29 0 0 0 chr15 43606141 43606170 -57774351 + AT_rich Low_complexity Low_complexity 1 29 0 2242 125 0 0 chr15 43608924 43609228 -57771293 + AluSq SINE Alu 1 304 -9 27 49 0 0 chr15 43609329 43609370 -57771151 + AT_rich Low_complexity Low_complexity 1 41 0 1604 190 32 42 chr15 43609465 43609775 -57770746 + AluJb SINE Alu 1 307 -5 349 176 12 12 chr15 43609785 43609870 -57770651 + GA-rich Low_complexity Low_complexity 5 89 0 224 231 0 46 chr15 43610169 43610234 -57770287 + G-rich Low_complexity Low_complexity 2 63 0 1790 301 108 10 chr15 43611158 43612066 -57768455 + L2 LINE L2 2310 3313 0 723 271 128 40 chr15 43616287 43616835 -57763686 + MLT1G LTR MaLR 1 553 -2 22 0 0 0 chr15 43617771 43617793 -57762728 + AT_rich Low_complexity Low_complexity 1 22 0 2369 178 52 5 chr15 43617798 43618498 -57762023 - LTR1B LTR ERV1 -54 772 1 3401 189 41 53 chr15 43620362 43621170 -57759351 + MER21B LTR ERV1 66 863 0 198 186 23 0 chr15 43621654 43621697 -57758824 + L2 LINE L2 3267 3310 -3 254 194 102 41 chr15 43622294 43622392 -57758129 + Charlie7 DNA MER1_type 46 149 -2463 225 245 119 70 chr15 43623857 43624000 -57756521 - MIR3 SINE MIR -8 200 51 343 321 19 9 chr15 43624908 43625014 -57755507 + L1ME1 LINE L1 5963 6069 -97 261 206 0 0 chr15 43625015 43625078 -57755443 + L1MB8 LINE L1 6107 6169 -9 403 304 61 37 chr15 43625470 43625684 -57754837 + MIR SINE MIR 19 235 -27 23 0 0 0 chr15 43625769 43625792 -57754729 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr15 43626380 43626412 -57754109 + AT_rich Low_complexity Low_complexity 1 32 0 252 0 0 0 chr15 43627742 43627770 -57752751 + (CA)n Simple_repeat Simple_repeat 1 28 0 646 309 57 4 chr15 43627987 43628217 -57752304 + MIR SINE MIR 13 254 -8 240 35 0 0 chr15 43628218 43628247 -57752274 + (TTA)n Simple_repeat Simple_repeat 1 29 0 563 250 7 33 chr15 43628900 43629052 -57751469 + MER69 DNA AcHobo 1 148 -2378 236 258 30 0 chr15 43629167 43629233 -57751288 - MIR SINE MIR -15 247 180 986 187 109 7 chr15 43629403 43629686 -57750835 + Charlie4a DNA MER1_type 16 327 -181 3112 262 89 25 chr15 43629709 43631395 -57749126 + L1MEc LINE L1 37 1913 -4483 1551 270 33 5 chr15 43631408 43632049 -57748472 + L1MEc LINE L1 2598 3256 -2959 1259 227 23 132 chr15 43632056 43632571 -57747950 + MLT1E LTR MaLR 1 459 -134 290 266 89 103 chr15 43632586 43632800 -57747721 - L2 LINE L2 -802 2512 2302 659 300 66 53 chr15 43634081 43634615 -57745906 + L2 LINE L2 2781 3311 -2 27 0 0 0 chr15 43634708 43634735 -57745786 + AT_rich Low_complexity Low_complexity 1 27 0 199 208 75 0 chr15 43635466 43635519 -57745002 + L2 LINE L2 3205 3261 -11 1194 205 108 55 chr15 43636826 43637299 -57743222 - MLT1D LTR MaLR 0 505 8 200 310 60 20 chr15 43637305 43637405 -57743116 + MIR SINE MIR 85 188 -74 230 250 0 0 chr15 43638231 43638275 -57742246 + L2 LINE L2 3252 3295 -18 204 250 0 0 chr15 43638299 43638343 -57742178 + L2 LINE L2 3219 3262 -10 2036 127 138 5 chr15 43638631 43639009 -57741512 + MSTA LTR MaLR 1 428 0 3951 157 17 39 chr15 43639148 43639870 -57740651 - L1MA9 LINE L1 0 6312 5609 1853 163 0 13 chr15 43639870 43640171 -57740350 - AluSx SINE Alu -15 297 1 3951 157 17 39 chr15 43640171 43640270 -57740251 - L1MA9 LINE L1 -703 5609 5509 207 258 23 109 chr15 43641000 43641128 -57739393 + MIR SINE MIR 65 181 -81 243 103 0 0 chr15 43641306 43641345 -57739176 + (TG)n Simple_repeat Simple_repeat 2 40 0 738 199 0 7 chr15 43642258 43642404 -57738117 - MER97c DNA MER1_type? -911 179 35 429 109 0 0 chr15 43642442 43642506 -57738015 + (TG)n Simple_repeat Simple_repeat 2 65 0 277 319 52 26 chr15 43642750 43642866 -57737655 - L2 LINE L2 -2 3311 3193 413 248 204 8 chr15 43643129 43643379 -57737142 + MER113 DNA MER1_type? 187 485 -36 276 30 0 0 chr15 43645042 43645075 -57735446 + (TC)n Simple_repeat Simple_repeat 1 33 0 * 387 0 0 0 chr15 43645074 43645117 -57735404 + (CA)n Simple_repeat Simple_repeat 1 43 0 234 227 30 15 chr15 43645117 43645183 -57735338 + GA-rich Low_complexity Low_complexity 1 67 0 213 304 27 80 chr15 43645437 43645549 -57734972 - MIR SINE MIR -81 127 22 483 263 32 13 chr15 43648111 43648267 -57732254 + MLT1I LTR MaLR 244 402 -7 468 286 141 5 chr15 43648367 43648566 -57731955 - MIR SINE MIR -9 253 28 2410 113 0 24 chr15 43651875 43652248 -57728273 - THE1B LTR MaLR 0 364 1 1703 190 37 0 chr15 43653005 43653300 -57727221 - AluJo SINE Alu -6 306 1 191 441 38 25 chr15 43653305 43653625 -57726896 + L2 LINE L2 2554 2877 -437 344 346 71 82 chr15 43653986 43654266 -57726255 + L2 LINE L2 2977 3253 -19 247 286 116 0 chr15 43655514 43655626 -57724895 - MER117 DNA MER1_type -43 154 30 376 282 8 89 chr15 43656034 43656282 -57724239 - L2 LINE L2 -9 3304 3077 183 253 247 34 chr15 43660081 43660227 -57720294 - L2 LINE L2 -2 3311 3135 226 333 0 0 chr15 43660553 43660634 -57719887 + (TATATG)n Simple_repeat Simple_repeat 4 84 0 245 259 76 68 chr15 43660636 43660872 -57719649 - L1ME4a LINE L1 -158 5963 5726 23 68 0 0 chr15 43660996 43661040 -57719481 + AT_rich Low_complexity Low_complexity 1 44 0 373 319 64 19 chr15 43661117 43661274 -57719247 - L1ME4a LINE L1 -1227 4919 4756 226 226 66 80 chr15 43661527 43661664 -57718857 - L1MC/D LINE L1 -1898 5910 5776 456 297 48 37 chr15 43661781 43662081 -57718440 - L2 LINE L2 -254 3018 2719 1095 242 80 47 chr15 43662083 43662533 -57717988 + MLT1C LTR MaLR 1 465 -2 254 286 10 82 chr15 43662572 43662670 -57717851 - L2 LINE L2 -8 3305 3215 2320 92 0 0 chr15 43662800 43663094 -57717427 - AluSx SINE Alu -18 294 1 346 282 84 14 chr15 43663259 43663401 -57717120 + L2 LINE L2 3147 3298 -15 677 308 21 39 chr15 43663441 43663508 -57717013 + L1ME3A LINE L1 5132 5199 -963 2151 110 0 3 chr15 43663508 43663790 -57716731 + AluSg SINE Alu 3 283 -27 677 308 21 39 chr15 43663790 43664234 -57716287 + L1ME3A LINE L1 5199 5635 -527 469 288 21 30 chr15 43664363 43664599 -57715922 + L1ME3A LINE L1 5718 5951 -219 463 316 165 5 chr15 43666757 43666975 -57713546 - MIR SINE MIR -8 254 2 441 0 0 0 chr15 43667884 43667933 -57712588 + (TA)n Simple_repeat Simple_repeat 1 49 0 270 0 0 0 chr15 43667943 43667973 -57712548 + (CA)n Simple_repeat Simple_repeat 2 31 0 307 357 83 10 chr15 43672176 43672369 -57708152 - MIR SINE MIR -12 250 45 36 0 0 0 chr15 43673527 43673563 -57706958 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr15 43673628 43673651 -57706870 + AT_rich Low_complexity Low_complexity 1 23 0 226 365 37 19 chr15 43673721 43673828 -57706693 - MER5A DNA MER1_type -15 174 66 228 35 0 0 chr15 43674995 43675024 -57705497 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 270 56 0 0 chr15 43676832 43676868 -57703653 + (CA)n Simple_repeat Simple_repeat 1 36 0 214 276 13 40 chr15 43678348 43678424 -57702097 + MIR SINE MIR 29 102 -106 387 279 65 10 chr15 43678612 43678813 -57701708 + L1MC4 LINE L1 7692 7903 -139 305 231 7 84 chr15 43678853 43678996 -57701525 + L1MC4 LINE L1 7908 8039 -3 372 22 0 0 chr15 43679730 43679775 -57700746 + (CA)n Simple_repeat Simple_repeat 2 46 0 189 235 0 0 chr15 43681710 43681744 -57698777 + MIR SINE MIR 214 247 -15 186 103 0 0 chr15 43681749 43681778 -57698743 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 707 268 93 5 chr15 43681869 43682074 -57698447 + MIR SINE MIR 7 229 -33 690 244 99 0 chr15 43682888 43683060 -57697461 + MER5A DNA MER1_type 1 189 0 2186 153 3 12 chr15 43683216 43683556 -57696965 + MER1B DNA MER1_type 1 337 0 402 383 18 6 chr15 43684502 43684669 -57695852 - MIR3 SINE MIR -38 170 2 272 299 16 110 chr15 43685330 43685457 -57695064 + MER91C DNA MER1_type 24 138 -2 30 0 0 0 chr15 43686407 43686437 -57694084 + AT_rich Low_complexity Low_complexity 1 30 0 1427 258 71 112 chr15 43687396 43688646 -57691875 + L2 LINE L2 2118 3313 0 198 71 0 0 chr15 43690518 43690546 -57689975 + (TG)n Simple_repeat Simple_repeat 2 29 0 1816 176 87 0 chr15 43691540 43691886 -57688635 - Tigger3b DNA MER2_type 0 1232 857 1273 109 15 10 chr15 43691884 43692085 -57688436 - Tigger3b DNA MER2_type -736 495 294 * 1157 99 0 13 chr15 43692085 43692237 -57688284 + AluSq/x SINE Alu 1 150 -163 1500 197 20 0 chr15 43692279 43692579 -57687942 - Tigger3b DNA MER2_type -925 306 1 302 309 63 16 chr15 43694549 43694675 -57685846 + L2 LINE L2 3182 3313 0 2551 53 0 0 chr15 43694846 43695147 -57685374 + AluY SINE Alu 1 301 -10 246 393 29 21 chr15 43695499 43695639 -57684882 + L2 LINE L2 3088 3228 -44 595 276 12 6 chr15 43695916 43696086 -57684435 - LTR33 LTR ERVL -4 517 347 386 266 65 49 chr15 43696185 43696369 -57684152 - LTR33 LTR ERVL -303 218 32 215 216 0 20 chr15 43698620 43698671 -57681850 + CT-rich Low_complexity Low_complexity 5 54 0 184 374 30 20 chr15 43698795 43698894 -57681627 + L3 LINE CR1 1476 1575 -2 196 50 0 50 chr15 43699015 43699055 -57681466 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2313 84 0 7 chr15 43699883 43700179 -57680342 - AluSg SINE Alu -16 294 1 536 231 94 6 chr15 43701757 43701917 -57678604 - MLT1J LTR MaLR -251 260 87 1077 188 50 0 chr15 43701941 43702180 -57678341 - Tigger2 DNA MER2_type -12 2706 2456 * 1822 117 22 6 chr15 43702179 43702495 -57678026 - Tigger2 DNA MER2_type -118 2600 2280 414 91 0 104 chr15 43702493 43702570 -57677951 - Tigger2 DNA MER2_type -2649 69 1 * 798 275 18 18 chr15 43703905 43704134 -57676387 + MIR SINE MIR 34 262 0 248 74 481 0 chr15 43705070 43705124 -57675397 + MADE1 DNA Mariner 1 80 0 183 100 0 0 chr15 43706094 43706124 -57674397 + (ATG)n Simple_repeat Simple_repeat 3 32 0 1885 127 34 17 chr15 43707334 43707626 -57672895 - AluSx SINE Alu -15 297 1 23 33 0 0 chr15 43707669 43707699 -57672822 + AT_rich Low_complexity Low_complexity 1 30 0 242 138 52 0 chr15 43708211 43708269 -57672252 + A-rich Low_complexity Low_complexity 6 66 0 690 239 46 46 chr15 43708353 43708592 -57671929 - MIR SINE MIR -15 247 9 180 373 45 0 chr15 43711397 43711464 -57669057 + L2 LINE L2 3239 3308 -5 186 71 0 0 chr15 43712550 43712578 -57667943 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1947 85 8 0 chr15 43712580 43712828 -57667693 - AluSc SINE Alu -21 288 39 228 35 0 0 chr15 43713188 43713217 -57667304 + (TG)n Simple_repeat Simple_repeat 2 30 0 228 344 68 47 chr15 43713901 43714093 -57666428 - L2 LINE L2 -210 3062 2867 197 167 67 67 chr15 43714236 43714296 -57666225 - L2 LINE L2 -81 3232 3173 471 309 58 70 chr15 43716058 43716317 -57664204 + L2 LINE L2 3012 3267 -5 313 310 66 71 chr15 43716343 43716376 -57664145 + MIR3 SINE MIR 4 36 -172 2417 118 22 0 chr15 43716376 43716732 -57663789 + THE1B LTR MaLR 1 364 0 313 310 66 71 chr15 43716732 43716895 -57663626 + MIR3 SINE MIR 36 199 -9 21 0 0 0 chr15 43717235 43717256 -57663265 + AT_rich Low_complexity Low_complexity 1 21 0 208 373 0 0 chr15 43717556 43717623 -57662898 - L2 LINE L2 -23 3290 3224 189 348 27 45 chr15 43719420 43719532 -57660989 - MIR SINE MIR -62 146 37 201 195 0 0 chr15 43721860 43721901 -57658620 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 243 0 0 0 chr15 43724817 43724844 -57655677 + (TG)n Simple_repeat Simple_repeat 2 28 0 660 309 48 35 chr15 43725031 43725429 -57655092 + L1ME4a LINE L1 5524 5926 -195 243 203 0 0 chr15 43725608 43725667 -57654854 + (TG)n Simple_repeat Simple_repeat 2 60 0 297 0 0 0 chr15 43725669 43725702 -57654819 + (CA)n Simple_repeat Simple_repeat 2 34 0 789 101 0 0 chr15 43725924 43726063 -57654458 + (TA)n Simple_repeat Simple_repeat 1 139 0 1978 116 11 11 chr15 43726063 43726347 -57654174 - AluSx SINE Alu -28 284 1 208 337 56 0 chr15 43727054 43727143 -57653378 + L3 LINE CR1 1074 1167 -410 544 302 74 21 chr15 43727157 43727399 -57653122 - MIR SINE MIR -6 256 2 475 281 79 37 chr15 43728712 43728876 -57651645 - MER5A DNA MER1_type -12 177 7 243 224 0 0 chr15 43729460 43729518 -57651003 - L1ME4a LINE L1 -199 5922 5865 180 318 0 0 chr15 43729618 43729662 -57650859 - L2 LINE L2 -25 3247 3204 316 331 69 0 chr15 43730056 43730201 -57650320 + MIR SINE MIR 73 227 -35 266 349 18 0 chr15 43731217 43731326 -57649195 + MIR3 SINE MIR 93 203 -5 467 310 37 29 chr15 43732363 43732608 -57647913 + L1ME1 LINE L1 1 247 -6612 1972 245 76 32 chr15 43733139 43733783 -57646738 + L1ME1 LINE L1 1206 1898 -5061 1388 194 148 17 chr15 43733783 43734196 -57646325 + MLT1C LTR MaLR 1 467 0 1972 245 76 32 chr15 43734196 43734688 -57645833 + L1ME1 LINE L1 1898 2367 -4592 25 75 0 0 chr15 43734703 43734756 -57645765 + AT_rich Low_complexity Low_complexity 1 53 0 28 61 0 0 chr15 43734872 43734921 -57645600 + AT_rich Low_complexity Low_complexity 1 49 0 2421 229 71 27 chr15 43735092 43736459 -57644062 + L1ME1 LINE L1 5433 6936 -41 268 258 93 0 chr15 43737446 43737543 -57642978 + MIR SINE MIR 49 154 -108 803 193 57 70 chr15 43737557 43737777 -57642744 + MER46C DNA MER2_type 2 218 -120 1242 209 154 138 chr15 43737777 43738669 -57641852 + LTR1B LTR ERV1 1 1020 0 400 272 9 0 chr15 43738676 43738790 -57641731 + MER46C DNA MER2_type 222 336 -2 261 235 13 180 chr15 43739191 43739352 -57641169 + MIR SINE MIR 74 208 0 471 340 46 5 chr15 43739787 43739981 -57640540 + MIR SINE MIR 57 258 -4 404 344 113 31 chr15 43740584 43740974 -57639547 + L2 LINE L2 2892 3313 0 186 143 0 0 chr15 43740974 43741009 -57639512 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 325 296 89 17 chr15 43741019 43741310 -57639211 + L1ME LINE L1 5301 5612 -558 264 83 0 117 chr15 43741326 43741386 -57639135 - MADE1 DNA Mariner -27 53 1 307 349 59 20 chr15 43741432 43741584 -57638937 + L1ME LINE L1 5695 5852 -310 180 0 0 0 chr15 43741633 43741653 -57638868 + (CATTA)n Simple_repeat Simple_repeat 1 20 0 180 135 0 0 chr15 43742012 43742049 -57638472 + (TTA)n Simple_repeat Simple_repeat 3 39 0 2211 102 0 3 chr15 43742922 43743217 -57637304 + AluSx SINE Alu 1 294 -18 203 59 0 29 chr15 43744964 43744998 -57635523 + (TG)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr15 43745443 43745466 -57635055 + AT_rich Low_complexity Low_complexity 1 23 0 221 241 19 0 chr15 43745774 43745828 -57634693 + (CA)n Simple_repeat Simple_repeat 1 55 0 31 0 0 0 chr15 43745910 43745941 -57634580 + AT_rich Low_complexity Low_complexity 1 31 0 243 342 105 0 chr15 43745955 43746069 -57634452 - L2 LINE L2 0 3313 3188 27 0 0 0 chr15 43746090 43746117 -57634404 + AT_rich Low_complexity Low_complexity 1 27 0 255 339 139 9 chr15 43747220 43747335 -57633186 + MIR SINE MIR 31 160 -102 2082 124 0 0 chr15 43748597 43748887 -57631634 + AluY SINE Alu 17 306 -5 198 302 0 16 chr15 43749827 43749890 -57630631 + MIR3 SINE MIR 147 208 0 615 314 88 7 chr15 43751171 43751425 -57629096 - MIR SINE MIR 0 262 10 189 283 33 33 chr15 43752284 43752344 -57628177 - MER5A DNA MER1_type -64 125 66 2386 96 0 0 chr15 43752344 43752645 -57627876 - AluSx SINE Alu -11 301 1 585 200 67 7 chr15 43753837 43753972 -57626549 - L2 LINE L2 0 3313 3171 610 274 86 65 chr15 43754558 43754985 -57625536 - L2 LINE L2 -134 3179 2736 232 254 16 0 chr15 43755004 43755067 -57625454 - MIR SINE MIR -58 150 87 328 292 42 17 chr15 43756198 43756318 -57624203 - L2 LINE L2 0 3313 3191 366 322 38 44 chr15 43756342 43756525 -57623996 + MER5A DNA MER1_type 8 189 0 194 259 58 101 chr15 43757245 43757368 -57623153 + L2 LINE L2 3181 3299 -14 2035 123 0 0 chr15 43757368 43757644 -57622877 + AluSq SINE Alu 25 300 -13 194 259 58 101 chr15 43757644 43757659 -57622862 + L2 LINE L2 3299 3313 0 198 250 19 19 chr15 43758089 43758141 -57622380 + L3 LINE CR1 1524 1575 -2 421 282 80 31 chr15 43758903 43759066 -57621455 - MIR SINE MIR 0 262 92 715 209 99 6 chr15 43760777 43760949 -57619572 - MER58A DNA MER1_type -3 221 34 1134 149 27 40 chr15 43762047 43762269 -57618252 + MER20 DNA MER1_type 1 219 0 364 307 39 0 chr15 43762921 43763048 -57617473 - L2 LINE L2 -1371 1943 1812 302 219 114 18 chr15 43763052 43763166 -57617355 - MLT1H1 LTR MaLR -2 553 429 1531 193 47 99 chr15 43763182 43763272 -57617249 + MLT1C LTR MaLR 6 99 -368 3883 49 0 0 chr15 43763272 43763744 -57616777 + L1PA6 LINE L1 5681 6152 -2 1531 193 47 99 chr15 43763744 43764140 -57616381 + MLT1C LTR MaLR 99 467 0 458 226 70 75 chr15 43764140 43764190 -57616331 - MLT1H1 LTR MaLR -131 411 362 1299 212 34 69 chr15 43764190 43764568 -57615953 - MLT1A1 LTR MaLR 0 365 1 458 226 70 75 chr15 43764568 43764814 -57615707 - MLT1H1 LTR MaLR -180 362 129 191 317 31 114 chr15 43764827 43765152 -57615369 - L2 LINE L2 -1738 1576 1279 2456 77 0 6 chr15 43766326 43766639 -57613882 + AluY SINE Alu 1 311 0 2544 148 39 2 chr15 43766820 43767233 -57613288 - MSTA LTR MaLR 0 428 1 356 328 25 102 chr15 43767844 43768088 -57612433 - L2 LINE L2 -91 3181 2957 3080 188 21 20 chr15 43768373 43769071 -57611450 - L1MA7 LINE L1 -2092 4054 3356 * 5745 167 51 14 chr15 43769070 43771048 -57609473 + L1MA7 LINE L1 4067 6236 -55 193 57 57 0 chr15 43771048 43771083 -57609438 + (TA)n Simple_repeat Simple_repeat 1 37 0 5745 167 51 14 chr15 43771083 43771142 -57609379 + L1MA7 LINE L1 6236 6291 0 21 36 0 0 chr15 43771142 43771170 -57609351 + AT_rich Low_complexity Low_complexity 1 28 0 216 345 23 23 chr15 43771785 43771872 -57608649 + MIR3 SINE MIR 101 187 -21 277 310 64 70 chr15 43772193 43772380 -57608141 + MER5A DNA MER1_type 3 188 -1 207 0 0 0 chr15 43773734 43773757 -57606764 + (CAA)n Simple_repeat Simple_repeat 2 24 0 366 91 0 0 chr15 43774280 43774335 -57606186 + (GA)n Simple_repeat Simple_repeat 2 56 0 314 319 42 28 chr15 43776757 43776901 -57603620 + MIR3 SINE MIR 6 151 -57 1884 93 0 56 chr15 43778070 43778339 -57602182 - AluY SINE Alu -57 254 1 1276 235 75 8 chr15 43778343 43778705 -57601816 - MLT1F1 LTR MaLR 0 567 182 2120 215 54 57 chr15 43778765 43779431 -57601090 - MER21B LTR ERV1 -122 741 78 884 204 0 6 chr15 43779805 43779972 -57600549 - MLT1F1 LTR MaLR -372 170 5 356 348 82 11 chr15 43780632 43780816 -57599705 - MIR3 SINE MIR -10 198 2 432 104 0 0 chr15 43784475 43784542 -57595979 + (CA)n Simple_repeat Simple_repeat 2 68 0 396 261 213 46 chr15 43784636 43784965 -57595556 + L1ME4a LINE L1 5736 6119 -2 181 211 118 26 chr15 43785947 43786023 -57594498 + L2 LINE L2 3230 3312 -1 28 0 0 0 chr15 43786083 43786111 -57594410 + AT_rich Low_complexity Low_complexity 1 28 0 472 333 25 10 chr15 43786661 43786865 -57593656 - L2 LINE L2 -3 3310 3104 2196 52 39 52 chr15 43786971 43787277 -57593244 - AluY SINE Alu -9 302 1 630 264 24 6 chr15 43788081 43788248 -57592273 + MIR SINE MIR 29 198 -64 181 216 0 39 chr15 43788299 43788350 -57592171 - L2 LINE L2 -1 3312 3264 21 36 0 0 chr15 43788506 43788534 -57591987 + AT_rich Low_complexity Low_complexity 1 28 0 1048 149 40 0 chr15 43788542 43788743 -57591778 - MER2 DNA MER2_type -135 210 2 2230 112 0 20 chr15 43789495 43789800 -57590721 - AluSc SINE Alu -10 299 1 599 230 113 31 chr15 43790967 43791189 -57589332 + MIR SINE MIR 23 262 0 211 179 90 60 chr15 43791414 43791481 -57589040 + MIR SINE MIR 83 151 -111 263 256 49 0 chr15 43792137 43792219 -57588302 + MIR SINE MIR 120 205 -57 776 158 60 27 chr15 43792860 43793043 -57587478 + MER5A DNA MER1_type 1 189 0 266 309 67 47 chr15 43793380 43793529 -57586992 - L3 LINE CR1 -475 1102 951 261 83 0 0 chr15 43794024 43794060 -57586461 + (TA)n Simple_repeat Simple_repeat 2 37 0 185 277 48 24 chr15 43794876 43794959 -57585562 + MIR SINE MIR 39 123 -139 369 372 33 28 chr15 43795022 43795237 -57585284 + MIR SINE MIR 47 262 0 566 305 42 8 chr15 43795880 43796119 -57584402 - LTR16A1 LTR ERVL -2 455 209 502 220 53 15 chr15 43796643 43796775 -57583746 - MIR SINE MIR -10 252 116 304 376 44 17 chr15 43796839 43797020 -57583501 + L3 LINE CR1 248 433 -1144 364 336 83 43 chr15 43797165 43797613 -57582908 + L2 LINE L2 2642 3095 -177 246 356 95 30 chr15 43797772 43798067 -57582454 + L3 LINE CR1 667 980 -597 1118 141 61 50 chr15 43798785 43798983 -57581538 + AluJb SINE Alu 1 200 -112 228 35 0 0 chr15 43799023 43799052 -57581469 + (TAA)n Simple_repeat Simple_repeat 2 30 0 237 211 101 18 chr15 43799070 43799179 -57581342 - Charlie7 DNA MER1_type -55 2557 2440 233 276 31 10 chr15 43799173 43799271 -57581250 - Charlie7 DNA MER1_type -2508 104 5 * 473 313 72 10 chr15 43800735 43800930 -57579591 + MIR SINE MIR 46 252 -10 5220 243 104 43 chr15 43800948 43802762 -57577759 - L1MD2 LINE L1 -3 6750 5047 4450 158 45 9 chr15 43802762 43803622 -57576899 - L1MA4A LINE L1 0 6303 5413 5220 243 104 43 chr15 43803622 43804719 -57575802 - L1MD2 LINE L1 -1706 5047 4018 1042 199 168 65 chr15 43804719 43805177 -57575344 + MLT1D LTR MaLR 1 505 0 5220 243 104 43 chr15 43805177 43807470 -57573051 - L1MD2 LINE L1 -2735 4018 1118 247 252 41 88 chr15 43807670 43807817 -57572704 - L1MD2 LINE L1 -5912 628 489 635 286 50 40 chr15 43808023 43808490 -57572031 - L1MDa LINE L1 -5555 985 122 731 253 135 32 chr15 43808493 43808872 -57571649 - MER74B LTR ERVL -139 483 66 557 234 42 24 chr15 43808883 43809050 -57571471 + MER21B LTR ERV1 581 750 -113 24 0 0 0 chr15 43809287 43809311 -57571210 + AT_rich Low_complexity Low_complexity 1 24 0 386 242 16 36 chr15 43809422 43809552 -57570969 + L1ME1 LINE L1 5991 6139 -56 4022 161 13 10 chr15 43812515 43813302 -57567219 + L1MC3 LINE L1 6802 7590 -195 815 170 72 5 chr15 43813306 43813500 -57567021 + L1MC2 LINE L1 6137 6343 -1 231 103 0 0 chr15 43814729 43814768 -57565753 + (TC)n Simple_repeat Simple_repeat 2 40 0 353 257 0 0 chr15 43815318 43815388 -57565133 + L2 LINE L2 3240 3309 -4 393 293 24 0 chr15 43815573 43815696 -57564825 - MIR3 SINE MIR -1 207 82 188 313 76 83 chr15 43815844 43815988 -57564533 - L2 LINE L2 -86 3186 3044 213 269 0 0 chr15 43816274 43816352 -57564169 + (CAGAGA)n Simple_repeat Simple_repeat 4 81 0 361 301 187 0 chr15 43816796 43816919 -57563602 - MER5A DNA MER1_type -6 183 38 2303 129 13 3 chr15 43816953 43817332 -57563189 - L1MA5 LINE L1 -6 6294 5912 217 174 22 43 chr15 43817383 43817429 -57563092 + MER5B DNA MER1_type 35 79 -99 1034 204 121 44 chr15 43817781 43818120 -57562401 + MLT1A1 LTR MaLR 1 365 0 4308 170 30 7 chr15 43818847 43819669 -57560852 - MER21B LTR ERV1 -22 841 1 4165 142 115 21 chr15 43821478 43821809 -57558712 + MER6 DNA MER2_type 1 300 -565 243 0 0 0 chr15 43821809 43821836 -57558685 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 4165 142 115 21 chr15 43821836 43822295 -57558226 + MER6 DNA MER2_type 300 865 0 234 217 50 0 chr15 43822296 43822356 -57558165 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 968 179 0 0 chr15 43822825 43822981 -57557540 + FAM SINE Alu 1 156 -19 252 200 0 0 chr15 43822981 43823036 -57557485 + GA-rich Low_complexity Low_complexity 2 56 0 308 269 41 8 chr15 43823372 43823544 -57556977 - MIR SINE MIR -4 258 45 205 321 57 70 chr15 43823936 43824151 -57556370 - MIR SINE MIR -41 167 3 1678 185 21 3 chr15 43824459 43824745 -57555776 + AluJo SINE Alu 3 293 -19 411 284 18 0 chr15 43827237 43827346 -57553175 - L2 LINE L2 -8 3264 3154 2148 143 36 52 chr15 43827553 43827841 -57552680 - Tigger2a DNA MER2_type -2274 434 154 2211 194 7 21 chr15 43827841 43828273 -57552248 + MSTB LTR MaLR 1 426 0 2148 143 36 52 chr15 43828273 43828425 -57552096 - Tigger2a DNA MER2_type -2554 154 1 550 250 39 50 chr15 43828524 43828704 -57551817 - MER5B DNA MER1_type 0 178 1 211 256 0 0 chr15 43829041 43829084 -57551437 + MIR SINE MIR 110 152 -110 3250 201 41 2 chr15 43829100 43829728 -57550793 - MER82 DNA MER2_type 0 653 1 21 0 0 0 chr15 43829819 43829840 -57550681 + AT_rich Low_complexity Low_complexity 1 21 0 2548 65 3 0 chr15 43831046 43831355 -57549166 - AluY SINE Alu 0 311 2 298 206 0 14 chr15 43831746 43831819 -57548702 - HsTC2 DNA Tc2 -1820 78 7 216 184 0 0 chr15 43832145 43832194 -57548327 + (CA)n Simple_repeat Simple_repeat 1 49 0 420 328 152 37 chr15 43832194 43833039 -57547482 + L1MC4a LINE L1 4349 5290 -856 244 290 171 0 chr15 43833049 43833225 -57547296 + L1MC4a LINE L1 5323 5528 -2280 256 271 43 87 chr15 43833597 43833804 -57546717 + L1MC4a LINE L1 5714 5911 -1897 279 0 0 0 chr15 43836174 43836205 -57544316 + (CA)n Simple_repeat Simple_repeat 1 31 0 362 343 34 27 chr15 43837146 43837292 -57543229 - MIR3 SINE MIR -46 162 16 210 254 0 36 chr15 43837661 43837716 -57542805 - L2 LINE L2 -16 3297 3245 225 316 0 20 chr15 43838627 43838725 -57541796 + T-rich Low_complexity Low_complexity 4 99 0 2324 108 0 0 chr15 43838846 43839142 -57541379 + AluSx SINE Alu 3 298 -14 1400 261 19 5 chr15 43840194 43840565 -57539956 + MLT1G LTR MaLR 214 589 -1 1563 175 144 3 chr15 43840832 43841152 -57539369 - MLT1A1 LTR MaLR 0 365 1 356 234 101 62 chr15 43842263 43842490 -57538031 - L1MC4 LINE L1 0 8042 7807 336 321 82 15 chr15 43842630 43842764 -57537757 + L2 LINE L2 3127 3269 -3 230 296 174 31 chr15 43843270 43843466 -57537055 + L2 LINE L2 2872 3095 -177 246 264 19 47 chr15 43845281 43845387 -57535134 - MIR SINE MIR 0 262 160 645 233 119 0 chr15 43845388 43845564 -57534957 - MIR SINE MIR -64 198 2 1736 186 55 42 chr15 43848529 43848911 -57531610 + MLT1B LTR MaLR 1 387 -3 806 253 118 53 chr15 43849105 43849595 -57530926 + LTR33A LTR ERVL 2 523 0 322 260 31 10 chr15 43849734 43849830 -57530691 - MLT1J LTR MaLR -297 214 117 1171 247 117 43 chr15 43850022 43850186 -57530335 - MLT1G1 LTR MaLR 0 595 445 2183 145 18 0 chr15 43850186 43850517 -57530004 - MER1B DNA MER1_type 0 337 1 1171 247 117 43 chr15 43850517 43850906 -57529615 - MLT1G1 LTR MaLR -150 445 1 275 283 22 22 chr15 43850939 43851031 -57529490 + MIR3 SINE MIR 82 173 -35 306 302 5 116 chr15 43851453 43851642 -57528879 - MIR3 SINE MIR -10 198 31 442 286 34 27 chr15 43851775 43851922 -57528599 - MIR SINE MIR -50 212 65 193 329 0 0 chr15 43852018 43852091 -57528430 - MIR SINE MIR -2 260 188 265 264 166 43 chr15 43852131 43852294 -57528227 - MIR SINE MIR -62 200 18 424 291 6 85 chr15 43852520 43852685 -57527836 + MIR3 SINE MIR 23 174 -34 195 69 0 0 chr15 43852903 43852932 -57527589 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4705 148 19 19 chr15 43853983 43854933 -57525588 + L1MB1 LINE L1 5219 6168 0 198 103 0 0 chr15 43854937 43854966 -57525555 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 2316 78 0 0 chr15 43855488 43855784 -57524737 - AluY SINE Alu -15 296 1 1911 163 9 9 chr15 43856377 43856726 -57523795 - L1PB4 LINE L1 -1 6155 5807 209 233 0 17 chr15 43857549 43857609 -57522912 + (TAA)n Simple_repeat Simple_repeat 1 59 0 22 56 0 0 chr15 43857678 43857714 -57522807 + AT_rich Low_complexity Low_complexity 1 36 0 492 260 8 16 chr15 43857830 43857953 -57522568 + L2 LINE L2 3192 3313 0 194 207 0 207 chr15 43858160 43858271 -57522250 - L2 LINE L2 0 3272 3185 251 323 51 41 chr15 43860015 43860102 -57520419 + L3 LINE CR1 639 724 -853 1884 179 3 0 chr15 43860102 43860404 -57520117 + AluJo SINE Alu 1 303 -9 251 323 51 41 chr15 43860404 43860511 -57520010 + L3 LINE CR1 724 835 -742 655 320 111 53 chr15 43860532 43861457 -57519064 - L2 LINE L2 -25 3247 2154 231 341 213 27 chr15 43861454 43861782 -57518739 + L3 LINE CR1 913 1301 -276 * 305 339 47 0 chr15 43861815 43861942 -57518579 + L3 LINE CR1 1441 1573 -4 298 315 115 0 chr15 43861996 43862126 -57518395 + MIR3 SINE MIR 32 176 -32 297 239 44 18 chr15 43864113 43864226 -57516295 - L1MD3 LINE L1 -10 7985 7870 1247 194 84 0 chr15 43864230 43864539 -57515982 - L1MC4a LINE L1 -246 7562 7228 201 322 230 6 chr15 43864793 43864967 -57515554 + MIR SINE MIR 36 248 -14 503 358 201 16 chr15 43865059 43865442 -57515079 - L2 LINE L2 0 3313 2860 1842 174 0 82 chr15 43866318 43866743 -57513778 + MLT1B LTR MaLR 1 390 0 517 226 28 66 chr15 43866866 43866970 -57513551 + MER5B DNA MER1_type 1 97 -81 1544 180 10 33 chr15 43866970 43867276 -57513245 + AluJo SINE Alu 1 299 -13 517 226 28 66 chr15 43867276 43867352 -57513169 + MER5B DNA MER1_type 97 174 -4 774 261 0 5 chr15 43867370 43867558 -57512963 + MER5A DNA MER1_type 2 188 -1 311 121 17 0 chr15 43868815 43868873 -57511648 + (CA)n Simple_repeat Simple_repeat 2 60 0 302 313 31 31 chr15 43869984 43870112 -57510409 - MIR SINE MIR -109 153 26 386 303 56 43 chr15 43871203 43871365 -57509156 + MIR3 SINE MIR 32 195 -13 444 296 53 0 chr15 43871986 43872138 -57508383 - MER117 DNA MER1_type -10 187 28 527 316 64 11 chr15 43872581 43872768 -57507753 - MIR SINE MIR -9 253 57 2414 209 96 105 chr15 43873047 43873599 -57506922 + L1MC1 LINE L1 4060 4615 -1556 1480 173 0 39 chr15 43873599 43873853 -57506668 + AluJo SINE Alu 39 282 -30 191 36 36 0 chr15 43873858 43873886 -57506635 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 2414 209 96 105 chr15 43873886 43873962 -57506559 + L1MC1 LINE L1 4619 4694 -1477 668 173 0 0 chr15 43873962 43874066 -57506455 + FLAM_A SINE Alu 2 105 -37 2414 209 96 105 chr15 43874066 43874603 -57505918 + L1MC1 LINE L1 4694 5325 -846 2048 156 13 0 chr15 43874603 43874976 -57505545 + L1MA8 LINE L1 5914 6291 0 2414 209 96 105 chr15 43874976 43875011 -57505510 + L1MC1 LINE L1 5325 5359 -812 4630 142 22 4 chr15 43875516 43876319 -57504202 + L1MC1 LINE L1 5319 6136 -197 825 188 0 0 chr15 43877470 43877603 -57502918 - FLAM_C SINE Alu -10 133 1 21 0 0 0 chr15 43877650 43877671 -57502850 + AT_rich Low_complexity Low_complexity 1 21 0 1834 137 27 27 chr15 43877754 43878046 -57502475 + AluJb SINE Alu 1 292 -20 197 222 241 0 chr15 43878345 43878399 -57502122 - L2 LINE L2 -3 3310 3244 291 93 0 0 chr15 43880014 43880057 -57500464 + (TC)n Simple_repeat Simple_repeat 1 43 0 285 313 96 30 chr15 43882115 43882264 -57498257 + MIR SINE MIR 23 145 -63 1036 288 96 17 chr15 43882283 43882752 -57497769 + LTR33 LTR ERVL 14 519 -2 206 222 0 0 chr15 43882849 43882894 -57497627 + (TGAA)n Simple_repeat Simple_repeat 3 47 0 24 0 0 0 chr15 43883481 43883505 -57497016 + AT_rich Low_complexity Low_complexity 1 24 0 207 69 0 0 chr15 43883897 43883926 -57496595 + (CA)n Simple_repeat Simple_repeat 2 30 0 2796 0 0 3 chr15 43884345 43884649 -57495872 + AluYa5 SINE Alu 1 303 -8 240 338 123 32 chr15 43885659 43885813 -57494708 + MIR SINE MIR 20 187 -75 672 309 15 0 chr15 43887279 43887483 -57493038 - MIR SINE MIR -10 252 46 688 242 65 32 chr15 43887563 43887749 -57492772 + MIR SINE MIR 50 241 -21 216 212 242 0 chr15 43888016 43888082 -57492439 - L2 LINE L2 -1 3271 3190 339 291 120 8 chr15 43888168 43888285 -57492236 - L2 LINE L2 -4 3268 3139 21 0 0 0 chr15 43890653 43890674 -57489847 + GC_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr15 43890827 43890847 -57489674 + (CTG)n Simple_repeat Simple_repeat 3 22 0 252 0 0 0 chr15 43891085 43891113 -57489408 + (TG)n Simple_repeat Simple_repeat 1 28 0 423 0 0 0 chr15 43891150 43891197 -57489324 + (TG)n Simple_repeat Simple_repeat 2 48 0 325 294 172 41 chr15 43891546 43891913 -57488608 + L1M2 LINE L1 837 1251 -5598 222 37 0 0 chr15 43893575 43893602 -57486919 + (T)n Simple_repeat Simple_repeat 1 27 0 680 355 16 0 chr15 43896108 43896353 -57484168 - MIR SINE MIR -1 261 13 361 291 36 129 chr15 43897575 43897963 -57482558 - L2 LINE L2 0 3272 2921 187 129 0 0 chr15 43898049 43898080 -57482441 - L2 LINE L2 -3 3310 3280 209 250 162 0 chr15 43898545 43898613 -57481908 + L2 LINE L2 3191 3269 -3 400 254 9 18 chr15 43899516 43899630 -57480891 - MIR SINE MIR 0 262 150 708 225 54 59 chr15 43899636 43899858 -57480663 - MIR SINE MIR -2 260 40 * 782 268 25 29 chr15 43899855 43900094 -57480427 + MIR SINE MIR 14 251 -11 221 255 0 0 chr15 43900121 43900168 -57480353 - MIR SINE MIR -215 47 1 405 333 45 11 chr15 43900560 43900737 -57479784 - MER5A DNA MER1_type 0 189 7 203 250 31 16 chr15 43900755 43900819 -57479702 - MER5A DNA MER1_type 0 189 125 208 322 33 25 chr15 43901439 43901560 -57478961 + MIR SINE MIR 16 137 -71 614 246 98 41 chr15 43901756 43901908 -57478613 - MIR SINE MIR 0 262 89 2194 182 80 31 chr15 43901908 43902386 -57478135 - MLT1D LTR MaLR -4 501 1 614 246 98 41 chr15 43902386 43902477 -57478044 - MIR SINE MIR -173 89 5 187 344 16 0 chr15 43903308 43903372 -57477149 + L3 LINE CR1 1512 1576 -1 219 36 0 0 chr15 43903386 43903414 -57477107 + (TTTAG)n Simple_repeat Simple_repeat 3 30 0 28 0 0 0 chr15 43903420 43903448 -57477073 + AT_rich Low_complexity Low_complexity 1 28 0 277 266 0 13 chr15 43905133 43905212 -57475309 + (TA)n Simple_repeat Simple_repeat 1 78 0 370 281 98 30 chr15 43905267 43905470 -57475051 + MIR SINE MIR 38 254 -8 927 258 166 26 chr15 43905480 43905871 -57474650 - MLT1L LTR MaLR -7 608 163 368 298 40 0 chr15 43906974 43907098 -57473423 + MIR SINE MIR 102 230 -32 204 125 0 0 chr15 43907551 43907583 -57472938 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 279 153 136 0 chr15 43907722 43907781 -57472740 + MER45 DNA AcHobo 60 126 -914 * 329 231 15 0 chr15 43907772 43907837 -57472684 + MER45 DNA AcHobo 1516 1581 0 235 230 81 58 chr15 43907932 43908019 -57472502 + MIR3 SINE MIR 82 170 -38 220 200 36 0 chr15 43909396 43909451 -57471070 + (TTTAA)n Simple_repeat Simple_repeat 3 59 0 340 275 143 68 chr15 43910851 43911341 -57469180 - L1ME4a LINE L1 -188 5933 5415 3148 60 2 2 chr15 43911385 43911783 -57468738 - L1PA8A LINE L1 -28 6103 5706 1292 246 92 41 chr15 43912055 43912514 -57468007 - MLT1G1 LTR MaLR -29 566 85 369 291 171 0 chr15 43913210 43913385 -57467136 - MIR SINE MIR 0 262 58 2348 94 0 3 chr15 43913572 43913879 -57466642 + AluSc SINE Alu 1 306 -3 256 258 333 8 chr15 43914509 43914629 -57465892 + MIR SINE MIR 13 171 -91 2352 91 10 0 chr15 43914768 43915075 -57465446 + AluSp SINE Alu 1 310 -3 400 282 113 52 chr15 43915166 43915414 -57465107 - L2 LINE L2 -86 3186 2924 25 31 0 0 chr15 43916586 43916618 -57463903 + AT_rich Low_complexity Low_complexity 1 32 0 398 343 7 29 chr15 43917371 43917508 -57463013 - L2 LINE L2 0 3272 3139 555 303 37 6 chr15 43918210 43918372 -57462149 - MIR3 SINE MIR -7 201 35 541 256 106 40 chr15 43918567 43918794 -57461727 - MIR SINE MIR -14 248 7 421 162 27 0 chr15 43919199 43919273 -57461248 - L1MD2 LINE L1 -19 6340 6265 21 0 0 0 chr15 43920318 43920339 -57460182 + AT_rich Low_complexity Low_complexity 1 21 0 317 292 159 0 chr15 43921674 43921787 -57458734 - L2 LINE L2 -1 3271 3141 396 373 40 8 chr15 43922001 43922248 -57458273 - L2 LINE L2 -445 2869 2615 2167 132 3 0 chr15 43922404 43922714 -57457807 - AluSq SINE Alu -2 311 1 518 361 51 5 chr15 43922717 43922933 -57457588 - MIR SINE MIR -15 247 22 292 271 178 8 chr15 43923696 43923825 -57456696 - MIR3 SINE MIR -48 160 10 337 322 92 57 chr15 43925244 43925558 -57454963 - L2 LINE L2 -337 2977 2653 503 329 149 53 chr15 43925562 43926060 -57454461 - L2 LINE L2 -1248 2066 1617 2136 123 7 0 chr15 43926060 43926352 -57454169 + AluSx SINE Alu 1 294 -18 503 329 149 53 chr15 43926352 43926949 -57453572 - L2 LINE L2 -1697 1617 866 818 206 0 0 chr15 43927444 43927575 -57452946 + FLAM_C SINE Alu 2 132 -11 940 282 114 37 chr15 43927628 43928273 -57452248 - L1ME LINE L1 -4664 1597 817 2259 105 20 0 chr15 43928273 43928577 -57451944 - AluSg SINE Alu 0 310 1 940 282 114 37 chr15 43928577 43928891 -57451630 - L1ME LINE L1 -5444 817 529 279 174 0 43 chr15 43929145 43929237 -57451284 + (TATAA)n Simple_repeat Simple_repeat 4 91 0 598 310 24 39 chr15 43929732 43929987 -57450534 - MIR SINE MIR -10 252 2 22 0 0 0 chr15 43930227 43930249 -57450272 + AT_rich Low_complexity Low_complexity 1 22 0 450 281 41 14 chr15 43931232 43931378 -57449143 - MIR SINE MIR -93 169 20 508 190 131 7 chr15 43931936 43932073 -57448448 - L1MA10 LINE L1 -4 6330 6177 554 343 11 0 chr15 43932133 43932308 -57448213 + MIR3 SINE MIR 21 197 -11 187 267 99 50 chr15 43935306 43935407 -57445114 + MIR SINE MIR 85 190 -72 180 200 0 0 chr15 43938710 43938750 -57441771 + (CA)n Simple_repeat Simple_repeat 1 40 0 22 70 0 0 chr15 43940252 43940295 -57440226 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr15 43943773 43943795 -57436726 + AT_rich Low_complexity Low_complexity 1 22 0 384 22 0 0 chr15 43945681 43945726 -57434795 + (TG)n Simple_repeat Simple_repeat 2 46 0 194 0 39 0 chr15 43946195 43946221 -57434300 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr15 43947593 43947616 -57432905 + AT_rich Low_complexity Low_complexity 1 23 0 2071 104 0 21 chr15 43948709 43948989 -57431532 - AluSx SINE Alu -38 274 1 241 264 148 71 chr15 43949678 43949833 -57430688 + MIR3 SINE MIR 39 205 -3 467 246 42 0 chr15 43950490 43950608 -57429913 + MER3 DNA MER1_type 1 123 -86 23 33 0 0 chr15 43952364 43952394 -57428127 + AT_rich Low_complexity Low_complexity 1 30 0 3433 131 46 26 chr15 43953537 43954080 -57426441 + MER41C LTR ERV1 1 554 0 763 286 82 30 chr15 43955660 43956012 -57424509 + MLT1L LTR MaLR 66 551 -64 2030 125 4 0 chr15 43956012 43956322 -57424199 - AluSq SINE Alu 0 312 2 763 286 82 30 chr15 43956322 43956389 -57424132 + MLT1L LTR MaLR 551 613 -2 649 218 45 62 chr15 43956508 43956687 -57423834 + MER5B DNA MER1_type 3 178 0 958 225 53 125 chr15 43956731 43956765 -57423756 - MLT1H LTR MaLR 0 549 514 1946 228 81 65 chr15 43956765 43957127 -57423394 - MLT1E3 LTR MaLR 0 624 246 2148 113 0 32 chr15 43957127 43957437 -57423084 - AluSx SINE Alu -12 300 1 1946 228 81 65 chr15 43957437 43957688 -57422833 - MLT1E3 LTR MaLR -378 246 1 958 225 53 125 chr15 43957688 43958184 -57422337 - MLT1H LTR MaLR -35 514 17 244 250 0 42 chr15 43959117 43959189 -57421332 - L2 LINE L2 0 3313 3245 332 311 144 27 chr15 43960767 43960989 -57419532 + L2 LINE L2 3001 3248 -65 384 71 0 0 chr15 43961247 43961303 -57419218 + (TG)n Simple_repeat Simple_repeat 2 57 0 220 271 29 14 chr15 43961306 43961376 -57419145 + G-rich Low_complexity Low_complexity 3 73 0 181 73 24 24 chr15 43961579 43961620 -57418901 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 24 32 0 0 chr15 43961806 43961837 -57418684 + AT_rich Low_complexity Low_complexity 1 31 0 1620 142 7 71 chr15 43962382 43962514 -57418007 + AluJo SINE Alu 6 110 -202 2467 58 0 3 chr15 43962514 43962809 -57417712 + AluY SINE Alu 2 295 -16 1620 142 7 71 chr15 43962809 43962971 -57417550 + AluJo SINE Alu 110 281 -31 190 213 21 21 chr15 43963911 43963958 -57416563 + MIR SINE MIR 26 72 -136 368 274 112 76 chr15 43964062 43964285 -57416236 + MIR SINE MIR 29 259 -3 22 0 0 0 chr15 43964286 43964308 -57416213 + AT_rich Low_complexity Low_complexity 1 22 0 253 281 124 0 chr15 43966220 43966309 -57414212 + L3b LINE CR1 1328 1427 -156 753 260 29 45 chr15 43966583 43966825 -57413696 - MIR SINE MIR -8 254 17 24 0 0 0 chr15 43967261 43967285 -57413236 + AT_rich Low_complexity Low_complexity 1 24 0 359 289 116 16 chr15 43967428 43967549 -57412972 - MER94 DNA DNA -1 133 1 799 275 199 8 chr15 43968793 43969164 -57411357 - MLT1H1 LTR MaLR -113 442 1 845 196 18 31 chr15 43969796 43969959 -57410562 + FRAM SINE Alu 1 161 -5 234 91 0 0 chr15 43970079 43970112 -57410409 + (TA)n Simple_repeat Simple_repeat 1 33 0 790 140 21 166 chr15 43970854 43971047 -57409474 + AluJb SINE Alu 131 295 -17 213 213 21 0 chr15 43971108 43971155 -57409366 + (TG)n Simple_repeat Simple_repeat 1 48 0 210 143 0 0 chr15 43971156 43971191 -57409330 + (TA)n Simple_repeat Simple_repeat 1 35 0 261 254 79 97 chr15 43971448 43971562 -57408959 - L2 LINE L2 -25 3247 3136 2270 251 70 12 chr15 43971842 43972515 -57408006 + L1ME1 LINE L1 5449 6160 -6 216 0 0 0 chr15 43972529 43972553 -57407968 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2363 91 0 10 chr15 43973236 43973544 -57406977 - AluSx SINE Alu -7 305 1 23 0 0 0 chr15 43973570 43973593 -57406928 + AT_rich Low_complexity Low_complexity 1 23 0 2178 117 0 0 chr15 43973599 43973909 -57406612 + AluSx SINE Alu 1 310 0 520 289 140 62 chr15 43973996 43974853 -57405668 - L2 LINE L2 -76 3237 2309 209 298 58 117 chr15 43975622 43975793 -57404728 + MER5A DNA MER1_type 13 173 -16 * 364 205 295 0 chr15 43975684 43975796 -57404725 - MER5A DNA MER1_type -19 170 26 724 199 0 7 chr15 43976168 43976304 -57404217 + MIR SINE MIR 62 196 -66 686 242 26 46 chr15 43976934 43977128 -57403393 - MIR SINE MIR -53 209 20 1172 161 16 0 chr15 43977234 43977420 -57403101 - MER5A DNA MER1_type 0 189 1 872 181 16 66 chr15 43977429 43977570 -57402951 + MER5B DNA MER1_type 2 134 -44 1634 203 0 20 chr15 43977570 43977876 -57402645 + AluJo SINE Alu 1 300 -12 872 181 16 66 chr15 43977876 43977916 -57402605 + MER5B DNA MER1_type 134 174 -4 22 0 0 0 chr15 43979983 43980005 -57400516 + AT_rich Low_complexity Low_complexity 1 22 0 276 235 20 31 chr15 43980065 43980163 -57400358 - HAL1b LINE L1 -330 1018 922 1413 121 14 10 chr15 43980177 43980384 -57400137 + AluSx SINE Alu 3 210 -102 30 0 0 0 chr15 43980408 43980438 -57400083 + AT_rich Low_complexity Low_complexity 1 30 0 226 271 17 0 chr15 43980441 43980500 -57400021 - HAL1b LINE L1 -433 915 856 1264 206 120 35 chr15 43980553 43980952 -57399569 - Zaphod DNA AcHobo -9 4022 3590 259 216 82 0 chr15 43980943 43981040 -57399481 - Zaphod DNA AcHobo -3041 990 886 * 2404 93 0 0 chr15 43981308 43981618 -57398903 - AluSg SINE Alu 0 310 1 760 243 75 6 chr15 43981669 43981842 -57398679 + MIR SINE MIR 2 186 -76 35 54 0 0 chr15 43981915 43981971 -57398550 + AT_rich Low_complexity Low_complexity 1 56 0 227 321 12 12 chr15 43982279 43982363 -57398158 - MLT1K LTR MaLR -34 554 471 573 317 38 56 chr15 43982390 43982677 -57397844 - MLT1K LTR MaLR -215 373 92 2087 137 0 3 chr15 43983298 43983598 -57396923 + AluSx SINE Alu 1 299 -13 1586 244 113 4 chr15 43983680 43984130 -57396391 - MLT1F LTR MaLR 0 542 44 365 225 12 0 chr15 43985496 43985576 -57394945 - MLT1F LTR MaLR -338 204 124 375 247 11 21 chr15 43985647 43985740 -57394781 + MIR3 SINE MIR 67 158 -50 702 268 73 19 chr15 43986442 43986794 -57393727 + LTR16A1 LTR ERVL 12 453 -4 294 363 50 25 chr15 43987002 43987203 -57393318 + MIR3 SINE MIR 3 208 0 199 324 99 9 chr15 43987653 43987764 -57392757 - MIR SINE MIR -46 216 96 291 213 205 25 chr15 43987964 43988086 -57392435 + MER103 DNA DNA 16 159 -7 261 0 0 0 chr15 43989107 43989136 -57391385 + (TG)n Simple_repeat Simple_repeat 2 30 0 1112 278 64 33 chr15 43989958 43990347 -57390174 - MLT1I LTR MaLR -3 406 6 219 139 0 0 chr15 43992259 43992295 -57388226 + (TTC)n Simple_repeat Simple_repeat 1 36 0 2638 171 98 36 chr15 43992357 43992890 -57387631 + MLT1F1 LTR MaLR 2 567 0 432 0 0 0 chr15 43993926 43993974 -57386547 + (CA)n Simple_repeat Simple_repeat 2 49 0 24 0 0 0 chr15 43996151 43996175 -57384346 + AT_rich Low_complexity Low_complexity 1 24 0 2041 182 28 8 chr15 43996777 43997135 -57383386 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr15 43998128 43998149 -57382372 + AT_rich Low_complexity Low_complexity 1 21 0 3079 222 66 29 chr15 43998173 43998813 -57381708 - L1ME2 LINE L1 -63 6101 5399 2597 159 21 23 chr15 43998813 43999240 -57381281 + MSTB LTR MaLR 1 426 0 3079 222 66 29 chr15 43999240 43999532 -57380989 - L1ME2 LINE L1 -765 5399 5119 21 0 0 0 chr15 43999600 43999621 -57380900 + AT_rich Low_complexity Low_complexity 1 21 0 649 206 129 46 chr15 43999709 43999903 -57380618 + MER63A DNA MER1_type 1 210 0 21 36 0 0 chr15 44000988 44001016 -57379505 + AT_rich Low_complexity Low_complexity 1 28 0 1142 133 61 10 chr15 44001046 44001242 -57379279 - MER2 DNA MER2_type -139 206 1 326 267 36 61 chr15 44001326 44001491 -57379030 - L1MEd LINE L1 -5957 162 2 1324 263 91 21 chr15 44002046 44002521 -57378000 - LTR33A LTR ERVL -3 520 13 268 239 100 30 chr15 44002602 44002931 -57377590 + L1ME4a LINE L1 5731 6119 -2 950 275 107 42 chr15 44003215 44003597 -57376924 + MLT1I LTR MaLR 3 409 0 662 216 11 13 chr15 44004017 44004210 -57376311 + L1MC4a LINE L1 6445 6601 -1207 243 0 0 0 chr15 44004221 44004248 -57376273 + (CA)n Simple_repeat Simple_repeat 2 28 0 2595 197 42 76 chr15 44004292 44004660 -57375861 + L1MC4 LINE L1 6866 7196 -846 6561 110 11 1 chr15 44004660 44006081 -57374440 + L1PA10 LINE L1 4728 6165 -3 2595 197 42 76 chr15 44006081 44006472 -57374049 + L1MC4 LINE L1 7196 7599 -443 362 192 41 0 chr15 44006469 44006542 -57373979 + L1MC4 LINE L1 7966 8041 -1 * 198 298 0 18 chr15 44007651 44007708 -57372813 + L2 LINE L2 3243 3298 -15 664 301 99 18 chr15 44008147 44008529 -57371992 + LTR16C LTR ERVL 79 491 0 2326 132 35 24 chr15 44008690 44009061 -57371460 - THE1C LTR MaLR 0 375 1 409 334 123 20 chr15 44009337 44009744 -57370777 + L1PA3 LINE L1 5432 5880 -275 * 2231 247 64 35 chr15 44009382 44010034 -57370487 + L1ME1 LINE L1 5491 6161 -5 952 151 0 0 chr15 44010529 44010668 -57369853 + FLAM_C SINE Alu 1 139 -4 1109 263 76 66 chr15 44010668 44011181 -57369340 - MER115 DNA AcHobo -76 617 100 1590 234 33 70 chr15 44013583 44014037 -57366484 + MLT1H LTR MaLR 1 437 -112 1807 184 57 25 chr15 44015978 44016331 -57364190 + MLT1A1 LTR MaLR 1 364 -1 834 156 6 11 chr15 44019906 44020086 -57360435 + GA-rich Low_complexity Low_complexity 1 179 0 2443 81 0 3 chr15 44021173 44021480 -57359041 + AluY SINE Alu 1 306 -5 1232 123 0 0 chr15 44021920 44022090 -57358431 + FRAM SINE Alu 1 167 -9 21 0 0 0 chr15 44022091 44022112 -57358409 + AT_rich Low_complexity Low_complexity 1 21 0 469 308 190 4 chr15 44022456 44022719 -57357802 - L3 LINE CR1 -5 1572 1261 1378 218 99 26 chr15 44022856 44023200 -57357321 + MLT1A2 LTR MaLR 2 370 -4 1234 227 28 13 chr15 44023221 44023538 -57356983 + MER33 DNA MER1_type 1 322 -2 756 340 96 52 chr15 44023807 44024725 -57355796 - L2 LINE L2 -1 3312 2344 2005 136 3 10 chr15 44025159 44025474 -57355047 + AluSx SINE Alu 1 312 0 2602 71 0 0 chr15 44025841 44026152 -57354369 + AluY SINE Alu 1 311 0 474 328 18 93 chr15 44027383 44027834 -57352687 + LTR67 LTR ERVL 5 421 -136 1139 267 77 45 chr15 44027892 44028656 -57351865 - HAL1 LINE L1 -832 1675 887 1718 168 0 7 chr15 44029589 44029875 -57350646 + AluJo SINE Alu 1 284 -28 27 29 0 0 chr15 44029877 44029911 -57350610 + AT_rich Low_complexity Low_complexity 1 34 0 256 310 138 0 chr15 44030946 44031033 -57349488 + L2 LINE L2 3162 3260 -12 323 245 119 46 chr15 44031274 44031425 -57349096 - MIR SINE MIR -74 188 27 215 240 202 23 chr15 44032917 44033046 -57347475 - MIR SINE MIR -37 225 74 21 0 0 0 chr15 44033086 44033107 -57347414 + AT_rich Low_complexity Low_complexity 1 21 0 2086 181 44 92 chr15 44033180 44033692 -57346829 + MLT2B1 LTR ERVL 1 536 16 180 0 0 0 chr15 44033692 44033712 -57346809 + (CA)n Simple_repeat Simple_repeat 1 20 0 * 228 35 0 0 chr15 44033711 44033740 -57346781 + (GA)n Simple_repeat Simple_repeat 2 30 0 2086 181 44 92 chr15 44033712 44033773 -57346748 + MLT2B1 LTR ERVL 535 520 0 246 213 43 0 chr15 44033785 44033832 -57346689 - L2 LINE L2 -36 3277 3229 492 277 62 0 chr15 44034126 44034296 -57346225 + MIR SINE MIR 50 228 -34 341 303 65 26 chr15 44035496 44035651 -57344870 + MLT1L LTR MaLR 113 273 -342 273 242 81 32 chr15 44035656 44035780 -57344741 + MLT1L LTR MaLR 484 613 -2 534 209 209 0 chr15 44035923 44036071 -57344450 - MER5A DNA MER1_type 0 189 11 653 285 51 95 chr15 44036166 44036598 -57343923 + MLT1K LTR MaLR 176 588 0 272 305 0 11 chr15 44036652 44036747 -57343774 + MER58C DNA MER1_type 52 145 -70 532 202 22 13 chr15 44036753 44036982 -57343539 + GA-rich Low_complexity Low_complexity 1 231 0 911 214 12 0 chr15 44037012 44037185 -57343336 - MER58B DNA MER1_type 0 341 167 1845 127 83 50 chr15 44037559 44037922 -57342599 + THE1C LTR MaLR 1 375 0 2212 118 0 7 chr15 44038362 44038667 -57341854 - AluSp SINE Alu -10 303 1 1370 230 98 62 chr15 44038668 44039116 -57341405 + MLT1D LTR MaLR 42 505 0 2354 184 23 28 chr15 44039313 44039743 -57340778 - MSTB1 LTR MaLR -4 428 1 186 225 0 0 chr15 44039890 44039930 -57340591 + L3b LINE CR1 1542 1581 -2 1105 251 111 36 chr15 44040049 44040552 -57339969 + L1ME4a LINE L1 5570 6110 -11 21 57 0 0 chr15 44040552 44040587 -57339934 + AT_rich Low_complexity Low_complexity 1 35 0 7141 70 17 9 chr15 44040757 44042400 -57338121 - L1PA7 LINE L1 -1 6153 4506 239 245 0 0 chr15 44042411 44042464 -57338057 + MIR SINE MIR 81 133 -75 1119 234 22 0 chr15 44043044 44043271 -57337250 + MLT1G LTR MaLR 354 585 -5 1927 207 13 55 chr15 44043373 44043754 -57336767 + MLT1A1 LTR MaLR 1 365 0 191 274 226 0 chr15 44044526 44044632 -57335889 + MIR SINE MIR 58 187 -75 1010 273 70 64 chr15 44045337 44045791 -57334730 - LTR16A1 LTR ERVL 0 457 1 516 297 115 38 chr15 44045820 44046029 -57334492 + MIR SINE MIR 13 237 -25 429 290 5 82 chr15 44047147 44047354 -57333167 + MIR3 SINE MIR 7 197 -11 318 267 11 11 chr15 44047442 44047532 -57332989 - MIR3 SINE MIR 0 208 119 222 37 0 0 chr15 44047844 44047871 -57332650 + (CA)n Simple_repeat Simple_repeat 2 28 0 358 263 172 68 chr15 44048043 44048420 -57332101 + L1MC2 LINE L1 5255 5669 -452 1360 181 166 21 chr15 44048600 44048758 -57331763 - MLT1B LTR MaLR -4 386 252 276 30 0 0 chr15 44048758 44048791 -57331730 + (CA)n Simple_repeat Simple_repeat 2 34 0 1360 181 166 21 chr15 44048791 44048969 -57331552 - MLT1B LTR MaLR -138 252 1 196 297 31 0 chr15 44048995 44049059 -57331462 - L2 LINE L2 0 3272 3207 3480 166 44 14 chr15 44049168 44049830 -57330691 + L1MC2 LINE L1 5661 6342 -2 496 341 45 100 chr15 44053955 44054747 -57325774 - L2 LINE L2 -778 2536 1788 2094 169 0 3 chr15 44054937 44055274 -57325247 + MER1B DNA MER1_type 2 337 0 289 315 62 0 chr15 44055526 44055656 -57324865 - MER102a DNA MER1_type -19 311 174 1502 230 3 0 chr15 44057012 44057303 -57323218 + AluJo SINE Alu 10 301 -11 273 318 47 62 chr15 44057421 44057613 -57322908 + MER5A DNA MER1_type 1 189 0 269 140 18 0 chr15 44058166 44058223 -57322298 + CT-rich Low_complexity Low_complexity 2 59 0 222 62 0 0 chr15 44058223 44058255 -57322266 + (CA)n Simple_repeat Simple_repeat 1 32 0 24 32 0 0 chr15 44059160 44059191 -57321330 + AT_rich Low_complexity Low_complexity 1 31 0 1673 224 143 27 chr15 44059769 44060425 -57320096 + MER50 LTR ERV1 1 732 -2 306 0 0 0 chr15 44061071 44061105 -57319416 + (CA)n Simple_repeat Simple_repeat 1 34 0 839 244 119 35 chr15 44061282 44061300 -57319221 + L1ME3A LINE L1 5735 5750 -420 1993 129 34 45 chr15 44061300 44061679 -57318842 - THE1C LTR MaLR 0 375 1 839 244 119 35 chr15 44061679 44062037 -57318484 + L1ME3A LINE L1 5750 6143 -27 429 253 32 26 chr15 44062604 44062767 -57317754 + MIR3 SINE MIR 10 174 -34 2320 116 3 18 chr15 44062836 44063216 -57317305 + L1MA2 LINE L1 5931 6304 0 189 0 0 0 chr15 44064157 44064178 -57316343 + (A)n Simple_repeat Simple_repeat 1 21 0 496 187 19 0 chr15 44064599 44064706 -57315815 - MER57A LTR ERV1 0 403 295 2044 140 0 0 chr15 44065132 44065460 -57315061 - MER47A DNA MER2_type 0 366 39 4684 86 12 21 chr15 44065471 44066025 -57314496 - L1P LINE L1 -2469 3677 3130 2496 80 0 6 chr15 44066025 44066337 -57314184 - AluY SINE Alu -1 310 1 4684 86 12 21 chr15 44066337 44066526 -57313995 - L1P LINE L1 -3016 3130 2941 6970 83 1 1 chr15 44066526 44067525 -57312996 + L1P LINE L1 3700 4698 -1448 3088 48 20 0 chr15 44067525 44067916 -57312605 + L1PA7 LINE L1 5754 6154 0 1065 197 47 0 chr15 44067924 44068178 -57312343 + L1MD3 LINE L1 7730 7995 0 508 192 0 210 chr15 44068466 44068695 -57311826 + MIR SINE MIR 46 226 -36 222 105 0 0 chr15 44068707 44068745 -57311776 + (ATG)n Simple_repeat Simple_repeat 3 40 0 25 31 0 0 chr15 44070207 44070239 -57310282 + AT_rich Low_complexity Low_complexity 1 32 0 28 0 0 0 chr15 44070757 44070785 -57309736 + AT_rich Low_complexity Low_complexity 1 28 0 563 287 66 76 chr15 44072582 44072909 -57307612 - MLT1L LTR MaLR 0 615 293 2171 126 0 3 chr15 44072909 44073203 -57307318 - AluSc SINE Alu -16 293 1 563 287 66 76 chr15 44073203 44073363 -57307158 - MLT1L LTR MaLR -322 293 133 299 313 80 30 chr15 44074335 44074699 -57305822 + L1MEd LINE L1 2 383 -5736 462 277 9 0 chr15 44074916 44075028 -57305493 - MER81 DNA DNA 0 114 2 251 257 248 10 chr15 44075047 44075148 -57305373 + L1MEd LINE L1 502 626 -5493 502 278 72 14 chr15 44075425 44075634 -57304887 - L1M4 LINE L1 -3616 2766 2546 2022 141 41 39 chr15 44075659 44076022 -57304499 - THE1B LTR MaLR 0 364 1 10953 90 16 3 chr15 44076026 44077576 -57302945 - THE1B-int LTR MaLR -11 1569 1 2106 129 35 59 chr15 44077576 44077949 -57302572 - THE1B LTR MaLR 0 364 1 733 313 77 20 chr15 44078032 44078383 -57302138 - LTR16B LTR ERVL -93 371 1 358 280 73 31 chr15 44078413 44078633 -57301888 - L1M4 LINE L1 -3863 2519 2287 2215 121 3 0 chr15 44078725 44079030 -57301491 + AluSx SINE Alu 1 306 -6 342 200 103 113 chr15 44079305 44079356 -57301165 + L1ME LINE L1 4637 4687 -1459 2298 121 0 0 chr15 44079356 44079661 -57300860 + AluSx SINE Alu 2 306 -6 342 200 103 113 chr15 44079661 44079804 -57300717 + L1ME LINE L1 4687 4829 -1317 559 155 20 20 chr15 44079806 44079954 -57300567 + CT-rich Low_complexity Low_complexity 3 150 0 315 0 0 0 chr15 44079954 44079989 -57300532 + (CA)n Simple_repeat Simple_repeat 2 36 0 228 300 30 70 chr15 44079989 44080389 -57300132 + L1ME LINE L1 4850 5233 -913 365 94 0 0 chr15 44080444 44080497 -57300024 + MADE1 DNA Mariner 3 55 -25 459 316 57 18 chr15 44080546 44080985 -57299536 + L1ME LINE L1 5352 5822 -348 1292 197 6 15 chr15 44081027 44081537 -57298984 + L1MB8 LINE L1 5636 6178 0 184 170 19 75 chr15 44082877 44082930 -57297591 + L2 LINE L2 2596 2645 -669 365 209 0 0 chr15 44083625 44083692 -57296829 - MER103 DNA DNA -45 121 55 223 284 45 0 chr15 44083807 44083874 -57296647 - MIR SINE MIR -134 128 59 198 314 131 7 chr15 44085245 44085382 -57295139 - MIR SINE MIR 0 262 109 358 304 108 19 chr15 44085476 44085634 -57294887 + MER5A DNA MER1_type 18 189 0 1284 88 47 5 chr15 44086138 44086330 -57294191 - MER30 DNA MER1_type -30 200 1 331 160 0 0 chr15 44086472 44086522 -57293999 + MER5A DNA MER1_type 26 75 -114 2166 123 3 19 chr15 44086523 44086943 -57293578 + AluSx SINE Alu 1 415 0 2421 166 35 39 chr15 44087546 44087709 -57292812 + L1MB7 LINE L1 5619 5781 -403 1730 169 115 3 chr15 44087709 44088065 -57292456 - MSTD LTR MaLR 0 396 1 2421 166 35 39 chr15 44088065 44088397 -57292124 + L1MB7 LINE L1 5781 6114 -70 216 0 0 0 chr15 44088397 44088421 -57292100 + (CA)n Simple_repeat Simple_repeat 2 25 0 2421 166 35 39 chr15 44088421 44088492 -57292029 + L1MB7 LINE L1 6114 6184 0 731 212 73 0 chr15 44088995 44089160 -57291361 - MER45A DNA AcHobo -1 177 1 396 0 0 0 chr15 44089175 44089219 -57291302 + (TG)n Simple_repeat Simple_repeat 2 45 0 329 0 24 0 chr15 44089224 44089265 -57291256 + (GA)n Simple_repeat Simple_repeat 1 42 0 282 73 0 0 chr15 44089831 44089872 -57290649 + (TG)n Simple_repeat Simple_repeat 2 42 0 696 288 27 23 chr15 44090019 44090238 -57290283 + MIR SINE MIR 2 221 -41 599 0 14 0 chr15 44093351 44093422 -57287099 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 2577 46 0 0 chr15 44093803 44094107 -57286414 + AluY SINE Alu 1 304 -7 378 216 117 18 chr15 44094567 44094678 -57285843 + MER5C DNA MER1_type 1 122 -202 21 36 0 0 chr15 44094887 44094915 -57285606 + AT_rich Low_complexity Low_complexity 1 28 0 394 324 74 56 chr15 44095405 44095837 -57284684 + LTR16A LTR ERVL 8 447 -3 319 345 0 73 chr15 44095905 44096096 -57284425 - L2 LINE L2 -172 3100 2924 264 303 81 10 chr15 44096106 44096205 -57284316 + L2 LINE L2 2986 3091 -222 443 234 186 21 chr15 44096458 44096603 -57283918 - MER5A DNA MER1_type 0 189 21 30 69 0 0 chr15 44097507 44097565 -57282956 + AT_rich Low_complexity Low_complexity 1 58 0 1012 78 0 0 chr15 44098252 44098381 -57282140 + AluY SINE Alu 180 308 -3 321 227 0 0 chr15 44098705 44098771 -57281750 + MER69 DNA AcHobo 2 67 -110 300 188 0 0 chr15 44098904 44098968 -57281553 + MER69 DNA AcHobo 2383 2446 -80 308 315 253 0 chr15 44099302 44099480 -57281041 - MIR SINE MIR -25 237 15 1142 172 38 0 chr15 44099573 44099782 -57280739 + MER20 DNA MER1_type 1 217 -2 183 80 0 0 chr15 44099920 44099945 -57280576 + (T)n Simple_repeat Simple_repeat 1 25 0 371 303 103 13 chr15 44099973 44100128 -57280393 + MIR3 SINE MIR 13 181 -27 363 105 0 0 chr15 44100847 44100904 -57279617 + (TG)n Simple_repeat Simple_repeat 1 57 0 2266 226 61 5 chr15 44100966 44101593 -57278928 - L1MC4 LINE L1 -143 7899 7238 429 137 0 95 chr15 44101604 44101699 -57278822 + AluJ/FLAM SINE Alu 5 90 -222 440 304 53 37 chr15 44102847 44103169 -57277352 + LTR16C LTR ERVL 84 410 -81 685 272 103 28 chr15 44103556 44103916 -57276605 + L1ME4a LINE L1 5462 5848 -273 285 289 58 16 chr15 44104094 44104215 -57276306 - L1MC4 LINE L1 -143 7899 7774 180 176 0 0 chr15 44104271 44104305 -57276216 + CT-rich Low_complexity Low_complexity 4 37 0 2104 125 51 3 chr15 44104370 44104723 -57275798 + L1MA4 LINE L1 5920 6289 -11 1555 158 28 111 chr15 44107414 44107812 -57272709 - MLT1A1 LTR MaLR 0 365 1 184 320 82 31 chr15 44107812 44107909 -57272612 - L2 LINE L2 -27 3286 3185 226 369 117 0 chr15 44108942 44109045 -57271476 - MIR SINE MIR -64 144 30 460 271 15 23 chr15 44110043 44110176 -57270345 - L2 LINE L2 0 3313 3182 363 89 0 0 chr15 44110176 44110232 -57270289 + (TG)n Simple_repeat Simple_repeat 2 57 0 220 329 0 0 chr15 44110232 44110305 -57270216 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 325 275 74 69 chr15 44110905 44111094 -57269427 - L1ME LINE L1 -357 5764 5575 809 168 10 10 chr15 44111179 44111477 -57269044 + GA-rich Low_complexity Low_complexity 1 298 0 788 113 11 43 chr15 44111477 44111663 -57268858 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 678 263 75 93 chr15 44111770 44112199 -57268322 - L2 LINE L2 -1208 2106 1686 2531 292 59 93 chr15 44112637 44113598 -57266923 - L2 LINE L2 -1637 1677 684 371 216 167 0 chr15 44113598 44113882 -57266639 + FRAM SINE Alu 35 335 0 2531 292 59 93 chr15 44113882 44114269 -57266252 - L2 LINE L2 -2630 684 280 2416 109 0 0 chr15 44114269 44114582 -57265939 + AluSq SINE Alu 1 313 0 2531 292 59 93 chr15 44114582 44114649 -57265872 - L2 LINE L2 -3034 280 212 186 189 0 0 chr15 44114649 44114686 -57265835 + GA-rich Low_complexity Low_complexity 4 40 0 269 297 0 0 chr15 44115314 44115378 -57265143 + L2 LINE L2 3250 3313 0 388 254 105 91 chr15 44115400 44115609 -57264912 + MIR SINE MIR 35 246 -16 297 297 127 0 chr15 44115996 44116114 -57264407 + MIR SINE MIR 122 254 -8 332 312 42 37 chr15 44116138 44116353 -57264168 + L1ME3A LINE L1 3136 3351 -2795 262 224 24 0 chr15 44116763 44116848 -57263673 + GA-rich Low_complexity Low_complexity 1 87 0 1253 300 75 25 chr15 44116877 44117288 -57263233 + L1ME3A LINE L1 4517 4906 -1264 1412 181 55 78 chr15 44117288 44117687 -57262834 + MLT1B LTR MaLR 1 390 0 1253 300 75 25 chr15 44117687 44118636 -57261885 + L1ME3A LINE L1 4906 5940 -230 215 301 14 0 chr15 44118832 44118905 -57261616 + (CATATA)n Simple_repeat Simple_repeat 2 75 0 295 306 0 10 chr15 44120457 44120555 -57259966 + GA-rich Low_complexity Low_complexity 4 100 0 2349 59 21 0 chr15 44120606 44120895 -57259626 + AluY SINE Alu 1 295 -16 267 31 0 0 chr15 44121312 44121344 -57259177 + (CA)n Simple_repeat Simple_repeat 2 33 0 466 287 122 8 chr15 44122082 44122289 -57258232 - MIR SINE MIR -25 237 11 779 235 26 56 chr15 44122297 44122339 -57258182 + MIR SINE MIR 36 78 -184 468 0 0 0 chr15 44122339 44122391 -57258130 + (TA)n Simple_repeat Simple_repeat 1 52 0 779 235 26 56 chr15 44122391 44122582 -57257939 + MIR SINE MIR 78 262 0 438 283 17 23 chr15 44123330 44123507 -57257014 - MLT1K LTR MaLR -35 553 378 379 324 42 0 chr15 44123640 44123782 -57256739 - MLT1K LTR MaLR -410 178 31 341 235 226 0 chr15 44124197 44124312 -57256209 + MIR SINE MIR 92 232 -30 244 245 71 61 chr15 44124493 44124591 -57255930 - MER5A DNA MER1_type -89 100 2 207 139 0 0 chr15 44124622 44124658 -57255863 + (GGAA)n Simple_repeat Simple_repeat 2 37 0 617 63 0 0 chr15 44125144 44125223 -57255298 + MADE1 DNA Mariner 2 80 0 1158 178 19 14 chr15 44125540 44125754 -57254767 + MER20 DNA MER1_type 1 215 -4 489 17 0 0 chr15 44125934 44125992 -57254529 + (TG)n Simple_repeat Simple_repeat 1 58 0 285 29 0 0 chr15 44125991 44126025 -57254496 + (GA)n Simple_repeat Simple_repeat 1 34 0 * 1856 211 31 56 chr15 44126950 44127467 -57253054 - MLT1D LTR MaLR -1 504 1 450 358 55 9 chr15 44128774 44128992 -57251529 - MIR SINE MIR -18 244 17 432 0 0 0 chr15 44129720 44129768 -57250753 + (TG)n Simple_repeat Simple_repeat 1 48 0 5976 108 20 15 chr15 44129900 44131889 -57248632 - L1PA15 LINE L1 0 6165 4167 329 312 26 45 chr15 44132208 44132362 -57248159 - L2 LINE L2 0 3313 3163 339 344 27 38 chr15 44135790 44135973 -57244548 - MIR3 SINE MIR -27 181 1 25 0 0 0 chr15 44135976 44136001 -57244520 + AT_rich Low_complexity Low_complexity 1 25 0 372 213 38 0 chr15 44136475 44136555 -57243966 - MER5A DNA MER1_type -104 85 3 212 336 29 10 chr15 44137057 44137161 -57243360 + L2 LINE L2 3160 3265 -48 223 181 153 14 chr15 44137385 44137457 -57243064 + MIR SINE MIR 180 261 -1 908 165 55 40 chr15 44138109 44138309 -57242212 - MLT1C LTR MaLR -264 203 1 407 284 45 32 chr15 44138991 44139146 -57241375 + L2 LINE L2 2914 3070 -202 2187 109 0 7 chr15 44139274 44139567 -57240954 + AluSx SINE Alu 1 291 -21 481 321 12 6 chr15 44139577 44139745 -57240776 + MIR SINE MIR 60 228 -34 529 327 118 9 chr15 44139845 44140056 -57240465 + MIR SINE MIR 21 254 -8 404 224 0 31 chr15 44140396 44140494 -57240027 - MIR3 SINE MIR -8 200 106 345 309 119 22 chr15 44143124 44143344 -57237177 + MIR SINE MIR 21 260 -2 280 289 0 0 chr15 44143408 44143460 -57237061 + L2 LINE L2 3201 3252 -20 184 316 98 53 chr15 44143629 44143762 -57236759 - L2 LINE L2 -208 3064 2926 691 269 56 32 chr15 44144121 44144370 -57236151 + MIR SINE MIR 8 262 0 541 294 85 44 chr15 44145869 44146029 -57234492 - L1ME4a LINE L1 -47 6074 5922 2066 241 87 22 chr15 44146029 44146617 -57233904 + MLT1E2 LTR MaLR 1 626 0 541 294 85 44 chr15 44146617 44146996 -57233525 - L1ME4a LINE L1 -199 5922 5513 217 288 106 62 chr15 44149535 44149761 -57230760 - L2 LINE L2 -204 3068 2833 393 252 187 32 chr15 44150592 44150747 -57229774 + MER5A DNA MER1_type 10 188 -1 334 302 16 56 chr15 44150910 44151036 -57229485 - MIR SINE MIR -65 197 77 2849 135 73 40 chr15 44151039 44151645 -57228876 - L1 LINE L1 -1596 4550 3925 5099 147 44 6 chr15 44151651 44153112 -57227409 + L1MA4 LINE L1 4601 6131 -169 1870 135 10 20 chr15 44153359 44153675 -57226846 + AluSx SINE Alu 1 312 0 2255 95 3 7 chr15 44154045 44154341 -57226180 + AluSx SINE Alu 4 298 -14 899 134 70 0 chr15 44154906 44155063 -57225458 + L1MA4 LINE L1 6121 6288 -12 2116 138 0 0 chr15 44155197 44155495 -57225026 - AluSx SINE Alu -14 298 1 387 327 58 30 chr15 44155947 44156454 -57224067 + L1ME LINE L1 4289 4816 -1330 405 302 186 41 chr15 44156496 44156597 -57223924 - L3 LINE CR1 -614 963 878 1930 177 35 44 chr15 44156597 44157027 -57223494 - LTR37A LTR ERV1 0 426 1 405 302 186 41 chr15 44157027 44157216 -57223305 - L3 LINE CR1 -699 878 631 437 263 46 53 chr15 44157408 44157560 -57222961 - L2 LINE L2 -1 3271 3121 1338 283 79 6 chr15 44158059 44158656 -57221865 + L1ME LINE L1 5178 5821 -349 311 191 8 24 chr15 44158703 44158829 -57221692 + (TA)n Simple_repeat Simple_repeat 2 125 0 2764 119 51 0 chr15 44158829 44159242 -57221279 - MER57B LTR ERV1 0 434 1 248 0 31 0 chr15 44159242 44159274 -57221247 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 329 235 40 7 chr15 44159736 44159885 -57220636 + (TA)n Simple_repeat Simple_repeat 2 155 0 215 31 31 0 chr15 44159950 44159982 -57220539 + (TG)n Simple_repeat Simple_repeat 2 34 0 2898 109 5 36 chr15 44159996 44160438 -57220083 - L1PB1 LINE L1 0 6151 5724 22 0 0 0 chr15 44161761 44161783 -57218738 + AT_rich Low_complexity Low_complexity 1 22 0 214 158 26 118 chr15 44163861 44163914 -57216607 + MIR3 SINE MIR 108 153 -55 690 200 38 60 chr15 44163914 44164099 -57216422 + MER5A DNA MER1_type 3 183 -6 374 141 28 0 chr15 44164527 44164598 -57215923 + CT-rich Low_complexity Low_complexity 3 75 0 1917 162 13 0 chr15 44164600 44164789 -57215732 - AluJb SINE Alu 0 312 116 270 0 0 0 chr15 44164789 44164819 -57215702 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1917 162 13 0 chr15 44164819 44164937 -57215584 - AluJb SINE Alu -196 116 1 21 0 0 0 chr15 44165440 44165461 -57215060 + AT_rich Low_complexity Low_complexity 1 21 0 299 344 33 8 chr15 44166884 44167006 -57213515 - MIR SINE MIR -65 143 19 1741 149 11 4 chr15 44167802 44168064 -57212457 + AluJb SINE Alu 1 264 -48 348 24 0 0 chr15 44168075 44168116 -57212405 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1002 220 5 5 chr15 44168278 44168464 -57212057 - MER5A DNA MER1_type -3 186 1 234 0 0 0 chr15 44168473 44168499 -57212022 + (T)n Simple_repeat Simple_repeat 1 26 0 499 263 150 19 chr15 44168952 44169112 -57211409 - MER5A DNA MER1_type 0 189 9 267 173 0 0 chr15 44169611 44169663 -57210858 + GA-rich Low_complexity Low_complexity 1 52 0 502 310 95 22 chr15 44170016 44170248 -57210273 - MIR SINE MIR -2 260 12 337 349 35 30 chr15 44170632 44170801 -57209720 + LTR67 LTR ERVL 31 200 -357 2341 101 0 7 chr15 44171803 44172110 -57208411 + AluSg SINE Alu 1 305 -5 197 274 10 88 chr15 44173522 44173624 -57206897 - MIR SINE MIR -25 237 144 398 288 144 0 chr15 44173883 44173994 -57206527 + MER5A DNA MER1_type 63 189 0 274 29 29 0 chr15 44174013 44174048 -57206473 - MLT1I LTR MaLR -3 406 371 22 0 0 0 chr15 44175299 44175321 -57205200 + AT_rich Low_complexity Low_complexity 1 22 0 269 155 17 0 chr15 44175321 44175379 -57205142 + (CA)n Simple_repeat Simple_repeat 2 60 0 230 195 117 13 chr15 44175545 44175622 -57204899 - MIR3 SINE MIR -23 185 101 217 222 101 0 chr15 44176753 44176824 -57203697 + MIR SINE MIR 114 193 -69 243 289 105 0 chr15 44176860 44176936 -57203585 + MIR SINE MIR 178 261 -1 589 258 64 61 chr15 44178050 44178345 -57202176 + LTR16A1 LTR ERVL 158 453 -4 240 320 124 0 chr15 44178456 44178553 -57201968 + L2 LINE L2 3128 3236 -36 236 192 260 0 chr15 44178647 44178720 -57201801 + MIR3 SINE MIR 112 203 -5 231 250 54 0 chr15 44178946 44179002 -57201519 - L2 LINE L2 -6 3307 3249 332 282 130 6 chr15 44179066 44179243 -57201278 - MIR SINE MIR -57 205 2 676 333 18 29 chr15 44180291 44180564 -57199957 - HAL1 LINE L1 -1783 724 455 368 304 95 12 chr15 44180732 44180900 -57199621 - HAL1 LINE L1 -2275 232 51 496 218 122 0 chr15 44181192 44181348 -57199173 + MIR SINE MIR 60 234 -28 185 192 58 19 chr15 44181319 44181371 -57199150 + L2 LINE L2 3251 3304 -9 * 422 318 140 0 chr15 44181886 44182065 -57198456 - L3 LINE CR1 -8 1569 1366 1079 190 25 10 chr15 44182297 44182497 -57198024 + MER20 DNA MER1_type 16 218 -1 214 384 8 24 chr15 44182504 44182629 -57197892 - L2 LINE L2 -226 3046 2924 198 329 138 24 chr15 44182685 44182852 -57197669 - L3 LINE CR1 -252 1325 1140 223 178 0 22 chr15 44184141 44184186 -57196335 + GA-rich Low_complexity Low_complexity 4 47 0 302 333 61 24 chr15 44184474 44184639 -57195882 - MER5B DNA MER1_type -7 171 1 384 292 53 0 chr15 44184757 44184870 -57195651 + MIR SINE MIR 28 146 -62 297 292 142 8 chr15 44186021 44186141 -57194380 + MIR SINE MIR 17 152 -56 250 200 12 118 chr15 44187191 44187276 -57193245 + L2 LINE L2 3235 3310 -3 509 333 157 33 chr15 44188181 44188999 -57191522 + L2 LINE L2 2349 3272 0 969 57 19 13 chr15 44189471 44189629 -57190892 + (TAGA)n Simple_repeat Simple_repeat 4 162 0 2030 198 8 16 chr15 44189984 44190352 -57190169 - MLT1A1 LTR MaLR 0 365 1 196 317 77 39 chr15 44190681 44190785 -57189736 - MIR SINE MIR -109 153 46 192 382 40 13 chr15 44190802 44190878 -57189643 - MIR3 SINE MIR -127 81 4 187 354 31 23 chr15 44192609 44192739 -57187782 - MIR SINE MIR -50 212 82 209 264 0 0 chr15 44194715 44194768 -57185753 - L2 LINE L2 -94 3219 3167 460 335 88 0 chr15 44194816 44194998 -57185523 - MIR SINE MIR -1 261 64 4715 149 16 34 chr15 44195080 44195268 -57185253 + L1MB8 LINE L1 5305 5495 -683 1713 191 0 16 chr15 44195268 44195571 -57184950 + AluJo SINE Alu 1 298 -14 4715 149 16 34 chr15 44195571 44195738 -57184783 + L1MB8 LINE L1 5495 5664 -514 2171 127 49 32 chr15 44195738 44196107 -57184414 + THE1C LTR MaLR 1 375 0 4715 149 16 34 chr15 44196107 44196634 -57183887 + L1MB8 LINE L1 5664 6172 -6 3194 115 44 78 chr15 44197290 44197822 -57182699 - Tigger3(Golem) DNA MER2_type 0 3029 2516 3715 66 0 0 chr15 44197822 44198262 -57182259 - L1PA7 LINE L1 -2 6152 5713 3194 115 44 78 chr15 44198262 44198322 -57182199 - Tigger3(Golem) DNA MER2_type -513 2516 2456 296 196 49 20 chr15 44198330 44198432 -57182089 + Zaphod DNA AcHobo 888 992 -3039 * 1890 186 51 35 chr15 44198429 44198858 -57181663 + Zaphod DNA AcHobo 3596 4031 0 300 351 56 82 chr15 44198904 44199223 -57181298 - L2 LINE L2 -19 3253 2943 206 339 56 44 chr15 44199258 44199509 -57181012 - L2 LINE L2 -468 2846 2593 3682 97 34 2 chr15 44199613 44200110 -57180411 + MER75 DNA T2_type 1 513 -1 617 355 92 28 chr15 44200154 44200580 -57179941 - L3 LINE CR1 -40 1537 1085 451 240 44 74 chr15 44200790 44200993 -57179528 + MIR SINE MIR 39 232 -30 482 118 94 0 chr15 44200997 44201082 -57179439 - MER53 DNA DNA 0 189 97 288 229 12 36 chr15 44201105 44201188 -57179333 + CT-rich Low_complexity Low_complexity 4 84 0 336 303 132 20 chr15 44201318 44201470 -57179051 + MIR SINE MIR 82 250 -12 2248 106 3 0 chr15 44204747 44205040 -57175481 - AluSp SINE Alu -19 294 1 532 297 113 5 chr15 44205662 44205847 -57174674 + MIR SINE MIR 25 229 -33 6662 150 47 3 chr15 44207905 44209229 -57171292 + L1MC1 LINE L1 4964 6332 -1 405 357 143 12 chr15 44210058 44210576 -57169945 - L2 LINE L2 -350 2964 2379 195 42 0 0 chr15 44211208 44211232 -57169289 + (TTG)n Simple_repeat Simple_repeat 3 26 0 396 275 140 42 chr15 44211242 44211478 -57169043 - MIR SINE MIR 0 262 4 263 244 128 12 chr15 44212956 44213042 -57167479 + MIR3 SINE MIR 77 172 -36 497 297 96 17 chr15 44213555 44213794 -57166727 - MIR SINE MIR -3 259 2 1015 275 55 50 chr15 44214172 44214690 -57165831 - MLT1G3 LTR MaLR -13 536 1 297 289 178 0 chr15 44214690 44214825 -57165696 + MIR SINE MIR 90 248 -14 180 0 0 0 chr15 44215368 44215388 -57165133 + (A)n Simple_repeat Simple_repeat 1 20 0 344 258 31 21 chr15 44216198 44216295 -57164226 - MIR SINE MIR -6 256 159 196 274 95 12 chr15 44218260 44218344 -57162177 - MIR SINE MIR -84 178 88 628 333 15 10 chr15 44218423 44218621 -57161900 - MIR SINE MIR -44 218 20 6430 75 0 0 chr15 44219096 44219907 -57160614 + L1PA8 LINE L1 5374 6184 0 336 115 0 0 chr15 44220060 44220112 -57160409 + L1MB1 LINE L1 6116 6167 -1 371 316 101 0 chr15 44220176 44220344 -57160177 + MIR SINE MIR 62 246 -16 228 219 0 0 chr15 44221147 44221188 -57159333 + MLT1I LTR MaLR 369 409 0 4468 154 15 24 chr15 44223560 44223733 -57156788 + L1P LINE L1 3432 3605 -2541 1814 45 0 58 chr15 44223733 44223975 -57156546 + L1PA4 LINE L1 5928 6155 0 4468 154 15 24 chr15 44223975 44224582 -57155939 + L1P LINE L1 3605 4205 -1941 561 220 200 13 chr15 44224686 44224836 -57155685 + MIR SINE MIR 77 254 -8 514 304 160 22 chr15 44225018 44225386 -57155135 + MLT1J2 LTR MaLR 1 419 -31 250 209 34 149 chr15 44225594 44225663 -57154858 + L1M3 LINE L1 4901 4946 -1200 2534 55 0 0 chr15 44225663 44225956 -57154565 - AluSc SINE Alu -16 293 1 250 209 34 149 chr15 44225956 44226034 -57154487 + L1M3 LINE L1 4946 5031 -1115 1917 168 5 45 chr15 44226047 44226422 -57154099 + L1M3 LINE L1 5308 5667 -513 861 268 99 47 chr15 44226948 44227180 -57153341 + MLT1H LTR MaLR 1 220 -329 1979 161 0 0 chr15 44227180 44227471 -57153050 + AluSx SINE Alu 5 295 -17 861 268 99 47 chr15 44227471 44227721 -57152800 + MLT1H LTR MaLR 220 549 0 274 332 37 74 chr15 44227851 44228041 -57152480 + MER5A DNA MER1_type 1 183 -6 192 375 98 0 chr15 44228049 44228161 -57152360 + L2 LINE L2 3150 3272 0 212 0 36 0 chr15 44229283 44229311 -57151210 + (CA)n Simple_repeat Simple_repeat 2 30 0 318 318 159 0 chr15 44229311 44229443 -57151078 - L1ME LINE L1 -462 5659 5507 532 280 106 5 chr15 44229769 44229958 -57150563 + MIR SINE MIR 49 256 -6 349 315 90 63 chr15 44230014 44230500 -57150021 - L1ME LINE L1 -1015 5131 4618 1056 298 79 33 chr15 44230500 44230930 -57149591 + LTR16A LTR ERVL 1 450 0 349 315 90 63 chr15 44230930 44231167 -57149354 - L1ME LINE L1 -1528 4618 4389 493 318 46 71 chr15 44231221 44231501 -57149020 + L3 LINE CR1 1266 1538 -39 836 254 18 0 chr15 44231859 44232028 -57148493 + MER58A DNA MER1_type 1 172 -52 323 378 31 0 chr15 44232066 44232193 -57148328 + MIR SINE MIR 6 136 -126 1071 273 135 16 chr15 44232254 44232573 -57147948 - LTR18A LTR ERVL 0 357 1 4230 144 65 1 chr15 44232574 44233220 -57147301 - HERVL18 LTR ERVL 0 6047 5361 2022 264 57 4 chr15 44233220 44233973 -57146548 + L1ME1 LINE L1 2846 3638 -2508 1624 191 71 45 chr15 44234120 44234502 -57146019 - MLT2B1 LTR ERVL -128 392 1 3525 206 95 47 chr15 44234509 44235694 -57144827 + L1ME1 LINE L1 4069 5310 -836 803 158 0 0 chr15 44235699 44235813 -57144708 + FLAM_C SINE Alu 5 118 -15 8778 69 0 1 chr15 44235813 44237670 -57142851 + L1PA7 LINE L1 4291 6148 -6 913 172 6 35 chr15 44237670 44237844 -57142677 + AluJb SINE Alu 134 302 -10 2858 221 84 27 chr15 44237845 44238596 -57141925 + L1ME1 LINE L1 5299 6092 -74 26 0 0 0 chr15 44238609 44238635 -57141886 + AT_rich Low_complexity Low_complexity 1 26 0 225 244 0 0 chr15 44238942 44238987 -57141534 - MIR SINE MIR -128 134 90 261 87 43 0 chr15 44238988 44239034 -57141487 + L1MC3 LINE L1 7738 7785 0 666 239 43 129 chr15 44239077 44239496 -57141025 + MLT1F-int LTR MaLR 982 1364 -7 1118 235 158 11 chr15 44239601 44239963 -57140558 + MLT1F LTR MaLR 128 542 0 207 186 0 0 chr15 44240716 44240759 -57139762 + (CAT)n Simple_repeat Simple_repeat 2 44 0 736 267 42 0 chr15 44240781 44240972 -57139549 - MIR SINE MIR -30 232 34 1531 202 13 23 chr15 44241849 44242156 -57138365 - MER58B DNA MER1_type -37 304 1 213 344 0 0 chr15 44242191 44242252 -57138269 + L2 LINE L2 3187 3247 -25 377 214 61 20 chr15 44243290 44243388 -57137133 + L2 LINE L2 3211 3312 -1 186 43 0 0 chr15 44244211 44244234 -57136287 + (A)n Simple_repeat Simple_repeat 1 23 0 1001 210 79 98 chr15 44244791 44245258 -57135263 + MLT1C LTR MaLR 2 459 -8 330 266 0 25 chr15 44248941 44249020 -57131501 - MER5A DNA MER1_type -40 149 73 599 261 152 13 chr15 44249125 44249355 -57131166 - MIR SINE MIR 0 262 1 205 268 42 0 chr15 44249475 44249546 -57130975 - MIR SINE MIR -128 134 61 3049 77 3 0 chr15 44251495 44251858 -57128663 + THE1B LTR MaLR 1 364 0 315 331 31 15 chr15 44252619 44252749 -57127772 + L2 LINE L2 3182 3313 0 266 300 0 22 chr15 44252999 44253089 -57127432 - L3 LINE CR1 -10 1567 1480 186 283 61 50 chr15 44254020 44254100 -57126421 + MIR SINE MIR 77 160 -102 2339 112 50 31 chr15 44254100 44254457 -57126064 - THE1B LTR MaLR 0 364 1 186 283 61 50 chr15 44254457 44254475 -57126046 + MIR SINE MIR 160 176 -86 2356 166 70 17 chr15 44254769 44255172 -57125349 - MSTB LTR MaLR -2 424 1 186 253 32 74 chr15 44256077 44256172 -57124349 + L3 LINE CR1 1412 1502 -75 279 299 248 0 chr15 44256699 44256856 -57123665 - MER91A DNA MER1_type 0 196 1 2119 138 0 0 chr15 44257098 44257395 -57123126 + AluSx SINE Alu 1 297 -15 186 167 0 0 chr15 44257805 44257841 -57122680 + T-rich Low_complexity Low_complexity 1 36 0 191 263 125 38 chr15 44258263 44258343 -57122178 - MIR SINE MIR -109 153 67 192 40 0 0 chr15 44259304 44259329 -57121192 + (GGAGA)n Simple_repeat Simple_repeat 1 25 0 2043 122 4 0 chr15 44259532 44259810 -57120711 + AluSp SINE Alu 3 281 -32 405 238 23 50 chr15 44260518 44260740 -57119781 + L1MD3 LINE L1 5290 7784 -196 23 54 0 0 chr15 44260740 44260777 -57119744 + AT_rich Low_complexity Low_complexity 1 37 0 533 327 118 2 chr15 44260961 44261390 -57119131 + L2 LINE L2 2580 3060 -212 343 302 9 28 chr15 44261420 44261526 -57118995 + L2 LINE L2 3165 3268 -4 293 286 44 0 chr15 44261530 44261621 -57118900 + L1ME LINE L1 5558 5652 -469 808 303 101 33 chr15 44262196 44262386 -57118135 - L1MC/D LINE L1 -775 5371 5195 2076 136 0 3 chr15 44262386 44262680 -57117841 + AluSx SINE Alu 1 293 -19 808 303 101 33 chr15 44262680 44263588 -57116933 - L1MC/D LINE L1 -951 5195 4542 211 354 133 29 chr15 44263815 44264227 -57116294 - L2 LINE L2 -815 2499 2045 2206 112 13 0 chr15 44264245 44264548 -57115973 + AluSp SINE Alu 7 313 0 605 333 0 0 chr15 44264645 44264819 -57115702 + MIR SINE MIR 34 207 -55 622 247 75 17 chr15 44265232 44265406 -57115115 - L1MC/D LINE L1 -2011 5797 5614 204 213 0 0 chr15 44268365 44268412 -57112109 + (CA)n Simple_repeat Simple_repeat 2 48 0 709 271 42 28 chr15 44268532 44268746 -57111775 + MIR SINE MIR 18 234 -28 814 293 19 0 chr15 44269043 44269258 -57111263 - LTR16C LTR ERVL -62 429 211 290 209 70 12 chr15 44269302 44269388 -57111133 - LTR16C LTR ERVL -364 127 37 1485 203 11 0 chr15 44269822 44270083 -57110438 + Tigger7 DNA MER2_type 1 264 -2223 712 121 0 0 chr15 44270083 44270182 -57110339 + Tigger7 DNA MER2_type 2393 2491 0 2291 84 3 0 chr15 44270298 44270602 -57109919 + AluY SINE Alu 1 305 0 904 230 72 5 chr15 44271453 44271662 -57108859 - MER58A DNA MER1_type -1 223 1 643 288 106 0 chr15 44272001 44272237 -57108284 + MIR SINE MIR 2 262 0 328 282 86 17 chr15 44273049 44273166 -57107355 - MER5B DNA MER1_type 0 178 54 2228 113 3 0 chr15 44273187 44273479 -57107042 - AluSx SINE Alu -19 293 1 941 239 77 8 chr15 44273482 44273741 -57106780 - L1ME3A LINE L1 -2 6168 5892 566 163 69 15 chr15 44273733 44273867 -57106654 - L1MC3 LINE L1 -1 7765 6224 * 800 210 5 107 chr15 44273879 44274127 -57106394 - L1ME3A LINE L1 -274 5896 5673 236 234 21 0 chr15 44274129 44274176 -57106345 - MER5B DNA MER1_type -129 49 2 305 226 78 70 chr15 44274577 44274692 -57105829 - L1ME3A LINE L1 -783 5381 5266 1707 199 24 53 chr15 44274912 44275189 -57105332 - MLT1C LTR MaLR -8 459 196 1907 215 19 31 chr15 44275189 44275608 -57104913 + MLT2D LTR ERVL 1 414 0 1707 199 24 53 chr15 44275608 44275748 -57104773 - MLT1C LTR MaLR -271 196 54 252 330 31 21 chr15 44276113 44276210 -57104311 + MIR SINE MIR 22 119 -143 267 377 108 0 chr15 44276795 44276925 -57103596 + L2 LINE L2 3116 3259 -13 23 33 0 0 chr15 44279413 44279443 -57101078 + AT_rich Low_complexity Low_complexity 1 30 0 624 244 146 5 chr15 44279717 44279922 -57100599 + MIR SINE MIR 28 261 -1 1391 216 82 18 chr15 44280091 44280434 -57100087 - MLT1A1 LTR MaLR 0 365 1 736 278 121 35 chr15 44283154 44283690 -57096831 - L1ME4a LINE L1 -19 6102 5521 241 372 40 40 chr15 44284031 44284257 -57096264 + L2 LINE L2 2836 3061 -211 326 387 0 15 chr15 44285246 44285383 -57095138 + MIR SINE MIR 8 142 -120 * 767 262 145 21 chr15 44285381 44285671 -57094850 + L2 LINE L2 2988 3313 0 414 306 32 8 chr15 44287605 44287729 -57092792 - L2 LINE L2 -5 3267 3141 1246 308 156 48 chr15 44287775 44289059 -57091462 + L2 LINE L2 709 2130 -1184 382 286 95 29 chr15 44289087 44289297 -57091224 - L2 LINE L2 -634 2680 2457 353 309 21 0 chr15 44289513 44289610 -57090911 + L2 LINE L2 3173 3271 -1 492 267 23 0 chr15 44289656 44289787 -57090734 + MIR SINE MIR 92 225 -37 29 28 0 0 chr15 44289805 44289841 -57090680 + AT_rich Low_complexity Low_complexity 1 36 0 745 263 163 8 chr15 44291000 44291380 -57089141 - LTR16A LTR ERVL -3 447 9 22 35 0 0 chr15 44292669 44292698 -57087823 + AT_rich Low_complexity Low_complexity 1 29 0 2436 115 29 35 chr15 44293829 44294204 -57086317 + MER83C LTR ERV1 1 373 0 415 309 32 8 chr15 44294277 44294403 -57086118 - L2 LINE L2 0 3313 3185 268 281 0 105 chr15 44294409 44294523 -57085998 + MIR SINE MIR 8 109 -153 351 284 99 6 chr15 44294559 44294721 -57085800 - MER5B DNA MER1_type 0 178 2 413 257 18 18 chr15 44295141 44295250 -57085271 - MIR3 SINE MIR -36 172 64 272 235 0 0 chr15 44295314 44295365 -57085156 - Tigger5 DNA MER2_type 0 2323 2273 2113 116 3 7 chr15 44296390 44296675 -57083846 + AluSx SINE Alu 1 284 -28 225 65 0 0 chr15 44296678 44296709 -57083812 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 899 330 73 27 chr15 44297001 44297783 -57082738 + HAL1b LINE L1 15 832 -516 29 28 0 0 chr15 44297902 44297938 -57082583 + AT_rich Low_complexity Low_complexity 1 36 0 354 91 0 0 chr15 44298109 44298164 -57082357 + (TG)n Simple_repeat Simple_repeat 2 56 0 2392 209 75 87 chr15 44298181 44298698 -57081823 + L1MC5 LINE L1 6646 7150 -811 3169 85 78 9 chr15 44298698 44299081 -57081440 + MLT2A2 LTR ERVL 1 417 -36 338 100 17 0 chr15 44299081 44299141 -57081380 + (TA)n Simple_repeat Simple_repeat 2 62 0 3169 85 78 9 chr15 44299141 44299181 -57081340 + MLT2A2 LTR ERVL 417 453 0 2392 209 75 87 chr15 44299181 44299553 -57080968 + L1MC5 LINE L1 7150 7525 -436 240 238 30 152 chr15 44299641 44299743 -57080778 + L1ME3A LINE L1 5961 6021 -149 3354 25 0 0 chr15 44299743 44300108 -57080413 - L1PA5 LINE L1 -8 6146 5782 240 238 30 152 chr15 44300108 44300236 -57080285 + L1ME3A LINE L1 6021 6163 -7 187 216 0 0 chr15 44300408 44300445 -57080076 - L2 LINE L2 -14 3299 3263 818 173 13 16 chr15 44301096 44301334 -57079187 + GA-rich Low_complexity Low_complexity 1 237 0 711 295 55 14 chr15 44301340 44301557 -57078964 - MIR SINE MIR -35 227 2 416 323 56 0 chr15 44301679 44301840 -57078681 + L2 LINE L2 2490 2659 -655 236 218 11 115 chr15 44304361 44304448 -57076073 + L2 LINE L2 3231 3308 -5 22 0 0 0 chr15 44304448 44304470 -57076051 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr15 44304543 44304588 -57075933 + AT_rich Low_complexity Low_complexity 1 45 0 562 203 104 126 chr15 44304608 44305100 -57075421 - L1ME4a LINE L1 -59 6062 5533 408 254 139 48 chr15 44305169 44305527 -57074994 - L1ME4a LINE L1 -743 5403 5039 25 0 0 0 chr15 44305535 44305560 -57074961 + AT_rich Low_complexity Low_complexity 1 25 0 24 77 0 0 chr15 44306537 44306589 -57073932 + AT_rich Low_complexity Low_complexity 1 52 0 371 314 50 0 chr15 44306589 44306710 -57073811 - MIR SINE MIR -58 204 78 870 295 8 0 chr15 44308319 44308560 -57071961 + MIR SINE MIR 18 260 -2 2011 127 3 16 chr15 44308828 44309136 -57071385 + AluSx SINE Alu 1 304 -8 49 34 0 34 chr15 44309232 44309321 -57071200 + AT_rich Low_complexity Low_complexity 1 86 0 26 50 0 0 chr15 44309679 44309719 -57070802 + AT_rich Low_complexity Low_complexity 1 40 0 282 296 11 11 chr15 44310191 44310279 -57070242 + MIR SINE MIR 16 103 -105 736 239 98 17 chr15 44310613 44310847 -57069674 + MARNA DNA Mariner 145 397 -189 25 31 0 0 chr15 44311020 44311052 -57069469 + AT_rich Low_complexity Low_complexity 1 32 0 335 257 178 6 chr15 44311123 44311269 -57069252 - MIR3 SINE MIR -36 172 3 235 298 84 53 chr15 44312190 44312321 -57068200 + MIR3 SINE MIR 9 143 -65 212 321 25 0 chr15 44312517 44312598 -57067923 + (TATG)n Simple_repeat Simple_repeat 3 85 0 2086 127 109 15 chr15 44312633 44313028 -57067493 + MSTB1 LTR MaLR 1 432 0 1035 320 90 6 chr15 44313305 44313825 -57066696 + L2 LINE L2 2751 3312 -1 401 259 124 51 chr15 44313843 44314191 -57066330 - MLT1F1 LTR MaLR -29 538 158 206 350 67 0 chr15 44314510 44314570 -57065951 + MIR SINE MIR 43 106 -102 22 0 0 0 chr15 44317563 44317585 -57062936 + AT_rich Low_complexity Low_complexity 1 22 0 210 274 244 36 chr15 44318313 44318481 -57062040 - L2 LINE L2 -1 3312 3110 208 139 0 0 chr15 44320811 44320847 -57059674 + (A)n Simple_repeat Simple_repeat 1 36 0 682 218 8 23 chr15 44321186 44321319 -57059202 + MER58B DNA MER1_type 211 341 0 2391 80 0 10 chr15 44322589 44322902 -57057619 + AluSg SINE Alu 1 310 0 27 0 0 0 chr15 44323107 44323134 -57057387 + AT_rich Low_complexity Low_complexity 1 27 0 34 42 0 0 chr15 44324452 44324500 -57056021 + AT_rich Low_complexity Low_complexity 1 48 0 475 256 8 16 chr15 44325149 44325278 -57055243 + MER94 DNA DNA 5 132 -2 244 353 26 26 chr15 44329063 44329179 -57051342 + L2 LINE L2 3197 3312 -1 215 216 0 0 chr15 44330724 44330761 -57049760 + polypurine Low_complexity Low_complexity 5 41 0 36 40 0 0 chr15 44330786 44330836 -57049685 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr15 44331779 44331800 -57048721 + AT_rich Low_complexity Low_complexity 1 21 0 1553 190 116 19 chr15 44334190 44334663 -57045858 + Charlie1b DNA MER1_type 1 519 -4 26 0 0 0 chr15 44335665 44335691 -57044830 + AT_rich Low_complexity Low_complexity 1 26 0 248 254 105 39 chr15 44335827 44336008 -57044513 + L1ME4a LINE L1 1476 1668 -4728 378 283 108 26 chr15 44336491 44336869 -57043652 + L1ME4a LINE L1 2343 2751 -3464 418 247 113 34 chr15 44337098 44337337 -57043184 + L1ME4a LINE L1 5695 5952 -238 281 247 67 22 chr15 44337374 44337463 -57043058 + L1ME4a LINE L1 6025 6117 -73 221 231 0 0 chr15 44339158 44339197 -57041324 + (TG)n Simple_repeat Simple_repeat 2 40 0 315 49 0 0 chr15 44340212 44340253 -57040268 + (CA)n Simple_repeat Simple_repeat 2 42 0 181 182 36 0 chr15 44340839 44340894 -57039627 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 26 0 0 0 chr15 44340898 44340924 -57039597 + AT_rich Low_complexity Low_complexity 1 26 0 503 248 47 8 chr15 44342454 44342583 -57037938 - MIR SINE MIR -48 214 81 428 264 77 26 chr15 44342602 44342659 -57037862 - MIR SINE MIR -49 213 160 13986 118 38 54 chr15 44342659 44345115 -57035406 + Tigger1 DNA MER2_type 2 2417 -1 428 264 77 26 chr15 44345115 44345212 -57035309 - MIR SINE MIR -102 160 51 23 0 0 0 chr15 44347791 44347814 -57032707 + AT_rich Low_complexity Low_complexity 1 23 0 2275 88 3 3 chr15 44349453 44349748 -57030773 - AluSg1 SINE Alu -14 295 1 2176 102 0 0 chr15 44349963 44350279 -57030242 - AluSx SINE Alu 0 316 1 250 298 0 36 chr15 44350379 44350463 -57030058 + MER5B DNA MER1_type 95 175 -3 24 32 0 0 chr15 44351300 44351331 -57029190 + AT_rich Low_complexity Low_complexity 1 31 0 10207 167 49 26 chr15 44351921 44351971 -57028550 + L1MA9 LINE L1 2995 3042 -3270 1967 158 0 3 chr15 44351971 44352275 -57028246 + AluSx SINE Alu 1 303 -9 10207 167 49 26 chr15 44352275 44355468 -57025053 + L1MA9 LINE L1 3042 6307 -5 207 0 0 0 chr15 44356073 44356096 -57024425 + (A)n Simple_repeat Simple_repeat 1 23 0 339 65 0 0 chr15 44359259 44359305 -57021216 + (CA)n Simple_repeat Simple_repeat 1 46 0 397 268 96 18 chr15 44359393 44359557 -57020964 + MIR SINE MIR 17 191 -71 236 170 189 0 chr15 44359950 44360003 -57020518 - MER58A DNA MER1_type -38 69 7 425 206 165 0 chr15 44360003 44360100 -57020421 + MER96B DNA MER1_type? 305 417 0 2144 82 4 0 chr15 44360348 44360663 -57019858 - AluY SINE Alu 0 316 1 1026 245 139 44 chr15 44360959 44361391 -57019130 - MLT1J LTR MaLR 0 511 39 197 178 22 0 chr15 44361936 44361981 -57018540 + CT-rich Low_complexity Low_complexity 1 46 0 318 240 114 40 chr15 44363113 44363288 -57017233 - MER95 LTR ERV -4 427 240 4912 172 31 7 chr15 44364279 44365318 -57015203 + L1MC2 LINE L1 5186 6331 -13 2212 99 0 35 chr15 44366473 44366786 -57013735 + AluSg SINE Alu 1 302 -8 211 281 88 0 chr15 44368859 44368916 -57011605 + L2 LINE L2 3162 3223 -49 2249 120 0 0 chr15 44369691 44369999 -57010522 - AluSx SINE Alu -4 308 1 449 275 161 7 chr15 44370017 44370166 -57010355 + MER5A DNA MER1_type 18 189 0 246 105 0 0 chr15 44370732 44370770 -57009751 + (CTTTG)n Simple_repeat Simple_repeat 2 39 0 24 32 0 0 chr15 44374822 44374853 -57005668 + AT_rich Low_complexity Low_complexity 1 31 0 359 276 41 8 chr15 44375132 44375255 -57005266 - L3 LINE CR1 -260 1317 1191 329 380 75 21 chr15 44375449 44375728 -57004793 + L2 LINE L2 2323 2616 -698 229 340 142 7 chr15 44376082 44376223 -57004298 + MIR SINE MIR 97 256 -6 1365 335 120 20 chr15 44376403 44377269 -57003252 - L3 LINE CR1 -505 1072 120 846 295 29 70 chr15 44377550 44377964 -57002557 + L2 LINE L2 2917 3313 0 208 220 0 40 chr15 44378760 44378810 -57001711 - L2 LINE L2 -5 3308 3261 1356 307 32 2 chr15 44379315 44379719 -57000802 - LTR16A LTR ERVL 0 450 35 22 70 0 0 chr15 44380647 44380690 -56999831 + AT_rich Low_complexity Low_complexity 1 43 0 236 327 88 18 chr15 44382606 44382719 -56997802 + MIR3 SINE MIR 5 125 -83 237 268 37 85 chr15 44382833 44382915 -56997606 + MIR SINE MIR 29 106 -102 217 339 16 74 chr15 44383112 44383233 -56997288 + MIR3 SINE MIR 87 200 -8 463 300 25 80 chr15 44383360 44383560 -56996961 - MIR SINE MIR -66 196 8 861 232 18 36 chr15 44385299 44385519 -56995002 - MIR SINE MIR -43 219 4 1938 152 0 10 chr15 44385814 44386110 -56994411 + AluSx SINE Alu 2 294 -18 1846 155 40 10 chr15 44388293 44388589 -56991932 - AluJo SINE Alu -7 305 1 2282 85 0 17 chr15 44389050 44389344 -56991177 - AluSp SINE Alu -24 289 1 224 226 38 0 chr15 44390062 44390115 -56990406 + A-rich Low_complexity Low_complexity 4 58 0 1708 150 14 37 chr15 44390552 44390846 -56989675 + AluSq SINE Alu 3 289 -24 1854 152 10 35 chr15 44391442 44391752 -56988769 + AluSq SINE Alu 3 304 -9 21 0 0 0 chr15 44391906 44391927 -56988594 + AT_rich Low_complexity Low_complexity 1 21 0 27 87 0 0 chr15 44393030 44393099 -56987422 + AT_rich Low_complexity Low_complexity 1 69 0 480 267 48 24 chr15 44393783 44394057 -56986464 - MIR SINE MIR 0 262 20 2289 82 24 0 chr15 44394369 44394538 -56985983 - AluY SINE Alu -10 301 121 182 0 107 0 chr15 44394538 44394566 -56985955 + T-rich Low_complexity Low_complexity 5 35 0 2289 82 24 0 chr15 44394566 44394690 -56985831 - AluY SINE Alu -190 121 1 180 0 0 0 chr15 44395140 44395160 -56985361 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 378 250 20 40 chr15 44395591 44395743 -56984778 + L1MC5 LINE L1 7758 7906 -55 22 0 0 0 chr15 44396073 44396095 -56984426 + AT_rich Low_complexity Low_complexity 1 22 0 1245 154 23 0 chr15 44397798 44398019 -56982502 + MER33 DNA MER1_type 1 226 -98 1920 166 0 10 chr15 44398674 44398976 -56981545 - AluJb SINE Alu -13 299 1 182 310 35 0 chr15 44398977 44399035 -56981486 - L2 LINE L2 -8 3264 3205 1898 137 6 44 chr15 44400129 44400450 -56980071 + AluSc SINE Alu 1 309 0 511 80 45 0 chr15 44400458 44400546 -56979975 + GA-rich Low_complexity Low_complexity 1 92 0 822 150 0 0 chr15 44400637 44400770 -56979751 + AluJo/FLAM SINE Alu 1 133 -169 282 81 0 0 chr15 44400770 44400807 -56979714 + AluSg/x SINE Alu 131 167 -133 1335 122 0 5 chr15 44400807 44400995 -56979526 + AluSg/x SINE Alu 116 302 -10 492 18 0 0 chr15 44400995 44401052 -56979469 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 41 0 0 0 chr15 44403316 44403357 -56977164 + AT_rich Low_complexity Low_complexity 1 41 0 189 74 0 0 chr15 44403454 44403481 -56977040 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 193 340 50 0 chr15 44403928 44404028 -56976493 + MIR SINE MIR 83 187 -75 382 304 107 36 chr15 44404083 44404251 -56976270 - MER5A DNA MER1_type -3 186 7 1577 222 75 53 chr15 44405137 44405682 -56974839 - MER34B LTR ERV1 0 565 9 193 288 15 30 chr15 44405931 44405997 -56974524 - MIR SINE MIR -3 259 195 713 176 17 0 chr15 44406312 44406431 -56974090 + FLAM_A SINE Alu 1 121 -12 180 269 0 96 chr15 44408996 44409048 -56971473 + L3 LINE CR1 1022 1068 -509 228 200 20 0 chr15 44409418 44409468 -56971053 + (TA)n Simple_repeat Simple_repeat 1 51 0 215 157 20 0 chr15 44409568 44409619 -56970902 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr15 44409696 44409718 -56970803 + AT_rich Low_complexity Low_complexity 1 22 0 445 363 15 25 chr15 44410304 44410505 -56970016 + MIR SINE MIR 8 206 -56 395 261 85 26 chr15 44412074 44412227 -56968294 - L2 LINE L2 0 3313 3152 672 251 68 0 chr15 44412335 44412498 -56968023 + MIR SINE MIR 2 175 -87 2231 107 17 0 chr15 44412603 44412903 -56967618 + AluSg SINE Alu 1 305 -5 328 315 86 31 chr15 44412920 44413082 -56967439 - L2 LINE L2 -219 3053 2883 343 326 101 17 chr15 44414017 44414195 -56966326 + MIR SINE MIR 20 212 -50 365 323 0 12 chr15 44414643 44414807 -56965714 + T-rich Low_complexity Low_complexity 2 163 0 216 263 42 0 chr15 44415014 44415109 -56965412 + (TG)n Simple_repeat Simple_repeat 1 99 0 2280 75 0 33 chr15 44415328 44415633 -56964888 + AluSx SINE Alu 1 295 -17 180 125 0 0 chr15 44416214 44416246 -56964275 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 780 178 0 22 chr15 44416392 44416527 -56963994 + FLAM_A SINE Alu 1 132 -1 25 0 0 0 chr15 44416567 44416592 -56963929 + AT_rich Low_complexity Low_complexity 1 25 0 752 245 10 20 chr15 44416759 44416959 -56963562 - MLT1J LTR MaLR -307 204 7 384 22 0 0 chr15 44416960 44417005 -56963516 + (CA)n Simple_repeat Simple_repeat 2 46 0 247 318 36 27 chr15 44417161 44417271 -56963250 - L2 LINE L2 -217 3055 2945 400 216 189 27 chr15 44417395 44417506 -56963015 + L2 LINE L2 3185 3313 0 193 306 0 0 chr15 44417586 44417635 -56962886 - MIR SINE MIR -139 123 75 448 339 132 32 chr15 44417830 44418140 -56962381 - L2 LINE L2 -21 3251 2911 29 28 0 0 chr15 44418185 44418221 -56962300 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr15 44418489 44418525 -56961996 + AT_rich Low_complexity Low_complexity 1 36 0 247 315 38 102 chr15 44418611 44418846 -56961675 - L2 LINE L2 -531 2783 2564 406 251 131 27 chr15 44418898 44419081 -56961440 + MER112 DNA MER1_type 12 213 -47 197 318 171 29 chr15 44419093 44419439 -56961082 - L2 LINE L2 -941 2373 1979 1691 175 3 14 chr15 44420097 44420417 -56960104 + AluJb SINE Alu 1 317 0 2168 114 0 0 chr15 44420528 44420818 -56959703 - AluSx SINE Alu -22 290 1 853 101 14 0 chr15 44420878 44421026 -56959495 + (TA)n Simple_repeat Simple_repeat 2 151 0 22 0 0 0 chr15 44421607 44421629 -56958892 + AT_rich Low_complexity Low_complexity 1 22 0 1734 187 3 0 chr15 44423388 44423682 -56956839 + AluJo SINE Alu 1 295 -17 306 315 87 7 chr15 44424053 44424202 -56956319 + L3 LINE CR1 1353 1513 -64 2214 104 3 0 chr15 44424243 44424550 -56955971 + AluSg1 SINE Alu 1 308 -1 353 250 257 7 chr15 44424864 44425012 -56955509 + L1ME LINE L1 5582 5766 -355 3437 125 13 47 chr15 44426113 44426730 -56953791 - L1PA16 LINE L1 -9 6157 5562 22 0 0 0 chr15 44427332 44427354 -56953167 + AT_rich Low_complexity Low_complexity 1 22 0 2152 112 10 0 chr15 44427366 44427669 -56952852 + AluSx SINE Alu 1 306 -6 359 272 72 33 chr15 44428672 44428852 -56951669 + MER5A DNA MER1_type 2 188 -1 22 0 0 0 chr15 44429188 44429210 -56951311 + AT_rich Low_complexity Low_complexity 1 22 0 1873 144 14 3 chr15 44429628 44429912 -56950609 + AluSq SINE Alu 1 287 -26 21 0 0 0 chr15 44429912 44429933 -56950588 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr15 44431544 44431575 -56948946 + (CA)n Simple_repeat Simple_repeat 1 31 0 2367 95 7 0 chr15 44432790 44433095 -56947426 + AluSq SINE Alu 1 307 -6 343 219 337 0 chr15 44433096 44433255 -56947266 - MIR SINE MIR 0 262 52 219 256 0 0 chr15 44433324 44433363 -56947158 - L2 LINE L2 -79 3193 3155 196 302 0 0 chr15 44433501 44433554 -56946967 + L2 LINE L2 3261 3313 0 21 0 0 0 chr15 44433564 44433585 -56946936 + AT_rich Low_complexity Low_complexity 1 21 0 3147 211 90 10 chr15 44434068 44435212 -56945309 - L1ME1 LINE L1 -15 6151 4923 342 0 0 0 chr15 44435460 44435498 -56945023 + (A)n Simple_repeat Simple_repeat 1 38 0 2422 53 0 10 chr15 44435507 44435806 -56944715 + AluY SINE Alu 1 296 -15 2270 116 0 0 chr15 44436025 44436327 -56944194 + AluSc SINE Alu 1 302 -7 2598 106 3 16 chr15 44437309 44437678 -56942843 - THE1B LTR MaLR 0 364 1 10635 84 38 46 chr15 44437678 44438947 -56941574 - THE1B-int LTR MaLR 0 1580 324 2869 0 0 0 chr15 44438947 44439254 -56941267 + AluYa5 SINE Alu 1 307 -4 10635 84 38 46 chr15 44439254 44439574 -56940947 - THE1B-int LTR MaLR -1256 324 3 948 137 7 15 chr15 44439574 44439829 -56940692 - THE1B LTR MaLR -5 359 1 261 299 91 47 chr15 44440365 44440663 -56939858 + L3b LINE CR1 1107 1417 -166 24 0 0 0 chr15 44440827 44440851 -56939670 + AT_rich Low_complexity Low_complexity 1 24 0 2015 118 11 0 chr15 44440857 44441127 -56939394 + AluSx SINE Alu 5 277 -35 252 0 0 0 chr15 44441127 44441155 -56939366 + (TAA)n Simple_repeat Simple_repeat 3 30 0 315 0 0 0 chr15 44441216 44441251 -56939270 + (CA)n Simple_repeat Simple_repeat 1 35 0 413 314 14 67 chr15 44441290 44441500 -56939021 - MIR SINE MIR -18 244 46 684 325 8 17 chr15 44442656 44442896 -56937625 + MIR SINE MIR 25 262 0 338 192 14 0 chr15 44444338 44444411 -56936110 - MER116 DNA Mariner 0 80 7 1820 162 14 0 chr15 44444551 44444856 -56935665 - AluJo SINE Alu 0 309 1 313 266 92 58 chr15 44446639 44446677 -56933844 - MIR3 SINE MIR -13 195 160 1390 172 32 3 chr15 44446677 44446985 -56933536 - MER33 DNA MER1_type -4 320 4 313 266 92 58 chr15 44446985 44447119 -56933402 - MIR3 SINE MIR -48 160 17 316 258 0 54 chr15 44447378 44447471 -56933050 + MER5A DNA MER1_type 9 96 -93 22 70 0 0 chr15 44449678 44449721 -56930800 + AT_rich Low_complexity Low_complexity 1 43 0 575 305 25 15 chr15 44451229 44451432 -56929089 - MIR SINE MIR -55 207 3 28 29 0 0 chr15 44451462 44451497 -56929024 + AT_rich Low_complexity Low_complexity 1 35 0 195 205 34 17 chr15 44451515 44451632 -56928889 + (TA)n Simple_repeat Simple_repeat 2 120 0 2230 93 42 0 chr15 44451789 44452078 -56928443 + AluSq SINE Alu 3 303 -10 2033 137 3 3 chr15 44453264 44453572 -56926949 - AluSx SINE Alu 0 308 1 1555 163 121 69 chr15 44453603 44453671 -56926850 - MLT1D LTR MaLR 0 505 442 2008 139 24 0 chr15 44453671 44453966 -56926555 + AluSx SINE Alu 1 302 -10 1555 163 121 69 chr15 44453966 44454377 -56926144 - MLT1D LTR MaLR -63 442 1 554 174 87 9 chr15 44455511 44455626 -56924895 - L2 LINE L2 -1 3312 3189 1253 351 106 34 chr15 44456172 44457167 -56923354 - L2 LINE L2 -12 3260 2072 2364 128 26 10 chr15 44457167 44457551 -56922970 + MLT1B LTR MaLR 1 390 0 1253 351 106 34 chr15 44457551 44458242 -56922279 - L2 LINE L2 -1200 2072 1433 767 40 0 0 chr15 44459005 44459104 -56921417 + AluY SINE Alu 198 296 -15 538 247 147 6 chr15 44459107 44459277 -56921244 - MIR SINE MIR -18 244 51 203 246 0 0 chr15 44461356 44461417 -56919104 + CT-rich Low_complexity Low_complexity 1 61 0 222 37 0 0 chr15 44461682 44461709 -56918812 + (CA)n Simple_repeat Simple_repeat 1 27 0 885 275 16 8 chr15 44461911 44462162 -56918359 + MIR SINE MIR 6 258 -4 447 227 126 33 chr15 44462398 44462580 -56917941 + MIR SINE MIR 15 212 -50 415 235 188 20 chr15 44463766 44463915 -56916606 + MIR SINE MIR 76 249 -13 365 296 23 0 chr15 44464119 44464207 -56916314 - MIR SINE MIR -116 146 57 1770 175 31 0 chr15 44465485 44465776 -56914745 - AluJb SINE Alu -12 300 1 370 279 47 28 chr15 44469767 44469938 -56910583 + MIR3 SINE MIR 3 177 -31 320 77 19 0 chr15 44470240 44470292 -56910229 + (TA)n Simple_repeat Simple_repeat 1 53 0 6698 107 55 32 chr15 44470366 44471543 -56908978 - Tigger3b DNA MER2_type -27 1204 1 829 210 45 104 chr15 44471714 44472071 -56908450 + L1MC4 LINE L1 7702 8037 -5 264 184 55 18 chr15 44472093 44472202 -56908319 + (TA)n Simple_repeat Simple_repeat 1 113 0 1598 196 32 40 chr15 44473362 44473739 -56906782 - MLT1A2 LTR MaLR 0 374 1 1642 195 25 0 chr15 44473765 44474047 -56906474 - AluJb SINE Alu -22 290 2 25 0 0 0 chr15 44474131 44474156 -56906365 + AT_rich Low_complexity Low_complexity 1 25 0 1871 144 27 7 chr15 44474607 44474905 -56905616 + AluJb SINE Alu 6 309 -3 2184 123 7 0 chr15 44474907 44475217 -56905304 + AluSx SINE Alu 1 312 0 1763 174 7 3 chr15 44475730 44476050 -56904471 - AluJo SINE Alu 0 312 1 492 256 7 29 chr15 44476845 44476982 -56903539 - MER91A DNA MER1_type -36 160 27 23 54 0 0 chr15 44477516 44477553 -56902968 + AT_rich Low_complexity Low_complexity 1 37 0 295 221 58 0 chr15 44477790 44477876 -56902645 - MLT1L LTR MaLR 0 615 525 1652 179 27 7 chr15 44480890 44481191 -56899330 + AluJo SINE Alu 1 307 -5 345 319 0 35 chr15 44482834 44482947 -56897574 + L3 LINE CR1 1455 1563 -14 2865 10 0 0 chr15 44483179 44483491 -56897030 + AluYb8 SINE Alu 1 312 -6 202 241 35 35 chr15 44484087 44484145 -56896376 + L2 LINE L2 3205 3262 -10 195 273 61 0 chr15 44485260 44485326 -56895195 - L2 LINE L2 -566 2748 2679 924 250 143 41 chr15 44485338 44485730 -56894791 - LTR16A LTR ERVL 0 450 19 26 0 0 0 chr15 44486306 44486332 -56894189 + AT_rich Low_complexity Low_complexity 1 26 0 1623 204 3 14 chr15 44486332 44486621 -56893900 - AluJo SINE Alu -26 286 1 308 286 18 51 chr15 44486626 44486735 -56893786 + MER5A DNA MER1_type 40 143 -35 291 364 29 29 chr15 44486757 44486897 -56893624 + L2 LINE L2 2181 2320 -994 1939 135 44 0 chr15 44486966 44487262 -56893259 - AluSx SINE Alu -3 309 1 533 83 0 0 chr15 44487306 44487378 -56893143 + Alu SINE Alu 226 297 -13 354 281 85 53 chr15 44488073 44488319 -56892202 + L1 LINE L1 2257 2510 -3636 2172 134 3 6 chr15 44488337 44488651 -56891870 - AluSq SINE Alu 0 313 1 572 304 69 24 chr15 44488759 44489134 -56891387 + L1 LINE L1 2662 3053 -3093 402 338 56 43 chr15 44489207 44489441 -56891080 + MIR SINE MIR 8 244 -18 315 314 47 6 chr15 44489916 44490088 -56890433 + L1 LINE L1 3621 3799 -2347 207 0 0 0 chr15 44490773 44490796 -56889725 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 1510 173 14 38 chr15 44490799 44491088 -56889433 - AluJo SINE Alu -30 282 1 595 183 0 0 chr15 44491263 44491367 -56889154 - MLT1E1 LTR MaLR 0 654 551 257 0 30 0 chr15 44491371 44491404 -56889117 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 825 133 8 0 chr15 44491404 44491524 -56888997 - FLAM_C SINE Alu -22 121 1 983 190 87 72 chr15 44491525 44491796 -56888725 - MLT1E1 LTR MaLR -100 554 214 2223 120 0 3 chr15 44491796 44492104 -56888417 + AluSx SINE Alu 1 307 -5 983 190 87 72 chr15 44492104 44492268 -56888253 - MLT1E1 LTR MaLR -440 214 54 1951 138 0 63 chr15 44493467 44493800 -56886721 + AluJb SINE Alu 1 312 0 1493 254 114 85 chr15 44493924 44494883 -56885638 + L2 LINE L2 2327 3313 0 2182 127 17 0 chr15 44495082 44495382 -56885139 - AluSx SINE Alu -7 305 1 2056 102 14 3 chr15 44495388 44495681 -56884840 - AluSg SINE Alu -14 296 1 181 259 206 23 chr15 44495823 44495954 -56884567 - L2 LINE L2 -47 3266 3112 444 185 27 68 chr15 44496190 44496336 -56884185 - LTR1B LTR ERV1 -344 482 343 399 266 108 21 chr15 44496374 44496587 -56883934 - LTR1 LTR ERV1 -564 221 28 1494 216 127 20 chr15 44496676 44497079 -56883442 + MER92C LTR ERV1 1 446 -108 2163 130 0 7 chr15 44497079 44497387 -56883134 + AluSx SINE Alu 1 306 -6 1849 195 41 57 chr15 44497417 44497582 -56882939 + MLT1D LTR MaLR 1 167 -338 835 121 38 8 chr15 44497582 44497739 -56882782 - L1PA10 LINE L1 0 6168 6032 1849 195 41 57 chr15 44497739 44498086 -56882435 + MLT1D LTR MaLR 167 505 0 399 161 37 12 chr15 44498091 44498172 -56882349 + MER92C LTR ERV1 470 552 -2 424 304 176 2 chr15 44498172 44498403 -56882118 - L2 LINE L2 -312 3001 2732 2226 114 0 3 chr15 44498444 44498751 -56881770 + AluSc SINE Alu 1 306 -3 484 271 11 43 chr15 44498868 44499056 -56881465 - LTR33 LTR ERVL -11 510 329 490 318 6 6 chr15 44499128 44499304 -56881217 - LTR33 LTR ERVL -333 188 13 1901 204 22 32 chr15 44500892 44501396 -56879125 + MLT1D LTR MaLR 1 499 -6 1727 63 0 30 chr15 44501999 44502236 -56878285 - AluY SINE Alu -3 308 79 3376 112 10 51 chr15 44502370 44502517 -56878004 - Tigger4(Zombi) DNA MER2_type 0 2731 2580 2899 9 0 0 chr15 44502517 44502833 -56877688 - AluYb8 SINE Alu -2 316 1 3376 112 10 51 chr15 44502833 44503273 -56877248 - Tigger4(Zombi) DNA MER2_type -151 2580 2168 803 169 56 0 chr15 44503275 44503435 -56877086 - Tigger4(Zombi) DNA MER2_type -2559 172 4 333 229 76 9 chr15 44504094 44504199 -56876322 - MER103 DNA DNA -1 165 54 1714 181 0 23 chr15 44504420 44504719 -56875802 - AluJb SINE Alu -20 292 1 752 216 44 5 chr15 44505159 44505477 -56875044 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr15 44506378 44506399 -56874122 + AT_rich Low_complexity Low_complexity 1 21 0 654 80 44 53 chr15 44506399 44506512 -56874009 - HY1 scRNA scRNA 0 112 1 2169 131 0 13 chr15 44506882 44507194 -56873327 - AluSx SINE Alu -4 308 1 1151 241 153 38 chr15 44507686 44508216 -56872305 + Charlie2 DNA MER1_type 1 591 -2271 25 0 0 0 chr15 44508551 44508576 -56871945 + AT_rich Low_complexity Low_complexity 1 25 0 311 241 105 43 chr15 44508701 44508863 -56871658 - L2 LINE L2 -100 3213 3042 204 192 370 41 chr15 44508864 44509010 -56871511 - L2 LINE L2 -1148 2166 1973 1163 172 180 16 chr15 44509100 44509344 -56871177 + AluJb SINE Alu 1 284 -18 759 265 35 48 chr15 44509402 44509580 -56870941 + MIR SINE MIR 9 188 -74 1920 137 0 20 chr15 44509580 44509879 -56870642 - AluJo SINE Alu -19 293 1 2445 76 3 0 chr15 44509881 44510185 -56870336 - AluSp SINE Alu -8 305 1 759 265 35 48 chr15 44510185 44510233 -56870288 + MIR SINE MIR 189 235 -27 2137 61 71 0 chr15 44510422 44510702 -56869819 + AluSp SINE Alu 1 300 -13 250 326 0 0 chr15 44511245 44511343 -56869178 + HAL1 LINE L1 1634 1731 -776 207 298 0 0 chr15 44511394 44511451 -56869070 - L2 LINE L2 -1062 2252 2196 21 0 0 0 chr15 44512727 44512748 -56867773 + GC_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr15 44513198 44513233 -56867288 + GC_rich Low_complexity Low_complexity 1 35 0 198 324 0 27 chr15 44513757 44513831 -56866690 - MIR SINE MIR -43 219 148 181 271 0 42 chr15 44514009 44514057 -56866464 + MER5B DNA MER1_type 111 156 -22 437 226 0 0 chr15 44514732 44514825 -56865696 + MIR SINE MIR 170 262 0 223 304 95 19 chr15 44516428 44516586 -56863935 + L2 LINE L2 1656 1825 -1489 529 265 158 10 chr15 44518193 44518389 -56862132 + MIR SINE MIR 11 235 -27 540 285 61 57 chr15 44519273 44519586 -56860935 + L1ME LINE L1 5285 5600 -521 1338 196 83 4 chr15 44519695 44519971 -56860550 + AluJo SINE Alu 1 298 -14 283 357 89 13 chr15 44520221 44520445 -56860076 - L3b LINE CR1 -84 1499 1259 702 156 89 45 chr15 44521087 44521304 -56859217 + L1MB8 LINE L1 5959 6178 0 289 208 0 0 chr15 44524098 44524146 -56856375 - MER112 DNA MER1_type -35 225 178 214 208 75 45 chr15 44524418 44524492 -56856029 - MIR SINE MIR -63 145 75 919 209 166 25 chr15 44524492 44524812 -56855709 - MLT1A1 LTR MaLR 0 365 1 214 208 75 45 chr15 44524812 44524876 -56855645 - MIR SINE MIR -133 75 2 2186 104 3 3 chr15 44525149 44525437 -56855084 + AluSx SINE Alu 1 288 -24 483 238 125 102 chr15 44525698 44526051 -56854470 - L1ME3A LINE L1 -34 6119 5759 454 272 46 51 chr15 44526064 44526259 -56854262 - L1ME3A LINE L1 -2346 3783 3590 314 157 0 29 chr15 44526273 44526343 -56854178 + C-rich Low_complexity Low_complexity 5 72 0 289 209 74 47 chr15 44526431 44526600 -56853921 - L1MEd LINE L1 -4865 1254 1174 2646 153 19 53 chr15 44526682 44527210 -56853311 - L1MC1 LINE L1 -18 6315 5806 2378 191 62 11 chr15 44527234 44527785 -56852736 - L1MC1 LINE L1 -844 5302 4724 2354 73 33 3 chr15 44527804 44528105 -56852416 - AluSq SINE Alu -3 310 1 609 158 58 0 chr15 44528163 44528283 -56852238 - MLT1C LTR MaLR -340 127 1 801 219 123 0 chr15 44528296 44528547 -56851974 - L1MC1 LINE L1 -2447 3699 3418 2445 108 128 10 chr15 44528548 44528585 -56851936 - MLT2A1 LTR ERVL -8 436 405 189 0 0 0 chr15 44528585 44528606 -56851915 + (TA)n Simple_repeat Simple_repeat 1 21 0 2445 108 128 10 chr15 44528606 44528958 -56851563 - MLT2A1 LTR ERVL -39 405 1 1153 236 31 31 chr15 44528958 44529053 -56851468 - L1MC1 LINE L1 -2721 3425 3331 2078 119 3 38 chr15 44529053 44529373 -56851148 - AluSc SINE Alu 0 309 1 1153 236 31 31 chr15 44529373 44529700 -56850821 - L1MC1 LINE L1 -2814 3332 3003 1896 98 0 42 chr15 44530736 44531021 -56849500 + L1PB1 LINE L1 5879 6151 0 2024 157 14 40 chr15 44531059 44531410 -56849111 - MER2 DNA MER2_type -2 342 1 1911 107 70 0 chr15 44531605 44531906 -56848615 - AluSx SINE Alu 0 312 1 2365 62 10 3 chr15 44532319 44532610 -56847911 + AluY SINE Alu 1 293 -18 2292 90 3 26 chr15 44532774 44533086 -56847435 - AluSg SINE Alu -5 305 1 22 0 0 0 chr15 44533136 44533158 -56847363 + AT_rich Low_complexity Low_complexity 1 22 0 209 396 57 0 chr15 44533288 44533447 -56847074 + MIR3 SINE MIR 34 201 -7 451 319 71 0 chr15 44533658 44533840 -56846681 + MIR SINE MIR 67 261 -1 1548 142 26 122 chr15 44534229 44534574 -56845947 + AluJo SINE Alu 1 312 0 2247 86 0 0 chr15 44534595 44534898 -56845623 + AluSc SINE Alu 1 303 0 196 350 19 29 chr15 44534948 44535051 -56845470 - MIR SINE MIR -68 140 39 2321 98 3 0 chr15 44536730 44537027 -56843494 - AluSx SINE Alu -14 298 1 710 219 5 62 chr15 44537496 44537688 -56842833 - L1MC5 LINE L1 -39 7922 7742 372 22 0 0 chr15 44537971 44538016 -56842505 + (TG)n Simple_repeat Simple_repeat 1 45 0 2347 98 0 7 chr15 44538507 44538813 -56841708 + AluSq SINE Alu 1 304 -9 1216 156 39 34 chr15 44540935 44541140 -56839381 + AluJb SINE Alu 86 291 -21 978 151 0 13 chr15 44541829 44541988 -56838533 + AluSc SINE Alu 148 304 -5 2268 88 7 3 chr15 44542085 44542379 -56838142 - AluY SINE Alu -16 295 1 856 242 167 71 chr15 44542463 44543140 -56837381 - HAL1 LINE L1 -74 2433 1692 2327 107 0 0 chr15 44543160 44543470 -56837051 - AluSq SINE Alu -3 310 1 1349 229 122 54 chr15 44543476 44544017 -56836504 - L1ME2 LINE L1 0 6164 5587 1196 54 0 13 chr15 44544095 44544244 -56836277 - L1PA5 LINE L1 0 6154 6008 1245 54 0 0 chr15 44544244 44544393 -56836128 + L1P2 LINE L1 5634 5782 -373 267 313 0 0 chr15 44544470 44544534 -56835987 - MLT1J2 LTR MaLR -120 330 267 321 261 97 17 chr15 44544589 44544739 -56835782 - MLT1J2 LTR MaLR -264 145 1 816 263 89 58 chr15 44544739 44546156 -56834365 - HAL1 LINE L1 -854 1653 4 201 39 0 0 chr15 44546519 44546545 -56833976 + (TAA)n Simple_repeat Simple_repeat 2 27 0 125 14 0 0 chr15 44546545 44546684 -56833837 + AT_rich Low_complexity Low_complexity 1 139 0 303 293 38 9 chr15 44546783 44546889 -56833632 + L2 LINE L2 3164 3272 0 211 372 16 33 chr15 44546954 44547075 -56833446 + MIR SINE MIR 30 148 -114 884 231 0 6 chr15 44547106 44547266 -56833255 - FRAM SINE Alu -21 155 1 187 333 119 23 chr15 44547850 44548027 -56832494 + MIR SINE MIR 18 211 -51 2339 103 0 0 chr15 44548620 44548921 -56831600 - AluSg1 SINE Alu -8 301 1 2239 121 0 13 chr15 44549378 44549692 -56830829 + AluSq SINE Alu 1 310 -3 2324 96 26 3 chr15 44550804 44551107 -56829414 + AluSg SINE Alu 1 310 0 912 256 12 0 chr15 44551944 44552116 -56828405 - FAM SINE Alu -1 174 1 326 301 135 0 chr15 44553161 44553317 -56827204 + MIR SINE MIR 24 200 -62 225 0 0 0 chr15 44553513 44553538 -56826983 + (T)n Simple_repeat Simple_repeat 1 25 0 289 171 14 43 chr15 44554183 44554253 -56826268 - MER117 DNA MER1_type -84 113 46 2384 129 22 25 chr15 44556585 44556950 -56823571 + THE1B LTR MaLR 1 364 0 12699 89 1 18 chr15 44556950 44558557 -56821964 + THE1B-int LTR MaLR 1 1580 0 2270 111 60 29 chr15 44558560 44558910 -56821611 + THE1B LTR MaLR 4 364 0 216 214 0 43 chr15 44559068 44559138 -56821383 + CT-rich Low_complexity Low_complexity 2 68 0 300 311 163 25 chr15 44559474 44559670 -56820851 + HAL1 LINE L1 1561 1783 -724 2777 185 11 17 chr15 44559821 44560296 -56820225 + MER70A LTR ERVL 1 472 0 226 345 0 0 chr15 44560474 44560561 -56819960 + HAL1 LINE L1 2078 2164 -343 2387 113 25 17 chr15 44561031 44561393 -56819128 - THE1C LTR MaLR 0 375 11 180 0 0 0 chr15 44562640 44562660 -56817861 + (CTA)n Simple_repeat Simple_repeat 1 20 0 1347 259 116 25 chr15 44562724 44563283 -56817238 - MLT1L LTR MaLR -5 610 1 266 271 60 99 chr15 44563941 44564243 -56816278 - MLT1I LTR MaLR -22 387 98 653 230 87 6 chr15 44564269 44564430 -56816091 - MER21B LTR ERV1 -54 809 636 1690 232 18 15 chr15 44564510 44564850 -56815671 - MER21B LTR ERV1 -514 349 9 253 261 14 14 chr15 44564854 44564923 -56815598 - MLT1I LTR MaLR -300 109 41 234 333 86 19 chr15 44565040 44565202 -56815319 + L3 LINE CR1 994 1166 -411 2279 87 3 3 chr15 44566834 44567133 -56813388 + AluSg SINE Alu 1 299 -11 576 260 28 39 chr15 44567142 44567323 -56813198 + MIR SINE MIR 10 188 -74 244 289 221 7 chr15 44567374 44567523 -56812998 - MLT1K LTR MaLR -6 582 402 1685 201 66 81 chr15 44567525 44568007 -56812514 + MLT1F LTR MaLR 1 475 -67 1442 162 8 12 chr15 44568007 44568254 -56812267 + MER47A DNA MER2_type 1 246 -120 613 267 34 0 chr15 44568254 44568400 -56812121 - MIR SINE MIR -105 157 7 2110 131 0 0 chr15 44568472 44568763 -56811758 - AluSx SINE Alu -3 309 19 203 256 0 0 chr15 44570486 44570529 -56809992 + CT-rich Low_complexity Low_complexity 3 45 0 213 39 0 0 chr15 44571333 44571359 -56809162 + (T)n Simple_repeat Simple_repeat 1 26 0 491 235 83 30 chr15 44571795 44571927 -56808594 - L2 LINE L2 0 3272 3134 263 174 36 167 chr15 44572502 44572640 -56807881 - L1ME3A LINE L1 -88 6082 5963 307 243 0 14 chr15 44572647 44572717 -56807804 - L1MCa LINE L1 -4352 2074 2006 303 292 11 11 chr15 44572686 44572775 -56807746 - L1MC4 LINE L1 -1339 6983 6895 * 915 230 102 43 chr15 44572807 44573129 -56807392 - L1ME3A LINE L1 -215 5955 5615 532 308 90 30 chr15 44573131 44573393 -56807128 + LTR33 LTR ERVL 2 254 -269 581 263 161 27 chr15 44573876 44574100 -56806421 + MIR SINE MIR 9 262 0 216 0 0 0 chr15 44574165 44574189 -56806332 + (TA)n Simple_repeat Simple_repeat 2 25 0 377 282 19 0 chr15 44575613 44575716 -56804805 + MIR SINE MIR 49 153 -109 213 191 29 59 chr15 44576419 44576487 -56804034 + MIR SINE MIR 197 262 0 222 288 15 0 chr15 44577370 44577436 -56803085 - MIR SINE MIR -111 151 85 5410 15 2 0 chr15 44577848 44578474 -56802047 + L1PA3 LINE L1 5534 6160 0 184 262 226 12 chr15 44578557 44578641 -56801880 - MIR SINE MIR -70 138 37 1859 167 0 10 chr15 44579302 44579613 -56800908 - AluJo SINE Alu -4 308 1 243 236 89 96 chr15 44580149 44580306 -56800215 + MLT1J2 LTR MaLR 1 156 -294 248 231 45 104 chr15 44580406 44580540 -56799981 + MLT1J2 LTR MaLR 281 406 -44 451 345 29 0 chr15 44580565 44580736 -56799785 + MIR SINE MIR 46 221 -41 215 261 15 46 chr15 44580861 44580926 -56799595 + L2 LINE L2 3200 3262 -10 2266 67 3 7 chr15 44581738 44582023 -56798498 + AluY SINE Alu 11 294 -17 1807 152 38 7 chr15 44582050 44582339 -56798182 + AluJo SINE Alu 1 298 -14 322 214 245 0 chr15 44582709 44582807 -56797714 - MER96B DNA MER1_type? 0 417 296 232 121 0 0 chr15 44582833 44582866 -56797655 + MER58A DNA MER1_type 45 77 -30 385 235 189 15 chr15 44582866 44582998 -56797523 + MER5A DNA MER1_type 35 189 0 834 236 11 17 chr15 44584118 44584296 -56796225 - MER5B DNA MER1_type -1 177 1 26 0 0 0 chr15 44584326 44584352 -56796169 + AT_rich Low_complexity Low_complexity 1 26 0 253 254 17 0 chr15 44584371 44584430 -56796091 - MLT1J2 LTR MaLR -21 429 370 555 308 36 10 chr15 44584433 44584628 -56795893 - MLT1J2 LTR MaLR -250 200 1 2178 112 3 0 chr15 44584717 44585013 -56795508 + AluSp SINE Alu 1 297 -16 187 175 35 0 chr15 44585057 44585114 -56795407 + (TA)n Simple_repeat Simple_repeat 2 60 0 2538 65 0 0 chr15 44585151 44585458 -56795063 + AluY SINE Alu 1 307 -4 1456 159 59 4 chr15 44585480 44585719 -56794802 - AluJo SINE Alu -47 265 14 375 297 62 8 chr15 44586351 44586479 -56794042 - L2 LINE L2 0 3272 3138 182 300 22 44 chr15 44586700 44586790 -56793731 + MIR SINE MIR 24 111 -97 290 297 133 8 chr15 44586937 44587065 -56793456 - MIR SINE MIR -95 167 24 2102 148 0 0 chr15 44588267 44588570 -56791951 - AluSx SINE Alu -9 303 1 209 338 42 0 chr15 44589931 44590002 -56790519 - L3 LINE CR1 -18 1559 1486 395 319 96 46 chr15 44590092 44590352 -56790169 - L3 LINE CR1 -85 1492 1220 1047 145 22 6 chr15 44592561 44592740 -56787781 + MER5A DNA MER1_type 8 189 0 2447 74 0 0 chr15 44595557 44595853 -56784668 + AluY SINE Alu 1 296 -15 479 269 76 46 chr15 44597871 44598068 -56782453 - MIR SINE MIR -58 204 2 834 152 11 11 chr15 44598290 44598468 -56782053 + CT-rich Low_complexity Low_complexity 1 178 0 24 0 0 0 chr15 44598567 44598591 -56781930 + AT_rich Low_complexity Low_complexity 1 24 0 349 197 83 38 chr15 44598768 44598900 -56781621 + LTR33 LTR ERVL 1 138 -383 245 121 0 0 chr15 44598896 44598929 -56781592 + LTR33 LTR ERVL 487 519 -2 * 721 256 52 52 chr15 44598979 44599268 -56781253 + L3 LINE CR1 1287 1575 -2 400 371 36 6 chr15 44600854 44601021 -56779500 + MIR3 SINE MIR 35 206 -2 234 0 0 0 chr15 44601135 44601161 -56779360 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1649 133 115 11 chr15 44603619 44603898 -56776623 + AluSg1 SINE Alu 1 308 -1 210 91 0 0 chr15 44605309 44605342 -56775179 + (TCTCC)n Simple_repeat Simple_repeat 4 36 0 24 77 0 0 chr15 44608175 44608227 -56772294 + AT_rich Low_complexity Low_complexity 1 52 0 455 200 0 9 chr15 44609481 44609596 -56770925 + CT-rich Low_complexity Low_complexity 2 115 0 300 219 210 67 chr15 44610514 44610633 -56769888 - MER5B DNA MER1_type -42 136 1 1181 191 31 36 chr15 44610870 44611095 -56769426 - MER58A DNA MER1_type 0 224 1 373 302 38 9 chr15 44611108 44611214 -56769307 + MER5B DNA MER1_type 6 114 -64 2191 113 7 10 chr15 44612034 44612344 -56768177 - AluSx SINE Alu -3 309 1 278 236 16 50 chr15 44612427 44612609 -56767912 + (TATAA)n Simple_repeat Simple_repeat 1 176 0 2137 118 3 3 chr15 44612611 44612900 -56767621 - AluSx SINE Alu -23 289 1 184 292 0 0 chr15 44613294 44613342 -56767179 + L2 LINE L2 3210 3257 -15 337 236 0 0 chr15 44614124 44614196 -56766325 - MER94 DNA DNA -1 133 62 850 147 102 34 chr15 44614825 44615002 -56765519 - MER5A DNA MER1_type 0 189 1 200 247 0 12 chr15 44615166 44615247 -56765274 + GA-rich Low_complexity Low_complexity 4 83 0 1949 166 3 0 chr15 44615740 44616042 -56764479 - AluSx SINE Alu -9 303 1 801 166 0 0 chr15 44616612 44616757 -56763764 + (TG)n Simple_repeat Simple_repeat 2 146 0 497 264 23 0 chr15 44617649 44617778 -56762743 + L2 LINE L2 3180 3311 -2 244 286 149 3 chr15 44621656 44621761 -56758760 - MIR SINE MIR -68 140 60 535 271 0 0 chr15 44623562 44623691 -56756830 - MER94 DNA DNA -2 132 4 196 326 141 22 chr15 44624563 44624655 -56755866 + L3b LINE CR1 1457 1559 -24 1541 172 8 8 chr15 44624734 44625001 -56755520 + AluJo SINE Alu 37 303 -9 356 256 47 0 chr15 44626055 44626141 -56754380 - L1MC4 LINE L1 -1339 6703 6614 356 233 47 0 chr15 44626069 44626155 -56754366 + L1MC4 LINE L1 6614 6703 -1339 38 39 0 0 chr15 44626725 44626777 -56753744 + AT_rich Low_complexity Low_complexity 1 52 0 2011 131 14 46 chr15 44627133 44627483 -56753038 + MER44D DNA MER2_type 1 609 0 1133 118 22 1 chr15 44633732 44633920 -56746601 + L1MC1 LINE L1 5668 5825 -341 2128 123 7 7 chr15 44633922 44634300 -56746221 + AluSq SINE Alu 1 378 -503 2844 125 16 25 chr15 44634300 44634787 -56745734 + L1MC1 LINE L1 5851 6333 0 2128 123 7 7 chr15 44634787 44634803 -56745718 + AluSq SINE Alu 377 881 0 514 273 160 0 chr15 44635052 44635202 -56745319 - MER5A DNA MER1_type -7 182 9 199 0 31 31 chr15 44635390 44635422 -56745099 + (CAA)n Simple_repeat Simple_repeat 2 33 0 327 104 0 0 chr15 44637783 44637831 -56742690 + (TG)n Simple_repeat Simple_repeat 2 49 0 213 424 8 0 chr15 44638262 44638387 -56742134 + L2 LINE L2 3142 3267 -5 192 179 0 0 chr15 44638598 44638637 -56741884 + (TAG)n Simple_repeat Simple_repeat 2 40 0 494 301 15 40 chr15 44638647 44638849 -56741672 - MIR SINE MIR -23 239 44 21 0 0 0 chr15 44639622 44639643 -56740878 + AT_rich Low_complexity Low_complexity 1 21 0 709 207 28 0 chr15 44639912 44640057 -56740464 + MIR3 SINE MIR 37 185 -23 240 167 0 0 chr15 44641801 44641849 -56738672 + CT-rich Low_complexity Low_complexity 1 48 0 240 196 36 36 chr15 44641880 44641936 -56738585 + L3 LINE CR1 1520 1575 -2 275 198 148 12 chr15 44642314 44642395 -56738126 + Charlie7 DNA MER1_type 5 96 -2516 212 118 0 39 chr15 44642490 44642541 -56737980 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 1248 225 79 0 chr15 44642625 44642941 -56737580 - MER58B DNA MER1_type 0 341 1 255 195 134 12 chr15 44644297 44644379 -56736142 + Charlie7 DNA MER1_type 5 96 -2516 212 118 0 39 chr15 44644474 44644525 -56735996 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 1222 228 79 0 chr15 44644609 44644925 -56735596 - MER58B DNA MER1_type 0 341 1 2053 140 0 19 chr15 44647162 44647476 -56733045 + AluSx SINE Alu 1 308 -4 189 328 16 0 chr15 44649253 44649314 -56731207 - MIR SINE MIR -154 108 47 213 381 143 7 chr15 44649369 44649516 -56731005 + L2 LINE L2 3106 3272 0 2542 54 0 0 chr15 44650997 44651291 -56729230 + AluY SINE Alu 1 294 -17 318 54 81 0 chr15 44651291 44651365 -56729156 + (TA)n Simple_repeat Simple_repeat 1 80 0 222 91 0 0 chr15 44654662 44654695 -56725826 + (ATG)n Simple_repeat Simple_repeat 1 33 0 24 0 0 0 chr15 44654823 44654847 -56725674 + AT_rich Low_complexity Low_complexity 1 24 0 264 100 0 0 chr15 44655041 44655081 -56725440 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 24 32 0 0 chr15 44656112 44656143 -56724378 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr15 44656719 44656740 -56723781 + AT_rich Low_complexity Low_complexity 1 21 0 934 121 8 0 chr15 44656740 44656872 -56723649 - AluSp SINE Alu -180 133 1 192 77 0 0 chr15 44658964 44658990 -56721531 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 4006 240 26 14 chr15 44662271 44663387 -56717134 + L1MEc LINE L1 29 1157 -5239 22 35 0 0 chr15 44664069 44664098 -56716423 + AT_rich Low_complexity Low_complexity 1 29 0 24 91 0 0 chr15 44664134 44664200 -56716321 + AT_rich Low_complexity Low_complexity 1 66 0 2328 95 7 0 chr15 44664324 44664619 -56715902 - AluSx SINE Alu -15 297 1 895 238 11 11 chr15 44664832 44665021 -56715500 - MER5A DNA MER1_type 0 189 1 337 286 224 16 chr15 44665085 44665277 -56715244 - MIR SINE MIR -23 239 8 1121 195 167 29 chr15 44665474 44665822 -56714699 + MSTD LTR MaLR 1 396 0 311 296 128 24 chr15 44665917 44666042 -56714479 - L2 LINE L2 -4 3309 3172 253 80 20 20 chr15 44666934 44666953 -56713568 + (TTAAA)n Simple_repeat Simple_repeat 5 23 -31 180 0 0 0 chr15 44666953 44666973 -56713548 + (CATAC)n Simple_repeat Simple_repeat 5 24 0 253 80 20 20 chr15 44666973 44667003 -56713518 + (TTAAA)n Simple_repeat Simple_repeat 22 54 0 851 247 37 29 chr15 44667475 44667718 -56712803 + LTR16A1 LTR ERVL 213 457 0 2188 119 0 10 chr15 44668014 44668324 -56712197 - AluSx SINE Alu -5 307 1 308 222 22 44 chr15 44668407 44668587 -56711934 + (TATAA)n Simple_repeat Simple_repeat 1 176 0 1768 149 7 50 chr15 44668589 44668891 -56711630 - AluSx SINE Alu -23 289 1 287 292 143 39 chr15 44670265 44670419 -56710102 + MIR3 SINE MIR 15 184 -24 209 200 0 0 chr15 44670876 44670911 -56709610 + T-rich Low_complexity Low_complexity 2 36 0 2250 93 0 7 chr15 44671136 44671437 -56709084 - AluY SINE Alu -12 299 1 30 0 0 0 chr15 44676322 44676352 -56704169 + AT_rich Low_complexity Low_complexity 1 30 0 567 257 49 56 chr15 44680939 44681243 -56699278 + MSTD LTR MaLR 8 309 -87 1194 226 16 28 chr15 44681578 44681901 -56698620 + MSTD LTR MaLR 78 396 0 185 333 83 12 chr15 44682029 44682113 -56698408 + MIR SINE MIR 39 128 -134 1958 145 27 3 chr15 44682380 44682549 -56697972 - AluSx SINE Alu -9 303 123 204 40 0 0 chr15 44682549 44682574 -56697947 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1958 145 27 3 chr15 44682574 44682700 -56697821 - AluSx SINE Alu -189 123 1 213 263 118 0 chr15 44683026 44683102 -56697419 - MIR3 SINE MIR -5 203 119 21 36 0 0 chr15 44683122 44683150 -56697371 + AT_rich Low_complexity Low_complexity 1 28 0 2483 72 3 0 chr15 44683374 44683681 -56696840 + AluSg SINE Alu 3 310 0 217 300 220 0 chr15 44685159 44685259 -56695262 + L2 LINE L2 3149 3270 -2 2081 148 0 13 chr15 44686914 44687224 -56693297 + AluSx SINE Alu 1 306 -6 279 158 73 0 chr15 44690784 44690949 -56689572 + (TA)n Simple_repeat Simple_repeat 1 177 0 261 56 0 0 chr15 44693642 44693678 -56686843 - L1P4 LINE L1 -381 5782 5747 437 226 188 8 chr15 44693940 44694073 -56686448 - MER5A DNA MER1_type 0 189 33 184 340 64 51 chr15 44695167 44695323 -56685198 - MIR3 SINE MIR -39 169 12 1933 186 54 50 chr15 44695777 44696273 -56684248 + MLT1D LTR MaLR 6 503 -2 21 0 0 0 chr15 44697055 44697076 -56683445 + AT_rich Low_complexity Low_complexity 1 21 0 1172 284 99 65 chr15 44697528 44698284 -56682237 - L2 LINE L2 -508 2806 2025 243 314 41 50 chr15 44699119 44699240 -56681281 + L2 LINE L2 3143 3262 -10 384 113 0 0 chr15 44700092 44700154 -56680367 - L1MA8 LINE L1 -6 6285 6224 311 177 0 0 chr15 44700811 44700873 -56679648 - L1MA8 LINE L1 -4 6287 6226 2626 97 10 162 chr15 44703037 44703664 -56676857 + MER1A DNA MER1_type 1 533 0 24 32 0 0 chr15 44703849 44703880 -56676641 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr15 44704673 44704705 -56675816 + AT_rich Low_complexity Low_complexity 1 32 0 2135 110 0 13 chr15 44706271 44706570 -56673951 - AluSx SINE Alu -17 295 1 368 317 113 0 chr15 44706820 44706962 -56673559 - L2 LINE L2 -556 2758 2601 1022 283 46 13 chr15 44707985 44708377 -56672144 + LTR16A LTR ERVL 1 405 -45 209 339 15 0 chr15 44709555 44709620 -56670901 - MIR SINE MIR -22 240 175 380 241 42 78 chr15 44711549 44711715 -56668806 - MIR3 SINE MIR -16 192 33 231 235 0 0 chr15 44713591 44713642 -56666879 + (TA)n Simple_repeat Simple_repeat 1 51 0 384 152 0 0 chr15 44713642 44713708 -56666813 + (TG)n Simple_repeat Simple_repeat 1 66 0 235 316 146 29 chr15 44713765 44713936 -56666585 + MIR3 SINE MIR 10 200 -8 881 280 75 33 chr15 44716133 44716558 -56663963 + L2 LINE L2 2816 3258 -55 198 0 0 0 chr15 44717298 44717320 -56663201 + (CAA)n Simple_repeat Simple_repeat 1 22 0 250 290 48 76 chr15 44719119 44719264 -56661257 + MIR SINE MIR 81 221 -41 282 319 50 0 chr15 44719302 44719421 -56661100 - L2 LINE L2 0 3313 3189 286 329 19 19 chr15 44720118 44720276 -56660245 - MARNA DNA Mariner -236 350 193 409 199 50 50 chr15 44721500 44721641 -56658880 + AluYa8 SINE Alu 2 142 -168 320 351 7 14 chr15 44722522 44722670 -56657851 + MIR SINE MIR 46 192 -70 222 261 15 46 chr15 44722821 44722886 -56657635 + L2 LINE L2 3200 3262 -10 2118 87 14 10 chr15 44723700 44723988 -56656533 + AluY SINE Alu 11 299 -12 243 290 0 0 chr15 44724097 44724159 -56656362 + (TA)n Simple_repeat Simple_repeat 2 63 0 26 30 0 0 chr15 44724221 44724254 -56656267 + AT_rich Low_complexity Low_complexity 1 33 0 231 36 0 0 chr15 44724261 44724289 -56656232 + (TG)n Simple_repeat Simple_repeat 2 29 0 278 206 59 0 chr15 44726436 44726504 -56654017 - MER113 DNA MER1_type? -428 93 22 477 290 35 35 chr15 44727167 44727426 -56653095 - L1ME4a LINE L1 -168 5953 5695 23 0 0 0 chr15 44727522 44727545 -56652976 + AT_rich Low_complexity Low_complexity 1 23 0 412 219 6 134 chr15 44729418 44729582 -56650939 - MER5B DNA MER1_type 0 178 36 279 0 0 0 chr15 44729610 44729641 -56650880 + (TG)n Simple_repeat Simple_repeat 2 32 0 467 273 52 16 chr15 44730288 44730482 -56650039 + L1MC5 LINE L1 7271 7471 -490 299 252 161 7 chr15 44730592 44730732 -56649789 + L1MC4 LINE L1 7624 7896 -146 213 214 43 0 chr15 44730732 44730802 -56649719 + (TA)n Simple_repeat Simple_repeat 2 74 0 249 292 77 0 chr15 44730802 44730932 -56649589 + L1MC4 LINE L1 7902 8041 -1 1317 124 103 4 chr15 44732306 44732548 -56647973 + L1MB3 LINE L1 5918 6183 0 1490 164 65 11 chr15 44732558 44732847 -56647674 + AluJo SINE Alu 6 308 0 767 326 136 23 chr15 44732944 44733767 -56646754 - L2 LINE L2 -1 3312 2377 486 0 0 0 chr15 44734533 44734587 -56645934 + (CA)n Simple_repeat Simple_repeat 1 54 0 269 282 55 27 chr15 44736862 44736972 -56643549 + MIR3 SINE MIR 4 116 -92 262 283 75 19 chr15 44737669 44737775 -56642746 + L2 LINE L2 3178 3289 -24 279 0 0 0 chr15 44737781 44737812 -56642709 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 185 262 115 0 chr15 44737996 44738057 -56642464 + MIR SINE MIR 159 226 -36 4926 94 28 0 chr15 44738331 44739047 -56641474 - L1PA13 LINE L1 0 6163 5428 2042 135 3 0 chr15 44739085 44739381 -56641140 - AluJo SINE Alu -6 306 10 386 264 45 39 chr15 44739382 44739537 -56640984 + MLT1J LTR MaLR 356 511 0 653 277 40 17 chr15 44740758 44740935 -56639586 - MIR SINE MIR -70 192 12 347 342 18 0 chr15 44740965 44741079 -56639442 - MIR SINE MIR -70 138 23 343 210 37 12 chr15 44741606 44741687 -56638834 + MIR SINE MIR 73 155 -107 188 368 36 104 chr15 44742238 44742545 -56637976 + L2 LINE L2 2978 3263 -9 294 356 139 25 chr15 44743476 44743678 -56636843 + MIR SINE MIR 8 232 -30 455 319 98 12 chr15 44744033 44744196 -56636325 - MIR3 SINE MIR -30 178 2 509 213 110 7 chr15 44747118 44747254 -56633267 + MIR SINE MIR 63 212 -50 409 283 0 18 chr15 44747690 44747803 -56632718 + MIR SINE MIR 81 191 -71 263 263 0 0 chr15 44747856 44747913 -56632608 - MIR SINE MIR -69 139 83 21 0 0 0 chr15 44748184 44748205 -56632316 + AT_rich Low_complexity Low_complexity 1 21 0 391 327 83 6 chr15 44748738 44748906 -56631615 - MER5A DNA MER1_type -8 181 1 288 312 52 39 chr15 44748906 44749053 -56631468 + MIR3 SINE MIR 32 180 -28 223 222 0 123 chr15 44749806 44749887 -56630634 + L2 LINE L2 3242 3312 -1 372 260 64 20 chr15 44749966 44750083 -56630438 - L2 LINE L2 -16 3297 3134 25 51 0 0 chr15 44750356 44750395 -56630126 + AT_rich Low_complexity Low_complexity 1 39 0 33 0 0 0 chr15 44751376 44751409 -56629112 + AT_rich Low_complexity Low_complexity 1 33 0 217 336 29 0 chr15 44751773 44751877 -56628644 - MIR SINE MIR -26 236 130 216 318 15 0 chr15 44751990 44752056 -56628465 + L2 LINE L2 3246 3312 -1 465 209 29 29 chr15 44752125 44752264 -56628257 - L1ME4a LINE L1 -4 6117 5979 454 242 0 0 chr15 44753492 44753587 -56626934 - MIR3 SINE MIR -6 202 108 483 247 139 36 chr15 44753743 44753909 -56626612 + MER5A DNA MER1_type 4 186 -3 647 220 187 26 chr15 44753936 44754209 -56626312 + MER5C DNA MER1_type 8 324 0 6811 209 57 9 chr15 44754267 44754817 -56625704 + L1MB7 LINE L1 3620 4142 -2042 959 0 9 0 chr15 44754817 44754928 -56625593 + (GAAA)n Simple_repeat Simple_repeat 3 114 0 6811 209 57 9 chr15 44754928 44756831 -56623690 + L1MB7 LINE L1 4142 6184 0 296 309 95 18 chr15 44757356 44757524 -56622997 - L3 LINE CR1 -10 1567 1387 21 36 0 0 chr15 44760319 44760347 -56620174 + AT_rich Low_complexity Low_complexity 1 28 0 311 327 105 26 chr15 44760928 44761081 -56619440 - L2 LINE L2 -1 3271 3107 348 64 0 0 chr15 44762149 44762196 -56618325 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1341 181 12 0 chr15 44762196 44762439 -56618082 - L1PB4 LINE L1 -19 6137 5892 1662 117 140 0 chr15 44762440 44762632 -56617889 + L1PB4 LINE L1 5560 5724 -432 396 0 0 0 chr15 44762632 44762676 -56617845 + (CA)n Simple_repeat Simple_repeat 2 45 0 1662 117 140 0 chr15 44762676 44762783 -56617738 + L1PB4 LINE L1 5724 5901 -255 251 196 0 18 chr15 44763382 44763438 -56617083 + GA-rich Low_complexity Low_complexity 2 56 0 198 118 0 0 chr15 44763469 44763503 -56617018 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 392 271 44 83 chr15 44763505 44763734 -56616787 - L2 LINE L2 -16 3297 3078 813 72 0 0 chr15 44765510 44765625 -56614896 - L1M4 LINE L1 -496 5659 5563 3546 24 0 0 chr15 44765625 44766039 -56614482 + L1PA2 LINE L1 5742 6155 0 417 248 124 0 chr15 44768136 44768257 -56612264 - L2 LINE L2 0 3313 3178 290 253 168 0 chr15 44769237 44769332 -56611189 - L2 LINE L2 0 3272 3162 323 258 52 21 chr15 44770114 44770211 -56610310 + L2 LINE L2 3137 3236 -36 735 289 11 0 chr15 44771139 44771329 -56609192 - MIR SINE MIR -3 259 68 24 32 0 0 chr15 44772864 44772895 -56607626 + AT_rich Low_complexity Low_complexity 1 31 0 230 211 18 0 chr15 44773971 44774028 -56606493 + MER103 DNA DNA 24 81 -85 1327 154 110 3 chr15 44775120 44775412 -56605109 + MER33 DNA MER1_type 2 324 0 2403 70 3 13 chr15 44776625 44776937 -56603584 - AluY SINE Alu -2 309 1 507 312 47 29 chr15 44778163 44778503 -56602018 + MARNA DNA Mariner 193 538 -48 638 314 53 4 chr15 44778868 44779113 -56601408 + MIR SINE MIR 3 259 -3 186 367 18 46 chr15 44780692 44780801 -56599720 - L2 LINE L2 -35 3237 3132 290 361 19 0 chr15 44782680 44782788 -56597733 + MIR SINE MIR 82 191 -71 1041 298 57 21 chr15 44784280 44784700 -56595821 + LTR16B LTR ERVL 30 464 0 271 330 11 11 chr15 44784805 44784899 -56595622 - MIR3 SINE MIR -7 201 108 797 286 16 33 chr15 44785184 44785429 -56595092 + MIR SINE MIR 19 259 -3 307 309 49 57 chr15 44785535 44785781 -56594740 + L2 LINE L2 2827 3070 -202 2070 111 81 23 chr15 44785827 44786171 -56594350 + THE1B LTR MaLR 1 364 0 341 257 87 22 chr15 44786250 44786433 -56594088 + L1ME4a LINE L1 5725 5919 -202 265 318 110 13 chr15 44786709 44786863 -56593658 - L2 LINE L2 -876 2438 2270 2029 109 34 10 chr15 44787444 44787737 -56592784 + AluSx SINE Alu 1 300 -12 281 146 21 0 chr15 44789022 44789070 -56591451 - L2 LINE L2 0 3272 3224 194 254 36 0 chr15 44791017 44791072 -56589449 - L2 LINE L2 -1 3271 3215 195 42 0 0 chr15 44791566 44791590 -56588931 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 448 86 57 0 chr15 44791962 44792032 -56588489 + LTR2 LTR ERV1 373 446 -3 339 241 128 0 chr15 44792108 44792241 -56588280 + L1MD1 LINE L1 4563 4712 -1434 239 170 0 0 chr15 44792259 44792306 -56588215 + Alu SINE Alu 256 302 0 4687 174 16 43 chr15 44792306 44792616 -56587905 + L1MD1 LINE L1 5022 5339 -903 1881 162 0 7 chr15 44792616 44792906 -56587615 + AluSx SINE Alu 1 288 -24 4687 174 16 43 chr15 44792906 44793799 -56586722 + L1MD1 LINE L1 5339 6192 -50 1580 192 117 17 chr15 44793799 44794159 -56586362 + MSTD LTR MaLR 1 396 0 4687 174 16 43 chr15 44794159 44794204 -56586317 + L1MD1 LINE L1 6192 6237 -5 312 167 0 0 chr15 44794341 44794413 -56586108 + (TA)n Simple_repeat Simple_repeat 2 73 0 1781 155 31 31 chr15 44794413 44794768 -56585753 + MLT1A1 LTR MaLR 4 358 -7 1549 239 21 26 chr15 44796392 44796781 -56583740 - LTR16C LTR ERVL -7 484 98 235 240 173 13 chr15 44797425 44797500 -56583021 - L2 LINE L2 -5 3267 3181 22 0 0 0 chr15 44797718 44797740 -56582781 + AT_rich Low_complexity Low_complexity 1 22 0 235 278 157 26 chr15 44797925 44798040 -56582481 + MIR3 SINE MIR 38 167 -41 2395 98 0 0 chr15 44798282 44798588 -56581933 - AluY SINE Alu -5 306 1 219 234 43 0 chr15 44799289 44799336 -56581185 + MIR3 SINE MIR 139 187 -21 2225 109 0 0 chr15 44800674 44800968 -56579553 + AluSx SINE Alu 1 294 -18 250 222 0 71 chr15 44802572 44802671 -56577850 + HAL1b LINE L1 749 840 -508 21 0 0 0 chr15 44803814 44803835 -56576686 + AT_rich Low_complexity Low_complexity 1 21 0 603 309 14 24 chr15 44803856 44804066 -56576455 - MIR SINE MIR -48 214 7 2357 98 0 0 chr15 44804195 44804501 -56576020 - AluSg SINE Alu -4 306 1 3700 114 2 21 chr15 44805653 44806188 -56574333 + MER1A DNA MER1_type 3 527 0 195 129 0 0 chr15 44806474 44806505 -56574016 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 631 90 10 0 chr15 44806817 44806917 -56573604 + L1PA15 LINE L1 6065 6165 0 346 294 152 66 chr15 44807366 44807563 -56572958 - MIR SINE MIR -1 261 48 286 239 70 0 chr15 44807750 44807821 -56572700 - L2 LINE L2 -9 3304 3229 4912 173 45 15 chr15 44807822 44808735 -56571786 + L1MC3 LINE L1 6701 7650 -135 2503 58 0 32 chr15 44808735 44809048 -56571473 + AluY SINE Alu 1 303 -8 4912 173 45 15 chr15 44809048 44809184 -56571337 + L1MC3 LINE L1 7650 7781 -4 240 289 61 96 chr15 44809244 44809441 -56571080 - L2 LINE L2 -75 3197 3008 453 76 0 0 chr15 44810972 44811038 -56569483 + (CA)n Simple_repeat Simple_repeat 1 66 0 1298 154 9 14 chr15 44813094 44813315 -56567206 + AluJo SINE Alu 85 304 -8 329 266 57 8 chr15 44813926 44814050 -56566471 - MIR SINE MIR -51 211 82 923 204 66 69 chr15 44815760 44816079 -56564442 + L1MC5 LINE L1 7120 7437 -524 290 197 0 61 chr15 44816092 44816158 -56564363 + MER5C DNA MER1_type 15 76 -248 223 209 23 0 chr15 44816282 44816325 -56564196 - MER5C DNA MER1_type -248 76 33 1209 212 48 28 chr15 44816360 44816757 -56563764 + L1MC5 LINE L1 7452 7856 -105 732 112 0 0 chr15 44817699 44817797 -56562724 + AluY SINE Alu 213 310 -1 578 296 37 5 chr15 44819437 44819626 -56560895 - MIR SINE MIR -34 228 34 186 208 0 57 chr15 44820949 44821002 -56559519 + MIR SINE MIR 89 138 -70 360 259 17 17 chr15 44821776 44821892 -56558629 + GA-rich Low_complexity Low_complexity 2 117 0 414 0 0 0 chr15 44821893 44821939 -56558582 + (CA)n Simple_repeat Simple_repeat 1 46 0 369 246 175 47 chr15 44823119 44823330 -56557191 + MLT1G LTR MaLR 37 274 -281 218 308 67 0 chr15 44823471 44823575 -56556946 + MIR SINE MIR 31 141 -67 667 167 42 28 chr15 44823818 44823962 -56556559 + MLT1G LTR MaLR 445 590 0 183 351 117 32 chr15 44824088 44824370 -56556151 + L2 LINE L2 2454 2759 -555 251 323 50 10 chr15 44824468 44824567 -56555954 + MER91C DNA MER1_type 25 127 -13 253 236 136 73 chr15 44824727 44824837 -56555684 - L2 LINE L2 -10 3303 3187 1053 203 82 0 chr15 44824860 44825067 -56555454 - MER58A DNA MER1_type 0 224 1 1133 148 0 0 chr15 44825073 44825235 -56555286 - FRAM SINE Alu -14 162 1 429 281 115 26 chr15 44825439 44825631 -56554890 + MIR SINE MIR 2 210 -52 512 303 14 7 chr15 44826256 44826401 -56554120 + MIR SINE MIR 102 247 -15 300 267 164 42 chr15 44828967 44829144 -56551377 + L1MC4a LINE L1 5613 5834 -1974 1906 122 39 3 chr15 44829144 44829430 -56551091 + AluSx SINE Alu 5 300 -12 300 267 164 42 chr15 44829430 44829514 -56551007 + L1MC4a LINE L1 5834 5906 -1902 243 290 0 0 chr15 44829539 44829601 -56550920 + (TA)n Simple_repeat Simple_repeat 2 63 0 26 30 0 0 chr15 44829663 44829696 -56550825 + AT_rich Low_complexity Low_complexity 1 33 0 231 36 0 0 chr15 44829704 44829732 -56550789 + (TG)n Simple_repeat Simple_repeat 2 29 0 195 250 225 0 chr15 44833950 44834030 -56546491 + MIR SINE MIR 87 184 -78 259 320 22 108 chr15 44834341 44834563 -56545958 - L2 LINE L2 -73 3199 2997 415 251 12 135 chr15 44834577 44834644 -56545877 - MER5B DNA MER1_type -1 177 140 1918 152 0 26 chr15 44834644 44834954 -56545567 + AluSx SINE Alu 5 306 -6 415 251 12 135 chr15 44834954 44835049 -56545472 - MER5B DNA MER1_type -38 140 35 225 292 0 42 chr15 44836037 44836109 -56544412 - L2 LINE L2 0 3313 3245 547 100 12 12 chr15 44836142 44836222 -56544299 - MADE1 DNA Mariner 0 80 1 1787 84 0 4 chr15 44836381 44836607 -56543914 - AluY SINE Alu -6 305 81 695 263 86 27 chr15 44837517 44837952 -56542569 + MLT1H LTR MaLR 3 546 -3 222 294 55 40 chr15 44837955 44838086 -56542435 - MIR SINE MIR -63 145 39 286 269 28 28 chr15 44838357 44838465 -56542056 + L2 LINE L2 3201 3308 -5 27 81 0 0 chr15 44839225 44839287 -56541234 + AT_rich Low_complexity Low_complexity 1 62 0 225 231 333 34 chr15 44839909 44840026 -56540495 - MER58 DNA MER1_type 0 2420 2269 * 862 211 27 11 chr15 44840017 44840202 -56540319 - MER58 DNA MER1_type -2232 188 1 204 40 0 0 chr15 44840291 44840316 -56540205 + (GGGTG)n Simple_repeat Simple_repeat 5 29 0 285 239 108 31 chr15 44840319 44840449 -56540072 - L2 LINE L2 -217 3055 2916 451 293 33 56 chr15 44841017 44841187 -56539334 + L2 LINE L2 2175 2341 -973 1615 241 90 44 chr15 44841187 44841752 -56538769 + MLT1E LTR MaLR 1 591 -2 451 293 33 56 chr15 44841752 44841796 -56538725 + L2 LINE L2 2341 2384 -930 450 306 30 8 chr15 44842183 44842317 -56538204 + MIR3 SINE MIR 20 156 -52 379 252 52 43 chr15 44842348 44842463 -56538058 - MER5A DNA MER1_type -26 163 48 229 331 66 37 chr15 44842357 44842493 -56538028 + MER5A DNA MER1_type 46 185 -4 * 341 294 33 6 chr15 44845177 44845343 -56535178 + LTR16A1 LTR ERVL 9 176 -274 2541 271 73 21 chr15 44845398 44846476 -56534045 + L1M4 LINE L1 3253 4386 -1760 2260 253 38 78 chr15 44846505 44847331 -56533190 + L1ME LINE L1 32 744 -5336 1820 109 35 0 chr15 44847331 44847588 -56532933 + L1PA16 LINE L1 5900 6165 -1 2260 253 38 78 chr15 44847588 44848297 -56532224 + L1ME LINE L1 744 1480 -4600 1061 216 36 4 chr15 44848321 44848599 -56531922 + L1ME LINE L1 4340 4626 -1454 457 162 0 0 chr15 44848593 44848667 -56531854 - L1M4 LINE L1 -3557 2589 2516 * 1436 166 40 12 chr15 44849107 44849360 -56531161 + AluJo SINE Alu 40 299 -13 666 179 135 13 chr15 44849373 44849570 -56530951 + L1ME LINE L1 5171 5391 -713 254 337 4 20 chr15 44850498 44850620 -56529901 + MIR SINE MIR 59 181 -27 1787 210 72 47 chr15 44851599 44852150 -56528371 - MLT1F1 LTR MaLR 0 567 1 185 264 42 28 chr15 44852853 44852925 -56527596 - MIR3 SINE MIR -3 205 133 324 102 0 0 chr15 44853074 44853123 -56527398 + (CA)n Simple_repeat Simple_repeat 2 50 0 2222 100 0 26 chr15 44853179 44853490 -56527031 + AluSc SINE Alu 1 303 -6 428 256 51 98 chr15 44853640 44853855 -56526666 - L2 LINE L2 -656 2658 2454 305 307 29 0 chr15 44853876 44854016 -56526505 + L1MC5 LINE L1 7758 7901 -60 625 258 201 11 chr15 44854071 44854424 -56526097 + L1ME4a LINE L1 5628 6047 -74 2062 133 3 3 chr15 44855706 44856014 -56524507 - AluSx SINE Alu -4 308 1 320 0 0 24 chr15 44856866 44856926 -56523595 + (TA)n Simple_repeat Simple_repeat 1 98 0 320 0 0 24 chr15 44856926 44856967 -56523554 + (TA)n Simple_repeat Simple_repeat 2 41 0 482 239 34 0 chr15 44858112 44858229 -56522292 + L2 LINE L2 3192 3312 -1 186 350 0 0 chr15 44859015 44859075 -56521446 - L3 LINE CR1 -2 1575 1516 379 239 102 62 chr15 44859313 44859489 -56521032 + MIR3 SINE MIR 19 201 -7 262 288 88 0 chr15 44859483 44859563 -56520958 - MIR SINE MIR -106 102 16 * 558 333 104 40 chr15 44860065 44860536 -56519985 + L2 LINE L2 2813 3313 0 239 263 105 11 chr15 44860532 44860627 -56519894 - MIR3 SINE MIR -102 106 3 * 454 253 82 7 chr15 44861241 44861387 -56519134 + MIR SINE MIR 97 253 -9 436 210 25 0 chr15 44861702 44861783 -56518738 + MER5A DNA MER1_type 30 112 -77 268 242 8 83 chr15 44861834 44861954 -56518567 + MIR SINE MIR 108 218 -44 273 57 0 0 chr15 44863216 44863251 -56517270 + (TG)n Simple_repeat Simple_repeat 2 36 0 424 178 74 52 chr15 44863662 44863797 -56516724 - L1MC4 LINE L1 -1 8041 7904 428 0 19 0 chr15 44863802 44863854 -56516667 + (CA)n Simple_repeat Simple_repeat 1 53 0 414 328 8 8 chr15 44864887 44865012 -56515509 - MIR SINE MIR -112 150 26 22 56 0 0 chr15 44866580 44866616 -56513905 + AT_rich Low_complexity Low_complexity 1 36 0 27 62 0 0 chr15 44866709 44866757 -56513764 + AT_rich Low_complexity Low_complexity 1 48 0 1444 162 50 20 chr15 44867106 44867409 -56513112 - Tigger3b DNA MER2_type 0 1232 921 3787 132 73 38 chr15 44867409 44868198 -56512323 - Tigger3b DNA MER2_type -413 818 2 1318 217 46 15 chr15 44869058 44869636 -56510885 - L1MCa LINE L1 -4066 2360 1710 * 21982 144 24 21 chr15 44869634 44871912 -56508609 + L1MA3 LINE L1 11 2282 -5442 2463 92 0 0 chr15 44871912 44872218 -56508303 - AluSq SINE Alu -7 306 1 21982 144 24 21 chr15 44872218 44874545 -56505976 + L1MA3 LINE L1 2282 4602 -3122 2003 145 3 0 chr15 44874545 44874835 -56505686 + AluSx SINE Alu 1 291 -21 21982 144 24 21 chr15 44874835 44875067 -56505454 + L1MA3 LINE L1 4602 4832 -2892 1401 96 20 5 chr15 44875067 44875265 -56505256 + L1PA10 LINE L1 5963 6164 -4 21982 144 24 21 chr15 44875265 44878120 -56502401 + L1MA3 LINE L1 4832 7723 -1 716 187 122 54 chr15 44878134 44878469 -56502052 - L1MCa LINE L1 -4798 1628 1196 185 0 40 0 chr15 44878472 44878497 -56502024 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 345 165 51 0 chr15 44878540 44878619 -56501902 - L1MCa LINE L1 -5239 1187 1105 1744 112 9 0 chr15 44879390 44879622 -56500899 + AluSx SINE Alu 61 294 -18 1204 250 14 17 chr15 44879929 44880221 -56500300 + AluJb SINE Alu 1 291 -11 3011 261 130 35 chr15 44880260 44881519 -56499002 + L2 LINE L2 1632 3066 -247 1866 146 167 14 chr15 44881519 44881890 -56498631 + MSTA LTR MaLR 1 428 0 3011 261 130 35 chr15 44881890 44882163 -56498358 + L2 LINE L2 3066 3312 -1 418 298 70 35 chr15 44882435 44882606 -56497915 + MIR SINE MIR 10 186 -76 2211 267 88 35 chr15 44882774 44883776 -56496745 + L2 LINE L2 1966 3031 -282 1388 175 172 21 chr15 44883776 44884148 -56496373 + MSTA LTR MaLR 1 428 0 425 292 77 30 chr15 44884488 44884656 -56495865 + MIR SINE MIR 10 185 -77 207 345 58 0 chr15 44885343 44885430 -56495091 - L2 LINE L2 -57 3215 3124 243 243 97 0 chr15 44885594 44885697 -56494824 + MER112 DNA MER1_type 147 259 -1 250 128 0 0 chr15 44885913 44885952 -56494569 + MLT1J LTR MaLR 97 135 -376 2291 125 11 13 chr15 44886171 44886547 -56493974 + THE1C LTR MaLR 1 375 0 694 312 60 40 chr15 44886679 44887080 -56493441 - LTR16A1 LTR ERVL 0 457 49 495 325 30 43 chr15 44888140 44888224 -56492297 + L1 LINE L1 3722 3806 -2340 2400 94 0 0 chr15 44888224 44888523 -56491998 - AluSg SINE Alu -11 299 1 495 325 30 43 chr15 44888523 44888669 -56491852 + L1 LINE L1 3806 3949 -2197 2247 102 3 0 chr15 44888717 44889012 -56491509 + AluSp SINE Alu 2 297 -16 201 74 0 0 chr15 44889087 44889114 -56491407 + (A)n Simple_repeat Simple_repeat 1 27 0 1693 172 35 7 chr15 44889116 44889401 -56491120 + AluJb SINE Alu 1 293 -19 395 287 63 92 chr15 44889589 44889865 -56490656 + L1 LINE L1 4051 4333 -1813 2088 141 0 0 chr15 44889865 44890170 -56490351 - AluSx SINE Alu -7 305 1 395 287 63 92 chr15 44890170 44890400 -56490121 + L1 LINE L1 4333 4568 -1578 2211 126 0 3 chr15 44891171 44891480 -56489041 + AluSg SINE Alu 1 308 -2 200 200 25 0 chr15 44891781 44891821 -56488700 + MIR SINE MIR 192 232 -30 191 216 0 0 chr15 44893004 44893041 -56487480 - MIR SINE MIR -10 252 216 302 304 93 44 chr15 44893199 44893403 -56487118 + HAL1 LINE L1 982 1195 -1312 527 337 102 44 chr15 44893431 44893513 -56487008 + L1MEd LINE L1 4 80 -6039 201 39 0 0 chr15 44893513 44893539 -56486982 + (TA)n Simple_repeat Simple_repeat 2 27 0 527 337 102 44 chr15 44893539 44893800 -56486721 + L1MEd LINE L1 80 367 -5752 360 0 0 0 chr15 44893936 44893976 -56486545 + (CA)n Simple_repeat Simple_repeat 1 40 0 1573 95 0 0 chr15 44894143 44894364 -56486157 + L1PA13 LINE L1 5942 6162 -1 979 258 72 30 chr15 44894398 44894997 -56485524 + L1MEd LINE L1 718 1378 -4862 317 269 61 20 chr15 44895029 44895273 -56485248 + L1M2 LINE L1 2204 2334 -875 11884 165 35 46 chr15 44895330 44898306 -56482215 - L1MA6 LINE L1 0 6300 3385 1778 171 0 27 chr15 44898306 44898605 -56481916 - AluJo SINE Alu -21 291 1 11884 165 35 46 chr15 44898605 44899427 -56481094 - L1MA6 LINE L1 -2915 3385 2555 484 256 145 12 chr15 44899494 44899893 -56480628 + L1M2 LINE L1 2962 3413 -3435 368 307 67 13 chr15 44900042 44900192 -56480329 - L3 LINE CR1 -7 1570 1413 1003 237 55 129 chr15 44900636 44900695 -56479826 - HAL1 LINE L1 -111 2396 2334 1863 42 15 42 chr15 44900695 44900957 -56479564 - L1PA13 LINE L1 0 6163 5909 1003 237 55 129 chr15 44900957 44900983 -56479538 - HAL1 LINE L1 -173 2334 2308 1911 156 3 0 chr15 44900983 44901284 -56479237 - AluJb SINE Alu -10 302 1 1003 237 55 129 chr15 44901284 44902023 -56478498 - HAL1 LINE L1 -199 2308 1657 1950 135 4 7 chr15 44902023 44902304 -56478217 - AluJb SINE Alu -30 282 3 1003 237 55 129 chr15 44902304 44902491 -56478030 - HAL1 LINE L1 -850 1657 1458 525 149 0 0 chr15 44902616 44902703 -56477818 + AluJ/FRAM SINE Alu 216 302 -10 24 0 0 0 chr15 44902703 44902727 -56477794 + AT_rich Low_complexity Low_complexity 1 24 0 227 247 108 0 chr15 44902774 44902867 -56477654 + L1ME4a LINE L1 5968 6070 -51 1940 172 0 0 chr15 44903062 44903365 -56477156 - AluJb SINE Alu -9 303 1 363 291 45 77 chr15 44903365 44903585 -56476936 - L1MC4 LINE L1 -3 8039 7827 339 233 12 0 chr15 44903691 44903777 -56476744 - L1ME2 LINE L1 -30 6134 6048 268 232 28 73 chr15 44903778 44903955 -56476566 - L1ME LINE L1 -4385 1876 1708 197 143 48 0 chr15 44903995 44904037 -56476484 + CT-rich Low_complexity Low_complexity 4 47 0 3034 267 46 36 chr15 44904045 44904286 -56476235 - L1ME LINE L1 -4670 1410 1173 2435 91 0 0 chr15 44904286 44904594 -56475927 + AluY SINE Alu 3 310 -1 3034 267 46 36 chr15 44904594 44905752 -56474769 - L1ME LINE L1 -4907 1173 7 299 317 61 0 chr15 44906213 44906295 -56474226 + MIR3 SINE MIR 83 169 -39 2486 74 0 0 chr15 44906298 44906595 -56473926 - AluSg SINE Alu -13 297 1 226 267 0 40 chr15 44907723 44907798 -56472723 + MER5C DNA MER1_type 253 324 0 624 279 10 25 chr15 44907866 44908070 -56472451 - LTR33 LTR ERVL -305 216 16 189 0 0 0 chr15 44908149 44908170 -56472351 + (TTA)n Simple_repeat Simple_repeat 1 21 0 495 268 7 7 chr15 44908428 44908566 -56471955 + MLT2F LTR ERVL 10 147 -516 * 578 225 17 28 chr15 44908562 44908740 -56471781 + MLT1E3 LTR MaLR 46 221 -403 369 292 53 67 chr15 44908583 44908939 -56471582 + MLT2C1 LTR ERVL 45 395 -2 * 3250 144 50 3 chr15 44911703 44912305 -56468216 - LTR34 LTR ERV1 0 699 70 252 263 0 0 chr15 44912298 44912355 -56468166 - MLT1L LTR MaLR -231 384 328 * 421 259 43 7 chr15 44912437 44912576 -56467945 - MLT1L LTR MaLR -337 278 135 267 325 50 8 chr15 44913113 44913233 -56467288 + MIR SINE MIR 125 249 -13 632 176 54 0 chr15 44914291 44914439 -56466082 + L1MC3 LINE L1 7620 7775 -10 499 315 64 15 chr15 44915451 44915654 -56464867 + MIR SINE MIR 47 259 -3 2404 96 3 0 chr15 44916119 44916431 -56464090 - AluSq SINE Alu 0 313 1 383 176 45 182 chr15 44917474 44917523 -56462998 + L1MC4 LINE L1 7699 7753 -289 1547 179 20 36 chr15 44917523 44917824 -56462697 + AluJo SINE Alu 1 296 -16 383 176 45 182 chr15 44917824 44918104 -56462417 + L1MC4 LINE L1 7753 7983 -59 361 242 131 81 chr15 44918665 44918863 -56461658 + L1MEd LINE L1 943 1150 -4969 775 285 69 14 chr15 44918887 44919178 -56461343 + L2 LINE L2 3003 3309 -4 383 176 45 182 chr15 44919269 44919318 -56461203 + L1MC4 LINE L1 7699 7753 -289 1547 179 20 36 chr15 44919318 44919619 -56460902 + AluJo SINE Alu 1 296 -16 383 176 45 182 chr15 44919619 44919899 -56460622 + L1MC4 LINE L1 7753 7983 -59 259 269 164 8 chr15 44920100 44920234 -56460287 + L1M4b LINE L1 91 245 -6614 444 272 120 76 chr15 44920427 44920784 -56459737 + L1M4b LINE L1 828 1200 -5655 560 262 90 9 chr15 44920822 44921094 -56459427 + L1M4b LINE L1 1180 1477 -5382 1357 142 85 4 chr15 44921104 44921364 -56459157 + L1MB1 LINE L1 5888 6168 0 6153 86 9 15 chr15 44921476 44922750 -56457771 + L1PA8A LINE L1 4867 6129 -2 249 206 32 0 chr15 44922795 44922858 -56457663 - L1M4b LINE L1 -5303 1556 1492 1381 171 121 8 chr15 44922895 44923152 -56457369 + AluJo SINE Alu 1 286 -26 1108 148 43 10 chr15 44923206 44923415 -56457106 + L1MA4 LINE L1 6079 6294 -6 4678 255 65 28 chr15 44923415 44925517 -56455004 + L1M4b LINE L1 1758 3953 -3004 2255 99 3 13 chr15 44925517 44925830 -56454691 + AluSx SINE Alu 1 310 -2 4678 255 65 28 chr15 44925830 44926524 -56453997 + L1M4b LINE L1 3953 4620 -2337 33 43 0 0 chr15 44929917 44929964 -56450557 + AT_rich Low_complexity Low_complexity 1 47 0 336 330 118 38 chr15 44930637 44931028 -56449493 - L1M4 LINE L1 -3594 2552 2131 1059 80 7 0 chr15 44931176 44931314 -56449207 - AluJb SINE Alu -1 311 173 1179 150 0 0 chr15 44931692 44931865 -56448656 - FRAM SINE Alu -3 173 1 2186 102 7 0 chr15 44934152 44934446 -56446075 + AluSx SINE Alu 1 296 -16 355 237 131 81 chr15 44935108 44935306 -56445215 + L1MEd LINE L1 943 1150 -4969 23 0 0 0 chr15 44936276 44936299 -56444222 + AT_rich Low_complexity Low_complexity 1 23 0 2324 99 0 0 chr15 44937051 44937344 -56443177 + AluSx SINE Alu 1 293 -19 523 281 111 0 chr15 44937955 44938279 -56442242 + L1ME4a LINE L1 5710 6069 -52 198 0 0 0 chr15 44938923 44938945 -56441576 + (TG)n Simple_repeat Simple_repeat 1 22 0 440 206 81 38 chr15 44938945 44939105 -56441416 - LTR7 LTR ERV1 -46 404 238 239 371 65 8 chr15 44939226 44939350 -56441171 + MIR SINE MIR 25 155 -107 25 0 0 0 chr15 44939799 44939824 -56440697 + AT_rich Low_complexity Low_complexity 1 25 0 243 340 136 48 chr15 44940121 44940415 -56440106 - L2 LINE L2 -5 3267 2948 613 315 45 38 chr15 44940443 44940710 -56439811 - L2 LINE L2 -447 2867 2599 384 324 79 86 chr15 44940791 44941245 -56439276 - L2 LINE L2 -1 3271 2821 414 265 39 0 chr15 44941594 44941696 -56438825 + L2 LINE L2 3203 3308 -5 261 297 0 0 chr15 44942225 44942300 -56438221 + MIR SINE MIR 44 118 -90 3098 220 64 69 chr15 44942330 44942643 -56437878 + L1MC4 LINE L1 6749 7062 -980 237 108 0 0 chr15 44942643 44942680 -56437841 + (TAGG)n Simple_repeat Simple_repeat 3 39 0 3098 220 64 69 chr15 44942680 44943667 -56436854 + L1MC4 LINE L1 7062 8042 0 210 284 0 15 chr15 44943681 44943748 -56436773 + MIR SINE MIR 184 249 -13 27 49 0 0 chr15 44943772 44943813 -56436708 + AT_rich Low_complexity Low_complexity 1 41 0 565 249 41 32 chr15 44944046 44944267 -56436254 + L1ME3A LINE L1 5727 5949 -221 866 123 10 123 chr15 44946602 44946797 -56433724 - AluSg/x SINE Alu -6 306 134 240 196 0 36 chr15 44948122 44948178 -56432343 + MIR3 SINE MIR 142 195 -13 1162 55 0 0 chr15 44948974 44949119 -56431402 - L1PA8 LINE L1 -7 6165 6021 243 277 0 0 chr15 44950203 44950268 -56430253 + (TA)n Simple_repeat Simple_repeat 2 66 0 486 283 83 46 chr15 44950669 44950909 -56429612 + MIR SINE MIR 7 255 -7 283 297 59 20 chr15 44950932 44951033 -56429488 + MIR3 SINE MIR 88 192 -16 948 164 41 0 chr15 44951479 44951650 -56428871 + MER5B DNA MER1_type 1 178 0 587 225 87 64 chr15 44951855 44951906 -56428615 + MER5A DNA MER1_type 10 58 -131 2272 106 0 3 chr15 44951906 44952208 -56428313 + AluSx SINE Alu 1 301 -11 587 225 87 64 chr15 44952208 44952329 -56428192 + MER5A DNA MER1_type 58 186 -3 948 164 41 0 chr15 44953431 44953602 -56426919 + MER5B DNA MER1_type 1 178 0 587 225 87 64 chr15 44953807 44953858 -56426663 + MER5A DNA MER1_type 10 58 -131 2288 105 0 3 chr15 44953858 44954162 -56426359 + AluSx SINE Alu 1 303 -9 587 225 87 64 chr15 44954162 44954283 -56426238 + MER5A DNA MER1_type 58 186 -3 255 266 35 53 chr15 44955003 44955172 -56425349 - L1M4 LINE L1 -1472 4674 4509 263 303 0 81 chr15 44955233 44955332 -56425189 + L3b LINE CR1 1244 1334 -249 261 214 57 0 chr15 44955413 44955483 -56425038 - MIR SINE MIR -34 228 155 21 36 0 0 chr15 44956816 44956844 -56423677 + AT_rich Low_complexity Low_complexity 1 28 0 858 261 47 0 chr15 44956865 44957080 -56423441 + Charlie1 DNA MER1_type 20 244 -2517 586 139 148 0 chr15 44957061 44957183 -56423338 + Charlie1 DNA MER1_type 2622 2761 0 * 2424 80 3 0 chr15 44958816 44959115 -56421406 + AluSx SINE Alu 1 300 -12 273 281 0 34 chr15 44960615 44960704 -56419817 + L1MD2 LINE L1 5997 6082 -277 247 91 45 0 chr15 44960786 44960830 -56419691 - L1PA7 LINE L1 -1 6153 6108 2640 35 3 6 chr15 44961064 44961376 -56419145 - AluY SINE Alu 0 311 1 25 0 0 0 chr15 44964352 44964377 -56416144 + AT_rich Low_complexity Low_complexity 1 25 0 1958 222 119 13 chr15 44964554 44965149 -56415372 - L1MC4a LINE L1 -1 7807 7150 333 281 10 0 chr15 44965231 44965327 -56415194 - L1ME LINE L1 -515 5606 5510 401 182 0 0 chr15 44965582 44965648 -56414873 + AluJ/FLAM SINE Alu 8 73 -229 2101 168 3 3 chr15 44967040 44967404 -56413117 - MER47A DNA MER2_type 0 366 3 1757 177 3 3 chr15 44967508 44967802 -56412719 + AluJb SINE Alu 1 294 -18 1291 253 22 25 chr15 44968592 44968956 -56411565 + L1MEc LINE L1 35 397 -5999 2051 244 124 13 chr15 44968995 44969832 -56410689 + L1MEc LINE L1 518 1447 -4949 641 266 78 64 chr15 44969830 44970457 -56410064 + L1MEc LINE L1 458 1093 -5112 * 31 0 0 0 chr15 44970766 44970797 -56409724 + AT_rich Low_complexity Low_complexity 1 31 0 310 235 205 42 chr15 44970850 44971007 -56409514 + L1MEc LINE L1 1527 1714 -4682 1266 163 23 42 chr15 44971007 44971313 -56409208 + L1MB8 LINE L1 5879 6178 0 353 260 71 52 chr15 44971825 44971979 -56408542 + L1ME4a LINE L1 5571 5727 -394 280 179 57 66 chr15 44972164 44972270 -56408251 + L1ME4a LINE L1 5985 6089 -32 1961 195 100 11 chr15 44972303 44972764 -56407757 + L1MC3 LINE L1 7284 7785 0 345 62 0 0 chr15 44972851 44972899 -56407622 + (TG)n Simple_repeat Simple_repeat 1 48 0 21 71 0 0 chr15 44973067 44973109 -56407412 + AT_rich Low_complexity Low_complexity 1 42 0 2350 88 3 0 chr15 44974052 44974349 -56406172 + AluSp SINE Alu 1 298 -15 237 287 115 25 chr15 44974652 44974774 -56405747 + MIR3 SINE MIR 40 172 -36 449 258 129 49 chr15 44974886 44975111 -56405410 - MIR SINE MIR 0 262 20 249 298 9 53 chr15 44976113 44976227 -56404294 + L2 LINE L2 3137 3245 -27 21 0 0 0 chr15 44976753 44976774 -56403747 + AT_rich Low_complexity Low_complexity 1 21 0 231 227 45 45 chr15 44977416 44977482 -56403039 - MIR3 SINE MIR -51 157 92 955 274 102 14 chr15 44978553 44978984 -56401537 + Tigger8 DNA MER2_type 196 664 -2 292 200 46 0 chr15 44979010 44979075 -56401446 + L1ME4a LINE L1 5977 6044 -77 353 171 11 0 chr15 44979132 44979220 -56401301 + (TA)n Simple_repeat Simple_repeat 2 90 0 214 244 22 0 chr15 44979724 44979769 -56400752 + L3 LINE CR1 1520 1565 -12 386 109 31 0 chr15 44981241 44981305 -56399216 + Alu SINE Alu 230 295 -5 375 181 0 0 chr15 44981908 44981980 -56398541 - L1PA16 LINE L1 -16 6150 6079 21 0 0 0 chr15 44982063 44982084 -56398437 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr15 44982453 44982473 -56398048 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 2080 137 3 13 chr15 44982549 44982856 -56397665 - AluJb SINE Alu -8 304 1 259 203 0 25 chr15 44982917 44982996 -56397525 + (TAAA)n Simple_repeat Simple_repeat 2 78 0 2400 75 0 34 chr15 44983709 44984030 -56396491 - AluSx SINE Alu -2 310 1 2297 170 59 43 chr15 44984865 44985358 -56395163 + MLT1D LTR MaLR 5 505 0 558 294 108 30 chr15 44985599 44985868 -56394653 - L2 LINE L2 -38 3275 2986 306 187 94 158 chr15 44985929 44985962 -56394559 + MARNA DNA Mariner 210 244 -342 2234 95 3 3 chr15 44985962 44986258 -56394263 - AluSq SINE Alu -17 296 1 306 187 94 158 chr15 44986258 44986395 -56394126 + MARNA DNA Mariner 244 369 -217 1617 119 123 8 chr15 44986928 44987207 -56393314 - AluSg1 SINE Alu 0 308 1 41 0 0 0 chr15 44987209 44987250 -56393271 + AT_rich Low_complexity Low_complexity 1 41 0 2163 87 11 0 chr15 44987394 44987680 -56392841 - AluY SINE Alu -22 289 1 2143 107 3 20 chr15 44988211 44988510 -56392011 - AluSx SINE Alu -16 296 3 217 293 129 9 chr15 44988556 44988672 -56391849 + MIR3 SINE MIR 40 169 -39 678 191 92 72 chr15 44988917 44989168 -56391353 - MER112 DNA MER1_type 0 256 1 743 170 63 6 chr15 44989435 44989594 -56390927 + L1PA16 LINE L1 5996 6163 -3 22 80 0 0 chr15 44990869 44990919 -56389602 + AT_rich Low_complexity Low_complexity 1 50 0 274 235 0 0 chr15 44990928 44990979 -56389542 - tRNA-Asp-GAC tRNA tRNA -24 51 1 1148 204 21 41 chr15 44991027 44991366 -56389155 - L1MC5 LINE L1 -29 7932 7601 315 0 0 0 chr15 44991680 44991715 -56388806 + (CA)n Simple_repeat Simple_repeat 2 36 0 2093 108 24 10 chr15 44997202 44997498 -56383023 + AluSx SINE Alu 1 300 -12 26 30 0 0 chr15 44998879 44998912 -56381609 + AT_rich Low_complexity Low_complexity 1 33 0 445 255 107 104 chr15 44999406 44999743 -56380778 - MER102b DNA MER1_type -3 338 1 280 259 0 0 chr15 44999998 45000056 -56380465 - MIR SINE MIR -8 254 197 643 291 76 61 chr15 45000063 45000662 -56379859 + L2 LINE L2 2633 3261 -52 489 222 64 35 chr15 45002150 45002321 -56378200 - MER104 DNA MER2_type -4 176 1 1359 13 0 0 chr15 45002818 45002970 -56377551 + AluYb8 SINE Alu 155 306 -12 331 297 108 42 chr15 45003850 45004136 -56376385 + L1M4 LINE L1 5270 5574 -600 240 245 302 0 chr15 45004515 45004621 -56375900 + L2 LINE L2 3172 3309 -4 225 306 0 0 chr15 45004648 45004710 -56375811 - L2 LINE L2 0 3313 3252 569 271 92 24 chr15 45004929 45005136 -56375385 + MIR SINE MIR 1 221 -41 212 194 0 0 chr15 45007777 45007813 -56372708 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 584 277 25 35 chr15 45008125 45008327 -56372194 - MIR SINE MIR -49 213 14 415 303 74 6 chr15 45009236 45009398 -56371123 + MIR SINE MIR 20 192 -70 244 231 19 0 chr15 45009716 45009768 -56370753 - L2 LINE L2 -6 3307 3255 449 211 105 0 chr15 45010239 45010353 -56370168 + MLT1C LTR MaLR 8 133 -334 1005 230 131 17 chr15 45010461 45010752 -56369769 + MLT1C LTR MaLR 142 465 -2 2051 133 3 0 chr15 45011331 45011632 -56368889 + AluSx SINE Alu 5 306 -6 189 100 0 0 chr15 45011851 45011864 -56368657 + (TAAG)n Simple_repeat Simple_repeat 2 14 -17 2152 84 0 52 chr15 45011864 45012173 -56368348 + AluY SINE Alu 1 293 -18 189 100 0 0 chr15 45012173 45012189 -56368332 + (TAAG)n Simple_repeat Simple_repeat 13 31 0 21 0 0 0 chr15 45012686 45012707 -56367814 + AT_rich Low_complexity Low_complexity 1 21 0 442 220 106 23 chr15 45012792 45012924 -56367597 - LTR16A1 LTR ERVL -49 408 266 1204 153 70 8 chr15 45013425 45013667 -56366854 - L1MD1 LINE L1 -7 6235 5979 1035 181 0 6 chr15 45013667 45013838 -56366683 - MLT1A1 LTR MaLR -2 363 194 325 73 0 0 chr15 45013938 45013979 -56366542 - MLT1A1 LTR MaLR -324 41 1 3085 167 41 28 chr15 45013982 45014043 -56366478 - L1MD1 LINE L1 -271 5971 5912 195 42 0 0 chr15 45014043 45014067 -56366454 + (TA)n Simple_repeat Simple_repeat 1 24 0 3085 167 41 28 chr15 45014067 45014652 -56365869 - L1MD1 LINE L1 -330 5912 5313 1858 152 7 3 chr15 45014652 45014954 -56365567 - AluSx SINE Alu -9 303 1 3085 167 41 28 chr15 45014954 45014995 -56365526 - L1MD1 LINE L1 -929 5313 5274 370 278 139 0 chr15 45015106 45015250 -56365271 - AluSc SINE Alu -8 291 128 2350 201 46 28 chr15 45015355 45015796 -56364725 - L1MC/D LINE L1 -480 5998 5566 2324 99 3 0 chr15 45015796 45016098 -56364423 - AluSx SINE Alu -9 303 1 2350 201 46 28 chr15 45016098 45016256 -56364265 - L1MC/D LINE L1 -912 5566 5412 2005 120 17 3 chr15 45016256 45016547 -56363974 - AluSx SINE Alu -17 295 1 2350 201 46 28 chr15 45016547 45016771 -56363750 - L1MC/D LINE L1 -1066 5412 5150 2057 165 39 35 chr15 45016771 45017320 -56363201 - MLT2A2 LTR ERVL 0 554 1 5074 228 40 41 chr15 45017320 45018248 -56362273 - L1MC/D LINE L1 -1228 5154 4226 1580 194 3 11 chr15 45018248 45018532 -56361989 - AluJb SINE Alu -20 292 11 312 203 0 0 chr15 45018483 45018542 -56361979 - AluS SINE Alu -242 59 1 * 5074 228 40 41 chr15 45018542 45019233 -56361288 - L1MC/D LINE L1 -2166 4216 3527 854 245 49 21 chr15 45019742 45020196 -56360325 + LTR33 LTR ERVL 1 499 -22 358 298 23 8 chr15 45021211 45021342 -56359179 - MIR3 SINE MIR -3 205 73 198 128 0 0 chr15 45021661 45021700 -56358821 + (T)n Simple_repeat Simple_repeat 1 39 0 1632 153 23 0 chr15 45022767 45023029 -56357492 - AluSg SINE Alu -14 296 29 317 215 32 11 chr15 45023757 45023850 -56356671 + L1MC4 LINE L1 7701 7795 -247 2080 204 37 34 chr15 45023950 45024406 -56356115 - L1MC/D LINE L1 -3444 2938 2485 2235 118 3 0 chr15 45024406 45024710 -56355811 + AluSx SINE Alu 2 306 -6 2080 204 37 34 chr15 45024710 45025156 -56355365 - L1MC/D LINE L1 -3897 2485 2017 592 188 10 0 chr15 45025170 45025271 -56355250 + Tigger3(Golem) DNA MER2_type 2 103 -2926 6621 141 22 15 chr15 45025277 45026476 -56354045 + Tigger3(Golem) DNA MER2_type 1821 3028 -1 2833 223 49 34 chr15 45026492 45026756 -56353765 - L1MC/D LINE L1 -4488 1896 1637 2198 123 0 3 chr15 45026756 45027065 -56353456 + AluSq SINE Alu 1 308 -5 2833 223 49 34 chr15 45027065 45027998 -56352523 - L1MC/D LINE L1 -4747 1637 800 691 271 45 90 chr15 45028370 45028791 -56351730 - L1M3d LINE L1 -5487 644 3 236 245 0 0 chr15 45029850 45029903 -56350618 - L2 LINE L2 0 3313 3261 1813 136 7 49 chr15 45030663 45030971 -56349550 + AluSx SINE Alu 1 295 -17 354 317 48 0 chr15 45030971 45031075 -56349446 - MIR SINE MIR -149 113 5 28 79 0 0 chr15 45032292 45032355 -56348166 + AT_rich Low_complexity Low_complexity 1 63 0 381 241 13 26 chr15 45032754 45032900 -56347621 + L1ME LINE L1 5678 5824 -297 1107 209 5 0 chr15 45032977 45033183 -56347338 + MER82 DNA MER2_type 447 653 0 235 260 83 39 chr15 45033468 45033649 -56346872 + L1 LINE L1 4800 4988 -1158 625 313 58 7 chr15 45033715 45033990 -56346531 + L1 LINE L1 3080 3368 -2778 1038 275 69 3 chr15 45034607 45034927 -56345594 + MLT1J LTR MaLR 1 341 -170 337 104 0 0 chr15 45035418 45035466 -56345055 - tRNA-Thr-ACT tRNA tRNA -29 48 1 557 300 142 3 chr15 45036236 45036559 -56343962 + LTR16A LTR ERVL 78 445 -5 1799 172 13 7 chr15 45037418 45037726 -56342795 + AluJb SINE Alu 1 310 -2 1353 205 72 74 chr15 45037726 45038156 -56342365 + MLT1C LTR MaLR 39 467 0 24 0 0 0 chr15 45038816 45038840 -56341681 + AT_rich Low_complexity Low_complexity 1 24 0 238 282 164 58 chr15 45039004 45039367 -56341154 + L2 LINE L2 2646 3083 -189 2383 116 31 0 chr15 45039390 45039743 -56340778 + THE1B LTR MaLR 1 364 0 797 259 62 16 chr15 45040112 45040578 -56339943 + Charlie7 DNA MER1_type 180 722 -1890 872 220 0 0 chr15 45040771 45040930 -56339591 - FRAM SINE Alu -7 159 1 693 292 46 5 chr15 45040958 45041153 -56339368 + MIR SINE MIR 47 249 -13 437 312 118 76 chr15 45041192 45041522 -56338999 + L2 LINE L2 2928 3271 -1 2484 74 3 0 chr15 45042488 45042798 -56337723 + AluSp SINE Alu 1 311 -2 489 331 98 42 chr15 45043999 45044334 -56336187 + L2 LINE L2 2914 3267 -5 2084 126 0 0 chr15 45044688 45044973 -56335548 + AluSx SINE Alu 1 285 -27 206 0 69 0 chr15 45044976 45045005 -56335516 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 30 0 0 0 chr15 45045119 45045149 -56335372 + AT_rich Low_complexity Low_complexity 1 30 0 257 355 163 35 chr15 45046515 45046884 -56333637 - L2 LINE L2 -551 2763 2348 365 259 47 53 chr15 45047104 45047274 -56333247 + L1MC4 LINE L1 7873 8041 -1 2202 113 0 28 chr15 45047389 45047739 -56332782 + AluSx SINE Alu 1 312 0 5722 161 30 14 chr15 45047741 45049748 -56330773 + L1PA16 LINE L1 4118 6156 -10 1322 143 0 17 chr15 45049748 45049977 -56330544 + L1PA15 LINE L1 5940 6165 0 5722 161 30 14 chr15 45049977 45049989 -56330532 + L1PA16 LINE L1 6156 6166 0 235 254 0 0 chr15 45052378 45052433 -56328088 + (TA)n Simple_repeat Simple_repeat 2 56 0 27 0 0 0 chr15 45052603 45052630 -56327891 + AT_rich Low_complexity Low_complexity 1 27 0 240 305 105 77 chr15 45053500 45053785 -56326736 + L3b LINE CR1 1137 1429 -154 333 0 0 0 chr15 45054078 45054115 -56326406 + (TG)n Simple_repeat Simple_repeat 1 37 0 222 304 0 14 chr15 45054340 45054409 -56326112 + L2 LINE L2 3246 3313 0 885 152 0 55 chr15 45054674 45054839 -56325682 + FAM SINE Alu 1 44 -5 1761 115 37 8 chr15 45055003 45055247 -56325274 + AluSq SINE Alu 1 251 -62 326 242 73 20 chr15 45055579 45055676 -56324845 + MIR SINE MIR 8 108 -100 797 163 0 8 chr15 45055991 45056120 -56324401 - FLAM_A SINE Alu -5 128 1 569 269 153 34 chr15 45057998 45058533 -56321988 - L1ME4a LINE L1 -2 6119 5521 608 290 21 21 chr15 45058713 45058906 -56321615 + MIR SINE MIR 70 262 0 224 282 47 47 chr15 45059002 45059087 -56321434 - MIR SINE MIR 0 262 178 2698 42 0 0 chr15 45059296 45059605 -56320916 - AluY SINE Alu -2 309 1 338 350 42 21 chr15 45060389 45060532 -56319989 - MIR SINE MIR -108 154 9 316 222 0 0 chr15 45061254 45061317 -56319204 - L2 LINE L2 -3 3269 3207 667 268 63 66 chr15 45061840 45062016 -56318505 - L2 LINE L2 0 3313 3137 517 104 26 0 chr15 45062016 45062093 -56318428 - MADE1 DNA Mariner 0 80 2 667 268 63 66 chr15 45062093 45062233 -56318288 - L2 LINE L2 -176 3137 2998 261 75 0 0 chr15 45062275 45062315 -56318206 + (CA)n Simple_repeat Simple_repeat 2 41 0 381 250 78 23 chr15 45064377 45064505 -56316016 - MIR SINE MIR -28 234 100 256 150 0 0 chr15 45064623 45064663 -56315858 - tRNA-Thr-ACT tRNA tRNA -37 40 1 511 83 0 14 chr15 45065477 45065549 -56314972 + Alu SINE Alu 225 295 -17 231 254 18 0 chr15 45067212 45067267 -56313254 + MLT1K LTR MaLR 145 200 -388 252 290 0 29 chr15 45067345 45067414 -56313107 + MLT1K LTR MaLR 322 388 -200 502 260 53 12 chr15 45067798 45067967 -56312554 + L1ME3A LINE L1 5572 5747 -423 700 209 165 12 chr15 45068017 45068271 -56312250 + L1ME3A LINE L1 5870 6162 -8 2396 71 10 0 chr15 45068321 45068618 -56311903 + AluY SINE Alu 1 300 -11 361 241 214 21 chr15 45068729 45068916 -56311605 + L1M4 LINE L1 4485 4707 -1439 14296 85 38 2 chr15 45069204 45071253 -56309268 + Charlie3 DNA MER1_type 1 2122 -588 393 91 0 0 chr15 45071253 45071308 -56309213 - MLT2A1 LTR ERVL 0 444 390 261 211 0 0 chr15 45071308 45071365 -56309156 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 3295 55 2 2 chr15 45071367 45071767 -56308754 - MLT2A1 LTR ERVL -44 400 1 * 3700 75 42 2 chr15 45071767 45072247 -56308274 + Charlie3 DNA MER1_type 2118 2616 -94 415 236 160 0 chr15 45075686 45075830 -56304691 + MIR SINE MIR 25 191 -71 375 41 0 0 chr15 45075833 45075882 -56304639 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr15 45076146 45076168 -56304353 + AT_rich Low_complexity Low_complexity 1 22 0 216 100 0 25 chr15 45076210 45076250 -56304271 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 452 203 89 141 chr15 45078060 45078298 -56302223 - MIR SINE MIR -27 235 17 23 33 0 0 chr15 45079375 45079405 -56301116 + AT_rich Low_complexity Low_complexity 1 30 0 195 299 119 0 chr15 45079505 45079572 -56300949 + L3 LINE CR1 1492 1566 -11 548 243 72 20 chr15 45080121 45080273 -56300248 + MIR SINE MIR 68 227 -35 2225 89 7 0 chr15 45080838 45081120 -56299401 + AluSg SINE Alu 1 284 -26 28 48 0 0 chr15 45081120 45081162 -56299359 + AT_rich Low_complexity Low_complexity 1 42 0 274 331 34 69 chr15 45081351 45081613 -56298908 + MIR3 SINE MIR 15 262 0 669 215 60 7 chr15 45082142 45082291 -56298230 + MIR SINE MIR 2 158 -104 1847 214 25 23 chr15 45082302 45082783 -56297738 + L1 LINE L1 2926 3407 -2739 4709 115 12 22 chr15 45082786 45083474 -56297047 + L1MB3 LINE L1 5452 6134 -49 1842 127 51 14 chr15 45083474 45083766 -56296755 + AluSx SINE Alu 1 303 -9 4709 115 12 22 chr15 45083766 45083808 -56296713 + L1MB3 LINE L1 6134 6175 -8 237 281 0 0 chr15 45083838 45083895 -56296626 + MIR SINE MIR 203 259 -3 450 328 11 17 chr15 45084246 45084423 -56296098 + MIR3 SINE MIR 3 178 -30 2496 74 0 0 chr15 45084426 45084736 -56295785 + AluY SINE Alu 2 311 0 707 326 12 12 chr15 45084858 45085100 -56295421 - MIR SINE MIR 0 262 21 261 294 28 49 chr15 45085215 45085358 -56295163 - MIR3 SINE MIR 0 208 69 195 266 31 0 chr15 45085690 45085754 -56294767 + MIR SINE MIR 196 261 -1 21 36 0 0 chr15 45086599 45086627 -56293894 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr15 45086700 45086729 -56293792 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2393 49 0 3 chr15 45086733 45087018 -56293503 - AluY SINE Alu -27 284 1 1413 82 0 5 chr15 45087561 45087745 -56292776 + AluSq SINE Alu 119 301 -12 209 132 26 0 chr15 45087806 45087844 -56292677 + (TAA)n Simple_repeat Simple_repeat 3 41 0 1248 180 62 5 chr15 45088207 45088418 -56292103 - MER58A DNA MER1_type -1 223 1 333 271 95 80 chr15 45088418 45088672 -56291849 + L1MC/D LINE L1 5334 5594 -2214 766 127 206 0 chr15 45088698 45088824 -56291697 + FRAM SINE Alu 4 155 -21 21 0 0 0 chr15 45089630 45089651 -56290870 + AT_rich Low_complexity Low_complexity 1 21 0 1538 161 3 63 chr15 45089651 45089968 -56290553 - AluJo SINE Alu -14 298 1 477 351 52 0 chr15 45089975 45090186 -56290335 - MIR SINE MIR -13 249 28 1580 176 7 24 chr15 45090664 45090959 -56289562 + AluJo SINE Alu 1 290 -22 747 159 0 0 chr15 45091044 45091176 -56289345 + CT-rich Low_complexity Low_complexity 1 132 0 2388 98 3 0 chr15 45091176 45091483 -56289038 - AluSx SINE Alu -4 308 1 276 30 0 0 chr15 45092372 45092405 -56288116 + (CA)n Simple_repeat Simple_repeat 1 33 0 261 0 0 0 chr15 45092620 45092649 -56287872 + (CA)n Simple_repeat Simple_repeat 2 30 0 2043 132 4 0 chr15 45094048 45094363 -56286158 + AluSx SINE Alu 1 316 0 543 272 80 6 chr15 45094646 45094808 -56285713 - MER5A DNA MER1_type -1 188 15 2214 122 3 0 chr15 45095089 45095400 -56285121 + AluSx SINE Alu 1 312 0 768 230 22 28 chr15 45095579 45095757 -56284764 - MER5B DNA MER1_type 0 178 2 1750 189 32 26 chr15 45095761 45096100 -56284421 - MER58B DNA MER1_type 0 341 1 402 276 55 16 chr15 45096577 45096704 -56283817 + MIR SINE MIR 29 160 -102 1980 155 0 3 chr15 45096783 45097086 -56283435 + AluJb SINE Alu 1 302 -10 1099 249 65 29 chr15 45097376 45097761 -56282760 + LTR16A LTR ERVL 30 428 -22 599 139 228 89 chr15 45098507 45098611 -56281910 + MER5A DNA MER1_type 9 97 -92 189 0 0 0 chr15 45098611 45098632 -56281889 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1004 181 0 12 chr15 45098633 45098793 -56281728 - FAM SINE Alu -17 158 1 599 139 228 89 chr15 45098793 45098844 -56281677 + MER5A DNA MER1_type 96 188 -1 365 305 7 64 chr15 45099087 45099228 -56281293 + MIR SINE MIR 51 183 -79 221 351 0 0 chr15 45099790 45099847 -56280674 + C-rich Low_complexity Low_complexity 1 57 0 194 231 0 26 chr15 45099990 45100029 -56280492 + L2 LINE L2 134 171 -3143 251 321 18 9 chr15 45101282 45101391 -56279130 + CT-rich Low_complexity Low_complexity 2 111 0 315 225 22 34 chr15 45101608 45101697 -56278824 + LTR67 LTR ERVL 456 543 -14 1275 127 11 0 chr15 45102082 45102271 -56278250 - AluSg/x SINE Alu -1 311 121 2509 136 3 0 chr15 45102284 45102651 -56277870 - L1PB1 LINE L1 -2 6149 5782 252 184 0 0 chr15 45102683 45102732 -56277789 + (TG)n Simple_repeat Simple_repeat 2 50 0 15698 186 33 14 chr15 45102733 45108890 -56271631 - L1P1 LINE L1 -364 6507 114 950 127 0 0 chr15 45108894 45109028 -56271493 - AluJb SINE Alu -177 135 2 345 284 86 0 chr15 45109156 45109272 -56271249 + MIR SINE MIR 26 151 -57 1482 124 66 31 chr15 45109617 45109875 -56270646 - L1MB3 LINE L1 -17 6166 5900 793 175 31 6 chr15 45109875 45110035 -56270486 - L1MB3 LINE L1 -783 5363 5200 233 226 0 19 chr15 45110065 45110118 -56270403 - L2 LINE L2 -5 3267 3216 405 0 0 0 chr15 45111142 45111187 -56269334 + (CA)n Simple_repeat Simple_repeat 1 45 0 441 0 0 0 chr15 45112112 45112161 -56268360 + (TG)n Simple_repeat Simple_repeat 2 50 0 1666 194 41 0 chr15 45114164 45114457 -56266064 - AluJb SINE Alu -7 305 1 542 242 8 0 chr15 45114526 45114646 -56265875 + L2 LINE L2 2949 3069 -244 2525 55 0 23 chr15 45114880 45115188 -56265333 - AluY SINE Alu -9 302 2 490 104 0 15 chr15 45115375 45115442 -56265079 - AluJ/FLAM SINE Alu -245 67 2 501 241 139 100 chr15 45115488 45115670 -56264851 + L1ME4a LINE L1 5540 5713 -408 756 161 8 8 chr15 45115670 45115788 -56264733 + FLAM_C SINE Alu 1 118 -15 501 241 139 100 chr15 45115788 45115915 -56264606 + L1ME4a LINE L1 5713 5834 -287 2691 126 4 67 chr15 45115915 45116200 -56264321 + L1MB3 LINE L1 5734 5979 -204 2195 113 10 3 chr15 45116200 45116501 -56264020 - AluSq SINE Alu -10 303 1 2691 126 4 67 chr15 45116501 45116691 -56263830 + L1MB3 LINE L1 5979 6179 -4 501 241 139 100 chr15 45116691 45116940 -56263581 + L1ME4a LINE L1 5834 6121 0 314 254 44 61 chr15 45117006 45117120 -56263401 + L2 LINE L2 3128 3239 -74 201 146 49 0 chr15 45117161 45117202 -56263319 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 1617 214 83 3 chr15 45117223 45117560 -56262961 - MLT1A1 LTR MaLR 0 365 2 376 300 79 37 chr15 45117696 45117886 -56262635 + L3 LINE CR1 1119 1316 -261 258 324 0 0 chr15 45117860 45117928 -56262593 - L2 LINE L2 -4 3268 3201 * 2113 118 23 0 chr15 45118138 45118443 -56262078 + AluSx SINE Alu 1 312 0 1751 164 10 7 chr15 45118504 45118809 -56261712 - AluJo SINE Alu -6 306 1 762 227 89 49 chr15 45120066 45120291 -56260230 + MIR SINE MIR 13 246 -16 382 377 113 21 chr15 45120579 45121046 -56259475 - L2 LINE L2 -585 2729 2220 2318 121 0 0 chr15 45121323 45121628 -56258893 - AluSx SINE Alu -7 305 1 661 311 148 22 chr15 45122349 45122886 -56257635 + L2 LINE L2 2670 3272 0 226 315 32 14 chr15 45124281 45124406 -56256115 - MIR SINE MIR -62 146 40 996 104 0 0 chr15 45125383 45125517 -56255004 + FRAM SINE Alu 28 161 -15 367 301 84 52 chr15 45125737 45126023 -56254498 + L2 LINE L2 1800 2094 -1220 532 212 30 0 chr15 45126060 45126159 -56254362 + MER5B DNA MER1_type 1 102 -76 561 155 138 0 chr15 45126512 45126628 -56253893 + MER58B DNA MER1_type 182 313 -28 869 240 125 48 chr15 45128457 45129025 -56251496 + L1MC4a LINE L1 5317 5967 -1841 2090 104 7 4 chr15 45129396 45129674 -56250847 + AluSq SINE Alu 1 279 -34 308 210 161 0 chr15 45129914 45129995 -56250526 - MIR SINE MIR -80 182 89 1548 135 93 3 chr15 45131823 45132112 -56248409 - MER46B DNA MER2_type 0 236 47 5424 123 43 8 chr15 45132113 45133069 -56247452 + L1MA5 LINE L1 5312 6300 0 247 103 0 0 chr15 45133093 45133132 -56247389 + Tigger4(Zombi) DNA MER2_type 25 63 -2668 22 35 0 0 chr15 45133662 45133691 -56246830 + AT_rich Low_complexity Low_complexity 1 29 0 2811 166 28 0 chr15 45134537 45135068 -56245453 + L1MB7 LINE L1 5631 6176 -8 219 200 27 13 chr15 45135625 45135700 -56244821 + CT-rich Low_complexity Low_complexity 3 78 0 4629 159 28 14 chr15 45137017 45137989 -56242532 + L1MB8 LINE L1 5188 6173 -5 209 114 29 0 chr15 45138074 45138109 -56242412 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 351 240 33 120 chr15 45138154 45138337 -56242184 + L2 LINE L2 3060 3226 -46 369 204 272 31 chr15 45138878 45139040 -56241481 + L2 LINE L2 3113 3313 0 1077 96 120 0 chr15 45139446 45139613 -56240908 + MSTA LTR MaLR 242 428 0 755 175 7 7 chr15 45140112 45140249 -56240272 - FLAM_C SINE Alu -6 137 1 297 264 132 11 chr15 45140258 45140349 -56240172 - MIR SINE MIR -67 141 40 601 239 72 19 chr15 45141338 45141686 -56238835 + MLT1I LTR MaLR 1 409 0 882 267 8 8 chr15 45141708 45141966 -56238555 + MIR SINE MIR 3 260 -2 314 330 48 0 chr15 45142399 45142502 -56238019 + L2 LINE L2 3158 3265 -7 307 288 162 18 chr15 45143897 45144008 -56236513 - MIR3 SINE MIR -22 186 60 * 323 360 150 21 chr15 45143951 45144471 -56236050 - L2 LINE L2 -1158 2156 1570 1395 171 8 8 chr15 45144629 45144869 -56235652 - L1PB4 LINE L1 -17 6139 5900 4123 162 14 4 chr15 45145957 45146716 -56233805 - L1MA9 LINE L1 -146 6166 5400 207 374 33 0 chr15 45147579 45147670 -56232851 - MIR3 SINE MIR -4 204 111 29371 94 12 31 chr15 45147899 45150107 -56230414 + L1P3 LINE L1 718 2965 -3504 2208 117 0 0 chr15 45150107 45150398 -56230123 - AluSx SINE Alu -21 291 1 29371 94 12 31 chr15 45150398 45153324 -56227197 + L1P3 LINE L1 2965 5805 -664 471 240 47 16 chr15 45154854 45154983 -56225538 + MIR SINE MIR 104 236 -26 23 33 0 0 chr15 45155456 45155486 -56225035 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr15 45155645 45155683 -56224838 + AT_rich Low_complexity Low_complexity 1 38 0 192 158 0 0 chr15 45159156 45159194 -56221327 + CT-rich Low_complexity Low_complexity 1 38 0 378 0 0 0 chr15 45159709 45159751 -56220770 + (TG)n Simple_repeat Simple_repeat 2 43 0 708 238 26 7 chr15 45159751 45159902 -56220619 - AluJb SINE Alu -28 284 131 213 158 0 0 chr15 45160428 45160466 -56220055 + L2 LINE L2 1351 1388 -1926 247 290 121 54 chr15 45160703 45160998 -56219523 + L2 LINE L2 2748 3063 -209 23 33 0 0 chr15 45161190 45161220 -56219301 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr15 45162182 45162211 -56218310 + AT_rich Low_complexity Low_complexity 1 29 0 734 64 37 18 chr15 45162217 45162326 -56218195 - HY1 scRNA scRNA -1 111 1 2100 99 35 0 chr15 45163900 45164182 -56216339 + AluSp SINE Alu 1 292 -21 455 181 0 0 chr15 45165027 45165110 -56215411 - FLAM_A SINE Alu -50 92 10 280 305 107 30 chr15 45165167 45165298 -56215223 - L2 LINE L2 -6 3266 3126 675 202 0 23 chr15 45166941 45167070 -56213451 + FLAM_A SINE Alu 1 126 -7 1972 102 8 8 chr15 45167198 45167463 -56213058 + AluSx SINE Alu 1 265 -47 270 0 0 0 chr15 45167473 45167503 -56213018 + (CA)n Simple_repeat Simple_repeat 2 31 0 1905 178 0 9 chr15 45167845 45168160 -56212361 - AluJb SINE Alu 0 312 1 324 268 14 94 chr15 45168180 45168318 -56212203 + L2 LINE L2 3146 3272 0 224 317 185 44 chr15 45169299 45169526 -56210995 + L3 LINE CR1 919 1177 -400 283 341 85 18 chr15 45169568 45169732 -56210789 - MIR SINE MIR -59 203 29 2205 82 4 4 chr15 45170636 45170943 -56209578 - AluSc SINE Alu 0 307 1 389 350 152 39 chr15 45171121 45171979 -56208542 + L2 LINE L2 1521 2475 -839 220 241 25 0 chr15 45172038 45172117 -56208404 + (TA)n Simple_repeat Simple_repeat 1 81 0 276 146 19 39 chr15 45172176 45172279 -56208242 + (TA)n Simple_repeat Simple_repeat 2 102 0 903 226 115 0 chr15 45172354 45172588 -56207933 - MIR SINE MIR 0 262 2 1181 295 111 6 chr15 45173227 45173762 -56206759 - L2 LINE L2 -283 3030 2436 306 180 0 0 chr15 45173773 45173834 -56206687 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr15 45173834 45173855 -56206666 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr15 45174067 45174095 -56206426 + AT_rich Low_complexity Low_complexity 1 28 0 398 326 65 40 chr15 45174424 45174746 -56205775 + L1MC4 LINE L1 7491 7820 -222 2206 93 0 39 chr15 45175618 45175929 -56204592 - AluSq SINE Alu -13 300 2 22 35 0 0 chr15 45176916 45176945 -56203576 + AT_rich Low_complexity Low_complexity 1 29 0 299 183 83 0 chr15 45176959 45177019 -56203502 - L1ME3A LINE L1 -20 6150 6086 1811 159 114 30 chr15 45177116 45177544 -56202977 + L1MD1 LINE L1 5689 6152 -90 1861 133 14 24 chr15 45177559 45177853 -56202668 - AluJo SINE Alu -21 291 1 1735 174 3 3 chr15 45177864 45178151 -56202370 - AluJo SINE Alu -25 287 1 1825 197 22 30 chr15 45178309 45178675 -56201846 + MLT1A1 LTR MaLR 1 363 -2 23 0 0 0 chr15 45179326 45179349 -56201172 + AT_rich Low_complexity Low_complexity 1 23 0 532 79 0 0 chr15 45179478 45179541 -56200980 - AluJ/FRAM SINE Alu -29 283 221 2309 81 7 7 chr15 45179643 45179941 -56200580 - AluSq SINE Alu -15 298 1 21 0 0 0 chr15 45180331 45180352 -56200169 + AT_rich Low_complexity Low_complexity 1 21 0 1829 147 27 10 chr15 45180894 45181186 -56199335 - AluJb SINE Alu -15 297 1 605 302 72 41 chr15 45181540 45182000 -56198521 - L1ME LINE L1 -370 5800 5327 237 277 109 7 chr15 45182525 45182662 -56197859 - L1ME LINE L1 -844 5302 5152 2088 142 6 3 chr15 45183070 45183381 -56197140 - AluSx SINE Alu 0 312 1 778 251 140 17 chr15 45185700 45185818 -56194703 + AluSg1 SINE Alu 2 104 -205 210 37 0 0 chr15 45185818 45185845 -56194676 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 778 251 140 17 chr15 45185845 45185961 -56194560 + AluSg1 SINE Alu 104 265 -44 225 0 0 0 chr15 45185971 45185996 -56194525 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1217 441 10 0 chr15 45186561 45186860 -56193661 - AluJo SINE Alu 0 302 1 1962 153 0 0 chr15 45188156 45188450 -56192071 + AluJb SINE Alu 1 294 -18 180 242 85 105 chr15 45188462 45188615 -56191906 + L2 LINE L2 2306 2455 -859 2528 67 0 0 chr15 45188622 45188920 -56191601 + AluY SINE Alu 1 298 -13 349 202 60 6 chr15 45189319 45189487 -56191034 + (TA)n Simple_repeat Simple_repeat 1 177 0 336 156 104 7 chr15 45189501 45189655 -56190866 + (TATAA)n Simple_repeat Simple_repeat 4 172 0 251 92 81 0 chr15 45189663 45189750 -56190771 + (TTATA)n Simple_repeat Simple_repeat 2 95 0 53 40 0 0 chr15 45189750 45189824 -56190697 + AT_rich Low_complexity Low_complexity 1 74 0 266 290 14 0 chr15 45189835 45189904 -56190617 + L2 LINE L2 2992 3061 -211 199 299 80 43 chr15 45190140 45190327 -56190194 - L2 LINE L2 -742 2572 2379 187 325 33 20 chr15 45190420 45190571 -56189950 + L2 LINE L2 1932 2084 -1230 388 348 111 29 chr15 45190912 45191368 -56189153 + L2 LINE L2 2632 3117 -155 293 333 0 10 chr15 45191474 45191570 -56188951 + MIR SINE MIR 16 110 -98 7057 64 32 0 chr15 45191972 45192958 -56187563 + L1PA13 LINE L1 5149 6161 -2 1182 191 9 14 chr15 45193622 45193842 -56186679 - MER20 DNA MER1_type 0 219 1 538 282 55 17 chr15 45193858 45194039 -56186482 - MER5A DNA MER1_type 0 189 2 192 294 0 0 chr15 45194347 45194398 -56186123 - L2 LINE L2 -23 3249 3199 2152 145 0 0 chr15 45196268 45196608 -56183913 - AluSx SINE Alu 0 340 1 536 207 33 8 chr15 45196612 45196733 -56183788 - MIR SINE MIR -63 145 22 2190 193 28 28 chr15 45197005 45197471 -56183050 + MLT1C LTR MaLR 1 466 -1 284 273 113 27 chr15 45197664 45197814 -56182707 + MIR SINE MIR 20 182 -80 208 295 128 13 chr15 45197939 45198017 -56182504 - MIR3 SINE MIR 0 208 122 540 233 29 122 chr15 45198563 45198808 -56181713 + L2 LINE L2 3092 3313 0 305 271 193 14 chr15 45199199 45199339 -56181182 + MIR3 SINE MIR 41 205 -3 218 287 78 26 chr15 45200014 45200129 -56180392 + L2 LINE L2 2239 2359 -955 1055 204 28 32 chr15 45203407 45203623 -56176898 + MER20 DNA MER1_type 5 219 0 519 45 0 0 chr15 45204800 45204866 -56175655 + (CA)n Simple_repeat Simple_repeat 1 66 0 591 277 12 24 chr15 45205130 45205296 -56175225 - MIR3 SINE MIR -28 180 17 236 301 110 59 chr15 45205966 45206102 -56174419 - MIR SINE MIR -91 171 29 317 266 286 16 chr15 45206481 45206673 -56173848 + MIR SINE MIR 16 259 -3 262 259 17 0 chr15 45206670 45206728 -56173793 - L2 LINE L2 -19 3253 3195 * 45 34 0 0 chr15 45206781 45206840 -56173681 + AT_rich Low_complexity Low_complexity 1 59 0 617 219 126 7 chr15 45206926 45207077 -56173444 + MIR SINE MIR 88 256 -6 356 267 137 0 chr15 45207173 45207319 -56173202 - MIR SINE MIR -29 233 68 443 200 0 56 chr15 45208146 45208271 -56172250 - MIR SINE MIR -90 172 55 1889 182 36 36 chr15 45208489 45208879 -56171642 + MLT1B LTR MaLR 1 390 0 441 283 168 16 chr15 45209498 45209689 -56170832 - MIR SINE MIR -18 244 25 3156 84 2 43 chr15 45209693 45209949 -56170572 + L1PA15 LINE L1 5717 5950 -215 2342 50 0 3 chr15 45209949 45210257 -56170264 + AluY SINE Alu 1 307 0 3156 84 2 43 chr15 45210257 45210462 -56170059 + L1PA15 LINE L1 5950 6162 -3 212 122 0 20 chr15 45210462 45210506 -56170015 + (TTTG)n Simple_repeat Simple_repeat 3 45 0 229 303 45 0 chr15 45211857 45211946 -56168575 - L1MC4 LINE L1 -9 8033 7941 268 236 167 28 chr15 45212034 45212178 -56168343 + L1MC4a LINE L1 5770 5933 -1875 449 141 0 14 chr15 45213729 45213800 -56166721 + LTR37B LTR ERV1 30 99 -369 858 100 62 0 chr15 45213803 45213933 -56166588 - L1PA16 LINE L1 -5 6161 6024 687 83 52 0 chr15 45215589 45215685 -56164836 - L1PA16 LINE L1 -5 6161 6061 3955 172 32 35 chr15 45215825 45217324 -56163197 - L1PB4 LINE L1 -121 6035 4537 521 240 41 0 chr15 45217327 45217448 -56163073 - MLT1E2-int LTR MaLR -1245 126 1 1825 249 137 25 chr15 45217448 45218011 -56162510 - MLT1E2 LTR MaLR 0 626 1 448 278 31 102 chr15 45218299 45218576 -56161945 - MLT1L LTR MaLR -191 424 89 369 0 0 0 chr15 45218966 45219007 -56161514 + (TG)n Simple_repeat Simple_repeat 2 42 0 802 286 9 22 chr15 45219231 45219455 -56161066 + MLT1J LTR MaLR 118 338 -173 400 256 276 10 chr15 45220691 45220894 -56159627 + MIR SINE MIR 6 262 0 379 244 0 0 chr15 45220884 45220966 -56159555 - MIR SINE MIR -105 157 76 * 342 330 90 34 chr15 45221358 45221591 -56158930 + MIR SINE MIR 2 247 -15 22 0 0 0 chr15 45222483 45222505 -56158016 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr15 45223317 45223347 -56157174 + (A)n Simple_repeat Simple_repeat 1 30 0 394 276 83 21 chr15 45224553 45224745 -56155776 + L1ME3A LINE L1 5962 6165 -5 1823 149 17 33 chr15 45225558 45225860 -56154661 - AluJb SINE Alu -2 310 14 26 30 0 0 chr15 45226005 45226038 -56154483 + AT_rich Low_complexity Low_complexity 1 33 0 2672 32 0 10 chr15 45226568 45226881 -56153640 - AluY SINE Alu -1 310 1 27 29 0 0 chr15 45226961 45226995 -56153526 + AT_rich Low_complexity Low_complexity 1 34 0 244 266 0 0 chr15 45228296 45228360 -56152161 - L1M4 LINE L1 -3119 3027 2964 207 0 0 0 chr15 45228360 45228383 -56152138 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1837 181 0 13 chr15 45228384 45228687 -56151834 - 7SLRNA srpRNA srpRNA -21 299 1 2184 108 14 0 chr15 45228792 45229089 -56151432 + AluSx SINE Alu 1 301 -11 23 68 0 0 chr15 45229127 45229171 -56151350 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr15 45229929 45229957 -56150564 + AT_rich Low_complexity Low_complexity 1 28 0 1232 146 5 14 chr15 45233375 45233587 -56146934 - MER2 DNA MER2_type -135 210 1 1039 177 41 70 chr15 45233825 45234068 -56146453 + MER46A DNA MER2_type 1 236 0 32 43 0 0 chr15 45234171 45234217 -56146304 + AT_rich Low_complexity Low_complexity 1 46 0 277 340 141 46 chr15 45234879 45235205 -56145316 - L2 LINE L2 -1 3271 2915 489 332 30 30 chr15 45235286 45235518 -56145003 - L2 LINE L2 -1722 1592 1361 258 250 91 0 chr15 45235518 45235606 -56144915 + L1ME2 LINE L1 6059 6154 -10 337 322 0 11 chr15 45235740 45235830 -56144691 + L2 LINE L2 3223 3311 -2 2058 135 41 36 chr15 45236778 45237140 -56143381 - THE1B LTR MaLR 0 364 1 6545 79 5 0 chr15 45237140 45238017 -56142504 - THE1B-int LTR MaLR 0 1580 700 354 297 79 35 chr15 45238092 45238321 -56142200 - L2 LINE L2 -353 2961 2723 1809 161 138 3 chr15 45238456 45238811 -56141710 - MER57A LTR ERV1 0 403 1 674 118 18 0 chr15 45238884 45238994 -56141527 - LTR54B LTR ERV1 -377 121 10 4491 200 37 29 chr15 45239001 45239796 -56140725 - MER57-int LTR ERV1 -392 7145 6358 1726 165 0 63 chr15 45239796 45240112 -56140409 + AluJb SINE Alu 1 296 -16 4491 200 37 29 chr15 45240112 45240152 -56140369 - MER57-int LTR ERV1 -1179 6358 6320 2085 163 0 34 chr15 45240152 45240501 -56140020 + MER1B DNA MER1_type 1 337 0 4491 200 37 29 chr15 45240501 45240759 -56139762 - MER57-int LTR ERV1 -1217 6320 6042 3389 114 4 20 chr15 45240759 45240981 -56139540 - MER1A DNA MER1_type -2174 528 304 1836 141 85 28 chr15 45240981 45241300 -56139221 + MER1B DNA MER1_type 1 337 0 3389 114 4 20 chr15 45241300 45241586 -56138935 - MER1A DNA MER1_type -2398 304 28 847 251 18 0 chr15 45241598 45241821 -56138700 - MER57-int LTR ERV1 -1486 6051 5825 4456 184 36 14 chr15 45242059 45242353 -56138168 - MER57-int LTR ERV1 -1716 5821 5535 342 0 0 0 chr15 45242353 45242391 -56138130 + (CA)n Simple_repeat Simple_repeat 1 38 0 4456 184 36 14 chr15 45242391 45243150 -56137371 - MER57-int LTR ERV1 -2002 5535 2183 392 287 22 44 chr15 45244307 45244443 -56136078 + MIR SINE MIR 20 152 -56 247 279 44 15 chr15 45244509 45244577 -56135944 + MER5B DNA MER1_type 35 104 -74 1120 251 70 64 chr15 45244593 45244973 -56135548 + L2 LINE L2 2683 3054 -259 1269 98 5 21 chr15 45244973 45245167 -56135354 + L1PB3 LINE L1 5957 6147 -7 1120 251 70 64 chr15 45245167 45245417 -56135104 + L2 LINE L2 3054 3301 -12 1607 159 10 57 chr15 45246126 45246440 -56134081 - AluJo SINE Alu -13 299 1 869 125 0 0 chr15 45246598 45246718 -56133803 + AluSq/x SINE Alu 1 120 -192 24 0 0 0 chr15 45246718 45246742 -56133779 + AT_rich Low_complexity Low_complexity 1 24 0 278 272 19 160 chr15 45248184 45248397 -56132124 - MIR SINE MIR -32 230 48 2848 155 51 26 chr15 45248615 45249184 -56131337 - LTR1 LTR ERV1 0 785 203 318 206 0 0 chr15 45249178 45249246 -56131275 - LTR1 LTR ERV1 -533 252 185 * 735 180 17 11 chr15 45249420 45249598 -56130923 - LTR1 LTR ERV1 -606 179 1 257 333 10 0 chr15 45250120 45250216 -56130305 + CT-rich Low_complexity Low_complexity 6 102 0 1247 258 56 117 chr15 45250823 45251775 -56128746 - L2 LINE L2 -161 3152 2257 1692 188 0 13 chr15 45251987 45252290 -56128231 + AluJb SINE Alu 4 302 -10 556 234 16 0 chr15 45253315 45253443 -56127078 + MIR SINE MIR 133 262 0 1100 89 0 0 chr15 45253675 45253810 -56126711 - AluJb SINE Alu -21 291 157 1543 169 0 0 chr15 45253831 45254110 -56126411 - L1MB5 LINE L1 -30 6144 5866 279 250 0 0 chr15 45254348 45254404 -56126117 - MIR3 SINE MIR -35 173 118 222 382 11 0 chr15 45254506 45254595 -56125926 - L2 LINE L2 -83 3189 3100 29952 116 13 16 chr15 45254600 45259524 -56120997 + L1P LINE L1 11 4919 -1227 390 82 82 0 chr15 45259537 45259610 -56120911 + L1PA7 LINE L1 4148 4226 -1920 6844 65 3 2 chr15 45259621 45259737 -56120784 + L1PA7 LINE L1 4928 5042 -1112 2444 74 3 13 chr15 45259737 45260047 -56120474 + AluY SINE Alu 1 307 -4 6844 65 3 2 chr15 45260047 45261140 -56119381 + L1PA7 LINE L1 5042 6145 -9 218 151 19 75 chr15 45261147 45261253 -56119268 + (TATAA)n Simple_repeat Simple_repeat 3 102 0 1629 189 30 27 chr15 45261343 45261708 -56118813 + MER47A DNA MER2_type 1 366 0 576 210 204 0 chr15 45262864 45263021 -56117500 + MER5A DNA MER1_type 1 189 0 1372 146 142 13 chr15 45263140 45263379 -56117142 - AluSg1 SINE Alu -17 292 23 442 320 0 0 chr15 45263607 45263735 -56116786 + L2 LINE L2 3186 3313 0 371 131 30 50 chr15 45264078 45264177 -56116344 + L1MC5 LINE L1 7756 7852 -109 497 308 55 37 chr15 45264399 45264724 -56115797 + L2 LINE L2 1560 1890 -1424 256 293 54 61 chr15 45264762 45264909 -56115612 + L2 LINE L2 2246 2391 -923 263 133 0 50 chr15 45264965 45265025 -56115496 - L1MA10 LINE L1 -3 6331 6275 * 1696 184 18 26 chr15 45265021 45265071 -56115450 - L1ME1 LINE L1 -197 5969 5920 582 306 28 45 chr15 45265071 45265469 -56115052 - L1MA4A LINE L1 -376 5927 5537 510 282 133 29 chr15 45265667 45265983 -56114538 + MER115 DNA AcHobo 58 406 -287 1239 163 0 26 chr15 45266189 45266422 -56114099 - AluJo SINE Alu -14 298 72 303 93 0 0 chr15 45266453 45266496 -56114025 + (TCCC)n Simple_repeat Simple_repeat 3 45 0 195 304 24 65 chr15 45266496 45266520 -56114001 + L2 LINE L2 2458 2481 -833 1370 45 0 11 chr15 45266520 45266699 -56113822 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 195 304 24 65 chr15 45266699 45266842 -56113679 + L2 LINE L2 2481 2618 -696 247 278 351 0 chr15 45266864 45267015 -56113506 + MIR SINE MIR 23 226 -36 4770 130 51 17 chr15 45267096 45267979 -56112542 + Tigger3b DNA MER2_type 319 1231 0 232 348 45 80 chr15 45268518 45268831 -56111690 - L2 LINE L2 -411 2903 2602 375 202 0 24 chr15 45269054 45269138 -56111383 - MIR SINE MIR -1 261 180 764 241 47 30 chr15 45269138 45269374 -56111147 - MLT1G1 LTR MaLR 0 595 356 294 395 57 6 chr15 45269400 45269557 -56110964 + L2 LINE L2 3107 3271 -1 475 326 170 35 chr15 45269593 45269970 -56110551 - L3 LINE CR1 -75 1502 1075 284 281 132 53 chr15 45271389 45271503 -56109018 - L2 LINE L2 0 3272 3150 441 158 0 0 chr15 45271748 45271824 -56108697 + HY1 scRNA scRNA 33 108 -4 185 389 0 0 chr15 45272039 45272093 -56108428 - MIR SINE MIR -68 140 87 209 197 45 0 chr15 45272984 45273050 -56107471 + (TA)n Simple_repeat Simple_repeat 2 70 0 2133 127 7 0 chr15 45273785 45274085 -56106436 - AluSx SINE Alu -5 307 6 2028 107 0 82 chr15 45274641 45274969 -56105552 - AluSx SINE Alu -11 301 1 1693 141 0 44 chr15 45276151 45276449 -56104072 + AluJb SINE Alu 11 295 -17 2254 95 7 3 chr15 45276710 45277005 -56103516 + AluSq SINE Alu 1 296 -17 2069 142 0 0 chr15 45277062 45277365 -56103156 - AluSx SINE Alu -9 303 1 204 339 31 0 chr15 45277474 45277539 -56102982 - L2 LINE L2 -1 3312 3246 432 277 99 28 chr15 45277649 45277862 -56102659 - L3 LINE CR1 -154 1423 1196 257 264 0 0 chr15 45278004 45278057 -56102464 + MIR3 SINE MIR 131 183 -25 374 268 94 5 chr15 45279058 45279177 -56101344 + MIR SINE MIR 20 144 -64 2076 102 67 0 chr15 45280005 45280290 -56100231 - AluSx SINE Alu -8 304 1 710 129 0 16 chr15 45280586 45280710 -56099811 - L1MB8 LINE L1 -6 6172 6051 420 296 70 0 chr15 45281511 45281683 -56098838 + L1ME4a LINE L1 5743 5926 -195 1325 191 53 39 chr15 45281850 45282132 -56098389 + AluJo SINE Alu 1 286 -26 2293 198 41 41 chr15 45282132 45282168 -56098353 - L1MB8 LINE L1 -43 6135 6100 2117 130 0 13 chr15 45282168 45282469 -56098052 - AluSx SINE Alu -15 297 1 2293 198 41 41 chr15 45282469 45283017 -56097504 - L1MB8 LINE L1 -77 6101 5551 363 338 28 0 chr15 45283439 45283581 -56096940 - L2 LINE L2 -4 3309 3164 1572 260 68 9 chr15 45283686 45284377 -56096144 - L2 LINE L2 -4 3309 2579 1543 205 30 67 chr15 45284534 45284939 -56095582 - MLT1B LTR MaLR 0 390 1 184 316 143 10 chr15 45284983 45285081 -56095440 - L2 LINE L2 -626 2688 2578 669 272 71 36 chr15 45285928 45286152 -56094369 + MIR SINE MIR 7 238 -24 2223 97 23 0 chr15 45286798 45287098 -56093423 - AluSp SINE Alu -6 307 1 2488 77 3 0 chr15 45287375 45287685 -56092836 + AluSp SINE Alu 3 313 0 1830 172 0 41 chr15 45288828 45289147 -56091374 + AluJb SINE Alu 3 308 -4 2248 101 6 28 chr15 45289601 45289919 -56090602 + AluSp SINE Alu 1 311 -2 2438 206 34 16 chr15 45290158 45290662 -56089859 - MER82 DNA MER2_type -9 644 132 1843 178 57 44 chr15 45290715 45291169 -56089352 - MLT1C LTR MaLR -2 465 6 1315 288 32 19 chr15 45291212 45291849 -56088672 + L1ME1 LINE L1 946 1630 -4680 445 289 90 38 chr15 45291901 45292275 -56088246 + L1ME1 LINE L1 3048 3491 -2638 486 115 74 7 chr15 45292525 45292673 -56087848 + (TA)n Simple_repeat Simple_repeat 1 158 0 432 299 81 4 chr15 45292715 45292976 -56087545 + L1ME1 LINE L1 3574 3854 -2275 1902 98 0 0 chr15 45293225 45293471 -56087050 + AluY SINE Alu 39 284 -27 530 281 151 41 chr15 45293725 45294878 -56085643 + L1ME1 LINE L1 4549 5835 -314 15202 161 50 47 chr15 45294912 45299087 -56081434 + L1MA4A LINE L1 2 4164 -2841 413 187 0 0 chr15 45299087 45299162 -56081359 - AluJ/FRAM SINE Alu -7 305 231 15202 161 50 47 chr15 45299162 45299333 -56081188 + L1MA4A LINE L1 4164 4333 -2672 2210 126 7 0 chr15 45299333 45299642 -56080879 - AluSx SINE Alu -1 311 1 15202 161 50 47 chr15 45299642 45300414 -56080107 + L1MA4A LINE L1 4333 5101 -1904 279 0 0 0 chr15 45300414 45300445 -56080076 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 15202 161 50 47 chr15 45300445 45302239 -56078282 + L1MA4A LINE L1 5101 6998 -7 2263 83 7 0 chr15 45302261 45302549 -56077972 + AluSx SINE Alu 1 290 -22 199 284 226 0 chr15 45302703 45302805 -56077716 - MIR3 SINE MIR -78 130 6 2241 106 7 0 chr15 45302853 45303146 -56077375 + AluSx SINE Alu 5 299 -13 547 113 0 0 chr15 45303326 45303406 -56077115 + MADE1 DNA Mariner 1 80 0 562 156 0 10 chr15 45303580 45303676 -56076845 + FRAM SINE Alu 62 156 -20 425 28 56 0 chr15 45303694 45303765 -56076756 + (TA)n Simple_repeat Simple_repeat 2 76 0 225 209 0 0 chr15 45304228 45304295 -56076226 + (TA)n Simple_repeat Simple_repeat 2 68 0 1411 143 5 0 chr15 45304299 45304522 -56075999 + AluSq SINE Alu 87 310 -3 414 263 172 5 chr15 45304596 45304782 -56075739 + L2 LINE L2 1857 2073 -1241 521 277 211 28 chr15 45304793 45305186 -56075335 + L2 LINE L2 2386 2850 -464 221 246 116 0 chr15 45305220 45305289 -56075232 + L2 LINE L2 2938 3014 -299 300 301 83 23 chr15 45305332 45305465 -56075056 + L2 LINE L2 3172 3312 -1 1640 155 32 7 chr15 45305633 45305910 -56074611 - AluJb SINE Alu -28 284 1 2270 96 10 6 chr15 45308261 45308573 -56071948 + AluSq SINE Alu 1 313 0 21 0 0 0 chr15 45308975 45308996 -56071525 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr15 45310496 45310524 -56069997 + AT_rich Low_complexity Low_complexity 1 28 0 1012 254 134 40 chr15 45310749 45311225 -56069296 - MARNA DNA Mariner -21 565 45 924 170 7 0 chr15 45312817 45312964 -56067557 + FAM SINE Alu 26 173 -12 26 30 0 0 chr15 45312992 45313025 -56067496 + AT_rich Low_complexity Low_complexity 1 33 0 198 0 0 0 chr15 45316215 45316237 -56064284 + (A)n Simple_repeat Simple_repeat 1 22 0 2475 63 0 0 chr15 45316632 45316931 -56063590 - AluY SINE Alu -12 299 1 488 169 180 0 chr15 45318393 45318481 -56062040 - MER44D DNA MER2_type -1 604 501 578 203 93 8 chr15 45318481 45318599 -56061922 - MER6 DNA MER2_type -1 864 16 322 163 0 0 chr15 45318598 45318647 -56061874 + MER6 DNA MER2_type 816 864 -1 * 1108 121 103 56 chr15 45318647 45318874 -56061647 - MER44D DNA MER2_type -101 508 1 378 352 76 25 chr15 45318959 45319195 -56061326 - L2 LINE L2 0 3272 3025 799 214 29 0 chr15 45320006 45320179 -56060342 - MER3 DNA MER1_type -78 131 1 1865 141 7 14 chr15 45320350 45320647 -56059874 + AluJb SINE Alu 1 295 -17 21 57 0 0 chr15 45320648 45320683 -56059838 + AT_rich Low_complexity Low_complexity 1 35 0 725 99 0 0 chr15 45321406 45321507 -56059014 - HY3 scRNA scRNA 0 101 1 193 253 195 0 chr15 45321579 45321666 -56058855 - L2 LINE L2 -2 3311 3208 185 250 0 78 chr15 45322705 45322769 -56057752 - L2 LINE L2 -3 3269 3211 2257 82 7 30 chr15 45323634 45323938 -56056583 - AluSp SINE Alu -16 297 1 1902 123 20 27 chr15 45324863 45325163 -56055358 + AluJb SINE Alu 1 298 -14 1765 255 111 10 chr15 45326452 45327256 -56053265 - L2 LINE L2 -5 3308 2427 2047 112 32 0 chr15 45327348 45327633 -56052888 + AluY SINE Alu 1 294 -17 314 313 155 27 chr15 45330252 45330718 -56049803 + L2 LINE L2 2508 3047 -225 207 0 0 0 chr15 45331369 45331392 -56049129 + (A)n Simple_repeat Simple_repeat 1 23 0 180 401 99 40 chr15 45331878 45331938 -56048583 - L2 LINE L2 -90 3182 3127 207 0 0 0 chr15 45331938 45331961 -56048560 + (TATAA)n Simple_repeat Simple_repeat 3 25 0 180 401 99 40 chr15 45331961 45332204 -56048317 - L2 LINE L2 -145 3127 2861 210 338 58 26 chr15 45332816 45332970 -56047551 + L2 LINE L2 2837 2995 -277 244 309 175 0 chr15 45333138 45333235 -56047286 + L2 LINE L2 3154 3267 -5 1503 84 194 4 chr15 45333657 45333939 -56046582 + AluSg SINE Alu 2 328 0 1821 154 26 0 chr15 45334248 45334560 -56045961 + L1PA14 LINE L1 5841 6160 -1 2201 111 7 0 chr15 45334761 45335059 -56045462 + AluSq SINE Alu 1 300 -13 21 0 0 0 chr15 45335448 45335469 -56045052 + AT_rich Low_complexity Low_complexity 1 21 0 2122 123 0 3 chr15 45336182 45336475 -56044046 + AluSx SINE Alu 1 292 -20 720 198 0 0 chr15 45336787 45336908 -56043613 + FLAM_A SINE Alu 1 121 -12 4875 109 88 20 chr15 45336929 45337817 -56042704 + L1MA4A LINE L1 5353 6300 -3 22 0 0 0 chr15 45339091 45339113 -56041408 + GC_rich Low_complexity Low_complexity 1 22 0 310 270 112 51 chr15 45341442 45341620 -56038901 + MIR SINE MIR 23 211 -51 1459 188 59 15 chr15 45342482 45342754 -56037767 - AluJo SINE Alu -26 286 3 269 258 70 62 chr15 45342782 45342910 -56037611 - L1ME LINE L1 -303 5818 5690 2054 93 18 18 chr15 45342941 45343249 -56037272 + AluSx SINE Alu 6 313 0 277 175 62 25 chr15 45343403 45343483 -56037038 - L1MC5 LINE L1 -34 7927 7845 * 369 296 38 0 chr15 45343473 45343605 -56036916 - L1MC4 LINE L1 -113 7929 7793 2077 141 0 3 chr15 45343634 45343933 -56036588 + AluSx SINE Alu 1 298 -14 221 283 19 0 chr15 45344064 45344117 -56036404 - MER5A DNA MER1_type -78 111 58 364 244 74 82 chr15 45344145 45344225 -56036296 - MER94 DNA DNA 0 134 54 2247 66 7 43 chr15 45344225 45344529 -56035992 + AluSc SINE Alu 1 293 -16 364 244 74 82 chr15 45344529 45344583 -56035938 - MER94 DNA DNA -80 54 1 186 299 60 15 chr15 45344947 45345014 -56035507 + L2 LINE L2 3202 3271 -1 2260 116 0 0 chr15 45345351 45345661 -56034860 - AluSx SINE Alu -2 310 1 2006 217 21 21 chr15 45345661 45346140 -56034381 - L1ME1 LINE L1 -45 6121 5643 1143 209 178 77 chr15 45346142 45346623 -56033898 + MLT1E LTR MaLR 1 643 -11 1941 194 19 13 chr15 45346637 45347267 -56033254 - L1ME1 LINE L1 -520 5646 4855 199 313 73 0 chr15 45347376 45347472 -56033049 + L2 LINE L2 3200 3302 -11 22 35 0 0 chr15 45347568 45347597 -56032924 + AT_rich Low_complexity Low_complexity 1 29 0 396 232 45 9 chr15 45347647 45347759 -56032762 - LTR33 LTR ERVL 0 521 406 472 211 0 0 chr15 45347859 45347949 -56032572 + MER34 LTR ERV1 1 90 -452 2322 106 3 0 chr15 45348141 45348453 -56032068 + AluSq SINE Alu 1 313 0 516 209 65 22 chr15 45348638 45348777 -56031744 + L2 LINE L2 3169 3313 0 204 219 27 55 chr15 45348800 45348873 -56031648 - L2 LINE L2 -104 3209 3139 333 182 250 0 chr15 45348941 45349029 -56031492 - MIR SINE MIR -77 185 76 296 286 171 0 chr15 45349055 45349160 -56031361 - L2 LINE L2 0 3272 3150 542 164 179 0 chr15 45349201 45349402 -56031119 + Charlie5 DNA MER1_type 2330 2566 -46 457 192 10 67 chr15 45349404 45349439 -56031082 - MER5A DNA MER1_type -83 106 71 2366 61 37 0 chr15 45349439 45349733 -56030788 - AluY SINE Alu -6 305 1 457 192 10 67 chr15 45349733 45349801 -56030720 - MER5A DNA MER1_type -118 71 9 2197 92 30 0 chr15 45350079 45350374 -56030147 + AluSq SINE Alu 1 304 -9 244 265 103 0 chr15 45350614 45350682 -56029839 - L2 LINE L2 -213 3059 2985 2243 96 3 7 chr15 45350998 45351301 -56029220 - AluSq SINE Alu -11 302 1 306 247 68 0 chr15 45351685 45351758 -56028763 + MIR SINE MIR 31 108 -100 2184 108 3 3 chr15 45352079 45352376 -56028145 + AluSq SINE Alu 1 297 -16 368 313 0 46 chr15 45352974 45353105 -56027416 + MIR3 SINE MIR 13 137 -71 183 42 0 0 chr15 45353540 45353564 -56026957 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 182 114 0 29 chr15 45354675 45354710 -56025811 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 2360 93 3 0 chr15 45354713 45355024 -56025497 - AluSp SINE Alu -1 312 1 2079 114 0 3 chr15 45355420 45355710 -56024811 - AluSx SINE Alu -18 294 6 1091 250 120 24 chr15 45355978 45356394 -56024127 - Charlie7 DNA MER1_type -2101 511 56 1933 182 35 56 chr15 45356527 45357038 -56023483 - L1MB8 LINE L1 0 6178 5675 1852 120 51 4 chr15 45357397 45357673 -56022848 - AluSx SINE Alu -19 293 5 399 264 54 87 chr15 45357682 45357959 -56022562 - L1MC/D LINE L1 -1985 5823 5556 2065 141 0 0 chr15 45357981 45358286 -56022235 - AluSg SINE Alu -5 305 1 3374 163 63 9 chr15 45358520 45359157 -56021364 - LTR51 LTR ERV1 0 671 1 282 258 45 22 chr15 45359160 45359249 -56021272 - L1MC/D LINE L1 -2082 4064 3974 1837 183 116 21 chr15 45359310 45359731 -56020790 + LTR2B LTR ERV1 30 490 0 2016 145 40 38 chr15 45359731 45360130 -56020391 + LTR23 LTR ERV1 37 436 -1 35 0 0 0 chr15 45360141 45360176 -56020345 + AT_rich Low_complexity Low_complexity 1 35 0 544 320 24 27 chr15 45360207 45360541 -56019980 - L1MC/D LINE L1 -2232 3914 3582 26 30 0 0 chr15 45360683 45360716 -56019805 + AT_rich Low_complexity Low_complexity 1 33 0 28 61 0 0 chr15 45360924 45360973 -56019548 + AT_rich Low_complexity Low_complexity 1 49 0 337 283 8 33 chr15 45361496 45361516 -56019005 + L1MC4 LINE L1 6593 6612 -1430 2235 100 3 41 chr15 45361516 45361835 -56018686 + AluSx SINE Alu 1 307 -5 337 283 8 33 chr15 45361835 45361934 -56018587 + L1MC4 LINE L1 6612 6709 -1333 448 181 0 19 chr15 45361934 45362039 -56018482 + (TA)n Simple_repeat Simple_repeat 2 104 0 23 54 0 0 chr15 45362686 45362723 -56017798 + AT_rich Low_complexity Low_complexity 1 37 0 325 241 12 12 chr15 45362882 45362965 -56017556 - MIR SINE MIR -69 193 111 250 228 108 18 chr15 45363059 45363186 -56017335 - MIR3 SINE MIR -74 134 9 243 125 0 0 chr15 45363277 45363317 -56017204 + (T)n Simple_repeat Simple_repeat 1 40 0 240 361 143 13 chr15 45363966 45364343 -56016178 + L2 LINE L2 2434 2859 -455 420 102 45 23 chr15 45364669 45364757 -56015764 + CT-rich Low_complexity Low_complexity 2 91 0 1711 160 38 17 chr15 45364765 45365052 -56015469 - AluJb SINE Alu -19 293 1 1348 80 0 43 chr15 45365149 45365337 -56015184 - AluSg/x SINE Alu -10 302 123 584 181 16 0 chr15 45365349 45365476 -56015045 - L1MC4 LINE L1 0 8042 7914 6779 129 15 4 chr15 45365495 45366744 -56013777 - L1MA3 LINE L1 0 7724 6462 4807 156 37 19 chr15 45366740 45367209 -56013312 - L1MA3 LINE L1 -2920 4645 4186 * 2446 80 3 0 chr15 45367209 45367511 -56013010 + AluSp SINE Alu 1 303 -10 4807 156 37 19 chr15 45367511 45368623 -56011898 - L1MA3 LINE L1 -3379 4186 3032 4109 152 31 16 chr15 45368634 45369373 -56011148 - L1PA16 LINE L1 -11 6155 5406 * 12273 180 40 23 chr15 45369361 45370182 -56010339 - L1MA3 LINE L1 -4518 3047 2241 2471 80 3 0 chr15 45370182 45370482 -56010039 - AluSc SINE Alu -6 303 3 12273 180 40 23 chr15 45370482 45372377 -56008144 - L1MA3 LINE L1 -5324 2241 9 232 188 0 0 chr15 45372372 45372420 -56008101 - L1MC4 LINE L1 -137 7905 7858 * 1623 173 132 29 chr15 45372424 45372870 -56007651 - LTR54B LTR ERV1 -6 492 1 855 192 29 0 chr15 45372870 45373042 -56007479 - L1MC4 LINE L1 -181 7861 7685 3176 160 2 22 chr15 45373055 45373594 -56006927 - MER44D DNA MER2_type -21 584 2 412 212 212 7 chr15 45373605 45373742 -56006779 - L1MC4 LINE L1 -366 7676 7512 920 218 26 79 chr15 45373792 45374173 -56006348 + LTR37A LTR ERV1 18 378 -48 2619 145 33 46 chr15 45374187 45374220 -56006301 - LTR54 LTR ERV1 0 510 478 2859 133 9 0 chr15 45374220 45374650 -56005871 + MER57B LTR ERV1 1 434 0 2619 145 33 46 chr15 45374650 45375133 -56005388 - LTR54 LTR ERV1 -32 478 1 2917 208 75 19 chr15 45375150 45375926 -56004595 - L1MC4 LINE L1 -514 7528 6710 1437 211 83 82 chr15 45375924 45376120 -56004401 - L1MC4 LINE L1 -1917 5891 5697 * 357 24 0 0 chr15 45376120 45376162 -56004359 + (TA)n Simple_repeat Simple_repeat 1 42 0 1437 211 83 82 chr15 45376162 45376459 -56004062 - L1MC4 LINE L1 -2111 5697 5402 746 173 8 0 chr15 45376459 45376586 -56003935 - FLAM_C SINE Alu -5 128 1 1437 211 83 82 chr15 45376586 45376634 -56003887 - L1MC4 LINE L1 -2406 5402 5356 2333 103 7 0 chr15 45376634 45376934 -56003587 - AluSx SINE Alu -10 302 1 1437 211 83 82 chr15 45376934 45377026 -56003495 - L1MC4 LINE L1 -2452 5356 5255 384 285 26 16 chr15 45377152 45377345 -56003176 - L1MC4 LINE L1 -1038 5108 4914 2021 119 3 7 chr15 45377352 45377646 -56002875 - AluSc SINE Alu 0 309 17 627 120 10 0 chr15 45377682 45377782 -56002739 + AluSg SINE Alu 1 101 -209 1732 174 4 0 chr15 45377920 45378195 -56002326 - AluSp SINE Alu -37 276 1 445 294 56 16 chr15 45378219 45378353 -56002168 - L1MC4 LINE L1 -1499 4647 4520 2169 104 0 28 chr15 45378353 45378671 -56001850 - AluSg SINE Alu -1 309 1 445 294 56 16 chr15 45378671 45378913 -56001608 - L1MC4 LINE L1 -1626 4520 4256 1044 190 99 18 chr15 45378942 45379226 -56001295 - LTR52 LTR ERVL -107 314 8 268 305 115 24 chr15 45379406 45379911 -56000610 - L1MC4 LINE L1 -2951 3195 2645 1280 170 28 45 chr15 45380147 45380394 -56000127 + AluJo SINE Alu 40 282 -30 1711 151 91 0 chr15 45380700 45381031 -55999490 - MER46B DNA MER2_type 0 236 1 581 128 0 0 chr15 45381472 45381566 -55998955 - AluSp/q SINE Alu -9 304 211 274 331 59 7 chr15 45381647 45381783 -55998738 - MIR SINE MIR 0 262 120 416 133 0 13 chr15 45382112 45382187 -55998334 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 1622 211 13 0 chr15 45382192 45382504 -55998017 - 7SLRNA srpRNA srpRNA -4 316 1 418 311 81 12 chr15 45383490 45383651 -55996870 - MIR3 SINE MIR -15 193 22 1484 205 120 28 chr15 45383662 45384086 -55996435 + MLT1C LTR MaLR 1 463 -4 405 58 0 0 chr15 45384363 45384415 -55996106 + (TG)n Simple_repeat Simple_repeat 2 53 0 21 0 0 0 chr15 45384612 45384633 -55995888 + AT_rich Low_complexity Low_complexity 1 21 0 736 207 0 0 chr15 45385175 45385315 -55995206 - MSTD LTR MaLR -8 388 249 2328 97 0 3 chr15 45385315 45385614 -55994907 - AluSp SINE Alu -15 298 1 4625 147 23 50 chr15 45385616 45386342 -55994179 - L1MA5 LINE L1 -262 6038 5294 198 0 0 0 chr15 45386342 45386364 -55994157 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 2243 100 0 0 chr15 45386366 45386655 -55993866 - AluSx SINE Alu -18 294 6 4625 147 23 50 chr15 45386655 45387142 -55993379 - L1MA5 LINE L1 -1007 5293 4870 1962 126 48 10 chr15 45387142 45387435 -55993086 + AluSx SINE Alu 1 304 -8 4625 147 23 50 chr15 45387435 45387975 -55992546 - L1MA5 LINE L1 -1430 4870 4317 21 0 0 0 chr15 45387994 45388015 -55992506 + AT_rich Low_complexity Low_complexity 1 21 0 13709 181 3 24 chr15 45388021 45389559 -55990962 - L1PB1 LINE L1 -8 6143 4574 483 15 44 0 chr15 45389559 45389627 -55990894 - L1PA3 LINE L1 0 6155 6085 13709 181 3 24 chr15 45389627 45391087 -55989434 - L1PB1 LINE L1 -1577 4574 3252 2213 99 20 0 chr15 45391087 45391381 -55989140 - AluSq SINE Alu -13 300 1 13709 181 3 24 chr15 45391381 45392468 -55988053 - L1PB1 LINE L1 -2899 3252 2144 5301 183 55 6 chr15 45392467 45393713 -55986808 - L1MA5 LINE L1 -1813 4333 3028 * 1998 140 0 7 chr15 45393726 45394051 -55986470 - AluSq SINE Alu 0 323 1 1367 142 0 14 chr15 45394053 45394265 -55986256 - AluSg/x SINE Alu -11 301 93 408 20 0 0 chr15 45394268 45394317 -55986204 + (CA)n Simple_repeat Simple_repeat 1 49 0 2926 160 17 2 chr15 45394321 45394847 -55985674 - MSTA-int LTR MaLR -1117 534 1 2245 149 88 8 chr15 45394847 45395243 -55985278 - MSTA LTR MaLR 0 428 1 8142 200 58 55 chr15 45395243 45395393 -55985128 - L1 LINE L1 -2730 4835 4687 2079 124 0 22 chr15 45395393 45395708 -55984813 - AluSg SINE Alu -2 308 1 8142 200 58 55 chr15 45395708 45396651 -55983870 - L1 LINE L1 -2878 4687 3749 1332 108 0 25 chr15 45396651 45396855 -55983666 - L1PA8 LINE L1 -1 6171 5973 8142 200 58 55 chr15 45396855 45397148 -55983373 - L1 LINE L1 -3816 3749 3458 1621 145 10 17 chr15 45397148 45397437 -55983084 + AluY SINE Alu 1 287 -24 8142 200 58 55 chr15 45397437 45397742 -55982779 - L1 LINE L1 -4107 3458 3155 2198 91 3 33 chr15 45397742 45398049 -55982472 - AluY SINE Alu -13 298 1 8142 200 58 55 chr15 45398049 45400482 -55980039 - L1 LINE L1 -4410 3155 11 265 362 64 11 chr15 45400894 45400988 -55979533 - L2 LINE L2 -4 3268 3170 341 366 43 24 chr15 45401061 45401225 -55979296 + L2 LINE L2 3074 3240 -32 261 314 0 0 chr15 45401368 45401454 -55979067 - L1M4 LINE L1 -2280 3866 3781 296 273 139 51 chr15 45401836 45402052 -55978469 - LTR16C LTR ERVL -1 490 256 670 236 152 28 chr15 45402060 45402241 -55978280 - L1ME LINE L1 -365 5801 5644 1835 179 0 3 chr15 45402241 45402538 -55977983 - AluSx SINE Alu -16 296 1 670 236 152 28 chr15 45402538 45402549 -55977972 - L1ME LINE L1 -522 5644 5636 2468 122 5 19 chr15 45402549 45402918 -55977603 + THE1B LTR MaLR 1 364 0 670 236 152 28 chr15 45402918 45402938 -55977583 - L1ME LINE L1 -530 5636 5620 2002 143 0 7 chr15 45402938 45403231 -55977290 + AluSx SINE Alu 1 291 -21 670 236 152 28 chr15 45403231 45403453 -55977068 - L1ME LINE L1 -546 5620 5313 8972 181 27 9 chr15 45403568 45404680 -55975841 - L1MA4A LINE L1 -308 6697 5606 2313 107 0 13 chr15 45404680 45404997 -55975524 + AluSq SINE Alu 1 313 0 8972 181 27 9 chr15 45404997 45406664 -55973857 - L1MA4A LINE L1 -1399 5606 3868 4941 148 49 15 chr15 45406676 45408093 -55972428 - L1PA16 LINE L1 -9 6157 4692 801 294 4 7 chr15 45408126 45408395 -55972126 - L1PA12 LINE L1 -5132 2449 2182 1884 151 39 39 chr15 45408585 45408922 -55971599 + MER1B DNA MER1_type 1 337 0 287 323 0 0 chr15 45408979 45409075 -55971446 - L1PA12 LINE L1 -5400 2181 2086 1122 338 29 39 chr15 45409207 45409822 -55970699 - L1PA12 LINE L1 -6177 1397 789 10832 191 86 44 chr15 45409851 45411960 -55968561 - L1MA4A LINE L1 -2966 3882 1864 480 35 0 0 chr15 45411960 45412018 -55968503 + (TA)n Simple_repeat Simple_repeat 2 59 0 2140 138 0 3 chr15 45412018 45412323 -55968198 - AluSx SINE Alu -8 304 1 10832 191 86 44 chr15 45412323 45413913 -55966608 - L1MA4A LINE L1 -4983 1865 28 1843 152 139 16 chr15 45414398 45414779 -55965742 - MSTA LTR MaLR 0 428 1 8286 191 30 5 chr15 45414779 45416389 -55964132 - MSTA-int LTR MaLR 0 1651 1 2201 123 129 11 chr15 45416391 45416772 -55963749 - MSTA LTR MaLR -2 426 1 454 236 73 9 chr15 45417631 45417741 -55962780 - L1MC4 LINE L1 -607 7435 7319 2306 119 3 6 chr15 45417742 45418094 -55962427 - THE1B LTR MaLR -13 351 1 2265 105 0 0 chr15 45418099 45418393 -55962128 - AluSg SINE Alu -16 294 1 852 203 42 97 chr15 45418394 45418766 -55961755 - L1MC4 LINE L1 -715 7327 6954 239 242 265 23 chr15 45419612 45419744 -55960777 + MIR SINE MIR 28 191 -71 2375 87 0 0 chr15 45420793 45421103 -55959418 - AluSg SINE Alu 0 310 1 21 71 0 0 chr15 45421152 45421194 -55959327 + AT_rich Low_complexity Low_complexity 1 42 0 318 249 114 0 chr15 45421919 45422027 -55958494 + MIR SINE MIR 35 141 -67 1289 332 159 19 chr15 45423681 45425069 -55955452 - L2 LINE L2 -1 3271 1685 269 250 15 0 chr15 45425447 45425515 -55955006 - MIR3 SINE MIR -7 201 133 365 236 91 0 chr15 45425515 45425625 -55954896 - LTR33 LTR ERVL 0 521 402 1003 282 151 19 chr15 45428615 45429126 -55951395 - L2 LINE L2 -19 3294 2708 188 67 33 0 chr15 45429197 45429227 -55951294 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 265 262 121 54 chr15 45431090 45431239 -55949282 + MIR SINE MIR 41 199 -63 4843 42 5 3 chr15 45431383 45431973 -55948548 + LTR10C LTR ERV1 1 591 0 360 400 56 0 chr15 45432180 45432395 -55948126 - MIR SINE MIR -34 228 2 189 296 88 32 chr15 45432619 45432744 -55947777 - L2 LINE L2 -20 3293 3162 1021 212 69 69 chr15 45432770 45433162 -55947359 + L1M4 LINE L1 3587 3978 -2168 266 268 5 132 chr15 45433157 45433262 -55947259 + L1ME3 LINE L1 5962 6030 -132 * 1110 162 29 0 chr15 45433262 45433472 -55947049 - L1MB1 LINE L1 -1 6167 5952 266 268 5 132 chr15 45433472 45433571 -55946950 + L1ME3 LINE L1 6030 6140 -22 24 32 0 0 chr15 45433717 45433748 -55946773 + AT_rich Low_complexity Low_complexity 1 31 0 2171 110 3 3 chr15 45433748 45434040 -55946481 + AluSx SINE Alu 1 292 -20 186 43 0 0 chr15 45434044 45434067 -55946454 + (CA)n Simple_repeat Simple_repeat 2 24 0 246 300 0 33 chr15 45434074 45434194 -55946327 - L1MB1 LINE L1 -1920 5888 5773 590 299 57 4 chr15 45434279 45434629 -55945892 - L1ME4a LINE L1 -295 5826 5450 431 92 0 0 chr15 45435210 45435275 -55945246 - MER41B LTR ERV1 -90 545 481 207 0 0 0 chr15 45435605 45435628 -55944893 + (CAT)n Simple_repeat Simple_repeat 1 23 0 33 25 0 0 chr15 45436269 45436309 -55944212 + AT_rich Low_complexity Low_complexity 1 40 0 919 199 135 13 chr15 45436643 45436955 -55943566 - L1MC4 LINE L1 0 8042 7693 200 233 0 0 chr15 45436959 45437002 -55943519 + T-rich Low_complexity Low_complexity 1 43 0 688 246 36 25 chr15 45437110 45437387 -55943134 - L1MC4 LINE L1 -373 7669 7390 473 267 85 48 chr15 45438028 45438380 -55942141 + HAL1 LINE L1 1296 1660 -847 462 248 0 0 chr15 45438382 45438499 -55942022 + HAL1 LINE L1 1697 1813 -694 378 263 34 62 chr15 45438633 45438812 -55941709 + HAL1 LINE L1 1920 2093 -414 636 274 177 26 chr15 45439047 45439386 -55941135 - L2 LINE L2 -1 3312 2923 257 246 0 15 chr15 45439424 45439489 -55941032 - MIR SINE MIR -77 185 122 192 342 0 81 chr15 45439535 45439646 -55940875 - L2 LINE L2 -188 3084 2983 324 0 0 0 chr15 45439724 45439760 -55940761 + (TG)n Simple_repeat Simple_repeat 1 36 0 234 0 0 0 chr15 45439759 45439785 -55940736 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 1306 36 21 10 chr15 45439785 45439977 -55940544 - L1P1 LINE L1 -708 5447 5254 189 250 21 0 chr15 45440889 45440937 -55939584 - L2 LINE L2 0 3272 3224 264 290 145 8 chr15 45442276 45442379 -55938142 - MIR SINE MIR -63 145 32 37367 67 6 49 chr15 45442802 45444536 -55935985 - L1PA3 LINE L1 0 6155 4347 3185 34 0 3 chr15 45444536 45444920 -55935601 - L1PA3 LINE L1 -3 6152 5770 393 55 0 0 chr15 45444924 45444979 -55935542 - L1PA3 LINE L1 0 6155 6101 37367 67 6 49 chr15 45444979 45449680 -55930841 - L1PA3 LINE L1 -1811 4344 1 952 267 81 26 chr15 45449893 45450371 -55930150 - MLT1H LTR MaLR 0 549 12 2314 137 146 2 chr15 45451009 45451433 -55929088 - MER31A LTR ERV1 0 485 1 504 240 178 45 chr15 45452042 45452329 -55928192 - L2 LINE L2 -1 3312 2988 24 0 0 0 chr15 45453532 45453556 -55926965 + AT_rich Low_complexity Low_complexity 1 24 0 525 321 126 16 chr15 45453704 45454022 -55926499 - L3 LINE CR1 -123 1454 1102 819 225 115 5 chr15 45455471 45455680 -55924841 + MIR SINE MIR 3 234 -28 277 281 168 87 chr15 45456070 45456255 -55924266 + MIR SINE MIR 28 227 -35 184 239 30 45 chr15 45456358 45456425 -55924096 + MER5A DNA MER1_type 10 75 -114 * 520 223 182 7 chr15 45456369 45456517 -55924004 - MER5A DNA MER1_type -7 182 9 355 224 238 14 chr15 45457826 45457969 -55922552 - LTR33 LTR ERVL -5 516 342 247 302 23 0 chr15 45457998 45458084 -55922437 - LTR33 LTR ERVL -343 178 91 6206 120 73 12 chr15 45458084 45459193 -55921328 - Tigger3b DNA MER2_type 0 1231 55 313 238 36 0 chr15 45459221 45459305 -55921216 - LTR33 LTR ERVL -427 94 8 28 0 0 0 chr15 45460761 45460789 -55919732 + AT_rich Low_complexity Low_complexity 1 28 0 198 91 0 0 chr15 45460862 45460895 -55919626 + (T)n Simple_repeat Simple_repeat 1 33 0 985 135 60 22 chr15 45460916 45461101 -55919420 - AluY SINE Alu -1 310 119 2790 16 0 0 chr15 45461114 45461425 -55919096 - AluYa5 SINE Alu 0 311 1 476 219 18 9 chr15 45461477 45461591 -55918930 + AluY SINE Alu 3 117 -194 234 276 0 16 chr15 45461785 45461912 -55918609 + (TTA)n Simple_repeat Simple_repeat 1 125 0 1988 99 7 3 chr15 45462028 45462312 -55918209 + AluY SINE Alu 19 303 -8 2480 53 3 0 chr15 45462476 45462780 -55917741 + AluY SINE Alu 1 305 -6 611 282 137 34 chr15 45463136 45463280 -55917241 + MIR SINE MIR 3 131 -131 2026 127 21 26 chr15 45463280 45463657 -55916864 - THE1C LTR MaLR 0 375 1 611 282 137 34 chr15 45463657 45463746 -55916775 + MIR SINE MIR 131 260 -2 309 272 189 20 chr15 45463956 45464173 -55916348 + MIR SINE MIR 14 262 0 226 309 39 83 chr15 45464843 45465067 -55915454 - L2 LINE L2 -278 2994 2783 2285 109 0 0 chr15 45465327 45465630 -55914891 - AluSc SINE Alu -6 303 1 418 326 88 6 chr15 45466235 45466416 -55914105 - MER117 DNA MER1_type -1 196 1 695 291 60 87 chr15 45467453 45467964 -55912557 + L2 LINE L2 2774 3272 0 21 0 0 0 chr15 45468938 45468959 -55911562 + AT_rich Low_complexity Low_complexity 1 21 0 1026 314 151 65 chr15 45469180 45470363 -55910158 + L2 LINE L2 1198 2481 -833 594 334 114 60 chr15 45470367 45470904 -55909617 + L2 LINE L2 2670 3272 0 390 317 45 60 chr15 45472028 45472293 -55908228 + L2 LINE L2 3028 3288 -25 649 277 95 40 chr15 45472564 45472889 -55907632 + LTR16C LTR ERVL 149 491 0 252 316 79 0 chr15 45473913 45473989 -55906532 + MIR3 SINE MIR 9 90 -118 1374 162 0 0 chr15 45473989 45474205 -55906316 - AluSg/x SINE Alu -1 311 96 207 69 0 0 chr15 45475119 45475148 -55905373 + (TG)n Simple_repeat Simple_repeat 2 30 0 199 349 63 0 chr15 45475762 45475825 -55904696 - L2 LINE L2 -60 3212 3146 921 201 98 5 chr15 45476465 45476659 -55903862 + MER58A DNA MER1_type 10 221 -3 1723 166 41 3 chr15 45476862 45477152 -55903369 + AluSx SINE Alu 1 381 0 423 75 0 62 chr15 45477152 45477232 -55903289 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 232 411 26 22 chr15 45477261 45477487 -55903034 - L2 LINE L2 -237 3035 2809 307 323 102 56 chr15 45477630 45478023 -55902498 - L2 LINE L2 0 3272 2862 299 211 0 13 chr15 45478186 45478262 -55902259 + GA-rich Low_complexity Low_complexity 2 76 0 192 40 0 0 chr15 45478355 45478380 -55902141 + (TC)n Simple_repeat Simple_repeat 2 26 0 182 293 52 0 chr15 45478569 45478627 -55901894 + L2 LINE L2 2698 2758 -556 2550 180 10 2 chr15 45479166 45479649 -55900872 - L1PA15 LINE L1 -2 6163 5677 708 219 12 18 chr15 45479649 45479808 -55900713 - AluSq SINE Alu -14 299 140 2023 143 0 3 chr15 45480089 45480389 -55900132 - AluSg SINE Alu -11 299 1 13510 208 25 4 chr15 45480390 45483200 -55897321 - L1PA15 LINE L1 -478 5687 2938 725 0 0 12 chr15 45483200 45483286 -55897235 + (TTTC)n Simple_repeat Simple_repeat 1 85 0 13510 208 25 4 chr15 45483286 45484019 -55896502 - L1PA15 LINE L1 -3227 2938 2055 2646 91 13 11 chr15 45484019 45484393 -55896128 + THE1C LTR MaLR 1 375 0 13510 208 25 4 chr15 45484393 45484622 -55895899 - L1PA15 LINE L1 -4110 2055 1832 469 250 102 49 chr15 45485468 45485657 -55894864 - MIR SINE MIR -56 206 6 202 188 0 0 chr15 45487325 45487357 -55893164 + polypurine Low_complexity Low_complexity 4 35 0 729 295 66 16 chr15 45487798 45488164 -55892357 - MLT1I LTR MaLR -21 388 5 283 297 123 0 chr15 45489834 45489972 -55890549 - L2 LINE L2 0 3313 3159 250 354 126 37 chr15 45490404 45490650 -55889871 - L2 LINE L2 -22 3250 2983 475 287 133 10 chr15 45492138 45492333 -55888188 + L3 LINE CR1 1014 1232 -345 404 243 0 10 chr15 45492753 45492856 -55887665 + LTR67 LTR ERVL 456 557 0 6095 135 6 19 chr15 45492929 45493108 -55887413 - L1MA5 LINE L1 0 6300 6120 2118 94 52 0 chr15 45493108 45493396 -55887125 - AluSp SINE Alu -10 303 1 6095 135 6 19 chr15 45493396 45494650 -55885871 - L1MA5 LINE L1 -180 6120 4885 307 311 95 33 chr15 45495311 45495617 -55884904 + LTR16C LTR ERVL 167 491 0 1112 232 40 88 chr15 45495750 45496172 -55884349 + MLT2B3 LTR ERVL 153 554 0 419 263 167 0 chr15 45496238 45496352 -55884169 + L3 LINE CR1 1238 1370 -207 547 309 12 0 chr15 45496572 45496737 -55883784 - Charlie8 DNA MER1_type -2152 265 99 207 342 105 26 chr15 45497099 45497213 -55883308 + L2 LINE L2 3170 3292 -21 1121 290 74 20 chr15 45498063 45498470 -55882051 - L2 LINE L2 -2 3311 2883 24 53 0 0 chr15 45499407 45499445 -55881076 + AT_rich Low_complexity Low_complexity 1 38 0 482 215 70 59 chr15 45499600 45499786 -55880735 + L1MC5 LINE L1 7503 7690 -271 1969 63 0 0 chr15 45499864 45500118 -55880403 + L1PA5 LINE L1 5901 6154 0 622 280 98 0 chr15 45500282 45500518 -55880003 - LTR33 LTR ERVL -260 261 3 332 246 131 31 chr15 45500590 45500720 -55879801 - MIR3 SINE MIR -3 205 63 6458 51 9 2 chr15 45500741 45501559 -55878962 + L1PA7 LINE L1 5332 6154 0 516 248 128 0 chr15 45501777 45502059 -55878462 - L1ME4a LINE L1 -31 6090 5773 201 122 20 61 chr15 45502121 45502170 -55878351 + (TA)n Simple_repeat Simple_repeat 2 48 0 25 0 0 0 chr15 45502188 45502213 -55878308 + AT_rich Low_complexity Low_complexity 1 25 0 276 315 39 16 chr15 45502249 45502376 -55878145 + MIR3 SINE MIR 11 140 -68 2209 131 0 10 chr15 45502432 45502744 -55877777 - AluSx SINE Alu -3 309 1 695 287 126 0 chr15 45504510 45504893 -55875628 - L2 LINE L2 -93 3220 2772 261 200 18 0 chr15 45504971 45505026 -55875495 - L2 LINE L2 -827 2487 2432 219 188 0 42 chr15 45505088 45505136 -55875385 - MIR3 SINE MIR -2 206 161 2417 80 0 10 chr15 45506167 45506480 -55874041 + AluY SINE Alu 2 311 0 22 0 0 0 chr15 45507349 45507371 -55873150 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr15 45508249 45508281 -55872240 + AT_rich Low_complexity Low_complexity 1 32 0 2273 89 31 0 chr15 45509746 45510039 -55870482 - AluSg SINE Alu -7 303 2 21 0 0 0 chr15 45510275 45510296 -55870225 + AT_rich Low_complexity Low_complexity 1 21 0 258 105 0 0 chr15 45512094 45512132 -55868389 + (ATG)n Simple_repeat Simple_repeat 1 38 0 22 56 0 0 chr15 45513195 45513231 -55867290 + AT_rich Low_complexity Low_complexity 1 36 0 473 239 95 112 chr15 45513807 45514295 -55866226 + Charlie8 DNA MER1_type 1 470 -1947 987 156 0 40 chr15 45514295 45514468 -55866053 + FRAM SINE Alu 1 163 -13 609 224 70 0 chr15 45515401 45515557 -55864964 - MIR SINE MIR -3 259 93 288 0 0 0 chr15 45515578 45515610 -55864911 + (CA)n Simple_repeat Simple_repeat 1 32 0 438 156 52 0 chr15 45516647 45516743 -55863778 - L1MB7 LINE L1 -13 6171 6071 587 291 79 23 chr15 45516868 45517222 -55863299 - MARNA DNA Mariner -126 460 87 21 0 0 0 chr15 45518436 45518457 -55862064 + AT_rich Low_complexity Low_complexity 1 21 0 840 174 0 7 chr15 45519338 45519476 -55861045 - AluJo SINE Alu -6 306 170 725 131 0 57 chr15 45519477 45519599 -55860922 - AluJo SINE Alu -197 115 1 32 67 0 0 chr15 45520111 45520171 -55860350 + AT_rich Low_complexity Low_complexity 1 60 0 4812 125 46 2 chr15 45520199 45521005 -55859516 - L1PA16 LINE L1 -9 6472 5632 4355 55 37 0 chr15 45521017 45521582 -55858939 - L1PA7 LINE L1 0 6154 5569 11254 111 19 52 chr15 45521586 45524072 -55856449 - L1PA16 LINE L1 -3961 2500 5 3801 211 15 2 chr15 45524077 45524964 -55855557 - L1P LINE L1 -815 6034 5137 1079 172 24 0 chr15 45524974 45525143 -55855378 - AluSx SINE Alu -139 173 1 6080 175 31 16 chr15 45525144 45526945 -55853576 - L1PA15-16 LINE L1 -3101 3748 1915 21 0 0 0 chr15 45527854 45527875 -55852646 + AT_rich Low_complexity Low_complexity 1 21 0 326 361 0 0 chr15 45529277 45529385 -55851136 - MIR3 SINE MIR -6 202 95 3511 139 53 2 chr15 45529514 45530103 -55850418 + LTR31 LTR ERV1 1 619 0 2342 108 0 0 chr15 45531228 45531534 -55848987 + AluSq SINE Alu 1 306 -7 21 57 0 0 chr15 45532782 45532817 -55847704 + AT_rich Low_complexity Low_complexity 1 35 0 192 97 0 0 chr15 45533337 45533368 -55847153 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 826 206 106 0 chr15 45533646 45533835 -55846686 + MER3 DNA MER1_type 1 209 0 1130 278 28 7 chr15 45535082 45535368 -55845153 - LTR16A LTR ERVL -5 445 154 1271 253 130 40 chr15 45535368 45535914 -55844607 - MLT1G1 LTR MaLR 0 595 1 1784 209 70 5 chr15 45536090 45536487 -55844034 + MER110 LTR ERV1 57 479 -12 42338 34 23 2 chr15 45537726 45543745 -55836776 + L1PA2 LINE L1 2 6155 0 22 0 0 0 chr15 45543980 45544002 -55836519 + AT_rich Low_complexity Low_complexity 1 22 0 802 108 48 0 chr15 45544508 45544694 -55835827 + L1MA7 LINE L1 5986 6286 -5 21 36 0 0 chr15 45544694 45544722 -55835799 + AT_rich Low_complexity Low_complexity 1 28 0 10034 192 12 5 chr15 45544735 45545619 -55834902 - L1PA15 LINE L1 -4 6161 5284 1870 147 155 13 chr15 45545619 45545994 -55834527 + MSTA LTR MaLR 1 428 0 10034 192 12 5 chr15 45545994 45547978 -55832543 - L1PA15 LINE L1 -881 5284 3275 32 43 0 0 chr15 45550469 45550515 -55830006 + AT_rich Low_complexity Low_complexity 1 46 0 745 245 116 37 chr15 45551309 45551706 -55828815 + L1M4c LINE L1 1133 1625 -4759 2267 67 44 0 chr15 45552451 45552749 -55827772 - AluY SINE Alu 0 311 1 726 340 52 17 chr15 45553134 45553425 -55827096 - L3 LINE CR1 -124 1453 1153 1220 187 78 34 chr15 45553425 45553693 -55826828 + MLT1A2 LTR MaLR 95 374 0 269 389 191 7 chr15 45553696 45553999 -55826522 - L3 LINE CR1 -941 636 278 26 0 0 0 chr15 45554114 45554140 -55826381 + AT_rich Low_complexity Low_complexity 1 26 0 345 139 0 109 chr15 45555113 45555315 -55825206 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 265 260 6 29 chr15 45555273 45555446 -55825075 + (AAATG)n Simple_repeat Simple_repeat 2 170 0 * 357 141 0 96 chr15 45555479 45555678 -55824843 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 245 315 69 15 chr15 45555681 45555811 -55824710 - MIR SINE MIR -60 202 66 1836 120 43 4 chr15 45557956 45558232 -55822289 - AluSx SINE Alu -25 287 1 3069 207 40 8 chr15 45559523 45560281 -55820240 - L1M4 LINE L1 -996 5150 4369 9716 152 46 11 chr15 45560289 45563047 -55817474 - L1MA1 LINE L1 -171 7550 4688 4625 166 23 1 chr15 45563045 45563836 -55816685 - L1MA1 LINE L1 -5707 1858 1051 * 28 29 0 0 chr15 45563846 45563881 -55816640 + AT_rich Low_complexity Low_complexity 1 35 0 329 295 79 39 chr15 45564197 45564239 -55816282 + MLT1J LTR MaLR 207 246 -265 2182 176 19 35 chr15 45564239 45564672 -55815849 - MSTB LTR MaLR 0 426 1 329 295 79 39 chr15 45564672 45564872 -55815649 + MLT1J LTR MaLR 246 371 -140 263 308 0 19 chr15 45565013 45565117 -55815404 + L1 LINE L1 4089 4190 -1956 23 0 0 0 chr15 45565448 45565471 -55815050 + AT_rich Low_complexity Low_complexity 1 23 0 774 153 53 7 chr15 45566616 45566766 -55813755 + Tigger1 DNA MER2_type 1 157 -2261 * 1306 154 9 0 chr15 45566755 45566969 -55813552 + Tigger1 DNA MER2_type 2202 2417 -1 203 256 198 35 chr15 45567736 45567822 -55812699 - L2 LINE L2 0 3272 3173 750 308 61 4 chr15 45568632 45568879 -55811642 + MIR SINE MIR 2 262 0 14643 188 29 8 chr15 45568887 45573028 -55807493 + L1PB3 LINE L1 2635 6861 -9 832 302 37 39 chr15 45573379 45573789 -55806732 + MLT1I LTR MaLR 1 409 0 301 309 71 16 chr15 45574340 45574466 -55806055 + MIR SINE MIR 19 151 -57 3793 160 82 28 chr15 45574656 45575399 -55805122 + LTR39 LTR ERV1 1 783 0 21 0 0 0 chr15 45575714 45575735 -55804786 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr15 45576852 45576875 -55803646 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr15 45577275 45577296 -55803225 + AT_rich Low_complexity Low_complexity 1 21 0 260 255 291 14 chr15 45577351 45577492 -55803029 - MER5A DNA MER1_type -1 188 9 211 296 57 0 chr15 45577559 45577647 -55802874 + MIR SINE MIR 127 219 -43 * 1681 270 107 2 chr15 45577640 45578180 -55802341 - L2 LINE L2 -1764 1550 954 226 231 39 67 chr15 45578183 45578287 -55802234 - L1M4 LINE L1 -3390 2756 2656 265 257 62 28 chr15 45578527 45578671 -55801850 - L1M4 LINE L1 -3783 2363 2215 42379 35 21 1 chr15 45579372 45585403 -55795118 + L1PA2 LINE L1 1 6155 0 269 327 64 26 chr15 45585436 45585592 -55794929 + L1MCc LINE L1 1180 1341 -5082 17440 186 28 13 chr15 45585655 45589618 -55790903 - L1PA13 LINE L1 -1466 5331 1254 180 0 0 0 chr15 45589618 45589638 -55790883 + (CAG)n Simple_repeat Simple_repeat 1 20 0 17440 186 28 13 chr15 45589638 45590912 -55789609 - L1PA13 LINE L1 -5543 1254 1 181 0 33 33 chr15 45591027 45591057 -55789464 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 1558 194 71 7 chr15 45591084 45591464 -55789057 - L1ME1 LINE L1 -3 6163 5769 787 308 94 19 chr15 45591487 45592006 -55788515 - HAL1 LINE L1 -808 1699 1142 182 321 25 49 chr15 45592251 45592332 -55788189 + L2 LINE L2 3194 3272 0 399 308 56 7 chr15 45592713 45592856 -55787665 + MIR SINE MIR 11 160 -102 252 137 0 0 chr15 45592892 45592943 -55787578 + (TA)n Simple_repeat Simple_repeat 2 52 0 267 197 45 30 chr15 45592955 45593021 -55787500 + MIR SINE MIR 196 262 0 362 271 122 0 chr15 45593157 45593264 -55787257 + MIR SINE MIR 122 241 -21 248 309 86 0 chr15 45593603 45593684 -55786837 - MIR SINE MIR -143 119 32 330 67 0 0 chr15 45594348 45594393 -55786128 + (TG)n Simple_repeat Simple_repeat 1 45 0 903 324 160 21 chr15 45596356 45596501 -55784020 + L2 LINE L2 2361 2484 -829 2117 109 19 53 chr15 45596501 45596876 -55783645 + THE1B LTR MaLR 1 362 -2 903 324 160 21 chr15 45596876 45597488 -55783033 + L2 LINE L2 2484 3235 -78 212 196 0 22 chr15 45597679 45597725 -55782796 + GA-rich Low_complexity Low_complexity 2 46 0 306 393 47 9 chr15 45597912 45598126 -55782395 - L2 LINE L2 -540 2774 2553 346 316 71 37 chr15 45599371 45599535 -55780986 + L2 LINE L2 2762 2928 -344 457 325 40 7 chr15 45599548 45599699 -55780822 + L2 LINE L2 3158 3313 0 3192 186 28 0 chr15 45599837 45600146 -55780375 + L1PA15 LINE L1 4082 4381 -1765 345 62 0 0 chr15 45600146 45600194 -55780327 + (CA)n Simple_repeat Simple_repeat 1 48 0 3192 186 28 0 chr15 45600194 45600496 -55780025 + L1PA15 LINE L1 4381 4710 -1436 1389 205 23 4 chr15 45600496 45600755 -55779766 + AluJo SINE Alu 1 264 -48 5179 127 58 0 chr15 45600773 45602182 -55778339 + L1PA15 LINE L1 4703 6165 0 28 0 0 0 chr15 45602229 45602257 -55778264 + AT_rich Low_complexity Low_complexity 1 28 0 261 352 93 6 chr15 45602957 45603119 -55777402 + L2 LINE L2 2709 2884 -430 37 0 0 0 chr15 45603145 45603182 -55777339 + AT_rich Low_complexity Low_complexity 1 37 0 1307 275 93 24 chr15 45603327 45603866 -55776655 + L1MC4 LINE L1 5387 5962 -1846 2287 87 0 3 chr15 45604094 45604392 -55776129 - AluY SINE Alu -14 297 1 306 0 0 0 chr15 45605507 45605541 -55774980 + (GA)n Simple_repeat Simple_repeat 2 35 0 192 234 0 0 chr15 45605541 45605588 -55774933 + (TG)n Simple_repeat Simple_repeat 2 48 0 424 355 18 0 chr15 45605944 45606110 -55774411 - MIR3 SINE MIR -9 199 31 195 139 0 0 chr15 45606635 45606671 -55773850 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 71 0 0 chr15 45608377 45608419 -55772102 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr15 45608915 45608950 -55771571 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr15 45609194 45609221 -55771300 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr15 45609350 45609371 -55771150 + AT_rich Low_complexity Low_complexity 1 21 0 354 295 45 0 chr15 45609534 45609646 -55770875 + MIR3 SINE MIR 87 203 -5 189 147 0 0 chr15 45610700 45610734 -55769787 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 317 276 10 31 chr15 45612992 45613090 -55767431 + L1MC4 LINE L1 6614 6709 -1333 * 328 211 58 67 chr15 45613020 45613124 -55767397 - L1MC4 LINE L1 -1326 6716 6614 413 61 0 15 chr15 45613124 45613190 -55767331 + (GA)n Simple_repeat Simple_repeat 2 66 0 412 270 26 9 chr15 45613190 45613305 -55767216 + MER5B DNA MER1_type 59 175 -3 589 216 43 7 chr15 45613562 45613701 -55766820 + L2 LINE L2 2651 2794 -520 436 231 54 8 chr15 45615816 45615946 -55764575 + MER103 DNA DNA 22 157 -9 23 0 0 0 chr15 45616000 45616023 -55764498 + AT_rich Low_complexity Low_complexity 1 23 0 214 308 64 39 chr15 45617792 45617870 -55762651 - L2 LINE L2 -52 3220 3141 35 24 0 0 chr15 45618291 45618333 -55762188 + AT_rich Low_complexity Low_complexity 1 42 0 793 260 24 37 chr15 45620012 45620258 -55760263 - MIR SINE MIR -19 243 1 281 308 9 47 chr15 45621309 45621416 -55759105 + L2 LINE L2 3208 3310 -3 3828 188 92 4 chr15 45621459 45622300 -55758221 - MER63C DNA MER1_type -2 928 14 572 266 0 0 chr15 45622312 45622436 -55758085 + MER94 DNA DNA 10 133 -1 1778 124 11 0 chr15 45623518 45623791 -55756730 - L1PA16 LINE L1 -6 6160 5885 740 115 25 0 chr15 45623953 45624075 -55756446 + L1MA5A LINE L1 6173 6297 0 234 325 96 0 chr15 45625755 45625838 -55754683 - MIR SINE MIR -85 123 33 344 227 7 73 chr15 45626642 45626792 -55753729 + T-rich Low_complexity Low_complexity 3 142 0 322 321 36 18 chr15 45627184 45627352 -55753169 - L3b LINE CR1 -89 1494 1324 663 211 50 96 chr15 45629269 45629487 -55751034 - MER63A DNA MER1_type -2 208 1 728 116 21 2 chr15 45631397 45631631 -55748890 + AluSx SINE Alu 3 289 -20 265 298 228 44 chr15 45632859 45633016 -55747505 + L2 LINE L2 2578 2705 -609 2117 122 10 0 chr15 45633016 45633311 -55747210 + AluSx SINE Alu 1 298 -14 265 298 228 44 chr15 45633311 45633381 -55747140 + L2 LINE L2 2705 2847 -467 22 0 0 0 chr15 45634086 45634108 -55746413 + AT_rich Low_complexity Low_complexity 1 22 0 1974 119 10 29 chr15 45634871 45635181 -55745340 - AluSx SINE Alu -8 304 1 198 351 46 46 chr15 45635908 45636059 -55744462 - MER5A DNA MER1_type -37 152 2 356 311 33 25 chr15 45635909 45636031 -55744490 + MER5B DNA MER1_type 40 162 -16 233 350 136 27 chr15 45636181 45636438 -55744083 - L2 LINE L2 -453 2861 2577 370 91 0 104 chr15 45636540 45636617 -55743904 - AluS SINE Alu -234 69 1 940 200 17 0 chr15 45637003 45637178 -55743343 - AluSg/x SINE Alu -1 309 132 2147 123 0 3 chr15 45637178 45637486 -55743035 - AluSx SINE Alu -5 307 1 585 76 13 0 chr15 45637900 45637979 -55742542 - MADE1 DNA Mariner 0 80 1 23 54 0 0 chr15 45638898 45638935 -55741586 + AT_rich Low_complexity Low_complexity 1 37 0 907 262 27 0 chr15 45639327 45639548 -55740973 + MIR SINE MIR 36 262 0 541 220 55 0 chr15 45640116 45640225 -55740296 + MIR3 SINE MIR 82 196 -12 181 308 75 47 chr15 45642812 45642919 -55737602 + L2 LINE L2 3197 3306 -7 289 323 203 23 chr15 45643256 45643389 -55737132 - MIR3 SINE MIR -6 202 46 1263 237 164 68 chr15 45645120 45645609 -55734912 - MLT1F LTR MaLR 0 542 7 3670 150 24 3 chr15 45645845 45646430 -55734091 + MSTA-int LTR MaLR 1055 1651 0 1317 122 15 5 chr15 45646430 45646627 -55733894 + MSTA LTR MaLR 1 199 -227 7517 29 1 0 chr15 45646627 45648112 -55732409 + L1PA4 LINE L1 4670 6155 0 381 237 62 0 chr15 45648144 45648241 -55732280 + MER5A DNA MER1_type 9 111 -78 1516 143 4 12 chr15 45648286 45648531 -55731990 + MSTA LTR MaLR 185 427 -1 1805 260 20 24 chr15 45648539 45649089 -55731432 + L1ME1 LINE L1 5610 6157 -9 1283 275 94 8 chr15 45649096 45649893 -55730628 + L1ME LINE L1 1850 2676 -3539 668 285 40 10 chr15 45649897 45650097 -55730424 - MER58C DNA MER1_type -4 211 6 1426 205 80 45 chr15 45650104 45650528 -55729993 + L1ME LINE L1 2673 3111 -3104 313 211 95 21 chr15 45650521 45650616 -55729905 + L1MC4 LINE L1 7914 8015 -27 * 340 233 147 69 chr15 45651083 45651199 -55729322 - MER5B DNA MER1_type -1 177 53 4611 193 13 8 chr15 45651985 45652933 -55727588 - L1PA13 LINE L1 -3146 3651 2700 880 148 0 0 chr15 45652936 45653071 -55727450 - L1PA13 LINE L1 -6190 597 463 1432 199 0 0 chr15 45653079 45653355 -55727166 - L1PA15-16 LINE L1 -4040 2809 2534 1916 168 37 0 chr15 45653360 45653657 -55726864 + AluSx SINE Alu 3 310 -2 400 180 5 0 chr15 45653657 45653743 -55726778 + L1P LINE L1 2392 2480 -3666 2333 242 85 7 chr15 45653824 45654598 -55725923 + L1ME LINE L1 4517 5351 -864 481 184 0 0 chr15 45654598 45654674 -55725847 + FRAM SINE Alu 77 152 -24 446 161 11 0 chr15 45654698 45654785 -55725736 + L1ME LINE L1 5332 5419 -816 * 911 172 25 6 chr15 45654782 45654939 -55725582 + MST-int LTR MaLR 1179 1338 -313 772 209 120 4 chr15 45654934 45655159 -55725362 + L1ME LINE L1 5423 5673 -562 * 2615 153 7 5 chr15 45655161 45655586 -55724935 + MSTB LTR MaLR 1 426 0 4923 178 7 3 chr15 45655586 45656452 -55724069 + MSTB-int LTR MaLR 1 869 -782 232 279 23 23 chr15 45657348 45657434 -55723087 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 289 155 35 0 chr15 45657525 45657583 -55722938 + (TATG)n Simple_repeat Simple_repeat 3 62 0 345 24 0 0 chr15 45657917 45657959 -55722562 + (CA)n Simple_repeat Simple_repeat 2 43 0 499 245 28 63 chr15 45658182 45658325 -55722196 + L2 LINE L2 346 483 -2831 356 233 80 73 chr15 45658320 45658470 -55722051 + L2 LINE L2 3146 3296 -17 * 2056 139 3 0 chr15 45659410 45659711 -55720810 + AluSx SINE Alu 1 302 -10 252 0 0 0 chr15 45660600 45660628 -55719893 + (CA)n Simple_repeat Simple_repeat 1 28 0 264 289 62 31 chr15 45660763 45660860 -55719661 - MIR3 SINE MIR -26 182 83 445 312 5 70 chr15 45661865 45662064 -55718457 + MIR SINE MIR 13 198 -64 368 159 0 0 chr15 45662326 45662389 -55718132 + L1PA15-16 LINE L1 2877 2939 -3910 228 375 0 10 chr15 45662668 45662764 -55717757 + MIR SINE MIR 57 151 -111 24 53 0 0 chr15 45662827 45662865 -55717656 + AT_rich Low_complexity Low_complexity 1 38 0 2661 170 49 42 chr15 45663041 45663594 -55716927 - MER74A LTR ERVL 0 558 2 187 328 17 0 chr15 45663728 45663786 -55716735 + MIR SINE MIR 198 256 -6 2468 251 70 66 chr15 45664294 45665372 -55715149 - HAL1 LINE L1 -186 2321 1240 292 233 25 74 chr15 45665468 45665631 -55714890 - L1MCa LINE L1 -3098 3328 3174 3256 124 36 4 chr15 45665660 45666183 -55714338 - L1PA11 LINE L1 -1 6173 5634 472 120 0 0 chr15 45666259 45666334 -55714187 - L1PA7 LINE L1 -2 6152 6078 351 300 80 60 chr15 45666393 45666643 -55713878 - L1MCa LINE L1 -3335 3091 2837 204 67 0 0 chr15 45666777 45666807 -55713714 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 7715 116 14 2 chr15 45666807 45668778 -55711743 - L1PA8 LINE L1 -18 6154 4178 1581 247 16 7 chr15 45668779 45669232 -55711289 - L1M4 LINE L1 -803 5343 4887 950 254 63 14 chr15 45669237 45669584 -55710937 - L1MCa LINE L1 -5096 1330 967 452 269 0 0 chr15 45669690 45669835 -55710686 + L1P LINE L1 2257 2401 -3745 1894 132 4 0 chr15 45669835 45670165 -55710356 + AluSg SINE Alu 1 331 0 674 229 71 75 chr15 45670987 45671240 -55709281 - MLT1J LTR MaLR -255 256 5 245 303 66 26 chr15 45672095 45672171 -55708350 + L2 LINE L2 3188 3266 -6 511 252 175 0 chr15 45672879 45673022 -55707499 + L3 LINE CR1 1150 1317 -260 1560 147 51 15 chr15 45673262 45673535 -55706986 + MER1B DNA MER1_type 1 283 -56 38 51 0 0 chr15 45674195 45674254 -55706267 + AT_rich Low_complexity Low_complexity 1 59 0 1375 148 0 0 chr15 45674342 45674552 -55705969 + AluSx SINE Alu 4 213 -99 214 178 0 0 chr15 45674834 45674879 -55705642 + T-rich Low_complexity Low_complexity 1 45 0 4347 176 38 14 chr15 45675349 45675411 -55705110 - L1MC2 LINE L1 -6 6338 6279 2400 67 0 3 chr15 45675411 45675709 -55704812 + AluY SINE Alu 1 297 -14 4347 176 38 14 chr15 45675709 45676551 -55703970 - L1MC2 LINE L1 -65 6279 5413 1935 118 33 0 chr15 45676560 45676866 -55703655 - L1PA16 LINE L1 -9 6157 5842 762 130 72 0 chr15 45676866 45677043 -55703478 - L1MC2 LINE L1 -743 5403 5224 2307 118 0 0 chr15 45678234 45678547 -55701974 - AluSq SINE Alu 0 313 1 25 0 0 0 chr15 45679459 45679484 -55701037 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr15 45680471 45680499 -55700022 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr15 45680530 45680553 -55699968 + AT_rich Low_complexity Low_complexity 1 23 0 193 281 88 0 chr15 45683436 45683493 -55697028 - L2 LINE L2 -16 3297 3236 342 326 10 0 chr15 45684379 45684477 -55696044 + MIR SINE MIR 40 138 -70 244 155 17 17 chr15 45684591 45684649 -55695872 + GA-rich Low_complexity Low_complexity 1 58 0 1638 204 29 125 chr15 45684651 45685245 -55695276 - MLT1F1 LTR MaLR -3 564 3 369 331 38 45 chr15 45685772 45685929 -55694592 - MIR3 SINE MIR -48 160 5 347 291 267 12 chr15 45686338 45686510 -55694011 - MIR SINE MIR 0 262 47 1850 135 3 36 chr15 45688368 45688672 -55691849 - AluSx SINE Alu -18 294 1 281 341 96 58 chr15 45688960 45689168 -55691353 + MIR SINE MIR 46 261 -1 709 172 47 0 chr15 45689595 45689723 -55690798 - AluJb SINE Alu -178 134 1 720 222 12 12 chr15 45689723 45689898 -55690623 - MER33 DNA MER1_type -249 75 1 433 347 94 18 chr15 45689964 45690295 -55690226 + L2 LINE L2 2181 2536 -778 191 200 0 0 chr15 45690724 45690759 -55689762 - MIR SINE MIR 0 262 228 2234 107 0 3 chr15 45690919 45691228 -55689293 - AluSg SINE Alu -2 308 1 339 269 10 19 chr15 45691351 45691455 -55689066 + MER5A DNA MER1_type 10 112 -77 240 298 24 24 chr15 45691532 45691616 -55688905 - L2 LINE L2 -35 3278 3195 342 294 190 27 chr15 45693205 45693389 -55687132 - MIR SINE MIR -42 220 7 21 82 0 0 chr15 45694063 45694112 -55686409 + AT_rich Low_complexity Low_complexity 1 49 0 1672 139 0 4 chr15 45694552 45694803 -55685718 - AluSg SINE Alu -60 250 1 7337 162 24 29 chr15 45694900 45696345 -55684176 - L1P5 LINE L1 -363 5788 3 261 203 0 43 chr15 45696348 45696417 -55684104 - L1 LINE L1 -1659 4487 4422 24 0 0 0 chr15 45696437 45696461 -55684060 + AT_rich Low_complexity Low_complexity 1 24 0 5992 167 16 13 chr15 45696465 45698686 -55681835 - L1PB1 LINE L1 0 6151 3926 * 6736 172 57 6 chr15 45698685 45699501 -55681020 + L1PBa LINE L1 1814 2587 -4275 282 56 0 0 chr15 45699501 45699537 -55680984 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6736 172 57 6 chr15 45699537 45701212 -55679309 + L1PBa LINE L1 2587 4429 -2433 * 8426 227 39 18 chr15 45701205 45703392 -55677129 - L1 LINE L1 -1707 4439 2201 2075 134 0 3 chr15 45703392 45703691 -55676830 + AluSx SINE Alu 1 298 -14 8426 227 39 18 chr15 45703691 45703779 -55676742 - L1 LINE L1 -3945 2201 2116 1994 114 0 4 chr15 45703781 45704053 -55676468 + AluSg SINE Alu 1 271 -39 809 291 116 27 chr15 45704153 45704638 -55675883 - L1MCc LINE L1 -5068 1355 828 23 33 0 0 chr15 45704797 45704827 -55675694 + AT_rich Low_complexity Low_complexity 1 30 0 437 286 121 22 chr15 45704971 45705244 -55675277 - L1MCc LINE L1 -6100 323 24 1418 230 124 47 chr15 45705357 45705826 -55674695 + MLT1D LTR MaLR 1 505 0 1667 234 49 28 chr15 45706325 45706914 -55673607 - L1ME3A LINE L1 -3 6167 5536 2199 141 5 16 chr15 45707085 45707453 -55673068 - THE1B LTR MaLR 0 364 1 9982 113 12 69 chr15 45707453 45709128 -55671393 - THE1B-int LTR MaLR 0 1580 1 2249 125 31 17 chr15 45709128 45709487 -55671034 - THE1B LTR MaLR 0 364 1 239 295 31 54 chr15 45710071 45710200 -55670321 + L1PB4 LINE L1 122 247 -5957 3672 227 54 58 chr15 45710405 45711874 -55668647 + L1PB4 LINE L1 355 1829 -4374 2040 139 51 20 chr15 45711874 45712227 -55668294 + THE1B LTR MaLR 1 364 0 11029 104 12 6 chr15 45712227 45713797 -55666724 + THE1B-int LTR MaLR 1 1580 0 2162 90 52 60 chr15 45713797 45714162 -55666359 + THE1B LTR MaLR 1 362 -2 3672 227 54 58 chr15 45714162 45714262 -55666259 + L1PB4 LINE L1 1826 2030 -4173 11826 212 38 5 chr15 45714263 45714328 -55666193 + L1PB4 LINE L1 2283 2344 -3869 486 0 0 0 chr15 45714328 45714382 -55666139 + (TA)n Simple_repeat Simple_repeat 2 55 0 11826 212 38 5 chr15 45714382 45718133 -55662388 + L1PB4 LINE L1 2344 6208 -5 2411 186 10 14 chr15 45718186 45718674 -55661847 - L1MD1 LINE L1 0 6242 5757 300 292 50 8 chr15 45718708 45718828 -55661693 - L1M4 LINE L1 -1873 5692 5568 24 0 0 0 chr15 45719468 45719492 -55661029 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr15 45719736 45719775 -55660746 + AT_rich Low_complexity Low_complexity 1 39 0 261 193 36 24 chr15 45719875 45719958 -55660563 + (TATATG)n Simple_repeat Simple_repeat 4 87 0 228 217 61 0 chr15 45720666 45720781 -55659740 + (TA)n Simple_repeat Simple_repeat 2 123 0 3069 218 41 9 chr15 45721715 45722745 -55657776 - L1M4 LINE L1 -3156 4409 3345 413 287 54 67 chr15 45722777 45723000 -55657521 - MSTB2 LTR MaLR -230 227 8 10805 220 35 21 chr15 45723000 45726701 -55653820 + L1MA9 LINE L1 2350 6108 -204 339 258 48 23 chr15 45726696 45726833 -55653688 + L1M2 LINE L1 1461 1975 -4408 * 546 196 58 65 chr15 45726834 45726972 -55653549 + Tigger2a DNA MER2_type 1 137 -297 411 363 8 17 chr15 45726972 45727209 -55653312 - L1M4 LINE L1 -6199 1367 1133 1933 229 73 12 chr15 45727215 45727997 -55652524 - L1M2c LINE L1 -4593 2505 1659 912 138 17 50 chr15 45729227 45729408 -55651113 - MLT1B LTR MaLR -215 175 1 35 41 0 0 chr15 45730473 45730522 -55649999 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr15 45730536 45730557 -55649964 + AT_rich Low_complexity Low_complexity 1 21 0 583 118 0 0 chr15 45730791 45730884 -55649637 - L1PA15 LINE L1 -8 6157 6065 2150 120 16 46 chr15 45730995 45731362 -55649159 - L1PB1 LINE L1 -2 6149 5794 11083 193 16 15 chr15 45731151 45731364 -55649157 - L1MB2 LINE L1 -163 6008 5797 183 42 0 0 chr15 45731364 45731388 -55649133 + (TA)n Simple_repeat Simple_repeat 1 24 0 11083 193 16 15 chr15 45731388 45731417 -55649104 - L1MB2 LINE L1 -374 5797 5770 511 130 11 0 chr15 45731417 45731509 -55649012 - L1PA15 LINE L1 -8 6157 6065 11083 193 16 15 chr15 45731509 45734581 -55645940 - L1MB2 LINE L1 -401 5770 2721 6559 26 0 0 chr15 45734622 45735383 -55645138 - L1PA4 LINE L1 -3 6152 5392 * 8253 98 12 40 chr15 45735378 45736698 -55643823 + L1P LINE L1 1418 2700 -3446 5723 193 43 9 chr15 45736701 45737977 -55642544 - L1 LINE L1 -2014 5551 4232 6090 69 20 63 chr15 45737988 45739919 -55640602 - SVA Other Other -518 1383 72 306 0 0 0 chr15 45739919 45739953 -55640568 + (GGGAGA)n Simple_repeat Simple_repeat 5 38 0 18258 157 85 7 chr15 45739955 45743540 -55636981 - L1 LINE L1 -3690 3875 17 4138 214 35 42 chr15 45743543 45745188 -55635333 - L1PA13 LINE L1 -3790 3007 1329 3264 223 10 22 chr15 45745183 45745873 -55634648 - L1PA13 LINE L1 -6104 683 2 * 863 329 41 13 chr15 45746126 45746579 -55633942 + L1M2 LINE L1 2 1216 -6369 299 297 79 76 chr15 45747300 45747603 -55632918 + L1M2 LINE L1 1532 1835 -5750 13325 217 43 10 chr15 45747797 45748317 -55632204 + L1PA16 LINE L1 395 897 -5326 2292 83 0 23 chr15 45748317 45748617 -55631904 + AluSg SINE Alu 1 293 -17 13325 217 43 10 chr15 45748617 45753643 -55626878 + L1PA16 LINE L1 897 6214 -9 2347 94 0 0 chr15 45753765 45754064 -55626457 + AluSg SINE Alu 1 299 -11 1308 199 112 85 chr15 45754294 45754786 -55625735 + MLT1D LTR MaLR 1 505 0 326 344 16 0 chr15 45755965 45756093 -55624428 - MIR3 SINE MIR -48 160 31 377 303 106 0 chr15 45757150 45757282 -55623239 + MIR SINE MIR 47 192 -70 227 300 100 0 chr15 45757277 45757367 -55623154 + L2 LINE L2 3207 3305 -8 * 2376 229 53 18 chr15 45757368 45758147 -55622374 - L1 LINE L1 -2316 3830 3025 4745 150 30 54 chr15 45758160 45759171 -55621350 - L1MA7 LINE L1 -2 6289 5304 1544 185 51 15 chr15 45759168 45759503 -55621018 - L1MA7 LINE L1 -163 6128 5782 * 259 162 86 0 chr15 45759503 45759608 -55620913 + (TA)n Simple_repeat Simple_repeat 1 114 0 1232 175 26 4 chr15 45759610 45759844 -55620677 - L1MA7 LINE L1 -504 5787 5549 * 6120 167 24 4 chr15 45759826 45761017 -55619504 - L1MA7 LINE L1 -798 5348 4134 900 172 0 0 chr15 45761015 45761184 -55619337 - L1 LINE L1 -3105 3041 2873 * 403 294 16 0 chr15 45761178 45761304 -55619217 + L1ME LINE L1 5512 5639 -525 * 745 244 65 0 chr15 45761298 45761515 -55619006 - L1MCc LINE L1 -5074 1349 1119 2376 233 45 29 chr15 45761532 45762071 -55618450 - L1M4 LINE L1 -2931 3215 2655 1679 171 150 6 chr15 45762071 45762417 -55618104 + MSTD LTR MaLR 1 396 0 2376 233 45 29 chr15 45762417 45762741 -55617780 - L1M4 LINE L1 -3491 2655 2338 1738 145 60 33 chr15 45762959 45763324 -55617197 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr15 45763643 45763666 -55616855 + AT_rich Low_complexity Low_complexity 1 23 0 1359 161 121 3 chr15 45763877 45764225 -55616296 - Charlie5 DNA MER1_type 0 2624 2236 462 206 10 0 chr15 45764243 45764340 -55616181 - Charlie5 DNA MER1_type -2499 113 16 2055 118 0 0 chr15 45765678 45765957 -55614564 + AluSx SINE Alu 1 279 -33 928 281 63 52 chr15 45766592 45767037 -55613484 - LTR16A LTR ERVL 0 450 1 21 0 0 0 chr15 45767079 45767100 -55613421 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr15 45767133 45767157 -55613364 + (TAGA)n Simple_repeat Simple_repeat 4 27 0 202 152 43 22 chr15 45767216 45767262 -55613259 + (CA)n Simple_repeat Simple_repeat 2 48 0 5607 143 49 21 chr15 45767463 45768592 -55611929 + L1MA4A LINE L1 5137 6298 -5 15666 168 25 114 chr15 45768896 45769991 -55610530 + L1PA13 LINE L1 2159 3350 -4251 2046 108 38 0 chr15 45769991 45770278 -55610243 - AluSq SINE Alu -13 300 3 15666 168 25 114 chr15 45770278 45771960 -55608561 + L1PA13 LINE L1 3350 5180 -2421 2615 70 3 20 chr15 45771960 45772315 -55608206 + MER41A LTR ERV1 118 466 -88 15666 168 25 114 chr15 45772315 45773505 -55607016 + L1PA13 LINE L1 5180 5803 -1798 7499 28 1 1 chr15 45773505 45774513 -55606008 + L1PA4 LINE L1 5142 6149 -6 15666 168 25 114 chr15 45774513 45776158 -55604363 + L1PA13 LINE L1 5803 7593 -8 234 222 48 32 chr15 45776177 45776240 -55604281 + MIR3 SINE MIR 139 202 -6 24 77 0 0 chr15 45776800 45776852 -55603669 + AT_rich Low_complexity Low_complexity 1 52 0 486 0 0 0 chr15 45777212 45777266 -55603255 + (TA)n Simple_repeat Simple_repeat 1 54 0 255 238 0 16 chr15 45777371 45777434 -55603087 + (TATG)n Simple_repeat Simple_repeat 2 63 0 33 80 0 0 chr15 45777454 45777529 -55602992 + AT_rich Low_complexity Low_complexity 1 75 0 27 0 0 0 chr15 45778150 45778177 -55602344 + AT_rich Low_complexity Low_complexity 1 27 0 426 20 0 0 chr15 45778207 45778258 -55602263 + (CA)n Simple_repeat Simple_repeat 2 52 0 726 206 0 0 chr15 45778295 45778426 -55602095 + FLAM_C SINE Alu 1 131 -12 925 269 67 0 chr15 45778852 45779135 -55601386 - L1MC4 LINE L1 -144 7898 7597 2181 190 53 0 chr15 45779197 45779671 -55600850 - L1MA9 LINE L1 0 6312 5814 2188 60 15 96 chr15 45779696 45780030 -55600491 - AluY SINE Alu 0 311 5 216 324 149 22 chr15 45780209 45780564 -55599957 + L2 LINE L2 1313 1712 -1602 305 301 61 66 chr15 45780570 45780766 -55599755 - L2 LINE L2 -461 2853 2659 950 258 20 0 chr15 45781178 45781422 -55599099 - LTR53 LTR ERVL 0 519 271 1465 113 0 28 chr15 45782637 45782849 -55597672 + AluSx SINE Alu 1 206 -106 1724 147 7 30 chr15 45783091 45783391 -55597130 + AluJo SINE Alu 1 293 -19 272 169 88 0 chr15 45783423 45783501 -55597020 + MIR SINE MIR 58 145 -63 512 180 129 61 chr15 45784440 45784609 -55595912 - MIR SINE MIR -62 146 16 342 0 0 0 chr15 45784790 45784828 -55595693 + (CA)n Simple_repeat Simple_repeat 2 39 0 3795 59 0 0 chr15 45785384 45785861 -55594660 - L1P LINE L1 -1009 5137 4661 519 143 0 0 chr15 45786292 45786369 -55594152 + AluJ/FLAM SINE Alu 2 78 -234 391 167 0 0 chr15 45786370 45786430 -55594091 + AluJ/F(R)AM SINE Alu 147 206 -105 1629 124 0 17 chr15 45786530 45786763 -55593758 - AluSq SINE Alu -84 229 1 2236 186 30 5 chr15 45786764 45787194 -55593327 - L1MC/D LINE L1 -422 5820 5380 261 146 0 18 chr15 45787194 45787249 -55593272 + MER113 DNA MER1_type? 94 147 -374 1544 174 16 0 chr15 45787251 45787504 -55593017 + AluJb SINE Alu 37 293 -19 919 130 6 43 chr15 45787527 45787689 -55592832 + MER5A DNA MER1_type 2 157 -32 965 114 0 0 chr15 45787913 45788044 -55592477 + THE1C LTR MaLR 245 375 0 5960 107 28 94 chr15 45788063 45789089 -55591432 + THE1C-int LTR MaLR 21 979 -601 26249 43 1 1 chr15 45789236 45793046 -55587475 + L1PA4 LINE L1 2346 6155 0 2274 98 65 0 chr15 45793046 45793371 -55587150 - HERVK22 LTR ERVK -6489 348 3 2418 180 11 28 chr15 45793373 45793839 -55586682 - LTR22A LTR ERVK 0 458 1 223 281 85 12 chr15 45793930 45794012 -55586509 + MIR SINE MIR 98 185 -77 1071 274 4 0 chr15 45794018 45794263 -55586258 + MIR SINE MIR 5 250 -12 209 313 16 0 chr15 45794282 45794346 -55586175 + MIR SINE MIR 197 261 -1 26 50 0 0 chr15 45795125 45795165 -55585356 + AT_rich Low_complexity Low_complexity 1 40 0 668 279 97 13 chr15 45795226 45795463 -55585058 + MIR SINE MIR 6 262 0 463 276 102 123 chr15 45796662 45797133 -55583388 + L2 LINE L2 2810 3270 -2 333 252 187 0 chr15 45797463 45797586 -55582935 - MLT1F1 LTR MaLR -3 564 419 1431 213 10 7 chr15 45797597 45797888 -55582633 + MLT1A1 LTR MaLR 10 301 -64 10218 103 5 1 chr15 45797995 45799420 -55581101 - L1P LINE L1 -4715 1431 1 3320 192 10 16 chr15 45799423 45800048 -55580473 + HERVK22 LTR ERVK 341 961 -5876 35645 95 6 4 chr15 45800162 45804842 -55575679 + HERVK22 LTR ERVK 767 5458 -1379 1535 188 3 24 chr15 45804844 45805137 -55575384 + LTR22A LTR ERVK 172 458 0 427 269 96 12 chr15 45806186 45806353 -55574168 - MIR3 SINE MIR -10 198 18 500 287 72 12 chr15 45806423 45806590 -55573931 - MER5B DNA MER1_type 0 178 2 369 181 0 14 chr15 45806603 45806675 -55573846 + L1MC1 LINE L1 6254 6324 -9 2200 105 3 3 chr15 45806678 45806972 -55573549 + AluSg SINE Alu 3 296 -14 458 288 111 10 chr15 45807375 45807573 -55572948 - MIR SINE MIR -13 249 32 290 331 84 14 chr15 45808815 45808957 -55571564 - L2 LINE L2 0 3272 3121 183 167 0 0 chr15 45809721 45809763 -55570758 + (TA)n Simple_repeat Simple_repeat 1 42 0 25 31 0 0 chr15 45809838 45809870 -55570651 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr15 45809887 45809909 -55570612 + AT_rich Low_complexity Low_complexity 1 22 0 3974 186 5 17 chr15 45810262 45811069 -55569452 + L1 LINE L1 4126 4922 -1224 391 158 26 0 chr15 45811075 45811151 -55569370 - L1P LINE L1 -967 5179 5102 5993 111 41 3 chr15 45811170 45812376 -55568145 + L1PA16 LINE L1 4927 6166 0 790 223 104 23 chr15 45812412 45812632 -55567889 + MIR SINE MIR 6 243 -19 194 235 143 31 chr15 45812623 45812721 -55567800 - MIR SINE MIR -76 186 78 * 644 304 69 11 chr15 45813259 45813519 -55567002 + L3 LINE CR1 1237 1511 -66 1928 107 97 13 chr15 45814373 45814681 -55565840 + MSTB LTR MaLR 1 334 -92 493 234 13 45 chr15 45814748 45814902 -55565619 + MER104 DNA Tc2 32 180 0 43 35 0 0 chr15 45815243 45815300 -55565221 + AT_rich Low_complexity Low_complexity 1 57 0 225 0 0 0 chr15 45817492 45817517 -55563004 + (TC)n Simple_repeat Simple_repeat 2 26 0 373 340 27 0 chr15 45817617 45817764 -55562757 - MIR3 SINE MIR -29 179 29 209 180 0 33 chr15 45817943 45818004 -55562517 + CT-rich Low_complexity Low_complexity 1 59 0 553 258 92 92 chr15 45818828 45819294 -55561227 + LTR37B LTR ERV1 3 468 0 457 252 49 0 chr15 45819297 45819420 -55561101 - MIR SINE MIR -77 185 57 23 54 0 0 chr15 45819603 45819640 -55560881 + AT_rich Low_complexity Low_complexity 1 37 0 417 177 0 0 chr15 45821797 45821876 -55558645 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 669 310 17 17 chr15 45822832 45823122 -55557399 - AluY SINE Alu -9 292 3 308 354 80 19 chr15 45824263 45824475 -55556046 - MIR SINE MIR -24 238 14 419 171 45 27 chr15 45824864 45824975 -55555546 - MER103 DNA DNA -44 122 10 352 340 80 6 chr15 45825979 45826141 -55554380 - MIR3 SINE MIR -2 206 33 25 31 0 0 chr15 45826166 45826198 -55554323 + AT_rich Low_complexity Low_complexity 1 32 0 482 291 79 31 chr15 45826208 45826435 -55554086 - MIR SINE MIR -9 253 16 309 176 118 0 chr15 45826714 45826782 -55553739 + MER5A DNA MER1_type 37 112 -77 412 256 88 50 chr15 45827206 45827366 -55553155 + MIR SINE MIR 32 197 -65 571 252 17 0 chr15 45828347 45828466 -55552055 - FLAM_A SINE Alu -16 126 6 247 250 0 0 chr15 45828893 45828945 -55551576 + (TG)n Simple_repeat Simple_repeat 1 52 0 603 252 183 62 chr15 45829550 45829970 -55550551 + L2 LINE L2 2843 3313 0 985 285 49 19 chr15 45830466 45830835 -55549686 - L1ME4a LINE L1 -194 5927 5548 22 0 0 0 chr15 45830896 45830918 -55549603 + AT_rich Low_complexity Low_complexity 1 22 0 3004 151 26 45 chr15 45830976 45831579 -55548942 - L1MD3 LINE L1 0 7995 7404 617 237 0 0 chr15 45831579 45831697 -55548824 - MLT1F1 LTR MaLR -442 125 8 268 291 39 48 chr15 45831734 45831837 -55548684 - MIR SINE MIR -86 122 21 438 258 152 7 chr15 45832512 45832663 -55547858 - MIR SINE MIR -60 202 30 401 255 130 37 chr15 45832786 45832947 -55547574 - MIR SINE MIR -65 197 22 21 71 0 0 chr15 45833550 45833592 -55546929 + AT_rich Low_complexity Low_complexity 1 42 0 562 273 99 21 chr15 45833745 45834027 -55546494 - L1MC4a LINE L1 -1886 5922 5619 261 284 0 14 chr15 45834085 45834159 -55546362 - L1MC4a LINE L1 -2181 5627 5555 1807 110 48 21 chr15 45834814 45835105 -55545416 + AluSq SINE Alu 1 299 -14 246 282 99 28 chr15 45835498 45835750 -55544771 - HAL1b LINE L1 -629 719 450 264 279 39 31 chr15 45835888 45836017 -55544504 - HAL1 LINE L1 -1161 1346 1217 357 231 48 29 chr15 45838160 45838264 -55542257 + MIR SINE MIR 13 118 -144 4107 188 40 23 chr15 45838278 45839117 -55541404 - MER21B LTR ERV1 -9 854 1 463 250 44 15 chr15 45839117 45839253 -55541268 + MIR SINE MIR 113 252 -10 233 277 116 18 chr15 45839277 45839389 -55541132 + L3 LINE CR1 1453 1575 -2 1150 106 18 12 chr15 45841275 45841445 -55539076 + AluY SINE Alu 1 171 -140 1789 157 107 25 chr15 45842026 45842077 -55538444 + MER63B DNA MER1_type 1 46 -1016 2314 82 0 0 chr15 45842077 45842386 -55538135 + AluY SINE Alu 1 309 0 1789 157 107 25 chr15 45842386 45842734 -55537787 + MER63B DNA MER1_type 46 434 -2 606 276 75 22 chr15 45843620 45843939 -55536582 + L1ME3A LINE L1 5627 5962 -208 250 246 125 69 chr15 45843960 45844192 -55536329 + L1ME3A LINE L1 5926 6170 0 739 237 0 0 chr15 45844244 45844383 -55536138 + MER5B DNA MER1_type 38 176 -2 650 251 87 6 chr15 45844749 45844932 -55535589 - MIR SINE MIR 0 262 65 726 33 0 0 chr15 45844935 45845025 -55535496 + L1MA1 LINE L1 6204 6293 -9 26 0 0 0 chr15 45845025 45845051 -55535470 + AT_rich Low_complexity Low_complexity 1 26 0 873 167 151 21 chr15 45845087 45845326 -55535195 + Charlie1b DNA MER1_type 45 314 -209 1954 151 6 10 chr15 45845568 45845879 -55534642 + AluSx SINE Alu 1 310 -2 1423 139 204 0 chr15 45845968 45846248 -55534273 + MER1B DNA MER1_type 1 337 0 790 264 136 45 chr15 45846280 45846780 -55533741 + L2 LINE L2 2734 3306 -7 265 303 97 48 chr15 45846839 45847067 -55533454 + L2 LINE L2 2283 2521 -793 399 248 186 0 chr15 45847482 45847627 -55532894 + MIR SINE MIR 79 250 -12 2322 101 3 0 chr15 45848059 45848357 -55532164 - AluSq SINE Alu -14 299 1 331 251 150 12 chr15 45850429 45850596 -55529925 + MIR3 SINE MIR 11 200 -8 264 347 32 16 chr15 45851329 45851453 -55529068 + L2 LINE L2 3141 3266 -6 2082 134 0 0 chr15 45852565 45852875 -55527646 - AluSx SINE Alu 0 310 1 2123 121 3 7 chr15 45853083 45853380 -55527141 + AluSc SINE Alu 1 296 -13 318 333 95 32 chr15 45854054 45854243 -55526278 + L1MEd LINE L1 316 516 -5603 2528 147 28 2 chr15 45854624 45855061 -55525460 + L1MB2 LINE L1 5719 6166 -5 380 259 45 0 chr15 45855074 45855186 -55525335 + MIR SINE MIR 146 262 0 199 267 0 0 chr15 45855502 45855547 -55524974 + L2 LINE L2 3268 3312 -1 366 340 97 72 chr15 45855596 45856069 -55524452 - L1M2 LINE L1 -5897 952 468 460 171 0 12 chr15 45857139 45857221 -55523300 + MER5A DNA MER1_type 109 189 0 24 32 0 0 chr15 45858447 45858478 -55522043 + AT_rich Low_complexity Low_complexity 1 31 0 210 37 0 0 chr15 45859069 45859096 -55521425 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 305 282 145 0 chr15 45859450 45859581 -55520940 - MIR SINE MIR -56 206 57 340 317 139 57 chr15 45860866 45861292 -55519229 + L2 LINE L2 2780 3272 0 22 0 0 0 chr15 45863561 45863583 -55516938 + AT_rich Low_complexity Low_complexity 1 22 0 2304 94 3 3 chr15 45865629 45865927 -55514594 + AluSp SINE Alu 1 298 -15 243 250 15 29 chr15 45866584 45866652 -55513869 + Charlie8 DNA MER1_type 26 92 -2325 301 211 73 49 chr15 45867774 45867897 -55512624 - L1ME4a LINE L1 -2 6119 5994 216 158 0 0 chr15 45867968 45868006 -55512515 + (CA)n Simple_repeat Simple_repeat 2 39 0 797 283 66 30 chr15 45868021 45868428 -55512093 - L1ME4a LINE L1 -203 5918 5497 227 217 33 0 chr15 45869550 45869610 -55510911 + GA-rich Low_complexity Low_complexity 2 63 0 295 283 58 58 chr15 45869641 45869814 -55510707 - MIR SINE MIR -70 192 20 624 285 60 10 chr15 45869984 45870184 -55510337 + MIR SINE MIR 20 229 -33 3872 195 60 40 chr15 45870278 45871199 -55509322 + L1M2 LINE L1 9 947 -5902 7605 151 50 9 chr15 45871303 45873381 -55507140 - L1MA4A LINE L1 -386 6619 4463 1200 203 11 63 chr15 45873382 45873653 -55506868 - AluJb SINE Alu -19 293 37 348 132 0 0 chr15 45873653 45873706 -55506815 + AluJb SINE Alu 56 108 -194 9202 178 19 41 chr15 45873733 45877253 -55503268 - L1MA4A LINE L1 -2376 4472 1031 1257 162 24 0 chr15 45877811 45878058 -55502463 + L1MA4A LINE L1 6040 6292 -11 22 35 0 0 chr15 45878098 45878127 -55502394 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr15 45878180 45878204 -55502317 + AT_rich Low_complexity Low_complexity 1 24 0 322 311 46 33 chr15 45878918 45879069 -55501452 - MER5A DNA MER1_type 0 189 37 221 143 0 20 chr15 45879333 45879382 -55501139 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 317 326 127 22 chr15 45879808 45880084 -55500437 + L3 LINE CR1 441 745 -832 2481 71 0 0 chr15 45881668 45881979 -55498542 - AluY SINE Alu 0 311 1 310 125 0 0 chr15 45886765 45886813 -55493708 + L2 LINE L2 3266 3313 0 22 0 0 0 chr15 45887060 45887082 -55493439 + AT_rich Low_complexity Low_complexity 1 22 0 1797 211 43 31 chr15 45887514 45888026 -55492495 - Charlie1b DNA MER1_type -5 518 1 283 331 39 8 chr15 45888038 45888168 -55492353 + MIR3 SINE MIR 72 205 -3 378 308 135 44 chr15 45888469 45889025 -55491496 + L2 LINE L2 2091 2764 -550 414 342 125 44 chr15 45890546 45891201 -55489320 - L2 LINE L2 -8 3264 2550 929 192 22 6 chr15 45891417 45891599 -55488922 + MER5A DNA MER1_type 2 186 -3 250 201 22 114 chr15 45891692 45891799 -55488722 + MIR SINE MIR 46 145 -63 197 344 146 45 chr15 45891899 45892954 -55487567 - L2 LINE L2 -917 2397 1236 877 245 14 19 chr15 45893113 45893325 -55487196 + MIR SINE MIR 2 212 -50 31 0 0 0 chr15 45893331 45893362 -55487159 + AT_rich Low_complexity Low_complexity 1 31 0 353 217 0 0 chr15 45893379 45893439 -55487082 + MIR SINE MIR 199 258 -4 436 272 11 83 chr15 45894106 45894286 -55486235 - MIR SINE MIR -31 231 65 41 36 0 0 chr15 45894521 45894576 -55485945 + AT_rich Low_complexity Low_complexity 1 55 0 327 254 67 85 chr15 45894604 45894828 -55485693 + L1MC4a LINE L1 5827 6046 -1762 569 303 126 60 chr15 45894974 45895802 -55484719 + L1MEd LINE L1 6 887 -5232 749 254 24 91 chr15 45896938 45897277 -55483244 + MER46C DNA MER2_type 23 338 0 405 255 35 35 chr15 45897680 45897821 -55482700 - MIR SINE MIR -3 259 119 304 283 22 66 chr15 45898022 45898248 -55482273 - HAL1 LINE L1 -10 2497 2282 1653 255 116 42 chr15 45898678 45899518 -55481003 - HAL1 LINE L1 -633 1874 973 252 207 17 0 chr15 45899933 45899991 -55480530 - MER96 DNA MER1_type? 0 175 117 537 232 27 0 chr15 45900005 45900117 -55480404 - L2 LINE L2 0 3313 3199 743 325 88 15 chr15 45900330 45900659 -55479862 - L2 LINE L2 -3 3269 2917 5018 236 35 14 chr15 45900668 45902305 -55478216 + L1PA15-16 LINE L1 2737 4410 -2439 4971 116 12 5 chr15 45902305 45903056 -55477465 + L1PA16 LINE L1 5410 6165 -1 192 200 0 0 chr15 45903414 45903469 -55477052 + GA-rich Low_complexity Low_complexity 1 55 0 3939 139 8 3 chr15 45904047 45904682 -55475839 + L1PB3 LINE L1 5514 6151 -3 22 0 0 0 chr15 45904683 45904705 -55475816 + AT_rich Low_complexity Low_complexity 1 22 0 1678 78 0 5 chr15 45905121 45905339 -55475182 + AluY SINE Alu 94 310 -1 2734 255 38 25 chr15 45905339 45906348 -55474173 + L1MB1 LINE L1 852 1876 -4508 9782 216 92 27 chr15 45906442 45908796 -55471725 + L1MB1 LINE L1 2092 4291 -2091 4757 169 2 21 chr15 45908796 45909603 -55470918 - MER54B LTR ERVL 0 793 2 9782 216 92 27 chr15 45909603 45909636 -55470885 + L1MB1 LINE L1 4291 4320 -2062 2227 93 3 29 chr15 45909636 45909946 -55470575 + AluSc SINE Alu 1 302 -7 9782 216 92 27 chr15 45909946 45910644 -55469877 + L1MB1 LINE L1 4320 5407 -975 2114 97 3 44 chr15 45910644 45910942 -55469579 + AluSg SINE Alu 3 288 -22 9782 216 92 27 chr15 45910942 45911041 -55469480 + L1MB1 LINE L1 5407 5498 -884 24599 148 34 16 chr15 45911041 45913077 -55467444 - L1P3 LINE L1 -746 5715 3717 216 86 0 0 chr15 45913077 45913112 -55467409 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 24599 148 34 16 chr15 45913112 45916618 -55463903 - L1P3 LINE L1 -2744 3717 4 1218 94 11 6 chr15 45916619 45916798 -55463723 + MLT2A2 LTR ERVL 295 453 0 5203 161 25 3 chr15 45916798 45917854 -55462667 + L1PA16 LINE L1 5116 6191 0 3178 184 35 3 chr15 45917855 45918484 -55462037 + L1MB1 LINE L1 5718 6366 -38 33 56 0 0 chr15 45918857 45918911 -55461610 + AT_rich Low_complexity Low_complexity 1 54 0 264 286 158 18 chr15 45918991 45919039 -55461482 + HAL1b LINE L1 513 553 -795 1702 171 10 17 chr15 45919039 45919331 -55461190 - AluJo SINE Alu -22 290 1 264 286 158 18 chr15 45919331 45919555 -55460966 + HAL1b LINE L1 553 823 -525 322 351 102 10 chr15 45919959 45920272 -55460249 + L1MC4a LINE L1 2150 2491 -3655 315 295 70 87 chr15 45920332 45922402 -55458119 + L1MC4a LINE L1 2575 4608 -1538 2180 106 17 0 chr15 45922510 45922812 -55457709 - AluSx SINE Alu -5 307 1 254 328 45 8 chr15 45922930 45923064 -55457457 + L1MC4a LINE L1 4882 5020 -1126 1400 260 68 36 chr15 45923254 45923336 -55457185 + L1MC4a LINE L1 5260 5338 -2470 2498 54 0 3 chr15 45923336 45923633 -55456888 + AluY SINE Alu 1 296 -15 1400 260 68 36 chr15 45923633 45924196 -55456325 + L1MC4a LINE L1 5338 5926 -1882 229 251 210 27 chr15 45925034 45925368 -55455153 - L1ME4a LINE L1 -2 6119 5725 6085 77 37 6 chr15 45925435 45926405 -55454116 + L1PA11 LINE L1 5176 6173 -1 283 294 0 33 chr15 45927278 45927370 -55453151 - L1ME4a LINE L1 -415 5706 5618 31826 110 8 55 chr15 45928301 45934767 -55445754 + L1PA7 LINE L1 3 6153 -1 198 283 0 0 chr15 45934870 45934916 -55445605 - L2 LINE L2 -3 3310 3265 21 0 0 0 chr15 45934982 45935003 -55445518 + AT_rich Low_complexity Low_complexity 1 21 0 969 210 43 30 chr15 45935601 45935834 -55444687 - MER1B DNA MER1_type 0 339 104 21 71 0 0 chr15 45936103 45936145 -55444376 + AT_rich Low_complexity Low_complexity 1 42 0 268 314 7 29 chr15 45936182 45936322 -55444199 - L1ME4a LINE L1 -480 5641 5505 659 280 88 89 chr15 45936372 45936559 -55443962 - L1ME4a LINE L1 -747 5399 5213 2109 121 0 22 chr15 45936559 45936873 -55443648 - AluSq SINE Alu -6 307 1 822 143 32 0 chr15 45936881 45937007 -55443514 - FLAM_A SINE Alu -3 130 1 659 280 88 89 chr15 45937007 45937663 -55442858 - L1ME4a LINE L1 -940 5206 4548 1670 139 8 4 chr15 45937839 45938106 -55442415 + MER2 DNA MER2_type 75 342 -3 328 247 25 12 chr15 45938439 45938520 -55442001 + MIR3 SINE MIR 119 200 -8 441 304 6 0 chr15 45938899 45939018 -55441503 - MIR SINE MIR -61 147 24 185 267 33 17 chr15 45940054 45940114 -55440407 + MIR SINE MIR 158 218 -44 412 265 7 102 chr15 45940311 45940458 -55440063 - MIR3 SINE MIR -31 177 45 432 55 0 0 chr15 45941221 45941276 -55439245 + (CA)n Simple_repeat Simple_repeat 2 56 0 233 75 25 0 chr15 45941297 45941337 -55439184 + (TG)n Simple_repeat Simple_repeat 1 41 0 797 234 68 19 chr15 45941516 45941721 -55438800 - MIR SINE MIR -3 259 45 389 305 0 65 chr15 45942442 45942596 -55437925 - MIR SINE MIR -35 227 84 947 220 6 0 chr15 45943157 45943334 -55437187 - MER45A DNA AcHobo 0 178 1 691 142 33 33 chr15 45944924 45945044 -55435477 + 5S rRNA rRNA 1 120 -1 1087 288 107 87 chr15 45945220 45946409 -55434112 + L2 LINE L2 1764 2976 -338 359 308 8 62 chr15 45946403 45946533 -55433988 + L2 LINE L2 3137 3259 -13 * 511 302 68 10 chr15 45946564 45946756 -55433765 - MIR SINE MIR -47 215 13 991 290 53 31 chr15 45946797 45947307 -55433214 - LTR33 LTR ERVL 0 521 1 2483 71 0 0 chr15 45947582 45947876 -55432645 - AluY SINE Alu -16 295 2 337 286 48 32 chr15 45948302 45948428 -55432093 - MIR SINE MIR -61 201 74 29 28 0 0 chr15 45948428 45948464 -55432057 + AT_rich Low_complexity Low_complexity 1 36 0 241 214 0 0 chr15 45950904 45950959 -55429562 + polypurine Low_complexity Low_complexity 1 55 0 518 342 57 0 chr15 45954512 45954705 -55425816 + MIR SINE MIR 38 241 -21 417 323 62 0 chr15 45954791 45954921 -55425600 + L2 LINE L2 3133 3270 -2 746 212 76 68 chr15 45956911 45957147 -55423374 - L2 LINE L2 0 3313 3076 329 200 29 14 chr15 45957320 45957390 -55423131 + MLT1J1 LTR MaLR 70 140 -306 462 216 52 9 chr15 45957482 45957598 -55422923 + MLT1I LTR MaLR 277 397 -12 236 333 20 30 chr15 45958660 45958759 -55421762 - L2 LINE L2 -16 3297 3200 181 377 13 0 chr15 45959912 45959989 -55420532 - L3b LINE CR1 -205 1378 1301 180 355 25 25 chr15 45960535 45960656 -55419865 - L3 LINE CR1 -364 1213 1093 4613 25 1 0 chr15 45960717 45961535 -55418986 - L1PA3 LINE L1 -498 5657 4839 4269 22 0 0 chr15 45961535 45962025 -55418496 + L1PA3 LINE L1 5660 6152 -3 5082 173 14 20 chr15 45962139 45963322 -55417199 - L1MD1 LINE L1 -52 6190 5010 1034 258 62 25 chr15 45963300 45963812 -55416709 - L1MD1 LINE L1 -2642 3504 2974 * 679 220 119 37 chr15 45963895 45964113 -55416408 + MIR SINE MIR 17 252 -10 264 352 6 11 chr15 45965117 45965293 -55415228 + GA-rich Low_complexity Low_complexity 2 176 0 363 44 0 0 chr15 45965748 45965793 -55414728 + (TG)n Simple_repeat Simple_repeat 1 45 0 905 250 23 14 chr15 45967044 45967260 -55413261 - MIR SINE MIR 0 262 45 203 188 72 87 chr15 45967776 45967845 -55412676 + L2 LINE L2 3246 3313 0 253 216 159 0 chr15 45967926 45968014 -55412507 - MIR SINE MIR -71 191 90 272 269 39 77 chr15 45968096 45968226 -55412295 - MIR3 SINE MIR -76 132 8 22 35 0 0 chr15 45968467 45968496 -55412025 + AT_rich Low_complexity Low_complexity 1 29 0 212 143 0 0 chr15 45968844 45968879 -55411642 + (GA)n Simple_repeat Simple_repeat 2 36 0 189 0 0 0 chr15 45968970 45968991 -55411530 + (A)n Simple_repeat Simple_repeat 1 21 0 33 0 0 0 chr15 45969574 45969607 -55410914 + AT_rich Low_complexity Low_complexity 1 33 0 633 286 83 44 chr15 45969856 45970108 -55410413 + MIR SINE MIR 1 262 0 254 208 21 0 chr15 45970921 45970969 -55409552 + MER3 DNA MER1_type 42 90 -119 * 431 155 119 0 chr15 45970932 45971016 -55409505 - MER3 DNA MER1_type -6 203 110 181 302 121 43 chr15 45971787 45971903 -55408618 - L2 LINE L2 0 3272 3148 221 330 0 32 chr15 45971913 45972007 -55408514 - MIR3 SINE MIR -15 193 103 307 304 40 8 chr15 45973546 45973671 -55406850 - MIR3 SINE MIR -79 129 1 390 277 0 0 chr15 45976807 45976890 -55403631 + L2 LINE L2 3188 3270 -2 218 266 31 0 chr15 45976973 45977037 -55403484 - MIR SINE MIR -1 261 196 811 148 40 6 chr15 45977042 45977218 -55403303 - MER53 DNA DNA -5 184 3 489 209 9 18 chr15 45977224 45977334 -55403187 - MIR SINE MIR -60 202 94 484 215 50 115 chr15 45977336 45977643 -55402878 + L1MC4a LINE L1 5575 5819 -302 413 195 49 65 chr15 45977851 45977974 -55402547 - MIR SINE MIR -141 121 1 1304 271 43 29 chr15 45978901 45979322 -55401199 - LTR16A LTR ERVL -6 444 18 678 152 0 0 chr15 45979417 45979516 -55401005 - FLAM_C SINE Alu -32 111 13 2203 133 0 0 chr15 45980460 45980769 -55399752 - AluSx SINE Alu -3 309 1 1085 259 218 19 chr15 45982075 45982450 -55398071 + L2 LINE L2 1774 2073 -1241 1543 189 31 3 chr15 45982450 45982736 -55397785 - AluJb SINE Alu -18 294 1 1961 95 7 22 chr15 45982745 45983019 -55397502 - AluSq SINE Alu -9 304 35 1085 259 218 19 chr15 45983019 45983274 -55397247 + L2 LINE L2 2079 2542 -772 397 231 27 41 chr15 45983296 45983443 -55397078 + L1MC5 LINE L1 7641 7785 -176 468 0 0 0 chr15 45983600 45983652 -55396869 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 1134 294 137 16 chr15 45983652 45984337 -55396184 + L2 LINE L2 2544 3309 -4 300 53 0 0 chr15 45986261 45986299 -55394222 + (A)n Simple_repeat Simple_repeat 1 38 0 474 303 37 120 chr15 45987756 45988345 -55392176 + L2 LINE L2 2735 3271 -1 497 287 81 0 chr15 45988790 45988964 -55391557 - MER5A DNA MER1_type -1 188 1 280 333 141 15 chr15 45989121 45989256 -55391265 - MIR3 SINE MIR -54 154 3 342 344 39 8 chr15 45989721 45989849 -55390672 + L2 LINE L2 3124 3255 -17 366 23 0 0 chr15 45989850 45989893 -55390628 + (TGGA)n Simple_repeat Simple_repeat 2 44 0 1234 186 0 0 chr15 45990239 45990449 -55390072 - MER6B DNA MER2_type 0 210 1 224 286 0 0 chr15 45991234 45991290 -55389231 + L2 LINE L2 3216 3271 -1 982 224 46 124 chr15 45991343 45991434 -55389087 - MLT1C LTR MaLR -2 465 368 2330 83 3 26 chr15 45991434 45991747 -55388774 + AluSc SINE Alu 1 306 -3 982 224 46 124 chr15 45991747 45992089 -55388432 - MLT1C LTR MaLR -99 368 66 217 231 0 19 chr15 45992184 45992236 -55388285 + GA-rich Low_complexity Low_complexity 1 51 0 4521 49 16 0 chr15 45994520 45995075 -55385446 - L1PA8 LINE L1 -13 6159 5596 402 260 191 9 chr15 45995100 45995435 -55385086 + L1ME4a LINE L1 5726 6121 0 4130 136 2 0 chr15 45996043 45996670 -55383851 - L1PA16 LINE L1 -10 6156 5529 2096 140 7 0 chr15 45996702 45997010 -55383511 - AluSq SINE Alu -3 310 1 623 251 55 6 chr15 45997085 45997248 -55383273 - MER5B DNA MER1_type -1 177 7 422 271 155 0 chr15 45997965 45998120 -55382401 + MIR SINE MIR 73 251 -11 203 156 44 44 chr15 45998089 45998134 -55382387 + L2 LINE L2 3266 3310 -3 * 287 227 159 0 chr15 45998167 45998255 -55382266 - MIR SINE MIR -73 135 34 723 265 27 5 chr15 45998605 45998828 -55381693 - LTR16A1 LTR ERVL -14 443 216 189 329 51 0 chr15 45999186 45999265 -55381256 - L2 LINE L2 -43 3229 3147 420 339 52 22 chr15 45999899 46000129 -55380392 - MIR SINE MIR -20 242 6 835 231 189 14 chr15 46002631 46002981 -55377540 + LTR33 LTR ERVL 106 516 -5 410 342 91 13 chr15 46003359 46003590 -55376931 - MIR SINE MIR -8 254 6 520 299 63 76 chr15 46003600 46004142 -55376379 - MARNA DNA Mariner -11 575 41 2212 106 10 7 chr15 46004145 46004446 -55376075 + AluSc SINE Alu 1 302 -7 1397 141 5 5 chr15 46004449 46004655 -55375866 + AluSg/x SINE Alu 94 299 -13 873 238 56 10 chr15 46005269 46005571 -55374950 + L1MEc LINE L1 2070 2385 -4011 270 303 13 0 chr15 46005571 46005647 -55374874 - L2 LINE L2 -1018 2296 2220 437 129 0 0 chr15 46005840 46005902 -55374619 - MER8 DNA MER2_type 0 239 178 * 2500 130 46 28 chr15 46005900 46006155 -55374366 + Tigger2 DNA MER2_type 2273 2541 -177 2802 16 0 0 chr15 46006155 46006464 -55374057 + AluYb8 SINE Alu 1 309 -9 2500 130 46 28 chr15 46006464 46006645 -55373876 + Tigger2 DNA MER2_type 2541 2717 -1 372 324 69 14 chr15 46006774 46006919 -55373602 + MIR3 SINE MIR 50 202 -6 297 330 0 0 chr15 46007544 46007632 -55372889 - MIR SINE MIR -18 244 157 220 295 205 18 chr15 46007768 46007880 -55372641 - MIR3 SINE MIR -62 146 14 498 331 39 17 chr15 46008116 46008294 -55372227 + MIR3 SINE MIR 16 197 -11 443 310 90 28 chr15 46008466 46008721 -55371800 + MLT1K LTR MaLR 13 283 -305 369 149 0 0 chr15 46008739 46008806 -55371715 + (TC)n Simple_repeat Simple_repeat 2 68 0 226 0 59 0 chr15 46008877 46008911 -55371610 + (CAAAAA)n Simple_repeat Simple_repeat 3 38 0 604 311 43 10 chr15 46010289 46010498 -55370023 - L3 LINE CR1 -25 1552 1337 490 226 17 0 chr15 46010515 46010630 -55369891 - L1PA16 LINE L1 -5 6161 6045 472 211 10 0 chr15 46010630 46010734 -55369787 + LTR60 LTR ERV1 2 106 -480 1310 146 51 152 chr15 46010821 46010911 -55369610 + LTR60 LTR ERV1 147 245 -341 2183 120 7 0 chr15 46010911 46011211 -55369310 + AluSx SINE Alu 1 302 -10 1310 146 51 152 chr15 46011211 46011553 -55368968 + LTR60 LTR ERV1 245 535 -51 1118 173 30 94 chr15 46011410 46011739 -55368782 + TAR1 Satellite telomeric 4 311 -1800 * 4415 107 8 19 chr15 46011741 46012458 -55368063 - L1PA16 LINE L1 -117 6049 5341 1679 311 92 61 chr15 46012483 46013504 -55367017 - L3 LINE CR1 -266 1311 256 2723 106 0 11 chr15 46013504 46013883 -55366638 + THE1C LTR MaLR 1 375 0 1679 311 92 61 chr15 46013883 46013904 -55366617 - L3 LINE CR1 -1321 256 237 509 320 58 79 chr15 46015190 46015571 -55364950 - L2 LINE L2 -373 2941 2569 883 207 58 81 chr15 46015591 46015852 -55364669 - MIR SINE MIR 0 262 8 213 326 56 34 chr15 46016425 46016514 -55364007 + MIR SINE MIR 116 206 -56 377 248 228 0 chr15 46016600 46016745 -55363776 - MLT1I LTR MaLR 0 409 232 240 279 16 0 chr15 46016852 46016913 -55363608 - MLT1I LTR MaLR -347 62 1 2469 77 0 3 chr15 46016987 46017299 -55363222 + AluY SINE Alu 1 311 0 336 299 142 35 chr15 46017565 46017819 -55362702 + MLT1K LTR MaLR 289 569 -19 198 103 0 0 chr15 46018577 46018606 -55361915 + (CCA)n Simple_repeat Simple_repeat 1 29 0 198 0 0 0 chr15 46018693 46018715 -55361806 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 231 266 27 131 chr15 46018715 46018937 -55361584 - L2 LINE L2 -13 3300 3102 182 205 0 77 chr15 46018955 46018994 -55361527 + L2 LINE L2 3031 3066 -206 252 86 0 0 chr15 46019167 46019202 -55361319 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 198 0 0 0 chr15 46019202 46019224 -55361297 + (CA)n Simple_repeat Simple_repeat 2 23 0 251 252 31 24 chr15 46019238 46019365 -55361156 + (TA)n Simple_repeat Simple_repeat 2 129 0 767 191 0 14 chr15 46019368 46019509 -55361012 - FLAM_C SINE Alu -2 141 3 373 278 71 0 chr15 46019727 46019853 -55360668 - MIR SINE MIR -36 226 92 291 54 0 0 chr15 46022005 46022042 -55358479 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 490 282 106 35 chr15 46022932 46023102 -55357419 + MIR SINE MIR 47 228 -34 556 209 165 25 chr15 46023202 46023360 -55357161 - MER5A DNA MER1_type -6 183 4 2448 136 44 5 chr15 46024602 46025014 -55355507 + MSTA LTR MaLR 1 428 0 485 331 154 47 chr15 46025691 46026607 -55353914 + L3 LINE CR1 552 1565 -12 1006 109 10 36 chr15 46027121 46027134 -55353387 + L1MA8 LINE L1 6104 6116 -175 2574 141 29 9 chr15 46027134 46027554 -55352967 - MSTA LTR MaLR 0 428 1 1006 109 10 36 chr15 46027554 46027733 -55352788 + L1MA8 LINE L1 6116 6291 0 23 0 0 0 chr15 46028272 46028295 -55352226 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr15 46028686 46028715 -55351806 + AT_rich Low_complexity Low_complexity 1 29 0 423 258 53 33 chr15 46029505 46029822 -55350699 - L1M1 LINE L1 -4073 3033 2702 * 8061 138 14 13 chr15 46029814 46032367 -55348154 - L1MA2 LINE L1 0 6304 3752 1937 238 95 30 chr15 46032375 46034265 -55346256 - L1M1 LINE L1 -4393 2713 1044 1030 162 88 81 chr15 46034279 46034575 -55345946 - L1M1 LINE L1 -6732 298 1 674 171 79 7 chr15 46034605 46034757 -55345764 - L1MC4 LINE L1 -1422 6620 6458 261 163 0 0 chr15 46036904 46036953 -55343568 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 374 310 35 9 chr15 46037312 46037428 -55343093 + L2 LINE L2 3195 3313 0 29 28 0 0 chr15 46037484 46037520 -55343001 + AT_rich Low_complexity Low_complexity 1 36 0 563 175 44 18 chr15 46037849 46037963 -55342558 + L2 LINE L2 3193 3309 -4 189 0 0 0 chr15 46038736 46038757 -55341764 + (A)n Simple_repeat Simple_repeat 1 21 0 258 301 13 77 chr15 46040116 46040272 -55340249 + L2 LINE L2 2915 3060 -212 3116 24 3 0 chr15 46040411 46040780 -55339741 - L1PA4 LINE L1 -4 6151 5782 748 102 7 29 chr15 46041245 46041382 -55339139 + L1MA3 LINE L1 5922 6055 -250 720 180 0 16 chr15 46041382 46041510 -55339011 + FLAM_C SINE Alu 1 126 -17 189 0 0 0 chr15 46041523 46041544 -55338977 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1690 123 69 18 chr15 46041548 46041825 -55338696 + AluSx SINE Alu 1 291 -21 1407 145 15 15 chr15 46041834 46042096 -55338425 + L1MA3 LINE L1 6044 6305 0 561 258 31 0 chr15 46042712 46042840 -55337681 - MER45A DNA AcHobo -38 140 9 3358 110 6 18 chr15 46042843 46043344 -55337177 + LOR1a LTR ERV1 3 497 0 2415 98 86 15 chr15 46043659 46044055 -55336466 + MSTA LTR MaLR 5 428 0 412 232 39 88 chr15 46044181 46044362 -55336159 - L1M4 LINE L1 -2424 3722 3551 637 227 46 31 chr15 46044429 46044642 -55335879 + MLT1B LTR MaLR 1 205 -169 497 126 0 23 chr15 46044662 46044749 -55335772 + MLT1D LTR MaLR 419 503 -2 960 255 0 0 chr15 46044831 46045027 -55335494 + MLT1B LTR MaLR 195 390 0 679 223 66 12 chr15 46045115 46045371 -55335150 - L1M4 LINE L1 -2764 3382 3113 469 305 57 46 chr15 46045404 46045963 -55334558 + HAL1 LINE L1 747 1671 -836 962 195 104 133 chr15 46045963 46046094 -55334427 - MLT1D LTR MaLR -2 503 370 270 0 0 0 chr15 46046094 46046124 -55334397 + (TG)n Simple_repeat Simple_repeat 1 30 0 962 195 104 133 chr15 46046124 46046510 -55334011 - MLT1D LTR MaLR -135 370 1 469 305 57 46 chr15 46046510 46046612 -55333909 + HAL1 LINE L1 1671 1770 -737 873 260 106 54 chr15 46046661 46047181 -55333340 + HAL1 LINE L1 1888 2434 -73 406 259 99 15 chr15 46047243 46047374 -55333147 + MLT1J2 LTR MaLR 67 208 -242 227 191 0 0 chr15 46047496 46047538 -55332983 + MLT1J2 LTR MaLR 386 427 -23 953 242 53 23 chr15 46047555 46047819 -55332702 + MLT1G LTR MaLR 10 281 -309 329 171 77 3 chr15 46047886 46047980 -55332541 + MLT1G3 LTR MaLR 470 549 0 450 208 45 93 chr15 46048150 46048419 -55332102 + MER112 DNA MER1_type 1 256 0 724 204 8 0 chr15 46051748 46051880 -55328641 - FLAM_C SINE Alu 0 133 1 1499 198 61 71 chr15 46053852 46054300 -55326221 - LTR10B LTR ERV1 0 547 16 5786 128 78 20 chr15 46055776 46056859 -55323662 - Tigger3b DNA MER2_type -1 1230 85 1877 65 38 0 chr15 46057164 46057425 -55323096 - L1PA7 LINE L1 0 6154 5884 737 242 58 42 chr15 46058333 46058638 -55321883 + L1ME1 LINE L1 5821 6276 -36 3638 106 19 8 chr15 46059030 46059547 -55320974 + MER1A DNA MER1_type 1 523 -6 21 36 0 0 chr15 46059617 46059645 -55320876 + AT_rich Low_complexity Low_complexity 1 28 0 1915 134 20 7 chr15 46059800 46060106 -55320415 + AluSx SINE Alu 1 310 -2 31 44 0 0 chr15 46060412 46060457 -55320064 + AT_rich Low_complexity Low_complexity 1 45 0 249 98 0 0 chr15 46061351 46061392 -55319129 + (TA)n Simple_repeat Simple_repeat 1 41 0 1693 176 17 3 chr15 46061662 46061952 -55318569 - AluJo SINE Alu -18 294 1 23 78 0 0 chr15 46061967 46062018 -55318503 + AT_rich Low_complexity Low_complexity 1 51 0 337 203 16 0 chr15 46062087 46062151 -55318370 - L2 LINE L2 0 3272 3208 344 276 148 28 chr15 46062255 46062505 -55318016 - L1ME LINE L1 -413 5708 5429 26 64 0 0 chr15 46062630 46062677 -55317844 + AT_rich Low_complexity Low_complexity 1 47 0 419 202 123 136 chr15 46063153 46063355 -55317166 - L1MC4 LINE L1 -3 8039 7839 2074 125 7 0 chr15 46063355 46063652 -55316869 - AluSx SINE Alu -13 299 1 419 202 123 136 chr15 46063652 46063692 -55316829 - L1MC4 LINE L1 -203 7839 7800 1936 112 20 10 chr15 46063815 46064111 -55316410 - AluSx SINE Alu -13 299 1 1052 234 40 99 chr15 46064135 46064640 -55315881 - L1MD2 LINE L1 0 6162 5688 683 241 96 35 chr15 46064646 46064928 -55315593 - L1MC4 LINE L1 -219 7823 7525 1726 224 99 73 chr15 46065100 46065850 -55314671 - L1MD3 LINE L1 -447 7548 6687 323 260 42 21 chr15 46067426 46067522 -55312999 - MIR SINE MIR -49 213 116 1739 185 0 3 chr15 46067596 46067888 -55312633 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr15 46068252 46068273 -55312248 + AT_rich Low_complexity Low_complexity 1 21 0 1221 265 138 11 chr15 46068559 46069205 -55311316 - L1ME3 LINE L1 -290 6266 5549 246 245 22 39 chr15 46069431 46069593 -55310928 - L1ME3 LINE L1 -3928 2612 2452 429 291 85 33 chr15 46069990 46070034 -55310487 - L1MCa LINE L1 -894 1893 1853 201 39 0 0 chr15 46070034 46070060 -55310461 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 429 291 85 33 chr15 46070060 46070448 -55310073 - L1MCa LINE L1 -934 1853 1253 1602 168 10 48 chr15 46070948 46071257 -55309264 + AluJo SINE Alu 1 297 -15 258 105 0 0 chr15 46071605 46071643 -55308878 + (T)n Simple_repeat Simple_repeat 1 38 0 508 269 249 10 chr15 46072390 46072583 -55307938 + MIR SINE MIR 14 252 -10 633 250 42 12 chr15 46072601 46072769 -55307752 + MLT1K LTR MaLR 301 473 -115 1284 267 111 34 chr15 46072784 46073260 -55307261 + LTR33 LTR ERVL 1 513 -8 465 243 101 14 chr15 46073341 46073489 -55307032 - MER103 DNA DNA 0 166 6 368 268 11 20 chr15 46073546 46073658 -55306863 - MIR SINE MIR -70 138 38 206 118 0 0 chr15 46074180 46074214 -55306307 + (T)n Simple_repeat Simple_repeat 1 34 0 319 320 146 22 chr15 46074362 46074540 -55305981 + MLT1H LTR MaLR 240 439 -110 371 314 0 40 chr15 46075235 46075410 -55305111 - MLT2E LTR ERVL 0 628 461 347 230 93 7 chr15 46076133 46076272 -55304249 + HAL1 LINE L1 975 1125 -1382 1789 143 11 11 chr15 46076631 46076918 -55303603 - AluSx SINE Alu -25 287 1 1133 245 212 27 chr15 46077225 46077743 -55302778 + HAL1 LINE L1 1125 1738 -769 2273 113 0 3 chr15 46077772 46078081 -55302440 + AluSx SINE Alu 1 308 -4 1527 246 54 56 chr15 46078115 46078837 -55301684 - L2 LINE L2 0 3313 2494 336 301 64 35 chr15 46078840 46079013 -55301508 + LTR16A LTR ERVL 1 178 -272 402 275 107 0 chr15 46079084 46079215 -55301306 + LTR16A LTR ERVL 301 445 -5 270 234 47 0 chr15 46079241 46079305 -55301216 + HERV16 LTR ERVL 74 140 -4856 1466 343 68 48 chr15 46079540 46080901 -55299620 + ERVL LTR ERVL 3935 5323 -441 368 353 65 0 chr15 46081089 46081242 -55299279 + LTR16A LTR ERVL 1 163 -287 266 256 23 12 chr15 46081325 46081411 -55299110 + MLT1H LTR MaLR 467 553 -2 1329 231 72 24 chr15 46081451 46081827 -55298694 + MLT1D LTR MaLR 69 462 -43 284 272 98 47 chr15 46081920 46082174 -55298347 + MLT1D-int LTR MaLR 322 588 -783 524 254 69 61 chr15 46082622 46082923 -55297598 + MLT1H LTR MaLR 1 335 -260 279 189 0 19 chr15 46082925 46082978 -55297543 - MLT1A2 LTR MaLR 0 374 323 1433 208 22 56 chr15 46083082 46083438 -55297083 - MLT1A2 LTR MaLR 0 374 31 520 249 161 19 chr15 46083452 46083657 -55296864 + MLT1H LTR MaLR 322 555 0 25 65 0 0 chr15 46084693 46084739 -55295782 + AT_rich Low_complexity Low_complexity 1 46 0 441 236 6 28 chr15 46085083 46085265 -55295256 + GA-rich Low_complexity Low_complexity 2 179 0 3048 239 67 14 chr15 46085897 46086926 -55293595 - L1M4 LINE L1 -2090 4056 2973 22 0 0 0 chr15 46087200 46087222 -55293299 + AT_rich Low_complexity Low_complexity 1 22 0 1981 139 14 0 chr15 46087228 46087523 -55292998 + AluSx SINE Alu 6 304 -8 23 54 0 0 chr15 46088038 46088075 -55292446 + AT_rich Low_complexity Low_complexity 1 37 0 270 224 0 0 chr15 46088404 46088453 -55292068 - L2 LINE L2 0 3313 3265 4222 231 84 45 chr15 46088486 46088514 -55292007 - L1M4 LINE L1 -1780 4366 4341 2400 158 30 2 chr15 46088514 46088920 -55291601 - MER47B DNA MER2_type 0 418 2 4222 231 84 45 chr15 46088920 46090590 -55289931 - L1M4 LINE L1 -1805 4341 2603 21 0 0 0 chr15 46090887 46090908 -55289613 + AT_rich Low_complexity Low_complexity 1 21 0 387 353 101 55 chr15 46092312 46092748 -55287773 + L2 LINE L2 2807 3262 -10 956 196 48 0 chr15 46093802 46094011 -55286510 + L1ME3A LINE L1 5944 6162 -8 259 292 76 69 chr15 46094346 46094408 -55286113 - MIR3 SINE MIR -28 180 120 4696 80 26 0 chr15 46094408 46095049 -55285472 - L1PA13 LINE L1 -3 6160 5503 259 292 76 69 chr15 46095049 46095130 -55285391 - MIR3 SINE MIR -88 120 36 643 176 0 66 chr15 46095514 46095650 -55284871 + MER97a DNA MER1_type? 14 140 -754 682 219 124 39 chr15 46097157 46097390 -55283131 + L1ME2 LINE L1 5902 6154 -10 196 29 0 57 chr15 46099334 46099369 -55281152 + (TTTTTA)n Simple_repeat Simple_repeat 2 34 0 282 284 126 21 chr15 46099694 46099789 -55280732 + MIR3 SINE MIR 83 187 -21 1262 283 88 54 chr15 46099854 46100597 -55279924 + HAL1 LINE L1 1664 2431 -76 21 36 0 0 chr15 46100716 46100744 -55279777 + AT_rich Low_complexity Low_complexity 1 28 0 452 121 141 30 chr15 46101043 46101142 -55279379 + MER53 DNA DNA 2 111 -78 195 244 0 0 chr15 46105429 46105470 -55275051 - L2 LINE L2 -217 3055 3015 1665 164 29 25 chr15 46105472 46105772 -55274749 - AluJb SINE Alu 0 301 1 639 333 81 55 chr15 46106329 46106872 -55273649 - L2 LINE L2 -490 2824 2268 297 290 8 69 chr15 46108151 46108282 -55272239 + L2 LINE L2 2325 2447 -867 858 267 27 35 chr15 46108313 46108571 -55271950 + MIR SINE MIR 2 257 -5 6297 136 13 7 chr15 46109354 46110835 -55269686 + L1MA4A LINE L1 4802 6292 -11 537 293 136 5 chr15 46113058 46113256 -55267265 + MIR SINE MIR 2 225 -37 249 139 0 0 chr15 46113269 46113312 -55267209 + (CA)n Simple_repeat Simple_repeat 2 44 0 382 195 39 0 chr15 46113312 46113389 -55267132 - MER82 DNA MER2_type -4 649 570 594 283 85 6 chr15 46113415 46113592 -55266929 + MIR3 SINE MIR 8 198 -10 479 257 11 57 chr15 46114185 46114344 -55266177 - LTR33A LTR ERVL -24 499 347 1114 180 6 80 chr15 46114344 46114612 -55265909 + MER33 DNA MER1_type 1 239 -2346 2102 129 3 0 chr15 46114612 46114907 -55265614 - AluSx SINE Alu -16 296 1 1114 180 6 80 chr15 46114907 46114988 -55265533 + MER33 DNA MER1_type 239 324 0 479 257 11 57 chr15 46114988 46115003 -55265518 - LTR33A LTR ERVL -176 347 333 219 359 134 47 chr15 46115593 46115913 -55264608 - L2 LINE L2 -6 3266 2919 336 257 177 0 chr15 46116132 46116245 -55264276 + L2 LINE L2 3140 3272 0 415 304 0 0 chr15 46116958 46117073 -55263448 + MIR SINE MIR 140 254 -8 2334 74 0 0 chr15 46118093 46118416 -55262105 + AluY SINE Alu 1 323 0 2984 262 71 38 chr15 46118852 46119379 -55261142 - L2 LINE L2 -149 3164 2656 2235 117 7 0 chr15 46119379 46119678 -55260843 - AluSx SINE Alu -11 301 1 2984 262 71 38 chr15 46119678 46120346 -55260175 - L2 LINE L2 -657 2656 1925 219 323 55 51 chr15 46121073 46121290 -55259231 - L2 LINE L2 -967 2347 2130 504 157 0 0 chr15 46122608 46122691 -55257830 - FLAM_A SINE Alu -13 129 47 880 297 135 14 chr15 46123936 46124283 -55256238 - MLT1J2 LTR MaLR 0 450 62 6520 122 56 0 chr15 46124841 46125903 -55254618 + Tigger3b DNA MER2_type 21 1141 -90 857 136 21 0 chr15 46125910 46126050 -55254471 + Tigger3b DNA MER2_type 277 419 -812 598 175 31 0 chr15 46126050 46126147 -55254374 + Tigger3b DNA MER2_type 1132 1231 0 2925 75 90 2 chr15 46126835 46127247 -55253274 - LTR7 LTR ERV1 -2 448 1 7704 94 26 4 chr15 46127247 46128971 -55251550 - HERVH LTR ERV1 0 7713 5769 1236 126 16 0 chr15 46128957 46129147 -55251374 - HERVH LTR ERV1 -3033 4680 4488 * 3338 117 4 6 chr15 46129149 46129652 -55250869 - HERVH LTR ERV1 -3720 3993 3492 970 133 7 0 chr15 46129642 46129792 -55250729 - HERVH LTR ERV1 -4423 3290 3140 * 15694 104 16 26 chr15 46129771 46132660 -55247861 - HERVH LTR ERV1 -4718 2995 1 2951 70 90 2 chr15 46132662 46133074 -55247447 - LTR7 LTR ERV1 -2 448 1 836 280 156 24 chr15 46133341 46134151 -55246370 - L1ME LINE L1 -393 6731 5751 327 104 0 0 chr15 46134151 46134199 -55246322 + (TA)n Simple_repeat Simple_repeat 1 48 0 836 280 156 24 chr15 46134199 46134407 -55246114 - L1ME LINE L1 -1373 5751 5572 5096 117 10 9 chr15 46135968 46137286 -55243235 - L1PA14 LINE L1 -190 5971 4655 2559 241 91 25 chr15 46137273 46139299 -55241222 - L1ME LINE L1 -4084 3024 1243 * 269 213 16 16 chr15 46139299 46139360 -55241161 + L2 LINE L2 2701 2761 -553 288 130 0 0 chr15 46139360 46139406 -55241115 + (TC)n Simple_repeat Simple_repeat 1 46 0 501 343 68 13 chr15 46139486 46139722 -55240799 + L2 LINE L2 2853 3101 -212 413 236 27 27 chr15 46140319 46140429 -55240092 + L2 LINE L2 3163 3272 0 199 268 0 0 chr15 46141057 46141098 -55239423 - MIR3 SINE MIR -10 198 158 251 338 58 7 chr15 46141223 46141362 -55239159 - MIR3 SINE MIR -56 152 7 2058 82 28 0 chr15 46141999 46142317 -55238204 - L1PA7 LINE L1 -752 5394 5068 1336 42 0 0 chr15 46142315 46142482 -55238039 + L1PA7 LINE L1 5395 5561 -593 * 2084 60 11 0 chr15 46142482 46142749 -55237772 + L1PA7 LINE L1 5884 6154 0 1047 267 166 52 chr15 46142762 46143316 -55237205 - MLT1E1 LTR MaLR -36 618 1 216 337 84 11 chr15 46143330 46143425 -55237096 - MIR SINE MIR -152 110 9 295 362 63 30 chr15 46143832 46144100 -55236421 - L2 LINE L2 -565 2749 2473 595 274 98 0 chr15 46144326 46144479 -55236042 + MER5A DNA MER1_type 22 189 0 212 281 8 15 chr15 46145131 46145198 -55235323 + MIR SINE MIR 102 168 -57 238 255 0 0 chr15 46146902 46146953 -55233568 - MIR3 SINE MIR -7 201 151 2256 192 31 41 chr15 46146980 46147491 -55233030 - MER74A LTR ERVL 0 558 53 2422 65 3 0 chr15 46147606 46147913 -55232608 - AluY SINE Alu -3 308 1 818 162 33 17 chr15 46149742 46149956 -55230565 + MLT1D LTR MaLR 1 168 -337 2958 206 109 16 chr15 46150269 46151203 -55229318 - Charlie1 DNA MER1_type -4 2757 1737 353 276 73 0 chr15 46151549 46151672 -55228849 + MIR SINE MIR 131 262 0 258 32 0 0 chr15 46152080 46152111 -55228410 + (CA)n Simple_repeat Simple_repeat 2 32 0 352 333 42 50 chr15 46152682 46152922 -55227599 + MIR SINE MIR 20 257 -5 1725 269 22 50 chr15 46152947 46153643 -55226878 + L1M2a LINE L1 49 724 -6485 4478 223 29 12 chr15 46153952 46155210 -55225311 + L1M2a LINE L1 1750 3049 -4160 2496 101 31 3 chr15 46155296 46155682 -55224839 + L1PA11 LINE L1 5693 6089 -85 1925 148 40 28 chr15 46155686 46156038 -55224483 + THE1B LTR MaLR 7 362 -2 536 56 14 0 chr15 46156038 46156109 -55224412 + L1PA10 LINE L1 6081 6152 -16 214 254 0 17 chr15 46156278 46156337 -55224184 + L2 LINE L2 3161 3218 -95 809 234 61 17 chr15 46156700 46157111 -55223410 + L1M1 LINE L1 3163 3602 -3963 5534 195 68 7 chr15 46157182 46158066 -55222455 + L1M1 LINE L1 3620 4632 -2933 1498 199 3 62 chr15 46158066 46158387 -55222134 + AluJo SINE Alu 1 302 -10 5534 195 68 7 chr15 46158387 46158998 -55221523 + L1M1 LINE L1 4632 5205 -2360 413 303 17 52 chr15 46159004 46159294 -55221227 + L1PA16 LINE L1 2 281 -7300 1563 148 31 34 chr15 46160050 46160375 -55220146 - THE1C LTR MaLR 0 375 52 1926 157 77 32 chr15 46160375 46160814 -55219707 - LTR2B LTR ERV1 0 490 32 382 136 0 0 chr15 46160824 46160890 -55219631 - THE1C LTR MaLR -362 66 1 9378 118 46 13 chr15 46160890 46162113 -55218408 - THE1C-int LTR MaLR 0 1580 296 850 135 142 176 chr15 46162113 46162579 -55217942 - LTR7 LTR ERV1 0 450 1 9378 118 46 13 chr15 46162579 46162885 -55217636 - THE1C-int LTR MaLR -1284 296 1 1834 168 21 24 chr15 46162885 46163261 -55217260 - THE1C LTR MaLR 0 375 1 13857 212 16 17 chr15 46163821 46166300 -55214221 + L1PA16 LINE L1 2319 4800 -2804 216 0 0 0 chr15 46166300 46166324 -55214197 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 13857 212 16 17 chr15 46166324 46169102 -55211419 + L1PA16 LINE L1 4800 7604 0 2696 150 28 4 chr15 46169102 46169603 -55210918 + L1MA6 LINE L1 5769 6288 -12 8839 193 18 5 chr15 46169661 46171352 -55209169 + L1MA3 LINE L1 13 1725 -5840 1123 75 19 47 chr15 46171349 46171562 -55208959 + L1MA3 LINE L1 3366 3572 -3993 * 12918 162 23 10 chr15 46171567 46174232 -55206289 + L1MA3 LINE L1 4027 6756 -968 2270 128 0 0 chr15 46174232 46174537 -55205984 - AluSq SINE Alu -8 305 1 12918 162 23 10 chr15 46174537 46175179 -55205342 + L1MA3 LINE L1 6756 7388 -336 216 313 188 0 chr15 46175273 46175369 -55205152 + L2 LINE L2 3180 3293 -20 190 310 56 0 chr15 46175410 46175481 -55205040 - MIR SINE MIR -3 259 185 1878 275 106 30 chr15 46175498 46176530 -55203991 - L2 LINE L2 0 3313 2187 697 178 8 16 chr15 46176619 46176748 -55203773 - FLAM_C SINE Alu -5 128 1 23 0 0 0 chr15 46176753 46176776 -55203745 + AT_rich Low_complexity Low_complexity 1 23 0 711 318 58 18 chr15 46176834 46177108 -55203413 - L2 LINE L2 -1108 2206 1922 395 331 24 0 chr15 46177139 46177266 -55203255 - MIR SINE MIR -113 149 20 478 328 53 12 chr15 46177280 46177451 -55203070 + MER91A DNA MER1_type 14 191 -5 368 308 19 0 chr15 46177510 46177614 -55202907 + MER5B DNA MER1_type 2 107 -71 297 268 63 31 chr15 46178399 46178526 -55201995 - MIR3 SINE MIR -47 161 31 211 325 171 0 chr15 46178594 46178717 -55201804 - MER5B DNA MER1_type -30 148 5 2618 219 19 55 chr15 46184777 46185520 -55195001 + L1MB7 LINE L1 13 728 -5814 3547 204 28 10 chr15 46185520 46186889 -55193632 + L1MB7 LINE L1 5228 6666 -16 236 358 97 55 chr15 46186914 46187244 -55193277 - L2 LINE L2 -15 3257 2914 39 80 0 0 chr15 46187841 46187929 -55192592 + AT_rich Low_complexity Low_complexity 1 88 0 887 279 96 38 chr15 46189078 46190131 -55190390 + L1M4 LINE L1 1301 2484 -4341 10740 202 45 46 chr15 46190331 46190577 -55189944 - L1MB1 LINE L1 -115 6257 6012 345 47 0 0 chr15 46190577 46190620 -55189901 + (TG)n Simple_repeat Simple_repeat 1 43 0 189 74 0 0 chr15 46190621 46190648 -55189873 + (TA)n Simple_repeat Simple_repeat 1 27 0 10740 202 45 46 chr15 46190648 46191573 -55188948 - L1MB1 LINE L1 -360 6012 5088 2575 176 65 6 chr15 46191573 46192062 -55188459 + MLT2B1 LTR ERVL 1 518 -2 10740 202 45 46 chr15 46192062 46192290 -55188231 - L1MB1 LINE L1 -1284 5088 4861 2731 148 18 12 chr15 46192290 46192790 -55187731 - L1PA15 LINE L1 -9 6156 5654 10740 202 45 46 chr15 46192790 46195059 -55185462 - L1MB1 LINE L1 -1511 4861 2594 1431 234 62 31 chr15 46195056 46195606 -55184915 - L1MB1 LINE L1 -4523 1748 1157 * 529 291 136 48 chr15 46195622 46195917 -55184604 - L1MB1 LINE L1 -5920 361 1 438 279 84 13 chr15 46198198 46198352 -55182169 + MIR SINE MIR 86 250 -12 201 226 0 0 chr15 46198748 46198801 -55181720 + (CA)n Simple_repeat Simple_repeat 2 54 0 375 296 122 15 chr15 46198858 46199054 -55181467 + MIR SINE MIR 15 231 -31 1020 80 0 0 chr15 46199058 46199195 -55181326 - AluY SINE Alu 0 311 175 25 31 0 0 chr15 46199232 46199264 -55181257 + AT_rich Low_complexity Low_complexity 1 32 0 329 275 72 0 chr15 46199398 46199536 -55180985 + L1ME4a LINE L1 5971 6118 -3 345 109 0 0 chr15 46199698 46199753 -55180768 + (TC)n Simple_repeat Simple_repeat 2 56 0 665 176 7 0 chr15 46200167 46200309 -55180212 - Charlie5 DNA MER1_type 0 2624 2482 435 167 0 0 chr15 46200320 46200386 -55180135 - Charlie5 DNA MER1_type -2545 67 2 216 130 43 0 chr15 46200430 46200499 -55180022 + (TA)n Simple_repeat Simple_repeat 2 73 0 236 320 17 61 chr15 46200499 46200680 -55179841 - L1ME LINE L1 -383 5787 5615 557 212 143 44 chr15 46200845 46201048 -55179473 + MIR SINE MIR 40 262 0 234 302 138 31 chr15 46201157 46201316 -55179205 - MIR3 SINE MIR 0 208 33 558 251 49 34 chr15 46201716 46201979 -55178542 - L1ME LINE L1 -5245 825 559 2236 113 3 0 chr15 46202001 46202294 -55178227 - AluSx SINE Alu -18 294 1 524 221 30 23 chr15 46202315 46202446 -55178075 + MIR SINE MIR 87 218 -44 1545 184 48 0 chr15 46202628 46202900 -55177621 - AluJb SINE Alu -21 291 7 1174 164 0 0 chr15 46203243 46203414 -55177107 + AluSg/x SINE Alu 109 279 -33 369 0 0 0 chr15 46203414 46203455 -55177066 + (CA)n Simple_repeat Simple_repeat 1 41 0 809 288 122 36 chr15 46203456 46204089 -55176432 + L2 LINE L2 2531 3222 -91 811 295 95 16 chr15 46204089 46204519 -55176002 - LTR16B LTR ERVL 0 464 1 809 288 122 36 chr15 46204519 46204620 -55175901 + L2 LINE L2 3222 3313 0 248 284 110 29 chr15 46204614 46204736 -55175785 - MIR3 SINE MIR -109 99 4 * 2207 100 10 0 chr15 46205054 46205343 -55175178 - AluSq SINE Alu -21 292 1 188 333 0 0 chr15 46206219 46206267 -55174254 + MER5B DNA MER1_type 54 101 -77 2310 164 11 34 chr15 46206290 46206735 -55173786 - L1MC1 LINE L1 -85 6248 5814 252 161 0 0 chr15 46206735 46206797 -55173724 + T-rich Low_complexity Low_complexity 1 62 0 42535 35 24 0 chr15 46206842 46212851 -55167670 - L1PA2 LINE L1 0 6155 1 6483 199 44 8 chr15 46212851 46214907 -55165614 - L1MC1 LINE L1 -507 5826 3695 2230 251 42 27 chr15 46214925 46215590 -55164931 - L1ME1 LINE L1 -4 6231 5557 * 5131 236 60 36 chr15 46215576 46218272 -55162249 - L1ME1 LINE L1 -2339 3876 1246 186 43 0 0 chr15 46218272 46218295 -55162226 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 3760 39 0 13 chr15 46218305 46218769 -55161752 - L1PA4 LINE L1 0 6155 5698 5131 236 60 36 chr15 46218769 46219299 -55161222 - L1ME1 LINE L1 -4977 1238 615 528 215 8 23 chr15 46219303 46219433 -55161088 - L1ME1 LINE L1 -5842 554 427 427 117 0 0 chr15 46220094 46220154 -55160367 + FLAM_A SINE Alu 41 100 -42 1157 301 100 19 chr15 46220176 46220744 -55159777 + HAL1 LINE L1 403 1016 -1491 546 254 119 53 chr15 46221336 46221587 -55158934 + HAL1 LINE L1 1012 1245 -1262 1926 158 3 10 chr15 46221587 46221890 -55158631 - AluJo SINE Alu -9 303 3 546 254 119 53 chr15 46221890 46222169 -55158352 + HAL1 LINE L1 1245 1577 -930 281 232 24 61 chr15 46222229 46222311 -55158210 + HAL1 LINE L1 1695 1773 -734 276 302 0 0 chr15 46223959 46224045 -55156476 + (TTCGGG)n Simple_repeat Simple_repeat 6 91 0 7760 16 8 0 chr15 46225208 46226195 -55154326 - L1PA3 LINE L1 0 6155 5163 22 0 0 0 chr15 46227464 46227486 -55153035 + AT_rich Low_complexity Low_complexity 1 22 0 748 268 87 44 chr15 46227716 46228197 -55152324 + HAL1 LINE L1 2006 2507 0 1756 244 53 62 chr15 46228340 46228888 -55151633 - MLT1H LTR MaLR 0 549 7 368 217 42 83 chr15 46229346 46229490 -55151031 + L1MD2 LINE L1 6006 6142 -24 2750 19 3 0 chr15 46230879 46231189 -55149332 - AluY SINE Alu 0 311 1 450 282 67 7 chr15 46231450 46231599 -55148922 + MER69A DNA AcHobo 20 177 0 2244 137 39 20 chr15 46231733 46232090 -55148431 - THE1B LTR MaLR 0 364 1 10477 88 93 1 chr15 46232090 46233537 -55146984 - THE1B-int LTR MaLR 0 1580 1 2010 142 60 31 chr15 46233537 46233889 -55146632 - THE1B LTR MaLR 0 364 3 2002 143 7 0 chr15 46234290 46234576 -55145945 - AluSx SINE Alu -24 288 1 356 261 217 25 chr15 46234992 46235195 -55145326 + MIR SINE MIR 20 261 -1 372 315 37 0 chr15 46235786 46235894 -55144627 - MIR3 SINE MIR -21 187 76 22 35 0 0 chr15 46236165 46236194 -55144327 + AT_rich Low_complexity Low_complexity 1 29 0 1039 165 63 44 chr15 46236667 46236873 -55143648 - MER63A DNA MER1_type 0 210 1 914 280 27 27 chr15 46237440 46237769 -55142752 - MARNA DNA Mariner -149 437 109 332 225 27 128 chr15 46237688 46237875 -55142646 + MARNA DNA Mariner 396 563 -23 * 415 319 118 0 chr15 46237895 46238030 -55142491 - MIR SINE MIR -11 251 101 356 288 8 96 chr15 46238598 46238723 -55141798 + MER5B DNA MER1_type 65 178 0 466 254 0 9 chr15 46239010 46239120 -55141401 + MIR SINE MIR 63 171 -91 266 251 121 42 chr15 46239306 46239554 -55140967 + L1M4 LINE L1 5539 5804 -374 236 239 0 30 chr15 46239758 46239825 -55140696 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 514 266 157 56 chr15 46239904 46240419 -55140102 - L1MC4a LINE L1 -1926 5882 5316 289 325 20 33 chr15 46240666 46240871 -55139650 - MIR SINE MIR -6 256 3 336 238 0 0 chr15 46240893 46240977 -55139544 + CT-rich Low_complexity Low_complexity 2 85 0 659 234 102 36 chr15 46242252 46242419 -55138102 + MER45A DNA AcHobo 1 178 0 337 330 28 0 chr15 46243644 46243780 -55136741 + MIR SINE MIR 5 151 -62 667 205 0 16 chr15 46243966 46244093 -55136428 + MER5B DNA MER1_type 44 168 -10 194 313 0 31 chr15 46244185 46244249 -55136272 + L2 LINE L2 3242 3303 -10 530 244 71 41 chr15 46244877 46245074 -55135447 - MIR SINE MIR -40 222 20 390 211 0 0 chr15 46245273 46245349 -55135172 + MER5A DNA MER1_type 34 109 -80 423 270 27 40 chr15 46245440 46245588 -55134933 - MER5A DNA MER1_type -1 188 43 231 158 250 13 chr15 46246060 46246136 -55134385 - MIR SINE MIR -47 215 122 317 335 168 0 chr15 46246471 46246638 -55133883 + MIR SINE MIR 51 245 -17 4920 142 63 3 chr15 46246759 46247655 -55132866 + L1PA16 LINE L1 3068 6157 -9 449 277 61 0 chr15 46248010 46248158 -55132363 - L1MC4 LINE L1 -525 7517 7361 3917 250 66 63 chr15 46248164 46249669 -55130852 - L1MC4 LINE L1 -11 8031 6532 324 0 0 0 chr15 46249669 46249705 -55130816 + (TG)n Simple_repeat Simple_repeat 1 36 0 3917 250 66 63 chr15 46249705 46249783 -55130738 - L1MC4 LINE L1 -1510 6532 6456 3206 112 48 4 chr15 46249783 46250285 -55130236 - L1PB1 LINE L1 -3 6148 5625 3917 250 66 63 chr15 46250285 46251364 -55129157 - L1MC4 LINE L1 -1586 6456 5263 684 180 66 38 chr15 46251659 46251842 -55128679 + MER53 DNA DNA 1 188 -1 186 200 0 0 chr15 46252344 46252379 -55128142 - MIR SINE MIR -114 148 114 395 291 16 59 chr15 46252834 46253015 -55127506 - MIR SINE MIR -63 145 19 210 37 0 0 chr15 46253191 46253218 -55127303 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1823 151 25 50 chr15 46253774 46254132 -55126389 + MLT1A1 LTR MaLR 16 364 -1 3597 128 7 14 chr15 46254155 46254492 -55126029 - Tigger1 DNA MER2_type 0 2418 2080 378 0 0 0 chr15 46254492 46254534 -55125987 + (TTA)n Simple_repeat Simple_repeat 3 44 0 2299 57 3 14 chr15 46254534 46254831 -55125690 - L1PA6 LINE L1 -18 6136 5843 3597 128 7 14 chr15 46254831 46255049 -55125472 - Tigger1 DNA MER2_type -336 2082 1866 21 0 0 0 chr15 46255347 46255368 -55125153 + AT_rich Low_complexity Low_complexity 1 21 0 180 121 15 45 chr15 46258175 46258241 -55122280 + (TTTG)n Simple_repeat Simple_repeat 2 65 0 286 372 74 8 chr15 46258265 46258386 -55122135 + MIR SINE MIR 6 134 -128 436 244 17 89 chr15 46258463 46258643 -55121878 + MIR SINE MIR 75 241 -21 212 282 42 42 chr15 46258815 46258886 -55121635 + MIR SINE MIR 12 82 -180 338 265 0 0 chr15 46258912 46258995 -55121526 - MIR SINE MIR -74 188 106 2063 130 3 10 chr15 46259251 46259558 -55120963 - AluSg SINE Alu -5 305 1 196 66 131 0 chr15 46260535 46260596 -55119925 + (TTAA)n Simple_repeat Simple_repeat 1 69 0 292 230 108 0 chr15 46260970 46261044 -55119477 + L2 LINE L2 3231 3312 -1 2081 114 13 23 chr15 46261131 46261439 -55119082 - AluSg SINE Alu -4 306 2 540 0 0 0 chr15 46261439 46261499 -55119022 + (TC)n Simple_repeat Simple_repeat 2 61 0 443 221 0 9 chr15 46261499 46261612 -55118909 + (TA)n Simple_repeat Simple_repeat 2 113 0 4385 71 3 7 chr15 46261625 46262200 -55118321 - L1PA7 LINE L1 -20 6134 5562 265 337 0 11 chr15 46263721 46263816 -55116705 + GA-rich Low_complexity Low_complexity 1 94 0 22 0 0 0 chr15 46264549 46264571 -55115950 + AT_rich Low_complexity Low_complexity 1 22 0 2461 94 0 0 chr15 46264730 46265039 -55115482 + AluSc SINE Alu 1 309 0 448 243 10 0 chr15 46266098 46266201 -55114320 - MER94 DNA DNA -30 104 1 790 212 0 48 chr15 46266698 46266863 -55113658 - AluJo SINE Alu -9 293 137 929 247 150 32 chr15 46266864 46267456 -55113065 + HAL1 LINE L1 978 1639 -868 1434 104 16 32 chr15 46267502 46267751 -55112770 + L1MA2 LINE L1 6060 6304 0 875 133 0 44 chr15 46269116 46269251 -55111270 - AluJo SINE Alu -183 129 1 2460 57 0 0 chr15 46269350 46269649 -55110872 + AluY SINE Alu 1 299 -12 599 306 6 0 chr15 46271266 46271423 -55109098 - MIR SINE MIR 0 262 105 784 225 61 39 chr15 46272909 46273078 -55107443 + L2 LINE L2 2535 2716 -598 2301 167 94 15 chr15 46273078 46273544 -55106977 - MLT1D LTR MaLR -2 503 1 784 225 61 39 chr15 46273544 46273685 -55106836 + L2 LINE L2 2716 2852 -462 1757 272 147 0 chr15 46273685 46274255 -55106266 + MER69 DNA AcHobo 1 654 -1872 209 73 0 49 chr15 46274266 46274307 -55106214 + (TATATG)n Simple_repeat Simple_repeat 5 43 0 39 38 0 0 chr15 46274328 46274381 -55106140 + AT_rich Low_complexity Low_complexity 1 53 0 658 153 47 19 chr15 46274387 46275168 -55105353 + (TA)n Simple_repeat Simple_repeat 1 803 0 325 188 10 78 chr15 46275191 46275383 -55105138 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 28 0 0 0 chr15 46275389 46275417 -55105104 + AT_rich Low_complexity Low_complexity 1 28 0 291 119 119 0 chr15 46275423 46275582 -55104939 + (TA)n Simple_repeat Simple_repeat 1 178 0 280 114 89 0 chr15 46275601 46275759 -55104762 + (TA)n Simple_repeat Simple_repeat 1 172 0 406 97 67 18 chr15 46275803 46275968 -55104553 + (TA)n Simple_repeat Simple_repeat 2 174 0 234 174 0 0 chr15 46275976 46276022 -55104499 - MER69 DNA AcHobo -1873 653 608 407 236 9 38 chr15 46276074 46276180 -55104341 + MER69 DNA AcHobo 699 801 -425 1194 232 75 7 chr15 46276181 46276595 -55103926 + MER69 DNA AcHobo 2017 2458 -68 1172 161 177 4 chr15 46276624 46276872 -55103649 + AluSx SINE Alu 1 291 -11 638 68 78 0 chr15 46277029 46277132 -55103389 + L1PA8 LINE L1 6062 6172 0 1374 186 15 22 chr15 46277133 46277402 -55103119 + MLT1A1 LTR MaLR 49 315 -50 774 194 0 0 chr15 46277508 46277637 -55102884 - FLAM_C SINE Alu -4 129 1 30 0 0 0 chr15 46277875 46277905 -55102616 + AT_rich Low_complexity Low_complexity 1 30 0 342 312 64 6 chr15 46278581 46278738 -55101783 + L1ME LINE L1 138 303 -5902 932 297 103 24 chr15 46279080 46280032 -55100489 + L1ME LINE L1 786 1812 -4584 860 270 97 33 chr15 46280221 46280783 -55099738 + L1ME LINE L1 2047 2603 -3612 1652 196 120 17 chr15 46280804 46281212 -55099309 + MLT2B1 LTR ERVL 1 450 -70 266 243 10 0 chr15 46281217 46281320 -55099201 + (TA)n Simple_repeat Simple_repeat 1 104 0 324 151 9 160 chr15 46281324 46281430 -55099091 - L1MC4 LINE L1 -1340 6702 6613 238 175 0 32 chr15 46281432 46281495 -55099026 + (TA)n Simple_repeat Simple_repeat 2 62 0 259 315 133 14 chr15 46281598 46281741 -55098780 + L3 LINE CR1 922 1081 -496 183 341 91 11 chr15 46281862 46281950 -55098571 - L2 LINE L2 -39 3233 3139 234 373 101 30 chr15 46282022 46282230 -55098291 + L3 LINE CR1 1186 1378 -199 1582 205 13 3 chr15 46282230 46282528 -55097993 + AluJo SINE Alu 8 308 -4 234 373 101 30 chr15 46282528 46282684 -55097837 + L3 LINE CR1 1378 1576 -1 201 330 146 15 chr15 46282730 46282991 -55097530 - L2 LINE L2 -1021 2293 1999 337 202 87 58 chr15 46284633 46284737 -55095784 - MIR SINE MIR -55 207 101 1953 149 26 0 chr15 46285029 46285331 -55095190 - AluJo SINE Alu 0 312 3 669 129 9 52 chr15 46285523 46285639 -55094882 - ORSL DNA AcHobo 0 275 165 560 186 10 0 chr15 46285785 46285887 -55094634 - ORSL DNA AcHobo -172 103 1 1739 186 0 3 chr15 46286110 46286416 -55094105 - AluJo SINE Alu -3 309 5 2179 83 33 20 chr15 46286597 46286897 -55093624 + AluSp SINE Alu 2 305 -8 205 200 0 0 chr15 46287730 46287770 -55092751 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 457 299 124 24 chr15 46287788 46288166 -55092355 + L1MC4 LINE L1 7459 7874 -168 13310 196 7 2 chr15 46288197 46290960 -55089561 + L1 LINE L1 2252 5028 -1118 1323 225 37 50 chr15 46291406 46291788 -55088733 + L1ME2 LINE L1 5779 6155 -9 29 0 0 0 chr15 46291789 46291818 -55088703 + AT_rich Low_complexity Low_complexity 1 29 0 278 295 19 29 chr15 46292191 46292296 -55088225 + MER5A DNA MER1_type 84 187 -2 206 287 16 107 chr15 46292193 46292315 -55088206 - MER5A DNA MER1_type -75 114 4 * 210 312 97 48 chr15 46293031 46293444 -55087077 + L2 LINE L2 2459 2891 -423 190 365 58 10 chr15 46295972 46296076 -55084445 + MIR SINE MIR 15 123 -139 189 302 63 0 chr15 46296193 46296256 -55084265 - L2 LINE L2 -1497 1817 1751 836 163 7 0 chr15 46296257 46296392 -55084129 + FLAM_C SINE Alu 1 136 -7 405 294 77 12 chr15 46296932 46297102 -55083419 + MIR SINE MIR 9 189 -73 195 162 0 0 chr15 46297874 46297911 -55082610 + (TG)n Simple_repeat Simple_repeat 2 38 0 2538 74 3 0 chr15 46297928 46298237 -55082284 + AluSp SINE Alu 1 310 -3 1850 104 21 11 chr15 46298492 46298771 -55081750 - L1PB1 LINE L1 0 6151 5870 236 285 7 51 chr15 46298813 46298950 -55081571 + CT-rich Low_complexity Low_complexity 2 132 0 294 354 73 17 chr15 46298980 46299158 -55081363 + MIR SINE MIR 60 247 -15 21 57 0 0 chr15 46299170 46299205 -55081316 + AT_rich Low_complexity Low_complexity 1 35 0 221 310 80 121 chr15 46299263 46299420 -55081101 - L2 LINE L2 -3 3269 3107 1710 151 31 57 chr15 46299420 46299738 -55080783 + AluJb SINE Alu 1 310 -2 221 310 80 121 chr15 46299738 46300044 -55080477 - L2 LINE L2 -165 3107 2825 422 298 8 8 chr15 46300103 46300227 -55080294 - MIR SINE MIR -23 239 116 884 163 0 0 chr15 46300507 46300648 -55079873 + FLAM_C SINE Alu 1 141 -2 214 271 110 127 chr15 46300662 46301072 -55079449 - L2 LINE L2 -825 2489 2087 217 234 78 47 chr15 46301112 46301176 -55079345 + L2 LINE L2 3247 3312 -1 36 40 0 0 chr15 46301241 46301291 -55079230 + AT_rich Low_complexity Low_complexity 1 50 0 2132 135 3 0 chr15 46301410 46301721 -55078800 - AluSx SINE Alu 0 312 1 3378 121 40 95 chr15 46301966 46302724 -55077797 + L1MA4 LINE L1 5585 6300 0 23 0 0 0 chr15 46304742 46304765 -55075756 + AT_rich Low_complexity Low_complexity 1 23 0 422 289 83 62 chr15 46304802 46305175 -55075346 + L1MC4a LINE L1 5439 5819 -1989 427 286 257 0 chr15 46305192 46305363 -55075158 + MIR SINE MIR 35 249 -13 269 243 10 48 chr15 46305365 46305468 -55075053 + L1MC4a LINE L1 5806 5904 -1904 22 0 0 0 chr15 46305478 46305500 -55075021 + AT_rich Low_complexity Low_complexity 1 22 0 399 182 215 66 chr15 46305508 46305629 -55074892 + L2 LINE L2 3173 3311 -2 1241 161 18 0 chr15 46305653 46305877 -55074644 + L1MB4 LINE L1 5935 6162 -18 199 307 50 79 chr15 46306634 46306735 -55073786 - L2 LINE L2 -43 3229 3132 21 57 0 0 chr15 46306818 46306853 -55073668 + AT_rich Low_complexity Low_complexity 1 35 0 191 111 0 28 chr15 46306890 46306926 -55073595 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 219 266 18 62 chr15 46307217 46307330 -55073191 + MIR SINE MIR 88 195 -67 1631 147 13 43 chr15 46307529 46308155 -55072366 + LTR8 LTR ERV1 1 689 -2 247 136 0 0 chr15 46308310 46308354 -55072167 - Charlie7 DNA MER1_type -2513 99 56 2315 134 35 7 chr15 46309948 46310373 -55070148 + LTR23 LTR ERV1 1 437 0 450 152 72 3 chr15 46310664 46310801 -55069720 + MER41C LTR ERV1 2 188 -366 450 130 0 0 chr15 46310801 46310870 -55069651 - MER41A LTR ERV1 0 554 486 * 1662 126 4 11 chr15 46310868 46311137 -55069384 - LTR39 LTR ERV1 -501 282 16 * 2938 152 71 63 chr15 46311115 46311765 -55068756 + LTR39 LTR ERV1 129 783 0 2362 86 0 32 chr15 46313161 46313475 -55067046 + AluSg SINE Alu 1 304 -6 1714 197 61 23 chr15 46313613 46314054 -55066467 - MLT1C LTR MaLR 0 467 10 1912 93 0 0 chr15 46314113 46314360 -55066161 + AluSc SINE Alu 63 309 0 301 303 113 44 chr15 46314481 46314755 -55065766 + L2 LINE L2 2931 3223 -49 * 375 281 16 87 chr15 46314748 46314878 -55065643 + MIR3 SINE MIR 25 140 -68 2222 104 3 7 chr15 46314878 46315185 -55065336 + AluY SINE Alu 1 306 -5 375 281 16 87 chr15 46315185 46315239 -55065282 + MIR3 SINE MIR 140 196 -12 2309 119 8 41 chr15 46315247 46315635 -55064886 - THE1C LTR MaLR 0 375 1 697 258 140 0 chr15 46315679 46315865 -55064656 - MIR SINE MIR -45 217 6 187 89 0 44 chr15 46316111 46316156 -55064365 + (TTATA)n Simple_repeat Simple_repeat 3 45 0 45 69 0 0 chr15 46316160 46316247 -55064274 + AT_rich Low_complexity Low_complexity 1 87 0 6491 63 4 1 chr15 46316665 46317503 -55063018 + L1PA7 LINE L1 5312 6151 -3 2044 137 10 51 chr15 46317515 46317682 -55062839 + L1MA9 LINE L1 5786 5958 -354 1888 139 0 50 chr15 46317682 46318005 -55062516 + AluJb SINE Alu 3 309 -3 2044 137 10 51 chr15 46318005 46318232 -55062289 + L1MA9 LINE L1 5958 6164 -148 782 159 23 0 chr15 46318237 46318369 -55062152 + AluJo SINE Alu 1 135 -177 906 102 13 19 chr15 46318373 46318530 -55061991 + L1MA9 LINE L1 6157 6312 0 22 0 0 0 chr15 46318603 46318625 -55061896 + AT_rich Low_complexity Low_complexity 1 22 0 221 355 64 63 chr15 46318761 46319241 -55061280 - L2 LINE L2 -219 3053 2377 572 249 72 28 chr15 46321094 46321275 -55059246 + MIR SINE MIR 9 197 -65 464 307 18 0 chr15 46322482 46322648 -55057873 + L1ME LINE L1 5523 5691 -430 1015 84 22 17 chr15 46322694 46322873 -55057648 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 5304 58 5 0 chr15 46323326 46324000 -55056521 + L1PA8 LINE L1 5496 6172 0 1401 141 12 28 chr15 46324307 46324562 -55055959 + L1PB3 LINE L1 5903 6153 -1 295 355 37 42 chr15 46325113 46325302 -55055219 + MER5A DNA MER1_type 1 188 -1 284 370 111 0 chr15 46325866 46326001 -55054520 - L2 LINE L2 -2 3270 3121 226 71 0 0 chr15 46326045 46326087 -55054434 - MER3 DNA MER1_type -29 180 139 302 125 0 0 chr15 46326096 46326144 -55054377 + L1MB7 LINE L1 6127 6174 -10 310 231 231 8 chr15 46326155 46326285 -55054236 - MER3 DNA MER1_type -50 159 1 247 296 95 39 chr15 46326306 46326485 -55054036 - L2 LINE L2 -187 3085 2897 428 240 34 29 chr15 46326673 46326848 -55053673 - L1ME3A LINE L1 -6 6164 5989 1903 241 65 20 chr15 46327554 46328065 -55052456 - MLT1F LTR MaLR -8 534 1 1631 144 11 58 chr15 46328482 46328663 -55051858 + MER65A LTR ERV1 115 274 -171 2318 98 0 0 chr15 46328663 46328959 -55051562 - AluSx SINE Alu -16 296 1 1631 144 11 58 chr15 46328959 46329124 -55051397 + MER65A LTR ERV1 274 445 0 195 162 0 0 chr15 46329190 46329227 -55051294 + (TTA)n Simple_repeat Simple_repeat 2 38 0 293 318 26 13 chr15 46329546 46329697 -55050824 - MER117 DNA MER1_type -44 153 1 185 189 0 0 chr15 46329710 46329747 -55050774 - MER5B DNA MER1_type -16 162 126 241 147 29 15 chr15 46329757 46329825 -55050696 + L1MC5 LINE L1 7682 7750 -211 2819 236 128 59 chr15 46329827 46330045 -55050476 - L1MC4 LINE L1 -150 7892 7690 1250 193 81 59 chr15 46330045 46330402 -55050119 - MLT1A1 LTR MaLR 0 365 1 2819 236 128 59 chr15 46330402 46331336 -55049185 - L1MC4 LINE L1 -352 7690 6822 2172 114 0 13 chr15 46331336 46331644 -55048877 - AluSx SINE Alu -8 304 1 2819 236 128 59 chr15 46331644 46331791 -55048730 - L1MC4 LINE L1 -1220 6822 6687 1764 133 48 79 chr15 46331791 46332145 -55048376 + MER61A LTR ERV1 1 343 0 2819 236 128 59 chr15 46332145 46332467 -55048054 - L1MC4 LINE L1 -1355 6687 6389 2147 108 3 3 chr15 46332467 46332763 -55047758 + AluSg SINE Alu 1 296 -14 2819 236 128 59 chr15 46332763 46332947 -55047574 - L1MC4 LINE L1 -1653 6389 5943 248 77 26 0 chr15 46333074 46333113 -55047408 + (GAAA)n Simple_repeat Simple_repeat 3 42 0 813 93 187 13 chr15 46334106 46334256 -55046265 + THE1C LTR MaLR 1 176 -199 1475 120 0 0 chr15 46334358 46334566 -55045955 - AluSc SINE Alu -101 208 1 7060 189 82 70 chr15 46334808 46335611 -55044910 - MER65-int LTR ERV1 -2363 2508 1716 1531 119 0 5 chr15 46335611 46335821 -55044700 - AluSg/x SINE Alu -19 293 85 7060 189 82 70 chr15 46335821 46336987 -55043534 - MER65-int LTR ERV1 -3155 1716 1295 585 92 0 0 chr15 46336987 46337085 -55043436 + (TA)n Simple_repeat Simple_repeat 2 99 0 7060 189 82 70 chr15 46337085 46338315 -55042206 - MER65-int LTR ERV1 -3576 1295 81 617 106 21 0 chr15 46338389 46338483 -55042038 - L1PB3 LINE L1 -1 6153 6058 21885 189 46 25 chr15 46338508 46338657 -55041864 - L1M4 LINE L1 -1459 6106 5962 11125 47 7 14 chr15 46338657 46340041 -55040480 + SVA Other Other 2 1376 -10 21885 189 46 25 chr15 46340041 46343430 -55037091 - L1M4 LINE L1 -1603 5962 2646 2662 52 0 0 chr15 46343430 46343739 -55036782 - AluY SINE Alu -2 309 1 21885 189 46 25 chr15 46343739 46345974 -55034547 - L1M4 LINE L1 -4919 2646 193 2121 131 0 19 chr15 46345974 46346286 -55034235 - AluSx SINE Alu -6 306 1 21885 189 46 25 chr15 46346286 46346474 -55034047 - L1M4 LINE L1 -7372 193 10 767 271 139 15 chr15 46346487 46346904 -55033617 + L1MCa LINE L1 949 1313 -5294 360 0 0 0 chr15 46346904 46346944 -55033577 + (CA)n Simple_repeat Simple_repeat 2 41 0 767 271 139 15 chr15 46346944 46347265 -55033256 + L1MCa LINE L1 1313 1983 -4624 1861 198 51 30 chr15 46348138 46348568 -55031953 - MLT1C LTR MaLR -2 465 17 407 309 8 24 chr15 46348606 46348729 -55031792 + MIR SINE MIR 25 145 -63 14871 199 43 22 chr15 46349129 46351569 -55028952 + L1PB1 LINE L1 27 2415 -4452 219 36 0 0 chr15 46351569 46351597 -55028924 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 14871 199 43 22 chr15 46351597 46353074 -55027447 + L1PB1 LINE L1 2415 3860 -3007 9683 50 4 144 chr15 46353074 46354662 -55025859 + SVA Other Other 20 1386 0 14871 199 43 22 chr15 46354662 46356934 -55023587 + L1PB1 LINE L1 3860 6505 -362 240 119 0 71 chr15 46357002 46357086 -55023435 + (TA)n Simple_repeat Simple_repeat 1 78 0 2313 142 8 6 chr15 46357099 46357465 -55023056 + L1PB1 LINE L1 6498 6864 -3 42 20 0 0 chr15 46357465 46357514 -55023007 + AT_rich Low_complexity Low_complexity 1 49 0 187 308 33 22 chr15 46358201 46358292 -55022229 - MIR SINE MIR -142 120 29 692 235 130 0 chr15 46358635 46358797 -55021724 + MER5A DNA MER1_type 1 183 -6 22 35 0 0 chr15 46359413 46359442 -55021079 + AT_rich Low_complexity Low_complexity 1 29 0 754 179 0 22 chr15 46359467 46359601 -55020920 - FLAM_A SINE Alu -1 132 2 466 45 0 15 chr15 46359688 46359754 -55020767 - L1MB3 LINE L1 -7 6176 6112 203 293 35 0 chr15 46360112 46360170 -55020351 + L2 LINE L2 3251 3310 -3 2175 154 28 6 chr15 46360481 46360838 -55019683 + MLT1A1 LTR MaLR 1 365 0 589 278 162 53 chr15 46360996 46361410 -55019111 + MLT1K LTR MaLR 108 566 -22 305 289 89 0 chr15 46364028 46364163 -55016358 - MIR SINE MIR -24 238 92 330 221 152 35 chr15 46364233 46364378 -55016143 + MIR3 SINE MIR 24 185 -23 2023 131 13 7 chr15 46364935 46365233 -55015288 - AluJb SINE Alu -12 300 1 226 222 48 16 chr15 46365285 46365348 -55015173 - MIR3 SINE MIR -26 182 118 2239 112 0 3 chr15 46365494 46365797 -55014724 + AluSx SINE Alu 1 302 -10 338 244 10 156 chr15 46366524 46366562 -55013959 - MER5A DNA MER1_type -11 178 136 2480 78 0 0 chr15 46366562 46366869 -55013652 - AluY SINE Alu -4 307 1 338 244 10 156 chr15 46366869 46366896 -55013625 - MER5A DNA MER1_type -53 136 107 2026 144 0 20 chr15 46366896 46367201 -55013320 + AluJb SINE Alu 1 299 -13 338 244 10 156 chr15 46367201 46367339 -55013182 - MER5A DNA MER1_type -82 107 4 1979 103 7 11 chr15 46367365 46367669 -55012852 - AluSc SINE Alu 0 303 1 261 298 0 48 chr15 46367671 46367775 -55012746 - MIR SINE MIR -63 145 47 204 140 40 80 chr15 46369560 46369610 -55010911 + L2 LINE L2 3255 3302 -11 2056 124 0 0 chr15 46369610 46369885 -55010636 + AluSx SINE Alu 1 275 -37 668 107 8 0 chr15 46369888 46370009 -55010512 + (TAGA)n Simple_repeat Simple_repeat 1 122 0 256 316 81 0 chr15 46372042 46372178 -55008343 + MIR SINE MIR 114 260 -2 989 225 142 56 chr15 46372205 46372600 -55007921 + LTR16A LTR ERVL 16 444 -6 2338 103 0 0 chr15 46372722 46373022 -55007499 + AluSx SINE Alu 9 308 -4 1464 98 13 60 chr15 46373471 46373705 -55006816 - AluJb SINE Alu -5 307 85 203 189 0 0 chr15 46373724 46373761 -55006760 + A-rich Low_complexity Low_complexity 1 37 0 481 314 69 48 chr15 46373951 46374384 -55006137 + L2 LINE L2 2828 3269 -3 1752 161 45 7 chr15 46374817 46375103 -55005418 + AluJo SINE Alu 2 298 -14 254 352 96 21 chr15 46375160 46375647 -55004874 - L2 LINE L2 -181 3091 2564 369 295 37 98 chr15 46375779 46376124 -55004397 + HAL1 LINE L1 2053 2362 -145 2324 69 0 75 chr15 46376124 46376458 -55004063 + AluY SINE Alu 1 309 -2 369 295 37 98 chr15 46376458 46376593 -55003928 + HAL1 LINE L1 2362 2504 -3 2316 51 4 0 chr15 46376742 46377017 -55003504 + AluY SINE Alu 30 305 -6 459 52 0 0 chr15 46377017 46377075 -55003446 + (TA)n Simple_repeat Simple_repeat 2 59 0 393 158 95 11 chr15 46377186 46377281 -55003240 + MER112 DNA MER1_type 1 103 -157 354 278 53 0 chr15 46377360 46377511 -55003010 - MIR SINE MIR -16 246 88 758 159 29 22 chr15 46378156 46378294 -55002227 + FLAM_C SINE Alu 2 140 -3 406 163 113 0 chr15 46379154 46379234 -55001287 - HsTC2 DNA Tc2 -3 1895 1807 387 286 88 0 chr15 46379284 46379476 -55001045 - MIR SINE MIR -30 232 24 23 0 0 0 chr15 46379680 46379703 -55000818 + AT_rich Low_complexity Low_complexity 1 23 0 2189 72 0 14 chr15 46380170 46380446 -55000075 + AluY SINE Alu 39 310 -1 1662 173 35 3 chr15 46380586 46380870 -54999651 + AluJo SINE Alu 1 293 -19 1418 199 48 17 chr15 46381086 46381402 -54999119 + AluJo SINE Alu 1 312 0 1163 275 60 63 chr15 46381655 46381942 -54998579 + L1MC4a LINE L1 5322 5609 -553 1685 146 35 4 chr15 46381942 46382202 -54998319 - AluJo SINE Alu -23 289 22 1163 275 60 63 chr15 46382202 46382497 -54998024 + L1MC4a LINE L1 5609 5544 -618 2492 77 0 0 chr15 46382497 46382794 -54997727 - AluY SINE Alu -14 297 1 1163 275 60 63 chr15 46382794 46382868 -54997653 + L1MC4a LINE L1 5543 5616 -546 1245 184 28 0 chr15 46383073 46383291 -54997230 + MER58A DNA MER1_type 1 224 0 1829 153 43 0 chr15 46383837 46383960 -54996561 + AluJo SINE Alu 1 117 -195 189 0 0 0 chr15 46383960 46383981 -54996540 + (TA)n Simple_repeat Simple_repeat 2 22 0 1829 153 43 0 chr15 46383981 46384139 -54996382 + AluJo SINE Alu 117 294 -18 234 192 0 0 chr15 46384537 46384589 -54995932 + (TA)n Simple_repeat Simple_repeat 2 53 0 1588 158 67 38 chr15 46384610 46384952 -54995569 + MLT1A1 LTR MaLR 1 352 -13 240 35 0 0 chr15 46384952 46384981 -54995540 + (CA)n Simple_repeat Simple_repeat 2 30 0 613 160 173 7 chr15 46384981 46385120 -54995401 + MER46B DNA MER2_type 15 57 -179 1702 157 37 8 chr15 46385122 46385390 -54995131 + AluSx SINE Alu 1 276 -36 2249 111 0 0 chr15 46385391 46385689 -54994832 + AluY SINE Alu 1 298 -13 442 172 20 0 chr15 46385710 46385809 -54994712 + (TA)n Simple_repeat Simple_repeat 2 102 0 216 62 42 21 chr15 46385829 46385877 -54994644 + (TA)n Simple_repeat Simple_repeat 2 50 0 23 0 0 0 chr15 46386068 46386091 -54994430 + AT_rich Low_complexity Low_complexity 1 23 0 870 215 27 32 chr15 46387031 46387250 -54993271 - MER20 DNA MER1_type -1 218 1 451 278 152 36 chr15 46387423 46387732 -54992789 + L2 LINE L2 2964 3308 -5 238 255 0 0 chr15 46388151 46388198 -54992323 + (CA)n Simple_repeat Simple_repeat 1 47 0 2138 136 0 0 chr15 46388449 46388758 -54991763 + AluSx SINE Alu 3 311 -1 498 250 157 23 chr15 46389284 46389500 -54991021 + MIR SINE MIR 17 261 -1 256 231 46 0 chr15 46389509 46389574 -54990947 + L2 LINE L2 3246 3313 0 189 204 23 23 chr15 46390151 46390195 -54990326 + L3 LINE CR1 1525 1568 -9 287 241 162 31 chr15 46390865 46391056 -54989465 + HAL1 LINE L1 154 369 -2138 14967 202 34 10 chr15 46391075 46392729 -54987792 + L1PB1 LINE L1 6 1619 -5248 2402 76 3 16 chr15 46392729 46393044 -54987477 + AluY SINE Alu 1 311 0 14967 202 34 10 chr15 46393044 46397545 -54982976 + L1PB1 LINE L1 1619 6506 -361 306 0 0 0 chr15 46397552 46397586 -54982935 + (TA)n Simple_repeat Simple_repeat 1 34 0 561 125 0 10 chr15 46397586 46397682 -54982839 - L1P LINE L1 -1403 4743 4649 264 165 41 8 chr15 46397682 46397803 -54982718 + (TA)n Simple_repeat Simple_repeat 2 126 0 2245 139 8 21 chr15 46397813 46398186 -54982335 + L1PB1 LINE L1 6498 6865 -2 2831 242 203 50 chr15 46398229 46398703 -54981818 + HAL1 LINE L1 418 818 -1689 2437 80 0 22 chr15 46398703 46399017 -54981504 + AluSg SINE Alu 1 307 -3 2831 242 203 50 chr15 46399017 46400336 -54980185 + HAL1 LINE L1 818 2485 -22 209 189 0 0 chr15 46400340 46400377 -54980144 + CT-rich Low_complexity Low_complexity 2 38 0 347 274 0 70 chr15 46400478 46400635 -54979886 + MIR SINE MIR 31 176 -86 204 299 82 21 chr15 46401275 46401372 -54979149 - L2 LINE L2 -33 3239 3137 369 225 67 8 chr15 46401654 46401774 -54978747 + MER94 DNA DNA 2 128 -6 1764 158 37 10 chr15 46401851 46402149 -54978372 + AluJo SINE Alu 1 306 -6 835 65 37 0 chr15 46402818 46402926 -54977595 + HY1 scRNA scRNA 1 112 0 31 0 0 0 chr15 46402932 46402963 -54977558 + AT_rich Low_complexity Low_complexity 1 31 0 287 262 10 29 chr15 46404445 46404548 -54975973 - MER5A DNA MER1_type -20 169 69 418 264 107 0 chr15 46404884 46405024 -54975497 + MIR SINE MIR 1 155 -107 2534 55 0 0 chr15 46405089 46405382 -54975139 + AluY SINE Alu 1 293 -18 1192 150 50 5 chr15 46405589 46405789 -54974732 - MER3 DNA MER1_type 0 209 1 1504 215 159 2 chr15 46406441 46406869 -54973652 + L1ME3 LINE L1 5667 6161 -1 2083 154 0 0 chr15 46407380 46407686 -54972835 + AluSx SINE Alu 1 306 -6 244 235 74 0 chr15 46407706 46407787 -54972734 + (TATATG)n Simple_repeat Simple_repeat 1 87 0 256 195 156 0 chr15 46408661 46408738 -54971783 + L2 LINE L2 3142 3230 -42 245 328 130 6 chr15 46408782 46408959 -54971562 + MIR3 SINE MIR 10 208 0 2330 114 3 0 chr15 46409026 46409334 -54971187 + AluSx SINE Alu 1 309 -3 232 309 25 25 chr15 46410484 46410565 -54969956 + MIR SINE MIR 27 107 -155 2409 86 0 3 chr15 46410885 46411188 -54969333 + AluSc SINE Alu 1 302 -7 2203 122 0 0 chr15 46411194 46411490 -54969031 + AluSx SINE Alu 3 298 -14 629 236 35 6 chr15 46411810 46411984 -54968537 + MER5A DNA MER1_type 2 180 -9 530 169 19 104 chr15 46411989 46412073 -54968448 + L1MB4 LINE L1 6040 6107 -73 2292 81 3 23 chr15 46412073 46412381 -54968140 - AluSq SINE Alu -10 303 2 530 169 19 104 chr15 46412381 46412450 -54968071 + L1MB4 LINE L1 6107 6180 0 311 265 148 49 chr15 46412486 46412648 -54967873 + MER5B DNA MER1_type 1 178 0 628 308 88 13 chr15 46412664 46412982 -54967539 + L3 LINE CR1 1232 1573 -4 1171 168 0 5 chr15 46413209 46413406 -54967115 + MER3 DNA MER1_type 14 209 0 931 263 12 8 chr15 46414375 46414626 -54965895 + MIR SINE MIR 8 259 -3 1795 160 0 33 chr15 46415095 46415237 -54965284 + AluJo SINE Alu 1 129 -183 2190 128 3 0 chr15 46415237 46415541 -54964980 + AluSx SINE Alu 1 305 -7 1795 160 0 33 chr15 46415541 46415698 -54964823 + AluJo SINE Alu 129 290 -22 536 247 51 0 chr15 46416532 46416690 -54963831 + L1MA8 LINE L1 6126 6291 0 2017 125 0 4 chr15 46417683 46417991 -54962530 + AluSg SINE Alu 1 307 0 264 315 11 11 chr15 46418017 46418106 -54962415 - MER102a DNA MER1_type -1 329 241 385 60 0 0 chr15 46418182 46418232 -54962289 + HY4 scRNA scRNA 23 72 -21 335 299 76 7 chr15 46418277 46418421 -54962100 - MER102a DNA MER1_type -172 158 5 912 143 0 0 chr15 46419973 46420106 -54960415 + FLAM_A SINE Alu 1 133 0 200 258 0 61 chr15 46420166 46420232 -54960289 - L2 LINE L2 0 3272 3211 372 178 14 0 chr15 46420268 46420341 -54960180 - MER5A DNA MER1_type -115 74 1 414 267 30 0 chr15 46420596 46420697 -54959824 - MIR3 SINE MIR -31 177 74 855 163 31 66 chr15 46420748 46420944 -54959577 + MER5A DNA MER1_type 1 189 0 833 203 11 11 chr15 46421070 46421247 -54959274 + MER5B DNA MER1_type 1 177 -1 1444 176 87 7 chr15 46421279 46421421 -54959100 + AluJo SINE Alu 1 130 -182 1676 178 39 4 chr15 46421421 46421702 -54958819 + AluJb SINE Alu 1 291 -21 1444 176 87 7 chr15 46421702 46421848 -54958673 + AluJo SINE Alu 130 312 0 3102 169 13 2 chr15 46421875 46422412 -54958109 + MER67A LTR ERV1 1 543 0 594 267 14 0 chr15 46424504 46424650 -54955871 + MER91A DNA MER1_type 49 196 0 983 138 25 0 chr15 46424797 46424956 -54955565 + L1MB4 LINE L1 6012 6174 -6 1817 159 3 34 chr15 46425220 46425540 -54954981 - AluJo SINE Alu -2 310 1 1541 116 0 58 chr15 46425625 46425866 -54954655 - 7SLRNA srpRNA srpRNA -93 227 1 817 205 115 0 chr15 46426108 46426308 -54954213 + MER58A DNA MER1_type 1 223 -1 288 53 0 0 chr15 46426324 46426362 -54954159 + (ATG)n Simple_repeat Simple_repeat 3 40 0 200 149 21 0 chr15 46426377 46426424 -54954097 + GA-rich Low_complexity Low_complexity 3 50 0 374 256 82 87 chr15 46426427 46426547 -54953974 - MIR SINE MIR -13 249 129 1806 176 13 3 chr15 46426547 46426849 -54953672 + AluJb SINE Alu 1 305 -7 374 256 82 87 chr15 46426849 46426923 -54953598 - MIR SINE MIR -133 129 56 2120 188 27 11 chr15 46427884 46428326 -54952195 + L1MA3 LINE L1 5853 6301 -4 201 328 33 0 chr15 46428586 46428647 -54951874 + L2 LINE L2 3170 3232 -40 399 226 9 13 chr15 46429685 46429791 -54950730 + MIR SINE MIR 4 109 -99 731 273 22 17 chr15 46431972 46432203 -54948318 - MIR SINE MIR -24 238 7 466 292 60 0 chr15 46432248 46432416 -54948105 - MIR SINE MIR -8 254 77 1256 120 0 0 chr15 46432620 46432795 -54947726 + AluSg/x SINE Alu 137 311 -1 746 259 88 4 chr15 46434720 46434948 -54945573 + MER112 DNA MER1_type 8 254 -6 351 0 0 0 chr15 46435673 46435712 -54944809 + (TC)n Simple_repeat Simple_repeat 2 40 0 204 97 0 0 chr15 46435711 46435742 -54944779 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 184 272 136 19 chr15 46436015 46436118 -54944403 + MIR SINE MIR 34 148 -60 198 135 0 0 chr15 46436443 46436461 -54944060 + (TAA)n Simple_repeat Simple_repeat 3 20 -19 1757 136 47 14 chr15 46436461 46436740 -54943781 + AluJo SINE Alu 1 288 -24 198 135 0 0 chr15 46436740 46436758 -54943763 + (TAA)n Simple_repeat Simple_repeat 19 39 0 320 267 40 0 chr15 46436817 46436918 -54943603 - MIR SINE MIR -79 183 79 * 488 287 33 25 chr15 46436913 46437100 -54943421 + MIR SINE MIR 10 191 -32 1914 154 10 0 chr15 46437327 46437620 -54942901 - AluJb SINE Alu -16 296 1 229 333 0 0 chr15 46437641 46437722 -54942799 - MIR SINE MIR -68 194 114 344 290 109 44 chr15 46439019 46439202 -54941319 + MIR SINE MIR 15 209 -53 2410 71 0 10 chr15 46439813 46440109 -54940412 + AluY SINE Alu 1 293 -18 304 287 160 13 chr15 46440886 46440956 -54939565 + MER69A DNA AcHobo 6 64 -2462 2152 121 0 3 chr15 46440956 46441254 -54939267 - AluSg SINE Alu -13 297 1 304 287 160 13 chr15 46441254 46441333 -54939188 + MER69A DNA AcHobo 64 177 0 206 156 219 0 chr15 46441334 46441398 -54939123 + MIR SINE MIR 107 184 -78 300 250 56 28 chr15 46441580 46441688 -54938833 - MIR SINE MIR -70 192 82 890 114 0 50 chr15 46442432 46442572 -54937949 + FLAM_C SINE Alu 1 133 0 2526 61 3 0 chr15 46442647 46442943 -54937578 - AluSp SINE Alu -16 297 1 520 233 5 45 chr15 46443155 46443325 -54937196 + MIR SINE MIR 2 160 -48 2063 81 4 0 chr15 46444454 46444713 -54935808 + AluY SINE Alu 1 260 -51 190 284 54 40 chr15 46445344 46445418 -54935103 + L2 LINE L2 3238 3312 -1 257 213 0 0 chr15 46446043 46446090 -54934431 + L2 LINE L2 3265 3311 -2 405 222 62 211 chr15 46447405 46447571 -54932950 + L2 LINE L2 2035 2224 -1090 2228 119 0 0 chr15 46447571 46447873 -54932648 - AluSx SINE Alu -10 302 1 405 222 62 211 chr15 46447873 46448414 -54932107 + L2 LINE L2 2224 2637 -677 795 173 45 6 chr15 46448414 46448570 -54931951 - LTR35 LTR ERV1 0 618 457 2635 182 62 11 chr15 46448621 46449231 -54931290 + L1MB8 LINE L1 5428 6068 -110 1024 120 0 0 chr15 46449232 46449431 -54931090 - AluSg/x SINE Alu 0 336 138 671 186 7 0 chr15 46449431 46449571 -54930950 + L1MB7 LINE L1 6044 6184 0 1809 117 68 31 chr15 46449697 46450049 -54930472 + L1MA4 LINE L1 5925 6289 -11 1621 190 6 49 chr15 46450079 46450405 -54930116 - AluJb SINE Alu 0 312 1 345 310 107 57 chr15 46450422 46450703 -54929818 - L1MEd LINE L1 -4921 1198 904 700 310 90 72 chr15 46450833 46451411 -54929110 + L1ME3 LINE L1 4475 5074 -1072 529 134 52 0 chr15 46451411 46451508 -54929013 + L1MA10 LINE L1 6226 6327 -7 700 310 90 72 chr15 46451508 46451739 -54928782 + L1ME3 LINE L1 5074 5299 -847 2076 119 0 20 chr15 46451741 46452043 -54928478 + AluJb SINE Alu 1 296 -16 502 231 249 37 chr15 46452052 46452377 -54928144 - L1MC4a LINE L1 -1828 5980 5587 475 314 61 33 chr15 46452402 46452647 -54927874 - MIR SINE MIR -9 253 2 2411 93 0 6 chr15 46453091 46453404 -54927117 + AluSq SINE Alu 1 311 -2 415 276 142 46 chr15 46453516 46453707 -54926814 + L1ME3 LINE L1 5260 5431 -731 2308 98 3 0 chr15 46453707 46454003 -54926518 - AluSp SINE Alu -16 297 1 415 276 142 46 chr15 46454003 46454441 -54926080 + L1ME3 LINE L1 5431 5949 -213 2119 105 7 0 chr15 46455049 46455334 -54925187 + AluSx SINE Alu 1 287 -25 490 184 0 0 chr15 46456356 46456443 -54924078 - Tigger5 DNA MER2_type 0 2323 2237 307 200 0 0 chr15 46456453 46456508 -54924013 - Tigger5 DNA MER2_type -2268 55 1 22 70 0 0 chr15 46456713 46456756 -54923765 + AT_rich Low_complexity Low_complexity 1 43 0 365 189 160 19 chr15 46456926 46457032 -54923489 - MER105 DNA DNA -83 121 1 265 246 56 0 chr15 46460158 46460256 -54920265 - MIR SINE MIR -69 139 72 1977 134 40 0 chr15 46461401 46461700 -54918821 + AluJb SINE Alu 1 311 -1 2399 84 0 0 chr15 46462146 46462442 -54918079 - AluY SINE Alu -15 296 1 879 152 36 12 chr15 46462549 46462714 -54917807 + MER58A DNA MER1_type 48 216 -8 702 182 0 16 chr15 46462750 46462871 -54917650 + AluJ SINE Alu 2 120 -192 539 179 0 0 chr15 46462863 46462947 -54917574 - AluS SINE Alu -228 84 1 * 1263 126 5 21 chr15 46462950 46463136 -54917385 + AluJ SINE Alu 105 288 -20 183 114 0 0 chr15 46463136 46463171 -54917350 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1671 172 44 27 chr15 46463210 46463507 -54917014 + AluJo SINE Alu 3 304 -8 2043 139 14 0 chr15 46463704 46463998 -54916523 + AluSx SINE Alu 1 298 -14 2197 103 27 3 chr15 46464451 46464743 -54915778 - AluSx SINE Alu -13 299 1 691 204 83 6 chr15 46464854 46465011 -54915510 - MER20 DNA MER1_type -4 215 47 253 302 219 0 chr15 46465236 46465332 -54915189 - L3 LINE CR1 -80 1497 1381 21 71 0 0 chr15 46465614 46465656 -54914865 + AT_rich Low_complexity Low_complexity 1 42 0 355 320 51 46 chr15 46466134 46466309 -54914212 - MIR SINE MIR -62 200 25 221 167 0 0 chr15 46466810 46466852 -54913669 - L2 LINE L2 0 3313 3272 25 31 0 0 chr15 46467330 46467362 -54913159 + AT_rich Low_complexity Low_complexity 1 32 0 340 229 125 42 chr15 46467418 46467658 -54912863 - L1MC4a LINE L1 -1773 6035 5776 1431 141 8 8 chr15 46467760 46468022 -54912499 - Tigger6 DNA MER2_type -1 1596 1335 1726 113 41 38 chr15 46468278 46468598 -54911923 + MLT1B LTR MaLR 1 321 -69 1816 166 7 20 chr15 46468976 46469277 -54911244 - AluJo SINE Alu -5 307 11 1234 194 0 5 chr15 46469756 46469972 -54910549 - AluJo SINE Alu -11 301 87 24 0 0 0 chr15 46470357 46470381 -54910140 + AT_rich Low_complexity Low_complexity 1 24 0 1739 181 13 19 chr15 46470692 46471001 -54909520 - AluJo SINE Alu -5 307 1 2065 141 0 3 chr15 46471239 46471537 -54908984 + AluSx SINE Alu 1 297 -15 475 194 194 24 chr15 46471878 46472089 -54908432 + L1ME3A LINE L1 5678 5924 -240 300 253 0 13 chr15 46472137 46472212 -54908309 + L1ME3A LINE L1 6089 6162 -8 696 264 91 46 chr15 46472212 46472254 -54908267 + L1MC4 LINE L1 6993 7032 -1010 2192 92 7 36 chr15 46472254 46472557 -54907964 - AluSg SINE Alu -16 294 1 696 264 91 46 chr15 46472557 46472581 -54907940 + L1MC4 LINE L1 7032 7053 -989 1953 150 7 0 chr15 46472581 46472867 -54907654 + AluJb SINE Alu 13 300 -12 696 264 91 46 chr15 46472867 46472984 -54907537 + L1MC4 LINE L1 7053 7163 -879 2225 58 69 3 chr15 46472984 46473275 -54907246 + AluY SINE Alu 1 310 -1 696 264 91 46 chr15 46473275 46473571 -54906950 + L1MC4 LINE L1 7163 7496 -546 427 289 75 36 chr15 46473575 46473769 -54906752 + L1MC4 LINE L1 7709 7921 -121 246 62 0 0 chr15 46473769 46473801 -54906720 + (TG)n Simple_repeat Simple_repeat 2 33 0 427 289 75 36 chr15 46473801 46473911 -54906610 + L1MC4 LINE L1 7921 8025 -17 2145 119 3 3 chr15 46475166 46475468 -54905053 + AluSc SINE Alu 1 302 -7 440 302 93 33 chr15 46476211 46476426 -54904095 + L2 LINE L2 2827 3054 -218 255 314 39 98 chr15 46477465 46477618 -54902903 + MIR SINE MIR 4 147 -115 2351 109 0 0 chr15 46477831 46478135 -54902386 - AluSx SINE Alu -4 308 5 2160 108 0 10 chr15 46478144 46478441 -54902080 - AluSg SINE Alu -15 295 2 292 98 0 158 chr15 46478460 46478491 -54902030 + HsTC2 DNA Tc2 231 243 -1655 2000 117 29 4 chr15 46478491 46478772 -54901749 + AluSg SINE Alu 1 288 -22 292 98 0 158 chr15 46478772 46478822 -54901699 + HsTC2 DNA Tc2 243 299 -1599 598 240 142 71 chr15 46478853 46479008 -54901513 + HsTC2 DNA Tc2 531 674 -1224 1839 183 20 0 chr15 46479008 46479314 -54901207 - AluJb SINE Alu 0 312 1 598 240 142 71 chr15 46479314 46479495 -54901026 + HsTC2 DNA Tc2 674 891 -1007 2168 138 3 0 chr15 46479599 46479910 -54900611 + AluSx SINE Alu 1 312 0 358 248 26 26 chr15 46479964 46480081 -54900440 + MIR SINE MIR 146 262 0 2333 79 3 0 chr15 46480336 46480627 -54899894 - AluSp SINE Alu -21 292 1 1719 175 37 14 chr15 46480738 46481035 -54899486 - AluJb SINE Alu -8 304 1 2339 108 0 6 chr15 46481359 46481673 -54898848 - AluSx SINE Alu 0 312 1 737 179 0 8 chr15 46482575 46482709 -54897812 + FLAM_A SINE Alu 1 133 0 22 35 0 0 chr15 46483188 46483217 -54897304 + AT_rich Low_complexity Low_complexity 1 29 0 2182 126 0 3 chr15 46483289 46483598 -54896923 + AluSx SINE Alu 1 308 -4 898 124 31 0 chr15 46484195 46484324 -54896197 + AluJb SINE Alu 1 133 -179 2359 95 13 0 chr15 46484330 46484635 -54895886 + AluSg SINE Alu 1 309 -1 2419 92 0 3 chr15 46485357 46485663 -54894858 + AluSx SINE Alu 1 305 -7 183 42 0 0 chr15 46486202 46486226 -54894295 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 212 59 29 0 chr15 46486248 46486282 -54894239 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 943 196 0 0 chr15 46486286 46486444 -54894077 - FAM SINE Alu -17 158 1 1046 180 28 0 chr15 46486712 46486890 -54893631 - AluJo SINE Alu -14 298 116 1745 171 20 0 chr15 46486899 46487197 -54893324 - AluJo SINE Alu -8 304 1 339 285 6 95 chr15 46487218 46487276 -54893245 - L1ME2 LINE L1 -83 6064 6002 2217 97 13 0 chr15 46487276 46487574 -54892947 + AluSq SINE Alu 1 302 -11 339 285 6 95 chr15 46487574 46487673 -54892848 - L1ME2 LINE L1 -145 6002 5921 1505 264 75 29 chr15 46487698 46488362 -54892159 - L1ME2 LINE L1 -219 5934 5240 1925 100 4 4 chr15 46488386 46488645 -54891876 + AluSg SINE Alu 37 295 -15 726 275 40 14 chr15 46488647 46488998 -54891523 - L1ME2 LINE L1 -4863 1256 971 484 316 58 11 chr15 46489075 46489265 -54891256 - L1ME2 LINE L1 -5401 718 520 593 205 0 79 chr15 46489711 46489901 -54890620 + L1MC5 LINE L1 7688 7862 -99 21 57 0 0 chr15 46489917 46489952 -54890569 + AT_rich Low_complexity Low_complexity 1 35 0 2227 121 0 0 chr15 46491015 46491321 -54889200 - AluSx SINE Alu -6 306 1 2001 135 10 0 chr15 46491625 46491921 -54888600 + AluSx SINE Alu 1 299 -13 1167 121 145 5 chr15 46492416 46492623 -54887898 + MER46A DNA MER2_type 1 236 0 894 138 0 0 chr15 46492991 46493121 -54887400 + AluSq/x SINE Alu 1 130 -182 281 70 47 0 chr15 46493121 46493164 -54887357 + Alu SINE Alu 249 293 -8 410 232 22 22 chr15 46493719 46493857 -54886664 - L1M4 LINE L1 -771 5375 5238 275 286 60 30 chr15 46494304 46494472 -54886049 + L1ME LINE L1 5524 5696 -425 253 0 0 0 chr15 46495099 46495127 -54885394 + (TTTA)n Simple_repeat Simple_repeat 2 176 0 2484 39 0 0 chr15 46495127 46495411 -54885110 - AluY SINE Alu -27 284 1 2262 237 126 16 chr15 46495449 46496060 -54884461 + MER20B DNA MER1_type 1 702 -81 1886 177 0 0 chr15 46496060 46496359 -54884162 - AluJb SINE Alu -12 300 2 2262 237 126 16 chr15 46496359 46496452 -54884069 + MER20B DNA MER1_type 702 783 0 1789 113 67 18 chr15 46496721 46497004 -54883517 + AluSx SINE Alu 1 297 -15 302 238 238 12 chr15 46497544 46497716 -54882805 + L1ME LINE L1 5595 5805 -316 501 191 153 25 chr15 46497721 46497962 -54882559 - L1MC5 LINE L1 -32 7929 7658 2332 91 3 28 chr15 46498042 46498361 -54882160 + AluSq SINE Alu 1 311 -2 24 53 0 0 chr15 46498451 46498489 -54882032 + AT_rich Low_complexity Low_complexity 1 38 0 2535 54 0 0 chr15 46498556 46498853 -54881668 + AluY SINE Alu 1 297 -14 1289 249 111 70 chr15 46499359 46500196 -54880325 + HAL1 LINE L1 1624 2494 -13 1515 163 16 8 chr15 46500213 46500471 -54880050 - L1PB4 LINE L1 -2 6154 5895 2234 88 0 7 chr15 46500484 46500791 -54879730 + AluSg SINE Alu 1 305 0 26 0 0 0 chr15 46500998 46501024 -54879497 + AT_rich Low_complexity Low_complexity 1 26 0 2301 101 0 0 chr15 46501092 46501388 -54879133 - AluSp SINE Alu -9 304 9 2441 150 65 96 chr15 46501473 46501994 -54878527 + MLT1D LTR MaLR 1 505 0 411 234 107 42 chr15 46502043 46502253 -54878268 - L1P3 LINE L1 -436 5736 5500 1243 114 0 0 chr15 46502481 46502647 -54877874 + AluSg/x SINE Alu 134 299 -13 1833 150 28 0 chr15 46503200 46503486 -54877035 + AluSx SINE Alu 1 294 -18 1004 162 50 0 chr15 46503492 46503671 -54876850 + MER33 DNA MER1_type 7 194 -130 1808 168 0 10 chr15 46503673 46503964 -54876557 + AluJb SINE Alu 1 288 -24 575 206 0 47 chr15 46504002 46504109 -54876412 + AluJo SINE Alu 126 227 -85 457 250 0 0 chr15 46504415 46504511 -54876010 + MIR SINE MIR 93 188 -74 1337 167 4 49 chr15 46504534 46504798 -54875723 + AluJo SINE Alu 29 280 -32 45 16 0 16 chr15 46504798 46504849 -54875672 + AT_rich Low_complexity Low_complexity 1 52 -10 1810 172 7 10 chr15 46504849 46505146 -54875375 + AluJb SINE Alu 1 296 -16 45 16 0 16 chr15 46505146 46505157 -54875364 + AT_rich Low_complexity Low_complexity 52 62 0 215 222 0 0 chr15 46505173 46505218 -54875303 + MIR SINE MIR 218 262 0 317 311 50 17 chr15 46505273 46505392 -54875129 - MIR SINE MIR -79 183 61 2475 78 0 7 chr15 46505469 46505775 -54874746 - AluSx SINE Alu -8 304 1 302 287 82 33 chr15 46506245 46506367 -54874154 + MIR SINE MIR 19 146 -62 2500 72 0 0 chr15 46506455 46506759 -54873762 - AluY SINE Alu -7 304 1 2243 107 17 0 chr15 46506832 46507131 -54873390 - AluSx SINE Alu -8 304 1 1580 184 6 44 chr15 46507161 46507305 -54873216 + AluJb SINE Alu 1 149 -163 2308 93 0 13 chr15 46507305 46507615 -54872906 + AluSx SINE Alu 1 306 -6 1580 184 6 44 chr15 46507615 46507791 -54872730 + AluJb SINE Alu 149 309 -3 235 314 0 0 chr15 46508415 46508466 -54872055 - L2 LINE L2 -88 3184 3134 1961 264 111 71 chr15 46509019 46510435 -54870086 - L1MC4a LINE L1 -393 7415 5927 1957 152 10 3 chr15 46510435 46510732 -54869789 - AluJb SINE Alu -13 299 1 1961 264 111 71 chr15 46510732 46510899 -54869622 - L1MC4a LINE L1 -1881 5927 5768 500 292 16 52 chr15 46511344 46511594 -54868927 - L2 LINE L2 -104 3209 2969 451 307 85 64 chr15 46511609 46511892 -54868629 + LTR67 LTR ERVL 12 300 -257 334 216 27 0 chr15 46511893 46511967 -54868554 + LTR67 LTR ERVL 478 553 -4 553 375 68 18 chr15 46512021 46512301 -54868220 - L2 LINE L2 -454 2860 2567 391 275 52 64 chr15 46512307 46512391 -54868130 - L1MEd LINE L1 -4123 2273 2189 2316 122 0 0 chr15 46512391 46512703 -54867818 - AluSx SINE Alu 0 312 1 391 275 52 64 chr15 46512703 46512851 -54867670 - L1MEd LINE L1 -4207 2189 2044 885 251 128 26 chr15 46512889 46513272 -54867249 + L1MC5 LINE L1 7492 7913 -48 494 175 84 84 chr15 46513612 46513712 -54866809 - MER3 DNA MER1_type -19 143 41 1287 173 30 133 chr15 46513712 46514042 -54866479 + AluJo SINE Alu 1 296 -6 494 175 84 84 chr15 46514042 46514084 -54866437 - MER3 DNA MER1_type -120 42 1 1065 269 80 53 chr15 46514098 46514275 -54866246 - L1MEd LINE L1 -755 1662 1491 2338 109 0 3 chr15 46514275 46514587 -54865934 + AluSq SINE Alu 1 311 -2 1065 269 80 53 chr15 46514587 46515026 -54865495 - L1MEd LINE L1 -926 1491 1065 1466 173 8 8 chr15 46515026 46515269 -54865252 - AluJb SINE Alu 0 312 70 1065 269 80 53 chr15 46515269 46515625 -54864896 - L1MEd LINE L1 -1352 1065 487 2339 102 3 0 chr15 46516145 46516449 -54864072 + AluSg SINE Alu 1 305 -5 1106 133 78 66 chr15 46516516 46516597 -54863924 + Tigger2 DNA MER2_type 1 80 -2638 2137 122 0 10 chr15 46516597 46516901 -54863620 + AluSx SINE Alu 1 301 -11 1106 133 78 66 chr15 46516901 46516942 -54863579 + Tigger2 DNA MER2_type 80 119 -2599 1562 154 82 43 chr15 46516942 46517221 -54863300 + AluJo SINE Alu 3 292 -10 1106 133 78 66 chr15 46517221 46517353 -54863168 + Tigger2 DNA MER2_type 119 259 -2459 232 200 0 0 chr15 46517380 46517425 -54863096 + Alu SINE Alu 176 220 -82 1085 157 0 0 chr15 46517426 46517585 -54862936 + AluJb SINE Alu 136 294 -18 522 83 0 0 chr15 46517586 46517658 -54862863 + (TA)n Simple_repeat Simple_repeat 1 72 0 1747 158 0 29 chr15 46518007 46518318 -54862203 + AluJb SINE Alu 1 302 -10 2330 106 0 0 chr15 46518565 46518868 -54861653 - AluSx SINE Alu -9 303 1 1773 140 15 0 chr15 46519033 46519298 -54861223 - AluJb SINE Alu -43 269 1 1762 146 32 65 chr15 46519417 46519549 -54860972 + AluSx SINE Alu 1 136 -176 1890 144 3 50 chr15 46519549 46519868 -54860653 + AluSx SINE Alu 1 304 -8 1762 146 32 65 chr15 46519868 46520044 -54860477 + AluSx SINE Alu 136 299 -13 1790 191 25 14 chr15 46520493 46520849 -54859672 + MLT1A1 LTR MaLR 6 365 0 446 203 62 31 chr15 46521091 46521219 -54859302 - L1MC4a LINE L1 -1888 5920 5789 350 258 33 17 chr15 46521215 46521335 -54859186 - L1P4 LINE L1 -725 5440 5319 * 27 62 0 0 chr15 46521511 46521559 -54858962 + AT_rich Low_complexity Low_complexity 1 48 0 2322 84 7 3 chr15 46521708 46522006 -54858515 + AluSp SINE Alu 1 299 -14 251 336 88 35 chr15 46522409 46522635 -54857886 + L2 LINE L2 2820 3057 -215 409 292 0 0 chr15 46523058 46523147 -54857374 - MER112 DNA MER1_type -1 259 171 2443 39 4 0 chr15 46523351 46523654 -54856867 - AluY SINE Alu 0 305 2 215 127 36 18 chr15 46523689 46523744 -54856777 + (CATCT)n Simple_repeat Simple_repeat 5 60 0 461 250 59 166 chr15 46523752 46524004 -54856517 + L2 LINE L2 2819 2990 -323 2282 90 0 3 chr15 46524004 46524293 -54856228 - AluSc SINE Alu -21 288 1 461 250 59 166 chr15 46524293 46524552 -54855969 + L2 LINE L2 2990 3275 -38 2185 98 10 0 chr15 46525029 46525324 -54855197 + AluSp SINE Alu 15 312 -1 206 135 27 0 chr15 46525486 46525523 -54854998 - L2 LINE L2 -1061 2253 2216 1281 151 49 18 chr15 46525808 46526033 -54854488 + AluJb SINE Alu 67 298 -14 2462 64 0 0 chr15 46526167 46526465 -54854056 - AluY SINE Alu -11 300 3 504 179 17 14 chr15 46526978 46527100 -54853421 - MLT1A1 LTR MaLR -1 380 267 311 136 0 17 chr15 46527048 46527107 -54853414 - FLAM_A SINE Alu 0 133 76 * 1399 181 38 41 chr15 46527110 46527247 -54853274 - MLT1A1 LTR MaLR -73 292 156 2223 101 0 7 chr15 46527247 46527544 -54852977 - AluSg SINE Alu -15 295 1 1399 181 38 41 chr15 46527544 46527699 -54852822 - MLT1A1 LTR MaLR -209 156 1 36 0 0 0 chr15 46527845 46527881 -54852640 + AT_rich Low_complexity Low_complexity 1 36 0 799 124 0 0 chr15 46527881 46527986 -54852535 - U6 snRNA snRNA -2 105 1 2005 129 45 0 chr15 46528230 46528516 -54852005 + AluSx SINE Alu 1 299 -13 1979 128 14 10 chr15 46528711 46529007 -54851514 - AluSx SINE Alu -15 297 1 2254 104 0 0 chr15 46529038 46529327 -54851194 + AluSc SINE Alu 1 289 -20 711 220 147 16 chr15 46529508 46529699 -54850822 + MER46C DNA MER2_type 12 227 -111 799 231 25 20 chr15 46529792 46529995 -54850526 - MIR SINE MIR -1 261 58 361 204 124 0 chr15 46530292 46530405 -54850116 - L1ME4a LINE L1 -21 6100 5974 307 217 133 56 chr15 46530446 46530626 -54849895 - L1ME4a LINE L1 -223 5898 5705 646 276 51 28 chr15 46530627 46530844 -54849677 + MIR SINE MIR 31 252 -10 750 282 165 12 chr15 46531091 46531431 -54849090 - L3 LINE CR1 -9 1568 1177 194 137 137 78 chr15 46531558 46531609 -54848912 + MER5A DNA MER1_type 130 183 -6 248 286 10 51 chr15 46531615 46531713 -54848808 - L3 LINE CR1 -464 1113 1020 1641 165 14 24 chr15 46531756 46532047 -54848474 + AluJb SINE Alu 5 292 -20 413 157 0 12 chr15 46532066 46532149 -54848372 + GA-rich Low_complexity Low_complexity 4 85 0 2207 113 0 3 chr15 46532793 46533093 -54847428 - AluSq SINE Alu -14 299 1 642 145 153 8 chr15 46533866 46533997 -54846524 + Charlie1b DNA MER1_type 130 279 -244 22 70 0 0 chr15 46535236 46535279 -54845242 + GC_rich Low_complexity Low_complexity 1 43 0 305 321 197 21 chr15 46537165 46537694 -54842827 - L2 LINE L2 -410 2904 2283 * 508 294 158 49 chr15 46537692 46537869 -54842652 - L2 LINE L2 -4 3309 3153 2034 112 18 0 chr15 46537869 46538155 -54842366 + AluSx SINE Alu 1 291 -21 508 294 158 49 chr15 46538155 46538406 -54842115 - L2 LINE L2 -160 3153 2834 2523 47 0 31 chr15 46538471 46538788 -54841733 + AluY SINE Alu 1 307 -4 234 295 221 0 chr15 46538798 46538920 -54841601 - L2 LINE L2 -727 2587 2439 1079 136 182 34 chr15 46538926 46539190 -54841331 - Charlie5 DNA MER1_type -74 2538 2236 268 246 97 18 chr15 46539191 46539305 -54841216 - Charlie5 DNA MER1_type -2489 123 1 253 324 47 41 chr15 46539308 46539478 -54841043 - L2 LINE L2 -449 2865 2695 725 189 120 47 chr15 46539575 46539759 -54840762 + MER5C DNA MER1_type 1 170 -154 2235 112 0 3 chr15 46539759 46540063 -54840458 - AluSc SINE Alu -6 303 1 2337 99 6 6 chr15 46540065 46540378 -54840143 - AluSp SINE Alu 0 313 1 725 189 120 47 chr15 46540378 46540423 -54840098 + MER5C DNA MER1_type 170 250 -74 727 286 33 6 chr15 46540596 46540817 -54839704 - MIR SINE MIR -1 261 36 1784 146 11 14 chr15 46541046 46541326 -54839195 - AluJb SINE Alu -33 279 1 876 199 51 93 chr15 46541368 46541434 -54839087 + L1ME LINE L1 5258 5325 -855 2232 116 7 0 chr15 46541434 46541735 -54838786 + AluSx SINE Alu 1 303 -9 876 199 51 93 chr15 46541735 46542042 -54838479 + L1ME LINE L1 5325 5604 -576 1306 163 218 23 chr15 46542175 46542482 -54838039 + MSTB1 LTR MaLR 1 367 -65 249 361 63 11 chr15 46543099 46543290 -54837231 - L2 LINE L2 -960 2354 2154 202 252 153 27 chr15 46543329 46543440 -54837081 - MIR SINE MIR -6 256 132 196 163 0 23 chr15 46543570 46543613 -54836908 - L2 LINE L2 -1356 1958 1917 600 208 33 33 chr15 46543736 46543847 -54836674 + MER113 DNA MER1_type? 192 302 -219 1751 180 3 3 chr15 46543847 46544142 -54836379 - AluJb SINE Alu -17 295 1 600 208 33 33 chr15 46544142 46544257 -54836264 + MER113 DNA MER1_type? 302 521 0 23 152 0 0 chr15 46545119 46545152 -54835369 + GC_rich Low_complexity Low_complexity 1 33 0 777 93 0 34 chr15 46545182 46545300 -54835221 - AluY SINE Alu -196 115 2 809 162 0 74 chr15 46545899 46546047 -54834474 + FLAM_C SINE Alu 2 138 -5 210 143 0 0 chr15 46546141 46546176 -54834345 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 269 250 23 0 chr15 46546176 46546264 -54834257 + L1MC4 LINE L1 6614 6703 -1339 1834 144 3 39 chr15 46546462 46546767 -54833754 - AluSx SINE Alu -18 294 1 1722 166 32 14 chr15 46547746 46548029 -54832492 - AluJb SINE Alu -24 288 1 856 182 182 84 chr15 46548218 46548526 -54831995 + MSTD LTR MaLR 28 396 0 186 43 0 0 chr15 46549196 46549219 -54831302 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 460 185 160 42 chr15 46549328 46549341 -54831180 - MER3 DNA MER1_type -29 133 123 2085 115 28 0 chr15 46549341 46549627 -54830894 + AluSx SINE Alu 1 294 -18 460 185 160 42 chr15 46549627 46549732 -54830789 - MER3 DNA MER1_type -39 123 1 180 97 0 0 chr15 46551704 46551735 -54828786 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 975 158 25 116 chr15 46552394 46552537 -54827984 + AluJo SINE Alu 1 107 -205 2236 103 3 28 chr15 46552537 46552857 -54827664 + AluSx SINE Alu 1 312 0 975 158 25 116 chr15 46552857 46552998 -54827523 + AluJo SINE Alu 107 259 -53 1160 190 87 30 chr15 46553077 46553377 -54827144 + L1M4 LINE L1 4918 5234 -912 621 239 8 0 chr15 46553393 46553510 -54827011 - FLAM_A SINE Alu -14 119 2 242 273 18 0 chr15 46553551 46553606 -54826915 + L2 LINE L2 3198 3253 -19 189 0 0 0 chr15 46554026 46554047 -54826474 + (TC)n Simple_repeat Simple_repeat 2 22 0 1045 95 89 68 chr15 46554212 46554271 -54826250 - L1PB1 LINE L1 0 6151 6095 2057 122 31 0 chr15 46554271 46554559 -54825962 - AluSx SINE Alu -15 297 1 1045 95 89 68 chr15 46554559 46554689 -54825832 - L1PB1 LINE L1 -56 6095 5958 1783 156 0 20 chr15 46554903 46555205 -54825316 - AluJb SINE Alu -12 300 5 276 185 0 37 chr15 46555218 46555272 -54825249 - FLAM SINE Alu -9 124 73 1918 167 62 0 chr15 46555348 46555671 -54824850 - MER2 DNA MER2_type -1 343 1 562 175 113 127 chr15 46555671 46555916 -54824605 + L1MB7 LINE L1 5922 6164 -20 2137 68 60 18 chr15 46555947 46556228 -54824293 - AluY SINE Alu -17 294 2 3360 134 47 2 chr15 46556262 46556791 -54823730 - L1MB2 LINE L1 -7 6164 5612 2209 111 0 0 chr15 46557599 46557897 -54822624 - AluY SINE Alu -13 298 1 284 295 0 60 chr15 46559231 46559414 -54821107 + T-rich Low_complexity Low_complexity 4 175 0 * 316 335 0 19 chr15 46559282 46559440 -54821081 + CT-rich Low_complexity Low_complexity 2 156 0 363 285 217 35 chr15 46560123 46560492 -54820029 + L2 LINE L2 2398 2833 -481 313 374 10 87 chr15 46560606 46560801 -54819720 + L2 LINE L2 3008 3187 -85 2171 121 3 7 chr15 46561113 46561420 -54819101 + AluJb SINE Alu 2 307 -5 209 336 142 26 chr15 46561630 46561980 -54818541 + L2 LINE L2 2698 3090 -182 2132 120 10 0 chr15 46562100 46562400 -54818121 - AluSx SINE Alu -9 303 1 2115 124 7 3 chr15 46563317 46563615 -54816906 - AluSx SINE Alu -13 299 1 1662 162 14 7 chr15 46564745 46565023 -54815498 - AluJb SINE Alu -32 280 1 370 269 108 54 chr15 46565064 46565231 -54815290 - L1ME LINE L1 -369 5752 5577 23 0 0 0 chr15 46565247 46565270 -54815251 + AT_rich Low_complexity Low_complexity 1 23 0 2365 73 0 3 chr15 46565270 46565557 -54814964 + AluSc SINE Alu 1 286 -23 248 289 16 58 chr15 46565557 46565678 -54814843 - AluJo/FLAM SINE Alu -170 132 17 1847 144 10 7 chr15 46566211 46566503 -54814018 + AluSq SINE Alu 1 293 -20 261 207 0 0 chr15 46566508 46566566 -54813955 + L1MC4 LINE L1 6646 6703 -1339 * 382 269 121 33 chr15 46566547 46566977 -54813544 - L1MC/D LINE L1 -500 5670 5189 2094 116 3 0 chr15 46566994 46567286 -54813235 - AluSq SINE Alu -20 293 1 291 335 48 5 chr15 46567348 46567554 -54812967 - L1MC/D LINE L1 -1092 5054 4840 283 205 0 77 chr15 46567555 46567633 -54812888 - MER116 DNA Mariner 0 80 9 266 207 62 0 chr15 46567730 46567802 -54812719 - L1ME LINE L1 -787 5546 5471 1290 184 86 8 chr15 46567810 46567930 -54812591 + AluJb SINE Alu 1 110 -202 180 0 0 0 chr15 46567930 46567950 -54812571 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1290 184 86 8 chr15 46567950 46568096 -54812425 + AluJb SINE Alu 110 288 -24 1119 134 0 6 chr15 46568105 46568264 -54812257 + AluSg/x SINE Alu 129 287 -21 183 42 0 0 chr15 46568264 46568288 -54812233 + (TTAAA)n Simple_repeat Simple_repeat 2 25 0 1805 143 13 29 chr15 46568315 46568630 -54811891 + AluJo SINE Alu 2 311 -1 1604 171 8 0 chr15 46568656 46568919 -54811602 - MER2 DNA MER2_type -80 265 1 2084 124 3 0 chr15 46569377 46569660 -54810861 - AluSp SINE Alu -29 284 1 2350 73 0 7 chr15 46569673 46569975 -54810546 - AluY SINE Alu -11 300 1 2307 97 0 0 chr15 46570088 46570386 -54810135 + AluSx SINE Alu 1 298 -14 861 219 142 5 chr15 46571081 46571300 -54809221 - MIR SINE MIR -6 256 8 2377 78 17 0 chr15 46571391 46571686 -54808835 + AluSx SINE Alu 1 300 -12 693 246 143 21 chr15 46571686 46572155 -54808366 + L2 LINE L2 2775 3305 -8 2247 100 3 3 chr15 46572156 46572457 -54808064 + AluSx SINE Alu 1 301 -11 377 271 63 5 chr15 46572903 46573110 -54807411 + MER113 DNA MER1_type? 1 219 -302 1461 237 46 20 chr15 46573113 46573506 -54807015 + L1ME3A LINE L1 5768 6170 0 1831 65 4 4 chr15 46573508 46573740 -54806781 + L1PA14 LINE L1 5928 6159 -2 2115 124 0 23 chr15 46573746 46574053 -54806468 + AluSx SINE Alu 1 300 -12 2168 126 0 3 chr15 46574053 46574408 -54806113 + AluSx SINE Alu 1 354 0 1840 179 3 3 chr15 46574432 46574733 -54805788 + AluJb SINE Alu 1 301 -11 790 217 145 4 chr15 46574773 46575008 -54805513 + MER113 DNA MER1_type? 250 517 -4 934 87 0 0 chr15 46575679 46575806 -54804715 - AluY SINE Alu -11 300 174 492 189 82 113 chr15 46576177 46576336 -54804185 + MER58B DNA MER1_type 182 335 -6 479 90 154 0 chr15 46576923 46577001 -54803520 - 5S rRNA rRNA -31 90 1 1860 145 14 3 chr15 46577134 46577416 -54803105 - AluJb SINE Alu -27 285 1 917 240 14 14 chr15 46577552 46577769 -54802752 - MIR SINE MIR -44 218 2 1825 147 23 42 chr15 46578168 46578351 -54802170 - AluJb SINE Alu -11 301 125 2192 116 3 0 chr15 46578351 46578645 -54801876 + AluSp SINE Alu 1 295 -18 1825 147 23 42 chr15 46578645 46578768 -54801753 - AluJb SINE Alu -187 125 1 2193 132 0 7 chr15 46579034 46579344 -54801177 + AluSx SINE Alu 1 308 -4 2506 80 0 0 chr15 46579345 46579646 -54800875 + AluSq SINE Alu 1 301 -12 210 315 14 0 chr15 46579785 46579858 -54800663 - MIR3 SINE MIR -30 178 105 2151 127 0 3 chr15 46580041 46580341 -54800180 - AluSx SINE Alu -13 299 1 626 266 86 26 chr15 46581337 46581798 -54798723 - L1ME LINE L1 -5511 559 2 2067 116 0 13 chr15 46581949 46582250 -54798271 + AluSg SINE Alu 1 297 -13 2189 126 7 0 chr15 46582263 46582573 -54797948 + AluSx SINE Alu 1 312 0 2242 115 0 7 chr15 46582934 46583238 -54797283 + AluSx SINE Alu 3 304 -8 2215 126 7 0 chr15 46583239 46583549 -54796972 + AluSx SINE Alu 1 312 0 1768 158 10 7 chr15 46583812 46584109 -54796412 - AluSx SINE Alu -14 298 1 732 200 0 0 chr15 46584371 46584491 -54796030 + AluJb SINE Alu 178 297 -15 312 126 207 11 chr15 46584491 46584578 -54795943 + L1ME LINE L1 1319 1422 -5108 1244 161 29 0 chr15 46584578 46584783 -54795738 + AluJo SINE Alu 84 294 -18 2150 123 3 13 chr15 46584815 46585124 -54795397 + AluSx SINE Alu 1 306 -6 206 62 31 0 chr15 46585157 46585189 -54795332 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 394 197 34 51 chr15 46585284 46585401 -54795120 + L1ME LINE L1 1806 1920 -4620 2099 121 10 7 chr15 46585406 46585712 -54794809 + AluSx SINE Alu 1 307 -5 908 181 165 42 chr15 46585712 46586021 -54794500 + L1ME LINE L1 2767 3113 -3427 905 216 114 13 chr15 46586189 46586425 -54794096 - MIR SINE MIR 0 262 3 1968 135 0 10 chr15 46587617 46587914 -54792607 - AluSx SINE Alu -18 294 1 2210 116 3 3 chr15 46588269 46588580 -54791941 + AluSp SINE Alu 1 311 -2 2076 79 10 14 chr15 46588849 46589140 -54791381 + AluY SINE Alu 5 294 -17 2264 81 0 17 chr15 46589328 46589623 -54790898 + AluY SINE Alu 1 290 -21 26 74 0 0 chr15 46589664 46589718 -54790803 + AT_rich Low_complexity Low_complexity 1 54 0 2025 114 7 10 chr15 46590525 46590824 -54789697 + AluSx SINE Alu 1 298 -14 1222 314 0 119 chr15 46591303 46591647 -54788874 + AluSq SINE Alu 1 303 0 1992 148 0 0 chr15 46591659 46591957 -54788564 + AluSx SINE Alu 1 298 -14 854 203 0 0 chr15 46592270 46592423 -54788098 + AluJb SINE Alu 137 289 -23 2294 93 0 23 chr15 46593326 46593628 -54786893 - AluSg SINE Alu -13 297 3 2494 85 0 0 chr15 46593630 46593936 -54786585 - AluSx SINE Alu -6 306 1 1773 175 0 7 chr15 46594144 46594441 -54786080 + AluJb SINE Alu 3 297 -15 2229 124 0 7 chr15 46594795 46595102 -54785419 + AluSx SINE Alu 1 305 -7 2267 112 0 0 chr15 46595418 46595722 -54784799 + AluSg SINE Alu 1 304 -6 1982 110 7 39 chr15 46595853 46596162 -54784359 + AluSg SINE Alu 1 299 -11 2014 106 19 53 chr15 46596416 46596738 -54783783 - AluSx SINE Alu 0 312 2 2289 102 10 0 chr15 46596926 46597230 -54783291 + AluSp SINE Alu 1 307 -6 3749 125 2 33 chr15 46597939 46598184 -54782337 + MER1A DNA MER1_type 1 252 -2448 2171 112 7 0 chr15 46598184 46598479 -54782042 - AluSq SINE Alu -16 297 1 3749 125 2 33 chr15 46598479 46598777 -54781744 + MER1A DNA MER1_type 252 527 0 1645 133 31 8 chr15 46599104 46599360 -54781161 - AluSx SINE Alu -16 296 35 2237 92 0 3 chr15 46599370 46599693 -54780828 - AluSq SINE Alu 0 322 1 1856 164 3 7 chr15 46600696 46600994 -54779527 - AluSx SINE Alu -15 297 1 21 0 0 0 chr15 46601176 46601197 -54779324 + AT_rich Low_complexity Low_complexity 1 21 0 1541 122 14 0 chr15 46602321 46602542 -54777979 + AluSg/x SINE Alu 83 306 -4 1196 108 12 0 chr15 46602542 46602708 -54777813 + AluSq SINE Alu 134 301 -12 183 383 41 20 chr15 46603159 46603355 -54777166 - L2 LINE L2 -672 2642 2443 1600 161 84 13 chr15 46603670 46603969 -54776552 + MER2 DNA MER2_type 2 321 -24 1984 137 0 14 chr15 46604287 46604572 -54775949 + AluSx SINE Alu 1 281 -31 204 40 0 0 chr15 46604575 46604600 -54775921 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1868 115 77 0 chr15 46604804 46605065 -54775456 + AluSx SINE Alu 1 281 -31 306 0 0 0 chr15 46605068 46605102 -54775419 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2503 70 0 0 chr15 46605302 46605603 -54774918 + AluY SINE Alu 1 301 -10 395 345 58 54 chr15 46605910 46606133 -54774388 + L2 LINE L2 3023 3246 -26 1760 160 0 47 chr15 46609416 46609716 -54770805 + AluJb SINE Alu 1 286 -26 1560 224 43 0 chr15 46609990 46610316 -54770205 + MER58B DNA MER1_type 2 341 0 1927 85 8 15 chr15 46610351 46610610 -54769911 - AluY SINE Alu -19 292 36 2205 115 0 3 chr15 46610612 46610908 -54769613 - AluSx SINE Alu -17 295 1 670 250 0 0 chr15 46610910 46611034 -54769487 - FLAM_A SINE Alu -8 125 2 256 217 17 17 chr15 46611090 46611150 -54769371 + MIR SINE MIR 84 143 -119 1960 112 12 0 chr15 46611305 46611563 -54768958 + AluSx SINE Alu 2 262 -50 1552 293 110 24 chr15 46611586 46612179 -54768342 + L1MEd LINE L1 177 820 -5299 1144 157 5 81 chr15 46612617 46612735 -54767786 - MER2 DNA MER2_type -139 206 111 1759 177 10 3 chr15 46612735 46613034 -54767487 + AluJb SINE Alu 1 301 -11 1144 157 5 81 chr15 46613034 46613138 -54767383 - MER2 DNA MER2_type -234 111 1 553 275 140 24 chr15 46613141 46613190 -54767331 + L1MEd LINE L1 996 1038 -1452 2235 111 0 13 chr15 46613190 46613497 -54767024 + AluSg SINE Alu 1 303 -7 553 275 140 24 chr15 46613497 46613968 -54766553 + L1MEd LINE L1 1038 1627 -863 1901 143 10 14 chr15 46614169 46614462 -54766059 + AluJo SINE Alu 1 292 -20 1736 119 61 73 chr15 46614696 46615039 -54765482 + MER1B DNA MER1_type 1 339 0 856 66 0 0 chr15 46615318 46615424 -54765097 + AluY SINE Alu 206 311 0 2135 136 0 0 chr15 46615437 46615745 -54764776 + AluSx SINE Alu 1 308 -4 555 128 81 0 chr15 46615788 46615874 -54764647 - MER46A DNA MER2_type -143 93 1 314 295 171 12 chr15 46615887 46616138 -54764383 + L1ME3 LINE L1 2546 2836 -3546 2326 92 0 3 chr15 46616225 46616531 -54763990 + AluSg SINE Alu 1 305 -5 322 183 166 35 chr15 46616554 46616723 -54763798 + L1ME3 LINE L1 3025 3215 -3167 347 293 68 54 chr15 46616921 46617152 -54763369 + L1ME3 LINE L1 3231 3457 -2925 1714 151 7 47 chr15 46617152 46617289 -54763232 + AluJb SINE Alu 1 142 -170 2636 45 3 0 chr15 46617289 46617597 -54762924 + AluY SINE Alu 1 309 -2 1714 151 7 47 chr15 46617597 46617758 -54762763 + AluJb SINE Alu 142 287 -25 347 293 68 54 chr15 46617758 46617806 -54762715 + L1ME3 LINE L1 3457 3503 -2879 2257 64 14 4 chr15 46617806 46618115 -54762406 + AluY SINE Alu 1 312 0 347 293 68 54 chr15 46618115 46618317 -54762204 + L1ME3 LINE L1 3503 3721 -2661 35 41 0 0 chr15 46618459 46618508 -54762013 + AT_rich Low_complexity Low_complexity 1 49 0 309 260 146 7 chr15 46618614 46618819 -54761702 + L1ME3 LINE L1 5152 5397 -985 2550 46 0 7 chr15 46619207 46619514 -54761007 - AluY SINE Alu -6 305 1 3679 147 29 78 chr15 46619594 46620151 -54760370 + L1MB7 LINE L1 5378 5961 -223 1691 166 13 10 chr15 46620151 46620452 -54760069 + AluJb SINE Alu 1 302 -10 3679 147 29 78 chr15 46620452 46620501 -54760020 + L1MB7 LINE L1 5961 6011 -173 1847 127 76 0 chr15 46620501 46620776 -54759745 + AluSx SINE Alu 1 296 -16 3679 147 29 78 chr15 46620776 46620942 -54759579 + L1MB7 LINE L1 6011 6111 -73 2150 114 6 19 chr15 46620942 46621258 -54759263 + AluSx SINE Alu 1 312 0 3679 147 29 78 chr15 46621258 46621307 -54759214 + L1MB7 LINE L1 6111 6161 -23 252 173 101 59 chr15 46621353 46621500 -54759021 + L1ME3 LINE L1 5438 5596 -797 503 274 139 20 chr15 46621596 46621841 -54758680 + L1ME3 LINE L1 5831 6104 -294 649 147 138 0 chr15 46621855 46621971 -54758550 + FLAM_C SINE Alu 2 133 0 2842 228 68 22 chr15 46622019 46622842 -54757679 + L1ME3A LINE L1 5262 6160 -10 1373 198 10 32 chr15 46622852 46622972 -54757549 + AluJb SINE Alu 1 122 -190 2210 89 10 7 chr15 46622972 46623264 -54757257 - AluSc SINE Alu -16 293 1 1373 198 10 32 chr15 46623264 46623451 -54757070 + AluJb SINE Alu 122 301 -11 454 228 68 117 chr15 46623470 46623673 -54756848 + L1M4 LINE L1 3440 3626 -2520 2277 82 0 0 chr15 46623673 46623976 -54756545 - AluSx SINE Alu 0 305 3 454 228 68 117 chr15 46623976 46624078 -54756443 + L1M4 LINE L1 3626 3731 -2415 246 62 0 0 chr15 46624078 46624110 -54756411 + (TA)n Simple_repeat Simple_repeat 2 33 0 277 239 64 45 chr15 46624227 46624399 -54756122 + L1MC/D LINE L1 5659 5835 -335 633 229 149 16 chr15 46624419 46624734 -54755787 + L1M4c LINE L1 2041 2397 -3987 189 0 0 0 chr15 46624735 46624756 -54755765 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2069 96 3 58 chr15 46624757 46625069 -54755452 + AluSg SINE Alu 2 296 -14 3106 216 41 35 chr15 46625072 46625186 -54755335 + L1M4c LINE L1 2449 2561 -3821 216 0 0 0 chr15 46625186 46625210 -54755311 + (TA)n Simple_repeat Simple_repeat 1 24 0 3106 216 41 35 chr15 46625210 46625625 -54754896 + L1M4c LINE L1 2561 2972 -3410 2191 125 0 3 chr15 46625625 46625922 -54754599 + AluSq SINE Alu 1 296 -17 3106 216 41 35 chr15 46625922 46626151 -54754370 + L1M4c LINE L1 2972 3216 -3166 1558 183 74 0 chr15 46626151 46626436 -54754085 - AluJb SINE Alu -6 306 1 3106 216 41 35 chr15 46626436 46626499 -54754022 + L1M4c LINE L1 3216 3277 -3105 * 3692 124 23 69 chr15 46626487 46626646 -54753875 + L1MA4 LINE L1 4697 4862 -1441 2299 73 40 10 chr15 46626646 46626947 -54753574 - AluY SINE Alu -1 310 1 3692 124 23 69 chr15 46626947 46627441 -54753080 + L1MA4 LINE L1 4862 5377 -926 2006 145 0 0 chr15 46627441 46627730 -54752791 + AluSx SINE Alu 1 289 -23 3692 124 23 69 chr15 46627730 46627869 -54752652 + L1MA4 LINE L1 5377 5430 -873 2368 58 0 10 chr15 46627869 46628164 -54752357 + AluY SINE Alu 1 292 -19 3692 124 23 69 chr15 46628164 46628345 -54752176 + L1MA4 LINE L1 5430 5618 -685 681 103 37 9 chr15 46628446 46628553 -54751968 + L1MA4 LINE L1 5623 5732 -571 1397 181 0 30 chr15 46628570 46628840 -54751681 + AluJo SINE Alu 15 276 -36 2012 136 7 3 chr15 46628840 46629134 -54751387 - AluJb SINE Alu -17 295 1 2641 127 58 62 chr15 46629168 46629574 -54750947 + L1MA4 LINE L1 5796 6201 -99 2089 133 3 0 chr15 46629574 46629876 -54750645 - AluSq SINE Alu -10 303 1 2641 127 58 62 chr15 46629876 46629973 -54750548 + L1MA4 LINE L1 6201 6297 -3 1688 166 93 2 chr15 46629979 46630215 -54750306 + L1M4c LINE L1 3264 3477 -2905 2060 148 0 3 chr15 46630215 46630518 -54750003 + AluSx SINE Alu 1 302 -10 1688 166 93 2 chr15 46630518 46630679 -54749842 + L1M4c LINE L1 3477 3697 -2685 816 173 8 0 chr15 46630679 46630806 -54749715 + AluJo SINE Alu 2 129 -183 2160 87 31 3 chr15 46631787 46632075 -54748446 - AluSx SINE Alu -16 296 1 234 273 18 0 chr15 46632158 46632213 -54748308 - L2 LINE L2 -19 3253 3198 561 219 130 47 chr15 46632217 46632409 -54748112 - MER112 DNA MER1_type -48 212 5 384 237 0 0 chr15 46632420 46632496 -54748025 + MER5C DNA MER1_type 1 76 -248 582 163 0 0 chr15 46632585 46632671 -54747850 + AluJb SINE Alu 3 88 -224 365 203 0 0 chr15 46632766 46632825 -54747696 + AluJo SINE Alu 115 173 -129 2206 107 3 0 chr15 46633079 46633369 -54747152 + AluSq SINE Alu 1 291 -22 255 79 0 0 chr15 46633845 46633883 -54746638 + (CA)n Simple_repeat Simple_repeat 2 39 0 1166 177 22 53 chr15 46633963 46634189 -54746332 - MER20 DNA MER1_type 0 219 1 1005 162 35 61 chr15 46634416 46634613 -54745908 + AluJb SINE Alu 90 281 -31 856 146 0 0 chr15 46634675 46634805 -54745716 - AluSg/x SINE Alu -16 296 167 504 239 0 44 chr15 46635212 46635325 -54745196 + MER5B DNA MER1_type 4 111 -67 832 167 0 35 chr15 46635338 46635482 -54745039 - FLAM_C SINE Alu -3 140 2 254 200 17 33 chr15 46635485 46635545 -54744976 - MER5B DNA MER1_type -116 62 4 3445 173 67 72 chr15 46635861 46636597 -54743924 + MER44D DNA MER2_type 2 605 0 2017 126 7 3 chr15 46636619 46636920 -54743601 + AluSx SINE Alu 1 302 -10 1083 145 0 24 chr15 46637010 46637176 -54743345 + AluJb SINE Alu 133 294 -18 2203 107 13 0 chr15 46637177 46637477 -54743044 + AluSx SINE Alu 1 304 -8 217 289 6 121 chr15 46637580 46637746 -54742775 + MIR SINE MIR 70 216 -46 2019 113 58 0 chr15 46637800 46638092 -54742429 + AluSc SINE Alu 1 309 0 929 268 137 33 chr15 46638186 46638671 -54741850 + MLT1H1 LTR MaLR 14 555 0 2308 93 7 0 chr15 46638895 46639195 -54741326 - AluSq SINE Alu -11 302 1 200 267 100 0 chr15 46639847 46639907 -54740614 - MIR SINE MIR -95 113 48 2137 92 0 7 chr15 46641127 46641408 -54739113 + AluSg SINE Alu 1 279 -31 779 57 105 0 chr15 46641652 46641757 -54738764 + L1PB2 LINE L1 6034 6149 -2 794 136 30 15 chr15 46641816 46641948 -54738573 + AluJo SINE Alu 2 135 -177 2224 99 3 0 chr15 46641957 46642249 -54738272 + AluSx SINE Alu 1 293 -19 190 107 0 0 chr15 46642391 46642419 -54738102 - MIR SINE MIR -151 57 30 2504 61 0 0 chr15 46642534 46642830 -54737691 + AluY SINE Alu 1 296 -15 189 0 0 0 chr15 46643183 46643204 -54737317 + (TA)n Simple_repeat Simple_repeat 2 22 0 1704 163 0 20 chr15 46643592 46643887 -54736634 + AluJo SINE Alu 1 289 -23 24 32 0 0 chr15 46644254 46644285 -54736236 + AT_rich Low_complexity Low_complexity 1 31 0 640 213 37 0 chr15 46644647 46644783 -54735738 - MER3 DNA MER1_type -68 141 1 573 189 133 66 chr15 46645017 46645213 -54735308 - L2 LINE L2 -1 3312 3104 1849 163 3 17 chr15 46645233 46645563 -54734958 - AluJb SINE Alu 0 312 1 225 0 0 0 chr15 46645572 46645597 -54734924 + (TG)n Simple_repeat Simple_repeat 2 26 0 205 162 95 95 chr15 46645784 46645858 -54734663 + MIR SINE MIR 114 187 -75 614 252 30 88 chr15 46647131 46647211 -54733310 - MER93a LTR ERV1 -20 382 299 1793 175 10 23 chr15 46647211 46647520 -54733001 + AluJb SINE Alu 1 305 -7 614 252 30 88 chr15 46647520 46647701 -54732820 - MER93a LTR ERV1 -103 299 136 321 26 0 0 chr15 46647738 46647776 -54732745 + (TG)n Simple_repeat Simple_repeat 2 39 0 234 91 0 0 chr15 46648142 46648175 -54732346 + (T)n Simple_repeat Simple_repeat 1 33 0 1365 151 50 0 chr15 46648560 46648779 -54731742 - AluSx SINE Alu -82 230 1 740 221 7 0 chr15 46648811 46648960 -54731561 - FRAM SINE Alu -18 158 9 180 0 0 0 chr15 46648978 46648998 -54731523 + (T)n Simple_repeat Simple_repeat 1 20 0 350 327 0 9 chr15 46649244 46649354 -54731167 - MER93a LTR ERV1 -293 109 1 2109 111 4 0 chr15 46649569 46649882 -54730639 - AluSx SINE Alu 0 316 3 1701 156 20 43 chr15 46649896 46650198 -54730323 - AluJo SINE Alu -9 303 9 2206 119 0 10 chr15 46650208 46650518 -54730003 - AluSx SINE Alu -5 307 1 2272 118 0 3 chr15 46650961 46651274 -54729247 - AluSx SINE Alu 0 312 1 2310 103 17 29 chr15 46651297 46651647 -54728874 + L1PB2 LINE L1 5804 6149 -2 1495 214 0 22 chr15 46651905 46652218 -54728303 + AluJo SINE Alu 1 306 -6 2318 71 54 0 chr15 46652688 46652982 -54727539 - AluSp SINE Alu -3 310 1 2104 140 0 0 chr15 46653197 46653490 -54727031 - AluSx SINE Alu -19 293 1 323 163 0 0 chr15 46654832 46654881 -54725640 + FLAM SINE Alu 61 109 -24 258 32 0 0 chr15 46654888 46654919 -54725602 + (GAAAA)n Simple_repeat Simple_repeat 1 31 0 2571 65 0 7 chr15 46655408 46655716 -54724805 - AluY SINE Alu -5 306 1 2118 129 0 0 chr15 46655716 46656010 -54724511 - AluJb SINE Alu -18 294 1 1939 96 74 0 chr15 46656123 46656393 -54724128 - AluSc SINE Alu -19 290 1 2334 75 3 3 chr15 46657609 46657902 -54722619 + AluSc SINE Alu 1 293 -16 862 258 5 14 chr15 46658687 46658908 -54721613 + MIR SINE MIR 1 219 -43 738 308 40 73 chr15 46659068 46659415 -54721106 - L2 LINE L2 -455 2859 2539 2262 94 0 3 chr15 46659415 46659701 -54720820 - AluSg SINE Alu -24 286 2 738 308 40 73 chr15 46659701 46659957 -54720564 - L2 LINE L2 -775 2539 2276 2254 116 3 0 chr15 46660055 46660358 -54720163 + AluSp SINE Alu 1 304 -9 2528 61 0 0 chr15 46660526 46660823 -54719698 + AluY SINE Alu 1 297 -14 2272 111 0 3 chr15 46661283 46661590 -54718931 + AluSq SINE Alu 1 306 -7 262 270 54 0 chr15 46661590 46661664 -54718857 - L1MC5 LINE L1 -54 7907 7830 493 372 21 5 chr15 46661806 46661997 -54718524 - MER91A DNA MER1_type -2 194 1 238 237 212 8 chr15 46661997 46662115 -54718406 - L1ME4a LINE L1 -140 5981 5840 2076 114 30 3 chr15 46662576 46662875 -54717646 + AluSq SINE Alu 1 307 -6 2189 108 14 0 chr15 46662876 46663173 -54717348 + AluSc SINE Alu 1 301 -8 213 39 0 0 chr15 46663330 46663356 -54717165 + (T)n Simple_repeat Simple_repeat 1 26 0 1728 79 19 0 chr15 46663372 46663588 -54716933 - AluY SINE Alu -91 220 1 1626 199 16 48 chr15 46663710 46664087 -54716434 - MLT1A1 LTR MaLR 0 365 1 1243 92 92 6 chr15 46664142 46664316 -54716205 + AluSx SINE Alu 1 189 -123 2358 81 0 0 chr15 46664328 46664613 -54715908 - AluSc SINE Alu -24 285 1 392 160 40 0 chr15 46664672 46664747 -54715774 + MER116 DNA Mariner 1 78 -2 1989 144 3 10 chr15 46664894 46665199 -54715322 - AluSx SINE Alu -9 303 1 207 0 0 0 chr15 46665654 46665677 -54714844 + (TA)n Simple_repeat Simple_repeat 1 23 0 2265 113 0 3 chr15 46665677 46665979 -54714542 - AluSx SINE Alu -11 301 1 837 127 0 0 chr15 46666000 46666118 -54714403 - FLAM_C SINE Alu -25 118 1 338 295 0 0 chr15 46666663 46666741 -54713780 - Zaphod DNA AcHobo 0 4031 3954 2075 132 0 16 chr15 46666781 46667085 -54713436 - AluSx SINE Alu -13 299 1 1257 205 28 64 chr15 46667085 46667144 -54713377 - Zaphod DNA AcHobo -60 3971 3911 2515 58 0 3 chr15 46667144 46667439 -54713082 - AluY SINE Alu -17 294 1 1257 205 28 64 chr15 46667439 46667504 -54713017 - Zaphod DNA AcHobo -120 3911 3845 2119 119 3 22 chr15 46667504 46667816 -54712705 + AluSx SINE Alu 1 306 -6 1257 205 28 64 chr15 46667816 46668081 -54712440 - Zaphod DNA AcHobo -186 3845 3595 2398 72 0 7 chr15 46668106 46668410 -54712111 + AluY SINE Alu 1 302 -9 1019 206 57 24 chr15 46668455 46668702 -54711819 + MER50 LTR ERV1 10 264 -470 2315 78 7 7 chr15 46668702 46669050 -54711471 + AluSq SINE Alu 1 313 0 364 176 55 44 chr15 46669054 46669134 -54711387 + MER50 LTR ERV1 489 572 -162 1863 109 102 11 chr15 46669134 46669418 -54711103 - AluSq SINE Alu -3 310 1 628 119 88 126 chr15 46669436 46669552 -54710969 + MER46A DNA MER2_type 83 193 -2538 2091 97 4 7 chr15 46669552 46669830 -54710691 - AluSq SINE Alu -17 296 20 628 119 88 126 chr15 46669830 46669872 -54710649 + MER46A DNA MER2_type 193 235 -1 333 307 11 0 chr15 46669873 46669961 -54710560 - Charlie1 DNA MER1_type -2672 89 1 2091 121 0 0 chr15 46669974 46670247 -54710274 - AluSx SINE Alu -24 288 16 2256 48 0 8 chr15 46670423 46670691 -54709830 + AluY SINE Alu 37 302 -9 357 267 0 0 chr15 46670694 46670784 -54709737 - L1MC4 LINE L1 -1339 6703 6614 307 267 47 0 chr15 46670732 46670818 -54709703 + L1MC4 LINE L1 6614 6703 -1339 * 558 138 153 43 chr15 46670818 46671072 -54709449 + Zaphod DNA AcHobo 684 965 -3066 531 147 128 29 chr15 46671072 46671174 -54709347 - FLAM_A SINE Alu -10 132 21 1046 105 46 0 chr15 46671174 46671327 -54709194 - MER50 LTR ERV1 -9 725 566 2053 88 39 59 chr15 46671327 46671633 -54708888 + AluSx SINE Alu 1 300 -12 2242 96 0 0 chr15 46671633 46671913 -54708608 + AluSx SINE Alu 1 280 -32 225 0 0 0 chr15 46671913 46671938 -54708583 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 816 133 126 0 chr15 46671938 46672081 -54708440 + Charlie1b DNA MER1_type 135 295 -228 * 946 189 97 0 chr15 46672074 46672249 -54708272 - MER21B LTR ERV1 -364 499 308 827 95 0 0 chr15 46672249 46672354 -54708167 - AluSx SINE Alu -14 298 194 1125 106 0 0 chr15 46672355 46672496 -54708025 - AluSx SINE Alu -171 141 1 1151 139 166 5 chr15 46672528 46672751 -54707770 - MER21A LTR ERV1 -667 264 6 13281 152 30 36 chr15 46672756 46673881 -54706640 - MER21A-int LTR ERV1 0 4191 3061 240 35 0 0 chr15 46673881 46673910 -54706611 + (TA)n Simple_repeat Simple_repeat 2 30 0 2425 79 0 0 chr15 46673910 46674201 -54706320 - AluSg SINE Alu -19 291 1 13281 152 30 36 chr15 46674201 46674482 -54706039 - MER21A-int LTR ERV1 -1129 3062 2781 2273 57 7 57 chr15 46674482 46674783 -54705738 + AluY SINE Alu 1 286 -25 13281 152 30 36 chr15 46674783 46674795 -54705726 - MER21A-int LTR ERV1 -1410 2781 2770 207 0 0 0 chr15 46674795 46674818 -54705703 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 13281 152 30 36 chr15 46674818 46675763 -54704758 - MER21A-int LTR ERV1 -1421 2770 1838 1056 195 31 5 chr15 46675767 46675962 -54704559 - MER21A-int LTR ERV1 -2471 1720 1521 1741 169 0 29 chr15 46675962 46676275 -54704246 - AluJb SINE Alu -8 304 1 2195 86 31 14 chr15 46676299 46676619 -54703902 + AluSc SINE Alu 1 325 0 2289 89 3 0 chr15 46676625 46676939 -54703582 + AluSp SINE Alu 2 313 0 285 129 0 0 chr15 46676978 46677040 -54703481 - Charlie1 DNA MER1_type -177 2584 2523 300 180 0 0 chr15 46677085 46677135 -54703386 + L1MC1 LINE L1 6257 6306 -27 252 156 0 0 chr15 46677135 46677180 -54703341 + Charlie1 DNA MER1_type 2661 2705 -56 3087 120 95 51 chr15 46677188 46677548 -54702973 - L1MC1 LINE L1 0 6333 5990 1769 92 134 8 chr15 46677548 46677810 -54702711 - AluSc SINE Alu -14 295 1 3087 120 95 51 chr15 46677810 46677910 -54702611 - L1MC1 LINE L1 -343 5990 5896 2457 90 0 3 chr15 46677910 46678221 -54702300 - AluSq SINE Alu -3 310 1 3087 120 95 51 chr15 46678221 46678349 -54702172 - L1MC1 LINE L1 -437 5896 5718 435 216 39 39 chr15 46678501 46678654 -54701867 + AluSq SINE Alu 74 226 -87 2150 92 13 28 chr15 46678828 46679145 -54701376 + AluSp SINE Alu 1 312 -1 1753 135 5 158 chr15 46679153 46679584 -54700937 - L1MC1 LINE L1 -2263 5732 5368 585 124 0 34 chr15 46679585 46679674 -54700847 - AluS SINE Alu -225 87 2 2103 127 6 19 chr15 46679704 46680020 -54700501 - AluSx SINE Alu 0 312 1 2392 92 0 10 chr15 46680039 46680353 -54700168 - AluY SINE Alu 0 311 1 291 158 99 59 chr15 46680354 46680455 -54700066 - L1MC1 LINE L1 -966 5367 5263 997 120 8 0 chr15 46680456 46680589 -54699932 - AluSq/x SINE Alu -179 134 1 492 160 21 0 chr15 46680590 46680684 -54699837 - L1MC1 LINE L1 -864 5282 5187 2085 147 0 7 chr15 46680694 46681001 -54699520 - AluSx SINE Alu -7 305 1 1629 179 6 26 chr15 46681007 46681319 -54699202 - AluJo SINE Alu 0 312 7 1632 120 0 24 chr15 46681335 46681585 -54698936 - AluSq SINE Alu -2 311 68 1264 222 3 11 chr15 46681622 46681906 -54698615 + AluY SINE Alu 20 301 -10 1111 153 59 5 chr15 46682921 46683123 -54697398 + AluJo SINE Alu 83 295 -17 372 196 170 0 chr15 46683382 46683494 -54697027 + MIR SINE MIR 90 220 -42 1942 143 4 0 chr15 46683604 46683883 -54696638 - AluSx SINE Alu -24 288 9 1378 185 10 53 chr15 46683950 46684253 -54696268 - AluJo SINE Alu -22 290 1 2203 85 0 4 chr15 46684417 46684698 -54695823 + AluSx SINE Alu 28 307 -5 1698 141 81 25 chr15 46685210 46685493 -54695028 + AluJo SINE Alu 1 299 -13 2006 109 18 3 chr15 46685502 46685786 -54694735 + AluSq SINE Alu 9 296 -17 2166 103 14 3 chr15 46685793 46686085 -54694436 + AluSg SINE Alu 1 295 -15 1313 175 78 45 chr15 46686120 46686428 -54694093 + MLT1A2 LTR MaLR 57 374 0 2160 124 3 0 chr15 46686696 46686995 -54693526 + AluSx SINE Alu 2 301 -11 2083 135 0 13 chr15 46687000 46687304 -54693217 + AluSx SINE Alu 1 300 -12 2064 135 14 3 chr15 46687518 46687814 -54692707 + AluSx SINE Alu 3 301 -11 1713 156 21 17 chr15 46687900 46688188 -54692333 + AluSx SINE Alu 1 289 -23 401 198 130 51 chr15 46688216 46688393 -54692128 + L1MC5 LINE L1 7722 7912 -49 194 191 257 38 chr15 46688576 46688681 -54691840 - MIR SINE MIR -49 213 86 2115 136 0 0 chr15 46688695 46688990 -54691531 + AluSx SINE Alu 1 295 -17 2113 103 10 7 chr15 46690048 46690339 -54690182 + AluSg SINE Alu 1 292 -18 2236 98 0 14 chr15 46690430 46690727 -54689794 + AluSc SINE Alu 1 293 -16 486 319 87 9 chr15 46691589 46691818 -54688703 + MIR SINE MIR 4 250 -12 2353 80 13 3 chr15 46691930 46692230 -54688291 + AluY SINE Alu 1 303 -8 2310 114 0 0 chr15 46692591 46692889 -54687632 - AluSx SINE Alu -14 298 1 2270 108 3 10 chr15 46692963 46693277 -54687244 - AluSq SINE Alu -1 312 1 889 216 0 70 chr15 46693411 46693491 -54687030 - AluJo SINE Alu -99 213 129 2151 119 3 7 chr15 46693491 46693820 -54686701 - AluSx SINE Alu 0 312 1 889 216 0 70 chr15 46693820 46693966 -54686555 - AluJo SINE Alu -183 129 3 238 270 78 26 chr15 46694644 46694759 -54685762 - L2 LINE L2 -864 2450 2330 295 246 59 25 chr15 46695425 46695543 -54684978 + L1M4 LINE L1 5022 5143 -1003 1638 166 42 7 chr15 46695561 46695850 -54684671 + AluJo SINE Alu 1 299 -13 1912 127 0 0 chr15 46695904 46696157 -54684364 + AluSq SINE Alu 1 253 -60 337 139 0 14 chr15 46696551 46696623 -54683898 - L1MA7 LINE L1 -2 6289 6219 1058 135 6 0 chr15 46696623 46696801 -54683720 + (TA)n Simple_repeat Simple_repeat 1 179 0 471 185 0 0 chr15 46696801 46696893 -54683628 + (CATATA)n Simple_repeat Simple_repeat 1 92 0 3172 134 93 5 chr15 46696894 46697453 -54683068 - L1MA7 LINE L1 -73 6218 5611 1067 186 0 0 chr15 46697455 46697638 -54682883 - FRAM SINE Alu -1 175 1 5566 146 34 16 chr15 46697647 46698885 -54681636 - L1MA7 LINE L1 -703 5588 4319 1900 145 30 10 chr15 46698885 46699182 -54681339 + AluJo SINE Alu 1 303 -9 5566 146 34 16 chr15 46699182 46699409 -54681112 - L1MA7 LINE L1 -1972 4319 4098 1977 122 56 11 chr15 46699410 46699697 -54680824 + AluSx SINE Alu 1 300 -12 1433 165 60 1 chr15 46699697 46700010 -54680511 - L1 LINE L1 -2374 3772 3435 852 111 0 0 chr15 46700128 46700245 -54680276 + AluSg/x SINE Alu 183 299 -11 1392 219 61 39 chr15 46700250 46700793 -54679728 - L1 LINE L1 -3418 2728 2174 1903 111 63 0 chr15 46700797 46701067 -54679454 + AluSx SINE Alu 7 293 -19 24 32 0 0 chr15 46701251 46701282 -54679239 + AT_rich Low_complexity Low_complexity 1 31 0 30 0 0 0 chr15 46701358 46701388 -54679133 + AT_rich Low_complexity Low_complexity 1 30 0 405 197 13 0 chr15 46701444 46701520 -54679001 + L1PA8A LINE L1 6048 6124 -7 526 291 174 80 chr15 46701586 46701753 -54678768 + L2 LINE L2 2137 2287 -1027 226 88 59 0 chr15 46701753 46701853 -54678668 - Alu SINE Alu 0 350 249 1040 124 159 15 chr15 46701853 46701906 -54678615 + MER30 DNA MER1_type 1 45 -185 1794 171 7 7 chr15 46701906 46702204 -54678317 + AluSx SINE Alu 1 298 -14 1040 124 159 15 chr15 46702204 46702351 -54678170 + MER30 DNA MER1_type 45 230 0 526 291 174 80 chr15 46702351 46702712 -54677809 + L2 LINE L2 2286 2753 -561 917 228 56 0 chr15 46702765 46702962 -54677559 - MER58A DNA MER1_type -4 220 13 251 349 9 28 chr15 46702974 46703080 -54677441 + L2 LINE L2 2822 2925 -389 261 233 22 22 chr15 46703331 46703421 -54677100 + L1MEd LINE L1 636 725 -5394 1051 296 94 19 chr15 46703451 46703921 -54676600 + LTR33 LTR ERVL 9 513 -8 425 266 98 80 chr15 46703953 46704068 -54676453 + L1MEd LINE L1 993 1104 -1386 2133 122 3 0 chr15 46704068 46704362 -54676159 - AluSq SINE Alu -18 295 1 425 266 98 80 chr15 46704362 46704396 -54676125 + L1MEd LINE L1 1104 1136 -1354 1776 141 36 36 chr15 46704396 46704701 -54675820 + AluJb SINE Alu 1 305 -7 425 266 98 80 chr15 46704701 46704877 -54675644 + L1MEd LINE L1 1136 1322 -1168 1583 195 122 3 chr15 46704878 46705262 -54675259 - MER63B DNA MER1_type -6 430 1 3747 237 48 20 chr15 46705418 46706643 -54673878 + L1M4 LINE L1 3144 4403 -1743 1778 112 0 8 chr15 46706670 46706919 -54673602 - AluSq SINE Alu 0 313 67 1838 194 72 16 chr15 46706923 46707309 -54673212 + MLT2B1 LTR ERVL 63 470 -50 1568 220 3 0 chr15 46707324 46707656 -54672865 + MLT-int LTR MaLR 1 333 -1402 5775 142 10 36 chr15 46707659 46708763 -54671758 - L1PB2 LINE L1 -3 6148 5017 2382 64 0 0 chr15 46708763 46709066 -54671455 - AluY SINE Alu 0 303 1 5775 142 10 36 chr15 46709066 46709673 -54670848 - L1PB2 LINE L1 -1134 5017 4493 2063 98 8 0 chr15 46709673 46709939 -54670582 - AluSq SINE Alu -45 268 1 5775 142 10 36 chr15 46709939 46710035 -54670486 - L1PB2 LINE L1 -1658 4493 4396 1412 116 0 20 chr15 46710042 46710280 -54670241 - AluSg/x SINE Alu 0 319 86 4104 177 15 47 chr15 46710280 46710825 -54669696 - L1PB2 LINE L1 -1729 4417 3919 2182 107 31 0 chr15 46710825 46711115 -54669406 - AluSx SINE Alu -13 299 1 4104 177 15 47 chr15 46711115 46711584 -54668937 - L1PB2 LINE L1 -2227 3919 3436 527 221 0 0 chr15 46711585 46711689 -54668832 + MLT-int LTR MaLR 320 423 -1312 2172 129 0 0 chr15 46711702 46712004 -54668517 + AluSx SINE Alu 11 312 0 250 62 62 21 chr15 46712015 46712063 -54668458 + GA-rich Low_complexity Low_complexity 5 54 0 2012 115 10 23 chr15 46712088 46712392 -54668129 - AluSq SINE Alu -13 300 1 1231 212 7 33 chr15 46712392 46712698 -54667823 + MLT1A1-int LTR MaLR 435 732 -639 2333 73 3 16 chr15 46712707 46713022 -54667499 + AluY SINE Alu 1 311 0 234 132 0 0 chr15 46713026 46713064 -54667457 + MLT1A1-int LTR MaLR 819 856 -515 2072 216 30 17 chr15 46713354 46713822 -54666699 + MLT1A1-int LTR MaLR 1262 1735 0 1732 175 8 38 chr15 46713822 46714187 -54666334 + MLT1A1 LTR MaLR 1 354 -11 5154 185 47 24 chr15 46714192 46714520 -54666001 + L1MC1 LINE L1 4415 4734 -1599 2418 77 7 0 chr15 46714520 46714818 -54665703 + AluSx SINE Alu 1 300 -12 5154 185 47 24 chr15 46714818 46715222 -54665299 + L1MC1 LINE L1 4734 5127 -1206 2116 125 0 3 chr15 46715222 46715507 -54665014 + AluSx SINE Alu 1 286 -26 230 0 0 32 chr15 46715507 46715538 -54664983 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 5154 185 47 24 chr15 46715548 46716240 -54664281 + L1MC1 LINE L1 5127 5890 -443 9161 97 11 9 chr15 46716240 46717525 -54662996 + HSMAR1 DNA Mariner 1 1287 0 5154 185 47 24 chr15 46717525 46717889 -54662632 + L1MC1 LINE L1 5890 6244 -89 2289 114 0 0 chr15 46717910 46718207 -54662314 - AluSq SINE Alu -16 297 1 423 0 0 0 chr15 46718258 46718305 -54662216 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 364 259 6 82 chr15 46718418 46718479 -54662042 + L1MC4 LINE L1 6952 7016 -1026 1836 162 10 7 chr15 46718479 46718782 -54661739 + AluJb SINE Alu 1 304 -8 364 259 6 82 chr15 46718782 46718878 -54661643 + L1MC4 LINE L1 7016 7097 -945 569 223 54 22 chr15 46718918 46719142 -54661379 + L1MC5 LINE L1 6993 7223 -738 245 314 33 33 chr15 46719166 46719319 -54661202 + L1MC4a LINE L1 7244 7396 -412 1990 127 40 0 chr15 46719494 46719794 -54660727 - AluSx SINE Alu 0 312 1 229 261 0 22 chr15 46719804 46719896 -54660625 - L1MC4 LINE L1 -1339 6703 6614 240 167 0 0 chr15 46719896 46719944 -54660577 + (TA)n Simple_repeat Simple_repeat 2 49 0 242 267 12 0 chr15 46719947 46720033 -54660488 + L1MC4 LINE L1 6615 6701 -1341 230 264 23 0 chr15 46719994 46720081 -54660440 - L1MC4 LINE L1 -1340 6702 6614 * 306 245 0 82 chr15 46720097 46720195 -54660326 + L1MC4 LINE L1 6614 6703 -1339 240 234 130 0 chr15 46720234 46720311 -54660210 - L1MC4 LINE L1 -1342 6700 6614 * 263 181 83 0 chr15 46720242 46720314 -54660207 + L1MC4 LINE L1 6615 6692 -1350 226 167 48 0 chr15 46720348 46720390 -54660131 + MER20 DNA MER1_type 1 44 -175 508 268 47 22 chr15 46720481 46720757 -54659764 + L1MC5 LINE L1 7501 7783 -178 1262 119 0 0 chr15 46720759 46720919 -54659602 + AluSx SINE Alu 1 160 -152 874 279 24 34 chr15 46721566 46721774 -54658747 + AluY SINE Alu 94 299 -12 1559 185 35 78 chr15 46722528 46722622 -54657899 + MLT1C LTR MaLR 1 98 -369 1701 94 75 130 chr15 46722622 46722953 -54657568 + AluSp SINE Alu 1 313 0 1559 185 35 78 chr15 46722953 46723171 -54657350 + MLT1C LTR MaLR 98 287 -180 2179 115 7 0 chr15 46723171 46723476 -54657045 + AluSx SINE Alu 2 308 -4 1559 185 35 78 chr15 46723476 46723649 -54656872 + MLT1C LTR MaLR 287 466 -1 2238 101 0 3 chr15 46723958 46724254 -54656267 - AluSc SINE Alu -8 301 7 1299 119 0 0 chr15 46725316 46725501 -54655020 + AluSg/x SINE Alu 115 299 -11 1942 95 7 3 chr15 46725669 46725952 -54654569 - L1PB2 LINE L1 -3 6148 5865 313 306 110 58 chr15 46726234 46726407 -54654114 + MIR SINE MIR 10 191 -71 2333 91 7 0 chr15 46726675 46726972 -54653549 + AluSq SINE Alu 1 299 -14 332 247 105 40 chr15 46727002 46727249 -54653272 + L1ME4a LINE L1 5855 6117 -4 1951 150 3 3 chr15 46727329 46727615 -54652906 + AluJo SINE Alu 3 288 -24 1187 321 116 30 chr15 46727742 46728207 -54652314 + L3 LINE CR1 117 650 -927 2360 96 0 3 chr15 46728207 46728508 -54652013 - AluSg SINE Alu -10 300 1 1187 321 116 30 chr15 46728508 46728665 -54651856 + L3 LINE CR1 650 792 -785 237 247 130 0 chr15 46728679 46728756 -54651765 + L3 LINE CR1 1329 1415 -162 298 274 57 8 chr15 46729132 46729256 -54651265 - LTR67 LTR ERVL -3 554 425 249 209 0 0 chr15 46730359 46730426 -54650095 + (TA)n Simple_repeat Simple_repeat 1 67 0 383 275 55 0 chr15 46730559 46730701 -54649820 - L1ME LINE L1 -540 5581 5434 1070 166 50 55 chr15 46730837 46731156 -54649365 + MER33 DNA MER1_type 1 308 -16 262 220 85 0 chr15 46731330 46731389 -54649132 + MER91 DNA MER1_type 77 140 0 22 0 0 0 chr15 46731468 46731490 -54649031 + AT_rich Low_complexity Low_complexity 1 22 0 383 305 122 89 chr15 46732860 46733254 -54647267 - HAL1 LINE L1 -763 1744 1338 204 40 0 0 chr15 46733861 46733886 -54646635 + (TTTTTG)n Simple_repeat Simple_repeat 5 29 0 2125 112 0 14 chr15 46734481 46734801 -54645720 - AluSx SINE Alu 0 316 1 282 234 144 58 chr15 46734932 46735120 -54645401 + L1ME LINE L1 5546 5749 -372 2457 74 3 6 chr15 46736246 46736558 -54643963 + AluSp SINE Alu 1 311 -2 1858 237 131 27 chr15 46736598 46737294 -54643227 - LTR50 LTR ERVL -24 771 4 234 257 0 14 chr15 46737354 46737424 -54643097 + GA-rich Low_complexity Low_complexity 2 70 0 2225 102 7 0 chr15 46737778 46738073 -54642448 + AluSx SINE Alu 1 297 -15 315 0 0 0 chr15 46738242 46738277 -54642244 + (TG)n Simple_repeat Simple_repeat 1 35 0 2230 109 6 3 chr15 46739260 46739571 -54640950 - AluSx SINE Alu 0 312 1 180 0 0 0 chr15 46739836 46739856 -54640665 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 529 152 0 0 chr15 46739926 46740018 -54640503 + L1MB3 LINE L1 5570 5661 -522 3113 133 9 11 chr15 46740058 46740370 -54640151 + L1MB3 LINE L1 5652 5964 -219 1681 147 10 38 chr15 46740370 46740683 -54639838 + AluJo SINE Alu 1 304 -8 3113 133 9 11 chr15 46740683 46740896 -54639625 + L1MB3 LINE L1 5964 6176 -7 1491 179 16 82 chr15 46741014 46741454 -54639067 + Charlie1b DNA MER1_type 1 411 -112 1966 141 70 27 chr15 46741788 46742200 -54638321 + MER50 LTR ERV1 10 439 -295 4152 118 188 88 chr15 46742214 46743504 -54637017 - pTR5 LTR ERV1 -143 2295 742 618 171 7 36 chr15 46743508 46743648 -54636873 + MER50 LTR ERV1 443 578 -156 2427 78 15 0 chr15 46744531 46744866 -54635655 - L1PA14 LINE L1 -18 6143 5804 529 179 98 0 chr15 46744869 46744981 -54635540 + Charlie1b DNA MER1_type 401 523 0 629 349 24 8 chr15 46745641 46745893 -54634628 + MIR SINE MIR 7 262 0 938 128 0 0 chr15 46745952 46746077 -54634444 + AluSq/x SINE Alu 1 125 -187 1851 114 12 4 chr15 46746200 46746455 -54634066 - AluSg SINE Alu -53 257 1 1994 129 3 10 chr15 46746808 46747121 -54633400 + AluSx SINE Alu 1 312 0 359 327 39 18 chr15 46747142 46747270 -54633251 + MIR SINE MIR 2 127 -81 2382 102 0 6 chr15 46747306 46747619 -54632902 + AluSx SINE Alu 1 311 -1 553 132 0 0 chr15 46747622 46747698 -54632823 + AluSx SINE Alu 1 76 -237 1365 158 27 5 chr15 46747839 46748061 -54632460 + AluSx SINE Alu 85 311 -1 2211 114 0 3 chr15 46748569 46748868 -54631653 + AluSg SINE Alu 2 299 -11 1193 312 37 24 chr15 46748897 46749332 -54631189 + MER115 DNA AcHobo 1 437 -256 3406 219 76 12 chr15 46749364 46750163 -54630358 - MER21B LTR ERV1 -11 852 3 887 279 29 16 chr15 46750191 46750354 -54630167 + MER115 DNA AcHobo 445 613 -80 2562 56 0 0 chr15 46750354 46750657 -54629864 - AluY SINE Alu -8 303 1 887 279 29 16 chr15 46750657 46750737 -54629784 + MER115 DNA AcHobo 613 691 -2 265 175 0 79 chr15 46750964 46751027 -54629494 + L2 LINE L2 3211 3268 -45 833 165 0 0 chr15 46751047 46751180 -54629341 - FLAM_C SINE Alu 0 133 1 2302 119 0 3 chr15 46751189 46751491 -54629030 - AluSx SINE Alu -11 301 1 2326 112 0 0 chr15 46751576 46751888 -54628633 - AluSx SINE Alu 0 312 1 747 139 0 0 chr15 46751933 46752076 -54628445 - FLAM_A SINE Alu 0 150 8 878 146 18 30 chr15 46752678 46752843 -54627678 + AluSp SINE Alu 1 163 -150 1062 77 0 0 chr15 46753249 46753379 -54627142 + AluSp SINE Alu 167 296 -17 1068 224 110 27 chr15 46753699 46753962 -54626559 - LTR40a LTR ERVL 0 519 235 2007 144 7 0 chr15 46754079 46754384 -54626137 - AluSx SINE Alu -5 307 1 709 220 112 58 chr15 46754385 46754704 -54625817 - LTR54 LTR ERV1 -28 482 78 1899 158 3 0 chr15 46755781 46756079 -54624442 + AluSp SINE Alu 1 299 -14 21 0 0 0 chr15 46756316 46756337 -54624184 + AT_rich Low_complexity Low_complexity 1 21 0 630 125 0 0 chr15 46756526 46756614 -54623907 - AluS SINE Alu -223 89 2 411 284 65 48 chr15 46756690 46756772 -54623749 + MIR SINE MIR 20 99 -163 1967 126 7 0 chr15 46756772 46757049 -54623472 - AluSg SINE Alu -21 289 11 411 284 65 48 chr15 46757049 46757195 -54623326 + MIR SINE MIR 99 252 -10 2295 109 3 0 chr15 46757617 46757920 -54622601 + AluSq SINE Alu 9 312 -1 909 137 8 0 chr15 46757920 46758051 -54622470 + FLAM_C SINE Alu 1 132 -11 4081 183 83 15 chr15 46758059 46758536 -54621985 - MER21B LTR ERV1 -3 860 306 2296 95 3 0 chr15 46758536 46758830 -54621691 - AluSg SINE Alu -15 295 1 4081 183 83 15 chr15 46758830 46759143 -54621378 - MER21B LTR ERV1 -557 306 16 2016 124 13 0 chr15 46759143 46759450 -54621071 + MER2 DNA MER2_type 1 311 -34 947 96 0 0 chr15 46760094 46760219 -54620302 + FLAM_C SINE Alu 1 125 -8 2319 78 3 0 chr15 46760243 46760555 -54619966 + AluSx SINE Alu 1 313 0 745 293 61 56 chr15 46760653 46761049 -54619472 + MLT1J2 LTR MaLR 9 406 -44 2080 137 0 13 chr15 46761081 46761394 -54619127 + AluSx SINE Alu 1 309 -3 2099 108 0 30 chr15 46761638 46761943 -54618578 - AluSx SINE Alu -16 296 1 2007 104 73 0 chr15 46763191 46763479 -54617042 - AluSx SINE Alu -3 309 1 278 323 58 26 chr15 46763482 46763576 -54616945 - MIR SINE MIR -17 245 143 5002 76 19 29 chr15 46763576 46764021 -54616500 + LTR8 LTR ERV1 1 438 -253 2101 116 3 7 chr15 46764021 46764322 -54616199 + AluSg SINE Alu 1 300 -10 5002 76 19 29 chr15 46764322 46764572 -54615949 + LTR8 LTR ERV1 438 689 -2 278 323 58 26 chr15 46764572 46764632 -54615889 - MIR SINE MIR -119 143 86 365 211 199 81 chr15 46764693 46764729 -54615792 - MER5A DNA MER1_type 0 189 159 2452 65 0 0 chr15 46764729 46765023 -54615498 + AluY SINE Alu 1 294 -17 2075 142 0 3 chr15 46765031 46765327 -54615194 + AluJb SINE Alu 1 295 -17 365 211 199 81 chr15 46765327 46765442 -54615079 - MER5A DNA MER1_type -36 153 10 268 289 70 9 chr15 46765447 46765561 -54614960 - MLT1L LTR MaLR -49 566 446 2219 120 3 0 chr15 46765567 46765875 -54614646 - AluSp SINE Alu -4 309 1 1006 126 0 0 chr15 46765875 46766010 -54614511 - AluSq/x SINE Alu -178 135 1 300 261 0 108 chr15 46766011 46766066 -54614455 - MLT1L LTR MaLR -168 447 408 2191 105 30 0 chr15 46766066 46766361 -54614160 + AluSq SINE Alu 1 304 -9 300 261 0 108 chr15 46766361 46766416 -54614105 - MLT1L LTR MaLR -207 408 349 2298 98 0 0 chr15 46766505 46766800 -54613721 + AluSc SINE Alu 2 296 -13 243 287 85 18 chr15 46767497 46767661 -54612860 + L1M4 LINE L1 4913 5087 -1059 2212 126 10 0 chr15 46767827 46768128 -54612393 + AluSx SINE Alu 1 304 -8 207 301 12 0 chr15 46768397 46768480 -54612041 + (CATA)n Simple_repeat Simple_repeat 3 86 0 2483 77 0 0 chr15 46768529 46768826 -54611695 - AluY SINE Alu -14 297 1 2163 130 0 7 chr15 46768867 46769175 -54611346 - AluSx SINE Alu -2 310 5 2309 115 0 3 chr15 46769314 46769618 -54610903 - AluSx SINE Alu -9 303 1 645 146 64 0 chr15 46771033 46771143 -54609378 + MER94 DNA DNA 1 117 -17 2172 91 40 13 chr15 46771224 46771522 -54608999 - AluSq SINE Alu -7 306 1 252 0 0 0 chr15 46771592 46771620 -54608901 + (TA)n Simple_repeat Simple_repeat 1 28 0 1466 194 0 32 chr15 46771621 46771905 -54608616 - AluJo SINE Alu -27 285 11 1060 200 31 0 chr15 46772918 46773113 -54607408 + MER3 DNA MER1_type 8 208 -1 2331 105 3 3 chr15 46773150 46773463 -54607058 + AluSq SINE Alu 1 313 0 2203 121 3 0 chr15 46773591 46773880 -54606641 + AluSg SINE Alu 3 292 -18 775 263 72 90 chr15 46773884 46774274 -54606247 + L2 LINE L2 2779 3135 -178 1708 168 70 3 chr15 46774274 46774560 -54605961 - AluJo SINE Alu -7 305 1 775 263 72 90 chr15 46774560 46774670 -54605851 + L2 LINE L2 3135 3245 -68 635 190 109 22 chr15 46774672 46774809 -54605712 + MER63 DNA MER1_type 1 775 -287 810 253 29 17 chr15 46774810 46775051 -54605470 + L1ME3A LINE L1 5925 6168 -2 2193 121 16 0 chr15 46775067 46775372 -54605149 + AluSx SINE Alu 1 310 -2 742 269 0 0 chr15 46775390 46775546 -54604975 + AluSg/x SINE Alu 134 289 -23 21 0 0 0 chr15 46775546 46775567 -54604954 + AT_rich Low_complexity Low_complexity 1 21 0 1139 89 7 0 chr15 46776072 46776218 -54604303 + AluSq/x SINE Alu 3 149 -163 555 104 0 0 chr15 46777164 46777241 -54603280 - AluS SINE Alu -236 77 1 1820 152 11 3 chr15 46777566 46777849 -54602672 + AluJb SINE Alu 1 285 -27 2207 132 0 0 chr15 46778154 46778464 -54602057 - AluSx SINE Alu -2 310 1 2266 101 0 0 chr15 46778645 46778933 -54601588 - AluSg SINE Alu -22 288 1 2257 109 0 6 chr15 46779353 46779664 -54600857 + AluSq SINE Alu 1 309 -4 2197 92 3 3 chr15 46780189 46780493 -54600028 - AluSq SINE Alu 0 305 2 2736 107 9 27 chr15 46780594 46781180 -54599341 + L1MA7 LINE L1 5620 6290 -1 676 117 0 0 chr15 46781326 46781420 -54599101 + AluSg/x SINE Alu 195 288 -21 934 181 77 22 chr15 46781460 46781740 -54598781 - L1M LINE L1 -737 5429 5140 180 0 0 0 chr15 46781741 46781761 -54598760 + (TA)n Simple_repeat Simple_repeat 2 21 0 2304 112 3 0 chr15 46781761 46782066 -54598455 - AluSg SINE Alu -4 306 1 676 234 70 0 chr15 46782077 46782235 -54598286 - FRAM SINE Alu -14 162 1 388 197 0 13 chr15 46782346 46782422 -54598099 - AluSc SINE Alu -109 190 116 638 214 19 31 chr15 46783116 46783275 -54597246 - AluSq SINE Alu -104 209 53 972 156 81 6 chr15 46783275 46783448 -54597073 - AluSg SINE Alu -124 186 1 214 329 119 19 chr15 46784152 46784362 -54596159 + L2 LINE L2 2557 2787 -527 2208 89 10 0 chr15 46784464 46784757 -54595764 + AluSp SINE Alu 3 298 -15 593 125 188 18 chr15 46784778 46784890 -54595631 + FLAM_C SINE Alu 11 141 -2 1596 97 5 5 chr15 46784895 46785111 -54595410 + AluSq SINE Alu 1 216 -97 26 0 0 0 chr15 46785380 46785406 -54595115 + AT_rich Low_complexity Low_complexity 1 26 0 754 186 0 8 chr15 46785819 46785948 -54594573 - FLAM_C SINE Alu -5 128 1 2135 127 7 0 chr15 46785976 46786275 -54594246 + AluSx SINE Alu 1 301 -11 2054 99 7 4 chr15 46786357 46786630 -54593891 - AluSp SINE Alu -17 296 23 535 180 180 0 chr15 46786652 46786763 -54593758 - FLAM_C SINE Alu -1 132 2 2255 119 0 3 chr15 46786845 46787148 -54593373 + AluSx SINE Alu 1 302 -10 695 163 21 146 chr15 46787173 46787276 -54593245 - L1M4 LINE L1 -774 5372 5314 1788 133 7 0 chr15 46787276 46787546 -54592975 - AluSq SINE Alu 0 313 42 695 163 21 146 chr15 46787546 46787682 -54592839 - L1M4 LINE L1 -832 5314 5163 1208 128 10 15 chr15 46787686 46787882 -54592639 - AluSg/x SINE Alu 0 310 116 1749 193 0 0 chr15 46787899 46788194 -54592327 - AluSx SINE Alu -17 295 1 1068 150 0 0 chr15 46788210 46788377 -54592144 - AluSq SINE Alu -12 301 135 221 0 0 33 chr15 46788377 46788407 -54592114 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 1847 117 19 11 chr15 46788408 46788673 -54591848 - AluSx SINE Alu -23 289 23 854 164 7 0 chr15 46789824 46789964 -54590557 - AluY SINE Alu -161 150 10 688 178 0 0 chr15 46790003 46790110 -54590411 - FLAM_C SINE Alu -34 109 3 448 164 0 0 chr15 46790135 46790208 -54590313 + AluJ/FLAM SINE Alu 1 73 -239 1760 131 11 8 chr15 46790208 46790468 -54590053 + AluSx SINE Alu 42 302 -10 2341 99 0 3 chr15 46790468 46790770 -54589751 + AluSq SINE Alu 1 301 -12 1910 122 0 7 chr15 46790813 46791083 -54589438 - AluSq SINE Alu -45 268 1 249 174 22 0 chr15 46791120 46791166 -54589355 - MER5A DNA MER1_type -121 68 22 358 172 0 0 chr15 46791381 46791439 -54589082 - AluS SINE Alu -244 59 2 1271 207 66 47 chr15 46791444 46791554 -54588967 - L1M4 LINE L1 -3277 2869 2763 2596 71 0 0 chr15 46791554 46791864 -54588657 + AluY SINE Alu 1 310 -1 1271 207 66 47 chr15 46791864 46792115 -54588406 - L1M4 LINE L1 -3383 2763 2501 187 301 96 14 chr15 46792125 46792198 -54588323 + MER5B DNA MER1_type 100 178 0 509 193 118 34 chr15 46792206 46792325 -54588196 - MER5A DNA MER1_type 0 189 61 1106 61 0 0 chr15 46792338 46792470 -54588051 - AluY SINE Alu -179 132 1 351 197 28 0 chr15 46792471 46792542 -54587979 - MER5A DNA MER1_type -114 75 3 379 132 53 13 chr15 46792557 46792633 -54587888 + MER5B DNA MER1_type 7 85 -93 665 96 10 19 chr15 46792639 46792743 -54587778 - MER4A LTR ERV1 -561 103 1 1549 151 33 15 chr15 46792745 46793016 -54587505 + AluJb SINE Alu 29 304 -8 2335 111 0 0 chr15 46793145 46793443 -54587078 + AluSq SINE Alu 1 298 -15 360 335 124 28 chr15 46793542 46794082 -54586439 + L2 LINE L2 2263 2854 -460 200 346 90 38 chr15 46794122 46794388 -54586133 + L2 LINE L2 2922 3201 -71 429 287 173 32 chr15 46794399 46794589 -54585932 - L2 LINE L2 -4 3309 3147 2520 77 3 0 chr15 46794589 46794899 -54585622 + AluSp SINE Alu 1 311 -2 429 287 173 32 chr15 46794899 46795195 -54585326 - L2 LINE L2 -166 3147 2894 2228 89 3 7 chr15 46795195 46795497 -54585024 - AluSc SINE Alu -8 301 1 429 287 173 32 chr15 46795497 46795717 -54584804 - L2 LINE L2 -419 2894 2511 280 321 0 38 chr15 46796323 46796482 -54584039 + C-rich Low_complexity Low_complexity 4 156 0 2534 68 0 3 chr15 46797801 46798109 -54582412 - AluSg SINE Alu -2 308 2 2381 82 0 38 chr15 46798686 46799004 -54581517 + AluSg SINE Alu 3 308 -2 218 274 32 0 chr15 46799110 46799172 -54581349 - MIR3 SINE MIR -7 201 138 2377 96 0 10 chr15 46799329 46799641 -54580880 - AluSx SINE Alu -3 309 1 1990 123 17 3 chr15 46799781 46800073 -54580448 - AluSx SINE Alu -16 296 1 2138 125 6 3 chr15 46800080 46800391 -54580130 - AluSp SINE Alu 0 313 2 1544 161 4 0 chr15 46800471 46800703 -54579818 + AluJo SINE Alu 55 290 -22 189 0 0 0 chr15 46800703 46800724 -54579797 + (CA)n Simple_repeat Simple_repeat 2 22 0 1634 189 55 32 chr15 46801023 46801168 -54579353 + MLT1A2 LTR MaLR 24 164 -210 2111 123 13 0 chr15 46801168 46801468 -54579053 + AluSx SINE Alu 1 304 -8 1634 189 55 32 chr15 46801468 46801665 -54578856 + MLT1A2 LTR MaLR 164 374 0 257 289 66 0 chr15 46801850 46801926 -54578595 - MIR SINE MIR -87 121 41 2481 81 0 0 chr15 46801956 46802265 -54578256 - AluY SINE Alu -2 309 1 793 208 0 8 chr15 46802298 46802428 -54578093 - FLAM_C SINE Alu -14 129 1 1263 203 48 22 chr15 46802523 46802794 -54577727 + AluJo SINE Alu 1 278 -34 414 0 0 0 chr15 46802794 46802840 -54577681 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 310 91 23 0 chr15 46803034 46803078 -54577443 + Charlie8 DNA MER1_type 1378 1422 -995 507 197 142 21 chr15 46803100 46803333 -54577188 + AluY SINE Alu 2 262 -49 180 0 0 0 chr15 46803561 46803581 -54576940 + (GGGAA)n Simple_repeat Simple_repeat 4 23 0 2104 124 10 10 chr15 46803615 46803921 -54576600 + AluSc SINE Alu 1 306 -3 298 164 16 16 chr15 46803939 46804000 -54576521 + L1MB4 LINE L1 5296 5356 -977 794 150 65 40 chr15 46804004 46804204 -54576317 + L1MB4 LINE L1 5975 6179 -1 485 153 12 0 chr15 46804213 46804298 -54576223 + L1MB8 LINE L1 6093 6178 0 1513 108 5 0 chr15 46804719 46804923 -54575598 - AluSg/x SINE Alu -1 311 107 416 161 0 16 chr15 46804923 46804985 -54575536 - AluS SINE Alu -250 62 2 2267 87 7 0 chr15 46805048 46805337 -54575184 - AluSx SINE Alu -21 291 1 26 50 0 0 chr15 46805841 46805881 -54574640 + AT_rich Low_complexity Low_complexity 1 40 0 1607 145 84 30 chr15 46806480 46806776 -54573745 + AluJo SINE Alu 1 312 0 186 318 94 12 chr15 46807244 46807329 -54573192 - MIR3 SINE MIR -114 94 3 237 119 0 0 chr15 46807680 46807722 -54572799 + (TA)n Simple_repeat Simple_repeat 2 43 0 34 42 0 0 chr15 46807783 46807831 -54572690 + AT_rich Low_complexity Low_complexity 1 48 0 1562 279 64 20 chr15 46808339 46808933 -54571588 - L1ME3A LINE L1 0 6170 5551 2019 112 3 24 chr15 46808999 46809286 -54571235 - AluSg SINE Alu -29 281 1 1340 204 11 21 chr15 46809446 46809730 -54570791 - AluJo SINE Alu -31 281 1 2154 101 7 0 chr15 46812498 46812775 -54567746 - AluSg SINE Alu -31 279 1 612 247 111 104 chr15 46812929 46813390 -54567131 - MLT1H LTR MaLR -7 542 79 3285 157 54 2 chr15 46813916 46814240 -54566281 - Tigger1 DNA MER2_type 0 2418 2052 1471 163 45 38 chr15 46814240 46814529 -54565992 - AluJo SINE Alu -10 302 12 3285 157 54 2 chr15 46814529 46814758 -54565763 - Tigger1 DNA MER2_type -366 2052 1836 361 305 141 15 chr15 46815036 46815423 -54565098 - L1ME LINE L1 -359 5807 5375 2109 106 6 37 chr15 46815671 46815993 -54564528 - AluSq SINE Alu -1 312 1 22 0 0 0 chr15 46816351 46816373 -54564148 + AT_rich Low_complexity Low_complexity 1 22 0 376 299 59 107 chr15 46816856 46817210 -54563311 - L2 LINE L2 -1 3271 2935 197 214 0 169 chr15 46817293 46817356 -54563165 - MER5B DNA MER1_type -2 176 131 787 137 183 46 chr15 46817356 46817509 -54563012 + FAM SINE Alu 2 175 0 197 214 0 169 chr15 46817509 46817534 -54562987 - MER5B DNA MER1_type -47 131 103 2013 116 0 27 chr15 46817540 46817861 -54562660 - AluJb SINE Alu 0 313 1 212 226 32 48 chr15 46817895 46817957 -54562564 + MIR SINE MIR 2 62 -200 3082 220 75 82 chr15 46818042 46818422 -54562099 - L1M4 LINE L1 -1757 4389 4008 257 27 0 0 chr15 46818422 46818459 -54562062 - AluY SINE Alu 0 302 266 2270 56 42 10 chr15 46818459 46818747 -54561774 - AluY SINE Alu -14 297 1 3082 220 75 82 chr15 46818747 46819221 -54561300 - L1M4 LINE L1 -2137 4009 3533 1307 53 0 0 chr15 46819221 46819373 -54561148 + L1PA4 LINE L1 6000 6151 -4 3082 220 75 82 chr15 46819373 46819838 -54560683 - L1M4 LINE L1 -2613 3533 3041 450 109 0 0 chr15 46819838 46819902 -54560619 - AluSc SINE Alu -9 300 237 2315 75 3 14 chr15 46820207 46820502 -54560019 + AluSc SINE Alu 2 293 -16 21 0 0 0 chr15 46820507 46820528 -54559993 + AT_rich Low_complexity Low_complexity 1 21 0 325 250 0 34 chr15 46820597 46820685 -54559836 - L2 LINE L2 -2 3311 3227 832 175 11 73 chr15 46820998 46821175 -54559346 - AluJo SINE Alu 0 302 137 25 31 0 0 chr15 46821188 46821220 -54559301 + AT_rich Low_complexity Low_complexity 1 32 0 1497 181 25 7 chr15 46821220 46821496 -54559025 - AluJb SINE Alu -26 286 6 2463 41 3 3 chr15 46821673 46821966 -54558555 + AluY SINE Alu 1 293 -18 623 273 204 14 chr15 46822088 46822304 -54558217 + MIR SINE MIR 3 259 -3 818 187 0 8 chr15 46822381 46822515 -54558006 - AluJo SINE Alu -169 133 1 2228 114 7 0 chr15 46822543 46822842 -54557679 + AluSx SINE Alu 1 301 -11 1811 119 8 0 chr15 46822924 46823177 -54557344 - AluSq SINE Alu -17 296 42 596 213 0 29 chr15 46823177 46823313 -54557208 - L1M4 LINE L1 -852 5294 5163 1201 128 10 15 chr15 46823317 46823513 -54557008 - AluSg/x SINE Alu 0 310 116 1735 193 0 0 chr15 46823530 46823825 -54556696 - AluSx SINE Alu -17 295 1 1870 127 30 23 chr15 46823841 46824008 -54556513 - AluSq SINE Alu -12 301 137 212 0 0 35 chr15 46824008 46824037 -54556484 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 2347 76 0 0 chr15 46824038 46824326 -54556195 - AluSg SINE Alu -22 288 1 2306 108 0 0 chr15 46824326 46824622 -54555899 - AluSg SINE Alu -14 296 1 1870 127 30 23 chr15 46824622 46824750 -54555771 - AluSq SINE Alu -175 138 1 2420 57 0 0 chr15 46824761 46825062 -54555459 - AluY SINE Alu 0 301 1 2915 206 58 16 chr15 46825062 46825852 -54554669 - L1M4 LINE L1 -979 5167 4345 607 204 88 0 chr15 46825865 46825978 -54554543 - FLAM_A SINE Alu -10 123 1 1994 146 0 10 chr15 46825988 46826290 -54554231 - AluJb SINE Alu -13 299 1 295 262 107 0 chr15 46826413 46826497 -54554024 + Charlie2 DNA MER1_type 1 93 -2689 2303 109 6 3 chr15 46826554 46826866 -54553655 - AluSq SINE Alu 0 313 1 1149 183 9 14 chr15 46827504 46827723 -54552798 - AluJb SINE Alu -9 303 86 2328 66 0 0 chr15 46828020 46828309 -54552212 - AluY SINE Alu -6 305 17 1746 185 17 0 chr15 46828311 46828613 -54551908 - 7SLRNA srpRNA srpRNA -13 307 1 2468 81 0 0 chr15 46828767 46829076 -54551445 - AluSq SINE Alu 0 313 5 188 320 0 20 chr15 46829276 46829326 -54551195 + L2 LINE L2 3136 3184 -88 593 233 82 24 chr15 46829593 46829899 -54550622 + L1ME1 LINE L1 5863 6333 -1 22 56 0 0 chr15 46830668 46830704 -54549817 + GC_rich Low_complexity Low_complexity 1 36 0 2098 94 24 3 chr15 46832034 46832332 -54548189 - AluSx SINE Alu -8 304 1 1515 194 110 59 chr15 46832340 46832847 -54547674 - L1MC5 LINE L1 -51 7910 7370 2010 131 7 0 chr15 46832847 46833153 -54547368 - AluSx SINE Alu -4 308 1 1515 194 110 59 chr15 46833153 46833207 -54547314 - L1MC5 LINE L1 -591 7370 7320 1058 102 0 0 chr15 46833219 46833356 -54547165 + AluSg/x SINE Alu 158 294 -16 1543 117 74 27 chr15 46833378 46833635 -54546886 + AluSq SINE Alu 25 293 -20 1939 103 53 13 chr15 46833759 46834060 -54546461 - AluSq SINE Alu 0 313 1 1839 127 49 18 chr15 46834329 46834613 -54545908 + AluJb SINE Alu 5 297 -15 1819 86 9 0 chr15 46834920 46835152 -54545369 - AluSq SINE Alu -14 299 66 2126 91 31 0 chr15 46835321 46835607 -54544914 - AluSq SINE Alu -12 301 7 261 0 0 0 chr15 46836219 46836248 -54544273 + (TG)n Simple_repeat Simple_repeat 2 30 0 2358 89 0 0 chr15 46836249 46836541 -54543980 - AluSg SINE Alu -17 293 2 311 239 161 31 chr15 46836542 46836672 -54543849 - MIR SINE MIR -55 207 61 1406 170 3 95 chr15 46836924 46837241 -54543280 - AluSx SINE Alu -11 301 14 2262 113 7 0 chr15 46837249 46837559 -54542962 - AluSx SINE Alu 0 312 1 1846 182 0 0 chr15 46837678 46837974 -54542547 + AluSx SINE Alu 1 296 -16 463 31 31 0 chr15 46837974 46838039 -54542482 + (TA)n Simple_repeat Simple_repeat 1 67 0 1363 209 6 62 chr15 46838160 46838342 -54542179 - AluJb SINE Alu -10 302 144 2352 77 0 3 chr15 46838342 46838629 -54541892 + AluSc SINE Alu 1 286 -23 1363 209 6 62 chr15 46838629 46838766 -54541755 - AluJb SINE Alu -168 144 1 258 156 0 0 chr15 46838949 46838994 -54541527 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 2338 93 3 6 chr15 46839244 46839556 -54540965 - AluY SINE Alu 0 311 1 1578 252 45 49 chr15 46839643 46839748 -54540773 - L1ME LINE L1 -5386 684 580 2310 114 0 0 chr15 46839748 46840055 -54540466 - AluSg SINE Alu -3 307 1 1578 252 45 49 chr15 46840055 46840106 -54540415 - L1ME LINE L1 -5490 580 530 1480 202 39 58 chr15 46840106 46840487 -54540034 + MLT1A2 LTR MaLR 1 374 0 1578 252 45 49 chr15 46840487 46840936 -54539585 - L1ME LINE L1 -5540 530 81 827 153 0 0 chr15 46840959 46841077 -54539444 - FLAM_C SINE Alu -25 118 1 372 235 12 0 chr15 46841079 46841160 -54539361 - L1ME LINE L1 -5977 93 12 902 258 37 12 chr15 46841414 46841658 -54538863 - MIR SINE MIR 0 262 13 2259 120 0 0 chr15 46842152 46842453 -54538068 - AluSq SINE Alu -12 301 1 1087 243 53 48 chr15 46842651 46843066 -54537455 + L1M1 LINE L1 2822 3238 -4327 1091 112 0 0 chr15 46843082 46843225 -54537296 + AluSq/x SINE Alu 1 143 -170 2242 121 0 0 chr15 46843227 46843525 -54536996 + AluSx SINE Alu 3 300 -12 4880 100 25 21 chr15 46843525 46844242 -54536279 + L1PB1 LINE L1 5432 6151 0 5027 127 58 57 chr15 46844245 46844588 -54535933 - Tigger3b DNA MER2_type -2070 958 617 2208 101 37 0 chr15 46844588 46844886 -54535635 - AluSx SINE Alu -3 309 1 5027 127 58 57 chr15 46844886 46845158 -54535363 - Tigger3b DNA MER2_type -2411 617 347 2173 84 17 17 chr15 46845158 46845457 -54535064 + AluY SINE Alu 1 299 -12 5027 127 58 57 chr15 46845457 46845698 -54534823 - Tigger3b DNA MER2_type -2681 347 97 1565 174 37 37 chr15 46845698 46845992 -54534529 - AluJo SINE Alu -18 294 1 5027 127 58 57 chr15 46845992 46846088 -54534433 - Tigger3b DNA MER2_type -2931 97 3 2371 119 54 33 chr15 46846090 46846519 -54534002 + L1MA8 LINE L1 5786 6223 -68 478 230 0 0 chr15 46846534 46846621 -54533900 - AluJ/FLAM SINE Alu -224 88 2 234 128 0 0 chr15 46846679 46846718 -54533803 + (T)n Simple_repeat Simple_repeat 1 39 0 3830 114 13 2 chr15 46846720 46847264 -54533257 - MER41B LTR ERV1 -84 551 2 12122 98 37 26 chr15 46847265 46848057 -54532464 - MER41B-int LTR ERV1 -2 5944 5162 1992 138 27 3 chr15 46848057 46848354 -54532167 - AluSx SINE Alu -8 304 1 12122 98 37 26 chr15 46848354 46848706 -54531815 - MER41B-int LTR ERV1 -784 5162 4815 2095 134 3 7 chr15 46848706 46849013 -54531508 + AluSq SINE Alu 1 306 -7 12122 98 37 26 chr15 46849013 46849769 -54530752 - MER41B-int LTR ERV1 -1131 4815 2393 1968 119 3 20 chr15 46849795 46850090 -54530431 - AluSx SINE Alu -22 290 1 1336 105 90 0 chr15 46850098 46850298 -54530223 - MER41A-int LTR ERV1 -3098 2848 2631 559 152 0 11 chr15 46850291 46850383 -54530138 - MER41A-int LTR ERV1 -3442 2504 2414 * 632 115 23 0 chr15 46850377 46850464 -54530057 - MER41A-int LTR ERV1 -5857 89 1 1037 136 0 0 chr15 46850464 46850619 -54529902 - MER41A LTR ERV1 0 554 400 2186 109 10 0 chr15 46850699 46850992 -54529529 - AluSp SINE Alu -17 296 1 361 167 12 12 chr15 46850992 46851076 -54529445 + CT-rich Low_complexity Low_complexity 3 86 0 1403 153 0 18 chr15 46851082 46851310 -54529211 - AluJb SINE Alu -39 273 50 829 270 104 48 chr15 46851310 46851498 -54529023 - L1M4 LINE L1 -2890 3256 3080 2093 116 7 10 chr15 46851498 46851801 -54528720 - AluSx SINE Alu -10 302 1 829 270 104 48 chr15 46851801 46852103 -54528418 - L1M4 LINE L1 -3066 3080 2796 1797 152 35 0 chr15 46852103 46852392 -54528129 - AluSq SINE Alu -14 299 1 829 270 104 48 chr15 46852392 46852536 -54527985 - L1M4 LINE L1 -3350 2796 2662 1618 174 24 17 chr15 46852536 46852829 -54527692 - AluJb SINE Alu -17 295 1 829 270 104 48 chr15 46852829 46853030 -54527491 - L1M4 LINE L1 -3484 2662 2372 2335 77 0 39 chr15 46853185 46853496 -54527025 - AluSc SINE Alu -10 299 1 1578 192 10 19 chr15 46853518 46853830 -54526691 - AluJb SINE Alu -3 309 1 2178 98 14 3 chr15 46854088 46854383 -54526138 + AluSp SINE Alu 1 298 -15 1907 104 97 0 chr15 46855162 46855441 -54525080 - AluY SINE Alu -5 306 1 1010 125 0 0 chr15 46855441 46855577 -54524944 - AluSq/x SINE Alu -175 137 2 2226 105 7 3 chr15 46856239 46856535 -54523986 + AluSq SINE Alu 1 297 -16 291 276 35 47 chr15 46856537 46856707 -54523814 - L1ME LINE L1 -307 5814 5647 374 148 0 0 chr15 46856863 46856917 -54523604 + Alu SINE Alu 1 54 -246 1326 120 0 11 chr15 46856918 46857109 -54523412 - AluSx SINE Alu -89 223 35 30 83 0 0 chr15 46857152 46857224 -54523297 + AT_rich Low_complexity Low_complexity 1 72 0 214 272 99 12 chr15 46857394 46857475 -54523046 - MIR SINE MIR -95 113 26 2231 108 10 0 chr15 46857549 46857845 -54522676 + AluSx SINE Alu 1 299 -13 2243 99 17 0 chr15 46858295 46858597 -54521924 - AluY SINE Alu -4 307 1 529 279 80 42 chr15 46858606 46858918 -54521603 - L1ME LINE L1 -302 5819 5496 1645 156 25 7 chr15 46858927 46859202 -54521319 - AluJb SINE Alu -15 297 18 2413 77 0 3 chr15 46859210 46859508 -54521013 + AluY SINE Alu 2 298 -13 22 80 0 0 chr15 46859594 46859644 -54520877 + AT_rich Low_complexity Low_complexity 1 50 0 2336 81 3 0 chr15 46860000 46860285 -54520236 - AluSx SINE Alu -26 286 1 1541 162 9 115 chr15 46860691 46861031 -54519490 + AluJb SINE Alu 1 304 -8 997 230 32 81 chr15 46861041 46861305 -54519216 - L1M2 LINE L1 -4250 1966 1691 2017 134 20 13 chr15 46861305 46861611 -54518910 - AluSg SINE Alu -2 308 1 997 230 32 81 chr15 46861611 46861863 -54518658 - L1M2 LINE L1 -4525 1691 1371 2138 133 3 0 chr15 46861864 46862173 -54518348 - AluSg SINE Alu 0 310 1 783 274 91 58 chr15 46862179 46862299 -54518222 - L1ME LINE L1 -5054 1151 1036 2233 100 3 13 chr15 46862299 46862610 -54517911 - AluY SINE Alu -3 308 1 783 274 91 58 chr15 46862610 46862865 -54517656 - L1ME LINE L1 -5169 1036 791 2254 92 14 3 chr15 46862865 46863159 -54517362 - AluSx SINE Alu -15 297 1 783 274 91 58 chr15 46863159 46863838 -54516683 - L1ME LINE L1 -5414 791 102 310 273 0 0 chr15 46863838 46863904 -54516617 - MER77 LTR ERV1 0 605 540 356 213 13 0 chr15 46863951 46864026 -54516495 - L1MEc LINE L1 -2154 4061 3986 848 141 16 0 chr15 46864027 46864155 -54516366 - BC200 scRNA scRNA -67 133 4 1556 154 62 41 chr15 46864155 46864447 -54516074 - AluJb SINE Alu -14 298 1 628 200 9 0 chr15 46864478 46864588 -54515933 - FLAM_A SINE Alu -12 130 20 547 249 37 6 chr15 46864591 46864784 -54515737 - L1MEc LINE L1 -2459 3756 3556 343 121 0 0 chr15 46864784 46864843 -54515678 - Alu SINE Alu -3 299 247 560 189 60 31 chr15 46864858 46864968 -54515553 - L1MEc LINE L1 -2886 3329 3224 2274 107 13 0 chr15 46864968 46865276 -54515245 - AluSx SINE Alu 0 312 1 560 189 60 31 chr15 46865276 46865409 -54515112 - L1MEc LINE L1 -2991 3224 3081 203 0 0 36 chr15 46865411 46865439 -54515082 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1292 103 16 11 chr15 46865446 46865630 -54514891 - AluSc SINE Alu -35 274 90 1241 154 107 74 chr15 46865664 46865963 -54514558 - AluSg SINE Alu 0 310 2 1125 296 44 52 chr15 46865994 46866120 -54514401 - L1MEc LINE L1 -5453 943 817 1704 186 7 0 chr15 46866120 46866421 -54514100 - AluJb SINE Alu -9 303 1 1125 296 44 52 chr15 46866421 46866607 -54513914 - L1MEc LINE L1 -5579 817 631 2159 140 0 0 chr15 46866607 46866915 -54513606 - AluSx SINE Alu -4 308 1 1125 296 44 52 chr15 46866915 46867106 -54513415 - L1MEc LINE L1 -5765 631 440 2355 94 10 3 chr15 46867106 46867415 -54513106 - AluSx SINE Alu -1 311 1 1125 296 44 52 chr15 46867415 46867643 -54512878 - L1MEc LINE L1 -5956 440 216 732 213 10 55 chr15 46867657 46867859 -54512662 - L1ME1 LINE L1 -179 5987 5795 1325 211 23 20 chr15 46867860 46868163 -54512358 - AluJo SINE Alu 0 312 9 30 27 0 0 chr15 46868313 46868350 -54512171 + AT_rich Low_complexity Low_complexity 1 37 0 386 260 65 7 chr15 46868728 46868912 -54511609 - L1MEc LINE L1 -3643 2572 2379 352 190 66 7 chr15 46868973 46869110 -54511411 - L1MEc LINE L1 -4159 2237 2093 704 176 197 0 chr15 46869110 46869252 -54511269 + MER2 DNA MER2_type 1 170 -175 816 153 38 8 chr15 46869253 46869384 -54511137 + AluJo SINE Alu 2 136 -176 768 210 49 6 chr15 46869395 46869557 -54510964 + MER2 DNA MER2_type 176 344 -1 2104 113 13 3 chr15 46869562 46869864 -54510657 - AluY SINE Alu -6 305 1 2162 121 20 0 chr15 46870020 46870326 -54510195 - AluSq SINE Alu -1 312 1 21 36 0 0 chr15 46870755 46870783 -54509738 + AT_rich Low_complexity Low_complexity 1 28 0 2181 100 7 0 chr15 46871548 46871837 -54508684 - AluSg SINE Alu -19 291 1 818 236 103 15 chr15 46872002 46872084 -54508437 + MER58A DNA MER1_type 1 74 -2346 2411 127 16 26 chr15 46872084 46872463 -54508058 - THE1C LTR MaLR 0 375 1 818 236 103 15 chr15 46872463 46872583 -54507938 + MER58A DNA MER1_type 74 221 -3 2229 111 7 0 chr15 46872831 46873129 -54507392 - AluSx SINE Alu -12 300 1 688 251 145 60 chr15 46873192 46873790 -54506731 - L2 LINE L2 -82 3231 2596 1330 212 26 55 chr15 46873823 46874168 -54506353 - MLT1B LTR MaLR 0 390 56 286 235 284 0 chr15 46874168 46874249 -54506272 - MLT1B LTR MaLR -361 106 3 1754 137 6 76 chr15 46874261 46874576 -54505945 + AluJb SINE Alu 1 293 -19 1150 154 166 24 chr15 46875027 46875274 -54505247 + AluJo SINE Alu 23 304 -8 23 78 0 0 chr15 46875582 46875633 -54504888 + AT_rich Low_complexity Low_complexity 1 51 0 1916 128 25 0 chr15 46875867 46876141 -54504380 + AluSx SINE Alu 1 281 -31 270 0 0 0 chr15 46876141 46876171 -54504350 + (CATA)n Simple_repeat Simple_repeat 1 30 0 305 264 212 35 chr15 46876353 46876529 -54503992 - L2 LINE L2 -337 2977 2833 2209 89 3 7 chr15 46876529 46876831 -54503690 - AluSc SINE Alu -8 301 1 305 264 212 35 chr15 46876831 46877051 -54503470 - L2 LINE L2 -481 2833 2511 305 314 0 38 chr15 46877651 46877810 -54502711 + C-rich Low_complexity Low_complexity 4 156 0 2511 71 0 3 chr15 46879129 46879438 -54501083 - AluSg SINE Alu -2 308 1 932 102 8 0 chr15 46879479 46879606 -54500915 + L1MA1 LINE L1 6166 6293 -9 2399 89 3 0 chr15 46879839 46880141 -54500380 + AluSp SINE Alu 2 304 -9 2194 114 3 0 chr15 46880839 46881136 -54499385 + AluSg SINE Alu 2 299 -11 21 0 0 0 chr15 46881266 46881287 -54499234 + AT_rich Low_complexity Low_complexity 1 21 0 336 203 0 0 chr15 46881819 46881883 -54498638 - MIR3 SINE MIR -25 183 120 2859 3 0 3 chr15 46881887 46882196 -54498325 + AluYa8 SINE Alu 1 308 -2 23 68 0 0 chr15 46882453 46882497 -54498024 + AT_rich Low_complexity Low_complexity 1 44 0 2420 59 3 0 chr15 46882906 46883195 -54497326 - AluY SINE Alu -21 290 1 2343 75 10 0 chr15 46884204 46884496 -54496025 + AluSg SINE Alu 1 295 -15 2166 103 3 13 chr15 46884530 46884831 -54495690 + AluY SINE Alu 1 298 -13 2228 90 13 19 chr15 46885288 46885600 -54494921 + AluSg SINE Alu 1 310 0 259 114 0 0 chr15 46886042 46886077 -54494444 + tRNA-Met-e tRNA tRNA 1 35 -40 2415 72 0 7 chr15 46886985 46887290 -54493231 - AluSq SINE Alu -10 303 1 232 87 0 43 chr15 46888406 46888452 -54492069 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 2218 92 3 23 chr15 46888458 46888762 -54491759 - AluSg SINE Alu -12 298 1 2476 68 0 0 chr15 46889047 46889343 -54491178 - AluSg SINE Alu -14 296 1 1074 113 0 0 chr15 46889344 46889486 -54491035 - AluSq/x SINE Alu -171 142 1 2256 110 10 0 chr15 46890273 46890573 -54489948 - AluY SINE Alu -8 303 1 1503 114 82 28 chr15 46891018 46891273 -54489248 - AluSq SINE Alu -20 293 25 2159 108 3 3 chr15 46891295 46891591 -54488930 - AluSx SINE Alu -16 296 1 634 118 191 18 chr15 46891598 46891708 -54488813 - FLAM_C SINE Alu -4 139 11 2186 89 10 0 chr15 46891729 46892022 -54488499 - AluSp SINE Alu -15 298 3 273 329 119 19 chr15 46892124 46892334 -54488187 - L2 LINE L2 -527 2787 2557 749 130 113 0 chr15 46893039 46893154 -54487367 + AluSg1 SINE Alu 2 129 -180 1605 151 16 30 chr15 46893158 46893462 -54487059 + AluSx SINE Alu 1 300 -12 849 132 35 0 chr15 46893653 46893767 -54486754 + FLAM_C SINE Alu 1 118 -15 2311 63 3 72 chr15 46894174 46894492 -54486029 - AluSc SINE Alu -13 296 1 22 70 0 0 chr15 46894629 46894672 -54485849 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr15 46895145 46895175 -54485346 + AT_rich Low_complexity Low_complexity 1 30 0 769 174 16 0 chr15 46895448 46895569 -54484952 - FAM SINE Alu -19 166 44 318 50 0 0 chr15 46895700 46895740 -54484781 + (TA)n Simple_repeat Simple_repeat 2 41 0 2581 66 0 0 chr15 46895740 46896043 -54484478 - AluSg SINE Alu -7 303 1 1102 60 8 0 chr15 46896077 46896211 -54484310 + L1MA1 LINE L1 6159 6293 -9 2399 89 3 0 chr15 46896444 46896746 -54483775 + AluSp SINE Alu 2 304 -9 2194 114 3 0 chr15 46897444 46897741 -54482780 + AluSg SINE Alu 2 299 -11 21 0 0 0 chr15 46897871 46897892 -54482629 + AT_rich Low_complexity Low_complexity 1 21 0 336 203 0 0 chr15 46898424 46898488 -54482033 - MIR3 SINE MIR -25 183 120 2894 3 0 0 chr15 46898492 46898800 -54481721 + AluYa8 SINE Alu 1 308 -2 23 68 0 0 chr15 46899057 46899101 -54481420 + AT_rich Low_complexity Low_complexity 1 44 0 2420 59 3 0 chr15 46899510 46899799 -54480722 - AluY SINE Alu -21 290 1 2343 75 10 0 chr15 46900808 46901100 -54479421 + AluSg SINE Alu 1 295 -15 2166 103 3 13 chr15 46901134 46901435 -54479086 + AluY SINE Alu 1 298 -13 2228 90 13 19 chr15 46901892 46902204 -54478317 + AluSg SINE Alu 1 310 0 259 114 0 0 chr15 46902646 46902681 -54477840 + tRNA-Met-e tRNA tRNA 1 35 -40 1444 157 0 39 chr15 46903705 46904010 -54476511 - AluY SINE Alu -18 293 1 1665 81 0 18 chr15 46904010 46904231 -54476290 - AluSg/x SINE Alu -11 299 83 2526 51 0 0 chr15 46904635 46904931 -54475590 + AluY SINE Alu 1 296 -15 197 279 47 81 chr15 46905192 46905278 -54475243 + MIR3 SINE MIR 103 185 -23 718 164 0 0 chr15 46905297 46905413 -54475108 - FLAM_C SINE Alu -17 116 1 2386 77 13 3 chr15 46905638 46905938 -54474583 - AluY SINE Alu -8 303 1 324 140 105 0 chr15 46906034 46906091 -54474430 + MER5A DNA MER1_type 9 71 -118 734 181 0 0 chr15 46906097 46906213 -54474308 + FLAM_C SINE Alu 1 116 -17 647 179 103 0 chr15 46906234 46906351 -54474170 - MER5A DNA MER1_type 0 189 61 1798 162 3 25 chr15 46906360 46906674 -54473847 - AluJb SINE Alu -1 311 5 2218 102 0 3 chr15 46906686 46906979 -54473542 - AluSc SINE Alu -17 292 1 2091 90 4 0 chr15 46907005 46907283 -54473238 - AluSp SINE Alu -1 312 34 690 181 0 7 chr15 46907443 46907592 -54472929 - L1MB8 LINE L1 0 6178 6031 1704 179 25 0 chr15 46907594 46907912 -54472609 + L1MC1 LINE L1 6008 6333 0 2407 100 0 0 chr15 46907922 46908231 -54472290 + AluSx SINE Alu 3 311 -1 342 327 157 18 chr15 46908357 46908574 -54471947 - MIR SINE MIR -11 251 5 248 204 133 10 chr15 46908931 46909029 -54471492 - L1MB8 LINE L1 -2051 5757 5648 262 342 93 0 chr15 46909101 46909262 -54471259 + L1MC4 LINE L1 6743 6918 -1124 2238 124 0 9 chr15 46909266 46909581 -54470940 - AluSx SINE Alu 0 312 1 975 98 0 0 chr15 46909581 46909704 -54470817 - AluSq/x SINE Alu -177 136 14 716 252 93 70 chr15 46909710 46909887 -54470634 + L1MC4 LINE L1 6936 7107 -935 2191 105 6 16 chr15 46909887 46910201 -54470320 + AluSq SINE Alu 1 311 -2 716 252 93 70 chr15 46910201 46910570 -54469951 + L1MC4 LINE L1 7107 7495 -547 239 313 0 60 chr15 46910626 46910709 -54469812 + MIR3 SINE MIR 82 159 -49 362 225 0 0 chr15 46911026 46911106 -54469415 - MER116 DNA Mariner 0 80 1 1909 123 82 0 chr15 46911638 46911906 -54468615 + AluSg SINE Alu 1 290 -20 2371 82 3 0 chr15 46912432 46912725 -54467796 + AluY SINE Alu 1 294 -17 643 235 0 22 chr15 46912735 46912871 -54467650 + FLAM_C SINE Alu 1 133 0 226 120 0 20 chr15 46913539 46913589 -54466932 - LTR66 LTR ERVL -164 446 398 2335 106 0 3 chr15 46915050 46915353 -54465168 + AluSx SINE Alu 1 302 -10 1898 148 13 0 chr15 46915551 46915856 -54464665 - AluSc SINE Alu 0 309 1 30 0 0 24 chr15 46915928 46915953 -54464568 + AT_rich Low_complexity Low_complexity 1 26 -14 2131 125 0 0 chr15 46915953 46916242 -54464279 - AluSx SINE Alu -23 289 1 30 0 0 24 chr15 46916242 46916257 -54464264 + AT_rich Low_complexity Low_complexity 26 40 0 1084 176 68 15 chr15 46916257 46916462 -54464059 + AluJo SINE Alu 85 300 -12 575 76 19 95 chr15 46916483 46916561 -54463960 + AluJb SINE Alu 38 108 -204 1996 142 3 0 chr15 46916561 46916856 -54463665 + AluSx SINE Alu 1 296 -16 575 76 19 95 chr15 46916856 46916882 -54463639 + AluJb SINE Alu 108 134 -178 2278 103 0 13 chr15 46917817 46918117 -54462404 - AluSx SINE Alu -15 297 2 491 176 90 95 chr15 46918302 46918364 -54462157 - MER5A DNA MER1_type -1 188 127 1862 181 3 7 chr15 46918364 46918673 -54461848 + AluJo SINE Alu 1 308 -4 491 176 90 95 chr15 46918673 46918728 -54461793 - MER5A DNA MER1_type -62 127 73 2117 119 3 0 chr15 46918728 46919021 -54461500 - AluSx SINE Alu -18 294 1 491 176 90 95 chr15 46919021 46919088 -54461433 - MER5A DNA MER1_type -116 73 4 1978 109 72 0 chr15 46919607 46919883 -54460638 - AluSq SINE Alu -17 296 1 2136 114 10 7 chr15 46920026 46920325 -54460196 - AluSx SINE Alu -11 301 2 59 38 0 0 chr15 46920637 46920717 -54459804 + AT_rich Low_complexity Low_complexity 1 80 0 2006 112 14 3 chr15 46921103 46921388 -54459133 + AluSx SINE Alu 1 288 -24 2525 81 7 0 chr15 46921554 46921864 -54458657 - AluSp SINE Alu -1 312 1 39 0 0 0 chr15 46922041 46922080 -54458441 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr15 46922448 46922473 -54458048 + AT_rich Low_complexity Low_complexity 1 25 0 2391 108 0 0 chr15 46922533 46922840 -54457681 + AluSp SINE Alu 2 308 -5 2312 111 0 0 chr15 46923446 46923744 -54456777 - AluSx SINE Alu -14 298 1 1020 110 12 61 chr15 46923810 46923973 -54456548 - AluSg/x SINE Alu -21 291 137 294 246 82 62 chr15 46924021 46924216 -54456305 - AluSq SINE Alu -103 200 2 506 173 75 8 chr15 46924252 46924385 -54456136 + AluSq/x SINE Alu 2 143 -170 1941 124 3 13 chr15 46924619 46924925 -54455596 - AluSg SINE Alu -7 303 1 2348 84 0 0 chr15 46924931 46925229 -54455292 - AluY SINE Alu -1 310 13 2275 107 3 3 chr15 46925277 46925587 -54454934 - AluY SINE Alu -1 310 1 22 35 0 0 chr15 46925631 46925660 -54454861 + AT_rich Low_complexity Low_complexity 1 29 0 2031 121 0 21 chr15 46926269 46926586 -54453935 - AluSx SINE Alu 0 311 1 359 365 84 0 chr15 46926672 46926910 -54453611 + L1MC4a LINE L1 5476 5733 -2075 308 295 67 0 chr15 46926996 46927101 -54453420 + L1MC4a LINE L1 5852 5963 -1845 1946 139 36 0 chr15 46928300 46928601 -54451920 - AluSx SINE Alu 0 312 1 205 208 26 0 chr15 46928963 46929040 -54451481 + (TA)n Simple_repeat Simple_repeat 2 80 0 267 152 0 0 chr15 46929248 46929294 -54451227 + (TATG)n Simple_repeat Simple_repeat 3 48 0 1757 171 31 0 chr15 46929496 46929783 -54450738 + AluJb SINE Alu 1 296 -16 977 153 19 6 chr15 46929783 46929940 -54450581 + AluJo/FRAM SINE Alu 134 292 -20 2154 126 7 0 chr15 46930461 46930763 -54449758 + AluSx SINE Alu 1 304 -8 338 264 80 16 chr15 46930808 46930933 -54449588 - MIR SINE MIR -26 236 104 301 286 43 36 chr15 46930945 46931085 -54449436 + L1ME4a LINE L1 5270 5410 -2398 1526 204 0 0 chr15 46931085 46931354 -54449167 + AluJb SINE Alu 36 304 -8 290 245 41 10 chr15 46931440 46931538 -54448983 + L1ME4a LINE L1 5586 5686 -435 482 298 128 25 chr15 46931540 46931899 -54448622 + L1ME4a LINE L1 5721 6116 -5 1646 168 20 14 chr15 46932018 46932310 -54448211 + AluJo SINE Alu 2 295 -17 1068 297 202 9 chr15 46932753 46933506 -54447015 + L2 LINE L2 2367 3306 -7 317 295 31 61 chr15 46933602 46933863 -54446658 + L1ME4a LINE L1 5869 6121 0 645 228 148 10 chr15 46934252 46934555 -54445966 - MER20B DNA MER1_type 0 783 439 1024 200 120 47 chr15 46934922 46935197 -54445324 + AluJo SINE Alu 1 295 -7 945 295 97 8 chr15 46935588 46935978 -54444543 - MER20B DNA MER1_type -291 492 68 189 107 0 0 chr15 46936805 46936833 -54443688 + (T)n Simple_repeat Simple_repeat 1 28 0 2293 96 7 0 chr15 46937189 46937491 -54443030 - AluSc SINE Alu -5 304 1 2276 124 0 0 chr15 46937712 46938019 -54442502 - AluSx SINE Alu -5 307 1 22 0 0 0 chr15 46938160 46938182 -54442339 + AT_rich Low_complexity Low_complexity 1 22 0 1265 174 71 123 chr15 46938312 46938565 -54441956 - Charlie1b DNA MER1_type -2238 523 312 2091 123 3 0 chr15 46938565 46938874 -54441647 - AluSq SINE Alu 0 310 1 1265 174 71 123 chr15 46938874 46939171 -54441350 - Charlie1b DNA MER1_type -2449 312 1 24 32 0 0 chr15 46939182 46939213 -54441308 + AT_rich Low_complexity Low_complexity 1 31 0 1899 31 9 4 chr15 46939440 46939666 -54440855 - AluY SINE Alu -2 309 83 2219 101 0 13 chr15 46939668 46939976 -54440545 - AluSp SINE Alu -9 304 1 1544 94 21 39 chr15 46940200 46940434 -54440087 + MER30 DNA MER1_type 1 230 0 28 71 0 0 chr15 46940912 46940968 -54439553 + AT_rich Low_complexity Low_complexity 1 56 0 1967 153 0 7 chr15 46941103 46941410 -54439111 + AluJb SINE Alu 1 305 -7 1787 160 44 15 chr15 46941657 46941995 -54438526 + L1PB4 LINE L1 5802 6149 -7 2304 60 0 0 chr15 46942009 46942306 -54438215 - AluY SINE Alu 0 311 15 1340 185 10 36 chr15 46942650 46942952 -54437569 + AluJo SINE Alu 1 294 -18 1132 119 0 6 chr15 46943093 46943253 -54437268 - AluSq SINE Alu -19 294 136 1848 129 56 3 chr15 46943255 46943421 -54437100 - AluSx SINE Alu -11 301 112 287 24 0 24 chr15 46943421 46943462 -54437059 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1848 129 56 3 chr15 46943462 46943581 -54436940 - AluSx SINE Alu -200 112 1 685 166 53 152 chr15 46943598 46943672 -54436849 - L1MB7 LINE L1 -11 6173 6093 1595 151 0 9 chr15 46943672 46943904 -54436617 + AluSx SINE Alu 64 293 -19 685 166 53 152 chr15 46943904 46944112 -54436409 - L1MB7 LINE L1 -91 6093 5919 1760 119 0 0 chr15 46944685 46944921 -54435600 - AluSq SINE Alu -23 290 55 1492 137 26 36 chr15 46945398 46945704 -54434817 - AluSq SINE Alu -10 303 1 2232 117 7 7 chr15 46945901 46946209 -54434312 - AluSx SINE Alu -4 308 1 21 0 0 0 chr15 46946886 46946907 -54433614 + AT_rich Low_complexity Low_complexity 1 21 0 2270 93 3 7 chr15 46947068 46947370 -54433151 - AluSc SINE Alu -7 302 2 27 29 0 0 chr15 46948173 46948207 -54432314 + AT_rich Low_complexity Low_complexity 1 34 0 1320 184 0 0 chr15 46948287 46948499 -54432022 + AluJb SINE Alu 86 297 -15 22 0 0 0 chr15 46950949 46950971 -54429550 + AT_rich Low_complexity Low_complexity 1 22 0 2305 108 16 0 chr15 46952614 46952921 -54427600 - AluSx SINE Alu 0 312 1 221 272 99 12 chr15 46952995 46953076 -54427445 + MIR SINE MIR 26 113 -95 30 83 0 0 chr15 46953251 46953323 -54427198 + AT_rich Low_complexity Low_complexity 1 72 0 1330 120 0 11 chr15 46953366 46953557 -54426964 + AluSx SINE Alu 35 223 -89 356 148 0 0 chr15 46953558 46953612 -54426909 - Alu SINE Alu -248 54 1 271 259 32 51 chr15 46953771 46953929 -54426592 + L1ME4a LINE L1 5650 5804 -317 2044 125 7 7 chr15 46953940 46954237 -54426284 - AluSq SINE Alu -16 297 1 21 0 0 0 chr15 46954608 46954629 -54425892 + AT_rich Low_complexity Low_complexity 1 21 0 1613 129 0 21 chr15 46954681 46954921 -54425600 - AluSx SINE Alu -77 235 1 259 261 68 0 chr15 46955453 46955541 -54424980 - L1ME LINE L1 -412 5709 5616 28 48 0 0 chr15 46955588 46955630 -54424891 + AT_rich Low_complexity Low_complexity 1 42 0 347 181 105 38 chr15 46955700 46955805 -54424716 + L1ME4a LINE L1 5977 6088 -33 2250 134 0 0 chr15 46955811 46956118 -54424403 - AluSx SINE Alu -5 307 1 23 33 0 0 chr15 46956125 46956155 -54424366 + AT_rich Low_complexity Low_complexity 1 30 0 516 313 138 67 chr15 46956446 46956787 -54423734 + L2 LINE L2 2216 2531 -741 1723 162 13 16 chr15 46956787 46957096 -54423425 - AluJb SINE Alu -4 308 1 516 313 138 67 chr15 46957096 46957592 -54422929 + L2 LINE L2 2531 3158 -114 2490 45 0 19 chr15 46957592 46957900 -54422621 - AluY SINE Alu -9 302 1 516 313 138 67 chr15 46957900 46958024 -54422497 + L2 LINE L2 3158 3272 0 2407 65 3 3 chr15 46958876 46959168 -54421353 - AluSq SINE Alu -21 292 1 2365 88 7 3 chr15 46960136 46960442 -54420079 - AluSp SINE Alu -6 307 1 256 275 69 4 chr15 46960472 46960595 -54419926 - MIR SINE MIR -6 202 72 2006 130 14 0 chr15 46960672 46960957 -54419564 - AluSx SINE Alu -23 289 1 1624 186 6 38 chr15 46961042 46961231 -54419290 - AluJo SINE Alu 0 312 135 2305 91 0 10 chr15 46961231 46961529 -54418992 - AluSc SINE Alu -14 295 1 1624 186 6 38 chr15 46961529 46961657 -54418864 - AluJo SINE Alu -177 135 5 315 313 17 26 chr15 46961965 46962080 -54418441 - L1ME4a LINE L1 -222 5899 5786 2215 96 3 3 chr15 46962086 46962378 -54418143 - AluSg SINE Alu -18 292 1 22 35 0 0 chr15 46962389 46962418 -54418103 + AT_rich Low_complexity Low_complexity 1 29 0 3168 129 17 15 chr15 46962419 46963096 -54417425 + L1M2 LINE L1 5130 5809 -482 2115 138 7 0 chr15 46963101 46963399 -54417122 - AluSx SINE Alu -12 300 1 747 188 83 0 chr15 46963410 46963543 -54416978 - FRAM SINE Alu -14 162 19 2354 83 3 13 chr15 46963919 46964233 -54416288 + AluY SINE Alu 1 311 0 317 0 70 0 chr15 46964954 46964997 -54415524 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2232 82 3 40 chr15 46965050 46965354 -54415167 - AluSx SINE Alu -19 293 1 2417 83 0 10 chr15 46967957 46968269 -54412252 - AluY SINE Alu -2 309 1 2076 111 3 49 chr15 46968274 46968441 -54412080 - AluSx SINE Alu -19 293 145 2373 84 3 0 chr15 46968441 46968737 -54411784 - AluSx SINE Alu -15 297 1 2076 111 3 49 chr15 46968737 46968876 -54411645 - AluSx SINE Alu -167 145 1 1316 191 0 4 chr15 46969045 46969270 -54411251 + AluJb SINE Alu 85 308 -4 654 182 78 52 chr15 46969478 46969632 -54410889 + FRAM SINE Alu 1 158 -8 281 260 154 16 chr15 46970140 46970263 -54410258 - MIR3 SINE MIR -58 150 11 21 71 0 0 chr15 46970739 46970781 -54409740 + AT_rich Low_complexity Low_complexity 1 42 0 2306 100 0 3 chr15 46970888 46971189 -54409332 + AluSg SINE Alu 1 300 -10 2275 113 0 19 chr15 46971269 46971587 -54408934 + AluSx SINE Alu 1 312 0 719 186 0 8 chr15 46971595 46971719 -54408802 + FLAM_C SINE Alu 1 123 -20 1021 169 46 18 chr15 46971736 46971955 -54408566 + L1PB4 LINE L1 5932 6156 0 534 246 56 15 chr15 46971980 46972175 -54408346 + L1ME1 LINE L1 5959 6161 -5 1143 148 0 12 chr15 46972419 46972588 -54407933 - AluSg/x SINE Alu -18 292 126 560 199 15 0 chr15 46972996 46973127 -54407394 - L1MC4a LINE L1 -1813 5995 5863 * 4877 139 50 48 chr15 46973124 46974454 -54406067 + L1MA3 LINE L1 4976 6305 0 2152 110 10 7 chr15 46974528 46974829 -54405692 - AluSp SINE Alu -10 303 2 592 231 47 6 chr15 46974830 46974999 -54405522 - L1ME1 LINE L1 -261 5905 5730 186 43 0 0 chr15 46975003 46975026 -54405495 + (TC)n Simple_repeat Simple_repeat 1 23 0 283 241 72 0 chr15 46975026 46975109 -54405412 - L1MC4a LINE L1 -1948 5860 5772 435 119 0 0 chr15 46975125 46975192 -54405329 + (CA)n Simple_repeat Simple_repeat 2 68 0 2288 41 0 58 chr15 46975194 46975485 -54405036 - AluSp SINE Alu -23 290 17 949 123 0 12 chr15 46975990 46976153 -54404368 + MER3 DNA MER1_type 8 168 -41 1889 135 20 33 chr15 46976532 46976836 -54403685 - AluSx SINE Alu -12 300 1 2108 137 0 0 chr15 46977085 46977377 -54403144 - AluSx SINE Alu -20 292 1 232 87 0 43 chr15 46977844 46977890 -54402631 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 2217 92 3 23 chr15 46977896 46978200 -54402321 - AluSg SINE Alu -12 298 1 182 278 111 0 chr15 46978237 46978291 -54402230 - MIR3 SINE MIR -54 154 95 2356 95 7 0 chr15 46978485 46978780 -54401741 - AluSx SINE Alu -14 298 2 816 267 51 5 chr15 46979107 46979302 -54401219 - MIR SINE MIR -49 213 10 2163 131 3 6 chr15 46979566 46979879 -54400642 + AluSx SINE Alu 1 312 0 317 0 70 0 chr15 46980600 46980643 -54399878 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2232 82 3 40 chr15 46980696 46981000 -54399521 - AluSx SINE Alu -19 293 1 2417 83 0 10 chr15 46983602 46983914 -54396607 - AluY SINE Alu -2 309 1 2076 111 3 49 chr15 46983919 46984086 -54396435 - AluSx SINE Alu -19 293 145 2373 84 3 0 chr15 46984086 46984382 -54396139 - AluSx SINE Alu -15 297 1 2076 111 3 49 chr15 46984382 46984521 -54396000 - AluSx SINE Alu -167 145 1 1316 191 0 4 chr15 46984689 46984914 -54395607 + AluJb SINE Alu 85 308 -4 654 182 78 52 chr15 46985122 46985276 -54395245 + FRAM SINE Alu 1 158 -8 281 260 154 16 chr15 46985784 46985907 -54394614 - MIR3 SINE MIR -58 150 11 21 71 0 0 chr15 46986383 46986425 -54394096 + AT_rich Low_complexity Low_complexity 1 42 0 2306 100 0 3 chr15 46986532 46986833 -54393688 + AluSg SINE Alu 1 300 -10 2275 113 0 19 chr15 46986913 46987231 -54393290 + AluSx SINE Alu 1 312 0 719 186 0 8 chr15 46987239 46987363 -54393158 + FLAM_C SINE Alu 1 123 -20 1021 169 46 18 chr15 46987380 46987599 -54392922 + L1PB4 LINE L1 5932 6156 0 534 246 56 15 chr15 46987623 46987818 -54392703 + L1ME1 LINE L1 5959 6161 -5 1143 148 0 12 chr15 46988062 46988231 -54392290 - AluSg/x SINE Alu -18 294 128 560 199 15 0 chr15 46988639 46988770 -54391751 - L1MC4a LINE L1 -1813 5995 5863 * 4877 139 50 48 chr15 46988767 46990097 -54390424 + L1MA3 LINE L1 4976 6305 0 2152 110 10 7 chr15 46990171 46990472 -54390049 - AluSp SINE Alu -10 303 2 592 231 47 6 chr15 46990473 46990642 -54389879 - L1ME1 LINE L1 -261 5905 5730 186 43 0 0 chr15 46990646 46990669 -54389852 + (TC)n Simple_repeat Simple_repeat 1 23 0 283 241 72 0 chr15 46990669 46990752 -54389769 - L1MC4a LINE L1 -1948 5860 5772 435 119 0 0 chr15 46990768 46990835 -54389686 + (CA)n Simple_repeat Simple_repeat 2 68 0 2288 41 0 58 chr15 46990837 46991128 -54389393 - AluSp SINE Alu -23 290 17 949 123 0 12 chr15 46991633 46991796 -54388725 + MER3 DNA MER1_type 8 168 -41 1889 135 20 33 chr15 46992175 46992479 -54388042 - AluSx SINE Alu -12 300 1 1377 132 0 0 chr15 46992728 46992917 -54387604 - AluSg/x SINE Alu -20 292 104 2068 87 11 4 chr15 46993028 46993303 -54387218 + AluSx SINE Alu 22 298 -14 316 330 28 17 chr15 46993327 46993355 -54387166 - L1MEc LINE L1 -4343 2053 2027 1603 172 72 24 chr15 46993355 46993687 -54386834 - MER7A DNA MER2_type 0 346 1 316 330 28 17 chr15 46993687 46993834 -54386687 - L1MEc LINE L1 -4369 2027 1876 876 136 0 0 chr15 46993859 46993977 -54386544 + FLAM_C SINE Alu 6 123 -20 1806 141 4 0 chr15 46994224 46994493 -54386028 - AluSx SINE Alu -42 270 1 252 174 22 0 chr15 46994530 46994576 -54385945 - MER5A DNA MER1_type -121 68 22 333 172 0 0 chr15 46994790 46994848 -54385673 - AluS SINE Alu -249 59 2 370 211 59 0 chr15 46994865 46994964 -54385557 - L1M4 LINE L1 -3288 2858 2755 277 263 8 8 chr15 46994964 46995082 -54385439 + AluSc SINE Alu 1 118 -181 2133 106 6 44 chr15 46995459 46995819 -54384702 + L1MA7 LINE L1 5945 6290 -1 673 117 0 0 chr15 46995965 46996059 -54384462 + AluSg/x SINE Alu 196 289 -21 811 188 77 22 chr15 46996099 46996379 -54384142 - L1M LINE L1 -737 5429 5140 2306 114 3 0 chr15 46996400 46996706 -54383815 - AluSg SINE Alu -3 307 1 1554 147 41 75 chr15 46996717 46996878 -54383643 - AluJo SINE Alu -14 298 133 2195 101 7 0 chr15 46996878 46997176 -54383345 - AluSg SINE Alu -10 300 1 2292 96 0 3 chr15 46997183 46997484 -54383037 - AluSg SINE Alu -10 300 1 1554 147 41 75 chr15 46997484 46997607 -54382914 - AluJo SINE Alu -185 127 16 1283 221 68 46 chr15 46998174 46998717 -54381804 - L1M4 LINE L1 -3418 2728 2174 1420 152 70 0 chr15 46998728 46998985 -54381536 + AluSx SINE Alu 19 293 -19 260 267 40 0 chr15 46999144 46999294 -54381227 + (TA)n Simple_repeat Simple_repeat 2 157 0 209 238 0 0 chr15 46999315 46999357 -54381164 + T-rich Low_complexity Low_complexity 1 42 0 646 255 43 0 chr15 46999491 46999675 -54380846 + L2 LINE L2 3122 3313 0 2399 84 0 3 chr15 46999784 47000083 -54380438 + AluSp SINE Alu 1 298 -15 186 133 0 0 chr15 47000117 47000147 -54380374 + (T)n Simple_repeat Simple_repeat 1 30 0 201 121 0 0 chr15 47001423 47001456 -54379065 + (T)n Simple_repeat Simple_repeat 1 33 0 1874 114 0 4 chr15 47001944 47002199 -54378322 - AluSg SINE Alu -7 303 50 782 274 18 53 chr15 47002204 47002430 -54378091 - MIR SINE MIR -8 254 37 342 0 0 0 chr15 47002444 47002482 -54378039 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1961 153 0 29 chr15 47002491 47002629 -54377892 + AluJb SINE Alu 5 146 -166 2287 89 7 3 chr15 47002629 47002921 -54377600 + AluSg SINE Alu 1 293 -17 1961 153 0 29 chr15 47002921 47003089 -54377432 + AluJb SINE Alu 146 302 -10 947 164 0 31 chr15 47003096 47003255 -54377266 - AluJo SINE Alu -39 273 120 2002 171 0 0 chr15 47003257 47003567 -54376954 - AluSx SINE Alu 0 312 3 838 196 0 20 chr15 47003570 47003718 -54376803 - AluJo SINE Alu -167 145 1 2229 97 7 3 chr15 47004036 47004325 -54376196 + AluSx SINE Alu 1 290 -22 189 264 9 142 chr15 47004500 47004606 -54375915 + L2 LINE L2 3088 3179 -93 524 210 192 58 chr15 47005393 47005438 -54375083 - L1MC5 LINE L1 -390 7571 7533 1822 137 48 20 chr15 47005438 47005731 -54374790 - AluSx SINE Alu -11 301 1 524 210 192 58 chr15 47005731 47006028 -54374493 - L1MC5 LINE L1 -428 7533 7183 708 210 54 38 chr15 47006029 47006215 -54374306 + Charlie1a DNA MER1_type 1 189 -1266 363 204 82 31 chr15 47006210 47006308 -54374213 + Charlie1a DNA MER1_type 632 734 -721 * 2312 88 3 0 chr15 47006314 47006619 -54373902 - AluSq SINE Alu -7 306 1 253 27 0 27 chr15 47007559 47007596 -54372925 + AluYa5 SINE Alu 163 198 -103 259 227 0 0 chr15 47007604 47007679 -54372842 + L1M4 LINE L1 5279 5353 -821 271 137 0 20 chr15 47007700 47007751 -54372770 + L1M4 LINE L1 5783 5832 -346 795 132 0 76 chr15 47008349 47008493 -54372028 + FLAM_C SINE Alu 1 133 0 226 315 157 0 chr15 47008561 47008669 -54371852 + L2 LINE L2 3189 3313 0 1681 153 45 11 chr15 47008699 47008986 -54371535 - AluJb SINE Alu -15 297 1 2194 124 10 0 chr15 47009129 47009435 -54371086 + AluJb SINE Alu 1 309 -3 212 130 43 0 chr15 47009668 47009714 -54370807 + T-rich Low_complexity Low_complexity 2 49 0 657 208 23 8 chr15 47009716 47009846 -54370675 - FLAM_C SINE Alu -1 132 1 25 0 0 0 chr15 47010171 47010196 -54370325 + AT_rich Low_complexity Low_complexity 1 25 0 577 244 8 0 chr15 47010297 47010416 -54370105 + FLAM_A SINE Alu 1 120 -13 3194 200 66 101 chr15 47010648 47011160 -54369361 + L1MC4 LINE L1 6459 6988 -1054 1666 157 30 13 chr15 47011160 47011459 -54369062 + AluJb SINE Alu 1 304 -8 3194 200 66 101 chr15 47011459 47011477 -54369044 + L1MC4 LINE L1 6988 7005 -1037 2082 60 152 0 chr15 47011477 47011779 -54368742 + L1PA7 LINE L1 5806 6153 -1 3194 200 66 101 chr15 47011779 47011863 -54368658 + L1MC4 LINE L1 7005 7090 -952 1841 141 20 10 chr15 47011863 47012160 -54368361 + AluJb SINE Alu 1 300 -12 3194 200 66 101 chr15 47012160 47012786 -54367735 + L1MC4 LINE L1 7090 7657 -385 1896 146 7 14 chr15 47012804 47013119 -54367402 - AluSx SINE Alu 0 312 1 1031 174 22 27 chr15 47013126 47013310 -54367211 - AluJ SINE Alu -22 290 108 191 62 62 0 chr15 47013320 47013352 -54367169 + G-rich Low_complexity Low_complexity 3 36 0 744 140 0 0 chr15 47013356 47013463 -54367058 - AluJ SINE Alu -205 107 1 335 271 75 21 chr15 47013534 47013774 -54366747 + L1M4 LINE L1 3712 3964 -2182 348 285 82 59 chr15 47013782 47014038 -54366483 + L1M4 LINE L1 4024 4285 -1861 889 121 7 43 chr15 47014038 47014179 -54366342 + AluJo SINE Alu 1 136 -176 2352 68 13 10 chr15 47014650 47014960 -54365561 - AluY SINE Alu 0 311 1 878 210 42 92 chr15 47014971 47015328 -54365193 - L1MC4 LINE L1 -17 8025 7687 478 299 136 6 chr15 47016528 47016705 -54363816 - MIR SINE MIR -43 219 20 267 298 12 0 chr15 47016716 47016800 -54363721 + (TA)n Simple_repeat Simple_repeat 1 85 0 235 140 0 35 chr15 47016833 47016890 -54363631 + (TA)n Simple_repeat Simple_repeat 1 55 0 393 246 62 39 chr15 47017060 47017190 -54363331 + MIR SINE MIR 128 260 -2 29 0 0 0 chr15 47017192 47017221 -54363300 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr15 47017325 47017354 -54363167 + AT_rich Low_complexity Low_complexity 1 29 0 823 144 0 0 chr15 47017358 47017476 -54363045 - FLAM_C SINE Alu -25 118 1 1968 97 0 117 chr15 47018033 47018385 -54362136 - AluSx SINE Alu 0 312 2 795 190 13 32 chr15 47018389 47018547 -54361974 - AluJb SINE Alu -18 294 140 227 211 154 0 chr15 47018904 47018956 -54361565 - L2 LINE L2 -1 3312 3253 229 309 31 10 chr15 47018997 47019094 -54361427 - MER5A DNA MER1_type -2 187 89 2313 115 0 0 chr15 47019643 47019955 -54360566 + AluSx SINE Alu 1 312 0 517 180 125 47 chr15 47020369 47020497 -54360024 - FLAM_C SINE Alu -5 138 1 1295 169 0 5 chr15 47020901 47021108 -54359413 - AluJb SINE Alu -14 298 93 2079 131 0 0 chr15 47021506 47021811 -54358710 + AluSx SINE Alu 1 305 0 2193 90 7 0 chr15 47022716 47023005 -54357516 + AluSc SINE Alu 1 291 -18 365 175 0 16 chr15 47023064 47023127 -54357394 + AluS SINE Alu 1 62 -237 1513 112 5 0 chr15 47023127 47023332 -54357189 + AluSg/x SINE Alu 107 312 0 439 153 12 0 chr15 47023753 47023838 -54356683 - L1MB8 LINE L1 0 6178 6093 707 150 65 40 chr15 47023847 47024047 -54356474 - L1MB4 LINE L1 -1 6179 5975 270 164 16 16 chr15 47024051 47024112 -54356409 - L1MB4 LINE L1 -977 5356 5296 2260 102 13 0 chr15 47024130 47024433 -54356088 - AluSg SINE Alu -3 307 1 697 112 0 0 chr15 47025173 47025271 -54355250 + AluSg/x SINE Alu 193 290 -22 2348 96 7 0 chr15 47025938 47026241 -54354280 - AluSx SINE Alu -7 305 1 3292 40 26 17 chr15 47026793 47027215 -54353306 + L1PA5 LINE L1 5729 6154 0 21 0 0 0 chr15 47027306 47027327 -54353194 + AT_rich Low_complexity Low_complexity 1 21 0 281 392 48 16 chr15 47027798 47027923 -54352598 - L2 LINE L2 -21 3251 3123 3849 55 0 0 chr15 47028045 47028534 -54351987 - L1PA6 LINE L1 -59 6095 5607 616 63 0 0 chr15 47028688 47028767 -54351754 - MADE1 DNA Mariner -1 79 1 2213 89 0 0 chr15 47028863 47029168 -54351353 - AluSg SINE Alu 0 307 3 21 0 0 0 chr15 47029218 47029239 -54351282 + AT_rich Low_complexity Low_complexity 1 21 0 836 214 42 78 chr15 47029958 47030079 -54350442 - Charlie2 DNA MER1_type -596 2266 2142 2295 104 0 0 chr15 47030079 47030377 -54350144 - AluSx SINE Alu -14 298 1 836 214 42 78 chr15 47030377 47030681 -54349840 - Charlie2 DNA MER1_type -720 2142 1856 796 240 103 33 chr15 47030673 47030973 -54349548 - Charlie2 DNA MER1_type -2453 329 9 * 243 244 47 63 chr15 47031586 47031713 -54348808 - MLT1L LTR MaLR -8 607 483 362 258 13 66 chr15 47031831 47031982 -54348539 - MLT1L LTR MaLR -337 278 136 1935 150 0 26 chr15 47032596 47032903 -54347618 - AluSx SINE Alu -13 299 1 2070 105 4 0 chr15 47033500 47033777 -54346744 + AluSg SINE Alu 17 294 -16 228 282 113 20 chr15 47034567 47034649 -54345872 - L1ME4a LINE L1 -115 6006 5933 1874 151 16 16 chr15 47034649 47034953 -54345568 - AluSx SINE Alu -8 304 1 228 282 113 20 chr15 47034953 47035118 -54345403 - L1ME4a LINE L1 -188 5933 5736 352 259 65 43 chr15 47035247 47035321 -54345200 - L1ME4a LINE L1 -601 5520 5440 1568 175 34 10 chr15 47035321 47035612 -54344909 - AluJo SINE Alu -14 298 1 352 259 65 43 chr15 47035612 47035676 -54344845 - L1ME4a LINE L1 -681 5440 5379 31 0 0 0 chr15 47035693 47035724 -54344797 + AT_rich Low_complexity Low_complexity 1 31 0 2205 120 3 0 chr15 47037222 47037523 -54342998 - AluSg SINE Alu -8 302 1 23 33 0 0 chr15 47038418 47038448 -54342073 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr15 47038721 47038744 -54341777 + AT_rich Low_complexity Low_complexity 1 23 0 1589 205 0 3 chr15 47038751 47039044 -54341477 + AluJo SINE Alu 19 310 -2 427 266 8 8 chr15 47039255 47039379 -54341142 + MER94 DNA DNA 4 127 -7 853 161 6 29 chr15 47039690 47039864 -54340657 - AluSg/x SINE Alu -13 299 130 300 143 0 54 chr15 47040160 47040216 -54340305 - AluSg/x SINE Alu -130 170 118 2195 119 23 0 chr15 47040718 47041021 -54339500 + AluSg SINE Alu 1 310 0 1920 119 16 16 chr15 47041518 47041828 -54338693 - AluSx SINE Alu 0 312 3 2289 107 3 0 chr15 47043824 47044132 -54336389 - AluSc SINE Alu 0 309 1 21 0 0 0 chr15 47044136 47044157 -54336364 + AT_rich Low_complexity Low_complexity 1 21 0 647 235 268 9 chr15 47045174 47045502 -54335019 + L1M4 LINE L1 3751 4163 -1983 2690 38 0 6 chr15 47045510 47045826 -54334695 + AluYb8 SINE Alu 5 318 0 1144 132 0 39 chr15 47045826 47046008 -54334513 + AluSg/x SINE Alu 134 308 -4 895 139 77 52 chr15 47046104 47046298 -54334223 + MER46A DNA MER2_type 28 226 -10 365 257 27 60 chr15 47046313 47046496 -54334025 - HAL1 LINE L1 -178 2329 2153 279 356 41 0 chr15 47046530 47046676 -54333845 - HAL1 LINE L1 -556 1951 1800 384 240 0 10 chr15 47046826 47046926 -54333595 + L1MC/D LINE L1 5689 5787 -2021 2220 111 10 0 chr15 47046995 47047293 -54333228 + AluSp SINE Alu 1 301 -12 21 0 0 0 chr15 47047681 47047702 -54332819 + AT_rich Low_complexity Low_complexity 1 21 0 462 238 143 75 chr15 47048307 47048610 -54331911 + L1MEd LINE L1 613 959 -5160 2000 126 14 0 chr15 47048610 47048895 -54331626 + AluSx SINE Alu 1 289 -23 462 238 143 75 chr15 47048895 47049045 -54331476 + L1MEd LINE L1 959 1097 -5022 312 228 43 54 chr15 47049070 47049162 -54331359 + L1MEd LINE L1 1161 1251 -4868 2301 103 0 3 chr15 47049352 47049653 -54330868 - AluSx SINE Alu -12 300 1 4763 211 32 44 chr15 47049654 47050582 -54329939 - L1M4 LINE L1 -867 5559 4653 2240 118 0 0 chr15 47050582 47050871 -54329650 - AluSx SINE Alu -23 289 1 4763 211 32 44 chr15 47050871 47051434 -54329087 - L1M4 LINE L1 -1773 4653 4085 1048 133 0 13 chr15 47051448 47051598 -54328923 - AluJo SINE Alu -164 148 1 9167 154 92 77 chr15 47051599 47052064 -54328457 - L1MCa LINE L1 -3220 3206 2749 270 0 0 0 chr15 47052064 47052094 -54328427 + (TG)n Simple_repeat Simple_repeat 1 30 0 1941 137 7 0 chr15 47052094 47052371 -54328150 - AluSx SINE Alu -33 279 1 9167 154 92 77 chr15 47052371 47053215 -54327306 - L1MCa LINE L1 -3677 2749 1919 2102 111 3 10 chr15 47053215 47053512 -54327009 - AluSx SINE Alu -17 295 1 9167 154 92 77 chr15 47053512 47054091 -54326430 - L1MCa LINE L1 -4507 1919 1350 751 139 9 0 chr15 47054091 47054206 -54326315 - FLAM_C SINE Alu -17 116 1 9167 154 92 77 chr15 47054206 47055456 -54325065 - L1MCa LINE L1 -5076 1350 19 376 169 14 0 chr15 47055454 47055525 -54324996 - L1MC4 LINE L1 -1027 7015 6944 * 1675 223 95 6 chr15 47055537 47056043 -54324478 - L1ME1 LINE L1 -5 6161 5611 235 203 95 0 chr15 47056073 47056147 -54324374 - L1MC4 LINE L1 -1138 6904 6824 193 191 48 0 chr15 47056162 47056204 -54324317 - MER5B DNA MER1_type -123 55 12 2298 101 3 7 chr15 47056621 47056928 -54323593 - AluSx SINE Alu -6 306 1 1666 146 94 4 chr15 47056937 47057204 -54323317 - AluJb SINE Alu -21 291 1 1359 149 112 45 chr15 47057732 47058001 -54322520 - AluJb SINE Alu -25 287 1 21 0 0 0 chr15 47058761 47058782 -54321739 + AT_rich Low_complexity Low_complexity 1 21 0 777 205 0 48 chr15 47058782 47058948 -54321573 + FRAM SINE Alu 1 158 -8 893 133 0 15 chr15 47059022 47059157 -54321364 + FLAM_C SINE Alu 1 133 0 2187 112 16 7 chr15 47059292 47059597 -54320924 + AluSx SINE Alu 1 308 -4 387 192 224 83 chr15 47059658 47059722 -54320799 + MER5A DNA MER1_type 9 63 -126 2374 86 0 16 chr15 47059722 47060026 -54320495 + AluSc SINE Alu 1 299 -10 387 192 224 83 chr15 47060026 47060117 -54320404 + MER5A DNA MER1_type 63 186 -3 257 216 162 27 chr15 47060139 47060250 -54320271 - L3 LINE CR1 -70 1507 1382 1117 204 21 16 chr15 47060258 47060509 -54320012 - MIR SINE MIR -7 255 4 334 211 56 44 chr15 47060512 47060602 -54319919 - L3 LINE CR1 -182 1395 1305 199 268 295 0 chr15 47060659 47060771 -54319750 - L3 LINE CR1 -273 1304 1160 1811 165 0 3 chr15 47060869 47061160 -54319361 + AluJb SINE Alu 1 290 -22 21 0 0 0 chr15 47061704 47061725 -54318796 + AT_rich Low_complexity Low_complexity 1 21 0 1955 116 4 0 chr15 47061734 47062010 -54318511 - AluSg SINE Alu -17 293 17 1963 147 0 26 chr15 47062607 47062914 -54317607 + AluSx SINE Alu 1 299 -13 233 319 14 49 chr15 47063535 47063679 -54316842 + MLT1L LTR MaLR 140 278 -337 226 252 47 63 chr15 47063797 47063924 -54316597 + MLT1L LTR MaLR 483 607 -8 796 240 103 33 chr15 47064537 47064837 -54315684 + Charlie2 DNA MER1_type 9 329 -2533 * 893 207 42 78 chr15 47064829 47065133 -54315388 + Charlie2 DNA MER1_type 1856 2142 -720 2295 104 0 0 chr15 47065133 47065431 -54315090 + AluSx SINE Alu 1 298 -14 893 207 42 78 chr15 47065431 47065552 -54314969 + Charlie2 DNA MER1_type 2142 2266 -596 21 0 0 0 chr15 47066271 47066292 -54314229 + AT_rich Low_complexity Low_complexity 1 21 0 2214 89 0 0 chr15 47066342 47066647 -54313874 + AluSg SINE Alu 3 307 0 616 63 0 0 chr15 47066743 47066822 -54313699 + MADE1 DNA Mariner 1 79 -1 4257 44 22 13 chr15 47066976 47067519 -54313002 + L1PA5 LINE L1 5607 6154 0 21 0 0 0 chr15 47067609 47067630 -54312891 + AT_rich Low_complexity Low_complexity 1 21 0 281 392 48 16 chr15 47068101 47068226 -54312295 - L2 LINE L2 -21 3251 3123 527 130 57 16 chr15 47068346 47068469 -54312052 - L1PA6 LINE L1 -59 6095 5968 632 268 103 65 chr15 47168490 47168823 -54211698 - L2 LINE L2 -197 3116 2779 2220 120 3 0 chr15 47168827 47169118 -54211403 - AluSg SINE Alu -18 292 1 1612 123 4 0 chr15 47169243 47169471 -54211050 - AluSq SINE Alu 0 313 85 207 301 12 0 chr15 47169652 47169735 -54210786 + (TATG)n Simple_repeat Simple_repeat 3 86 0 2187 130 10 0 chr15 47170004 47170305 -54210216 - AluSx SINE Alu -8 304 1 238 301 62 0 chr15 47170522 47170635 -54209886 - L1M4 LINE L1 -1114 5032 4913 1214 129 0 0 chr15 47171332 47171503 -54209018 - AluSc SINE Alu -13 296 126 1070 161 0 0 chr15 47171604 47171765 -54208756 - AluSq SINE Alu -152 161 1 709 220 112 58 chr15 47171766 47172085 -54208436 - LTR54 LTR ERV1 -28 482 78 2418 90 3 0 chr15 47173162 47173463 -54207058 + AluSp SINE Alu 1 302 -11 555 163 0 0 chr15 47173563 47173649 -54206872 - AluS SINE Alu -224 88 3 21 0 0 0 chr15 47174154 47174175 -54206346 + AT_rich Low_complexity Low_complexity 1 21 0 742 269 0 0 chr15 47174175 47174331 -54206190 - AluSg/x SINE Alu -23 287 132 2193 121 16 0 chr15 47174350 47174655 -54205866 - AluSx SINE Alu -2 310 1 810 253 29 17 chr15 47174671 47174912 -54205609 - L1ME3A LINE L1 -2 6168 5925 624 196 101 22 chr15 47174913 47175051 -54205470 - MER63 DNA MER1_type -287 775 1 277 179 0 18 chr15 47175053 47175109 -54205412 - L2 LINE L2 -68 3245 3191 2197 101 0 3 chr15 47175268 47175555 -54204966 - AluSq SINE Alu -26 287 2 1025 107 13 0 chr15 47175656 47175888 -54204633 + L1MA8 LINE L1 5620 5950 -341 2318 78 3 0 chr15 47176113 47176425 -54204096 - AluSx SINE Alu 0 313 1 947 96 0 0 chr15 47176449 47176574 -54203947 - FLAM_C SINE Alu -8 125 1 2016 124 13 0 chr15 47177218 47177525 -54202996 - MER2 DNA MER2_type -34 311 1 4058 185 83 15 chr15 47177525 47177838 -54202683 + MER21B LTR ERV1 16 306 -557 2296 95 3 0 chr15 47177838 47178132 -54202389 + AluSg SINE Alu 1 295 -15 4058 185 83 15 chr15 47178132 47178609 -54201912 + MER21B LTR ERV1 306 860 -3 909 137 8 0 chr15 47178617 47178748 -54201773 - FLAM_C SINE Alu -11 132 1 2287 109 3 0 chr15 47178748 47179050 -54201471 - AluSq SINE Alu -2 311 9 1606 145 0 4 chr15 47179531 47179773 -54200748 - AluSx SINE Alu -71 241 1 1973 108 73 0 chr15 47181021 47181309 -54199212 - AluSx SINE Alu -3 309 1 278 323 58 26 chr15 47181312 47181406 -54199115 - MIR SINE MIR -17 245 143 5002 76 19 29 chr15 47181406 47181851 -54198670 + LTR8 LTR ERV1 1 438 -253 2101 116 3 7 chr15 47181851 47182152 -54198369 + AluSg SINE Alu 1 300 -10 5002 76 19 29 chr15 47182152 47182402 -54198119 + LTR8 LTR ERV1 438 689 -2 278 323 58 26 chr15 47182402 47182462 -54198059 - MIR SINE MIR -119 143 86 371 222 192 78 chr15 47182523 47182559 -54197962 - MER5A DNA MER1_type 0 189 158 2452 65 0 0 chr15 47182559 47182853 -54197668 + AluY SINE Alu 1 294 -17 2075 142 0 3 chr15 47182861 47183157 -54197364 + AluJb SINE Alu 1 295 -17 371 222 192 78 chr15 47183157 47183278 -54197243 - MER5A DNA MER1_type -37 152 4 1112 131 0 0 chr15 47183412 47183565 -54196956 - AluSx SINE Alu -155 157 5 2309 115 0 3 chr15 47183704 47184008 -54196513 - AluSx SINE Alu -9 303 1 645 146 64 0 chr15 47185423 47185533 -54194988 + MER94 DNA DNA 1 117 -17 2172 91 40 13 chr15 47185614 47185912 -54194609 - AluSq SINE Alu -7 306 1 288 0 0 0 chr15 47185982 47186014 -54194507 + (TA)n Simple_repeat Simple_repeat 1 32 0 1466 194 0 32 chr15 47186015 47186299 -54194222 - AluJo SINE Alu -27 285 11 1060 200 31 0 chr15 47187312 47187507 -54193014 + MER3 DNA MER1_type 8 208 -1 525 73 0 0 chr15 47187545 47187613 -54192908 + AluS SINE Alu 2 69 -244 2008 129 3 10 chr15 47187952 47188265 -54192256 + AluSx SINE Alu 1 312 0 321 330 39 10 chr15 47188298 47188414 -54192107 + MIR SINE MIR 9 127 -81 2400 102 0 6 chr15 47188450 47188763 -54191758 + AluSx SINE Alu 1 311 -1 2323 101 0 10 chr15 47188766 47189063 -54191458 + AluSq SINE Alu 1 294 -19 1244 146 0 0 chr15 47189063 47189241 -54191280 + AluSg/x SINE Alu 134 311 -1 2281 107 0 3 chr15 47189750 47190050 -54190471 + AluSg SINE Alu 2 300 -10 1308 299 37 32 chr15 47190079 47190514 -54190007 + MER115 DNA AcHobo 1 437 -256 3406 219 76 12 chr15 47190546 47191345 -54189176 - MER21B LTR ERV1 -11 852 3 887 279 29 16 chr15 47191373 47191536 -54188985 + MER115 DNA AcHobo 445 613 -80 2562 56 0 0 chr15 47191536 47191839 -54188682 - AluY SINE Alu -8 303 1 887 279 29 16 chr15 47191839 47191919 -54188602 + MER115 DNA AcHobo 613 691 -2 265 175 0 79 chr15 47192147 47192210 -54188311 + L2 LINE L2 3211 3268 -45 818 168 0 0 chr15 47192230 47192361 -54188160 - FLAM_C SINE Alu 0 133 3 2302 119 0 3 chr15 47192373 47192675 -54187846 - AluSx SINE Alu -11 301 1 2326 112 0 0 chr15 47192760 47193072 -54187449 - AluSx SINE Alu 0 312 1 686 148 0 9 chr15 47193117 47193261 -54187260 - FLAM_A SINE Alu 0 150 8 376 182 26 0 chr15 47193872 47193949 -54186572 + Tigger5 DNA MER2_type 2245 2323 0 641 217 11 33 chr15 47194362 47194542 -54185979 - MER104 DNA Tc2 -4 176 1 2097 130 0 34 chr15 47194585 47194619 -54185902 - AluSx SINE Alu 0 312 278 219 69 0 0 chr15 47194619 47194648 -54185873 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2097 130 0 34 chr15 47194648 47194936 -54185585 - AluSx SINE Alu -34 278 1 545 349 24 8 chr15 47194995 47195247 -54185274 - MIR SINE MIR 0 262 7 575 179 98 0 chr15 47195907 47196019 -54184502 - Charlie1b DNA MER1_type 0 523 401 2504 82 14 11 chr15 47196022 47196376 -54184145 + L1PA14 LINE L1 5804 6158 -3 1715 101 18 50 chr15 47196428 47196572 -54183949 - MER50 LTR ERV1 -23 711 579 2063 119 44 0 chr15 47196572 47196865 -54183656 + AluSq SINE Alu 1 306 -7 1715 101 18 50 chr15 47196865 47196998 -54183523 - MER50 LTR ERV1 -155 579 443 4763 113 188 89 chr15 47197002 47198293 -54182228 + pTR5 LTR ERV1 742 2295 -143 2160 141 70 27 chr15 47198307 47198719 -54181802 - MER50 LTR ERV1 -295 439 10 1614 173 16 90 chr15 47199053 47199497 -54181024 - Charlie1b DNA MER1_type -112 411 1 3191 133 9 11 chr15 47199615 47199828 -54180693 - L1MB3 LINE L1 -7 6176 5964 1750 141 10 35 chr15 47199828 47200140 -54180381 - AluJo SINE Alu -8 304 1 3191 133 9 11 chr15 47200140 47200452 -54180069 - L1MB3 LINE L1 -219 5964 5652 567 152 0 0 chr15 47200492 47200584 -54179937 - L1MB3 LINE L1 -522 5661 5570 180 0 0 0 chr15 47200654 47200674 -54179847 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 2250 109 6 3 chr15 47200939 47201250 -54179271 + AluSx SINE Alu 1 312 0 351 0 0 0 chr15 47202233 47202272 -54178249 + (CA)n Simple_repeat Simple_repeat 1 39 0 2251 102 7 0 chr15 47202438 47202733 -54177788 - AluSx SINE Alu -15 297 1 234 257 0 14 chr15 47203087 47203157 -54177364 + CT-rich Low_complexity Low_complexity 2 70 0 2108 236 131 27 chr15 47203217 47203913 -54176608 + LTR50 LTR ERVL 4 771 -24 2489 74 3 6 chr15 47203953 47204265 -54176256 - AluSp SINE Alu -2 311 1 360 233 168 50 chr15 47205391 47205593 -54174928 - L1ME LINE L1 -372 5749 5524 2148 112 0 14 chr15 47205710 47206030 -54174491 + AluSx SINE Alu 1 316 0 204 40 0 0 chr15 47206625 47206650 -54173871 + (CAAAAA)n Simple_repeat Simple_repeat 5 29 0 367 273 153 88 chr15 47207236 47207668 -54172853 + L1MDa LINE L1 1601 2060 -4480 22 0 0 0 chr15 47209021 47209043 -54171478 + AT_rich Low_complexity Low_complexity 1 22 0 262 220 85 0 chr15 47209122 47209181 -54171340 - MER91 DNA MER1_type 0 140 77 1077 166 50 55 chr15 47209355 47209674 -54170847 - MER33 DNA MER1_type -16 308 1 383 275 55 0 chr15 47209810 47209952 -54170569 + L1ME LINE L1 5434 5581 -540 249 209 0 0 chr15 47210085 47210152 -54170369 + (TA)n Simple_repeat Simple_repeat 1 67 0 298 274 57 8 chr15 47211150 47211274 -54169247 + LTR67 LTR ERVL 425 554 -3 237 247 130 0 chr15 47211650 47211727 -54168794 - L3 LINE CR1 -162 1415 1329 1202 316 116 30 chr15 47211741 47211898 -54168623 - L3 LINE CR1 -785 792 650 2381 93 0 3 chr15 47211898 47212199 -54168322 + AluSg SINE Alu 1 300 -10 1202 316 116 30 chr15 47212199 47212664 -54167857 - L3 LINE CR1 -927 650 117 1951 154 3 3 chr15 47212791 47213077 -54167444 - AluJb SINE Alu -24 288 3 332 247 105 40 chr15 47213157 47213404 -54167117 - L1ME4a LINE L1 -4 6117 5855 2333 91 7 0 chr15 47213434 47213731 -54166790 - AluSq SINE Alu -14 299 1 313 306 110 58 chr15 47213999 47214172 -54166349 - MIR SINE MIR -71 191 10 1942 95 7 3 chr15 47214454 47214737 -54165784 + L1PB2 LINE L1 5865 6148 -3 2244 94 0 29 chr15 47214905 47215214 -54165307 - AluSx SINE Alu -12 300 1 356 148 0 0 chr15 47215218 47215272 -54165249 + MER5B DNA MER1_type 1 54 -124 2325 88 0 3 chr15 47215282 47215578 -54164943 + AluSc SINE Alu 7 301 -8 1559 185 35 78 chr15 47215887 47216060 -54164461 - MLT1C LTR MaLR -1 466 287 2179 115 7 0 chr15 47216060 47216365 -54164156 - AluSx SINE Alu -4 308 2 1559 185 35 78 chr15 47216365 47216583 -54163938 - MLT1C LTR MaLR -180 287 98 1701 94 75 130 chr15 47216583 47216914 -54163607 - AluSp SINE Alu 0 313 1 1559 185 35 78 chr15 47216914 47217008 -54163513 - MLT1C LTR MaLR -369 98 1 2445 25 0 7 chr15 47217762 47218042 -54162479 - AluY SINE Alu -12 299 22 489 254 105 49 chr15 47218074 47218185 -54162336 - L1MC5 LINE L1 -49 7912 7809 2234 121 0 0 chr15 47218185 47218482 -54162039 - AluSx SINE Alu -15 297 1 489 254 105 49 chr15 47218482 47218760 -54161761 - L1MC5 LINE L1 -152 7809 7501 226 167 48 0 chr15 47218851 47218893 -54161628 - MER20 DNA MER1_type -175 44 1 263 181 83 0 chr15 47218927 47218999 -54161522 - L1MC4 LINE L1 -1350 6692 6615 240 234 130 0 chr15 47218930 47219007 -54161514 + L1MC4 LINE L1 6614 6700 -1342 * 306 245 0 82 chr15 47219046 47219144 -54161377 - L1MC4 LINE L1 -1339 6703 6614 230 264 23 0 chr15 47219160 47219247 -54161274 + L1MC4 LINE L1 6614 6702 -1340 * 242 267 12 0 chr15 47219208 47219294 -54161227 - L1MC4 LINE L1 -1341 6701 6615 240 167 0 0 chr15 47219297 47219345 -54161176 + (TA)n Simple_repeat Simple_repeat 2 49 0 229 261 0 22 chr15 47219345 47219437 -54161084 + L1MC4 LINE L1 6614 6703 -1339 1990 127 40 0 chr15 47219447 47219747 -54160774 + AluSx SINE Alu 1 312 0 245 314 33 33 chr15 47219922 47220075 -54160446 - L1MC4a LINE L1 -412 7396 7244 569 223 54 22 chr15 47220099 47220323 -54160198 - L1MC5 LINE L1 -738 7223 6993 364 259 6 82 chr15 47220363 47220459 -54160062 - L1MC4 LINE L1 -945 7097 7016 1836 162 10 7 chr15 47220459 47220762 -54159759 - AluJb SINE Alu -8 304 1 364 259 6 82 chr15 47220762 47220823 -54159698 - L1MC4 LINE L1 -1026 7016 6952 423 0 0 0 chr15 47220936 47220983 -54159538 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 2289 114 0 0 chr15 47221034 47221331 -54159190 + AluSq SINE Alu 1 297 -16 5154 185 47 24 chr15 47221352 47221716 -54158805 - L1MC1 LINE L1 -89 6244 5890 9191 97 11 9 chr15 47221716 47223000 -54157521 - HSMAR1 DNA Mariner 0 1287 1 5154 185 47 24 chr15 47223000 47223692 -54156829 - L1MC1 LINE L1 -443 5890 5216 230 0 0 32 chr15 47223702 47223733 -54156788 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2116 125 0 3 chr15 47223733 47224018 -54156503 - AluSx SINE Alu -26 286 1 5154 185 47 24 chr15 47224018 47224422 -54156099 - L1MC1 LINE L1 -1117 5216 4823 2418 77 7 0 chr15 47224422 47224720 -54155801 - AluSx SINE Alu -12 300 1 5154 185 47 24 chr15 47224720 47225048 -54155473 - L1MC1 LINE L1 -1510 4823 4415 1732 175 8 38 chr15 47225053 47225418 -54155103 - MLT1A1 LTR MaLR -11 354 1 2072 216 30 17 chr15 47225418 47225886 -54154635 - MLT1A1-int LTR MaLR 0 1735 1262 234 132 0 0 chr15 47226176 47226214 -54154307 - MLT1A1-int LTR MaLR -515 856 819 2333 73 3 16 chr15 47226218 47226533 -54153988 - AluY SINE Alu 0 311 1 1231 212 7 33 chr15 47226542 47226848 -54153673 - MLT1A1-int LTR MaLR -639 732 435 2012 115 10 23 chr15 47226848 47227152 -54153369 + AluSq SINE Alu 1 300 -13 250 62 62 21 chr15 47227177 47227225 -54153296 + CT-rich Low_complexity Low_complexity 5 54 0 2172 129 0 0 chr15 47227236 47227538 -54152983 - AluSx SINE Alu 0 312 11 527 221 0 0 chr15 47227551 47227655 -54152866 - MLT1A1-int LTR MaLR -1312 423 320 4104 177 15 47 chr15 47227656 47228125 -54152396 + L1PB2 LINE L1 3436 3919 -2227 2182 107 31 0 chr15 47228125 47228415 -54152106 + AluSx SINE Alu 1 299 -13 4104 177 15 47 chr15 47228415 47228960 -54151561 + L1PB2 LINE L1 3919 4417 -1729 1413 116 0 20 chr15 47228960 47229198 -54151323 + AluSg/x SINE Alu 88 321 0 5775 142 10 36 chr15 47229205 47229301 -54151220 + L1PB2 LINE L1 4396 4493 -1658 2063 98 8 0 chr15 47229301 47229567 -54150954 + AluSq SINE Alu 1 268 -45 5775 142 10 36 chr15 47229567 47230174 -54150347 + L1PB2 LINE L1 4493 5114 -1037 2383 64 0 0 chr15 47230174 47230477 -54150044 + AluY SINE Alu 1 303 0 5775 142 10 36 chr15 47230477 47231581 -54148940 + L1PB2 LINE L1 5114 6148 -3 1568 220 3 0 chr15 47231584 47231916 -54148605 - MLT1A1-int LTR MaLR -1402 333 1 1838 194 72 16 chr15 47231931 47232317 -54148204 - MLT2B1 LTR ERVL -50 470 63 1778 112 0 8 chr15 47232321 47232570 -54147951 + AluSq SINE Alu 67 313 0 3747 237 48 20 chr15 47232597 47233822 -54146699 - L1M4 LINE L1 -1743 4403 3144 1583 195 122 3 chr15 47233978 47234362 -54146159 + MER63B DNA MER1_type 1 430 -6 425 266 98 80 chr15 47234363 47234539 -54145982 - L1MEd LINE L1 -1168 1322 1151 1776 141 36 36 chr15 47234539 47234844 -54145677 - AluJb SINE Alu -7 305 1 425 266 98 80 chr15 47234844 47234878 -54145643 - L1MEd LINE L1 -1339 1151 1119 2200 112 3 0 chr15 47234878 47235172 -54145349 + AluSq SINE Alu 1 295 -18 425 266 98 80 chr15 47235172 47235287 -54145234 - L1MEd LINE L1 -1371 1119 993 1051 296 94 19 chr15 47235319 47235789 -54144732 - LTR33 LTR ERVL -8 513 9 284 222 22 22 chr15 47235819 47235909 -54144612 - L1MEd LINE L1 -5394 725 636 29 47 0 0 chr15 47236238 47236281 -54144240 + AT_rich Low_complexity Low_complexity 1 43 0 2267 103 0 3 chr15 47236286 47236588 -54143933 + AluSg SINE Alu 1 301 -9 2588 151 31 19 chr15 47236590 47237073 -54143448 - L1MB3 LINE L1 -10 6173 5685 386 346 45 39 chr15 47237210 47237389 -54143132 + MER91A DNA MER1_type 1 180 -16 343 295 11 0 chr15 47237423 47237518 -54143003 - L1MEd LINE L1 -5944 175 80 1569 145 44 98 chr15 47237588 47237974 -54142547 - MLT1A1 LTR MaLR 0 365 1 2079 83 4 0 chr15 47238023 47238275 -54142246 - AluSp SINE Alu -60 253 1 1064 184 11 0 chr15 47238314 47238499 -54142022 + AluSg/x SINE Alu 126 312 0 2172 100 0 4 chr15 47238501 47238782 -54141739 + AluSx SINE Alu 1 280 -32 255 93 0 0 chr15 47238782 47238825 -54141696 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 753 154 43 0 chr15 47239137 47239254 -54141267 - FLAM_A SINE Alu -11 122 1 2248 104 0 7 chr15 47239476 47239783 -54140738 - AluSx SINE Alu -7 305 1 225 0 0 0 chr15 47241156 47241181 -54139340 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 723 87 0 0 chr15 47241180 47241284 -54139237 + (TA)n Simple_repeat Simple_repeat 1 104 0 2591 72 0 0 chr15 47241286 47241593 -54138928 - AluY SINE Alu -4 307 1 319 295 125 30 chr15 47242329 47242529 -54137992 - MIR SINE MIR -42 220 2 2158 92 11 3 chr15 47243717 47243999 -54136522 + AluSc SINE Alu 24 307 -2 813 269 113 45 chr15 47244017 47244344 -54136177 + L2 LINE L2 916 1276 -2038 2203 100 0 19 chr15 47244344 47244653 -54135868 - AluSx SINE Alu -9 303 1 813 269 113 45 chr15 47244653 47244722 -54135799 + L2 LINE L2 1276 1339 -1975 675 280 119 19 chr15 47245331 47245567 -54134954 - MIR SINE MIR -1 261 3 1507 268 62 72 chr15 47245758 47246517 -54134004 + L2 LINE L2 2303 3052 -261 896 249 42 117 chr15 47246525 47246982 -54133539 + MLT1G LTR MaLR 1 437 -131 1205 144 0 11 chr15 47247019 47247199 -54133322 - FRAM SINE Alu -6 170 1 692 220 82 69 chr15 47247267 47247499 -54133022 + L2 LINE L2 3074 3308 -5 2131 150 19 11 chr15 47247742 47248101 -54132420 + MLT1A1 LTR MaLR 4 365 0 2305 97 13 0 chr15 47249301 47249609 -54130912 - AluSx SINE Alu 0 312 1 206 271 29 57 chr15 47249770 47249840 -54130681 - L3 LINE CR1 -7 1570 1503 373 327 71 0 chr15 47250427 47250540 -54129981 + MIR3 SINE MIR 43 163 -45 262 348 30 30 chr15 47250574 47250738 -54129783 - MIR SINE MIR -50 212 49 28 48 0 0 chr15 47251773 47251815 -54128706 + AT_rich Low_complexity Low_complexity 1 42 0 5651 57 19 27 chr15 47251889 47252074 -54128447 - MER4E LTR ERV1 0 766 581 2181 107 4 0 chr15 47252074 47252377 -54128144 + AluSx SINE Alu 1 304 0 5651 57 19 27 chr15 47252377 47252961 -54127560 - MER4E LTR ERV1 -185 581 2 380 304 57 58 chr15 47255656 47256271 -54124250 - MER89-int LTR ERV1 -3070 3731 3118 1944 204 37 20 chr15 47256667 47257154 -54123367 - MER89-int LTR ERV1 -4062 4113 129 187 298 0 18 chr15 47258234 47258291 -54122230 + L3 LINE CR1 561 616 -961 4969 124 15 58 chr15 47259073 47259920 -54120601 - MER4E-int LTR ERV1 -5947 811 1 5550 78 38 28 chr15 47259920 47260264 -54120257 - MER4E LTR ERV1 0 766 427 2516 74 3 3 chr15 47260264 47260574 -54119947 + AluSp SINE Alu 1 310 -3 5550 78 38 28 chr15 47260574 47260987 -54119534 - MER4E LTR ERV1 -339 427 1 2267 93 33 3 chr15 47261097 47261397 -54119124 + AluSc SINE Alu 1 309 0 1937 112 45 0 chr15 47261659 47261963 -54118558 + AluSx SINE Alu 1 316 0 372 245 29 0 chr15 47262655 47262757 -54117764 - MIR3 SINE MIR -3 205 101 2240 97 0 20 chr15 47263019 47263318 -54117203 + AluSx SINE Alu 5 297 -15 2648 140 7 5 chr15 47263329 47263743 -54116778 + L1MB3 LINE L1 5769 6183 0 1157 195 178 10 chr15 47263753 47264051 -54116470 + L1ME3A LINE L1 5808 6155 -15 317 290 232 5 chr15 47264072 47264296 -54116225 + L3 LINE CR1 1097 1371 -206 424 306 101 5 chr15 47264353 47264552 -54115969 + MIR SINE MIR 30 247 -15 253 128 0 0 chr15 47264647 47264686 -54115835 - MIR SINE MIR -150 112 74 374 0 22 0 chr15 47264931 47264977 -54115544 + (TG)n Simple_repeat Simple_repeat 1 47 0 24 0 0 0 chr15 47264990 47265014 -54115507 + AT_rich Low_complexity Low_complexity 1 24 0 2433 97 3 0 chr15 47265142 47265451 -54115070 + AluSx SINE Alu 1 310 -2 336 239 37 18 chr15 47266366 47266475 -54114046 - LTR33 LTR ERVL -41 480 370 918 234 6 0 chr15 47266507 47266674 -54113847 - MER5A DNA MER1_type -1 188 21 1548 157 93 11 chr15 47266711 47266979 -54113542 + AluJo SINE Alu 12 301 -11 538 266 145 25 chr15 47266995 47267236 -54113285 - LTR33 LTR ERVL -250 271 2 216 249 130 43 chr15 47267332 47267485 -54113036 - MIR SINE MIR -58 204 32 1656 144 23 52 chr15 47267935 47267959 -54112562 + MER7A DNA MER2_type 1 24 -3014 2518 72 3 0 chr15 47267959 47268266 -54112255 - AluSp SINE Alu -5 308 1 1656 144 23 52 chr15 47268266 47268490 -54112031 + MER7A DNA MER2_type 24 240 -2798 2323 61 4 0 chr15 47268490 47268808 -54111713 - AluY SINE Alu 0 319 1 1656 144 23 52 chr15 47268808 47268863 -54111658 + MER7A DNA MER2_type 240 295 -51 1996 133 6 47 chr15 47268871 47269193 -54111328 + MER1B DNA MER1_type 31 339 0 300 208 0 0 chr15 47269194 47269247 -54111274 + MER7A DNA MER2_type 294 346 0 1816 129 116 6 chr15 47269570 47269881 -54110640 + MER47A DNA MER2_type 20 364 -2 2410 81 0 0 chr15 47270855 47271153 -54109368 + AluSc SINE Alu 1 298 -11 4322 187 40 57 chr15 47271628 47272800 -54107721 - L1MB8 LINE L1 -1 6177 4987 2443 67 3 7 chr15 47272800 47273100 -54107421 - AluY SINE Alu -12 299 1 4322 187 40 57 chr15 47273100 47273520 -54107001 - L1MB8 LINE L1 -1191 4987 4616 1449 223 3 26 chr15 47273520 47273829 -54106692 - AluJo SINE Alu -10 302 1 4322 187 40 57 chr15 47273829 47273954 -54106567 - L1MB8 LINE L1 -1562 4616 4490 261 57 0 0 chr15 47273963 47273998 -54106523 + (A)n Simple_repeat Simple_repeat 1 35 0 2082 119 11 0 chr15 47274014 47274299 -54106222 + AluSx SINE Alu 2 289 -23 4443 204 71 40 chr15 47274314 47274852 -54105669 + L1M4 LINE L1 2489 3009 -3137 1982 141 6 10 chr15 47274852 47275164 -54105357 + AluSq SINE Alu 1 311 -2 2126 100 0 37 chr15 47275167 47275467 -54105054 + AluSg SINE Alu 2 290 -20 4443 204 71 40 chr15 47275467 47275524 -54104997 + L1M4 LINE L1 3010 3064 -3082 2450 68 3 0 chr15 47275524 47275818 -54104703 + AluY SINE Alu 3 297 -14 4443 204 71 40 chr15 47275818 47276240 -54104281 + L1M4 LINE L1 3064 3471 -2675 911 165 0 0 chr15 47276240 47276373 -54104148 + FLAM_C SINE Alu 1 133 0 4443 204 71 40 chr15 47276373 47276710 -54103811 + L1M4 LINE L1 3471 3891 -2255 1848 153 3 20 chr15 47276716 47277017 -54103504 - AluJo SINE Alu -16 296 1 954 279 60 28 chr15 47277017 47277577 -54102944 - L1MEc LINE L1 -4127 2269 1689 1439 115 99 12 chr15 47277577 47277829 -54102692 + LTR65 LTR ERV1 391 664 -5 2388 98 3 0 chr15 47277881 47278186 -54102335 + AluSq SINE Alu 1 306 -7 1026 113 0 0 chr15 47278193 47278326 -54102195 + AluSg/x SINE Alu 144 276 -34 186 43 0 0 chr15 47278330 47278353 -54102168 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 273 277 160 0 chr15 47278353 47278447 -54102074 + L2 LINE L2 3162 3270 -2 2352 113 51 25 chr15 47278447 47278802 -54101719 + THE1B LTR MaLR 1 364 0 7163 114 23 39 chr15 47278802 47280210 -54100311 + THE1B-int LTR MaLR 1 1329 -322 2464 57 7 3 chr15 47280374 47280671 -54099850 + AluY SINE Alu 1 298 -13 446 255 43 12 chr15 47280929 47281090 -54099431 - L1ME4a LINE L1 0 6121 5956 424 228 73 37 chr15 47281100 47281236 -54099285 - L2 LINE L2 -12 3301 3161 326 193 42 84 chr15 47281264 47281383 -54099138 - L1ME4a LINE L1 -172 5949 5836 259 370 35 53 chr15 47281540 47281739 -54098782 - L2 LINE L2 -225 3047 2846 2315 104 3 0 chr15 47281739 47282037 -54098484 + AluSx SINE Alu 1 299 -13 2273 103 0 10 chr15 47282037 47282349 -54098172 + AluSq SINE Alu 1 309 -4 259 370 35 53 chr15 47282349 47282375 -54098146 - L2 LINE L2 -424 2848 2825 2327 91 7 0 chr15 47283500 47283809 -54096712 - AluSp SINE Alu -2 311 1 2142 130 0 7 chr15 47283817 47284125 -54096396 - AluSx SINE Alu -6 306 1 343 357 13 26 chr15 47284470 47284624 -54095897 + MIR3 SINE MIR 51 202 -6 719 193 25 97 chr15 47285063 47285231 -54095290 - Charlie1 DNA MER1_type -1 2760 2612 2030 127 23 3 chr15 47285231 47285531 -54094990 + AluSq SINE Alu 1 306 -7 719 193 25 97 chr15 47285531 47285600 -54094921 - Charlie1 DNA MER1_type -149 2612 2540 428 228 13 0 chr15 47285600 47285679 -54094842 + MER2 DNA MER2_type 2 81 -264 1185 176 105 40 chr15 47285791 47285915 -54094606 - Charlie1 DNA MER1_type -223 2538 2424 1805 209 118 32 chr15 47285915 47286380 -54094141 - MLT1D LTR MaLR 0 505 1 1185 176 105 40 chr15 47286380 47286578 -54093943 - Charlie1 DNA MER1_type -337 2424 2195 1209 112 0 0 chr15 47286588 47286757 -54093764 + LTR26B LTR ERV1 1 169 -362 2395 90 10 0 chr15 47286759 47287059 -54093462 - AluSx SINE Alu -9 303 1 1025 121 0 34 chr15 47287059 47287208 -54093313 - AluSq/x SINE Alu -168 144 1 2241 124 87 3 chr15 47287220 47287575 -54092946 + LTR26B LTR ERV1 147 531 0 1442 194 39 0 chr15 47287582 47287863 -54092658 - Charlie1 DNA MER1_type -584 2177 1886 1146 173 97 59 chr15 47287863 47288357 -54092164 + MER34B LTR ERV1 1 565 0 * 4313 174 156 104 chr15 47288357 47288449 -54092072 - Charlie1 DNA MER1_type -874 1887 1802 2622 42 3 0 chr15 47288449 47288758 -54091763 - AluY SINE Alu -1 310 1 2318 84 0 3 chr15 47288758 47289057 -54091464 - AluY SINE Alu -13 298 1 4313 174 156 104 chr15 47289057 47289134 -54091387 - Charlie1 DNA MER1_type -959 1802 1730 2412 91 3 0 chr15 47289134 47289443 -54091078 - AluSq SINE Alu -3 310 1 4313 174 156 104 chr15 47289443 47289867 -54090654 - Charlie1 DNA MER1_type -1031 1730 1329 2081 122 7 23 chr15 47289867 47290170 -54090351 - AluSx SINE Alu -14 298 1 4313 174 156 104 chr15 47290170 47290792 -54089729 - Charlie1 DNA MER1_type -1432 1329 740 2131 108 7 20 chr15 47290792 47290951 -54089570 - AluSx SINE Alu -19 293 138 1939 115 30 7 chr15 47290951 47291246 -54089275 - AluSg SINE Alu -8 302 1 2131 108 7 20 chr15 47291246 47291381 -54089140 - AluSx SINE Alu -174 138 3 4313 174 156 104 chr15 47291381 47291402 -54089119 - Charlie1 DNA MER1_type -2021 740 722 2203 108 0 3 chr15 47291402 47291708 -54088813 + AluSg SINE Alu 1 305 -5 4313 174 156 104 chr15 47291708 47291735 -54088786 - Charlie1 DNA MER1_type -2039 722 698 2245 93 14 0 chr15 47291735 47292025 -54088496 + AluSx SINE Alu 1 294 -18 4313 174 156 104 chr15 47292025 47292258 -54088263 - Charlie1 DNA MER1_type -2063 698 307 1122 185 33 65 chr15 47292347 47292623 -54087898 - LTR43 LTR ERV1 -141 461 195 1331 234 70 0 chr15 47292830 47293129 -54087392 - Charlie1 DNA MER1_type -2441 320 1 219 239 23 11 chr15 47293978 47294066 -54086455 + (CGG)n Simple_repeat Simple_repeat 1 89 0 235 233 105 83 chr15 47294389 47294586 -54085935 + MIR SINE MIR 30 229 -33 433 81 23 105 chr15 47294872 47294958 -54085563 - AluSg/x SINE Alu -17 295 217 2287 75 7 0 chr15 47294978 47295272 -54085249 - AluY SINE Alu -15 296 1 2152 92 14 3 chr15 47295286 47295570 -54084951 - AluSx SINE Alu -25 287 1 2259 106 0 20 chr15 47295946 47296249 -54084272 - AluSx SINE Alu -15 297 1 2026 107 37 23 chr15 47296767 47297066 -54083455 - AluSx SINE Alu -9 303 1 21 82 0 0 chr15 47297246 47297295 -54083226 + AT_rich Low_complexity Low_complexity 1 49 0 2173 103 0 35 chr15 47297946 47298257 -54082264 - AluSx SINE Alu -12 300 1 215 143 41 0 chr15 47298517 47298566 -54081955 + (TATG)n Simple_repeat Simple_repeat 4 54 0 411 276 188 0 chr15 47298705 47298875 -54081646 + L3 LINE CR1 1313 1514 -63 2100 98 0 21 chr15 47299122 47299408 -54081113 - AluSx SINE Alu -32 280 1 2127 139 0 0 chr15 47299657 47299960 -54080561 + AluSx SINE Alu 1 303 -9 317 201 120 19 chr15 47301075 47301179 -54079342 + L1MA10 LINE L1 6049 6324 -4 1896 139 7 13 chr15 47301217 47301518 -54079003 - AluJb SINE Alu -13 299 1 205 182 11 80 chr15 47302628 47302716 -54077805 + T-rich Low_complexity Low_complexity 3 84 0 2010 148 0 0 chr15 47303106 47303404 -54077117 + AluJb SINE Alu 1 298 -14 37 23 0 0 chr15 47303813 47303857 -54076664 + AT_rich Low_complexity Low_complexity 1 44 0 598 254 80 107 chr15 47303871 47304235 -54076286 - L1MC4a LINE L1 -1737 6071 5699 2324 94 0 3 chr15 47304235 47304533 -54075988 + AluSx SINE Alu 1 297 -15 2240 98 3 0 chr15 47304539 47304868 -54075653 + AluSp SINE Alu 1 330 0 598 254 80 107 chr15 47304868 47304908 -54075613 - L1MC4a LINE L1 -2114 5694 5670 1968 169 0 0 chr15 47305075 47305383 -54075138 + AluSx SINE Alu 1 308 -4 2591 56 0 0 chr15 47305391 47305693 -54074828 - AluY SINE Alu -9 302 1 1962 122 39 0 chr15 47305693 47305979 -54074542 - AluSg SINE Alu -13 297 1 2096 136 0 13 chr15 47306076 47306384 -54074137 - AluSq SINE Alu -9 304 1 774 165 0 24 chr15 47306428 47306555 -54073966 - FLAM_C SINE Alu -3 140 17 1870 135 0 8 chr15 47306632 47306899 -54073622 - AluSx SINE Alu -14 298 34 319 204 0 139 chr15 47306907 47307015 -54073506 - MIR SINE MIR -113 149 57 1663 175 7 29 chr15 47307324 47307633 -54072888 + AluJo SINE Alu 1 302 -10 543 253 186 9 chr15 47307953 47308050 -54072471 + MIR SINE MIR 2 81 -181 2454 75 0 10 chr15 47308050 47308358 -54072163 - AluY SINE Alu -6 305 1 543 253 186 9 chr15 47308358 47308481 -54072040 + MIR SINE MIR 81 261 -1 314 127 139 25 chr15 47309419 47309498 -54071023 + MIR SINE MIR 120 207 -55 182 353 0 0 chr15 47310701 47310769 -54069752 + MIR SINE MIR 19 86 -122 2079 106 31 14 chr15 47310914 47311206 -54069315 - AluSx SINE Alu -15 297 1 198 0 0 0 chr15 47311410 47311432 -54069089 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2019 130 0 3 chr15 47311432 47311717 -54068804 - AluSg1 SINE Alu -25 284 1 2106 108 24 0 chr15 47311883 47312171 -54068350 - AluSg SINE Alu -15 295 1 186 43 0 0 chr15 47312939 47312962 -54067559 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 279 309 209 22 chr15 47312981 47313120 -54067401 + L3 LINE CR1 1406 1570 -7 2037 128 3 7 chr15 47313559 47313849 -54066672 - AluSx SINE Alu -3 309 21 26 30 0 0 chr15 47313854 47313887 -54066634 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chr15 47315080 47315115 -54065406 + AT_rich Low_complexity Low_complexity 1 35 0 2233 95 3 0 chr15 47315354 47315648 -54064873 - AluSp SINE Alu -18 295 1 1189 192 126 53 chr15 47316519 47316569 -54063952 - MER58B DNA MER1_type -2079 341 296 2318 84 3 0 chr15 47316569 47316854 -54063667 + AluSg SINE Alu 1 286 -24 180 0 0 0 chr15 47316861 47316881 -54063640 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1189 192 126 53 chr15 47316881 47317140 -54063381 - MER58B DNA MER1_type -2129 291 1 2213 105 7 0 chr15 47317264 47317560 -54062961 - AluSx SINE Alu -14 298 1 363 188 70 102 chr15 47317577 47317705 -54062816 - L1MC4 LINE L1 -17 8025 7902 21 0 0 0 chr15 47317725 47317746 -54062775 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr15 47318149 47318171 -54062350 + AT_rich Low_complexity Low_complexity 1 22 0 335 352 116 44 chr15 47320357 47320607 -54059914 - L2 LINE L2 -20 3252 2985 197 391 14 0 chr15 47321341 47321410 -54059111 - L2 LINE L2 -49 3223 3154 25 0 0 0 chr15 47321666 47321691 -54058830 + AT_rich Low_complexity Low_complexity 1 25 0 277 253 47 30 chr15 47321710 47321845 -54058676 - L1MC4a LINE L1 0 6174 2380 2185 107 0 20 chr15 47321936 47322234 -54058287 + AluSg SINE Alu 1 292 -18 332 268 14 0 chr15 47322474 47322545 -54057976 + L2 LINE L2 3154 3225 -47 298 330 55 86 chr15 47322703 47323051 -54057470 - L2 LINE L2 -15 3257 2921 3061 223 101 47 chr15 47323299 47324212 -54056309 + L1MDa LINE L1 35 985 -5555 21 36 0 0 chr15 47324346 47324374 -54056147 + AT_rich Low_complexity Low_complexity 1 28 0 1664 124 0 0 chr15 47324473 47324698 -54055823 + AluSx SINE Alu 1 225 -87 885 179 28 17 chr15 47325148 47325327 -54055194 - MER58C DNA MER1_type -6 209 29 592 231 7 42 chr15 47326352 47326495 -54054026 + L2 LINE L2 3176 3313 0 2184 133 0 0 chr15 47327198 47327499 -54053022 - AluSx SINE Alu -11 301 1 251 176 59 20 chr15 47327874 47327976 -54052545 + (TA)n Simple_repeat Simple_repeat 2 107 0 2010 139 14 23 chr15 47328173 47328519 -54052002 - L1PA16 LINE L1 -6 6160 5818 21 36 0 0 chr15 47328693 47328721 -54051800 + AT_rich Low_complexity Low_complexity 1 28 0 462 227 10 10 chr15 47328943 47329040 -54051481 - Tigger7 DNA MER2_type -2 2585 2489 * 1381 169 89 0 chr15 47329038 47329275 -54051246 - Tigger7 DNA MER2_type -466 267 10 27 29 0 0 chr15 47331774 47331808 -54048713 + AT_rich Low_complexity Low_complexity 1 34 0 1296 65 0 0 chr15 47332171 47332326 -54048195 + AluSx SINE Alu 1 155 -157 390 98 0 0 chr15 47332327 47332403 -54048118 + Alu SINE Alu 230 305 0 2112 126 7 7 chr15 47332416 47332717 -54047804 + AluJb SINE Alu 1 301 -11 2497 64 3 0 chr15 47333973 47334271 -54046250 + AluSp SINE Alu 1 299 -14 1960 125 3 10 chr15 47334429 47334725 -54045796 + AluSx SINE Alu 19 312 0 191 241 69 0 chr15 47335827 47335885 -54044636 - MIR SINE MIR -22 240 179 2894 98 9 5 chr15 47335891 47336311 -54044210 - L1PA10 LINE L1 0 6168 5747 1822 232 45 26 chr15 47336320 47336789 -54043732 - MLT1E LTR MaLR 0 593 116 2209 129 0 0 chr15 47337000 47337309 -54043212 - AluSx SINE Alu -3 309 1 714 289 79 65 chr15 47337368 47337513 -54043008 - L1MC4 LINE L1 -125 7917 7776 2339 84 0 7 chr15 47337513 47337812 -54042709 + AluSc SINE Alu 3 299 -10 714 289 79 65 chr15 47337812 47338224 -54042297 - L1MC4 LINE L1 -266 7776 7352 668 178 54 0 chr15 47338224 47338353 -54042168 + FLAM_C SINE Alu 1 136 -7 427 252 84 0 chr15 47338353 47338508 -54042013 - L1MC4 LINE L1 -685 7357 7190 4251 173 7 18 chr15 47338610 47339340 -54041181 + MER44D DNA MER2_type 5 598 -7 269 279 0 0 chr15 47339286 47339347 -54041174 - MER2 DNA MER2_type -284 61 1 * 413 240 10 0 chr15 47339347 47339451 -54041070 - L1M2 LINE L1 -1807 5041 4937 * 1009 197 71 0 chr15 47339448 47339702 -54040819 - L1M2 LINE L1 -2402 4446 4175 207 0 0 0 chr15 47339740 47339763 -54040758 + (TTG)n Simple_repeat Simple_repeat 2 24 0 878 247 18 0 chr15 47339770 47339993 -54040528 - L1M2 LINE L1 -3232 3616 3390 6000 40 18 0 chr15 47339994 47340272 -54040249 - L1PA5 LINE L1 -17 6137 5860 1194 255 69 18 chr15 47340272 47340851 -54039670 - L1MC2 LINE L1 -486 6252 2932 2206 210 238 3 chr15 47340856 47341460 -54039061 - L1MC2 LINE L1 -5773 767 22 1951 128 80 14 chr15 47341721 47342073 -54038448 - THE1C LTR MaLR 0 375 1 1671 223 141 76 chr15 47342116 47342891 -54037630 - LTR1B LTR ERV1 0 826 2 2163 122 16 0 chr15 47342950 47343254 -54037267 - AluSx SINE Alu -3 309 1 523 275 51 11 chr15 47343258 47343436 -54037085 + MER5A DNA MER1_type 2 186 -3 2103 104 4 0 chr15 47344240 47344508 -54036013 + AluSp SINE Alu 29 297 -16 14832 188 36 15 chr15 47344508 47347300 -54033221 + L1MA4A LINE L1 2203 5166 -1779 225 0 0 0 chr15 47347300 47347325 -54033196 + (CAATA)n Simple_repeat Simple_repeat 2 26 0 14832 188 36 15 chr15 47347325 47349114 -54031407 + L1MA4A LINE L1 5166 6916 -29 243 108 27 0 chr15 47349239 47349276 -54031245 - Alu SINE Alu -263 38 1 4049 219 47 11 chr15 47349277 47350054 -54030467 - L1M2 LINE L1 -4581 2268 1445 2154 149 68 29 chr15 47350054 47350238 -54030283 + MSTA LTR MaLR 1 176 -252 333 0 0 0 chr15 47350238 47350275 -54030246 + (CA)n Simple_repeat Simple_repeat 1 37 0 2154 149 68 29 chr15 47350275 47350500 -54030021 + MSTA LTR MaLR 176 426 -2 4049 219 47 11 chr15 47350500 47350729 -54029792 - L1M2 LINE L1 -5404 1445 1226 240 204 0 0 chr15 47350738 47350782 -54029739 - LTR54B LTR ERV1 -46 452 409 609 250 93 0 chr15 47350817 47350957 -54029564 - MER21B LTR ERV1 -373 490 338 2223 105 0 10 chr15 47351203 47351499 -54029022 - AluSg SINE Alu -15 295 3 2378 85 3 3 chr15 47351814 47352119 -54028402 - AluSq SINE Alu -8 305 1 1026 231 22 6 chr15 47352469 47352825 -54027696 + MLT1D LTR MaLR 1 391 -114 246 367 75 8 chr15 47352863 47352983 -54027538 + L2 LINE L2 3128 3255 -17 1774 153 10 34 chr15 47353107 47353402 -54027119 - AluSx SINE Alu -24 288 1 1738 141 36 4 chr15 47353904 47354200 -54026321 - AluSx SINE Alu 0 305 1 21 36 0 0 chr15 47354223 47354251 -54026270 + AT_rich Low_complexity Low_complexity 1 28 0 2585 74 20 3 chr15 47354288 47354640 -54025881 - L1PA13 LINE L1 -2 6161 5804 3395 102 44 58 chr15 47354796 47354939 -54025582 - L1MA5A LINE L1 -3 6294 6150 2426 70 0 3 chr15 47354939 47355241 -54025280 - AluY SINE Alu -10 301 1 3395 102 44 58 chr15 47355241 47355736 -54024785 - L1MA5A LINE L1 -147 6150 5665 6572 185 21 26 chr15 47355737 47357481 -54023040 - L1 LINE L1 -3588 3200 1468 2219 109 0 0 chr15 47357481 47357794 -54022727 - AluSx SINE Alu 0 313 1 6572 185 21 26 chr15 47357794 47358191 -54022330 - L1 LINE L1 -5320 1468 1071 4573 175 25 24 chr15 47358691 47359252 -54021269 - L1MB1 LINE L1 -1 6167 5608 2173 132 0 0 chr15 47359252 47359548 -54020973 - AluSx SINE Alu -16 296 1 1872 167 3 3 chr15 47359549 47359842 -54020679 - AluJo SINE Alu -12 300 8 4573 175 25 24 chr15 47359842 47360406 -54020115 - L1MB1 LINE L1 -560 5608 5034 2152 113 3 0 chr15 47360406 47360688 -54019833 + AluSp SINE Alu 1 283 -30 4573 175 25 24 chr15 47360688 47361068 -54019453 - L1MB1 LINE L1 -1134 5034 4656 803 171 0 0 chr15 47361111 47361234 -54019287 + FLAM_C SINE Alu 1 123 -20 321 26 0 0 chr15 47361239 47361277 -54019244 + (GA)n Simple_repeat Simple_repeat 2 39 0 3897 186 51 16 chr15 47361277 47362199 -54018322 + L1 LINE L1 3581 4534 -1612 1143 117 0 0 chr15 47362545 47362678 -54017843 + (C)n Simple_repeat Simple_repeat 1 313 0 1143 117 0 0 chr15 47362678 47362858 -54017663 + (C)n Simple_repeat Simple_repeat 1 180 0 351 247 0 17 chr15 47362897 47363075 -54017446 + C-rich Low_complexity Low_complexity 3 177 0 36 70 0 0 chr15 47363248 47363319 -54017202 + AT_rich Low_complexity Low_complexity 1 71 0 276 267 22 22 chr15 47364026 47364116 -54016405 + L3 LINE CR1 1429 1518 -59 1390 219 102 43 chr15 47364120 47364412 -54016109 + MSTD LTR MaLR 1 321 -75 2119 125 0 0 chr15 47364412 47364693 -54015828 - AluSx SINE Alu -7 305 25 1390 219 102 43 chr15 47364693 47364774 -54015747 + MSTD LTR MaLR 321 396 0 3958 229 36 72 chr15 47364776 47366101 -54014420 + MSTD-int LTR MaLR 2 1279 -456 1852 208 97 34 chr15 47366251 47366727 -54013794 + MSTD-int LTR MaLR 1230 1735 0 2037 169 53 11 chr15 47366727 47366896 -54013625 + MSTD LTR MaLR 1 161 -235 2257 111 3 3 chr15 47366896 47367202 -54013319 + AluSp SINE Alu 1 306 -7 2037 169 53 11 chr15 47367202 47367410 -54013111 + MSTD LTR MaLR 161 394 -2 210 296 54 65 chr15 47367483 47367641 -54012880 + MER5B DNA MER1_type 2 174 -15 300 299 215 0 chr15 47367678 47367785 -54012736 - MIR3 SINE MIR -51 157 28 503 270 95 7 chr15 47367895 47368032 -54012489 + MIR SINE MIR 5 153 -109 1096 266 83 31 chr15 47368116 47368574 -54011947 - MLT1J LTR MaLR -4 507 26 21311 38 5 1 chr15 47369398 47372819 -54007702 - L1PA5 LINE L1 0 6154 2726 791 246 75 24 chr15 47373253 47373398 -54007123 - Tigger5 DNA MER2_type 0 2323 2187 2185 126 3 3 chr15 47373398 47373707 -54006814 - AluSq SINE Alu -4 309 1 791 246 75 24 chr15 47373707 47373895 -54006626 - Tigger5 DNA MER2_type -136 2187 1 220 304 38 0 chr15 47374071 47374150 -54006371 + MIR SINE MIR 181 262 0 422 276 129 9 chr15 47374218 47374450 -54006071 - MARNA DNA Mariner -307 279 20 1457 156 15 95 chr15 47375417 47375774 -54004747 - AluSx SINE Alu 0 312 1 1641 209 88 19 chr15 47375937 47376357 -54004164 - LTR16A LTR ERVL -1 449 1 254 116 0 0 chr15 47377076 47377119 -54003402 - L1MA9 LINE L1 -4 6308 6266 1020 153 20 7 chr15 47377119 47377469 -54003052 + Tigger2 DNA MER2_type 4 2704 -14 461 68 82 0 chr15 47377472 47377545 -54002976 - L1MA9 LINE L1 -41 6271 6193 279 128 0 21 chr15 47377917 47377964 -54002557 + LTR56 LTR ERV1 349 394 -51 236 102 20 0 chr15 47380387 47380436 -54000085 - L1M4 LINE L1 -1123 5023 4974 1999 135 42 0 chr15 47380489 47380778 -53999743 - AluSx SINE Alu -11 301 1 400 199 11 105 chr15 47380891 47381072 -53999449 + L1MEc LINE L1 1079 1242 -5154 2266 117 0 28 chr15 47381073 47381390 -53999131 - AluSx SINE Alu -4 308 1 194 289 141 27 chr15 47381544 47381693 -53998828 - L2 LINE L2 -1914 1400 1235 2376 99 0 0 chr15 47383442 47383734 -53996787 + AluSg SINE Alu 1 292 -18 31 26 0 0 chr15 47383838 47383876 -53996645 + AT_rich Low_complexity Low_complexity 1 38 0 413 333 64 25 chr15 47384387 47384669 -53995852 - L2 LINE L2 -5 3308 3016 1510 54 0 0 chr15 47384796 47384981 -53995540 - L1PA3 LINE L1 -2 6153 5969 1913 168 7 0 chr15 47385231 47385534 -53994987 - AluJb SINE Alu -7 305 1 22 0 0 0 chr15 47385905 47385927 -53994594 + AT_rich Low_complexity Low_complexity 1 22 0 4183 150 50 25 chr15 47386432 47386979 -53993542 - L1MB3 LINE L1 -2 6181 5604 2025 139 0 7 chr15 47386979 47387274 -53993247 - AluSx SINE Alu -19 293 1 4183 150 50 25 chr15 47387274 47387559 -53992962 - L1MB3 LINE L1 -579 5604 5328 25 31 0 0 chr15 47388040 47388072 -53992449 + AT_rich Low_complexity Low_complexity 1 32 0 26 82 0 0 chr15 47389112 47389173 -53991348 + AT_rich Low_complexity Low_complexity 1 61 0 2426 74 0 7 chr15 47389983 47390279 -53990242 - AluSp SINE Alu -19 294 1 4928 165 71 27 chr15 47391767 47392678 -53987843 - L1MC1 LINE L1 -19 6383 5514 183 100 0 0 chr15 47392678 47392708 -53987813 + (TG)n Simple_repeat Simple_repeat 1 30 0 4928 165 71 27 chr15 47392708 47393204 -53987317 - L1MC1 LINE L1 -888 5514 4915 2807 121 29 2 chr15 47393204 47393619 -53986902 - MSTB LTR MaLR 0 426 1 4928 165 71 27 chr15 47393619 47393931 -53986590 - L1MC1 LINE L1 -1487 4915 4618 3111 234 34 22 chr15 47393925 47394218 -53986303 - L1MC1 LINE L1 -1930 4285 3997 * 2406 97 3 0 chr15 47394218 47394527 -53985994 - AluSg SINE Alu 0 310 1 3111 234 34 22 chr15 47394527 47394615 -53985906 - L1MC1 LINE L1 -2218 3997 3912 2133 130 3 17 chr15 47394615 47394915 -53985606 - AluSx SINE Alu -16 296 1 3111 234 34 22 chr15 47394915 47395494 -53985027 - L1MC1 LINE L1 -2303 3912 3312 263 211 106 21 chr15 47397114 47397256 -53983265 - L1MC5 LINE L1 -36 7925 7772 697 221 43 75 chr15 47397269 47397522 -53982999 - L1ME2 LINE L1 -20 6144 5900 2352 109 0 0 chr15 47397522 47397824 -53982697 - AluSq SINE Alu -11 302 1 1730 192 21 0 chr15 47398290 47398581 -53981940 - AluJb SINE Alu -15 297 1 760 224 33 19 chr15 47398599 47398813 -53981708 + MER112 DNA MER1_type 5 221 -39 240 255 19 47 chr15 47398827 47398933 -53981588 + MLT1H LTR MaLR 431 533 -16 340 266 28 55 chr15 47399050 47399159 -53981362 + MIR3 SINE MIR 87 192 -16 907 262 104 37 chr15 47399545 47399900 -53980621 + MLT1J2 LTR MaLR 72 450 0 1286 160 101 0 chr15 47399919 47400206 -53980315 + MER33 DNA MER1_type 9 324 0 1400 217 34 118 chr15 47400452 47400607 -53979914 - L1MC1 LINE L1 -5298 1098 932 2342 80 3 3 chr15 47400607 47400906 -53979615 - AluY SINE Alu -12 299 1 1400 217 34 118 chr15 47400906 47401237 -53979284 - L1MC1 LINE L1 -5464 932 677 3274 102 4 4 chr15 47401237 47401716 -53978805 + L1PA14 LINE L1 5683 6161 0 1400 217 34 118 chr15 47401716 47401874 -53978647 - L1MC1 LINE L1 -5719 677 507 841 198 31 27 chr15 47401899 47402121 -53978400 - L1MC1 LINE L1 -6130 266 44 23 0 0 0 chr15 47402642 47402665 -53977856 + AT_rich Low_complexity Low_complexity 1 23 0 245 136 0 0 chr15 47402896 47402940 -53977581 - LTR54 LTR ERV1 -25 485 442 5620 131 23 57 chr15 47402967 47404926 -53975595 - L1MA5 LINE L1 -2 6298 4403 6848 169 90 24 chr15 47404990 47405603 -53974918 - L1PA16 LINE L1 -39 6127 5556 1857 105 3 114 chr15 47405603 47405937 -53974584 - AluSp SINE Alu -16 297 1 6848 169 90 24 chr15 47405937 47406102 -53974419 - L1PA16 LINE L1 -610 5556 5403 2556 54 0 0 chr15 47406102 47406400 -53974121 - AluY SINE Alu -13 298 1 6848 169 90 24 chr15 47406400 47408061 -53972460 - L1PA16 LINE L1 -763 5403 3492 183 42 0 0 chr15 47408061 47408085 -53972436 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6848 169 90 24 chr15 47408085 47408143 -53972378 - L1PA16 LINE L1 -2674 3492 3439 2515 265 25 15 chr15 47408135 47408890 -53971631 - L1M2 LINE L1 -5033 1816 1054 * 404 322 13 0 chr15 47409063 47409212 -53971309 - MER117 DNA MER1_type -36 161 11 2215 107 14 0 chr15 47409235 47409526 -53970995 + AluSq SINE Alu 1 295 -18 436 295 113 8 chr15 47409708 47409929 -53970592 - MIR SINE MIR -10 252 14 214 182 0 23 chr15 47410921 47410965 -53969556 + CT-rich Low_complexity Low_complexity 3 45 0 2226 105 3 16 chr15 47410969 47411274 -53969247 - AluSx SINE Alu -11 301 1 316 167 15 15 chr15 47411274 47411340 -53969181 - L1 LINE L1 -1777 5071 5006 2744 138 30 56 chr15 47411346 47411416 -53969105 - L1 LINE L1 -4399 2450 2380 2347 93 0 13 chr15 47411416 47411718 -53968803 - AluY SINE Alu -13 298 1 2744 138 30 56 chr15 47411718 47412143 -53968378 - L1 LINE L1 -4469 2380 1968 2348 108 0 0 chr15 47412143 47412439 -53968082 - AluSx SINE Alu -16 296 1 2744 138 30 56 chr15 47412439 47412500 -53968021 - L1 LINE L1 -4881 1968 1907 1946 133 53 0 chr15 47412508 47412793 -53967728 - AluSx SINE Alu -10 302 3 21983 134 24 19 chr15 47412793 47413620 -53966901 - L1 LINE L1 -3723 3842 3020 2102 59 12 4 chr15 47413620 47413873 -53966648 - AluSc SINE Alu -2 307 53 21983 134 24 19 chr15 47413873 47416699 -53963822 - L1 LINE L1 -4545 3020 173 43858 31 22 2 chr15 47416715 47422743 -53957778 - L1PA3 LINE L1 0 6155 4 1004 133 24 0 chr15 47422743 47422908 -53957613 - L1 LINE L1 -7383 182 14 11198 164 23 20 chr15 47422909 47424824 -53955697 - L1 LINE L1 -4929 1920 1 4013 211 104 17 chr15 47424823 47425054 -53955467 - L1M4 LINE L1 -1089 5057 4848 * 2110 125 33 27 chr15 47425054 47425389 -53955132 + MER1B DNA MER1_type 1 337 0 4013 211 104 17 chr15 47425389 47426221 -53954300 - L1M4 LINE L1 -1298 4848 3901 25 31 0 0 chr15 47427214 47427246 -53953275 + AT_rich Low_complexity Low_complexity 1 32 0 312 254 0 0 chr15 47427887 47427950 -53952571 + MER94 DNA DNA 72 134 0 730 215 46 76 chr15 47428236 47428434 -53952087 + LTR33A LTR ERVL 294 485 -38 1444 51 0 0 chr15 47428434 47428609 -53951912 - L1PA8 LINE L1 -7 6165 5991 730 215 46 76 chr15 47428609 47428647 -53951874 + LTR33A LTR ERVL 485 523 0 2659 95 62 61 chr15 47429956 47430312 -53950209 + MER4E LTR ERV1 1 355 -411 2451 89 0 0 chr15 47430312 47430625 -53949896 + AluSq SINE Alu 1 313 0 2659 95 62 61 chr15 47430625 47430878 -53949643 + MER4E LTR ERV1 355 766 0 204 67 0 0 chr15 47430972 47431002 -53949519 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 401 320 8 8 chr15 47434548 47434673 -53945848 - MER5A DNA MER1_type -10 179 55 286 253 30 10 chr15 47435120 47435219 -53945302 + L1MB8 LINE L1 5996 6096 -82 4614 98 45 6 chr15 47435229 47435933 -53944588 - Tigger3(Golem) DNA MER2_type -20 3009 2278 677 179 0 0 chr15 47435925 47436031 -53944490 - Tigger3(Golem) DNA MER2_type -2921 108 3 * 373 125 12 38 chr15 47436044 47436124 -53944397 + L1MB8 LINE L1 6101 6178 0 22 0 0 0 chr15 47436171 47436193 -53944328 + AT_rich Low_complexity Low_complexity 1 22 0 388 243 128 34 chr15 47436644 47436792 -53943729 - MIR3 SINE MIR -24 184 23 2397 158 21 32 chr15 47437747 47438178 -53942343 + MSTB LTR MaLR 1 426 0 1907 134 3 35 chr15 47439096 47439410 -53941111 + AluJo SINE Alu 1 304 -8 2248 115 0 0 chr15 47441996 47442304 -53938217 - AluSx SINE Alu 0 308 1 226 229 0 0 chr15 47442533 47442581 -53937940 - MIR SINE MIR -59 203 156 21 57 0 0 chr15 47443544 47443579 -53936942 + AT_rich Low_complexity Low_complexity 1 35 0 1292 225 73 31 chr15 47444147 47444569 -53935952 + HsTC2 DNA Tc2 1283 1898 0 691 297 48 23 chr15 47445253 47445563 -53934958 + MARNA DNA Mariner 255 572 -14 189 203 130 29 chr15 47445675 47445744 -53934777 + L2 LINE L2 3168 3243 -29 26 23 0 23 chr15 47445925 47445948 -53934573 + AT_rich Low_complexity Low_complexity 1 24 -19 1956 150 7 0 chr15 47445948 47446235 -53934286 + AluSx SINE Alu 1 289 -23 26 23 0 23 chr15 47446235 47446255 -53934266 + AT_rich Low_complexity Low_complexity 24 43 0 650 174 23 30 chr15 47446264 47446396 -53934125 - FLAM_A SINE Alu -2 131 1 1957 210 57 21 chr15 47446396 47446976 -53933545 - Charlie2 DNA MER1_type -32 2830 2230 1848 148 0 0 chr15 47447107 47447403 -53933118 + AluJb SINE Alu 22 317 0 546 159 91 0 chr15 47447408 47447496 -53933025 + AluJb SINE Alu 129 224 -88 23 0 0 0 chr15 47447829 47447852 -53932669 + AT_rich Low_complexity Low_complexity 1 23 0 1576 189 32 20 chr15 47447889 47448321 -53932200 + MLT1D LTR MaLR 1 497 -8 427 245 28 0 chr15 47448392 47448498 -53932023 + MER81 DNA DNA 3 111 -3 475 294 14 0 chr15 47449408 47449554 -53930967 - MER103 DNA DNA -9 157 10 272 118 0 20 chr15 47449554 47449605 -53930916 + (TA)n Simple_repeat Simple_repeat 2 51 0 2345 98 0 7 chr15 47451250 47451557 -53928964 - AluSg SINE Alu -5 305 1 1409 233 142 57 chr15 47452557 47453170 -53927351 + Charlie7 DNA MER1_type 56 720 -1892 236 270 81 86 chr15 47453281 47453455 -53927066 - L2 LINE L2 -838 2476 2304 180 313 0 12 chr15 47453468 47453548 -53926973 + L2 LINE L2 2317 2395 -919 2491 62 3 10 chr15 47453755 47454059 -53926462 - AluSg SINE Alu -8 302 1 476 311 25 0 chr15 47454783 47454953 -53925568 - MIR SINE MIR -65 143 17 422 250 45 80 chr15 47455516 47455716 -53924805 - MIR SINE MIR -43 219 27 2832 10 0 16 chr15 47455859 47456171 -53924350 + AluYa5 SINE Alu 1 307 -4 1833 299 92 27 chr15 47456683 47457243 -53923278 - L1ME LINE L1 -368 5794 5272 2193 113 3 3 chr15 47457243 47457535 -53922986 - AluSp SINE Alu -21 292 1 1833 299 92 27 chr15 47457535 47458085 -53922436 - L1ME LINE L1 -890 5272 4759 2537 75 3 0 chr15 47458085 47458390 -53922131 - AluSp SINE Alu -7 306 1 1833 299 92 27 chr15 47458390 47459354 -53921167 - L1ME LINE L1 -1403 4759 3545 249 264 78 90 chr15 47461801 47461968 -53918553 + MIR3 SINE MIR 25 189 -19 1859 149 47 90 chr15 47462666 47463110 -53917411 + MER61B LTR ERV1 1 425 0 239 208 21 0 chr15 47463335 47463383 -53917138 + MER20B DNA MER1_type 30 78 -705 200 310 113 55 chr15 47464180 47464509 -53916012 + L2 LINE L2 2832 3179 -93 1017 144 5 43 chr15 47464791 47464978 -53915543 + FRAM SINE Alu 1 174 -2 1589 236 106 35 chr15 47465076 47465706 -53914815 - HAL1 LINE L1 -127 2380 1706 256 190 228 0 chr15 47465723 47465802 -53914719 - MER58 DNA MER1_type -6 2414 2318 303 196 0 0 chr15 47465849 47465905 -53914616 - MER58 DNA MER1_type -168 56 1 782 254 70 12 chr15 47465909 47466165 -53914356 - HAL1 LINE L1 -809 1698 1428 22 0 0 0 chr15 47467137 47467159 -53913362 + AT_rich Low_complexity Low_complexity 1 22 0 4467 118 45 1 chr15 47467202 47467915 -53912606 - Tigger3(Golem) DNA MER2_type -2 3027 2284 309 227 216 0 chr15 47467916 47468004 -53912517 - Tigger3(Golem) DNA MER2_type -2922 107 1 186 43 0 0 chr15 47469278 47469301 -53911220 + (TG)n Simple_repeat Simple_repeat 1 23 0 313 284 39 58 chr15 47469355 47469510 -53911011 - L1MB8 LINE L1 -293 5885 5734 350 204 97 53 chr15 47469559 47469672 -53910849 + MIR SINE MIR 66 183 -79 228 355 139 33 chr15 47469699 47470153 -53910368 - L2 LINE L2 -853 2461 1960 21 0 0 0 chr15 47470716 47470737 -53909784 + AT_rich Low_complexity Low_complexity 1 21 0 692 271 104 5 chr15 47471654 47471875 -53908646 + MIR SINE MIR 15 257 -5 1909 98 83 0 chr15 47471986 47472262 -53908259 - AluSx SINE Alu -13 299 1 207 0 0 0 chr15 47473014 47473037 -53907484 + (TA)n Simple_repeat Simple_repeat 2 24 0 1316 239 92 66 chr15 47473887 47474309 -53906212 + LTR16A LTR ERVL 18 450 0 252 200 0 0 chr15 47474309 47474364 -53906157 + (TCCA)n Simple_repeat Simple_repeat 1 55 0 182 191 88 88 chr15 47474400 47474468 -53906053 - L2 LINE L2 -62 3210 3143 182 348 42 59 chr15 47474568 47474686 -53905835 + L2 LINE L2 3112 3227 -45 396 59 0 0 chr15 47476771 47476822 -53903699 + (CA)n Simple_repeat Simple_repeat 1 51 0 502 245 260 10 chr15 47477007 47477207 -53903314 - MIR SINE MIR 0 262 13 211 258 200 17 chr15 47478425 47478545 -53901976 + MIR SINE MIR 63 204 -58 202 194 28 46 chr15 47479765 47479873 -53900648 + (CGG)n Simple_repeat Simple_repeat 2 107 0 272 263 21 32 chr15 47480298 47480393 -53900128 + G-rich Low_complexity Low_complexity 5 98 0 397 270 68 33 chr15 47481096 47481285 -53899236 - MIR SINE MIR -14 194 1 420 257 181 7 chr15 47481470 47481614 -53898907 + MIR SINE MIR 82 250 -12 2342 87 3 0 chr15 47481705 47482016 -53898505 + AluSp SINE Alu 1 312 -1 370 248 101 31 chr15 47483712 47483841 -53896680 - L1ME4a LINE L1 -7 6114 5977 826 244 65 0 chr15 47483862 47484091 -53896430 - L1ME4a LINE L1 -224 5897 5654 194 192 19 0 chr15 47484519 47484571 -53895950 + GA-rich Low_complexity Low_complexity 2 54 0 521 291 271 63 chr15 47485006 47485978 -53894543 + L3 LINE CR1 191 1364 -213 1336 231 134 26 chr15 47486007 47486436 -53894085 + LTR33A LTR ERVL 44 490 -33 2198 107 3 0 chr15 47486436 47486745 -53893776 + AluSp SINE Alu 2 311 -2 2432 74 0 0 chr15 47486760 47487071 -53893450 + AluY SINE Alu 1 311 0 372 217 94 38 chr15 47487231 47487337 -53893184 - MIR SINE MIR -79 129 18 493 282 127 0 chr15 47487674 47487816 -53892705 - MIR3 SINE MIR -29 179 20 216 273 0 0 chr15 47488074 47488151 -53892370 + CT-rich Low_complexity Low_complexity 3 79 0 222 323 68 53 chr15 47489122 47489459 -53891062 + L2 LINE L2 2367 2708 -606 393 214 48 0 chr15 47490947 47491031 -53889490 + LTR16C LTR ERVL 404 491 0 270 0 0 0 chr15 47491513 47491543 -53888978 + (T)n Simple_repeat Simple_repeat 1 30 0 1492 224 21 45 chr15 47492021 47492400 -53888121 + MLT1A2 LTR MaLR 1 370 -4 1268 256 96 54 chr15 47492597 47493168 -53887353 + MLT1G1 LTR MaLR 1 595 0 234 293 9 69 chr15 47493821 47493937 -53886584 - MIR SINE MIR -6 256 148 947 291 76 20 chr15 47495072 47495532 -53884989 - L2 LINE L2 -2 3311 2826 769 210 117 37 chr15 47496024 47496238 -53884283 - MIR SINE MIR -13 249 19 239 313 0 30 chr15 47496737 47496804 -53883717 - L2 LINE L2 -21 3251 3187 1913 100 25 62 chr15 47497777 47498097 -53882424 - AluSg SINE Alu -2 308 1 261 335 148 29 chr15 47498675 47499054 -53881467 + L2 LINE L2 2548 2971 -343 238 329 14 0 chr15 47499261 47499334 -53881187 + L2 LINE L2 3226 3299 -14 210 71 0 0 chr15 47499335 47499363 -53881158 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 193 285 215 38 chr15 47499633 47499819 -53880702 + L3 LINE CR1 1344 1562 -15 1181 167 29 9 chr15 47500238 47500448 -53880073 - MER20 DNA MER1_type -5 214 1 506 288 151 14 chr15 47500573 47500792 -53879729 + MIR SINE MIR 14 262 0 701 234 20 50 chr15 47500870 47501071 -53879450 - MLT1J2 LTR MaLR -2 448 254 651 191 22 7 chr15 47501115 47501251 -53879270 - MER103 DNA DNA -9 157 20 1961 142 0 7 chr15 47501265 47501561 -53878960 + AluSx SINE Alu 1 294 -18 260 143 0 41 chr15 47501665 47501714 -53878807 - L2 LINE L2 -573 2741 2695 268 257 80 9 chr15 47501819 47501932 -53878589 - L1ME LINE L1 -225 5896 5776 584 212 58 0 chr15 47502235 47502372 -53878149 + L1MC4 LINE L1 7414 7558 -484 294 85 0 21 chr15 47502365 47502412 -53878109 + L1MC4 LINE L1 7996 8041 -1 * 5032 11 0 0 chr15 47503641 47504198 -53876323 + L1PA2 LINE L1 5599 6155 0 184 188 118 71 chr15 47504548 47504633 -53875888 - L3 LINE CR1 -144 1433 1345 229 330 62 0 chr15 47505352 47505449 -53875072 + MIR SINE MIR 99 201 -61 1728 215 92 10 chr15 47505535 47505949 -53874572 - MER39 LTR ERV1 0 707 260 352 228 30 40 chr15 47505923 47506024 -53874497 - LTR48B LTR ERV1 -544 100 1 * 436 282 72 28 chr15 47506057 47506238 -53874283 - MER5A DNA MER1_type 0 189 1 500 246 78 24 chr15 47506243 47506410 -53874111 - MIR3 SINE MIR 0 208 33 400 284 47 62 chr15 47506757 47506968 -53873553 - L1ME3A LINE L1 -1 6169 5962 2164 233 72 65 chr15 47507060 47507959 -53872562 - L1MC5 LINE L1 -431 7530 6625 264 30 0 0 chr15 47507963 47507996 -53872525 + (CA)n Simple_repeat Simple_repeat 1 33 0 241 151 19 0 chr15 47508063 47508116 -53872405 - L1MD3 LINE L1 -2 7993 7940 325 326 16 64 chr15 47508263 47508450 -53872071 - HAL1b LINE L1 -1158 190 13 24 0 0 0 chr15 47508467 47508491 -53872030 + AT_rich Low_complexity Low_complexity 1 24 0 3104 86 17 0 chr15 47508528 47508947 -53871574 - L1PA10 LINE L1 0 6168 5743 263 212 61 8 chr15 47508947 47509079 -53871442 + (TA)n Simple_repeat Simple_repeat 2 140 0 802 170 14 0 chr15 47509121 47509268 -53871253 - FRAM SINE Alu -15 161 13 546 229 0 76 chr15 47510429 47510495 -53870026 - MIR SINE MIR 0 262 193 198 0 0 0 chr15 47510495 47510517 -53870004 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1953 121 11 4 chr15 47510519 47510799 -53869722 - AluSx SINE Alu -30 282 1 546 229 0 76 chr15 47510799 47510886 -53869635 - MIR SINE MIR -70 192 118 791 258 176 34 chr15 47511125 47511482 -53869039 + MLT1J LTR MaLR 100 507 -4 445 309 102 71 chr15 47511548 47512217 -53868304 - L2 LINE L2 -257 3056 2311 1971 223 31 4 chr15 47512217 47512671 -53867850 - MLT1C LTR MaLR -1 466 1 445 309 102 71 chr15 47512671 47512775 -53867746 - L2 LINE L2 -1002 2311 2212 672 181 58 7 chr15 47513530 47513685 -53866836 - L1MB7 LINE L1 0 6184 6022 416 259 42 62 chr15 47513694 47513887 -53866634 + MIR SINE MIR 58 246 -16 224 182 36 0 chr15 47514021 47514076 -53866445 + (CA)n Simple_repeat Simple_repeat 2 58 0 300 296 17 17 chr15 47514478 47514593 -53865928 - MIR SINE MIR -100 162 48 316 329 14 21 chr15 47514736 47514879 -53865642 + MER5B DNA MER1_type 1 142 -36 1012 265 102 17 chr15 47515029 47515441 -53865080 - MLT1J2 LTR MaLR 0 450 4 765 303 70 24 chr15 47515456 47516041 -53864480 + L1ME4a LINE L1 5279 5905 -216 192 40 0 0 chr15 47516101 47516126 -53864395 + (CAT)n Simple_repeat Simple_repeat 3 27 0 603 40 0 0 chr15 47516326 47516400 -53864121 + (TA)n Simple_repeat Simple_repeat 1 74 0 182 200 0 0 chr15 47516401 47516441 -53864080 + MIR SINE MIR 82 121 -87 330 200 61 128 chr15 47516486 47516666 -53863855 + L1ME4a LINE L1 5927 6094 -27 302 225 0 0 chr15 47517036 47517107 -53863414 + MIR SINE MIR 50 120 -142 1656 191 26 59 chr15 47517417 47517804 -53862717 + MLT1A2 LTR MaLR 1 374 0 653 245 27 21 chr15 47518061 47518249 -53862272 + Charlie8 DNA MER1_type 97 285 -2132 581 247 22 28 chr15 47518474 47518652 -53861869 - MIR3 SINE MIR -17 191 15 438 301 66 18 chr15 47519268 47519434 -53861087 + MIR SINE MIR 12 185 -77 1911 161 133 26 chr15 47519492 47519913 -53860608 + MER31B LTR ERV1 1 466 0 807 166 18 71 chr15 47520825 47520994 -53859527 + LTR16C LTR ERVL 310 469 -22 239 329 79 0 chr15 47521559 47521699 -53858822 - MIR SINE MIR -72 190 40 507 152 0 0 chr15 47521713 47521792 -53858729 - AluJ/FLAM SINE Alu -232 80 2 252 286 0 0 chr15 47522727 47522790 -53857731 + L2 LINE L2 3208 3270 -2 205 264 0 0 chr15 47523506 47523559 -53856962 - MIR3 SINE MIR -15 193 141 230 235 143 0 chr15 47523559 47523610 -53856911 - L1M4 LINE L1 -3264 2882 2840 432 116 0 35 chr15 47523610 47523696 -53856825 - L1MB8 LINE L1 0 6178 6096 230 235 143 0 chr15 47523696 47523742 -53856779 - L1M4 LINE L1 -3306 2840 2771 * 4410 150 18 23 chr15 47523713 47524507 -53856014 - L1MB4 LINE L1 -6 6174 5385 6255 70 8 11 chr15 47524548 47525353 -53855168 - L1PA10 LINE L1 0 6168 5367 4598 116 17 16 chr15 47525359 47526065 -53854456 + L1P LINE L1 4491 5197 -949 9636 136 10 20 chr15 47526068 47527697 -53852824 - L1P LINE L1 -2540 3606 1994 513 144 0 11 chr15 47527674 47527764 -53852757 - L1MB4 LINE L1 -775 5403 5315 * 1083 108 40 6 chr15 47527770 47527946 -53852575 - L1MA8 LINE L1 -4 6287 6106 864 133 0 0 chr15 47527949 47528069 -53852452 + AluJb SINE Alu 178 297 -15 435 85 0 0 chr15 47528070 47528129 -53852392 - L1MA8 LINE L1 -182 6109 6051 1793 249 65 26 chr15 47528134 47528922 -53851599 - L1MEc LINE L1 -3311 2904 2134 21 0 0 0 chr15 47528925 47528946 -53851575 + AT_rich Low_complexity Low_complexity 1 21 0 1133 175 47 5 chr15 47528947 47529158 -53851363 - L1MB5 LINE L1 -9 6165 5946 2260 108 0 10 chr15 47529643 47529949 -53850572 - AluSx SINE Alu -5 307 5 412 319 15 7 chr15 47529976 47530111 -53850410 - MIR3 SINE MIR -52 156 21 211 309 0 0 chr15 47530170 47530225 -53850296 - L2 LINE L2 0 3272 3218 617 238 33 41 chr15 47530243 47530487 -53850034 - L1MEc LINE L1 -4920 1476 1235 367 246 46 15 chr15 47530538 47530668 -53849853 - MLT1J LTR MaLR 0 511 378 406 299 28 35 chr15 47530739 47530883 -53849638 - MLT1J LTR MaLR -260 251 109 1116 212 0 5 chr15 47530889 47531101 -53849420 - AluJo SINE Alu -17 295 85 2404 48 38 3 chr15 47531113 47531403 -53849118 - AluY SINE Alu -11 300 1 465 272 0 9 chr15 47531403 47531517 -53849004 - MLT1J LTR MaLR -398 113 1 207 412 17 0 chr15 47531569 47531688 -53848833 - L2 LINE L2 -215 3057 2937 1876 164 3 7 chr15 47532392 47532696 -53847825 - AluJb SINE Alu -6 306 4 360 212 93 8 chr15 47532709 47532827 -53847694 - L1ME4a LINE L1 -6 6115 5988 611 274 17 0 chr15 47532878 47533053 -53847468 - MIR SINE MIR -3 259 82 800 208 81 60 chr15 47533086 47533456 -53847065 - L1MC5 LINE L1 -25 7936 7559 280 275 186 21 chr15 47533869 47534062 -53846459 - L2 LINE L2 -3 3310 3086 891 309 72 33 chr15 47535186 47535548 -53844973 - L1MC4a LINE L1 -1902 5906 5508 5705 111 40 8 chr15 47535548 47537007 -53843514 + L1PA16 LINE L1 4678 6166 0 891 309 72 33 chr15 47537007 47537272 -53843249 - L1MC4a LINE L1 -2300 5508 5255 1377 245 81 7 chr15 47537874 47538306 -53842215 - MER113 DNA MER1_type? -19 502 39 645 159 0 0 chr15 47538525 47538632 -53841889 - FRAM SINE Alu 0 176 70 1606 239 37 26 chr15 47539072 47539153 -53841368 + L1ME3A LINE L1 5700 5779 -391 2168 181 62 2 chr15 47539153 47539557 -53840964 - MSTA LTR MaLR 0 428 1 1606 239 37 26 chr15 47539557 47539936 -53840585 + L1ME3A LINE L1 5779 6165 -5 1561 204 22 20 chr15 47542012 47542333 -53838188 + MLT1A2 LTR MaLR 21 534 -33 446 278 92 9 chr15 47542435 47542662 -53837859 - MIR SINE MIR -14 248 3 270 172 69 0 chr15 47543670 47543728 -53836793 - MIR SINE MIR -88 174 113 304 210 25 0 chr15 47543950 47544031 -53836490 + MIR3 SINE MIR 107 189 -19 301 258 43 32 chr15 47544515 47544608 -53835913 + MIR3 SINE MIR 70 163 -45 1018 203 6 0 chr15 47544662 47544839 -53835682 + MER45A DNA AcHobo 1 178 0 512 285 44 18 chr15 47546216 47546502 -53834019 - LTR16A LTR ERVL -14 436 114 287 309 0 86 chr15 47546928 47547090 -53833431 + L2 LINE L2 2907 3054 -218 345 325 40 0 chr15 47548746 47548872 -53831649 + MIR SINE MIR 62 192 -70 311 220 0 0 chr15 47549434 47549493 -53831028 - AluS SINE Alu -244 59 1 2139 131 0 3 chr15 47550121 47550419 -53830102 - AluSq SINE Alu -16 297 1 289 260 10 62 chr15 47550623 47550719 -53829802 + L1ME LINE L1 4487 4577 -1569 496 319 110 42 chr15 47550745 47551335 -53829186 + L1ME LINE L1 4642 5271 -875 403 206 75 34 chr15 47551394 47551540 -53828981 + L1ME LINE L1 5319 5470 -2338 656 214 0 7 chr15 47551703 47551843 -53828678 + L1MC4a LINE L1 7141 7279 -529 919 214 116 10 chr15 47551880 47552121 -53828400 + MLT1G LTR MaLR 343 590 0 791 140 30 35 chr15 47552121 47552310 -53828211 - L1MC4 LINE L1 -685 7357 7125 2101 128 0 19 chr15 47552310 47552622 -53827899 - AluSx SINE Alu -6 306 1 2922 262 112 42 chr15 47552629 47554177 -53826344 - L1MD3 LINE L1 -948 7047 5391 419 213 107 40 chr15 47554677 47554827 -53825694 - MIR SINE MIR -69 193 34 407 215 243 23 chr15 47557582 47557759 -53822762 + L1ME LINE L1 5550 5765 -356 1625 82 4 35 chr15 47557846 47558078 -53822443 + AluY SINE Alu 84 308 -3 604 246 14 0 chr15 47558142 47558280 -53822241 - MER46C DNA MER2_type -114 224 85 639 35 0 0 chr15 47558595 47558693 -53821828 + L1PA2 LINE L1 10 380 -6081 * 38243 35 25 2 chr15 47558660 47564104 -53816417 + L1PA2 LINE L1 893 6468 -2 24 0 0 0 chr15 47564104 47564128 -53816393 + AT_rich Low_complexity Low_complexity 1 24 0 238 291 23 0 chr15 47564450 47564536 -53815985 + LTR37B LTR ERV1 111 198 -270 1020 233 15 22 chr15 47564584 47564855 -53815666 + LTR37B LTR ERV1 200 468 0 269 241 0 0 chr15 47565129 47565187 -53815334 - L2 LINE L2 0 3313 3256 2178 212 33 26 chr15 47565514 47565972 -53814549 - MLT1F LTR MaLR -79 463 3 848 241 133 60 chr15 47565981 47566395 -53814126 - MLT1J LTR MaLR -46 465 22 373 206 272 7 chr15 47566633 47566769 -53813752 - MIR SINE MIR -71 191 20 435 236 161 12 chr15 47568290 47568451 -53812070 - MIR SINE MIR 0 262 78 1411 278 62 24 chr15 47569827 47570294 -53810227 - LTR16C LTR ERVL 0 491 7 495 201 67 22 chr15 47570701 47570835 -53809686 - MLT1L LTR MaLR 0 615 476 1179 201 138 56 chr15 47570959 47571303 -53809218 + MLT1G LTR MaLR 178 590 0 1393 276 81 16 chr15 47571612 47572323 -53808198 + L2 LINE L2 2539 3311 -2 1902 139 48 0 chr15 47572701 47573027 -53807494 + AluJo SINE Alu 4 343 0 288 282 26 77 chr15 47573323 47573479 -53807042 - MIR SINE MIR -45 217 70 187 154 0 51 chr15 47573689 47573728 -53806793 + MIR SINE MIR 46 82 -180 708 214 29 29 chr15 47574336 47574546 -53805975 - LTR37A LTR ERV1 0 426 217 437 214 159 8 chr15 47574573 47574699 -53805822 - L1ME3A LINE L1 -297 5873 5729 252 0 0 0 chr15 47575474 47575502 -53805019 + (T)n Simple_repeat Simple_repeat 1 28 0 228 231 0 0 chr15 47575957 47576009 -53804512 + L2 LINE L2 3262 3313 0 341 272 231 0 chr15 47576037 47576206 -53804315 - MIR SINE MIR -8 254 47 226 232 61 12 chr15 47576805 47576887 -53803634 + MIR3 SINE MIR 109 194 -14 322 200 74 0 chr15 47577567 47577662 -53802859 - MER5C DNA MER1_type -18 306 205 1983 146 3 13 chr15 47577687 47578165 -53802356 - AluSx SINE Alu 0 475 1 369 259 62 0 chr15 47578220 47578332 -53802189 - MER5C DNA MER1_type -200 124 6 314 244 184 95 chr15 47578989 47579157 -53801364 - MARNA DNA Mariner -4 582 400 1085 198 14 9 chr15 47581337 47581554 -53798967 + AluJo SINE Alu 79 296 -16 3453 152 109 8 chr15 47581565 47582235 -53798286 + L1MB3 LINE L1 5444 6181 -2 236 306 51 20 chr15 47582762 47582860 -53797661 + MIR3 SINE MIR 13 113 -95 360 304 40 0 chr15 47583276 47583401 -53797120 + L2 LINE L2 2639 2768 -546 850 230 14 48 chr15 47583413 47583622 -53796899 + MER63A DNA MER1_type 1 202 -8 620 295 159 6 chr15 47583773 47584132 -53796389 + L2 LINE L2 2900 3313 0 329 213 13 13 chr15 47584557 47584632 -53795889 - MIR SINE MIR -122 140 66 2236 91 31 0 chr15 47584901 47585187 -53795334 - AluSq SINE Alu -18 295 1 198 0 0 0 chr15 47585218 47585240 -53795281 + (A)n Simple_repeat Simple_repeat 1 22 0 338 280 173 7 chr15 47585599 47585749 -53794772 - MER5A DNA MER1_type 0 189 15 374 202 43 0 chr15 47585776 47585870 -53794651 + MER5A DNA MER1_type 9 106 -83 324 247 31 31 chr15 47585962 47586059 -53794462 + MLT1C LTR MaLR 1 97 -408 1211 196 29 82 chr15 47586160 47586537 -53793984 + MLT1C LTR MaLR 111 467 0 236 163 0 0 chr15 47587603 47587646 -53792875 - L2 LINE L2 -6 3266 3224 182 267 83 0 chr15 47588075 47588135 -53792386 + MIR SINE MIR 134 198 -64 336 223 36 62 chr15 47589226 47589338 -53791183 + MER102b DNA MER1_type 232 340 -1 297 68 0 0 chr15 47589581 47589625 -53790896 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 719 195 0 0 chr15 47589625 47589743 -53790778 - FRAM SINE Alu -27 149 32 189 167 62 0 chr15 47589872 47589920 -53790601 + MIR SINE MIR 141 191 -71 214 284 62 57 chr15 47590749 47590925 -53789596 + MIR SINE MIR 22 198 -64 504 282 46 11 chr15 47591033 47591207 -53789314 - MIR SINE MIR -19 243 64 191 279 0 0 chr15 47591223 47591266 -53789255 - MIR3 SINE MIR -11 197 155 260 122 0 0 chr15 47595223 47595264 -53785257 + L2 LINE L2 3263 3303 -10 518 286 101 29 chr15 47596368 47596667 -53783854 + Charlie8 DNA MER1_type 9 1427 -990 347 263 17 34 chr15 47597487 47597605 -53782916 + L2 LINE L2 3137 3252 -20 2258 112 0 13 chr15 47599925 47600230 -53780291 - AluSx SINE Alu -11 301 1 185 265 235 15 chr15 47600419 47600551 -53779970 + MIR3 SINE MIR 2 162 -46 234 309 31 0 chr15 47601367 47601464 -53779057 - MIR SINE MIR -6 256 157 246 335 67 30 chr15 47602896 47603060 -53777461 - MIR SINE MIR -27 235 66 1061 259 26 47 chr15 47603610 47603993 -53776528 + L2 LINE L2 2939 3313 0 1555 188 15 3 chr15 47604091 47604421 -53776100 - L1MA4 LINE L1 -5 6295 5962 245 106 0 43 chr15 47605474 47605521 -53775000 + (TATG)n Simple_repeat Simple_repeat 2 46 0 21 71 0 0 chr15 47606283 47606325 -53774196 + AT_rich Low_complexity Low_complexity 1 42 0 197 309 55 0 chr15 47606666 47606721 -53773800 + L2 LINE L2 3122 3179 -93 243 0 0 0 chr15 47606791 47606818 -53773703 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 315 49 0 0 chr15 47607086 47607127 -53773394 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 387 0 0 0 chr15 47607126 47607169 -53773352 + (CA)n Simple_repeat Simple_repeat 1 43 0 387 339 57 13 chr15 47608139 47608369 -53772152 + L2 LINE L2 2606 2845 -469 217 316 132 0 chr15 47608678 47608754 -53771767 + L2 LINE L2 3133 3218 -54 582 237 28 28 chr15 47608926 47609103 -53771418 - MIR SINE MIR -46 216 40 1944 179 44 71 chr15 47609184 47609353 -53771168 + MLT1D LTR MaLR 2 174 -331 2429 81 0 0 chr15 47609353 47609649 -53770872 + AluY SINE Alu 14 309 -2 1944 179 44 71 chr15 47609649 47609997 -53770524 + MLT1D LTR MaLR 174 505 0 289 297 65 14 chr15 47610357 47610495 -53770026 + MIR3 SINE MIR 59 203 -5 337 247 186 10 chr15 47610712 47610880 -53769641 + MIR SINE MIR 51 259 -3 1554 173 0 22 chr15 47610927 47611235 -53769286 + AluJb SINE Alu 11 312 0 25 31 0 0 chr15 47612748 47612780 -53767741 + AT_rich Low_complexity Low_complexity 1 32 0 1101 152 0 0 chr15 47612780 47612938 -53767583 + AluJb SINE Alu 141 298 -14 207 0 0 0 chr15 47613092 47613115 -53767406 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2224 121 0 10 chr15 47614147 47614454 -53766067 - AluSx SINE Alu -8 304 1 352 141 113 0 chr15 47614495 47614566 -53765955 + L2 LINE L2 951 1029 -2285 508 272 66 3 chr15 47614568 47614892 -53765629 + L1MC4 LINE L1 7281 7575 -467 4209 231 186 41 chr15 47614973 47616768 -53763753 + L2 LINE L2 1022 3168 -145 687 170 9 0 chr15 47616768 47616880 -53763641 - MER81 DNA DNA -1 113 1 4209 231 186 41 chr15 47616880 47617045 -53763476 + L2 LINE L2 3168 3308 -5 191 236 0 73 chr15 47617079 47617134 -53763387 + L2 LINE L2 3221 3271 -1 672 225 24 6 chr15 47618277 47618432 -53762089 - MER5B DNA MER1_type -26 163 3 1068 162 22 0 chr15 47618790 47618975 -53761546 - MER5A DNA MER1_type 0 189 1 324 213 0 0 chr15 47619903 47619964 -53760557 - AluJ/monomer SINE Alu -3 299 239 207 0 0 0 chr15 47620685 47620708 -53759813 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 243 227 0 0 chr15 47621928 47621972 -53758549 + L2 LINE L2 3266 3309 -4 1131 104 0 0 chr15 47622031 47622185 -53758336 - AluSg/x SINE Alu -22 290 137 895 279 20 24 chr15 47622838 47623132 -53757389 + L1ME3A LINE L1 5664 5956 -214 196 320 247 0 chr15 47623825 47623922 -53756599 + MIR SINE MIR 46 166 -96 220 306 42 28 chr15 47624338 47624410 -53756111 + MIR3 SINE MIR 95 167 -41 348 203 0 0 chr15 47624433 47624497 -53756024 + MIR3 SINE MIR 93 156 -52 253 185 0 141 chr15 47624504 47624596 -53755925 + MER5B DNA MER1_type 3 81 -97 335 285 60 53 chr15 47624794 47624945 -53755576 + MER5A DNA MER1_type 34 185 -4 21 0 0 0 chr15 47627038 47627059 -53753462 + AT_rich Low_complexity Low_complexity 1 21 0 2824 143 32 23 chr15 47627258 47627783 -53752738 + Tigger6 DNA MER2_type 1068 1597 0 957 34 8 0 chr15 47627913 47628031 -53752490 - L1PA2 LINE L1 0 6155 6037 1971 12 17 0 chr15 47628031 47628271 -53752250 + L1P LINE L1 5079 5322 -824 1075 258 29 0 chr15 47628281 47628525 -53751996 - MIR SINE MIR -10 252 2 196 194 0 0 chr15 47628636 47628672 -53751849 - MIR3 SINE MIR -16 192 157 331 235 113 35 chr15 47630577 47630692 -53749829 + L2 LINE L2 3137 3260 -12 2095 104 0 29 chr15 47630906 47631213 -53749308 - AluSx SINE Alu -14 298 1 221 339 32 57 chr15 47631679 47631803 -53748718 - MIR3 SINE MIR -2 206 86 180 326 43 22 chr15 47632233 47632325 -53748196 + L2 LINE L2 3171 3264 -8 335 275 51 51 chr15 47633425 47633563 -53746958 + L2 LINE L2 3134 3271 -1 318 250 114 11 chr15 47633855 47633943 -53746578 + MIR3 SINE MIR 100 196 -12 406 290 48 14 chr15 47635099 47635244 -53745277 + MIR SINE MIR 112 261 -1 349 264 88 31 chr15 47636234 47636393 -53744128 + MARNA DNA Mariner 210 377 -209 305 255 60 65 chr15 47636473 47636747 -53743774 - L1MEd LINE L1 -1242 1265 984 317 223 18 62 chr15 47637029 47637141 -53743380 - L2 LINE L2 -249 3023 2917 452 337 39 24 chr15 47638558 47638763 -53741758 + MIR SINE MIR 55 262 0 549 194 28 0 chr15 47638917 47639025 -53741496 - MER94 DNA DNA -20 114 4 351 197 102 47 chr15 47639152 47639279 -53741242 - MIR SINE MIR -55 207 74 639 259 161 5 chr15 47639898 47640091 -53740430 - MIR SINE MIR 0 262 40 205 357 0 20 chr15 47640965 47641063 -53739458 + MIR SINE MIR 58 153 -109 457 301 57 46 chr15 47643107 47643389 -53737132 + MER102a DNA MER1_type 36 320 -10 366 247 54 21 chr15 47643782 47643875 -53736646 - MIR SINE MIR -83 125 30 733 223 147 5 chr15 47644787 47644984 -53735537 - MER45C DNA AcHobo -4 949 725 840 202 122 53 chr15 47645053 47645315 -53735206 - MER45C DNA AcHobo -673 280 1 374 259 14 29 chr15 47645595 47645612 -53734909 - L1MA10 LINE L1 -4 6330 6314 2441 208 105 45 chr15 47645612 47647003 -53733518 - L1ME1 LINE L1 -12 6154 4681 1323 283 60 8 chr15 47647075 47647475 -53733046 + LTR16B LTR ERVL 44 464 0 973 229 96 42 chr15 47647480 47647833 -53732688 - L1ME1 LINE L1 -1517 4629 4258 306 319 97 7 chr15 47648119 47648263 -53732258 - MIR SINE MIR -86 176 20 306 365 39 0 chr15 47649817 47649921 -53730600 + L2 LINE L2 3145 3252 -20 340 227 82 18 chr15 47649976 47650086 -53730435 + MIR SINE MIR 117 233 -29 1948 113 32 3 chr15 47650462 47650744 -53729777 - AluSg SINE Alu -20 290 1 199 258 11 90 chr15 47650911 47651000 -53729521 + MIR SINE MIR 72 153 -109 374 248 159 15 chr15 47651034 47651185 -53729336 + MIR3 SINE MIR 5 179 -29 1924 125 4 4 chr15 47651219 47651499 -53729022 + AluSq SINE Alu 1 280 -33 216 0 0 0 chr15 47651499 47651523 -53728998 + (CA)n Simple_repeat Simple_repeat 1 24 0 184 338 95 0 chr15 47652098 47652172 -53728349 + MIR SINE MIR 38 118 -90 404 317 106 22 chr15 47652962 47653142 -53727379 + MIR SINE MIR 20 214 -48 310 123 46 0 chr15 47654513 47654578 -53725943 + GA-rich Low_complexity Low_complexity 2 69 0 198 0 0 0 chr15 47655450 47655472 -53725049 + (T)n Simple_repeat Simple_repeat 1 22 0 2022 57 92 11 chr15 47657610 47657893 -53722628 - AluY SINE Alu -5 306 1 2580 74 9 236 chr15 47659739 47660184 -53720337 + LTR14B LTR ERVK 1 608 0 6201 65 10 0 chr15 47660184 47660957 -53719564 + HERVK14 LTR ERVK 1 781 -5164 9029 77 11 0 chr15 47660982 47662115 -53718406 + HERVK14 LTR ERVK 1384 2528 -3417 3445 80 20 3 chr15 47662099 47662611 -53717910 + HERVK14 LTR ERVK 4847 5429 -1814 * 1350 48 116 21 chr15 47662599 47662788 -53717733 + HERVK14 LTR ERVK 5558 5764 -181 * 374 157 0 20 chr15 47662788 47662858 -53717663 + MER41C LTR ERV1 6 61 -493 750 42 0 93 chr15 47662858 47662976 -53717545 + HERVK14 LTR ERVK 5835 5941 -4 2420 82 25 238 chr15 47662983 47663420 -53717101 + LTR14B LTR ERVK 1 608 0 229 346 94 24 chr15 47665544 47665671 -53714850 + L2 LINE L2 3136 3271 -1 348 137 0 0 chr15 47667660 47667711 -53712810 + MIR SINE MIR 210 260 -2 222 220 85 0 chr15 47669014 47669073 -53711448 - MIR SINE MIR -170 92 29 192 40 0 0 chr15 47669508 47669533 -53710988 + (CAGT)n Simple_repeat Simple_repeat 3 27 0 188 280 19 75 chr15 47669533 47669640 -53710881 - L2 LINE L2 -1488 1826 1726 274 272 228 0 chr15 47670142 47670256 -53710265 + MER91A DNA MER1_type 57 196 0 1345 84 6 0 chr15 47670582 47670760 -53709761 + L1PB1 LINE L1 5967 6145 -6 5501 80 20 33 chr15 47671030 47672494 -53708027 + SVA Other Other 7 1046 -340 28 0 0 0 chr15 47672632 47672660 -53707861 + AT_rich Low_complexity Low_complexity 1 28 0 335 280 45 53 chr15 47672951 47673083 -53707438 + L2 LINE L2 3134 3264 -8 275 278 225 7 chr15 47674631 47674782 -53705739 - MIR3 SINE MIR -6 202 19 468 0 0 0 chr15 47675313 47675365 -53705156 + (CA)n Simple_repeat Simple_repeat 2 53 0 302 246 117 95 chr15 47675931 47676110 -53704411 + MIR3 SINE MIR 17 199 -9 402 268 38 81 chr15 47677255 47677464 -53703057 - L2 LINE L2 -110 3162 2963 403 340 85 10 chr15 47680198 47680398 -53700123 + L2 LINE L2 2994 3208 -64 250 241 89 0 chr15 47682009 47682088 -53698433 + L1ME4a LINE L1 5996 6081 -40 22 0 0 0 chr15 47682269 47682291 -53698230 + AT_rich Low_complexity Low_complexity 1 22 0 2389 84 0 0 chr15 47682385 47682694 -53697827 - AluSq SINE Alu -4 309 1 355 135 233 135 chr15 47682987 47683055 -53697466 + MLT1E2 LTR MaLR 481 541 -85 2113 119 0 0 chr15 47683055 47683349 -53697172 - AluSx SINE Alu -12 300 7 355 135 233 135 chr15 47683349 47683413 -53697108 + MLT1E2 LTR MaLR 541 626 0 181 143 0 0 chr15 47684594 47684622 -53695899 - L2 LINE L2 -552 2762 2735 207 306 0 0 chr15 47685391 47685440 -53695081 - MIR SINE MIR -2 260 212 181 214 125 0 chr15 47685441 47685497 -53695024 + MIR SINE MIR 186 248 -14 335 265 129 26 chr15 47686168 47686332 -53694189 + MIR3 SINE MIR 1 177 -73 1570 203 60 14 chr15 47686541 47686890 -53693631 + MLT1A1 LTR MaLR 1 365 0 281 350 137 0 chr15 47687415 47687532 -53692989 + L2 LINE L2 3134 3266 -6 327 305 63 63 chr15 47687713 47688044 -53692477 + L1MDa LINE L1 19 349 -6191 673 229 41 88 chr15 47688376 47688731 -53691790 + L1MDa LINE L1 794 1156 -5374 429 260 68 45 chr15 47688929 47689106 -53691415 + MIR3 SINE MIR 25 205 -3 2236 101 0 0 chr15 47690705 47691002 -53689519 + AluSx SINE Alu 1 297 -15 360 302 133 7 chr15 47691152 47691295 -53689226 + MIR SINE MIR 13 173 -35 230 300 43 0 chr15 47691268 47691338 -53689183 - MIR SINE MIR -149 113 41 * 447 323 131 17 chr15 47692043 47692455 -53688066 + L2 LINE L2 2469 2927 -387 386 202 0 175 chr15 47692645 47692828 -53687693 + L2 LINE L2 3163 3313 0 482 289 53 59 chr15 47693199 47693386 -53687135 + MIR3 SINE MIR 20 205 -3 891 138 7 0 chr15 47693398 47693536 -53686985 + FLAM_C SINE Alu 1 139 -4 826 144 0 8 chr15 47693787 47693919 -53686602 + FLAM_C SINE Alu 1 131 -2 1296 253 62 50 chr15 47693963 47694292 -53686229 + MLT1J LTR MaLR 99 435 -76 2191 85 7 26 chr15 47694292 47694598 -53685923 - AluY SINE Alu -10 301 2 1296 253 62 50 chr15 47694598 47694672 -53685849 + MLT1J LTR MaLR 435 507 -4 415 244 112 16 chr15 47694935 47695083 -53685438 - MIR3 SINE MIR -43 165 19 325 345 72 36 chr15 47695338 47695532 -53684989 - MIR SINE MIR -31 231 31 421 331 74 0 chr15 47696994 47697142 -53683379 + MIR SINE MIR 48 206 -56 260 283 163 0 chr15 47697174 47697266 -53683255 - MIR SINE MIR -34 228 122 1423 177 72 10 chr15 47697911 47698216 -53682305 - MER33 DNA MER1_type 0 324 1 22 35 0 0 chr15 47699140 47699169 -53681352 + AT_rich Low_complexity Low_complexity 1 29 0 185 260 40 0 chr15 47699925 47699975 -53680546 + MIR SINE MIR 72 123 -85 239 329 0 0 chr15 47700697 47700767 -53679754 + MIR SINE MIR 74 143 -119 501 162 71 20 chr15 47702280 47702379 -53678142 + FLAM_A SINE Alu 18 121 -21 2063 148 37 20 chr15 47702668 47702748 -53677773 - MER47A DNA MER2_type -1957 366 289 2392 81 0 0 chr15 47702748 47703055 -53677466 + AluSc SINE Alu 1 307 -2 2063 148 37 20 chr15 47703055 47703326 -53677195 - MER47A DNA MER2_type -2034 289 9 327 291 12 0 chr15 47703948 47704034 -53676487 - MER69A DNA AcHobo -85 92 6 287 322 35 43 chr15 47704102 47704217 -53676304 - MIR3 SINE MIR -87 121 8 189 178 0 0 chr15 47704627 47704672 -53675849 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 594 152 105 0 chr15 47704677 47704782 -53675739 - AluSc SINE Alu -5 304 189 240 204 0 0 chr15 47704886 47704930 -53675591 - MER20B DNA MER1_type -1 782 739 2230 229 52 62 chr15 47704973 47705720 -53674801 - MER20B DNA MER1_type -39 744 5 387 60 0 0 chr15 47705738 47705788 -53674733 + (TG)n Simple_repeat Simple_repeat 2 51 0 1617 206 104 43 chr15 47705848 47706338 -53674183 + MLT2B1 LTR ERVL 1 520 0 429 316 89 61 chr15 47706928 47707368 -53673153 - L2 LINE L2 -1 3271 2820 888 320 69 17 chr15 47707715 47708196 -53672325 - L2 LINE L2 -1019 2295 1790 401 225 45 157 chr15 47709089 47709356 -53671165 - L1MCa LINE L1 -4351 2075 1839 420 333 41 11 chr15 47709848 47710115 -53670406 - HAL1 LINE L1 -832 1675 1401 416 226 65 71 chr15 47711482 47711637 -53668884 + MIR SINE MIR 84 237 -25 993 221 106 39 chr15 47712013 47712325 -53668196 + LTR16A LTR ERVL 118 450 0 786 276 75 58 chr15 47712965 47713531 -53666990 + L2 LINE L2 2736 3313 0 22 0 0 0 chr15 47714100 47714122 -53666399 + AT_rich Low_complexity Low_complexity 1 22 0 354 297 297 0 chr15 47714558 47714750 -53665771 - MIR SINE MIR 0 262 14 1495 98 15 0 chr15 47715463 47715667 -53664854 - MER21A LTR ERV1 0 931 725 * 2595 183 64 21 chr15 47715666 47716181 -53664340 - MER21A LTR ERV1 -394 537 1 240 111 0 0 chr15 47716235 47716271 -53664250 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 359 260 20 30 chr15 47716459 47716559 -53663962 + L2 LINE L2 3173 3271 -1 180 320 120 24 chr15 47716545 47716670 -53663851 - L3 LINE CR1 -184 1393 1257 * 188 338 27 0 chr15 47716784 47716858 -53663663 - L3 LINE CR1 -405 1172 1097 2511 138 41 5 chr15 47717030 47717443 -53663078 - MSTA LTR MaLR 0 428 1 288 290 86 0 chr15 47718046 47718139 -53662382 - MIR3 SINE MIR -106 102 2 279 235 109 34 chr15 47719368 47719487 -53661034 + MIR3 SINE MIR 75 202 -6 256 311 41 87 chr15 47720970 47721166 -53659355 - MER5A DNA MER1_type -1 188 2 528 259 168 0 chr15 47721187 47721330 -53659191 - MER5A DNA MER1_type -14 175 9 532 244 50 0 chr15 47721336 47721455 -53659066 - MER5B DNA MER1_type -17 161 37 330 283 115 68 chr15 47722684 47723971 -53656550 + L1P LINE L1 3890 5237 -909 2107 117 3 0 chr15 47723974 47724281 -53656240 + AluSx SINE Alu 1 308 -4 253 217 103 98 chr15 47724311 47724514 -53656007 + L1MC4a LINE L1 5255 5458 -2350 1503 77 10 0 chr15 47724529 47724723 -53655798 - MER30 DNA MER1_type -33 197 2 1505 232 107 17 chr15 47724724 47725228 -53655293 + L1MC4a LINE L1 5451 6004 -287 255 214 43 29 chr15 47725218 47725288 -53655233 + L1MC4a LINE L1 6084 6154 -1654 * 201 94 0 0 chr15 47725475 47725507 -53655014 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 1493 182 26 29 chr15 47725511 47725824 -53654697 - AluJo SINE Alu 0 312 1 336 179 13 26 chr15 47725831 47725909 -53654612 - Charlie8 DNA MER1_type -2270 147 71 503 328 43 8 chr15 47726193 47726449 -53654072 + MARNA DNA Mariner 313 577 -9 1710 201 15 18 chr15 47726556 47726894 -53653627 + MER58B DNA MER1_type 3 339 -2 2178 90 0 13 chr15 47726933 47727233 -53653288 - AluY SINE Alu -15 296 1 793 138 0 0 chr15 47728381 47728497 -53652024 - FLAM_C SINE Alu -13 120 5 788 270 75 8 chr15 47728955 47729196 -53651325 + MIR SINE MIR 3 259 -3 1820 151 12 112 chr15 47729219 47729622 -53650899 - MLT1A1 LTR MaLR -2 363 1 2992 199 19 72 chr15 47729896 47730623 -53649898 + LTR8 LTR ERV1 1 689 -2 180 0 0 0 chr15 47730905 47730925 -53649596 + (A)n Simple_repeat Simple_repeat 1 20 0 189 0 0 0 chr15 47730985 47731006 -53649515 + (CCA)n Simple_repeat Simple_repeat 3 23 0 360 375 63 30 chr15 47731754 47732229 -53648292 - L2 LINE L2 -337 2977 2487 3020 128 21 6 chr15 47732234 47732701 -53647820 - MER41B LTR ERV1 0 635 162 2260 105 0 3 chr15 47732702 47733015 -53647506 - AluSx SINE Alu 0 312 1 657 98 0 107 chr15 47733602 47733624 -53646897 - MER41B LTR ERV1 -526 109 86 2103 104 0 3 chr15 47733624 47733922 -53646599 + AluSc SINE Alu 1 297 -12 657 98 0 107 chr15 47733922 47734021 -53646500 - MER41B LTR ERV1 -549 86 1 716 313 41 16 chr15 47734297 47734543 -53645978 + MIR SINE MIR 11 262 0 670 181 0 112 chr15 47734831 47735019 -53645502 + LTR12 LTR ERV1 286 452 -262 11640 223 23 31 chr15 47735064 47737393 -53643128 + LTR8-int LTR ERV1 1 2926 -5700 2334 78 0 10 chr15 47737393 47737701 -53642820 + AluY SINE Alu 1 305 -6 11640 223 23 31 chr15 47737701 47738507 -53642014 + LTR8-int LTR ERV1 2926 3737 -4889 784 239 5 25 chr15 47739274 47739471 -53641050 - L2 LINE L2 0 3313 3121 1036 156 0 11 chr15 47739471 47739650 -53640871 + AluSg/x SINE Alu 125 301 -9 1752 214 72 123 chr15 47739652 47739901 -53640620 - L2 LINE L2 -211 3102 2842 2123 122 0 0 chr15 47739901 47740212 -53640309 + AluSx SINE Alu 1 311 -1 1752 214 72 123 chr15 47740212 47740902 -53639619 - L2 LINE L2 -471 2842 2227 277 317 140 49 chr15 47741202 47741445 -53639076 - L2 LINE L2 -8 3264 3000 1167 262 88 25 chr15 47741513 47742067 -53638454 - L1MEc LINE L1 -4736 1660 1072 939 178 0 0 chr15 47742085 47742242 -53638279 - FRAM SINE Alu -19 157 1 1035 211 23 20 chr15 47742245 47742548 -53637973 - L1MEc LINE L1 -5325 1071 768 334 306 46 53 chr15 47742890 47743095 -53637426 - L1M LINE L1 -701 5420 5219 632 276 76 60 chr15 47743097 47743216 -53637305 - MIR SINE MIR 0 262 146 207 100 0 0 chr15 47743216 47743246 -53637275 + (TTA)n Simple_repeat Simple_repeat 2 31 0 632 276 76 60 chr15 47743246 47743376 -53637145 - MIR SINE MIR -116 146 9 317 333 15 56 chr15 47743391 47743586 -53636935 - L1M4 LINE L1 -941 5205 5019 1266 158 134 4 chr15 47744335 47744589 -53635932 + AluJb SINE Alu 7 293 -19 189 305 102 55 chr15 47744688 47744816 -53635705 - MIR SINE MIR -56 206 73 212 250 11 114 chr15 47745864 47745952 -53634569 - L2 LINE L2 -15 3298 3220 1670 170 70 28 chr15 47746291 47746691 -53633830 - MER95 LTR ERV -10 421 5 1696 186 0 0 chr15 47747540 47747835 -53632686 + AluJb SINE Alu 9 303 -9 239 282 39 39 chr15 47747851 47747929 -53632592 + MIR SINE MIR 57 134 -74 225 200 18 73 chr15 47747998 47748053 -53632468 - MIR3 SINE MIR -40 168 117 2045 136 0 10 chr15 47748409 47748719 -53631802 + AluSx SINE Alu 2 308 -4 2458 138 53 15 chr15 47749323 47749389 -53631132 - MSTC LTR MaLR 0 428 366 1999 126 0 7 chr15 47749389 47749683 -53630838 - AluSx SINE Alu -20 292 1 2458 138 53 15 chr15 47749683 47750028 -53630493 - MSTC LTR MaLR -62 366 1 1151 192 57 7 chr15 47750488 47750819 -53629702 - MSTD LTR MaLR -3 393 1 996 214 0 6 chr15 47750917 47751095 -53629426 + MER8 DNA MER2_type 1 177 -62 248 246 105 0 chr15 47751072 47751129 -53629392 + MER2 DNA MER2_type 282 344 -1 * 427 181 14 0 chr15 47751129 47751200 -53629321 - Tigger2 DNA MER2_type -2646 72 1 197 223 27 107 chr15 47751323 47751435 -53629086 - L2 LINE L2 -372 2942 2840 198 200 50 0 chr15 47751492 47751532 -53628989 + MIR3 SINE MIR 152 193 -15 512 300 9 23 chr15 47752146 47752311 -53628210 + MIR SINE MIR 10 143 -65 1584 195 33 3 chr15 47752425 47752727 -53627794 - AluJb SINE Alu -1 311 1 217 366 0 0 chr15 47753482 47753553 -53626968 - MIR SINE MIR -121 141 71 6487 123 62 50 chr15 47753794 47755010 -53625511 - Tigger3b DNA MER2_type 0 1231 1 1072 170 174 30 chr15 47757478 47757713 -53622808 - MER45C DNA AcHobo -8 945 677 805 240 103 10 chr15 47757832 47758036 -53622485 - MER45C DNA AcHobo -730 223 1 400 276 35 41 chr15 47758616 47758761 -53621760 + MER5A DNA MER1_type 19 162 -27 1971 70 0 33 chr15 47760182 47760453 -53620068 + AluY SINE Alu 49 310 -1 21 0 0 0 chr15 47761429 47761450 -53619071 + AT_rich Low_complexity Low_complexity 1 21 0 1095 272 105 29 chr15 47763115 47763726 -53616795 - L2 LINE L2 -18 3295 2640 550 319 119 45 chr15 47764202 47764916 -53615605 - L2 LINE L2 -519 2795 2029 189 236 283 19 chr15 47764919 47765025 -53615496 - L2 LINE L2 -3 3310 3177 223 296 22 82 chr15 47765322 47765457 -53615064 - L2 LINE L2 -235 3037 2911 312 274 60 34 chr15 47765534 47765651 -53614870 - MIR SINE MIR -21 241 122 225 226 38 0 chr15 47765649 47765702 -53614819 + L2 LINE L2 2889 2943 -371 * 210 321 110 0 chr15 47765754 47765863 -53614658 + L2 LINE L2 2946 3066 -247 365 222 111 40 chr15 47766211 47766337 -53614184 + L2 LINE L2 3138 3272 0 366 258 11 11 chr15 47766338 47766427 -53614094 - MIR SINE MIR -160 102 14 323 316 29 43 chr15 47766759 47766898 -53613623 + MIR3 SINE MIR 51 187 -21 201 231 144 48 chr15 47766901 47767005 -53613516 + L2 LINE L2 3186 3299 -14 260 65 43 0 chr15 47767005 47767051 -53613470 + (TGAA)n Simple_repeat Simple_repeat 4 51 0 1175 206 62 8 chr15 47767729 47767972 -53612549 + MIR SINE MIR 7 262 0 191 349 0 35 chr15 47768022 47768108 -53612413 - L2 LINE L2 -994 2320 2238 3311 104 123 8 chr15 47769889 47770361 -53610160 + MER1A DNA MER1_type 2 527 0 2060 201 37 9 chr15 47770511 47770943 -53609578 - L1M4 LINE L1 -1875 4271 3828 1148 307 56 18 chr15 47770964 47771466 -53609055 - L1MEc LINE L1 -5676 720 200 255 233 23 75 chr15 47771728 47771861 -53608660 + MIR SINE MIR 80 205 -57 2165 103 0 0 chr15 47772029 47772340 -53608181 + AluSx SINE Alu 1 311 0 839 162 13 7 chr15 47773118 47773272 -53607249 - LTR32 LTR ERVL 0 471 317 1541 194 59 19 chr15 47773328 47773401 -53607120 - LTR32 LTR ERVL -120 351 282 2634 129 58 31 chr15 47773401 47773818 -53606703 - MSTA LTR MaLR 0 428 1 1541 194 59 19 chr15 47773818 47774068 -53606453 - LTR32 LTR ERVL -189 282 15 235 173 96 19 chr15 47774444 47774496 -53606025 - L2 LINE L2 0 3313 3258 539 218 17 17 chr15 47774987 47775166 -53605355 + CT-rich Low_complexity Low_complexity 2 180 0 663 272 77 5 chr15 47775723 47775918 -53604603 - MIR SINE MIR -35 227 19 252 242 0 32 chr15 47776931 47776993 -53603528 - MIR3 SINE MIR -25 183 124 203 207 256 0 chr15 47779515 47779597 -53600924 + L2 LINE L2 3170 3272 0 413 275 84 24 chr15 47780104 47780271 -53600250 + MIR3 SINE MIR 21 197 -11 353 291 135 14 chr15 47781473 47781621 -53598900 + MIR3 SINE MIR 32 197 -11 419 265 43 8 chr15 47781800 47781917 -53598604 + MER5A DNA MER1_type 9 129 -60 262 289 141 15 chr15 47782592 47782727 -53597794 + MIR3 SINE MIR 12 163 -45 189 0 0 0 chr15 47783076 47783097 -53597424 + (T)n Simple_repeat Simple_repeat 1 21 0 769 131 54 31 chr15 47783113 47783243 -53597278 - FLAM_C SINE Alu 0 133 1 937 233 5 20 chr15 47783487 47783689 -53596832 + MER58A DNA MER1_type 26 224 0 602 222 77 0 chr15 47784225 47784342 -53596179 + FLAM_A SINE Alu 2 127 -6 183 80 0 0 chr15 47784847 47784872 -53595649 + (T)n Simple_repeat Simple_repeat 1 25 0 249 247 52 72 chr15 47786041 47786138 -53594383 + MIR SINE MIR 82 176 -86 3920 50 15 0 chr15 47786237 47786698 -53593823 - L1PA5 LINE L1 0 6154 5687 1431 150 4 11 chr15 47787677 47787944 -53592577 - L1PA5 LINE L1 -174 5980 5716 242 305 79 43 chr15 47788487 47788651 -53591870 - MIR3 SINE MIR -1 207 38 1442 251 78 0 chr15 47789118 47789505 -53591016 + LTR16A LTR ERVL 29 445 -5 725 153 90 23 chr15 47789510 47789687 -53590834 - MER53 DNA DNA 0 189 1 1763 270 33 36 chr15 47789689 47790264 -53590257 + HERV16 LTR ERVL 7 579 -4417 1397 179 48 96 chr15 47790347 47790700 -53589821 - MER58B DNA MER1_type -5 336 1 814 273 84 4 chr15 47790888 47791115 -53589406 - MIR SINE MIR -15 247 3 701 227 34 34 chr15 47791373 47791580 -53588941 - L1MEc LINE L1 -3922 2474 2268 641 292 99 5 chr15 47791580 47791782 -53588739 + MER58A DNA MER1_type 1 221 -3 592 182 76 72 chr15 47791825 47792061 -53588460 - L1MEc LINE L1 -4121 2275 2039 12128 152 38 7 chr15 47792089 47794064 -53586457 + L1M1 LINE L1 10 2044 -5521 2675 95 11 48 chr15 47794064 47794442 -53586079 - THE1B LTR MaLR 0 364 1 3021 75 40 0 chr15 47794442 47794842 -53585679 - THE1B-int LTR MaLR 0 1580 1165 1652 146 5 75 chr15 47794842 47795211 -53585310 - MER4A LTR ERV1 0 664 263 511 135 31 10 chr15 47795211 47795307 -53585214 - MER4A LTR ERV1 -566 98 1 4118 106 70 21 chr15 47795309 47795979 -53584542 - MER4A-int LTR ERV1 0 6598 5896 270 21 64 0 chr15 47796007 47796054 -53584467 + (TTG)n Simple_repeat Simple_repeat 2 51 0 44064 29 21 1 chr15 47796058 47802088 -53578433 - L1HS LINE L1 -3 6152 2 11461 124 90 62 chr15 47802088 47805558 -53574963 - MER4A-int LTR ERV1 -615 5912 1203 2387 77 3 10 chr15 47805558 47805871 -53574650 - AluY SINE Alu 0 311 1 11461 124 90 62 chr15 47805871 47806394 -53574127 - MER4A-int LTR ERV1 -5324 1203 696 387 0 0 0 chr15 47806394 47806437 -53574084 + (CA)n Simple_repeat Simple_repeat 2 44 0 1295 107 42 32 chr15 47806438 47806654 -53573867 - MER4A-int LTR ERV1 -5486 1112 895 * 2658 73 71 73 chr15 47806653 47807090 -53573431 - MER4A-int LTR ERV1 -6162 436 1 1983 113 158 75 chr15 47807093 47807466 -53573055 - MER4A LTR ERV1 0 664 261 379 129 0 141 chr15 47807472 47807523 -53572998 - THE1B-int LTR MaLR -1492 88 52 2411 78 0 13 chr15 47807523 47807831 -53572690 - AluY SINE Alu -7 304 1 379 129 0 141 chr15 47807831 47807864 -53572657 - THE1B-int LTR MaLR -1528 52 16 569 153 10 10 chr15 47807867 47807965 -53572556 + MER4A LTR ERV1 1 98 -566 1529 129 19 101 chr15 47807965 47808337 -53572184 + MER4A LTR ERV1 263 662 -2 2508 142 6 3 chr15 47808359 47808718 -53571803 - THE1B LTR MaLR -4 360 1 8541 134 76 23 chr15 47808718 47809004 -53571517 + L1M1 LINE L1 2040 2309 -5256 1837 170 13 0 chr15 47809004 47809304 -53571217 - AluSx SINE Alu -8 304 1 8541 134 76 23 chr15 47809304 47810698 -53569823 + L1M1 LINE L1 2309 3628 -3937 1509 164 160 11 chr15 47810698 47810961 -53569560 + AluJb SINE Alu 1 302 0 8541 134 76 23 chr15 47810961 47811007 -53569514 + L1M1 LINE L1 3628 3670 -3895 2204 117 0 0 chr15 47811007 47811298 -53569223 + AluSx SINE Alu 1 291 -21 8541 134 76 23 chr15 47811298 47811557 -53568964 + L1M1 LINE L1 3670 4132 -3433 3433 209 90 37 chr15 47811555 47812857 -53567664 - L1 LINE L1 -3136 4429 3065 * 16075 146 31 8 chr15 47812865 47815096 -53565425 - L1MA1 LINE L1 -6 7715 5538 201 39 0 0 chr15 47815096 47815122 -53565399 + (TG)n Simple_repeat Simple_repeat 1 26 0 16075 146 31 8 chr15 47815122 47815816 -53564705 - L1MA1 LINE L1 -2183 5538 4862 2169 98 6 46 chr15 47815816 47815852 -53564669 - AluSq SINE Alu 0 313 277 216 0 0 0 chr15 47815852 47815876 -53564645 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2169 98 6 46 chr15 47815876 47816165 -53564356 - AluSq SINE Alu -36 277 1 16075 146 31 8 chr15 47816165 47816367 -53564154 - L1MA1 LINE L1 -2859 4862 4666 2198 133 0 0 chr15 47816367 47816669 -53563852 + AluSx SINE Alu 1 302 -10 16075 146 31 8 chr15 47816669 47820798 -53559723 - L1MA1 LINE L1 -3055 4666 270 1182 208 59 0 chr15 47820802 47821057 -53559464 - L1MA7 LINE L1 -401 5890 5621 4439 219 70 107 chr15 47821059 47823158 -53557363 - L1 LINE L1 -5007 2482 460 2490 247 119 22 chr15 47823190 47823289 -53557232 - L1MEc LINE L1 -4370 2026 1938 1467 123 5 5 chr15 47823289 47823493 -53557028 - AluSq SINE Alu -109 204 1 2490 247 119 22 chr15 47823493 47824384 -53556137 - L1MEc LINE L1 -4458 1938 940 2514 243 89 29 chr15 47824385 47824743 -53555778 - L1MEc LINE L1 -5480 916 581 1546 158 73 43 chr15 47824743 47824874 -53555647 - MER44D DNA MER2_type -1882 609 483 2210 115 0 0 chr15 47824874 47825161 -53555360 + AluSx SINE Alu 1 287 -25 1546 158 73 43 chr15 47825161 47825358 -53555163 - MER44D DNA MER2_type -2008 483 1 2514 243 89 29 chr15 47825358 47825487 -53555034 - L1MEc LINE L1 -5815 581 461 2564 110 6 3 chr15 47825487 47825850 -53554671 + THE1B LTR MaLR 1 364 0 2514 243 89 29 chr15 47825850 47826196 -53554325 - L1MEc LINE L1 -5935 461 32 299 278 44 0 chr15 47826451 47826541 -53553980 + L2 LINE L2 3179 3272 0 492 156 26 0 chr15 47828367 47828444 -53552077 + Tigger5 DNA MER2_type 1 79 -2244 358 203 40 0 chr15 47828445 47828519 -53552002 - Tigger5 DNA MER2_type -5 2318 2242 * 449 154 0 39 chr15 47828517 47828595 -53551926 + Tigger5 DNA MER2_type 2249 2323 0 715 201 0 8 chr15 47829987 47830121 -53550400 + FLAM_C SINE Alu 1 133 0 5669 119 67 5 chr15 47830950 47832082 -53548439 + L1PB2 LINE L1 4954 6148 -3 180 310 69 35 chr15 47832876 47832963 -53547558 + L3b LINE CR1 1456 1545 -38 2332 89 0 0 chr15 47833342 47833635 -53546886 - AluSg SINE Alu -16 294 2 1408 204 37 20 chr15 47834238 47834532 -53545989 - AluJo SINE Alu -13 299 1 23 33 0 0 chr15 47835212 47835242 -53545279 + AT_rich Low_complexity Low_complexity 1 30 0 371 180 22 79 chr15 47835609 47835698 -53544823 + MIR SINE MIR 100 183 -79 1984 139 0 0 chr15 47835737 47836024 -53544497 + AluJb SINE Alu 7 293 -19 225 0 0 0 chr15 47837736 47837761 -53542760 + (CAG)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr15 47838871 47838900 -53541621 + AT_rich Low_complexity Low_complexity 1 29 0 1082 179 72 0 chr15 47839693 47839888 -53540633 - MER3 DNA MER1_type 0 209 1 1638 156 47 14 chr15 47840406 47840681 -53539840 - AluJb SINE Alu -28 284 1 2381 84 0 3 chr15 47841182 47841478 -53539043 - AluSp SINE Alu -18 295 1 1692 148 25 14 chr15 47842963 47843241 -53537280 + AluJb SINE Alu 2 282 -30 185 0 40 0 chr15 47843247 47843272 -53537249 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 349 293 45 19 chr15 47843350 47843507 -53537014 - L1ME LINE L1 -437 5684 5524 23 0 0 0 chr15 47843738 47843761 -53536760 + AT_rich Low_complexity Low_complexity 1 23 0 1839 172 7 3 chr15 47843955 47844252 -53536269 + AluJb SINE Alu 1 298 -14 21 57 0 0 chr15 47844362 47844397 -53536124 + AT_rich Low_complexity Low_complexity 1 35 0 60 64 0 0 chr15 47845166 47845275 -53535246 + AT_rich Low_complexity Low_complexity 1 109 0 23 0 0 0 chr15 47845719 47845742 -53534779 + AT_rich Low_complexity Low_complexity 1 23 0 201 289 0 0 chr15 47845997 47846042 -53534479 + polypurine Low_complexity Low_complexity 3 47 0 410 296 87 15 chr15 47846401 47846568 -53533953 + L1MC4 LINE L1 5455 5639 -482 2537 60 0 0 chr15 47846568 47846867 -53533654 - AluY SINE Alu -12 299 1 410 296 87 15 chr15 47846867 47846895 -53533626 + L1MC4 LINE L1 5639 5664 -457 2824 220 99 59 chr15 47846999 47847801 -53532720 + L1MC5 LINE L1 6650 7519 -442 198 0 0 0 chr15 47847801 47847823 -53532698 + (GA)n Simple_repeat Simple_repeat 2 23 0 2824 220 99 59 chr15 47847823 47848237 -53532284 + L1MC5 LINE L1 7519 7915 -46 247 254 153 0 chr15 47848360 47848478 -53532043 + L1ME4a LINE L1 5965 6100 -21 1144 178 5 0 chr15 47848788 47848973 -53531548 - MER5A DNA MER1_type -3 186 1 1387 210 31 14 chr15 47848987 47849273 -53531248 - AluJo SINE Alu -21 291 1 994 276 117 30 chr15 47851063 47851200 -53529321 + L2 LINE L2 2463 2587 -726 2407 153 19 0 chr15 47851200 47851618 -53528903 - L1MB5 LINE L1 0 6174 5749 994 276 117 30 chr15 47851618 47852114 -53528407 + L2 LINE L2 2587 3150 -163 3575 166 112 59 chr15 47853550 47854052 -53526469 + L1MC4 LINE L1 6985 7459 -583 2335 104 0 7 chr15 47854052 47854360 -53526161 + AluSx SINE Alu 1 306 -6 3575 166 112 59 chr15 47854360 47854859 -53525662 + L1MC4 LINE L1 7459 8039 -3 23 0 0 0 chr15 47856053 47856076 -53524445 + AT_rich Low_complexity Low_complexity 1 23 0 209 189 0 0 chr15 47857812 47857849 -53522672 - L3 LINE CR1 -3 1574 1538 351 306 0 0 chr15 47859087 47859172 -53521349 - L2 LINE L2 -2 3270 3186 1081 268 134 38 chr15 47860673 47861646 -53518875 + L1MC4 LINE L1 5844 7020 -873 * 7070 194 33 39 chr15 47861636 47864173 -53516348 + L1M2c LINE L1 2 2270 -4519 268 292 130 21 chr15 47864342 47864534 -53515987 - L1MC4a LINE L1 -1907 5901 5689 22 56 0 0 chr15 47866042 47866078 -53514443 + AT_rich Low_complexity Low_complexity 1 36 0 2249 123 0 0 chr15 47866299 47866600 -53513921 - AluSx SINE Alu -11 301 1 21 0 0 0 chr15 47867021 47867042 -53513479 + AT_rich Low_complexity Low_complexity 1 21 0 660 264 90 0 chr15 47867699 47867900 -53512621 - MIR SINE MIR 0 262 44 2116 132 7 0 chr15 47868217 47868527 -53511994 + AluSx SINE Alu 1 312 0 239 320 66 8 chr15 47869090 47869212 -53511309 + MER5B DNA MER1_type 21 149 -29 323 314 90 13 chr15 47869401 47869557 -53510964 + MIR SINE MIR 66 233 -29 2204 119 0 0 chr15 47870003 47870298 -53510223 + AluSq SINE Alu 3 297 -16 196 276 46 35 chr15 47870919 47871006 -53509515 - MIR SINE MIR -150 112 25 27 29 0 0 chr15 47871956 47871990 -53508531 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr15 47872117 47872140 -53508381 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr15 47872742 47872772 -53507749 + AT_rich Low_complexity Low_complexity 1 30 0 719 247 68 44 chr15 47872815 47873111 -53507410 + L1ME4a LINE L1 5539 5841 -280 308 304 20 20 chr15 47873255 47873357 -53507164 + MIR SINE MIR 46 147 -61 257 56 481 0 chr15 47874793 47874847 -53505674 - MADE1 DNA Mariner 0 80 1 684 202 0 8 chr15 47874859 47874983 -53505538 - FLAM_C SINE Alu -16 127 5 1038 268 100 6 chr15 47874992 47875321 -53505200 - L2 LINE L2 -1 3312 2953 1161 244 133 37 chr15 47875334 47875716 -53504805 - L2 LINE L2 -499 2815 2397 257 181 193 12 chr15 47875696 47875779 -53504742 + MIR SINE MIR 70 167 -95 * 443 335 80 24 chr15 47876176 47876388 -53504133 + MIR SINE MIR 13 236 -26 189 196 0 107 chr15 47876369 47876425 -53504096 + L2 LINE L2 3222 3271 -1 * 1629 189 0 24 chr15 47876803 47877100 -53503421 + AluJo SINE Alu 11 300 -12 237 325 99 8 chr15 47879711 47879829 -53500692 + MIR SINE MIR 21 147 -87 2500 61 3 0 chr15 47880482 47880779 -53499742 + AluY SINE Alu 1 298 -13 2419 73 0 10 chr15 47880791 47881094 -53499427 + AluY SINE Alu 1 300 -11 309 68 0 0 chr15 47881141 47881185 -53499336 + (TG)n Simple_repeat Simple_repeat 1 44 0 1907 132 0 14 chr15 47881185 47881465 -53499056 - AluSx SINE Alu -36 276 1 23 0 0 0 chr15 47881877 47881900 -53498621 + AT_rich Low_complexity Low_complexity 1 23 0 3992 134 30 4 chr15 47882022 47882699 -53497822 + L1MA4A LINE L1 5602 6295 -8 312 364 109 0 chr15 47882878 47883043 -53497478 - MER5A DNA MER1_type 0 189 7 315 318 37 19 chr15 47883053 47883160 -53497361 - MIR SINE MIR -58 150 42 230 220 132 22 chr15 47883337 47883428 -53497093 + L2 LINE L2 3145 3245 -68 367 276 60 30 chr15 47883571 47883705 -53496816 + MIR3 SINE MIR 30 167 -41 278 295 117 20 chr15 47883761 47883890 -53496631 + MIR SINE MIR 15 151 -104 185 217 43 0 chr15 47883907 47883953 -53496568 + L2 LINE L2 3210 3257 -15 1457 198 42 4 chr15 47884938 47885201 -53495320 - AluJo SINE Alu -35 277 5 2640 43 0 0 chr15 47885293 47885595 -53494926 - AluY SINE Alu -9 302 1 369 314 18 14 chr15 47886241 47886461 -53494060 + L1MC4 LINE L1 6885 7105 -937 317 250 21 42 chr15 47886549 47886645 -53493876 + L1MC5 LINE L1 6979 7072 -889 448 248 31 108 chr15 47886850 47886932 -53493589 + L1MC5 LINE L1 6656 6743 -1218 1818 83 0 0 chr15 47886932 47887174 -53493347 + L1PA7 LINE L1 5905 6146 -8 448 248 31 108 chr15 47887174 47887414 -53493107 + L1MC5 LINE L1 6743 6953 -1008 236 194 177 0 chr15 47887397 47887459 -53493062 + L1ME3A LINE L1 6093 6165 -5 * 578 250 22 49 chr15 47887554 47887778 -53492743 + L1MC5 LINE L1 7004 7221 -740 355 265 95 74 chr15 47887928 47888056 -53492465 + L1MC5 LINE L1 7311 7435 -526 15723 88 5 1 chr15 47888056 47891039 -53489482 + L1PA7 LINE L1 3144 6147 -7 355 265 95 74 chr15 47891039 47891371 -53489150 + L1MC5 LINE L1 7435 7788 -173 1876 135 10 20 chr15 47891371 47891675 -53488846 + AluSq SINE Alu 1 301 -12 355 265 95 74 chr15 47891675 47891805 -53488716 + L1MC5 LINE L1 7788 7914 -47 1490 148 19 12 chr15 47895489 47895746 -53484775 - L1PB3 LINE L1 -3 6151 5893 450 345 32 53 chr15 47896675 47897035 -53483486 + ERVL LTR ERVL 772 1123 -4531 2128 113 7 3 chr15 47897035 47897336 -53483185 + AluSx SINE Alu 1 302 -10 450 345 32 53 chr15 47897336 47897410 -53483111 + ERVL LTR ERVL 1123 1197 -4457 254 200 291 18 chr15 47897442 47897583 -53482938 + MER5A DNA MER1_type 4 189 0 525 131 12 0 chr15 47897591 47897675 -53482846 - MER5B DNA MER1_type 0 178 94 249 81 0 0 chr15 47897676 47897713 -53482808 + MER5B DNA MER1_type 141 177 -1 325 305 6 67 chr15 47897718 47897882 -53482639 + ERVL LTR ERVL 4396 4549 -1215 788 212 48 0 chr15 47897890 47898079 -53482442 - MER96B DNA MER1_type? -7 410 213 1430 158 5 9 chr15 47898181 47898402 -53482119 - AluJo SINE Alu -92 220 1 2286 118 0 0 chr15 47898621 47898927 -53481594 - AluSq SINE Alu -7 306 1 1834 28 0 0 chr15 47898959 47899170 -53481351 - AluYb8 SINE Alu 0 318 108 235 329 40 0 chr15 47899345 47899421 -53481100 - L2 LINE L2 -600 2714 2636 370 399 45 11 chr15 47899439 47899705 -53480816 + L2 LINE L2 2807 3081 -191 2089 122 0 0 chr15 47899983 47900297 -53480224 + AluSx SINE Alu 6 319 0 22 0 0 0 chr15 47900475 47900497 -53480024 + AT_rich Low_complexity Low_complexity 1 22 0 984 291 8 0 chr15 47900574 47900815 -53479706 + MIR SINE MIR 10 252 -10 639 39 0 0 chr15 47900818 47900896 -53479625 + (TAG)n Simple_repeat Simple_repeat 1 78 0 186 303 204 0 chr15 47901099 47901231 -53479290 + L2 LINE L2 3118 3276 -37 2051 126 7 3 chr15 47901767 47902076 -53478445 + AluSx SINE Alu 1 310 -2 1022 224 141 9 chr15 47902867 47903193 -53477328 + MLT1C LTR MaLR 6 374 -93 1711 216 61 13 chr15 47903193 47903655 -53476866 + L1M4 LINE L1 2445 2928 -3218 20356 153 34 36 chr15 47903735 47904772 -53475749 + L1MA2 LINE L1 13 1051 -6672 307 130 0 0 chr15 47904772 47904818 -53475703 + U6 snRNA snRNA 1 46 -61 20356 153 34 36 chr15 47904818 47906849 -53473672 + L1MA2 LINE L1 1051 3085 -4638 1932 123 27 3 chr15 47906849 47907142 -53473379 + AluSx SINE Alu 1 300 -12 20356 153 34 36 chr15 47907142 47909872 -53470649 + L1MA2 LINE L1 3085 5834 -1889 2047 115 13 13 chr15 47909872 47910176 -53470345 + AluY SINE Alu 1 304 -7 20356 153 34 36 chr15 47910176 47911968 -53468553 + L1MA2 LINE L1 5834 7629 -94 1614 95 32 0 chr15 47912107 47912359 -53468162 + L1MA2 LINE L1 6041 6300 -4 1387 247 22 43 chr15 47912374 47912835 -53467686 + L1M4 LINE L1 4015 4465 -1681 754 132 16 25 chr15 47912881 47913002 -53467519 - FLAM_C SINE Alu -23 120 1 436 182 159 0 chr15 47913015 47913147 -53467374 + L1ME LINE L1 2000 2152 -4244 257 299 52 24 chr15 47913374 47913586 -53466935 + L3 LINE CR1 417 707 -870 822 281 163 17 chr15 47914047 47914452 -53466069 + L3 LINE CR1 1113 1576 -1 201 248 209 57 chr15 47914804 47914909 -53465612 + L2 LINE L2 3182 3302 -11 223 300 0 0 chr15 47917852 47917912 -53462609 + L2 LINE L2 3209 3268 -4 316 273 50 50 chr15 48018996 48019117 -53361404 + MIR SINE MIR 84 204 -58 340 252 223 0 chr15 48019798 48019937 -53360584 - MIR SINE MIR -10 252 83 31 0 0 0 chr15 48020397 48020428 -53360093 + GC_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr15 48020759 48020787 -53359734 + GC_rich Low_complexity Low_complexity 1 28 0 311 305 102 70 chr15 48021981 48022168 -53358353 + L1MC4 LINE L1 7437 7629 -413 453 240 16 156 chr15 48022196 48022567 -53357954 + L1MC4 LINE L1 7722 8040 -2 1444 148 33 60 chr15 48023119 48023450 -53357071 - MER33 DNA MER1_type -1 323 2 25 0 0 0 chr15 48025666 48025691 -53354830 + AT_rich Low_complexity Low_complexity 1 25 0 2006 203 57 0 chr15 48026049 48026454 -53354067 + MSTA LTR MaLR 1 428 0 25 0 0 0 chr15 48026962 48026987 -53353534 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chr15 48027252 48027291 -53353230 + AT_rich Low_complexity Low_complexity 1 39 0 734 256 49 49 chr15 48028819 48029065 -53351456 - MIR SINE MIR -7 255 10 683 164 121 0 chr15 48029768 48029908 -53350613 - MER58C DNA MER1_type 0 215 59 570 175 191 26 chr15 48030647 48030836 -53349685 + L1ME LINE L1 2864 3083 -3132 6647 82 7 6 chr15 48030882 48031869 -53348652 - L1PB1 LINE L1 -3 6148 5161 1630 199 3 0 chr15 48031869 48032186 -53348335 + L1MEc LINE L1 3736 4053 -2162 857 193 28 5 chr15 48032280 48032493 -53348028 - L1MA7 LINE L1 0 6291 6074 570 312 91 85 chr15 48033607 48034323 -53346198 - L2 LINE L2 0 3272 2550 822 306 119 32 chr15 48034467 48035219 -53345302 + L2 LINE L2 1968 3312 -1 2041 146 12 107 chr15 48035425 48035904 -53344617 + Tigger2a DNA MER2_type 1 434 0 1006 269 56 69 chr15 48036576 48036791 -53343730 - L2 LINE L2 -414 2900 2684 2073 128 0 0 chr15 48036791 48037080 -53343441 + AluSx SINE Alu 1 289 -23 1006 269 56 69 chr15 48037080 48037313 -53343208 - L2 LINE L2 -630 2684 2458 237 259 84 45 chr15 48037313 48037463 -53343058 - L2 LINE L2 -1055 2259 2059 230 162 0 0 chr15 48037470 48037507 -53343014 + L1MC1 LINE L1 6005 6041 -292 * 3688 272 84 21 chr15 48037502 48037977 -53342544 + L1ME LINE L1 3279 3723 -2492 2676 39 0 0 chr15 48037977 48038288 -53342233 + AluY SINE Alu 1 311 0 3688 272 84 21 chr15 48038288 48038406 -53342115 + L1ME LINE L1 3723 3832 -2383 1992 147 3 0 chr15 48038406 48038706 -53341815 + AluSx SINE Alu 1 301 -11 3688 272 84 21 chr15 48038706 48039828 -53340693 + L1ME LINE L1 3832 5103 -1112 259 260 110 0 chr15 48039931 48040004 -53340517 + LTR16C LTR ERVL 33 113 -378 504 193 0 44 chr15 48040174 48040288 -53340233 + LTR16C LTR ERVL 382 490 -1 691 216 27 6 chr15 48040298 48040517 -53340004 + Charlie4 DNA MER1_type 45 302 -1659 806 197 44 15 chr15 48040759 48040962 -53339559 + Charlie4 DNA MER1_type 1744 1952 -9 1201 254 53 25 chr15 48041043 48041348 -53339173 + L1ME LINE L1 5193 5488 -751 1853 154 3 19 chr15 48041348 48041659 -53338862 + AluJo SINE Alu 1 306 -6 1201 254 53 25 chr15 48041659 48041932 -53338589 + L1ME LINE L1 5488 5790 -449 560 247 114 14 chr15 48042137 48042356 -53338165 + L1MC5 LINE L1 7679 7919 -42 1060 172 52 60 chr15 48042380 48042612 -53337909 + AluJb SINE Alu 81 310 -2 21 0 0 0 chr15 48042690 48042711 -53337810 + AT_rich Low_complexity Low_complexity 1 21 0 23 86 0 0 chr15 48042844 48042902 -53337619 + AT_rich Low_complexity Low_complexity 1 58 0 545 259 150 11 chr15 48042908 48043194 -53337327 + HAL1 LINE L1 1031 1356 -1151 1577 221 6 0 chr15 48043195 48043521 -53337000 - L1M2b LINE L1 -5296 1913 1586 1418 152 38 9 chr15 48043514 48044165 -53336356 + L1MA4 LINE L1 5560 6295 -5 * 1192 273 164 64 chr15 48044185 48045046 -53335475 + HAL1 LINE L1 1561 2507 0 268 338 101 0 chr15 48045092 48045240 -53335281 - MIR SINE MIR 0 262 100 22 0 0 0 chr15 48045490 48045512 -53335009 + AT_rich Low_complexity Low_complexity 1 22 0 218 311 126 11 chr15 48045595 48045778 -53334743 + L2 LINE L2 2302 2505 -809 30 27 0 0 chr15 48046953 48046990 -53333531 + AT_rich Low_complexity Low_complexity 1 37 0 489 350 79 35 chr15 48047277 48047617 -53332904 + L2 LINE L2 2877 3231 -41 23 54 0 0 chr15 48047783 48047820 -53332701 + AT_rich Low_complexity Low_complexity 1 37 0 1540 179 0 15 chr15 48047871 48048139 -53332382 + AluJo SINE Alu 28 291 -21 458 17 17 0 chr15 48048139 48048198 -53332323 + (TG)n Simple_repeat Simple_repeat 1 60 0 23 54 0 0 chr15 48048652 48048689 -53331832 + AT_rich Low_complexity Low_complexity 1 37 0 851 281 164 52 chr15 48048917 48048961 -53331560 - L2 LINE L2 -5 3308 3270 2109 128 0 0 chr15 48048961 48049259 -53331262 - AluSg SINE Alu -12 298 1 851 281 164 52 chr15 48049259 48049720 -53330801 - L2 LINE L2 -43 3270 2705 1658 193 23 0 chr15 48049720 48050021 -53330500 + AluJb SINE Alu 1 308 -4 851 281 164 52 chr15 48050021 48050169 -53330352 - L2 LINE L2 -608 2705 2575 26508 114 23 21 chr15 48050732 48054996 -53325525 + L1P LINE L1 10 4281 -1865 6089 50 5 5 chr15 48054996 48055767 -53324754 + L1PA7 LINE L1 5373 6147 -7 31 68 0 0 chr15 48055785 48055844 -53324677 + AT_rich Low_complexity Low_complexity 1 59 0 181 268 36 18 chr15 48057527 48057583 -53322938 - L2 LINE L2 -1 3271 3215 180 0 0 0 chr15 48058103 48058123 -53322398 + (A)n Simple_repeat Simple_repeat 1 20 0 386 305 92 46 chr15 48059648 48059867 -53320654 + MIR SINE MIR 4 222 -40 231 297 237 0 chr15 48060048 48060166 -53320355 - MIR SINE MIR -70 192 47 286 233 68 14 chr15 48060407 48060480 -53320041 - MER5A DNA MER1_type 0 189 113 257 194 69 28 chr15 48060425 48060497 -53320024 + MER5A DNA MER1_type 35 109 -80 * 445 280 93 18 chr15 48060510 48060735 -53319786 + L1MC/D LINE L1 5574 5815 -1993 1914 171 0 0 chr15 48060742 48061040 -53319481 + AluJb SINE Alu 1 298 -14 325 308 100 15 chr15 48061389 48061519 -53319002 + L2 LINE L2 3173 3313 0 331 231 259 21 chr15 48061745 48061888 -53318633 - MIR SINE MIR -1 261 85 1750 142 71 34 chr15 48062986 48063311 -53317210 + MER1B DNA MER1_type 1 337 0 26 0 0 0 chr15 48064752 48064778 -53315743 + AT_rich Low_complexity Low_complexity 1 26 0 328 233 104 75 chr15 48064795 48065035 -53315486 - L1MC4a LINE L1 -1750 6058 5812 6224 8 0 0 chr15 48065051 48065755 -53314766 - L1HS LINE L1 0 6155 5452 558 169 0 0 chr15 48065855 48065944 -53314577 - AluJ/FLAM SINE Alu -223 89 1 557 216 96 112 chr15 48066072 48066233 -53314288 - L1MC4 LINE L1 -4 8038 7876 1923 148 3 3 chr15 48066233 48066537 -53313984 - AluSx SINE Alu -2 310 7 557 216 96 112 chr15 48066537 48066731 -53313790 - L1MC4 LINE L1 -166 7876 7689 21 36 0 0 chr15 48066968 48066996 -53313525 + AT_rich Low_complexity Low_complexity 1 28 0 223 300 0 0 chr15 48067367 48067427 -53313094 - L2 LINE L2 -4 3268 3209 5290 24 0 0 chr15 48070009 48070633 -53309888 - L1P LINE L1 -1660 4486 3863 849 265 154 24 chr15 48070633 48071093 -53309428 - L1MC4a LINE L1 -1985 5823 5304 7518 30 0 0 chr15 48072388 48073354 -53307167 - L1PA4 LINE L1 -6 6149 5185 1673 161 3 67 chr15 48073377 48073693 -53306828 - AluJb SINE Alu -16 296 1 395 289 14 50 chr15 48074975 48075193 -53305328 + L1ME LINE L1 5555 5764 -357 725 172 57 0 chr15 48075783 48075905 -53304616 - FLAM_A SINE Alu -4 129 1 256 254 107 49 chr15 48075957 48076079 -53304442 - L2 LINE L2 -3 3310 3182 40037 45 5 2 chr15 48076162 48081397 -53299124 + L1P LINE L1 1 5251 -895 4524 164 43 52 chr15 48081526 48082435 -53298086 + MER54A LTR ERVL 1 901 0 492 256 40 54 chr15 48082461 48082533 -53297988 + L1MC4 LINE L1 6480 6551 -1491 2202 116 0 0 chr15 48082533 48082827 -53297694 + AluY SINE Alu 1 294 -17 492 256 40 54 chr15 48082827 48082977 -53297544 + L1MC4 LINE L1 6551 6699 -1343 280 204 31 82 chr15 48083040 48083138 -53297383 - L1MC4 LINE L1 -1290 6752 6660 * 4861 189 110 19 chr15 48083086 48084359 -53296162 + L1MC4 LINE L1 6654 8042 0 1467 251 118 14 chr15 48084385 48085157 -53295364 + L1ME3A LINE L1 5119 5962 -208 233 261 76 50 chr15 48085217 48085336 -53295185 + L1ME3A LINE L1 5970 6091 -79 3304 35 0 0 chr15 48085447 48085841 -53294680 - L1PA4 LINE L1 0 6155 5762 596 231 84 74 chr15 48086440 48086751 -53293770 + L1MEd LINE L1 785 1098 -5311 3496 238 131 18 chr15 48086763 48087310 -53293211 + L1MDb LINE L1 3304 3788 -2618 2082 131 0 3 chr15 48087310 48087615 -53292906 + AluSg SINE Alu 1 304 -6 3496 238 131 18 chr15 48087615 48088843 -53291678 + L1MDb LINE L1 3788 5286 -1120 1986 156 0 0 chr15 48088935 48089224 -53291297 - AluSx SINE Alu -23 289 1 2772 28 0 0 chr15 48089248 48089566 -53290955 - AluYb8 SINE Alu 0 318 1 1953 92 48 4 chr15 48089946 48090218 -53290303 - AluSq SINE Alu -29 284 1 502 265 105 56 chr15 48090476 48090600 -53289921 + L1MEd LINE L1 1218 1334 -5253 2066 124 3 7 chr15 48090600 48090898 -53289623 + AluSx SINE Alu 1 297 -15 2515 69 0 0 chr15 48090898 48091203 -53289318 + AluY SINE Alu 1 305 -6 502 265 105 56 chr15 48091203 48091640 -53288881 + L1MEd LINE L1 1334 1748 -4839 2186 114 3 0 chr15 48091640 48091937 -53288584 + AluSx SINE Alu 14 311 -1 3502 129 9 5 chr15 48091937 48092495 -53288026 + L1PA15 LINE L1 5606 6165 0 502 265 105 56 chr15 48092495 48092654 -53287867 + L1MEd LINE L1 1747 2007 -4580 737 275 108 30 chr15 48092816 48093105 -53287416 + L1MEd LINE L1 2223 2488 -3918 1721 158 25 76 chr15 48093105 48093370 -53287151 + MER7A DNA MER2_type 1 241 -2797 2303 106 0 3 chr15 48093370 48093671 -53286850 + AluSq SINE Alu 1 300 -13 1721 158 25 76 chr15 48093671 48093772 -53286749 + MER7A DNA MER2_type 241 346 0 737 275 108 30 chr15 48093772 48094210 -53286311 + L1MEd LINE L1 2488 3004 -3402 2492 61 0 0 chr15 48094210 48094506 -53286015 + AluY SINE Alu 1 296 -15 737 275 108 30 chr15 48094506 48094670 -53285851 + L1MEd LINE L1 3004 3154 -3252 566 271 90 18 chr15 48094690 48095136 -53285385 + L1MEd LINE L1 3228 3705 -2701 258 227 0 0 chr15 48095197 48095263 -53285258 + L1ME4a LINE L1 5983 6048 -73 313 374 0 17 chr15 48095320 48095435 -53285086 + MIR SINE MIR 30 142 -66 235 250 0 0 chr15 48095435 48095487 -53285034 + LTR30 LTR ERV1 1 52 -670 403 179 28 117 chr15 48095491 48095670 -53284851 + LTR12 LTR ERV1 123 285 -429 329 178 44 33 chr15 48095670 48095760 -53284761 + LTR30 LTR ERV1 552 642 -80 661 120 0 0 chr15 48095763 48095863 -53284658 + LTR12 LTR ERV1 615 714 0 6759 112 27 16 chr15 48096106 48097165 -53283356 - MER11C LTR ERVK 0 1071 1 21 0 0 0 chr15 48097366 48097387 -53283134 + AT_rich Low_complexity Low_complexity 1 21 0 1582 183 61 26 chr15 48097690 48098067 -53282454 + MLT1B LTR MaLR 1 390 0 196 333 18 0 chr15 48098417 48098474 -53282047 - L2 LINE L2 -19 3294 3237 1454 274 111 26 chr15 48098476 48098973 -53281548 - L2 LINE L2 -518 2796 2258 316 277 40 79 chr15 48099013 48099124 -53281397 - L2 LINE L2 -1650 1664 1563 1071 206 0 18 chr15 48099124 48099343 -53281178 - MER20 DNA MER1_type 0 219 5 316 277 40 79 chr15 48099343 48099433 -53281088 - L2 LINE L2 -1751 1563 1471 2296 118 3 0 chr15 48100379 48100684 -53279837 + AluSx SINE Alu 1 306 -6 357 315 102 32 chr15 48100712 48100928 -53279593 - L3 LINE CR1 -1135 442 212 23 0 0 0 chr15 48102269 48102292 -53278229 + AT_rich Low_complexity Low_complexity 1 23 0 211 184 0 0 chr15 48103531 48103569 -53276952 + (CCCA)n Simple_repeat Simple_repeat 2 39 0 237 125 62 16 chr15 48103755 48103819 -53276702 + (TTA)n Simple_repeat Simple_repeat 3 69 0 259 370 55 11 chr15 48107715 48107896 -53272625 - L2 LINE L2 -498 2816 2628 2253 224 13 40 chr15 48109500 48109671 -53270850 - MLT1F LTR MaLR 0 542 368 1411 171 16 32 chr15 48109671 48109986 -53270535 + L1MB8 LINE L1 5869 6178 0 2253 224 13 40 chr15 48109986 48110371 -53270150 - MLT1F LTR MaLR -174 368 1 2053 116 3 3 chr15 48110411 48110703 -53269818 + AluSp SINE Alu 1 292 -21 22 0 0 0 chr15 48110832 48110854 -53269667 + AT_rich Low_complexity Low_complexity 1 22 0 606 255 247 27 chr15 48111149 48111568 -53268953 - MLT1H LTR MaLR -23 526 6 2060 92 48 27 chr15 48112313 48112605 -53267916 + AluSq SINE Alu 1 298 -15 695 278 75 53 chr15 48112797 48113117 -53267404 + MLT1J LTR MaLR 25 351 -160 1898 152 13 13 chr15 48113119 48113471 -53267050 + AluJb SINE Alu 2 353 0 494 226 62 0 chr15 48113498 48113644 -53266877 + MLT1J LTR MaLR 356 510 -1 396 59 0 0 chr15 48113651 48113702 -53266819 + (TG)n Simple_repeat Simple_repeat 2 52 0 229 283 0 0 chr15 48113705 48113758 -53266763 + L2 LINE L2 3204 3256 -16 1988 147 78 13 chr15 48114634 48115029 -53265492 + L1MB5 LINE L1 5746 6166 -8 239 289 109 26 chr15 48115069 48115225 -53265296 + L1ME4a LINE L1 5952 6120 -1 444 214 7 43 chr15 48115861 48116001 -53264520 - LTR37B LTR ERV1 0 468 334 198 255 99 57 chr15 48116338 48116479 -53264042 - L2 LINE L2 -15 3298 3152 334 268 0 0 chr15 48116718 48116800 -53263721 - MIR SINE MIR -74 188 107 1562 179 19 51 chr15 48118034 48118204 -53262317 - AluJo SINE Alu -10 302 128 228 35 0 0 chr15 48118204 48118233 -53262288 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2117 102 3 0 chr15 48118233 48118516 -53262005 - AluSp SINE Alu -29 284 1 1562 179 19 51 chr15 48118516 48118656 -53261865 - AluJo SINE Alu -182 130 1 3281 124 36 2 chr15 48118947 48119472 -53261049 - MER41B LTR ERV1 -88 547 5 3682 85 34 6 chr15 48119475 48120004 -53260517 - MER41B-int LTR ERV1 0 5946 5403 * 10262 121 21 11 chr15 48120001 48121584 -53258937 - MER41A-int LTR ERV1 -4347 1599 1 824 138 0 72 chr15 48121584 48121708 -53258813 - MER41A LTR ERV1 0 554 443 2443 60 0 7 chr15 48121708 48122008 -53258513 + AluY SINE Alu 1 298 -13 824 138 0 72 chr15 48122008 48122050 -53258471 - MER41A LTR ERV1 -111 443 400 1211 174 41 9 chr15 48122484 48122702 -53257819 - AluJb SINE Alu -3 309 85 813 183 0 0 chr15 48122857 48122988 -53257533 - FLAM_C SINE Alu -2 131 1 2417 93 0 3 chr15 48123029 48123341 -53257180 - AluSx SINE Alu -1 311 1 1369 202 62 35 chr15 48123350 48123785 -53256736 - HsTC2 DNA Tc2 0 1898 1276 272 203 39 148 chr15 48123872 48123907 -53256614 - MER5A DNA MER1_type -31 158 121 2411 86 0 0 chr15 48123907 48124211 -53256310 + AluSc SINE Alu 1 304 -5 272 203 39 148 chr15 48124211 48124303 -53256218 - MER5A DNA MER1_type -68 121 45 872 270 45 9 chr15 48124314 48124536 -53255985 + MIR SINE MIR 23 252 -10 32 26 0 0 chr15 48124543 48124582 -53255939 + AT_rich Low_complexity Low_complexity 1 39 0 1947 154 3 7 chr15 48124749 48125041 -53255480 + AluSx SINE Alu 1 291 -21 2406 84 0 7 chr15 48125043 48125352 -53255169 + AluSg SINE Alu 1 307 -3 2316 103 0 0 chr15 48125359 48125670 -53254851 + AluY SINE Alu 1 311 0 22 35 0 0 chr15 48125675 48125704 -53254817 + AT_rich Low_complexity Low_complexity 1 29 0 211 226 226 20 chr15 48126113 48126215 -53254306 - L2 LINE L2 -3 3269 3147 559 287 130 9 chr15 48127303 48127519 -53253002 + MIR SINE MIR 20 261 -1 2385 90 0 0 chr15 48127519 48127818 -53252703 + AluSx SINE Alu 1 299 -13 2163 130 0 0 chr15 48127840 48128139 -53252382 - AluSq SINE Alu -14 299 1 21 0 0 0 chr15 48128188 48128209 -53252312 + AT_rich Low_complexity Low_complexity 1 21 0 2086 121 29 13 chr15 48128234 48128541 -53251980 - AluSx SINE Alu 0 312 1 410 260 240 7 chr15 48129252 48129402 -53251119 - MIR SINE MIR -27 235 51 282 364 164 14 chr15 48129560 48129846 -53250675 + L3 LINE CR1 142 470 -1107 898 240 61 43 chr15 48130039 48130424 -53250097 - L1ME2 LINE L1 -7 6159 5741 475 288 212 17 chr15 48130613 48130905 -53249616 + L3 LINE CR1 548 896 -681 278 324 28 37 chr15 48130961 48131069 -53249452 + L3 LINE CR1 1041 1147 -430 1494 236 68 47 chr15 48131074 48131369 -53249152 - L2 LINE L2 0 3313 3025 1600 195 46 6 chr15 48131369 48131697 -53248824 + MER58B DNA MER1_type 1 341 0 1494 236 68 47 chr15 48131697 48131982 -53248539 - L2 LINE L2 -288 3025 2711 1190 208 57 59 chr15 48132000 48132130 -53248391 + Charlie4a DNA MER1_type 53 182 -1779 2243 96 0 7 chr15 48132130 48132423 -53248098 - AluSx SINE Alu -15 297 7 1190 208 57 59 chr15 48132423 48132554 -53247967 + Charlie4a DNA MER1_type 182 312 -1649 6822 40 9 75 chr15 48132554 48133579 -53246942 + L1PA6 LINE L1 5189 6151 -3 1190 208 57 59 chr15 48133579 48133754 -53246767 + Charlie4a DNA MER1_type 312 489 -19 248 150 0 0 chr15 48133846 48133886 -53246635 + MIR SINE MIR 223 262 0 390 251 59 87 chr15 48133937 48134224 -53246297 - L1ME4a LINE L1 -214 5907 5629 222 37 0 0 chr15 48134388 48134415 -53246106 + (CA)n Simple_repeat Simple_repeat 2 28 0 30 59 0 0 chr15 48134982 48135033 -53245488 + AT_rich Low_complexity Low_complexity 1 51 0 239 132 26 0 chr15 48135298 48135336 -53245185 + L2 LINE L2 1370 1408 -1906 1076 256 81 77 chr15 48135342 48135849 -53244672 + L2 LINE L2 2804 3312 -1 182 243 147 22 chr15 48136006 48136142 -53244379 - L2 LINE L2 -923 2391 2239 3476 104 24 4 chr15 48136697 48137199 -53243322 + MER41E LTR ERV1 1 512 0 273 57 0 0 chr15 48137218 48137253 -53243268 + (TA)n Simple_repeat Simple_repeat 2 36 0 246 193 23 45 chr15 48137257 48137345 -53243176 + L1MC4 LINE L1 6617 6702 -1340 235 286 226 0 chr15 48137523 48137607 -53242914 + L2 LINE L2 3154 3256 -16 1296 183 58 4 chr15 48137721 48137978 -53242543 - L1MC3 LINE L1 -842 6943 6673 875 163 132 36 chr15 48137983 48138234 -53242287 - MER33 DNA MER1_type -32 292 18 1324 234 98 44 chr15 48138250 48138402 -53242119 - L1ME4a LINE L1 -1103 5043 4901 1957 150 3 3 chr15 48138402 48138709 -53241812 + AluSx SINE Alu 1 307 -5 1324 234 98 44 chr15 48138709 48139152 -53241369 - L1ME4a LINE L1 -1245 4901 4410 2018 147 0 13 chr15 48139152 48139493 -53241028 - AluSx SINE Alu 0 312 1 1324 234 98 44 chr15 48139493 48139529 -53240992 - L1ME4a LINE L1 -1736 4410 4377 22 0 0 0 chr15 48139541 48139563 -53240958 + AT_rich Low_complexity Low_complexity 1 22 0 892 151 0 70 chr15 48139580 48139676 -53240845 + MER2 DNA MER2_type 2 80 -265 5885 58 30 16 chr15 48139676 48140445 -53240076 - LTR17 LTR ERV1 0 780 1 892 151 0 70 chr15 48140445 48140533 -53239988 + MER2 DNA MER2_type 80 173 -172 267 312 0 0 chr15 48140616 48140693 -53239828 + MER2 DNA MER2_type 269 345 0 339 306 11 94 chr15 48140697 48140782 -53239739 - L1ME4a LINE L1 -1811 4335 4245 2324 82 0 23 chr15 48140782 48141087 -53239434 + AluY SINE Alu 1 298 -13 339 306 11 94 chr15 48141087 48141129 -53239392 - L1ME4a LINE L1 -1901 4245 4201 3179 120 17 77 chr15 48141129 48141215 -53239306 - MER34B LTR ERV1 0 565 475 2147 108 0 14 chr15 48141215 48141525 -53238996 + AluSx SINE Alu 1 306 0 3179 120 17 77 chr15 48141525 48141761 -53238760 - MER34B LTR ERV1 -90 475 292 2353 74 7 3 chr15 48141761 48142057 -53238464 - AluY SINE Alu -14 297 1 3179 120 17 77 chr15 48142057 48142333 -53238188 - MER34B LTR ERV1 -273 292 1 339 306 11 94 chr15 48142333 48142384 -53238137 - L1ME4a LINE L1 -1945 4201 4171 333 264 28 0 chr15 48142431 48142537 -53237984 + L1ME LINE L1 5551 5659 -462 1877 153 10 3 chr15 48142715 48143022 -53237499 + AluJb SINE Alu 3 311 -1 243 111 0 0 chr15 48143101 48143137 -53237384 + MER51A LTR ERV1 1 36 -598 * 1334 140 149 69 chr15 48143135 48143485 -53237036 + MER51A LTR ERV1 257 634 0 191 225 0 0 chr15 48143569 48143609 -53236912 - MER5B DNA MER1_type -1 177 138 637 169 58 0 chr15 48143609 48143763 -53236758 - L1M4 LINE L1 -1055 5091 4929 433 197 95 7 chr15 48143762 48143909 -53236612 + L1M4 LINE L1 5091 5250 -896 * 941 112 0 0 chr15 48143984 48144127 -53236394 - L1MA5A LINE L1 -19 6278 6136 816 244 111 11 chr15 48144300 48144570 -53235951 - MER5C DNA MER1_type 0 324 28 195 186 0 0 chr15 48144738 48144781 -53235740 + (TA)n Simple_repeat Simple_repeat 2 44 0 3260 178 15 0 chr15 48144809 48145395 -53235126 - L1PB4 LINE L1 -14 6142 5548 334 259 99 23 chr15 48145911 48146042 -53234479 - L2 LINE L2 -212 3060 2920 756 235 0 32 chr15 48146052 48146255 -53234266 - L1PA16 LINE L1 -303 5863 5666 2074 124 10 0 chr15 48146255 48146416 -53234105 - AluSx SINE Alu -18 294 127 2290 97 0 7 chr15 48146416 48146714 -53233807 - AluSg SINE Alu -14 296 1 2074 124 10 0 chr15 48146714 48146843 -53233678 - AluSx SINE Alu -185 127 1 756 235 0 32 chr15 48146843 48146860 -53233661 - L1PA16 LINE L1 -500 5666 5650 1910 194 90 11 chr15 48146860 48147413 -53233108 - MER69B DNA AcHobo -99 1127 531 414 238 40 0 chr15 48147422 48147548 -53232973 - L1M4 LINE L1 -3866 2280 2150 1845 244 73 4 chr15 48147611 48148091 -53232430 - MER69B DNA AcHobo -707 519 7 2109 143 10 0 chr15 48148606 48148913 -53231608 - AluSx SINE Alu -2 310 1 638 256 120 47 chr15 48149081 48149758 -53230763 - L1MC5 LINE L1 -67 7894 7289 1323 163 7 58 chr15 48149762 48150057 -53230464 - L1MB7 LINE L1 -5 6179 5900 1242 137 0 9 chr15 48150223 48150442 -53230079 - L1MB3 LINE L1 -7 6176 5960 22 0 0 0 chr15 48150453 48150475 -53230046 + AT_rich Low_complexity Low_complexity 1 22 0 2043 128 3 3 chr15 48150484 48150781 -53229740 - AluSq SINE Alu -16 297 1 225 326 0 76 chr15 48151089 48151181 -53229340 + MER5B DNA MER1_type 8 92 -86 907 246 55 64 chr15 48151181 48151726 -53228795 - L1MC4 LINE L1 -565 7477 6938 1299 210 55 18 chr15 48151753 48152096 -53228425 - L1ME3 LINE L1 0 6162 5807 310 287 16 16 chr15 48152165 48152294 -53228227 - L1ME3 LINE L1 -515 5606 5478 2057 173 26 62 chr15 48152893 48153395 -53227126 + MLT1D LTR MaLR 22 505 0 423 284 163 5 chr15 48153395 48153610 -53226911 - L1ME3 LINE L1 -2305 5503 5255 1369 223 23 7 chr15 48153692 48154014 -53226507 - AluJo SINE Alu 0 312 1 1771 208 0 0 chr15 48154075 48154378 -53226143 + AluJb SINE Alu 1 303 -9 1595 184 4 4 chr15 48154475 48154747 -53225774 - AluJb SINE Alu -3 309 38 1629 179 71 22 chr15 48154787 48155151 -53225370 + MSTD LTR MaLR 9 390 -6 191 250 0 0 chr15 48155193 48155229 -53225292 - L2 LINE L2 -670 2644 2609 563 283 70 46 chr15 48155364 48155722 -53224799 - L2 LINE L2 -1 3312 2853 900 264 37 7 chr15 48155724 48156090 -53224431 + LTR33 LTR ERVL 6 439 -82 238 174 43 152 chr15 48156090 48156182 -53224339 - L2 LINE L2 -597 2717 2636 713 291 167 34 chr15 48156267 48156710 -53223811 - L2 LINE L2 0 3313 2812 312 245 14 82 chr15 48157237 48157384 -53223137 - L1MC5 LINE L1 -73 7888 7752 729 250 27 59 chr15 48157384 48157640 -53222881 - L2 LINE L2 -17 3296 3049 1342 244 28 19 chr15 48157644 48158032 -53222489 + LTR16A LTR ERVL 1 450 0 801 301 7 14 chr15 48158034 48158321 -53222200 - L2 LINE L2 -266 3047 2763 1862 155 14 0 chr15 48158869 48159174 -53221347 + AluJb SINE Alu 1 309 0 264 253 152 0 chr15 48160588 48160687 -53219834 - L2 LINE L2 -5 3267 3154 1530 188 44 0 chr15 48161105 48161273 -53219248 - AluJo SINE Alu -1 311 123 285 29 0 0 chr15 48161273 48161307 -53219214 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1530 188 44 0 chr15 48161307 48161436 -53219085 - AluJo SINE Alu -189 123 1 249 372 44 35 chr15 48162261 48162374 -53218147 - L2 LINE L2 -42 3230 3117 597 226 28 94 chr15 48162717 48162939 -53217582 + L1MC5 LINE L1 7560 7746 -215 1717 116 0 8 chr15 48162939 48163190 -53217331 - AluSc SINE Alu -1 308 60 597 226 28 94 chr15 48163190 48163361 -53217160 + L1MC5 LINE L1 7746 7927 -34 22 0 0 0 chr15 48163362 48163384 -53217137 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr15 48163643 48163674 -53216847 + AT_rich Low_complexity Low_complexity 1 31 0 328 268 98 16 chr15 48163862 48163985 -53216536 + L2 LINE L2 3177 3309 -4 251 241 84 48 chr15 48164482 48164565 -53215956 - MIR SINE MIR -59 203 118 25 0 0 0 chr15 48166836 48166861 -53213660 + AT_rich Low_complexity Low_complexity 1 25 0 391 318 95 0 chr15 48167320 48167468 -53213053 - MIR SINE MIR -66 196 35 756 331 79 26 chr15 48168255 48168751 -53211770 + L2 LINE L2 2174 2695 -619 1689 134 0 0 chr15 48168758 48169004 -53211517 + AluSx SINE Alu 61 306 -6 214 353 0 0 chr15 48169004 48169072 -53211449 + L2 LINE L2 2776 2843 -471 196 283 178 56 chr15 48169095 48169275 -53211246 + L2 LINE L2 3112 3313 0 258 373 109 0 chr15 48170310 48170420 -53210101 + L2 LINE L2 3151 3272 0 336 24 0 0 chr15 48171085 48171126 -53209395 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 409 38 0 0 chr15 48171578 48171631 -53208890 + MADE1 DNA Mariner 1 53 -27 236 386 75 35 chr15 48172936 48173190 -53207331 - L2 LINE L2 -77 3195 2932 300 188 0 0 chr15 48173771 48173835 -53206686 + (TG)n Simple_repeat Simple_repeat 2 65 0 1669 155 39 14 chr15 48173916 48174193 -53206328 + AluJo SINE Alu 1 287 -25 180 0 0 0 chr15 48174193 48174213 -53206308 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1053 305 120 41 chr15 48175245 48176078 -53204443 - L2 LINE L2 -9 3263 2364 308 319 35 18 chr15 48176977 48177090 -53203431 - L2 LINE L2 0 3272 3158 2769 115 15 58 chr15 48177114 48177583 -53202938 - L1MA9 LINE L1 0 6312 5864 189 0 0 0 chr15 48177829 48177850 -53202671 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 24 0 0 0 chr15 48178542 48178566 -53201955 + AT_rich Low_complexity Low_complexity 1 24 0 2411 86 0 0 chr15 48179152 48179456 -53201065 + AluSx SINE Alu 1 304 -8 811 200 79 30 chr15 48180015 48180180 -53200341 + FAM SINE Alu 1 173 -2 1917 158 0 16 chr15 48180671 48180987 -53199534 + AluSx SINE Alu 1 311 -1 2009 139 81 0 chr15 48180989 48181333 -53199188 - MSTA LTR MaLR -56 372 1 284 274 125 53 chr15 48181446 48181536 -53198985 - L1ME4a LINE L1 -60 6061 5979 297 0 0 0 chr15 48181536 48181569 -53198952 + (TG)n Simple_repeat Simple_repeat 2 34 0 284 274 125 53 chr15 48181569 48181686 -53198835 - L1ME4a LINE L1 -142 5979 5839 * 364 264 51 76 chr15 48181677 48181808 -53198713 + L1ME4a LINE L1 5588 5714 -407 1043 210 35 0 chr15 48181808 48182008 -53198513 - MER3 DNA MER1_type -2 207 1 364 264 51 76 chr15 48182008 48182073 -53198448 + L1ME4a LINE L1 5714 5779 -342 196 140 60 0 chr15 48182194 48182244 -53198277 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 212 264 68 135 chr15 48182775 48182938 -53197583 + L3 LINE CR1 1291 1442 -135 723 284 96 39 chr15 48182941 48183275 -53197246 - MLT1K LTR MaLR -31 557 205 319 258 129 61 chr15 48183436 48183568 -53196953 + L3 LINE CR1 1434 1574 -3 306 222 63 32 chr15 48184487 48184613 -53195908 + L1ME4a LINE L1 5773 5902 -219 521 293 50 39 chr15 48185197 48185247 -53195274 + MIR3 SINE MIR 2 50 -158 180 0 0 0 chr15 48185247 48185267 -53195254 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 521 293 50 39 chr15 48185267 48185397 -53195124 + MIR3 SINE MIR 50 184 -24 1235 185 143 0 chr15 48186045 48186283 -53194238 + AluJb SINE Alu 1 272 -40 1782 52 5 0 chr15 48186285 48186495 -53194026 + L1PA5 LINE L1 5939 6149 -5 180 0 0 0 chr15 48186656 48186676 -53193845 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1999 112 4 4 chr15 48186683 48186960 -53193561 - AluSx SINE Alu -35 277 1 356 162 216 14 chr15 48187282 48187356 -53193165 + AluJb SINE Alu 195 283 -19 463 282 108 33 chr15 48187880 48188093 -53192428 - L1MC4 LINE L1 -1042 7000 6772 440 281 72 26 chr15 48188373 48188526 -53191995 + MER117 DNA MER1_type 24 183 -14 492 99 0 0 chr15 48188612 48188683 -53191838 + (TA)n Simple_repeat Simple_repeat 1 71 0 4038 141 61 13 chr15 48188692 48189164 -53191357 - L1MB3 LINE L1 -1 6182 5663 300 53 0 0 chr15 48189164 48189202 -53191319 + (TA)n Simple_repeat Simple_repeat 2 39 0 4038 141 61 13 chr15 48189202 48189433 -53191088 - L1MB3 LINE L1 -520 5663 5445 1985 147 0 13 chr15 48189923 48190229 -53190292 - AluSx SINE Alu -10 302 1 240 35 0 0 chr15 48191082 48191111 -53189410 + (TAA)n Simple_repeat Simple_repeat 1 29 0 183 262 66 0 chr15 48191612 48191673 -53188848 + MIR3 SINE MIR 137 201 -7 483 264 43 7 chr15 48191981 48192121 -53188400 - MIR3 SINE MIR -60 148 4 841 232 17 11 chr15 48192797 48192974 -53187547 - MER5B DNA MER1_type 0 178 1 2145 90 0 13 chr15 48192978 48193277 -53187244 + AluY SINE Alu 2 296 -15 568 194 35 56 chr15 48193384 48193407 -53187114 + MIR SINE MIR 51 73 -189 2934 98 0 8 chr15 48193407 48193785 -53186736 - THE1C LTR MaLR 0 375 1 568 194 35 56 chr15 48193785 48193905 -53186616 + MIR SINE MIR 73 191 -71 360 0 0 0 chr15 48194066 48194106 -53186415 + (TA)n Simple_repeat Simple_repeat 2 41 0 2604 40 0 49 chr15 48194111 48194438 -53186083 - AluY SINE Alu 0 311 1 390 232 212 50 chr15 48194540 48194738 -53185783 - L2 LINE L2 0 3313 3084 1753 167 3 33 chr15 48194993 48195298 -53185223 - AluJb SINE Alu -16 296 1 949 262 93 4 chr15 48195316 48195595 -53184926 - LTR16C LTR ERVL 0 491 188 620 171 8 43 chr15 48196048 48196165 -53184356 - AluJo SINE Alu -178 134 22 790 257 67 9 chr15 48196406 48196616 -53183905 + MIR SINE MIR 25 246 -16 370 281 56 9 chr15 48196903 48197034 -53183487 + MIR SINE MIR 17 154 -73 443 204 150 20 chr15 48198027 48198174 -53182347 - L1MC5 LINE L1 -32 7929 7764 811 220 11 11 chr15 48198947 48199124 -53181397 + MER5B DNA MER1_type 2 178 0 435 163 380 0 chr15 48199286 48199415 -53181106 - MER104 DNA MER2_type 0 180 3 203 211 14 84 chr15 48200175 48200246 -53180275 - L3 LINE CR1 -1377 200 135 2247 92 0 0 chr15 48200264 48200558 -53179963 - AluY SINE Alu -16 295 2 246 152 0 43 chr15 48200562 48200608 -53179913 + MER5B DNA MER1_type 1 44 -134 275 221 242 0 chr15 48200912 48201007 -53179514 + MIR SINE MIR 53 170 -92 4264 156 38 79 chr15 48201029 48201346 -53179175 - MER21A LTR ERV1 -30 901 573 1991 128 9 41 chr15 48201346 48201490 -53179031 + AluJo SINE Alu 1 148 -164 2303 98 3 0 chr15 48201490 48201786 -53178735 + AluY SINE Alu 1 297 -14 1991 128 9 41 chr15 48201786 48201960 -53178561 + AluJo SINE Alu 148 309 -3 4264 156 38 79 chr15 48201960 48202568 -53177953 - MER21A LTR ERV1 -358 573 14 402 74 0 0 chr15 48202587 48202641 -53177880 + (CAGA)n Simple_repeat Simple_repeat 3 56 0 262 239 99 0 chr15 48203307 48203378 -53177143 + MIR SINE MIR 35 112 -96 * 474 218 30 0 chr15 48203375 48203476 -53177045 + MER5A DNA MER1_type 9 112 -77 271 240 21 52 chr15 48203536 48203632 -53176889 + MIR SINE MIR 114 206 -56 259 211 0 0 chr15 48205027 48205079 -53175442 + LTR30 LTR ERV1 1 52 -670 1062 106 15 164 chr15 48205079 48205353 -53175168 + LTR12 LTR ERV1 53 285 -429 247 227 57 23 chr15 48205354 48205442 -53175079 + LTR30 LTR ERV1 553 643 -79 651 141 10 0 chr15 48205444 48205543 -53174978 + LTR12 LTR ERV1 615 714 0 198 313 153 56 chr15 48206048 48206192 -53174329 - MIR3 SINE MIR -21 187 30 25 75 0 0 chr15 48208288 48208341 -53172180 + AT_rich Low_complexity Low_complexity 1 53 0 506 183 0 8 chr15 48208996 48209122 -53171399 + GA-rich Low_complexity Low_complexity 2 126 0 345 223 107 19 chr15 48209958 48210061 -53170460 + MIR SINE MIR 81 192 -70 251 239 14 0 chr15 48210089 48210160 -53170361 + (TA)n Simple_repeat Simple_repeat 2 73 0 277 294 111 32 chr15 48210205 48210331 -53170190 - MIR SINE MIR -103 159 24 249 307 13 0 chr15 48210810 48210885 -53169636 + MLT1K LTR MaLR 95 170 -418 415 186 97 97 chr15 48211081 48211226 -53169295 + MLT1K LTR MaLR 444 588 0 279 114 0 0 chr15 48211444 48211488 -53169033 + (TGGA)n Simple_repeat Simple_repeat 2 45 0 356 298 0 26 chr15 48211585 48211699 -53168822 + LTR33 LTR ERVL 23 133 -388 854 214 136 8 chr15 48211729 48211986 -53168535 + LTR33 LTR ERVL 232 521 0 547 253 180 64 chr15 48212363 48212548 -53167973 + MIR SINE MIR 3 165 -97 1551 128 66 29 chr15 48212548 48212791 -53167730 + AluSg SINE Alu 1 252 -58 333 0 0 0 chr15 48212797 48212834 -53167687 + (CA)n Simple_repeat Simple_repeat 2 38 0 547 253 180 64 chr15 48212834 48212874 -53167647 + MIR SINE MIR 169 262 0 2310 104 0 0 chr15 48212988 48213285 -53167236 + AluSx SINE Alu 1 297 -15 458 233 55 49 chr15 48213615 48213778 -53166743 - L2 LINE L2 -497 2817 2654 2255 117 0 0 chr15 48213849 48214158 -53166363 - AluY SINE Alu -2 309 1 1235 153 0 38 chr15 48214626 48214835 -53165686 + AluJb SINE Alu 1 201 -111 2204 117 0 0 chr15 48215407 48215706 -53164815 - AluY SINE Alu -12 299 1 1802 158 0 27 chr15 48216174 48216472 -53164049 + AluJb SINE Alu 1 290 -22 22 0 0 0 chr15 48216472 48216494 -53164027 + AT_rich Low_complexity Low_complexity 1 22 0 885 242 47 19 chr15 48216930 48217206 -53163315 + L1MB8 LINE L1 5889 6178 0 1384 246 123 24 chr15 48218722 48219364 -53161157 + L2 LINE L2 2537 3252 -61 457 281 91 63 chr15 48219396 48219561 -53160960 - L2 LINE L2 -170 3143 2967 1024 178 17 28 chr15 48219561 48219741 -53160780 - MER45A DNA AcHobo 0 178 1 457 281 91 63 chr15 48219741 48219828 -53160693 - L2 LINE L2 -346 2967 2884 2171 130 0 0 chr15 48219851 48220159 -53160362 + AluSg SINE Alu 1 308 -2 1928 132 7 3 chr15 48220847 48221135 -53159386 + AluJo SINE Alu 7 295 -17 1178 186 101 0 chr15 48221283 48221482 -53159039 + MER20 DNA MER1_type 1 219 0 374 310 76 0 chr15 48222010 48222168 -53158353 + MIR SINE MIR 90 259 -3 210 91 0 0 chr15 48223195 48223228 -53157293 + (CCCCCA)n Simple_repeat Simple_repeat 5 37 0 23 0 0 0 chr15 48223267 48223290 -53157231 + GC_rich Low_complexity Low_complexity 1 23 0 34 42 0 0 chr15 48223486 48223534 -53156987 + GC_rich Low_complexity Low_complexity 1 48 0 207 175 0 0 chr15 48223618 48223658 -53156863 + CT-rich Low_complexity Low_complexity 2 41 0 185 295 63 42 chr15 48225188 48225283 -53155238 + L2 LINE L2 3129 3225 -47 21 36 0 0 chr15 48225284 48225312 -53155209 + AT_rich Low_complexity Low_complexity 1 28 0 189 274 78 0 chr15 48225481 48225532 -53154989 - L2 LINE L2 -80 3192 3138 1454 184 41 0 chr15 48225603 48225870 -53154651 + AluJo SINE Alu 1 278 -34 2025 143 3 3 chr15 48225899 48226206 -53154315 - AluSx SINE Alu -5 307 1 905 285 87 76 chr15 48226343 48227418 -53153103 + L1M4 LINE L1 4029 5114 -1032 380 174 0 0 chr15 48227415 48227484 -53153037 - L1MB8 LINE L1 -21 6157 6089 * 6699 217 24 51 chr15 48227459 48227504 -53153017 - L1M4 LINE L1 -807 5339 5294 1670 146 25 77 chr15 48227504 48227586 -53152935 - L1MB4 LINE L1 -6 6174 6089 1944 142 3 0 chr15 48227586 48227874 -53152647 + AluSx SINE Alu 1 289 -23 208 53 53 0 chr15 48227884 48227922 -53152599 + (TA)n Simple_repeat Simple_repeat 2 41 0 1670 146 25 77 chr15 48227922 48227987 -53152534 - L1MB4 LINE L1 -100 6080 6013 2012 102 0 18 chr15 48227987 48228261 -53152260 - AluSx SINE Alu -17 295 27 1670 146 25 77 chr15 48228261 48228465 -53152056 - L1MB4 LINE L1 -167 6013 5830 6699 217 24 51 chr15 48228465 48228624 -53151897 - L1M4 LINE L1 -852 5294 5132 1551 194 0 14 chr15 48228624 48228913 -53151608 + AluJo SINE Alu 2 286 -26 222 37 0 0 chr15 48228913 48228940 -53151581 + (CATA)n Simple_repeat Simple_repeat 2 28 0 6699 217 24 51 chr15 48228940 48229099 -53151422 - L1M4 LINE L1 -1013 5133 4971 739 205 0 8 chr15 48229099 48229221 -53151300 - FLAM_A SINE Alu -11 122 2 6699 217 24 51 chr15 48229221 48230719 -53149802 - L1M4 LINE L1 -1175 4971 3525 3392 225 30 6 chr15 48230724 48231568 -53148953 + L1MB7 LINE L1 3148 4011 -2135 5021 167 25 16 chr15 48231574 48231595 -53148926 + L1MB7 LINE L1 5180 5199 -985 194 0 39 0 chr15 48231595 48231621 -53148900 + (CA)n Simple_repeat Simple_repeat 2 28 0 5021 167 25 16 chr15 48231621 48232585 -53147936 + L1MB7 LINE L1 5199 6178 -6 1248 176 76 113 chr15 48232595 48232847 -53147674 - L1MC5 LINE L1 -67 7894 7634 1986 115 0 66 chr15 48232847 48233180 -53147341 + AluSx SINE Alu 3 315 0 2114 88 4 0 chr15 48233180 48233443 -53147078 + AluSp SINE Alu 24 287 -26 1248 176 76 113 chr15 48233443 48233728 -53146793 - L1MC5 LINE L1 -325 7636 7374 426 267 74 78 chr15 48233846 48233938 -53146583 - MIR SINE MIR -46 216 125 2160 94 27 3 chr15 48233938 48234236 -53146285 + AluSc SINE Alu 1 305 -4 426 267 74 78 chr15 48234236 48234360 -53146161 - MIR SINE MIR -137 125 1 657 247 18 6 chr15 48234461 48234631 -53145890 - MLT1L LTR MaLR -5 610 439 237 135 0 0 chr15 48234634 48234671 -53145850 - MLT1L LTR MaLR -387 228 192 288 266 0 0 chr15 48234957 48235021 -53145500 + MIR3 SINE MIR 121 184 -24 197 250 54 65 chr15 48236217 48236309 -53144212 + MIR SINE MIR 110 200 -62 329 296 17 108 chr15 48238033 48238330 -53142191 + L1M2 LINE L1 673 942 -5907 21 36 0 0 chr15 48238459 48238487 -53142034 + GC_rich Low_complexity Low_complexity 1 28 0 384 237 163 0 chr15 48239090 48239225 -53141296 + MIR3 SINE MIR 45 201 -7 630 293 117 3 chr15 48239683 48239983 -53140538 + L1MC4 LINE L1 7140 7473 -569 567 286 63 49 chr15 48240010 48240437 -53140084 + L1MC4 LINE L1 7595 8027 -15 247 256 77 0 chr15 48241248 48241326 -53139195 + MER103 DNA DNA 22 105 -61 278 327 158 5 chr15 48242931 48243133 -53137388 - MIR SINE MIR -14 248 16 2417 79 0 0 chr15 48243659 48243964 -53136557 + AluSx SINE Alu 1 305 -7 1087 174 0 71 chr15 48244409 48244648 -53135873 + AluJo SINE Alu 86 309 0 912 294 168 34 chr15 48245075 48246118 -53134403 - L2 LINE L2 -3 3269 2040 264 264 0 0 chr15 48246126 48246179 -53134342 + MIR3 SINE MIR 149 201 -7 287 256 122 29 chr15 48246265 48246437 -53134084 - LTR33 LTR ERVL 0 521 334 463 205 94 0 chr15 48246545 48246662 -53133859 - LTR33 LTR ERVL -392 129 2 2069 187 85 35 chr15 48246699 48247067 -53133454 - MLT1D LTR MaLR 0 505 106 2259 113 0 3 chr15 48247067 48247368 -53133153 + AluSq SINE Alu 1 300 -13 2069 187 85 35 chr15 48247368 48247480 -53133041 - MLT1D LTR MaLR -399 106 1 1856 146 34 24 chr15 48247989 48248284 -53132237 + AluJo SINE Alu 1 298 -14 491 173 54 113 chr15 48248294 48248410 -53132111 - HsTC2 DNA Tc2 -2 1896 1775 2420 70 0 7 chr15 48248410 48248708 -53131813 + AluY SINE Alu 1 296 -15 491 173 54 113 chr15 48248708 48248719 -53131802 - HsTC2 DNA Tc2 -123 1775 1765 1508 186 7 17 chr15 48248719 48249010 -53131511 + AluJo SINE Alu 1 288 -24 491 173 54 113 chr15 48249010 48249066 -53131455 - HsTC2 DNA Tc2 -133 1765 1723 1725 200 35 52 chr15 48249071 48249473 -53131048 - L1ME1 LINE L1 0 6166 5772 1847 158 16 26 chr15 48249473 48249784 -53130737 - AluJo SINE Alu -4 308 1 1725 200 35 52 chr15 48249784 48249861 -53130660 - L1ME1 LINE L1 -394 5772 5695 1413 237 101 126 chr15 48249861 48250457 -53130064 - HsTC2 DNA Tc2 -163 1735 1 188 300 133 0 chr15 48250460 48250550 -53129971 - MIR3 SINE MIR -54 154 53 929 146 0 141 chr15 48250656 48250869 -53129652 + AluJb SINE Alu 104 286 -26 2095 104 14 0 chr15 48251561 48251841 -53128680 - AluSx SINE Alu -20 292 9 735 184 31 31 chr15 48252298 48252383 -53128138 - L1ME1 LINE L1 -309 5857 5770 1847 158 16 26 chr15 48252383 48252694 -53127827 - AluJo SINE Alu -4 308 1 735 184 31 31 chr15 48252694 48252771 -53127750 - L1ME1 LINE L1 -395 5771 5695 1592 228 103 123 chr15 48252771 48253364 -53127157 - HsTC2 DNA Tc2 -163 1735 1 217 300 133 0 chr15 48253367 48253457 -53127064 - MIR3 SINE MIR -54 154 53 929 146 0 141 chr15 48253563 48253776 -53126745 + AluJo SINE Alu 104 286 -26 185 323 93 57 chr15 48253896 48254249 -53126272 + L2 LINE L2 2611 2976 -338 2243 94 14 0 chr15 48254468 48254756 -53125765 - AluSx SINE Alu -20 292 1 342 348 67 0 chr15 48254807 48254942 -53125579 + L2 LINE L2 3118 3261 -11 485 221 103 69 chr15 48255460 48255664 -53124857 + MIR SINE MIR 2 212 -50 218 269 104 0 chr15 48256399 48256466 -53124055 - MIR SINE MIR -142 120 47 2172 122 7 0 chr15 48256487 48256781 -53123740 - AluSx SINE Alu -16 296 1 706 226 53 11 chr15 48258376 48258566 -53121955 + L1MC1 LINE L1 6066 6263 -70 319 262 107 16 chr15 48258834 48258956 -53121565 - L2 LINE L2 -2 3270 3138 239 243 216 43 chr15 48259165 48259208 -53121313 + L2 LINE L2 2678 2712 -602 1911 154 13 0 chr15 48259208 48259506 -53121015 + AluJb SINE Alu 1 302 -10 239 243 216 43 chr15 48259506 48259717 -53120804 + L2 LINE L2 2712 2976 -338 905 226 6 0 chr15 48260114 48260278 -53120243 + FRAM SINE Alu 1 165 -1 936 196 0 0 chr15 48260983 48261146 -53119375 + FRAM SINE Alu 10 172 -4 1499 234 123 10 chr15 48262322 48262888 -53117633 - MER115 DNA AcHobo -4 689 1 24 0 0 0 chr15 48263734 48263758 -53116763 + AT_rich Low_complexity Low_complexity 1 24 0 2298 96 0 19 chr15 48265020 48265333 -53115188 - AluSc SINE Alu -2 307 1 270 164 55 0 chr15 48265368 48265423 -53115098 + MIR SINE MIR 201 258 -4 * 480 217 116 32 chr15 48265385 48265582 -53114939 - MIR SINE MIR -51 211 3 291 162 95 27 chr15 48266002 48266076 -53114445 - MIR3 SINE MIR -9 199 121 336 233 144 0 chr15 48267052 48267142 -53113379 - L2 LINE L2 0 3272 3170 1274 20 0 0 chr15 48267142 48267289 -53113232 + L1PA3 LINE L1 3678 3824 -2322 6153 24 1 0 chr15 48267289 48267956 -53112565 + L1PA3 LINE L1 5484 6154 -1 22 0 0 0 chr15 48267956 48267978 -53112543 + AT_rich Low_complexity Low_complexity 1 22 0 1102 186 0 0 chr15 48268101 48268284 -53112237 - AluSg/x SINE Alu -1 311 129 21 0 0 0 chr15 48268365 48268386 -53112135 + AT_rich Low_complexity Low_complexity 1 21 0 2670 100 3 3 chr15 48268575 48268934 -53111587 + L1PA3 LINE L1 5796 6154 -1 22 0 0 0 chr15 48268934 48268956 -53111565 + AT_rich Low_complexity Low_complexity 1 22 0 1460 93 0 0 chr15 48269080 48269262 -53111259 - AluSg/x SINE Alu -2 308 127 1286 166 5 23 chr15 48269398 48269615 -53110906 - AluJo SINE Alu -18 294 82 2116 72 0 11 chr15 48269821 48270084 -53110437 - AluY SINE Alu -17 294 35 1685 197 0 3 chr15 48270122 48270417 -53110104 - AluJo SINE Alu -18 294 1 828 282 66 43 chr15 48270460 48270807 -53109714 - L1ME LINE L1 -334 5787 5433 1326 161 113 26 chr15 48271824 48272234 -53108287 - MLT1F LTR MaLR -3 539 69 243 0 0 0 chr15 48272239 48272266 -53108255 + (GA)n Simple_repeat Simple_repeat 1 27 0 198 0 0 0 chr15 48272265 48272287 -53108234 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 357 200 0 0 chr15 48272342 48272422 -53108099 - MIR SINE MIR 0 262 183 309 363 102 64 chr15 48272534 48272895 -53107626 - L2 LINE L2 -48 3224 2850 2301 98 7 0 chr15 48273645 48273940 -53106581 + AluSg SINE Alu 1 297 -13 827 196 0 0 chr15 48274049 48274187 -53106334 + FRAM SINE Alu 1 137 -39 432 0 0 0 chr15 48274188 48274236 -53106285 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 872 272 12 12 chr15 48274399 48274645 -53105876 - MIR SINE MIR -14 248 3 257 276 17 0 chr15 48274864 48274922 -53105599 + L2 LINE L2 3255 3313 0 234 317 0 0 chr15 48275443 48275503 -53105018 - L2 LINE L2 -5 3267 3208 2661 40 0 0 chr15 48275573 48275876 -53104645 + AluY SINE Alu 1 303 -8 3150 110 75 20 chr15 48275876 48276384 -53104137 + L1MA4 LINE L1 5758 6293 -7 28 48 0 0 chr15 48276385 48276427 -53104094 + AT_rich Low_complexity Low_complexity 1 42 0 214 195 0 0 chr15 48276474 48276515 -53104006 + (TA)n Simple_repeat Simple_repeat 1 41 0 361 293 50 0 chr15 48276996 48277095 -53103426 - MIR SINE MIR -119 143 40 36795 96 12 16 chr15 48277303 48283470 -53097051 + L1PA7 LINE L1 11 6153 -1 350 207 35 0 chr15 48283486 48283573 -53096948 - MER33 DNA MER1_type -22 341 252 401 153 0 0 chr15 48283573 48283632 -53096889 - Tigger5 DNA MER2_type -1 2322 2264 247 184 0 0 chr15 48283633 48283671 -53096850 + Tigger5 DNA MER2_type 2283 2320 -3 * 464 177 0 0 chr15 48283671 48283749 -53096772 - Tigger5 DNA MER2_type -2245 78 1 903 163 130 3 chr15 48283749 48283977 -53096544 - MER33 DNA MER1_type -255 69 1 1356 174 18 14 chr15 48284499 48284717 -53095804 + MER20 DNA MER1_type 1 219 0 861 107 8 0 chr15 48284889 48285010 -53095511 + FLAM_C SINE Alu 13 134 -9 649 185 134 25 chr15 48285010 48285167 -53095354 - MER5B DNA MER1_type -1 177 4 227 212 106 59 chr15 48285182 48285352 -53095169 - HAL1b LINE L1 -415 933 756 266 222 32 0 chr15 48285469 48285532 -53094989 - HAL1 LINE L1 -1016 1474 1410 1195 146 3 90 chr15 48285677 48285999 -53094522 + AluSx SINE Alu 6 299 -13 404 280 87 43 chr15 48286000 48286120 -53094401 - L1MEd LINE L1 -1130 1360 1247 567 40 0 0 chr15 48286120 48286194 -53094327 + (TTTC)n Simple_repeat Simple_repeat 4 77 0 404 280 87 43 chr15 48286194 48286426 -53094095 - L1MEd LINE L1 -1243 1247 908 186 133 0 0 chr15 48286472 48286502 -53094019 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 450 236 108 19 chr15 48286744 48286901 -53093620 + L2 LINE L2 3109 3279 -34 3666 145 71 9 chr15 48287064 48287698 -53092823 - MER44D DNA MER2_type -1 704 32 861 141 96 34 chr15 48290546 48290723 -53089798 - MER53 DNA DNA -1 188 1 1875 140 0 4 chr15 48290827 48291105 -53089416 + AluSx SINE Alu 21 297 -15 1682 194 3 7 chr15 48291233 48291561 -53088960 - AluJb SINE Alu 0 312 1 753 231 7 7 chr15 48291612 48291755 -53088766 + FRAM SINE Alu 1 143 -33 249 33 0 0 chr15 48291763 48291793 -53088728 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 423 0 0 0 chr15 48291792 48291839 -53088682 + (CA)n Simple_repeat Simple_repeat 1 47 0 243 0 0 0 chr15 48291843 48291870 -53088651 + (TC)n Simple_repeat Simple_repeat 2 28 0 255 189 0 19 chr15 48291995 48292048 -53088473 + MIR3 SINE MIR 119 170 -38 795 109 0 0 chr15 48292385 48292486 -53088035 + FLAM_A SINE Alu 20 120 -22 33 43 0 0 chr15 48292486 48292533 -53087988 + AT_rich Low_complexity Low_complexity 1 47 0 237 257 86 0 chr15 48293568 48293638 -53086883 + L1MC4a LINE L1 4737 4812 -1334 243 224 19 109 chr15 48293658 48293724 -53086797 + L1P LINE L1 4906 4976 -1170 2383 103 0 0 chr15 48293724 48294036 -53086485 - AluSq SINE Alu -1 312 1 243 224 19 109 chr15 48294036 48294125 -53086396 + L1P LINE L1 4976 5047 -1099 632 315 88 55 chr15 48294335 48294941 -53085580 + L1MC4a LINE L1 5307 5932 -1876 2100 109 3 7 chr15 48295110 48295428 -53085093 - AluSg SINE Alu 0 317 1 2132 120 0 3 chr15 48295516 48295815 -53084706 - AluSx SINE Alu -14 298 1 1396 100 43 5 chr15 48296136 48296346 -53084175 + L1MA3 LINE L1 6087 6304 -1 603 143 109 0 chr15 48296367 48296486 -53084035 + L1MB4 LINE L1 6045 6176 -4 22 0 0 0 chr15 48296513 48296535 -53083986 + AT_rich Low_complexity Low_complexity 1 22 0 230 146 83 21 chr15 48297766 48297814 -53082707 + L1P3 LINE L1 730 780 -5095 1716 210 80 34 chr15 48300737 48301152 -53079369 - MER63B DNA MER1_type -2 434 1 180 111 0 0 chr15 48301300 48301327 -53079194 + (T)n Simple_repeat Simple_repeat 1 27 0 1597 181 10 10 chr15 48301686 48301984 -53078537 + AluSg SINE Alu 11 308 -2 1938 132 7 3 chr15 48302672 48302961 -53077560 + AluJo SINE Alu 7 296 -16 899 216 108 5 chr15 48303109 48303294 -53077227 + MER20 DNA MER1_type 1 204 -15 5021 168 13 16 chr15 48306118 48307088 -53073433 + L1MB7 LINE L1 5208 6178 -6 659 194 71 68 chr15 48307098 48307350 -53073171 - L1MC5 LINE L1 -67 7894 7642 1868 122 0 72 chr15 48307350 48307654 -53072867 + AluSx SINE Alu 3 284 -28 186 71 0 0 chr15 48307657 48307685 -53072836 + (CAA)n Simple_repeat Simple_repeat 1 28 0 1901 108 8 0 chr15 48307685 48307944 -53072577 + AluSp SINE Alu 24 284 -29 258 247 32 21 chr15 48308138 48308231 -53072290 - L1MC5 LINE L1 -491 7470 7377 2229 121 0 0 chr15 48309149 48309447 -53071074 + AluSg SINE Alu 1 298 -12 827 196 0 0 chr15 48309556 48309694 -53070827 + FRAM SINE Alu 1 137 -39 432 0 0 0 chr15 48309695 48309743 -53070778 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 872 272 12 12 chr15 48309906 48310152 -53070369 - MIR SINE MIR -14 248 3 257 276 17 0 chr15 48310371 48310429 -53070092 + L2 LINE L2 3255 3313 0 234 317 0 0 chr15 48310949 48311009 -53069512 - L2 LINE L2 -5 3267 3208 1954 23 0 0 chr15 48311079 48311295 -53069226 + AluYb8 SINE Alu 1 216 -102 21 0 0 0 chr15 48311561 48311582 -53068939 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 48311589 48311610 -53068911 + AT_rich Low_complexity Low_complexity 1 21 0 876 151 6 19 chr15 48311803 48311962 -53068559 - AluSx SINE Alu -155 157 1 1396 100 43 5 chr15 48312283 48312493 -53068028 + L1MA3 LINE L1 6087 6304 -1 603 143 109 0 chr15 48312514 48312633 -53067888 + L1MB4 LINE L1 6045 6176 -4 22 0 0 0 chr15 48312660 48312682 -53067839 + AT_rich Low_complexity Low_complexity 1 22 0 2453 62 0 7 chr15 48314453 48314757 -53065764 - AluY SINE Alu -9 302 1 202 167 0 69 chr15 48314779 48314851 -53065670 + (CACCC)n Simple_repeat Simple_repeat 2 68 0 290 224 0 72 chr15 48315304 48315429 -53065092 - AluSc SINE Alu -165 134 19 1386 145 5 10 chr15 48315429 48315636 -53064885 - AluSx SINE Alu -105 207 2 500 267 48 29 chr15 48315694 48315900 -53064621 - L1MC5 LINE L1 -21 7940 7731 283 284 92 35 chr15 48316133 48316274 -53064247 - HAL1 LINE L1 -2358 149 1 872 250 13 22 chr15 48316603 48316827 -53063694 + AluJo SINE Alu 87 308 -4 488 189 7 88 chr15 48317247 48317395 -53063126 + MER96B DNA MER1_type? 1 136 -281 251 329 51 15 chr15 48317923 48318060 -53062461 + L2 LINE L2 2910 3051 -221 811 161 0 8 chr15 48318947 48319065 -53061456 - AluJo SINE Alu -70 242 126 325 265 147 0 chr15 48319345 48319447 -53061074 - L2 LINE L2 -17 3296 3180 667 245 21 42 chr15 48319738 48319930 -53060591 - MIR SINE MIR -2 260 73 472 296 190 14 chr15 48320327 48320543 -53059978 + MIR SINE MIR 3 256 -6 2166 108 0 26 chr15 48321111 48321418 -53059103 - AluSx SINE Alu -13 299 1 396 219 168 15 chr15 48324516 48324653 -53055868 + MER117 DNA MER1_type 1 158 -39 1740 160 41 3 chr15 48324819 48325112 -53055409 + AluJo SINE Alu 1 304 -8 1603 164 0 53 chr15 48325377 48325658 -53054863 + AluJb SINE Alu 1 266 -46 270 0 0 0 chr15 48325661 48325691 -53054830 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 636 189 85 0 chr15 48326983 48327089 -53053432 + FLAM_C SINE Alu 4 118 -15 2190 175 34 3 chr15 48327202 48327556 -53052965 + MLT1A1 LTR MaLR 1 365 0 193 198 116 70 chr15 48327616 48327702 -53052819 - L3 LINE CR1 -25 1552 1463 295 146 10 15 chr15 48328151 48328214 -53052307 - MER110A LTR ERV1 -4 464 383 4567 230 103 39 chr15 48328383 48329002 -53051519 - L2 LINE L2 -681 2633 2055 2153 113 0 10 chr15 48329002 48329295 -53051226 + AluSx SINE Alu 11 300 -12 4567 230 103 39 chr15 48329295 48330075 -53050446 - L2 LINE L2 -1259 2055 1130 1989 100 37 4 chr15 48330075 48330369 -53050152 - AluSg SINE Alu 0 303 1 4567 230 103 39 chr15 48330369 48330455 -53050066 - L2 LINE L2 -2184 1130 1051 322 228 89 49 chr15 48330457 48330580 -53049941 - L2 LINE L2 -2485 829 702 387 306 127 6 chr15 48331073 48331230 -53049291 + L2 LINE L2 2449 2624 -690 516 257 127 40 chr15 48331263 48331539 -53048982 + L2 LINE L2 3009 3308 -5 249 310 0 60 chr15 48332098 48332198 -53048323 - L2 LINE L2 -41 3231 3138 1857 149 10 7 chr15 48332540 48332842 -53047679 - AluJo SINE Alu -7 305 3 770 145 145 21 chr15 48333009 48333154 -53047367 + FRAM SINE Alu 4 166 -10 193 340 21 21 chr15 48335965 48336062 -53044459 + MIR SINE MIR 20 116 -92 567 271 44 17 chr15 48336077 48336258 -53044263 + MIR SINE MIR 11 196 -66 333 242 57 81 chr15 48336903 48337027 -53043494 + L2 LINE L2 3144 3264 -8 513 276 32 0 chr15 48337113 48337236 -53043285 + MIR3 SINE MIR 82 208 0 2270 107 0 0 chr15 48337436 48337735 -53042786 + AluSq SINE Alu 1 299 -14 222 37 0 0 chr15 48337840 48337867 -53042654 + (TG)n Simple_repeat Simple_repeat 2 28 0 452 290 165 10 chr15 48339422 48339622 -53040899 + MIR SINE MIR 13 243 -19 4027 123 66 83 chr15 48339656 48340454 -53040067 - LTR1 LTR ERV1 0 785 1 298 310 259 25 chr15 48341142 48341381 -53039140 + L3 LINE CR1 208 502 -1075 240 59 0 0 chr15 48341413 48341447 -53039074 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 2202 109 0 10 chr15 48341511 48341813 -53038708 - AluSx SINE Alu -13 299 1 562 349 86 10 chr15 48341833 48342217 -53038304 + L3 LINE CR1 529 941 -636 9475 158 17 121 chr15 48342217 48344111 -53036410 + L1M1 LINE L1 3399 5489 -2076 1112 216 17 4 chr15 48344111 48344347 -53036174 + AluJb SINE Alu 70 308 -4 9475 158 17 121 chr15 48344347 48344489 -53036032 + L1M1 LINE L1 5489 5644 -1921 2000 84 0 15 chr15 48344489 48344750 -53035771 + AluY SINE Alu 36 292 -19 9475 158 17 121 chr15 48344750 48345165 -53035356 + L1M1 LINE L1 5644 5801 -1764 2019 131 0 7 chr15 48345362 48345670 -53034851 + AluSx SINE Alu 1 306 0 1674 123 69 7 chr15 48345682 48345959 -53034562 + L1MA4 LINE L1 6001 6294 -6 2352 110 0 0 chr15 48346131 48346441 -53034080 + AluSx SINE Alu 1 310 -2 26 30 0 0 chr15 48346708 48346741 -53033780 + AT_rich Low_complexity Low_complexity 1 33 0 2369 93 0 0 chr15 48347093 48347394 -53033127 + AluSx SINE Alu 4 304 -8 696 273 98 45 chr15 48347978 48348264 -53032257 - MLT1I LTR MaLR 0 409 109 719 281 208 19 chr15 48348759 48349270 -53031251 - L2 LINE L2 0 3313 2682 2165 93 0 20 chr15 48349270 48349570 -53030951 + AluSx SINE Alu 1 294 -18 719 281 208 19 chr15 48349570 48349627 -53030894 - L2 LINE L2 -631 2682 2637 1745 152 7 55 chr15 48350025 48350335 -53030186 + AluJo SINE Alu 1 295 -17 473 265 20 77 chr15 48350393 48350605 -53029916 + MIR SINE MIR 37 235 -27 2168 132 0 0 chr15 48350772 48351068 -53029453 + AluSg SINE Alu 1 296 -14 21 0 0 0 chr15 48352778 48352799 -53027722 + GC_rich Low_complexity Low_complexity 1 21 0 241 269 0 15 chr15 48353676 48353743 -53026778 + MIR3 SINE MIR 107 172 -36 205 243 314 0 chr15 48354134 48354204 -53026317 - MER5A DNA MER1_type -88 101 10 206 244 0 13 chr15 48354377 48354455 -53026066 + T-rich Low_complexity Low_complexity 4 80 0 2032 119 10 23 chr15 48354586 48354888 -53025633 + AluJo SINE Alu 1 298 -14 261 0 0 0 chr15 48354889 48354918 -53025603 + (TA)n Simple_repeat Simple_repeat 1 29 0 754 208 0 0 chr15 48355237 48355367 -53025154 + FLAM_A SINE Alu 2 131 -2 2947 200 132 36 chr15 48356063 48357234 -53023287 - L1ME2 LINE L1 -1 6163 4887 1832 167 14 0 chr15 48357234 48357521 -53023000 + AluJb SINE Alu 1 291 -21 1845 171 0 19 chr15 48357984 48358294 -53022227 - AluJb SINE Alu -8 304 1 1677 104 33 62 chr15 48358812 48359119 -53021402 - L1MB8 LINE L1 -5 6173 5876 2385 82 0 0 chr15 48359146 48359439 -53021082 + AluSc SINE Alu 17 309 0 883 171 48 0 chr15 48359919 48360065 -53020456 - MER58A DNA MER1_type 0 153 1 1118 140 21 5 chr15 48360934 48361120 -53019401 + MER5A DNA MER1_type 1 189 0 2025 154 0 13 chr15 48361679 48361991 -53018530 + AluJb SINE Alu 1 308 -4 1164 272 134 25 chr15 48362321 48362890 -53017631 + L1ME3 LINE L1 5321 5951 -211 21 71 0 0 chr15 48363338 48363380 -53017141 + AT_rich Low_complexity Low_complexity 1 42 0 235 235 0 15 chr15 48363662 48363730 -53016791 + MER114 LTR ERV 2 68 -580 1972 163 0 3 chr15 48363755 48364056 -53016465 - AluJo SINE Alu -12 300 1 644 187 75 0 chr15 48364593 48364700 -53015821 + FLAM_A SINE Alu 1 115 -18 33 56 0 0 chr15 48364704 48364758 -53015763 + AT_rich Low_complexity Low_complexity 1 54 0 2319 91 0 0 chr15 48366357 48366655 -53013866 + AluSx SINE Alu 1 298 -14 1673 168 56 3 chr15 48367361 48367646 -53012875 - AluJb SINE Alu -12 300 1 2016 122 7 3 chr15 48369699 48369985 -53010536 + AluSx SINE Alu 15 301 -11 471 182 30 20 chr15 48370023 48370122 -53010399 - MER20 DNA MER1_type -3 216 117 2218 215 43 41 chr15 48370138 48370695 -53009826 - MER74B LTR ERVL 0 622 65 1179 175 0 24 chr15 48370697 48370908 -53009613 - AluJo SINE Alu -21 291 86 504 191 22 0 chr15 48370920 48371009 -53009512 - MER20 DNA MER1_type -128 91 1 334 258 106 73 chr15 48371009 48371160 -53009361 - MIR3 SINE MIR -48 160 5 21 0 0 0 chr15 48371596 48371617 -53008904 + AT_rich Low_complexity Low_complexity 1 21 0 1815 161 0 41 chr15 48371874 48372190 -53008331 + AluJo SINE Alu 1 303 -9 530 367 126 25 chr15 48372440 48372846 -53007675 - L2 LINE L2 -5 3267 2821 225 355 78 35 chr15 48372891 48373032 -53007489 - L2 LINE L2 -679 2635 2489 1260 81 55 150 chr15 48374018 48374291 -53006230 - L1PA13 LINE L1 -19 6144 5898 1979 143 7 0 chr15 48374392 48374686 -53005835 + AluSx SINE Alu 2 297 -15 2134 114 0 0 chr15 48375627 48375939 -53004582 - AluSx SINE Alu 0 312 1 302 215 0 15 chr15 48376225 48376290 -53004231 - MLT1J2 LTR MaLR -326 124 61 1891 161 97 49 chr15 48376461 48376851 -53003670 - MLT2D LTR ERVL -4 410 2 652 213 50 69 chr15 48377693 48377812 -53002709 - L1ME3A LINE L1 0 6162 6042 2219 92 7 7 chr15 48377812 48378105 -53002416 + AluSx SINE Alu 1 293 -19 652 213 50 69 chr15 48378105 48378248 -53002273 - L1ME3A LINE L1 -120 6042 5908 863 150 81 62 chr15 48378301 48378461 -53002060 - FRAM SINE Alu 0 166 4 617 144 8 34 chr15 48379295 48379413 -53001108 - Charlie2b DNA MER1_type -795 1987 1873 289 136 0 0 chr15 48379411 48379455 -53001066 - AluSq SINE Alu -5 295 252 * 1281 97 6 0 chr15 48379456 48379621 -53000900 - AluSq SINE Alu -147 166 1 1009 209 193 54 chr15 48379627 48380129 -53000392 - Charlie2b DNA MER1_type -920 1862 1291 763 273 61 34 chr15 48380124 48380417 -53000104 - Charlie2b DNA MER1_type -1910 872 572 * 545 85 24 0 chr15 48381138 48381220 -52999301 - AluS SINE Alu -227 85 2 1999 133 0 14 chr15 48381574 48381886 -52998635 + AluSx SINE Alu 1 308 0 218 209 0 0 chr15 48381915 48381958 -52998563 + A-rich Low_complexity Low_complexity 2 44 0 1839 146 34 0 chr15 48381974 48382269 -52998252 + AluSx SINE Alu 5 309 -3 2255 101 3 22 chr15 48382293 48382610 -52997911 + AluSq SINE Alu 3 313 0 314 301 20 20 chr15 48382613 48382759 -52997762 + L1MEc LINE L1 1455 1600 -4796 2164 203 20 81 chr15 48382807 48383397 -52997124 - MLT2B3 LTR ERVL 0 554 1 410 223 33 107 chr15 48383397 48383467 -52997054 + L1MEc LINE L1 1595 1669 -4727 577 165 74 50 chr15 48383467 48383588 -52996933 + FLAM_A SINE Alu 1 124 -9 2369 89 3 3 chr15 48383591 48383895 -52996626 + AluSp SINE Alu 1 304 -9 410 223 33 107 chr15 48383895 48384062 -52996459 + L1MEc LINE L1 1671 1818 -4578 2268 103 7 7 chr15 48384086 48384396 -52996125 + AluSx SINE Alu 1 310 -2 2057 109 41 7 chr15 48384402 48384695 -52995826 + AluSg SINE Alu 1 303 -7 500 156 10 0 chr15 48384709 48384805 -52995716 - L1 LINE L1 -847 5299 5203 2420 98 0 0 chr15 48384805 48385110 -52995411 - AluSg SINE Alu -5 305 1 1830 133 54 0 chr15 48385119 48385398 -52995123 - AluSx SINE Alu -18 294 1 314 148 0 0 chr15 48385404 48385458 -52995063 + LTR37B LTR ERV1 237 290 -178 2124 121 3 3 chr15 48385461 48385758 -52994763 - AluSx SINE Alu -15 297 1 280 206 55 0 chr15 48385759 48385832 -52994689 - L1 LINE L1 -951 5195 5119 * 1961 234 44 31 chr15 48385829 48386172 -52994349 - L1M4c LINE L1 -4606 2038 1701 2205 131 0 0 chr15 48386172 48386469 -52994052 - AluSx SINE Alu -15 297 1 1961 234 44 31 chr15 48386469 48386719 -52993802 - L1M4c LINE L1 -4943 1701 1456 2420 103 0 0 chr15 48386719 48387031 -52993490 - AluSx SINE Alu 0 312 1 1961 234 44 31 chr15 48387031 48387133 -52993388 - L1M4c LINE L1 -5188 1456 1 2735 38 6 26 chr15 48389098 48389440 -52991081 - L1PA6 LINE L1 0 6154 5820 2658 37 0 0 chr15 48389440 48389734 -52990787 - AluY SINE Alu -17 294 1 2207 120 13 0 chr15 48389739 48390039 -52990482 - AluSx SINE Alu -8 304 1 2125 118 10 0 chr15 48390374 48390663 -52989858 - AluSx SINE Alu -19 293 2 1377 220 46 21 chr15 48390688 48391090 -52989431 - L1ME1 LINE L1 -51 6115 5763 2037 137 3 13 chr15 48391477 48391777 -52988744 - AluSx SINE Alu -13 299 3 190 302 32 0 chr15 48392764 48392827 -52987694 + MIR3 SINE MIR 137 201 -7 2482 72 3 7 chr15 48393576 48393882 -52986639 + AluSp SINE Alu 1 305 -8 21 57 0 0 chr15 48393932 48393967 -52986554 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr15 48394634 48394665 -52985856 + AT_rich Low_complexity Low_complexity 1 31 0 803 168 8 0 chr15 48394685 48394816 -52985705 - FLAM_A SINE Alu -1 132 1 258 315 46 0 chr15 48395061 48395169 -52985352 - L1MEd LINE L1 -5737 382 270 244 210 49 12 chr15 48395250 48395331 -52985190 - L1MEd LINE L1 -6000 119 36 2195 122 0 13 chr15 48395659 48395970 -52984551 - AluSx SINE Alu -5 307 1 252 279 73 67 chr15 48397279 48397444 -52983077 + MIR SINE MIR 80 245 -17 1989 125 10 7 chr15 48398952 48399241 -52981280 - AluSx SINE Alu -22 290 1 2386 94 3 0 chr15 48399797 48400106 -52980415 + AluSq SINE Alu 1 310 -3 206 313 45 34 chr15 48400692 48400871 -52979650 - L2 LINE L2 -166 3106 2926 2193 106 0 13 chr15 48400975 48401277 -52979244 - AluSx SINE Alu -14 298 1 1843 164 0 7 chr15 48401282 48401581 -52978940 - AluJo SINE Alu -15 297 1 1843 136 9 67 chr15 48401696 48402026 -52978495 - AluSx SINE Alu -1 311 1 666 185 138 0 chr15 48402206 48402336 -52978185 + MER2 DNA MER2_type 1 148 -197 1010 178 178 4 chr15 48402353 48402427 -52978094 + AluJb SINE Alu 30 90 -222 225 0 0 0 chr15 48402427 48402452 -52978069 + (CAA)n Simple_repeat Simple_repeat 3 27 0 * 261 0 0 0 chr15 48402451 48402480 -52978041 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1010 178 178 4 chr15 48402452 48402630 -52977891 + AluJb SINE Alu 90 293 -19 242 26 184 0 chr15 48402633 48402671 -52977850 + MER2 DNA MER2_type 142 186 -159 2139 96 3 55 chr15 48402671 48402983 -52977538 + AluSx SINE Alu 1 296 -16 251 224 60 0 chr15 48403687 48403754 -52976767 - MIR SINE MIR -89 173 103 2178 107 13 3 chr15 48404930 48405228 -52975293 - AluSx SINE Alu -11 301 1 2262 123 7 0 chr15 48405228 48405536 -52974985 - AluSx SINE Alu -2 310 1 2061 109 0 0 chr15 48405672 48405939 -52974582 - AluSx SINE Alu -5 307 41 695 150 8 33 chr15 48406642 48406762 -52973759 - FLAM_A SINE Alu -8 134 18 243 104 62 21 chr15 48406840 48406888 -52973633 - L1M4c LINE L1 -3900 2484 2435 * 1369 173 146 9 chr15 48406859 48407201 -52973320 - L1MB5 LINE L1 -96 6314 5926 852 236 20 39 chr15 48407206 48407460 -52973061 + AluSq SINE Alu 51 299 -14 447 292 30 39 chr15 48407971 48408204 -52972317 - L1ME4a LINE L1 -2 6119 5889 1953 111 251 0 chr15 48408204 48408546 -52971975 + MSTA LTR MaLR 1 428 0 2507 77 0 0 chr15 48408558 48408869 -52971652 - AluY SINE Alu 0 311 1 2277 120 7 0 chr15 48408872 48409173 -52971348 - AluSx SINE Alu -9 303 1 1488 193 0 0 chr15 48409186 48409450 -52971071 - AluJo SINE Alu -13 299 36 933 245 20 0 chr15 48409696 48409896 -52970625 - MER63A DNA MER1_type -6 204 1 1947 78 28 100 chr15 48409942 48410263 -52970258 + AluYb8 SINE Alu 1 298 -20 481 282 57 30 chr15 48410285 48410547 -52969974 - L1ME4a LINE L1 -216 5905 5637 542 146 0 22 chr15 48410552 48410641 -52969880 - FRAM SINE Alu -15 161 75 251 305 37 0 chr15 48410641 48410723 -52969798 - L1ME4a LINE L1 -481 5640 5556 26 30 0 0 chr15 48410724 48410757 -52969764 + AT_rich Low_complexity Low_complexity 1 33 0 1648 157 15 4 chr15 48410757 48411019 -52969502 - AluJo SINE Alu -39 273 9 2200 85 27 0 chr15 48411057 48411351 -52969170 - AluSp SINE Alu -11 302 1 204 114 0 29 chr15 48412029 48412064 -52968457 + (TG)n Simple_repeat Simple_repeat 2 35 0 317 220 44 90 chr15 48413042 48413054 -52967467 - L1 LINE L1 -1123 5023 5012 2456 74 7 3 chr15 48413054 48413364 -52967157 - AluY SINE Alu 0 311 1 317 220 44 90 chr15 48413364 48413500 -52967021 - L1 LINE L1 -1134 5012 4882 1416 214 22 26 chr15 48413601 48413914 -52966607 - AluJo SINE Alu 0 312 1 2196 151 19 3 chr15 48414903 48415273 -52965248 - L1MB7 LINE L1 -16 6168 5793 1674 190 51 3 chr15 48415274 48415606 -52964915 - L1MB7 LINE L1 -437 5747 5400 360 0 0 0 chr15 48415632 48415672 -52964849 + (TG)n Simple_repeat Simple_repeat 2 41 0 1126 118 6 0 chr15 48416527 48416696 -52963825 - AluSc SINE Alu -8 301 132 2343 86 0 10 chr15 48416696 48416997 -52963524 - AluY SINE Alu -13 298 1 611 224 68 5 chr15 48417025 48417217 -52963304 - L1MEc LINE L1 -3661 2554 2351 228 35 0 0 chr15 48417232 48417261 -52963260 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1420 185 40 22 chr15 48417266 48417542 -52962979 - AluJo SINE Alu -30 282 2 2527 64 0 0 chr15 48417544 48417840 -52962681 - AluY SINE Alu -15 296 1 1554 185 45 7 chr15 48417873 48418160 -52962361 + AluJo SINE Alu 3 300 -12 3418 212 30 33 chr15 48418177 48418477 -52962044 - L1MEc LINE L1 -5426 970 671 2379 80 7 7 chr15 48418477 48418776 -52961745 + AluSq SINE Alu 1 299 -14 3418 212 30 33 chr15 48418776 48419328 -52961193 - L1MEc LINE L1 -5725 671 120 702 194 8 8 chr15 48419330 48419456 -52961065 + AluJo SINE Alu 2 130 -182 459 0 0 0 chr15 48419456 48419507 -52961014 + (TG)n Simple_repeat Simple_repeat 2 52 0 413 137 27 0 chr15 48419514 48419587 -52960934 - L1MEc LINE L1 -6272 124 50 205 203 0 72 chr15 48420767 48420836 -52959685 - MER5B DNA MER1_type -1 177 114 405 0 0 0 chr15 48420957 48421002 -52959519 + (CA)n Simple_repeat Simple_repeat 1 45 0 4385 195 46 66 chr15 48421425 48422216 -52958305 - L1MB7 LINE L1 -10 6174 5368 695 239 0 0 chr15 48422216 48422346 -52958175 - FLAM_A SINE Alu -3 130 1 4385 195 46 66 chr15 48422346 48422659 -52957862 - L1MB7 LINE L1 -816 5368 5050 2165 90 0 7 chr15 48422659 48422936 -52957585 - AluSp SINE Alu 0 313 39 4385 195 46 66 chr15 48422936 48422995 -52957526 - L1MB7 LINE L1 -1134 5050 4991 2390 97 0 0 chr15 48422995 48423305 -52957216 - AluSx SINE Alu -2 310 1 4385 195 46 66 chr15 48423305 48423442 -52957079 - L1MB7 LINE L1 -1193 4991 4853 1540 124 154 11 chr15 48423442 48423709 -52956812 + AluSg1 SINE Alu 1 305 -4 4385 195 46 66 chr15 48423709 48424058 -52956463 - L1MB7 LINE L1 -1331 4853 4566 573 185 67 0 chr15 48424639 48424774 -52955747 - L1MA8 LINE L1 -1 6290 6147 656 251 11 17 chr15 48424814 48424993 -52955528 + MER5B DNA MER1_type 1 178 0 798 251 116 43 chr15 48425678 48425740 -52954781 + MLT1L LTR MaLR 219 275 -340 767 42 42 0 chr15 48425740 48425836 -52954685 + HY3 scRNA scRNA 1 100 -1 798 251 116 43 chr15 48425836 48426100 -52954421 + MLT1L LTR MaLR 275 569 -46 311 176 15 15 chr15 48426122 48426190 -52954331 + MER5A DNA MER1_type 37 104 -85 10391 66 11 37 chr15 48426470 48427892 -52952629 - SVA Other Other 0 1386 2 225 0 0 0 chr15 48427899 48427924 -52952597 + (GGGAGA)n Simple_repeat Simple_repeat 3 27 0 2345 106 0 7 chr15 48428121 48428423 -52952098 + AluSx SINE Alu 1 300 -12 1621 173 32 0 chr15 48430775 48431058 -52949463 + AluJo SINE Alu 1 292 -20 256 238 41 115 chr15 48431080 48431349 -52949172 - L1ME4a LINE L1 -11 6110 5862 1943 131 3 26 chr15 48431354 48431660 -52948861 - AluSx SINE Alu -13 299 1 288 303 90 37 chr15 48431665 48431853 -52948668 - MIR SINE MIR -15 247 50 1172 220 84 85 chr15 48431978 48432636 -52947885 - L1MC5 LINE L1 -33 7928 7272 466 342 161 6 chr15 48432907 48433255 -52947266 - L3 LINE CR1 -50 1527 1126 2225 126 3 0 chr15 48434196 48434506 -52946015 + AluSx SINE Alu 1 311 -1 2401 68 3 0 chr15 48434667 48434960 -52945561 + AluY SINE Alu 1 294 -17 862 142 0 57 chr15 48435452 48435593 -52944928 + FLAM_A SINE Alu 1 133 0 2170 206 113 8 chr15 48435597 48436103 -52944418 - L1ME1 LINE L1 -4 6162 5604 2311 102 0 10 chr15 48436399 48436702 -52943819 - AluSx SINE Alu -12 300 1 21 0 0 0 chr15 48436702 48436723 -52943798 + AT_rich Low_complexity Low_complexity 1 21 0 2137 135 3 0 chr15 48437009 48437312 -52943209 + AluSq SINE Alu 1 304 -9 236 248 165 9 chr15 48437902 48437932 -52942589 - L1MB1 LINE L1 -201 5967 5938 366 295 22 0 chr15 48437932 48438071 -52942450 - L1MC4a LINE L1 -1884 5924 5783 815 160 45 0 chr15 48438079 48438235 -52942286 - L1 LINE L1 -2209 3937 3775 2672 252 102 45 chr15 48438237 48438665 -52941856 + L2 LINE L2 2009 2411 -902 2467 77 0 0 chr15 48438665 48438964 -52941557 - AluSg SINE Alu -10 300 2 2672 252 102 45 chr15 48438964 48439760 -52940761 + L2 LINE L2 2411 3299 -14 321 313 20 0 chr15 48439980 48440079 -52940442 + CT-rich Low_complexity Low_complexity 2 102 0 2238 125 0 0 chr15 48440566 48440871 -52939650 + AluJb SINE Alu 1 305 -7 285 146 42 0 chr15 48440882 48440930 -52939591 - MER2 DNA MER2_type -29 316 267 1103 162 0 0 chr15 48441013 48441186 -52939335 - MER2 DNA MER2_type -172 173 1 1688 116 4 4 chr15 48441450 48441682 -52938839 + AluSx SINE Alu 58 289 -23 374 161 145 57 chr15 48441839 48441963 -52938558 - L1ME4a LINE L1 -1 6120 5986 2315 103 7 0 chr15 48441968 48442269 -52938252 - AluSq SINE Alu -10 303 1 1873 181 0 3 chr15 48442467 48442771 -52937750 - AluJb SINE Alu -9 303 1 550 147 32 26 chr15 48443001 48443157 -52937364 + CT-rich Low_complexity Low_complexity 1 157 0 1701 169 48 0 chr15 48443157 48443447 -52937074 - AluJb SINE Alu -8 304 1 243 281 0 24 chr15 48443448 48443530 -52936991 + MIR SINE MIR 118 197 -65 293 128 0 0 chr15 48443534 48443581 -52936940 + MER46C DNA MER2_type 4 50 -288 670 219 143 9 chr15 48443644 48443854 -52936667 + MER46C DNA MER2_type 35 272 -66 2046 136 0 3 chr15 48443854 48444149 -52936372 + AluSx SINE Alu 3 296 -16 315 240 90 50 chr15 48444153 48444253 -52936268 - HAL1 LINE L1 -694 1813 1710 419 235 143 37 chr15 48444286 48444450 -52936071 - MLT1F LTR MaLR -2 591 446 1783 184 3 7 chr15 48444450 48444760 -52935761 + AluJo SINE Alu 1 309 -3 419 235 143 37 chr15 48444760 48444910 -52935611 - MLT1F LTR MaLR -147 446 216 2006 111 7 4 chr15 48444984 48445263 -52935258 + AluSx SINE Alu 1 280 -32 682 209 36 61 chr15 48445289 48445319 -52935202 - HAL1 LINE L1 -919 1588 1559 2080 118 3 10 chr15 48445319 48445624 -52934897 - AluSg SINE Alu -7 303 1 682 209 36 61 chr15 48445624 48445789 -52934732 - HAL1 LINE L1 -948 1559 1398 2399 82 0 3 chr15 48445997 48446302 -52934219 - AluY SINE Alu -7 304 1 2429 66 0 0 chr15 48446737 48447026 -52933495 - AluSc SINE Alu -20 289 1 2100 114 4 0 chr15 48447270 48447550 -52932971 + AluSx SINE Alu 1 281 -31 2328 62 10 20 chr15 48447606 48447912 -52932609 - AluY SINE Alu -8 303 1 795 203 0 0 chr15 48448027 48448145 -52932376 + FLAM_C SINE Alu 3 120 -23 28 48 0 0 chr15 48448145 48448187 -52932334 + AT_rich Low_complexity Low_complexity 1 42 0 2234 113 3 25 chr15 48448335 48448653 -52931868 + AluSq SINE Alu 1 311 -2 832 190 25 0 chr15 48448778 48448936 -52931585 + FRAM SINE Alu 1 159 -17 259 247 0 0 chr15 48449301 48449358 -52931163 - FAM SINE Alu -7 168 123 781 221 51 41 chr15 48449549 48449825 -52930696 - L1MC/D LINE L1 -535 5639 5400 360 0 0 0 chr15 48449851 48449891 -52930630 + (TG)n Simple_repeat Simple_repeat 2 41 0 2180 93 3 13 chr15 48450746 48450916 -52929605 - AluSc SINE Alu -8 301 134 2679 42 0 6 chr15 48450916 48451229 -52929292 - AluY SINE Alu 0 311 1 2180 93 3 13 chr15 48451229 48451360 -52929161 - AluSc SINE Alu -175 134 3 391 278 107 21 chr15 48452176 48452363 -52928158 - MIR SINE MIR -35 227 25 326 228 28 110 chr15 48452558 48452703 -52927818 + L2 LINE L2 3181 3313 0 2103 106 39 0 chr15 48453494 48453777 -52926744 + AluSx SINE Alu 1 294 -18 1997 17 0 30 chr15 48454033 48454266 -52926255 + AluYb8 SINE Alu 93 318 0 2448 60 13 10 chr15 48455020 48455322 -52925199 + AluSp SINE Alu 1 303 -10 731 133 9 0 chr15 48455482 48455587 -52924934 + U6 snRNA snRNA 2 107 0 801 146 0 51 chr15 48456574 48456711 -52923810 + AluSq/x SINE Alu 2 131 -182 2201 108 0 3 chr15 48458573 48458879 -52921642 + AluSx SINE Alu 1 305 0 211 65 43 22 chr15 48459033 48459079 -52921442 + (GTTTG)n Simple_repeat Simple_repeat 2 48 0 266 313 10 10 chr15 48459180 48459279 -52921242 + CT-rich Low_complexity Low_complexity 3 101 0 198 0 0 0 chr15 48459478 48459500 -52921021 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 29 20 0 39 chr15 48460397 48460427 -52920094 + AT_rich Low_complexity Low_complexity 1 30 -19 2452 68 3 0 chr15 48460427 48460722 -52919799 + AluSp SINE Alu 1 296 -17 29 20 0 39 chr15 48460722 48460742 -52919779 + AT_rich Low_complexity Low_complexity 30 49 0 2179 108 10 3 chr15 48461256 48461553 -52918968 - AluSx SINE Alu -13 299 1 1082 157 27 11 chr15 48461606 48461791 -52918730 + MER46A DNA MER2_type 49 236 0 22 35 0 0 chr15 48461863 48461892 -52918629 + AT_rich Low_complexity Low_complexity 1 29 0 1890 172 0 7 chr15 48462012 48462314 -52918207 + AluJb SINE Alu 1 300 -12 1409 192 52 4 chr15 48462317 48462588 -52917933 + AluJo SINE Alu 23 306 -6 2149 118 3 3 chr15 48462663 48462952 -52917569 + AluSx SINE Alu 1 289 -23 1547 121 152 4 chr15 48463014 48463278 -52917243 - AluYb8 SINE Alu -15 303 1 1748 197 58 44 chr15 48464089 48464454 -52916067 + MLT1A2 LTR MaLR 1 370 -4 330 183 12 37 chr15 48464465 48464547 -52915974 + MER116 DNA Mariner 1 80 0 2383 108 0 0 chr15 48464617 48464924 -52915597 + AluSx SINE Alu 1 307 -5 2179 130 7 0 chr15 48465060 48465361 -52915160 + AluSx SINE Alu 1 303 -9 2164 107 13 3 chr15 48465361 48465660 -52914861 + AluSx SINE Alu 1 302 -10 271 224 60 0 chr15 48466836 48466903 -52913618 + MIR SINE MIR 103 173 -89 2153 97 3 51 chr15 48467609 48467920 -52912601 - AluSx SINE Alu -16 296 1 247 26 184 0 chr15 48467920 48467958 -52912563 - MER2 DNA MER2_type -159 186 142 1135 167 117 13 chr15 48467961 48468110 -52912411 - AluJb SINE Alu -19 293 108 486 0 0 0 chr15 48468110 48468164 -52912357 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 1135 167 117 13 chr15 48468164 48468253 -52912268 - AluJb SINE Alu -204 108 30 671 185 138 0 chr15 48468270 48468400 -52912121 - MER2 DNA MER2_type -197 148 1 195 214 314 0 chr15 48468460 48468530 -52911991 + L2 LINE L2 3181 3272 0 1823 140 9 61 chr15 48468580 48468908 -52911613 + AluSx SINE Alu 1 311 -1 1807 160 0 10 chr15 48469023 48469323 -52911198 + AluJo SINE Alu 1 297 -15 2189 103 0 13 chr15 48469328 48469630 -52910891 + AluSx SINE Alu 1 298 -14 285 298 44 73 chr15 48469734 48469982 -52910539 + L2 LINE L2 2926 3166 -106 2342 97 3 0 chr15 48470498 48470807 -52909714 - AluSq SINE Alu -3 310 1 1961 125 10 7 chr15 48471363 48471652 -52908869 + AluSx SINE Alu 1 290 -22 294 279 73 67 chr15 48473159 48473324 -52907197 - MIR SINE MIR -17 245 80 2188 122 0 13 chr15 48474633 48474945 -52905576 + AluSx SINE Alu 1 308 -4 249 210 49 12 chr15 48475273 48475354 -52905167 + L1MEd LINE L1 36 119 -6000 244 324 46 0 chr15 48475435 48475543 -52904978 + L1MEd LINE L1 270 382 -5737 853 168 8 0 chr15 48475788 48475919 -52904602 + FLAM_A SINE Alu 1 132 -1 25 31 0 0 chr15 48475939 48475971 -52904550 + AT_rich Low_complexity Low_complexity 1 32 0 2201 125 0 0 chr15 48476976 48477273 -52903248 - AluSx SINE Alu -15 297 1 2210 107 0 3 chr15 48477835 48478126 -52902395 - AluSx SINE Alu -20 292 3 201 159 0 0 chr15 48478278 48478322 -52902199 + A-rich Low_complexity Low_complexity 1 44 0 38 22 0 0 chr15 48478520 48478565 -52901956 + AT_rich Low_complexity Low_complexity 1 45 0 1906 211 97 33 chr15 48479104 48479591 -52900930 + MLT1F LTR MaLR 1 518 -24 2238 138 0 0 chr15 48479599 48479911 -52900610 - AluSx SINE Alu 0 312 1 1878 110 99 0 chr15 48480140 48480412 -52900109 + AluSx SINE Alu 1 299 -13 2142 122 0 0 chr15 48480798 48481110 -52899411 - AluSx SINE Alu 0 312 1 314 216 0 68 chr15 48481351 48481439 -52899082 + L1MC4 LINE L1 6443 6524 -1518 2161 309 79 18 chr15 48481439 48481675 -52898846 - ERVL LTR ERVL -2154 3610 3390 2323 69 3 10 chr15 48481675 48481980 -52898541 + AluY SINE Alu 1 303 -8 2161 309 79 18 chr15 48481980 48482641 -52897880 - ERVL LTR ERVL -2374 3390 2658 755 83 0 0 chr15 48482776 48482872 -52897649 - AluS SINE Alu -215 97 2 293 42 83 0 chr15 48482939 48482987 -52897534 + AluY SINE Alu 251 302 0 324 240 87 10 chr15 48483005 48483109 -52897412 - ERVL LTR ERVL -3263 2501 2390 589 115 0 0 chr15 48483109 48483187 -52897334 + AluS SINE Alu 2 79 -233 293 42 83 0 chr15 48483332 48483380 -52897141 + AluY SINE Alu 249 300 0 1676 251 53 69 chr15 48483380 48483483 -52897038 - ERVL LTR ERVL -3263 2501 2398 1972 134 0 7 chr15 48483483 48483781 -52896740 + AluSx SINE Alu 1 296 -16 1676 251 53 69 chr15 48483781 48483802 -52896719 - ERVL LTR ERVL -3366 2398 2378 186 118 0 0 chr15 48483802 48483836 -52896685 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 1676 251 53 69 chr15 48483836 48484292 -52896229 - ERVL LTR ERVL -3386 2378 1929 1061 225 152 23 chr15 48484434 48485063 -52895458 - LTR50 LTR ERVL -6 789 1 299 263 40 0 chr15 48485419 48485495 -52895026 + MLT1C LTR MaLR 1 79 -488 2084 99 10 3 chr15 48485497 48485790 -52894731 - AluSx SINE Alu -17 295 1 351 93 19 130 chr15 48485792 48485900 -52894621 - MER96B DNA MER1_type? -238 179 84 984 220 83 42 chr15 48485952 48486289 -52894232 + MLT1C LTR MaLR 50 400 -67 1167 86 0 3 chr15 48486423 48486645 -52893876 - AluSc SINE Alu -15 294 2 2165 114 0 13 chr15 48487553 48487869 -52892652 + AluSx SINE Alu 1 312 0 2308 79 0 3 chr15 48488624 48488929 -52891592 + AluSg SINE Alu 1 304 -6 2203 92 0 7 chr15 48488929 48489224 -52891297 + AluSg SINE Alu 1 293 -17 248 315 94 31 chr15 48489872 48489999 -52890522 - MIR SINE MIR -74 188 54 2171 111 0 13 chr15 48490687 48491003 -52889518 + AluSx SINE Alu 1 312 0 807 151 0 0 chr15 48491019 48491145 -52889376 + AluJo/FLAM SINE Alu 2 127 -185 1659 128 0 44 chr15 48491145 48491466 -52889055 + AluSg SINE Alu 1 307 -3 2167 112 0 3 chr15 48491480 48491785 -52888736 + AluSg SINE Alu 1 304 -6 1594 250 69 22 chr15 48491787 48492382 -52888139 + L1M4c LINE L1 976 1598 -4786 32 0 0 0 chr15 48492584 48492616 -52887905 + AT_rich Low_complexity Low_complexity 1 32 0 292 282 81 48 chr15 48492902 48493026 -52887495 - MIR SINE MIR -132 130 3 302 221 106 10 chr15 48493087 48493191 -52887330 + L2 LINE L2 2669 2782 -532 835 143 0 0 chr15 48493203 48493329 -52887192 + AluJb SINE Alu 8 133 -179 764 267 90 33 chr15 48493337 48493755 -52886766 + L2 LINE L2 2771 3207 -106 2256 99 0 0 chr15 48493821 48494123 -52886398 + AluY SINE Alu 1 302 -9 38 81 0 0 chr15 48494163 48494250 -52886271 + AT_rich Low_complexity Low_complexity 1 87 0 2037 92 7 30 chr15 48494270 48494565 -52885956 - AluSp SINE Alu -25 288 1 1561 168 56 7 chr15 48494624 48494910 -52885611 - AluJo SINE Alu -12 300 1 205 307 37 90 chr15 48495105 48495294 -52885227 + L2 LINE L2 2986 3164 -108 1690 157 0 30 chr15 48495489 48495789 -52884732 - AluJo SINE Alu -17 295 5 26 0 0 0 chr15 48496421 48496447 -52884074 + AT_rich Low_complexity Low_complexity 1 26 0 185 195 171 0 chr15 48496648 48496689 -52883832 - L2 LINE L2 -15 3257 3210 * 578 294 15 30 chr15 48496657 48496854 -52883667 - MIR SINE MIR -25 237 44 597 321 67 22 chr15 48496947 48497190 -52883331 + MIR SINE MIR 4 260 -2 2474 63 0 0 chr15 48497486 48497785 -52882736 + AluSx SINE Alu 1 299 -13 382 0 0 0 chr15 48500351 48500395 -52880126 + MADE1 DNA Mariner 3 46 -34 432 256 80 7 chr15 48500415 48500552 -52879969 - MIR SINE MIR -105 157 11 1886 151 3 0 chr15 48501410 48501714 -52878807 + AluSg SINE Alu 1 305 -5 1550 145 24 24 chr15 48502202 48502491 -52878030 - AluJo SINE Alu -23 289 1 226 318 16 0 chr15 48502854 48502917 -52877604 + MIR SINE MIR 72 135 -127 2176 97 0 0 chr15 48503107 48503397 -52877124 + AluSx SINE Alu 1 290 -22 1457 204 3 10 chr15 48503539 48503833 -52876688 + AluJo SINE Alu 1 292 -20 21 57 0 0 chr15 48504281 48504316 -52876205 + AT_rich Low_complexity Low_complexity 1 35 0 2323 75 3 7 chr15 48504366 48504672 -52875849 - AluSp SINE Alu -8 305 1 219 302 32 0 chr15 48505421 48505484 -52875037 - MIR3 SINE MIR -7 201 137 1472 104 0 0 chr15 48506471 48506664 -52873857 + AluSq SINE Alu 3 195 -118 297 0 0 0 chr15 48506721 48506754 -52873767 + (TGG)n Simple_repeat Simple_repeat 2 34 0 1656 78 118 16 chr15 48507090 48507345 -52873176 + AluSx SINE Alu 18 298 -14 971 110 0 0 chr15 48507378 48507514 -52873007 + AluSq/x SINE Alu 1 136 -177 544 307 63 44 chr15 48507549 48507819 -52872702 + L3 LINE CR1 1302 1576 -1 401 202 30 109 chr15 48507976 48508243 -52872278 + MER82 DNA MER2_type 23 268 -385 1469 167 18 25 chr15 48508407 48508709 -52871812 + AluJo SINE Alu 12 311 0 746 211 51 12 chr15 48508715 48509047 -52871474 + L1M4 LINE L1 3359 3793 -2353 609 143 107 8 chr15 48509018 48509165 -52871356 + L1MB8 LINE L1 5751 5895 -283 * 201 74 0 0 chr15 48509693 48509720 -52870801 + (T)n Simple_repeat Simple_repeat 1 27 0 344 248 57 45 chr15 48509843 48510000 -52870521 - L1ME LINE L1 -508 5662 5504 1545 157 150 30 chr15 48510885 48511218 -52869303 - L1M4 LINE L1 -362 5822 5530 2137 108 0 10 chr15 48511218 48511523 -52868998 - AluSx SINE Alu -10 302 1 1545 157 150 30 chr15 48511523 48511733 -52868788 - L1M4 LINE L1 -654 5530 5172 339 25 0 0 chr15 48511737 48511777 -52868744 + (ATTG)n Simple_repeat Simple_repeat 2 41 0 554 203 28 14 chr15 48512375 48512518 -52868003 + L1MB8 LINE L1 6034 6178 0 1750 190 88 14 chr15 48512518 48512870 -52867651 + MLT1F LTR MaLR 156 533 -9 948 131 25 6 chr15 48513022 48513182 -52867339 - AluSg/x SINE Alu -12 300 138 241 296 18 59 chr15 48513479 48513648 -52866873 + GA-rich Low_complexity Low_complexity 3 164 0 342 247 105 27 chr15 48514117 48514336 -52866185 + L1ME4a LINE L1 5885 6120 -1 1965 117 3 45 chr15 48514441 48514749 -52865772 + AluSx SINE Alu 1 295 -17 372 111 0 0 chr15 48514961 48515024 -52865497 + (C)n Simple_repeat Simple_repeat 1 63 0 568 184 0 10 chr15 48515781 48515879 -52864642 + AluSg/x SINE Alu 199 295 -14 1397 166 58 98 chr15 48515879 48516175 -52864346 - L1M4 LINE L1 -479 5695 5389 1828 121 11 0 chr15 48516175 48516448 -52864073 - AluSx SINE Alu -7 305 30 1397 166 58 98 chr15 48516448 48516465 -52864056 - L1M4 LINE L1 -785 5389 5373 1540 119 0 0 chr15 48516465 48516684 -52863837 - AluSq SINE Alu -94 219 1 1397 166 58 98 chr15 48516684 48516766 -52863755 - L1M4 LINE L1 -801 5373 5315 181 351 26 0 chr15 48516972 48517049 -52863472 + MIR SINE MIR 94 172 -90 29 70 0 0 chr15 48517092 48517149 -52863372 + AT_rich Low_complexity Low_complexity 1 57 0 673 197 56 60 chr15 48517317 48517405 -52863116 - Charlie1 DNA MER1_type -135 2626 2539 2624 29 0 0 chr15 48517405 48517715 -52862806 + AluYa5 SINE Alu 1 310 -1 673 197 56 60 chr15 48517715 48517741 -52862780 - Charlie1 DNA MER1_type -222 2539 2514 2128 96 3 3 chr15 48517741 48518033 -52862488 + AluSx SINE Alu 1 292 -20 673 197 56 60 chr15 48518033 48518201 -52862320 - Charlie1 DNA MER1_type -247 2514 2344 914 179 32 21 chr15 48518293 48518483 -52862038 + MSTD LTR MaLR 1 192 -204 2322 50 23 0 chr15 48518483 48518783 -52861738 + AluY SINE Alu 1 307 -4 555 254 15 0 chr15 48518788 48518922 -52861599 + AluJb SINE Alu 121 256 -56 24 0 0 0 chr15 48519979 48520003 -52860518 + AT_rich Low_complexity Low_complexity 1 24 0 246 217 29 43 chr15 48520518 48520587 -52859934 + MIR SINE MIR 185 252 -10 215 211 0 0 chr15 48522870 48522908 -52857613 - MIR SINE MIR -8 254 217 2056 89 10 3 chr15 48523486 48523777 -52856744 + AluSx SINE Alu 1 293 -19 23 0 0 0 chr15 48523820 48523843 -52856678 + AT_rich Low_complexity Low_complexity 1 23 0 648 220 48 100 chr15 48524143 48524223 -52856298 - MER110A LTR ERV1 -38 453 370 1235 166 91 119 chr15 48524223 48524686 -52855835 + LTR7 LTR ERV1 1 450 0 648 220 48 100 chr15 48524686 48524734 -52855787 - MER110A LTR ERV1 -121 370 321 1843 110 0 31 chr15 48524734 48525051 -52855470 - AluSc SINE Alu 0 308 1 648 220 48 100 chr15 48525051 48525385 -52855136 - MER110A LTR ERV1 -170 321 44 2081 100 40 0 chr15 48525395 48525695 -52854826 - AluSq SINE Alu -1 312 1 378 0 0 0 chr15 48525705 48525747 -52854774 + (TG)n Simple_repeat Simple_repeat 1 42 0 2022 93 7 0 chr15 48525764 48526042 -52854479 - AluSx SINE Alu -32 280 1 319 195 2 68 chr15 48526071 48526177 -52854344 + AluS SINE Alu 3 83 -220 219 335 11 17 chr15 48526401 48526577 -52853944 + CT-rich Low_complexity Low_complexity 2 176 0 300 320 9 34 chr15 48526719 48526985 -52853536 + CT-rich Low_complexity Low_complexity 1 259 0 221 287 0 46 chr15 48527058 48527166 -52853355 + C-rich Low_complexity Low_complexity 1 103 0 609 91 0 0 chr15 48527312 48527389 -52853132 - Alu SINE Alu -232 78 2 2097 119 3 3 chr15 48527568 48527880 -52852641 + AluSq SINE Alu 1 312 -1 726 233 78 10 chr15 48528320 48528357 -52852164 - MER3 DNA MER1_type 0 209 176 2172 57 50 0 chr15 48528357 48528639 -52851882 - AluY SINE Alu -15 296 1 726 233 78 10 chr15 48528639 48528794 -52851727 - MER3 DNA MER1_type -33 176 4 1195 170 0 14 chr15 48528895 48529113 -52851408 - AluJb SINE Alu -9 303 89 260 250 33 0 chr15 48529129 48529189 -52851332 - MER5A DNA MER1_type 0 189 128 876 203 38 76 chr15 48529205 48529442 -52851079 + AluJo SINE Alu 67 294 -18 2250 67 3 58 chr15 48529442 48529769 -52850752 + AluY SINE Alu 1 309 -2 468 196 18 71 chr15 48529779 48529891 -52850630 - MER5A DNA MER1_type -80 109 4 263 340 0 57 chr15 48529900 48530006 -52850515 + MIR3 SINE MIR 108 207 -1 2055 107 3 10 chr15 48530248 48530557 -52849964 + AluSc SINE Alu 1 307 -2 2443 70 7 0 chr15 48531031 48531332 -52849189 - AluSg SINE Alu -7 303 1 1813 165 0 3 chr15 48531599 48531896 -52848625 + AluJb SINE Alu 1 296 -16 21 36 0 0 chr15 48532443 48532471 -52848050 + AT_rich Low_complexity Low_complexity 1 28 0 1860 141 0 40 chr15 48532477 48532637 -52847884 - AluSx SINE Alu -27 285 141 2684 43 3 0 chr15 48532637 48532940 -52847581 - AluY SINE Alu -6 305 2 1860 141 0 40 chr15 48532940 48533076 -52847445 - AluSx SINE Alu -171 141 1 1714 299 134 44 chr15 48533101 48533174 -52847347 + L2 LINE L2 1610 1675 -1597 777 254 5 28 chr15 48533174 48533387 -52847134 - MER3 DNA MER1_type 0 209 2 1714 299 134 44 chr15 48533387 48533733 -52846788 + L2 LINE L2 1675 1989 -1283 1822 101 112 4 chr15 48533733 48534000 -52846521 - AluSx SINE Alu -16 296 1 1714 299 134 44 chr15 48534000 48535087 -52845434 + L2 LINE L2 1989 3271 -1 542 225 124 64 chr15 48535145 48535301 -52845220 + L1MC4 LINE L1 7641 7819 -223 2104 118 0 31 chr15 48535301 48535483 -52845038 - AluSx SINE Alu 0 312 143 2122 133 0 7 chr15 48535483 48535783 -52844738 - AluSx SINE Alu -14 298 1 2104 118 0 31 chr15 48535783 48535922 -52844599 - AluSx SINE Alu -169 143 1 542 225 124 64 chr15 48535922 48536014 -52844507 + L1MC4 LINE L1 7819 7904 -138 184 264 270 25 chr15 48536054 48536213 -52844308 + MIR SINE MIR 51 248 -14 1004 155 21 27 chr15 48536240 48536427 -52844094 + AluJo SINE Alu 1 186 -126 1073 138 0 46 chr15 48536605 48536779 -52843742 - AluJb SINE Alu -64 248 83 252 289 41 21 chr15 48537688 48537785 -52842736 - L2 LINE L2 -38 3234 3136 2455 87 3 0 chr15 48538207 48538517 -52842004 + AluSp SINE Alu 1 311 -2 2239 118 0 6 chr15 48539886 48540200 -52840321 + AluSx SINE Alu 1 312 0 1681 107 119 0 chr15 48540420 48540672 -52839849 + AluSx SINE Alu 1 282 -30 23 0 0 0 chr15 48540907 48540930 -52839591 + AT_rich Low_complexity Low_complexity 1 23 0 514 270 69 19 chr15 48541181 48541392 -52839129 - MLT1I LTR MaLR -152 257 34 307 209 60 0 chr15 48541457 48541524 -52838997 - L2 LINE L2 -5 3308 3238 208 254 18 0 chr15 48541814 48541869 -52838652 + L2 LINE L2 3258 3313 0 1018 185 35 15 chr15 48542485 48542685 -52837836 - AluJo SINE Alu -108 204 1 524 46 0 0 chr15 48542791 48542856 -52837665 + MER41B LTR ERV1 481 545 -90 240 35 0 0 chr15 48542862 48542891 -52837630 + (GGGGA)n Simple_repeat Simple_repeat 5 33 0 282 186 0 0 chr15 48542891 48542943 -52837578 + GA-rich Low_complexity Low_complexity 7 61 0 1809 105 0 0 chr15 48543760 48543989 -52836532 - AluSx SINE Alu -66 246 18 1285 205 86 100 chr15 48544312 48544392 -52836129 - MLT1D LTR MaLR 0 505 425 2010 135 3 0 chr15 48544392 48544681 -52835840 + AluSg SINE Alu 1 290 -20 279 0 0 0 chr15 48544682 48544713 -52835808 + (CA)n Simple_repeat Simple_repeat 2 32 0 1285 205 86 100 chr15 48544713 48545026 -52835495 - MLT1D LTR MaLR -80 425 116 2048 123 4 0 chr15 48545026 48545303 -52835218 - AluSx SINE Alu -14 298 21 1285 205 86 100 chr15 48545303 48545418 -52835103 - MLT1D LTR MaLR -389 116 1 1835 173 0 13 chr15 48545540 48545846 -52834675 - AluJo SINE Alu -8 304 3 2143 107 0 20 chr15 48546477 48546612 -52833909 + AluSp SINE Alu 1 137 -176 2204 87 0 14 chr15 48546612 48546921 -52833600 + AluY SINE Alu 1 305 0 2143 107 0 20 chr15 48546921 48547082 -52833439 + AluSp SINE Alu 137 292 -21 299 264 0 0 chr15 48547082 48547169 -52833352 - L1MC4 LINE L1 -1342 6700 6614 1980 138 0 3 chr15 48547908 48548198 -52832323 - AluJb SINE Alu -23 289 1 504 32 0 0 chr15 48548205 48548267 -52832254 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 2281 92 0 10 chr15 48548268 48548562 -52831959 - AluY SINE Alu -20 291 1 3176 198 15 26 chr15 48548565 48549171 -52831350 - MER21B LTR ERV1 -221 642 44 365 246 0 0 chr15 48549177 48549246 -52831275 - MER21B LTR ERV1 -776 87 19 336 233 9 95 chr15 48549244 48549360 -52831161 - MER21B LTR ERV1 -757 106 1 * 1249 206 32 72 chr15 48549390 48549735 -52830786 + L1MC4 LINE L1 6458 6788 -1254 682 206 15 0 chr15 48549758 48549889 -52830632 - FLAM_A SINE Alu 0 133 1 189 0 0 0 chr15 48549906 48549927 -52830594 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2311 93 3 0 chr15 48549929 48550218 -52830303 - AluSp SINE Alu -23 290 1 629 62 12 0 chr15 48550218 48550299 -52830222 + L1MC4 LINE L1 6775 6856 -1186 289 206 279 0 chr15 48550301 48550369 -52830152 + AluJ/FLAM SINE Alu 2 88 -214 372 138 0 15 chr15 48550371 48550436 -52830085 - L1MC4 LINE L1 -489 7553 7490 458 162 0 0 chr15 48550439 48550513 -52830008 + AluJ/FRAM SINE Alu 220 293 -19 1702 203 74 3 chr15 48550526 48550916 -52829605 + L1MC4 LINE L1 7238 7655 -387 1201 271 72 24 chr15 48551023 48551399 -52829122 - LTR16A LTR ERVL -23 427 34 274 340 21 14 chr15 48551442 48551583 -52828938 - HERV16 LTR ERVL -18 4978 4837 2226 135 0 0 chr15 48551604 48551915 -52828606 + AluSx SINE Alu 1 311 -1 552 333 29 47 chr15 48551937 48552345 -52828176 - ERVL LTR ERVL -455 5309 4909 2143 142 0 0 chr15 48552359 48552655 -52827866 - AluSx SINE Alu -16 296 1 1453 194 45 8 chr15 48552672 48552940 -52827581 - AluJo SINE Alu -32 280 3 2246 86 10 10 chr15 48552943 48553233 -52827288 - AluSg SINE Alu -16 294 5 2099 151 7 0 chr15 48553239 48553538 -52826983 - AluSx SINE Alu -11 301 1 2364 95 0 9 chr15 48553558 48553874 -52826647 - AluSq SINE Alu 0 313 1 2327 114 0 0 chr15 48553912 48554220 -52826301 - AluSc SINE Alu -1 308 1 1865 119 0 0 chr15 48554239 48554483 -52826038 - AluSq SINE Alu -69 244 1 1183 130 5 33 chr15 48554484 48554668 -52825853 - AluSg/x SINE Alu 0 310 132 2576 60 0 0 chr15 48554668 48554970 -52825551 - AluY SINE Alu -9 302 1 2079 110 0 32 chr15 48554970 48555279 -52825242 - AluSx SINE Alu -13 299 1 1496 146 55 103 chr15 48555291 48555628 -52824893 - L1M4 LINE L1 -710 5474 5122 2013 159 0 0 chr15 48555628 48555924 -52824597 - AluJb SINE Alu -16 296 1 1481 199 10 7 chr15 48555928 48556219 -52824302 - AluJo SINE Alu -20 292 1 1496 146 55 103 chr15 48556219 48556503 -52824018 - L1M4 LINE L1 -1065 5119 4893 563 145 0 0 chr15 48556506 48556589 -52823932 + AluSg SINE Alu 1 83 -227 1940 147 7 7 chr15 48556936 48557228 -52823293 - AluSx SINE Alu -20 292 1 756 181 0 23 chr15 48557233 48557366 -52823155 - FLAM_A SINE Alu 0 133 4 1256 121 0 0 chr15 48557722 48557896 -52822625 - AluSq SINE Alu -3 310 137 1972 124 39 0 chr15 48557919 48558202 -52822319 + AluSq SINE Alu 1 294 -19 613 122 0 0 chr15 48558235 48558325 -52822196 + AluJ/FLAM SINE Alu 7 96 -216 * 711 183 8 15 chr15 48558320 48558451 -52822070 + FLAM_C SINE Alu 7 136 -7 319 328 57 26 chr15 48558507 48558736 -52821785 + MIR SINE MIR 1 236 -26 216 0 0 0 chr15 48558933 48558957 -52821564 + (T)n Simple_repeat Simple_repeat 1 24 0 1403 160 5 0 chr15 48558974 48559186 -52821335 - AluSx SINE Alu -77 235 23 2277 104 7 0 chr15 48559193 48559492 -52821029 - AluSp SINE Alu -11 302 2 2382 82 0 0 chr15 48560644 48560937 -52819584 - AluY SINE Alu -18 293 1 828 86 0 132 chr15 48561174 48561326 -52819195 + AluSq/x SINE Alu 3 134 -178 3235 129 168 22 chr15 48561443 48561967 -52818554 - L1MB7 LINE L1 -165 6019 5350 2267 108 0 10 chr15 48561967 48562272 -52818249 - AluSx SINE Alu -10 302 1 3235 129 168 22 chr15 48562272 48562482 -52818039 - L1MB7 LINE L1 -834 5350 5172 534 31 0 0 chr15 48562486 48562550 -52817971 + (ATTG)n Simple_repeat Simple_repeat 2 65 0 1072 197 0 0 chr15 48562550 48562728 -52817793 - AluSg/x SINE Alu -26 284 107 263 229 72 0 chr15 48562807 48562890 -52817631 + (TTGGGG)n Simple_repeat Simple_repeat 5 93 0 801 181 154 36 chr15 48563310 48563381 -52817140 - L1MB7 LINE L1 -1062 5084 5023 2255 90 0 0 chr15 48563381 48563659 -52816862 + AluSx SINE Alu 2 279 -33 801 181 154 36 chr15 48563659 48563808 -52816713 - L1MB7 LINE L1 -1123 5023 4838 632 242 33 13 chr15 48563815 48563968 -52816553 - MLT1F1 LTR MaLR -399 168 13 332 171 26 0 chr15 48564007 48564083 -52816438 + (CATA)n Simple_repeat Simple_repeat 3 80 0 1272 201 31 24 chr15 48564084 48564377 -52816144 - AluSq SINE Alu -18 295 1 1841 163 10 3 chr15 48564423 48564717 -52815804 + AluJb SINE Alu 1 296 -16 183 42 0 0 chr15 48564808 48564832 -52815689 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1955 130 4 0 chr15 48564836 48565112 -52815409 - AluSx SINE Alu -35 277 1 2358 252 159 30 chr15 48565498 48566785 -52813736 + L2 LINE L2 1524 2977 -337 1353 147 15 0 chr15 48566878 48567075 -52813446 - AluSg/x SINE Alu -47 265 66 522 212 134 37 chr15 48567089 48567306 -52813215 + L2 LINE L2 3076 3313 0 379 123 0 0 chr15 48567336 48567393 -52813128 - Alu SINE Alu -2 300 244 314 297 36 36 chr15 48567523 48567661 -52812860 - MIR3 SINE MIR -49 159 22 604 194 60 45 chr15 48568593 48568727 -52811794 - FLAM_C SINE Alu -6 137 2 810 139 0 0 chr15 48569414 48569522 -52810999 + FRAM SINE Alu 21 128 -48 200 360 0 11 chr15 48570187 48570276 -52810245 - MIR SINE MIR -114 148 61 232 143 0 0 chr15 48570312 48570347 -52810174 - Alu SINE Alu -268 35 1 1030 158 49 0 chr15 48570920 48571084 -52809437 + AluSg/x SINE Alu 118 289 -21 1458 108 205 46 chr15 48571370 48571629 -52808892 - AluSx SINE Alu -12 300 1 483 223 8 39 chr15 48572194 48572324 -52808197 + AluSg/x SINE Alu 170 295 -15 214 254 18 0 chr15 48572418 48572473 -52808048 + MER5B DNA MER1_type 122 177 -1 1759 144 31 14 chr15 48572617 48572908 -52807613 - AluSx SINE Alu -16 296 1 222 109 141 62 chr15 48573340 48573404 -52807117 + L2 LINE L2 3203 3271 -1 28 48 0 0 chr15 48575238 48575280 -52805241 + AT_rich Low_complexity Low_complexity 1 42 0 270 0 0 0 chr15 48576308 48576338 -52804183 + (TG)n Simple_repeat Simple_repeat 2 31 0 688 171 18 0 chr15 48576992 48577103 -52803418 - FRAM SINE Alu -39 137 25 404 167 0 0 chr15 48577105 48577171 -52803350 - L1M4 LINE L1 -1273 4873 4808 262 214 71 41 chr15 48577165 48577193 -52803328 - L1M4 LINE L1 -3757 2389 2363 * 1528 168 23 74 chr15 48577193 48577502 -52803019 - AluJo SINE Alu -18 294 2 262 214 71 41 chr15 48577502 48577571 -52802950 - L1M4 LINE L1 -3783 2363 2289 437 302 83 16 chr15 48577625 48577817 -52802704 - L1ME LINE L1 -456 5708 5504 346 259 71 9 chr15 48578453 48578565 -52801956 + MIR3 SINE MIR 15 133 -75 538 321 67 18 chr15 48579412 48579636 -52800885 + MIR SINE MIR 2 236 -26 938 233 155 13 chr15 48579968 48580285 -52800236 + L2 LINE L2 2440 2801 -513 794 257 119 41 chr15 48580343 48580445 -52800076 + L2 LINE L2 2919 3012 -301 1910 60 34 0 chr15 48580445 48580678 -52799843 + AluY SINE Alu 64 304 -7 794 257 119 41 chr15 48580678 48580937 -52799584 + L2 LINE L2 3012 3308 -5 2147 109 21 0 chr15 48582079 48582363 -52798158 - AluSx SINE Alu -22 290 1 1414 151 49 99 chr15 48582383 48582687 -52797834 - AluJo SINE Alu -12 290 2 2020 78 10 30 chr15 48582695 48582991 -52797530 - AluY SINE Alu -21 290 1 900 164 0 13 chr15 48583201 48583353 -52797168 - AluSq/x SINE Alu -163 150 1 201 279 0 0 chr15 48583432 48583475 -52797046 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 2127 116 7 3 chr15 48584000 48584310 -52796211 + AluSq SINE Alu 1 311 -2 278 238 87 79 chr15 48584312 48584438 -52796083 - L1ME4a LINE L1 -16 6105 5979 242 282 163 26 chr15 48584530 48584936 -52795585 - L1MC4a LINE L1 -105 6016 5603 345 261 72 18 chr15 48585158 48585269 -52795252 + L1MC4 LINE L1 6589 6705 -1337 1857 69 80 15 chr15 48585288 48585550 -52794971 - AluSg SINE Alu -31 279 1 1967 141 0 0 chr15 48585787 48586078 -52794443 - AluSx SINE Alu -21 291 1 797 179 11 27 chr15 48586091 48586275 -52794246 - L1MB8 LINE L1 -3 6175 5995 714 355 34 6 chr15 48586681 48587008 -52793513 - L2 LINE L2 -1094 2220 1885 1309 368 3 26 chr15 48587103 48587413 -52793108 - AluY SINE Alu -8 303 1 475 281 143 17 chr15 48587418 48587656 -52792865 + L2 LINE L2 2838 3105 -167 375 219 90 39 chr15 48588632 48588810 -52791711 - L1ME4a LINE L1 -1 6120 5934 477 254 9 86 chr15 48588949 48589169 -52791352 + L2 LINE L2 3079 3281 -32 248 229 16 0 chr15 48589169 48589230 -52791291 - L1MC4a LINE L1 -580 7228 7167 362 278 23 38 chr15 48589231 48589364 -52791157 - L1ME4a LINE L1 -279 5842 5712 326 183 0 0 chr15 48589974 48590034 -52790487 + MER53 DNA DNA 130 189 0 2009 120 3 3 chr15 48590124 48590415 -52790106 + AluSq SINE Alu 1 291 -22 705 231 106 10 chr15 48590502 48590701 -52789820 + L1MC5 LINE L1 6649 6866 -1095 436 241 8 15 chr15 48590735 48590868 -52789653 + L1MC5 LINE L1 7782 7913 -48 210 154 0 0 chr15 48590998 48591037 -52789484 + (TA)n Simple_repeat Simple_repeat 1 39 0 1790 117 4 0 chr15 48591039 48591296 -52789225 - AluSx SINE Alu -31 281 24 386 392 83 15 chr15 48591460 48591825 -52788696 + HAL1 LINE L1 921 1302 -1205 2220 78 6 34 chr15 48592118 48592440 -52788081 + AluSp SINE Alu 1 313 0 1993 135 3 0 chr15 48593245 48593548 -52786973 - AluSx SINE Alu -8 304 1 2167 94 0 7 chr15 48594524 48594821 -52785700 + AluSp SINE Alu 1 295 -18 2138 85 27 0 chr15 48594826 48595120 -52785401 + AluSp SINE Alu 1 302 -11 348 261 42 25 chr15 48595345 48595505 -52785016 - MLT1J LTR MaLR -279 336 111 343 339 63 19 chr15 48595794 48596030 -52784491 + MIR SINE MIR 15 256 -6 3431 135 47 27 chr15 48596055 48596085 -52784436 + LTR26 LTR ERV1 1 29 -574 2151 86 0 0 chr15 48596085 48596393 -52784128 + AluY SINE Alu 1 308 0 3431 135 47 27 chr15 48596393 48596952 -52783569 + LTR26 LTR ERV1 29 603 0 303 281 151 69 chr15 48596957 48597274 -52783247 + MLT1K LTR MaLR 7 349 -239 389 214 0 0 chr15 48597569 48597639 -52782882 + MER8 DNA MER2_type 160 229 -10 315 270 32 24 chr15 48597736 48597862 -52782659 + L2 LINE L2 2004 2130 -1184 2001 119 24 0 chr15 48597925 48598218 -52782303 - AluSx SINE Alu -12 300 1 1264 275 172 22 chr15 48598242 48599021 -52781500 + L2 LINE L2 2346 3235 -78 4087 237 69 74 chr15 48599810 48600719 -52779802 + HAL1 LINE L1 656 1568 -939 652 55 44 0 chr15 48600719 48600810 -52779711 + L1PB1 LINE L1 6056 6150 -1 4087 237 69 74 chr15 48600810 48601616 -52778905 + HAL1 LINE L1 1568 2364 -143 1881 116 4 0 chr15 48601616 48601893 -52778628 + AluY SINE Alu 33 310 -1 4087 237 69 74 chr15 48601893 48601983 -52778538 + HAL1 LINE L1 2364 2453 -54 280 282 45 9 chr15 48602245 48602355 -52778166 + MER5B DNA MER1_type 11 124 -54 2160 121 0 0 chr15 48602356 48602663 -52777858 - AluSx SINE Alu -5 307 1 1696 94 12 16 chr15 48602672 48602927 -52777594 - AluY SINE Alu -3 308 55 856 201 0 66 chr15 48602933 48603206 -52777315 - AluY SINE Alu -12 299 45 520 213 43 111 chr15 48604395 48604630 -52775891 - AluY SINE Alu -91 220 2 184 156 16 219 chr15 48604685 48604704 -52775817 - MER5B DNA MER1_type -125 53 32 1910 123 0 66 chr15 48604704 48605036 -52775485 + AluSx SINE Alu 1 310 -2 184 156 16 219 chr15 48605036 48605080 -52775441 - MER5B DNA MER1_type -146 32 3 215 241 103 0 chr15 48605958 48606016 -52774505 - MIR SINE MIR -4 258 195 233 273 0 0 chr15 48607222 48607277 -52773244 + L1MB7 LINE L1 5512 5566 -618 2936 180 55 2 chr15 48607813 48608395 -52772126 + L1MB7 LINE L1 5553 6165 -19 2076 125 0 3 chr15 48608442 48608745 -52771776 - AluSx SINE Alu -10 302 1 1789 113 132 0 chr15 48608787 48609053 -52771468 + AluSx SINE Alu 1 301 -1 332 136 136 0 chr15 48609884 48609943 -52770578 + L1MC4 LINE L1 6771 6837 -1205 * 422 171 57 26 chr15 48609942 48610072 -52770449 - L1MC4 LINE L1 -806 7036 6873 2317 36 0 4 chr15 48611001 48611321 -52769200 + AluY SINE Alu 1 319 0 196 315 0 0 chr15 48611795 48611849 -52768672 - MIR SINE MIR -63 145 92 611 241 49 38 chr15 48611948 48612214 -52768307 - AluSc SINE Alu -7 302 34 587 147 0 92 chr15 48613428 48613504 -52767017 - AluY SINE Alu -111 200 135 2108 107 0 3 chr15 48613504 48613802 -52766719 - AluSg SINE Alu -13 297 1 587 147 0 92 chr15 48613802 48613834 -52766687 - AluY SINE Alu -176 135 102 1685 184 19 0 chr15 48614108 48614423 -52766098 + MER73 LTR ERVL 324 644 0 1757 158 20 13 chr15 48614590 48614894 -52765627 + AluJb SINE Alu 1 306 -6 289 317 118 0 chr15 48614895 48615057 -52765464 + MIR SINE MIR 8 197 -65 983 92 0 0 chr15 48615239 48615369 -52765152 - AluSg SINE Alu -180 130 1 767 235 235 22 chr15 48615731 48615887 -52764634 + L2 LINE L2 1317 1438 -1876 939 189 44 84 chr15 48615887 48616136 -52764385 + MER8 DNA MER2_type 1 239 0 767 235 235 22 chr15 48616136 48616302 -52764219 + L2 LINE L2 1438 1708 -1606 1093 133 0 12 chr15 48616316 48616489 -52764032 + AluJo SINE Alu 1 171 -141 1575 151 4 11 chr15 48616804 48617082 -52763439 + AluSx SINE Alu 28 303 -9 235 210 0 32 chr15 48617082 48617144 -52763377 + L1MC5 LINE L1 7848 7907 -54 1058 246 47 19 chr15 48617153 48617474 -52763047 + L2 LINE L2 1698 2027 -1287 1650 132 0 83 chr15 48617825 48617995 -52762526 - AluJb SINE Alu -12 300 168 1783 148 10 3 chr15 48617995 48618286 -52762235 - AluJb SINE Alu -19 293 1 1650 132 0 83 chr15 48618286 48618442 -52762079 - AluJb SINE Alu -144 168 1 297 228 54 33 chr15 48618503 48618595 -52761926 - L2 LINE L2 -40 3232 3139 458 120 13 13 chr15 48618758 48618833 -52761688 - AluSg/x SINE Alu -30 280 206 574 117 0 0 chr15 48619164 48619241 -52761280 - AluSg/x SINE Alu -30 279 203 810 83 9 0 chr15 48619317 48619426 -52761095 + L1PA8A LINE L1 5994 6103 -28 2190 93 0 16 chr15 48619566 48619879 -52760642 + AluSx SINE Alu 1 308 -4 402 309 40 13 chr15 48621247 48621396 -52759125 - MLT1K LTR MaLR -418 170 18 873 110 39 0 chr15 48621538 48621665 -52758856 + AluJb SINE Alu 1 132 -180 836 193 20 0 chr15 48621733 48621883 -52758638 - AluSg/x SINE Alu -39 273 121 731 180 16 0 chr15 48621937 48622059 -52758462 - AluJb SINE Alu -187 125 2 1930 116 0 0 chr15 48622068 48622336 -52758185 - AluSx SINE Alu -24 288 21 454 318 127 45 chr15 48622740 48622761 -52757760 + L1MC4a LINE L1 5463 5481 -2327 1938 125 28 0 chr15 48622761 48623050 -52757471 + AluSx SINE Alu 1 297 -15 454 318 127 45 chr15 48623050 48623468 -52757053 + L1MC4a LINE L1 5481 5938 -1870 2102 110 3 0 chr15 48624870 48625162 -52755359 - AluSq SINE Alu -20 293 1 1822 109 42 0 chr15 48625484 48625603 -52754918 + AluSc SINE Alu 1 114 -195 405 0 0 0 chr15 48625603 48625648 -52754873 + (CA)n Simple_repeat Simple_repeat 2 46 0 1822 109 42 0 chr15 48625648 48625812 -52754709 + AluSc SINE Alu 114 296 -13 33 0 0 0 chr15 48627235 48627268 -52753253 + GC_rich Low_complexity Low_complexity 1 33 0 1911 57 0 8 chr15 48627409 48627656 -52752865 - AluY SINE Alu -66 245 1 422 143 4 0 chr15 48627659 48627734 -52752787 + LTR41 LTR ERVL 453 523 0 427 254 64 0 chr15 48627747 48627857 -52752664 + HERVL LTR ERVL 2854 2970 -2684 2041 173 9 6 chr15 48627861 48628207 -52752314 - MLT1A1 LTR MaLR 0 365 19 4459 264 68 6 chr15 48628216 48629410 -52751111 + HERVL LTR ERVL 3008 4275 -1489 596 204 46 0 chr15 48629447 48629599 -52750922 + LTR37A LTR ERV1 268 426 0 669 263 105 0 chr15 48629770 48629941 -52750580 + MIR SINE MIR 48 236 -26 2388 181 99 0 chr15 48630114 48630600 -52749921 - L1MB7 LINE L1 -2 6182 5649 1586 113 77 18 chr15 48630885 48631015 -52749506 - L1MA5 LINE L1 -4 6296 6175 2554 133 24 42 chr15 48631015 48631342 -52749179 + MER65A LTR ERV1 1 319 -126 2219 88 0 22 chr15 48631342 48631659 -52748862 - AluY SINE Alu -1 310 1 2554 133 24 42 chr15 48631659 48631784 -52748737 + MER65A LTR ERV1 319 445 0 1586 113 77 18 chr15 48631784 48631927 -52748594 - L1MA5 LINE L1 -125 6175 6007 1042 172 67 50 chr15 48632692 48632930 -52747591 + Charlie1 DNA MER1_type 1 242 -2519 736 133 15 52 chr15 48632922 48633016 -52747505 + Charlie1 DNA MER1_type 2631 2720 -41 * 2224 79 3 7 chr15 48633016 48633320 -52747201 + AluSp SINE Alu 1 303 -10 736 133 15 52 chr15 48633320 48633360 -52747161 + Charlie1 DNA MER1_type 2720 2760 -1 426 305 0 58 chr15 48633427 48633617 -52746904 + G-rich Low_complexity Low_complexity 1 179 0 305 258 0 43 chr15 48633624 48633749 -52746772 + G-rich Low_complexity Low_complexity 1 119 0 1986 82 27 14 chr15 48635443 48635735 -52744786 - AluY SINE Alu -15 296 1 277 252 36 108 chr15 48636695 48636787 -52743734 + MER110 LTR ERV1 363 443 -48 2164 110 0 0 chr15 48636787 48637086 -52743435 - AluSx SINE Alu -13 299 1 277 252 36 108 chr15 48637086 48637132 -52743389 + MER110 LTR ERV1 443 491 0 234 91 0 0 chr15 48637249 48637282 -52743239 + (A)n Simple_repeat Simple_repeat 1 33 0 376 279 121 55 chr15 48637406 48637571 -52742950 - L3 LINE CR1 -2 1575 1400 233 290 65 28 chr15 48637952 48638059 -52742462 - L2 LINE L2 0 3272 3162 294 280 0 40 chr15 48638253 48638353 -52742168 - L2 LINE L2 -240 3032 2937 2095 105 3 0 chr15 48638529 48638815 -52741706 - AluSx SINE Alu -14 298 12 514 249 226 20 chr15 48639567 48639969 -52740552 - L1ME4a LINE L1 0 6121 5637 2256 62 3 7 chr15 48640050 48640341 -52740180 - AluY SINE Alu -21 290 1 2107 100 7 10 chr15 48641433 48641734 -52738787 - AluSq SINE Alu -13 300 1 256 236 87 31 chr15 48641908 48642035 -52738486 - L1ME4a LINE L1 -2362 5423 5290 301 301 7 52 chr15 48642089 48642242 -52738279 - L1ME4a LINE L1 -889 5257 5112 456 281 148 36 chr15 48642318 48642621 -52737900 + L1ME4a LINE L1 5562 5898 -223 637 274 73 36 chr15 48643202 48643450 -52737071 + MIR SINE MIR 6 262 0 2218 114 0 0 chr15 48643582 48643889 -52736632 - AluSx SINE Alu -1 311 5 389 206 116 48 chr15 48644398 48644544 -52735977 + MER20 DNA MER1_type 63 218 -1 582 198 60 0 chr15 48644560 48644676 -52735845 + MLT1J LTR MaLR 71 193 -318 287 244 154 8 chr15 48645321 48645444 -52735077 - L2 LINE L2 -188 3084 2944 2137 113 0 0 chr15 48645463 48645763 -52734758 - AluSx SINE Alu -12 300 1 1554 144 29 122 chr15 48645789 48646165 -52734356 - MER2 DNA MER2_type -3 341 1 293 247 58 98 chr15 48646505 48646679 -52733842 + L2 LINE L2 2250 2416 -898 1192 217 44 20 chr15 48646684 48646979 -52733542 + LTR40b LTR ERVL 161 462 0 336 333 52 0 chr15 48646979 48647114 -52733407 + L2 LINE L2 2555 2696 -618 1256 152 68 27 chr15 48647115 48647378 -52733143 - AluJb SINE Alu 0 312 39 207 145 26 171 chr15 48647378 48647454 -52733067 + L2 LINE L2 2687 2751 -563 898 232 201 14 chr15 48647495 48647788 -52732733 + L2 LINE L2 2966 3313 0 217 321 66 0 chr15 48648657 48648763 -52731758 + MIR SINE MIR 30 142 -66 181 186 169 17 chr15 48649633 48649692 -52730829 - MIR SINE MIR -123 85 18 378 0 0 0 chr15 48650496 48650538 -52729983 + (CA)n Simple_repeat Simple_repeat 2 43 0 827 65 8 0 chr15 48650708 48650831 -52729690 + (CA)n Simple_repeat Simple_repeat 2 125 0 350 205 60 25 chr15 48651099 48651224 -52729297 - MER5A DNA MER1_type -53 125 4 247 296 70 43 chr15 48651342 48651457 -52729064 - L2 LINE L2 -9 3263 3146 1456 171 32 3 chr15 48651465 48651903 -52728618 + MER110 LTR ERV1 1 484 -7 241 177 65 0 chr15 48651987 48652049 -52728472 - L2 LINE L2 -241 3031 2966 197 288 68 0 chr15 48652141 48652200 -52728321 - L2 LINE L2 -567 2747 2685 1980 107 0 0 chr15 48652788 48653059 -52727462 + AluSx SINE Alu 29 299 -13 603 224 69 65 chr15 48653803 48653818 -52726703 - MIR SINE MIR 0 262 249 1603 161 0 47 chr15 48653818 48654143 -52726378 + AluJo SINE Alu 1 311 0 603 224 69 65 chr15 48654143 48654372 -52726149 - MIR SINE MIR -13 249 16 718 116 20 116 chr15 48656090 48656237 -52724284 - FLAM_C SINE Alu 0 133 1 2112 281 120 30 chr15 48656239 48657387 -52723134 - L1MC4 LINE L1 -7 8035 6785 2112 124 0 0 chr15 48657531 48657837 -52722684 + AluSx SINE Alu 1 306 -6 187 333 12 48 chr15 48658081 48658165 -52722356 + L2 LINE L2 3191 3271 -1 1520 253 61 74 chr15 48659163 48659738 -52720783 + MER77 LTR ERV1 60 601 -4 23 54 0 0 chr15 48659862 48659899 -52720622 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr15 48659992 48660014 -52720507 + AT_rich Low_complexity Low_complexity 1 22 0 352 265 52 73 chr15 48660015 48660287 -52720234 + AluJb SINE Alu 1 266 -36 2398 52 0 10 chr15 48661235 48661540 -52718981 - AluY SINE Alu -9 302 1 364 154 7 13 chr15 48661588 48661660 -52718861 - MER110 LTR ERV1 -388 103 1 707 293 27 23 chr15 48661752 48661839 -52718682 - L1ME LINE L1 -302 5819 5734 1591 170 6 56 chr15 48661839 48662162 -52718359 - AluJb SINE Alu -3 309 3 707 293 27 23 chr15 48662162 48662374 -52718147 - L1ME LINE L1 -387 5734 5519 809 148 7 0 chr15 48662443 48662578 -52717943 - FLAM_A SINE Alu -1 141 6 2090 120 13 0 chr15 48662864 48663164 -52717357 - AluSx SINE Alu -8 304 1 199 327 20 50 chr15 48663708 48663809 -52716712 - MIR SINE MIR -68 140 43 233 290 43 11 chr15 48666127 48666220 -52714301 - MARNA DNA Mariner -211 375 280 822 204 80 6 chr15 48667093 48667269 -52713252 + AluJb SINE Alu 122 310 -2 2110 96 0 23 chr15 48667608 48667909 -52712612 - AluSx SINE Alu -18 294 1 1654 144 40 18 chr15 48667920 48668198 -52712323 - AluJb SINE Alu -17 295 12 1661 217 137 19 chr15 48668291 48668774 -52711747 + MLT1F LTR MaLR 1 540 -2 353 252 113 17 chr15 48669743 48669858 -52710663 - MIR SINE MIR -63 145 20 186 343 27 0 chr15 48670278 48670351 -52710170 - MIR3 SINE MIR -26 182 108 3139 226 139 12 chr15 48670713 48671644 -52708877 - L1MC4 LINE L1 -191 7851 6803 1710 149 6 50 chr15 48671734 48672055 -52708466 + AluJb SINE Alu 1 307 -5 2379 60 0 3 chr15 48672219 48672520 -52708001 - AluY SINE Alu -11 300 1 2096 106 3 0 chr15 48672535 48672828 -52707693 - AluSg SINE Alu -16 294 1 339 353 43 22 chr15 48673446 48673585 -52706936 + MIR SINE MIR 8 149 -113 187 298 21 0 chr15 48673642 48673689 -52706832 + L2 LINE L2 3266 3313 0 219 313 101 76 chr15 48674083 48674371 -52706150 - L2 LINE L2 -49 3223 2929 233 318 27 18 chr15 48674525 48674635 -52705886 - L2 LINE L2 -582 2732 2622 505 302 23 23 chr15 48674962 48675227 -52705294 - L1 LINE L1 -2015 4131 3867 1016 185 70 70 chr15 48675233 48675535 -52704986 - AluSx SINE Alu 0 302 1 190 298 124 41 chr15 48675790 48675911 -52704610 + MIR SINE MIR 98 228 -34 280 245 185 20 chr15 48676113 48676264 -52704257 - L1ME4a LINE L1 -11 6110 5935 297 253 60 0 chr15 48676341 48676424 -52704097 - L1ME4a LINE L1 -298 5823 5736 387 195 11 11 chr15 48676454 48676541 -52703980 - L1ME4a LINE L1 -458 5663 5577 362 219 171 11 chr15 48676541 48676683 -52703838 - MIR SINE MIR -5 257 83 834 244 0 30 chr15 48677038 48677268 -52703253 - AluSx SINE Alu -89 223 1 831 50 0 0 chr15 48678423 48678523 -52701998 + HY3 scRNA scRNA 1 100 -1 20110 163 30 33 chr15 48678564 48679608 -52700913 + L1PA11 LINE L1 7 1053 -6559 2087 102 0 22 chr15 48679608 48679923 -52700598 + AluSg SINE Alu 1 308 -2 2107 92 0 31 chr15 48679924 48680241 -52700280 + AluY SINE Alu 2 308 -3 20110 163 30 33 chr15 48680241 48683067 -52697454 + L1PA11 LINE L1 1053 3886 -3726 2223 112 0 3 chr15 48683067 48683379 -52697142 + AluSq SINE Alu 1 311 -2 20110 163 30 33 chr15 48683379 48684721 -52695800 + L1PA11 LINE L1 3886 5230 -2382 1910 129 58 0 chr15 48684721 48684973 -52695548 + AluSx SINE Alu 1 274 -38 2090 98 0 4 chr15 48684973 48685248 -52695273 + AluSq SINE Alu 40 313 0 1910 129 58 0 chr15 48685248 48685290 -52695231 + AluSx SINE Alu 274 312 0 20110 163 30 33 chr15 48685290 48686401 -52694120 + L1PA11 LINE L1 5230 7612 0 1920 133 44 0 chr15 48686503 48686796 -52693725 + AluSx SINE Alu 1 306 -6 295 269 118 54 chr15 48686807 48687138 -52693383 + L1ME4a LINE L1 5723 6074 -47 1670 162 56 40 chr15 48687806 48688108 -52692413 - AluJo SINE Alu -5 307 1 1835 125 55 4 chr15 48688178 48688450 -52692071 + AluJo SINE Alu 2 287 -25 604 264 92 75 chr15 48688698 48688934 -52691587 - L2 LINE L2 -5 3308 3077 759 118 17 8 chr15 48688934 48689053 -52691468 - FLAM_C SINE Alu -12 121 2 604 264 92 75 chr15 48689053 48689308 -52691213 - L2 LINE L2 -236 3077 2809 207 304 20 59 chr15 48689395 48689497 -52691024 + MIR SINE MIR 55 152 -56 1764 151 133 3 chr15 48689571 48689916 -52690605 + MLT1D LTR MaLR 1 390 -115 336 241 18 107 chr15 48690071 48690139 -52690382 + MER81 DNA DNA 13 70 -44 1902 134 33 0 chr15 48690139 48690439 -52690082 + AluSx SINE Alu 1 309 0 336 241 18 107 chr15 48690439 48690481 -52690040 + MER81 DNA DNA 70 114 0 561 71 0 24 chr15 48691458 48691543 -52688978 - AluSg1 SINE Alu -216 93 11 2173 123 23 0 chr15 48691596 48691897 -52688624 + AluSx SINE Alu 1 308 -4 403 221 62 0 chr15 48692402 48692515 -52688006 + MIR SINE MIR 42 161 -101 284 31 0 0 chr15 48692523 48692555 -52687966 - AluSq/x SINE Alu -195 107 76 * 409 261 140 76 chr15 48692553 48692862 -52687659 + MLT1J LTR MaLR 240 473 -38 212 227 0 0 chr15 48693889 48693933 -52686588 + (CCG)n Simple_repeat Simple_repeat 2 45 0 21 95 0 0 chr15 48694151 48694214 -52686307 + GC_rich Low_complexity Low_complexity 1 63 0 264 316 0 0 chr15 48694355 48694453 -52686068 - MIR SINE MIR -118 144 47 658 229 45 15 chr15 48694984 48695185 -52685336 - MIR SINE MIR -21 241 35 281 236 42 0 chr15 48695474 48695546 -52684975 + MIR SINE MIR 118 192 -70 2290 105 20 0 chr15 48695554 48695860 -52684661 + AluSx SINE Alu 1 312 0 210 200 17 67 chr15 48696005 48696065 -52684456 + L2 LINE L2 3216 3272 0 24 0 0 0 chr15 48696065 48696089 -52684432 + AT_rich Low_complexity Low_complexity 1 24 0 205 235 12 24 chr15 48696104 48696189 -52684332 + (TAAA)n Simple_repeat Simple_repeat 1 84 0 352 235 144 23 chr15 48696219 48696351 -52684170 + MIR SINE MIR 4 151 -111 1813 125 0 4 chr15 48697471 48697719 -52682802 + AluSx SINE Alu 1 247 -65 362 43 0 0 chr15 48697723 48697769 -52682752 - MADE1 DNA Mariner -34 46 1 577 287 57 29 chr15 48698780 48699024 -52681497 - MIR SINE MIR -10 252 2 347 230 213 23 chr15 48699869 48700043 -52680478 + MIR SINE MIR 8 214 -48 2257 138 27 41 chr15 48700343 48700453 -52680068 + LTR56 LTR ERV1 17 127 -310 1982 135 7 0 chr15 48700453 48700778 -52679743 - AluSx SINE Alu 0 327 1 2257 138 27 41 chr15 48700778 48701114 -52679407 + LTR56 LTR ERV1 127 431 -6 258 232 71 10 chr15 48702520 48702619 -52677902 - L1MC/D LINE L1 -2003 5805 5701 768 159 16 104 chr15 48702635 48702817 -52677704 + L1MC/D LINE L1 5511 5676 -508 2012 118 62 0 chr15 48702818 48703106 -52677415 + AluSx SINE Alu 1 306 -6 470 238 107 42 chr15 48703106 48703367 -52677154 - L2 LINE L2 -361 2953 2676 297 316 60 8 chr15 48703759 48703876 -52676645 - MIR SINE MIR -111 151 29 1614 183 25 82 chr15 48703979 48704409 -52676112 + L1MB7 LINE L1 5762 6167 -17 2460 80 0 0 chr15 48704409 48704708 -52675813 - AluY SINE Alu -12 299 1 1614 183 25 82 chr15 48704708 48704726 -52675795 + L1MB7 LINE L1 6167 6184 0 1289 231 106 60 chr15 48704722 48705242 -52675279 + L1ME3 LINE L1 5319 5862 -300 * 21 100 0 0 chr15 48705371 48705441 -52675080 + AT_rich Low_complexity Low_complexity 1 70 0 22 0 0 0 chr15 48707144 48707166 -52673355 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr15 48707232 48707274 -52673247 + AT_rich Low_complexity Low_complexity 1 42 0 2431 73 3 10 chr15 48707324 48707626 -52672895 + AluSc SINE Alu 1 300 -9 856 108 129 217 chr15 48708709 48709280 -52671241 - Charlie1 DNA MER1_type -4 2757 1 1721 138 17 54 chr15 48710102 48710400 -52670121 - AluJo SINE Alu -25 287 1 250 87 22 43 chr15 48710880 48710926 -52669595 + MIR3 SINE MIR 120 164 -44 275 206 137 0 chr15 48711219 48711292 -52669229 + MIR SINE MIR 37 119 -89 3355 151 27 63 chr15 48711297 48711927 -52668594 + L1MB8 LINE L1 5504 6108 -70 2085 124 3 13 chr15 48711927 48712225 -52668296 - AluSx SINE Alu -17 295 1 3355 151 27 63 chr15 48712225 48712294 -52668227 + L1MB8 LINE L1 6108 6178 0 199 238 0 0 chr15 48712298 48712340 -52668181 + MIR3 SINE MIR 145 186 -22 2173 115 7 7 chr15 48712340 48712636 -52667885 + AluSq SINE Alu 1 296 -17 2248 112 0 0 chr15 48712842 48713169 -52667352 - AluSg SINE Alu 0 310 1 2394 69 3 7 chr15 48713178 48713483 -52667038 - AluY SINE Alu -7 304 1 1964 123 11 0 chr15 48714575 48714836 -52665685 + AluSq SINE Alu 1 264 -49 207 0 0 0 chr15 48714838 48714861 -52665660 + (TAA)n Simple_repeat Simple_repeat 2 24 0 4894 210 63 33 chr15 48714875 48716378 -52664143 + L1MDa LINE L1 1012 2559 -3981 316 100 0 0 chr15 48716402 48716442 -52664079 + FLAM SINE Alu 85 124 -9 1755 101 0 4 chr15 48716456 48716684 -52663837 + AluSg/x SINE Alu 73 299 -13 3085 69 13 38 chr15 48717159 48717208 -52663313 - L1MA1 LINE L1 -4 6298 6249 2080 128 0 10 chr15 48717208 48717513 -52663008 - AluSx SINE Alu -10 302 1 3085 69 13 38 chr15 48717513 48717627 -52662894 - L1MA1 LINE L1 -53 6249 6134 2395 97 7 0 chr15 48717627 48717935 -52662586 - AluSx SINE Alu -2 310 1 3085 69 13 38 chr15 48717935 48718217 -52662304 - L1MA1 LINE L1 -168 6134 5863 1498 187 34 83 chr15 48720669 48721076 -52659445 + MLT1B LTR MaLR 1 387 -3 2352 107 3 3 chr15 48721141 48721451 -52659070 + AluSx SINE Alu 1 310 -2 904 260 163 7 chr15 48721889 48722346 -52658175 + L1ME LINE L1 5051 5576 -588 186 289 70 61 chr15 48722560 48722674 -52657847 - MIR3 SINE MIR -6 202 88 2024 156 0 0 chr15 48724258 48724553 -52655968 - AluJb SINE Alu -17 295 1 287 259 52 21 chr15 48725361 48725521 -52655000 + MLT1J LTR MaLR 245 470 -41 750 220 147 0 chr15 48727161 48727352 -52653169 + MER20 DNA MER1_type 1 219 0 641 126 19 3 chr15 48727967 48728083 -52652438 - MLT1D LTR MaLR 0 505 403 2034 159 27 22 chr15 48729038 48729447 -52651074 - L1MB7 LINE L1 0 6184 5774 1106 250 91 77 chr15 48729951 48730516 -52650005 - L1ME4a LINE L1 -78 6043 5466 1620 171 28 21 chr15 48730516 48730802 -52649719 - AluJo SINE Alu -24 288 1 1106 250 91 77 chr15 48730802 48730876 -52649645 - L1ME4a LINE L1 -655 5466 5395 1434 206 99 32 chr15 48730974 48731407 -52649114 + MLT1C LTR MaLR 6 467 0 180 0 0 0 chr15 48731788 48731808 -52648713 + (CAAGG)n Simple_repeat Simple_repeat 3 22 0 1460 119 50 0 chr15 48734209 48734427 -52646094 + MER30 DNA MER1_type 2 230 0 864 214 69 62 chr15 48734456 48734636 -52645885 + MER102a DNA MER1_type 40 224 -1193 1625 170 0 58 chr15 48734636 48734826 -52645695 - AluJb SINE Alu -6 306 152 1969 134 10 26 chr15 48734826 48735131 -52645390 + AluSq SINE Alu 1 300 -13 1625 170 0 58 chr15 48735131 48735264 -52645257 - AluJb SINE Alu -160 152 13 864 214 69 62 chr15 48735264 48735372 -52645149 + MER102a DNA MER1_type 224 330 0 2514 124 0 16 chr15 48736153 48736525 -52643996 + MER47A DNA MER2_type 1 366 0 375 342 120 25 chr15 48736656 48737171 -52643350 - L2 LINE L2 -1178 2136 1564 2053 95 46 0 chr15 48737171 48737456 -52643065 + AluSg SINE Alu 1 298 -12 375 342 120 25 chr15 48737456 48737489 -52643032 - L2 LINE L2 -1750 1564 1536 2040 117 0 0 chr15 48738320 48738624 -52641897 + AluSx SINE Alu 1 304 0 1578 170 18 0 chr15 48738627 48738904 -52641617 + L1MC1 LINE L1 6046 6327 -6 354 313 0 0 chr15 48739554 48739666 -52640855 + (CCAA)n Simple_repeat Simple_repeat 4 115 0 2215 108 0 0 chr15 48740088 48740385 -52640136 + AluSq SINE Alu 1 297 -16 228 241 86 0 chr15 48740881 48740939 -52639582 - MIR SINE MIR -44 218 156 1994 101 11 14 chr15 48741181 48741468 -52639053 + AluSq SINE Alu 1 286 -27 803 87 0 0 chr15 48741582 48741686 -52638835 - AluY SINE Alu -207 104 1 211 308 13 13 chr15 48741893 48741971 -52638550 - MIR3 SINE MIR -22 186 109 2347 68 0 0 chr15 48742337 48742630 -52637891 - AluSg SINE Alu -16 294 2 825 168 68 6 chr15 48742688 48742915 -52637606 - L1MA7 LINE L1 -2 6310 6064 1754 141 4 0 chr15 48743532 48743808 -52636713 + AluJo SINE Alu 1 277 -35 2078 91 7 29 chr15 48744583 48744892 -52635629 - AluSq SINE Alu -5 308 7 2203 103 0 0 chr15 48745016 48745317 -52635204 - AluSx SINE Alu -11 301 1 692 145 11 34 chr15 48746296 48746475 -52634046 + GA-rich Low_complexity Low_complexity 3 177 0 211 218 13 39 chr15 48746499 48746577 -52633944 + A-rich Low_complexity Low_complexity 3 78 0 23 24 0 24 chr15 48747171 48747193 -52633328 + AT_rich Low_complexity Low_complexity 1 23 -17 2764 6 0 6 chr15 48747193 48747506 -52633015 + AluYa5 SINE Alu 1 311 0 23 24 0 24 chr15 48747506 48747524 -52632997 + AT_rich Low_complexity Low_complexity 23 40 0 1096 180 23 18 chr15 48747558 48747775 -52632746 - MER20 DNA MER1_type 0 219 2 194 389 0 14 chr15 48749454 48749526 -52630995 + MER5B DNA MER1_type 13 83 -95 189 329 49 0 chr15 48749559 48749641 -52630880 + MER5A DNA MER1_type 83 168 -21 2158 98 0 7 chr15 48750587 48750893 -52629628 + AluSx SINE Alu 1 304 -8 221 265 44 0 chr15 48750996 48751064 -52629457 - MIR SINE MIR -72 190 120 451 301 83 23 chr15 48751071 48751277 -52629244 - MIR SINE MIR -32 230 16 2349 144 8 11 chr15 48752104 48752485 -52628036 + MLT1B LTR MaLR 11 390 0 207 0 0 0 chr15 48752815 48752838 -52627683 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 390 46 2 37 chr15 48752845 48752906 -52627615 - AluY SINE Alu -14 286 235 207 0 0 0 chr15 48753365 48753388 -52627133 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1865 118 0 7 chr15 48753395 48753684 -52626837 - AluY SINE Alu -24 287 1 2135 108 3 0 chr15 48753689 48753994 -52626527 - AluSp SINE Alu -7 306 1 259 258 103 10 chr15 48754050 48754147 -52626374 - MER91A DNA MER1_type 0 196 91 620 272 40 29 chr15 48754147 48754320 -52626201 - MER91A DNA MER1_type -20 176 2 219 139 0 0 chr15 48754935 48754971 -52625550 + (T)n Simple_repeat Simple_repeat 1 36 0 814 134 15 15 chr15 48755033 48755167 -52625354 + AluJo SINE Alu 2 135 -177 1404 179 6 85 chr15 48755167 48755497 -52625024 + AluJb SINE Alu 1 304 -8 207 0 0 0 chr15 48755915 48755938 -52624583 + (TG)n Simple_repeat Simple_repeat 1 23 0 863 154 0 27 chr15 48755945 48756094 -52624427 - FRAM SINE Alu -30 146 2 436 221 159 0 chr15 48756706 48756819 -52623702 + MER58B DNA MER1_type 211 341 0 230 304 70 97 chr15 48756921 48757178 -52623343 - L2 LINE L2 -198 3074 2825 397 267 67 8 chr15 48757188 48757308 -52623213 - L2 LINE L2 0 3313 3187 279 355 121 27 chr15 48760563 48760901 -52619620 - L3 LINE CR1 -22 1555 1186 1495 161 7 21 chr15 48762481 48762791 -52617730 - AluJo SINE Alu 0 306 1 186 224 155 0 chr15 48762792 48762850 -52617671 - L3 LINE CR1 -824 753 687 32 57 0 0 chr15 48763150 48763203 -52617318 + AT_rich Low_complexity Low_complexity 1 53 0 684 189 14 14 chr15 48763942 48764090 -52616431 - AluSg/x SINE Alu 0 312 165 1997 119 0 3 chr15 48765317 48765641 -52614880 - AluSx SINE Alu 0 323 1 297 169 0 28 chr15 48765713 48765784 -52614737 - L1MA7 LINE L1 -2 6289 6221 229 31 0 0 chr15 48766137 48766169 -52614352 + Alu SINE Alu 104 135 -168 2200 92 0 3 chr15 48766169 48766464 -52614057 + AluSg SINE Alu 1 294 -16 246 62 0 0 chr15 48767657 48767689 -52612832 + (GGGTG)n Simple_repeat Simple_repeat 3 34 0 218 203 0 17 chr15 48768309 48768368 -52612153 + GA-rich Low_complexity Low_complexity 3 60 0 393 267 161 37 chr15 48768733 48768763 -52611758 - MIR SINE MIR -79 183 158 503 96 0 24 chr15 48768763 48768846 -52611675 - L1MA4 LINE L1 -4 6296 6216 393 267 161 37 chr15 48768846 48768976 -52611545 - MIR SINE MIR -104 158 3 265 310 23 23 chr15 48769461 48769548 -52610973 + L2 LINE L2 3186 3272 0 326 294 118 87 chr15 48769671 48770062 -52610459 - L2 LINE L2 -4 3268 2866 234 0 0 0 chr15 48770238 48770264 -52610257 + (CA)n Simple_repeat Simple_repeat 2 27 0 469 304 114 5 chr15 48770607 48770808 -52609713 - MIR SINE MIR -16 246 24 470 205 27 9 chr15 48771071 48771183 -52609338 - Charlie8 DNA MER1_type -2184 233 120 292 281 157 38 chr15 48771269 48771479 -52609042 - MIR SINE MIR -15 247 13 372 336 130 0 chr15 48771962 48772108 -52608413 - MIR SINE MIR -78 184 20 215 278 113 31 chr15 48772687 48772784 -52607737 + L2 LINE L2 3132 3236 -36 2287 97 0 0 chr15 48772814 48773125 -52607396 + AluY SINE Alu 1 311 0 328 291 166 40 chr15 48774158 48774333 -52606188 + MIR SINE MIR 63 259 -3 1528 234 30 8 chr15 48775826 48776189 -52604332 + MLT1A2 LTR MaLR 4 374 0 981 251 146 24 chr15 48776497 48776961 -52603560 + L2 LINE L2 2788 3312 -1 675 295 126 44 chr15 48777673 48778148 -52602373 + LTR33 LTR ERVL 3 516 -5 1928 136 27 0 chr15 48778531 48778825 -52601696 - AluJb SINE Alu -10 302 1 588 289 100 0 chr15 48779531 48779711 -52600810 - MIR SINE MIR -37 225 28 245 125 0 0 chr15 48780025 48780065 -52600456 - MER96 DNA MER1_type? -82 93 54 185 277 0 0 chr15 48780278 48780325 -52600196 - L2 LINE L2 -16 3256 3210 2063 118 0 0 chr15 48780400 48780689 -52599832 + AluSx SINE Alu 1 289 -23 1892 108 57 20 chr15 48781279 48781576 -52598945 + AluSc SINE Alu 1 308 -1 754 303 14 23 chr15 48781843 48782064 -52598457 + MIR SINE MIR 41 259 -3 1883 142 3 7 chr15 48782384 48782687 -52597834 - AluSc SINE Alu -7 302 1 22 0 0 0 chr15 48782687 48782709 -52597812 + AT_rich Low_complexity Low_complexity 1 22 0 341 355 120 0 chr15 48782947 48783008 -52597513 - MIR SINE MIR -38 224 172 1563 167 61 0 chr15 48783008 48783302 -52597219 + AluJo SINE Alu 1 312 0 341 355 120 0 chr15 48783302 48783423 -52597098 - MIR SINE MIR -90 172 20 470 258 0 8 chr15 48783440 48783564 -52596957 - L1MA10 LINE L1 -2 6332 6210 378 272 0 22 chr15 48783582 48783674 -52596847 + L1MC4 LINE L1 6614 6703 -1339 * 393 289 0 0 chr15 48783618 48783708 -52596813 - L1MC4 LINE L1 -1339 6703 6614 2330 81 0 0 chr15 48784233 48784529 -52595992 - AluSx SINE Alu -16 296 1 189 196 157 88 chr15 48785935 48786037 -52594484 + MIR3 SINE MIR 1 109 -99 1597 196 3 17 chr15 48786038 48786329 -52594192 + AluJo SINE Alu 1 287 -25 1509 207 15 21 chr15 48786410 48786739 -52593782 + MLT1A1 LTR MaLR 4 330 -35 21 0 0 0 chr15 48786766 48786787 -52593734 + AT_rich Low_complexity Low_complexity 1 21 0 349 180 150 0 chr15 48787124 48787224 -52593297 - L2 LINE L2 -20 3293 3179 1926 155 7 3 chr15 48787286 48787576 -52592945 - AluJb SINE Alu -21 291 1 277 266 16 0 chr15 48787615 48787679 -52592842 - L1MCa LINE L1 -5731 695 631 334 274 86 26 chr15 48788060 48788177 -52592344 + MER63 DNA MER1_type 1 750 -86 330 259 0 12 chr15 48788179 48788264 -52592257 + MER63 DNA MER1_type 979 1062 0 2644 175 91 12 chr15 48789165 48789684 -52590837 - MER68 LTR ERV1 -2 560 1 280 252 117 0 chr15 48789914 48790017 -52590504 - MIR SINE MIR -70 192 78 271 315 18 36 chr15 48790026 48790137 -52590384 - MIR3 SINE MIR -18 190 82 280 282 10 39 chr15 48791068 48791171 -52589350 + MIR SINE MIR 113 212 -50 194 260 20 0 chr15 48791198 48791248 -52589273 - MIR SINE MIR -95 167 117 264 158 0 88 chr15 48792151 48792208 -52588313 + MIR SINE MIR 57 108 -154 286 214 29 0 chr15 48792930 48793000 -52587521 + MIR SINE MIR 77 148 -60 185 267 67 13 chr15 48793542 48793617 -52586904 - MIR3 SINE MIR -49 159 81 289 297 73 24 chr15 48793730 48793895 -52586626 - MIR SINE MIR -14 248 76 269 320 163 7 chr15 48794675 48794822 -52585699 - MIR SINE MIR -85 177 8 301 278 40 26 chr15 48796279 48796430 -52584091 + MIR SINE MIR 70 222 -40 667 150 84 84 chr15 48796603 48796740 -52583781 + MLT1B LTR MaLR 1 140 -250 2326 99 3 0 chr15 48796740 48797034 -52583487 - AluSq SINE Alu -17 296 2 667 150 84 84 chr15 48797034 48797063 -52583458 + MLT1B LTR MaLR 139 167 -223 1713 210 19 43 chr15 48797206 48797667 -52582854 + L1ME2 LINE L1 5700 6149 -15 1030 185 0 11 chr15 48797886 48798064 -52582457 - FRAM SINE Alu 0 176 1 1998 119 0 0 chr15 48798146 48798407 -52582114 + AluSx SINE Alu 1 261 -51 7163 63 2 17 chr15 48798551 48799468 -52581053 + SVA Other Other 483 1385 -1 234 0 0 0 chr15 48799489 48799515 -52581006 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1867 107 4 0 chr15 48800206 48800459 -52580062 + AluSp SINE Alu 1 254 -59 185 222 0 0 chr15 48800966 48801002 -52579519 + L2 LINE L2 3264 3299 -14 22 65 0 0 chr15 48802412 48802443 -52578078 + AT_rich Low_complexity Low_complexity 1 31 0 27 49 0 0 chr15 48802587 48802628 -52577893 + GC_rich Low_complexity Low_complexity 1 41 0 537 332 109 12 chr15 48803125 48803862 -52576659 + L1ME LINE L1 4210 5028 -1118 554 258 69 74 chr15 48803924 48804175 -52576346 + L1ME LINE L1 5268 5522 -744 2770 22 0 3 chr15 48804175 48804486 -52576035 + AluY SINE Alu 1 310 -1 554 258 69 74 chr15 48804486 48804571 -52575950 + L1ME LINE L1 5522 5606 -660 259 153 188 35 chr15 48804612 48804697 -52575824 + L1ME LINE L1 5693 5790 -331 26 64 0 0 chr15 48805061 48805108 -52575413 + AT_rich Low_complexity Low_complexity 1 47 0 2496 224 95 27 chr15 48805222 48806003 -52574518 - L1ME3A LINE L1 -5 6165 5332 881 267 118 18 chr15 48806009 48806339 -52574182 - HAL1 LINE L1 -2135 372 10 * 1031 221 50 4 chr15 48806332 48806590 -52573931 - L1ME3A LINE L1 -870 5276 5007 623 141 99 8 chr15 48806601 48806722 -52573799 - FLAM_C SINE Alu 0 133 2 852 151 0 41 chr15 48806751 48806801 -52573720 - FLAM_A SINE Alu -169 142 91 3987 75 87 5 chr15 48806801 48807365 -52573156 + LTR66 LTR ERVL 1 610 0 852 151 0 41 chr15 48807365 48807460 -52573061 - FLAM_A SINE Alu -220 91 3 517 192 32 26 chr15 48807477 48807688 -52572833 - L1M4c LINE L1 -3927 2489 2237 2213 153 23 8 chr15 48807757 48808149 -52572372 - L1M4 LINE L1 -414 6581 6184 2104 212 33 25 chr15 48808250 48808408 -52572113 - L1M4 LINE L1 -994 5963 5808 1539 217 27 0 chr15 48808408 48808703 -52571818 - AluJo SINE Alu -8 304 2 2104 212 33 25 chr15 48808703 48809062 -52571459 - L1M4 LINE L1 -1149 5808 5442 * 2130 136 33 32 chr15 48809057 48809502 -52571019 - L1MCa LINE L1 -3908 3049 2602 5140 247 87 27 chr15 48809510 48810971 -52569550 - L1MCa LINE L1 -5310 1549 2 1469 133 41 7 chr15 48811568 48811839 -52568682 - AluY SINE Alu -11 300 21 576 298 144 14 chr15 48812450 48812902 -52567619 + MLT1K LTR MaLR 44 580 -8 2361 77 20 0 chr15 48812994 48813291 -52567230 + AluSc SINE Alu 1 303 -6 1822 144 82 3 chr15 48813496 48813815 -52566706 - MER7A DNA MER2_type -1 345 4 192 223 85 77 chr15 48816628 48816758 -52563763 + MIR SINE MIR 80 210 -52 285 29 0 0 chr15 48816910 48816944 -52563577 + (TG)n Simple_repeat Simple_repeat 2 35 0 297 286 26 0 chr15 48818836 48818913 -52561608 - MIR3 SINE MIR -15 193 115 2182 103 17 0 chr15 48819437 48819728 -52560793 - AluSx SINE Alu -16 296 1 180 111 0 0 chr15 48820480 48820507 -52560014 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 334 104 45 90 chr15 48821942 48822009 -52558512 + MER3 DNA MER1_type 41 104 -105 1991 98 76 0 chr15 48822469 48822744 -52557777 - AluSq SINE Alu -17 296 1 1554 84 0 0 chr15 48822757 48822948 -52557573 - AluSq SINE Alu -48 265 75 2493 87 0 0 chr15 48823025 48823335 -52557186 + AluY SINE Alu 1 310 -1 304 276 65 32 chr15 48823580 48823703 -52556818 + L2 LINE L2 3137 3263 -9 400 266 46 0 chr15 48823802 48823911 -52556610 + L2 LINE L2 3192 3305 -8 2474 85 0 16 chr15 48825246 48825564 -52554957 + AluSq SINE Alu 1 313 0 25 51 0 0 chr15 48825756 48825795 -52554726 + AT_rich Low_complexity Low_complexity 1 39 0 2017 144 0 10 chr15 48826518 48826817 -52553704 + AluSx SINE Alu 1 296 -16 2496 68 0 0 chr15 48827804 48828099 -52552422 + AluY SINE Alu 1 295 -16 216 0 0 0 chr15 48828865 48828889 -52551632 + (A)n Simple_repeat Simple_repeat 1 24 0 471 246 110 59 chr15 48829483 48829719 -52550802 + MIR SINE MIR 15 262 0 1154 73 0 0 chr15 48829903 48830054 -52550467 - L1PA4 LINE L1 0 6155 6005 2384 109 3 0 chr15 48830794 48831105 -52549416 + AluSx SINE Alu 1 312 0 27 0 0 0 chr15 48832041 48832068 -52548453 + AT_rich Low_complexity Low_complexity 1 27 0 2007 140 20 0 chr15 48832481 48832774 -52547747 - AluJo SINE Alu -13 299 1 22 0 0 0 chr15 48832890 48832912 -52547609 + AT_rich Low_complexity Low_complexity 1 22 0 1232 120 10 0 chr15 48833614 48833806 -52546715 + L1MB3 LINE L1 5983 6176 -7 1669 188 3 10 chr15 48834498 48834786 -52545735 + AluJo SINE Alu 1 286 -26 23 33 0 0 chr15 48835080 48835110 -52545411 + AT_rich Low_complexity Low_complexity 1 30 0 2039 261 114 19 chr15 48835255 48836242 -52544279 + L2 LINE L2 2216 3313 0 193 289 0 0 chr15 48836770 48836815 -52543706 + MER5B DNA MER1_type 1 45 -133 1051 204 0 52 chr15 48836815 48837045 -52543476 - AluJo SINE Alu -16 296 79 201 74 0 0 chr15 48837048 48837075 -52543446 + (T)n Simple_repeat Simple_repeat 1 27 0 451 256 8 32 chr15 48837075 48837200 -52543321 - MER5B DNA MER1_type -50 128 7 26 50 0 0 chr15 48838258 48838298 -52542223 + AT_rich Low_complexity Low_complexity 1 40 0 658 189 82 0 chr15 48839333 48839492 -52541029 - MER104 DNA Tc2 -6 174 3 2129 129 0 3 chr15 48839754 48840056 -52540465 + AluSp SINE Alu 1 301 -12 517 170 80 6 chr15 48840125 48840284 -52540237 + MSTD LTR MaLR 185 393 -3 308 252 213 13 chr15 48840511 48840666 -52539855 + MIR3 SINE MIR 20 205 -3 329 269 0 0 chr15 48841597 48841690 -52538831 - MARNA DNA Mariner -8 578 486 633 284 53 82 chr15 48841729 48842084 -52538437 - L2 LINE L2 0 3272 2928 235 182 0 0 chr15 48842128 48842172 -52538349 - MARNA DNA Mariner -199 387 344 2415 89 7 0 chr15 48842310 48842614 -52537907 + AluSg SINE Alu 1 306 -4 252 342 76 0 chr15 48842856 48842935 -52537586 + L2 LINE L2 3141 3225 -47 285 154 231 0 chr15 48843009 48843074 -52537447 - MADE1 DNA Mariner 0 80 1 895 266 10 0 chr15 48843074 48843266 -52537255 - MIR SINE MIR -67 195 2 251 291 0 0 chr15 48843266 48843320 -52537201 + L2 LINE L2 3214 3267 -5 22 0 0 0 chr15 48845030 48845052 -52535469 + AT_rich Low_complexity Low_complexity 1 22 0 183 204 0 0 chr15 48846591 48846635 -52533886 + A-rich Low_complexity Low_complexity 1 44 0 2143 116 0 17 chr15 48847737 48848038 -52532483 + AluSq SINE Alu 1 296 -17 1974 142 10 13 chr15 48849149 48849451 -52531070 + AluJb SINE Alu 1 301 -11 2344 96 0 3 chr15 48849706 48850007 -52530514 + AluSx SINE Alu 1 300 -12 526 246 188 22 chr15 48850963 48851187 -52529334 - MIR SINE MIR -1 261 1 1027 303 71 36 chr15 48851203 48851849 -52528672 + L2 LINE L2 2128 2796 -518 450 321 9 0 chr15 48851843 48851949 -52528572 + L2 LINE L2 3138 3244 -28 * 1403 157 53 90 chr15 48852131 48852373 -52528148 + MER2 DNA MER2_type 1 227 -117 2235 108 3 10 chr15 48852373 48852687 -52527834 + AluSq SINE Alu 1 312 -1 1403 157 53 90 chr15 48852687 48852801 -52527720 + MER2 DNA MER2_type 227 344 0 32 26 0 0 chr15 48853842 48853881 -52526640 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr15 48854161 48854183 -52526338 + AT_rich Low_complexity Low_complexity 1 22 0 358 126 0 105 chr15 48854329 48854424 -52526097 + L1PA8 LINE L1 6081 6165 -7 308 22 0 22 chr15 48856730 48856776 -52523745 + L1MA7 LINE L1 6239 6283 -8 2383 67 0 0 chr15 48857021 48857305 -52523216 - AluY SINE Alu -27 284 1 256 273 49 49 chr15 48857778 48857921 -52522600 - L3 LINE CR1 -122 1455 1313 29 28 0 0 chr15 48858022 48858058 -52522463 + AT_rich Low_complexity Low_complexity 1 36 0 2497 77 0 6 chr15 48859573 48859885 -52520636 + AluY SINE Alu 1 310 -1 1038 180 5 16 chr15 48860074 48860263 -52520258 - MER5A DNA MER1_type -1 188 2 1055 256 95 50 chr15 48861142 48861647 -52518874 + L1ME4a LINE L1 5285 5857 -264 2238 113 0 0 chr15 48861647 48861947 -52518574 + AluSg SINE Alu 1 300 -10 1055 256 95 50 chr15 48861947 48862223 -52518298 + L1ME4a LINE L1 5857 6119 -2 338 153 0 34 chr15 48862330 48862389 -52518132 - MER2 DNA MER2_type -10 335 279 21 36 0 0 chr15 48862710 48862738 -52517783 + AT_rich Low_complexity Low_complexity 1 28 0 1112 126 44 0 chr15 48862761 48862943 -52517578 - MER2 DNA MER2_type -155 190 1 337 240 212 14 chr15 48863345 48863491 -52517030 - L1ME4a LINE L1 -4 6117 5943 264 320 8 31 chr15 48863570 48863698 -52516823 - L1ME4a LINE L1 -316 5805 5681 26 0 0 0 chr15 48863789 48863815 -52516706 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr15 48863874 48863897 -52516624 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr15 48864526 48864549 -52515972 + (A)n Simple_repeat Simple_repeat 1 23 0 671 214 94 14 chr15 48865496 48865740 -52514781 + MLT1H LTR MaLR 12 302 -293 318 212 161 63 chr15 48865778 48865922 -52514599 + MLT1H1 LTR MaLR 415 553 -2 428 257 35 18 chr15 48866038 48866151 -52514370 + MIR SINE MIR 2 116 -146 21 0 0 0 chr15 48866325 48866346 -52514175 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr15 48866677 48866718 -52513803 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr15 48866802 48866825 -52513696 + AT_rich Low_complexity Low_complexity 1 23 0 342 256 103 0 chr15 48868638 48868755 -52511766 + MIR SINE MIR 124 252 -10 180 349 53 30 chr15 48869063 48869195 -52511326 + L2 LINE L2 1057 1191 -2123 296 245 39 20 chr15 48869997 48870099 -52510422 - MER103 DNA DNA -54 112 9 2437 87 0 3 chr15 48871030 48871339 -52509182 + AluSc SINE Alu 1 308 -1 523 215 44 70 chr15 48871395 48871623 -52508898 + L1MC5 LINE L1 7724 7945 -16 21 36 0 0 chr15 48871940 48871968 -52508553 + AT_rich Low_complexity Low_complexity 1 28 0 322 297 63 0 chr15 48872676 48872787 -52507734 + L2 LINE L2 3155 3272 0 198 0 0 0 chr15 48873703 48873725 -52506796 + (A)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chr15 48873829 48873852 -52506669 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr15 48873992 48874020 -52506501 + AT_rich Low_complexity Low_complexity 1 28 0 602 60 0 0 chr15 48874858 48874942 -52505579 + L1MB3 LINE L1 6085 6168 -15 405 0 0 0 chr15 48874944 48874989 -52505532 + (CA)n Simple_repeat Simple_repeat 2 46 0 180 235 59 15 chr15 48875430 48875498 -52505023 - MER5B DNA MER1_type -17 161 91 644 172 8 25 chr15 48875696 48875818 -52504703 + FLAM_C SINE Alu 1 120 -13 878 73 89 0 chr15 48876733 48876857 -52503664 - MER85 DNA T2_type -4 135 1 207 0 0 0 chr15 48876943 48876966 -52503555 + (T)n Simple_repeat Simple_repeat 1 23 0 1963 173 3 3 chr15 48877904 48878210 -52502311 + AluJo SINE Alu 1 306 -6 1625 152 68 0 chr15 48878680 48878997 -52501524 + AluJo SINE Alu 2 336 0 181 376 43 11 chr15 48880287 48880380 -52500141 + L3 LINE CR1 1417 1512 -65 297 0 0 0 chr15 48881028 48881061 -52499460 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1679 218 75 27 chr15 48881473 48881955 -52498566 + MLT1D LTR MaLR 1 505 0 752 258 0 0 chr15 48882077 48882228 -52498293 + FRAM SINE Alu 6 156 -20 21 0 0 0 chr15 48882228 48882249 -52498272 + AT_rich Low_complexity Low_complexity 1 21 0 2191 107 3 3 chr15 48884215 48884506 -52496015 + AluSc SINE Alu 1 291 -18 1974 154 3 0 chr15 48884645 48884944 -52495577 - AluSx SINE Alu -12 300 1 2296 85 17 0 chr15 48885314 48885608 -52494913 + AluSg SINE Alu 1 299 -11 903 150 150 0 chr15 48885851 48886011 -52494510 + MER5A DNA MER1_type 1 184 -5 2205 127 0 0 chr15 48887228 48887527 -52492994 + AluSx SINE Alu 2 300 -12 2261 77 0 3 chr15 48887559 48887845 -52492676 + AluSg SINE Alu 1 285 -25 493 208 135 45 chr15 48888547 48888792 -52491729 + L1ME4a LINE L1 5616 5882 -239 180 0 0 0 chr15 48888837 48888857 -52491664 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 243 0 0 0 chr15 48888856 48888883 -52491638 + (CA)n Simple_repeat Simple_repeat 1 27 0 287 163 47 93 chr15 48888931 48888967 -52491554 + L1ME4a LINE L1 5996 6032 -89 2287 107 3 0 chr15 48888967 48889275 -52491246 - AluSq SINE Alu -4 309 1 287 163 47 93 chr15 48889275 48889367 -52491154 + L1ME4a LINE L1 6032 6118 -3 1936 125 28 3 chr15 48889369 48889657 -52490864 + AluSq SINE Alu 1 295 -18 364 268 12 0 chr15 48892339 48892421 -52488100 - MIR SINE MIR -68 194 112 23 0 0 0 chr15 48892637 48892660 -52487861 + AT_rich Low_complexity Low_complexity 1 23 0 1807 129 36 18 chr15 48893108 48893416 -52487105 + AluJb SINE Alu 1 313 0 1859 164 10 3 chr15 48893628 48893921 -52486600 - AluJb SINE Alu -17 295 1 311 255 161 0 chr15 48894587 48894714 -52485807 + MIR SINE MIR 6 162 -46 827 263 68 29 chr15 48895809 48896117 -52484404 - MER46C DNA MER2_type 0 338 19 2163 128 0 3 chr15 48896745 48897049 -52483472 + AluSp SINE Alu 1 303 -10 2272 77 114 19 chr15 48897109 48897486 -52483035 + L1MA2 LINE L1 5892 6304 0 2085 132 6 10 chr15 48897623 48897934 -52482587 - AluJb SINE Alu -2 310 1 569 331 60 33 chr15 48898029 48898395 -52482126 - L1MC/D LINE L1 -2053 5755 5380 450 286 155 36 chr15 48899788 48900040 -52480481 - L2 LINE L2 -1 3312 3031 2357 104 0 0 chr15 48900460 48900768 -52479753 - AluY SINE Alu -3 308 1 551 215 60 35 chr15 48902090 48902290 -52478231 - HAL1 LINE L1 -6 2501 2297 867 252 34 13 chr15 48902611 48902845 -52477676 - MIR SINE MIR -22 240 2 426 352 114 39 chr15 48904818 48905150 -52475371 - L2 LINE L2 0 3272 2916 313 317 28 31 chr15 48905501 48905647 -52474874 - MIR3 SINE MIR -76 132 7 2332 90 0 37 chr15 48905783 48906105 -52474416 + AluSx SINE Alu 1 310 -2 299 303 69 16 chr15 48906187 48906375 -52474146 - L1MEd LINE L1 -3530 2599 2402 738 205 63 0 chr15 48906392 48906519 -52474002 - FRAM SINE Alu -30 146 12 234 330 73 0 chr15 48906537 48906716 -52473805 - L1MEd LINE L1 -3735 2394 2203 1983 123 70 35 chr15 48906727 48907124 -52473397 - L1PA16 LINE L1 0 6166 5756 1506 214 135 12 chr15 48907440 48907940 -52472581 - L1MC4 LINE L1 -8 7987 7284 575 298 43 44 chr15 48908027 48908151 -52472370 - L1MEd LINE L1 -4616 1694 1571 2061 136 10 0 chr15 48908151 48908446 -52472075 - AluSx SINE Alu -14 298 1 575 298 43 44 chr15 48908446 48909015 -52471506 - L1MEd LINE L1 -4739 1571 967 606 307 82 45 chr15 48909046 48909583 -52470938 - L1MEd LINE L1 -5353 766 210 2293 100 0 0 chr15 48909639 48909969 -52470552 + AluSx SINE Alu 1 330 0 2205 197 56 0 chr15 48910334 48910796 -52469725 + L1MB8 LINE L1 5685 6172 -6 2223 102 3 29 chr15 48911053 48911367 -52469154 + AluSq SINE Alu 1 306 -7 342 0 0 0 chr15 48912128 48912166 -52468355 + (CA)n Simple_repeat Simple_repeat 1 38 0 548 310 59 35 chr15 48912641 48912896 -52467625 + MIR SINE MIR 2 262 0 577 146 0 0 chr15 48913339 48913428 -52467093 - AluY SINE Alu -10 301 213 409 282 176 8 chr15 48913489 48913620 -52466901 - MER5A DNA MER1_type 0 189 37 702 180 93 0 chr15 48914080 48914230 -52466291 - L1MB7 LINE L1 -10 6174 6011 47 0 0 0 chr15 48914615 48914662 -52465859 + AT_rich Low_complexity Low_complexity 1 47 0 509 236 0 69 chr15 48914842 48915045 -52465476 - L1MC5 LINE L1 -51 7910 7722 21 36 0 0 chr15 48915278 48915306 -52465215 + AT_rich Low_complexity Low_complexity 1 28 0 2258 80 35 0 chr15 48917665 48917952 -52462569 - AluSg SINE Alu -13 297 1 221 329 150 36 chr15 48919495 48919662 -52460859 + MIR3 SINE MIR 17 202 -6 2336 108 3 0 chr15 48919943 48920248 -52460273 + AluSq SINE Alu 1 306 -7 738 134 0 84 chr15 48920258 48920400 -52460121 + FLAM_C SINE Alu 1 130 -3 2210 139 55 44 chr15 48921023 48921475 -52459046 + MSTB2 LTR MaLR 1 457 0 22 0 0 0 chr15 48923383 48923405 -52457116 + AT_rich Low_complexity Low_complexity 1 22 0 361 70 70 0 chr15 48923441 48923498 -52457023 + HERV15 LTR ERV1 2687 2747 -5988 307 160 0 0 chr15 48923498 48923548 -52456973 + tRNA-Ile-ATT tRNA tRNA 28 77 0 3297 70 23 13 chr15 48923581 48924053 -52456468 - LTR15 LTR ERV1 -16 477 1 1690 213 61 5 chr15 48924619 48924994 -52455527 + MSTD LTR MaLR 1 396 0 327 301 98 55 chr15 48925072 48925255 -52455266 - L2 LINE L2 -219 3053 2863 214 255 0 0 chr15 48925415 48925466 -52455055 - L2 LINE L2 0 3313 3263 342 80 0 0 chr15 48925799 48925849 -52454672 + (GA)n Simple_repeat Simple_repeat 2 51 0 236 393 88 4 chr15 48925958 48926230 -52454291 - L3 LINE CR1 -742 835 541 24 0 0 0 chr15 48926631 48926655 -52453866 + AT_rich Low_complexity Low_complexity 1 24 0 1849 196 15 35 chr15 48927008 48927102 -52453419 + MSTD LTR MaLR 1 95 -301 1955 174 3 0 chr15 48927102 48927401 -52453120 + AluJb SINE Alu 1 300 -12 1849 196 15 35 chr15 48927401 48927710 -52452811 + MSTD LTR MaLR 95 396 0 300 293 273 25 chr15 48927938 48928136 -52452385 + MIR SINE MIR 13 259 -3 238 357 31 19 chr15 48928515 48928702 -52451819 - MIR SINE MIR -40 222 33 304 353 42 0 chr15 48928844 48928963 -52451558 - MIR3 SINE MIR -43 165 42 933 225 81 75 chr15 48929415 48929775 -52450746 + L2 LINE L2 2313 2674 -640 1361 181 16 40 chr15 48929797 48930100 -52450421 - AluJo SINE Alu -5 297 2 379 272 68 10 chr15 48930128 48930231 -52450290 + L2 LINE L2 3203 3311 -2 2499 66 0 0 chr15 48930349 48930650 -52449871 + AluY SINE Alu 1 301 -10 700 267 92 0 chr15 48931395 48931601 -52448920 + MIR SINE MIR 38 262 0 26 0 0 0 chr15 48931611 48931637 -52448884 + AT_rich Low_complexity Low_complexity 1 26 0 784 189 0 0 chr15 48932052 48932179 -52448342 + FLAM_A SINE Alu 1 127 -6 270 323 32 21 chr15 48932237 48932330 -52448191 + MIR SINE MIR 48 141 -67 2186 113 0 0 chr15 48932426 48932738 -52447783 - AluSx SINE Alu 0 312 1 486 248 52 64 chr15 48933281 48933531 -52446990 + L1ME4a LINE L1 5569 5815 -306 1713 163 21 14 chr15 48933543 48933831 -52446690 - AluJb SINE Alu -16 296 7 239 222 111 28 chr15 48933943 48934051 -52446470 - L2 LINE L2 -167 3146 3030 230 204 333 15 chr15 48934053 48934254 -52446267 + L1ME4a LINE L1 5817 6081 -40 712 229 45 96 chr15 48934282 48934596 -52445925 - L2 LINE L2 -2 3311 3014 219 267 27 0 chr15 48934840 48934915 -52445606 + A-rich Low_complexity Low_complexity 5 81 0 189 200 0 0 chr15 48935129 48935164 -52445357 + L2 LINE L2 2125 2159 -1155 442 272 149 41 chr15 48935979 48936174 -52444347 + MIR SINE MIR 1 216 -46 1090 104 0 0 chr15 48936350 48936485 -52444036 + AluSq/x SINE Alu 1 135 -178 1991 77 7 64 chr15 48936485 48936783 -52443738 + AluSx SINE Alu 1 281 -31 2186 100 0 0 chr15 48936926 48937248 -52443273 - AluSx SINE Alu 0 322 1 843 120 8 8 chr15 48937248 48937373 -52443148 - AluJo SINE Alu -177 135 11 639 254 136 30 chr15 48938173 48938409 -52442112 + L1MC4a LINE L1 6336 6596 -1212 2275 121 0 0 chr15 48938429 48938726 -52441795 + AluSx SINE Alu 1 297 -15 730 179 0 8 chr15 48938731 48938848 -52441673 + FLAM_C SINE Alu 7 122 -21 236 175 35 18 chr15 48938853 48938910 -52441611 + (CATA)n Simple_repeat Simple_repeat 3 60 0 1901 208 96 61 chr15 48938940 48939183 -52441338 + L1MC4a LINE L1 6571 6804 -1188 1567 141 115 7 chr15 48939183 48939452 -52441069 + AluJo SINE Alu 1 298 -14 1901 208 96 61 chr15 48939452 48939914 -52440607 + L1MC4a LINE L1 6804 7476 -516 555 277 43 62 chr15 48939927 48940183 -52440338 + MIR SINE MIR 2 252 -10 2364 107 0 3 chr15 48940897 48941205 -52439316 - AluSq SINE Alu -6 307 1 2427 91 0 0 chr15 48941473 48941781 -52438740 - AluSg SINE Alu -2 308 1 894 244 127 13 chr15 48941930 48942237 -52438284 + Tigger8 DNA MER2_type 241 582 -84 2308 87 0 35 chr15 48942749 48943060 -52437461 - AluSc SINE Alu -9 300 1 2099 107 3 41 chr15 48943396 48943713 -52436808 - AluSq SINE Alu -8 305 1 774 304 93 48 chr15 48943733 48944217 -52436304 + L2 LINE L2 2777 3308 -5 2281 118 0 0 chr15 48944796 48945100 -52435421 + AluSx SINE Alu 1 304 -8 6515 57 13 8 chr15 48945976 48946752 -52433769 + LTR17 LTR ERV1 1 780 0 2351 115 0 0 chr15 48947739 48948051 -52432470 - AluSx SINE Alu 0 312 1 186 103 0 0 chr15 48948797 48948826 -52431695 + (TG)n Simple_repeat Simple_repeat 2 30 0 249 239 0 0 chr15 48948848 48948894 -52431627 - L1MC5 LINE L1 -73 7888 7843 529 316 18 37 chr15 48948963 48949181 -52431340 + L2 LINE L2 2844 3057 -215 294 279 12 12 chr15 48950016 48950102 -52430419 - MIR SINE MIR -6 256 171 2120 103 30 17 chr15 48950234 48950534 -52429987 - AluY SINE Alu -7 304 1 1964 104 11 0 chr15 48950948 48951208 -52429313 + AluSg SINE Alu 35 297 -13 1826 124 4 11 chr15 48951216 48951483 -52429038 + AluSx SINE Alu 35 299 -13 21 57 0 0 chr15 48951589 48951624 -52428897 + AT_rich Low_complexity Low_complexity 1 35 0 393 225 0 45 chr15 48951974 48952063 -52428458 - MIR SINE MIR -148 114 30 2284 148 88 15 chr15 48952559 48952958 -52427563 + MSTA LTR MaLR 1 428 0 9694 166 24 10 chr15 48952959 48954587 -52425934 + MSTA-int LTR MaLR 2 1651 0 2037 156 130 16 chr15 48954587 48954971 -52425550 + MSTA LTR MaLR 1 428 0 2655 139 0 5 chr15 48954971 48955387 -52425134 + MSTA-int LTR MaLR 1 414 -1237 * 3934 143 62 41 chr15 48955363 48956069 -52424452 + MSTA-int LTR MaLR 860 1580 0 1794 167 152 0 chr15 48956069 48956417 -52424104 + MSTA LTR MaLR 1 401 -27 2591 77 0 0 chr15 48956441 48956752 -52423769 - AluSx SINE Alu -1 311 1 280 93 0 47 chr15 48956752 48956795 -52423726 + MSTA LTR MaLR 388 428 0 201 348 14 51 chr15 48957040 48957178 -52423343 + L2 LINE L2 2031 2163 -1151 1799 180 0 7 chr15 48957202 48957496 -52423025 + AluJb SINE Alu 2 293 -19 731 165 8 16 chr15 48957520 48957641 -52422880 + FLAM_A SINE Alu 1 120 -13 475 234 37 0 chr15 48957710 48957817 -52422704 + MIR SINE MIR 136 246 -16 23 33 0 0 chr15 48957831 48957861 -52422660 + AT_rich Low_complexity Low_complexity 1 30 0 1999 140 10 7 chr15 48957868 48958168 -52422353 + AluSx SINE Alu 1 301 -11 761 195 17 0 chr15 48958168 48958286 -52422235 - AluJo/FLAM SINE Alu -182 120 1 694 120 0 0 chr15 48958327 48958427 -52422094 - AluJb SINE Alu -8 304 205 952 291 119 63 chr15 48958450 48959475 -52421046 + L2 LINE L2 2185 3272 0 3653 161 32 11 chr15 48959569 48960184 -52420337 + L1MA4A LINE L1 1250 1877 -4688 1141 142 0 0 chr15 48960184 48960346 -52420175 + AluSg/x SINE Alu 134 295 -15 15846 173 29 22 chr15 48960347 48964591 -52415930 + L1MA4A LINE L1 2428 6640 -1082 180 0 0 0 chr15 48964591 48964611 -52415910 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 15846 173 29 22 chr15 48964611 48964643 -52415878 + L1MA4A LINE L1 6640 6670 -1052 1734 136 79 4 chr15 48964643 48964923 -52415598 + AluJb SINE Alu 1 301 -11 15846 173 29 22 chr15 48964923 48965777 -52414744 + L1MA4A LINE L1 6670 7599 -123 1318 164 25 127 chr15 48965777 48966131 -52414390 + AluYb8 SINE Alu 1 318 0 15846 173 29 22 chr15 48966131 48966256 -52414265 + L1MA4A LINE L1 7599 7722 0 230 322 17 25 chr15 48966357 48966475 -52414046 + L1ME LINE L1 5492 5608 -513 892 107 0 8 chr15 48966501 48966622 -52413899 - AluSg/x SINE Alu -30 279 160 9715 65 3 101 chr15 48966641 48968164 -52412357 - SVA Other Other 0 1386 12 28 61 0 0 chr15 48968324 48968373 -52412148 + AT_rich Low_complexity Low_complexity 1 49 0 1933 152 7 3 chr15 48968439 48968736 -52411785 - AluJb SINE Alu -14 298 1 2221 105 0 14 chr15 48969164 48969460 -52411061 + AluSg SINE Alu 1 292 -18 2423 64 0 10 chr15 48969465 48969763 -52410758 + AluY SINE Alu 1 295 -16 21 0 0 0 chr15 48969798 48969819 -52410702 + AT_rich Low_complexity Low_complexity 1 21 0 2160 115 7 0 chr15 48970049 48970345 -52410176 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr15 48970951 48970973 -52409548 + AT_rich Low_complexity Low_complexity 1 22 0 537 287 92 0 chr15 48971456 48971620 -52408901 + MIR SINE MIR 18 196 -66 428 323 210 32 chr15 48971707 48972121 -52408400 + L2 LINE L2 2783 3267 -5 302 339 79 0 chr15 48972162 48972289 -52408232 - L2 LINE L2 -494 2820 2684 943 170 0 0 chr15 48973013 48973160 -52407361 + FRAM SINE Alu 20 166 -10 1039 271 61 80 chr15 48973221 48973887 -52406634 + L1PA15-16 LINE L1 1 631 -6218 3502 212 33 12 chr15 48974298 48975428 -52405093 + L1M2 LINE L1 1081 2515 -4334 676 169 51 9 chr15 48975551 48975806 -52404715 + AluJ SINE Alu 1 301 -11 415 281 27 45 chr15 48975806 48975859 -52404662 + L1MC4a LINE L1 5387 5439 -2369 1669 185 0 38 chr15 48975859 48976173 -52404348 + AluJo SINE Alu 1 302 -10 415 281 27 45 chr15 48976173 48976340 -52404181 + L1MC4a LINE L1 5439 5603 -2205 309 281 62 0 chr15 48976435 48976595 -52403926 + L1MC4a LINE L1 5576 5745 -376 10290 128 14 27 chr15 48976644 48977853 -52402668 - Tigger2 DNA MER2_type 0 2718 1495 2117 89 7 17 chr15 48977853 48978146 -52402375 + AluSp SINE Alu 1 290 -23 10290 128 14 27 chr15 48978146 48978224 -52402297 - Tigger2 DNA MER2_type -1223 1495 1418 2323 106 0 0 chr15 48978224 48978535 -52401986 + AluSx SINE Alu 1 311 -1 10290 128 14 27 chr15 48978535 48978805 -52401716 - Tigger2 DNA MER2_type -1300 1418 1178 1473 141 104 63 chr15 48978805 48979076 -52401445 + AluJo SINE Alu 1 287 -25 396 0 0 0 chr15 48979076 48979120 -52401401 + (CA)n Simple_repeat Simple_repeat 2 45 0 1473 141 104 63 chr15 48979120 48979147 -52401374 + AluJo SINE Alu 287 311 -1 10290 128 14 27 chr15 48979147 48979192 -52401329 - Tigger2 DNA MER2_type -1540 1178 1134 1615 188 0 4 chr15 48979216 48979488 -52401033 - AluJb SINE Alu -32 280 10 622 71 0 0 chr15 48979495 48979579 -52400942 - Tigger2 DNA MER2_type -1568 1150 1067 2324 77 0 7 chr15 48979579 48979877 -52400644 - AluY SINE Alu -15 296 1 42556 62 2 4 chr15 48979897 48986059 -52394462 - L1PA5 LINE L1 -4 6150 1 718 111 0 19 chr15 48986065 48986173 -52394348 - Tigger2 DNA MER2_type -1648 1070 965 * 3355 131 46 38 chr15 48986172 48986500 -52394021 - Tigger2 DNA MER2_type -2127 591 254 1964 116 65 0 chr15 48986500 48986776 -52393745 - AluSx SINE Alu -18 294 1 3355 131 46 38 chr15 48986776 48987033 -52393488 - Tigger2 DNA MER2_type -2464 254 1 315 211 194 29 chr15 48987046 48987213 -52393308 + L1MC4a LINE L1 5775 5967 -154 380 111 63 0 chr15 48987574 48987637 -52392884 + L1MA9 LINE L1 6244 6310 -2 255 253 194 29 chr15 48987891 48988061 -52392460 - MIR3 SINE MIR -8 200 3 271 188 145 0 chr15 48988380 48988449 -52392072 - L2 LINE L2 -2 3311 3233 329 323 122 93 chr15 48988861 48989304 -52391217 - L2 LINE L2 -9 3263 2808 215 235 15 59 chr15 48989284 48989352 -52391169 + L2 LINE L2 3245 3309 -4 * 22 0 0 0 chr15 48990139 48990161 -52390360 + AT_rich Low_complexity Low_complexity 1 22 0 300 122 0 0 chr15 48990184 48990225 -52390296 + L1MC1 LINE L1 6276 6316 -17 1138 108 6 0 chr15 48992145 48992302 -52388219 - AluSx SINE Alu -13 297 140 432 21 0 0 chr15 48992307 48992355 -52388166 + AluSq/x SINE Alu 84 131 -181 1097 75 0 0 chr15 48992388 48992521 -52388000 - AluSx SINE Alu -180 133 1 207 0 0 0 chr15 48992759 48992782 -52387739 + (A)n Simple_repeat Simple_repeat 1 23 0 204 287 19 83 chr15 48993596 48993704 -52386817 - L2 LINE L2 -4 3268 3168 546 266 57 17 chr15 48993769 48993946 -52386575 - MIR SINE MIR -74 188 5 284 186 0 0 chr15 48993950 48993993 -52386528 + L2 LINE L2 3003 3045 -268 1771 162 7 13 chr15 48994634 48994937 -52385584 + AluJo SINE Alu 1 301 -11 2192 130 0 0 chr15 48994941 48995241 -52385280 + AluSx SINE Alu 1 300 -12 277 262 96 48 chr15 48996125 48996312 -52384209 + L1MC5 LINE L1 7736 7931 -30 1415 228 11 11 chr15 48996566 48996782 -52383739 + L1MB1 LINE L1 4943 5161 -985 2314 88 0 3 chr15 48996782 48997078 -52383443 + AluSc SINE Alu 1 295 -14 1415 228 11 11 chr15 48997078 48997208 -52383313 + L1MB1 LINE L1 5160 5289 -857 866 146 7 21 chr15 48997208 48997352 -52383169 + FLAM_C SINE Alu 1 142 -1 4144 173 5 84 chr15 48997352 48998213 -52382308 + L1MB1 LINE L1 5279 6060 -108 1899 141 7 11 chr15 48998213 48998519 -52382002 - AluJo SINE Alu 0 305 1 4144 173 5 84 chr15 48998519 48998610 -52381911 + L1MB1 LINE L1 6060 6157 -11 25 75 0 0 chr15 48998610 48998663 -52381858 + AT_rich Low_complexity Low_complexity 1 53 0 1685 218 63 66 chr15 48999273 48999668 -52380853 + L1MC5 LINE L1 7326 7720 -241 3165 177 47 2 chr15 48999668 49000204 -52380317 - MER68 LTR ERV1 -2 560 1 1685 218 63 66 chr15 49000204 49000410 -52380111 + L1MC5 LINE L1 7720 7925 -36 2248 110 3 0 chr15 49000880 49001180 -52379341 + AluSx SINE Alu 1 301 -11 1974 147 7 0 chr15 49001986 49002292 -52378229 - AluSx SINE Alu -4 308 1 3114 148 37 13 chr15 49002643 49003178 -52377343 + L1MA8 LINE L1 5738 6285 -6 1447 62 42 21 chr15 49003396 49003589 -52376932 + L1PA6 LINE L1 5958 6154 0 519 259 6 56 chr15 49004304 49004466 -52376055 - LTR16A LTR ERVL -162 288 135 1938 153 0 10 chr15 49004466 49004760 -52375761 - AluJb SINE Alu -21 291 1 241 269 103 0 chr15 49004815 49004893 -52375628 + L1M4 LINE L1 2744 2829 -3317 2269 108 3 3 chr15 49004973 49005279 -52375242 + AluSx SINE Alu 1 306 -6 1087 259 49 2 chr15 49005287 49005696 -52374825 + L1M4 LINE L1 2814 3241 -2905 709 300 119 18 chr15 49005697 49006150 -52374371 - L1ME LINE L1 -327 5794 5296 4849 140 33 56 chr15 49006817 49007400 -52373121 - L1MB3 LINE L1 -2 6181 5586 654 268 0 30 chr15 49007400 49007568 -52372953 + FRAM SINE Alu 1 163 -3 4849 140 33 56 chr15 49007568 49007842 -52372679 - L1MB3 LINE L1 -597 5586 5345 2384 90 0 3 chr15 49007842 49008142 -52372379 - AluSq SINE Alu -14 299 1 4849 140 33 56 chr15 49008142 49008224 -52372297 - L1MB3 LINE L1 -838 5345 5263 32 0 0 0 chr15 49008406 49008438 -52372083 + AT_rich Low_complexity Low_complexity 1 32 0 2389 54 0 10 chr15 49008472 49008767 -52371754 - AluY SINE Alu -19 292 1 1866 171 7 3 chr15 49008814 49009124 -52371397 + AluJo SINE Alu 1 311 -1 303 200 35 43 chr15 49009174 49009289 -52371232 - L1ME4a LINE L1 -1 6120 6007 392 81 0 16 chr15 49009339 49009401 -52371120 + (CA)n Simple_repeat Simple_repeat 1 61 0 25 31 0 0 chr15 49009500 49009532 -52370989 + AT_rich Low_complexity Low_complexity 1 32 0 1768 116 21 0 chr15 49009533 49009774 -52370747 + AluSx SINE Alu 38 283 -29 294 29 0 0 chr15 49009774 49009809 -52370712 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2730 148 8 17 chr15 49010349 49010830 -52369691 + L1MA4 LINE L1 5823 6299 -1 1613 165 10 37 chr15 49010834 49011131 -52369390 + AluJo SINE Alu 1 289 -23 22 35 0 0 chr15 49011131 49011160 -52369361 + AT_rich Low_complexity Low_complexity 1 29 0 212 189 0 0 chr15 49011538 49011575 -52368946 + T-rich Low_complexity Low_complexity 1 37 0 349 228 82 82 chr15 49012069 49012114 -52368407 - MLT1L LTR MaLR -8 607 563 2132 103 34 0 chr15 49012114 49012406 -52368115 + AluSg1 SINE Alu 2 303 -6 349 228 82 82 chr15 49012406 49012518 -52368003 - MLT1L LTR MaLR -51 564 450 2069 131 0 20 chr15 49013425 49013563 -52366958 + AluSx SINE Alu 1 140 -172 2410 91 0 0 chr15 49013563 49013871 -52366650 + AluY SINE Alu 1 308 -3 2069 131 0 20 chr15 49013871 49014038 -52366483 + AluSx SINE Alu 140 300 -12 1853 146 10 0 chr15 49014049 49014344 -52366177 + AluSx SINE Alu 1 298 -14 483 253 61 72 chr15 49014350 49014628 -52365893 - MLT1L LTR MaLR -167 448 110 1816 143 51 3 chr15 49015029 49015322 -52365199 + AluJb SINE Alu 1 307 -5 30 45 0 0 chr15 49015357 49015401 -52365120 + AT_rich Low_complexity Low_complexity 1 44 0 216 224 105 26 chr15 49015446 49015522 -52364999 - MIR SINE MIR -26 236 155 1944 163 0 7 chr15 49016467 49016773 -52363748 - AluJb SINE Alu -8 304 1 22 35 0 0 chr15 49017787 49017816 -52362705 + AT_rich Low_complexity Low_complexity 1 29 0 2303 128 0 59 chr15 49017955 49018313 -52362208 + MER1B DNA MER1_type 1 337 0 2497 57 7 0 chr15 49019383 49019680 -52360841 + AluY SINE Alu 1 299 -12 21 0 0 0 chr15 49020015 49020036 -52360485 + AT_rich Low_complexity Low_complexity 1 21 0 833 174 15 92 chr15 49020331 49020527 -52359994 + AluSg/x SINE Alu 120 300 -12 2287 98 0 0 chr15 49020650 49020945 -52359576 + AluSq SINE Alu 1 295 -18 2109 96 0 21 chr15 49020950 49021232 -52359289 - AluSq SINE Alu -37 276 1 212 320 27 95 chr15 49021662 49021741 -52358780 - L2 LINE L2 0 3272 3206 372 171 14 0 chr15 49021741 49021811 -52358710 + L1MB8 LINE L1 6104 6174 -4 212 320 27 95 chr15 49021811 49021878 -52358643 - L2 LINE L2 -66 3206 3136 522 227 200 0 chr15 49022154 49022304 -52358217 + MER5A DNA MER1_type 9 188 -1 183 365 77 13 chr15 49022337 49022493 -52358028 - L2 LINE L2 -556 2758 2593 1926 151 13 10 chr15 49022497 49022808 -52357713 + AluJo SINE Alu 1 312 0 225 312 46 18 chr15 49022857 49022966 -52357555 - L2 LINE L2 -808 2506 2395 715 199 96 0 chr15 49022984 49023130 -52357391 - MIR SINE MIR -1 261 102 423 299 173 13 chr15 49023123 49023441 -52357080 - L2 LINE L2 -900 2414 2046 * 841 255 27 27 chr15 49023465 49023724 -52356797 - MIR SINE MIR -2 260 2 251 288 0 0 chr15 49023779 49023838 -52356683 + MIR SINE MIR 204 262 0 399 223 228 80 chr15 49024778 49024904 -52355617 + L1ME4a LINE L1 5679 5785 -336 1986 105 0 82 chr15 49024904 49025219 -52355302 + AluSq SINE Alu 1 289 -24 399 223 228 80 chr15 49025219 49025478 -52355043 + L1ME4a LINE L1 5785 6121 0 817 189 15 102 chr15 49025628 49025834 -52354687 + MER20 DNA MER1_type 32 219 0 1655 189 7 3 chr15 49026832 49027146 -52353375 + AluJo SINE Alu 1 315 0 2309 89 0 3 chr15 49027240 49027531 -52352990 - AluSg SINE Alu -20 290 1 491 274 162 25 chr15 49027931 49028172 -52352349 + MLT1K LTR MaLR 313 586 -2 2242 107 0 0 chr15 49028449 49028747 -52351774 + AluSg SINE Alu 1 298 -12 815 152 62 0 chr15 49029693 49029854 -52350667 + L1ME1 LINE L1 6000 6161 -5 24 0 0 0 chr15 49030336 49030360 -52350161 + AT_rich Low_complexity Low_complexity 1 24 0 364 211 172 8 chr15 49030937 49031065 -52349456 - L2 LINE L2 -4 3309 3161 26 30 0 0 chr15 49031740 49031773 -52348748 + AT_rich Low_complexity Low_complexity 1 33 0 1576 216 0 0 chr15 49031773 49032051 -52348470 + AluJb SINE Alu 1 278 -34 360 0 0 0 chr15 49032055 49032095 -52348426 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1787 156 36 7 chr15 49032098 49032399 -52348122 + AluJo SINE Alu 1 310 -2 567 130 10 0 chr15 49032721 49032821 -52347700 + L1MB7 LINE L1 6084 6184 0 327 317 59 20 chr15 49033416 49033517 -52347004 + L2 LINE L2 3153 3257 -15 1031 148 4 109 chr15 49033690 49033866 -52346655 - AluJb SINE Alu -21 291 98 207 0 0 0 chr15 49033866 49033889 -52346632 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1981 93 67 0 chr15 49033889 49034157 -52346364 - AluSp SINE Alu -27 286 1 1031 148 4 109 chr15 49034157 49034209 -52346312 - AluJb SINE Alu -212 100 86 1486 83 69 28 chr15 49034427 49034645 -52345876 + MER30 DNA MER1_type 4 230 0 448 231 21 49 chr15 49034705 49034848 -52345673 + MIR SINE MIR 124 262 0 426 205 114 27 chr15 49035073 49035256 -52345265 - MIR3 SINE MIR -64 198 4 363 282 144 81 chr15 49036064 49036660 -52343861 - L1M2 LINE L1 -5562 1287 654 336 305 79 94 chr15 49036274 49036883 -52343638 + L1M2 LINE L1 760 1359 -5490 * 219 114 0 0 chr15 49037580 49037615 -52342906 + (TTG)n Simple_repeat Simple_repeat 2 36 0 193 229 0 21 chr15 49038008 49038056 -52342465 + MIR3 SINE MIR 12 58 -150 2041 130 0 0 chr15 49038388 49038672 -52341849 - AluSx SINE Alu -28 284 1 505 270 104 4 chr15 49039006 49039164 -52341357 - L2 LINE L2 -9 3304 3114 2255 167 45 55 chr15 49039164 49039636 -52340885 - MLT1C LTR MaLR 0 467 1 505 270 104 4 chr15 49039636 49039707 -52340814 - L2 LINE L2 -198 3115 3052 211 341 91 0 chr15 49039729 49039817 -52340704 - L2 LINE L2 -20 3252 3157 2035 144 0 16 chr15 49040414 49040719 -52339802 - AluSx SINE Alu -12 300 1 188 327 58 0 chr15 49041082 49041134 -52339387 + MIR3 SINE MIR 14 68 -140 288 0 0 0 chr15 49041165 49041197 -52339324 + (TAA)n Simple_repeat Simple_repeat 2 33 0 5022 130 115 127 chr15 49041197 49041649 -52338872 - L1MC3 LINE L1 -13 7772 7316 1712 196 0 3 chr15 49041649 49041950 -52338571 - AluJb SINE Alu -1 311 12 5022 130 115 127 chr15 49041950 49042094 -52338427 - L1MC3 LINE L1 -469 7316 7172 2275 128 98 14 chr15 49042094 49042453 -52338068 + MLT1B LTR MaLR 1 389 -1 5022 130 115 127 chr15 49042453 49042482 -52338039 - L1MC3 LINE L1 -613 7172 7144 236 277 12 12 chr15 49042482 49042565 -52337956 - MLT1F1 LTR MaLR -459 108 26 5022 130 115 127 chr15 49042565 49043189 -52337332 - L1MC3 LINE L1 -641 7144 6455 2324 98 0 25 chr15 49043221 49043539 -52336982 + AluSg SINE Alu 1 310 0 2151 110 0 26 chr15 49043670 49043980 -52336541 - AluSg SINE Alu -8 302 1 2628 33 3 3 chr15 49044277 49044577 -52335944 - AluY SINE Alu -11 300 1 315 336 102 72 chr15 49044707 49045139 -52335382 + LTR67 LTR ERVL 42 486 -71 1791 135 4 8 chr15 49045193 49045459 -52335062 - AluJb SINE Alu -38 274 10 226 306 82 0 chr15 49045873 49045958 -52334563 + L1M4 LINE L1 5199 5290 -856 2232 127 37 45 chr15 49045971 49046349 -52334172 + THE1C LTR MaLR 1 375 0 2377 99 7 0 chr15 49046510 49046813 -52333708 + AluSp SINE Alu 1 305 -8 2133 135 58 25 chr15 49046870 49047233 -52333288 - THE1C LTR MaLR 0 375 1 10804 102 46 44 chr15 49047233 49048760 -52331761 - THE1C-int LTR MaLR 0 1580 48 2325 60 10 23 chr15 49048760 49049060 -52331461 - AluY SINE Alu -15 296 1 10804 102 46 44 chr15 49049060 49049109 -52331412 - THE1C-int LTR MaLR -1532 48 1 913 141 109 16 chr15 49049109 49049293 -52331228 - THE1C LTR MaLR 0 375 175 337 289 64 45 chr15 49049350 49049506 -52331015 + HAL1b LINE L1 746 904 -444 29 0 0 0 chr15 49049668 49049697 -52330824 + AT_rich Low_complexity Low_complexity 1 29 0 1445 177 10 47 chr15 49049703 49050003 -52330518 - AluJo SINE Alu -23 289 1 247 234 26 0 chr15 49050026 49050103 -52330418 + HAL1 LINE L1 2293 2371 -136 1730 158 0 103 chr15 49050819 49050981 -52329540 - AluJb SINE Alu -7 295 183 2188 108 0 3 chr15 49050981 49051276 -52329245 - AluSx SINE Alu -3 309 16 1730 158 0 103 chr15 49051276 49051442 -52329079 - AluJb SINE Alu -119 183 1 3327 193 50 88 chr15 49051442 49051677 -52328844 - L1 LINE L1 -3026 4539 4296 2210 90 7 35 chr15 49051677 49051987 -52328534 - AluSq SINE Alu -1 312 12 1738 166 0 14 chr15 49051988 49052284 -52328237 - AluJb SINE Alu -20 292 1 3327 193 50 88 chr15 49052284 49052625 -52327896 - L1 LINE L1 -3269 4296 3943 2016 138 7 0 chr15 49052625 49052921 -52327600 - AluSx SINE Alu -4 308 11 3327 193 50 88 chr15 49052921 49053418 -52327103 - L1 LINE L1 -3622 3943 3501 5288 205 45 11 chr15 49053424 49054514 -52326007 - L1 LINE L1 -5722 1844 718 239 29 57 0 chr15 49054845 49054880 -52325641 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1375 155 49 38 chr15 49055586 49055706 -52324815 + Tigger7 DNA MER2_type 1 118 -615 2421 87 10 0 chr15 49055706 49056015 -52324506 + AluSq SINE Alu 1 312 -1 1375 155 49 38 chr15 49056015 49056158 -52324363 + Tigger7 DNA MER2_type 118 267 -466 688 141 0 0 chr15 49056156 49056255 -52324266 + Tigger7 DNA MER2_type 2489 2587 0 * 577 208 20 0 chr15 49058036 49058137 -52322384 + FRAM SINE Alu 63 165 -11 1775 149 19 56 chr15 49059789 49060112 -52320409 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr15 49060255 49060277 -52320244 + AT_rich Low_complexity Low_complexity 1 22 0 2058 119 0 26 chr15 49060287 49060590 -52319931 + AluSx SINE Alu 1 295 -17 262 194 15 75 chr15 49060990 49061057 -52319464 - L2 LINE L2 -20 3252 3190 22 0 0 0 chr15 49062036 49062058 -52318463 + AT_rich Low_complexity Low_complexity 1 22 0 194 299 139 73 chr15 49062411 49062548 -52317973 - MIR3 SINE MIR -30 178 33 23 0 0 0 chr15 49065219 49065242 -52315279 + AT_rich Low_complexity Low_complexity 1 23 0 853 142 22 30 chr15 49065242 49065376 -52315145 - AluJo SINE Alu -178 134 2 1597 191 12 35 chr15 49065670 49065989 -52314532 + AluJb SINE Alu 1 312 0 21 57 0 0 chr15 49066266 49066301 -52314220 + AT_rich Low_complexity Low_complexity 1 35 0 635 191 0 9 chr15 49066354 49066464 -52314057 - FLAM_C SINE Alu -34 109 1 771 95 9 0 chr15 49067690 49067795 -52312726 - AluSq/x SINE Alu -206 107 2 23 0 0 0 chr15 49069150 49069173 -52311348 + AT_rich Low_complexity Low_complexity 1 23 0 954 117 0 0 chr15 49069435 49069572 -52310949 - FLAM_C SINE Alu -1 142 6 492 255 244 11 chr15 49069573 49069954 -52310567 + L1M4 LINE L1 2459 2928 -3218 230 189 0 74 chr15 49069954 49070151 -52310370 + AluJo SINE Alu 73 300 -2 2193 90 0 27 chr15 49070365 49070666 -52309855 - AluSg SINE Alu -10 300 8 822 179 13 0 chr15 49071774 49071925 -52308596 + FRAM SINE Alu 8 160 -16 1341 134 94 43 chr15 49072538 49072814 -52307707 - AluJo SINE Alu -12 300 11 2271 94 0 3 chr15 49073355 49073653 -52306868 - AluSg SINE Alu -13 297 1 1974 159 0 0 chr15 49073656 49073952 -52306569 - AluSx SINE Alu -10 302 7 28 0 0 0 chr15 49073957 49073985 -52306536 + AT_rich Low_complexity Low_complexity 1 28 0 1380 137 53 26 chr15 49073986 49074092 -52306429 - AluJo SINE Alu -80 232 130 216 0 0 0 chr15 49074092 49074116 -52306405 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1380 137 53 26 chr15 49074116 49074235 -52306286 - AluJo SINE Alu -182 130 1 235 314 33 25 chr15 49077188 49077309 -52303212 + L2 LINE L2 1839 1960 -1354 871 153 15 0 chr15 49077956 49078087 -52302434 + AluJo/FLAM SINE Alu 1 133 -169 2147 122 0 7 chr15 49078088 49078392 -52302129 - AluSx SINE Alu -10 302 1 309 252 213 26 chr15 49078623 49078778 -52301743 + L2 LINE L2 1987 2170 -1144 1863 125 6 87 chr15 49078809 49078994 -52301527 - AluSx SINE Alu -15 297 147 2179 103 14 0 chr15 49078994 49079276 -52301245 + AluSq SINE Alu 1 286 -27 1863 125 6 87 chr15 49079276 49079411 -52301110 - AluSx SINE Alu -165 147 3 3034 133 29 6 chr15 49079439 49079919 -52300602 + Tigger1 DNA MER2_type 2 492 -1926 978 136 7 0 chr15 49079919 49080059 -52300462 + AluJb SINE Alu 1 141 -171 9487 123 34 3 chr15 49080063 49081062 -52299459 + Tigger1 DNA MER2_type 414 1473 -945 1801 132 0 8 chr15 49081062 49081327 -52299194 - AluSx SINE Alu -17 295 33 9487 123 34 3 chr15 49081327 49081762 -52298759 + Tigger1 DNA MER2_type 1473 1893 -525 2445 111 19 3 chr15 49081769 49082139 -52298382 - L1MA4 LINE L1 -260 6040 5665 1757 127 88 14 chr15 49082139 49082422 -52298099 - AluSx SINE Alu -8 304 1 1797 152 23 23 chr15 49082433 49082743 -52297778 - AluSx SINE Alu -2 310 1 2651 167 60 30 chr15 49082744 49082979 -52297542 - L1MA4 LINE L1 -782 5364 5138 2354 108 0 0 chr15 49082979 49083285 -52297236 - AluSx SINE Alu -6 306 1 2651 167 60 30 chr15 49083285 49083876 -52296645 - L1MA4 LINE L1 -1008 5138 4345 2360 116 6 14 chr15 49083876 49084222 -52296299 + Tigger1 DNA MER2_type 1886 2228 -190 919 196 196 87 chr15 49084224 49084489 -52296032 - AluJo SINE Alu -17 295 2 585 158 93 163 chr15 49084492 49084594 -52295927 + Tigger1 DNA MER2_type 2219 2300 -118 1844 112 27 4 chr15 49084594 49084854 -52295667 - AluSq SINE Alu -26 287 22 585 158 93 163 chr15 49084854 49084966 -52295555 + Tigger1 DNA MER2_type 2300 2418 0 777 164 30 8 chr15 49084977 49085111 -52295410 + MER3 DNA MER1_type 2 138 -71 259 187 80 40 chr15 49085157 49085232 -52295289 - MER5A DNA MER1_type -77 112 35 2118 108 29 10 chr15 49085704 49086010 -52294511 + AluSx SINE Alu 1 312 0 294 309 166 40 chr15 49086329 49086504 -52294017 + MIR SINE MIR 47 243 -19 2096 58 0 15 chr15 49087113 49087374 -52293147 - AluY SINE Alu -16 295 39 184 348 97 7 chr15 49088058 49088213 -52292308 - MIR3 SINE MIR -10 198 30 293 130 19 19 chr15 49090544 49090598 -52289923 + AluSc SINE Alu 246 299 0 2163 106 24 3 chr15 49090639 49090932 -52289589 - AluSq SINE Alu -14 299 1 21 0 0 0 chr15 49091601 49091622 -52288899 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 49091948 49091969 -52288552 + AT_rich Low_complexity Low_complexity 1 21 0 227 261 29 0 chr15 49092724 49092793 -52287728 + L1MC4 LINE L1 6648 6718 -1324 443 281 150 12 chr15 49094584 49094744 -52285777 + MER5A DNA MER1_type 4 185 -4 1808 119 14 58 chr15 49094928 49095244 -52285277 - AluSx SINE Alu 0 305 3 2246 109 0 0 chr15 49096288 49096582 -52283939 - AluSx SINE Alu -18 294 1 2020 110 3 60 chr15 49097724 49098043 -52282478 - AluSq SINE Alu -12 301 1 1471 92 64 9 chr15 49099056 49099274 -52281247 + MER30 DNA MER1_type 1 230 0 1642 184 17 3 chr15 49099360 49099653 -52280868 + AluJo SINE Alu 1 297 -15 438 297 150 65 chr15 49101100 49101853 -52278668 + L2 LINE L2 2440 3236 -36 1440 222 71 40 chr15 49102022 49102322 -52278199 + L1ME2 LINE L1 4137 4426 -1720 1403 214 0 23 chr15 49102322 49102625 -52277896 + AluJo SINE Alu 1 296 -6 1440 222 71 40 chr15 49102625 49103069 -52277452 + L1ME2 LINE L1 4426 5082 -1064 881 221 39 0 chr15 49103081 49103262 -52277259 + MER20 DNA MER1_type 32 219 0 502 236 70 0 chr15 49103262 49103419 -52277102 + L1ME2 LINE L1 5075 5242 -904 1847 205 147 15 chr15 49103426 49103632 -52276889 + L1ME2 LINE L1 5369 5547 -617 1040 37 22 0 chr15 49103632 49103767 -52276754 + (CTATT)n Simple_repeat Simple_repeat 1 138 0 1847 205 147 15 chr15 49103767 49104092 -52276429 + L1ME2 LINE L1 5547 5970 -194 940 54 93 266 chr15 49104227 49104337 -52276184 + MER30 DNA MER1_type 1 37 -193 2085 121 3 0 chr15 49104337 49104646 -52275875 + AluSx SINE Alu 1 310 0 940 54 93 266 chr15 49104646 49104812 -52275709 + MER30 DNA MER1_type 37 230 0 2287 170 62 0 chr15 49105232 49105633 -52274888 + MSTB LTR MaLR 1 426 0 28 29 0 0 chr15 49105966 49106001 -52274520 + AT_rich Low_complexity Low_complexity 1 35 0 313 197 0 0 chr15 49106164 49106235 -52274286 - L1MC3 LINE L1 0 7785 7715 906 140 13 19 chr15 49106775 49106932 -52273589 - FRAM SINE Alu -16 160 5 26 50 0 0 chr15 49106994 49107034 -52273487 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr15 49107064 49107086 -52273435 + AT_rich Low_complexity Low_complexity 1 22 0 189 107 0 0 chr15 49108017 49108045 -52272476 + (A)n Simple_repeat Simple_repeat 1 28 0 422 297 65 44 chr15 49108432 49108772 -52271749 - L1MEd LINE L1 -4873 1246 900 314 329 134 49 chr15 49108827 49109192 -52271329 - L1MEd LINE L1 -5279 840 445 5614 143 20 14 chr15 49109649 49110630 -52269891 + L1MA3 LINE L1 5319 6305 0 1121 38 0 0 chr15 49110634 49110766 -52269755 + AluY SINE Alu 1 132 -179 352 176 351 0 chr15 49111071 49111202 -52269319 - MIR SINE MIR -78 184 8 24 53 0 0 chr15 49111518 49111556 -52268965 + AT_rich Low_complexity Low_complexity 1 38 0 1087 178 0 36 chr15 49111868 49112087 -52268434 - MER46A DNA MER2_type 0 236 26 1886 119 66 6 chr15 49112301 49112619 -52267902 - MER44D DNA MER2_type -2 607 1 22 0 0 0 chr15 49112734 49112756 -52267765 + AT_rich Low_complexity Low_complexity 1 22 0 566 251 98 27 chr15 49112874 49113057 -52267464 + MIR SINE MIR 41 236 -26 247 360 56 32 chr15 49113615 49113740 -52266781 - MIR3 SINE MIR -76 132 5 290 303 49 49 chr15 49113985 49114107 -52266414 + MIR SINE MIR 16 137 -71 518 90 26 0 chr15 49114154 49114232 -52266289 + MADE1 DNA Mariner 1 80 0 1847 168 0 32 chr15 49114370 49114685 -52265836 - AluJo SINE Alu -7 305 1 2124 122 0 0 chr15 49118274 49118569 -52261952 - AluSx SINE Alu -13 299 5 2214 110 0 3 chr15 49118792 49119091 -52261430 - AluSg SINE Alu -12 298 1 2187 100 0 0 chr15 49119378 49119657 -52260864 + AluSg SINE Alu 5 283 -27 34 24 0 0 chr15 49120359 49120400 -52260121 + AT_rich Low_complexity Low_complexity 1 41 0 2243 97 0 0 chr15 49120406 49120694 -52259827 - AluSp SINE Alu -25 288 1 2301 102 0 0 chr15 49120854 49121148 -52259373 + AluSx SINE Alu 1 294 -18 870 284 82 3 chr15 49122069 49122320 -52258201 - MIR SINE MIR 0 262 1 771 169 0 0 chr15 49122740 49122858 -52257663 + FLAM_C SINE Alu 1 118 -15 1066 165 91 135 chr15 49123363 49123770 -52256751 + MLT1B LTR MaLR 2 390 0 81 21 0 0 chr15 49124024 49124119 -52256402 + AT_rich Low_complexity Low_complexity 1 95 0 2284 94 0 3 chr15 49124329 49124627 -52255894 - AluY SINE Alu -14 297 1 186 43 0 0 chr15 49124966 49124989 -52255532 + (TTC)n Simple_repeat Simple_repeat 2 24 0 877 162 7 7 chr15 49124991 49125133 -52255388 - FRAM SINE Alu -30 146 5 1578 144 76 4 chr15 49125852 49126150 -52254371 + AluSx SINE Alu 1 317 0 477 355 77 0 chr15 49126436 49126619 -52253902 + L3 LINE CR1 1372 1568 -9 1728 167 41 0 chr15 49126955 49127249 -52253272 + AluJb SINE Alu 1 306 -6 429 285 19 19 chr15 49127294 49127452 -52253069 + L1ME LINE L1 5628 5785 -336 2221 108 47 36 chr15 49127772 49128132 -52252389 + THE1B LTR MaLR 1 364 0 2040 138 14 0 chr15 49128137 49128434 -52252087 - AluSx SINE Alu -11 301 1 816 268 175 39 chr15 49128730 49129129 -52251392 - L2 LINE L2 -1 3312 2968 1621 181 58 0 chr15 49129129 49129249 -52251272 + AluJo SINE Alu 1 113 -199 477 0 0 0 chr15 49129249 49129302 -52251219 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 1621 181 58 0 chr15 49129302 49129457 -52251064 + AluJo SINE Alu 113 292 -20 816 268 175 39 chr15 49129457 49129692 -52250829 - L2 LINE L2 -345 2968 2606 711 279 185 9 chr15 49129692 49130032 -52250489 - L2 LINE L2 -1062 2252 1853 216 0 0 0 chr15 49130515 49130539 -52249982 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 2235 114 0 3 chr15 49131069 49131367 -52249154 - AluSx SINE Alu -15 297 1 351 333 32 26 chr15 49131384 49131540 -52248981 - MIR3 SINE MIR -20 188 32 615 266 109 13 chr15 49132135 49132364 -52248157 + MIR SINE MIR 2 252 -10 181 163 0 93 chr15 49132442 49132485 -52248036 - MIR SINE MIR -154 108 70 448 272 1 1 chr15 49132880 49132992 -52247529 - MIR SINE MIR -68 140 41 437 319 8 17 chr15 49133642 49133761 -52246760 + L2 LINE L2 3138 3255 -17 1355 156 5 18 chr15 49135711 49135929 -52244592 - AluJo SINE Alu -83 229 15 759 263 95 0 chr15 49137185 49137417 -52243104 + L1MEc LINE L1 41 294 -6102 2150 223 72 57 chr15 49137544 49138053 -52242468 + L1MEc LINE L1 1623 2123 -4092 1618 111 123 4 chr15 49138053 49138296 -52242225 + AluSx SINE Alu 1 272 -40 2150 223 72 57 chr15 49138296 49138496 -52242025 + L1MEc LINE L1 2123 2318 -3897 2353 104 0 0 chr15 49138496 49138803 -52241718 - AluSx SINE Alu -5 307 1 2150 223 72 57 chr15 49138803 49139307 -52241214 + L1MEc LINE L1 2318 2836 -3379 1716 175 0 10 chr15 49139317 49139609 -52240912 + AluJo SINE Alu 6 294 -18 2066 113 0 11 chr15 49139617 49139901 -52240620 + AluSg SINE Alu 1 281 -29 209 85 43 21 chr15 49139908 49139955 -52240566 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 243 81 103 11 chr15 49139957 49140044 -52240477 + (TTAAA)n Simple_repeat Simple_repeat 5 99 0 214 83 0 28 chr15 49140044 49140080 -52240441 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 420 178 63 1 chr15 49140080 49140192 -52240329 + L1MEc LINE L1 2821 2940 -3275 1144 214 96 33 chr15 49140246 49140611 -52239910 + MLT1B LTR MaLR 1 388 -2 480 263 136 10 chr15 49141829 49142027 -52238494 - L1M4 LINE L1 -1942 4204 3982 573 246 121 3 chr15 49142258 49142326 -52238195 + L1MC1 LINE L1 6112 6171 -173 1983 92 51 24 chr15 49142326 49142619 -52237902 + AluSx SINE Alu 1 301 -11 573 246 121 3 chr15 49142619 49142758 -52237763 + L1MC1 LINE L1 6171 6344 0 225 316 31 20 chr15 49143602 49143657 -52236864 - MIR SINE MIR 0 262 204 2092 110 7 30 chr15 49143657 49143958 -52236563 - AluSq SINE Alu -19 294 1 225 316 31 20 chr15 49143958 49144000 -52236521 - MIR SINE MIR -58 204 164 1903 111 61 20 chr15 49144202 49144499 -52236022 + AluSx SINE Alu 1 309 -3 455 115 58 11 chr15 49144673 49144760 -52235761 - L1MA6 LINE L1 0 6300 6210 1050 108 6 0 chr15 49144760 49144911 -52235610 + L1M2 LINE L1 5556 5707 -593 501 269 88 19 chr15 49146198 49146358 -52234163 + MIR3 SINE MIR 32 202 -6 704 247 19 0 chr15 49146714 49146868 -52233653 - FRAM SINE Alu -19 157 1 1682 152 34 0 chr15 49147215 49147484 -52233037 - AluJo SINE Alu -34 278 1 2363 91 3 0 chr15 49147535 49147844 -52232677 + AluSg SINE Alu 1 310 0 774 148 7 15 chr15 49147989 49148124 -52232397 - FLAM_C SINE Alu -9 134 1 189 241 52 52 chr15 49148411 49148469 -52232052 + L2 LINE L2 3208 3265 -7 1956 129 0 17 chr15 49149058 49149367 -52231154 + AluSx SINE Alu 1 304 0 269 229 117 12 chr15 49152072 49152194 -52228327 - MIR SINE MIR -47 215 73 1395 150 38 4 chr15 49152230 49152497 -52228024 - L1MA4 LINE L1 -2 6298 6023 387 316 7 14 chr15 49157440 49157579 -52222942 + MIR SINE MIR 3 140 -122 25 65 0 0 chr15 49157906 49157952 -52222569 + AT_rich Low_complexity Low_complexity 1 46 0 239 261 65 65 chr15 49159560 49159652 -52220869 - MIR SINE MIR -159 103 12 202 354 115 35 chr15 49159984 49160097 -52220424 + MIR SINE MIR 18 139 -69 303 261 87 11 chr15 49160306 49160398 -52220123 + MIR SINE MIR 55 153 -109 23 33 0 0 chr15 49161471 49161501 -52219020 + AT_rich Low_complexity Low_complexity 1 30 0 221 261 216 27 chr15 49161966 49162077 -52218444 + L2 LINE L2 2326 2457 -857 271 297 132 39 chr15 49162087 49162269 -52218252 - MIR SINE MIR -12 250 52 1533 171 6 89 chr15 49163179 49163506 -52217015 + AluJo SINE Alu 1 300 -12 310 308 77 8 chr15 49163664 49163794 -52216727 + L2 LINE L2 3163 3301 -12 520 115 10 77 chr15 49164274 49164378 -52216143 + FLAM_A SINE Alu 46 142 0 279 154 48 115 chr15 49164383 49164487 -52216034 + MER94 DNA DNA 15 111 -23 284 403 16 0 chr15 49164679 49164803 -52215718 - L2 LINE L2 -9 3263 3138 341 315 74 31 chr15 49164847 49165009 -52215512 + L2 LINE L2 2882 3050 -222 374 234 25 108 chr15 49165108 49165156 -52215365 - MIR SINE MIR 0 262 212 2146 120 0 7 chr15 49165156 49165457 -52215064 - AluSp SINE Alu -14 299 1 374 234 25 108 chr15 49165457 49165566 -52214955 - MIR SINE MIR -50 212 118 262 260 104 31 chr15 49165951 49166047 -52214474 + MIR3 SINE MIR 92 194 -14 219 88 0 0 chr15 49166435 49166469 -52214052 + (A)n Simple_repeat Simple_repeat 1 34 0 361 254 216 16 chr15 49166477 49166645 -52213876 - MIR3 SINE MIR -8 200 2 2546 47 0 0 chr15 49166993 49167292 -52213229 + AluY SINE Alu 1 299 -12 1408 161 12 28 chr15 49168136 49168384 -52212137 - AluJo SINE Alu -22 290 47 478 304 71 27 chr15 49168893 49169117 -52211404 - MIR SINE MIR -22 240 7 1555 185 22 0 chr15 49169171 49169441 -52211080 + AluJo SINE Alu 7 282 -30 1548 146 19 4 chr15 49169515 49169776 -52210745 + L1PA16 LINE L1 5893 6157 -9 474 267 108 59 chr15 49170099 49170255 -52210266 + L1ME4a LINE L1 5601 5748 -373 345 156 0 0 chr15 49170255 49170319 -52210202 + L1MB3 LINE L1 6118 6181 -2 474 267 108 59 chr15 49170319 49170533 -52209988 + L1ME4a LINE L1 5748 5989 -132 224 320 107 0 chr15 49170857 49170932 -52209589 + L2 LINE L2 3185 3267 -5 231 309 111 24 chr15 49170978 49171104 -52209417 - MIR SINE MIR -60 202 66 707 313 129 30 chr15 49171178 49171612 -52208909 - L2 LINE L2 -5 3308 2832 387 321 16 32 chr15 49171903 49172041 -52208480 + L1MC4 LINE L1 7695 7831 -211 859 226 77 0 chr15 49172041 49172236 -52208285 + MER63A DNA MER1_type 1 210 0 387 321 16 32 chr15 49172236 49172284 -52208237 + L1MC4 LINE L1 7831 7878 -164 * 5121 140 32 24 chr15 49172282 49173208 -52207313 + L1MA6 LINE L1 5362 6295 -5 233 247 86 0 chr15 49173319 49173412 -52207109 + L1MC4 LINE L1 7925 8025 -17 2252 61 0 51 chr15 49173412 49173725 -52206796 - AluY SINE Alu -14 297 1 21 0 0 0 chr15 49173727 49173748 -52206773 + AT_rich Low_complexity Low_complexity 1 21 0 287 369 92 14 chr15 49174793 49175010 -52205511 - MIR SINE MIR -12 250 17 663 292 79 86 chr15 49175937 49176403 -52204118 - L2 LINE L2 0 3313 2851 1629 178 0 59 chr15 49176559 49176880 -52203641 + AluJo SINE Alu 1 302 -10 675 186 55 7 chr15 49177636 49177781 -52202740 - MIR SINE MIR -27 235 84 908 253 30 5 chr15 49177912 49178114 -52202407 + MIR SINE MIR 53 259 -3 765 147 0 29 chr15 49178726 49178862 -52201659 - FLAM_C SINE Alu -11 132 1 22 0 0 0 chr15 49179160 49179182 -52201339 + AT_rich Low_complexity Low_complexity 1 22 0 352 270 225 17 chr15 49179416 49179594 -52200927 - MIR SINE MIR -1 261 47 2527 46 7 0 chr15 49180138 49180445 -52200076 + AluY SINE Alu 1 309 -2 493 230 128 22 chr15 49180816 49181042 -52199479 - MER112 DNA MER1_type -3 253 4 26 0 0 0 chr15 49181636 49181662 -52198859 + AT_rich Low_complexity Low_complexity 1 26 0 242 310 46 23 chr15 49181694 49181781 -52198740 - L3 LINE CR1 -5 1572 1484 431 278 166 71 chr15 49183585 49184038 -52196483 + L1M2 LINE L1 658 1153 -5696 620 58 0 12 chr15 49184267 49184353 -52196168 + (TCC)n Simple_repeat Simple_repeat 1 85 0 313 301 44 35 chr15 49185787 49185900 -52194621 - L2 LINE L2 -5 3267 3154 385 276 48 0 chr15 49186456 49186561 -52193960 + L2 LINE L2 3188 3297 -16 477 169 89 103 chr15 49186765 49186978 -52193543 + MLT1B LTR MaLR 3 212 -178 352 252 230 14 chr15 49187694 49187833 -52192688 - MIR SINE MIR -32 230 62 270 301 39 0 chr15 49187831 49187934 -52192587 - MIR SINE MIR -53 209 103 * 703 284 105 13 chr15 49188070 49188309 -52192212 - MIR SINE MIR 0 262 2 596 161 93 0 chr15 49188642 49188760 -52191761 + MER3 DNA MER1_type 41 122 -87 1646 181 4 11 chr15 49188764 49189045 -52191476 + AluJo SINE Alu 1 279 -33 270 143 91 13 chr15 49189059 49189136 -52191385 + MER3 DNA MER1_type 2223 2305 0 282 59 0 0 chr15 49189138 49189172 -52191349 - U2 snRNA snRNA -153 35 2 * 325 132 0 0 chr15 49189168 49189221 -52191300 + MER3 DNA MER1_type 2291 2343 0 195 42 0 0 chr15 49189221 49189245 -52191276 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 575 218 7 56 chr15 49189246 49189388 -52191133 - AluJo SINE Alu -177 135 1 801 160 194 13 chr15 49189389 49189626 -52190895 + MER3 DNA MER1_type 2334 2613 0 228 35 0 0 chr15 49189931 49189960 -52190561 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1696 169 0 4 chr15 49189962 49190228 -52190293 - AluJb SINE Alu -29 283 19 1330 160 20 75 chr15 49190228 49190533 -52189988 - AluJo SINE Alu -19 293 5 591 207 0 17 chr15 49191236 49191352 -52189169 - FLAM_A SINE Alu -19 114 1 311 320 88 16 chr15 49191507 49191632 -52188889 - L2 LINE L2 -18 3254 3121 2173 78 0 0 chr15 49191635 49191939 -52188582 + AluY SINE Alu 1 304 0 704 270 67 41 chr15 49192271 49192541 -52187980 + MLT1H LTR MaLR 23 299 -250 305 219 96 0 chr15 49192596 49192669 -52187852 + MLT1H LTR MaLR 454 533 -16 388 315 116 68 chr15 49192801 49193268 -52187253 - L2 LINE L2 -638 2676 2188 298 312 0 11 chr15 49193289 49193382 -52187139 - L2 LINE L2 -1315 1999 1908 398 273 30 0 chr15 49194713 49194812 -52185709 - L2 LINE L2 0 3272 3171 1001 247 110 77 chr15 49195316 49196011 -52184510 + L2 LINE L2 2585 3309 -4 191 326 98 23 chr15 49196093 49196225 -52184296 - L2 LINE L2 -970 2344 2203 1994 161 0 13 chr15 49196295 49196611 -52183910 + AluSx SINE Alu 1 312 0 24 0 0 0 chr15 49196667 49196691 -52183830 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr15 49196842 49196864 -52183657 + AT_rich Low_complexity Low_complexity 1 22 0 630 165 136 0 chr15 49196864 49196967 -52183554 - FLAM_C SINE Alu -25 118 2 2265 105 7 0 chr15 49197055 49197351 -52183170 + AluSp SINE Alu 1 298 -15 210 71 0 0 chr15 49197370 49197398 -52183123 + (CA)n Simple_repeat Simple_repeat 2 29 0 390 254 235 19 chr15 49197742 49198065 -52182456 - L1M4 LINE L1 -1488 4658 4266 2173 125 0 0 chr15 49198093 49198382 -52182139 - AluSx SINE Alu -23 289 1 556 301 81 71 chr15 49198395 49198570 -52181951 - L1M4 LINE L1 -1963 4183 4011 1430 201 35 0 chr15 49198570 49198853 -52181668 + AluJo SINE Alu 2 294 -18 556 301 81 71 chr15 49198853 49198866 -52181655 - L1M4 LINE L1 -2135 4011 4000 1775 177 11 0 chr15 49198866 49199149 -52181372 + AluJb SINE Alu 1 286 -26 556 301 81 71 chr15 49199149 49199646 -52180875 - L1M4 LINE L1 -2146 4000 3485 1646 160 4 8 chr15 49199646 49199930 -52180591 - AluJb SINE Alu 0 312 38 556 301 81 71 chr15 49199930 49200046 -52180475 - L1M4 LINE L1 -2661 3485 3372 1206 232 53 44 chr15 49201158 49201386 -52179135 - L1ME LINE L1 -413 5751 5527 2267 103 0 10 chr15 49201386 49201697 -52178824 + AluY SINE Alu 4 311 0 1206 232 53 44 chr15 49201697 49202010 -52178511 - L1ME LINE L1 -637 5527 5210 440 286 86 84 chr15 49202427 49202706 -52177815 - L2 LINE L2 -346 2968 2686 1528 178 129 75 chr15 49202706 49203188 -52177333 - Charlie4a DNA MER1_type 0 508 1 440 286 86 84 chr15 49203188 49203338 -52177183 - L2 LINE L2 -628 2686 2538 902 264 104 47 chr15 49203544 49204260 -52176261 - L1ME3A LINE L1 -149 6021 5176 2247 113 0 7 chr15 49204753 49205063 -52175458 - AluSg SINE Alu -2 308 1 1661 160 42 0 chr15 49205093 49205381 -52175140 + L1MC1 LINE L1 6016 6315 -18 2873 115 24 5 chr15 49205966 49206384 -52174137 + L1PA16 LINE L1 5738 6163 -3 1559 234 42 26 chr15 49206388 49206934 -52173587 + L1ME1 LINE L1 5287 6062 -104 479 209 157 0 chr15 49206996 49207111 -52173410 + L1MC4a LINE L1 5383 5515 -2293 1255 231 88 30 chr15 49207113 49207289 -52173232 + L1MC4a LINE L1 5557 5721 -2087 1502 49 0 27 chr15 49207289 49207474 -52173047 + L1PA6 LINE L1 5973 6152 -2 1255 231 88 30 chr15 49207474 49207738 -52172783 + L1MC4a LINE L1 5721 6023 -1785 7791 43 3 1 chr15 49207739 49209134 -52171387 + L1PA6 LINE L1 4757 6154 0 1083 230 98 62 chr15 49209204 49209652 -52170869 - L1ME3 LINE L1 -1 6161 5698 1834 250 107 63 chr15 49209665 49211276 -52169245 + L1MB8 LINE L1 5782 6178 0 * 1953 233 174 18 chr15 49210658 49211382 -52169139 + L1MC4 LINE L1 7064 7900 -142 258 211 0 0 chr15 49212542 49212599 -52167922 - MER102b DNA MER1_type -6 335 279 203 189 0 0 chr15 49212687 49212724 -52167797 + A-rich Low_complexity Low_complexity 1 37 0 744 253 95 55 chr15 49214034 49214522 -52165999 + L2 LINE L2 2795 3313 0 320 292 78 32 chr15 49214529 49214683 -52165838 - L2 LINE L2 0 3313 3153 352 180 34 34 chr15 49215185 49215274 -52165247 + MER102b DNA MER1_type 253 341 0 559 139 13 0 chr15 49215536 49215615 -52164906 - AluSg/x SINE Alu -15 294 215 1305 202 112 16 chr15 49215649 49216102 -52164419 - MLT1G3 LTR MaLR -4 526 1 539 261 92 16 chr15 49216106 49216290 -52164231 - MARNA DNA Mariner -246 340 143 388 214 29 0 chr15 49217020 49217090 -52163431 - MIR3 SINE MIR -22 186 115 472 262 55 69 chr15 49217232 49217434 -52163087 + MIR SINE MIR 18 216 -46 2341 89 0 49 chr15 49217702 49218028 -52162493 + AluY SINE Alu 1 310 -1 1068 256 85 98 chr15 49218152 49218272 -52162249 - MER115 DNA AcHobo 0 4031 3911 2001 125 7 33 chr15 49218272 49218576 -52161945 - AluSx SINE Alu -14 298 3 1068 256 85 98 chr15 49218576 49219162 -52161359 - MER115 DNA AcHobo -120 3911 3 848 188 0 0 chr15 49219545 49219678 -52160843 + FLAM_C SINE Alu 1 133 0 2048 146 7 0 chr15 49219863 49220172 -52160349 - AluSx SINE Alu -1 311 1 1865 120 78 0 chr15 49220941 49221225 -52159296 + AluSx SINE Alu 1 306 -6 2290 104 3 0 chr15 49222519 49222828 -52157693 - AluY SINE Alu -1 310 1 200 227 30 15 chr15 49223018 49223084 -52157437 - L2 LINE L2 -1357 1957 1891 1063 184 5 10 chr15 49223892 49224088 -52156433 + AluJo SINE Alu 118 312 0 2233 118 42 27 chr15 49224974 49225370 -52155151 - L1P4 LINE L1 -432 5734 5328 557 172 0 0 chr15 49225376 49225463 -52155058 - FLAM SINE Alu -12 131 45 350 300 97 6 chr15 49225481 49225811 -52154710 - L1M4 LINE L1 -865 5281 4922 1133 182 161 4 chr15 49225886 49226128 -52154393 - AluSg SINE Alu -30 280 1 524 300 38 9 chr15 49226281 49226491 -52154030 - L1M4 LINE L1 -1444 4702 4487 231 294 134 41 chr15 49227609 49227803 -52152718 - L2 LINE L2 -468 2846 2635 1111 237 12 8 chr15 49229644 49229889 -52150632 - MIR SINE MIR -3 259 14 222 37 0 0 chr15 49230729 49230756 -52149765 + (T)n Simple_repeat Simple_repeat 1 27 0 981 217 219 19 chr15 49230955 49231522 -52148999 + Charlie7 DNA MER1_type 1918 2597 -15 2941 94 3 0 chr15 49231765 49232128 -52148393 + THE1B LTR MaLR 1 364 0 1355 249 60 30 chr15 49232390 49232586 -52147935 + LTR16C LTR ERVL 2 191 -300 3956 102 0 4 chr15 49232586 49233097 -52147424 - MER9 LTR ERVK 0 511 3 1355 249 60 30 chr15 49233097 49233330 -52147191 + LTR16C LTR ERVL 191 444 -47 580 282 68 70 chr15 49233362 49234026 -52146495 - L1MEd LINE L1 -4668 1463 799 945 150 0 0 chr15 49234026 49234159 -52146362 - FLAM_C SINE Alu 0 133 1 580 282 68 70 chr15 49234159 49234340 -52146181 - L1MEd LINE L1 -5332 799 717 1887 121 54 0 chr15 49234340 49234620 -52145901 - AluJo SINE Alu -15 297 3 580 282 68 70 chr15 49234620 49234780 -52145741 - L1MEd LINE L1 -5414 717 558 1852 215 26 16 chr15 49234856 49235242 -52145279 + MLT1B LTR MaLR 1 390 0 379 285 85 35 chr15 49235268 49235468 -52145053 - L1MEd LINE L1 -5898 221 12 2197 107 20 0 chr15 49235630 49235930 -52144591 + AluSx SINE Alu 1 306 -6 838 99 0 0 chr15 49236724 49236835 -52143686 - AluSc SINE Alu -9 300 190 730 197 0 0 chr15 49238393 49238510 -52142011 - FLAM_C SINE Alu -16 117 1 1304 178 171 4 chr15 49238687 49238945 -52141576 + AluJo SINE Alu 2 302 0 340 318 82 15 chr15 49239941 49240271 -52140250 + L1MC5 LINE L1 7312 7663 -298 198 0 0 0 chr15 49240760 49240782 -52139739 + (A)n Simple_repeat Simple_repeat 1 22 0 1480 168 93 4 chr15 49241876 49242156 -52138365 + AluJo SINE Alu 4 308 -4 952 165 18 24 chr15 49242309 49242479 -52138042 + AluJo SINE Alu 118 286 -26 1190 250 37 18 chr15 49243177 49243505 -52137016 - L1MD3 LINE L1 -9 7986 7653 1002 117 62 19 chr15 49243506 49243668 -52136853 - AluJb SINE Alu -3 309 141 2458 120 30 8 chr15 49243671 49244038 -52136483 + THE1C LTR MaLR 1 375 0 252 122 0 0 chr15 49244039 49244088 -52136433 + LTR66 LTR ERVL 391 439 -171 280 72 14 58 chr15 49244111 49244180 -52136341 + (TA)n Simple_repeat Simple_repeat 1 66 0 643 120 0 74 chr15 49244218 49244326 -52136195 - AluJ/FLAM SINE Alu -211 101 2 2704 192 51 29 chr15 49244326 49244976 -52135545 - L1MC4a LINE L1 -315 7493 6830 295 183 113 0 chr15 49244982 49245053 -52135468 - L1MA9 LINE L1 -6 6306 6228 2109 129 0 3 chr15 49245291 49245578 -52134943 + AluSx SINE Alu 5 290 -22 978 160 33 6 chr15 49245688 49245869 -52134652 + L1M4 LINE L1 16 201 -6341 2612 109 51 9 chr15 49245869 49246299 -52134222 + LTR7 LTR ERV1 1 448 -2 7318 93 26 27 chr15 49246301 49247391 -52133130 + HERVH LTR ERV1 1 1089 -6624 14697 136 10 22 chr15 49247499 49249802 -52130719 + HERVH LTR ERV1 1719 3993 -3720 1854 116 9 14 chr15 49249785 49250095 -52130426 + HERVH LTR ERV1 3954 5144 -1947 * 5708 145 33 1 chr15 49250264 49251153 -52129368 + HERVH LTR ERV1 4233 5149 -2564 1389 129 18 5 chr15 49251154 49251371 -52129150 + HERVH LTR ERV1 5600 5819 -1894 * 2387 98 50 13 chr15 49251369 49251747 -52128774 + HERVH LTR ERV1 7322 7713 0 2691 74 93 29 chr15 49251747 49252168 -52128353 + LTR7 LTR ERV1 1 448 -2 547 197 79 118 chr15 49252170 49252207 -52128314 + L1M4 LINE L1 197 234 -6308 1859 241 14 81 chr15 49252207 49252863 -52127658 + LTR9 LTR ERV1 1 612 0 2289 117 16 29 chr15 49252863 49253239 -52127282 + THE1C LTR MaLR 5 375 0 547 197 79 118 chr15 49253239 49253428 -52127093 + L1M4 LINE L1 232 415 -6127 2936 135 28 7 chr15 49253428 49253886 -52126635 - MER41E LTR ERV1 0 512 45 925 136 0 0 chr15 49254028 49254153 -52126368 + FLAM_C SINE Alu 1 125 -18 770 214 11 45 chr15 49254164 49254282 -52126239 + L1M4 LINE L1 462 574 -5968 3218 99 24 2 chr15 49254282 49254736 -52125785 + MER4C LTR ERV1 1 464 -1 770 214 11 45 chr15 49254736 49254795 -52125726 + L1M4 LINE L1 574 633 -5909 771 186 36 0 chr15 49254804 49254944 -52125577 - MLT2C1 LTR ERVL -252 145 1 902 214 9 19 chr15 49255072 49255287 -52125234 + L1MC4 LINE L1 7829 8041 -1 254 207 0 0 chr15 49255298 49255356 -52125165 + L1ME LINE L1 5669 5726 -438 1148 166 81 122 chr15 49255356 49255674 -52124847 + AluJb SINE Alu 1 306 0 2291 104 0 10 chr15 49255736 49256044 -52124477 - AluSc SINE Alu -2 307 3 650 147 0 20 chr15 49256097 49256199 -52124322 + FLAM_A SINE Alu 20 119 -23 697 249 89 0 chr15 49256251 49256488 -52124033 - MIR SINE MIR -4 258 1 222 37 0 0 chr15 49256969 49256996 -52123525 + (T)n Simple_repeat Simple_repeat 1 27 0 204 40 0 0 chr15 49257451 49257476 -52123045 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 186 43 0 0 chr15 49258839 49258862 -52121659 + (A)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr15 49258957 49258980 -52121541 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr15 49259278 49259307 -52121214 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr15 49259354 49259378 -52121143 + AT_rich Low_complexity Low_complexity 1 24 0 252 86 0 0 chr15 49260351 49260386 -52120135 + (T)n Simple_repeat Simple_repeat 1 35 0 396 0 0 0 chr15 49261068 49261112 -52119409 + (A)n Simple_repeat Simple_repeat 1 44 0 2483 70 20 0 chr15 49261693 49261994 -52118527 + AluSx SINE Alu 1 307 -5 25 0 0 0 chr15 49264457 49264482 -52116039 + AT_rich Low_complexity Low_complexity 1 25 0 258 336 8 8 chr15 49265007 49265129 -52115392 + MIR3 SINE MIR 44 165 -43 184 313 131 0 chr15 49265126 49265225 -52115296 + MIR SINE MIR 102 213 -49 * 461 147 31 110 chr15 49266458 49266574 -52113947 - Charlie7 DNA MER1_type -36 2576 2475 1503 164 42 35 chr15 49266574 49266861 -52113660 - AluJb SINE Alu -23 289 1 461 147 31 110 chr15 49266861 49266907 -52113614 - Charlie7 DNA MER1_type -137 2475 2427 248 281 70 9 chr15 49267499 49267613 -52112908 - L2 LINE L2 -219 3053 2933 534 325 30 17 chr15 49269120 49269357 -52111164 + LTR16A LTR ERVL 211 450 0 2016 154 0 0 chr15 49269378 49269677 -52110844 + AluSx SINE Alu 1 299 -13 425 187 0 22 chr15 49269949 49270040 -52110481 - L2 LINE L2 -1015 2299 2211 207 167 0 0 chr15 49270959 49270995 -52109526 + GA-rich Low_complexity Low_complexity 2 37 0 541 222 104 7 chr15 49271536 49271680 -52108841 + MER103 DNA DNA 9 166 0 481 238 254 19 chr15 49271728 49271984 -52108537 + MER5C DNA MER1_type 9 324 0 440 69 21 41 chr15 49272281 49272365 -52108156 - MSTD LTR MaLR -286 79 1 327 260 48 55 chr15 49272366 49272512 -52108009 - MIR SINE MIR -61 201 57 830 156 112 49 chr15 49273106 49273330 -52107191 + L1MB8 LINE L1 5934 6171 -7 332 291 45 34 chr15 49275002 49275181 -52105340 - MIR SINE MIR -48 214 34 4049 122 6 6 chr15 49275701 49276334 -52104187 + L1MA4 LINE L1 5664 6296 -4 755 231 23 0 chr15 49278181 49278354 -52102167 - MER5B DNA MER1_type 0 178 2 412 212 277 0 chr15 49278368 49278505 -52102016 - MER5A DNA MER1_type -6 183 9 246 230 127 111 chr15 49278542 49278668 -52101853 + MER5A DNA MER1_type 12 139 -50 528 270 64 14 chr15 49278882 49279147 -52101374 + L1ME4a LINE L1 5444 5728 -393 181 231 0 77 chr15 49279195 49279247 -52101274 + L2 LINE L2 3189 3236 -36 520 274 89 25 chr15 49279259 49279427 -52101094 + L1ME4a LINE L1 5767 5923 -198 345 24 0 0 chr15 49279427 49279469 -52101052 + (TG)n Simple_repeat Simple_repeat 2 43 0 520 274 89 25 chr15 49279469 49279614 -52100907 + L1ME4a LINE L1 5923 6100 -21 647 75 11 0 chr15 49279654 49279748 -52100773 - L1PB1 LINE L1 -2 6149 6055 231 274 48 0 chr15 49279876 49279960 -52100561 + MER5A DNA MER1_type 77 166 -12 2494 67 0 0 chr15 49280103 49280400 -52100121 + AluY SINE Alu 1 297 -14 394 218 226 24 chr15 49280930 49281054 -52099467 - MER5A DNA MER1_type -2 187 39 1621 236 31 104 chr15 49281121 49281888 -52098633 + L1MC4 LINE L1 6379 7110 -932 387 0 0 0 chr15 49282113 49282156 -52098365 + (CA)n Simple_repeat Simple_repeat 2 44 0 2174 102 3 0 chr15 49282279 49282590 -52097931 - AluSq SINE Alu 0 312 1 1881 115 8 0 chr15 49282940 49283192 -52097329 + AluSx SINE Alu 43 296 -16 360 0 0 0 chr15 49283443 49283483 -52097038 + (CA)n Simple_repeat Simple_repeat 2 41 0 22 56 0 0 chr15 49283661 49283697 -52096824 + AT_rich Low_complexity Low_complexity 1 36 0 252 254 0 15 chr15 49284767 49284834 -52095687 + L2 LINE L2 3206 3271 -1 587 231 147 0 chr15 49284871 49285027 -52095494 - MER5A DNA MER1_type -2 187 9 183 204 107 68 chr15 49285558 49285661 -52094860 + L2 LINE L2 2930 3036 -236 369 0 0 0 chr15 49285688 49285729 -52094792 + (CA)n Simple_repeat Simple_repeat 2 42 0 221 304 163 0 chr15 49285754 49285846 -52094675 + L2 LINE L2 3141 3247 -25 665 280 49 49 chr15 49286293 49286597 -52093924 - L1ME LINE L1 -376 5786 5483 395 228 97 0 chr15 49286820 49286934 -52093587 - MIR3 SINE MIR -9 199 75 2119 79 10 27 chr15 49287086 49287378 -52093143 - AluSc SINE Alu -22 287 1 838 208 23 0 chr15 49289661 49289834 -52090687 + MER5B DNA MER1_type 2 178 0 1057 103 0 0 chr15 49290024 49290170 -52090351 - L1PA11 LINE L1 0 6174 6029 324 83 0 0 chr15 49297459 49297507 -52083014 + (TGG)n Simple_repeat Simple_repeat 1 48 0 192 40 0 0 chr15 49298003 49298028 -52082493 + (TC)n Simple_repeat Simple_repeat 1 25 0 336 83 0 0 chr15 49298029 49298077 -52082444 + (TG)n Simple_repeat Simple_repeat 2 49 0 23 0 0 0 chr15 49298122 49298145 -52082376 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr15 49298353 49298373 -52082148 + (CCG)n Simple_repeat Simple_repeat 3 22 0 232 237 37 118 chr15 49301085 49301220 -52079301 + L2 LINE L2 3189 3312 -1 243 0 0 0 chr15 49302360 49302387 -52078134 + (T)n Simple_repeat Simple_repeat 1 27 0 312 261 46 46 chr15 49305707 49305837 -52074684 - L1M4 LINE L1 -2944 3202 3073 204 265 19 19 chr15 49307988 49308150 -52072371 + CT-rich Low_complexity Low_complexity 3 164 0 22 35 0 0 chr15 49308564 49308593 -52071928 + AT_rich Low_complexity Low_complexity 1 29 0 468 0 0 0 chr15 49309407 49309459 -52071062 + (TG)n Simple_repeat Simple_repeat 2 53 0 189 0 0 0 chr15 49309756 49309777 -52070744 + (CTG)n Simple_repeat Simple_repeat 2 22 0 25 31 0 0 chr15 49313912 49313944 -52066577 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr15 49314114 49314134 -52066387 + (CGG)n Simple_repeat Simple_repeat 2 21 0 598 248 158 13 chr15 49316860 49317075 -52063446 + MIR SINE MIR 17 257 -5 1406 160 46 36 chr15 49319194 49319500 -52061021 - AluJo SINE Alu -3 309 1 182 130 109 43 chr15 49320120 49320166 -52060355 - L3b LINE CR1 -3 1580 1532 909 271 79 75 chr15 49320298 49320781 -52059740 + MLT1J LTR MaLR 27 511 0 2040 111 21 0 chr15 49320932 49321221 -52059300 + AluSx SINE Alu 1 295 -17 1475 197 4 11 chr15 49321235 49321514 -52059007 - AluJo SINE Alu -35 277 1 1860 194 66 16 chr15 49321516 49321893 -52058628 + MSTD LTR MaLR 1 396 0 298 216 68 0 chr15 49321893 49321981 -52058540 + MER20B DNA MER1_type 558 651 -132 2148 82 10 13 chr15 49322282 49322585 -52057936 - AluSg SINE Alu -7 303 2 234 428 14 7 chr15 49324248 49324393 -52056128 - L2 LINE L2 -433 2881 2736 14889 81 15 1 chr15 49324504 49325138 -52055383 - L1PA7 LINE L1 0 6154 5530 1975 101 31 7 chr15 49325138 49325424 -52055097 + AluSp SINE Alu 3 295 -18 14889 81 15 1 chr15 49325424 49327602 -52052919 - L1PA7 LINE L1 -624 5530 3322 649 297 59 59 chr15 49327602 49327992 -52052529 - L2 LINE L2 -611 2703 2314 248 89 0 22 chr15 49328790 49328835 -52051686 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 536 246 0 9 chr15 49328845 49328959 -52051562 - MER81 DNA DNA 0 114 2 200 176 0 0 chr15 49328963 49328997 -52051524 + (TG)n Simple_repeat Simple_repeat 1 34 0 2129 92 0 22 chr15 49329596 49329912 -52050609 + AluSc SINE Alu 1 309 0 204 188 43 0 chr15 49330132 49330201 -52050320 + (TA)n Simple_repeat Simple_repeat 2 73 0 1732 153 21 0 chr15 49330311 49330593 -52049928 + AluSx SINE Alu 7 294 -18 489 301 116 44 chr15 49330784 49331173 -52049348 - L1MC4a LINE L1 -1882 5926 5510 740 297 93 13 chr15 49331666 49331902 -52048619 + MIR SINE MIR 2 256 -6 193 174 65 0 chr15 49332397 49332443 -52048078 + L2 LINE L2 3264 3312 -1 180 0 0 0 chr15 49332768 49332788 -52047733 + (CATTC)n Simple_repeat Simple_repeat 2 21 0 38939 75 3 8 chr15 49332925 49338876 -52041645 + L1PA6 LINE L1 239 6152 -2 484 276 78 58 chr15 49339090 49339168 -52041353 - L1ME3A LINE L1 -293 5877 5802 2376 42 0 0 chr15 49339168 49339452 -52041069 - AluY SINE Alu -14 297 14 484 276 78 58 chr15 49339452 49339616 -52040905 - L1ME3A LINE L1 -368 5802 5630 367 233 135 8 chr15 49339655 49339788 -52040733 - L1ME3A LINE L1 -643 5523 5374 609 273 49 72 chr15 49339790 49339914 -52040607 - L1ME4a LINE L1 -187 5934 5809 1841 170 3 10 chr15 49339914 49340225 -52040296 - AluSx SINE Alu -3 309 1 609 273 49 72 chr15 49340225 49340489 -52040032 - L1ME4a LINE L1 -312 5809 5555 186 324 162 0 chr15 49340975 49341043 -52039478 - L2 LINE L2 -8 3305 3227 309 271 130 78 chr15 49342519 49342803 -52037718 - L1MC4a LINE L1 -1667 6141 5843 206 346 159 0 chr15 49342820 49342927 -52037594 - L2 LINE L2 -8 3305 3182 365 103 15 0 chr15 49343301 49343369 -52037152 + (TG)n Simple_repeat Simple_repeat 2 70 0 204 231 261 0 chr15 49344042 49344107 -52036414 - L3 LINE CR1 -183 1394 1313 743 260 73 62 chr15 49344173 49344834 -52035687 - L1MC5 LINE L1 -34 7927 7260 206 215 92 100 chr15 49344908 49345038 -52035483 + MER5A DNA MER1_type 60 188 -1 473 251 36 2 chr15 49345070 49345264 -52035257 + MLT2B1 LTR ERVL 1 202 -212 718 206 13 27 chr15 49345515 49345692 -52034829 + MLT2B1 LTR ERVL 321 493 -22 256 111 37 74 chr15 49345709 49345763 -52034758 + MLT2B1 LTR ERVL 466 517 -3 461 191 19 19 chr15 49345794 49345899 -52034622 + MER103 DNA DNA 55 159 -7 2588 125 20 20 chr15 49345901 49346272 -52034249 + MSTB LTR MaLR 1 374 -52 2511 99 57 8 chr15 49346272 49346655 -52033866 - L1PA10 LINE L1 0 6168 5767 2588 125 20 20 chr15 49346655 49346684 -52033837 + MSTB LTR MaLR 373 401 -25 307 311 58 24 chr15 49346768 49346974 -52033547 - L3 LINE CR1 -264 1313 1101 483 227 176 11 chr15 49347180 49347356 -52033165 - MLT1K LTR MaLR -65 523 319 241 266 0 0 chr15 49347656 49347720 -52032801 - MIR SINE MIR -82 126 63 362 315 9 9 chr15 49349557 49349668 -52030853 + CT-rich Low_complexity Low_complexity 2 112 0 7440 47 0 1 chr15 49350172 49350597 -52029924 + L1PA5 LINE L1 4584 5008 -1146 2332 56 0 21 chr15 49350597 49350907 -52029614 - AluY SINE Alu 0 305 2 7440 47 0 1 chr15 49350907 49352065 -52028456 + L1PA5 LINE L1 5008 6149 -5 227 313 0 24 chr15 49352105 49352188 -52028333 - MIR SINE MIR -2 260 180 1867 142 76 33 chr15 49352212 49352579 -52027942 + MLT1B LTR MaLR 1 383 -7 603 250 0 8 chr15 49353696 49353828 -52026693 + MIR3 SINE MIR 39 169 -39 371 299 24 31 chr15 49354212 49354289 -52026232 - L2 LINE L2 -11 3261 3184 1956 153 3 7 chr15 49354289 49354583 -52025938 + AluJb SINE Alu 1 293 -19 371 299 24 31 chr15 49354583 49354632 -52025889 - L2 LINE L2 -88 3184 3136 2016 139 18 52 chr15 49355470 49355858 -52024663 - THE1C LTR MaLR 0 375 1 491 261 27 17 chr15 49357412 49357594 -52022927 + MIR SINE MIR 31 206 -56 1369 176 0 8 chr15 49359269 49359507 -52021014 + MER46A DNA MER2_type 1 236 0 297 0 0 0 chr15 49359577 49359610 -52020911 + (TG)n Simple_repeat Simple_repeat 2 34 0 29 0 0 0 chr15 49359733 49359762 -52020759 + AT_rich Low_complexity Low_complexity 1 29 0 602 244 65 83 chr15 49360072 49360223 -52020298 - L1MC5 LINE L1 -35 7926 7774 935 168 6 0 chr15 49360223 49360384 -52020137 - FRAM SINE Alu 0 166 5 602 244 65 83 chr15 49360384 49360666 -52019855 - L1MC5 LINE L1 -187 7774 7501 1211 214 82 20 chr15 49360666 49360969 -52019552 - MER2 DNA MER2_type 0 345 24 504 293 7 7 chr15 49361026 49361176 -52019345 + MIR3 SINE MIR 30 179 -29 594 313 179 27 chr15 49361519 49361995 -52018526 - L3 LINE CR1 -3 1574 1027 1990 140 31 0 chr15 49365174 49365467 -52015054 + AluSx SINE Alu 11 312 0 347 137 36 129 chr15 49365467 49365606 -52014915 + L1MC5 LINE L1 7819 7944 -17 404 250 18 18 chr15 49367675 49367787 -52012734 + MIR3 SINE MIR 90 201 -7 241 244 26 13 chr15 49368933 49369011 -52011510 - LTR67 LTR ERVL -5 552 474 412 331 63 0 chr15 49369297 49369439 -52011082 - LTR67 LTR ERVL -368 189 39 2387 106 23 17 chr15 49369605 49369955 -52010566 + THE1C LTR MaLR 1 352 -23 940 208 66 0 chr15 49370095 49370321 -52010200 + LTR16C LTR ERVL 241 481 -10 207 0 0 0 chr15 49370454 49370477 -52010044 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 361 233 33 92 chr15 49371585 49371630 -52008891 - L2 LINE L2 -16 3297 3251 836 240 36 44 chr15 49371630 49371804 -52008717 - MER58A DNA MER1_type -2197 223 50 1771 183 0 3 chr15 49371804 49372094 -52008427 + AluJo SINE Alu 3 291 -21 836 240 36 44 chr15 49372094 49372144 -52008377 - MER58A DNA MER1_type -2370 50 1 361 233 33 92 chr15 49372144 49372218 -52008303 - L2 LINE L2 -62 3251 3185 1116 250 105 33 chr15 49372651 49372756 -52007765 + L2 LINE L2 2584 2680 -633 2240 116 0 10 chr15 49372756 49373050 -52007471 + AluSx SINE Alu 1 291 -21 1116 250 105 33 chr15 49373050 49373608 -52006913 + L2 LINE L2 2680 3288 -25 1343 164 131 40 chr15 49373609 49373907 -52006614 - THE1A LTR MaLR 0 355 31 2368 86 3 32 chr15 49374008 49374323 -52006198 - AluSg SINE Alu -4 306 1 236 216 111 92 chr15 49375977 49376130 -52004391 - L1ME4a LINE L1 -2 6119 5964 404 226 75 0 chr15 49377514 49377620 -52002901 - L2 LINE L2 -8 3305 3192 958 216 15 0 chr15 49378111 49378315 -52002206 - LTR16A1 LTR ERVL -5 452 246 446 273 7 53 chr15 49378360 49378510 -52002011 - LTR16A1 LTR ERVL -306 151 9 256 367 36 28 chr15 49378588 49378980 -52001541 - L2 LINE L2 -746 2568 2174 531 254 82 26 chr15 49379978 49380254 -52000267 - L1ME1 LINE L1 -9 6155 5912 2064 108 0 0 chr15 49380260 49380529 -51999992 + AluSq SINE Alu 27 295 -18 210 221 59 44 chr15 49381558 49381626 -51998895 - MIR SINE MIR -123 139 71 707 253 52 0 chr15 49382805 49382959 -51997562 + MER96 DNA MER1_type? 14 175 0 681 243 44 34 chr15 49383636 49383842 -51996679 + MIR SINE MIR 52 259 -3 259 307 88 18 chr15 49384663 49384777 -51995744 + MIR SINE MIR 30 151 -57 312 151 0 54 chr15 49385829 49385922 -51994599 + CT-rich Low_complexity Low_complexity 2 89 0 216 67 0 0 chr15 49386204 49386234 -51994287 + (T)n Simple_repeat Simple_repeat 1 30 0 180 125 0 0 chr15 49386917 49386949 -51993572 + (TG)n Simple_repeat Simple_repeat 1 32 0 505 333 33 29 chr15 49388657 49388900 -51991621 + MIR SINE MIR 9 252 -10 406 262 56 0 chr15 49390545 49390652 -51989869 + MIR SINE MIR 34 146 -62 340 330 89 8 chr15 49391156 49391392 -51989129 + L2 LINE L2 2404 2658 -656 205 262 0 33 chr15 49391710 49391771 -51988750 + L2 LINE L2 3010 3068 -245 287 322 0 22 chr15 49391828 49391918 -51988603 - MIR SINE MIR -128 134 47 191 286 63 16 chr15 49391924 49391987 -51988534 - MIR SINE MIR -188 74 9 567 236 30 42 chr15 49391987 49392152 -51988369 + MER117 DNA MER1_type 1 163 -34 2272 102 0 10 chr15 49392364 49392669 -51987852 - AluSx SINE Alu -10 302 1 396 312 151 19 chr15 49393525 49393849 -51986672 + L2 LINE L2 2343 2709 -605 237 67 0 0 chr15 49393943 49393973 -51986548 - LTR6A LTR ERV1 -462 102 73 4894 144 5 14 chr15 49394894 49395702 -51984819 - L1MC1 LINE L1 -14 6319 5519 3313 160 93 152 chr15 49395741 49396003 -51984518 + L1MA10 LINE L1 3313 3589 -2557 1039 175 0 11 chr15 49396003 49396180 -51984341 - FRAM SINE Alu -1 175 1 3313 160 93 152 chr15 49396180 49396965 -51983556 + L1MA10 LINE L1 3589 4464 -1682 * 5012 187 10 18 chr15 49396954 49398122 -51982399 + L1MA10 LINE L1 5176 6334 0 565 327 138 4 chr15 49398128 49398547 -51981974 + L2 LINE L2 2713 3280 -33 270 307 34 0 chr15 49398583 49398671 -51981850 + MIR3 SINE MIR 97 187 -21 791 131 7 7 chr15 49398705 49398850 -51981671 - L1PA13 LINE L1 0 6163 6019 187 320 0 0 chr15 49399325 49399375 -51981146 + L2 LINE L2 3258 3307 -6 260 277 141 96 chr15 49400022 49400242 -51980279 + MIR SINE MIR 32 261 -1 298 267 158 42 chr15 49400477 49400597 -51979924 + L2 LINE L2 3180 3313 0 441 343 59 31 chr15 49400862 49401148 -51979373 - L1MC4a LINE L1 -1926 5882 5589 378 285 151 52 chr15 49402716 49403062 -51977459 - L1ME4a LINE L1 -103 6018 5610 240 317 16 73 chr15 49403700 49403934 -51976587 - L2 LINE L2 -5 3308 3005 420 267 92 34 chr15 49403950 49404242 -51976279 + L1ME2 LINE L1 5621 5929 -235 11826 154 19 17 chr15 49405899 49409410 -51971111 - L1MA3 LINE L1 0 6305 2785 2020 194 47 0 chr15 49410105 49410548 -51969973 - L1ME1 LINE L1 -4 6957 6494 11849 133 15 85 chr15 49410560 49413058 -51967463 + L1PA2 LINE L1 13 2334 -3812 20231 58 0 2 chr15 49413058 49416494 -51964027 + L1PA2 LINE L1 2711 6155 0 2985 70 0 0 chr15 49416494 49416872 -51963649 + L1PA6 LINE L1 5770 6153 -1 3428 225 45 28 chr15 49416873 49418308 -51962213 - L1ME1 LINE L1 -458 6503 5052 316 138 86 0 chr15 49418325 49418383 -51962138 - L1MC1 LINE L1 -1 6332 6270 1860 223 13 22 chr15 49418386 49418924 -51961597 + L1MC/D LINE L1 4243 4775 -1371 2677 190 12 13 chr15 49418927 49419672 -51960849 + L1MC/D LINE L1 5006 5749 -584 1766 244 29 24 chr15 49419670 49420253 -51960268 - L1ME1 LINE L1 -1878 5063 4478 * 1391 272 159 57 chr15 49420250 49421531 -51958990 - L1ME1 LINE L1 -4902 1521 110 * 26 30 0 0 chr15 49421564 49421597 -51958924 + AT_rich Low_complexity Low_complexity 1 33 0 2213 97 3 24 chr15 49421756 49422054 -51958467 - AluSx SINE Alu -20 292 1 263 227 154 27 chr15 49422194 49422304 -51958217 + MER117 DNA MER1_type 44 167 -30 354 74 0 0 chr15 49423040 49423094 -51957427 + (TG)n Simple_repeat Simple_repeat 2 55 0 335 364 61 17 chr15 49423775 49424069 -51956452 + L2 LINE L2 1510 1816 -1498 265 208 151 0 chr15 49424953 49425006 -51955515 + MER91A DNA MER1_type 1 61 -135 187 261 0 92 chr15 49425316 49425381 -51955140 - L2 LINE L2 -20 3293 3235 589 118 0 132 chr15 49425477 49425613 -51954908 + AluJ SINE Alu 16 133 -179 180 111 0 0 chr15 49425613 49425640 -51954881 + (A)n Simple_repeat Simple_repeat 1 27 0 917 184 89 0 chr15 49425641 49425809 -51954712 + AluJ SINE Alu 120 302 -10 186 364 26 13 chr15 49426379 49426456 -51954065 + MIR SINE MIR 11 88 -174 407 255 62 28 chr15 49426478 49426623 -51953898 - MIR SINE MIR 0 262 113 779 264 71 29 chr15 49426705 49426944 -51953577 + MIR SINE MIR 6 254 -8 5097 117 27 1 chr15 49427144 49427951 -51952570 + L1MA5A LINE L1 5468 6295 -2 1164 127 17 89 chr15 49428674 49428910 -51951611 - MER20 DNA MER1_type 0 219 1 197 203 0 94 chr15 49429261 49429325 -51951196 + L3 LINE CR1 1040 1097 -480 2753 97 17 52 chr15 49430033 49430509 -51950012 - L1PA8A LINE L1 -1 6130 5672 229 326 122 39 chr15 49430567 49430748 -51949773 - L2 LINE L2 -2 3270 3075 23 54 0 0 chr15 49430792 49430829 -51949692 + AT_rich Low_complexity Low_complexity 1 37 0 1820 183 0 3 chr15 49430829 49431119 -51949402 - AluJo SINE Alu -23 289 1 205 192 56 176 chr15 49433875 49434000 -51946521 - MIR SINE MIR 0 262 153 457 279 36 7 chr15 49434051 49434191 -51946330 + MIR SINE MIR 49 192 -70 234 199 133 73 chr15 49434712 49434863 -51945658 - L1ME4a LINE L1 -1 6120 5961 348 24 0 0 chr15 49434863 49434904 -51945617 + (CA)n Simple_repeat Simple_repeat 1 41 0 802 72 0 0 chr15 49434936 49435047 -51945474 - L1PA13 LINE L1 -1 6162 6052 454 224 80 35 chr15 49435055 49435229 -51945292 - MLT1B LTR MaLR -30 525 330 940 115 19 6 chr15 49435338 49435495 -51945026 - L1PA12 LINE L1 -118 6050 5892 778 267 93 68 chr15 49435542 49436025 -51944496 - MLT1H1 LTR MaLR 0 555 61 1298 167 49 4 chr15 49436058 49436303 -51944218 - MLT1D LTR MaLR 0 505 250 255 235 111 0 chr15 49436356 49436437 -51944084 - MLT1D LTR MaLR -505 90 1 228 333 156 22 chr15 49436543 49436774 -51943747 - L1ME LINE L1 -374 5747 5486 6305 190 47 22 chr15 49436821 49439331 -51941190 - L1MA9 LINE L1 0 6312 3734 319 281 122 7 chr15 49439348 49439487 -51941034 - L1ME LINE L1 -701 5420 5266 955 287 47 32 chr15 49440619 49440999 -51939522 - L2 LINE L2 -18 3295 2910 260 206 0 79 chr15 49441939 49442002 -51938519 + L2 LINE L2 3214 3271 -1 197 262 71 48 chr15 49442167 49442251 -51938270 + MIR SINE MIR 8 93 -169 378 206 29 66 chr15 49442589 49442725 -51937796 + MLT1H LTR MaLR 401 531 -18 1470 209 43 29 chr15 49443494 49443868 -51936653 - MLT1B LTR MaLR -11 379 1 428 309 50 0 chr15 49444476 49444615 -51935906 + L2 LINE L2 3126 3271 -1 211 370 40 0 chr15 49444882 49444982 -51935539 + MIR SINE MIR 20 123 -139 255 268 98 32 chr15 49447353 49447476 -51933045 + MIR SINE MIR 84 214 -48 1397 53 5 7 chr15 49447486 49447737 -51932784 + (TTTC)n Simple_repeat Simple_repeat 1 428 0 891 157 182 0 chr15 49450054 49450213 -51930308 + MER5A DNA MER1_type 1 188 -1 250 167 0 0 chr15 49450860 49450902 -51929619 + MIR SINE MIR 162 203 -59 2241 135 30 30 chr15 49453072 49453436 -51927085 - THE1B LTR MaLR 0 364 1 1055 147 45 0 chr15 49455844 49456021 -51924500 - L1PB1 LINE L1 -8 6143 5959 315 149 257 0 chr15 49457378 49457452 -51923069 - MIR SINE MIR -62 146 54 1647 185 7 26 chr15 49457728 49458036 -51922485 + AluJo SINE Alu 1 302 -10 661 239 57 6 chr15 49458243 49458402 -51922119 + L2 LINE L2 2651 2817 -497 774 284 166 15 chr15 49458413 49458613 -51921908 + L2 LINE L2 2933 3101 -212 549 80 0 0 chr15 49458613 49458688 -51921833 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 774 284 166 15 chr15 49458688 49458818 -51921703 + L2 LINE L2 3101 3313 0 2647 142 42 2 chr15 49458868 49459276 -51921245 - MSTB LTR MaLR -2 424 1 711 287 24 36 chr15 49463904 49464155 -51916366 - MIR SINE MIR -3 259 12 1377 66 0 39 chr15 49464288 49464470 -51916051 + AluY SINE Alu 107 281 -30 397 0 19 19 chr15 49464473 49464527 -51915994 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 692 229 70 48 chr15 49464536 49464763 -51915758 + MIR SINE MIR 31 262 0 587 201 215 0 chr15 49464939 49465083 -51915438 + MER5B DNA MER1_type 3 177 -1 210 217 65 0 chr15 49465391 49465437 -51915084 + MIR SINE MIR 105 153 -109 3417 61 5 0 chr15 49465878 49466285 -51914236 + L1PA8 LINE L1 5764 6172 0 264 59 0 0 chr15 49466382 49466416 -51914105 + (TC)n Simple_repeat Simple_repeat 2 35 0 650 290 37 20 chr15 49466761 49467006 -51913515 - MER102b DNA MER1_type -6 335 87 213 286 0 0 chr15 49468344 49468400 -51912121 + L3 LINE CR1 1520 1575 -2 603 232 8 0 chr15 49468501 49468626 -51911895 - L2 LINE L2 0 3313 3188 232 243 15 22 chr15 49469223 49469359 -51911162 + CT-rich Low_complexity Low_complexity 1 135 0 303 146 0 0 chr15 49469689 49469744 -51910777 + (CAA)n Simple_repeat Simple_repeat 3 57 0 210 242 48 16 chr15 49470228 49470290 -51910231 - MIR SINE MIR -4 258 195 25 0 0 0 chr15 49470295 49470320 -51910201 + AT_rich Low_complexity Low_complexity 1 25 0 3232 30 0 3 chr15 49470320 49470681 -51909840 - L1PA3 LINE L1 0 6155 5796 199 343 57 71 chr15 49470817 49471027 -51909494 + L2 LINE L2 2555 2761 -553 188 338 65 0 chr15 49471708 49471785 -51908736 + MIR3 SINE MIR 113 194 -14 267 307 40 60 chr15 49471831 49471981 -51908540 - L2 LINE L2 0 3272 3126 302 294 287 0 chr15 49472077 49472213 -51908308 + MER5A DNA MER1_type 8 182 -7 436 254 136 0 chr15 49472223 49472333 -51908188 - MIR3 SINE MIR -52 156 32 252 0 0 0 chr15 49472977 49473005 -51907516 + (T)n Simple_repeat Simple_repeat 1 28 0 184 339 15 0 chr15 49473618 49473683 -51906838 - L2 LINE L2 -13 3259 3194 5891 134 23 33 chr15 49473837 49474876 -51905645 + L1MA4 LINE L1 5269 6297 -3 3030 159 26 25 chr15 49474881 49475448 -51905073 + L1MB7 LINE L1 5598 6165 -19 430 284 40 103 chr15 49475875 49476252 -51904269 + MLT1I LTR MaLR 47 399 -10 296 355 32 16 chr15 49477044 49477168 -51903353 - MIR SINE MIR -109 153 28 670 275 77 67 chr15 49477638 49477799 -51902722 - L2 LINE L2 -1 3312 3154 2645 164 32 32 chr15 49477799 49478304 -51902217 + MLT1D LTR MaLR 1 505 0 670 275 77 67 chr15 49478304 49478546 -51901975 - L2 LINE L2 -159 3154 2905 309 109 0 0 chr15 49478599 49478645 -51901876 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 408 276 0 0 chr15 49478663 49478750 -51901771 - L2 LINE L2 0 3313 3227 2039 120 23 23 chr15 49478831 49479140 -51901381 - AluSg SINE Alu -1 309 1 182 275 0 0 chr15 49480581 49480621 -51899900 + L2 LINE L2 3226 3265 -7 213 277 46 0 chr15 49481821 49481886 -51898635 - MIR3 SINE MIR -2 206 139 308 354 62 0 chr15 49481960 49482056 -51898465 + L2 LINE L2 3147 3248 -24 348 335 80 25 chr15 49482082 49482282 -51898239 - MIR SINE MIR -31 231 21 1530 160 38 0 chr15 49483362 49483625 -51896896 + AluSx SINE Alu 3 275 -37 214 167 0 0 chr15 49485117 49485153 -51895368 + (CA)n Simple_repeat Simple_repeat 1 36 0 427 268 41 8 chr15 49486554 49486677 -51893844 + MIR SINE MIR 82 208 -54 214 330 110 8 chr15 49486769 49486887 -51893634 - MIR SINE MIR -5 257 128 344 286 57 21 chr15 49488144 49488284 -51892237 + MIR SINE MIR 118 262 0 292 271 35 0 chr15 49488292 49488377 -51892144 + MIR SINE MIR 167 254 -8 1162 282 79 13 chr15 49489367 49489821 -51890700 + LTR16C LTR ERVL 1 484 -7 186 43 0 0 chr15 49489850 49489873 -51890648 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 224 315 14 0 chr15 49489981 49490054 -51890467 + L2 LINE L2 3235 3308 -5 341 294 14 56 chr15 49490095 49490255 -51890266 + MIR3 SINE MIR 28 181 -27 216 216 0 0 chr15 49491193 49491244 -51889277 + CT-rich Low_complexity Low_complexity 3 53 0 288 0 0 0 chr15 49493843 49493875 -51886646 + (TG)n Simple_repeat Simple_repeat 2 33 0 946 234 113 0 chr15 49494402 49494633 -51885888 - MIR SINE MIR 0 262 6 203 183 33 17 chr15 49494964 49495024 -51885497 + A-rich Low_complexity Low_complexity 5 65 0 28 29 0 0 chr15 49495925 49495960 -51884561 + AT_rich Low_complexity Low_complexity 1 35 0 1395 171 8 0 chr15 49495966 49496205 -51884316 - L1MA6 LINE L1 -4 6296 6056 2630 144 44 22 chr15 49496205 49496695 -51883826 - L1 LINE L1 -897 5249 4746 204 40 0 0 chr15 49496695 49496720 -51883801 + (TG)n Simple_repeat Simple_repeat 2 26 0 580 171 23 6 chr15 49496730 49496905 -51883616 + (TA)n Simple_repeat Simple_repeat 2 179 0 1752 171 0 27 chr15 49496908 49497206 -51883315 - AluJb SINE Alu -22 290 1 1830 122 0 0 chr15 49497206 49497477 -51883044 - L1 LINE L1 -1399 4747 4477 722 213 41 35 chr15 49497483 49497680 -51882841 + L1M4 LINE L1 3633 3830 -2316 * 20247 165 17 4 chr15 49497679 49498204 -51882317 - L1PA13 LINE L1 0 6814 6297 2056 165 44 14 chr15 49498204 49498568 -51881953 + THE1C LTR MaLR 1 375 0 20247 165 17 4 chr15 49498568 49503025 -51877496 - L1PA13 LINE L1 -517 6297 1768 338 188 14 0 chr15 49503070 49503139 -51877382 + L1M2 LINE L1 5432 5501 -799 824 151 70 0 chr15 49503151 49503350 -51877171 - L1 LINE L1 -2982 3164 2952 216 0 0 0 chr15 49503765 49503789 -51876732 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 420 360 81 9 chr15 49504340 49504562 -51875959 + MIR SINE MIR 17 254 -8 1294 251 55 49 chr15 49505164 49505635 -51874886 + LTR33 LTR ERVL 1 474 -47 22 0 0 0 chr15 49506245 49506267 -51874254 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr15 49506377 49506419 -51874102 + AT_rich Low_complexity Low_complexity 1 42 0 6282 91 9 3 chr15 49506428 49508134 -51872387 + L1PA13 LINE L1 4459 6161 -2 585 258 122 14 chr15 49508313 49508526 -51871995 - MIR SINE MIR -10 252 17 2379 109 0 0 chr15 49510081 49510442 -51870079 - AluY SINE Alu 0 361 1 412 313 94 78 chr15 49510695 49511203 -51869318 + L2 LINE L2 2543 3073 -199 578 261 4 41 chr15 49512271 49512516 -51868005 - L1ME LINE L1 -303 5818 5583 231 146 0 0 chr15 49513800 49513841 -51866680 + (TTTTC)n Simple_repeat Simple_repeat 3 43 0 324 324 183 29 chr15 49514450 49515067 -51865454 + L2 LINE L2 1912 2623 -691 1555 222 57 26 chr15 49515906 49516361 -51864160 - Charlie4a DNA MER1_type -19 489 21 449 286 15 0 chr15 49516489 49516622 -51863899 - MLT1J LTR MaLR -316 195 61 2111 112 20 13 chr15 49516623 49516927 -51863594 + AluSq SINE Alu 1 306 -7 21 0 0 0 chr15 49517230 49517251 -51863270 + AT_rich Low_complexity Low_complexity 1 21 0 904 252 109 28 chr15 49517260 49517473 -51863048 - L2 LINE L2 0 3313 3064 2037 201 59 97 chr15 49517473 49518153 -51862368 + MLT1E1 LTR MaLR 1 654 0 904 252 109 28 chr15 49518153 49518261 -51862260 - L2 LINE L2 -249 3064 2966 1039 265 135 17 chr15 49518269 49518737 -51861784 - L2 LINE L2 -618 2696 2174 2708 90 0 0 chr15 49518815 49519170 -51861351 - THE1A LTR MaLR 0 355 1 10694 94 6 8 chr15 49519183 49520739 -51859782 - THE1A-int LTR MaLR -27 1553 1 2634 101 0 3 chr15 49520739 49521095 -51859426 - THE1A LTR MaLR 0 355 1 269 204 23 114 chr15 49521095 49521183 -51859338 - MIR SINE MIR -95 113 34 1392 201 19 29 chr15 49522223 49522531 -51857990 - AluJo SINE Alu -7 305 1 281 260 135 19 chr15 49523303 49523407 -51857114 + L2 LINE L2 3153 3268 -4 206 380 10 10 chr15 49523496 49523596 -51856925 - L2 LINE L2 0 3272 3173 412 244 75 12 chr15 49523643 49523803 -51856718 - L1MC/D LINE L1 -1999 5809 5640 190 194 90 30 chr15 49524014 49524081 -51856440 + MER5C DNA MER1_type 9 79 -245 9308 207 64 15 chr15 49524515 49526317 -51854204 - L1PA16 LINE L1 -5 6864 5151 2061 123 3 3 chr15 49526317 49526617 -51853904 + AluSx SINE Alu 5 304 -8 9308 207 64 15 chr15 49526617 49528368 -51852153 - L1PA16 LINE L1 -1718 5151 3139 2939 165 13 6 chr15 49528370 49528897 -51851624 - L1PA16 LINE L1 -6318 531 1 289 333 83 30 chr15 49529196 49529328 -51851193 - L2 LINE L2 -1 3271 3133 2143 265 139 35 chr15 49529797 49530246 -51850275 + L1ME3A LINE L1 2814 3215 -2955 261 98 0 0 chr15 49530246 49530287 -51850234 + (CA)n Simple_repeat Simple_repeat 2 42 0 2143 265 139 35 chr15 49530287 49531299 -51849222 + L1ME3A LINE L1 3215 4120 -2050 2610 99 6 0 chr15 49531299 49531652 -51848869 + THE1A LTR MaLR 1 355 0 2143 265 139 35 chr15 49531652 49533037 -51847484 + L1ME3A LINE L1 4120 5962 -208 2024 156 55 31 chr15 49533191 49533732 -51846789 - MLT2A2 LTR ERVL 0 554 1 6554 125 8 15 chr15 49533772 49535076 -51845445 - L1MA2 LINE L1 0 7723 6427 2824 115 34 13 chr15 49535095 49535676 -51844845 - L1MA2 LINE L1 -3822 3743 3157 448 162 36 27 chr15 49535670 49535781 -51844740 - L1MA2 LINE L1 -7438 127 16 * 273 267 115 51 chr15 49535839 49536135 -51844386 + L1MC4a LINE L1 5592 5906 -1902 401 295 16 16 chr15 49536385 49536507 -51844014 - MIR SINE MIR -94 168 47 303 28 0 0 chr15 49536549 49536585 -51843936 + (GA)n Simple_repeat Simple_repeat 2 37 0 257 298 44 55 chr15 49536997 49537178 -51843343 + L2 LINE L2 2474 2652 -662 352 344 72 77 chr15 49537193 49537556 -51842965 - L2 LINE L2 0 3272 2912 1837 268 95 9 chr15 49537751 49538310 -51842211 + MLT2E LTR ERVL 22 628 0 198 321 18 80 chr15 49538339 49538451 -51842070 + L2 LINE L2 2955 3059 -213 942 205 22 0 chr15 49540426 49540611 -51839910 + MER5A DNA MER1_type 1 189 0 306 291 34 26 chr15 49542102 49542219 -51838302 + MIR3 SINE MIR 81 198 -10 190 387 189 0 chr15 49542932 49543038 -51837483 + L2 LINE L2 3147 3272 0 188 257 0 0 chr15 49543869 49543904 -51836617 - MIR SINE MIR -124 84 50 2140 121 0 10 chr15 49543929 49544234 -51836287 - AluSg SINE Alu -8 302 1 252 0 0 0 chr15 49544241 49544269 -51836252 + (T)n Simple_repeat Simple_repeat 1 28 0 28 0 0 0 chr15 49544952 49544980 -51835541 + AT_rich Low_complexity Low_complexity 1 28 0 301 277 0 12 chr15 49545014 49545097 -51835424 - L1ME LINE L1 -513 5608 5527 224 130 19 37 chr15 49545104 49545158 -51835363 + T-rich Low_complexity Low_complexity 2 54 0 204 225 0 0 chr15 49546321 49546361 -51834160 + A-rich Low_complexity Low_complexity 2 41 0 435 78 0 0 chr15 49547968 49548032 -51832489 + (TTCA)n Simple_repeat Simple_repeat 2 65 0 362 309 34 68 chr15 49548210 49548417 -51832104 + MIR3 SINE MIR 1 200 -8 1087 147 0 0 chr15 49548727 49548890 -51831631 + FRAM SINE Alu 4 166 0 216 351 9 45 chr15 49548953 49549064 -51831457 - L2 LINE L2 -6 3266 3160 248 306 71 12 chr15 49550102 49550284 -51830237 + MIR SINE MIR 44 262 0 5484 172 29 35 chr15 49550319 49550500 -51830021 + L1MA10 LINE L1 4208 4389 -1945 1787 155 36 26 chr15 49550500 49550809 -51829712 + AluJb SINE Alu 1 312 0 5484 172 29 35 chr15 49550809 49552738 -51827783 + L1MA10 LINE L1 4389 6323 -11 1397 189 10 50 chr15 49554184 49554485 -51826036 - AluJb SINE Alu -23 289 1 195 363 159 5 chr15 49554681 49554882 -51825639 + L2 LINE L2 2572 2803 -511 260 203 13 38 chr15 49555385 49555464 -51825057 - L1ME4a LINE L1 -103 6018 5942 239 194 30 0 chr15 49555602 49555669 -51824852 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 5371 232 49 15 chr15 49555769 49558726 -51821795 - L1MB2 LINE L1 -19 6152 3067 355 359 38 23 chr15 49559262 49559393 -51821128 - L2 LINE L2 -18 3254 3122 21713 137 13 5 chr15 49559496 49564280 -51816241 + L1PA10 LINE L1 1998 6831 0 262 198 121 33 chr15 49564489 49564580 -51815941 - L2 LINE L2 -262 3010 2912 188 313 48 72 chr15 49564782 49564865 -51815656 - L2 LINE L2 0 3272 3192 331 287 14 63 chr15 49564943 49565086 -51815435 - L2 LINE L2 -253 3060 2925 494 265 55 31 chr15 49566217 49566447 -51814074 + MIR SINE MIR 16 248 -14 685 310 27 19 chr15 49568525 49568783 -51811738 + MIR SINE MIR 3 262 0 288 257 143 9 chr15 49569192 49569297 -51811224 - MER5A DNA MER1_type -70 119 1 294 223 205 27 chr15 49569308 49569420 -51811101 + MIR SINE MIR 21 152 -110 421 107 0 27 chr15 49570065 49570140 -51810381 - L1PA11 LINE L1 -1 6173 6101 2571 57 0 0 chr15 49570151 49570447 -51810074 - AluY SINE Alu -15 296 1 23 54 0 0 chr15 49570872 49570909 -51809612 + AT_rich Low_complexity Low_complexity 1 37 0 477 170 95 82 chr15 49570937 49571084 -51809437 - MLT1C LTR MaLR -314 153 5 7601 25 2 0 chr15 49571506 49572762 -51807759 + L1PA4 LINE L1 4895 6152 -3 1551 211 102 20 chr15 49573265 49573447 -51807074 + MLT1D LTR MaLR 1 167 -338 342 0 0 0 chr15 49573447 49573485 -51807036 + (CA)n Simple_repeat Simple_repeat 2 39 0 1551 211 102 20 chr15 49573485 49573762 -51806759 + MLT1D LTR MaLR 167 498 -7 674 196 31 141 chr15 49574141 49574467 -51806054 - MLT2B1 LTR ERVL -186 334 45 780 250 32 23 chr15 49574753 49574969 -51805552 - MIR SINE MIR -12 250 33 839 281 56 0 chr15 49575650 49575917 -51804604 + LTR16A LTR ERVL 169 450 0 565 314 122 37 chr15 49575928 49576501 -51804020 - HAL1 LINE L1 -1881 626 5 24 32 0 0 chr15 49580115 49580146 -51800375 + AT_rich Low_complexity Low_complexity 1 31 0 441 298 39 120 chr15 49581063 49581472 -51799049 - L2 LINE L2 0 3272 2897 347 83 0 0 chr15 49582410 49582458 -51798063 + MLT1A1 LTR MaLR 103 150 -215 899 123 0 0 chr15 49582466 49582588 -51797933 + FLAM_C SINE Alu 3 124 -9 405 311 197 6 chr15 49582745 49582928 -51797593 + MIR SINE MIR 42 259 -3 216 67 0 0 chr15 49584303 49584333 -51796188 + (TG)n Simple_repeat Simple_repeat 2 31 0 195 341 98 0 chr15 49585173 49585305 -51795216 + L2 LINE L2 2837 2981 -291 335 320 85 0 chr15 49586702 49586855 -51793666 + MIR3 SINE MIR 33 198 -10 268 346 131 0 chr15 49587119 49587226 -51793295 - L2 LINE L2 -56 3216 3096 247 260 19 15 chr15 49587316 49587421 -51793100 - MIR SINE MIR -71 137 33 630 242 27 7 chr15 49589317 49589466 -51791055 - MIR3 SINE MIR -3 205 54 306 277 71 27 chr15 49589882 49589994 -51790527 + L2 LINE L2 3149 3265 -7 612 227 162 13 chr15 49590032 49590186 -51790335 + MER5A DNA MER1_type 6 182 -7 2125 142 7 0 chr15 49590334 49590644 -51789877 + AluSx SINE Alu 1 312 0 216 0 0 0 chr15 49592192 49592216 -51788305 + (TTA)n Simple_repeat Simple_repeat 2 25 0 384 309 209 0 chr15 49593165 49593366 -51787155 - MIR SINE MIR -5 257 15 9164 219 16 9 chr15 49593505 49593839 -51786682 - L1PA16 LINE L1 -10 6156 5826 2030 131 7 0 chr15 49593839 49594129 -51786392 - AluSx SINE Alu -20 292 1 9164 219 16 9 chr15 49594129 49596932 -51783589 - L1PA16 LINE L1 -340 5826 3031 494 157 10 0 chr15 49596952 49597054 -51783467 + CT-rich Low_complexity Low_complexity 3 105 0 1884 190 0 6 chr15 49597056 49597367 -51783154 - AluSx SINE Alu -3 309 1 3124 249 20 60 chr15 49597371 49598365 -51782156 - L1PA16 LINE L1 -3113 3033 2042 330 113 0 0 chr15 49598365 49598418 -51782103 + Alu SINE Alu 245 297 -5 3124 249 20 60 chr15 49598418 49598594 -51781927 - L1PA16 LINE L1 -4104 2042 1860 708 20 0 30 chr15 49598697 49598798 -51781723 + (TTC)n Simple_repeat Simple_repeat 3 100 0 591 281 55 5 chr15 49598943 49599142 -51781379 + MER3 DNA MER1_type 1 209 0 2774 189 57 37 chr15 49599568 49600680 -51779841 + L1M4 LINE L1 4627 5755 -429 762 237 65 0 chr15 49600758 49600944 -51779577 + MIR SINE MIR 58 255 -7 391 314 83 7 chr15 49600974 49601160 -51779361 + MIR3 SINE MIR 8 206 -2 1412 131 0 0 chr15 49601219 49601410 -51779111 + AluSq SINE Alu 24 214 -99 22 35 0 0 chr15 49601776 49601805 -51778716 + AT_rich Low_complexity Low_complexity 1 29 0 6469 145 21 20 chr15 49602919 49603738 -51776783 - L1MA8 LINE L1 0 6291 5475 1853 157 14 7 chr15 49603738 49604025 -51776496 - AluJo SINE Alu -23 289 1 6469 145 21 20 chr15 49604025 49604135 -51776386 - L1MA8 LINE L1 -816 5475 5367 6040 120 74 62 chr15 49604135 49604925 -51775596 + Tigger3b DNA MER2_type 2 812 -2216 1714 152 6 76 chr15 49604925 49605254 -51775267 + AluSx SINE Alu 5 310 -2 6040 120 74 62 chr15 49605254 49605679 -51774842 + Tigger3b DNA MER2_type 812 1231 0 6469 145 21 20 chr15 49605679 49606982 -51773539 - L1MA8 LINE L1 -924 5367 4045 404 229 0 21 chr15 49607076 49607172 -51773349 - MLT2E LTR ERVL -519 109 16 200 274 0 48 chr15 49607520 49607582 -51772939 + L2 LINE L2 3242 3300 -13 730 165 135 0 chr15 49607585 49607718 -51772803 + FAM SINE Alu 18 168 -17 184 276 10 102 chr15 49608809 49608907 -51771614 - L3 LINE CR1 -590 987 899 628 321 210 32 chr15 49609416 49610036 -51770485 - L3 LINE CR1 -419 1158 429 1868 198 61 2 chr15 49610048 49610473 -51770048 + L1ME2 LINE L1 5609 6058 -106 1130 244 55 37 chr15 49610494 49610876 -51769645 + MLT1B LTR MaLR 2 390 0 307 291 39 47 chr15 49610926 49611053 -51769468 - L1ME2 LINE L1 -132 6032 5907 271 257 80 18 chr15 49611054 49611167 -51769354 + MIR SINE MIR 137 256 -6 2015 134 0 0 chr15 49612279 49612563 -51767958 + AluSq SINE Alu 1 284 -29 293 82 20 0 chr15 49612566 49612615 -51767906 + (CAA)n Simple_repeat Simple_repeat 2 51 0 279 0 0 0 chr15 49613044 49613075 -51767446 + (T)n Simple_repeat Simple_repeat 1 31 0 22 0 0 0 chr15 49613516 49613538 -51766983 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr15 49613802 49613831 -51766690 + AT_rich Low_complexity Low_complexity 1 29 0 480 77 0 0 chr15 49613831 49613896 -51766625 + (TG)n Simple_repeat Simple_repeat 2 66 0 278 304 88 64 chr15 49614014 49614139 -51766382 + MER5A DNA MER1_type 59 186 -3 495 267 176 11 chr15 49614696 49614883 -51765638 + MIR SINE MIR 12 229 -33 1857 123 68 41 chr15 49618860 49619225 -51761296 + THE1C LTR MaLR 1 375 0 531 239 67 81 chr15 49619397 49619606 -51760915 - MIR SINE MIR -10 252 47 365 261 314 11 chr15 49620934 49621122 -51759399 + MIR SINE MIR 13 257 -5 340 250 0 46 chr15 49621459 49621567 -51758954 - MER103 DNA DNA -54 112 10 1594 187 16 29 chr15 49621673 49621989 -51758532 + AluJb SINE Alu 1 312 0 216 0 0 0 chr15 49622018 49622042 -51758479 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 299 364 65 26 chr15 49623670 49623824 -51756697 - L2 LINE L2 -16 3256 3097 374 265 28 81 chr15 49624045 49624256 -51756265 - LTR67 LTR ERVL -2 555 356 1104 202 206 0 chr15 49624682 49624964 -51755557 + MSTD LTR MaLR 5 344 -52 191 167 0 21 chr15 49625343 49625391 -51755130 + CT-rich Low_complexity Low_complexity 2 48 0 979 128 0 27 chr15 49625414 49625739 -51754782 + (TTTC)n Simple_repeat Simple_repeat 1 496 -44 243 0 0 0 chr15 49625739 49625766 -51754755 + (CCTG)n Simple_repeat Simple_repeat 4 30 0 979 128 0 27 chr15 49625766 49625810 -51754711 + (TTTC)n Simple_repeat Simple_repeat 496 540 0 1489 11 0 11 chr15 49625810 49625991 -51754530 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 627 14 0 0 chr15 49625991 49626063 -51754458 + (TTTC)n Simple_repeat Simple_repeat 1 72 0 997 174 18 59 chr15 49626123 49626342 -51754179 + MER20 DNA MER1_type 7 216 -3 320 155 0 0 chr15 49626561 49626619 -51753902 - MER81 DNA DNA 0 114 57 22 70 0 0 chr15 49628027 49628070 -51752451 + AT_rich Low_complexity Low_complexity 1 43 0 290 275 7 94 chr15 49629495 49629633 -51750888 + L2 LINE L2 2921 3046 -226 243 316 11 53 chr15 49632359 49632454 -51748067 - MER5A DNA MER1_type 0 189 99 213 288 89 41 chr15 49632696 49632842 -51747679 - L3b LINE CR1 -9 1574 1422 1033 252 22 14 chr15 49633130 49633408 -51747113 - L3b LINE CR1 -200 1383 1104 842 252 93 5 chr15 49633493 49633707 -51746814 + MIR SINE MIR 1 233 -29 285 349 9 11 chr15 49633889 49634017 -51746504 + MIR SINE MIR 27 151 -66 504 330 63 17 chr15 49634275 49634514 -51746007 + MIR SINE MIR 1 250 -12 366 236 87 72 chr15 49635076 49635284 -51745237 - L1ME4a LINE L1 -11 6110 5900 189 196 0 0 chr15 49635300 49635346 -51745175 + (TA)n Simple_repeat Simple_repeat 1 46 0 256 285 76 6 chr15 49635415 49635573 -51744948 - L1ME4a LINE L1 -313 5808 5640 186 43 0 0 chr15 49636546 49636569 -51743952 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 351 262 63 40 chr15 49638908 49639034 -51741487 + MIR SINE MIR 86 214 -48 739 236 144 31 chr15 49639085 49639314 -51741207 - MIR SINE MIR -3 259 5 359 303 61 57 chr15 49640346 49640574 -51739947 - MIR SINE MIR 0 262 34 279 303 112 3 chr15 49640816 49641005 -51739516 + MIR SINE MIR 3 262 0 198 372 0 26 chr15 49641171 49641249 -51739272 - MIR SINE MIR -116 92 17 371 275 191 6 chr15 49641296 49641474 -51739047 - MIR SINE MIR 0 262 52 385 333 80 22 chr15 49642492 49642768 -51737753 + L3 LINE CR1 1179 1470 -107 240 35 0 0 chr15 49642770 49642799 -51737722 + (GA)n Simple_repeat Simple_repeat 2 30 0 40745 35 21 1 chr15 49643917 49649949 -51730572 - L1PA2 LINE L1 -1 6154 1 1936 133 66 36 chr15 49650029 49650391 -51730130 + THE1C LTR MaLR 3 375 0 217 246 46 15 chr15 49651708 49651773 -51728748 - L2 LINE L2 0 3313 3247 8292 111 9 31 chr15 49651813 49652791 -51727730 - HSMAR1 DNA Mariner -9 1278 335 2046 131 3 3 chr15 49652791 49653089 -51727432 + AluSx SINE Alu 1 298 -14 8292 111 9 31 chr15 49653089 49653416 -51727105 - HSMAR1 DNA Mariner -952 335 2 194 356 130 32 chr15 49653541 49653788 -51726733 - L2 LINE L2 -190 3082 2812 258 266 16 16 chr15 49654065 49654129 -51726392 + L2 LINE L2 3246 3309 -4 890 252 57 0 chr15 49654404 49654614 -51725907 - MIR SINE MIR 0 262 41 231 366 48 43 chr15 49655310 49655496 -51725025 + L3 LINE CR1 1249 1435 -142 304 308 0 0 chr15 49655583 49655661 -51724860 - MIR SINE MIR -183 79 2 1986 259 292 5 chr15 49655997 49657123 -51723398 - L2 LINE L2 -1 3312 1838 207 327 0 0 chr15 49657213 49657265 -51723256 - L2 LINE L2 -12 3301 3250 768 275 64 21 chr15 49657835 49658068 -51722453 - MIR SINE MIR -17 245 3 2077 186 7 24 chr15 49658156 49658551 -51721970 + Tigger1 DNA MER2_type 1 390 -2028 2574 207 14 53 chr15 49658551 49659188 -51721333 + LTR9 LTR ERV1 1 612 0 2077 186 7 24 chr15 49659188 49659211 -51721310 + Tigger1 DNA MER2_type 390 412 -2006 485 306 126 0 chr15 49659272 49659527 -51720994 - L1ME LINE L1 -363 5758 5472 11050 128 59 10 chr15 49659621 49661060 -51719461 + Tigger1 DNA MER2_type 398 1956 -462 7463 32 4 3 chr15 49661060 49662048 -51718473 + L1PA4 LINE L1 5167 6155 0 11050 128 59 10 chr15 49662048 49662527 -51717994 + Tigger1 DNA MER2_type 1956 2410 -8 265 275 11 55 chr15 49662572 49662663 -51717858 - MIR SINE MIR -151 111 25 321 311 51 45 chr15 49662767 49662944 -51717577 + MIR SINE MIR 26 203 -59 269 260 0 3 chr15 49663706 49663773 -51716748 + MIR SINE MIR 78 141 -67 332 281 88 0 chr15 49663786 49663900 -51716621 - MIR SINE MIR -2 260 137 7658 11 0 0 chr15 49664323 49665674 -51714847 - L1HS LINE L1 0 6155 4805 532 283 33 28 chr15 49665893 49666073 -51714448 - MIR SINE MIR 0 262 82 426 229 0 0 chr15 49666758 49666880 -51713641 + GA-rich Low_complexity Low_complexity 3 124 0 404 228 61 18 chr15 49666895 49667009 -51713512 - MIR SINE MIR -52 210 92 237 313 0 0 chr15 49667076 49667143 -51713378 + L2 LINE L2 3246 3312 -1 408 289 146 39 chr15 49667276 49667632 -51712889 + MLT1J2 LTR MaLR 55 448 -2 2037 148 48 0 chr15 49669257 49669588 -51710933 + MER7A DNA MER2_type 1 345 -1 657 271 5 21 chr15 49670844 49671032 -51709489 - MIR SINE MIR 0 262 78 209 325 0 25 chr15 49671074 49671154 -51709367 + CT-rich Low_complexity Low_complexity 2 79 0 181 309 0 15 chr15 49671154 49671222 -51709299 - L2 LINE L2 -20 3252 3186 266 321 30 15 chr15 49672065 49672236 -51708285 - MIR SINE MIR -38 224 52 253 372 146 0 chr15 49672377 49672576 -51707945 - L2 LINE L2 -537 2777 2550 420 321 0 0 chr15 49672986 49673092 -51707429 + L2 LINE L2 3208 3313 0 28 29 0 0 chr15 49674048 49674083 -51706438 + AT_rich Low_complexity Low_complexity 1 35 0 213 205 0 0 chr15 49674110 49674149 -51706372 + A-rich Low_complexity Low_complexity 5 43 0 320 276 222 11 chr15 49674455 49674640 -51705881 - MIR SINE MIR -19 243 20 957 39 77 23 chr15 49676028 49676158 -51704363 + MER85 DNA T2_type 1 137 -2 264 250 135 0 chr15 49677038 49677142 -51703379 - L1M3 LINE L1 -673 5498 5381 400 297 126 48 chr15 49677379 49679615 -51700906 - L1M3 LINE L1 -1088 5058 2998 2421 92 0 3 chr15 49679615 49679929 -51700592 - AluSq SINE Alu 0 313 1 400 297 126 48 chr15 49679929 49680096 -51700425 - L1M3 LINE L1 -3148 2998 2845 2037 167 0 34 chr15 49680096 49680474 -51700047 + MLT1A1 LTR MaLR 1 365 0 400 297 126 48 chr15 49680474 49680701 -51699820 - L1M3 LINE L1 -3301 2845 2221 22 0 0 0 chr15 49681571 49681593 -51698928 + AT_rich Low_complexity Low_complexity 1 22 0 272 259 224 12 chr15 49681638 49681723 -51698798 + MIR3 SINE MIR 15 117 -91 346 211 126 0 chr15 49681810 49681905 -51698616 - MER103 DNA DNA -57 109 3 492 297 141 7 chr15 49683326 49683616 -51696905 - LTR16A LTR ERVL -3 447 119 317 261 40 102 chr15 49683688 49683864 -51696657 + MIR SINE MIR 97 261 -1 292 267 44 11 chr15 49685075 49685165 -51695356 - MIR SINE MIR -86 176 84 537 358 58 9 chr15 49685264 49685490 -51695031 - MIR SINE MIR -10 252 16 240 299 13 0 chr15 49685575 49685652 -51694869 + MLT1L LTR MaLR 122 199 -416 200 176 0 0 chr15 49686597 49686631 -51693890 + GA-rich Low_complexity Low_complexity 1 34 0 2261 181 50 37 chr15 49686689 49687263 -51693258 - L1MD3 LINE L1 -10 7985 7404 611 202 8 0 chr15 49687263 49687387 -51693134 - MLT1F1 LTR MaLR -442 125 1 244 73 109 36 chr15 49687388 49687443 -51693078 - L1MD3 LINE L1 -718 7277 7219 498 258 116 5 chr15 49687500 49687690 -51692831 + LTR33 LTR ERVL 1 211 -310 3937 117 15 28 chr15 49687742 49688559 -51691962 + L1PA13 LINE L1 4883 5832 -331 2169 125 7 0 chr15 49688559 49688856 -51691665 + AluSx SINE Alu 1 299 -13 3937 117 15 28 chr15 49688856 49689182 -51691339 + L1PA13 LINE L1 5832 6161 -2 378 203 80 68 chr15 49689241 49689404 -51691117 + LTR33 LTR ERVL 357 521 0 22 0 0 0 chr15 49689441 49689463 -51691058 + AT_rich Low_complexity Low_complexity 1 22 0 40 0 0 0 chr15 49689574 49689614 -51690907 + AT_rich Low_complexity Low_complexity 1 40 0 1023 134 0 5 chr15 49689616 49689802 -51690719 - L1MA8 LINE L1 -6 6285 6101 2235 125 0 0 chr15 49689812 49690117 -51690404 - AluSx SINE Alu -7 305 1 359 355 0 0 chr15 49690213 49690323 -51690198 - MIR SINE MIR -113 149 40 244 282 10 19 chr15 49690622 49690725 -51689796 - MER103 DNA DNA -52 114 13 21 36 0 0 chr15 49690787 49690815 -51689706 + AT_rich Low_complexity Low_complexity 1 28 0 359 118 0 0 chr15 49691483 49691534 -51688987 + THE1B LTR MaLR 314 364 0 365 195 23 0 chr15 49691543 49691630 -51688891 + MER20 DNA MER1_type 130 218 -1 38607 53 30 1 chr15 49691724 49697673 -51682848 + L1PA5 LINE L1 11 6139 -15 264 30 0 0 chr15 49697673 49697706 -51682815 + (TA)n Simple_repeat Simple_repeat 2 34 0 210 143 0 0 chr15 49698533 49698568 -51681953 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 231 381 30 30 chr15 49699897 49700031 -51680490 + MIR3 SINE MIR 7 140 -68 2391 109 0 0 chr15 49700446 49700758 -51679763 + AluSx SINE Alu 1 312 0 1262 216 111 33 chr15 49700996 49701210 -51679311 - MSTD LTR MaLR -6 390 135 2442 57 3 0 chr15 49701210 49701507 -51679014 - AluY SINE Alu -13 298 1 1262 216 111 33 chr15 49701507 49701654 -51678867 - MSTD LTR MaLR -261 135 1 21 82 0 0 chr15 49702014 49702063 -51678458 + AT_rich Low_complexity Low_complexity 1 49 0 438 20 0 0 chr15 49703280 49703331 -51677190 + (CA)n Simple_repeat Simple_repeat 2 52 0 24 0 0 0 chr15 49705795 49705819 -51674702 + AT_rich Low_complexity Low_complexity 1 24 0 418 342 13 20 chr15 49706452 49706601 -51673920 + MIR3 SINE MIR 19 166 -42 1956 116 53 0 chr15 49709142 49709427 -51671094 + AluSx SINE Alu 1 300 -12 200 339 31 32 chr15 49709567 49709718 -51670803 - MIR SINE MIR -18 190 37 625 251 39 17 chr15 49710518 49710697 -51669824 + MIR SINE MIR 66 248 -14 185 180 20 0 chr15 49710816 49710866 -51669655 + GA-rich Low_complexity Low_complexity 2 52 0 198 278 69 28 chr15 49712520 49712592 -51667929 - L2 LINE L2 -50 3222 3148 195 129 0 0 chr15 49712894 49712925 -51667596 + L2 LINE L2 3276 3306 -7 344 260 159 18 chr15 49713573 49713750 -51666771 + MIR SINE MIR 34 225 -37 201 119 51 34 chr15 49713924 49713945 -51666576 + T-rich Low_complexity Low_complexity 6 25 -40 3572 75 9 45 chr15 49713945 49714481 -51666040 - L1PA8 LINE L1 -8 6164 5648 201 119 51 34 chr15 49714481 49714518 -51666003 + T-rich Low_complexity Low_complexity 25 65 0 272 226 157 0 chr15 49714523 49714625 -51665896 + MLT1C LTR MaLR 1 118 -349 1703 207 66 5 chr15 49714650 49715075 -51665446 - MLT1C LTR MaLR 0 467 17 949 67 28 28 chr15 49718501 49718681 -51661840 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 311 285 80 46 chr15 49720117 49720268 -51660253 + MIR3 SINE MIR 36 191 -17 737 268 16 5 chr15 49720375 49720565 -51659956 - MIR SINE MIR -42 220 29 217 246 18 18 chr15 49720614 49720671 -51659850 + (CA)n Simple_repeat Simple_repeat 2 58 0 370 264 86 22 chr15 49722391 49722517 -51658004 + L1M4 LINE L1 4883 5000 -1194 288 53 0 0 chr15 49722517 49722555 -51657966 + (CA)n Simple_repeat Simple_repeat 1 38 0 370 264 86 22 chr15 49722555 49722933 -51657588 + L1M4 LINE L1 5000 5426 -768 188 186 17 0 chr15 49723007 49723066 -51657455 + (TA)n Simple_repeat Simple_repeat 1 60 0 419 228 60 11 chr15 49723069 49723214 -51657307 - L1MC4 LINE L1 -232 7763 7521 771 256 82 41 chr15 49723237 49723651 -51656870 - L1MC4a LINE L1 -1736 6072 5642 330 242 63 0 chr15 49725178 49725273 -51655248 + MIR SINE MIR 119 219 -43 426 286 31 52 chr15 49726282 49726474 -51654047 + MIR SINE MIR 8 195 -67 758 261 33 53 chr15 49726532 49726835 -51653686 - LTR16A1 LTR ERVL -3 454 158 546 309 68 62 chr15 49726965 49727334 -51653187 - L2 LINE L2 -64 3208 2838 216 218 0 36 chr15 49727497 49727552 -51652969 + (CTA)n Simple_repeat Simple_repeat 1 53 0 198 329 47 35 chr15 49727577 49727662 -51652859 + L2 LINE L2 3111 3196 -76 319 240 154 10 chr15 49727822 49727926 -51652595 - L2 LINE L2 -4 3268 3150 939 275 36 7 chr15 49727931 49728240 -51652281 + MER20B DNA MER1_type 4 321 -462 2596 184 19 4 chr15 49728306 49728833 -51651688 - L1MB2 LINE L1 -42 6129 5595 1296 227 42 26 chr15 49728862 49729290 -51651231 + MER20B DNA MER1_type 340 774 -9 2556 57 0 0 chr15 49729448 49729749 -51650772 + AluY SINE Alu 1 301 -10 1619 207 25 15 chr15 49729915 49730320 -51650201 + MER20B DNA MER1_type 373 781 -2 950 253 37 30 chr15 49730717 49731013 -51649508 - L2 LINE L2 0 3313 3016 2082 104 38 0 chr15 49731289 49731577 -51648944 + AluSx SINE Alu 1 299 -13 294 320 47 31 chr15 49732151 49732279 -51648242 + MIR SINE MIR 22 151 -111 190 288 75 38 chr15 49732346 49732426 -51648095 + L2 LINE L2 3182 3264 -8 225 0 0 0 chr15 49732838 49732863 -51647658 + (TG)n Simple_repeat Simple_repeat 2 26 0 250 239 15 15 chr15 49733231 49733298 -51647223 + (TA)n Simple_repeat Simple_repeat 2 68 0 2878 3 0 0 chr15 49733584 49733895 -51646626 + AluY SINE Alu 1 311 0 194 0 39 0 chr15 49735044 49735070 -51645451 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 326 296 70 0 chr15 49735221 49735336 -51645185 + MIR SINE MIR 90 212 -50 230 268 42 0 chr15 49735803 49735874 -51644647 - L2 LINE L2 -193 3079 3006 351 262 63 40 chr15 49737834 49737960 -51642561 + MIR SINE MIR 86 214 -48 739 236 144 31 chr15 49738011 49738240 -51642281 - MIR SINE MIR -3 259 5 359 303 61 57 chr15 49739272 49739500 -51641021 - MIR SINE MIR 0 262 34 279 303 112 3 chr15 49739742 49739931 -51640590 + MIR SINE MIR 3 262 0 198 372 0 26 chr15 49740097 49740175 -51640346 - MIR SINE MIR -116 92 17 371 275 191 6 chr15 49740222 49740400 -51640121 - MIR SINE MIR 0 262 52 384 336 54 36 chr15 49741414 49741694 -51638827 + L3 LINE CR1 1186 1470 -107 240 35 0 0 chr15 49741696 49741725 -51638796 + (GA)n Simple_repeat Simple_repeat 2 30 0 39615 43 27 0 chr15 49742844 49748823 -51631698 - L1PA2 LINE L1 0 6155 11 365 195 23 0 chr15 49748917 49749004 -51631517 - MER20 DNA MER1_type -1 218 130 359 118 0 0 chr15 49749013 49749064 -51631457 - THE1B LTR MaLR 0 364 314 21 36 0 0 chr15 49749732 49749760 -51630761 + AT_rich Low_complexity Low_complexity 1 28 0 2922 210 112 38 chr15 49750206 49751196 -51629325 + Charlie1 DNA MER1_type 14 1076 -1685 1078 257 83 6 chr15 49751238 49751577 -51628944 + Charlie1 DNA MER1_type 1228 1592 -1169 2481 74 0 3 chr15 49752316 49752628 -51627893 + AluY SINE Alu 1 311 0 1186 199 9 38 chr15 49752628 49752945 -51627576 + Charlie1 DNA MER1_type 1583 1890 -871 304 218 55 55 chr15 49753524 49753634 -51626887 + L1M4 LINE L1 3084 3193 -2953 254 364 0 0 chr15 49753690 49753866 -51626655 + A-rich Low_complexity Low_complexity 1 176 0 304 209 114 85 chr15 49753880 49754081 -51626440 + L1M4 LINE L1 3074 3280 -2866 604 175 79 8 chr15 49754108 49754234 -51626287 + Charlie1 DNA MER1_type 1923 2057 -704 272 279 108 0 chr15 49754249 49754299 -51626222 - L1ME1 LINE L1 -22 6144 6101 198 0 0 0 chr15 49754299 49754321 -51626200 + (TA)n Simple_repeat Simple_repeat 1 22 0 272 279 108 0 chr15 49754321 49754381 -51626140 - L1ME1 LINE L1 -65 6101 6022 27 0 0 0 chr15 49754383 49754410 -51626111 + AT_rich Low_complexity Low_complexity 1 27 0 2104 174 12 2 chr15 49754418 49754820 -51625701 + L1MA7 LINE L1 5458 5863 -428 612 251 18 6 chr15 49754820 49754983 -51625538 - L1ME1 LINE L1 -148 6018 5854 2421 193 98 12 chr15 49754986 49755648 -51624873 + Charlie1 DNA MER1_type 2043 2761 0 321 26 0 0 chr15 49757515 49757553 -51622968 + (TG)n Simple_repeat Simple_repeat 2 39 0 645 230 19 8 chr15 49758084 49758292 -51622229 - L1MC3 LINE L1 -1 7784 6117 303 325 157 15 chr15 49758769 49759043 -51621478 + HAL1 LINE L1 878 1190 -1317 294 331 6 18 chr15 49759046 49759225 -51621296 + L1PA15 LINE L1 5935 6111 -50 207 204 45 0 chr15 49759830 49759874 -51620647 + L3 LINE CR1 1275 1320 -257 645 291 87 30 chr15 49760090 49760389 -51620132 - L2 LINE L2 -1 3312 2997 22 0 0 0 chr15 49760716 49760738 -51619783 + AT_rich Low_complexity Low_complexity 1 22 0 588 294 66 5 chr15 49761536 49761747 -51618774 - MIR SINE MIR -6 256 33 2190 194 71 12 chr15 49762730 49762772 -51617749 - MLT2B1 LTR ERVL 0 520 482 456 35 0 0 chr15 49762772 49762830 -51617691 + (CA)n Simple_repeat Simple_repeat 2 59 0 2190 194 71 12 chr15 49762830 49763278 -51617243 - MLT2B1 LTR ERVL -38 482 1 267 259 25 12 chr15 49763289 49763370 -51617151 + HsTC2 DNA Tc2 1311 1392 -506 235 268 12 12 chr15 49764910 49764992 -51615529 + (TA)n Simple_repeat Simple_repeat 2 83 0 2429 84 0 3 chr15 49765607 49765916 -51614605 + AluY SINE Alu 1 308 -3 5154 132 13 50 chr15 49766475 49767416 -51613105 - L1MC1 LINE L1 0 6333 5428 2180 138 28 25 chr15 49767788 49768151 -51612370 + THE1B LTR MaLR 1 364 0 333 0 0 0 chr15 49768288 49768325 -51612196 + (CA)n Simple_repeat Simple_repeat 1 37 0 328 278 63 31 chr15 49768342 49768509 -51612012 + MIR SINE MIR 36 206 -56 346 326 16 49 chr15 49768515 49768699 -51611822 + MER5B DNA MER1_type 1 178 0 2466 68 0 13 chr15 49770559 49770869 -51609652 - AluY SINE Alu -5 306 1 30 0 0 0 chr15 49771282 49771312 -51609209 + AT_rich Low_complexity Low_complexity 1 30 0 240 354 0 0 chr15 49771370 49771449 -51609072 - MER91 DNA MER1_type -62 128 50 421 313 27 38 chr15 49771558 49771743 -51608778 + MIR SINE MIR 38 218 -44 1985 135 0 26 chr15 49771815 49772119 -51608402 + AluSx SINE Alu 1 296 -16 189 0 0 0 chr15 49772119 49772140 -51608381 + (TA)n Simple_repeat Simple_repeat 1 21 0 2239 115 0 7 chr15 49772168 49772472 -51608049 + AluSq SINE Alu 1 302 -11 340 333 80 6 chr15 49773302 49773464 -51607057 + MIR SINE MIR 77 250 -12 396 323 0 8 chr15 49773479 49773603 -51606918 + MIR SINE MIR 20 142 -66 191 382 13 13 chr15 49775134 49775210 -51605311 - L2 LINE L2 -96 3176 3101 228 61 20 41 chr15 49776021 49776070 -51604451 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 747 264 6 0 chr15 49776499 49776673 -51603848 + MER45A DNA AcHobo 3 177 -1 705 318 29 16 chr15 49777338 49777583 -51602938 + MIR SINE MIR 14 261 -1 405 0 0 0 chr15 49777596 49777641 -51602880 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 449 244 57 88 chr15 49778485 49778678 -51601843 + MIR SINE MIR 76 262 0 333 289 101 19 chr15 49778943 49779102 -51601419 + MIR SINE MIR 36 207 -55 306 313 102 17 chr15 49779102 49779278 -51601243 - MIR SINE MIR -22 240 50 226 314 59 0 chr15 49780626 49780728 -51599793 - MER96 DNA MER1_type? 0 175 68 375 345 68 29 chr15 49781231 49781437 -51599084 + MIR SINE MIR 46 259 -3 388 231 29 0 chr15 49784766 49784870 -51595651 - MER103 DNA DNA -57 109 3 653 301 69 0 chr15 49785221 49785437 -51595084 - MIR SINE MIR -30 232 2 515 345 46 6 chr15 49785736 49785910 -51594611 + MIR3 SINE MIR 3 183 -25 2059 252 89 41 chr15 49786063 49786797 -51593724 - MER21B LTR ERV1 -51 812 44 273 294 98 33 chr15 49787016 49787108 -51593413 + L2 LINE L2 3144 3241 -31 1291 269 158 8 chr15 49788807 49789461 -51591060 + L2 LINE L2 2559 3313 0 1937 163 31 0 chr15 49789498 49789853 -51590668 + MER47A DNA MER2_type 1 366 0 2564 160 5 5 chr15 49789853 49790297 -51590224 - MLT1C LTR MaLR -2 465 22 1980 161 3 176 chr15 49790296 49790910 -51589611 - MLT2B3 LTR ERVL -7 508 1 * 225 215 46 62 chr15 49791697 49791762 -51588759 + L2 LINE L2 3249 3312 -1 3149 262 93 27 chr15 49792098 49792266 -51588255 - L1MCc LINE L1 -4080 3042 2886 189 0 0 0 chr15 49792266 49792287 -51588234 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 3149 262 93 27 chr15 49792287 49793623 -51586898 - L1MCc LINE L1 -4236 2886 1639 231 36 0 0 chr15 49793623 49793651 -51586870 + (TG)n Simple_repeat Simple_repeat 2 29 0 3149 262 93 27 chr15 49793651 49794788 -51585733 - L1MCc LINE L1 -5483 1639 17 231 269 19 0 chr15 49794854 49794906 -51585615 - MIR SINE MIR -133 75 23 571 166 18 24 chr15 49796995 49797164 -51583357 + CT-rich Low_complexity Low_complexity 3 170 0 24 0 0 0 chr15 49797610 49797634 -51582887 + AT_rich Low_complexity Low_complexity 1 24 0 16736 149 6 12 chr15 49798007 49798151 -51582370 + L1PA11 LINE L1 2264 2407 -3754 2106 112 0 14 chr15 49798151 49798467 -51582054 + AluSq SINE Alu 1 312 0 16736 149 6 12 chr15 49798467 49801555 -51578966 + L1PA11 LINE L1 2407 5476 -685 3859 68 2 2 chr15 49801555 49802055 -51578466 - L1PA8 LINE L1 -11 6161 5662 4930 92 11 11 chr15 49802172 49802886 -51577635 + L1PA11 LINE L1 5460 6173 -1 367 235 0 12 chr15 49802895 49802980 -51577541 - MER96B DNA MER1_type? -332 85 2 1547 173 111 4 chr15 49803116 49803387 -51577134 - AluSx SINE Alu -11 301 2 370 311 47 42 chr15 49803476 49803666 -51576855 - MIR SINE MIR -51 211 21 235 263 84 24 chr15 49803670 49803921 -51576600 + L1ME LINE L1 5068 5333 -813 598 295 47 7 chr15 49803924 49804236 -51576285 + L1ME LINE L1 5374 5696 -474 203 250 0 0 chr15 49804236 49804276 -51576245 + (CA)n Simple_repeat Simple_repeat 1 40 0 885 220 26 0 chr15 49804740 49804931 -51575590 + MLT1D LTR MaLR 304 499 -6 558 241 64 99 chr15 49804953 49805550 -51574971 + L1MEd LINE L1 682 1257 -4862 335 227 45 64 chr15 49805724 49805834 -51574687 + L1MEd LINE L1 1373 1480 -4651 215 220 33 88 chr15 49806854 49806945 -51573576 + MIR SINE MIR 126 211 -51 185 0 0 39 chr15 49806995 49807021 -51573500 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1953 114 93 0 chr15 49807443 49807723 -51572798 - AluSg SINE Alu -4 306 1 1942 208 11 57 chr15 49807806 49808422 -51572099 + L1M4 LINE L1 4809 5396 -750 1874 106 3 48 chr15 49808422 49808714 -51571807 + AluY SINE Alu 1 279 -32 996 177 103 29 chr15 49810364 49810607 -51569914 + MIR SINE MIR 2 262 0 350 275 126 22 chr15 49810698 49810880 -51569641 - L1ME3A LINE L1 -2 6168 5968 342 267 92 17 chr15 49810932 49811052 -51569469 - L1MC5 LINE L1 -50 7911 7783 202 271 51 0 chr15 49811233 49811292 -51569229 - MER5A DNA MER1_type -72 117 56 22 0 0 0 chr15 49811717 49811739 -51568782 + AT_rich Low_complexity Low_complexity 1 22 0 722 193 83 0 chr15 49813008 49813153 -51567368 - MER21B LTR ERV1 -379 484 328 828 217 11 21 chr15 49813654 49813843 -51566678 + MER5A DNA MER1_type 1 187 -2 528 309 100 13 chr15 49813952 49814182 -51566339 - MIR SINE MIR -6 256 7 230 296 84 0 chr15 49814349 49814420 -51566101 - L2 LINE L2 -1 3312 3236 248 323 31 31 chr15 49814714 49814810 -51565711 - L2 LINE L2 -17 3255 3160 330 375 62 0 chr15 49815212 49815388 -51565133 - L2 LINE L2 -189 3083 2897 508 284 80 17 chr15 49816510 49816686 -51563835 + MIR3 SINE MIR 20 206 -2 22 0 0 0 chr15 49816786 49816808 -51563713 + AT_rich Low_complexity Low_complexity 1 22 0 429 340 27 2 chr15 49817469 49817621 -51562900 + MIR3 SINE MIR 3 159 -49 339 234 110 55 chr15 49817837 49817982 -51562539 - L2 LINE L2 -5 3308 3156 281 301 12 36 chr15 49819079 49819162 -51561359 + L2 LINE L2 3149 3229 -43 2113 122 0 20 chr15 49819229 49819533 -51560988 + AluSc SINE Alu 1 298 -11 392 308 56 28 chr15 49819765 49819908 -51560613 + MIR3 SINE MIR 37 183 -25 638 285 124 34 chr15 49820870 49821091 -51559430 - MLT1H1 LTR MaLR -4 551 351 198 0 0 0 chr15 49821091 49821113 -51559408 + (TC)n Simple_repeat Simple_repeat 1 22 0 638 285 124 34 chr15 49821113 49821368 -51559153 - MLT1H1 LTR MaLR -204 351 32 24 0 0 0 chr15 49821429 49821453 -51559068 + AT_rich Low_complexity Low_complexity 1 24 0 372 205 197 0 chr15 49822048 49822175 -51558346 - MIR SINE MIR -60 202 51 231 170 0 0 chr15 49822433 49822480 -51558041 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 2009 137 11 29 chr15 49823557 49823907 -51556614 + MER2 DNA MER2_type 1 344 0 984 167 56 14 chr15 49824733 49824948 -51555573 + Charlie4 DNA MER1_type 60 283 -1678 599 207 32 27 chr15 49824949 49825137 -51555384 + Charlie4 DNA MER1_type 1773 1961 0 2023 132 17 3 chr15 49825157 49825453 -51555068 + AluSx SINE Alu 1 300 -12 233 317 97 23 chr15 49825795 49826414 -51554107 - L1MEd LINE L1 -3333 2796 2132 1216 249 32 46 chr15 49826716 49827154 -51553367 - MLT1D LTR MaLR -69 436 5 225 350 49 41 chr15 49827340 49827586 -51552935 - L1MEd LINE L1 -5664 455 208 484 161 46 0 chr15 49827889 49827976 -51552545 + MER58B DNA MER1_type 250 340 -1 197 354 38 0 chr15 49828398 49828477 -51552044 + MIR3 SINE MIR 121 202 -6 423 205 0 0 chr15 49828532 49828615 -51551906 + MIR SINE MIR 178 260 -2 419 286 106 89 chr15 49829068 49829463 -51551058 - LTR33 LTR ERVL 0 521 120 * 1464 200 75 52 chr15 49829461 49829650 -51550871 - MER31B LTR ERV1 -31 435 252 2153 124 124 18 chr15 49829650 49830037 -51550484 + MSTA LTR MaLR 1 428 0 1464 200 75 52 chr15 49830037 49830272 -51550249 - MER31B LTR ERV1 -214 252 1 208 191 95 0 chr15 49830273 49830315 -51550206 + MIR SINE MIR 59 104 -104 567 242 92 40 chr15 49830514 49830817 -51549704 + MLT1J LTR MaLR 1 302 -144 214 327 36 0 chr15 49831017 49831072 -51549449 - L2 LINE L2 -10 3303 3247 560 291 89 0 chr15 49832168 49832381 -51548140 - MIR SINE MIR -11 251 20 388 233 26 35 chr15 49832626 49832742 -51547779 - MIR SINE MIR -90 172 58 484 170 19 0 chr15 49833246 49833352 -51547169 - L1MA8 LINE L1 -5 6286 6179 243 257 29 29 chr15 49834165 49834268 -51546253 + MLT1I LTR MaLR 3 105 -304 241 239 80 0 chr15 49834268 49834356 -51546165 + LTR33 LTR ERVL 1 95 -426 2751 147 14 0 chr15 49834384 49834806 -51545715 - MSTA LTR MaLR 0 428 1 425 248 62 57 chr15 49836032 49836490 -51544031 - L1MC4a LINE L1 -7 6114 5660 773 154 0 0 chr15 49836547 49836664 -51543857 + AluJb SINE Alu 180 296 -16 310 316 0 29 chr15 49836666 49836805 -51543716 - HAL1 LINE L1 -11 2496 2362 * 455 241 51 99 chr15 49836803 49837021 -51543500 - HAL1 LINE L1 -409 2098 1906 2247 125 0 0 chr15 49837021 49837325 -51543196 - AluSx SINE Alu -8 304 1 455 241 51 99 chr15 49837325 49837501 -51543020 - HAL1 LINE L1 -601 1906 1723 367 258 117 8 chr15 49838684 49838804 -51541717 - MIR SINE MIR -107 155 23 405 264 28 0 chr15 49839065 49839171 -51541350 + MER81 DNA DNA 1 109 -5 270 322 21 56 chr15 49839177 49839320 -51541201 + LTR16A LTR ERVL 235 372 -78 1671 178 39 3 chr15 49839794 49840126 -51540395 + L1MD3 LINE L1 5517 5860 -1925 276 102 322 0 chr15 49840131 49840190 -51540331 + MADE1 DNA Mariner 1 78 -2 371 132 0 77 chr15 49840192 49840238 -51540283 + L1MD3 LINE L1 5859 5896 -2099 2710 167 5 72 chr15 49840238 49840790 -51539731 - MLT2B2 LTR ERVL 0 515 1 371 132 0 77 chr15 49840790 49840834 -51539687 + L1MD3 LINE L1 5896 5942 -2053 466 239 18 28 chr15 49840836 49840945 -51539576 - MIR SINE MIR -147 115 8 216 362 53 14 chr15 49842010 49842217 -51538304 + L2 LINE L2 1883 2097 -1217 2567 150 44 2 chr15 49843651 49844103 -51536418 + MER31A LTR ERV1 1 471 -14 2211 102 3 3 chr15 49844104 49844397 -51536124 - AluSq SINE Alu -20 293 1 288 296 69 28 chr15 49844761 49844887 -51535634 + MIR3 SINE MIR 63 198 -10 632 296 76 6 chr15 49845122 49845349 -51535172 - MIR SINE MIR -6 256 20 707 260 17 6 chr15 49847067 49847240 -51533281 - MIR SINE MIR -86 176 2 340 354 113 50 chr15 49849031 49849853 -51530668 - L2 LINE L2 -410 2904 2031 324 276 112 60 chr15 49851326 49851460 -51529061 - MIR SINE MIR -120 142 2 307 310 186 0 chr15 49851628 49851741 -51528780 + L3 LINE CR1 1269 1402 -175 304 254 14 0 chr15 49851814 49851885 -51528636 - MIR SINE MIR -101 161 90 1172 106 6 0 chr15 49852084 49852263 -51528258 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2126 126 13 3 chr15 49852278 49852587 -51527934 - AluSx SINE Alu 0 312 1 398 338 44 38 chr15 49852697 49852857 -51527664 - L2 LINE L2 -2 3270 3110 421 301 175 0 chr15 49853306 49853512 -51527009 + MIR SINE MIR 13 254 -8 1686 187 17 0 chr15 49854733 49855022 -51525499 - AluJo SINE Alu -18 294 1 324 317 143 30 chr15 49855746 49855976 -51524545 + MIR SINE MIR 7 262 0 1671 191 10 7 chr15 49856376 49856664 -51523857 - AluJo SINE Alu -23 289 1 281 341 36 43 chr15 49858087 49858225 -51522296 - MIR3 SINE MIR -62 146 10 2395 241 52 69 chr15 49858507 49859647 -51520874 - MLT1B-int LTR MaLR -134 1237 1 1315 220 71 40 chr15 49859647 49860025 -51520496 - MLT1B LTR MaLR 0 390 1 431 310 0 0 chr15 49860265 49860378 -51520143 - MIR SINE MIR -85 177 65 440 219 133 0 chr15 49860392 49860497 -51520024 - L2 LINE L2 0 3313 3195 205 321 174 0 chr15 49860742 49860851 -51519670 - MIR SINE MIR -58 204 77 448 313 159 9 chr15 49862335 49862416 -51518105 - MIR SINE MIR -16 246 178 7098 42 16 5 chr15 49862416 49863353 -51517168 - L1PA7 LINE L1 0 6154 5212 448 313 159 9 chr15 49863353 49863485 -51517036 - MIR SINE MIR -84 178 1 268 186 42 24 chr15 49863805 49863972 -51516549 + (TA)n Simple_repeat Simple_repeat 1 170 0 395 165 5 77 chr15 49863998 49864192 -51516329 + (TA)n Simple_repeat Simple_repeat 1 180 0 216 239 0 60 chr15 49864203 49864337 -51516184 + (TA)n Simple_repeat Simple_repeat 1 126 0 2380 72 0 25 chr15 49864535 49864854 -51515667 - AluY SINE Alu 0 311 1 659 265 136 20 chr15 49865444 49865738 -51514783 + MLT1J LTR MaLR 9 336 -175 909 251 66 57 chr15 49866001 49866524 -51513997 - LTR38 LTR ERV1 0 541 31 1185 223 45 6 chr15 49867272 49867609 -51512912 + L1MC3 LINE L1 7436 7785 0 21 36 0 0 chr15 49867609 49867637 -51512884 + AT_rich Low_complexity Low_complexity 1 28 0 419 365 81 0 chr15 49868908 49869056 -51511465 - L2 LINE L2 -9 3263 3104 404 82 16 0 chr15 49870388 49870449 -51510072 + (CA)n Simple_repeat Simple_repeat 1 62 0 203 103 26 26 chr15 49870521 49870560 -51509961 + CT-rich Low_complexity Low_complexity 2 40 0 4415 154 21 59 chr15 49871767 49872788 -51507733 + L1MC3 LINE L1 6816 7774 -11 2422 93 0 3 chr15 49872791 49873101 -51507420 + AluSg SINE Alu 2 310 0 263 217 0 67 chr15 49874281 49874341 -51506180 + L3 LINE CR1 1500 1555 -22 2440 183 8 92 chr15 49874405 49874440 -51506081 - MLT2B3 LTR ERVL -6 548 512 195 100 0 0 chr15 49874440 49874470 -51506051 + (TA)n Simple_repeat Simple_repeat 1 30 0 2440 183 8 92 chr15 49874470 49875030 -51505491 - MLT2B3 LTR ERVL -42 512 3 5121 110 30 7 chr15 49875886 49876725 -51503796 - L1MA3 LINE L1 0 6305 5448 418 61 30 0 chr15 49876914 49876980 -51503541 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 732 304 62 4 chr15 49877736 49877963 -51502558 - MIR SINE MIR -19 243 4 1613 249 73 9 chr15 49878181 49878731 -51501790 - HsTC2 DNA Tc2 -3 1895 1311 1400 193 141 19 chr15 49878736 49879061 -51501460 + MLT2B1 LTR ERVL 114 489 -31 207 69 0 0 chr15 49879061 49879090 -51501431 + (CA)n Simple_repeat Simple_repeat 1 29 0 1400 193 141 19 chr15 49879090 49879126 -51501395 + MLT2B1 LTR ERVL 489 519 -1 743 238 43 22 chr15 49879180 49879365 -51501156 - MER5A DNA MER1_type 0 189 1 295 280 104 8 chr15 49879365 49879490 -51501031 - HsTC2 DNA Tc2 -1760 138 2 26 0 0 0 chr15 49879541 49879567 -51500954 + AT_rich Low_complexity Low_complexity 1 26 0 5447 15 0 0 chr15 49879567 49880181 -51500340 - L1PA3 LINE L1 0 6155 5542 327 77 31 15 chr15 49880327 49880392 -51500129 + (TA)n Simple_repeat Simple_repeat 2 67 0 220 262 167 0 chr15 49880462 49880546 -51499975 - L3 LINE CR1 -123 1454 1357 333 345 104 12 chr15 49881203 49881452 -51499069 + L2 LINE L2 201 472 -2842 1871 154 30 25 chr15 49881529 49881892 -51498629 - MLT1A1 LTR MaLR 0 365 1 314 358 14 39 chr15 49881921 49882128 -51498393 + L2 LINE L2 2467 2668 -646 181 293 102 18 chr15 49882333 49882471 -51498050 - MIR3 SINE MIR -6 202 50 490 265 136 12 chr15 49884559 49884721 -51495800 + MIR3 SINE MIR 23 204 -4 21 89 0 0 chr15 49885854 49885910 -51494611 + AT_rich Low_complexity Low_complexity 1 56 0 602 196 52 152 chr15 49885913 49886321 -51494200 + L1MC4a LINE L1 5402 5768 -394 * 807 158 87 11 chr15 49886316 49886387 -51494134 + L1MA9 LINE L1 6115 6179 -133 228 86 0 0 chr15 49886387 49886422 -51494099 + (TA)n Simple_repeat Simple_repeat 2 36 0 807 158 87 11 chr15 49886422 49886533 -51493988 + L1MA9 LINE L1 6179 6311 -1 731 314 20 0 chr15 49886610 49886865 -51493656 + L1ME3 LINE L1 5522 5781 -2027 1228 244 43 11 chr15 49886893 49887242 -51493279 + L1ME3 LINE L1 5775 6134 -28 234 344 76 66 chr15 49887621 49887923 -51492598 - L2 LINE L2 -2 3270 2966 318 26 0 0 chr15 49889303 49889342 -51491179 + (CA)n Simple_repeat Simple_repeat 2 40 0 1384 263 50 28 chr15 49889376 49890138 -51490383 - HERVL LTR ERVL -3591 2063 1275 369 261 39 15 chr15 49890145 49890275 -51490246 + L1M4 LINE L1 3043 3175 -2971 320 221 26 0 chr15 49890455 49890532 -51489989 - Tigger5 DNA MER2_type -2244 79 1 265 277 69 19 chr15 49890532 49890691 -51489830 + L1MC4a LINE L1 5834 6000 -1808 342 361 34 24 chr15 49890902 49891110 -51489411 + L1MC4a LINE L1 6429 6638 -1170 * 386 335 62 41 chr15 49891100 49891294 -51489227 + L1ME LINE L1 146 343 -5862 312 310 124 16 chr15 49891685 49891927 -51488594 + L1ME LINE L1 793 1060 -5336 644 285 72 29 chr15 49891958 49892544 -51487977 + L1ME LINE L1 1072 1682 -4714 263 328 0 8 chr15 49892623 49892742 -51487779 + L1ME LINE L1 1703 1820 -4576 21 36 0 0 chr15 49892866 49892894 -51487627 + AT_rich Low_complexity Low_complexity 1 28 0 971 294 125 13 chr15 49892911 49893673 -51486848 - L1M4 LINE L1 -1712 4434 3588 300 355 100 17 chr15 49893941 49894172 -51486349 - L1MEd LINE L1 -5700 419 170 312 210 0 58 chr15 49894341 49894419 -51486102 + MIR SINE MIR 88 102 -106 1745 151 51 43 chr15 49894419 49894791 -51485730 + THE1C LTR MaLR 1 375 0 312 210 0 58 chr15 49894791 49894831 -51485690 + MIR SINE MIR 102 143 -65 325 255 21 53 chr15 49895245 49895339 -51485182 - MIR SINE MIR -70 192 102 201 277 205 0 chr15 49897153 49897236 -51483285 - MER5B DNA MER1_type -78 100 1 719 247 71 6 chr15 49897256 49897426 -51483095 - MER5A DNA MER1_type 0 189 9 275 259 214 27 chr15 49897438 49897550 -51482971 + L2 LINE L2 3127 3259 -13 2216 95 0 7 chr15 49897693 49898010 -51482511 + AluSp SINE Alu 1 315 0 381 226 70 0 chr15 49899945 49900060 -51480461 + MIR SINE MIR 134 256 -6 701 340 21 4 chr15 49901037 49901278 -51479243 + MIR SINE MIR 10 254 -8 506 216 61 78 chr15 49901564 49901795 -51478726 - MER102b DNA MER1_type -11 330 104 966 219 17 9 chr15 49901832 49902065 -51478456 + MER96B DNA MER1_type? 1 235 -182 465 228 228 30 chr15 49902550 49902717 -51477804 + MIR SINE MIR 2 201 -61 7838 20 1 1 chr15 49902900 49904584 -51475937 - L1PA3 LINE L1 0 6155 4459 207 200 0 0 chr15 49904703 49904748 -51475773 + A-rich Low_complexity Low_complexity 1 45 0 316 197 98 66 chr15 49904948 49905070 -51475451 + MIR SINE MIR 14 140 -68 2416 180 34 10 chr15 49905653 49906069 -51474452 - MSTB LTR MaLR 0 426 1 281 265 0 41 chr15 49906486 49906584 -51473937 + CT-rich Low_complexity Low_complexity 2 95 0 262 284 14 0 chr15 49906597 49906671 -51473850 - L2 LINE L2 -5 3308 3234 546 274 122 39 chr15 49907077 49907332 -51473189 - L2 LINE L2 -13 3300 3025 231 280 27 13 chr15 49907350 49907425 -51473096 - MER5B DNA MER1_type -83 95 20 1205 220 5 0 chr15 49907863 49908077 -51472444 - MER58A DNA MER1_type -6 218 4 377 293 20 0 chr15 49908370 49908469 -51472052 + MIR3 SINE MIR 104 204 -4 252 140 20 20 chr15 49910037 49910087 -51470434 - L1MB3 LINE L1 -28 6155 6106 597 270 10 29 chr15 49910215 49910419 -51470102 - MIR SINE MIR -4 258 59 361 315 121 6 chr15 49910763 49910928 -51469593 + MIR SINE MIR 4 187 -75 230 315 54 0 chr15 49910970 49911062 -51469459 - L2 LINE L2 -2 3270 3174 562 271 47 12 chr15 49915262 49915440 -51465081 + MIR SINE MIR 37 218 -44 511 289 24 62 chr15 49916948 49917159 -51463362 + L2 LINE L2 3111 3313 0 884 329 58 22 chr15 49917353 49917901 -51462620 - L1MC4a LINE L1 -1927 5881 5314 22 56 0 0 chr15 49919363 49919399 -51461122 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chr15 49919725 49919753 -51460768 + AT_rich Low_complexity Low_complexity 1 28 0 228 283 211 33 chr15 49920433 49920585 -51459936 + MIR SINE MIR 20 198 -64 1642 210 34 41 chr15 49921601 49921694 -51458827 + LTR52 LTR ERVL 1 93 -328 2380 123 53 14 chr15 49921694 49922053 -51458468 - THE1C LTR MaLR 0 375 3 1642 210 34 41 chr15 49922053 49922373 -51458148 + LTR52 LTR ERVL 93 411 -10 882 245 69 0 chr15 49922487 49922691 -51457830 - MER58A DNA MER1_type -6 218 1 910 280 81 37 chr15 49924359 49924809 -51455712 - MLT1J2 LTR MaLR 0 450 10 1832 163 0 7 chr15 49925257 49925564 -51454957 + AluJb SINE Alu 1 305 -7 21 0 0 0 chr15 49925735 49925756 -51454765 + AT_rich Low_complexity Low_complexity 1 21 0 436 218 0 0 chr15 49926081 49926159 -51454362 + MER21B LTR ERV1 12 89 -774 709 234 26 13 chr15 49926214 49926368 -51454153 + MER21B LTR ERV1 98 253 -610 1132 207 25 54 chr15 49926373 49926653 -51453868 + MER21B LTR ERV1 479 750 -113 611 286 50 54 chr15 49927111 49927352 -51453169 + MIR SINE MIR 2 241 -21 21 0 0 0 chr15 49927844 49927865 -51452656 + AT_rich Low_complexity Low_complexity 1 21 0 294 256 165 16 chr15 49927887 49928008 -51452513 - MIR SINE MIR -50 212 74 331 182 190 66 chr15 49928389 49928510 -51452011 + MIR SINE MIR 124 259 -3 328 314 86 0 chr15 49928709 49928849 -51451672 + ERVL-F LTR ERVL 1624 1775 -3989 288 323 31 0 chr15 49928824 49928954 -51451567 + ERVL-F LTR ERVL 1704 1837 -3159 * 1474 254 80 41 chr15 49928969 49929533 -51450988 + ERVL-F LTR ERVL 5156 5741 -23 1496 268 154 3 chr15 49929551 49930123 -51450398 + MLT2F LTR ERVL 6 663 0 238 338 115 14 chr15 49930413 49930552 -51449969 - MIR3 SINE MIR -48 160 8 206 250 0 0 chr15 49932839 49932883 -51447638 + (CAT)n Simple_repeat Simple_repeat 3 46 0 392 267 75 41 chr15 49933534 49933680 -51446841 + MER69A DNA AcHobo 26 176 -1 317 233 57 0 chr15 49933691 49933800 -51446721 - MIR SINE MIR -71 191 73 279 374 98 5 chr15 49934836 49935050 -51445471 + L2 LINE L2 2819 3052 -261 496 254 56 35 chr15 49935651 49935793 -51444728 + L2 LINE L2 3128 3272 0 418 301 49 14 chr15 49935912 49936055 -51444466 - MIR SINE MIR -107 155 8 335 335 37 19 chr15 49936102 49936263 -51444258 - MIR SINE MIR 0 262 99 346 183 14 14 chr15 49936782 49936853 -51443668 - MLT1C LTR MaLR 0 505 435 181 111 0 28 chr15 49936914 49936950 -51443571 - L2 LINE L2 0 3313 3279 1004 225 119 85 chr15 49936960 49937231 -51443290 - MLT1C LTR MaLR -76 391 131 2036 99 27 24 chr15 49937231 49937554 -51442967 - AluSg1 SINE Alu 0 309 2 1008 61 27 0 chr15 49937554 49937702 -51442819 + (TTTC)n Simple_repeat Simple_repeat 2 153 0 2019 112 0 21 chr15 49937703 49937990 -51442531 - AluSq SINE Alu -32 281 1 2578 55 3 3 chr15 49937999 49938309 -51442212 - AluY SINE Alu -1 310 1 1004 225 119 85 chr15 49938309 49938402 -51442119 - MLT1C LTR MaLR -343 124 1 2233 165 11 22 chr15 49938491 49938860 -51441661 + MLT1A1 LTR MaLR 1 365 0 266 312 138 7 chr15 49938907 49939045 -51441476 - L2 LINE L2 -13 3259 3104 228 339 80 27 chr15 49939119 49939231 -51441290 - MIR3 SINE MIR -52 156 39 365 244 98 0 chr15 49940229 49940352 -51440169 - MER103 DNA DNA -24 142 8 550 345 25 8 chr15 49940619 49940854 -51439667 - MIR SINE MIR -17 245 7 23 0 0 0 chr15 49941011 49941034 -51439487 + AT_rich Low_complexity Low_complexity 1 23 0 1654 115 33 29 chr15 49941048 49941290 -51439231 - THE1C LTR MaLR 0 375 151 2409 128 16 25 chr15 49941290 49941657 -51438864 - THE1B LTR MaLR 0 364 1 1654 115 33 29 chr15 49941657 49941691 -51438830 - THE1C LTR MaLR -224 151 119 219 333 0 14 chr15 49941823 49941895 -51438626 + L2 LINE L2 3203 3273 -40 23 54 0 0 chr15 49942245 49942282 -51438239 + AT_rich Low_complexity Low_complexity 1 37 0 207 302 32 0 chr15 49942880 49942943 -51437578 + L2 LINE L2 2267 2331 -983 1590 274 81 35 chr15 49943627 49944284 -51436237 + L2 LINE L2 2127 2813 -501 2219 121 38 0 chr15 49944297 49944612 -51435909 + MER1B DNA MER1_type 1 327 -12 2159 174 29 3 chr15 49944612 49944996 -51435525 + L1MC2 LINE L1 5940 6333 -11 345 294 52 43 chr15 49945010 49945247 -51435274 + L2 LINE L2 2782 3035 -278 311 364 7 58 chr15 49945512 49945666 -51434855 + L2 LINE L2 3127 3272 0 246 62 0 0 chr15 49947281 49947313 -51433208 + (TCCA)n Simple_repeat Simple_repeat 4 35 0 237 108 0 0 chr15 49947315 49947352 -51433169 + (CA)n Simple_repeat Simple_repeat 2 38 0 228 293 8 73 chr15 49948663 49948786 -51431735 + MIR3 SINE MIR 55 169 -39 782 259 74 4 chr15 49948920 49949163 -51431358 + L1ME3A LINE L1 5807 6066 -104 2677 111 58 23 chr15 49949170 49949603 -51430918 - LTR7 LTR ERV1 -2 448 1 2496 107 45 35 chr15 49949603 49950197 -51430324 - HERVH LTR ERV1 0 7713 5600 4401 142 3 1 chr15 49950198 49950859 -51429662 - HERVH LTR ERV1 -2564 5149 4488 3344 120 6 2 chr15 49950861 49951361 -51429160 - HERVH LTR ERV1 -3720 3993 3492 897 143 20 0 chr15 49951351 49951498 -51429023 - HERVH LTR ERV1 -4423 3290 3141 * 15528 100 48 48 chr15 49951493 49954426 -51426095 - HERVH LTR ERV1 -4726 2987 1 2753 107 58 21 chr15 49954428 49954860 -51425661 - LTR7 LTR ERV1 -2 448 1 306 203 14 27 chr15 49954877 49954951 -51425570 + L1ME3A LINE L1 6084 6156 -14 750 250 44 32 chr15 49955011 49955263 -51425258 - MIR SINE MIR -3 259 5 2255 109 0 16 chr15 49957957 49958270 -51422251 + AluSg SINE Alu 1 308 -2 946 263 203 32 chr15 49959010 49959525 -51420996 - MLT1G1 LTR MaLR 0 555 1 1130 258 118 47 chr15 49959733 49960199 -51420322 - MLT1G1 LTR MaLR -94 501 3 732 250 12 12 chr15 49960199 49960367 -51420154 + L3 LINE CR1 1409 1576 -1 6254 97 13 0 chr15 49961896 49963027 -51417494 - L1PA8 LINE L1 -2 6170 5024 556 308 72 28 chr15 49963149 49963399 -51417122 - MIR SINE MIR 0 262 2 290 299 64 37 chr15 49964777 49964964 -51415557 + L2 LINE L2 2076 2267 -1047 2012 196 58 23 chr15 49965628 49966112 -51414409 + MLT1D LTR MaLR 1 501 -4 538 366 100 30 chr15 49966158 49966820 -51413701 + L2 LINE L2 156 863 -2451 498 313 109 47 chr15 49966902 49967369 -51413152 + L2 LINE L2 2378 2873 -441 1343 217 16 13 chr15 49968656 49968974 -51411547 - MER58B DNA MER1_type -22 319 1 259 191 183 38 chr15 49971430 49971561 -51408960 + L1ME4a LINE L1 5685 5834 -287 237 276 46 0 chr15 49971653 49971740 -51408781 + L1ME4a LINE L1 5965 6055 -66 21 0 0 0 chr15 49972801 49972822 -51407699 + AT_rich Low_complexity Low_complexity 1 21 0 260 324 20 0 chr15 49973151 49973253 -51407268 - MER117 DNA MER1_type -56 141 38 553 318 33 21 chr15 49974707 49974949 -51405572 - MIR SINE MIR 0 262 18 333 285 15 0 chr15 49975399 49975536 -51404985 - MER117 DNA MER1_type -55 142 4 317 240 0 135 chr15 49975542 49975646 -51404875 + MIR SINE MIR 37 126 -82 321 292 67 28 chr15 49975798 49975951 -51404570 + MIR SINE MIR 30 188 -74 186 196 304 11 chr15 49976374 49976466 -51404055 - L2 LINE L2 -6 3266 3148 26 30 0 0 chr15 49976750 49976783 -51403738 + AT_rich Low_complexity Low_complexity 1 33 0 516 291 77 5 chr15 49976784 49976980 -51403541 - L1ME3A LINE L1 -58 6112 5903 200 206 0 0 chr15 49978672 49978706 -51401815 + (TATATG)n Simple_repeat Simple_repeat 6 39 0 1474 186 40 93 chr15 49980455 49980981 -51399540 + LTR54B LTR ERV1 1 498 0 395 300 118 61 chr15 49981114 49981658 -51398863 - L2 LINE L2 -4 3309 2720 318 106 0 0 chr15 49981658 49981705 -51398816 + (ATATG)n Simple_repeat Simple_repeat 2 48 0 395 300 118 61 chr15 49981705 49981817 -51398704 - L2 LINE L2 -593 2720 2616 230 254 66 77 chr15 49981973 49982154 -51398367 + MIR SINE MIR 84 262 0 222 37 0 0 chr15 49983317 49983344 -51397177 + (TC)n Simple_repeat Simple_repeat 1 27 0 360 0 0 0 chr15 49983346 49983386 -51397135 + (TG)n Simple_repeat Simple_repeat 1 40 0 249 296 111 12 chr15 49983690 49983771 -51396750 - L2 LINE L2 -34 3279 3191 525 283 19 13 chr15 49983800 49983959 -51396562 - MIR SINE MIR -52 210 51 1337 217 119 12 chr15 49984064 49984401 -51396120 - MLT1A2 LTR MaLR -1 373 1 265 305 74 0 chr15 49985577 49985672 -51394849 - MIR SINE MIR -57 205 104 230 315 41 14 chr15 49985707 49985780 -51394741 + L2 LINE L2 3176 3250 -22 236 275 22 22 chr15 49986446 49986537 -51393984 + MIR3 SINE MIR 106 196 -12 264 308 75 19 chr15 49988200 49988307 -51392214 - L2 LINE L2 -24 3289 3177 746 279 70 45 chr15 49988487 49989045 -51391476 - MER115 DNA AcHobo -26 667 3 3722 284 94 19 chr15 49989068 49990398 -51390123 + L2 LINE L2 368 1825 -1489 2346 35 74 0 chr15 49990398 49990681 -51389840 - AluY SINE Alu -7 304 1 3722 284 94 19 chr15 49990681 49990844 -51389677 + L2 LINE L2 1825 1974 -1340 212 184 0 20 chr15 49991012 49991061 -51389460 + CT-rich Low_complexity Low_complexity 1 48 0 251 28 28 0 chr15 49991427 49991463 -51389058 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 3841 7 0 0 chr15 49991463 49991893 -51388628 - L1PA2 LINE L1 -18 6137 5708 203 147 0 0 chr15 49993229 49993263 -51387258 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 288 278 38 53 chr15 49993309 49993442 -51387079 + MIR SINE MIR 85 215 -47 183 194 0 0 chr15 49994064 49994095 -51386426 - L3 LINE CR1 -1429 148 118 886 179 92 15 chr15 49994243 49994438 -51386083 - MER6B DNA MER2_type 0 210 1 1053 324 147 9 chr15 49995049 49995595 -51384926 + L3 LINE CR1 946 1566 -11 748 156 47 8 chr15 49995871 49995999 -51384522 + L1MC1 LINE L1 6193 6325 -8 822 317 95 4 chr15 49996101 49996562 -51383959 - LTR33 LTR ERVL -17 504 2 2188 105 0 0 chr15 49997800 49998076 -51382445 + AluSx SINE Alu 7 282 -30 211 315 62 69 chr15 49999355 49999485 -51381036 + L2 LINE L2 2726 2854 -460 238 381 144 0 chr15 49999571 49999689 -51380832 - L2 LINE L2 -1 3271 3137 873 339 53 18 chr15 49999814 50000249 -51380272 - L2 LINE L2 -303 3010 2565 506 277 65 82 chr15 50000278 50000570 -51379951 + L2 LINE L2 2986 3272 0 203 152 0 0 chr15 50001147 50001180 -51379341 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 695 194 0 23 chr15 50001189 50001318 -51379203 + Tigger3(Golem) DNA MER2_type 27 152 -2877 * 1241 145 77 5 chr15 50001313 50001534 -51378987 + Tigger3(Golem) DNA MER2_type 2792 3028 -1 180 200 0 0 chr15 50001534 50001574 -51378947 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 252 0 0 0 chr15 50001589 50001617 -51378904 + (CA)n Simple_repeat Simple_repeat 2 29 0 480 226 35 0 chr15 50001823 50001938 -51378583 + MIR SINE MIR 98 216 -46 427 338 88 48 chr15 50001934 50002334 -51378187 - L2 LINE L2 -339 2975 2560 * 546 248 186 0 chr15 50002856 50002881 -51377640 - MIR SINE MIR -32 230 211 351 0 0 0 chr15 50002881 50002920 -51377601 + (CA)n Simple_repeat Simple_repeat 2 40 0 546 248 186 0 chr15 50002920 50003039 -51377482 - MIR SINE MIR -51 211 59 283 234 70 67 chr15 50005044 50005175 -51375346 + MIR SINE MIR 30 166 -42 455 200 240 17 chr15 50005681 50005856 -51374665 - LTR50 LTR ERVL -27 768 555 * 673 252 219 8 chr15 50005850 50006207 -51374314 - LTR50 LTR ERVL -353 442 11 2373 52 0 7 chr15 50006454 50006741 -51373780 + AluY SINE Alu 21 305 -6 2222 98 10 3 chr15 50006743 50007049 -51373472 + AluSx SINE Alu 1 308 -4 1241 78 0 18 chr15 50007066 50007211 -51373310 + MER107 DNA MER1_type 1 144 -53 182 36 0 36 chr15 50007211 50007239 -51373282 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1241 78 0 18 chr15 50007239 50007259 -51373262 + MER107 DNA MER1_type 144 163 -34 269 336 72 8 chr15 50007327 50007452 -51373069 - L2 LINE L2 -495 2819 2687 750 242 63 83 chr15 50007741 50008104 -51372417 - L1MC/D LINE L1 -2174 5634 5279 277 282 107 0 chr15 50008217 50008366 -51372155 - L1MC/D LINE L1 -1097 5049 4885 36 40 0 0 chr15 50008402 50008452 -51372069 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr15 50008725 50008746 -51371775 + AT_rich Low_complexity Low_complexity 1 21 0 249 190 35 0 chr15 50010399 50010457 -51370064 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 1004 212 23 18 chr15 50010471 50010688 -51369833 - MER20 DNA MER1_type -1 218 1 283 323 251 10 chr15 50010762 50010957 -51369564 - MIR SINE MIR -17 245 4 182 326 0 0 chr15 50011164 50011210 -51369311 + L2 LINE L2 3223 3268 -4 313 268 114 16 chr15 50011827 50011950 -51368571 - MIR SINE MIR -97 165 31 2560 105 31 0 chr15 50011991 50012344 -51368177 + THE1B LTR MaLR 1 364 0 284 329 75 25 chr15 50013599 50013760 -51366761 - MIR SINE MIR -65 197 29 924 169 106 29 chr15 50013780 50013987 -51366534 - MER58A DNA MER1_type -1 223 1 306 288 93 60 chr15 50014177 50014392 -51366129 + MIR SINE MIR 20 241 -21 978 184 25 1 chr15 50014392 50014705 -51365816 - MLT1A1 LTR MaLR 0 365 10 1087 249 123 37 chr15 50014921 50015351 -51365170 + MLT1L LTR MaLR 142 608 -7 234 418 9 18 chr15 50015352 50015462 -51365059 + MIR3 SINE MIR 51 159 -49 1113 192 86 13 chr15 50015568 50015870 -51364651 + MER33 DNA MER1_type 1 324 0 236 326 0 0 chr15 50016517 50016566 -51363955 + MER58 DNA MER1_type 1 49 -292 * 320 215 0 0 chr15 50016562 50016627 -51363894 + MER58 DNA MER1_type 2356 2420 0 253 226 16 0 chr15 50016645 50016707 -51363814 + GA-rich Low_complexity Low_complexity 1 63 0 321 157 24 24 chr15 50016707 50016790 -51363731 + A-rich Low_complexity Low_complexity 5 87 0 207 0 0 0 chr15 50017074 50017097 -51363424 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 5660 53 21 1 chr15 50017099 50017860 -51362661 - L1PA2 LINE L1 -2 6153 5378 6466 24 0 0 chr15 50018024 50019121 -51361400 - L1P1 LINE L1 -448 5707 4611 * 11026 26 0 0 chr15 50019120 50020419 -51360102 + L1P LINE L1 3583 4881 -1265 801 119 19 127 chr15 50020519 50020888 -51359633 + L1P LINE L1 4289 4617 -1529 319 286 52 26 chr15 50020958 50021112 -51359409 - L1M4 LINE L1 -3153 2993 2836 29 28 0 0 chr15 50021242 50021278 -51359243 + AT_rich Low_complexity Low_complexity 1 36 0 1211 170 18 31 chr15 50021672 50021896 -51358625 + AluJb SINE Alu 88 308 -4 429 286 75 57 chr15 50022038 50022370 -51358151 - L1 LINE L1 -1542 4604 4267 2567 115 0 3 chr15 50022557 50022922 -51357599 - THE1B LTR MaLR 0 364 1 896 138 33 7 chr15 50023227 50023379 -51357142 - MLT2C2 LTR ERVL -213 251 96 2473 94 5 27 chr15 50023389 50023762 -51356759 - L1PB1 LINE L1 -7 6144 5780 457 167 16 0 chr15 50023765 50023891 -51356630 + (TA)n Simple_repeat Simple_repeat 2 129 0 6189 179 11 6 chr15 50023892 50025719 -51354802 - L1PB1 LINE L1 -353 5798 3970 673 132 9 0 chr15 50025719 50025825 -51354696 - MLT2C2 LTR ERVL -357 107 1 3310 58 2 0 chr15 50026407 50026862 -51353659 + L1PA8 LINE L1 5737 6192 0 365 276 0 16 chr15 50027180 50027303 -51353218 - MER94 DNA DNA -9 125 5 1002 136 36 54 chr15 50028321 50028542 -51351979 + MER20 DNA MER1_type 1 217 -2 606 307 67 11 chr15 50029394 50029627 -51350894 + MIR SINE MIR 21 260 -2 1742 131 0 4 chr15 50030384 50030628 -51349893 - AluSq SINE Alu -70 243 1 1580 266 174 33 chr15 50030641 50031647 -51348874 - HAL1 LINE L1 -240 2267 1120 861 125 132 0 chr15 50031648 50031784 -51348737 - AluSg/x SINE Alu -22 288 135 279 241 0 0 chr15 50031841 50031895 -51348626 + L2 LINE L2 3223 3276 -37 252 0 0 0 chr15 50031903 50031931 -51348590 + (A)n Simple_repeat Simple_repeat 1 28 0 2461 158 16 5 chr15 50031986 50032026 -51348495 - L1MB2 LINE L1 -119 6052 6013 1357 234 112 30 chr15 50032026 50032632 -51347889 - L1MD2 LINE L1 -355 6004 5338 962 304 177 10 chr15 50032656 50033147 -51347374 - HAL1 LINE L1 -1886 621 49 1911 131 32 0 chr15 50033597 50033967 -51346554 - AluSx SINE Alu 0 379 1 264 256 25 76 chr15 50034500 50034636 -51345885 - MIR SINE MIR -63 145 24 368 136 117 0 chr15 50037240 50037343 -51343178 + MER96B DNA MER1_type? 65 179 -238 22 56 0 0 chr15 50037945 50037981 -51342540 + AT_rich Low_complexity Low_complexity 1 36 0 257 203 0 0 chr15 50038558 50038622 -51341899 + L1MC4 LINE L1 6640 6703 -1339 189 0 0 0 chr15 50038632 50038653 -51341868 + (CA)n Simple_repeat Simple_repeat 2 22 0 26 0 0 0 chr15 50038704 50038730 -51341791 + AT_rich Low_complexity Low_complexity 1 26 0 300 342 56 12 chr15 50039381 50039542 -51340979 + MARNA DNA Mariner 16 183 -403 207 220 0 0 chr15 50041517 50041567 -51338954 + GA-rich Low_complexity Low_complexity 4 53 0 21 36 0 0 chr15 50045616 50045644 -51334877 + AT_rich Low_complexity Low_complexity 1 28 0 242 29 29 0 chr15 50047090 50047125 -51333396 + (GA)n Simple_repeat Simple_repeat 2 37 0 183 246 0 66 chr15 50049224 50049285 -51331236 - L2 LINE L2 0 3313 3257 211 365 43 9 chr15 50049848 50049963 -51330558 - L2 LINE L2 -10 3303 3185 183 183 0 100 chr15 50051596 50051656 -51328865 + L3 LINE CR1 898 951 -626 180 0 0 0 chr15 50052907 50052927 -51327594 + (TA)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr15 50052934 50052962 -51327559 + AT_rich Low_complexity Low_complexity 1 28 0 404 234 73 36 chr15 50053050 50053187 -51327334 + MIR3 SINE MIR 51 192 -16 4974 150 28 3 chr15 50055816 50056685 -51323836 + L1MA4 LINE L1 5402 6291 -9 213 392 42 39 chr15 50057402 50057662 -51322859 + L2 LINE L2 2823 3083 -189 637 265 39 29 chr15 50061005 50061209 -51319312 + MIR SINE MIR 57 262 0 22 0 0 0 chr15 50061621 50061643 -51318878 + AT_rich Low_complexity Low_complexity 1 22 0 316 322 60 38 chr15 50062490 50062673 -51317848 + L1M2 LINE L1 2325 2511 -4338 498 344 122 33 chr15 50063315 50064143 -51316378 + L1M2 LINE L1 2843 3744 -3104 42070 35 21 5 chr15 50064149 50070198 -51310323 + L1PA2 LINE L1 4 6155 0 469 305 29 42 chr15 50070198 50070437 -51310084 + L1M2 LINE L1 3879 4114 -2734 381 293 44 40 chr15 50070479 50070728 -51309793 + L1M2 LINE L1 4605 4854 -1994 1605 86 10 0 chr15 50070742 50070951 -51309570 - AluSp SINE Alu -102 211 1 288 323 116 26 chr15 50070967 50071122 -51309399 - L2 LINE L2 -2 3270 3102 209 33 33 0 chr15 50071454 50071484 -51309037 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 286 304 40 54 chr15 50072623 50072771 -51307750 - L2 LINE L2 0 3313 3168 260 345 42 14 chr15 50072942 50073084 -51307437 - MIR SINE MIR -55 207 62 235 276 103 35 chr15 50073580 50073667 -51306854 - L2 LINE L2 -11 3261 3169 1099 205 42 5 chr15 50073698 50073913 -51306608 - MER58A DNA MER1_type 0 224 2 638 298 69 67 chr15 50074280 50074912 -51305609 - L2 LINE L2 -2 3311 2679 264 77 0 0 chr15 50075370 50075409 -51305112 + (CA)n Simple_repeat Simple_repeat 2 40 0 240 86 0 0 chr15 50075649 50075684 -51304837 + (TG)n Simple_repeat Simple_repeat 2 36 0 937 241 51 5 chr15 50078372 50078567 -51301954 + MER63A DNA MER1_type 7 210 0 233 360 65 20 chr15 50078574 50078727 -51301794 - MIR SINE MIR -102 160 1 213 174 22 22 chr15 50080346 50080392 -51300129 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 347 341 12 17 chr15 50080890 50081063 -51299458 + MER117 DNA MER1_type 6 177 -20 182 296 136 34 chr15 50081119 50081207 -51299314 + MIR3 SINE MIR 86 182 -26 25 65 0 0 chr15 50084814 50084860 -51295661 + AT_rich Low_complexity Low_complexity 1 46 0 309 268 304 0 chr15 50085040 50085152 -51295369 + MER5A DNA MER1_type 44 189 0 683 258 0 22 chr15 50085160 50085342 -51295179 + MER5B DNA MER1_type 1 178 0 23 0 0 0 chr15 50086136 50086159 -51294362 + AT_rich Low_complexity Low_complexity 1 23 0 24 41 0 20 chr15 50086276 50086304 -51294217 + AT_rich Low_complexity Low_complexity 1 29 -19 910 44 0 0 chr15 50086304 50086418 -51294103 - L1PA14 LINE L1 -3 6158 6045 24 41 0 20 chr15 50086418 50086438 -51294083 + AT_rich Low_complexity Low_complexity 29 48 0 23 54 0 0 chr15 50087163 50087200 -51293321 + AT_rich Low_complexity Low_complexity 1 37 0 195 424 0 17 chr15 50087398 50087516 -51293005 + MIR SINE MIR 21 136 -72 269 347 100 13 chr15 50087688 50087838 -51292683 - MER5A DNA MER1_type -11 178 16 817 323 81 0 chr15 50088371 50088743 -51291778 - L1MC4a LINE L1 -1896 5912 5511 529 245 80 80 chr15 50088920 50089157 -51291364 - MIR SINE MIR -14 248 12 185 359 28 69 chr15 50089141 50089358 -51291163 - L2 LINE L2 -721 2593 2386 * 22 88 0 0 chr15 50090660 50090717 -51289804 + AT_rich Low_complexity Low_complexity 1 57 0 206 121 0 0 chr15 50090904 50090937 -51289584 + (T)n Simple_repeat Simple_repeat 1 33 0 21 89 0 0 chr15 50090981 50091037 -51289484 + AT_rich Low_complexity Low_complexity 1 56 0 398 314 108 36 chr15 50091248 50091554 -51288967 - L3 LINE CR1 -108 1469 1142 1317 118 4 13 chr15 50092534 50092762 -51287759 - L1MA8 LINE L1 0 6291 6066 3759 127 26 17 chr15 50092771 50093686 -51286835 + L1PA12 LINE L1 5275 6145 -21 4458 144 17 17 chr15 50093698 50094809 -51285712 - L1MA8 LINE L1 -219 6072 4963 416 229 25 0 chr15 50094883 50095001 -51285520 + L1M4 LINE L1 5042 5162 -984 2255 105 0 0 chr15 50096312 50096607 -51283914 - AluSx SINE Alu -17 295 1 273 248 0 74 chr15 50096617 50096738 -51283783 - HsTC2 DNA Tc2 -1141 757 646 266 233 0 0 chr15 50096883 50096943 -51283578 - HsTC2 DNA Tc2 -1619 279 220 386 297 25 0 chr15 50097112 50097230 -51283291 - L2 LINE L2 0 3313 3193 251 236 0 0 chr15 50097230 50097285 -51283236 - HsTC2 DNA Tc2 -1821 77 23 21 0 0 0 chr15 50098009 50098030 -51282491 + AT_rich Low_complexity Low_complexity 1 21 0 320 0 25 0 chr15 50098476 50098516 -51282005 + (CA)n Simple_repeat Simple_repeat 2 42 0 250 235 29 0 chr15 50098522 50098590 -51281931 + (TA)n Simple_repeat Simple_repeat 2 71 0 334 189 111 22 chr15 50099092 50099182 -51281339 + MIR SINE MIR 119 216 -46 398 300 58 58 chr15 50100145 50100385 -51280136 - MER102b DNA MER1_type -10 331 92 588 349 34 13 chr15 50101574 50101809 -51278712 - L2 LINE L2 0 3272 3033 278 268 56 0 chr15 50101898 50101969 -51278552 + L2 LINE L2 3198 3272 0 285 379 19 28 chr15 50101977 50102188 -51278333 - L2 LINE L2 -358 2956 2748 243 0 0 0 chr15 50102213 50102240 -51278281 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 200 328 94 0 chr15 50102681 50102745 -51277776 - L2 LINE L2 -565 2749 2680 445 314 54 32 chr15 50103047 50103232 -51277289 + MIR3 SINE MIR 18 206 -2 27 49 0 0 chr15 50105376 50105417 -51275104 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr15 50106467 50106495 -51274026 + AT_rich Low_complexity Low_complexity 1 28 0 186 301 11 65 chr15 50106595 50106688 -51273833 + MIR SINE MIR 57 144 -118 26 50 0 0 chr15 50107971 50108011 -51272510 + AT_rich Low_complexity Low_complexity 1 40 0 793 210 60 86 chr15 50108483 50108592 -51271929 + LTR48B LTR ERV1 385 495 -149 1963 108 44 80 chr15 50108592 50108979 -51271542 - THE1C LTR MaLR 0 375 3 793 210 60 86 chr15 50108979 50109136 -51271385 + LTR48B LTR ERV1 495 644 0 1053 287 36 25 chr15 50110449 50110808 -51269713 + MER20B DNA MER1_type 6 368 -415 390 189 61 1 chr15 50110935 50111109 -51269412 + MER20B DNA MER1_type 537 743 -40 335 363 96 6 chr15 50111687 50111844 -51268677 - L2 LINE L2 0 3272 3102 194 269 0 58 chr15 50111905 50111957 -51268564 + L2 LINE L2 3209 3257 -15 206 323 101 10 chr15 50113196 50113295 -51267226 - L2 LINE L2 -3 3310 3203 226 255 21 96 chr15 50114257 50114351 -51266170 + L2 LINE L2 3186 3272 0 779 293 11 5 chr15 50114381 50114572 -51265949 + MIR SINE MIR 2 193 -69 302 360 7 39 chr15 50114824 50114977 -51265544 + L2 LINE L2 2966 3113 -159 310 221 26 26 chr15 50115488 50115601 -51264920 - Charlie7 DNA MER1_type -57 2555 2443 526 63 25 0 chr15 50115603 50115682 -51264839 + (CA)n Simple_repeat Simple_repeat 2 82 0 565 299 149 10 chr15 50115720 50116008 -51264513 - Charlie7 DNA MER1_type -2135 477 150 261 290 93 9 chr15 50116063 50116170 -51264351 + L2 LINE L2 2720 2835 -479 320 321 69 8 chr15 50117285 50117416 -51263105 + MIR SINE MIR 7 145 -117 1564 180 0 0 chr15 50117484 50117739 -51262782 + AluJb SINE Alu 48 302 -10 25 51 0 0 chr15 50117801 50117840 -51262681 + AT_rich Low_complexity Low_complexity 1 39 0 937 189 0 75 chr15 50118537 50118738 -51261783 + AluJb SINE Alu 84 269 -43 546 187 0 9 chr15 50119250 50119357 -51261164 - FLAM_A SINE Alu -16 126 21 353 210 0 0 chr15 50120847 50120909 -51259612 + Tigger5 DNA MER2_type 2256 2317 -6 326 241 13 13 chr15 50120910 50120989 -51259532 - Tigger5 DNA MER2_type -2243 80 2 256 135 0 0 chr15 50121474 50121511 -51259010 - tRNA-Gln-CAA tRNA tRNA -37 38 2 187 240 164 48 chr15 50121823 50121927 -51258594 - MIR3 SINE MIR -29 179 64 1226 155 0 0 chr15 50122882 50123069 -51257452 + AluSg/x SINE Alu 81 267 -45 22 56 0 0 chr15 50123759 50123795 -51256726 + AT_rich Low_complexity Low_complexity 1 36 0 19277 166 18 6 chr15 50125023 50126521 -51254000 + L1PA12 LINE L1 1690 3170 -2998 189 0 0 0 chr15 50126521 50126542 -51253979 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 19277 166 18 6 chr15 50126542 50129332 -51251189 + L1PA12 LINE L1 3170 6023 -145 2021 114 0 0 chr15 50129842 50130106 -51250415 + AluSx SINE Alu 4 267 -45 258 366 9 9 chr15 50130208 50130320 -51250201 - MIR SINE MIR -65 143 32 747 320 87 41 chr15 50130671 50131180 -51249341 - L2 LINE L2 0 3313 2778 6739 132 19 16 chr15 50131780 50132972 -51247549 + L1MA2 LINE L1 4746 5949 -355 1802 161 7 11 chr15 50132972 50133296 -51247225 + AluJb SINE Alu 1 323 0 6739 132 19 16 chr15 50133296 50133653 -51246868 + L1MA2 LINE L1 5949 6304 0 481 254 11 79 chr15 50134141 50134330 -51246191 - MER5B DNA MER1_type -1 177 2 225 0 0 0 chr15 50134343 50134368 -51246153 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr15 50135072 50135100 -51245421 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr15 50135997 50136017 -51244504 + (CAA)n Simple_repeat Simple_repeat 2 21 0 494 305 63 27 chr15 50136133 50136356 -51244165 + MIR SINE MIR 10 240 -22 331 297 21 76 chr15 50136511 50136656 -51243865 - MIR SINE MIR -115 147 11 1614 271 62 75 chr15 50136692 50137642 -51242879 - L2 LINE L2 0 3313 2371 405 303 52 32 chr15 50137903 50138058 -51242463 - MIR3 SINE MIR -6 202 45 444 207 0 0 chr15 50139250 50139337 -51241184 - MIR3 SINE MIR -45 163 77 297 118 0 0 chr15 50139584 50139635 -51240886 + (TATG)n Simple_repeat Simple_repeat 2 52 0 217 191 0 0 chr15 50139666 50139713 -51240808 + L2 LINE L2 3267 3313 0 404 243 104 58 chr15 50141319 50141578 -51238943 + L2 LINE L2 3041 3311 -2 230 260 0 13 chr15 50141696 50141773 -51238748 + (TA)n Simple_repeat Simple_repeat 1 76 0 28 0 0 0 chr15 50142069 50142097 -51238424 + AT_rich Low_complexity Low_complexity 1 28 0 465 236 68 94 chr15 50142249 50142558 -51237963 + L1ME3A LINE L1 5851 6151 -19 264 232 0 0 chr15 50142960 50143029 -51237492 - L1M4 LINE L1 -2900 3246 3178 306 332 107 21 chr15 50143066 50143253 -51237268 - HAL1 LINE L1 -924 1583 1381 655 317 116 49 chr15 50143401 50143769 -51236752 - L1MEd LINE L1 -5042 1077 735 267 31 0 0 chr15 50143769 50143801 -51236720 + (TG)n Simple_repeat Simple_repeat 1 32 0 655 317 116 49 chr15 50143801 50144346 -51236175 - L1MEd LINE L1 -5384 735 103 677 293 40 7 chr15 50144469 50144766 -51235755 + L1ME LINE L1 5485 5791 -330 28 0 0 0 chr15 50144824 50144852 -51235669 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr15 50144879 50144914 -51235607 + AT_rich Low_complexity Low_complexity 1 35 0 4833 135 34 23 chr15 50144982 50146300 -51234221 + L1PB1 LINE L1 4821 6147 -4 6022 99 8 9 chr15 50146311 50147281 -51233240 + L1PA10 LINE L1 5175 6143 -25 255 31 0 0 chr15 50147281 50147313 -51233208 + (CTAAA)n Simple_repeat Simple_repeat 4 35 0 4679 119 54 84 chr15 50147641 50148607 -51231914 - L1PA16 LINE L1 -4 6162 5224 5943 75 5 3 chr15 50150588 50151366 -51229155 - LTR17 LTR ERV1 0 780 1 206 307 102 11 chr15 50151581 50151669 -51228852 - MIR SINE MIR -131 131 36 31 0 0 0 chr15 50151709 50151740 -51228781 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr15 50152375 50152418 -51228103 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr15 50153317 50153347 -51227174 + AT_rich Low_complexity Low_complexity 1 30 0 369 58 0 0 chr15 50153690 50153742 -51226779 + (GA)n Simple_repeat Simple_repeat 1 52 0 25 0 0 0 chr15 50154051 50154076 -51226445 + AT_rich Low_complexity Low_complexity 1 25 0 777 257 35 63 chr15 50154144 50154459 -51226062 + L1M4 LINE L1 101 406 -6136 308 169 0 0 chr15 50154454 50154513 -51226008 + L1M4 LINE L1 3333 3391 -3253 * 3703 244 15 14 chr15 50154515 50155551 -51224970 + L1M4 LINE L1 3781 4817 -1827 2254 134 69 27 chr15 50155552 50155956 -51224565 + MSTA LTR MaLR 1 421 -7 8864 181 17 10 chr15 50155959 50157599 -51222922 + MSTA-int LTR MaLR 1 1651 0 1950 160 70 13 chr15 50157599 50157987 -51222534 + MSTA LTR MaLR 1 410 -18 754 259 45 28 chr15 50158661 50158908 -51221613 + L1MDa LINE L1 62 312 -6228 1347 145 47 0 chr15 50158908 50159122 -51221399 + MER30 DNA MER1_type 1 224 -6 449 294 38 68 chr15 50159342 50159577 -51220944 + L1MDa LINE L1 306 533 -6007 1161 232 36 17 chr15 50160284 50160586 -51219935 + L1PA16 LINE L1 5858 6165 -1 855 131 0 0 chr15 50161126 50161256 -51219265 + L1PA16 LINE L1 6036 6165 -1 26 0 0 0 chr15 50161836 50161862 -51218659 + AT_rich Low_complexity Low_complexity 1 26 0 306 299 72 54 chr15 50162019 50162240 -51218281 - MIR SINE MIR -17 245 21 1245 206 112 9 chr15 50162254 50162594 -51217927 - L1MB8 LINE L1 0 6178 5804 186 43 0 0 chr15 50163973 50163996 -51216525 + (T)n Simple_repeat Simple_repeat 1 23 0 1878 106 23 0 chr15 50164117 50164373 -51216148 + AluSq SINE Alu 1 262 -51 256 337 31 41 chr15 50164623 50164721 -51215800 - L2 LINE L2 -27 3245 3149 674 130 165 0 chr15 50164746 50164861 -51215660 + AluJo SINE Alu 3 136 -176 281 209 0 22 chr15 50164874 50164965 -51215556 + (TTTA)n Simple_repeat Simple_repeat 4 92 0 34 0 0 0 chr15 50164969 50165003 -51215518 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr15 50166118 50166139 -51214382 + AT_rich Low_complexity Low_complexity 1 21 0 474 305 120 78 chr15 50166179 50167369 -51213152 - L1 LINE L1 -773 5373 4134 277 289 19 0 chr15 50167713 50167817 -51212704 + L1MC4a LINE L1 5824 5929 -1879 246 265 34 86 chr15 50168573 50168690 -51211831 + L3b LINE CR1 1198 1308 -275 180 111 0 0 chr15 50168696 50168723 -51211798 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 207 139 0 0 chr15 50169115 50169151 -51211370 + (TG)n Simple_repeat Simple_repeat 2 37 0 182 213 43 0 chr15 50169190 50169237 -51211284 - L3 LINE CR1 -1163 414 366 630 233 8 0 chr15 50171281 50171414 -51209107 + MER94 DNA DNA 1 134 0 498 242 37 37 chr15 50173030 50173191 -51207330 + MLT1I LTR MaLR 241 401 -8 234 283 17 17 chr15 50173308 50173368 -51207153 - MIR SINE MIR -133 75 16 937 249 4 9 chr15 50174518 50174743 -51205778 + MER58A DNA MER1_type 1 224 0 4546 158 39 18 chr15 50174961 50175838 -51204683 + L1MB1 LINE L1 5273 6167 -1 184 327 0 0 chr15 50176015 50176067 -51204454 + L2 LINE L2 2987 3038 -234 197 0 0 67 chr15 50176180 50176210 -51204311 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 714 338 94 25 chr15 50176229 50176900 -51203621 + L2 LINE L2 2599 3312 -1 2037 117 4 4 chr15 50177038 50177346 -51203175 - AluSx SINE Alu 0 310 3 461 83 0 0 chr15 50177372 50177432 -51203089 + U2 snRNA snRNA 1 60 -128 290 309 29 86 chr15 50178611 50178750 -51201771 - L2 LINE L2 -5 3267 3137 23 0 0 0 chr15 50179277 50179300 -51201221 + AT_rich Low_complexity Low_complexity 1 23 0 2259 119 0 0 chr15 50180344 50180656 -51199865 + AluSx SINE Alu 1 312 0 2153 102 28 0 chr15 50181103 50181386 -51199135 - AluSg SINE Alu -19 291 1 2343 103 0 0 chr15 50182378 50182689 -51197832 + AluY SINE Alu 1 311 0 31 68 0 0 chr15 50185408 50185467 -51195054 + AT_rich Low_complexity Low_complexity 1 59 0 32 86 0 0 chr15 50185584 50185665 -51194856 + AT_rich Low_complexity Low_complexity 1 81 0 746 246 37 21 chr15 50186383 50186574 -51193947 + MER58A DNA MER1_type 7 200 -24 1878 179 99 8 chr15 50186585 50186970 -51193551 - MSTB1 LTR MaLR -12 420 1 693 187 26 0 chr15 50187012 50187167 -51193354 - MER3 DNA MER1_type 0 2585 2427 383 244 0 0 chr15 50187162 50187240 -51193281 - MER3 DNA MER1_type -92 117 40 * 208 370 29 59 chr15 50187494 50187767 -51192754 - L3b LINE CR1 -205 1378 1114 1039 247 4 20 chr15 50188179 50188430 -51192091 + AluJo SINE Alu 4 250 -62 243 0 0 0 chr15 50188485 50188512 -51192009 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 203 233 0 0 chr15 50188661 50188704 -51191817 + L3 LINE CR1 995 1037 -540 243 317 97 9 chr15 50190046 50190273 -51190248 + L1ME LINE L1 5616 5862 -259 1910 152 0 7 chr15 50192463 50192760 -51187761 + AluJb SINE Alu 1 295 -17 225 268 24 114 chr15 50193328 50193451 -51187070 - L2 LINE L2 -1 3271 3160 16013 48 0 7 chr15 50193970 50196464 -51184057 - L1PA3 LINE L1 -215 5940 3475 1035 220 110 9 chr15 50196606 50196933 -51183588 + L1MC3 LINE L1 7039 7398 -387 * 1289 164 4 28 chr15 50196920 50197189 -51183332 + L1MC1 LINE L1 5672 5824 -332 418 324 0 0 chr15 50198062 50198235 -51182286 + T-rich Low_complexity Low_complexity 1 173 0 757 233 0 12 chr15 50198339 50198502 -51182019 + LTR41 LTR ERVL 1 161 -612 1712 158 4 11 chr15 50198536 50198815 -51181706 + AluJb SINE Alu 23 299 -13 722 129 41 0 chr15 50198818 50198965 -51181556 + GA-rich Low_complexity Low_complexity 4 156 0 950 262 82 77 chr15 50199060 50199488 -51181033 + LTR41 LTR ERVL 337 766 -7 33 66 0 0 chr15 50200036 50200097 -51180424 + AT_rich Low_complexity Low_complexity 1 61 0 1031 210 39 9 chr15 50200447 50200676 -51179845 + MIR SINE MIR 6 241 -21 378 245 170 13 chr15 50201179 50201338 -51179183 + L2 LINE L2 2990 3173 -140 312 240 25 0 chr15 50201784 50201905 -51178616 + GA-rich Low_complexity Low_complexity 2 125 0 193 276 13 40 chr15 50202126 50202202 -51178319 - L2 LINE L2 -1039 2275 2202 1632 160 40 14 chr15 50202743 50203044 -51177477 + AluJb SINE Alu 1 308 0 2289 91 0 3 chr15 50203598 50203895 -51176626 + AluSq SINE Alu 1 296 -17 2031 85 4 4 chr15 50204988 50205247 -51175274 + AluSc SINE Alu 36 294 -15 24 0 0 0 chr15 50205481 50205505 -51175016 + AT_rich Low_complexity Low_complexity 1 24 0 2041 212 85 30 chr15 50206190 50206719 -51173802 + MLT1E2 LTR MaLR 69 626 0 2317 78 7 0 chr15 50206813 50207106 -51173415 - AluY SINE Alu -16 295 1 2095 114 99 6 chr15 50207329 50207662 -51172859 + THE1B LTR MaLR 1 364 0 224 213 0 0 chr15 50207694 50207741 -51172780 + (CAT)n Simple_repeat Simple_repeat 3 49 0 3084 158 6 9 chr15 50208682 50209212 -51171309 + L1MB3 LINE L1 5634 6161 -22 712 256 87 40 chr15 50209667 50209988 -51170533 - MER46C DNA MER2_type -1 337 2 1307 143 390 3 chr15 50212434 50212742 -51167779 - THE1C-int LTR MaLR -1150 430 4 1617 189 48 38 chr15 50212745 50213116 -51167405 - THE1C LTR MaLR 0 375 1 1283 171 27 0 chr15 50213116 50213373 -51167148 + L1MA4A LINE L1 6035 6298 -5 418 242 59 20 chr15 50213795 50213948 -51166573 - Charlie4 DNA MER1_type 0 1961 1803 42185 38 21 1 chr15 50214087 50220117 -51160404 + L1PA3 LINE L1 4 6155 0 3478 187 29 43 chr15 50220162 50220958 -51159563 - L1MB5 LINE L1 -3 6171 5387 1735 182 0 4 chr15 50220958 50221238 -51159283 - AluJb SINE Alu -33 279 1 620 264 25 0 chr15 50221253 50221450 -51159071 - L1MB5 LINE L1 -830 5316 5115 441 95 0 0 chr15 50221485 50221548 -51158973 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 209 362 78 21 chr15 50221567 50221708 -51158813 - MIR SINE MIR -51 211 63 518 321 0 0 chr15 50221802 50221936 -51158585 - L2 LINE L2 0 3313 3180 224 350 29 19 chr15 50222363 50222466 -51158055 - MIR SINE MIR -149 113 10 258 239 79 14 chr15 50225010 50225146 -51155375 + MIR3 SINE MIR 14 154 -63 1087 207 9 14 chr15 50225251 50225473 -51155048 + MER58A DNA MER1_type 1 221 -3 229 274 94 43 chr15 50227641 50227758 -51152763 + LTR33 LTR ERVL 37 159 -362 832 205 13 64 chr15 50227858 50228092 -51152429 + LTR33 LTR ERVL 296 517 -4 1503 50 0 6 chr15 50228192 50228373 -51152148 - AluY SINE Alu -19 292 113 537 259 135 10 chr15 50228811 50229004 -51151517 - MIR SINE MIR 0 262 46 313 272 88 32 chr15 50229110 50229235 -51151286 + MIR SINE MIR 61 192 -70 1402 185 29 22 chr15 50231902 50232178 -51148343 + AluJo SINE Alu 2 279 -33 303 28 0 0 chr15 50232200 50232236 -51148285 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr15 50233513 50233534 -51146987 + AT_rich Low_complexity Low_complexity 1 21 0 956 298 109 65 chr15 50233567 50234785 -51145736 - L1M4 LINE L1 -766 5380 4109 277 289 19 0 chr15 50235108 50235212 -51145309 + L1MC4a LINE L1 5824 5929 -1879 246 265 34 86 chr15 50235968 50236085 -51144436 + L3b LINE CR1 1198 1308 -275 180 111 0 0 chr15 50236091 50236118 -51144403 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 182 213 43 0 chr15 50236571 50236618 -51143903 - L3 LINE CR1 -1163 414 366 630 233 8 0 chr15 50238664 50238797 -51141724 + MER94 DNA DNA 1 134 0 496 242 37 37 chr15 50240413 50240574 -51139947 + MLT1I LTR MaLR 241 401 -8 207 279 16 33 chr15 50240691 50240752 -51139769 - MIR SINE MIR -133 75 16 1192 15 0 15 chr15 50241679 50241816 -51138705 + AluYa5 SINE Alu 1 135 -176 980 240 4 9 chr15 50242039 50242264 -51138257 + MER58A DNA MER1_type 1 224 0 4516 160 39 18 chr15 50242482 50243359 -51137162 + L1MB1 LINE L1 5273 6167 -1 197 0 0 67 chr15 50243702 50243732 -51136789 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 207 0 0 0 chr15 50243812 50243835 -51136686 + (T)n Simple_repeat Simple_repeat 1 23 0 713 333 101 19 chr15 50243835 50244429 -51136092 + L2 LINE L2 2671 3312 -1 2037 117 4 4 chr15 50244567 50244875 -51135646 - AluSx SINE Alu 0 310 3 461 83 0 0 chr15 50244901 50244961 -51135560 + U2 snRNA snRNA 1 60 -128 290 309 29 86 chr15 50246140 50246279 -51134242 - L2 LINE L2 -5 3267 3137 23 0 0 0 chr15 50246806 50246829 -51133692 + AT_rich Low_complexity Low_complexity 1 23 0 2186 128 0 0 chr15 50247873 50248179 -51132342 + AluSx SINE Alu 1 306 -6 2133 109 28 0 chr15 50248627 50248912 -51131609 - AluSx SINE Alu -19 293 1 2212 51 44 4 chr15 50250313 50250587 -51129934 - AluY SINE Alu -15 296 12 227 229 36 60 chr15 50250646 50250729 -51129792 + L2 LINE L2 3229 3309 -4 454 222 40 0 chr15 50250818 50250917 -51129604 + MIR SINE MIR 98 200 -62 332 310 0 20 chr15 50251061 50251161 -51129360 + L2 LINE L2 3182 3279 -34 224 204 140 65 chr15 50251635 50251728 -51128793 - MIR3 SINE MIR -3 205 106 2072 118 10 7 chr15 50251734 50252030 -51128491 - AluSx SINE Alu -15 297 1 217 277 0 0 chr15 50252030 50252077 -51128444 + L3 LINE CR1 1524 1570 -7 2532 50 3 0 chr15 50253697 50253997 -51126524 + AluY SINE Alu 1 301 -10 309 282 24 0 chr15 50254652 50254737 -51125784 + L2 LINE L2 3180 3266 -6 295 341 68 0 chr15 50255129 50255261 -51125260 + MIR SINE MIR 110 250 -12 625 117 51 44 chr15 50255519 50255656 -51124865 + MER53 DNA DNA 1 138 -51 301 143 86 0 chr15 50255650 50255720 -51124801 + MER53 DNA DNA 98 173 -16 * 377 303 28 7 chr15 50255760 50255905 -51124616 - MIR3 SINE MIR -31 177 30 367 258 22 22 chr15 50256507 50256596 -51123925 + MIR SINE MIR 3 91 -171 209 250 0 0 chr15 50256897 50256941 -51123580 - MIR SINE MIR -92 116 73 277 277 53 11 chr15 50258059 50258153 -51122368 - L2 LINE L2 -8 3305 3208 297 266 89 40 chr15 50258891 50259015 -51121506 - L2 LINE L2 -4 3309 3180 13586 125 29 69 chr15 50259146 50261132 -51119389 + Tigger1 DNA MER2_type 24 2020 -398 728 175 24 16 chr15 50261132 50261258 -51119263 + FLAM_A SINE Alu 2 128 -14 13586 125 29 69 chr15 50261258 50261642 -51118879 + Tigger1 DNA MER2_type 2020 2418 0 532 245 172 20 chr15 50261783 50261987 -51118534 + MIR SINE MIR 27 261 -1 2417 176 17 11 chr15 50262237 50262698 -51117823 + MLT1C LTR MaLR 4 467 0 230 291 0 0 chr15 50263765 50263820 -51116701 - L2 LINE L2 -8 3264 3210 258 81 0 0 chr15 50264056 50264093 -51116428 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 28 29 0 0 chr15 50265389 50265424 -51115097 + AT_rich Low_complexity Low_complexity 1 35 0 284 353 68 34 chr15 50265587 50265822 -51114699 - L2 LINE L2 -1 3271 3029 362 266 84 59 chr15 50266048 50266086 -51114435 - L3 LINE CR1 -578 999 963 2103 110 73 17 chr15 50266086 50266441 -51114080 + THE1C LTR MaLR 1 375 0 362 266 84 59 chr15 50266441 50266605 -51113916 - L3 LINE CR1 -614 963 792 398 326 137 17 chr15 50266650 50266883 -51113638 - MIR SINE MIR 0 262 2 2062 124 0 13 chr15 50267343 50267669 -51112852 + AluSx SINE Alu 1 312 0 270 0 0 0 chr15 50267980 50268010 -51112511 + (TC)n Simple_repeat Simple_repeat 1 30 0 1596 171 31 27 chr15 50268010 50268303 -51112218 - AluJb SINE Alu -18 294 1 21 0 0 0 chr15 50268378 50268399 -51112122 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr15 50268769 50268800 -51111721 + GC_rich Low_complexity Low_complexity 1 31 0 36 23 0 0 chr15 50269183 50269226 -51111295 + AT_rich Low_complexity Low_complexity 1 43 0 254 29 29 0 chr15 50269707 50269742 -51110779 + (CCCCG)n Simple_repeat Simple_repeat 5 40 0 210 71 0 0 chr15 50269838 50269866 -51110655 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 4902 94 15 17 chr15 50270031 50270785 -51109736 - L1MA3 LINE L1 0 6305 5554 2518 108 0 24 chr15 50270786 50270843 -51109678 + L1M1 LINE L1 5275 5332 -972 1925 180 0 0 chr15 50270843 50271149 -51109372 + AluSx SINE Alu 1 306 -6 2518 108 0 24 chr15 50271149 50271506 -51109015 + L1M1 LINE L1 5332 5679 -625 1579 185 26 13 chr15 50271550 50271853 -51108668 + AluJo SINE Alu 6 312 0 246 222 202 20 chr15 50272377 50272476 -51108045 + L2 LINE L2 3104 3220 -93 212 269 51 26 chr15 50272722 50272800 -51107721 + MIR SINE MIR 45 124 -84 422 221 171 0 chr15 50272802 50272960 -51107561 - ORSL DNA AcHobo 0 275 91 2307 219 11 48 chr15 50272961 50273622 -51106899 + MER92B LTR ERV1 1 636 0 248 217 96 12 chr15 50273625 50273708 -51106813 - ORSL DNA AcHobo -185 90 1 204 232 71 18 chr15 50273708 50273764 -51106757 + MIR3 SINE MIR 119 177 -31 620 171 0 0 chr15 50274220 50274325 -51106196 + U6 snRNA snRNA 1 105 -2 25 31 0 0 chr15 50274395 50274427 -51106094 + AT_rich Low_complexity Low_complexity 1 32 0 265 257 62 9 chr15 50274558 50274671 -51105850 - L1ME4a LINE L1 -219 5902 5784 353 280 67 7 chr15 50274748 50274898 -51105623 - L1ME4a LINE L1 -456 5665 5507 223 254 104 15 chr15 50274940 50275007 -51105514 + L2 LINE L2 3127 3199 -73 1678 237 102 29 chr15 50276339 50276866 -51103655 + MLT1F1 LTR MaLR 2 567 0 553 272 83 58 chr15 50277210 50277523 -51102998 + LTR67 LTR ERVL 237 557 0 233 337 47 23 chr15 50277528 50277614 -51102907 - MIR SINE MIR -117 145 58 607 307 86 54 chr15 50278125 50278532 -51101989 + HAL1 LINE L1 534 953 -1554 4738 161 34 13 chr15 50278568 50279403 -51101118 + L1MA8 LINE L1 5184 6040 -251 4325 110 13 0 chr15 50279403 50280030 -51100491 - MER41B LTR ERV1 0 635 1 4738 161 34 13 chr15 50280030 50280284 -51100237 + L1MA8 LINE L1 6040 6287 -4 1985 242 70 23 chr15 50280296 50280531 -51099990 + L1ME1 LINE L1 4623 4846 -1320 469 16 0 0 chr15 50280531 50280593 -51099928 - L1PA3 LINE L1 0 6155 6094 1985 242 70 23 chr15 50280593 50281581 -51098940 + L1ME1 LINE L1 4846 5908 -258 347 281 9 0 chr15 50281608 50281722 -51098799 + L1ME1 LINE L1 6030 6144 -22 388 35 35 0 chr15 50282283 50282341 -51098180 + (TC)n Simple_repeat Simple_repeat 1 60 0 870 278 104 35 chr15 50282740 50283259 -51097262 + HAL1 LINE L1 1397 1951 -556 2306 96 0 0 chr15 50283431 50283733 -51096788 + AluSx SINE Alu 1 302 -10 219 69 0 0 chr15 50283735 50283764 -51096757 + (TA)n Simple_repeat Simple_repeat 2 30 0 659 280 102 36 chr15 50283804 50284168 -51096353 + LTR67 LTR ERVL 3 390 -167 235 210 16 0 chr15 50284205 50284267 -51096254 + LTR67 LTR ERVL 480 542 -15 241 329 92 24 chr15 50284504 50284668 -51095853 - MIR3 SINE MIR -31 177 3 355 322 41 20 chr15 50286660 50286806 -51093715 + L2 LINE L2 3164 3312 -1 23 33 0 0 chr15 50286945 50286975 -51093546 + AT_rich Low_complexity Low_complexity 1 30 0 202 329 27 0 chr15 50286989 50287062 -51093459 + CT-rich Low_complexity Low_complexity 3 77 0 * 213 250 0 0 chr15 50287023 50287071 -51093450 + T-rich Low_complexity Low_complexity 1 48 0 407 204 12 1 chr15 50287387 50287486 -51093035 + MLT1H1 LTR MaLR 1 103 -465 323 164 0 0 chr15 50287689 50287756 -51092765 + L1MA3 LINE L1 6239 6305 0 226 247 0 27 chr15 50287764 50287837 -51092684 + MLT-int LTR MaLR 22 92 -1643 216 306 56 28 chr15 50287879 50287951 -51092570 + L2 LINE L2 3199 3272 0 1293 134 5 0 chr15 50288030 50288232 -51092289 - THE1B LTR MaLR 0 364 162 7528 129 11 39 chr15 50288232 50289537 -51090984 - THE1B-int LTR MaLR -312 1268 1 2589 89 3 16 chr15 50289537 50289607 -51090914 - THE1B LTR MaLR 0 364 295 2351 130 5 19 chr15 50289607 50289976 -51090545 + THE1B LTR MaLR 1 364 0 2589 89 3 16 chr15 50289976 50290274 -51090247 - THE1B LTR MaLR -69 295 1 1610 112 23 8 chr15 50290274 50290532 -51089989 - THE1C LTR MaLR -113 262 1 9318 129 37 38 chr15 50290532 50292112 -51088409 - THE1C-int LTR MaLR 0 1580 3 2780 93 3 5 chr15 50292114 50292490 -51088031 - THE1C LTR MaLR 0 375 1 359 336 35 13 chr15 50292653 50292882 -51087639 + L1ME LINE L1 5482 5715 -406 1674 181 25 3 chr15 50292920 50293246 -51087275 - L1PA16 LINE L1 -24 6142 5810 21 0 0 0 chr15 50293259 50293280 -51087241 + AT_rich Low_complexity Low_complexity 1 21 0 342 336 83 31 chr15 50293637 50293778 -51086743 - L2 LINE L2 -469 2845 2713 2271 133 14 8 chr15 50293778 50294140 -51086381 - THE1B LTR MaLR 0 364 1 9984 119 47 3 chr15 50294140 50295653 -51084868 - THE1B-int LTR MaLR 0 1580 1 2676 113 3 0 chr15 50295653 50296016 -51084505 - THE1B LTR MaLR 0 364 1 342 336 83 31 chr15 50296016 50296101 -51084420 - L2 LINE L2 -600 2714 2605 463 314 41 35 chr15 50296336 50296532 -51083989 - MIR SINE MIR -58 150 6 748 301 35 13 chr15 50296662 50296891 -51083630 + MIR SINE MIR 5 238 -24 342 199 22 88 chr15 50296900 50297002 -51083519 - MIR SINE MIR -63 145 61 189 0 0 0 chr15 50297154 50297175 -51083346 + (TAA)n Simple_repeat Simple_repeat 3 23 0 183 250 191 15 chr15 50297834 50297902 -51082619 - L2 LINE L2 -2 3311 3232 191 341 65 72 chr15 50299191 50299484 -51081037 - L2 LINE L2 -6 3266 2976 751 62 0 54 chr15 50299490 50299602 -51080919 + AluY SINE Alu 206 311 0 637 254 142 37 chr15 50300855 50301334 -51079187 - MLT1F1 LTR MaLR -9 533 11 181 269 0 97 chr15 50301395 50301488 -51079033 - L2 LINE L2 -1876 1438 1355 419 262 171 37 chr15 50301557 50301631 -51078890 + MER5A DNA MER1_type 4 67 -122 4535 70 10 3 chr15 50301631 50302214 -51078307 - LTR14C LTR ERVK 0 587 1 419 262 171 37 chr15 50302214 50302303 -51078218 + MER5A DNA MER1_type 67 189 0 1358 175 3 95 chr15 50302568 50302883 -51077638 + AluJo SINE Alu 1 286 -26 1012 262 17 60 chr15 50303290 50303809 -51076712 + L1MC5 LINE L1 6737 7233 -728 279 264 115 16 chr15 50303899 50304081 -51076440 + L1MC5 LINE L1 7235 7434 -527 2006 156 3 10 chr15 50304107 50304421 -51076100 - AluJb SINE Alu 0 312 1 1612 261 33 65 chr15 50304519 50305212 -51075309 + L1MCb LINE L1 3 673 -5372 3176 273 32 27 chr15 50305260 50307343 -51073178 + L1MCb LINE L1 1710 3761 -2803 510 171 111 0 chr15 50307362 50307441 -51073080 + L1MA9 LINE L1 18 115 -7450 248 0 31 0 chr15 50307441 50307473 -51073048 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 510 171 111 0 chr15 50307473 50307510 -51073011 + L1MA9 LINE L1 115 147 -7418 1475 227 26 26 chr15 50307514 50307901 -51072620 + L1MA9 LINE L1 364 750 -6815 4988 184 18 1 chr15 50307905 50308967 -51071554 + L1MA9 LINE L1 4227 5306 -2259 482 127 0 0 chr15 50309081 50309160 -51071361 - L1MA1 LINE L1 -105 6197 6119 2431 137 2 14 chr15 50309171 50309601 -51070920 + L1MCb LINE L1 4313 4737 -1827 1707 78 30 7 chr15 50309600 50309869 -51070652 + L1MA1 LINE L1 5923 6197 -105 * 2251 245 46 39 chr15 50309867 50310773 -51069748 + L1M4 LINE L1 3328 4240 -1906 4937 141 22 13 chr15 50310888 50311810 -51068711 + L1MA9 LINE L1 6801 7730 -1 332 250 76 62 chr15 50311932 50312076 -51068445 + MLT1D LTR MaLR 265 410 -95 1793 131 3 62 chr15 50312200 50312491 -51068030 - AluSp SINE Alu -39 274 1 5051 179 38 44 chr15 50312492 50313610 -51066911 + L1MC3 LINE L1 5790 6900 -885 1057 235 103 62 chr15 50313610 50313772 -51066749 + MLT1D LTR MaLR 1 155 -350 2091 134 3 0 chr15 50313772 50314079 -51066442 - AluSx SINE Alu -4 308 1 1057 235 103 62 chr15 50314079 50314401 -51066120 + MLT1D LTR MaLR 155 505 0 1285 126 198 159 chr15 50314401 50314601 -51065920 + L1MC3 LINE L1 6896 7087 -698 259 263 26 13 chr15 50314601 50314677 -51065844 + MLT1F1 LTR MaLR 35 111 -456 1285 126 198 159 chr15 50314677 50314885 -51065636 + L1MC3 LINE L1 7087 7398 -387 * 1289 164 4 28 chr15 50314872 50315141 -51065380 + L1MC1 LINE L1 5672 5824 -332 7609 32 0 0 chr15 50315845 50317194 -51063327 + L1PA3 LINE L1 4806 6154 -1 25 0 0 0 chr15 50317195 50317220 -51063301 + AT_rich Low_complexity Low_complexity 1 25 0 591 146 27 27 chr15 50317238 50317348 -51063173 + L1MC3 LINE L1 7393 7502 -283 393 342 115 33 chr15 50317545 50317875 -51062646 - L1ME LINE L1 -5520 550 194 281 303 15 0 chr15 50317925 50317991 -51062530 - MIR SINE MIR -184 78 12 376 340 7 43 chr15 50318175 50318316 -51062205 + MIR3 SINE MIR 20 155 -53 266 274 0 27 chr15 50318621 50318694 -51061827 + LTR67 LTR ERVL 95 165 -392 271 330 120 31 chr15 50319321 50319512 -51061009 + L2 LINE L2 2293 2500 -814 461 293 33 33 chr15 50319811 50319992 -51060529 + MIR SINE MIR 58 238 -24 277 239 18 62 chr15 50320475 50320588 -51059933 + L1MC/D LINE L1 5650 5757 -2051 2114 76 3 40 chr15 50320882 50321183 -51059338 - AluY SINE Alu 0 311 22 22 0 0 0 chr15 50321186 50321208 -51059313 + AT_rich Low_complexity Low_complexity 1 22 0 2006 130 3 3 chr15 50321846 50322138 -51058383 - AluSx SINE Alu -20 292 1 564 300 108 9 chr15 50322670 50322702 -51057819 - MIR SINE MIR 0 262 235 186 43 0 0 chr15 50322702 50322725 -51057796 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 423 0 0 0 chr15 50322724 50322771 -51057750 + (TA)n Simple_repeat Simple_repeat 2 48 0 564 300 108 9 chr15 50322725 50322961 -51057560 - MIR SINE MIR -27 235 18 326 259 45 36 chr15 50323622 50323734 -51056787 - MIR SINE MIR -72 190 78 2514 51 0 0 chr15 50323816 50324108 -51056413 - AluY SINE Alu -19 292 1 691 266 27 76 chr15 50324575 50324838 -51055683 + MIR SINE MIR 3 252 -10 237 65 0 0 chr15 50325041 50325072 -51055449 + (CAT)n Simple_repeat Simple_repeat 3 33 0 423 237 88 0 chr15 50326747 50326861 -51053660 + L1MC4 LINE L1 7914 8037 -5 1986 114 4 0 chr15 50328676 50328948 -51051573 + AluSg SINE Alu 1 273 -37 630 26 0 0 chr15 50329441 50329517 -51051004 + (TTTTA)n Simple_repeat Simple_repeat 2 77 0 2093 100 0 24 chr15 50329521 50329812 -51050709 - AluSx SINE Alu -28 284 1 207 0 0 0 chr15 50330236 50330259 -51050262 + (TG)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr15 50330418 50330439 -51050082 + AT_rich Low_complexity Low_complexity 1 21 0 189 427 0 0 chr15 50331492 50331588 -51048933 + MIR3 SINE MIR 108 203 -5 664 209 65 39 chr15 50331732 50331885 -51048636 + FRAM SINE Alu 2 158 -18 21 36 0 0 chr15 50333254 50333282 -51047239 + AT_rich Low_complexity Low_complexity 1 28 0 1046 177 22 80 chr15 50333609 50333835 -51046686 + MER20 DNA MER1_type 2 214 -5 257 333 133 17 chr15 50334161 50334281 -51046240 - MER5B DNA MER1_type -4 174 41 321 293 70 83 chr15 50334316 50334473 -51046048 - MER5B DNA MER1_type 0 178 24 61 88 0 0 chr15 50334776 50334935 -51045586 + AT_rich Low_complexity Low_complexity 1 159 0 306 376 59 27 chr15 50335094 50335280 -51045241 - HAL1 LINE L1 -2315 192 1 219 328 166 15 chr15 50335287 50335619 -51044902 + L2 LINE L2 1993 2374 -940 738 294 0 0 chr15 50335718 50335898 -51044623 + MER5A DNA MER1_type 9 188 -1 25 51 0 0 chr15 50336012 50336051 -51044470 + AT_rich Low_complexity Low_complexity 1 39 0 23 78 0 0 chr15 50336155 50336206 -51044315 + AT_rich Low_complexity Low_complexity 1 51 0 461 290 83 44 chr15 50336497 50336904 -51043617 - L1MEc LINE L1 -4641 1755 1333 309 0 98 0 chr15 50338067 50338118 -51042403 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1943 112 0 4 chr15 50338123 50338390 -51042131 - AluSx SINE Alu -46 266 1 180 356 100 0 chr15 50338702 50338792 -51041729 + MIR3 SINE MIR 97 195 -13 3608 143 35 20 chr15 50339390 50339643 -51040878 + L1MA9 LINE L1 5536 5784 -528 1708 145 31 72 chr15 50339643 50340002 -51040519 + MER2 DNA MER2_type 1 344 0 3608 143 35 20 chr15 50340002 50340412 -51040109 + L1MA9 LINE L1 5784 6209 -103 316 137 20 0 chr15 50340412 50340463 -51040058 - MSTA LTR MaLR 0 428 377 1566 124 159 19 chr15 50340623 50340938 -51039583 - MSTA LTR MaLR -69 359 1 465 172 10 0 chr15 50340939 50341038 -51039483 + L1MA9 LINE L1 6206 6305 -7 4696 162 17 4 chr15 50341200 50342076 -51038445 + L1MC1 LINE L1 5185 6072 -261 1343 161 9 0 chr15 50342076 50342287 -51038234 + AluSg/x SINE Alu 82 294 -16 416 118 3 20 chr15 50342287 50342368 -51038153 + L1MC1 LINE L1 6068 6126 -207 321 154 0 0 chr15 50342381 50342433 -51038088 + L1MC4 LINE L1 6652 6703 -1339 229 95 0 0 chr15 50342449 50342491 -51038030 - LTR66 LTR ERVL -171 439 398 593 136 13 129 chr15 50342491 50342646 -51037875 + L1MC1 LINE L1 6195 6331 -2 1688 209 0 7 chr15 50342755 50343052 -51037469 + AluJb SINE Alu 1 295 -17 1098 113 0 0 chr15 50343237 50343378 -51037143 + AluSq/x SINE Alu 10 150 -163 456 114 0 25 chr15 50343378 50343457 -51037064 + Alu SINE Alu 233 309 -1 2271 125 11 19 chr15 50344251 50344618 -51035903 - THE1B LTR MaLR 0 364 1 444 275 7 0 chr15 50344664 50344785 -51035736 - MIR SINE MIR -53 155 31 227 339 29 98 chr15 50345224 50345634 -51034887 + L2 LINE L2 2365 2746 -568 2233 175 14 34 chr15 50345923 50346541 -51033980 + L1MB3 LINE L1 5393 5966 -217 225 279 16 16 chr15 50346561 50346622 -51033899 + L2 LINE L2 3126 3186 -86 729 260 59 0 chr15 50347598 50347802 -51032719 - MER20 DNA MER1_type -2 217 2 183 381 14 54 chr15 50347921 50348068 -51032453 + L2 LINE L2 3132 3272 0 26 0 0 0 chr15 50349893 50349919 -51030602 + AT_rich Low_complexity Low_complexity 1 26 0 229 355 159 0 chr15 50350752 50350890 -51029631 + L1MEd LINE L1 126 285 -5834 33 0 0 0 chr15 50351012 50351045 -51029476 + AT_rich Low_complexity Low_complexity 1 33 0 28 29 0 0 chr15 50351084 50351119 -51029402 + AT_rich Low_complexity Low_complexity 1 35 0 1786 151 11 0 chr15 50351216 50351487 -51029034 + AluSx SINE Alu 1 274 -38 317 202 170 0 chr15 50351494 50351588 -51028933 + L1M4 LINE L1 5477 5586 -598 * 571 195 14 87 chr15 50351583 50351815 -51028706 + L1MA10 LINE L1 5952 6329 -5 710 243 82 127 chr15 50351832 50352384 -51028137 + L1MEd LINE L1 622 1148 -4971 1408 245 90 26 chr15 50353041 50353204 -51027317 + L1MC4a LINE L1 6443 6594 -1214 405 0 0 0 chr15 50353204 50353249 -51027272 + (CA)n Simple_repeat Simple_repeat 2 46 0 1408 245 90 26 chr15 50353249 50353550 -51026971 + L1MC4a LINE L1 6594 6937 -871 418 298 92 51 chr15 50353555 50354751 -51025770 + L1MEd LINE L1 2136 3380 -2749 1525 140 7 55 chr15 50354779 50355099 -51025422 - AluSq SINE Alu 0 313 16 2269 43 43 4 chr15 50355810 50356087 -51024434 - AluY SINE Alu -12 299 12 193 276 13 40 chr15 50356637 50356713 -51023808 + L2 LINE L2 2202 2275 -1039 1402 119 78 11 chr15 50356924 50357192 -51023329 - AluY SINE Alu -14 297 12 188 253 36 60 chr15 50357251 50357334 -51023187 + L2 LINE L2 3229 3309 -4 454 222 40 0 chr15 50357423 50357522 -51022999 + MIR SINE MIR 98 200 -62 318 320 0 20 chr15 50357666 50357766 -51022755 + L2 LINE L2 3182 3279 -34 312 240 25 0 chr15 50358039 50358160 -51022361 + CT-rich Low_complexity Low_complexity 2 125 0 294 252 176 19 chr15 50358606 50358765 -51021756 - L2 LINE L2 -140 3173 2990 224 204 140 65 chr15 50359887 50359980 -51020541 - MIR3 SINE MIR -3 205 106 2072 118 10 7 chr15 50359986 50360282 -51020239 - AluSx SINE Alu -15 297 1 217 277 0 0 chr15 50360282 50360329 -51020192 + L3 LINE CR1 1524 1570 -7 548 188 0 21 chr15 50361874 50361970 -51018551 + FRAM SINE Alu 21 114 -62 315 0 0 0 chr15 50362025 50362060 -51018461 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 203 233 0 0 chr15 50362209 50362252 -51018269 + L3 LINE CR1 995 1037 -540 6292 29 0 0 chr15 50362855 50363619 -51016902 - L1HS LINE L1 -2303 3843 3080 * 13285 15 0 0 chr15 50363618 50365939 -51014582 + L1HS LINE L1 3835 6155 0 252 307 111 13 chr15 50366694 50366919 -51013602 + L1ME LINE L1 5616 5862 -259 1926 148 0 7 chr15 50369108 50369405 -51011116 + AluJb SINE Alu 1 295 -17 237 260 24 114 chr15 50369973 50370096 -51010425 - L2 LINE L2 -1 3271 3160 68 91 0 0 chr15 50370455 50370587 -51009934 + AT_rich Low_complexity Low_complexity 1 132 0 37 127 0 0 chr15 50370631 50370781 -51009740 + AT_rich Low_complexity Low_complexity 1 150 0 4086 31 90 4 chr15 50371556 50372068 -51008453 + LTR6B LTR ERV1 3 558 0 454 331 74 35 chr15 50372227 50372565 -51007956 + L2 LINE L2 2550 2900 -414 2037 100 18 4 chr15 50373150 50373430 -51007091 - AluSq SINE Alu -29 284 1 1034 151 73 19 chr15 50373452 50373658 -51006863 - L1PA16 LINE L1 -10 6156 5940 861 157 0 8 chr15 50374223 50374357 -51006164 + AluSg/x SINE Alu 134 266 -44 244 119 95 0 chr15 50374359 50374401 -51006120 + AluSg/x SINE Alu 241 286 -16 858 164 0 8 chr15 50374541 50374675 -51005846 + FLAM_C SINE Alu 1 133 0 1982 157 3 3 chr15 50374724 50375036 -51005485 - AluSx SINE Alu 0 312 1 1826 159 14 3 chr15 50375046 50375342 -51005179 - AluJo SINE Alu -13 299 1 252 0 0 0 chr15 50375390 50375418 -51005103 + (CTTG)n Simple_repeat Simple_repeat 1 28 0 4104 173 59 31 chr15 50375513 50376417 -51004104 - L1MA10 LINE L1 -38 6296 5368 1360 179 143 48 chr15 50376414 50376799 -51003722 + L1 LINE L1 4878 5312 -834 * 246 32 0 0 chr15 50376799 50376830 -51003691 + (CAA)n Simple_repeat Simple_repeat 1 31 0 1360 179 143 48 chr15 50376830 50376884 -51003637 + L1 LINE L1 5312 5359 -787 1110 146 0 0 chr15 50377412 50377583 -51002938 - AluSg/x SINE Alu -4 306 136 263 146 73 0 chr15 50377586 50377641 -51002880 + Charlie1 DNA MER1_type 2702 2760 -1 507 120 0 0 chr15 50378606 50378681 -51001840 - AluS SINE Alu -237 76 2 2932 202 59 10 chr15 50379068 50379745 -51000776 - MER67C LTR ERV1 0 710 1 4277 157 42 57 chr15 50380102 50381015 -50999506 - MER4D LTR ERV1 0 903 5 1652 304 57 48 chr15 50381192 50381986 -50998535 + L2 LINE L2 1994 2794 -520 29 0 0 0 chr15 50382068 50382097 -50998424 + AT_rich Low_complexity Low_complexity 1 29 0 438 216 39 52 chr15 50382125 50382278 -50998243 - Charlie2 DNA MER1_type -570 2292 2142 1026 239 123 28 chr15 50382309 50382707 -50997814 - Charlie2b DNA MER1_type -1196 1586 1151 3153 107 29 68 chr15 50382712 50383328 -50997193 + MER4B LTR ERV1 1 755 -24 2032 140 59 8 chr15 50383328 50383685 -50996836 - THE1C LTR MaLR 0 375 1 3153 107 29 68 chr15 50383685 50383706 -50996815 + MER4B LTR ERV1 755 775 -4 722 257 53 50 chr15 50383729 50384052 -50996469 - Charlie2b DNA MER1_type -1643 1139 816 1976 119 3 22 chr15 50384124 50384476 -50996045 - MER4A LTR ERV1 0 664 261 610 124 0 10 chr15 50384476 50384573 -50995948 - MER4A LTR ERV1 -566 98 3 15759 103 61 14 chr15 50384581 50387219 -50993302 - MER4A-int LTR ERV1 -2 6596 3837 607 141 37 61 chr15 50387201 50387364 -50993157 - MER4A-int LTR ERV1 -2905 3693 3535 * 28 48 0 0 chr15 50387601 50387643 -50992878 + AT_rich Low_complexity Low_complexity 1 42 0 683 283 20 20 chr15 50388072 50388270 -50992251 + MIR SINE MIR 8 205 -57 815 112 0 2 chr15 50388945 50389206 -50991315 + AluSx SINE Alu 1 310 0 242 231 0 0 chr15 50389307 50389359 -50991162 - L2 LINE L2 -15 3257 3206 1086 312 69 32 chr15 50389502 50390052 -50990469 - L2 LINE L2 -1 3312 2744 21 36 0 0 chr15 50390540 50390568 -50989953 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr15 50391212 50391232 -50989289 + (T)n Simple_repeat Simple_repeat 1 20 0 250 284 140 72 chr15 50391997 50392207 -50988314 + MER115 DNA AcHobo 302 526 -167 1815 175 101 45 chr15 50392207 50392671 -50987850 - LTR2B LTR ERV1 0 490 1 440 144 19 39 chr15 50392671 50392775 -50987746 + MER115 DNA AcHobo 523 624 -69 1208 241 7 13 chr15 50392781 50393080 -50987441 - L1MD2 LINE L1 -23 6336 6040 1278 162 45 121 chr15 50393107 50393746 -50986775 + MER4C LTR ERV1 2 465 0 31 44 0 0 chr15 50395060 50395105 -50985416 + AT_rich Low_complexity Low_complexity 1 45 0 487 281 115 31 chr15 50395197 50395546 -50984975 - L1ME4a LINE L1 -17 6173 5796 364 330 19 0 chr15 50395911 50396014 -50984507 - L2 LINE L2 -19 3253 3149 201 328 17 0 chr15 50396472 50396530 -50983991 + L2 LINE L2 3189 3247 -25 25 31 0 0 chr15 50397279 50397311 -50983210 + AT_rich Low_complexity Low_complexity 1 32 0 999 160 123 11 chr15 50397916 50398303 -50982218 + LTR54 LTR ERV1 1 504 -6 410 268 73 68 chr15 50398920 50399512 -50981009 - L1ME4a LINE L1 -1101 5114 4525 492 310 151 11 chr15 50399638 50400267 -50980254 - L1ME4a LINE L1 -2096 4119 3403 25 0 0 0 chr15 50400639 50400664 -50979857 + AT_rich Low_complexity Low_complexity 1 25 0 296 250 72 20 chr15 50400773 50400967 -50979554 - L1ME4a LINE L1 -3857 2358 2198 456 330 96 10 chr15 50402337 50402546 -50977975 - MIR SINE MIR -15 247 21 1053 329 70 21 chr15 50403592 50404103 -50976418 + MLT1K LTR MaLR 45 580 -8 22 85 0 12 chr15 50404124 50404148 -50976373 + AT_rich Low_complexity Low_complexity 1 24 -57 180 0 0 0 chr15 50404148 50404168 -50976353 + (TA)n Simple_repeat Simple_repeat 1 20 0 22 85 0 12 chr15 50404168 50404225 -50976296 + AT_rich Low_complexity Low_complexity 24 81 0 1541 172 0 76 chr15 50404412 50404714 -50975807 + AluJb SINE Alu 7 285 -27 1620 262 72 38 chr15 50405547 50406130 -50974391 - MER67B LTR ERV1 0 661 59 2199 107 7 3 chr15 50406293 50406591 -50973930 + AluSg SINE Alu 1 299 -11 228 235 39 0 chr15 50406813 50406864 -50973657 - L2 LINE L2 -6 3307 3255 2089 144 39 14 chr15 50407128 50407483 -50973038 + MER47A DNA MER2_type 2 365 -1 237 250 36 129 chr15 50407692 50407832 -50972689 + MIR SINE MIR 68 194 -68 2150 114 0 29 chr15 50408609 50408917 -50971604 - AluSq SINE Alu -14 299 1 228 336 92 38 chr15 50409092 50409223 -50971298 + MLT1K LTR MaLR 90 227 -361 2040 249 117 28 chr15 50409223 50410297 -50970224 - L1MEc LINE L1 -2751 3464 2295 953 288 57 20 chr15 50410338 50410845 -50969676 - L1MEc LINE L1 -4021 2375 1850 1421 256 83 61 chr15 50411163 50411386 -50969135 - L1MEc LINE L1 -4544 1852 1635 1755 172 7 3 chr15 50411386 50411671 -50968850 + AluJo SINE Alu 2 287 -25 1421 256 83 61 chr15 50411671 50412605 -50967916 - L1MEc LINE L1 -4761 1635 670 3732 175 53 28 chr15 50412706 50412766 -50967755 + MER21A LTR ERV1 23 80 -851 222 37 0 0 chr15 50412766 50412793 -50967728 + (TC)n Simple_repeat Simple_repeat 2 28 0 3732 175 53 28 chr15 50412793 50413563 -50966958 + MER21A LTR ERV1 80 921 -10 562 299 84 72 chr15 50413578 50414103 -50966418 - L1MEc LINE L1 -5831 565 35 16874 142 16 12 chr15 50414256 50415374 -50965147 - L1PA11 LINE L1 0 6174 5062 2270 115 0 0 chr15 50415374 50415670 -50964851 - AluSg SINE Alu -14 296 1 16874 142 16 12 chr15 50415670 50418276 -50962245 - L1PA11 LINE L1 -1112 5062 2406 493 101 0 0 chr15 50418279 50418348 -50962173 - Alu SINE Alu -240 69 1 1083 166 42 0 chr15 50418348 50418541 -50961980 + MER57A LTR ERV1 203 403 0 21 0 0 0 chr15 50419588 50419609 -50960912 + AT_rich Low_complexity Low_complexity 1 21 0 1985 135 0 0 chr15 50419655 50419971 -50960550 - AluSg SINE Alu 0 316 1 23 0 0 0 chr15 50420196 50420219 -50960302 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr15 50420429 50420462 -50960059 + AT_rich Low_complexity Low_complexity 1 33 0 1289 318 162 38 chr15 50421619 50422620 -50957901 - L3 LINE CR1 -16 1561 437 242 143 0 0 chr15 50422747 50422782 -50957739 - U2 snRNA snRNA -150 38 4 1078 167 6 6 chr15 50423256 50423436 -50957085 - MLT1A2 LTR MaLR 0 374 195 986 226 29 39 chr15 50423454 50423733 -50956788 - PABL_B LTR ERV1 -20 647 372 281 293 75 15 chr15 50423758 50423891 -50956630 - PABL_A LTR ERV1 -462 198 58 265 174 0 0 chr15 50424073 50424119 -50956402 + T-rich Low_complexity Low_complexity 1 46 0 440 206 50 14 chr15 50424704 50424845 -50955676 + PABL_B LTR ERV1 520 665 -2 1051 172 6 6 chr15 50424847 50425027 -50955494 + MLT1A2 LTR MaLR 195 374 0 242 143 0 0 chr15 50425501 50425536 -50954985 + U2 snRNA snRNA 4 38 -150 615 333 87 55 chr15 50425663 50426156 -50954365 + L3 LINE CR1 437 945 -632 1445 114 31 9 chr15 50426549 50426777 -50953744 - AluSc SINE Alu -76 233 1 191 264 57 0 chr15 50426789 50426842 -50953679 + MIR3 SINE MIR 101 156 -52 275 149 45 45 chr15 50426926 50426993 -50953528 + L1MC4a LINE L1 5834 5900 -1908 1242 175 128 8 chr15 50427478 50427629 -50952892 - AluJb SINE Alu -14 298 166 189 0 0 0 chr15 50427629 50427650 -50952871 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1242 175 128 8 chr15 50427650 50427749 -50952772 - AluJb SINE Alu -146 166 18 402 301 19 0 chr15 50428368 50428471 -50952050 - L2 LINE L2 0 3272 3168 184 139 0 70 chr15 50429180 50429223 -50951298 + (T)n Simple_repeat Simple_repeat 1 40 0 477 244 25 8 chr15 50429425 50429544 -50950977 - MLT1A2 LTR MaLR -253 121 1 2391 167 28 9 chr15 50429544 50429974 -50950547 - MLT1A2-int LTR MaLR 0 1735 1298 435 306 32 9 chr15 50430047 50430266 -50950255 + L1ME LINE L1 5544 5767 -354 851 290 79 29 chr15 50430513 50430854 -50949667 + LTR16C LTR ERVL 134 491 0 1811 173 51 13 chr15 50431937 50432312 -50948209 - MLT1B LTR MaLR -1 389 1 23 0 0 0 chr15 50432453 50432476 -50948045 + AT_rich Low_complexity Low_complexity 1 23 0 563 319 86 25 chr15 50433468 50433900 -50946621 + L1M4 LINE L1 3673 4130 -2016 1766 158 10 29 chr15 50434494 50434804 -50945717 - AluJo SINE Alu -8 304 1 1573 166 49 0 chr15 50435517 50435782 -50944739 + AluJb SINE Alu 13 290 -22 24 0 0 0 chr15 50436199 50436223 -50944298 + AT_rich Low_complexity Low_complexity 1 24 0 2392 149 20 46 chr15 50436257 50436761 -50943760 - LTR22B LTR ERVK 0 492 2 459 269 144 10 chr15 50437111 50437319 -50943202 + MLT1J LTR MaLR 274 509 -2 447 301 136 14 chr15 50437321 50437534 -50942987 - MIR SINE MIR -21 241 3 445 346 97 48 chr15 50437865 50438299 -50942222 + L2 LINE L2 2818 3272 0 321 235 78 69 chr15 50440411 50440513 -50940008 - AluJb SINE Alu -199 103 1 186 143 0 0 chr15 50440517 50440552 -50939969 + (TC)n Simple_repeat Simple_repeat 2 36 0 701 52 21 0 chr15 50440555 50440652 -50939869 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 1143 203 5 0 chr15 50440668 50440860 -50939661 - AluJb SINE Alu -34 278 86 620 309 5 19 chr15 50440881 50441088 -50939433 - MIR SINE MIR 0 262 59 246 298 67 29 chr15 50441165 50441269 -50939252 - MIR3 SINE MIR -18 190 83 2235 85 7 7 chr15 50441483 50441777 -50938744 + AluSg SINE Alu 1 294 -16 183 80 0 0 chr15 50444237 50444262 -50936259 + (GA)n Simple_repeat Simple_repeat 2 26 0 1112 214 39 75 chr15 50444361 50444749 -50935772 - L1ME2 LINE L1 -28 6136 5763 192 97 0 0 chr15 50445812 50445843 -50934678 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 1573 199 3 7 chr15 50445843 50446130 -50934391 - AluJo SINE Alu -26 286 1 979 93 0 0 chr15 50446253 50446382 -50934139 - AluSg/x SINE Alu -9 300 172 307 267 198 10 chr15 50446482 50446583 -50933938 + L2 LINE L2 3194 3313 0 250 260 52 0 chr15 50446606 50446683 -50933838 - MIR SINE MIR 0 262 182 2091 169 37 27 chr15 50446684 50447101 -50933420 + MSTB LTR MaLR 1 374 0 597 289 17 12 chr15 50447101 50447274 -50933247 - MIR SINE MIR -77 185 12 889 221 94 85 chr15 50447570 50447877 -50932644 - MSTB1 LTR MaLR -114 318 9 399 41 0 0 chr15 50447885 50447934 -50932587 + (CAT)n Simple_repeat Simple_repeat 2 50 0 3347 136 15 9 chr15 50449472 50450480 -50930041 - L1PBa LINE L1 -5067 1796 634 1081 175 5 0 chr15 50450481 50450675 -50929846 - L1PBa LINE L1 -6666 197 3 1230 271 70 50 chr15 50450825 50450883 -50929638 - L1M4 LINE L1 -1816 4330 4275 2063 101 49 0 chr15 50450883 50451170 -50929351 - AluSx SINE Alu -11 301 1 1230 271 70 50 chr15 50451170 50451292 -50929229 - L1M4 LINE L1 -1871 4275 4157 709 32 0 21 chr15 50451292 50451387 -50929134 - L1PA4 LINE L1 0 6155 6063 1230 271 70 50 chr15 50451387 50451928 -50928593 - L1M4 LINE L1 -1989 4157 3593 341 319 80 42 chr15 50451946 50452209 -50928312 - L1MEd LINE L1 -5773 346 74 25 0 0 0 chr15 50452468 50452493 -50928028 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr15 50453514 50453537 -50926984 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 50453886 50453908 -50926613 + AT_rich Low_complexity Low_complexity 1 22 0 392 331 278 6 chr15 50454099 50454419 -50926102 + L2 LINE L2 2524 2930 -384 222 62 0 0 chr15 50455433 50455465 -50925056 + (TG)n Simple_repeat Simple_repeat 1 32 0 7009 51 5 2 chr15 50456225 50457300 -50923221 + L1PA7 LINE L1 5055 6141 -13 242 281 148 0 chr15 50457671 50457867 -50922654 + L1MC4a LINE L1 5701 5925 -1883 230 257 177 26 chr15 50458120 50458233 -50922288 + MIR SINE MIR 45 174 -88 22 35 0 0 chr15 50458969 50458998 -50921523 + AT_rich Low_complexity Low_complexity 1 29 0 297 230 168 9 chr15 50459583 50459696 -50920825 + MIR SINE MIR 131 261 -1 37 62 0 0 chr15 50459918 50459983 -50920538 + AT_rich Low_complexity Low_complexity 1 65 0 1903 128 3 28 chr15 50460246 50460565 -50919956 + AluSq SINE Alu 1 312 0 404 358 112 12 chr15 50460714 50461162 -50919359 - L2 LINE L2 -215 3057 2532 1824 116 4 0 chr15 50461258 50461508 -50919013 + AluSx SINE Alu 43 293 -19 11162 27 0 2 chr15 50461999 50464095 -50916426 + L1PA4 LINE L1 4058 6152 -3 22 0 0 0 chr15 50464095 50464117 -50916404 + AT_rich Low_complexity Low_complexity 1 22 0 229 281 0 0 chr15 50464624 50464681 -50915840 + L2 LINE L2 3254 3310 -3 339 228 76 44 chr15 50465035 50465193 -50915328 + MER113 DNA MER1_type? 19 181 -340 295 305 79 6 chr15 50465516 50465680 -50914841 - L1MEc LINE L1 -4576 2562 2387 7432 197 28 7 chr15 50465710 50466864 -50913657 + L1PA16 LINE L1 3510 4638 -1528 230 20 41 41 chr15 50466864 50466913 -50913608 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 7432 197 28 7 chr15 50466913 50468354 -50912167 + L1PA16 LINE L1 4638 6160 -6 295 305 80 52 chr15 50468361 50468935 -50911586 - L1MEc LINE L1 -4813 2325 1736 314 302 101 38 chr15 50468967 50469126 -50911395 - L1MEc LINE L1 -5318 1541 1373 23 33 0 0 chr15 50470332 50470362 -50910159 + AT_rich Low_complexity Low_complexity 1 30 0 229 146 36 36 chr15 50472589 50472644 -50907877 - MER5C DNA MER1_type -200 124 70 1637 40 15 0 chr15 50472652 50472853 -50907668 + AluY SINE Alu 100 303 -8 3768 274 45 22 chr15 50474103 50475583 -50904938 + L1MC/D LINE L1 3595 5108 -1038 522 0 0 0 chr15 50475600 50475658 -50904863 + (TA)n Simple_repeat Simple_repeat 2 59 0 714 237 136 4 chr15 50475725 50475953 -50904568 + L1ME2 LINE L1 5688 5945 -217 7004 112 8 3 chr15 50475962 50477137 -50903384 - L1MA3 LINE L1 -10 6295 5115 579 285 14 42 chr15 50477138 50477352 -50903169 + L1ME2 LINE L1 5935 6142 -22 255 207 46 46 chr15 50477389 50477476 -50903045 + LTR33 LTR ERVL 435 521 0 417 305 46 101 chr15 50478268 50478832 -50901689 - L2 LINE L2 -3 3310 2763 873 236 76 53 chr15 50480318 50480831 -50899690 - L1ME LINE L1 -581 5583 5083 2573 45 3 0 chr15 50480831 50481141 -50899380 - AluY SINE Alu 0 311 1 873 236 76 53 chr15 50481141 50481845 -50898676 - L1ME LINE L1 -1081 5083 4141 24 67 0 0 chr15 50481932 50481977 -50898544 + AT_rich Low_complexity Low_complexity 1 45 0 373 219 107 58 chr15 50482287 50482492 -50898029 + L1MC/D LINE L1 5256 5470 -2338 198 275 0 0 chr15 50482492 50482561 -50897960 + GA-rich Low_complexity Low_complexity 2 70 0 557 261 138 11 chr15 50482818 50483006 -50897515 + MIR SINE MIR 32 243 -19 203 77 0 51 chr15 50483845 50483884 -50896637 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 704 262 39 0 chr15 50484213 50484442 -50896079 - L1MA9 LINE L1 -37 6275 6038 202 313 0 47 chr15 50484639 50484703 -50895818 + L2 LINE L2 3210 3270 -2 2082 184 127 22 chr15 50484891 50485348 -50895173 - MLT1D LTR MaLR 0 505 1 239 315 7 68 chr15 50485757 50485903 -50894618 + L3b LINE CR1 1323 1459 -124 1831 139 21 11 chr15 50486406 50486693 -50893828 - AluSx SINE Alu -22 290 1 38 0 0 0 chr15 50486859 50486897 -50893624 + AT_rich Low_complexity Low_complexity 1 38 0 814 212 0 30 chr15 50487110 50487275 -50893246 + AluJb SINE Alu 148 307 -5 300 322 63 40 chr15 50487555 50487729 -50892792 - MIR SINE MIR -2 260 83 1573 173 39 45 chr15 50489412 50489724 -50890797 + AluJb SINE Alu 1 310 -2 2032 96 34 14 chr15 50489743 50490036 -50890485 + AluY SINE Alu 1 299 -12 1490 62 1 2 chr15 50490433 50490642 -50889879 - L1P LINE L1 -1179 4967 4761 428 287 11 0 chr15 50490761 50490855 -50889666 - MER81 DNA DNA 0 114 20 382 343 29 0 chr15 50490972 50491109 -50889412 - MIR SINE MIR -94 168 28 888 268 85 18 chr15 50492876 50493281 -50887240 + MLT1H LTR MaLR 10 549 0 613 336 128 30 chr15 50493294 50493630 -50886891 - L3 LINE CR1 0 1577 1209 243 243 68 14 chr15 50493633 50493707 -50886814 + MLT1J1 LTR MaLR 259 336 -110 354 293 0 0 chr15 50493753 50493859 -50886662 + MLT1I LTR MaLR 304 409 0 427 336 21 0 chr15 50493863 50494006 -50886515 - L3 LINE CR1 -769 808 663 668 94 0 0 chr15 50494030 50494126 -50886395 + L1 LINE L1 4515 4610 -1536 1451 192 34 6 chr15 50494126 50494448 -50886073 + L1MA4 LINE L1 5958 6289 -11 320 321 172 14 chr15 50494464 50494679 -50885842 - L3 LINE CR1 -951 626 378 506 331 56 32 chr15 50494784 50495035 -50885486 + MIR SINE MIR 2 258 -4 21 0 0 0 chr15 50495092 50495113 -50885408 + AT_rich Low_complexity Low_complexity 1 21 0 1777 151 10 7 chr15 50496659 50496958 -50883563 + AluSx SINE Alu 2 301 -11 1225 234 87 19 chr15 50498317 50498638 -50881883 + MER2 DNA MER2_type 2 344 0 1599 145 70 36 chr15 50499072 50499431 -50881090 - THE1C LTR MaLR -2 373 3 318 50 0 0 chr15 50500540 50500580 -50879941 + (CA)n Simple_repeat Simple_repeat 2 41 0 2460 64 0 0 chr15 50500843 50501141 -50879380 + AluY SINE Alu 1 298 -13 821 317 33 64 chr15 50501166 50501620 -50878901 + LTR16B LTR ERVL 2 441 -23 33 73 0 0 chr15 50502158 50502226 -50878295 + AT_rich Low_complexity Low_complexity 1 68 0 22 35 0 0 chr15 50503242 50503271 -50877250 + AT_rich Low_complexity Low_complexity 1 29 0 737 167 23 15 chr15 50503271 50503403 -50877118 + AluSq/x SINE Alu 2 134 -178 236 250 0 0 chr15 50503404 50503480 -50877041 + (TA)n Simple_repeat Simple_repeat 1 76 0 814 336 16 8 chr15 50503731 50503987 -50876534 + MIR SINE MIR 2 259 -3 250 301 51 68 chr15 50505653 50505829 -50874692 + MIR SINE MIR 20 192 -70 590 234 0 8 chr15 50505950 50506074 -50874447 - MIR SINE MIR -65 143 21 317 274 118 10 chr15 50506371 50506473 -50874048 - MIR3 SINE MIR -15 193 81 537 315 98 56 chr15 50506607 50507289 -50873232 + L1ME4a LINE L1 3662 4372 -1774 234 258 41 52 chr15 50507349 50507446 -50873075 + L2 LINE L2 1847 1942 -1372 232 349 140 36 chr15 50507518 50508080 -50872441 + L2 LINE L2 2652 3271 -1 387 292 137 31 chr15 50508090 50508585 -50871936 + L1ME4a LINE L1 4458 5019 -1127 536 324 92 36 chr15 50508784 50508967 -50871554 + L1ME4a LINE L1 5472 5643 -478 1489 214 93 38 chr15 50508967 50509156 -50871365 + MLT1C LTR MaLR 1 178 -289 2372 86 3 0 chr15 50509156 50509460 -50871061 + AluSg SINE Alu 1 305 -5 1489 214 93 38 chr15 50509460 50509713 -50870808 + MLT1C LTR MaLR 178 467 0 536 324 92 36 chr15 50509713 50510029 -50870492 + L1ME4a LINE L1 5643 5999 -122 8847 194 53 99 chr15 50510128 50511274 -50869247 + L1MA9 LINE L1 2651 3848 -2464 1388 174 44 34 chr15 50511274 50511568 -50868953 + AluJb SINE Alu 1 297 -15 8847 194 53 99 chr15 50511568 50512062 -50868459 + L1MA9 LINE L1 3848 4363 -1949 1090 189 5 24 chr15 50512062 50512268 -50868253 + AluJb SINE Alu 91 292 -20 8847 194 53 99 chr15 50512268 50513736 -50866785 + L1MA9 LINE L1 4363 5897 -415 1495 53 0 80 chr15 50513736 50513962 -50866559 + AluY SINE Alu 99 306 -5 8847 194 53 99 chr15 50513962 50514009 -50866512 + L1MA9 LINE L1 5897 5945 -367 225 65 0 0 chr15 50514009 50514040 -50866481 + (CA)n Simple_repeat Simple_repeat 2 32 0 8847 194 53 99 chr15 50514040 50514386 -50866135 + L1MA9 LINE L1 5945 6164 -148 225 0 0 0 chr15 50514386 50514411 -50866110 + (CA)n Simple_repeat Simple_repeat 1 25 0 8847 194 53 99 chr15 50514411 50514554 -50865967 + L1MA9 LINE L1 6164 6312 0 307 255 20 10 chr15 50514616 50514718 -50865803 + (TA)n Simple_repeat Simple_repeat 2 104 0 251 239 71 71 chr15 50515206 50515319 -50865202 + MIR3 SINE MIR 86 198 -10 2310 87 7 13 chr15 50516091 50516400 -50864121 + AluY SINE Alu 1 307 -4 445 235 0 10 chr15 50516717 50516815 -50863706 - Tigger7 DNA MER2_type -1 2490 2394 1242 215 23 4 chr15 50516820 50517076 -50863445 - Tigger7 DNA MER2_type -2226 261 1 294 320 23 39 chr15 50517436 50517564 -50862957 - L2 LINE L2 0 3272 3147 2566 53 0 0 chr15 50517869 50518173 -50862348 + AluY SINE Alu 1 304 -7 962 270 106 82 chr15 50518343 50519277 -50861244 + L1M4 LINE L1 2898 3853 -2293 643 224 68 0 chr15 50519279 50519426 -50861095 + L1MD2 LINE L1 19 175 -6365 * 1295 251 60 102 chr15 50519424 50519926 -50860595 + L1MD2 LINE L1 606 1086 -5454 493 236 74 30 chr15 50520062 50520265 -50860256 + L1MD2 LINE L1 1089 1300 -5240 2080 215 21 0 chr15 50520279 50520744 -50859777 - L1 LINE L1 -1602 4938 4464 284 76 86 9 chr15 50520778 50520883 -50859638 + (TA)n Simple_repeat Simple_repeat 2 114 0 8118 26 7 0 chr15 50520894 50522620 -50857901 - L1PA7 LINE L1 -18 6136 4405 5426 120 0 2 chr15 50523131 50524297 -50856224 - L1PA11 LINE L1 0 6174 4982 1198 203 94 14 chr15 50524311 50524889 -50855632 - L1MDa LINE L1 -3592 2948 2326 717 223 91 4 chr15 50524940 50525205 -50855316 + L1MD2 LINE L1 2662 2949 -3591 2944 242 68 29 chr15 50525221 50525380 -50855141 + L1MD2 LINE L1 4862 5013 -1740 1915 154 0 3 chr15 50525380 50525665 -50854856 - AluSg SINE Alu -26 284 1 2944 242 68 29 chr15 50525665 50527282 -50853239 + L1MD2 LINE L1 5013 6751 -2 275 218 23 11 chr15 50527425 50527512 -50853009 + (TA)n Simple_repeat Simple_repeat 2 89 0 2396 268 55 7 chr15 50527552 50528369 -50852152 + L1ME2 LINE L1 5299 6154 -10 252 303 51 34 chr15 50528626 50529057 -50851464 + L1 LINE L1 4067 4503 -1643 13533 145 42 8 chr15 50529350 50531646 -50848875 - Tigger1 DNA MER2_type 0 2418 45 5619 183 26 23 chr15 50531664 50532966 -50847555 + L1MA4 LINE L1 3866 5162 -1532 1628 182 7 4 chr15 50532966 50533246 -50847275 + AluJb SINE Alu 1 281 -31 5619 183 26 23 chr15 50533246 50533706 -50846815 + L1MA4 LINE L1 5162 5619 -1075 198 71 0 0 chr15 50533706 50533734 -50846787 + (CAA)n Simple_repeat Simple_repeat 1 28 0 5619 183 26 23 chr15 50533734 50534709 -50845812 + L1MA4 LINE L1 5619 6687 -7 311 181 43 11 chr15 50534757 50534851 -50845670 + L1MB3 LINE L1 6087 6183 0 224 330 117 67 chr15 50534880 50535119 -50845402 + L2 LINE L2 3022 3272 0 26 0 0 0 chr15 50535205 50535231 -50845290 + AT_rich Low_complexity Low_complexity 1 26 0 697 111 16 24 chr15 50535231 50535357 -50845164 + L1MA4 LINE L1 6176 6300 0 238 200 0 0 chr15 50535376 50535421 -50845100 - Tigger1 DNA MER2_type -2373 45 1 24 32 0 0 chr15 50535730 50535761 -50844760 + AT_rich Low_complexity Low_complexity 1 31 0 335 317 98 40 chr15 50535806 50536413 -50844108 + L1MC4a LINE L1 5288 5889 -273 2021 116 0 0 chr15 50537005 50537281 -50843240 - AluY SINE Alu -13 298 23 224 229 21 0 chr15 50537593 50537641 -50842880 + CT-rich Low_complexity Low_complexity 2 50 0 2579 190 29 59 chr15 50538058 50538689 -50841832 + LTR9 LTR ERV1 1 612 0 1999 144 0 10 chr15 50540036 50540335 -50840186 - AluSx SINE Alu -16 296 1 2069 146 13 0 chr15 50540689 50540997 -50839524 + AluSx SINE Alu 1 312 0 483 130 0 0 chr15 50541000 50541077 -50839444 + (GGGGA)n Simple_repeat Simple_repeat 2 78 0 2380 65 0 3 chr15 50541844 50542137 -50838384 + AluY SINE Alu 1 292 -19 556 332 79 53 chr15 50544994 50545906 -50834615 + HAL1 LINE L1 327 1262 -1245 306 301 173 0 chr15 50546035 50546191 -50834330 + HAL1 LINE L1 1682 1864 -643 2282 91 3 7 chr15 50546288 50546596 -50833925 + AluSc SINE Alu 1 307 -2 218 250 0 16 chr15 50547095 50547159 -50833362 + (TG)n Simple_repeat Simple_repeat 2 64 0 2104 115 0 17 chr15 50548447 50548742 -50831779 + AluSg SINE Alu 1 290 -20 209 309 24 71 chr15 50549018 50549102 -50831419 + MIR3 SINE MIR 4 83 -125 358 262 173 47 chr15 50549112 50549326 -50831195 + L1ME LINE L1 679 919 -5151 238 136 0 119 chr15 50549353 50549412 -50831109 + L1ME3 LINE L1 6107 6158 -4 200 266 128 75 chr15 50549424 50549612 -50830909 - L2 LINE L2 -620 2694 2497 1448 316 175 27 chr15 50549636 50550201 -50830320 - L2 LINE L2 -962 2352 1872 2122 117 3 35 chr15 50550201 50550518 -50830003 - AluSq SINE Alu -6 307 1 1448 316 175 27 chr15 50550518 50551064 -50829457 - L2 LINE L2 -1442 1872 1076 2046 124 0 0 chr15 50551856 50552162 -50828359 + AluSx SINE Alu 1 306 0 302 253 46 0 chr15 50553794 50553881 -50826640 - L2 LINE L2 -1477 1837 1747 465 233 185 0 chr15 50554638 50554784 -50825737 - MER5A DNA MER1_type -1 188 16 788 268 49 100 chr15 50555929 50556417 -50824104 - LTR16B LTR ERVL -1 463 1 323 263 207 20 chr15 50557729 50557927 -50822594 + MIR SINE MIR 28 262 0 551 288 128 55 chr15 50558464 50558957 -50821564 + L1M4 LINE L1 4127 4655 -1491 191 333 69 0 chr15 50560755 50560857 -50819664 - MIR SINE MIR -20 242 134 665 336 40 8 chr15 50562010 50562263 -50818258 + L3 LINE CR1 1312 1572 -5 2104 118 10 3 chr15 50562464 50562769 -50817752 + AluSg SINE Alu 1 307 -3 1427 200 64 0 chr15 50563232 50563562 -50816959 + L1MA5 LINE L1 5950 6300 0 526 190 10 0 chr15 50563784 50563884 -50816637 + AluJo SINE Alu 34 134 -178 22 70 0 0 chr15 50564473 50564516 -50816005 + AT_rich Low_complexity Low_complexity 1 43 0 322 323 45 76 chr15 50564769 50564992 -50815529 - MIR SINE MIR -10 252 37 369 338 102 47 chr15 50565252 50565595 -50814926 + L1PB4 LINE L1 58 419 -6431 230 301 0 0 chr15 50566420 50566493 -50814028 + L1PA15-16 LINE L1 1473 1545 -5304 12530 218 28 14 chr15 50566513 50571664 -50808857 + L1PB4 LINE L1 1355 6848 -11 2092 122 26 0 chr15 50571828 50572132 -50808389 + AluSx SINE Alu 1 312 0 234 368 35 9 chr15 50572407 50572521 -50808000 + MIR SINE MIR 30 146 -62 3183 14 0 0 chr15 50573023 50573387 -50807134 + L1PA2 LINE L1 5788 6151 -4 467 261 140 19 chr15 50573442 50573599 -50806922 + MIR3 SINE MIR 8 183 -25 328 143 0 143 chr15 50573885 50573920 -50806601 + MADE1 DNA Mariner 5 23 -57 1978 48 0 183 chr15 50573920 50574297 -50806224 - AluY SINE Alu -3 308 1 328 143 0 143 chr15 50574297 50574345 -50806176 + MADE1 DNA Mariner 23 76 -4 8875 92 6 0 chr15 50574578 50576617 -50803904 + L1PA7 LINE L1 4106 6153 -1 1358 212 67 3 chr15 50577617 50577933 -50802588 - MER58B DNA MER1_type 0 341 6 236 280 208 0 chr15 50578105 50578230 -50802291 - MIR SINE MIR 0 262 112 643 291 114 0 chr15 50578256 50578555 -50801966 + MER46C DNA MER2_type 5 337 -1 224 354 46 15 chr15 50578587 50578717 -50801804 + MIR3 SINE MIR 2 135 -73 239 348 30 49 chr15 50579132 50579296 -50801225 + L2 LINE L2 3102 3262 -10 321 309 143 17 chr15 50579399 50579574 -50800947 + MIR SINE MIR 23 219 -43 990 226 15 5 chr15 50580895 50581099 -50799422 - MER58A DNA MER1_type 0 224 19 413 316 79 7 chr15 50581099 50581251 -50799270 + MIR3 SINE MIR 5 167 -41 355 115 16 0 chr15 50581526 50581587 -50798934 + MER53 DNA DNA 125 186 -3 472 234 48 8 chr15 50583659 50583783 -50796738 + MLT1J2 LTR MaLR 3 131 -319 523 305 138 0 chr15 50583836 50584003 -50796518 + MLT1J2 LTR MaLR 240 429 -21 624 266 11 11 chr15 50586686 50586874 -50793647 - MER5A DNA MER1_type -1 188 1 34833 38 0 1 chr15 50587637 50592702 -50787819 - L1PA4 LINE L1 0 6155 1094 22 35 0 0 chr15 50593312 50593341 -50787180 + AT_rich Low_complexity Low_complexity 1 29 0 203 175 0 0 chr15 50593935 50593975 -50786546 + A-rich Low_complexity Low_complexity 1 40 0 220 321 92 9 chr15 50594340 50594449 -50786072 - L2 LINE L2 -19 3253 3136 4823 97 35 17 chr15 50594532 50595285 -50785236 + L1MA3 LINE L1 5540 6305 0 1484 151 3 120 chr15 50595437 50595761 -50784760 + AluSx SINE Alu 1 286 -26 243 51 26 26 chr15 50595812 50595851 -50784670 + MADE1 DNA Mariner 1 39 -41 6682 8 0 0 chr15 50596256 50597006 -50783515 + L1PA2 LINE L1 5404 6153 -2 279 0 0 0 chr15 50597101 50597132 -50783389 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 414 282 80 36 chr15 50597262 50597764 -50782757 + L1P LINE L1 4762 5275 -871 2179 88 3 7 chr15 50598498 50598792 -50781729 + AluSx SINE Alu 1 293 -19 2341 145 57 15 chr15 50601046 50601523 -50778998 + L1MB4 LINE L1 5678 6174 -6 239 61 122 0 chr15 50602062 50602111 -50778410 + L1MB4 LINE L1 6126 6180 0 1276 269 131 12 chr15 50602153 50602718 -50777803 + L1MC4 LINE L1 5254 5885 -1923 1092 232 21 21 chr15 50602719 50603055 -50777466 + L1MC4 LINE L1 6975 7310 -732 2288 179 42 11 chr15 50603415 50603970 -50776551 + L1MB7 LINE L1 4854 5434 -744 483 248 0 0 chr15 50603964 50604077 -50776444 + L1MA9 LINE L1 6162 6274 -38 * 3312 182 20 46 chr15 50604096 50604859 -50775662 + L1MB7 LINE L1 5431 6173 -11 2450 81 0 0 chr15 50605888 50606197 -50774324 - AluY SINE Alu -2 309 1 310 360 0 0 chr15 50606293 50606393 -50774128 - L1MC4a LINE L1 -1268 6540 6441 496 186 157 2 chr15 50606591 50606766 -50773755 - MER46A DNA MER2_type -1 235 1 886 236 66 12 chr15 50606954 50607196 -50773325 - MIR SINE MIR -2 260 6 314 350 118 43 chr15 50607231 50607622 -50772899 + L1MC4a LINE L1 5517 5936 -1872 701 287 43 55 chr15 50607659 50607987 -50772534 - L2 LINE L2 -67 3246 2923 586 243 82 29 chr15 50608047 50608253 -50772268 + LTR16C LTR ERVL 79 295 -196 586 189 151 19 chr15 50608253 50608412 -50772109 - MER5A DNA MER1_type -1 188 9 328 217 52 61 chr15 50608480 50608595 -50771926 + LTR16C LTR ERVL 367 480 -11 560 236 104 91 chr15 50608602 50608987 -50771534 - L2 LINE L2 -389 2925 2536 529 295 4 97 chr15 50608988 50609225 -50771296 - L2 LINE L2 -999 2315 2101 1758 153 13 36 chr15 50610336 50610644 -50769877 + AluSx SINE Alu 1 301 -11 227 111 0 0 chr15 50610644 50610689 -50769832 - LTR66 LTR ERVL -172 438 394 27 0 0 0 chr15 50610746 50610773 -50769748 + AT_rich Low_complexity Low_complexity 1 27 0 24 67 0 0 chr15 50610889 50610934 -50769587 + AT_rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr15 50611183 50611208 -50769313 + AT_rich Low_complexity Low_complexity 1 25 0 399 306 38 19 chr15 50611276 50611433 -50769088 - MIR SINE MIR -19 243 84 194 289 19 0 chr15 50611909 50611961 -50768560 - MIR3 SINE MIR -3 205 153 278 256 24 37 chr15 50612319 50612401 -50768120 + MIR3 SINE MIR 87 167 -41 419 213 43 0 chr15 50612406 50612500 -50768021 - MER20 DNA MER1_type -33 186 89 230 330 184 0 chr15 50613561 50613773 -50766748 - L1MC/D LINE L1 -2014 5794 5544 279 289 0 11 chr15 50614607 50614697 -50765824 - LTR33 LTR ERVL -387 134 46 252 255 0 20 chr15 50615065 50615116 -50765405 + MIR3 SINE MIR 111 160 -48 264 313 99 30 chr15 50615154 50615285 -50765236 + MER5A DNA MER1_type 50 189 0 2337 93 0 3 chr15 50615625 50615957 -50764564 - L1PB1 LINE L1 0 6151 5821 339 293 55 55 chr15 50616016 50616180 -50764341 + MIR3 SINE MIR 42 205 -3 1889 62 0 0 chr15 50617283 50617507 -50763014 + AluY SINE Alu 37 260 -51 977 187 80 126 chr15 50617790 50618164 -50762357 + MLT1A1 LTR MaLR 1 357 -8 187 274 77 51 chr15 50618419 50618534 -50761987 + MIR SINE MIR 53 170 -92 414 314 53 53 chr15 50618534 50618837 -50761684 - LTR16C LTR ERVL -1 490 188 294 200 29 14 chr15 50619838 50619908 -50760613 - MIR SINE MIR -101 161 91 1206 64 0 19 chr15 50619928 50620085 -50760436 + AluY SINE Alu 149 302 -9 2101 128 0 3 chr15 50621099 50621397 -50759124 + AluSx SINE Alu 1 297 -15 205 196 0 22 chr15 50621552 50621598 -50758923 + T-rich Low_complexity Low_complexity 5 49 0 633 311 73 76 chr15 50621601 50621929 -50758592 + L2 LINE L2 2897 3223 -49 207 207 17 0 chr15 50621931 50621989 -50758532 + (TGAA)n Simple_repeat Simple_repeat 3 61 0 272 288 34 51 chr15 50621991 50622109 -50758412 - L2 LINE L2 -1028 2286 2171 235 294 165 18 chr15 50622158 50622267 -50758254 + MER5A DNA MER1_type 64 188 -1 556 297 89 38 chr15 50623173 50623409 -50757112 + MIR SINE MIR 15 262 0 331 283 56 56 chr15 50623606 50623804 -50756717 - MARNA DNA Mariner -109 477 280 2335 62 13 3 chr15 50623824 50624131 -50756390 - AluY SINE Alu 0 311 2 306 327 96 45 chr15 50625477 50625676 -50754845 + MIR SINE MIR 20 228 -34 1426 192 20 9 chr15 50625963 50626282 -50754239 + L1MA7 LINE L1 5099 5427 -744 785 174 48 18 chr15 50626282 50626449 -50754072 + AluJo SINE Alu 121 292 -20 4243 168 22 27 chr15 50626460 50626680 -50753841 + L1MA7 LINE L1 5428 5648 -643 1741 151 0 108 chr15 50626680 50627070 -50753451 - MER7A DNA MER2_type 0 346 1 4243 168 22 27 chr15 50627070 50627713 -50752808 + L1MA7 LINE L1 5648 6287 -4 2280 103 0 31 chr15 50628186 50628506 -50752015 + AluSg SINE Alu 1 310 0 234 213 21 0 chr15 50628930 50628977 -50751544 - MER5B DNA MER1_type -129 49 2 511 283 46 6 chr15 50629551 50629724 -50750797 + MIR SINE MIR 57 236 -26 185 271 107 36 chr15 50629871 50630011 -50750510 - L2 LINE L2 -3 3310 3161 270 0 0 0 chr15 50631341 50631371 -50749150 + (CA)n Simple_repeat Simple_repeat 1 30 0 196 308 0 0 chr15 50638086 50638138 -50742383 + L2 LINE L2 2591 2642 -672 183 367 60 33 chr15 50638217 50638367 -50742154 + L2 LINE L2 2823 2976 -338 785 288 12 33 chr15 50638966 50639049 -50741472 + MIR SINE MIR 23 106 -156 1829 143 4 0 chr15 50639049 50639321 -50741200 + AluSc SINE Alu 37 309 0 785 288 12 33 chr15 50639321 50639480 -50741041 + MIR SINE MIR 106 260 -2 233 305 166 13 chr15 50639853 50640004 -50740517 - MIR SINE MIR -11 251 78 387 295 85 30 chr15 50640406 50640606 -50739915 - MIR SINE MIR -2 260 50 3009 109 2 2 chr15 50641083 50641522 -50738999 - L1PA10 LINE L1 -13 6155 5717 192 259 92 97 chr15 50642631 50642816 -50737705 - MIR SINE MIR 0 262 79 727 279 73 9 chr15 50643289 50643522 -50736999 - MIR SINE MIR -12 250 3 6699 117 17 21 chr15 50643799 50644805 -50735716 + L1MA2 LINE L1 5105 6109 -195 2179 86 4 0 chr15 50644805 50645126 -50735395 - AluY SINE Alu 0 322 1 6699 117 17 21 chr15 50645126 50645318 -50735203 + L1MA2 LINE L1 6109 6300 -4 271 350 86 7 chr15 50645826 50645966 -50734555 - MIR3 SINE MIR -55 153 3 223 263 76 93 chr15 50646394 50646512 -50734009 - MIR SINE MIR -57 205 90 2375 78 3 3 chr15 50646545 50646852 -50733669 - AluY SINE Alu -4 307 1 564 311 99 9 chr15 50647019 50647241 -50733280 + MIR SINE MIR 21 262 0 181 222 0 0 chr15 50648538 50648574 -50731947 - MIR SINE MIR -149 113 78 4280 243 115 34 chr15 50648836 50650754 -50729767 + L1ME2 LINE L1 2666 4955 -1209 1901 165 7 0 chr15 50650754 50651063 -50729458 + AluJb SINE Alu 1 311 -1 4280 243 115 34 chr15 50651063 50652370 -50728151 + L1ME2 LINE L1 4955 6155 -9 201 349 64 60 chr15 50653720 50654001 -50726520 + L2 LINE L2 2328 2609 -705 32 43 0 0 chr15 50654015 50654061 -50726460 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr15 50654430 50654453 -50726068 + AT_rich Low_complexity Low_complexity 1 23 0 525 322 81 0 chr15 50655510 50655659 -50724862 + LTR16A LTR ERVL 176 336 -114 2119 326 40 25 chr15 50655791 50656800 -50723721 + HERV16 LTR ERVL 76 1099 -3897 659 321 48 11 chr15 50657015 50657255 -50723266 + HERV16 LTR ERVL 1357 1675 -3433 662 330 34 0 chr15 50657300 50657509 -50723012 + ERVL LTR ERVL 4217 4432 -1332 644 329 25 25 chr15 50657737 50658020 -50722501 + ERVL LTR ERVL 4708 4990 -774 21 71 0 0 chr15 50658308 50658350 -50722171 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr15 50659427 50659456 -50721065 + AT_rich Low_complexity Low_complexity 1 29 0 400 324 0 0 chr15 50659944 50660049 -50720472 - L2 LINE L2 0 3272 3168 209 241 37 0 chr15 50663363 50663417 -50717104 + (CATA)n Simple_repeat Simple_repeat 1 56 0 594 51 0 0 chr15 50663418 50663496 -50717025 + L1PA3 LINE L1 6075 6152 -3 2723 57 3 19 chr15 50663523 50663892 -50716629 + L1PA8A LINE L1 5769 6131 0 343 322 14 27 chr15 50664223 50664369 -50716152 - MIR SINE MIR -37 225 82 325 338 94 38 chr15 50664672 50665012 -50715509 - L2 LINE L2 -527 2787 2429 26 0 0 0 chr15 50665242 50665268 -50715253 + AT_rich Low_complexity Low_complexity 1 26 0 271 321 127 0 chr15 50666012 50666146 -50714375 - MIR3 SINE MIR -3 205 55 21 36 0 0 chr15 50668838 50668866 -50711655 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr15 50669022 50669050 -50711471 + AT_rich Low_complexity Low_complexity 1 28 0 1228 91 42 0 chr15 50672214 50672379 -50708142 + AluSg/x SINE Alu 128 299 -11 195 42 0 0 chr15 50672379 50672403 -50708118 + (GA)n Simple_repeat Simple_repeat 1 24 0 2114 210 10 0 chr15 50673713 50674099 -50706422 + MLT1F1 LTR MaLR 125 514 -53 340 314 113 8 chr15 50674345 50674469 -50706052 + L2 LINE L2 3136 3272 0 265 249 64 98 chr15 50674691 50674864 -50705657 - MIR SINE MIR -50 212 46 23 33 0 0 chr15 50674946 50674976 -50705545 + AT_rich Low_complexity Low_complexity 1 30 0 741 288 36 24 chr15 50675303 50675553 -50704968 + MIR SINE MIR 5 257 -5 237 318 0 12 chr15 50675693 50675778 -50704743 + MIR SINE MIR 53 136 -126 1287 233 41 6 chr15 50677328 50677671 -50702850 - L1 LINE L1 -914 5232 4878 1808 156 18 9 chr15 50677678 50678004 -50702517 + L1MB2 LINE L1 5332 5660 -511 1920 118 38 13 chr15 50678008 50678322 -50702199 - L1PA11 LINE L1 -5 6169 5848 2225 181 35 27 chr15 50678322 50678488 -50702033 + L1PA11 LINE L1 5662 5825 -346 1902 127 6 62 chr15 50678488 50678810 -50701711 + AluSq SINE Alu 1 304 -9 2225 181 35 27 chr15 50678810 50679129 -50701392 + L1MB2 LINE L1 5825 6152 -19 1621 170 4 11 chr15 50679151 50679422 -50701099 - AluJo SINE Alu -9 303 35 228 191 0 0 chr15 50679905 50679947 -50700574 - Charlie8 DNA MER1_type -2153 264 223 201 39 0 0 chr15 50681502 50681528 -50698993 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 905 239 101 80 chr15 50682516 50682841 -50697680 + L1MC5 LINE L1 7213 7530 -431 3862 24 0 9 chr15 50682841 50683330 -50697191 + L1PA3 LINE L1 5703 6155 0 905 239 101 80 chr15 50683330 50683689 -50696832 + L1MC5 LINE L1 7530 7911 -50 334 26 0 0 chr15 50684271 50684310 -50696211 + MADE1 DNA Mariner 1 39 -41 679 297 57 9 chr15 50685265 50685477 -50695044 - MIR SINE MIR 0 262 41 221 318 142 34 chr15 50687192 50687368 -50693153 - MIR SINE MIR -59 203 9 201 154 0 0 chr15 50687844 50687883 -50692638 + (CA)n Simple_repeat Simple_repeat 2 40 0 273 267 242 0 chr15 50688588 50688708 -50691813 - MIR SINE MIR -81 181 33 4651 144 24 1 chr15 50689370 50690192 -50690329 + L1MA4 LINE L1 5455 6295 -5 290 331 59 29 chr15 50690953 50691089 -50689432 + L2 LINE L2 3123 3262 -10 1997 141 30 0 chr15 50691431 50691730 -50688791 + AluSx SINE Alu 5 312 0 279 0 0 0 chr15 50691953 50691984 -50688537 + (CA)n Simple_repeat Simple_repeat 1 31 0 2969 140 16 6 chr15 50692522 50693023 -50687498 - L1PA16 LINE L1 -9 6157 5652 315 0 0 0 chr15 50693558 50693593 -50686928 + (TG)n Simple_repeat Simple_repeat 2 36 0 196 214 54 54 chr15 50694362 50694418 -50686103 + MIR SINE MIR 75 130 -78 27 0 0 0 chr15 50694459 50694486 -50686035 + AT_rich Low_complexity Low_complexity 1 27 0 510 217 27 65 chr15 50696038 50696222 -50684299 + MER5B DNA MER1_type 1 177 -1 242 364 45 0 chr15 50696330 50696440 -50684081 + MIR SINE MIR 37 151 -111 317 270 54 9 chr15 50696825 50696936 -50683585 + L3b LINE CR1 1286 1401 -182 449 276 86 31 chr15 50697036 50697199 -50683322 + MIR SINE MIR 12 183 -79 416 169 14 0 chr15 50697200 50697271 -50683250 + MER94 DNA DNA 1 72 -62 412 296 37 0 chr15 50698406 50698514 -50682007 + MIR SINE MIR 89 200 -62 352 270 178 33 chr15 50698906 50699058 -50681463 - MER5A DNA MER1_type -9 180 7 442 256 58 8 chr15 50699626 50699747 -50680774 + L2 LINE L2 3149 3275 -38 1963 135 10 0 chr15 50700112 50700400 -50680121 - AluSg SINE Alu -14 296 6 292 309 45 0 chr15 50701367 50701477 -50679044 - L2 LINE L2 0 3313 3199 1437 175 4 0 chr15 50701796 50702047 -50678474 + L1PA13 LINE L1 3704 3955 -2191 1376 107 0 0 chr15 50702064 50702241 -50678280 - AluSx SINE Alu -78 234 58 253 140 0 0 chr15 50702241 50702291 -50678230 + Alu SINE Alu 251 300 0 6862 171 23 14 chr15 50702298 50704485 -50676036 + L1PA13 LINE L1 3958 6163 0 31 0 0 0 chr15 50704492 50704523 -50675998 + AT_rich Low_complexity Low_complexity 1 31 0 1138 243 36 45 chr15 50704578 50704998 -50675523 + L1M4 LINE L1 2110 2525 -3621 235 211 13 26 chr15 50705012 50705088 -50675433 + L1M4 LINE L1 4975 5049 -1097 23 0 0 0 chr15 50705130 50705153 -50675368 + AT_rich Low_complexity Low_complexity 1 23 0 491 317 102 44 chr15 50705293 50705766 -50674755 + L1M4 LINE L1 4622 5121 -1025 1979 156 3 0 chr15 50705771 50706073 -50674448 + AluSx SINE Alu 1 303 -9 6057 111 39 0 chr15 50706155 50707098 -50673423 - L1PA11 LINE L1 0 6174 5215 19959 177 22 101 chr15 50707102 50708473 -50672048 - L1P3 LINE L1 -813 5648 4171 2435 112 89 63 chr15 50708473 50708946 -50671575 + LTR21A LTR ERV1 2 486 -19 19959 177 22 101 chr15 50708946 50713210 -50667311 - L1P3 LINE L1 -2290 4171 3 209 306 65 37 chr15 50713660 50713743 -50666778 + MIR SINE MIR 72 160 -102 1698 215 5 11 chr15 50713743 50714110 -50666411 + MLT1A1 LTR MaLR 1 365 0 209 306 65 37 chr15 50714110 50714134 -50666387 + MIR SINE MIR 160 182 -80 2221 143 29 61 chr15 50714429 50714871 -50665650 + MSTA LTR MaLR 1 428 0 248 459 4 0 chr15 50714917 50715163 -50665358 - L2 LINE L2 -221 3051 2805 207 100 0 0 chr15 50715362 50715392 -50665129 + (TATATG)n Simple_repeat Simple_repeat 6 35 0 644 346 77 35 chr15 50715538 50716173 -50664348 - L2 LINE L2 -663 2651 1990 261 0 0 0 chr15 50716391 50716420 -50664101 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2181 93 7 0 chr15 50716424 50716704 -50663817 - AluSc SINE Alu -25 284 3 2196 113 0 0 chr15 50717266 50717599 -50662922 + AluSx SINE Alu 1 333 0 264 234 195 0 chr15 50717899 50717976 -50662545 + L2 LINE L2 3190 3281 -32 830 256 177 67 chr15 50718268 50718804 -50661717 + MLT1H1 LTR MaLR 1 555 0 2698 94 6 0 chr15 50719372 50719734 -50660787 + THE1B LTR MaLR 1 364 0 3723 102 2 4 chr15 50720164 50720676 -50659845 + MER9 LTR ERVK 1 511 0 497 297 174 27 chr15 50721030 50721444 -50659077 + L2 LINE L2 2222 2696 -618 907 247 57 4 chr15 50721467 50721694 -50658827 + MIR SINE MIR 2 240 -22 184 336 100 74 chr15 50721880 50722219 -50658302 + L2 LINE L2 2910 3257 -15 207 323 182 20 chr15 50722355 50722454 -50658067 - MIR SINE MIR -64 144 30 433 325 15 45 chr15 50724282 50724482 -50656039 - MIR SINE MIR -46 216 23 2198 107 13 13 chr15 50724501 50724810 -50655711 - AluSx SINE Alu -3 309 1 321 292 0 0 chr15 50725385 50725457 -50655064 - L2 LINE L2 -5 3308 3237 272 352 62 31 chr15 50726196 50726324 -50654197 + MIR3 SINE MIR 15 146 -62 278 341 0 0 chr15 50726483 50726568 -50653953 - MIR SINE MIR -130 132 48 483 329 58 75 chr15 50727645 50728004 -50652517 + L2 LINE L2 2920 3272 0 1819 139 80 0 chr15 50728156 50728443 -50652078 - AluSq SINE Alu -3 310 1 289 300 62 12 chr15 50728468 50728628 -50651893 + L1ME LINE L1 5651 5818 -303 26 0 0 0 chr15 50728805 50728831 -50651690 + AT_rich Low_complexity Low_complexity 1 26 0 530 297 138 22 chr15 50729393 50729625 -50650896 - MIR SINE MIR -3 259 1 356 331 27 49 chr15 50731782 50731966 -50648555 + MER5A DNA MER1_type 1 180 -9 319 304 161 19 chr15 50731968 50732129 -50648392 - MER5A DNA MER1_type -5 184 1 3177 113 64 23 chr15 50733962 50734526 -50645995 - LTR18B LTR ERVL -27 587 1 2970 207 4 2 chr15 50734714 50735264 -50645257 - HERVL18 LTR ERVL -2556 3491 2941 1448 161 4 4 chr15 50735300 50735542 -50644979 - HERVL18 LTR ERVL -3086 2961 2720 * 8733 195 37 10 chr15 50735541 50737830 -50642691 - HERVL18 LTR ERVL -3595 2452 4 3423 110 45 23 chr15 50737865 50738439 -50642082 - LTR18B LTR ERVL -27 587 1 1783 84 26 0 chr15 50739037 50739264 -50641257 - AluSc SINE Alu -76 233 1 193 264 57 0 chr15 50739276 50739329 -50641192 + MIR3 SINE MIR 101 156 -52 256 149 45 45 chr15 50739413 50739480 -50641041 + L1MC/D LINE L1 5834 5900 -1908 1453 180 88 0 chr15 50739965 50740126 -50640395 - AluJb SINE Alu -11 301 107 227 54 27 0 chr15 50740126 50740163 -50640358 + (TTTG)n Simple_repeat Simple_repeat 4 41 0 1453 180 88 0 chr15 50740163 50740262 -50640259 - AluJb SINE Alu -205 107 18 397 301 19 0 chr15 50740881 50740984 -50639537 - L2 LINE L2 0 3272 3168 420 272 78 42 chr15 50741019 50741210 -50639311 - MIR SINE MIR 0 262 65 27 29 0 0 chr15 50741335 50741369 -50639152 + AT_rich Low_complexity Low_complexity 1 34 0 1855 118 62 54 chr15 50741664 50742036 -50638485 + THE1C LTR MaLR 1 375 0 1716 156 58 0 chr15 50742408 50742684 -50637837 - AluJb SINE Alu -20 292 1 3489 133 35 68 chr15 50742852 50743303 -50637218 - L1MA9 LINE L1 -48 6264 5845 297 0 0 0 chr15 50743303 50743336 -50637185 + (TG)n Simple_repeat Simple_repeat 2 34 0 3489 133 35 68 chr15 50743336 50743618 -50636903 - L1MA9 LINE L1 -467 5845 5555 698 247 91 5 chr15 50743778 50743997 -50636524 - MIR SINE MIR -10 252 15 234 334 194 22 chr15 50746532 50746897 -50633624 - L2 LINE L2 -1576 1738 1311 636 244 110 34 chr15 50746941 50747210 -50633311 + L1ME4a LINE L1 5507 5807 -314 2249 97 0 22 chr15 50747210 50747521 -50633000 + AluY SINE Alu 1 304 -7 636 244 110 34 chr15 50747521 50747579 -50632942 + L1ME4a LINE L1 5807 5859 -262 282 284 29 0 chr15 50748301 50748403 -50632118 + Charlie8 DNA MER1_type 387 491 -1926 21 36 0 0 chr15 50748515 50748543 -50631978 + AT_rich Low_complexity Low_complexity 1 28 0 1761 75 83 0 chr15 50748903 50749144 -50631377 + AluSp SINE Alu 31 291 -22 461 282 245 28 chr15 50749443 50749766 -50630755 - L2 LINE L2 -26 3287 2895 1273 167 46 49 chr15 50749768 50750097 -50630424 + L1MA9 LINE L1 5982 6309 -3 252 130 0 0 chr15 50750284 50750330 -50630191 + (TG)n Simple_repeat Simple_repeat 2 47 0 270 81 0 0 chr15 50750501 50750538 -50629983 + (ATG)n Simple_repeat Simple_repeat 1 37 0 258 302 38 9 chr15 50750883 50750989 -50629532 + MER103 DNA DNA 13 121 -45 677 227 0 8 chr15 50751157 50751289 -50629232 + FLAM_A SINE Alu 1 131 -2 633 255 82 25 chr15 50751471 50751667 -50628854 - L2 LINE L2 -1 3312 3106 206 229 16 82 chr15 50751663 50751724 -50628797 + MIR3 SINE MIR 117 173 -35 * 330 267 51 56 chr15 50751734 50751929 -50628592 - MLT1J LTR MaLR -25 486 293 28 48 0 0 chr15 50753213 50753255 -50627266 + AT_rich Low_complexity Low_complexity 1 42 0 2154 109 61 0 chr15 50753361 50753654 -50626867 - AluSx SINE Alu -1 311 1 260 234 9 27 chr15 50753819 50753930 -50626591 + L1MC5 LINE L1 7807 7915 -46 30685 103 13 55 chr15 50754438 50758295 -50622226 + L1PA7 LINE L1 9 3485 -2669 2329 103 0 0 chr15 50758295 50758595 -50621926 + AluY SINE Alu 1 300 -11 30685 103 13 55 chr15 50758595 50761158 -50619363 + L1PA7 LINE L1 3485 6152 -2 6686 177 59 22 chr15 50761475 50762986 -50617535 - L1MC3 LINE L1 -8 7777 6212 2105 140 31 3 chr15 50762996 50763354 -50617167 - MER39 LTR ERV1 0 707 340 895 210 73 5 chr15 50763387 50763606 -50616915 - MER39 LTR ERV1 -455 252 19 811 207 44 16 chr15 50763615 50763886 -50616635 - L1MC2 LINE L1 -189 6155 5916 1563 186 7 28 chr15 50764100 50764385 -50616136 + AluJo SINE Alu 1 279 -33 328 329 45 26 chr15 50764456 50764611 -50615910 + MIR3 SINE MIR 43 200 -8 1453 86 5 0 chr15 50765668 50765866 -50614655 - L1PA12 LINE L1 -4 6164 5966 21 0 0 0 chr15 50766354 50766375 -50614146 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr15 50818777 50818802 -50561719 + AT_rich Low_complexity Low_complexity 1 25 0 6709 194 17 23 chr15 50819265 50822429 -50558092 - L1MA3 LINE L1 0 7724 4585 * 6729 133 19 130 chr15 50822397 50823962 -50556559 - L1P LINE L1 -1252 6313 4922 2883 221 77 29 chr15 50823963 50825281 -50555240 - MER52A LTR ERV1 0 1755 235 9955 167 21 11 chr15 50825281 50826955 -50553566 - L1MA3 LINE L1 -5862 1703 14 3976 183 55 11 chr15 50827025 50827879 -50552642 - L1MA8 LINE L1 -24 6267 5376 775 144 72 0 chr15 50828244 50828397 -50552124 + L1MA7 LINE L1 6122 6285 -6 612 248 115 32 chr15 50828918 50829136 -50551385 + MIR SINE MIR 22 257 -5 416 319 98 49 chr15 50831717 50832146 -50548375 - L1MC4a LINE L1 -1755 6053 5604 2149 73 7 0 chr15 50833348 50833623 -50546898 + AluY SINE Alu 35 311 0 21 0 0 0 chr15 50834192 50834213 -50546308 + AT_rich Low_complexity Low_complexity 1 21 0 457 262 24 8 chr15 50835083 50835209 -50545312 + MIR3 SINE MIR 81 208 0 2365 84 3 0 chr15 50835820 50836116 -50544405 - AluSc SINE Alu -12 297 1 279 377 115 6 chr15 50836161 50836344 -50544177 + MIR SINE MIR 36 238 -24 22 56 0 0 chr15 50836362 50836398 -50544123 + AT_rich Low_complexity Low_complexity 1 36 0 247 326 14 72 chr15 50836406 50836544 -50543977 + L2 LINE L2 3142 3271 -1 462 254 51 37 chr15 50836587 50836756 -50543765 - MER5B DNA MER1_type 0 178 24 1699 187 0 7 chr15 50837191 50837491 -50543030 - AluJo SINE Alu -10 302 5 455 323 15 8 chr15 50838640 50838770 -50541751 - L2 LINE L2 0 3313 3183 381 244 60 65 chr15 50839263 50839431 -50541090 + MIR SINE MIR 46 212 -50 258 324 65 9 chr15 50839691 50839799 -50540722 + MIR SINE MIR 23 136 -126 275 305 78 43 chr15 50839815 50840185 -50540336 - L1M4 LINE L1 -2412 3734 3352 333 282 70 6 chr15 50840293 50840449 -50540072 - L1M4 LINE L1 -2949 3197 3032 4161 169 13 3 chr15 50840714 50841473 -50539048 - L1P LINE L1 -1311 4835 4069 1628 81 22 0 chr15 50843123 50843346 -50537175 + L1PA11 LINE L1 5939 6166 -8 26 30 0 0 chr15 50844618 50844651 -50535870 + AT_rich Low_complexity Low_complexity 1 33 0 186 284 95 42 chr15 50845856 50845951 -50534570 - L2 LINE L2 -1 3271 3172 2419 83 0 6 chr15 50847171 50847483 -50533038 - AluY SINE Alu -1 310 1 550 314 67 27 chr15 50847659 50847882 -50532639 + MIR SINE MIR 24 255 -7 25 31 0 0 chr15 50848756 50848788 -50531733 + AT_rich Low_complexity Low_complexity 1 32 0 312 316 148 32 chr15 50849162 50849472 -50531049 - L3 LINE CR1 -11 1566 1221 22 0 0 0 chr15 50850047 50850069 -50530452 + AT_rich Low_complexity Low_complexity 1 22 0 215 308 103 20 chr15 50851022 50851168 -50529353 - MIR3 SINE MIR -31 177 20 3419 130 54 129 chr15 50851396 50852243 -50528278 - LTR1 LTR ERV1 0 785 2 215 208 21 0 chr15 50852534 50852582 -50527939 + MIR SINE MIR 106 154 -108 665 249 8 10 chr15 50852584 50852832 -50527689 - MER90 LTR ERV1 0 614 311 1227 198 86 0 chr15 50852832 50853075 -50527446 + Tigger7 DNA MER2_type 1 264 -469 427 240 10 31 chr15 50853112 50853208 -50527313 + Tigger7 DNA MER2_type 2389 2482 -5 895 300 36 4 chr15 50853220 50853500 -50527021 - MER90 LTR ERV1 -309 305 17 2036 126 0 17 chr15 50854800 50855094 -50525427 - AluSx SINE Alu -23 289 1 384 291 50 28 chr15 50855163 50855304 -50525217 - MIR SINE MIR -42 220 77 1638 234 23 3 chr15 50855306 50855657 -50524864 - MLT1A1 LTR MaLR -2 363 6 2151 129 36 33 chr15 50855714 50856077 -50524444 - THE1B LTR MaLR 0 364 1 228 303 15 0 chr15 50856494 50856560 -50523961 - L2 LINE L2 -18 3295 3229 357 181 143 9 chr15 50856655 50856760 -50523761 - MER63 DNA MER1_type -318 743 625 324 232 11 42 chr15 50856955 50857050 -50523471 - L1MC4 LINE L1 -1337 6705 6614 299 228 35 0 chr15 50857075 50857189 -50523332 + (TA)n Simple_repeat Simple_repeat 1 118 0 2161 71 4 7 chr15 50857939 50858268 -50522253 - AluY SINE Alu 0 328 1 226 215 31 15 chr15 50861495 50861560 -50518961 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 29 0 0 0 chr15 50861608 50861637 -50518884 + AT_rich Low_complexity Low_complexity 1 29 0 1648 215 28 85 chr15 50863067 50863667 -50516854 - L1ME1 LINE L1 -4 6231 5666 198 0 0 0 chr15 50863703 50863725 -50516796 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1073 218 31 8 chr15 50863745 50864006 -50516515 - L1ME1 LINE L1 -1994 4221 3955 367 349 62 25 chr15 50864034 50864275 -50516246 - L1ME1 LINE L1 -4727 1488 1239 1747 109 69 0 chr15 50864419 50864693 -50515828 - L1P4 LINE L1 -557 5609 5317 1057 160 0 36 chr15 50864696 50864890 -50515631 - L1PA11 LINE L1 0 6174 5988 3025 260 35 52 chr15 50864890 50865818 -50514703 - L1ME1 LINE L1 -5198 1198 293 404 39 0 0 chr15 50865818 50865869 -50514652 - L1PA3 LINE L1 -3 6152 6102 3025 260 35 52 chr15 50865869 50866124 -50514397 - L1ME1 LINE L1 -6103 293 35 23 54 0 0 chr15 50866237 50866274 -50514247 + AT_rich Low_complexity Low_complexity 1 37 0 428 245 117 61 chr15 50866275 50866471 -50514050 + L1ME1 LINE L1 395 601 -5795 329 255 21 21 chr15 50867413 50867507 -50513014 - MIR3 SINE MIR -7 201 108 22 35 0 0 chr15 50867765 50867794 -50512727 + AT_rich Low_complexity Low_complexity 1 29 0 192 304 14 29 chr15 50868616 50868685 -50511836 - L2 LINE L2 0 3272 3205 202 307 125 0 chr15 50868746 50868834 -50511687 + MIR SINE MIR 45 143 -65 180 0 0 0 chr15 50869324 50869344 -50511177 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 229 220 0 0 chr15 50871301 50871351 -50509170 + L1ME1 LINE L1 2037 2086 -4310 251 180 20 0 chr15 50871478 50871528 -50508993 - Alu SINE Alu -251 51 1 753 216 11 5 chr15 50871583 50871773 -50508748 + L1ME1 LINE L1 2186 2376 -4020 480 207 17 17 chr15 50871848 50871964 -50508557 + L1ME1 LINE L1 5418 5533 -702 305 287 33 40 chr15 50871988 50872235 -50508286 - L1MEc LINE L1 -4225 2171 1926 * 1407 247 117 70 chr15 50872231 50872875 -50507646 + L1ME1 LINE L1 5557 6230 -5 406 176 14 0 chr15 50874466 50874540 -50505981 + MER116 DNA Mariner 6 80 0 457 279 26 64 chr15 50875778 50876011 -50504510 + L1MC4 LINE L1 5600 5823 -1985 198 71 0 0 chr15 50876298 50876326 -50504195 + (TC)n Simple_repeat Simple_repeat 1 28 0 327 233 58 10 chr15 50876346 50876449 -50504072 - L1MC4 LINE L1 -1321 6721 6614 327 277 0 43 chr15 50876375 50876469 -50504052 + L1MC4 LINE L1 6614 6703 -1339 315 167 0 17 chr15 50876463 50876523 -50503998 - L1MC4 LINE L1 -1339 6703 6645 * 949 193 0 6 chr15 50876529 50876700 -50503821 - AluSg/x SINE Alu -28 284 115 1623 173 14 17 chr15 50879004 50879299 -50501222 + AluJo SINE Alu 3 296 -16 1996 103 0 61 chr15 50879826 50880156 -50500365 - AluY SINE Alu -1 310 1 515 256 83 42 chr15 50880744 50880912 -50499609 - MIR SINE MIR -38 224 50 623 259 45 8 chr15 50880916 50881178 -50499343 - L1MB7 LINE L1 -212 5968 5697 4776 183 107 2 chr15 50881379 50882302 -50498219 - LTR28 LTR ERV1 0 1020 1 216 318 0 0 chr15 50882323 50882408 -50498113 + (TA)n Simple_repeat Simple_repeat 1 85 0 315 122 0 0 chr15 50882755 50882804 -50497717 + (TG)n Simple_repeat Simple_repeat 2 50 0 183 315 62 62 chr15 50882816 50882946 -50497575 - MIR3 SINE MIR -37 171 42 196 264 27 82 chr15 50883085 50883195 -50497326 - MIR SINE MIR -37 225 122 37 62 0 0 chr15 50883814 50883879 -50496642 + AT_rich Low_complexity Low_complexity 1 65 0 23 0 0 0 chr15 50884787 50884810 -50495711 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr15 50884867 50884913 -50495608 + AT_rich Low_complexity Low_complexity 1 46 0 2048 135 0 10 chr15 50884936 50885240 -50495281 - AluSx SINE Alu -9 303 3 301 273 13 0 chr15 50886726 50886803 -50493718 - MLT1J LTR MaLR -325 186 109 324 336 38 0 chr15 50888605 50888736 -50491785 - LTR67 LTR ERVL 0 557 422 485 220 57 21 chr15 50889330 50889471 -50491050 + L1MC3 LINE L1 7640 7785 0 388 234 73 48 chr15 50890660 50890784 -50489737 - MIR SINE MIR -34 228 102 1519 258 107 43 chr15 50890795 50891496 -50489025 - MER20B DNA MER1_type -1 782 37 455 257 66 7 chr15 50891628 50891764 -50488757 - Charlie4 DNA MER1_type 0 1961 1818 469 190 149 0 chr15 50891770 50891891 -50488630 - Charlie4 DNA MER1_type -1708 253 115 277 183 52 0 chr15 50891939 50892092 -50488429 + (TA)n Simple_repeat Simple_repeat 2 162 0 983 252 78 90 chr15 50892434 50893061 -50487460 - HsTC2a DNA Tc2 -1239 661 41 8107 26 7 0 chr15 50893061 50894804 -50485717 - L1PA3 LINE L1 -2 6153 4405 983 252 78 90 chr15 50894804 50894842 -50485679 - HsTC2a DNA Tc2 -1859 41 4 205 364 27 32 chr15 50895072 50895259 -50485262 + L2 LINE L2 2827 3012 -260 272 293 50 66 chr15 50897534 50897715 -50482806 - MIR3 SINE MIR -23 185 8 212 407 21 7 chr15 50897950 50898090 -50482431 - L2 LINE L2 -567 2747 2606 187 394 92 35 chr15 50900255 50900397 -50480124 + L2 LINE L2 3123 3272 0 363 192 0 0 chr15 50900423 50900501 -50480020 - L1MA8 LINE L1 -5 6286 6209 637 244 23 60 chr15 50902061 50902278 -50478243 - MER63A DNA MER1_type 0 210 2 858 257 16 23 chr15 50902900 50903207 -50477314 + AluJb SINE Alu 6 310 -2 477 270 67 113 chr15 50903851 50904151 -50476370 + L2 LINE L2 3028 3313 0 255 260 52 0 chr15 50904174 50904251 -50476270 - MIR SINE MIR 0 262 182 2060 169 37 27 chr15 50904252 50904669 -50475852 + MSTB LTR MaLR 1 374 0 1270 219 39 42 chr15 50905750 50906033 -50474488 - AluJo SINE Alu -30 282 1 428 263 0 0 chr15 50908160 50908240 -50472281 + MER5A DNA MER1_type 106 185 -4 205 231 246 0 chr15 50908244 50908309 -50472212 - MIR SINE MIR -62 146 66 998 194 22 0 chr15 50908962 50909142 -50471379 + MER5A DNA MER1_type 6 189 0 259 313 94 62 chr15 50909143 50909271 -50471250 - MIR3 SINE MIR -63 145 14 6815 69 28 9 chr15 50909669 50911215 -50469306 - L1PA7 LINE L1 0 6154 4593 254 108 0 0 chr15 50911215 50911252 -50469269 + L1PA7 LINE L1 4557 4593 -1553 434 356 19 6 chr15 50911433 50911593 -50468928 - L3 LINE CR1 -27 1550 1389 1628 117 19 30 chr15 50912024 50912290 -50468231 - MER4A LTR ERV1 -29 635 373 767 185 58 58 chr15 50912424 50912629 -50467892 - MER58A DNA MER1_type 0 224 20 22 0 0 0 chr15 50912778 50912800 -50467721 + AT_rich Low_complexity Low_complexity 1 22 0 301 279 0 0 chr15 50912828 50912914 -50467607 + MER67D LTR ERV1 3 88 -426 646 102 0 0 chr15 50912946 50913034 -50467487 + MER67D LTR ERV1 63 150 -364 432 254 82 0 chr15 50915336 50915458 -50465063 - L2 LINE L2 0 3313 3182 1815 179 14 24 chr15 50915511 50915880 -50464641 - MLT1A1 LTR MaLR 0 365 1 5413 157 22 12 chr15 50916754 50918266 -50462255 - L1MA8 LINE L1 0 6291 4767 391 254 70 9 chr15 50918916 50919030 -50461491 - MIR3 SINE MIR -3 205 85 246 148 0 0 chr15 50919122 50919176 -50461345 + (TA)n Simple_repeat Simple_repeat 1 54 0 189 107 0 0 chr15 50919171 50919199 -50461322 + (CA)n Simple_repeat Simple_repeat 2 29 0 * 201 325 12 0 chr15 50920543 50920623 -50459898 + (TG)n Simple_repeat Simple_repeat 2 82 0 3422 151 6 32 chr15 50922169 50922827 -50457694 + L1MA8 LINE L1 5650 6290 -1 184 206 87 130 chr15 50922872 50922964 -50457557 + MIR SINE MIR 5 92 -170 265 361 44 13 chr15 50923412 50923570 -50456951 + L2 LINE L2 2624 2786 -528 555 348 138 33 chr15 50923634 50924459 -50456062 + L2 LINE L2 1817 2728 -586 261 275 43 14 chr15 50924992 50925061 -50455460 + L2 LINE L2 3193 3263 -9 5285 169 18 33 chr15 50925986 50927205 -50453316 - L1MA8 LINE L1 -1 6290 5088 30 59 0 0 chr15 50927715 50927766 -50452755 + AT_rich Low_complexity Low_complexity 1 51 0 188 306 28 14 chr15 50931779 50931851 -50448670 + MIR SINE MIR 77 149 -59 419 103 0 0 chr15 50932986 50933044 -50447477 + Alu SINE Alu 235 292 -20 212 320 143 40 chr15 50933058 50933233 -50447288 - L2 LINE L2 -1299 2015 1823 1467 143 27 0 chr15 50933240 50933464 -50447057 - MER30 DNA MER1_type 0 230 1 404 269 25 70 chr15 50933466 50933708 -50446813 + L1ME4a LINE L1 5755 5985 -136 2020 94 0 0 chr15 50933797 50934085 -50446436 - L1PA6 LINE L1 -2 6152 5865 214 271 14 14 chr15 50935012 50935082 -50445439 + GA-rich Low_complexity Low_complexity 2 71 0 525 250 120 26 chr15 50935191 50935383 -50445138 - MER63A DNA MER1_type 0 210 1 1455 219 133 27 chr15 50935662 50935913 -50444608 - MER69 DNA AcHobo -202 2324 2101 1647 179 58 128 chr15 50935913 50936466 -50444055 - MER67D LTR ERV1 0 514 1 1455 219 133 27 chr15 50936466 50936816 -50443705 - MER69 DNA AcHobo -425 2101 1659 440 229 107 15 chr15 50936813 50936944 -50443577 - MER69 DNA AcHobo -1083 143 1 * 1204 225 51 29 chr15 50937117 50937432 -50443089 + MER58B DNA MER1_type 20 341 0 180 0 0 0 chr15 50937465 50937485 -50443036 + (T)n Simple_repeat Simple_repeat 1 20 0 36 31 0 31 chr15 50937498 50937536 -50442985 + AT_rich Low_complexity Low_complexity 1 38 -25 1472 149 16 0 chr15 50937536 50937791 -50442730 - L1MA4 LINE L1 -14 6286 6028 36 31 0 31 chr15 50937791 50937817 -50442704 + AT_rich Low_complexity Low_complexity 38 63 0 228 148 0 93 chr15 50938319 50938373 -50442148 - MLT1J LTR MaLR -85 426 378 327 303 79 12 chr15 50938693 50938858 -50441663 - MLT1J LTR MaLR -335 176 1 294 317 0 48 chr15 50939548 50939652 -50440869 - MIR3 SINE MIR -11 197 99 400 283 138 6 chr15 50940215 50940374 -50440147 + MIR SINE MIR 3 182 -80 324 48 0 0 chr15 50940691 50940733 -50439788 + (TG)n Simple_repeat Simple_repeat 1 42 0 219 267 0 17 chr15 50941008 50941068 -50439453 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 1101 281 107 42 chr15 50943292 50943769 -50436752 + L2 LINE L2 1331 1838 -1476 1469 222 132 66 chr15 50943801 50944330 -50436191 - L1ME1 LINE L1 -21 6145 5653 186 43 0 0 chr15 50944330 50944353 -50436168 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1469 222 132 66 chr15 50944353 50944545 -50435976 - L1ME1 LINE L1 -513 5653 5475 979 144 22 0 chr15 50944545 50944725 -50435796 - L1MA8 LINE L1 -5 6286 6103 1469 222 132 66 chr15 50944725 50945418 -50435103 - L1ME1 LINE L1 -691 5475 4532 1478 286 127 23 chr15 50945619 50946224 -50434297 + L2 LINE L2 2132 2799 -515 511 232 221 6 chr15 50946305 50946486 -50434035 + L2 LINE L2 3094 3313 0 373 320 49 25 chr15 50947031 50947234 -50433287 - MIR SINE MIR -53 209 2 2272 91 0 3 chr15 50947246 50947553 -50432968 - AluSx SINE Alu -6 306 1 365 119 0 0 chr15 50947589 50947648 -50432873 + L1PA16 LINE L1 5418 5476 -692 5991 155 10 4 chr15 50947658 50948026 -50432495 - L1PB1 LINE L1 -2 6149 5785 216 0 0 0 chr15 50948026 50948050 -50432471 + (TA)n Simple_repeat Simple_repeat 2 25 0 5991 155 10 4 chr15 50948050 50949307 -50431214 - L1PB1 LINE L1 -366 5785 4518 3937 140 56 1 chr15 50949307 50949970 -50430551 + L1PA16 LINE L1 5456 6157 -9 2132 70 0 0 chr15 50950119 50950378 -50430143 + AluY SINE Alu 39 297 -14 414 318 23 28 chr15 50950462 50950676 -50429845 - L1M4 LINE L1 -748 5398 5186 838 224 33 38 chr15 50950754 50950964 -50429557 + AluJo SINE Alu 86 294 -18 810 288 97 46 chr15 50951267 50951618 -50428903 + L2 LINE L2 2431 2799 -515 511 232 221 6 chr15 50951699 50951880 -50428641 + L2 LINE L2 3094 3313 0 373 320 49 25 chr15 50952425 50952628 -50427893 - MIR SINE MIR -53 209 2 1883 108 0 4 chr15 50952640 50952917 -50427604 - AluSx SINE Alu -6 306 31 244 125 0 89 chr15 50952994 50953050 -50427471 + L1P4 LINE L1 5429 5479 -686 558 182 88 0 chr15 50953050 50953231 -50427290 - L1PB1 LINE L1 -2 6149 5953 24 53 0 0 chr15 50953502 50953540 -50426981 + AT_rich Low_complexity Low_complexity 1 38 0 2068 73 0 4 chr15 50953675 50953935 -50426586 + AluY SINE Alu 39 297 -14 414 318 23 28 chr15 50954019 50954233 -50426288 - L1M4 LINE L1 -748 5398 5186 838 224 33 38 chr15 50954311 50954521 -50426000 + AluJo SINE Alu 86 294 -18 209 0 97 0 chr15 50954716 50954747 -50425774 + T-rich Low_complexity Low_complexity 3 36 0 2171 95 10 0 chr15 50955082 50955376 -50425145 - AluSx SINE Alu -15 297 1 1729 194 25 73 chr15 50955603 50956112 -50424409 - MER31A LTR ERV1 0 485 1 1098 301 77 20 chr15 50956610 50957049 -50423472 + L2 LINE L2 2398 2861 -453 200 169 119 34 chr15 50957143 50957202 -50423319 + L2 LINE L2 3250 3313 0 254 307 30 10 chr15 50957322 50957423 -50423098 + MLT1J2 LTR MaLR 78 180 -270 340 243 19 58 chr15 50957507 50957610 -50422911 + MLT1I LTR MaLR 323 407 -2 229 342 62 26 chr15 50957650 50957843 -50422678 + L2 LINE L2 2699 2898 -416 350 344 39 0 chr15 50958235 50958363 -50422158 + MIR SINE MIR 1 133 -129 315 266 13 0 chr15 50958781 50958860 -50421661 - L2 LINE L2 -4 3309 3230 22 0 0 0 chr15 50958870 50958892 -50421629 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr15 50959340 50959361 -50421160 + AT_rich Low_complexity Low_complexity 1 21 0 238 229 0 0 chr15 50960110 50960158 -50420363 - L1ME LINE L1 -386 5735 5688 330 273 94 31 chr15 50960161 50960289 -50420232 + MLT1J LTR MaLR 181 316 -195 61 58 0 0 chr15 50960999 50961102 -50419419 + AT_rich Low_complexity Low_complexity 1 103 0 313 322 150 11 chr15 50961391 50961571 -50418950 + L1ME3A LINE L1 3639 3843 -2303 318 313 85 20 chr15 50961647 50961893 -50418628 + L1ME3A LINE L1 5620 5881 -290 2196 76 3 13 chr15 50961935 50962237 -50418284 - AluY SINE Alu -12 299 1 229 400 33 0 chr15 50963606 50963696 -50416825 + L2 LINE L2 3203 3295 -18 288 168 30 0 chr15 50964201 50964302 -50416219 + (TA)n Simple_repeat Simple_repeat 1 104 0 356 266 77 65 chr15 50965028 50965197 -50415324 - L2 LINE L2 -3 3310 3140 180 0 0 0 chr15 50965372 50965392 -50415129 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 615 283 80 12 chr15 50965550 50965801 -50414720 + L2 LINE L2 1910 2177 -1137 513 308 25 43 chr15 50965983 50966203 -50414318 + MIR SINE MIR 2 213 -49 2439 168 27 0 chr15 50966767 50967171 -50413350 + MSTC LTR MaLR 1 415 -13 2089 110 0 3 chr15 50967313 50967605 -50412916 - AluSx SINE Alu -21 291 1 25 31 0 0 chr15 50967627 50967659 -50412862 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr15 50967668 50967711 -50412810 + AT_rich Low_complexity Low_complexity 1 43 0 427 284 55 46 chr15 50967873 50968352 -50412169 - L1ME4a LINE L1 -157 5964 5481 1244 246 13 43 chr15 50968352 50968726 -50411795 - MLT1A1 LTR MaLR 0 365 3 427 284 55 46 chr15 50968726 50968847 -50411674 - L1ME4a LINE L1 -640 5481 5363 27 62 0 0 chr15 50969419 50969467 -50411054 + AT_rich Low_complexity Low_complexity 1 48 0 219 242 0 16 chr15 50969795 50969857 -50410664 + (TATG)n Simple_repeat Simple_repeat 3 63 0 10994 194 39 25 chr15 50969990 50972558 -50407963 - L1 LINE L1 -1215 5633 3030 1768 250 70 68 chr15 50972556 50973580 -50406941 - L1 LINE L1 -4230 2619 1594 * 477 346 76 39 chr15 50974074 50974508 -50406013 - L1 LINE L1 -5830 949 500 537 212 9 18 chr15 50974567 50974680 -50405841 + MER5A DNA MER1_type 54 165 -24 2121 129 0 0 chr15 50975050 50975353 -50405168 - AluSq SINE Alu -8 305 3 416 320 103 5 chr15 50975450 50975653 -50404868 - L2 LINE L2 -463 2851 2629 814 165 0 19 chr15 50977321 50977479 -50403042 - L1MA10 LINE L1 -1 6333 6179 201 74 0 0 chr15 50977695 50977722 -50402799 + (A)n Simple_repeat Simple_repeat 1 27 0 21 57 0 0 chr15 50979024 50979059 -50401462 + AT_rich Low_complexity Low_complexity 1 35 0 271 379 11 52 chr15 50979377 50979551 -50400970 + L2 LINE L2 3106 3272 0 956 219 20 0 chr15 50979699 50979900 -50400621 + MER3 DNA MER1_type 1 205 -4 270 233 326 12 chr15 50979987 50980073 -50400448 + MER96 DNA MER1_type? 63 175 0 31 88 0 0 chr15 50982756 50982836 -50397685 + AT_rich Low_complexity Low_complexity 1 80 0 1954 149 33 54 chr15 50982837 50983266 -50397255 - L1MA8 LINE L1 -5 6286 5867 2798 129 20 22 chr15 50983679 50984184 -50396337 + L1MA8 LINE L1 5783 6286 -5 275 266 26 18 chr15 50984532 50984645 -50395876 - L1ME3A LINE L1 -228 5942 5829 436 212 0 61 chr15 50984726 50984825 -50395696 + MER3 DNA MER1_type 1 93 -116 25 0 0 0 chr15 50984831 50984856 -50395665 + AT_rich Low_complexity Low_complexity 1 25 0 433 290 84 55 chr15 50984897 50985189 -50395332 - LTR16A LTR ERVL -69 381 59 7357 188 112 22 chr15 50985189 50986799 -50393722 - MER52A LTR ERV1 0 1755 1 433 290 84 55 chr15 50986799 50986855 -50393666 - LTR16A LTR ERVL -391 59 6 601 302 1 42 chr15 50986867 50987154 -50393367 - L1ME3A LINE L1 -337 5825 5547 356 263 0 0 chr15 50987335 50987411 -50393110 + MLT1E1 LTR MaLR 53 128 -465 637 258 24 0 chr15 50987446 50987613 -50392908 + MLT1E1 LTR MaLR 125 295 -359 1037 237 16 16 chr15 50987642 50987895 -50392626 + MLT1E1 LTR MaLR 401 653 -1 23 0 0 0 chr15 50988182 50988205 -50392316 + AT_rich Low_complexity Low_complexity 1 23 0 396 163 62 0 chr15 50988519 50988599 -50391922 - LTR16C LTR ERVL 0 491 407 852 263 40 43 chr15 50988797 50989101 -50391420 + MLT1C LTR MaLR 53 355 -112 605 217 109 59 chr15 50989096 50989339 -50391182 - MLT1G1 LTR MaLR -297 298 1 * 322 217 0 0 chr15 50989345 50989405 -50391116 - MLT1J1 LTR MaLR -384 62 3 1650 194 45 20 chr15 50989486 50989842 -50390679 - MLT1A1 LTR MaLR 0 365 1 381 311 37 70 chr15 50990020 50990261 -50390260 - L3 LINE CR1 -157 1420 1188 27 0 0 0 chr15 50990498 50990525 -50389996 + AT_rich Low_complexity Low_complexity 1 27 0 210 330 57 9 chr15 50990581 50990687 -50389834 - MIR SINE MIR -64 144 34 25 0 0 0 chr15 50990721 50990746 -50389775 + AT_rich Low_complexity Low_complexity 1 25 0 370 319 0 36 chr15 50991541 50991679 -50388842 - MER5A DNA MER1_type -56 133 1 4510 188 34 17 chr15 50991801 50993647 -50386874 - L1MA8 LINE L1 -4 6287 4407 12300 194 34 28 chr15 50993729 50994248 -50386273 + L1MA4A LINE L1 2510 3025 -3278 1448 193 39 35 chr15 50994248 50994559 -50385962 + AluJb SINE Alu 1 312 0 12300 194 34 28 chr15 50994559 50997811 -50382710 + L1MA4A LINE L1 3025 6303 0 203 189 0 0 chr15 50998167 50998204 -50382317 + MIR SINE MIR 118 154 -108 1831 236 10 2 chr15 50998219 50998669 -50381852 - MER89 LTR ERV1 -2 557 5 1529 179 90 75 chr15 50999039 50999504 -50381017 - MER41B LTR ERV1 -23 612 141 188 368 81 29 chr15 51000687 51000861 -50379660 + L2 LINE L2 2127 2309 -1005 247 329 33 46 chr15 51000945 51001097 -50379424 + L2 LINE L2 2699 2848 -466 586 283 21 27 chr15 51001230 51001417 -50379104 + MER5A DNA MER1_type 2 187 -2 400 200 70 0 chr15 51001419 51001519 -50379002 - MER103 DNA DNA -49 117 11 2136 136 0 0 chr15 51001677 51001979 -50378542 - AluSx SINE Alu -10 302 1 28 0 0 0 chr15 51003367 51003395 -50377126 + AT_rich Low_complexity Low_complexity 1 28 0 221 274 49 49 chr15 51004462 51004564 -50375957 + MIR SINE MIR 5 106 -156 186 103 0 0 chr15 51004582 51004611 -50375910 + (CA)n Simple_repeat Simple_repeat 1 29 0 530 261 0 45 chr15 51005708 51005842 -50374679 + MIR3 SINE MIR 76 203 -5 325 331 26 13 chr15 51007320 51007474 -50373047 + MER5A DNA MER1_type 7 162 -27 191 236 109 0 chr15 51007727 51007782 -50372739 + L2 LINE L2 3192 3252 -61 23 33 0 0 chr15 51007908 51007938 -50372583 + AT_rich Low_complexity Low_complexity 1 30 0 5282 255 84 38 chr15 51008049 51010936 -50369585 - L1ME1 LINE L1 -5 6161 3112 535 282 57 61 chr15 51011915 51012440 -50368081 - L1MC5 LINE L1 -67 7894 7372 256 306 116 0 chr15 51012470 51012617 -50367904 - L1MC4 LINE L1 -555 7487 7324 1071 45 0 0 chr15 51012710 51012843 -50367678 - L1PA5 LINE L1 -6 6148 6016 950 18 0 0 chr15 51012843 51012953 -50367568 + L1PA4 LINE L1 5771 5880 -275 361 250 6 81 chr15 51012948 51013108 -50367413 - L1MC5 LINE L1 -783 7178 7031 * 235 200 0 92 chr15 51013178 51013243 -50367278 - L2 LINE L2 -1 3312 3254 543 253 49 12 chr15 51014554 51014716 -50365805 - MIR SINE MIR -37 225 58 796 203 0 0 chr15 51015225 51015378 -50365143 + FRAM SINE Alu 13 165 -11 1634 140 40 20 chr15 51015393 51015693 -50364828 + AluJo SINE Alu 1 306 -6 624 264 47 59 chr15 51017032 51017286 -50363235 - MIR SINE MIR -10 252 2 718 233 79 82 chr15 51017945 51018348 -50362173 - MER39 LTR ERV1 0 707 306 377 300 9 0 chr15 51018374 51018484 -50362037 - MER34 LTR ERV1 -428 114 4 2488 65 3 0 chr15 51019873 51020182 -50360339 + AluY SINE Alu 1 310 -1 1902 158 3 0 chr15 51020692 51021002 -50359519 + AluY SINE Alu 1 311 0 314 280 24 24 chr15 51021589 51021714 -50358807 - L1MC5 LINE L1 -1897 5911 5787 323 217 221 60 chr15 51021851 51022068 -50358453 - L1MC5 LINE L1 -2301 5507 5256 5171 158 33 3 chr15 51022143 51023672 -50356849 - L1PA15 LINE L1 -2 6163 4608 2627 245 62 27 chr15 51023672 51024816 -50355705 - L1ME LINE L1 -584 5582 4392 1128 112 0 0 chr15 51024844 51024996 -50355525 + AluSg/x SINE Alu 149 300 -12 1472 148 89 43 chr15 51024997 51025322 -50355199 - THE1C LTR MaLR -35 340 1 1930 227 68 25 chr15 51025322 51026001 -50354520 - L1ME LINE L1 -1749 4397 3690 2082 121 10 7 chr15 51027137 51027434 -50353087 + AluSx SINE Alu 1 298 -14 450 325 128 68 chr15 51028447 51029030 -50351491 - L2 LINE L2 -4 3268 2658 289 333 44 49 chr15 51029462 51029645 -50350876 + L2 LINE L2 2296 2477 -837 * 453 343 166 24 chr15 51029629 51030008 -50350513 + L2 LINE L2 2881 3313 0 302 222 69 0 chr15 51030490 51030562 -50349959 + L2 LINE L2 3191 3267 -5 806 123 0 0 chr15 51030690 51030830 -50349691 - AluSc SINE Alu 0 304 165 263 235 0 0 chr15 51032917 51032968 -50347553 - MLT1F LTR MaLR 0 542 492 1192 281 37 3 chr15 51032996 51033345 -50347176 - MLT1F LTR MaLR -181 361 1 23 0 0 0 chr15 51033539 51033562 -50346959 + AT_rich Low_complexity Low_complexity 1 23 0 199 187 0 173 chr15 51033710 51033785 -50346736 - MER5A DNA MER1_type 0 189 128 559 247 209 0 chr15 51033808 51033966 -50346555 - MIR SINE MIR -16 246 56 806 218 41 6 chr15 51034232 51034402 -50346119 + MER5A DNA MER1_type 14 189 0 329 273 143 37 chr15 51034614 51034775 -50345746 - L2 LINE L2 -2 3311 3134 899 342 71 42 chr15 51034787 51035633 -50344888 + L2 LINE L2 2316 3193 -120 225 0 0 0 chr15 51035732 51035757 -50344764 + (CA)n Simple_repeat Simple_repeat 2 26 0 292 202 48 19 chr15 51035831 51035935 -50344586 + (TA)n Simple_repeat Simple_repeat 2 108 0 390 205 13 0 chr15 51035937 51036015 -50344506 + MER112 DNA MER1_type 180 258 -2 22 56 0 0 chr15 51036078 51036114 -50344407 + AT_rich Low_complexity Low_complexity 1 36 0 1078 195 72 81 chr15 51038522 51038967 -50341554 - MLT1D LTR MaLR -2 565 57 1236 297 63 41 chr15 51038968 51039459 -50341062 - MLT1E LTR MaLR -89 504 3 493 301 142 18 chr15 51039462 51039688 -50340833 + MIR SINE MIR 3 256 -6 2641 96 3 3 chr15 51039922 51040277 -50340244 + THE1A LTR MaLR 1 355 0 27 73 0 0 chr15 51040403 51040458 -50340063 + AT_rich Low_complexity Low_complexity 1 55 0 516 279 58 42 chr15 51040551 51040845 -50339676 - HAL1b LINE L1 -732 616 343 577 310 130 11 chr15 51040981 51041471 -50339050 + L2 LINE L2 2705 3272 0 407 219 76 0 chr15 51041864 51041969 -50338552 - L1MB7 LINE L1 -79 6105 5993 323 167 0 0 chr15 51041970 51042030 -50338491 + L1MB8 LINE L1 6107 6166 -12 206 256 156 0 chr15 51043310 51043400 -50337121 - MIR SINE MIR -75 187 84 676 221 58 5 chr15 51044582 51044806 -50335715 + L1MA4 LINE L1 6056 6300 0 374 284 138 0 chr15 51044881 51044997 -50335524 - L2 LINE L2 -3 3269 3138 223 371 62 0 chr15 51045085 51045182 -50335339 - L2 LINE L2 -190 3082 2980 17122 95 12 3 chr15 51045190 51048254 -50332267 + L1PA7 LINE L1 2801 5888 -266 10104 179 39 21 chr15 51048363 51049371 -50331150 + L1MA7 LINE L1 3103 4091 -2200 801 262 66 30 chr15 51049371 51049703 -50330818 - MER2 DNA MER2_type 0 344 1 10104 179 39 21 chr15 51049703 51051735 -50328786 + L1MA7 LINE L1 4091 6202 -89 362 244 22 22 chr15 51051939 51052029 -50328492 + L2 LINE L2 3168 3257 -56 359 289 22 30 chr15 51052026 51052161 -50328360 + MER5A DNA MER1_type 55 188 -1 * 3032 135 36 2 chr15 51052691 51053217 -50327304 - L1MA4 LINE L1 -11 6289 5746 305 287 134 42 chr15 51054855 51055071 -50325450 + L1MB4 LINE L1 5310 5545 -2263 754 297 20 8 chr15 51055125 51055374 -50325147 + L2 LINE L2 638 889 -2425 4708 113 24 82 chr15 51055391 51056264 -50324257 - LTR12 LTR ERV1 0 826 5 2364 193 38 34 chr15 51056280 51056891 -50323630 - pTR5 LTR ERV1 -1094 1344 732 1474 289 98 41 chr15 51056965 51057599 -50322922 + L2 LINE L2 1030 1699 -1615 1281 170 49 0 chr15 51057743 51057967 -50322554 - MER46A DNA MER2_type 0 236 2 33 0 0 0 chr15 51058039 51058072 -50322449 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr15 51058192 51058216 -50322305 + AT_rich Low_complexity Low_complexity 1 24 0 1264 152 0 0 chr15 51058290 51058488 -50322033 + L1PB1 LINE L1 1 198 -6665 * 13074 169 34 12 chr15 51058485 51062523 -50317998 + L1PB1 LINE L1 996 4945 -1922 405 0 0 0 chr15 51062523 51062568 -50317953 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 13074 169 34 12 chr15 51062568 51063920 -50316601 + L1PB1 LINE L1 4945 6266 -601 297 0 0 0 chr15 51063920 51063953 -50316568 + (TA)n Simple_repeat Simple_repeat 2 34 0 * 378 0 0 0 chr15 51063952 51063994 -50316527 + (GA)n Simple_repeat Simple_repeat 2 43 0 13074 169 34 12 chr15 51063953 51064321 -50316200 + L1PB1 LINE L1 6266 6850 -17 318 50 0 0 chr15 51064324 51064364 -50316157 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 1418 157 15 110 chr15 51064366 51064592 -50315929 + L1MB4 LINE L1 5811 5982 -198 2000 110 0 4 chr15 51064592 51064864 -50315657 - AluSq SINE Alu -42 271 1 1418 157 15 110 chr15 51064864 51065045 -50315476 + L1MB4 LINE L1 5982 6179 -1 1048 137 78 4 chr15 51065047 51065351 -50315170 + L1MB5 LINE L1 5812 6169 -2 385 321 41 7 chr15 51065429 51065700 -50314821 + L1ME LINE L1 5534 5813 -308 10332 216 54 39 chr15 51065703 51068220 -50312301 + L1M2 LINE L1 1 2556 -4293 41526 62 9 1 chr15 51068241 51074337 -50306184 + L1PA5 LINE L1 3 6147 -7 22 35 0 0 chr15 51074340 51074369 -50306152 + AT_rich Low_complexity Low_complexity 1 29 0 1577 196 9 11 chr15 51074369 51074792 -50305729 + L1M2 LINE L1 2587 3010 -3838 285 152 13 25 chr15 51074794 51074873 -50305648 + (TA)n Simple_repeat Simple_repeat 2 79 0 7264 210 52 8 chr15 51074873 51076637 -50303884 + L1M2 LINE L1 2960 4814 -2034 1780 124 106 4 chr15 51076637 51076912 -50303609 + AluSx SINE Alu 1 303 -9 7264 210 52 8 chr15 51076912 51077250 -50303271 + L1M2 LINE L1 4814 5136 -1712 6281 169 14 21 chr15 51077375 51079075 -50301446 + L1MA4A LINE L1 4277 5960 -343 1723 163 38 33 chr15 51079075 51079443 -50301078 - THE1C LTR MaLR -1 374 5 6281 169 14 21 chr15 51079443 51079781 -50300740 + L1MA4A LINE L1 5960 6299 -4 28 29 0 0 chr15 51079914 51079949 -50300572 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr15 51080466 51080487 -50300034 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr15 51082494 51082522 -50297999 + AT_rich Low_complexity Low_complexity 1 28 0 4339 72 0 5 chr15 51082581 51083152 -50297369 - L1PA8 LINE L1 0 6172 5605 2404 106 0 21 chr15 51083221 51083652 -50296869 - L1PA8 LINE L1 -543 5611 5194 516 273 0 0 chr15 51083780 51083919 -50296602 - L1M4c LINE L1 -4800 1584 1446 1705 130 17 23 chr15 51083939 51084238 -50296283 - L1PA16 LINE L1 -9 6157 5861 256 0 24 49 chr15 51084269 51084310 -50296211 + (TTTTA)n Simple_repeat Simple_repeat 4 43 0 2541 141 70 12 chr15 51084310 51084798 -50295723 - L1MA4 LINE L1 -14 6286 5771 292 179 104 28 chr15 51084802 51084815 -50295706 - L1MA4A LINE L1 0 6303 6291 3350 157 108 49 chr15 51084815 51085780 -50294741 - L1MA4A LINE L1 0 6163 5256 2000 188 72 7 chr15 51085780 51086185 -50294336 - MSTB1 LTR MaLR -1 431 1 3350 157 108 49 chr15 51086185 51086361 -50294160 - L1MA4A LINE L1 -907 5256 5092 387 0 0 0 chr15 51086361 51086404 -50294117 + (TTA)n Simple_repeat Simple_repeat 3 45 0 24409 30 1 0 chr15 51086404 51090113 -50290408 - L1PA3 LINE L1 -18 6137 2427 3350 157 108 49 chr15 51090113 51090203 -50290318 - L1MA4A LINE L1 -1070 5093 4828 7382 226 28 116 chr15 51090254 51093814 -50286707 - L1 LINE L1 -3595 3253 5 25 75 0 0 chr15 51094013 51094066 -50286455 + AT_rich Low_complexity Low_complexity 1 53 0 289 328 127 22 chr15 51094340 51094474 -50286047 + MER5A DNA MER1_type 1 148 -41 1296 149 0 1 chr15 51094567 51094835 -50285686 - AluSc SINE Alu 0 307 1 257 132 0 19 chr15 51095005 51095058 -50285463 + (CA)n Simple_repeat Simple_repeat 2 53 0 236 233 0 0 chr15 51096333 51096376 -50284145 + (TCCA)n Simple_repeat Simple_repeat 4 46 0 1081 271 57 62 chr15 51096518 51097208 -50283313 + L2 LINE L2 2549 3244 -69 1773 156 36 7 chr15 51097208 51097331 -50283190 + AluSx SINE Alu 1 119 -193 351 0 0 0 chr15 51097331 51097370 -50283151 + (CA)n Simple_repeat Simple_repeat 2 40 0 1773 156 36 7 chr15 51097370 51097547 -50282974 + AluSx SINE Alu 119 310 -2 1081 271 57 62 chr15 51097547 51097617 -50282904 + L2 LINE L2 3244 3313 0 2092 154 0 0 chr15 51098565 51098877 -50281644 + AluSx SINE Alu 1 312 0 198 191 0 0 chr15 51100559 51100601 -50279920 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 425 225 22 0 chr15 51100716 51100805 -50279716 - MLT1J1 LTR MaLR -355 91 1 200 385 0 24 chr15 51102154 51102237 -50278284 + L2 LINE L2 3191 3271 -1 1205 253 68 18 chr15 51102306 51102748 -50277773 - Zaphod DNA AcHobo 0 4031 3568 2761 238 63 86 chr15 51102755 51102801 -50277720 - Zaphod DNA AcHobo -2889 1142 1096 2209 53 42 7 chr15 51102801 51103085 -50277436 + AluY SINE Alu 1 294 -17 2761 238 63 86 chr15 51103085 51104207 -50276314 - Zaphod DNA AcHobo -2935 1096 1 221 146 21 0 chr15 51104443 51104491 -50276030 + CT-rich Low_complexity Low_complexity 3 51 0 404 206 0 28 chr15 51105219 51105326 -50275195 + L1PA11 LINE L1 6069 6172 -2 22 0 0 0 chr15 51105657 51105679 -50274842 + AT_rich Low_complexity Low_complexity 1 22 0 238 285 97 59 chr15 51106329 51106515 -50274006 - L2 LINE L2 -18 3295 3103 29 47 0 0 chr15 51106723 51106766 -50273755 + AT_rich Low_complexity Low_complexity 1 43 0 1491 149 42 7 chr15 51106999 51107288 -50273233 + L1MA8 LINE L1 5987 6285 -6 4075 71 3 39 chr15 51107465 51108058 -50272463 + L1PB1 LINE L1 5580 6151 0 316 325 19 122 chr15 51108323 51108594 -50271927 + L1MEc LINE L1 167 409 -5987 395 239 15 54 chr15 51108749 51108879 -50271642 - L1ME3A LINE L1 -146 6024 5900 648 248 61 14 chr15 51109329 51109624 -50270897 + L1MEc LINE L1 2768 3076 -3139 644 271 122 5 chr15 51109659 51110036 -50270485 + L1M4 LINE L1 4305 4725 -1421 2493 148 34 2 chr15 51110089 51110500 -50270021 - MSTA LTR MaLR -4 424 1 374 294 37 25 chr15 51110507 51110670 -50269851 + L1M4 LINE L1 4791 4955 -1191 22 0 0 0 chr15 51111427 51111449 -50269072 + AT_rich Low_complexity Low_complexity 1 22 0 205 316 175 70 chr15 51113218 51113389 -50267132 - L2 LINE L2 -5 3267 3079 207 154 19 19 chr15 51114421 51114473 -50266048 + A-rich Low_complexity Low_complexity 3 54 0 1583 100 26 13 chr15 51114506 51114736 -50265785 - AluSg/x SINE Alu -5 305 73 239 346 0 0 chr15 51115271 51115352 -50265169 - L2 LINE L2 -12 3260 3180 311 267 144 14 chr15 51115399 51115545 -50264976 - MIR SINE MIR 0 262 98 776 241 21 16 chr15 51116419 51116606 -50263915 - MER5A DNA MER1_type -1 188 1 351 39 39 0 chr15 51116819 51116870 -50263651 - AluY SINE Alu 0 300 248 22 0 0 0 chr15 51119841 51119863 -50260658 + AT_rich Low_complexity Low_complexity 1 22 0 2181 109 3 3 chr15 51119994 51120297 -50260224 + AluSq SINE Alu 1 303 -10 24 0 0 0 chr15 51120413 51120437 -50260084 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr15 51120483 51120517 -50260004 + AT_rich Low_complexity Low_complexity 1 34 0 257 291 223 10 chr15 51121505 51121608 -50258913 + MER5B DNA MER1_type 2 126 -52 21 36 0 0 chr15 51122393 51122421 -50258100 + AT_rich Low_complexity Low_complexity 1 28 0 286 283 0 11 chr15 51124857 51124949 -50255572 + T-rich Low_complexity Low_complexity 2 92 0 209 329 12 24 chr15 51126195 51126280 -50254241 + MER5A DNA MER1_type 105 188 -1 883 244 0 21 chr15 51127380 51127573 -50252948 - MER5A DNA MER1_type 0 189 1 2047 134 13 3 chr15 51127598 51127897 -50252624 + AluSx SINE Alu 1 302 -10 413 318 30 30 chr15 51128743 51128875 -50251646 - L2 LINE L2 -4 3268 3137 211 344 0 32 chr15 51130167 51130260 -50250261 + MIR3 SINE MIR 113 202 -6 590 351 123 20 chr15 51131120 51131769 -50248752 - L2 LINE L2 -555 2759 2044 2163 87 0 24 chr15 51133273 51133598 -50246923 + AluSx SINE Alu 1 318 0 180 111 0 0 chr15 51136497 51136524 -50243997 + (A)n Simple_repeat Simple_repeat 1 27 0 2344 67 13 41 chr15 51137534 51137849 -50242672 + AluY SINE Alu 1 306 -5 24 0 0 0 chr15 51138914 51138938 -50241583 + AT_rich Low_complexity Low_complexity 1 24 0 216 255 0 0 chr15 51139595 51139646 -50240875 + T-rich Low_complexity Low_complexity 1 51 0 448 250 46 9 chr15 51140569 51140677 -50239844 + L2 LINE L2 3202 3313 0 956 155 13 80 chr15 51141232 51141471 -50239050 - L1MA9 LINE L1 -7 6305 6083 1210 271 259 31 chr15 51141473 51142420 -50238101 - L2 LINE L2 -16 3297 2075 678 209 44 11 chr15 51142420 51142602 -50237919 - MER53 DNA DNA 0 189 2 1210 271 259 31 chr15 51142602 51142723 -50237798 - L2 LINE L2 -1238 2075 1983 1772 168 8 37 chr15 51142734 51143109 -50237412 - L1MB8 LINE L1 0 6178 5815 1550 98 4 8 chr15 51143109 51143335 -50237186 - L1PA13 LINE L1 -1 6162 5930 2522 87 3 0 chr15 51143335 51143681 -50236840 + L1PA13 LINE L1 5565 5911 -257 353 330 43 0 chr15 51144611 51144726 -50235795 - L2 LINE L2 -9 3304 3185 220 372 0 13 chr15 51144828 51144906 -50235615 - MER5B DNA MER1_type -68 110 34 3196 208 23 33 chr15 51145152 51145886 -50234635 + L1PA7 LINE L1 1268 1994 -4793 2486 244 92 4 chr15 51145887 51146622 -50233899 + L1PA7 LINE L1 2531 3330 -3467 9249 200 2 19 chr15 51146768 51149593 -50230928 + L1PA7 LINE L1 3988 6801 -4 23 0 0 0 chr15 51149811 51149834 -50230687 + AT_rich Low_complexity Low_complexity 1 23 0 1948 40 0 4 chr15 51151325 51151553 -50228968 - AluY SINE Alu 0 311 85 480 239 43 8 chr15 51151930 51152047 -50228474 - L2 LINE L2 0 3313 3193 414 335 31 11 chr15 51153328 51153519 -50227002 + MIR SINE MIR 7 201 -61 211 288 27 14 chr15 51154030 51154103 -50226418 + MIR SINE MIR 57 130 -78 549 329 77 52 chr15 51154116 51154620 -50225901 - MLT1K LTR MaLR -2 586 70 24 0 0 0 chr15 51155068 51155092 -50225429 + AT_rich Low_complexity Low_complexity 1 24 0 307 172 61 10 chr15 51155340 51155439 -50225082 + (TATAA)n Simple_repeat Simple_repeat 1 104 0 302 199 29 6 chr15 51155445 51155616 -50224905 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 395 152 29 47 chr15 51155798 51156244 -50224277 + (TTATA)n Simple_repeat Simple_repeat 1 437 0 22 0 0 0 chr15 51156270 51156292 -50224229 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr15 51156629 51156662 -50223859 + AT_rich Low_complexity Low_complexity 1 33 0 482 414 18 6 chr15 51157090 51157259 -50223262 + MER91A DNA MER1_type 5 175 -21 354 308 50 0 chr15 51157329 51157449 -50223072 + L2 LINE L2 3181 3306 -7 24 53 0 0 chr15 51157664 51157702 -50222819 + AT_rich Low_complexity Low_complexity 1 38 0 306 53 386 0 chr15 51158569 51158626 -50221895 - MADE1 DNA Mariner -1 79 1 23 68 0 0 chr15 51159561 51159605 -50220916 + AT_rich Low_complexity Low_complexity 1 44 0 3306 31 0 0 chr15 51160800 51161190 -50219331 + L1PA3 LINE L1 5766 6155 0 284 331 23 30 chr15 51161192 51161325 -50219196 - MIR SINE MIR -112 150 19 297 283 116 36 chr15 51163710 51163848 -50216673 + MIR SINE MIR 114 262 0 1310 340 90 28 chr15 51165342 51166244 -50214277 - L3 LINE CR1 -3 1574 617 314 311 0 17 chr15 51167615 51167734 -50212787 + MER103 DNA DNA 2 118 -48 429 349 119 11 chr15 51168017 51168278 -50212243 + L2 LINE L2 3023 3311 -2 747 255 119 20 chr15 51168427 51168780 -50211741 - LTR37A LTR ERV1 0 426 39 219 146 0 0 chr15 51168855 51168896 -50211625 + (TCC)n Simple_repeat Simple_repeat 2 42 0 29 0 0 0 chr15 51171087 51171116 -50209405 + AT_rich Low_complexity Low_complexity 1 29 0 1769 159 75 0 chr15 51172209 51172529 -50207992 + MER2 DNA MER2_type 1 344 0 228 232 18 0 chr15 51172529 51172585 -50207936 + (TG)n Simple_repeat Simple_repeat 2 58 0 289 318 9 0 chr15 51173738 51173845 -50206676 - ERVL LTR ERVL -384 5380 5273 2600 113 3 0 chr15 51174106 51174469 -50206052 - THE1B LTR MaLR 0 364 1 876 257 49 93 chr15 51174647 51175079 -50205442 + LTR16C LTR ERVL 72 484 -7 1250 116 21 0 chr15 51176256 51176445 -50204076 - L1MA1 LINE L1 -41 6261 6069 327 338 0 0 chr15 51177069 51177149 -50203372 + MIR3 SINE MIR 114 193 -15 2077 120 10 10 chr15 51177568 51177869 -50202652 - AluSx SINE Alu -11 301 1 205 319 0 22 chr15 51178024 51178115 -50202406 + T-rich Low_complexity Low_complexity 2 90 0 232 227 0 0 chr15 51178689 51178733 -50201788 - L2 LINE L2 -3 3269 3226 987 208 19 19 chr15 51178799 51179015 -50201506 + MER20 DNA MER1_type 3 218 -1 1795 110 0 0 chr15 51180172 51180432 -50200089 - AluSx SINE Alu 0 307 48 21 0 0 0 chr15 51180704 51180725 -50199796 + AT_rich Low_complexity Low_complexity 1 21 0 296 358 73 30 chr15 51181904 51182069 -50198452 + L2 LINE L2 3101 3272 0 180 242 0 0 chr15 51182498 51182531 -50197990 - L2 LINE L2 -26 3246 3214 883 126 0 101 chr15 51183857 51184016 -50196505 + AluSq/x SINE Alu 7 149 -164 291 337 77 12 chr15 51184122 51184291 -50196230 - L2 LINE L2 -642 2672 2493 34 0 0 0 chr15 51184454 51184488 -50196033 + AT_rich Low_complexity Low_complexity 1 34 0 2203 105 3 7 chr15 51184621 51184926 -50195595 + AluY SINE Alu 1 304 -7 555 279 109 6 chr15 51185655 51185838 -50194683 + MIR SINE MIR 61 262 0 215 300 0 17 chr15 51186083 51186143 -50194378 - MIR SINE MIR -3 259 201 205 254 0 111 chr15 51186089 51186152 -50194369 - L2 LINE L2 -14 3258 3203 * 202 195 24 0 chr15 51186450 51186491 -50194030 + MER5A DNA MER1_type 6 47 -142 1704 197 22 25 chr15 51186491 51186857 -50193664 - MLT1A2 LTR MaLR -9 365 1 516 244 102 0 chr15 51186859 51186986 -50193535 + MER5A DNA MER1_type 49 188 -1 280 196 0 33 chr15 51187168 51187260 -50193261 + GA-rich Low_complexity Low_complexity 1 89 0 216 277 175 42 chr15 51187434 51187600 -50192921 - L2 LINE L2 -896 2418 2231 821 199 18 12 chr15 51188110 51188276 -50192245 - MER5A DNA MER1_type -22 167 1 2475 173 118 2 chr15 51188787 51189364 -50191157 - MER73 LTR ERVL 0 644 1 292 309 124 21 chr15 51189868 51190037 -50190484 - MIR SINE MIR -41 221 38 2401 161 24 0 chr15 51190268 51190684 -50189837 + MSTB LTR MaLR 1 426 0 3340 172 39 0 chr15 51190754 51191364 -50189157 - MER67C LTR ERV1 0 710 77 1264 236 38 54 chr15 51191397 51191792 -50188729 - MLT1B LTR MaLR -2 591 1 802 262 37 0 chr15 51193456 51193643 -50186878 + MIR SINE MIR 53 246 -16 13861 186 30 14 chr15 51193648 51194434 -50186087 - L1PB1 LINE L1 0 6867 6096 2460 94 0 0 chr15 51194434 51194742 -50185779 - AluSg SINE Alu -2 308 1 13861 186 30 14 chr15 51194742 51195673 -50184848 - L1PB1 LINE L1 -771 6096 5182 189 0 0 0 chr15 51195673 51195694 -50184827 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 13861 186 30 14 chr15 51195694 51199416 -50181105 - L1PB1 LINE L1 -1685 5182 1332 2147 179 102 9 chr15 51199440 51199892 -50180629 - L1PB1 LINE L1 -5707 1156 663 536 254 74 33 chr15 51199906 51199944 -50180577 - L1PB1 LINE L1 -6593 270 235 4735 45 21 0 chr15 51199944 51200519 -50180002 - LTR14C LTR ERVK 0 587 1 536 254 74 33 chr15 51200519 51200724 -50179797 - L1PB1 LINE L1 -6628 235 17 2056 187 65 5 chr15 51201739 51202140 -50178381 + MSTB LTR MaLR 2 426 0 260 175 0 0 chr15 51202165 51202205 -50178316 - MER1B DNA MER1_type -1 332 293 1477 142 9 0 chr15 51202227 51202438 -50178083 - MER1B DNA MER1_type -84 213 1 360 281 105 97 chr15 51203057 51203250 -50177271 + L3 LINE CR1 1341 1538 -39 1976 117 28 7 chr15 51203250 51203540 -50176981 - AluSx SINE Alu -16 296 1 360 281 105 97 chr15 51203540 51203574 -50176947 + L3 LINE CR1 1538 1570 -7 295 176 0 44 chr15 51204310 51204378 -50176143 - MIR SINE MIR -98 164 100 208 320 90 30 chr15 51204820 51205020 -50175501 - L3b LINE CR1 -153 1430 1219 195 352 39 8 chr15 51205507 51205635 -50174886 - L2 LINE L2 -309 2963 2832 318 325 57 41 chr15 51205909 51206032 -50174489 - L2 LINE L2 0 3313 3189 1430 118 50 5 chr15 51206032 51206252 -50174269 + MER30 DNA MER1_type 1 230 0 286 249 160 28 chr15 51208009 51208222 -50172299 - L1MC5 LINE L1 -435 7526 7286 1803 138 21 7 chr15 51208826 51209115 -50171406 + AluSx SINE Alu 1 293 -19 297 143 0 4 chr15 51210139 51210208 -50170313 + L1PA10 LINE L1 6093 6160 -8 404 310 41 29 chr15 51210725 51210896 -50169625 - MER5B DNA MER1_type -2 176 4 398 324 146 0 chr15 51211856 51212041 -50168480 - MIR SINE MIR -48 214 3 184 392 54 0 chr15 51212070 51212144 -50168377 - L2 LINE L2 -44 3228 3151 26 64 0 0 chr15 51212315 51212362 -50168159 + AT_rich Low_complexity Low_complexity 1 47 0 1994 126 133 16 chr15 51212798 51213180 -50167341 - MSTA LTR MaLR -1 427 1 344 283 152 22 chr15 51213496 51213680 -50166841 - MIR SINE MIR -6 256 49 2609 108 11 0 chr15 51214972 51215343 -50165178 - THE1C LTR MaLR 0 375 1 1655 128 4 4 chr15 51215491 51215734 -50164787 - AluSx SINE Alu -21 291 49 837 233 107 5 chr15 51215845 51216060 -50164461 - MIR SINE MIR 0 262 26 24 0 0 0 chr15 51216993 51217017 -50163504 + AT_rich Low_complexity Low_complexity 1 24 0 310 284 79 24 chr15 51218620 51218747 -50161774 + L1ME3A LINE L1 5751 5884 -286 412 238 238 18 chr15 51219055 51219223 -50161298 - L2 LINE L2 -8 3305 3101 1266 111 21 0 chr15 51220363 51220552 -50159969 - L1MA1 LINE L1 -41 6261 6069 327 338 0 0 chr15 51221176 51221256 -50159265 + MIR3 SINE MIR 114 193 -15 325 257 14 0 chr15 51221559 51221633 -50158888 + MER7A DNA MER2_type 7 79 -267 * 511 167 62 0 chr15 51221625 51221721 -50158800 + Tigger3(Golem) DNA MER2_type 126 227 -2802 3191 150 135 9 chr15 51221751 51222419 -50158102 + Tigger3(Golem) DNA MER2_type 2278 3029 0 229 209 47 23 chr15 51222611 51222697 -50157824 + L1MB1 LINE L1 5981 6068 -100 257 301 282 0 chr15 51222700 51222863 -50157658 + MIR SINE MIR 54 262 0 2990 212 138 18 chr15 51224053 51224965 -50155556 - Tigger6a DNA MER2_type -13 1070 49 954 197 0 4 chr15 51225850 51226058 -50154463 + AluJb SINE Alu 1 298 -14 231 277 0 0 chr15 51226747 51226812 -50153709 + L1MC/D LINE L1 5824 5888 -1920 206 307 173 5 chr15 51226906 51227025 -50153496 - MIR SINE MIR -62 146 20 180 384 101 0 chr15 51227121 51227220 -50153301 + L2 LINE L2 3127 3235 -37 433 289 98 38 chr15 51228413 51228679 -50151842 + L1ME4a LINE L1 5672 5953 -168 679 305 174 28 chr15 51229333 51230047 -50150474 - L2 LINE L2 -1 3312 2478 408 326 44 37 chr15 51230368 51230641 -50149880 - LTR33 LTR ERVL -245 276 2 279 271 271 0 chr15 51230648 51230781 -50149740 - L2 LINE L2 -845 2469 2301 181 228 105 0 chr15 51231979 51232036 -50148485 + L3 LINE CR1 419 481 -1096 4025 135 14 25 chr15 51233994 51234705 -50145816 + L1PA15 LINE L1 5458 6160 -5 21 0 0 0 chr15 51236076 51236097 -50144424 + AT_rich Low_complexity Low_complexity 1 21 0 373 244 79 8 chr15 51236102 51236229 -50144292 + MER104 DNA Tc2 25 160 -20 1701 176 3 7 chr15 51236317 51236606 -50143915 + AluJb SINE Alu 1 288 -24 4016 250 63 48 chr15 51236619 51238138 -50142383 - L1ME1 LINE L1 -17 6149 4579 2268 96 3 0 chr15 51238138 51238431 -50142090 + AluSp SINE Alu 1 294 -19 4016 250 63 48 chr15 51238431 51239562 -50140959 - L1ME1 LINE L1 -1587 4579 3466 768 225 11 47 chr15 51239675 51239866 -50140655 - MER20 DNA MER1_type -34 185 2 511 326 96 9 chr15 51239869 51240087 -50140434 + MIR SINE MIR 24 260 -2 928 342 54 32 chr15 51241800 51242452 -50138069 + L1M2a LINE L1 1548 2213 -4955 613 254 0 0 chr15 51242454 51242576 -50137945 - FLAM_A SINE Alu -19 123 2 2890 262 63 22 chr15 51242598 51244001 -50136520 + L1MA8 LINE L1 2314 3780 -3785 1164 103 0 7 chr15 51244001 51244271 -50136250 + THE1B LTR MaLR 1 364 0 1183 240 10 6 chr15 51244273 51244586 -50135935 + L1MA8 LINE L1 3776 4089 -3476 4553 192 36 21 chr15 51244593 51245994 -50134527 + L1MA8 LINE L1 6225 7655 -55 3036 170 21 40 chr15 51245994 51246618 -50133903 + LTR9 LTR ERV1 1 612 0 4553 192 36 21 chr15 51246618 51246675 -50133846 + L1MA8 LINE L1 7655 7710 0 3470 253 62 68 chr15 51246950 51247265 -50133256 + L1PA12 LINE L1 42 357 -7224 2349 88 3 0 chr15 51247265 51247570 -50132951 - AluSp SINE Alu -7 306 1 3470 253 62 68 chr15 51247570 51248422 -50132099 + L1PA12 LINE L1 357 1202 -6379 22 0 0 0 chr15 51248643 51248665 -50131856 + AT_rich Low_complexity Low_complexity 1 22 0 19037 180 32 22 chr15 51248714 51249013 -50131508 + L1M1 LINE L1 15 309 -7412 1714 163 7 27 chr15 51249013 51249307 -50131214 + AluJb SINE Alu 1 288 -24 19037 180 32 22 chr15 51249307 51253817 -50126704 + L1M1 LINE L1 309 4771 -2950 2104 151 122 8 chr15 51253817 51254201 -50126320 - MSTA LTR MaLR 0 428 1 8607 178 29 10 chr15 51254201 51255821 -50124700 - MSTA-int LTR MaLR 0 1651 1 1944 144 163 5 chr15 51255821 51256189 -50124332 - MSTA LTR MaLR 0 428 3 19037 180 32 22 chr15 51256189 51256515 -50124006 + L1M1 LINE L1 4771 5092 -2629 1718 185 0 17 chr15 51256515 51256817 -50123704 + AluJb SINE Alu 1 297 -15 19037 180 32 22 chr15 51256817 51258791 -50121730 + L1M1 LINE L1 5092 7195 -526 198 0 0 0 chr15 51258988 51259010 -50121511 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 239 289 134 43 chr15 51259271 51259458 -50121063 + MLT1J LTR MaLR 261 464 -47 1452 180 30 23 chr15 51259743 51260285 -50120236 + L1PB4 LINE L1 4983 5535 -743 2111 177 3 5 chr15 51260285 51260656 -50119865 + L1PB4 LINE L1 5769 6156 0 241 217 24 12 chr15 51260658 51260741 -50119780 + GA-rich Low_complexity Low_complexity 2 85 0 906 341 64 40 chr15 51260760 51261600 -50118921 + L2 LINE L2 2186 3047 -225 1919 128 30 17 chr15 51261670 51261966 -50118555 - AluSx SINE Alu -12 300 1 232 216 27 0 chr15 51262146 51262220 -50118301 + (TA)n Simple_repeat Simple_repeat 2 77 0 357 225 0 0 chr15 51262631 51262720 -50117801 + A-rich Low_complexity Low_complexity 1 89 0 384 312 70 25 chr15 51263578 51263777 -50116744 + MIR SINE MIR 1 208 -54 234 212 15 45 chr15 51266622 51266688 -50113833 + MIR SINE MIR 79 142 -120 357 24 0 0 chr15 51267603 51267645 -50112876 + (CA)n Simple_repeat Simple_repeat 2 43 0 456 258 8 31 chr15 51268060 51268188 -50112333 - L2 LINE L2 0 3313 3189 185 339 157 16 chr15 51268252 51268373 -50112148 + MER5A DNA MER1_type 2 139 -50 346 309 69 63 chr15 51268480 51268797 -50111724 + L1ME4a LINE L1 5645 5963 -158 30 59 0 0 chr15 51268869 51268920 -50111601 + AT_rich Low_complexity Low_complexity 1 51 0 849 307 110 7 chr15 51269465 51269774 -50110747 - LTR33 LTR ERVL -178 343 3 1808 137 4 36 chr15 51270695 51271080 -50109441 - MER1B DNA MER1_type 0 333 1 491 347 57 20 chr15 51271113 51271361 -50109160 - MIR SINE MIR 0 262 6 259 307 0 13 chr15 51272837 51272912 -50107609 - MIR SINE MIR -181 81 8 26 30 0 0 chr15 51272929 51272962 -50107559 + AT_rich Low_complexity Low_complexity 1 33 0 975 197 5 0 chr15 51273696 51273889 -50106632 + L1PB1 LINE L1 1 194 -6669 14054 190 29 18 chr15 51273889 51274798 -50105723 + L1PB1 LINE L1 995 1892 -4975 1798 133 4 0 chr15 51274798 51275054 -50105467 + AluSc SINE Alu 39 295 -14 14054 190 29 18 chr15 51275054 51279750 -50100771 + L1PB1 LINE L1 1892 6866 -1 645 108 18 9 chr15 51279766 51279877 -50100644 + L1MB3 LINE L1 6065 6176 -7 195 299 30 15 chr15 51280022 51280089 -50100432 - L2 LINE L2 -6 3307 3240 465 328 70 84 chr15 51280903 51281448 -50099073 - L2 LINE L2 -489 2825 2289 1167 237 40 18 chr15 51281845 51282174 -50098347 - L1MA9 LINE L1 -38 6274 5939 298 314 78 6 chr15 51282324 51282681 -50097840 + L1M4 LINE L1 2239 2621 -3525 * 783 128 0 70 chr15 51282679 51282706 -50097815 + L1 LINE L1 4895 4922 -1224 2392 55 3 3 chr15 51282706 51282997 -50097524 + AluY SINE Alu 1 291 -20 783 128 0 70 chr15 51282997 51283125 -50097396 + L1 LINE L1 4922 5039 -1107 254 344 16 0 chr15 51283184 51283309 -50097212 + L1M4 LINE L1 2676 2802 -3344 607 320 21 51 chr15 51283313 51283644 -50096877 - MLT1I LTR MaLR -19 390 70 526 289 66 44 chr15 51283935 51284664 -50095857 + L1M4 LINE L1 4617 5361 -785 2608 255 14 49 chr15 51284680 51285666 -50094855 + L1MC4a LINE L1 6853 7804 -4 656 209 23 91 chr15 51285652 51285915 -50094606 + L1MEc LINE L1 1832 2076 -4320 * 1452 210 3 0 chr15 51286432 51286723 -50093798 - L1MA9 LINE L1 -403 5888 5597 901 207 23 5 chr15 51286728 51286945 -50093576 - L1MA9 LINE L1 -826 5320 5100 1460 180 77 25 chr15 51286947 51287254 -50093267 + L1MA7 LINE L1 5905 6235 -56 315 0 0 0 chr15 51287254 51287289 -50093232 + (TG)n Simple_repeat Simple_repeat 2 36 0 1460 180 77 25 chr15 51287289 51287343 -50093178 + L1MA7 LINE L1 6235 6285 -6 72 32 0 0 chr15 51287779 51287872 -50092649 + AT_rich Low_complexity Low_complexity 1 93 0 1769 149 152 11 chr15 51288006 51288381 -50092140 - MSTA LTR MaLR 0 428 1 543 274 66 47 chr15 51288433 51288860 -50091661 + L1MEc LINE L1 1262 1696 -4700 2187 113 0 31 chr15 51289221 51289540 -50090981 + AluSg SINE Alu 1 309 -1 261 243 117 18 chr15 51289738 51289849 -50090672 + L1ME1 LINE L1 5980 6101 -65 1980 255 114 13 chr15 51289913 51290696 -50089825 + L1MC4 LINE L1 6935 7796 -246 304 220 33 22 chr15 51290917 51291008 -50089513 + L1MC4a LINE L1 5812 5903 -1905 638 254 48 59 chr15 51291152 51291424 -50089097 + L1MC4a LINE L1 6591 6859 -949 231 36 0 0 chr15 51291425 51291453 -50089068 + (A)n Simple_repeat Simple_repeat 1 28 0 371 319 38 13 chr15 51291736 51291893 -50088628 + MIR SINE MIR 64 224 -38 214 255 88 69 chr15 51291978 51292080 -50088441 - L2 LINE L2 -1 3271 3168 2390 90 3 0 chr15 51292087 51292397 -50088124 - AluY SINE Alu 0 311 1 324 0 0 0 chr15 51292523 51292559 -50087962 + (A)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr15 51293745 51293767 -50086754 + AT_rich Low_complexity Low_complexity 1 22 0 630 243 40 17 chr15 51293797 51293970 -50086551 - MER5B DNA MER1_type 0 178 2 1830 135 71 0 chr15 51295650 51295931 -50084590 + AluSx SINE Alu 1 301 -11 428 269 47 40 chr15 51295989 51296138 -50084383 + L1ME1 LINE L1 6012 6161 -5 1748 140 11 0 chr15 51297800 51298064 -50082457 + AluSx SINE Alu 14 280 -32 227 319 28 0 chr15 51298071 51298143 -50082378 + GA-rich Low_complexity Low_complexity 3 76 0 415 143 0 0 chr15 51298353 51298423 -50082098 + L1MA2 LINE L1 6235 6304 0 2033 124 7 0 chr15 51299000 51299282 -50081239 + AluSg SINE Alu 1 284 -26 205 300 0 0 chr15 51299476 51299526 -50080995 + L2 LINE L2 3221 3270 -43 26 50 0 0 chr15 51299607 51299647 -50080874 + AT_rich Low_complexity Low_complexity 1 40 0 2271 145 56 0 chr15 51300385 51300758 -50079763 + MER61B LTR ERV1 1 394 -31 574 320 99 56 chr15 51301356 51301840 -50078681 + L2 LINE L2 2804 3308 -5 203 229 161 25 chr15 51301843 51301961 -50078560 - MIR SINE MIR -63 199 66 1396 235 66 41 chr15 51302203 51302645 -50077876 + L1MCc LINE L1 18 470 -5953 1741 253 92 5 chr15 51302755 51303312 -50077209 + L1MCc LINE L1 963 1566 -4856 215 329 14 14 chr15 51303631 51303704 -50076817 + MIR SINE MIR 67 139 -69 287 333 52 0 chr15 51303970 51304066 -50076455 + MIR3 SINE MIR 92 192 -16 43748 41 3 3 chr15 51304070 51310224 -50070297 + L1PA4 LINE L1 2 6152 -3 2951 184 45 5 chr15 51311011 51311367 -50069154 - MER6A DNA MER2_type -260 605 216 315 0 0 0 chr15 51311367 51311402 -50069119 + (CA)n Simple_repeat Simple_repeat 1 35 0 2951 184 45 5 chr15 51311402 51311627 -50068894 - MER6A DNA MER2_type -649 216 1 190 154 0 39 chr15 51312743 51312795 -50067726 + CT-rich Low_complexity Low_complexity 1 50 0 6132 136 46 18 chr15 51312880 51313971 -50066550 - MER52C LTR ERV1 0 1278 158 837 183 0 17 chr15 51315755 51315930 -50064591 - L1MA3 LINE L1 0 6305 6134 496 316 96 0 chr15 51316161 51316338 -50064183 - LTR16B LTR ERVL -270 194 1 233 314 143 19 chr15 51317341 51317551 -50062970 + Charlie7 DNA MER1_type 138 373 -2239 1849 227 62 72 chr15 51317564 51318211 -50062310 + Charlie7 DNA MER1_type 499 1138 -1474 1995 101 3 65 chr15 51318211 51318518 -50062003 - AluSp SINE Alu -25 288 1 1849 227 62 72 chr15 51318518 51318691 -50061830 + Charlie7 DNA MER1_type 1138 1311 -1301 228 200 0 0 chr15 51319416 51319461 -50061060 - L2 LINE L2 -1 3312 3268 256 277 32 11 chr15 51319508 51319602 -50060919 + L1MC/D LINE L1 5665 5760 -2048 25 0 0 0 chr15 51319707 51319732 -50060789 + AT_rich Low_complexity Low_complexity 1 25 0 1597 254 91 26 chr15 51319732 51320421 -50060100 + Charlie7 DNA MER1_type 1399 2132 -480 471 284 44 16 chr15 51323033 51323216 -50057305 - LTR33 LTR ERVL -8 513 326 281 341 8 8 chr15 51323338 51323461 -50057060 - LTR33 LTR ERVL -373 148 26 26 0 0 0 chr15 51323539 51323565 -50056956 + AT_rich Low_complexity Low_complexity 1 26 0 726 321 54 50 chr15 51323757 51324261 -50056260 - HAL1b LINE L1 -839 509 4 23 33 0 0 chr15 51325561 51325591 -50054930 + AT_rich Low_complexity Low_complexity 1 30 0 580 317 227 26 chr15 51325591 51326326 -50054195 - L1MEc LINE L1 -4128 2268 1386 240 303 22 0 chr15 51326523 51326612 -50053909 - L1MEc LINE L1 -5091 1114 1024 5695 123 21 4 chr15 51326970 51327879 -50052642 - L1MA2 LINE L1 0 7723 6800 2683 101 14 17 chr15 51327879 51328297 -50052224 + MER11A LTR ERVK 850 1266 0 6912 175 22 5 chr15 51328328 51329692 -50050829 - L1MA2 LINE L1 -862 6703 5317 * 12220 159 32 7 chr15 51329684 51332524 -50047997 - L1MA2 LINE L1 -3116 4449 1540 1351 185 21 4 chr15 51332526 51332841 -50047680 + MER52A LTR ERV1 1391 1755 0 769 217 13 7 chr15 51332842 51332994 -50047527 - L1MA2 LINE L1 -7229 336 184 372 80 0 0 chr15 51332996 51333082 -50047439 + L1PA8 LINE L1 6110 6195 0 3095 305 237 27 chr15 51333162 51334258 -50046263 - L2 LINE L2 -6 3307 2442 1762 199 17 6 chr15 51334258 51334619 -50045902 + MLT1A1 LTR MaLR 1 365 0 3095 305 237 27 chr15 51334619 51336174 -50044347 - L2 LINE L2 -871 2442 80 2215 102 0 10 chr15 51336597 51336902 -50043619 - AluSg1 SINE Alu -7 302 1 296 230 54 0 chr15 51337084 51337158 -50043363 - MIR SINE MIR -113 149 72 721 221 123 6 chr15 51337231 51337394 -50043127 + MER5A DNA MER1_type 2 183 -6 238 308 51 51 chr15 51338437 51338554 -50041967 - MIR3 SINE MIR -53 155 39 923 192 206 9 chr15 51338688 51339082 -50041439 + Charlie1b DNA MER1_type 44 523 0 342 340 156 35 chr15 51339145 51339680 -50040841 - L2 LINE L2 -1 3312 2716 842 310 65 49 chr15 51340301 51340827 -50039694 - L2 LINE L2 -587 2727 2194 1231 220 50 73 chr15 51340831 51341313 -50039208 + LTR53 LTR ERVL 37 507 -12 649 323 201 29 chr15 51341409 51341839 -50038682 - L2 LINE L2 -1219 2095 1740 1950 150 29 47 chr15 51341839 51342219 -50038302 - THE1C LTR MaLR -2 373 1 649 323 201 29 chr15 51342219 51342473 -50038048 - L2 LINE L2 -1574 1740 1293 211 342 38 0 chr15 51342662 51342741 -50037780 - MIR SINE MIR -63 145 64 1394 300 89 32 chr15 51343278 51343325 -50037196 + L1M2c LINE L1 785 828 -6738 261 0 0 0 chr15 51343325 51343354 -50037167 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1394 300 89 32 chr15 51343354 51343903 -50036618 + L1M2c LINE L1 828 1415 -6151 4248 229 65 49 chr15 51343999 51344893 -50035628 + L1M2c LINE L1 2097 2975 -4590 2001 189 65 5 chr15 51344893 51345295 -50035226 - MSTB LTR MaLR 0 426 1 4248 229 65 49 chr15 51345295 51347297 -50033224 + L1M2c LINE L1 2975 4768 -2797 324 221 13 0 chr15 51347289 51347366 -50033155 + L1M2c LINE L1 5464 5541 -2024 * 772 232 30 5 chr15 51347414 51347612 -50032909 + L1M2c LINE L1 5536 5738 -1827 493 204 10 10 chr15 51347608 51347771 -50032750 + L1MA6 LINE L1 12 314 -6535 * 11302 195 25 60 chr15 51347762 51350852 -50029669 + L1MA6 LINE L1 3126 6105 -743 1488 182 69 90 chr15 51350857 51351419 -50029102 + MLT2A2 LTR ERVL 1 554 0 4292 170 30 19 chr15 51351419 51352306 -50028215 + L1MA6 LINE L1 6106 7002 0 28 29 0 0 chr15 51352306 51352341 -50028180 + AT_rich Low_complexity Low_complexity 1 35 0 2132 121 0 0 chr15 51352658 51352938 -50027583 + AluSg SINE Alu 1 280 -30 539 333 42 42 chr15 51354116 51354470 -50026051 + L1M4 LINE L1 2182 2535 -3611 40012 72 4 4 chr15 51354528 51360666 -50019855 + L1PA5 LINE L1 11 6149 -5 247 65 43 0 chr15 51360699 51360745 -50019776 + (TA)n Simple_repeat Simple_repeat 1 48 0 267 197 33 0 chr15 51360774 51360835 -50019686 - L1MA9 LINE L1 -21 6291 6229 1129 125 0 24 chr15 51360838 51361006 -50019515 - AluSg/x SINE Alu -14 298 135 1039 233 44 25 chr15 51361060 51361169 -50019352 + AluJo SINE Alu 17 123 -189 239 0 32 0 chr15 51361169 51361200 -50019321 + (TAAAA)n Simple_repeat Simple_repeat 5 36 0 1039 233 44 25 chr15 51361200 51361365 -50019156 + AluJo SINE Alu 123 296 -16 2489 241 38 43 chr15 51361384 51361995 -50018526 + L1PA15 LINE L1 3 610 -6177 3632 207 17 7 chr15 51362013 51363016 -50017505 + L1PA15 LINE L1 1551 2574 -4223 7948 214 10 4 chr15 51363067 51364791 -50015730 + L1PA15 LINE L1 4106 5839 -958 1955 245 24 39 chr15 51364794 51365329 -50015192 + L1MA1 LINE L1 8 534 -7031 1021 186 0 0 chr15 51365329 51365496 -50015025 - AluJb SINE Alu -13 299 133 6350 191 108 5 chr15 51365496 51366891 -50013630 + L1MA1 LINE L1 521 2421 -5144 6194 158 19 6 chr15 51366888 51368733 -50011788 + L1PB1 LINE L1 4275 6145 -6 * 14406 163 41 9 chr15 51368756 51373876 -50006645 + L1MA1 LINE L1 2418 7717 -4 24 0 0 0 chr15 51373885 51373909 -50006612 + AT_rich Low_complexity Low_complexity 1 24 0 5578 134 28 3 chr15 51373909 51374841 -50005680 + L1PA15 LINE L1 5831 6812 -4 957 197 14 34 chr15 51375075 51375283 -50005238 + MER3 DNA MER1_type 6 209 0 258 32 0 0 chr15 51375426 51375457 -50005064 + (CA)n Simple_repeat Simple_repeat 2 32 0 879 238 146 100 chr15 51375468 51375500 -50005021 + L1MC4 LINE L1 7093 7122 -920 623 250 102 5 chr15 51375500 51375696 -50004825 + MER58C DNA MER1_type 1 215 0 879 238 146 100 chr15 51375696 51376565 -50003956 + L1MC4 LINE L1 7122 8036 -6 466 329 0 8 chr15 51377135 51377283 -50003238 + MIR3 SINE MIR 13 160 -48 3847 149 24 28 chr15 51377806 51378526 -50001995 + LTR62 LTR ERVK 1 717 -2 672 361 26 13 chr15 51380048 51380621 -49999900 + ERVL LTR ERVL 4399 4999 -765 817 271 60 11 chr15 51381209 51381490 -49999031 + LTR16A LTR ERVL 156 450 0 4905 151 34 16 chr15 51382597 51383512 -49997009 - L1MA4A LINE L1 -5 6298 5368 23 33 0 0 chr15 51384563 51384593 -49995928 + AT_rich Low_complexity Low_complexity 1 30 0 407 242 78 31 chr15 51384842 51384970 -49995551 - MIR SINE MIR -50 212 79 254 250 60 24 chr15 51385042 51385126 -49995395 + L2 LINE L2 3227 3313 0 1693 234 46 14 chr15 51385346 51386026 -49994495 + L1MA9 LINE L1 3344 4043 -3522 9949 70 48 11 chr15 51386063 51387398 -49993123 - SVA Other Other 0 1386 2 198 70 0 88 chr15 51387399 51387456 -49993065 + (GGGAGA)n Simple_repeat Simple_repeat 2 53 0 412 225 144 0 chr15 51387463 51387574 -49992947 + L1MA9 LINE L1 4035 4161 -3404 1112 204 40 9 chr15 51387597 51387925 -49992596 + L1MA9 LINE L1 4558 4895 -2670 5924 138 12 0 chr15 51387938 51388866 -49991655 - L1P LINE L1 -1231 4915 3977 10253 127 24 8 chr15 51388872 51390560 -49989961 + L1P LINE L1 2239 3957 -2189 2579 68 0 0 chr15 51390560 51390870 -49989651 + AluY SINE Alu 1 310 -1 10253 127 24 8 chr15 51390870 51390908 -49989613 + L1P LINE L1 3957 3993 -2153 1529 205 57 3 chr15 51390906 51391272 -49989249 + L1MA9 LINE L1 4998 5383 -2182 * 4429 188 24 35 chr15 51391298 51392393 -49988128 + L1MA9 LINE L1 6610 7693 -38 313 117 242 8 chr15 51392414 51392542 -49987979 + Charlie1 DNA MER1_type 2533 2690 -71 425 272 169 10 chr15 51393476 51393671 -49986850 - MIR SINE MIR -9 253 28 484 205 172 33 chr15 51394648 51394799 -49985722 - FAM SINE Alu -3 172 1 433 239 218 0 chr15 51395961 51396158 -49984363 + L1ME LINE L1 5573 5812 -309 2307 172 62 22 chr15 51396448 51396718 -49983803 + L1MB8 LINE L1 5616 5874 -304 2356 126 16 8 chr15 51396718 51397090 -49983431 + THE1C LTR MaLR 1 375 0 2307 172 62 22 chr15 51397090 51397355 -49983166 + L1MB8 LINE L1 5874 6172 -6 317 65 0 0 chr15 51398476 51398522 -49981999 + L1PA8 LINE L1 6127 6172 0 1805 153 0 49 chr15 51399017 51399344 -49981177 - AluJb SINE Alu -1 311 1 291 313 203 9 chr15 51399526 51399753 -49980768 - L3 LINE CR1 -155 1422 1152 735 333 91 38 chr15 51400158 51400761 -49979760 + HAL1 LINE L1 36 670 -1837 1177 256 151 28 chr15 51400766 51401269 -49979252 + L1ME1 LINE L1 5536 6100 -66 300 286 38 8 chr15 51401187 51401320 -49979201 + L1MA10 LINE L1 6175 6311 -23 * 530 239 134 0 chr15 51402125 51402267 -49978254 - MER5B DNA MER1_type -16 162 2 394 333 98 51 chr15 51402533 51403054 -49977467 + L2 LINE L2 2480 3018 -254 660 266 87 5 chr15 51403237 51403421 -49977100 + MIR SINE MIR 31 229 -33 216 135 0 0 chr15 51403424 51403461 -49977060 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1261 251 98 21 chr15 51403511 51403889 -49976632 + MLT1E2 LTR MaLR 38 444 -182 2111 132 3 0 chr15 51404112 51404408 -49976113 + AluSx SINE Alu 2 298 -14 320 306 24 24 chr15 51404433 51404557 -49975964 - MIR SINE MIR 0 262 139 298 226 0 0 chr15 51405073 51405135 -49975386 - L1MA5 LINE L1 -4 6296 6235 2620 179 32 54 chr15 51405147 51405707 -49974814 + Tigger1 DNA MER2_type 7 554 -1864 841 88 0 0 chr15 51405711 51405824 -49974697 - L1MA1 LINE L1 -6 6296 6184 274 95 0 0 chr15 51405824 51405866 -49974655 + L1MA3 LINE L1 6132 6173 -132 717 124 8 47 chr15 51405880 51406009 -49974512 + MSTA LTR MaLR 305 428 0 254 114 0 0 chr15 51406009 51406044 -49974477 - MLT2B2 LTR ERVL -480 35 1 1471 169 14 2 chr15 51406262 51406627 -49973894 - MSTB LTR MaLR -2 424 1 23 0 0 0 chr15 51406792 51406815 -49973706 + AT_rich Low_complexity Low_complexity 1 23 0 206 167 93 37 chr15 51407541 51407595 -49972926 + MIR3 SINE MIR 142 198 -10 252 177 16 32 chr15 51407596 51407658 -49972863 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 526 359 43 17 chr15 51407909 51408143 -49972378 + MIR SINE MIR 16 255 -7 313 377 51 75 chr15 51408293 51408747 -49971774 + L2 LINE L2 2808 3250 -22 690 258 81 54 chr15 51408805 51409098 -49971423 - MLT1J LTR MaLR -23 488 146 1386 159 95 55 chr15 51409098 51409424 -49971097 - MER44D DNA MER2_type 0 609 1 690 258 81 54 chr15 51409424 51409482 -49971039 - MLT1J LTR MaLR -365 146 91 190 175 25 25 chr15 51409637 51409677 -49970844 + L3 LINE CR1 1519 1558 -19 22 35 0 0 chr15 51409685 51409714 -49970807 + AT_rich Low_complexity Low_complexity 1 29 0 265 313 21 95 chr15 51411638 51411881 -49968640 + L1MEd LINE L1 301 525 -5594 371 232 116 18 chr15 51412008 51412120 -49968401 - MER67D LTR ERV1 -8 506 384 1028 183 14 124 chr15 51412126 51412416 -49968105 - MER67D LTR ERV1 -256 258 1 303 296 98 0 chr15 51412573 51412705 -49967816 + L1MEd LINE L1 2661 2805 -3324 25 31 0 0 chr15 51412705 51412737 -49967784 + AT_rich Low_complexity Low_complexity 1 32 0 483 276 83 26 chr15 51413240 51413299 -49967222 + MLT1J2 LTR MaLR 37 91 -359 3955 103 5 0 chr15 51413299 51413850 -49966671 - MER41A LTR ERV1 0 554 1 483 276 83 26 chr15 51413850 51413982 -49966539 + MLT1J2 LTR MaLR 91 239 -211 771 139 57 13 chr15 51414012 51414170 -49966351 + L1MA7 LINE L1 6127 6291 0 324 102 0 0 chr15 51415193 51415242 -49965279 + (T)n Simple_repeat Simple_repeat 1 49 0 460 332 75 22 chr15 51415276 51415502 -49965019 + MIR SINE MIR 9 246 -16 2384 94 0 0 chr15 51416270 51416567 -49963954 + AluSg SINE Alu 1 297 -13 2699 111 12 16 chr15 51417114 51417545 -49962976 + L1MA3 LINE L1 5877 6305 0 37 0 0 0 chr15 51417738 51417775 -49962746 + AT_rich Low_complexity Low_complexity 1 37 0 317 165 25 25 chr15 51417922 51418001 -49962520 + L1MC2 LINE L1 6255 6333 -11 1735 202 8 16 chr15 51418607 51418836 -49961685 - MLT1A1 LTR MaLR -2 363 134 1572 153 191 25 chr15 51418836 51419203 -49961318 + MSTA LTR MaLR 1 428 0 8968 143 24 41 chr15 51419205 51420808 -49959713 + MSTA-int LTR MaLR 3 1578 -2 1473 182 168 32 chr15 51420810 51421184 -49959337 + MSTA LTR MaLR 1 425 -3 1735 202 8 16 chr15 51421184 51421314 -49959207 - MLT1A1 LTR MaLR -233 132 1 458 218 0 27 chr15 51421943 51422053 -49958468 + MLT1I LTR MaLR 303 409 0 22 56 0 0 chr15 51422680 51422716 -49957805 + AT_rich Low_complexity Low_complexity 1 36 0 283 250 120 0 chr15 51422823 51422931 -49957590 - MIR SINE MIR -50 212 92 302 253 13 0 chr15 51424258 51424337 -49956184 + MIR3 SINE MIR 109 188 -20 2166 133 0 0 chr15 51425024 51425324 -49955197 - AluSx SINE Alu -12 300 1 223 348 82 70 chr15 51425391 51425831 -49954690 + L2 LINE L2 2376 2820 -494 1886 181 39 13 chr15 51425884 51425970 -49954551 + MLT2D LTR ERVL 3 85 -430 663 169 0 23 chr15 51425970 51426100 -49954421 + L1PB4 LINE L1 6028 6154 -2 1886 181 39 13 chr15 51426100 51426417 -49954104 + MLT2D LTR ERVL 85 515 0 371 275 83 0 chr15 51427014 51427123 -49953398 - MIR SINE MIR -66 142 25 564 258 50 6 chr15 51427617 51427776 -49952745 - MIR SINE MIR -13 249 84 2013 203 18 24 chr15 51428449 51428907 -49951614 - L1MA6 LINE L1 -5 7316 6862 4864 161 48 2 chr15 51428911 51429842 -49950679 - L1MA6 LINE L1 -1197 5970 4997 3613 168 42 57 chr15 51429842 51430629 -49949892 - LTR1 LTR ERV1 0 785 11 6554 233 57 14 chr15 51430643 51432700 -49947821 - L1MA6 LINE L1 -2168 4999 2851 304 347 28 7 chr15 51432857 51433001 -49947520 - L1MA6 LINE L1 -7018 150 4 1239 174 16 8 chr15 51433564 51433822 -49946699 + L1MD3 LINE L1 7736 7995 0 322 242 11 11 chr15 51433830 51433925 -49946596 + L1MC4 LINE L1 6494 6588 -1454 387 344 25 19 chr15 51434570 51434730 -49945791 + MIR3 SINE MIR 40 200 -8 516 296 68 0 chr15 51434793 51434969 -49945552 - MIR SINE MIR -34 228 41 363 266 18 18 chr15 51434971 51435084 -49945437 - L2 LINE L2 -749 2565 2453 264 238 16 0 chr15 51435699 51435762 -49944759 + MER117 DNA MER1_type 1 64 -133 262 297 33 44 chr15 51435860 51435951 -49944570 + L3 LINE CR1 1371 1460 -117 261 242 50 17 chr15 51436002 51436122 -49944399 + L1ME4a LINE L1 5994 6117 -4 768 217 24 6 chr15 51436580 51436746 -49943775 + MIR SINE MIR 69 237 -25 210 283 38 0 chr15 51436714 51436767 -49943754 + L2 LINE L2 3210 3264 -8 * 2226 105 0 3 chr15 51437141 51437435 -49943086 - AluSg SINE Alu -17 293 1 29 0 0 0 chr15 51437680 51437709 -49942812 + AT_rich Low_complexity Low_complexity 1 29 0 2163 89 3 80 chr15 51439381 51439708 -49940813 - AluSp SINE Alu -11 302 1 364 293 167 32 chr15 51439806 51440052 -49940469 + L2 LINE L2 2633 2911 -403 831 231 18 83 chr15 51440071 51440408 -49940113 + MLT2C1 LTR ERVL 17 331 -66 1826 197 47 5 chr15 51440521 51440907 -49939614 + MSTB LTR MaLR 1 402 -24 778 277 136 19 chr15 51440928 51441238 -49939283 + L2 LINE L2 2967 3312 -1 1785 201 0 0 chr15 51441964 51442273 -49938248 + AluJb SINE Alu 1 309 -3 380 300 88 6 chr15 51442669 51442829 -49937692 + L1MC/D LINE L1 5069 5241 -905 400 330 83 16 chr15 51442893 51443205 -49937316 + L1MC/D LINE L1 5313 5645 -2163 376 293 133 48 chr15 51444629 51444817 -49935704 + MIR SINE MIR 26 229 -33 889 149 60 30 chr15 51445703 51445871 -49934650 + FRAM SINE Alu 1 166 -10 382 244 118 0 chr15 51446640 51446759 -49933762 - MIR SINE MIR -6 256 124 630 270 42 5 chr15 51446832 51447021 -49933500 + MIR SINE MIR 12 207 -55 252 284 48 25 chr15 51447254 51447346 -49933175 - MIR SINE MIR -71 137 45 1976 159 108 16 chr15 51447391 51447648 -49932873 - MLT1C LTR MaLR 0 467 235 414 0 0 0 chr15 51447648 51447694 -49932827 + (TG)n Simple_repeat Simple_repeat 2 47 0 1976 159 108 16 chr15 51447694 51447864 -49932657 - MLT1C LTR MaLR -232 235 1 1847 215 20 16 chr15 51448495 51448941 -49931580 + L1MA10 LINE L1 5874 6321 -13 617 291 48 65 chr15 51448961 51449191 -49931330 - MIR SINE MIR -19 243 18 367 364 120 7 chr15 51449612 51449903 -49930618 - L1 LINE L1 -1127 5019 4696 3149 184 45 106 chr15 51449929 51450896 -49929625 - MER21A LTR ERV1 -6 925 17 2131 135 3 3 chr15 51451041 51451352 -49929169 + AluSq SINE Alu 3 313 0 440 285 37 48 chr15 51451498 51451768 -49928753 - L1 LINE L1 -2800 3346 3080 21 71 0 0 chr15 51451799 51451841 -49928680 + AT_rich Low_complexity Low_complexity 1 42 0 2219 130 0 0 chr15 51452012 51452320 -49928201 - AluSg SINE Alu -2 308 1 348 24 0 0 chr15 51453315 51453356 -49927165 + (CA)n Simple_repeat Simple_repeat 1 41 0 477 339 76 5 chr15 51454144 51454368 -49926153 + MIR SINE MIR 13 252 -10 2458 76 0 3 chr15 51455018 51455322 -49925199 - AluY SINE Alu -8 303 1 28608 113 11 68 chr15 51455983 51461133 -49919388 + L1PA7 LINE L1 1 4687 -1467 2399 90 0 6 chr15 51461133 51461444 -49919077 + AluSg SINE Alu 1 309 -1 28608 113 11 68 chr15 51461444 51462832 -49917689 + L1PA7 LINE L1 4687 6153 -1 188 57 0 57 chr15 51463135 51463170 -49917351 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 311 220 192 10 chr15 51463339 51463539 -49916982 - MER5C DNA MER1_type -2 322 14 433 238 112 24 chr15 51463558 51463860 -49916661 + L1MEd LINE L1 1016 1381 -4865 1535 155 48 16 chr15 51463879 51464189 -49916332 + L1MC/D LINE L1 5290 5609 -724 825 281 98 39 chr15 51464202 51464643 -49915878 + L1M3b LINE L1 1219 1685 -5811 6365 225 57 16 chr15 51465060 51468318 -49912203 + L1M3b LINE L1 2078 5409 -2156 1094 293 48 9 chr15 51468331 51468856 -49911665 + L1PBa LINE L1 7 551 -6312 225 287 85 57 chr15 51468887 51469169 -49911352 - HAL1 LINE L1 -963 1544 1255 226 269 192 13 chr15 51470753 51470831 -49909690 - MIR SINE MIR -75 133 42 651 238 122 0 chr15 51471072 51471219 -49909302 - FAM SINE Alu -8 41 1 1118 162 0 0 chr15 51472290 51472463 -49908058 + AluJo SINE Alu 127 299 -13 8482 179 43 30 chr15 51472582 51475551 -49904970 + L1MA7 LINE L1 3287 6289 -2 2489 74 0 0 chr15 51476032 51476342 -49904179 + AluY SINE Alu 1 310 -1 1343 229 56 20 chr15 51476517 51476949 -49903572 + L1MC4a LINE L1 6604 6999 -809 21872 59 2 2 chr15 51476961 51479879 -49900642 + L1PA3 LINE L1 9 2926 -3220 309 238 0 0 chr15 51480042 51480143 -49900378 + A-rich Low_complexity Low_complexity 1 101 0 210 136 34 17 chr15 51480245 51480304 -49900217 + GA-rich Low_complexity Low_complexity 1 60 0 19685 33 5 0 chr15 51480307 51483470 -49897051 + L1PA3 LINE L1 2986 6152 -3 1989 248 60 41 chr15 51483481 51484291 -49896230 + L1MC4a LINE L1 6983 7808 0 275 270 40 0 chr15 51484394 51484468 -49896053 - L2 LINE L2 -12 3260 3184 214 286 0 0 chr15 51484583 51484632 -49895889 - L2 LINE L2 -352 2961 2913 2155 101 34 0 chr15 51485793 51486090 -49894431 - AluSx SINE Alu -5 307 1 4407 217 22 0 chr15 51486166 51487046 -49893475 + MER54A LTR ERVL 3 901 0 28 0 0 0 chr15 51487143 51487171 -49893350 + AT_rich Low_complexity Low_complexity 1 28 0 1862 144 7 17 chr15 51487625 51487917 -49892604 + AluJb SINE Alu 1 289 -23 294 247 97 11 chr15 51487965 51488058 -49892463 + Charlie8 DNA MER1_type 127 227 -2190 204 339 118 16 chr15 51488759 51488886 -49891635 - MIR3 SINE MIR -31 177 38 211 263 232 0 chr15 51489495 51489594 -49890927 + MIR SINE MIR 63 184 -78 303 202 8 143 chr15 51489682 51489801 -49890720 + MIR3 SINE MIR 94 196 -12 252 59 0 0 chr15 51491080 51491114 -49889407 + (TG)n Simple_repeat Simple_repeat 1 34 0 1978 122 29 35 chr15 51491116 51491493 -49889028 - L1MA3 LINE L1 -44 6261 5887 * 2559 158 39 54 chr15 51491477 51491792 -49888729 - L1 LINE L1 -1509 6056 5753 2898 26 0 6 chr15 51491792 51492134 -49888387 + L1PA5 LINE L1 5809 6148 -6 2559 158 39 54 chr15 51492134 51492431 -49888090 - L1 LINE L1 -1812 5753 5453 2279 178 97 21 chr15 51492432 51492905 -49887616 + LTR22 LTR ERVK 1 509 0 4447 134 17 0 chr15 51492905 51493642 -49886879 + HERVK22 LTR ERVK 1 786 -6051 * 19689 101 9 10 chr15 51493635 51496793 -49883728 + HERVK22 LTR ERVK 2314 6837 0 1207 226 96 12 chr15 51496793 51497199 -49883322 + LTR22 LTR ERVK 1 509 0 19228 169 85 14 chr15 51497200 51502263 -49878258 - L1 LINE L1 -2109 5456 12 235 352 72 51 chr15 51502542 51502874 -49877647 + L2 LINE L2 2914 3252 -20 246 353 52 60 chr15 51503060 51503312 -49877209 + L2 LINE L2 1042 1291 -2023 235 323 91 55 chr15 51503641 51503861 -49876660 - MLT1L LTR MaLR -11 604 377 370 218 139 0 chr15 51503936 51504037 -49876484 - MLT1L LTR MaLR -337 278 164 332 310 90 7 chr15 51504855 51505010 -49875511 + MIR SINE MIR 85 252 -10 562 268 138 18 chr15 51505065 51505289 -49875232 - MIR SINE MIR 0 262 12 287 281 153 36 chr15 51505511 51505707 -49874814 + MIR SINE MIR 44 262 0 303 28 0 0 chr15 51506003 51506039 -49874482 + (CA)n Simple_repeat Simple_repeat 1 36 0 5047 81 17 1 chr15 51506112 51506800 -49873721 + L1PA8 LINE L1 5474 6172 0 1245 108 18 0 chr15 51507592 51507758 -49872763 + AluSg/x SINE Alu 131 299 -13 2280 177 31 15 chr15 51508504 51509045 -49871476 - L1PB4 LINE L1 -1278 4868 4319 1930 183 39 22 chr15 51509045 51509619 -49870902 + L1PB4 LINE L1 4881 5463 -693 4165 118 67 1 chr15 51509619 51510280 -49870241 - L1PA11 LINE L1 -4 6170 5467 1930 183 39 22 chr15 51510280 51510322 -49870199 + L1PB4 LINE L1 5463 5503 -653 1982 171 55 17 chr15 51510322 51510726 -49869795 + L1PB4 LINE L1 5731 6149 -7 2437 62 0 10 chr15 51510915 51511220 -49869301 + AluY SINE Alu 1 302 -9 28 0 0 0 chr15 51512012 51512040 -49868481 + AT_rich Low_complexity Low_complexity 1 28 0 1540 192 10 24 chr15 51512235 51512527 -49867994 + AluJo SINE Alu 1 288 -24 2122 116 7 3 chr15 51513267 51513569 -49866952 + AluSp SINE Alu 7 309 -4 13986 161 29 7 chr15 51514114 51520558 -49859963 + L1MA1 LINE L1 1136 7721 0 29 47 0 0 chr15 51520558 51520601 -49859920 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr15 51520939 51520961 -49859560 + AT_rich Low_complexity Low_complexity 1 22 0 315 308 63 20 chr15 51521949 51522202 -49858319 + L1ME4a LINE L1 5602 5865 -256 272 204 133 9 chr15 51522286 51522399 -49858122 + L1ME4a LINE L1 5969 6095 -26 2236 92 7 0 chr15 51523381 51523663 -49856858 + AluSx SINE Alu 11 294 -18 225 281 44 9 chr15 51524050 51524164 -49856357 - MER103 DNA DNA -3 163 46 2585 181 64 10 chr15 51524334 51525014 -49855507 - L1MA8 LINE L1 -1 7015 6275 9773 188 103 16 chr15 51525014 51525235 -49855286 - L1MA8 LINE L1 -1756 5106 4906 2321 88 0 3 chr15 51525235 51525529 -49854992 - AluY SINE Alu -18 293 1 9773 188 103 16 chr15 51525529 51525710 -49854811 - L1MA8 LINE L1 -1956 4906 4742 2427 96 6 11 chr15 51525710 51526073 -49854448 - L1PB1 LINE L1 0 6151 5791 9773 188 103 16 chr15 51526073 51527819 -49852702 - L1MA8 LINE L1 -2120 4742 3150 360 0 0 0 chr15 51527819 51527859 -49852662 + (TG)n Simple_repeat Simple_repeat 2 41 0 9773 188 103 16 chr15 51527859 51529595 -49850926 - L1MA8 LINE L1 -3712 3150 764 3311 238 60 21 chr15 51529596 51530443 -49850078 - L1 LINE L1 -3124 3982 3170 1778 175 3 10 chr15 51530443 51530751 -49849770 - AluSx SINE Alu 0 312 7 3311 238 60 21 chr15 51530751 51531655 -49848866 - L1 LINE L1 -3936 3170 2187 306 0 0 0 chr15 51531655 51531689 -49848832 + (T)n Simple_repeat Simple_repeat 1 34 0 2770 22 11 8 chr15 51531691 51532053 -49848468 - L1HS LINE L1 0 6155 5793 30728 35 22 1 chr15 51532314 51537631 -49842890 - L1P1 LINE L1 -687 5468 2 346 276 46 7 chr15 51537631 51537773 -49842748 + L1ME3 LINE L1 5699 5837 -324 * 1455 256 92 39 chr15 51537768 51537798 -49842723 - L1 LINE L1 -4732 2305 2278 1838 84 8 42 chr15 51537798 51538060 -49842461 - AluY SINE Alu -10 301 49 1455 256 92 39 chr15 51538060 51539019 -49841502 - L1 LINE L1 -4759 2278 1371 2231 156 43 14 chr15 51539019 51539435 -49841086 - MSTA LTR MaLR 0 428 1 1455 256 92 39 chr15 51539435 51539632 -49840889 - L1 LINE L1 -5666 1371 9 427 261 173 13 chr15 51539665 51539972 -49840549 - LTR37A LTR ERV1 -33 393 38 3948 229 99 23 chr15 51540223 51541606 -49838915 - L1PBa LINE L1 -3717 3145 1653 1647 149 21 14 chr15 51541606 51541894 -49838627 + L1PB3 LINE L1 5855 6144 -10 2229 60 3 0 chr15 51542384 51542666 -49837855 - L1PA7 LINE L1 -5 6149 5867 380 312 24 8 chr15 51543250 51543375 -49837146 + L2 LINE L2 3187 3313 0 333 344 115 34 chr15 51544079 51544229 -49836292 - L1M4 LINE L1 -3381 2765 2629 1138 249 8 0 chr15 51544229 51544466 -49836055 - MER8 DNA MER2_type 0 239 1 333 344 115 34 chr15 51544466 51544731 -49835790 - L1M4 LINE L1 -3517 2629 2316 2044 176 102 127 chr15 51544783 51545499 -49835022 - L1ME1 LINE L1 -12 6154 5457 998 278 41 17 chr15 51546282 51546627 -49833894 - L3 LINE CR1 -439 1138 786 730 166 199 0 chr15 51547589 51547740 -49832781 - L1PB4 LINE L1 -12 6144 5964 2174 140 84 15 chr15 51547740 51547946 -49832575 + L1PB4 LINE L1 5519 5709 -447 2586 139 64 2 chr15 51547946 51548384 -49832137 + MER4C LTR ERV1 1 465 0 2174 140 84 15 chr15 51548384 51548436 -49832085 + L1PB4 LINE L1 5709 5756 -400 270 0 0 0 chr15 51548436 51548466 -49832055 + (CA)n Simple_repeat Simple_repeat 2 31 0 2174 140 84 15 chr15 51548466 51548612 -49831909 + L1PB4 LINE L1 5756 5952 -204 817 298 84 14 chr15 51548726 51549095 -49831426 - L1ME LINE L1 -358 5804 5410 1614 171 46 140 chr15 51549137 51549657 -49830864 - MER67D LTR ERV1 -43 471 1 373 266 98 23 chr15 51549662 51549876 -49830645 - L1ME LINE L1 -769 5377 5148 279 207 49 12 chr15 51550056 51550138 -49830383 - L1ME LINE L1 -1299 4847 4763 33898 72 6 11 chr15 51550293 51555749 -49824772 + L1PA6 LINE L1 727 6153 -1 1229 163 50 10 chr15 51555768 51556147 -49824374 - L1P4 LINE L1 -694 5472 5082 1249 315 157 22 chr15 51556202 51556984 -49823537 + L3 LINE CR1 637 1524 -53 317 331 46 26 chr15 51557080 51557231 -49823290 - MIR3 SINE MIR -10 198 45 242 330 45 28 chr15 51558237 51558413 -49822108 - L1ME LINE L1 -583 5583 5405 208 268 71 18 chr15 51559279 51559335 -49821186 - MIR SINE MIR -58 150 92 393 258 21 0 chr15 51560117 51560210 -49820311 - MER5A DNA MER1_type -85 104 10 26 0 0 0 chr15 51563322 51563348 -49817173 + AT_rich Low_complexity Low_complexity 1 26 0 236 328 74 8 chr15 51563686 51563808 -49816713 + L2 LINE L2 3173 3302 -11 432 294 75 19 chr15 51565368 51565528 -49814993 + MIR SINE MIR 13 181 -81 220 329 24 0 chr15 51566313 51566395 -49814126 + MIR3 SINE MIR 115 198 -10 184 286 0 0 chr15 51566721 51566770 -49813751 - MIR3 SINE MIR 0 208 160 206 160 0 120 chr15 51567199 51567249 -49813272 + L2 LINE L2 3234 3277 -36 205 143 86 0 chr15 51567223 51567258 -49813263 + MIR SINE MIR 207 244 -18 * 480 280 69 15 chr15 51570027 51570370 -49810151 + L1ME LINE L1 1357 1844 -5145 316 346 0 39 chr15 51570394 51570547 -49809974 + MLT1H LTR MaLR 57 203 -346 237 189 0 19 chr15 51570795 51570848 -49809673 + MLT1D LTR MaLR 447 498 -7 331 276 79 33 chr15 51570848 51571000 -49809521 + L1ME LINE L1 2104 2262 -4695 317 200 67 38 chr15 51571100 51571204 -49809317 - L1MB7 LINE L1 0 6184 6071 232 286 27 45 chr15 51571216 51571328 -49809193 - L1MEc LINE L1 -4403 1993 1884 630 236 51 0 chr15 51571361 51571518 -49809003 - L1ME1 LINE L1 -98 6068 5904 1252 185 78 4 chr15 51571518 51571750 -49808771 - MLT1A1 LTR MaLR 0 365 117 1786 194 97 25 chr15 51572926 51573358 -49807163 + L1MB1 LINE L1 4557 5019 -1127 1332 172 76 31 chr15 51573358 51573731 -49806790 + L1MB1 LINE L1 5221 5608 -560 * 6422 95 8 0 chr15 51573726 51574794 -49805727 - L1PA7 LINE L1 -615 5539 4467 4551 68 12 2 chr15 51574794 51575389 -49805132 + L1PA7 LINE L1 5539 6143 -11 1229 139 0 5 chr15 51575443 51575644 -49804877 + L1MB1 LINE L1 5593 5792 -542 2524 221 31 40 chr15 51575647 51576198 -49804323 - MLT2B3 LTR ERVL -7 547 2 2057 136 38 22 chr15 51576198 51576566 -49803955 + L1MB1 LINE L1 5787 6160 -8 266 281 24 54 chr15 51576737 51576904 -49803617 + L1 LINE L1 3863 4024 -2122 237 31 0 0 chr15 51576982 51577014 -49803507 + L1 LINE L1 4677 4708 -1438 2551 156 64 2 chr15 51577029 51577543 -49802978 + L1MA8 LINE L1 5734 6279 -12 264 221 76 38 chr15 51577561 51577719 -49802802 + L1 LINE L1 4255 4418 -1728 346 287 64 25 chr15 51577932 51578161 -49802360 + L1MC/D LINE L1 5272 5514 -650 343 250 33 76 chr15 51578906 51579090 -49801431 + L1MC5 LINE L1 7752 7927 -34 647 213 18 30 chr15 51580084 51580253 -49800268 - MER5A DNA MER1_type -1 188 22 297 303 83 9 chr15 51580501 51580610 -49799911 - L2 LINE L2 -1 3312 3196 294 261 321 0 chr15 51580657 51580791 -49799730 - MER91A DNA MER1_type -1 195 19 2152 58 0 0 chr15 51580799 51581058 -49799463 - AluY SINE Alu -52 259 1 233 243 153 9 chr15 51581493 51581604 -49798917 - L1ME LINE L1 -281 5883 5757 349 333 53 12 chr15 51582114 51582285 -49798236 + MER5B DNA MER1_type 1 178 0 275 262 12 12 chr15 51582321 51582405 -49798116 - MLT1L LTR MaLR -2 613 530 787 172 141 6 chr15 51582695 51582858 -49797663 - MER5A DNA MER1_type -3 186 2 1378 69 53 0 chr15 51582902 51583091 -49797430 - L1PA8 LINE L1 -1 6171 5973 1599 212 158 19 chr15 51583189 51583666 -49796855 + MLT1F LTR MaLR 1 542 0 391 233 0 86 chr15 51584046 51584114 -49796407 + MER5A DNA MER1_type 1 57 -132 1235 92 0 6 chr15 51584114 51584287 -49796234 + L1PB1 LINE L1 5978 6149 -2 391 233 0 86 chr15 51584287 51584334 -49796187 + MER5A DNA MER1_type 57 106 -83 471 257 46 26 chr15 51584407 51584559 -49795962 - MER5B DNA MER1_type 0 178 24 663 220 40 17 chr15 51584821 51584994 -49795527 + MER5B DNA MER1_type 1 177 -1 180 260 55 55 chr15 51585190 51585263 -49795258 + MIR SINE MIR 77 149 -113 265 335 162 17 chr15 51585344 51585517 -49795004 - MIR SINE MIR -63 199 2 2379 295 63 45 chr15 51586358 51587570 -49792951 + L2 LINE L2 1612 2846 -468 1667 181 84 14 chr15 51587621 51588342 -49792179 + L1MC3 LINE L1 6765 7641 -144 22 56 0 0 chr15 51588353 51588389 -49792132 + AT_rich Low_complexity Low_complexity 1 36 0 648 228 188 0 chr15 51588749 51588898 -49791623 - MER5A DNA MER1_type -11 178 2 297 0 0 0 chr15 51589027 51589060 -49791461 + (A)n Simple_repeat Simple_repeat 1 33 0 560 267 33 22 chr15 51589150 51589330 -49791191 + MLT1L LTR MaLR 424 605 -10 1100 291 25 65 chr15 51589333 51589842 -49790679 + L2 LINE L2 2823 3311 -2 2464 76 0 0 chr15 51590133 51590436 -49790085 - AluY SINE Alu -8 303 1 23 68 0 0 chr15 51591188 51591232 -49789289 + AT_rich Low_complexity Low_complexity 1 44 0 230 156 0 0 chr15 51591438 51591483 -49789038 + A-rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr15 51592806 51592830 -49787691 + AT_rich Low_complexity Low_complexity 1 24 0 2024 206 41 95 chr15 51592934 51593668 -49786853 - LTR8A LTR ERV1 0 727 34 2966 175 78 34 chr15 51594264 51594944 -49785577 + MER67C LTR ERV1 1 710 0 213 108 0 0 chr15 51595157 51595194 -49785327 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 286 241 51 0 chr15 51595753 51595832 -49784689 + MER117 DNA MER1_type 17 99 -98 2435 183 22 10 chr15 51596048 51596546 -49783975 + L1P3 LINE L1 1 504 -5371 23642 148 20 19 chr15 51596563 51598611 -49781910 + L1P3 LINE L1 797 2843 -3626 1714 113 0 4 chr15 51598611 51598841 -49781680 - AluY SINE Alu -22 289 61 23642 148 20 19 chr15 51598841 51600012 -49780509 + L1P3 LINE L1 2843 4012 -2457 369 0 0 0 chr15 51600012 51600053 -49780468 + (CA)n Simple_repeat Simple_repeat 2 42 0 23642 148 20 19 chr15 51600053 51601795 -49778726 + L1P3 LINE L1 4012 5755 -714 196 230 18 26 chr15 51601908 51602021 -49778500 + GA-rich Low_complexity Low_complexity 1 112 0 192 163 0 0 chr15 51602049 51602092 -49778429 + G-rich Low_complexity Low_complexity 1 43 0 6641 74 7 1 chr15 51602176 51603336 -49777185 + L1PA6 LINE L1 4990 6153 -1 1145 163 50 10 chr15 51603355 51603734 -49776787 - L1P4 LINE L1 -694 5472 5082 1225 318 156 20 chr15 51603789 51604571 -49775950 + L3 LINE CR1 637 1524 -53 321 331 46 26 chr15 51604667 51604818 -49775703 - MIR3 SINE MIR -10 198 45 366 368 53 10 chr15 51605825 51606034 -49774487 - L1ME LINE L1 -583 5583 5366 206 268 71 18 chr15 51606867 51606923 -49773598 - MIR SINE MIR -58 150 92 396 258 21 0 chr15 51607705 51607798 -49772723 - MER5A DNA MER1_type -85 104 10 26 0 0 0 chr15 51610911 51610937 -49769584 + AT_rich Low_complexity Low_complexity 1 26 0 239 328 74 8 chr15 51611275 51611397 -49769124 + L2 LINE L2 3173 3302 -11 432 294 75 19 chr15 51612957 51613117 -49767404 + MIR SINE MIR 13 181 -81 214 329 24 0 chr15 51613903 51613985 -49766536 + MIR3 SINE MIR 115 198 -10 183 286 0 0 chr15 51614311 51614360 -49766161 - MIR3 SINE MIR 0 208 160 210 160 0 120 chr15 51614789 51614839 -49765682 + L2 LINE L2 3234 3277 -36 207 143 86 0 chr15 51614813 51614848 -49765673 + MIR SINE MIR 207 244 -18 * 432 281 50 19 chr15 51617659 51617960 -49762561 + L1M4b LINE L1 940 1427 -5294 349 275 74 34 chr15 51618420 51618591 -49761930 + L1M4b LINE L1 1685 1845 -4695 294 195 81 46 chr15 51618708 51618795 -49761726 - L1ME1 LINE L1 -6 6160 6071 319 298 24 40 chr15 51618807 51618931 -49761590 - L1MEc LINE L1 -4403 1993 1872 583 236 51 0 chr15 51618952 51619109 -49761412 - L1ME1 LINE L1 -98 6068 5904 1170 185 78 4 chr15 51619109 51619341 -49761180 - MLT1A1 LTR MaLR 0 365 117 1660 194 97 25 chr15 51620512 51620944 -49759577 + L1M3 LINE L1 4557 5019 -1127 1240 171 76 31 chr15 51620944 51621317 -49759204 + L1M3 LINE L1 5221 5608 -560 * 16898 31 1 0 chr15 51621312 51623566 -49756955 - L1P1 LINE L1 -616 5539 3284 191 213 81 125 chr15 51623697 51623833 -49756688 - L2 LINE L2 -1076 2238 2109 774 278 50 21 chr15 51624315 51624556 -49755965 + MIR SINE MIR 1 248 -14 313 356 106 15 chr15 51624927 51625059 -49755462 - MIR3 SINE MIR -54 154 11 1017 181 25 0 chr15 51625672 51625876 -49754645 + L1MD2 LINE L1 6150 6358 -1 297 217 72 12 chr15 51626002 51626085 -49754436 - MIR SINE MIR -93 169 82 450 295 125 36 chr15 51626090 51626314 -49754207 + LTR67 LTR ERVL 2 245 -312 315 266 38 25 chr15 51626429 51626587 -49753934 + LTR67 LTR ERVL 394 553 -4 1931 183 19 22 chr15 51628831 51629197 -49751324 + MLT1A1 LTR MaLR 1 365 0 443 286 29 29 chr15 51629897 51630072 -49750449 - MIR3 SINE MIR -9 199 25 195 255 20 0 chr15 51630358 51630409 -49750112 - MER5A DNA MER1_type 0 189 138 195 42 0 0 chr15 51630654 51630678 -49749843 + (TCTA)n Simple_repeat Simple_repeat 1 24 0 5664 109 30 24 chr15 51630707 51631780 -49748741 - L1PA13 LINE L1 -4 6159 5070 318 304 0 22 chr15 51631911 51632003 -49748518 + L1MC4 LINE L1 6614 6703 -1339 * 327 227 45 23 chr15 51631945 51632033 -49748488 - L1MC4 LINE L1 -1339 6703 6614 2034 107 17 10 chr15 51632037 51632326 -49748195 - AluSc SINE Alu -18 291 1 1252 150 41 59 chr15 51632593 51632932 -49747589 - L1MA4A LINE L1 -245 6760 6428 * 3484 178 36 1 chr15 51632931 51633677 -49746844 - L1MA4A LINE L1 -780 6068 5297 * 10661 207 66 17 chr15 51633660 51634300 -49746221 - L1MA4A LINE L1 -4102 2747 2139 1674 201 7 3 chr15 51634300 51634594 -49745927 - AluJb SINE Alu -17 295 1 10661 207 66 17 chr15 51634594 51636570 -49743951 - L1MA4A LINE L1 -4710 2139 4 271 266 156 23 chr15 51636704 51636877 -49743644 - MIR3 SINE MIR -5 203 8 726 340 84 60 chr15 51637411 51637814 -49742707 - L2 LINE L2 0 3272 2860 828 335 118 30 chr15 51638551 51639384 -49741137 + L2 LINE L2 2374 3272 0 3590 182 67 8 chr15 51639527 51640301 -49740220 - L1MB8 LINE L1 -6 6172 5353 1290 156 26 136 chr15 51641083 51641422 -49739099 + AluJo SINE Alu 11 312 0 221 308 217 0 chr15 51642046 51642166 -49738355 + MIR SINE MIR 61 206 -56 201 374 116 13 chr15 51642964 51643119 -49737402 - L2 LINE L2 -5 3267 3097 182 304 72 0 chr15 51643519 51643588 -49736933 - MIR SINE MIR -13 249 176 2198 115 0 3 chr15 51643736 51644031 -49736490 - AluSx SINE Alu -18 294 1 2782 246 123 0 chr15 51644752 51645543 -49734978 + L2 LINE L2 1880 2767 -547 1092 229 110 48 chr15 51645641 51646205 -49734316 - L1MC4 LINE L1 0 8042 7444 445 269 113 60 chr15 51646856 51647306 -49733215 - L1ME LINE L1 -330 5791 5318 792 223 141 61 chr15 51647984 51648311 -49732210 + MLT1A1 LTR MaLR 13 365 0 391 294 88 22 chr15 51648354 51648490 -49732031 + L2 LINE L2 3127 3271 -1 224 242 132 33 chr15 51649285 51649376 -49731145 - MIR3 SINE MIR -2 206 107 2045 192 129 2 chr15 51649740 51650188 -49730333 + MLT1D LTR MaLR 1 505 0 254 312 56 68 chr15 51650288 51650538 -49729983 + L2 LINE L2 2882 3128 -144 4318 180 40 21 chr15 51650677 51651379 -49729142 - L1MB3 LINE L1 0 6183 5440 486 96 0 0 chr15 51651379 51651452 -49729069 + (TAG)n Simple_repeat Simple_repeat 3 75 0 4318 180 40 21 chr15 51651452 51652001 -49728520 - L1MB3 LINE L1 -743 5440 4903 2144 81 36 36 chr15 51652775 51653082 -49727439 - AluSg SINE Alu -3 307 1 229 89 44 0 chr15 51654218 51654263 -49726258 + (TA)n Simple_repeat Simple_repeat 1 47 0 243 0 0 0 chr15 51654264 51654291 -49726230 + (GA)n Simple_repeat Simple_repeat 2 28 0 345 289 21 42 chr15 51654441 51654583 -49725938 + MIR SINE MIR 2 140 -122 3329 260 58 53 chr15 51654777 51655419 -49725102 + L1MEc LINE L1 41 678 -5718 393 84 0 0 chr15 51655419 51655490 -49725031 + L1MA7 LINE L1 6221 6291 0 3329 260 58 53 chr15 51655490 51656435 -49724086 + L1MEc LINE L1 678 1636 -4760 22503 46 44 2 chr15 51656442 51659443 -49721078 + L1P LINE L1 2 3126 -3020 2186 149 26 11 chr15 51659556 51660013 -49720508 + L1PA8 LINE L1 5704 6167 -5 34 24 0 0 chr15 51660013 51660054 -49720467 + AT_rich Low_complexity Low_complexity 1 41 0 466 292 35 28 chr15 51660334 51660478 -49720043 - MIR3 SINE MIR -13 195 51 234 62 0 0 chr15 51662242 51662274 -49718247 + (GA)n Simple_repeat Simple_repeat 1 32 0 619 239 0 22 chr15 51662847 51662985 -49717536 + MER58A DNA MER1_type 1 135 0 21 0 0 0 chr15 51663348 51663369 -49717152 + AT_rich Low_complexity Low_complexity 1 21 0 290 242 30 0 chr15 51663419 51663485 -49717036 - L2 LINE L2 0 3313 3246 2155 163 25 50 chr15 51663731 51664168 -49716353 - MSTB LTR MaLR 0 426 1 4521 190 35 3 chr15 51664168 51665047 -49715474 - MSTB-int LTR MaLR 0 1651 745 2536 117 3 16 chr15 51665066 51665433 -49715088 - THE1B LTR MaLR 0 364 3 5077 122 5 5 chr15 51665435 51666196 -49714325 - THE1B-int LTR MaLR 0 1580 820 1697 218 45 16 chr15 51666224 51666670 -49713851 + MLT1C LTR MaLR 9 467 0 233 168 84 11 chr15 51667459 51667554 -49712967 + (TG)n Simple_repeat Simple_repeat 1 102 0 21 0 0 0 chr15 51668183 51668204 -49712317 + AT_rich Low_complexity Low_complexity 1 21 0 365 153 45 6 chr15 51668220 51668377 -49712144 + (TTATA)n Simple_repeat Simple_repeat 5 167 0 323 326 80 17 chr15 51668654 51668829 -49711692 - MIR3 SINE MIR -7 201 16 209 191 11 146 chr15 51670034 51670083 -49710438 - MIR3 SINE MIR -46 162 129 2408 43 7 7 chr15 51670083 51670383 -49710138 + AluY SINE Alu 1 300 -11 209 191 11 146 chr15 51670383 51670422 -49710099 - MIR3 SINE MIR -79 129 86 710 265 90 37 chr15 51670432 51670809 -49709712 - MLT1I LTR MaLR -10 399 3 224 342 13 26 chr15 51670811 51670887 -49709634 - MIR SINE MIR -118 90 16 239 88 0 0 chr15 51672025 51672059 -49708462 + LTR33A LTR ERVL 490 523 0 1688 251 117 41 chr15 51672177 51673010 -49707511 + L2 LINE L2 639 3304 -9 1158 250 128 16 chr15 51673217 51673593 -49706928 + LTR16C LTR ERVL 74 491 0 2978 252 308 66 chr15 51674421 51676001 -49704520 + L2 LINE L2 41 1237 -2076 316 180 33 77 chr15 51676001 51676105 -49704416 - MLT1E1 LTR MaLR -456 198 52 2978 252 308 66 chr15 51676105 51676128 -49704393 + L2 LINE L2 1237 1253 -2060 2493 129 3 3 chr15 51676128 51676492 -49704029 + THE1B LTR MaLR 1 364 0 2978 252 308 66 chr15 51676492 51677196 -49703325 + L2 LINE L2 1253 3038 -275 224 317 0 0 chr15 51677470 51677530 -49702991 - L2 LINE L2 0 3272 3213 285 370 20 14 chr15 51677555 51677701 -49702820 - MIR3 SINE MIR -58 150 4 283 203 0 62 chr15 51678078 51678142 -49702379 - MIR SINE MIR -14 248 189 233 333 177 0 chr15 51679797 51679893 -49700628 - L3 LINE CR1 -2 1575 1463 2700 19 0 3 chr15 51680412 51680719 -49699802 - AluY SINE Alu -5 306 1 24 0 0 0 chr15 51681221 51681245 -49699276 + AT_rich Low_complexity Low_complexity 1 24 0 1793 152 3 28 chr15 51681331 51681621 -49698900 - AluJo SINE Alu -21 291 9 183 278 134 10 chr15 51681709 51681806 -49698715 + MIR SINE MIR 8 116 -146 617 302 94 0 chr15 51682325 51682517 -49698004 - MIR SINE MIR -51 211 2 282 371 30 23 chr15 51682530 51682662 -49697859 - L2 LINE L2 -1 3312 3180 727 212 46 131 chr15 51682692 51682975 -49697546 - MIR SINE MIR 0 262 4 326 347 116 16 chr15 51683048 51683290 -49697231 - L2 LINE L2 -189 3083 2818 703 258 70 8 chr15 51683474 51683718 -49696803 + MIR SINE MIR 2 260 -2 2276 57 0 0 chr15 51684755 51685081 -49695440 + AluY SINE Alu 1 326 0 1193 91 13 0 chr15 51685081 51685258 -49695263 + AluSg/x SINE Alu 126 304 0 225 94 0 0 chr15 51685581 51685613 -49694908 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1112 88 13 19 chr15 51685613 51685795 -49694726 + AluSg/x SINE Alu 126 306 0 474 216 24 8 chr15 51686048 51686173 -49694348 - MER20 DNA MER1_type -2 217 91 475 159 21 97 chr15 51686178 51686323 -49694198 + MLT1C LTR MaLR 6 139 -328 2462 134 29 2 chr15 51686337 51686826 -49693695 - L1MA9 LINE L1 -609 5682 5184 2021 150 13 24 chr15 51686836 51686920 -49693601 + L1MA9 LINE L1 5706 5789 -523 351 0 0 0 chr15 51686920 51686959 -49693562 + (CA)n Simple_repeat Simple_repeat 2 40 0 2021 150 13 24 chr15 51686959 51687254 -49693267 + L1MA9 LINE L1 5789 6081 -231 385 202 11 0 chr15 51687260 51687349 -49693172 + L1MA9 LINE L1 6184 6273 -39 957 174 128 114 chr15 51687377 51687728 -49692793 + MLT1C LTR MaLR 112 467 0 541 143 0 0 chr15 51687733 51687817 -49692704 - MER20 DNA MER1_type -135 84 1 387 300 50 38 chr15 51688407 51688804 -49691717 - L1M4 LINE L1 -1258 4888 4487 1424 150 66 51 chr15 51688882 51689156 -49691365 + AluSx SINE Alu 14 291 -21 370 249 81 69 chr15 51689864 51690037 -49690484 + L2 LINE L2 2886 3060 -212 25 31 0 0 chr15 51690121 51690153 -49690368 + AT_rich Low_complexity Low_complexity 1 32 0 320 336 32 24 chr15 51690222 51690347 -49690174 + L2 LINE L2 3116 3241 -31 1811 153 0 49 chr15 51690368 51690676 -49689845 + AluJb SINE Alu 1 293 -19 266 73 24 0 chr15 51690716 51690757 -49689764 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 22 103 0 0 chr15 51691401 51691479 -49689042 + AT_rich Low_complexity Low_complexity 1 78 0 309 109 0 0 chr15 51692388 51692434 -49688087 + (CA)n Simple_repeat Simple_repeat 2 47 0 1258 163 19 116 chr15 51692970 51693289 -49687232 + AluJo SINE Alu 5 292 -20 49 18 0 0 chr15 51693313 51693369 -49687152 + AT_rich Low_complexity Low_complexity 1 56 0 30205 49 14 2 chr15 51694814 51694904 -49685617 + L1PA8A LINE L1 1310 1397 -4734 180 0 0 0 chr15 51694904 51694924 -49685597 + (AAATG)n Simple_repeat Simple_repeat 5 24 0 30205 49 14 2 chr15 51694924 51699241 -49681280 + L1PA8A LINE L1 1397 5766 -365 4526 12 2 0 chr15 51699341 51699859 -49680662 + L1PA2 LINE L1 5634 6152 -3 1812 224 63 73 chr15 51699862 51700773 -49679748 + L1ME1 LINE L1 1621 2521 -3875 2288 223 43 21 chr15 51700917 51701326 -49679195 + L1ME1 LINE L1 2480 2913 -3302 1378 220 10 20 chr15 51701326 51701630 -49678891 + AluJo SINE Alu 1 301 -11 2288 223 43 21 chr15 51701630 51701948 -49678573 + L1ME1 LINE L1 2913 3223 -2992 * 2862 192 27 95 chr15 51701943 51702881 -49677640 + L1MA9 LINE L1 5396 6269 -43 22 0 0 0 chr15 51702888 51702910 -49677611 + AT_rich Low_complexity Low_complexity 1 22 0 1106 251 64 6 chr15 51702919 51703389 -49677132 + L1ME1 LINE L1 3210 3706 -2509 366 98 0 0 chr15 51703402 51703463 -49677058 - L1PA16 LINE L1 -9 6157 6097 295 98 0 0 chr15 51703464 51703505 -49677016 - L1PA16 LINE L1 -107 6059 6019 3012 229 105 40 chr15 51703611 51704319 -49676202 + L1ME1 LINE L1 4355 5016 -1219 1622 195 3 3 chr15 51704319 51704617 -49675904 + AluJo SINE Alu 1 298 -14 3012 229 105 40 chr15 51704617 51705627 -49674894 + L1ME1 LINE L1 5016 6191 -44 1353 203 37 69 chr15 51706354 51706729 -49673792 + L1MDa LINE L1 19 381 -6159 9624 177 20 43 chr15 51706753 51709484 -49671037 + L1PB1 LINE L1 2703 5495 -656 5137 36 2 2 chr15 51709484 51710097 -49670424 + L1PA3 LINE L1 5540 6152 -3 9624 177 20 43 chr15 51710097 51710530 -49669991 + L1PB1 LINE L1 5495 5795 -356 183 80 0 0 chr15 51710530 51710555 -49669966 + (TA)n Simple_repeat Simple_repeat 1 25 0 9624 177 20 43 chr15 51710555 51710904 -49669617 + L1PB1 LINE L1 5795 6151 0 1308 253 107 24 chr15 51710914 51711528 -49668993 + L1MDa LINE L1 393 1121 -5419 * 4253 171 47 23 chr15 51711506 51712775 -49667746 + L1MB2 LINE L1 5269 6563 -2 1342 148 22 30 chr15 51712852 51712927 -49667594 - L1MC/D LINE L1 -681 5561 5487 1360 84 59 5 chr15 51712927 51713129 -49667392 - L1PA8 LINE L1 -3 6169 5957 1342 148 22 30 chr15 51713129 51713323 -49667198 - L1MC/D LINE L1 -755 5487 5294 4304 97 29 5 chr15 51714552 51715180 -49665341 + THE1B-int LTR MaLR 938 1580 0 2825 85 0 0 chr15 51715180 51715544 -49664977 + THE1B LTR MaLR 1 364 0 206 279 98 16 chr15 51715702 51715763 -49664758 - L2 LINE L2 -86 3186 3121 187 359 109 16 chr15 51715932 51716124 -49664397 - L2 LINE L2 -21 3292 3083 774 110 37 22 chr15 51716456 51716592 -49663929 - L1PA7 LINE L1 0 6154 6017 3975 47 0 0 chr15 51716632 51717117 -49663404 - L1PA4 LINE L1 -3 6152 5668 623 148 0 16 chr15 51717117 51717239 -49663282 - L1PA8 LINE L1 -106 6066 5947 312 283 108 18 chr15 51717391 51717557 -49662964 - L1MC4a LINE L1 -1894 5914 5734 1128 279 73 22 chr15 51717560 51717969 -49662552 + MLT1J2 LTR MaLR 7 436 -14 620 178 126 13 chr15 51718012 51718281 -49662240 + MER92B LTR ERV1 7 347 -289 288 260 0 14 chr15 51718819 51718892 -49661629 + L2 LINE L2 3241 3312 -1 213 182 26 156 chr15 51719371 51719448 -49661073 + MIR3 SINE MIR 131 197 -11 786 283 85 20 chr15 51719545 51719945 -49660576 + LTR16A LTR ERVL 25 450 0 225 295 26 0 chr15 51719981 51720059 -49660462 + MARNA DNA Mariner 455 534 -52 473 265 33 105 chr15 51720861 51721076 -49659445 + LTR16A1 LTR ERVL 155 301 -156 2958 3 0 0 chr15 51721076 51721394 -49659127 - AluYb8 SINE Alu 0 318 1 473 265 33 105 chr15 51721394 51721540 -49658981 + LTR16A1 LTR ERVL 301 456 -1 268 288 113 12 chr15 51721664 51721744 -49658777 - L2 LINE L2 -48 3224 3137 21 57 0 0 chr15 51721994 51722029 -49658492 + AT_rich Low_complexity Low_complexity 1 35 0 184 172 35 0 chr15 51722038 51722096 -49658425 + (TA)n Simple_repeat Simple_repeat 2 61 0 397 265 39 6 chr15 51722138 51722319 -49658202 + L1MC4a LINE L1 6073 6259 -1549 1904 249 109 73 chr15 51722569 51723858 -49656663 + L1MC4 LINE L1 6705 8040 -2 233 333 108 0 chr15 51724420 51724522 -49655999 - MIR3 SINE MIR -32 176 64 337 217 0 0 chr15 51724563 51724623 -49655898 + MIR SINE MIR 64 123 -139 737 212 39 13 chr15 51725233 51725464 -49655057 + L1ME1 LINE L1 5724 5960 -206 245 54 27 0 chr15 51725490 51725527 -49654994 + MSTB1 LTR MaLR 395 432 0 273 197 127 0 chr15 51725536 51725607 -49654914 - L1ME1 LINE L1 -133 6033 5954 2030 144 45 0 chr15 51725607 51725960 -49654561 - MSTB1 LTR MaLR -63 369 1 416 242 17 8 chr15 51725962 51726082 -49654439 + L1ME1 LINE L1 6040 6160 -6 8678 35 1 0 chr15 51726106 51727354 -49653167 - L1PA5 LINE L1 -629 5525 4276 5113 39 0 2 chr15 51727354 51727959 -49652562 + L1PA5 LINE L1 5536 6143 -11 2177 114 7 0 chr15 51728502 51728799 -49651722 + AluSx SINE Alu 1 299 -13 288 53 0 0 chr15 51728906 51728944 -49651577 + (GA)n Simple_repeat Simple_repeat 2 39 0 310 297 167 16 chr15 51728997 51729070 -49651451 - L1M4 LINE L1 -2411 3735 3674 1218 160 0 9 chr15 51729070 51729289 -49651232 + L1PB4 LINE L1 5940 6156 0 310 297 167 16 chr15 51729289 51729407 -49651114 - L1M4 LINE L1 -2472 3674 3515 31 44 0 0 chr15 51729520 51729565 -49650956 + AT_rich Low_complexity Low_complexity 1 45 0 719 300 71 62 chr15 51731512 51731992 -49648529 + L2 LINE L2 2829 3312 -1 280 279 29 10 chr15 51732080 51732184 -49648337 + GA-rich Low_complexity Low_complexity 2 107 0 765 273 88 4 chr15 51732832 51733070 -49647451 + MIR SINE MIR 1 258 -4 2362 71 122 6 chr15 51735547 51735883 -49644638 - THE1C LTR MaLR 0 375 1 2193 157 86 0 chr15 51736098 51736492 -49644029 + MSTA LTR MaLR 1 428 0 3821 176 8 3 chr15 51736492 51737221 -49643300 + MSTA-int LTR MaLR 1 733 -918 225 171 0 0 chr15 51737221 51737256 -49643265 + Alu SINE Alu 248 282 -20 213 65 0 0 chr15 51737259 51737290 -49643231 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 210 118 0 0 chr15 51738792 51738826 -49641695 + (T)n Simple_repeat Simple_repeat 1 34 0 274 280 67 0 chr15 51739868 51739943 -49640578 - L2 LINE L2 -36 3236 3157 266 329 114 26 chr15 51740209 51740437 -49640084 - L2 LINE L2 -1275 2039 1792 435 202 211 0 chr15 51740756 51740870 -49639651 + MER104 DNA Tc2 38 175 -5 2292 80 7 13 chr15 51740997 51741298 -49639223 + AluSx SINE Alu 1 299 -13 489 296 34 34 chr15 51741318 51741438 -49639083 + MER5A DNA MER1_type 10 132 -57 1561 191 3 26 chr15 51741438 51741741 -49638780 + AluJo SINE Alu 1 296 -16 489 296 34 34 chr15 51741741 51741799 -49638722 + MER5A DNA MER1_type 131 188 -1 368 273 34 0 chr15 51743035 51743123 -49637398 - LTR16C LTR ERVL -14 477 387 1349 224 84 6 chr15 51743195 51743530 -49636991 + LTR16A LTR ERVL 89 449 -1 964 259 148 14 chr15 51743531 51743821 -49636700 - LTR16C LTR ERVL -111 380 52 289 256 136 24 chr15 51744021 51744146 -49636375 - MIR SINE MIR -4 258 120 4447 86 22 5 chr15 51744240 51744822 -49635699 - L1PA11 LINE L1 -1 6173 5582 606 88 0 0 chr15 51744823 51744903 -49635618 - L1PA11 LINE L1 -644 5524 5445 1483 163 23 47 chr15 51746198 51746499 -49634022 - AluJo SINE Alu -18 294 1 192 152 0 0 chr15 51747223 51747256 -49633265 + A-rich Low_complexity Low_complexity 1 33 0 5228 18 0 0 chr15 51747343 51747903 -49632618 + L1PA3 LINE L1 5593 6152 -3 2095 122 0 29 chr15 51748887 51749199 -49631322 - AluSx SINE Alu -9 303 1 290 25 0 25 chr15 51749221 51749238 -49631283 + (CA)n Simple_repeat Simple_repeat 1 55 0 290 25 0 25 chr15 51749238 51749278 -49631243 + (CA)n Simple_repeat Simple_repeat 2 40 0 1984 127 3 17 chr15 51749723 51750023 -49630498 + AluJo SINE Alu 1 296 -16 325 353 104 30 chr15 51750242 51750636 -49629885 + L2 LINE L2 1698 2120 -1194 565 300 89 4 chr15 51750756 51751003 -49629518 + LTR16C LTR ERVL 224 491 0 494 354 49 30 chr15 51751007 51751479 -49629042 + L2 LINE L2 2143 2623 -691 683 216 8 93 chr15 51751483 51751639 -49628882 + MIR SINE MIR 6 137 -125 2346 84 10 16 chr15 51751639 51751950 -49628571 + AluY SINE Alu 1 309 -2 683 216 8 93 chr15 51751950 51752029 -49628492 + MIR SINE MIR 137 221 -41 6345 118 5 2 chr15 51752030 51752529 -49627992 + L1PA13 LINE L1 4776 5272 -891 2006 132 7 3 chr15 51752529 51752816 -49627705 + AluSx SINE Alu 1 288 -24 6345 118 5 2 chr15 51752816 51753714 -49626807 + L1PA13 LINE L1 5272 6163 0 270 194 42 28 chr15 51753953 51754025 -49626496 - MER116 DNA Mariner -7 73 1 1745 173 3 13 chr15 51755320 51755620 -49624901 - AluJo SINE Alu -15 297 1 318 169 292 11 chr15 51755840 51755929 -49624592 - MER81 DNA DNA 0 114 1 1371 164 14 5 chr15 51756900 51757114 -49623407 + MER20 DNA MER1_type 4 219 0 1988 66 8 0 chr15 51757337 51757578 -49622943 + L1PA7 LINE L1 5912 6154 0 378 74 0 0 chr15 51759481 51759535 -49620986 + (TA)n Simple_repeat Simple_repeat 1 54 0 225 258 237 41 chr15 51759706 51759803 -49620718 + MIR SINE MIR 31 146 -62 568 254 12 17 chr15 51759805 51759978 -49620543 + MER117 DNA MER1_type 4 175 -22 358 234 21 76 chr15 51760040 51760074 -49620447 - L1M4c LINE L1 -4791 2168 2134 213 65 0 0 chr15 51760074 51760105 -49620416 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 1849 122 42 0 chr15 51760111 51760374 -49620147 - AluSx SINE Alu -38 274 1 358 234 21 76 chr15 51760374 51760477 -49620044 - L1M4c LINE L1 -4830 2129 2032 2963 127 97 25 chr15 51760477 51760609 -49619912 - L1MA9 LINE L1 0 6312 6191 246 62 0 0 chr15 51760609 51760641 -49619880 + (TG)n Simple_repeat Simple_repeat 1 32 0 2963 127 97 25 chr15 51760641 51761067 -49619454 - L1MA9 LINE L1 -121 6191 5714 2679 214 62 56 chr15 51761092 51762040 -49618481 + MER21B LTR ERV1 9 862 -1 1517 145 17 0 chr15 51762048 51762289 -49618232 - L1MA9 LINE L1 -586 5726 5482 712 218 34 0 chr15 51762278 51762457 -49618064 - L1M4c LINE L1 -4896 2063 1879 * 6296 204 101 53 chr15 51762564 51764344 -49616177 - L1M4c LINE L1 -4985 1870 11 687 97 10 19 chr15 51765105 51765208 -49615313 + L1PA7 LINE L1 3 104 -6357 * 31657 102 12 26 chr15 51765196 51767567 -49612954 + L1PA7 LINE L1 427 2829 -3640 2745 22 0 10 chr15 51767567 51767879 -49612642 - AluYb8 SINE Alu -9 309 1 31657 102 12 26 chr15 51767879 51770871 -49609650 + L1PA7 LINE L1 2829 5795 -674 2247 112 3 0 chr15 51770871 51771165 -49609356 + AluSg SINE Alu 1 295 -15 31657 102 12 26 chr15 51771165 51771829 -49608692 + L1PA7 LINE L1 5795 6467 -2 2032 191 8 14 chr15 51772055 51772422 -49608099 + MLT1A1 LTR MaLR 1 365 0 240 333 69 0 chr15 51772948 51773020 -49607501 - L2 LINE L2 -43 3229 3153 42037 61 5 2 chr15 51773050 51779179 -49601342 + L1PA5 LINE L1 11 6154 0 180 152 0 0 chr15 51779226 51779259 -49601262 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 2405 183 38 32 chr15 51780268 51780770 -49599751 + MLT1D LTR MaLR 1 505 0 203 207 118 96 chr15 51781448 51781583 -49598938 - MIR SINE MIR -60 202 65 486 88 0 0 chr15 51782187 51782255 -49598266 + (CATATA)n Simple_repeat Simple_repeat 4 71 0 888 130 37 74 chr15 51782255 51782394 -49598127 + MER20 DNA MER1_type 64 198 -21 1777 163 7 17 chr15 51782394 51782694 -49597827 + AluJb SINE Alu 1 297 -15 888 130 37 74 chr15 51782694 51782716 -49597805 + MER20 DNA MER1_type 198 219 0 728 235 59 110 chr15 51782846 51782997 -49597524 - MIR SINE MIR -1 261 129 2306 128 0 0 chr15 51782997 51783310 -49597211 + AluSq SINE Alu 1 313 0 728 235 59 110 chr15 51783310 51783430 -49597091 - MIR SINE MIR -133 129 4 267 258 91 76 chr15 51783746 51783772 -49596749 + MLT1J LTR MaLR 378 402 -109 615 229 34 50 chr15 51783772 51783951 -49596570 - MER69A DNA AcHobo -1 176 1 267 258 91 76 chr15 51783951 51784056 -49596465 + MLT1J LTR MaLR 402 511 0 362 156 0 16 chr15 51784595 51784659 -49595862 + HAL1 LINE L1 1598 1660 -847 6150 124 9 9 chr15 51785472 51785755 -49594766 + L1PA15 LINE L1 4374 4656 -1509 2109 122 3 3 chr15 51785755 51786043 -49594478 + AluSx SINE Alu 1 288 -24 6150 124 9 9 chr15 51786043 51787563 -49592958 + L1PA15 LINE L1 4655 6165 0 458 269 131 7 chr15 51787623 51787768 -49592753 + MIR3 SINE MIR 36 198 -10 9028 167 31 35 chr15 51788346 51790345 -49590176 + L1MA7 LINE L1 3313 5320 -971 2373 71 10 7 chr15 51790345 51790655 -49589866 - AluY SINE Alu 0 311 1 9028 167 31 35 chr15 51790655 51790903 -49589618 + L1MA7 LINE L1 5316 5564 -723 1525 142 61 45 chr15 51790903 51791233 -49589288 + L1MA7 LINE L1 5946 6280 -11 4360 43 2 2 chr15 51792062 51792599 -49587922 + L1PA4 LINE L1 5617 6153 -2 385 308 8 22 chr15 51793239 51793428 -49587093 + MIR SINE MIR 24 206 -56 266 152 22 0 chr15 51795129 51795175 -49585346 - L2 LINE L2 0 3313 3267 182 206 29 0 chr15 51795147 51795181 -49585340 - MIR SINE MIR -13 249 215 * 288 330 0 18 chr15 51795360 51795469 -49585052 - MIR SINE MIR -125 137 31 1987 103 80 20 chr15 51795887 51796237 -49584284 - THE1C LTR MaLR -2 373 3 350 281 165 6 chr15 51796272 51796436 -49584085 + MLT1K LTR MaLR 171 360 -228 351 214 34 43 chr15 51796496 51796613 -49583908 + MLT1K LTR MaLR 466 581 -7 375 224 132 17 chr15 51796627 51796801 -49583720 - Charlie7 DNA MER1_type -1 2611 2418 310 230 30 20 chr15 51796773 51796873 -49583648 - Charlie7 DNA MER1_type -2510 102 2 * 21 0 0 0 chr15 51797029 51797050 -49583471 + AT_rich Low_complexity Low_complexity 1 21 0 361 279 139 24 chr15 51798042 51798207 -49582314 - MIR SINE MIR -58 204 21 546 167 107 130 chr15 51798487 51798565 -49581956 - MER33 DNA MER1_type -2289 296 218 1857 120 10 17 chr15 51798565 51798856 -49581665 - AluJb SINE Alu -23 289 1 546 167 107 130 chr15 51798856 51799076 -49581445 - MER33 DNA MER1_type -2367 218 5 231 267 50 25 chr15 51799375 51799495 -49581026 + L1ME LINE L1 5762 5884 -286 1925 112 0 32 chr15 51799810 51800095 -49580426 - AluSx SINE Alu 0 312 37 342 181 6 17 chr15 51800561 51800648 -49579873 + L1MC4 LINE L1 7909 8040 0 2420 81 3 3 chr15 51800919 51801226 -49579295 - AluSp SINE Alu -6 307 1 1084 213 0 14 chr15 51802957 51803178 -49577343 - MER20 DNA MER1_type 0 219 2 273 229 119 0 chr15 51803324 51803433 -49577088 - L1ME LINE L1 -382 5739 5618 440 238 95 24 chr15 51803526 51803652 -49576869 + L2 LINE L2 3179 3313 0 1971 138 10 14 chr15 51803845 51804141 -49576380 + AluSq SINE Alu 6 300 -13 1041 238 147 25 chr15 51804524 51804877 -49575644 - MSTD LTR MaLR 0 396 1 748 272 6 0 chr15 51805502 51805671 -49574850 - MER5B DNA MER1_type 0 178 9 673 172 43 0 chr15 51805924 51806040 -49574481 + AluJb SINE Alu 171 291 -21 182 269 0 0 chr15 51806335 51806387 -49574134 + L2 LINE L2 3262 3313 0 239 222 0 122 chr15 51806736 51806826 -49573695 - L2 LINE L2 -12 3260 3182 * 346 342 118 0 chr15 51806815 51806976 -49573545 + MIR SINE MIR 35 214 -48 195 253 114 25 chr15 51806993 51807072 -49573449 - MIR SINE MIR -71 191 106 1584 189 4 4 chr15 51807138 51807413 -49573108 - AluJo SINE Alu -31 281 7 223 270 130 30 chr15 51808387 51808487 -49572034 - L2 LINE L2 0 3272 3163 511 226 58 32 chr15 51809451 51809606 -49570915 - MIR SINE MIR -2 260 102 212 194 143 82 chr15 51809727 51809825 -49570696 + MIR SINE MIR 77 180 -82 1078 172 5 54 chr15 51810060 51810281 -49570240 + AluJb SINE Alu 85 294 -18 589 214 166 70 chr15 51812174 51812403 -49568118 - MIR SINE MIR -6 256 6 268 179 317 57 chr15 51812701 51812824 -49567697 + MER5A DNA MER1_type 34 188 -1 249 307 93 0 chr15 51813630 51813705 -49566816 + L2 LINE L2 3231 3312 -1 3729 192 96 24 chr15 51814003 51815109 -49565412 + L1MC4 LINE L1 6828 7995 0 981 184 60 0 chr15 51815786 51816036 -49564485 - MER33 DNA MER1_type 0 324 60 2534 212 81 23 chr15 51816097 51816846 -49563675 + L1MC4 LINE L1 7250 8042 0 462 250 20 0 chr15 51816847 51816947 -49563574 + MER5A DNA MER1_type 8 109 -80 2721 126 14 5 chr15 51817273 51817717 -49562804 + L1PB3 LINE L1 5707 6154 0 26 50 0 0 chr15 51817726 51817766 -49562755 + AT_rich Low_complexity Low_complexity 1 40 0 215 224 0 92 chr15 51818338 51818414 -49562107 + L2 LINE L2 3161 3229 -43 2223 104 0 7 chr15 51818724 51819032 -49561489 + AluSx SINE Alu 1 306 -6 1086 77 36 6 chr15 51819367 51819535 -49560986 - MER30 DNA MER1_type -57 173 1 2278 108 0 7 chr15 51819781 51820088 -49560433 + AluSx SINE Alu 2 306 -6 242 29 29 0 chr15 51820205 51820240 -49560281 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 269 182 15 15 chr15 51821201 51821267 -49559254 - MER116 DNA Mariner 0 80 15 224 305 143 9 chr15 51824024 51824129 -49556392 - L2 LINE L2 -4 3268 3150 315 0 0 0 chr15 51824618 51824653 -49555868 + (CA)n Simple_repeat Simple_repeat 2 36 0 1083 162 20 25 chr15 51824663 51824860 -49555661 + AluJb SINE Alu 108 303 -9 243 299 104 52 chr15 51825699 51825833 -49554688 - MER5A DNA MER1_type -48 141 1 562 244 50 44 chr15 51827456 51827636 -49552885 + L2 LINE L2 3118 3298 -15 307 226 53 83 chr15 51827779 51827912 -49552609 - L1ME LINE L1 -486 5618 5490 364 277 129 7 chr15 51827928 51828083 -49552438 - L1ME LINE L1 -2337 5454 5281 1883 113 42 42 chr15 51828562 51828915 -49551606 - THE1B LTR MaLR -11 353 1 877 295 60 64 chr15 51829557 51830364 -49550157 - L1ME LINE L1 -4862 1257 455 2347 91 0 7 chr15 51830382 51830691 -49549830 + AluSg1 SINE Alu 1 307 -2 397 259 71 94 chr15 51830763 51831060 -49549461 - L1ME LINE L1 -5825 294 5 2048 132 7 0 chr15 51831186 51831481 -49549040 - AluSx SINE Alu -15 297 1 998 230 72 122 chr15 51831649 51832175 -49548346 - L2 LINE L2 0 3313 2814 2118 70 92 0 chr15 51832352 51832625 -49547896 - AluSp SINE Alu -15 298 1 2428 52 3 26 chr15 51833230 51833539 -49546982 - AluY SINE Alu -9 302 1 600 130 0 46 chr15 51833744 51833852 -49546669 - L1PB4 LINE L1 -1 6155 6053 1934 131 25 0 chr15 51835751 51836034 -49544487 + AluSx SINE Alu 1 290 -22 1730 139 46 4 chr15 51836178 51836459 -49544062 - AluJb SINE Alu -19 293 1 658 299 55 10 chr15 51836516 51837123 -49543398 + L1ME LINE L1 5014 5655 -496 774 254 34 34 chr15 51837353 51837489 -49543032 + MER3 DNA MER1_type 1 139 -70 1752 148 95 0 chr15 51837489 51837773 -49542748 - AluSx SINE Alu -1 311 1 774 254 34 34 chr15 51837773 51837845 -49542676 + MER3 DNA MER1_type 138 209 0 225 256 151 0 chr15 51837896 51837982 -49542539 + L1M2 LINE L1 5700 5798 -502 1151 288 69 33 chr15 51838150 51838730 -49541791 - MLT1L LTR MaLR -14 601 1 2489 187 36 4 chr15 51838827 51839382 -49541139 - L1MA4 LINE L1 0 6300 5728 287 244 0 11 chr15 51839596 51839686 -49540835 + (TA)n Simple_repeat Simple_repeat 2 90 0 235 264 0 22 chr15 51839698 51839789 -49540732 + L1MC4 LINE L1 6615 6703 -1339 495 293 0 0 chr15 51839796 51839970 -49540551 + (TA)n Simple_repeat Simple_repeat 1 174 0 228 247 59 0 chr15 51839973 51840058 -49540463 + L1MC4 LINE L1 6614 6703 -1339 183 239 0 0 chr15 51840068 51840114 -49540407 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 5828 144 22 38 chr15 51840118 51841552 -49538969 - L1MA4 LINE L1 -653 5647 4240 242 304 0 0 chr15 51841588 51841644 -49538877 - MIR SINE MIR -142 120 65 180 0 0 0 chr15 51841844 51841864 -49538657 + (T)n Simple_repeat Simple_repeat 1 20 0 491 262 131 30 chr15 51841975 51842212 -49538309 - MIR SINE MIR 0 262 2 2348 67 7 3 chr15 51842418 51842715 -49537806 - AluY SINE Alu -13 298 1 3657 126 2 11 chr15 51843349 51843881 -49536640 + MER1A DNA MER1_type 1 527 0 2365 64 0 0 chr15 51844041 51844348 -49536173 + AluY SINE Alu 1 307 0 2666 14 0 0 chr15 51845257 51845552 -49534969 + AluY SINE Alu 1 295 -16 2221 79 55 0 chr15 51845566 51845858 -49534663 + AluSx SINE Alu 1 308 -4 663 229 122 5 chr15 51845866 51846071 -49534450 + MIR SINE MIR 31 259 -3 2006 124 13 7 chr15 51846138 51846436 -49534085 + AluSx SINE Alu 1 300 -12 25 31 0 0 chr15 51846514 51846546 -49533975 + AT_rich Low_complexity Low_complexity 1 32 0 2145 124 10 16 chr15 51847266 51847580 -49532941 + AluSx SINE Alu 1 312 0 23 0 0 0 chr15 51847807 51847830 -49532691 + AT_rich Low_complexity Low_complexity 1 23 0 589 217 171 0 chr15 51848842 51848994 -49531527 + MER5A DNA MER1_type 9 186 -3 290 24 48 0 chr15 51849613 51849655 -49530866 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2254 86 0 10 chr15 51849657 51849947 -49530574 - AluSq SINE Alu -26 287 1 1047 194 103 15 chr15 51850239 51850568 -49529953 + MLT2F LTR ERVL 302 659 -4 256 298 24 36 chr15 51850574 51850658 -49529863 - MER5B DNA MER1_type -73 105 23 225 0 0 0 chr15 51851428 51851453 -49529068 + (CTG)n Simple_repeat Simple_repeat 2 26 0 2177 120 0 22 chr15 51851664 51851980 -49528541 + AluSg SINE Alu 1 309 -1 183 156 0 0 chr15 51852726 51852758 -49527763 + (CA)n Simple_repeat Simple_repeat 1 32 0 211 351 14 0 chr15 51853475 51853549 -49526972 + L2 LINE L2 2878 2952 -320 851 209 45 6 chr15 51853684 51853859 -49526662 + MIR SINE MIR 17 198 -64 860 249 16 0 chr15 51853859 51854044 -49526477 + MER5A DNA MER1_type 1 188 -1 300 70 0 0 chr15 51854952 51854995 -49525526 + (TG)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr15 51855002 51855024 -49525497 + AT_rich Low_complexity Low_complexity 1 22 0 2078 94 19 16 chr15 51855030 51855337 -49525184 + AluSq SINE Alu 1 308 -5 204 310 35 53 chr15 51856038 51856151 -49524370 + MIR SINE MIR 79 189 -73 305 331 113 0 chr15 51856724 51856857 -49523664 + MIR SINE MIR 102 249 -13 1946 125 42 0 chr15 51857836 51858124 -49522397 + AluSp SINE Alu 1 300 -13 586 213 29 66 chr15 51858125 51858369 -49522152 + L1MC5 LINE L1 7701 7935 -26 21 82 0 0 chr15 51859104 51859153 -49521368 + AT_rich Low_complexity Low_complexity 1 49 0 2759 150 21 6 chr15 51859283 51859762 -49520759 - L1PA16 LINE L1 -30 6136 5651 4407 210 38 38 chr15 51859818 51861023 -49519498 + L1M4 LINE L1 16 1220 -5322 387 290 83 16 chr15 51861034 51861227 -49519294 + L1M4 LINE L1 1898 2103 -4543 2144 134 0 10 chr15 51861282 51861589 -49518932 + AluSx SINE Alu 1 304 -8 285 261 75 35 chr15 51861630 51861856 -49518665 + L1M4 LINE L1 2289 2523 -4123 * 1745 176 94 2 chr15 51861854 51862279 -49518242 + L1MB7 LINE L1 5718 6181 -3 21 0 0 0 chr15 51862678 51862699 -49517822 + AT_rich Low_complexity Low_complexity 1 21 0 2285 102 0 0 chr15 51863625 51863919 -49516602 + AluSp SINE Alu 18 311 -2 3153 62 0 62 chr15 51864144 51864614 -49515907 + L1PB1 LINE L1 5711 6151 0 1905 113 7 0 chr15 51865157 51865448 -49515073 - L1MA4A LINE L1 -7 6296 6004 417 275 129 34 chr15 51866847 51867048 -49513473 + MIR SINE MIR 38 256 -6 22 0 0 0 chr15 51867849 51867871 -49512650 + AT_rich Low_complexity Low_complexity 1 22 0 380 322 153 0 chr15 51869063 51869181 -49511340 + MIR SINE MIR 11 146 -116 298 165 58 126 chr15 51869188 51869291 -49511230 + HsTC2 DNA Tc2 4 99 -1799 376 295 25 8 chr15 51869383 51869505 -49511016 + MIR SINE MIR 139 262 0 22 0 0 0 chr15 51869603 51869625 -49510896 + AT_rich Low_complexity Low_complexity 1 22 0 1255 234 26 4 chr15 51869950 51870039 -49510482 + AluJo SINE Alu 20 106 -206 507 60 0 0 chr15 51870039 51870106 -49510415 + (TA)n Simple_repeat Simple_repeat 2 68 0 1255 234 26 4 chr15 51870106 51870281 -49510240 + AluJo SINE Alu 106 290 -22 22 0 0 0 chr15 51870281 51870303 -49510218 + AT_rich Low_complexity Low_complexity 1 22 0 230 53 184 0 chr15 51870303 51870341 -49510180 + L1PA11 LINE L1 6128 6172 -2 22 0 0 0 chr15 51870617 51870639 -49509882 + AT_rich Low_complexity Low_complexity 1 22 0 591 314 54 0 chr15 51870825 51871029 -49509492 + MIR SINE MIR 46 260 -2 413 309 81 0 chr15 51871240 51871389 -49509132 - MIR3 SINE MIR -17 191 31 1781 112 109 4 chr15 51871854 51872121 -49508400 + AluSx SINE Alu 1 295 -17 288 225 70 42 chr15 51872176 51872247 -49508274 - L2 LINE L2 -1 3312 3240 1971 116 0 52 chr15 51872500 51872833 -49507688 + AluSx SINE Alu 1 312 0 730 173 0 81 chr15 51872862 51873035 -49507486 - AluJo SINE Alu -90 222 64 1346 135 160 8 chr15 51874309 51874553 -49505968 + AluSx SINE Alu 1 281 -31 262 105 18 18 chr15 51874556 51874613 -49505908 + (TA)n Simple_repeat Simple_repeat 1 57 0 1063 113 25 0 chr15 51876419 51876578 -49503943 - AluY SINE Alu -12 299 137 1661 184 0 20 chr15 51877765 51878059 -49502462 - AluJb SINE Alu -22 290 3 2061 131 0 16 chr15 51878428 51878742 -49501779 - AluSx SINE Alu -1 311 3 694 111 0 9 chr15 51880694 51880802 -49499719 + L1PB3 LINE L1 6004 6110 -44 2038 129 11 3 chr15 51880802 51881089 -49499432 + AluSx SINE Alu 1 289 -23 2339 93 3 0 chr15 51881333 51881635 -49498886 + AluSg SINE Alu 1 303 -7 2260 106 3 0 chr15 51881646 51881947 -49498574 + AluSx SINE Alu 1 302 -10 38 39 0 0 chr15 51882948 51883000 -49497521 + AT_rich Low_complexity Low_complexity 1 52 0 187 300 55 55 chr15 51884135 51884245 -49496276 - L2 LINE L2 -3 3310 3201 242 292 154 31 chr15 51884395 51884525 -49495996 + MIR SINE MIR 65 210 -52 1520 224 3 0 chr15 51884616 51884911 -49495610 + AluJo SINE Alu 2 297 -15 355 239 123 23 chr15 51885216 51885346 -49495175 + MIR3 SINE MIR 66 208 0 1915 131 0 0 chr15 51886193 51886461 -49494060 + AluSq SINE Alu 1 268 -45 652 96 0 11 chr15 51886461 51886555 -49493966 + AluSg/x SINE Alu 193 285 -25 530 225 44 33 chr15 51887155 51887337 -49493184 + AluY SINE Alu 119 302 -9 1735 184 7 3 chr15 51887940 51888222 -49492299 + AluJo SINE Alu 1 283 -29 33 90 0 0 chr15 51888506 51888595 -49491926 + AT_rich Low_complexity Low_complexity 1 89 0 621 194 30 37 chr15 51888871 51889005 -49491516 + FLAM_A SINE Alu 1 133 0 1822 146 3 7 chr15 51889265 51889552 -49490969 - AluSx SINE Alu -26 286 1 500 222 131 50 chr15 51890603 51890801 -49489720 - Charlie8 DNA MER1_type -2143 274 61 811 203 69 43 chr15 51890835 51891067 -49489454 + MIR SINE MIR 14 251 -11 22 35 0 0 chr15 51891203 51891232 -49489289 + AT_rich Low_complexity Low_complexity 1 29 0 1342 148 108 68 chr15 51891687 51892011 -49488510 - MER44D DNA MER2_type -1 608 2 467 136 262 0 chr15 51892323 51892426 -49488095 + FLAM_A SINE Alu 1 130 -12 237 65 0 0 chr15 51892844 51892875 -49487646 + (T)n Simple_repeat Simple_repeat 1 31 0 187 547 0 0 chr15 51892896 51892949 -49487572 + G-rich Low_complexity Low_complexity 1 53 0 344 266 21 11 chr15 51894067 51894161 -49486360 - MIR SINE MIR -94 114 20 887 151 0 0 chr15 51894199 51894325 -49486196 + FLAM_C SINE Alu 1 126 -17 1318 160 53 63 chr15 51894351 51894669 -49485852 + MER33 DNA MER1_type 1 315 -9 1878 116 56 0 chr15 51894751 51895019 -49485502 - AluSg SINE Alu -17 293 11 511 311 149 0 chr15 51895398 51895633 -49484888 - L3 LINE CR1 -420 1157 888 2165 116 7 0 chr15 51895904 51896214 -49484307 + AluSx SINE Alu 1 312 0 2077 114 0 7 chr15 51896493 51896774 -49483747 + AluSc SINE Alu 1 279 -30 2208 98 3 31 chr15 51896774 51897091 -49483430 + AluSx SINE Alu 2 309 -3 205 121 0 69 chr15 51897099 51897157 -49483364 + (TTATA)n Simple_repeat Simple_repeat 4 57 0 692 224 109 11 chr15 51897188 51897371 -49483150 + MIR SINE MIR 34 234 -28 1949 69 120 4 chr15 51897443 51897718 -49482803 + AluY SINE Alu 1 307 -4 484 147 0 0 chr15 51897766 51897834 -49482687 + AluJ/FLAM SINE Alu 2 69 -243 518 208 195 32 chr15 51897836 51897990 -49482531 + AluJo/FRAM SINE Alu 130 308 -4 204 211 19 19 chr15 51897990 51898042 -49482479 + (TA)n Simple_repeat Simple_repeat 1 52 0 281 149 35 11 chr15 51898064 51898151 -49482370 + (TA)n Simple_repeat Simple_repeat 2 90 0 250 86 0 0 chr15 51898951 51898986 -49481535 + MADE1 DNA Mariner 1 35 -45 23 0 0 0 chr15 51899312 51899335 -49481186 + AT_rich Low_complexity Low_complexity 1 23 0 1997 102 57 21 chr15 51899544 51899827 -49480694 + AluSg SINE Alu 1 293 -17 356 653 0 0 chr15 51900854 51900998 -49479523 + G-rich Low_complexity Low_complexity 1 144 0 2306 103 0 0 chr15 51901431 51901732 -49478789 + AluSg SINE Alu 1 301 -9 2664 57 3 20 chr15 51902436 51902787 -49477734 - L1PA8 LINE L1 -1 6171 5827 2038 121 10 23 chr15 51902787 51903092 -49477429 - AluSc SINE Alu -8 301 1 9340 75 19 1 chr15 51903092 51904703 -49475818 - L1P3 LINE L1 -482 5690 4052 2070 130 0 0 chr15 51904861 51905025 -49475496 - AluSx SINE Alu -11 301 138 414 0 0 0 chr15 51905025 51905071 -49475450 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1923 102 0 0 chr15 51905071 51905317 -49475204 - AluY SINE Alu -30 281 36 2070 130 0 0 chr15 51905317 51905451 -49475070 - AluSx SINE Alu -172 140 2 1117 226 62 31 chr15 51905617 51905909 -49474612 - AluJo SINE Alu 0 302 2 23 0 0 0 chr15 51905938 51905961 -49474560 + AT_rich Low_complexity Low_complexity 1 23 0 401 290 100 35 chr15 51906004 51906204 -49474317 - MLT1I LTR MaLR -114 295 83 1397 199 8 0 chr15 51906415 51906666 -49473855 + L1MB7 LINE L1 5423 5675 -509 3965 50 50 0 chr15 51906667 51907167 -49473354 + LTR17 LTR ERV1 256 780 0 259 191 0 0 chr15 51907167 51907209 -49473312 + HERV17 LTR ERV1 2 43 -8583 * 57059 43 5 1 chr15 51907197 51913834 -49466687 + HERV17 LTR ERV1 1953 8621 -5 2723 58 0 0 chr15 51913836 51914162 -49466359 + LTR17 LTR ERV1 1 326 -454 1694 183 56 3 chr15 51914205 51914561 -49465960 + L1MB7 LINE L1 5665 6039 -145 8447 25 7 228 chr15 51914562 51916114 -49464407 - SVA Other Other -1 1385 177 1503 124 10 0 chr15 51916153 51916362 -49464159 - AluSg/x SINE Alu -14 298 88 2065 134 7 3 chr15 51916402 51916700 -49463821 + AluSx SINE Alu 3 301 -11 851 137 22 0 chr15 51916702 51916841 -49463680 + L1MB7 LINE L1 6035 6176 -8 457 95 68 0 chr15 51916856 51916930 -49463591 + L1MB7 LINE L1 6105 6183 -1 819 142 17 0 chr15 51917045 51917165 -49463356 + AluSg/x SINE Alu 91 212 -100 810 314 37 37 chr15 51917188 51917592 -49462929 - ERVL LTR ERVL -3652 2112 1709 2289 105 3 0 chr15 51917654 51917948 -49462573 - AluSp SINE Alu -18 295 1 1164 216 63 92 chr15 51918093 51918226 -49462295 - L1MC4 LINE L1 -136 7906 7771 2537 78 0 0 chr15 51918226 51918533 -49461988 + AluY SINE Alu 1 307 -4 1164 216 63 92 chr15 51918533 51918734 -49461787 - L1MC4 LINE L1 -271 7771 7566 2234 110 3 0 chr15 51918734 51919034 -49461487 - AluSx SINE Alu -11 301 1 8732 61 3 4 chr15 51919035 51920107 -49460414 + MER11C LTR ERVK 1 1071 0 1164 216 63 92 chr15 51920107 51920122 -49460399 - L1MC4 LINE L1 -476 7566 7552 2361 92 0 10 chr15 51920122 51920425 -49460096 - AluY SINE Alu -11 300 1 1164 216 63 92 chr15 51920425 51920547 -49459974 - L1MC4 LINE L1 -490 7552 7445 261 179 107 0 chr15 51920544 51920600 -49459921 - L1MC4 LINE L1 -972 7070 7009 * 345 132 19 0 chr15 51920600 51920653 -49459868 - MER45C DNA AcHobo 0 953 900 * 499 348 54 5 chr15 51920648 51920872 -49459649 - MER45C DNA AcHobo -325 628 394 24 32 0 0 chr15 51921352 51921383 -49459138 + AT_rich Low_complexity Low_complexity 1 31 0 345 186 29 0 chr15 51921719 51921789 -49458732 - L1MC4a LINE L1 -930 6878 6807 2067 111 29 26 chr15 51921814 51922121 -49458400 - AluSg SINE Alu -2 308 1 2199 112 3 0 chr15 51922152 51922446 -49458075 + AluSg SINE Alu 1 295 -15 4185 182 63 55 chr15 51922469 51923732 -49456789 - L1MB5 LINE L1 -6 6168 4917 1986 162 0 0 chr15 51923732 51924040 -49456481 - AluJb SINE Alu -4 308 1 4185 182 63 55 chr15 51924040 51924422 -49456099 - L1MB5 LINE L1 -1257 4917 4497 2227 96 20 3 chr15 51924422 51924724 -49455797 - AluSq SINE Alu -6 307 1 4185 182 63 55 chr15 51924724 51925011 -49455510 - L1MB5 LINE L1 -1677 4497 4214 746 186 0 101 chr15 51925011 51925199 -49455322 - L1MC4a LINE L1 -1077 6731 6563 500 333 122 28 chr15 51925364 51925940 -49454581 + L2 LINE L2 2012 2641 -673 810 285 0 0 chr15 51925974 51926188 -49454333 + MIR SINE MIR 48 261 -1 2448 77 0 3 chr15 51926819 51927131 -49453390 - AluY SINE Alu 0 311 1 24 32 0 0 chr15 51928425 51928456 -49452065 + GC_rich Low_complexity Low_complexity 1 31 0 233 197 16 0 chr15 51929708 51929769 -49450752 + CT-rich Low_complexity Low_complexity 3 64 0 2481 178 22 31 chr15 51929790 51929821 -49450700 - L1M4 LINE L1 -984 5162 5132 2054 156 0 0 chr15 51929821 51930123 -49450398 - AluSx SINE Alu -10 302 1 2481 178 22 31 chr15 51930123 51930599 -49449922 - L1M4 LINE L1 -1014 5132 4658 2237 114 3 0 chr15 51930599 51930896 -49449625 - AluSp SINE Alu -15 298 1 2481 178 22 31 chr15 51930896 51930933 -49449588 - L1M4 LINE L1 -1488 4658 4622 1533 230 224 23 chr15 51930994 51931142 -49449379 + L2 LINE L2 2357 2474 -839 2390 85 3 0 chr15 51931142 51931447 -49449074 + AluSx SINE Alu 1 306 -6 1533 230 224 23 chr15 51931447 51932122 -49448399 + L2 LINE L2 2474 3312 -1 668 112 0 0 chr15 51932164 51932253 -49448268 - 5S rRNA rRNA -31 90 2 302 136 0 0 chr15 51932583 51932627 -49447894 - AluSq/x SINE Alu -172 131 88 637 200 118 6 chr15 51933169 51933339 -49447182 + MER53 DNA DNA 1 189 0 412 325 25 0 chr15 51933448 51933605 -49446916 - MIR3 SINE MIR 0 208 48 21 36 0 0 chr15 51934154 51934182 -49446339 + AT_rich Low_complexity Low_complexity 1 28 0 1114 153 40 54 chr15 51935042 51935264 -49445257 + MER20 DNA MER1_type 1 219 0 192 77 0 0 chr15 51935422 51935448 -49445073 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 309 303 170 12 chr15 51935943 51936108 -49444413 - MIR3 SINE MIR -3 205 15 190 304 82 64 chr15 51936460 51936631 -49443890 + L2 LINE L2 2698 2871 -443 280 74 0 56 chr15 51936631 51936685 -49443836 + (TTCCC)n Simple_repeat Simple_repeat 3 53 0 1578 153 0 4 chr15 51936703 51936931 -49443590 - AluSx SINE Alu -80 232 6 4894 52 2 0 chr15 51937248 51937838 -49442683 + L1PA6 LINE L1 5545 6135 -19 216 0 0 0 chr15 51937838 51937862 -49442659 + (TA)n Simple_repeat Simple_repeat 1 24 0 204 316 0 51 chr15 51937897 51938014 -49442507 - MER5B DNA MER1_type -67 111 1 237 277 84 0 chr15 51938038 51938121 -49442400 - MIR SINE MIR -76 132 43 889 148 59 0 chr15 51938288 51938457 -49442064 + MER5A DNA MER1_type 11 189 0 466 208 69 21 chr15 51938658 51938802 -49441719 - MIR SINE MIR -11 251 101 467 270 29 40 chr15 51938871 51939045 -49441476 - MER5A DNA MER1_type 0 189 18 208 193 18 70 chr15 51939505 51939562 -49440959 + MER5A DNA MER1_type 48 101 -88 2578 63 0 0 chr15 51939584 51939883 -49440638 + AluY SINE Alu 1 299 -12 303 28 0 0 chr15 51940256 51940292 -49440229 + (TA)n Simple_repeat Simple_repeat 1 36 0 450 214 56 0 chr15 51940302 51940428 -49440093 + L1MA10 LINE L1 3229 3361 -2785 2211 128 0 3 chr15 51940430 51940743 -49439778 + AluSx SINE Alu 1 312 0 3485 142 22 69 chr15 51940745 51940806 -49439715 + L1MA10 LINE L1 5141 5203 -1109 1934 159 7 0 chr15 51940806 51941108 -49439413 + AluSx SINE Alu 1 304 -8 3485 142 22 69 chr15 51941108 51941887 -49438634 + L1MA10 LINE L1 5203 5950 -362 918 192 6 0 chr15 51941888 51942044 -49438477 + FRAM SINE Alu 2 158 -18 1696 181 7 52 chr15 51942066 51942469 -49438052 + L1MA10 LINE L1 5943 6327 -7 379 325 76 12 chr15 51942546 51942795 -49437726 + HAL1 LINE L1 2194 2458 -49 618 130 0 0 chr15 51942823 51942915 -49437606 + AluS SINE Alu 1 92 -220 239 250 60 36 chr15 51943286 51943370 -49437151 - MER81 DNA DNA -6 108 23 330 279 81 0 chr15 51943370 51943481 -49437040 + MIR SINE MIR 99 218 -44 36 0 0 0 chr15 51943982 51944018 -49436503 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr15 51944333 51944366 -49436155 + AT_rich Low_complexity Low_complexity 1 33 0 1958 137 3 31 chr15 51944601 51944922 -49435599 + AluSx SINE Alu 1 312 0 374 254 62 23 chr15 51945896 51946073 -49434448 + L1M4 LINE L1 3865 4048 -2098 426 247 10 10 chr15 51946100 51946197 -49434324 + AluJ/FLAM SINE Alu 1 97 -215 1572 178 35 0 chr15 51946362 51946621 -49433900 - AluSx SINE Alu -44 268 1 398 264 156 32 chr15 51946644 51946809 -49433712 - L1M4 LINE L1 -867 5279 5136 1459 171 56 28 chr15 51946809 51947095 -49433426 - AluJo SINE Alu -18 294 1 398 264 156 32 chr15 51947095 51947400 -49433121 - L1M4 LINE L1 -1010 5136 4739 304 266 28 0 chr15 51947515 51947624 -49432897 - L1M4 LINE L1 -1548 4598 4487 5651 118 30 24 chr15 51947647 51948617 -49431904 + L1MC1 LINE L1 5345 6320 -13 2021 132 10 13 chr15 51948621 51948932 -49431589 + AluSg SINE Alu 1 310 0 2192 117 7 0 chr15 51949130 51949437 -49431084 + AluSp SINE Alu 1 309 -4 1715 199 31 6 chr15 51950211 51950567 -49429954 + MLT1A1 LTR MaLR 1 365 0 252 335 145 20 chr15 51950570 51950770 -49429751 - L2 LINE L2 -707 2607 2383 682 228 176 5 chr15 51950792 51950985 -49429536 - MIR SINE MIR -36 226 1 198 309 115 30 chr15 51951013 51951178 -49429343 - L2 LINE L2 -984 2330 2152 407 226 29 10 chr15 51952537 51952639 -49427882 + MIR3 SINE MIR 96 199 -9 1901 144 9 103 chr15 51952966 51953395 -49427126 + MLT1B LTR MaLR 2 390 0 322 306 33 8 chr15 51953450 51953571 -49426950 - L1MC4 LINE L1 -185 7857 7734 2026 111 21 0 chr15 51953634 51953913 -49426608 + AluSx SINE Alu 1 285 -27 216 0 0 0 chr15 51953918 51953942 -49426579 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 435 327 164 21 chr15 51954924 51955392 -49425129 + L2 LINE L2 2253 2787 -527 922 189 44 0 chr15 51955475 51955655 -49424866 + MER5A DNA MER1_type 2 189 0 291 287 98 98 chr15 51956280 51956357 -49424164 - MER5A DNA MER1_type -6 183 107 1925 55 0 4 chr15 51956357 51956594 -49423927 + AluY SINE Alu 72 307 -4 291 287 98 98 chr15 51956594 51956690 -49423831 - MER5A DNA MER1_type -81 108 10 982 238 64 39 chr15 51956793 51957154 -49423367 + HAL1 LINE L1 1 370 -2137 3656 223 30 47 chr15 51957165 51957294 -49423227 + L1M1 LINE L1 3466 3596 -3969 2392 96 0 6 chr15 51957294 51957608 -49422913 + AluSx SINE Alu 1 312 0 3656 223 30 47 chr15 51957608 51958665 -49421856 + L1M1 LINE L1 3596 4656 -2909 1650 115 0 0 chr15 51958665 51958882 -49421639 + AluSq SINE Alu 1 217 -96 396 284 37 0 chr15 51959035 51959169 -49421352 - LTR33 LTR ERVL -373 148 10 292 365 38 13 chr15 51959372 51959531 -49420990 - L2 LINE L2 -531 2783 2621 2136 116 10 0 chr15 51960174 51960466 -49420055 + AluSq SINE Alu 1 295 -18 666 184 16 0 chr15 51960466 51960586 -49419935 - AluJo/FLAM SINE Alu -190 122 1 271 272 0 25 chr15 51960604 51960685 -49419836 + Charlie8 DNA MER1_type 125 203 -2214 2306 90 10 0 chr15 51960715 51961015 -49419506 - AluSg SINE Alu -7 303 1 2320 113 0 7 chr15 51961106 51961415 -49419106 - AluSq SINE Alu -6 307 1 223 270 14 14 chr15 51961978 51962052 -49418469 - MIR SINE MIR -111 151 78 1008 97 0 8 chr15 51962056 51962190 -49418331 + AluSq/x SINE Alu 1 133 -180 1984 121 7 4 chr15 51962193 51962501 -49418020 + AluSx SINE Alu 1 309 0 207 363 71 18 chr15 51963068 51963236 -49417285 - MIR SINE MIR -52 210 34 2005 150 3 52 chr15 51963350 51963469 -49417052 + MER7A DNA MER2_type 1 124 -2914 2116 120 3 0 chr15 51963469 51963761 -49416760 - AluSx SINE Alu -19 293 1 2005 150 3 52 chr15 51963761 51964007 -49416514 + MER7A DNA MER2_type 124 346 0 1562 261 94 24 chr15 51964129 51964639 -49415882 - L2 LINE L2 0 3313 2782 284 298 219 0 chr15 51964679 51964793 -49415728 - L2 LINE L2 0 3272 3134 1745 113 153 43 chr15 51964800 51964866 -49415655 - MER47A DNA MER2_type -1957 366 309 1481 169 83 24 chr15 51964866 51965156 -49415365 + AluJo SINE Alu 1 307 -5 1745 113 153 43 chr15 51965156 51965416 -49415105 - MER47A DNA MER2_type -2014 309 4 2089 136 0 7 chr15 51965448 51965742 -49414779 + AluSx SINE Alu 1 292 -20 1823 233 105 65 chr15 51965743 51966066 -49414455 + L1ME3A LINE L1 5254 5563 -607 1758 144 68 37 chr15 51966066 51966392 -49414129 + MER1B DNA MER1_type 1 336 -1 1823 233 105 65 chr15 51966392 51966928 -49413593 + L1ME3A LINE L1 5563 6147 -23 1424 216 70 99 chr15 51966928 51967106 -49413415 + MLT1F LTR MaLR 1 183 -359 1889 170 3 7 chr15 51967106 51967406 -49413115 + AluJo SINE Alu 1 299 -13 1424 216 70 99 chr15 51967406 51967773 -49412748 + MLT1F LTR MaLR 183 530 -12 24 32 0 0 chr15 51967786 51967817 -49412704 + AT_rich Low_complexity Low_complexity 1 31 0 2047 68 29 42 chr15 51968457 51968767 -49411754 + L1PB2 LINE L1 5844 6149 -2 2621 49 0 0 chr15 51968917 51969222 -49411299 + AluY SINE Alu 1 305 -6 1735 184 7 3 chr15 51969825 51970107 -49410414 + AluJo SINE Alu 1 283 -29 33 90 0 0 chr15 51970391 51970480 -49410041 + AT_rich Low_complexity Low_complexity 1 89 0 621 194 30 37 chr15 51970756 51970890 -49409631 + FLAM_A SINE Alu 1 133 0 2243 80 0 7 chr15 51971150 51971438 -49409083 - AluSx SINE Alu -26 286 1 1346 246 94 12 chr15 51972851 51973278 -49407243 - MLT1H LTR MaLR -4 545 84 233 296 70 0 chr15 51973399 51973470 -49407051 + MIR SINE MIR 76 151 -111 2152 110 20 0 chr15 51973636 51973935 -49406586 - AluSx SINE Alu -7 305 1 471 238 110 26 chr15 51973949 51974176 -49406345 - HAL1 LINE L1 -5 2502 2257 2105 119 0 7 chr15 51974225 51974520 -49406001 + AluSx SINE Alu 1 293 -19 24 0 0 0 chr15 51975109 51975133 -49405388 + AT_rich Low_complexity Low_complexity 1 24 0 2035 92 28 7 chr15 51975901 51976184 -49404337 + AluSx SINE Alu 1 289 -23 2157 102 7 0 chr15 51976729 51977024 -49403497 - AluSc SINE Alu -12 297 1 1971 127 96 35 chr15 51977137 51977532 -49402989 + MSTB1 LTR MaLR 1 419 -13 562 72 24 24 chr15 51977689 51977772 -49402749 - AluSx SINE Alu -16 294 212 1137 87 7 7 chr15 51977773 51977922 -49402599 - AluSx SINE Alu -164 149 1 1391 173 48 0 chr15 51977925 51978173 -49402348 - AluJo SINE Alu -7 305 46 186 138 0 0 chr15 51979065 51979094 -49401427 - L2 LINE L2 -18 3295 3267 2466 69 3 0 chr15 51979842 51980146 -49400375 - AluY SINE Alu -6 305 1 2491 66 0 3 chr15 51980329 51980633 -49399888 + AluY SINE Alu 1 303 -8 2376 83 3 3 chr15 51980688 51980988 -49399533 - AluSp SINE Alu -13 300 1 289 206 0 44 chr15 51981001 51981069 -49399452 + MIR3 SINE MIR 105 169 -39 1445 146 123 19 chr15 51981244 51981512 -49399009 + AluSg SINE Alu 1 296 -14 2152 125 0 7 chr15 51982347 51982644 -49397877 - AluSx SINE Alu -17 295 1 2182 78 24 17 chr15 51982769 51983062 -49397459 + AluSq SINE Alu 1 295 -18 210 279 153 42 chr15 51985848 51986038 -49394483 + L2 LINE L2 2276 2486 -828 2074 162 66 75 chr15 51986192 51986309 -49394212 + Tigger7 DNA MER2_type 1 118 -2369 2046 140 3 7 chr15 51986309 51986609 -49393912 + AluSx SINE Alu 1 299 -13 2074 162 66 75 chr15 51986609 51987022 -49393499 + Tigger7 DNA MER2_type 118 526 -1961 552 163 0 0 chr15 51987016 51987108 -49393413 + Tigger7 DNA MER2_type 2400 2491 0 * 989 162 39 0 chr15 51989912 51990066 -49390455 - AluSg/x SINE Alu -17 293 134 2465 82 0 0 chr15 51990165 51990470 -49390051 + AluSc SINE Alu 1 305 -4 1787 168 10 13 chr15 51991499 51991803 -49388718 + AluJo SINE Alu 1 303 -9 2273 109 0 3 chr15 51991805 51992118 -49388403 + AluSx SINE Alu 1 312 0 562 156 0 0 chr15 51992295 51992385 -49388136 + 5S rRNA rRNA 1 90 -31 1803 165 7 0 chr15 51992539 51992812 -49387709 - AluSx SINE Alu -2 310 36 207 0 0 0 chr15 51993304 51993327 -49387194 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2007 139 13 7 chr15 51993336 51993645 -49386876 + AluSx SINE Alu 1 311 -1 339 314 145 0 chr15 51993645 51993804 -49386717 + MIR SINE MIR 61 242 -20 24 96 0 0 chr15 51994054 51994127 -49386394 + AT_rich Low_complexity Low_complexity 1 73 0 1729 149 66 0 chr15 51994154 51994443 -49386078 - AluSx SINE Alu -4 308 1 1002 100 8 0 chr15 51994540 51994670 -49385851 + AluSq/x SINE Alu 1 131 -182 2311 82 3 3 chr15 51995219 51995512 -49385009 + AluSp SINE Alu 1 293 -20 301 105 0 0 chr15 51996771 51996809 -49383712 + Tigger2 DNA MER2_type 1 38 -2680 * 659 245 43 0 chr15 51996808 51996947 -49383574 - MER8 DNA MER2_type -93 146 2 180 342 112 6 chr15 51996987 51997148 -49383373 + L2 LINE L2 2864 3041 -231 2155 122 0 0 chr15 51997559 51997855 -49382666 + AluSx SINE Alu 1 296 -16 2416 72 7 0 chr15 51997984 51998277 -49382244 + AluSp SINE Alu 2 296 -17 21 0 0 0 chr15 51998842 51998863 -49381658 + AT_rich Low_complexity Low_complexity 1 21 0 606 143 0 0 chr15 51999238 51999322 -49381199 + AluSx SINE Alu 2 85 -227 2388 75 3 7 chr15 51999323 51999629 -49380892 + AluSg SINE Alu 1 305 -5 1535 121 0 9 chr15 51999627 51999850 -49380671 + AluSx SINE Alu 71 291 -19 * 304 262 173 24 chr15 52000318 52000486 -49380035 - MIR SINE MIR -64 198 6 2240 102 7 0 chr15 52001105 52001398 -49379123 + AluSx SINE Alu 1 295 -17 1455 142 24 109 chr15 52003361 52003691 -49376830 - AluYb8 SINE Alu -16 302 1 282 56 0 0 chr15 52003958 52003994 -49376527 - Alu SINE Alu -262 37 2 24 0 0 0 chr15 52004166 52004190 -49376331 + AT_rich Low_complexity Low_complexity 1 24 0 1839 156 17 23 chr15 52004415 52004716 -49375805 - AluJb SINE Alu -13 299 1 295 279 0 0 chr15 52005189 52005257 -49375264 + L2 LINE L2 3240 3307 -6 1268 266 11 43 chr15 52006287 52006655 -49373866 + MLT1A1 LTR MaLR 10 365 0 2123 121 24 0 chr15 52007337 52007627 -49372894 - AluSx SINE Alu -15 297 1 324 120 0 0 chr15 52007874 52007924 -49372597 + (TG)n Simple_repeat Simple_repeat 2 51 0 1711 173 3 20 chr15 52007970 52008265 -49372256 + AluJo SINE Alu 1 290 -22 738 180 16 0 chr15 52008282 52008404 -49372117 + FLAM_C SINE Alu 3 126 -17 2319 105 0 3 chr15 52008547 52008851 -49371670 + AluSq SINE Alu 1 303 -10 25 65 0 0 chr15 52008855 52008901 -49371620 + AT_rich Low_complexity Low_complexity 1 46 0 276 250 120 0 chr15 52008906 52009014 -49371507 + L1ME4a LINE L1 5982 6102 -19 2259 64 0 0 chr15 52009014 52009325 -49371196 - AluY SINE Alu 0 311 1 909 123 0 0 chr15 52009463 52009585 -49370936 + AluSg SINE Alu 1 122 -188 2376 68 3 0 chr15 52009586 52009880 -49370641 + AluY SINE Alu 1 295 -16 1871 104 39 46 chr15 52009883 52010190 -49370331 + AluSg SINE Alu 1 305 -5 237 258 67 34 chr15 52010202 52010291 -49370230 + Charlie4 DNA MER1_type 1869 1960 -1 16196 119 25 20 chr15 52010598 52011256 -49369265 - Tigger1 DNA MER2_type 0 2418 1765 2562 63 0 0 chr15 52011256 52011556 -49368965 - AluY SINE Alu -11 300 1 16196 119 25 20 chr15 52011556 52013125 -49367396 - Tigger1 DNA MER2_type -653 1765 176 1904 136 16 19 chr15 52013125 52013433 -49367088 + AluSq SINE Alu 1 307 -6 16196 119 25 20 chr15 52013433 52013610 -49366911 - Tigger1 DNA MER2_type -2242 176 1 2209 125 0 3 chr15 52013910 52014214 -49366307 - AluSx SINE Alu -9 303 1 196 259 56 19 chr15 52014787 52014841 -49365680 - L2 LINE L2 -16 3256 3201 515 92 0 0 chr15 52014856 52014921 -49365600 + Alu SINE Alu 2 66 -244 2361 65 3 13 chr15 52015361 52015669 -49364852 + AluY SINE Alu 1 305 -6 2252 68 16 16 chr15 52016287 52016594 -49363927 - AluSp SINE Alu -6 307 1 2258 79 3 44 chr15 52016619 52016934 -49363587 + AluSp SINE Alu 1 302 -11 439 232 66 114 chr15 52017231 52017371 -49363150 + MIR SINE MIR 52 197 -65 923 184 82 6 chr15 52017371 52017529 -49362992 + FAM SINE Alu 4 173 -2 2130 133 3 3 chr15 52017538 52017846 -49362675 + AluSg SINE Alu 1 308 -2 439 232 66 114 chr15 52017846 52017906 -49362615 + MIR SINE MIR 205 252 -10 2271 71 3 0 chr15 52018688 52018970 -49361551 - AluSg SINE Alu -26 284 2 504 82 0 118 chr15 52019371 52019456 -49361065 - AluSq/x SINE Alu -180 133 59 653 208 142 96 chr15 52019564 52019869 -49360652 + LTR37B LTR ERV1 12 344 -124 1528 171 27 27 chr15 52019869 52020168 -49360353 - AluJb SINE Alu -13 299 1 653 208 142 96 chr15 52020168 52020299 -49360222 + LTR37B LTR ERV1 344 468 0 941 196 0 22 chr15 52020461 52020640 -49359881 + FAM SINE Alu 1 175 0 617 170 14 109 chr15 52020650 52020797 -49359724 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr15 52020899 52020923 -49359598 + AT_rich Low_complexity Low_complexity 1 24 0 2146 104 0 26 chr15 52020963 52021270 -49359251 - AluSc SINE Alu -10 299 1 1820 157 14 7 chr15 52021274 52021555 -49358966 - AluJb SINE Alu -15 297 15 2129 109 7 3 chr15 52021575 52021869 -49358652 + AluSq SINE Alu 1 295 -18 1688 155 21 28 chr15 52021908 52022199 -49358322 + AluJo SINE Alu 1 289 -23 1445 193 33 17 chr15 52022376 52022458 -49358063 - AluJo SINE Alu -6 306 227 2885 77 41 0 chr15 52022458 52022820 -49357701 + MER51B LTR ERV1 1 377 0 1445 193 33 17 chr15 52022820 52023038 -49357483 - AluJo SINE Alu -85 227 1 3543 99 22 38 chr15 52023400 52023905 -49356616 + LOR1a LTR ERV1 1 497 0 2287 109 0 0 chr15 52024626 52024928 -49355593 + AluSg SINE Alu 1 302 -8 381 113 0 0 chr15 52025375 52025428 -49355093 - MER4E LTR ERV1 0 779 727 1492 263 120 63 chr15 52025436 52025675 -49354846 - L2 LINE L2 -221 3092 2868 2327 54 9 41 chr15 52025675 52025991 -49354530 + AluY SINE Alu 1 306 -5 1492 263 120 63 chr15 52025991 52026447 -49354074 - L2 LINE L2 -445 2868 2350 2159 119 10 10 chr15 52026447 52026757 -49353764 + AluSx SINE Alu 1 310 -2 1492 263 120 63 chr15 52026757 52026868 -49353653 - L2 LINE L2 -963 2350 2247 2377 83 0 0 chr15 52027341 52027631 -49352890 - AluSc SINE Alu -18 291 2 567 256 158 55 chr15 52027720 52027974 -49352547 - L2 LINE L2 0 3313 3034 1365 118 0 94 chr15 52028094 52028339 -49352182 + AluSx SINE Alu 59 280 -32 877 152 0 7 chr15 52028564 52028702 -49351819 + AluSq/x SINE Alu 1 137 -176 1561 112 130 32 chr15 52028704 52028981 -49351540 + AluSq SINE Alu 5 308 -5 2064 119 3 7 chr15 52028981 52029276 -49351245 + AluSg SINE Alu 1 294 -16 518 282 125 33 chr15 52029346 52029633 -49350888 - L1MC/D LINE L1 -615 5547 5269 388 260 97 25 chr15 52029756 52030074 -49350447 - L1MC/D LINE L1 -1038 5108 4751 2267 101 3 3 chr15 52030138 52030434 -49350087 + AluSx SINE Alu 2 297 -15 1909 145 0 17 chr15 52030985 52031282 -49349239 - AluJb SINE Alu -20 292 1 731 158 16 31 chr15 52033404 52033531 -49346990 + FLAM_C SINE Alu 1 125 -8 1201 123 6 0 chr15 52033543 52033714 -49346807 + AluY SINE Alu 1 172 -139 1258 125 44 138 chr15 52033716 52033832 -49346689 + AluSx SINE Alu 21 146 -166 2094 113 3 7 chr15 52033832 52034125 -49346396 + AluSp SINE Alu 1 292 -21 1258 125 44 138 chr15 52034125 52034305 -49346216 + AluSx SINE Alu 146 289 -23 746 223 61 0 chr15 52034318 52034466 -49346055 + FRAM SINE Alu 2 158 -8 2120 116 7 0 chr15 52034633 52034918 -49345603 - AluSx SINE Alu -25 287 1 2026 84 74 7 chr15 52035195 52035480 -49345041 - AluSx SINE Alu 0 312 9 22 65 0 0 chr15 52035833 52035864 -49344657 + GC_rich Low_complexity Low_complexity 1 31 0 1961 119 0 8 chr15 52036091 52036359 -49344162 - AluSx SINE Alu -46 266 1 2189 78 24 17 chr15 52036484 52036777 -49343744 + AluSq SINE Alu 1 295 -18 2139 69 7 52 chr15 52038418 52038723 -49341798 + AluSq SINE Alu 7 297 -16 2213 78 7 7 chr15 52040603 52040898 -49339623 + AluSq SINE Alu 1 295 -18 2205 98 3 44 chr15 52041834 52042151 -49338370 + AluSp SINE Alu 1 304 -9 209 259 19 19 chr15 52042469 52042523 -49337998 + MIR SINE MIR 20 73 -135 1982 154 0 0 chr15 52042667 52042960 -49337561 + AluSx SINE Alu 6 298 -14 2280 114 0 16 chr15 52042984 52043120 -49337401 + AluSx SINE Alu 1 138 -174 2343 96 3 0 chr15 52043120 52043421 -49337100 + AluSp SINE Alu 1 302 -11 2280 114 0 16 chr15 52043421 52043599 -49336922 + AluSx SINE Alu 138 310 -2 264 291 42 4 chr15 52043903 52044002 -49336519 - MIR3 SINE MIR -28 180 79 777 225 30 6 chr15 52044104 52044273 -49336248 + FAM SINE Alu 1 173 -2 1408 148 66 62 chr15 52044338 52044467 -49336054 + AluJo SINE Alu 11 138 -174 2492 68 0 0 chr15 52044467 52044763 -49335758 + AluY SINE Alu 1 296 -15 1408 148 66 62 chr15 52044763 52044890 -49335631 + AluJo SINE Alu 138 268 -44 2509 66 3 7 chr15 52044957 52045260 -49335261 + AluSp SINE Alu 1 302 -11 2414 68 0 0 chr15 52045385 52045678 -49334843 - AluY SINE Alu -18 293 1 1857 97 4 19 chr15 52045681 52045949 -49334572 - AluSq SINE Alu -6 307 44 2274 107 3 0 chr15 52046078 52046378 -49334143 + AluSx SINE Alu 1 301 -11 1665 178 78 84 chr15 52046607 52046667 -49333854 - LTR2B LTR ERV1 0 490 431 2282 80 42 0 chr15 52046667 52046956 -49333565 + AluSq SINE Alu 1 301 -12 1665 178 78 84 chr15 52046956 52047357 -49333164 - LTR2B LTR ERV1 -59 431 32 2125 92 0 18 chr15 52047598 52047880 -49332641 - AluSc SINE Alu -30 279 3 791 338 86 18 chr15 52048005 52048158 -49332363 + L2 LINE L2 2402 2543 -771 2138 112 0 7 chr15 52048158 52048475 -49332046 + AluSx SINE Alu 1 315 0 791 338 86 18 chr15 52048475 52048773 -49331748 + L2 LINE L2 2543 2885 -429 204 305 78 28 chr15 52048795 52048936 -49331585 + L2 LINE L2 2995 3142 -171 2091 78 32 6 chr15 52049216 52049588 -49330933 - LTR7 LTR ERV1 -18 432 1 2084 109 27 10 chr15 52050404 52050697 -49329824 - AluY SINE Alu -13 298 1 1487 180 42 21 chr15 52050709 52050882 -49329639 - AluJo SINE Alu -17 295 112 198 0 0 0 chr15 52050882 52050904 -49329617 + (TG)n Simple_repeat Simple_repeat 2 23 0 1487 180 42 21 chr15 52050904 52051019 -49329502 - AluJo SINE Alu -200 112 1 2148 108 0 19 chr15 52051200 52051507 -49329014 + AluSq SINE Alu 4 304 -9 2274 103 7 3 chr15 52052389 52052689 -49327832 + AluSx SINE Alu 1 301 -11 1788 166 0 10 chr15 52052702 52052998 -49327523 + AluSx SINE Alu 3 295 -17 2236 96 3 10 chr15 52053087 52053379 -49327142 + AluSp SINE Alu 1 290 -23 414 0 0 0 chr15 52053382 52053428 -49327093 + (TAA)n Simple_repeat Simple_repeat 3 48 0 272 272 18 9 chr15 52053518 52053632 -49326889 + (TA)n Simple_repeat Simple_repeat 1 115 0 209 314 172 30 chr15 52053786 52053955 -49326566 - L2 LINE L2 -995 2319 2127 467 268 145 68 chr15 52054063 52054249 -49326272 - L2 LINE L2 -1246 2068 1898 2133 113 7 0 chr15 52054249 52054560 -49325961 + AluSq SINE Alu 1 313 0 467 268 145 68 chr15 52054560 52054738 -49325783 - L2 LINE L2 -1416 1898 1675 1658 156 14 34 chr15 52054739 52055034 -49325487 - AluJb SINE Alu -15 297 9 279 154 0 0 chr15 52055034 52055073 -49325448 - Alu SINE Alu -258 45 7 869 139 0 8 chr15 52055211 52055340 -49325181 + AluSq/x SINE Alu 7 134 -179 2001 135 0 4 chr15 52055341 52055622 -49324899 + AluSx SINE Alu 1 280 -32 1333 226 3 49 chr15 52055632 52055959 -49324562 + MSTD LTR MaLR 85 396 0 1723 150 5 95 chr15 52056059 52056127 -49324394 + MER31A LTR ERV1 11 84 -401 2021 112 4 0 chr15 52056127 52056396 -49324125 - AluSg SINE Alu -40 270 1 2269 95 3 10 chr15 52056405 52056700 -49323821 - AluSp SINE Alu -20 293 1 1723 150 5 95 chr15 52056700 52057021 -49323500 + MER31A LTR ERV1 92 374 -111 337 130 0 19 chr15 52057343 52057397 -49323124 + LTR54B LTR ERV1 1 53 -445 4758 104 7 13 chr15 52057397 52058069 -49322452 - LTR8 LTR ERV1 0 691 24 1352 113 54 0 chr15 52058069 52058255 -49322266 - AluSq SINE Alu -117 196 1 660 183 63 27 chr15 52058257 52058469 -49322052 + LTR54B LTR ERV1 119 322 -176 4033 109 62 73 chr15 52058469 52058592 -49321929 - LTR8 LTR ERV1 0 691 568 2342 78 7 7 chr15 52058592 52058901 -49321620 - AluSg1 SINE Alu 0 309 1 4033 109 62 73 chr15 52058901 52059173 -49321348 - LTR8 LTR ERV1 -123 568 294 2373 74 3 0 chr15 52059173 52059469 -49321052 - AluSp SINE Alu -16 297 1 4033 109 62 73 chr15 52059469 52059496 -49321025 - LTR8 LTR ERV1 -397 294 268 2023 138 0 3 chr15 52059496 52059787 -49320734 - AluSq SINE Alu -22 291 2 4033 109 62 73 chr15 52059787 52060019 -49320502 - LTR8 LTR ERV1 -423 268 41 2444 84 0 3 chr15 52060019 52060329 -49320192 - AluY SINE Alu -2 309 1 4033 109 62 73 chr15 52060329 52060370 -49320151 - LTR8 LTR ERV1 -650 41 1 660 183 63 27 chr15 52060370 52060415 -49320106 + LTR54B LTR ERV1 322 410 -88 554 161 0 97 chr15 52061263 52061449 -49319072 - AluY SINE Alu -142 169 2 289 119 0 0 chr15 52061449 52061491 -49319030 - LTR8 LTR ERV1 -649 42 1 * 405 252 41 8 chr15 52061491 52061594 -49318927 + LTR54B LTR ERV1 369 475 -23 2232 112 0 0 chr15 52061595 52061890 -49318631 + AluSx SINE Alu 1 295 -17 2180 104 13 7 chr15 52061893 52062192 -49318329 + AluSq SINE Alu 1 301 -12 2358 80 3 13 chr15 52062192 52062491 -49318030 + AluY SINE Alu 1 296 -15 21 36 0 0 chr15 52062963 52062991 -49317530 + AT_rich Low_complexity Low_complexity 1 28 0 2365 89 0 0 chr15 52063577 52063868 -49316653 - AluY SINE Alu -20 291 1 228 35 0 0 chr15 52064016 52064045 -49316476 + (CA)n Simple_repeat Simple_repeat 1 29 0 220 149 27 14 chr15 52064408 52064482 -49316039 + (CCCA)n Simple_repeat Simple_repeat 1 75 0 294 220 12 40 chr15 52064528 52064701 -49315820 + A-rich Low_complexity Low_complexity 5 172 0 1369 149 0 5 chr15 52064713 52064921 -49315600 - AluY SINE Alu -104 207 1 324 102 0 0 chr15 52065068 52065117 -49315404 + (CA)n Simple_repeat Simple_repeat 2 50 0 2366 97 0 13 chr15 52065176 52065486 -49315035 - AluY SINE Alu -5 306 1 822 155 0 0 chr15 52065495 52065624 -49314897 - FLAM_C SINE Alu -3 130 2 2282 86 17 0 chr15 52065667 52065959 -49314562 - AluSp SINE Alu -16 297 1 2239 109 0 13 chr15 52066372 52066683 -49313838 + AluSx SINE Alu 1 307 -5 1960 140 4 0 chr15 52066730 52067008 -49313513 + AluSx SINE Alu 5 283 -29 2341 73 0 51 chr15 52067037 52067353 -49313168 + AluY SINE Alu 1 300 -11 628 78 84 0 chr15 52067407 52067759 -49312762 + (TA)n Simple_repeat Simple_repeat 1 381 0 946 28 18 0 chr15 52068260 52068369 -49312152 + BC200 scRNA scRNA 2 112 -88 436 344 58 69 chr15 52068931 52069396 -49311125 + MLT1K LTR MaLR 106 565 -23 2447 85 3 0 chr15 52069490 52069795 -49310726 - AluSp SINE Alu -7 306 1 1650 146 17 7 chr15 52069795 52070083 -49310438 - L1M3 LINE L1 -575 5608 5318 1887 144 13 13 chr15 52070087 52070392 -49310129 - AluSx SINE Alu -7 305 1 914 149 8 0 chr15 52070392 52070526 -49309995 - AluSq/x SINE Alu -177 135 1 2183 106 14 0 chr15 52070531 52070824 -49309697 - AluSx SINE Alu -15 297 1 210 224 86 0 chr15 52070915 52070973 -49309548 + L2 LINE L2 3210 3272 0 2079 185 83 25 chr15 52071190 52071660 -49308861 + MLT1D LTR MaLR 1 497 -8 2031 104 72 0 chr15 52071796 52072074 -49308447 + AluSq SINE Alu 1 298 -15 670 221 0 0 chr15 52072219 52072350 -49308171 + AluSp SINE Alu 14 144 -169 279 0 0 0 chr15 52072684 52072715 -49307806 + (CA)n Simple_repeat Simple_repeat 1 31 0 701 139 9 9 chr15 52072717 52072832 -49307689 - FRAM SINE Alu -11 165 51 3981 58 0 10 chr15 52072845 52073348 -49307173 + L1P LINE L1 3672 4169 -1977 208 0 0 133 chr15 52073352 52073435 -49307086 + (TCTCCC)n Simple_repeat Simple_repeat 4 75 0 1998 190 83 30 chr15 52074191 52074660 -49305861 + MLT1D LTR MaLR 4 497 -8 2007 108 72 0 chr15 52074796 52075075 -49305446 + AluSq SINE Alu 1 299 -14 2001 149 0 10 chr15 52075220 52075515 -49305006 + AluSx SINE Alu 14 305 -7 24 67 0 0 chr15 52075642 52075687 -49304834 + AT_rich Low_complexity Low_complexity 1 45 0 1785 144 0 34 chr15 52075826 52076117 -49304404 - AluJo SINE Alu -31 281 1 1365 171 91 69 chr15 52076390 52076752 -49303769 + MLT1A2 LTR MaLR 1 370 -4 2130 102 28 3 chr15 52076773 52077058 -49303463 - AluSg SINE Alu -18 292 1 2188 76 44 4 chr15 52077099 52077374 -49303147 - AluY SINE Alu -25 286 1 2176 122 0 3 chr15 52077394 52077688 -49302833 - AluSg SINE Alu -17 293 1 2260 100 7 0 chr15 52077786 52078077 -49302444 - AluSg SINE Alu -17 293 1 3359 26 0 0 chr15 52078121 52078506 -49302015 - L1PA5 LINE L1 0 6154 5770 2017 126 0 0 chr15 52078820 52079122 -49301399 - AluSx SINE Alu 0 306 5 10061 41 5 1 chr15 52080126 52081743 -49298778 - L1PA5 LINE L1 -371 5783 4164 6145 106 37 31 chr15 52081744 52084091 -49296430 - SVA Other Other -518 1386 1 249 151 57 0 chr15 52084092 52084145 -49296376 + G-rich Low_complexity Low_complexity 1 56 0 3981 58 0 10 chr15 52084146 52084649 -49295872 - L1P LINE L1 -1977 4169 3672 688 142 9 9 chr15 52084662 52084775 -49295746 + FRAM SINE Alu 51 163 -13 360 0 0 0 chr15 52084777 52084817 -49295704 + (TG)n Simple_repeat Simple_repeat 2 41 0 2237 97 0 3 chr15 52084845 52085133 -49295388 + AluY SINE Alu 1 287 -24 28 102 0 0 chr15 52085133 52085231 -49295290 + AT_rich Low_complexity Low_complexity 1 98 0 2324 102 7 0 chr15 52085242 52085546 -49294975 - AluSq SINE Alu -7 306 1 1186 177 8 20 chr15 52085637 52085886 -49294635 + AluSq SINE Alu 1 246 -67 580 77 0 0 chr15 52086277 52086355 -49294166 - AluS SINE Alu -235 78 1 2121 123 0 10 chr15 52086446 52086756 -49293765 + AluSq SINE Alu 1 307 -6 2132 141 0 0 chr15 52086762 52087066 -49293455 - AluSx SINE Alu -8 304 1 2147 123 7 0 chr15 52087883 52088184 -49292337 + AluSx SINE Alu 1 303 -9 280 302 77 12 chr15 52088444 52088613 -49291908 + HAL1b LINE L1 495 674 -674 1720 166 10 30 chr15 52088687 52088989 -49291532 - AluJo SINE Alu -16 296 1 2177 112 23 3 chr15 52089035 52089339 -49291182 + AluSq SINE Alu 3 312 -1 1665 81 5 9 chr15 52089982 52090192 -49290329 - AluSg SINE Alu -99 211 3 547 254 29 74 chr15 52090394 52090615 -49289906 + L1MEd LINE L1 700 899 -5220 2528 72 0 0 chr15 52090615 52090919 -49289602 - AluY SINE Alu -7 304 1 547 254 29 74 chr15 52090919 52091075 -49289446 + L1MEd LINE L1 899 1060 -5059 870 168 7 0 chr15 52091088 52091225 -49289296 + AluSx SINE Alu 1 138 -175 707 224 0 6 chr15 52091847 52092003 -49288518 + AluSx SINE Alu 140 294 -15 2111 139 0 0 chr15 52092058 52092353 -49288168 - AluSx SINE Alu -5 307 13 345 200 71 0 chr15 52092572 52092642 -49287879 + AluJ/FRAM SINE Alu 222 296 -6 24 0 0 0 chr15 52092648 52092672 -49287849 + AT_rich Low_complexity Low_complexity 1 24 0 234 0 0 0 chr15 52093075 52093101 -49287420 + (TA)n Simple_repeat Simple_repeat 2 27 0 2207 126 0 0 chr15 52093115 52093417 -49287104 - AluSx SINE Alu -8 304 3 307 303 197 14 chr15 52093470 52093688 -49286833 + MIR SINE MIR 5 262 0 2322 86 3 10 chr15 52093766 52094068 -49286453 - AluSp SINE Alu -12 301 2 17838 136 53 26 chr15 52094164 52096479 -49284042 + L1PB1 LINE L1 1 2254 -4608 2350 90 0 13 chr15 52096479 52096780 -49283741 + AluSg SINE Alu 1 297 -13 17838 136 53 26 chr15 52096780 52097379 -49283142 + L1PB1 LINE L1 2254 2836 -4026 2398 103 0 0 chr15 52097379 52097689 -49282832 - AluSg SINE Alu 0 310 1 17838 136 53 26 chr15 52097689 52097842 -49282679 + L1PB1 LINE L1 2836 2983 -3879 2196 78 4 7 chr15 52097842 52098167 -49282354 - AluSg SINE Alu 0 324 1 17838 136 53 26 chr15 52098167 52098455 -49282066 + L1PB1 LINE L1 2983 3262 -3600 2266 111 0 0 chr15 52098455 52098752 -49281769 - AluSx SINE Alu -15 297 1 2208 75 0 87 chr15 52098762 52099083 -49281438 - AluY SINE Alu -18 293 1 17838 136 53 26 chr15 52099083 52099737 -49280784 + L1PB1 LINE L1 3270 4123 -2739 4601 206 17 37 chr15 52099874 52100676 -49279845 + L1 LINE L1 3464 4236 -2626 1917 127 17 7 chr15 52100676 52100967 -49279554 - AluSx SINE Alu -18 294 1 4601 206 17 37 chr15 52100967 52101367 -49279154 + L1 LINE L1 4236 4642 -2220 781 236 5 19 chr15 52101913 52102129 -49278392 + AluY SINE Alu 75 287 -24 28 102 0 0 chr15 52102129 52102227 -49278294 + AT_rich Low_complexity Low_complexity 1 98 0 1980 139 13 0 chr15 52102238 52102539 -49277982 - AluSx SINE Alu -7 305 1 6082 201 17 45 chr15 52102541 52102939 -49277582 + L1PB1 LINE L1 4254 4661 -2206 1944 137 0 11 chr15 52102939 52103223 -49277298 + AluSx SINE Alu 1 281 -31 360 0 0 0 chr15 52103223 52103263 -49277258 + (CA)n Simple_repeat Simple_repeat 1 40 0 6082 201 17 45 chr15 52103263 52104775 -49275746 + L1PB1 LINE L1 4660 6212 -655 2246 96 44 0 chr15 52104775 52105068 -49275453 + AluSp SINE Alu 2 307 -6 6082 201 17 45 chr15 52105068 52105478 -49275043 + L1PB1 LINE L1 6212 6632 -235 351 44 0 0 chr15 52105478 52105523 -49274998 + (CA)n Simple_repeat Simple_repeat 2 46 0 6082 201 17 45 chr15 52105523 52105653 -49274868 + L1PB1 LINE L1 6632 6629 -238 2310 113 3 0 chr15 52105653 52105954 -49274567 - AluSp SINE Alu -11 302 1 6082 201 17 45 chr15 52105954 52106186 -49274335 + L1PB1 LINE L1 6628 6865 -2 1767 163 10 14 chr15 52106229 52106523 -49273998 + AluJb SINE Alu 1 293 -19 232 258 5 70 chr15 52107060 52107246 -49273275 + T-rich Low_complexity Low_complexity 4 177 0 519 245 63 31 chr15 52107411 52107570 -49272951 + MIR3 SINE MIR 8 171 -37 251 35 0 0 chr15 52107633 52107662 -49272859 + (CA)n Simple_repeat Simple_repeat 2 30 0 828 147 43 37 chr15 52108071 52108234 -49272287 + MER3 DNA MER1_type 6 122 -87 2179 100 10 3 chr15 52109141 52109450 -49271071 + AluSq SINE Alu 1 311 -2 2409 235 119 41 chr15 52109473 52109564 -49270957 - MER21B LTR ERV1 -11 852 770 2586 53 0 28 chr15 52109564 52109883 -49270638 - AluY SINE Alu -1 310 1 2409 235 119 41 chr15 52109883 52110148 -49270373 - MER21B LTR ERV1 -93 770 527 2471 74 0 0 chr15 52110148 52110445 -49270076 - AluSx SINE Alu -15 297 1 2409 235 119 41 chr15 52110445 52110638 -49269883 - MER21B LTR ERV1 -336 527 350 1913 133 10 23 chr15 52110638 52110938 -49269583 - AluJb SINE Alu -15 297 2 1849 147 0 29 chr15 52110941 52111253 -49269268 - AluJo SINE Alu -8 304 2 2409 235 119 41 chr15 52111253 52111481 -49269040 - MER21B LTR ERV1 -514 349 8 383 270 0 22 chr15 52111497 52111586 -49268935 - MER21B LTR ERV1 -776 87 1 2556 57 0 0 chr15 52111608 52111906 -49268615 - AluY SINE Alu -13 298 1 2226 108 0 0 chr15 52111947 52112233 -49268288 - AluSx SINE Alu -26 286 1 2068 131 10 0 chr15 52112431 52112729 -49267792 + AluSx SINE Alu 3 303 -9 2083 137 0 9 chr15 52112977 52113292 -49267229 + AluSx SINE Alu 1 312 0 318 219 14 0 chr15 52113306 52113379 -49267142 + L1MCa LINE L1 1995 2068 -4358 * 349 289 0 0 chr15 52113346 52113436 -49267085 + L1MC4 LINE L1 6894 6983 -1339 210 191 0 0 chr15 52113436 52113478 -49267043 + (TA)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr15 52113493 52113514 -49267007 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr15 52113721 52113749 -49266772 + AT_rich Low_complexity Low_complexity 1 28 0 2340 96 0 3 chr15 52113802 52114114 -49266407 + AluSx SINE Alu 1 311 -1 314 254 87 89 chr15 52114205 52114347 -49266174 + L1M4 LINE L1 4151 4292 -1854 2232 119 0 0 chr15 52114347 52114641 -49265880 + AluSg SINE Alu 1 294 -16 314 254 87 89 chr15 52114641 52114790 -49265731 + L1M4 LINE L1 4292 4440 -1706 2171 114 3 3 chr15 52114790 52115097 -49265424 + AluSx SINE Alu 1 307 -5 314 254 87 89 chr15 52115097 52115319 -49265202 + L1M4 LINE L1 4440 4664 -1482 411 302 53 18 chr15 52115332 52115557 -49264964 + L1M4b LINE L1 21 253 -6606 1468 172 4 4 chr15 52115576 52115808 -49264713 - MER46A DNA MER2_type -2 234 3 747 270 63 39 chr15 52116079 52116276 -49264245 + L1M4b LINE L1 2273 2481 -4657 1460 219 51 17 chr15 52116276 52116568 -49263953 + AluJo SINE Alu 1 302 0 747 270 63 39 chr15 52116568 52116655 -49263866 + L1M4b LINE L1 2481 2564 -4574 1847 140 57 86 chr15 52116673 52116982 -49263539 + L1MB3 LINE L1 5774 6069 -114 2405 88 0 3 chr15 52116982 52117288 -49263233 + AluSx SINE Alu 1 305 -7 1847 140 57 86 chr15 52117288 52117399 -49263122 + L1MB3 LINE L1 6069 6182 -1 314 242 95 56 chr15 52117466 52117697 -49262824 + L1M4b LINE L1 2586 2825 -4313 189 74 0 0 chr15 52117715 52117742 -49262779 + (TATG)n Simple_repeat Simple_repeat 1 27 0 248 176 0 0 chr15 52117745 52117796 -49262725 + LTR66 LTR ERVL 394 444 -166 238 303 15 0 chr15 52117809 52117875 -49262646 + L1MCa LINE L1 3 69 -6357 933 170 16 62 chr15 52117876 52118070 -49262451 + AluSq SINE Alu 1 185 -128 6604 57 124 59 chr15 52119342 52120437 -49260084 + MER11A LTR ERVK 1 1266 0 1525 279 37 37 chr15 52120437 52120931 -49259590 + MER51C-int LTR ERV1 5842 6334 -1482 2127 122 67 28 chr15 52120931 52121292 -49259229 + THE1C LTR MaLR 1 375 0 1525 279 37 37 chr15 52121292 52121822 -49258699 + MER51C-int LTR ERV1 6334 7816 0 1241 210 168 76 chr15 52121835 52122306 -49258215 + MER51C LTR ERV1 127 640 0 2969 178 28 72 chr15 52122310 52122487 -49258034 + L1MB7 LINE L1 5494 5677 -507 2014 126 0 7 chr15 52122487 52122796 -49257725 + AluSx SINE Alu 1 307 0 2969 178 28 72 chr15 52122796 52123179 -49257342 + L1MB7 LINE L1 5677 6021 -163 2107 125 0 0 chr15 52123179 52123487 -49257034 - AluSg SINE Alu 0 308 1 2969 178 28 72 chr15 52123487 52123633 -49256888 + L1MB7 LINE L1 6021 6172 -12 1897 135 57 3 chr15 52123636 52123918 -49256603 - AluSx SINE Alu -15 297 1 297 0 0 0 chr15 52123926 52123959 -49256562 + (T)n Simple_repeat Simple_repeat 1 33 0 1891 154 14 43 chr15 52124106 52124294 -49256227 + L1MB8 LINE L1 5416 5608 -575 2494 69 0 7 chr15 52124294 52124597 -49255924 + AluY SINE Alu 1 301 -10 1891 154 14 43 chr15 52124597 52124695 -49255826 + L1MB8 LINE L1 5608 5691 -492 3519 85 2 9 chr15 52124695 52125142 -49255379 - MLT2A1 LTR ERVL 0 444 1 1891 154 14 43 chr15 52125142 52125223 -49255298 + L1MB8 LINE L1 5691 5773 -410 2393 83 0 3 chr15 52125805 52126107 -49254414 + AluY SINE Alu 1 301 -10 201 39 0 0 chr15 52126263 52126289 -49254232 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 2208 125 0 3 chr15 52126289 52126584 -49253937 - AluSq SINE Alu -15 298 3 1196 148 45 20 chr15 52126681 52126883 -49253638 + AluJb SINE Alu 90 296 -16 256 264 107 25 chr15 52126914 52127073 -49253448 + L2 LINE L2 1569 1740 -1574 265 231 0 0 chr15 52127184 52127236 -49253285 + LTR30 LTR ERV1 1 52 -670 1675 95 182 224 chr15 52127241 52127879 -49252642 + LTR12 LTR ERV1 57 590 -124 373 243 85 31 chr15 52127935 52128076 -49252445 + MLT1H LTR MaLR 61 175 -234 183 80 0 0 chr15 52128201 52128226 -49252295 + (T)n Simple_repeat Simple_repeat 1 25 0 272 156 234 13 chr15 52128285 52128362 -49252159 + MLT1H LTR MaLR 296 389 -1 600 265 124 77 chr15 52128778 52128899 -49251622 + Tigger8 DNA MER2_type 15 129 -537 2249 112 0 3 chr15 52128899 52129204 -49251317 + AluY SINE Alu 1 304 -7 600 265 124 77 chr15 52129204 52129444 -49251077 + Tigger8 DNA MER2_type 129 393 -273 2165 129 0 3 chr15 52129484 52129786 -49250735 + AluSx SINE Alu 1 301 -11 2287 91 0 3 chr15 52129967 52130264 -49250257 - AluSg SINE Alu -14 296 1 1293 194 8 4 chr15 52130279 52130531 -49249990 + L1MB8 LINE L1 5920 6172 -6 2350 74 0 3 chr15 52130763 52131059 -49249462 + AluY SINE Alu 1 295 -16 210 261 45 23 chr15 52131550 52131638 -49248883 + GA-rich Low_complexity Low_complexity 4 93 0 332 132 69 7 chr15 52131723 52131867 -49248654 + (TATAA)n Simple_repeat Simple_repeat 5 157 0 41 203 0 0 chr15 52131903 52131972 -49248549 + AT_rich Low_complexity Low_complexity 1 69 0 269 214 0 0 chr15 52131972 52132028 -49248493 + T-rich Low_complexity Low_complexity 1 56 0 171 0 0 0 chr15 52132028 52132199 -49248322 + AT_rich Low_complexity Low_complexity 1 171 0 413 252 19 0 chr15 52132323 52132426 -49248095 + AluSg/x SINE Alu 191 295 -14 1176 181 186 45 chr15 52132564 52132733 -49247788 - Charlie4a DNA MER1_type -1453 508 364 2183 101 0 0 chr15 52132733 52133021 -49247500 - AluSc SINE Alu -19 290 3 1176 181 186 45 chr15 52133021 52133160 -49247361 - Charlie4a DNA MER1_type -1597 364 246 1728 156 150 9 chr15 52133160 52133480 -49247041 + MLT1A1 LTR MaLR 1 365 0 1176 181 186 45 chr15 52133480 52133574 -49246947 - Charlie4a DNA MER1_type -1715 246 48 1721 170 3 14 chr15 52133896 52134184 -49246337 - AluJo SINE Alu -18 294 10 2486 72 3 0 chr15 52134207 52134514 -49246007 - AluSp SINE Alu -4 309 2 2268 107 0 0 chr15 52134594 52134892 -49245629 - AluSx SINE Alu -8 304 7 1125 189 126 0 chr15 52134934 52135215 -49245306 + MER58 DNA MER1_type 1 2408 -12 239 255 66 85 chr15 52135288 52135394 -49245127 + MER5A DNA MER1_type 71 174 -15 1588 173 13 29 chr15 52135644 52135951 -49244570 + AluJo SINE Alu 3 304 -8 1792 153 0 27 chr15 52136131 52136432 -49244089 + AluSx SINE Alu 1 293 -19 223 204 20 0 chr15 52136442 52136491 -49244030 + MER5B DNA MER1_type 5 54 -124 1286 139 5 28 chr15 52136836 52137052 -49243469 + AluSx SINE Alu 8 218 -94 550 245 126 7 chr15 52137140 52137291 -49243230 - MER5B DNA MER1_type -4 174 6 512 275 140 14 chr15 52137281 52137488 -49243033 + MIR SINE MIR 16 248 -14 * 652 247 68 106 chr15 52137640 52138200 -49242321 + MER34 LTR ERV1 1 527 -15 1940 112 27 27 chr15 52138200 52138494 -49242027 + AluSx SINE Alu 1 294 -18 652 247 68 106 chr15 52138494 52138510 -49242011 + MER34 LTR ERV1 527 542 0 180 0 0 0 chr15 52139480 52139500 -49241021 + (A)n Simple_repeat Simple_repeat 1 20 0 817 61 0 0 chr15 52139510 52139609 -49240912 + AluS SINE Alu 1 99 -214 1688 128 12 0 chr15 52139748 52140005 -49240516 + MER101 LTR ERV1 215 474 0 254 301 172 18 chr15 52140208 52140371 -49240150 - MIR3 SINE MIR -6 202 15 2076 119 4 0 chr15 52141153 52141431 -49239090 + AluSp SINE Alu 1 279 -34 429 269 0 0 chr15 52141601 52141705 -49238816 - AluSc SINE Alu -106 203 100 262 233 12 76 chr15 52141710 52141882 -49238639 + A-rich Low_complexity Low_complexity 2 162 0 228 259 0 0 chr15 52141958 52142016 -49238505 + A-rich Low_complexity Low_complexity 1 58 0 209 266 19 45 chr15 52142061 52142215 -49238306 + A-rich Low_complexity Low_complexity 5 154 0 10262 89 4 1 chr15 52142359 52143762 -49236759 + L1PA6 LINE L1 3514 4920 -1226 7255 64 8 3 chr15 52143865 52144926 -49235595 + L1PA6 LINE L1 5087 6151 -3 843 250 42 38 chr15 52144920 52145184 -49235337 - MER90 LTR ERV1 -310 265 1 245 241 72 12 chr15 52145252 52145335 -49235186 + L1ME3 LINE L1 5570 5657 -513 249 62 0 0 chr15 52145335 52145367 -49235154 - MER5A DNA MER1_type -124 65 34 182 159 227 0 chr15 52145336 52145380 -49235141 + MER5A DNA MER1_type 136 189 0 * 804 186 86 95 chr15 52145388 52145609 -49234912 - MER20 DNA MER1_type 0 219 1 346 198 352 6 chr15 52145634 52145799 -49234722 + L1ME3 LINE L1 5674 5892 -272 2178 113 10 7 chr15 52145842 52146151 -49234370 - AluSq SINE Alu -3 310 1 2312 155 14 0 chr15 52146222 52146583 -49233938 - MER47A DNA MER2_type 0 366 1 1017 200 5 37 chr15 52146812 52147002 -49233519 + MER5A DNA MER1_type 5 188 -1 2449 72 0 0 chr15 52147255 52147559 -49232962 - AluY SINE Alu -7 304 1 2658 85 47 14 chr15 52147826 52148189 -49232332 - THE1C LTR MaLR 0 375 1 303 265 83 97 chr15 52148445 52148734 -49231787 - L1MC4 LINE L1 -1015 7027 6658 2199 118 0 7 chr15 52148941 52149238 -49231283 - AluSx SINE Alu -17 295 1 2067 175 95 39 chr15 52149615 52150079 -49230442 - LTR2B LTR ERV1 0 490 1 13553 90 5 9 chr15 52150079 52150606 -49229915 - Harlequin LTR ERV1 0 6896 6368 2526 80 0 0 chr15 52150606 52150917 -49229604 - AluY SINE Alu 0 311 1 13553 90 5 9 chr15 52150917 52152330 -49228191 - Harlequin LTR ERV1 -528 6368 4945 * 17972 163 4 11 chr15 52152326 52155197 -49225324 - HERVE LTR ERV1 -1806 6007 3156 625 247 0 14 chr15 52155258 52155404 -49225117 - MER115 DNA AcHobo -80 613 470 286 321 151 0 chr15 52155420 52155579 -49224942 - MER115 DNA AcHobo -389 304 122 822 176 50 60 chr15 52155790 52155972 -49224549 - FRAM SINE Alu -1 175 1 444 233 101 16 chr15 52155978 52156107 -49224414 + MIR SINE MIR 74 213 -49 768 203 0 22 chr15 52156175 52156313 -49224208 - FLAM_C SINE Alu -7 136 2 2560 157 47 0 chr15 52156443 52156850 -49223671 - MSTB LTR MaLR 0 426 1 1661 181 3 23 chr15 52157283 52157582 -49222939 + AluJo SINE Alu 1 293 -19 2536 63 0 3 chr15 52158340 52158643 -49221878 + AluY SINE Alu 1 302 -9 14630 223 31 49 chr15 52158703 52160194 -49220327 - L1PA15 LINE L1 -223 7380 5864 2329 120 48 31 chr15 52160194 52160552 -49219969 + THE1B LTR MaLR 1 364 0 14630 223 31 49 chr15 52160552 52161962 -49218559 - L1PA15 LINE L1 -1739 5864 4430 1085 92 0 0 chr15 52161962 52162104 -49218417 - AluY SINE Alu -6 305 164 14630 223 31 49 chr15 52162104 52162116 -49218405 - L1PA15 LINE L1 -3173 4430 4419 2033 91 0 11 chr15 52162116 52162381 -49218140 - AluSc SINE Alu -47 262 1 14630 223 31 49 chr15 52162381 52165189 -49215332 - L1PA15 LINE L1 -3184 4419 1607 428 282 0 55 chr15 52165239 52165441 -49215080 - L1PA15 LINE L1 -5770 1811 1621 1669 181 16 10 chr15 52165475 52165784 -49214737 + AluJo SINE Alu 1 311 -1 5096 132 3 3 chr15 52165936 52166685 -49213836 + L1PA15 LINE L1 5416 6164 -1 1752 147 9 61 chr15 52166790 52167116 -49213405 - AluSx SINE Alu -3 309 1 759 200 55 18 chr15 52167356 52167521 -49213000 - MER20 DNA MER1_type -20 199 29 742 35 0 0 chr15 52167804 52167889 -49212632 + THE1A LTR MaLR 271 355 0 1203 253 119 23 chr15 52167889 52168277 -49212244 - L1MC4 LINE L1 -404 7638 7214 2795 229 93 28 chr15 52168629 52168797 -49211724 - L1ME1 LINE L1 -5 6956 6800 2224 217 56 24 chr15 52168797 52169336 -49211185 - LTR38 LTR ERV1 0 556 1 2795 229 93 28 chr15 52169336 52169944 -49210577 - L1ME1 LINE L1 -161 6800 6130 1291 239 65 21 chr15 52169953 52170384 -49210137 - L1ME1 LINE L1 -873 6068 5619 452 242 57 18 chr15 52170415 52170568 -49209953 - L1ME1 LINE L1 -4466 2577 2323 1790 88 25 0 chr15 52170604 52170843 -49209678 - L1PB1 LINE L1 -3 6148 5904 387 174 29 0 chr15 52170843 52170912 -49209609 - L1ME1 LINE L1 -4670 2452 2382 501 231 0 0 chr15 52170914 52171022 -49209499 - L1ME1 LINE L1 -5232 1191 1084 1721 264 73 35 chr15 52171311 52171917 -49208604 - L1ME1 LINE L1 -5764 659 31 1755 97 9 0 chr15 52172017 52172244 -49208277 - AluSc SINE Alu -6 303 75 256 245 0 0 chr15 52172342 52172391 -49208130 + MLT1A1 LTR MaLR 317 365 0 27 0 0 0 chr15 52172391 52172418 -49208103 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr15 52172581 52172602 -49207919 + AT_rich Low_complexity Low_complexity 1 21 0 4323 195 53 11 chr15 52172625 52173714 -49206807 + L1PA13 LINE L1 1 1316 -5471 2503 87 0 0 chr15 52173759 52174070 -49206451 - AluSx SINE Alu -1 311 1 385 282 69 8 chr15 52174184 52174315 -49206206 + L2 LINE L2 3175 3313 0 2425 112 0 0 chr15 52174907 52175219 -49205302 + AluSx SINE Alu 1 312 0 394 218 214 20 chr15 52175221 52175242 -49205279 - L1M4 LINE L1 -2896 3250 3234 1654 164 34 20 chr15 52175242 52175535 -49204986 - AluJo SINE Alu -15 297 1 394 218 214 20 chr15 52175535 52175761 -49204760 - L1M4 LINE L1 -2912 3234 2955 932 145 0 93 chr15 52176239 52176432 -49204089 - AluSg/x SINE Alu -1 311 137 1088 126 0 78 chr15 52177012 52177203 -49203318 - AluSg/x SINE Alu 0 312 137 2129 95 7 0 chr15 52181341 52181614 -49198907 + AluSx SINE Alu 1 275 -37 259 23 45 23 chr15 52181619 52181663 -49198858 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 198 0 0 0 chr15 52181768 52181790 -49198731 + (TG)n Simple_repeat Simple_repeat 2 23 0 273 81 0 0 chr15 52182851 52182888 -49197633 - MER116 DNA Mariner -5 75 39 306 338 56 60 chr15 52183048 52183528 -49196993 - HSMAR1 DNA Mariner -208 1079 602 2106 131 0 0 chr15 52186718 52187009 -49193512 - AluSx SINE Alu -21 291 1 2299 98 0 13 chr15 52187115 52187420 -49193101 + AluSc SINE Alu 1 301 -8 647 252 161 70 chr15 52187927 52188343 -49192178 - L1MC4a LINE L1 -1779 6029 5576 859 215 143 22 chr15 52188465 52188870 -49191651 - L1ME4a LINE L1 -25 7901 6004 587 242 168 27 chr15 52188903 52189433 -49191088 + LTR50 LTR ERVL 1 771 -24 448 168 97 113 chr15 52189453 52189534 -49190987 - L1MC5 LINE L1 -542 7419 7338 2251 127 56 9 chr15 52189534 52189856 -49190665 - MER1B DNA MER1_type 0 337 1 448 168 97 113 chr15 52189856 52189959 -49190562 - L1MC5 LINE L1 -623 7338 7238 385 139 0 56 chr15 52189975 52190047 -49190474 - MLT1E3 LTR MaLR 0 624 557 1479 176 9 52 chr15 52190047 52190181 -49190340 + L1M4 LINE L1 3603 3741 -2405 1588 179 3 36 chr15 52190181 52190483 -49190038 + AluJo SINE Alu 1 292 -20 1479 176 9 52 chr15 52190483 52190695 -49189826 + L1M4 LINE L1 3741 3934 -2212 17235 121 19 73 chr15 52190715 52190739 -49189782 + L1PA4 LINE L1 1 25 -6445 2172 110 3 19 chr15 52190739 52191049 -49189472 + AluSq SINE Alu 1 305 -8 17235 121 19 73 chr15 52191049 52192065 -49188456 + L1PA4 LINE L1 25 1094 -5376 1998 102 6 51 chr15 52192065 52192378 -49188143 - AluSq SINE Alu -14 299 1 17235 121 19 73 chr15 52192378 52192854 -49187667 + L1PA4 LINE L1 1094 1594 -4876 2318 103 0 16 chr15 52192854 52193165 -49187356 + AluY SINE Alu 5 310 -1 17235 121 19 73 chr15 52193165 52194191 -49186330 + L1PA4 LINE L1 1594 2673 -3797 1461 13 0 0 chr15 52194191 52194347 -49186174 + L1PA4 LINE L1 6309 6464 -6 17235 121 19 73 chr15 52194347 52198330 -49182191 + L1PA4 LINE L1 2673 6464 -6 11026 113 23 15 chr15 52198322 52199347 -49181174 + L1PA10 LINE L1 3607 4622 -1546 * 2018 113 33 4 chr15 52199347 52199645 -49180876 + AluSg SINE Alu 1 306 0 11026 113 23 15 chr15 52199645 52199978 -49180543 + L1PA10 LINE L1 4622 4951 -1217 2018 150 49 25 chr15 52199978 52200344 -49180177 - THE1C LTR MaLR 0 375 1 11026 113 23 15 chr15 52200344 52201056 -49179465 + L1PA10 LINE L1 4951 5698 -470 2250 117 3 0 chr15 52201056 52201355 -49179166 + AluSx SINE Alu 1 300 -12 11026 113 23 15 chr15 52201355 52201681 -49178840 + L1PA10 LINE L1 5698 6020 -148 4041 146 38 98 chr15 52201680 52201977 -49178544 + L1MB7 LINE L1 5064 5377 -807 * 1061 72 0 66 chr15 52201977 52202030 -49178491 - L1PB1 LINE L1 -3 6148 6093 2066 112 52 0 chr15 52202030 52202316 -49178205 - AluSg SINE Alu -9 301 1 1061 72 0 66 chr15 52202316 52202414 -49178107 - L1PB1 LINE L1 -58 6093 6007 4041 146 38 98 chr15 52202414 52203150 -49177371 + L1MB7 LINE L1 5377 6073 -111 345 229 0 0 chr15 52203328 52203411 -49177110 + L1MB3 LINE L1 6099 6181 -2 1084 236 183 22 chr15 52203417 52203778 -49176743 - MLT1E2 LTR MaLR -50 576 158 43 81 0 0 chr15 52204180 52204279 -49176242 + GC_rich Low_complexity Low_complexity 1 99 0 337 280 162 50 chr15 52204479 52204818 -49175703 + L1M2 LINE L1 861 1237 -5612 463 219 57 0 chr15 52205238 52205343 -49175178 + MIR3 SINE MIR 81 191 -17 235 0 0 54 chr15 52205376 52205413 -49175108 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 514 205 55 31 chr15 52205785 52205912 -49174609 + L2 LINE L2 3184 3313 0 2650 41 0 19 chr15 52206009 52206326 -49174195 + AluY SINE Alu 1 311 0 1698 138 3 35 chr15 52206408 52206697 -49173824 + AluJo SINE Alu 1 280 -32 417 209 112 75 chr15 52206953 52207087 -49173434 + MER5B DNA MER1_type 21 159 -19 399 325 45 104 chr15 52207145 52207350 -49173171 - L2 LINE L2 -67 3205 2989 2301 95 7 7 chr15 52207350 52207654 -49172867 + AluSg1 SINE Alu 1 304 -5 1105 153 25 20 chr15 52207662 52207865 -49172656 + L1MB4 LINE L1 5970 6173 -7 399 325 45 104 chr15 52207865 52208170 -49172351 - L2 LINE L2 -290 2982 2718 434 153 0 0 chr15 52208309 52208368 -49172153 - AluS SINE Alu -251 60 2 2078 112 30 3 chr15 52208560 52208864 -49171657 + AluSx SINE Alu 1 312 0 672 269 31 40 chr15 52208973 52209200 -49171321 + MIR SINE MIR 1 225 -37 217 200 31 31 chr15 52209203 52209253 -49171268 + (TAA)n Simple_repeat Simple_repeat 3 56 -11 1781 144 0 25 chr15 52209253 52209566 -49170955 + AluSx SINE Alu 5 310 0 217 200 31 31 chr15 52209566 52209579 -49170942 + (TAA)n Simple_repeat Simple_repeat 55 67 0 291 344 90 0 chr15 52209799 52209921 -49170600 + MIR SINE MIR 20 152 -56 187 315 34 45 chr15 52210045 52210134 -49170387 - L2 LINE L2 -177 3095 3008 1688 159 33 20 chr15 52210356 52210657 -49169864 - AluJo SINE Alu -7 305 1 254 217 163 36 chr15 52210717 52210883 -49169638 - L1M4 LINE L1 -3005 3141 2955 2028 125 14 3 chr15 52211435 52211731 -49168790 - AluSg SINE Alu -11 299 1 7738 188 134 26 chr15 52211731 52212395 -49168126 - L1PA16 LINE L1 -4 6865 6274 1750 174 0 7 chr15 52212395 52212683 -49167838 - AluJb SINE Alu -26 286 1 7738 188 134 26 chr15 52212683 52212848 -49167673 - L1PA16 LINE L1 -595 6274 6128 1543 147 4 0 chr15 52212848 52213086 -49167435 - AluJo SINE Alu -1 311 73 7738 188 134 26 chr15 52213086 52213971 -49166550 - L1PA16 LINE L1 -741 6128 5340 390 21 0 0 chr15 52213971 52214018 -49166503 + (TG)n Simple_repeat Simple_repeat 2 48 0 7738 188 134 26 chr15 52214018 52215433 -49165088 - L1PA16 LINE L1 -1529 5340 3364 3556 147 13 0 chr15 52215468 52215992 -49164529 - L1PA16 LINE L1 -6318 531 1 264 159 23 0 chr15 52216059 52216103 -49164418 - MER5B DNA MER1_type -1 177 133 381 194 82 0 chr15 52216250 52216348 -49164173 - L1MC3 LINE L1 -1 7784 7679 27 73 0 0 chr15 52216357 52216412 -49164109 + AT_rich Low_complexity Low_complexity 1 55 0 2904 162 53 9 chr15 52216522 52217046 -49163475 - L1MB2 LINE L1 -3 6168 5622 1967 136 65 26 chr15 52217058 52217397 -49163124 + THE1B LTR MaLR 1 352 -12 231 175 0 0 chr15 52217434 52217474 -49163047 - L1MB2 LINE L1 -569 5611 5572 3490 165 57 32 chr15 52217653 52218538 -49161983 + L1M2 LINE L1 4573 5434 -878 863 173 0 8 chr15 52218538 52218671 -49161850 + AluJo/FLAM SINE Alu 2 133 -169 2324 100 0 3 chr15 52218671 52218971 -49161550 + AluSg SINE Alu 1 299 -11 3490 165 57 32 chr15 52218971 52219261 -49161260 + L1M2 LINE L1 5433 5772 -540 1398 142 36 24 chr15 52219291 52219544 -49160977 - Tigger2 DNA MER2_type -11 2707 2452 4294 136 24 1 chr15 52219593 52220257 -49160264 - Tigger2 DNA MER2_type -1961 757 79 261 83 0 0 chr15 52220289 52220325 -49160196 + (TG)n Simple_repeat Simple_repeat 1 36 0 596 228 123 0 chr15 52220600 52220762 -49159759 - MIR SINE MIR -2 260 79 827 272 0 11 chr15 52220810 52221001 -49159520 - MER5A DNA MER1_type 0 189 1 291 152 51 38 chr15 52221088 52221167 -49159354 - HAL1b LINE L1 0 1348 1269 1343 238 257 13 chr15 52221197 52221738 -49158783 + LTR50 LTR ERVL 120 792 -3 2917 3 0 0 chr15 52221823 52222132 -49158389 + AluYa5 SINE Alu 1 309 -2 2227 67 46 11 chr15 52222138 52222421 -49158100 + AluSx SINE Alu 1 293 -19 4112 100 101 16 chr15 52222532 52223144 -49157377 + MER4A LTR ERV1 1 664 0 4335 171 47 33 chr15 52223264 52223415 -49157106 - L1MB7 LINE L1 -55 6129 5982 1735 124 0 34 chr15 52223415 52223681 -49156840 - AluSx SINE Alu -12 300 44 4335 171 47 33 chr15 52223681 52224533 -49155988 - L1MB7 LINE L1 -202 5982 5113 24 32 0 0 chr15 52225091 52225122 -49155399 + AT_rich Low_complexity Low_complexity 1 31 0 869 213 0 12 chr15 52225165 52225329 -49155192 - FRAM SINE Alu -14 162 1 1024 199 11 5 chr15 52226145 52226336 -49154185 - MIR SINE MIR -38 224 33 359 336 53 60 chr15 52226792 52227182 -49153339 - L2 LINE L2 -198 3074 2686 477 290 95 68 chr15 52227182 52227403 -49153118 + MIR SINE MIR 2 228 -34 2391 80 7 7 chr15 52227574 52227876 -49152645 + AluSx SINE Alu 1 302 -10 571 306 89 32 chr15 52228062 52228431 -49152090 + L2 LINE L2 2004 2393 -921 1820 158 30 0 chr15 52229155 52229458 -49151063 - AluJo SINE Alu 0 312 1 205 335 130 65 chr15 52229621 52229757 -49150764 + L2 LINE L2 3044 3201 -71 1727 148 26 36 chr15 52229757 52230061 -49150460 - AluJb SINE Alu -11 301 1 205 335 130 65 chr15 52230061 52230139 -49150382 + L2 LINE L2 3201 3272 0 489 218 112 82 chr15 52230558 52230728 -49149793 - MER5A DNA MER1_type -1 188 14 708 216 82 26 chr15 52231877 52232071 -49148450 + L2 LINE L2 2602 2806 -508 1328 291 40 36 chr15 52232221 52232692 -49147829 + L2 LINE L2 2836 3308 -5 22 0 0 0 chr15 52233311 52233333 -49147188 + GC_rich Low_complexity Low_complexity 1 22 0 993 169 62 164 chr15 52233952 52234285 -49146236 - MLT1A1 LTR MaLR -3 362 75 2508 61 0 0 chr15 52234285 52234582 -49145939 + AluY SINE Alu 1 297 -14 993 169 62 164 chr15 52234582 52234651 -49145870 - MLT1A1 LTR MaLR -290 75 1 932 76 8 0 chr15 52234654 52234785 -49145736 + L1PA13 LINE L1 5355 5486 -682 376 100 0 0 chr15 52234783 52234833 -49145688 - L1P4 LINE L1 -608 5555 5506 * 4271 84 4 7 chr15 52234834 52235394 -49145127 + L1PA13 LINE L1 5606 6163 0 1417 76 32 0 chr15 52235648 52235833 -49144688 + AluY SINE Alu 110 300 -11 264 265 0 0 chr15 52235833 52235882 -49144639 - MER58 DNA MER1_type -2371 49 1 896 215 15 133 chr15 52236642 52236958 -49143563 - LTR41 LTR ERVL 0 795 497 1109 173 92 28 chr15 52237031 52237280 -49143241 - LTR41 LTR ERVL -508 265 1 280 352 28 59 chr15 52237447 52237482 -49143039 + L2 LINE L2 2449 2484 -830 1973 133 28 0 chr15 52237482 52237768 -49142753 - AluSq SINE Alu -19 294 1 280 352 28 59 chr15 52237768 52237985 -49142536 + L2 LINE L2 2484 2693 -621 2313 201 91 113 chr15 52238001 52238091 -49142430 - L1MD2 LINE L1 -15 6344 6254 1873 163 3 3 chr15 52238091 52238385 -49142136 - AluSx SINE Alu -17 295 2 2313 201 91 113 chr15 52238385 52238985 -49141536 - L1MD2 LINE L1 -105 6254 5671 1406 160 24 101 chr15 52238985 52239322 -49141199 - AluJo SINE Alu -1 311 1 2313 201 91 113 chr15 52239322 52239429 -49141092 - L1MD2 LINE L1 -688 5671 5563 590 336 88 47 chr15 52239429 52239522 -49140999 + L2 LINE L2 2688 2776 -496 2112 98 22 38 chr15 52239522 52239840 -49140681 - AluSp SINE Alu 0 313 1 590 336 88 47 chr15 52239840 52240309 -49140212 + L2 LINE L2 2776 3272 0 1213 145 0 78 chr15 52240596 52240638 -49139883 + AluJo SINE Alu 88 132 -180 1879 143 0 7 chr15 52240638 52240945 -49139576 - AluSx SINE Alu -7 305 1 1213 145 0 78 chr15 52240945 52241144 -49139377 + AluJo SINE Alu 132 310 -2 2394 79 10 0 chr15 52241724 52242029 -49138492 - AluSq SINE Alu -5 308 1 1640 156 44 88 chr15 52242185 52242524 -49137997 - L1MB7 LINE L1 -13 6171 5852 2667 42 0 0 chr15 52242524 52242835 -49137686 - AluY SINE Alu 0 311 1 1640 156 44 88 chr15 52242835 52242906 -49137615 - L1MB7 LINE L1 -332 5852 5779 4426 230 83 38 chr15 52242923 52244401 -49136120 - L1MC4 LINE L1 -5 8037 6493 1313 157 157 43 chr15 52244941 52245126 -49135395 + MER46B DNA MER2_type 1 116 -2615 1912 115 18 11 chr15 52245126 52245425 -49135096 + AluSx SINE Alu 1 301 0 1313 157 157 43 chr15 52245425 52245562 -49134959 + MER46B DNA MER2_type 116 236 0 226 304 124 25 chr15 52245846 52246007 -49134514 - L1M4 LINE L1 -1905 4241 4065 1540 183 25 7 chr15 52246099 52246373 -49134148 + AluJb SINE Alu 1 279 -33 278 135 0 0 chr15 52246373 52246410 -49134111 + Alu SINE Alu 245 281 -21 1979 125 45 3 chr15 52246459 52246747 -49133774 - AluSq SINE Alu -13 300 1 443 286 88 36 chr15 52246769 52247077 -49133444 - L1M4 LINE L1 -2270 3876 3553 661 147 0 0 chr15 52247103 52247198 -49133323 + AluJ/FLAM SINE Alu 2 95 -217 3740 95 3 2 chr15 52247228 52247796 -49132725 + L1P LINE L1 3464 4032 -2114 1724 98 43 120 chr15 52247815 52248140 -49132381 - AluYb8 SINE Alu -18 300 1 4130 198 50 17 chr15 52248140 52248975 -49131546 - L1MA9 LINE L1 -433 5879 5073 1485 165 4 23 chr15 52248975 52249235 -49131286 - AluJo SINE Alu -9 303 49 4130 198 50 17 chr15 52249235 52249615 -49130906 - L1MA9 LINE L1 -1239 5073 4707 2256 90 3 0 chr15 52249615 52249904 -49130617 - AluY SINE Alu -20 291 2 4130 198 50 17 chr15 52249904 52250185 -49130336 - L1MA9 LINE L1 -1605 4707 4280 2207 130 0 10 chr15 52250377 52250685 -49129836 - AluSx SINE Alu -7 305 1 2239 116 0 0 chr15 52250693 52250996 -49129525 - AluSx SINE Alu -9 303 1 2195 178 44 14 chr15 52250996 52251433 -49129088 - L1MB8 LINE L1 -242 5936 5481 2002 157 0 7 chr15 52251433 52251733 -49128788 - AluSx SINE Alu -14 298 1 2195 178 44 14 chr15 52251733 52251794 -49128727 - L1MB8 LINE L1 -697 5481 5423 665 326 101 38 chr15 52251794 52252031 -49128490 - HAL1 LINE L1 -732 1775 1554 2404 101 0 0 chr15 52252031 52252337 -49128184 - AluSg SINE Alu -4 306 1 665 326 101 38 chr15 52252337 52252605 -49127916 - HAL1 LINE L1 -953 1554 1238 234 192 27 14 chr15 52252625 52252698 -49127823 - L1MEd LINE L1 -5041 1078 1005 285 210 93 86 chr15 52252881 52253043 -49127478 - L1MEd LINE L1 -5935 184 22 24 32 0 0 chr15 52253043 52253074 -49127447 + AT_rich Low_complexity Low_complexity 1 31 0 468 0 0 0 chr15 52254530 52254582 -49125939 + (TA)n Simple_repeat Simple_repeat 2 53 0 184 180 120 40 chr15 52254921 52254971 -49125550 - MIR SINE MIR -112 150 97 198 0 0 0 chr15 52255592 52255614 -49124907 + (T)n Simple_repeat Simple_repeat 1 22 0 256 279 221 12 chr15 52255662 52255834 -49124687 + MIR SINE MIR 43 250 -12 1867 199 72 27 chr15 52256703 52257186 -49123335 + MLT1D LTR MaLR 1 505 0 513 178 15 59 chr15 52262708 52262843 -49117678 - L1PA16 LINE L1 -2 6164 6036 2217 113 0 0 chr15 52262907 52263209 -49117312 + AluSg1 SINE Alu 1 302 -7 1963 93 67 8 chr15 52263211 52263520 -49117001 + AluY SINE Alu 1 325 0 2236 96 3 42 chr15 52264052 52264219 -49116302 - AluSp SINE Alu -12 301 150 2347 75 7 26 chr15 52264219 52264525 -49115996 - AluY SINE Alu -11 300 1 2236 96 3 42 chr15 52264525 52264670 -49115851 - AluSp SINE Alu -163 150 1 712 200 54 29 chr15 52264986 52265120 -49115401 - MER58C DNA MER1_type -2205 215 73 2275 94 7 0 chr15 52265120 52265418 -49115103 + AluSq SINE Alu 1 300 -13 712 200 54 29 chr15 52265418 52265488 -49115033 - MER58C DNA MER1_type -2347 73 6 22 0 0 0 chr15 52266749 52266771 -49113750 + AT_rich Low_complexity Low_complexity 1 22 0 1605 189 0 36 chr15 52267285 52267461 -49113060 - AluJo SINE Alu -13 299 137 2275 91 3 0 chr15 52267461 52267757 -49112764 - AluSx SINE Alu -15 297 1 1605 189 0 36 chr15 52267757 52267887 -49112634 - AluJo SINE Alu -175 137 4 2094 125 24 0 chr15 52267968 52268257 -49112264 + AluSx SINE Alu 1 296 -16 2245 95 0 46 chr15 52268296 52268622 -49111899 + AluY SINE Alu 1 311 0 26 0 0 0 chr15 52268999 52269025 -49111496 + AT_rich Low_complexity Low_complexity 1 26 0 2356 45 6 54 chr15 52269161 52269474 -49111047 - AluY SINE Alu -13 298 1 355 266 175 0 chr15 52269659 52269813 -49110708 - MER5A DNA MER1_type 0 189 9 231 127 111 0 chr15 52270930 52270993 -49109528 - L1ME4a LINE L1 -3 6118 6049 549 0 0 0 chr15 52271210 52271271 -49109250 + (TG)n Simple_repeat Simple_repeat 2 62 0 422 174 245 0 chr15 52271395 52271493 -49109028 - FLAM_A SINE Alu -11 122 1 2139 125 3 16 chr15 52271654 52271819 -49108702 - AluSx SINE Alu -13 299 138 2478 70 0 0 chr15 52271819 52272120 -49108401 - AluY SINE Alu -10 301 1 2139 125 3 16 chr15 52272120 52272257 -49108264 - AluSx SINE Alu -174 138 1 263 242 242 0 chr15 52273579 52273670 -49106851 + MIR SINE MIR 86 198 -64 1252 264 260 16 chr15 52273824 52274764 -49105757 + L2 LINE L2 2121 3312 -1 270 214 43 14 chr15 52274835 52274905 -49105616 + MER103 DNA DNA 90 161 -5 946 94 16 0 chr15 52275093 52275220 -49105301 - AluSc SINE Alu -60 249 121 2252 105 3 3 chr15 52275898 52276202 -49104319 - AluSq SINE Alu -9 304 1 2105 105 17 7 chr15 52276393 52276688 -49103833 + AluSx SINE Alu 1 298 -14 270 0 0 0 chr15 52276909 52276939 -49103582 + (TG)n Simple_repeat Simple_repeat 2 31 0 2158 123 0 0 chr15 52276939 52277224 -49103297 - AluSg SINE Alu -25 285 1 456 228 107 8 chr15 52277272 52277412 -49103109 + MLT1H LTR MaLR 413 549 0 403 114 0 43 chr15 52277866 52277936 -49102585 + AluSp SINE Alu 120 186 -127 333 314 55 68 chr15 52278242 52278462 -49102059 + L2 LINE L2 2444 2660 -654 2106 117 3 0 chr15 52278499 52278781 -49101740 - AluSq SINE Alu -30 283 1 285 235 147 0 chr15 52279376 52279478 -49101043 - L1ME LINE L1 -473 5648 5532 230 271 17 0 chr15 52279682 52279741 -49100780 + L3 LINE CR1 904 963 -614 295 338 51 0 chr15 52279868 52279977 -49100544 - MIR3 SINE MIR -43 165 51 324 0 0 0 chr15 52280790 52280826 -49099695 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 1191 203 30 38 chr15 52280831 52281068 -49099453 - AluJo SINE Alu -37 275 41 1471 147 18 139 chr15 52281857 52282252 -49098269 - MER7A DNA MER2_type 0 346 2 1629 68 5 40 chr15 52282562 52282784 -49097737 + AluSq SINE Alu 1 214 -99 2871 3 0 0 chr15 52283727 52284036 -49096485 + AluYb8 SINE Alu 1 309 -9 1951 121 71 3 chr15 52284167 52284449 -49096072 + AluSx SINE Alu 1 301 -11 1361 203 68 18 chr15 52284643 52284924 -49095597 + AluJo SINE Alu 5 299 -13 21 36 0 0 chr15 52284994 52285022 -49095499 + AT_rich Low_complexity Low_complexity 1 28 0 1787 172 34 0 chr15 52285261 52285552 -49094969 - AluJo SINE Alu -11 301 1 1466 183 95 4 chr15 52285693 52285967 -49094554 - AluJb SINE Alu -13 299 1 2616 24 3 0 chr15 52286982 52287279 -49093242 + AluY SINE Alu 1 298 -13 2003 140 0 22 chr15 52287826 52288140 -49092381 - AluSc SINE Alu -2 307 1 2484 63 0 0 chr15 52288151 52288450 -49092071 - AluY SINE Alu -12 299 1 1894 129 54 0 chr15 52288840 52289119 -49091402 + AluSq SINE Alu 1 294 -19 181 262 0 0 chr15 52289169 52289211 -49091310 - L2 LINE L2 -10 3303 3262 430 333 31 5 chr15 52289306 52289498 -49091023 + MIR SINE MIR 66 262 0 2209 99 26 0 chr15 52290645 52290947 -49089574 + AluSg SINE Alu 1 310 0 656 254 39 47 chr15 52291056 52291288 -49089233 + MIR SINE MIR 1 230 -32 1822 140 0 25 chr15 52291335 52291660 -49088861 + AluSx SINE Alu 5 322 0 197 333 83 47 chr15 52292131 52292323 -49088198 - L2 LINE L2 -338 2976 2778 1818 177 0 7 chr15 52292399 52292704 -49087817 + AluJo SINE Alu 1 303 -9 2328 90 0 3 chr15 52295180 52295480 -49085041 - AluSq SINE Alu -14 299 1 753 249 160 50 chr15 52297655 52298117 -49082404 - L1MC4 LINE L1 -94 7948 7436 2269 78 0 3 chr15 52298229 52298511 -49082010 - AluY SINE Alu -17 294 14 21 36 0 0 chr15 52299552 52299580 -49080941 + AT_rich Low_complexity Low_complexity 1 28 0 365 232 30 60 chr15 52299592 52299760 -49080761 - L1ME4a LINE L1 -34 6087 5925 274 167 0 0 chr15 52299839 52299881 -49080640 - 5S rRNA rRNA -79 42 1 250 248 53 68 chr15 52299882 52300015 -49080506 - L1ME4a LINE L1 -319 5802 5672 1937 126 3 17 chr15 52300036 52300330 -49080191 - AluSg SINE Alu -16 294 5 226 344 70 39 chr15 52301102 52301361 -49079160 + L2 LINE L2 2965 3231 -82 1927 112 43 0 chr15 52301362 52301640 -49078881 + AluSx SINE Alu 1 290 -22 279 0 0 0 chr15 52301646 52301677 -49078844 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 320 225 71 47 chr15 52301697 52301866 -49078655 - Charlie7 DNA MER1_type 0 2612 2440 256 289 70 51 chr15 52304623 52304779 -49075742 + L2 LINE L2 2245 2403 -911 329 292 247 6 chr15 52304853 52305031 -49075490 - MIR SINE MIR -10 252 32 1601 219 48 24 chr15 52305032 52305248 -49075273 - L1ME1 LINE L1 -68 6098 5889 2307 96 0 19 chr15 52305248 52305560 -49074961 - AluSq SINE Alu -7 306 1 1601 219 48 24 chr15 52305560 52305829 -49074692 - L1ME1 LINE L1 -277 5889 5676 2239 103 7 3 chr15 52305861 52306161 -49074360 - AluSq SINE Alu -12 301 1 22 0 0 0 chr15 52306174 52306196 -49074325 + AT_rich Low_complexity Low_complexity 1 22 0 1580 188 10 20 chr15 52306300 52306603 -49073918 - AluJb SINE Alu -11 301 2 2328 78 3 10 chr15 52306694 52307001 -49073520 + AluY SINE Alu 1 305 -6 354 230 92 0 chr15 52307045 52307132 -49073389 - MER5A DNA MER1_type -91 98 4 1997 132 0 30 chr15 52307261 52307557 -49072964 - AluSx SINE Alu -10 302 16 1286 173 0 26 chr15 52307596 52307766 -49072755 + MER58B DNA MER1_type 117 281 -2139 1219 234 34 52 chr15 52307766 52308147 -49072374 - MLT1A2 LTR MaLR 0 374 1 1286 173 0 26 chr15 52308147 52308207 -49072314 + MER58B DNA MER1_type 281 341 0 316 228 218 10 chr15 52308235 52308336 -49072185 + MER5A DNA MER1_type 61 182 -7 330 269 60 45 chr15 52308471 52308605 -49071916 - MIR SINE MIR 0 262 127 1727 154 13 13 chr15 52309520 52309818 -49070703 + AluJb SINE Alu 1 298 -14 22 35 0 0 chr15 52309828 52309857 -49070664 + AT_rich Low_complexity Low_complexity 1 29 0 311 354 27 14 chr15 52311361 52311508 -49069013 - L3 LINE CR1 -15 1562 1414 232 283 0 0 chr15 52311831 52311891 -49068630 + (TA)n Simple_repeat Simple_repeat 1 60 0 2176 86 7 4 chr15 52312335 52312614 -49067907 + AluSp SINE Alu 1 280 -33 408 20 0 0 chr15 52312614 52312663 -49067858 + (CA)n Simple_repeat Simple_repeat 1 49 0 2177 109 0 19 chr15 52313198 52313509 -49067012 - AluSx SINE Alu -7 305 1 22 0 0 0 chr15 52314512 52314534 -49065987 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr15 52314968 52315015 -49065506 + AT_rich Low_complexity Low_complexity 1 47 0 464 288 38 38 chr15 52315928 52316088 -49064433 + MIR SINE MIR 14 173 -89 25 31 0 0 chr15 52317012 52317044 -49063477 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr15 52319091 52319126 -49061395 + AT_rich Low_complexity Low_complexity 1 35 0 32 0 0 0 chr15 52319837 52319869 -49060652 + AT_rich Low_complexity Low_complexity 1 32 0 1470 179 32 54 chr15 52319941 52320254 -49060267 - AluJo SINE Alu -6 306 1 288 308 64 32 chr15 52320582 52320738 -49059783 - MIR3 SINE MIR 0 208 48 27 29 0 0 chr15 52322357 52322391 -49058130 + AT_rich Low_complexity Low_complexity 1 34 0 2491 147 7 9 chr15 52322432 52322880 -49057641 - L1MB8 LINE L1 0 6178 5732 30 27 0 0 chr15 52322914 52322951 -49057570 + AT_rich Low_complexity Low_complexity 1 37 0 731 250 93 31 chr15 52322952 52323340 -49057181 + HAL1b LINE L1 902 1313 -35 371 215 0 0 chr15 52323568 52323633 -49056888 - MER2 DNA MER2_type -1 344 280 909 130 19 0 chr15 52323664 52323818 -49056703 - MER2 DNA MER2_type -139 206 50 2025 125 7 0 chr15 52324253 52324571 -49055950 - AluSq SINE Alu 0 320 1 21 0 0 0 chr15 52326843 52326864 -49053657 + AT_rich Low_complexity Low_complexity 1 21 0 1144 194 182 11 chr15 52327179 52327530 -49052991 + Charlie1b DNA MER1_type 112 522 -1 349 392 69 27 chr15 52328414 52328746 -49051775 + L2 LINE L2 2830 3175 -97 188 299 105 62 chr15 52329633 52329957 -49050564 + L2 LINE L2 1542 1879 -1435 336 281 188 60 chr15 52329961 52330269 -49050252 + L2 LINE L2 2020 2287 -1027 2290 98 0 0 chr15 52330269 52330566 -49049955 + AluSc SINE Alu 8 304 -5 336 281 188 60 chr15 52330566 52330852 -49049669 + L2 LINE L2 2287 2690 -624 1159 44 25 13 chr15 52331195 52331354 -49049167 + L1PA6 LINE L1 5993 6153 -1 2357 78 0 3 chr15 52331354 52331650 -49048871 + AluY SINE Alu 1 295 -16 432 265 119 54 chr15 52331989 52332174 -49048347 - L2 LINE L2 0 3313 3117 1140 149 58 10 chr15 52332217 52332425 -49048096 + MER46A DNA MER2_type 17 234 -2 579 284 142 0 chr15 52332499 52332675 -49047846 - MIR SINE MIR -34 228 28 2136 92 46 3 chr15 52332734 52333017 -49047504 + AluSq SINE Alu 1 295 -18 2360 87 0 3 chr15 52333102 52333401 -49047120 + AluSc SINE Alu 1 298 -11 1154 182 4 30 chr15 52333534 52333765 -49046756 + AluJb SINE Alu 83 307 -5 23 54 0 0 chr15 52333820 52333857 -49046664 + AT_rich Low_complexity Low_complexity 1 37 0 2025 118 3 32 chr15 52334538 52334852 -49045669 - AluSx SINE Alu -7 305 1 2102 124 3 0 chr15 52334878 52335176 -49045345 + AluSp SINE Alu 1 299 -14 459 275 74 48 chr15 52335277 52335506 -49045015 + MIR SINE MIR 4 238 -24 26 30 0 0 chr15 52336220 52336253 -49044268 + AT_rich Low_complexity Low_complexity 1 33 0 1731 163 32 3 chr15 52337400 52337683 -49042838 + AluJb SINE Alu 1 291 -21 1472 196 50 7 chr15 52337696 52337976 -49042545 + AluJb SINE Alu 1 292 -20 393 300 55 9 chr15 52338973 52339083 -49041438 + L2 LINE L2 3153 3267 -5 1861 112 77 0 chr15 52339206 52339493 -49041028 - AluSx SINE Alu -3 309 1 281 294 154 7 chr15 52339494 52339637 -49040884 + MIR SINE MIR 96 259 -3 1823 164 0 0 chr15 52340013 52340294 -49040227 - AluJb SINE Alu -31 281 1 227 182 0 0 chr15 52340622 52340666 -49039855 + HY1 scRNA scRNA 67 110 -2 207 0 0 0 chr15 52340668 52340691 -49039830 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3370 205 39 62 chr15 52341637 52342203 -49038318 + L1ME1 LINE L1 4633 5211 -955 1581 189 17 0 chr15 52342203 52342499 -49038022 + AluJb SINE Alu 1 301 -11 3370 205 39 62 chr15 52342499 52342958 -49037563 + L1ME1 LINE L1 5211 5679 -487 2178 93 4 0 chr15 52342958 52343263 -49037258 + AluSg SINE Alu 1 306 0 3370 205 39 62 chr15 52343263 52343792 -49036729 + L1ME1 LINE L1 5679 6148 -18 180 152 0 0 chr15 52344491 52344524 -49035997 + (CA)n Simple_repeat Simple_repeat 2 34 0 289 316 140 15 chr15 52346515 52346651 -49033870 - MIR SINE MIR -57 205 53 1737 118 81 11 chr15 52346968 52347239 -49033282 - AluSx SINE Alu -20 292 3 2081 93 26 58 chr15 52347352 52347664 -49032857 - AluSg SINE Alu -8 302 1 1303 188 26 79 chr15 52347975 52348279 -49032242 + AluJo SINE Alu 1 288 -24 307 222 0 16 chr15 52348224 52348287 -49032234 + AluJ/monomer SINE Alu 237 298 -4 375 236 250 34 chr15 52348400 52348548 -49031973 + MER5A DNA MER1_type 9 188 -1 246 329 12 0 chr15 52348548 52348631 -49031890 - L2 LINE L2 -523 2791 2708 22 0 0 0 chr15 52348836 52348858 -49031663 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr15 52349653 52349682 -49030839 + (A)n Simple_repeat Simple_repeat 1 29 0 2250 95 0 3 chr15 52349831 52350125 -49030396 + AluSg SINE Alu 1 293 -17 2253 119 0 3 chr15 52350367 52350678 -49029843 + AluSx SINE Alu 1 310 -2 203 60 80 0 chr15 52350841 52350891 -49029630 + (TA)n Simple_repeat Simple_repeat 1 54 0 2044 209 86 39 chr15 52350932 52351516 -49029005 + L1ME1 LINE L1 5550 6160 -6 2172 115 0 47 chr15 52352403 52352725 -49027796 - AluSq SINE Alu -6 307 1 518 313 86 58 chr15 52352936 52353368 -49027153 + MLT1H LTR MaLR 106 549 0 660 306 122 14 chr15 52354703 52355490 -49025031 - L1ME3A LINE L1 -222 5948 5073 204 143 0 0 chr15 52355689 52355731 -49024790 + (TC)n Simple_repeat Simple_repeat 1 42 0 1541 179 0 21 chr15 52355742 52356027 -49024494 - AluJo SINE Alu -32 280 2 931 144 72 0 chr15 52357591 52357771 -49022750 + AluSg/x SINE Alu 133 323 0 234 194 42 42 chr15 52358298 52358370 -49022151 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 764 73 3 22 chr15 52359301 52359416 -49021105 + LTR7 LTR ERV1 253 448 -2 1531 83 0 5 chr15 52359419 52359624 -49020897 + HERVH LTR ERV1 2 205 -7508 * 2391 88 0 3 chr15 52359614 52359943 -49020578 + HERVH LTR ERV1 915 1242 -6471 1081 89 11 28 chr15 52359943 52360122 -49020399 + LTR7 LTR ERV1 239 414 -36 2137 127 0 7 chr15 52360242 52360542 -49019979 - AluSx SINE Alu -14 298 1 1971 120 11 11 chr15 52361274 52361587 -49018934 + AluSq SINE Alu 1 313 0 1700 104 104 19 chr15 52361594 52361854 -49018667 + AluSx SINE Alu 1 282 -30 236 75 0 25 chr15 52361857 52361897 -49018624 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1231 117 168 0 chr15 52362201 52362398 -49018123 + MER30 DNA MER1_type 1 230 0 531 377 77 2 chr15 52362398 52362852 -49017669 + L2 LINE L2 2246 2733 -581 2547 120 19 16 chr15 52363129 52363503 -49017018 - THE1C LTR MaLR 0 375 1 527 196 206 22 chr15 52363531 52363715 -49016806 + L1MC4 LINE L1 7825 8042 0 186 222 22 0 chr15 52363862 52363907 -49016614 + L2 LINE L2 3268 3313 0 187 344 54 0 chr15 52363944 52364037 -49016484 - L2 LINE L2 -2 3311 3214 377 279 61 0 chr15 52364687 52364834 -49015687 + L1MEd LINE L1 938 1093 -5279 1532 219 25 12 chr15 52364850 52365238 -49015283 + L1MEd LINE L1 1185 1535 -4849 2396 97 0 3 chr15 52365239 52365549 -49014972 - AluSg SINE Alu -1 309 1 1102 223 41 20 chr15 52365550 52365895 -49014626 - L1M4 LINE L1 -3372 2774 2423 * 1486 226 51 16 chr15 52365892 52365967 -49014554 + L1MEd LINE L1 1521 1592 -4792 1771 179 3 25 chr15 52365967 52366286 -49014235 + AluSx SINE Alu 1 312 0 1486 226 51 16 chr15 52366286 52366896 -49013625 + L1MEd LINE L1 1592 2325 -4059 1171 172 14 14 chr15 52366896 52367105 -49013416 + AluJb SINE Alu 87 295 -17 855 179 26 47 chr15 52367113 52367285 -49013236 + L1MEd LINE L1 2320 2475 -3907 1907 135 0 40 chr15 52367285 52367444 -49013077 - AluSx SINE Alu -27 285 142 2088 126 7 0 chr15 52367444 52367738 -49012783 - AluSc SINE Alu -13 296 1 1907 135 0 40 chr15 52367738 52367875 -49012646 - AluSx SINE Alu -170 142 1 855 179 26 47 chr15 52367875 52368023 -49012498 + L1MEd LINE L1 2475 2625 -3757 771 97 8 81 chr15 52368032 52368156 -49012365 + AluSp/q SINE Alu 185 299 -14 567 206 67 6 chr15 52368157 52368337 -49012184 + L1MEd LINE L1 3001 3191 -3191 837 146 0 22 chr15 52368337 52368474 -49012047 + AluSp/q SINE Alu 175 308 -5 4294 233 55 44 chr15 52368478 52369011 -49011510 + L1MEd LINE L1 3191 3716 -2666 2144 124 0 0 chr15 52369011 52369309 -49011212 + AluSx SINE Alu 1 298 -14 4294 233 55 44 chr15 52369309 52369364 -49011157 + L1MEd LINE L1 3716 3769 -2613 1953 147 13 3 chr15 52369364 52369663 -49010858 - AluSx SINE Alu -10 302 1 4294 233 55 44 chr15 52369663 52370569 -49009952 + L1MEd LINE L1 3769 4703 -1679 1871 168 88 8 chr15 52370608 52370983 -49009538 + L1MB7 LINE L1 5731 6135 -49 491 188 146 0 chr15 52370985 52371081 -49009440 + FLAM_A SINE Alu 2 111 -31 255 31 0 0 chr15 52371086 52371118 -49009403 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 2005 131 3 0 chr15 52371609 52371900 -49008621 - AluSq SINE Alu -21 292 1 2224 92 0 7 chr15 52372017 52372309 -49008212 + AluY SINE Alu 1 290 -21 258 313 0 12 chr15 52372334 52372417 -49008104 + MIR SINE MIR 64 145 -63 2317 112 0 0 chr15 52372862 52373167 -49007354 - AluSg SINE Alu -5 305 1 1965 160 47 21 chr15 52373344 52373682 -49006839 - MER7A DNA MER2_type 0 346 2 2150 124 13 0 chr15 52373685 52373983 -49006538 - AluSx SINE Alu -10 302 1 2375 87 3 0 chr15 52373992 52374292 -49006229 - AluSp SINE Alu -12 301 1 1252 112 6 6 chr15 52374428 52374598 -49005923 + AluSc SINE Alu 1 170 -139 1137 75 0 0 chr15 52374702 52374836 -49005685 + AluSc SINE Alu 152 285 -24 2238 113 3 13 chr15 52374847 52375158 -49005363 + AluSp SINE Alu 1 308 -5 1624 203 0 0 chr15 52375169 52375445 -49005076 + AluJo SINE Alu 3 278 -34 291 71 0 0 chr15 52375448 52375490 -49005031 + (CAA)n Simple_repeat Simple_repeat 1 42 0 882 203 130 5 chr15 52375621 52375813 -49004708 + MER20 DNA MER1_type 1 216 -3 25 51 0 0 chr15 52376205 52376244 -49004277 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr15 52377008 52377031 -49003490 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr15 52377340 52377365 -49003156 + (A)n Simple_repeat Simple_repeat 1 25 0 21 36 0 0 chr15 52378026 52378054 -49002467 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr15 52379601 52379628 -49000893 + (TC)n Simple_repeat Simple_repeat 2 28 0 216 0 0 0 chr15 52379627 52379651 -49000870 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 275 0 29 0 chr15 52379650 52379685 -49000836 + (CA)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr15 52379696 52379718 -49000803 + (TA)n Simple_repeat Simple_repeat 2 23 0 24 32 0 0 chr15 52379786 52379817 -49000704 + AT_rich Low_complexity Low_complexity 1 31 0 326 218 29 23 chr15 52380399 52380573 -48999948 + GA-rich Low_complexity Low_complexity 3 177 0 709 169 39 15 chr15 52380890 52381020 -48999501 - FLAM_A SINE Alu 0 133 1 21 0 0 0 chr15 52384069 52384090 -48996431 + GC_rich Low_complexity Low_complexity 1 21 0 1278 125 59 70 chr15 52385882 52386138 -48994383 + AluJo SINE Alu 6 258 -54 2171 107 20 0 chr15 52386859 52387157 -48993364 + AluSx SINE Alu 2 305 -7 336 262 97 0 chr15 52387258 52387361 -48993160 - MARNA DNA Mariner -206 380 268 225 86 0 0 chr15 52387813 52387848 -48992673 - L2 LINE L2 -5 3308 3274 2259 79 41 0 chr15 52387971 52388262 -48992259 + AluYa5 SINE Alu 1 303 -8 395 80 65 62 chr15 52388501 52388590 -48991931 + L1M3 LINE L1 5516 5607 -561 1972 146 0 10 chr15 52388590 52388892 -48991629 + AluSx SINE Alu 1 299 -13 744 233 0 0 chr15 52388900 52389033 -48991488 + FLAM_A SINE Alu 1 133 0 262 77 58 0 chr15 52389038 52389090 -48991431 + L1MB4 LINE L1 6125 6179 -1 1013 98 15 0 chr15 52389127 52389260 -48991261 + AluSq/x SINE Alu 1 135 -178 2336 72 7 3 chr15 52389260 52389566 -48990955 + AluY SINE Alu 2 308 -3 1287 171 14 110 chr15 52389576 52389922 -48990599 + AluSq SINE Alu 1 313 0 239 279 35 58 chr15 52389947 52390033 -48990488 + L3 LINE CR1 436 519 -1058 293 276 141 54 chr15 52390816 52391001 -48989520 + L3 LINE CR1 538 738 -839 2302 110 0 0 chr15 52391001 52391301 -48989220 + AluSx SINE Alu 1 300 -12 2215 127 0 3 chr15 52391707 52392014 -48988507 + AluSx SINE Alu 1 306 -6 1715 187 112 64 chr15 52392135 52392573 -48987948 - LTR40b LTR ERVL -3 459 1 200 370 80 6 chr15 52392576 52392738 -48987783 - L2 LINE L2 -228 3044 2871 2303 92 10 0 chr15 52392790 52393084 -48987437 - AluY SINE Alu -14 297 1 585 289 53 22 chr15 52393259 52393487 -48987034 - MIR SINE MIR -27 235 1 634 306 80 52 chr15 52393758 52394121 -48986400 + L3 LINE CR1 798 1170 -407 2327 153 9 68 chr15 52394128 52394482 -48986039 + MER47B DNA MER2_type 6 331 -1992 2017 135 20 3 chr15 52394482 52394778 -48985743 - AluSx SINE Alu -11 301 1 2327 153 9 68 chr15 52394778 52394862 -48985659 + MER47B DNA MER2_type 331 418 0 325 247 68 92 chr15 52394894 52394943 -48985578 - MIR SINE MIR -65 143 94 2006 105 11 18 chr15 52394943 52395276 -48985245 + AluSx SINE Alu 1 331 0 325 247 68 92 chr15 52395276 52395353 -48985168 - MIR SINE MIR -114 94 16 2286 101 3 3 chr15 52395797 52396103 -48984418 + AluSq SINE Alu 1 306 -7 198 206 0 0 chr15 52396400 52396434 -48984087 + L2 LINE L2 3210 3243 -29 2392 78 0 13 chr15 52397647 52397954 -48982567 - AluY SINE Alu -8 303 1 2011 108 42 3 chr15 52397955 52398242 -48982279 - AluSx SINE Alu -14 298 1 428 106 12 0 chr15 52398901 52398986 -48981535 + (TA)n Simple_repeat Simple_repeat 2 87 0 2087 98 7 7 chr15 52398986 52399273 -48981248 - AluSq SINE Alu -26 287 1 2210 96 0 37 chr15 52399308 52399630 -48980891 + AluY SINE Alu 1 310 -1 1198 127 0 6 chr15 52399637 52399818 -48980703 + AluSg/x SINE Alu 118 297 -13 2202 78 3 7 chr15 52399818 52400111 -48980410 + AluY SINE Alu 1 292 -19 2573 101 2 55 chr15 52400129 52400527 -48979994 + MER48 LTR ERV1 8 384 -3 2007 97 0 53 chr15 52400593 52400912 -48979609 - AluSc SINE Alu -7 302 1 1546 256 81 16 chr15 52401170 52401677 -48978844 - HAL1 LINE L1 -607 1900 1361 1456 177 27 24 chr15 52401705 52401999 -48978522 - AluJo SINE Alu -17 295 1 23 0 0 0 chr15 52402244 52402267 -48978254 + AT_rich Low_complexity Low_complexity 1 23 0 2255 78 3 19 chr15 52402370 52402678 -48977843 + AluY SINE Alu 3 305 -6 2058 116 3 16 chr15 52402689 52402999 -48977522 - AluSq SINE Alu -7 306 1 216 0 0 0 chr15 52403188 52403212 -48977309 + (CA)n Simple_repeat Simple_repeat 1 24 0 2029 127 0 13 chr15 52403692 52404008 -48976513 + AluSx SINE Alu 1 312 0 1094 116 83 6 chr15 52404147 52404328 -48976193 - AluSg/x SINE Alu -6 304 110 1984 132 0 3 chr15 52404397 52404693 -48975828 + AluSx SINE Alu 1 295 -17 2020 102 7 10 chr15 52404698 52404991 -48975530 + AluSc SINE Alu 3 294 -15 810 248 5 59 chr15 52405007 52405117 -48975404 + MIR SINE MIR 42 136 -126 2106 115 0 0 chr15 52405117 52405413 -48975108 + AluSc SINE Alu 1 296 -13 810 248 5 59 chr15 52405413 52405524 -48974997 + MIR SINE MIR 136 251 -11 287 213 184 64 chr15 52405996 52406137 -48974384 - MLT1J1 LTR MaLR 0 446 289 * 655 242 31 0 chr15 52406135 52406296 -48974225 - MLT1J2 LTR MaLR -247 203 38 1924 151 3 0 chr15 52406298 52406603 -48973918 + AluSq SINE Alu 1 306 -7 1062 153 11 0 chr15 52406603 52406780 -48973741 + AluSg/x SINE Alu 134 312 0 364 227 0 0 chr15 52407066 52407132 -48973389 - Tigger7 DNA MER2_type -520 213 148 687 123 0 0 chr15 52407132 52407238 -48973283 - AluSx SINE Alu -15 295 190 * 776 103 0 0 chr15 52407235 52407342 -48973179 - AluSx SINE Alu -206 107 1 402 147 53 27 chr15 52407342 52407408 -48973113 - Tigger7 DNA MER2_type -2331 156 86 1900 118 14 0 chr15 52407408 52407705 -48972816 - AluSx SINE Alu -11 301 1 1017 201 78 78 chr15 52407707 52408026 -48972495 - MLT1D LTR MaLR -186 319 1 1667 233 95 7 chr15 52408026 52408446 -48972075 - MLT1F LTR MaLR -85 457 1 242 213 49 16 chr15 52408830 52408891 -48971630 + MER41A LTR ERV1 400 462 -92 2199 110 0 0 chr15 52409025 52409325 -48971196 - AluSx SINE Alu -12 300 1 930 132 15 56 chr15 52409325 52409522 -48970999 - AluSp SINE Alu -11 302 114 1900 156 0 0 chr15 52409548 52409849 -48970672 - AluSx SINE Alu -9 303 3 2093 110 0 3 chr15 52410713 52411013 -48969508 + AluSx SINE Alu 1 299 -13 810 184 7 26 chr15 52411081 52411233 -48969288 - FAM SINE Alu -36 149 1 1126 93 0 13 chr15 52411492 52411643 -48968878 + AluSq/x SINE Alu 1 149 -163 391 83 0 0 chr15 52411643 52411691 -48968830 + AluY SINE Alu 202 249 -52 1112 156 18 36 chr15 52411691 52411915 -48968606 + AluSq SINE Alu 85 304 -9 221 309 9 142 chr15 52412867 52413197 -48967324 - L2 LINE L2 -70 3202 2917 2392 67 0 6 chr15 52413204 52413516 -48967005 + AluY SINE Alu 1 310 -1 1236 171 146 25 chr15 52413598 52413664 -48966857 + AluJb SINE Alu 1 58 -254 2208 103 3 0 chr15 52413664 52413966 -48966555 + AluSp SINE Alu 1 303 -10 1236 171 146 25 chr15 52413966 52414174 -48966347 + AluJb SINE Alu 58 308 -4 2311 88 0 3 chr15 52414295 52414603 -48965918 + AluY SINE Alu 1 307 -4 1466 204 6 29 chr15 52414970 52415284 -48965237 + AluJo SINE Alu 6 312 0 190 309 104 55 chr15 52415402 52415622 -48964899 + L2 LINE L2 2926 3156 -116 1964 117 3 0 chr15 52416183 52416465 -48964056 + AluSx SINE Alu 23 305 -7 913 248 4 32 chr15 52416561 52416839 -48963682 - L1MD3 LINE L1 -12 7983 7714 357 323 86 45 chr15 52416964 52417184 -48963337 - L1M4 LINE L1 -1312 4834 4606 1865 179 3 0 chr15 52417186 52417493 -48963028 + AluSx SINE Alu 1 308 -4 443 270 237 50 chr15 52418030 52418393 -48962128 + L2 LINE L2 2840 3270 -2 1898 128 0 4 chr15 52418526 52418807 -48961714 - AluSg SINE Alu -30 280 1 2051 127 0 10 chr15 52418809 52419116 -48961405 - AluSx SINE Alu -8 304 1 552 257 44 7 chr15 52419116 52419252 -48961269 - MIR SINE MIR -37 225 85 299 337 10 0 chr15 52419331 52419432 -48961089 + MIR3 SINE MIR 92 193 -15 811 183 0 0 chr15 52419530 52419667 -48960854 + FRAM SINE Alu 1 136 -40 432 130 0 0 chr15 52419673 52419742 -48960779 + (GA)n Simple_repeat Simple_repeat 1 69 0 342 70 21 4 chr15 52420503 52420562 -48959959 - Alu SINE Alu -256 46 1 557 219 41 41 chr15 52420564 52420580 -48959941 - MIR SINE MIR -98 164 149 2650 164 20 4 chr15 52420580 52420855 -48959666 - MLT1C LTR MaLR 0 467 181 2379 52 10 16 chr15 52420855 52421160 -48959361 - AluY SINE Alu -8 303 1 2650 164 20 4 chr15 52421160 52421341 -48959180 - MLT1C LTR MaLR -286 181 4 557 219 41 41 chr15 52421341 52421470 -48959051 - MIR SINE MIR -112 150 19 237 297 135 8 chr15 52421804 52421961 -48958560 - MIR SINE MIR -62 146 16 194 347 14 0 chr15 52422720 52422792 -48957729 - L2 LINE L2 -1537 1777 1705 481 297 88 17 chr15 52423059 52423298 -48957223 + MIR SINE MIR 5 260 -2 468 0 0 0 chr15 52423637 52423689 -48956832 + (CA)n Simple_repeat Simple_repeat 2 53 0 2096 117 10 3 chr15 52424990 52425299 -48955222 + AluSx SINE Alu 1 311 -1 567 230 96 28 chr15 52425782 52425960 -48954561 - MIR SINE MIR 0 262 73 830 143 0 48 chr15 52425977 52426124 -48954397 + AluJb SINE Alu 11 150 -162 2041 103 0 0 chr15 52426683 52426964 -48953557 + AluSx SINE Alu 1 281 -31 1493 135 17 76 chr15 52427337 52427460 -48953061 + AluJb SINE Alu 7 136 -176 2020 100 25 0 chr15 52427460 52427740 -48952781 + AluSg SINE Alu 1 287 -23 1493 135 17 76 chr15 52427740 52427905 -48952616 + AluJb SINE Alu 136 278 -34 1187 162 0 5 chr15 52428019 52428241 -48952280 + AluJb SINE Alu 86 306 0 2142 107 125 41 chr15 52429355 52429747 -48950774 + MSTA LTR MaLR 3 427 -1 378 292 0 54 chr15 52429879 52429899 -48950622 - L2 LINE L2 -8 3305 3285 1362 218 78 48 chr15 52429899 52429939 -48950582 - MLT2D LTR ERVL 0 414 377 267 103 0 0 chr15 52429939 52429978 -48950543 + (CA)n Simple_repeat Simple_repeat 1 39 0 1362 218 78 48 chr15 52429978 52430249 -48950272 - MLT2D LTR ERVL -37 377 86 2387 71 0 0 chr15 52430249 52430560 -48949961 + AluY SINE Alu 1 311 0 1362 218 78 48 chr15 52430560 52430647 -48949874 - MLT2D LTR ERVL -328 86 3 378 292 0 54 chr15 52430647 52430756 -48949765 - L2 LINE L2 -28 3285 3183 190 231 55 121 chr15 52430971 52431062 -48949459 - MIR SINE MIR -55 153 69 1713 186 23 32 chr15 52431193 52431537 -48948984 - MLT1A1 LTR MaLR -24 341 1 237 211 40 79 chr15 52432573 52432649 -48947872 - MIR SINE MIR -3 259 187 453 273 0 0 chr15 52432655 52432754 -48947767 + L2 LINE L2 3202 3300 -13 1690 159 44 14 chr15 52432780 52433076 -48947445 - AluJo SINE Alu -7 305 1 2239 139 31 19 chr15 52433120 52433480 -48947041 + THE1B LTR MaLR 1 364 0 2276 68 3 0 chr15 52433480 52433772 -48946749 + THE1B-int LTR MaLR 1 293 -1287 * 4193 111 0 0 chr15 52433769 52434329 -48946192 + THE1B-int LTR MaLR 668 1227 -353 514 226 40 32 chr15 52435562 52435686 -48944835 - L2 LINE L2 -2 3311 3187 207 0 0 0 chr15 52435761 52435784 -48944737 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1461 137 17 0 chr15 52435798 52436031 -48944490 + AluSq SINE Alu 72 308 -5 305 287 274 6 chr15 52436158 52436322 -48944199 - MIR SINE MIR -34 228 21 2020 137 0 0 chr15 52436882 52437174 -48943347 - AluSx SINE Alu -20 292 1 253 213 46 9 chr15 52438424 52438532 -48941989 + CT-rich Low_complexity Low_complexity 1 112 0 226 258 79 34 chr15 52439277 52439366 -48941155 - MIR3 SINE MIR -15 193 101 447 233 227 6 chr15 52439396 52439559 -48940962 - MIR SINE MIR 0 262 64 237 65 0 0 chr15 52439966 52439997 -48940524 + (CA)n Simple_repeat Simple_repeat 1 31 0 2306 70 3 3 chr15 52440003 52440304 -48940217 - AluY SINE Alu -10 301 1 273 139 0 0 chr15 52440317 52440360 -48940161 - tRNA-Cys-TGC tRNA tRNA -32 43 1 2073 100 28 0 chr15 52440369 52440659 -48939862 - AluY SINE Alu -13 298 1 290 344 187 8 chr15 52440680 52440921 -48939600 - L3 LINE CR1 -116 1461 1178 230 274 0 16 chr15 52441243 52441305 -48939216 + MIR3 SINE MIR 130 190 -18 1828 150 0 10 chr15 52443020 52443313 -48937208 - AluJb SINE Alu -17 295 6 1031 147 0 0 chr15 52443325 52443488 -48937033 - AluSg/x SINE Alu -13 297 135 522 258 116 21 chr15 52443508 52443807 -48936714 + HAL1 LINE L1 816 1150 -1357 189 74 0 0 chr15 52443807 52443834 -48936687 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 522 258 116 21 chr15 52443834 52443863 -48936658 + HAL1 LINE L1 1150 1175 -1332 1351 138 0 0 chr15 52443865 52444061 -48936460 + AluSx SINE Alu 1 196 -116 1226 267 140 32 chr15 52444091 52444706 -48935815 + HAL1 LINE L1 1237 1917 -590 2018 117 3 0 chr15 52444853 52445160 -48935361 + AluSq SINE Alu 1 308 0 17254 46 1 1 chr15 52445176 52447913 -48932608 + L1PA5 LINE L1 3266 6003 -151 1215 28 0 0 chr15 52448025 52448167 -48932354 + L1PA5 LINE L1 6002 6143 -11 234 0 0 0 chr15 52448174 52448200 -48932321 + (CAA)n Simple_repeat Simple_repeat 2 27 0 332 239 33 22 chr15 52448325 52448417 -48932104 + HAL1b LINE L1 746 838 -510 1680 153 0 0 chr15 52448535 52448790 -48931731 + AluSq SINE Alu 1 255 -58 321 115 0 0 chr15 52448890 52448942 -48931579 + AluSq SINE Alu 250 301 0 267 152 61 0 chr15 52449024 52449090 -48931431 + HAL1 LINE L1 2245 2314 -193 2080 128 3 0 chr15 52449096 52449400 -48931121 + AluSx SINE Alu 1 305 -7 2619 203 92 30 chr15 52449497 52450232 -48930289 - L1MC4a LINE L1 0 7808 7028 730 170 14 41 chr15 52450253 52450400 -48930121 - FRAM SINE Alu -11 165 23 1610 173 23 3 chr15 52450402 52450703 -48929818 - L1MD3 LINE L1 -932 7063 6757 336 48 0 0 chr15 52450704 52450746 -48929775 + (TATG)n Simple_repeat Simple_repeat 2 43 0 1350 228 131 3 chr15 52450749 52451131 -48929390 - L1MC4a LINE L1 -1203 6605 6175 1355 154 3 89 chr15 52451131 52451424 -48929097 - AluJb SINE Alu -17 295 28 1187 148 0 0 chr15 52451433 52451609 -48928912 - MLT1C LTR MaLR -291 176 1 228 136 23 0 chr15 52451619 52451663 -48928858 - L1MC4a LINE L1 -1797 6011 5967 960 168 18 0 chr15 52451669 52451836 -48928685 - MER6 DNA MER2_type 0 865 696 725 143 0 0 chr15 52451945 52452073 -48928448 + AluSp/q SINE Alu 188 315 0 2277 68 0 23 chr15 52452081 52452388 -48928133 - AluY SINE Alu -11 300 1 3672 167 49 13 chr15 52452392 52452470 -48928051 - MER6 DNA MER2_type -171 694 620 1730 154 28 21 chr15 52452470 52452755 -48927766 + AluJo SINE Alu 5 291 -21 3672 167 49 13 chr15 52452755 52453346 -48927175 - MER6 DNA MER2_type -245 620 1 442 200 32 16 chr15 52453346 52453471 -48927050 - L1MC4a LINE L1 -1850 5958 5832 1890 97 0 8 chr15 52453475 52453722 -48926799 - AluSp SINE Alu -12 301 57 1648 198 113 31 chr15 52453851 52454330 -48926191 - L1MC4a LINE L1 -1980 5828 5311 2045 168 67 7 chr15 52454334 52454740 -48925781 - L1MB8 LINE L1 -31 6147 5718 342 287 86 77 chr15 52454830 52455051 -48925470 - L1MC4a LINE L1 -1312 4834 4607 2341 106 3 0 chr15 52455051 52455363 -48925158 + AluSp SINE Alu 1 313 0 342 287 86 77 chr15 52455363 52455479 -48925042 - L1MC4a LINE L1 -1539 4607 4494 2267 71 7 0 chr15 52456996 52457323 -48923198 + AluY SINE Alu 1 329 0 180 363 117 24 chr15 52459233 52459481 -48921040 + L2 LINE L2 2538 2808 -506 743 177 0 57 chr15 52459854 52459995 -48920526 - FLAM_A SINE Alu 0 133 1 21 0 0 0 chr15 52460409 52460430 -48920091 + AT_rich Low_complexity Low_complexity 1 21 0 2182 107 3 26 chr15 52460585 52460893 -48919628 + AluSx SINE Alu 1 301 -11 236 139 0 0 chr15 52461024 52461067 -48919454 - L1P LINE L1 -758 5396 5354 4579 85 33 0 chr15 52461068 52461671 -48918850 - L1PA11 LINE L1 -1 6173 5551 1559 159 71 29 chr15 52461886 52462052 -48918469 + MER33 DNA MER1_type 3 161 -2424 2193 101 3 3 chr15 52462052 52462340 -48918181 - AluSq SINE Alu -22 291 4 1559 159 71 29 chr15 52462340 52462482 -48918039 + MER33 DNA MER1_type 161 324 0 585 124 0 0 chr15 52464015 52464104 -48916417 - AluSp/q SINE Alu -5 308 220 893 184 149 10 chr15 52464204 52464405 -48916116 + MLT1E2 LTR MaLR 398 626 0 306 283 268 0 chr15 52464465 52464603 -48915918 + MIR SINE MIR 74 248 -14 22 0 0 0 chr15 52466818 52466840 -48913681 + AT_rich Low_complexity Low_complexity 1 22 0 360 241 43 34 chr15 52467034 52467172 -48913349 - MIR SINE MIR -61 147 32 316 304 36 18 chr15 52467654 52467766 -48912755 + L2 LINE L2 3156 3269 -3 1380 165 0 28 chr15 52469791 52470040 -48910481 - AluJo SINE Alu -11 301 60 1867 147 0 4 chr15 52470040 52470312 -48910209 - AluSx SINE Alu -41 271 1 442 171 248 16 chr15 52471294 52471423 -48909098 - MER103 DNA DNA -2 164 6 2057 128 3 3 chr15 52471511 52471807 -48908714 - AluSx SINE Alu -16 296 1 2000 111 0 11 chr15 52472399 52472670 -48907851 + AluSx SINE Alu 21 288 -24 1183 149 11 5 chr15 52473514 52473702 -48906819 + AluJb SINE Alu 1 189 -123 207 0 0 0 chr15 52474077 52474100 -48906421 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 418 360 49 17 chr15 52474110 52474457 -48906064 + L2 LINE L2 1752 2109 -1205 413 306 106 73 chr15 52474710 52475150 -48905371 + L2 LINE L2 2560 3009 -263 378 0 0 0 chr15 52475335 52475377 -48905144 + (CA)n Simple_repeat Simple_repeat 2 43 0 1659 166 3 37 chr15 52475377 52475537 -48904984 - AluJo SINE Alu -26 286 139 2115 117 0 7 chr15 52475537 52475827 -48904694 - AluSx SINE Alu -20 292 5 1659 166 3 37 chr15 52475827 52475962 -48904559 - AluJo SINE Alu -173 139 1 2242 107 0 10 chr15 52476151 52476459 -48904062 + AluSx SINE Alu 1 305 -7 23 33 0 0 chr15 52476643 52476673 -48903848 + AT_rich Low_complexity Low_complexity 1 30 0 2131 125 0 13 chr15 52478018 52478331 -48902190 - AluJb SINE Alu -2 310 2 2297 109 3 0 chr15 52478699 52479003 -48901518 + AluSc SINE Alu 1 305 -4 387 0 0 0 chr15 52479003 52479046 -48901475 + (TA)n Simple_repeat Simple_repeat 1 43 0 335 285 72 53 chr15 52479106 52479313 -48901208 + L1MC4 LINE L1 7831 8041 -1 2342 142 46 24 chr15 52479880 52479935 -48900586 + L1MB3 LINE L1 5722 5774 -409 2177 120 7 0 chr15 52479935 52480235 -48900286 - AluSg SINE Alu -8 302 1 2342 142 46 24 chr15 52480235 52480595 -48899926 + L1MB3 LINE L1 5774 6146 -37 2254 54 43 0 chr15 52480596 52480874 -48899647 - AluY SINE Alu -21 290 1 1626 163 58 0 chr15 52481404 52481681 -48898840 - AluJo SINE Alu -19 293 1 2323 138 48 20 chr15 52481905 52482259 -48898262 + THE1B LTR MaLR 1 364 0 322 216 32 21 chr15 52482288 52482424 -48898097 - MIR SINE MIR -66 196 2 212 204 18 142 chr15 52482821 52482934 -48897587 - L2 LINE L2 -15 3298 3200 644 262 91 19 chr15 52483506 52483716 -48896805 + MIR SINE MIR 12 236 -26 1017 203 6 0 chr15 52483811 52483993 -48896528 - AluJo SINE Alu -12 300 118 231 165 134 41 chr15 52484165 52484262 -48896259 - L1MEd LINE L1 -5024 1095 990 835 274 85 0 chr15 52484290 52484513 -48896008 + MIR SINE MIR 10 251 -11 2276 99 26 3 chr15 52484787 52485090 -48895431 - AluSx SINE Alu -2 310 1 2203 116 0 10 chr15 52486668 52486970 -48893551 - AluSx SINE Alu 0 312 14 2042 120 0 0 chr15 52488175 52488451 -48892070 - AluSp SINE Alu -13 300 25 204 195 65 0 chr15 52488605 52488682 -48891839 + (TTTAA)n Simple_repeat Simple_repeat 1 82 0 25 0 0 0 chr15 52488694 52488719 -48891802 + AT_rich Low_complexity Low_complexity 1 25 0 2335 75 3 23 chr15 52488742 52489048 -48891473 - AluY SINE Alu -11 300 1 193 212 59 47 chr15 52489098 52489183 -48891338 + MIR SINE MIR 127 212 -50 373 268 84 78 chr15 52489991 52490170 -48890351 - LTR67 LTR ERVL -376 181 2 272 267 96 37 chr15 52490176 52490311 -48890210 + L1ME LINE L1 5762 5904 -280 278 125 0 0 chr15 52490335 52490375 -48890146 - LTR54 LTR ERV1 -68 442 403 2449 88 0 0 chr15 52490421 52490727 -48889794 - AluSp SINE Alu -7 306 1 2269 112 3 0 chr15 52490964 52491269 -48889252 + AluSq SINE Alu 1 306 -7 483 165 165 0 chr15 52491526 52491641 -48888880 - L1ME1 LINE L1 -105 6061 5928 306 0 0 0 chr15 52491641 52491675 -48888846 + (TA)n Simple_repeat Simple_repeat 2 35 0 222 62 0 0 chr15 52491686 52491718 -48888803 + (GA)n Simple_repeat Simple_repeat 1 32 0 2054 131 0 3 chr15 52491718 52492001 -48888520 - AluSx SINE Alu -30 282 1 255 260 63 39 chr15 52492275 52492402 -48888119 - MIR SINE MIR -37 225 96 286 31 0 0 chr15 52492403 52492435 -48888086 - U2 snRNA snRNA -150 38 7 294 338 26 2 chr15 52492441 52492537 -48887984 - MIR SINE MIR -101 107 10 1977 135 7 7 chr15 52492657 52492953 -48887568 + AluSq SINE Alu 1 296 -17 1012 97 35 14 chr15 52492953 52493097 -48887424 + AluSg/x SINE Alu 134 280 -32 1324 246 101 8 chr15 52493334 52493721 -48886800 + L1ME1 LINE L1 5739 6161 -5 217 333 20 29 chr15 52495455 52495557 -48884964 + L2 LINE L2 2584 2684 -630 184 336 49 35 chr15 52495659 52495802 -48884719 + L2 LINE L2 2825 2969 -303 457 248 79 82 chr15 52495827 52496120 -48884401 + L1ME4a LINE L1 5658 5957 -164 2082 138 20 0 chr15 52496269 52496573 -48883948 - AluSx SINE Alu -2 310 1 22 0 0 0 chr15 52496633 52496655 -48883866 + AT_rich Low_complexity Low_complexity 1 22 0 1150 179 5 27 chr15 52496678 52496902 -48883619 + AluJo SINE Alu 76 294 -18 399 281 26 39 chr15 52497023 52497176 -48883345 - L1MC4a LINE L1 -1882 5926 5776 1993 139 13 13 chr15 52497255 52497557 -48882964 - AluSx SINE Alu -10 302 1 808 250 61 5 chr15 52497739 52497951 -48882570 - MER58A DNA MER1_type 0 224 1 490 244 0 53 chr15 52497951 52498082 -48882439 + L2 LINE L2 3189 3312 -1 1934 128 14 11 chr15 52498362 52498671 -48881850 + AluSx SINE Alu 1 310 0 338 172 17 0 chr15 52498690 52498748 -48881773 + MER90 LTR ERV1 1 59 -516 * 2210 169 90 0 chr15 52498747 52499149 -48881372 + MER90 LTR ERV1 177 614 0 285 258 34 11 chr15 52499951 52500040 -48880481 + L2 LINE L2 3223 3313 0 1888 109 11 0 chr15 52500368 52500642 -48879879 + L1MA2 LINE L1 6028 6304 0 21 0 0 0 chr15 52500741 52500762 -48879759 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr15 52501461 52501496 -48879025 + AT_rich Low_complexity Low_complexity 1 35 0 707 123 39 32 chr15 52502379 52502533 -48877988 + L1MA7 LINE L1 6137 6291 0 465 322 54 24 chr15 52503177 52503350 -48877171 + L1M4 LINE L1 4456 4622 -1524 2325 95 3 3 chr15 52503350 52503654 -48876867 + AluSp SINE Alu 1 304 -9 465 322 54 24 chr15 52503654 52503850 -48876671 + L1M4 LINE L1 4622 4836 -1310 2356 102 0 0 chr15 52503866 52504169 -48876352 + AluSx SINE Alu 1 303 -9 305 324 50 41 chr15 52504236 52504455 -48876066 + L1M4 LINE L1 4924 5144 -1002 247 242 16 81 chr15 52504879 52504903 -48875618 + CT-rich Low_complexity Low_complexity 3 27 -149 1587 165 69 0 chr15 52504903 52505164 -48875357 - AluJo SINE Alu -33 279 1 247 242 16 81 chr15 52505164 52505325 -48875196 + CT-rich Low_complexity Low_complexity 27 176 0 2112 137 0 0 chr15 52506724 52507023 -48873498 + AluSx SINE Alu 1 299 -13 2401 131 8 14 chr15 52507323 52507689 -48872832 + THE1B LTR MaLR 1 364 0 348 309 86 37 chr15 52507776 52507938 -48872583 - MIR3 SINE MIR -9 199 30 21 82 0 0 chr15 52508475 52508524 -48871997 + AT_rich Low_complexity Low_complexity 1 49 0 291 28 0 0 chr15 52508809 52508845 -48871676 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 1819 167 0 3 chr15 52509474 52509762 -48870759 - AluJb SINE Alu -2 310 24 235 196 36 0 chr15 52511151 52511207 -48869314 + L1ME4a LINE L1 6059 6116 -5 225 0 0 0 chr15 52511225 52511250 -48869271 + (TAA)n Simple_repeat Simple_repeat 2 26 0 23 54 0 0 chr15 52511323 52511360 -48869161 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr15 52512834 52512874 -48867647 + AT_rich Low_complexity Low_complexity 1 40 0 1994 257 75 52 chr15 52513114 52513644 -48866877 + L1MD3 LINE L1 11 527 -5734 2150 126 3 0 chr15 52513644 52513945 -48866576 + AluSx SINE Alu 3 304 -8 1994 257 75 52 chr15 52513945 52514252 -48866269 + L1MD3 LINE L1 527 825 -5436 1930 134 0 28 chr15 52514252 52514568 -48865953 - AluSx SINE Alu 0 308 1 1994 257 75 52 chr15 52514568 52515496 -48865025 + L1MD3 LINE L1 825 1875 -4386 352 272 89 0 chr15 52515528 52515757 -48864764 + L1MD3 LINE L1 1921 2176 -3904 23 54 0 0 chr15 52515770 52515807 -48864714 + AT_rich Low_complexity Low_complexity 1 37 0 806 163 0 15 chr15 52515820 52515955 -48864566 - FLAM_C SINE Alu 0 133 1 4424 206 70 24 chr15 52515958 52517050 -48863471 - L1MC4a LINE L1 0 7808 6667 509 263 67 0 chr15 52517059 52517238 -48863283 + L1MD3 LINE L1 2168 2358 -3722 * 1075 227 100 19 chr15 52517223 52517762 -48862759 + L1MD3 LINE L1 5182 5411 -687 2100 128 3 6 chr15 52517762 52518074 -48862447 - AluSq SINE Alu -2 311 1 1075 227 100 19 chr15 52518074 52518138 -48862383 + L1MD3 LINE L1 5411 5468 -630 1652 295 119 26 chr15 52518158 52518958 -48861563 + HAL1 LINE L1 489 1412 -1095 2110 125 0 13 chr15 52518958 52519261 -48861260 + AluSg SINE Alu 1 299 -11 1652 295 119 26 chr15 52519261 52519520 -48861001 + HAL1 LINE L1 1412 1646 -861 743 239 115 0 chr15 52519526 52519735 -48860786 + HAL1 LINE L1 1683 1915 -592 338 289 79 0 chr15 52519736 52519850 -48860671 + MIR SINE MIR 139 261 -1 2297 106 3 0 chr15 52520080 52520391 -48860130 - AluSq SINE Alu -1 312 1 180 0 0 0 chr15 52520585 52520605 -48859916 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 1155 183 18 18 chr15 52520752 52520971 -48859550 - MER20 DNA MER1_type 0 219 1 21607 149 44 17 chr15 52521058 52522629 -48857892 + L1MA3 LINE L1 16 1542 -6023 408 20 0 0 chr15 52522629 52522678 -48857843 + (CA)n Simple_repeat Simple_repeat 2 50 0 21607 149 44 17 chr15 52522678 52522830 -48857691 + L1MA3 LINE L1 1542 1688 -5877 2297 114 0 0 chr15 52522830 52523128 -48857393 - AluSx SINE Alu -12 300 3 21607 149 44 17 chr15 52523128 52525435 -48855086 + L1MA3 LINE L1 1688 3930 -3635 2127 79 28 7 chr15 52525435 52525725 -48854796 + AluSc SINE Alu 1 296 -13 21607 149 44 17 chr15 52525725 52528134 -48852387 + L1MA3 LINE L1 3930 6645 -920 4252 97 36 33 chr15 52528134 52528638 -48851883 + L1MA3 LINE L1 7021 7536 -188 1964 136 0 7 chr15 52528638 52528948 -48851573 - AluSx SINE Alu 0 313 6 4252 97 36 33 chr15 52528948 52529138 -48851383 + L1MA3 LINE L1 7536 7724 0 2883 166 75 9 chr15 52529145 52529871 -48850650 - L1MB8 LINE L1 -9 6169 5373 1942 127 3 3 chr15 52530934 52531280 -48849241 + AluSq SINE Alu 1 346 0 22 35 0 0 chr15 52531521 52531550 -48848971 + AT_rich Low_complexity Low_complexity 1 29 0 347 324 29 12 chr15 52531697 52531867 -48848654 - L1MC4a LINE L1 -1911 5897 5725 225 253 67 0 chr15 52531882 52531957 -48848564 - L1MC4a LINE L1 -2064 5744 5665 1099 171 35 5 chr15 52533224 52533423 -48847098 - MER2 DNA MER2_type -135 210 6 652 267 81 0 chr15 52534521 52534682 -48845839 - MER5A DNA MER1_type -12 177 4 369 280 84 0 chr15 52534767 52534910 -48845611 + MER103 DNA DNA 8 162 -4 1880 156 3 7 chr15 52535131 52535433 -48845088 - AluSx SINE Alu -11 301 1 42 71 0 0 chr15 52535836 52535920 -48844601 + AT_rich Low_complexity Low_complexity 1 84 0 2364 62 3 3 chr15 52535935 52536223 -48844298 - AluY SINE Alu -23 288 1 1793 136 23 36 chr15 52537582 52537891 -48842630 - AluJo SINE Alu -7 305 1 1075 190 5 5 chr15 52538670 52538875 -48841646 + MER3 DNA MER1_type 2 206 -3 929 97 8 0 chr15 52540013 52540147 -48840374 - L1MA2 LINE L1 0 6304 6170 29 0 0 0 chr15 52540858 52540887 -48839634 + AT_rich Low_complexity Low_complexity 1 29 0 289 219 106 32 chr15 52541459 52541582 -48838939 + L1MC5 LINE L1 7782 7913 -48 1010 158 0 0 chr15 52541799 52541977 -48838544 + AluSg/x SINE Alu 131 308 0 269 303 58 10 chr15 52542289 52542413 -48838108 + MIR SINE MIR 43 173 -62 2488 57 0 3 chr15 52542493 52542791 -48837730 + AluY SINE Alu 1 297 -14 207 0 0 0 chr15 52542796 52542819 -48837702 + (TA)n Simple_repeat Simple_repeat 1 23 0 1905 120 20 10 chr15 52542827 52543119 -48837402 + AluSq SINE Alu 1 295 -18 2117 135 0 0 chr15 52543249 52543552 -48836969 - AluSx SINE Alu -8 304 2 2308 87 7 0 chr15 52543774 52544072 -48836449 + AluSp SINE Alu 13 312 -1 382 230 184 70 chr15 52544254 52544641 -48835880 + HAL1 LINE L1 647 1077 -1430 2052 38 15 0 chr15 52544642 52544904 -48835617 - L1PA5 LINE L1 -807 5339 5074 7156 30 0 0 chr15 52544904 52545743 -48834778 + L1PA5 LINE L1 5312 6152 -2 26 23 0 23 chr15 52545743 52545764 -48834757 + AT_rich Low_complexity Low_complexity 1 21 -22 2122 124 10 0 chr15 52545764 52546071 -48834450 + AluSx SINE Alu 1 310 -2 26 23 0 23 chr15 52546071 52546093 -48834428 + AT_rich Low_complexity Low_complexity 21 43 0 525 238 56 12 chr15 52546109 52546269 -48834252 + HAL1 LINE L1 1127 1293 -1214 254 309 0 0 chr15 52547131 52547199 -48833322 - L2 LINE L2 0 3313 3246 466 248 161 25 chr15 52547484 52547645 -48832876 + MER5A DNA MER1_type 7 189 0 629 217 25 0 chr15 52547711 52547831 -48832690 + FLAM_A SINE Alu 1 123 -10 271 313 139 43 chr15 52549187 52549797 -48830724 + L2 LINE L2 1793 2461 -853 412 307 85 112 chr15 52549971 52550083 -48830438 + L2 LINE L2 2838 2951 -321 1191 156 38 5 chr15 52550083 52550295 -48830226 + MER20 DNA MER1_type 1 219 0 412 307 85 112 chr15 52550295 52550485 -48830036 + L2 LINE L2 2951 3127 -145 2509 34 3 0 chr15 52550485 52550778 -48829743 - AluY SINE Alu -17 294 1 412 307 85 112 chr15 52550778 52550920 -48829601 + L2 LINE L2 3127 3271 -1 21 89 0 0 chr15 52551392 52551448 -48829073 + AT_rich Low_complexity Low_complexity 1 56 0 1558 182 23 0 chr15 52558816 52559118 -48821403 + MLT2C2 LTR ERVL 1 309 -155 219 200 47 12 chr15 52559119 52559204 -48821317 + (TA)n Simple_repeat Simple_repeat 1 88 0 306 122 0 0 chr15 52559209 52559258 -48821263 + MLT2C2 LTR ERVL 366 414 0 373 243 40 81 chr15 52560064 52560212 -48820309 - MIR SINE MIR -46 216 75 1864 114 0 88 chr15 52560276 52560584 -48819937 - AluSx SINE Alu -13 299 19 258 320 83 0 chr15 52561005 52561161 -48819360 + L1ME3A LINE L1 5616 5784 -378 2024 155 0 0 chr15 52561316 52561613 -48818908 - AluSq SINE Alu -16 297 1 314 289 89 61 chr15 52561683 52561863 -48818658 + L1ME3A LINE L1 5963 6147 -23 1562 122 9 0 chr15 52561932 52562161 -48818360 + AluSg/x SINE Alu 81 311 -1 2058 129 0 3 chr15 52562316 52562611 -48817910 + AluSc SINE Alu 1 294 -15 2201 131 0 0 chr15 52563736 52564048 -48816473 + AluSx SINE Alu 1 312 0 294 117 44 73 chr15 52564926 52565063 -48815458 + (CATATA)n Simple_repeat Simple_repeat 4 136 0 1658 173 14 0 chr15 52565438 52565716 -48814805 + AluJb SINE Alu 1 282 -30 2149 129 0 7 chr15 52565748 52566058 -48814463 + AluSx SINE Alu 5 312 0 1449 161 66 8 chr15 52566266 52566509 -48814012 - AluJb SINE Alu -17 295 39 2051 102 0 7 chr15 52566987 52567262 -48813259 - AluSx SINE Alu -39 273 1 234 314 85 60 chr15 52567270 52567658 -48812863 + L2 LINE L2 2659 3059 -213 22 35 0 0 chr15 52567859 52567888 -48812633 + AT_rich Low_complexity Low_complexity 1 29 0 1489 165 11 11 chr15 52568275 52568554 -48811967 - L1PA15 LINE L1 0 6165 5887 22 0 0 0 chr15 52568564 52568586 -48811935 + AT_rich Low_complexity Low_complexity 1 22 0 369 272 64 8 chr15 52568755 52568990 -48811531 + HAL1 LINE L1 945 1192 -1315 230 136 45 0 chr15 52568996 52569040 -48811481 + MER105 DNA DNA 6 51 -153 369 240 0 52 chr15 52569052 52569148 -48811373 + MER58 DNA MER1_type 9 99 -242 470 186 10 0 chr15 52569162 52569259 -48811262 + MER58 DNA MER1_type 2320 2417 -3 661 182 34 0 chr15 52569261 52569409 -48811112 + MER105 DNA DNA 45 197 -7 366 289 104 44 chr15 52569413 52569559 -48810962 + HAL1 LINE L1 1198 1334 -1173 2248 141 25 0 chr15 52569559 52569914 -48810607 + THE1B LTR MaLR 1 364 0 366 289 104 44 chr15 52569914 52570151 -48810370 + HAL1 LINE L1 1334 1604 -903 1565 148 32 0 chr15 52570697 52570980 -48809541 - L1MB8 LINE L1 -6 6172 5881 2197 107 0 40 chr15 52570980 52571148 -48809373 + THE1C LTR MaLR 2 150 -225 7106 43 3 20 chr15 52571148 52572643 -48807878 + L1PA5 LINE L1 4670 6149 -5 2197 107 0 40 chr15 52572643 52572821 -48807700 + THE1C LTR MaLR 150 334 -41 2200 101 3 0 chr15 52572822 52573108 -48807413 + AluSq SINE Alu 1 287 -26 335 130 19 0 chr15 52573133 52573187 -48807334 + THE1C LTR MaLR 321 375 0 1121 132 56 0 chr15 52573187 52573400 -48807121 - L1MB8 LINE L1 -298 5886 5662 42 0 0 0 chr15 52573726 52573768 -48806753 + AT_rich Low_complexity Low_complexity 1 42 0 397 225 88 88 chr15 52573772 52573811 -48806710 - L1MC4a LINE L1 -1880 5928 5890 2289 121 3 0 chr15 52573811 52574118 -48806403 - AluSx SINE Alu -4 308 1 397 225 88 88 chr15 52574118 52574260 -48806261 - L1MC4a LINE L1 -1917 5891 5747 588 285 72 13 chr15 52574266 52574501 -48806020 + MLT1L LTR MaLR 39 287 -328 2339 103 0 3 chr15 52574516 52574816 -48805705 + AluSc SINE Alu 1 299 -10 238 302 170 19 chr15 52575192 52575298 -48805223 + L2 LINE L2 3116 3237 -35 2148 144 0 0 chr15 52575737 52576043 -48804478 - AluSq SINE Alu -7 306 1 2930 193 40 30 chr15 52576622 52577029 -48803492 + L1MB1 LINE L1 4490 4891 -1255 1995 131 26 26 chr15 52577029 52577334 -48803187 + AluSc SINE Alu 1 305 -4 2930 193 40 30 chr15 52577334 52577734 -48802787 + L1MB1 LINE L1 4891 5305 -841 1517 201 23 23 chr15 52577776 52578085 -48802436 + AluJb SINE Alu 3 311 -1 1761 168 70 22 chr15 52578099 52578457 -48802064 + THE1C LTR MaLR 1 375 0 2909 174 43 60 chr15 52578457 52579374 -48801147 + L1MB1 LINE L1 5297 6176 -2 366 161 32 0 chr15 52579431 52579524 -48800997 + CT-rich Low_complexity Low_complexity 2 97 0 822 230 62 44 chr15 52579546 52579772 -48800749 - AluJo SINE Alu -82 230 1 33 25 0 0 chr15 52579840 52579880 -48800641 + AT_rich Low_complexity Low_complexity 1 40 0 2309 243 98 20 chr15 52579943 52580514 -48800007 - L1M4 LINE L1 -2739 3407 2882 2038 136 3 29 chr15 52580514 52580823 -48799698 - AluSx SINE Alu -11 301 1 2309 243 98 20 chr15 52580823 52581284 -48799237 - L1M4 LINE L1 -3264 2882 2295 1921 170 120 8 chr15 52581287 52581670 -48798851 + MSTA LTR MaLR 3 428 0 6277 198 42 6 chr15 52581670 52582971 -48797550 + MSTA-int LTR MaLR 1 1348 -303 22649 106 8 13 chr15 52582972 52586537 -48793984 + L1PA5 LINE L1 13 3560 -2586 13075 41 5 0 chr15 52586537 52588913 -48791608 + L1PA5 LINE L1 3774 6153 -1 713 301 178 6 chr15 52589423 52589765 -48790756 - L2 LINE L2 -1279 2035 1635 201 74 0 0 chr15 52590545 52590572 -48789949 + (A)n Simple_repeat Simple_repeat 1 27 0 2244 80 0 21 chr15 52590997 52591313 -48789208 + AluY SINE Alu 1 310 0 482 222 203 57 chr15 52591862 52591934 -48788587 - MIR SINE MIR 0 262 202 2244 105 3 0 chr15 52591934 52592239 -48788282 - AluSx SINE Alu -6 306 1 482 222 203 57 chr15 52592239 52592378 -48788143 - MIR SINE MIR -60 202 20 2288 122 0 0 chr15 52592380 52592692 -48787829 - AluSx SINE Alu 0 312 1 1782 86 0 4 chr15 52592699 52592931 -48787590 - AluSc SINE Alu -39 270 40 254 352 86 32 chr15 52592962 52593368 -48787153 + L2 LINE L2 1798 2225 -1089 2233 116 3 0 chr15 52593481 52593774 -48786747 - AluSp SINE Alu -19 294 1 1476 132 40 158 chr15 52593882 52593926 -48786595 - L1MB1 LINE L1 0 6168 6120 357 82 0 0 chr15 52593926 52593975 -48786546 + (CACTG)n Simple_repeat Simple_repeat 4 52 0 1711 162 0 30 chr15 52593983 52594279 -48786242 - AluJb SINE Alu -24 288 2 1476 132 40 158 chr15 52594279 52594651 -48785870 - L1MB1 LINE L1 -55 6113 5699 522 221 0 0 chr15 52594651 52594755 -48785766 - U13 snRNA snRNA 0 104 1 2047 134 20 13 chr15 52594765 52595064 -48785457 - AluJb SINE Alu -11 301 1 1476 132 40 158 chr15 52595064 52595083 -48785438 - L1MB1 LINE L1 -479 5689 5772 407 18 0 0 chr15 52595083 52595138 -48785383 - L1MA3 LINE L1 0 6305 6251 1476 132 40 158 chr15 52595138 52595180 -48785341 - L1MB1 LINE L1 -395 5773 5728 * 3782 238 55 40 chr15 52595175 52596506 -48784015 - L1M4 LINE L1 -901 5245 3890 4705 44 5 0 chr15 52596506 52597077 -48783444 + L1PA6 LINE L1 5576 6149 -5 3782 238 55 40 chr15 52597077 52597154 -48783367 - L1M4 LINE L1 -2256 3890 3816 3161 240 63 41 chr15 52597144 52598416 -48782105 - L1MEc LINE L1 -2165 3915 2616 * 1393 235 135 5 chr15 52598442 52598842 -48781679 + MLT1E LTR MaLR 1 452 -141 1622 156 3 3 chr15 52598842 52599121 -48781400 - MER54A LTR ERVL 0 901 623 2091 143 42 29 chr15 52599121 52599658 -48780863 + MLT2A2 LTR ERVL 1 546 -8 3294 162 39 20 chr15 52599666 52600278 -48780243 - MER54A LTR ERVL -275 626 3 683 148 19 77 chr15 52600303 52600416 -48780105 + MLT1E LTR MaLR 448 552 -41 2183 85 4 0 chr15 52600416 52600719 -48779802 - AluY SINE Alu 0 304 1 683 148 19 77 chr15 52600719 52600759 -48779762 + MLT1E LTR MaLR 552 593 0 1446 275 70 56 chr15 52600768 52601394 -48779127 - L1MEc LINE L1 -3420 2660 2044 2253 123 0 0 chr15 52601394 52601694 -48778827 - AluSq SINE Alu -13 300 1 1446 275 70 56 chr15 52601694 52601734 -48778787 - L1MEc LINE L1 -4036 2044 2006 2077 123 23 0 chr15 52601734 52602035 -48778486 - AluSx SINE Alu -4 308 1 1446 275 70 56 chr15 52602035 52602079 -48778442 - L1MEc LINE L1 -4074 2006 1964 1518 166 0 0 chr15 52602079 52602320 -48778201 - AluJb SINE Alu -9 303 63 1446 275 70 56 chr15 52602320 52603239 -48777282 - L1MEc LINE L1 -4116 1964 1046 198 0 0 0 chr15 52603239 52603261 -48777260 + (TTG)n Simple_repeat Simple_repeat 2 23 0 1446 275 70 56 chr15 52603261 52603453 -48777068 - L1MEc LINE L1 -5034 1046 858 576 245 69 53 chr15 52603479 52603601 -48776920 - L1MEc LINE L1 -5378 692 573 457 75 12 12 chr15 52603601 52603681 -48776840 + (TG)n Simple_repeat Simple_repeat 2 81 0 576 245 69 53 chr15 52603681 52603693 -48776828 - L1MEc LINE L1 -5497 573 563 1826 184 83 32 chr15 52603693 52604101 -48776420 + MSTB1 LTR MaLR 3 431 -1 576 245 69 53 chr15 52604101 52604147 -48776374 - L1MEc LINE L1 -5507 563 519 1514 172 4 15 chr15 52604147 52604415 -48776106 - AluJb SINE Alu -10 302 38 576 245 69 53 chr15 52604415 52604477 -48776044 - L1MEc LINE L1 -5551 519 444 429 54 0 0 chr15 52604604 52604660 -48775861 + (TATG)n Simple_repeat Simple_repeat 2 57 0 772 111 0 0 chr15 52604660 52604759 -48775762 - AluSx SINE Alu -20 292 194 1060 113 0 7 chr15 52604760 52604902 -48775619 - AluSx SINE Alu -172 141 1 876 235 34 0 chr15 52604988 52605192 -48775329 - L1MEc LINE L1 -5853 217 7 31 92 0 0 chr15 52605553 52605640 -48774881 + AT_rich Low_complexity Low_complexity 1 87 0 2107 118 10 3 chr15 52605847 52606136 -48774385 - AluSx SINE Alu -21 291 1 493 263 44 67 chr15 52606226 52606391 -48774130 + L1MC4 LINE L1 7753 7909 -133 384 22 0 0 chr15 52606391 52606436 -48774085 + (TG)n Simple_repeat Simple_repeat 2 46 0 493 263 44 67 chr15 52606436 52606567 -48773954 + L1MC4 LINE L1 7909 8042 0 22 56 0 0 chr15 52606573 52606609 -48773912 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr15 52606635 52606664 -48773857 + AT_rich Low_complexity Low_complexity 1 29 0 1400 191 70 0 chr15 52606702 52606959 -48773562 + AluJo SINE Alu 14 288 -24 389 279 78 6 chr15 52606961 52607140 -48773381 + L1ME LINE L1 4462 4653 -1493 390 290 92 25 chr15 52607602 52607813 -48772708 + L1ME LINE L1 5514 5714 -456 * 20658 167 35 19 chr15 52607810 52610293 -48770228 + L1M1 LINE L1 12 2452 -5244 2220 118 0 0 chr15 52610293 52610589 -48769932 + AluSx SINE Alu 1 296 -16 20658 167 35 19 chr15 52610589 52610824 -48769697 + L1M1 LINE L1 2452 2682 -5014 216 0 0 0 chr15 52610824 52610848 -48769673 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 20658 167 35 19 chr15 52610848 52612207 -48768314 + L1M1 LINE L1 2682 4017 -3679 1301 185 43 46 chr15 52612207 52612510 -48768011 + AluJo SINE Alu 1 302 -10 20658 167 35 19 chr15 52612510 52613833 -48766688 + L1M1 LINE L1 4017 5316 -2380 2383 100 7 0 chr15 52613833 52614143 -48766378 - AluSx SINE Alu 0 312 1 20658 167 35 19 chr15 52614143 52615565 -48764956 + L1M1 LINE L1 5316 6953 -743 2249 85 3 16 chr15 52615578 52615883 -48764638 - AluY SINE Alu -10 301 1 2029 141 64 0 chr15 52616116 52616442 -48764079 + MER7A DNA MER2_type 2 346 0 418 192 15 92 chr15 52616503 52616633 -48763888 + L1MEd LINE L1 151 270 -5935 23 54 0 0 chr15 52616672 52616709 -48763812 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr15 52618008 52618032 -48762489 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr15 52618140 52618184 -48762337 + AT_rich Low_complexity Low_complexity 1 44 0 2943 3 0 0 chr15 52618290 52618602 -48761919 - AluYb8 SINE Alu -5 313 2 1816 98 35 105 chr15 52618868 52619183 -48761338 - AluSx SINE Alu -19 293 1 317 280 124 42 chr15 52619299 52619492 -48761029 + HAL1 LINE L1 586 794 -1713 * 624 294 5 5 chr15 52619489 52619683 -48760838 + HAL1 LINE L1 1700 1893 -614 237 83 0 0 chr15 52619730 52619766 -48760755 + (TG)n Simple_repeat Simple_repeat 2 37 0 2136 88 0 82 chr15 52619984 52620315 -48760206 - AluSx SINE Alu -8 304 1 738 208 113 0 chr15 52620619 52620787 -48759734 + MER5A DNA MER1_type 1 187 -2 2776 188 97 21 chr15 52621059 52621677 -48758844 + L1ME2 LINE L1 5481 6145 -19 294 269 12 54 chr15 52621696 52621790 -48758731 + L1MEd LINE L1 1623 1709 -4687 2384 81 0 7 chr15 52621790 52622086 -48758435 + AluSq SINE Alu 1 294 -19 294 269 12 54 chr15 52622086 52622158 -48758363 + L1MEd LINE L1 1709 1782 -4614 207 139 56 0 chr15 52622236 52622272 -48758249 + (CGTG)n Simple_repeat Simple_repeat 2 39 0 185 381 52 19 chr15 52622276 52622431 -48758090 + L2 LINE L2 2752 2911 -403 22 0 0 0 chr15 52622535 52622557 -48757964 + AT_rich Low_complexity Low_complexity 1 22 0 2152 135 3 0 chr15 52622564 52622861 -48757660 - AluSx SINE Alu -14 298 1 211 333 162 8 chr15 52622936 52623053 -48757468 + L2 LINE L2 3134 3268 -4 340 275 72 29 chr15 52623307 52623445 -48757076 + MIR SINE MIR 119 262 0 193 173 39 77 chr15 52624086 52624138 -48756383 + MIR3 SINE MIR 155 204 -4 3394 233 107 29 chr15 52624499 52624705 -48755816 + L1MC4 LINE L1 6463 6652 -1390 285 29 0 0 chr15 52624705 52624739 -48755782 + (CA)n Simple_repeat Simple_repeat 2 35 0 3394 233 107 29 chr15 52624739 52625531 -48754990 + L1MC4 LINE L1 6652 7548 -494 2494 70 0 19 chr15 52625531 52625845 -48754676 - AluY SINE Alu -3 308 1 3394 233 107 29 chr15 52625845 52625885 -48754636 + L1MC4 LINE L1 7548 7583 -459 6867 15 0 0 chr15 52625885 52626970 -48753551 - L1P1 LINE L1 -464 5691 4607 4218 19 2 0 chr15 52626960 52627437 -48753084 + L1HS LINE L1 5677 6154 -1 * 282 287 13 13 chr15 52627449 52627905 -48752616 + L1MD3 LINE L1 7578 8019 -19 2194 101 0 0 chr15 52627905 52628191 -48752330 + AluSx SINE Alu 1 286 -26 282 287 13 13 chr15 52628191 52628211 -48752310 + L1MD3 LINE L1 8019 8038 0 324 283 62 0 chr15 52628632 52628745 -48751776 - LTR67 LTR ERVL -4 553 434 3233 127 6 30 chr15 52628770 52629273 -48751248 + MER1A DNA MER1_type 37 527 -2 452 260 0 0 chr15 52630381 52630477 -48750044 + L2 LINE L2 3175 3270 -2 266 138 17 0 chr15 52632564 52632622 -48747899 + GA-rich Low_complexity Low_complexity 1 59 0 241 200 25 58 chr15 52632714 52632834 -48747687 + (CGGGG)n Simple_repeat Simple_repeat 4 119 0 2003 120 3 3 chr15 52633724 52634008 -48746513 + AluSx SINE Alu 1 284 -28 568 321 29 29 chr15 52635785 52636031 -48744490 - MLT1J LTR MaLR -40 471 226 2074 222 113 9 chr15 52636204 52636397 -48744124 + L1MC4 LINE L1 6463 6635 -1407 339 25 0 0 chr15 52636397 52636437 -48744084 + (CA)n Simple_repeat Simple_repeat 1 40 0 2074 222 113 9 chr15 52636437 52636811 -48743710 + L1MC4 LINE L1 6635 7089 -953 754 219 306 0 chr15 52636813 52637110 -48743411 + L1MC4 LINE L1 7240 7627 -415 358 118 118 59 chr15 52637113 52637198 -48743323 - MLT2B1 LTR ERVL 0 520 431 1737 154 0 4 chr15 52637205 52637464 -48743057 - AluSx SINE Alu -52 260 3 266 310 152 15 chr15 52637685 52637882 -48742639 + L2 LINE L2 2241 2464 -850 290 333 56 77 chr15 52638081 52638131 -48742390 - LTR16C LTR ERVL -32 459 409 943 229 50 5 chr15 52638131 52638332 -48742189 - MER63A DNA MER1_type 0 210 1 290 333 56 77 chr15 52638332 52638566 -48741955 - LTR16C LTR ERVL -82 409 181 896 291 67 46 chr15 52638916 52639397 -48741124 - ERVL LTR ERVL -399 5365 4875 881 143 0 0 chr15 52639974 52640100 -48740421 - AluSg/x SINE Alu -16 294 169 667 116 11 0 chr15 52640745 52640840 -48739681 + MSTD LTR MaLR 1 96 -300 1283 156 18 53 chr15 52640842 52641067 -48739454 + AluJo SINE Alu 1 217 -95 264 130 74 19 chr15 52641067 52641121 -48739400 + MSTB2 LTR MaLR 390 446 -11 1922 118 8 0 chr15 52641160 52641422 -48739099 + AluSx SINE Alu 3 266 -46 1307 90 6 6 chr15 52641422 52641589 -48738932 - AluSc SINE Alu -142 167 1 2829 3 0 0 chr15 52641928 52642228 -48738293 - AluYa5 SINE Alu -11 300 1 27 0 0 0 chr15 52642233 52642260 -48738261 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr15 52643070 52643104 -48737417 + AT_rich Low_complexity Low_complexity 1 34 0 185 94 31 0 chr15 52646147 52646179 -48734342 + (CGG)n Simple_repeat Simple_repeat 2 34 0 254 182 0 0 chr15 52646179 52646234 -48734287 + (CTG)n Simple_repeat Simple_repeat 2 56 0 585 110 0 0 chr15 52646234 52646343 -48734178 + (CGG)n Simple_repeat Simple_repeat 3 111 0 2265 92 0 3 chr15 52646707 52646989 -48733532 + AluSg SINE Alu 11 291 -19 2025 136 3 7 chr15 52647268 52647570 -48732951 - AluSx SINE Alu -8 304 4 1129 230 75 0 chr15 52647588 52647866 -48732655 - L1ME3A LINE L1 -13 6157 5859 2597 163 36 13 chr15 52647870 52648317 -48732204 - LTR32 LTR ERVL 0 471 15 1784 215 75 24 chr15 52648324 52648859 -48731662 - L1ME3A LINE L1 -317 5849 5275 1856 147 60 0 chr15 52648888 52649173 -48731348 + AluJb SINE Alu 3 304 -8 2490 91 6 3 chr15 52649436 52649765 -48730756 + THE1C LTR MaLR 1 330 -45 2298 85 7 0 chr15 52649765 52650058 -48730463 + AluSq SINE Alu 1 295 -18 1828 72 0 5 chr15 52650075 52650298 -48730223 - AluSc SINE Alu -87 222 1 27 0 0 0 chr15 52650308 52650335 -48730186 + AT_rich Low_complexity Low_complexity 1 27 0 2517 58 0 13 chr15 52650919 52651227 -48729294 + AluY SINE Alu 1 304 -7 1716 182 17 10 chr15 52651616 52651913 -48728608 + AluJb SINE Alu 1 299 -13 2939 159 116 16 chr15 52652000 52652560 -48727961 - LTR26E LTR ERV1 -2 620 5 2932 73 3 11 chr15 52652560 52652917 -48727604 - THE1A LTR MaLR 0 355 1 12818 77 6 6 chr15 52652917 52654497 -48726024 - THE1A-int LTR MaLR 0 1580 1 2890 82 3 3 chr15 52654497 52654852 -48725669 - THE1A LTR MaLR 0 355 1 2471 161 157 75 chr15 52655067 52655738 -48724783 - LTR8A LTR ERV1 -1 726 1 633 282 71 34 chr15 52655913 52656179 -48724342 - MLT1L LTR MaLR -339 276 1 467 345 80 4 chr15 52656206 52656432 -48724089 + L2 LINE L2 2841 3083 -189 3004 179 34 20 chr15 52656466 52657023 -48723498 + MER82 DNA MER2_type 1 565 -88 1208 227 126 64 chr15 52657023 52657345 -48723176 + LTR48 LTR ERV1 1 302 -342 1574 175 13 20 chr15 52657345 52657648 -48722873 - AluJb SINE Alu -11 301 1 1208 227 126 64 chr15 52657648 52657967 -48722554 + LTR48 LTR ERV1 302 629 -15 422 213 0 0 chr15 52657989 52658064 -48722457 + MER82 DNA MER2_type 570 644 -9 2122 181 84 73 chr15 52658064 52658612 -48721909 + MLT2B3 LTR ERVL 1 554 0 10465 183 40 17 chr15 52659103 52660560 -48719961 - L1PA16 LINE L1 -135 6031 4608 1868 135 85 0 chr15 52660560 52660841 -48719680 - AluSx SINE Alu -5 307 3 10465 183 40 17 chr15 52660841 52662184 -48718337 - L1PA16 LINE L1 -1558 4608 3136 1966 136 0 30 chr15 52662184 52662479 -48718042 - AluSx SINE Alu -17 295 10 10465 183 40 17 chr15 52662479 52662883 -48717638 - L1PA16 LINE L1 -3030 3136 2743 7176 111 32 16 chr15 52663227 52664279 -48716242 + MER11C LTR ERVK 3 1071 0 1241 279 72 65 chr15 52664356 52664614 -48715907 - L1M4 LINE L1 -1371 4775 4520 2213 118 0 7 chr15 52664614 52664911 -48715610 + AluSx SINE Alu 2 296 -16 1241 279 72 65 chr15 52664911 52665458 -48715063 - L1M4 LINE L1 -1626 4520 3964 2391 71 0 14 chr15 52665521 52665818 -48714703 - AluY SINE Alu -18 293 1 21 0 0 0 chr15 52665818 52665839 -48714682 + AT_rich Low_complexity Low_complexity 1 21 0 353 228 118 37 chr15 52665949 52666085 -48714436 - L1M4 LINE L1 -2228 3918 3772 1038 230 161 50 chr15 52666087 52666529 -48713992 + L2 LINE L2 2479 2988 -325 309 311 8 0 chr15 52666556 52666675 -48713846 + (TA)n Simple_repeat Simple_repeat 1 120 0 754 259 85 49 chr15 52666676 52666981 -48713540 + L2 LINE L2 2997 3312 -1 1084 179 0 0 chr15 52667177 52667345 -48713176 - AluJb SINE Alu -13 299 132 1080 187 34 14 chr15 52667883 52668092 -48712429 + AluJo SINE Alu 87 299 -13 1668 181 25 16 chr15 52668618 52668933 -48711588 - 7SLRNA srpRNA srpRNA -2 318 1 435 257 86 0 chr15 52669466 52669571 -48710950 + MER82 DNA MER2_type 540 653 0 638 279 84 37 chr15 52669668 52669966 -48710555 + L2 LINE L2 1465 1776 -1538 23 33 0 0 chr15 52670114 52670144 -48710377 + AT_rich Low_complexity Low_complexity 1 30 0 235 325 113 0 chr15 52670270 52670464 -48710057 - L1MC4a LINE L1 -1731 6077 5862 270 0 0 0 chr15 52670487 52670517 -48710004 + (TG)n Simple_repeat Simple_repeat 2 31 0 2429 167 71 29 chr15 52670558 52670667 -48709854 + LTR64 LTR ERVK 3 106 -407 2143 130 0 0 chr15 52670667 52670974 -48709547 - AluSx SINE Alu -5 307 1 2429 167 71 29 chr15 52670974 52671354 -48709167 + LTR64 LTR ERVK 106 513 0 1950 158 7 0 chr15 52671922 52672220 -48708301 - AluJb SINE Alu -9 303 4 2003 106 33 0 chr15 52672803 52673101 -48707420 + AluSx SINE Alu 1 307 0 415 162 247 19 chr15 52673136 52673290 -48707231 - MER53 DNA DNA 0 189 1 2643 201 36 4 chr15 52673809 52674364 -48706157 + MER90 LTR ERV1 1 614 0 2434 151 34 80 chr15 52674397 52674874 -48705647 - LTR32 LTR ERVL 0 471 17 194 281 18 0 chr15 52676085 52676142 -48704379 + MIR3 SINE MIR 147 204 -4 266 208 135 10 chr15 52676265 52676361 -48704160 + L1ME4a LINE L1 5392 5499 -622 494 238 133 95 chr15 52676381 52676619 -48703902 + L1ME4a LINE L1 5551 5779 -342 684 221 41 17 chr15 52676619 52676791 -48703730 - MER5B DNA MER1_type -1 177 2 494 238 133 95 chr15 52676791 52676894 -48703627 + L1ME4a LINE L1 5779 5912 -209 3041 117 19 0 chr15 52676894 52677320 -48703201 + MER57B LTR ERV1 1 434 0 494 238 133 95 chr15 52677320 52677377 -48703144 + L1ME4a LINE L1 5912 5965 -156 2020 139 180 14 chr15 52677603 52677970 -48702551 - MSTA LTR MaLR 0 428 1 813 199 7 0 chr15 52678257 52678393 -48702128 + AluJo SINE Alu 120 256 -56 342 0 0 0 chr15 52678428 52678466 -48702055 + (TG)n Simple_repeat Simple_repeat 2 39 0 1771 153 7 33 chr15 52678962 52679269 -48701252 - AluJb SINE Alu -12 300 2 352 234 188 16 chr15 52679843 52679971 -48700550 - MIR SINE MIR -32 230 81 1576 159 4 19 chr15 52680433 52680691 -48699830 + AluJo SINE Alu 44 297 -15 268 279 0 0 chr15 52681462 52681523 -48698998 + HAL1 LINE L1 258 318 -2189 237 128 0 0 chr15 52681523 52681570 -48698951 + (TG)n Simple_repeat Simple_repeat 2 48 0 2560 147 10 76 chr15 52681571 52682060 -48698461 + LTR32 LTR ERVL 15 471 0 309 287 69 0 chr15 52682082 52682183 -48698338 + HAL1 LINE L1 341 448 -2059 4330 135 13 5 chr15 52682393 52683021 -48697500 + MER51A LTR ERV1 1 633 -1 727 246 135 30 chr15 52683094 52683456 -48697065 + HAL1 LINE L1 2097 2496 -11 395 183 0 0 chr15 52684698 52684769 -48695752 - MSTD LTR MaLR 0 396 326 11202 111 17 7 chr15 52684825 52686442 -48694079 - Tigger1 DNA MER2_type -32 2386 754 2372 92 3 3 chr15 52687925 52688229 -48692292 + AluSc SINE Alu 1 304 -5 277 134 15 15 chr15 52688299 52688366 -48692155 + (TG)n Simple_repeat Simple_repeat 2 68 0 273 282 59 29 chr15 52689402 52689572 -48690949 + LTR33A LTR ERVL 9 183 -340 438 234 193 0 chr15 52689625 52689796 -48690725 + LTR33A LTR ERVL 317 520 -3 2085 111 14 0 chr15 52689823 52690111 -48690410 - AluSx SINE Alu -20 292 1 717 277 31 71 chr15 52690664 52691018 -48689503 - MER102b DNA MER1_type 0 341 2 284 295 19 29 chr15 52691106 52691211 -48689310 - MARNA DNA Mariner -170 416 313 1060 200 0 0 chr15 52692141 52692316 -48688205 + FAM SINE Alu 1 175 0 2169 146 18 15 chr15 52692341 52692677 -48687844 + MER1B DNA MER1_type 1 337 -2 2473 94 3 0 chr15 52692781 52693090 -48687431 - AluSx SINE Alu -2 310 1 2590 52 0 3 chr15 52693497 52693803 -48686718 - AluY SINE Alu -6 305 1 535 122 14 0 chr15 52693944 52694018 -48686503 - MER1B DNA MER1_type 0 329 255 1775 120 3 35 chr15 52694048 52694331 -48686190 - MER1B DNA MER1_type -65 274 1 759 279 56 89 chr15 52694444 52694822 -48685699 + MLT1H LTR MaLR 14 439 -110 329 275 0 12 chr15 52694844 52694924 -48685597 - MLT1H LTR MaLR -393 156 78 981 245 158 44 chr15 52694971 52695423 -48685098 - MLT1H1 LTR MaLR -8 541 1 371 274 74 122 chr15 52695446 52695782 -48684739 - MLT1H1-int LTR MaLR -24 1347 1028 272 347 53 12 chr15 52696328 52696536 -48683985 - MLT1H1-int LTR MaLR -834 537 314 2266 57 14 10 chr15 52696596 52696892 -48683629 + AluY SINE Alu 1 297 -14 1839 148 0 10 chr15 52697004 52697302 -48683219 - AluSx SINE Alu -17 295 1 213 121 0 0 chr15 52697319 52697352 -48683169 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 556 250 55 47 chr15 52697488 52697724 -48682797 + L1MC5 LINE L1 7713 7950 -11 4358 178 10 48 chr15 52698892 52699639 -48680882 + L1MC1 LINE L1 24 737 -5689 1951 125 13 26 chr15 52699639 52699942 -48680579 - AluY SINE Alu -10 301 3 4358 178 10 48 chr15 52699942 52700026 -48680495 + L1MC1 LINE L1 737 823 -5603 889 174 174 5 chr15 52700026 52700210 -48680311 + AluJb SINE Alu 84 298 -14 2197 126 0 0 chr15 52700210 52700503 -48680018 + AluSx SINE Alu 1 293 -19 7305 191 47 58 chr15 52700503 52701349 -48679172 + L1MC1 LINE L1 820 1674 -4752 2355 103 0 0 chr15 52701349 52701659 -48678862 + AluSg SINE Alu 1 310 0 7305 191 47 58 chr15 52701659 52702069 -48678452 + L1MC1 LINE L1 1674 2087 -4339 1380 203 105 0 chr15 52702069 52702335 -48678186 + AluJb SINE Alu 1 294 -18 7305 191 47 58 chr15 52702335 52703443 -48677078 + L1MC1 LINE L1 2087 3206 -3220 1529 167 62 11 chr15 52703443 52703718 -48676803 + AluJo SINE Alu 1 289 -23 7305 191 47 58 chr15 52703718 52704034 -48676487 + L1MC1 LINE L1 3206 3524 -2902 799 174 8 15 chr15 52704034 52704166 -48676355 - FLAM_C SINE Alu -2 131 1 7305 191 47 58 chr15 52704166 52705117 -48675404 + L1MC1 LINE L1 3524 4415 -2011 3645 43 9 2 chr15 52705089 52705530 -48674991 - L1PA5 LINE L1 0 6154 5711 * 15478 26 2 0 chr15 52705091 52707691 -48672830 - L1PA5 LINE L1 -2 6152 3546 6983 54 13 0 chr15 52707691 52709042 -48671479 - L1P2 LINE L1 -368 5786 4424 3133 223 22 87 chr15 52709042 52710277 -48670244 + L1MC1 LINE L1 4377 5531 -895 2843 7 0 0 chr15 52710588 52710895 -48669626 - AluYa5 SINE Alu -4 307 1 237 179 0 18 chr15 52711475 52711531 -48668990 + A-rich Low_complexity Low_complexity 4 58 0 2042 122 0 7 chr15 52712022 52712338 -48668183 - AluSx SINE Alu 0 314 1 6226 123 10 35 chr15 52713050 52713141 -48667380 + L1MC1 LINE L1 5535 5627 -986 1641 172 31 17 chr15 52713141 52713431 -48667090 + AluJb SINE Alu 1 294 -18 6226 123 10 35 chr15 52713431 52714441 -48666080 + L1MC1 LINE L1 5627 6609 -4 2219 100 7 23 chr15 52714484 52714793 -48665728 - AluSx SINE Alu -8 304 1 249 108 0 0 chr15 52714854 52714891 -48665630 + (A)n Simple_repeat Simple_repeat 1 37 0 24 0 0 0 chr15 52715601 52715625 -48664896 + AT_rich Low_complexity Low_complexity 1 24 0 192 345 129 9 chr15 52716052 52716168 -48664353 - L2 LINE L2 0 3272 3143 183 342 26 35 chr15 52716291 52716405 -48664116 - L2 LINE L2 -327 2986 2874 229 299 0 26 chr15 52716487 52716564 -48663957 + MLT1K LTR MaLR 40 114 -474 558 252 103 79 chr15 52716654 52717420 -48663101 - L1MC5 LINE L1 -36 7925 7179 952 151 27 0 chr15 52717420 52717605 -48662916 - L1MA4 LINE L1 -6 6294 6105 1815 181 0 13 chr15 52717605 52717909 -48662612 - AluJo SINE Alu -12 300 1 558 252 103 79 chr15 52717909 52717991 -48662530 - L1MC5 LINE L1 -781 7180 7055 306 310 62 8 chr15 52718065 52718194 -48662327 - L1ME3A LINE L1 -28 6142 6007 2220 103 0 0 chr15 52718325 52718617 -48661904 - AluY SINE Alu -19 292 1 347 178 136 17 chr15 52718626 52718744 -48661777 - L1MC5 LINE L1 -440 7521 7390 1871 110 4 8 chr15 52718756 52719036 -48661485 - AluSx SINE Alu 0 306 28 1041 171 47 85 chr15 52719036 52719407 -48661114 - L1MC5 LINE L1 -827 7134 6797 999 195 54 36 chr15 52719837 52719996 -48660525 - L1MC5 LINE L1 -2272 5536 5368 2209 167 39 112 chr15 52719996 52720594 -48659927 - MER41C LTR ERV1 0 554 1 999 195 54 36 chr15 52720594 52720711 -48659810 - L1MC5 LINE L1 -2440 5368 5255 234 320 51 0 chr15 52720873 52721029 -48659492 - L1MC5 LINE L1 -1458 4688 4525 2193 119 0 0 chr15 52721087 52721382 -48659139 - AluSx SINE Alu -17 295 1 22 0 0 0 chr15 52721406 52721428 -48659093 + AT_rich Low_complexity Low_complexity 1 22 0 4576 69 0 0 chr15 52721487 52722067 -48658454 + L1PA5 LINE L1 5574 6153 -1 2105 101 49 0 chr15 52722362 52722648 -48657873 - AluSq SINE Alu -13 300 1 275 383 81 11 chr15 52722722 52723007 -48657514 - L2 LINE L2 -1001 2313 2009 1280 179 81 54 chr15 52723733 52723890 -48656631 - MER2 DNA MER2_type 0 344 193 2228 115 0 0 chr15 52723890 52724186 -48656335 - AluSx SINE Alu -16 296 1 1280 179 81 54 chr15 52724186 52724363 -48656158 - MER2 DNA MER2_type -151 193 1 299 293 104 37 chr15 52724854 52725018 -48655503 - L3 LINE CR1 -876 701 527 208 234 79 22 chr15 52725007 52725089 -48655432 - MIR SINE MIR -135 73 7 * 1429 229 93 20 chr15 52725319 52725761 -48654760 - MLT1J LTR MaLR -37 474 1 182 304 209 0 chr15 52726279 52726394 -48654127 + MIR SINE MIR 3 141 -121 26 50 0 0 chr15 52726681 52726721 -48653800 + AT_rich Low_complexity Low_complexity 1 40 0 576 263 127 15 chr15 52727313 52727572 -48652949 + MLT1L LTR MaLR 316 603 -12 192 77 0 0 chr15 52732888 52732914 -48647607 + (TTGGGG)n Simple_repeat Simple_repeat 6 31 0 2029 120 36 17 chr15 52735525 52735826 -48644695 + AluSx SINE Alu 1 307 -5 25 0 0 0 chr15 52737157 52737182 -48643339 + AT_rich Low_complexity Low_complexity 1 25 0 305 289 42 30 chr15 52737688 52737854 -48642667 + MARNA DNA Mariner 327 494 -92 540 283 131 11 chr15 52738136 52738327 -48642194 + MIR SINE MIR 1 214 -48 22 35 0 0 chr15 52739027 52739056 -48641465 + AT_rich Low_complexity Low_complexity 1 29 0 206 266 16 0 chr15 52739068 52739132 -48641389 + (TA)n Simple_repeat Simple_repeat 1 65 0 216 0 0 0 chr15 52741184 52741208 -48639313 + (T)n Simple_repeat Simple_repeat 1 24 0 239 250 135 29 chr15 52742147 52742251 -48638270 - MIR3 SINE MIR -6 202 88 316 352 184 31 chr15 52743158 52743479 -48637042 + L2 LINE L2 2913 3282 -31 1084 207 59 31 chr15 52743777 52744220 -48636301 - LTR56 LTR ERV1 -2 441 9 187 389 80 23 chr15 52744566 52744741 -48635780 - L3 LINE CR1 -13 1564 1380 2474 61 0 0 chr15 52745086 52745380 -48635141 + AluY SINE Alu 17 310 -1 491 216 52 0 chr15 52745632 52745748 -48634773 - MIR SINE MIR -34 228 107 364 95 48 0 chr15 52745817 52745880 -48634641 + L1P LINE L1 3261 3326 -2820 7629 100 17 2 chr15 52745881 52747074 -48633447 + L1P LINE L1 3259 4469 -1677 5846 67 18 43 chr15 52747075 52748141 -48632380 + SVA Other Other 2 866 -520 1204 100 26 112 chr15 52748172 52748592 -48631929 + SVA Other Other 483 866 -520 189 359 0 0 chr15 52748696 52748735 -48631786 + T-rich Low_complexity Low_complexity 1 39 0 3615 174 24 1 chr15 52748851 52749562 -48630959 - L1 LINE L1 -1022 5124 4393 414 39 0 0 chr15 52749562 52749614 -48630907 + (TG)n Simple_repeat Simple_repeat 1 52 0 3615 174 24 1 chr15 52749614 52749661 -48630860 - L1 LINE L1 -1753 4393 4349 22 0 0 0 chr15 52750063 52750085 -48630436 + AT_rich Low_complexity Low_complexity 1 22 0 6560 81 16 8 chr15 52750141 52751407 -48629114 - L1PA10 LINE L1 0 6168 4899 213 39 0 0 chr15 52751414 52751440 -48629081 + (T)n Simple_repeat Simple_repeat 1 26 0 289 252 130 17 chr15 52751443 52751558 -48628963 + MER112 DNA MER1_type 133 260 0 338 266 25 13 chr15 52751599 52751678 -48628843 + MIR3 SINE MIR 81 160 -48 2258 110 0 0 chr15 52751684 52751985 -48628536 - AluSg SINE Alu -8 302 2 434 221 14 131 chr15 52751988 52752133 -48628388 - MER5B DNA MER1_type -1 177 50 6535 72 7 28 chr15 52752146 52753055 -48627466 - SVA Other Other 0 1386 497 21 36 0 0 chr15 52753116 52753144 -48627377 + GC_rich Low_complexity Low_complexity 1 28 0 541 266 164 20 chr15 52753834 52754078 -48626443 + L1M4 LINE L1 105 383 -6159 5239 221 99 23 chr15 52754087 52755147 -48625374 + L1M4 LINE L1 2564 3543 -3101 2506 48 3 0 chr15 52755147 52755442 -48625079 - AluY SINE Alu -15 296 1 5239 221 99 23 chr15 52755442 52756661 -48623860 + L1M4 LINE L1 3543 5034 -1610 1998 138 3 3 chr15 52756693 52756989 -48623532 + AluSx SINE Alu 3 298 -14 613 285 133 51 chr15 52757865 52758458 -48622063 + L1ME4a LINE L1 3204 3845 -2799 767 289 53 31 chr15 52758459 52758869 -48621652 + L1ME4a LINE L1 3914 4335 -2309 1697 153 70 0 chr15 52758869 52759156 -48621365 - AluJo SINE Alu -5 307 1 767 289 53 31 chr15 52759156 52759278 -48621243 + L1ME4a LINE L1 4335 4453 -2191 305 312 52 48 chr15 52759773 52760004 -48620517 + L1ME4a LINE L1 5094 5325 -1319 28 0 0 0 chr15 52760157 52760185 -48620336 + AT_rich Low_complexity Low_complexity 1 28 0 330 289 111 26 chr15 52760528 52760718 -48619803 + L1ME4a LINE L1 6392 6597 -22 1995 136 3 23 chr15 52761363 52761722 -48618799 + AluSx SINE Alu 1 353 0 24 0 0 0 chr15 52761932 52761956 -48618565 + AT_rich Low_complexity Low_complexity 1 24 0 2109 110 3 7 chr15 52762242 52762543 -48617978 - AluSx SINE Alu -3 309 10 545 221 24 0 chr15 52762593 52762720 -48617801 + L1MB5 LINE L1 5905 6034 -140 2325 79 0 16 chr15 52762898 52763201 -48617320 + AluY SINE Alu 1 298 -13 282 284 12 12 chr15 52763456 52763537 -48616984 - MIR3 SINE MIR -31 177 97 498 221 8 8 chr15 52763833 52763955 -48616566 + L1ME3A LINE L1 5318 5439 -731 1031 281 13 50 chr15 52763966 52764430 -48616091 + L1ME3A LINE L1 5741 6166 -4 3330 140 58 3 chr15 52764669 52765255 -48615266 - L1MA5A LINE L1 -70 6227 5610 207 0 0 0 chr15 52765256 52765279 -48615242 + (TCTA)n Simple_repeat Simple_repeat 1 23 0 7470 140 20 11 chr15 52765292 52766736 -48613785 - L1MA3 LINE L1 -5 7719 6244 2215 125 0 0 chr15 52766736 52767048 -48613473 + AluSx SINE Alu 1 312 0 7470 140 20 11 chr15 52767048 52767970 -48612551 - L1MA3 LINE L1 -1480 6244 5332 * 20301 128 35 29 chr15 52767965 52771367 -48609154 - L1MA3 LINE L1 -4134 3431 11 681 133 70 28 chr15 52771350 52771383 -48609138 - L1MA5A LINE L1 -681 5616 5586 * 2398 77 0 0 chr15 52771383 52771680 -48608841 + AluY SINE Alu 2 298 -13 681 133 70 28 chr15 52771680 52771789 -48608732 - L1MA5A LINE L1 -711 5586 5468 42515 35 25 1 chr15 52771916 52777926 -48602595 - L1PA2 LINE L1 0 6155 1 1080 173 41 25 chr15 52778446 52778570 -48601951 + AluJb SINE Alu 86 216 -97 183 80 0 0 chr15 52778570 52778595 -48601926 + (TGGGGG)n Simple_repeat Simple_repeat 1 25 0 1080 173 41 25 chr15 52778595 52778695 -48601826 + AluJb SINE Alu 216 313 0 299 170 150 40 chr15 52778697 52778797 -48601724 - MIR3 SINE MIR -31 177 67 210 71 0 0 chr15 52778954 52778982 -48601539 + (TA)n Simple_repeat Simple_repeat 2 29 0 356 260 83 0 chr15 52778990 52779086 -48601435 + L2 LINE L2 3169 3272 0 194 204 37 37 chr15 52779918 52779972 -48600549 - L3 LINE CR1 -9 1568 1515 230 136 23 0 chr15 52780585 52780629 -48599892 + (TA)n Simple_repeat Simple_repeat 1 45 0 225 179 0 0 chr15 52780632 52780688 -48599833 - L1MC4 LINE L1 -1339 6703 6648 1308 164 47 60 chr15 52783390 52783689 -48596832 - AluJo SINE Alu -8 304 10 1676 145 151 0 chr15 52784548 52784872 -48595649 + L1MB5 LINE L1 5802 6174 0 2282 92 0 0 chr15 52784877 52785171 -48595350 - AluY SINE Alu -17 294 1 233 196 0 22 chr15 52785989 52786035 -48594486 + MLT1J2 LTR MaLR 67 111 -339 1689 70 0 9 chr15 52786098 52786311 -48594210 + AluY SINE Alu 1 211 -100 30820 102 29 62 chr15 52786411 52792748 -48587773 + L1PA7 LINE L1 39 6151 -3 24 53 0 0 chr15 52793241 52793279 -48587242 + AT_rich Low_complexity Low_complexity 1 38 0 526 301 99 37 chr15 52793407 52793823 -48586698 - L1MC/D LINE L1 -2005 5803 5355 964 214 0 5 chr15 52793823 52794010 -48586511 - MER5A DNA MER1_type -1 188 3 526 301 99 37 chr15 52794010 52794048 -48586473 - L1MC/D LINE L1 -2453 5355 5321 633 328 10 0 chr15 52794075 52794386 -48586135 - L1MC/D LINE L1 -881 5265 4952 2291 82 7 0 chr15 52794562 52794853 -48585668 - AluSx SINE Alu -19 293 1 359 322 50 8 chr15 52795147 52795268 -48585253 + MIR SINE MIR 2 127 -135 504 127 0 38 chr15 52795478 52795557 -48584964 - AluJ/FRAM SINE Alu -21 291 216 1170 179 30 5 chr15 52795603 52795804 -48584717 + AluJb SINE Alu 89 294 -18 2397 176 4 26 chr15 52795824 52796285 -48584236 - L1MA7 LINE L1 -152 6139 5689 23 54 0 0 chr15 52799999 52800036 -48580485 + AT_rich Low_complexity Low_complexity 1 37 0 252 271 133 60 chr15 52800493 52800659 -48579862 - L2 LINE L2 -111 3202 3025 665 285 83 32 chr15 52801001 52801254 -48579267 - Charlie8 DNA MER1_type -2141 276 11 1994 133 13 32 chr15 52801903 52802218 -48578303 - MER1B DNA MER1_type 0 339 31 1706 157 25 4 chr15 52802896 52803170 -48577351 - AluJo SINE Alu -32 280 1 632 187 107 20 chr15 52803729 52803879 -48576642 - FRAM SINE Alu -15 161 1 1509 146 4 48 chr15 52804032 52804300 -48576221 + AluJo SINE Alu 40 295 -17 683 268 78 17 chr15 52805015 52805246 -48575275 + MIR SINE MIR 5 249 -13 283 261 176 48 chr15 52805340 52805528 -48574993 - L2 LINE L2 -8 3305 3094 308 265 86 101 chr15 52805631 52806038 -48574483 + MLT1J LTR MaLR 109 509 -2 331 309 47 3 chr15 52806038 52806189 -48574332 - L2 LINE L2 -225 3047 2892 365 316 163 5 chr15 52806455 52806664 -48573857 - MIR SINE MIR -19 243 2 222 37 0 0 chr15 52806672 52806699 -48573822 + (T)n Simple_repeat Simple_repeat 1 27 0 302 304 0 13 chr15 52807251 52807330 -48573191 - L2 LINE L2 -203 3069 2992 801 165 69 69 chr15 52807357 52807575 -48572946 - MER20 DNA MER1_type -1 218 1 1101 185 9 24 chr15 52807583 52807794 -48572727 - MER3 DNA MER1_type 0 209 2 398 354 203 8 chr15 52807851 52808235 -48572286 - L2 LINE L2 -455 2859 2401 1171 241 84 40 chr15 52808287 52808537 -48571984 + MLT1D LTR MaLR 85 361 -144 219 36 0 0 chr15 52808537 52808565 -48571956 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1171 241 84 40 chr15 52808565 52808717 -48571804 + MLT1D LTR MaLR 361 505 0 889 315 111 58 chr15 52808733 52809776 -48570745 - L2 LINE L2 -941 2373 1276 397 332 92 7 chr15 52809831 52810102 -48570419 + L1MEc LINE L1 35 328 -6068 358 272 13 58 chr15 52810310 52810473 -48570048 + L1MEc LINE L1 726 878 -5518 1802 135 3 43 chr15 52810473 52810776 -48569745 + AluSq SINE Alu 1 291 -22 358 272 13 58 chr15 52810776 52810836 -48569685 + L1MEc LINE L1 878 939 -5457 2207 94 0 0 chr15 52810984 52811261 -48569260 + AluSq SINE Alu 15 291 -22 288 238 0 50 chr15 52811261 52811362 -48569159 + L1MEc LINE L1 1018 1113 -5283 1977 126 0 26 chr15 52811434 52811736 -48568785 + AluSc SINE Alu 1 294 -15 2574 231 125 18 chr15 52811762 52812773 -48567748 + L1M4 LINE L1 3951 5069 -1077 241 218 99 10 chr15 52812813 52812914 -48567607 + L1M4 LINE L1 44 153 -6389 759 290 86 43 chr15 52813066 52813679 -48566842 + L1M4 LINE L1 1396 2017 -4629 887 310 67 50 chr15 52813679 52814473 -48566048 + L2 LINE L2 2458 3269 -44 327 330 55 0 chr15 52814702 52814793 -48565728 + L2 LINE L2 3171 3266 -6 239 316 103 69 chr15 52814866 52815040 -48565481 + L2 LINE L2 3088 3267 -5 287 277 0 0 chr15 52815048 52815113 -48565408 + MIR SINE MIR 117 181 -81 405 0 0 0 chr15 52815144 52815189 -48565332 + (CA)n Simple_repeat Simple_repeat 2 46 0 471 160 0 64 chr15 52816799 52816893 -48563628 + Charlie3 DNA MER1_type 2619 2706 -4 829 301 174 35 chr15 52817176 52818627 -48561894 - L1ME3A LINE L1 -231 5922 4196 2021 99 6 64 chr15 52818627 52818940 -48561581 - AluSp SINE Alu -16 297 3 829 301 174 35 chr15 52818940 52819226 -48561295 - L1ME3A LINE L1 -1957 4196 3951 556 255 259 31 chr15 52819238 52819524 -48560997 + L2 LINE L2 2928 3278 -35 299 290 28 52 chr15 52820084 52820332 -48560189 - L1ME3A LINE L1 -3594 2535 2294 348 358 100 52 chr15 52820473 52820931 -48559590 - L1ME3A LINE L1 -5397 722 243 263 242 16 16 chr15 52821198 52821326 -48559195 + (TA)n Simple_repeat Simple_repeat 1 128 0 1933 274 82 42 chr15 52821645 52821815 -48558706 + L1ME3 LINE L1 6 168 -5914 1859 117 4 4 chr15 52821815 52822081 -48558440 - AluSx SINE Alu -13 299 34 1933 274 82 42 chr15 52822081 52823161 -48557360 + L1ME3 LINE L1 168 1203 -4879 355 257 238 0 chr15 52823207 52823413 -48557108 + L1ME3 LINE L1 4775 5029 -1051 2097 95 49 0 chr15 52823433 52823718 -48556803 - AluSx SINE Alu -9 303 5 1291 184 43 16 chr15 52823744 52823999 -48556522 + AluJo SINE Alu 37 298 -14 2071 228 83 21 chr15 52824002 52824819 -48555702 + L1ME3 LINE L1 5077 5951 -145 857 237 109 90 chr15 52824833 52825200 -48555321 + LTR16A LTR ERVL 18 391 -59 400 244 22 33 chr15 52825200 52825290 -48555231 + MER5A DNA MER1_type 3 91 -98 533 228 130 59 chr15 52825290 52825597 -48554924 + HAL1 LINE L1 748 1076 -1431 261 196 167 29 chr15 52825606 52825708 -48554813 + LTR33 LTR ERVL 4 119 -402 21 71 0 0 chr15 52825867 52825909 -48554612 + AT_rich Low_complexity Low_complexity 1 42 0 32 26 0 0 chr15 52829211 52829250 -48551271 + AT_rich Low_complexity Low_complexity 1 39 0 3007 174 55 17 chr15 52829372 52830014 -48550507 + L1MB5 LINE L1 5497 6162 -12 277 292 110 26 chr15 52830219 52830373 -48550148 - MER20 DNA MER1_type -4 215 49 259 130 2 130 chr15 52831137 52831206 -48549315 + MLT1C LTR MaLR 4 67 -307 669 153 146 0 chr15 52831212 52831290 -48549231 + MLT1C LTR MaLR 309 374 -93 207 0 0 0 chr15 52831290 52831313 -48549208 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 669 153 146 0 chr15 52831313 52831371 -48549150 + MLT1C LTR MaLR 374 465 -2 592 305 115 14 chr15 52831389 52832083 -48548438 - L1ME LINE L1 -399 5771 5007 208 299 65 0 chr15 52832185 52832262 -48548259 + L2 LINE L2 3186 3267 -5 750 168 122 10 chr15 52833023 52833220 -48547301 + L1MC5 LINE L1 7250 7468 -493 495 196 135 14 chr15 52833312 52833460 -48547061 + L1MC5 LINE L1 7747 7912 -49 833 144 8 0 chr15 52833483 52833615 -48546906 + FLAM_C SINE Alu 1 133 0 187 216 27 0 chr15 52834317 52834354 -48546167 + MIR SINE MIR 56 93 -169 245 164 279 0 chr15 52834488 52834549 -48545972 - MIR3 SINE MIR -48 160 83 1985 85 29 7 chr15 52835144 52835416 -48545105 + AluSc SINE Alu 23 300 -9 2332 63 0 3 chr15 52836352 52836665 -48543856 + AluY SINE Alu 1 312 0 1206 171 119 0 chr15 52836795 52837081 -48543440 - MER33 DNA MER1_type -3 321 2 1680 186 0 26 chr15 52837125 52837432 -48543089 + AluJo SINE Alu 1 299 -13 4115 77 6 0 chr15 52838069 52838618 -48541903 + MER41A LTR ERV1 3 554 0 2060 124 7 3 chr15 52838623 52838922 -48541599 - AluSx SINE Alu -12 300 1 273 261 166 13 chr15 52839853 52840010 -48540511 - L1ME LINE L1 -687 5477 5297 577 209 30 8 chr15 52840166 52840300 -48540221 + L1MD1 LINE L1 3524 3660 -2486 556 300 16 5 chr15 52840295 52840485 -48540036 + L1MD1 LINE L1 4771 4962 -1184 * 2423 163 17 44 chr15 52840472 52840950 -48539571 + L1MB3 LINE L1 5439 5903 -280 * 4447 124 38 29 chr15 52840940 52841739 -48538782 + L1MA3 LINE L1 5480 6285 -20 1450 171 11 4 chr15 52841784 52842064 -48538457 + L1MB3 LINE L1 5899 6180 -3 617 244 30 10 chr15 52842073 52842274 -48538247 + L1MD1 LINE L1 4943 5147 -999 10572 184 80 25 chr15 52842308 52845500 -48535021 + L1MC1 LINE L1 1 3371 -3055 860 272 47 15 chr15 52845504 52845846 -48534675 + L1MC1 LINE L1 3532 3884 -2542 * 5269 181 49 12 chr15 52845843 52847287 -48533234 + L1MC1 LINE L1 5110 6608 -5 4318 168 40 68 chr15 52847306 52848376 -48532145 + L1MD1 LINE L1 5197 6242 0 776 277 103 40 chr15 52848560 52849037 -48531484 - L1ME LINE L1 -1194 5021 4495 2447 63 0 0 chr15 52849037 52849337 -48531184 + AluY SINE Alu 1 300 -11 776 277 103 40 chr15 52849337 52849480 -48531041 - L1ME LINE L1 -1720 4495 4362 857 205 47 21 chr15 52849640 52849830 -48530691 + MER2 DNA MER2_type 1 195 -150 1305 296 116 21 chr15 52849941 52850317 -48530204 - L1ME LINE L1 -2134 4081 3742 1394 228 221 4 chr15 52850317 52850783 -48529738 - MLT1F1 LTR MaLR 0 567 1 1305 296 116 21 chr15 52850783 52851419 -48529102 - L1ME LINE L1 -2473 3742 2959 665 183 22 51 chr15 52851419 52851556 -48528965 - FLAM_A SINE Alu 0 133 1 1305 296 116 21 chr15 52851556 52851616 -48528905 - L1ME LINE L1 -3256 2959 2906 384 276 94 69 chr15 52851646 52852124 -48528397 - L1MC4 LINE L1 -29 8013 7492 1747 174 26 43 chr15 52852537 52852742 -48527779 - MER2 DNA MER2_type -1 344 146 2142 72 83 3 chr15 52852742 52853032 -48527489 - AluSq SINE Alu 0 313 1 1747 174 26 43 chr15 52853032 52853171 -48527350 - MER2 DNA MER2_type -199 146 6 2592 261 90 41 chr15 52853711 52853970 -48526551 - L1ME LINE L1 -3627 2588 2343 5308 106 32 18 chr15 52853970 52854817 -48525704 - L1PA15 LINE L1 -6 6159 5326 191 36 36 0 chr15 52854817 52854845 -48525676 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2242 84 3 3 chr15 52854845 52855131 -48525390 - AluSq SINE Alu -27 286 1 5308 106 32 18 chr15 52855131 52856029 -48524492 - L1PA15 LINE L1 -838 5327 4403 2592 261 90 41 chr15 52856029 52857550 -48522971 - L1ME LINE L1 -3872 2343 655 353 272 44 57 chr15 52858018 52858176 -48522345 - L1ME LINE L1 -6194 202 47 252 0 0 0 chr15 52859068 52859096 -48521425 + (TG)n Simple_repeat Simple_repeat 1 28 0 212 345 7 29 chr15 52860569 52860708 -48519813 + GA-rich Low_complexity Low_complexity 1 136 0 2624 150 127 22 chr15 52861872 52862950 -48517571 - L1MCa LINE L1 -3912 2516 1228 696 132 16 0 chr15 52863033 52863154 -48517367 + L1MCb LINE L1 991 1113 -4932 1255 161 92 20 chr15 52863359 52863818 -48516703 - MER44D DNA MER2_type -1 604 3 2074 75 0 0 chr15 52863854 52864133 -48516388 - AluY SINE Alu 0 311 33 598 213 69 64 chr15 52864166 52864354 -48516167 - MER5A DNA MER1_type 0 189 1 1335 90 0 23 chr15 52865413 52865590 -48514931 + AluY SINE Alu 1 173 -138 276 379 15 0 chr15 52865737 52865869 -48514652 - L2 LINE L2 -613 2701 2568 2124 131 54 26 chr15 52865871 52866223 -48514298 - THE1B LTR MaLR -2 362 1 10004 95 90 14 chr15 52866223 52867692 -48512829 - THE1B-int LTR MaLR 0 1580 1 2221 121 3 62 chr15 52867692 52868079 -48512442 - THE1B LTR MaLR 0 364 1 197 106 0 43 chr15 52868246 52868293 -48512228 + (AAATG)n Simple_repeat Simple_repeat 3 47 0 1924 104 4 8 chr15 52869773 52870041 -48510480 - AluY SINE Alu -11 300 34 278 299 0 26 chr15 52870275 52870352 -48510169 - MER117 DNA MER1_type -1 196 122 285 290 0 0 chr15 52871750 52871812 -48508709 - MIR3 SINE MIR -32 176 115 1358 145 108 82 chr15 52873365 52873423 -48507098 - MER46B DNA MER2_type -2495 236 181 1966 148 3 0 chr15 52873423 52873728 -48506793 - AluSx SINE Alu -1 311 6 1358 145 108 82 chr15 52873728 52873866 -48506655 - MER46B DNA MER2_type -2550 181 150 1883 109 16 20 chr15 52873866 52874169 -48506352 - AluSq SINE Alu -11 302 1 1358 145 108 82 chr15 52874169 52874323 -48506198 - MER46B DNA MER2_type -2581 150 1 213 39 0 0 chr15 52874583 52874609 -48505912 + (T)n Simple_repeat Simple_repeat 1 26 0 21 36 0 0 chr15 52875385 52875413 -48505108 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr15 52875877 52875900 -48504621 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 52877089 52877111 -48503410 + AT_rich Low_complexity Low_complexity 1 22 0 309 108 31 15 chr15 52877956 52878021 -48502500 + GA-rich Low_complexity Low_complexity 1 66 0 237 290 41 35 chr15 52879041 52879210 -48501311 + L2 LINE L2 2792 2961 -353 23 0 0 0 chr15 52879982 52880005 -48500516 + GC_rich Low_complexity Low_complexity 1 23 0 669 306 78 0 chr15 52880231 52880450 -48500071 - MIR SINE MIR 0 262 27 214 360 140 0 chr15 52881615 52881715 -48498806 + L2 LINE L2 3151 3264 -8 291 382 73 59 chr15 52881840 52882196 -48498325 - L2 LINE L2 -17 3255 2895 182 238 95 71 chr15 52883049 52883133 -48497388 + MIR SINE MIR 64 149 -59 213 373 40 40 chr15 52883574 52883700 -48496821 - L2 LINE L2 -1 3271 3146 218 235 59 44 chr15 52883907 52883975 -48496546 - MER91C DNA MER1_type -39 101 33 342 153 0 0 chr15 52884072 52884131 -48496390 + GA-rich Low_complexity Low_complexity 2 60 0 1912 107 0 22 chr15 52884132 52884403 -48496118 + AluSg1 SINE Alu 41 305 -4 1224 151 56 79 chr15 52885274 52885578 -48494943 - MLT2C1 LTR ERVL -59 338 42 227 67 0 0 chr15 52885576 52885606 -48494915 + MLT2D LTR ERVL 16 45 -369 * 263 337 33 0 chr15 52886904 52886996 -48493525 + L2 LINE L2 3170 3264 -8 655 286 46 18 chr15 52887378 52887595 -48492926 + MIR SINE MIR 27 249 -13 49 71 0 0 chr15 52889341 52889439 -48491082 + AT_rich Low_complexity Low_complexity 1 98 0 881 191 101 0 chr15 52889726 52889894 -48490627 - MER58A DNA MER1_type -1 223 39 234 270 133 19 chr15 52890366 52890577 -48489944 + L1M4 LINE L1 2482 2716 -3430 27 49 0 0 chr15 52890702 52890743 -48489778 + AT_rich Low_complexity Low_complexity 1 41 0 758 313 26 9 chr15 52890763 52890993 -48489528 - MIR SINE MIR -15 247 14 6331 83 10 4 chr15 52891422 52893271 -48487250 - L1PA12 LINE L1 -15 6153 4303 665 202 45 37 chr15 52893273 52893522 -48486999 - L1ME LINE L1 -676 5557 5306 358 157 24 0 chr15 52893526 52893609 -48486912 + (TA)n Simple_repeat Simple_repeat 1 85 0 4171 268 70 35 chr15 52893609 52893785 -48486736 - L1ME LINE L1 -915 5300 5132 1165 193 41 18 chr15 52893785 52894003 -48486518 + MER58A DNA MER1_type 1 223 -1 4171 268 70 35 chr15 52894003 52895996 -48484525 - L1ME LINE L1 -1083 5132 3056 1096 238 97 52 chr15 52896009 52896070 -48484451 - LTR41 LTR ERVL -13 760 703 2056 140 3 0 chr15 52896070 52896363 -48484158 + AluSx SINE Alu 1 294 -18 1096 238 97 52 chr15 52896363 52896704 -48483817 - LTR41 LTR ERVL -70 703 340 745 204 67 53 chr15 52896704 52896929 -48483592 - LTR41 LTR ERVL -545 228 1 277 189 0 0 chr15 52896930 52896983 -48483538 - L1ME LINE L1 -3156 3059 3007 1921 258 61 37 chr15 52896994 52897655 -48482866 - L1MEc LINE L1 -3257 2958 2315 2246 96 7 0 chr15 52897655 52897957 -48482564 - AluSp SINE Alu -9 304 1 1921 258 61 37 chr15 52897957 52898144 -48482377 - L1MEc LINE L1 -3900 2315 2134 3151 227 36 58 chr15 52898185 52899736 -48480785 - L1ME1 LINE L1 -5 6956 5439 1349 222 70 90 chr15 52899732 52899785 -48480736 - L1ME1 LINE L1 -3060 3881 3828 * 1475 176 19 53 chr15 52899785 52900103 -48480418 - AluJo SINE Alu 0 312 6 1349 222 70 90 chr15 52900103 52900725 -48479796 - L1ME1 LINE L1 -3113 3828 3220 1396 128 5 0 chr15 52900762 52900958 -48479563 - AluSx SINE Alu -12 300 104 30939 63 5 3 chr15 52900963 52904276 -48476245 - L1PA6 LINE L1 0 6154 2825 2362 82 0 13 chr15 52904276 52904591 -48475930 - AluY SINE Alu 0 311 1 30939 63 5 3 chr15 52904591 52906118 -48474403 - L1PA6 LINE L1 -3329 2825 1303 832 148 0 0 chr15 52906119 52906234 -48474287 - AluSx SINE Alu -198 115 1 2219 252 70 69 chr15 52906234 52906430 -48474091 - L1ME1 LINE L1 -3748 3193 2999 2876 177 25 31 chr15 52906430 52906494 -48474027 - L1MB5 LINE L1 -3 6171 6108 2131 87 3 17 chr15 52906494 52906792 -48473729 + AluY SINE Alu 1 294 -17 2876 177 25 31 chr15 52906792 52907361 -48473160 - L1MB5 LINE L1 -66 6108 5542 2219 252 70 69 chr15 52907361 52907550 -48472971 - L1ME1 LINE L1 -3942 2999 2812 246 32 0 0 chr15 52907550 52907581 -48472940 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1776 133 29 29 chr15 52907580 52907880 -48472641 - AluSg SINE Alu 0 300 1 2219 252 70 69 chr15 52907880 52909155 -48471366 - L1ME1 LINE L1 -4428 2513 1340 757 119 0 0 chr15 52909171 52909272 -48471249 - U6 snRNA snRNA -6 101 1 1306 259 92 35 chr15 52909277 52909764 -48470757 - L1ME1 LINE L1 -5095 1328 814 602 280 35 17 chr15 52910022 52910254 -48470267 - L1ME1 LINE L1 -5977 446 211 325 214 0 48 chr15 52910254 52910338 -48470183 - L1MEc LINE L1 -4443 2679 2600 558 252 41 56 chr15 52910499 52910769 -48469752 - L1MEc LINE L1 -4756 2366 2101 7003 53 12 10 chr15 52910799 52912325 -48468196 - L1PA8 LINE L1 -2 6170 4631 227 297 98 49 chr15 52912749 52913076 -48467445 - L1MEc LINE L1 -4944 1479 1137 1373 248 40 13 chr15 52913963 52914414 -48466107 - LTR37B LTR ERV1 0 468 6 1551 205 15 15 chr15 52914493 52914861 -48465660 + MER47B DNA MER2_type 1 417 -1 1992 134 20 38 chr15 52915921 52916264 -48464257 + MER1B DNA MER1_type 1 337 0 526 328 26 11 chr15 52916892 52917160 -48463361 + L1ME4a LINE L1 3895 4166 -1980 303 217 29 170 chr15 52917573 52917679 -48462842 + L1ME4a LINE L1 5874 5919 -202 302 0 26 0 chr15 52917679 52917717 -48462804 + (TG)n Simple_repeat Simple_repeat 2 40 0 303 217 29 170 chr15 52917717 52917886 -48462635 + L1ME4a LINE L1 5919 6110 -11 313 269 154 51 chr15 52918132 52918444 -48462077 + L1ME4a LINE L1 4881 5224 -922 623 276 150 42 chr15 52918528 52918795 -48461726 + L1ME4a LINE L1 5358 5595 -526 696 176 7 37 chr15 52918795 52918931 -48461590 - FLAM_C SINE Alu 0 133 2 623 276 150 42 chr15 52918931 52919231 -48461290 + L1ME4a LINE L1 5595 5986 -135 388 275 80 0 chr15 52919481 52919619 -48460902 - L1MEc LINE L1 -3304 3863 3715 250 314 72 14 chr15 52919697 52919920 -48460601 - L1MEc LINE L1 -4576 2772 2537 340 135 0 0 chr15 52919977 52920029 -48460492 - MLT1D LTR MaLR -360 145 94 229 146 0 0 chr15 52920607 52920648 -48459873 + Charlie1 DNA MER1_type 2171 2211 -550 184 301 157 24 chr15 52921417 52921500 -48459021 + L2 LINE L2 2224 2317 -997 652 154 0 0 chr15 52921907 52922011 -48458510 - LTR40a LTR ERVL -16 503 400 4828 141 24 18 chr15 52922030 52922909 -48457612 - L1MA8 LINE L1 -2 6289 5406 2815 296 33 22 chr15 52922950 52924433 -48456088 - L1M4 LINE L1 -4167 3001 1496 1607 184 3 20 chr15 52925095 52925389 -48455132 - AluJb SINE Alu -22 290 2 305 370 37 15 chr15 52925433 52925568 -48454953 - L1M4 LINE L1 -5991 1107 970 391 300 75 17 chr15 52925571 52925691 -48454830 - LTR40a LTR ERVL -108 411 285 1722 97 79 7 chr15 52926067 52926346 -48454175 - L1MA8 LINE L1 -5 6286 5988 720 349 54 20 chr15 52926350 52927253 -48453268 + HERVL LTR ERVL 4320 5287 -367 1334 223 41 74 chr15 52927261 52927678 -48452843 + LTR16A1 LTR ERVL 55 457 0 1587 188 0 7 chr15 52927688 52927970 -48452551 + AluJo SINE Alu 1 280 -32 213 159 0 0 chr15 52928006 52928050 -48452471 + A-rich Low_complexity Low_complexity 1 44 0 1358 233 99 71 chr15 52928094 52928631 -48451890 + MER77 LTR ERV1 52 603 -2 434 265 127 17 chr15 52929786 52929967 -48450554 + MIR SINE MIR 62 262 0 189 121 0 0 chr15 52931452 52931485 -48449036 + (T)n Simple_repeat Simple_repeat 1 33 0 186 43 0 0 chr15 52931658 52931681 -48448840 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2016 122 31 0 chr15 52932152 52932440 -48448081 - AluSx SINE Alu -15 297 1 180 359 28 14 chr15 52932470 52932615 -48447906 + L2 LINE L2 3167 3313 0 253 370 98 16 chr15 52933218 52933464 -48447057 + L2 LINE L2 1713 1978 -1336 19801 161 73 54 chr15 52933589 52935321 -48445200 + L1MA3 LINE L1 24 1721 -6003 528 16 0 0 chr15 52935321 52935382 -48445139 + (GA)n Simple_repeat Simple_repeat 2 62 0 19801 161 73 54 chr15 52935382 52936843 -48443678 + L1MA3 LINE L1 1721 3152 -4572 1658 186 27 0 chr15 52936843 52936956 -48443565 + AluJo SINE Alu 3 111 -201 378 0 0 0 chr15 52936956 52936998 -48443523 + (CA)n Simple_repeat Simple_repeat 2 43 0 1658 186 27 0 chr15 52936998 52937180 -48443341 + AluJo SINE Alu 111 306 -6 19801 161 73 54 chr15 52937180 52939383 -48441138 + L1MA3 LINE L1 3152 5311 -2413 1421 153 0 5 chr15 52939383 52939599 -48440922 - AluJo SINE Alu -37 275 61 19801 161 73 54 chr15 52939599 52941537 -48438984 + L1MA3 LINE L1 5311 7724 0 183 256 0 0 chr15 52942158 52942197 -48438324 - MIR SINE MIR -6 256 218 4618 168 45 10 chr15 52942200 52943804 -48436717 - L1MB7 LINE L1 -5 6248 4599 1870 213 54 22 chr15 52943800 52944336 -48436185 - L1MB7 LINE L1 -2099 4116 3564 * 198 0 0 0 chr15 52944336 52944358 -48436163 + (T)n Simple_repeat Simple_repeat 1 22 0 2359 135 54 92 chr15 52944358 52944785 -48435736 - MER67A LTR ERV1 -29 514 109 2241 125 0 0 chr15 52944785 52945096 -48435425 + AluSq SINE Alu 1 311 -2 2359 135 54 92 chr15 52945096 52945202 -48435319 - MER67A LTR ERV1 -434 109 1 42911 32 21 2 chr15 52945779 52951813 -48428708 - L1PA2 LINE L1 -1 6154 1 4216 229 58 46 chr15 52951793 52953523 -48426998 - L1MB7 LINE L1 -2612 3603 1877 * 1064 189 0 11 chr15 52954905 52955111 -48425410 - MLT1A2 LTR MaLR 0 390 188 218 116 23 0 chr15 52955116 52955159 -48425362 + GA-rich Low_complexity Low_complexity 2 45 0 277 164 27 41 chr15 52955205 52955278 -48425243 - MLT1A2 LTR MaLR -222 168 97 390 220 127 0 chr15 52955337 52955455 -48425066 + MER94 DNA DNA 1 133 -1 582 269 14 33 chr15 52956505 52956717 -48423804 + L1ME1 LINE L1 5941 6148 -18 575 324 106 8 chr15 52956726 52957047 -48423474 - L2 LINE L2 -317 2996 2633 438 339 33 6 chr15 52957227 52957410 -48423111 - L2 LINE L2 -2050 1264 1077 824 158 0 6 chr15 52958275 52958433 -48422088 + GA-rich Low_complexity Low_complexity 3 159 0 312 253 127 40 chr15 52959795 52959945 -48420576 - MIR3 SINE MIR -6 202 40 441 298 75 63 chr15 52960715 52960967 -48419554 - L3 LINE CR1 -87 1490 1236 32 75 0 0 chr15 52961033 52961100 -48419421 + AT_rich Low_complexity Low_complexity 1 67 0 656 298 59 4 chr15 52961162 52961400 -48419121 - LTR16C LTR ERVL 0 491 241 907 83 8 0 chr15 52961561 52961682 -48418839 + L1PB1 LINE L1 6029 6150 -1 259 235 184 28 chr15 52961700 52961955 -48418566 - L1ME4a LINE L1 -121 6000 5706 21010 157 47 9 chr15 52962062 52966401 -48414120 + L1MA3 LINE L1 9 4520 -3045 7678 18 1 0 chr15 52966374 52967266 -48413255 + L1PA2 LINE L1 6680 7572 -2 * 11895 144 22 6 chr15 52967260 52970438 -48410083 + L1MA3 LINE L1 4492 7724 0 229 150 25 0 chr15 52970827 52970867 -48409654 - LTR16A LTR ERVL 0 450 410 1149 195 43 102 chr15 52970867 52971241 -48409280 + MLT1A1 LTR MaLR 1 352 -13 1105 270 73 29 chr15 52971247 52971628 -48408893 - LTR16A LTR ERVL -35 415 18 879 333 32 36 chr15 52971810 52972032 -48408489 - HERV16 LTR ERVL -414 5350 5129 3083 111 150 0 chr15 52972032 52972584 -48407937 + LTR24C LTR ERV1 1 635 0 879 333 32 36 chr15 52972584 52972859 -48407662 - HERV16 LTR ERVL -635 5129 4855 389 283 41 21 chr15 52972995 52973140 -48407381 - HERV16 LTR ERVL -868 4617 4470 1560 314 92 36 chr15 52973207 52973270 -48407251 - HERV16 LTR ERVL -2283 2713 2655 2146 120 0 3 chr15 52973270 52973562 -48406959 + AluSq SINE Alu 1 291 -22 1560 314 92 36 chr15 52973562 52973736 -48406785 - HERV16 LTR ERVL -2341 2655 2492 2432 93 0 0 chr15 52973736 52974048 -48406473 + AluSx SINE Alu 1 312 0 1560 314 92 36 chr15 52974048 52974291 -48406230 - HERV16 LTR ERVL -2504 2492 2264 1815 173 65 6 chr15 52974291 52974632 -48405889 + MLT1A1 LTR MaLR 4 364 -1 1560 314 92 36 chr15 52974632 52975075 -48405446 - HERV16 LTR ERVL -2732 2264 1925 1041 317 89 39 chr15 52975114 52975733 -48404788 - HERV16 LTR ERVL -3886 1110 461 323 222 56 24 chr15 52976155 52976281 -48404240 - LTR16A1 LTR ERVL 0 457 328 22 35 0 0 chr15 52976321 52976350 -48404171 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr15 52976411 52976432 -48404089 + AT_rich Low_complexity Low_complexity 1 21 0 601 217 70 0 chr15 52976834 52976977 -48403544 - MIR SINE MIR -32 230 78 1411 239 42 21 chr15 52977777 52978303 -48402218 + L1M4 LINE L1 2880 3416 -2730 4800 144 20 69 chr15 52978308 52979293 -48401228 + L1MB8 LINE L1 5183 6148 -30 208 286 0 16 chr15 52979609 52979672 -48400849 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 402 115 0 0 chr15 52979674 52979735 -48400786 + (TA)n Simple_repeat Simple_repeat 2 62 0 718 162 0 8 chr15 52980107 52980224 -48400297 - FLAM_A SINE Alu -17 116 1 3538 259 18 37 chr15 52981332 52982616 -48397905 + L1M4 LINE L1 4103 5362 -784 1032 193 19 5 chr15 52982625 52982838 -48397683 + L1MD1 LINE L1 6008 6223 -19 1132 269 82 50 chr15 52983017 52983674 -48396847 - L1MDa LINE L1 -4515 1565 888 2011 249 95 18 chr15 52983689 52984308 -48396213 - L1MDa LINE L1 -5307 763 97 239 296 0 16 chr15 52984315 52984440 -48396081 + (TATATG)n Simple_repeat Simple_repeat 6 128 0 270 197 105 13 chr15 52984451 52984527 -48395994 - L1MDa LINE L1 -5982 88 6 379 321 66 96 chr15 52984539 52984841 -48395680 + L2 LINE L2 2969 3261 -11 2054 120 0 27 chr15 52986888 52987188 -48393333 - AluSx SINE Alu -20 292 1 21 0 0 0 chr15 52987389 52987410 -48393111 + AT_rich Low_complexity Low_complexity 1 21 0 301 253 90 48 chr15 52989043 52989209 -48391312 + L1M4 LINE L1 2244 2416 -3730 710 207 88 72 chr15 52989251 52989585 -48390936 + HsTC2 DNA Tc2 11 1677 -221 1093 246 51 10 chr15 52989593 52989958 -48390563 - L1ME1 LINE L1 -4 6145 5549 * 2029 210 105 88 chr15 52989952 52990963 -48389558 - L1ME1 LINE L1 -1164 4965 3938 298 305 35 30 chr15 52991087 52991290 -48389231 - L1ME1 LINE L1 -4485 1644 1441 869 280 96 47 chr15 52991901 52992718 -48387803 - L1ME1 LINE L1 -4837 1473 573 722 180 54 14 chr15 52993072 52993318 -48387203 - L1MC2 LINE L1 -3 7764 7529 2247 120 27 27 chr15 52993318 52993693 -48386828 + THE1C LTR MaLR 1 375 0 722 180 54 14 chr15 52993693 52993816 -48386705 - L1MC2 LINE L1 -238 7529 6110 2018 147 48 44 chr15 52993826 52994281 -48386240 - L1MB4 LINE L1 -1 6179 5723 3282 242 56 1 chr15 52994296 52995209 -48385312 - L1MEc LINE L1 -1904 4478 3516 1506 266 55 28 chr15 52995221 52995691 -48384830 + MER74B LTR ERVL 66 548 -74 969 247 101 21 chr15 52995740 52996214 -48384307 - L1MEc LINE L1 -2865 3517 3006 1545 188 92 62 chr15 52996215 52996663 -48383858 + MLT1C LTR MaLR 2 462 -5 1688 239 52 4 chr15 52996663 52997141 -48383380 - L1MEc LINE L1 -3368 3014 2514 2781 165 37 78 chr15 52997177 52997903 -48382618 - L1MB8 LINE L1 -2 6176 5481 650 110 0 0 chr15 52997904 52997995 -48382526 - AluSx SINE Alu -16 293 203 871 75 0 0 chr15 52997997 52998104 -48382417 - AluSx SINE Alu -206 107 1 1831 178 53 63 chr15 52998105 52998289 -48382232 - L1MB8 LINE L1 -692 5486 5302 1652 155 6 65 chr15 52998289 52998612 -48381909 - AluJo SINE Alu -3 309 6 1831 178 53 63 chr15 52998612 52998776 -48381745 - L1MB8 LINE L1 -876 5302 5138 2253 112 3 0 chr15 52998776 52999088 -48381433 - AluSp SINE Alu 0 313 1 1831 178 53 63 chr15 52999088 52999427 -48381094 - L1MB8 LINE L1 -1040 5138 4804 702 294 104 5 chr15 52999439 52999660 -48380861 - MIR SINE MIR -15 247 5 249 312 152 60 chr15 53000719 53001068 -48379453 + L2 LINE L2 2553 2933 -381 364 281 129 6 chr15 53001104 53001282 -48379239 + L2 LINE L2 3039 3238 -75 267 289 164 41 chr15 53002249 53002914 -48377607 - L1MB8 LINE L1 -1548 4598 3852 1098 303 119 39 chr15 53002927 53003789 -48376732 - L1MB8 LINE L1 -2360 3786 2856 892 171 7 0 chr15 53003846 53003992 -48376529 - AluJb SINE Alu -32 280 134 1535 139 93 19 chr15 53003992 53004250 -48376271 - AluJb SINE Alu -15 297 21 230 289 59 13 chr15 53004268 53004420 -48376101 - L1MB8 LINE L1 -3338 2808 2650 327 258 98 78 chr15 53004610 53004927 -48375594 - L1MEc LINE L1 -3928 2456 2189 360 309 108 20 chr15 53005014 53005218 -48375303 - L1MEc LINE L1 -4634 1929 1708 492 245 70 77 chr15 53005420 53005490 -48375031 - L1MEc LINE L1 -4900 1472 1403 1922 124 31 3 chr15 53005490 53005781 -48374740 - AluSx SINE Alu -11 301 3 492 245 70 77 chr15 53005781 53006037 -48374484 - L1MEc LINE L1 -4969 1403 1148 21 0 0 0 chr15 53006120 53006141 -48374380 + AT_rich Low_complexity Low_complexity 1 21 0 346 363 53 37 chr15 53006192 53006437 -48374084 - L1MEc LINE L1 -5368 1004 756 233 335 66 16 chr15 53006601 53006783 -48373738 - L1MEc LINE L1 -5919 453 263 225 175 0 0 chr15 53008279 53008319 -48372202 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 47 82 0 0 chr15 53008670 53008780 -48371741 + AT_rich Low_complexity Low_complexity 1 110 0 5763 131 0 0 chr15 53009043 53010361 -48370160 - L1MA2 LINE L1 0 6304 4945 4312 31 0 0 chr15 53010361 53010868 -48369653 + L1PA3 LINE L1 5645 6152 -3 20907 157 39 20 chr15 53010877 53013420 -48367101 - L1M1 LINE L1 -630 7093 4599 1831 171 10 3 chr15 53013420 53013729 -48366792 + AluJb SINE Alu 1 311 -1 20907 157 39 20 chr15 53013729 53018120 -48362401 - L1M1 LINE L1 -3124 4599 16 189 254 131 54 chr15 53018769 53018899 -48361622 - MIR SINE MIR 0 262 123 1503 201 23 23 chr15 53019560 53019903 -48360618 - L1M4 LINE L1 -1062 5084 4742 2249 233 51 8 chr15 53020555 53021087 -48359434 + L1ME1 LINE L1 5612 6166 0 210 299 126 0 chr15 53021089 53021176 -48359345 - L2 LINE L2 -19 3253 3156 705 222 58 1 chr15 53022327 53022501 -48358020 - MER58B DNA MER1_type -2 339 3 383 294 52 44 chr15 53022581 53022717 -48357804 - L2 LINE L2 0 3272 3136 21 36 0 0 chr15 53024709 53024737 -48355784 + AT_rich Low_complexity Low_complexity 1 28 0 1566 71 44 4 chr15 53024907 53025133 -48355388 + L1MA1 LINE L1 6068 6302 0 25 0 0 0 chr15 53025753 53025778 -48354743 + AT_rich Low_complexity Low_complexity 1 25 0 465 209 55 66 chr15 53026153 53026335 -48354186 + L1MC5 LINE L1 7752 7931 -30 355 320 0 8 chr15 53026724 53026815 -48353706 + MIR3 SINE MIR 85 176 -32 2698 100 51 5 chr15 53026815 53027224 -48353297 - MSTA LTR MaLR 0 428 1 355 320 0 8 chr15 53027224 53027254 -48353267 + MIR3 SINE MIR 176 205 -3 315 272 33 0 chr15 53028346 53028438 -48352083 + HsTC2 DNA Tc2 3 97 -1801 438 313 68 6 chr15 53028440 53028603 -48351918 - L1MEd LINE L1 -5472 647 475 298 203 116 0 chr15 53028707 53028776 -48351745 + HsTC2 DNA Tc2 1824 1900 0 4194 159 52 25 chr15 53029611 53030668 -48349853 - L1MB8 LINE L1 -1 6177 5091 967 241 38 8 chr15 53030948 53031213 -48349308 - L1ME1 LINE L1 -18 6148 5876 2042 148 77 0 chr15 53031241 53031579 -48348942 + THE1B LTR MaLR 1 364 0 4889 90 3 1 chr15 53031579 53032243 -48348278 + THE1B-int LTR MaLR 1 665 -915 364 102 0 0 chr15 53032224 53032283 -48348238 + THE1B-int LTR MaLR 1521 1579 -1 * 2228 114 84 0 chr15 53032283 53032617 -48347904 + THE1B LTR MaLR 3 364 0 339 176 14 27 chr15 53032639 53032713 -48347808 - L1MD2 LINE L1 -529 5830 5758 229 250 19 0 chr15 53032740 53032792 -48347729 + MER3 DNA MER1_type 36 88 -121 * 1073 167 115 45 chr15 53032759 53033046 -48347475 + MER33 DNA MER1_type 9 315 -9 1069 77 0 0 chr15 53033493 53033623 -48346898 + AluYb8 SINE Alu 1 130 -188 37485 86 10 11 chr15 53033633 53039785 -48340736 + L1PA6 LINE L1 11 6152 -2 1294 74 26 26 chr15 53039787 53039976 -48340545 + AluYa5 SINE Alu 120 308 -3 355 229 84 0 chr15 53039987 53040070 -48340451 - MIR SINE MIR -153 109 20 2954 236 71 56 chr15 53040590 53041939 -48338582 - L1ME1 LINE L1 -5 6161 4795 860 275 19 28 chr15 53041942 53042262 -48338259 - L1ME1 LINE L1 -2590 3556 3240 3356 270 144 38 chr15 53042318 53043558 -48336963 + L2 LINE L2 1283 2391 -922 2397 68 3 0 chr15 53043558 53043853 -48336668 + AluY SINE Alu 1 296 -15 3356 270 144 38 chr15 53043853 53044148 -48336373 + L2 LINE L2 2391 2653 -660 1728 186 17 3 chr15 53044148 53044439 -48336082 - AluJb SINE Alu -17 295 1 3356 270 144 38 chr15 53044439 53044739 -48335782 + L2 LINE L2 2653 3313 0 188 204 23 23 chr15 53044806 53044850 -48335671 - MIR3 SINE MIR -157 51 8 202 204 23 0 chr15 53045343 53045387 -48335134 - L2 LINE L2 -1893 1421 1377 281 313 79 111 chr15 53045863 53046243 -48334278 - L2 LINE L2 -5 3267 2900 180 0 0 0 chr15 53046816 53046836 -48333685 + (TG)n Simple_repeat Simple_repeat 2 21 0 222 290 14 29 chr15 53047298 53047367 -48333154 - L2 LINE L2 0 3313 3246 202 235 20 39 chr15 53047399 53047450 -48333071 + MIR SINE MIR 97 146 -62 973 139 14 0 chr15 53047465 53047609 -48332912 - MER5A DNA MER1_type 0 189 44 321 250 12 62 chr15 53047621 53047701 -48332820 + L2 LINE L2 3196 3271 -1 21 36 0 0 chr15 53047802 53047830 -48332691 + AT_rich Low_complexity Low_complexity 1 28 0 294 154 21 21 chr15 53047830 53047973 -48332548 + (TTAA)n Simple_repeat Simple_repeat 1 143 0 30 69 0 0 chr15 53047976 53048034 -48332487 + AT_rich Low_complexity Low_complexity 1 58 0 1460 148 34 10 chr15 53048034 53048332 -48332189 - L1MB2 LINE L1 -3 6168 5864 195 304 80 24 chr15 53048357 53048482 -48332039 + L3 LINE CR1 637 768 -809 16678 165 25 7 chr15 53048887 53053140 -48327381 - L1PA14 LINE L1 0 6161 1833 1419 84 0 0 chr15 53053140 53053318 -48327203 + AluY SINE Alu 128 305 -6 969 229 120 27 chr15 53053539 53053914 -48326607 - L1MEc LINE L1 -1465 4750 4341 535 244 62 19 chr15 53053932 53054092 -48326429 - MER58C DNA MER1_type -6 209 43 3483 227 82 59 chr15 53054093 53054935 -48325586 - L1MEc LINE L1 -2178 4037 3143 2212 108 0 19 chr15 53054935 53055251 -48325270 - AluSg SINE Alu 0 310 1 3483 227 82 59 chr15 53055251 53055939 -48324582 - L1MEc LINE L1 -3072 3143 2472 764 156 0 88 chr15 53055971 53056131 -48324390 - MER46A DNA MER2_type -90 146 1 299 206 31 10 chr15 53056137 53056234 -48324287 - L1MEc LINE L1 -3793 2422 2324 4029 26 0 0 chr15 53056276 53056742 -48323779 - L1PA3 LINE L1 -167 5988 5523 1342 35 0 35 chr15 53056742 53056910 -48323611 + L1PA3 LINE L1 5987 6152 -3 816 219 204 3 chr15 53056925 53057282 -48323239 - L1MEc LINE L1 -4086 2310 1882 2412 151 40 11 chr15 53057291 53057767 -48322754 - L1MB2 LINE L1 -2 6169 5680 2064 223 90 57 chr15 53057793 53058164 -48322357 - L1M4 LINE L1 -3064 3318 2961 981 160 34 55 chr15 53058164 53058401 -48322120 - L1MB8 LINE L1 -13 6165 5934 2064 223 90 57 chr15 53058401 53058420 -48322101 - L1M4 LINE L1 -3421 2961 2944 1224 89 58 5 chr15 53058420 53058611 -48321910 - L1PB1 LINE L1 -1 6150 5950 2064 223 90 57 chr15 53058611 53059247 -48321274 - L1M4 LINE L1 -3438 2944 2251 3590 229 103 32 chr15 53059250 53060637 -48319884 - L1M4 LINE L1 -4259 2125 542 489 284 57 83 chr15 53060765 53061188 -48319333 - L1M3d LINE L1 -5479 412 1 219 36 0 0 chr15 53061241 53061269 -48319252 + (CA)n Simple_repeat Simple_repeat 2 29 0 290 213 0 0 chr15 53061335 53061396 -48319125 - L1MEc LINE L1 -4631 1765 1705 363 330 54 15 chr15 53061691 53061894 -48318627 - L1MEc LINE L1 -5772 433 223 22 35 0 0 chr15 53062756 53062785 -48317736 + AT_rich Low_complexity Low_complexity 1 29 0 1791 164 4 0 chr15 53064842 53065122 -48315399 - AluJb SINE Alu -31 281 1 1585 144 68 0 chr15 53065505 53065755 -48314766 + AluSx SINE Alu 1 267 -45 215 326 15 59 chr15 53065810 53065945 -48314576 - MIR SINE MIR -64 144 16 31 0 0 0 chr15 53066248 53066279 -48314242 + AT_rich Low_complexity Low_complexity 1 31 0 211 296 0 0 chr15 53066406 53066450 -48314071 - L2 LINE L2 -8 3305 3262 249 189 176 0 chr15 53066637 53066711 -48313810 + MLT1J LTR MaLR 419 505 -6 438 137 0 27 chr15 53067314 53067387 -48313134 - 5S rRNA rRNA -20 101 31 1664 39 0 43 chr15 53067825 53068055 -48312466 + L1PA8 LINE L1 5947 6166 -6 402 364 96 0 chr15 53068200 53068409 -48312112 + L2 LINE L2 2594 2822 -492 289 245 116 45 chr15 53068447 53068602 -48311919 + L2 LINE L2 3133 3298 -15 219 217 22 0 chr15 53068654 53068700 -48311821 + L2 LINE L2 3220 3266 -6 2921 231 73 41 chr15 53069662 53070687 -48309834 + L1MD1 LINE L1 2873 3930 -2216 * 21617 47 3 14 chr15 53070679 53073502 -48307019 + L1P LINE L1 2591 5381 -765 3242 201 61 74 chr15 53073500 53075378 -48305143 + L1MD1 LINE L1 4073 5937 -305 * 816 167 36 42 chr15 53075405 53075597 -48304924 - L1MB7 LINE L1 -326 5858 5668 2537 232 57 55 chr15 53075600 53076095 -48304426 - L1MDa LINE L1 -3090 3450 2951 5184 140 15 25 chr15 53076095 53076354 -48304167 + L1PA15 LINE L1 5056 5316 -849 2377 72 0 22 chr15 53076354 53076672 -48303849 + AluY SINE Alu 1 311 0 5184 140 15 25 chr15 53076672 53077531 -48302990 + L1PA15 LINE L1 5316 6165 0 2537 232 57 55 chr15 53077531 53077994 -48302527 - L1MDa LINE L1 -3589 2951 2490 26 30 0 0 chr15 53078160 53078193 -48302328 + AT_rich Low_complexity Low_complexity 1 33 0 249 281 35 0 chr15 53078579 53078636 -48301885 - L2 LINE L2 0 3272 3214 384 183 207 0 chr15 53078937 53079019 -48301502 - MIR SINE MIR -4 258 160 268 191 0 0 chr15 53080273 53080315 -48300206 - MIR SINE MIR -56 152 111 21 36 0 0 chr15 53081110 53081138 -48299383 + AT_rich Low_complexity Low_complexity 1 28 0 574 197 53 15 chr15 53081622 53081754 -48298767 - MER105 DNA DNA -41 163 27 1121 248 118 14 chr15 53081769 53082270 -48298251 - L1M4 LINE L1 -1328 5316 4764 585 189 30 15 chr15 53082270 53082402 -48298119 - L1MA10 LINE L1 -10 6324 6191 1460 238 61 16 chr15 53082420 53082865 -48297656 - L1ME2 LINE L1 -142 6022 5558 2868 134 41 6 chr15 53082867 53083352 -48297169 - L1PA16 LINE L1 -3 6163 5662 2135 124 0 3 chr15 53083371 53083677 -48296844 - AluSx SINE Alu -7 305 1 2005 293 126 23 chr15 53083678 53083945 -48296576 - L1M4 LINE L1 -1890 4754 4516 2837 3 0 0 chr15 53083945 53084256 -48296265 - AluYa5 SINE Alu 0 311 1 2005 293 126 23 chr15 53084256 53085159 -48295362 - L1M4 LINE L1 -2128 4516 3463 3813 208 66 10 chr15 53085186 53086089 -48294432 - L1MB4 LINE L1 0 6180 5231 424 250 91 40 chr15 53086254 53086430 -48294091 - L1M4 LINE L1 -6294 248 64 337 178 0 0 chr15 53086514 53086587 -48293934 - L1MB4 LINE L1 -3170 2976 2904 239 200 0 36 chr15 53086600 53086655 -48293866 + Tigger5 DNA MER2_type 28 80 -2243 272 167 0 0 chr15 53086712 53086754 -48293767 + Tigger5 DNA MER2_type 2282 2323 0 460 323 5 5 chr15 53086757 53086955 -48293566 - L1MB4 LINE L1 -3246 2900 2703 2596 168 51 38 chr15 53087064 53087452 -48293069 - MER68 LTR ERV1 0 562 163 2414 78 0 0 chr15 53087452 53087760 -48292761 - AluY SINE Alu -3 308 1 2596 168 51 38 chr15 53087760 53087924 -48292597 - MER68 LTR ERV1 -399 163 3 382 310 39 75 chr15 53089068 53089153 -48291368 - L1MEc LINE L1 -4759 1551 1465 1805 82 11 15 chr15 53089153 53089421 -48291100 - L1MA2 LINE L1 0 6304 6038 382 310 39 75 chr15 53089421 53089590 -48290931 - L1MEc LINE L1 -4845 1465 1306 290 281 53 61 chr15 53089605 53089833 -48290688 - L1MEc LINE L1 -4918 1201 976 281 135 77 0 chr15 53089849 53089901 -48290620 - L1ME3A LINE L1 -11 6159 6104 189 0 0 0 chr15 53090196 53090217 -48290304 + (A)n Simple_repeat Simple_repeat 1 21 0 545 313 156 18 chr15 53090542 53090868 -48289653 + L3 LINE CR1 917 1287 -290 245 352 65 19 chr15 53090947 53091055 -48289466 + L3 LINE CR1 1442 1554 -23 1159 247 36 62 chr15 53091640 53092256 -48288265 - L1MC5 LINE L1 -48 7913 7314 2907 152 44 22 chr15 53092266 53092486 -48288035 + L1MD2 LINE L1 5377 5591 -768 1621 164 35 11 chr15 53092486 53092773 -48287748 + AluJo SINE Alu 1 294 -18 2907 152 44 22 chr15 53092773 53093100 -48287421 + L1MD2 LINE L1 5591 5936 -423 607 138 28 0 chr15 53093120 53093229 -48287292 - L1MB7 LINE L1 -19 6165 6054 3434 150 29 24 chr15 53093237 53093863 -48286658 - L1MC1 LINE L1 -5 6328 5700 2441 149 12 19 chr15 53094006 53094430 -48286091 - L1MB7 LINE L1 -121 6063 5643 726 160 17 0 chr15 53094433 53094552 -48285969 + MLT1E3 LTR MaLR 504 624 0 409 155 36 12 chr15 53094554 53094638 -48285883 + L1MC4 LINE L1 7542 7627 -415 2173 113 3 22 chr15 53094658 53094976 -48285545 + AluSp SINE Alu 1 312 -1 252 0 0 0 chr15 53094976 53095004 -48285517 + (TA)n Simple_repeat Simple_repeat 2 29 0 1875 143 84 62 chr15 53095009 53095379 -48285142 - LTR24 LTR ERV1 -42 425 48 992 198 85 27 chr15 53095379 53095637 -48284884 + L1MD3 LINE L1 7713 7985 -10 653 247 47 12 chr15 53095641 53095811 -48284710 + L1MC4a LINE L1 6609 6784 -1024 1262 234 73 52 chr15 53095847 53096270 -48284251 - MLT2B1 LTR ERVL -88 432 1 548 199 86 59 chr15 53096270 53096347 -48284174 + L1MC4 LINE L1 6872 6945 -1097 2190 115 0 0 chr15 53096347 53096651 -48283870 + AluSx SINE Alu 1 304 -8 548 199 86 59 chr15 53096651 53096759 -48283762 + L1MC4 LINE L1 6945 7062 -980 713 216 0 55 chr15 53096948 53097129 -48283392 - FRAM SINE Alu 0 40 1 269 145 40 57 chr15 53097135 53097225 -48283296 + L1MC5 LINE L1 7097 7191 -770 550 290 85 30 chr15 53097271 53097864 -48282657 + L1MC5 LINE L1 7268 7778 -183 182 278 37 19 chr15 53098317 53098371 -48282150 - L2 LINE L2 -4 3268 3214 * 695 293 63 5 chr15 53098337 53098467 -48282054 - MIR SINE MIR -19 243 93 2282 90 3 0 chr15 53098467 53098766 -48281755 + AluSg SINE Alu 1 300 -10 695 293 63 5 chr15 53098766 53098857 -48281664 - MIR SINE MIR -169 93 9 358 194 148 56 chr15 53099384 53099492 -48281029 - MIR SINE MIR -95 167 50 225 65 0 0 chr15 53099545 53099576 -48280945 + (CCA)n Simple_repeat Simple_repeat 3 33 0 183 42 0 0 chr15 53100550 53100574 -48279947 + (C)n Simple_repeat Simple_repeat 1 24 0 401 242 67 0 chr15 53100920 53101040 -48279481 + L1MCa LINE L1 20 147 -6279 1181 139 49 67 chr15 53101628 53101861 -48278660 - L1MC2 LINE L1 -11 6333 6104 1814 136 68 0 chr15 53101861 53102141 -48278380 - AluSx SINE Alu -11 301 3 1181 139 49 67 chr15 53102141 53102174 -48278347 - L1MC2 LINE L1 -240 6104 6072 438 238 0 0 chr15 53102176 53102260 -48278261 + FRAM/FAM SINE Alu 1 84 -92 1733 148 3 16 chr15 53102260 53102563 -48277958 - L1MC2 LINE L1 -258 6086 5788 26 74 0 0 chr15 53102565 53102619 -48277902 + AT_rich Low_complexity Low_complexity 1 54 0 232 207 0 17 chr15 53104119 53104177 -48276344 + (TA)n Simple_repeat Simple_repeat 2 58 0 189 147 0 0 chr15 53104736 53104770 -48275751 + (GA)n Simple_repeat Simple_repeat 1 34 0 230 329 239 12 chr15 53104929 53105109 -48275412 - MIR SINE MIR -13 249 35 477 203 24 123 chr15 53105140 53105352 -48275169 - MER112 DNA MER1_type -62 198 8 273 57 0 0 chr15 53106252 53106287 -48274234 + (A)n Simple_repeat Simple_repeat 1 35 0 532 247 36 6 chr15 53106574 53106740 -48273781 - MER104 DNA Tc2 -4 176 6 294 303 0 10 chr15 53106968 53107067 -48273454 - LTR16B LTR ERVL 0 464 367 510 318 91 55 chr15 53107093 53107401 -48273120 - LTR16B LTR ERVL -145 319 1 461 264 18 9 chr15 53107987 53108097 -48272424 + MIR3 SINE MIR 87 197 -11 235 359 13 0 chr15 53108159 53108237 -48272284 - L3 LINE CR1 -1175 402 324 2139 94 30 3 chr15 53108734 53109031 -48271490 - AluSq SINE Alu -8 305 1 256 289 106 0 chr15 53109537 53109679 -48270842 - L1M4 LINE L1 -934 5212 5056 260 229 52 52 chr15 53109688 53109784 -48270737 - L1M4 LINE L1 -1141 5005 4910 512 280 99 16 chr15 53109806 53110181 -48270340 - L1M4 LINE L1 -1363 4783 4378 828 326 80 10 chr15 53110232 53110646 -48269875 - LTR33 LTR ERVL -77 444 2 271 274 19 19 chr15 53110671 53110777 -48269744 - L1M4 LINE L1 -1794 4352 4247 7564 27 2 0 chr15 53110785 53112131 -48268390 - L1PA4 LINE L1 -3 6152 4807 230 210 253 43 chr15 53112305 53112491 -48268030 - L1ME4a LINE L1 0 6121 5897 619 250 14 7 chr15 53112597 53112741 -48267780 - MLT1D LTR MaLR -42 463 319 590 249 96 50 chr15 53112968 53113269 -48267252 - L1MEd LINE L1 -5262 857 543 4258 179 49 19 chr15 53113590 53114400 -48266121 + L1MB3 LINE L1 4934 5718 -465 186 43 0 0 chr15 53114400 53114423 -48266098 + (CA)n Simple_repeat Simple_repeat 2 24 0 4258 179 49 19 chr15 53114423 53114640 -48265881 + L1MB3 LINE L1 5718 6005 -178 2152 76 0 28 chr15 53114640 53114996 -48265525 - AluY SINE Alu 0 348 1 4258 179 49 19 chr15 53114996 53115132 -48265389 + L1MB3 LINE L1 6005 6135 -48 2433 64 0 0 chr15 53115138 53115444 -48265077 + AluY SINE Alu 1 306 0 21 0 0 0 chr15 53115444 53115465 -48265056 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr15 53116223 53116259 -48264262 + AT_rich Low_complexity Low_complexity 1 36 0 253 95 95 0 chr15 53116326 53116368 -48264153 + L2 LINE L2 3268 3313 0 24 0 0 0 chr15 53116632 53116656 -48263865 + AT_rich Low_complexity Low_complexity 1 24 0 2240 115 0 0 chr15 53116801 53117105 -48263416 - AluY SINE Alu -7 304 1 2696 25 0 25 chr15 53117125 53117444 -48263077 - AluY SINE Alu 0 311 1 394 305 86 25 chr15 53117739 53117936 -48262585 - MIR SINE MIR 0 262 54 2414 76 0 7 chr15 53118854 53119157 -48261364 + AluY SINE Alu 1 301 -10 677 257 39 12 chr15 53119335 53119620 -48260901 + LTR16A LTR ERVL 52 384 -66 928 169 19 0 chr15 53119620 53119774 -48260747 + THE1C LTR MaLR 1 157 -218 418 243 47 12 chr15 53119775 53119944 -48260577 + (ACATG)n Simple_repeat Simple_repeat 1 175 0 397 143 182 0 chr15 53119944 53120021 -48260500 + THE1C LTR MaLR 136 226 -149 6822 112 53 8 chr15 53120032 53121032 -48259489 + THE1C-int LTR MaLR 1 1045 -535 1180 86 11 11 chr15 53121030 53121205 -48259316 + THE1C-int LTR MaLR 1405 1579 -1 * 2589 131 3 3 chr15 53121207 53121581 -48258940 + THE1C LTR MaLR 2 375 0 306 229 0 0 chr15 53121582 53121643 -48258878 + LTR16A LTR ERVL 381 441 -9 183 42 0 0 chr15 53121988 53122012 -48258509 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1272 281 137 27 chr15 53122499 53123523 -48256998 - L2 LINE L2 -4 3309 2110 514 259 29 11 chr15 53123524 53123698 -48256823 - MER5B DNA MER1_type -1 177 1 630 190 25 16 chr15 53123717 53123838 -48256683 + FRAM SINE Alu 32 153 -23 491 287 117 20 chr15 53123867 53123997 -48256524 - L2 LINE L2 -1235 2079 1963 207 0 0 0 chr15 53123997 53124020 -48256501 + (GA)n Simple_repeat Simple_repeat 1 23 0 491 287 117 20 chr15 53124020 53124136 -48256385 - L2 LINE L2 -1351 1963 1809 337 302 94 50 chr15 53124289 53124448 -48256073 - L2 LINE L2 -3 3269 3104 205 352 0 19 chr15 53124525 53124633 -48255888 + L2 LINE L2 2617 2722 -592 1805 158 3 14 chr15 53124969 53125254 -48255267 + AluJo SINE Alu 1 282 -30 1749 155 0 4 chr15 53125272 53125536 -48254985 + AluJo SINE Alu 40 302 -10 811 219 104 81 chr15 53128441 53128798 -48251723 - MLT1A1 LTR MaLR 0 365 1 250 309 63 78 chr15 53128933 53129202 -48251319 + L2 LINE L2 3004 3268 -4 1487 168 8 37 chr15 53134264 53134532 -48245989 + AluJo SINE Alu 37 296 -16 186 224 0 0 chr15 53134970 53135019 -48245502 + (CA)n Simple_repeat Simple_repeat 2 50 0 11742 181 72 20 chr15 53135366 53138487 -48242034 + L1M3f LINE L1 3 3948 -2380 659 232 8 0 chr15 53138487 53138612 -48241909 + FLAM_A SINE Alu 2 127 -6 11742 181 72 20 chr15 53138612 53139902 -48240619 + L1M3f LINE L1 3948 5170 -1158 8109 219 81 44 chr15 53139909 53140013 -48240508 + L1PA12 LINE L1 1 100 -7484 383 22 0 0 chr15 53140013 53140059 -48240462 - MADE1 DNA Mariner -34 46 1 8109 219 81 44 chr15 53140059 53141564 -48238957 + L1PA12 LINE L1 100 1547 -6037 1954 125 87 32 chr15 53141564 53141909 -48238612 - THE1B LTR MaLR 0 364 1 8109 219 81 44 chr15 53141909 53144537 -48235984 + L1PA12 LINE L1 1547 4159 -3425 27480 35 2 0 chr15 53144556 53148628 -48231893 - L1PA4 LINE L1 -4 6151 2073 1607 83 0 0 chr15 53148625 53148830 -48231691 + L1P LINE L1 1476 1680 -4466 * 736 103 0 9 chr15 53148816 53148923 -48231598 - L1P LINE L1 -4565 1581 1476 * 636 99 0 10 chr15 53148920 53149021 -48231500 + L1P LINE L1 2073 2172 -3974 * 243 327 27 27 chr15 53151002 53151112 -48229409 + MIR3 SINE MIR 91 200 -8 849 228 23 1 chr15 53151644 53151868 -48228653 - L1M LINE L1 -782 5364 5155 1611 175 4 8 chr15 53152793 53153061 -48227460 - AluJo SINE Alu -39 273 7 1503 157 51 8 chr15 53153473 53153728 -48226793 - AluJb SINE Alu -46 266 1 211 342 13 0 chr15 53153880 53153956 -48226565 - L2 LINE L2 -11 3302 3226 619 242 66 77 chr15 53154320 53154684 -48225837 + MLT1A2 LTR MaLR 2 361 -13 2078 130 3 13 chr15 53155401 53155709 -48224812 - AluSx SINE Alu -7 305 1 220 258 61 15 chr15 53156161 53156227 -48224294 - MIR SINE MIR -85 123 55 255 252 0 103 chr15 53156512 53156619 -48223902 + MIR SINE MIR 89 184 -78 361 301 0 0 chr15 53156729 53156822 -48223699 - MIR SINE MIR -57 205 113 313 287 55 27 chr15 53156900 53157140 -48223381 + MIR SINE MIR 12 256 -6 315 296 41 0 chr15 53157605 53157703 -48222818 + MIR SINE MIR 88 189 -73 219 69 0 0 chr15 53158305 53158334 -48222187 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2766 73 0 22 chr15 53158417 53158787 -48221734 + L1PA7 LINE L1 5792 6153 -1 352 276 88 0 chr15 53158866 53159036 -48221485 - MER5A DNA MER1_type 0 189 5 651 159 32 16 chr15 53162047 53162173 -48218348 + L1PA13 LINE L1 5995 6122 -41 269 189 0 38 chr15 53162188 53162241 -48218280 + L1PA13 LINE L1 6072 6122 -41 269 189 0 38 chr15 53162222 53162275 -48218246 + L1PA13 LINE L1 6072 6122 -41 251 208 0 38 chr15 53162256 53162309 -48218212 + L1PA13 LINE L1 6072 6122 -41 * 230 226 0 38 chr15 53162290 53162343 -48218178 + L1PA13 LINE L1 6072 6122 -41 * 248 208 0 38 chr15 53162392 53162445 -48218076 + L1PA13 LINE L1 6072 6122 -41 248 208 0 38 chr15 53162426 53162479 -48218042 + L1PA13 LINE L1 6072 6122 -41 * 289 217 43 29 chr15 53162460 53162529 -48217992 + L1PA13 LINE L1 6072 6141 -22 251 212 0 61 chr15 53162515 53162581 -48217940 + L1PA13 LINE L1 6061 6122 -41 * 248 208 0 38 chr15 53162562 53162615 -48217906 + L1PA13 LINE L1 6072 6122 -41 * 289 217 43 29 chr15 53162596 53162665 -48217856 + L1PA13 LINE L1 6072 6141 -22 231 159 0 45 chr15 53162639 53162683 -48217838 + L1PA13 LINE L1 6081 6122 -41 * 271 197 0 61 chr15 53162651 53162717 -48217804 + L1PA13 LINE L1 6061 6122 -41 230 226 0 38 chr15 53162868 53162921 -48217600 + L1PA13 LINE L1 6072 6122 -41 * 289 217 43 29 chr15 53162902 53162971 -48217550 + L1PA13 LINE L1 6072 6141 -22 271 197 0 61 chr15 53162957 53163023 -48217498 + L1PA13 LINE L1 6061 6122 -41 * 241 211 0 39 chr15 53163004 53163056 -48217465 + L1PA13 LINE L1 6072 6121 -42 * 240 226 0 38 chr15 53163038 53163091 -48217430 + L1PA13 LINE L1 6072 6122 -41 * 251 208 0 38 chr15 53163072 53163125 -48217396 + L1PA13 LINE L1 6072 6122 -41 426 125 62 25 chr15 53163149 53163229 -48217292 + L1PA13 LINE L1 6081 6163 0 2391 133 14 0 chr15 53164141 53164509 -48216012 - MER83C LTR ERV1 0 373 1 1559 94 5 9 chr15 53165438 53165650 -48214871 - THE1B LTR MaLR -153 211 1 2219 205 61 0 chr15 53165650 53166158 -48214363 + L1MB3 LINE L1 5645 6183 0 863 212 86 71 chr15 53169217 53169599 -48210922 - MLT1B LTR MaLR -2 388 1 304 200 55 0 chr15 53169921 53170031 -48210490 + (CACAG)n Simple_repeat Simple_repeat 4 119 0 624 193 6 17 chr15 53170919 53171100 -48209421 + (CAT)n Simple_repeat Simple_repeat 1 179 0 207 114 0 0 chr15 53171117 53171152 -48209369 + (CAT)n Simple_repeat Simple_repeat 2 36 0 659 197 6 0 chr15 53171199 53171377 -48209144 + (CAT)n Simple_repeat Simple_repeat 1 179 0 225 343 9 19 chr15 53171639 53171747 -48208774 + MIR SINE MIR 74 180 -82 272 355 20 13 chr15 53171764 53171916 -48208605 - MIR SINE MIR -108 154 2 315 319 17 0 chr15 53172552 53172668 -48207853 + L1ME LINE L1 5465 5582 -582 800 127 0 0 chr15 53172668 53172778 -48207743 + AluSq/x SINE Alu 1 110 -203 4083 213 56 17 chr15 53172880 53173602 -48206919 - L1 LINE L1 -1022 5124 4351 2340 84 0 14 chr15 53173602 53173899 -48206622 - AluY SINE Alu -18 293 1 4083 213 56 17 chr15 53173899 53174182 -48206339 - L1 LINE L1 -1795 4351 4080 23 33 0 0 chr15 53176688 53176718 -48203803 + AT_rich Low_complexity Low_complexity 1 30 0 3296 17 0 0 chr15 53176725 53177213 -48203308 - L1PA3 LINE L1 -657 5498 5011 4472 16 0 0 chr15 53177213 53177708 -48202813 + L1PA3 LINE L1 5506 6000 -155 190 29 88 0 chr15 53178459 53178493 -48202028 + T-rich Low_complexity Low_complexity 2 38 0 427 240 39 16 chr15 53179471 53179495 -48201026 - L1MC1 LINE L1 -6 6327 6305 3303 110 31 90 chr15 53179495 53179642 -48200879 - MER4A LTR ERV1 0 600 446 2328 75 0 0 chr15 53179642 53179947 -48200574 - AluY SINE Alu 0 307 3 3303 110 31 90 chr15 53179947 53180433 -48200088 - MER4A LTR ERV1 -154 446 3 427 240 39 16 chr15 53180433 53180537 -48199984 - L1MC1 LINE L1 -28 6305 6196 311 334 93 45 chr15 53181014 53181741 -48198780 + L2 LINE L2 649 1410 -1904 411 69 17 0 chr15 53181748 53181806 -48198715 + Alu SINE Alu 2 60 -258 233 284 0 34 chr15 53182669 53182757 -48197764 + L2 LINE L2 3185 3269 -3 419 210 10 0 chr15 53183472 53183572 -48196949 + GA-rich Low_complexity Low_complexity 1 101 0 1265 158 27 0 chr15 53183961 53184182 -48196339 + MER50 LTR ERV1 22 248 -486 * 1747 153 9 38 chr15 53184176 53184496 -48196025 + MER50 LTR ERV1 397 707 -27 1804 151 16 13 chr15 53184527 53184831 -48195690 - AluJb SINE Alu -7 305 1 211 248 69 40 chr15 53185567 53185668 -48194853 + MER5A DNA MER1_type 59 162 -27 574 69 0 0 chr15 53186405 53186477 -48194044 - L1P LINE L1 -4599 1547 1476 * 814 30 0 0 chr15 53186474 53186574 -48193947 + L1P LINE L1 2073 2172 -3974 16064 75 8 0 chr15 53186574 53188642 -48191879 - L1P LINE L1 -4061 2085 1 13014 167 8 9 chr15 53188641 53189105 -48191416 + L1P LINE L1 2714 3177 -2969 * 2334 94 7 7 chr15 53189105 53189414 -48191107 + AluY SINE Alu 1 309 -2 13014 167 8 9 chr15 53189414 53191266 -48189255 + L1P LINE L1 3177 5029 -1117 * 13134 187 18 75 chr15 53191263 53196584 -48183937 + L1P4 LINE L1 1222 6175 -694 499 309 44 31 chr15 53196579 53197224 -48183297 + L1ME LINE L1 4934 5557 -605 * 23 0 0 0 chr15 53199456 53199479 -48181042 + AT_rich Low_complexity Low_complexity 1 23 0 405 296 76 22 chr15 53199977 53200200 -48180321 - MARNA DNA Mariner -166 420 186 943 184 134 20 chr15 53201013 53201214 -48179307 + MER58A DNA MER1_type 1 224 0 228 356 110 7 chr15 53201618 53201764 -48178757 - MIR3 SINE MIR -11 197 37 449 270 100 10 chr15 53201806 53202006 -48178515 - LTR33 LTR ERVL 0 521 304 1642 207 12 18 chr15 53202508 53202846 -48177675 - MLT1E3 LTR MaLR 0 624 289 730 144 19 3 chr15 53202874 53203046 -48177475 - MLT1E1 LTR MaLR -424 230 5 21 0 0 0 chr15 53203144 53203165 -48177356 + AT_rich Low_complexity Low_complexity 1 21 0 268 206 124 84 chr15 53204965 53205107 -48175414 - MLT1L LTR MaLR -304 207 49 1073 229 47 0 chr15 53205107 53205321 -48175200 - MER58A DNA MER1_type 0 224 1 268 206 124 84 chr15 53205321 53205370 -48175151 - MLT1L LTR MaLR -462 49 3 7365 112 67 7 chr15 53207614 53208775 -48171746 + Tigger3b DNA MER2_type 1 1231 0 1769 178 0 32 chr15 53209859 53210174 -48170347 + AluJb SINE Alu 1 305 -7 219 282 109 18 chr15 53211858 53211968 -48168553 + MIR SINE MIR 72 191 -71 234 91 0 0 chr15 53212901 53212934 -48167587 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 8242 102 99 30 chr15 53212949 53214226 -48166295 + SVA Other Other 2 1366 -20 7450 31 0 13 chr15 53214386 53214591 -48165930 + L1PA4 LINE L1 5197 5403 -752 2433 24 0 17 chr15 53214591 53214878 -48165643 + AluY SINE Alu 28 309 -2 7450 31 0 13 chr15 53214878 53215640 -48164881 + L1PA4 LINE L1 5403 6152 -3 23 0 0 0 chr15 53215640 53215663 -48164858 + AT_rich Low_complexity Low_complexity 1 23 0 203 175 0 0 chr15 53215768 53215808 -48164713 + (TA)n Simple_repeat Simple_repeat 2 41 0 235 236 99 94 chr15 53216401 53216592 -48163929 - MLT1J LTR MaLR -112 399 208 5546 206 135 48 chr15 53216598 53218453 -48162068 - L1MCa LINE L1 -4392 2034 18 3337 210 76 40 chr15 53218448 53218543 -48161978 - L1M4 LINE L1 -745 5401 5311 * 2130 110 0 17 chr15 53218543 53218843 -48161678 - AluSx SINE Alu -15 297 3 3337 210 76 40 chr15 53218843 53219856 -48160665 - L1M4 LINE L1 -835 5311 4253 393 301 126 15 chr15 53221782 53221937 -48158584 + MIR SINE MIR 38 221 -41 2245 115 0 0 chr15 53221937 53222242 -48158279 + AluSx SINE Alu 1 305 -7 393 301 126 15 chr15 53222242 53222285 -48158236 + MIR SINE MIR 221 258 -4 207 0 0 0 chr15 53222764 53222787 -48157734 + (TA)n Simple_repeat Simple_repeat 2 24 0 1438 136 12 0 chr15 53223640 53223891 -48156630 - L1MA5A LINE L1 -3 6294 6041 503 309 144 0 chr15 53223998 53224192 -48156329 - MIR SINE MIR -11 251 30 269 231 74 37 chr15 53224261 53224369 -48156152 - L1MA10 LINE L1 0 6334 6223 922 187 7 1 chr15 53224418 53224603 -48155918 - L1ME1 LINE L1 -290 5882 5693 4464 164 38 14 chr15 53224604 53225614 -48154907 + L1MB2 LINE L1 5105 6143 -28 244 169 0 123 chr15 53225628 53225693 -48154828 + L1ME3A LINE L1 5962 6018 -152 391 307 74 52 chr15 53226351 53226582 -48153939 - MIR SINE MIR -6 256 21 200 171 0 0 chr15 53227445 53227480 -48153041 + MER5B DNA MER1_type 1 35 -143 1657 212 80 26 chr15 53227487 53227761 -48152760 + MLT2B1 LTR ERVL 6 311 -209 2418 161 37 37 chr15 53227761 53228222 -48152299 - LOR1b LTR ERV1 0 461 1 1657 212 80 26 chr15 53228222 53228362 -48152159 + MLT2B1 LTR ERVL 311 442 -78 340 302 22 17 chr15 53228382 53228561 -48151960 + (TA)n Simple_repeat Simple_repeat 1 180 0 11015 221 53 21 chr15 53228585 53232232 -48148289 - L1MA9 LINE L1 -234 6078 2300 1772 163 38 20 chr15 53232233 53232577 -48147944 + MER65A LTR ERV1 1 350 -95 8425 119 4 46 chr15 53232579 53233391 -48147130 + HSMAR1 DNA Mariner 27 765 -522 2187 125 3 0 chr15 53233391 53233695 -48146826 - AluSq SINE Alu -8 305 1 8425 119 4 46 chr15 53233695 53234196 -48146325 + HSMAR1 DNA Mariner 765 1285 -2 443 143 12 24 chr15 53234196 53234276 -48146245 + MER65A LTR ERV1 365 443 -2 834 258 22 9 chr15 53234312 53234537 -48145984 + MER65A-int LTR ERV1 36 263 -4608 36731 97 9 12 chr15 53234550 53240217 -48140304 + L1PA6 LINE L1 11 5657 -497 2024 74 4 4 chr15 53240317 53240587 -48139934 + L1PA6 LINE L1 5880 6149 -5 1084 243 30 58 chr15 53240651 53241013 -48139508 + MER65A-int LTR ERV1 357 708 -4163 13324 202 26 8 chr15 53241100 53246424 -48134097 + L1PB1 LINE L1 105 5751 -1111 2219 56 9 4 chr15 53246426 53246734 -48133787 - L1PA4 LINE L1 -44 6124 5793 * 3604 122 20 5 chr15 53246717 53247420 -48133101 + L1PA4 LINE L1 5794 6507 -360 518 165 0 0 chr15 53247474 53247565 -48132956 + L1PB1 LINE L1 6498 6588 -279 629 13 0 0 chr15 53247565 53247644 -48132877 - L1PA2 LINE L1 0 6155 6077 2011 220 84 49 chr15 53247780 53248447 -48132074 + LTR8 LTR ERV1 16 691 0 1499 161 30 13 chr15 53248447 53248897 -48131624 - L1M3 LINE L1 -628 5555 5099 362 253 0 0 chr15 53248904 53248987 -48131534 + L1M4 LINE L1 4851 4933 -1213 841 229 93 0 chr15 53249928 53250133 -48130388 + MER58A DNA MER1_type 1 224 0 1825 159 30 3 chr15 53253016 53253318 -48127203 - AluJo SINE Alu 0 312 3 223 300 14 0 chr15 53253448 53253518 -48127003 + (TA)n Simple_repeat Simple_repeat 2 72 0 2280 93 0 10 chr15 53254018 53254320 -48126201 - AluSg SINE Alu -11 299 1 556 79 0 0 chr15 53254571 53254647 -48125874 - HY3 scRNA scRNA -1 100 25 1004 131 15 45 chr15 53254829 53254976 -48125545 + MER65A LTR ERV1 253 394 -51 2411 63 3 13 chr15 53254976 53255277 -48125244 - AluY SINE Alu -13 298 1 1004 131 15 45 chr15 53255277 53255328 -48125193 + MER65A LTR ERV1 394 445 0 2643 237 73 66 chr15 53255328 53256106 -48124415 - L1 LINE L1 -3844 2366 1594 1916 139 3 14 chr15 53256106 53256400 -48124121 - AluSx SINE Alu -17 295 5 2643 237 73 66 chr15 53256400 53256758 -48123763 - L1 LINE L1 -4616 1594 1240 1451 189 37 37 chr15 53256758 53257054 -48123467 - AluJb SINE Alu -16 296 1 2643 237 73 66 chr15 53257054 53257218 -48123303 - L1 LINE L1 -4970 1240 1079 337 164 0 0 chr15 53257218 53257273 -48123248 + MER87 LTR ERV1 91 145 -396 2643 237 73 66 chr15 53257273 53258298 -48122223 - L1 LINE L1 -5131 1079 4 900 180 31 36 chr15 53258325 53258547 -48121974 - L1M3 LINE L1 -385 5786 5566 438 223 58 0 chr15 53258666 53258769 -48121752 + L1M1 LINE L1 21 129 -7436 14188 173 157 17 chr15 53258773 53259983 -48120538 + L1M1 LINE L1 12 1051 -6514 2326 139 111 5 chr15 53259983 53260370 -48120151 - MSTA LTR MaLR 0 428 1 14188 173 157 17 chr15 53260370 53263589 -48116932 + L1M1 LINE L1 1051 5074 -2491 21 0 0 0 chr15 53263763 53263784 -48116737 + AT_rich Low_complexity Low_complexity 1 21 0 693 228 0 0 chr15 53263785 53263921 -48116600 - FAM SINE Alu -19 166 31 349 241 267 11 chr15 53263923 53264189 -48116332 - L1MEc LINE L1 -4619 1596 1263 2660 237 108 22 chr15 53264198 53264434 -48116087 - L1MEc LINE L1 -5169 1227 1013 1697 169 0 53 chr15 53264434 53264754 -48115767 - AluJb SINE Alu -9 303 1 2660 237 108 22 chr15 53264754 53265615 -48114906 - L1MEc LINE L1 -5383 1013 34 333 256 67 11 chr15 53265791 53265881 -48114640 + MLT1I LTR MaLR 313 407 -2 272 347 78 25 chr15 53266077 53266319 -48114202 - MLT1I LTR MaLR -150 259 5 459 200 33 0 chr15 53267138 53267228 -48113293 + MER99 DNA DNA 2 94 -734 21 0 0 0 chr15 53267617 53267638 -48112883 + AT_rich Low_complexity Low_complexity 1 21 0 3065 193 22 3 chr15 53267861 53268448 -48112073 + MER99 DNA DNA 230 827 -1 2237 68 17 3 chr15 53268484 53268778 -48111743 + AluY SINE Alu 3 300 -11 2102 111 0 36 chr15 53268994 53269300 -48111221 + AluSx SINE Alu 1 295 -17 627 310 77 17 chr15 53269552 53269852 -48110669 - MLT1I LTR MaLR 0 409 92 23 0 0 0 chr15 53269895 53269918 -48110603 + AT_rich Low_complexity Low_complexity 1 23 0 2377 94 0 3 chr15 53270103 53270410 -48110111 + AluSq SINE Alu 1 306 -7 1796 131 28 3 chr15 53270410 53270693 -48109828 + AluSx SINE Alu 1 290 -22 717 204 74 0 chr15 53270882 53271044 -48109477 - MER58A DNA MER1_type -8 216 43 2182 102 10 3 chr15 53271109 53271403 -48109118 + AluSq SINE Alu 1 296 -17 2199 101 3 3 chr15 53271452 53271748 -48108773 + AluSp SINE Alu 1 296 -17 22 0 0 0 chr15 53272067 53272089 -48108432 + AT_rich Low_complexity Low_complexity 1 22 0 3291 131 132 19 chr15 53272341 53272809 -48107712 - Tigger3(Golem) DNA MER2_type -1 3027 2459 1698 174 0 17 chr15 53272809 53273097 -48107424 - AluJb SINE Alu -29 283 1 3291 131 132 19 chr15 53273097 53273302 -48107219 - Tigger3(Golem) DNA MER2_type -569 2459 2278 520 151 161 0 chr15 53273294 53273387 -48107134 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 7945 19 1 1 chr15 53273583 53275130 -48105391 - L1PA3 LINE L1 -151 6004 4458 2117 74 0 7 chr15 53275135 53275431 -48105090 + L1PB1 LINE L1 5858 6151 0 386 234 8 68 chr15 53275459 53275484 -48105037 + MER65A-int LTR ERV1 702 727 -4295 283 254 18 88 chr15 53275484 53275598 -48104923 + LTR57-int LTR ERVL 302 407 -4936 386 234 8 68 chr15 53275598 53275628 -48104893 + MER65A-int LTR ERV1 727 967 -4055 6396 214 67 66 chr15 53275655 53277699 -48102822 + MER65A-int LTR ERV1 867 2908 -1963 2249 71 0 0 chr15 53277699 53278014 -48102507 + AluY SINE Alu 1 315 0 6396 214 67 66 chr15 53278014 53278126 -48102395 + MER65A-int LTR ERV1 2908 3018 -1853 316 153 0 0 chr15 53278126 53278185 -48102336 + L1MA1 LINE L1 6240 6298 -4 6396 214 67 66 chr15 53278185 53278384 -48102137 + MER65A-int LTR ERV1 3018 3215 -1656 2105 112 0 26 chr15 53278384 53278696 -48101825 + AluSp SINE Alu 1 304 -9 6396 214 67 66 chr15 53278696 53281872 -48098649 + MER65A-int LTR ERV1 3215 4869 -2 1716 190 3 7 chr15 53281872 53282162 -48098359 + AluJo SINE Alu 3 291 -21 282 143 0 0 chr15 53282188 53282237 -48098284 + MER65A LTR ERV1 5 53 -392 1637 101 13 8 chr15 53282241 53282478 -48098043 + AluSq SINE Alu 5 242 -71 32 0 0 0 chr15 53283604 53283636 -48096885 + AT_rich Low_complexity Low_complexity 1 32 0 271 274 265 20 chr15 53284066 53284270 -48096251 - MIR SINE MIR -2 260 7 355 300 61 76 chr15 53284297 53284560 -48095961 + HAL1 LINE L1 16 274 -2233 2179 117 7 0 chr15 53284720 53285018 -48095503 - AluSx SINE Alu -12 300 1 949 128 0 0 chr15 53285021 53285154 -48095367 - AluSq/x SINE Alu -179 133 1 354 389 75 13 chr15 53285154 53285393 -48095128 + HAL1 LINE L1 443 696 -1811 1697 164 3 39 chr15 53285404 53285715 -48094806 - AluJo SINE Alu -12 300 1 2475 198 116 21 chr15 53285944 53287014 -48093507 + Charlie1 DNA MER1_type 1444 2668 -93 263 297 0 0 chr15 53287037 53287101 -48093420 - MER91B DNA MER1_type -126 64 1 1593 267 106 72 chr15 53287102 53288397 -48092124 + HAL1 LINE L1 775 2113 -394 328 130 0 0 chr15 53288436 53288482 -48092039 - MER96B DNA MER1_type? -182 235 190 719 182 8 0 chr15 53288525 53288657 -48091864 - FLAM_C SINE Alu 0 133 1 371 282 66 17 chr15 53290030 53290211 -48090310 + L1MEc LINE L1 1748 1937 -4459 * 505 231 48 82 chr15 53290204 53290472 -48090049 + L1MEc LINE L1 3328 3586 -2629 21 36 0 0 chr15 53291810 53291838 -48088683 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr15 53293243 53293265 -48087256 + AT_rich Low_complexity Low_complexity 1 22 0 2353 87 0 3 chr15 53293781 53294081 -48086440 - AluSq SINE Alu -14 299 1 1665 145 10 51 chr15 53294435 53294746 -48085775 + AluJo SINE Alu 3 300 -12 207 343 133 0 chr15 53294910 53295015 -48085506 - L2 LINE L2 -15 3257 3139 293 328 105 51 chr15 53295465 53295761 -48084760 - L2 LINE L2 -701 2613 2302 1754 181 7 3 chr15 53295824 53296122 -48084399 - AluJb SINE Alu -13 299 1 315 318 132 16 chr15 53296234 53296363 -48084158 - MIR3 SINE MIR -10 198 55 208 325 128 20 chr15 53296365 53296568 -48083953 + L2 LINE L2 2514 2738 -576 1029 260 19 8 chr15 53296808 53297066 -48083455 + MIR SINE MIR 2 262 0 22 35 0 0 chr15 53298108 53298137 -48082384 + AT_rich Low_complexity Low_complexity 1 29 0 888 219 123 41 chr15 53299156 53299448 -48081073 + L2 LINE L2 2998 3313 0 234 200 0 60 chr15 53299872 53299922 -48080599 + MER2 DNA MER2_type 1 47 -298 511 246 120 24 chr15 53299989 53300156 -48080365 + MER2 DNA MER2_type 163 345 0 28 0 0 0 chr15 53301222 53301250 -48079271 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr15 53301298 53301321 -48079200 + AT_rich Low_complexity Low_complexity 1 23 0 309 250 110 0 chr15 53303045 53303145 -48077376 + MIR SINE MIR 34 144 -64 311 330 18 18 chr15 53303154 53303266 -48077255 - L2 LINE L2 -4 3268 3157 218 263 168 0 chr15 53303342 53303437 -48077084 - MIR SINE MIR -5 257 147 2059 84 7 4 chr15 53303522 53303796 -48076725 - AluSg SINE Alu -35 275 1 677 237 210 39 chr15 53304978 53305311 -48075210 - L2 LINE L2 0 3313 2924 3355 189 73 6 chr15 53305950 53306658 -48073863 + L1MB7 LINE L1 5429 6184 0 646 211 16 0 chr15 53307316 53307444 -48073077 - FLAM_A SINE Alu -3 130 1 207 0 0 0 chr15 53307468 53307491 -48073030 + (A)n Simple_repeat Simple_repeat 1 23 0 1271 155 148 55 chr15 53307662 53307972 -48072549 + MER44D DNA MER2_type 1 609 0 288 288 27 0 chr15 53308039 53308112 -48072409 + MER5A DNA MER1_type 112 186 -3 23 33 0 0 chr15 53308197 53308227 -48072294 + AT_rich Low_complexity Low_complexity 1 30 0 21 89 0 0 chr15 53308926 53308982 -48071539 + AT_rich Low_complexity Low_complexity 1 56 0 344 258 0 0 chr15 53308990 53309083 -48071438 + L1ME1 LINE L1 6070 6162 -4 211 244 0 0 chr15 53309292 53309337 -48071184 + L2 LINE L2 3269 3313 0 226 316 38 38 chr15 53310199 53310278 -48070243 - MIR SINE MIR -148 114 36 2193 88 7 23 chr15 53310836 53311141 -48069380 + AluSx SINE Alu 1 300 -12 1459 208 13 16 chr15 53311291 53311604 -48068917 + AluJb SINE Alu 1 312 0 254 227 0 0 chr15 53311958 53312024 -48068497 + L1MA6 LINE L1 6090 6155 -145 777 199 63 21 chr15 53312024 53312215 -48068306 + AluJo SINE Alu 109 307 -5 462 138 174 0 chr15 53312218 53312327 -48068194 + L1MA4A LINE L1 6170 6297 -6 251 273 41 41 chr15 53313611 53313732 -48066789 + MARNA DNA Mariner 293 413 -173 383 65 81 0 chr15 53313952 53314014 -48066507 + Alu SINE Alu 232 298 -2 29 28 0 0 chr15 53314041 53314077 -48066444 + AT_rich Low_complexity Low_complexity 1 36 0 2090 113 17 0 chr15 53314146 53314437 -48066084 + AluSx SINE Alu 1 296 -16 29 47 0 0 chr15 53314839 53314882 -48065639 + AT_rich Low_complexity Low_complexity 1 43 0 395 280 38 23 chr15 53316048 53316180 -48064341 + MIR SINE MIR 73 206 -56 189 121 0 0 chr15 53316220 53316253 -48064268 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1080 215 5 0 chr15 53317622 53317827 -48062694 + MER3 DNA MER1_type 1 206 -3 207 222 238 48 chr15 53317887 53318013 -48062508 - MIR3 SINE MIR -46 162 13 981 6 72 0 chr15 53318045 53318211 -48062310 + (TA)n Simple_repeat Simple_repeat 1 178 0 201 196 0 0 chr15 53318253 53318299 -48062222 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 1039 124 77 0 chr15 53318399 53318568 -48061953 - L1PA12 LINE L1 -15 6153 5972 5336 163 49 9 chr15 53318673 53319742 -48060779 + L1MA4 LINE L1 3635 4745 -1401 4663 148 43 19 chr15 53319743 53320949 -48059572 + L1MA4 LINE L1 5114 6305 0 921 216 73 9 chr15 53320953 53321185 -48059336 + L1MB5 LINE L1 5920 6166 -8 481 307 52 89 chr15 53321191 53321673 -48058848 - LTR67 LTR ERVL -68 489 26 371 272 171 27 chr15 53321730 53322098 -48058423 + L1MB4 LINE L1 4124 4544 -1602 211 307 167 0 chr15 53322374 53322488 -48058033 + MIR SINE MIR 104 236 -26 2074 123 0 0 chr15 53322686 53322971 -48057550 - AluSq SINE Alu -22 291 7 2068 190 39 12 chr15 53323841 53324256 -48056265 - MSTB LTR MaLR 0 426 1 35 83 0 0 chr15 53324308 53324392 -48056129 + AT_rich Low_complexity Low_complexity 1 84 0 400 286 138 22 chr15 53324395 53324706 -48055815 - L1M4 LINE L1 -1005 5141 4795 1507 154 55 22 chr15 53324766 53325039 -48055482 + AluJo SINE Alu 1 282 -30 10916 194 53 7 chr15 53325054 53327334 -48053187 - Cheshire DNA MER1_type -33 2387 2 2238 174 45 5 chr15 53328339 53328758 -48051763 + L1MB2 LINE L1 5654 6089 -82 320 191 0 0 chr15 53328741 53328804 -48051717 + L1MB4 LINE L1 4781 4843 -1303 * 441 130 83 56 chr15 53328819 53328927 -48051594 - L1MB4 LINE L1 0 6180 6070 * 5732 217 48 17 chr15 53328896 53329310 -48051211 - L1M4 LINE L1 -1346 4800 4401 2148 136 91 10 chr15 53329310 53329706 -48050815 - MSTA LTR MaLR 0 428 1 5732 217 48 17 chr15 53329706 53329919 -48050602 - L1M4 LINE L1 -1745 4401 4196 513 47 0 0 chr15 53329919 53329983 -48050538 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 5732 217 48 17 chr15 53329983 53330165 -48050356 - L1M4 LINE L1 -1950 4196 4021 1742 78 0 0 chr15 53330165 53330383 -48050138 - AluY SINE Alu -59 252 35 5732 217 48 17 chr15 53330383 53331057 -48049464 - L1M4 LINE L1 -2125 4021 3268 294 284 10 10 chr15 53331383 53331495 -48049026 + L1ME LINE L1 17 556 -5974 3505 237 56 39 chr15 53332132 53332808 -48047713 + L1ME LINE L1 917 1580 -4960 3309 169 40 29 chr15 53332808 53332891 -48047630 + L1MB4 LINE L1 5442 5523 -657 1917 150 142 8 chr15 53332891 53333285 -48047236 + MER83 LTR ERV1 1 447 -1 3309 169 40 29 chr15 53333285 53333931 -48046590 + L1MB4 LINE L1 5523 6179 -1 3505 237 56 39 chr15 53333931 53334054 -48046467 + L1ME LINE L1 1580 1699 -4841 1708 208 46 37 chr15 53334054 53334511 -48046010 + MER65C LTR ERV1 1 461 0 3505 237 56 39 chr15 53334511 53335122 -48045399 + L1ME LINE L1 1699 2316 -4224 1709 180 64 16 chr15 53335120 53335470 -48045051 + L1ME1 LINE L1 5542 5914 -252 * 3389 126 35 6 chr15 53335470 53336008 -48044513 + MER41C LTR ERV1 1 554 0 1709 180 64 16 chr15 53336008 53336045 -48044476 + L1ME1 LINE L1 5914 5948 -218 943 247 43 10 chr15 53336060 53336360 -48044161 + L1ME LINE L1 2880 3189 -3351 1274 201 49 7 chr15 53336362 53336646 -48043875 + L1ME LINE L1 5834 6129 -431 327 143 18 0 chr15 53336649 53336705 -48043816 - MLT1E3 LTR MaLR 0 624 568 2157 112 0 13 chr15 53336768 53337082 -48043439 + AluSx SINE Alu 1 310 -2 537 309 6 12 chr15 53337262 53337424 -48043097 + MIR SINE MIR 98 258 -4 3852 114 42 10 chr15 53338505 53339125 -48041396 + MER51C LTR ERV1 1 640 0 452 343 80 26 chr15 53339172 53339700 -48040821 + L1MEd LINE L1 530 1085 -5120 558 311 120 11 chr15 53339841 53340308 -48040213 + L1MEd LINE L1 1303 1820 -4576 232 214 18 18 chr15 53340449 53340505 -48040016 + L2 LINE L2 3258 3313 0 233 302 9 47 chr15 53340639 53340745 -48039776 + Charlie8 DNA MER1_type 156 257 -2160 329 240 16 62 chr15 53341063 53341192 -48039329 + Charlie8 DNA MER1_type 137 259 -2158 413 257 113 48 chr15 53341229 53341340 -48039181 + L1MEd LINE L1 1963 2065 -4150 2282 136 17 3 chr15 53341340 53341701 -48038820 - MER47A DNA MER2_type 0 366 1 413 257 113 48 chr15 53341701 53341881 -48038640 + L1MEd LINE L1 2065 2273 -3942 365 189 84 0 chr15 53341902 53341997 -48038524 + L1MEd LINE L1 2329 2431 -3784 10356 129 16 6 chr15 53342117 53344054 -48036467 - L1P4 LINE L1 -527 5641 3692 192 40 0 0 chr15 53344073 53344098 -48036423 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 269 312 0 13 chr15 53344115 53344192 -48036329 + MIR SINE MIR 175 250 -12 550 191 0 0 chr15 53344262 53344356 -48036165 - AluJb SINE Alu -17 295 202 1568 269 156 48 chr15 53344490 53345550 -48034971 + L2 LINE L2 2123 3309 -4 613 249 105 6 chr15 53345973 53346154 -48034367 + MIR SINE MIR 54 252 -10 35 24 0 0 chr15 53349111 53349153 -48031368 + AT_rich Low_complexity Low_complexity 1 42 0 518 261 126 55 chr15 53349213 53349412 -48031109 - MIR SINE MIR -24 238 26 2243 112 0 13 chr15 53349414 53349727 -48030794 - AluSx SINE Alu -3 309 1 21 0 0 0 chr15 53350509 53350530 -48029991 + AT_rich Low_complexity Low_complexity 1 21 0 1898 156 7 0 chr15 53351890 53352192 -48028329 - AluJb SINE Alu -8 304 1 26 30 0 0 chr15 53354331 53354364 -48026157 + AT_rich Low_complexity Low_complexity 1 33 0 228 321 50 36 chr15 53356268 53356757 -48023764 + HAL1b LINE L1 247 771 -577 257 0 30 0 chr15 53356757 53356790 -48023731 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 228 321 50 36 chr15 53356790 53356876 -48023645 + HAL1b LINE L1 771 854 -494 496 317 88 49 chr15 53357250 53357560 -48022961 + L1M4 LINE L1 2111 2407 -3739 2083 102 10 3 chr15 53357560 53357854 -48022667 - AluSx SINE Alu -16 296 1 496 317 88 49 chr15 53357854 53358155 -48022366 + L1M4 LINE L1 2407 2746 -3400 258 217 108 12 chr15 53358252 53358335 -48022186 + MIR SINE MIR 161 251 -11 302 269 92 17 chr15 53358808 53358927 -48021594 + L1MC4a LINE L1 5886 6013 -1795 2265 54 7 0 chr15 53359648 53359926 -48020595 + AluY SINE Alu 23 302 -9 30 89 0 0 chr15 53360203 53360282 -48020239 + AT_rich Low_complexity Low_complexity 1 79 0 22 0 0 0 chr15 53360327 53360349 -48020172 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr15 53360908 53360940 -48019581 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr15 53361081 53361104 -48019417 + AT_rich Low_complexity Low_complexity 1 23 0 2392 73 0 0 chr15 53361516 53361817 -48018704 + AluY SINE Alu 1 301 -10 181 343 75 45 chr15 53362238 53362305 -48018216 + MIR SINE MIR 18 86 -176 397 292 60 87 chr15 53362340 53362525 -48017996 + MIR SINE MIR 68 247 -15 43 47 0 0 chr15 53364674 53364738 -48015783 + AT_rich Low_complexity Low_complexity 1 64 0 438 20 0 0 chr15 53365705 53365756 -48014765 + (CA)n Simple_repeat Simple_repeat 2 52 0 948 205 186 16 chr15 53366068 53366375 -48014146 + L1MD3 LINE L1 7625 7983 -12 307 251 177 89 chr15 53366415 53366483 -48014038 + L1ME LINE L1 5551 5612 -509 216 0 0 0 chr15 53366483 53366507 -48014014 + (TG)n Simple_repeat Simple_repeat 1 24 0 1955 149 0 0 chr15 53366507 53366789 -48013732 - AluSq SINE Alu -31 282 1 307 251 177 89 chr15 53366789 53366922 -48013599 + L1ME LINE L1 5611 5771 -350 2319 102 0 0 chr15 53366950 53367244 -48013277 - AluSc SINE Alu -15 294 1 434 355 25 10 chr15 53367758 53367958 -48012563 - MIR SINE MIR -58 204 2 320 286 31 31 chr15 53368158 53368256 -48012265 + MER5B DNA MER1_type 3 100 -78 2347 88 0 0 chr15 53368607 53368901 -48011620 - AluSx SINE Alu -18 294 1 3751 192 65 10 chr15 53369042 53369929 -48010592 - Charlie1a DNA MER1_type 0 1455 520 2207 182 85 74 chr15 53369934 53370512 -48010009 + MLT1E LTR MaLR 1 584 -9 23 33 0 0 chr15 53370535 53370565 -48009956 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr15 53370803 53370825 -48009696 + AT_rich Low_complexity Low_complexity 1 22 0 2003 198 54 40 chr15 53371060 53371561 -48008960 - Charlie1a DNA MER1_type -946 509 2 808 293 7 4 chr15 53371639 53371869 -48008652 + MIR SINE MIR 28 260 -2 22 56 0 0 chr15 53372648 53372684 -48007837 + AT_rich Low_complexity Low_complexity 1 36 0 450 0 0 0 chr15 53374327 53374377 -48006144 + (CA)n Simple_repeat Simple_repeat 2 51 0 1905 156 3 0 chr15 53374988 53375292 -48005229 + AluJb SINE Alu 1 305 0 1977 140 0 10 chr15 53376119 53376412 -48004109 + AluSx SINE Alu 5 294 -18 273 346 126 22 chr15 53376841 53377023 -48003498 + MIR SINE MIR 21 221 -41 2061 135 12 93 chr15 53377381 53377612 -48002909 + MLT1B LTR MaLR 4 187 -203 2064 129 0 10 chr15 53377612 53377921 -48002600 + AluSx SINE Alu 4 309 -3 2061 135 12 93 chr15 53377921 53378110 -48002411 + MLT1B LTR MaLR 187 390 0 25 31 0 0 chr15 53378209 53378241 -48002280 + AT_rich Low_complexity Low_complexity 1 32 0 304 298 50 25 chr15 53379194 53379315 -48001206 - L2 LINE L2 0 3272 3149 7359 45 1 0 chr15 53380007 53381436 -47999085 + L1PA5 LINE L1 4724 6153 -1 2144 81 6 56 chr15 53381540 53381863 -47998658 + AluSx SINE Alu 4 310 -2 546 265 37 90 chr15 53382510 53382755 -47997766 + MIR SINE MIR 21 252 -10 2039 113 13 10 chr15 53382800 53383100 -47997421 + AluSx SINE Alu 1 301 -11 1653 141 100 25 chr15 53383171 53383491 -47997030 - MER7A DNA MER2_type -2 344 3 875 157 94 13 chr15 53383776 53383935 -47996586 + AluJb SINE Alu 1 172 -140 21 0 0 0 chr15 53384048 53384069 -47996452 + AT_rich Low_complexity Low_complexity 1 21 0 2261 108 3 0 chr15 53384117 53384414 -47996107 - AluSx SINE Alu -12 300 3 21 36 0 0 chr15 53387097 53387125 -47993396 + AT_rich Low_complexity Low_complexity 1 28 0 548 371 37 48 chr15 53387172 53387192 -47993329 - L2 LINE L2 -2 3270 3251 1410 171 93 25 chr15 53387192 53387514 -47993007 - MER2 DNA MER2_type 0 344 1 548 371 37 48 chr15 53387514 53388051 -47992470 - L2 LINE L2 -21 3251 2713 966 296 181 18 chr15 53388150 53388653 -47991868 - MLT1K LTR MaLR -2 586 2 278 294 0 81 chr15 53388690 53388826 -47991695 + L3 LINE CR1 1187 1311 -266 30 45 0 0 chr15 53388934 53388978 -47991543 + AT_rich Low_complexity Low_complexity 1 44 0 375 263 34 17 chr15 53389013 53389131 -47991390 - MIR SINE MIR -58 204 85 292 283 113 48 chr15 53389366 53389596 -47990925 + MLT1L LTR MaLR 161 405 -210 477 283 83 45 chr15 53389745 53389983 -47990538 + MIR SINE MIR 17 259 -3 23 0 0 0 chr15 53390075 53390098 -47990423 + AT_rich Low_complexity Low_complexity 1 23 0 440 128 0 13 chr15 53390429 53390507 -47990014 - AluS SINE Alu -233 77 1 1458 251 71 11 chr15 53390508 53390958 -47989563 + L1MC4a LINE L1 5513 5989 -1819 591 182 67 24 chr15 53392065 53392230 -47988291 - Looper DNA T2_type 0 1558 1387 4027 167 40 36 chr15 53393080 53393163 -47987358 - Looper DNA T2_type -172 1386 1305 2160 124 42 17 chr15 53393163 53393519 -47987002 - MER47A DNA MER2_type -1 365 1 4027 167 40 36 chr15 53393519 53393884 -47986637 - Looper DNA T2_type -253 1305 943 1897 123 42 7 chr15 53393884 53394169 -47986352 + AluJo SINE Alu 1 295 -17 4027 167 40 36 chr15 53394169 53394589 -47985932 - Looper DNA T2_type -615 943 513 727 271 75 59 chr15 53394599 53394723 -47985798 + MER34 LTR ERV1 26 147 -395 2155 99 38 0 chr15 53394723 53395016 -47985505 - AluSq SINE Alu -9 304 1 727 271 75 59 chr15 53395016 53395400 -47985121 + MER34 LTR ERV1 147 542 0 1596 187 99 59 chr15 53395401 53395894 -47984627 - Looper DNA T2_type -1043 515 3 1522 23 0 0 chr15 53396055 53396231 -47984290 + L1PA5 LINE L1 5978 6153 -1 309 26 0 0 chr15 53396301 53396339 -47984182 + (CA)n Simple_repeat Simple_repeat 1 38 0 2390 158 11 21 chr15 53396577 53397045 -47983476 - L1MB8 LINE L1 0 6178 5716 222 116 0 0 chr15 53398396 53398439 -47982082 + (TTTTTG)n Simple_repeat Simple_repeat 1 43 0 2013 133 48 0 chr15 53398443 53398736 -47981785 - AluSx SINE Alu -5 307 1 830 158 0 8 chr15 53398790 53398923 -47981598 - FLAM_A SINE Alu -1 132 1 363 183 48 0 chr15 53399937 53400063 -47980458 + (TA)n Simple_repeat Simple_repeat 2 133 0 1960 152 5 76 chr15 53400235 53400283 -47980238 + L1MB3 LINE L1 5782 5832 -351 2581 39 0 7 chr15 53400283 53400590 -47979931 + AluY SINE Alu 1 305 -6 1960 152 5 76 chr15 53400590 53400961 -47979560 + L1MB3 LINE L1 5832 6171 -12 1134 143 0 0 chr15 53401010 53401171 -47979350 + FRAM SINE Alu 1 159 -17 890 268 113 35 chr15 53401308 53401794 -47978727 + HAL1b LINE L1 61 584 -764 450 207 44 30 chr15 53401873 53402008 -47978513 + L1MC/D LINE L1 5299 5435 -2373 275 152 22 0 chr15 53402008 53402054 -47978467 + Alu SINE Alu 1 47 -261 267 276 32 32 chr15 53402220 53402343 -47978178 + L3 LINE CR1 1295 1417 -160 1895 170 49 85 chr15 53403554 53404002 -47976519 + MSTB1 LTR MaLR 1 432 0 14471 122 20 35 chr15 53404089 53405384 -47975137 - Tigger1 DNA MER2_type 0 2418 1176 1822 149 0 28 chr15 53405384 53405673 -47974848 - AluSx SINE Alu -30 282 2 14471 122 20 35 chr15 53405673 53406831 -47973690 - Tigger1 DNA MER2_type -1242 1176 2 603 141 138 100 chr15 53406868 53406950 -47973571 + L1MB5 LINE L1 5694 5771 -403 5902 23 0 0 chr15 53406950 53407633 -47972888 + L1PA3 LINE L1 5461 6143 -12 603 141 138 100 chr15 53407633 53407957 -47972564 + L1MB5 LINE L1 5771 6174 0 2573 164 10 2 chr15 53408202 53408616 -47971905 - MER47B DNA MER2_type -1 417 1 205 299 46 46 chr15 53409025 53409112 -47971409 + MIR SINE MIR 110 196 -66 530 272 65 26 chr15 53410561 53410888 -47969633 + L1MC5 LINE L1 7195 7448 -360 1866 156 0 13 chr15 53410920 53411227 -47969294 + AluJb SINE Alu 2 304 -8 266 286 82 60 chr15 53411308 53411490 -47969031 + L1MC4 LINE L1 7770 7955 -87 612 203 39 0 chr15 53411590 53411718 -47968803 + FLAM_A SINE Alu 1 133 0 284 252 49 65 chr15 53411823 53411946 -47968575 + MIR SINE MIR 24 144 -64 24 0 0 0 chr15 53413128 53413152 -47967369 + GC_rich Low_complexity Low_complexity 1 24 0 240 111 0 0 chr15 53413190 53413226 -47967295 + (GGA)n Simple_repeat Simple_repeat 2 37 0 1803 187 39 39 chr15 53413776 53414237 -47966284 - MER65C LTR ERV1 0 461 1 1261 173 47 4 chr15 53414895 53415150 -47965371 - LTR54 LTR ERV1 -7 503 238 1033 167 0 0 chr15 53415179 53415341 -47965180 + FRAM SINE Alu 1 161 -15 955 132 102 49 chr15 53415345 53415550 -47964971 - LTR54 LTR ERV1 -277 233 18 2337 98 12 0 chr15 53415550 53415885 -47964636 + L1PB1 LINE L1 5811 6149 -2 340 290 40 106 chr15 53416633 53416954 -47963567 + MLT1K LTR MaLR 236 535 -53 253 239 145 83 chr15 53416963 53417493 -47963028 + MER34 LTR ERV1 61 542 0 458 282 103 34 chr15 53417545 53417954 -47962567 + MLT1J2 LTR MaLR 1 448 -2 1414 164 69 21 chr15 53418247 53418582 -47961939 - LTR48 LTR ERV1 0 787 437 844 165 30 4 chr15 53418592 53418781 -47961740 - LTR54 LTR ERV1 -92 418 238 828 182 0 0 chr15 53418798 53418930 -47961591 + FRAM SINE Alu 1 131 -45 1563 152 103 61 chr15 53418932 53419340 -47961181 - LTR48 LTR ERV1 -362 425 1 428 359 47 13 chr15 53419723 53419957 -47960564 + LTR16C LTR ERVL 74 315 -176 872 190 151 13 chr15 53420012 53420244 -47960277 + LTR50 LTR ERVL 12 275 -520 4336 168 37 8 chr15 53420270 53420519 -47960002 - L1 LINE L1 -1224 4922 4682 1769 163 9 35 chr15 53420519 53420838 -47959683 - AluJo SINE Alu 0 312 2 4336 168 37 8 chr15 53420838 53421513 -47959008 - L1 LINE L1 -1464 4682 3971 324 204 91 0 chr15 53421527 53421615 -47958906 + MER5C DNA MER1_type 225 320 -4 2317 103 0 0 chr15 53421619 53421920 -47958601 - AluSq SINE Alu -10 303 3 356 345 54 32 chr15 53421944 53422222 -47958299 + MLT1J2 LTR MaLR 153 436 -14 408 358 96 19 chr15 53422269 53422646 -47957875 + L2 LINE L2 2215 2620 -694 27 0 0 0 chr15 53422873 53422900 -47957621 + AT_rich Low_complexity Low_complexity 1 27 0 2178 115 3 3 chr15 53423352 53423648 -47956873 + AluSq SINE Alu 1 296 -17 1225 297 35 60 chr15 53423933 53424502 -47956019 + LTR67 LTR ERVL 3 557 0 353 357 70 6 chr15 53425021 53425178 -47955343 + L2 LINE L2 3105 3271 -1 22 0 0 0 chr15 53425939 53425961 -47954560 + AT_rich Low_complexity Low_complexity 1 22 0 327 266 106 39 chr15 53426980 53427213 -47953308 - L1MEd LINE L1 -4906 1213 960 743 191 0 8 chr15 53427213 53427339 -47953182 - FLAM_A SINE Alu -8 125 1 327 266 106 39 chr15 53427339 53427361 -47953160 - L1MEd LINE L1 -5159 960 941 204 216 0 0 chr15 53427520 53427557 -47952964 + (TG)n Simple_repeat Simple_repeat 2 38 0 1184 169 94 91 chr15 53427835 53427877 -47952644 - MSTC LTR MaLR -24 404 364 2378 99 0 0 chr15 53427877 53428180 -47952341 - AluSg SINE Alu -7 303 1 1184 169 94 91 chr15 53428180 53428510 -47952011 - MSTC LTR MaLR -64 364 31 258 272 82 54 chr15 53428662 53428846 -47951675 - L1MEd LINE L1 -5887 232 44 202 185 15 62 chr15 53428920 53428985 -47951536 + A-rich Low_complexity Low_complexity 3 64 0 21 57 0 0 chr15 53429020 53429055 -47951466 + AT_rich Low_complexity Low_complexity 1 35 0 2053 148 0 3 chr15 53429197 53429495 -47951026 + AluJb SINE Alu 1 297 -15 317 220 38 91 chr15 53429496 53429628 -47950893 + L1MC4 LINE L1 7914 8038 -4 309 147 44 0 chr15 53429663 53429731 -47950790 + L1M4 LINE L1 3875 3945 -2201 238 206 44 15 chr15 53429938 53430006 -47950515 - MER96 DNA MER1_type? 0 175 106 264 133 0 22 chr15 53430022 53430067 -47950454 - L1ME LINE L1 -543 5623 5580 5233 249 51 47 chr15 53430069 53431497 -47949024 - L1ME LINE L1 -659 5507 4072 2316 93 0 10 chr15 53431497 53431808 -47948713 - AluSg SINE Alu 0 310 3 5233 249 51 47 chr15 53431808 53432463 -47948058 - L1ME LINE L1 -2094 4072 3421 1111 139 41 0 chr15 53432456 53432650 -47947871 - L1MC2 LINE L1 -511 5833 5632 * 370 345 9 0 chr15 53432652 53432762 -47947759 - MIR SINE MIR -150 112 2 562 101 18 55 chr15 53432927 53433036 -47947485 + L1MB4 LINE L1 6065 6169 -11 594 198 16 2 chr15 53433422 53433572 -47946949 - L1ME LINE L1 -2693 3453 3303 558 264 140 11 chr15 53433681 53433907 -47946614 + MIR SINE MIR 7 258 -4 211 191 0 0 chr15 53434861 53434903 -47945618 + CT-rich Low_complexity Low_complexity 2 43 0 2742 172 20 57 chr15 53435248 53436406 -47944115 + L1MB8 LINE L1 4773 5830 -354 1193 158 49 1 chr15 53436408 53436695 -47943826 + MER2 DNA MER2_type 4 340 -5 1544 156 6 52 chr15 53436700 53437047 -47943474 + L1MB8 LINE L1 5828 6158 -20 1984 147 10 0 chr15 53437102 53437409 -47943112 + AluSx SINE Alu 1 310 -2 276 30 0 0 chr15 53437409 53437442 -47943079 + (GGAA)n Simple_repeat Simple_repeat 2 34 0 335 276 112 0 chr15 53437654 53437770 -47942751 - L2 LINE L2 -4 3309 3181 321 285 101 51 chr15 53437770 53437928 -47942593 - L2 LINE L2 -247 3066 2901 875 178 56 6 chr15 53437928 53438108 -47942413 - MER5A DNA MER1_type 0 189 1 768 232 7 0 chr15 53438162 53438317 -47942204 - MER63A DNA MER1_type 0 210 55 614 272 31 11 chr15 53438329 53438520 -47942001 - L2 LINE L2 -462 2852 2658 372 234 23 70 chr15 53438556 53438684 -47941837 + MLT1J LTR MaLR 78 199 -312 314 236 14 14 chr15 53438970 53439042 -47941479 - L2 LINE L2 -664 2650 2579 267 253 115 52 chr15 53439057 53439231 -47941290 + LTR33A LTR ERVL 2 186 -337 528 160 0 0 chr15 53439233 53439333 -47941188 + CT-rich Low_complexity Low_complexity 3 102 0 207 0 0 0 chr15 53439329 53439352 -47941169 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 427 245 112 0 chr15 53439413 53439556 -47940965 + LTR33A LTR ERVL 365 523 0 236 245 41 0 chr15 53439558 53439656 -47940865 - L2 LINE L2 -738 2576 2475 223 327 137 7 chr15 53439690 53439843 -47940678 + L2 LINE L2 2366 2538 -776 379 279 122 17 chr15 53440264 53440436 -47940085 + MIR SINE MIR 63 252 -10 1902 111 32 87 chr15 53441249 53441627 -47938894 + MLT2D LTR ERVL 1 357 -57 387 0 0 0 chr15 53441627 53441670 -47938851 + (TC)n Simple_repeat Simple_repeat 2 44 0 309 230 0 0 chr15 53442008 53442082 -47938439 + (TA)n Simple_repeat Simple_repeat 1 74 0 32 0 0 0 chr15 53442633 53442665 -47937856 + AT_rich Low_complexity Low_complexity 1 32 0 2218 115 0 3 chr15 53442885 53443189 -47937332 + AluSp SINE Alu 1 303 -10 738 208 42 17 chr15 53443455 53443790 -47936731 - MLT1D LTR MaLR -7 498 84 368 153 59 110 chr15 53443791 53443909 -47936612 + L2 LINE L2 2573 2684 -630 * 991 261 63 35 chr15 53443908 53444226 -47936295 - L2 LINE L2 -946 2368 2042 898 237 9 0 chr15 53444227 53444438 -47936083 + LTR16B LTR ERVL 252 464 0 1644 173 14 14 chr15 53444466 53444761 -47935760 + AluJo SINE Alu 1 295 -17 655 262 47 37 chr15 53444809 53445023 -47935498 - L2 LINE L2 -1545 1769 1554 383 329 28 19 chr15 53445126 53445286 -47935235 - MIR SINE MIR -59 203 42 2198 135 0 6 chr15 53447219 53447531 -47932990 - AluSx SINE Alu -2 310 1 231 234 106 32 chr15 53447560 53447654 -47932867 + L2 LINE L2 3204 3304 -9 480 136 0 12 chr15 53448305 53448386 -47932135 + MER39 LTR ERV1 6 85 -622 1294 153 9 0 chr15 53448386 53448609 -47931912 - MER41C LTR ERV1 0 554 330 2145 160 127 55 chr15 53448643 53448788 -47931733 + MER39 LTR ERV1 94 227 -480 1570 191 14 3 chr15 53448788 53449076 -47931445 + AluJo SINE Alu 11 301 -11 2145 160 127 55 chr15 53449076 53449304 -47931217 + MER39 LTR ERV1 227 437 -270 1889 128 59 0 chr15 53449304 53449593 -47930928 + AluSx SINE Alu 1 306 -6 2145 160 127 55 chr15 53449593 53449787 -47930734 + MER39 LTR ERV1 437 703 -4 2589 150 71 4 chr15 53450327 53450820 -47929701 - LTR48B LTR ERV1 0 644 119 4703 115 20 43 chr15 53451409 53452829 -47927692 + pTR5 LTR ERV1 743 2438 0 2103 116 14 7 chr15 53453248 53453541 -47926980 + AluSx SINE Alu 1 295 -17 2182 167 0 31 chr15 53453630 53453999 -47926522 + MER41B LTR ERV1 150 505 -130 1936 145 0 0 chr15 53453999 53454309 -47926212 - AluSx SINE Alu 0 310 1 2182 167 0 31 chr15 53454309 53454382 -47926139 + MER41B LTR ERV1 505 579 -56 466 226 169 16 chr15 53454558 53454748 -47925773 + MIR SINE MIR 32 256 -6 263 347 104 52 chr15 53454974 53455242 -47925279 - L2 LINE L2 -3 3269 2988 4178 129 3 2 chr15 53455300 53455934 -47924587 + MER41B LTR ERV1 1 635 0 254 240 70 30 chr15 53455963 53456063 -47924458 - MLT1J LTR MaLR -22 489 386 3735 109 72 5 chr15 53456187 53456781 -47923740 + MER41B LTR ERV1 1 634 -1 260 261 29 0 chr15 53456806 53456875 -47923646 - MLT1L LTR MaLR -335 280 210 198 0 0 0 chr15 53457180 53457202 -47923319 + (A)n Simple_repeat Simple_repeat 1 22 0 603 150 20 0 chr15 53457205 53457305 -47923216 - FLAM_A SINE Alu -20 122 21 2017 138 0 22 chr15 53457776 53458095 -47922426 - AluJb SINE Alu 0 312 1 285 65 87 11 chr15 53458137 53458229 -47922292 + (TA)n Simple_repeat Simple_repeat 2 100 0 300 134 42 21 chr15 53458332 53458474 -47922047 + (TA)n Simple_repeat Simple_repeat 2 146 0 1747 254 118 51 chr15 53458495 53459435 -47921086 - HAL1 LINE L1 -398 2109 1060 2146 110 34 0 chr15 53459435 53459726 -47920795 - AluSg SINE Alu -7 303 3 1747 254 118 51 chr15 53459726 53460058 -47920463 - HAL1 LINE L1 -1447 1060 752 1484 199 17 10 chr15 53460324 53460621 -47919900 + MER47B DNA MER2_type 2 300 -118 7120 60 3 0 chr15 53460621 53462057 -47918464 + L1PA8 LINE L1 4713 6159 -13 628 139 15 80 chr15 53462382 53462434 -47918087 + MER47B DNA MER2_type 291 345 -1978 1637 214 3 3 chr15 53462434 53462737 -47917784 - AluJo SINE Alu -9 303 1 628 139 15 80 chr15 53462737 53462821 -47917700 + MER47B DNA MER2_type 345 418 0 432 247 26 2 chr15 53462925 53463050 -47917471 - L1MC/D LINE L1 -469 5652 5540 21 36 0 0 chr15 53463185 53463213 -47917308 + AT_rich Low_complexity Low_complexity 1 28 0 5956 116 0 0 chr15 53463318 53464566 -47915955 - L1PA16 LINE L1 0 6166 4925 5707 175 8 8 chr15 53464566 53465720 -47914801 + L1PA16 LINE L1 3796 4949 -1197 302 156 42 73 chr15 53465866 53465962 -47914559 - L1MC/D LINE L1 -322 5799 5724 371 326 79 45 chr15 53466062 53466353 -47914168 - L3 LINE CR1 -353 1224 924 362 324 45 34 chr15 53466373 53466552 -47913969 + L3 LINE CR1 708 888 -689 198 167 83 0 chr15 53466613 53466661 -47913860 - L3 LINE CR1 -581 996 945 354 328 76 0 chr15 53467181 53467300 -47913221 + L3 LINE CR1 980 1107 -470 1538 148 16 4 chr15 53467300 53467550 -47912971 - MLT1B LTR MaLR 0 390 138 2250 113 10 0 chr15 53467752 53468076 -47912445 + AluSq SINE Alu 1 327 0 870 143 0 26 chr15 53468124 53468167 -47912354 - MLT1B LTR MaLR -240 150 107 2339 88 0 16 chr15 53468167 53468474 -47912047 - AluSx SINE Alu -8 304 3 870 143 0 26 chr15 53468474 53468584 -47911937 - MLT1B LTR MaLR -283 107 1 405 227 0 0 chr15 53468873 53468948 -47911573 + MIR3 SINE MIR 127 201 -7 30 27 0 0 chr15 53468959 53468996 -47911525 + AT_rich Low_complexity Low_complexity 1 37 0 345 169 0 0 chr15 53470098 53470157 -47910364 - MLT1G1 LTR MaLR 0 595 537 889 199 17 6 chr15 53470158 53470334 -47910187 - MER58A DNA MER1_type -4 220 43 1554 166 91 11 chr15 53470337 53470602 -47909919 + AluJo SINE Alu 1 286 -26 313 254 207 37 chr15 53470717 53471080 -47909441 - MLT1H LTR MaLR -92 503 72 1640 146 91 11 chr15 53471525 53471799 -47908722 + AluJb SINE Alu 6 301 -11 1896 214 126 10 chr15 53471823 53472401 -47908120 - L1MC4 LINE L1 -674 7368 6724 2097 131 0 0 chr15 53472411 53472701 -47907820 - AluSx SINE Alu -22 290 1 1180 246 62 0 chr15 53473025 53473330 -47907191 + LTR16C LTR ERVL 168 491 0 248 269 134 25 chr15 53473673 53473792 -47906729 + L2 LINE L2 3182 3313 0 23 0 0 0 chr15 53473929 53473952 -47906569 + AT_rich Low_complexity Low_complexity 1 23 0 292 211 40 0 chr15 53474426 53474502 -47906019 + MLT1K LTR MaLR 492 570 -18 1547 178 25 4 chr15 53474635 53474910 -47905611 + AluJo SINE Alu 22 302 -10 270 56 0 0 chr15 53474910 53474946 -47905575 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 465 353 69 30 chr15 53475345 53475679 -47904842 + L2 LINE L2 2319 2665 -649 269 309 117 11 chr15 53475833 53475927 -47904594 + MLT1K LTR MaLR 42 145 -443 286 289 19 10 chr15 53475971 53476075 -47904446 + MLT1K LTR MaLR 142 246 -342 428 147 15 0 chr15 53477548 53477616 -47902905 - Tigger7 DNA MER2_type -8 2579 2511 2869 184 19 2 chr15 53477626 53478142 -47902379 - Tigger7 DNA MER2_type -1961 526 2 1886 147 3 0 chr15 53478503 53478789 -47901732 + AluJo SINE Alu 1 287 -25 2452 132 38 73 chr15 53478803 53479326 -47901195 + L1MB3 LINE L1 5679 6183 0 261 132 0 0 chr15 53479326 53479379 -47901142 + L1MB3 LINE L1 6131 6183 0 375 259 12 12 chr15 53479473 53479558 -47900963 - L2 LINE L2 -37 3276 3192 930 282 80 17 chr15 53479667 53480018 -47900503 - MLT1J LTR MaLR -138 373 1 273 279 53 128 chr15 53480181 53480557 -47899964 - MLT1G1-int LTR MaLR -184 1187 840 502 332 20 0 chr15 53480933 53481183 -47899338 - MLT1G1-int LTR MaLR -832 539 285 249 254 93 8 chr15 53481185 53481303 -47899218 - MLT1G1-int LTR MaLR -1235 136 9 1231 261 156 16 chr15 53481309 53481822 -47898699 - MLT1G1 LTR MaLR 0 595 11 274 246 14 0 chr15 53481834 53481903 -47898618 + LTR16A1 LTR ERVL 380 449 -8 2250 153 57 39 chr15 53481903 53482362 -47898159 - MLT1C LTR MaLR 0 467 1 2278 150 81 25 chr15 53482401 53482622 -47897899 + MER61D LTR ERV1 30 237 -264 2252 116 73 14 chr15 53482622 53482966 -47897555 + THE1B LTR MaLR 1 364 0 2278 150 81 25 chr15 53482966 53483191 -47897330 + MER61D LTR ERV1 237 501 0 2356 110 0 0 chr15 53483219 53483528 -47896993 + AluSx SINE Alu 3 311 -1 217 302 167 10 chr15 53483529 53483625 -47896896 + MIR SINE MIR 151 261 -1 215 255 0 0 chr15 53483627 53483674 -47896847 + L2 LINE L2 3193 3239 -33 229 283 0 0 chr15 53483679 53483739 -47896782 + MLT1K LTR MaLR 3 62 -526 756 317 44 30 chr15 53485516 53485882 -47894639 + MLT1K LTR MaLR 56 426 -162 919 259 73 75 chr15 53485948 53486469 -47894052 + LTR67 LTR ERVL 29 548 -9 331 308 45 30 chr15 53486526 53486658 -47893863 - MIR SINE MIR -88 174 42 284 171 0 53 chr15 53487404 53487480 -47893041 - LTR33 LTR ERVL 0 521 450 1891 119 3 59 chr15 53487489 53487814 -47892707 + AluSx SINE Alu 1 308 0 649 123 160 0 chr15 53487852 53487958 -47892563 - FLAM_C SINE Alu -10 123 1 367 243 97 28 chr15 53488015 53488159 -47892362 - LTR33 LTR ERVL -164 357 204 326 191 155 0 chr15 53488235 53488319 -47892202 - LTR33 LTR ERVL -424 97 1 2391 85 13 0 chr15 53488418 53488724 -47891797 - AluSx SINE Alu -2 310 1 410 371 27 11 chr15 53488801 53488987 -47891534 - MIR3 SINE MIR -4 204 16 823 159 31 45 chr15 53490051 53490247 -47890274 - MER31B LTR ERV1 -302 164 1 282 160 0 0 chr15 53490311 53490361 -47890160 + GA-rich Low_complexity Low_complexity 3 52 0 360 195 187 8 chr15 53490435 53490558 -47889963 - MARNA DNA Mariner -249 337 193 282 267 167 11 chr15 53490558 53490648 -47889873 - MER81 DNA DNA 0 114 11 226 208 0 19 chr15 53490724 53490777 -47889744 + MARNA DNA Mariner 397 448 -138 22 0 0 0 chr15 53491013 53491035 -47889486 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr15 53491142 53491175 -47889346 + (TG)n Simple_repeat Simple_repeat 1 33 0 2482 269 96 27 chr15 53492091 53493132 -47887389 + L2 LINE L2 1383 2495 -819 740 216 41 5 chr15 53495333 53495527 -47884994 - MER3 DNA MER1_type -4 205 5 1895 149 21 0 chr15 53495576 53495864 -47884657 - AluSx SINE Alu -18 294 1 591 259 86 0 chr15 53496011 53496173 -47884348 - MER45A DNA AcHobo -1 177 2 2182 121 7 0 chr15 53496674 53496972 -47883549 + AluSq SINE Alu 11 310 -3 1939 137 38 10 chr15 53497625 53497918 -47882603 + AluSx SINE Alu 1 301 -11 763 155 23 0 chr15 53497977 53498106 -47882415 + AluSg/x SINE Alu 180 311 -1 342 262 157 56 chr15 53498116 53498402 -47882119 + L1ME LINE L1 2128 2442 -3704 411 268 114 87 chr15 53498630 53499703 -47880818 + L1ME LINE L1 2675 3776 -2370 689 298 43 10 chr15 53500192 53500491 -47880030 - MLT1J LTR MaLR -200 311 3 339 344 51 27 chr15 53500501 53500757 -47879764 + L1ME LINE L1 4009 4270 -1876 324 0 0 0 chr15 53500815 53500851 -47879670 + (TG)n Simple_repeat Simple_repeat 1 36 0 2228 120 0 7 chr15 53501239 53501540 -47878981 + AluSx SINE Alu 1 299 -13 234 257 48 9 chr15 53501649 53501754 -47878767 + L1ME LINE L1 4908 5016 -1130 866 275 43 36 chr15 53501975 53502463 -47878058 + L1ME LINE L1 5257 5751 -411 1788 174 3 16 chr15 53502481 53502791 -47877730 + AluJb SINE Alu 5 310 -2 24 53 0 0 chr15 53503316 53503354 -47877167 + AT_rich Low_complexity Low_complexity 1 38 0 2267 113 0 10 chr15 53505081 53505390 -47875131 + AluSg SINE Alu 1 306 -4 345 325 31 55 chr15 53505440 53505603 -47874918 - MIR3 SINE MIR -16 192 34 217 343 14 21 chr15 53505829 53505972 -47874549 + L2 LINE L2 2814 2955 -317 475 355 46 55 chr15 53506052 53506399 -47874122 - L2 LINE L2 -1 3271 2928 215 216 0 0 chr15 53507385 53507422 -47873099 + (TG)n Simple_repeat Simple_repeat 2 38 0 544 276 36 55 chr15 53507960 53508235 -47872286 + MLT1K LTR MaLR 234 503 -85 423 56 0 0 chr15 53508541 53508595 -47871926 + (TA)n Simple_repeat Simple_repeat 2 55 0 298 319 83 35 chr15 53508742 53508886 -47871635 - L2 LINE L2 0 3272 3122 21 0 0 0 chr15 53509240 53509261 -47871260 + AT_rich Low_complexity Low_complexity 1 21 0 373 318 108 0 chr15 53509847 53509976 -47870545 - MIR3 SINE MIR -22 186 44 1745 164 63 0 chr15 53510236 53510522 -47869999 - AluJo SINE Alu -8 304 1 27 0 0 0 chr15 53511105 53511132 -47869389 + AT_rich Low_complexity Low_complexity 1 27 0 1962 150 3 0 chr15 53511209 53511503 -47869018 - AluSx SINE Alu -17 295 1 704 288 88 25 chr15 53512038 53512358 -47868163 + L2 LINE L2 2194 2533 -781 391 281 30 43 chr15 53512384 53512548 -47867973 + L1ME LINE L1 5615 5776 -345 21 57 0 0 chr15 53512609 53512644 -47867877 + AT_rich Low_complexity Low_complexity 1 35 0 963 204 26 48 chr15 53512646 53512960 -47867561 - L1MA9 LINE L1 -42 6270 5971 1047 312 64 35 chr15 53512977 53514026 -47866495 + L1MEd LINE L1 357 1531 -1045 334 286 0 0 chr15 53514087 53514199 -47866322 + L1MEd LINE L1 1583 1694 -4702 24 0 0 0 chr15 53514339 53514363 -47866158 + AT_rich Low_complexity Low_complexity 1 24 0 612 327 46 13 chr15 53514644 53514950 -47865571 - LTR33 LTR ERVL 0 521 206 309 230 46 11 chr15 53514985 53515072 -47865449 - LTR33 LTR ERVL -389 132 43 627 270 38 96 chr15 53515112 53515226 -47865295 + L1MEd LINE L1 2197 2316 -4080 2039 106 3 27 chr15 53515226 53515562 -47864959 - AluSx SINE Alu 0 329 1 627 270 38 96 chr15 53515562 53515791 -47864730 + L1MEd LINE L1 2316 2521 -3875 541 217 54 8 chr15 53515797 53515926 -47864595 + MER63 DNA MER1_type 4 764 -72 296 251 94 21 chr15 53516108 53516299 -47864222 + L1MC4 LINE L1 7703 7907 -135 235 217 0 0 chr15 53516333 53516379 -47864142 + CT-rich Low_complexity Low_complexity 3 48 0 1121 272 80 61 chr15 53516380 53517104 -47863417 + L1ME3 LINE L1 47 784 -5758 299 314 12 0 chr15 53517124 53517210 -47863311 + CT-rich Low_complexity Low_complexity 2 88 0 1471 220 91 37 chr15 53517212 53517774 -47862747 + L1ME3 LINE L1 1866 2463 -4183 1696 59 0 51 chr15 53517774 53518010 -47862511 - AluY SINE Alu -3 308 85 1471 220 91 37 chr15 53518010 53518042 -47862479 + L1ME3 LINE L1 2463 2492 -4154 587 121 0 0 chr15 53518044 53518127 -47862394 + FRAM SINE Alu 72 154 -22 398 161 9 27 chr15 53518131 53518243 -47862278 + L1ME3 LINE L1 2485 2594 -4052 4264 133 3 9 chr15 53518760 53519446 -47861075 - L1PB4 LINE L1 0 6156 5475 689 152 18 88 chr15 53519496 53519614 -47860907 + L1ME3 LINE L1 2582 2707 -4000 214 65 0 0 chr15 53519614 53519645 -47860876 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2326 89 0 0 chr15 53519645 53519927 -47860594 - AluSc SINE Alu -27 282 1 689 152 18 88 chr15 53519927 53520023 -47860498 + L1ME3 LINE L1 2705 2823 -3884 1490 187 57 76 chr15 53520028 53520197 -47860324 + MLT1C LTR MaLR 6 177 -290 1220 163 0 184 chr15 53520197 53520566 -47859955 + AluJo SINE Alu 1 301 -1 1490 187 57 76 chr15 53520566 53520867 -47859654 + MLT1C LTR MaLR 177 467 0 1961 216 31 63 chr15 53520867 53521197 -47859324 + L1MB5 LINE L1 2779 3118 -3526 1510 88 17 58 chr15 53521197 53521437 -47859084 - MER30 DNA MER1_type 0 230 1 1961 216 31 63 chr15 53521437 53521852 -47858669 + L1MB5 LINE L1 3118 3500 -3144 1555 168 90 0 chr15 53521881 53522149 -47858372 + AluJb SINE Alu 5 296 -16 180 0 0 0 chr15 53522178 53522198 -47858323 + (TAA)n Simple_repeat Simple_repeat 2 21 0 6209 196 49 20 chr15 53522200 53523361 -47857160 + L1MB5 LINE L1 4000 5126 -1546 2140 113 10 0 chr15 53523361 53523662 -47856859 + AluSq SINE Alu 1 304 -9 6209 196 49 20 chr15 53523662 53524204 -47856317 + L1MB5 LINE L1 5126 5651 -1021 2086 93 33 37 chr15 53524204 53524504 -47856017 + AluSg SINE Alu 1 299 -11 6209 196 49 20 chr15 53524504 53525397 -47855124 + L1MB5 LINE L1 5651 6672 0 385 333 60 15 chr15 53525596 53525863 -47854658 + L1ME3 LINE L1 2980 3258 -3386 552 178 0 10 chr15 53526105 53526206 -47854315 - FLAM_C SINE Alu -11 132 33 483 279 68 76 chr15 53526313 53526674 -47853847 + L1ME3 LINE L1 3613 3975 -2669 1929 127 34 0 chr15 53526674 53526965 -47853556 + AluSx SINE Alu 1 301 -11 483 279 68 76 chr15 53526965 53527009 -47853512 + L1ME3 LINE L1 3975 4018 -2626 468 48 0 0 chr15 53527009 53527072 -47853449 + (CA)n Simple_repeat Simple_repeat 1 63 0 483 279 68 76 chr15 53527072 53527322 -47853199 + L1ME3 LINE L1 4018 4264 -2380 464 268 22 7 chr15 53527397 53527535 -47852986 + MER63A DNA MER1_type 48 187 -23 595 288 68 3 chr15 53527541 53527852 -47852669 + L1ME3 LINE L1 5358 5698 -946 289 342 83 51 chr15 53528020 53528371 -47852150 + L2 LINE L2 1752 2113 -1201 212 146 49 0 chr15 53528403 53528444 -47852077 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 341 250 26 79 chr15 53528445 53528597 -47851924 - HAL1b LINE L1 -12 1336 1193 476 283 82 45 chr15 53528702 53528943 -47851578 - MIR SINE MIR 0 262 17 439 292 137 35 chr15 53529092 53529458 -47851063 - MLT1L LTR MaLR -210 405 3 668 267 66 18 chr15 53529481 53529754 -47850767 - L1ME LINE L1 -336 5785 5500 250 367 20 0 chr15 53529982 53530080 -47850441 + L2 LINE L2 3160 3259 -13 381 299 101 66 chr15 53530080 53530445 -47850076 - L1ME4a LINE L1 -197 5924 5547 2519 76 0 16 chr15 53530446 53530760 -47849761 - AluSq SINE Alu -4 309 1 225 277 92 29 chr15 53530784 53531022 -47849499 - L1ME4a LINE L1 -723 5519 5267 264 317 30 30 chr15 53531222 53531323 -47849198 + L2 LINE L2 2622 2722 -592 624 273 32 32 chr15 53531584 53531837 -47848684 + L1ME3 LINE L1 6164 6416 -244 1365 187 43 126 chr15 53531858 53532155 -47848366 + L1PB2 LINE L1 5138 5458 -693 2084 124 6 40 chr15 53532155 53532477 -47848044 + AluSq SINE Alu 1 311 -2 1365 187 43 126 chr15 53532477 53532562 -47847959 + L1PB2 LINE L1 5458 5548 -603 2250 109 0 3 chr15 53532562 53532873 -47847648 + AluSg SINE Alu 1 310 0 1365 187 43 126 chr15 53532873 53533689 -47846832 + L1PB2 LINE L1 5548 5937 -214 3529 120 53 61 chr15 53532873 53533200 -47847321 + L1MA8 LINE L1 5432 5760 -531 2296 101 0 10 chr15 53533200 53533506 -47847015 + AluSx SINE Alu 1 303 -9 3529 120 53 61 chr15 53533506 53533913 -47846608 + L1MA8 LINE L1 5760 6160 -131 * 5792 90 24 39 chr15 53533907 53534869 -47845652 + L1MA2 LINE L1 5353 6300 -4 737 114 15 0 chr15 53534889 53535020 -47845501 + L1MA8 LINE L1 6158 6290 -1 1609 246 27 14 chr15 53535034 53535659 -47844862 + L1M4 LINE L1 2148 2780 -3366 * 5272 204 36 69 chr15 53535658 53535784 -47844737 + L1M4 LINE L1 3087 3216 -2930 1989 149 0 0 chr15 53535784 53536073 -47844448 + AluJo SINE Alu 12 300 -12 5272 204 36 69 chr15 53536073 53536358 -47844163 + L1M4 LINE L1 3216 3509 -2637 1656 128 0 16 chr15 53536358 53536601 -47843920 + AluSq SINE Alu 1 239 -74 5272 204 36 69 chr15 53536601 53538095 -47842426 + L1M4 LINE L1 3509 4930 -1216 1922 119 3 33 chr15 53538265 53538568 -47841953 + AluSx SINE Alu 1 294 -18 264 248 30 0 chr15 53538615 53538716 -47841805 + L1M LINE L1 5325 5428 -931 246 268 244 0 chr15 53539056 53539138 -47841383 - MIR SINE MIR -43 219 118 435 149 0 0 chr15 53539148 53539215 -47841306 - Charlie3 DNA MER1_type 0 2711 2645 277 240 45 0 chr15 53539515 53539582 -47840939 + MIR SINE MIR 34 100 -108 214 261 204 23 chr15 53540050 53540138 -47840383 + L2 LINE L2 3169 3272 0 2005 147 17 20 chr15 53541220 53541568 -47838953 - MER7A DNA MER2_type 0 346 2 406 245 49 0 chr15 53541631 53541733 -47838788 - MER91C DNA MER1_type 0 140 34 722 205 9 112 chr15 53541939 53542022 -47838499 - MIR SINE MIR 0 262 172 2334 75 0 32 chr15 53542022 53542330 -47838191 - AluY SINE Alu -13 298 1 722 205 9 112 chr15 53542330 53542461 -47838060 - MIR SINE MIR -90 172 70 1825 159 3 34 chr15 53542648 53542969 -47837552 + AluJb SINE Alu 1 311 -1 206 304 51 25 chr15 53544782 53544861 -47835660 - L2 LINE L2 -8 3305 3225 268 323 43 0 chr15 53544904 53544997 -47835524 - L2 LINE L2 -816 2498 2402 537 266 78 115 chr15 53545004 53545527 -47834994 + MLT1J LTR MaLR 7 510 -1 831 138 24 95 chr15 53545815 53545884 -47834637 - Tigger6 DNA MER2_type -16 1581 1509 2236 91 3 3 chr15 53545884 53546169 -47834352 + AluSc SINE Alu 1 285 -24 831 138 24 95 chr15 53546169 53546308 -47834213 - Tigger6 DNA MER2_type -88 1509 1388 879 137 7 14 chr15 53546308 53546454 -47834067 - Tigger7 DNA MER2_type -1 2490 2346 852 148 0 0 chr15 53546454 53546576 -47833945 + FLAM_C SINE Alu 2 123 -10 257 227 21 165 chr15 53546671 53546865 -47833656 - L2 LINE L2 -36 3277 3112 475 227 32 19 chr15 53546954 53547108 -47833413 + L1MC4 LINE L1 7421 7576 -466 1600 134 0 4 chr15 53547474 53547712 -47832809 + AluSx SINE Alu 59 295 -17 1547 160 69 45 chr15 53547715 53548003 -47832518 + AluJo SINE Alu 1 295 -17 1356 156 46 66 chr15 53548003 53548061 -47832460 - Charlie1a DNA MER1_type -1423 1338 1280 1952 132 3 26 chr15 53548061 53548409 -47832112 + L1MB3 LINE L1 5842 6181 -2 1356 156 46 66 chr15 53548409 53548547 -47831974 - Charlie1a DNA MER1_type -1481 1280 1141 2194 74 78 0 chr15 53548547 53548830 -47831691 + AluSx SINE Alu 1 305 -7 1356 156 46 66 chr15 53548830 53549024 -47831497 - Charlie1a DNA MER1_type -1620 1141 955 2160 125 0 0 chr15 53549039 53549334 -47831187 + AluY SINE Alu 1 295 -16 1822 212 50 13 chr15 53549335 53549798 -47830723 - Charlie1a DNA MER1_type -648 807 328 1543 261 80 33 chr15 53549800 53550043 -47830478 + L1M4 LINE L1 3957 4187 -1959 2294 114 0 0 chr15 53550043 53550349 -47830172 + AluSg SINE Alu 1 306 -4 1543 261 80 33 chr15 53550349 53550809 -47829712 + L1M4 LINE L1 4187 4693 -1453 1532 203 4 4 chr15 53550870 53551175 -47829346 - AluJo SINE Alu 0 306 2 1139 232 43 65 chr15 53551177 53551522 -47828999 + L1ME3 LINE L1 3325 3676 -2470 1864 223 3 8 chr15 53551522 53551912 -47828609 + MLT1B LTR MaLR 3 390 0 1139 232 43 65 chr15 53551912 53553198 -47827323 + L1ME3 LINE L1 3676 5117 -1029 475 194 25 134 chr15 53553213 53553307 -47827214 - Charlie1a DNA MER1_type -2576 185 122 2054 123 0 0 chr15 53553307 53553623 -47826898 + AluSx SINE Alu 1 316 0 475 194 25 134 chr15 53553623 53553728 -47826793 - Charlie1a DNA MER1_type -2639 122 7 695 213 121 56 chr15 53553739 53553988 -47826533 + L1ME3 LINE L1 5807 6071 -91 21 36 0 0 chr15 53554022 53554050 -47826471 + AT_rich Low_complexity Low_complexity 1 28 0 233 274 24 0 chr15 53554050 53554134 -47826387 - Charlie2 DNA MER1_type -335 2527 2442 249 284 54 0 chr15 53554372 53554446 -47826075 - L2 LINE L2 0 3272 3195 277 303 184 0 chr15 53555542 53555651 -47824870 + L2 LINE L2 3143 3271 -1 1405 193 12 72 chr15 53556176 53556298 -47824223 + AluJo SINE Alu 1 129 -183 2369 79 0 0 chr15 53556298 53556588 -47823933 - AluSg SINE Alu -20 290 1 1405 193 12 72 chr15 53556588 53556786 -47823735 + AluJo SINE Alu 129 302 -10 248 130 22 0 chr15 53556809 53556855 -47823666 + G-rich Low_complexity Low_complexity 4 50 0 272 274 85 9 chr15 53557068 53557174 -47823347 + MLT1L LTR MaLR 171 284 -331 321 155 0 0 chr15 53557182 53557240 -47823281 + GA-rich Low_complexity Low_complexity 1 58 0 539 298 37 28 chr15 53557307 53557525 -47822996 + MLT1L LTR MaLR 372 591 -24 27 0 0 0 chr15 53559249 53559276 -47821245 + GC_rich Low_complexity Low_complexity 1 27 0 302 284 103 73 chr15 53559335 53559539 -47820982 - L1M2 LINE L1 -5881 968 759 1065 304 38 56 chr15 53560132 53560635 -47819886 - L2 LINE L2 0 3313 2820 201 358 72 41 chr15 53560892 53561280 -47819241 + L2 LINE L2 2271 2670 -644 1914 126 3 48 chr15 53561394 53561704 -47818817 - AluJb SINE Alu -16 296 1 394 279 38 13 chr15 53561876 53562034 -47818487 - MLT1K LTR MaLR -6 582 421 647 130 30 10 chr15 53562034 53562134 -47818387 + AluSg/x SINE Alu 197 298 -14 369 269 31 31 chr15 53562207 53562337 -47818184 - MLT1K LTR MaLR -323 265 136 578 286 107 18 chr15 53563079 53563415 -47817106 + MLT1J2 LTR MaLR 65 395 -55 2259 120 3 0 chr15 53563477 53563786 -47816735 - AluSq SINE Alu -3 310 1 670 258 104 21 chr15 53564628 53564868 -47815653 - MLT1K LTR MaLR -109 479 220 1395 271 105 0 chr15 53565213 53565659 -47814862 - LTR33 LTR ERVL -28 493 1 235 104 0 62 chr15 53566517 53566565 -47813956 - L2 LINE L2 0 3272 3228 468 256 188 0 chr15 53566602 53566735 -47813786 - MER5A DNA MER1_type -1 188 31 2262 140 14 8 chr15 53566915 53567279 -47813242 - MER47A DNA MER2_type 0 366 1 922 242 43 3 chr15 53567291 53567571 -47812950 + L1MB7 LINE L1 5884 6173 -11 366 286 9 38 chr15 53567618 53567723 -47812798 - MIR SINE MIR -113 149 48 831 270 109 72 chr15 53567960 53568463 -47812058 - LTR67 LTR ERVL -11 546 25 383 281 47 53 chr15 53568522 53568586 -47811935 + MER5A DNA MER1_type 14 77 -112 2534 54 0 16 chr15 53568586 53568902 -47811619 + AluY SINE Alu 1 311 0 383 281 47 53 chr15 53568902 53568957 -47811564 + MER5A DNA MER1_type 77 134 -55 2559 111 3 14 chr15 53568957 53569325 -47811196 + THE1B LTR MaLR 1 364 0 383 281 47 53 chr15 53569325 53569375 -47811146 + MER5A DNA MER1_type 134 183 -6 838 98 55 31 chr15 53569455 53569618 -47810903 - MER53 DNA DNA 0 189 23 6369 93 7 10 chr15 53570083 53571130 -47809391 + L1PA10 LINE L1 5120 6163 -5 1746 163 27 7 chr15 53571282 53571577 -47808944 + AluJb SINE Alu 1 301 -11 2076 93 64 0 chr15 53572052 53572332 -47808189 - AluSx SINE Alu -14 298 1 1652 160 5 97 chr15 53572427 53572809 -47807712 - MER7A DNA MER2_type -1 345 1 982 193 0 0 chr15 53572921 53573092 -47807429 + AluJb SINE Alu 134 304 -8 1522 204 60 73 chr15 53573106 53573733 -47806788 + L1MC5 LINE L1 6805 7424 -533 1826 195 0 0 chr15 53573733 53574040 -47806481 + AluJo SINE Alu 1 307 -5 364 67 33 0 chr15 53574044 53574104 -47806417 + (GGAA)n Simple_repeat Simple_repeat 1 62 0 789 227 80 33 chr15 53574104 53574469 -47806052 + L1MC5 LINE L1 7412 7793 -168 284 155 24 48 chr15 53574476 53574560 -47805961 + L1MC5 LINE L1 7835 7916 -45 255 275 39 51 chr15 53574567 53574745 -47805776 + L1ME4a LINE L1 5887 6062 -59 990 111 0 22 chr15 53575059 53575194 -47805327 + AluSx SINE Alu 1 132 -181 6147 40 8 0 chr15 53575194 53575989 -47804532 - L1PA5 LINE L1 -1620 4526 3726 7375 44 0 0 chr15 53575989 53577624 -47802897 + L1PA5 LINE L1 4515 6153 -1 1139 193 0 0 chr15 53577654 53577846 -47802675 + AluSx SINE Alu 121 312 0 259 265 80 31 chr15 53578542 53578704 -47801817 - L1M2 LINE L1 -743 5557 5388 1572 114 14 0 chr15 53580587 53580798 -47799723 + AluJo SINE Alu 84 297 -15 791 181 0 114 chr15 53580967 53581028 -47799493 - MER5A DNA MER1_type -3 186 120 2211 86 3 20 chr15 53581028 53581332 -47799189 + AluSc SINE Alu 1 299 -10 791 181 0 114 chr15 53581332 53581480 -47799041 - MER5A DNA MER1_type -69 120 1 1241 112 0 0 chr15 53581661 53581830 -47798691 - AluSq SINE Alu 0 313 145 300 268 70 14 chr15 53581830 53581972 -47798549 + HAL1 LINE L1 805 954 -1553 749 184 0 15 chr15 53582146 53582282 -47798239 + AluSq/x SINE Alu 1 134 -179 578 276 83 33 chr15 53582317 53582715 -47797806 + HAL1 LINE L1 1142 1559 -948 996 173 18 0 chr15 53582715 53582883 -47797638 - FAM SINE Alu -1 174 4 2054 128 23 7 chr15 53583007 53583311 -47797210 + AluSx SINE Alu 1 309 -3 442 264 24 24 chr15 53583466 53583591 -47796930 + L2 LINE L2 3188 3312 -1 1695 183 7 7 chr15 53583799 53584084 -47796437 - AluJo SINE Alu -16 296 12 1310 156 10 0 chr15 53584139 53584338 -47796183 - AluJo SINE Alu -107 205 5 2045 134 7 3 chr15 53584646 53584953 -47795568 + AluSx SINE Alu 1 308 -4 2067 140 0 3 chr15 53584962 53585254 -47795267 + AluJb SINE Alu 1 291 -21 384 233 12 0 chr15 53585262 53585348 -47795173 - HAL1 LINE L1 -2419 88 2 243 237 17 17 chr15 53585356 53585415 -47795106 - L2 LINE L2 0 3313 3255 1925 150 7 3 chr15 53586012 53586306 -47794215 - AluJb SINE Alu -17 295 1 1670 193 3 14 chr15 53586737 53587032 -47793489 + AluJb SINE Alu 2 293 -19 208 364 82 0 chr15 53587032 53587142 -47793379 + L2 LINE L2 3187 3305 -8 249 357 92 10 chr15 53587485 53587583 -47792938 - L2 LINE L2 -30 3242 3137 628 176 32 0 chr15 53587830 53587955 -47792566 + MSTD LTR MaLR 1 129 -267 799 176 33 7 chr15 53587978 53588131 -47792390 + MSTD LTR MaLR 240 396 0 2196 100 3 3 chr15 53588338 53588638 -47791883 + AluSx SINE Alu 1 300 -12 251 179 160 38 chr15 53588799 53588905 -47791616 - MLT1L LTR MaLR -331 284 166 736 161 213 14 chr15 53589233 53589444 -47791077 - MER2 DNA MER2_type -92 253 1 28 48 0 0 chr15 53590875 53590917 -47789604 + GC_rich Low_complexity Low_complexity 1 42 0 331 322 81 81 chr15 53591013 53591361 -47789160 - L1M2 LINE L1 -5729 1120 773 30 45 0 0 chr15 53591490 53591534 -47788987 + GC_rich Low_complexity Low_complexity 1 44 0 210 37 0 0 chr15 53591973 53592000 -47788521 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 198 0 0 0 chr15 53592430 53592452 -47788069 + (TG)n Simple_repeat Simple_repeat 2 23 0 21 82 0 0 chr15 53593480 53593529 -47786992 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr15 53593565 53593589 -47786932 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr15 53593826 53593872 -47786649 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr15 53594843 53594875 -47785646 + AT_rich Low_complexity Low_complexity 1 32 0 1054 203 18 5 chr15 53596062 53596279 -47784242 - L1MD1 LINE L1 -14 6228 6009 2086 133 0 10 chr15 53596859 53597160 -47783361 + AluSx SINE Alu 1 298 -14 2093 120 0 3 chr15 53597977 53598268 -47782253 + AluSx SINE Alu 6 295 -17 845 257 10 5 chr15 53598641 53598847 -47781674 + MIR SINE MIR 32 238 -24 362 286 136 0 chr15 53599214 53599368 -47781153 - L1ME4a LINE L1 0 6121 5947 321 249 72 64 chr15 53599393 53599642 -47780879 - L1ME4a LINE L1 -225 5896 5646 587 294 41 5 chr15 53600005 53600202 -47780319 + MIR SINE MIR 1 204 -58 282 303 0 0 chr15 53600314 53600390 -47780131 - MIR SINE MIR -1 261 186 438 225 70 2 chr15 53602707 53602976 -47777545 + MER46C DNA MER2_type 2 334 -4 189 0 0 0 chr15 53604504 53604525 -47775996 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1669 145 72 4 chr15 53604529 53604791 -47775730 - AluSg SINE Alu -30 280 1 394 254 45 27 chr15 53605429 53605591 -47774930 + MIR SINE MIR 20 184 -62 34 89 0 0 chr15 53605810 53605900 -47774621 + AT_rich Low_complexity Low_complexity 1 90 0 934 204 0 0 chr15 53607175 53607356 -47773165 - MLT1B LTR MaLR 0 390 210 6316 150 22 48 chr15 53607423 53609306 -47771215 - L1PB1 LINE L1 -1 6150 4276 494 127 25 0 chr15 53609306 53609385 -47771136 - AluSg/x SINE Alu -17 292 212 6316 150 22 48 chr15 53609385 53609963 -47770558 - L1PB1 LINE L1 -1875 4276 3684 243 125 0 0 chr15 53609963 53610003 -47770518 + (T)n Simple_repeat Simple_repeat 1 40 0 853 187 0 145 chr15 53610013 53610102 -47770419 - L1PB1 LINE L1 -2394 3752 3652 2090 120 30 0 chr15 53610102 53610401 -47770120 - AluSc SINE Alu -1 308 1 853 187 0 145 chr15 53610401 53610643 -47769878 - L1PB1 LINE L1 -2494 3652 3469 592 197 15 36 chr15 53610650 53610787 -47769734 - MLT1B LTR MaLR -240 134 1 203 333 44 11 chr15 53611192 53611282 -47769239 + L3 LINE CR1 1251 1343 -234 216 0 0 0 chr15 53611910 53611934 -47768587 + (T)n Simple_repeat Simple_repeat 1 24 0 974 156 0 6 chr15 53612385 53612564 -47767957 + CT-rich Low_complexity Low_complexity 3 180 0 503 228 18 12 chr15 53612526 53612697 -47767824 + C-rich Low_complexity Low_complexity 5 176 0 * 1462 201 24 41 chr15 53612709 53613003 -47767518 - AluJo SINE Alu -23 289 1 24 0 0 0 chr15 53613003 53613027 -47767494 + AT_rich Low_complexity Low_complexity 1 24 0 1892 156 7 7 chr15 53613027 53613316 -47767205 + AluJb SINE Alu 1 289 -23 2212 103 3 7 chr15 53613316 53613616 -47766905 - AluSq SINE Alu -14 299 1 380 287 108 30 chr15 53615414 53615581 -47764940 - MIR SINE MIR -30 232 53 425 263 25 69 chr15 53615782 53615942 -47764579 - MER5B DNA MER1_type -25 153 1 773 195 84 20 chr15 53616866 53617117 -47763404 - L1MEc LINE L1 -1576 4639 4373 347 313 38 0 chr15 53617118 53617249 -47763272 - L1MEc LINE L1 -2775 3440 3305 2386 291 78 30 chr15 53617251 53617638 -47762883 - L1MEc LINE L1 -4579 1817 1450 1357 236 37 55 chr15 53617638 53618041 -47762480 + MSTD LTR MaLR 1 396 0 2386 291 78 30 chr15 53618041 53618741 -47761780 - L1MEc LINE L1 -4946 1450 785 2038 147 10 0 chr15 53618741 53619040 -47761481 - AluSx SINE Alu -10 302 1 2386 291 78 30 chr15 53619040 53619655 -47760866 - L1MEc LINE L1 -5611 785 32 992 123 0 0 chr15 53620064 53620202 -47760319 - FRAM SINE Alu -12 164 27 21 57 0 0 chr15 53621272 53621307 -47759214 + AT_rich Low_complexity Low_complexity 1 35 0 323 358 75 0 chr15 53621577 53621711 -47758810 - L2 LINE L2 -7 3265 3122 7945 232 72 59 chr15 53621992 53622162 -47758359 - L1ME1 LINE L1 -92 6143 5977 2213 105 0 7 chr15 53622162 53622466 -47758055 - AluSx SINE Alu -8 304 3 7945 232 72 59 chr15 53622466 53622688 -47757833 - L1ME1 LINE L1 -258 5977 5759 2312 110 3 0 chr15 53622688 53622998 -47757523 - AluSp SINE Alu -2 311 1 7945 232 72 59 chr15 53622998 53623603 -47756918 - L1ME1 LINE L1 -476 5759 5163 1641 167 28 21 chr15 53623603 53623890 -47756631 - AluJb SINE Alu -23 289 1 7945 232 72 59 chr15 53623890 53626208 -47754313 - L1ME1 LINE L1 -1072 5163 2876 6679 62 24 1 chr15 53626208 53627507 -47753014 + L1PA6 LINE L1 4837 6154 0 7945 232 72 59 chr15 53627507 53628847 -47751674 - L1ME1 LINE L1 -3359 2876 1554 1214 218 156 34 chr15 53628847 53629200 -47751321 + MSTD LTR MaLR 1 396 0 7945 232 72 59 chr15 53629200 53630405 -47750116 - L1ME1 LINE L1 -4681 1554 37 661 206 97 7 chr15 53630410 53630565 -47749956 - MER3 DNA MER1_type -85 124 3 186 43 0 0 chr15 53630599 53630622 -47749899 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 333 0 0 0 chr15 53630621 53630658 -47749863 + (TG)n Simple_repeat Simple_repeat 1 37 0 726 146 0 66 chr15 53630675 53630812 -47749709 + FLAM_C SINE Alu 4 131 -2 320 207 61 37 chr15 53631055 53631137 -47749384 + L2 LINE L2 3218 3301 -12 479 79 53 0 chr15 53631914 53631990 -47748531 + MADE1 DNA Mariner 1 80 0 2183 127 0 0 chr15 53632373 53632672 -47747849 - AluSx SINE Alu -13 299 1 2180 80 49 0 chr15 53632800 53633088 -47747433 + AluSq SINE Alu 1 302 -11 468 188 59 155 chr15 53633576 53633803 -47746718 - MER112 DNA MER1_type -13 247 49 2402 27 41 10 chr15 53633803 53634098 -47746423 + AluY SINE Alu 1 304 -7 468 188 59 155 chr15 53634098 53634141 -47746380 - MER112 DNA MER1_type -211 49 3 270 265 12 36 chr15 53634581 53634664 -47745857 + MIR3 SINE MIR 99 179 -29 198 0 0 0 chr15 53634970 53634992 -47745529 + (T)n Simple_repeat Simple_repeat 1 22 0 638 265 88 0 chr15 53636917 53637098 -47743423 - MER105 DNA DNA -4 200 4 279 62 125 0 chr15 53638156 53638204 -47742317 + MADE1 DNA Mariner 1 54 -26 442 19 0 0 chr15 53638279 53638332 -47742189 + MADE1 DNA Mariner 28 80 0 2049 110 4 0 chr15 53638783 53639064 -47741457 + AluSx SINE Alu 1 282 -30 1992 121 0 4 chr15 53639892 53640198 -47740323 - AluSx SINE Alu 0 307 3 753 199 115 0 chr15 53640308 53640464 -47740057 - FAM SINE Alu -1 174 1 547 236 341 56 chr15 53640553 53640617 -47739904 - L2 LINE L2 -531 2783 2738 4143 73 42 2 chr15 53640617 53640804 -47739717 - MER4A LTR ERV1 -1 599 421 180 0 0 0 chr15 53640804 53640824 -47739697 + (GTTTG)n Simple_repeat Simple_repeat 4 23 0 4143 73 42 2 chr15 53640824 53641212 -47739309 - MER4A LTR ERV1 -179 421 1 547 236 341 56 chr15 53641212 53641479 -47739042 - L2 LINE L2 -576 2738 2548 853 229 0 0 chr15 53641479 53641645 -47738876 - FRAM SINE Alu 0 166 1 547 236 341 56 chr15 53641645 53641883 -47738638 - L2 LINE L2 -766 2548 2050 2402 92 0 0 chr15 53642143 53642446 -47738075 + AluSg SINE Alu 1 303 -7 1739 159 23 17 chr15 53642711 53643012 -47737509 + AluJo SINE Alu 1 303 -9 1877 136 9 28 chr15 53643085 53643402 -47737119 + AluSx SINE Alu 1 311 -1 750 93 0 0 chr15 53643445 53643553 -47736968 - MER4B LTR ERV1 -499 111 4 662 157 71 79 chr15 53643555 53643695 -47736826 - Tigger7 DNA MER2_type -503 202 64 376 232 0 0 chr15 53643699 53643768 -47736753 + Tigger7 DNA MER2_type 2 70 -269 1205 140 14 79 chr15 53643768 53644047 -47736474 + L1MB8 LINE L1 5918 6178 0 3963 220 96 46 chr15 53644118 53646410 -47734111 + L1MC4 LINE L1 5520 8041 -1 327 332 47 47 chr15 53646526 53646737 -47733784 - MIR SINE MIR -32 230 20 197 33 33 0 chr15 53647577 53647607 -47732914 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2075 221 31 91 chr15 53647722 53648165 -47732356 + L1MC5 LINE L1 6692 7065 -896 2097 83 0 24 chr15 53648165 53648453 -47732068 - AluY SINE Alu -2 309 29 2075 221 31 91 chr15 53648453 53648825 -47731696 + L1MC5 LINE L1 7065 7458 -503 904 128 70 13 chr15 53648865 53649021 -47731500 - MER3 DNA MER1_type -86 123 6 538 217 26 9 chr15 53649025 53649140 -47731381 - MLT1B LTR MaLR -3 387 271 1411 174 23 12 chr15 53649195 53649454 -47731067 + AluJo SINE Alu 1 262 -50 228 67 0 0 chr15 53649490 53649520 -47731001 + (TG)n Simple_repeat Simple_repeat 1 30 0 811 245 27 5 chr15 53649751 53649935 -47730586 - MER5A DNA MER1_type -1 188 1 25 31 0 0 chr15 53649938 53649970 -47730551 + AT_rich Low_complexity Low_complexity 1 32 0 369 109 178 59 chr15 53650840 53650941 -47729580 + MER3 DNA MER1_type 96 208 -1 22 0 0 0 chr15 53651321 53651343 -47729178 + AT_rich Low_complexity Low_complexity 1 22 0 761 178 29 58 chr15 53652021 53652195 -47728326 + AluJo SINE Alu 1 169 -143 912 225 83 77 chr15 53652212 53652537 -47727984 + MLT1A1 LTR MaLR 39 365 0 910 240 47 78 chr15 53653120 53653529 -47726992 - MSTD LTR MaLR 0 396 1 2189 151 91 7 chr15 53653537 53653942 -47726579 - Tigger2 DNA MER2_type 0 2718 2280 412 131 33 0 chr15 53653950 53654011 -47726510 - Tigger2 DNA MER2_type -2655 63 1 318 292 42 10 chr15 53654049 53654145 -47726376 - L2 LINE L2 0 3272 3174 231 114 0 0 chr15 53655258 53655293 -47725228 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 348 175 175 0 chr15 53655573 53655653 -47724868 - MER46C DNA MER2_type -221 117 24 1813 168 7 10 chr15 53655663 53655973 -47724548 + AluJo SINE Alu 1 309 -3 396 0 0 0 chr15 53656194 53656238 -47724283 + (TG)n Simple_repeat Simple_repeat 2 45 0 2173 72 0 36 chr15 53659053 53659359 -47721162 - AluSq SINE Alu -18 295 1 1564 145 105 34 chr15 53660125 53660449 -47720072 - MER7A DNA MER2_type -1 345 1 244 194 139 69 chr15 53660970 53661114 -47719407 - L1ME4a LINE L1 -61 6060 5907 499 144 21 10 chr15 53661212 53661309 -47719212 + MER58 DNA MER1_type 2322 2419 -1 330 67 0 0 chr15 53662173 53662218 -47718303 + (TG)n Simple_repeat Simple_repeat 1 45 0 1810 177 0 10 chr15 53662730 53663041 -47717480 - AluJb SINE Alu -4 308 1 1394 210 3 53 chr15 53663919 53664238 -47716283 + AluJb SINE Alu 2 304 -8 2803 219 70 86 chr15 53665611 53666943 -47713578 + L1MDb LINE L1 782 2048 -4358 274 293 53 8 chr15 53666969 53667102 -47713419 + L1MDb LINE L1 2135 2273 -4133 5147 182 29 24 chr15 53667104 53668239 -47712282 - L1PA16 LINE L1 -1363 4783 3643 * 5294 166 36 5 chr15 53668224 53669582 -47710939 + L1PA16 LINE L1 4766 6159 -7 1579 247 121 52 chr15 53669576 53670122 -47710399 + L1MDb LINE L1 2285 2792 -3614 * 2129 130 0 3 chr15 53670122 53670423 -47710098 + AluSx SINE Alu 3 302 -10 1579 247 121 52 chr15 53670423 53670862 -47709659 + L1MDb LINE L1 2792 3199 -3207 2465 58 0 0 chr15 53670862 53671155 -47709366 + AluY SINE Alu 1 293 -18 1579 247 121 52 chr15 53671155 53671528 -47708993 + L1MDb LINE L1 3199 3736 -2670 1906 146 0 0 chr15 53671537 53671831 -47708690 + AluSx SINE Alu 1 294 -18 549 127 0 0 chr15 53671867 53671946 -47708575 - AluJ/FLAM SINE Alu -233 79 1 746 219 7 7 chr15 53672133 53672284 -47708237 - FRAM SINE Alu -15 151 1 22 35 0 0 chr15 53672294 53672323 -47708198 + AT_rich Low_complexity Low_complexity 1 29 0 971 209 125 6 chr15 53672333 53672644 -47707877 + L1M4 LINE L1 2871 3218 -2928 34 0 0 0 chr15 53672924 53672958 -47707563 + AT_rich Low_complexity Low_complexity 1 34 0 2028 101 7 11 chr15 53672958 53673234 -47707287 - AluSx SINE Alu -11 301 27 323 250 254 11 chr15 53673321 53673601 -47706920 - L1MC4 LINE L1 -197 7845 7498 2693 204 88 3 chr15 53675128 53675730 -47704791 + MER82 DNA MER2_type 1 653 0 221 341 8 16 chr15 53676140 53676171 -47704350 - L3 LINE CR1 -736 841 811 1955 120 3 58 chr15 53676171 53676350 -47704171 - AluSq SINE Alu -5 308 154 2335 89 0 3 chr15 53676350 53676654 -47703867 - AluY SINE Alu -8 303 1 1955 120 3 58 chr15 53676654 53676800 -47703721 - AluSq SINE Alu -159 154 1 221 341 8 16 chr15 53676800 53676891 -47703630 - L3 LINE CR1 -766 811 720 288 204 150 18 chr15 53677152 53677265 -47703256 + MER103 DNA DNA 5 132 -34 284 330 20 0 chr15 53677385 53677485 -47703036 - L3 LINE CR1 -225 1352 1251 1839 164 0 10 chr15 53677509 53677813 -47702708 - AluJo SINE Alu -9 303 3 1612 93 0 0 chr15 53678257 53678462 -47702059 - AluSq SINE Alu -20 293 89 571 115 0 0 chr15 53678462 53678540 -47701981 + AluS SINE Alu 7 84 -228 1771 166 7 3 chr15 53678580 53678864 -47701657 + AluSx SINE Alu 1 285 -27 566 225 42 0 chr15 53679468 53679588 -47700933 + MIR3 SINE MIR 61 185 -23 1002 108 0 32 chr15 53679704 53679889 -47700632 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 234 105 0 0 chr15 53679891 53679929 -47700592 + (TC)n Simple_repeat Simple_repeat 1 38 0 1345 168 7 69 chr15 53679929 53680220 -47700301 - AluJo SINE Alu -39 273 1 766 186 145 0 chr15 53680321 53680466 -47700055 - FRAM SINE Alu -12 164 1 1613 189 3 10 chr15 53681055 53681356 -47699165 - AluJb SINE Alu -13 299 1 465 143 0 0 chr15 53682231 53682301 -47698220 + AluJ/FLAM SINE Alu 21 90 -222 25 51 0 0 chr15 53682364 53682403 -47698118 + AT_rich Low_complexity Low_complexity 1 39 0 2116 166 47 10 chr15 53683088 53683497 -47697024 + MSTB LTR MaLR 1 424 -2 687 269 48 0 chr15 53684458 53684625 -47695896 - LTR16A LTR ERVL -5 445 271 281 200 0 0 chr15 53684660 53684705 -47695816 - LTR16A LTR ERVL -265 185 141 347 203 0 29 chr15 53685134 53685203 -47695318 - L2 LINE L2 -1 3312 3246 1837 165 0 33 chr15 53685263 53685566 -47694955 - AluSx SINE Alu -19 293 1 695 216 32 16 chr15 53685707 53685892 -47694629 - Charlie2 DNA MER1_type -64 2798 2611 3058 246 72 32 chr15 53685922 53686809 -47693712 + HERVL40 LTR ERVL 3517 4446 -1084 465 19 0 0 chr15 53686809 53686863 -47693658 + (TTA)n Simple_repeat Simple_repeat 1 54 0 3058 246 72 32 chr15 53686863 53686923 -47693598 + HERVL40 LTR ERVL 4446 4502 -1028 1811 168 7 0 chr15 53686955 53687235 -47693286 + AluSx SINE Alu 3 284 -28 232 183 0 67 chr15 53687495 53687555 -47692966 + LTR40a LTR ERVL 457 512 -7 256 309 33 88 chr15 53687624 53687805 -47692716 + HERVL40 LTR ERVL 2502 2672 -365 519 363 7 29 chr15 53687965 53688378 -47692143 + MER89-int LTR ERV1 6081 6484 -317 * 1219 256 10 3 chr15 53688270 53688616 -47691905 + HERVL40 LTR ERVL 2785 5530 0 2285 214 42 8 chr15 53688616 53689111 -47691410 + LTR40a LTR ERVL 1 512 -7 853 219 42 14 chr15 53689274 53689489 -47691032 + MER58A DNA MER1_type 4 224 0 192 77 0 0 chr15 53689663 53689689 -47690832 + (T)n Simple_repeat Simple_repeat 1 26 0 2265 91 106 53 chr15 53690043 53690399 -47690122 - LTR56 LTR ERV1 0 445 62 1547 170 78 0 chr15 53690399 53690682 -47689839 - AluJb SINE Alu -3 309 5 2265 91 106 53 chr15 53690682 53690742 -47689779 - LTR56 LTR ERV1 -383 62 7 2220 185 56 116 chr15 53691273 53692047 -47688474 - LTR8A LTR ERV1 0 727 1 546 68 0 0 chr15 53693319 53693392 -47687129 + Alu SINE Alu 4 76 -235 1165 179 51 30 chr15 53693635 53693869 -47686652 - MER8 DNA MER2_type 0 239 1 6070 53 1 8 chr15 53693988 53694000 -47686521 - L1PA6 LINE L1 -3 6151 6140 243 0 0 0 chr15 53694000 53694027 -47686494 + (TATG)n Simple_repeat Simple_repeat 2 28 0 6070 53 1 8 chr15 53694027 53694791 -47685730 - L1PA6 LINE L1 -14 6140 5380 333 296 72 8 chr15 53695202 53695327 -47685194 - MIR SINE MIR -13 249 117 25 0 0 0 chr15 53695508 53695533 -47684988 + AT_rich Low_complexity Low_complexity 1 25 0 1927 184 18 6 chr15 53695730 53696056 -47684465 - MER1B DNA MER1_type -9 330 1 1936 145 30 0 chr15 53696164 53696461 -47684060 - AluSx SINE Alu -6 306 1 1880 131 3 20 chr15 53697029 53697327 -47683194 - AluSx SINE Alu -19 293 1 710 298 144 26 chr15 53697703 53698028 -47682493 + L3 LINE CR1 936 1344 -233 792 200 122 34 chr15 53698028 53698233 -47682288 - MER58A DNA MER1_type 0 224 2 710 298 144 26 chr15 53698233 53698414 -47682107 + L3 LINE CR1 1344 1502 -75 1391 211 53 30 chr15 53698702 53699039 -47681482 + MER2 DNA MER2_type 1 345 0 2151 239 114 42 chr15 53699039 53699621 -47680900 - L1ME2 LINE L1 -23 6141 5602 1997 133 42 36 chr15 53699621 53699909 -47680612 + THE1B LTR MaLR 1 293 -71 2045 121 24 13 chr15 53699909 53700207 -47680314 - AluSx SINE Alu -11 301 1 1997 133 42 36 chr15 53700207 53700278 -47680243 + THE1B LTR MaLR 293 362 -2 2151 239 114 42 chr15 53700278 53700748 -47679773 - L1ME2 LINE L1 -562 5602 5167 1837 139 10 7 chr15 53700748 53701042 -47679479 - AluSx SINE Alu -14 298 4 2151 239 114 42 chr15 53701042 53701427 -47679094 - L1ME2 LINE L1 -997 5167 4583 1653 230 49 37 chr15 53701539 53702074 -47678447 - L1ME1 LINE L1 -18 6148 5608 210 143 0 0 chr15 53702091 53702126 -47678395 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 195 129 0 0 chr15 53702168 53702199 -47678322 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1316 181 69 43 chr15 53702201 53702478 -47678043 - AluJo SINE Alu -28 284 1 23 0 0 0 chr15 53702478 53702501 -47678020 + AT_rich Low_complexity Low_complexity 1 23 0 1176 222 72 71 chr15 53704215 53704387 -47676134 + L1MDb LINE L1 782 952 -5454 1692 145 0 56 chr15 53704387 53704691 -47675830 - AluJb SINE Alu -25 287 1 1176 222 72 71 chr15 53704691 53705263 -47675258 + L1MDb LINE L1 952 1456 -4950 21 0 0 0 chr15 53705290 53705311 -47675210 + AT_rich Low_complexity Low_complexity 1 21 0 320 340 60 32 chr15 53706598 53706783 -47673738 - MIR SINE MIR -71 191 2 331 279 95 51 chr15 53707010 53707168 -47673353 - MIR SINE MIR -46 216 52 1818 159 3 17 chr15 53707218 53707514 -47673007 - AluJo SINE Alu -20 292 1 1358 168 171 17 chr15 53707747 53708039 -47672482 + MER1B DNA MER1_type 1 337 0 1769 169 81 35 chr15 53708299 53708745 -47671776 - L1M4 LINE L1 -523 5661 5184 1906 104 31 4 chr15 53709116 53709375 -47671146 + AluSx SINE Alu 4 269 -43 246 32 0 0 chr15 53709376 53709407 -47671114 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 1479 171 62 4 chr15 53710107 53710382 -47670139 + AluJo SINE Alu 4 294 -18 219 69 0 0 chr15 53710401 53710430 -47670091 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 21 0 0 0 chr15 53713966 53713987 -47666534 + AT_rich Low_complexity Low_complexity 1 21 0 647 78 10 29 chr15 53714054 53714157 -47666364 - AluSp/q SINE Alu -3 310 210 1526 203 4 4 chr15 53714380 53714661 -47665860 - AluJo SINE Alu -31 281 1 3586 161 44 87 chr15 53714709 53715570 -47664951 - L1MB1 LINE L1 0 6168 5345 216 0 0 0 chr15 53716145 53716169 -47664352 + (A)n Simple_repeat Simple_repeat 1 24 0 798 172 0 0 chr15 53767006 53767134 -47613387 - FLAM_C SINE Alu -3 130 3 239 343 0 0 chr15 53767135 53767205 -47613316 - MER5A DNA MER1_type -113 76 7 2651 237 59 52 chr15 53768352 53768768 -47611753 + L1M4 LINE L1 2403 2814 -3332 1104 186 14 0 chr15 53768768 53768988 -47611533 + L1PA14 LINE L1 5939 6161 0 2651 237 59 52 chr15 53768988 53769018 -47611503 + L1M4 LINE L1 2814 2842 -3304 1457 148 89 44 chr15 53769018 53769288 -47611233 + AluJo SINE Alu 6 287 -25 2651 237 59 52 chr15 53769288 53769889 -47610632 + L1M4 LINE L1 2842 3459 -2687 1175 121 6 0 chr15 53769900 53770074 -47610447 - AluSg/x SINE Alu -10 302 128 438 337 29 12 chr15 53771231 53771403 -47609118 + MIR SINE MIR 75 249 -13 949 188 83 0 chr15 53774133 53774325 -47606196 + MER3 DNA MER1_type 2 209 0 200 148 0 66 chr15 53775065 53775098 -47605423 + (TTAA)n Simple_repeat Simple_repeat 4 33 -27 1285 31 0 6 chr15 53775098 53775258 -47605263 + L1PA4 LINE L1 5997 6155 0 200 148 0 66 chr15 53775258 53775285 -47605236 + (TTAA)n Simple_repeat Simple_repeat 33 60 0 2379 77 0 37 chr15 53775573 53775896 -47604625 + AluY SINE Alu 1 311 0 252 0 0 0 chr15 53777446 53777474 -47603047 + (A)n Simple_repeat Simple_repeat 1 28 0 355 293 169 26 chr15 53777848 53778069 -47602452 + MIR SINE MIR 10 256 -6 443 152 0 0 chr15 53778426 53778492 -47602029 - AluSq/x SINE Alu -203 109 44 287 241 153 53 chr15 53778493 53778663 -47601858 - L1ME LINE L1 -294 5827 5641 308 203 14 54 chr15 53778787 53778861 -47601660 - AluJo SINE Alu -128 174 104 2215 120 0 0 chr15 53779643 53779942 -47600579 - AluSx SINE Alu -13 299 1 303 274 20 20 chr15 53780217 53780319 -47600202 + MER58 DNA MER1_type 2318 2419 -1 218 286 36 0 chr15 53780627 53780683 -47599838 + (CGTG)n Simple_repeat Simple_repeat 2 59 0 1743 171 9 22 chr15 53780748 53781063 -47599458 + AluJo SINE Alu 1 311 -1 23 0 0 0 chr15 53781405 53781428 -47599093 + AT_rich Low_complexity Low_complexity 1 23 0 769 180 0 0 chr15 53781706 53781834 -47598687 + FLAM_C SINE Alu 12 139 -4 47 53 0 0 chr15 53782752 53782827 -47597694 + AT_rich Low_complexity Low_complexity 1 75 0 548 277 14 7 chr15 53783398 53783546 -47596975 + MLT1K LTR MaLR 434 582 -6 1999 122 0 80 chr15 53784045 53784382 -47596139 - AluSx SINE Alu -2 310 1 1634 156 52 3 chr15 53784704 53784992 -47595529 - AluJb SINE Alu -4 308 7 1688 143 85 37 chr15 53785463 53785791 -47594730 - MER2 DNA MER2_type 0 344 1 408 340 0 21 chr15 53786209 53786350 -47594171 + MIR3 SINE MIR 5 142 -66 1334 184 121 18 chr15 53788068 53788340 -47592181 + AluJo SINE Alu 1 300 -12 401 80 0 0 chr15 53790876 53790926 -47589595 - AluJ/FLAM SINE Alu -251 61 12 180 0 0 0 chr15 53790960 53790980 -47589541 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 270 233 50 0 chr15 53790984 53791044 -47589477 - L2 LINE L2 -230 3083 3021 640 169 153 0 chr15 53791056 53791180 -47589341 + FRAM SINE Alu 18 160 -16 1523 169 43 22 chr15 53791353 53791631 -47588890 + AluJb SINE Alu 1 284 -28 1946 221 82 126 chr15 53792732 53793627 -47586894 + L1MEc LINE L1 130 1062 -5334 624 27 0 0 chr15 53793627 53793701 -47586820 + (TTCC)n Simple_repeat Simple_repeat 1 74 0 1946 221 82 126 chr15 53793701 53793734 -47586787 + L1MEc LINE L1 1062 1095 -5301 1493 197 17 20 chr15 53793734 53794034 -47586487 - AluJo SINE Alu -13 299 1 1946 221 82 126 chr15 53794034 53794187 -47586334 + L1MEc LINE L1 1095 1165 -5231 2159 94 7 27 chr15 53794238 53794536 -47585985 + AluSc SINE Alu 1 292 -17 1598 250 131 52 chr15 53794579 53795988 -47584533 + L1MCc LINE L1 853 2149 -4973 1168 193 52 0 chr15 53795988 53796201 -47584320 - MER58A DNA MER1_type 0 224 1 1598 250 131 52 chr15 53796201 53796498 -47584023 + L1MCc LINE L1 2149 2421 -4701 1378 168 118 11 chr15 53796498 53796778 -47583743 + AluJo SINE Alu 1 310 -2 1598 250 131 52 chr15 53796778 53796868 -47583653 + L1MCc LINE L1 2421 2976 -4146 692 264 145 4 chr15 53797671 53797898 -47582623 - MIR SINE MIR 0 262 4 222 156 0 0 chr15 53797937 53797982 -47582539 + CT-rich Low_complexity Low_complexity 4 48 0 1436 155 68 22 chr15 53798265 53798543 -47581978 + AluJo SINE Alu 1 291 -11 369 255 43 106 chr15 53799037 53799198 -47581323 - MIR3 SINE MIR -33 175 25 2165 125 0 10 chr15 53800303 53800615 -47579906 - AluSx SINE Alu -3 309 1 1795 157 37 3 chr15 53800937 53801231 -47579290 - AluJb SINE Alu -8 304 1 2555 92 31 3 chr15 53802894 53803254 -47577267 - THE1C LTR MaLR -5 370 1 1803 162 26 16 chr15 53803433 53803742 -47576779 - AluJo SINE Alu 0 312 1 869 198 63 38 chr15 53804352 53804589 -47575932 + Charlie4 DNA MER1_type 3 245 -1716 2248 107 0 0 chr15 53805650 53805948 -47574573 + AluSg SINE Alu 5 302 -8 1535 197 14 24 chr15 53806177 53806467 -47574054 + AluJo SINE Alu 8 294 -18 1076 173 10 43 chr15 53806663 53806871 -47573650 - LTR48B LTR ERV1 -441 203 3 2823 77 11 11 chr15 53807027 53807402 -47573119 - THE1C LTR MaLR 0 375 1 2160 121 3 0 chr15 53807424 53807729 -47572792 - AluSx SINE Alu -2 310 5 269 256 184 56 chr15 53807742 53807879 -47572642 + L1ME LINE L1 5521 5639 -482 294 73 0 0 chr15 53807879 53807920 -47572601 + (TG)n Simple_repeat Simple_repeat 2 42 0 269 256 184 56 chr15 53807920 53808048 -47572473 + L1ME LINE L1 5639 5820 -301 2244 101 0 0 chr15 53808292 53808588 -47571933 - AluY SINE Alu -15 296 1 1094 175 57 0 chr15 53808775 53808969 -47571552 - AluJo SINE Alu -107 205 1 1880 177 7 0 chr15 53810031 53810330 -47570191 + AluJo SINE Alu 1 301 -11 218 152 0 22 chr15 53810330 53810376 -47570145 + GA-rich Low_complexity Low_complexity 1 45 0 461 203 42 157 chr15 53810668 53810783 -47569738 - MER63A DNA MER1_type -1478 210 134 646 256 0 0 chr15 53810783 53810916 -47569605 + FLAM_A SINE Alu 1 133 0 461 203 42 157 chr15 53810916 53811036 -47569485 - MER63A DNA MER1_type -1554 134 2 2173 94 0 11 chr15 53811513 53811822 -47568699 + AluSx SINE Alu 1 306 0 183 296 0 19 chr15 53812094 53812148 -47568373 + L2 LINE L2 3210 3262 -10 * 228 286 26 13 chr15 53812143 53812220 -47568301 + MIR3 SINE MIR 12 89 -119 24 0 0 0 chr15 53812301 53812325 -47568196 + AT_rich Low_complexity Low_complexity 1 24 0 255 158 237 26 chr15 53812336 53812412 -47568109 + Charlie1 DNA MER1_type 2670 2761 0 232 295 246 6 chr15 53812748 53812924 -47567597 - MIR SINE MIR -8 254 38 504 116 186 0 chr15 53813027 53813113 -47567408 - AluJb SINE Alu -16 296 195 224 171 0 0 chr15 53813123 53813158 -47567363 + MIR SINE MIR 37 71 -137 325 73 0 0 chr15 53813301 53813342 -47567179 - Alu SINE Alu -267 41 1 518 282 5 35 chr15 53813344 53813554 -47566967 + L1M4 LINE L1 3465 3665 -2481 1799 259 71 8 chr15 53813557 53814201 -47566320 + L1M4 LINE L1 3796 4480 -1666 287 134 0 104 chr15 53814245 53814312 -47566209 + FLAM SINE Alu 75 117 -16 417 214 16 40 chr15 53814316 53814442 -47566079 + L1M4 LINE L1 5158 5280 -866 1296 171 8 61 chr15 53814443 53814707 -47565814 + AluJo SINE Alu 44 293 -19 248 278 62 72 chr15 53814942 53815039 -47565482 + L3 LINE CR1 965 1060 -517 375 341 37 47 chr15 53815096 53815392 -47565129 + L3 LINE CR1 1252 1544 -33 1008 167 6 0 chr15 53815392 53815548 -47564973 + FRAM SINE Alu 4 160 -16 215 371 10 10 chr15 53815586 53815683 -47564838 - L2 LINE L2 -2030 1284 1188 383 304 0 0 chr15 53815909 53816001 -47564520 - MIR SINE MIR -105 157 66 217 218 0 55 chr15 53816391 53816446 -47564075 + L2 LINE L2 3213 3264 -8 2152 125 0 3 chr15 53816602 53816905 -47563616 - AluSq SINE Alu -9 304 3 270 0 0 0 chr15 53816945 53816975 -47563546 + (GA)n Simple_repeat Simple_repeat 2 31 0 1117 158 62 10 chr15 53817019 53817262 -47563259 - AluJb SINE Alu 0 312 86 309 209 12 23 chr15 53817552 53817638 -47562883 + L1MC5 LINE L1 7832 7916 -45 1753 109 3 136 chr15 53818544 53818874 -47561647 + AluSg SINE Alu 3 288 -22 2592 55 0 0 chr15 53820143 53820450 -47560071 - AluY SINE Alu -4 307 1 593 225 62 0 chr15 53820595 53820724 -47559797 - FLAM_A SINE Alu -4 138 2 21 36 0 0 chr15 53821631 53821659 -47558862 + AT_rich Low_complexity Low_complexity 1 28 0 375 215 47 9 chr15 53822476 53822583 -47557938 - L1MC4 LINE L1 0 8042 7932 260 313 239 17 chr15 53823047 53823223 -47557298 - MIR SINE MIR -28 234 20 650 189 24 65 chr15 53823494 53823663 -47556858 - MER58A DNA MER1_type -18 206 45 22 0 0 0 chr15 53824398 53824420 -47556101 + AT_rich Low_complexity Low_complexity 1 22 0 7684 199 46 47 chr15 53824663 53824951 -47555570 + L1MB5 LINE L1 2936 3223 -2951 1651 181 20 3 chr15 53824951 53825244 -47555277 + AluJb SINE Alu 11 308 -4 7684 199 46 47 chr15 53825244 53825553 -47554968 + L1MB5 LINE L1 3223 3531 -2643 1704 189 7 0 chr15 53825553 53825849 -47554672 + AluJb SINE Alu 1 298 -14 7684 199 46 47 chr15 53825849 53826235 -47554286 + L1MB5 LINE L1 3531 3916 -2258 1819 158 21 0 chr15 53826235 53826526 -47553995 + AluSx SINE Alu 1 297 -15 7684 199 46 47 chr15 53826526 53826747 -47553774 + L1MB5 LINE L1 3916 4136 -2038 1446 121 31 0 chr15 53826747 53826970 -47553551 + MER30 DNA MER1_type 1 230 0 7684 199 46 47 chr15 53826970 53826986 -47553535 + L1MB5 LINE L1 4136 4151 -2023 2163 111 0 26 chr15 53826986 53827292 -47553229 + AluSg SINE Alu 1 298 -12 7684 199 46 47 chr15 53827292 53828139 -47552382 + L1MB5 LINE L1 4151 4997 -1177 1706 175 7 7 chr15 53828139 53828425 -47552096 - AluJo SINE Alu -26 286 1 7684 199 46 47 chr15 53828425 53829598 -47550923 + L1MB5 LINE L1 4997 6174 0 292 300 117 8 chr15 53829977 53830097 -47550424 + L3 LINE CR1 348 480 -1097 511 266 16 33 chr15 53830174 53830358 -47550163 + L3 LINE CR1 712 892 -685 1642 204 10 3 chr15 53830518 53830826 -47549695 + AluJo SINE Alu 1 310 -2 294 301 150 9 chr15 53830853 53830966 -47549555 + L3 LINE CR1 1447 1575 -2 2184 114 13 0 chr15 53830992 53831290 -47549231 + AluSx SINE Alu 1 302 -10 247 113 38 0 chr15 53833777 53833830 -47546691 + (TA)n Simple_repeat Simple_repeat 1 55 0 300 125 25 100 chr15 53833833 53833913 -47546608 + L1MCa LINE L1 1995 2068 -4358 328 305 21 0 chr15 53833931 53834026 -47546495 + L1MC4 LINE L1 6607 6703 -1339 1649 181 0 17 chr15 53834036 53834334 -47546187 - AluJb SINE Alu -19 293 1 1289 179 84 34 chr15 53834336 53834633 -47545888 - AluJb SINE Alu 0 312 1 189 143 0 29 chr15 53835989 53836024 -47544497 + L2 LINE L2 3231 3264 -8 519 206 37 136 chr15 53836101 53836344 -47544177 - MIR SINE MIR -40 222 4 279 79 0 0 chr15 53838006 53838044 -47542477 + (TG)n Simple_repeat Simple_repeat 2 39 0 354 361 81 47 chr15 53839546 53839867 -47540654 - L2 LINE L2 -2 3270 2939 2110 101 7 0 chr15 53839945 53840232 -47540289 + AluSp SINE Alu 18 306 -7 1122 101 63 13 chr15 53840232 53840390 -47540131 + AluSg/x SINE Alu 134 299 -13 348 305 79 45 chr15 53841045 53841222 -47539299 - L2 LINE L2 -23 3290 3108 1063 146 13 0 chr15 53841457 53841615 -47538906 + AluJo SINE Alu 1 160 -152 1926 155 3 0 chr15 53841844 53842135 -47538386 + AluSx SINE Alu 5 296 -16 1579 161 82 4 chr15 53842537 53842804 -47537717 + AluSx SINE Alu 2 289 -23 452 293 78 10 chr15 53843011 53843216 -47537305 - MARNA DNA Mariner -201 385 167 1787 182 0 0 chr15 53844017 53844303 -47536218 - AluJo SINE Alu -21 291 6 2074 118 0 13 chr15 53844589 53844893 -47535628 - AluSx SINE Alu -12 300 1 414 327 6 6 chr15 53847271 53847439 -47533082 + (CCA)n Simple_repeat Simple_repeat 1 168 0 383 271 122 0 chr15 53848265 53848372 -47532149 - MLT1L LTR MaLR -346 269 150 267 236 87 42 chr15 53850378 53850574 -47529947 + L1M1 LINE L1 5576 5785 -377 2052 153 0 0 chr15 53850576 53850877 -47529644 + AluSx SINE Alu 1 301 -11 1221 114 17 0 chr15 53850877 53851053 -47529468 + AluSg/x SINE Alu 134 312 0 21 57 0 0 chr15 53851288 53851323 -47529198 + AT_rich Low_complexity Low_complexity 1 35 0 198 0 0 0 chr15 53853057 53853079 -47527442 + (T)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr15 53853967 53853989 -47526532 + (T)n Simple_repeat Simple_repeat 1 22 0 1786 148 24 14 chr15 53855630 53855927 -47524594 + AluJo SINE Alu 11 310 -2 2301 102 0 0 chr15 53856520 53856823 -47523698 - AluSg SINE Alu -7 303 1 189 0 0 0 chr15 53857585 53857606 -47522915 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 1093 190 0 0 chr15 53857990 53858169 -47522352 - MER58A DNA MER1_type -1 223 45 1607 163 17 30 chr15 53858418 53858718 -47521803 + AluJo SINE Alu 1 296 -16 216 0 0 0 chr15 53858721 53858745 -47521776 + (TA)n Simple_repeat Simple_repeat 1 24 0 1455 177 75 11 chr15 53859069 53859334 -47521187 + AluJo SINE Alu 11 292 -20 27 0 0 0 chr15 53860116 53860143 -47520378 + AT_rich Low_complexity Low_complexity 1 27 0 307 154 0 0 chr15 53861485 53861537 -47518984 + Alu SINE Alu 247 298 -4 292 333 183 0 chr15 53863400 53863553 -47516968 + MER5A DNA MER1_type 9 189 0 334 309 35 82 chr15 53863954 53864166 -47516355 - MIR SINE MIR -44 164 2 1645 203 0 10 chr15 53864519 53864824 -47515697 + AluJb SINE Alu 2 303 -9 341 191 0 3 chr15 53865341 53865415 -47515106 + MER34C LTR ERV1 1 101 -469 371 254 52 10 chr15 53865616 53865782 -47514739 + MER34B LTR ERV1 337 492 -73 610 201 141 37 chr15 53866021 53866267 -47514254 - L1MC4 LINE L1 -116 7879 7660 1200 132 44 18 chr15 53866267 53866495 -47514026 - L1MA3 LINE L1 -14 6291 6058 610 201 141 37 chr15 53866495 53866998 -47513523 - L1MC4 LINE L1 -335 7660 6871 641 256 85 16 chr15 53866999 53867084 -47513437 - L1MD3 LINE L1 -1294 6701 6623 279 0 0 0 chr15 53867084 53867115 -47513406 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 641 256 85 16 chr15 53867115 53867275 -47513246 - L1MD3 LINE L1 -1372 6623 6439 2173 99 3 0 chr15 53867773 53868055 -47512466 + AluSp SINE Alu 3 285 -28 389 346 160 19 chr15 53868143 53868519 -47512002 + L3 LINE CR1 1063 1491 -86 283 310 150 9 chr15 53868573 53868786 -47511735 + MIR SINE MIR 6 248 -14 398 308 9 0 chr15 53868861 53868968 -47511553 + L2 LINE L2 3201 3308 -5 2211 144 20 38 chr15 53869034 53869431 -47511090 - L1MB2 LINE L1 -210 5961 5572 265 260 29 39 chr15 53869484 53869588 -47510933 + L1ME4a LINE L1 5984 6086 -35 2260 109 0 7 chr15 53871369 53871673 -47508848 - AluSg SINE Alu -8 302 1 2328 74 0 10 chr15 53872138 53872434 -47508087 + AluY SINE Alu 1 293 -18 983 234 102 0 chr15 53872479 53872735 -47507786 + AluJb SINE Alu 13 294 -18 861 208 6 0 chr15 53877253 53877412 -47503109 - FRAM SINE Alu -6 160 1 189 388 39 0 chr15 53877546 53877649 -47502872 + MIR SINE MIR 38 144 -64 593 297 59 42 chr15 53878427 53878663 -47501858 + MIR SINE MIR 1 240 -22 24 0 0 0 chr15 53878676 53878700 -47501821 + AT_rich Low_complexity Low_complexity 1 24 0 264 283 26 97 chr15 53879531 53879644 -47500877 + MIR SINE MIR 45 149 -59 220 350 49 28 chr15 53879658 53879801 -47500720 - MIR SINE MIR -6 256 111 4093 155 51 25 chr15 53879802 53879861 -47500660 + L1MB7 LINE L1 5346 5402 -782 1603 173 36 7 chr15 53879861 53880138 -47500383 - AluJb SINE Alu -27 285 1 4093 155 51 25 chr15 53880138 53880895 -47499626 + L1MB7 LINE L1 5402 6184 0 208 372 0 0 chr15 53882028 53882106 -47498415 + L2 LINE L2 3236 3313 0 2049 142 3 10 chr15 53882133 53882444 -47498077 + AluSx SINE Alu 1 309 -3 1678 172 7 40 chr15 53883289 53883591 -47496930 - AluSx SINE Alu -18 294 3 2221 80 30 13 chr15 53884570 53884869 -47495652 + AluY SINE Alu 1 304 -7 270 288 126 35 chr15 53885376 53885429 -47495092 + MER113 DNA MER1_type? 262 309 -212 1246 174 119 82 chr15 53885429 53885559 -47494962 + AluJb SINE Alu 3 127 -185 2206 61 3 61 chr15 53885559 53885872 -47494649 - AluY SINE Alu -16 295 1 1246 174 119 82 chr15 53885872 53886034 -47494487 + AluJb SINE Alu 127 306 -6 270 288 126 35 chr15 53886034 53886178 -47494343 + MER113 DNA MER1_type? 309 477 -44 310 300 163 56 chr15 53886913 53887146 -47493375 + MIR SINE MIR 3 260 -2 646 269 54 88 chr15 53887732 53888175 -47492346 - MLT1A1 LTR MaLR 0 365 1 802 218 13 0 chr15 53888536 53888692 -47491829 - AluJb SINE Alu -3 309 152 186 394 11 43 chr15 53888916 53889010 -47491511 - L2 LINE L2 -67 3205 3115 320 341 118 53 chr15 53889095 53889341 -47491180 - L2 LINE L2 -9 3263 3002 212 405 17 9 chr15 53889320 53889436 -47491085 + L2 LINE L2 3151 3267 -5 * 1477 180 6 68 chr15 53890091 53890235 -47490286 + AluSx SINE Alu 3 118 -194 261 75 0 0 chr15 53890235 53890275 -47490246 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 1477 180 6 68 chr15 53890275 53890452 -47490069 + AluSx SINE Alu 118 304 -8 342 284 65 32 chr15 53891855 53892010 -47488511 - MIR SINE MIR -20 242 83 747 190 87 49 chr15 53892209 53892393 -47488128 + AluJo SINE Alu 1 191 -121 1707 153 33 4 chr15 53892896 53893194 -47487327 + AluJb SINE Alu 2 307 0 425 324 97 5 chr15 53893327 53893543 -47486978 + MIR SINE MIR 2 237 -25 21 0 0 0 chr15 53893843 53893864 -47486657 + AT_rich Low_complexity Low_complexity 1 21 0 226 293 13 53 chr15 53894662 53894737 -47485784 - L2 LINE L2 0 3272 3201 1584 192 0 24 chr15 53894948 53895239 -47485282 + AluJo SINE Alu 5 288 -24 1611 165 0 54 chr15 53895569 53895885 -47484636 - AluJo SINE Alu -13 299 1 183 184 0 0 chr15 53895980 53896018 -47484503 + A-rich Low_complexity Low_complexity 1 38 0 257 338 46 53 chr15 53896031 53896182 -47484339 - L2 LINE L2 -7 3265 3116 263 271 0 43 chr15 53896772 53896842 -47483679 + L2 LINE L2 3186 3252 -20 1890 176 0 3 chr15 53897649 53897961 -47482560 + AluJb SINE Alu 1 311 -1 1502 168 9 75 chr15 53901617 53901938 -47478583 - AluJo SINE Alu -12 300 1 4793 163 35 28 chr15 53901939 53902931 -47477590 - L1MC1 LINE L1 -155 6178 5186 1382 159 31 0 chr15 53903110 53903368 -47477153 - L1MD3 LINE L1 0 7995 7730 312 256 112 24 chr15 53903401 53903526 -47476995 - L1MC4a LINE L1 -1910 5898 5763 227 292 180 0 chr15 53903700 53903789 -47476732 - MIR SINE MIR -74 188 84 1904 138 10 14 chr15 53903830 53904119 -47476402 + AluSx SINE Alu 1 288 -24 2096 128 3 16 chr15 53904368 53904681 -47475840 + AluSx SINE Alu 1 309 -3 2054 134 20 0 chr15 53904807 53905113 -47475408 + AluSx SINE Alu 1 312 0 25 0 0 0 chr15 53905737 53905762 -47474759 + AT_rich Low_complexity Low_complexity 1 25 0 315 0 0 0 chr15 53905905 53905940 -47474581 + (A)n Simple_repeat Simple_repeat 1 35 0 302 80 20 0 chr15 53907286 53907336 -47473185 + (CA)n Simple_repeat Simple_repeat 1 51 0 2443 68 0 16 chr15 53908673 53908982 -47471539 + AluSx SINE Alu 1 304 -8 234 125 0 0 chr15 53911409 53911449 -47469072 + MADE1 DNA Mariner 41 80 0 23 0 0 0 chr15 53911979 53912002 -47468519 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 53912116 53912138 -47468383 + AT_rich Low_complexity Low_complexity 1 22 0 420 286 7 21 chr15 53915813 53915953 -47464568 + MIR3 SINE MIR 20 157 -51 1670 167 28 0 chr15 53916121 53916403 -47464118 + AluJo SINE Alu 1 290 -22 431 35 18 0 chr15 53916690 53916747 -47463774 + (TG)n Simple_repeat Simple_repeat 2 59 0 1964 131 0 0 chr15 53916752 53917027 -47463494 - AluSx SINE Alu -37 275 1 744 148 0 70 chr15 53917273 53917415 -47463106 - FLAM_C SINE Alu 0 133 2 1385 277 127 5 chr15 53918467 53919150 -47461371 - L2 LINE L2 -1 3312 2538 1857 157 0 26 chr15 53919683 53919989 -47460532 + AluJo SINE Alu 1 298 -14 2056 135 0 7 chr15 53920013 53920317 -47460204 + AluJb SINE Alu 1 302 -10 2195 103 3 7 chr15 53920366 53920667 -47459854 + AluSg1 SINE Alu 1 300 -9 219 380 43 0 chr15 53920670 53920762 -47459759 + L2 LINE L2 3208 3303 -10 2178 103 0 32 chr15 53921002 53921313 -47459208 - AluSq SINE Alu -12 301 1 22 0 0 0 chr15 53921313 53921335 -47459186 + AT_rich Low_complexity Low_complexity 1 22 0 1419 183 0 56 chr15 53921576 53921860 -47458661 - AluJo SINE Alu -15 297 30 357 139 0 0 chr15 53921954 53922016 -47458505 - AluSg SINE Alu -84 216 169 695 87 19 0 chr15 53922016 53922120 -47458401 + AluSg/x SINE Alu 205 310 0 1217 119 0 0 chr15 53922317 53922477 -47458044 - AluSg SINE Alu -150 160 1 1750 159 37 3 chr15 53923371 53923667 -47456854 - AluJb SINE Alu -6 306 1 1595 163 12 66 chr15 53924221 53924540 -47455981 - AluJo SINE Alu -10 302 1 982 188 133 9 chr15 53924693 53924911 -47455610 - AluJo SINE Alu -21 291 47 323 226 145 54 chr15 53925786 53925965 -47454556 - MIR SINE MIR 0 262 64 2279 102 0 0 chr15 53925965 53926260 -47454261 + AluY SINE Alu 3 297 -14 281 292 155 19 chr15 53926499 53926660 -47453861 + MIR SINE MIR 49 231 -31 259 336 111 63 chr15 53927181 53927514 -47453007 + L2 LINE L2 2872 3220 -52 199 302 0 0 chr15 53927751 53927794 -47452727 - MIR SINE MIR -105 103 61 1521 180 20 16 chr15 53928518 53928823 -47451698 + AluJb SINE Alu 1 306 -6 2344 88 3 7 chr15 53931241 53931549 -47448972 + AluSq SINE Alu 1 307 -6 184 226 0 0 chr15 53931550 53931581 -47448940 - L2 LINE L2 -32 3240 3210 184 200 0 0 chr15 53931556 53931586 -47448935 - MIR SINE MIR -32 230 201 1915 143 33 27 chr15 53932248 53932583 -47447938 + MER2 DNA MER2_type 1 337 -8 367 100 0 0 chr15 53932583 53932633 -47447888 - AluJ/FLAM SINE Alu -229 73 24 1667 154 27 27 chr15 53932684 53932977 -47447544 - AluJo SINE Alu -19 293 1 2290 98 0 0 chr15 53933496 53933791 -47446730 + AluSq SINE Alu 1 295 -18 474 248 177 30 chr15 53933822 53934020 -47446501 + MIR SINE MIR 36 262 0 368 253 55 0 chr15 53934321 53934412 -47446109 + MIR SINE MIR 89 184 -78 465 274 44 0 chr15 53935289 53935424 -47445097 + L1MB5 LINE L1 6001 6141 -33 21 82 0 0 chr15 53935877 53935926 -47444595 + AT_rich Low_complexity Low_complexity 1 49 0 819 132 0 0 chr15 53936011 53936125 -47444396 + AluSq/x SINE Alu 1 114 -198 1300 128 8 34 chr15 54036125 54036250 -47344271 - MLT1B LTR MaLR -161 229 111 2736 109 65 49 chr15 54036250 54036709 -47343812 + MER75 DNA T2_type 1 470 -44 2022 157 0 7 chr15 54036709 54037008 -47343513 + AluSx SINE Alu 1 297 -15 2736 109 65 49 chr15 54037008 54037054 -47343467 + MER75 DNA T2_type 470 514 0 1300 128 8 34 chr15 54037054 54037163 -47343358 - MLT1B LTR MaLR -279 111 1 1868 142 3 31 chr15 54037571 54037896 -47342625 + AluJb SINE Alu 1 317 0 393 291 127 6 chr15 54038646 54038804 -47341717 + MIR SINE MIR 28 204 -58 198 0 0 0 chr15 54039248 54039270 -47341251 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 2341 134 45 38 chr15 54039326 54039389 -47341132 - MSTA LTR MaLR -6 422 361 2342 112 3 0 chr15 54039389 54039694 -47340827 - AluSp SINE Alu -7 306 1 2341 134 45 38 chr15 54039694 54040049 -47340472 - MSTA LTR MaLR -67 361 1 2360 116 3 0 chr15 54040561 54040872 -47339649 + AluSx SINE Alu 1 312 0 283 256 128 0 chr15 54042253 54042331 -47338190 - MIR SINE MIR -61 147 60 230 240 83 31 chr15 54042420 54042516 -47338005 + MER5B DNA MER1_type 74 174 -4 2185 134 0 3 chr15 54042837 54043142 -47337379 + AluSx SINE Alu 1 304 -8 599 167 15 30 chr15 54044241 54044373 -47336148 + MSTC LTR MaLR 299 428 0 328 273 123 26 chr15 54045645 54045799 -47334722 + MIR SINE MIR 79 247 -15 192 69 0 0 chr15 54046023 54046052 -47334469 - L2 LINE L2 -220 3052 3024 2386 84 0 0 chr15 54046143 54046430 -47334091 + AluSg SINE Alu 10 296 -14 722 206 126 60 chr15 54046565 54046914 -47333607 + L1MC5 LINE L1 7560 7931 -30 236 236 36 0 chr15 54046914 54046969 -47333552 + GA-rich Low_complexity Low_complexity 4 60 0 348 310 10 1 chr15 54048328 54048446 -47332075 + MIR SINE MIR 36 152 -65 2433 64 0 0 chr15 54048459 54048741 -47331780 - AluSg SINE Alu -12 298 17 392 267 78 63 chr15 54049073 54049279 -47331242 + L1MC5 LINE L1 7721 7929 -32 1821 152 0 41 chr15 54049282 54049598 -47330923 + AluSx SINE Alu 1 303 -9 463 153 71 0 chr15 54050215 54050300 -47330221 - MLT1H1 LTR MaLR -60 495 405 1699 150 3 39 chr15 54050492 54050799 -47329722 + MER2 DNA MER2_type 1 296 -49 2057 160 59 26 chr15 54052226 54052430 -47328091 - L1MD3 LINE L1 -122 7873 7677 2246 119 7 0 chr15 54052430 54052732 -47327789 - AluSx SINE Alu -8 304 1 2057 160 59 26 chr15 54052732 54052984 -47327537 - L1MD3 LINE L1 -318 7677 7402 374 214 24 0 chr15 54052986 54053070 -47327451 - MLT1F1 LTR MaLR -446 121 36 269 191 0 0 chr15 54053072 54053119 -47327402 - L1MD3 LINE L1 -880 7115 7069 273 336 60 0 chr15 54053123 54053239 -47327282 + MIR SINE MIR 97 219 -43 208 274 0 0 chr15 54053608 54053659 -47326862 + L2 LINE L2 3258 3308 -5 2169 112 3 34 chr15 54053728 54054050 -47326471 - AluSx SINE Alu 0 312 1 332 148 0 0 chr15 54054085 54054139 -47326382 + MIR SINE MIR 76 129 -79 890 222 63 13 chr15 54055532 54055771 -47324750 - ORSL DNA AcHobo -24 251 1 1698 189 49 14 chr15 54056474 54056761 -47323760 - MLT1B LTR MaLR -4 386 82 2375 96 0 6 chr15 54056761 54057075 -47323446 - AluSx SINE Alu 0 312 1 1698 189 49 14 chr15 54057075 54057157 -47323364 - MLT1B LTR MaLR -308 82 4 476 75 0 0 chr15 54057538 54057605 -47322916 - Alu SINE Alu -9 303 237 3717 124 47 17 chr15 54057707 54058342 -47322179 - L1MC1 LINE L1 -393 5940 5287 1433 149 5 9 chr15 54058342 54058563 -47321958 - AluJo SINE Alu -14 298 79 1403 187 13 27 chr15 54058585 54058884 -47321637 + L1MC1 LINE L1 6037 6331 -2 255 109 0 0 chr15 54059645 54059691 -47320830 - L1MC1 LINE L1 0 6333 6288 198 333 56 0 chr15 54059833 54059905 -47320616 - MIR SINE MIR -76 186 111 1857 192 6 22 chr15 54060319 54060525 -47319996 + MLT1A1 LTR MaLR 1 200 -165 1922 137 17 17 chr15 54060525 54060662 -47319859 + AluJo SINE Alu 1 137 -175 2130 144 0 0 chr15 54060662 54060954 -47319567 + AluSx SINE Alu 1 292 -20 1922 137 17 17 chr15 54060954 54061135 -47319386 + AluJo SINE Alu 136 312 0 1857 192 6 22 chr15 54061135 54061292 -47319229 + MLT1A1 LTR MaLR 200 358 -7 272 104 60 15 chr15 54061332 54061399 -47319122 + GA-rich Low_complexity Low_complexity 2 71 0 586 219 0 12 chr15 54062693 54062857 -47317664 + (CA)n Simple_repeat Simple_repeat 1 162 0 213 184 20 41 chr15 54063033 54063082 -47317439 + GA-rich Low_complexity Low_complexity 4 51 0 2030 168 0 19 chr15 54063691 54064007 -47316514 + AluJb SINE Alu 1 310 -2 374 218 91 36 chr15 54064502 54064612 -47315909 + MIR3 SINE MIR 72 187 -21 275 290 43 0 chr15 54065326 54065419 -47315102 - L2 LINE L2 -557 2757 2661 193 384 110 0 chr15 54065519 54065782 -47314739 - L2 LINE L2 -650 2664 2373 225 193 26 44 chr15 54066447 54066561 -47313960 + GA-rich Low_complexity Low_complexity 1 112 0 366 241 0 97 chr15 54066678 54066873 -47313648 + C-rich Low_complexity Low_complexity 3 178 0 245 231 10 118 chr15 54066898 54067093 -47313428 + C-rich Low_complexity Low_complexity 2 175 0 * 370 221 0 47 chr15 54066965 54067114 -47313407 + CT-rich Low_complexity Low_complexity 3 144 0 336 306 11 71 chr15 54067369 54067547 -47312974 - L1MC4a LINE L1 -1821 5987 5820 1877 175 3 3 chr15 54067547 54067850 -47312671 - AluJb SINE Alu -9 303 1 1135 185 106 83 chr15 54068241 54068674 -47311847 - LTR7 LTR ERV1 -7 443 1 2317 100 3 3 chr15 54069217 54069527 -47310994 + AluSg SINE Alu 1 310 0 190 278 37 0 chr15 54071152 54071206 -47309315 + MIR SINE MIR 109 164 -98 245 264 69 11 chr15 54071723 54071810 -47308711 + MIR SINE MIR 107 198 -64 2133 144 0 0 chr15 54071814 54072119 -47308402 + AluSx SINE Alu 1 305 -7 464 198 0 23 chr15 54075150 54075236 -47305285 - L2 LINE L2 0 3272 3189 2393 101 0 10 chr15 54075641 54075949 -47304572 - AluSx SINE Alu -7 305 1 911 197 46 17 chr15 54076069 54076220 -47304301 + MER33 DNA MER1_type 2 164 -2421 2077 145 0 14 chr15 54076220 54076586 -47303935 - MER46B DNA MER2_type 0 236 1 911 197 46 17 chr15 54076586 54076673 -47303848 + MER33 DNA MER1_type 164 247 -77 273 273 211 40 chr15 54077229 54077504 -47303017 - L2 LINE L2 -6 3307 2986 394 293 68 31 chr15 54077644 54077835 -47302686 + MIR SINE MIR 65 262 0 2230 95 17 3 chr15 54078601 54078897 -47301624 + AluSx SINE Alu 1 300 -12 2268 99 0 3 chr15 54080252 54080566 -47299955 + AluSq SINE Alu 1 313 0 857 191 60 0 chr15 54081444 54081612 -47298909 + MER5B DNA MER1_type 1 178 0 28 79 0 0 chr15 54082428 54082491 -47298030 + GC_rich Low_complexity Low_complexity 1 63 0 220 158 26 0 chr15 54082889 54082927 -47297594 - L2 LINE L2 -13 3300 3262 231 304 43 0 chr15 54082984 54083053 -47297468 - MIR SINE MIR -92 116 45 289 289 36 12 chr15 54083094 54083177 -47297344 + MIR3 SINE MIR 70 154 -54 2213 88 13 0 chr15 54083223 54083528 -47296993 - AluSq SINE Alu -4 309 1 536 115 13 0 chr15 54083625 54083703 -47296818 + MADE1 DNA Mariner 2 80 0 1543 153 12 74 chr15 54084193 54084343 -47296178 + AluJb SINE Alu 3 124 -188 537 16 0 0 chr15 54084343 54084405 -47296116 + (CA)n Simple_repeat Simple_repeat 1 62 0 1543 153 12 74 chr15 54084405 54084580 -47295941 + AluJb SINE Alu 124 308 -4 496 213 6 33 chr15 54084586 54084769 -47295752 + GA-rich Low_complexity Low_complexity 3 180 0 * 662 102 0 82 chr15 54084750 54084946 -47295575 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 2184 118 0 6 chr15 54086001 54086315 -47294206 + AluSx SINE Alu 1 312 0 372 303 71 24 chr15 54086545 54086799 -47293722 - LTR16C LTR ERVL 0 491 226 491 285 124 57 chr15 54086958 54087312 -47293209 + LTR41 LTR ERVL 231 608 -165 348 299 203 32 chr15 54087618 54087869 -47292652 + L2 LINE L2 2977 3270 -2 2043 86 7 0 chr15 54088113 54088416 -47292105 + AluSq SINE Alu 5 309 0 2115 86 7 0 chr15 54088431 54088761 -47291760 + AluSx SINE Alu 1 332 0 1866 162 0 16 chr15 54089481 54089796 -47290725 + AluJb SINE Alu 1 310 -2 2267 102 0 0 chr15 54089991 54090294 -47290227 + AluSx SINE Alu 1 303 -9 1212 177 4 17 chr15 54090642 54090879 -47289642 + AluJb SINE Alu 78 311 -1 217 214 71 0 chr15 54090881 54090937 -47289584 - MIR SINE MIR -82 180 121 1567 162 3 69 chr15 54091716 54092050 -47288471 + AluJo SINE Alu 1 312 0 2236 88 3 3 chr15 54092309 54092614 -47287907 - AluSx SINE Alu -5 307 3 2106 128 3 3 chr15 54092616 54092928 -47287593 - AluSx SINE Alu 0 312 1 376 164 14 41 chr15 54092948 54093021 -47287500 + ORSL DNA AcHobo 2 72 -203 813 167 0 21 chr15 54093026 54093170 -47287351 - FLAM_C SINE Alu -1 142 2 905 159 53 11 chr15 54093176 54093365 -47287156 + ORSL DNA AcHobo 79 275 0 500 219 51 118 chr15 54093375 54093430 -47287091 + MER5B DNA MER1_type 3 60 -118 2562 36 3 0 chr15 54093430 54093736 -47286785 + AluY SINE Alu 1 307 -4 500 219 51 118 chr15 54093736 54093858 -47286663 + MER5B DNA MER1_type 60 168 -10 184 217 29 58 chr15 54094142 54094211 -47286310 - L2 LINE L2 -629 2685 2619 1527 167 31 21 chr15 54094882 54095170 -47285351 + AluJo SINE Alu 5 295 -17 701 147 0 96 chr15 54095310 54095446 -47285075 - FLAM_C SINE Alu -19 124 2 741 221 194 5 chr15 54095805 54096022 -47284499 + L1MA5A LINE L1 5954 6211 -86 405 163 35 12 chr15 54096116 54096202 -47284319 + L1MA5 LINE L1 6213 6300 0 345 231 56 44 chr15 54096883 54097043 -47283478 + L1ME4a LINE L1 5944 6105 -16 2102 117 0 0 chr15 54097089 54097389 -47283132 + AluSg SINE Alu 2 301 -9 184 188 0 0 chr15 54098045 54098077 -47282444 + L2 LINE L2 3014 3045 -227 342 366 69 37 chr15 54098109 54098325 -47282196 + L2 LINE L2 3034 3256 -16 897 206 129 101 chr15 54098389 54098596 -47281925 + L1ME2 LINE L1 5441 5641 -521 1983 130 16 0 chr15 54098596 54098903 -47281618 + AluSx SINE Alu 1 312 0 897 206 129 101 chr15 54098903 54099264 -47281257 + L1ME2 LINE L1 5641 6031 -131 21 57 0 0 chr15 54099276 54099311 -47281210 + AT_rich Low_complexity Low_complexity 1 35 0 691 269 25 35 chr15 54099311 54099512 -47281009 + MIR SINE MIR 48 246 -16 2095 126 3 0 chr15 54100037 54100339 -47280182 - AluSx SINE Alu -9 303 1 377 177 127 0 chr15 54100424 54100503 -47280018 + 5S rRNA rRNA 2 90 -31 2233 71 3 14 chr15 54101132 54101427 -47279094 - AluSg SINE Alu -18 292 1 7485 155 83 32 chr15 54101446 54102950 -47277571 - L1MC3 LINE L1 -2 7783 6203 1801 174 20 64 chr15 54103134 54103525 -47276996 + MLT1A2 LTR MaLR 1 374 0 233 297 0 0 chr15 54104364 54104438 -47276083 + T-rich Low_complexity Low_complexity 1 74 0 551 310 65 31 chr15 54105682 54106005 -47274516 + L2 LINE L2 1810 2143 -1171 334 273 0 11 chr15 54106032 54106120 -47274401 - MER5A DNA MER1_type -86 103 17 225 270 20 40 chr15 54106107 54106207 -47274314 + L2 LINE L2 2118 2215 -1099 * 549 346 135 18 chr15 54106208 54106717 -47273804 + L2 LINE L2 2733 3301 -12 1068 158 0 5 chr15 54107400 54107590 -47272931 + AluJo SINE Alu 122 310 -2 2093 123 7 3 chr15 54107658 54107959 -47272562 + AluSx SINE Alu 1 302 -10 34 0 0 0 chr15 54108122 54108156 -47272365 + AT_rich Low_complexity Low_complexity 1 34 0 255 325 117 40 chr15 54108527 54109004 -47271517 - L2 LINE L2 -350 2964 2451 373 340 196 0 chr15 54109493 54109702 -47270819 + MIR SINE MIR 7 256 -6 2107 119 3 3 chr15 54110778 54111088 -47269433 - AluSx SINE Alu -2 310 1 762 303 26 46 chr15 54111865 54112172 -47268349 - L3 LINE CR1 -63 1514 1214 2161 91 10 3 chr15 54112205 54112502 -47268019 - AluSg SINE Alu -11 299 1 474 204 0 0 chr15 54112528 54112631 -47267890 + CT-rich Low_complexity Low_complexity 2 104 0 1421 147 7 50 chr15 54112631 54112930 -47267591 - AluJo SINE Alu -26 286 1 254 25 0 50 chr15 54114006 54114046 -47266475 + (CAA)n Simple_repeat Simple_repeat 2 39 0 264 330 36 9 chr15 54114128 54114240 -47266281 - L3 LINE CR1 -749 828 714 258 307 11 23 chr15 54114247 54114335 -47266186 + MIR SINE MIR 12 98 -164 1671 185 80 25 chr15 54114536 54114898 -47265623 + MLT1D LTR MaLR 3 384 -121 255 267 15 107 chr15 54114988 54115119 -47265402 + L2 LINE L2 3145 3263 -9 341 297 63 9 chr15 54115145 54115256 -47265265 - L3 LINE CR1 -1127 450 334 312 239 44 71 chr15 54115530 54115643 -47264878 - L1MCa LINE L1 -6312 114 5 180 191 21 43 chr15 54115655 54115702 -47264819 - MIR SINE MIR -152 110 65 717 257 131 5 chr15 54116292 54116514 -47264007 + MIR SINE MIR 13 262 0 1945 134 37 0 chr15 54116586 54116885 -47263636 - AluSx SINE Alu -2 310 1 279 287 156 16 chr15 54117022 54117144 -47263377 - L2 LINE L2 0 3272 3134 888 175 17 79 chr15 54117869 54118109 -47262412 - AluJb SINE Alu -86 226 2 626 267 124 73 chr15 54119003 54119541 -47260980 + L2 LINE L2 2728 3312 -1 957 50 44 12 chr15 54119617 54119777 -47260744 + (GAAA)n Simple_repeat Simple_repeat 4 168 0 588 163 51 0 chr15 54120338 54120436 -47260085 + U6 snRNA snRNA 3 105 -2 489 243 64 69 chr15 54120481 54120654 -47259867 - MIR SINE MIR -75 187 16 228 235 12 86 chr15 54122786 54122867 -47257654 - L2 LINE L2 -14 3299 3225 1179 221 108 84 chr15 54122875 54123039 -47257482 - MLT1J LTR MaLR -1 510 351 2664 129 44 5 chr15 54123039 54123449 -47257072 - MSTB LTR MaLR 0 426 1 1179 221 108 84 chr15 54123449 54123782 -47256739 - MLT1J LTR MaLR -160 351 1 345 310 35 18 chr15 54124027 54124140 -47256381 - MER5A DNA MER1_type -12 177 63 408 305 61 42 chr15 54124274 54124487 -47256034 + L1ME3A LINE L1 5735 5951 -219 2148 127 0 0 chr15 54124600 54124908 -47255613 - AluSx SINE Alu -1 311 4 2082 112 0 10 chr15 54126335 54126640 -47253881 - AluY SINE Alu -1 310 9 1615 148 7 54 chr15 54126646 54126989 -47253532 - AluJb SINE Alu 0 329 1 359 276 159 7 chr15 54127407 54127552 -47252969 - MIR SINE MIR -84 178 12 197 208 21 0 chr15 54127809 54127857 -47252664 + L2 LINE L2 3264 3312 -1 1402 143 98 4 chr15 54128302 54128547 -47251974 + AluSx SINE Alu 1 268 -44 191 204 136 0 chr15 54128691 54128735 -47251786 + MIR SINE MIR 123 172 -90 995 200 27 32 chr15 54128760 54128980 -47251541 + MER20 DNA MER1_type 1 219 0 565 272 6 25 chr15 54129594 54129752 -47250769 + MIR SINE MIR 2 156 -106 1696 194 13 35 chr15 54129962 54130339 -47250182 - L1MB4 LINE L1 0 6180 5812 22 35 0 0 chr15 54132077 54132106 -47248415 + AT_rich Low_complexity Low_complexity 1 29 0 312 123 0 0 chr15 54132303 54132360 -47248161 + AluSp/q SINE Alu 244 300 -3 2227 121 0 3 chr15 54132861 54133166 -47247355 - AluSx SINE Alu -8 304 1 443 291 26 101 chr15 54133212 54133590 -47246931 - MLT1H LTR MaLR -161 388 39 277 342 81 2 chr15 54134065 54134232 -47246289 - MIR3 SINE MIR -54 154 5 256 253 11 58 chr15 54134525 54134612 -47245909 + L1ME4a LINE L1 5502 5584 -537 456 257 128 80 chr15 54134691 54134940 -47245581 - MLT1L LTR MaLR -47 568 308 229 205 68 77 chr15 54135142 54135259 -47245262 + L1ME4a LINE L1 6004 6119 -2 224 184 0 0 chr15 54136943 54136981 -47243540 - MIR SINE MIR -33 229 192 1002 186 27 5 chr15 54136981 54137147 -47243374 - AluJb SINE Alu -10 302 130 2158 68 28 86 chr15 54137147 54137472 -47243049 - AluSp SINE Alu -7 306 1 1002 186 27 5 chr15 54137472 54137493 -47243028 - AluJb SINE Alu -182 130 111 355 274 47 9 chr15 54137494 54137600 -47242921 - MIR SINE MIR -111 151 42 2316 110 0 0 chr15 54139343 54139652 -47240869 + AluSc SINE Alu 1 309 0 424 305 25 40 chr15 54139932 54140132 -47240389 + MER117 DNA MER1_type 1 197 0 211 321 0 0 chr15 54140173 54140229 -47240292 - L2 LINE L2 0 3272 3217 1768 145 7 10 chr15 54140420 54140709 -47239812 - AluJo SINE Alu -24 288 1 2062 125 0 7 chr15 54141328 54141623 -47238898 - AluSx SINE Alu -19 293 1 1684 94 22 0 chr15 54142225 54142448 -47238073 - MER30 DNA MER1_type 0 230 3 227 319 77 11 chr15 54143947 54144038 -47236483 + HAL1 LINE L1 40 136 -2371 329 266 102 50 chr15 54144266 54145862 -47234659 + HAL1 LINE L1 420 2164 -343 189 0 0 0 chr15 54146011 54146032 -47234489 + (T)n Simple_repeat Simple_repeat 1 21 0 26 0 0 0 chr15 54146103 54146129 -47234392 + AT_rich Low_complexity Low_complexity 1 26 0 311 332 59 59 chr15 54146345 54146734 -47233787 + L1M4 LINE L1 2569 2957 -3189 579 319 32 19 chr15 54146734 54146950 -47233571 + MLT1J LTR MaLR 1 219 -292 425 299 41 21 chr15 54147215 54147409 -47233112 + L1M4 LINE L1 3038 3235 -2911 270 0 0 0 chr15 54148223 54148253 -47232268 + (A)n Simple_repeat Simple_repeat 1 30 0 519 220 130 6 chr15 54150732 54150886 -47229635 - MIR SINE MIR -29 233 62 201 317 61 12 chr15 54151571 54151653 -47228868 + MIR SINE MIR 47 132 -76 2112 144 0 0 chr15 54151973 54152272 -47228249 - AluSx SINE Alu -13 299 1 207 0 0 0 chr15 54152786 54152809 -47227712 + (A)n Simple_repeat Simple_repeat 1 23 0 1823 161 14 0 chr15 54153239 54153524 -47226997 - AluJb SINE Alu -23 289 1 1749 241 72 30 chr15 54154550 54155093 -47225428 - L1ME3 LINE L1 0 6162 5597 1728 163 10 7 chr15 54155590 54155885 -47224636 + AluJo SINE Alu 6 301 -11 1503 273 60 53 chr15 54156807 54157473 -47223048 - L1ME3 LINE L1 0 6231 5561 996 268 77 11 chr15 54157474 54157851 -47222670 - L1ME3 LINE L1 -1328 4887 4486 239 300 10 10 chr15 54157849 54157949 -47222572 - L1ME3 LINE L1 -4601 1795 1696 * 706 311 74 13 chr15 54158019 54158411 -47222110 - L1ME3 LINE L1 -4810 1586 1161 377 39 20 0 chr15 54158411 54158462 -47222059 + (TG)n Simple_repeat Simple_repeat 2 53 0 706 311 74 13 chr15 54158462 54158526 -47221995 - L1ME3 LINE L1 -5235 1161 1102 1458 167 4 17 chr15 54158630 54158870 -47221651 + AluJo SINE Alu 1 237 -75 451 274 78 87 chr15 54158870 54158972 -47221549 - L1ME3 LINE L1 -5168 1037 936 2145 139 3 0 chr15 54158972 54159274 -47221247 + AluSx SINE Alu 1 303 -9 451 274 78 87 chr15 54159274 54160000 -47220521 - L1ME3 LINE L1 -5269 936 270 4796 180 24 28 chr15 54160000 54160890 -47219631 - L1MC1 LINE L1 -6 6327 5440 2075 127 3 0 chr15 54160890 54161181 -47219340 - AluSx SINE Alu -20 292 1 4796 180 24 28 chr15 54161181 54161217 -47219304 - L1MC1 LINE L1 -893 5440 5405 451 274 78 87 chr15 54161217 54161451 -47219070 - L1ME3 LINE L1 -5935 270 35 224 320 78 29 chr15 54161451 54161554 -47218967 - L2 LINE L2 -12 3260 3153 308 270 0 56 chr15 54161902 54161991 -47218530 - L2 LINE L2 -182 3090 3007 201 245 0 57 chr15 54162167 54162220 -47218301 + MIR3 SINE MIR 8 57 -151 764 272 73 0 chr15 54163698 54163904 -47216617 - MER58A DNA MER1_type 0 224 4 356 282 166 25 chr15 54165606 54165883 -47214638 - L1ME4a LINE L1 -173 5948 5633 385 81 81 0 chr15 54167033 54167095 -47213426 + MER41A LTR ERV1 400 466 -88 22 56 0 0 chr15 54167095 54167131 -47213390 + AT_rich Low_complexity Low_complexity 1 36 0 2065 152 39 39 chr15 54168108 54168469 -47212052 - THE1B LTR MaLR 0 364 4 254 311 87 50 chr15 54168555 54168716 -47211805 + MIR SINE MIR 10 176 -86 443 344 148 30 chr15 54170193 54171004 -47209517 - L2 LINE L2 -645 2669 1763 2290 136 47 8 chr15 54171067 54171428 -47209093 - THE1C LTR MaLR 0 375 1 221 323 40 24 chr15 54174197 54174321 -47206200 + L2 LINE L2 2662 2787 -527 798 185 11 121 chr15 54174699 54174964 -47205557 - MER102b DNA MER1_type -2 339 104 21 36 0 0 chr15 54174981 54175009 -47205512 + AT_rich Low_complexity Low_complexity 1 28 0 623 56 0 22 chr15 54175272 54175361 -47205160 + (TTTCC)n Simple_repeat Simple_repeat 4 90 0 2079 132 0 7 chr15 54175362 54175658 -47204863 - AluSx SINE Alu -18 294 1 21 0 0 0 chr15 54175871 54175892 -47204629 + AT_rich Low_complexity Low_complexity 1 21 0 1990 124 0 0 chr15 54175990 54176257 -47204264 - AluSx SINE Alu -5 307 41 210 300 276 33 chr15 54177077 54177287 -47203234 + L2 LINE L2 3012 3272 0 247 309 101 118 chr15 54177691 54178057 -47202464 - L2 LINE L2 -13 3259 2900 1020 210 81 66 chr15 54178090 54178293 -47202228 + L1MC5 LINE L1 7498 7697 -264 2174 132 0 0 chr15 54178293 54178596 -47201925 - AluSq SINE Alu -10 303 1 1020 210 81 66 chr15 54178596 54178801 -47201720 + L1MC5 LINE L1 7697 7912 -49 1909 159 30 0 chr15 54178807 54179136 -47201385 - AluSx SINE Alu 0 339 2 294 29 0 0 chr15 54179162 54179197 -47201324 + (TG)n Simple_repeat Simple_repeat 2 36 0 2334 125 22 33 chr15 54179310 54179678 -47200843 + THE1B LTR MaLR 1 364 0 246 105 0 0 chr15 54180846 54180884 -47199637 + (T)n Simple_repeat Simple_repeat 1 38 0 257 340 75 34 chr15 54181250 54181397 -47199124 - L2 LINE L2 -4 3268 3116 218 333 0 0 chr15 54182440 54182518 -47198003 - L2 LINE L2 -2 3270 3193 589 209 16 8 chr15 54182571 54182700 -47197821 + FLAM_A SINE Alu 2 131 -2 218 291 88 51 chr15 54182744 54183034 -47197487 - L2 LINE L2 -214 3058 2758 2295 205 45 66 chr15 54184090 54184509 -47196012 + MLT1F LTR MaLR 22 429 -113 2357 109 0 3 chr15 54184509 54184822 -47195699 - AluSx SINE Alu 0 312 1 2295 205 45 66 chr15 54184822 54184934 -47195587 + MLT1F LTR MaLR 429 542 0 280 191 32 0 chr15 54186016 54186079 -47194442 + MER20 DNA MER1_type 151 215 -4 401 0 20 0 chr15 54186099 54186148 -47194373 + (TG)n Simple_repeat Simple_repeat 2 51 0 198 160 60 20 chr15 54187065 54187115 -47193406 - L2 LINE L2 0 3313 3262 1736 170 14 0 chr15 54189262 54189550 -47190971 - AluJb SINE Alu -20 292 1 2189 138 0 0 chr15 54189993 54190298 -47190223 + AluSx SINE Alu 1 305 -7 2126 129 0 7 chr15 54190861 54191155 -47189366 + AluSx SINE Alu 15 306 -6 198 0 0 0 chr15 54191676 54191698 -47188823 + (T)n Simple_repeat Simple_repeat 1 22 0 2812 172 51 12 chr15 54191724 54192311 -47188210 - L1MD1 LINE L1 0 6242 5633 7598 207 72 54 chr15 54192351 54192830 -47187691 - L1MC/D LINE L1 -564 5678 5209 261 0 0 0 chr15 54192830 54192859 -47187662 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7598 207 72 54 chr15 54192859 54193383 -47187138 - L1MC/D LINE L1 -1033 5209 4696 2262 124 0 6 chr15 54193383 54193698 -47186823 - AluSq SINE Alu 0 313 1 7598 207 72 54 chr15 54193698 54195162 -47185359 - L1MC/D LINE L1 -1546 4696 3132 2770 51 23 3 chr15 54195162 54195512 -47185009 - L1PA8 LINE L1 0 6172 5816 7598 207 72 54 chr15 54195512 54195981 -47184540 - L1MC/D LINE L1 -3110 3132 2673 2272 182 55 0 chr15 54198497 54199109 -47181412 - L1M4 LINE L1 -494 5690 5040 24 0 0 0 chr15 54200010 54200034 -47180487 + AT_rich Low_complexity Low_complexity 1 24 0 936 199 11 0 chr15 54200111 54200310 -47180211 - L1M4 LINE L1 -1078 5068 4868 228 330 119 0 chr15 54200789 54200907 -47179614 + MIR3 SINE MIR 66 197 -11 3738 177 82 58 chr15 54200977 54201898 -47178623 + L1MC3 LINE L1 6824 7767 -18 265 189 0 0 chr15 54202293 54202346 -47178175 + L1MC3 LINE L1 7047 7099 -686 1012 123 11 48 chr15 54202486 54202673 -47177848 + L1MC3 LINE L1 7412 7591 -194 681 261 58 13 chr15 54203961 54204187 -47176334 + L3 LINE CR1 585 820 -757 376 183 0 0 chr15 54206943 54207003 -47173518 + MER1B DNA MER1_type 2 61 -276 * 1239 112 0 78 chr15 54207000 54207205 -47173316 + MER1B DNA MER1_type 151 339 0 396 289 118 20 chr15 54207290 54207494 -47173027 + MIR SINE MIR 4 227 -35 954 134 0 9 chr15 54208861 54209121 -47171400 - AluJb SINE Alu -9 303 1 247 65 43 0 chr15 54209125 54209171 -47171350 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 417 276 81 69 chr15 54209386 54209806 -47170715 - L2 LINE L2 -337 2977 2553 316 203 34 102 chr15 54209818 54209855 -47170666 + MER103 DNA DNA 13 51 -115 2144 120 27 0 chr15 54209855 54210154 -47170367 - AluSx SINE Alu -5 307 1 316 203 34 102 chr15 54210154 54210234 -47170287 + MER103 DNA DNA 51 122 -44 393 203 0 0 chr15 54211045 54211119 -47169402 + MIR3 SINE MIR 82 155 -53 568 266 18 48 chr15 54211817 54212046 -47168475 + MIR SINE MIR 28 249 -13 394 313 128 19 chr15 54212755 54213020 -47167501 + L3 LINE CR1 1190 1483 -94 303 224 75 45 chr15 54213451 54213585 -47166936 - MIR3 SINE MIR -65 143 6 2681 85 6 6 chr15 54214224 54214577 -47165944 - THE1A LTR MaLR -2 353 1 195 42 0 0 chr15 54214734 54214758 -47165763 + (ATG)n Simple_repeat Simple_repeat 3 26 0 495 336 15 39 chr15 54214779 54215019 -47165502 - MIR SINE MIR -14 248 11 1324 230 100 24 chr15 54215129 54215498 -47165023 - MLT1I LTR MaLR -12 397 1 203 206 29 73 chr15 54217373 54217441 -47163080 - MIR SINE MIR -12 250 186 1206 163 58 23 chr15 54217538 54217796 -47162725 - L1MB7 LINE L1 -16 6168 5902 321 357 6 23 chr15 54218470 54218641 -47161880 - MIR3 SINE MIR -2 206 39 562 201 215 0 chr15 54219374 54219518 -47161003 + MER5A DNA MER1_type 9 183 -6 275 293 85 30 chr15 54220860 54221024 -47159497 - MIR SINE MIR -70 192 20 974 259 108 16 chr15 54221932 54222302 -47158219 - L1MC4a LINE L1 -1980 5828 5425 4325 159 70 36 chr15 54223573 54223871 -47156650 - L1MB7 LINE L1 0 6184 5898 426 20 0 0 chr15 54223871 54223922 -47156599 + (TG)n Simple_repeat Simple_repeat 1 51 0 4325 159 70 36 chr15 54223922 54224142 -47156379 - L1MB7 LINE L1 -286 5898 5687 2357 94 0 3 chr15 54224142 54224441 -47156080 - AluSq SINE Alu -15 298 1 4325 159 70 36 chr15 54224441 54224771 -47155750 - L1MB7 LINE L1 -497 5687 5370 1990 157 3 0 chr15 54224771 54225070 -47155451 - AluSx SINE Alu -12 300 1 4325 159 70 36 chr15 54225070 54225629 -47154892 - L1MB7 LINE L1 -814 5370 4745 2587 64 0 3 chr15 54226496 54226808 -47153713 + AluY SINE Alu 1 311 0 493 276 125 5 chr15 54226863 54227044 -47153477 + MIR SINE MIR 16 223 -39 1156 198 0 35 chr15 54227044 54227276 -47153245 - MER58A DNA MER1_type 0 224 1 1325 226 75 47 chr15 54228123 54228508 -47152013 - MSTD LTR MaLR 0 396 1 21 0 0 0 chr15 54228612 54228633 -47151888 + AT_rich Low_complexity Low_complexity 1 21 0 824 140 0 44 chr15 54228638 54228774 -47151747 + FLAM_A SINE Alu 1 130 -3 880 157 131 30 chr15 54229273 54229471 -47151050 + MER20 DNA MER1_type 1 218 -1 318 263 30 40 chr15 54231887 54231986 -47148535 - MER5B DNA MER1_type 0 178 81 386 251 55 55 chr15 54234845 54235008 -47145513 - MIR SINE MIR -76 186 24 302 285 145 36 chr15 54236017 54236210 -47144311 + MIR SINE MIR 43 256 -6 267 206 159 0 chr15 54236672 54236753 -47143768 - MIR3 SINE MIR -10 198 100 401 294 0 0 chr15 54237574 54237676 -47142845 - MIR SINE MIR -55 207 106 335 267 92 62 chr15 54238545 54238598 -47141923 + MER112 DNA MER1_type 2 52 -208 1989 139 7 0 chr15 54238598 54238900 -47141621 + AluSx SINE Alu 1 304 -8 335 267 92 62 chr15 54238900 54239086 -47141435 + MER112 DNA MER1_type 52 248 -12 309 183 33 0 chr15 54239086 54239146 -47141375 - MIR SINE MIR -59 149 88 318 282 38 46 chr15 54239608 54239739 -47140782 - MIR3 SINE MIR -3 205 76 450 0 0 0 chr15 54240181 54240231 -47140290 + (CA)n Simple_repeat Simple_repeat 2 51 0 318 268 134 38 chr15 54244543 54244700 -47135821 + MIR3 SINE MIR 20 191 -17 509 260 81 23 chr15 54245660 54245833 -47134688 - MIR3 SINE MIR -11 197 15 184 324 60 108 chr15 54245840 54246303 -47134218 - L2 LINE L2 -14 3258 2818 2846 94 3 0 chr15 54246592 54246955 -47133566 - THE1B LTR MaLR 0 364 1 209 300 11 67 chr15 54247403 54247493 -47133028 - MIR SINE MIR -97 111 27 246 229 16 0 chr15 54250519 54250580 -47129941 + MIR SINE MIR 138 199 -63 2518 114 22 6 chr15 54250835 54251193 -47129328 - THE1B LTR MaLR 0 364 1 205 262 98 82 chr15 54253331 54253393 -47127128 + MIR SINE MIR 38 98 -159 428 233 78 0 chr15 54253393 54253496 -47127025 - MER81 DNA DNA -2 112 2 205 262 98 82 chr15 54253496 54253572 -47126949 + MIR SINE MIR 98 181 -76 2093 153 35 72 chr15 54253606 54254091 -47126430 - MLT1C LTR MaLR 0 467 1 338 332 14 2 chr15 54255358 54255488 -47125033 - MIR SINE MIR -65 143 27 242 294 59 39 chr15 54255609 54255711 -47124810 + L3 LINE CR1 1452 1555 -22 239 284 11 32 chr15 54255960 54256055 -47124466 + MIR SINE MIR 40 132 -76 686 151 221 23 chr15 54257586 54257758 -47122763 - MER96B DNA MER1_type? -41 376 171 2154 103 7 3 chr15 54258631 54258931 -47121590 - AluSq SINE Alu -12 301 1 614 271 13 7 chr15 54260224 54260375 -47120146 - L2 LINE L2 0 3313 3162 275 309 149 17 chr15 54260815 54260996 -47119525 + MIR3 SINE MIR 3 207 -1 248 183 146 24 chr15 54261817 54261899 -47118622 + LTR33 LTR ERVL 54 145 -376 215 368 11 0 chr15 54263080 54263175 -47117346 - MIR SINE MIR -128 134 39 596 291 108 4 chr15 54263416 54263631 -47116890 - MIR SINE MIR -23 239 11 357 208 115 35 chr15 54264820 54264953 -47115568 - MIR SINE MIR -66 196 45 2218 196 65 34 chr15 54268049 54268553 -47111968 + MLT2B1 LTR ERVL 1 520 0 320 276 145 7 chr15 54269045 54269190 -47111331 - L1ME4a LINE L1 -92 6029 5865 1870 154 168 8 chr15 54269450 54269819 -47110702 + MSTA LTR MaLR 1 428 0 714 124 297 0 chr15 54271614 54271759 -47108762 - MER5A DNA MER1_type -1 188 1 2205 100 3 3 chr15 54272452 54272763 -47107758 - AluSp SINE Alu -2 311 1 231 303 113 21 chr15 54273362 54273504 -47107017 - L3 LINE CR1 -292 1285 1131 2390 62 0 3 chr15 54274889 54275196 -47105325 - AluY SINE Alu -4 307 2 411 325 118 18 chr15 54275362 54275590 -47104931 - L1ME4a LINE L1 -58 6063 5813 519 272 49 6 chr15 54275651 54275813 -47104708 - MIR SINE MIR -2 260 92 272 286 0 0 chr15 54275907 54275970 -47104551 - L2 LINE L2 0 3272 3210 1907 125 14 0 chr15 54276563 54276851 -47103670 + AluSx SINE Alu 6 297 -15 3585 145 18 29 chr15 54276852 54277506 -47103015 - L1MB7 LINE L1 -15 6169 5523 2196 75 0 14 chr15 54278161 54278456 -47102065 - AluY SINE Alu -20 291 1 202 356 113 26 chr15 54279384 54279578 -47100943 - L3b LINE CR1 -31 1552 1342 596 301 11 0 chr15 54279652 54279835 -47100686 - MIR SINE MIR 0 262 78 1797 283 152 78 chr15 54279835 54281134 -47099387 + HAL1 LINE L1 1 1395 -1112 3174 148 43 21 chr15 54281141 54281210 -47099311 - MER44D DNA MER2_type -1886 601 535 2723 138 24 0 chr15 54281210 54281630 -47098891 + MSTB1 LTR MaLR 1 430 -2 3174 148 43 21 chr15 54281630 54282094 -47098427 - MER44D DNA MER2_type -1952 535 1 2770 252 89 38 chr15 54282096 54283139 -47097382 + HAL1 LINE L1 1400 2495 -12 1963 147 0 3 chr15 54283493 54283806 -47096715 + AluJb SINE Alu 1 312 0 214 254 0 18 chr15 54284102 54284157 -47096364 + CT-rich Low_complexity Low_complexity 2 55 0 1037 146 0 12 chr15 54285069 54285240 -47095281 + AluJb SINE Alu 104 272 -40 1028 184 42 35 chr15 54285523 54285806 -47094715 + MER33 DNA MER1_type 18 302 -22 261 0 0 0 chr15 54287222 54287251 -47093270 + (TG)n Simple_repeat Simple_repeat 2 30 0 3543 188 43 31 chr15 54287281 54288079 -47092442 - L1MB8 LINE L1 -22 6156 5350 247 274 0 0 chr15 54288335 54288386 -47092135 + L2 LINE L2 2724 2774 -540 303 304 72 48 chr15 54288545 54288670 -47091851 + L2 LINE L2 3144 3271 -1 180 0 0 0 chr15 54288695 54288715 -47091806 + (GGAA)n Simple_repeat Simple_repeat 2 21 0 465 256 173 16 chr15 54289885 54290076 -47090445 - MIR SINE MIR -14 248 28 1258 232 47 25 chr15 54290316 54290689 -47089832 + LTR16A LTR ERVL 61 457 0 358 245 168 32 chr15 54290976 54291131 -47089390 - MIR3 SINE MIR -16 192 17 285 268 145 14 chr15 54291930 54292068 -47088453 - MER103 DNA DNA -7 159 4 513 209 45 9 chr15 54292284 54292394 -47088127 + MER81 DNA DNA 1 114 0 320 253 55 75 chr15 54293458 54293604 -47086917 - L2 LINE L2 0 3313 3171 1069 220 191 6 chr15 54293610 54293955 -47086566 - L2 LINE L2 -530 2784 2376 367 343 157 24 chr15 54294021 54294096 -47086425 - MER91A DNA MER1_type -8 188 124 3833 139 20 0 chr15 54294096 54294687 -47085834 - LTR26 LTR ERV1 0 603 1 367 343 157 24 chr15 54294687 54294777 -47085744 - MER91A DNA MER1_type -72 124 1 481 281 108 6 chr15 54295327 54295494 -47085027 - MIR SINE MIR -56 206 23 412 302 44 25 chr15 54295702 54295861 -47084660 + MER5B DNA MER1_type 17 178 0 1063 339 102 13 chr15 54295961 54296595 -47083926 - L3 LINE CR1 -174 1403 713 1630 177 10 3 chr15 54296723 54297017 -47083504 - AluJb SINE Alu -16 296 1 972 251 52 19 chr15 54297268 54297539 -47082982 + LTR16A1 LTR ERVL 161 440 -17 188 268 188 18 chr15 54298623 54298735 -47081786 + L2 LINE L2 2951 3081 -191 813 309 4 9 chr15 54298795 54299025 -47081496 + MIR SINE MIR 13 241 -21 378 268 203 0 chr15 54299027 54299165 -47081356 + L2 LINE L2 3103 3268 -4 246 242 155 62 chr15 54299764 54299925 -47080596 + L3b LINE CR1 1104 1279 -304 221 313 130 35 chr15 54300728 54300843 -47079678 - L2 LINE L2 -1 3271 3146 544 221 144 46 chr15 54301001 54301195 -47079326 + MIR SINE MIR 4 218 -44 393 214 98 45 chr15 54301236 54301348 -47079173 + MIR3 SINE MIR 76 193 -15 593 277 44 44 chr15 54301816 54302065 -47078456 + MIR SINE MIR 6 254 -8 250 254 0 0 chr15 54302065 54302120 -47078401 + L2 LINE L2 2982 3036 -236 186 71 0 0 chr15 54302560 54302588 -47077933 + (CCCGG)n Simple_repeat Simple_repeat 3 30 0 22 70 0 0 chr15 54302634 54302677 -47077844 + GC_rich Low_complexity Low_complexity 1 43 0 206 214 0 143 chr15 54304824 54304862 -47075659 - L2 LINE L2 -210 3062 3041 1957 135 0 0 chr15 54304862 54305151 -47075370 - AluSx SINE Alu -23 289 1 206 214 0 143 chr15 54305151 54305196 -47075325 - L2 LINE L2 -231 3041 2991 298 259 0 0 chr15 54305266 54305324 -47075197 + Tigger3(Golem) DNA MER2_type 2 59 -2970 928 184 0 7 chr15 54305325 54305477 -47075044 + Tigger3(Golem) DNA MER2_type 2878 3028 -1 218 273 156 32 chr15 54307288 54307442 -47073079 + L2 LINE L2 2648 2820 -494 694 200 67 24 chr15 54307979 54308144 -47072377 + MER5B DNA MER1_type 1 172 -6 370 148 16 0 chr15 54308437 54308498 -47072023 + MER58 DNA MER1_type 2359 2420 0 197 246 14 101 chr15 54309174 54309243 -47071278 - L2 LINE L2 -16 3256 3194 783 265 36 4 chr15 54309746 54309999 -47070522 - MIR SINE MIR -1 261 1 202 343 19 48 chr15 54310059 54310164 -47070357 + L2 LINE L2 3191 3292 -21 1661 169 19 7 chr15 54311537 54311845 -47068676 + AluJo SINE Alu 1 312 0 317 221 130 0 chr15 54311886 54311963 -47068558 - MIR SINE MIR -113 149 63 266 213 0 13 chr15 54311963 54312038 -47068483 + (TG)n Simple_repeat Simple_repeat 1 74 0 293 294 274 4 chr15 54312430 54312678 -47067843 + L3 LINE CR1 1120 1434 -143 188 284 90 30 chr15 54312785 54312852 -47067669 + MIR3 SINE MIR 124 194 -14 1679 172 22 81 chr15 54312941 54313349 -47067172 - MLT1B LTR MaLR -3 387 4 738 260 117 17 chr15 54313417 54313648 -47066873 + MIR SINE MIR 8 261 -1 2978 142 23 2 chr15 54314053 54314539 -47065982 - L1MB3 LINE L1 0 6183 5688 266 322 220 22 chr15 54315572 54315799 -47064722 - L2 LINE L2 -7 3265 2994 643 218 37 65 chr15 54315839 54316055 -47064466 - L2 LINE L2 -1 3312 3103 2020 252 118 32 chr15 54316451 54317266 -47063255 + L1MC4 LINE L1 6800 7705 -337 1756 43 0 5 chr15 54317266 54317476 -47063045 + L1PA3 LINE L1 5944 6152 -3 2020 252 118 32 chr15 54317476 54317586 -47062935 + L1MC4 LINE L1 7705 7804 -238 260 300 160 10 chr15 54319320 54319420 -47061101 + MIR SINE MIR 121 235 -27 207 370 32 36 chr15 54319525 54319744 -47060777 + L2 LINE L2 2871 3088 -184 280 225 75 25 chr15 54319888 54319968 -47060553 + L2 LINE L2 3224 3307 -6 1251 201 206 5 chr15 54319979 54320368 -47060153 - MLT1C LTR MaLR 0 467 1 290 314 65 16 chr15 54321250 54321374 -47059147 + MIR3 SINE MIR 30 159 -49 378 328 46 46 chr15 54321827 54322022 -47058499 - MIR SINE MIR -21 241 47 1020 195 0 0 chr15 54322472 54322641 -47057880 - FAM SINE Alu -6 169 1 308 295 116 27 chr15 54323229 54323341 -47057180 - L2 LINE L2 -1 3312 3191 2343 73 0 3 chr15 54323666 54323969 -47056552 - AluY SINE Alu -9 302 1 212 0 0 35 chr15 54324093 54324122 -47056399 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 1752 180 0 0 chr15 54324124 54324408 -47056113 - AluJb SINE Alu -28 284 1 310 273 212 4 chr15 54324428 54324659 -47055862 - L1MC5 LINE L1 -39 7922 7644 406 254 139 117 chr15 54324960 54325378 -47055143 - L2 LINE L2 -4 3268 2842 31 26 0 0 chr15 54325623 54325661 -47054860 + AT_rich Low_complexity Low_complexity 1 38 0 1704 141 39 14 chr15 54326970 54327095 -47053426 + AluSx SINE Alu 1 121 -191 2181 99 7 0 chr15 54327095 54327398 -47053123 + AluSc SINE Alu 1 305 -4 1704 141 39 14 chr15 54327398 54327556 -47052965 + AluSx SINE Alu 121 291 -21 225 0 0 0 chr15 54327560 54327585 -47052936 + (T)n Simple_repeat Simple_repeat 1 25 0 452 292 101 36 chr15 54327885 54328053 -47052468 + MIR SINE MIR 78 256 -6 416 353 18 12 chr15 54328534 54328704 -47051817 - MER91A DNA MER1_type -25 171 1 237 306 0 0 chr15 54329235 54329297 -47051224 - MLT1L LTR MaLR -412 203 142 481 141 91 41 chr15 54329400 54329521 -47051000 - L1ME4a LINE L1 -18 6103 5977 285 239 119 50 chr15 54329682 54329841 -47050680 + MIR3 SINE MIR 3 172 -36 1303 152 86 83 chr15 54330087 54330389 -47050132 - AluJb SINE Alu -9 303 1 308 216 45 8 chr15 54331697 54331831 -47048690 + (TA)n Simple_repeat Simple_repeat 2 140 0 2319 80 3 10 chr15 54331937 54332249 -47048272 - AluY SINE Alu -1 310 1 360 298 61 24 chr15 54332645 54332871 -47047650 + L1MC4a LINE L1 4054 4281 -1865 23 0 0 0 chr15 54332923 54332946 -47047575 + AT_rich Low_complexity Low_complexity 1 23 0 1386 286 97 42 chr15 54333022 54334188 -47046333 + L1MC4a LINE L1 4498 5101 -1045 2152 133 0 0 chr15 54334188 54334482 -47046039 + AluSx SINE Alu 1 294 -18 1386 286 97 42 chr15 54334482 54334739 -47045782 + L1MC4a LINE L1 5101 5342 -804 23 0 0 0 chr15 54334788 54334811 -47045710 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr15 54334917 54334943 -47045578 + AT_rich Low_complexity Low_complexity 1 26 0 2005 78 0 68 chr15 54335796 54336091 -47044430 - AluSx SINE Alu -14 298 24 300 324 66 0 chr15 54336178 54336314 -47044207 + MIR SINE MIR 48 192 -70 197 167 0 0 chr15 54338082 54338118 -47042403 + GA-rich Low_complexity Low_complexity 1 36 0 295 251 139 117 chr15 54338461 54338879 -47041642 + L2 LINE L2 2842 3268 -4 304 276 217 0 chr15 54339192 54339409 -47041112 + L1MC5 LINE L1 7659 7922 -39 1868 180 0 0 chr15 54339429 54339713 -47040808 + AluJb SINE Alu 1 284 -28 180 0 0 0 chr15 54339715 54339735 -47040786 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 921 124 149 25 chr15 54339868 54340029 -47040492 + AluSq SINE Alu 1 181 -132 180 0 0 0 chr15 54340858 54340878 -47039643 + (TTCC)n Simple_repeat Simple_repeat 2 21 0 260 304 72 48 chr15 54340903 54341028 -47039493 - L2 LINE L2 -1 3271 3144 226 274 0 0 chr15 54341187 54341238 -47039283 - L2 LINE L2 -540 2774 2724 3587 188 43 31 chr15 54341494 54342292 -47038229 + L1MB8 LINE L1 5350 6156 -22 225 0 0 0 chr15 54342322 54342347 -47038174 + (CA)n Simple_repeat Simple_repeat 2 26 0 1049 184 42 35 chr15 54343763 54344046 -47036475 - MER33 DNA MER1_type -22 302 18 1102 149 0 22 chr15 54344321 54344502 -47036019 - AluJb SINE Alu -34 278 102 214 254 0 18 chr15 54345412 54345467 -47035054 + GA-rich Low_complexity Low_complexity 2 55 0 1920 166 0 6 chr15 54345763 54346076 -47034445 - AluJb SINE Alu 0 312 2 258 32 0 0 chr15 54346102 54346133 -47034388 + (TG)n Simple_repeat Simple_repeat 2 32 0 2211 125 22 33 chr15 54346246 54346614 -47033907 + THE1B LTR MaLR 1 364 0 246 105 0 0 chr15 54347784 54347822 -47032699 + (T)n Simple_repeat Simple_repeat 1 38 0 215 340 75 34 chr15 54348188 54348335 -47032186 - L2 LINE L2 -4 3268 3116 267 103 0 0 chr15 54349140 54349179 -47031342 + (GGAGAA)n Simple_repeat Simple_repeat 5 43 0 343 254 152 22 chr15 54349387 54349525 -47030996 - MIR3 SINE MIR -12 196 41 235 281 0 0 chr15 54349593 54349657 -47030864 + MIR3 SINE MIR 145 208 0 1390 201 68 7 chr15 54349989 54350283 -47030238 - AluJo SINE Alu 0 312 1 2541 74 0 3 chr15 54350533 54350844 -47029677 + AluSg SINE Alu 1 310 0 309 227 128 79 chr15 54350898 54351101 -47029420 - L1ME4a LINE L1 -30 6091 5879 210 353 46 13 chr15 54352524 54352677 -47027844 - MIR SINE MIR -29 233 76 259 290 163 32 chr15 54353872 54354124 -47026397 - L3 LINE CR1 -189 1388 1104 257 182 0 30 chr15 54354519 54354585 -47025936 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 1267 186 24 4 chr15 54356077 54356325 -47024196 + L1PA16 LINE L1 5912 6164 -2 1983 206 75 85 chr15 54357242 54357957 -47022564 - L1ME1 LINE L1 0 6166 5459 323 75 151 0 chr15 54357957 54358010 -47022511 + U7 snRNA snRNA 2 62 -1 934 103 0 109 chr15 54358149 54358323 -47022198 - MER93b LTR ERV1 -216 157 3 193 257 0 43 chr15 54359597 54359667 -47020854 + MER5B DNA MER1_type 106 172 -6 188 375 102 0 chr15 54360431 54360519 -47020002 - L2 LINE L2 -61 3211 3115 853 248 39 17 chr15 54361796 54362030 -47018491 - L1ME4a LINE L1 -391 5730 5492 372 225 93 54 chr15 54362538 54362617 -47017904 + L1ME3A LINE L1 6020 6107 -63 2015 189 150 5 chr15 54362617 54363057 -47017464 + MLT1D LTR MaLR 1 504 -1 372 225 93 54 chr15 54363057 54363106 -47017415 + L1ME3A LINE L1 6107 6153 -17 380 243 29 10 chr15 54363539 54363642 -47016879 - MER97b DNA MER1_type? -930 123 19 195 139 0 0 chr15 54363715 54363751 -47016770 + (A)n Simple_repeat Simple_repeat 1 36 0 434 198 167 24 chr15 54363803 54363929 -47016592 - L1ME3 LINE L1 -1 6161 6018 523 297 63 13 chr15 54364540 54364779 -47015742 - MIR SINE MIR 0 262 12 303 270 11 17 chr15 54365521 54365624 -47014897 + CT-rich Low_complexity Low_complexity 3 177 0 189 247 86 37 chr15 54366699 54366780 -47013741 - L2 LINE L2 -50 3263 3179 224 150 0 0 chr15 54368622 54368662 -47011859 + L2 LINE L2 3272 3311 -2 244 310 0 0 chr15 54368977 54369048 -47011473 - MER94 DNA DNA -63 71 1 264 125 0 54 chr15 54369607 54369663 -47010858 + Alu SINE Alu 1 53 -250 190 294 156 0 chr15 54370469 54370578 -47009943 - L2 LINE L2 0 3272 3147 192 40 0 0 chr15 54370987 54371012 -47009509 + (T)n Simple_repeat Simple_repeat 1 25 0 562 181 163 56 chr15 54371257 54371417 -47009104 - MER5B DNA MER1_type -1 177 1 1707 175 16 3 chr15 54371695 54371874 -47008647 - AluJo SINE Alu -5 307 121 183 80 0 0 chr15 54371874 54371899 -47008622 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1707 175 16 3 chr15 54371899 54372022 -47008499 - AluJo SINE Alu -191 121 1 338 283 58 22 chr15 54372760 54372898 -47007623 + MIR SINE MIR 120 262 0 209 247 70 96 chr15 54375775 54375931 -47004590 - MIR SINE MIR -67 141 6 32 0 0 0 chr15 54376248 54376280 -47004241 + AT_rich Low_complexity Low_complexity 1 32 0 833 283 122 29 chr15 54376363 54377002 -47003519 - L1ME LINE L1 -358 5804 5101 793 188 48 88 chr15 54377066 54377316 -47003205 + L2 LINE L2 3072 3311 -2 536 267 62 29 chr15 54377742 54377952 -47002569 + MIR SINE MIR 12 228 -34 911 163 6 30 chr15 54379801 54379967 -47000554 - MER4B LTR ERV1 -448 162 1 1277 256 156 37 chr15 54381480 54381910 -46998611 + MLT1G1 LTR MaLR 25 505 -90 188 391 0 0 chr15 54381948 54382017 -46998504 + L2 LINE L2 1531 1599 -1715 454 324 137 12 chr15 54382017 54382472 -46998049 - L2 LINE L2 0 3313 2747 430 216 105 13 chr15 54382474 54382618 -46997903 + MLT1F1 LTR MaLR 2 167 -400 2725 207 84 54 chr15 54382618 54382728 -46997793 + L1ME1 LINE L1 5330 5435 -743 781 194 0 0 chr15 54382728 54382857 -46997664 + FLAM_A SINE Alu 1 129 -4 2725 207 84 54 chr15 54382857 54383599 -46996922 + L1ME1 LINE L1 5435 6176 -2 270 281 117 23 chr15 54383671 54383842 -46996679 + L2 LINE L2 1860 2046 -1268 231 288 25 0 chr15 54383906 54383986 -46996535 + L2 LINE L2 2308 2389 -925 1699 164 7 30 chr15 54384003 54384307 -46996214 - AluJb SINE Alu -15 297 1 290 149 7 0 chr15 54384263 54384318 -46996203 - Alu SINE Alu -256 44 1 25 31 0 0 chr15 54384801 54384833 -46995688 + AT_rich Low_complexity Low_complexity 1 32 0 463 279 112 29 chr15 54384840 54385188 -46995333 + L1MC/D LINE L1 4792 5168 -978 323 211 138 53 chr15 54385260 54385412 -46995109 + L1MC/D LINE L1 5267 5431 -690 225 312 42 53 chr15 54385471 54385660 -46994861 + L1MC/D LINE L1 5550 5736 -434 247 204 0 0 chr15 54385710 54385759 -46994762 + L1MC/D LINE L1 5851 5899 -1909 2557 199 93 43 chr15 54385821 54386449 -46994072 - L1ME1 LINE L1 -5 6161 5497 2193 117 0 13 chr15 54386449 54386765 -46993756 - AluSx SINE Alu 0 312 1 2557 199 93 43 chr15 54386765 54386803 -46993718 - L1ME1 LINE L1 -669 5497 5462 1614 178 42 3 chr15 54387070 54387237 -46993284 - AluJo SINE Alu -14 298 114 306 0 0 0 chr15 54387237 54387271 -46993250 + (TG)n Simple_repeat Simple_repeat 1 34 0 1614 178 42 3 chr15 54387271 54387390 -46993131 - AluJo SINE Alu -198 114 1 420 231 51 26 chr15 54389958 54390075 -46990446 + MIR3 SINE MIR 87 206 -2 24 0 0 0 chr15 54391058 54391082 -46989439 + AT_rich Low_complexity Low_complexity 1 24 0 571 207 36 9 chr15 54392070 54392181 -46988340 + MER90 LTR ERV1 1 114 -500 1534 251 30 5 chr15 54392184 54392551 -46987970 + L1MC4a LINE L1 4571 4946 -1200 301 160 0 0 chr15 54392578 54392628 -46987893 - MLT1F1 LTR MaLR 0 567 518 264 291 12 0 chr15 54393063 54393149 -46987372 - MIR SINE MIR -79 129 43 266 349 47 9 chr15 54393175 54393281 -46987240 + MIR SINE MIR 81 190 -72 561 284 69 16 chr15 54394241 54394558 -46985963 + L1MC4a LINE L1 5494 5800 -321 1948 155 5 55 chr15 54395447 54395590 -46984931 + MLT1A1 LTR MaLR 17 165 -200 2244 106 3 0 chr15 54395590 54395883 -46984638 + AluSp SINE Alu 1 294 -19 1948 155 5 55 chr15 54395883 54396106 -46984415 + MLT1A1 LTR MaLR 165 365 0 570 232 99 51 chr15 54396276 54396673 -46983848 + LTR33 LTR ERVL 1 464 -57 343 307 92 71 chr15 54396789 54397272 -46983249 - L2 LINE L2 -252 3020 2513 1119 253 135 25 chr15 54397272 54397636 -46982885 + MLT1J2 LTR MaLR 14 417 -33 2106 122 0 3 chr15 54397888 54398182 -46982339 - AluSx SINE Alu -19 293 1 288 0 0 0 chr15 54399166 54399198 -46981323 + (TG)n Simple_repeat Simple_repeat 1 32 0 326 332 89 25 chr15 54399550 54399752 -46980769 - MIR SINE MIR -35 227 13 591 186 39 39 chr15 54400160 54400289 -46980232 - L2 LINE L2 -5 3308 3180 279 0 0 0 chr15 54400306 54400337 -46980184 + (CA)n Simple_repeat Simple_repeat 2 32 0 205 233 0 0 chr15 54400448 54400491 -46980030 - L2 LINE L2 0 3313 3271 2332 93 3 0 chr15 54400492 54400782 -46979739 - AluSp SINE Alu -21 292 2 2001 128 7 23 chr15 54401291 54401597 -46978924 - AluSx SINE Alu -11 301 1 863 163 0 15 chr15 54401620 54401755 -46978766 - FLAM_C SINE Alu 0 133 1 517 253 11 56 chr15 54401755 54401945 -46978576 - MIR SINE MIR -47 215 38 329 279 162 9 chr15 54402215 54402326 -46978195 + MIR3 SINE MIR 32 159 -49 242 173 0 58 chr15 54402612 54402664 -46977857 + L2 LINE L2 3264 3312 -1 603 74 0 0 chr15 54403198 54403279 -46977242 + (TA)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr15 54403445 54403466 -46977055 + AT_rich Low_complexity Low_complexity 1 21 0 321 322 87 0 chr15 54403488 54403637 -46976884 - MIR3 SINE MIR -14 194 33 313 308 176 6 chr15 54404176 54404335 -46976186 + L2 LINE L2 3086 3271 -1 423 249 52 27 chr15 54404895 54405149 -46975372 - L1ME4a LINE L1 -153 5968 5708 199 333 157 0 chr15 54405626 54405734 -46974787 + L2 LINE L2 3189 3313 0 528 93 0 0 chr15 54406158 54406233 -46974288 + (CA)n Simple_repeat Simple_repeat 1 75 0 185 295 39 128 chr15 54406594 54406852 -46973669 - L2 LINE L2 -4 3268 3034 3610 251 94 32 chr15 54407158 54410241 -46970280 + L1MC5 LINE L1 25 3280 -2800 665 253 65 8 chr15 54410243 54410488 -46970033 + L1MC5 LINE L1 4855 5113 -967 802 141 16 8 chr15 54410491 54410619 -46969902 + AluSq/x SINE Alu 3 131 -182 319 274 38 28 chr15 54410720 54410826 -46969695 - MIR SINE MIR -59 149 43 498 308 48 35 chr15 54410846 54411073 -46969448 - MIR SINE MIR -3 259 30 700 315 30 0 chr15 54411084 54411287 -46969234 + MER63A DNA MER1_type 2 210 0 843 252 23 41 chr15 54411957 54412175 -46968346 - MIR SINE MIR -22 240 27 208 147 0 0 chr15 54412855 54412889 -46967632 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 1309 247 82 16 chr15 54413209 54413586 -46966935 + LTR16C LTR ERVL 87 488 -3 427 270 150 49 chr15 54414131 54414357 -46966164 + MIR SINE MIR 8 256 -6 330 263 289 5 chr15 54414310 54414500 -46966021 - MIR SINE MIR -15 247 4 * 188 286 57 0 chr15 54414500 54414558 -46965963 + L2 LINE L2 3196 3257 -15 459 251 86 38 chr15 54414888 54415124 -46965397 + MIR SINE MIR 12 261 -1 201 74 0 0 chr15 54415578 54415605 -46964916 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 1959 156 0 0 chr15 54416322 54416617 -46963904 + AluJo SINE Alu 1 295 -17 1168 255 156 82 chr15 54416633 54418823 -46961698 + L1MC5 LINE L1 5478 7845 -50 233 325 16 15 chr15 54419370 54419544 -46960977 + GA-rich Low_complexity Low_complexity 1 174 0 825 176 0 8 chr15 54420112 54420243 -46960278 + FLAM_C SINE Alu 2 131 -2 192 133 0 0 chr15 54421113 54421143 -46959378 - MIR SINE MIR -142 120 91 502 136 80 32 chr15 54423582 54423707 -46956814 - Charlie1 DNA MER1_type -12 2749 2619 * 951 147 83 0 chr15 54423700 54423857 -46956664 - Charlie1 DNA MER1_type -2534 227 58 705 190 0 16 chr15 54424923 54425044 -46955477 + FLAM_A SINE Alu 2 120 -13 275 319 197 22 chr15 54426423 54426874 -46953647 + L2 LINE L2 2196 2725 -589 1358 152 30 17 chr15 54428485 54428715 -46951806 + AluJo SINE Alu 72 304 -8 2211 89 9 29 chr15 54429316 54429632 -46950889 - AluY SINE Alu -1 310 1 600 116 0 0 chr15 54430807 54430902 -46949619 - Alu SINE Alu -1 309 215 453 262 164 39 chr15 54431559 54431944 -46948577 - L1ME4a LINE L1 -89 6032 5600 301 276 60 22 chr15 54432075 54432209 -46948312 - L1ME4a LINE L1 -748 5430 5292 843 223 200 53 chr15 54432985 54433428 -46947093 - L1ME3A LINE L1 -207 5963 5422 2125 109 14 0 chr15 54433428 54433722 -46946799 - AluY SINE Alu -13 298 1 843 223 200 53 chr15 54433722 54433829 -46946692 - L1ME3A LINE L1 -748 5422 5332 856 128 14 54 chr15 54433829 54433977 -46946544 - FRAM SINE Alu -15 161 20 681 255 116 90 chr15 54434013 54434177 -46946344 - L1ME3A LINE L1 -824 5322 5164 873 163 31 0 chr15 54434177 54434306 -46946215 - FLAM_C SINE Alu 0 133 1 681 255 116 90 chr15 54434306 54434840 -46945681 - L1ME3A LINE L1 -982 5164 4606 4011 9 0 0 chr15 54435318 54435762 -46944759 - L1HS LINE L1 0 6155 5712 207 327 106 0 chr15 54437526 54437630 -46942891 - MIR3 SINE MIR -18 190 76 1923 280 129 29 chr15 54438295 54438554 -46941967 + L2 LINE L2 1784 2016 -1298 15280 112 14 53 chr15 54438554 54439058 -46941463 + Tigger1 DNA MER2_type 1 523 -1895 2542 75 0 0 chr15 54439058 54439363 -46941158 + AluSx SINE Alu 1 305 -7 15280 112 14 53 chr15 54439363 54439914 -46940607 + Tigger1 DNA MER2_type 523 1094 -1324 2519 72 0 0 chr15 54439914 54440221 -46940300 + AluY SINE Alu 1 307 -4 15280 112 14 53 chr15 54440221 54441156 -46939365 + Tigger1 DNA MER2_type 1094 1874 -544 1618 183 0 24 chr15 54441156 54441451 -46939070 - AluJb SINE Alu -23 289 2 15280 112 14 53 chr15 54441451 54441976 -46938545 + Tigger1 DNA MER2_type 1874 2418 0 1923 280 129 29 chr15 54441976 54442770 -46937751 + L2 LINE L2 2016 2943 -371 1142 103 16 27 chr15 54442778 54442962 -46937559 - Tigger1 DNA MER2_type -776 1642 1461 489 243 290 22 chr15 54442966 54443238 -46937283 + L2 LINE L2 2955 3299 -14 216 0 0 0 chr15 54443243 54443267 -46937254 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 227 238 75 25 chr15 54443445 54443525 -46936996 - MIR SINE MIR -96 166 83 207 311 56 33 chr15 54443975 54444065 -46936456 + MIR SINE MIR 93 184 -78 2351 105 0 3 chr15 54444590 54444895 -46935626 + AluSx SINE Alu 1 304 -8 1547 223 19 45 chr15 54445396 54445613 -46934908 - LTR16A LTR ERVL -25 425 204 1556 216 40 59 chr15 54445613 54446027 -46934494 + MLT1C LTR MaLR 1 406 -61 2284 78 0 29 chr15 54446027 54446039 -46934482 - AluY SINE Alu -13 298 287 462 18 0 0 chr15 54446039 54446094 -46934427 + (TATG)n Simple_repeat Simple_repeat 2 56 0 2284 78 0 29 chr15 54446094 54446388 -46934133 - AluY SINE Alu -24 287 1 1556 216 40 59 chr15 54446388 54446449 -46934072 + MLT1C LTR MaLR 406 467 0 1547 223 19 45 chr15 54446449 54446649 -46933872 - LTR16A LTR ERVL -246 204 19 379 223 19 19 chr15 54446661 54446764 -46933757 + MIR SINE MIR 107 209 -53 272 231 103 13 chr15 54446874 54446952 -46933569 - MIR SINE MIR -106 102 18 226 345 26 35 chr15 54447285 54447398 -46933123 - MIR SINE MIR -64 144 33 1777 160 0 32 chr15 54447621 54447933 -46932588 - AluJo SINE Alu -10 302 1 231 375 21 0 chr15 54449101 54449197 -46931324 + MIR3 SINE MIR 58 155 -53 475 209 19 89 chr15 54449260 54449418 -46931103 - MER103 DNA DNA -8 158 12 2462 249 95 67 chr15 54451772 54453047 -46927474 - HAL1 LINE L1 -10 2497 1187 244 212 141 98 chr15 54453045 54453229 -46927292 - HAL1 LINE L1 -1532 975 784 * 226 289 182 53 chr15 54453255 54453723 -46926798 - HAL1 LINE L1 -1778 729 202 2426 69 0 0 chr15 54453754 54454085 -46926436 - AluY SINE Alu 0 311 1 267 270 226 9 chr15 54454211 54454326 -46926195 - MIR SINE MIR -85 177 38 685 260 12 12 chr15 54454364 54454537 -46925984 + MER5B DNA MER1_type 1 173 -5 660 144 78 50 chr15 54454713 54454741 -46925780 + MER53 DNA DNA 5 31 -158 1884 60 16 12 chr15 54454741 54454991 -46925530 + L1PA8 LINE L1 5918 6168 -4 660 144 78 50 chr15 54454991 54455142 -46925379 + MER53 DNA DNA 31 189 0 626 235 27 0 chr15 54455692 54455841 -46924680 + MER96B DNA MER1_type? 23 175 0 21 0 0 0 chr15 54456566 54456587 -46923934 + AT_rich Low_complexity Low_complexity 1 21 0 445 282 172 0 chr15 54458747 54458923 -46921598 + MIR SINE MIR 57 262 0 257 286 24 0 chr15 54459210 54459294 -46921227 - L2 LINE L2 -62 3251 3166 564 292 62 5 chr15 54459651 54459843 -46920678 - MIR SINE MIR -10 252 50 264 285 123 0 chr15 54460980 54461240 -46919281 + L2 LINE L2 2043 2334 -980 799 248 113 0 chr15 54461813 54462043 -46918478 + MIR SINE MIR 7 262 0 419 203 0 0 chr15 54462249 54462318 -46918203 - MER58A DNA MER1_type -36 71 3 1772 169 19 10 chr15 54464005 54464312 -46916209 - AluJb SINE Alu -2 310 1 225 0 0 0 chr15 54465760 54465785 -46914736 + (TTTTTA)n Simple_repeat Simple_repeat 1 25 0 319 339 36 16 chr15 54466446 54466638 -46913883 + MIR SINE MIR 21 216 -46 901 152 0 0 chr15 54467415 54467560 -46912961 + AluSg/x SINE Alu 168 312 0 593 219 25 6 chr15 54467880 54468040 -46912481 + MER96B DNA MER1_type? 255 417 0 184 106 0 43 chr15 54468399 54468446 -46912075 + (TTTTTA)n Simple_repeat Simple_repeat 2 46 0 259 313 44 50 chr15 54468794 54468976 -46911545 + MIR SINE MIR 27 207 -55 659 204 89 1 chr15 54469568 54469841 -46910680 + MLT1A1 LTR MaLR 25 365 0 280 257 19 38 chr15 54470908 54471013 -46909508 - MIR3 SINE MIR -18 190 88 258 308 115 15 chr15 54471319 54471449 -46909072 - MER103 DNA DNA -21 145 3 243 254 0 0 chr15 54471551 54471610 -46908911 + MER5A DNA MER1_type 131 189 0 319 202 109 50 chr15 54471623 54471742 -46908779 - MER5B DNA MER1_type -5 173 48 742 178 72 0 chr15 54471748 54471900 -46908621 - L1MB4 LINE L1 -8 6172 6010 209 197 33 16 chr15 54471901 54471962 -46908559 - MER5B DNA MER1_type -113 65 4 545 234 145 34 chr15 54472253 54472488 -46908033 + MIR SINE MIR 2 262 0 474 274 113 72 chr15 54473778 54474287 -46906234 - Charlie8 DNA MER1_type -2183 234 11 727 214 0 14 chr15 54474486 54474626 -46905895 + FRAM SINE Alu 1 138 -38 519 217 204 0 chr15 54474661 54474818 -46905703 - MIR SINE MIR -72 190 2 1603 207 72 22 chr15 54475141 54475503 -46905018 - MLT1D LTR MaLR 0 505 126 1661 192 86 9 chr15 54475503 54475842 -46904679 - MLT1B LTR MaLR 0 390 26 575 225 0 17 chr15 54475854 54475974 -46904547 - MLT1D LTR MaLR -380 125 8 968 253 30 4 chr15 54476469 54476734 -46903787 + L1MD3 LINE L1 7714 7985 -10 2012 154 3 3 chr15 54478046 54478358 -46902163 + AluSx SINE Alu 1 312 0 24 0 0 0 chr15 54478358 54478382 -46902139 + AT_rich Low_complexity Low_complexity 1 24 0 2582 131 68 2 chr15 54479472 54479914 -46900607 - L1MB3 LINE L1 -1 6182 5712 1328 161 77 7 chr15 54479914 54480188 -46900333 - MER33 DNA MER1_type -31 293 1 284 216 80 45 chr15 54480633 54480721 -46899800 - L2 LINE L2 -23 3290 3200 927 174 33 16 chr15 54483087 54483271 -46897250 - LTR32 LTR ERVL 0 471 285 * 2125 121 3 34 chr15 54483269 54483592 -46896929 - LTR32 LTR ERVL -144 327 15 1374 203 14 3 chr15 54483885 54484171 -46896350 - L1MB7 LINE L1 -19 6165 5877 232 294 0 0 chr15 54485203 54485296 -46895225 + MIR SINE MIR 51 144 -64 197 268 28 14 chr15 54485325 54485396 -46895125 + MIR3 SINE MIR 130 201 -7 333 205 172 73 chr15 54485541 54485692 -46894829 + L1MC4 LINE L1 7551 7716 -326 872 214 29 6 chr15 54486689 54486862 -46893659 + MER20 DNA MER1_type 42 218 -1 21 0 0 0 chr15 54487100 54487121 -46893400 + AT_rich Low_complexity Low_complexity 1 21 0 747 199 19 25 chr15 54487121 54487282 -46893239 + MER5B DNA MER1_type 19 178 0 583 257 55 102 chr15 54487865 54488656 -46891865 - L1ME3A LINE L1 -204 5966 5223 1411 173 0 54 chr15 54488665 54488942 -46891579 - AluJo SINE Alu -1 311 50 763 163 65 33 chr15 54489056 54489240 -46891281 + L1MD3 LINE L1 7799 7988 -7 289 315 42 13 chr15 54489241 54489425 -46891096 - L1ME3A LINE L1 -1065 5081 4885 287 348 103 26 chr15 54489732 54489887 -46890634 - MIR3 SINE MIR -12 196 30 266 433 19 10 chr15 54489876 54490190 -46890331 + L2 LINE L2 2357 2673 -641 * 899 160 23 29 chr15 54490262 54490437 -46890084 - L1PA12 LINE L1 -5 6163 5990 293 414 38 0 chr15 54490481 54490667 -46889854 + L2 LINE L2 2870 3062 -210 273 57 0 0 chr15 54493066 54493101 -46887420 + (T)n Simple_repeat Simple_repeat 1 35 0 204 247 32 65 chr15 54493131 54493224 -46887297 - MIR SINE MIR -77 131 42 265 285 76 14 chr15 54494263 54494407 -46886114 + L1M3b LINE L1 4 156 -6125 847 154 41 18 chr15 54494422 54494591 -46885930 + L1MA6 LINE L1 6128 6300 0 834 144 52 23 chr15 54494608 54494781 -46885740 + MLT1B LTR MaLR 168 345 -45 432 0 0 0 chr15 54494907 54494955 -46885566 + (T)n Simple_repeat Simple_repeat 1 48 0 312 320 19 10 chr15 54495043 54495146 -46885375 + MER91A DNA MER1_type 12 115 -81 22 0 0 0 chr15 54495224 54495246 -46885275 + AT_rich Low_complexity Low_complexity 1 22 0 2134 116 7 0 chr15 54495253 54495564 -46884957 + AluSq SINE Alu 1 313 0 24 32 0 0 chr15 54496365 54496396 -46884125 + AT_rich Low_complexity Low_complexity 1 31 0 245 229 102 102 chr15 54496665 54496822 -46883699 - MIR SINE MIR 0 262 106 204 321 109 42 chr15 54497789 54497954 -46882567 + L2 LINE L2 2979 3154 -118 225 0 0 0 chr15 54498125 54498150 -46882371 + (CA)n Simple_repeat Simple_repeat 2 26 0 212 269 154 62 chr15 54500054 54500184 -46880337 - MIR SINE MIR -70 192 51 818 210 125 5 chr15 54500701 54500855 -46879666 - MER58A DNA MER1_type -2196 224 39 2127 114 0 3 chr15 54500855 54501144 -46879377 + AluSx SINE Alu 1 288 -24 818 210 125 5 chr15 54501144 54501189 -46879332 - MER58A DNA MER1_type -2381 39 1 266 362 17 9 chr15 54501693 54501809 -46878712 + MIR3 SINE MIR 15 131 -77 4996 158 60 10 chr15 54501826 54503012 -46877509 + L1MB3 LINE L1 4935 6181 -2 201 261 22 0 chr15 54503045 54503091 -46877430 + L3 LINE CR1 1529 1575 -2 247 295 11 53 chr15 54503242 54503337 -46877184 - MIR SINE MIR -108 154 64 241 316 124 49 chr15 54503698 54504109 -46876412 - L2 LINE L2 -10 3262 2821 259 286 33 0 chr15 54504483 54504574 -46875947 + CT-rich Low_complexity Low_complexity 2 95 0 396 258 11 0 chr15 54505200 54505293 -46875228 - L2 LINE L2 -11 3261 3168 282 329 96 84 chr15 54506028 54506372 -46874149 + L2 LINE L2 2921 3268 -4 280 330 62 0 chr15 54506558 54506655 -46873866 + L2 LINE L2 3170 3272 0 614 201 0 83 chr15 54506702 54506814 -46873707 - Zaphod DNA AcHobo 0 4031 3936 2056 115 7 0 chr15 54506814 54507100 -46873421 + AluSx SINE Alu 15 302 -10 614 201 0 83 chr15 54507100 54507156 -46873365 - Zaphod DNA AcHobo -95 3936 3877 1123 256 75 37 chr15 54507259 54507607 -46872914 - MER115 DNA AcHobo -332 361 1 856 168 0 7 chr15 54507635 54507772 -46872749 - L1PB3 LINE L1 -8 6146 6011 452 297 40 11 chr15 54508763 54508938 -46871583 + MIR3 SINE MIR 12 191 -17 315 286 46 32 chr15 54509045 54509232 -46871289 + MIR SINE MIR 1 145 -63 207 207 65 0 chr15 54509779 54509843 -46870678 + MIR SINE MIR 112 180 -82 373 297 50 0 chr15 54510409 54510510 -46870011 - L2 LINE L2 -31 3241 3136 214 290 32 16 chr15 54510743 54510805 -46869716 - MIR SINE MIR -116 146 84 426 231 83 0 chr15 54511169 54511290 -46869231 + MIR SINE MIR 111 241 -21 748 284 31 14 chr15 54512094 54512316 -46868205 - MLT1L LTR MaLR -4 611 386 409 204 129 0 chr15 54512387 54512480 -46868041 - MLT1L LTR MaLR -363 252 148 203 174 0 116 chr15 54514160 54514229 -46866292 - L2 LINE L2 -71 3242 3182 479 263 23 23 chr15 54515319 54515490 -46865031 - L1ME4a LINE L1 -278 5843 5673 5822 161 29 33 chr15 54515598 54517520 -46863001 - L1MA9 LINE L1 0 6312 4397 5696 171 20 15 chr15 54517518 54518644 -46861877 + L1 LINE L1 3315 4446 -1700 * 462 293 16 0 chr15 54518884 54519007 -46861514 + MER94 DNA DNA 6 130 -4 283 274 153 40 chr15 54519813 54520386 -46860135 + L1 LINE L1 3588 4234 -1912 1027 240 42 9 chr15 54520388 54520605 -46859916 + MER58A DNA MER1_type 1 224 0 401 191 21 0 chr15 54520655 54520749 -46859772 + (TATATG)n Simple_repeat Simple_repeat 3 98 0 2168 98 0 48 chr15 54520749 54521064 -46859457 - AluSq SINE Alu -13 300 1 735 232 83 95 chr15 54521342 54521764 -46858757 - MLT1J1 LTR MaLR -29 417 1 383 255 10 0 chr15 54522356 54522458 -46858063 + MIR SINE MIR 105 207 -55 386 258 242 0 chr15 54523201 54523329 -46857192 + MIR SINE MIR 92 250 -12 276 301 115 39 chr15 54524246 54524532 -46855989 + L1ME3A LINE L1 5633 5940 -230 31825 103 22 61 chr15 54524702 54531099 -46849422 - L1PA7 LINE L1 0 6154 12 2172 208 50 6 chr15 54531859 54532360 -46848161 - L1MC3 LINE L1 -6 7779 7257 427 265 65 125 chr15 54533217 54533729 -46846792 + L2 LINE L2 2789 3267 -5 1683 147 55 0 chr15 54533803 54534076 -46846445 - AluJb SINE Alu -24 288 1 1515 170 3 79 chr15 54534623 54534821 -46845700 - AluJo SINE Alu -18 294 127 1869 114 37 47 chr15 54534821 54535118 -46845403 + AluSx SINE Alu 3 296 -16 1515 170 3 79 chr15 54535118 54535237 -46845284 - AluJo SINE Alu -185 127 1 186 320 157 7 chr15 54535252 54535405 -46845116 + L2 LINE L2 2610 2785 -529 485 315 121 24 chr15 54535685 54536015 -46844506 - MLT1J2 LTR MaLR -22 428 67 551 218 9 9 chr15 54536066 54536176 -46844345 - MER81 DNA DNA -1 113 4 2932 91 6 0 chr15 54536902 54537264 -46843257 - THE1B LTR MaLR 0 364 1 410 228 280 21 chr15 54537370 54537559 -46842962 - MIR SINE MIR 0 262 25 592 252 138 44 chr15 54537852 54538396 -46842125 - L1ME4a LINE L1 -17 6104 5510 1198 119 5 30 chr15 54538450 54538651 -46841870 - MER2 DNA MER2_type -149 196 1 194 312 39 0 chr15 54540235 54540312 -46840209 + MIR SINE MIR 29 108 -100 202 298 0 0 chr15 54540631 54540678 -46839843 + L2 LINE L2 3234 3280 -33 241 238 16 0 chr15 54541262 54541325 -46839196 + (CATA)n Simple_repeat Simple_repeat 1 64 0 217 352 9 48 chr15 54543072 54543177 -46837344 - MIR SINE MIR -67 141 41 421 292 211 6 chr15 54543423 54543584 -46836937 - MIR SINE MIR -34 228 35 669 314 230 40 chr15 54543591 54543827 -46836694 - L3 LINE CR1 -206 1371 1181 1038 175 23 0 chr15 54543827 54543998 -46836523 - FAM SINE Alu 0 175 1 669 314 230 40 chr15 54543998 54544196 -46836325 - L3 LINE CR1 -396 1181 1022 183 42 0 0 chr15 54544196 54544220 -46836301 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 669 314 230 40 chr15 54544220 54544605 -46835916 - L3 LINE CR1 -555 1022 395 321 246 108 46 chr15 54544870 54545000 -46835521 - MIR3 SINE MIR -9 199 62 361 248 125 107 chr15 54545773 54546179 -46834342 + L1ME LINE L1 3441 3855 -2291 1279 119 16 103 chr15 54547008 54547260 -46833261 - MER30 DNA MER1_type 0 230 1 9816 205 37 25 chr15 54547944 54551096 -46829425 + L1PA16 LINE L1 2359 5561 -605 1678 146 39 93 chr15 54551096 54551452 -46829069 - MER1B DNA MER1_type 0 337 1 9816 205 37 25 chr15 54551452 54552058 -46828463 + L1PA16 LINE L1 5561 6158 -8 442 314 38 93 chr15 54552060 54552198 -46828323 + L1ME LINE L1 4132 4276 -1870 534 273 17 11 chr15 54552198 54552374 -46828147 - MER5B DNA MER1_type -1 177 1 442 314 38 93 chr15 54552374 54552584 -46827937 + L1ME LINE L1 4276 4456 -1690 571 27 0 0 chr15 54552584 54552659 -46827862 + L1PA2 LINE L1 6081 6155 0 442 314 38 93 chr15 54552659 54552729 -46827792 + L1ME LINE L1 4456 4528 -1618 507 296 181 31 chr15 54552905 54553392 -46827129 + L1ME LINE L1 4763 5322 -824 248 295 146 16 chr15 54553410 54553732 -46826789 + L1ME LINE L1 5366 5729 -392 1994 147 0 13 chr15 54553921 54554235 -46826286 - AluSq SINE Alu 0 313 4 29 28 0 0 chr15 54554240 54554276 -46826245 + AT_rich Low_complexity Low_complexity 1 36 0 1933 156 0 3 chr15 54554491 54554792 -46825729 + AluSx SINE Alu 1 300 -12 306 315 7 14 chr15 54554848 54554991 -46825530 + L1ME LINE L1 5480 5621 -500 47 44 0 0 chr15 54555346 54555414 -46825107 + AT_rich Low_complexity Low_complexity 1 68 0 284 327 47 9 chr15 54555570 54555677 -46824844 - MIR SINE MIR -62 146 36 394 204 43 0 chr15 54555839 54555932 -46824589 - MER94 DNA DNA -36 98 2 1080 233 41 72 chr15 54557064 54557275 -46823246 + Charlie4a DNA MER1_type 38 254 -1707 5375 116 6 19 chr15 54557275 54558514 -46822007 - L1PA15 LINE L1 -19 6146 4936 1080 233 41 72 chr15 54558514 54558788 -46821733 + Charlie4a DNA MER1_type 254 508 0 377 313 101 1 chr15 54559396 54559560 -46820961 - MIR SINE MIR -60 202 23 10980 156 66 16 chr15 54559612 54561729 -46818792 - Tigger7 DNA MER2_type 0 2487 265 204 67 0 0 chr15 54561884 54561914 -46818607 + (CCTG)n Simple_repeat Simple_repeat 2 31 0 1842 192 11 8 chr15 54562032 54562397 -46818124 - MER47A DNA MER2_type 0 366 1 274 237 68 0 chr15 54562479 54562538 -46817983 + L2 LINE L2 3169 3231 -41 2334 71 0 0 chr15 54562732 54563015 -46817506 + AluY SINE Alu 19 301 -10 1538 224 24 22 chr15 54563682 54564053 -46816468 - MLT1A2 LTR MaLR 0 374 3 13277 65 6 1 chr15 54564700 54566625 -46813896 - L1P2 LINE L1 -677 5477 3547 226 333 30 10 chr15 54567007 54567106 -46813415 - MIR3 SINE MIR 0 208 108 187 234 26 13 chr15 54567650 54567727 -46812794 + CT-rich Low_complexity Low_complexity 3 80 0 2934 132 78 15 chr15 54568154 54569405 -46811116 - SVA Other Other -518 868 307 306 315 7 14 chr15 54569480 54569623 -46810898 + L1ME LINE L1 5480 5621 -500 47 44 0 0 chr15 54569978 54570046 -46810475 + AT_rich Low_complexity Low_complexity 1 68 0 284 327 47 9 chr15 54570202 54570309 -46810212 - MIR SINE MIR -62 146 36 357 183 54 11 chr15 54570470 54570563 -46809958 - MER94 DNA DNA -36 98 2 545 261 10 36 chr15 54571695 54571890 -46808631 + Charlie4 DNA MER1_type 38 227 -1734 3590 142 17 57 chr15 54571906 54572603 -46807918 - L1PA15 LINE L1 -19 6146 5478 2951 167 57 53 chr15 54572934 54573652 -46806869 - MER45B DNA AcHobo -95 945 225 521 233 17 0 chr15 54573649 54573769 -46806752 - MER45B DNA AcHobo -917 123 2 * 818 212 113 64 chr15 54575361 54575706 -46804815 - LTR45B LTR ERV1 0 489 128 245 191 0 0 chr15 54575744 54575791 -46804730 - LTR45B LTR ERV1 -361 128 82 917 221 18 36 chr15 54575942 54576164 -46804357 + MER20 DNA MER1_type 1 218 -1 1753 186 40 8 chr15 54576687 54577041 -46803480 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr15 54577635 54577656 -46802865 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr15 54578385 54578410 -46802111 + (T)n Simple_repeat Simple_repeat 1 25 0 1348 247 38 0 chr15 54579236 54579580 -46800941 + MLT1A1 LTR MaLR 1 357 -8 415 173 13 0 chr15 54579644 54579719 -46800802 + MADE1 DNA Mariner 1 76 -4 430 300 14 0 chr15 54579786 54579926 -46800595 - MIR SINE MIR -117 145 4 384 213 93 9 chr15 54580391 54580499 -46800022 - MIR SINE MIR -116 146 30 192 240 60 0 chr15 54582515 54582565 -46797956 + L2 LINE L2 3214 3266 -6 22 0 0 0 chr15 54582576 54582598 -46797923 + AT_rich Low_complexity Low_complexity 1 22 0 185 136 0 23 chr15 54583398 54583442 -46797079 + (GAAAA)n Simple_repeat Simple_repeat 3 45 0 21 36 0 0 chr15 54583531 54583559 -46796962 + AT_rich Low_complexity Low_complexity 1 28 0 3870 196 87 16 chr15 54583829 54584798 -46795723 - L1MC4a LINE L1 -174 7634 6597 375 305 35 35 chr15 54585241 54585382 -46795139 - MIR SINE MIR -70 192 52 230 319 60 0 chr15 54587364 54587480 -46793041 + MER117 DNA MER1_type 73 195 -2 195 318 47 16 chr15 54588958 54589087 -46791434 + L2 LINE L2 3180 3312 -1 908 229 5 29 chr15 54589210 54589415 -46791106 + MER3 DNA MER1_type 10 209 0 793 239 33 5 chr15 54589484 54589668 -46790853 + MER5A DNA MER1_type 1 189 0 209 288 42 76 chr15 54589814 54589932 -46790589 - MER5B DNA MER1_type -63 115 2 413 230 178 0 chr15 54590180 54590315 -46790206 - MER5C DNA MER1_type -3 321 163 260 228 43 65 chr15 54590349 54590441 -46790080 - L1MC4 LINE L1 -31 8011 7922 216 86 0 0 chr15 54590478 54590513 -46790008 + (T)n Simple_repeat Simple_repeat 1 35 0 225 0 0 0 chr15 54590593 54590618 -46789903 + (T)n Simple_repeat Simple_repeat 1 25 0 803 153 0 8 chr15 54590620 54590744 -46789777 - AluSq/x SINE Alu -190 123 1 631 230 30 18 chr15 54590768 54590933 -46789588 - L1ME2 LINE L1 0 6164 5998 506 215 92 25 chr15 54590951 54591114 -46789407 - MER5C DNA MER1_type -144 180 7 347 314 0 0 chr15 54591960 54592046 -46788475 - MIR SINE MIR -120 142 57 2355 93 185 129 chr15 54592048 54592584 -46787937 - LTR12 LTR ERV1 -148 566 1 701 179 179 31 chr15 54593157 54593353 -46787168 + L1MDa LINE L1 1958 2182 -4358 6536 254 60 21 chr15 54593377 54595479 -46785042 + L1MDa LINE L1 2587 4768 -1772 304 303 103 18 chr15 54595500 54595665 -46784856 + MIR3 SINE MIR 24 202 -6 596 240 74 87 chr15 54595686 54596052 -46784469 - L1ME4a LINE L1 -5 6116 5756 214 333 0 0 chr15 54597054 54597116 -46783405 + MIR SINE MIR 42 103 -105 199 340 0 0 chr15 54597118 54597168 -46783353 + MIR SINE MIR 82 131 -131 300 27 0 0 chr15 54597391 54597428 -46783093 + (TG)n Simple_repeat Simple_repeat 1 37 0 2495 160 44 27 chr15 54597483 54597964 -46782557 + L1MB7 LINE L1 5695 6183 -1 417 302 41 29 chr15 54597966 54598211 -46782310 + L1M4 LINE L1 3349 3596 -2550 10510 193 47 22 chr15 54598217 54599721 -46780800 + L1M3f LINE L1 11 1477 -4851 2134 141 0 3 chr15 54599721 54600034 -46780487 + AluSq SINE Alu 1 312 -1 10510 193 47 22 chr15 54600034 54603122 -46777399 + L1M3f LINE L1 1477 4685 -1643 462 276 119 63 chr15 54603225 54603653 -46776868 + L1M4 LINE L1 3597 4048 -2098 352 345 30 18 chr15 54604215 54604380 -46776141 - MIR SINE MIR -79 183 17 304 293 176 14 chr15 54604882 54605104 -46775417 - L1M4 LINE L1 -1836 4310 4053 274 292 0 0 chr15 54605215 54605280 -46775241 + MER45 DNA AcHobo 1517 1581 0 1718 245 122 20 chr15 54606433 54607033 -46773488 - L1ME3A LINE L1 -6 6164 5504 188 230 130 70 chr15 54608124 54608224 -46772297 - L2 LINE L2 -1 3271 3166 289 314 35 0 chr15 54608295 54608381 -46772140 + MER94 DNA DNA 5 93 -41 184 186 0 70 chr15 54609213 54609256 -46771265 + L2 LINE L2 3233 3272 0 1014 305 47 19 chr15 54609550 54609911 -46770610 + MLT1K LTR MaLR 4 374 -214 189 224 310 0 chr15 54610374 54610432 -46770089 + MER5C DNA MER1_type 1 76 -248 198 0 0 0 chr15 54610488 54610510 -46770011 + (CAA)n Simple_repeat Simple_repeat 3 24 0 211 327 0 0 chr15 54610564 54610619 -46769902 - MER5C DNA MER1_type -269 55 1 770 201 119 0 chr15 54610742 54610901 -46769620 - MER5B DNA MER1_type 0 178 1 393 337 67 17 chr15 54610916 54611094 -46769427 - MER5A DNA MER1_type -1 188 2 337 347 25 0 chr15 54612215 54612336 -46768185 - MER94 DNA DNA -10 124 1 2277 98 0 10 chr15 54612370 54612667 -46767854 + AluSg SINE Alu 3 296 -14 2374 93 0 6 chr15 54612715 54613026 -46767495 + AluSc SINE Alu 1 309 0 457 295 28 83 chr15 54613719 54613936 -46766585 - MIR SINE MIR -5 257 53 1897 287 202 16 chr15 54614023 54614911 -46765610 + L2 LINE L2 1711 2763 -551 1785 236 67 50 chr15 54614914 54615503 -46765018 + MLT1G LTR MaLR 2 590 0 704 306 51 0 chr15 54615509 54615739 -46764782 + L2 LINE L2 2770 3010 -303 2204 233 61 8 chr15 54615744 54616251 -46764270 + MLT1F LTR MaLR 1 534 -8 532 289 62 40 chr15 54616283 54616508 -46764013 + L2 LINE L2 3077 3306 -7 554 252 107 0 chr15 54616513 54616672 -46763849 + MER117 DNA MER1_type 22 197 0 233 321 44 31 chr15 54616769 54616928 -46763593 - L3b LINE CR1 -164 1419 1259 313 286 89 0 chr15 54617190 54617302 -46763219 - L2 LINE L2 0 3313 3192 275 268 110 67 chr15 54618020 54618184 -46762337 - MIR SINE MIR -51 211 41 268 319 62 18 chr15 54619145 54619258 -46761263 - MIR SINE MIR -98 164 47 1031 161 39 0 chr15 54619463 54619643 -46760878 + MER53 DNA DNA 2 188 -1 256 219 31 0 chr15 54620012 54620076 -46760445 + C-rich Low_complexity Low_complexity 3 68 0 2129 160 42 34 chr15 54620474 54621021 -46759500 - MLT2A2 LTR ERVL 0 554 1 228 212 257 35 chr15 54621187 54621300 -46759221 + Charlie8 DNA MER1_type 53 190 -2227 322 284 76 40 chr15 54622310 54622469 -46758052 - MIR3 SINE MIR -1 207 43 258 290 30 20 chr15 54622698 54622798 -46757723 + L2 LINE L2 3193 3293 -20 230 256 44 22 chr15 54622798 54622888 -46757633 - MER94 DNA DNA 0 134 43 25 31 0 0 chr15 54622899 54622931 -46757590 + AT_rich Low_complexity Low_complexity 1 32 0 278 215 86 11 chr15 54622932 54623025 -46757496 + L1ME4a LINE L1 6019 6118 -3 16851 80 9 4 chr15 54623030 54626005 -46754516 - L1PA7 LINE L1 -1 6153 3167 1746 180 7 10 chr15 54626163 54626457 -46754064 + AluJo SINE Alu 3 295 -17 346 251 104 71 chr15 54628016 54628199 -46752322 - MIR3 SINE MIR -6 202 14 1243 237 10 30 chr15 54629255 54629683 -46750838 - AluJb SINE Alu 0 423 2 180 254 91 18 chr15 54630282 54630337 -46750184 - L3b LINE CR1 -22 1561 1503 21 0 0 0 chr15 54630450 54630471 -46750050 + AT_rich Low_complexity Low_complexity 1 21 0 1829 152 0 4 chr15 54630948 54631224 -46749297 + AluJb SINE Alu 1 275 -37 822 241 66 19 chr15 54631253 54631465 -46749056 + MIR SINE MIR 24 245 -17 255 309 45 27 chr15 54631459 54631569 -46748952 - MIR SINE MIR -62 146 35 * 249 292 146 0 chr15 54633372 54633468 -46747053 - MIR SINE MIR -70 192 83 201 320 39 39 chr15 54633529 54633657 -46746864 + MIR SINE MIR 71 198 -64 1632 213 97 18 chr15 54633891 54634347 -46746174 + L1ME1 LINE L1 5675 6166 0 257 226 262 0 chr15 54634352 54634436 -46746085 - MIR SINE MIR -147 115 10 524 289 31 6 chr15 54634543 54634702 -46745819 + MLT1I LTR MaLR 245 407 -2 1811 124 88 11 chr15 54635651 54635925 -46744596 - AluSq SINE Alu -18 295 1 230 267 40 13 chr15 54636415 54636490 -46744031 - MIR SINE MIR -109 153 77 475 252 84 7 chr15 54636695 54636838 -46743683 - MIR3 SINE MIR -39 169 16 209 308 115 32 chr15 54636930 54637086 -46743435 - MIR3 SINE MIR -7 201 33 24 32 0 0 chr15 54637971 54638002 -46742519 + AT_rich Low_complexity Low_complexity 1 31 0 24 77 0 0 chr15 54638030 54638082 -46742439 + AT_rich Low_complexity Low_complexity 1 52 0 327 49 0 0 chr15 54639158 54639199 -46741322 + (TC)n Simple_repeat Simple_repeat 1 41 0 223 321 114 8 chr15 54639554 54639685 -46740836 + MIR3 SINE MIR 16 160 -48 249 230 0 46 chr15 54640768 54640855 -46739666 + G-rich Low_complexity Low_complexity 5 87 0 2106 125 0 0 chr15 54641048 54641374 -46739147 + AluSc SINE Alu 1 326 0 527 359 65 3 chr15 54642075 54642446 -46738075 + L2 LINE L2 2553 2946 -368 330 288 97 59 chr15 54643681 54644141 -46736380 - L2 LINE L2 -33 3280 2733 191 296 121 38 chr15 54644172 54644543 -46735978 - L2 LINE L2 -558 2756 2355 278 290 150 0 chr15 54644664 54644764 -46735757 + L2 LINE L2 3154 3268 -4 213 163 0 23 chr15 54645103 54645146 -46735375 + T-rich Low_complexity Low_complexity 2 43 0 620 288 75 0 chr15 54646288 54646500 -46734021 - MIR SINE MIR -25 237 10 2293 110 0 0 chr15 54647958 54648268 -46732253 - AluY SINE Alu -1 310 1 383 313 81 0 chr15 54648511 54648671 -46731850 - MIR SINE MIR -3 259 87 198 351 73 36 chr15 54649520 54649685 -46730836 + L2 LINE L2 2866 3036 -236 21 57 0 0 chr15 54650521 54650556 -46729965 + AT_rich Low_complexity Low_complexity 1 35 0 308 301 59 54 chr15 54650754 54650940 -46729581 + MER5A DNA MER1_type 1 187 -2 12906 95 10 1 chr15 54651724 54654314 -46726207 - L1PA7 LINE L1 -3 6151 3547 197 333 30 10 chr15 54654696 54654795 -46725726 - MIR3 SINE MIR 0 208 108 187 234 26 13 chr15 54655339 54655416 -46725105 + CT-rich Low_complexity Low_complexity 3 80 0 339 287 41 8 chr15 54657423 54657545 -46722976 + MIR SINE MIR 91 216 -46 291 167 19 0 chr15 54657856 54657910 -46722611 + MIR SINE MIR 90 144 -64 620 275 52 10 chr15 54658013 54658206 -46722315 - MIR SINE MIR -48 214 14 4303 110 26 72 chr15 54658410 54659174 -46721347 - L1PA14 LINE L1 -2 7597 6869 313 93 0 0 chr15 54659180 54659223 -46721298 + L1 LINE L1 4700 4742 -1404 17392 196 12 41 chr15 54659249 54661203 -46719318 - L1PA14 LINE L1 -1013 6571 4796 2051 161 119 8 chr15 54661203 54661588 -46718933 - MSTA LTR MaLR 0 428 1 17392 196 12 41 chr15 54661588 54663676 -46716845 - L1PA14 LINE L1 -2788 4796 2648 5981 147 4 8 chr15 54663672 54664595 -46715926 - L1PA14 LINE L1 -6661 920 1 * 439 241 78 36 chr15 54664752 54665013 -46715508 - L1M2 LINE L1 -704 5447 5209 333 246 70 42 chr15 54665088 54665230 -46715291 - MIR SINE MIR -104 158 13 238 296 96 8 chr15 54666501 54666626 -46713895 + L2 LINE L2 3137 3272 0 220 309 82 0 chr15 54666972 54667069 -46713452 - MIR SINE MIR -73 135 31 268 244 109 50 chr15 54668231 54668350 -46712171 + MER5A DNA MER1_type 63 188 -1 237 349 19 0 chr15 54668384 54668490 -46712031 - MIR SINE MIR -58 150 43 259 229 267 8 chr15 54668792 54668923 -46711598 + MIR3 SINE MIR 11 175 -33 2147 162 67 8 chr15 54668927 54669298 -46711223 + MSTD LTR MaLR 4 396 0 1623 150 56 97 chr15 54669899 54670313 -46710208 - L1MB3 LINE L1 -11 6172 5776 224 30 30 0 chr15 54670521 54670554 -46709967 + (TG)n Simple_repeat Simple_repeat 2 35 0 413 137 368 0 chr15 54670716 54670811 -46709710 - L1MB3 LINE L1 -390 5793 5664 517 260 65 8 chr15 54672366 54672554 -46707967 - MIR SINE MIR -12 250 57 218 256 11 67 chr15 54674096 54674186 -46706335 - MIR SINE MIR -75 187 103 223 286 78 13 chr15 54674452 54674529 -46705992 + L2 LINE L2 3151 3232 -40 267 133 0 0 chr15 54674543 54674588 -46705933 + (GGGA)n Simple_repeat Simple_repeat 2 46 0 234 261 43 43 chr15 54675626 54675741 -46704780 + L2 LINE L2 2269 2383 -931 190 114 23 23 chr15 54679927 54679971 -46700550 + GA-rich Low_complexity Low_complexity 3 46 0 195 279 36 36 chr15 54680877 54680988 -46699533 + MIR SINE MIR 21 131 -77 261 300 0 67 chr15 54680990 54681110 -46699411 - MER5A DNA MER1_type 0 189 78 364 230 12 12 chr15 54681781 54681874 -46698647 + MER5A DNA MER1_type 21 124 -65 250 268 36 27 chr15 54681782 54681894 -46698627 - MER5A DNA MER1_type -21 168 56 * 788 209 102 25 chr15 54683293 54683528 -46696993 - MIR SINE MIR -6 256 4 331 192 0 27 chr15 54686028 54686101 -46694420 + MER116 DNA Mariner 10 80 0 2223 77 30 24 chr15 54687078 54687376 -46693145 - AluY SINE Alu -11 300 1 267 262 83 0 chr15 54687948 54688032 -46692489 + MIR SINE MIR 56 146 -62 330 272 178 26 chr15 54688051 54688242 -46692279 - MER102a DNA MER1_type 0 330 111 236 369 29 0 chr15 54688756 54688859 -46691662 + L3b LINE CR1 1410 1515 -68 677 295 34 24 chr15 54690211 54690622 -46689899 + LTR16A LTR ERVL 3 450 0 673 270 26 52 chr15 54690868 54691101 -46689420 + MIR SINE MIR 17 243 -19 423 276 163 15 chr15 54691964 54692167 -46688354 - MIR SINE MIR -6 256 24 259 224 0 0 chr15 54692903 54692961 -46687560 - L2 LINE L2 -2 3311 3254 396 217 75 19 chr15 54693635 54693741 -46686780 + MIR SINE MIR 36 147 -61 22 0 0 0 chr15 54694369 54694391 -46686130 + AT_rich Low_complexity Low_complexity 1 22 0 361 326 105 48 chr15 54694819 54695132 -46685389 + L2 LINE L2 2821 3151 -121 1339 181 46 39 chr15 54695173 54695455 -46685066 - AluJo SINE Alu -26 286 3 1273 200 11 31 chr15 54695503 54695763 -46684758 - AluJo SINE Alu -57 255 1 401 275 106 55 chr15 54695773 54695991 -46684530 - MIR SINE MIR -14 248 20 22 0 0 0 chr15 54696976 54696998 -46683523 + AT_rich Low_complexity Low_complexity 1 22 0 1949 214 87 28 chr15 54697791 54697893 -46682628 + L1ME1 LINE L1 4740 4835 -1331 2394 76 26 0 chr15 54697893 54698195 -46682326 + AluY SINE Alu 1 310 -1 1949 214 87 28 chr15 54698195 54699060 -46681461 + L1ME1 LINE L1 4835 5772 -394 1262 165 8 17 chr15 54699121 54699358 -46681163 - MER46A DNA MER2_type 0 236 2 1106 220 47 45 chr15 54699359 54699741 -46680780 + L1ME1 LINE L1 5779 6161 -5 9625 105 54 2 chr15 54700024 54702296 -46678225 - L1PA7 LINE L1 -4 6150 3775 1873 126 8 0 chr15 54702489 54702752 -46677769 + AluSx SINE Alu 1 265 -47 2728 91 220 8 chr15 54704395 54704909 -46675612 - L1PA7 LINE L1 -2334 3812 3190 420 37 0 0 chr15 54705024 54705078 -46675443 + (CA)n Simple_repeat Simple_repeat 2 55 0 397 310 122 22 chr15 54705214 54705443 -46675078 - MIR SINE MIR -8 254 3 673 254 41 0 chr15 54705569 54705738 -46674783 - MSTD LTR MaLR -2 394 219 439 223 22 50 chr15 54705782 54705921 -46674600 - MSTD LTR MaLR -257 139 5 320 232 85 0 chr15 54705922 54706004 -46674517 - MIR SINE MIR -74 188 100 485 241 259 0 chr15 54707878 54708048 -46672473 + MIR SINE MIR 47 260 -2 2388 160 54 12 chr15 54708098 54708579 -46671942 - L1MB7 LINE L1 -11 6173 5673 995 177 92 8 chr15 54708579 54708839 -46671682 - L1MB7 LINE L1 -2208 3938 3657 21 36 0 0 chr15 54709632 54709660 -46670861 + AT_rich Low_complexity Low_complexity 1 28 0 335 289 78 14 chr15 54709823 54709965 -46670556 + L1MC/D LINE L1 35 185 -6211 1476 268 111 52 chr15 54710132 54710425 -46670096 + L1MC/D LINE L1 660 934 -5462 1627 147 68 8 chr15 54710425 54710690 -46669831 - AluSx SINE Alu -31 281 1 1476 268 111 52 chr15 54710690 54711334 -46669187 + L1MC/D LINE L1 934 1539 -4857 2037 89 20 26 chr15 54711334 54711636 -46668885 + AluY SINE Alu 1 300 -11 1476 268 111 52 chr15 54711636 54712209 -46668312 + L1MC/D LINE L1 1539 2260 -4136 725 179 172 26 chr15 54712200 54712468 -46668053 + L1ME1 LINE L1 5864 6177 -1 * 1843 113 71 4 chr15 54712624 54712890 -46667631 + AluSg SINE Alu 2 285 -25 255 269 19 28 chr15 54713030 54713138 -46667383 + L1MC/D LINE L1 4581 4687 -1528 442 311 80 69 chr15 54713201 54713331 -46667190 + L1MC/D LINE L1 4767 4894 -1321 300 82 262 0 chr15 54713331 54713392 -46667129 + MADE1 DNA Mariner 2 78 -2 442 311 80 69 chr15 54713392 54713611 -46666910 + L1MC/D LINE L1 4894 5120 -1095 885 20 0 0 chr15 54713660 54713758 -46666763 + AluYb8 SINE Alu 213 310 -8 204 217 0 0 chr15 54714023 54714069 -46666452 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 230 258 71 45 chr15 54714110 54714265 -46666256 + L1MC/D LINE L1 5758 5916 -1961 2259 106 3 3 chr15 54714329 54714631 -46665890 + AluSq SINE Alu 1 302 -11 21 36 0 0 chr15 54715168 54715196 -46665325 + AT_rich Low_complexity Low_complexity 1 28 0 1072 169 166 0 chr15 54715260 54715538 -46664983 + MER33 DNA MER1_type 1 324 0 1137 237 72 9 chr15 54715692 54716013 -46664508 + MER58B DNA MER1_type 1 341 0 206 121 0 0 chr15 54718953 54718986 -46661535 + (A)n Simple_repeat Simple_repeat 1 33 0 22 70 0 0 chr15 54719168 54719211 -46661310 + AT_rich Low_complexity Low_complexity 1 43 0 26 0 0 0 chr15 54719993 54720019 -46660502 + AT_rich Low_complexity Low_complexity 1 26 0 207 69 0 0 chr15 54720034 54720063 -46660458 + (TC)n Simple_repeat Simple_repeat 1 29 0 377 284 168 4 chr15 54720330 54720811 -46659710 - L1MC/D LINE L1 -805 5341 5161 8936 123 32 30 chr15 54721698 54723943 -46656578 + L1PA10 LINE L1 3912 6157 -11 236 235 49 12 chr15 54724170 54724251 -46656270 + MER113 DNA MER1_type? 32 115 -406 610 223 130 0 chr15 54724435 54724595 -46655926 - MER5A DNA MER1_type -2 187 4 22 70 0 0 chr15 54724746 54724789 -46655732 + AT_rich Low_complexity Low_complexity 1 43 0 353 295 127 36 chr15 54724839 54725005 -46655516 - MIR SINE MIR -66 196 16 23 33 0 0 chr15 54726113 54726143 -46654378 + AT_rich Low_complexity Low_complexity 1 30 0 189 200 156 0 chr15 54726487 54726532 -46653989 - L3b LINE CR1 -39 1544 1493 352 349 71 8 chr15 54726805 54726931 -46653590 + MIR3 SINE MIR 61 194 -14 1638 196 51 24 chr15 54728064 54728430 -46652091 - L1PB4 LINE L1 -7 6149 5794 189 74 0 0 chr15 54728430 54728457 -46652064 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 204 40 0 0 chr15 54728456 54728481 -46652040 + (TA)n Simple_repeat Simple_repeat 1 25 0 1638 196 51 24 chr15 54728457 54728523 -46651998 - L1PB4 LINE L1 -362 5794 5730 780 212 33 0 chr15 54728539 54728723 -46651798 + L1 LINE L1 4408 4597 -1549 371 299 157 70 chr15 54728867 54729198 -46651323 + L2 LINE L2 2913 3272 0 3089 187 7 64 chr15 54729629 54729765 -46650756 - MER82 DNA MER2_type 0 653 511 4612 101 25 18 chr15 54729765 54730498 -46650023 - L1PB2 LINE L1 0 6151 5414 3089 187 7 64 chr15 54730498 54731051 -46649470 - MER82 DNA MER2_type -142 511 3 368 306 18 6 chr15 54731169 54731309 -46649212 + MIR SINE MIR 14 151 -63 334 210 0 0 chr15 54733004 54733066 -46647455 + MER5A DNA MER1_type 48 109 -80 231 233 0 50 chr15 54733284 54733344 -46647177 + MIR SINE MIR 195 251 -11 320 299 14 76 chr15 54733462 54733606 -46646915 + MIR SINE MIR 46 180 -82 421 202 62 0 chr15 54733861 54733990 -46646531 - L1ME4a LINE L1 -10 6111 5975 1710 93 0 0 chr15 54737306 54737551 -46642970 + AluSg/x SINE Alu 71 315 0 196 356 69 11 chr15 54739576 54739663 -46640858 - MIR3 SINE MIR -111 97 6 1785 180 92 48 chr15 54739879 54739904 -46640617 + Looper DNA T2_type 10 32 -1526 2182 97 20 10 chr15 54739904 54740204 -46640317 - AluSx SINE Alu -9 303 1 1785 180 92 48 chr15 54740204 54740701 -46639820 + Looper DNA T2_type 32 555 -1003 238 211 35 0 chr15 54791471 54791528 -46588993 + MER103 DNA DNA 65 123 -43 1708 93 0 0 chr15 54792500 54792745 -46587776 + AluSg/x SINE Alu 71 315 0 196 356 69 11 chr15 54794770 54794857 -46585664 - MIR3 SINE MIR -111 97 6 6389 174 71 22 chr15 54795073 54795098 -46585423 + Looper DNA T2_type 10 32 -1526 2165 97 20 10 chr15 54795098 54795398 -46585123 - AluSx SINE Alu -9 303 1 6389 174 71 22 chr15 54795398 54796842 -46583679 + Looper DNA T2_type 32 1552 -6 23 54 0 0 chr15 54796843 54796880 -46583641 + AT_rich Low_complexity Low_complexity 1 37 0 4223 222 27 24 chr15 54797035 54798113 -46582408 + L1MC4a LINE L1 6728 7808 0 183 232 161 0 chr15 54798439 54798495 -46582026 + MIR SINE MIR 82 146 -116 24 0 0 0 chr15 54798767 54798791 -46581730 + AT_rich Low_complexity Low_complexity 1 24 0 3451 102 34 4 chr15 54798795 54799323 -46581198 - L1PA10 LINE L1 -15 6153 5610 573 300 96 13 chr15 54799777 54800174 -46580347 - L1M4 LINE L1 -3568 2578 2149 9678 227 41 37 chr15 54800190 54802754 -46577767 + L1M2 LINE L1 15 2588 -4261 6892 186 58 21 chr15 54802902 54802988 -46577533 + L1M2 LINE L1 2525 2606 -4242 1854 137 7 14 chr15 54802988 54803281 -46577240 + AluSp SINE Alu 1 291 -22 6892 186 58 21 chr15 54803281 54804816 -46575705 + L1M2 LINE L1 2606 4326 -2522 2268 184 31 2 chr15 54804816 54805230 -46575291 - MSTB LTR MaLR 0 426 1 6892 186 58 21 chr15 54805230 54805562 -46574959 + L1M2 LINE L1 4326 4644 -2204 35077 94 18 12 chr15 54805580 54811672 -46568849 + L1PA4 LINE L1 11 6129 -26 7089 231 53 56 chr15 54811872 54814170 -46566351 - L1M4 LINE L1 -1198 4948 2659 514 240 156 16 chr15 54814308 54814558 -46565963 + L1M2 LINE L1 4786 5070 -1778 209 204 41 0 chr15 54814562 54814611 -46565910 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 23 33 0 0 chr15 54814680 54814710 -46565811 + AT_rich Low_complexity Low_complexity 1 30 0 213 225 0 0 chr15 54816391 54816431 -46564090 + CT-rich Low_complexity Low_complexity 3 42 0 187 281 70 0 chr15 54816434 54816491 -46564030 - L2 LINE L2 -6 3266 3206 588 251 78 36 chr15 54817999 54818218 -46562303 - MIR SINE MIR 0 262 35 182 344 16 62 chr15 54818289 54818417 -46562104 + L2 LINE L2 2739 2860 -454 1900 174 0 0 chr15 54818818 54819123 -46561398 - MLT1A1 LTR MaLR -3 362 58 1252 139 58 43 chr15 54819128 54819386 -46561135 - Tigger7 DNA MER2_type -1 2486 2225 312 115 0 19 chr15 54819431 54819483 -46561038 - MLT1A1 LTR MaLR -312 53 3 364 382 92 24 chr15 54819524 54819862 -46560659 + L2 LINE L2 2897 3257 -15 233 316 174 0 chr15 54820461 54820559 -46559962 + MIR3 SINE MIR 48 162 -46 383 324 77 6 chr15 54820562 54820744 -46559777 - MER117 DNA MER1_type -1 196 2 5832 78 82 1 chr15 54821760 54822593 -46557928 + L1PA7 LINE L1 5254 6153 -1 385 313 37 11 chr15 54823280 54823465 -46557056 + MIR SINE MIR 37 226 -36 315 155 113 82 chr15 54825607 54825618 -46554903 - L1MA10 LINE L1 -58 6276 6266 1192 194 58 58 chr15 54825618 54825963 -46554558 - L1ME1 LINE L1 -61 6105 5761 423 252 119 7 chr15 54826055 54826206 -46554315 + MIR SINE MIR 74 241 -21 503 229 86 6 chr15 54827109 54827284 -46553237 + MER53 DNA DNA 1 189 0 22 0 0 0 chr15 54828115 54828137 -46552384 + AT_rich Low_complexity Low_complexity 1 22 0 205 189 0 0 chr15 54828152 54828189 -46552332 + A-rich Low_complexity Low_complexity 5 41 0 672 108 0 0 chr15 54829215 54829317 -46551204 - AluSg/x SINE Alu -4 308 207 210 286 10 51 chr15 54829410 54829508 -46551013 - L3 LINE CR1 -868 709 616 * 255 211 70 14 chr15 54829485 54829556 -46550965 - MIR3 SINE MIR -133 75 1 399 319 43 32 chr15 54831950 54832135 -46548386 + MIR SINE MIR 54 240 -22 198 346 25 25 chr15 54832159 54832240 -46548281 - L2 LINE L2 -4 3268 3188 1142 271 41 74 chr15 54833255 54833839 -46546682 + L1ME3A LINE L1 5365 5929 -241 184 371 72 0 chr15 54834256 54834353 -46546168 + L2 LINE L2 3169 3272 0 49 18 0 0 chr15 54834416 54834472 -46546049 + AT_rich Low_complexity Low_complexity 1 56 0 34 42 0 0 chr15 54835029 54835077 -46545444 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr15 54836351 54836379 -46544142 + AT_rich Low_complexity Low_complexity 1 28 0 1998 130 11 3 chr15 54836429 54836714 -46543807 - AluSq SINE Alu -26 287 1 233 279 76 13 chr15 54836852 54836931 -46543590 - MIR SINE MIR -71 191 108 207 0 0 0 chr15 54836957 54836980 -46543541 + (T)n Simple_repeat Simple_repeat 1 23 0 591 232 197 0 chr15 54837153 54837295 -46543226 - MER58A DNA MER1_type -54 170 1 213 65 0 0 chr15 54838089 54838120 -46542401 + (A)n Simple_repeat Simple_repeat 1 31 0 496 123 0 12 chr15 54842792 54842873 -46537648 - MADE1 DNA Mariner 0 80 1 278 159 0 0 chr15 54843352 54843396 -46537125 - L2 LINE L2 -8 3305 3262 418 243 83 35 chr15 54844043 54844212 -46536309 - MER5B DNA MER1_type 0 178 2 192 342 90 18 chr15 54846853 54846964 -46533557 + L2 LINE L2 2605 2723 -591 208 274 55 14 chr15 54847032 54847105 -46533416 + MER5A DNA MER1_type 69 144 -45 22 35 0 0 chr15 54847651 54847680 -46532841 + AT_rich Low_complexity Low_complexity 1 29 0 503 242 7 27 chr15 54847716 54847865 -46532656 - MLT1G LTR MaLR -7 583 438 261 226 140 11 chr15 54847873 54847966 -46532555 - MLT1G1 LTR MaLR -490 105 1 374 331 81 107 chr15 54847983 54848442 -46532079 + L2 LINE L2 2825 3271 -1 4219 83 0 2 chr15 54849211 54849765 -46530756 - MER41A LTR ERV1 -1 553 1 268 357 103 6 chr15 54850141 54850357 -46530164 - MIR SINE MIR -13 249 16 618 305 13 0 chr15 54850615 54850769 -46529752 + MIR SINE MIR 10 165 -97 189 107 0 0 chr15 54850845 54850873 -46529648 + (TTA)n Simple_repeat Simple_repeat 1 28 0 2187 125 0 0 chr15 54850915 54851218 -46529303 + AluSx SINE Alu 1 303 -9 218 184 0 0 chr15 54851272 54851310 -46529211 + (TATG)n Simple_repeat Simple_repeat 2 39 0 1801 165 15 69 chr15 54851445 54851852 -46528669 - MLT1B LTR MaLR 0 390 6 1394 229 20 7 chr15 54852197 54852490 -46528031 - AluJo SINE Alu -15 297 1 547 321 42 46 chr15 54853698 54853935 -46526586 + MIR SINE MIR 14 249 -13 810 258 72 46 chr15 54853998 54854123 -46526398 - L1MC5 LINE L1 -51 7910 7790 2264 88 27 0 chr15 54854123 54854418 -46526103 - AluSg SINE Alu -7 303 1 810 258 72 46 chr15 54854418 54854919 -46525602 - L1MC5 LINE L1 -171 7790 7268 216 333 88 35 chr15 54855457 54855571 -46524950 - L2 LINE L2 -15 3257 3138 1990 168 69 11 chr15 54855997 54856431 -46524090 + L1MB8 LINE L1 5718 6176 -2 245 271 24 12 chr15 54856493 54856578 -46523943 - L2 LINE L2 -1347 1967 1882 1335 237 63 6 chr15 54856911 54857274 -46523247 + L1MC4 LINE L1 7483 7866 -176 * 2865 196 62 7 chr15 54857259 54858144 -46522377 + L1M1 LINE L1 3356 4282 -3283 260 270 60 10 chr15 54858144 54858244 -46522277 - Tigger3(Golem) DNA MER2_type -232 2797 3 183 271 0 0 chr15 54858337 54858407 -46522114 + (TA)n Simple_repeat Simple_repeat 1 70 0 23 78 0 0 chr15 54858454 54858505 -46522016 + AT_rich Low_complexity Low_complexity 1 51 0 283 273 99 43 chr15 54858508 54858812 -46521709 + L1MEd LINE L1 904 1224 -4895 385 288 81 81 chr15 54858843 54859128 -46521393 + L1MEd LINE L1 2295 2579 -3550 240 280 39 9 chr15 54859188 54859420 -46521101 + L1MEd LINE L1 2768 3006 -3123 343 253 123 13 chr15 54859432 54859661 -46520860 + L1ME LINE L1 4733 4991 -1155 947 293 49 17 chr15 54859816 54860488 -46520033 + L1ME LINE L1 5004 5695 -467 475 299 69 13 chr15 54860489 54860732 -46519789 + MLT1H1 LTR MaLR 1 297 -252 1784 273 88 13 chr15 54860821 54861731 -46518790 + L1MEd LINE L1 3077 4054 -2075 1137 260 103 32 chr15 54861887 54862695 -46517826 + L1MEd LINE L1 4284 5148 -981 367 130 29 0 chr15 54862703 54862772 -46517749 + MER69 DNA AcHobo 2447 2517 -9 2368 86 3 3 chr15 54863180 54863483 -46517038 + AluY SINE Alu 1 303 -8 992 264 34 4 chr15 54863718 54863953 -46516568 - MIR SINE MIR 0 262 21 359 276 105 0 chr15 54863971 54864076 -46516445 - MIR3 SINE MIR -26 182 67 3794 188 60 19 chr15 54864696 54865351 -46515170 - L1MB7 LINE L1 -21 6661 6035 2564 116 3 13 chr15 54865351 54865730 -46514791 - THE1C LTR MaLR 0 375 1 3794 188 60 19 chr15 54865730 54866848 -46513673 - L1MB7 LINE L1 -647 6035 4819 1405 91 0 5 chr15 54866848 54867035 -46513486 - AluY SINE Alu -15 296 111 824 48 10 0 chr15 54867135 54867238 -46513283 - AluY SINE Alu -207 104 1 4481 207 65 21 chr15 54867238 54868043 -46512478 - L1MB7 LINE L1 -1818 4826 3933 262 0 53 0 chr15 54868043 54868081 -46512440 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 4481 207 65 21 chr15 54868081 54868679 -46511842 - L1MB7 LINE L1 -2711 3933 3362 1546 145 52 50 chr15 54868672 54869100 -46511421 - L1PA8A LINE L1 -252 5879 5498 * 647 130 17 9 chr15 54869209 54869324 -46511197 + L1PA16 LINE L1 6043 6158 -8 1567 242 36 13 chr15 54869332 54869857 -46510664 - L1MB7 LINE L1 -3267 3377 2841 1686 190 11 25 chr15 54870362 54870705 -46509816 - MLT1A1 LTR MaLR -27 478 1 1134 207 61 23 chr15 54870705 54871227 -46509294 - L1MB7 LINE L1 -3798 2846 2308 3959 209 40 18 chr15 54871327 54872484 -46508037 - L1MB7 LINE L1 -4771 1875 690 1262 238 38 30 chr15 54872479 54872845 -46507676 - L1MB7 LINE L1 -6168 374 6 * 1476 184 10 35 chr15 54872858 54873166 -46507355 - AluJb SINE Alu 0 301 1 670 293 22 0 chr15 54873853 54874034 -46506487 + MIR SINE MIR 28 212 -50 1057 196 0 16 chr15 54874224 54874413 -46506108 + AluJo SINE Alu 2 187 -125 2071 132 4 0 chr15 54875406 54875712 -46504809 - AluSx SINE Alu 0 307 1 403 354 27 42 chr15 54875959 54876219 -46504302 - L2 LINE L2 -213 3059 2804 1079 291 59 18 chr15 54876659 54877048 -46503473 - LTR16C LTR ERVL 0 491 87 259 366 91 7 chr15 54877261 54877548 -46502973 - L2 LINE L2 -639 2675 2365 1676 184 3 3 chr15 54878060 54878396 -46502125 - AluJb SINE Alu 0 336 1 1834 204 148 0 chr15 54879244 54879684 -46500837 + MLT1D LTR MaLR 1 505 0 204 394 31 19 chr15 54880060 54880220 -46500301 - L2 LINE L2 -803 2511 2350 4473 69 41 0 chr15 54880891 54881472 -46499049 - LTR14B LTR ERVK 0 608 4 269 364 62 6 chr15 54881476 54881638 -46498883 + MIR SINE MIR 34 204 -58 1078 249 43 77 chr15 54881646 54882003 -46498518 + MER74B LTR ERVL 67 404 -218 1788 145 3 40 chr15 54882003 54882306 -46498215 + AluJo SINE Alu 5 296 -16 1078 249 43 77 chr15 54882306 54882439 -46498082 + MER74B LTR ERVL 404 540 -82 318 149 0 40 chr15 54882389 54882463 -46498058 - MER88 LTR ERVL -315 149 79 * 183 80 0 0 chr15 54882665 54882690 -46497831 + (CTAAT)n Simple_repeat Simple_repeat 4 28 0 597 294 15 30 chr15 54882867 54883068 -46497453 - MIR SINE MIR -57 205 8 227 342 103 54 chr15 54884314 54884344 -46496177 + MIR3 SINE MIR 16 43 -165 2169 136 0 3 chr15 54884344 54884653 -46495868 + AluSg SINE Alu 1 308 -2 227 342 103 54 chr15 54884653 54884806 -46495715 + MIR3 SINE MIR 43 208 0 273 292 85 46 chr15 54884976 54885106 -46495415 + L2 LINE L2 3138 3272 0 21 0 0 0 chr15 54885113 54885134 -46495387 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr15 54885226 54885257 -46495264 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr15 54885979 54886005 -46494516 + AT_rich Low_complexity Low_complexity 1 26 0 349 348 17 0 chr15 54887140 54887258 -46493263 + MIR SINE MIR 28 147 -61 2090 133 10 0 chr15 54887302 54887595 -46492926 + AluSx SINE Alu 1 296 -16 1347 38 0 0 chr15 54888267 54888427 -46492094 - L1PA3 LINE L1 0 6155 5996 206 371 34 41 chr15 54888691 54888946 -46491575 - L2 LINE L2 -337 2977 2723 2253 114 0 0 chr15 54888946 54889263 -46491258 + AluSq SINE Alu 1 313 0 206 371 34 41 chr15 54889263 54889298 -46491223 - L2 LINE L2 -591 2723 2689 1074 278 82 41 chr15 54889618 54890452 -46490069 - L1ME3A LINE L1 -221 5949 5086 963 123 130 0 chr15 54891136 54891298 -46489223 + AluSg/x SINE Alu 125 307 -3 303 279 86 14 chr15 54891439 54891579 -46488942 + L1MC4a LINE L1 2264 2413 -3733 1691 226 107 48 chr15 54891697 54891907 -46488614 - MLT2F LTR ERVL -43 620 424 1576 189 54 24 chr15 54891907 54892240 -46488281 - MER61A LTR ERV1 0 343 1 1691 226 107 48 chr15 54892240 54892572 -46487949 - MLT2F LTR ERVL -239 424 46 302 293 17 26 chr15 54892618 54892734 -46487787 + L1MC4a LINE L1 3187 3301 -2845 321 273 87 57 chr15 54892970 54893336 -46487185 + L1MC4a LINE L1 3589 3965 -2181 43876 32 21 1 chr15 54893379 54899409 -46481112 + L1PA2 LINE L1 1 6155 0 235 217 70 78 chr15 54899469 54899584 -46480937 - MLT1L LTR MaLR -416 199 86 2293 95 0 7 chr15 54899601 54899895 -46480626 - AluY SINE Alu -19 292 1 379 333 42 42 chr15 54899985 54900297 -46480224 + L1MC4a LINE L1 4249 4560 -1586 331 323 57 53 chr15 54900473 54900755 -46479766 + L1MC4a LINE L1 4939 5221 -925 225 274 153 13 chr15 54900783 54900940 -46479581 + L1P5 LINE L1 5254 5432 -724 447 224 103 8 chr15 54901031 54901227 -46479294 + L1MC4a LINE L1 5597 5827 -294 2219 105 6 19 chr15 54901360 54901674 -46478847 - AluSx SINE Alu -2 310 1 262 174 43 0 chr15 54902281 54902327 -46478194 + MER5A DNA MER1_type 69 116 -73 315 323 8 31 chr15 54903083 54903210 -46477311 + L2 LINE L2 3189 3312 -1 452 334 135 20 chr15 54903591 54904198 -46476323 + L2 LINE L2 2254 2930 -384 395 316 130 46 chr15 54904232 54904555 -46475966 + L2 LINE L2 2964 3313 0 386 236 188 14 chr15 54911064 54911208 -46469313 - MIR SINE MIR -89 173 5 22 70 0 0 chr15 54911258 54911301 -46469220 + AT_rich Low_complexity Low_complexity 1 43 0 623 290 89 32 chr15 54911425 54911827 -46468694 - L1ME LINE L1 -412 5709 5297 21 0 0 0 chr15 54911842 54911863 -46468658 + AT_rich Low_complexity Low_complexity 1 21 0 370 337 58 0 chr15 54911884 54912142 -46468379 - L1ME LINE L1 -1097 5049 4777 2396 99 0 10 chr15 54912383 54912696 -46467825 + AluSg SINE Alu 1 310 0 1996 121 57 0 chr15 54912870 54913152 -46467369 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr15 54913158 54913179 -46467342 + AT_rich Low_complexity Low_complexity 1 21 0 1240 281 83 41 chr15 54913406 54914420 -46466101 - L1MEd LINE L1 -765 1725 574 270 236 137 15 chr15 54915362 54915496 -46465025 + L1ME LINE L1 5740 5889 -232 267 190 0 0 chr15 54915533 54915591 -46464930 + (CA)n Simple_repeat Simple_repeat 2 59 0 561 164 77 0 chr15 54915891 54915995 -46464526 + MER103 DNA DNA 12 123 -43 510 282 153 5 chr15 54917040 54917256 -46463265 + MIR SINE MIR 15 262 0 376 308 8 0 chr15 54917739 54917856 -46462665 - MER102a DNA MER1_type -27 303 186 22 0 0 0 chr15 54919311 54919333 -46461188 + AT_rich Low_complexity Low_complexity 1 22 0 1031 211 0 0 chr15 54924227 54924407 -46456114 - LTR32 LTR ERVL -120 351 172 542 262 30 91 chr15 54925433 54925696 -46454825 + MIR SINE MIR 16 262 0 257 291 0 0 chr15 54926074 54926129 -46454392 - L2 LINE L2 -4 3268 3214 5860 159 27 21 chr15 54926497 54927576 -46452945 - L1MA4 LINE L1 -1 6299 5212 339 145 0 53 chr15 54927688 54927764 -46452757 + LTR49 LTR ERV1 456 527 -68 808 365 78 9 chr15 54929284 54929706 -46450815 + L3 LINE CR1 1067 1517 -60 1006 269 165 3 chr15 54929801 54930110 -46450411 + MLT1G1 LTR MaLR 237 595 0 268 304 36 9 chr15 54932675 54932787 -46447734 - L1MC4a LINE L1 -1882 5926 5812 203 358 29 44 chr15 54932938 54933075 -46447446 - L2 LINE L2 -5 3267 3133 818 220 136 62 chr15 54933254 54933423 -46447098 - MER102b DNA MER1_type -1096 332 177 573 133 11 0 chr15 54933423 54933513 -46447008 + L1MD1 LINE L1 6151 6241 -1 818 220 136 62 chr15 54933513 54933652 -46446869 - MER102b DNA MER1_type -1251 177 1 280 311 67 50 chr15 54933973 54934153 -46446368 - MIR SINE MIR -31 231 49 320 268 93 60 chr15 54934610 54934793 -46445728 - MIR SINE MIR -28 234 46 2114 122 13 10 chr15 54934841 54935152 -46445369 - AluSx SINE Alu 0 312 1 2048 128 0 30 chr15 54935154 54935458 -46445063 - AluJb SINE Alu -17 295 1 450 253 0 0 chr15 54935706 54935789 -46444732 - AluJb SINE Alu -28 284 202 182 319 14 42 chr15 54937202 54937274 -46443247 - MIR3 SINE MIR -136 72 3 2223 116 7 0 chr15 54937537 54937830 -46442691 - AluSc SINE Alu -14 295 1 180 0 0 0 chr15 54938061 54938081 -46442440 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1001 119 0 0 chr15 54938085 54938219 -46442302 - AluSg/x SINE Alu -45 267 134 2238 85 14 3 chr15 54938219 54938514 -46442007 - AluSq SINE Alu -15 298 1 363 44 0 0 chr15 54938962 54939007 -46441514 + (CAT)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr15 54939150 54939178 -46441343 + AT_rich Low_complexity Low_complexity 1 28 0 645 292 116 17 chr15 54939231 54939464 -46441057 + MIR SINE MIR 7 262 0 485 314 38 6 chr15 54940818 54940977 -46439544 + MIR3 SINE MIR 20 183 -25 1861 145 19 22 chr15 54941127 54941438 -46439083 + AluJo SINE Alu 1 310 -2 183 367 0 0 chr15 54943006 54943066 -46437455 - L2 LINE L2 -11 3302 3243 464 304 43 14 chr15 54943081 54943288 -46437233 + MIR SINE MIR 13 225 -37 1594 180 4 0 chr15 54943359 54943626 -46436895 + AluJo SINE Alu 1 268 -44 1812 114 24 4 chr15 54943739 54943994 -46436527 - AluSg SINE Alu -14 296 37 205 273 36 0 chr15 54944362 54944417 -46436104 - L2 LINE L2 0 3313 3257 33 25 0 0 chr15 54944614 54944654 -46435867 + AT_rich Low_complexity Low_complexity 1 40 0 790 300 73 0 chr15 54944667 54944900 -46435621 + MIR SINE MIR 13 262 0 1889 152 110 3 chr15 54945032 54945342 -46435179 - MER2 DNA MER2_type -1 343 1 247 329 58 0 chr15 54945487 54945642 -46434879 - L1ME LINE L1 -384 5737 5574 307 256 51 0 chr15 54945933 54946011 -46434510 + MIR SINE MIR 2 83 -179 252 0 0 0 chr15 54946631 54946659 -46433862 + (TG)n Simple_repeat Simple_repeat 1 28 0 180 77 0 0 chr15 54946661 54946687 -46433834 + (GA)n Simple_repeat Simple_repeat 2 27 0 202 333 0 0 chr15 54946881 54946938 -46433583 - L2 LINE L2 -3 3310 3254 406 259 60 0 chr15 54947553 54947669 -46432852 + L2 LINE L2 3191 3313 0 251 295 63 21 chr15 54947668 54947763 -46432758 - L2 LINE L2 -25 3247 3149 * 1049 156 117 54 chr15 54947776 54947981 -46432540 + MER20 DNA MER1_type 1 218 -1 406 287 23 16 chr15 54952241 54952370 -46428151 - MIR SINE MIR -50 212 83 253 195 0 78 chr15 54953084 54953161 -46427360 - MER5B DNA MER1_type 0 178 108 253 234 62 0 chr15 54953144 54953208 -46427313 + MER5B DNA MER1_type 106 173 -5 1092 160 22 0 chr15 54953345 54953526 -46426995 + MER20 DNA MER1_type 35 219 0 228 35 0 0 chr15 54954259 54954288 -46426233 + (CA)n Simple_repeat Simple_repeat 2 30 0 279 0 0 0 chr15 54954547 54954578 -46425943 + (TG)n Simple_repeat Simple_repeat 2 32 0 182 118 29 0 chr15 54954933 54954967 -46425554 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 258 244 12 49 chr15 54955140 54955222 -46425299 + ORSL DNA AcHobo 1 79 -196 294 271 82 8 chr15 54955761 54955883 -46424638 - MIR SINE MIR -81 181 51 376 224 26 0 chr15 54955894 54955970 -46424551 + MER81 DNA DNA 1 78 -36 800 267 202 23 chr15 54956193 54956839 -46423682 + L2 LINE L2 2508 3310 -3 341 286 152 0 chr15 54956846 54956951 -46423570 + MIR SINE MIR 36 156 -106 1147 188 21 71 chr15 54957241 54957581 -46422940 - L1MC5 LINE L1 -33 7928 7606 476 176 165 0 chr15 54957621 54957712 -46422809 - FLAM_A SINE Alu -36 106 1 478 280 176 5 chr15 54958730 54958923 -46421598 + MIR SINE MIR 1 226 -36 2274 223 74 58 chr15 54959246 54960478 -46420043 + L1ME2 LINE L1 4571 5822 -342 40947 69 3 11 chr15 54960483 54966685 -46413836 + L1PA5 LINE L1 4 6154 0 1197 254 11 37 chr15 54966669 54967020 -46413501 + L1ME2 LINE L1 5808 6149 -15 * 1510 220 17 6 chr15 54967028 54967374 -46413147 + L1MB7 LINE L1 1523 1872 -4512 877 205 30 34 chr15 54967434 54967697 -46412824 + L1MB7 LINE L1 4532 4793 -1589 943 289 9 33 chr15 54968231 54968560 -46411961 + MLT1E2 LTR MaLR 1 321 -305 531 213 37 22 chr15 54968535 54968691 -46411830 + MLT1D LTR MaLR 240 505 0 * 4057 180 22 33 chr15 54968691 54969337 -46411184 + L1MB7 LINE L1 4787 5439 -981 2069 133 7 3 chr15 54969337 54969645 -46410876 + AluSx SINE Alu 1 309 -3 4057 180 22 33 chr15 54969645 54970503 -46410018 + L1MB7 LINE L1 5439 6274 -146 572 237 15 0 chr15 54970597 54970728 -46409793 + L1MB7 LINE L1 6272 6404 -16 232 311 129 0 chr15 54970804 54970936 -46409585 + L1MC/D LINE L1 5612 5760 -2048 23 0 0 0 chr15 54971049 54971072 -46409449 + AT_rich Low_complexity Low_complexity 1 23 0 220 267 0 17 chr15 54971361 54971421 -46409100 + GA-rich Low_complexity Low_complexity 3 61 0 32 43 0 0 chr15 54971502 54971548 -46408973 + AT_rich Low_complexity Low_complexity 1 46 0 724 279 60 17 chr15 54972779 54973012 -46407509 - MIR SINE MIR 0 262 20 593 335 129 49 chr15 54973071 54973515 -46407006 + L3 LINE CR1 326 832 -745 2352 66 0 60 chr15 54973515 54973833 -46406688 + AluY SINE Alu 1 299 -12 593 335 129 49 chr15 54973833 54973983 -46406538 + L3 LINE CR1 832 968 -609 2154 127 56 12 chr15 54974140 54974480 -46406041 + THE1A LTR MaLR 1 355 0 1385 73 0 0 chr15 54974480 54974658 -46405863 + HERVL-A1 LTR ERVL 1 178 -5476 * 16528 66 6 2 chr15 54974635 54977729 -46402792 + HERVL-A1 LTR ERVL 1590 5654 0 2721 90 3 0 chr15 54977729 54978083 -46402438 + MLT2A1 LTR ERVL 1 355 -89 351 0 0 0 chr15 54978215 54978254 -46402267 + (TA)n Simple_repeat Simple_repeat 1 39 0 334 228 103 53 chr15 54978276 54978453 -46402068 + MLT1H1 LTR MaLR 358 542 -13 369 62 0 0 chr15 54978454 54978502 -46402019 - MLT2A2 LTR ERVL 0 453 406 300 146 0 0 chr15 54978496 54978544 -46401977 + MLT2A2 LTR ERVL 406 453 0 * 217 269 15 0 chr15 54978544 54978611 -46401910 + (TA)n Simple_repeat Simple_repeat 1 68 0 356 83 0 0 chr15 54978611 54978659 -46401862 + MLT2A1 LTR ERVL 390 437 -7 410 193 48 105 chr15 54978759 54978794 -46401727 - MLT1H LTR MaLR -257 292 257 2495 94 0 0 chr15 54978794 54979103 -46401418 - AluSg SINE Alu -1 309 1 410 193 48 105 chr15 54979103 54979306 -46401215 - MLT1H LTR MaLR -292 257 19 388 321 48 37 chr15 54979306 54979642 -46400879 + L3 LINE CR1 1119 1575 -2 473 243 41 99 chr15 54979749 54979994 -46400527 + MIR3 SINE MIR 49 251 -11 293 259 30 82 chr15 54980306 54980441 -46400080 - MIR3 SINE MIR -12 196 69 244 310 134 7 chr15 54980600 54980742 -46399779 + MIR SINE MIR 49 208 -54 315 219 110 12 chr15 54980980 54981062 -46399459 - Charlie8 DNA MER1_type -2225 192 103 190 420 15 15 chr15 54982504 54982635 -46397886 + MIR3 SINE MIR 65 195 -13 386 195 73 41 chr15 54982656 54982779 -46397742 - L1MC4 LINE L1 0 8042 7916 354 143 0 0 chr15 54982785 54982848 -46397673 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 7514 206 58 42 chr15 54982872 54983909 -46396612 - L1PA16 LINE L1 -2 6164 5145 2570 68 0 0 chr15 54983909 54984218 -46396303 + AluY SINE Alu 1 309 -2 7514 206 58 42 chr15 54984218 54984315 -46396206 - L1PA16 LINE L1 -1021 5145 5051 2878 118 49 0 chr15 54984315 54984723 -46395798 - MSTA LTR MaLR 0 428 1 7514 206 58 42 chr15 54984723 54984895 -46395626 - L1PA16 LINE L1 -1115 5051 4883 1734 104 133 4 chr15 54984895 54985165 -46395356 - AluSg SINE Alu -5 305 1 7514 206 58 42 chr15 54985165 54987773 -46392748 - L1PA16 LINE L1 -1283 4883 3783 2120 107 24 0 chr15 54987773 54987938 -46392583 - AluSq SINE Alu -15 298 122 225 65 0 0 chr15 54987938 54987969 -46392552 + (TG)n Simple_repeat Simple_repeat 2 32 0 2120 107 24 0 chr15 54987969 54988094 -46392427 - AluSq SINE Alu -191 122 1 7514 206 58 42 chr15 54988094 54988158 -46392363 - L1PA16 LINE L1 -2383 3783 3722 24 0 0 0 chr15 54988220 54988244 -46392277 + AT_rich Low_complexity Low_complexity 1 24 0 405 0 0 0 chr15 54988353 54988398 -46392123 + (CA)n Simple_repeat Simple_repeat 2 46 0 536 233 31 0 chr15 54988398 54988527 -46391994 - L1MC4a LINE L1 -1867 5941 5809 253 339 0 28 chr15 54988609 54988718 -46391803 - MIR3 SINE MIR -10 198 93 957 259 159 5 chr15 54988735 54989106 -46391415 + LTR16A LTR ERVL 18 445 -5 277 271 14 14 chr15 54989520 54989590 -46390931 + L2 LINE L2 3233 3302 -11 381 309 29 59 chr15 54989729 54989933 -46390588 + MLT1K LTR MaLR 198 395 -193 274 261 31 77 chr15 54991281 54991476 -46389045 - LTR67 LTR ERVL -8 549 364 211 265 0 0 chr15 54991815 54991864 -46388657 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 2287 103 0 3 chr15 54992030 54992330 -46388191 - AluSg SINE Alu -11 299 1 21 0 0 0 chr15 54992330 54992351 -46388170 + AT_rich Low_complexity Low_complexity 1 21 0 318 293 138 24 chr15 54994295 54994462 -46386059 - MIR SINE MIR -51 211 26 357 228 22 0 chr15 54995503 54995595 -46384926 - MER81 DNA DNA -1 113 20 871 140 65 48 chr15 54996916 54997102 -46383419 - MER53 DNA DNA 0 189 1 863 264 51 56 chr15 54998246 54998779 -46381742 + HAL1 LINE L1 788 1317 -1190 374 216 284 0 chr15 54998780 54998896 -46381625 - MIR SINE MIR 0 262 114 285 284 34 0 chr15 54998972 54999060 -46381461 - MIR SINE MIR -151 111 21 536 306 102 15 chr15 54999942 55000148 -46380373 - MIR SINE MIR -28 234 11 1023 280 116 7 chr15 55000210 55000674 -46379847 + HAL1 LINE L1 1403 1917 -590 381 284 172 45 chr15 55000740 55001159 -46379362 + HAL1 LINE L1 2036 2507 0 324 267 92 17 chr15 55001526 55001646 -46378875 + MIR3 SINE MIR 71 199 -9 1961 132 54 0 chr15 55001785 55002081 -46378440 + AluSx SINE Alu 1 312 0 219 36 0 0 chr15 55002827 55002855 -46377666 + (CA)n Simple_repeat Simple_repeat 2 29 0 201 299 21 21 chr15 55003091 55003188 -46377333 - MIR SINE MIR 0 262 166 2456 133 37 7 chr15 55003330 55003735 -46376786 + MSTA LTR MaLR 1 417 -11 333 0 0 0 chr15 55004156 55004193 -46376328 + (TG)n Simple_repeat Simple_repeat 1 37 0 3272 118 11 36 chr15 55004451 55004767 -46375754 + MER9 LTR ERVK 1 300 -211 2474 82 0 0 chr15 55004767 55005070 -46375451 + AluY SINE Alu 1 303 -8 3272 118 11 36 chr15 55005070 55005277 -46375244 + MER9 LTR ERVK 300 511 0 228 67 0 0 chr15 55005398 55005428 -46375093 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 812 127 21 7 chr15 55006073 55006215 -46374306 + MER9 LTR ERVK 368 511 0 228 67 0 0 chr15 55006336 55006366 -46374155 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1399 141 7 44 chr15 55007190 55007460 -46373061 + L1MB8 LINE L1 5916 6175 -3 415 267 41 47 chr15 55007479 55007651 -46372870 + MIR SINE MIR 65 235 -27 2157 105 3 20 chr15 55008953 55009259 -46371262 + AluSx SINE Alu 1 301 -11 790 287 13 4 chr15 55009677 55009907 -46370614 - MIR SINE MIR -21 241 10 228 296 16 56 chr15 55010296 55010421 -46370100 - MIR SINE MIR -56 206 87 1806 41 0 0 chr15 55010625 55010843 -46369678 - L1PA4 LINE L1 0 6155 5938 453 273 86 5 chr15 55011652 55011839 -46368682 - MIR SINE MIR -12 250 49 419 308 58 17 chr15 55011877 55012049 -46368472 + MIR SINE MIR 84 262 0 1325 295 131 4 chr15 55013012 55013538 -46366983 + MLT2E LTR ERVL 1 593 -35 280 267 13 0 chr15 55013538 55013613 -46366908 + MLT2E LTR ERVL 552 627 -1 182 259 69 0 chr15 55015273 55015331 -46365190 - MER5A DNA MER1_type -99 90 29 890 177 88 70 chr15 55015930 55016145 -46364376 + MER20 DNA MER1_type 1 219 0 1202 252 101 21 chr15 55016713 55017141 -46363380 - MER74A LTR ERVL -85 473 12 2146 116 0 3 chr15 55017143 55017437 -46363084 + AluSx SINE Alu 1 293 -19 2796 210 0 0 chr15 55018360 55018931 -46361590 - L1 LINE L1 -1142 5004 4434 2178 107 10 3 chr15 55018932 55019241 -46361280 + L1PB1 LINE L1 5829 6139 -12 295 265 29 10 chr15 55019253 55019355 -46361166 + MER5A DNA MER1_type 64 167 -22 217 190 0 114 chr15 55019376 55019455 -46361066 - MIR SINE MIR -128 134 65 250 263 158 0 chr15 55019922 55019998 -46360523 - MIR3 SINE MIR -7 201 114 1144 119 149 5 chr15 55020106 55020307 -46360214 + MER30 DNA MER1_type 1 230 0 350 305 106 0 chr15 55022086 55022227 -46358294 + MIR SINE MIR 99 254 -8 1577 208 49 59 chr15 55022420 55022891 -46357630 - MLT1C LTR MaLR -1 466 1 1900 200 101 24 chr15 55023150 55023614 -46356907 + MLT1D LTR MaLR 6 505 0 1608 269 59 18 chr15 55023689 55024251 -46356270 + HAL1 LINE L1 96 680 -1827 1680 223 120 41 chr15 55024279 55024980 -46355541 + HAL1 LINE L1 843 1598 -909 1122 210 41 24 chr15 55025036 55025331 -46355190 + MLT1D LTR MaLR 206 505 0 1125 169 5 0 chr15 55026169 55026353 -46354168 + AluSg/x SINE Alu 121 305 -7 2464 210 98 23 chr15 55026359 55026815 -46353706 + L1ME1 LINE L1 5310 5849 -335 1476 189 15 109 chr15 55026815 55027218 -46353303 - MLT1A1 LTR MaLR 0 365 1 2464 210 98 23 chr15 55027218 55027495 -46353026 + L1ME1 LINE L1 5849 6104 -80 27 29 0 0 chr15 55027505 55027539 -46352982 + AT_rich Low_complexity Low_complexity 1 34 0 190 241 44 117 chr15 55027960 55027986 -46352535 + MIR SINE MIR 122 148 -114 2758 94 0 0 chr15 55027986 55028338 -46352183 + THE1A LTR MaLR 4 355 0 190 241 44 117 chr15 55028338 55028448 -46352073 + MIR SINE MIR 148 248 -14 425 272 114 0 chr15 55028897 55029011 -46351510 - MER96 DNA MER1_type? 0 175 49 436 197 128 0 chr15 55029012 55029129 -46351392 + MER96 DNA MER1_type? 25 156 -19 211 250 62 38 chr15 55029148 55029228 -46351293 + MIR SINE MIR 20 101 -161 186 292 0 0 chr15 55029334 55029382 -46351139 + L2 LINE L2 3009 3056 -257 680 253 117 36 chr15 55029467 55029748 -46350773 - MLT1I LTR MaLR 0 409 106 257 229 174 21 chr15 55029852 55029996 -46350525 + L2 LINE L2 3142 3307 -6 402 214 175 49 chr15 55030797 55031082 -46349439 + LTR16A1 LTR ERVL 41 361 -96 225 129 0 0 chr15 55031118 55031149 -46349372 + LTR16A1 LTR ERVL 427 457 0 561 225 14 86 chr15 55031152 55031252 -46349269 + MER112 DNA MER1_type 60 139 -121 207 0 0 0 chr15 55031252 55031275 -46349246 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 561 225 14 86 chr15 55031275 55031383 -46349138 + MER112 DNA MER1_type 139 253 -7 394 194 65 0 chr15 55032682 55032837 -46347684 + CT-rich Low_complexity Low_complexity 4 168 0 318 312 47 42 chr15 55033125 55033340 -46347181 + L1ME3A LINE L1 5732 5947 -223 696 251 47 19 chr15 55033468 55033752 -46346769 + L1MD2 LINE L1 5808 6111 -55 2518 49 0 0 chr15 55033764 55034049 -46346472 + AluY SINE Alu 14 298 -13 1010 175 97 5 chr15 55034061 55034278 -46346243 + L1MB3 LINE L1 5945 6181 -2 2147 149 28 50 chr15 55035786 55036183 -46344338 - MLT1B LTR MaLR -2 388 1 1854 175 7 0 chr15 55037262 55037571 -46342950 + AluJo SINE Alu 1 311 -1 787 321 41 6 chr15 55037660 55038003 -46342518 + L1MEd LINE L1 133 487 -5718 716 230 40 6 chr15 55038077 55038251 -46342270 + LTR41 LTR ERVL 6 185 -588 418 219 144 109 chr15 55038460 55038716 -46341805 + LTR41 LTR ERVL 503 767 -6 560 281 87 32 chr15 55039161 55039830 -46340691 + L1MEd LINE L1 1028 1838 -738 508 244 153 16 chr15 55039846 55040088 -46340433 + LTR41 LTR ERVL 1 275 -498 467 222 97 35 chr15 55040266 55040410 -46340111 + LTR41 LTR ERVL 511 663 -110 2062 105 0 21 chr15 55041387 55041673 -46338848 + AluSx SINE Alu 1 280 -32 180 0 0 0 chr15 55041675 55041695 -46338826 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 600 261 130 46 chr15 55041712 55042234 -46338287 + L1MEd LINE L1 1739 2304 -4092 248 246 15 0 chr15 55042238 55042303 -46338218 + L1ME3A LINE L1 6044 6109 -61 1950 120 0 21 chr15 55042574 55042858 -46337663 + AluSx SINE Alu 3 280 -32 180 0 0 0 chr15 55042860 55042880 -46337641 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 600 261 130 46 chr15 55042897 55043419 -46337102 + L1MEc LINE L1 1739 2304 -4092 374 192 16 80 chr15 55043423 55043489 -46337032 + L1ME3A LINE L1 6044 6100 -70 2024 87 0 19 chr15 55043489 55043754 -46336767 - AluSc SINE Alu -6 303 44 374 192 16 80 chr15 55043754 55043812 -46336709 + L1ME3A LINE L1 6100 6160 -10 309 166 29 101 chr15 55043857 55043996 -46336525 + L1MEc LINE L1 2984 3112 -3103 697 191 15 37 chr15 55044767 55044903 -46335618 + FLAM_A SINE Alu 1 133 0 338 245 74 42 chr15 55044961 55045131 -46335390 + MLT1J LTR MaLR 5 148 -298 271 263 72 77 chr15 55045206 55045400 -46335121 + MLT1J LTR MaLR 289 481 -30 504 32 0 0 chr15 55045424 55045486 -46335035 + (TG)n Simple_repeat Simple_repeat 2 63 0 234 194 0 0 chr15 55045494 55045561 -46334960 + (TA)n Simple_repeat Simple_repeat 2 68 0 226 250 0 15 chr15 55045588 55045656 -46334865 + L1MC4 LINE L1 6640 6706 -1336 2090 116 10 0 chr15 55045656 55045949 -46334572 - AluSq SINE Alu -17 296 1 255 61 0 0 chr15 55046663 55046696 -46333825 + (TG)n Simple_repeat Simple_repeat 1 33 0 21 36 0 0 chr15 55047310 55047338 -46333183 + AT_rich Low_complexity Low_complexity 1 28 0 471 304 38 6 chr15 55047782 55047940 -46332581 + L1ME3A LINE L1 3 165 -5954 204 308 0 0 chr15 55047940 55047992 -46332529 + GA-rich Low_complexity Low_complexity 3 54 0 1276 265 112 32 chr15 55049324 55049940 -46330581 + L1ME3A LINE L1 3679 4343 -1786 2404 277 27 9 chr15 55049990 55050733 -46329788 + L1ME3A LINE L1 5393 6148 -5 292 178 0 68 chr15 55050965 55051038 -46329483 + HAL1 LINE L1 2236 2303 -204 2209 112 0 29 chr15 55051053 55051366 -46329155 - AluY SINE Alu -7 304 1 1050 241 78 74 chr15 55051367 55051864 -46328657 - MLT1H LTR MaLR -39 510 12 255 226 103 75 chr15 55051908 55051962 -46328559 + HAL1 LINE L1 2357 2408 -99 2563 190 83 0 chr15 55051962 55052004 -46328517 - MLT2B1 LTR ERVL 0 520 483 901 100 7 0 chr15 55052004 55052144 -46328377 + (TA)n Simple_repeat Simple_repeat 1 141 0 2563 190 83 0 chr15 55052144 55052581 -46327940 - MLT2B1 LTR ERVL -37 483 1 255 226 103 75 chr15 55052581 55052672 -46327849 + HAL1 LINE L1 2408 2506 -1 216 100 0 25 chr15 55052711 55052751 -46327770 + (CAAAAA)n Simple_repeat Simple_repeat 6 44 0 191 358 68 31 chr15 55052978 55053140 -46327381 - L2 LINE L2 -22 3250 3083 * 236 290 121 8 chr15 55053107 55053231 -46327290 + L2 LINE L2 3176 3313 0 253 311 172 0 chr15 55053885 55054007 -46326514 + MIR SINE MIR 89 231 -31 235 297 0 0 chr15 55054137 55054201 -46326320 + HAL1 LINE L1 2246 2309 -198 211 236 73 0 chr15 55055038 55055093 -46325428 + MIR SINE MIR 52 110 -152 714 270 104 77 chr15 55056560 55056602 -46323919 + HAL1 LINE L1 1036 1075 -1432 1947 138 3 7 chr15 55056602 55056899 -46323622 - AluJb SINE Alu -16 296 1 714 270 104 77 chr15 55056899 55057122 -46323399 + HAL1 LINE L1 1075 1290 -1217 306 91 0 0 chr15 55057122 55057166 -46323355 + L1PA10 LINE L1 6124 6167 -1 714 270 104 77 chr15 55057166 55057655 -46322866 + HAL1 LINE L1 1290 1812 -695 229 290 0 0 chr15 55057812 55057874 -46322647 + GA-rich Low_complexity Low_complexity 4 65 0 324 257 59 89 chr15 55058216 55058453 -46322068 + HAL1 LINE L1 2245 2474 -33 218 175 0 0 chr15 55058484 55058524 -46321997 + (TG)n Simple_repeat Simple_repeat 2 41 0 286 289 138 31 chr15 55058618 55058777 -46321744 - MIR SINE MIR -50 212 37 216 0 0 0 chr15 55058798 55058822 -46321699 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 265 208 99 69 chr15 55059440 55059541 -46320980 - Charlie7 DNA MER1_type -2508 104 1 887 236 20 10 chr15 55059616 55059819 -46320702 - MIR SINE MIR 0 262 58 5735 215 60 32 chr15 55059825 55061343 -46319178 - L1MC3 LINE L1 0 7785 6225 244 109 31 141 chr15 55061344 55061408 -46319113 - MLT2B2 LTR ERVL 0 515 459 945 225 51 21 chr15 55061434 55061670 -46318851 - MLT1B LTR MaLR -141 249 7 1243 210 18 15 chr15 55061726 55061998 -46318523 - MLT2C1 LTR ERVL -124 273 1 242 279 244 65 chr15 55062120 55062321 -46318200 - MIR SINE MIR -18 244 8 2030 132 16 7 chr15 55062519 55062822 -46317699 - AluSx SINE Alu -4 308 3 1350 270 48 81 chr15 55064520 55065509 -46315012 - L1ME3A LINE L1 -8 6145 5199 590 274 74 46 chr15 55065514 55066024 -46314497 - L1MEd LINE L1 -4598 1712 1149 621 306 82 44 chr15 55066057 55066620 -46313901 - L1MEd LINE L1 -5040 1079 496 424 273 85 59 chr15 55066783 55067054 -46313467 - L1MEd LINE L1 -5838 281 4 682 267 159 0 chr15 55067328 55067523 -46312998 - MIR SINE MIR -34 228 3 289 184 40 40 chr15 55067670 55067746 -46312775 - MER5B DNA MER1_type -78 100 25 208 260 52 26 chr15 55067690 55067767 -46312754 + MER5A DNA MER1_type 109 187 -2 * 262 182 34 125 chr15 55067894 55067982 -46312539 + MIR SINE MIR 68 143 -65 2376 117 15 63 chr15 55069161 55069555 -46310966 - THE1C LTR MaLR 0 375 1 462 308 65 22 chr15 55069666 55069851 -46310670 - MIR SINE MIR -50 212 20 291 253 155 90 chr15 55071543 55071910 -46308611 - MLT1J LTR MaLR -12 499 109 408 316 75 27 chr15 55072658 55072845 -46307676 + MIR3 SINE MIR 1 196 -12 204 236 174 38 chr15 55073397 55073549 -46306972 + MIR SINE MIR 10 189 -73 2650 13 40 0 chr15 55073598 55073897 -46306624 - AluYa5 SINE Alu 0 311 1 25 31 0 0 chr15 55073903 55073935 -46306586 + AT_rich Low_complexity Low_complexity 1 32 0 314 231 58 19 chr15 55074168 55074272 -46306249 + L1MA10 LINE L1 6225 6332 -2 1052 262 180 28 chr15 55074405 55074871 -46305650 + MER34 LTR ERV1 6 542 0 265 328 157 0 chr15 55074927 55075061 -46305460 - MIR SINE MIR -10 252 98 451 182 169 26 chr15 55075074 55075166 -46305355 - MER5B DNA MER1_type 0 178 100 2604 40 0 0 chr15 55075166 55075464 -46305057 - AluY SINE Alu -13 298 1 451 182 169 26 chr15 55075464 55075525 -46304996 - MER5B DNA MER1_type -78 100 3 465 287 66 89 chr15 55076554 55076812 -46303709 - L2 LINE L2 -1 3271 3020 249 33 0 0 chr15 55076894 55076924 -46303597 + (GA)n Simple_repeat Simple_repeat 2 31 0 2221 150 31 0 chr15 55077817 55078170 -46302351 + MER47A DNA MER2_type 3 366 0 386 265 49 81 chr15 55078520 55078705 -46301816 + MIR3 SINE MIR 1 179 -29 1582 186 27 72 chr15 55079128 55079531 -46300990 + MLT1B LTR MaLR 1 385 -5 1676 244 73 23 chr15 55079556 55080073 -46300448 - REP3 LTR ERV -18 544 2 2149 121 0 0 chr15 55080269 55080559 -46299962 + AluSx SINE Alu 1 290 -22 2571 62 0 10 chr15 55080564 55080872 -46299649 + AluY SINE Alu 1 305 -6 711 231 123 15 chr15 55080927 55081195 -46299326 + L1ME2 LINE L1 5858 6154 -10 818 253 137 22 chr15 55081302 55081862 -46298659 - L1ME4a LINE L1 -198 5923 5287 872 179 42 147 chr15 55082285 55082598 -46297923 + MER33 DNA MER1_type 39 354 -9 538 267 44 32 chr15 55082673 55082890 -46297631 - MIR SINE MIR -20 242 27 322 164 0 0 chr15 55082891 55082946 -46297575 + MIR SINE MIR 93 147 -61 1547 229 53 17 chr15 55082946 55083361 -46297160 - LTR16A LTR ERVL 0 450 21 2436 160 16 40 chr15 55084174 55084388 -46296133 + Tigger2a DNA MER2_type 1 200 -2508 12290 147 20 16 chr15 55084388 55087216 -46293305 - L1PA11 LINE L1 -8 6166 3328 2436 160 16 40 chr15 55087216 55087446 -46293075 + Tigger2a DNA MER2_type 200 434 0 1583 218 58 12 chr15 55088238 55088716 -46291805 + L1ME1 LINE L1 4213 4737 -1409 563 218 68 20 chr15 55088714 55088861 -46291660 + L1MA10 LINE L1 6179 6332 -2 * 319 279 14 95 chr15 55089184 55089280 -46291241 - L2 LINE L2 -1 3312 3230 783 211 79 49 chr15 55089280 55089545 -46290976 + ORSL DNA AcHobo 1 273 -2 319 279 14 95 chr15 55089545 55089595 -46290926 - L2 LINE L2 -83 3230 3178 2174 225 37 77 chr15 55089809 55090696 -46289825 + L1ME1 LINE L1 5175 6001 -165 * 4112 149 18 1 chr15 55090152 55090836 -46289685 + L1MB2 LINE L1 5454 6148 -23 523 329 78 76 chr15 55090846 55091342 -46289179 - L2 LINE L2 -561 2753 2254 1797 86 4 13 chr15 55091342 55091574 -46288947 + MER30 DNA MER1_type 1 230 0 523 329 78 76 chr15 55091574 55091746 -46288775 - L2 LINE L2 -1060 2254 2084 882 199 61 0 chr15 55091753 55091949 -46288572 - L1 LINE L1 -820 5326 5119 14802 213 26 19 chr15 55092025 55096813 -46283708 - L1PA16 LINE L1 0 6882 1992 1249 198 0 0 chr15 55096867 55097079 -46283442 - AluJo SINE Alu -14 298 87 4354 185 30 7 chr15 55097079 55097980 -46282541 - L1 LINE L1 -1013 5133 4212 5702 157 15 3 chr15 55097980 55098435 -46282086 + L1MA5 LINE L1 5329 5777 -523 477 0 0 0 chr15 55098435 55098488 -46282033 + (CA)n Simple_repeat Simple_repeat 2 54 0 5702 157 15 3 chr15 55098488 55098983 -46281538 + L1MA5 LINE L1 5777 6290 -10 186 43 0 0 chr15 55098991 55099014 -46281507 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 304 271 0 12 chr15 55099016 55099101 -46281420 - MIR SINE MIR -123 139 56 339 222 51 91 chr15 55099164 55099340 -46281181 + MIR SINE MIR 33 201 -61 485 222 123 37 chr15 55100755 55100917 -46279604 - MIR SINE MIR -30 232 57 811 243 11 11 chr15 55101924 55102101 -46278420 - MIR3 SINE MIR -31 177 1 239 325 43 26 chr15 55102520 55102637 -46277884 - L3 LINE CR1 -7 1570 1452 684 298 137 12 chr15 55103169 55103511 -46277010 - L2 LINE L2 -1 3312 2928 236 267 310 0 chr15 55103714 55103830 -46276691 - MIR SINE MIR -54 208 57 1131 280 72 10 chr15 55104036 55104440 -46276081 + LTR16B LTR ERVL 36 464 0 4522 135 20 62 chr15 55104908 55105694 -46274827 + Tigger1 DNA MER2_type 1 753 -1665 1904 135 10 23 chr15 55105673 55105977 -46274544 + Tigger1 DNA MER2_type 2119 2418 0 * 1017 128 0 0 chr15 55106003 55106136 -46274385 + FLAM_C SINE Alu 1 133 0 22 0 0 0 chr15 55106136 55106158 -46274363 + AT_rich Low_complexity Low_complexity 1 22 0 710 147 149 18 chr15 55106209 55106412 -46274109 - MER33 DNA MER1_type -92 232 1 21 36 0 0 chr15 55106582 55106610 -46273911 + AT_rich Low_complexity Low_complexity 1 28 0 280 309 111 31 chr15 55106903 55107065 -46273456 - MIR SINE MIR -12 250 76 279 290 97 0 chr15 55107119 55107243 -46273278 + L1ME LINE L1 5528 5663 -458 337 120 0 0 chr15 55107245 55107295 -46273226 + MER2 DNA MER2_type 113 162 -183 337 311 38 0 chr15 55107354 55107460 -46273061 - L2 LINE L2 -1 3312 3203 2547 183 39 50 chr15 55107484 55107885 -46272636 - Charlie5 DNA MER1_type -7 2617 2224 1822 161 20 10 chr15 55107885 55108183 -46272338 - AluSx SINE Alu -9 303 3 2547 183 39 50 chr15 55108183 55108448 -46272073 - Charlie5 DNA MER1_type -400 2224 1958 972 167 6 17 chr15 55108447 55108627 -46271894 + MER2 DNA MER2_type 33 210 -135 * 381 113 0 0 chr15 55108783 55108836 -46271685 - L1MB1 LINE L1 -1 6167 6115 838 192 0 62 chr15 55108854 55109031 -46271490 - AluJo SINE Alu -30 282 117 233 146 55 0 chr15 55109043 55109098 -46271423 + T-rich Low_complexity Low_complexity 3 60 0 733 202 23 0 chr15 55109100 55109229 -46271292 - AluJo SINE Alu -179 133 2 7620 164 55 40 chr15 55109243 55109901 -46270620 - Charlie5 DNA MER1_type -672 1952 1306 2195 78 0 0 chr15 55109901 55110171 -46270350 + L1PA6 LINE L1 5885 6154 0 7620 164 55 40 chr15 55110171 55111366 -46269155 - Charlie5 DNA MER1_type -1318 1306 25 243 0 0 0 chr15 55111776 55111803 -46268718 + (CA)n Simple_repeat Simple_repeat 2 28 0 695 246 174 0 chr15 55112063 55112258 -46268263 + MIR SINE MIR 13 241 -21 182 233 47 0 chr15 55112391 55112434 -46268087 + L2 LINE L2 3228 3272 0 234 266 79 72 chr15 55113407 55113546 -46266975 + L2 LINE L2 3171 3310 -3 1803 223 122 66 chr15 55114174 55114869 -46265652 + MER50 LTR ERV1 1 734 0 292 135 77 0 chr15 55115063 55115115 -46265406 - MLT2B3 LTR ERVL 0 520 465 321 135 0 0 chr15 55115115 55115167 -46265354 + (TG)n Simple_repeat Simple_repeat 2 53 0 2306 147 13 37 chr15 55115179 55115635 -46264886 - MLT2B3 LTR ERVL -46 469 1 4872 39 0 0 chr15 55115927 55116511 -46264010 - L1PA5 LINE L1 -840 5306 4723 7656 33 5 0 chr15 55116511 55117365 -46263156 + L1PA5 LINE L1 5297 6154 0 2229 120 0 0 chr15 55118388 55118696 -46261825 - AluSg SINE Alu 0 310 3 2174 104 16 7 chr15 55118704 55119013 -46261508 - AluSx SINE Alu 0 312 1 378 284 98 44 chr15 55119320 55119545 -46260976 - L1ME LINE L1 -393 5728 5492 1966 139 0 0 chr15 55119728 55120008 -46260513 + AluJb SINE Alu 24 303 -9 317 300 45 24 chr15 55120050 55120281 -46260240 + LTR16A LTR ERVL 25 286 -171 299 258 0 0 chr15 55120313 55120379 -46260142 + LTR16A LTR ERVL 375 440 -10 245 186 207 43 chr15 55120627 55120767 -46259754 - L1ME LINE L1 -2330 5478 5316 415 314 78 4 chr15 55121035 55121280 -46259241 - L1ME4a LINE L1 -207 5914 5652 3331 136 41 9 chr15 55121289 55121820 -46258701 - MER41B LTR ERV1 -87 548 1 1668 80 14 0 chr15 55121820 55122033 -46258488 - MER41B-int LTR ERV1 -2 5944 5729 575 139 58 0 chr15 55122029 55122115 -46258406 - MER41B-int LTR ERV1 -5855 91 1 * 1079 73 26 0 chr15 55122115 55122266 -46258255 - MER41B LTR ERV1 0 635 481 315 313 52 9 chr15 55123145 55123260 -46257261 + MIR SINE MIR 26 145 -117 1605 149 87 7 chr15 55123591 55123866 -46256655 + AluSx SINE Alu 2 298 -14 1966 143 10 0 chr15 55125810 55126110 -46254411 + AluSx SINE Alu 3 305 -7 338 301 103 29 chr15 55127988 55128124 -46252397 + MER5A DNA MER1_type 7 152 -37 284 281 73 0 chr15 55128488 55128570 -46251951 - L2 LINE L2 -1 3271 3184 378 0 0 0 chr15 55129004 55129046 -46251475 + (CA)n Simple_repeat Simple_repeat 2 43 0 547 276 70 13 chr15 55129304 55129532 -46250989 + MIR SINE MIR 19 259 -3 471 258 38 15 chr15 55129579 55129711 -46250810 - L2 LINE L2 0 3313 3179 2152 189 60 25 chr15 55129717 55130166 -46250355 - MLT1C LTR MaLR 0 467 3 2083 161 19 16 chr15 55130938 55131305 -46249216 + L1MC1 LINE L1 5966 6333 0 1212 196 60 105 chr15 55131420 55131802 -46248719 - MLT1A1 LTR MaLR 0 365 1 32522 107 11 59 chr15 55131875 55138333 -46242188 + L1PA7 LINE L1 12 6153 -1 186 103 0 0 chr15 55138880 55138909 -46241612 + (TC)n Simple_repeat Simple_repeat 1 29 0 303 93 0 0 chr15 55138909 55138952 -46241569 + (TG)n Simple_repeat Simple_repeat 2 44 0 249 342 52 52 chr15 55139120 55139275 -46241246 + MIR3 SINE MIR 3 157 -51 1354 203 86 92 chr15 55139564 55140032 -46240489 - MER4C LTR ERV1 0 465 1 694 270 5 25 chr15 55140039 55140239 -46240282 - MER4C-int LTR ERV1 -8 6590 6395 273 245 35 77 chr15 55140245 55140388 -46240133 - MER4C-int LTR ERV1 -171 6427 6291 325 167 26 13 chr15 55140408 55140486 -46240035 + (TATATG)n Simple_repeat Simple_repeat 6 84 0 3710 96 69 22 chr15 55140495 55141077 -46239444 - MER4C-int LTR ERV1 -487 5844 5236 900 99 0 8 chr15 55141077 55141198 -46239323 + AluSg/x SINE Alu 183 302 -10 8275 149 35 45 chr15 55141198 55143044 -46237477 - MER4C-int LTR ERV1 -923 5670 3192 967 167 90 162 chr15 55143130 55143519 -46237002 - MER4C LTR ERV1 -103 362 2 4169 119 49 10 chr15 55144260 55144888 -46235633 - MER39B LTR ERV1 0 653 1 2125 157 52 11 chr15 55145491 55145860 -46234661 + MLT1B LTR MaLR 7 390 0 2719 148 33 86 chr15 55145895 55146497 -46234024 - MER34C LTR ERV1 0 585 16 1834 189 30 11 chr15 55146512 55146878 -46233643 + MLT1D LTR MaLR 133 505 0 241 247 243 95 chr15 55146907 55147060 -46233461 + L2 LINE L2 3033 3162 -151 2181 117 0 7 chr15 55147060 55147369 -46233152 + AluSx SINE Alu 6 312 0 241 247 243 95 chr15 55147369 55147458 -46233063 + L2 LINE L2 3162 3311 -2 299 114 0 0 chr15 55147650 55147694 -46232827 - MLT2B1 LTR ERVL 0 520 477 674 55 11 0 chr15 55147694 55147785 -46232736 + (TAGA)n Simple_repeat Simple_repeat 1 92 0 303 260 0 14 chr15 55147784 55147857 -46232664 - MER7A DNA MER2_type -1 335 264 2860 135 103 10 chr15 55147857 55148354 -46232167 + LTR36 LTR ERV1 1 543 -68 1033 188 138 0 chr15 55148354 55148594 -46231927 + L1 LINE L1 4267 4539 -1607 1858 128 4 0 chr15 55148592 55148866 -46231655 - L1PA13 LINE L1 -3 6160 5886 2061 126 0 36 chr15 55149226 55149535 -46230986 - AluSx SINE Alu -14 298 1 1900 218 35 48 chr15 55149837 55150318 -46230203 + MLT2B1 LTR ERVL 1 475 -45 1595 161 47 4 chr15 55150320 55150587 -46229934 + MER7A DNA MER2_type 3 279 -67 601 154 11 0 chr15 55150587 55150678 -46229843 - LTR36 LTR ERV1 0 611 520 1272 82 6 6 chr15 55150678 55150848 -46229673 + L1PA12 LINE L1 5673 5842 -326 1075 194 128 53 chr15 55151164 55151484 -46229037 + MER2 DNA MER2_type 1 344 0 719 313 68 27 chr15 55151588 55152070 -46228451 - L1MC/D LINE L1 -1997 5811 5310 2106 110 0 58 chr15 55152212 55152539 -46227982 - AluSg SINE Alu -2 308 1 410 322 59 7 chr15 55153265 55153535 -46226986 - L1MC/D LINE L1 -2758 3388 3105 3037 134 54 33 chr15 55153714 55154230 -46226291 - MER1A DNA MER1_type 0 527 1 719 256 71 27 chr15 55154318 55154654 -46225867 - L1MC4 LINE L1 -4 8038 7688 285 232 50 0 chr15 55154654 55154753 -46225768 + (TA)n Simple_repeat Simple_repeat 1 104 0 398 190 140 0 chr15 55155174 55155274 -46225247 - MIR SINE MIR -76 186 73 2546 53 0 7 chr15 55156012 55156314 -46224207 + AluY SINE Alu 1 300 -11 348 232 22 80 chr15 55156372 55156510 -46224011 + MIR SINE MIR 63 192 -70 180 0 0 0 chr15 55157528 55157548 -46222973 + (T)n Simple_repeat Simple_repeat 1 20 0 304 205 60 24 chr15 55157568 55157651 -46222870 - MER5A DNA MER1_type -31 158 73 2235 133 0 0 chr15 55157662 55157971 -46222550 - AluSx SINE Alu -3 309 1 412 251 112 27 chr15 55158039 55158191 -46222330 + MIR SINE MIR 38 199 -63 2142 132 0 0 chr15 55158423 55158719 -46221802 - AluSx SINE Alu -12 300 5 21 57 0 0 chr15 55158870 55158905 -46221616 + AT_rich Low_complexity Low_complexity 1 35 0 4246 160 11 16 chr15 55160939 55161687 -46218834 + MER49 LTR ERV1 180 923 0 251 218 18 18 chr15 55161889 55161944 -46218577 + MLT1E2 LTR MaLR 1 55 -599 2089 223 73 5 chr15 55161981 55162420 -46218101 + MLT1E2 LTR MaLR 156 624 -2 687 299 113 0 chr15 55162701 55162932 -46217589 + MLT1L LTR MaLR 359 615 0 238 255 10 49 chr15 55163252 55163354 -46217167 + MIR SINE MIR 105 202 -60 264 190 0 35 chr15 55163396 55163454 -46217067 + L2 LINE L2 3250 3305 -8 377 381 46 0 chr15 55164161 55164379 -46216142 + MIR SINE MIR 25 252 -10 299 368 14 23 chr15 55164556 55164776 -46215745 - L2 LINE L2 -547 2767 2550 1898 176 27 32 chr15 55166451 55166472 -46214049 - MLT1A2 LTR MaLR 0 374 354 2377 143 87 2 chr15 55166472 55166865 -46213656 + MSTB LTR MaLR 1 426 0 1898 176 27 32 chr15 55166865 55167218 -46213303 - MLT1A2 LTR MaLR -20 354 2 348 291 90 0 chr15 55167541 55167675 -46212846 - L3 LINE CR1 -1 1576 1431 237 311 93 13 chr15 55167807 55167958 -46212563 + MIR SINE MIR 57 219 -43 209 336 97 35 chr15 55168182 55168295 -46212226 + L2 LINE L2 3145 3264 -8 749 154 73 0 chr15 55168579 55168702 -46211819 - AluSq/x SINE Alu -179 133 2 242 291 47 0 chr15 55169307 55169393 -46211128 + L2 LINE L2 3186 3275 -38 1303 264 63 34 chr15 55169684 55170131 -46210390 - LTR40c LTR ERVL -5 460 1 1995 138 53 60 chr15 55170447 55170845 -46209676 + MLT2C1 LTR ERVL 1 395 -2 2107 77 0 0 chr15 55171805 55172065 -46208456 - AluY SINE Alu -21 290 31 462 245 99 19 chr15 55172279 55172508 -46208013 + MIR SINE MIR 8 259 -3 1106 185 19 5 chr15 55173745 55173961 -46206560 + MER20 DNA MER1_type 1 219 0 226 208 0 0 chr15 55174407 55174455 -46206066 - MIR SINE MIR -111 151 104 198 259 52 17 chr15 55174669 55174727 -46205794 + MIR SINE MIR 40 99 -163 3658 111 52 32 chr15 55174945 55175565 -46204956 - MER39B LTR ERV1 -2 651 20 312 83 0 0 chr15 55175787 55175835 -46204686 + (TG)n Simple_repeat Simple_repeat 2 49 0 717 272 144 7 chr15 55176062 55176367 -46204154 + L3 LINE CR1 1149 1495 -82 252 205 241 18 chr15 55176493 55176605 -46203916 + MER117 DNA MER1_type 1 137 -60 375 264 208 0 chr15 55177998 55178142 -46202379 + MER5A DNA MER1_type 9 182 -7 404 237 167 32 chr15 55178151 55178307 -46202214 - MIR SINE MIR -57 205 29 190 278 200 17 chr15 55179168 55179283 -46201238 + MIR3 SINE MIR 58 193 -15 242 200 17 33 chr15 55180348 55180408 -46200113 + MLT1K LTR MaLR 522 580 -8 356 295 77 0 chr15 55181166 55181320 -46199201 - MIR SINE MIR -80 182 17 778 179 17 29 chr15 55181320 55181493 -46199028 + MER5A DNA MER1_type 1 171 -18 509 240 187 0 chr15 55181507 55181657 -46198864 + MER5A DNA MER1_type 9 186 -3 2327 94 0 10 chr15 55181657 55181955 -46198566 + AluSg SINE Alu 1 295 -15 1064 226 48 96 chr15 55182049 55182574 -46197947 - MER34 LTR ERV1 -38 557 1 21 0 0 0 chr15 55185788 55185809 -46194712 + AT_rich Low_complexity Low_complexity 1 21 0 2096 153 21 44 chr15 55186046 55186433 -46194088 + L1PA16 LINE L1 5769 6146 -20 698 264 96 16 chr15 55186455 55186895 -46193626 + L1ME4a LINE L1 5643 6117 -4 2354 98 0 16 chr15 55187455 55187772 -46192749 - AluSp SINE Alu -1 312 1 408 264 9 0 chr15 55187812 55187918 -46192603 + L2 LINE L2 2088 2194 -1120 2312 109 0 0 chr15 55188548 55188859 -46191662 - AluSx SINE Alu -1 311 1 1413 163 4 40 chr15 55190075 55190327 -46190194 - AluJo SINE Alu -4 308 66 330 329 15 0 chr15 55190581 55190718 -46189803 - MIR SINE MIR -30 232 94 1417 166 78 71 chr15 55190901 55191148 -46189373 + LTR37A LTR ERV1 1 254 -172 2552 53 3 0 chr15 55191148 55191451 -46189070 - AluY SINE Alu -7 304 1 1417 166 78 71 chr15 55191451 55191624 -46188897 + LTR37A LTR ERV1 254 424 -2 2043 158 23 27 chr15 55192033 55192551 -46187970 + MLT2A2 LTR ERVL 1 409 -44 370 262 141 7 chr15 55192675 55192824 -46187697 + MIR SINE MIR 24 192 -70 362 200 127 5 chr15 55193813 55193951 -46186570 + MIR SINE MIR 41 192 -62 315 235 24 0 chr15 55194009 55194094 -46186427 - MIR SINE MIR -114 148 62 201 319 111 15 chr15 55194582 55194717 -46185804 + MIR SINE MIR 12 159 -103 1982 127 3 47 chr15 55195168 55195490 -46185031 + AluSx SINE Alu 1 308 -4 321 256 38 62 chr15 55195994 55196154 -46184367 - MER5A DNA MER1_type 0 189 34 398 276 109 43 chr15 55196316 55196526 -46183995 - MIR SINE MIR -17 245 22 1928 148 0 17 chr15 55196526 55196824 -46183697 - AluJo SINE Alu -11 301 9 589 116 12 0 chr15 55197540 55197626 -46182895 + FLAM_C SINE Alu 30 116 -27 287 25 25 0 chr15 55197626 55197666 -46182855 + (TAAAA)n Simple_repeat Simple_repeat 1 41 0 183 255 20 0 chr15 55197801 55197852 -46182669 - MIR SINE MIR -111 151 100 2376 99 0 0 chr15 55198564 55198868 -46181653 + AluSg SINE Alu 5 308 -2 1844 239 176 26 chr15 55199027 55199770 -46180751 + L2 LINE L2 2284 3183 -130 2386 77 3 0 chr15 55199770 55200068 -46180453 - AluSg SINE Alu -11 299 1 1844 239 176 26 chr15 55200068 55200222 -46180299 + L2 LINE L2 3183 3312 -1 757 217 29 10 chr15 55202374 55202581 -46177940 - L1ME3A LINE L1 -213 5957 5747 1280 132 18 53 chr15 55202972 55203199 -46177322 + MER20 DNA MER1_type 1 219 0 276 238 79 56 chr15 55203384 55203510 -46177011 - MIR SINE MIR -113 149 21 1536 166 71 25 chr15 55203953 55204321 -46176200 - Charlie1 DNA MER1_type -34 2727 2343 2893 219 54 35 chr15 55204496 55204593 -46175928 + MER97a DNA MER1_type? 45 139 -755 2172 107 3 3 chr15 55204593 55204884 -46175637 + AluSq SINE Alu 1 291 -22 2893 219 54 35 chr15 55204884 55205620 -46174901 + MER97a DNA MER1_type? 139 894 0 210 213 0 0 chr15 55205725 55205772 -46174749 - L2 LINE L2 -224 3048 3002 596 228 71 49 chr15 55208356 55208403 -46172118 - MER5A DNA MER1_type 0 189 145 2324 105 0 0 chr15 55208403 55208707 -46171814 - AluSg SINE Alu -6 304 1 596 228 71 49 chr15 55208707 55208843 -46171678 - MER5A DNA MER1_type -44 145 2 180 250 0 58 chr15 55209693 55209745 -46170776 - L2 LINE L2 -257 3056 3008 216 275 0 75 chr15 55210405 55210485 -46170036 - MIR SINE MIR -59 203 130 297 193 73 46 chr15 55210580 55210689 -46169832 - MER90 LTR ERV1 -147 467 356 21 36 0 0 chr15 55210704 55210732 -46169789 + AT_rich Low_complexity Low_complexity 1 28 0 445 265 66 0 chr15 55211571 55211707 -46168814 - MIR SINE MIR -44 218 74 2007 127 17 0 chr15 55211885 55212177 -46168344 - AluSx SINE Alu -15 297 1 1226 173 107 69 chr15 55212649 55213070 -46167451 - LTR7 LTR ERV1 -13 437 1 2165 139 35 11 chr15 55213408 55213783 -46166738 - MLT1B LTR MaLR -6 384 1 259 215 15 15 chr15 55213785 55213850 -46166671 - L2 LINE L2 -11 3261 3197 448 362 15 10 chr15 55214613 55214809 -46165712 + MIR SINE MIR 20 216 -46 373 228 114 44 chr15 55214914 55215072 -46165449 - L1MC4 LINE L1 0 8042 7874 1024 118 0 0 chr15 55215170 55215305 -46165216 - AluSg/x SINE Alu -15 295 161 424 228 24 8 chr15 55215319 55215446 -46165075 - L1MC4 LINE L1 -225 7817 7689 432 303 56 0 chr15 55215638 55215780 -46164741 + L2 LINE L2 3123 3272 0 2272 113 3 6 chr15 55215830 55216141 -46164380 + AluSx SINE Alu 1 310 -2 533 265 142 12 chr15 55216606 55216768 -46163753 - MER5A DNA MER1_type 0 189 7 234 222 19 19 chr15 55217122 55217176 -46163345 + MIR SINE MIR 61 114 -94 180 340 148 43 chr15 55217372 55217581 -46162940 - L2 LINE L2 -1 3271 3041 454 298 50 0 chr15 55217584 55217745 -46162776 - MIR SINE MIR -19 243 75 1884 129 44 14 chr15 55218514 55218808 -46161713 - AluSx SINE Alu -9 303 1 964 187 16 16 chr15 55219190 55219377 -46161144 - MER5A DNA MER1_type 0 189 3 248 314 99 0 chr15 55220238 55220359 -46160162 - MLT1K LTR MaLR 0 588 456 256 295 107 33 chr15 55220517 55220639 -46159882 - MLT1K LTR MaLR -360 228 98 1008 195 5 11 chr15 55221106 55221291 -46159230 + MER5A DNA MER1_type 1 184 -5 207 100 0 0 chr15 55221678 55221708 -46158813 + (GGGTG)n Simple_repeat Simple_repeat 4 33 0 1500 140 133 7 chr15 55222588 55222859 -46157662 + AluJb SINE Alu 6 310 -2 447 244 175 6 chr15 55222944 55223104 -46157417 - MIR SINE MIR -55 207 21 2019 195 73 26 chr15 55223797 55224160 -46156361 - MER63C DNA MER1_type -160 900 505 1088 206 28 5 chr15 55224160 55224378 -46156143 - MER58A DNA MER1_type 0 224 2 2019 195 73 26 chr15 55224378 55224521 -46156000 - MER63C DNA MER1_type -555 505 370 1247 230 84 12 chr15 55274523 55274867 -46105654 - MER63C DNA MER1_type -561 369 1 344 244 122 56 chr15 55275233 55275413 -46105108 + L1ME4a LINE L1 5930 6121 0 345 331 46 0 chr15 55275829 55275959 -46104562 - MIR3 SINE MIR -12 196 61 2405 90 0 0 chr15 55276080 55276379 -46104142 - AluSp SINE Alu -13 300 2 209 209 70 0 chr15 55276570 55276613 -46103908 + L2 LINE L2 3020 3065 -207 422 298 16 37 chr15 55279448 55279639 -46100882 - MIR SINE MIR -27 235 49 241 315 131 8 chr15 55279743 55279873 -46100648 + MIR3 SINE MIR 15 160 -48 629 272 127 9 chr15 55280166 55280379 -46100142 - MIR SINE MIR 0 262 25 1992 120 0 42 chr15 55280380 55280688 -46099833 - AluSx SINE Alu -17 295 1 231 331 143 30 chr15 55281134 55281267 -46099254 + L2 LINE L2 3121 3268 -4 2171 132 0 0 chr15 55283660 55283947 -46096574 + AluSx SINE Alu 1 287 -25 360 259 9 46 chr15 55285372 55285480 -46095041 + MIR3 SINE MIR 74 177 -31 384 338 191 0 chr15 55286855 55287065 -46093456 + MIR SINE MIR 9 258 -4 273 313 54 34 chr15 55287089 55287236 -46093285 - MIR3 SINE MIR -43 165 16 1121 129 51 6 chr15 55287277 55287455 -46093066 + MER5A DNA MER1_type 1 186 -3 324 209 116 12 chr15 55287620 55287706 -46092815 + MER5B DNA MER1_type 1 95 -83 369 0 0 0 chr15 55288070 55288111 -46092410 + (TG)n Simple_repeat Simple_repeat 2 42 0 802 211 7 0 chr15 55288120 55288262 -46092259 - FRAM SINE Alu -30 146 4 1900 181 3 0 chr15 55288901 55289199 -46091322 - AluJb SINE Alu -13 299 1 39 0 0 0 chr15 55289383 55289422 -46091099 + AT_rich Low_complexity Low_complexity 1 39 0 1720 112 4 12 chr15 55289565 55289815 -46090706 - AluY SINE Alu -10 301 54 2209 124 0 34 chr15 55290092 55290415 -46090106 - AluSx SINE Alu 0 312 1 2316 119 0 3 chr15 55290955 55291265 -46089256 + AluSx SINE Alu 1 309 -3 1959 145 0 7 chr15 55291273 55291562 -46088959 + AluSx SINE Alu 14 300 -12 40 67 0 0 chr15 55291612 55291687 -46088834 + AT_rich Low_complexity Low_complexity 1 75 0 457 214 179 46 chr15 55291709 55291882 -46088639 - MIR SINE MIR -30 232 37 366 324 18 0 chr15 55292668 55292779 -46087742 - MIR SINE MIR -65 143 31 1658 140 45 21 chr15 55293214 55293500 -46087021 + AluJo SINE Alu 12 304 -8 214 218 103 0 chr15 55293503 55293581 -46086940 - MIR SINE MIR -54 208 123 265 310 143 40 chr15 55294050 55294450 -46086071 + L2 LINE L2 2454 2894 -420 203 273 36 0 chr15 55294809 55294864 -46085657 - MIR SINE MIR 0 262 206 276 305 0 0 chr15 55294870 55294952 -46085569 + MIR SINE MIR 173 254 -8 493 349 38 9 chr15 55294969 55295181 -46085340 - MIR SINE MIR -12 250 33 264 353 92 13 chr15 55295605 55295775 -46084746 + MIR SINE MIR 2 184 -63 666 275 39 43 chr15 55297140 55297198 -46083323 - MIR SINE MIR 0 262 205 2027 161 0 3 chr15 55297198 55297508 -46083013 - AluSx SINE Alu -3 309 1 666 275 39 43 chr15 55297508 55297682 -46082839 - MIR SINE MIR -57 205 31 298 247 229 7 chr15 55298835 55298995 -46081526 + MIR SINE MIR 60 256 -6 221 413 18 0 chr15 55299066 55299175 -46081346 + L2 LINE L2 2940 3050 -222 198 0 0 0 chr15 55299239 55299261 -46081260 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 2128 138 0 7 chr15 55299268 55299565 -46080956 - AluSx SINE Alu -17 295 1 1435 114 50 0 chr15 55299583 55299802 -46080719 - MER30 DNA MER1_type 0 230 1 768 265 62 80 chr15 55300151 55300491 -46080030 + L1MC4a LINE L1 5506 5838 -1970 1924 138 30 10 chr15 55300491 55300795 -46079726 + AluSx SINE Alu 1 310 -2 768 265 62 80 chr15 55300795 55300891 -46079630 + L1MC4a LINE L1 5838 5934 -1874 221 225 150 12 chr15 55301291 55301371 -46079150 + L2 LINE L2 1705 1795 -1519 305 243 87 10 chr15 55301435 55301538 -46078983 + MIR SINE MIR 98 208 -54 244 242 77 33 chr15 55301726 55301817 -46078704 - LTR39 LTR ERV1 -103 680 586 231 304 0 0 chr15 55303418 55303474 -46077047 - L2 LINE L2 -1 3312 3257 * 902 212 20 78 chr15 55303444 55303699 -46076822 - MIR SINE MIR -21 241 2 339 322 117 37 chr15 55303792 55304342 -46076179 - L2 LINE L2 -236 3036 2443 202 330 85 0 chr15 55304451 55304569 -46075952 + L2 LINE L2 2911 3038 -234 245 300 100 0 chr15 55304599 55304679 -46075842 - MIR SINE MIR -69 193 106 365 286 18 0 chr15 55305246 55305358 -46075163 + MER81 DNA DNA 1 114 0 333 241 76 13 chr15 55305483 55305562 -46074959 + L2 LINE L2 3186 3269 -3 583 312 29 19 chr15 55306178 55306383 -46074138 + MIR SINE MIR 56 262 0 455 293 11 69 chr15 55306829 55306958 -46073563 + MIR3 SINE MIR 21 139 -69 1559 171 25 0 chr15 55306958 55307244 -46073277 + AluSq SINE Alu 1 293 -20 455 293 11 69 chr15 55307244 55307288 -46073233 + MIR3 SINE MIR 139 184 -24 270 297 16 0 chr15 55307362 55307426 -46073095 - L2 LINE L2 -3 3269 3205 198 310 69 23 chr15 55307885 55307972 -46072549 + MIR SINE MIR 102 192 -70 2569 186 100 61 chr15 55308248 55308948 -46071573 - LTR8A LTR ERV1 0 727 1 323 308 77 33 chr15 55308985 55309167 -46071354 - MIR SINE MIR -21 241 52 542 313 56 13 chr15 55310238 55310471 -46070050 + MIR SINE MIR 2 244 -18 396 290 161 5 chr15 55311377 55311563 -46068958 - MIR SINE MIR -2 260 46 248 242 57 6 chr15 55312440 55312597 -46067924 + (TA)n Simple_repeat Simple_repeat 2 166 0 272 250 40 7 chr15 55312616 55312768 -46067753 + (TA)n Simple_repeat Simple_repeat 2 158 0 924 210 113 68 chr15 55312986 55313337 -46067184 - MLT1F LTR MaLR -183 384 1 194 295 49 16 chr15 55313394 55313455 -46067066 + MIR SINE MIR 89 151 -111 395 234 32 48 chr15 55314088 55314212 -46066309 + MIR3 SINE MIR 5 126 -82 867 226 116 10 chr15 55314480 55314679 -46065842 - MIR SINE MIR -4 258 39 1121 172 37 28 chr15 55315083 55315298 -46065223 + MER20 DNA MER1_type 1 217 -2 253 308 31 0 chr15 55315376 55315441 -46065080 + L2 LINE L2 3186 3252 -20 204 188 0 0 chr15 55315443 55315475 -46065046 + polypurine Low_complexity Low_complexity 4 35 0 382 132 0 0 chr15 55315730 55315783 -46064738 - AluSx SINE Alu -18 284 232 1229 102 0 0 chr15 55315787 55315954 -46064567 - AluSx SINE Alu -145 167 1 684 223 23 57 chr15 55317098 55317273 -46063248 + MER69A DNA AcHobo 6 174 -3 762 239 13 0 chr15 55317493 55317652 -46062869 - MER5A DNA MER1_type -27 162 2 640 210 41 78 chr15 55317661 55317904 -46062617 + MER106A DNA MER1_type 3 236 0 271 254 16 16 chr15 55317997 55318060 -46062461 + MIR SINE MIR 17 79 -129 184 245 181 21 chr15 55319505 55319599 -46060922 + MIR SINE MIR 111 219 -43 590 332 84 45 chr15 55319632 55320300 -46060221 - L3 LINE CR1 -412 1165 472 267 297 36 36 chr15 55320909 55321020 -46059501 - L3 LINE CR1 -1018 559 449 182 239 0 84 chr15 55323013 55323084 -46057437 - MIR SINE MIR -49 213 149 422 248 128 8 chr15 55323094 55323211 -46057310 - MIR SINE MIR -75 187 57 232 159 0 0 chr15 55323853 55323897 -46056624 + (CA)n Simple_repeat Simple_repeat 2 45 0 776 255 25 25 chr15 55325237 55325441 -46055080 + MIR SINE MIR 59 262 0 320 311 81 0 chr15 55325616 55325764 -46054757 - L3 LINE CR1 -352 1225 1066 2381 118 13 37 chr15 55326750 55327131 -46053390 - THE1C LTR MaLR 0 375 4 431 153 0 12 chr15 55327256 55327341 -46053180 + GA-rich Low_complexity Low_complexity 3 86 0 1551 166 113 98 chr15 55327651 55328109 -46052412 - LTR48B LTR ERV1 0 644 180 327 231 19 67 chr15 55328812 55328916 -46051605 - L2 LINE L2 -1 3271 3173 458 227 173 27 chr15 55329051 55329201 -46051320 + HsTC2c DNA Tc2 167 338 -391 917 250 132 10 chr15 55329248 55329536 -46050985 + HsTC2c DNA Tc2 405 727 -2 453 323 9 10 chr15 55329685 55329891 -46050630 - MIR3 SINE MIR -50 212 9 187 62 0 83 chr15 55330122 55330170 -46050351 + (CATTG)n Simple_repeat Simple_repeat 2 45 0 658 288 106 45 chr15 55330366 55330823 -46049698 + L1ME4a LINE L1 5578 6067 -54 2140 111 0 13 chr15 55330823 55331139 -46049382 - AluSx SINE Alu 0 312 1 658 288 106 45 chr15 55331139 55331164 -46049357 + L1ME4a LINE L1 6067 6089 -32 195 288 100 12 chr15 55331537 55331617 -46048904 - L2 LINE L2 -93 3179 3093 451 305 40 34 chr15 55332883 55333060 -46047461 + MIR SINE MIR 35 212 -50 234 136 0 0 chr15 55333069 55333113 -46047408 + (TAG)n Simple_repeat Simple_repeat 1 44 0 1955 128 0 0 chr15 55333279 55333568 -46046953 + AluSx SINE Alu 1 289 -23 2437 157 107 9 chr15 55333591 55334049 -46046472 - MLT1D LTR MaLR -2 503 1 215 245 20 0 chr15 55334126 55334175 -46046346 - L2 LINE L2 0 3313 3264 204 125 0 0 chr15 55334259 55334291 -46046230 + (TA)n Simple_repeat Simple_repeat 2 33 0 271 310 140 0 chr15 55334321 55334421 -46046100 - MIR3 SINE MIR -23 185 72 194 266 195 9 chr15 55334510 55334623 -46045898 - L2 LINE L2 -829 2485 2352 2934 253 28 22 chr15 55334851 55335811 -46044710 - L1MEc LINE L1 -4811 1585 620 433 299 15 15 chr15 55336605 55336739 -46043782 - MIR3 SINE MIR -71 137 4 189 167 104 21 chr15 55336716 55336764 -46043757 - L3 LINE CR1 -1156 421 370 * 1093 146 4 114 chr15 55336795 55337041 -46043480 - MER20 DNA MER1_type 0 219 1 892 227 79 36 chr15 55337395 55337673 -46042848 + L1ME3 LINE L1 5835 6124 -38 225 94 0 0 chr15 55337680 55337712 -46042809 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 2302 84 0 10 chr15 55337864 55338174 -46042347 + AluY SINE Alu 1 307 -4 231 36 0 0 chr15 55340643 55340671 -46039850 + (TC)n Simple_repeat Simple_repeat 1 28 0 27 0 0 0 chr15 55342345 55342372 -46038149 + AT_rich Low_complexity Low_complexity 1 27 0 1462 189 33 0 chr15 55342374 55342494 -46038027 + AluJo SINE Alu 1 116 -196 198 0 0 0 chr15 55342494 55342516 -46038005 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 1462 189 33 0 chr15 55342516 55342697 -46037824 + AluJo SINE Alu 116 312 0 2118 266 83 38 chr15 55342700 55343920 -46036601 - L1MC4a LINE L1 -743 5403 4885 380 277 339 0 chr15 55344645 55344822 -46035699 - MIR SINE MIR -13 249 13 341 258 52 10 chr15 55344835 55344932 -46035589 + MER5A DNA MER1_type 38 138 -51 408 306 58 12 chr15 55345535 55345724 -46034797 - MIR SINE MIR -65 197 2 438 252 63 24 chr15 55346382 55346509 -46034012 + L2 LINE L2 3168 3299 -14 324 48 0 0 chr15 55346511 55346553 -46033968 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 1089 95 0 0 chr15 55346750 55346897 -46033624 + AluSp/q SINE Alu 156 302 -11 871 161 67 7 chr15 55347103 55347252 -46033269 - MIR SINE MIR -81 181 24 959 142 39 0 chr15 55347253 55347408 -46033113 - AluJb SINE Alu -17 295 135 379 252 0 72 chr15 55348572 55348683 -46031838 + MIR3 SINE MIR 74 176 -32 3231 211 63 3 chr15 55349380 55350108 -46030413 - L1ME1 LINE L1 -74 6092 5321 363 266 32 0 chr15 55352084 55352178 -46028343 + MIR SINE MIR 164 260 -2 447 275 131 29 chr15 55352251 55352625 -46027896 + L1ME4a LINE L1 5629 6040 -81 234 360 67 53 chr15 55352843 55353126 -46027395 - L2 LINE L2 -831 2483 2197 469 273 78 49 chr15 55353706 55353911 -46026610 - L3 LINE CR1 -219 1358 1148 277 303 98 25 chr15 55354032 55354154 -46026367 + L2 LINE L2 3142 3272 0 510 192 30 0 chr15 55354515 55354614 -46025907 - MIR SINE MIR -25 237 136 297 212 172 40 chr15 55355195 55355294 -46025227 - L2 LINE L2 -602 2712 2601 194 319 138 9 chr15 55356278 55356394 -46024127 + L2 LINE L2 2725 2855 -459 211 257 140 73 chr15 55357320 55357456 -46023065 - MIR SINE MIR -10 252 108 821 265 83 73 chr15 55357580 55357889 -46022632 - MLT1J LTR MaLR 0 511 194 411 163 0 23 chr15 55357889 55357975 -46022546 - L1MB8 LINE L1 0 6178 6095 821 265 83 73 chr15 55357975 55358144 -46022377 - MLT1J LTR MaLR -317 194 28 354 309 55 93 chr15 55358364 55358836 -46021685 + L2 LINE L2 2818 3271 -1 1091 193 29 0 chr15 55359000 55359207 -46021314 - MIR SINE MIR -3 259 47 201 256 0 0 chr15 55359216 55359259 -46021262 + L2 LINE L2 3230 3272 0 1868 156 10 0 chr15 55359482 55359790 -46020731 - AluJb SINE Alu -1 311 1 1023 154 11 22 chr15 55360187 55360369 -46020152 + MER20 DNA MER1_type 36 215 -4 326 301 88 30 chr15 55362030 55362238 -46018283 + L2 LINE L2 2798 3019 -253 1965 85 64 7 chr15 55362329 55362610 -46017911 - AluSp SINE Alu -16 297 1 2180 115 0 3 chr15 55363073 55363386 -46017135 - AluSx SINE Alu 0 312 1 1117 184 43 26 chr15 55363929 55364162 -46016359 - AluJo SINE Alu -13 299 63 180 362 0 0 chr15 55365968 55366037 -46014484 + MIR SINE MIR 65 133 -129 365 306 36 9 chr15 55368725 55368836 -46011685 - MIR3 SINE MIR -52 156 43 2388 87 0 0 chr15 55369515 55369826 -46010695 - AluSx SINE Alu -1 311 1 258 185 0 74 chr15 55370036 55370048 -46010473 + MER3 DNA MER1_type 41 48 -161 855 192 62 31 chr15 55370048 55370241 -46010280 - MER3 DNA MER1_type -1 208 10 181 169 31 138 chr15 55370890 55370955 -46009566 - MIR SINE MIR -36 226 169 274 255 9 57 chr15 55371136 55371242 -46009279 + C-rich Low_complexity Low_complexity 2 102 0 200 346 10 30 chr15 55371457 55371558 -46008963 + MIR SINE MIR 21 119 -89 307 315 98 7 chr15 55371714 55371857 -46008664 - MIR SINE MIR -70 192 37 1692 168 11 0 chr15 55372003 55372289 -46008232 + AluJo SINE Alu 1 289 -23 773 157 16 0 chr15 55373304 55373425 -46007096 + FLAM_C SINE Alu 3 125 -18 194 88 0 29 chr15 55373425 55373459 -46007062 + (GGA)n Simple_repeat Simple_repeat 1 33 0 605 216 71 57 chr15 55374413 55374848 -46005673 - LTR33 LTR ERVL 0 521 9 262 289 48 0 chr15 55374902 55374985 -46005536 + MIR SINE MIR 173 259 -3 447 242 180 16 chr15 55375261 55375517 -46005004 - L1ME4a LINE L1 -22 6099 5802 671 280 47 39 chr15 55375518 55375775 -46004746 + MIR SINE MIR 3 261 -1 230 265 103 26 chr15 55375794 55375911 -46004610 - L1ME4a LINE L1 -352 5769 5644 708 242 70 16 chr15 55375939 55376125 -46004396 + MIR SINE MIR 19 214 -48 2379 66 0 3 chr15 55376184 55376489 -46004032 - AluY SINE Alu -7 304 1 2311 89 3 0 chr15 55376871 55377174 -46003347 - AluSc SINE Alu -5 304 1 1584 143 147 23 chr15 55377274 55377574 -46002947 + MER1B DNA MER1_type 1 337 0 335 143 36 0 chr15 55378128 55378184 -46002337 - L2 LINE L2 -1 3312 3255 320 297 130 0 chr15 55378209 55378347 -46002174 - MER117 DNA MER1_type 0 197 42 321 351 27 0 chr15 55378521 55378632 -46001889 - MER5A DNA MER1_type -29 160 47 237 163 0 0 chr15 55379167 55379216 -46001305 + T-rich Low_complexity Low_complexity 1 49 0 2023 117 7 3 chr15 55379272 55379579 -46000942 - AluSq SINE Alu -1 312 5 27 29 0 0 chr15 55379606 55379640 -46000881 + AT_rich Low_complexity Low_complexity 1 34 0 32 43 0 0 chr15 55379801 55379847 -46000674 + AT_rich Low_complexity Low_complexity 1 46 0 1490 186 3 7 chr15 55380232 55380523 -45999998 - AluSc SINE Alu -11 298 9 2133 64 3 41 chr15 55380549 55380844 -45999677 - AluSx SINE Alu -1 311 28 488 277 96 52 chr15 55380844 55381187 -45999334 - L1ME4a LINE L1 -2172 5636 5279 1824 128 7 4 chr15 55381281 55381600 -45998921 - AluSx SINE Alu 0 320 1 314 304 104 0 chr15 55381730 55381950 -45998571 - L1ME4a LINE L1 -1095 5051 4809 198 0 0 0 chr15 55382082 55382104 -45998417 + (A)n Simple_repeat Simple_repeat 1 22 0 552 205 25 33 chr15 55382328 55382450 -45998071 + MIR SINE MIR 80 200 -62 225 65 0 0 chr15 55383210 55383241 -45997280 + (TC)n Simple_repeat Simple_repeat 2 32 0 4920 117 31 54 chr15 55383478 55384355 -45996166 - MER4D LTR ERV1 -4 829 1 200 177 226 0 chr15 55385023 55385085 -45995436 - L2 LINE L2 0 3272 3197 227 254 15 30 chr15 55385594 55385661 -45994860 + MER103 DNA DNA 30 95 -71 463 289 159 0 chr15 55386125 55386332 -45994189 - MIR SINE MIR -7 255 16 207 0 0 0 chr15 55386532 55386555 -45993966 + (TC)n Simple_repeat Simple_repeat 2 24 0 187 252 136 68 chr15 55386566 55386669 -45993852 - MER5A DNA MER1_type -7 182 73 2100 109 3 6 chr15 55386825 55387138 -45993383 + AluSx SINE Alu 1 312 0 236 265 98 20 chr15 55387293 55387395 -45993126 - L3b LINE CR1 -197 1386 1277 237 341 130 0 chr15 55387898 55388021 -45992500 - MIR SINE MIR -70 192 54 581 250 154 0 chr15 55388398 55388554 -45991967 - MER5A DNA MER1_type 0 189 10 227 372 37 14 chr15 55388685 55388849 -45991672 + MIR SINE MIR 4 173 -82 585 276 50 18 chr15 55389116 55389374 -45991147 + L1MC/D LINE L1 5361 5630 -534 1317 80 0 11 chr15 55389418 55389594 -45990927 + AluSc SINE Alu 120 293 -16 960 152 0 0 chr15 55389594 55389759 -45990762 + (TA)n Simple_repeat Simple_repeat 1 165 0 241 167 0 0 chr15 55389762 55389798 -45990723 - L2 LINE L2 -83 3230 3195 299 282 73 8 chr15 55389973 55390097 -45990424 + L1MC/D LINE L1 5716 5847 -1961 474 241 92 29 chr15 55390652 55390826 -45989695 + L3 LINE CR1 1098 1282 -295 21 36 0 0 chr15 55391688 55391716 -45988805 + AT_rich Low_complexity Low_complexity 1 28 0 1959 120 59 45 chr15 55391910 55392268 -45988253 + MLT1A1 LTR MaLR 1 363 -2 277 335 117 5 chr15 55392898 55393086 -45987435 + L1ME LINE L1 5633 5841 -329 316 194 16 0 chr15 55393094 55393156 -45987365 + MER96 DNA MER1_type? 1 63 -112 485 298 141 28 chr15 55393302 55393628 -45986893 - L1M4 LINE L1 -1603 4543 4181 473 137 0 14 chr15 55393658 55393731 -45986790 - AluS SINE Alu -240 73 2 348 292 110 82 chr15 55393732 55393796 -45986725 - L1M4 LINE L1 -2259 3887 3826 2139 88 7 3 chr15 55393796 55394092 -45986429 - AluSc SINE Alu -12 297 1 348 292 110 82 chr15 55394092 55394220 -45986301 - L1M4 LINE L1 -2320 3826 3703 1200 195 75 18 chr15 55394220 55394502 -45986019 - AluSx SINE Alu -4 298 1 348 292 110 82 chr15 55394502 55394664 -45985857 - L1M4 LINE L1 -2443 3703 3522 1383 157 19 88 chr15 55395224 55395405 -45985116 - AluSx SINE Alu -16 296 145 2208 94 13 0 chr15 55395405 55395713 -45984808 - AluSp SINE Alu -1 312 1 1383 157 19 88 chr15 55395713 55395849 -45984672 - AluSx SINE Alu -167 145 1 426 221 16 8 chr15 55396166 55396293 -45984228 + GA-rich Low_complexity Low_complexity 2 129 0 260 222 0 0 chr15 55396339 55396393 -45984128 - MER96 DNA MER1_type? -4 171 118 384 232 122 0 chr15 55396472 55396554 -45983967 + MER96 DNA MER1_type? 84 175 0 464 327 173 25 chr15 55396554 55396958 -45983563 - L1M4 LINE L1 -3010 3136 2673 274 272 9 65 chr15 55397201 55397433 -45983088 - L1M4 LINE L1 -3793 2353 2135 274 288 72 22 chr15 55398178 55398317 -45982204 - HAL1 LINE L1 -933 1574 1429 700 197 0 8 chr15 55398398 55398530 -45981991 - FLAM_C SINE Alu -1 132 2 434 273 100 42 chr15 55399543 55399906 -45980615 - MLT1L LTR MaLR -35 553 165 430 236 164 36 chr15 55400015 55400180 -45980341 - MIR SINE MIR -1 261 76 192 286 32 16 chr15 55400180 55400243 -45980278 - L3 LINE CR1 -542 1035 972 2201 99 0 7 chr15 55400513 55400817 -45979704 + AluSg1 SINE Alu 1 302 -7 309 26 0 0 chr15 55400971 55401009 -45979512 + (TG)n Simple_repeat Simple_repeat 2 39 0 312 165 55 33 chr15 55401159 55401250 -45979271 - L1MC5 LINE L1 -36 7925 7833 470 264 102 89 chr15 55401311 55401626 -45978895 - L1ME4a LINE L1 -11 6110 5792 290 289 72 0 chr15 55401700 55401797 -45978724 + Charlie7 DNA MER1_type 1 104 -2508 241 257 158 13 chr15 55401780 55401932 -45978589 + Charlie7 DNA MER1_type 2434 2607 -5 * 1205 183 119 4 chr15 55401933 55402201 -45978320 + AluJo SINE Alu 1 299 -13 23 0 0 0 chr15 55402687 55402710 -45977811 + AT_rich Low_complexity Low_complexity 1 23 0 212 143 29 0 chr15 55403203 55403238 -45977283 - L2 LINE L2 -12 3301 3266 418 318 76 0 chr15 55404374 55404506 -45976015 + L2 LINE L2 3118 3259 -13 22 56 0 0 chr15 55404805 55404841 -45975680 + AT_rich Low_complexity Low_complexity 1 36 0 891 145 0 0 chr15 55405490 55405621 -45974900 - FLAM_C SINE Alu -2 131 1 2337 214 108 57 chr15 55405639 55406678 -45973843 - L1MC5 LINE L1 -48 7913 6693 180 0 0 0 chr15 55406811 55406831 -45973690 + (TA)n Simple_repeat Simple_repeat 2 21 0 409 262 122 33 chr15 55406837 55407051 -45973470 + L1ME LINE L1 5538 5770 -351 21 0 0 0 chr15 55407205 55407226 -45973295 + AT_rich Low_complexity Low_complexity 1 21 0 1848 122 21 95 chr15 55407226 55407563 -45972958 - AluSx SINE Alu 0 312 1 2073 69 22 100 chr15 55408100 55408420 -45972101 - AluSx SINE Alu -17 295 1 383 270 185 21 chr15 55408469 55408658 -45971863 - HAL1 LINE L1 -2275 232 13 180 77 0 0 chr15 55409595 55409621 -45970900 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 1106 166 83 25 chr15 55412653 55412931 -45967590 - MER33 DNA MER1_type 0 324 31 311 247 193 13 chr15 55412986 55413136 -45967385 + MIR SINE MIR 74 250 -12 614 157 107 8 chr15 55413959 55414080 -45966441 + FLAM_A SINE Alu 1 133 0 231 170 0 0 chr15 55414082 55414129 -45966392 + GA-rich Low_complexity Low_complexity 4 50 0 22 0 0 0 chr15 55414225 55414247 -45966274 + AT_rich Low_complexity Low_complexity 1 22 0 304 306 115 25 chr15 55414809 55414966 -45965555 - L1ME4a LINE L1 -50 6071 5901 538 196 0 0 chr15 55415049 55415151 -45965370 - U13 snRNA snRNA -2 102 1 281 225 28 0 chr15 55416016 55416087 -45964434 - L1MC4 LINE L1 -1 8041 7969 2028 127 7 0 chr15 55416096 55416404 -45964117 + AluSx SINE Alu 1 310 -2 2219 232 98 7 chr15 55416424 55417023 -45963498 - L1MC4 LINE L1 -151 7891 7238 21 0 0 0 chr15 55417056 55417077 -45963444 + AT_rich Low_complexity Low_complexity 1 21 0 822 141 59 0 chr15 55417093 55417228 -45963293 - L1MC4 LINE L1 -1097 6945 6803 185 192 0 39 chr15 55417515 55417567 -45962954 + (CATA)n Simple_repeat Simple_repeat 2 51 0 460 228 44 22 chr15 55417820 55417956 -45962565 - Charlie8 DNA MER1_type -2254 163 25 404 311 74 7 chr15 55418217 55418365 -45962156 - MER20B DNA MER1_type -622 161 4 207 0 0 0 chr15 55418792 55418815 -45961706 + (A)n Simple_repeat Simple_repeat 1 23 0 2101 132 3 0 chr15 55418995 55419298 -45961223 + AluSx SINE Alu 1 304 -8 1258 210 48 28 chr15 55419664 55419955 -45960566 - AluJo SINE Alu -15 297 1 265 296 49 12 chr15 55420537 55420618 -45959903 - L2 LINE L2 -2 3270 3187 249 347 50 0 chr15 55420912 55421033 -45959488 - L3b LINE CR1 -86 1497 1371 566 206 53 38 chr15 55421626 55421757 -45958764 - MER5A DNA MER1_type -55 134 2 1531 197 69 3 chr15 55421763 55422083 -45958438 - MER58B DNA MER1_type 0 341 1 485 229 271 7 chr15 55422092 55422232 -45958289 - MER5B DNA MER1_type -1 177 1 341 179 325 8 chr15 55422300 55422423 -45958098 + MER103 DNA DNA 3 164 -2 180 347 121 32 chr15 55423948 55424072 -45956449 - MIR3 SINE MIR -73 135 1 276 100 0 0 chr15 55424424 55424464 -45956057 + (CA)n Simple_repeat Simple_repeat 2 41 0 224 359 11 11 chr15 55424733 55424825 -45955696 + L3 LINE CR1 594 685 -892 24 32 0 0 chr15 55426444 55426475 -45954046 + AT_rich Low_complexity Low_complexity 1 31 0 8056 186 24 9 chr15 55427078 55428750 -45951771 + L1M2a LINE L1 676 2469 -4699 736 190 0 0 chr15 55428750 55428871 -45951650 + AluJb SINE Alu 1 121 -191 1577 163 87 17 chr15 55428948 55429236 -45951285 + AluSx SINE Alu 5 312 0 2186 149 25 159 chr15 55429277 55429887 -45950634 + L1M2a LINE L1 2593 3283 -3885 216 0 0 0 chr15 55429887 55429911 -45950610 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2438 75 0 0 chr15 55429913 55430218 -45950303 + AluY SINE Alu 1 305 -6 2186 149 25 159 chr15 55430218 55430329 -45950192 + L1M2a LINE L1 3096 3220 -3948 527 136 23 11 chr15 55430380 55430468 -45950053 - FLAM SINE Alu -17 126 38 5287 192 30 29 chr15 55430476 55430647 -45949874 + L1M2a LINE L1 3232 3401 -3766 2205 107 3 0 chr15 55430647 55430938 -45949583 + AluSx SINE Alu 1 292 -20 5287 192 30 29 chr15 55430938 55431747 -45948774 + L1M2a LINE L1 3401 4217 -2950 2340 100 0 3 chr15 55431747 55432056 -45948465 + AluY SINE Alu 1 308 -3 5287 192 30 29 chr15 55432056 55432373 -45948148 + L1M2a LINE L1 4217 4532 -2635 3957 158 68 19 chr15 55432409 55433215 -45947306 + L1M2a LINE L1 5089 5934 -1233 2207 4 0 0 chr15 55433315 55433553 -45946968 - AluYb8 SINE Alu -80 238 1 1574 121 4 4 chr15 55433644 55433875 -45946646 + AluJb SINE Alu 79 309 -3 343 294 217 14 chr15 55434316 55434459 -45946062 + MIR3 SINE MIR 10 181 -27 730 222 58 94 chr15 55434591 55435122 -45945399 - L1MC5 LINE L1 -50 7911 7400 203 406 56 22 chr15 55435390 55435570 -45944951 - MIR3 SINE MIR -2 206 21 3229 100 0 6 chr15 55436113 55436582 -45943939 + L1PA8 LINE L1 5707 6172 0 2242 96 0 10 chr15 55436589 55436901 -45943620 + AluSc SINE Alu 1 309 0 21 36 0 0 chr15 55437043 55437071 -45943450 + AT_rich Low_complexity Low_complexity 1 28 0 1548 160 0 4 chr15 55437194 55437438 -45943083 - AluJo SINE Alu -69 243 1 5100 189 38 18 chr15 55437735 55438949 -45941572 + L1MD2 LINE L1 5113 6357 -2 2168 160 16 30 chr15 55439169 55439606 -45940915 + L1MB4 LINE L1 5750 6180 0 1366 220 113 27 chr15 55439610 55440019 -45940502 + L1ME2 LINE L1 5698 6141 -23 374 298 37 64 chr15 55440067 55440285 -45940236 + L1MC4 LINE L1 7830 8041 -1 300 242 150 39 chr15 55442228 55442381 -45938140 - L1ME4a LINE L1 -56 6065 5896 1823 119 28 32 chr15 55442386 55442671 -45937850 - AluJo SINE Alu -20 292 9 187 255 104 75 chr15 55443163 55443269 -45937252 + L2 LINE L2 3190 3298 -15 2110 137 55 73 chr15 55443453 55443890 -45936631 + MSTB1 LTR MaLR 4 432 0 192 40 0 0 chr15 55444112 55444137 -45936384 + (CAG)n Simple_repeat Simple_repeat 2 26 0 281 234 0 0 chr15 55444142 55444206 -45936315 + MER5A DNA MER1_type 49 112 -77 305 233 33 33 chr15 55444829 55444949 -45935572 + L1MC5 LINE L1 7624 7743 -218 616 242 118 0 chr15 55445050 55445211 -45935310 + MER58C DNA MER1_type 36 215 0 352 203 110 68 chr15 55445480 55445598 -45934923 - L2 LINE L2 0 3313 3191 222 329 0 26 chr15 55446499 55446575 -45933946 + GA-rich Low_complexity Low_complexity 4 77 0 274 243 63 36 chr15 55446581 55446636 -45933885 + L1MC4 LINE L1 7928 7980 -62 2224 105 31 0 chr15 55446636 55446930 -45933591 + AluSx SINE Alu 2 304 -8 274 243 63 36 chr15 55446930 55446985 -45933536 + L1MC4 LINE L1 7980 8041 -1 1771 95 37 0 chr15 55447670 55447911 -45932610 + AluY SINE Alu 62 311 0 2121 128 0 0 chr15 55448601 55448898 -45931623 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr15 55450318 55450339 -45930182 + AT_rich Low_complexity Low_complexity 1 21 0 505 296 65 16 chr15 55450344 55450530 -45929991 + MIR SINE MIR 7 201 -61 2112 62 0 0 chr15 55450988 55451247 -45929274 + AluY SINE Alu 49 307 -4 639 147 0 9 chr15 55451362 55451471 -45929050 + L1MC3 LINE L1 7346 7453 -332 385 172 108 21 chr15 55451459 55451552 -45928969 + L1MC2 LINE L1 6231 6331 -13 * 1000 205 5 0 chr15 55451768 55451953 -45928568 - MER5A DNA MER1_type -2 187 2 2234 91 7 0 chr15 55454791 55455087 -45925434 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr15 55455787 55455809 -45924712 + AT_rich Low_complexity Low_complexity 1 22 0 322 254 191 0 chr15 55455929 55456055 -45924466 + MER103 DNA DNA 1 150 -16 1642 157 7 16 chr15 55456823 55457128 -45923393 - AluSx SINE Alu 0 312 11 1911 128 7 4 chr15 55457320 55457639 -45922882 + AluSx SINE Alu 1 320 0 725 283 64 54 chr15 55457770 55458076 -45922445 + L1MC/D LINE L1 5318 5619 -2189 1858 97 7 57 chr15 55458076 55458376 -45922145 + AluSx SINE Alu 28 312 0 2280 89 0 23 chr15 55458385 55458689 -45921832 + AluSc SINE Alu 1 297 -12 725 283 64 54 chr15 55458689 55458873 -45921648 + L1MC/D LINE L1 5626 5823 -1985 244 184 0 0 chr15 55458873 55458911 -45921610 + Alu SINE Alu 1 38 -263 417 185 46 37 chr15 55458911 55459019 -45921502 + AluJo/FRAM SINE Alu 196 304 -8 2229 103 6 3 chr15 55459340 55459651 -45920870 + AluSq SINE Alu 1 312 -1 279 122 0 0 chr15 55459707 55459756 -45920765 + (A)n Simple_repeat Simple_repeat 1 49 0 323 350 29 7 chr15 55460291 55460431 -45920090 + MER5A DNA MER1_type 47 189 0 288 309 0 0 chr15 55460450 55460544 -45919977 + MER5A DNA MER1_type 14 107 -82 441 301 15 7 chr15 55460937 55461073 -45919448 - L2 LINE L2 0 3272 3136 616 183 44 7 chr15 55461096 55461233 -45919288 + MER96B DNA MER1_type? 1 142 -275 750 219 26 0 chr15 55461233 55461388 -45919133 + AluJb SINE Alu 117 275 -37 1652 189 36 0 chr15 55461389 55461670 -45918851 + AluJb SINE Alu 1 291 -21 451 80 0 80 chr15 55461674 55461749 -45918772 + MER96B DNA MER1_type? 163 231 -186 681 252 7 7 chr15 55461982 55462137 -45918384 + MER5B DNA MER1_type 4 158 -20 1111 191 5 10 chr15 55462142 55462346 -45918175 + AluJo SINE Alu 87 289 -23 31 0 0 0 chr15 55462346 55462377 -45918144 + AT_rich Low_complexity Low_complexity 1 31 0 776 308 75 61 chr15 55462401 55463222 -45917299 - L2 LINE L2 -430 2884 2052 2387 90 0 0 chr15 55464602 55464903 -45915618 - AluSx SINE Alu -11 301 1 208 254 119 0 chr15 55465015 55465074 -45915447 + L2 LINE L2 2997 3062 -210 489 273 36 36 chr15 55465115 55465309 -45915212 - L2 LINE L2 -7 3306 3113 387 321 106 57 chr15 55466863 55467623 -45912898 + L2 LINE L2 2462 3250 -22 2285 78 16 13 chr15 55467623 55467930 -45912591 - AluY SINE Alu 0 311 4 1791 148 17 17 chr15 55467937 55468227 -45912294 - AluJo SINE Alu -22 290 1 500 213 8 8 chr15 55468443 55468565 -45911956 + L1MA9 LINE L1 6153 6274 -38 745 278 94 31 chr15 55469073 55469588 -45910933 - L1MDb LINE L1 -3621 2785 2284 367 302 117 38 chr15 55469904 55470353 -45910168 - L1MDb LINE L1 -4738 1849 1213 328 307 10 10 chr15 55470394 55470495 -45910026 - L1MDb LINE L1 -5180 1229 1129 205 220 20 0 chr15 55471106 55471156 -45909365 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 21 0 0 0 chr15 55471156 55471177 -45909344 + AT_rich Low_complexity Low_complexity 1 21 0 306 197 0 0 chr15 55471422 55471483 -45909038 - L1M LINE L1 -807 5357 5297 14881 152 27 16 chr15 55471485 55474758 -45905763 - L1MA2 LINE L1 0 7723 4486 1572 207 3 0 chr15 55474758 55475053 -45905468 - AluJo SINE Alu -16 296 1 14881 152 27 16 chr15 55475053 55475570 -45904951 - L1MA2 LINE L1 -3237 4486 3976 2018 171 54 20 chr15 55475570 55475979 -45904542 - MSTA LTR MaLR -1 427 5 14881 152 27 16 chr15 55475979 55476050 -45904471 - L1MA2 LINE L1 -3747 3976 3907 459 28 14 28 chr15 55476050 55476121 -45904400 + (TA)n Simple_repeat Simple_repeat 2 71 0 2150 131 0 3 chr15 55476124 55476429 -45904092 - AluSq SINE Alu -9 304 1 14881 152 27 16 chr15 55476429 55478241 -45902280 - L1MA2 LINE L1 -3817 3906 1977 3945 257 75 60 chr15 55478245 55479432 -45901089 - L1M4 LINE L1 -818 5328 4161 405 67 0 0 chr15 55479432 55479492 -45901029 + Alu SINE Alu 241 300 -12 3945 257 75 60 chr15 55479492 55479930 -45900591 - L1M4 LINE L1 -1985 4161 3615 2200 90 13 13 chr15 55479930 55480229 -45900292 - AluY SINE Alu -12 299 1 3945 257 75 60 chr15 55480229 55480257 -45900264 - L1M4 LINE L1 -2531 3615 3589 808 240 0 22 chr15 55480381 55480560 -45899961 - AluJb SINE Alu -2 310 136 303 229 55 0 chr15 55480576 55480685 -45899836 - L1MEc LINE L1 -4025 2371 2257 461 155 0 0 chr15 55480703 55480774 -45899747 - FLAM_A SINE Alu -27 115 45 457 244 85 15 chr15 55480774 55480975 -45899546 - L1MEc LINE L1 -4125 2271 2057 985 194 63 29 chr15 55480990 55481196 -45899325 - MER58A DNA MER1_type -9 215 3 1604 284 68 15 chr15 55481197 55481946 -45898575 - L1MEc LINE L1 -4331 2065 1277 1493 289 101 44 chr15 55481969 55482544 -45897977 - L1MEc LINE L1 -5226 1170 629 1479 184 0 46 chr15 55482544 55482848 -45897673 - AluJo SINE Alu -22 290 1 1493 289 101 44 chr15 55482848 55483347 -45897174 - L1MEc LINE L1 -5767 629 35 611 316 60 35 chr15 55483443 55484121 -45896400 - L1M4 LINE L1 -1172 4974 4280 243 305 9 57 chr15 55484144 55484249 -45896272 + L2 LINE L2 2555 2654 -660 399 359 129 46 chr15 55484283 55484609 -45895912 + L2 LINE L2 2916 3268 -4 250 246 18 0 chr15 55484939 55484996 -45895525 + MER81 DNA DNA 57 114 0 21 36 0 0 chr15 55485006 55485034 -45895487 + AT_rich Low_complexity Low_complexity 1 28 0 183 298 64 0 chr15 55485503 55485550 -45894971 - L2 LINE L2 -13 3300 3251 200 215 8 157 chr15 55485795 55485916 -45894605 + L2 LINE L2 7 109 -3205 1454 270 95 72 chr15 55485940 55486688 -45893833 + L2 LINE L2 550 1314 -2000 1226 149 57 34 chr15 55486690 55486952 -45893569 - Tigger6 DNA MER2_type 0 1597 1330 284 328 69 0 chr15 55488370 55488486 -45892035 + L2 LINE L2 3190 3313 0 208 262 135 64 chr15 55488763 55488904 -45891617 + L2 LINE L2 2997 3147 -166 961 265 82 20 chr15 55489920 55490320 -45890201 + L1ME1 LINE L1 5734 6158 -8 535 237 116 70 chr15 55490500 55490829 -45889692 + L1ME4a LINE L1 5538 5881 -240 22 35 0 0 chr15 55491001 55491030 -45889491 + AT_rich Low_complexity Low_complexity 1 29 0 288 336 33 16 chr15 55491079 55491201 -45889320 - MIR3 SINE MIR -6 202 79 743 171 8 8 chr15 55491793 55491922 -45888599 + AluJo SINE Alu 1 129 -183 216 0 0 0 chr15 55492988 55493012 -45887509 + (A)n Simple_repeat Simple_repeat 1 24 0 331 297 0 0 chr15 55493030 55493121 -45887400 + GA-rich Low_complexity Low_complexity 2 92 0 207 194 0 0 chr15 55493344 55493380 -45887141 + (CAGA)n Simple_repeat Simple_repeat 4 39 0 21 36 0 0 chr15 55493647 55493675 -45886846 + AT_rich Low_complexity Low_complexity 1 28 0 231 170 0 0 chr15 55493732 55493779 -45886742 + (TA)n Simple_repeat Simple_repeat 1 47 0 2471 69 3 0 chr15 55493931 55494234 -45886287 - AluY SINE Alu -7 304 1 1989 65 0 50 chr15 55495109 55495388 -45885133 + AluSc SINE Alu 1 265 -44 23 0 0 0 chr15 55495503 55495526 -45884995 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr15 55496208 55496229 -45884292 + AT_rich Low_complexity Low_complexity 1 21 0 471 278 6 37 chr15 55496457 55496619 -45883902 + MIR SINE MIR 96 252 -10 186 103 0 0 chr15 55496621 55496650 -45883871 + (CTA)n Simple_repeat Simple_repeat 1 29 0 626 229 51 0 chr15 55496716 55496873 -45883648 + MER58B DNA MER1_type 39 203 -138 870 205 0 0 chr15 55496873 55497029 -45883492 + AluJo SINE Alu 135 290 -22 679 226 30 18 chr15 55497036 55497200 -45883321 + MER58B DNA MER1_type 172 337 -4 235 234 16 0 chr15 55499544 55499608 -45880913 - L1MCa LINE L1 -4356 2070 2006 241 244 13 51 chr15 55499745 55499823 -45880698 + L2 LINE L2 3181 3255 -17 1902 155 0 13 chr15 55499841 55500145 -45880376 + AluSx SINE Alu 12 311 -1 1910 159 0 0 chr15 55500413 55500722 -45879799 - AluJo SINE Alu -3 309 1 1547 181 26 16 chr15 55501109 55501412 -45879109 - AluJo SINE Alu -6 306 1 25 31 0 0 chr15 55502661 55502693 -45877828 + AT_rich Low_complexity Low_complexity 1 32 0 272 274 44 53 chr15 55503327 55503440 -45877081 + MIR SINE MIR 119 230 -32 485 266 44 38 chr15 55503664 55503822 -45876699 + L1MD2 LINE L1 5506 5664 -2144 2154 132 7 0 chr15 55503881 55504184 -45876337 + AluSx SINE Alu 1 305 -7 1694 134 46 73 chr15 55504200 55504528 -45875993 + MER2 DNA MER2_type 2 320 -25 1436 241 74 44 chr15 55504535 55505257 -45875264 + MER21B LTR ERV1 17 758 -105 22 0 0 0 chr15 55505402 55505424 -45875097 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr15 55505451 55505481 -45875040 + AT_rich Low_complexity Low_complexity 1 30 0 2197 92 0 7 chr15 55505481 55505790 -45874731 + AluY SINE Alu 1 307 0 426 39 0 0 chr15 55505847 55505899 -45874622 + (TA)n Simple_repeat Simple_repeat 2 53 0 503 362 33 40 chr15 55506191 55506685 -45873836 + L1ME2 LINE L1 5 684 -5712 1919 240 61 7 chr15 55507983 55508538 -45871983 + L1MD2 LINE L1 5773 6357 -2 772 182 0 28 chr15 55508551 55508694 -45871827 + FLAM_C SINE Alu 5 143 0 211 169 0 34 chr15 55508961 55509020 -45871501 + GA-rich Low_complexity Low_complexity 5 61 0 378 261 113 54 chr15 55509020 55509068 -45871453 + L1ME2 LINE L1 879 923 -5473 189 0 0 0 chr15 55509068 55509089 -45871432 + (TA)n Simple_repeat Simple_repeat 2 22 0 378 261 113 54 chr15 55509089 55509505 -45871016 + L1ME2 LINE L1 923 1529 -4867 2058 121 3 3 chr15 55509505 55509795 -45870726 + AluSx SINE Alu 1 290 -22 378 261 113 54 chr15 55509795 55509907 -45870614 + L1ME2 LINE L1 1529 1633 -4763 1869 255 115 5 chr15 55509915 55510669 -45869852 + L1ME2 LINE L1 3355 4191 -2024 2320 93 26 0 chr15 55511975 55512277 -45868244 - AluSx SINE Alu -2 310 1 219 307 7 21 chr15 55512684 55512824 -45867697 + CT-rich Low_complexity Low_complexity 1 138 0 1332 223 115 95 chr15 55513677 55514457 -45866064 + L1ME2 LINE L1 4810 5706 -527 301 153 14 83 chr15 55514457 55514473 -45866048 + Alu SINE Alu 1 17 -282 1698 164 3 10 chr15 55514473 55514778 -45865743 + AluSq SINE Alu 1 303 -10 301 153 14 83 chr15 55514778 55514833 -45865688 + Alu SINE Alu 17 52 -247 1332 223 115 95 chr15 55514833 55515348 -45865173 + L1ME2 LINE L1 5706 6210 -23 1633 151 21 21 chr15 55516031 55516142 -45864379 + AluSx SINE Alu 25 135 -177 1987 140 3 7 chr15 55516142 55516449 -45864072 + AluSq SINE Alu 1 306 -7 1633 151 21 21 chr15 55516449 55516616 -45863905 + AluSx SINE Alu 134 303 -9 1847 177 10 3 chr15 55516760 55517071 -45863450 - AluSq SINE Alu 0 313 1 10689 178 103 51 chr15 55517104 55518609 -45861912 + L1M2 LINE L1 328 1754 -5094 1770 166 0 14 chr15 55518609 55518898 -45861623 + AluJb SINE Alu 14 298 -14 10689 178 103 51 chr15 55518898 55519783 -45860738 + L1M2 LINE L1 1754 2592 -4256 1601 182 6 59 chr15 55519783 55520107 -45860414 + AluJb SINE Alu 1 307 -5 10689 178 103 51 chr15 55520107 55521047 -45859474 + L1M2 LINE L1 2592 3857 -2991 1455 194 44 14 chr15 55521047 55521341 -45859180 + AluJo SINE Alu 10 312 0 10689 178 103 51 chr15 55521341 55521463 -45859058 + L1M2 LINE L1 3857 3971 -2877 2395 205 32 61 chr15 55521459 55522616 -45857905 + L1PA16 LINE L1 5198 6007 -159 5518 124 5 13 chr15 55521656 55522130 -45858391 + L1MA4A LINE L1 5354 5819 -484 2183 124 0 0 chr15 55522130 55522436 -45858085 + AluSx SINE Alu 1 306 -6 5518 124 5 13 chr15 55522436 55522903 -45857618 + L1MA4A LINE L1 5819 6288 -15 29 28 0 0 chr15 55522903 55522939 -45857582 + AT_rich Low_complexity Low_complexity 1 36 0 1322 176 33 46 chr15 55523577 55523906 -45856615 + L1MB4 LINE L1 5570 5894 -286 782 129 153 2 chr15 55523937 55524232 -45856289 + MSTA LTR MaLR 1 406 -22 496 110 0 0 chr15 55524226 55524299 -45856222 - 7SK RNA RNA 0 193 121 * 700 150 0 16 chr15 55524336 55524463 -45856058 - 7SK RNA RNA -68 125 1 293 95 0 0 chr15 55524463 55524505 -45856016 + MSTA LTR MaLR 387 428 0 1097 132 123 5 chr15 55524506 55524725 -45855796 + L1MB4 LINE L1 5872 6116 -64 242 82 204 0 chr15 55524824 55524873 -45855648 + L1MB4 LINE L1 6121 6179 -1 187 333 0 13 chr15 55525040 55525118 -45855403 - MIR SINE MIR -40 222 146 21 0 0 0 chr15 55525490 55525511 -45855010 + AT_rich Low_complexity Low_complexity 1 21 0 1648 166 80 0 chr15 55526057 55526370 -45854151 + MER44D DNA MER2_type 2 609 0 275 265 10 41 chr15 55526889 55526987 -45853534 + GA-rich Low_complexity Low_complexity 5 99 0 2357 108 0 0 chr15 55527038 55527344 -45853177 + AluSg SINE Alu 1 306 -4 2117 129 0 3 chr15 55527410 55527720 -45852801 + AluSx SINE Alu 1 309 -3 2166 136 0 0 chr15 55528104 55528412 -45852109 + AluSx SINE Alu 1 308 -4 1283 171 9 14 chr15 55528698 55528920 -45851601 + AluJo SINE Alu 10 230 -82 2233 114 0 3 chr15 55529766 55530073 -45850448 + AluSx SINE Alu 1 306 -6 1862 106 16 4 chr15 55530310 55530564 -45849957 + AluSc SINE Alu 1 257 -52 187 256 0 0 chr15 55530929 55530968 -45849553 + L2 LINE L2 3259 3297 -16 316 207 37 37 chr15 55531672 55531754 -45848767 - MIR3 SINE MIR -14 194 113 1342 166 136 19 chr15 55532582 55532847 -45847674 + AluJo SINE Alu 1 296 -16 1950 103 0 33 chr15 55532847 55533149 -45847372 + AluY SINE Alu 1 292 -19 1813 161 0 20 chr15 55533419 55533717 -45846804 - AluJb SINE Alu -19 293 2 2185 91 27 3 chr15 55534120 55534416 -45846105 - AluSc SINE Alu -6 303 1 363 44 0 0 chr15 55534596 55534641 -45845880 + (CA)n Simple_repeat Simple_repeat 2 46 0 209 162 18 90 chr15 55535001 55535112 -45845409 + A-rich Low_complexity Low_complexity 1 103 0 2164 117 24 0 chr15 55535453 55535743 -45844778 + AluSx SINE Alu 1 297 -15 425 265 103 15 chr15 55537257 55537393 -45843128 + MIR SINE MIR 92 239 -23 335 216 0 0 chr15 55538242 55538316 -45842205 - L1M4 LINE L1 -2114 4032 3959 789 189 0 0 chr15 55538329 55538509 -45842012 + FLAM_C SINE Alu 1 180 0 1002 252 93 3 chr15 55538511 55538864 -45841657 - L1M4 LINE L1 -2195 3951 3567 * 1926 236 45 26 chr15 55538852 55539357 -45841164 - L1MEc LINE L1 -5749 647 128 2292 111 0 0 chr15 55539357 55539654 -45840867 + AluSq SINE Alu 2 298 -15 1926 236 45 26 chr15 55539654 55539732 -45840789 - L1MEc LINE L1 -6268 128 53 366 314 45 70 chr15 55539887 55539929 -45840592 + MIR SINE MIR 14 56 -206 561 178 8 0 chr15 55539929 55540047 -45840474 + L1MB2 LINE L1 6053 6171 0 366 314 45 70 chr15 55540047 55540246 -45840275 + MIR SINE MIR 56 249 -13 295 192 100 108 chr15 55540359 55540479 -45840042 + MIR SINE MIR 48 166 -96 2240 85 0 3 chr15 55540684 55541015 -45839506 - AluY SINE Alu 0 330 1 1396 149 20 143 chr15 55541917 55542060 -45838461 + AluJo SINE Alu 1 160 -142 2111 133 0 0 chr15 55542060 55542353 -45838168 + AluSq SINE Alu 1 293 -20 1396 149 20 143 chr15 55542353 55542372 -45838149 + AluJo SINE Alu 160 180 -122 2147 124 0 6 chr15 55542372 55542687 -45837834 + AluSq SINE Alu 1 313 0 1396 149 20 143 chr15 55542687 55542866 -45837655 + AluJo SINE Alu 180 301 -1 513 196 60 60 chr15 55542900 55543033 -45837488 - MER63A DNA MER1_type -18 192 60 2110 141 0 3 chr15 55543041 55543347 -45837174 - AluJb SINE Alu -7 305 1 2060 104 0 61 chr15 55543718 55544045 -45836476 + AluSq SINE Alu 1 307 -6 721 172 0 0 chr15 55544264 55544380 -45836141 + AluJo/FLAM SINE Alu 1 116 -186 1040 91 0 0 chr15 55544381 55544513 -45836008 + AluSg/x SINE Alu 172 303 -9 941 292 44 31 chr15 55544764 55545219 -45835302 + L1MEc LINE L1 498 958 -5763 1910 149 7 3 chr15 55545226 55545530 -45834991 + AluJo SINE Alu 3 307 0 23 54 0 0 chr15 55545532 55545569 -45834952 + AT_rich Low_complexity Low_complexity 1 37 0 1443 178 38 55 chr15 55545569 55545862 -45834659 + AluJo SINE Alu 6 293 -19 27 0 0 0 chr15 55545862 55545889 -45834632 + AT_rich Low_complexity Low_complexity 1 27 0 1167 255 77 63 chr15 55545891 55546636 -45833885 + L1MEc LINE L1 1669 2474 -4247 1777 131 0 11 chr15 55546636 55546910 -45833611 + AluSx SINE Alu 39 309 -3 1167 255 77 63 chr15 55546910 55547034 -45833487 + L1MEc LINE L1 2474 2595 -4126 801 231 13 6 chr15 55547036 55547192 -45833329 + FAM SINE Alu 1 157 -18 318 50 0 0 chr15 55547195 55547235 -45833286 + (GGGGA)n Simple_repeat Simple_repeat 5 44 0 237 229 0 0 chr15 55547235 55547283 -45833238 + GA-rich Low_complexity Low_complexity 2 49 0 1317 195 10 55 chr15 55547329 55547494 -45833027 - AluJo SINE Alu -18 294 146 2239 118 3 13 chr15 55547494 55547808 -45832713 - AluSx SINE Alu -1 311 1 1317 195 10 55 chr15 55547808 55547934 -45832587 - AluJo SINE Alu -166 146 16 603 256 143 19 chr15 55547959 55548330 -45832191 + L1MEc LINE L1 2595 3011 -3529 980 176 90 4 chr15 55548352 55548597 -45831924 + L1MEc LINE L1 3070 3335 -3205 593 187 52 19 chr15 55548590 55548745 -45831776 + L1ME1 LINE L1 6002 6161 -5 * 23 0 0 0 chr15 55548754 55548777 -45831744 + AT_rich Low_complexity Low_complexity 1 23 0 692 164 30 45 chr15 55548779 55548913 -45831608 + FLAM_C SINE Alu 1 132 -1 868 130 0 43 chr15 55549394 55549532 -45830989 + FLAM_C SINE Alu 2 133 0 376 254 127 36 chr15 55549699 55549864 -45830657 + MER5A DNA MER1_type 10 189 0 798 154 89 134 chr15 55549911 55549999 -45830522 + MER46A DNA MER2_type 1 91 -2640 2021 125 16 0 chr15 55549999 55550303 -45830218 + AluSx SINE Alu 1 309 -3 798 154 89 134 chr15 55550303 55550461 -45830060 + MER46A DNA MER2_type 91 236 0 461 238 164 0 chr15 55550618 55550740 -45829781 + MER58A DNA MER1_type 2 143 0 1842 180 154 48 chr15 55550943 55551442 -45829079 + MLT2B3 LTR ERVL 1 552 -2 394 249 94 42 chr15 55551443 55551656 -45828865 - MER2 DNA MER2_type -1 344 121 1799 163 0 29 chr15 55551656 55551962 -45828559 + AluJb SINE Alu 1 297 -15 2301 107 0 3 chr15 55552745 55553045 -45827476 + AluSx SINE Alu 1 299 -13 484 136 262 0 chr15 55553863 55553966 -45826555 - MER2 DNA MER2_type -209 136 7 323 310 77 19 chr15 55554077 55554232 -45826289 - L1M4 LINE L1 -1950 4196 4033 21 0 0 0 chr15 55554232 55554253 -45826268 + AT_rich Low_complexity Low_complexity 1 21 0 503 257 170 14 chr15 55554536 55554754 -45825767 - MIR SINE MIR -1 261 10 1414 142 0 22 chr15 55554822 55555054 -45825467 + AluJb SINE Alu 86 312 0 2028 168 30 0 chr15 55555730 55556063 -45824458 + MER2 DNA MER2_type 2 344 0 408 244 131 48 chr15 55556835 55557064 -45823457 + L1MC4 LINE L1 7795 8042 0 602 135 0 87 chr15 55557166 55557270 -45823251 + AluJb SINE Alu 24 118 -194 446 266 101 45 chr15 55557794 55558003 -45822518 + MIR SINE MIR 45 261 -1 2208 72 0 38 chr15 55559544 55559865 -45820656 + AluY SINE Alu 1 310 0 22 35 0 0 chr15 55559870 55559899 -45820622 + AT_rich Low_complexity Low_complexity 1 29 0 186 346 84 0 chr15 55560290 55560397 -45820124 - L2 LINE L2 -12 3301 3186 1916 146 13 0 chr15 55560450 55560751 -45819770 + AluSx SINE Alu 1 305 -7 779 200 0 15 chr15 55560888 55561023 -45819498 - AluJo SINE Alu -178 134 2 23 0 0 0 chr15 55561281 55561304 -45819217 + AT_rich Low_complexity Low_complexity 1 23 0 243 140 80 20 chr15 55562602 55562652 -45817869 + Tigger5 DNA MER2_type 2265 2317 -6 407 247 22 0 chr15 55562658 55562747 -45817774 - Tigger5 DNA MER2_type -2215 108 18 230 91 45 23 chr15 55562760 55562804 -45817717 + Tigger5 DNA MER2_type 2239 2283 -40 1251 179 5 5 chr15 55563177 55563400 -45817121 + AluJb SINE Alu 86 308 -4 2355 80 0 10 chr15 55563924 55564224 -45816297 - AluSq SINE Alu -16 297 1 813 179 0 0 chr15 55565045 55565162 -45815359 + FLAM_C SINE Alu 2 118 -25 2360 88 0 0 chr15 55565217 55565511 -45815010 + AluSx SINE Alu 1 294 -18 702 243 70 84 chr15 55566033 55566317 -45814204 - MER102b DNA MER1_type -18 323 44 722 186 0 50 chr15 55566945 55567085 -45813436 + FLAM_C SINE Alu 1 133 0 27 0 0 0 chr15 55567468 55567495 -45813026 + AT_rich Low_complexity Low_complexity 1 27 0 22 70 0 0 chr15 55569739 55569782 -45810739 + GC_rich Low_complexity Low_complexity 1 43 0 192 77 0 0 chr15 55569857 55569883 -45810638 + (CCG)n Simple_repeat Simple_repeat 2 27 0 285 241 60 0 chr15 55570052 55570135 -45810386 + CT-rich Low_complexity Low_complexity 3 90 0 264 59 0 0 chr15 55570965 55570999 -45809522 + (TG)n Simple_repeat Simple_repeat 2 35 0 511 172 11 11 chr15 55571002 55571095 -45809426 - FRAM SINE Alu -10 166 74 216 0 0 0 chr15 55571112 55571136 -45809385 + (TG)n Simple_repeat Simple_repeat 2 25 0 848 157 63 19 chr15 55571139 55571298 -45809223 - FRAM SINE Alu 0 166 1 2298 85 7 3 chr15 55571391 55571686 -45808835 - AluSp SINE Alu -17 296 1 29 28 0 0 chr15 55572143 55572179 -45808342 + AT_rich Low_complexity Low_complexity 1 36 0 2009 99 35 0 chr15 55572179 55572463 -45808058 + AluSx SINE Alu 1 294 -18 364 113 0 0 chr15 55572463 55572516 -45808005 + AluSg/x SINE Alu 135 187 -113 1050 94 0 0 chr15 55572517 55572645 -45807876 + AluSg/x SINE Alu 160 290 -22 198 0 0 0 chr15 55572645 55572667 -45807854 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 906 205 0 0 chr15 55572687 55572843 -45807678 + FRAM SINE Alu 6 161 -15 483 232 17 90 chr15 55573044 55573132 -45807389 + MIR SINE MIR 40 110 -152 1867 147 6 13 chr15 55573132 55573444 -45807077 - AluJb SINE Alu -2 310 1 483 232 17 90 chr15 55573444 55573532 -45806989 + MIR SINE MIR 110 203 -59 801 171 0 23 chr15 55574030 55574159 -45806362 + FLAM_C SINE Alu 3 128 -5 234 316 80 66 chr15 55574380 55574744 -45805777 + L2 LINE L2 1806 2174 -1140 251 341 47 0 chr15 55574775 55574860 -45805661 + L2 LINE L2 3146 3234 -38 669 280 31 36 chr15 55574899 55575124 -45805397 + MIR SINE MIR 39 262 0 340 259 31 37 chr15 55575126 55575288 -45805233 + L2 LINE L2 2283 2443 -871 2354 85 3 13 chr15 55575490 55575797 -45804724 + AluSp SINE Alu 1 304 -9 2133 108 0 20 chr15 55576093 55576399 -45804122 - AluSx SINE Alu -12 300 1 333 286 41 20 chr15 55576707 55576805 -45803716 - MIR SINE MIR -155 107 8 184 347 40 0 chr15 55576823 55576898 -45803623 + L2 LINE L2 2896 2973 -299 1740 146 0 68 chr15 55577035 55577153 -45803368 + AluJo SINE Alu 1 126 -186 2000 137 3 19 chr15 55577153 55577468 -45803053 - AluSx SINE Alu -2 310 1 2077 147 0 0 chr15 55577468 55577768 -45802753 - AluSx SINE Alu -12 300 1 1740 146 0 68 chr15 55577768 55577969 -45802552 + AluJo SINE Alu 124 299 -13 1483 158 39 49 chr15 55578230 55578514 -45802007 - AluJo SINE Alu -31 281 1 403 311 50 6 chr15 55578524 55578685 -45801836 + Charlie8 DNA MER1_type 71 238 -2179 182 200 0 0 chr15 55578980 55579020 -45801501 - L2 LINE L2 0 3313 3274 316 279 96 0 chr15 55579066 55579170 -45801351 - MIR SINE MIR -33 229 116 2133 108 7 17 chr15 55579876 55580011 -45800510 + AluSq SINE Alu 1 136 -177 2069 117 7 36 chr15 55580011 55580320 -45800201 + AluSq SINE Alu 1 300 -13 2133 108 7 17 chr15 55580320 55580481 -45800040 + AluSq SINE Alu 136 294 -19 25 51 0 0 chr15 55580646 55580685 -45799836 + AT_rich Low_complexity Low_complexity 1 39 0 1423 162 5 0 chr15 55580786 55581002 -45799519 - U3 snRNA snRNA 0 217 1 243 195 58 126 chr15 55581016 55581103 -45799418 - MIR SINE MIR -122 140 60 1208 180 19 0 chr15 55581416 55581627 -45798894 + AluJo SINE Alu 85 299 -13 333 336 33 16 chr15 55581629 55581751 -45798770 + MER5A DNA MER1_type 66 189 0 284 173 0 0 chr15 55581846 55581898 -45798623 - HsTC2 DNA Tc2 -2 1896 1845 1484 164 109 4 chr15 55581983 55582271 -45798250 + AluJo SINE Alu 1 315 0 450 0 0 0 chr15 55582439 55582489 -45798032 + (CA)n Simple_repeat Simple_repeat 2 51 0 669 256 128 0 chr15 55582653 55582817 -45797704 - MER5A DNA MER1_type -1 188 4 2341 110 3 0 chr15 55583841 55584151 -45796370 + AluSp SINE Alu 1 311 -2 1832 263 105 60 chr15 55584652 55585092 -45795429 + HAL1 LINE L1 1243 1661 -846 2138 130 0 0 chr15 55585092 55585384 -45795137 + AluSg1 SINE Alu 1 292 -17 2244 120 0 0 chr15 55585384 55585693 -45794828 + AluSc SINE Alu 1 309 0 1832 263 105 60 chr15 55585693 55585705 -45794816 + HAL1 LINE L1 1661 1671 -836 1486 196 13 36 chr15 55585705 55586006 -45794515 + AluJo SINE Alu 1 294 -18 1832 263 105 60 chr15 55586006 55586560 -45793961 + HAL1 LINE L1 1671 2297 -210 894 207 13 0 chr15 55586599 55586749 -45793772 - FRAM SINE Alu -14 152 1 935 200 29 0 chr15 55586831 55587001 -45793520 + FAM SINE Alu 1 175 0 1638 185 43 0 chr15 55587162 55587443 -45793078 + AluJb SINE Alu 1 293 -19 22 0 0 0 chr15 55587443 55587465 -45793056 + AT_rich Low_complexity Low_complexity 1 22 0 2192 114 3 3 chr15 55587986 55588285 -45792236 - AluSp SINE Alu -14 299 1 4180 168 56 64 chr15 55588532 55589494 -45791027 + LTR13 LTR ERVK 1 954 0 1827 97 0 31 chr15 55589524 55589783 -45790738 + AluSg SINE Alu 56 306 -4 2494 53 3 0 chr15 55589866 55590167 -45790354 + AluY SINE Alu 1 302 -9 1428 68 0 0 chr15 55590167 55590344 -45790177 + AluSg/x SINE Alu 134 310 -2 218 317 125 10 chr15 55590403 55590507 -45790014 + L2 LINE L2 3198 3313 0 30 0 0 0 chr15 55591378 55591408 -45789113 + GC_rich Low_complexity Low_complexity 1 30 0 723 150 7 116 chr15 55593482 55593629 -45786892 + FLAM_A SINE Alu 2 132 -1 384 348 118 45 chr15 55594487 55594529 -45785992 - L2 LINE L2 -25 3247 3210 2492 71 0 3 chr15 55594529 55594839 -45785682 + AluSq SINE Alu 1 309 -4 384 348 118 45 chr15 55594839 55595109 -45785412 - L2 LINE L2 -62 3210 2912 924 139 64 0 chr15 55595378 55595550 -45784971 + Charlie1 DNA MER1_type 57 239 -2522 719 153 29 0 chr15 55595534 55595671 -45784850 + Charlie1 DNA MER1_type 2620 2760 -1 * 1822 96 12 8 chr15 55596188 55596437 -45784084 - AluSx SINE Alu -11 301 52 845 161 0 8 chr15 55597066 55597196 -45783325 + FLAM_C SINE Alu 1 129 -4 904 150 0 0 chr15 55597819 55597952 -45782569 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr15 55597953 55597974 -45782547 + AT_rich Low_complexity Low_complexity 1 21 0 472 167 0 0 chr15 55598108 55598186 -45782335 - FLAM_A SINE Alu -1 141 64 1626 166 13 45 chr15 55598951 55599130 -45781391 - AluJb SINE Alu -9 303 137 1547 127 192 8 chr15 55599130 55599390 -45781131 - AluSg1 SINE Alu -1 308 1 1626 166 13 45 chr15 55599390 55599523 -45780998 - AluJb SINE Alu -175 137 1 274 306 7 69 chr15 55600344 55600451 -45780070 - MIR SINE MIR -40 222 125 2317 80 13 3 chr15 55600451 55600752 -45779769 + AluSp SINE Alu 1 304 -9 274 306 7 69 chr15 55600752 55600788 -45779733 - MIR SINE MIR -137 125 88 325 250 60 0 chr15 55601159 55601243 -45779278 + L2 LINE L2 2565 2653 -661 1078 259 87 82 chr15 55601364 55601384 -45779137 - L1MEc LINE L1 -4233 2163 2145 1908 113 0 0 chr15 55601384 55601640 -45778881 - AluSq SINE Alu -19 294 39 1078 259 87 82 chr15 55601640 55602400 -45778121 - L1MEc LINE L1 -4251 2145 1379 1415 174 38 55 chr15 55602414 55602707 -45777814 - AluJo SINE Alu -19 293 6 23 54 0 0 chr15 55602707 55602744 -45777777 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr15 55602746 55602766 -45777755 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1899 149 7 3 chr15 55602768 55603050 -45777471 - AluJo SINE Alu -27 285 3 1089 288 44 31 chr15 55603057 55603512 -45777009 - L1MEc LINE L1 -5763 633 173 239 322 43 9 chr15 55603645 55603760 -45776761 - L1MC4 LINE L1 -161 7881 7763 1037 91 0 0 chr15 55603763 55603895 -45776626 - AluSg/x SINE Alu -9 301 170 739 181 0 0 chr15 55603896 55604012 -45776509 - AluJo/FLAM SINE Alu -186 116 1 723 150 7 116 chr15 55606575 55606722 -45773799 + FLAM_A SINE Alu 2 132 -1 402 348 118 45 chr15 55607581 55607623 -45772898 - L2 LINE L2 -25 3247 3210 2479 71 0 3 chr15 55607623 55607933 -45772588 + AluSq SINE Alu 1 309 -4 402 348 118 45 chr15 55607933 55608203 -45772318 - L2 LINE L2 -62 3210 2912 839 139 64 0 chr15 55608472 55608644 -45771877 + Charlie1 DNA MER1_type 57 239 -2522 654 148 30 0 chr15 55608630 55608765 -45771756 + Charlie1 DNA MER1_type 2622 2760 -1 * 1826 96 12 8 chr15 55609282 55609531 -45770990 - AluSx SINE Alu -11 301 52 783 163 0 8 chr15 55610162 55610291 -45770230 + FLAM_C SINE Alu 1 128 -5 866 143 0 0 chr15 55610914 55611047 -45769474 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr15 55611048 55611069 -45769452 + AT_rich Low_complexity Low_complexity 1 21 0 435 167 0 0 chr15 55611203 55611281 -45769240 - FLAM_A SINE Alu -1 141 64 1677 166 13 45 chr15 55612046 55612225 -45768296 - AluJb SINE Alu -9 303 137 1545 127 193 8 chr15 55612225 55612484 -45768037 - AluSg1 SINE Alu -2 307 1 1677 166 13 45 chr15 55612484 55612617 -45767904 - AluJb SINE Alu -175 137 1 310 361 10 52 chr15 55613438 55613545 -45766976 - MIR SINE MIR -40 222 125 2327 76 13 3 chr15 55613545 55613846 -45766675 + AluSp SINE Alu 1 304 -9 310 361 10 52 chr15 55613846 55613932 -45766589 - MIR SINE MIR -137 125 37 309 324 29 0 chr15 55614254 55614356 -45766165 + L2 LINE L2 2568 2672 -642 2176 115 0 7 chr15 55614476 55614772 -45765749 - AluSq SINE Alu -19 294 1 2371 92 0 0 chr15 55615043 55615347 -45765174 + AluSg1 SINE Alu 1 304 -5 260 247 153 0 chr15 55616185 55616270 -45764251 + MIR SINE MIR 88 185 -77 2270 115 0 3 chr15 55616335 55616648 -45763873 - AluSx SINE Alu 0 312 1 1283 163 40 83 chr15 55617081 55617358 -45763163 + AluJb SINE Alu 3 267 -45 1825 153 7 10 chr15 55617471 55617759 -45762762 + AluJb SINE Alu 1 287 -25 1819 172 0 46 chr15 55618036 55618362 -45762159 - AluJo SINE Alu -1 311 1 231 36 0 0 chr15 55618563 55618591 -45761930 + (A)n Simple_repeat Simple_repeat 1 28 0 887 201 5 34 chr15 55618808 55619012 -45761509 - MER58A DNA MER1_type 0 224 27 463 75 11 85 chr15 55619037 55619114 -45761407 + L1MC2 LINE L1 6258 6328 -16 1872 131 32 7 chr15 55619114 55619397 -45761124 - AluSx SINE Alu -22 290 1 463 75 11 85 chr15 55619397 55619413 -45761108 + L1MC2 LINE L1 6328 6344 0 346 253 44 98 chr15 55620015 55620240 -45760281 - L1ME3A LINE L1 -1 6169 5957 2080 138 0 0 chr15 55620261 55620557 -45759964 - AluSq SINE Alu -17 296 1 222 91 0 0 chr15 55620559 55620592 -45759929 + (T)n Simple_repeat Simple_repeat 1 33 0 816 117 0 0 chr15 55620610 55620721 -45759800 - AluSq/x SINE Alu -202 111 1 318 40 40 0 chr15 55620802 55620852 -45759669 + MADE1 DNA Mariner 29 80 0 2281 90 3 3 chr15 55620884 55621183 -45759338 + AluY SINE Alu 1 299 -12 364 257 0 0 chr15 55621757 55621831 -45758690 + MER5C DNA MER1_type 1 74 -250 25 0 0 50 chr15 55622138 55622156 -45758365 + AT_rich Low_complexity Low_complexity 1 18 -20 2129 136 0 7 chr15 55622156 55622451 -45758070 + AluSx SINE Alu 1 293 -19 25 0 0 50 chr15 55622451 55622472 -45758049 + AT_rich Low_complexity Low_complexity 18 38 0 2323 75 0 3 chr15 55622484 55622779 -45757742 + AluY SINE Alu 1 294 -17 2014 129 3 39 chr15 55622885 55623061 -45757460 - AluJb SINE Alu -12 300 138 2377 90 3 6 chr15 55623061 55623373 -45757148 - AluSp SINE Alu 0 313 3 2014 129 3 39 chr15 55623373 55623506 -45757015 - AluJb SINE Alu -174 138 2 208 135 0 0 chr15 55623656 55623693 -45756828 + (TTTTTA)n Simple_repeat Simple_repeat 3 39 0 1649 265 120 19 chr15 55623760 55624326 -45756195 - L2 LINE L2 -385 2929 2421 2292 85 0 3 chr15 55624326 55624621 -45755900 + AluY SINE Alu 1 294 -17 1649 265 120 19 chr15 55624621 55624644 -45755877 - L2 LINE L2 -893 2421 2402 207 0 0 0 chr15 55624644 55624667 -45755854 + (TA)n Simple_repeat Simple_repeat 1 23 0 1649 265 120 19 chr15 55624667 55624691 -45755830 - L2 LINE L2 -912 2402 2253 525 222 9 0 chr15 55624693 55624801 -45755720 + MER3 DNA MER1_type 1 109 -100 1356 160 0 9 chr15 55624806 55625031 -45755490 + AluJb SINE Alu 64 286 -26 528 16 0 0 chr15 55625033 55625094 -45755427 + (TG)n Simple_repeat Simple_repeat 2 62 0 438 161 65 0 chr15 55625094 55625187 -45755334 + MER3 DNA MER1_type 110 208 -1 273 216 0 0 chr15 55625143 55625194 -45755327 - MER3 DNA MER1_type -117 92 42 * 1069 260 143 0 chr15 55625195 55625553 -45754968 - L2 LINE L2 -1063 2251 1843 1840 161 46 23 chr15 55625558 55625744 -45754777 + L1MB8 LINE L1 5512 5692 -492 2232 117 0 0 chr15 55625744 55626043 -45754478 + AluSg SINE Alu 1 299 -11 1840 161 46 23 chr15 55626043 55626248 -45754273 + L1MB8 LINE L1 5692 5912 -272 1071 174 25 25 chr15 55626248 55626444 -45754077 + AluJo SINE Alu 106 301 -11 754 124 0 48 chr15 55626444 55626589 -45753932 + L1MB8 LINE L1 5934 6071 -107 1847 127 14 14 chr15 55626593 55626907 -45753614 + AluSx SINE Alu 6 312 0 249 282 183 34 chr15 55627130 55627453 -45753068 - L2 LINE L2 -1234 2080 1710 2090 125 7 0 chr15 55627783 55628079 -45752442 - AluSx SINE Alu -14 298 1 1203 131 88 78 chr15 55628274 55628482 -45752039 + MER33 DNA MER1_type 1 215 -2370 1804 190 0 3 chr15 55628482 55628782 -45751739 + AluJb SINE Alu 2 300 -12 1203 131 88 78 chr15 55628782 55628893 -45751628 + MER33 DNA MER1_type 215 323 -1 209 245 0 3 chr15 55629180 55629231 -45751290 - MIR SINE MIR -57 151 102 2023 142 0 32 chr15 55629363 55629679 -45750842 - AluSg SINE Alu -2 308 3 2245 118 0 0 chr15 55629715 55630011 -45750510 - AluSq SINE Alu -16 297 2 2484 42 0 39 chr15 55630542 55630850 -45749671 + AluY SINE Alu 1 296 -15 21 57 0 0 chr15 55631264 55631299 -45749222 + AT_rich Low_complexity Low_complexity 1 35 0 1194 143 0 6 chr15 55631939 55632107 -45748414 + AluJb SINE Alu 133 299 -13 2215 125 0 0 chr15 55632230 55632527 -45747994 - AluSx SINE Alu -15 297 1 313 156 0 0 chr15 55632554 55632610 -45747911 + Alu SINE Alu 1 49 -253 267 67 0 0 chr15 55632609 55632654 -45747867 + FAM SINE Alu 135 179 0 * 2024 75 86 0 chr15 55632903 55633171 -45747350 - AluSq SINE Alu -22 291 1 342 255 102 0 chr15 55633366 55633523 -45746998 + L1ME4a LINE L1 5949 6121 0 571 188 87 29 chr15 55633702 55633840 -45746681 - MER58C DNA MER1_type -8 207 62 2186 120 0 10 chr15 55634438 55634746 -45745775 + AluSc SINE Alu 1 305 -4 1907 164 3 0 chr15 55634788 55635075 -45745446 + AluSx SINE Alu 1 288 -24 1996 63 0 73 chr15 55635080 55635367 -45745154 + AluY SINE Alu 1 266 -45 2044 140 10 3 chr15 55635781 55636089 -45744432 + AluJb SINE Alu 3 312 0 621 247 0 27 chr15 55636100 55636246 -45744275 + FLAM_A SINE Alu 1 142 0 31 44 0 0 chr15 55636760 55636805 -45743716 + AT_rich Low_complexity Low_complexity 1 45 0 1273 113 16 0 chr15 55637048 55637234 -45743287 + AluY SINE Alu 1 189 -122 475 428 0 0 chr15 55637335 55637515 -45743006 + C-rich Low_complexity Low_complexity 1 180 0 1017 199 80 12 chr15 55637564 55637815 -45742706 - AluSx SINE Alu -39 273 6 886 195 0 0 chr15 55637818 55637977 -45742544 - FRAM SINE Alu -9 167 9 206 359 0 0 chr15 55638654 55638718 -45741803 + L2 LINE L2 3201 3264 -8 2431 48 0 29 chr15 55638817 55639129 -45741392 - AluY SINE Alu -8 303 1 396 309 137 32 chr15 55639196 55639454 -45741067 + L2 LINE L2 2782 3064 -249 240 167 0 0 chr15 55639486 55639534 -45740987 + CT-rich Low_complexity Low_complexity 4 51 0 2390 153 38 25 chr15 55639544 55640021 -45740500 - L1MC1 LINE L1 -37 6296 5814 2459 84 0 0 chr15 55640062 55640370 -45740151 - AluY SINE Alu -3 308 1 1799 162 54 8 chr15 55640372 55640397 -45740124 - L1MB2 LINE L1 -117 6054 6032 1761 176 7 7 chr15 55640397 55640675 -45739846 + AluJo SINE Alu 2 279 -33 1799 162 54 8 chr15 55640675 55641038 -45739483 - L1MB2 LINE L1 -139 6032 5648 477 219 46 46 chr15 55641179 55641238 -45739283 + L2 LINE L2 3159 3217 -96 1781 139 12 0 chr15 55641238 55641496 -45739025 - AluSx SINE Alu -5 307 47 477 219 46 46 chr15 55641496 55641587 -45738934 + L2 LINE L2 3216 3309 -4 1290 272 81 49 chr15 55642126 55642655 -45737866 - MER77 LTR ERV1 -6 599 54 1448 267 81 8 chr15 55642827 55643295 -45737226 - LTR33 LTR ERVL -8 513 12 3941 181 67 47 chr15 55643550 55643623 -45736898 - L1MD1 LINE L1 0 6242 6172 2184 126 0 3 chr15 55643623 55643932 -45736589 + AluSg SINE Alu 3 310 0 3941 181 67 47 chr15 55643932 55644044 -45736477 - L1MD1 LINE L1 -70 6172 6064 1852 171 7 0 chr15 55644044 55644356 -45736165 + AluJb SINE Alu 1 314 0 3941 181 67 47 chr15 55644356 55644680 -45735841 - L1MD1 LINE L1 -178 6064 5748 2044 133 0 3 chr15 55644680 55644965 -45735556 + AluSx SINE Alu 2 285 -27 3941 181 67 47 chr15 55644965 55645049 -45735472 - L1MD1 LINE L1 -494 5748 5667 780 162 0 0 chr15 55645049 55645200 -45735321 - FLAM_A SINE Alu 0 154 4 3941 181 67 47 chr15 55645200 55645394 -45735127 - L1MD1 LINE L1 -575 5667 5478 2133 122 3 13 chr15 55645394 55645705 -45734816 - AluSq SINE Alu -5 308 1 3941 181 67 47 chr15 55645705 55645843 -45734678 - L1MD1 LINE L1 -764 5478 5344 1823 167 30 0 chr15 55645843 55646143 -45734378 - AluJo SINE Alu -3 309 1 3941 181 67 47 chr15 55646143 55646270 -45734251 - L1MD1 LINE L1 -898 5344 5221 698 154 0 84 chr15 55646270 55646413 -45734108 - FLAM_C SINE Alu 0 133 3 3941 181 67 47 chr15 55646413 55646699 -45733822 - L1MD1 LINE L1 -1021 5221 4872 2002 140 10 0 chr15 55646813 55647120 -45733401 - AluJb SINE Alu -2 310 1 2327 95 10 0 chr15 55647146 55647450 -45733071 - AluSc SINE Alu -2 307 1 282 240 306 8 chr15 55647457 55647578 -45732943 + L2 LINE L2 3154 3310 -3 982 192 29 0 chr15 55647871 55648043 -45732478 - FRAM SINE Alu 0 176 1 248 259 59 37 chr15 55648146 55648281 -45732240 + L1ME LINE L1 4882 5019 -1127 915 186 13 0 chr15 55648281 55648437 -45732084 + FAM SINE Alu 1 158 -17 1186 250 78 43 chr15 55648568 55648920 -45731601 + L1ME LINE L1 5123 5461 -701 2386 74 13 0 chr15 55648920 55649219 -45731302 + AluSx SINE Alu 5 307 -5 1186 250 78 43 chr15 55649219 55649541 -45730980 + L1ME LINE L1 5461 5823 -339 349 284 77 39 chr15 55649542 55649697 -45730824 + L2 LINE L2 3121 3281 -32 1667 198 11 0 chr15 55649750 55650028 -45730493 - AluJo SINE Alu -31 281 1 1933 121 48 7 chr15 55650124 55650413 -45730108 - AluSq SINE Alu -12 301 1 1001 183 12 0 chr15 55650454 55650618 -45729903 - AluJo SINE Alu -15 297 132 1728 182 4 0 chr15 55650639 55650914 -45729607 + AluJb SINE Alu 1 276 -36 257 105 0 0 chr15 55650914 55650952 -45729569 + Alu SINE Alu 231 268 -32 681 211 0 8 chr15 55650986 55651119 -45729402 - AluJo SINE Alu -169 133 2 2023 135 3 0 chr15 55651456 55651765 -45728756 + AluSx SINE Alu 1 310 0 1345 89 0 0 chr15 55651765 55651933 -45728588 + AluSg/x SINE Alu 130 297 -13 251 167 0 0 chr15 55652101 55652143 -45728378 - MER5B DNA MER1_type -2 176 135 231 219 14 14 chr15 55652283 55652356 -45728165 + Charlie7 DNA MER1_type 37 109 -2503 41 0 0 0 chr15 55652404 55652445 -45728076 + AT_rich Low_complexity Low_complexity 1 41 0 21 71 0 0 chr15 55653071 55653113 -45727408 + AT_rich Low_complexity Low_complexity 1 42 0 2115 127 7 13 chr15 55653440 55653747 -45726774 + AluSx SINE Alu 1 305 -7 1468 90 76 9 chr15 55654601 55654812 -45725709 - AluSp SINE Alu -4 309 85 1630 150 51 15 chr15 55654864 55655166 -45725355 + AluJo SINE Alu 1 312 0 2312 104 7 0 chr15 55656144 55656442 -45724079 - AluSx SINE Alu -12 300 1 288 65 22 0 chr15 55657043 55657089 -45723432 + (TTTG)n Simple_repeat Simple_repeat 2 180 0 1866 134 3 30 chr15 55657089 55657380 -45723141 - AluSx SINE Alu -27 285 1 244 137 59 39 chr15 55657448 55657499 -45723022 - L2 LINE L2 0 3313 3262 27 0 0 0 chr15 55657515 55657542 -45722979 + AT_rich Low_complexity Low_complexity 1 27 0 935 263 65 54 chr15 55657570 55657700 -45722821 - L1MC4 LINE L1 -1 8041 7914 2337 106 3 0 chr15 55657700 55658003 -45722518 - AluSp SINE Alu -9 304 1 935 263 65 54 chr15 55658003 55658320 -45722201 - L1MC4 LINE L1 -128 7914 7589 438 169 0 0 chr15 55658321 55658410 -45722111 + CT-rich Low_complexity Low_complexity 4 92 0 2452 214 82 40 chr15 55658413 55658959 -45721562 - L1MC4 LINE L1 -442 7600 7014 1998 82 45 4 chr15 55658959 55659226 -45721295 - AluY SINE Alu -33 278 1 2452 214 82 40 chr15 55659226 55659412 -45721109 - L1MC4 LINE L1 -1028 7014 6837 1202 68 0 7 chr15 55659425 55659572 -45720949 + AluSq/x SINE Alu 1 146 -167 484 137 0 0 chr15 55659572 55659645 -45720876 + AluSc SINE Alu 221 293 -16 207 323 0 0 chr15 55659911 55659976 -45720545 + A-rich Low_complexity Low_complexity 1 65 0 219 229 73 42 chr15 55660164 55660209 -45720312 + L2 LINE L2 2142 2184 -1130 2099 55 48 4 chr15 55660209 55660506 -45720015 - AluY SINE Alu 0 309 1 219 229 73 42 chr15 55660506 55660555 -45719966 + L2 LINE L2 2184 2240 -1074 2509 260 157 36 chr15 55660559 55661015 -45719506 + L2 LINE L2 247 646 -2668 342 0 0 0 chr15 55661015 55661053 -45719468 + (CA)n Simple_repeat Simple_repeat 2 39 0 2509 260 157 36 chr15 55661053 55661767 -45718754 + L2 LINE L2 646 1559 -1755 1274 137 11 99 chr15 55661811 55661923 -45718598 - L1MB8 LINE L1 -6 6172 6094 1844 127 14 14 chr15 55661923 55662237 -45718284 - AluSx SINE Alu 0 312 6 1274 137 11 99 chr15 55662237 55662386 -45718135 - L1MB8 LINE L1 -84 6094 5934 1052 174 25 25 chr15 55662386 55662582 -45717939 - AluJo SINE Alu -11 301 106 2026 161 46 23 chr15 55662582 55662787 -45717734 - L1MB8 LINE L1 -272 5912 5713 2231 117 0 0 chr15 55662787 55663086 -45717435 - AluSg SINE Alu -11 299 1 2026 161 46 23 chr15 55663086 55663272 -45717249 - L1MB8 LINE L1 -471 5713 5512 1072 257 143 0 chr15 55663277 55663635 -45716886 + L2 LINE L2 1843 2251 -1063 482 151 65 0 chr15 55663643 55663736 -45716785 - MER3 DNA MER1_type -1 208 110 456 19 0 0 chr15 55663736 55663789 -45716732 + (CA)n Simple_repeat Simple_repeat 2 54 0 1369 138 9 18 chr15 55663791 55664016 -45716505 - AluJb SINE Alu -26 286 64 572 222 9 0 chr15 55664021 55664129 -45716392 - MER3 DNA MER1_type -100 109 1 1601 273 119 18 chr15 55664131 55664155 -45716366 + L2 LINE L2 2253 2273 -1041 369 0 0 0 chr15 55664155 55664196 -45716325 + (TA)n Simple_repeat Simple_repeat 1 41 0 1601 273 119 18 chr15 55664196 55664219 -45716302 + L2 LINE L2 2273 2292 -1022 2302 85 0 3 chr15 55664219 55664514 -45716007 - AluY SINE Alu -17 294 1 1601 273 119 18 chr15 55664514 55665080 -45715441 + L2 LINE L2 2292 2929 -385 208 135 0 0 chr15 55665147 55665184 -45715337 + (TAAAAA)n Simple_repeat Simple_repeat 3 39 0 1209 62 0 7 chr15 55665334 55665480 -45715041 + AluSq/x SINE Alu 2 146 -167 557 96 0 0 chr15 55665480 55665553 -45714968 + AluSc SINE Alu 221 293 -16 2077 78 74 3 chr15 55665954 55666237 -45714284 - AluY SINE Alu -8 303 1 23 0 0 0 chr15 55666570 55666593 -45713928 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr15 55666736 55666758 -45713763 + AT_rich Low_complexity Low_complexity 1 22 0 361 274 29 0 chr15 55666771 55666873 -45713648 + MIR SINE MIR 48 152 -56 3593 189 20 14 chr15 55667508 55667746 -45712775 + MER82 DNA MER2_type 1 236 -417 1421 151 49 0 chr15 55667746 55667971 -45712550 + MER46A DNA MER2_type 1 236 0 3593 189 20 14 chr15 55667971 55668381 -45712140 + MER82 DNA MER2_type 236 653 0 243 0 0 0 chr15 55668398 55668425 -45712096 + (TG)n Simple_repeat Simple_repeat 2 28 0 24 32 0 0 chr15 55668425 55668456 -45712065 + AT_rich Low_complexity Low_complexity 1 31 0 2348 87 3 7 chr15 55669608 55669908 -45710613 - AluSp SINE Alu -12 301 3 2285 94 13 0 chr15 55669910 55670208 -45710313 - AluSp SINE Alu -11 302 1 23 0 0 0 chr15 55670268 55670291 -45710230 + AT_rich Low_complexity Low_complexity 1 23 0 6664 107 25 11 chr15 55670724 55671680 -45708841 - LTR5 LTR ERVK 0 969 1 688 300 0 17 chr15 55671809 55671989 -45708532 + MER5B DNA MER1_type 1 177 -1 439 304 38 116 chr15 55672436 55672754 -45707767 - L2 LINE L2 0 3313 3055 2251 102 0 0 chr15 55672754 55673038 -45707483 + AluSq SINE Alu 1 284 -29 439 304 38 116 chr15 55673038 55673271 -45707250 - L2 LINE L2 -258 3055 2805 2244 75 7 4 chr15 55673283 55673593 -45706928 - AluY SINE Alu 0 311 1 430 107 0 80 chr15 55673618 55673693 -45706828 - AluJ/FRAM SINE Alu -12 300 232 323 174 112 47 chr15 55673700 55673810 -45706711 - L1MC4 LINE L1 -298 7744 7528 1575 205 10 13 chr15 55673994 55674301 -45706220 - AluJo SINE Alu -4 308 3 21 0 0 0 chr15 55674651 55674672 -45705849 + AT_rich Low_complexity Low_complexity 1 21 0 1247 188 4 32 chr15 55674674 55674924 -45705597 + AluJo SINE Alu 1 243 -69 1681 196 0 10 chr15 55675080 55675381 -45705140 + AluJo SINE Alu 14 311 -1 2328 103 0 0 chr15 55675504 55675796 -45704725 + AluSx SINE Alu 6 297 -15 2011 141 20 0 chr15 55675966 55676264 -45704257 - AluSx SINE Alu -8 304 1 38 0 0 0 chr15 55676469 55676507 -45704014 + AT_rich Low_complexity Low_complexity 1 38 0 2025 139 0 0 chr15 55676700 55677015 -45703506 - AluSx SINE Alu 0 315 1 2181 126 3 3 chr15 55677206 55677516 -45703005 - AluSx SINE Alu -2 310 1 2222 75 0 41 chr15 55678012 55678351 -45702170 - AluY SINE Alu 0 327 1 2184 121 6 10 chr15 55678353 55678666 -45701855 - AluSx SINE Alu 0 312 1 288 217 0 0 chr15 55678704 55678750 -45701771 + AluJ/monomer SINE Alu 1 46 -256 2257 119 3 0 chr15 55678776 55679088 -45701433 - AluSq SINE Alu 0 313 1 470 286 36 7 chr15 55680116 55680256 -45700265 - MIR SINE MIR -40 222 79 2117 134 0 3 chr15 55680543 55680835 -45699686 - AluSx SINE Alu -21 291 1 1789 78 9 0 chr15 55681009 55681240 -45699281 + AluY SINE Alu 72 304 -7 26 0 0 0 chr15 55681293 55681319 -45699202 + AT_rich Low_complexity Low_complexity 1 26 0 2504 41 0 41 chr15 55681650 55681967 -45698554 + AluY SINE Alu 1 304 -7 2219 101 10 19 chr15 55682020 55682328 -45698193 + AluSx SINE Alu 1 305 -7 6460 130 12 23 chr15 55682328 55682508 -45698013 + L1MA2 LINE L1 5195 5376 -928 2165 139 0 0 chr15 55682508 55682810 -45697711 + AluSx SINE Alu 1 302 -10 6460 130 12 23 chr15 55682810 55683696 -45696825 + L1MA2 LINE L1 5376 6252 -52 2329 76 10 20 chr15 55683696 55684000 -45696521 + AluY SINE Alu 1 301 -10 6460 130 12 23 chr15 55684000 55684053 -45696468 + L1MA2 LINE L1 6252 6304 0 549 300 144 19 chr15 55685033 55685303 -45695218 - L2 LINE L2 -490 2824 2521 288 303 131 33 chr15 55685648 55685770 -45694751 - L2 LINE L2 -5 3267 3134 2407 67 0 10 chr15 55685848 55686146 -45694375 + AluY SINE Alu 3 297 -14 2127 127 3 0 chr15 55686311 55686603 -45693918 + AluSx SINE Alu 1 293 -19 2156 97 0 17 chr15 55686603 55686901 -45693620 + AluSc SINE Alu 1 293 -16 2042 128 17 0 chr15 55687129 55687419 -45693102 - AluJb SINE Alu -17 295 1 262 241 166 60 chr15 55687615 55687934 -45692587 + L1ME4a LINE L1 5757 6109 -12 1522 202 14 11 chr15 55687987 55688269 -45692252 - AluJb SINE Alu -29 283 1 2147 134 0 0 chr15 55688357 55688656 -45691865 - AluSx SINE Alu -13 299 1 1397 144 0 30 chr15 55688763 55689041 -45691480 - AluJo SINE Alu 0 354 84 1972 135 7 14 chr15 55689389 55689686 -45690835 + AluSx SINE Alu 6 300 -12 438 305 112 30 chr15 55689924 55690157 -45690364 + MIR SINE MIR 2 253 -9 340 135 0 0 chr15 55690303 55690381 -45690140 - Alu SINE Alu 0 326 249 2143 110 4 4 chr15 55690485 55690766 -45689755 - AluSx SINE Alu -31 281 1 2217 100 13 7 chr15 55691057 55691356 -45689165 + AluSg SINE Alu 6 306 -4 1980 112 0 4 chr15 55691511 55691780 -45688741 + AluSg SINE Alu 36 303 -7 2286 82 7 3 chr15 55693152 55693445 -45687076 + AluSx SINE Alu 1 294 -18 2266 94 0 0 chr15 55694784 55695072 -45685449 + AluSx SINE Alu 17 304 -8 23 0 0 0 chr15 55695417 55695440 -45685081 + AT_rich Low_complexity Low_complexity 1 23 0 2338 88 0 19 chr15 55697808 55698116 -45682405 + AluSx SINE Alu 1 302 -10 21 57 0 0 chr15 55699091 55699126 -45681395 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr15 55699365 55699394 -45681127 + AT_rich Low_complexity Low_complexity 1 29 0 1074 158 0 6 chr15 55699602 55699766 -45680755 + AluJb SINE Alu 129 291 -21 2430 198 38 9 chr15 55699771 55700296 -45680225 + L1MB8 LINE L1 5496 6035 -143 226 73 0 73 chr15 55700296 55700337 -45680184 + Alu SINE Alu 1 38 -263 * 285 151 0 0 chr15 55700332 55700385 -45680136 + AluSp/q SINE Alu 246 298 -5 668 160 42 42 chr15 55700385 55700529 -45679992 + L1MB8 LINE L1 6023 6166 -12 330 26 0 0 chr15 55700539 55700578 -45679943 + (TG)n Simple_repeat Simple_repeat 2 40 0 1917 112 3 44 chr15 55700578 55700873 -45679648 - AluSx SINE Alu -21 291 9 1519 166 101 0 chr15 55700899 55701176 -45679345 - AluJo SINE Alu -7 305 1 1995 250 35 48 chr15 55701207 55701399 -45679122 + L1ME2 LINE L1 3744 3937 -2209 1784 110 47 63 chr15 55701399 55701699 -45678822 - AluSg SINE Alu -15 295 1 1995 250 35 48 chr15 55701699 55702134 -45678387 + L1ME2 LINE L1 3937 4363 -1783 237 224 0 0 chr15 55702254 55702303 -45678218 - MIR SINE MIR -159 103 55 456 244 195 24 chr15 55703008 55703457 -45677064 - MER77 LTR ERV1 -8 597 37 2555 60 0 9 chr15 55703474 55703790 -45676731 - AluSq SINE Alu 0 313 1 245 253 60 80 chr15 55703814 55703964 -45676557 + MER58A DNA MER1_type 1 147 0 484 258 15 0 chr15 55704035 55704099 -45676422 - Charlie5 DNA MER1_type -19 2566 2504 2592 35 0 16 chr15 55704099 55704415 -45676106 + AluY SINE Alu 1 311 0 484 258 15 0 chr15 55704415 55704482 -45676039 - Charlie5 DNA MER1_type -81 2504 2433 233 209 134 75 chr15 55704517 55704704 -45675817 - L2 LINE L2 -296 3017 2820 1415 246 59 30 chr15 55705059 55705530 -45674991 - MLT1D LTR MaLR -20 485 1 348 240 16 50 chr15 55705851 55705972 -45674549 + L1ME2 LINE L1 4432 4548 -1598 1694 125 0 97 chr15 55705972 55706321 -45674200 - AluSx SINE Alu 0 319 1 338 216 26 52 chr15 55706322 55706373 -45674148 + L1ME2 LINE L1 4888 4939 -1207 2672 118 64 10 chr15 55706373 55706779 -45673742 + MSTA LTR MaLR 1 428 0 338 216 26 52 chr15 55706779 55706843 -45673678 + L1ME2 LINE L1 4939 5000 -1146 1755 111 0 0 chr15 55706843 55707087 -45673434 - AluSg/x SINE Alu 0 312 69 2375 87 3 0 chr15 55707713 55708011 -45672510 + AluSp SINE Alu 1 299 -14 501 284 61 52 chr15 55708238 55708307 -45672214 + L1PB1 LINE L1 5285 5352 -799 2172 83 0 28 chr15 55708307 55708596 -45671925 + AluSg SINE Alu 1 281 -29 358 24 0 0 chr15 55708596 55708638 -45671883 + (TAA)n Simple_repeat Simple_repeat 2 180 0 501 284 61 52 chr15 55708638 55709454 -45671067 + L1PB1 LINE L1 5352 5880 -271 2801 198 68 31 chr15 55708638 55708723 -45671798 + L1ME2 LINE L1 5348 5428 -736 2080 114 24 3 chr15 55708723 55709020 -45671501 + AluSq SINE Alu 1 303 -10 2801 198 68 31 chr15 55709020 55709712 -45670809 + L1ME2 LINE L1 5428 6154 -10 293 176 118 10 chr15 55709710 55709812 -45670709 + L1M4 LINE L1 4317 4429 -1717 * 410 93 47 35 chr15 55709826 55709912 -45670609 + MER97b DNA MER1_type? 533 619 -434 2287 112 0 3 chr15 55709912 55710208 -45670313 + AluSc SINE Alu 1 295 -14 269 233 0 0 chr15 55710234 55710307 -45670214 + MER97c DNA MER1_type? 606 678 -412 2257 102 0 0 chr15 55710330 55710623 -45669898 - AluSg1 SINE Alu -16 293 1 784 143 48 0 chr15 55710757 55710883 -45669638 - AluJb SINE Alu -179 133 2 217 236 164 73 chr15 55711102 55711212 -45669309 + MER5B DNA MER1_type 2 121 -57 2209 94 7 0 chr15 55711264 55711552 -45668969 - AluSg SINE Alu -20 290 1 2347 103 0 0 chr15 55711562 55711872 -45668649 - AluSx SINE Alu -2 310 1 211 279 170 20 chr15 55711981 55712128 -45668393 - MIR SINE MIR -44 218 50 1938 164 7 7 chr15 55712576 55712881 -45667640 + AluSx SINE Alu 1 305 -7 954 244 166 24 chr15 55713326 55713512 -45667009 - L2 LINE L2 -2 3311 3153 2073 102 20 10 chr15 55713512 55713806 -45666715 - AluSq SINE Alu -16 297 1 954 244 166 24 chr15 55713806 55714042 -45666479 - L2 LINE L2 -160 3153 2829 1804 104 0 4 chr15 55714938 55715179 -45665342 + AluSg SINE Alu 56 295 -15 2265 98 7 3 chr15 55715189 55715495 -45665026 + AluSg SINE Alu 1 307 -3 358 276 22 37 chr15 55715755 55715889 -45664632 + MIR SINE MIR 121 252 -10 642 308 36 5 chr15 55717690 55717885 -45662636 - MIR SINE MIR -34 228 28 644 146 18 195 chr15 55717928 55718094 -45662427 + MER5A DNA MER1_type 1 118 -71 1615 169 0 30 chr15 55718094 55718389 -45662132 - AluJb SINE Alu -26 286 1 644 146 18 195 chr15 55718389 55718448 -45662073 + MER5A DNA MER1_type 118 186 -3 970 130 0 59 chr15 55718561 55718730 -45661791 + AluSg/x SINE Alu 135 293 -17 1762 149 17 14 chr15 55718765 55719061 -45661460 + AluSx SINE Alu 1 297 -15 740 171 0 0 chr15 55719301 55719418 -45661103 - AluJb SINE Alu -195 117 1 2165 118 7 0 chr15 55719711 55720017 -45660504 + AluSx SINE Alu 3 310 -2 905 80 0 0 chr15 55720490 55720602 -45659919 + AluSq/x SINE Alu 1 112 -200 3261 191 20 14 chr15 55721777 55722015 -45658506 + MER82 DNA MER2_type 1 236 -417 1291 156 49 0 chr15 55722015 55722240 -45658281 + MER46A DNA MER2_type 1 236 0 3261 191 20 14 chr15 55722240 55722650 -45657871 + MER82 DNA MER2_type 236 653 0 279 0 0 0 chr15 55722667 55722698 -45657823 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 297 0 0 0 chr15 55722697 55722730 -45657791 + (TA)n Simple_repeat Simple_repeat 1 33 0 1442 154 101 11 chr15 55723795 55724062 -45656459 + AluSg SINE Alu 1 291 -19 199 333 118 25 chr15 55724317 55724521 -45656000 - L2 LINE L2 -1231 2083 1861 2272 119 0 0 chr15 55724901 55725211 -45655310 + AluSx SINE Alu 1 310 -2 2079 127 0 10 chr15 55725580 55725880 -45654641 + AluSq SINE Alu 1 297 -16 2251 99 0 0 chr15 55726099 55726383 -45654138 - AluSc SINE Alu -25 284 1 1519 189 10 17 chr15 55726405 55726701 -45653820 - AluJo SINE Alu -18 294 1 1817 145 34 0 chr15 55727283 55727586 -45652935 + AluSg SINE Alu 5 316 0 432 0 0 0 chr15 55727985 55728033 -45652488 + (TG)n Simple_repeat Simple_repeat 2 49 0 2064 113 0 39 chr15 55728034 55728345 -45652176 - AluSx SINE Alu -13 299 1 29 0 0 0 chr15 55728589 55728618 -45651903 + AT_rich Low_complexity Low_complexity 1 29 0 1840 168 3 16 chr15 55729637 55729952 -45650569 + AluSx SINE Alu 1 311 -1 182 240 80 20 chr15 55731757 55731807 -45648714 - MIR SINE MIR -132 76 24 1789 207 83 62 chr15 55732911 55733679 -45646842 + MER20B DNA MER1_type 1 784 0 606 230 59 20 chr15 55734313 55734465 -45646056 + MIR SINE MIR 20 177 -85 23 0 0 0 chr15 55735836 55735859 -45644662 + AT_rich Low_complexity Low_complexity 1 23 0 2119 137 0 0 chr15 55736481 55736780 -45643741 - AluSx SINE Alu -13 299 1 1878 163 0 7 chr15 55738057 55738352 -45642169 + AluSx SINE Alu 6 298 -14 180 0 0 0 chr15 55740459 55740479 -45640042 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 192 111 0 0 chr15 55740785 55740821 -45639700 + (A)n Simple_repeat Simple_repeat 1 36 0 25 0 0 0 chr15 55742559 55742584 -45637937 + AT_rich Low_complexity Low_complexity 1 25 0 364 113 42 14 chr15 55743410 55743481 -45637040 + AluJ/FRAM SINE Alu 224 296 -6 688 173 16 16 chr15 55743820 55743947 -45636574 - FLAM_A SINE Alu -6 127 1 1718 142 3 36 chr15 55743966 55744268 -45636253 - AluJo SINE Alu -16 296 5 1111 128 12 103 chr15 55744526 55744631 -45635890 - AluSx SINE Alu -92 220 148 1606 182 7 0 chr15 55744631 55744922 -45635599 - AluSc SINE Alu -16 293 1 1111 128 12 103 chr15 55744922 55745058 -45635463 - AluSx SINE Alu -164 148 1 599 147 165 0 chr15 55745156 55745265 -45635256 - MER5A DNA MER1_type 0 189 63 1250 34 0 0 chr15 55745268 55745416 -45635105 + L1PA4 LINE L1 6000 6147 -8 326 233 27 0 chr15 55745449 55745522 -45634999 - MER5A DNA MER1_type -114 75 1 1873 131 0 28 chr15 55745745 55746035 -45634486 - AluJb SINE Alu -30 282 1 1848 117 55 21 chr15 55746269 55746423 -45634098 - AluSx SINE Alu -12 300 153 2183 119 0 0 chr15 55746423 55746733 -45633788 - AluSg SINE Alu 0 310 1 1848 117 55 21 chr15 55746733 55746868 -45633653 - AluSx SINE Alu -159 153 1 814 153 0 0 chr15 55747145 55747263 -45633258 + FLAM_C SINE Alu 1 118 -25 39 0 0 0 chr15 55747269 55747308 -45633213 + AT_rich Low_complexity Low_complexity 1 39 0 242 159 68 0 chr15 55748368 55748412 -45632109 + L2 LINE L2 3263 3309 -4 1645 175 4 0 chr15 55748977 55749278 -45631243 + AluJb SINE Alu 1 302 0 312 27 0 0 chr15 55749637 55749674 -45630847 + (TG)n Simple_repeat Simple_repeat 2 38 0 2100 147 0 13 chr15 55749686 55749998 -45630523 - AluJb SINE Alu -4 308 1 1874 152 14 21 chr15 55750016 55750306 -45630215 - AluJo SINE Alu -24 288 1 2718 192 79 104 chr15 55750638 55751905 -45628616 + L1MC5 LINE L1 6622 7856 -105 2126 125 3 3 chr15 55752378 55752681 -45627840 - AluSg SINE Alu -7 303 1 28 29 0 0 chr15 55753216 55753251 -45627270 + AT_rich Low_complexity Low_complexity 1 35 0 2400 70 0 13 chr15 55753738 55754040 -45626481 - AluY SINE Alu -13 298 1 22 56 0 0 chr15 55755066 55755102 -45625419 + AT_rich Low_complexity Low_complexity 1 36 0 2124 117 10 0 chr15 55756551 55756858 -45623663 + AluSg SINE Alu 1 310 0 26 0 0 0 chr15 55757598 55757624 -45622897 + AT_rich Low_complexity Low_complexity 1 26 0 2341 95 7 0 chr15 55757816 55758111 -45622410 - AluSx SINE Alu -15 297 1 2182 107 0 38 chr15 55759373 55759692 -45620829 - AluSx SINE Alu -5 307 1 24 0 0 0 chr15 55759855 55759879 -45620642 + AT_rich Low_complexity Low_complexity 1 24 0 2014 114 14 7 chr15 55760550 55760847 -45619674 - AluSx SINE Alu -11 301 3 1327 151 18 127 chr15 55760950 55761281 -45619240 + AluJo SINE Alu 2 296 -16 304 284 116 9 chr15 55761415 55761577 -45618944 - MIR SINE MIR -50 212 39 1670 161 3 20 chr15 55761671 55761976 -45618545 + AluSx SINE Alu 1 300 -12 1978 147 3 0 chr15 55761979 55762303 -45618218 + AluSx SINE Alu 1 325 0 2195 116 3 0 chr15 55762311 55762613 -45617908 + AluSx SINE Alu 1 303 -9 253 236 193 62 chr15 55762788 55762949 -45617572 - MIR SINE MIR -33 229 48 1725 128 4 0 chr15 55763406 55763648 -45616873 - AluSg/x SINE Alu -5 307 65 2193 125 0 3 chr15 55763732 55764037 -45616484 + AluSq SINE Alu 2 305 -8 414 119 86 4 chr15 55764078 55764323 -45616198 + (TA)n Simple_repeat Simple_repeat 1 265 0 2177 121 0 13 chr15 55764347 55764654 -45615867 - AluSx SINE Alu -9 303 1 1363 225 13 7 chr15 55764713 55765015 -45615506 + AluJb SINE Alu 1 304 -8 2274 102 0 16 chr15 55765438 55765753 -45614768 - AluSq SINE Alu -3 310 1 724 212 59 9 chr15 55766030 55766305 -45614216 - MER46C DNA MER2_type -9 329 5 852 199 13 0 chr15 55766466 55766622 -45613899 - AluJb SINE Alu -18 294 137 22 35 0 0 chr15 55766702 55766731 -45613790 + AT_rich Low_complexity Low_complexity 1 29 0 2003 150 0 0 chr15 55766976 55767276 -45613245 - AluSx SINE Alu -12 300 1 480 299 35 35 chr15 55767664 55767838 -45612683 + MER5B DNA MER1_type 4 177 -1 240 233 68 0 chr15 55768178 55768251 -45612270 + HAL1b LINE L1 1232 1309 -39 2231 114 3 0 chr15 55768252 55768550 -45611971 - AluSg SINE Alu -11 299 1 1997 114 3 88 chr15 55768866 55769208 -45611313 - AluSq SINE Alu 0 313 1 434 266 37 0 chr15 55769260 55769369 -45611152 - L2 LINE L2 -4 3309 3197 246 286 45 18 chr15 55770709 55770821 -45609700 - MIR3 SINE MIR -5 203 89 1911 84 76 0 chr15 55770918 55771204 -45609317 + AluSp SINE Alu 1 306 0 803 130 65 32 chr15 55771327 55771450 -45609071 - FLAM_C SINE Alu -6 127 1 29 0 0 0 chr15 55771641 55771670 -45608851 + AT_rich Low_complexity Low_complexity 1 29 0 1792 97 39 81 chr15 55771854 55772162 -45608359 - AluSx SINE Alu -17 295 1 829 150 43 7 chr15 55772306 55772446 -45608075 + FRAM SINE Alu 8 152 -24 320 69 14 42 chr15 55772446 55772518 -45608003 + (TA)n Simple_repeat Simple_repeat 1 70 0 33 0 0 0 chr15 55774929 55774962 -45605559 + GC_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr15 55775376 55775397 -45605124 + GC_rich Low_complexity Low_complexity 1 21 0 495 204 19 19 chr15 55776516 55776624 -45603897 - MIR SINE MIR -85 123 16 1530 107 21 41 chr15 55776687 55776930 -45603591 + AluSx SINE Alu 60 297 -15 2346 102 0 3 chr15 55776932 55777236 -45603285 + AluSx SINE Alu 3 305 -7 1881 120 4 11 chr15 55777301 55777577 -45602944 - AluJb SINE Alu 0 312 39 974 143 0 0 chr15 55777624 55777757 -45602764 - FLAM_C SINE Alu 0 133 1 2405 68 0 3 chr15 55777951 55778246 -45602275 - AluY SINE Alu -17 294 1 1929 116 3 73 chr15 55778521 55778849 -45601672 - AluSx SINE Alu -7 305 1 245 273 36 0 chr15 55778993 55779048 -45601473 + L1ME3A LINE L1 666 722 -5483 2170 113 3 0 chr15 55779107 55779409 -45601112 + AluSx SINE Alu 1 303 -9 645 257 54 21 chr15 55779487 55779772 -45600749 + L1ME3A LINE L1 1182 1512 -4862 2028 99 34 27 chr15 55779779 55780073 -45600448 - AluSc SINE Alu -13 296 1 2317 91 3 0 chr15 55780083 55780380 -45600141 - AluY SINE Alu -11 300 3 2203 113 10 0 chr15 55780383 55780685 -45599836 - AluSg SINE Alu -4 306 2 279 283 169 17 chr15 55780861 55781098 -45599423 + L1ME3A LINE L1 2031 2303 -4093 2377 90 0 3 chr15 55781152 55781463 -45599058 + AluSg SINE Alu 1 310 0 1387 130 12 83 chr15 55781541 55781623 -45598898 - MER46A DNA MER2_type -2495 236 150 2418 154 58 14 chr15 55781623 55782038 -45598483 - Tigger2a DNA MER2_type -1 433 1 1387 130 12 83 chr15 55782038 55782157 -45598364 - MER46A DNA MER2_type -2581 150 54 6352 96 28 3 chr15 55782157 55783207 -45597314 + L1PB1 LINE L1 5078 6148 -3 1387 130 12 83 chr15 55783207 55783257 -45597264 - MER46A DNA MER2_type -2677 54 2 2514 264 155 88 chr15 55783281 55784212 -45596309 + L1ME3A LINE L1 2446 3313 -2902 2377 74 10 3 chr15 55784212 55784508 -45596013 + AluY SINE Alu 1 298 -13 2514 264 155 88 chr15 55784508 55784547 -45595974 + L1ME3A LINE L1 3313 3348 -2867 1532 203 0 10 chr15 55784547 55784837 -45595684 + AluSx SINE Alu 1 287 -25 2514 264 155 88 chr15 55784837 55785025 -45595496 + L1ME3A LINE L1 3348 3522 -2693 1650 183 7 14 chr15 55785025 55785320 -45595201 + AluSx SINE Alu 3 295 -17 2514 264 155 88 chr15 55785320 55785491 -45595030 + L1ME3A LINE L1 3522 3680 -2535 2319 114 0 0 chr15 55785491 55785799 -45594722 + AluSg SINE Alu 1 308 -2 2514 264 155 88 chr15 55785799 55786213 -45594308 + L1ME3A LINE L1 3680 4065 -2150 1491 170 0 102 chr15 55786213 55786537 -45593984 - AluJo SINE Alu -21 291 1 2514 264 155 88 chr15 55786537 55786611 -45593910 + L1ME3A LINE L1 4065 4133 -2082 2168 105 0 3 chr15 55786611 55786928 -45593593 - AluSx SINE Alu 0 316 1 2514 264 155 88 chr15 55786928 55787069 -45593452 + L1ME3A LINE L1 4133 4263 -1952 2354 84 0 26 chr15 55787069 55787378 -45593143 - AluY SINE Alu -10 301 1 2225 118 0 3 chr15 55787379 55787676 -45592845 - AluSx SINE Alu -14 298 3 2514 264 155 88 chr15 55787676 55788120 -45592401 + L1ME3A LINE L1 4262 5018 -1197 421 253 112 24 chr15 55788498 55788747 -45591774 + L1ME3A LINE L1 5120 5390 -825 934 268 10 34 chr15 55788755 55789050 -45591471 + AluSx SINE Alu 1 288 -14 24 0 0 0 chr15 55789050 55789074 -45591447 + AT_rich Low_complexity Low_complexity 1 24 0 1679 173 0 46 chr15 55789343 55789666 -45590855 + AluSg SINE Alu 3 310 0 255 61 0 0 chr15 55789718 55789751 -45590770 + (TG)n Simple_repeat Simple_repeat 1 33 0 533 271 52 22 chr15 55789768 55790045 -45590476 + L1ME3A LINE L1 5429 5701 -538 676 250 12 42 chr15 55790047 55790238 -45590283 - AluJb SINE Alu 0 312 137 691 222 63 6 chr15 55790240 55790415 -45590106 + L1ME3A LINE L1 5696 5900 -339 2150 117 0 0 chr15 55790688 55790998 -45589523 - AluSx SINE Alu 0 310 1 1329 266 7 3 chr15 55791281 55791570 -45588951 + MLT1F LTR MaLR 12 301 -241 1359 176 96 79 chr15 55791689 55791842 -45588679 - L1M4 LINE L1 -449 5735 5586 186 43 0 0 chr15 55791842 55791865 -45588656 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2147 117 0 0 chr15 55791867 55792150 -45588371 - AluSx SINE Alu -29 283 1 1359 176 96 79 chr15 55792150 55792431 -45588090 - L1M4 LINE L1 -598 5586 5292 246 207 0 0 chr15 55792606 55792664 -45587857 - FLAM_A SINE Alu -1 132 75 690 168 0 9 chr15 55792664 55792777 -45587744 + AluJb SINE Alu 199 310 -2 572 158 11 32 chr15 55792775 55792870 -45587651 - AluJo SINE Alu -98 214 122 * 233 271 14 29 chr15 55792870 55792940 -45587581 - L1MC5 LINE L1 -48 7913 7845 2252 119 7 3 chr15 55793305 55793608 -45586913 - AluSq SINE Alu -9 304 1 1783 154 13 13 chr15 55794170 55794482 -45586039 + AluJb SINE Alu 1 312 0 2124 101 4 0 chr15 55794573 55794873 -45585648 - AluSx SINE Alu 0 306 6 1731 131 25 62 chr15 55794893 55795213 -45585308 - AluSx SINE Alu 0 312 5 520 209 0 27 chr15 55795304 55795414 -45585107 - FLAM_C SINE Alu -7 136 30 1651 136 37 83 chr15 55795419 55795567 -45584954 + AluJo SINE Alu 1 154 -158 2105 122 0 0 chr15 55795567 55795855 -45584666 + AluSx SINE Alu 1 288 -24 201 74 0 0 chr15 55795855 55795882 -45584639 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 1651 136 37 83 chr15 55795882 55796056 -45584465 + AluJo SINE Alu 152 309 -3 507 60 0 0 chr15 55796094 55796161 -45584360 + (TG)n Simple_repeat Simple_repeat 2 68 0 1875 165 7 3 chr15 55796162 55796465 -45584056 - AluJb SINE Alu -8 304 1 240 255 149 0 chr15 55796565 55796659 -45583862 + MIR SINE MIR 60 167 -95 371 291 9 9 chr15 55796718 55796828 -45583693 + MIR3 SINE MIR 69 178 -30 1398 190 7 34 chr15 55796865 55797160 -45583361 + AluJb SINE Alu 1 287 -25 518 230 24 24 chr15 55797162 55797288 -45583233 - AluJb SINE Alu -176 136 11 445 243 11 88 chr15 55797585 55797766 -45582755 + AluY SINE Alu 119 285 -26 180 0 0 0 chr15 55797766 55797786 -45582735 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 602 227 9 0 chr15 55797786 55797896 -45582625 - AluJb SINE Alu -191 121 11 771 161 8 15 chr15 55799043 55799173 -45581348 + L1MC3 LINE L1 7425 7553 -232 4778 259 66 65 chr15 55799310 55799523 -45580998 - L1MEc LINE L1 -3007 3208 2997 1927 95 8 0 chr15 55799523 55799775 -45580746 + AluSx SINE Alu 1 254 -58 2271 93 0 17 chr15 55799782 55800082 -45580439 - AluSq SINE Alu -18 295 1 4778 259 66 65 chr15 55800082 55800096 -45580425 - L1MEc LINE L1 -3223 2992 2980 2255 92 3 3 chr15 55800096 55800391 -45580130 - AluSx SINE Alu -17 295 1 4778 259 66 65 chr15 55800391 55800671 -45579850 - L1MEc LINE L1 -3235 2980 2702 2324 103 0 0 chr15 55800671 55800973 -45579548 + AluSx SINE Alu 1 302 -10 4778 259 66 65 chr15 55800973 55801022 -45579499 - L1MEc LINE L1 -3513 2702 2655 2163 88 3 11 chr15 55801022 55801306 -45579215 + AluSx SINE Alu 1 282 -30 180 0 0 0 chr15 55801309 55801329 -45579192 + (TAA)n Simple_repeat Simple_repeat 2 21 0 4778 259 66 65 chr15 55801329 55801570 -45578951 - L1MEc LINE L1 -3561 2654 2415 2251 118 0 0 chr15 55801570 55801875 -45578646 - AluSc SINE Alu -4 305 1 4778 259 66 65 chr15 55801875 55801919 -45578602 - L1MEc LINE L1 -3800 2415 2373 1465 151 0 0 chr15 55801919 55802131 -45578390 - AluJo SINE Alu -100 212 1 4778 259 66 65 chr15 55802131 55802980 -45577541 - L1MEc LINE L1 -3842 2373 1527 1703 172 54 3 chr15 55802980 55803276 -45577245 - AluJb SINE Alu -1 311 1 4778 259 66 65 chr15 55803276 55803379 -45577142 - L1MEc LINE L1 -4688 1527 1426 2081 129 10 3 chr15 55803379 55803681 -45576840 + AluSx SINE Alu 1 304 -8 4778 259 66 65 chr15 55803681 55803920 -45576601 - L1MEc LINE L1 -4789 1426 1189 2299 104 0 3 chr15 55803920 55804218 -45576303 - AluSg SINE Alu -13 297 1 4778 259 66 65 chr15 55804218 55804399 -45576122 - L1MEc LINE L1 -5026 1189 1010 1963 162 0 3 chr15 55804399 55804701 -45575820 - AluJb SINE Alu -11 301 1 4778 259 66 65 chr15 55804701 55805598 -45574923 - L1MEc LINE L1 -5205 1010 75 25 0 0 0 chr15 55805598 55805623 -45574898 + AT_rich Low_complexity Low_complexity 1 25 0 2317 104 0 7 chr15 55805695 55806003 -45574518 - AluSx SINE Alu -6 306 1 229 204 19 0 chr15 55806087 55806141 -45574380 + L1P5 LINE L1 5378 5432 -719 540 258 8 0 chr15 55806218 55806338 -45574183 - L2 LINE L2 -955 2359 2239 2024 134 3 10 chr15 55806715 55807014 -45573507 + AluSx SINE Alu 3 299 -13 328 316 71 49 chr15 55807088 55807677 -45572844 + L1MEd LINE L1 587 1188 -4931 268 263 166 60 chr15 55807687 55807994 -45572527 + L1MEd LINE L1 1265 1538 -4772 2408 81 3 0 chr15 55807994 55808289 -45572232 + AluSp SINE Alu 1 296 -17 348 83 0 0 chr15 55808289 55808337 -45572184 + (TA)n Simple_repeat Simple_repeat 2 49 0 268 263 166 60 chr15 55808337 55808464 -45572057 + L1MEd LINE L1 1538 1650 -4660 2113 105 0 26 chr15 55808464 55808768 -45571753 + AluSg SINE Alu 1 296 -14 268 263 166 60 chr15 55808768 55808867 -45571654 + L1MEd LINE L1 1650 1857 -4453 1825 154 41 3 chr15 55808904 55809197 -45571324 - AluJb SINE Alu -8 304 1 1935 178 16 22 chr15 55809300 55809666 -45570855 + L1M4 LINE L1 5406 5769 -405 331 259 35 0 chr15 55809693 55809708 -45570813 - HAL1 LINE L1 -1190 1317 1304 220 224 0 0 chr15 55809708 55809757 -45570764 + T-rich Low_complexity Low_complexity 1 49 0 331 259 35 0 chr15 55809757 55809778 -45570743 - HAL1 LINE L1 -1203 1304 1230 492 110 0 49 chr15 55809781 55809863 -45570658 - FLAM SINE Alu -11 132 55 527 259 124 24 chr15 55809893 55810183 -45570338 - HAL1 LINE L1 -1269 1238 920 1980 122 6 80 chr15 55810213 55810550 -45569971 + AluSx SINE Alu 1 312 0 2116 144 0 3 chr15 55810569 55810882 -45569639 + AluSx SINE Alu 1 312 0 2210 99 3 0 chr15 55811295 55811589 -45568932 - AluSp SINE Alu -18 295 1 836 171 14 0 chr15 55812369 55812515 -45568006 - FAM SINE Alu -1 48 1 221 269 19 0 chr15 55812801 55812853 -45567668 - MIR3 SINE MIR -7 201 149 1766 189 3 7 chr15 55812871 55813167 -45567354 - AluJb SINE Alu -17 295 1 771 69 0 0 chr15 55813658 55813760 -45566761 + (TTC)n Simple_repeat Simple_repeat 3 104 0 1707 106 34 8 chr15 55813780 55814016 -45566505 - AluSx SINE Alu -70 242 1 1980 133 7 0 chr15 55814341 55814627 -45565894 - AluSx SINE Alu -24 288 1 341 371 14 9 chr15 55815714 55815927 -45564594 - L2 LINE L2 -1639 1675 1462 400 141 41 0 chr15 55815968 55816089 -45564432 + (TA)n Simple_repeat Simple_repeat 2 127 0 297 349 71 18 chr15 55816602 55816883 -45563638 + L2 LINE L2 1380 1675 -1639 559 153 172 61 chr15 55816915 55817078 -45563443 - MER20 DNA MER1_type -2 217 37 558 135 60 0 chr15 55817094 55817227 -45563294 - Charlie5 DNA MER1_type -103 2509 2369 22 0 0 0 chr15 55817227 55817249 -45563272 + AT_rich Low_complexity Low_complexity 1 22 0 191 184 0 20 chr15 55817249 55817298 -45563223 + GA-rich Low_complexity Low_complexity 6 53 0 357 188 0 0 chr15 55817299 55817363 -45563158 - Charlie5 DNA MER1_type -2548 64 1 2172 85 0 3 chr15 55817581 55817916 -45562605 - AluY SINE Alu 0 334 1 2168 101 7 0 chr15 55817916 55818214 -45562307 - AluSx SINE Alu -12 300 1 515 288 117 6 chr15 55818299 55818523 -45561998 - MIR SINE MIR -6 256 19 259 138 15 31 chr15 55819099 55819164 -45561357 + (CGG)n Simple_repeat Simple_repeat 2 65 0 22 35 0 0 chr15 55821199 55821228 -45559293 + AT_rich Low_complexity Low_complexity 1 29 0 197 303 111 62 chr15 55821484 55821646 -45558875 + MIR3 SINE MIR 30 199 -9 1963 112 37 17 chr15 55821777 55822073 -45558448 + AluSx SINE Alu 1 302 -10 1837 123 40 27 chr15 55822413 55822713 -45557808 + AluSg SINE Alu 1 304 -6 654 267 175 35 chr15 55822773 55823088 -45557433 - L2 LINE L2 -17 3296 2938 369 262 39 80 chr15 55823208 55823437 -45557084 + L1MC5 LINE L1 7530 7737 -224 2022 111 7 4 chr15 55823437 55823743 -45556778 - AluSx SINE Alu 0 308 2 369 262 39 80 chr15 55823743 55823924 -45556597 + L1MC5 LINE L1 7737 7924 -37 1802 185 0 6 chr15 55823935 55824249 -45556272 + AluJb SINE Alu 1 312 0 2106 124 0 13 chr15 55824283 55824582 -45555939 + AluSx SINE Alu 1 295 -17 2031 105 0 92 chr15 55824626 55824941 -45555580 + AluSx SINE Alu 1 286 -26 181 298 158 35 chr15 55825038 55825152 -45555369 - L2 LINE L2 -4 3268 3141 2099 125 7 3 chr15 55825433 55825738 -45554783 - AluSx SINE Alu -6 306 1 909 228 76 55 chr15 55825745 55825873 -45554648 - L1MC4 LINE L1 0 8042 7918 2001 139 30 0 chr15 55825873 55826168 -45554353 - AluSx SINE Alu -8 304 1 909 228 76 55 chr15 55826168 55826473 -45554048 - L1MC4 LINE L1 -124 7918 7600 1048 208 88 87 chr15 55826478 55826865 -45553656 - L1MC4 LINE L1 -585 7226 6850 2183 74 7 33 chr15 55826865 55827164 -45553357 - AluSg1 SINE Alu -18 291 1 1048 208 88 87 chr15 55827164 55827299 -45553222 - L1MC4 LINE L1 -961 6850 6717 1944 145 0 32 chr15 55827690 55828001 -45552520 + AluSx SINE Alu 1 301 -11 267 31 0 0 chr15 55828045 55828077 -45552444 + (T)n Simple_repeat Simple_repeat 1 32 0 254 298 53 53 chr15 55828210 55828398 -45552123 - HAL1 LINE L1 -4 2503 2316 4322 186 78 57 chr15 55828658 55828935 -45551586 + Charlie1a DNA MER1_type 2 272 -2489 2208 98 3 13 chr15 55828935 55829240 -45551281 + AluSc SINE Alu 1 302 -7 4322 186 78 57 chr15 55829240 55829287 -45551234 + Charlie1a DNA MER1_type 272 317 -2444 2191 108 0 16 chr15 55829287 55829602 -45550919 - AluSg SINE Alu 0 310 1 4322 186 78 57 chr15 55829602 55829645 -45550876 + Charlie1a DNA MER1_type 317 358 -2403 1358 116 19 0 chr15 55829645 55829861 -45550660 - L1PA13 LINE L1 0 6163 5944 4322 186 78 57 chr15 55829861 55830742 -45549779 + Charlie1a DNA MER1_type 358 1219 -1542 2203 106 7 0 chr15 55830742 55831035 -45549486 - AluSx SINE Alu -17 295 1 4322 186 78 57 chr15 55831035 55831102 -45549419 + Charlie1a DNA MER1_type 1219 1283 -1478 2043 163 89 0 chr15 55831102 55831494 -45549027 - MSTA LTR MaLR -1 427 1 4322 186 78 57 chr15 55831494 55831544 -45548977 + Charlie1a DNA MER1_type 1283 1400 -55 1491 171 4 0 chr15 55831550 55831790 -45548731 - AluJb SINE Alu -3 309 69 2019 129 10 0 chr15 55831825 55832120 -45548401 + AluSx SINE Alu 1 298 -14 243 261 182 11 chr15 55832231 55832319 -45548202 - L2 LINE L2 -8 3305 3203 637 300 91 0 chr15 55832446 55832666 -45547855 - L2 LINE L2 -254 3059 2820 258 240 50 10 chr15 55832667 55832767 -45547754 - HAL1 LINE L1 -1182 1325 1222 981 136 298 15 chr15 55833190 55833455 -45547066 - Tigger7 DNA MER2_type 0 2487 2148 590 209 9 0 chr15 55833472 55833587 -45546934 - Tigger7 DNA MER2_type -589 116 1 21 0 0 0 chr15 55833943 55833964 -45546557 + AT_rich Low_complexity Low_complexity 1 21 0 310 282 153 59 chr15 55834103 55834341 -45546180 + L2 LINE L2 2787 3044 -269 571 194 23 16 chr15 55834376 55834505 -45546016 - FAM SINE Alu -7 42 1 1648 172 38 0 chr15 55834511 55834801 -45545720 - AluJb SINE Alu -11 301 1 1941 152 0 10 chr15 55834801 55835097 -45545424 - AluJb SINE Alu -18 294 2 548 231 130 6 chr15 55835100 55835269 -45545252 + L2 LINE L2 3118 3307 -6 604 141 99 16 chr15 55836593 55836714 -45543807 - FLAM_C SINE Alu -12 131 1 441 276 92 7 chr15 55837217 55837369 -45543152 - MIR SINE MIR -58 204 40 926 233 49 28 chr15 55837603 55837891 -45542630 - L1ME2 LINE L1 -10 6154 5861 265 204 88 26 chr15 55837901 55838014 -45542507 - L1MC4 LINE L1 -1 8041 7922 2079 101 0 7 chr15 55838184 55838461 -45542060 - AluSg1 SINE Alu -14 295 21 1613 238 142 47 chr15 55838473 55839610 -45540911 - L1ME1 LINE L1 -9 6226 4971 1843 151 3 10 chr15 55839610 55839914 -45540607 - AluJo SINE Alu -10 302 1 1613 238 142 47 chr15 55839914 55840022 -45540499 - L1ME1 LINE L1 -1264 4971 4875 793 201 98 49 chr15 55840042 55840344 -45540177 - L1ME1 LINE L1 -4150 2246 1924 2149 102 11 7 chr15 55840344 55840654 -45539867 - AluSx SINE Alu 0 311 1 793 201 98 49 chr15 55840654 55840678 -45539843 - L1ME1 LINE L1 -4472 1924 1903 1904 170 7 3 chr15 55841068 55841368 -45539153 + AluJb SINE Alu 1 301 -11 243 313 35 26 chr15 55841397 55841512 -45539009 - L3 LINE CR1 -816 761 646 458 159 192 0 chr15 55841632 55841783 -45538738 - Charlie1 DNA MER1_type -149 2612 2433 2202 147 0 0 chr15 55841785 55842097 -45538424 - AluSx SINE Alu 0 312 1 2273 116 0 0 chr15 55842990 55843293 -45537228 + AluSx SINE Alu 1 303 -9 2184 130 0 13 chr15 55843710 55844025 -45536496 + AluSx SINE Alu 1 311 -1 608 140 9 18 chr15 55844175 55844289 -45536232 + MLT1B LTR MaLR 1 113 -277 629 150 23 2 chr15 55844394 55844517 -45536004 - L1MB2 LINE L1 -209 5961 5830 216 0 0 0 chr15 55844534 55844558 -45535963 + (T)n Simple_repeat Simple_repeat 1 24 0 2348 93 20 0 chr15 55844909 55845211 -45535310 - AluSg SINE Alu -2 308 1 1322 128 0 0 chr15 55845224 55845412 -45535109 - AluSg/x SINE Alu 0 310 123 225 140 53 0 chr15 55845603 55845660 -45534861 + L1MB7 LINE L1 6125 6184 0 989 235 6 35 chr15 55845760 55846071 -45534450 - L1MA10 LINE L1 -4 6330 6029 2333 87 0 16 chr15 55846344 55846655 -45533866 + AluY SINE Alu 2 307 -4 1900 139 24 10 chr15 55846665 55846953 -45533568 + AluSx SINE Alu 1 292 -20 590 165 0 0 chr15 55847457 55847548 -45532973 - AluJ/FLAM SINE Alu -221 91 1 1414 179 155 18 chr15 55847613 55847722 -45532799 - L1MC3 LINE L1 -646 7139 7046 1946 148 0 10 chr15 55847722 55848026 -45532495 - AluSx SINE Alu -11 301 1 1414 179 155 18 chr15 55848026 55848296 -45532225 - L1MC3 LINE L1 -739 7046 6708 1588 159 27 17 chr15 55848694 55848989 -45531532 - AluJb SINE Alu -14 298 1 1459 185 76 0 chr15 55849796 55850072 -45530449 - AluSx SINE Alu -15 297 1 186 43 0 0 chr15 55850087 55850110 -45530411 + (TA)n Simple_repeat Simple_repeat 1 23 0 1964 104 0 0 chr15 55850111 55850360 -45530161 - AluSc SINE Alu -17 292 44 2711 136 44 0 chr15 55850643 55851071 -45529450 + MER1A DNA MER1_type 1 447 -82 206 278 37 0 chr15 55851348 55851402 -45529119 + MIR3 SINE MIR 147 202 -6 190 247 68 41 chr15 55851975 55852048 -45528473 + L2 LINE L2 3224 3298 -15 785 179 42 47 chr15 55852235 55852425 -45528096 + MER20 DNA MER1_type 31 219 0 435 259 282 6 chr15 55852453 55852627 -45527894 + MIR SINE MIR 38 259 -3 540 211 114 0 chr15 55852631 55852745 -45527776 + L2 LINE L2 3187 3313 0 277 346 19 31 chr15 55852796 55852892 -45527629 - L2 LINE L2 -947 2367 2272 1845 163 48 0 chr15 55852892 55853186 -45527335 + AluJb SINE Alu 1 308 -4 277 346 19 31 chr15 55853186 55853248 -45527273 - L2 LINE L2 -1042 2272 2211 1426 160 56 35 chr15 55854138 55854449 -45526072 + AluJb SINE Alu 1 317 0 192 281 177 0 chr15 55854490 55854586 -45525935 + MIR SINE MIR 54 166 -96 775 250 6 0 chr15 55854590 55854754 -45525767 - AluJb SINE Alu -20 292 128 664 167 8 45 chr15 55854777 55854909 -45525612 - AluSq/x SINE Alu -181 132 6 24 32 0 0 chr15 55854913 55854944 -45525577 + AT_rich Low_complexity Low_complexity 1 31 0 514 247 0 0 chr15 55855064 55855157 -45525364 + FLAM_A SINE Alu 2 94 -48 364 254 84 14 chr15 55855554 55855696 -45524825 + L1M4 LINE L1 5015 5166 -980 1815 156 35 11 chr15 55855698 55856069 -45524452 - L1M3 LINE L1 -509 5671 5292 868 136 0 57 chr15 55856099 55856239 -45524282 - AluJb SINE Alu -180 132 1 733 180 16 36 chr15 55856247 55856441 -45524080 - L1M3 LINE L1 -858 5288 5099 27 29 0 0 chr15 55856956 55856990 -45523531 + AT_rich Low_complexity Low_complexity 1 34 0 490 336 106 0 chr15 55857272 55857489 -45523032 + MIR SINE MIR 23 262 0 1164 175 14 31 chr15 55857748 55857971 -45522550 - MER20 DNA MER1_type 0 219 1 2149 106 0 10 chr15 55860794 55861087 -45519434 + AluSg SINE Alu 1 290 -20 287 262 148 54 chr15 55862159 55862308 -45518213 - MER5B DNA MER1_type -9 169 7 599 237 0 30 chr15 55862321 55862456 -45518065 + FLAM_A SINE Alu 3 133 0 23 0 0 0 chr15 55862546 55862569 -45517952 + AT_rich Low_complexity Low_complexity 1 23 0 789 129 27 142 chr15 55863120 55863287 -45517234 + L1MB2 LINE L1 5934 6070 -101 1433 162 65 47 chr15 55863287 55863565 -45516956 - AluJb SINE Alu -29 283 1 789 129 27 142 chr15 55863565 55863622 -45516899 + L1MB2 LINE L1 6070 6132 -39 2750 208 38 45 chr15 55863778 55864496 -45516025 - L1ME1 LINE L1 -32 6134 5412 1790 176 3 6 chr15 55864496 55864809 -45515712 + AluJb SINE Alu 1 312 0 2750 208 38 45 chr15 55864809 55864857 -45515664 - L1ME1 LINE L1 -754 5412 5365 1735 200 3 0 chr15 55864857 55865157 -45515364 - AluJb SINE Alu -11 301 1 2750 208 38 45 chr15 55865157 55865248 -45515273 - L1ME1 LINE L1 -801 5365 5275 1229 194 171 8 chr15 55865248 55865511 -45515010 + AluSx SINE Alu 1 306 -6 2750 208 38 45 chr15 55865511 55865860 -45514661 - L1ME1 LINE L1 -891 5275 4925 1829 165 3 7 chr15 55865878 55866187 -45514334 + AluJb SINE Alu 1 308 -4 21 57 0 0 chr15 55866254 55866289 -45514232 + AT_rich Low_complexity Low_complexity 1 35 0 2277 91 6 22 chr15 55866882 55867200 -45513321 + AluSq SINE Alu 1 313 0 2152 109 0 26 chr15 55868040 55868342 -45512179 + AluSq SINE Alu 1 294 -19 210 211 0 0 chr15 55868405 55868443 -45512078 - MIR SINE MIR -75 133 96 430 204 19 0 chr15 55868671 55868774 -45511747 + L1ME LINE L1 5638 5742 -424 1981 134 3 7 chr15 55868914 55869213 -45511308 + AluSq SINE Alu 1 298 -15 302 254 82 9 chr15 55869335 55869445 -45511076 + L1MC/D LINE L1 4491 4608 -1538 302 325 63 29 chr15 55869552 55869930 -45510591 + L1MC/D LINE L1 4757 5147 -999 1793 158 3 7 chr15 55869960 55870244 -45510277 + AluJb SINE Alu 17 299 -13 628 203 33 118 chr15 55870322 55870628 -45509893 + L1MC/D LINE L1 5263 5542 -2266 2418 92 0 3 chr15 55871146 55871451 -45509070 - AluSq SINE Alu -9 304 1 1680 141 13 61 chr15 55872306 55872619 -45507902 - AluJb SINE Alu -2 310 13 32 26 0 0 chr15 55872619 55872658 -45507863 + AT_rich Low_complexity Low_complexity 1 39 0 2236 132 0 0 chr15 55873069 55873372 -45507149 + AluSx SINE Alu 1 303 -9 203 211 56 28 chr15 55873441 55873583 -45506938 + (TTATA)n Simple_repeat Simple_repeat 5 150 0 * 312 192 51 40 chr15 55873491 55873668 -45506853 + (TA)n Simple_repeat Simple_repeat 2 180 0 1484 78 37 14 chr15 55874312 55874530 -45505991 - L1PB1 LINE L1 -1 6150 5928 2115 135 0 0 chr15 55874546 55874843 -45505678 - AluSx SINE Alu -15 297 1 455 285 112 11 chr15 55874953 55875132 -45505389 - MIR SINE MIR -37 225 29 2077 114 7 0 chr15 55875263 55875552 -45504969 - AluSx SINE Alu -21 291 1 2372 81 0 3 chr15 55876357 55876655 -45503866 + AluSx SINE Alu 1 297 -15 512 316 84 48 chr15 55876756 55877171 -45503350 - L1 LINE L1 -1680 4466 4037 227 363 0 11 chr15 55877597 55877688 -45502833 + L2 LINE L2 2395 2484 -830 310 282 107 10 chr15 55877713 55877816 -45502705 - L2 LINE L2 -12 3301 3189 299 176 0 0 chr15 55877924 55877975 -45502546 - LTR16B LTR ERVL 0 464 414 2392 132 66 2 chr15 55878077 55878517 -45502004 - L1MB3 LINE L1 -17 6166 5699 310 105 18 0 chr15 55878517 55878574 -45501947 - Alu SINE Alu -239 60 3 2249 102 3 0 chr15 55879227 55879532 -45500989 - AluSp SINE Alu -7 306 1 855 155 72 107 chr15 55880936 55881028 -45499493 - L1MB8 LINE L1 -71 6107 6013 2253 101 3 16 chr15 55881028 55881335 -45499186 - AluSx SINE Alu -9 303 1 1996 85 64 4 chr15 55881339 55881620 -45498901 - AluSq SINE Alu -15 298 1 855 155 72 107 chr15 55881620 55881812 -45498709 - L1MB8 LINE L1 -168 6010 5828 978 152 123 9 chr15 55881814 55882025 -45498496 - Tigger7 DNA MER2_type -2 2585 2351 1549 152 75 50 chr15 55882078 55882284 -45498237 - L1MB8 LINE L1 -348 5830 5610 2149 121 3 3 chr15 55882284 55882582 -45497939 - AluSx SINE Alu -14 298 1 1549 152 75 50 chr15 55882582 55882736 -45497785 - L1MB8 LINE L1 -568 5610 5461 527 211 152 25 chr15 55883194 55883398 -45497123 + L1ME3A LINE L1 5941 6170 0 2201 129 0 0 chr15 55885447 55885741 -45494780 - AluSx SINE Alu -18 294 1 1418 204 4 0 chr15 55885921 55886185 -45494336 - AluJb SINE Alu -9 303 39 348 251 61 20 chr15 55887643 55887889 -45492632 - L1MC4a LINE L1 -1962 5846 5557 469 242 53 23 chr15 55887925 55888057 -45492464 - MIR SINE MIR 0 262 127 203 301 27 55 chr15 55888219 55888292 -45492229 - MIR SINE MIR -97 111 41 2271 112 39 17 chr15 55888415 55888771 -45491750 - THE1B LTR MaLR 0 364 1 1583 88 22 0 chr15 55888771 55888999 -45491522 - THE1B-int LTR MaLR 0 1580 1348 * 2351 122 25 5 chr15 55888997 55889510 -45491011 - THE1B-int LTR MaLR -1017 563 1 1927 140 26 69 chr15 55889510 55889571 -45490950 - THE1B LTR MaLR 0 364 302 1798 120 68 20 chr15 55889571 55889863 -45490658 - AluSx SINE Alu -6 306 1 1927 140 26 69 chr15 55889863 55890180 -45490341 - THE1B LTR MaLR -62 302 2 1600 171 13 23 chr15 55890324 55890633 -45489888 - AluJb SINE Alu 0 312 7 2430 65 3 0 chr15 55891059 55891350 -45489171 + AluSp SINE Alu 2 293 -20 231 275 131 0 chr15 55892013 55892173 -45488348 - L1MC4 LINE L1 -1 8041 7861 226 193 0 70 chr15 55892229 55892286 -45488235 - L1MC5 LINE L1 -603 7358 7306 1382 220 35 77 chr15 55892403 55892475 -45488046 - L1MC5 LINE L1 -722 7239 7166 2279 96 3 0 chr15 55892475 55892767 -45487754 - AluSp SINE Alu -20 293 1 1382 220 35 77 chr15 55892767 55893225 -45487296 - L1MC5 LINE L1 -795 7166 6736 2161 106 3 3 chr15 55893225 55893518 -45487003 - AluSc SINE Alu -16 293 1 1382 220 35 77 chr15 55893518 55893609 -45486912 - L1MC5 LINE L1 -1225 6736 6643 1208 214 3 64 chr15 55893623 55893936 -45486585 - AluJo SINE Alu -17 295 2 272 89 22 0 chr15 55894184 55894229 -45486292 + MADE1 DNA Mariner 35 80 0 380 301 48 38 chr15 55894272 55894458 -45486063 - L1MC4a LINE L1 -1520 6288 6101 549 240 25 99 chr15 55894643 55894783 -45485738 - L1MC4a LINE L1 -1981 5827 5717 2219 88 3 27 chr15 55894783 55895079 -45485442 + AluSg SINE Alu 7 295 -15 549 240 25 99 chr15 55895079 55895221 -45485300 - L1MC4a LINE L1 -2091 5717 5566 2495 63 0 3 chr15 55895428 55895731 -45484790 + AluY SINE Alu 3 304 -7 288 171 158 0 chr15 55895789 55895871 -45484650 - Charlie4 DNA MER1_type -1862 99 5 313 197 57 74 chr15 55896083 55896205 -45484316 + MLT1K LTR MaLR 469 588 0 366 284 167 12 chr15 55896622 55896784 -45483737 - MIR SINE MIR -73 189 3 1332 159 0 19 chr15 55896899 55897106 -45483415 + AluJb SINE Alu 3 205 -107 2205 92 7 3 chr15 55897500 55897795 -45482726 + AluSp SINE Alu 1 296 -17 274 231 17 29 chr15 55898276 55898514 -45482007 + CT-rich Low_complexity Low_complexity 1 235 0 200 206 0 0 chr15 55898516 55898550 -45481971 + polypyrimidine Low_complexity Low_complexity 5 38 0 959 125 0 0 chr15 55899278 55899422 -45481099 + AluSg/x SINE Alu 169 312 0 2092 118 4 0 chr15 55899502 55899774 -45480747 + AluSx SINE Alu 6 278 -34 265 106 0 0 chr15 55899781 55899828 -45480693 - AluSp/q SINE Alu -2 301 255 2287 107 3 0 chr15 55899967 55900266 -45480255 + AluSg SINE Alu 1 300 -10 670 214 15 8 chr15 55901215 55901346 -45479175 - FLAM_A SINE Alu 0 133 2 2455 62 0 7 chr15 55902189 55902494 -45478027 + AluY SINE Alu 1 303 -8 1719 146 16 42 chr15 55902574 55902883 -45477638 + AluJb SINE Alu 1 301 -11 11274 121 33 108 chr15 55902985 55903624 -45476897 - Tigger1 DNA MER2_type 0 2418 1733 2352 63 17 7 chr15 55903624 55903925 -45476596 - AluY SINE Alu -7 304 1 11274 121 33 108 chr15 55903925 55904079 -45476442 - Tigger1 DNA MER2_type -685 1733 1569 1421 210 57 4 chr15 55904079 55904360 -45476161 + AluJb SINE Alu 1 296 -16 1829 149 7 39 chr15 55904364 55904673 -45475848 + AluSx SINE Alu 3 301 -11 11274 121 33 108 chr15 55904673 55906427 -45474094 - Tigger1 DNA MER2_type -852 1566 55 919 124 0 0 chr15 55907751 55907880 -45472641 + FLAM_C SINE Alu 1 129 -4 323 229 131 46 chr15 55908703 55908856 -45471665 - L1MC4a LINE L1 -1911 5897 5732 286 232 99 63 chr15 55908859 55909001 -45471520 - L1MC4a LINE L1 -2142 5666 5520 540 255 55 21 chr15 55909199 55909344 -45471177 + MIR SINE MIR 1 150 -112 926 229 0 0 chr15 55909568 55909743 -45470778 + FAM SINE Alu 1 175 0 2384 91 0 3 chr15 55909749 55910056 -45470465 + AluSx SINE Alu 1 306 -6 356 273 153 0 chr15 55911060 55911210 -45469311 + L1M4 LINE L1 5209 5381 -765 2316 101 0 3 chr15 55911288 55911595 -45468926 - AluSx SINE Alu -6 306 1 680 219 9 0 chr15 55912538 55912652 -45467869 + FLAM_A SINE Alu 2 116 -17 780 199 47 47 chr15 55912720 55912891 -45467630 + AluJo SINE Alu 112 282 -30 1266 175 14 5 chr15 55912926 55913143 -45467378 + AluJo SINE Alu 9 227 -85 297 211 18 0 chr15 55913143 55913200 -45467321 - AluJo/FRAM SINE Alu -56 246 189 * 350 132 0 0 chr15 55913198 55913251 -45467270 + AluJo SINE Alu 230 282 -20 271 248 75 143 chr15 55913705 55913838 -45466683 + MER58A DNA MER1_type 5 128 0 37 39 0 0 chr15 55914007 55914058 -45466463 + AT_rich Low_complexity Low_complexity 1 51 0 1831 194 31 18 chr15 55914528 55914909 -45465612 - L1MA6 LINE L1 0 6300 5915 2287 110 3 0 chr15 55916167 55916468 -45464053 - AluSx SINE Alu -10 302 1 213 337 117 10 chr15 55917085 55917290 -45463231 - L2 LINE L2 -934 2380 2154 1357 134 49 49 chr15 55917520 55917766 -45462755 - Tigger2a DNA MER2_type -188 246 1 2732 181 133 9 chr15 55918587 55919160 -45461361 + MER82 DNA MER2_type 10 653 0 282 29 0 0 chr15 55920149 55920184 -45460337 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 2129 115 3 0 chr15 55920191 55920478 -45460043 - AluSx SINE Alu -24 288 1 776 110 0 0 chr15 55920724 55920824 -45459697 + AluJ/FLAM SINE Alu 1 100 -212 275 278 17 35 chr15 55921443 55921558 -45458963 - L1MC/D LINE L1 -1955 5853 5741 2046 144 72 22 chr15 55921660 55921980 -45458541 - MER1B DNA MER1_type 0 337 2 180 0 0 0 chr15 55922386 55922406 -45458115 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1631 184 3 26 chr15 55922662 55922967 -45457554 + AluJo SINE Alu 3 300 -12 847 180 41 6 chr15 55923287 55923459 -45457062 - AluJb SINE Alu 0 312 135 2215 83 0 4 chr15 55927559 55927836 -45452685 + AluY SINE Alu 15 290 -21 890 167 0 0 chr15 55928043 55928205 -45452316 - AluSg/x SINE Alu 0 303 142 1893 112 45 25 chr15 55928323 55928609 -45451912 + AluSx SINE Alu 5 296 -16 588 193 67 67 chr15 55928664 55928814 -45451707 - MLT1F1 LTR MaLR -32 535 386 2188 121 16 0 chr15 55928816 55929123 -45451398 - AluSx SINE Alu 0 312 1 189 0 0 0 chr15 55929127 55929148 -45451373 + (T)n Simple_repeat Simple_repeat 1 21 0 1617 244 21 10 chr15 55929190 55929575 -45450946 - MLT1F1 LTR MaLR -174 393 5 1486 88 0 10 chr15 55929649 55929843 -45450678 - AluSq SINE Alu -62 251 60 824 277 80 54 chr15 55930176 55930641 -45449880 - MLT1H LTR MaLR 0 549 73 180 0 0 0 chr15 55930641 55930661 -45449860 + (A)n Simple_repeat Simple_repeat 1 20 0 1802 87 87 47 chr15 55930876 55931153 -45449368 - AluY SINE Alu -23 288 1 1640 141 85 4 chr15 55931191 55931461 -45449060 + AluJb SINE Alu 1 292 -20 1646 173 14 0 chr15 55931530 55931813 -45448708 + AluJo SINE Alu 19 305 -7 1252 171 9 5 chr15 55931878 55932095 -45448426 + AluJo SINE Alu 85 302 -10 2255 116 0 0 chr15 55932487 55932788 -45447733 - AluSx SINE Alu -11 301 1 216 267 0 35 chr15 55932835 55932921 -45447600 + CT-rich Low_complexity Low_complexity 2 84 0 5347 129 46 17 chr15 55933074 55933725 -45446796 - L1PB3 LINE L1 -3 6151 5456 1719 119 6 104 chr15 55933725 55934060 -45446461 - AluJo SINE Alu -10 302 1 5347 129 46 17 chr15 55934060 55934448 -45446073 - L1PB3 LINE L1 -698 5456 5081 332 273 0 26 chr15 55934457 55934534 -45445987 - L2 LINE L2 -6 3266 3192 909 207 0 0 chr15 55937798 55937962 -45442559 + FRAM SINE Alu 1 163 -13 267 217 17 0 chr15 55938333 55938393 -45442128 - L2 LINE L2 -670 2644 2584 1694 104 100 0 chr15 55939017 55939266 -45441255 - AluSx SINE Alu -32 280 7 502 223 51 13 chr15 55939408 55939565 -45440956 + L1ME4a LINE L1 5782 5944 -177 2327 68 10 10 chr15 55939650 55939961 -45440560 + AluY SINE Alu 1 311 0 224 255 106 11 chr15 55940835 55940929 -45439592 - L2 LINE L2 -32 3240 3138 699 176 0 0 chr15 55941171 55941279 -45439242 - FLAM_C SINE Alu -34 109 2 1890 173 13 0 chr15 55941791 55942098 -45438423 - AluJo SINE Alu -1 311 1 2310 96 0 7 chr15 55942298 55942591 -45437930 - AluSg SINE Alu -19 291 1 22 56 0 0 chr15 55942599 55942635 -45437886 + AT_rich Low_complexity Low_complexity 1 36 0 2449 65 0 0 chr15 55942699 55942991 -45437530 + AluY SINE Alu 1 292 -19 26 50 0 0 chr15 55943048 55943088 -45437433 + AT_rich Low_complexity Low_complexity 1 40 0 429 288 27 38 chr15 55943320 55943504 -45437017 - L2 LINE L2 -19 3294 3113 1670 138 90 14 chr15 55943659 55943948 -45436573 - AluSx SINE Alu -1 311 1 542 223 95 20 chr15 55944069 55944217 -45436304 - L2 LINE L2 -433 2881 2723 258 291 13 0 chr15 55945188 55945267 -45435254 + MIR3 SINE MIR 112 191 -17 1893 164 0 13 chr15 55945670 55945974 -45434547 - AluJb SINE Alu -8 304 5 273 309 90 27 chr15 55946283 55946471 -45434050 + MIR SINE MIR 46 245 -17 1818 167 10 10 chr15 55947416 55947715 -45432806 - AluJb SINE Alu -13 299 1 596 183 0 58 chr15 55947765 55947885 -45432636 + FLAM_A SINE Alu 4 116 -17 1067 269 103 47 chr15 55947966 55948050 -45432471 + L1MC4 LINE L1 5801 5879 -2014 2449 206 105 18 chr15 55948050 55948354 -45432167 - REP3 LTR ERV 0 562 286 1894 147 23 3 chr15 55948354 55948654 -45431867 + AluSx SINE Alu 1 306 -6 2449 206 105 18 chr15 55948654 55948864 -45431657 - REP3 LTR ERV -276 286 3 1067 269 103 47 chr15 55948864 55949201 -45431320 + L1MC4 LINE L1 5879 6196 -1697 1508 137 4 4 chr15 55949201 55949427 -45431094 + AluJo SINE Alu 79 304 -8 1067 269 103 47 chr15 55949427 55949663 -45430858 + L1MC4 LINE L1 6196 6417 -1476 1754 159 7 7 chr15 55949663 55949953 -45430568 - AluJo SINE Alu -22 290 1 1067 269 103 47 chr15 55949953 55950291 -45430230 + L1MC4 LINE L1 6417 6949 -944 704 151 28 0 chr15 55950291 55950397 -45430124 + FRAM SINE Alu 1 108 -68 1234 269 118 12 chr15 55950421 55950989 -45429532 + L1MC4 LINE L1 6937 7564 -478 488 327 57 8 chr15 55951019 55951267 -45429254 + L1MC4 LINE L1 7781 8040 -2 1612 164 7 46 chr15 55951460 55951595 -45428926 + AluJo SINE Alu 1 140 -172 2345 122 0 0 chr15 55951595 55951907 -45428614 + AluSx SINE Alu 1 312 0 1612 164 7 46 chr15 55951907 55952076 -45428445 + AluJo SINE Alu 140 293 -19 2093 78 92 0 chr15 55952187 55952468 -45428053 - AluSx SINE Alu -5 307 1 1862 179 13 0 chr15 55952471 55952779 -45427742 - AluJo SINE Alu 0 312 1 32357 97 12 30 chr15 55955495 55961337 -45419184 - L1PA7 LINE L1 -1 6153 430 1657 153 7 27 chr15 55961337 55961738 -45418783 + L1P3 LINE L1 67 631 -5830 338 312 109 22 chr15 55962650 55962788 -45417733 + MIR SINE MIR 110 259 -3 1524 183 32 0 chr15 55963046 55963325 -45417196 + AluJo SINE Alu 5 292 -20 207 306 120 0 chr15 55963326 55963434 -45417087 + MIR SINE MIR 24 144 -118 299 244 109 25 chr15 55964023 55964142 -45416379 + MLT1J LTR MaLR 114 242 -269 593 167 0 0 chr15 55964352 55964442 -45416079 + AluJ/FLAM SINE Alu 2 91 -221 1965 140 17 90 chr15 55965866 55966287 -45414234 - MLT1B LTR MaLR 0 390 1 332 344 65 45 chr15 55967663 55967971 -45412550 + MLT1K LTR MaLR 103 416 -172 190 396 28 0 chr15 55968358 55968464 -45412057 + MIR SINE MIR 2 110 -152 389 277 26 45 chr15 55968883 55969038 -45411483 - L1ME3A LINE L1 -320 5850 5699 626 180 81 75 chr15 55969961 55970009 -45410512 - MER20 DNA MER1_type -4 215 169 195 42 0 0 chr15 55970009 55970033 -45410488 + (TG)n Simple_repeat Simple_repeat 1 24 0 626 180 81 75 chr15 55970033 55970145 -45410376 - MER20 DNA MER1_type -50 169 54 1876 128 22 95 chr15 55971214 55971457 -45409064 + MER2 DNA MER2_type 4 263 -81 2140 116 3 0 chr15 55971457 55971759 -45408762 + AluSx SINE Alu 1 303 -9 2265 63 0 23 chr15 55971759 55972060 -45408461 + AluY SINE Alu 1 294 -17 1876 128 22 95 chr15 55972060 55972183 -45408338 + MER2 DNA MER2_type 261 344 0 659 200 12 55 chr15 55972731 55972896 -45407625 + L1M4 LINE L1 4023 4180 -1966 489 169 0 0 chr15 55972898 55972981 -45407540 + MER49 LTR ERV1 182 264 -659 257 294 0 15 chr15 55973564 55973632 -45406889 - MIR SINE MIR -35 227 161 2191 100 0 0 chr15 55974108 55974407 -45406114 - AluSx SINE Alu -13 299 1 923 127 0 0 chr15 55974407 55974533 -45405988 - AluJo/FLAM SINE Alu -174 128 3 2261 91 3 0 chr15 55974786 55975083 -45405438 - AluSp SINE Alu -15 298 1 1732 203 78 5 chr15 55975233 55975398 -45405123 - MER63B DNA MER1_type -632 430 278 1614 78 9 22 chr15 55975398 55975630 -45404891 - AluSx SINE Alu -83 229 1 1732 203 78 5 chr15 55975630 55975863 -45404658 - MER63B DNA MER1_type -784 278 3 778 238 6 0 chr15 55975953 55976113 -45404408 - FRAM SINE Alu -7 169 9 1714 154 7 0 chr15 55976250 55976553 -45403968 - AluSx SINE Alu 0 305 1 193 129 71 0 chr15 55976633 55976703 -45403818 + (TA)n Simple_repeat Simple_repeat 2 76 0 2012 109 26 26 chr15 55977256 55977568 -45402953 + AluSx SINE Alu 1 312 0 340 248 8 112 chr15 55978034 55978159 -45402362 - MIR SINE MIR -70 192 81 2427 77 0 0 chr15 55978983 55979294 -45401227 - AluY SINE Alu 0 311 1 879 164 146 0 chr15 55980685 55980850 -45399671 + MER5A DNA MER1_type 1 189 0 348 83 0 0 chr15 55980949 55980997 -45399524 + (CA)n Simple_repeat Simple_repeat 2 49 0 1946 114 0 17 chr15 55981077 55981375 -45399146 + AluSc SINE Alu 1 293 -16 2076 99 10 14 chr15 55981563 55981699 -45398822 + AluSx SINE Alu 1 136 -176 1955 101 21 3 chr15 55981699 55981822 -45398699 + AluSc SINE Alu 1 120 -189 243 0 0 0 chr15 55981822 55981849 -45398672 + (CA)n Simple_repeat Simple_repeat 2 28 0 1955 101 21 3 chr15 55981849 55982012 -45398509 + AluSc SINE Alu 120 292 -17 2076 99 10 14 chr15 55982012 55982168 -45398353 + AluSx SINE Alu 136 292 -20 210 195 24 0 chr15 55982422 55982463 -45398058 - MIR3 SINE MIR -22 186 145 274 376 47 20 chr15 55982543 55982692 -45397829 - MIR SINE MIR -29 233 81 504 315 92 56 chr15 55982734 55983039 -45397482 - L3 LINE CR1 -85 1492 1177 228 196 43 0 chr15 55983811 55983857 -45396664 + MIR SINE MIR 93 140 -122 349 93 19 0 chr15 55983924 55983978 -45396543 - L1MA9 LINE L1 -8 6304 6250 182 204 0 61 chr15 55984002 55984051 -45396470 + L2 LINE L2 3223 3268 -4 271 293 60 15 chr15 55984596 55984729 -45395792 + MIR3 SINE MIR 51 189 -19 1117 210 81 35 chr15 55985085 55985395 -45395126 + MER5C DNA MER1_type 1 324 0 255 329 0 0 chr15 55985404 55985477 -45395044 - MIR3 SINE MIR -48 160 88 832 220 0 0 chr15 55985819 55985969 -45394552 - AluSg/x SINE Alu -30 282 133 1276 158 95 55 chr15 55985970 55986097 -45394424 - AluJo SINE Alu -28 284 164 183 114 0 0 chr15 55986097 55986132 -45394389 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1990 130 0 0 chr15 55986132 55986416 -45394105 - AluSx SINE Alu -28 284 1 1276 158 95 55 chr15 55986416 55986560 -45393961 - AluJo SINE Alu -147 165 1 1584 178 17 10 chr15 55986872 55987170 -45393351 + AluJo SINE Alu 1 300 -12 791 211 270 12 chr15 55987335 55987819 -45392702 + Tigger7 DNA MER2_type 8 2487 0 296 233 60 60 chr15 55989292 55989425 -45391096 + LTR33 LTR ERVL 44 176 -345 1959 97 36 4 chr15 55989788 55990067 -45390454 - AluSp SINE Alu -25 288 1 417 39 0 0 chr15 55990264 55990315 -45390206 + (TG)n Simple_repeat Simple_repeat 1 51 0 1731 144 0 63 chr15 55990318 55990651 -45389870 - AluJb SINE Alu 0 312 1 206 229 42 0 chr15 55991924 55991972 -45388549 - MIR SINE MIR -114 148 99 800 217 13 44 chr15 55991972 55992198 -45388323 - AluJo SINE Alu -15 297 79 2137 112 3 6 chr15 55992293 55992605 -45387916 + AluSx SINE Alu 1 311 -1 1364 227 7 28 chr15 55994780 55995071 -45385450 + MLT1A1 LTR MaLR 39 323 -42 363 258 75 0 chr15 55996553 55996673 -45383848 - L1ME4a LINE L1 -2 6119 5991 2144 111 0 7 chr15 55997603 55997909 -45382612 - AluSx SINE Alu -8 304 1 1806 147 7 0 chr15 55998195 55998488 -45382033 + AluJb SINE Alu 1 295 -17 1588 165 0 4 chr15 55998592 55998852 -45381669 - AluJo SINE Alu -53 259 1 311 168 40 48 chr15 55998866 55998991 -45381530 - L1MC5 LINE L1 -225 7736 7613 1840 125 7 4 chr15 55999808 56000120 -45380401 + AluSx SINE Alu 1 313 0 2285 80 0 0 chr15 56002002 56002291 -45378230 + AluSx SINE Alu 1 289 -23 232 206 44 15 chr15 56002460 56002528 -45377993 + MER116 DNA Mariner 1 70 -10 658 237 109 63 chr15 56003118 56003578 -45376943 + L1ME4a LINE L1 5613 6093 -28 269 339 51 17 chr15 56004934 56005052 -45375469 - MIR SINE MIR -20 242 121 180 0 0 0 chr15 56005980 56006000 -45374521 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2121 68 4 7 chr15 56006004 56006284 -45374237 - AluY SINE Alu -30 281 3 1688 169 16 13 chr15 56006376 56006683 -45373838 - AluJo SINE Alu -4 308 1 369 354 61 6 chr15 56007276 56007440 -45373081 + MER5B DNA MER1_type 1 173 -5 415 179 217 9 chr15 56008388 56008494 -45372027 + FLAM_C SINE Alu 10 137 -6 214 216 34 23 chr15 56008498 56008554 -45371967 + A-rich Low_complexity Low_complexity 3 62 -29 1782 138 3 46 chr15 56008554 56008880 -45371641 + AluSx SINE Alu 1 312 0 214 216 34 23 chr15 56008880 56008911 -45371610 + A-rich Low_complexity Low_complexity 62 91 0 864 185 0 0 chr15 56008911 56009062 -45371459 + FRAM SINE Alu 1 146 -30 252 0 0 0 chr15 56009065 56009093 -45371428 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1873 218 69 30 chr15 56009364 56009855 -45370666 + L1MC4 LINE L1 6780 7289 -753 593 251 97 11 chr15 56010414 56010589 -45369932 - MIR SINE MIR -14 248 59 208 297 89 20 chr15 56011454 56011555 -45368966 - MIR SINE MIR -50 212 105 303 309 37 68 chr15 56011681 56011877 -45368644 + MIR SINE MIR 16 206 -56 227 266 9 83 chr15 56012427 56012536 -45367985 + L2 LINE L2 2439 2539 -775 22 35 0 0 chr15 56012543 56012572 -45367949 + AT_rich Low_complexity Low_complexity 1 29 0 2175 93 47 17 chr15 56013161 56013461 -45367060 - AluSx SINE Alu -3 309 1 1341 182 0 0 chr15 56014051 56014271 -45366250 + AluJb SINE Alu 81 300 -12 229 307 13 13 chr15 56014451 56014526 -45365995 + MIR SINE MIR 20 94 -168 532 329 87 24 chr15 56016629 56017088 -45363433 + L2 LINE L2 2810 3297 -16 407 290 108 6 chr15 56017103 56017279 -45363242 - MIR SINE MIR -19 243 50 206 286 52 0 chr15 56018503 56018580 -45361941 + L2 LINE L2 2900 2980 -292 2200 120 0 3 chr15 56019807 56020115 -45360406 - AluSq SINE Alu -6 307 1 2308 109 28 0 chr15 56020435 56020756 -45359765 - MER1B DNA MER1_type -9 330 1 630 184 0 71 chr15 56020958 56021099 -45359422 - FLAM_C SINE Alu 0 133 3 6547 116 11 47 chr15 56021121 56021618 -45358903 - L1MA2 LINE L1 -11 6293 5780 2064 134 7 0 chr15 56021618 56021908 -45358613 - AluSx SINE Alu -20 292 1 6547 116 11 47 chr15 56021908 56021963 -45358558 - L1MA2 LINE L1 -524 5780 5725 1912 167 0 13 chr15 56021963 56022262 -45358259 - AluSx SINE Alu -17 295 1 6547 116 11 47 chr15 56022262 56022877 -45357644 - L1MA2 LINE L1 -579 5725 5162 2239 110 3 0 chr15 56022877 56023168 -45357353 - AluSx SINE Alu -20 292 1 817 181 0 0 chr15 56023195 56023333 -45357188 + FLAM_C SINE Alu 1 138 -5 1022 198 10 10 chr15 56023369 56023566 -45356955 + MER20 DNA MER1_type 22 218 -1 1360 192 72 7 chr15 56024090 56024366 -45356155 + AluJo SINE Alu 6 299 -13 4237 173 51 15 chr15 56024821 56025696 -45354825 + L1MB8 LINE L1 5272 6178 0 2283 101 0 0 chr15 56026015 56026333 -45354188 + AluSx SINE Alu 1 318 0 1700 185 14 3 chr15 56026672 56026959 -45353562 - AluJb SINE Alu -21 291 2 257 164 0 18 chr15 56026966 56027021 -45353500 + CT-rich Low_complexity Low_complexity 1 54 0 370 167 0 0 chr15 56027022 56027082 -45353439 - Alu SINE Alu -3 298 239 404 167 0 0 chr15 56027095 56027167 -45353354 - Alu SINE Alu -1 311 240 1674 133 4 11 chr15 56027171 56027434 -45353087 - AluSx SINE Alu -7 305 45 210 155 311 19 chr15 56028187 56028290 -45352231 + MIR SINE MIR 8 140 -122 997 83 0 0 chr15 56028774 56028895 -45351626 + AluSg SINE Alu 1 121 -189 375 73 0 0 chr15 56028919 56028974 -45351547 + (GA)n Simple_repeat Simple_repeat 2 56 0 267 241 0 0 chr15 56030425 56030483 -45350038 + (TG)n Simple_repeat Simple_repeat 1 58 0 199 305 195 0 chr15 56030549 56030667 -45349854 - MIR3 SINE MIR -19 189 49 873 204 16 0 chr15 56030687 56030873 -45349648 + MER5A DNA MER1_type 1 189 0 459 188 0 0 chr15 56030924 56031004 -45349517 - FRAM SINE Alu -35 141 62 436 340 128 11 chr15 56031076 56031458 -45349063 + L3 LINE CR1 1094 1520 -57 2040 129 7 3 chr15 56031494 56031788 -45348733 + AluSg SINE Alu 1 295 -15 2408 95 0 0 chr15 56034585 56034891 -45345630 - AluSx SINE Alu -6 306 1 566 296 20 20 chr15 56035086 56035289 -45345232 - MIR SINE MIR -58 204 2 1683 181 3 24 chr15 56035465 56035763 -45344758 - AluJb SINE Alu -20 292 1 336 322 66 0 chr15 56035967 56036088 -45344433 + MIR3 SINE MIR 41 169 -39 2003 128 6 28 chr15 56036131 56036450 -45344071 + AluSx SINE Alu 1 312 0 875 151 91 82 chr15 56036619 56036707 -45343814 - MER46A DNA MER2_type -2497 234 148 1974 111 50 4 chr15 56036707 56036986 -45343535 - AluSx SINE Alu -20 292 1 875 151 91 82 chr15 56036986 56037129 -45343392 - MER46A DNA MER2_type -2583 148 1 27 62 0 0 chr15 56037187 56037235 -45343286 + AT_rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr15 56037282 56037311 -45343210 + AT_rich Low_complexity Low_complexity 1 29 0 762 178 31 0 chr15 56038110 56038239 -45342282 + FLAM_C SINE Alu 1 133 0 371 228 44 132 chr15 56038323 56038573 -45341948 - MIR SINE MIR -22 240 13 22 0 0 0 chr15 56038608 56038630 -45341891 + AT_rich Low_complexity Low_complexity 1 22 0 1591 162 56 7 chr15 56038713 56038997 -45341524 - AluJb SINE Alu -14 298 1 2464 80 3 0 chr15 56039005 56039307 -45341214 - AluSp SINE Alu -10 303 1 1826 166 0 13 chr15 56040347 56040649 -45339872 - AluJb SINE Alu -14 298 1 598 197 0 73 chr15 56040742 56040879 -45339642 - MER20 DNA MER1_type 0 219 93 2311 92 14 0 chr15 56040984 56041277 -45339244 - AluSc SINE Alu -12 297 1 230 331 118 8 chr15 56041316 56041443 -45339078 + L2 LINE L2 3173 3313 0 22 0 0 0 chr15 56041671 56041693 -45338828 + AT_rich Low_complexity Low_complexity 1 22 0 967 182 6 11 chr15 56042754 56042930 -45337591 - FAM SINE Alu 0 175 1 1963 114 0 109 chr15 56046941 56047291 -45333230 - AluJb SINE Alu 0 312 1 2289 108 0 0 chr15 56048043 56048340 -45332181 + AluSg SINE Alu 1 297 -13 915 265 36 23 chr15 56048411 56048717 -45331804 + L2 LINE L2 2010 2319 -995 519 311 5 24 chr15 56048844 56049050 -45331471 + L2 LINE L2 2684 2885 -429 202 324 7 81 chr15 56049037 56049173 -45331348 - L2 LINE L2 -623 2691 2566 * 954 221 74 135 chr15 56049340 56049530 -45330991 + MLT1C LTR MaLR 1 201 -266 928 160 0 0 chr15 56049530 56049674 -45330847 - U4 snRNA snRNA -1 144 1 954 221 74 135 chr15 56049674 56049971 -45330550 + MLT1C LTR MaLR 201 458 -9 2343 84 0 0 chr15 56050023 56050357 -45330164 - AluSx SINE Alu 0 334 1 1722 164 25 7 chr15 56050361 56050647 -45329874 - AluJo SINE Alu -21 291 1 374 318 117 31 chr15 56052147 56052370 -45328151 - MIR SINE MIR -11 251 10 325 278 24 24 chr15 56052722 56052848 -45327673 + MIR3 SINE MIR 30 155 -53 600 268 23 35 chr15 56053096 56053336 -45327185 + MIR SINE MIR 21 262 0 209 119 24 0 chr15 56053415 56053457 -45327064 + (TA)n Simple_repeat Simple_repeat 1 43 0 261 0 0 0 chr15 56053481 56053510 -45327011 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 195 42 0 0 chr15 56053530 56053554 -45326967 + (TG)n Simple_repeat Simple_repeat 2 25 0 330 26 0 0 chr15 56053572 56053611 -45326910 + (CA)n Simple_repeat Simple_repeat 2 40 0 2265 229 111 0 chr15 56053636 56054133 -45326388 + MLT1F1 LTR MaLR 3 554 -13 2142 130 0 7 chr15 56054406 56054714 -45325807 - AluJb SINE Alu -6 306 1 1033 132 7 0 chr15 56056651 56056862 -45323659 + ALR/Alpha Satellite centromeric 1 212 -17 2212 129 0 0 chr15 56057054 56057363 -45323158 + AluSx SINE Alu 1 309 -3 403 257 82 55 chr15 56057511 56057694 -45322827 + L1MC/D LINE L1 5632 5819 -1989 543 207 9 0 chr15 56057695 56057811 -45322710 + FLAM_C SINE Alu 1 117 -26 279 130 29 14 chr15 56057876 56057945 -45322576 + (TA)n Simple_repeat Simple_repeat 1 70 0 1589 104 5 14 chr15 56057984 56058196 -45322325 - AluSx SINE Alu -102 210 1 2559 71 0 0 chr15 56062523 56062832 -45317689 - AluY SINE Alu -2 309 1 204 135 0 27 chr15 56063225 56063262 -45317259 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 2082 150 0 0 chr15 56063411 56063718 -45316803 + AluJb SINE Alu 1 307 -5 1900 106 53 3 chr15 56065083 56065367 -45315154 + AluSx SINE Alu 1 298 -14 40 49 0 0 chr15 56065373 56065434 -45315087 + AT_rich Low_complexity Low_complexity 1 61 0 510 234 90 24 chr15 56066109 56066276 -45314245 + MER5B DNA MER1_type 1 178 0 22 70 0 0 chr15 56066799 56066842 -45313679 + AT_rich Low_complexity Low_complexity 1 43 0 226 169 143 26 chr15 56067003 56067080 -45313441 - L1P1 LINE L1 -678 5477 5392 324 111 0 0 chr15 56067098 56067152 -45313369 + (TG)n Simple_repeat Simple_repeat 2 55 0 530 219 185 0 chr15 56069164 56069315 -45311206 - MER5A DNA MER1_type -2 187 9 207 100 0 0 chr15 56070132 56070162 -45310359 + (TCCA)n Simple_repeat Simple_repeat 4 33 0 2568 63 0 0 chr15 56070266 56070568 -45309953 + AluSc SINE Alu 1 302 -7 968 166 70 9 chr15 56070731 56070960 -45309561 + Charlie5 DNA MER1_type 2382 2624 0 657 66 0 0 chr15 56071095 56071186 -45309335 + (TGGA)n Simple_repeat Simple_repeat 3 93 0 1904 157 0 10 chr15 56071420 56071725 -45308796 + AluJb SINE Alu 1 302 -10 1988 284 45 22 chr15 56072166 56072944 -45307577 - L1MC4a LINE L1 -1756 6052 5257 2241 64 0 14 chr15 56072967 56073248 -45307273 + AluSx SINE Alu 26 302 -10 495 33 0 0 chr15 56073253 56073314 -45307207 + (CA)n Simple_repeat Simple_repeat 2 62 0 213 65 0 0 chr15 56073630 56073661 -45306860 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 268 262 93 33 chr15 56073803 56073986 -45306535 + L1ME4a LINE L1 5734 5927 -194 2143 125 3 0 chr15 56075463 56075751 -45304770 - AluSx SINE Alu -23 289 1 2222 101 7 0 chr15 56075805 56076091 -45304430 + AluSq SINE Alu 2 289 -24 28 17 0 69 chr15 56076346 56076404 -45304117 + AT_rich Low_complexity Low_complexity 1 54 0 992 171 12 0 chr15 56176639 56176803 -45203718 + FRAM SINE Alu 1 166 0 1616 152 4 11 chr15 56177385 56177661 -45202860 + AluJo SINE Alu 1 274 -38 1787 147 35 3 chr15 56178321 56178607 -45201914 + AluJb SINE Alu 1 295 -17 2110 119 0 0 chr15 56179179 56179473 -45201048 + AluSx SINE Alu 1 294 -18 1127 138 62 97 chr15 56180046 56180174 -45200347 + AluJo SINE Alu 11 142 -170 1997 129 6 26 chr15 56180174 56180485 -45200036 - AluSx SINE Alu -7 305 1 1127 138 62 97 chr15 56180485 56180646 -45199875 + AluJo SINE Alu 142 290 -22 1931 107 13 10 chr15 56181071 56181370 -45199151 + AluSg SINE Alu 1 300 -10 26 0 0 0 chr15 56181436 56181462 -45199059 + AT_rich Low_complexity Low_complexity 1 26 0 454 245 180 29 chr15 56181916 56182194 -45198327 - L1MC4a LINE L1 -1882 5926 5607 2193 104 0 10 chr15 56182205 56182514 -45198007 - AluSc SINE Alu -3 306 1 307 212 121 30 chr15 56184229 56184328 -45196193 + MIR SINE MIR 121 228 -34 269 197 14 0 chr15 56184328 56184399 -45196122 + GA-rich Low_complexity Low_complexity 1 72 0 2279 81 3 7 chr15 56184729 56185037 -45195484 + AluSc SINE Alu 1 307 -2 1393 212 55 41 chr15 56185320 56185683 -45194838 - MLT1B LTR MaLR 0 390 23 1843 129 0 42 chr15 56186058 56186368 -45194153 + AluSx SINE Alu 1 297 -15 24 0 0 0 chr15 56186368 56186392 -45194129 + AT_rich Low_complexity Low_complexity 1 24 0 447 118 13 53 chr15 56187226 56187302 -45193219 + Charlie3 DNA MER1_type 2634 2706 -4 1834 207 56 11 chr15 56187755 56188199 -45192322 - MLT1C LTR MaLR -3 464 1 261 353 52 7 chr15 56189154 56189290 -45191231 + MIR SINE MIR 102 243 -19 1087 149 0 6 chr15 56189338 56189513 -45191008 - FRAM SINE Alu -6 170 1 33 0 0 0 chr15 56189575 56189608 -45190913 + AT_rich Low_complexity Low_complexity 1 33 0 1996 121 3 13 chr15 56189625 56189786 -45190735 - AluSq SINE Alu -18 295 137 2221 97 0 0 chr15 56189786 56190086 -45190435 - AluSx SINE Alu -12 300 1 1996 121 3 13 chr15 56190086 56190222 -45190299 - AluSq SINE Alu -176 137 1 261 0 0 0 chr15 56190224 56190253 -45190268 + (T)n Simple_repeat Simple_repeat 1 29 0 341 281 23 39 chr15 56190844 56190972 -45189549 - MIR SINE MIR -20 242 117 395 257 28 18 chr15 56191381 56191490 -45189031 + MER94 DNA DNA 1 110 -24 274 325 49 8 chr15 56191570 56191693 -45188828 + MIR SINE MIR 65 192 -70 584 196 5 111 chr15 56192327 56192399 -45188122 + MER104 DNA Tc2 3 81 -1817 2073 109 10 0 chr15 56192399 56192693 -45187828 + AluSq SINE Alu 3 299 -14 584 196 5 111 chr15 56192693 56192809 -45187712 + MER104 DNA Tc2 81 171 -9 21 0 0 0 chr15 56192881 56192902 -45187619 + AT_rich Low_complexity Low_complexity 1 21 0 1977 128 0 0 chr15 56193320 56193609 -45186912 - AluSx SINE Alu -2 310 22 396 189 0 133 chr15 56193796 56193821 -45186700 + L1MB5 LINE L1 6051 6078 -96 2210 107 3 0 chr15 56193821 56194131 -45186390 + AluY SINE Alu 1 311 0 396 189 0 133 chr15 56194131 56194183 -45186338 + L1MB5 LINE L1 6078 6103 -71 1737 172 0 3 chr15 56194183 56194491 -45186030 - AluJo SINE Alu -5 307 1 396 189 0 133 chr15 56194491 56194555 -45185966 + L1MB5 LINE L1 6103 6174 0 488 16 16 0 chr15 56194665 56194726 -45185795 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 726 87 0 0 chr15 56194786 56194889 -45185632 + (TAGA)n Simple_repeat Simple_repeat 1 103 0 451 245 199 7 chr15 56195368 56195519 -45185002 + MER5A DNA MER1_type 10 189 0 2631 16 7 3 chr15 56195577 56195887 -45184634 + AluY SINE Alu 1 311 0 754 228 71 47 chr15 56196517 56196940 -45183581 - LTR48B LTR ERV1 0 644 123 471 240 0 0 chr15 56196927 56197023 -45183498 - MER34 LTR ERV1 -446 96 1 * 2296 75 0 3 chr15 56197050 56197344 -45183177 - AluYa5 SINE Alu -18 293 1 2197 104 0 3 chr15 56197346 56197645 -45182876 - AluSg SINE Alu -11 299 2 1189 220 124 23 chr15 56197652 56198004 -45182517 + MLT1D LTR MaLR 123 505 0 489 248 33 0 chr15 56198111 56198232 -45182289 - LTR67 LTR ERVL -52 505 381 229 254 30 0 chr15 56198264 56198331 -45182190 - L1MC4 LINE L1 -2 8040 7972 749 347 37 13 chr15 56198334 56198717 -45181804 - LTR16C LTR ERVL -3 488 97 804 255 51 0 chr15 56198984 56199200 -45181321 + Charlie2 DNA MER1_type 2623 2849 -13 273 29 0 0 chr15 56199611 56199645 -45180876 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2044 117 0 37 chr15 56199653 56199977 -45180544 + AluSx SINE Alu 1 312 0 1657 125 42 0 chr15 56200154 56200394 -45180127 - MER1B DNA MER1_type -89 250 1 1665 159 67 85 chr15 56200557 56200959 -45179562 + MSTD LTR MaLR 2 396 0 183 297 109 0 chr15 56201227 56201355 -45179166 - L2 LINE L2 -217 3055 2914 755 140 52 15 chr15 56201398 56201534 -45178987 - FRAM SINE Alu -17 159 19 410 181 0 0 chr15 56201556 56201628 -45178893 + MER5A DNA MER1_type 4 75 -114 1288 121 103 9 chr15 56201629 56201746 -45178775 + AluY SINE Alu 1 106 -205 228 35 0 0 chr15 56201746 56201775 -45178746 + (TAA)n Simple_repeat Simple_repeat 1 29 0 1288 121 103 9 chr15 56201775 56201889 -45178632 + AluY SINE Alu 106 254 -57 646 144 0 64 chr15 56201890 56202015 -45178506 + MER5A DNA MER1_type 73 189 0 2160 65 0 7 chr15 56202469 56202746 -45177775 - L1PA5 LINE L1 -64 6090 5816 519 296 59 12 chr15 56203323 56203492 -45177029 + MIR SINE MIR 7 183 -79 2005 110 6 25 chr15 56204227 56204545 -45175976 + AluSx SINE Alu 1 312 0 350 25 0 0 chr15 56205333 56205373 -45175148 + (T)n Simple_repeat Simple_repeat 1 40 0 294 245 189 0 chr15 56207028 56207134 -45173387 - MLT1J LTR MaLR -73 438 313 462 250 25 17 chr15 56207224 56207344 -45173177 - MLT1J LTR MaLR -358 153 33 1923 153 0 3 chr15 56207553 56207861 -45172660 + AluSx SINE Alu 1 307 -5 738 277 13 43 chr15 56207921 56208156 -45172365 + MER90 LTR ERV1 1 228 -386 220 264 94 66 chr15 56208686 56208765 -45171756 + MIR SINE MIR 60 144 -118 2117 128 0 0 chr15 56208765 56209078 -45171443 + AluSq SINE Alu 1 313 0 220 264 94 66 chr15 56209078 56209104 -45171417 + MIR SINE MIR 144 168 -94 1760 91 4 4 chr15 56209608 56209850 -45170671 - AluSq SINE Alu -71 242 1 364 270 103 38 chr15 56210032 56210172 -45170349 + MIR3 SINE MIR 33 181 -27 318 281 62 16 chr15 56210215 56210462 -45170059 - MARNA DNA Mariner -16 570 261 2114 104 3 3 chr15 56210512 56210810 -45169711 - AluSq SINE Alu -15 298 1 658 235 78 0 chr15 56210821 56211000 -45169521 - AluJo SINE Alu 0 312 120 225 0 0 0 chr15 56211529 56211554 -45168967 + (A)n Simple_repeat Simple_repeat 1 25 0 326 210 108 68 chr15 56212351 56212370 -45168151 + Charlie8 DNA MER1_type 89 106 -235 2246 93 3 0 chr15 56212370 56212672 -45167849 + AluSq SINE Alu 1 303 -10 326 210 108 68 chr15 56212672 56212802 -45167719 + Charlie8 DNA MER1_type 106 234 -107 880 79 40 8 chr15 56212866 56212992 -45167529 + AluSg SINE Alu 1 130 -180 1946 109 0 7 chr15 56212996 56213289 -45167232 + AluSg SINE Alu 1 291 -19 189 74 0 0 chr15 56214415 56214442 -45166079 + (CA)n Simple_repeat Simple_repeat 2 28 0 195 42 0 0 chr15 56214489 56214513 -45166008 + (TTC)n Simple_repeat Simple_repeat 2 25 0 873 103 0 24 chr15 56214517 56214643 -45165878 - FLAM_C SINE Alu -20 123 1 1323 111 13 60 chr15 56215047 56215282 -45165239 - AluJo SINE Alu -15 297 74 2295 70 0 3 chr15 56215291 56215590 -45164931 - AluY SINE Alu -13 298 1 466 164 0 0 chr15 56215593 56215666 -45164855 - AluJo SINE Alu -219 93 21 2424 44 3 3 chr15 56215791 56216089 -45164432 - AluY SINE Alu -13 298 1 22 70 0 0 chr15 56216200 56216243 -45164278 + AT_rich Low_complexity Low_complexity 1 43 0 1000 311 38 5 chr15 56216464 56216837 -45163684 + Tigger8 DNA MER2_type 14 398 -268 273 295 53 84 chr15 56216837 56217027 -45163494 - MIR SINE MIR 0 262 79 450 367 32 8 chr15 56217027 56217275 -45163246 + Tigger8 DNA MER2_type 404 657 -9 224 288 182 0 chr15 56217317 56217383 -45163138 + L2 LINE L2 3196 3273 -40 1663 137 88 11 chr15 56217516 56217800 -45162721 + AluJo SINE Alu 3 308 -4 2100 151 0 0 chr15 56218624 56218935 -45161586 + AluSx SINE Alu 1 311 -1 2170 126 0 0 chr15 56218944 56219237 -45161284 + AluSx SINE Alu 1 293 -19 738 243 14 0 chr15 56219336 56219534 -45160987 + FRAM SINE Alu 1 197 0 1599 169 39 26 chr15 56219845 56220153 -45160368 + AluJb SINE Alu 1 312 0 2109 113 0 3 chr15 56220667 56220975 -45159546 - AluSx SINE Alu 0 307 1 241 291 133 18 chr15 56221317 56221482 -45159039 + MIR SINE MIR 78 261 -1 2150 131 0 0 chr15 56221582 56221880 -45158641 - AluSx SINE Alu -14 298 1 2146 112 0 16 chr15 56221883 56222196 -45158325 - AluSq SINE Alu 0 313 6 1773 173 14 0 chr15 56222448 56222743 -45157778 - AluJo SINE Alu -13 299 1 799 305 117 5 chr15 56222745 56223240 -45157281 + L2 LINE L2 2669 3225 -88 2043 136 0 0 chr15 56223345 56223639 -45156882 + AluSx SINE Alu 1 294 -18 364 343 29 0 chr15 56224268 56224408 -45156113 - MIR SINE MIR -66 196 53 1057 240 50 0 chr15 56224483 56224741 -45155780 - L1ME1 LINE L1 -5 6161 5891 23 78 0 0 chr15 56224872 56224923 -45155598 + AT_rich Low_complexity Low_complexity 1 51 0 2521 77 0 3 chr15 56225269 56225581 -45154940 - AluY SINE Alu 0 311 1 945 142 8 0 chr15 56226399 56226533 -45153988 + AluSq/x SINE Alu 1 135 -178 2112 123 0 10 chr15 56226533 56226842 -45153679 + AluSg SINE Alu 1 306 -4 711 109 27 9 chr15 56226891 56227001 -45153520 + HY1 scRNA scRNA 1 112 0 35 0 0 0 chr15 56227001 56227036 -45153485 + AT_rich Low_complexity Low_complexity 1 35 0 215 274 177 18 chr15 56227693 56227806 -45152715 - MIR SINE MIR 0 262 132 1937 136 20 0 chr15 56228006 56228308 -45152213 + AluSq SINE Alu 1 308 -5 294 165 32 17 chr15 56228331 56228404 -45152117 - MIR SINE MIR -78 130 49 1862 134 6 54 chr15 56228722 56229036 -45151485 - AluSx SINE Alu -13 299 1 615 144 0 0 chr15 56229621 56229711 -45150810 + AluJ/FLAM SINE Alu 2 91 -221 2109 100 3 10 chr15 56230253 56230543 -45149978 + AluSx SINE Alu 1 288 -24 248 297 178 0 chr15 56230654 56230767 -45149754 - MIR SINE MIR -65 143 21 2464 72 0 7 chr15 56231054 56231358 -45149163 + AluY SINE Alu 1 302 -9 36 0 0 21 chr15 56232174 56232194 -45148327 + AT_rich Low_complexity Low_complexity 1 20 -26 2276 112 0 0 chr15 56232194 56232490 -45148031 + AluSx SINE Alu 1 296 -16 36 0 0 21 chr15 56232490 56232516 -45148005 + AT_rich Low_complexity Low_complexity 20 46 0 582 228 130 91 chr15 56232993 56233401 -45147120 - MLT1H LTR MaLR -7 542 119 392 218 89 8 chr15 56234230 56234354 -45146167 - L1MC5 LINE L1 -105 7856 7723 875 154 0 0 chr15 56234702 56234832 -45145689 - FLAM_C SINE Alu -3 130 1 1363 192 59 39 chr15 56234834 56235003 -45145518 - AluJo SINE Alu -20 292 113 394 88 29 0 chr15 56235003 56235071 -45145450 + (TA)n Simple_repeat Simple_repeat 2 71 0 1363 192 59 39 chr15 56235071 56235187 -45145334 - AluJo SINE Alu -199 113 1 281 274 0 78 chr15 56235370 56235472 -45145049 - MIR SINE MIR -85 123 30 208 191 0 64 chr15 56236421 56236468 -45144053 + L2 LINE L2 3136 3179 -93 1600 189 48 3 chr15 56236592 56236905 -45143616 - L1MB7 LINE L1 -21 6163 5837 2052 132 7 10 chr15 56237027 56237337 -45143184 - AluSx SINE Alu -3 309 1 269 167 0 17 chr15 56237714 56237774 -45142747 + A-rich Low_complexity Low_complexity 2 60 0 23 33 0 0 chr15 56239070 56239100 -45141421 + GC_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr15 56242054 56242081 -45138440 + AT_rich Low_complexity Low_complexity 1 27 0 404 260 40 110 chr15 56243310 56243510 -45137011 - MIR SINE MIR -27 235 50 584 134 168 17 chr15 56243872 56243991 -45136530 + FLAM_C SINE Alu 2 138 -5 1691 133 4 65 chr15 56245183 56245462 -45135059 + AluSx SINE Alu 33 294 -18 416 174 0 0 chr15 56245586 56245655 -45134866 - AluJ/FLAM SINE Alu -242 70 2 848 127 40 0 chr15 56245655 56245805 -45134716 - L1MA7 LINE L1 -47 6244 6089 844 254 42 5 chr15 56245823 56246036 -45134485 + MER58A DNA MER1_type 4 224 0 2123 94 24 17 chr15 56246061 56246349 -45134172 - AluSc SINE Alu -18 291 2 417 245 91 7 chr15 56246545 56246688 -45133833 + MIR SINE MIR 34 188 -74 189 0 0 0 chr15 56247184 56247205 -45133316 + (A)n Simple_repeat Simple_repeat 1 21 0 196 250 145 0 chr15 56248440 56248516 -45132005 + MIR SINE MIR 33 120 -88 2511 79 0 3 chr15 56248601 56248906 -45131615 + AluSc SINE Alu 1 304 -5 2416 83 3 13 chr15 56248965 56249279 -45131242 + AluY SINE Alu 1 311 0 1286 184 38 52 chr15 56249941 56250229 -45130292 - AluJb SINE Alu -6 306 23 2336 85 16 0 chr15 56250989 56251294 -45129227 + AluSg SINE Alu 1 310 0 1250 107 112 13 chr15 56251334 56251567 -45128954 - L1MA2 LINE L1 0 6304 6049 610 141 33 0 chr15 56251572 56251664 -45128857 - U6 snRNA snRNA -11 96 2 4985 129 32 36 chr15 56251666 56252758 -45127763 - L1MA3 LINE L1 -224 7500 6401 15388 110 35 7 chr15 56252758 56255064 -45125457 - L1MA3 LINE L1 -3896 3669 1299 667 193 0 22 chr15 56255632 56255767 -45124754 - AluJo SINE Alu -91 221 90 253 269 102 85 chr15 56256817 56256892 -45123629 + L1M4 LINE L1 4367 4439 -1707 1815 150 44 10 chr15 56256892 56257186 -45123335 + AluJb SINE Alu 1 304 -8 253 269 102 85 chr15 56257186 56257321 -45123200 + L1M4 LINE L1 4439 4570 -1576 1947 165 9 15 chr15 56257321 56257660 -45122861 + MER1B DNA MER1_type 1 337 0 253 269 102 85 chr15 56257660 56258121 -45122400 + L1M4 LINE L1 4570 5051 -1095 273 342 98 22 chr15 56259482 56260023 -45120498 - L2 LINE L2 -426 2888 2307 993 288 52 76 chr15 56260673 56260942 -45119579 + MLT1J LTR MaLR 1 275 -236 2258 123 0 3 chr15 56260942 56261252 -45119269 - AluSg SINE Alu -1 309 1 993 288 52 76 chr15 56261252 56261352 -45119169 + MLT1J LTR MaLR 275 376 -135 2155 145 3 0 chr15 56261352 56261663 -45118858 - AluSx SINE Alu 0 312 1 993 288 52 76 chr15 56261663 56261816 -45118705 + MLT1J LTR MaLR 376 511 0 715 119 0 18 chr15 56262781 56262890 -45117631 - AluSq/x SINE Alu -205 108 2 252 314 39 20 chr15 56262974 56263076 -45117445 + L2 LINE L2 3203 3306 -7 804 162 7 27 chr15 56263202 56263433 -45117088 + AluJb SINE Alu 167 394 0 369 224 0 0 chr15 56263979 56264046 -45116475 + AluJ/FLAM SINE Alu 1 67 -235 1159 176 19 9 chr15 56264433 56264643 -45115878 + AluJo SINE Alu 1 212 -100 1343 86 0 11 chr15 56264750 56264925 -45115596 + AluSq SINE Alu 140 312 -1 1220 189 121 18 chr15 56264947 56265227 -45115294 + AluJb SINE Alu 1 309 -3 1966 148 0 10 chr15 56265799 56266097 -45114424 + AluJb SINE Alu 2 296 -16 21 0 0 0 chr15 56266565 56266586 -45113935 + AT_rich Low_complexity Low_complexity 1 21 0 2327 112 3 3 chr15 56268029 56268342 -45112179 - AluSp SINE Alu 0 313 1 1327 130 0 29 chr15 56268430 56268637 -45111884 - AluJo SINE Alu 0 312 112 384 293 83 8 chr15 56269153 56269286 -45111235 - MIR SINE MIR -93 169 27 383 205 238 8 chr15 56269335 56269457 -45111064 + MER5A DNA MER1_type 19 168 -21 223 352 94 28 chr15 56270114 56270327 -45110194 + L2 LINE L2 2565 2791 -523 368 250 106 0 chr15 56270389 56270493 -45110028 + L2 LINE L2 3199 3313 0 2478 62 0 10 chr15 56270618 56270924 -45109597 + AluY SINE Alu 1 303 -8 2326 98 3 0 chr15 56272886 56273181 -45107340 + AluSx SINE Alu 1 296 -16 1986 146 0 13 chr15 56273699 56274014 -45106507 - AluJo SINE Alu -1 311 1 977 257 54 96 chr15 56274071 56274383 -45106138 + L1MC4a LINE L1 5491 5815 -1993 2057 131 10 0 chr15 56274383 56274674 -45105847 + AluSx SINE Alu 1 294 -18 977 257 54 96 chr15 56274674 56274778 -45105743 + L1MC4a LINE L1 5815 5881 -1927 2261 107 3 0 chr15 56274778 56275076 -45105445 + AluSq SINE Alu 1 299 -14 977 257 54 96 chr15 56275076 56275199 -45105322 + L1MC4a LINE L1 5881 6008 -1800 331 209 0 51 chr15 56275448 56275526 -45104995 + AluS SINE Alu 1 61 -241 1004 135 6 35 chr15 56275526 56275696 -45104825 + AluJo/FRAM SINE Alu 137 301 -1 3333 140 29 24 chr15 56275718 56276269 -45104252 - MER41C LTR ERV1 0 554 1 1628 99 132 12 chr15 56276308 56276551 -45103970 + AluSg SINE Alu 1 272 -38 738 164 8 16 chr15 56276922 56277050 -45103471 - FLAM_A SINE Alu -6 127 1 2086 137 0 3 chr15 56277060 56277359 -45103162 - AluJo SINE Alu -14 298 1 330 87 0 0 chr15 56277776 56277822 -45102699 + (CA)n Simple_repeat Simple_repeat 2 47 0 2164 121 3 13 chr15 56277964 56278277 -45102244 + AluSx SINE Alu 3 312 0 789 138 0 0 chr15 56278290 56278406 -45102115 - FLAM_C SINE Alu -17 116 1 523 118 18 73 chr15 56279060 56279170 -45101351 + U13 snRNA snRNA 1 104 0 2220 124 0 7 chr15 56279219 56279526 -45100995 - AluSx SINE Alu -7 305 1 1731 267 40 25 chr15 56279858 56280333 -45100188 - MER115 DNA AcHobo -31 662 181 2016 95 0 8 chr15 56280804 56281066 -45099455 + AluSq SINE Alu 1 260 -53 189 74 0 0 chr15 56281083 56281110 -45099411 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 303 28 0 0 chr15 56281588 56281624 -45098897 + (CA)n Simple_repeat Simple_repeat 1 36 0 2360 89 10 0 chr15 56282252 56282556 -45097965 - AluSg SINE Alu -3 307 1 536 306 25 10 chr15 56283035 56283234 -45097287 - MIR SINE MIR -3 259 58 180 200 0 0 chr15 56283234 56283274 -45097247 + (ATGGTG)n Simple_repeat Simple_repeat 4 43 0 451 287 0 0 chr15 56283284 56283413 -45097108 - MIR SINE MIR -11 251 123 753 187 0 0 chr15 56283953 56284087 -45096434 - AluSg/x SINE Alu -2 310 177 186 205 84 60 chr15 56284723 56284806 -45095715 + MIR SINE MIR 49 133 -129 1089 218 14 0 chr15 56285185 56285401 -45095120 + MER20 DNA MER1_type 1 219 0 787 216 74 61 chr15 56285435 56285666 -45094855 - Charlie8 DNA MER1_type -2183 234 1 1274 60 18 0 chr15 56285965 56286131 -45094390 + L1PA10 LINE L1 6000 6168 0 526 221 63 0 chr15 56286137 56286288 -45094233 + MIR SINE MIR 55 214 -48 21 0 0 0 chr15 56286364 56286385 -45094136 + AT_rich Low_complexity Low_complexity 1 21 0 434 312 39 13 chr15 56287695 56287849 -45092672 - L2 LINE L2 0 3272 3115 585 223 50 59 chr15 56288385 56288587 -45091934 - MIR SINE MIR -35 227 28 834 216 88 5 chr15 56289258 56289462 -45091059 - MIR SINE MIR -7 255 35 2190 133 0 0 chr15 56289598 56289900 -45090621 + AluSx SINE Alu 1 302 -10 26 0 0 0 chr15 56289966 56289992 -45090529 + AT_rich Low_complexity Low_complexity 1 26 0 5194 171 12 25 chr15 56290044 56290191 -45090330 + L1PA16 LINE L1 4124 4271 -1895 2048 146 7 0 chr15 56290191 56290500 -45090021 + AluSp SINE Alu 1 311 -2 5194 171 12 25 chr15 56290500 56292294 -45088227 + L1PA16 LINE L1 4271 6036 -130 795 152 213 0 chr15 56292294 56292458 -45088063 + AluJb SINE Alu 107 305 -7 1966 142 3 16 chr15 56292460 56292776 -45087745 + AluSx SINE Alu 1 312 0 849 67 75 0 chr15 56292776 56292896 -45087625 + L1PA16 LINE L1 6023 6151 -15 417 229 28 0 chr15 56293335 56293444 -45087077 + MER104 DNA Tc2 29 140 -40 2402 77 0 26 chr15 56293449 56293760 -45086761 + AluY SINE Alu 1 303 -8 2209 106 3 13 chr15 56293941 56294244 -45086277 + AluY SINE Alu 1 300 -11 2233 110 0 7 chr15 56295595 56295904 -45084617 - AluSc SINE Alu -2 307 1 2090 103 3 21 chr15 56296807 56297098 -45083423 + AluSc SINE Alu 1 286 -23 1518 180 64 24 chr15 56297891 56298186 -45082335 - AluJo SINE Alu -5 307 1 348 284 36 62 chr15 56298210 56298435 -45082086 - L2 LINE L2 -635 2679 2461 339 227 146 9 chr15 56299448 56299558 -45080963 - MIR SINE MIR -90 172 48 329 212 253 10 chr15 56299703 56299802 -45080719 - L2 LINE L2 -5 3308 3186 349 241 90 15 chr15 56299817 56299950 -45080571 - MIR SINE MIR -60 202 60 1014 154 130 67 chr15 56301276 56301332 -45079189 + MER58A DNA MER1_type 1 52 -2368 1658 201 0 3 chr15 56301332 56301641 -45078880 - AluJo SINE Alu -4 308 1 1014 154 130 67 chr15 56301641 56301792 -45078729 + MER58A DNA MER1_type 52 221 -3 327 198 19 85 chr15 56302697 56302803 -45077718 - MIR SINE MIR -79 183 85 852 102 0 95 chr15 56303287 56303434 -45077087 - FLAM_C SINE Alu 0 133 1 1760 158 7 14 chr15 56303802 56304099 -45076422 - AluJo SINE Alu -3 309 15 1524 194 48 10 chr15 56304588 56304877 -45075644 + AluJo SINE Alu 5 304 -8 1129 82 13 0 chr15 56304877 56305036 -45075485 + L1MA3 LINE L1 6134 6294 -11 1889 159 7 3 chr15 56306660 56306962 -45073559 + AluSq SINE Alu 1 303 -10 3150 68 22 0 chr15 56307174 56307583 -45072938 - L1PA7 LINE L1 0 6154 5737 2317 104 0 3 chr15 56308120 56308419 -45072102 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr15 56308808 56308830 -45071691 + AT_rich Low_complexity Low_complexity 1 22 0 898 170 0 0 chr15 56309350 56309497 -45071024 - AluSg/x SINE Alu 0 310 164 1163 172 5 15 chr15 56309497 56309695 -45070826 - AluJb SINE Alu -32 280 85 2051 136 27 0 chr15 56311750 56312051 -45068470 + AluSx SINE Alu 2 310 -2 291 93 0 0 chr15 56312575 56312618 -45067903 + (TG)n Simple_repeat Simple_repeat 1 43 0 201 147 0 0 chr15 56313453 56313487 -45067034 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 1215 236 149 8 chr15 56314714 56315042 -45065479 + L1MC4 LINE L1 7240 7521 -521 1629 168 4 7 chr15 56315042 56315316 -45065205 + AluJb SINE Alu 16 288 -24 1215 236 149 8 chr15 56315316 56315332 -45065189 + L1MC4 LINE L1 7521 7533 -509 1896 126 23 40 chr15 56315332 56315633 -45064888 + AluSx SINE Alu 1 296 -16 1215 236 149 8 chr15 56315633 56315757 -45064764 + L1MC4 LINE L1 7533 7775 -267 2408 69 0 41 chr15 56315757 56316076 -45064445 + AluY SINE Alu 1 306 -5 234 351 166 7 chr15 56317766 56318062 -45062459 - L2 LINE L2 -5 3267 2925 2041 157 3 0 chr15 56318842 56319148 -45061373 - AluJb SINE Alu -5 307 1 1918 94 0 0 chr15 56319339 56319583 -45060938 - AluSx SINE Alu -6 306 63 382 257 10 0 chr15 56319583 56319684 -45060837 + MIR SINE MIR 147 248 -14 240 184 0 0 chr15 56321173 56321222 -45059299 + T-rich Low_complexity Low_complexity 1 49 0 1098 90 0 0 chr15 56321222 56321355 -45059166 - AluSq/x SINE Alu -180 133 1 29 0 0 0 chr15 56321379 56321408 -45059113 + AT_rich Low_complexity Low_complexity 1 29 0 324 316 36 22 chr15 56322768 56322907 -45057614 + MIR SINE MIR 111 251 -11 459 287 72 11 chr15 56323375 56323556 -45056965 + Charlie7 DNA MER1_type 2 193 -2419 532 233 40 74 chr15 56323702 56323904 -45056617 + MIR3 SINE MIR 7 201 -7 2088 142 0 3 chr15 56324432 56324735 -45055786 + AluJo SINE Alu 1 302 -10 2940 188 83 5 chr15 56324735 56325325 -45055196 - MER6 DNA MER2_type -228 637 2 289 71 143 0 chr15 56327045 56327087 -45053434 + MADE1 DNA Mariner 31 78 -2 28 102 0 0 chr15 56327152 56327250 -45053271 + AT_rich Low_complexity Low_complexity 1 98 0 1791 114 67 37 chr15 56327260 56327558 -45052963 + AluSx SINE Alu 1 307 -5 437 250 67 0 chr15 56327558 56327662 -45052859 - AluJo/FLAM SINE Alu -196 116 6 1829 148 0 75 chr15 56328134 56328465 -45052056 + AluJo SINE Alu 1 306 -6 585 186 290 0 chr15 56329098 56329281 -45051240 + MIR SINE MIR 2 237 -25 310 241 11 35 chr15 56329315 56329402 -45051119 - L2 LINE L2 -1 3271 3187 218 286 71 0 chr15 56329904 56329988 -45050533 + CT-rich Low_complexity Low_complexity 4 93 0 235 231 46 100 chr15 56430108 56430206 -44950315 + L2 LINE L2 3186 3277 -36 4904 113 32 30 chr15 56430206 56430983 -44949538 - MER4E LTR ERV1 0 779 1 235 231 46 100 chr15 56430983 56431014 -44949507 + L2 LINE L2 3277 3308 -5 586 167 83 8 chr15 56431050 56431157 -44949364 - Tigger7 DNA MER2_type 0 2487 2372 1638 187 60 55 chr15 56431157 56431542 -44948979 + MSTB LTR MaLR 1 387 -39 2124 137 3 10 chr15 56433450 56433764 -44946757 - AluSx SINE Alu 0 312 1 2208 103 6 26 chr15 56434167 56434478 -44946043 - AluSx SINE Alu -7 305 1 2126 95 53 3 chr15 56434610 56434895 -44945626 + AluSx SINE Alu 1 299 -13 810 105 9 9 chr15 56434895 56435009 -44945512 - AluSq/x SINE Alu -199 114 1 253 268 57 81 chr15 56435119 56435242 -44945279 - MIR3 SINE MIR -7 201 82 1828 157 4 0 chr15 56436221 56436501 -44944020 + AluSx SINE Alu 1 281 -31 1992 96 50 7 chr15 56436526 56436808 -44943713 - AluSx SINE Alu -18 294 1 327 259 129 24 chr15 56436809 56436979 -44943542 - L1MC5 LINE L1 -50 7911 7724 2304 107 0 0 chr15 56437059 56437357 -44943164 - AluSg SINE Alu -12 298 1 233 340 26 32 chr15 56437446 56437602 -44942919 + MIR3 SINE MIR 51 205 -3 3950 87 31 0 chr15 56438354 56438904 -44941617 - L1PA10 LINE L1 -17 6151 5585 1833 86 4 8 chr15 56439024 56439281 -44941240 + L1PA14 LINE L1 5599 5854 -307 183 42 0 0 chr15 56440322 56440346 -44940175 + (A)n Simple_repeat Simple_repeat 1 24 0 1890 163 0 10 chr15 56440644 56440950 -44939571 + AluJo SINE Alu 2 304 -8 721 144 0 0 chr15 56441056 56441160 -44939361 + AluSq SINE Alu 151 254 -59 210 306 186 16 chr15 56441187 56441380 -44939141 - L2 LINE L2 -456 2858 2633 372 220 132 55 chr15 56441472 56441532 -44938989 - MIR SINE MIR -38 224 170 2150 110 10 0 chr15 56441532 56441831 -44938690 + AluSq SINE Alu 1 302 -11 372 220 132 55 chr15 56441831 56441962 -44938559 - MIR SINE MIR -92 170 20 495 294 118 50 chr15 56441963 56442461 -44938060 - L2 LINE L2 -746 2568 2023 1703 169 17 7 chr15 56442461 56442579 -44937942 + AluJb SINE Alu 1 116 -196 225 0 0 0 chr15 56442579 56442604 -44937917 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1703 169 17 7 chr15 56442604 56442787 -44937734 + AluJb SINE Alu 116 305 -7 495 294 118 50 chr15 56442787 56442872 -44937649 - L2 LINE L2 -1291 2023 1945 454 102 25 195 chr15 56443008 56443126 -44937395 - FLAM_C SINE Alu -25 118 21 334 0 0 0 chr15 56443155 56443195 -44937326 + L1P3 LINE L1 5646 5685 -469 1519 166 19 19 chr15 56443401 56443672 -44936849 - AluJb SINE Alu -41 271 1 377 226 348 12 chr15 56443814 56443978 -44936543 - MIR SINE MIR 0 262 44 233 250 29 0 chr15 56444501 56444569 -44935952 - L1MC/D LINE L1 -1927 5881 5812 926 164 36 11 chr15 56444901 56445125 -44935396 + AluJb SINE Alu 1 300 -12 373 250 69 31 chr15 56445151 56445311 -44935210 - L1MC/D LINE L1 -2283 5525 5360 1227 173 28 85 chr15 56445311 56445594 -44934927 - AluJo SINE Alu -8 304 38 243 329 34 29 chr15 56445787 56445994 -44934527 - L1MC/D LINE L1 -978 5168 4961 1703 144 9 82 chr15 56446052 56446371 -44934150 + AluJb SINE Alu 5 300 -12 2022 134 7 7 chr15 56446371 56446677 -44933844 + AluSg SINE Alu 1 306 -4 606 207 0 14 chr15 56447600 56447740 -44932781 + AluSc SINE Alu 157 294 -15 34 24 0 0 chr15 56448091 56448132 -44932389 + AT_rich Low_complexity Low_complexity 1 41 0 915 160 0 7 chr15 56448549 56448699 -44931822 - FRAM SINE Alu -12 164 16 597 135 0 31 chr15 56448703 56448799 -44931722 + FRAM SINE Alu 73 165 -11 521 122 0 0 chr15 56448866 56448940 -44931581 + AluJ/FLAM SINE Alu 2 75 -237 574 134 0 0 chr15 56448940 56449022 -44931499 - AluJb SINE Alu -95 217 136 861 208 6 12 chr15 56449136 56449304 -44931217 + FRAM SINE Alu 1 167 -9 747 209 0 0 chr15 56449381 56449510 -44931011 - FLAM_A SINE Alu -2 131 3 2115 114 7 0 chr15 56449546 56449835 -44930686 - AluSq SINE Alu -22 291 1 421 259 123 25 chr15 56449922 56450158 -44930363 - L2 LINE L2 -5 3308 3050 907 185 0 23 chr15 56450158 56450331 -44930190 + FRAM SINE Alu 1 169 -7 222 62 0 0 chr15 56450351 56450383 -44930138 + (CA)n Simple_repeat Simple_repeat 2 33 0 428 262 93 63 chr15 56450387 56450444 -44930077 - L2 LINE L2 -253 3060 3006 1706 172 17 14 chr15 56450444 56450740 -44929781 + AluJo SINE Alu 1 297 -15 428 262 93 63 chr15 56450740 56450919 -44929602 - L2 LINE L2 -307 3006 2817 1925 123 3 48 chr15 56451539 56451849 -44928672 + AluSx SINE Alu 1 296 -16 247 205 51 51 chr15 56451881 56451952 -44928569 + MLT1J LTR MaLR 376 446 -65 2149 174 23 23 chr15 56451952 56452348 -44928173 - MER57A LTR ERV1 0 403 8 2882 180 73 44 chr15 56452501 56453166 -44927355 + LTR8A LTR ERV1 9 727 0 872 205 111 156 chr15 56453271 56453432 -44927089 - LTR8A LTR ERV1 -4 723 556 2019 134 79 18 chr15 56453432 56453775 -44926746 - THE1B LTR MaLR 0 364 1 872 205 111 156 chr15 56453775 56454167 -44926354 - LTR8A LTR ERV1 -171 556 211 4039 109 4 0 chr15 56454167 56454719 -44925802 + MER41A LTR ERV1 1 554 0 872 205 111 156 chr15 56454719 56454921 -44925600 - LTR8A LTR ERV1 -516 211 1 230 75 100 25 chr15 56455253 56455290 -44925231 + LTR29 LTR ERV1 1 40 -582 1837 164 22 11 chr15 56455290 56455650 -44924871 + LTR8A LTR ERV1 1 364 -363 1679 145 11 4 chr15 56455855 56456117 -44924404 + LTR29 LTR ERV1 359 622 0 3459 150 44 68 chr15 56456155 56456861 -44923660 + LTR8 LTR ERV1 2 690 -1 2139 128 0 3 chr15 56457005 56457295 -44923226 + AluSx SINE Alu 1 289 -23 22 0 0 0 chr15 56457336 56457358 -44923163 + AT_rich Low_complexity Low_complexity 1 22 0 977 168 174 90 chr15 56457456 56457653 -44922868 + LTR48 LTR ERV1 1 237 -550 1521 207 3 17 chr15 56457653 56457952 -44922569 + AluJo SINE Alu 1 295 -17 977 168 174 90 chr15 56457952 56458076 -44922445 + LTR48 LTR ERV1 237 349 -438 2536 97 39 3 chr15 56458084 56458557 -44921964 + L1PB1 LINE L1 5151 5641 -510 204 40 0 0 chr15 56458558 56458583 -44921938 + (TG)n Simple_repeat Simple_repeat 2 26 0 2003 154 0 0 chr15 56458606 56458899 -44921622 + AluSx SINE Alu 16 308 -4 2357 102 0 0 chr15 56458899 56459223 -44921298 + L1PB1 LINE L1 5828 6151 0 180 0 0 0 chr15 56459226 56459246 -44921275 + (CAATA)n Simple_repeat Simple_repeat 4 23 0 746 234 27 32 chr15 56459336 56459664 -44920857 + LTR48 LTR ERV1 384 787 0 255 299 26 0 chr15 56460349 56460426 -44920095 - L2 LINE L2 -209 3063 2985 2409 81 10 0 chr15 56460880 56461177 -44919344 - AluSg1 SINE Alu -9 300 1 213 121 0 0 chr15 56461210 56461243 -44919278 + (T)n Simple_repeat Simple_repeat 1 33 0 627 141 0 0 chr15 56461484 56461576 -44918945 - FLAM_C SINE Alu -19 124 33 1321 170 65 29 chr15 56461611 56461887 -44918634 - AluSx SINE Alu -26 286 1 215 280 61 38 chr15 56461890 56462022 -44918499 - L2 LINE L2 -15 3298 3164 435 253 108 32 chr15 56462393 56462551 -44917970 - MARNA DNA Mariner -408 178 9 2299 108 10 3 chr15 56462757 56463062 -44917459 + AluSc SINE Alu 1 307 -2 1889 138 10 16 chr15 56463979 56464283 -44916238 + AluSx SINE Alu 5 306 -6 961 94 123 14 chr15 56465009 56465147 -44915374 + AluSp SINE Alu 1 153 -160 1107 115 0 0 chr15 56465275 56465431 -44915090 + AluSg/x SINE Alu 155 310 -2 1777 137 100 0 chr15 56465645 56465915 -44914606 - AluSx SINE Alu -15 297 1 998 192 16 26 chr15 56465920 56466113 -44914408 - MER20 DNA MER1_type -25 194 4 991 211 26 34 chr15 56466252 56466548 -44913973 - LTR37B LTR ERV1 0 468 146 325 172 76 140 chr15 56466633 56466670 -44913851 - LTR37B LTR ERV1 -316 152 114 1102 180 47 9 chr15 56466670 56466881 -44913640 + MER20 DNA MER1_type 1 219 0 325 172 76 140 chr15 56466881 56466906 -44913615 - LTR37B LTR ERV1 -354 114 89 2260 115 3 0 chr15 56466906 56467211 -44913310 + AluSx SINE Alu 1 306 -6 1864 129 14 4 chr15 56467220 56467498 -44913023 + AluSg SINE Alu 21 301 -9 325 172 76 140 chr15 56467498 56467581 -44912940 - LTR37B LTR ERV1 -387 81 6 1335 127 0 227 chr15 56467679 56468066 -44912455 - AluSx SINE Alu -9 303 5 542 114 136 0 chr15 56468741 56468829 -44911692 + LTR48B LTR ERV1 28 127 -517 492 133 22 44 chr15 56468844 56469024 -44911497 + (TA)n Simple_repeat Simple_repeat 1 176 0 225 0 0 0 chr15 56469044 56469069 -44911452 + (TAGA)n Simple_repeat Simple_repeat 3 27 0 4527 191 96 66 chr15 56469233 56469335 -44911186 + LTR49-int LTR ERV1 3864 3962 -2369 1669 194 0 13 chr15 56469335 56469639 -44910882 - AluJo SINE Alu -12 300 1 4527 191 96 66 chr15 56469639 56470729 -44909792 + LTR49-int LTR ERV1 3962 5109 -1222 1901 163 0 3 chr15 56470729 56471018 -44909503 - AluJo SINE Alu -24 288 1 4527 191 96 66 chr15 56471018 56471284 -44909237 + LTR49-int LTR ERV1 5109 5366 -965 2209 116 0 7 chr15 56471284 56471587 -44908934 - AluSx SINE Alu -9 303 3 280 346 19 0 chr15 56471643 56471750 -44908771 + L1P4 LINE L1 5360 5468 -693 22 35 0 0 chr15 56471947 56471976 -44908545 + AT_rich Low_complexity Low_complexity 1 29 0 2190 102 3 3 chr15 56472482 56472776 -44907745 + AluSx SINE Alu 1 294 -18 715 169 46 39 chr15 56473311 56473441 -44907080 - AluJb SINE Alu -180 132 2 2243 68 20 7 chr15 56474698 56474990 -44905531 - AluY SINE Alu -14 297 2 2131 130 0 0 chr15 56474992 56475284 -44905237 - AluSx SINE Alu -20 292 1 618 160 149 29 chr15 56475691 56475866 -44904655 - MER3 DNA MER1_type 0 209 14 677 173 0 0 chr15 56476311 56476415 -44904106 + FLAM_C SINE Alu 7 110 -33 21 0 0 0 chr15 56476415 56476436 -44904085 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr15 56476778 56476800 -44903721 + AT_rich Low_complexity Low_complexity 1 22 0 2167 111 7 0 chr15 56478001 56478299 -44902222 - AluSx SINE Alu -12 300 1 2030 123 4 0 chr15 56478331 56478607 -44901914 - AluSx SINE Alu -30 282 6 822 140 18 0 chr15 56478633 56478747 -44901774 - FLAM_C SINE Alu -25 118 3 2104 133 3 3 chr15 56478821 56479130 -44901391 - AluSx SINE Alu -3 309 1 2120 125 0 3 chr15 56479132 56479428 -44901093 - AluSx SINE Alu -17 295 1 3815 250 87 35 chr15 56479646 56479919 -44900602 - L2 LINE L2 -508 2806 2549 1657 161 0 8 chr15 56479919 56480179 -44900342 - AluJb SINE Alu -54 258 1 3815 250 87 35 chr15 56480179 56481214 -44899307 - L2 LINE L2 -765 2549 1426 1600 193 11 0 chr15 56481214 56481484 -44899037 - AluJo SINE Alu -39 273 1 1667 202 51 102 chr15 56481495 56482025 -44898496 - L1ME3A LINE L1 -4 6166 5664 9693 114 73 105 chr15 56482027 56482631 -44897890 - Tigger1 DNA MER2_type 0 2418 1796 2048 147 0 0 chr15 56482631 56482931 -44897590 - AluSx SINE Alu -12 300 1 9693 114 73 105 chr15 56482931 56483054 -44897467 - Tigger1 DNA MER2_type -622 1796 1671 2078 138 13 0 chr15 56483054 56483358 -44897163 - AluSx SINE Alu -4 308 1 9693 114 73 105 chr15 56483358 56483557 -44896964 - Tigger1 DNA MER2_type -747 1671 1467 1995 129 14 0 chr15 56483557 56483836 -44896685 - AluSx SINE Alu -29 283 1 2144 134 0 0 chr15 56483845 56484143 -44896378 - AluSx SINE Alu -14 298 1 9693 114 73 105 chr15 56484143 56485203 -44895318 - Tigger1 DNA MER2_type -959 1459 484 1787 167 0 29 chr15 56485203 56485514 -44895007 - AluJb SINE Alu -10 302 1 420 124 0 3 chr15 56485515 56485586 -44894935 - L1ME3A LINE L1 -516 5667 5600 333 0 0 0 chr15 56485586 56485623 -44894898 + (CA)n Simple_repeat Simple_repeat 1 37 0 303 196 0 0 chr15 56485623 56485679 -44894842 - L1MC4 LINE L1 -1339 6703 6648 1735 156 7 17 chr15 56485680 56485969 -44894552 - AluJo SINE Alu -24 288 3 901 173 35 15 chr15 56485970 56486167 -44894354 - L1M3 LINE L1 -567 5616 5416 833 263 199 18 chr15 56486142 56486865 -44893656 - L1MEc LINE L1 -4819 1577 724 * 956 296 82 32 chr15 56487036 56487502 -44893019 - L1MEc LINE L1 -5873 523 35 266 174 49 14 chr15 56488052 56488197 -44892324 + CT-rich Low_complexity Low_complexity 1 150 0 435 340 45 32 chr15 56489903 56490150 -44890371 - MIR SINE MIR -1 261 12 1433 176 124 0 chr15 56490274 56490390 -44890131 + AluJo SINE Alu 1 101 -201 432 51 0 0 chr15 56490390 56490449 -44890072 + (TAAA)n Simple_repeat Simple_repeat 3 61 0 1433 176 124 0 chr15 56490449 56490599 -44889922 + AluJo SINE Alu 101 300 -2 1622 118 100 33 chr15 56490605 56490876 -44889645 + AluJo SINE Alu 1 289 -23 4291 92 9 5 chr15 56491166 56491718 -44888803 - MER41A LTR ERV1 0 554 1 968 233 296 25 chr15 56491882 56492453 -44888068 + LTR50 LTR ERVL 18 743 -52 1856 149 0 17 chr15 56492455 56492756 -44887765 + AluJb SINE Alu 1 296 -16 261 146 0 0 chr15 56493998 56494046 -44886475 + (T)n Simple_repeat Simple_repeat 1 48 0 302 241 194 29 chr15 56494215 56494385 -44886136 + MIR SINE MIR 56 253 -9 2115 131 0 0 chr15 56497030 56497320 -44883201 - AluSg SINE Alu -20 290 1 2215 95 17 0 chr15 56498718 56499013 -44881508 + AluSg SINE Alu 1 300 -10 2448 76 0 0 chr15 56502042 56502343 -44878178 - AluY SINE Alu -10 301 1 2201 106 0 0 chr15 56502646 56502930 -44877591 + AluSg SINE Alu 1 284 -26 1939 155 10 0 chr15 56502992 56503289 -44877232 + AluJb SINE Alu 1 300 -12 29 28 0 0 chr15 56503598 56503634 -44876887 + AT_rich Low_complexity Low_complexity 1 36 0 2211 110 0 0 chr15 56504046 56504338 -44876183 + AluSq SINE Alu 1 292 -21 28 0 0 0 chr15 56504352 56504380 -44876141 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr15 56506141 56506164 -44874357 + AT_rich Low_complexity Low_complexity 1 23 0 969 154 0 0 chr15 56506735 56506891 -44873630 + L1MA5 LINE L1 6144 6299 -1 23 0 0 0 chr15 56506891 56506914 -44873607 + AT_rich Low_complexity Low_complexity 1 23 0 1951 162 0 3 chr15 56507810 56508119 -44872402 + AluJb SINE Alu 3 310 -2 30 0 0 0 chr15 56508399 56508429 -44872092 + AT_rich Low_complexity Low_complexity 1 30 0 2473 58 10 10 chr15 56508452 56508760 -44871761 + AluSp SINE Alu 1 308 -5 505 222 157 27 chr15 56509126 56509311 -44871210 + L1MC5 LINE L1 7705 7913 -48 1397 186 0 0 chr15 56509506 56509742 -44870779 + AluJb SINE Alu 55 290 -22 1419 209 12 0 chr15 56509939 56510198 -44870323 - AluJb SINE Alu -23 289 28 2178 86 21 10 chr15 56510776 56511066 -44869455 - AluSg SINE Alu -16 294 2 1410 177 34 37 chr15 56511077 56511371 -44869150 - AluJo SINE Alu -14 298 6 2149 130 0 9 chr15 56511459 56511774 -44868747 + AluSx SINE Alu 1 312 0 2434 82 0 3 chr15 56512621 56512926 -44867595 + AluSg SINE Alu 1 304 -6 1999 109 14 4 chr15 56512982 56513278 -44867243 + AluSg SINE Alu 1 299 0 1037 188 19 0 chr15 56513292 56513499 -44867022 + L1ME2 LINE L1 5665 5875 -289 264 314 93 86 chr15 56513897 56514177 -44866344 - L2 LINE L2 -25 3247 2966 312 302 311 25 chr15 56514284 56514979 -44865542 - L2 LINE L2 -557 2757 1864 22 0 0 0 chr15 56515035 56515057 -44865464 + AT_rich Low_complexity Low_complexity 1 22 0 2034 119 14 3 chr15 56515181 56515476 -44865045 + AluSx SINE Alu 1 298 -14 2034 147 3 0 chr15 56515489 56515782 -44864739 - AluSx SINE Alu -18 294 1 672 99 40 0 chr15 56515800 56515901 -44864620 - L1PB1 LINE L1 -119 6032 5928 188 65 0 32 chr15 56516409 56516440 -44864081 + (TA)n Simple_repeat Simple_repeat 1 30 0 226 213 16 16 chr15 56516467 56516528 -44863993 + (TA)n Simple_repeat Simple_repeat 1 61 0 1549 190 0 21 chr15 56516529 56516818 -44863703 - AluJb SINE Alu -24 288 6 1977 145 31 0 chr15 56517005 56517294 -44863227 - AluSx SINE Alu -14 298 1 2384 86 20 3 chr15 56517551 56517855 -44862666 + AluSg SINE Alu 1 309 -1 2536 64 0 0 chr15 56518077 56518388 -44862133 + AluY SINE Alu 1 311 0 22 0 0 0 chr15 56519102 56519124 -44861397 + AT_rich Low_complexity Low_complexity 1 22 0 258 247 185 0 chr15 56519131 56519212 -44861309 + L2 LINE L2 3178 3273 -40 210 227 160 13 chr15 56519210 56519285 -44861236 + L2 LINE L2 3180 3265 -7 * 2322 105 3 0 chr15 56520595 56520901 -44859620 - AluSp SINE Alu -6 307 1 1564 177 25 11 chr15 56521117 56521399 -44859122 - AluJo SINE Alu -18 294 9 22 35 0 0 chr15 56521751 56521780 -44858741 + AT_rich Low_complexity Low_complexity 1 29 0 214 369 62 0 chr15 56522145 56522275 -44858246 - L2 LINE L2 -16 3297 3160 196 275 0 0 chr15 56522672 56522712 -44857809 - L2 LINE L2 -7 3265 3226 2810 280 95 17 chr15 56522805 56524079 -44856442 + L2 LINE L2 1923 3308 -5 3503 245 161 29 chr15 56524145 56524216 -44856305 + L2 LINE L2 1396 1456 -1857 1032 141 212 20 chr15 56524216 56524414 -44856107 - MER46A DNA MER2_type 0 236 1 3503 245 161 29 chr15 56524414 56526036 -44854485 + L2 LINE L2 1456 3312 -1 2171 87 23 3 chr15 56527301 56527601 -44852920 + AluSq SINE Alu 1 306 -7 2153 96 17 17 chr15 56527991 56528293 -44852228 + AluSx SINE Alu 1 302 -10 258 246 115 31 chr15 56528434 56528564 -44851957 - Charlie8 DNA MER1_type -2153 264 124 846 146 0 8 chr15 56528565 56528695 -44851826 + FLAM_C SINE Alu 1 129 -14 1487 81 70 4 chr15 56528713 56528971 -44851550 + AluY SINE Alu 1 275 -36 230 241 0 51 chr15 56529284 56529363 -44851158 + L1ME2 LINE L1 6071 6145 -19 21 0 0 0 chr15 56529406 56529427 -44851094 + AT_rich Low_complexity Low_complexity 1 21 0 1338 147 18 85 chr15 56529461 56529733 -44850788 - AluJb SINE Alu -58 254 1 1599 150 87 8 chr15 56533676 56533942 -44846579 - AluJo SINE Alu -25 287 1 906 155 87 19 chr15 56533961 56534122 -44846399 - AluJo SINE Alu -124 188 17 1869 136 20 7 chr15 56534691 56534986 -44845535 - AluSx SINE Alu -13 299 1 201 98 24 24 chr15 56535061 56535102 -44845419 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 2329 91 0 0 chr15 56535292 56535579 -44844942 + AluSg SINE Alu 7 293 -17 2189 83 0 7 chr15 56536774 56537050 -44843471 + AluSx SINE Alu 1 274 -38 262 211 19 0 chr15 56538097 56538149 -44842372 + L2 LINE L2 3190 3242 -30 2163 121 0 3 chr15 56538457 56538770 -44841751 + AluSx SINE Alu 1 312 0 728 202 8 0 chr15 56539508 56539627 -44840894 + FLAM_C SINE Alu 2 121 -22 2213 101 3 10 chr15 56539974 56540281 -44840240 + AluSx SINE Alu 1 305 -7 1808 102 0 74 chr15 56540590 56540875 -44839646 - AluSx SINE Alu -13 299 36 181 125 21 21 chr15 56542599 56542647 -44837874 + (CGG)n Simple_repeat Simple_repeat 3 50 0 1928 119 33 3 chr15 56543051 56543354 -44837167 + AluSx SINE Alu 1 312 0 509 218 309 0 chr15 56543472 56543715 -44836806 - MER5C DNA MER1_type 0 324 7 640 133 168 0 chr15 56543804 56543986 -44836535 + FLAM_C SINE Alu 2 202 0 994 164 12 0 chr15 56543986 56544151 -44836370 + AluSg/x SINE Alu 128 294 -16 330 244 106 8 chr15 56544351 56544474 -44836047 + MIR SINE MIR 128 262 0 180 152 0 0 chr15 56544903 56544936 -44835585 + (TA)n Simple_repeat Simple_repeat 1 33 0 2023 141 3 3 chr15 56545031 56545336 -44835185 + AluSx SINE Alu 1 305 -7 34 0 0 0 chr15 56545387 56545421 -44835100 + AT_rich Low_complexity Low_complexity 1 34 0 1627 169 24 10 chr15 56545521 56545816 -44834705 - AluSx SINE Alu -13 299 1 2075 96 15 0 chr15 56545824 56546095 -44834426 - AluSx SINE Alu -7 305 31 2157 119 7 0 chr15 56546287 56546589 -44833932 + AluSx SINE Alu 1 304 -8 464 125 0 0 chr15 56546758 56546822 -44833699 + AluSp/q SINE Alu 238 301 -12 2322 96 7 0 chr15 56547088 56547389 -44833132 - AluSx SINE Alu -9 303 1 25 31 0 0 chr15 56548205 56548237 -44832284 + AT_rich Low_complexity Low_complexity 1 32 0 230 326 76 0 chr15 56548953 56549045 -44831476 + MIR SINE MIR 36 134 -74 2106 115 0 0 chr15 56549617 56549903 -44830618 - AluSx SINE Alu -26 286 1 22 70 0 0 chr15 56551608 56551651 -44828870 + AT_rich Low_complexity Low_complexity 1 43 0 2098 108 31 7 chr15 56553165 56553453 -44827068 - AluSx SINE Alu -17 295 1 22 0 0 0 chr15 56553602 56553624 -44826897 + AT_rich Low_complexity Low_complexity 1 22 0 2184 125 0 0 chr15 56555063 56555366 -44825155 + AluSx SINE Alu 1 303 -9 27 49 0 0 chr15 56555431 56555472 -44825049 + AT_rich Low_complexity Low_complexity 1 41 0 2327 87 3 7 chr15 56555613 56555922 -44824599 - AluSq SINE Alu -5 308 1 3197 206 61 10 chr15 56555938 56556622 -44823899 - L1ME1 LINE L1 0 6166 5448 197 244 70 43 chr15 56556702 56556817 -44823704 - L2 LINE L2 -97 3216 3099 2438 221 22 19 chr15 56557107 56557646 -44822875 - MLT1E3 LTR MaLR -6 618 47 2109 126 7 3 chr15 56557827 56558129 -44822392 - AluSq SINE Alu -10 303 1 1994 143 19 7 chr15 56558179 56558487 -44822034 - AluSx SINE Alu 0 312 1 480 282 11 109 chr15 56558969 56559257 -44821264 - L2 LINE L2 -564 2750 2397 775 149 18 0 chr15 56559428 56559542 -44820979 + FLAM_A SINE Alu 6 121 -21 26 0 0 0 chr15 56559619 56559645 -44820876 + AT_rich Low_complexity Low_complexity 1 26 0 2104 147 0 0 chr15 56561328 56561634 -44818887 - AluSx SINE Alu -6 306 1 1250 149 77 5 chr15 56561702 56561924 -44818597 - AluJo SINE Alu -27 285 48 807 127 35 12 chr15 56562018 56562191 -44818330 + CT-rich Low_complexity Low_complexity 1 177 0 2225 110 7 3 chr15 56562191 56562492 -44818029 - AluSp SINE Alu -11 302 1 505 147 129 60 chr15 56562764 56562880 -44817641 + L2 LINE L2 3169 3292 -21 2286 89 7 3 chr15 56562987 56563279 -44817242 - AluSp SINE Alu -20 293 1 364 278 63 16 chr15 56563663 56563789 -44816732 + MER5A DNA MER1_type 28 159 -30 2292 111 0 0 chr15 56563823 56564121 -44816400 + AluSx SINE Alu 1 298 -14 180 0 0 0 chr15 56564299 56564319 -44816202 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 2042 117 0 52 chr15 56565030 56565354 -44815167 + AluSg SINE Alu 1 307 -3 249 147 27 120 chr15 56565400 56565475 -44815046 + MLT1L LTR MaLR 5 72 -543 1128 210 40 98 chr15 56565531 56565863 -44814658 + MLT1L LTR MaLR 196 499 -116 2089 112 0 26 chr15 56565863 56566168 -44814353 - AluY SINE Alu -14 297 1 1128 210 40 98 chr15 56566168 56566263 -44814258 + MLT1L LTR MaLR 499 598 -17 1771 141 28 3 chr15 56566450 56566733 -44813788 - AluSx SINE Alu -22 290 1 2138 99 0 0 chr15 56566936 56567258 -44813263 + AluSx SINE Alu 11 332 0 2257 101 0 7 chr15 56567984 56568292 -44812229 + AluY SINE Alu 1 306 -5 1647 123 4 4 chr15 56568566 56568794 -44811727 + AluSx SINE Alu 1 228 -84 227 265 80 84 chr15 56568821 56569059 -44811462 - L1ME4a LINE L1 -11 6110 5874 1699 144 10 41 chr15 56569843 56570135 -44810386 - AluJo SINE Alu -13 299 17 287 304 74 0 chr15 56570656 56570791 -44809730 + MER117 DNA MER1_type 53 197 0 1996 109 7 14 chr15 56571892 56572175 -44808346 - AluSq SINE Alu -14 299 19 683 162 26 0 chr15 56572579 56572692 -44807829 + MSTD LTR MaLR 1 116 -280 1386 159 43 0 chr15 56572692 56572924 -44807597 - MSTB LTR MaLR 0 426 185 453 224 6 146 chr15 56572928 56572945 -44807576 - MIR SINE MIR -59 149 131 1818 112 0 0 chr15 56572945 56573186 -44807335 - AluSq SINE Alu -26 287 47 453 224 6 146 chr15 56573186 56573341 -44807180 - MIR SINE MIR -77 131 2 2190 114 0 0 chr15 56573432 56573721 -44806800 - AluSx SINE Alu -23 289 1 1421 84 0 0 chr15 56575107 56575285 -44805236 + AluSp SINE Alu 1 178 -135 1000 231 77 0 chr15 56575627 56575835 -44804686 + MIR SINE MIR 7 230 -32 374 331 96 0 chr15 56576077 56576243 -44804278 + L2 LINE L2 2872 3053 -219 2378 95 0 13 chr15 56576804 56577121 -44803400 + AluSp SINE Alu 1 313 0 200 98 0 49 chr15 56578985 56579026 -44801495 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 271 283 19 47 chr15 56579038 56579144 -44801377 - MIR SINE MIR -95 167 65 566 264 67 19 chr15 56579863 56580071 -44800450 + L1ME3 LINE L1 5941 6158 -4 546 321 57 12 chr15 56580129 56580375 -44800146 + L2 LINE L2 2997 3253 -60 1244 188 14 31 chr15 56580723 56580946 -44799575 + MER20 DNA MER1_type 1 219 0 1183 49 11 27 chr15 56581062 56581245 -44799276 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2039 123 0 4 chr15 56581252 56581528 -44798993 - AluSx SINE Alu -37 275 1 478 323 41 31 chr15 56582665 56582860 -44797661 + MIR3 SINE MIR 2 198 -10 234 0 0 0 chr15 56583723 56583749 -44796772 + (CA)n Simple_repeat Simple_repeat 2 27 0 677 179 136 0 chr15 56583757 56583897 -44796624 + MER20 DNA MER1_type 1 159 -60 1124 191 18 79 chr15 56583921 56584359 -44796162 + MLT1A1 LTR MaLR 1 396 0 2363 233 157 48 chr15 56584638 56585231 -44795290 - L2 LINE L2 -1153 2161 1434 2624 213 54 6 chr15 56585231 56585772 -44794749 - MLT1F1 LTR MaLR 0 567 1 2363 233 157 48 chr15 56585772 56586084 -44794437 - L2 LINE L2 -1880 1434 1157 2485 87 0 0 chr15 56586100 56586411 -44794110 + AluY SINE Alu 1 311 0 243 0 0 0 chr15 56586482 56586509 -44794012 + (CA)n Simple_repeat Simple_repeat 2 28 0 1759 153 83 0 chr15 56586584 56586872 -44793649 - AluJb SINE Alu 0 312 1 391 333 85 16 chr15 56587076 56587322 -44793199 + L3 LINE CR1 1311 1573 -4 286 146 0 0 chr15 56587338 56587386 -44793135 - L2 LINE L2 -5 3308 3261 1850 154 34 0 chr15 56588407 56588700 -44791821 + AluJb SINE Alu 1 303 -9 682 288 210 23 chr15 56588786 56589258 -44791263 - L1MC4a LINE L1 -1736 6072 5513 3743 88 14 2 chr15 56589299 56589790 -44790731 + L1PA10 LINE L1 5666 6162 -6 738 247 31 0 chr15 56590585 56590747 -44789774 - MIR SINE MIR -48 214 48 944 189 18 0 chr15 56590898 56591090 -44789431 - AluJb SINE Alu 0 307 113 2302 98 3 3 chr15 56591398 56591704 -44788817 + AluSp SINE Alu 1 306 -7 870 338 184 10 chr15 56593325 56594048 -44786473 + L2 LINE L2 1907 2755 -559 1476 215 71 0 chr15 56594086 56594412 -44786109 - MSTC LTR MaLR -12 416 68 1964 156 0 10 chr15 56594412 56594713 -44785808 + AluJo SINE Alu 1 298 -14 926 185 0 0 chr15 56594713 56594884 -44785637 + AluJb SINE Alu 134 304 0 509 152 13 0 chr15 56594884 56594963 -44785558 - MSTC LTR MaLR -348 80 1 456 51 0 0 chr15 56595032 56595091 -44785430 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 1870 96 67 32 chr15 56595103 56595385 -44785136 - AluSx SINE Alu -20 292 1 300 297 84 128 chr15 56595434 56595563 -44784958 + L2 LINE L2 2990 3123 -149 2343 148 31 96 chr15 56595563 56595960 -44784561 - MSTB2 LTR MaLR 0 457 96 2501 77 0 3 chr15 56595960 56596270 -44784251 - AluSg SINE Alu -1 309 1 2343 148 31 96 chr15 56596270 56596360 -44784161 - MSTB2 LTR MaLR -361 96 2 300 297 84 128 chr15 56596360 56596526 -44783995 + L2 LINE L2 3123 3272 0 26 64 0 0 chr15 56597063 56597110 -44783411 + AT_rich Low_complexity Low_complexity 1 47 0 2197 113 3 3 chr15 56597999 56598300 -44782221 + AluSx SINE Alu 3 303 -9 743 281 60 18 chr15 56598522 56598866 -44781655 + MLT1I LTR MaLR 1 390 -19 278 345 58 14 chr15 56598892 56599031 -44781490 - L2 LINE L2 -208 3064 2920 204 40 0 0 chr15 56599059 56599084 -44781437 + (T)n Simple_repeat Simple_repeat 1 25 0 2219 97 38 0 chr15 56599592 56599882 -44780639 + AluSx SINE Alu 1 301 -11 220 321 0 0 chr15 56600235 56600288 -44780233 + MIR SINE MIR 47 99 -163 229 65 0 0 chr15 56600374 56600420 -44780101 + LTR66 LTR ERVL 394 439 -171 399 284 0 75 chr15 56600483 56600617 -44779904 + MIR SINE MIR 31 154 -108 1237 194 0 37 chr15 56600670 56600912 -44779609 + AluJo SINE Alu 5 237 -75 2975 102 16 7 chr15 56600913 56601344 -44779177 + MER41B LTR ERV1 1 435 -200 31 44 0 0 chr15 56601344 56601389 -44779132 + AT_rich Low_complexity Low_complexity 1 45 0 1361 123 9 9 chr15 56601396 56601607 -44778914 + MER41B LTR ERV1 425 635 0 338 211 0 0 chr15 56601607 56601664 -44778857 + AluJo SINE Alu 235 291 -11 40 21 0 0 chr15 56601829 56601876 -44778645 + AT_rich Low_complexity Low_complexity 1 47 0 901 145 12 16 chr15 56602153 56602400 -44778121 + CT-rich Low_complexity Low_complexity 1 246 0 1779 166 20 0 chr15 56602423 56602718 -44777803 - AluJo SINE Alu -11 301 1 306 0 0 0 chr15 56602957 56602991 -44777530 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2045 117 0 14 chr15 56602998 56603288 -44777233 - AluSx SINE Alu -26 286 1 632 179 172 13 chr15 56603304 56603455 -44777066 + MER5A DNA MER1_type 15 189 0 284 273 0 0 chr15 56604133 56604199 -44776322 + L1ME4a LINE L1 5553 5618 -503 2381 232 74 19 chr15 56604266 56605485 -44775036 - L1MC4 LINE L1 -145 7897 6459 585 180 33 0 chr15 56606353 56606475 -44774046 - LTR37A LTR ERV1 0 426 301 258 266 0 16 chr15 56606490 56606554 -44773967 + GA-rich Low_complexity Low_complexity 3 65 0 238 274 14 0 chr15 56606565 56606638 -44773883 + L1ME4a LINE L1 5628 5701 -420 221 279 89 0 chr15 56606863 56606953 -44773568 - MIR SINE MIR -94 114 19 366 203 13 13 chr15 56606974 56607053 -44773468 - LTR67 LTR ERVL -6 551 473 655 243 92 84 chr15 56607054 56607117 -44773404 + L1MC4 LINE L1 7121 7182 -860 2308 101 3 7 chr15 56607117 56607423 -44773098 - AluSp SINE Alu -8 305 1 655 243 92 84 chr15 56607423 56608195 -44772326 + L1MC4 LINE L1 7182 7980 -62 268 281 0 0 chr15 56608536 56608600 -44771921 - LTR67 LTR ERVL -379 178 115 2269 102 3 6 chr15 56608778 56609091 -44771430 + AluSp SINE Alu 2 313 0 22 43 0 21 chr15 56609104 56609130 -44771391 + AT_rich Low_complexity Low_complexity 1 27 -19 1877 130 4 11 chr15 56609130 56609407 -44771114 + AluJb SINE Alu 17 291 -21 22 43 0 21 chr15 56609407 56609427 -44771094 + AT_rich Low_complexity Low_complexity 27 46 0 2174 133 3 0 chr15 56609613 56609922 -44770599 + AluSx SINE Alu 1 310 -2 735 314 64 60 chr15 56610316 56610880 -44769641 + L2 LINE L2 2380 2945 -369 1765 202 106 6 chr15 56610947 56611304 -44769217 - MSTD LTR MaLR -3 393 1 455 286 40 0 chr15 56611397 56611523 -44768998 + L2 LINE L2 3137 3267 -5 2208 123 0 0 chr15 56612536 56612836 -44767685 + AluSx SINE Alu 1 300 -12 258 274 16 0 chr15 56613135 56613197 -44767324 + MIR3 SINE MIR 106 168 -40 367 233 149 52 chr15 56613659 56613853 -44766668 + L1ME4a LINE L1 5766 5998 -123 1604 189 0 43 chr15 56613853 56614176 -44766345 + AluJo SINE Alu 1 309 -3 367 233 149 52 chr15 56614176 56614269 -44766252 + L1ME4a LINE L1 5998 6081 -40 323 246 15 0 chr15 56614396 56614461 -44766060 - MER58 DNA MER1_type 0 2420 2355 1513 164 39 68 chr15 56614474 56614857 -44765664 + THE1C LTR MaLR 1 372 -3 216 304 0 14 chr15 56615343 56615412 -44765109 + (CA)n Simple_repeat Simple_repeat 1 68 0 797 108 16 49 chr15 56617031 56617216 -44763305 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 251 175 18 0 chr15 56617216 56617273 -44763248 + CT-rich Low_complexity Low_complexity 3 60 0 250 388 9 0 chr15 56617345 56617461 -44763060 + MIR SINE MIR 30 146 -62 531 231 37 0 chr15 56617828 56617962 -44762559 + L1ME4a LINE L1 5778 5916 -205 24 32 0 0 chr15 56618111 56618142 -44762379 + AT_rich Low_complexity Low_complexity 1 31 0 346 330 9 17 chr15 56618769 56618884 -44761637 + MIR SINE MIR 23 136 -126 297 299 16 8 chr15 56619121 56619248 -44761273 + AluSp SINE Alu 2 129 -174 575 274 103 55 chr15 56620487 56620779 -44759742 + MER102b DNA MER1_type 14 319 -22 359 358 86 30 chr15 56622031 56622263 -44758258 + MIR SINE MIR 12 256 -6 221 333 78 35 chr15 56623845 56623986 -44756535 - MIR SINE MIR -18 244 98 2199 103 7 10 chr15 56625119 56625419 -44755102 + AluSx SINE Alu 1 299 -13 506 261 56 35 chr15 56625497 56625639 -44754882 + MIR3 SINE MIR 34 178 -30 291 288 9 90 chr15 56625649 56625760 -44754761 + L2 LINE L2 3166 3267 -5 25561 66 3 4 chr15 56626547 56629831 -44750690 + L1PA4 LINE L1 3 3285 -2861 14496 29 7 4 chr15 56629985 56632371 -44748150 + L1PA4 LINE L1 3765 6154 -1 1186 181 84 58 chr15 56632729 56632968 -44747553 - MER33 DNA MER1_type -2267 318 67 1917 118 48 0 chr15 56632968 56633268 -44747253 - AluSx SINE Alu 0 313 1 1186 181 84 58 chr15 56633268 56633337 -44747184 - MER33 DNA MER1_type -2518 67 1 341 285 182 27 chr15 56633403 56633772 -44746749 - L1M4 LINE L1 -1542 4604 4179 673 198 6 38 chr15 56633780 56633937 -44746584 - MLT1F1 LTR MaLR -108 459 308 658 201 0 62 chr15 56634003 56634147 -44746374 - MLT1F1 LTR MaLR -282 285 151 434 207 56 29 chr15 56634132 56634239 -44746282 + MLT1F1 LTR MaLR 21 129 -445 * 308 284 50 30 chr15 56634391 56634592 -44745929 - L1M4 LINE L1 -3789 2357 2153 914 168 0 60 chr15 56634892 56635059 -44745462 - AluJo SINE Alu -30 282 126 857 290 116 52 chr15 56635231 56635470 -44745051 - HAL1b LINE L1 -520 828 606 2176 120 3 0 chr15 56635470 56635762 -44744759 - AluSg SINE Alu -16 294 2 857 290 116 52 chr15 56635762 56635899 -44744622 - HAL1b LINE L1 -742 606 479 2300 73 3 0 chr15 56635899 56636185 -44744336 - AluY SINE Alu -4 307 21 857 290 116 52 chr15 56636185 56636542 -44743979 - HAL1b LINE L1 -869 479 47 327 197 26 40 chr15 56637757 56637833 -44742688 + MIR SINE MIR 80 154 -108 408 109 47 0 chr15 56639788 56639852 -44740669 - AluJ/FLAM SINE Alu -244 68 2 1481 165 92 26 chr15 56640039 56640312 -44740209 - AluJb SINE Alu -21 291 1 243 182 44 133 chr15 56641121 56641302 -44739219 + Charlie7 DNA MER1_type 2448 2612 0 394 294 71 41 chr15 56641486 56641683 -44738838 - MIR SINE MIR 0 262 60 204 125 0 0 chr15 56642284 56642316 -44738205 + (TG)n Simple_repeat Simple_repeat 2 33 0 1982 115 22 26 chr15 56642390 56642702 -44737819 + AluSx SINE Alu 1 311 -1 223 91 23 23 chr15 56642968 56643012 -44737509 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 441 103 0 0 chr15 56643476 56643544 -44736977 + (TC)n Simple_repeat Simple_repeat 2 69 0 207 0 0 0 chr15 56643544 56643567 -44736954 + (CA)n Simple_repeat Simple_repeat 1 23 0 330 324 21 14 chr15 56644077 56644222 -44736299 - L2 LINE L2 -202 3070 2925 248 314 164 29 chr15 56644215 56644422 -44736099 - L2 LINE L2 -527 2787 2553 * 622 258 80 80 chr15 56644972 56645071 -44735450 + MER102b DNA MER1_type 1 99 -1329 2369 100 0 0 chr15 56645071 56645371 -44735150 - AluSx SINE Alu -10 302 3 622 258 80 80 chr15 56645371 56645608 -44734913 + MER102b DNA MER1_type 98 337 -4 204 302 48 15 chr15 56645883 56645965 -44734556 + MIR SINE MIR 67 152 -56 1964 148 16 19 chr15 56647587 56647898 -44732623 + AluJo SINE Alu 1 310 -2 302 264 84 39 chr15 56647909 56648087 -44732434 - L1ME LINE L1 -432 5689 5504 309 302 35 0 chr15 56648282 56648368 -44732153 + MIR SINE MIR 2 90 -172 611 214 60 50 chr15 56648374 56648576 -44731945 - MER20 DNA MER1_type 0 219 16 317 283 33 0 chr15 56648576 56648668 -44731853 + MIR SINE MIR 110 204 -58 229 273 15 0 chr15 56648844 56648910 -44731611 - L1ME4a LINE L1 -78 6043 5977 242 268 36 0 chr15 56648914 56648970 -44731551 + L2 LINE L2 3252 3309 -4 1911 120 0 0 chr15 56649034 56649292 -44731229 - AluSx SINE Alu -46 266 9 21 0 0 0 chr15 56649386 56649407 -44731114 + AT_rich Low_complexity Low_complexity 1 21 0 613 261 7 14 chr15 56649804 56649946 -44730575 + MLT1E LTR MaLR 3 143 -450 1264 223 29 41 chr15 56649972 56650317 -44730204 + MLT2C1 LTR ERVL 57 397 0 1125 219 133 58 chr15 56650319 56650717 -44729804 + MLT1E LTR MaLR 140 593 0 233 182 0 23 chr15 56650898 56650942 -44729579 - MLT1K LTR MaLR -357 231 189 21 0 0 0 chr15 56653001 56653022 -44727499 + AT_rich Low_complexity Low_complexity 1 21 0 234 250 50 0 chr15 56653458 56653518 -44727003 - L2 LINE L2 0 3272 3210 681 212 0 0 chr15 56653615 56653733 -44726788 + FLAM_C SINE Alu 1 118 -15 1936 147 23 13 chr15 56653905 56654212 -44726309 - AluSx SINE Alu 0 312 3 300 289 125 0 chr15 56654271 56654375 -44726146 - MER94 DNA DNA -7 127 11 1349 153 23 14 chr15 56654583 56654799 -44725722 - MER20 DNA MER1_type -1 218 1 30 0 0 0 chr15 56654933 56654963 -44725558 + AT_rich Low_complexity Low_complexity 1 30 0 1431 183 50 37 chr15 56654971 56655271 -44725250 + AluJo SINE Alu 1 304 -8 236 236 112 0 chr15 56655385 56655474 -44725047 - AluS SINE Alu -203 100 2 480 282 11 109 chr15 56655949 56656237 -44724284 - L2 LINE L2 -564 2750 2397 775 149 18 0 chr15 56656408 56656522 -44723999 + FLAM_A SINE Alu 6 121 -21 26 0 0 0 chr15 56656599 56656625 -44723896 + AT_rich Low_complexity Low_complexity 1 26 0 1276 162 0 0 chr15 56658308 56658506 -44722015 - AluSg/x SINE Alu -6 304 107 194 314 0 0 chr15 56659230 56659281 -44721240 - MIR SINE MIR -2 260 210 417 295 101 8 chr15 56659578 56659707 -44720814 - L2 LINE L2 -6 3266 3126 180 365 19 45 chr15 56661687 56661843 -44718678 + L2 LINE L2 2913 3064 -208 195 365 144 10 chr15 56662115 56662219 -44718302 + L2 LINE L2 3150 3267 -5 229 293 95 35 chr15 56662421 56662537 -44717984 - L2 LINE L2 -8 3264 3142 2113 128 0 10 chr15 56662600 56662904 -44717617 + AluSx SINE Alu 12 312 0 746 129 0 0 chr15 56663075 56663176 -44717345 - AluJ/FLAM SINE Alu -210 102 2 222 363 62 9 chr15 56663339 56663452 -44717069 + L2 LINE L2 3154 3272 0 275 287 26 52 chr15 56664669 56664784 -44715737 + L2 LINE L2 3202 3313 0 229 337 69 22 chr15 56665969 56666123 -44714398 - MIR SINE MIR -72 190 32 806 181 23 0 chr15 56666192 56666325 -44714196 + FLAM_C SINE Alu 2 137 -6 1828 174 0 77 chr15 56667393 56667718 -44712803 - MLT1A1 LTR MaLR -2 363 71 2867 97 6 0 chr15 56667718 56668080 -44712441 - THE1B LTR MaLR 0 364 1 1828 174 0 77 chr15 56668080 56668146 -44712375 - MLT1A1 LTR MaLR -294 71 2 3516 122 32 2 chr15 56668927 56669460 -44711061 - L1PB1 LINE L1 -266 5885 5337 * 25723 102 9 10 chr15 56669453 56673141 -44707380 - L1 LINE L1 -2452 3694 11 6294 196 25 13 chr15 56673130 56674474 -44706047 + L1 LINE L1 3701 5059 -1087 * 2223 101 0 14 chr15 56674589 56674886 -44705635 + AluSg SINE Alu 1 293 -17 418 251 251 12 chr15 56674938 56675289 -44705232 + LTR16A1 LTR ERVL 4 450 0 672 281 97 72 chr15 56675592 56676023 -44704498 + MLT1K LTR MaLR 141 582 -6 2225 54 3 44 chr15 56676072 56676402 -44704119 + AluY SINE Alu 1 318 0 183 42 0 0 chr15 56676535 56676559 -44703962 + (A)n Simple_repeat Simple_repeat 1 24 0 1611 232 67 34 chr15 56676913 56677349 -44703172 + MER69 DNA AcHobo 1 450 -2076 2072 114 7 0 chr15 56677359 56677672 -44702849 + AluSx SINE Alu 1 315 0 585 259 142 29 chr15 56677672 56677988 -44702533 + MER69 DNA AcHobo 2067 2418 -108 792 144 8 8 chr15 56677988 56678113 -44702408 + Tigger2 DNA MER2_type 1 125 -2593 2102 110 27 27 chr15 56678120 56678456 -44702065 + Tigger2 DNA MER2_type 2351 2686 -32 253 102 109 219 chr15 56678473 56678601 -44701920 + MER69 DNA AcHobo 2413 2526 0 1740 165 33 0 chr15 56678756 56679028 -44701493 - AluSx SINE Alu -31 281 1 702 278 74 0 chr15 56680699 56680875 -44699646 - MLT1A1 LTR MaLR -3 362 174 7636 49 1 22 chr15 56680886 56681879 -44698642 + L1PA8 LINE L1 5216 6172 0 237 360 48 8 chr15 56681883 56682008 -44698513 - MLT1K LTR MaLR -445 143 14 1314 202 0 0 chr15 56682178 56682436 -44698085 + L1P LINE L1 5069 5326 -820 3056 221 109 12 chr15 56682438 56683339 -44697182 - L1PBa LINE L1 -5870 993 6 1016 189 21 11 chr15 56683401 56683592 -44696929 - MLT1A1 LTR MaLR 0 365 173 214 295 143 9 chr15 56683719 56683824 -44696697 - L2 LINE L2 -17 3296 3178 1900 264 78 50 chr15 56684163 56684966 -44695555 + Zaphod DNA AcHobo 56 881 -3150 1653 218 28 25 chr15 56684934 56685137 -44695384 + Zaphod DNA AcHobo 3595 3796 -235 * 2167 116 0 7 chr15 56685137 56685454 -44695067 + AluSx SINE Alu 1 312 0 1653 218 28 25 chr15 56685454 56685685 -44694836 + Zaphod DNA AcHobo 3796 4030 -1 1588 98 5 0 chr15 56685725 56685940 -44694581 + THE1B-int LTR MaLR 1365 1580 0 2651 103 43 6 chr15 56685940 56686291 -44694230 + THE1B LTR MaLR 1 364 0 1890 144 3 39 chr15 56686342 56686648 -44693873 + AluJb SINE Alu 1 295 -17 307 302 101 18 chr15 56686649 56686818 -44693703 + L1M4 LINE L1 4738 4920 -1226 289 307 183 7 chr15 56686882 56687019 -44693502 - L2 LINE L2 -165 3107 2947 8324 186 53 63 chr15 56687061 56688833 -44691688 - MER52A LTR ERV1 0 1755 1 203 0 37 0 chr15 56689260 56689287 -44691234 + (GA)n Simple_repeat Simple_repeat 2 29 0 240 59 0 0 chr15 56689560 56689594 -44690927 + (CA)n Simple_repeat Simple_repeat 1 34 0 1242 155 35 158 chr15 56691710 56692084 -44688437 - MLT1A1 LTR MaLR -37 328 1 370 272 5 122 chr15 56692263 56692476 -44688045 - MIR SINE MIR 0 262 75 324 259 12 0 chr15 56693562 56693647 -44686874 + MIR SINE MIR 177 262 0 346 333 0 25 chr15 56693655 56693775 -44686746 - MIR SINE MIR -55 153 37 199 350 100 12 chr15 56693787 56693867 -44686654 - L2 LINE L2 0 3272 3186 30 27 0 0 chr15 56694049 56694086 -44686435 + AT_rich Low_complexity Low_complexity 1 37 0 226 204 19 37 chr15 56694310 56694347 -44686174 + CT-rich Low_complexity Low_complexity 2 39 -15 1731 174 55 0 chr15 56694347 56694640 -44685881 - AluJb SINE Alu -1 311 3 226 204 19 37 chr15 56694640 56694656 -44685865 + CT-rich Low_complexity Low_complexity 39 54 0 334 335 132 17 chr15 56696096 56696392 -44684129 - L2 LINE L2 -9 3263 2934 2104 109 10 3 chr15 56696959 56697252 -44683269 - AluSx SINE Alu -15 297 3 640 200 26 74 chr15 56697488 56697678 -44682843 + LTR41 LTR ERVL 1 181 -592 428 163 25 70 chr15 56697975 56698119 -44682402 + LTR50 LTR ERVL 639 795 0 363 78 0 0 chr15 56698190 56698241 -44682280 + (TC)n Simple_repeat Simple_repeat 2 52 0 408 20 0 0 chr15 56698241 56698290 -44682231 + (CA)n Simple_repeat Simple_repeat 1 49 0 299 311 34 20 chr15 56698334 56698482 -44682039 - LTR16C LTR ERVL 0 491 342 24 0 0 0 chr15 56698671 56698695 -44681826 + AT_rich Low_complexity Low_complexity 1 24 0 2051 122 0 3 chr15 56700895 56701189 -44679332 + AluSx SINE Alu 1 293 -19 28 0 0 0 chr15 56701189 56701217 -44679304 + AT_rich Low_complexity Low_complexity 1 28 0 1308 136 99 16 chr15 56701637 56701880 -44678641 + MER21A LTR ERV1 1 263 -668 3248 129 44 30 chr15 56701886 56702428 -44678093 + MER21A LTR ERV1 376 925 -6 352 247 24 24 chr15 56702562 56702647 -44677874 + MIR SINE MIR 15 99 -163 332 259 0 56 chr15 56702696 56702804 -44677717 + MIR SINE MIR 48 149 -113 2093 107 10 10 chr15 56702827 56703118 -44677403 + AluSx SINE Alu 1 291 -21 239 262 54 77 chr15 56704124 56704292 -44676229 - L3 LINE CR1 -1 1576 1413 214 318 16 16 chr15 56704297 56704360 -44676161 + MIR SINE MIR 20 82 -180 790 234 88 0 chr15 56704444 56704649 -44675872 + L1MB7 LINE L1 5953 6175 -9 1389 232 18 6 chr15 56704894 56705222 -44675299 - MER46C DNA MER2_type -1 337 6 2510 71 0 0 chr15 56705797 56706106 -44674415 + AluY SINE Alu 1 309 -2 249 173 0 39 chr15 56706207 56706259 -44674262 + L2 LINE L2 3183 3232 -81 21 0 0 0 chr15 56707995 56708016 -44672505 + AT_rich Low_complexity Low_complexity 1 21 0 2776 159 13 54 chr15 56709601 56710158 -44670363 - L1MA8 LINE L1 -157 6134 5599 25 31 0 0 chr15 56710177 56710209 -44670312 + AT_rich Low_complexity Low_complexity 1 32 0 339 355 5 11 chr15 56710642 56710831 -44669690 + L1ME4a LINE L1 4477 4664 -1482 22 56 0 0 chr15 56711190 56711226 -44669295 + AT_rich Low_complexity Low_complexity 1 36 0 28 29 0 0 chr15 56711502 56711537 -44668984 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr15 56712471 56712492 -44668029 + (A)n Simple_repeat Simple_repeat 1 21 0 323 305 78 7 chr15 56712569 56712710 -44667811 + L1ME4a LINE L1 5754 5904 -217 23 0 0 0 chr15 56712710 56712733 -44667788 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr15 56712776 56712808 -44667713 + AT_rich Low_complexity Low_complexity 1 32 0 490 290 44 41 chr15 56712831 56713172 -44667349 + L1ME4a LINE L1 5563 5904 -217 1083 229 11 105 chr15 56713447 56713685 -44666836 + MLT1A2 LTR MaLR 4 200 -174 2248 93 20 7 chr15 56713685 56713986 -44666535 + AluSc SINE Alu 1 305 -4 1083 229 11 105 chr15 56713986 56714100 -44666421 + MLT1A2 LTR MaLR 200 323 -51 185 297 40 0 chr15 56714113 56714187 -44666334 + L3 LINE CR1 889 965 -612 195 42 0 0 chr15 56715748 56715772 -44664749 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 842 172 41 7 chr15 56715778 56715923 -44664598 - AluJo SINE Alu -44 268 119 216 0 0 0 chr15 56715969 56715993 -44664528 + (CA)n Simple_repeat Simple_repeat 1 24 0 2094 123 10 0 chr15 56716741 56717042 -44663479 + AluSx SINE Alu 5 308 -4 244 269 13 13 chr15 56717453 56717531 -44662990 + MIR SINE MIR 172 249 -13 2201 118 0 0 chr15 56718543 56718840 -44661681 - AluSx SINE Alu -14 298 2 395 241 56 9 chr15 56719134 56719242 -44661279 - MIR SINE MIR -56 206 94 488 266 79 78 chr15 56719429 56719831 -44660690 - L1MC4a LINE L1 -105 6016 5594 2010 133 7 17 chr15 56719831 56720132 -44660389 - AluJb SINE Alu -14 298 1 488 266 79 78 chr15 56720132 56720299 -44660222 - L1MC4a LINE L1 -527 5594 5429 927 278 86 19 chr15 56720686 56721250 -44659271 - L1MC4 LINE L1 -377 7431 7019 51 0 0 0 chr15 56721336 56721387 -44659134 + AT_rich Low_complexity Low_complexity 1 51 0 2152 122 7 0 chr15 56721394 56721689 -44658832 + AluSx SINE Alu 1 297 -15 851 132 0 0 chr15 56721693 56721807 -44658714 - AluJb SINE Alu -198 114 1 731 231 133 8 chr15 56721812 56722068 -44658453 - L1MC4 LINE L1 -964 7078 6791 32 57 0 0 chr15 56722606 56722659 -44657862 + AT_rich Low_complexity Low_complexity 1 53 0 182 143 20 0 chr15 56722802 56722851 -44657670 + (TA)n Simple_repeat Simple_repeat 2 51 0 226 274 0 0 chr15 56722864 56722926 -44657595 - L1MC4a LINE L1 -1355 4791 4730 332 50 0 0 chr15 56723192 56723232 -44657289 + L1MA4A LINE L1 6251 6290 -13 2031 125 30 3 chr15 56723508 56723805 -44656716 - AluSx SINE Alu -7 305 1 248 303 91 20 chr15 56723908 56724084 -44656437 + MIR SINE MIR 2 241 -21 207 0 0 0 chr15 56724894 56724917 -44655604 + (A)n Simple_repeat Simple_repeat 1 23 0 321 120 0 0 chr15 56725358 56725408 -44655113 + L1ME3A LINE L1 6115 6164 -6 755 279 122 30 chr15 56725453 56725814 -44654707 - L2 LINE L2 -359 2955 2562 589 271 33 11 chr15 56725812 56725992 -44654529 - L1M2 LINE L1 -388 5782 5611 * 663 287 87 32 chr15 56726059 56726156 -44654365 + LTR16C LTR ERVL 85 175 -316 1717 178 30 41 chr15 56726156 56726522 -44653999 + MLT1A1 LTR MaLR 4 365 0 663 287 87 32 chr15 56726522 56726734 -44653787 + LTR16C LTR ERVL 175 411 -80 2301 107 3 0 chr15 56727223 56727533 -44652988 + AluY SINE Alu 1 311 0 378 304 88 12 chr15 56727891 56727910 -44652611 - L2 LINE L2 -9 3304 3288 2228 102 0 16 chr15 56727910 56728213 -44652308 + AluSq SINE Alu 1 298 -15 378 304 88 12 chr15 56728213 56728364 -44652157 - L2 LINE L2 -25 3288 3121 336 308 22 65 chr15 56729109 56729294 -44651227 - LTR16A1 LTR ERVL -113 344 168 185 146 21 0 chr15 56729419 56729467 -44651054 + CT-rich Low_complexity Low_complexity 2 50 0 522 207 0 0 chr15 56729480 56729649 -44650872 + CT-rich Low_complexity Low_complexity 1 169 0 263 113 19 0 chr15 56729657 56729710 -44650811 + (CA)n Simple_repeat Simple_repeat 2 55 0 2092 144 0 0 chr15 56731534 56731833 -44648688 - AluSx SINE Alu -13 299 1 273 233 46 93 chr15 56731844 56732007 -44648514 - MIR SINE MIR -56 206 47 2075 121 13 20 chr15 56732127 56732433 -44648088 + AluSx SINE Alu 1 304 -8 732 312 142 77 chr15 56734522 56735051 -44645470 + L1ME3A LINE L1 2 604 -5515 1567 115 29 131 chr15 56735051 56735365 -44645156 + AluJb SINE Alu 3 284 -18 732 312 142 77 chr15 56735365 56735650 -44644871 + L1ME3A LINE L1 604 869 -5250 478 292 78 42 chr15 56735666 56736420 -44644101 + L1ME3A LINE L1 925 1725 -4585 458 183 0 0 chr15 56736498 56736569 -44643952 + FLAM_A SINE Alu 47 117 -25 27 49 0 0 chr15 56736580 56736621 -44643900 + AT_rich Low_complexity Low_complexity 1 41 0 344 262 52 113 chr15 56736700 56736940 -44643581 + L1ME3A LINE L1 1877 2091 -4038 2259 76 3 0 chr15 56736940 56737228 -44643293 + AluY SINE Alu 1 289 -22 344 262 52 113 chr15 56737228 56737331 -44643190 + L1ME3A LINE L1 2091 2199 -3930 335 318 140 25 chr15 56737331 56737567 -44642954 + L1ME3A LINE L1 2413 2675 -3454 2033 250 73 15 chr15 56737567 56738159 -44642362 - MLT1E2 LTR MaLR 0 626 1 1160 265 80 24 chr15 56738219 56738931 -44641590 + L1ME3A LINE L1 2760 3511 -2618 393 301 134 23 chr15 56739011 56739579 -44640942 + L1ME3A LINE L1 3956 4586 -1543 425 283 50 24 chr15 56739591 56739888 -44640633 + L1ME3A LINE L1 4892 5196 -933 617 260 103 62 chr15 56739910 56740050 -44640471 + L1ME3A LINE L1 5411 5544 -609 3942 11 4 2 chr15 56740050 56740502 -44640019 + L1PA3 LINE L1 5698 6150 -5 617 260 103 62 chr15 56740502 56740594 -44639927 + L1ME3A LINE L1 5544 5631 -522 355 284 85 11 chr15 56740594 56740770 -44639751 + MER5A DNA MER1_type 1 189 0 617 260 103 62 chr15 56740770 56741039 -44639482 + L1ME3A LINE L1 5631 5934 -219 24 0 0 0 chr15 56741099 56741123 -44639398 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr15 56741247 56741295 -44639226 + AT_rich Low_complexity Low_complexity 1 48 0 1886 162 3 10 chr15 56741409 56741705 -44638816 + AluJb SINE Alu 5 298 -14 2072 206 34 8 chr15 56742314 56742813 -44637708 + Tigger6 DNA MER2_type 1086 1597 0 572 286 123 22 chr15 56743478 56743754 -44636767 - MLT1K LTR MaLR -40 548 245 2225 93 3 3 chr15 56743760 56744050 -44636471 + AluSq SINE Alu 3 292 -21 1222 105 6 0 chr15 56744050 56744221 -44636300 + AluSg/x SINE Alu 135 306 -6 248 318 151 40 chr15 56744450 56744702 -44635819 - L3 LINE CR1 -4 1573 1294 459 200 0 100 chr15 56744997 56745157 -44635364 + MER69 DNA AcHobo 2383 2526 0 218 380 29 24 chr15 56745236 56745444 -44635077 - L3 LINE CR1 -471 1106 898 2451 85 3 0 chr15 56745780 56746087 -44634434 - AluSp SINE Alu -5 308 1 406 339 44 0 chr15 56746391 56746574 -44633947 + MER117 DNA MER1_type 1 191 -6 319 286 14 79 chr15 56747105 56747245 -44633276 + L2 LINE L2 3142 3272 0 853 143 0 0 chr15 56747402 56747528 -44632993 + FLAM_C SINE Alu 2 127 -6 1656 196 3 20 chr15 56747537 56747838 -44632683 + AluJo SINE Alu 1 296 -16 296 310 26 17 chr15 56747894 56748010 -44632511 + MIR SINE MIR 100 216 -46 471 329 7 0 chr15 56748032 56748175 -44632346 + MIR3 SINE MIR 41 184 -24 321 286 121 62 chr15 56849464 56849688 -44530833 - L1M2a LINE L1 -6369 799 563 310 313 26 31 chr15 56851200 56851395 -44529126 - L1ME LINE L1 -296 5825 5632 253 259 69 61 chr15 56852088 56852219 -44528302 - MIR SINE MIR -57 205 74 663 205 0 0 chr15 56852305 56852422 -44528099 - FLAM_C SINE Alu -16 117 1 356 209 0 15 chr15 56852731 56852798 -44527723 + L2 LINE L2 2678 2743 -571 3004 215 73 44 chr15 56852798 56853669 -44526852 + L1ME1 LINE L1 4606 5450 -884 2355 88 10 0 chr15 56853669 56853966 -44526555 + AluSq SINE Alu 1 300 -13 3004 215 73 44 chr15 56853966 56854602 -44525919 + L1ME1 LINE L1 5450 6333 -1 301 256 137 58 chr15 56854604 56854867 -44525654 + L2 LINE L2 2741 3055 -258 314 241 35 35 chr15 56854882 56854969 -44525552 + MIR3 SINE MIR 115 201 -7 216 0 0 0 chr15 56855135 56855159 -44525362 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2129 108 3 0 chr15 56855162 56855448 -44525073 - AluSp SINE Alu -26 287 1 8214 49 9 1 chr15 56858261 56860075 -44520446 - L1PA5 LINE L1 -3 6151 4329 1910 103 6 29 chr15 56860228 56860539 -44519982 + AluY SINE Alu 1 304 -7 350 286 89 33 chr15 56860540 56860941 -44519580 + L1MEd LINE L1 1378 1839 -4768 333 293 33 88 chr15 56860956 56861137 -44519384 + L1MEd LINE L1 1732 1902 -4524 835 86 86 0 chr15 56861292 56861420 -44519101 + MER85 DNA T2_type 1 139 0 1826 199 25 87 chr15 56861959 56862674 -44517847 + L1MA4 LINE L1 5515 6185 -115 44 0 0 0 chr15 56862709 56862753 -44517768 + AT_rich Low_complexity Low_complexity 1 44 0 494 265 92 114 chr15 56862802 56863214 -44517307 + HAL1 LINE L1 1200 1602 -905 978 242 99 65 chr15 56863233 56863679 -44516842 + MLT1D LTR MaLR 12 472 -33 1993 171 0 0 chr15 56864009 56864314 -44516207 - AluJb SINE Alu -5 307 3 41 0 0 0 chr15 56864870 56864911 -44515610 + AT_rich Low_complexity Low_complexity 1 41 0 205 203 43 43 chr15 56866564 56866633 -44513888 + MIR SINE MIR 100 168 -94 393 209 0 11 chr15 56866637 56866728 -44513793 + MER20 DNA MER1_type 2 91 -128 700 153 24 0 chr15 56866887 56867011 -44513510 + MER20 DNA MER1_type 93 219 0 27 29 0 0 chr15 56867592 56867626 -44512895 + AT_rich Low_complexity Low_complexity 1 34 0 1088 216 100 74 chr15 56867662 56868163 -44512358 + LTR33A LTR ERVL 2 515 -8 268 305 0 0 chr15 56868286 56868345 -44512176 - L2 LINE L2 0 3313 3255 2393 80 0 19 chr15 56870435 56870748 -44509773 - AluY SINE Alu -4 307 1 2085 117 7 0 chr15 56870848 56871139 -44509382 - AluY SINE Alu -18 293 1 4927 248 114 40 chr15 56872069 56874571 -44505950 + L1ME1 LINE L1 148 3038 -3177 1887 169 0 0 chr15 56874571 56874872 -44505649 + AluSx SINE Alu 1 301 -11 4927 248 114 40 chr15 56874872 56876496 -44504025 + L1ME1 LINE L1 3038 4541 -1674 1401 168 7 92 chr15 56876579 56876883 -44503638 + AluJb SINE Alu 1 278 -34 490 165 0 17 chr15 56876883 56876998 -44503523 + GA-rich Low_complexity Low_complexity 4 116 0 1652 218 147 17 chr15 56876998 56877428 -44503093 + L1ME1 LINE L1 4545 5086 -1129 414 0 0 0 chr15 56877428 56877474 -44503047 + (CA)n Simple_repeat Simple_repeat 1 46 0 1652 218 147 17 chr15 56877474 56877682 -44502839 + L1ME1 LINE L1 5086 5266 -949 1820 172 0 7 chr15 56877690 56877987 -44502534 + AluJb SINE Alu 15 309 -3 189 0 0 0 chr15 56877994 56878015 -44502506 + (GA)n Simple_repeat Simple_repeat 2 22 0 1321 209 26 17 chr15 56878015 56878090 -44502431 + L1ME1 LINE L1 5782 5855 -380 2183 133 98 20 chr15 56878090 56878487 -44502034 - MSTA LTR MaLR 0 428 1 1321 209 26 17 chr15 56878487 56878836 -44501685 + L1ME1 LINE L1 5855 6230 -5 185 62 0 31 chr15 56878983 56879015 -44501506 + (CAGC)n Simple_repeat Simple_repeat 4 34 0 691 261 68 11 chr15 56879114 56879290 -44501231 - MIR SINE MIR -43 219 34 1128 189 50 43 chr15 56879293 56879615 -44500906 + MER33 DNA MER1_type 1 324 0 2259 107 3 25 chr15 56879786 56880105 -44500416 + AluSq SINE Alu 1 312 -1 314 308 30 23 chr15 56880120 56880253 -44500268 + MIR SINE MIR 27 160 -102 1194 126 57 34 chr15 56880253 56880516 -44500005 - Charlie1 DNA MER1_type -59 2702 2434 271 253 25 13 chr15 56880856 56880935 -44499586 + GA-rich Low_complexity Low_complexity 3 82 0 1927 143 37 9 chr15 56881206 56881527 -44498994 + MER44D DNA MER2_type 10 609 0 236 216 20 0 chr15 56881604 56881655 -44498866 - MLT1K LTR MaLR -37 551 500 183 204 0 0 chr15 56881679 56881728 -44498793 + CT-rich Low_complexity Low_complexity 1 49 0 285 314 24 65 chr15 56883175 56883344 -44497177 - MIR SINE MIR -66 196 35 319 333 57 14 chr15 56883366 56883507 -44497014 - MER5A DNA MER1_type -3 186 40 943 249 46 0 chr15 56883614 56883831 -44496690 + MIR SINE MIR 12 238 -24 303 271 147 16 chr15 56885336 56885465 -44495056 - MIR SINE MIR -113 149 4 2012 127 0 7 chr15 56885801 56886077 -44494444 - AluSx SINE Alu -37 275 2 2301 83 3 13 chr15 56886485 56886786 -44493735 - AluSx SINE Alu -14 298 1 237 65 0 0 chr15 56887184 56887215 -44493306 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1534 232 128 66 chr15 56887215 56887843 -44492678 + MER21B LTR ERV1 22 794 -137 4299 125 3 22 chr15 56887857 56888504 -44492017 + MER41B LTR ERV1 1 635 0 387 289 103 43 chr15 56888639 56888989 -44491532 - MLT1K LTR MaLR -24 564 194 1565 200 49 15 chr15 56889615 56889871 -44490650 - MER58B DNA MER1_type -2084 336 65 2158 125 0 3 chr15 56889871 56890167 -44490354 + AluSg SINE Alu 1 295 -15 1565 200 49 15 chr15 56890167 56890235 -44490286 - MER58B DNA MER1_type -2355 65 1 383 300 171 0 chr15 56890721 56890861 -44489660 + MLT1K LTR MaLR 116 279 -309 338 156 0 47 chr15 56890842 56890906 -44489615 + MLT1K LTR MaLR 524 584 -4 * 3484 140 39 19 chr15 56891584 56892175 -44488346 + LTR26 LTR ERV1 1 603 0 199 333 36 80 chr15 56892412 56892550 -44487971 + L2 LINE L2 3133 3264 -8 21 0 0 0 chr15 56892643 56892664 -44487857 + AT_rich Low_complexity Low_complexity 1 21 0 909 176 18 18 chr15 56892670 56892835 -44487686 - AluJo SINE Alu -25 287 123 2306 100 3 0 chr15 56892838 56893137 -44487384 + AluSq SINE Alu 1 300 -13 2439 79 0 0 chr15 56893843 56894133 -44486388 + AluSg SINE Alu 1 290 -20 574 237 0 20 chr15 56894577 56894729 -44485792 + MIR SINE MIR 72 220 -42 2202 102 3 0 chr15 56894999 56895284 -44485237 - AluSg SINE Alu -24 286 1 252 270 0 14 chr15 56895934 56896008 -44484513 + MIR3 SINE MIR 136 208 0 268 291 93 17 chr15 56896182 56896354 -44484167 + L1ME LINE L1 5683 5867 -254 24 0 0 0 chr15 56898234 56898258 -44482263 + AT_rich Low_complexity Low_complexity 1 24 0 195 129 0 0 chr15 56899999 56900030 -44480491 + (T)n Simple_repeat Simple_repeat 1 31 0 183 80 0 0 chr15 56902724 56902749 -44477772 + (GGA)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr15 56903358 56903379 -44477142 + AT_rich Low_complexity Low_complexity 1 21 0 243 229 0 0 chr15 56903880 56903941 -44476580 + (CAT)n Simple_repeat Simple_repeat 2 62 0 219 36 0 0 chr15 56904269 56904297 -44476224 + (CA)n Simple_repeat Simple_repeat 1 28 0 242 295 0 54 chr15 56906393 56906522 -44473999 + CT-rich Low_complexity Low_complexity 3 124 0 201 108 0 0 chr15 56907401 56907438 -44473083 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 330 153 0 0 chr15 56909418 56909477 -44471044 + CT-rich Low_complexity Low_complexity 2 60 0 240 324 19 19 chr15 56909921 56910029 -44470492 + CT-rich Low_complexity Low_complexity 2 109 0 263 262 82 16 chr15 56912761 56912883 -44467638 - MIR SINE MIR -56 206 77 544 290 182 34 chr15 56912937 56913382 -44467139 - L3 LINE CR1 -154 1423 913 218 193 18 0 chr15 56913398 56913455 -44467066 + CT-rich Low_complexity Low_complexity 2 59 0 1557 146 77 56 chr15 56913455 56913742 -44466779 - AluSx SINE Alu -15 297 5 474 281 67 29 chr15 56914568 56914778 -44465743 + MIR SINE MIR 18 235 -27 2069 145 7 0 chr15 56914878 56915182 -44465339 + AluSx SINE Alu 1 306 -6 386 180 22 11 chr15 56915234 56915323 -44465198 - MIR SINE MIR -95 167 78 277 349 75 27 chr15 56916633 56916779 -44463742 + MIR SINE MIR 37 189 -73 846 130 0 43 chr15 56916870 56917008 -44463513 - FLAM_C SINE Alu 0 133 2 236 269 117 21 chr15 56917103 56917248 -44463273 + MIR3 SINE MIR 41 199 -9 358 261 30 45 chr15 56917416 56917550 -44462971 - MIR SINE MIR -70 192 61 420 246 84 14 chr15 56917614 56917756 -44462765 + L2 LINE L2 2564 2715 -599 495 143 0 0 chr15 56917757 56917827 -44462694 + AluS SINE Alu 2 71 -242 1187 155 77 10 chr15 56917847 56918054 -44462467 - MSTB LTR MaLR -205 221 1 867 127 0 0 chr15 56918344 56918462 -44462059 + AluSq/x SINE Alu 1 118 -194 182 36 0 36 chr15 56918465 56918493 -44462028 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 427 263 0 0 chr15 56918651 56918757 -44461764 + MER5A DNA MER1_type 4 109 -80 2389 55 17 0 chr15 56918945 56919234 -44461287 + AluY SINE Alu 2 295 -16 302 328 68 34 chr15 56919299 56919476 -44461045 + MER5A DNA MER1_type 7 189 0 619 297 117 8 chr15 56919551 56919807 -44460714 + MLT1K LTR MaLR 31 314 -274 1244 186 0 18 chr15 56920001 56920222 -44460299 + AluSg/x SINE Alu 85 301 -9 234 0 0 0 chr15 56920299 56920325 -44460196 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1824 156 0 0 chr15 56920328 56920598 -44459923 - AluJo SINE Alu -30 282 13 243 227 0 0 chr15 56920610 56920654 -44459867 + MER103 DNA DNA 74 117 -49 251 313 122 8 chr15 56920758 56920889 -44459632 - MIR SINE MIR -50 212 67 325 288 43 29 chr15 56921581 56921720 -44458801 + MIR SINE MIR 51 191 -71 211 155 0 35 chr15 56921792 56921850 -44458671 + (CTA)n Simple_repeat Simple_repeat 1 56 0 1221 118 20 5 chr15 56924170 56924365 -44456156 + L1MD3 LINE L1 7790 7987 -8 368 229 57 9 chr15 56924510 56924615 -44455906 + MIR SINE MIR 42 151 -57 1331 103 16 0 chr15 56924662 56924856 -44455665 - L1P LINE L1 -1316 4830 4634 2724 71 24 5 chr15 56924856 56925233 -44455288 + L1PA8 LINE L1 5788 6172 0 319 291 97 23 chr15 56925351 56925526 -44454995 - MIR3 SINE MIR -5 203 16 1724 93 0 0 chr15 56925778 56925994 -44454527 + AluY SINE Alu 83 298 -13 2209 121 0 6 chr15 56927273 56927617 -44452904 - AluSq SINE Alu 0 342 1 426 173 0 0 chr15 56929885 56929960 -44450561 + MER5A DNA MER1_type 4 78 -111 239 299 0 0 chr15 56929960 56930027 -44450494 + (CA)n Simple_repeat Simple_repeat 1 67 0 265 274 0 0 chr15 56930090 56930152 -44450369 + MER5A DNA MER1_type 128 189 0 1069 216 113 0 chr15 56931688 56931980 -44448541 - MER58B DNA MER1_type -15 326 2 1599 181 20 7 chr15 56932031 56932323 -44448198 + AluSx SINE Alu 2 297 -15 180 97 0 0 chr15 56935113 56935144 -44445377 + (CA)n Simple_repeat Simple_repeat 1 31 0 1815 163 0 10 chr15 56935524 56935831 -44444690 + AluJb SINE Alu 1 304 -8 288 299 68 26 chr15 56935831 56936058 -44444463 + L1ME LINE L1 5595 5834 -287 240 245 20 10 chr15 56936064 56936162 -44444359 + (TA)n Simple_repeat Simple_repeat 1 99 0 2212 117 0 3 chr15 56937752 56938052 -44442469 + AluSx SINE Alu 1 299 -13 21 36 0 0 chr15 56938153 56938181 -44442340 + AT_rich Low_complexity Low_complexity 1 28 0 1050 273 48 35 chr15 56939508 56939962 -44440559 + MLT1K LTR MaLR 117 576 -12 200 318 111 0 chr15 56940152 56940215 -44440306 + L2 LINE L2 3151 3220 -52 419 274 211 5 chr15 56940356 56940546 -44439975 - LTR16C LTR ERVL 0 491 263 323 300 11 11 chr15 56941036 56941126 -44439395 + L2 LINE L2 3200 3289 -24 473 284 64 5 chr15 56941354 56941558 -44438963 + L1MC4a LINE L1 5695 5910 -1898 192 179 0 0 chr15 56941753 56941792 -44438729 + (TGGA)n Simple_repeat Simple_repeat 2 40 0 1809 168 3 3 chr15 56941956 56942260 -44438261 + AluJo SINE Alu 1 304 -8 342 315 9 18 chr15 56942346 56942457 -44438064 - MIR SINE MIR -124 138 29 750 180 12 24 chr15 56944575 56944742 -44435779 + MER103 DNA DNA 2 166 0 2796 198 37 65 chr15 56945274 56947202 -44433319 + L1ME1 LINE L1 4252 6161 -5 265 120 40 180 chr15 56947883 56947983 -44432538 + L1MB7 LINE L1 6099 6184 0 494 309 40 17 chr15 56948104 56948487 -44432034 + L1 LINE L1 3536 3925 -2221 248 204 0 0 chr15 56948538 56948587 -44431934 + MSTB1 LTR MaLR 5 53 -379 1452 186 19 38 chr15 56948588 56948906 -44431615 + AluJo SINE Alu 1 312 0 277 93 37 19 chr15 56948907 56948961 -44431560 + GA-rich Low_complexity Low_complexity 2 56 0 1915 153 50 24 chr15 56948963 56949341 -44431180 + MSTB1 LTR MaLR 45 432 0 267 325 43 37 chr15 56949596 56949759 -44430762 + MIR3 SINE MIR 36 199 -9 198 0 0 0 chr15 56949877 56949899 -44430622 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 2029 120 67 0 chr15 56949988 56950271 -44430250 + AluSq SINE Alu 1 302 -11 1631 181 48 17 chr15 56950456 56950810 -44429711 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr15 56951920 56951941 -44428580 + AT_rich Low_complexity Low_complexity 1 21 0 224 296 14 0 chr15 56952005 56952076 -44428445 - MIR SINE MIR 0 262 191 1738 242 10 37 chr15 56952078 56952570 -44427951 - MLT2B1 LTR ERVL -41 479 1 417 285 125 23 chr15 56952805 56953236 -44427285 + L1MC/D LINE L1 5337 5811 -1997 980 229 18 9 chr15 56953449 56953667 -44426854 + MER69 DNA AcHobo 3 222 -2304 479 241 31 75 chr15 56953777 56954005 -44426516 + MER46C DNA MER2_type 2 219 -119 37 23 0 0 chr15 56954225 56954269 -44426252 + AT_rich Low_complexity Low_complexity 1 44 0 240 337 17 17 chr15 56954688 56954869 -44425652 + L1M4 LINE L1 5406 5586 -588 180 125 0 0 chr15 56955150 56955182 -44425339 + (TAA)n Simple_repeat Simple_repeat 2 33 0 343 233 62 16 chr15 56955357 56955486 -44425035 + L1 LINE L1 3995 4129 -2017 697 249 42 5 chr15 56955491 56955680 -44424841 + MLT1F LTR MaLR 345 540 -2 1394 230 46 9 chr15 56955700 56956134 -44424387 + L1 LINE L1 4261 4710 -1436 1729 125 28 41 chr15 56956148 56956467 -44424054 + MER44D DNA MER2_type 1 585 -24 589 296 26 0 chr15 56956504 56956734 -44423787 + L1 LINE L1 4711 4946 -1200 397 184 10 19 chr15 56956778 56956881 -44423640 + L1ME1 LINE L1 5231 5332 -814 3525 270 96 15 chr15 56956883 56958972 -44421549 + L1M3d LINE L1 6 1925 -4045 2211 126 0 0 chr15 56958976 56959269 -44421252 + AluSx SINE Alu 4 296 -16 1067 192 8 23 chr15 56959321 56959581 -44420940 + L1 LINE L1 5127 5382 -764 509 133 7 126 chr15 56959581 56959724 -44420797 + L1MB1 LINE L1 5307 5432 -736 * 1104 213 0 4 chr15 56959714 56959977 -44420544 + L1ME2 LINE L1 5657 5918 -246 1982 161 0 0 chr15 56959993 56960284 -44420237 + AluSx SINE Alu 3 293 -19 3166 175 29 3 chr15 56960315 56960931 -44419590 + L1MB1 LINE L1 5496 6127 -41 1370 201 46 28 chr15 56960931 56961214 -44419307 + AluJb SINE Alu 1 288 -24 259 55 96 27 chr15 56961220 56961293 -44419228 + (TTTAA)n Simple_repeat Simple_repeat 5 82 0 2300 205 16 44 chr15 56961344 56961461 -44419060 + L1ME1 LINE L1 5318 5437 -729 1805 190 3 0 chr15 56961461 56961771 -44418750 + AluJo SINE Alu 1 311 -1 2300 205 16 44 chr15 56961771 56962268 -44418253 + L1ME1 LINE L1 5437 5915 -251 24 32 0 0 chr15 56962275 56962306 -44418215 + AT_rich Low_complexity Low_complexity 1 31 0 403 299 10 44 chr15 56962306 56962510 -44418011 + L1ME1 LINE L1 5915 6111 -55 435 168 0 74 chr15 56962513 56962608 -44417913 + THE1B LTR MaLR 194 281 -83 2326 106 0 13 chr15 56962851 56963163 -44417358 + AluY SINE Alu 1 308 -3 677 202 0 8 chr15 56964735 56964854 -44415667 + FLAM_A SINE Alu 4 121 -12 2001 125 0 0 chr15 56965297 56965584 -44414937 + AluSc SINE Alu 14 300 -9 1529 185 62 0 chr15 56965606 56965898 -44414623 + AluJb SINE Alu 1 310 -2 246 200 93 0 chr15 56966636 56966711 -44413810 + L1MB7 LINE L1 6103 6184 0 279 239 26 35 chr15 56966740 56966853 -44413668 + L1MEd LINE L1 965 1076 -5043 1409 95 0 43 chr15 56966860 56967092 -44413429 + AluY SINE Alu 1 222 -89 1150 193 3 77 chr15 56967709 56968020 -44412501 + MLT1B LTR MaLR 98 385 -5 1808 157 102 105 chr15 56968435 56968517 -44412004 - MLT2B1 LTR ERVL 0 520 439 195 42 0 0 chr15 56968517 56968541 -44411980 + (TG)n Simple_repeat Simple_repeat 1 24 0 204 40 0 0 chr15 56968544 56968569 -44411952 + (GA)n Simple_repeat Simple_repeat 2 26 0 1808 157 102 105 chr15 56968569 56969004 -44411517 - MLT2B1 LTR ERVL -83 437 1 2270 122 0 3 chr15 56969056 56969360 -44411161 + AluSx SINE Alu 1 303 -9 2599 118 62 5 chr15 56969721 56970126 -44410395 + MSTA LTR MaLR 1 428 0 1729 285 49 31 chr15 56970266 56970915 -44409606 - MLT2F LTR ERVL -2 661 1 24 0 0 0 chr15 56971644 56971668 -44408853 + AT_rich Low_complexity Low_complexity 1 24 0 3772 150 25 4 chr15 56971701 56972393 -44408128 + Tigger3b DNA MER2_type 2 707 -524 419 141 8 164 chr15 56972397 56972525 -44407996 - FLAM_A SINE Alu -6 136 29 1514 95 23 53 chr15 56972527 56972714 -44407807 + Tigger3b DNA MER2_type 708 886 -2142 1836 118 44 4 chr15 56972714 56972984 -44407537 - AluSc SINE Alu -28 281 1 1514 95 23 53 chr15 56972984 56973057 -44407464 + Tigger3b DNA MER2_type 886 960 -271 1691 108 119 0 chr15 56973057 56973335 -44407186 - MER1B DNA MER1_type 0 339 29 1098 117 22 22 chr15 56973343 56973523 -44406998 + Tigger3b DNA MER2_type 1062 1241 0 355 271 25 0 chr15 56973725 56973843 -44406678 - L1MC4a LINE L1 -1922 5886 5766 396 0 0 0 chr15 56974028 56974072 -44406449 + (CA)n Simple_repeat Simple_repeat 2 45 0 333 0 0 0 chr15 56974942 56974979 -44405542 + (TG)n Simple_repeat Simple_repeat 2 38 0 782 246 0 6 chr15 56975122 56975305 -44405216 - MIR SINE MIR -1 261 80 1792 80 4 29 chr15 56976496 56976770 -44403751 - L1MA1 LINE L1 0 6302 6036 371 266 0 44 chr15 56976907 56977020 -44403501 + L2 LINE L2 2981 3088 -184 21 0 0 0 chr15 56977836 56977857 -44402664 + AT_rich Low_complexity Low_complexity 1 21 0 207 245 0 0 chr15 56979198 56979247 -44401274 - L2 LINE L2 -17 3296 3248 2496 69 0 0 chr15 56979284 56979590 -44400931 + AluY SINE Alu 1 306 -5 546 280 0 8 chr15 56980265 56980390 -44400131 - MIR SINE MIR -114 148 25 472 265 85 47 chr15 56980334 56980550 -44399971 + MIR SINE MIR 7 230 -32 * 228 363 82 0 chr15 56980909 56981044 -44399477 - MIR SINE MIR -71 191 46 272 325 58 25 chr15 56981122 56981242 -44399279 + MIR3 SINE MIR 33 156 -52 221 0 35 0 chr15 56981290 56981319 -44399202 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2010 124 62 0 chr15 56981622 56981913 -44398608 - AluSq SINE Alu -4 309 1 288 193 273 11 chr15 56982274 56982362 -44398159 + L2 LINE L2 3193 3303 -10 470 294 111 0 chr15 56982528 56982681 -44397840 + MIR SINE MIR 23 192 -70 11707 166 50 44 chr15 56982760 56985364 -44395157 + Charlie5 DNA MER1_type 2 2621 0 2517 224 88 78 chr15 56985582 56986888 -44393633 - HAL1 LINE L1 0 2507 1062 983 207 65 121 chr15 56986891 56987278 -44393243 + MLT1A1 LTR MaLR 1 365 0 2430 66 0 10 chr15 56987586 56987889 -44392632 + AluY SINE Alu 1 300 -11 1143 289 128 24 chr15 56989942 56990395 -44390126 - HAL1 LINE L1 -1826 681 182 352 218 128 15 chr15 56990396 56990529 -44389992 - LTR16C LTR ERVL 0 491 344 262 222 14 132 chr15 56990746 56990890 -44389631 - L1M4 LINE L1 -1563 4583 4457 660 250 59 51 chr15 56990915 56991276 -44389245 - L1MCc LINE L1 -4887 1536 1280 909 156 0 22 chr15 56991276 56991411 -44389110 + FLAM_C SINE Alu 2 133 0 660 250 59 51 chr15 56991411 56991514 -44389007 - L1MCc LINE L1 -5143 1280 1179 293 242 32 11 chr15 56991912 56991994 -44388527 - HAL1 LINE L1 -2323 184 98 1493 156 0 0 chr15 56991994 56992225 -44388296 - AluSg/x SINE Alu 0 312 82 293 242 32 11 chr15 56992225 56992237 -44388284 - HAL1 LINE L1 -2409 98 88 192 111 0 0 chr15 56992731 56992767 -44387754 + (A)n Simple_repeat Simple_repeat 1 36 0 281 331 73 8 chr15 56993985 56994109 -44386412 - L2 LINE L2 -2 3270 3139 731 299 15 0 chr15 56994200 56994397 -44386124 + MER63A DNA MER1_type 9 208 -2 2278 95 0 0 chr15 56994449 56994758 -44385763 + AluSx SINE Alu 1 309 0 735 262 114 73 chr15 56994963 56995306 -44385215 + MLT1H LTR MaLR 1 357 -192 341 183 12 37 chr15 56995315 56995397 -44385124 + MLT1H LTR MaLR 476 555 0 2830 153 25 5 chr15 56995687 56995724 -44384797 - MLT2B2 LTR ERVL -6 548 513 601 82 18 18 chr15 56995724 56995834 -44384687 + (TAGA)n Simple_repeat Simple_repeat 3 112 0 2830 153 25 5 chr15 56995834 56996272 -44384249 - MLT2B2 LTR ERVL -41 513 7 1878 221 62 61 chr15 56997116 56997863 -44382658 + LTR8A LTR ERV1 1 727 0 2479 174 75 22 chr15 56998514 56999024 -44381497 - MLT1F LTR MaLR -5 537 1 439 260 96 14 chr15 56999030 56999249 -44381272 - L1ME4a LINE L1 -191 5930 5694 2479 174 75 22 chr15 56999858 57000368 -44380153 - MLT1F LTR MaLR -5 537 1 442 265 96 14 chr15 57000374 57000593 -44379928 - L1ME4a LINE L1 -191 5930 5694 760 172 191 6 chr15 57002424 57002581 -44377940 - MER20 DNA MER1_type -28 191 6 2394 84 0 7 chr15 57002648 57002956 -44377565 - AluY SINE Alu -5 306 1 377 154 0 13 chr15 57005070 57005148 -44375373 + (TAGA)n Simple_repeat Simple_repeat 3 79 0 2142 206 49 24 chr15 57005148 57005614 -44374907 - MLT2B1 LTR ERVL -42 478 1 867 167 8 0 chr15 57006479 57006611 -44373910 + FLAM_C SINE Alu 1 133 0 2395 86 0 3 chr15 57007484 57007785 -44372736 + AluY SINE Alu 1 300 -11 247 241 121 12 chr15 57007839 57007922 -44372599 - MIR SINE MIR -71 191 100 2327 101 0 0 chr15 57008159 57008465 -44372056 + AluSx SINE Alu 1 306 -6 222 174 0 0 chr15 57009213 57009259 -44371262 + (TATATG)n Simple_repeat Simple_repeat 6 51 0 1772 178 0 28 chr15 57009263 57009583 -44370938 - AluJb SINE Alu 0 312 2 493 280 30 0 chr15 57009752 57009884 -44370637 - MIR3 SINE MIR -3 205 70 324 289 13 0 chr15 57010085 57010161 -44370360 + L2 LINE L2 3188 3264 -8 192 246 158 44 chr15 57010233 57010347 -44370174 - MIR3 SINE MIR -1 207 81 2100 154 44 26 chr15 57011137 57011520 -44369001 - MLT1B LTR MaLR 0 390 1 22 0 0 0 chr15 57012572 57012594 -44367927 + AT_rich Low_complexity Low_complexity 1 22 0 2402 78 0 3 chr15 57016243 57016551 -44363970 - AluY SINE Alu -4 307 1 460 244 77 89 chr15 57017413 57017454 -44363067 - MER5B DNA MER1_type -4 174 134 2650 33 0 0 chr15 57017454 57017755 -44362766 + AluY SINE Alu 1 301 -10 460 244 77 89 chr15 57017755 57017881 -44362640 - MER5B DNA MER1_type -44 134 9 181 277 21 0 chr15 57018216 57018263 -44362258 - L2 LINE L2 -219 3053 3006 282 271 0 0 chr15 57018422 57018481 -44362040 - MIR SINE MIR 0 262 204 1902 120 33 11 chr15 57018493 57018794 -44361727 - AluSq SINE Alu 0 307 1 611 231 26 19 chr15 57018794 57018950 -44361571 - MIR SINE MIR -36 226 70 21 0 0 0 chr15 57020247 57020268 -44360253 + AT_rich Low_complexity Low_complexity 1 21 0 2217 98 3 7 chr15 57021952 57022249 -44358272 - AluSq SINE Alu -17 296 1 448 254 88 46 chr15 57023169 57023371 -44357150 - MIR SINE MIR -9 253 31 198 0 0 0 chr15 57023725 57023747 -44356774 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 276 30 0 0 chr15 57023746 57023779 -44356742 + (CA)n Simple_repeat Simple_repeat 1 33 0 1809 184 0 29 chr15 57023943 57024259 -44356262 + AluJb SINE Alu 1 307 -5 222 118 0 0 chr15 57024809 57024843 -44355678 + (CA)n Simple_repeat Simple_repeat 1 34 0 180 0 0 0 chr15 57024842 57024862 -44355659 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 228 372 68 34 chr15 57025283 57025469 -44355052 - MIR3 SINE MIR -62 146 1 2536 11 0 0 chr15 57026776 57027049 -44353472 + AluYa5 SINE Alu 36 308 -3 498 240 155 112 chr15 57027560 57028097 -44352424 - MER34 LTR ERV1 0 585 26 367 343 37 0 chr15 57028473 57028581 -44351940 - L2 LINE L2 -14 3258 3147 219 257 59 30 chr15 57028858 57028959 -44351562 - MIR SINE MIR -146 116 13 183 338 27 40 chr15 57029896 57029970 -44350551 - L3b LINE CR1 -13 1570 1498 276 271 0 0 chr15 57030090 57030149 -44350372 - L2 LINE L2 -3 3269 3211 467 211 67 10 chr15 57030335 57030439 -44350082 + L2 LINE L2 3200 3309 -4 481 248 25 0 chr15 57030666 57030787 -44349734 + L1ME4a LINE L1 5989 6112 -9 33 0 0 0 chr15 57031236 57031269 -44349252 + AT_rich Low_complexity Low_complexity 1 33 0 359 268 36 82 chr15 57032024 57032218 -44348303 + MER5A DNA MER1_type 5 189 0 334 273 41 41 chr15 57032260 57032381 -44348140 + MIR SINE MIR 28 148 -114 1904 151 7 10 chr15 57032704 57033002 -44347519 - AluJb SINE Alu -15 297 1 275 0 0 28 chr15 57033013 57033049 -44347472 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 263 276 71 67 chr15 57033201 57033455 -44347066 - L2 LINE L2 -818 2496 2242 790 220 29 0 chr15 57033473 57033646 -44346875 - MER5B DNA MER1_type 0 178 1 1634 244 58 50 chr15 57033804 57034304 -44346217 - MLT1D LTR MaLR -1 504 1 3609 200 120 115 chr15 57034310 57035364 -44345157 - MLT1D-int LTR MaLR -16 1355 291 1636 181 54 4 chr15 57035364 57035641 -44344880 - AluJb SINE Alu -19 293 3 3609 200 120 115 chr15 57035641 57035931 -44344590 - MLT1D-int LTR MaLR -1080 291 4 32 0 0 0 chr15 57035990 57036022 -44344499 + AT_rich Low_complexity Low_complexity 1 32 0 185 309 0 0 chr15 57036160 57036215 -44344306 - MIR SINE MIR -85 123 69 207 343 67 38 chr15 57036391 57036496 -44344025 - L2 LINE L2 0 3313 3206 440 248 26 0 chr15 57036670 57036783 -44343738 - MIR SINE MIR -113 149 34 288 294 78 14 chr15 57036782 57036957 -44343564 - MIR SINE MIR -61 147 3 * 2295 84 0 10 chr15 57037314 57037624 -44342897 + AluY SINE Alu 1 307 -4 703 277 13 55 chr15 57037643 57037878 -44342643 + MIR SINE MIR 28 252 -10 1625 168 0 62 chr15 57037904 57038042 -44342479 + AluJb SINE Alu 13 125 -187 2199 104 0 3 chr15 57038042 57038339 -44342182 + AluSp SINE Alu 5 300 -13 1625 168 0 62 chr15 57038339 57038491 -44342030 + AluJb SINE Alu 125 285 -27 976 254 25 8 chr15 57038581 57038817 -44341704 - MIR SINE MIR 0 262 23 195 69 0 0 chr15 57039955 57039984 -44340537 + (A)n Simple_repeat Simple_repeat 1 29 0 1627 179 11 0 chr15 57040056 57040359 -44340162 - AluJo SINE Alu 0 306 1 329 225 188 0 chr15 57040388 57040468 -44340053 + MER81 DNA DNA 1 95 -19 180 254 104 0 chr15 57042480 57042547 -44337974 - MIR SINE MIR -72 190 117 268 328 84 61 chr15 57042589 57042934 -44337587 + L2 LINE L2 2400 2752 -562 1484 157 108 11 chr15 57042940 57043208 -44337313 + AluJb SINE Alu 12 305 -7 425 253 10 0 chr15 57043361 57043460 -44337061 - L2 LINE L2 -13 3300 3201 216 331 92 8 chr15 57043700 57043830 -44336691 + L2 LINE L2 3162 3302 -11 356 272 106 28 chr15 57043848 57044028 -44336493 - MIR SINE MIR -36 226 33 2190 123 83 14 chr15 57044226 57044577 -44335944 - THE1C LTR MaLR 0 375 1 267 292 0 0 chr15 57045639 57045710 -44334811 + (TGGA)n Simple_repeat Simple_repeat 1 71 0 2278 110 0 7 chr15 57046119 57046428 -44334093 + AluSc SINE Alu 1 307 -2 22 0 0 0 chr15 57046638 57046660 -44333861 + AT_rich Low_complexity Low_complexity 1 22 0 2580 58 0 0 chr15 57046662 57046970 -44333551 + AluY SINE Alu 2 309 -2 798 297 73 3 chr15 57047139 57047442 -44333079 + L2 LINE L2 2215 2538 -776 1805 158 0 3 chr15 57047447 57047760 -44332761 + AluJb SINE Alu 1 312 0 848 141 23 0 chr15 57047762 57047890 -44332631 + AluSq/x SINE Alu 6 136 -177 1084 220 40 99 chr15 57047890 57048444 -44332077 + L2 LINE L2 2674 3312 -1 233 218 0 18 chr15 57048444 57048499 -44332022 + GA-rich Low_complexity Low_complexity 1 54 0 186 43 0 0 chr15 57048662 57048685 -44331836 + (CA)n Simple_repeat Simple_repeat 2 24 0 696 232 115 44 chr15 57049175 57049337 -44331184 + L1ME3A LINE L1 3069 3218 -2928 2431 93 3 0 chr15 57049337 57049649 -44330872 + AluSq SINE Alu 1 313 0 696 232 115 44 chr15 57049649 57049733 -44330788 + L1ME3A LINE L1 3218 3295 -2851 2119 122 17 0 chr15 57049733 57050028 -44330493 + AluSx SINE Alu 1 300 -12 696 232 115 44 chr15 57050028 57050189 -44330332 + L1ME3A LINE L1 3295 3506 -2640 911 93 16 0 chr15 57050193 57050322 -44330199 + AluSg/x SINE Alu 172 302 -8 1516 287 83 29 chr15 57050325 57051342 -44329179 + L1ME3A LINE L1 3504 4464 -1698 398 0 65 0 chr15 57051342 57051404 -44329117 + (TA)n Simple_repeat Simple_repeat 2 67 0 1516 287 83 29 chr15 57051404 57052245 -44328276 + L1ME3A LINE L1 4464 5742 -420 444 258 36 113 chr15 57052277 57052552 -44327969 - MLT1J2 LTR MaLR -57 393 140 246 206 63 0 chr15 57052535 57052598 -44327923 - MLT1J1 LTR MaLR -341 105 39 * 652 199 59 89 chr15 57052648 57052884 -44327637 + L1ME3A LINE L1 5740 5968 -202 1356 190 0 4 chr15 57057099 57057352 -44323169 - L1MB3 LINE L1 0 6183 5932 534 302 36 26 chr15 57057671 57057863 -44322658 - MIR SINE MIR -41 221 28 198 298 0 0 chr15 57058192 57058239 -44322282 - MIR SINE MIR 0 262 216 500 76 0 13 chr15 57058547 57058626 -44321895 + (CA)n Simple_repeat Simple_repeat 1 78 0 689 289 52 20 chr15 57058798 57059047 -44321474 + MIR SINE MIR 6 262 0 336 242 34 34 chr15 57059085 57059234 -44321287 + L1MC5 LINE L1 7294 7442 -519 450 219 59 9 chr15 57059963 57060099 -44320422 + L1MC4 LINE L1 6862 7060 -802 330 270 69 42 chr15 57060104 57060293 -44320228 + L1MC5 LINE L1 6960 7153 -808 325 189 44 67 chr15 57060293 57060383 -44320138 + LTR48B LTR ERV1 1 88 -556 * 2114 205 18 20 chr15 57060370 57060819 -44319702 + MER39 LTR ERV1 260 707 0 275 239 56 0 chr15 57060819 57060922 -44319599 + L1MC5 LINE L1 7146 7213 -748 1982 138 18 0 chr15 57060925 57061046 -44319475 + AluJo SINE Alu 1 118 -197 183 42 0 0 chr15 57061046 57061070 -44319451 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1982 138 18 0 chr15 57061070 57061258 -44319263 + AluJo SINE Alu 118 315 0 324 254 55 109 chr15 57061452 57061498 -44319023 + L1MC5 LINE L1 7262 7309 -652 2197 136 0 0 chr15 57061498 57061799 -44318722 + AluSx SINE Alu 1 301 -11 324 254 55 109 chr15 57061799 57061972 -44318549 + L1MC5 LINE L1 7309 7469 -492 210 307 53 26 chr15 57062190 57062304 -44318217 - MIR SINE MIR -74 134 18 281 219 14 25 chr15 57062344 57062423 -44318098 + L1MC4 LINE L1 7505 7672 -370 1872 130 0 4 chr15 57063228 57063497 -44317024 + AluSx SINE Alu 25 292 -20 1558 138 53 11 chr15 57063497 57063779 -44316742 + L1MA4A LINE L1 6010 6303 0 981 147 0 0 chr15 57064332 57064502 -44316019 + (TCTA)n Simple_repeat Simple_repeat 3 172 0 263 238 0 48 chr15 57064638 57064701 -44315820 - L2 LINE L2 -6 3307 3248 399 21 0 0 chr15 57065215 57065263 -44315258 + (TG)n Simple_repeat Simple_repeat 1 48 0 286 275 108 8 chr15 57065519 57065639 -44314882 - MIR3 SINE MIR -40 168 37 317 256 142 3 chr15 57065985 57066172 -44314349 + MIR SINE MIR 2 261 -1 2194 115 0 3 chr15 57067412 57067699 -44312822 - AluSg SINE Alu -24 286 1 404 286 103 90 chr15 57068498 57068602 -44311919 + L2 LINE L2 3008 3109 -204 1863 152 22 0 chr15 57068602 57068900 -44311621 - AluSx SINE Alu 0 304 1 404 286 103 90 chr15 57068900 57069095 -44311426 + L2 LINE L2 3109 3312 -1 256 264 23 0 chr15 57069736 57069823 -44310698 - MER113 DNA MER1_type? -430 91 3 235 309 114 36 chr15 57069884 57070104 -44310417 - L2 LINE L2 0 3313 3077 513 204 34 7 chr15 57070105 57070407 -44310114 + GA-rich Low_complexity Low_complexity 1 310 0 2080 133 3 0 chr15 57070857 57071143 -44309378 - AluSx SINE Alu -25 287 1 363 281 65 70 chr15 57071728 57071810 -44308711 - MIR SINE MIR -73 189 108 2145 127 13 0 chr15 57071810 57072117 -44308404 + AluSp SINE Alu 2 312 -1 363 281 65 70 chr15 57072117 57072219 -44308302 - MIR SINE MIR -154 108 6 349 279 14 50 chr15 57072673 57072813 -44307708 + MIR SINE MIR 58 192 -70 357 235 71 58 chr15 57072911 57073090 -44307431 - MIR SINE MIR -53 209 30 279 306 14 21 chr15 57073142 57073277 -44307244 - L2 LINE L2 -410 2904 2769 2013 131 32 0 chr15 57073277 57073560 -44306961 + AluSg SINE Alu 1 292 -18 362 286 37 19 chr15 57074112 57074273 -44306248 + MIR SINE MIR 88 251 -11 25 0 0 0 chr15 57074453 57074478 -44306043 + AT_rich Low_complexity Low_complexity 1 25 0 198 71 0 0 chr15 57075407 57075435 -44305086 + (TTTTTA)n Simple_repeat Simple_repeat 4 31 0 195 277 0 0 chr15 57075959 57076006 -44304515 - L2 LINE L2 -4 3309 3263 410 230 50 10 chr15 57076017 57076117 -44304404 + MER5A DNA MER1_type 15 118 -71 448 230 95 92 chr15 57076880 57076969 -44303552 - L1ME4a LINE L1 -7 6114 6027 1668 176 10 36 chr15 57076969 57077270 -44303251 + AluJo SINE Alu 1 293 -19 448 230 95 92 chr15 57077270 57077580 -44302941 - L1ME4a LINE L1 -94 6027 5714 231 167 0 0 chr15 57078469 57078511 -44302010 + CT-rich Low_complexity Low_complexity 1 42 0 326 310 57 0 chr15 57078569 57078727 -44301794 - L1MC5 LINE L1 -519 7442 7276 529 228 133 25 chr15 57078822 57079118 -44301403 - L1MC4 LINE L1 -741 7220 6957 886 276 106 35 chr15 57079134 57079996 -44300525 - L1MC4 LINE L1 -891 6917 6076 1352 224 95 19 chr15 57080053 57080517 -44300004 - L1MEc LINE L1 -1866 4349 3851 2834 275 48 15 chr15 57081067 57082316 -44298205 - L1MEc LINE L1 -2345 3870 2581 588 256 102 50 chr15 57082407 57083176 -44297345 - L1MEc LINE L1 -3980 2416 1602 2063 138 3 0 chr15 57083223 57083520 -44297001 - AluSx SINE Alu -14 298 1 2042 128 20 0 chr15 57083596 57083893 -44296628 - AluSx SINE Alu -9 303 1 961 125 0 7 chr15 57083893 57084029 -44296492 - AluSq/x SINE Alu -177 135 1 391 304 145 7 chr15 57085511 57085649 -44294872 - L2 LINE L2 -1 3271 3115 183 42 0 0 chr15 57086971 57086995 -44293526 + (TGGGGG)n Simple_repeat Simple_repeat 6 29 0 1849 183 0 3 chr15 57087670 57087976 -44292545 - AluSx SINE Alu -7 305 1 2029 138 14 7 chr15 57088830 57089126 -44291395 - AluJb SINE Alu -13 299 2 797 238 41 6 chr15 57089681 57089853 -44290668 + MER5A DNA MER1_type 6 183 -6 577 284 30 24 chr15 57089882 57090077 -44290444 + MIR SINE MIR 5 194 -62 248 312 0 46 chr15 57090167 57090276 -44290245 + MIR SINE MIR 89 192 -70 2256 107 3 3 chr15 57090590 57090899 -44289622 + AluSc SINE Alu 1 309 0 489 325 24 0 chr15 57090991 57091160 -44289361 - MIR SINE MIR -17 245 73 613 184 26 0 chr15 57094211 57094325 -44286196 + L1PA10 LINE L1 6038 6154 -14 474 312 85 15 chr15 57094353 57094552 -44285969 + MIR SINE MIR 8 220 -42 2323 90 3 13 chr15 57095348 57095660 -44284861 + AluSc SINE Alu 1 309 0 316 200 144 11 chr15 57095863 57095953 -44284568 - L2 LINE L2 -96 3217 3116 271 180 0 0 chr15 57095956 57096006 -44284515 + MIR SINE MIR 73 122 -140 990 121 0 12 chr15 57096150 57096316 -44284205 - MER53 DNA DNA 0 189 26 2040 141 0 49 chr15 57096469 57096795 -44283726 + AluSx SINE Alu 1 310 -2 892 287 87 37 chr15 57097073 57097474 -44283047 - L2 LINE L2 0 3313 2893 1140 169 22 40 chr15 57098500 57098725 -44281796 - AluJb SINE Alu -10 302 82 418 303 45 17 chr15 57100372 57100550 -44279971 + MER5A DNA MER1_type 6 188 -1 536 179 66 20 chr15 57101489 57101640 -44278881 - ORSL DNA AcHobo -110 165 8 4177 97 16 3 chr15 57101640 57102248 -44278273 + L1MA3 LINE L1 5683 6298 -7 360 303 94 30 chr15 57102422 57102656 -44277865 - MIR SINE MIR -1 261 13 674 185 101 117 chr15 57102676 57102984 -44277537 - MER5C DNA MER1_type -6 318 16 2443 70 0 0 chr15 57103960 57104258 -44276263 + AluY SINE Alu 1 298 -13 436 285 97 6 chr15 57104764 57104929 -44275592 - MIR SINE MIR -40 222 43 2110 132 20 7 chr15 57105483 57105787 -44274734 + AluSq SINE Alu 6 313 0 1615 196 73 3 chr15 57106970 57107311 -44273210 - MLT1A1 LTR MaLR 0 365 1 32 57 0 0 chr15 57107697 57107750 -44272771 + AT_rich Low_complexity Low_complexity 1 53 0 1674 176 14 10 chr15 57107796 57108091 -44272430 - AluJb SINE Alu -16 296 1 7089 53 8 0 chr15 57110899 57111812 -44268709 + L1PA5 LINE L1 5227 6146 -8 24 0 0 0 chr15 57111812 57111836 -44268685 + AT_rich Low_complexity Low_complexity 1 24 0 572 248 200 5 chr15 57112157 57112367 -44268154 - MIR SINE MIR 0 262 12 951 283 89 63 chr15 57113267 57113960 -44266561 + L1ME2 LINE L1 123 797 -5322 1758 182 0 10 chr15 57113960 57114262 -44266259 + AluJb SINE Alu 1 299 -13 951 283 89 63 chr15 57114262 57114401 -44266120 + L1ME2 LINE L1 797 931 -5188 1642 185 57 66 chr15 57114401 57114872 -44265649 - MLT1C LTR MaLR 0 467 1 951 283 89 63 chr15 57114872 57115126 -44265395 + L1ME2 LINE L1 931 1238 -4881 2504 87 3 0 chr15 57115252 57115564 -44264957 - AluSq SINE Alu 0 313 1 441 263 56 26 chr15 57115582 57115814 -44264707 + L1ME3A LINE L1 5927 6165 -5 368 335 138 23 chr15 57115826 57116044 -44264477 + HAL1 LINE L1 1523 1765 -742 1180 162 8 174 chr15 57116469 57116820 -44263701 - AluJo SINE Alu -9 293 1 316 275 53 58 chr15 57116836 57117178 -44263343 + L1ME2 LINE L1 2196 2535 -3594 620 161 0 32 chr15 57118316 57118440 -44262081 + L1MD3 LINE L1 7876 7995 0 1062 224 54 4 chr15 57119078 57119337 -44261184 + L1ME2 LINE L1 5407 5678 -469 516 204 66 11 chr15 57119334 57119515 -44261006 - L1M4 LINE L1 -972 5174 4984 * 1226 222 45 48 chr15 57119517 57119899 -44260622 + L1ME2 LINE L1 5660 6016 -133 2181 113 0 0 chr15 57119899 57120192 -44260329 - AluSx SINE Alu -19 293 1 1226 222 45 48 chr15 57120192 57120326 -44260195 + L1ME2 LINE L1 6016 6149 0 23 33 0 0 chr15 57120816 57120846 -44259675 + AT_rich Low_complexity Low_complexity 1 30 0 240 111 0 0 chr15 57121760 57121796 -44258725 + (TA)n Simple_repeat Simple_repeat 2 37 0 200 350 161 15 chr15 57121884 57122021 -44258500 + L2 LINE L2 2826 2982 -290 626 226 87 33 chr15 57122032 57122305 -44258216 - LTR16C LTR ERVL -2 489 150 414 337 82 28 chr15 57122400 57122655 -44257866 + L2 LINE L2 2985 3253 -19 * 1044 278 70 78 chr15 57122653 57122945 -44257576 - L2 LINE L2 0 3313 3020 2050 140 22 0 chr15 57122945 57123301 -44257220 + L1MC1 LINE L1 5962 6325 -8 746 195 0 0 chr15 57123302 57123425 -44257096 + FLAM_C SINE Alu 2 124 -9 1044 278 70 78 chr15 57123425 57123644 -44256877 - L2 LINE L2 -292 3021 2804 275 336 86 7 chr15 57123932 57124072 -44256449 + MIR3 SINE MIR 50 200 -8 3464 136 9 15 chr15 57124547 57125077 -44255444 + MER1A DNA MER1_type 1 527 0 184 293 69 0 chr15 57125083 57125141 -44255380 - L2 LINE L2 -64 3208 3147 2508 59 9 3 chr15 57126192 57126515 -44254006 + L1PA5 LINE L1 5826 6150 -4 1140 194 5 37 chr15 57128079 57128134 -44252387 + AluJo SINE Alu 86 141 -171 1131 15 15 0 chr15 57128134 57128271 -44252250 + L1PA4 LINE L1 6016 6154 -1 1140 194 5 37 chr15 57128271 57128431 -44252090 + AluJo SINE Alu 141 294 -18 1914 161 0 3 chr15 57131120 57131419 -44249102 - AluJb SINE Alu -14 298 1 547 318 98 11 chr15 57131835 57132206 -44248315 + L2 LINE L2 2647 3059 -213 408 130 0 0 chr15 57133083 57133152 -44247369 + (GGA)n Simple_repeat Simple_repeat 3 71 0 405 289 113 14 chr15 57133740 57133882 -44246639 - L2 LINE L2 0 3272 3117 1061 69 25 19 chr15 57134068 57134228 -44246293 - L1PA13 LINE L1 -3 6160 6000 522 341 134 3 chr15 57134278 57134583 -44245938 - L2 LINE L2 -339 2975 2631 1562 176 0 8 chr15 57134688 57134943 -44245578 - AluSx SINE Alu -55 257 5 23 33 0 0 chr15 57135144 57135174 -44245347 + AT_rich Low_complexity Low_complexity 1 30 0 347 254 9 9 chr15 57135222 57135336 -44245185 - L1ME4a LINE L1 -70 6051 5938 180 0 0 0 chr15 57135886 57135906 -44244615 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 210 244 0 0 chr15 57136328 57136373 -44244148 + CT-rich Low_complexity Low_complexity 3 47 0 317 268 65 41 chr15 57136565 57136688 -44243833 - L2 LINE L2 0 3313 3188 279 0 0 0 chr15 57136912 57136943 -44243578 + (CA)n Simple_repeat Simple_repeat 2 32 0 243 0 0 0 chr15 57136942 57136969 -44243552 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 476 264 84 62 chr15 57136980 57137266 -44243255 + L1ME3A LINE L1 949 1375 -5041 970 271 48 74 chr15 57137339 57138504 -44242017 + L1ME3A LINE L1 4790 5924 -520 732 239 193 0 chr15 57138529 57138726 -44241795 - MIR SINE MIR -24 238 4 382 295 28 13 chr15 57138731 57138993 -44241528 + L1ME3A LINE L1 5926 6192 -258 2456 226 94 72 chr15 57139054 57139776 -44240745 + MER69B DNA AcHobo 59 811 -1715 703 233 0 0 chr15 57139776 57139909 -44240612 + FLAM_A SINE Alu 1 133 0 2456 226 94 72 chr15 57139909 57140212 -44240309 + MER69B DNA AcHobo 811 1106 -120 367 254 26 18 chr15 57140716 57140830 -44239691 - MIR SINE MIR 0 262 148 240 143 0 0 chr15 57142610 57142652 -44237869 + (CA)n Simple_repeat Simple_repeat 2 43 0 284 267 58 50 chr15 57143433 57143553 -44236968 - MIR SINE MIR -71 137 17 198 263 105 0 chr15 57143755 57143837 -44236684 + MIR SINE MIR 101 192 -70 611 315 35 42 chr15 57144007 57144267 -44236254 - MIR SINE MIR -1 261 4 305 322 141 20 chr15 57146666 57146865 -44233656 + L3 LINE CR1 1268 1490 -87 1931 128 20 7 chr15 57147076 57147372 -44233149 + AluSx SINE Alu 1 300 -12 190 380 42 0 chr15 57147375 57147446 -44233075 + L3 LINE CR1 1489 1562 -15 1852 167 86 23 chr15 57147601 57148317 -44232204 - L1MA10 LINE L1 -440 5728 4963 2809 139 34 52 chr15 57148317 57148876 -44231645 + L1MA10 LINE L1 5725 6280 -54 2027 132 10 3 chr15 57148876 57149164 -44231357 - AluSx SINE Alu -22 290 1 2809 139 34 52 chr15 57149164 57149216 -44231305 + L1MA10 LINE L1 6280 6331 -3 21 0 0 0 chr15 57149362 57149383 -44231138 + AT_rich Low_complexity Low_complexity 1 21 0 659 280 70 37 chr15 57149801 57150044 -44230477 - MIR SINE MIR -3 259 9 3645 65 27 0 chr15 57150577 57151066 -44229455 + L1PA8 LINE L1 5670 6171 -1 360 285 65 18 chr15 57151096 57151265 -44229256 - MIR3 SINE MIR -71 137 10 515 331 23 42 chr15 57151279 57151531 -44228990 + MIR SINE MIR 11 262 0 243 329 136 13 chr15 57151538 57151693 -44228828 - L2 LINE L2 0 3272 3099 2983 106 110 12 chr15 57151757 57152239 -44228282 - MER1A DNA MER1_type 0 529 1 524 302 17 17 chr15 57152397 57152569 -44227952 + MIR SINE MIR 41 212 -50 260 246 29 14 chr15 57152596 57152665 -44227856 + GA-rich Low_complexity Low_complexity 6 75 0 182 263 70 0 chr15 57153769 57153826 -44226695 - MIR SINE MIR -73 135 75 268 314 64 21 chr15 57153859 57153999 -44226522 + MER117 DNA MER1_type 1 146 -51 29 60 0 0 chr15 57154492 57154542 -44225979 + AT_rich Low_complexity Low_complexity 1 50 0 872 264 48 4 chr15 57154886 57155113 -44225408 + MIR SINE MIR 3 239 -23 224 282 0 0 chr15 57156317 57156395 -44224126 + T-rich Low_complexity Low_complexity 1 78 0 303 28 0 0 chr15 57157429 57157465 -44223056 + (CA)n Simple_repeat Simple_repeat 1 36 0 304 216 0 0 chr15 57157964 57158015 -44222506 - MIR SINE MIR -157 105 55 21 0 0 0 chr15 57158042 57158063 -44222458 + AT_rich Low_complexity Low_complexity 1 21 0 498 286 108 22 chr15 57158304 57158489 -44222032 + MIR SINE MIR 47 247 -15 2105 138 0 10 chr15 57159475 57159779 -44220742 + AluSx SINE Alu 1 301 -11 405 39 0 0 chr15 57160646 57160697 -44219824 + (CA)n Simple_repeat Simple_repeat 2 52 0 288 173 0 80 chr15 57161377 57161452 -44219069 - MIR SINE MIR 0 262 194 825 262 110 0 chr15 57161472 57161704 -44218817 - MIR SINE MIR 0 262 6 318 370 90 35 chr15 57161953 57162264 -44218257 - L2 LINE L2 -419 2895 2568 362 319 29 22 chr15 57163112 57163250 -44217271 - MIR3 SINE MIR -66 142 4 218 304 152 0 chr15 57163350 57163429 -44217092 + MIR SINE MIR 40 130 -78 537 316 24 0 chr15 57163624 57163792 -44216729 + MIR SINE MIR 39 210 -52 237 167 0 0 chr15 57163799 57163841 -44216680 - L2 LINE L2 -4 3309 3268 247 326 34 88 chr15 57164328 57164475 -44216046 + L2 LINE L2 3123 3261 -11 200 326 116 20 chr15 57165728 57165875 -44214646 - MIR SINE MIR -70 192 32 201 74 0 0 chr15 57167054 57167081 -44213440 + (A)n Simple_repeat Simple_repeat 1 27 0 332 317 39 19 chr15 57167145 57167404 -44213117 - MER34 LTR ERV1 -278 264 1 930 255 66 29 chr15 57168578 57168927 -44211594 + MER21B LTR ERV1 378 739 -124 248 356 30 8 chr15 57169337 57169469 -44211052 - MIR SINE MIR -56 152 18 504 267 85 23 chr15 57169732 57169908 -44210613 + MIR SINE MIR 58 244 -18 406 268 79 49 chr15 57170234 57170398 -44210123 - MIR SINE MIR 0 262 94 586 208 101 82 chr15 57170643 57170801 -44209720 + MER58C DNA MER1_type 5 158 -2262 2079 99 0 38 chr15 57170801 57171094 -44209427 + AluSx SINE Alu 1 282 -30 288 0 0 0 chr15 57171100 57171132 -44209389 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 586 208 101 82 chr15 57171132 57171173 -44209348 + MER58C DNA MER1_type 162 215 0 2256 129 7 0 chr15 57171319 57171628 -44208893 + AluSx SINE Alu 1 311 -1 296 280 51 77 chr15 57172311 57172466 -44208055 + MIR SINE MIR 32 175 -59 3908 188 31 4 chr15 57173932 57174694 -44205827 + LTR39 LTR ERV1 1 783 0 18870 121 21 23 chr15 57174897 57178178 -44202343 + L1P LINE L1 11 3285 -2861 674 205 51 6 chr15 57178295 57178451 -44202070 - MER96B DNA MER1_type? -2 415 253 197 278 241 9 chr15 57178767 57178875 -44201646 + L2 LINE L2 3138 3270 -2 447 92 0 0 chr15 57180669 57180734 -44199787 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 2005 125 0 4 chr15 57180739 57181019 -44199502 - AluSp SINE Alu -34 279 1 18901 70 11 6 chr15 57181827 57185331 -44195190 + L1PA6 LINE L1 2640 6154 0 5922 204 129 61 chr15 57185658 57188465 -44192056 + L1MCa LINE L1 29 3030 -3396 269 199 88 29 chr15 57188642 57188778 -44191743 + L1ME4a LINE L1 5740 5883 -238 303 226 48 0 chr15 57188850 57188934 -44191587 + L1ME4a LINE L1 6031 6118 -3 378 274 115 58 chr15 57189604 57189812 -44190709 - L1MC4a LINE L1 -1737 6071 5852 1119 271 43 35 chr15 57189894 57190377 -44190144 - L1MC4a LINE L1 -1982 5826 5340 1875 139 0 0 chr15 57190510 57190769 -44189752 - AluSx SINE Alu -30 282 24 475 311 70 25 chr15 57190877 57191192 -44189329 - L1MC4a LINE L1 -1044 5102 4774 228 297 53 24 chr15 57191381 57191590 -44188931 - L1MC4a LINE L1 -1563 4583 4369 2340 96 7 0 chr15 57191746 57192039 -44188482 - AluSc SINE Alu -14 295 1 692 269 144 41 chr15 57192041 57192479 -44188042 + HAL1 LINE L1 332 814 -1693 925 216 70 84 chr15 57192480 57192851 -44187670 - MLT1A2 LTR MaLR -2 372 7 2030 105 40 53 chr15 57195083 57195463 -44185058 - THE1C LTR MaLR 0 375 1 363 232 36 9 chr15 57196065 57196177 -44184344 - MLT1I LTR MaLR -235 174 60 1174 236 41 16 chr15 57196548 57197027 -44183494 - MLT1E LTR MaLR -8 585 1 1459 90 0 5 chr15 57197059 57197260 -44183261 + L1PA7 LINE L1 5942 6141 -13 368 267 33 0 chr15 57197822 57197912 -44182609 - L2 LINE L2 -2 3270 3178 21 0 0 0 chr15 57198786 57198807 -44181714 + AT_rich Low_complexity Low_complexity 1 21 0 1608 108 42 0 chr15 57198821 57199080 -44181441 + L1MA2 LINE L1 6035 6304 0 189 0 0 0 chr15 57199111 57199132 -44181389 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 2076 90 0 60 chr15 57199134 57199435 -44181086 - AluSx SINE Alu -29 283 1 199 333 61 113 chr15 57199472 57199849 -44180672 - L3 LINE CR1 -43 1534 1180 2090 116 41 80 chr15 57199849 57200116 -44180405 + MER57A LTR ERV1 1 248 -155 1892 140 13 32 chr15 57200116 57200431 -44180090 - AluSx SINE Alu -3 309 1 2090 116 41 80 chr15 57200431 57200578 -44179943 + MER57A LTR ERV1 248 399 -4 199 333 61 113 chr15 57200578 57200624 -44179897 - L3 LINE CR1 -397 1180 1133 259 342 0 0 chr15 57200857 57200936 -44179585 - L3 LINE CR1 -453 1124 1046 250 288 45 18 chr15 57201075 57201186 -44179335 + MIR SINE MIR 34 147 -115 448 275 23 0 chr15 57203161 57203292 -44177229 + MIR SINE MIR 14 147 -115 917 290 116 55 chr15 57203528 57203947 -44176574 + L2 LINE L2 1638 2121 -1193 1939 153 3 0 chr15 57203947 57204235 -44176286 - AluSx SINE Alu -23 289 1 917 290 116 55 chr15 57204235 57204542 -44175979 + L2 LINE L2 2121 2408 -906 1506 154 80 25 chr15 57204764 57205050 -44175471 - AluJb SINE Alu 0 312 11 314 286 76 137 chr15 57205059 57205374 -44175147 + L2 LINE L2 2972 3267 -5 365 320 76 26 chr15 57205410 57205586 -44174935 + MIR SINE MIR 20 192 -70 412 301 97 51 chr15 57206865 57207081 -44173440 + MIR SINE MIR 34 259 -3 974 282 19 39 chr15 57207170 57207582 -44172939 + MLT1I LTR MaLR 1 404 -5 1971 134 0 3 chr15 57207931 57208251 -44172270 + AluSx SINE Alu 1 319 0 425 107 24 0 chr15 57208299 57208383 -44172138 + L1MB4 LINE L1 6095 6180 0 813 163 58 41 chr15 57209012 57209184 -44171337 + AluJo SINE Alu 1 175 -137 523 135 208 0 chr15 57209286 57209523 -44170998 + AluJo SINE Alu 181 437 0 302 236 44 31 chr15 57209669 57209808 -44170713 - MIR SINE MIR -62 146 3 15389 168 36 6 chr15 57210684 57213455 -44167066 - L1PBa LINE L1 -1884 4978 2289 2387 100 3 0 chr15 57213455 57213764 -44166757 - AluSp SINE Alu -3 310 1 2359 103 0 0 chr15 57213769 57214079 -44166442 - AluSg SINE Alu 0 310 1 15389 168 36 6 chr15 57214079 57215770 -44164751 - L1PBa LINE L1 -4576 2286 378 1851 141 12 29 chr15 57215770 57216122 -44164399 - MLT2A2 LTR ERVL -144 309 1 275 279 163 41 chr15 57216259 57216431 -44164090 - MIR SINE MIR -57 205 13 2070 109 7 3 chr15 57216517 57216800 -44163721 + AluSx SINE Alu 1 284 -28 487 272 0 40 chr15 57216802 57216927 -44163594 + MER5B DNA MER1_type 56 175 -3 1678 155 20 32 chr15 57217479 57217827 -44162694 - L1MC2 LINE L1 -186 6158 5815 552 262 82 34 chr15 57217838 57218443 -44162078 - L1MDb LINE L1 -4788 1799 1128 440 113 142 9 chr15 57218476 57218582 -44161939 - L1MC3 LINE L1 0 7785 7666 417 291 60 28 chr15 57218582 57218764 -44161757 + L1ME LINE L1 5068 5255 -891 724 85 19 0 chr15 57218809 57218915 -44161606 + L1PB1 LINE L1 6043 6150 -1 3785 143 16 2 chr15 57218932 57219553 -44160968 + L1PA16 LINE L1 5523 6152 -14 28 19 0 56 chr15 57219555 57219609 -44160912 + AT_rich Low_complexity Low_complexity 1 51 0 379 303 141 41 chr15 57219631 57219994 -44160527 + L1ME LINE L1 5366 5764 -398 534 294 28 9 chr15 57220535 57220746 -44159775 - MLT1J LTR MaLR -296 215 1 337 354 94 39 chr15 57221112 57221500 -44159021 - L2 LINE L2 -226 3046 2633 343 275 42 33 chr15 57221513 57221633 -44158888 - L2 LINE L2 -944 2370 2250 798 236 140 36 chr15 57221811 57222146 -44158375 + L3 LINE CR1 504 873 -704 283 280 32 21 chr15 57222624 57222717 -44157804 + L2 LINE L2 3179 3272 0 194 54 0 54 chr15 57224104 57224141 -44156380 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 870 151 8 0 chr15 57224150 57224276 -44156245 + FLAM_C SINE Alu 1 127 -16 357 118 5 12 chr15 57224795 57224999 -44155522 + AluSx SINE Alu 1 248 -52 788 198 117 15 chr15 57224999 57225196 -44155325 + AluJo SINE Alu 85 301 -11 3823 140 34 24 chr15 57226476 57227177 -44153344 - MER50 LTR ERV1 -26 708 1 2666 97 57 102 chr15 57227622 57228259 -44152262 - MER4B LTR ERV1 0 779 1 29 28 0 0 chr15 57229399 57229435 -44151086 + AT_rich Low_complexity Low_complexity 1 36 0 212 312 24 88 chr15 57229506 57229575 -44150946 - L2 LINE L2 -5 3308 3249 2392 74 0 7 chr15 57229575 57229874 -44150647 + AluY SINE Alu 1 297 -14 212 312 24 88 chr15 57229874 57229929 -44150592 - L2 LINE L2 -64 3249 3192 1363 148 0 0 chr15 57230380 57230583 -44149938 + AluSq SINE Alu 96 298 -15 257 275 165 11 chr15 57230599 57230690 -44149831 + MIR SINE MIR 158 262 0 790 241 30 5 chr15 57230822 57231021 -44149500 + MER63A DNA MER1_type 7 210 0 1683 162 3 37 chr15 57231319 57231615 -44148906 + AluJb SINE Alu 15 300 -12 315 274 74 84 chr15 57231802 57231992 -44148529 + L1M2a LINE L1 522 709 -6459 526 207 101 71 chr15 57232985 57233154 -44147367 - MER69A DNA AcHobo 0 177 4 397 295 73 11 chr15 57233177 57233348 -44147173 - MIR SINE MIR -50 212 32 396 0 0 0 chr15 57234119 57234163 -44146358 + (CA)n Simple_repeat Simple_repeat 2 45 0 275 204 0 0 chr15 57234721 57234770 -44145751 - L2 LINE L2 -14 3299 3251 * 363 283 0 54 chr15 57234743 57234864 -44145657 + L2 LINE L2 3137 3251 -21 249 33 0 0 chr15 57234870 57234900 -44145621 + (CAT)n Simple_repeat Simple_repeat 3 32 0 324 256 68 74 chr15 57235259 57235435 -44145086 - MIR SINE MIR -5 257 83 199 344 10 10 chr15 57235793 57235889 -44144632 - MIR SINE MIR -14 248 153 2872 82 8 0 chr15 57236343 57236695 -44143826 - THE1A LTR MaLR 0 355 1 12268 93 6 5 chr15 57236698 57238272 -44142249 - THE1A-int LTR MaLR -4 1576 1 2798 85 6 0 chr15 57238272 57238624 -44141897 - THE1A LTR MaLR 0 355 2 2094 147 0 0 chr15 57238682 57238988 -44141533 + AluSx SINE Alu 1 306 -6 2072 135 0 0 chr15 57239000 57239288 -44141233 + AluSc SINE Alu 1 288 -21 381 322 11 57 chr15 57239450 57239627 -44140894 + L3 LINE CR1 1114 1282 -295 1659 191 10 0 chr15 57239681 57239974 -44140547 - AluJo SINE Alu -16 296 1 265 250 46 28 chr15 57240496 57240604 -44139917 + GA-rich Low_complexity Low_complexity 4 113 0 1801 153 17 10 chr15 57240836 57241131 -44139390 + AluJb SINE Alu 1 297 -15 350 78 94 0 chr15 57242839 57242903 -44137618 + L1MA5 LINE L1 6209 6278 -22 539 291 98 59 chr15 57242972 57243253 -44137268 - MLT1K LTR MaLR -3 585 266 249 33 0 0 chr15 57243253 57243283 -44137238 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 539 291 98 59 chr15 57243283 57243444 -44137077 - MLT1K LTR MaLR -322 266 113 8102 27 22 0 chr15 57243662 57244589 -44135932 - L1PA3 LINE L1 -5 6150 5220 2342 76 0 13 chr15 57244653 57244954 -44135567 - AluY SINE Alu -14 297 1 454 230 142 27 chr15 57245061 57245209 -44135312 - HAL1 LINE L1 0 2507 2343 346 67 0 0 chr15 57245210 57245255 -44135266 - MER54B LTR ERVL 0 793 749 968 213 0 0 chr15 57245288 57245452 -44135069 - FRAM SINE Alu -2 164 1 5163 153 17 22 chr15 57245453 57246336 -44134185 - MER54A LTR ERVL -30 871 6 4785 254 107 48 chr15 57246337 57246952 -44133569 - HAL1 LINE L1 -160 2347 1770 3555 84 0 22 chr15 57246952 57247406 -44133115 - MLT2A1 LTR ERVL 0 444 1 4785 254 107 48 chr15 57247406 57247699 -44132822 - HAL1 LINE L1 -737 1770 1496 2690 133 62 5 chr15 57247699 57248104 -44132417 - MSTA LTR MaLR 0 428 1 4785 254 107 48 chr15 57248104 57248439 -44132082 - HAL1 LINE L1 -1011 1496 1182 2326 92 3 3 chr15 57248439 57248743 -44131778 - AluY SINE Alu -7 304 1 4785 254 107 48 chr15 57248743 57249346 -44131175 - HAL1 LINE L1 -1325 1182 369 1098 171 9 55 chr15 57249346 57249563 -44130958 - MER3 DNA MER1_type 0 209 3 4785 254 107 48 chr15 57249563 57249713 -44130808 - HAL1 LINE L1 -2138 369 229 509 244 24 24 chr15 57249715 57249838 -44130683 + L2 LINE L2 3191 3313 0 585 313 78 9 chr15 57249900 57250130 -44130391 + LTR67 LTR ERVL 2 247 -310 304 148 66 0 chr15 57250868 57250929 -44129592 + L1MD3 LINE L1 7212 7276 -719 710 197 0 0 chr15 57250931 57251053 -44129468 + MLT1F1 LTR MaLR 1 122 -445 2778 168 43 38 chr15 57251055 57251537 -44128984 + L1MD3 LINE L1 7403 7890 -105 2469 80 6 0 chr15 57251537 57251848 -44128673 + AluSp SINE Alu 1 313 0 2778 168 43 38 chr15 57251848 57251943 -44128578 + L1MD3 LINE L1 7890 7983 -12 301 326 11 0 chr15 57252600 57252692 -44127829 - L2 LINE L2 -5 3267 3175 918 277 60 31 chr15 57252692 57253078 -44127443 + L1ME3A LINE L1 5555 5951 -219 2907 86 0 23 chr15 57253461 57253846 -44126675 + L1PA6 LINE L1 5768 6143 -11 2280 87 10 0 chr15 57253861 57254161 -44126360 + AluSp SINE Alu 1 303 -10 390 371 48 0 chr15 57254522 57254732 -44125789 - L2 LINE L2 -656 2658 2439 2640 39 0 3 chr15 57255209 57255543 -44124978 - AluY SINE Alu 0 333 1 1465 169 0 16 chr15 57255982 57256223 -44124298 + MSTA LTR MaLR 1 237 -191 773 93 19 0 chr15 57256223 57256330 -44124191 - MSTA LTR MaLR 0 428 320 439 257 69 40 chr15 57256678 57256853 -44123668 - MIR SINE MIR -43 219 40 2048 148 45 34 chr15 57257283 57257640 -44122881 - THE1B LTR MaLR -3 361 1 216 360 12 8 chr15 57257663 57257774 -44122747 + MIR SINE MIR 10 118 -90 682 171 264 0 chr15 57258099 57258239 -44122282 + MER45A DNA AcHobo 2 178 0 838 186 10 93 chr15 57258599 57258674 -44121847 + MER5A DNA MER1_type 1 81 -108 1898 138 10 10 chr15 57258674 57258964 -44121557 + AluJo SINE Alu 1 290 -22 2659 104 6 8 chr15 57258971 57259327 -44121194 - THE1A LTR MaLR 0 355 1 838 186 10 93 chr15 57259327 57259447 -44121074 + MER5A DNA MER1_type 87 187 -2 24 0 0 0 chr15 57260482 57260506 -44120015 + AT_rich Low_complexity Low_complexity 1 24 0 300 289 0 0 chr15 57260556 57260632 -44119889 + MIR SINE MIR 183 258 -4 280 336 33 25 chr15 57260666 57260788 -44119733 - L2 LINE L2 -33 3239 3117 754 197 0 0 chr15 57260899 57261031 -44119490 + FRAM SINE Alu 35 166 -10 234 0 0 0 chr15 57261031 57261057 -44119464 + (GGGGA)n Simple_repeat Simple_repeat 3 28 0 214 292 152 11 chr15 57261727 57261905 -44118616 + MIR SINE MIR 10 212 -50 434 325 80 18 chr15 57262391 57262554 -44117967 - L2 LINE L2 0 3272 3100 1602 184 17 0 chr15 57262918 57263206 -44117315 + L1PB4 LINE L1 5864 6156 0 1290 181 0 62 chr15 57263255 57263514 -44117007 - AluJo SINE Alu -41 271 29 245 208 83 0 chr15 57263520 57263592 -44116929 + L1M1 LINE L1 17 94 -7471 248 159 0 0 chr15 57263623 57263665 -44116856 - Alu SINE Alu -268 35 1 871 246 66 8 chr15 57263665 57263921 -44116600 - L1ME LINE L1 -298 5823 5553 523 238 245 0 chr15 57264126 57264273 -44116248 - MER5A DNA MER1_type 0 189 7 317 278 11 0 chr15 57264271 57264361 -44116160 + MIR3 SINE MIR 88 178 -30 * 2084 113 0 3 chr15 57264385 57264669 -44115852 - AluSx SINE Alu -29 283 1 191 32 65 0 chr15 57267920 57267951 -44112570 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 224 306 0 0 chr15 57269137 57269199 -44111322 - MIR3 SINE MIR -21 187 126 1982 132 0 0 chr15 57269210 57269483 -44111038 + AluSx SINE Alu 1 273 -39 402 141 40 10 chr15 57269483 57269582 -44110939 + GA-rich Low_complexity Low_complexity 2 103 0 201 250 0 0 chr15 57269600 57269636 -44110885 + A-rich Low_complexity Low_complexity 3 38 0 2853 186 19 45 chr15 57271063 57271161 -44109360 + L1MC2 LINE L1 4900 4999 -1345 1824 144 26 30 chr15 57271161 57271466 -44109055 + AluSx SINE Alu 1 304 -8 2853 186 19 45 chr15 57271466 57271924 -44108597 + L1MC2 LINE L1 4999 5418 -926 2227 125 0 0 chr15 57271924 57272236 -44108285 + AluSx SINE Alu 1 312 0 2853 186 19 45 chr15 57272236 57272660 -44107861 + L1MC2 LINE L1 5418 5851 -493 1684 96 0 8 chr15 57272639 57272661 -44107860 + L1P LINE L1 1804 1825 -4321 * 1886 159 0 0 chr15 57272661 57272944 -44107577 + AluSx SINE Alu 1 283 -29 1684 96 0 8 chr15 57272944 57273161 -44107360 + L1P LINE L1 1825 2041 -4105 2069 123 26 13 chr15 57273935 57274237 -44106284 - AluSx SINE Alu -6 306 1 226 333 19 0 chr15 57275262 57275370 -44105151 + (CATATA)n Simple_repeat Simple_repeat 3 112 0 1116 52 0 15 chr15 57275997 57276133 -44104388 - AluSp/q SINE Alu -16 297 164 1184 115 0 0 chr15 57276646 57276811 -44103710 - AluSg/x SINE Alu -4 306 142 2280 82 0 3 chr15 57276925 57277228 -44103293 - AluY SINE Alu -9 302 1 661 150 10 0 chr15 57278485 57278585 -44101936 + AluSg/x SINE Alu 197 297 -15 1290 227 34 70 chr15 57278593 57278773 -44101748 + L1MC4 LINE L1 6535 6720 -1322 1871 97 71 11 chr15 57278773 57278917 -44101604 - AluSp SINE Alu -30 283 149 234 0 0 0 chr15 57278917 57278943 -44101578 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1871 97 71 11 chr15 57278943 57279065 -44101456 - AluSp SINE Alu -164 149 1 2045 124 7 7 chr15 57279066 57279356 -44101165 - AluSx SINE Alu -22 290 1 1290 227 34 70 chr15 57279356 57279557 -44100964 + L1MC4 LINE L1 6719 6904 -1138 1116 171 0 0 chr15 57279563 57279733 -44100788 + FRAM SINE Alu 2 171 -5 1632 100 0 0 chr15 57279738 57279948 -44100573 + AluSc SINE Alu 87 296 -13 1464 143 0 22 chr15 57279977 57280207 -44100314 + AluJo SINE Alu 12 236 -76 2126 107 3 3 chr15 57280307 57280596 -44099925 - AluSx SINE Alu -23 289 1 515 109 0 65 chr15 57280603 57280695 -44099826 - FLAM_C SINE Alu -3 140 55 682 172 60 0 chr15 57280714 57280830 -44099691 - FLAM_C SINE Alu -19 124 2 2245 83 0 20 chr15 57280912 57281214 -44099307 + AluY SINE Alu 1 296 -15 1260 220 11 7 chr15 57281579 57281852 -44098669 - AluJb SINE Alu -11 301 28 226 276 105 13 chr15 57282617 57282693 -44097828 - MER5B DNA MER1_type -6 172 90 469 292 49 0 chr15 57282982 57283126 -44097395 - MIR3 SINE MIR -24 184 34 1837 156 28 0 chr15 57284332 57284621 -44095900 - AluJb SINE Alu -15 297 1 2180 111 0 13 chr15 57284750 57285048 -44095473 + AluSg SINE Alu 1 294 -16 239 247 5 93 chr15 57286400 57286594 -44093927 + GA-rich Low_complexity Low_complexity 3 179 0 2102 109 10 7 chr15 57286707 57287001 -44093520 - AluSx SINE Alu -17 295 1 1414 159 16 118 chr15 57288362 57288726 -44091795 + MER7A DNA MER2_type 21 345 -1 406 296 89 35 chr15 57290323 57290492 -44090029 - MER5A DNA MER1_type -2 187 10 253 296 37 12 chr15 57291041 57291122 -44089399 + MIR SINE MIR 109 191 -71 716 260 117 36 chr15 57291310 57291695 -44088826 - L1ME4a LINE L1 -27 6094 5679 6434 71 20 33 chr15 57291712 57292700 -44087821 - SVA Other Other 0 1386 433 4034 62 28 2 chr15 57292749 57293281 -44087240 - SVA Other Other -645 741 196 207 270 0 40 chr15 57293599 57293673 -44086848 + MIR3 SINE MIR 121 191 -17 1840 183 0 3 chr15 57294354 57294665 -44085856 + AluJo SINE Alu 1 310 -2 2373 66 7 3 chr15 57295846 57296148 -44084373 + AluSc SINE Alu 1 303 -6 21 36 0 0 chr15 57296317 57296345 -44084176 + AT_rich Low_complexity Low_complexity 1 28 0 2174 119 0 16 chr15 57296491 57296802 -44083719 - AluSx SINE Alu 0 312 7 2106 94 56 14 chr15 57296854 57297142 -44083379 - AluSp SINE Alu -10 303 4 971 123 0 0 chr15 57297495 57297625 -44082896 + FRAM SINE Alu 23 152 -24 468 297 72 10 chr15 57297793 57297988 -44082533 + L2 LINE L2 3107 3313 0 759 151 220 25 chr15 57298737 57298896 -44081625 - MLT1F1 LTR MaLR 0 567 378 356 134 256 12 chr15 57298896 57298978 -44081543 - MLT1F1 LTR MaLR -461 106 5 2425 63 0 0 chr15 57299706 57299993 -44080528 + AluY SINE Alu 1 287 -24 195 342 148 34 chr15 57300254 57300640 -44079881 - L2 LINE L2 -18 3254 2825 237 294 188 12 chr15 57300929 57301014 -44079507 - L2 LINE L2 -39 3233 3134 571 198 0 18 chr15 57301224 57301335 -44079186 + MER47A DNA MER2_type 11 119 -247 422 168 0 192 chr15 57301338 57301406 -44079115 + MER47A DNA MER2_type 266 301 -2022 574 260 31 0 chr15 57301406 57301533 -44078988 - FLAM_C SINE Alu -2 131 1 422 168 0 192 chr15 57301533 57301589 -44078932 + MER47A DNA MER2_type 301 366 0 1459 167 139 57 chr15 57301995 57302361 -44078160 + MSTD LTR MaLR 1 396 0 960 67 8 0 chr15 57302450 57302570 -44077951 + AluSq/x SINE Alu 3 123 -189 1364 208 15 7 chr15 57302721 57302990 -44077531 - AluJo SINE Alu -35 277 7 638 207 129 0 chr15 57304311 57304451 -44076070 - MER5A DNA MER1_type -28 161 4 4133 190 107 16 chr15 57304690 57305326 -44075195 + Tigger6a DNA MER2_type 2 810 -787 2155 125 0 6 chr15 57305326 57305638 -44074883 + AluSx SINE Alu 1 310 -2 4133 190 107 16 chr15 57305638 57305939 -44074582 + Tigger6a DNA MER2_type 810 1082 -1 266 264 28 0 chr15 57305942 57306014 -44074507 + (TATG)n Simple_repeat Simple_repeat 3 76 0 1668 176 0 34 chr15 57307047 57307365 -44073156 + AluSx SINE Alu 1 308 0 1032 85 0 0 chr15 57307376 57307505 -44073016 + AluSq/x SINE Alu 1 129 -184 252 320 88 17 chr15 57307741 57307922 -44072599 + L2 LINE L2 3120 3313 0 1377 167 27 59 chr15 57308205 57308543 -44071978 - MER65A LTR ERV1 0 445 53 2798 86 21 3 chr15 57308543 57308916 -44071605 - L1PA10 LINE L1 0 6168 5789 1377 167 27 59 chr15 57308916 57308968 -44071553 - MER65A LTR ERV1 -392 53 1 21 71 0 0 chr15 57309976 57310018 -44070503 + AT_rich Low_complexity Low_complexity 1 42 0 455 286 57 41 chr15 57310185 57310430 -44070091 - L1ME LINE L1 -327 5794 5546 354 263 31 10 chr15 57310533 57310736 -44069785 - L1ME LINE L1 -660 5506 5293 1734 103 117 32 chr15 57310747 57311028 -44069493 + AluSq SINE Alu 1 305 -8 2288 110 0 3 chr15 57311958 57312266 -44068255 + AluSx SINE Alu 1 307 -5 443 127 0 0 chr15 57312372 57312443 -44068078 + L1MB2 LINE L1 6070 6140 -31 1594 188 37 20 chr15 57312525 57312823 -44067698 + AluJb SINE Alu 3 305 -7 1041 196 71 5 chr15 57313027 57313251 -44067270 - AluJo SINE Alu -51 261 23 437 293 155 55 chr15 57313251 57313751 -44066770 + L2 LINE L2 2754 3309 -4 248 324 17 74 chr15 57313914 57314090 -44066431 - L1ME3A LINE L1 -1 6169 6004 2090 114 13 7 chr15 57314219 57314517 -44066004 - AluSq SINE Alu -13 300 1 828 239 125 11 chr15 57314519 57314791 -44065730 - L1ME3A LINE L1 -223 5947 5645 1018 194 107 0 chr15 57314791 57315007 -44065514 - Tigger5 DNA MER2_type 0 2323 2085 298 222 0 16 chr15 57315028 57315091 -44065430 - Tigger5 DNA MER2_type -2261 62 1 699 157 20 68 chr15 57315091 57315238 -44065283 - L1ME3A LINE L1 -524 5646 5507 201 132 0 0 chr15 57315262 57315300 -44065221 + (GA)n Simple_repeat Simple_repeat 2 39 0 236 256 24 0 chr15 57315352 57315434 -44065087 - L1ME LINE L1 -846 5300 5217 410 191 21 0 chr15 57315456 57315550 -44064971 - L1MA8 LINE L1 -4 6287 6192 233 383 0 12 chr15 57315650 57315731 -44064790 + polypurine Low_complexity Low_complexity 3 82 0 1679 148 88 31 chr15 57316538 57316890 -44063631 + THE1C LTR MaLR 1 372 -3 247 240 173 0 chr15 57317186 57317261 -44063260 - L2 LINE L2 -1 3271 3184 1831 154 14 3 chr15 57317400 57317692 -44062829 - AluJb SINE Alu -2 310 16 260 222 89 11 chr15 57317741 57317831 -44062690 - L1ME4a LINE L1 -4 6117 6021 925 204 0 0 chr15 57318777 57318944 -44061577 - FAM SINE Alu -12 173 7 422 257 29 0 chr15 57320319 57320424 -44060097 + MIR SINE MIR 141 248 -14 21 0 0 0 chr15 57321252 57321273 -44059248 + AT_rich Low_complexity Low_complexity 1 21 0 2341 105 0 7 chr15 57321678 57321982 -44058539 + AluSg SINE Alu 1 302 -8 2260 104 3 0 chr15 57322005 57322304 -44058217 + AluSx SINE Alu 1 300 -12 312 205 193 0 chr15 57322765 57322848 -44057673 - MIR SINE MIR -115 147 49 838 187 13 19 chr15 57322944 57323099 -44057422 - FRAM SINE Alu -30 146 1 3301 169 125 85 chr15 57323100 57323689 -44056832 - L1MC3 LINE L1 -6 7779 7215 295 197 30 15 chr15 57323689 57323755 -44056766 - MLT1F1 LTR MaLR -456 111 45 3301 169 125 85 chr15 57323755 57323983 -44056538 - L1MC3 LINE L1 -570 7215 6998 297 0 0 0 chr15 57323983 57324016 -44056505 + (TG)n Simple_repeat Simple_repeat 1 33 0 * 357 24 0 0 chr15 57324015 57324057 -44056464 + (GA)n Simple_repeat Simple_repeat 1 42 0 3301 169 125 85 chr15 57324016 57324104 -44056417 - L1MC3 LINE L1 -787 6998 6812 240 59 0 0 chr15 57324104 57324138 -44056383 + (GA)n Simple_repeat Simple_repeat 1 34 0 398 115 0 16 chr15 57324139 57324200 -44056321 - L1MC3 LINE L1 -929 6856 6797 16813 66 16 1 chr15 57324211 57326998 -44053523 - L1PA6 LINE L1 -1 6153 3281 481 328 119 4 chr15 57328085 57328320 -44052201 - MIR SINE MIR 0 262 1 1704 185 112 62 chr15 57328882 57329363 -44051158 + MLT1D LTR MaLR 1 505 0 312 306 0 0 chr15 57329471 57329556 -44050965 - MIR3 SINE MIR -3 205 121 2151 92 10 7 chr15 57329759 57330051 -44050470 - AluSg SINE Alu -17 293 1 2175 218 48 28 chr15 57330101 57330596 -44049925 + MLT1D LTR MaLR 1 505 0 23 54 0 0 chr15 57331019 57331056 -44049465 + AT_rich Low_complexity Low_complexity 1 37 0 2221 109 0 19 chr15 57331056 57331369 -44049152 - AluSx SINE Alu -5 307 1 2033 116 3 0 chr15 57331490 57331774 -44048747 + AluY SINE Alu 1 285 -26 2410 57 3 10 chr15 57331966 57332264 -44048257 - AluY SINE Alu -15 296 1 192 77 0 0 chr15 57332345 57332371 -44048150 + (TC)n Simple_repeat Simple_repeat 1 26 0 2203 111 7 0 chr15 57332371 57332669 -44047852 - AluSq SINE Alu -13 300 1 276 225 133 33 chr15 57332952 57333072 -44047449 + MIR SINE MIR 67 198 -64 2380 159 86 49 chr15 57333367 57333399 -44047122 + L1MA4 LINE L1 5748 5777 -523 423 0 0 0 chr15 57333399 57333446 -44047075 + (CA)n Simple_repeat Simple_repeat 2 48 0 2380 159 86 49 chr15 57333446 57333880 -44046641 + L1MA4 LINE L1 5777 6193 -107 2362 53 7 0 chr15 57333880 57334185 -44046336 + AluY SINE Alu 1 307 0 2380 159 86 49 chr15 57334185 57334196 -44046325 + L1MA4 LINE L1 6193 6202 -98 2365 94 3 0 chr15 57334196 57334495 -44046026 + AluSp SINE Alu 1 300 -13 2380 159 86 49 chr15 57334495 57334547 -44045974 + L1MA4 LINE L1 6202 6300 0 1907 156 16 0 chr15 57334572 57334879 -44045642 + AluJb SINE Alu 1 312 0 1327 106 0 30 chr15 57335425 57335623 -44044898 + AluY SINE Alu 114 305 -6 23 0 0 29 chr15 57335832 57335849 -44044672 + AT_rich Low_complexity Low_complexity 1 17 -16 2071 114 3 7 chr15 57335849 57336138 -44044383 + AluSx SINE Alu 1 288 -24 23 0 0 29 chr15 57336138 57336154 -44044367 + AT_rich Low_complexity Low_complexity 17 33 0 264 200 271 14 chr15 57337667 57337737 -44042784 - MER5A DNA MER1_type -93 96 9 1656 178 3 43 chr15 57337905 57338209 -44042312 + AluJo SINE Alu 1 292 -20 193 302 0 0 chr15 57338216 57338259 -44042262 - MIR SINE MIR -161 101 59 28 29 0 0 chr15 57338318 57338353 -44042168 + AT_rich Low_complexity Low_complexity 1 35 0 434 223 48 29 chr15 57339674 57339777 -44040744 - MER91C DNA MER1_type 0 140 36 618 207 195 17 chr15 57341597 57341715 -44038806 + MER3 DNA MER1_type 5 101 -108 195 42 0 0 chr15 57341715 57341739 -44038782 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 618 207 195 17 chr15 57341739 57341794 -44038727 + MER3 DNA MER1_type 101 209 0 2491 59 0 7 chr15 57343025 57343330 -44037191 + AluY SINE Alu 1 303 -8 1831 134 86 3 chr15 57343822 57344135 -44036386 + MER46B DNA MER2_type 1 214 -22 825 124 41 8 chr15 57344136 57344257 -44036264 + L1PB1 LINE L1 6014 6138 -13 471 233 20 0 chr15 57344264 57344414 -44036107 + GA-rich Low_complexity Low_complexity 1 153 0 350 126 92 0 chr15 57344418 57344505 -44036016 + (CAGG)n Simple_repeat Simple_repeat 2 96 0 548 88 7 95 chr15 57344505 57344809 -44035712 + (GGGA)n Simple_repeat Simple_repeat 1 277 0 235 345 160 31 chr15 57345014 57345339 -44035182 - L2 LINE L2 -7 3265 2899 25 65 0 0 chr15 57347853 57347899 -44032622 + AT_rich Low_complexity Low_complexity 1 46 0 1968 201 54 14 chr15 57348299 57348817 -44031704 + MLT1F LTR MaLR 1 537 -5 2068 93 69 3 chr15 57349084 57349374 -44031147 + AluSc SINE Alu 1 309 0 758 112 0 45 chr15 57350612 57350746 -44029775 + L1MA4 LINE L1 6173 6300 0 2436 74 0 3 chr15 57351599 57351895 -44028626 + AluY SINE Alu 1 295 -16 2371 64 7 0 chr15 57354063 57354370 -44026151 + AluSp SINE Alu 1 309 0 243 264 0 0 chr15 57355982 57356035 -44024486 + T-rich Low_complexity Low_complexity 3 55 0 196 279 29 29 chr15 57356137 57356205 -44024316 - MIR3 SINE MIR -3 205 138 865 193 30 0 chr15 57356979 57357145 -44023376 + AluSg/x SINE Alu 138 308 -2 412 236 0 0 chr15 57357972 57358061 -44022460 + MIR SINE MIR 174 262 0 1030 142 0 6 chr15 57358150 57358323 -44022198 + Charlie3 DNA MER1_type 115 279 -2431 28 29 0 0 chr15 57359238 57359273 -44021248 + AT_rich Low_complexity Low_complexity 1 35 0 2125 100 11 0 chr15 57360434 57360738 -44019783 + AluSp SINE Alu 2 308 0 591 276 32 31 chr15 57360741 57360976 -44019545 - MIR SINE MIR -14 248 3 1289 214 119 49 chr15 57360987 57361256 -44019265 + LTR37B LTR ERV1 10 322 -146 1478 149 168 19 chr15 57361256 57361518 -44019003 - AluJo SINE Alu -1 301 1 1289 214 119 49 chr15 57361518 57361677 -44018844 + LTR37B LTR ERV1 322 468 0 275 325 17 26 chr15 57362233 57362350 -44018171 + MIR SINE MIR 81 196 -66 2309 80 7 13 chr15 57364659 57364960 -44015561 + AluSp SINE Alu 1 299 -14 256 144 10 144 chr15 57365907 57366011 -44014510 - L1ME4a LINE L1 -11 6110 6021 1137 102 102 10 chr15 57366015 57366211 -44014310 - Tigger1 DNA MER2_type 0 2418 2205 394 247 12 0 chr15 57366231 57366316 -44014205 - Tigger1 DNA MER2_type -2332 86 1 1990 115 0 47 chr15 57366384 57366680 -44013841 + AluSx SINE Alu 17 298 -14 557 208 0 17 chr15 57366779 57366899 -44013622 + L1MB8 LINE L1 6060 6177 -1 2061 124 3 0 chr15 57367246 57367561 -44012960 + AluSx SINE Alu 1 316 0 2355 100 0 0 chr15 57367561 57367870 -44012651 + AluSg1 SINE Alu 1 309 0 204 200 0 0 chr15 57368687 57368732 -44011789 + (TG)n Simple_repeat Simple_repeat 2 46 0 560 304 138 18 chr15 57368740 57368964 -44011557 - MIR SINE MIR -10 252 2 186 43 0 0 chr15 57369056 57369079 -44011442 + (A)n Simple_repeat Simple_repeat 1 23 0 2221 109 3 3 chr15 57369084 57369388 -44011133 + AluSp SINE Alu 1 304 -9 443 157 112 0 chr15 57369617 57369706 -44010815 + MER94 DNA DNA 2 100 -34 644 168 11 28 chr15 57370571 57370750 -44009771 + GA-rich Low_complexity Low_complexity 1 176 0 1786 148 7 14 chr15 57371681 57371991 -44008530 - AluJb SINE Alu 0 308 1 2288 106 0 6 chr15 57373848 57374159 -44006362 + AluSc SINE Alu 1 309 0 2027 130 7 7 chr15 57376105 57376397 -44004124 - AluSq SINE Alu -21 292 1 2342 87 0 0 chr15 57377818 57378107 -44002414 - AluY SINE Alu -22 289 1 2350 135 22 8 chr15 57378800 57379155 -44001366 - MER46B DNA MER2_type -1 235 1 512 279 17 41 chr15 57382089 57382261 -43998260 + MIR SINE MIR 90 257 -5 255 289 50 25 chr15 57383343 57383464 -43997057 - L1MEd LINE L1 -5984 135 12 21 0 0 0 chr15 57383724 57383745 -43996776 + AT_rich Low_complexity Low_complexity 1 21 0 553 279 146 17 chr15 57383745 57384032 -43996489 + L2 LINE L2 2990 3313 0 783 209 79 0 chr15 57384092 57384269 -43996252 - MIR SINE MIR 0 262 72 2086 132 0 3 chr15 57384361 57384656 -43995865 + AluSx SINE Alu 1 294 -18 502 314 99 0 chr15 57384743 57384934 -43995587 - MIR SINE MIR -45 217 8 2094 82 0 7 chr15 57386098 57386367 -43994154 - L1PA8 LINE L1 0 6172 5906 2062 150 0 0 chr15 57387036 57387330 -43993191 - AluSx SINE Alu -18 294 1 2077 130 16 3 chr15 57387672 57387979 -43992542 + AluSq SINE Alu 1 311 -2 234 0 0 0 chr15 57387996 57388022 -43992499 + (CA)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr15 57389607 57389635 -43990886 + AT_rich Low_complexity Low_complexity 1 28 0 2930 135 36 2 chr15 57390016 57390136 -43990385 + L1MB3 LINE L1 5663 5777 -406 222 91 0 0 chr15 57390136 57390169 -43990352 + (CA)n Simple_repeat Simple_repeat 2 34 0 2930 135 36 2 chr15 57390169 57390544 -43989977 + L1MB3 LINE L1 5777 6175 -8 442 316 154 33 chr15 57390544 57391032 -43989489 + L1MEc LINE L1 1277 1823 -4573 305 335 96 30 chr15 57391073 57391374 -43989147 + L1MEc LINE L1 1914 2234 -4162 322 158 0 0 chr15 57391463 57391520 -43989001 + L1M4 LINE L1 4616 4672 -1474 750 206 61 93 chr15 57391530 57391623 -43988898 + L1M4 LINE L1 4742 4836 -1310 1946 115 7 17 chr15 57391623 57391918 -43988603 + AluSx SINE Alu 1 292 -20 750 206 61 93 chr15 57391918 57391992 -43988529 + L1M4 LINE L1 4836 4911 -1235 941 200 118 0 chr15 57391992 57392187 -43988334 - MER20 DNA MER1_type 0 219 2 750 206 61 93 chr15 57392187 57392329 -43988192 + L1M4 LINE L1 4911 5042 -1104 697 182 44 25 chr15 57392331 57392490 -43988031 - MER20 DNA MER1_type -1 218 57 515 230 132 12 chr15 57392567 57392824 -43987697 + L1M4 LINE L1 5071 5358 -788 23 78 0 0 chr15 57392840 57392891 -43987630 + AT_rich Low_complexity Low_complexity 1 51 0 1011 229 112 35 chr15 57393123 57393685 -43986836 + L1MC5 LINE L1 6633 7224 -737 820 175 103 8 chr15 57393683 57393935 -43986586 + L1MA8 LINE L1 5994 6269 -22 * 1265 177 121 0 chr15 57394042 57394374 -43986147 + L1MC1 LINE L1 5917 6315 -18 2304 75 7 0 chr15 57394385 57394679 -43985842 + AluSq SINE Alu 1 296 -17 743 192 6 1 chr15 57394697 57394855 -43985666 + MER33 DNA MER1_type 1 149 -88 478 132 40 0 chr15 57394857 57394933 -43985588 - AluJo SINE Alu -176 136 58 811 161 0 35 chr15 57395064 57395207 -43985314 - FLAM_C SINE Alu 0 143 6 1343 129 23 14 chr15 57395213 57395430 -43985091 - AluJo SINE Alu -8 304 86 183 129 0 0 chr15 57397213 57397244 -43983277 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 265 315 54 28 chr15 57397611 57397723 -43982798 - MIR3 SINE MIR -108 100 9 461 56 125 14 chr15 57398788 57398860 -43981661 + MADE1 DNA Mariner 1 80 0 189 0 0 0 chr15 57399419 57399440 -43981081 + (A)n Simple_repeat Simple_repeat 1 21 0 236 224 0 35 chr15 57400283 57400341 -43980180 + L2 LINE L2 3235 3290 -23 2154 129 0 0 chr15 57400893 57401202 -43979319 + AluSx SINE Alu 1 309 -3 470 215 31 92 chr15 57401681 57401844 -43978677 + L2 LINE L2 3158 3310 -3 434 191 181 0 chr15 57402590 57402695 -43977826 - FLAM_A SINE Alu -8 125 2 189 0 0 0 chr15 57404520 57404541 -43975980 + (CCCCG)n Simple_repeat Simple_repeat 2 22 0 225 0 0 0 chr15 57404831 57404856 -43975665 + (T)n Simple_repeat Simple_repeat 1 25 0 468 0 0 0 chr15 57405251 57405303 -43975218 + (TG)n Simple_repeat Simple_repeat 2 53 0 326 23 23 0 chr15 57405359 57405402 -43975119 + (TG)n Simple_repeat Simple_repeat 2 45 0 301 40 0 122 chr15 57405461 57405535 -43974986 + (GA)n Simple_repeat Simple_repeat 1 65 0 216 0 0 0 chr15 57405595 57405619 -43974902 + (TG)n Simple_repeat Simple_repeat 2 25 0 306 0 0 0 chr15 57405678 57405712 -43974809 + (TG)n Simple_repeat Simple_repeat 2 35 0 225 247 22 90 chr15 57406778 57406867 -43973654 + L2 LINE L2 3184 3266 -6 266 254 15 0 chr15 57406881 57406948 -43973573 - MIR3 SINE MIR -3 205 138 1498 206 4 11 chr15 57406979 57407256 -43973265 - AluJb SINE Alu -37 275 1 410 263 196 38 chr15 57407344 57407553 -43972968 - MLT1G1 LTR MaLR -5 590 309 397 257 0 0 chr15 57407677 57407751 -43972770 - MER58 DNA MER1_type -312 74 1 2309 88 0 10 chr15 57407846 57408153 -43972368 + AluY SINE Alu 1 304 -7 2370 96 0 7 chr15 57408565 57408868 -43971653 + AluSc SINE Alu 2 302 -7 197 244 0 0 chr15 57408955 57408996 -43971525 + L2 LINE L2 3265 3305 -8 373 313 78 63 chr15 57409125 57409635 -43970886 + L2 LINE L2 2648 3240 -32 575 307 128 25 chr15 57409685 57410082 -43970439 + L1MC4a LINE L1 5464 5901 -220 240 86 0 0 chr15 57411479 57411514 -43969007 + (TA)n Simple_repeat Simple_repeat 2 36 0 222 253 313 0 chr15 57412586 57412669 -43967852 + L2 LINE L2 3199 3307 -6 21 0 0 0 chr15 57413151 57413172 -43967349 + AT_rich Low_complexity Low_complexity 1 21 0 449 226 212 0 chr15 57413492 57413638 -43966883 + MER5A DNA MER1_type 13 189 0 2410 54 14 7 chr15 57413655 57413952 -43966569 - AluSp SINE Alu -14 299 1 2184 114 3 3 chr15 57413952 57414250 -43966271 - AluSg SINE Alu -11 299 1 2203 95 7 7 chr15 57414302 57414598 -43965923 + AluSg SINE Alu 1 296 -14 315 306 25 31 chr15 57414658 57414818 -43965703 + MER117 DNA MER1_type 1 159 -38 331 190 0 0 chr15 57417441 57417499 -43963022 + L1MB8 LINE L1 5550 5607 -571 554 183 29 0 chr15 57417499 57417603 -43962918 + AluSp SINE Alu 1 107 -206 2041 162 63 68 chr15 57417603 57418189 -43962332 + L1MB8 LINE L1 5595 6177 -1 2368 80 7 0 chr15 57418562 57418864 -43961657 - AluSp SINE Alu -9 304 1 680 254 78 41 chr15 57418957 57419201 -43961320 - MIR SINE MIR -2 260 8 1069 243 36 26 chr15 57419256 57419561 -43960960 - MLT1A2 LTR MaLR -4 370 63 488 289 44 50 chr15 57419667 57419847 -43960674 + MIR3 SINE MIR 26 204 -4 2492 87 0 0 chr15 57420147 57420457 -43960064 + AluSg SINE Alu 1 310 0 180 270 34 67 chr15 57420682 57420771 -43959750 + L2 LINE L2 2772 2857 -457 1725 138 72 18 chr15 57420875 57421151 -43959370 + AluSx SINE Alu 1 291 -21 1959 152 96 51 chr15 57421219 57421707 -43958814 + LTR54 LTR ERV1 1 510 0 536 235 33 44 chr15 57422114 57422297 -43958224 - MIR SINE MIR -10 252 72 181 250 19 19 chr15 57424886 57424938 -43955583 - L2 LINE L2 0 3313 3262 348 292 58 98 chr15 57425964 57426241 -43954280 - L1ME4a LINE L1 -158 5963 5698 299 223 97 10 chr15 57426243 57426346 -43954175 - L1ME4a LINE L1 -452 5669 5558 670 187 8 15 chr15 57426700 57426834 -43953687 - FLAM_C SINE Alu 0 133 1 600 162 134 0 chr15 57426973 57427115 -43953406 + L1M4c LINE L1 2295 2455 -3929 246 126 0 0 chr15 57427147 57427195 -43953326 - Alu SINE Alu -265 36 1 259 233 270 5 chr15 57427195 57427384 -43953137 - L1MC/D LINE L1 -2008 5800 5562 1543 187 40 4 chr15 57427478 57427756 -43952765 + AluJo SINE Alu 3 290 -22 1694 148 4 11 chr15 57428080 57428358 -43952163 + AluJb SINE Alu 1 276 -36 183 114 0 0 chr15 57428358 57428393 -43952128 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 1597 199 18 3 chr15 57428430 57428712 -43951809 + AluJb SINE Alu 1 286 -26 676 203 0 16 chr15 57428835 57428963 -43951558 - FLAM_A SINE Alu -3 130 5 225 220 66 44 chr15 57429512 57429603 -43950918 - L1ME4a LINE L1 -33 6088 5996 319 181 9 124 chr15 57430722 57430827 -43949694 - MER20B DNA MER1_type -1 782 690 26 0 0 0 chr15 57430870 57430896 -43949625 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr15 57433092 57433127 -43947394 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr15 57433360 57433391 -43947130 + AT_rich Low_complexity Low_complexity 1 31 0 379 76 0 30 chr15 57434379 57434445 -43946076 + (CA)n Simple_repeat Simple_repeat 2 65 0 228 85 17 34 chr15 57435540 57435599 -43944922 + (CAAAAA)n Simple_repeat Simple_repeat 2 59 0 23 0 0 0 chr15 57436391 57436414 -43944107 + AT_rich Low_complexity Low_complexity 1 23 0 2113 115 3 10 chr15 57438233 57438537 -43941984 + AluSx SINE Alu 1 302 -10 200 272 25 49 chr15 57438631 57438712 -43941809 - MIR3 SINE MIR -115 93 15 224 232 0 0 chr15 57439309 57439365 -43941156 + A-rich Low_complexity Low_complexity 1 56 0 1796 153 0 20 chr15 57439705 57440000 -43940521 + AluJo SINE Alu 1 289 -23 696 286 43 17 chr15 57441811 57442042 -43938479 - MIR SINE MIR -10 252 16 30 43 0 43 chr15 57442408 57442450 -43938071 + AT_rich Low_complexity Low_complexity 1 40 -27 2081 119 3 0 chr15 57442450 57442735 -43937786 - AluSx SINE Alu -26 286 1 30 43 0 43 chr15 57442735 57442762 -43937759 + AT_rich Low_complexity Low_complexity 40 67 0 2057 117 7 0 chr15 57444250 57444556 -43935965 - AluSx SINE Alu 0 308 1 205 175 25 0 chr15 57444634 57444674 -43935847 - L2 LINE L2 -10 3303 3263 1917 123 4 7 chr15 57444720 57444996 -43935525 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr15 57445000 57445020 -43935501 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 216 219 0 24 chr15 57445035 57445076 -43935445 - MIR SINE MIR -195 67 28 968 222 82 16 chr15 57446589 57446832 -43933689 + MIR SINE MIR 4 262 0 1093 90 0 0 chr15 57447026 57447159 -43933362 + AluSq/x SINE Alu 1 133 -179 2127 102 14 14 chr15 57447165 57447460 -43933061 + AluSx SINE Alu 6 300 -12 247 155 24 143 chr15 57448644 57448728 -43931793 + MIR SINE MIR 30 103 -105 272 226 0 0 chr15 57448805 57448858 -43931663 - L3 LINE CR1 -5 1572 1520 772 281 48 43 chr15 57448897 57449244 -43931277 - MIR SINE MIR -1 261 13 576 295 134 34 chr15 57451035 57451333 -43929188 - MER102b DNA MER1_type -3 338 11 1654 172 0 21 chr15 57452753 57453043 -43927478 - AluJo SINE Alu -26 286 3 585 273 6 0 chr15 57456038 57456203 -43924318 - L1M4 LINE L1 -3140 3006 2841 951 136 136 151 chr15 57456219 57456345 -43924176 - AluJb SINE Alu -34 278 152 875 124 6 0 chr15 57456345 57456522 -43923999 + (TA)n Simple_repeat Simple_repeat 2 179 0 951 136 136 151 chr15 57456522 57456537 -43923984 - AluJb SINE Alu -160 152 138 1004 73 17 6 chr15 57456537 57456715 -43923806 + (TA)n Simple_repeat Simple_repeat 1 180 0 951 136 136 151 chr15 57456715 57456844 -43923677 - AluJb SINE Alu -174 138 11 816 263 103 35 chr15 57457095 57457581 -43922940 + L1ME4a LINE L1 5556 6074 -47 198 0 0 0 chr15 57457918 57457940 -43922581 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 233 308 146 0 chr15 57458346 57458476 -43922045 - L3b LINE CR1 -325 1258 1110 811 127 0 40 chr15 57458479 57458605 -43921916 - FLAM_A SINE Alu -9 133 13 2028 214 32 30 chr15 57458858 57459323 -43921198 + MER74A LTR ERVL 1 469 -89 1382 120 184 50 chr15 57459323 57459622 -43920899 + MER44D DNA MER2_type 1 609 0 2028 214 32 30 chr15 57459622 57459713 -43920808 + MER74A LTR ERVL 469 558 0 523 343 29 5 chr15 57459713 57459917 -43920604 - MIR SINE MIR -22 240 32 575 351 67 3 chr15 57460121 57460285 -43920236 + MARNA DNA Mariner 149 301 -285 270 0 0 0 chr15 57460285 57460315 -43920206 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 575 351 67 3 chr15 57460315 57460506 -43920015 + MARNA DNA Mariner 301 527 -59 2055 171 67 11 chr15 57461583 57462028 -43918493 + MER63C DNA MER1_type 45 514 -416 422 200 74 89 chr15 57462028 57462163 -43918358 - FLAM_A SINE Alu 0 133 1 824 168 15 0 chr15 57462166 57462297 -43918224 - AluJo/FLAM SINE Alu -169 133 1 1927 151 17 7 chr15 57462297 57462595 -43917926 - AluJo SINE Alu -11 301 1 376 213 0 0 chr15 57462598 57462659 -43917862 - AluJ/FLAM SINE Alu -241 61 1 * 1100 179 63 50 chr15 57462659 57463041 -43917480 + MER63C DNA MER1_type 505 928 -2 455 287 45 94 chr15 57465882 57466126 -43914395 + MIR SINE MIR 12 243 -19 201 276 197 0 chr15 57466177 57466253 -43914268 - L2 LINE L2 -9 3263 3173 638 314 57 30 chr15 57466525 57466891 -43913630 - L2 LINE L2 -559 2755 2380 946 159 0 20 chr15 57466923 57467074 -43913447 + AluJo SINE Alu 1 148 -164 1735 161 3 35 chr15 57467380 57467691 -43912830 - AluJo SINE Alu -11 301 1 249 327 53 35 chr15 57467771 57467884 -43912637 + L2 LINE L2 3133 3247 -25 768 264 111 5 chr15 57468036 57468252 -43912269 - MIR SINE MIR 0 262 24 250 303 34 25 chr15 57469443 57469562 -43910959 - 7SK RNA RNA -70 123 4 921 198 0 11 chr15 57469607 57469784 -43910737 - FRAM SINE Alu -1 175 1 241 350 50 0 chr15 57470543 57470643 -43909878 - MIR SINE MIR -111 151 47 22 35 0 0 chr15 57475089 57475118 -43905403 + AT_rich Low_complexity Low_complexity 1 29 0 257 235 56 112 chr15 57475474 57475653 -43904868 + MIR SINE MIR 94 262 0 199 327 182 0 chr15 57475656 57475766 -43904755 - L3b LINE CR1 -187 1396 1267 269 266 9 18 chr15 57476191 57476300 -43904221 + HAL1b LINE L1 1234 1341 -7 377 300 113 33 chr15 57476572 57476722 -43903799 + MER91A DNA MER1_type 1 162 -34 370 232 0 32 chr15 57477305 57477400 -43903121 - MIR SINE MIR -74 188 97 224 238 126 97 chr15 57477548 57477738 -43902783 + MIR SINE MIR 19 216 -46 243 0 0 0 chr15 57478330 57478357 -43902164 + (CA)n Simple_repeat Simple_repeat 1 27 0 373 175 36 26 chr15 57480977 57481317 -43899204 + (CA)n Simple_repeat Simple_repeat 1 343 0 371 190 33 54 chr15 57481337 57481521 -43899000 + (CA)n Simple_repeat Simple_repeat 1 180 0 379 192 39 37 chr15 57481541 57481898 -43898623 + (CA)n Simple_repeat Simple_repeat 1 358 0 294 135 48 40 chr15 57481991 57482117 -43898404 + (CA)n Simple_repeat Simple_repeat 1 127 0 663 216 165 16 chr15 57482405 57482599 -43897922 + MIR SINE MIR 39 261 -1 1863 131 0 11 chr15 57482612 57482886 -43897635 - AluJb SINE Alu -17 295 25 271 269 66 71 chr15 57484223 57484420 -43896101 + MARNA DNA Mariner 358 553 -33 696 289 76 55 chr15 57486357 57486457 -43894064 + MARNA DNA Mariner 133 229 -357 2223 100 3 10 chr15 57486457 57486758 -43893763 - AluSx SINE Alu -13 299 1 696 289 76 55 chr15 57486758 57487079 -43893442 + MARNA DNA Mariner 229 563 -23 2215 56 45 0 chr15 57487770 57488060 -43892461 - AluY SINE Alu 0 302 1 2198 109 0 0 chr15 57489146 57489427 -43891094 + AluSg1 SINE Alu 1 281 -28 244 0 0 0 chr15 57489427 57489454 -43891067 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 343 294 68 0 chr15 57490849 57490981 -43889540 - MIR3 SINE MIR -9 199 58 391 253 102 42 chr15 57491541 57491707 -43888814 + L2 LINE L2 3120 3295 -18 756 269 31 18 chr15 57492057 57492284 -43888237 + MIR SINE MIR 29 258 -4 313 270 9 90 chr15 57492602 57492682 -43887839 + MIR SINE MIR 1 68 -140 1184 194 125 109 chr15 57492682 57493234 -43887287 + MER34B LTR ERV1 2 562 -3 313 270 9 90 chr15 57493234 57493280 -43887241 + MIR SINE MIR 68 116 -92 23 0 0 0 chr15 57497122 57497145 -43883376 + AT_rich Low_complexity Low_complexity 1 23 0 21 104 0 0 chr15 57498373 57498450 -43882071 + AT_rich Low_complexity Low_complexity 1 77 0 1319 160 51 68 chr15 57499755 57500049 -43880472 + AluJb SINE Alu 2 290 -12 233 205 68 77 chr15 57500162 57500279 -43880242 - L1ME4a LINE L1 -2 6119 6004 2807 16 0 0 chr15 57500412 57500721 -43879800 - AluY SINE Alu -2 309 1 1827 130 42 88 chr15 57501051 57501283 -43879238 + LTR23 LTR ERV1 1 242 -225 2205 72 41 10 chr15 57501283 57501575 -43878946 - AluSq SINE Alu -12 301 1 1827 130 42 88 chr15 57501575 57501587 -43878934 + LTR23 LTR ERV1 242 253 -214 1749 136 0 124 chr15 57501587 57501785 -43878736 - AluJo SINE Alu -13 289 147 2109 87 0 37 chr15 57501785 57502084 -43878437 - AluSc SINE Alu -21 288 1 1749 136 0 124 chr15 57502084 57502215 -43878306 - AluJo SINE Alu -155 147 1 1827 130 42 88 chr15 57502215 57502425 -43878096 + LTR23 LTR ERV1 253 467 0 268 231 167 26 chr15 57502860 57502938 -43877583 + MIR SINE MIR 59 147 -115 521 283 61 24 chr15 57503472 57503684 -43876837 + MIR SINE MIR 31 250 -12 30 75 0 0 chr15 57506784 57506837 -43873684 + GC_rich Low_complexity Low_complexity 1 53 0 35 24 0 0 chr15 57506869 57506911 -43873610 + GC_rich Low_complexity Low_complexity 1 42 0 221 224 0 0 chr15 57508178 57508227 -43872294 + (CA)n Simple_repeat Simple_repeat 2 50 0 333 0 0 0 chr15 57508831 57508868 -43871653 + (CA)n Simple_repeat Simple_repeat 2 38 0 741 79 0 0 chr15 57508870 57508971 -43871550 + (TA)n Simple_repeat Simple_repeat 1 101 0 395 316 29 35 chr15 57508993 57509164 -43871357 + MIR3 SINE MIR 30 199 -9 287 267 193 27 chr15 57509288 57509438 -43871083 + MIR SINE MIR 26 200 -62 2889 157 2 5 chr15 57509654 57510088 -43870433 + Tigger2a DNA MER2_type 2 434 0 269 349 47 31 chr15 57510215 57510344 -43870177 - L2 LINE L2 -6 3266 3136 180 333 67 42 chr15 57510467 57510587 -43869934 - L2 LINE L2 -221 3051 2929 2356 105 0 0 chr15 57510587 57510893 -43869628 + AluSx SINE Alu 1 306 -6 656 308 54 14 chr15 57512195 57512416 -43868105 - MIR SINE MIR -25 237 8 24 53 0 0 chr15 57513213 57513251 -43867270 + AT_rich Low_complexity Low_complexity 1 38 0 2632 213 62 22 chr15 57514092 57514769 -43865752 - L1ME1 LINE L1 -4 6162 5459 2933 206 37 35 chr15 57514772 57515171 -43865350 + MER82 DNA MER2_type 3 405 -248 2349 73 17 10 chr15 57515171 57515473 -43865048 + AluSx SINE Alu 1 304 -8 2933 206 37 35 chr15 57515473 57515723 -43864798 + MER82 DNA MER2_type 405 653 0 422 310 35 69 chr15 57515819 57515993 -43864528 + L2 LINE L2 3105 3272 0 420 304 68 32 chr15 57516022 57516242 -43864279 + MIR SINE MIR 20 247 -15 199 210 247 37 chr15 57517526 57517607 -43862914 + L2 LINE L2 3175 3272 0 223 254 0 16 chr15 57518150 57518213 -43862308 + GA-rich Low_complexity Low_complexity 1 62 0 345 233 108 25 chr15 57519740 57519860 -43860661 - MIR SINE MIR -58 150 21 284 0 0 27 chr15 57521517 57521554 -43858967 + (CA)n Simple_repeat Simple_repeat 1 36 0 270 0 0 0 chr15 57522878 57522908 -43857613 + (A)n Simple_repeat Simple_repeat 1 30 0 200 138 0 0 chr15 57522944 57522973 -43857548 + L2 LINE L2 3267 3295 -18 216 0 0 0 chr15 57523980 57524004 -43856517 + (T)n Simple_repeat Simple_repeat 1 24 0 361 301 92 52 chr15 57524696 57524928 -43855593 + MIR SINE MIR 13 250 -12 405 0 0 0 chr15 57525015 57525060 -43855461 + (TG)n Simple_repeat Simple_repeat 2 46 0 407 256 76 104 chr15 57525953 57526203 -43854318 + MIR SINE MIR 2 244 -18 390 289 37 44 chr15 57528447 57528582 -43851939 + L2 LINE L2 3139 3272 0 201 121 0 0 chr15 57528946 57528979 -43851542 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 420 55 0 0 chr15 57528974 57529029 -43851492 + (GA)n Simple_repeat Simple_repeat 2 56 0 713 225 7 0 chr15 57531640 57531782 -43848739 + MIR SINE MIR 97 239 -23 201 211 0 0 chr15 57531834 57531872 -43848649 + L2 LINE L2 3256 3293 -20 24 0 0 0 chr15 57532517 57532541 -43847980 + AT_rich Low_complexity Low_complexity 1 24 0 203 347 14 0 chr15 57532598 57532670 -43847851 - L2 LINE L2 0 3272 3200 891 225 17 92 chr15 57532945 57533084 -43847437 + L1MC4 LINE L1 7736 7884 -158 2229 112 0 0 chr15 57533084 57533380 -43847141 + AluSq SINE Alu 1 296 -17 891 225 17 92 chr15 57533380 57533588 -43846933 + L1MC4 LINE L1 7884 8041 -1 1768 150 6 54 chr15 57533650 57533964 -43846557 + AluJb SINE Alu 1 299 -13 2076 132 0 0 chr15 57534047 57534335 -43846186 - AluSx SINE Alu -24 288 1 506 309 164 5 chr15 57534754 57534974 -43845547 - MIR SINE MIR -6 256 2 21 0 0 0 chr15 57535105 57535126 -43845395 + AT_rich Low_complexity Low_complexity 1 21 0 188 222 0 16 chr15 57535530 57535593 -43844928 + CT-rich Low_complexity Low_complexity 3 64 0 235 153 51 0 chr15 57535776 57535835 -43844686 + LTR66 LTR ERVL 380 441 -169 257 150 12 38 chr15 57535839 57535919 -43844602 + (TA)n Simple_repeat Simple_repeat 1 78 0 252 0 0 0 chr15 57536547 57536575 -43843946 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1340 284 30 5 chr15 57536662 57537063 -43843458 + L1MC4a LINE L1 5496 5906 -1902 276 30 0 0 chr15 57537725 57537758 -43842763 + (TTG)n Simple_repeat Simple_repeat 1 33 0 290 319 42 0 chr15 57537898 57538017 -43842504 - MIR SINE MIR -34 228 105 274 258 23 70 chr15 57538464 57538592 -43841929 - L2 LINE L2 -1 3312 3191 326 348 25 103 chr15 57539021 57539303 -43841218 + L2 LINE L2 2927 3186 -86 22 0 0 0 chr15 57539303 57539325 -43841196 + AT_rich Low_complexity Low_complexity 1 22 0 1586 196 119 5 chr15 57539325 57539702 -43840819 - L1MD3 LINE L1 -2 7993 7574 1004 217 9 13 chr15 57539702 57539928 -43840593 - AluJo SINE Alu -1 311 87 218 263 25 50 chr15 57539945 57540025 -43840496 + L2 LINE L2 3195 3272 0 362 235 154 51 chr15 57540377 57540528 -43839993 + L2 LINE L2 2986 3171 -142 1736 99 0 0 chr15 57540528 57540749 -43839772 - AluSc SINE Alu -5 304 84 362 235 154 51 chr15 57540749 57540831 -43839690 + L2 LINE L2 3171 3243 -70 255 273 50 30 chr15 57542132 57542231 -43838290 - MIR3 SINE MIR -53 155 55 2468 70 6 10 chr15 57542232 57542544 -43837977 - AluSx SINE Alu -1 311 1 2296 72 3 7 chr15 57543467 57543759 -43836762 - AluY SINE Alu -20 291 1 471 108 0 14 chr15 57543804 57543878 -43836643 - MER53 DNA DNA -1 188 116 * 532 117 175 0 chr15 57543816 57543919 -43836602 + MER53 DNA DNA 23 143 -46 23 0 0 0 chr15 57543944 57543967 -43836554 + AT_rich Low_complexity Low_complexity 1 23 0 195 42 0 0 chr15 57544223 57544247 -43836274 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr15 57544654 57544675 -43835846 + AT_rich Low_complexity Low_complexity 1 21 0 2284 97 0 0 chr15 57545752 57546052 -43834469 - AluSc SINE Alu -9 300 1 365 96 0 0 chr15 57547742 57547794 -43832727 + MADE1 DNA Mariner 1 52 -28 1082 262 94 37 chr15 57547991 57548533 -43831988 - L1ME4a LINE L1 -10 6111 5539 21 36 0 0 chr15 57548893 57548921 -43831600 + AT_rich Low_complexity Low_complexity 1 28 0 201 74 0 0 chr15 57549156 57549183 -43831338 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 229 214 34 34 chr15 57549658 57549747 -43830774 + L1ME4a LINE L1 5995 6083 -38 555 286 116 5 chr15 57551357 57551556 -43828965 + MIR SINE MIR 34 254 -8 1210 314 91 45 chr15 57551617 57552293 -43828228 + L2 LINE L2 2499 3229 -84 1838 158 7 10 chr15 57552293 57552596 -43827925 - AluJb SINE Alu -8 304 3 1210 314 91 45 chr15 57552596 57552681 -43827840 + L2 LINE L2 3229 3309 -4 203 319 17 59 chr15 57552672 57552761 -43827760 + L3b LINE CR1 1465 1549 -34 * 2332 98 0 3 chr15 57552761 57553057 -43827464 - AluSx SINE Alu -17 295 1 203 319 17 59 chr15 57553057 57553086 -43827435 + L3b LINE CR1 1549 1578 -5 532 337 151 26 chr15 57553381 57553838 -43826683 + L3 LINE CR1 940 1453 -124 1377 191 66 11 chr15 57553960 57554232 -43826289 + AluJo SINE Alu 7 293 -19 1629 154 59 11 chr15 57554236 57554509 -43826012 + AluSx SINE Alu 1 286 -26 192 77 0 0 chr15 57554512 57554538 -43825983 + (CATA)n Simple_repeat Simple_repeat 2 27 0 230 362 19 0 chr15 57556566 57556671 -43823850 + GA-rich Low_complexity Low_complexity 3 109 0 1755 100 116 4 chr15 57556765 57557024 -43823497 - AluSx SINE Alu -12 300 13 23 0 0 0 chr15 57557141 57557164 -43823357 + AT_rich Low_complexity Low_complexity 1 23 0 222 254 34 0 chr15 57557188 57557247 -43823274 + (CATA)n Simple_repeat Simple_repeat 1 61 0 344 363 22 7 chr15 57557578 57557713 -43822808 + L2 LINE L2 2954 3090 -182 256 228 89 44 chr15 57558108 57558252 -43822269 + MIR SINE MIR 34 192 -64 530 283 50 11 chr15 57562183 57562363 -43818158 - MIR SINE MIR -72 190 4 328 253 67 14 chr15 57563497 57563622 -43816899 + MIR SINE MIR 20 142 -66 560 298 95 44 chr15 57563648 57563900 -43816621 + L3 LINE CR1 1312 1576 -1 294 95 0 0 chr15 57564635 57564677 -43815844 + (TG)n Simple_repeat Simple_repeat 2 43 0 338 289 87 10 chr15 57564927 57565031 -43815490 - MIR SINE MIR -108 154 43 183 80 0 0 chr15 57565749 57565774 -43814747 + (CAAG)n Simple_repeat Simple_repeat 2 26 0 2334 168 59 30 chr15 57565891 57566362 -43814159 + MLT1D LTR MaLR 21 505 0 207 0 0 0 chr15 57566514 57566537 -43813984 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 196 318 0 16 chr15 57566881 57566944 -43813577 + L2 LINE L2 3249 3310 -3 321 295 134 7 chr15 57567483 57567632 -43812889 - MIR3 SINE MIR -6 202 35 227 235 29 44 chr15 57567704 57567772 -43812749 + LTR11 LTR ERV 412 478 -206 191 170 0 38 chr15 57568564 57568617 -43811904 + CT-rich Low_complexity Low_complexity 6 56 0 1941 119 91 0 chr15 57569414 57569699 -43810822 - AluSx SINE Alu -1 311 1 22 35 0 0 chr15 57569990 57570019 -43810502 + AT_rich Low_complexity Low_complexity 1 29 0 572 261 48 48 chr15 57571127 57571461 -43809060 - L1MC5 LINE L1 -77 7884 7551 1000 289 60 26 chr15 57574174 57574589 -43805932 + LTR16A LTR ERVL 16 444 -6 2074 138 3 0 chr15 57574801 57575099 -43805422 - AluSq SINE Alu -14 299 1 21 0 0 0 chr15 57576105 57576126 -43804395 + AT_rich Low_complexity Low_complexity 1 21 0 1924 128 62 0 chr15 57577031 57577320 -43803201 - AluSq SINE Alu -6 307 1 1546 172 3 60 chr15 57577513 57577832 -43802689 - AluJo SINE Alu -11 301 1 218 323 107 45 chr15 57577919 57578266 -43802255 - L2 LINE L2 -176 3096 2725 1860 166 3 13 chr15 57578957 57579270 -43801251 - AluJo SINE Alu -2 310 1 24 0 0 0 chr15 57579285 57579309 -43801212 + AT_rich Low_complexity Low_complexity 1 24 0 294 50 0 0 chr15 57580683 57580723 -43799798 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 367 20 82 0 chr15 57581099 57581148 -43799373 - MADE1 DNA Mariner 0 80 28 1995 153 0 0 chr15 57581546 57581841 -43798680 - AluSx SINE Alu -17 295 1 270 0 0 0 chr15 57582399 57582429 -43798092 + (TA)n Simple_repeat Simple_repeat 2 31 0 906 110 0 8 chr15 57582827 57582945 -43797576 + AluJo/FLAM SINE Alu 1 117 -185 995 94 0 0 chr15 57582948 57583075 -43797446 - AluSg/x SINE Alu -16 294 168 254 273 77 82 chr15 57584759 57584953 -43795568 - L2 LINE L2 -362 2952 2760 420 321 75 25 chr15 57585109 57585349 -43795172 + MER102a DNA MER1_type 71 322 -8 1949 137 3 13 chr15 57585377 57585705 -43794816 - AluSx SINE Alu 0 325 1 538 168 37 10 chr15 57585960 57586121 -43794400 - MER20 DNA MER1_type 0 219 1 1332 160 38 53 chr15 57587173 57587436 -43793085 + AluJo SINE Alu 47 305 -7 1661 175 21 3 chr15 57588330 57588485 -43792036 - AluJb SINE Alu -21 291 127 213 39 0 0 chr15 57588485 57588511 -43792010 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1661 175 21 3 chr15 57588511 57588641 -43791880 - AluJb SINE Alu -185 127 1 506 275 68 27 chr15 57588752 57588930 -43791591 + MIR3 SINE MIR 6 190 -18 342 292 156 0 chr15 57589584 57589738 -43790783 + MIR3 SINE MIR 20 197 -11 261 214 135 34 chr15 57590592 57590681 -43789840 - MIR SINE MIR -21 241 144 527 284 32 56 chr15 57591713 57591963 -43788558 + L2 LINE L2 3006 3249 -23 443 283 151 8 chr15 57592113 57592323 -43788198 + MIR SINE MIR 15 254 -8 719 267 40 53 chr15 57592627 57592874 -43787647 - MIR SINE MIR -12 250 7 332 206 176 0 chr15 57593563 57593665 -43786856 - L1ME3A LINE L1 -5 6165 6046 6767 194 36 23 chr15 57595299 57595353 -43785168 - Charlie1a DNA MER1_type -1311 1450 1398 2424 93 0 0 chr15 57595353 57595654 -43784867 + AluSx SINE Alu 1 301 -11 6767 194 36 23 chr15 57595654 57596757 -43783764 - Charlie1a DNA MER1_type -1363 1398 268 2405 74 0 13 chr15 57596757 57597056 -43783465 - AluY SINE Alu -14 297 3 6767 194 36 23 chr15 57597056 57597327 -43783194 - Charlie1a DNA MER1_type -2493 268 2 21 0 0 0 chr15 57600144 57600165 -43780356 + AT_rich Low_complexity Low_complexity 1 21 0 347 316 115 0 chr15 57600382 57600521 -43780000 - MIR3 SINE MIR -11 197 43 345 331 13 53 chr15 57600636 57600787 -43779734 + MER5B DNA MER1_type 29 173 -5 250 309 60 60 chr15 57600914 57601063 -43779458 + L2 LINE L2 3127 3275 -38 255 296 41 10 chr15 57601189 57601287 -43779234 + L2 LINE L2 3190 3290 -23 291 251 73 84 chr15 57601879 57602058 -43778463 + MER5B DNA MER1_type 1 177 -1 462 224 78 56 chr15 57602113 57602292 -43778229 + MER5A DNA MER1_type 7 189 0 196 189 81 0 chr15 57602620 57602657 -43777864 + L2 LINE L2 3265 3304 -9 858 370 71 6 chr15 57604283 57604452 -43776069 + L3 LINE CR1 1054 1211 -366 243 88 0 0 chr15 57604452 57604486 -43776035 + (TG)n Simple_repeat Simple_repeat 2 35 0 858 370 71 6 chr15 57604486 57604795 -43775726 + L3 LINE CR1 1211 1563 -14 208 162 189 27 chr15 57605515 57605589 -43774932 + MIR SINE MIR 106 191 -71 435 38 0 0 chr15 57606438 57606491 -43774030 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 330 87 0 0 chr15 57608164 57608210 -43772311 + (TC)n Simple_repeat Simple_repeat 1 46 0 24 0 0 0 chr15 57609298 57609322 -43771199 + GC_rich Low_complexity Low_complexity 1 24 0 30 59 0 0 chr15 57610338 57610389 -43770132 + GC_rich Low_complexity Low_complexity 1 51 0 242 210 16 0 chr15 57610474 57610536 -43769985 + (CCG)n Simple_repeat Simple_repeat 2 64 0 1563 91 5 0 chr15 57610785 57610984 -43769537 - AluSx SINE Alu -112 200 1 817 164 90 53 chr15 57610984 57611173 -43769348 + AluJo SINE Alu 101 296 -16 661 264 156 0 chr15 57611413 57611625 -43768896 + MIR SINE MIR 18 262 0 381 309 50 70 chr15 57611664 57611865 -43768656 + MIR SINE MIR 35 231 -31 260 277 0 0 chr15 57611890 57611955 -43768566 + (CTA)n Simple_repeat Simple_repeat 2 66 0 212 100 25 0 chr15 57616379 57616419 -43764102 + (CAA)n Simple_repeat Simple_repeat 3 43 0 195 146 0 0 chr15 57616639 57616680 -43763841 + (T)n Simple_repeat Simple_repeat 1 41 0 1997 77 0 18 chr15 57618866 57619213 -43761308 - AluY SINE Alu 0 342 1 36 0 0 0 chr15 57620073 57620109 -43760412 + AT_rich Low_complexity Low_complexity 1 36 0 212 83 83 0 chr15 57621192 57621228 -43759293 + T-rich Low_complexity Low_complexity 2 40 0 424 220 0 11 chr15 57621579 57621670 -43758851 + MER97c DNA MER1_type? 82 171 -919 237 233 0 58 chr15 57622241 57622344 -43758177 - L1M LINE L1 -2443 5365 5269 33 73 0 0 chr15 57622603 57622671 -43757850 + AT_rich Low_complexity Low_complexity 1 68 0 231 345 56 49 chr15 57624007 57624149 -43756372 + L2 LINE L2 2875 3017 -255 466 289 57 6 chr15 57624221 57624380 -43756141 + MER91A DNA MER1_type 6 172 -24 245 286 57 67 chr15 57624506 57624611 -43755910 + L2 LINE L2 3169 3272 0 549 292 62 0 chr15 57625384 57625562 -43754959 + MIR SINE MIR 3 191 -71 2281 77 0 20 chr15 57625564 57625864 -43754657 - AluSx SINE Alu -18 294 1 187 309 144 0 chr15 57625977 57626074 -43754447 + MIR SINE MIR 146 256 -6 333 0 0 0 chr15 57626459 57626496 -43754025 + (CA)n Simple_repeat Simple_repeat 2 38 0 221 136 0 23 chr15 57627192 57627236 -43753285 + (GAAA)n Simple_repeat Simple_repeat 1 43 0 249 263 90 83 chr15 57628037 57628193 -43752328 - L2 LINE L2 -1506 1808 1652 279 0 0 0 chr15 57629085 57629116 -43751405 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 366 136 8 6 chr15 57629833 57629954 -43750567 + MER53 DNA DNA 1 188 -1 268 227 13 0 chr15 57630351 57630409 -43750112 - MIR SINE MIR -56 152 91 412 294 27 59 chr15 57631171 57631358 -43749163 + MIR SINE MIR 32 212 -50 777 175 0 36 chr15 57631664 57631801 -43748720 + FLAM_A SINE Alu 1 132 -1 385 248 9 44 chr15 57632101 57632183 -43748338 + MIR3 SINE MIR 76 154 -54 1621 194 3 3 chr15 57632183 57632477 -43748044 - AluJo SINE Alu -18 294 1 385 248 9 44 chr15 57632477 57632507 -43748014 + MIR3 SINE MIR 154 184 -24 285 29 0 0 chr15 57632808 57632842 -43747679 + (CA)n Simple_repeat Simple_repeat 2 35 0 2153 111 0 10 chr15 57633500 57633798 -43746723 + AluSg SINE Alu 1 295 -15 301 226 24 36 chr15 57634058 57634142 -43746379 + MIR SINE MIR 67 149 -113 279 351 0 0 chr15 57638754 57638828 -43741693 + L2 LINE L2 3158 3231 -41 287 265 27 52 chr15 57639593 57639749 -43740772 + MIR SINE MIR 26 143 -65 8539 111 9 6 chr15 57639798 57641055 -43739466 - L1P LINE L1 -1381 4765 3505 628 237 56 28 chr15 57641125 57641340 -43739181 - L1MC5 LINE L1 -35 7926 7706 769 306 140 11 chr15 57642421 57642964 -43737557 - L2 LINE L2 -6 3307 2684 225 361 62 7 chr15 57643086 57643230 -43737291 + MIR3 SINE MIR 51 202 -6 687 271 78 48 chr15 57643259 57643714 -43736807 - MLT1J LTR MaLR 0 446 15 946 225 54 56 chr15 57643794 57644363 -43736158 - MLT1C LTR MaLR 0 467 1 463 299 43 12 chr15 57644671 57644835 -43735686 - MIR SINE MIR -74 188 20 23 68 0 0 chr15 57645434 57645478 -43735043 + AT_rich Low_complexity Low_complexity 1 44 0 358 250 0 9 chr15 57645490 57645598 -43734923 - L1ME4a LINE L1 -53 6068 5962 505 222 37 0 chr15 57645903 57646011 -43734510 - MIR SINE MIR -60 148 37 1721 139 0 15 chr15 57646098 57646365 -43734156 - AluSx SINE Alu -11 301 39 2494 46 0 0 chr15 57647736 57648078 -43732443 - AluY SINE Alu 0 342 1 1630 101 18 0 chr15 57648641 57648859 -43731662 + AluSg/x SINE Alu 87 308 -4 286 321 197 5 chr15 57649652 57649845 -43730676 - MIR SINE MIR -7 255 26 2839 130 122 17 chr15 57649860 57650337 -43730184 + MER1A DNA MER1_type 1 527 0 2289 95 3 7 chr15 57650622 57650918 -43729603 + AluSp SINE Alu 1 295 -18 240 272 83 41 chr15 57651331 57651500 -43729021 - MIR3 SINE MIR -30 178 3 230 291 76 71 chr15 57652628 57652838 -43727683 + Charlie8 DNA MER1_type 49 259 -2158 305 280 34 17 chr15 57654063 57654181 -43726340 + MIR SINE MIR 40 159 -103 2192 113 0 17 chr15 57654474 57654774 -43725747 - AluSx SINE Alu -17 295 1 2264 112 3 0 chr15 57654776 57655080 -43725441 - AluSx SINE Alu -7 305 1 270 284 83 9 chr15 57655307 57655416 -43725105 - MIR SINE MIR -61 147 31 538 247 146 0 chr15 57656444 57656602 -43723919 - MER5A DNA MER1_type 0 189 9 1449 135 82 4 chr15 57656927 57657172 -43723349 + MER21A LTR ERV1 1 264 -667 3065 172 61 11 chr15 57657177 57657705 -43722816 + MER21A LTR ERV1 376 929 -2 201 286 95 0 chr15 57657711 57657795 -43722726 + MIR SINE MIR 157 248 -14 209 122 20 61 chr15 57658036 57658085 -43722436 - L2 LINE L2 -2 3270 3224 1963 130 21 0 chr15 57658204 57658489 -43722032 - AluSx SINE Alu -1 311 21 205 86 29 0 chr15 57659439 57659474 -43721047 + (TG)n Simple_repeat Simple_repeat 1 36 0 617 245 47 82 chr15 57659537 57659880 -43720641 + L1MC5 LINE L1 7604 7934 -27 23 78 0 0 chr15 57663507 57663558 -43716963 + AT_rich Low_complexity Low_complexity 1 51 0 207 188 0 0 chr15 57664101 57664149 -43716372 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 246 313 40 20 chr15 57664158 57664257 -43716264 - L2 LINE L2 -10 3303 3203 671 256 92 0 chr15 57664678 57664873 -43715648 - MIR SINE MIR -10 252 40 1608 98 47 4 chr15 57665845 57666100 -43714421 - L1MA2 LINE L1 0 6304 6039 183 241 19 19 chr15 57666836 57666890 -43713631 - L2 LINE L2 -22 3291 3238 31 68 0 0 chr15 57669289 57669348 -43711173 + AT_rich Low_complexity Low_complexity 1 59 0 307 272 43 11 chr15 57669828 57669920 -43710601 + MIR SINE MIR 37 131 -77 982 104 31 31 chr15 57671312 57671475 -43709046 - L1PA13 LINE L1 -2 6161 5999 329 340 6 0 chr15 57673098 57673260 -43707261 + (CA)n Simple_repeat Simple_repeat 2 164 0 408 40 0 0 chr15 57674331 57674381 -43706140 + (GA)n Simple_repeat Simple_repeat 2 51 0 212 294 12 12 chr15 57674396 57674481 -43706040 + GA-rich Low_complexity Low_complexity 1 85 0 729 170 182 0 chr15 57674598 57674757 -43705764 + MER5A DNA MER1_type 1 188 -1 662 112 0 0 chr15 57677186 57677275 -43703246 + 5S rRNA rRNA 2 90 -31 1043 162 22 5 chr15 57677838 57678023 -43702498 + MER5A DNA MER1_type 2 189 0 753 184 54 84 chr15 57678877 57679116 -43701405 + ORSL DNA AcHobo 1 232 -43 1917 180 88 28 chr15 57679123 57679556 -43700965 - MLT1C LTR MaLR -7 460 2 1811 164 10 3 chr15 57679707 57679999 -43700522 + AluJb SINE Alu 1 294 -18 201 180 0 0 chr15 57682507 57682557 -43697964 + (TA)n Simple_repeat Simple_repeat 2 51 0 3034 153 31 31 chr15 57682774 57683382 -43697139 - L1MA8 LINE L1 -2 6289 5682 2257 107 24 0 chr15 57683433 57683731 -43696790 - AluSx SINE Alu -7 305 1 372 282 8 8 chr15 57684891 57685015 -43695506 + MIR SINE MIR 35 158 -104 387 273 12 13 chr15 57689396 57689516 -43691005 - MER5A DNA MER1_type -3 178 57 1871 163 0 7 chr15 57690162 57690451 -43690070 + AluJb SINE Alu 1 287 -25 710 268 73 0 chr15 57690455 57690660 -43689861 - MIR SINE MIR -4 258 39 217 191 0 21 chr15 57691808 57691855 -43688666 + (TAA)n Simple_repeat Simple_repeat 3 48 0 365 285 75 70 chr15 57691858 57692086 -43688435 - MIR SINE MIR -21 241 13 272 270 119 22 chr15 57692095 57692255 -43688266 - MIR SINE MIR -54 208 36 216 283 67 67 chr15 57693565 57693685 -43686836 + MIR3 SINE MIR 15 134 -74 337 240 124 31 chr15 57693756 57693885 -43686636 - L2 LINE L2 0 3313 3173 349 346 57 9 chr15 57693897 57694108 -43686413 - MIR SINE MIR -19 243 23 213 271 103 56 chr15 57694289 57694396 -43686125 - MIR SINE MIR -64 198 87 426 245 99 40 chr15 57695105 57695256 -43685265 - MIR3 SINE MIR -12 196 37 5784 26 0 1 chr15 57695399 57696059 -43684462 - L1PA4 LINE L1 0 6155 5497 236 309 12 12 chr15 57696068 57696152 -43684369 + L2 LINE L2 3187 3270 -2 228 67 0 0 chr15 57696316 57696346 -43684175 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 377 250 50 10 chr15 57696349 57696449 -43684072 - L2 LINE L2 -16 3297 3194 332 303 10 0 chr15 57697869 57697968 -43682553 + L2 LINE L2 2923 3022 -291 260 271 14 0 chr15 57698080 57698150 -43682371 + L2 LINE L2 3242 3312 -1 219 315 8 8 chr15 57698169 57698296 -43682225 + L2 LINE L2 2068 2194 -1120 218 264 121 22 chr15 57698492 57698583 -43681938 + L2 LINE L2 2215 2314 -1000 211 259 148 0 chr15 57698580 57698634 -43681887 + L2 LINE L2 3190 3251 -21 * 383 266 39 39 chr15 57699331 57699459 -43681062 - MIR SINE MIR -65 143 16 246 81 0 0 chr15 57701264 57701301 -43679220 + (CA)n Simple_repeat Simple_repeat 2 38 0 258 290 0 0 chr15 57701333 57701402 -43679119 - MER116 DNA Mariner -11 69 1 295 59 20 20 chr15 57702948 57702999 -43677522 + (CA)n Simple_repeat Simple_repeat 2 52 0 261 0 0 0 chr15 57703482 57703511 -43677010 + (T)n Simple_repeat Simple_repeat 1 29 0 577 298 40 10 chr15 57704654 57704852 -43675669 + MIR3 SINE MIR 2 205 -3 23 54 0 0 chr15 57706744 57706781 -43673740 + AT_rich Low_complexity Low_complexity 1 37 0 597 328 31 0 chr15 57707389 57707581 -43672940 + Charlie8 DNA MER1_type 1 198 -2219 275 335 59 0 chr15 57707772 57707924 -43672597 - MIR SINE MIR -50 212 52 338 381 62 30 chr15 57708008 57708410 -43672111 + L2 LINE L2 2831 3245 -27 963 192 0 0 chr15 57711029 57711201 -43669320 - FAM SINE Alu -3 172 1 1126 144 5 0 chr15 57711305 57711492 -43669029 - MER53 DNA DNA -1 188 1 189 357 48 34 chr15 57711688 57711957 -43668564 + L2 LINE L2 3031 3303 -10 199 264 0 0 chr15 57712177 57712230 -43668291 + MIR SINE MIR 92 144 -118 27 0 0 0 chr15 57712445 57712472 -43668049 + AT_rich Low_complexity Low_complexity 1 27 0 1683 80 0 4 chr15 57712472 57712697 -43667824 - L1PA6 LINE L1 0 6154 5931 566 276 29 0 chr15 57713739 57713909 -43666612 - L1MC4 LINE L1 -111 7931 7757 195 326 95 0 chr15 57714033 57714128 -43666393 - MIR SINE MIR -57 151 48 581 268 51 65 chr15 57717216 57717492 -43663029 + L2 LINE L2 3042 3313 0 440 208 42 0 chr15 57717758 57717854 -43662667 + MIR SINE MIR 33 132 -76 243 0 0 0 chr15 57718638 57718665 -43661856 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 227 325 49 8 chr15 57719407 57719530 -43660991 - MIR SINE MIR -45 217 90 379 295 58 35 chr15 57720604 57720777 -43659744 + MER5B DNA MER1_type 2 178 0 214 333 49 0 chr15 57721156 57721237 -43659284 - L2 LINE L2 -16 3256 3172 564 322 5 0 chr15 57721295 57721494 -43659027 - MIR SINE MIR -1 261 62 2353 92 0 0 chr15 57722359 57722662 -43657859 + AluSc SINE Alu 1 303 -6 516 254 101 56 chr15 57723142 57723587 -43656934 + L1ME LINE L1 5374 5834 -317 738 134 63 0 chr15 57723783 57723925 -43656596 - L1MA8 LINE L1 -5 6286 6136 221 250 112 14 chr15 57725094 57725193 -43655328 + MIR SINE MIR 40 146 -66 197 369 28 28 chr15 57725971 57726147 -43654374 + L2 LINE L2 2788 2963 -351 217 286 151 25 chr15 57726298 57726417 -43654104 + L2 LINE L2 3180 3313 0 228 290 0 0 chr15 57726629 57726698 -43653823 + MIR SINE MIR 88 156 -106 191 328 16 0 chr15 57727999 57728063 -43652458 - L2 LINE L2 -22 3250 3186 454 296 80 65 chr15 57728291 57728615 -43651906 - L2 LINE L2 -7 3265 2937 246 232 214 9 chr15 57728615 57728727 -43651794 - L2 LINE L2 -1 3271 3137 190 236 18 0 chr15 57728755 57728810 -43651711 - L2 LINE L2 -286 2986 2931 327 165 38 51 chr15 57730004 57730083 -43650438 - MER69 DNA AcHobo 0 2526 2449 * 747 243 0 0 chr15 57730077 57730225 -43650296 - MER69 DNA AcHobo -2378 148 1 360 326 5 42 chr15 57730569 57730759 -43649762 - MER5A DNA MER1_type 0 189 7 275 201 147 71 chr15 57731529 57731675 -43648846 + MIR SINE MIR 13 175 -66 1938 262 73 46 chr15 57731746 57733264 -43647257 + L1ME LINE L1 43 1659 -4602 444 289 16 0 chr15 57733488 57733609 -43646912 + MIR3 SINE MIR 78 200 -8 275 205 36 116 chr15 57736278 57736390 -43644131 + MIR SINE MIR 86 188 -74 2345 164 29 56 chr15 57736878 57737396 -43643125 + L1MB4 LINE L1 5440 5943 -231 230 156 47 0 chr15 57737404 57737468 -43643053 + (TA)n Simple_repeat Simple_repeat 2 68 0 182 61 0 30 chr15 57737468 57737501 -43643020 + (TTA)n Simple_repeat Simple_repeat 2 33 0 903 198 121 0 chr15 57737505 57737712 -43642809 + L1MB4 LINE L1 5949 6180 0 219 36 0 0 chr15 57738628 57738656 -43641865 + (CA)n Simple_repeat Simple_repeat 2 29 0 375 290 35 41 chr15 57739064 57739209 -43641312 + MIR SINE MIR 8 151 -111 28 0 0 0 chr15 57739926 57739954 -43640567 + AT_rich Low_complexity Low_complexity 1 28 0 734 157 5 110 chr15 57740423 57740614 -43639907 - MER63B DNA MER1_type -265 171 1 190 370 76 66 chr15 57741106 57741395 -43639126 + L2 LINE L2 2976 3267 -5 219 314 9 9 chr15 57742352 57742457 -43638064 - MIR SINE MIR -63 145 41 207 313 68 25 chr15 57742525 57742688 -43637833 + MIR SINE MIR 21 190 -72 310 185 25 0 chr15 57742953 57743034 -43637487 + (TG)n Simple_repeat Simple_repeat 2 84 0 23 0 0 0 chr15 57743338 57743361 -43637160 + AT_rich Low_complexity Low_complexity 1 23 0 253 248 316 0 chr15 57743981 57744098 -43636423 + MIR3 SINE MIR 48 201 -7 2334 92 10 0 chr15 57744394 57744700 -43635821 + AluSp SINE Alu 1 309 -4 446 312 59 14 chr15 57744716 57744937 -43635584 - MIR SINE MIR -24 238 8 470 256 156 6 chr15 57745812 57746024 -43634497 + MIR SINE MIR 17 256 -6 284 347 104 14 chr15 57746104 57746248 -43634273 + MIR3 SINE MIR 29 185 -23 287 255 62 42 chr15 57746997 57747167 -43633354 - MIR SINE MIR -70 192 20 6754 164 29 2 chr15 57747289 57747706 -43632815 + L1PB1 LINE L1 3981 4385 -1766 252 0 0 0 chr15 57747706 57747734 -43632787 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 6754 164 29 2 chr15 57747734 57749089 -43631432 + L1PB1 LINE L1 4385 5790 -361 26 50 0 0 chr15 57749090 57749130 -43631391 + AT_rich Low_complexity Low_complexity 1 40 0 2455 86 7 87 chr15 57749146 57749565 -43630956 + L1PB1 LINE L1 5767 6150 -1 3801 249 94 27 chr15 57749745 57751948 -43628573 - HAL1 LINE L1 -1 2506 8 580 284 53 0 chr15 57752439 57752608 -43627913 + MIR SINE MIR 14 191 -71 1734 172 0 20 chr15 57752614 57752911 -43627610 + AluJo SINE Alu 6 296 -16 183 167 0 0 chr15 57752963 57752999 -43627522 + L2 LINE L2 3221 3256 -16 261 236 82 36 chr15 57753546 57753656 -43626865 - MLT1J1 LTR MaLR -308 138 24 227 355 32 8 chr15 57754141 57754265 -43626256 - MIR SINE MIR -50 212 86 242 275 187 0 chr15 57754790 57754881 -43625640 + L2 LINE L2 3201 3308 -5 206 321 0 37 chr15 57755441 57755550 -43624971 + MIR SINE MIR 83 187 -75 22 0 0 0 chr15 57756182 57756204 -43624317 + AT_rich Low_complexity Low_complexity 1 22 0 264 107 0 89 chr15 57756259 57756428 -43624093 + (TA)n Simple_repeat Simple_repeat 1 154 0 295 141 0 73 chr15 57756463 57756929 -43623592 + (TATATG)n Simple_repeat Simple_repeat 1 431 0 845 25 0 2 chr15 57756947 57757091 -43623430 + L1PA4 LINE L1 6028 6169 0 653 263 5 5 chr15 57757116 57757325 -43623196 - L1M4 LINE L1 -3659 2487 2279 905 120 108 6 chr15 57757332 57757499 -43623022 - L1MA7 LINE L1 0 6291 6108 1021 129 25 6 chr15 57757499 57757662 -43622859 - Tigger1 DNA MER2_type -2 2416 2251 831 137 78 13 chr15 57757665 57757818 -43622703 - Tigger1 DNA MER2_type -2255 163 1 410 134 27 130 chr15 57757818 57758008 -43622513 - L1MA6 LINE L1 -175 6122 5953 206 205 0 0 chr15 57758197 57758236 -43622285 + L2 LINE L2 3271 3309 -4 606 88 0 0 chr15 57758511 57758591 -43621930 + MADE1 DNA Mariner 1 80 0 379 234 75 10 chr15 57758697 57758870 -43621651 - MIR SINE MIR -56 206 24 498 33 0 0 chr15 57760076 57760136 -43620385 + (CA)n Simple_repeat Simple_repeat 2 61 0 261 273 124 25 chr15 57761891 57762052 -43618469 + L2 LINE L2 3130 3306 -7 * 627 264 8 73 chr15 57762037 57762283 -43618238 - MIR SINE MIR -10 252 23 201 354 20 0 chr15 57762344 57762443 -43618078 - MIR3 SINE MIR -3 205 105 364 320 33 0 chr15 57762534 57762687 -43617834 - MIR3 SINE MIR -15 193 36 453 158 34 118 chr15 57763036 57763200 -43617321 + MER5B DNA MER1_type 21 164 -14 187 167 28 0 chr15 57763241 57763277 -43617244 + MER5A DNA MER1_type 39 75 -114 599 179 19 13 chr15 57763299 57763455 -43617066 + CT-rich Low_complexity Low_complexity 4 160 0 259 141 31 31 chr15 57763475 57763539 -43616982 + CT-rich Low_complexity Low_complexity 1 64 0 858 194 0 0 chr15 57763539 57763683 -43616838 - FRAM SINE Alu -25 151 8 289 288 98 44 chr15 57763699 57763904 -43616617 + L2 LINE L2 3098 3313 0 735 234 0 23 chr15 57764888 57765063 -43615458 + MIR SINE MIR 37 207 -55 223 286 52 0 chr15 57766050 57766127 -43614394 + MIR3 SINE MIR 127 207 -1 225 171 24 0 chr15 57766572 57766613 -43613908 + GA-rich Low_complexity Low_complexity 2 43 0 378 0 0 0 chr15 57767075 57767117 -43613404 + (TC)n Simple_repeat Simple_repeat 2 43 0 220 242 0 32 chr15 57770249 57770311 -43610210 + L2 LINE L2 3254 3313 0 24 32 0 0 chr15 57770482 57770513 -43610008 + AT_rich Low_complexity Low_complexity 1 31 0 831 231 131 3 chr15 57770534 57770816 -43609705 - L1ME4a LINE L1 -14 6107 5790 198 167 0 0 chr15 57771251 57771287 -43609234 + (TG)n Simple_repeat Simple_repeat 1 36 0 450 304 24 23 chr15 57772390 57772566 -43607955 + MLT1J LTR MaLR 5 222 -271 442 224 31 10 chr15 57772599 57772697 -43607824 - MER81 DNA DNA -11 103 4 334 284 108 54 chr15 57772765 57772913 -43607608 + MLT1J LTR MaLR 318 473 -38 2510 61 3 0 chr15 57773228 57773522 -43606999 - AluY SINE Alu -16 295 1 2177 112 0 0 chr15 57773527 57773813 -43606708 - AluSx SINE Alu -4 308 23 213 343 78 0 chr15 57774096 57774198 -43606323 + MIR3 SINE MIR 3 112 -96 201 267 116 12 chr15 57775891 57775977 -43604544 - MIR SINE MIR -50 212 118 974 116 0 0 chr15 57777357 57777486 -43603035 - FLAM_C SINE Alu -9 134 6 336 48 0 0 chr15 57779163 57779205 -43601316 + (CA)n Simple_repeat Simple_repeat 2 43 0 2286 66 0 33 chr15 57779205 57779508 -43601013 - AluY SINE Alu -18 293 1 201 157 59 20 chr15 57779508 57779548 -43600973 - L2 LINE L2 -6 3307 3261 329 64 0 0 chr15 57779726 57779773 -43600748 + MADE1 DNA Mariner 34 80 0 199 361 0 12 chr15 57779783 57779866 -43600655 - MIR SINE MIR -86 122 41 273 185 0 0 chr15 57781734 57781799 -43598722 + CT-rich Low_complexity Low_complexity 1 65 0 183 352 116 19 chr15 57782740 57782956 -43597565 - MIR SINE MIR -13 249 13 377 266 51 38 chr15 57783632 57783790 -43596731 - MIR3 SINE MIR -29 179 20 244 337 50 70 chr15 57784317 57784617 -43595904 + L2 LINE L2 2944 3237 -35 195 42 0 0 chr15 57784713 57784737 -43595784 + (TTG)n Simple_repeat Simple_repeat 2 25 0 201 39 0 0 chr15 57785339 57785365 -43595156 + (TG)n Simple_repeat Simple_repeat 2 27 0 348 256 61 55 chr15 57785870 57786034 -43594487 + MIR SINE MIR 56 220 -42 2353 77 3 0 chr15 57786058 57786357 -43594164 - AluY SINE Alu -11 300 1 206 176 0 0 chr15 57786412 57786446 -43594075 - MIR SINE MIR -85 123 90 1495 199 16 9 chr15 57787872 57788193 -43592328 + MER33 DNA MER1_type 2 324 0 185 208 0 0 chr15 57788471 57788519 -43592002 + L2 LINE L2 3012 3059 -254 2125 167 136 11 chr15 57788519 57788857 -43591664 + MLT1D LTR MaLR 1 410 -95 2208 141 123 5 chr15 57788857 57789240 -43591281 - MSTA LTR MaLR 0 428 1 2125 167 136 11 chr15 57789240 57789350 -43591171 + MLT1D LTR MaLR 410 505 0 438 258 6 55 chr15 57789463 57789626 -43590895 + L2 LINE L2 3158 3312 -1 667 204 74 49 chr15 57789928 57790090 -43590431 + MER63A DNA MER1_type 1 166 -44 489 281 106 15 chr15 57790721 57790920 -43589601 + MIR SINE MIR 35 251 -11 252 143 0 0 chr15 57792019 57792075 -43588446 + (TG)n Simple_repeat Simple_repeat 1 56 0 377 278 28 61 chr15 57792674 57792854 -43587667 + MIR SINE MIR 79 252 -10 252 286 29 67 chr15 57794067 57794251 -43586270 + MIR SINE MIR 15 190 -72 2183 92 7 0 chr15 57794298 57794601 -43585920 + AluSc SINE Alu 5 309 0 2072 97 14 7 chr15 57795923 57796227 -43584294 - AluSg SINE Alu 0 306 1 241 299 39 47 chr15 57796268 57796395 -43584126 + MER5A DNA MER1_type 52 177 -12 415 171 38 19 chr15 57798125 57798230 -43582291 - MIR3 SINE MIR -1 207 101 233 248 149 33 chr15 57798257 57798378 -43582143 + MIR SINE MIR 1 135 -127 297 0 0 0 chr15 57799005 57799038 -43581483 + (CA)n Simple_repeat Simple_repeat 2 34 0 357 146 0 203 chr15 57799653 57799776 -43580745 + MER5A DNA MER1_type 9 106 -83 780 176 69 25 chr15 57799776 57799935 -43580586 - FRAM SINE Alu -1 175 10 236 122 0 20 chr15 57799940 57800017 -43580504 - FLAM_A SINE Alu 0 160 85 244 250 0 42 chr15 57801067 57801139 -43579382 - L2 LINE L2 -3 3269 3201 226 227 15 15 chr15 57801669 57801735 -43578786 - MIR SINE MIR -38 224 159 708 167 9 0 chr15 57801851 57801965 -43578556 - FLAM_A SINE Alu -18 115 1 306 262 76 44 chr15 57803423 57803567 -43576954 - MIR SINE MIR -67 141 33 455 274 0 0 chr15 57803905 57804022 -43576499 + MIR SINE MIR 112 228 -34 2303 111 0 0 chr15 57804120 57804417 -43576104 - AluSg SINE Alu -13 297 1 487 261 76 6 chr15 57805503 57805660 -43574861 + MIR3 SINE MIR 39 206 -2 2081 143 84 10 chr15 57806268 57806659 -43573862 - L1MA4 LINE L1 -29 6271 5852 2264 201 88 117 chr15 57806682 57807133 -43573388 + MER21B LTR ERV1 12 474 -389 438 69 0 0 chr15 57807133 57807191 -43573330 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 1745 138 0 0 chr15 57807192 57807446 -43573075 - AluSx SINE Alu -26 286 33 2264 201 88 117 chr15 57807446 57807798 -43572723 + MER21B LTR ERV1 473 794 -69 301 252 176 0 chr15 57808473 57808592 -43571929 + L3 LINE CR1 1341 1480 -97 276 289 96 0 chr15 57808608 57808712 -43571809 + MIR SINE MIR 117 230 -32 204 296 34 45 chr15 57810495 57810583 -43569938 - L2 LINE L2 -4 3268 3182 1601 148 4 8 chr15 57812079 57812343 -43568178 + L1MD3 LINE L1 7731 7993 -2 483 60 0 0 chr15 57813537 57813604 -43566917 + (TG)n Simple_repeat Simple_repeat 1 67 0 475 241 56 0 chr15 57814596 57814704 -43565817 - L2 LINE L2 -9 3304 3191 840 255 37 9 chr15 57814707 57814923 -43565598 - MER58A DNA MER1_type -1 223 2 441 315 103 13 chr15 57815065 57815297 -43565224 + MIR SINE MIR 7 259 -3 180 200 0 0 chr15 57815303 57815348 -43565173 + (CAA)n Simple_repeat Simple_repeat 2 46 0 216 229 0 0 chr15 57815348 57815396 -43565125 - MIR SINE MIR -83 125 78 504 269 39 0 chr15 57815419 57815549 -43564972 + L2 LINE L2 3174 3308 -5 1717 84 46 0 chr15 57817168 57817407 -43563114 + L1PA13 LINE L1 5910 6159 -4 220 333 0 23 chr15 57817627 57817714 -43562807 + L2 LINE L2 3188 3272 0 22 0 0 0 chr15 57818042 57818064 -43562457 + AT_rich Low_complexity Low_complexity 1 22 0 2281 78 16 56 chr15 57818347 57818669 -43561852 + AluY SINE Alu 1 309 -2 552 261 37 65 chr15 57819540 57819755 -43560766 + MIR SINE MIR 48 256 -6 2165 96 14 0 chr15 57820658 57820940 -43559581 + AluSc SINE Alu 3 288 -21 230 164 18 0 chr15 57821912 57821967 -43558554 + GA-rich Low_complexity Low_complexity 2 57 0 1232 201 5 9 chr15 57822528 57822742 -43557779 + MER20 DNA MER1_type 7 219 0 399 21 0 0 chr15 57822934 57822982 -43557539 + (CA)n Simple_repeat Simple_repeat 2 49 0 1913 106 0 25 chr15 57823179 57823453 -43557068 + AluSx SINE Alu 41 307 -5 282 56 0 0 chr15 57823453 57823489 -43557032 + (GA)n Simple_repeat Simple_repeat 1 36 0 233 229 0 0 chr15 57823725 57823773 -43556748 + L1ME LINE L1 5782 5829 -292 338 273 83 0 chr15 57823790 57823911 -43556610 + L2 LINE L2 3182 3312 -1 204 40 0 0 chr15 57824492 57824517 -43556004 + (GA)n Simple_repeat Simple_repeat 2 26 0 204 277 0 15 chr15 57824837 57824902 -43555619 + GA-rich Low_complexity Low_complexity 1 64 0 1681 271 71 21 chr15 57825353 57825873 -43554648 + MLT1H1 LTR MaLR 1 546 -9 441 305 37 24 chr15 57826018 57826182 -43554339 + MIR SINE MIR 45 210 -52 294 29 0 0 chr15 57827439 57827474 -43553047 + (GA)n Simple_repeat Simple_repeat 1 35 0 330 169 0 0 chr15 57828754 57828819 -43551702 + (CA)n Simple_repeat Simple_repeat 1 65 0 201 224 61 0 chr15 57829576 57829625 -43550896 - MIR3 SINE MIR -47 161 110 330 273 172 8 chr15 57830460 57830588 -43549933 - MIR3 SINE MIR -6 202 54 257 236 18 0 chr15 57831569 57831624 -43548897 + (TG)n Simple_repeat Simple_repeat 1 56 0 243 333 71 37 chr15 57831961 57832255 -43548266 + L2 LINE L2 2809 3112 -160 399 261 28 35 chr15 57832275 57832417 -43548104 + MER117 DNA MER1_type 5 145 -52 353 309 8 8 chr15 57832453 57832576 -43547945 - MIR3 SINE MIR -52 156 34 22 0 0 0 chr15 57833899 57833921 -43546600 + AT_rich Low_complexity Low_complexity 1 22 0 552 333 5 11 chr15 57834068 57834257 -43546264 - MIR3 SINE MIR -1 207 20 868 165 34 6 chr15 57834897 57835073 -43545448 - MER5A DNA MER1_type -8 181 1 29 0 0 0 chr15 57835921 57835950 -43544571 + AT_rich Low_complexity Low_complexity 1 29 0 1328 191 93 18 chr15 57838527 57838698 -43541823 - AluJo SINE Alu -13 299 98 396 0 0 0 chr15 57838698 57838742 -43541779 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1328 191 93 18 chr15 57838742 57838848 -43541673 - AluJo SINE Alu -214 98 1 266 284 10 29 chr15 57840350 57840452 -43540069 - MIR SINE MIR -117 145 46 2370 231 24 0 chr15 57840615 57841109 -43539412 - MER119 DNA MER1_type -73 510 5 21 36 0 0 chr15 57841362 57841390 -43539131 + AT_rich Low_complexity Low_complexity 1 28 0 543 253 136 0 chr15 57841753 57841907 -43538614 + MER63A DNA MER1_type 9 183 -27 505 278 40 53 chr15 57845951 57846178 -43534343 - MIR SINE MIR -29 233 10 215 158 0 35 chr15 57846188 57846245 -43534276 + (CAT)n Simple_repeat Simple_repeat 2 56 0 274 296 0 0 chr15 57846247 57846318 -43534203 - MIR SINE MIR -112 150 80 306 296 77 18 chr15 57846452 57846621 -43533900 + MIR3 SINE MIR 16 194 -14 209 114 45 23 chr15 57847939 57847983 -43532538 + T-rich Low_complexity Low_complexity 4 48 0 327 312 84 26 chr15 57849631 57849785 -43530736 - MIR SINE MIR -66 196 34 1657 133 24 109 chr15 57849986 57850325 -43530196 - AluYb8 SINE Alu -8 310 1 1698 144 32 58 chr15 57850787 57851100 -43529421 - AluSx SINE Alu -7 305 1 1539 173 3 53 chr15 57851219 57851551 -43528970 + AluJo SINE Alu 1 317 0 2295 98 0 0 chr15 57851564 57851893 -43528628 + AluY SINE Alu 2 330 0 404 234 22 73 chr15 57851958 57852095 -43528426 - L1MB7 LINE L1 0 6184 6055 218 307 105 0 chr15 57853038 57853152 -43527369 + L2 LINE L2 3112 3237 -35 279 315 45 0 chr15 57853591 57853680 -43526841 + L2 LINE L2 3221 3313 0 189 365 10 10 chr15 57853829 57853925 -43526596 - MIR SINE MIR -147 115 20 240 219 55 0 chr15 57854225 57854298 -43526223 + MIR3 SINE MIR 91 167 -41 879 203 21 31 chr15 57854309 57854501 -43526020 + MER3 DNA MER1_type 17 206 -3 530 261 136 10 chr15 57854545 57854744 -43525777 + MIR SINE MIR 19 242 -20 437 168 17 173 chr15 57855395 57855568 -43524953 + MER5B DNA MER1_type 25 170 -8 416 226 8 83 chr15 57856839 57856972 -43523549 - MIR SINE MIR -70 192 70 272 275 1 38 chr15 57858102 57858223 -43522298 - MIR SINE MIR -60 148 30 243 122 0 0 chr15 57858988 57859037 -43521484 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 2063 260 42 2 chr15 57859939 57860485 -43520036 + L1ME3A LINE L1 5603 6170 0 438 271 79 17 chr15 57860492 57860669 -43519852 + MIR SINE MIR 50 237 -25 443 228 108 80 chr15 57860669 57860939 -43519582 - L1MC5 LINE L1 -15 7946 7660 2115 131 65 0 chr15 57860939 57861290 -43519231 + L1MC1 LINE L1 5960 6333 0 443 228 108 80 chr15 57861290 57861418 -43519103 - L1MC5 LINE L1 -301 7660 7537 317 238 24 24 chr15 57862147 57862231 -43518290 + L2 LINE L2 3188 3271 -1 180 217 22 0 chr15 57863370 57863416 -43517105 + MIR SINE MIR 86 132 -130 2245 119 0 0 chr15 57863594 57863942 -43516579 + AluSx SINE Alu 1 348 0 231 326 12 12 chr15 57864473 57864559 -43515962 + MIR3 SINE MIR 102 187 -21 181 322 11 33 chr15 57864570 57864660 -43515861 + L2 LINE L2 3223 3310 -3 474 297 141 15 chr15 57865322 57865777 -43514744 + L1ME4a LINE L1 5552 6063 -58 26 50 0 0 chr15 57865824 57865864 -43514657 + AT_rich Low_complexity Low_complexity 1 40 0 2082 120 0 4 chr15 57866296 57866600 -43513921 + AluSx SINE Alu 9 311 0 204 305 221 0 chr15 57866635 57866766 -43513755 - MIR3 SINE MIR -35 173 14 485 310 8 0 chr15 57867407 57867536 -43512985 - MIR3 SINE MIR -21 187 58 186 189 0 0 chr15 57867724 57867761 -43512760 + T-rich Low_complexity Low_complexity 1 37 0 356 273 7 58 chr15 57868545 57868684 -43511837 - MER5A DNA MER1_type -6 183 52 956 184 11 5 chr15 57868772 57868957 -43511564 + MER3 DNA MER1_type 16 201 -8 196 308 47 28 chr15 57871819 57871926 -43508595 + MIR SINE MIR 25 133 -129 198 333 89 33 chr15 57872061 57872274 -43508247 + L2 LINE L2 2825 3049 -223 494 179 8 119 chr15 57873129 57873263 -43507258 - MER5A DNA MER1_type 0 189 71 288 0 0 0 chr15 57873263 57873295 -43507226 + (TTG)n Simple_repeat Simple_repeat 2 33 0 585 206 0 40 chr15 57873297 57873423 -43507098 - FLAM_C SINE Alu -10 133 13 552 136 0 0 chr15 57873438 57873519 -43507002 - MER5A DNA MER1_type -108 81 1 503 186 26 9 chr15 57873746 57873859 -43506662 - MIR SINE MIR -23 239 125 192 200 0 0 chr15 57873862 57873902 -43506619 + L2 LINE L2 3233 3272 0 21 0 0 0 chr15 57874251 57874272 -43506249 + AT_rich Low_complexity Low_complexity 1 21 0 531 231 210 31 chr15 57875796 57875991 -43504530 - MIR SINE MIR -1 261 32 616 296 14 19 chr15 57976227 57976443 -43404078 + MIR SINE MIR 46 260 -2 261 244 11 44 chr15 57976867 57976957 -43403564 - MIR SINE MIR -85 123 37 192 290 140 45 chr15 57978386 57978607 -43401914 - L2 LINE L2 -219 3053 2812 505 262 16 0 chr15 57980538 57980664 -43399857 - MER94 DNA DNA -3 131 4 8999 201 40 35 chr15 57981043 57981717 -43398804 - L1MB7 LINE L1 -16 6666 5997 363 98 0 0 chr15 57981717 57981778 -43398743 + (CAT)n Simple_repeat Simple_repeat 3 63 0 8999 201 40 35 chr15 57981778 57982547 -43397974 - L1MB7 LINE L1 -685 5997 5233 2391 83 0 10 chr15 57982547 57982849 -43397672 - AluY SINE Alu -12 299 1 8999 201 40 35 chr15 57982849 57983302 -43397219 - L1MB7 LINE L1 -1449 5233 4784 282 116 0 0 chr15 57983302 57983345 -43397176 + (TG)n Simple_repeat Simple_repeat 2 44 0 8999 201 40 35 chr15 57983345 57984567 -43395954 - L1MB7 LINE L1 -1898 4784 3531 6042 217 50 30 chr15 57984561 57986499 -43394022 - L1MB7 LINE L1 -4660 1986 2 * 5891 124 25 34 chr15 57986631 57987542 -43392979 + MER4D LTR ERV1 1 903 0 205 207 0 17 chr15 57987993 57988051 -43392470 + (TTA)n Simple_repeat Simple_repeat 2 58 0 803 221 52 102 chr15 57988190 57988515 -43392006 + MER5C DNA MER1_type 1 309 -15 2315 94 10 0 chr15 57989170 57989467 -43391054 - AluSc SINE Alu -9 300 1 1723 120 0 0 chr15 57989718 57989951 -43390570 - AluSg/x SINE Alu -9 303 71 344 297 138 4 chr15 57991305 57991506 -43389015 - MIR SINE MIR -12 250 22 294 265 131 46 chr15 57992596 57992646 -43387875 - MIR SINE MIR -68 140 96 2820 197 26 0 chr15 57992646 57993175 -43387346 - L1MB5 LINE L1 -8 6166 5624 294 265 131 46 chr15 57993175 57993298 -43387223 - MIR SINE MIR -112 96 16 246 62 0 0 chr15 57994854 57994886 -43385635 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 378 280 142 60 chr15 57995047 57995201 -43385320 + L1ME4a LINE L1 5579 5719 -402 1426 181 24 55 chr15 57995201 57995533 -43384988 + AluJo SINE Alu 1 323 0 378 280 142 60 chr15 57995533 57995659 -43384862 + L1ME4a LINE L1 5719 5883 -238 302 301 55 48 chr15 57996785 57996931 -43383590 - MIR SINE MIR -12 250 104 2259 107 0 19 chr15 57996943 57997253 -43383268 + AluSx SINE Alu 1 304 -8 1422 118 9 5 chr15 57999651 57999862 -43380659 - AluSg/x SINE Alu -6 306 95 498 223 45 0 chr15 58000673 58000785 -43379736 - MIR SINE MIR -60 202 86 490 327 64 28 chr15 58000857 58001108 -43379413 + MIR SINE MIR 3 262 0 273 350 28 33 chr15 58001213 58001393 -43379128 + MIR SINE MIR 14 192 -70 186 43 0 0 chr15 58001419 58001442 -43379079 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 261 237 0 17 chr15 58001456 58001515 -43379006 - L2 LINE L2 -28 3244 3187 355 302 279 16 chr15 58001876 58002134 -43378387 - L2 LINE L2 -5 3267 2942 466 252 39 0 chr15 58002900 58003003 -43377518 - MIR SINE MIR -77 185 79 183 42 0 0 chr15 58004180 58004204 -43376317 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 181 314 0 0 chr15 58004532 58004583 -43375938 + L3 LINE CR1 1526 1576 -1 669 222 83 17 chr15 58005211 58005391 -43375130 - MIR SINE MIR -54 208 17 181 329 27 0 chr15 58005425 58005498 -43375023 + L2 LINE L2 2990 3064 -208 363 264 169 60 chr15 58007432 58007633 -43372888 - MIR SINE MIR -27 235 13 386 300 58 8 chr15 58008415 58008551 -43371970 - MIR SINE MIR -57 151 30 229 286 18 0 chr15 58009400 58009456 -43371065 - L2 LINE L2 -12 3260 3204 1511 166 51 81 chr15 58010280 58010716 -43369805 - MLT1B LTR MaLR 0 467 1 320 260 170 0 chr15 58010852 58010952 -43369569 + L2 LINE L2 3156 3272 0 818 228 70 0 chr15 58012671 58012842 -43367679 - MER5A DNA MER1_type 0 189 7 461 256 17 8 chr15 58012856 58012973 -43367548 - MER5B DNA MER1_type -10 168 51 241 192 39 0 chr15 58012982 58013034 -43367487 - L1MC4 LINE L1 0 8042 7989 2376 223 95 10 chr15 58013041 58013661 -43366860 - L1MC4 LINE L1 -140 7902 7230 335 194 233 0 chr15 58013667 58013770 -43366751 - L1MC4 LINE L1 -969 7073 6947 364 191 0 0 chr15 58013771 58013834 -43366687 - MER5B DNA MER1_type -114 64 2 204 289 0 0 chr15 58014123 58014175 -43366346 + MIR SINE MIR 50 101 -161 533 241 59 29 chr15 58014178 58014348 -43366173 + MLT1B LTR MaLR 1 175 -199 836 169 24 24 chr15 58014410 58014576 -43365945 + MLT1B LTR MaLR 196 361 -29 400 286 48 0 chr15 58014576 58014702 -43365819 + MIR SINE MIR 128 259 -3 281 244 12 61 chr15 58014768 58014850 -43365671 - L2 LINE L2 -8 3264 3187 398 191 52 78 chr15 58016538 58016653 -43363868 - MARNA DNA Mariner -217 369 258 198 308 27 62 chr15 58017181 58017327 -43363194 + L3b LINE CR1 1123 1263 -320 494 333 34 6 chr15 58017409 58017586 -43362935 + MIR3 SINE MIR 12 193 -15 216 320 74 33 chr15 58018082 58018204 -43362317 - MIR SINE MIR -73 189 63 * 440 311 118 30 chr15 58018202 58018533 -43361988 - L2 LINE L2 -2 3311 2952 2054 96 26 42 chr15 58019460 58019772 -43360749 + AluY SINE Alu 1 307 -4 208 229 0 0 chr15 58020536 58020584 -43359937 + CT-rich Low_complexity Low_complexity 2 49 0 295 60 40 0 chr15 58020857 58020907 -43359614 + (GA)n Simple_repeat Simple_repeat 1 52 0 931 269 133 18 chr15 58021408 58021806 -43358715 + L1ME4a LINE L1 5384 5827 -294 2153 130 0 0 chr15 58021806 58022105 -43358416 + AluSx SINE Alu 1 299 -13 208 204 74 0 chr15 58022200 58022254 -43358267 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 357 257 9 35 chr15 58022261 58022374 -43358147 - MIR SINE MIR -44 218 109 258 257 20 81 chr15 58022493 58022555 -43357966 + L1ME4a LINE L1 5982 6046 -75 2299 79 0 0 chr15 58022555 58022875 -43357646 - AluSc SINE Alu 0 320 1 258 257 20 81 chr15 58022875 58022959 -43357562 + L1ME4a LINE L1 6046 6120 -1 839 274 62 49 chr15 58023464 58023832 -43356689 + Charlie2 DNA MER1_type 1 373 -2489 1422 162 56 212 chr15 58023842 58024805 -43355716 + Charlie2 DNA MER1_type 2013 2825 -37 369 0 0 0 chr15 58024812 58024853 -43355668 + (TG)n Simple_repeat Simple_repeat 2 42 0 209 284 71 71 chr15 58025563 58025690 -43354831 + MIR SINE MIR 63 189 -73 1505 71 20 0 chr15 58026258 58026456 -43354065 + AluY SINE Alu 93 294 -17 243 0 0 0 chr15 58026575 58026602 -43353919 + (TG)n Simple_repeat Simple_repeat 2 28 0 258 386 30 8 chr15 58026784 58026916 -43353605 - MIR3 SINE MIR -7 201 67 24 0 0 0 chr15 58027039 58027063 -43353458 + AT_rich Low_complexity Low_complexity 1 24 0 1142 173 19 42 chr15 58027704 58027918 -43352603 - AluJo SINE Alu -17 295 87 2217 113 0 3 chr15 58027930 58028230 -43352291 - AluSx SINE Alu -9 303 5 181 292 0 0 chr15 58028580 58028628 -43351893 - L3 LINE CR1 -2 1575 1528 468 317 40 15 chr15 58028864 58029063 -43351458 - L3 LINE CR1 -129 1448 1245 217 236 18 18 chr15 58031142 58031197 -43349324 + MIR SINE MIR 100 154 -108 221 260 20 0 chr15 58031559 58031609 -43348912 - MIR SINE MIR -136 72 22 2041 139 0 7 chr15 58032986 58033280 -43347241 - AluJb SINE Alu -20 292 1 313 295 0 9 chr15 58033425 58033540 -43346981 + MIR SINE MIR 50 162 -65 1035 189 87 5 chr15 58033542 58033738 -43346783 + MER58A DNA MER1_type 13 224 0 2425 69 3 0 chr15 58034109 58034412 -43346109 - AluY SINE Alu -7 304 1 483 245 42 33 chr15 58034482 58034665 -43345856 + MIR SINE MIR 62 243 -19 187 317 150 33 chr15 58034779 58034899 -43345622 - L3 LINE CR1 -751 826 693 24 53 0 0 chr15 58035753 58035791 -43344730 + AT_rich Low_complexity Low_complexity 1 38 0 349 299 104 18 chr15 58035874 58036038 -43344483 - MIR SINE MIR -1 261 84 465 327 79 18 chr15 58036101 58036379 -43344142 + L3 LINE CR1 932 1226 -351 604 336 8 25 chr15 58036393 58036645 -43343876 + MIR SINE MIR 20 260 -2 206 178 0 22 chr15 58037347 58037392 -43343129 + (TTA)n Simple_repeat Simple_repeat 3 46 0 283 315 6 37 chr15 58038874 58039036 -43341485 + (TATG)n Simple_repeat Simple_repeat 1 157 0 198 309 0 0 chr15 58040343 58040398 -43340123 + L2 LINE L2 2257 2311 -1003 219 306 32 48 chr15 58040701 58040825 -43339696 + MIR SINE MIR 22 143 -65 272 232 81 30 chr15 58041230 58041329 -43339192 - MLT1L LTR MaLR -4 611 508 495 284 27 44 chr15 58041729 58041912 -43338609 - MIR SINE MIR -1 261 82 333 257 177 0 chr15 58042053 58042166 -43338355 + MER94 DNA DNA 2 134 0 454 342 10 20 chr15 58042404 58042606 -43337915 + MIR SINE MIR 13 212 -50 2353 91 0 10 chr15 58043233 58043542 -43336979 + AluSx SINE Alu 1 306 -6 2466 130 8 8 chr15 58043553 58043908 -43336613 - THE1A LTR MaLR 0 355 1 1669 164 3 59 chr15 58044601 58044782 -43335739 - AluJo SINE Alu -6 306 149 2076 131 3 7 chr15 58044782 58045080 -43335441 - AluSx SINE Alu -15 297 1 1669 164 3 59 chr15 58045080 58045222 -43335299 - AluJo SINE Alu -163 149 1 209 345 24 12 chr15 58047411 58047495 -43333026 + L2 LINE L2 3112 3196 -76 428 313 142 8 chr15 58047743 58047958 -43332563 - MIR SINE MIR -18 244 9 380 325 18 30 chr15 58048123 58048292 -43332229 + MIR SINE MIR 93 259 -3 569 265 15 8 chr15 58048749 58048881 -43331640 - L2 LINE L2 0 3272 3140 1610 162 78 90 chr15 58049038 58049477 -43331044 + L1MB7 LINE L1 5724 6156 -28 553 325 96 48 chr15 58049651 58050255 -43330266 - L2 LINE L2 -456 2858 2226 1551 246 67 0 chr15 58050359 58050762 -43329759 + L1MC4 LINE L1 7471 7900 -142 214 338 99 13 chr15 58050874 58051025 -43329496 - L2 LINE L2 -1944 1370 1207 225 279 16 0 chr15 58051242 58051303 -43329218 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 543 285 64 0 chr15 58053239 58053411 -43327110 - MIR SINE MIR -1 261 79 784 211 13 0 chr15 58053977 58054129 -43326392 + MER33 DNA MER1_type 1 154 -170 786 189 8 0 chr15 58054131 58054253 -43326268 + FLAM_A SINE Alu 3 125 -17 873 190 0 11 chr15 58054253 58054437 -43326084 + MER33 DNA MER1_type 143 324 0 198 0 0 0 chr15 58055129 58055151 -43325370 + (A)n Simple_repeat Simple_repeat 1 22 0 260 265 137 10 chr15 58057218 58057320 -43323201 + MER5A DNA MER1_type 53 167 -22 * 303 277 106 11 chr15 58057258 58057352 -43323169 - MER5A DNA MER1_type -85 104 2 702 254 149 0 chr15 58057366 58057594 -43322927 + MIR SINE MIR 1 262 0 477 284 37 122 chr15 58057959 58058230 -43322291 - L2 LINE L2 -1 3271 3024 377 276 62 24 chr15 58059111 58059274 -43321247 - MIR3 SINE MIR -35 173 2 249 61 0 0 chr15 58059811 58059844 -43320677 + Alu SINE Alu 39 71 -228 1971 97 4 8 chr15 58059845 58060103 -43320418 + AluSg SINE Alu 43 299 -11 556 282 34 13 chr15 58060120 58060269 -43320252 - MER5A DNA MER1_type -3 186 35 441 0 0 0 chr15 58060453 58060502 -43320019 + (TA)n Simple_repeat Simple_repeat 1 49 0 308 330 80 0 chr15 58060945 58061057 -43319464 + L2 LINE L2 3151 3271 -1 209 200 22 0 chr15 58061721 58061766 -43318755 + GA-rich Low_complexity Low_complexity 2 47 0 199 396 21 0 chr15 58061768 58061864 -43318657 - MIR SINE MIR -6 256 159 182 36 0 36 chr15 58061885 58061913 -43318608 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 930 157 7 0 chr15 58061915 58062062 -43318459 - FRAM SINE Alu -30 146 1 305 274 71 0 chr15 58062068 58062152 -43318369 - MIR SINE MIR -64 144 55 * 731 286 62 4 chr15 58062151 58062392 -43318129 - MIR SINE MIR 0 262 8 488 202 160 34 chr15 58062583 58062702 -43317819 + MER94 DNA DNA 1 134 0 264 77 0 0 chr15 58062718 58062757 -43317764 + (CA)n Simple_repeat Simple_repeat 2 40 0 421 307 17 28 chr15 58063424 58063600 -43316921 - MIR SINE MIR -50 212 39 1026 213 80 37 chr15 58064715 58065045 -43315476 + MER33 DNA MER1_type 1 324 0 553 204 183 7 chr15 58065080 58065217 -43315304 + MER5A DNA MER1_type 29 189 0 354 239 0 0 chr15 58065217 58065284 -43315237 + L2 LINE L2 3247 3313 0 2525 88 12 9 chr15 58065412 58065755 -43314766 + THE1B LTR MaLR 1 344 -20 243 0 0 0 chr15 58067936 58067963 -43312558 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 333 167 0 125 chr15 58069951 58069987 -43310534 + MER103 DNA DNA 23 62 -104 2297 113 0 3 chr15 58069987 58070296 -43310225 - AluSg SINE Alu -2 308 1 333 167 0 125 chr15 58070296 58070355 -43310166 + MER103 DNA DNA 62 106 -60 793 240 39 5 chr15 58070445 58070649 -43309872 + MER58A DNA MER1_type 1 211 -13 613 241 134 31 chr15 58071068 58071292 -43309229 - MIR SINE MIR -14 248 2 269 303 341 0 chr15 58073168 58073300 -43307221 + MER91A DNA MER1_type 8 184 -12 351 0 0 0 chr15 58074185 58074224 -43306297 + (TA)n Simple_repeat Simple_repeat 2 40 0 2073 127 0 40 chr15 58075173 58075496 -43305025 - AluJb SINE Alu -2 310 1 426 260 99 42 chr15 58076584 58076776 -43303745 - MIR SINE MIR -49 213 11 240 358 33 25 chr15 58079138 58079258 -43301263 + L2 LINE L2 3146 3266 -6 1152 35 0 0 chr15 58080264 58080405 -43300116 + (GAA)n Simple_repeat Simple_repeat 1 141 0 1487 116 70 0 chr15 58081099 58081314 -43299207 + MER30 DNA MER1_type 1 230 0 2071 99 3 0 chr15 58081425 58081757 -43298764 + AluY SINE Alu 1 333 0 206 176 0 0 chr15 58082102 58082136 -43298385 + MIR SINE MIR 222 255 -7 2277 97 0 0 chr15 58082138 58082428 -43298093 + AluSx SINE Alu 1 290 -22 251 280 32 32 chr15 58082791 58082948 -43297573 - L2 LINE L2 -188 3084 2928 368 304 137 25 chr15 58083916 58084120 -43296401 + MIR SINE MIR 34 260 -2 249 308 35 71 chr15 58084245 58084414 -43296107 + MIR3 SINE MIR 32 194 -14 321 316 71 13 chr15 58084838 58084993 -43295528 - MER5A DNA MER1_type 0 189 26 275 125 0 0 chr15 58085445 58085485 -43295036 + L2 LINE L2 3014 3053 -219 2348 90 3 10 chr15 58086774 58087084 -43293437 - AluSp SINE Alu -5 308 1 243 0 0 0 chr15 58087236 58087263 -43293258 + (A)n Simple_repeat Simple_repeat 1 27 0 2212 118 20 0 chr15 58087463 58087760 -43292761 - AluSg SINE Alu -7 303 1 284 327 85 20 chr15 58087896 58088049 -43292472 - MIR SINE MIR -59 203 41 257 49 73 0 chr15 58090078 58090119 -43290402 + A-rich Low_complexity Low_complexity 2 45 0 254 278 0 0 chr15 58090932 58090986 -43289535 - L2 LINE L2 -2 3270 3217 386 331 16 8 chr15 58091033 58091154 -43289367 - MIR SINE MIR -121 141 20 2405 80 0 7 chr15 58091759 58092061 -43288460 - AluY SINE Alu -11 300 1 242 328 129 26 chr15 58092093 58092209 -43288312 - MER5B DNA MER1_type 0 178 51 514 256 8 0 chr15 58092211 58092328 -43288193 - L1ME3 LINE L1 -3 6159 6042 327 143 107 0 chr15 58092330 58092386 -43288135 + MER5B DNA MER1_type 115 176 -2 200 289 39 0 chr15 58092595 58092647 -43287874 + L2 LINE L2 3128 3181 -91 581 211 47 47 chr15 58092876 58093004 -43287517 + FLAM_C SINE Alu 1 128 -5 434 157 0 11 chr15 58093006 58093095 -43287426 + (TA)n Simple_repeat Simple_repeat 1 88 0 987 195 5 5 chr15 58093100 58093285 -43287236 + AluSg/x SINE Alu 121 305 -7 360 332 64 72 chr15 58094217 58094482 -43286039 + L2 LINE L2 3010 3272 0 184 281 53 0 chr15 58094495 58094552 -43285969 - MIR SINE MIR -116 92 33 389 343 47 18 chr15 58095623 58095792 -43284729 - MIR3 SINE MIR -15 193 20 189 107 0 0 chr15 58098780 58098808 -43281713 + (TG)n Simple_repeat Simple_repeat 2 29 0 329 301 0 0 chr15 58099760 58099853 -43280668 + MIR SINE MIR 170 262 0 208 308 37 28 chr15 58099944 58100051 -43280470 + L2 LINE L2 2948 3055 -217 748 266 174 14 chr15 58100140 58100415 -43280106 - MER5C DNA MER1_type 0 324 6 211 164 33 0 chr15 58100541 58100602 -43279919 + (TGAA)n Simple_repeat Simple_repeat 1 63 0 232 263 40 10 chr15 58101661 58101760 -43278761 - L2 LINE L2 -214 3058 2957 2833 157 24 22 chr15 58101783 58102071 -43278450 - Tigger3b DNA MER2_type -2529 499 208 2194 103 7 0 chr15 58102071 58102362 -43278159 - AluSc SINE Alu -16 293 1 2833 157 24 22 chr15 58102362 58102571 -43277950 - Tigger3b DNA MER2_type -2820 208 1 582 252 32 7 chr15 58102645 58102800 -43277721 - MIR SINE MIR -102 160 2 505 241 9 0 chr15 58103094 58103210 -43277311 - L2 LINE L2 -1 3312 3196 2088 132 3 0 chr15 58103273 58103562 -43276959 - AluSc SINE Alu -19 290 1 975 204 60 23 chr15 58103857 58104073 -43276448 - MER58A DNA MER1_type 0 224 1 224 300 107 27 chr15 58104331 58104481 -43276040 + L3b LINE CR1 1301 1462 -121 230 321 146 6 chr15 58106651 58106816 -43273705 - MIR SINE MIR -74 188 1 23 33 0 0 chr15 58107084 58107114 -43273407 + AT_rich Low_complexity Low_complexity 1 30 0 456 270 121 51 chr15 58107148 58107370 -43273151 - L2 LINE L2 -77 3236 3031 1799 124 110 58 chr15 58107370 58107716 -43272805 - THE1B LTR MaLR 0 364 1 456 270 121 51 chr15 58107716 58107942 -43272579 - L2 LINE L2 -282 3031 2756 185 143 29 0 chr15 58109453 58109488 -43271033 + L2 LINE L2 3265 3300 -13 228 316 113 39 chr15 58110627 58110858 -43269663 + L2 LINE L2 2565 2812 -502 278 351 117 52 chr15 58110951 58111276 -43269245 + L2 LINE L2 2853 3198 -74 2253 115 3 3 chr15 58112059 58112371 -43268150 + AluSx SINE Alu 1 312 0 1686 176 24 14 chr15 58113842 58114138 -43266383 + AluJo SINE Alu 1 299 -13 822 171 11 4 chr15 58114150 58114416 -43266105 + GA-rich Low_complexity Low_complexity 1 268 0 307 118 0 20 chr15 58114418 58114469 -43266052 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 219 330 60 10 chr15 58114498 58114598 -43265923 + MIR SINE MIR 38 142 -66 391 252 114 23 chr15 58114861 58114992 -43265529 - L2 LINE L2 0 3313 3171 187 262 33 16 chr15 58115495 58115556 -43264965 + L2 LINE L2 3201 3262 -10 227 153 85 51 chr15 58115868 58115927 -43264594 + MIR SINE MIR 120 180 -82 21 0 0 0 chr15 58117131 58117152 -43263369 + AT_rich Low_complexity Low_complexity 1 21 0 226 303 15 0 chr15 58117409 58117475 -43263046 - L2 LINE L2 -4 3309 3243 244 287 53 11 chr15 58117700 58117794 -43262727 + L2 LINE L2 3160 3257 -15 246 323 52 39 chr15 58122149 58122304 -43258217 - MIR3 SINE MIR -6 202 46 256 273 0 0 chr15 58123010 58123065 -43257456 + (TATG)n Simple_repeat Simple_repeat 4 58 0 249 276 48 38 chr15 58123843 58123948 -43256573 - MIR SINE MIR -68 140 35 257 224 0 0 chr15 58124109 58124167 -43256354 + (CA)n Simple_repeat Simple_repeat 2 59 0 817 190 5 54 chr15 58125241 58125296 -43255225 - MER58A DNA MER1_type -2209 211 155 1541 173 60 0 chr15 58125296 58125588 -43254933 - AluJo SINE Alu 0 308 1 817 190 5 54 chr15 58125588 58125715 -43254806 - MER58A DNA MER1_type -2265 155 37 814 215 21 5 chr15 58126858 58127044 -43253477 + MER5A DNA MER1_type 1 189 0 251 285 153 0 chr15 58127065 58127202 -43253319 - MIR3 SINE MIR -48 160 3 662 204 90 114 chr15 58129814 58129970 -43250551 + MER8 DNA MER2_type 1 150 -89 2280 113 0 0 chr15 58129970 58130272 -43250249 - AluSq SINE Alu -11 302 1 662 204 90 114 chr15 58130272 58130360 -43250161 + MER8 DNA MER2_type 150 239 0 180 224 47 71 chr15 58130389 58130474 -43250047 - MIR SINE MIR -51 211 129 2418 90 0 3 chr15 58130643 58130953 -43249568 - AluY SINE Alu -2 309 1 287 263 90 60 chr15 58131985 58132118 -43248403 - L2 LINE L2 0 3272 3136 435 273 101 19 chr15 58132452 58132661 -43247860 - MIR SINE MIR -25 237 12 191 273 76 15 chr15 58132746 58132812 -43247709 + L2 LINE L2 3238 3307 -6 211 374 54 12 chr15 58133465 58133631 -43246890 + MIR SINE MIR 72 244 -18 321 197 0 0 chr15 58133646 58133712 -43246809 + (TAGG)n Simple_repeat Simple_repeat 2 67 0 341 305 66 23 chr15 58133805 58133976 -43246545 + MIR SINE MIR 38 214 -48 2031 113 43 7 chr15 58133980 58134106 -43246415 + AluSx SINE Alu 1 121 -191 387 0 0 0 chr15 58134106 58134149 -43246372 + (CA)n Simple_repeat Simple_repeat 2 44 0 2031 113 43 7 chr15 58134149 58134304 -43246217 + AluSx SINE Alu 121 292 -20 196 268 36 0 chr15 58134322 58134378 -43246143 + MIR SINE MIR 203 260 -2 706 220 75 6 chr15 58136177 58136350 -43244171 + MER5A DNA MER1_type 3 187 -2 263 202 30 97 chr15 58136739 58136865 -43243656 + MIR SINE MIR 43 163 -63 468 241 62 0 chr15 58137213 58137325 -43243196 - MER119 DNA MER1_type -3 580 462 2224 117 0 0 chr15 58137376 58137674 -43242847 - AluSx SINE Alu -14 298 1 245 227 0 0 chr15 58137682 58137726 -43242795 - MER119 DNA MER1_type -500 83 40 299 182 0 15 chr15 58139582 58139648 -43240873 - MIR SINE MIR -26 236 172 23 33 0 0 chr15 58140912 58140942 -43239579 + AT_rich Low_complexity Low_complexity 1 30 0 2349 89 0 7 chr15 58141409 58141711 -43238810 + AluY SINE Alu 1 300 -11 2409 87 0 7 chr15 58141833 58142142 -43238379 - AluSx SINE Alu -5 307 1 377 269 23 31 chr15 58142156 58142286 -43238235 - MIR SINE MIR -74 188 60 439 290 32 0 chr15 58143383 58143507 -43237014 - MIR3 SINE MIR -25 183 56 273 239 64 55 chr15 58143593 58143702 -43236819 - MIR SINE MIR -114 148 39 651 182 0 91 chr15 58144560 58144736 -43235785 - MER5B DNA MER1_type -16 162 3 318 262 35 48 chr15 58145716 58145861 -43234660 + MIR3 SINE MIR 61 203 -5 1256 155 79 49 chr15 58147199 58147503 -43233018 - L1MA9 LINE L1 -4 6308 5996 252 294 0 0 chr15 58147693 58147761 -43232760 - MIR SINE MIR -108 154 87 303 146 0 0 chr15 58149178 58149233 -43231288 + (TG)n Simple_repeat Simple_repeat 2 56 0 22 35 0 0 chr15 58150000 58150029 -43230492 + AT_rich Low_complexity Low_complexity 1 29 0 1660 167 10 7 chr15 58150301 58150601 -43229920 + L1MB5 LINE L1 5857 6157 -17 196 273 91 26 chr15 58151299 58151376 -43229145 - MIR3 SINE MIR -18 190 109 431 299 65 15 chr15 58151531 58151732 -43228789 + MIR SINE MIR 49 259 -3 243 236 0 0 chr15 58152611 58152666 -43227855 - MIR SINE MIR -25 237 183 281 289 82 22 chr15 58152746 58152885 -43227636 + MIR3 SINE MIR 3 149 -93 207 139 0 0 chr15 58153001 58153037 -43227484 + (TCCC)n Simple_repeat Simple_repeat 3 38 0 278 267 223 44 chr15 58155333 58155539 -43224982 + MIR SINE MIR 20 262 0 1687 152 0 79 chr15 58156026 58156356 -43224165 + AluSx SINE Alu 9 312 0 180 0 0 0 chr15 58156571 58156591 -43223930 + (A)n Simple_repeat Simple_repeat 1 20 0 759 22 0 0 chr15 58158009 58158098 -43222423 + (GAAA)n Simple_repeat Simple_repeat 3 91 0 36 0 0 0 chr15 58159813 58159849 -43220672 + AT_rich Low_complexity Low_complexity 1 36 0 2447 48 3 0 chr15 58159856 58160150 -43220371 + AluY SINE Alu 1 295 -16 339 214 56 48 chr15 58160150 58160268 -43220253 + MER103 DNA DNA 43 164 -2 237 306 41 20 chr15 58161372 58161470 -43219051 + L2 LINE L2 2983 3082 -190 519 311 106 43 chr15 58163476 58165092 -43215429 + L1MC/D LINE L1 3611 5328 -818 1061 256 137 28 chr15 58165109 58165504 -43215017 - LTR16A LTR ERVL -10 440 3 604 280 135 25 chr15 58165509 58165834 -43214687 + L1MC/D LINE L1 5340 5700 -2108 432 214 89 42 chr15 58166253 58166421 -43214100 - MIR SINE MIR -27 235 60 360 64 0 0 chr15 58167438 58167485 -43213036 + (CA)n Simple_repeat Simple_repeat 2 48 0 261 0 0 0 chr15 58168759 58168788 -43211733 + (TG)n Simple_repeat Simple_repeat 1 29 0 417 293 121 6 chr15 58168944 58169118 -43211403 - L2 LINE L2 -556 2758 2565 22 0 0 0 chr15 58171890 58171912 -43208609 + AT_rich Low_complexity Low_complexity 1 22 0 416 238 175 25 chr15 58172016 58172176 -43208345 - MER117 DNA MER1_type -4 193 10 223 345 27 18 chr15 58172626 58172736 -43207785 + MIR3 SINE MIR 67 177 -31 48 72 0 0 chr15 58173527 58173624 -43206897 + AT_rich Low_complexity Low_complexity 1 97 0 427 252 81 9 chr15 58173658 58173769 -43206752 - L2 LINE L2 0 3313 3195 189 354 0 25 chr15 58174083 58174162 -43206359 - L2 LINE L2 -235 3037 2961 203 290 0 16 chr15 58174745 58174807 -43205714 + MIR3 SINE MIR 141 201 -7 1398 141 34 46 chr15 58176080 58176343 -43204178 + L1MA6 LINE L1 6037 6296 -4 22 0 0 0 chr15 58176377 58176399 -43204122 + AT_rich Low_complexity Low_complexity 1 22 0 229 277 10 69 chr15 58177792 58177893 -43202628 - MIR3 SINE MIR -30 178 84 220 213 106 0 chr15 58178196 58178243 -43202278 + L2 LINE L2 3216 3267 -5 208 291 0 0 chr15 58178843 58178898 -43201623 + L2 LINE L2 3214 3268 -4 545 291 6 0 chr15 58179638 58179796 -43200725 - MIR SINE MIR -6 256 98 299 248 38 60 chr15 58181119 58181252 -43199269 + MIR SINE MIR 114 243 -19 594 249 114 0 chr15 58182459 58182653 -43197868 + MIR SINE MIR 36 256 -6 417 244 61 8 chr15 58182962 58183093 -43197428 + L1ME4a LINE L1 5759 5896 -225 28 0 0 0 chr15 58183671 58183699 -43196822 + AT_rich Low_complexity Low_complexity 1 28 0 181 281 49 85 chr15 58183740 58183822 -43196699 - MIR SINE MIR -125 137 59 266 349 142 9 chr15 58184866 58185078 -43195443 - MIR SINE MIR -1 261 22 430 315 73 12 chr15 58186955 58187120 -43193401 - MIR SINE MIR -70 192 18 294 238 32 95 chr15 58187720 58187846 -43192675 - MIR SINE MIR -67 141 24 351 0 0 0 chr15 58189489 58189528 -43190993 + (T)n Simple_repeat Simple_repeat 1 39 0 353 155 31 10 chr15 58190107 58190204 -43190317 + (TA)n Simple_repeat Simple_repeat 1 99 0 240 111 0 0 chr15 58190211 58190247 -43190274 + (TG)n Simple_repeat Simple_repeat 2 37 0 1796 120 3 95 chr15 58190248 58190564 -43189957 - AluSq SINE Alu -26 287 1 336 294 54 0 chr15 58190756 58190848 -43189673 + MIR SINE MIR 30 126 -82 484 316 34 39 chr15 58191987 58192136 -43188385 + MIR SINE MIR 10 159 -103 1977 195 95 50 chr15 58192136 58192619 -43187902 - MLT1D LTR MaLR 0 505 1 484 316 34 39 chr15 58192619 58192703 -43187818 + MIR SINE MIR 159 242 -20 307 357 78 13 chr15 58192944 58193098 -43187423 - MIR SINE MIR -79 183 20 690 186 161 0 chr15 58193339 58193500 -43187021 - MER5A DNA MER1_type 0 189 3 23 0 0 0 chr15 58195047 58195070 -43185451 + AT_rich Low_complexity Low_complexity 1 23 0 749 283 87 4 chr15 58195100 58195330 -43185191 - MIR SINE MIR -10 252 4 1000 142 76 46 chr15 58195678 58195875 -43184646 - AluJb SINE Alu -29 283 81 220 224 86 17 chr15 58195950 58196008 -43184513 - MER5A DNA MER1_type -84 105 44 182 294 129 73 chr15 58196128 58196414 -43184107 + L2 LINE L2 2950 3251 -21 695 289 101 9 chr15 58196783 58197011 -43183510 - MIR SINE MIR -6 256 8 1518 199 0 33 chr15 58197430 58197736 -43182785 + AluJb SINE Alu 1 296 -16 328 320 25 25 chr15 58197739 58197861 -43182660 - MIR3 SINE MIR -73 135 14 807 164 0 57 chr15 58198478 58198618 -43181903 - FLAM_C SINE Alu 0 133 2 399 254 154 30 chr15 58198656 58198825 -43181696 + MIR SINE MIR 73 262 0 213 39 0 0 chr15 58199632 58199658 -43180863 + (TAAAAA)n Simple_repeat Simple_repeat 5 30 0 217 257 0 43 chr15 58199660 58199675 -43180846 + GA-rich Low_complexity Low_complexity 3 17 -52 2075 127 3 34 chr15 58199675 58199997 -43180524 + AluSx SINE Alu 1 312 0 217 257 0 43 chr15 58199997 58200051 -43180470 + GA-rich Low_complexity Low_complexity 17 69 0 2185 173 124 15 chr15 58201185 58201653 -43178868 + Charlie1b DNA MER1_type 1 519 -4 2113 122 3 25 chr15 58201860 58202179 -43178342 + AluSx SINE Alu 1 312 0 481 274 58 98 chr15 58202524 58202801 -43177720 + L2 LINE L2 2980 3245 -27 2274 114 0 16 chr15 58202822 58203130 -43177391 + AluSx SINE Alu 1 303 -9 198 0 0 0 chr15 58203686 58203708 -43176813 + (A)n Simple_repeat Simple_repeat 1 22 0 339 301 66 36 chr15 58204169 58204335 -43176186 - MIR3 SINE MIR -2 206 36 261 139 23 0 chr15 58204625 58204668 -43175853 + L1MD3 LINE L1 7212 7255 -740 2127 221 46 39 chr15 58204677 58205244 -43175277 + L1MD3 LINE L1 7404 7974 -21 2193 121 10 0 chr15 58205259 58205564 -43174957 + AluSq SINE Alu 1 308 -5 225 352 0 19 chr15 58206285 58206393 -43174128 + L2 LINE L2 2945 3050 -222 302 306 40 16 chr15 58206563 58206687 -43173834 + L2 LINE L2 3182 3308 -5 1766 169 16 22 chr15 58206708 58207022 -43173499 + AluJo SINE Alu 1 312 0 180 310 23 11 chr15 58207899 58207986 -43172535 + L2 LINE L2 2943 3030 -242 255 267 0 17 chr15 58208299 58208359 -43172162 - MER5A DNA MER1_type -2 187 129 2333 120 0 0 chr15 58208364 58208673 -43171848 + AluSx SINE Alu 1 309 -3 1045 164 45 41 chr15 58210200 58210420 -43170101 - MER58A DNA MER1_type -2 222 2 38 39 0 0 chr15 58210623 58210675 -43169846 + AT_rich Low_complexity Low_complexity 1 52 0 2504 85 0 0 chr15 58211581 58211888 -43168633 + AluY SINE Alu 1 307 -4 272 206 85 109 chr15 58211904 58212069 -43168452 + L1ME3 LINE L1 5693 5853 -1955 1406 160 66 21 chr15 58212494 58212781 -43167740 + AluJb SINE Alu 11 310 -2 22 35 0 0 chr15 58212854 58212883 -43167638 + AT_rich Low_complexity Low_complexity 1 29 0 212 331 61 34 chr15 58213167 58213315 -43167206 + MIR SINE MIR 111 262 0 320 271 69 64 chr15 58214765 58214953 -43165568 + MIR SINE MIR 47 235 -27 496 257 7 21 chr15 58215512 58215656 -43164865 + MLT1K LTR MaLR 446 587 -1 314 247 49 0 chr15 58215731 58215812 -43164709 - MIR SINE MIR -56 152 68 2016 80 0 19 chr15 58216283 58216546 -43163975 + AluSg SINE Alu 1 258 -52 600 297 46 5 chr15 58216774 58216969 -43163552 + MIR SINE MIR 21 223 -39 190 281 0 53 chr15 58218018 58218075 -43162446 - MIR SINE MIR -76 132 79 273 122 0 0 chr15 58218075 58218116 -43162405 + MADE1 DNA Mariner 40 80 0 870 183 17 6 chr15 58220061 58220241 -43160280 + MER96B DNA MER1_type? 1 182 -235 2304 93 0 13 chr15 58224016 58224316 -43156205 - AluSg SINE Alu -14 296 1 247 276 0 26 chr15 58224336 58224412 -43156109 - MER5A DNA MER1_type -30 159 86 379 345 34 19 chr15 58224572 58224781 -43155740 + L1MEd LINE L1 244 455 -5664 401 295 59 62 chr15 58224895 58225217 -43155304 + L1MEd LINE L1 627 947 -5172 868 216 60 6 chr15 58225229 58225448 -43155073 + L1ME3 LINE L1 5889 6281 -53 445 274 136 33 chr15 58225465 58225880 -43154641 + L1MEd LINE L1 954 1510 -980 188 154 154 0 chr15 58226002 58226041 -43154480 - L2 LINE L2 -1 3271 3227 247 301 14 0 chr15 58226166 58226239 -43154282 - L2 LINE L2 -213 3059 2986 481 267 8 0 chr15 58226242 58226362 -43154159 + L2 LINE L2 3152 3272 0 190 311 140 57 chr15 58226421 58226685 -43153836 - L2 LINE L2 -352 2962 2677 203 161 0 0 chr15 58228250 58228281 -43152240 + polypurine Low_complexity Low_complexity 2 32 0 250 301 44 26 chr15 58228394 58228507 -43152014 - L2 LINE L2 -15 3257 3143 227 167 0 0 chr15 58229066 58229108 -43151413 + L1MC4 LINE L1 6662 6703 -1339 263 196 0 0 chr15 58229132 58229188 -43151333 - MER4-int LTR ERV1 -5436 1162 1107 1844 208 24 10 chr15 58230163 58230576 -43149945 + L1MB8 LINE L1 5747 6165 -13 429 264 98 23 chr15 58230633 58230807 -43149714 - MIR3 SINE MIR -1 207 21 606 163 0 10 chr15 58231526 58231624 -43148897 + MLT1A2 LTR MaLR 1 97 -277 587 124 0 11 chr15 58231608 58231697 -43148824 + MLT1A2 LTR MaLR 287 374 0 * 225 200 0 0 chr15 58233267 58233312 -43147209 + A-rich Low_complexity Low_complexity 1 45 0 2223 107 27 0 chr15 58234402 58234700 -43145821 - AluSx SINE Alu -6 306 1 222 279 16 0 chr15 58235802 58235863 -43144658 + L2 LINE L2 3249 3310 -3 2405 50 3 60 chr15 58236872 58237191 -43143330 - AluY SINE Alu -10 301 1 269 169 0 31 chr15 58237642 58237707 -43142814 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 215 297 44 11 chr15 58238805 58238896 -43141625 - MIR SINE MIR -134 128 35 473 214 103 0 chr15 58239612 58239729 -43140792 + L2 LINE L2 3185 3313 0 300 27 0 0 chr15 58240180 58240217 -43140304 + (TG)n Simple_repeat Simple_repeat 2 38 0 557 272 76 41 chr15 58240516 58240683 -43139838 - L1ME4a LINE L1 -2 6119 5959 324 0 0 0 chr15 58240683 58240719 -43139802 + (CA)n Simple_repeat Simple_repeat 1 36 0 557 272 76 41 chr15 58240719 58240867 -43139654 - L1ME4a LINE L1 -162 5959 5793 22 0 0 0 chr15 58241141 58241163 -43139358 + AT_rich Low_complexity Low_complexity 1 22 0 2336 76 0 13 chr15 58241301 58241603 -43138918 + AluY SINE Alu 1 298 -13 342 315 123 8 chr15 58241675 58241805 -43138716 + MIR3 SINE MIR 45 189 -19 423 208 0 0 chr15 58243884 58243956 -43136565 + FLAM_A SINE Alu 1 72 -70 2156 122 3 7 chr15 58245041 58245345 -43135176 + AluSx SINE Alu 2 304 -8 23 33 0 0 chr15 58245908 58245938 -43134583 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr15 58247223 58247244 -43133277 + AT_rich Low_complexity Low_complexity 1 21 0 1248 94 13 0 chr15 58349546 58349705 -43030816 + AluSq SINE Alu 89 249 -64 337 256 54 18 chr15 58349705 58349873 -43030648 - MER104 DNA MER2_type -4 176 3 252 286 18 62 chr15 58350035 58350147 -43030374 - MIR SINE MIR -76 186 80 346 326 104 0 chr15 58351938 58352073 -43028448 + MIR3 SINE MIR 4 152 -56 2011 160 0 0 chr15 58352358 58352664 -43027857 - AluJo SINE Alu -6 306 1 181 340 0 0 chr15 58353033 58353080 -43027441 - L2 LINE L2 -4 3268 3222 645 227 65 32 chr15 58353162 58353409 -43027112 - MER112 DNA MER1_type -1 255 1 433 284 116 32 chr15 58353597 58353787 -43026734 + L2 LINE L2 1974 2179 -1135 347 282 67 67 chr15 58354697 58354735 -43025786 + MIR SINE MIR 66 103 -159 1726 165 16 30 chr15 58354735 58355038 -43025483 - AluJo SINE Alu -5 307 9 347 282 67 67 chr15 58355038 58355148 -43025373 + MIR SINE MIR 102 214 -48 212 375 39 10 chr15 58355207 58355311 -43025210 + MIR SINE MIR 108 214 -48 636 153 81 18 chr15 58356994 58357105 -43023416 - FLAM_C SINE Alu -15 118 1 2646 55 0 0 chr15 58357745 58358056 -43022465 - AluY SINE Alu 0 311 1 308 309 82 21 chr15 58358418 58358612 -43021909 + L2 LINE L2 2634 2839 -475 309 205 26 39 chr15 58358807 58358885 -43021636 - MLT1J LTR MaLR -60 451 375 243 146 0 0 chr15 58359353 58359394 -43021127 + (TG)n Simple_repeat Simple_repeat 2 42 0 1095 149 0 12 chr15 58359607 58359775 -43020746 + FRAM SINE Alu 1 165 -11 1924 124 50 14 chr15 58360041 58360324 -43020197 + AluSx SINE Alu 1 293 -19 225 225 14 42 chr15 58361226 58361297 -43019224 + MER46A DNA MER2_type 101 169 -67 675 301 27 11 chr15 58361307 58361493 -43019028 - MIR SINE MIR -29 233 45 225 0 0 0 chr15 58361890 58361915 -43018606 + (TAAAG)n Simple_repeat Simple_repeat 1 25 0 210 22 0 87 chr15 58362962 58363008 -43017513 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 197 222 0 37 chr15 58363504 58363558 -43016963 + MIR SINE MIR 211 262 0 322 308 60 23 chr15 58363698 58363831 -43016690 + MIR SINE MIR 47 184 -78 1778 190 85 3 chr15 58364098 58364461 -43016060 - MLT2C1 LTR ERVL 0 397 5 2143 110 0 7 chr15 58364862 58365161 -43015360 + AluSg SINE Alu 1 297 -13 388 54 89 0 chr15 58365915 58365971 -43014550 - L1PA7 LINE L1 0 6154 6094 214 268 41 62 chr15 58367455 58367552 -43012969 - MIR SINE MIR -81 181 87 305 281 85 89 chr15 58368324 58368605 -43011916 - L1M2 LINE L1 -5716 1133 854 1231 208 65 0 chr15 58368864 58369109 -43011412 - MER39 LTR ERV1 -446 261 1 466 271 23 16 chr15 58369443 58369572 -43010949 + MIR SINE MIR 20 149 -113 273 146 0 0 chr15 58370194 58370235 -43010286 + MER5A DNA MER1_type 149 189 0 207 0 0 0 chr15 58370367 58370390 -43010131 + (ATG)n Simple_repeat Simple_repeat 3 25 0 369 0 0 0 chr15 58370390 58370431 -43010090 + (TG)n Simple_repeat Simple_repeat 2 42 0 822 122 0 0 chr15 58370906 58371013 -43009508 + U6 snRNA snRNA 1 107 0 1693 193 84 0 chr15 58371014 58371372 -43009149 + L1 LINE L1 4639 5026 -1120 700 201 30 8 chr15 58371472 58371606 -43008915 + AluYb8 SINE Alu 177 313 -5 364 330 28 0 chr15 58371736 58371845 -43008676 + L2 LINE L2 3201 3312 -1 2251 106 3 3 chr15 58372644 58372945 -43007576 + AluSc SINE Alu 1 301 -8 210 216 0 0 chr15 58373157 58373208 -43007313 - L2 LINE L2 -2 3311 3261 21 0 0 0 chr15 58373576 58373597 -43006924 + AT_rich Low_complexity Low_complexity 1 21 0 1886 120 4 11 chr15 58374842 58375116 -43005405 + AluSx SINE Alu 1 272 -40 393 274 103 0 chr15 58375216 58375333 -43005188 - MLT1J LTR MaLR -291 220 92 2072 122 11 45 chr15 58375426 58375802 -43004719 + L1MA2 LINE L1 5942 6304 0 209 306 116 74 chr15 58378455 58378576 -43001945 - L2 LINE L2 0 3272 3147 2203 110 0 0 chr15 58378801 58379118 -43001403 - AluSx SINE Alu 0 318 2 1819 149 35 0 chr15 58379537 58379826 -43000695 - AluJo SINE Alu -13 299 1 666 299 99 43 chr15 58380099 58380497 -43000024 + L2 LINE L2 2793 3167 -146 3495 156 25 3 chr15 58380497 58381062 -42999459 - L1PA16 LINE L1 -3 6163 5587 666 299 99 43 chr15 58381062 58381131 -42999390 + L2 LINE L2 3167 3231 -82 1252 198 99 37 chr15 58381131 58381455 -42999066 - MER2 DNA MER2_type 0 344 1 666 299 99 43 chr15 58381455 58381490 -42999031 + L2 LINE L2 3231 3313 0 31 26 0 0 chr15 58382217 58382255 -42998266 + AT_rich Low_complexity Low_complexity 1 38 0 2219 92 0 0 chr15 58382806 58383087 -42997434 - AluSx SINE Alu -2 310 30 255 342 107 37 chr15 58383408 58383706 -42996815 - MLT1K LTR MaLR -236 352 34 776 159 0 0 chr15 58383812 58383919 -42996602 - FLAM_A SINE Alu -35 107 1 1643 140 0 0 chr15 58384659 58384895 -42995626 + AluSg/x SINE Alu 75 310 0 627 239 174 0 chr15 58386443 58386644 -42993877 + MIR SINE MIR 11 246 -16 374 261 148 7 chr15 58386989 58387131 -42993390 + MIR SINE MIR 31 192 -70 2211 123 3 0 chr15 58388451 58388761 -42991760 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr15 58388798 58388819 -42991702 + AT_rich Low_complexity Low_complexity 1 21 0 2133 170 52 44 chr15 58389059 58389554 -42990967 - L1MB8 LINE L1 0 6178 5680 1955 112 54 0 chr15 58389599 58389875 -42990646 + AluSx SINE Alu 6 296 -16 454 300 158 34 chr15 58389878 58390407 -42990114 - L1 LINE L1 -1527 4619 4026 2050 135 3 7 chr15 58390490 58390786 -42989735 + AluSx SINE Alu 1 295 -17 2495 63 0 0 chr15 58390786 58391085 -42989436 + AluY SINE Alu 1 299 -12 21 71 0 0 chr15 58391085 58391127 -42989394 + AT_rich Low_complexity Low_complexity 1 42 0 1268 133 15 15 chr15 58391307 58391510 -42989011 - THE1B LTR MaLR -161 203 1 1621 181 64 39 chr15 58391763 58391956 -42988565 - MLT1A2 LTR MaLR -5 369 161 2088 104 30 3 chr15 58391956 58392254 -42988267 - AluSc SINE Alu -3 306 1 1621 181 64 39 chr15 58392254 58392420 -42988101 - MLT1A2 LTR MaLR -213 161 1 665 136 0 18 chr15 58393552 58393662 -42986859 + FLAM_A SINE Alu 30 137 -5 2492 76 0 0 chr15 58393692 58393996 -42986525 + AluSc SINE Alu 1 304 -5 5508 118 52 16 chr15 58395384 58396041 -42984480 + L1PB4 LINE L1 5082 5928 -375 2255 94 0 7 chr15 58396041 58396376 -42984145 - AluSq SINE Alu 0 333 1 5508 118 52 16 chr15 58396376 58396758 -42983763 + L1PB4 LINE L1 5928 6295 -8 210 150 0 0 chr15 58396758 58396798 -42983723 + (TA)n Simple_repeat Simple_repeat 1 40 0 206 313 134 40 chr15 58397130 58397331 -42983190 - L2 LINE L2 -217 3055 2836 477 0 0 0 chr15 58397503 58397556 -42982965 + (TG)n Simple_repeat Simple_repeat 2 54 0 369 284 198 15 chr15 58397577 58397628 -42982893 + MIR SINE MIR 2 42 -220 1397 179 114 26 chr15 58397628 58397901 -42982620 + AluJo SINE Alu 1 297 -5 369 284 198 15 chr15 58397901 58398046 -42982475 + MIR SINE MIR 42 234 -28 214 246 35 0 chr15 58398612 58398669 -42981852 + L2 LINE L2 3250 3308 -5 872 213 0 0 chr15 58398782 58398937 -42981584 + FRAM SINE Alu 5 159 -17 213 132 0 0 chr15 58400383 58400421 -42980100 + (TCC)n Simple_repeat Simple_repeat 3 40 0 2260 105 3 13 chr15 58400421 58400736 -42979785 - AluSx SINE Alu 0 312 1 468 359 47 35 chr15 58400740 58401246 -42979275 + L2 LINE L2 2044 2558 -756 3747 127 19 11 chr15 58401246 58401814 -42978707 - L1PA16 LINE L1 0 6166 5594 468 359 47 35 chr15 58401814 58401845 -42978676 + L2 LINE L2 2558 2587 -727 231 256 45 126 chr15 58402027 58402250 -42978271 + L2 LINE L2 2886 3090 -182 199 137 59 78 chr15 58402427 58402478 -42978043 - MIR SINE MIR -2 260 211 1559 154 12 15 chr15 58402570 58402829 -42977692 - AluJo SINE Alu -2 310 53 2325 86 0 20 chr15 58402842 58403144 -42977377 - AluSg SINE Alu -12 298 3 2197 135 0 6 chr15 58403155 58403467 -42977054 - AluSx SINE Alu -2 310 1 1494 187 39 16 chr15 58403468 58403778 -42976743 - L1MB7 LINE L1 -8 6176 5860 570 193 0 20 chr15 58403781 58403931 -42976590 + CT-rich Low_complexity Low_complexity 4 150 0 920 175 7 26 chr15 58403939 58404093 -42976428 - FRAM SINE Alu -15 151 1 844 207 32 65 chr15 58404096 58404342 -42976179 - L1MD1 LINE L1 -369 5873 5636 1515 250 170 39 chr15 58404393 58405110 -42975411 + L1M4 LINE L1 65 875 -5667 1033 154 6 34 chr15 58405155 58405283 -42975238 + MER2 DNA MER2_type 3 126 -219 1781 185 3 10 chr15 58405283 58405585 -42974936 - AluJb SINE Alu -12 300 1 1033 154 6 34 chr15 58405585 58405627 -42974894 + MER2 DNA MER2_type 126 168 -177 2120 150 7 78 chr15 58405627 58405892 -42974629 + Tigger2 DNA MER2_type 1 225 -2493 1823 108 10 61 chr15 58405892 58406187 -42974334 + AluSx SINE Alu 11 290 -22 2120 150 7 78 chr15 58406187 58406354 -42974167 + Tigger2 DNA MER2_type 225 402 -2316 4897 268 36 46 chr15 58406388 58406413 -42974108 + L1M4 LINE L1 2436 2460 -4184 21 0 0 0 chr15 58406413 58406434 -42974087 + AT_rich Low_complexity Low_complexity 1 21 0 4897 268 36 46 chr15 58406434 58407340 -42973181 + L1M4 LINE L1 2460 3374 -3270 2418 75 0 0 chr15 58407340 58407632 -42972889 - AluY SINE Alu -19 292 1 4897 268 36 46 chr15 58407632 58408436 -42972085 + L1M4 LINE L1 3374 4185 -2459 189 0 0 0 chr15 58408436 58408457 -42972064 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 4897 268 36 46 chr15 58408457 58408861 -42971660 + L1M4 LINE L1 4185 4566 -2078 2144 97 28 7 chr15 58408861 58409150 -42971371 + AluSg1 SINE Alu 5 299 -10 4897 268 36 46 chr15 58409150 58409249 -42971272 + L1M4 LINE L1 4566 4665 -1979 321 290 21 11 chr15 58409309 58409402 -42971119 + MIR SINE MIR 58 151 -57 199 331 130 43 chr15 58410755 58411009 -42969512 - L2 LINE L2 -131 3141 2866 329 308 21 56 chr15 58411052 58411195 -42969326 + L2 LINE L2 3132 3269 -3 190 246 123 0 chr15 58411982 58412039 -42968482 + MIR SINE MIR 117 180 -82 2796 166 22 13 chr15 58412095 58412588 -42967933 - L1MB3 LINE L1 -8 6175 5675 2360 110 0 0 chr15 58412588 58412898 -42967623 - AluSg SINE Alu 0 310 1 2796 166 22 13 chr15 58412898 58412946 -42967575 - L1MB3 LINE L1 -508 5675 5629 641 331 70 7 chr15 58413711 58414013 -42966508 - L3 LINE CR1 -275 1302 982 2155 144 59 30 chr15 58414031 58414548 -42965973 + MLT2A2 LTR ERVL 1 554 0 2175 119 7 0 chr15 58414684 58414986 -42965535 - AluSq SINE Alu -9 304 1 285 192 80 113 chr15 58415071 58415222 -42965299 - MIR SINE MIR 0 262 117 398 362 172 13 chr15 58415293 58415823 -42964698 - L3 LINE CR1 -889 688 75 2481 69 0 10 chr15 58416142 58416446 -42964075 - AluY SINE Alu -2 309 9 336 299 37 0 chr15 58417288 58417395 -42963126 + MIR3 SINE MIR 53 163 -45 470 259 30 44 chr15 58417555 58417690 -42962831 - MIR SINE MIR -121 141 9 449 306 166 5 chr15 58417728 58417927 -42962594 - MIR SINE MIR -6 256 26 210 91 0 0 chr15 58418887 58418920 -42961601 + (GA)n Simple_repeat Simple_repeat 1 33 0 189 0 0 0 chr15 58420956 58420977 -42959544 + (T)n Simple_repeat Simple_repeat 1 21 0 423 0 0 0 chr15 58422550 58422597 -42957924 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 319 283 30 10 chr15 58422948 58423047 -42957474 - MER5B DNA MER1_type -6 172 72 269 269 179 37 chr15 58423141 58423275 -42957246 + MIR SINE MIR 2 154 -108 1699 171 20 7 chr15 58423626 58423918 -42956603 - AluJo SINE Alu -11 301 6 266 252 136 4 chr15 58425846 58425974 -42954547 - MIR3 SINE MIR -28 180 29 2106 129 0 10 chr15 58426051 58426362 -42954159 + AluSg SINE Alu 1 308 -2 25 75 0 0 chr15 58427293 58427346 -42953175 + AT_rich Low_complexity Low_complexity 1 53 0 2119 116 17 10 chr15 58427378 58427680 -42952841 - AluSg SINE Alu -5 305 2 393 310 0 6 chr15 58428902 58429060 -42951461 + L1MC4a LINE L1 5750 5906 -1902 2363 157 34 5 chr15 58429380 58429793 -42950728 - MSTB LTR MaLR -1 425 1 605 236 208 0 chr15 58429980 58430196 -42950325 + MIR SINE MIR 2 262 0 2210 98 0 0 chr15 58430479 58430791 -42949730 - AluSg SINE Alu 0 315 4 382 292 156 0 chr15 58431328 58431482 -42949039 + MIR3 SINE MIR 31 208 0 698 257 23 0 chr15 58431519 58431690 -42948831 + MER63A DNA MER1_type 1 175 -35 423 0 0 0 chr15 58432469 58432516 -42948005 + (TA)n Simple_repeat Simple_repeat 1 47 0 1919 133 39 0 chr15 58432517 58432796 -42947725 - AluSx SINE Alu -22 290 1 187 325 241 0 chr15 58433522 58433605 -42946916 + L2 LINE L2 3141 3243 -29 295 301 0 21 chr15 58433630 58433723 -42946798 - MIR SINE MIR -4 258 168 302 256 33 22 chr15 58434374 58434464 -42946057 - L3b LINE CR1 -178 1405 1315 203 59 0 29 chr15 58434723 58434757 -42945764 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 473 290 74 11 chr15 58435891 58436067 -42944454 + MIR SINE MIR 47 233 -29 1212 69 0 13 chr15 58436109 58436268 -42944253 - L1PA10 LINE L1 -13 6155 5999 226 240 0 0 chr15 58437814 58437864 -42942657 - MIR SINE MIR -141 121 72 2106 126 0 0 chr15 58439331 58439617 -42940904 - AluJb SINE Alu -26 286 1 431 250 0 0 chr15 58439828 58439932 -42940589 + U13 snRNA snRNA 1 104 0 465 202 19 0 chr15 58440914 58441018 -42939503 + MLT1C LTR MaLR 1 106 -361 1919 172 27 0 chr15 58441658 58441996 -42938525 + MER7A DNA MER2_type 1 345 -1 30 27 0 0 chr15 58442791 58442828 -42937693 + AT_rich Low_complexity Low_complexity 1 37 0 392 325 136 18 chr15 58443117 58443508 -42937013 + L2 LINE L2 1860 2296 -1018 347 295 72 30 chr15 58443510 58443676 -42936845 + L2 LINE L2 2467 2639 -675 342 350 58 25 chr15 58443688 58443931 -42936590 + L2 LINE L2 2288 2538 -776 241 280 68 68 chr15 58443968 58444086 -42936435 + L2 LINE L2 3141 3258 -14 372 210 0 0 chr15 58444122 58444203 -42936318 + (TA)n Simple_repeat Simple_repeat 2 82 0 2276 188 47 26 chr15 58445034 58445463 -42935058 + MLT1D LTR MaLR 1 444 -61 2418 53 3 0 chr15 58445463 58445766 -42934755 + AluY SINE Alu 1 304 0 2276 188 47 26 chr15 58445766 58445830 -42934691 + MLT1D LTR MaLR 444 505 0 619 281 46 40 chr15 58445963 58446214 -42934307 - MIR SINE MIR 0 262 13 354 231 39 0 chr15 58446301 58446405 -42934116 + MLT1D LTR MaLR 1 108 -397 184 306 0 0 chr15 58446682 58446718 -42933803 + L2 LINE L2 3147 3182 -90 241 361 120 0 chr15 58448380 58448513 -42932008 - MIR SINE MIR -62 200 52 696 222 57 0 chr15 58448679 58448873 -42931648 + MER3 DNA MER1_type 1 205 -4 263 397 33 0 chr15 58448890 58449011 -42931510 - L3 LINE CR1 -20 1557 1433 198 337 76 11 chr15 58449796 58449888 -42930633 + L3 LINE CR1 444 541 -1036 341 289 0 33 chr15 58451291 58451381 -42929140 + MIR SINE MIR 15 101 -161 1764 194 0 9 chr15 58452123 58452438 -42928083 + AluSx SINE Alu 1 312 0 302 336 72 32 chr15 58453772 58453897 -42926624 - L2 LINE L2 0 3313 3184 1655 189 112 26 chr15 58454772 58455228 -42925293 - MLT1D LTR MaLR -9 496 2 501 259 19 9 chr15 58455244 58455406 -42925115 - MIR SINE MIR -7 255 47 200 268 0 0 chr15 58456180 58456221 -42924300 + MIR SINE MIR 114 154 -108 1080 294 34 98 chr15 58456366 58457357 -42923164 - L2 LINE L2 -18 3254 2334 347 0 23 0 chr15 58460595 58460638 -42919883 + (TG)n Simple_repeat Simple_repeat 2 45 0 2595 186 15 4 chr15 58460952 58461494 -42919027 + L1MB7 LINE L1 5591 6138 -46 673 263 78 0 chr15 58461509 58461741 -42918780 - L1M4 LINE L1 -2268 3878 3629 204 284 0 0 chr15 58462017 58462112 -42918409 + GA-rich Low_complexity Low_complexity 1 95 0 1545 198 83 0 chr15 58462426 58462714 -42917807 + AluJo SINE Alu 1 312 0 208 87 0 43 chr15 58462831 58462877 -42917644 + (GGA)n Simple_repeat Simple_repeat 2 45 0 569 329 176 30 chr15 58462990 58463753 -42916768 + L2 LINE L2 2209 3066 -206 401 279 57 29 chr15 58464261 58464401 -42916120 + L2 LINE L2 3129 3272 0 1979 110 0 79 chr15 58464641 58464958 -42915563 + AluSx SINE Alu 1 292 -20 218 385 39 0 chr15 58465240 58465318 -42915203 + L3 LINE CR1 227 307 -1270 22 0 0 0 chr15 58465359 58465381 -42915140 + AT_rich Low_complexity Low_complexity 1 22 0 385 105 40 0 chr15 58466161 58466237 -42914284 + L1PA15 LINE L1 6087 6165 0 382 296 92 29 chr15 58466562 58466941 -42913580 + HAL1b LINE L1 68 470 -878 272 232 39 78 chr15 58467202 58467535 -42912986 - L1M4 LINE L1 -2153 3993 3664 26 30 0 0 chr15 58467680 58467713 -42912808 + AT_rich Low_complexity Low_complexity 1 33 0 1417 136 17 13 chr15 58467816 58467893 -42912628 - MER46A DNA MER2_type -2495 236 161 1608 178 71 3 chr15 58467893 58468219 -42912302 + MER7A DNA MER2_type 1 346 0 1417 136 17 13 chr15 58468219 58468376 -42912145 - MER46A DNA MER2_type -2570 161 1 313 311 0 19 chr15 58468447 58468550 -42911971 - L1M4 LINE L1 -2842 3304 3204 297 330 113 43 chr15 58468686 58468968 -42911553 + L3 LINE CR1 452 753 -824 632 231 24 47 chr15 58469005 58469174 -42911347 - MER91B DNA MER1_type -12 178 14 7770 212 67 29 chr15 58469283 58472978 -42907543 + L1MD1 LINE L1 2407 6242 0 21 0 0 0 chr15 58472978 58472999 -42907522 + AT_rich Low_complexity Low_complexity 1 21 0 409 266 112 18 chr15 58474697 58474866 -42905655 - MIR3 SINE MIR -1 207 23 973 104 11 27 chr15 58475141 58475254 -42905267 + (TTTC)n Simple_repeat Simple_repeat 1 291 0 973 104 11 27 chr15 58475254 58475437 -42905084 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 23 0 0 0 chr15 58475650 58475673 -42904848 + AT_rich Low_complexity Low_complexity 1 23 0 218 245 38 19 chr15 58475673 58475726 -42904795 + MER5B DNA MER1_type 54 107 -71 645 217 130 0 chr15 58475736 58475895 -42904626 + MER5A DNA MER1_type 1 183 -6 27 0 0 0 chr15 58476128 58476155 -42904366 + AT_rich Low_complexity Low_complexity 1 27 0 1597 215 79 76 chr15 58477747 58478288 -42902233 + LTR48B LTR ERV1 1 546 -98 2020 147 132 8 chr15 58478288 58478668 -42901853 + MSTA LTR MaLR 2 428 0 1597 215 79 76 chr15 58478668 58478768 -42901753 + LTR48B LTR ERV1 546 644 0 603 237 96 0 chr15 58478768 58478945 -42901576 - L1ME3A LINE L1 -59 6111 5918 239 0 32 0 chr15 58479753 58479784 -42900737 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr15 58479802 58479831 -42900690 + AT_rich Low_complexity Low_complexity 1 29 0 1700 174 25 11 chr15 58479831 58480113 -42900408 - AluJb SINE Alu -26 286 1 2284 102 0 0 chr15 58481184 58481478 -42899043 + AluSq SINE Alu 1 294 -19 877 102 8 0 chr15 58482257 58482401 -42898120 - FLAM_C SINE Alu 0 145 1 234 325 94 17 chr15 58482586 58482703 -42897818 + L2 LINE L2 2921 3046 -226 2210 101 16 10 chr15 58482807 58483113 -42897408 - AluSx SINE Alu -4 308 1 22 35 0 0 chr15 58483143 58483172 -42897349 + AT_rich Low_complexity Low_complexity 1 29 0 1889 200 58 40 chr15 58483273 58483769 -42896752 - MLT1D LTR MaLR 0 505 1 1505 158 3 89 chr15 58483837 58484153 -42896368 - AluJo SINE Alu -23 289 1 337 282 47 13 chr15 58484208 58484357 -42896164 - L1MC4a LINE L1 -1911 5897 5744 2105 90 10 14 chr15 58484377 58484666 -42895855 - AluSq SINE Alu -13 300 13 185 65 32 0 chr15 58484990 58485021 -42895500 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2358 91 3 0 chr15 58485166 58485462 -42895059 - AluSx SINE Alu -15 297 1 3992 168 45 8 chr15 58485828 58486815 -42893706 + L1MB8 LINE L1 5140 6167 -11 287 248 41 16 chr15 58487866 58487987 -42892534 + L2 LINE L2 2815 2938 -375 892 176 11 11 chr15 58488169 58488355 -42892166 - MLT1D LTR MaLR 0 505 320 2004 181 99 36 chr15 58488355 58488942 -42891579 - LTR48B LTR ERV1 0 644 21 1359 160 48 65 chr15 58488952 58489289 -42891232 - MLT1D LTR MaLR -174 331 1 2348 117 3 0 chr15 58490227 58490536 -42889985 + AluSg SINE Alu 1 310 0 1378 216 116 16 chr15 58490759 58491199 -42889322 + LTR48B LTR ERV1 1 484 -160 278 211 66 26 chr15 58491212 58491288 -42889233 + MIR3 SINE MIR 125 203 -5 311 308 0 26 chr15 58491751 58491868 -42888653 + L1ME4a LINE L1 5799 5912 -209 263 284 62 86 chr15 58492036 58492198 -42888323 - L2 LINE L2 -4 3268 3111 501 335 51 19 chr15 58492429 58492799 -42887722 - L2 LINE L2 -1039 2275 1894 2034 152 3 3 chr15 58493283 58493593 -42886928 - AluJo SINE Alu -2 310 1 310 260 43 8 chr15 58593697 58593801 -42786720 - MIR SINE MIR -102 106 5 1272 184 73 35 chr15 58594044 58594332 -42786189 - AluJo SINE Alu -13 299 1 216 0 0 0 chr15 58594346 58594370 -42786151 + (TG)n Simple_repeat Simple_repeat 2 25 0 194 313 50 38 chr15 58594401 58594481 -42786040 - MIR SINE MIR -173 89 9 2783 10 0 0 chr15 58595718 58596019 -42784502 + AluY SINE Alu 1 301 -10 10466 34 5 0 chr15 58596227 58597506 -42783015 - L1P LINE L1 -3540 2606 1322 204 233 111 33 chr15 58597606 58597696 -42782825 + L2 LINE L2 3158 3254 -18 22 0 0 0 chr15 58599260 58599282 -42781239 + AT_rich Low_complexity Low_complexity 1 22 0 376 363 48 8 chr15 58599442 58599566 -42780955 + L2 LINE L2 3128 3256 -16 3789 93 25 6 chr15 58601342 58601892 -42778629 - L1PB3 LINE L1 0 6154 5594 1789 111 21 0 chr15 58601894 58602173 -42778348 - L1PB3 LINE L1 -616 5538 5254 222 324 0 14 chr15 58603000 58603074 -42777447 - MIR SINE MIR -100 108 36 200 260 70 110 chr15 58604457 58604475 -42776046 + L2 LINE L2 3190 3207 -106 2048 127 43 30 chr15 58604475 58604845 -42775676 - THE1C LTR MaLR 0 375 1 200 260 70 110 chr15 58604845 58604926 -42775595 + L2 LINE L2 3207 3285 -28 304 224 0 0 chr15 58605096 58605154 -42775367 - L2 LINE L2 -1 3312 3255 1022 249 45 13 chr15 58605241 58605571 -42774950 - L1ME3 LINE L1 -10 6152 5807 400 297 92 50 chr15 58606698 58607235 -42773286 + HAL1b LINE L1 61 1703 -770 1820 154 65 0 chr15 58607334 58607659 -42772862 + MER7A DNA MER2_type 3 346 0 252 0 0 0 chr15 58607773 58607801 -42772720 + (T)n Simple_repeat Simple_repeat 1 28 0 611 152 0 0 chr15 58608577 58608682 -42771839 - L1PB4 LINE L1 -12 6144 6040 1301 231 49 15 chr15 58610072 58610478 -42770043 + L1ME3A LINE L1 5746 6165 -5 2174 119 7 0 chr15 58610569 58610863 -42769658 - AluSx SINE Alu -14 298 3 21 36 0 0 chr15 58611119 58611147 -42769374 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr15 58611887 58611908 -42768613 + AT_rich Low_complexity Low_complexity 1 21 0 349 331 29 0 chr15 58612173 58612309 -42768212 + L2 LINE L2 2922 3061 -252 21 0 0 0 chr15 58612790 58612811 -42767710 + AT_rich Low_complexity Low_complexity 1 21 0 216 350 118 69 chr15 58612863 58613109 -42767412 + L2 LINE L2 2917 3174 -98 204 241 0 86 chr15 58613221 58613279 -42767242 + MIR SINE MIR 84 136 -126 368 330 0 18 chr15 58613369 58613478 -42767043 + L2 LINE L2 3201 3307 -6 290 296 46 19 chr15 58613445 58613553 -42766968 + MIR SINE MIR 152 262 0 * 446 163 0 12 chr15 58615218 58615298 -42765223 + MIR SINE MIR 90 168 -94 1512 116 0 5 chr15 58616245 58616452 -42764069 + AluSq SINE Alu 2 207 -106 1162 209 14 0 chr15 58616694 58616914 -42763607 - MER58A DNA MER1_type 0 224 2 354 289 27 80 chr15 58618395 58618620 -42761901 + MIR SINE MIR 49 261 -1 188 308 0 0 chr15 58618764 58618816 -42761705 - L2 LINE L2 -4 3268 3217 274 378 69 33 chr15 58618937 58619212 -42761309 - L2 LINE L2 -181 3091 2807 916 0 9 0 chr15 58619625 58619731 -42760790 - AluYa5/8 SINE Alu -203 107 1 1090 178 5 5 chr15 58619744 58619941 -42760580 - L1M3f LINE L1 -4621 707 511 349 316 170 19 chr15 58621037 58621243 -42759278 + MIR SINE MIR 22 258 -4 595 215 15 15 chr15 58621336 58621466 -42759055 + MIR SINE MIR 95 224 -38 522 272 17 58 chr15 58621906 58622079 -42758442 + MIR SINE MIR 40 205 -57 618 302 51 80 chr15 58622770 58623184 -42757337 + L1MB1 LINE L1 174 815 -5488 2736 252 51 12 chr15 58623353 58624414 -42756107 + L1MB1 LINE L1 777 1787 -4516 10952 176 48 21 chr15 58624444 58624813 -42755708 + L1MB1 LINE L1 2871 3229 -3175 1620 221 16 30 chr15 58624813 58625179 -42755342 - MLT1A1 LTR MaLR -2 363 3 10952 176 48 21 chr15 58625179 58628230 -42752291 + L1MB1 LINE L1 3229 6394 -10 374 261 155 56 chr15 58629978 58630139 -42750382 + MER5A DNA MER1_type 13 189 0 334 333 31 8 chr15 58630139 58630264 -42750257 + L2 LINE L2 3182 3309 -4 825 229 13 52 chr15 58631149 58631380 -42749141 - MIR SINE MIR -39 223 2 240 59 0 0 chr15 58632272 58632306 -42748215 + (CAT)n Simple_repeat Simple_repeat 2 35 0 497 254 63 8 chr15 58633859 58633985 -42746536 + MER5A DNA MER1_type 50 182 -7 2372 93 0 6 chr15 58634526 58634839 -42745682 + AluSx SINE Alu 1 311 -1 306 265 46 80 chr15 58635079 58635192 -42745329 + MIR SINE MIR 94 202 -60 2395 104 0 0 chr15 58635192 58635501 -42745020 + AluSg1 SINE Alu 1 309 0 306 265 46 80 chr15 58635501 58635538 -42744983 + MIR SINE MIR 202 239 -23 * 382 349 0 0 chr15 58635530 58635659 -42744862 - MIR SINE MIR -56 206 78 1932 142 0 30 chr15 58636441 58636759 -42743762 - AluJb SINE Alu 0 309 1 185 233 23 0 chr15 58636875 58636918 -42743603 - L2 LINE L2 -95 3218 3175 193 294 43 54 chr15 58637105 58637197 -42743324 + L3 LINE CR1 1483 1573 -4 644 305 129 9 chr15 58637481 58637714 -42742807 - MIR SINE MIR 0 262 2 438 306 194 0 chr15 58637755 58637951 -42742570 - MIR SINE MIR 0 262 29 188 288 68 51 chr15 58637957 58638075 -42742446 + MIR SINE MIR 53 172 -90 285 297 9 27 chr15 58639735 58639846 -42740675 - LTR16A1 LTR ERVL -348 109 1 931 187 61 0 chr15 58640006 58640204 -42740317 + MER20 DNA MER1_type 2 211 -8 2307 154 60 2 chr15 58640204 58640607 -42739914 - MSTB LTR MaLR 0 426 1 320 352 39 8 chr15 58641238 58641366 -42739155 - MIR SINE MIR -109 153 22 27 0 0 0 chr15 58641775 58641802 -42738719 + AT_rich Low_complexity Low_complexity 1 27 0 276 257 48 34 chr15 58642605 58642763 -42737758 + MIR SINE MIR 25 183 -79 670 196 26 0 chr15 58643035 58643188 -42737333 + MER53 DNA DNA 15 171 -18 320 319 103 0 chr15 58643458 58643574 -42736947 + L2 LINE L2 3137 3264 -8 290 273 182 41 chr15 58643670 58643890 -42736631 + L2 LINE L2 2237 2487 -827 239 254 0 15 chr15 58643935 58644002 -42736519 - MER5B DNA MER1_type -83 95 30 378 0 0 0 chr15 58644448 58644490 -42736031 + (TC)n Simple_repeat Simple_repeat 1 42 0 303 28 0 0 chr15 58644489 58644525 -42735996 + (CA)n Simple_repeat Simple_repeat 1 36 0 * 3388 29 0 0 chr15 58644633 58645079 -42735442 - L1P LINE L1 -2718 3428 2983 184 452 9 0 chr15 58645961 58646076 -42734445 + MIR SINE MIR 30 145 -63 372 341 47 33 chr15 58646161 58646388 -42734133 - MIR SINE MIR -13 249 15 895 274 167 35 chr15 58647497 58648007 -42732514 - L2 LINE L2 -1293 2021 1445 283 177 64 135 chr15 58648464 58648605 -42731916 - L2 LINE L2 0 3313 3183 270 294 92 37 chr15 58648858 58648967 -42731554 - L2 LINE L2 0 3272 3158 4995 110 7 5 chr15 58649135 58649879 -42730642 + L1PA13 LINE L1 5416 6160 -3 193 290 0 0 chr15 58649953 58650015 -42730506 + L2 LINE L2 2992 3053 -219 188 195 0 0 chr15 58650206 58650247 -42730274 + L2 LINE L2 3273 3313 0 308 207 0 37 chr15 58650407 58650489 -42730032 - L1ME4a LINE L1 -72 6049 5971 251 208 38 53 chr15 58650697 58650792 -42729729 + MIR3 SINE MIR 101 199 -9 193 351 0 0 chr15 58651911 58651968 -42728553 + MIR3 SINE MIR 100 156 -52 1311 201 70 32 chr15 58651991 58652275 -42728246 - AluJo SINE Alu -12 300 6 2230 75 4 4 chr15 58652285 58652605 -42727916 - AluY SINE Alu 0 320 1 566 201 130 0 chr15 58652617 58652801 -42727720 - L1MD3 LINE L1 0 7995 7788 2225 92 9 22 chr15 58653057 58653372 -42727149 + AluY SINE Alu 1 311 0 329 190 149 138 chr15 58653866 58654040 -42726481 - MIR SINE MIR -31 231 56 21 0 0 0 chr15 58654586 58654607 -42725914 + AT_rich Low_complexity Low_complexity 1 21 0 551 231 25 56 chr15 58655057 58655217 -42725304 + MIR SINE MIR 24 178 -84 4961 142 11 6 chr15 58655566 58656433 -42724088 + L1PA15 LINE L1 5279 6150 -15 844 314 63 42 chr15 58656476 58657036 -42723485 - L2 LINE L2 -226 3087 2492 282 29 0 0 chr15 58657036 58657071 -42723450 + (TG)n Simple_repeat Simple_repeat 2 36 0 844 314 63 42 chr15 58657071 58657120 -42723401 - L2 LINE L2 -821 2492 2446 221 258 81 16 chr15 58657329 58657391 -42723130 - L2 LINE L2 -8 3264 3199 401 369 87 36 chr15 58657543 58657901 -42722620 + L2 LINE L2 2896 3271 -1 252 150 0 0 chr15 58658088 58658128 -42722393 - 5S rRNA rRNA -81 40 1 6754 68 15 0 chr15 58658138 58659523 -42720998 + L1PA7 LINE L1 4756 6152 -2 200 233 17 0 chr15 58659531 58659591 -42720930 + A-rich Low_complexity Low_complexity 2 62 0 393 22 0 0 chr15 58659939 58659985 -42720536 + (CA)n Simple_repeat Simple_repeat 2 47 0 509 261 68 0 chr15 58660190 58660351 -42720170 + MER58B DNA MER1_type 170 341 0 1708 130 137 75 chr15 58661431 58661498 -42719023 - MSTA LTR MaLR 0 428 367 1433 90 5 5 chr15 58661498 58661686 -42718835 + L1PA8A LINE L1 5942 6129 -2 1708 130 137 75 chr15 58661686 58662019 -42718502 - MSTA LTR MaLR -61 367 3 891 222 32 16 chr15 58662077 58662262 -42718259 + MER5A DNA MER1_type 2 189 0 300 53 0 0 chr15 58662274 58662312 -42718209 + (CA)n Simple_repeat Simple_repeat 1 38 0 465 221 201 27 chr15 58662326 58662475 -42718046 + MER5B DNA MER1_type 4 178 0 593 245 80 6 chr15 58662788 58662951 -42717570 - MER5B DNA MER1_type -2 176 2 380 277 167 60 chr15 58662979 58663315 -42717206 + HAL1b LINE L1 171 542 -806 681 143 0 45 chr15 58663401 58663534 -42716987 - L1MB3 LINE L1 -279 5904 5778 1516 139 29 29 chr15 58663534 58663796 -42716725 + L1MB3 LINE L1 5908 6181 -2 615 238 94 6 chr15 58663869 58664029 -42716492 - MER5B DNA MER1_type -4 174 1 1293 173 4 31 chr15 58664675 58664900 -42715621 - MER20 DNA MER1_type 0 219 1 284 262 103 56 chr15 58665521 58665628 -42714893 + L2 LINE L2 3158 3269 -3 181 212 0 0 chr15 58665676 58665709 -42714812 + MIR SINE MIR 116 148 -60 258 198 160 66 chr15 58666018 58666124 -42714397 + L2 LINE L2 3197 3312 -1 2325 104 0 3 chr15 58666223 58666532 -42713989 + AluSg SINE Alu 2 309 -1 255 114 0 0 chr15 58666884 58666928 -42713593 + (A)n Simple_repeat Simple_repeat 1 44 0 195 350 145 8 chr15 58667216 58667333 -42713188 - L2 LINE L2 -3 3269 3137 375 264 73 0 chr15 58667455 58667565 -42712956 + MIR SINE MIR 66 183 -79 225 234 0 0 chr15 58667701 58667748 -42712773 + MIR SINE MIR 86 132 -76 1769 246 159 2 chr15 58667786 58668294 -42712227 - MLT1G1 LTR MaLR -7 588 1 402 21 0 0 chr15 58668319 58668366 -42712155 + (TAG)n Simple_repeat Simple_repeat 1 47 0 183 269 115 0 chr15 58668434 58668486 -42712035 - L2 LINE L2 -62 3210 3153 831 182 30 6 chr15 58668607 58668772 -42711749 - MER69A DNA AcHobo -8 169 1 286 259 119 49 chr15 58669213 58669599 -42710922 + L1ME4a LINE L1 5709 6121 0 214 267 17 17 chr15 58669611 58669671 -42710850 + L2 LINE L2 2994 3053 -219 217 258 146 0 chr15 58670156 58670245 -42710276 + MIR SINE MIR 147 248 -14 471 329 106 5 chr15 58670651 58670858 -42709663 - MIR SINE MIR -12 250 23 243 0 0 0 chr15 58671200 58671227 -42709294 + (T)n Simple_repeat Simple_repeat 1 27 0 2654 137 52 5 chr15 58672180 58672588 -42707933 + MSTA LTR MaLR 2 428 0 49 32 0 0 chr15 58673177 58673240 -42707281 + AT_rich Low_complexity Low_complexity 1 63 0 986 9 0 0 chr15 58673304 58673414 -42707107 - AluYb8 SINE Alu 0 318 209 222 37 0 0 chr15 58674367 58674394 -42706127 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 269 297 14 14 chr15 58674398 58674536 -42705985 - L1M4 LINE L1 -1534 4612 4475 263 275 96 54 chr15 58674873 58675208 -42705313 - L1M4 LINE L1 -2106 4040 3692 324 0 0 0 chr15 58675420 58675456 -42705065 + (TA)n Simple_repeat Simple_repeat 2 37 0 2388 100 0 3 chr15 58675466 58675777 -42704744 - AluSg SINE Alu 0 310 1 25 51 0 0 chr15 58675777 58675816 -42704705 + AT_rich Low_complexity Low_complexity 1 39 0 249 244 44 33 chr15 58676082 58676172 -42704349 - HAL1b LINE L1 -924 424 334 740 267 49 44 chr15 58676322 58676712 -42703809 - HAL1 LINE L1 0 2507 2116 419 236 14 40 chr15 58676957 58677105 -42703416 - HAL1 LINE L1 -410 2097 1954 718 305 117 35 chr15 58677110 58677487 -42703034 - MLT1I LTR MaLR -1 408 1 1005 265 132 5 chr15 58677523 58677893 -42702628 - HAL1 LINE L1 -605 1902 1486 541 211 11 50 chr15 58677895 58678075 -42702446 - HAL1 LINE L1 -1228 1279 1107 203 30 0 61 chr15 58678994 58679027 -42701494 + (TTTCC)n Simple_repeat Simple_repeat 5 35 0 1733 178 0 11 chr15 58679027 58679308 -42701213 - AluJb SINE Alu -34 278 1 945 171 68 49 chr15 58679534 58679739 -42700782 + MER3 DNA MER1_type 1 209 0 277 204 0 0 chr15 58679696 58679745 -42700776 - MER3 DNA MER1_type -119 90 42 * 247 149 30 75 chr15 58680169 58680236 -42700285 - L1M4c LINE L1 -6315 69 6 392 243 105 40 chr15 58681129 58681281 -42699240 + MER5A DNA MER1_type 6 167 -22 200 303 141 20 chr15 58681455 58681554 -42698967 + MIR SINE MIR 72 182 -80 183 156 0 0 chr15 58682538 58682570 -42697951 + (TCTA)n Simple_repeat Simple_repeat 4 35 0 531 250 15 52 chr15 58682595 58682731 -42697790 - MIR SINE MIR -120 142 12 688 272 45 18 chr15 58682993 58683227 -42697294 + MIR SINE MIR 21 262 0 402 268 63 24 chr15 58683259 58683386 -42697135 - MIR SINE MIR -13 249 118 718 267 182 52 chr15 58683717 58684162 -42696359 - MLT1H LTR MaLR 0 549 47 574 326 147 35 chr15 58685764 58686392 -42694129 + L1MEd LINE L1 69 766 -5353 1525 258 25 7 chr15 58686565 58687003 -42693518 + L1ME3 LINE L1 5716 6161 -1 322 184 101 18 chr15 58687053 58687162 -42693359 + L1MEd LINE L1 973 1090 -5029 298 274 187 40 chr15 58687243 58687517 -42693004 + L1MEd LINE L1 1114 1630 -860 226 0 59 0 chr15 58687711 58687745 -42692776 + (CA)n Simple_repeat Simple_repeat 1 36 0 297 333 121 10 chr15 58688543 58688741 -42691780 + L2 LINE L2 3005 3224 -48 185 323 15 0 chr15 58688932 58688997 -42691524 - MIR SINE MIR -108 154 89 419 0 0 19 chr15 58691121 58691173 -42689348 + (CA)n Simple_repeat Simple_repeat 2 52 0 354 247 49 12 chr15 58692382 58692463 -42688058 - MIR SINE MIR -156 106 23 829 176 31 0 chr15 58693358 58693517 -42687004 - MER50-int LTR ERV1 -1315 5890 5727 823 180 42 0 chr15 58693581 58693748 -42686773 + LTR49-int LTR ERV1 5596 5769 -562 2186 127 3 6 chr15 58693865 58694179 -42686342 + AluSp SINE Alu 1 313 0 217 233 17 17 chr15 58694809 58694869 -42685652 - L2 LINE L2 -29 3243 3184 2446 80 0 16 chr15 58694883 58695195 -42685326 + AluSc SINE Alu 3 309 0 439 299 52 106 chr15 58695361 58695803 -42684718 - L2 LINE L2 0 3272 2855 1616 200 0 17 chr15 58695893 58696188 -42684333 - AluJo SINE Alu -22 290 1 667 288 91 5 chr15 58697730 58697949 -42682572 - MIR SINE MIR 0 262 25 183 80 0 0 chr15 58698424 58698449 -42682072 + (TC)n Simple_repeat Simple_repeat 2 26 0 539 337 24 24 chr15 58698971 58699176 -42681345 + MIR3 SINE MIR 4 208 0 24 0 0 0 chr15 58699337 58699361 -42681160 + AT_rich Low_complexity Low_complexity 1 24 0 245 197 61 0 chr15 58699445 58699511 -42681010 - MIR SINE MIR -102 160 91 294 235 118 0 chr15 58699593 58699661 -42680860 - Zaphod DNA AcHobo -9 4022 3947 1524 211 77 48 chr15 58699891 58700345 -42680176 - MLT1C LTR MaLR 0 467 1 494 306 91 26 chr15 58700919 58701143 -42679378 - MIR SINE MIR -12 250 11 198 0 0 0 chr15 58701749 58701771 -42678750 + (T)n Simple_repeat Simple_repeat 1 22 0 183 310 35 0 chr15 58703331 58703389 -42677132 - MIR SINE MIR -82 126 67 627 262 147 5 chr15 58703575 58703766 -42676755 + MIR SINE MIR 42 259 -3 387 301 148 25 chr15 58704525 58704738 -42675783 + MIR SINE MIR 20 250 -12 341 254 123 23 chr15 58705621 58705751 -42674770 - MIR SINE MIR -43 219 77 288 0 0 0 chr15 58707330 58707362 -42673159 + (A)n Simple_repeat Simple_repeat 1 32 0 638 282 93 25 chr15 58707497 58707862 -42672659 + L1ME4a LINE L1 5472 5861 -260 212 173 284 0 chr15 58707940 58708021 -42672500 - MIR SINE MIR 0 262 159 1164 261 40 40 chr15 58708106 58708481 -42672040 + LTR16A LTR ERVL 76 450 0 405 240 50 25 chr15 58708541 58708662 -42671859 + HERV16 LTR ERVL 85 208 -4788 639 253 144 39 chr15 58708838 58709143 -42671378 + HERV16 LTR ERVL 468 804 -4192 2328 94 16 3 chr15 58709930 58710239 -42670282 + AluSp SINE Alu 1 313 0 362 287 169 21 chr15 58711023 58711455 -42669066 + L1M4 LINE L1 2425 2920 -3226 1871 242 108 9 chr15 58711593 58712147 -42668374 + MLT1E2 LTR MaLR 14 622 -4 26 30 0 0 chr15 58712235 58712268 -42668253 + AT_rich Low_complexity Low_complexity 1 33 0 702 299 63 34 chr15 58712269 58712794 -42667727 - L1ME LINE L1 -3460 2620 2081 1370 220 16 28 chr15 58713302 58713625 -42666896 + MLT1C LTR MaLR 147 465 -2 941 301 21 38 chr15 58713704 58714090 -42666431 - L1ME LINE L1 -5448 622 243 395 350 6 11 chr15 58714091 58714271 -42666250 - L1ME LINE L1 -5871 199 21 255 269 64 39 chr15 58714273 58714351 -42666170 + MER5B DNA MER1_type 99 178 0 206 294 20 0 chr15 58715504 58715555 -42664966 - L3 LINE CR1 -197 1380 1329 216 0 0 0 chr15 58716676 58716700 -42663821 + (A)n Simple_repeat Simple_repeat 1 24 0 231 330 30 20 chr15 58716964 58717064 -42663457 - MIR SINE MIR -10 252 152 220 225 95 0 chr15 58718396 58718472 -42662049 - MIR SINE MIR -95 113 37 423 327 0 7 chr15 58718590 58718740 -42661781 - MIR SINE MIR -70 192 44 253 184 58 92 chr15 58718785 58718872 -42661649 - MIR SINE MIR -67 195 112 492 257 75 53 chr15 58718883 58719070 -42661451 - MIR3 SINE MIR -5 203 13 255 194 0 148 chr15 58719119 58719141 -42661380 + MIR SINE MIR 102 126 -136 2108 159 31 28 chr15 58719141 58719530 -42660991 - MLT1B LTR MaLR 0 390 1 255 194 0 148 chr15 58719530 58719615 -42660906 + MIR SINE MIR 126 193 -69 433 243 69 7 chr15 58720330 58720474 -42660047 + MIR3 SINE MIR 35 187 -21 228 274 123 9 chr15 58721146 58721252 -42659269 + MIR SINE MIR 64 181 -81 206 323 108 0 chr15 58721497 58721590 -42658931 + L2 LINE L2 3193 3295 -18 635 314 77 8 chr15 58722824 58723085 -42657436 + MER69 DNA AcHobo 116 394 -2132 * 669 214 7 0 chr15 58723084 58723224 -42657297 + MER69 DNA AcHobo 1947 2087 -439 4809 186 39 9 chr15 58723224 58723431 -42657090 - L1M3f LINE L1 -4378 950 751 2853 0 0 0 chr15 58723431 58723732 -42656789 - AluYa5 SINE Alu -10 301 1 4809 186 39 9 chr15 58723732 58724434 -42656087 - L1M3f LINE L1 -4577 751 14 1178 236 152 3 chr15 58724444 58724800 -42655721 + MER69 DNA AcHobo 2073 2481 -45 351 200 361 8 chr15 58725345 58725475 -42655046 - MIR SINE MIR -10 252 77 427 300 61 17 chr15 58727955 58728135 -42652386 + MIR SINE MIR 75 262 0 816 93 0 0 chr15 58728355 58728463 -42652058 + MLT1C LTR MaLR 1 108 -359 3596 202 105 57 chr15 58728464 58729447 -42651074 + MLT1C-int LTR MaLR 338 1367 -4 859 148 0 54 chr15 58729453 58729602 -42650919 + MLT1C LTR MaLR 3 143 -324 3078 51 26 10 chr15 58729602 58729993 -42650528 + THE1A-int LTR MaLR 1184 1580 0 2793 99 3 0 chr15 58729993 58730347 -42650174 + THE1A LTR MaLR 1 355 0 1363 197 108 30 chr15 58730347 58730652 -42649869 + MLT1C LTR MaLR 139 467 0 1290 224 72 28 chr15 58731011 58731332 -42649189 + MER2 DNA MER2_type 1 335 -10 209 205 0 0 chr15 58731332 58731371 -42649150 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 210 335 124 49 chr15 58733617 58733987 -42646534 - L2 LINE L2 -349 2965 2568 324 309 36 77 chr15 58734603 58734797 -42645724 - MIR SINE MIR -42 220 35 327 222 89 0 chr15 58734864 58734954 -42645567 - L1MC4 LINE L1 -1331 6711 6614 305 196 33 54 chr15 58734873 58734965 -42645556 + L1MC4 LINE L1 6614 6703 -1339 * 189 280 20 0 chr15 58737129 58737179 -42643342 + L3 LINE CR1 1516 1566 -11 2138 163 102 13 chr15 58737841 58738314 -42642207 + MER69 DNA AcHobo 2010 2524 -2 602 258 86 27 chr15 58738351 58738723 -42641798 + L1MC4a LINE L1 864 1257 -4862 688 183 17 9 chr15 58739169 58739284 -42641237 + FLAM_A SINE Alu 1 116 -17 420 289 62 63 chr15 58739440 58739811 -42640710 + L1MC4a LINE L1 4295 4666 -1463 2134 120 0 13 chr15 58739811 58740120 -42640401 + AluSx SINE Alu 1 305 -7 420 289 62 63 chr15 58740120 58740285 -42640236 + L1MC4a LINE L1 4666 4830 -1299 324 309 53 7 chr15 58740390 58740542 -42639979 + L1MC4a LINE L1 4874 5032 -1097 495 73 0 0 chr15 58740555 58740623 -42639898 + (TA)n Simple_repeat Simple_repeat 2 69 0 4699 226 63 15 chr15 58740878 58742583 -42637938 + L1MC4a LINE L1 5237 7791 0 1601 109 0 13 chr15 58742865 58743094 -42637427 - AluSg/x SINE Alu -11 299 74 277 280 32 21 chr15 58743211 58743304 -42637217 - MLT1J2 LTR MaLR -14 436 343 243 289 86 70 chr15 58743357 58743485 -42637036 - MLT1I LTR MaLR -189 220 91 596 276 116 37 chr15 58743518 58743695 -42636826 + L1ME4a LINE L1 2367 2529 -3600 2792 124 30 26 chr15 58743695 58744121 -42636400 - MSTA LTR MaLR 0 428 1 596 276 116 37 chr15 58744121 58744403 -42636118 + L1ME4a LINE L1 2529 2787 -3342 2157 112 7 3 chr15 58744403 58744699 -42635822 - AluSx SINE Alu -15 297 1 596 276 116 37 chr15 58744699 58744948 -42635573 + L1ME4a LINE L1 2787 3132 -2997 438 294 117 19 chr15 58745274 58745853 -42634668 + L1ME4a LINE L1 4916 5624 -480 359 289 48 6 chr15 58746098 58746242 -42634279 + L1ME4a LINE L1 5655 5807 -297 2782 93 3 0 chr15 58746242 58746597 -42633924 + L1PB1 LINE L1 5794 6149 -2 359 289 48 6 chr15 58746597 58746611 -42633910 + L1ME4a LINE L1 5807 5819 -285 280 64 43 0 chr15 58746732 58746779 -42633742 + (CA)n Simple_repeat Simple_repeat 1 49 0 336 247 234 25 chr15 58747292 58747450 -42633071 + MIR SINE MIR 1 191 -71 * 390 337 122 0 chr15 58747448 58747620 -42632901 - MIR SINE MIR 0 262 70 562 274 102 52 chr15 58748294 58748397 -42632124 + L1ME4a LINE L1 5738 5834 -287 1864 173 3 3 chr15 58748397 58748698 -42631823 - AluSx SINE Alu -11 301 1 562 274 102 52 chr15 58748698 58748717 -42631804 + L1ME4a LINE L1 5834 5851 -270 3077 119 14 0 chr15 58748717 58749145 -42631376 + MER57B LTR ERV1 1 434 0 562 274 102 52 chr15 58749145 58749383 -42631138 + L1ME4a LINE L1 5851 6117 -4 210 331 83 48 chr15 58749474 58749619 -42630902 + MIR SINE MIR 34 183 -79 321 26 0 0 chr15 58749739 58749777 -42630744 + (CA)n Simple_repeat Simple_repeat 2 39 0 1501 138 121 32 chr15 58750551 58750833 -42629688 + AluSx SINE Alu 1 307 -5 325 293 130 93 chr15 58751009 58751515 -42629006 + L2 LINE L2 2590 3136 -136 2040 128 0 3 chr15 58751515 58751862 -42628659 - AluSx SINE Alu 0 346 1 325 293 130 93 chr15 58751862 58752005 -42628516 + L2 LINE L2 3136 3272 0 337 155 99 28 chr15 58752132 58752203 -42628318 + MLT1A1 LTR MaLR 2 77 -351 2161 142 15 3 chr15 58752226 58752564 -42627957 + MER47A DNA MER2_type 23 364 -2 920 201 58 65 chr15 58752567 58752659 -42627862 + MLT1A1 LTR MaLR 62 153 -212 2021 113 67 0 chr15 58752659 58752941 -42627580 + AluSx SINE Alu 1 301 -11 920 201 58 65 chr15 58752941 58753198 -42627323 + MLT1A1 LTR MaLR 153 365 0 270 306 148 34 chr15 58754422 58754631 -42625890 + MIR SINE MIR 20 252 -10 198 0 0 0 chr15 58755578 58755600 -42624921 + (T)n Simple_repeat Simple_repeat 1 22 0 214 279 127 0 chr15 58755646 58755725 -42624796 - MIR SINE MIR -68 140 61 291 240 30 30 chr15 58755836 58755936 -42624585 - L1ME4a LINE L1 -2 6119 6020 1413 260 210 59 chr15 58756103 58757116 -42623405 - L2 LINE L2 -1568 1746 581 1998 157 0 0 chr15 58757190 58757495 -42623026 - AluSx SINE Alu -7 305 1 1076 128 0 0 chr15 58757761 58757953 -42622568 - AluSg/x SINE Alu 0 325 134 2205 131 0 6 chr15 58757986 58758299 -42622222 - AluSx SINE Alu 0 312 2 233 295 0 0 chr15 58758481 58758542 -42621979 - MER5A DNA MER1_type 0 189 129 182 37 37 0 chr15 58758871 58758898 -42621623 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 766 231 23 0 chr15 58759915 58760088 -42620433 - MIR SINE MIR -5 257 81 274 279 139 80 chr15 58760129 58760466 -42620055 - L2 LINE L2 -18 3254 2898 1090 192 65 19 chr15 58761219 58761347 -42619174 - MER58A DNA MER1_type -2196 224 81 198 0 0 0 chr15 58761347 58761369 -42619152 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 1090 192 65 19 chr15 58761369 58761454 -42619067 - MER58A DNA MER1_type -2339 81 1 180 290 32 54 chr15 58761758 58761851 -42618670 - MIR SINE MIR -140 122 32 418 299 43 27 chr15 58762489 58762673 -42617848 - MER5A DNA MER1_type -2 187 1 430 269 94 12 chr15 58763341 58763501 -42617020 + LTR33 LTR ERVL 306 478 -43 413 298 95 6 chr15 58764064 58764232 -42616289 + MER117 DNA MER1_type 5 187 -10 387 289 56 0 chr15 58767043 58767185 -42613336 - MIR SINE MIR -3 259 110 190 194 0 0 chr15 58767456 58767487 -42613034 + MIR SINE MIR 15 45 -217 387 289 56 0 chr15 58767987 58768129 -42612392 - MIR SINE MIR -3 259 110 903 246 81 16 chr15 58768384 58768635 -42611886 + MIR SINE MIR 2 262 0 357 258 78 18 chr15 58769325 58769492 -42611029 - L1ME4a LINE L1 -234 5887 5711 1888 159 0 16 chr15 58770024 58770332 -42610189 + AluJb SINE Alu 1 303 -9 228 263 75 12 chr15 58770450 58770530 -42609991 + MLT1K LTR MaLR 162 246 -342 369 0 0 0 chr15 58770862 58770875 -42609646 + (TG)n Simple_repeat Simple_repeat 1 54 0 369 0 0 0 chr15 58770875 58770916 -42609605 + (TG)n Simple_repeat Simple_repeat 1 41 0 244 291 0 0 chr15 58772214 58772269 -42608252 + (ATG)n Simple_repeat Simple_repeat 2 56 0 216 204 23 0 chr15 58772507 58772551 -42607970 + GA-rich Low_complexity Low_complexity 3 47 0 15410 132 40 11 chr15 58773192 58773418 -42607103 - Tigger1 DNA MER2_type 0 2418 2200 1529 196 21 11 chr15 58773418 58773738 -42606783 + AluJb SINE Alu 1 323 0 15410 132 40 11 chr15 58773738 58775861 -42604660 - Tigger1 DNA MER2_type -218 2200 1 356 276 97 8 chr15 58776383 58776517 -42604004 - MIR SINE MIR -14 248 103 237 125 196 36 chr15 58776763 58776819 -42603702 - L2 LINE L2 -17 3255 3191 1481 199 65 46 chr15 58777810 58778177 -42602344 + MLT1A2 LTR MaLR 1 374 0 1361 195 65 0 chr15 58778522 58778705 -42601816 - AluJb SINE Alu -4 308 100 282 29 0 0 chr15 58778705 58778740 -42601781 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1361 195 65 0 chr15 58778740 58778833 -42601688 - AluJb SINE Alu -212 100 14 672 177 88 0 chr15 58778849 58778962 -42601559 - FLAM_C SINE Alu -10 123 1 504 230 158 20 chr15 58779558 58779710 -42600811 - MER5A DNA MER1_type -8 181 9 183 80 0 0 chr15 58779924 58779949 -42600572 + (T)n Simple_repeat Simple_repeat 1 25 0 356 340 76 71 chr15 58780758 58781401 -42599120 + L2 LINE L2 2557 3222 -50 401 331 97 6 chr15 58783289 58783464 -42597057 + MIR SINE MIR 2 192 -70 2128 109 3 0 chr15 58783678 58783961 -42596560 + AluSx SINE Alu 3 286 -26 23 0 0 0 chr15 58783961 58783984 -42596537 + AT_rich Low_complexity Low_complexity 1 23 0 473 307 98 12 chr15 58784192 58784355 -42596166 + MIR3 SINE MIR 26 202 -6 274 259 119 43 chr15 58784726 58784893 -42595628 + MIR SINE MIR 31 206 -56 327 49 0 0 chr15 58785315 58785356 -42595165 + (TG)n Simple_repeat Simple_repeat 2 42 0 297 118 0 0 chr15 58787275 58787326 -42593195 + (CA)n Simple_repeat Simple_repeat 2 52 0 846 224 57 5 chr15 58787347 58787557 -42592964 - MIR SINE MIR -10 252 32 790 275 102 62 chr15 58787779 58788183 -42592338 + MLT1J1 LTR MaLR 7 426 -20 538 226 43 38 chr15 58788908 58789005 -42591516 - LTR67 LTR ERVL -5 552 452 2013 172 13 54 chr15 58789005 58789394 -42591127 - MLT1A2 LTR MaLR -1 373 1 538 226 43 38 chr15 58789394 58789482 -42591039 - LTR67 LTR ERVL -105 452 366 476 332 18 8 chr15 58789782 58790042 -42590479 - MIR SINE MIR -17 245 19 772 248 55 20 chr15 58793449 58793651 -42586870 + MIR SINE MIR 27 235 -27 316 327 112 56 chr15 58795879 58796130 -42584391 - L2 LINE L2 -161 3111 2875 2343 105 0 0 chr15 58796130 58796434 -42584087 + AluSx SINE Alu 1 304 -8 316 327 112 56 chr15 58796434 58796877 -42583644 - L2 LINE L2 -397 2875 2376 558 275 29 63 chr15 58797056 58797372 -42583149 - MLT1L LTR MaLR -255 360 56 351 293 127 49 chr15 58797390 58797714 -42582807 - MLT1I LTR MaLR -57 352 4 516 296 97 10 chr15 58797756 58797962 -42582559 - L3 LINE CR1 -137 1440 1217 268 313 174 9 chr15 58799080 58799195 -42581326 - L2 LINE L2 0 3313 3180 1963 151 7 0 chr15 58799232 58799530 -42580991 + AluSx SINE Alu 1 300 -12 921 288 0 0 chr15 58799534 58799763 -42580758 - MIR SINE MIR -11 251 23 344 253 75 70 chr15 58800141 58800327 -42580194 - MIR3 SINE MIR -21 187 1 230 218 68 53 chr15 58801766 58801899 -42578622 - Charlie7 DNA MER1_type -35 2577 2443 1376 156 0 0 chr15 58802023 58802247 -42578274 + AluSg/x SINE Alu 83 306 0 222 380 116 0 chr15 58802381 58802502 -42578019 + MIR SINE MIR 26 160 -102 402 284 97 15 chr15 58802874 58803008 -42577513 - L2 LINE L2 -940 2374 2230 208 376 20 0 chr15 58803173 58803274 -42577247 + L2 LINE L2 3190 3292 -21 189 233 0 0 chr15 58804220 58804263 -42576258 + MIR SINE MIR 139 181 -81 551 104 0 0 chr15 58804284 58804361 -42576160 + Alu SINE Alu 229 305 -4 22 35 0 0 chr15 58805144 58805173 -42575348 + AT_rich Low_complexity Low_complexity 1 29 0 228 305 29 19 chr15 58806256 58806361 -42574160 + L1MEc LINE L1 14 119 -6277 273 109 22 0 chr15 58806362 58806408 -42574113 - MADE1 DNA Mariner 0 80 34 1963 263 89 87 chr15 58806482 58807052 -42573469 + L1MEc LINE L1 159 727 -5669 1743 164 14 0 chr15 58807052 58807345 -42573176 + AluJb SINE Alu 1 297 -15 1963 263 89 87 chr15 58807345 58807465 -42573056 + L1MEc LINE L1 727 845 -5551 2248 118 0 0 chr15 58807465 58807769 -42572752 + AluSq SINE Alu 1 304 -9 1963 263 89 87 chr15 58807769 58809173 -42571348 + L1MEc LINE L1 845 2257 -4139 2517 257 95 14 chr15 58809218 58810177 -42570344 + L1MEc LINE L1 2345 3551 -2664 1884 121 6 86 chr15 58810177 58810516 -42570005 - AluSx SINE Alu 0 312 1 2517 257 95 14 chr15 58810516 58810915 -42569606 + L1MEc LINE L1 3551 3916 -2299 1029 242 38 38 chr15 58810916 58811312 -42569209 - L1M4 LINE L1 -1621 4525 4130 3575 117 36 0 chr15 58811336 58811859 -42568662 + L1PA16 LINE L1 5625 6166 0 1452 246 32 61 chr15 58812129 58812754 -42567767 - L1MDb LINE L1 -5029 1514 908 289 355 33 39 chr15 58813286 58813593 -42566928 - L1MDb LINE L1 -6211 329 25 1558 186 7 11 chr15 58813953 58814232 -42566289 + AluJo SINE Alu 1 278 -34 625 44 11 11 chr15 58814234 58814324 -42566197 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 237 372 76 31 chr15 58816212 58816502 -42564019 - L2 LINE L2 -166 3106 2804 3531 193 43 25 chr15 58816926 58817220 -42563301 - L1ME1 LINE L1 -6 6160 5873 2366 66 3 30 chr15 58817220 58817525 -42562996 + AluY SINE Alu 3 299 -12 3531 193 43 25 chr15 58817525 58818037 -42562484 - L1ME1 LINE L1 -293 5873 5339 237 278 139 19 chr15 58818037 58818145 -42562376 - L2 LINE L2 -1000 2314 2194 612 65 0 0 chr15 58818405 58818482 -42562039 - L1PB2 LINE L1 -191 5960 5884 2349 71 0 0 chr15 58818492 58818798 -42561723 - AluSc SINE Alu 0 306 1 703 207 0 7 chr15 58818802 58818947 -42561574 + Charlie4 DNA MER1_type 1818 1961 0 350 263 98 41 chr15 58818984 58819178 -42561343 - LTR33 LTR ERVL -310 211 7 1795 148 6 32 chr15 58819915 58820190 -42560331 + AluJo SINE Alu 10 278 -34 186 71 0 0 chr15 58820190 58820218 -42560303 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1795 148 6 32 chr15 58820218 58820253 -42560268 + AluJo SINE Alu 278 312 0 1028 272 18 88 chr15 58820288 58820315 -42560206 - Charlie4 DNA MER1_type -318 1643 1616 1788 163 0 0 chr15 58820315 58820637 -42559884 - AluJb SINE Alu 0 322 1 1028 272 18 88 chr15 58820637 58821291 -42559230 - Charlie4 DNA MER1_type -345 1616 1008 6047 120 17 35 chr15 58821299 58822342 -42558179 - L1MA6 LINE L1 0 6300 5276 537 322 20 4 chr15 58822478 58822733 -42557788 - Charlie4 DNA MER1_type -1071 890 632 866 176 38 145 chr15 58823314 58823491 -42557030 - Charlie4 DNA MER1_type -218 290 160 1533 139 143 4 chr15 58823491 58823757 -42556764 + AluSq SINE Alu 1 303 0 866 176 38 145 chr15 58823757 58823897 -42556624 - Charlie4 DNA MER1_type -348 160 7 1137 325 54 47 chr15 58823927 58824924 -42555597 + ERVL LTR ERVL 4344 5389 -375 664 238 17 39 chr15 58825111 58825292 -42555229 + LTR33 LTR ERVL 1 177 -344 22 35 0 0 chr15 58827355 58827384 -42553137 + AT_rich Low_complexity Low_complexity 1 29 0 5503 146 47 25 chr15 58827580 58829467 -42551054 - L1MA8 LINE L1 0 6291 4353 846 208 87 14 chr15 58829937 58830225 -42550296 - MER69 DNA AcHobo -68 2458 2150 3439 219 91 48 chr15 58830231 58831223 -42549298 - L1MC4a LINE L1 -6 7802 6759 2046 54 0 0 chr15 58831223 58831463 -42549058 - AluY SINE Alu -4 307 68 3439 219 91 48 chr15 58831463 58831540 -42548981 - L1MC4a LINE L1 -1049 6759 6687 2062 207 74 27 chr15 58831536 58832049 -42548472 - L1ME1 LINE L1 -275 5891 5355 * 2514 205 58 11 chr15 58832049 58832699 -42547822 - MER69 DNA AcHobo -388 2138 1458 2046 98 0 57 chr15 58832702 58833020 -42547501 + AluSg SINE Alu 1 300 -10 556 266 19 13 chr15 58833026 58833184 -42547337 - MER69 DNA AcHobo -944 282 124 254 357 115 19 chr15 58834545 58834702 -42545819 + L2 LINE L2 3100 3271 -1 252 182 0 0 chr15 58834722 58834766 -42545755 - L2 LINE L2 -16 3297 3254 732 253 53 47 chr15 58834767 58835107 -42545414 - L1MEd LINE L1 -4862 1257 916 307 346 50 17 chr15 58835146 58835386 -42545135 - L1MEd LINE L1 -5208 911 664 547 328 32 16 chr15 58836735 58836988 -42543533 - MIR SINE MIR -1 261 5 252 250 14 0 chr15 58838339 58838411 -42542110 + (CA)n Simple_repeat Simple_repeat 2 74 0 322 237 77 45 chr15 58838548 58838704 -42541817 + L1MC/D LINE L1 5350 5510 -2298 288 0 0 0 chr15 58838903 58838935 -42541586 + (CA)n Simple_repeat Simple_repeat 2 33 0 459 249 39 68 chr15 58839366 58839603 -42540918 - MIR SINE MIR -30 232 3 1013 160 49 36 chr15 58839639 58839864 -42540657 + L1M4 LINE L1 4563 4790 -1356 6942 161 13 6 chr15 58839864 58841022 -42539499 - Ricksha_b DNA DNA 0 1254 89 3041 214 59 47 chr15 58841211 58842167 -42538354 - L1ME3 LINE L1 -21 6141 5190 4398 124 13 14 chr15 58842167 58842879 -42537642 - L1PA16 LINE L1 -3 6163 5453 186 50 75 0 chr15 58843658 58843698 -42536823 + (TA)n Simple_repeat Simple_repeat 1 43 0 464 211 24 89 chr15 58845686 58845809 -42534712 + MIR SINE MIR 78 192 -70 1132 234 0 4 chr15 58846313 58846539 -42533982 - MIR SINE MIR -21 241 17 24 91 0 0 chr15 58846885 58846951 -42533570 + AT_rich Low_complexity Low_complexity 1 66 0 201 310 60 30 chr15 58847119 58847219 -42533302 - MIR SINE MIR -128 134 32 2285 110 0 7 chr15 58847816 58848126 -42532395 - AluSx SINE Alu -4 308 1 5595 222 32 14 chr15 58848126 58850369 -42530152 - L1M1 LINE L1 -4049 2279 14 2248 113 0 0 chr15 58851084 58851385 -42529136 - AluSq SINE Alu -12 301 1 193 373 63 24 chr15 58852095 58852221 -42528300 - L2 LINE L2 -4 3268 3138 204 40 0 0 chr15 58852250 58852275 -42528246 + (TG)n Simple_repeat Simple_repeat 2 26 0 1294 201 34 40 chr15 58853013 58853311 -42527210 - AluJo SINE Alu -16 296 1 373 321 93 72 chr15 58854901 58855261 -42525260 - L2 LINE L2 -4 3268 2896 2771 0 0 7 chr15 58855261 58855566 -42524955 + AluYa5 SINE Alu 1 303 -8 373 321 93 72 chr15 58855566 58855622 -42524899 - L2 LINE L2 -376 2896 2843 280 277 21 35 chr15 58855673 58855814 -42524707 - MER103 DNA DNA -11 155 17 38 51 0 0 chr15 58856506 58856565 -42523956 + AT_rich Low_complexity Low_complexity 1 59 0 1565 174 206 9 chr15 58857547 58857983 -42522538 + Charlie1b DNA MER1_type 1 522 -1 346 181 60 0 chr15 58859336 58859419 -42521102 + L1ME1 LINE L1 6074 6161 -5 23 33 0 0 chr15 58859832 58859862 -42520659 + AT_rich Low_complexity Low_complexity 1 30 0 906 216 25 25 chr15 58860452 58860656 -42519865 - MER20 DNA MER1_type 0 219 16 243 61 0 0 chr15 58860743 58860776 -42519745 + (TG)n Simple_repeat Simple_repeat 2 34 0 1724 153 21 38 chr15 58860974 58861261 -42519260 - AluJo SINE Alu -30 282 1 238 65 22 22 chr15 58861454 58861500 -42519021 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 4058 35 2 0 chr15 58861500 58861979 -42518542 - L1PA3 LINE L1 -24 6131 5652 235 260 87 87 chr15 58862831 58862981 -42517540 - L2 LINE L2 -4 3309 3160 769 294 77 4 chr15 58863402 58863637 -42516884 - MIR SINE MIR 0 262 11 315 325 42 8 chr15 58863902 58864022 -42516499 + L1M4 LINE L1 5078 5201 -945 314 83 62 0 chr15 58864023 58864071 -42516450 + L1P4 LINE L1 5453 5503 -660 1296 218 67 102 chr15 58866145 58866816 -42513705 + L1MC4 LINE L1 7407 7995 0 2037 138 0 16 chr15 58866826 58867131 -42513390 + AluSx SINE Alu 1 300 -12 2129 128 0 10 chr15 58867139 58867427 -42513094 + AluSx SINE Alu 1 287 -25 441 0 0 0 chr15 58867427 58867476 -42513045 + (CA)n Simple_repeat Simple_repeat 2 50 0 2129 128 0 10 chr15 58867476 58867500 -42513021 + AluSx SINE Alu 287 310 -2 32 75 0 0 chr15 58868648 58868715 -42511806 + AT_rich Low_complexity Low_complexity 1 67 0 439 321 15 23 chr15 58870215 58870346 -42510175 - MIR SINE MIR -126 136 7 260 301 27 0 chr15 58870365 58870438 -42510083 + MIR3 SINE MIR 104 178 -30 271 349 0 0 chr15 58871789 58871872 -42508649 - L2 LINE L2 -22 3291 3209 330 26 0 0 chr15 58872286 58872325 -42508196 + (TA)n Simple_repeat Simple_repeat 1 39 0 2031 132 7 0 chr15 58872326 58872613 -42507908 - AluSg SINE Alu -21 289 1 207 100 300 0 chr15 58873001 58873041 -42507480 + L2 LINE L2 3262 3313 0 1253 186 57 93 chr15 58873141 58873527 -42506994 - MLT1A2 LTR MaLR 0 374 3 346 279 82 19 chr15 58873675 58873833 -42506688 + MIR3 SINE MIR 7 174 -34 193 346 50 0 chr15 58874421 58874522 -42505999 - MIR SINE MIR -80 182 77 299 241 116 36 chr15 58874621 58874733 -42505788 + MIR SINE MIR 17 137 -71 710 231 262 39 chr15 58874733 58875088 -42505433 + MER57A LTR ERV1 1 403 0 217 316 51 8 chr15 58875492 58875609 -42504912 + MIR SINE MIR 13 134 -128 192 328 8 42 chr15 58876756 58876875 -42503646 - L2 LINE L2 -6 3307 3193 687 245 97 25 chr15 58877277 58877473 -42503048 + MER63A DNA MER1_type 1 210 0 206 217 0 0 chr15 58877678 58877724 -42502797 - L2 LINE L2 0 3313 3268 600 111 134 111 chr15 58877993 58878165 -42502356 - MER106B DNA MER1_type -15 1044 46 1867 130 70 0 chr15 58879381 58879666 -42500855 - AluSx SINE Alu -7 305 1 2302 124 71 28 chr15 58879715 58880150 -42500371 + LTR24C LTR ERV1 1 454 -181 244 318 66 13 chr15 58881069 58881220 -42499301 - L1ME LINE L1 -273 5897 5739 2147 111 3 3 chr15 58881790 58882088 -42498433 + AluSx SINE Alu 1 298 -14 23 0 0 0 chr15 58882489 58882512 -42498009 + AT_rich Low_complexity Low_complexity 1 23 0 43 47 0 0 chr15 58884357 58884421 -42496100 + AT_rich Low_complexity Low_complexity 1 64 0 5249 162 22 22 chr15 58884926 58886852 -42493669 + L1PA16 LINE L1 4221 6147 -19 1937 135 83 9 chr15 58886993 58887342 -42493179 + THE1C LTR MaLR 1 375 0 234 329 53 13 chr15 58888245 58888321 -42492200 + L2 LINE L2 3194 3272 0 2245 113 0 3 chr15 58890476 58890778 -42489743 + AluSq SINE Alu 1 301 -12 21 57 0 0 chr15 58892039 58892074 -42488447 + AT_rich Low_complexity Low_complexity 1 35 0 412 327 124 26 chr15 58892207 58892473 -42488048 - L3 LINE CR1 -3 1574 1283 317 242 178 68 chr15 58892470 58892734 -42487787 + L2 LINE L2 3020 3312 -1 * 323 337 58 23 chr15 58892757 58892929 -42487592 - L3 LINE CR1 -366 1211 1034 21 71 0 0 chr15 58893526 58893568 -42486953 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr15 58893875 58893897 -42486624 + AT_rich Low_complexity Low_complexity 1 22 0 43 35 0 0 chr15 58894089 58894146 -42486375 + AT_rich Low_complexity Low_complexity 1 57 0 1137 152 45 0 chr15 58894146 58894344 -42486177 - MER2 DNA MER2_type -138 207 1 817 258 0 28 chr15 58894802 58895019 -42485502 + MIR SINE MIR 11 221 -41 21 36 0 0 chr15 58895023 58895051 -42485470 + AT_rich Low_complexity Low_complexity 1 28 0 1068 235 107 63 chr15 58895751 58896245 -42484276 + MLT1H1 LTR MaLR 40 555 0 1228 163 0 5 chr15 58896336 58896526 -42483995 + AluJb SINE Alu 1 189 -123 271 314 35 77 chr15 58896588 58896757 -42483764 - L2 LINE L2 -217 3096 2935 335 293 123 0 chr15 58896794 58896900 -42483621 + L2 LINE L2 3195 3313 0 1051 243 108 52 chr15 58896902 58897071 -42483450 - L2 LINE L2 -429 2885 2727 2139 107 4 0 chr15 58897071 58897383 -42483138 - AluSx SINE Alu 0 313 1 1051 243 108 52 chr15 58897383 58897619 -42482902 - L2 LINE L2 -587 2727 2456 288 211 88 26 chr15 58897773 58897887 -42482634 - L1ME4a LINE L1 -1 6120 6000 219 226 0 0 chr15 58898271 58898324 -42482197 + (TG)n Simple_repeat Simple_repeat 2 54 0 475 219 23 55 chr15 58898829 58898957 -42481564 - L2 LINE L2 0 3313 3190 221 253 95 42 chr15 58899071 58899166 -42481355 - MIR SINE MIR -57 151 52 426 251 110 47 chr15 58900580 58900771 -42479750 + L2 LINE L2 3084 3286 -27 431 271 15 0 chr15 58900938 58901071 -42479450 + L1M4 LINE L1 2971 3105 -3041 3679 42 4 0 chr15 58901171 58901626 -42478895 + L1PA4 LINE L1 5699 6155 0 1331 183 7 39 chr15 58902040 58902325 -42478196 + AluJb SINE Alu 24 299 -13 269 185 15 0 chr15 58902329 58902394 -42478127 + A-rich Low_complexity Low_complexity 5 70 0 2366 78 0 16 chr15 58904993 58905300 -42475221 - AluSg1 SINE Alu -7 302 1 22 0 0 0 chr15 58907028 58907050 -42473471 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr15 58907789 58907814 -42472707 + AT_rich Low_complexity Low_complexity 1 25 0 196 288 0 41 chr15 58908050 58908123 -42472398 - MIR SINE MIR -119 143 74 2285 74 0 3 chr15 58908159 58908471 -42472050 - AluY SINE Alu 0 311 1 226 240 120 64 chr15 58910798 58910888 -42469633 + MIR SINE MIR 20 121 -141 2276 60 0 0 chr15 58910888 58911178 -42469343 - AluY SINE Alu 0 306 17 226 240 120 64 chr15 58911178 58911211 -42469310 + MIR SINE MIR 121 151 -111 2904 19 0 2 chr15 58911958 58912325 -42468196 - L1PA8A LINE L1 -392 5739 5379 2242 53 7 3 chr15 58912325 58912599 -42467922 + L1PA3 LINE L1 5870 6155 0 23 33 0 0 chr15 58913120 58913150 -42467371 + AT_rich Low_complexity Low_complexity 1 30 0 277 326 0 21 chr15 58913795 58913890 -42466631 - MIR3 SINE MIR -3 205 113 194 333 65 9 chr15 58913951 58914059 -42466462 - L2 LINE L2 -225 3047 2934 219 274 48 60 chr15 58914405 58914489 -42466032 - MIR SINE MIR -62 146 64 34 42 0 0 chr15 58914618 58914666 -42465855 + AT_rich Low_complexity Low_complexity 1 48 0 187 30 30 30 chr15 58915071 58915104 -42465417 + (TTTTTA)n Simple_repeat Simple_repeat 4 36 0 2504 31 0 0 chr15 58915110 58915402 -42465119 - L1PA5 LINE L1 -7 6147 5856 1242 33 0 0 chr15 58915400 58915555 -42464966 + L1PA5 LINE L1 5704 5858 -297 2156 101 7 3 chr15 58915736 58916023 -42464498 + AluSg SINE Alu 1 288 -22 1204 192 38 21 chr15 58916318 58916609 -42463912 - MER46C DNA MER2_type -42 296 1 264 231 0 0 chr15 58916866 58916944 -42463577 + (TA)n Simple_repeat Simple_repeat 1 78 0 452 286 149 26 chr15 58917090 58917244 -42463277 - MER5A DNA MER1_type -6 183 11 883 198 19 0 chr15 58917324 58917486 -42463035 + FAM SINE Alu 1 165 -10 288 308 75 9 chr15 58918472 58918579 -42461942 - L3 LINE CR1 -11 1566 1453 202 290 0 58 chr15 58919687 58919756 -42460765 - MIR3 SINE MIR -141 67 3 301 304 29 0 chr15 58919757 58919859 -42460662 + L1M4c LINE L1 2369 2473 -3911 6912 163 52 34 chr15 58919980 58921895 -42458626 - L1MA4 LINE L1 -11 7708 5707 1711 164 7 40 chr15 58921895 58922199 -42458322 - AluJb SINE Alu -18 294 1 6912 163 52 34 chr15 58922199 58922942 -42457579 - L1MA4 LINE L1 -2012 5707 4978 40454 37 22 3 chr15 58922968 58929006 -42451515 - L1PA3 LINE L1 0 6155 1 5789 174 32 33 chr15 58929007 58929162 -42451359 - L1MA4 LINE L1 -2570 4995 4841 2448 110 46 7 chr15 58929162 58929579 -42450942 - L1MA5A LINE L1 -10 6287 5855 5789 174 32 33 chr15 58929579 58930908 -42449613 - L1MA4 LINE L1 -2724 4841 3510 209 320 35 36 chr15 58931676 58931817 -42448704 + MIR SINE MIR 3 149 -59 190 283 81 10 chr15 58932548 58932647 -42447874 - L2 LINE L2 -30 3242 3137 366 228 50 0 chr15 58932894 58932995 -42447526 - MER105 DNA DNA -68 136 31 254 308 33 25 chr15 58934477 58934597 -42445924 - MIR SINE MIR -4 258 138 1304 147 67 29 chr15 58934708 58934946 -42445575 + AluJb SINE Alu 1 247 -65 523 266 18 41 chr15 58934973 58935142 -42445379 - MER5B DNA MER1_type -9 169 5 533 254 0 9 chr15 58935910 58936024 -42444497 + MER81 DNA DNA 2 114 0 365 304 106 41 chr15 58936737 58937293 -42443228 - L1MC4a LINE L1 -1959 5849 5258 208 311 232 20 chr15 58938121 58938272 -42442249 + L3 LINE CR1 1392 1574 -3 2343 116 16 35 chr15 58938305 58938676 -42441845 + THE1B LTR MaLR 1 364 0 2248 191 27 0 chr15 58939341 58939787 -42440734 - MLT2C2 LTR ERVL -4 460 3 2111 166 11 3 chr15 58939936 58940298 -42440223 - MLT1A1 LTR MaLR 0 365 1 183 382 49 16 chr15 58940453 58940576 -42439945 + L3 LINE CR1 38 164 -1413 197 264 245 0 chr15 58940783 58940889 -42439632 - MIR SINE MIR -111 151 20 1576 197 18 18 chr15 58940904 58941244 -42439277 + MER58B DNA MER1_type 1 340 -1 839 304 50 11 chr15 58941480 58941763 -42438758 + L3 LINE CR1 431 724 -853 557 352 67 6 chr15 58941763 58942078 -42438443 + L3 LINE CR1 891 1224 -353 952 255 50 0 chr15 58942092 58942390 -42438131 - LTR16C LTR ERVL 0 491 179 2146 126 3 0 chr15 58943889 58944183 -42436338 + AluJb SINE Alu 2 296 -16 1846 131 38 6 chr15 58944184 58944504 -42436017 - MLT1A1 LTR MaLR -35 330 1 1017 226 45 11 chr15 58944504 58944791 -42435730 + L1ME2 LINE L1 5819 6115 -49 2425 67 0 0 chr15 58944808 58945105 -42435416 + AluY SINE Alu 1 297 -14 189 213 0 0 chr15 58945536 58945583 -42434938 + CT-rich Low_complexity Low_complexity 2 48 0 318 243 12 110 chr15 58946326 58946499 -42434022 + MER5A DNA MER1_type 5 160 -29 221 244 53 94 chr15 58946506 58946678 -42433843 + MIR SINE MIR 41 205 -57 * 878 190 147 9 chr15 58946602 58946813 -42433708 - MIR SINE MIR 0 262 23 315 216 72 0 chr15 58947825 58947936 -42432585 + L2 LINE L2 2839 2957 -357 346 243 0 0 chr15 58947945 58948019 -42432502 - MER81 DNA DNA -40 74 1 408 226 134 63 chr15 58948026 58948265 -42432256 + L2 LINE L2 2959 3214 -99 323 323 10 0 chr15 58948366 58948465 -42432056 + L1ME2 LINE L1 3689 3788 -2358 1283 176 88 0 chr15 58948499 58948771 -42431750 - MER46B DNA MER2_type -60 176 6 267 158 53 0 chr15 58948838 58948895 -42431626 + L1MB2 LINE L1 5820 5879 -287 819 237 29 64 chr15 58948905 58949251 -42431270 + L1ME1 LINE L1 5826 6159 -7 30 27 0 0 chr15 58949784 58949821 -42430700 + AT_rich Low_complexity Low_complexity 1 37 0 28 29 0 0 chr15 58949841 58949876 -42430645 + AT_rich Low_complexity Low_complexity 1 35 0 8248 122 5 29 chr15 58951814 58952485 -42428036 + HSMAR2 DNA Mariner 1 626 -676 2408 103 0 0 chr15 58952485 58952797 -42427724 + AluSx SINE Alu 1 312 0 8248 122 5 29 chr15 58952797 58953458 -42427063 + HSMAR2 DNA Mariner 626 1301 -1 2461 73 0 10 chr15 58954162 58954476 -42426045 + AluY SINE Alu 1 311 0 730 131 15 8 chr15 58955584 58955714 -42424807 + L1MB2 LINE L1 6038 6168 -3 21 0 0 0 chr15 58955714 58955735 -42424786 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr15 58956003 58956024 -42424497 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr15 58956143 58956179 -42424342 + AT_rich Low_complexity Low_complexity 1 36 0 27 81 0 0 chr15 58957600 58957662 -42422859 + AT_rich Low_complexity Low_complexity 1 62 0 2210 116 3 0 chr15 58957840 58958141 -42422380 - AluSx SINE Alu -10 302 1 390 154 0 0 chr15 58958656 58958734 -42421787 + (CA)n Simple_repeat Simple_repeat 1 78 0 562 286 123 53 chr15 58958759 58959157 -42421364 + L1MEd LINE L1 988 1413 -4959 307 287 76 13 chr15 58959181 58959525 -42420996 + L1MEd LINE L1 1334 1903 -840 502 265 65 30 chr15 58959633 58959863 -42420658 + L1ME2 LINE L1 4527 4764 -1382 2048 144 16 33 chr15 58959863 58960231 -42420290 - THE1B LTR MaLR 0 364 3 2693 196 76 19 chr15 58960232 58960956 -42419565 + L1ME2 LINE L1 5397 6161 -3 1414 237 98 68 chr15 58960968 58961697 -42418824 + L1ME3A LINE L1 4423 5129 -1041 1811 147 13 32 chr15 58961697 58962009 -42418512 + AluSx SINE Alu 5 310 -2 1414 237 98 68 chr15 58962009 58962762 -42417759 + L1ME3A LINE L1 5129 5948 -222 262 304 110 21 chr15 58962817 58963008 -42417513 + L1ME3A LINE L1 5963 6170 0 2239 113 0 0 chr15 58963113 58963415 -42417106 + AluSx SINE Alu 1 302 -10 23 0 0 0 chr15 58964390 58964413 -42416108 + AT_rich Low_complexity Low_complexity 1 23 0 586 184 32 95 chr15 58965325 58965515 -42415006 + MER5B DNA MER1_type 1 178 0 280 308 11 0 chr15 58966129 58966220 -42414301 - MIR SINE MIR -62 200 109 212 164 0 109 chr15 58966369 58966424 -42414097 + L2 LINE L2 3265 3313 0 940 123 7 7 chr15 58967300 58967446 -42413075 - AluJb SINE Alu -30 282 137 215 353 92 29 chr15 58967935 58968142 -42412379 - L3b LINE CR1 -23 1560 1341 1983 110 20 7 chr15 58969705 58969997 -42410524 + AluSx SINE Alu 1 296 -16 384 333 48 0 chr15 58970217 58970343 -42410178 - MIR SINE MIR -33 229 98 24 32 0 0 chr15 58970839 58970870 -42409651 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr15 58971165 58971197 -42409324 + AT_rich Low_complexity Low_complexity 1 32 0 285 272 152 0 chr15 58971327 58971419 -42409102 + L2 LINE L2 3163 3268 -4 203 277 92 57 chr15 58972926 58973067 -42407454 + MIR3 SINE MIR 42 187 -21 303 338 44 49 chr15 58973160 58973364 -42407157 - HAL1 LINE L1 -1789 718 516 329 136 15 0 chr15 58974186 58974252 -42406269 + CT-rich Low_complexity Low_complexity 4 70 0 1485 164 109 0 chr15 58974307 58974581 -42405940 - AluJo SINE Alu -8 304 1 454 277 118 27 chr15 58974813 58975352 -42405169 - L1MC/D LINE L1 -774 5355 5147 292 299 61 24 chr15 58975363 58975527 -42404994 - L1MC/D LINE L1 -1070 5059 4890 638 146 58 22 chr15 58975554 58975691 -42404830 - L1MB5 LINE L1 -8 6166 6025 219 69 0 0 chr15 58975721 58975750 -42404771 + (T)n Simple_repeat Simple_repeat 1 29 0 947 112 35 0 chr15 58975757 58975900 -42404621 - L1PA10 LINE L1 -112 6056 5909 1575 194 41 0 chr15 58975904 58976223 -42404298 - L1MB5 LINE L1 -142 6032 5701 254 204 19 0 chr15 58976249 58976303 -42404218 + MIR SINE MIR 178 232 -30 663 283 52 31 chr15 58976351 58976772 -42403749 - L1MC/D LINE L1 -1299 4830 4401 2040 285 118 32 chr15 58976845 58977467 -42403054 - L1MEd LINE L1 -762 1728 1161 2486 75 0 3 chr15 58977467 58977774 -42402747 - AluSc SINE Alu -3 306 1 2040 285 118 32 chr15 58977774 58978644 -42401877 - L1MEd LINE L1 -1329 1161 16 829 290 126 34 chr15 58978922 58979478 -42401043 + MLT1L LTR MaLR 1 607 -8 336 245 77 84 chr15 58979966 58980121 -42400400 + MIR SINE MIR 59 212 -50 295 226 16 0 chr15 58980797 58980859 -42399662 - MIR3 SINE MIR -48 160 98 313 301 57 100 chr15 58981069 58981418 -42399103 + L3 LINE CR1 1041 1374 -203 221 275 193 28 chr15 58982806 58982915 -42397606 + MIR SINE MIR 16 142 -66 992 201 91 0 chr15 58982934 58983133 -42397388 - MER58A DNA MER1_type -1 223 7 1110 230 54 45 chr15 58983855 58983935 -42396586 - MER46C DNA MER2_type 0 338 260 2159 128 16 0 chr15 58983935 58984240 -42396281 + AluSg SINE Alu 1 310 0 1110 230 54 45 chr15 58984240 58984494 -42396027 - MER46C DNA MER2_type -78 260 1 285 289 41 21 chr15 58984954 58985051 -42395470 + MER5B DNA MER1_type 1 99 -79 745 282 27 48 chr15 58985294 58985588 -42394933 - LTR16B LTR ERVL -138 326 39 2144 97 3 41 chr15 58987111 58987430 -42393091 + AluSg SINE Alu 1 307 -3 183 234 36 108 chr15 58988878 58988989 -42391532 + MER5C DNA MER1_type 61 163 -161 23 0 0 0 chr15 58989103 58989126 -42391395 + AT_rich Low_complexity Low_complexity 1 23 0 324 70 0 0 chr15 58990024 58990067 -42390454 + (T)n Simple_repeat Simple_repeat 1 43 0 422 307 16 0 chr15 58991270 58991397 -42389124 - MER20B DNA MER1_type -620 163 35 501 17 0 0 chr15 58991675 58991733 -42388788 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 520 185 169 8 chr15 58991859 58991989 -42388532 + MLT1E1 LTR MaLR 1 151 -503 498 177 186 18 chr15 58992095 58992208 -42388313 + MLT1E1 LTR MaLR 304 435 -191 230 150 0 0 chr15 58992205 58992245 -42388276 + MLT1E1 LTR MaLR 585 624 0 * 276 272 88 9 chr15 58992249 58992363 -42388158 + L2 LINE L2 2628 2750 -564 1437 195 35 11 chr15 58992446 58992733 -42387788 + AluJo SINE Alu 1 294 -18 193 295 51 26 chr15 58992758 58992836 -42387685 + L2 LINE L2 2744 2823 -491 933 136 6 19 chr15 58993145 58993307 -42387214 - AluSx SINE Alu -152 160 1 822 256 33 0 chr15 58993334 58993549 -42386972 + MER58A DNA MER1_type 3 224 0 630 182 0 61 chr15 58993601 58993733 -42386788 + FLAM_A SINE Alu 4 127 -6 2122 148 0 0 chr15 58993861 58994172 -42386349 + AluSx SINE Alu 1 311 -1 270 63 32 63 chr15 58994196 58994259 -42386262 + (GGAAA)n Simple_repeat Simple_repeat 3 63 0 444 283 54 2 chr15 58995197 58995349 -42385172 + MIR3 SINE MIR 51 205 -3 657 191 0 33 chr15 58997573 58997756 -42382765 + (TATATG)n Simple_repeat Simple_repeat 1 177 0 238 133 0 0 chr15 58997760 58997805 -42382716 + L1MC4 LINE L1 6659 6703 -1339 267 189 0 0 chr15 58997805 58997858 -42382663 + (TATG)n Simple_repeat Simple_repeat 1 53 0 365 240 125 31 chr15 59001093 59001189 -42379332 + L2 LINE L2 3207 3311 -2 1690 91 0 0 chr15 59001220 59001440 -42379081 - AluSg/x SINE Alu 0 312 93 212 300 36 91 chr15 59001501 59001611 -42378910 + L2 LINE L2 3187 3290 -23 836 130 15 0 chr15 59001913 59002044 -42378477 + MER5A DNA MER1_type 57 189 0 4298 164 36 57 chr15 59002159 59003793 -42376728 - L1MB7 LINE L1 -8 6176 4581 404 339 26 0 chr15 59004400 59004515 -42376006 + MIR3 SINE MIR 51 168 -40 6607 122 6 13 chr15 59005541 59006596 -42373925 + L1MA5 LINE L1 5254 6300 0 27 29 0 0 chr15 59006747 59006781 -42373740 + AT_rich Low_complexity Low_complexity 1 34 0 32 26 0 0 chr15 59007071 59007110 -42373411 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr15 59007696 59007717 -42372804 + AT_rich Low_complexity Low_complexity 1 21 0 188 190 0 103 chr15 59008270 59008328 -42372193 - MIR SINE MIR 0 262 211 317 315 27 9 chr15 59008337 59008448 -42372073 + MIR SINE MIR 31 143 -119 820 169 0 0 chr15 59008455 59008579 -42371942 + FLAM_C SINE Alu 1 124 -19 302 314 91 34 chr15 59009680 59009976 -42370545 - L1ME4a LINE L1 -224 5897 5585 24 91 0 0 chr15 59010601 59010667 -42369854 + AT_rich Low_complexity Low_complexity 1 66 0 1647 160 38 51 chr15 59015328 59015641 -42364880 - AluJb SINE Alu -3 309 1 38 22 0 0 chr15 59016156 59016201 -42364320 + AT_rich Low_complexity Low_complexity 1 45 0 32 26 0 0 chr15 59016226 59016265 -42364256 + AT_rich Low_complexity Low_complexity 1 39 0 9147 195 57 41 chr15 59016793 59019014 -42361507 - Cheshire DNA MER1_type -1 2419 1 1492 229 80 7 chr15 59019165 59019628 -42360893 + L1MC2 LINE L1 3929 4425 -1721 372 240 70 3 chr15 59019657 59019786 -42360735 + L1MC2 LINE L1 4883 5016 -1130 1301 165 0 9 chr15 59019786 59020004 -42360517 + AluJb SINE Alu 76 291 -21 5596 177 27 19 chr15 59020030 59021330 -42359191 + L1MC2 LINE L1 5009 6320 -24 645 60 86 0 chr15 59071377 59071643 -42308878 + (TA)n Simple_repeat Simple_repeat 1 289 0 35 63 0 0 chr15 59071643 59071706 -42308815 + AT_rich Low_complexity Low_complexity 1 63 0 200 278 113 87 chr15 59071784 59071899 -42308622 + L2 LINE L2 3155 3272 0 3822 164 34 28 chr15 59072324 59072480 -42308041 + L1PB4 LINE L1 5007 5161 -995 1694 183 7 0 chr15 59072480 59072764 -42307757 + AluJb SINE Alu 1 286 -26 3822 164 34 28 chr15 59072764 59073571 -42306950 + L1PB4 LINE L1 5161 5959 -197 7450 85 16 2 chr15 59073641 59074678 -42305843 + L1MA3 LINE L1 5254 6305 0 753 234 5 21 chr15 59074693 59074885 -42305636 + L1PB4 LINE L1 5966 6154 -2 31 0 0 0 chr15 59074887 59074918 -42305603 + AT_rich Low_complexity Low_complexity 1 31 0 2218 92 3 7 chr15 59075706 59076001 -42304520 + AluSq SINE Alu 1 294 -19 207 133 0 44 chr15 59076115 59076160 -42304361 + (CAAAT)n Simple_repeat Simple_repeat 2 44 0 38 30 0 30 chr15 59076929 59076948 -42303573 + AT_rich Low_complexity Low_complexity 1 19 -46 1120 56 0 0 chr15 59076948 59077092 -42303429 + L1PA5 LINE L1 6004 6147 -7 38 30 0 30 chr15 59077092 59077139 -42303382 + AT_rich Low_complexity Low_complexity 19 65 0 218 234 161 44 chr15 59077336 59077473 -42303048 - MIR SINE MIR 0 262 110 1971 125 3 7 chr15 59077493 59077790 -42302731 + AluSx SINE Alu 1 296 -16 22679 36 4 9 chr15 59078469 59082003 -42298518 - L1PA5 LINE L1 -42 6112 2587 309 109 0 0 chr15 59082101 59082147 -42298374 + (TA)n Simple_repeat Simple_repeat 1 46 0 23 33 0 0 chr15 59082192 59082222 -42298299 + AT_rich Low_complexity Low_complexity 1 30 0 1808 145 31 42 chr15 59083083 59083442 -42297079 + L1PB4 LINE L1 5788 6142 -14 1023 149 98 0 chr15 59084106 59084300 -42296221 - L1MA7 LINE L1 -436 5855 5643 871 148 0 7 chr15 59084300 59084442 -42296079 - Tigger7 DNA MER2_type 0 2487 2347 751 155 8 0 chr15 59084442 59084571 -42295950 - L1MA7 LINE L1 -654 5637 5508 23 33 0 0 chr15 59085511 59085541 -42294980 + AT_rich Low_complexity Low_complexity 1 30 0 296 339 64 46 chr15 59086667 59087134 -42293387 + L2 LINE L2 2594 3062 -210 5923 162 104 21 chr15 59087914 59089207 -42291314 - Charlie1a DNA MER1_type -1 1454 54 276 324 81 18 chr15 59090235 59090346 -42290175 + L2 LINE L2 3154 3271 -1 878 263 95 0 chr15 59091223 59091455 -42289066 + MIR SINE MIR 6 259 -3 1133 224 150 59 chr15 59091878 59092437 -42288084 + HAL1 LINE L1 1490 2099 -408 801 121 0 0 chr15 59092438 59092554 -42287967 + MSTB LTR MaLR 1 116 -310 1199 139 27 5 chr15 59092555 59092742 -42287779 + MSTB LTR MaLR 236 426 0 418 277 153 29 chr15 59092759 59093106 -42287415 + HAL1 LINE L1 2112 2501 -6 262 297 18 18 chr15 59095886 59095997 -42284524 + GA-rich Low_complexity Low_complexity 3 113 0 315 320 58 13 chr15 59096082 59096238 -42284283 + L1ME LINE L1 5558 5720 -401 23 33 0 0 chr15 59097404 59097434 -42283087 + AT_rich Low_complexity Low_complexity 1 30 0 246 309 62 31 chr15 59097447 59097609 -42282912 - MIR SINE MIR -72 190 24 488 45 97 0 chr15 59099329 59099463 -42281058 + (TA)n Simple_repeat Simple_repeat 2 148 0 202 270 0 0 chr15 59100450 59100487 -42280034 - L2 LINE L2 -15 3298 3262 542 56 14 0 chr15 59100548 59100619 -42279902 + MADE1 DNA Mariner 9 80 0 216 216 0 0 chr15 59101043 59101094 -42279427 + GA-rich Low_complexity Low_complexity 1 51 0 28 0 0 0 chr15 59102363 59102391 -42278130 + AT_rich Low_complexity Low_complexity 1 28 0 1999 103 6 48 chr15 59102444 59102756 -42277765 + AluSg SINE Alu 1 299 -11 240 214 0 0 chr15 59103352 59103408 -42277113 + T-rich Low_complexity Low_complexity 1 56 0 10732 23 2 0 chr15 59103409 59105438 -42275083 - L1PA4 LINE L1 -3 6152 4119 1735 153 0 38 chr15 59105813 59106127 -42274394 + AluSx SINE Alu 1 302 -10 318 276 55 61 chr15 59106632 59106795 -42273726 - MIR SINE MIR -50 212 51 586 339 6 12 chr15 59107211 59107379 -42273142 - MIR3 SINE MIR -21 187 21 2338 73 13 7 chr15 59107695 59107998 -42272523 + AluY SINE Alu 1 305 -6 331 312 87 23 chr15 59108894 59109067 -42271454 - MIR3 SINE MIR -9 199 16 2103 55 14 4 chr15 59109773 59110048 -42270473 + L1PA8 LINE L1 5894 6171 -1 276 250 105 0 chr15 59110236 59110312 -42270209 - MIR SINE MIR -114 148 65 2122 78 0 49 chr15 59110535 59110841 -42269680 - AluY SINE Alu -20 291 1 831 210 95 5 chr15 59111165 59111365 -42269156 - MER20 DNA MER1_type -1 218 1 7709 53 12 5 chr15 59111451 59112450 -42268071 + LTR13 LTR ERVK 2 1007 0 180 214 24 0 chr15 59113180 59113222 -42267299 - MIR3 SINE MIR -36 172 130 21 57 0 0 chr15 59113385 59113420 -42267101 + AT_rich Low_complexity Low_complexity 1 35 0 245 143 122 0 chr15 59113420 59113469 -42267052 - MIR SINE MIR -73 135 81 1031 201 20 0 chr15 59113809 59114008 -42266513 - MER2 DNA MER2_type -142 203 1 960 187 0 0 chr15 59114071 59114242 -42266279 + FRAM SINE Alu 1 171 -5 948 153 92 76 chr15 59114286 59114600 -42265921 - MER33 DNA MER1_type 0 324 6 854 142 0 0 chr15 59116231 59116396 -42264125 - FRAM SINE Alu 0 176 12 283 308 50 44 chr15 59117224 59117406 -42263115 + L2 LINE L2 2575 2757 -557 387 198 45 81 chr15 59117861 59117972 -42262549 - MIR SINE MIR -76 186 80 607 231 46 40 chr15 59118760 59118933 -42261588 - MIR3 SINE MIR -15 193 20 334 218 136 9 chr15 59119561 59119671 -42260850 - MIR SINE MIR -48 214 91 1872 165 10 0 chr15 59119899 59120196 -42260325 + AluJb SINE Alu 1 300 -12 1830 167 0 7 chr15 59120271 59120564 -42259957 + AluJb SINE Alu 1 291 -21 1677 6 0 0 chr15 59120797 59120980 -42259541 - L1HS LINE L1 -276 5879 5697 1630 39 0 0 chr15 59120976 59121179 -42259342 + L1P LINE L1 5024 5226 -920 * 359 213 0 0 chr15 59121715 59121795 -42258726 + MIR SINE MIR 151 230 -32 243 284 15 0 chr15 59121964 59122031 -42258490 + L2 LINE L2 1853 1920 -1394 298 323 53 23 chr15 59122597 59122730 -42257791 + MIR3 SINE MIR 10 146 -62 376 230 42 67 chr15 59122807 59122972 -42257549 + MER103 DNA DNA 3 163 -3 333 0 0 0 chr15 59124202 59124239 -42256282 + (TG)n Simple_repeat Simple_repeat 2 38 0 303 218 11 46 chr15 59124771 59124858 -42255663 + L2 LINE L2 3188 3271 -1 432 294 128 5 chr15 59124908 59125112 -42255409 - MIR SINE MIR -30 232 4 391 257 97 14 chr15 59125246 59125390 -42255131 + MIR SINE MIR 70 225 -37 582 193 44 15 chr15 59125764 59125899 -42254622 - L1ME3 LINE L1 0 6162 6024 224 289 62 31 chr15 59126061 59126158 -42254363 - MIR SINE MIR -46 216 117 364 257 163 94 chr15 59127254 59127881 -42252640 + L1M2 LINE L1 757 1426 -5423 243 239 0 45 chr15 59128373 59128440 -42252081 - MIR3 SINE MIR -8 200 137 339 184 175 19 chr15 59128514 59128617 -42251904 - MIR SINE MIR -72 136 18 1769 136 11 4 chr15 59128678 59128957 -42251564 + AluJb SINE Alu 1 281 -31 180 0 0 0 chr15 59128960 59128980 -42251541 + (TAA)n Simple_repeat Simple_repeat 2 21 0 309 240 380 0 chr15 59128983 59129104 -42251417 - MIR SINE MIR -54 208 42 21 36 0 0 chr15 59129587 59129615 -42250906 + AT_rich Low_complexity Low_complexity 1 28 0 820 233 6 0 chr15 59129671 59129851 -42250670 - FRAM SINE Alu -4 172 1 309 267 75 86 chr15 59130603 59130657 -42249864 - MIR3 SINE MIR -1 207 154 2181 90 7 7 chr15 59130657 59130968 -42249553 + AluSg SINE Alu 2 312 0 309 267 75 86 chr15 59130968 59131099 -42249422 - MIR3 SINE MIR -54 154 23 731 219 52 30 chr15 59132085 59132318 -42248203 - L1ME3 LINE L1 -172 5992 5755 * 1079 198 53 22 chr15 59132311 59132531 -42247990 - L1MCb LINE L1 -4036 2528 2293 1456 108 85 0 chr15 59132531 59132743 -42247778 - MER30 DNA MER1_type 0 230 1 1079 198 53 22 chr15 59132743 59132841 -42247680 - L1MCb LINE L1 -4271 2293 2200 * 4276 219 100 21 chr15 59132839 59134227 -42246294 - L1MCb LINE L1 -4851 1194 4 1494 201 4 11 chr15 59134297 59134576 -42245945 - L1ME3 LINE L1 -395 5769 5493 605 155 0 19 chr15 59134607 59134710 -42245811 + Tigger5 DNA MER2_type 1 101 -2222 2165 107 7 13 chr15 59134893 59135201 -42245320 + AluSg SINE Alu 1 306 -4 603 282 40 19 chr15 59135586 59135818 -42244703 + MIR SINE MIR 23 256 -6 2261 88 0 0 chr15 59136052 59136367 -42244154 - AluSx SINE Alu 0 315 1 281 306 179 22 chr15 59137221 59137240 -42243281 - MIR3 SINE MIR -38 170 155 2124 118 3 16 chr15 59137240 59137545 -42242976 - AluSc SINE Alu -8 301 1 281 306 179 22 chr15 59137545 59137659 -42242862 - MIR3 SINE MIR -53 155 16 26 64 0 0 chr15 59137836 59137883 -42242638 + AT_rich Low_complexity Low_complexity 1 47 0 2212 129 0 3 chr15 59137996 59138348 -42242173 - AluSx SINE Alu 0 351 1 221 233 0 50 chr15 59139129 59139189 -42241332 - L2 LINE L2 -13 3300 3244 405 290 152 0 chr15 59139204 59139342 -42241179 + MIR3 SINE MIR 2 160 -48 355 298 64 35 chr15 59139347 59139518 -42241003 + MER117 DNA MER1_type 6 181 -16 191 347 0 28 chr15 59139732 59139804 -42240717 - L2 LINE L2 -208 3064 2995 26 0 0 0 chr15 59139844 59139870 -42240651 + AT_rich Low_complexity Low_complexity 1 26 0 312 272 95 45 chr15 59139983 59140128 -42240393 - MIR SINE MIR -62 146 45 582 133 80 66 chr15 59140599 59140750 -42239771 - LTR33A LTR ERVL -9 514 362 264 308 156 57 chr15 59140789 59140897 -42239624 - L2 LINE L2 -40 3273 3177 2142 125 7 0 chr15 59140897 59141194 -42239327 + AluSq SINE Alu 1 299 -14 264 308 156 57 chr15 59141194 59141400 -42239121 - L2 LINE L2 -136 3177 2928 213 220 0 0 chr15 59142148 59142198 -42238323 + (CAT)n Simple_repeat Simple_repeat 3 52 0 7885 90 4 16 chr15 59143450 59144520 -42236001 - MER11C LTR ERVK -14 1057 1 826 208 12 18 chr15 59144619 59144787 -42235734 - FAM SINE Alu -4 171 5 1573 281 23 24 chr15 59144920 59145595 -42234926 - L2 LINE L2 -114 3199 2536 473 315 22 22 chr15 59146336 59146514 -42234007 + MER117 DNA MER1_type 4 181 -16 476 201 238 6 chr15 59146796 59146960 -42233561 - MIR SINE MIR -13 249 48 685 286 17 34 chr15 59147749 59147987 -42232534 + MIR SINE MIR 29 262 0 378 0 0 0 chr15 59148127 59148169 -42232352 + (TC)n Simple_repeat Simple_repeat 1 42 0 244 287 30 10 chr15 59148286 59148387 -42232134 - MLT1K LTR MaLR -320 268 166 24 32 0 0 chr15 59148690 59148721 -42231800 + AT_rich Low_complexity Low_complexity 1 31 0 2532 132 42 5 chr15 59149480 59149888 -42230633 + MSTA LTR MaLR 6 428 0 1132 220 111 10 chr15 59149888 59150278 -42230243 - L1MD2 LINE L1 -77 6089 5669 353 274 0 24 chr15 59150276 59150400 -42230121 + L1ME3A LINE L1 6043 6163 -7 * 2098 118 0 7 chr15 59150651 59150940 -42229581 - AluSx SINE Alu -20 292 6 595 233 16 8 chr15 59152421 59152550 -42227971 + LTR67 LTR ERVL 428 557 0 276 282 24 117 chr15 59153372 59153578 -42226943 + MER91B DNA MER1_type 1 187 -3 1569 242 93 22 chr15 59154037 59154500 -42226021 + MER20B DNA MER1_type 1 496 -287 1984 115 17 0 chr15 59154631 59154919 -42225602 + AluSx SINE Alu 1 293 -19 2466 79 0 3 chr15 59155444 59155749 -42224772 - AluY SINE Alu -7 304 1 21 0 0 0 chr15 59155755 59155776 -42224745 + AT_rich Low_complexity Low_complexity 1 21 0 694 238 32 0 chr15 59155798 59155983 -42224538 + MER20B DNA MER1_type 509 699 -84 2265 93 3 0 chr15 59155983 59156272 -42224249 - AluSc SINE Alu -17 292 3 712 256 107 0 chr15 59156797 59157031 -42223490 - LTR33A LTR ERVL 0 523 265 773 161 0 44 chr15 59157329 59157466 -42223055 - FLAM_A SINE Alu -2 131 1 294 274 95 37 chr15 59158226 59158416 -42222105 + MER112 DNA MER1_type 1 201 -59 8043 34 0 0 chr15 59159102 59160700 -42219821 + L1PA4 LINE L1 4557 6155 0 229 333 0 26 chr15 59160854 59160932 -42219589 - MIR SINE MIR -150 112 37 479 345 80 26 chr15 59161663 59161927 -42218594 - MLT1K LTR MaLR -284 304 27 254 184 122 0 chr15 59162121 59162170 -42218351 + MER69 DNA AcHobo 2 56 -2470 * 1929 171 56 63 chr15 59162158 59162258 -42218263 + MER69 DNA AcHobo 2051 2150 -376 2101 109 25 0 chr15 59162258 59162541 -42217980 + AluSp SINE Alu 1 290 -23 1929 171 56 63 chr15 59162541 59162919 -42217602 + MER69 DNA AcHobo 2150 2526 0 313 299 92 24 chr15 59162977 59163141 -42217380 - MLT1K LTR MaLR -240 348 174 510 219 29 0 chr15 59163308 59163413 -42217108 + MER96B DNA MER1_type? 3 110 -307 445 218 0 78 chr15 59164261 59164403 -42216118 + MIR3 SINE MIR 70 200 -8 696 204 22 61 chr15 59164636 59164867 -42215654 - LTR16B LTR ERVL 0 464 243 1612 200 6 9 chr15 59164878 59165198 -42215323 - MLT1B LTR MaLR 0 390 72 7231 125 10 34 chr15 59165199 59166153 -42214368 + Tigger1 DNA MER2_type 1 987 -1431 2094 134 0 7 chr15 59166153 59166459 -42214062 + AluSx SINE Alu 9 312 0 7231 125 10 34 chr15 59166459 59167030 -42213491 + Tigger1 DNA MER2_type 987 1570 -848 347 353 30 0 chr15 59167603 59167736 -42212785 + MIR SINE MIR 47 183 -79 742 159 0 0 chr15 59168421 59168547 -42211974 + L1MA7 LINE L1 6166 6291 0 257 279 23 0 chr15 59168753 59168839 -42211682 + (TA)n Simple_repeat Simple_repeat 2 89 0 360 296 104 8 chr15 59169341 59169466 -42211055 - MIR3 SINE MIR -49 159 23 2092 133 0 9 chr15 59170765 59171080 -42209441 - AluJo SINE Alu 0 312 1 375 310 93 8 chr15 59172345 59172498 -42208023 - MIR SINE MIR -77 131 8 1338 296 122 86 chr15 59173373 59173580 -42206941 - L3 LINE CR1 -24 1553 1355 1810 162 0 23 chr15 59173580 59173889 -42206632 - AluJb SINE Alu -9 303 2 1338 296 122 86 chr15 59173889 59174814 -42205707 - L3 LINE CR1 -222 1355 369 2186 53 8 0 chr15 59174814 59175078 -42205443 + AluSp SINE Alu 3 268 -45 1338 296 122 86 chr15 59175078 59175200 -42205321 - L3 LINE CR1 -1208 369 253 2406 86 0 3 chr15 59175617 59175919 -42204602 - AluSq SINE Alu -12 301 1 2399 87 3 0 chr15 59176016 59176315 -42204206 - AluSq SINE Alu -13 300 1 2203 83 55 0 chr15 59176432 59176721 -42203800 - AluSp SINE Alu -8 305 1 1849 144 4 0 chr15 59176910 59177181 -42203340 + MER7A DNA MER2_type 1 270 -76 303 88 35 105 chr15 59177198 59177255 -42203266 + Tigger3(Golem) DNA MER2_type 2873 2925 -104 377 315 117 11 chr15 59178406 59178592 -42201929 - MIR SINE MIR -25 237 32 905 152 37 12 chr15 59179237 59179401 -42201120 - L1MB7 LINE L1 -19 6165 5998 489 305 63 23 chr15 59179958 59180132 -42200389 + L2 LINE L2 3131 3311 -2 2868 133 65 15 chr15 59180576 59181056 -42199465 - MER41B LTR ERV1 0 635 132 293 275 22 33 chr15 59182763 59182854 -42197667 + L2 LINE L2 3224 3313 0 324 264 168 48 chr15 59183104 59183222 -42197299 + MIR3 SINE MIR 13 158 -50 570 312 26 5 chr15 59183222 59183411 -42197110 + MER117 DNA MER1_type 2 194 -3 324 264 168 48 chr15 59183411 59183459 -42197062 + MIR3 SINE MIR 158 199 -9 779 296 24 8 chr15 59183523 59183770 -42196751 - MIR SINE MIR -4 258 8 2295 133 54 20 chr15 59185847 59186199 -42194322 - THE1B LTR MaLR 0 364 1 352 293 25 50 chr15 59186255 59186453 -42194068 - L1M4 LINE L1 -1337 4809 4617 269 272 114 27 chr15 59186521 59186922 -42193599 + L1M4 LINE L1 4914 5342 -812 1603 206 57 64 chr15 59186981 59187102 -42193419 - MER110A LTR ERV1 0 468 348 2448 88 0 0 chr15 59187102 59187407 -42193114 + AluY SINE Alu 1 305 -6 1603 206 57 64 chr15 59187407 59187756 -42192765 - MER110A LTR ERV1 -120 348 1 432 271 94 70 chr15 59187816 59188291 -42192230 + L1MCc LINE L1 5 833 -5589 2310 243 120 17 chr15 59188522 59189846 -42190675 + L1MCc LINE L1 978 2164 -4777 2324 110 0 0 chr15 59189846 59190154 -42190367 + AluSx SINE Alu 1 308 -4 2310 243 120 17 chr15 59190154 59190949 -42189572 + L1MCc LINE L1 2164 3458 -3483 454 316 86 55 chr15 59190965 59191620 -42188901 + ERVL LTR ERVL 1121 1795 -3969 1722 202 50 0 chr15 59191625 59191942 -42188579 - MER58B DNA MER1_type 0 341 9 387 0 0 0 chr15 59192691 59192734 -42187787 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 7685 55 0 1 chr15 59192740 59194149 -42186372 - L1PA8 LINE L1 -13 6159 4753 474 284 26 20 chr15 59194405 59194589 -42185932 + MIR SINE MIR 23 203 -59 273 167 0 0 chr15 59194615 59194663 -42185858 - L1PA16 LINE L1 0 6166 6119 299 282 113 9 chr15 59195486 59195603 -42184918 - MIR SINE MIR -62 146 40 182 231 0 0 chr15 59197626 59197665 -42182856 + MIR SINE MIR 40 78 -184 360 43 0 0 chr15 59197881 59197927 -42182594 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 1200 96 28 11 chr15 59198310 59198487 -42182034 + LTR54 LTR ERV1 1 180 -330 2378 88 0 0 chr15 59198654 59198949 -42181572 - AluSx SINE Alu -17 295 1 271 299 8 55 chr15 59199098 59199121 -42181400 + MIR SINE MIR 53 76 -186 1962 191 99 64 chr15 59199121 59199607 -42180914 - MLT1D LTR MaLR -2 503 1 271 299 8 55 chr15 59199607 59199710 -42180811 + MIR SINE MIR 76 173 -89 264 277 31 15 chr15 59199781 59199846 -42180675 - L2 LINE L2 0 3313 3248 904 196 0 0 chr15 59200745 59200908 -42179613 + FRAM SINE Alu 1 163 -13 3277 121 40 28 chr15 59201021 59201304 -42179217 - MER34B LTR ERV1 -12 553 258 2445 136 12 50 chr15 59201304 59201723 -42178798 - MER57A LTR ERV1 0 403 1 3277 121 40 28 chr15 59201723 59201985 -42178536 - MER34B LTR ERV1 -307 258 1 2982 29 0 0 chr15 59202660 59203006 -42177515 - L1PA2 LINE L1 -1442 4704 4359 8289 14 4 2 chr15 59203006 59204465 -42176056 + L1PA2 LINE L1 4718 6179 0 1930 147 0 0 chr15 59204619 59204934 -42175587 - AluSx SINE Alu 0 315 1 328 226 85 9 chr15 59205155 59205261 -42175260 - MIR SINE MIR -55 207 94 375 23 0 0 chr15 59207464 59207508 -42173013 + (TG)n Simple_repeat Simple_repeat 1 44 0 456 264 9 9 chr15 59208134 59208244 -42172277 - L2 LINE L2 -15 3298 3189 509 321 20 25 chr15 59208689 59208885 -42171636 - MIR SINE MIR -34 228 34 740 233 85 27 chr15 59210550 59210773 -42169748 + MIR SINE MIR 17 252 -10 478 294 95 35 chr15 59211893 59212124 -42168397 - MIR SINE MIR -6 256 12 387 236 102 64 chr15 59213601 59213758 -42166763 + MIR SINE MIR 33 195 -67 582 307 82 43 chr15 59214094 59214351 -42166170 - L2 LINE L2 -14 3258 2992 368 215 39 54 chr15 59214903 59215033 -42165488 + L1MC4 LINE L1 7911 8038 -4 247 244 0 0 chr15 59215817 59215862 -42164659 + polypyrimidine Low_complexity Low_complexity 1 45 0 389 188 38 0 chr15 59215866 59215946 -42164575 - LTR16A LTR ERVL -44 406 324 551 226 47 55 chr15 59216082 59216266 -42164255 - L1MC5 LINE L1 -201 7760 7577 324 0 0 0 chr15 59216266 59216302 -42164219 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 551 226 47 55 chr15 59216302 59216374 -42164147 - L1MC5 LINE L1 -384 7577 7506 741 131 25 0 chr15 59216375 59216497 -42164024 - L1MA5A LINE L1 0 6297 6173 230 219 62 0 chr15 59216611 59216675 -42163846 + MLT1L LTR MaLR 166 233 -382 4915 184 90 98 chr15 59216830 59218528 -42161993 + L1MA6 LINE L1 2967 4678 -3041 1008 245 84 20 chr15 59218528 59218885 -42161636 + MSTC LTR MaLR 1 428 0 4915 184 90 98 chr15 59218885 59221268 -42159253 + L1MA6 LINE L1 4678 7332 -387 263 61 0 0 chr15 59221271 59221304 -42159217 - L1M2a LINE L1 -7135 33 1 183 152 0 0 chr15 59221325 59221371 -42159150 + (TA)n Simple_repeat Simple_repeat 1 46 0 192 308 19 0 chr15 59221510 59221562 -42158959 - L3 LINE CR1 -250 1327 1275 265 301 122 16 chr15 59221670 59221793 -42158728 + MIR3 SINE MIR 36 171 -37 441 219 136 19 chr15 59222186 59222341 -42158180 - MIR SINE MIR -78 184 12 21 0 0 0 chr15 59223484 59223505 -42157016 + GC_rich Low_complexity Low_complexity 1 21 0 548 207 12 12 chr15 59223773 59223937 -42156584 + CT-rich Low_complexity Low_complexity 1 164 0 1539 158 28 49 chr15 59223937 59224222 -42156299 - AluJo SINE Alu -33 279 1 223 208 21 0 chr15 59224735 59224783 -42155738 + GA-rich Low_complexity Low_complexity 2 50 0 694 229 139 96 chr15 59225691 59226080 -42154441 + MER110 LTR ERV1 83 466 -9 1351 107 0 14 chr15 59226302 59226517 -42154004 - pTR5 LTR ERV1 -2046 392 181 300 277 18 18 chr15 59226519 59226631 -42153890 - LTR30 LTR ERV1 -67 655 544 3035 140 124 20 chr15 59226635 59227254 -42153267 - pTR5 LTR ERV1 -417 2021 1146 231 36 0 0 chr15 59227604 59227632 -42152889 + (TA)n Simple_repeat Simple_repeat 2 29 0 2065 155 5 29 chr15 59229280 59229666 -42150855 + L1MA4 LINE L1 4628 5004 -1142 3805 138 17 5 chr15 59229666 59230261 -42150260 + L1MA5A LINE L1 5689 6291 -6 538 136 12 0 chr15 59230317 59230398 -42150123 - FLAM SINE Alu -20 123 42 6119 130 27 37 chr15 59230460 59230791 -42149730 + L1MA4 LINE L1 4993 5326 -974 1653 170 18 11 chr15 59230791 59231074 -42149447 + AluJo SINE Alu 6 290 -22 6119 130 27 37 chr15 59231074 59232040 -42148481 + L1MA4 LINE L1 5326 6293 -7 200 149 0 95 chr15 59232918 59232992 -42147529 + (TTTTTG)n Simple_repeat Simple_repeat 5 71 0 9794 68 13 40 chr15 59233002 59233915 -42146606 - HERVK14 LTR ERVK -637 5308 4441 2294 81 3 3 chr15 59233915 59234210 -42146311 - AluY SINE Alu -16 295 1 9794 68 13 40 chr15 59234210 59234664 -42145857 - HERVK14 LTR ERVK -1504 4441 3977 11798 84 7 7 chr15 59234668 59236034 -42144487 - HERVK14 LTR ERVK -4392 1553 184 2266 88 0 3 chr15 59236034 59236359 -42144162 + AluY SINE Alu 1 324 0 11798 84 7 7 chr15 59236359 59236544 -42143977 - HERVK14 LTR ERVK -5760 185 1 2181 65 5 174 chr15 59236545 59236958 -42143563 - LTR14A LTR ERVK -1 343 1 2954 121 37 118 chr15 59237002 59237731 -42142790 + MER4B-int LTR ERV1 5282 5951 -807 1505 138 6 117 chr15 59237740 59238073 -42142448 - AluJb SINE Alu -16 296 1 979 245 35 19 chr15 59238075 59238336 -42142185 + MER4B-int LTR ERV1 6053 6317 -441 2767 123 40 15 chr15 59238336 59238791 -42141730 + MER50 LTR ERV1 1 466 -268 266 95 24 0 chr15 59238918 59238960 -42141561 - MSTC LTR MaLR -385 43 1 1249 57 23 34 chr15 59239250 59239427 -42141094 - L1PA6 LINE L1 -2 6152 5978 21 57 0 0 chr15 59239679 59239714 -42140807 + AT_rich Low_complexity Low_complexity 1 35 0 296 191 0 16 chr15 59240283 59240346 -42140175 + MIR SINE MIR 112 173 -89 207 304 0 18 chr15 59240365 59240421 -42140100 - MIR SINE MIR -151 111 57 25 31 0 0 chr15 59240650 59240682 -42139839 + AT_rich Low_complexity Low_complexity 1 32 0 1081 161 44 1 chr15 59241525 59241776 -42138745 - MER33 DNA MER1_type -77 247 1 306 314 102 0 chr15 59242142 59242279 -42138242 - L1ME4a LINE L1 -217 5904 5754 778 298 78 19 chr15 59242597 59242916 -42137605 + LTR16A LTR ERVL 113 450 0 1911 246 30 13 chr15 59243772 59244231 -42136290 + MLT1C LTR MaLR 1 467 0 278 362 43 35 chr15 59244565 59244706 -42135815 - MIR3 SINE MIR -27 181 40 234 272 81 44 chr15 59245172 59245308 -42135213 - MIR SINE MIR -24 238 98 2108 126 3 22 chr15 59245308 59245626 -42134895 + AluSq SINE Alu 1 312 -1 264 300 156 0 chr15 59245649 59245739 -42134782 - MIR SINE MIR -87 121 18 294 336 45 0 chr15 59246079 59246189 -42134332 - L3 LINE CR1 -72 1505 1391 239 228 69 118 chr15 59246189 59246259 -42134262 + L1ME3 LINE L1 4981 5053 -1093 2495 145 6 3 chr15 59246259 59246624 -42133897 - MER47A DNA MER2_type 0 366 1 239 228 69 118 chr15 59246624 59246799 -42133722 + L1ME3 LINE L1 5053 5214 -932 781 156 15 7 chr15 59246807 59246942 -42133579 - MLT1B LTR MaLR -254 136 1 1192 153 0 0 chr15 59246975 59247152 -42133369 + AluJb SINE Alu 1 177 -135 1380 135 154 18 chr15 59247153 59247435 -42133086 - MLT1A1 LTR MaLR -42 348 2 447 300 202 15 chr15 59247440 59247767 -42132754 + L1ME3 LINE L1 5485 5866 -296 325 244 166 83 chr15 59248403 59248632 -42131889 + MIR SINE MIR 13 260 -2 227 287 22 110 chr15 59248779 59248915 -42131606 + MIR SINE MIR 18 141 -121 1226 185 4 2 chr15 59249350 59249628 -42130893 + MER2 DNA MER2_type 6 330 -15 183 204 0 0 chr15 59249842 59249891 -42130630 + GA-rich Low_complexity Low_complexity 4 52 0 187 253 93 13 chr15 59249967 59250042 -42130479 + MIR SINE MIR 115 195 -67 349 241 0 46 chr15 59250111 59250198 -42130323 - L2 LINE L2 -8 3264 3182 263 244 65 73 chr15 59250597 59250720 -42129801 + MIR SINE MIR 26 147 -61 277 83 0 0 chr15 59250905 59250941 -42129580 - U2 snRNA snRNA -152 36 1 1022 161 31 51 chr15 59251219 59251474 -42129047 - pTR5 LTR ERV1 -1446 992 743 207 273 136 38 chr15 59253242 59253374 -42127147 + MIR SINE MIR 8 152 -110 245 352 50 57 chr15 59253484 59253643 -42126878 + L2 LINE L2 2936 3093 -179 379 262 148 46 chr15 59253664 59253901 -42126620 + MIR SINE MIR 2 262 0 226 286 43 0 chr15 59254137 59254207 -42126314 + MER45C DNA AcHobo 2 74 -879 * 1486 283 60 9 chr15 59254205 59254651 -42125870 + MER45C DNA AcHobo 445 913 -40 482 311 99 71 chr15 59254824 59255423 -42125098 + L2 LINE L2 2655 3264 -8 1831 177 0 7 chr15 59255840 59256134 -42124387 - AluJb SINE Alu -20 292 1 26 0 0 0 chr15 59256310 59256336 -42124185 + AT_rich Low_complexity Low_complexity 1 26 0 274 325 71 0 chr15 59256852 59257006 -42123515 - L1ME3A LINE L1 -230 5940 5776 180 0 0 0 chr15 59258774 59258794 -42121727 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 336 265 105 37 chr15 59259092 59259254 -42121267 + MIR SINE MIR 78 250 -12 2486 43 0 0 chr15 59259808 59260090 -42120431 + AluY SINE Alu 20 301 -10 2367 97 3 0 chr15 59260488 59260796 -42119725 - AluSg SINE Alu -1 309 1 344 50 0 0 chr15 59260903 59260943 -42119578 - U2 snRNA snRNA -148 40 1 298 252 117 27 chr15 59261200 59261422 -42119099 + L1ME4a LINE L1 5874 6115 -6 2100 137 0 9 chr15 59262220 59262535 -42117986 - AluSx SINE Alu 0 312 1 189 180 80 20 chr15 59262881 59262931 -42117590 + MIR SINE MIR 19 71 -137 233 211 39 96 chr15 59262962 59263066 -42117455 - MIR SINE MIR -54 208 111 201 278 0 0 chr15 59263068 59263122 -42117399 + MIR SINE MIR 203 256 -6 456 144 0 29 chr15 59263508 59263605 -42116916 - MER58 DNA MER1_type -3 2417 250 368 174 42 138 chr15 59263659 59263826 -42116695 + MER58C DNA MER1_type 64 214 -1 2871 167 30 56 chr15 59263917 59264189 -42116332 + L1PB4 LINE L1 3885 4163 -1993 2871 148 19 56 chr15 59264189 59264323 -42116198 + L1PB4 LINE L1 5652 5789 -367 2138 126 3 3 chr15 59264323 59264632 -42115889 + AluSg SINE Alu 1 309 -1 2871 148 19 56 chr15 59264632 59265018 -42115503 + L1PB4 LINE L1 5789 6153 -3 2871 167 30 56 chr15 59265018 59265942 -42114579 + L1PB4 LINE L1 4163 5110 -1046 2253 109 0 10 chr15 59265942 59266253 -42114268 + AluSq SINE Alu 4 311 -2 2871 167 30 56 chr15 59266253 59266675 -42113846 + L1PB4 LINE L1 5110 6153 -3 217 349 32 0 chr15 59267300 59267363 -42113158 - MIR SINE MIR -67 141 77 235 266 16 16 chr15 59267603 59267667 -42112854 - Charlie4 DNA MER1_type -4 1957 1894 4128 131 17 15 chr15 59267789 59267925 -42112596 - L1PA16 LINE L1 -5 6161 6027 2346 81 14 0 chr15 59267925 59268220 -42112301 - AluSq SINE Alu -14 299 1 4128 131 17 15 chr15 59268220 59268732 -42111789 - L1PA16 LINE L1 -139 6027 5512 1274 121 30 0 chr15 59268889 59269088 -42111433 - L1PA16 LINE L1 -649 5507 5303 497 113 0 0 chr15 59269089 59269160 -42111361 - AluSx SINE Alu -11 300 230 1108 137 6 55 chr15 59269161 59269344 -42111177 - AluSx SINE Alu -138 174 1 4446 201 63 25 chr15 59269345 59270433 -42110088 - L1 LINE L1 -835 5311 4182 1234 251 49 18 chr15 59270414 59270804 -42109717 - L1 LINE L1 -3370 2776 2375 * 1229 250 27 24 chr15 59270807 59271103 -42109418 + MER4B-int LTR ERV1 1985 2281 -4050 740 186 17 0 chr15 59271132 59271250 -42109271 - FLAM_C SINE Alu -19 124 5 343 119 0 127 chr15 59271252 59271329 -42109192 + MER4B-int LTR ERV1 2673 2726 -3220 396 164 0 15 chr15 59271380 59271447 -42109074 + MER34C LTR ERV1 160 225 -360 460 169 32 169 chr15 59271513 59271702 -42108819 + MER4B-int LTR ERV1 1190 1352 -3771 * 790 228 38 42 chr15 59271700 59271989 -42108532 + pTR5 LTR ERV1 741 1028 -1410 3829 150 27 65 chr15 59272070 59272783 -42107738 + LTR12 LTR ERV1 3 688 0 779 163 71 59 chr15 59272783 59272826 -42107695 + MER4B-int LTR ERV1 1993 2034 -4724 1936 150 3 10 chr15 59272826 59273126 -42107395 - AluSp SINE Alu -15 298 1 779 163 71 59 chr15 59273126 59273351 -42107170 + MER4B-int LTR ERV1 2034 2874 -3884 515 292 118 6 chr15 59273351 59273512 -42107009 + LTR28 LTR ERV1 1 179 -841 407 182 131 30 chr15 59273540 59273774 -42106747 + LTR27 LTR ERV1 283 486 -15 2025 206 63 22 chr15 59274050 59274541 -42105980 - MER9 LTR ERVK 0 511 1 414 146 55 55 chr15 59274549 59274659 -42105862 + LTR49-int LTR ERV1 3480 3589 -2742 2260 178 39 7 chr15 59274668 59275083 -42105438 + MSTA LTR MaLR 1 428 0 838 130 41 0 chr15 59275083 59275229 -42105292 + MSTA-int LTR MaLR 1 152 -1499 252 54 0 0 chr15 59275227 59275264 -42105257 + L1PB3 LINE L1 6112 6148 -6 * 3022 128 8 29 chr15 59275276 59275734 -42104787 + LTR49-int LTR ERV1 4227 4674 -2084 3276 93 9 13 chr15 59275734 59276185 -42104336 + LTR2 LTR ERV1 1 449 0 3022 128 8 29 chr15 59276185 59276248 -42104273 + LTR49-int LTR ERV1 4674 4737 -2021 551 75 99 205 chr15 59276251 59276462 -42104059 - LTR14A LTR ERVK -209 399 1 955 320 6 6 chr15 59276468 59276796 -42103725 - HERVKC4 LTR ERVK -7 5255 4928 5090 66 25 0 chr15 59276957 59277597 -42102924 + SVA Other Other 730 1385 -1 23 33 0 0 chr15 59277597 59277627 -42102894 + AT_rich Low_complexity Low_complexity 1 30 0 4143 102 20 37 chr15 59277627 59278282 -42102239 + HSMAR1 DNA Mariner 644 1287 0 189 0 0 0 chr15 59279070 59279091 -42101430 + (TA)n Simple_repeat Simple_repeat 2 22 0 1672 91 0 9 chr15 59281759 59281978 -42098543 + AluSq SINE Alu 83 299 -14 219 36 0 0 chr15 59282319 59282347 -42098174 + (CCCTG)n Simple_repeat Simple_repeat 4 31 0 1857 101 105 22 chr15 59283294 59283604 -42096917 - AluSx SINE Alu 0 312 1 249 344 48 8 chr15 59284115 59284240 -42096281 + MIR3 SINE MIR 6 135 -73 374 299 42 65 chr15 59285508 59285722 -42094799 + L1MDa LINE L1 2367 2575 -3965 21 36 0 0 chr15 59285742 59285770 -42094751 + AT_rich Low_complexity Low_complexity 1 28 0 1244 192 90 30 chr15 59286012 59286278 -42094243 + AluJo SINE Alu 1 282 -30 423 52 0 0 chr15 59286280 59286338 -42094183 + (TC)n Simple_repeat Simple_repeat 1 58 0 189 0 0 0 chr15 59286338 59286359 -42094162 + (TA)n Simple_repeat Simple_repeat 2 22 0 2510 161 26 2 chr15 59286836 59287252 -42093269 - MSTB LTR MaLR 0 426 1 189 195 0 0 chr15 59287663 59287704 -42092817 + (CATA)n Simple_repeat Simple_repeat 4 44 0 213 335 111 55 chr15 59288146 59288471 -42092050 - L2 LINE L2 -95 3177 2835 750 225 59 34 chr15 59289269 59289505 -42091016 + MIR SINE MIR 21 262 0 231 236 73 0 chr15 59290145 59290200 -42090321 + L2 LINE L2 3214 3272 0 189 0 0 0 chr15 59291016 59291037 -42089484 + (CAA)n Simple_repeat Simple_repeat 1 21 0 516 98 206 0 chr15 59291667 59291759 -42088762 - MER68 LTR ERV1 -451 111 1 584 151 0 0 chr15 59292133 59292226 -42088295 + AluJ/FLAM SINE Alu 2 94 -218 775 179 0 0 chr15 59292227 59292344 -42088177 + AluJo/FRAM SINE Alu 172 288 -24 4549 99 27 13 chr15 59292832 59293151 -42087370 + L1PA13 LINE L1 5459 5772 -391 189 107 0 0 chr15 59293151 59293179 -42087342 + (TA)n Simple_repeat Simple_repeat 1 28 0 4549 99 27 13 chr15 59293179 59293553 -42086968 + L1PA13 LINE L1 5772 6162 -1 5194 182 30 51 chr15 59294891 59294997 -42085524 + L1M4 LINE L1 3801 3908 -2238 2167 150 0 0 chr15 59294997 59295303 -42085218 - AluSx SINE Alu -6 306 1 5194 182 30 51 chr15 59295303 59296534 -42083987 + L1M4 LINE L1 3908 5110 -1036 32 0 0 0 chr15 59300340 59300372 -42080149 + AT_rich Low_complexity Low_complexity 1 32 0 180 77 0 0 chr15 59301163 59301189 -42079332 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 1070 134 139 15 chr15 59302270 59302471 -42078050 - 7SLRNA srpRNA srpRNA 0 320 95 379 310 217 5 chr15 59303178 59303381 -42077140 - MIR SINE MIR -6 256 11 195 260 40 0 chr15 59304795 59304845 -42075676 - MIR SINE MIR -62 146 95 2055 139 10 3 chr15 59305732 59306035 -42074486 + AluJb SINE Alu 1 305 -7 268 285 79 17 chr15 59306146 59306273 -42074248 - MER5A DNA MER1_type -32 146 20 225 284 252 0 chr15 59306574 59306701 -42073820 - MIR3 SINE MIR -1 207 49 619 250 157 20 chr15 59307082 59307286 -42073235 - MIR SINE MIR -10 252 21 2435 99 71 0 chr15 59307291 59307643 -42072878 + MER51B LTR ERV1 1 377 0 389 292 50 17 chr15 59309211 59309331 -42071190 - L2 LINE L2 -3 3310 3187 448 317 71 27 chr15 59309337 59309520 -42071001 - MIR3 SINE MIR -9 199 9 181 242 136 15 chr15 59310756 59310822 -42069699 - L3 LINE CR1 -97 1480 1407 195 250 0 0 chr15 59311887 59311931 -42068590 - MIR SINE MIR -58 150 107 196 224 103 17 chr15 59314454 59314512 -42066009 - L3 LINE CR1 -778 799 737 495 161 0 0 chr15 59314536 59314617 -42065904 + MER51A LTR ERV1 1 81 -553 28 0 0 0 chr15 59314742 59314770 -42065751 + AT_rich Low_complexity Low_complexity 1 28 0 1869 178 10 0 chr15 59314777 59315080 -42065441 + AluSx SINE Alu 1 306 -6 248 271 122 19 chr15 59315207 59315314 -42065207 - MER5A DNA MER1_type -48 141 24 186 250 0 0 chr15 59315668 59315708 -42064813 - L3b LINE CR1 -5 1578 1539 598 231 170 19 chr15 59316266 59316466 -42064055 - MIR SINE MIR -18 244 18 266 220 0 0 chr15 59316619 59316669 -42063852 + PABL_B LTR ERV1 1 50 -617 684 231 39 19 chr15 59317115 59317323 -42063198 + PABL_B LTR ERV1 456 667 0 225 187 13 67 chr15 59317339 59317360 -42063161 - L1MC4a LINE L1 -1853 5955 5934 365 0 22 0 chr15 59317360 59317405 -42063116 + (CA)n Simple_repeat Simple_repeat 2 47 0 225 187 13 67 chr15 59317405 59317458 -42063063 - L1MC4a LINE L1 -1874 5934 5885 196 200 109 18 chr15 59318678 59318733 -42061788 - L3 LINE CR1 -781 796 737 3257 148 55 17 chr15 59318757 59319352 -42061169 + MER51A LTR ERV1 1 618 -16 283 252 79 102 chr15 59319440 59319567 -42060954 - L2 LINE L2 -3 3310 3187 383 318 119 0 chr15 59319573 59319724 -42060797 - MIR3 SINE MIR -9 199 31 1741 166 43 122 chr15 59320271 59320928 -42059593 - LTR10E LTR ERV1 0 566 1 854 105 0 0 chr15 59321837 59321942 -42058579 - AluJb SINE Alu -207 105 1 2482 75 0 0 chr15 59322758 59323065 -42057456 + AluY SINE Alu 1 307 -4 1768 134 17 14 chr15 59323153 59323443 -42057078 + AluSx SINE Alu 1 291 -21 2202 125 0 0 chr15 59324567 59324862 -42055659 + AluSx SINE Alu 1 295 -17 456 260 39 39 chr15 59325604 59325758 -42054763 - MIR3 SINE MIR -50 158 5 374 234 64 35 chr15 59325944 59326085 -42054436 - MIR SINE MIR -70 192 48 4121 122 5 44 chr15 59327435 59328068 -42052453 - LTR14B LTR ERVK 0 608 1 214 189 0 0 chr15 59328870 59328907 -42051614 + (TATATG)n Simple_repeat Simple_repeat 4 40 0 932 168 7 7 chr15 59329619 59329774 -42050747 + MER5A DNA MER1_type 2 156 -33 1405 185 66 4 chr15 59330511 59330770 -42049751 + AluJo SINE Alu 1 275 -37 2272 93 3 7 chr15 59330859 59331159 -42049362 + AluSp SINE Alu 1 299 -14 2051 109 49 0 chr15 59331172 59331456 -42049065 + AluSx SINE Alu 1 298 -14 319 229 132 11 chr15 59331657 59331886 -42048635 + L1P5 LINE L1 5283 5555 -599 * 441 250 0 17 chr15 59331865 59331981 -42048540 + L1ME LINE L1 5532 5645 -476 971 234 77 29 chr15 59332787 59333140 -42047381 - L1MC4a LINE L1 -475 5827 5694 634 190 9 17 chr15 59333668 59333784 -42046737 - FLAM_C SINE Alu -18 115 1 331 287 25 33 chr15 59334279 59334401 -42046120 + L2 LINE L2 2927 3047 -225 366 333 63 0 chr15 59334467 59334578 -42045943 - L2 LINE L2 -33 3239 3122 349 266 94 31 chr15 59335630 59335758 -42044763 + L2 LINE L2 3137 3272 0 1039 255 10 0 chr15 59335823 59336031 -42044490 - MER82 DNA MER2_type 0 653 444 316 343 55 28 chr15 59336063 59336244 -42044277 + MIR SINE MIR 2 187 -75 476 232 0 11 chr15 59336279 59336374 -42044147 - MER82 DNA MER2_type -559 94 1 749 176 0 32 chr15 59336968 59336979 -42043542 - FLAM_A SINE Alu -181 121 111 183 80 0 0 chr15 59336979 59337004 -42043517 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 749 176 0 32 chr15 59337004 59337117 -42043404 - FLAM_A SINE Alu -191 111 1 2938 65 8 3 chr15 59339657 59340009 -42040512 - THE1A LTR MaLR -1 354 1 2591 41 0 0 chr15 59340577 59340872 -42039649 + AluY SINE Alu 1 295 -16 1051 85 0 0 chr15 59340970 59341100 -42039421 - AluSq/x SINE Alu -183 130 1 1717 234 108 50 chr15 59341282 59342022 -42038499 - L1MC4a LINE L1 -1691 6100 5313 2219 112 0 3 chr15 59342022 59342326 -42038195 - AluSc SINE Alu -6 303 1 1717 234 108 50 chr15 59342326 59342345 -42038176 - L1MC4a LINE L1 -2478 5313 5297 387 309 134 29 chr15 59342787 59343205 -42037316 - L1MC4a LINE L1 -2982 3147 2686 1003 268 103 40 chr15 59343245 59344022 -42036499 - L1M4 LINE L1 -3192 2954 2129 539 281 63 110 chr15 59344076 59344291 -42036230 - L1MC4a LINE L1 -4969 1150 926 1453 149 3 138 chr15 59344291 59344640 -42035881 - AluJo SINE Alu -10 302 1 539 281 63 110 chr15 59344640 59345043 -42035478 - L1MC4a LINE L1 -5193 926 561 1778 184 0 3 chr15 59347108 59347413 -42033108 + AluJb SINE Alu 6 309 -3 230 161 0 36 chr15 59348212 59348268 -42032253 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 1128 105 0 0 chr15 59348457 59348610 -42031911 + AluSp/q SINE Alu 159 311 -2 607 301 67 53 chr15 59348791 59349150 -42031371 - L3 LINE CR1 -177 1400 1037 7763 95 18 3 chr15 59349692 59350812 -42029709 - L1P LINE L1 -2936 3210 2074 * 11090 70 22 0 chr15 59350810 59352280 -42028241 + L1P LINE L1 3865 5367 -779 1193 71 0 0 chr15 59352282 59352423 -42028098 - AluSg SINE Alu -169 141 1 1668 189 126 36 chr15 59353051 59353495 -42027026 - LTR2B LTR ERV1 0 490 7 2020 119 65 3 chr15 59353770 59354064 -42026457 - AluSx SINE Alu 0 312 1 2584 68 126 8 chr15 59354323 59354719 -42025802 + LTR7 LTR ERV1 1 443 -7 1607 185 7 14 chr15 59355670 59355967 -42024554 - AluJo SINE Alu -17 295 1 540 118 0 0 chr15 59356091 59356180 -42024341 - AluSg/x SINE Alu 0 302 214 813 141 21 120 chr15 59356434 59356505 -42024016 + MER5A DNA MER1_type 16 92 -97 1641 134 130 0 chr15 59356505 59356781 -42023740 + AluSx SINE Alu 1 312 0 813 141 21 120 chr15 59356781 59356901 -42023620 + MER5A DNA MER1_type 92 188 -1 644 240 91 66 chr15 59357727 59357969 -42022552 + MIR SINE MIR 5 252 -10 306 295 82 0 chr15 59358053 59358175 -42022346 - MER112 DNA MER1_type -121 139 8 1059 58 7 0 chr15 59358196 59358333 -42022188 + L1PA13 LINE L1 6026 6163 0 1067 146 23 6 chr15 59358338 59358509 -42022012 + AluJo SINE Alu 118 291 -21 402 217 94 14 chr15 59359507 59359645 -42020876 - MER53 DNA DNA -40 149 1 256 188 42 0 chr15 59359653 59359701 -42020820 - MIR SINE MIR -156 106 57 289 213 13 40 chr15 59360507 59360582 -42019939 - MIR SINE MIR -85 177 105 21 0 0 0 chr15 59360620 59360641 -42019880 + AT_rich Low_complexity Low_complexity 1 21 0 2268 131 16 22 chr15 59361799 59362166 -42018355 - L1MB2 LINE L1 -228 5943 5579 1804 192 43 3 chr15 59362161 59362510 -42018011 - L1MB8 LINE L1 -346 5832 5470 * 352 234 54 71 chr15 59362612 59362721 -42017800 + L1MC4 LINE L1 7492 7598 -444 2211 114 7 0 chr15 59362721 59363028 -42017493 + AluSg SINE Alu 1 309 -1 352 234 54 71 chr15 59363028 59363102 -42017419 + L1MC4 LINE L1 7598 7672 -370 288 286 31 0 chr15 59363140 59363245 -42017276 + L1MC4 LINE L1 7807 8005 -37 2274 92 0 0 chr15 59363747 59364031 -42016490 + AluSx SINE Alu 1 284 -28 297 75 0 0 chr15 59364098 59364138 -42016383 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 1126 281 131 60 chr15 59365444 59366245 -42014276 - L3 LINE CR1 -57 1520 663 291 248 162 51 chr15 59366198 59366315 -42014206 - L2 LINE L2 -1 3271 3142 * 188 222 22 0 chr15 59366442 59366487 -42014034 - L3 LINE CR1 -1102 475 430 2227 65 65 7 chr15 59366518 59366810 -42013711 + AluY SINE Alu 2 310 -1 815 248 85 104 chr15 59366842 59367729 -42012792 + L1MD3 LINE L1 6180 6968 -840 14561 141 24 12 chr15 59367735 59371299 -42009222 + L1MA1 LINE L1 2697 6302 0 541 273 92 20 chr15 59371318 59371567 -42008954 + L1MC4 LINE L1 7120 7386 -656 3135 221 37 21 chr15 59371567 59372225 -42008296 + L1ME1 LINE L1 5429 6075 -91 2021 105 24 24 chr15 59372225 59372358 -42008163 + AluSq SINE Alu 6 138 -175 1726 118 76 8 chr15 59372358 59372621 -42007900 + AluSx SINE Alu 1 281 -31 402 167 0 0 chr15 59372561 59372621 -42007900 + AluS SINE Alu 220 310 0 240 0 32 0 chr15 59372621 59372652 -42007869 + (CAAA)n Simple_repeat Simple_repeat 1 72 0 1059 107 44 0 chr15 59372652 59372811 -42007710 + AluSq SINE Alu 134 299 -14 3135 221 37 21 chr15 59372811 59372873 -42007648 + L1ME1 LINE L1 6075 6161 -5 1438 244 80 65 chr15 59372862 59373539 -42006982 + L1MC4 LINE L1 7355 8041 -1 * 593 290 98 35 chr15 59373833 59374351 -42006170 + L1M4 LINE L1 2475 3025 -3121 304 221 120 25 chr15 59374764 59374922 -42005599 + L1ME3A LINE L1 5779 5951 -219 489 61 0 192 chr15 59375235 59375334 -42005187 - MADE1 DNA Mariner 0 80 1 2106 102 0 14 chr15 59375393 59375688 -42004833 + AluSg SINE Alu 3 293 -17 356 184 18 94 chr15 59376039 59376162 -42004359 + L1MC4 LINE L1 6526 6703 -1139 2251 75 10 0 chr15 59376787 59376911 -42003610 + AluY SINE Alu 1 122 -189 297 0 0 0 chr15 59376911 59376944 -42003577 + (CA)n Simple_repeat Simple_repeat 2 34 0 2251 75 10 0 chr15 59376944 59377113 -42003408 + AluY SINE Alu 122 297 -14 754 250 103 38 chr15 59377182 59377474 -42003047 - LTR16A1 LTR ERVL 0 457 147 189 191 64 21 chr15 59378483 59378530 -42001991 - L3 LINE CR1 -258 1319 1271 329 70 333 0 chr15 59378743 59378800 -42001721 + MADE1 DNA Mariner 5 80 0 2232 76 10 13 chr15 59378951 59379084 -42001437 + AluSg SINE Alu 1 133 -177 2166 103 0 3 chr15 59379084 59379386 -42001135 + AluSg SINE Alu 1 301 -9 2232 76 10 13 chr15 59379386 59379553 -42000968 + AluSg SINE Alu 133 300 -10 1974 122 17 0 chr15 59379566 59379853 -42000668 + AluSx SINE Alu 3 294 -18 457 242 37 19 chr15 59380238 59380399 -42000122 + MER103 DNA DNA 1 164 -2 1427 152 0 109 chr15 59380486 59380816 -41999705 - AluJb SINE Alu -18 294 1 441 265 99 6 chr15 59381136 59381298 -41999223 - LTR33A LTR ERVL -39 484 308 226 305 35 57 chr15 59381468 59381609 -41998912 - LTR33A LTR ERVL -367 156 19 2072 117 3 0 chr15 59381692 59381999 -41998522 - AluSx SINE Alu -4 308 1 866 200 115 11 chr15 59382666 59382926 -41997595 - MER5C DNA MER1_type 0 324 38 246 238 25 12 chr15 59382964 59383044 -41997477 + MER103 DNA DNA 38 118 -48 235 214 29 0 chr15 59383285 59383355 -41997166 + GA-rich Low_complexity Low_complexity 2 73 0 340 264 138 13 chr15 59383972 59384160 -41996361 + MIR3 SINE MIR 33 237 -25 525 200 19 0 chr15 59384573 59384678 -41995843 + MER5A DNA MER1_type 6 112 -77 268 371 29 29 chr15 59385157 59385297 -41995224 + MIR SINE MIR 31 170 -92 1731 164 7 0 chr15 59385994 59386287 -41994234 - AluSx SINE Alu -17 295 1 2125 88 14 0 chr15 59386492 59386802 -41993719 - AluSp SINE Alu 0 314 1 204 296 0 0 chr15 59386938 59386982 -41993539 - MER91B DNA MER1_type -133 57 14 2291 92 0 0 chr15 59387044 59387347 -41993174 - AluSx SINE Alu -9 303 1 2054 95 3 3 chr15 59388506 59388790 -41991731 + AluSc SINE Alu 14 297 -12 2259 110 0 0 chr15 59388907 59389217 -41991304 + AluSg SINE Alu 1 310 0 9340 25 0 221 chr15 59389440 59391217 -41989304 - SVA Other Other -1 1385 1 215 0 0 62 chr15 59391219 59391251 -41989270 + (AGGGGG)n Simple_repeat Simple_repeat 6 35 0 12646 126 15 4 chr15 59391651 59393538 -41986983 - L1M1 LINE L1 -4502 3063 1155 372 257 86 18 chr15 59393538 59393724 -41986797 + LTR33A LTR ERVL 301 469 -54 769 189 0 0 chr15 59393730 59393862 -41986659 + AluJo/FLAM SINE Alu 2 133 -169 1357 106 0 0 chr15 59393865 59394044 -41986477 + AluSg SINE Alu 1 179 -131 226 133 0 0 chr15 59394054 59394084 -41986437 + Alu SINE Alu 146 175 -127 1110 88 0 0 chr15 59394107 59394255 -41986266 + AluSc SINE Alu 144 291 -18 938 103 0 139 chr15 59394255 59394449 -41986072 + AluSg/x SINE Alu 134 300 -12 247 343 51 26 chr15 59394484 59394601 -41985920 - MIR SINE MIR -93 115 5 261 0 0 0 chr15 59395290 59395319 -41985202 + (CA)n Simple_repeat Simple_repeat 1 29 0 1576 167 30 4 chr15 59395522 59395792 -41984729 + AluJo SINE Alu 15 291 -21 260 292 50 17 chr15 59395816 59395936 -41984585 - L1ME4a LINE L1 -57 6064 5941 1705 183 85 25 chr15 59396411 59396777 -41983744 - MSTD LTR MaLR 0 396 9 392 254 27 27 chr15 59396761 59396871 -41983650 - LTR33 LTR ERVL -28 493 384 * 2068 87 42 3 chr15 59397145 59397433 -41983088 - AluSx SINE Alu -13 299 1 323 223 87 48 chr15 59398586 59398689 -41981832 + L1MC4 LINE L1 6595 6701 -1341 1520 225 63 33 chr15 59398690 59398866 -41981655 - L1MC4 LINE L1 -124 7918 7749 1998 109 3 0 chr15 59398866 59399150 -41981371 + AluSg SINE Alu 1 285 -25 560 62 12 0 chr15 59399151 59399232 -41981289 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 1520 225 63 33 chr15 59399232 59399511 -41981010 - L1MC4 LINE L1 -292 7750 7447 2426 67 0 0 chr15 59400184 59400484 -41980037 + AluY SINE Alu 1 300 -11 1883 170 3 0 chr15 59400492 59400803 -41979718 + AluJo SINE Alu 1 312 0 244 232 81 50 chr15 59401183 59401282 -41979239 - LTR33A LTR ERVL -362 161 60 183 156 0 0 chr15 59401881 59401913 -41978608 + A-rich Low_complexity Low_complexity 2 33 0 285 209 0 0 chr15 59402903 59402970 -41977551 + (CA)n Simple_repeat Simple_repeat 1 67 0 203 218 88 82 chr15 59403102 59403249 -41977272 - L2 LINE L2 -452 2862 2715 207 0 0 0 chr15 59403357 59403380 -41977141 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2261 92 0 3 chr15 59403385 59403691 -41976830 + AluSg SINE Alu 3 307 -3 1151 228 23 99 chr15 59403970 59404404 -41976117 - MLT1J LTR MaLR -2 509 109 1472 171 113 16 chr15 59404676 59404934 -41975587 - MER58B DNA MER1_type -2081 339 45 2066 123 3 28 chr15 59404934 59405251 -41975270 + AluSx SINE Alu 3 311 -1 1472 171 113 16 chr15 59405251 59405301 -41975220 - MER58B DNA MER1_type -2375 45 1 525 211 79 0 chr15 59405397 59405511 -41975010 - MIR SINE MIR -77 185 63 745 264 129 0 chr15 59405661 59405862 -41974659 + MIR SINE MIR 8 234 -28 359 229 19 48 chr15 59406336 59406441 -41974080 - MER5A DNA MER1_type -15 174 73 251 211 42 28 chr15 59406441 59406457 -41974064 - Charlie1 DNA MER1_type -396 2365 2351 1937 172 47 5 chr15 59406457 59406840 -41973681 - L1MD2 LINE L1 -1 6358 5960 251 211 42 28 chr15 59406840 59406894 -41973627 - Charlie1 DNA MER1_type -410 2351 2294 1515 180 7 30 chr15 59406919 59407214 -41973307 - AluJo SINE Alu -24 288 1 1789 189 43 18 chr15 59407238 59407634 -41972887 - L1MA9 LINE L1 -247 6065 5660 297 238 0 0 chr15 59407634 59407697 -41972824 + MER5A DNA MER1_type 124 186 -3 2311 75 0 16 chr15 59407703 59408011 -41972510 + AluY SINE Alu 1 303 -8 2203 95 0 0 chr15 59408975 59409269 -41971252 + AluSx SINE Alu 1 294 -18 2123 117 27 0 chr15 59409887 59410187 -41970334 + AluSx SINE Alu 1 308 -4 595 258 121 17 chr15 59410352 59410666 -41969855 + L1MC/D LINE L1 5372 5725 -468 569 314 37 5 chr15 59410668 59410755 -41969766 + MIR SINE MIR 58 141 -121 288 53 0 0 chr15 59410755 59410793 -41969728 + (CA)n Simple_repeat Simple_repeat 1 38 0 569 314 37 5 chr15 59410793 59410896 -41969625 + MIR SINE MIR 141 254 -8 2049 95 51 0 chr15 59411975 59412269 -41968252 - AluSq SINE Alu -4 309 1 238 319 106 9 chr15 59412365 59412478 -41968043 + MIR SINE MIR 17 140 -68 252 259 127 62 chr15 59413158 59413302 -41967219 + MIR3 SINE MIR 15 183 -41 323 167 71 36 chr15 59413509 59413593 -41966928 - MIR3 SINE MIR -10 198 112 216 0 0 0 chr15 59413676 59413700 -41966821 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1666 145 29 7 chr15 59413703 59413979 -41966542 - AluSx SINE Alu -30 282 1 234 270 14 14 chr15 59414396 59414470 -41966051 + (CATATA)n Simple_repeat Simple_repeat 3 76 0 415 200 64 32 chr15 59414755 59414880 -41965641 - MIR SINE MIR -7 255 127 2228 115 0 0 chr15 59415105 59415410 -41965111 + AluSq SINE Alu 1 305 -8 370 294 115 20 chr15 59415837 59416089 -41964432 + L1MC4a LINE L1 5667 5942 -1866 370 295 131 68 chr15 59416316 59416682 -41963839 + L2 LINE L2 2921 3309 -4 42 20 0 0 chr15 59416741 59416790 -41963731 + AT_rich Low_complexity Low_complexity 1 49 0 1736 152 51 0 chr15 59416820 59417116 -41963405 - AluSx SINE Alu -1 311 1 853 201 0 12 chr15 59417122 59417286 -41963235 - AluJo SINE Alu -4 298 137 524 335 99 11 chr15 59417289 59417561 -41962960 - L3 LINE CR1 -110 1467 1172 271 280 194 40 chr15 59417663 59417838 -41962683 - L3 LINE CR1 -426 1151 950 1017 164 11 0 chr15 59418916 59419093 -41961428 - AluJo SINE Alu -14 298 120 820 165 8 0 chr15 59420369 59420502 -41960019 - AluJo SINE Alu -175 137 4 2223 65 3 36 chr15 59421197 59421503 -41959018 - AluSc SINE Alu -7 302 7 1388 160 0 4 chr15 59421662 59421899 -41958622 - AluJo SINE Alu -12 300 65 957 180 0 12 chr15 59422022 59422183 -41958338 + FRAM SINE Alu 1 159 -7 1942 136 10 7 chr15 59422587 59422897 -41957624 + AluSx SINE Alu 1 311 -1 935 247 121 50 chr15 59423056 59423176 -41957345 - LTR33A LTR ERVL 0 523 413 1936 154 80 3 chr15 59423176 59423514 -41957007 + THE1B LTR MaLR 1 364 0 935 247 121 50 chr15 59423514 59423757 -41956764 - LTR33A LTR ERVL -110 413 134 991 242 0 45 chr15 59423777 59424041 -41956480 + L1PBa LINE L1 1102 1353 -5510 329 311 46 20 chr15 59424045 59424196 -41956325 - LTR33 LTR ERVL -365 156 2 310 262 48 12 chr15 59424272 59424356 -41956165 - MIR SINE MIR -104 158 72 1675 194 89 48 chr15 59425015 59425168 -41955353 + L1MB8 LINE L1 5716 5861 -317 2297 91 0 0 chr15 59425168 59425454 -41955067 + AluSc SINE Alu 19 304 -5 1675 194 89 48 chr15 59425454 59425737 -41954784 + L1MB8 LINE L1 5861 6170 -8 1838 166 0 7 chr15 59425738 59426034 -41954487 - AluJb SINE Alu -18 294 1 31 26 0 0 chr15 59426034 59426072 -41954449 + AT_rich Low_complexity Low_complexity 1 38 0 433 363 6 6 chr15 59426421 59426592 -41953929 + L2 LINE L2 3099 3269 -3 1674 166 0 72 chr15 59426592 59426936 -41953585 - AluJb SINE Alu 0 312 1 186 253 213 13 chr15 59427103 59427178 -41953343 - MIR SINE MIR -89 119 30 1230 137 73 6 chr15 59427216 59427473 -41953048 - Tigger5 DNA MER2_type -1 2322 77 225 235 0 20 chr15 59427506 59427557 -41952964 + Tigger5 DNA MER2_type 1 50 -2273 * 320 269 0 0 chr15 59427552 59427619 -41952902 - Tigger5 DNA MER2_type -2256 67 1 470 151 0 0 chr15 59427829 59427902 -41952619 - AluJ/FLAM SINE Alu -224 88 16 * 552 165 0 0 chr15 59427899 59427996 -41952525 + AluSg/x SINE Alu 210 306 -6 1837 126 19 0 chr15 59428477 59428590 -41951931 + AluSx SINE Alu 16 125 -190 245 50 0 25 chr15 59428590 59428630 -41951891 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 1837 126 19 0 chr15 59428630 59428811 -41951710 + AluSx SINE Alu 125 315 0 3174 138 70 6 chr15 59429058 59429572 -41950949 - MER21A LTR ERV1 -9 922 376 1107 138 98 5 chr15 59429574 59429773 -41950748 - MER21A LTR ERV1 -663 268 51 3190 62 5 0 chr15 59429773 59430158 -41950363 + MLT2A1 LTR ERVL 2 388 -56 354 138 35 0 chr15 59430164 59430222 -41950299 - MER21A LTR ERV1 -871 60 1 1775 223 52 33 chr15 59430806 59431067 -41949454 + MLT1F LTR MaLR 113 387 -155 2292 81 32 0 chr15 59431067 59431351 -41949170 + AluSg SINE Alu 2 294 -16 1775 223 52 33 chr15 59431351 59431511 -41949010 + MLT1F LTR MaLR 387 542 0 1946 130 0 57 chr15 59431871 59432186 -41948335 + AluSx SINE Alu 1 297 -15 611 172 33 16 chr15 59432540 59432662 -41947859 - AluJb SINE Alu -187 125 2 48 32 0 0 chr15 59432723 59432785 -41947736 + AT_rich Low_complexity Low_complexity 1 62 0 25 0 0 0 chr15 59433511 59433536 -41946985 + AT_rich Low_complexity Low_complexity 1 25 0 1213 122 31 44 chr15 59433625 59433786 -41946735 - L1MA7 LINE L1 -10 6281 6122 2105 139 3 0 chr15 59433786 59434081 -41946440 + AluJb SINE Alu 1 296 -16 1213 122 31 44 chr15 59434081 59434148 -41946373 - L1MA7 LINE L1 -169 6122 6056 21 0 0 0 chr15 59434189 59434210 -41946311 + AT_rich Low_complexity Low_complexity 1 21 0 2354 87 3 0 chr15 59434219 59434533 -41945988 + AluSq SINE Alu 1 315 0 1916 141 0 37 chr15 59434564 59434862 -41945659 + AluSx SINE Alu 1 287 -25 941 193 6 0 chr15 59434881 59435052 -41945469 + FAM SINE Alu 1 172 -3 2436 72 3 10 chr15 59435052 59435357 -41945164 + AluY SINE Alu 1 303 -8 246 298 24 12 chr15 59435454 59435538 -41944983 + L2 LINE L2 3212 3296 -17 594 265 118 12 chr15 59435539 59435764 -41944757 - L1M4 LINE L1 -333 5788 5562 186 43 0 0 chr15 59435808 59435831 -41944690 + (A)n Simple_repeat Simple_repeat 1 23 0 704 126 0 68 chr15 59436468 59436659 -41943862 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 232 186 14 14 chr15 59436661 59436731 -41943790 + GA-rich Low_complexity Low_complexity 2 71 0 239 235 143 25 chr15 59436758 59436877 -41943644 + MIR3 SINE MIR 68 200 -8 1168 147 66 5 chr15 59437474 59437672 -41942849 + AluJb SINE Alu 87 296 -16 345 246 40 149 chr15 59438330 59438485 -41942036 - LTR16A LTR ERVL -15 435 311 2376 101 0 0 chr15 59438485 59438792 -41941729 + AluSg SINE Alu 2 308 -2 345 246 40 149 chr15 59438792 59438864 -41941657 - LTR16A LTR ERVL -139 311 233 2129 96 11 4 chr15 59439261 59439564 -41940957 - AluSx SINE Alu 0 305 1 362 265 68 17 chr15 59439565 59439682 -41940839 - MIR SINE MIR -56 152 30 2324 112 3 0 chr15 59440950 59441254 -41939267 + AluSx SINE Alu 5 309 -3 885 240 112 53 chr15 59441323 59442074 -41938447 + L1MC5 LINE L1 7258 7929 -32 2032 132 0 3 chr15 59442082 59442371 -41938150 + AluSx SINE Alu 1 288 -24 22 35 0 0 chr15 59443513 59443542 -41936979 + AT_rich Low_complexity Low_complexity 1 29 0 2026 153 3 10 chr15 59444184 59444498 -41936023 - AluSx SINE Alu 0 312 1 189 0 0 0 chr15 59444510 59444531 -41935990 + (A)n Simple_repeat Simple_repeat 1 21 0 692 207 0 0 chr15 59444531 59444647 -41935874 - FLAM_C SINE Alu -26 117 2 202 204 167 111 chr15 59446256 59446364 -41934157 - L2 LINE L2 -5 3308 3195 1611 162 18 11 chr15 59447220 59447504 -41933017 - AluJo SINE Alu -8 304 19 31 58 0 0 chr15 59448251 59448303 -41932218 + GC_rich Low_complexity Low_complexity 1 52 0 213 200 0 0 chr15 59448385 59448430 -41932091 + (CGG)n Simple_repeat Simple_repeat 1 45 0 1563 80 0 0 chr15 59451706 59451893 -41928628 - AluSx SINE Alu -125 187 1 605 307 117 39 chr15 59453096 59453558 -41926963 + L1MC/D LINE L1 5307 5804 -2004 21 36 0 0 chr15 59453575 59453603 -41926918 + AT_rich Low_complexity Low_complexity 1 28 0 2065 126 20 0 chr15 59453649 59453951 -41926570 - AluSx SINE Alu -4 308 1 1906 145 48 0 chr15 59454532 59454822 -41925699 - AluSx SINE Alu -8 304 1 1703 156 6 44 chr15 59455060 59455381 -41925140 - AluJo SINE Alu -3 309 1 536 240 87 0 chr15 59455501 59455651 -41924870 - MER5A DNA MER1_type 0 189 27 2390 95 3 45 chr15 59455874 59456231 -41924290 + THE1C LTR MaLR 1 342 -33 9006 98 86 68 chr15 59456240 59457793 -41922728 + THE1C-int LTR MaLR 1 1580 0 2317 93 65 8 chr15 59457793 59458148 -41922373 + THE1C LTR MaLR 1 375 0 1790 154 0 0 chr15 59458628 59458895 -41921626 - AluSx SINE Alu -9 303 37 377 107 0 0 chr15 59459104 59459160 -41921361 - Alu SINE Alu -1 301 246 185 195 24 0 chr15 59459332 59459373 -41921148 + MER5B DNA MER1_type 1 42 -136 * 455 163 61 20 chr15 59459366 59459464 -41921057 - MER5B DNA MER1_type -75 103 2 * 747 245 69 0 chr15 59459464 59459676 -41920845 + L2 LINE L2 584 810 -2504 819 169 99 29 chr15 59459692 59459864 -41920657 + MER20 DNA MER1_type 36 219 0 477 270 68 0 chr15 59459941 59460089 -41920432 + MER112 DNA MER1_type 92 249 -11 1067 256 284 28 chr15 59460097 59460775 -41919746 + L2 LINE L2 805 1308 -2006 2006 112 77 0 chr15 59460775 59461062 -41919459 + AluSg SINE Alu 1 309 -1 1067 256 284 28 chr15 59461062 59461220 -41919301 + L2 LINE L2 1308 1856 -1458 728 139 98 0 chr15 59461222 59461344 -41919177 - AluJb SINE Alu -174 138 5 281 281 105 33 chr15 59461347 59461557 -41918964 + L2 LINE L2 1873 2097 -1217 384 244 139 28 chr15 59461667 59461847 -41918674 + L2 LINE L2 3112 3311 -2 257 308 26 51 chr15 59462998 59463115 -41917406 + MER5B DNA MER1_type 3 116 -62 933 164 64 20 chr15 59463923 59464129 -41916392 - MLT1B LTR MaLR 0 467 196 2282 190 22 28 chr15 59464129 59464592 -41915929 - MER66B LTR ERV1 0 486 27 953 189 15 20 chr15 59464613 59464809 -41915712 - MLT1B LTR MaLR -195 195 1 260 300 92 8 chr15 59465161 59465281 -41915240 - MER5A DNA MER1_type 0 189 60 227 329 93 21 chr15 59465184 59465324 -41915197 + MER5A DNA MER1_type 35 184 -5 * 1896 145 7 24 chr15 59465450 59465769 -41914752 + AluSq SINE Alu 1 313 0 362 242 220 8 chr15 59466125 59466257 -41914264 - MER5A DNA MER1_type -21 168 9 231 260 0 0 chr15 59466472 59466522 -41913999 + MER5A DNA MER1_type 4 53 -136 1375 175 39 45 chr15 59466606 59466628 -41913893 - AluJb SINE Alu 0 312 291 836 141 0 15 chr15 59466628 59466763 -41913758 - AluJo/FLAM SINE Alu -169 133 1 186 43 0 0 chr15 59466769 59466792 -41913729 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1375 175 39 45 chr15 59466792 59467071 -41913450 - AluJb SINE Alu -26 286 6 2544 76 0 0 chr15 59467765 59468069 -41912452 + AluSg SINE Alu 1 304 -6 380 168 18 0 chr15 59468183 59468270 -41912251 + L1ME1 LINE L1 6088 6184 0 246 266 62 44 chr15 59468575 59468688 -41911833 - MIR SINE MIR -74 134 20 198 301 0 27 chr15 59468863 59468936 -41911585 - L2 LINE L2 -52 3220 3150 396 278 33 13 chr15 59469043 59469194 -41911327 + MIR SINE MIR 83 236 -26 495 0 0 0 chr15 59469232 59469287 -41911234 + (TG)n Simple_repeat Simple_repeat 2 56 0 428 237 31 0 chr15 59469905 59470002 -41910519 + MER5A DNA MER1_type 10 109 -80 200 232 18 36 chr15 59470143 59470199 -41910322 - MIR SINE MIR -187 75 21 250 321 50 0 chr15 59471014 59471135 -41909386 - MIR SINE MIR -78 130 2 5757 65 4 19 chr15 59472165 59472243 -41908278 + L1PA6 LINE L1 5414 5492 -662 2205 78 4 7 chr15 59472243 59472552 -41907969 + AluY SINE Alu 1 308 0 5757 65 4 19 chr15 59472552 59473224 -41907297 + L1PA6 LINE L1 5492 6154 0 216 86 0 0 chr15 59473743 59473778 -41906743 + (T)n Simple_repeat Simple_repeat 1 35 0 1294 138 0 27 chr15 59474976 59475200 -41905321 - MER20 DNA MER1_type -1 218 1 2157 102 28 0 chr15 59476048 59476331 -41904190 + AluSx SINE Alu 1 291 -21 56 0 0 0 chr15 59476739 59476795 -41903726 + AT_rich Low_complexity Low_complexity 1 56 0 2567 72 0 0 chr15 59477100 59477407 -41903114 + AluY SINE Alu 1 307 -4 189 132 0 0 chr15 59478554 59478592 -41901929 + (TG)n Simple_repeat Simple_repeat 1 38 0 1772 144 27 30 chr15 59479697 59479996 -41900525 + AluJb SINE Alu 1 298 -14 194 299 87 39 chr15 59480995 59481122 -41899399 + L2 LINE L2 3125 3257 -15 1987 122 7 4 chr15 59482448 59482727 -41897794 + AluSq SINE Alu 1 280 -33 186 43 0 0 chr15 59482731 59482754 -41897767 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1677 159 35 28 chr15 59482997 59483286 -41897235 + AluJo SINE Alu 1 291 -21 220 333 67 27 chr15 59483937 59484087 -41896434 - MIR3 SINE MIR -5 203 48 298 277 50 8 chr15 59484573 59484692 -41895829 + MIR3 SINE MIR 54 177 -31 324 289 119 26 chr15 59485336 59485530 -41894991 + L2 LINE L2 2847 3058 -214 301 226 0 0 chr15 59485653 59485715 -41894806 - L2 LINE L2 0 3313 3252 424 144 93 0 chr15 59485849 59485946 -41894575 - MER5A DNA MER1_type -77 112 7 184 247 136 12 chr15 59487799 59487880 -41892641 + MIR SINE MIR 33 123 -85 2193 107 3 31 chr15 59488103 59488422 -41892099 - AluSx SINE Alu -2 310 1 278 219 219 0 chr15 59488433 59488529 -41891992 + L2 LINE L2 3151 3267 -5 2136 108 0 35 chr15 59488847 59489161 -41891360 - AluSx SINE Alu -9 303 1 1458 174 107 0 chr15 59490027 59490297 -41890224 - AluJo SINE Alu -13 299 1 24 53 0 0 chr15 59490307 59490345 -41890176 + AT_rich Low_complexity Low_complexity 1 38 0 2349 91 16 0 chr15 59490422 59490729 -41889792 - AluSx SINE Alu 0 312 1 2354 88 7 3 chr15 59490957 59491262 -41889259 + AluSp SINE Alu 1 306 -7 2417 67 3 7 chr15 59493061 59493361 -41887160 - AluSg SINE Alu -11 299 1 1813 186 98 34 chr15 59493489 59493930 -41886591 - MLT1D LTR MaLR -4 501 33 1654 216 58 113 chr15 59494617 59495336 -41885185 - L1MC4 LINE L1 -5 8037 7358 2128 133 39 30 chr15 59496215 59496576 -41883945 + THE1B LTR MaLR 1 364 0 734 254 10 10 chr15 59497301 59497502 -41883019 + MIR SINE MIR 61 261 -1 2176 122 0 3 chr15 59497533 59497836 -41882685 + AluSx SINE Alu 1 302 -10 332 300 139 17 chr15 59497856 59498036 -41882485 - MIR SINE MIR -41 221 20 2177 106 3 0 chr15 59498102 59498386 -41882135 + AluSg SINE Alu 9 293 -17 542 258 93 0 chr15 59498393 59498575 -41881946 - MIR SINE MIR -5 257 59 312 263 25 0 chr15 59500287 59500367 -41880154 + MIR3 SINE MIR 91 172 -36 756 204 36 12 chr15 59501016 59501183 -41879338 + L1ME4a LINE L1 5710 5880 -290 204 341 0 12 chr15 59501316 59501401 -41879120 - MIR3 SINE MIR -15 193 110 295 253 116 34 chr15 59502707 59502853 -41877668 - MIR SINE MIR -12 250 93 261 286 144 7 chr15 59505983 59506122 -41874399 - MIR SINE MIR -65 143 43 714 266 115 13 chr15 59507268 59507494 -41873027 + MIR SINE MIR 3 251 -11 2340 68 0 4 chr15 59507916 59508217 -41872304 + AluSg SINE Alu 1 300 0 21 0 0 0 chr15 59509513 59509534 -41870987 + AT_rich Low_complexity Low_complexity 1 21 0 363 306 0 8 chr15 59510331 59510455 -41870066 + L2 LINE L2 3191 3313 0 2355 70 0 7 chr15 59511174 59511483 -41869038 + AluSg SINE Alu 1 307 0 249 33 0 0 chr15 59511554 59511584 -41868937 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 261 0 0 0 chr15 59511583 59511612 -41868909 + (CA)n Simple_repeat Simple_repeat 1 29 0 2433 189 21 25 chr15 59511724 59512252 -41868269 - L1M4 LINE L1 -1124 5022 4497 229 191 83 0 chr15 59513187 59513271 -41867250 + L1ME4a LINE L1 6029 6119 -2 2119 130 0 7 chr15 59516068 59516375 -41864146 - AluSx SINE Alu -7 305 1 228 86 0 0 chr15 59516469 59516504 -41864017 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2224 102 3 10 chr15 59516527 59516830 -41863691 + AluSp SINE Alu 1 301 -12 1816 146 28 3 chr15 59516964 59517251 -41863270 - AluJb SINE Alu -5 307 14 563 88 0 0 chr15 59518247 59518327 -41862194 - AluJb SINE Alu 0 312 233 881 138 29 14 chr15 59518327 59518465 -41862056 - AluJb SINE Alu -172 140 1 280 322 0 23 chr15 59519223 59519310 -41861211 - L2 LINE L2 0 3313 3229 251 319 64 0 chr15 59519846 59519940 -41860581 - MER5A DNA MER1_type -83 106 7 203 293 38 47 chr15 59520015 59520121 -41860400 + MER5A DNA MER1_type 83 187 -2 188 33 0 33 chr15 59520453 59520483 -41860038 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 2251 110 0 0 chr15 59522520 59522812 -41857709 + AluSx SINE Alu 1 292 -20 293 298 46 15 chr15 59523035 59523166 -41857355 - MIR SINE MIR -80 182 48 2080 94 50 3 chr15 59523857 59524154 -41856367 - AluY SINE Alu 0 311 1 900 48 0 0 chr15 59524158 59524261 -41856260 - AluYb8 SINE Alu -215 103 1 24 0 0 0 chr15 59524312 59524336 -41856185 + AT_rich Low_complexity Low_complexity 1 24 0 2479 134 133 61 chr15 59524670 59525034 -41855487 + MER4A LTR ERV1 1 337 -263 405 0 0 0 chr15 59525034 59525079 -41855442 + (TG)n Simple_repeat Simple_repeat 2 46 0 2479 134 133 61 chr15 59525079 59525092 -41855429 + MER4A LTR ERV1 337 348 -252 2314 100 0 17 chr15 59525092 59525391 -41855130 - AluSx SINE Alu -18 294 1 2479 134 133 61 chr15 59525391 59525570 -41854951 + MER4A LTR ERV1 348 598 -2 1766 240 119 10 chr15 59526368 59526863 -41853658 - MLT1F1 LTR MaLR -16 551 3 2282 107 0 0 chr15 59527250 59527548 -41852973 - AluSg SINE Alu -12 298 1 1914 146 6 19 chr15 59528320 59528500 -41852021 - AluJo SINE Alu 0 312 131 207 0 0 0 chr15 59528500 59528523 -41851998 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1539 86 131 5 chr15 59528523 59528745 -41851776 - AluY SINE Alu -27 284 35 1914 146 6 19 chr15 59528745 59528878 -41851643 - AluJo SINE Alu -179 133 2 962 253 36 74 chr15 59529722 59530114 -41850407 + L1MC4 LINE L1 7350 7726 -316 232 294 96 28 chr15 59530231 59530449 -41850072 + L1MC4 LINE L1 7804 8036 -6 250 219 117 63 chr15 59530694 59530899 -41849622 - L1MC/D LINE L1 -2320 5488 5273 2823 168 94 27 chr15 59530994 59531620 -41848901 + L1MA7 LINE L1 5620 6287 -4 891 227 0 0 chr15 59531975 59532147 -41848374 - AluJ SINE Alu 0 312 141 894 154 0 0 chr15 59532203 59532333 -41848188 - AluJ SINE Alu -181 131 2 2361 108 0 0 chr15 59533080 59533386 -41847135 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr15 59533613 59533635 -41846886 + AT_rich Low_complexity Low_complexity 1 22 0 307 234 26 0 chr15 59534156 59534229 -41846292 - MER5A DNA MER1_type -81 106 20 2320 184 22 31 chr15 59534243 59534975 -41845546 - MER21B LTR ERV1 -73 790 6 242 232 49 12 chr15 59535016 59535098 -41845423 + MIR SINE MIR 37 121 -87 191 250 0 0 chr15 59535108 59535152 -41845369 + L2 LINE L2 3199 3242 -71 205 250 83 56 chr15 59535358 59535466 -41845055 + MER5B DNA MER1_type 37 147 -31 608 152 0 0 chr15 59535478 59535570 -41844951 + FLAM_A SINE Alu 23 114 -28 216 0 0 0 chr15 59535576 59535600 -41844921 + (CA)n Simple_repeat Simple_repeat 2 25 0 197 273 0 0 chr15 59535606 59535650 -41844871 - MER5B DNA MER1_type -134 44 1 2137 122 3 0 chr15 59535665 59535961 -41844560 - AluSg SINE Alu -13 297 1 250 200 368 0 chr15 59536279 59536404 -41844117 + MER5B DNA MER1_type 2 172 -6 1349 146 49 0 chr15 59536894 59537120 -41843401 - L1MA5 LINE L1 -6 6294 6058 2348 69 14 0 chr15 59537133 59537423 -41843098 - AluY SINE Alu -17 294 1 230 196 22 0 chr15 59537663 59537709 -41842812 - MIR SINE MIR -66 142 96 1999 132 4 7 chr15 59538048 59538329 -41842192 + AluSx SINE Alu 1 280 -32 21 23 0 47 chr15 59540143 59540165 -41840356 + AT_rich Low_complexity Low_complexity 1 22 -19 2338 91 3 3 chr15 59540165 59540463 -41840058 + AluSx SINE Alu 1 298 -14 21 23 0 47 chr15 59540463 59540483 -41840038 + AT_rich Low_complexity Low_complexity 22 41 0 305 239 15 62 chr15 59541228 59541358 -41839163 + L1MC5 LINE L1 7813 7936 -25 2306 85 3 0 chr15 59542303 59542597 -41837924 - AluY SINE Alu -16 295 1 343 214 0 0 chr15 59542597 59542653 -41837868 - Tigger7 DNA MER2_type -2405 82 27 749 311 27 54 chr15 59542674 59543115 -41837406 - MLT1K LTR MaLR -12 576 148 409 349 15 0 chr15 59543412 59543544 -41836977 - L2 LINE L2 -1 3271 3138 2402 88 3 0 chr15 59543583 59543877 -41836644 + AluSc SINE Alu 1 295 -14 2364 76 0 30 chr15 59545043 59545345 -41835176 - AluY SINE Alu -18 293 1 279 0 0 0 chr15 59545622 59545653 -41834868 + (TG)n Simple_repeat Simple_repeat 2 32 0 186 161 0 0 chr15 59545903 59545934 -41834587 + L2 LINE L2 3279 3309 -4 285 164 82 0 chr15 59548501 59548562 -41831959 - MLT1K LTR MaLR -30 558 493 641 185 22 30 chr15 59549406 59549541 -41830980 - FLAM_C SINE Alu -8 135 2 390 21 0 0 chr15 59549583 59549630 -41830891 + (TCCA)n Simple_repeat Simple_repeat 1 47 0 249 310 62 35 chr15 59549631 59549744 -41830777 - L2 LINE L2 -25 3247 3132 244 289 48 38 chr15 59550011 59550132 -41830389 - MER5B DNA MER1_type -51 127 17 3543 128 25 4 chr15 59550911 59551426 -41829095 - MER1A DNA MER1_type -1 526 1 2032 126 18 0 chr15 59551497 59551621 -41828900 + AluSg SINE Alu 1 121 -189 315 0 0 0 chr15 59551621 59551656 -41828865 + (CA)n Simple_repeat Simple_repeat 2 36 0 2032 126 18 0 chr15 59551656 59551817 -41828704 + AluSg SINE Alu 121 291 -19 759 242 111 5 chr15 59552124 59552314 -41828207 - MER20 DNA MER1_type -9 210 1 3358 199 24 2 chr15 59552408 59553046 -41827475 - MER82 DNA MER2_type 0 653 2 234 261 152 11 chr15 59553177 59553269 -41827252 - L1ME LINE L1 -490 5631 5527 2181 97 38 0 chr15 59553321 59553611 -41826910 + AluSx SINE Alu 1 301 -11 22 35 0 0 chr15 59553768 59553797 -41826724 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr15 59553911 59553939 -41826582 + AT_rich Low_complexity Low_complexity 1 28 0 282 307 115 24 chr15 59555711 59555998 -41824523 - L1ME LINE L1 -1098 5048 4736 358 300 118 35 chr15 59556039 59556326 -41824195 - L1ME LINE L1 -1436 4710 4400 1651 168 57 20 chr15 59556408 59556706 -41823815 - AluJb SINE Alu -3 309 1 296 303 86 12 chr15 59556763 59556925 -41823596 - L1P LINE L1 -1911 4235 4062 1963 66 4 46 chr15 59557689 59557948 -41822573 - AluSq SINE Alu -65 248 1 3576 103 14 59 chr15 59558560 59559152 -41821369 - MER34B LTR ERV1 0 565 1 946 113 0 0 chr15 59560347 59560480 -41820041 - AluSg/x SINE Alu -11 301 169 1402 90 6 0 chr15 59560556 59560733 -41819788 - AluSq SINE Alu -135 178 1 252 0 0 0 chr15 59562636 59562664 -41817857 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 6164 84 27 3 chr15 59562666 59563012 -41817509 - L1PB1 LINE L1 -13 6138 5802 585 0 0 0 chr15 59563012 59563077 -41817444 + (CA)n Simple_repeat Simple_repeat 1 65 0 6164 84 27 3 chr15 59563077 59563786 -41816735 - L1PB1 LINE L1 -349 5802 5063 2280 103 7 3 chr15 59564730 59565032 -41815489 + AluSx SINE Alu 1 303 -9 203 259 170 45 chr15 59565828 59565940 -41814581 - L2 LINE L2 -10 3262 3137 279 0 0 0 chr15 59566016 59566047 -41814474 + (TG)n Simple_repeat Simple_repeat 2 32 0 361 191 96 0 chr15 59566047 59566141 -41814380 + MIR SINE MIR 104 206 -56 354 281 47 23 chr15 59566378 59566506 -41814015 - L2 LINE L2 -1 3312 3182 749 182 0 0 chr15 59566726 59566847 -41813674 - AluJo SINE Alu -9 303 183 518 234 37 0 chr15 59566850 59566957 -41813564 - AluJo SINE Alu -200 112 2 30 0 0 0 chr15 59566961 59566991 -41813530 + AT_rich Low_complexity Low_complexity 1 30 0 468 298 116 35 chr15 59567002 59567509 -41813012 - L1ME4a LINE L1 -20 6101 5554 1911 137 0 14 chr15 59567658 59567943 -41812578 + AluSx SINE Alu 1 281 -31 1061 235 155 31 chr15 59568983 59569429 -41811092 - MLT1D LTR MaLR 0 505 5 282 268 14 0 chr15 59570605 59570676 -41809845 + CT-rich Low_complexity Low_complexity 2 73 0 966 209 33 0 chr15 59570723 59570934 -41809587 - MER20 DNA MER1_type -1 218 1 369 0 0 0 chr15 59571009 59571050 -41809471 + (TG)n Simple_repeat Simple_repeat 2 42 0 583 231 111 32 chr15 59571721 59571937 -41808584 - L1MC5 LINE L1 -52 7909 7677 1918 122 0 28 chr15 59572343 59572630 -41807891 - AluJo SINE Alu -12 300 22 183 156 0 0 chr15 59573863 59573895 -41806626 + T-rich Low_complexity Low_complexity 1 32 0 1793 175 6 16 chr15 59574400 59574715 -41805806 + AluJo SINE Alu 1 312 0 345 130 65 26 chr15 59574837 59574914 -41805607 - MER5C DNA MER1_type -196 128 49 258 32 0 0 chr15 59575001 59575032 -41805489 + (CA)n Simple_repeat Simple_repeat 2 32 0 520 111 0 0 chr15 59575604 59575685 -41804836 + AluS SINE Alu 228 308 -1 189 0 0 0 chr15 59575988 59576009 -41804512 + (T)n Simple_repeat Simple_repeat 1 21 0 2467 74 3 3 chr15 59576555 59576865 -41803656 + AluSp SINE Alu 2 311 -2 500 220 6 71 chr15 59576912 59577080 -41803441 + L1MC5 LINE L1 7749 7905 -56 3814 63 2 0 chr15 59577090 59577563 -41802958 - L1PA6 LINE L1 -4 6150 5677 2303 96 3 0 chr15 59577683 59577976 -41802545 + AluSx SINE Alu 7 300 -12 1047 191 43 9 chr15 59579573 59579783 -41800738 - L1MC1 LINE L1 -1 6332 6116 255 103 0 0 chr15 59579786 59579825 -41800696 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 1833 161 0 0 chr15 59579829 59580103 -41800418 - AluJb SINE Alu -38 274 1 1971 139 5 46 chr15 59580103 59580269 -41800252 - L1MC1 LINE L1 -206 6127 5956 2183 109 16 3 chr15 59580269 59580572 -41799949 - AluSq SINE Alu -6 307 1 1971 139 5 46 chr15 59580572 59580768 -41799753 - L1MC1 LINE L1 -377 5956 5780 2337 114 0 0 chr15 59581154 59581462 -41799059 + AluSq SINE Alu 1 308 -5 483 18 0 0 chr15 59581585 59581641 -41798880 + (CA)n Simple_repeat Simple_repeat 1 56 0 315 333 44 7 chr15 59581736 59581871 -41798650 - L2 LINE L2 -18 3254 3115 269 225 70 0 chr15 59583120 59583191 -41797330 - L2 LINE L2 -48 3265 3190 249 323 8 39 chr15 59584718 59584848 -41795673 - MIR SINE MIR -12 250 125 342 259 168 5 chr15 59585332 59585509 -41795012 - MIR SINE MIR -40 222 19 370 273 154 63 chr15 59586845 59587282 -41793239 - L1ME4a LINE L1 -195 5926 5413 2382 75 0 0 chr15 59587282 59587574 -41792947 - AluY SINE Alu -19 292 1 370 273 154 63 chr15 59587574 59587680 -41792841 - L1ME4a LINE L1 -708 5413 5318 2039 127 14 0 chr15 59587751 59588035 -41792486 + AluSq SINE Alu 5 292 -21 418 101 13 13 chr15 59588035 59588114 -41792407 + (TA)n Simple_repeat Simple_repeat 1 79 0 207 139 0 0 chr15 59589510 59589546 -41790975 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 607 285 58 52 chr15 59589546 59589663 -41790858 + L1MC4a LINE L1 5598 5713 -2095 2234 98 3 3 chr15 59589663 59589959 -41790562 - AluSx SINE Alu -16 296 1 607 285 58 52 chr15 59589959 59590171 -41790350 + L1MC4a LINE L1 5713 5929 -1879 1489 167 51 27 chr15 59590479 59590773 -41789748 + AluJo SINE Alu 1 301 -11 180 0 0 0 chr15 59591177 59591197 -41789324 + (A)n Simple_repeat Simple_repeat 1 20 0 279 185 252 0 chr15 59591813 59591932 -41788589 + L1ME4a LINE L1 5970 6118 -3 1637 103 0 0 chr15 59593520 59593734 -41786787 + AluSg/x SINE Alu 83 296 -16 21 0 0 0 chr15 59593797 59593818 -41786703 + AT_rich Low_complexity Low_complexity 1 21 0 342 0 0 0 chr15 59596888 59596926 -41783595 + (TG)n Simple_repeat Simple_repeat 2 39 0 3571 151 40 47 chr15 59597714 59598534 -41781987 + MER4D LTR ERV1 1 903 0 336 24 0 0 chr15 59601600 59601641 -41778880 + (CG)n Simple_repeat Simple_repeat 2 42 0 5034 133 94 15 chr15 59602136 59602427 -41778094 + L1MA8 LINE L1 5191 5458 -833 2299 72 38 0 chr15 59602427 59602718 -41777803 + AluSq SINE Alu 1 302 -11 5034 133 94 15 chr15 59602718 59603280 -41777241 + L1MA8 LINE L1 5458 6139 -152 2389 45 42 7 chr15 59603280 59603567 -41776954 + AluY SINE Alu 1 297 -14 5034 133 94 15 chr15 59603567 59603721 -41776800 + L1MA8 LINE L1 6139 6280 -11 2073 134 7 10 chr15 59603744 59604042 -41776479 + AluSx SINE Alu 1 297 -15 254 252 57 49 chr15 59604058 59604181 -41776340 - HAL1 LINE L1 -6 2501 2378 2290 127 8 14 chr15 59604970 59605333 -41775188 - MER46B DNA MER2_type 0 236 1 1298 101 0 5 chr15 59606415 59606604 -41773917 - L1 LINE L1 -1315 4831 4644 22 35 0 0 chr15 59606628 59606657 -41773864 + AT_rich Low_complexity Low_complexity 1 29 0 2334 235 54 30 chr15 59709700 59710406 -41670115 - L1ME LINE L1 -4153 1927 1205 252 0 0 0 chr15 59710406 59710434 -41670087 + (T)n Simple_repeat Simple_repeat 1 28 0 423 98 0 65 chr15 59710436 59710528 -41669993 - SVA Other Other -627 759 674 5685 70 23 54 chr15 59710542 59711593 -41668928 - SVA Other Other -520 866 23 2158 103 3 28 chr15 59711693 59712013 -41668508 + AluSx SINE Alu 1 312 0 2245 110 0 7 chr15 59712621 59712922 -41667599 - AluSx SINE Alu -13 299 1 687 281 79 47 chr15 59713210 59713551 -41666970 + L1MDa LINE L1 34 385 -6155 2955 218 62 36 chr15 59713707 59713997 -41666524 + L1MDa LINE L1 770 1051 -5489 1559 145 78 46 chr15 59713997 59714279 -41666242 + AluJo SINE Alu 1 291 -21 2955 218 62 36 chr15 59714279 59714899 -41665622 + L1MDa LINE L1 1051 1679 -4861 415 271 16 29 chr15 59714918 59715136 -41665385 - L1ME LINE L1 -5101 969 783 2199 120 0 0 chr15 59715513 59715805 -41664716 - AluSx SINE Alu -20 292 1 2274 103 0 13 chr15 59715905 59716217 -41664304 - AluSq SINE Alu -5 308 1 198 167 0 0 chr15 59716440 59716476 -41664045 + (CA)n Simple_repeat Simple_repeat 2 37 0 212 296 27 27 chr15 59716477 59716589 -41663932 + MER5A DNA MER1_type 77 177 -1 1118 188 11 71 chr15 59718119 59718176 -41662345 + L1MD3 LINE L1 7730 7789 -206 2529 62 7 3 chr15 59718176 59718481 -41662040 + AluY SINE Alu 1 306 -5 1118 188 11 71 chr15 59718481 59718705 -41661816 + L1MD3 LINE L1 7789 7994 -1 577 278 94 31 chr15 59718814 59719134 -41661387 + L1MC4a LINE L1 5480 5819 -302 2404 106 0 0 chr15 59719167 59719479 -41661042 + AluSx SINE Alu 1 312 0 1406 226 85 32 chr15 59719629 59720063 -41660458 + MER74B LTR ERVL 89 545 -77 439 287 44 13 chr15 59721335 59721517 -41659004 + MIR SINE MIR 16 202 -60 22 56 0 0 chr15 59723462 59723498 -41657023 + AT_rich Low_complexity Low_complexity 1 36 0 2127 104 35 0 chr15 59723521 59723809 -41656712 + AluSp SINE Alu 1 298 -15 213 190 0 51 chr15 59723867 59723946 -41656575 + GA-rich Low_complexity Low_complexity 2 76 0 313 359 15 30 chr15 59724560 59724705 -41655816 + MIR SINE MIR 2 145 -117 2059 119 3 3 chr15 59724705 59724998 -41655523 + AluSx SINE Alu 5 297 -15 313 359 15 30 chr15 59724998 59725050 -41655471 + MIR SINE MIR 145 196 -66 1726 148 48 28 chr15 59726814 59727104 -41653417 + AluSx SINE Alu 1 296 -16 641 274 129 74 chr15 59728015 59728510 -41652011 + L1MC4a LINE L1 5856 6322 -1486 264 30 0 0 chr15 59728510 59728543 -41651978 + (CA)n Simple_repeat Simple_repeat 2 34 0 641 274 129 74 chr15 59728543 59729045 -41651476 + L1MC4a LINE L1 6322 6908 -900 579 162 110 19 chr15 59729043 59729197 -41651324 - L1MC5 LINE L1 -49 7912 7745 * 517 204 182 51 chr15 59729207 59729520 -41651001 + L1MC5 LINE L1 6886 7239 -722 621 231 53 82 chr15 59729646 59729928 -41650593 + L1MC5 LINE L1 7261 7534 -427 * 2980 185 58 4 chr15 59729920 59731056 -41649465 + L1MB7 LINE L1 4738 5930 -254 204 263 26 53 chr15 59731193 59731269 -41649252 - MIR SINE MIR -69 139 66 1650 229 46 33 chr15 59731798 59732344 -41648177 + L1ME LINE L1 2318 2870 -3276 955 183 78 58 chr15 59732484 59732741 -41647780 - HAL1 LINE L1 0 2507 2246 501 236 104 0 chr15 59733202 59733346 -41647175 - MIR SINE MIR -48 214 56 454 298 107 8 chr15 59734985 59735227 -41645294 + L1ME4a LINE L1 5479 5744 -377 269 171 0 0 chr15 59735230 59735271 -41645250 - 5S rRNA rRNA -79 42 2 314 298 44 19 chr15 59735272 59735430 -41645091 + L1ME4a LINE L1 5733 5894 -227 446 244 209 25 chr15 59737963 59738164 -41642357 - MIR SINE MIR -12 250 13 1150 194 133 7 chr15 59738231 59738509 -41642012 + MER58B DNA MER1_type 3 315 -26 1366 158 147 19 chr15 59738571 59738837 -41641684 + AluJb SINE Alu 1 300 -2 389 261 87 0 chr15 59738879 59738994 -41641527 - MIR SINE MIR -56 206 82 3578 148 8 3 chr15 59739443 59740043 -41640478 + L1PB3 LINE L1 5552 6154 0 1550 263 57 2 chr15 59740251 59740726 -41639795 + L1ME LINE L1 4431 4931 -1215 1022 190 139 0 chr15 59740706 59740922 -41639599 + L1MD2 LINE L1 6055 6300 -59 * 3061 188 25 7 chr15 59740934 59741524 -41638997 - L1MB8 LINE L1 -106 6072 5472 2108 138 0 0 chr15 59741774 59742077 -41638444 - AluSx SINE Alu 0 303 1 208 308 26 26 chr15 59742304 59742382 -41638139 - MIR3 SINE MIR -26 182 105 2578 80 0 0 chr15 59742427 59742738 -41637783 - AluY SINE Alu 0 311 1 306 0 0 0 chr15 59748885 59748919 -41631602 + (TG)n Simple_repeat Simple_repeat 2 35 0 324 264 72 16 chr15 59748995 59749120 -41631401 - L1ME LINE L1 -313 5808 5677 330 270 94 64 chr15 59749414 59749681 -41630840 - L1ME LINE L1 -481 5640 5366 29 47 0 0 chr15 59749728 59749771 -41630750 + AT_rich Low_complexity Low_complexity 1 43 0 615 259 81 20 chr15 59749808 59750055 -41630466 + L1ME LINE L1 5558 5819 -302 389 343 12 13 chr15 59751511 59751696 -41628825 + MER5A DNA MER1_type 3 176 -2 2325 95 0 16 chr15 59752775 59753080 -41627441 + AluSq SINE Alu 1 300 -13 196 237 186 0 chr15 59753304 59753363 -41627158 + L2 LINE L2 3241 3310 -3 1758 186 0 3 chr15 59753464 59753759 -41626762 - AluJo SINE Alu -18 294 1 535 286 167 5 chr15 59755429 59755639 -41624882 + MIR SINE MIR 16 259 -3 716 277 16 0 chr15 59755659 59755843 -41624678 - MER5A DNA MER1_type -2 187 1 444 244 167 6 chr15 59755937 59756093 -41624428 + MER5A DNA MER1_type 9 189 0 577 260 29 12 chr15 59756102 59756275 -41624246 + MER5B DNA MER1_type 3 178 0 233 358 86 13 chr15 59756761 59756912 -41623609 - MIR3 SINE MIR -3 205 44 26 0 0 0 chr15 59757616 59757642 -41622879 + AT_rich Low_complexity Low_complexity 1 26 0 2423 85 3 0 chr15 59759455 59759750 -41620771 - AluSg SINE Alu -14 296 1 230 338 13 0 chr15 59759811 59759888 -41620633 - L1MC5 LINE L1 -78 7883 7806 378 61 0 0 chr15 59759953 59760002 -41620519 + (CA)n Simple_repeat Simple_repeat 2 50 0 27 49 0 0 chr15 59760473 59760514 -41620007 + AT_rich Low_complexity Low_complexity 1 41 0 843 171 119 5 chr15 59760516 59760726 -41619795 - MER69 DNA AcHobo -106 2420 2187 415 331 19 7 chr15 59760735 59760889 -41619632 - MER69 DNA AcHobo -1584 942 787 * 874 271 39 36 chr15 59760884 59761164 -41619357 - MER69 DNA AcHobo -707 519 239 21 36 0 0 chr15 59762007 59762035 -41618486 + AT_rich Low_complexity Low_complexity 1 28 0 218 250 126 34 chr15 59762377 59762500 -41618021 + MIR3 SINE MIR 61 196 -12 273 247 227 0 chr15 59762559 59762656 -41617865 - L2 LINE L2 0 3272 3154 294 322 93 0 chr15 59762905 59763023 -41617498 - L2 LINE L2 -10 3262 3134 186 156 0 0 chr15 59763061 59763106 -41617415 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 2344 108 0 10 chr15 59764615 59764929 -41615592 - AluSx SINE Alu -1 311 1 238 344 104 0 chr15 59764962 59765058 -41615463 + L2 LINE L2 3190 3295 -18 2174 107 10 23 chr15 59765162 59765471 -41615050 + AluSp SINE Alu 1 305 -8 536 223 38 25 chr15 59765480 59765637 -41614884 - MIR SINE MIR -37 225 67 2328 102 0 13 chr15 59766514 59766829 -41613692 - AluSx SINE Alu -1 311 1 306 0 0 0 chr15 59767233 59767267 -41613254 + (T)n Simple_repeat Simple_repeat 1 34 0 493 292 137 2 chr15 59767857 59768265 -41612256 + L2 LINE L2 1737 2199 -1115 183 80 0 0 chr15 59769958 59769983 -41610538 + (TCTCG)n Simple_repeat Simple_repeat 2 26 0 2331 108 3 0 chr15 59769983 59770289 -41610232 - AluSx SINE Alu -5 307 1 299 289 21 10 chr15 59770499 59770606 -41609915 - MIR SINE MIR -65 143 47 1655 179 55 0 chr15 59771966 59772257 -41608264 + AluJo SINE Alu 1 307 -5 2269 112 0 7 chr15 59772373 59772676 -41607845 - AluSq SINE Alu -11 302 2 1823 135 21 11 chr15 59772684 59772965 -41607556 - AluJb SINE Alu -24 288 5 26 30 0 0 chr15 59774873 59774906 -41605615 + AT_rich Low_complexity Low_complexity 1 33 0 233 173 77 0 chr15 59775347 59775399 -41605122 + Zaphod DNA AcHobo 1175 1230 -2801 320 281 55 0 chr15 59776352 59776480 -41604041 - L3 LINE CR1 -272 1305 1171 1673 171 65 98 chr15 59778610 59779118 -41601403 - L1MA9 LINE L1 -38 6274 5784 336 231 0 13 chr15 59779118 59779196 -41601325 - MARNA DNA Mariner -361 225 149 239 303 56 11 chr15 59779270 59779359 -41601162 + MIR SINE MIR 59 151 -57 708 148 66 66 chr15 59779628 59779693 -41600828 + MER5A DNA MER1_type 7 71 -118 2596 50 0 3 chr15 59779693 59779996 -41600525 + AluY SINE Alu 2 303 -8 708 148 66 66 chr15 59779996 59780113 -41600408 + MER5A DNA MER1_type 70 189 0 301 109 22 0 chr15 59780319 59780365 -41600156 - MLT1A1 LTR MaLR -4 392 346 22 70 0 0 chr15 59780373 59780416 -41600105 + AT_rich Low_complexity Low_complexity 1 43 0 1111 196 71 58 chr15 59780419 59780730 -41599791 - MLT1A1 LTR MaLR -50 315 1 1337 186 89 0 chr15 59781608 59781887 -41598634 + AluJo SINE Alu 1 302 0 2310 93 10 3 chr15 59782079 59782381 -41598140 - AluSp SINE Alu -9 304 1 239 292 50 8 chr15 59782553 59782673 -41597848 - L1ME LINE L1 -691 5475 5351 305 257 74 54 chr15 59782730 59782878 -41597643 - L1ME LINE L1 -869 5277 5127 517 299 86 44 chr15 59782893 59783747 -41596774 - L1ME LINE L1 -1360 4786 3881 2388 62 27 0 chr15 59783843 59784135 -41596386 + AluY SINE Alu 1 300 -11 620 242 29 57 chr15 59784135 59784379 -41596142 + L2 LINE L2 3077 3313 0 338 217 108 25 chr15 59784752 59784872 -41595649 - L1ME LINE L1 -2873 3273 3144 434 260 67 81 chr15 59784872 59785364 -41595157 - L1ME LINE L1 -3531 2615 2131 239 137 98 0 chr15 59785516 59785567 -41594954 - Zaphod DNA AcHobo -2801 1230 1175 224 308 71 24 chr15 59786449 59786618 -41593903 + MIR3 SINE MIR 17 193 -15 490 178 103 182 chr15 59789987 59790229 -41590292 - MER58A DNA MER1_type 0 224 2 311 330 35 0 chr15 59790342 59790457 -41590064 - MIR3 SINE MIR -24 184 66 2386 102 0 3 chr15 59792174 59792478 -41588043 - AluSx SINE Alu -2 310 8 1067 184 118 76 chr15 59792488 59792807 -41587714 + L1MC5 LINE L1 7165 7469 -492 905 193 42 0 chr15 59792807 59793019 -41587502 + L1MA7 LINE L1 6066 6286 -5 1067 184 118 76 chr15 59793019 59793198 -41587323 + L1MC5 LINE L1 7469 7688 -273 2113 130 6 16 chr15 59793198 59793513 -41587008 - AluSx SINE Alu 0 312 1 1067 184 118 76 chr15 59793513 59793529 -41586992 + L1MC5 LINE L1 7688 7702 -259 225 0 0 0 chr15 59794362 59794387 -41586134 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 824 268 136 9 chr15 59795740 59796079 -41584442 - L1ME3A LINE L1 0 6170 5789 523 310 13 0 chr15 59797547 59797705 -41582816 - MIR SINE MIR -18 244 85 240 35 0 0 chr15 59798142 59798171 -41582350 + (T)n Simple_repeat Simple_repeat 1 29 0 323 231 14 91 chr15 59799526 59799603 -41580918 - L1ME3A LINE L1 -51 6119 6056 1987 119 0 56 chr15 59799603 59799923 -41580598 + AluSx SINE Alu 1 302 -10 323 231 14 91 chr15 59799923 59799988 -41580533 - L1ME3A LINE L1 -114 6056 5988 2383 97 10 0 chr15 59802261 59802570 -41577951 - AluSp SINE Alu -1 312 1 289 200 14 14 chr15 59803048 59803118 -41577403 + MER5A DNA MER1_type 15 84 -105 717 218 233 62 chr15 59803137 59803527 -41576994 - MLT1D LTR MaLR -45 460 4 473 282 60 35 chr15 59803728 59803977 -41576544 - MIR SINE MIR -8 254 3 424 314 148 6 chr15 59804263 59804432 -41576089 + MER91A DNA MER1_type 3 195 -1 224 301 120 46 chr15 59805001 59805217 -41575304 + MIR SINE MIR 21 252 -10 249 326 101 40 chr15 59806599 59806875 -41573646 - L2 LINE L2 -353 2961 2669 884 199 108 101 chr15 59806891 59807187 -41573334 - AluJo SINE Alu -3 299 2 2437 84 0 3 chr15 59807587 59807895 -41572626 - AluSq SINE Alu -6 307 1 229 297 91 17 chr15 59808387 59808495 -41572026 + MIR SINE MIR 19 147 -61 216 284 136 30 chr15 59808721 59808890 -41571631 - L3 LINE CR1 -75 1502 1316 196 318 18 45 chr15 59809261 59809371 -41571150 - L2 LINE L2 -208 3064 2958 2278 59 11 0 chr15 59809645 59809918 -41570603 - AluY SINE Alu -9 302 27 206 250 24 60 chr15 59810667 59810751 -41569770 - MIR SINE MIR -111 97 17 234 158 70 18 chr15 59811850 59811907 -41568614 + MIR SINE MIR 123 182 -80 2382 65 24 0 chr15 59811945 59812236 -41568285 + AluSp SINE Alu 1 298 -15 248 333 40 10 chr15 59812236 59812335 -41568186 + MER5A DNA MER1_type 3 104 -85 232 308 140 7 chr15 59812263 59812406 -41568115 - MER5B DNA MER1_type -16 162 1 * 182 37 37 0 chr15 59814022 59814049 -41566472 + (TTTTTG)n Simple_repeat Simple_repeat 1 28 0 230 231 0 0 chr15 59814972 59815024 -41565497 + (CAT)n Simple_repeat Simple_repeat 3 54 0 273 313 73 31 chr15 59815445 59815637 -41564884 + L2 LINE L2 2882 3081 -191 208 93 23 23 chr15 59816493 59816536 -41563985 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 243 0 0 0 chr15 59818410 59818437 -41562084 + (TG)n Simple_repeat Simple_repeat 2 28 0 1722 146 68 4 chr15 59820073 59820353 -41560168 + AluSx SINE Alu 1 298 -14 211 316 38 0 chr15 59820366 59820445 -41560076 + L3b LINE CR1 1416 1497 -86 628 75 0 0 chr15 59821495 59821575 -41558946 + MADE1 DNA Mariner 1 80 0 1738 154 36 14 chr15 59821601 59821881 -41558640 - AluJo SINE Alu -26 286 1 2169 110 23 3 chr15 59822380 59822679 -41557842 - AluSx SINE Alu -7 305 1 914 137 8 0 chr15 59822789 59822920 -41557601 - AluJb SINE Alu -179 133 2 355 204 148 19 chr15 59822937 59822960 -41557561 + MIR SINE MIR 8 27 -235 1888 148 4 0 chr15 59822960 59823237 -41557284 + AluSx SINE Alu 23 300 -12 355 204 148 19 chr15 59823237 59823321 -41557200 + MIR SINE MIR 27 129 -133 205 303 79 0 chr15 59824315 59824391 -41556130 + MIR3 SINE MIR 5 86 -122 350 288 75 52 chr15 59824716 59824928 -41555593 - MIR SINE MIR -28 234 18 265 229 16 0 chr15 59824978 59825039 -41555482 + L2 LINE L2 3247 3308 -5 337 241 46 0 chr15 59825042 59825129 -41555392 - MIR SINE MIR -60 148 58 326 212 100 98 chr15 59825841 59826025 -41554496 - MIR SINE MIR -75 187 4 305 267 129 52 chr15 59826545 59826755 -41553766 + HAL1 LINE L1 91 316 -2191 230 260 130 0 chr15 59826843 59826943 -41553578 + HAL1 LINE L1 2266 2378 -129 232 279 24 61 chr15 59827024 59827044 -41553477 - L1MA10 LINE L1 -1 6333 6314 1904 247 124 37 chr15 59827044 59828625 -41551896 - L1ME2 LINE L1 -9 6089 4377 386 254 50 86 chr15 59828623 59829003 -41551518 - L1ME2 LINE L1 -3823 2257 1925 * 2219 112 0 40 chr15 59829087 59829409 -41551112 - AluSc SINE Alu 0 309 1 652 274 123 41 chr15 59829479 59830361 -41550160 - L1ME2 LINE L1 -4512 1568 678 364 266 149 32 chr15 59830760 59830948 -41549573 - L1ME2 LINE L1 -5855 215 6 711 316 193 38 chr15 59831481 59832451 -41548070 - L2 LINE L2 -411 2903 1784 2797 228 13 21 chr15 59834501 59835100 -41545421 + L1ME3 LINE L1 5341 5936 -226 2263 57 13 27 chr15 59835100 59835401 -41545120 + AluY SINE Alu 1 297 -14 2797 228 13 21 chr15 59835401 59835472 -41545049 + L1ME3 LINE L1 5936 6006 -156 338 250 11 11 chr15 59835479 59835571 -41544950 + L1ME3 LINE L1 6062 6153 -9 346 250 0 0 chr15 59838069 59838145 -41542376 + MIR SINE MIR 1 76 -186 227 224 102 0 chr15 59838186 59838235 -41542286 + L2 LINE L2 3219 3272 0 215 222 0 37 chr15 59840232 59840286 -41540235 - L2 LINE L2 -6 3266 3215 183 80 0 0 chr15 59840809 59840834 -41539687 + (TG)n Simple_repeat Simple_repeat 2 26 0 400 319 56 14 chr15 59840879 59841023 -41539498 + MIR3 SINE MIR 36 185 -23 441 0 0 0 chr15 59841090 59841139 -41539382 + (TG)n Simple_repeat Simple_repeat 1 49 0 553 179 154 17 chr15 59843473 59843590 -41536931 - FLAM_A SINE Alu 0 133 1 2280 80 0 3 chr15 59843608 59843909 -41536612 - AluSg SINE Alu -10 300 1 252 280 138 19 chr15 59844560 59844828 -41535693 - L1ME4a LINE L1 -121 6000 5701 210 317 158 10 chr15 59845889 59845990 -41534531 + MIR SINE MIR 36 151 -57 287 228 38 13 chr15 59845994 59846073 -41534448 + L1M4 LINE L1 4730 4810 -1336 380 198 16 79 chr15 59846077 59846203 -41534318 + L1M4 LINE L1 4881 4998 -1148 2042 139 76 134 chr15 59846716 59847177 -41533344 - Tigger2 DNA MER2_type 0 2718 1 201 139 0 0 chr15 59847555 59847598 -41532923 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 908 160 77 0 chr15 59849706 59849875 -41530646 - MER5A DNA MER1_type -6 183 2 382 178 15 78 chr15 59850019 59850035 -41530486 + MER106B DNA MER1_type 30 45 -191 207 0 0 0 chr15 59850035 59850058 -41530463 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 382 178 15 78 chr15 59850058 59850232 -41530289 + MER106B DNA MER1_type 45 235 -1 275 310 30 50 chr15 59852332 59852532 -41527989 - MLT1L LTR MaLR -52 563 368 1246 198 54 0 chr15 59853986 59854264 -41526257 + MER33 DNA MER1_type 1 293 -31 756 188 147 0 chr15 59856141 59856311 -41524210 - MIR SINE MIR -52 210 16 371 314 74 11 chr15 59857840 59858015 -41522506 + MIR3 SINE MIR 16 201 -7 367 308 101 19 chr15 59858311 59858470 -41522051 - MIR SINE MIR -13 249 78 213 266 76 13 chr15 59858528 59858607 -41521914 - MIR SINE MIR -156 106 23 575 238 166 7 chr15 59860245 59860396 -41520125 + MIR3 SINE MIR 23 197 -11 1931 99 3 81 chr15 59860887 59861209 -41519312 + AluSx SINE Alu 1 297 -15 339 297 10 10 chr15 59862034 59862135 -41518386 + MIR SINE MIR 156 256 -6 546 303 22 32 chr15 59863215 59863400 -41517121 + MIR SINE MIR 80 262 0 180 297 188 0 chr15 59864204 59864268 -41516253 + L2 LINE L2 3186 3261 -11 940 267 23 23 chr15 59865609 59865867 -41514654 - MIR SINE MIR 0 262 5 862 66 0 0 chr15 59868753 59868859 -41511662 + AluSq SINE Alu 146 251 -62 254 261 54 63 chr15 59869075 59869186 -41511335 + MIR SINE MIR 153 262 0 580 279 176 46 chr15 59869386 59869777 -41510744 - L2 LINE L2 -5 3308 2867 441 138 52 15 chr15 59871618 59871660 -41508861 + L1M1 LINE L1 5677 5716 -450 3205 93 36 30 chr15 59871660 59872184 -41508337 - L1MA2 LINE L1 -1 7722 7196 441 138 52 15 chr15 59872184 59872242 -41508279 + L1M1 LINE L1 5716 5773 -393 210 37 0 0 chr15 59872251 59872278 -41508243 + (CA)n Simple_repeat Simple_repeat 2 28 0 271 71 24 24 chr15 59872293 59872335 -41508186 + L1M3 LINE L1 5677 5718 -616 3349 101 25 4 chr15 59872341 59872924 -41507597 - L1MA2 LINE L1 -576 7148 6547 * 7288 109 74 0 chr15 59872918 59874024 -41506497 - L1MA2 LINE L1 -4671 2894 1707 1339 181 0 0 chr15 59874157 59874389 -41506132 + AluJb SINE Alu 1 232 -80 1531 151 30 50 chr15 59875749 59876048 -41504473 + AluJo SINE Alu 1 293 -19 445 229 74 13 chr15 59877126 59877315 -41503206 - MIR SINE MIR -46 216 16 606 289 117 11 chr15 59878157 59878430 -41502091 - L1ME LINE L1 -302 5819 5518 350 107 93 27 chr15 59878990 59879065 -41501456 + MER53 DNA DNA 110 189 0 256 304 143 24 chr15 59880764 59880958 -41499563 - MIR SINE MIR -33 229 17 224 330 126 10 chr15 59881389 59881492 -41499029 + MIR SINE MIR 37 151 -57 1970 129 4 0 chr15 59881573 59881853 -41498668 + AluSx SINE Alu 2 328 0 415 0 0 0 chr15 59881853 59881899 -41498622 + (TAAA)n Simple_repeat Simple_repeat 3 160 0 1949 121 24 0 chr15 59883659 59883949 -41496572 - AluSq SINE Alu -16 297 1 498 17 0 0 chr15 59885019 59885078 -41495443 + (CA)n Simple_repeat Simple_repeat 1 59 0 190 324 19 38 chr15 59885235 59885340 -41495181 + L3 LINE CR1 118 220 -1357 343 233 35 0 chr15 59886461 59886547 -41493974 - L1M4 LINE L1 -2027 4119 4031 386 221 53 0 chr15 59886762 59886857 -41493664 + MER5B DNA MER1_type 1 100 -78 296 233 124 23 chr15 59886862 59886991 -41493530 - MIR SINE MIR -58 204 63 349 293 43 86 chr15 59887581 59887656 -41492865 - MIR SINE MIR -6 256 188 2005 125 30 0 chr15 59887656 59887951 -41492570 - AluSx SINE Alu -8 304 1 349 293 43 86 chr15 59887951 59888015 -41492506 - MIR SINE MIR -74 188 123 1651 160 7 20 chr15 59888669 59889001 -41491520 - AluJo SINE Alu 0 312 1 387 278 60 33 chr15 59889123 59889274 -41491247 - MIR3 SINE MIR -18 190 36 630 149 0 0 chr15 59892418 59892552 -41487969 + (G)n Simple_repeat Simple_repeat 1 134 0 251 297 126 27 chr15 59893115 59893226 -41487295 + MIR SINE MIR 137 258 -4 216 313 15 0 chr15 59893363 59893430 -41487091 - MIR SINE MIR -32 230 163 296 257 133 9 chr15 59893644 59893757 -41486764 + L1ME4a LINE L1 5798 5924 -197 879 105 0 23 chr15 59896492 59896625 -41483896 + AluSx SINE Alu 1 130 -182 322 215 76 99 chr15 59896632 59896804 -41483717 + L1MC5 LINE L1 7572 7739 -222 1030 132 42 0 chr15 59896805 59896972 -41483549 + AluSx SINE Alu 132 305 -7 221 315 157 0 chr15 59898702 59898791 -41481730 - MIR SINE MIR -3 259 157 241 297 102 25 chr15 59899714 59899832 -41480689 - L2 LINE L2 0 3272 3146 295 187 286 13 chr15 59899894 59899996 -41480525 + MER5A DNA MER1_type 31 165 -13 219 69 0 0 chr15 59899997 59900026 -41480495 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 3183 78 68 17 chr15 59900046 59900072 -41480449 - L1MA1 LINE L1 -1 6301 6278 213 0 81 0 chr15 59900072 59900109 -41480412 + (TA)n Simple_repeat Simple_repeat 1 40 0 3183 78 68 17 chr15 59900109 59900136 -41480385 - L1MA1 LINE L1 -24 6278 6254 2695 100 8 0 chr15 59900136 59900497 -41480024 - THE1B LTR MaLR 0 364 1 3183 78 68 17 chr15 59900497 59900915 -41479606 - L1MA1 LINE L1 -48 6254 5805 209 250 12 71 chr15 59902241 59902325 -41478196 + MIR3 SINE MIR 118 196 -12 37 23 0 0 chr15 59902378 59902422 -41478099 + AT_rich Low_complexity Low_complexity 1 44 0 472 284 60 83 chr15 59902892 59903110 -41477411 + MIR SINE MIR 30 242 -20 569 111 11 0 chr15 59903130 59903220 -41477301 + L1MB4 LINE L1 6082 6172 -8 280 203 36 11 chr15 59904048 59904136 -41476385 + L1MB4 LINE L1 6068 6179 0 473 204 174 141 chr15 59907619 59907987 -41472534 - L1ME4a LINE L1 -30 6091 5712 416 261 97 36 chr15 59908259 59908425 -41472096 + MIR SINE MIR 37 212 -50 230 306 149 8 chr15 59908543 59908664 -41471857 + MIR SINE MIR 31 168 -94 229 289 107 0 chr15 59909142 59909263 -41471258 - L2 LINE L2 -1 3271 3138 648 285 108 20 chr15 59909952 59910343 -41470178 - MLT1J LTR MaLR -31 480 32 245 292 69 15 chr15 59910735 59910865 -41469656 - MER103 DNA DNA -7 159 23 272 344 56 36 chr15 59910982 59911177 -41469344 + MIR SINE MIR 61 259 -3 198 0 0 0 chr15 59912886 59912908 -41467613 + (TC)n Simple_repeat Simple_repeat 2 23 0 182 238 95 0 chr15 59914719 59914761 -41465760 - L2 LINE L2 -71 3201 3156 560 217 125 38 chr15 59917094 59917278 -41463243 - MIR SINE MIR -5 257 58 274 254 51 0 chr15 59917295 59917354 -41463167 - MIR SINE MIR -170 92 31 376 250 26 70 chr15 59919075 59919231 -41461290 + MER103 DNA DNA 2 150 -16 186 375 0 0 chr15 59919434 59919498 -41461023 + L2 LINE L2 3239 3302 -11 1947 131 3 0 chr15 59919860 59920151 -41460370 - AluSx SINE Alu -20 292 1 490 229 29 9 chr15 59920542 59920647 -41459874 + MLT1L LTR MaLR 145 251 -364 23 68 0 0 chr15 59920916 59920960 -41459561 + AT_rich Low_complexity Low_complexity 1 44 0 192 340 0 0 chr15 59921342 59921392 -41459129 + L2 LINE L2 3211 3260 -12 196 263 237 0 chr15 59922040 59922116 -41458405 + MIR SINE MIR 20 113 -95 504 265 141 64 chr15 59922281 59922367 -41458154 - MIR SINE MIR -10 252 174 2394 71 0 3 chr15 59922367 59922675 -41457846 - AluY SINE Alu -3 308 2 504 265 141 64 chr15 59922675 59922822 -41457699 - MIR SINE MIR -88 174 1 279 366 35 21 chr15 59922828 59922970 -41457551 - MIR SINE MIR -71 191 48 830 173 100 39 chr15 59923117 59923377 -41457144 - LTR37B LTR ERV1 0 468 193 1932 147 3 10 chr15 59923891 59924205 -41456316 - AluJb SINE Alu 0 312 1 883 203 14 59 chr15 59924476 59924698 -41455823 - MER58C DNA MER1_type 0 215 4 314 226 87 26 chr15 59924729 59924844 -41455677 + MIR SINE MIR 20 141 -121 204 313 30 0 chr15 59925550 59925617 -41454904 - MIR SINE MIR -123 139 71 1102 176 19 24 chr15 59925690 59925900 -41454621 + MER6B DNA MER2_type 2 210 0 2102 116 0 3 chr15 59926087 59926389 -41454132 + AluSc SINE Alu 1 301 -8 288 284 68 68 chr15 59926761 59926923 -41453598 - MIR SINE MIR 0 262 101 531 247 60 22 chr15 59927979 59928161 -41452360 - MER5A DNA MER1_type 0 189 1 198 311 76 30 chr15 59928393 59928525 -41451996 - MER5B DNA MER1_type -11 167 30 180 226 132 0 chr15 59929140 59929193 -41451328 + MIR SINE MIR 183 242 -20 237 266 76 0 chr15 59929200 59929279 -41451242 - L2 LINE L2 -35 3237 3153 12697 68 12 1 chr15 59929981 59932411 -41448110 + L1PA6 LINE L1 3703 6154 0 192 189 0 0 chr15 59932936 59932973 -41447548 + MIR SINE MIR 202 238 -24 217 250 78 0 chr15 59932993 59933057 -41447464 + L2 LINE L2 3229 3297 -16 4135 243 15 7 chr15 59933081 59934169 -41446352 + L1PA15 LINE L1 2087 3182 -2964 3251 199 15 6 chr15 59934152 59934825 -41445696 + L1PA15 LINE L1 4454 5132 -1014 * 1081 187 10 0 chr15 59934825 59935023 -41445498 + AluJb SINE Alu 84 283 -29 5121 130 61 7 chr15 59935023 59936016 -41444505 + L1PA15 LINE L1 5121 6165 0 2013 112 0 3 chr15 59936258 59936567 -41443954 + AluSq SINE Alu 1 308 0 224 194 0 0 chr15 59936640 59936676 -41443845 - L2 LINE L2 -4 3268 3233 354 291 67 15 chr15 59936699 59936833 -41443688 + MIR3 SINE MIR 20 160 -48 340 323 0 0 chr15 59937317 59937410 -41443111 + MIR SINE MIR 38 130 -78 436 325 38 13 chr15 59937790 59937947 -41442574 + MIR SINE MIR 99 259 -3 192 261 123 0 chr15 59937961 59938026 -41442495 + L2 LINE L2 3241 3313 0 953 178 29 0 chr15 59938046 59938220 -41442301 - MIR SINE MIR -43 219 41 1801 162 24 87 chr15 59938473 59938887 -41441634 + MLT1B LTR MaLR 3 390 0 180 0 0 0 chr15 59939112 59939132 -41441389 + (A)n Simple_repeat Simple_repeat 1 20 0 1786 150 7 0 chr15 59939572 59939866 -41440655 + AluJo SINE Alu 1 296 -16 1798 118 4 7 chr15 59940394 59940674 -41439847 + AluSx SINE Alu 34 312 0 41 58 0 0 chr15 59940853 59940922 -41439599 + AT_rich Low_complexity Low_complexity 1 69 0 1685 177 17 169 chr15 59941126 59941236 -41439285 + MLT1D LTR MaLR 1 126 -379 4133 118 8 12 chr15 59941236 59941883 -41438638 - L1PA14 LINE L1 0 6161 5518 1685 177 17 169 chr15 59941883 59942365 -41438156 + MLT1D LTR MaLR 126 503 -2 1717 159 10 3 chr15 59942608 59942904 -41437617 - AluJo SINE Alu -14 298 1 781 148 8 0 chr15 59943310 59943438 -41437083 - FLAM_C SINE Alu -4 129 1 2156 110 0 3 chr15 59943605 59943906 -41436615 + AluSg SINE Alu 1 300 -10 329 160 40 80 chr15 59944434 59944509 -41436012 + LTR33A LTR ERVL 444 515 -8 352 183 235 17 chr15 59945056 59945171 -41435350 - Charlie1 DNA MER1_type 0 2761 2622 * 778 185 210 0 chr15 59945154 59945354 -41435167 - Charlie1 DNA MER1_type -2519 242 1 451 250 115 26 chr15 59945376 59945532 -41434989 - MIR SINE MIR -67 195 26 377 271 77 40 chr15 59946669 59946836 -41433685 - MIR3 SINE MIR -51 157 16 33 0 0 0 chr15 59947045 59947078 -41433443 + AT_rich Low_complexity Low_complexity 1 33 0 327 250 39 47 chr15 59948670 59948798 -41431723 - LTR67 LTR ERVL -3 554 428 210 290 16 32 chr15 59949404 59949466 -41431055 - MIR SINE MIR -4 258 198 338 221 93 0 chr15 59949504 59949590 -41430931 + L1ME LINE L1 5710 5803 -367 2085 215 58 7 chr15 59949596 59950043 -41430478 + Charlie1a DNA MER1_type 1 470 -985 365 239 22 33 chr15 59950084 59950176 -41430345 - L1ME LINE L1 -526 5638 5548 238 241 0 0 chr15 59950377 59950431 -41430090 - HsTC2 DNA Tc2 0 1898 1845 1713 124 102 42 chr15 59950497 59950851 -41429670 - THE1C LTR MaLR 0 375 1 684 291 140 4 chr15 59950985 59951250 -41429271 - HsTC2 DNA Tc2 -1061 837 537 390 275 14 36 chr15 59951249 59951387 -41429134 - HsTC2 DNA Tc2 -1746 152 18 * 216 200 0 0 chr15 59951421 59951466 -41429055 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 634 259 96 59 chr15 59951498 59951737 -41428784 - MIR SINE MIR -5 257 10 2293 101 0 0 chr15 59952197 59952505 -41428016 + AluSc SINE Alu 1 308 -1 2466 190 62 44 chr15 59953229 59954014 -41426507 - L1ME LINE L1 -614 5552 4751 1141 160 39 74 chr15 59954027 59954283 -41426238 + MER34B LTR ERV1 17 263 -302 404 299 57 13 chr15 59954285 59954442 -41426079 - MIR SINE MIR -97 165 2 519 230 39 45 chr15 59954463 59954641 -41425880 + MER5B DNA MER1_type 2 178 0 310 333 51 14 chr15 59955475 59955613 -41424908 - MIR SINE MIR -51 211 69 732 167 0 23 chr15 59955734 59955866 -41424655 - FLAM_A SINE Alu -4 129 1 2644 111 72 0 chr15 59955935 59956350 -41424171 + MER65A LTR ERV1 1 445 0 280 242 11 22 chr15 59956627 59956718 -41423803 - L1MC4 LINE L1 -1339 6703 6614 2183 106 7 0 chr15 59956723 59957024 -41423497 - AluSx SINE Alu -9 303 1 298 277 30 10 chr15 59958401 59958502 -41422019 - MIR SINE MIR -81 127 25 536 291 102 46 chr15 59958516 59958839 -41421682 + L2 LINE L2 2972 3312 -1 2428 69 0 22 chr15 59958978 59959296 -41421225 - AluY SINE Alu 0 311 1 326 209 229 0 chr15 59959640 59959745 -41420776 - MIR3 SINE MIR -72 136 8 400 172 0 0 chr15 59959791 59959855 -41420666 + MADE1 DNA Mariner 1 64 -16 548 275 70 50 chr15 59960169 59960369 -41420152 + MIR SINE MIR 8 211 -51 335 307 129 43 chr15 59960408 59960571 -41419950 + L3 LINE CR1 1384 1560 -17 264 263 53 18 chr15 59960590 59960704 -41419817 - L2 LINE L2 -244 3028 2911 2164 96 0 3 chr15 59961156 59961449 -41419072 - AluSc SINE Alu -17 292 1 329 278 11 44 chr15 59962163 59962253 -41418268 + L2 LINE L2 3183 3269 -3 264 227 45 0 chr15 59963726 59963792 -41416729 - MIR SINE MIR -14 248 180 355 250 26 20 chr15 59963858 59964010 -41416511 - L1MEc LINE L1 -3129 3086 2934 225 0 0 0 chr15 59964244 59964269 -41416252 + (T)n Simple_repeat Simple_repeat 1 25 0 725 194 18 67 chr15 59964405 59964502 -41416019 - L1MEc LINE L1 -3682 2533 2433 2079 133 146 8 chr15 59964502 59964878 -41415643 - MSTA LTR MaLR 0 428 1 725 194 18 67 chr15 59964878 59964922 -41415599 - L1MEc LINE L1 -3782 2433 2388 1660 215 60 58 chr15 59964922 59965225 -41415296 - MLT1C LTR MaLR 0 467 161 1997 116 3 3 chr15 59965225 59965518 -41415003 + AluSg SINE Alu 1 293 -17 1660 215 60 58 chr15 59965518 59965680 -41414841 - MLT1C LTR MaLR -306 161 1 725 194 18 67 chr15 59965680 59965930 -41414591 - L1MEc LINE L1 -3827 2388 2157 264 293 45 38 chr15 59965935 59965951 -41414570 - LTR16C LTR ERVL 0 491 477 279 0 0 0 chr15 59965951 59965982 -41414539 + (CA)n Simple_repeat Simple_repeat 2 32 0 264 293 45 38 chr15 59965982 59966098 -41414423 - LTR16C LTR ERVL -14 477 358 684 262 38 6 chr15 59966321 59966504 -41414017 - MIR SINE MIR -72 190 2 518 301 0 0 chr15 59968086 59968262 -41412259 + (TG)n Simple_repeat Simple_repeat 2 177 0 200 236 0 28 chr15 59968304 59968376 -41412145 + (TCTG)n Simple_repeat Simple_repeat 4 73 0 560 277 51 19 chr15 59968887 59969117 -41411404 - MIR SINE MIR -18 244 3 205 80 0 0 chr15 59969163 59969188 -41411333 + (CA)n Simple_repeat Simple_repeat 1 25 0 609 270 135 26 chr15 59969357 59969587 -41410934 + MIR SINE MIR 8 262 0 784 309 8 4 chr15 59970672 59970908 -41409613 - MIR SINE MIR -18 244 8 792 147 67 13 chr15 59971054 59971204 -41409317 + MER65A LTR ERV1 129 286 -159 186 167 0 0 chr15 59972157 59972193 -41408328 + GA-rich Low_complexity Low_complexity 2 37 0 204 205 0 0 chr15 59974187 59974226 -41406295 + (TTGG)n Simple_repeat Simple_repeat 1 39 0 499 261 176 0 chr15 59974454 59974630 -41405891 + MIR SINE MIR 56 262 0 329 264 64 18 chr15 59974653 59974763 -41405758 - L3 LINE CR1 -113 1464 1350 992 156 131 10 chr15 59974775 59974974 -41405547 - MIR SINE MIR -31 231 9 313 327 28 37 chr15 59975094 59975201 -41405320 - L2 LINE L2 -1 3271 3166 192 148 82 131 chr15 59975200 59975261 -41405260 + L2 LINE L2 3236 3293 -20 * 330 306 183 16 chr15 59975977 59976229 -41404292 + L2 LINE L2 2831 3124 -189 1761 199 45 14 chr15 59976233 59976656 -41403865 - LTR37B LTR ERV1 0 468 33 449 267 72 56 chr15 59976658 59976853 -41403668 + L2 LINE L2 3115 3312 -1 1155 128 95 5 chr15 59976886 59977097 -41403424 + L1MB3 LINE L1 5953 6182 -1 428 299 104 79 chr15 59977110 59977351 -41403170 - MIR SINE MIR -1 261 15 290 271 0 0 chr15 59977392 59977462 -41403059 - L2 LINE L2 -185 3087 3018 3724 142 4 0 chr15 59978220 59978768 -41401753 + MER41D LTR ERV1 1 550 -7 1959 99 0 0 chr15 59979232 59979495 -41401026 + AluSx SINE Alu 40 302 -10 1237 177 45 0 chr15 59979497 59979740 -41400781 + MER45B DNA AcHobo 787 1040 0 2101 141 39 30 chr15 59980173 59980534 -41399987 + THE1B LTR MaLR 1 364 0 278 260 130 0 chr15 59980788 59980888 -41399633 - MIR SINE MIR -112 150 38 270 0 0 0 chr15 59981781 59981811 -41398710 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 366 23 0 0 chr15 59981810 59981853 -41398668 + (TG)n Simple_repeat Simple_repeat 2 44 0 302 353 72 12 chr15 59981872 59982039 -41398482 - MIR SINE MIR -64 198 22 451 284 35 0 chr15 59982205 59982321 -41398200 + L2 LINE L2 3194 3313 0 310 259 187 64 chr15 59982441 59982613 -41397908 - MIR SINE MIR -66 142 9 260 167 33 0 chr15 59982817 59982877 -41397644 + MER4-int LTR ERV1 1112 1173 -5425 3964 138 65 5 chr15 59984347 59985006 -41395515 - MER4D LTR ERV1 0 903 205 2039 119 0 10 chr15 59985288 59985583 -41394938 + AluSc SINE Alu 1 292 -17 29 28 0 0 chr15 59986299 59986335 -41394186 + AT_rich Low_complexity Low_complexity 1 36 0 273 343 19 19 chr15 59986361 59986466 -41394055 + MIR3 SINE MIR 1 105 -103 1704 163 27 24 chr15 59986500 59986795 -41393726 - AluJo SINE Alu -16 296 1 207 0 0 0 chr15 59987611 59987634 -41392887 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2090 59 0 0 chr15 59987750 59988004 -41392517 - L1PA8 LINE L1 -7 6165 5912 408 88 0 0 chr15 59988265 59988322 -41392199 + (CA)n Simple_repeat Simple_repeat 2 58 0 293 225 271 23 chr15 59988625 59988754 -41391767 + MIR SINE MIR 9 169 -93 1611 226 75 25 chr15 59989052 59989490 -41391031 + MLT1C LTR MaLR 6 465 -2 211 314 109 15 chr15 59989492 59989629 -41390892 - MIR3 SINE MIR -55 153 4 469 264 28 33 chr15 59990058 59990240 -41390281 + L1MB8 LINE L1 5998 6178 0 314 308 76 23 chr15 59990240 59990412 -41390109 + L1ME LINE L1 1880 2060 -4480 1598 296 88 25 chr15 59990425 59991391 -41389130 + L1ME LINE L1 4355 5381 -1159 360 0 0 0 chr15 59991453 59991493 -41389028 + (CA)n Simple_repeat Simple_repeat 2 41 0 491 178 141 87 chr15 59991493 59991525 -41388996 + L1MD2 LINE L1 6155 6184 -175 2013 76 7 22 chr15 59991525 59991800 -41388721 + AluY SINE Alu 39 309 -2 491 178 141 87 chr15 59991800 59991952 -41388569 + L1MD2 LINE L1 6184 6349 -10 * 566 263 131 41 chr15 59991951 59992519 -41388002 + L1ME LINE L1 5404 6002 -562 397 132 53 0 chr15 59992621 59992697 -41387824 - L1MB7 LINE L1 -236 5948 5869 2021 152 88 53 chr15 59992703 59993132 -41387389 - L1MB7 LINE L1 -380 5804 5326 1680 167 13 33 chr15 59993132 59993431 -41387090 - AluJo SINE Alu -15 297 5 2021 152 88 53 chr15 59993431 59993554 -41386967 - L1MB7 LINE L1 -858 5326 5209 632 239 132 12 chr15 59993650 59993893 -41386628 - MLT1J LTR MaLR -171 340 69 206 275 14 29 chr15 59993915 59993984 -41386537 - MIR SINE MIR -174 88 21 2203 109 27 0 chr15 59994079 59994372 -41386149 - AluSx SINE Alu -11 301 1 2153 121 13 3 chr15 59995402 59995707 -41384814 - AluSg SINE Alu -2 308 1 583 270 45 40 chr15 59995708 59995930 -41384591 - MARNA DNA Mariner -192 394 172 197 323 0 0 chr15 59996008 59996070 -41384451 + L2 LINE L2 3231 3292 -21 198 71 0 0 chr15 59996430 59996458 -41384063 + (TG)n Simple_repeat Simple_repeat 2 29 0 2395 90 0 0 chr15 59996505 59996806 -41383715 + AluSc SINE Alu 1 301 -8 187 203 95 54 chr15 59999384 59999458 -41381063 + L2 LINE L2 3223 3299 -14 740 158 17 0 chr15 59999991 60000111 -41380410 - MLT1I LTR MaLR 0 409 288 538 225 118 32 chr15 60000162 60000349 -41380172 - MLT1I LTR MaLR -206 203 1 1424 172 157 3 chr15 60001107 60001450 -41379071 - L1M4 LINE L1 -1443 4703 4308 1449 149 9 0 chr15 60001476 60001697 -41378824 - AluSg/x SINE Alu -3 307 85 3753 228 53 20 chr15 60001711 60002092 -41378429 - L1M4 LINE L1 -1828 4318 3951 2337 183 50 60 chr15 60002092 60002710 -41377811 - LTR9 LTR ERV1 0 612 1 3753 228 53 20 chr15 60002710 60003406 -41377115 - L1M4 LINE L1 -2195 3951 3206 185 250 100 75 chr15 60003509 60003629 -41376892 - L2 LINE L2 -4 3268 3146 204 253 71 50 chr15 60003698 60003797 -41376724 + MER91C DNA MER1_type 4 104 -36 1381 112 0 54 chr15 60003836 60004059 -41376462 + MER4D LTR ERV1 1 211 -692 1702 104 9 4 chr15 60004059 60004290 -41376231 + AluSc SINE Alu 1 232 -77 300 36 18 71 chr15 60004424 60004480 -41376041 + L1PA4 LINE L1 6103 6155 0 1560 169 54 37 chr15 60005706 60006001 -41374520 - AluJo SINE Alu -12 300 1 220 279 44 15 chr15 60007021 60007089 -41373432 + L2 LINE L2 3203 3272 0 294 279 0 0 chr15 60008251 60008319 -41372202 - L2 LINE L2 -8 3305 3238 786 270 54 33 chr15 60008658 60009126 -41371395 + LTR33 LTR ERVL 13 520 -1 1196 169 151 11 chr15 60009220 60009504 -41371017 + L1MB7 LINE L1 5852 6175 -9 559 269 6 23 chr15 60009652 60009823 -41370698 - MIR SINE MIR 0 262 95 2284 115 3 0 chr15 60009888 60010200 -41370321 - AluSp SINE Alu 0 313 1 460 228 199 29 chr15 60010209 60010455 -41370066 - L1ME LINE L1 -303 5818 5531 198 0 0 0 chr15 60011211 60011233 -41369288 + (CACAG)n Simple_repeat Simple_repeat 3 24 0 2630 94 11 3 chr15 60011264 60011625 -41368896 - THE1B LTR MaLR 0 364 1 437 278 53 24 chr15 60011711 60011880 -41368641 - MIR3 SINE MIR -14 194 21 7129 34 0 0 chr15 60012445 60013348 -41367173 - L1PA3 LINE L1 -65 6090 5188 194 224 82 0 chr15 60013489 60013538 -41366983 - L2 LINE L2 -15 3257 3205 2578 77 0 0 chr15 60013719 60014030 -41366491 + AluY SINE Alu 1 311 0 1132 116 70 41 chr15 60014276 60014444 -41366077 - L1MA5 LINE L1 -5 6295 6116 1864 130 11 0 chr15 60014444 60014706 -41365815 + AluJb SINE Alu 27 291 -21 1132 116 70 41 chr15 60014706 60014779 -41365742 - L1MA5 LINE L1 -184 6116 6047 205 317 85 5 chr15 60015231 60015335 -41365186 - MIR SINE MIR -65 143 38 1975 221 19 52 chr15 60015419 60015952 -41364569 - L1ME3A LINE L1 -70 6100 5586 315 256 56 44 chr15 60016324 60016414 -41364107 + L2 LINE L2 3168 3258 -14 291 301 122 8 chr15 60017535 60017658 -41362863 - MIR SINE MIR -6 256 120 587 328 20 0 chr15 60017680 60017881 -41362640 + MER115 DNA AcHobo 1 205 -488 631 200 154 15 chr15 60018481 60018676 -41361845 + MIR SINE MIR 35 256 -6 4214 162 23 67 chr15 60018837 60019120 -41361401 - L1MB7 LINE L1 0 6184 5890 2113 114 24 0 chr15 60019120 60019410 -41361111 + AluSx SINE Alu 1 297 -15 4214 162 23 67 chr15 60019410 60020144 -41360377 - L1MB7 LINE L1 -294 5890 5208 1643 138 4 4 chr15 60020320 60020567 -41359954 + AluJb SINE Alu 65 311 -1 1066 240 131 3 chr15 60020667 60020950 -41359571 + MLT1F LTR MaLR 6 324 -218 1066 198 58 10 chr15 60021348 60021555 -41358966 + MER58A DNA MER1_type 1 217 -7 859 185 32 13 chr15 60021772 60021929 -41358592 - MLT1F LTR MaLR -2 540 381 254 365 16 8 chr15 60021968 60022094 -41358427 + MIR3 SINE MIR 9 135 -73 432 252 143 0 chr15 60022141 60022288 -41358233 + MIR SINE MIR 95 262 0 192 250 18 0 chr15 60022574 60022630 -41357891 - MIR3 SINE MIR 0 208 152 183 229 0 42 chr15 60022601 60022649 -41357872 - L3b LINE CR1 -24 1559 1514 * 288 349 187 12 chr15 60022863 60023717 -41356804 + L2 LINE L2 97 1100 -2214 3523 134 4 9 chr15 60024803 60025333 -41355188 - MER1A DNA MER1_type 0 527 1 286 321 124 22 chr15 60025617 60025754 -41354767 - L2 LINE L2 0 3272 3122 1391 187 181 19 chr15 60026968 60027343 -41353178 - MER63B DNA MER1_type 0 436 1 672 253 45 10 chr15 60028090 60028292 -41352229 + MIR SINE MIR 13 221 -41 236 230 95 14 chr15 60028831 60028905 -41351616 + LTR67 LTR ERVL 3 82 -475 333 205 43 60 chr15 60028923 60029008 -41351513 + LTR67 LTR ERVL 433 517 -40 2147 103 0 51 chr15 60029008 60029319 -41351202 + AluSx SINE Alu 17 311 -1 333 205 43 60 chr15 60029319 60029350 -41351171 + LTR67 LTR ERVL 517 547 -10 537 292 115 10 chr15 60029449 60029658 -41350863 + MIR SINE MIR 22 252 -10 621 251 18 6 chr15 60031504 60031671 -41348850 - MIR SINE MIR -76 186 18 21 0 0 0 chr15 60031803 60031824 -41348697 + AT_rich Low_complexity Low_complexity 1 21 0 3366 234 25 20 chr15 60032043 60032889 -41347632 + Zaphod DNA AcHobo 14 863 -3168 1580 193 37 11 chr15 60032931 60033283 -41347238 + MLT1A1 LTR MaLR 5 365 0 349 255 11 11 chr15 60033950 60034044 -41346477 + Zaphod DNA AcHobo 14 107 -3924 422 247 13 100 chr15 60034224 60034376 -41346145 - MIR3 SINE MIR -42 166 30 887 201 6 12 chr15 60034790 60034959 -41345562 - FRAM SINE Alu -8 168 1 570 222 129 16 chr15 60035216 60035410 -41345111 - MER69 DNA AcHobo -727 1799 1584 1266 185 0 5 chr15 60035461 60035683 -41344838 + AluJo SINE Alu 87 307 -5 231 292 32 0 chr15 60035935 60036017 -41344504 - MER69 DNA AcHobo -87 2439 5 413 222 12 0 chr15 60036365 60036446 -41344075 - L2 LINE L2 -2 3311 3230 1881 216 75 37 chr15 60036515 60037033 -41343488 + MLT1F LTR MaLR 5 542 0 348 260 26 0 chr15 60039432 60039509 -41341012 - MIR SINE MIR -70 192 114 345 100 0 0 chr15 60039631 60039681 -41340840 + (CA)n Simple_repeat Simple_repeat 2 51 0 239 326 90 45 chr15 60040008 60040253 -41340268 + L2 LINE L2 2829 3084 -188 314 274 26 26 chr15 60040505 60040618 -41339903 + MIR SINE MIR 96 208 -54 696 235 131 5 chr15 60041742 60041963 -41338558 + L1ME3A LINE L1 5920 6168 -2 615 294 123 0 chr15 60042331 60042535 -41337986 - MIR SINE MIR -16 246 18 312 263 40 0 chr15 60042777 60042853 -41337668 - MIR SINE MIR -67 195 117 24 32 0 0 chr15 60043892 60043923 -41336598 + AT_rich Low_complexity Low_complexity 1 31 0 346 289 120 35 chr15 60044994 60045072 -41335449 + MIR SINE MIR 25 95 -167 1816 123 53 23 chr15 60045072 60045372 -41335149 - AluJb SINE Alu -3 309 1 346 289 120 35 chr15 60045372 60045435 -41335086 + MIR SINE MIR 95 178 -84 222 122 54 27 chr15 60046018 60046092 -41334429 + (TCTCTG)n Simple_repeat Simple_repeat 6 81 0 223 293 131 20 chr15 60046555 60046654 -41333867 + L2 LINE L2 3188 3297 -16 408 305 50 65 chr15 60048262 60048583 -41331938 - L2 LINE L2 -5 3267 2952 1288 240 58 54 chr15 60048723 60049337 -41331184 + L2 LINE L2 2698 3313 0 215 281 85 49 chr15 60049332 60049414 -41331107 - L2 LINE L2 -548 2766 2682 * 314 263 31 38 chr15 60049443 60049603 -41330918 + MER112 DNA MER1_type 14 172 -88 627 197 0 0 chr15 60049615 60049793 -41330728 + (CTATT)n Simple_repeat Simple_repeat 1 178 0 2005 145 30 0 chr15 60049873 60050176 -41330345 + AluSx SINE Alu 1 312 0 2421 110 19 19 chr15 60050676 60051040 -41329481 - THE1B LTR MaLR 0 364 1 193 310 70 20 chr15 60051643 60051679 -41328842 + MIR SINE MIR 16 56 -152 593 283 90 11 chr15 60051679 60051856 -41328665 - MER91A DNA MER1_type -3 193 3 280 236 146 0 chr15 60052012 60052101 -41328420 - L2 LINE L2 -204 3068 2967 510 229 153 0 chr15 60052867 60052999 -41327522 + MER5A DNA MER1_type 4 159 -30 525 307 116 17 chr15 60053039 60053446 -41327075 + L2 LINE L2 2026 2472 -842 2062 155 62 23 chr15 60053525 60053912 -41326609 + MSTA LTR MaLR 1 402 -26 451 230 48 113 chr15 60054268 60054498 -41326023 + L2 LINE L2 3092 3306 -7 460 256 216 88 chr15 60054559 60054666 -41325855 - L2 LINE L2 -453 2861 2769 1905 125 47 0 chr15 60054666 60054945 -41325576 + AluJb SINE Alu 1 292 -20 460 256 216 88 chr15 60054945 60055314 -41325207 - L2 LINE L2 -545 2769 2324 448 343 105 0 chr15 60056863 60057035 -41323486 - MIR SINE MIR -52 210 21 412 366 51 0 chr15 60057702 60057877 -41322644 - MIR SINE MIR -28 234 51 378 236 19 9 chr15 60058094 60058210 -41322311 + L1ME3A LINE L1 5664 5782 -380 856 129 0 0 chr15 60058210 60058326 -41322195 + AluSq/x SINE Alu 1 116 -196 2789 13 0 0 chr15 60059821 60060122 -41320399 - AluYa5 SINE Alu -10 301 1 310 231 93 9 chr15 60060153 60060261 -41320260 + L1ME3A LINE L1 5768 5884 -286 2177 114 58 19 chr15 60060282 60060643 -41319878 - THE1C LTR MaLR 0 375 1 2290 106 10 0 chr15 60061304 60061605 -41318916 + AluSx SINE Alu 1 304 -8 1006 163 59 35 chr15 60062190 60062393 -41318128 + MER3 DNA MER1_type 2 209 0 272 137 20 0 chr15 60062870 60062921 -41317600 + CT-rich Low_complexity Low_complexity 3 54 0 250 348 12 43 chr15 60063091 60063255 -41317266 - MIR3 SINE MIR -3 205 47 556 189 197 0 chr15 60063521 60063648 -41316873 - MER5A DNA MER1_type -7 182 31 1051 242 67 78 chr15 60063705 60064156 -41316365 - LTR16A1 LTR ERVL -6 451 6 1850 143 45 3 chr15 60064353 60064640 -41315881 - AluJb SINE Alu -13 299 1 667 179 51 39 chr15 60065521 60065677 -41314844 - MER5B DNA MER1_type -4 174 17 181 140 0 40 chr15 60065742 60065752 -41314769 + (GGAA)n Simple_repeat Simple_repeat 1 10 -38 2290 109 3 3 chr15 60065752 60066054 -41314467 + AluSx SINE Alu 1 302 -10 181 140 0 40 chr15 60066054 60066093 -41314428 + (GGAA)n Simple_repeat Simple_repeat 10 48 0 186 133 0 0 chr15 60066127 60066157 -41314364 + (AGGGGG)n Simple_repeat Simple_repeat 6 35 0 180 0 0 0 chr15 60066469 60066489 -41314032 + (TTCCC)n Simple_repeat Simple_repeat 5 24 0 253 233 71 117 chr15 60067807 60068159 -41312362 + L2 LINE L2 2937 3272 0 243 231 31 0 chr15 60068238 60068303 -41312218 - MER69 DNA AcHobo 0 2526 2460 771 221 89 47 chr15 60068766 60069024 -41311497 - L1MEc LINE L1 -5993 403 135 300 214 14 29 chr15 60069038 60069108 -41311413 - L1MEc LINE L1 -6293 103 35 1472 233 96 39 chr15 60069110 60069630 -41310891 - Charlie1a DNA MER1_type -888 567 18 372 238 0 12 chr15 60069665 60069745 -41310776 - AluJ/FLAM SINE Alu -223 79 1 22 0 0 0 chr15 60069960 60069982 -41310539 + AT_rich Low_complexity Low_complexity 1 22 0 2320 82 0 11 chr15 60070395 60070700 -41309821 - AluSc SINE Alu 0 302 1 758 250 22 0 chr15 60070841 60071021 -41309500 + MIR SINE MIR 47 230 -32 411 217 124 134 chr15 60071090 60071307 -41309214 + MER58C DNA MER1_type 1 215 0 489 310 75 25 chr15 60072184 60072384 -41308137 - MIR SINE MIR -30 232 23 1272 93 6 0 chr15 60073302 60073464 -41307057 - AluSq SINE Alu -16 297 135 316 271 109 30 chr15 60074631 60074807 -41305714 - HAL1b LINE L1 -1 6120 1187 554 197 7 0 chr15 60074866 60075008 -41305513 + (GTCTG)n Simple_repeat Simple_repeat 4 146 0 370 323 0 0 chr15 60075111 60075235 -41305286 - L1MC4a LINE L1 -1899 5909 5786 642 311 40 14 chr15 60075388 60075461 -41305060 - L1MC4a LINE L1 -1902 4244 4174 1765 157 74 3 chr15 60075461 60075798 -41304723 - MER46B DNA MER2_type 0 236 1 642 311 40 14 chr15 60075798 60076094 -41304427 - L1MC4a LINE L1 -1972 4174 3865 1062 62 55 0 chr15 60076109 60076237 -41304284 - AluSg SINE Alu -129 181 47 342 311 62 36 chr15 60076320 60076513 -41304008 - L1MC4a LINE L1 -2743 3403 3206 418 293 127 0 chr15 60076756 60076913 -41303608 + MIR SINE MIR 86 262 0 213 39 0 0 chr15 60077646 60077672 -41302849 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 271 234 41 47 chr15 60077674 60077776 -41302745 - MIR SINE MIR -102 106 3 263 235 0 0 chr15 60077839 60077890 -41302631 - L2 LINE L2 0 3313 3263 191 265 157 12 chr15 60078233 60078316 -41302205 + L2 LINE L2 3179 3273 -40 425 236 82 60 chr15 60080024 60080186 -41300335 + MIR SINE MIR 34 198 -63 2350 98 10 0 chr15 60080186 60080491 -41300030 + AluSx SINE Alu 1 308 -4 201 255 0 0 chr15 60080621 60080668 -41299853 + (CTA)n Simple_repeat Simple_repeat 3 49 0 746 164 23 23 chr15 60080747 60080875 -41299646 - FLAM_C SINE Alu -10 133 6 603 236 21 37 chr15 60081102 60081299 -41299222 + MIR SINE MIR 68 262 0 321 307 20 10 chr15 60081299 60081400 -41299121 - L1MC4 LINE L1 -1341 6701 6600 284 169 58 17 chr15 60081407 60081579 -41298942 + (TA)n Simple_repeat Simple_repeat 2 180 0 305 330 46 52 chr15 60082266 60082351 -41298170 + MIR SINE MIR 20 104 -158 594 51 71 20 chr15 60082351 60082449 -41298072 + L1MA3 LINE L1 6203 6305 0 305 330 46 52 chr15 60082449 60082536 -41297985 + MIR SINE MIR 104 191 -71 329 249 83 101 chr15 60082636 60082755 -41297766 + MIR SINE MIR 36 99 -109 1563 212 10 3 chr15 60082755 60083052 -41297469 + AluJo SINE Alu 2 300 -12 329 249 83 101 chr15 60083052 60083101 -41297420 + MIR SINE MIR 99 147 -61 363 240 100 0 chr15 60084492 60084592 -41295929 - L2 LINE L2 -4 3309 3200 2024 226 44 12 chr15 60085166 60085684 -41294837 - MLT1F LTR MaLR -6 536 2 249 226 16 0 chr15 60085900 60085962 -41294559 - L1ME4a LINE L1 -99 6022 5960 1334 347 123 14 chr15 60085962 60086882 -41293639 + L2 LINE L2 1640 2659 -655 2208 83 3 0 chr15 60087474 60087762 -41292759 - AluSc SINE Alu -4 305 17 314 331 25 12 chr15 60087952 60088115 -41292406 + MIR SINE MIR 98 262 0 1948 195 21 66 chr15 60089171 60089214 -41291307 + Charlie4a DNA MER1_type 17 60 -1901 3034 114 7 0 chr15 60089214 60089645 -41290876 + MER57B LTR ERV1 1 434 0 1948 195 21 66 chr15 60089645 60090113 -41290408 + Charlie4a DNA MER1_type 60 505 -3 263 254 32 87 chr15 60090186 60090312 -41290209 + MER117 DNA MER1_type 75 193 -4 1081 165 10 31 chr15 60090327 60090521 -41290000 + MER3 DNA MER1_type 12 201 -8 281 284 14 135 chr15 60091602 60091673 -41288848 + MER5A DNA MER1_type 66 114 -75 1902 123 0 4 chr15 60091673 60091980 -41288541 - AluSx SINE Alu 0 317 12 281 284 14 135 chr15 60091980 60092048 -41288473 + MER5A DNA MER1_type 114 189 0 401 267 293 0 chr15 60092174 60092365 -41288156 - MIR SINE MIR 0 262 16 658 184 0 0 chr15 60092365 60092474 -41288047 + MER81 DNA DNA 1 109 -5 475 324 28 6 chr15 60092496 60092678 -41287843 + MIR SINE MIR 44 229 -33 275 299 81 53 chr15 60092746 60093030 -41287491 - L1MEd LINE L1 -4914 1205 914 518 187 89 8 chr15 60094146 60094269 -41286252 - FLAM_C SINE Alu 0 133 1 241 292 108 39 chr15 60094649 60094779 -41285742 - MIR SINE MIR -110 152 14 2216 96 20 0 chr15 60095383 60095686 -41284835 - AluSp SINE Alu -3 310 2 453 262 62 0 chr15 60095784 60095929 -41284592 - L1ME4a LINE L1 -3 6118 5965 219 204 0 20 chr15 60095932 60096058 -41284463 + (TA)n Simple_repeat Simple_repeat 1 123 0 258 274 48 43 chr15 60096336 60096566 -41283955 - L1M4 LINE L1 -1547 4599 4369 248 299 48 5 chr15 60096738 60096925 -41283596 - L1M4 LINE L1 -2147 3999 3805 1613 155 45 24 chr15 60096945 60097236 -41283285 - AluJo SINE Alu -15 297 1 231 227 0 0 chr15 60097389 60097455 -41283066 + A-rich Low_complexity Low_complexity 5 70 0 383 168 61 92 chr15 60097472 60097603 -41282918 - MER103 DNA DNA -19 147 21 180 279 98 0 chr15 60098544 60098605 -41281916 - L2 LINE L2 -242 3030 2964 325 230 40 50 chr15 60098633 60098733 -41281788 - MIR SINE MIR -46 216 118 2058 80 4 7 chr15 60098777 60099052 -41281469 + AluSg SINE Alu 27 300 -10 200 368 29 0 chr15 60099107 60099175 -41281346 - L2 LINE L2 -52 3220 3151 383 217 92 26 chr15 60099351 60099503 -41281018 + MER5B DNA MER1_type 1 162 -16 192 276 41 71 chr15 60100667 60100765 -41279756 + MIR SINE MIR 101 195 -67 893 217 42 0 chr15 60100915 60101104 -41279417 + MIR SINE MIR 20 216 -46 782 201 0 21 chr15 60101109 60101373 -41279148 + FLAM_A SINE Alu 1 261 0 185 43 0 0 chr15 60101381 60101404 -41279117 + MIR SINE MIR 226 248 -14 185 268 0 0 chr15 60101404 60101422 -41279099 + L2 LINE L2 3271 3311 -2 414 297 36 42 chr15 60101498 60101663 -41278858 - MER5A DNA MER1_type -5 184 21 1748 178 0 0 chr15 60102327 60102619 -41277902 + AluJb SINE Alu 1 292 -20 195 321 79 21 chr15 60103734 60103874 -41276647 + L2 LINE L2 2196 2343 -971 * 554 269 125 19 chr15 60103869 60104077 -41276444 + MIR SINE MIR 19 248 -14 308 330 11 0 chr15 60104200 60104294 -41276227 - MIR SINE MIR -63 145 51 2125 242 21 35 chr15 60104452 60105015 -41275506 - LTR60 LTR ERV1 -31 555 1 379 282 36 18 chr15 60105100 60105210 -41275311 - MER5A DNA MER1_type -23 166 55 480 291 44 30 chr15 60106245 60106498 -41274023 + MIR3 SINE MIR 4 262 0 403 269 98 52 chr15 60106563 60106791 -41273730 + L1M4c LINE L1 2189 2443 -3939 400 136 0 30 chr15 60106798 60106864 -41273657 - L2 LINE L2 0 3313 3250 335 285 117 30 chr15 60106866 60107560 -41272961 + L1M4c LINE L1 2449 3202 -3180 737 107 0 0 chr15 60107716 60107819 -41272702 - AluSp/q SINE Alu -16 297 195 1890 114 0 4 chr15 60108130 60108449 -41272072 - AluSx SINE Alu 0 332 15 216 158 0 0 chr15 60108731 60108769 -41271752 + (TTA)n Simple_repeat Simple_repeat 2 39 0 360 0 0 0 chr15 60108834 60108874 -41271647 + (TG)n Simple_repeat Simple_repeat 2 41 0 422 197 217 28 chr15 60109325 60109490 -41271031 + MIR SINE MIR 2 192 -54 318 279 197 8 chr15 60110162 60110406 -41270115 - L1ME4a LINE L1 -120 6001 5712 207 0 0 0 chr15 60110449 60110472 -41270049 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 1097 154 0 6 chr15 60110491 60110666 -41269855 - AluJb SINE Alu -23 289 116 2051 79 8 8 chr15 60160839 60161105 -41219416 + AluSx SINE Alu 31 296 -16 202 323 11 21 chr15 60161460 60161553 -41218968 - MIR SINE MIR -73 189 98 875 118 7 30 chr15 60161555 60161690 -41218831 + FLAM_C SINE Alu 1 132 -1 2681 151 74 35 chr15 60161751 60162240 -41218281 + LTR12 LTR ERV1 1 508 -206 341 209 47 0 chr15 60163047 60163133 -41217388 + LTR67 LTR ERVL 468 557 0 222 308 113 29 chr15 60163216 60163500 -41217021 + L2 LINE L2 2913 3304 -9 2296 109 0 0 chr15 60163812 60164115 -41216406 - AluSg1 SINE Alu -6 303 1 341 279 150 14 chr15 60164136 60164283 -41216238 + MIR3 SINE MIR 16 182 -26 186 43 0 0 chr15 60164353 60164376 -41216145 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 247 224 0 0 chr15 60164959 60165008 -41215513 + L1MA9 LINE L1 6213 6261 -51 2324 67 0 17 chr15 60165244 60165544 -41214977 - AluY SINE Alu -16 295 1 197 341 119 58 chr15 60166030 60166256 -41214265 + L2 LINE L2 3009 3248 -24 22 0 0 0 chr15 60166620 60166642 -41213879 + AT_rich Low_complexity Low_complexity 1 22 0 2145 102 0 11 chr15 60166650 60166967 -41213554 + AluSx SINE Alu 1 314 0 2197 105 7 0 chr15 60167544 60167840 -41212681 + AluSx SINE Alu 1 298 -14 284 331 115 31 chr15 60167896 60168286 -41212235 + L2 LINE L2 2475 2897 -417 180 200 36 55 chr15 60168512 60168567 -41211954 + L2 LINE L2 3213 3266 -6 2399 176 135 2 chr15 60169282 60169725 -41210796 + MLT1D LTR MaLR 4 505 0 266 305 85 0 chr15 60170025 60170107 -41210414 + MIR SINE MIR 23 111 -151 1257 204 184 14 chr15 60170393 60170751 -41209770 - LTR16C LTR ERVL 0 491 73 809 120 17 8 chr15 60170967 60171084 -41209437 - FLAM_C SINE Alu -24 119 2 480 176 185 19 chr15 60171105 60171213 -41209308 - FLAM_A SINE Alu -7 126 1 2222 131 0 0 chr15 60171217 60171530 -41208991 - AluSq SINE Alu 0 313 1 1843 116 34 55 chr15 60171540 60171833 -41208688 - AluSx SINE Alu -25 287 1 2069 123 10 23 chr15 60171835 60172143 -41208378 - AluSx SINE Alu -8 304 1 1651 133 98 0 chr15 60172602 60172857 -41207664 - AluJb SINE Alu -32 280 1 1697 137 35 3 chr15 60173134 60173418 -41207103 + L1MA2 LINE L1 6012 6304 0 257 288 27 0 chr15 60173801 60173874 -41206647 + MLT1J LTR MaLR 99 173 -338 202 132 26 0 chr15 60174455 60174493 -41206028 + A-rich Low_complexity Low_complexity 2 40 0 1877 155 21 3 chr15 60174577 60174868 -41205653 + AluJo SINE Alu 14 309 -3 1427 168 27 12 chr15 60175167 60175423 -41205098 - AluJb SINE Alu -14 298 39 21 0 0 0 chr15 60175950 60175971 -41204550 + AT_rich Low_complexity Low_complexity 1 21 0 281 154 0 58 chr15 60175989 60176041 -41204480 + MER112 DNA MER1_type 2 50 -210 370 0 0 39 chr15 60176061 60176113 -41204408 + (CA)n Simple_repeat Simple_repeat 2 51 0 673 276 130 45 chr15 60176153 60176616 -41203905 + MLT1J LTR MaLR 2 503 -8 467 245 0 27 chr15 60176621 60176768 -41203753 + MER112 DNA MER1_type 111 253 -7 1623 163 32 18 chr15 60177290 60177572 -41202949 - AluJo SINE Alu -26 286 1 21 0 0 0 chr15 60177644 60177665 -41202856 + AT_rich Low_complexity Low_complexity 1 21 0 1790 178 0 10 chr15 60178080 60178373 -41202148 - AluJb SINE Alu -22 290 1 2181 75 0 0 chr15 60178616 60178883 -41201638 - AluSp SINE Alu -46 267 1 1429 141 3 90 chr15 60179086 60179399 -41201122 - AluJo SINE Alu 0 308 21 2060 126 7 0 chr15 60179572 60179857 -41200664 - AluSx SINE Alu -25 287 1 1498 174 14 44 chr15 60181730 60182023 -41198498 + AluJo SINE Alu 2 285 -27 2044 120 7 0 chr15 60182142 60182457 -41198064 - AluSx SINE Alu 0 317 1 1941 165 76 33 chr15 60183415 60183639 -41196882 - L1MC4 LINE L1 -4 8038 7788 2241 108 3 13 chr15 60183639 60183954 -41196567 + AluSx SINE Alu 1 312 0 1941 165 76 33 chr15 60183954 60184124 -41196397 - L1MC4 LINE L1 -254 7788 7627 * 2094 158 50 17 chr15 60184123 60184431 -41196090 - L1MC4 LINE L1 -619 7423 7096 2114 107 10 3 chr15 60184431 60184721 -41195800 + AluSx SINE Alu 1 292 -20 2094 158 50 17 chr15 60184721 60184829 -41195692 - L1MC4 LINE L1 -946 7096 6993 237 270 146 0 chr15 60184928 60185017 -41195504 - L2 LINE L2 -15 3298 3197 1956 157 0 23 chr15 60185082 60185388 -41195133 + AluJo SINE Alu 1 299 -13 1713 181 7 0 chr15 60185465 60185752 -41194769 - L1PA16 LINE L1 -2 6164 5876 1510 167 14 37 chr15 60185881 60186175 -41194346 + AluJb SINE Alu 5 291 -21 784 163 16 0 chr15 60186715 60186838 -41193683 - FLAM_A SINE Alu -8 125 1 2043 138 0 3 chr15 60188184 60188496 -41192025 - AluSx SINE Alu -1 311 1 1640 231 71 32 chr15 60188587 60189025 -41191496 - MLT1F LTR MaLR -87 455 1 649 256 73 106 chr15 60189025 60189450 -41191071 - MLT1F-int LTR MaLR 0 1371 961 822 149 8 0 chr15 60189471 60189605 -41190916 - AluJb SINE Alu -176 136 2 2305 97 0 0 chr15 60189630 60189941 -41190580 - AluSx SINE Alu -1 311 1 227 267 53 13 chr15 60190175 60190250 -41190271 - MLT1F-int LTR MaLR -576 795 718 446 274 68 0 chr15 60190470 60190616 -41189905 - MLT1F-int LTR MaLR -765 606 451 1025 112 53 6 chr15 60190616 60190786 -41189735 + MSTB LTR MaLR 211 388 -38 192 111 0 0 chr15 60190786 60190822 -41189699 + (A)n Simple_repeat Simple_repeat 1 36 0 378 320 33 4 chr15 60190832 60191102 -41189419 - MLT1F-int LTR MaLR -918 453 61 183 80 0 0 chr15 60191103 60191128 -41189393 + (CA)n Simple_repeat Simple_repeat 2 26 0 1536 145 51 30 chr15 60191132 60191428 -41189093 - L1MB7 LINE L1 -19 6165 5864 2245 188 87 38 chr15 60191430 60191935 -41188586 - MLT1F LTR MaLR -3 539 10 760 232 60 0 chr15 60192359 60192510 -41188011 - FRAM SINE Alu -15 161 2 1679 178 28 0 chr15 60192524 60192830 -41187691 - AluJb SINE Alu 0 312 1 1265 263 104 41 chr15 60192842 60193332 -41187189 + MLT1H LTR MaLR 22 542 -7 2070 116 10 0 chr15 60193457 60193751 -41186770 - AluSq SINE Alu -16 297 1 334 264 280 10 chr15 60193754 60193947 -41186574 - MIR SINE MIR -7 255 11 1759 152 3 7 chr15 60193980 60194269 -41186252 + AluJb SINE Alu 8 295 -17 3942 178 45 52 chr15 60195572 60195802 -41184719 - Charlie1 DNA MER1_type -15 2746 2516 10510 28 4 111 chr15 60195802 60197332 -41183189 + SVA Other Other 10 1376 -10 3942 178 45 52 chr15 60197332 60197566 -41182955 - Charlie1 DNA MER1_type -245 2516 2282 1981 130 3 0 chr15 60197566 60197859 -41182662 - AluSq SINE Alu -19 294 1 3942 178 45 52 chr15 60197859 60197960 -41182561 - Charlie1 DNA MER1_type -479 2282 2182 1886 126 0 0 chr15 60197960 60198267 -41182254 - AluJb SINE Alu 0 318 12 3942 178 45 52 chr15 60198267 60198459 -41182062 - Charlie1 DNA MER1_type -579 2182 1990 1463 194 23 16 chr15 60198459 60198768 -41181753 + AluJb SINE Alu 1 311 -1 3942 178 45 52 chr15 60198768 60198981 -41181540 - Charlie1 DNA MER1_type -771 1990 1778 7666 21 15 0 chr15 60198998 60200334 -41180187 - L1PA3 LINE L1 -3 6152 4802 2020 88 0 34 chr15 60200351 60200647 -41179874 + AluY SINE Alu 1 286 -25 180 179 39 0 chr15 60200648 60200726 -41179795 + (TA)n Simple_repeat Simple_repeat 1 81 0 * 295 119 17 17 chr15 60200723 60200782 -41179739 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 263 194 81 0 chr15 60200782 60200844 -41179677 - AluS SINE Alu -236 67 1 671 134 0 0 chr15 60201895 60201992 -41178529 + FLAM_A SINE Alu 35 131 -11 345 256 81 38 chr15 60202060 60202220 -41178301 + MLT1B LTR MaLR 1 167 -198 574 226 43 43 chr15 60202279 60202443 -41178078 + MLT1B LTR MaLR 212 375 -15 1155 98 15 5 chr15 60202643 60202810 -41177711 - LTR12 LTR ERV1 0 714 142 8130 55 8 7 chr15 60202943 60203949 -41176572 + LTR13 LTR ERVK 1 1007 0 1205 159 156 33 chr15 60204104 60204406 -41176115 + MER44D DNA MER2_type 1 609 0 22 56 0 0 chr15 60205284 60205320 -41175201 + GC_rich Low_complexity Low_complexity 1 36 0 206 146 0 18 chr15 60205332 60205387 -41175134 + (CCCCAG)n Simple_repeat Simple_repeat 3 56 0 267 236 0 28 chr15 60205658 60205730 -41174791 + T-rich Low_complexity Low_complexity 4 73 0 258 301 214 18 chr15 60205733 60205962 -41174559 + L2 LINE L2 3015 3288 -25 387 60 0 0 chr15 60206449 60206499 -41174022 + (CA)n Simple_repeat Simple_repeat 2 51 0 3227 136 6 28 chr15 60207041 60207314 -41173207 - LOR1a LTR ERV1 0 497 239 1968 120 54 42 chr15 60207314 60207647 -41172874 + MER1B DNA MER1_type 1 337 0 3227 136 6 28 chr15 60207647 60207881 -41172640 - LOR1a LTR ERV1 -258 239 1 1989 142 39 70 chr15 60208066 60208431 -41172090 - LTR56 LTR ERV1 0 445 95 2028 138 0 0 chr15 60208431 60208727 -41171794 - AluJb SINE Alu -5 307 12 1989 142 39 70 chr15 60208727 60208820 -41171701 - LTR56 LTR ERV1 -350 95 1 2211 96 0 3 chr15 60209003 60209305 -41171216 + AluSc SINE Alu 1 301 -8 382 232 42 0 chr15 60209578 60209746 -41170775 + (TA)n Simple_repeat Simple_repeat 2 176 0 2057 171 59 13 chr15 60209899 60210290 -41170231 - MER87 LTR ERV1 0 541 133 1585 150 49 7 chr15 60210290 60210577 -41169944 + AluJb SINE Alu 1 299 -13 493 290 61 90 chr15 60210638 60210991 -41169530 - L2 LINE L2 -80 3233 2892 2174 112 0 0 chr15 60210991 60211287 -41169234 + AluSx SINE Alu 1 296 -16 493 290 61 90 chr15 60211287 60211343 -41169178 - L2 LINE L2 -421 2892 2836 1388 216 75 57 chr15 60211471 60211834 -41168687 + L1M4 LINE L1 3860 4236 -1910 2118 128 0 3 chr15 60211834 60212139 -41168382 + AluSx SINE Alu 1 304 -8 1388 216 75 57 chr15 60212139 60212285 -41168236 + L1M4 LINE L1 4236 4378 -1768 1992 151 0 0 chr15 60212289 60212588 -41167933 + AluJb SINE Alu 1 299 -13 427 325 115 56 chr15 60212764 60212941 -41167580 - L1ME1 LINE L1 -284 5882 5717 2017 116 7 0 chr15 60212941 60213233 -41167288 + AluSx SINE Alu 1 294 -18 427 325 115 56 chr15 60213233 60213498 -41167023 - L1ME1 LINE L1 -449 5717 5414 370 287 52 17 chr15 60214424 60214539 -41165982 - MIR SINE MIR -73 189 71 547 273 58 12 chr15 60214991 60215163 -41165358 + MIR SINE MIR 83 262 0 440 252 120 28 chr15 60215290 60215495 -41165026 + MIR SINE MIR 11 220 -42 2290 71 3 0 chr15 60215585 60215879 -41164642 + AluSx SINE Alu 4 298 -14 248 221 35 58 chr15 60215879 60215965 -41164556 - L1ME4a LINE L1 -62 6059 5976 255 236 20 31 chr15 60216010 60216117 -41164404 - MIR SINE MIR -102 106 2 21 57 0 0 chr15 60218513 60218548 -41161973 + AT_rich Low_complexity Low_complexity 1 35 0 226 330 85 25 chr15 60219096 60219214 -41161307 - L3 LINE CR1 -74 1503 1379 1506 173 42 3 chr15 60219235 60219346 -41161175 + AluJo SINE Alu 12 117 -195 264 100 0 0 chr15 60219346 60219386 -41161135 + (CTA)n Simple_repeat Simple_repeat 2 41 0 1506 173 42 3 chr15 60219386 60219557 -41160964 + AluJo SINE Alu 117 305 -7 1134 194 68 23 chr15 60219897 60220160 -41160361 - ORSL DNA AcHobo 0 275 1 2343 97 0 0 chr15 60220418 60220727 -41159794 - AluSx SINE Alu -3 309 1 1471 39 0 0 chr15 60220846 60221024 -41159497 - AluY SINE Alu -6 305 128 281 268 170 39 chr15 60221238 60221391 -41159130 + MIR3 SINE MIR 36 208 0 1878 138 0 14 chr15 60222265 60222604 -41157917 + AluJb SINE Alu 1 312 0 1938 188 0 9 chr15 60222888 60223223 -41157298 - MER58B DNA MER1_type -3 338 7 228 204 167 0 chr15 60223619 60223673 -41156848 - L2 LINE L2 0 3272 3210 457 258 84 13 chr15 60223836 60223883 -41156638 - MER96 DNA MER1_type? -6 169 127 1765 168 0 19 chr15 60223883 60224199 -41156322 + AluJo SINE Alu 1 310 -2 2318 70 3 3 chr15 60224202 60224504 -41156017 + AluY SINE Alu 1 302 -9 457 258 84 13 chr15 60224504 60224607 -41155914 - MER96 DNA MER1_type? -49 126 4 258 237 23 0 chr15 60225161 60225268 -41155253 + MER5A DNA MER1_type 4 113 -76 225 94 0 0 chr15 60225824 60225856 -41154665 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1562 177 18 0 chr15 60225860 60226137 -41154384 - AluJb SINE Alu -30 282 1 7924 57 1 0 chr15 60226144 60227109 -41153412 + LTR5 LTR ERVK 1 966 -3 1303 156 7 78 chr15 60227118 60227425 -41153096 - AluJo SINE Alu 0 312 28 191 182 0 0 chr15 60227461 60227494 -41153027 - MIR SINE MIR -67 141 109 259 361 7 13 chr15 60227495 60227592 -41152929 - MIR SINE MIR -76 132 32 1800 123 0 34 chr15 60227935 60228227 -41152294 - AluJb SINE Alu -19 293 12 687 311 37 17 chr15 60229527 60229768 -41150753 - MIR SINE MIR -15 247 2 2088 105 23 0 chr15 60230049 60230355 -41150166 - AluSp SINE Alu 0 313 1 225 0 0 0 chr15 60231623 60231648 -41148873 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 196 260 41 41 chr15 60232801 60232874 -41147647 + MIR SINE MIR 43 115 -147 268 281 156 69 chr15 60233965 60234125 -41146396 + MIR3 SINE MIR 14 187 -21 1983 96 3 75 chr15 60234879 60235228 -41145293 + AluSx SINE Alu 1 326 0 1848 153 0 14 chr15 60236132 60236427 -41144094 - AluSx SINE Alu -21 291 1 361 294 103 22 chr15 60236452 60236636 -41143885 - MIR SINE MIR -29 233 35 219 69 0 0 chr15 60238285 60238314 -41142207 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 301 194 45 0 chr15 60239174 60239241 -41141280 - L1MC4 LINE L1 -1333 6709 6640 1492 129 4 17 chr15 60240083 60240315 -41140206 + AluJb SINE Alu 73 301 -11 2001 187 46 35 chr15 60240315 60240749 -41139772 + L1MB7 LINE L1 5730 6168 -16 2529 64 0 10 chr15 60240849 60241160 -41139361 - AluY SINE Alu -3 308 1 2122 134 0 0 chr15 60241462 60241754 -41138767 - AluSx SINE Alu -20 292 1 1618 179 101 80 chr15 60241944 60242229 -41138292 + MER119 DNA MER1_type 99 399 -184 1391 157 88 8 chr15 60242229 60242490 -41138031 + AluJo SINE Alu 1 282 -30 1618 179 101 80 chr15 60242490 60242679 -41137842 + MER119 DNA MER1_type 399 583 0 2448 78 3 7 chr15 60242710 60243016 -41137505 - AluSp SINE Alu -8 305 1 312 102 41 0 chr15 60243579 60243628 -41136893 - L1PA7 LINE L1 -2 6152 6102 1231 139 0 31 chr15 60243769 60243963 -41136558 + AluSg/x SINE Alu 110 297 -13 2077 98 4 0 chr15 60245229 60245504 -41135017 + AluY SINE Alu 1 276 -35 219 103 0 0 chr15 60245505 60245544 -41134977 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 955 193 141 36 chr15 60246062 60246339 -41134182 - MER33 DNA MER1_type -25 299 1 28 91 0 0 chr15 60247964 60248041 -41132480 + GC_rich Low_complexity Low_complexity 1 77 0 1499 174 15 11 chr15 60248407 60248672 -41131849 - AluJo SINE Alu -27 285 20 490 103 26 0 chr15 60248789 60248867 -41131654 - Alu SINE Alu -3 309 230 1102 79 0 7 chr15 60248967 60249107 -41131414 + AluSq SINE Alu 135 273 -40 198 0 0 0 chr15 60249107 60249129 -41131392 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 2347 45 7 0 chr15 60249277 60249563 -41130958 - L1PA7 LINE L1 0 6154 5867 1876 170 0 3 chr15 60251357 60251657 -41128864 - AluJo SINE Alu -13 299 1 251 154 0 19 chr15 60252554 60252606 -41127915 + CT-rich Low_complexity Low_complexity 3 53 0 2344 92 0 0 chr15 60253325 60253620 -41126901 + AluSg SINE Alu 1 295 -15 1960 117 0 0 chr15 60253804 60254077 -41126444 - AluSx SINE Alu 0 312 40 264 32 0 0 chr15 60254077 60254108 -41126413 - U2 snRNA snRNA -157 31 1 * 386 169 0 0 chr15 60254104 60254163 -41126358 - AluSx SINE Alu -244 59 1 180 0 0 0 chr15 60254967 60254987 -41125534 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 2268 82 3 13 chr15 60254988 60255293 -41125228 + AluSx SINE Alu 1 302 -10 2251 91 7 0 chr15 60255617 60255915 -41124606 - AluSg SINE Alu -10 300 1 2323 84 0 0 chr15 60255938 60256223 -41124298 - AluSc SINE Alu -23 286 2 21 0 0 0 chr15 60256711 60256732 -41123789 + AT_rich Low_complexity Low_complexity 1 21 0 913 198 6 0 chr15 60257617 60257774 -41122747 + FAM SINE Alu 1 158 -17 475 278 77 6 chr15 60258223 60258392 -41122129 - MIR3 SINE MIR -11 197 17 2078 144 0 0 chr15 60258750 60259049 -41121472 + AluSx SINE Alu 1 299 -13 419 285 122 20 chr15 60259131 60259377 -41121144 + MLT1K LTR MaLR 103 373 -215 1893 131 116 44 chr15 60259932 60260159 -41120362 + MER1A DNA MER1_type 1 263 -2439 2227 113 7 0 chr15 60260159 60260460 -41120061 + AluSx SINE Alu 1 303 -9 1893 131 116 44 chr15 60260460 60260576 -41119945 + MER1A DNA MER1_type 263 369 -160 387 321 57 25 chr15 60261384 60261543 -41118978 - L2 LINE L2 0 3272 3109 2383 100 0 0 chr15 60261804 60262105 -41118416 + AluSq SINE Alu 1 301 -12 274 267 27 13 chr15 60262366 60262441 -41118080 + MLT1K LTR MaLR 340 415 -173 2615 44 0 0 chr15 60263455 60263752 -41116769 - AluY SINE Alu -14 297 1 216 0 0 0 chr15 60264030 60264054 -41116467 + (CAG)n Simple_repeat Simple_repeat 2 25 0 732 184 0 0 chr15 60264375 60264500 -41116021 - Charlie1 DNA MER1_type 0 2761 2637 241 287 23 0 chr15 60264586 60264673 -41115848 + MLT1K LTR MaLR 500 588 0 292 304 130 6 chr15 60264829 60264990 -41115531 - MIR SINE MIR -46 216 36 255 282 8 68 chr15 60265988 60266254 -41114267 + G-rich Low_complexity Low_complexity 1 249 0 984 119 8 0 chr15 60269011 60269145 -41111376 + AluJo SINE Alu 1 135 -177 1679 158 11 25 chr15 60269152 60269436 -41111085 + AluJo SINE Alu 10 289 -23 2306 77 3 3 chr15 60269729 60270042 -41110479 + AluY SINE Alu 1 313 0 209 331 66 26 chr15 60270328 60270479 -41110042 - MIR3 SINE MIR -6 202 46 864 214 104 5 chr15 60270928 60271120 -41109401 + MER58C DNA MER1_type 1 211 -4 279 250 18 0 chr15 60272396 60272452 -41108069 - Charlie8 DNA MER1_type -2354 63 7 234 273 82 27 chr15 60272626 60272736 -41107785 + MIR SINE MIR 66 181 -81 29 28 0 0 chr15 60273350 60273386 -41107135 + AT_rich Low_complexity Low_complexity 1 36 0 1832 184 10 0 chr15 60273531 60273869 -41106652 - AluSx SINE Alu 0 341 1 555 233 18 37 chr15 60273946 60274109 -41106412 + MER117 DNA MER1_type 30 189 -8 21 0 0 0 chr15 60275782 60275803 -41104718 + AT_rich Low_complexity Low_complexity 1 21 0 1014 130 13 7 chr15 60275926 60276080 -41104441 - AluJb SINE Alu -157 155 1 743 168 0 8 chr15 60276705 60276836 -41103685 + FLAM_C SINE Alu 1 130 -3 209 270 48 0 chr15 60276923 60276986 -41103535 - MIR SINE MIR -115 147 82 2474 36 0 78 chr15 60278170 60278501 -41102020 + AluY SINE Alu 1 305 -6 242 348 0 35 chr15 60279310 60279425 -41101096 + MIR3 SINE MIR 77 187 -21 635 236 160 27 chr15 60279804 60280029 -41100492 - MIR SINE MIR 0 262 8 1862 138 6 66 chr15 60281075 60281215 -41099306 + AluJo SINE Alu 1 148 -164 2190 95 3 11 chr15 60281215 60281539 -41098982 + AluSx SINE Alu 1 322 0 1862 138 6 66 chr15 60281539 60281716 -41098805 + AluJo SINE Alu 148 301 -11 197 261 234 9 chr15 60282141 60282252 -41098269 + L2 LINE L2 3136 3271 -1 266 309 123 37 chr15 60282786 60283332 -41097189 + L2 LINE L2 1570 2162 -1152 333 366 9 0 chr15 60283394 60283506 -41097015 + L2 LINE L2 3134 3246 -26 2362 81 3 23 chr15 60283753 60284063 -41096458 - AluSc SINE Alu -5 304 1 1917 112 11 4 chr15 60285093 60285361 -41095160 - AluSx SINE Alu -13 299 30 1074 135 70 11 chr15 60285514 60285699 -41094822 - AluJb SINE Alu -106 206 11 198 272 97 88 chr15 60286292 60286406 -41094115 + L2 LINE L2 3158 3272 0 202 284 45 0 chr15 60286652 60286719 -41093802 - L3 LINE CR1 -18 1559 1490 2272 100 7 3 chr15 60287056 60287355 -41093166 - AluSx SINE Alu -12 300 1 2147 85 58 10 chr15 60287969 60288263 -41092258 + AluSx SINE Alu 1 308 -4 1877 258 91 44 chr15 60289089 60289331 -41091190 + MER115 DNA AcHobo 8 237 -456 2177 129 3 3 chr15 60289339 60289649 -41090872 - AluSx SINE Alu -2 310 1 2096 117 45 0 chr15 60289649 60289939 -41090582 - AluSx SINE Alu -9 303 1 912 122 0 14 chr15 60289649 60289779 -41090742 - AluSg/x SINE Alu -9 303 174 1877 258 91 44 chr15 60289779 60290326 -41090195 + MER115 DNA AcHobo 237 676 -17 378 173 0 0 chr15 60290516 60290591 -41089930 + (TG)n Simple_repeat Simple_repeat 2 76 0 238 190 76 38 chr15 60290823 60290902 -41089619 + MIR SINE MIR 90 171 -91 2248 113 138 43 chr15 60291534 60291754 -41088767 + MSTA LTR MaLR 1 199 -229 2244 109 0 0 chr15 60291754 60292058 -41088463 + AluY SINE Alu 1 304 -7 2248 113 138 43 chr15 60292058 60292228 -41088293 + MSTA LTR MaLR 199 428 0 973 203 14 14 chr15 60292745 60292952 -41087569 + MIR SINE MIR 37 243 -19 210 143 0 0 chr15 60292960 60292995 -41087526 + (CACCAT)n Simple_repeat Simple_repeat 4 38 0 2078 94 65 0 chr15 60294608 60294884 -41085637 - AluSg SINE Alu -15 295 2 473 127 13 0 chr15 60295011 60295090 -41085431 - L1MB8 LINE L1 0 6178 6099 2216 88 0 7 chr15 60295094 60295417 -41085104 + AluSc SINE Alu 5 309 0 886 302 155 36 chr15 60295434 60295817 -41084704 + L3 LINE CR1 828 1293 -284 1812 177 3 3 chr15 60295817 60296117 -41084404 - AluJo SINE Alu -12 300 1 886 302 155 36 chr15 60296117 60296263 -41084258 + L3 LINE CR1 1293 1420 -157 928 132 0 22 chr15 60296284 60296420 -41084101 - FLAM_C SINE Alu 0 133 1 564 215 0 0 chr15 60296752 60296859 -41083662 - MER63 DNA MER1_type -273 789 683 2016 97 0 74 chr15 60297034 60297345 -41083176 - AluSx SINE Alu -14 298 11 503 248 206 0 chr15 60297893 60298034 -41082487 - MER5B DNA MER1_type 0 178 9 251 222 121 40 chr15 60298226 60298325 -41082196 - MIR SINE MIR -52 210 104 1639 181 13 19 chr15 60298625 60298934 -41081587 - AluJo SINE Alu -2 310 4 1991 96 75 4 chr15 60299231 60299511 -41081010 + AluSx SINE Alu 1 300 -12 500 237 59 0 chr15 60300041 60300159 -41080362 - MER5B DNA MER1_type -10 168 44 365 231 264 0 chr15 60300401 60300522 -41079999 - MER5A DNA MER1_type 0 189 37 313 203 16 0 chr15 60300763 60300827 -41079694 - LTR33 LTR ERVL -7 514 450 2416 88 0 3 chr15 60301111 60301417 -41079104 + AluSx SINE Alu 1 305 -7 1231 118 65 5 chr15 60301522 60301708 -41078813 + AluSc SINE Alu 96 292 -17 183 200 0 29 chr15 60302015 60302050 -41078471 - MIR SINE MIR -136 72 39 653 187 175 12 chr15 60302408 60302574 -41077947 + AluJo SINE Alu 119 311 -1 878 274 46 20 chr15 60302596 60302920 -41077601 + L1ME4a LINE L1 5414 5732 -389 2000 180 72 48 chr15 60302987 60303054 -41077467 - MLT1D LTR MaLR 0 505 441 2014 99 0 4 chr15 60303054 60303353 -41077168 - AluSx SINE Alu 0 318 21 2000 180 72 48 chr15 60303353 60303768 -41076753 - MLT1D LTR MaLR -64 441 10 313 270 104 51 chr15 60303830 60303961 -41076560 + L1ME4a LINE L1 5708 5831 -290 1453 139 0 0 chr15 60303961 60304170 -41076351 + AluJb SINE Alu 85 293 -19 313 270 104 51 chr15 60304170 60304431 -41076090 + L1ME4a LINE L1 5831 6121 0 501 79 0 0 chr15 60304455 60304518 -41076003 + Alu SINE Alu 2 64 -245 1318 158 0 58 chr15 60304619 60304790 -41075731 - MER7C DNA MER2_type -2801 227 48 2242 107 0 10 chr15 60304790 60305089 -41075432 + AluSx SINE Alu 1 296 -16 204 40 0 0 chr15 60305089 60305114 -41075407 + (CAT)n Simple_repeat Simple_repeat 2 26 0 1318 158 0 58 chr15 60305114 60305182 -41075339 - MER7C DNA MER2_type -2978 50 1 816 263 70 103 chr15 60305182 60305607 -41074914 - LTR33A LTR ERVL -44 479 69 188 231 0 0 chr15 60306855 60306894 -41073627 + L2 LINE L2 3265 3303 -10 479 184 48 48 chr15 60307959 60308084 -41072437 + MER112 DNA MER1_type 1 125 -135 362 189 40 0 chr15 60308176 60308250 -41072271 + MER112 DNA MER1_type 178 254 -6 1770 124 11 4 chr15 60308305 60308572 -41071949 - AluSc SINE Alu 0 309 41 261 0 0 0 chr15 60308597 60308626 -41071895 + (A)n Simple_repeat Simple_repeat 1 29 0 453 289 108 5 chr15 60309259 60309453 -41071068 - MIR SINE MIR 0 262 49 2345 87 3 0 chr15 60310753 60311041 -41069480 - AluSg SINE Alu -12 298 10 1037 150 161 21 chr15 60311188 60311381 -41069140 + MER7C DNA MER2_type 392 611 -1 257 128 64 21 chr15 60311456 60311503 -41069018 + LTR50 LTR ERVL 747 795 0 213 237 118 13 chr15 60311633 60311709 -41068812 + MIR SINE MIR 34 117 -145 24 0 0 0 chr15 60311854 60311878 -41068643 + AT_rich Low_complexity Low_complexity 1 24 0 408 260 61 3 chr15 60312610 60312758 -41067763 + MIR SINE MIR 20 174 -34 218 125 0 0 chr15 60312758 60312790 -41067731 + L2 LINE L2 3265 3296 -17 253 246 15 15 chr15 60313424 60313489 -41067032 + L2 LINE L2 3234 3298 -15 2027 148 3 0 chr15 60313535 60313846 -41066675 - AluJb SINE Alu 0 312 1 4405 92 0 4 chr15 60314402 60314958 -41065563 - MER41A LTR ERV1 0 554 1 1652 169 16 44 chr15 60315576 60316022 -41064499 - AluJo SINE Alu 0 437 1 2862 108 9 41 chr15 60316401 60316844 -41063677 + MER1A DNA MER1_type 101 529 0 2110 91 0 18 chr15 60316934 60317230 -41063291 - AluSc SINE Alu 0 301 11 21 0 0 0 chr15 60317512 60317533 -41062988 + AT_rich Low_complexity Low_complexity 1 21 0 1603 170 13 29 chr15 60319332 60319643 -41060878 + AluJo SINE Alu 1 306 -6 31 44 0 0 chr15 60319747 60319792 -41060729 + AT_rich Low_complexity Low_complexity 1 45 0 1285 135 57 0 chr15 60321773 60321808 -41058713 + AluJo SINE Alu 85 117 -195 207 0 0 0 chr15 60321808 60321831 -41058690 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 1285 135 57 0 chr15 60321831 60321987 -41058534 + AluJo SINE Alu 117 287 -25 2219 106 0 0 chr15 60322094 60322396 -41058125 + AluSq SINE Alu 1 302 -11 230 122 20 20 chr15 60322926 60322975 -41057546 + (TA)n Simple_repeat Simple_repeat 2 50 0 307 260 148 18 chr15 60323040 60323209 -41057312 - L1ME2 LINE L1 -260 5904 5714 447 298 18 0 chr15 60323328 60323442 -41057079 + MIR3 SINE MIR 86 201 -7 7167 115 27 5 chr15 60323903 60325436 -41055085 - L1MA3 LINE L1 -10 6295 4732 23 0 0 0 chr15 60325502 60325525 -41054996 + AT_rich Low_complexity Low_complexity 1 23 0 460 239 211 71 chr15 60326065 60326487 -41054034 + MLT1L LTR MaLR 129 609 -6 2133 98 30 14 chr15 60326691 60326988 -41053533 - AluSx SINE Alu -10 302 1 181 301 86 65 chr15 60327676 60327769 -41052752 - MIR3 SINE MIR -46 162 68 1864 139 7 24 chr15 60328341 60328636 -41051885 + AluSx SINE Alu 1 290 -22 1224 150 26 22 chr15 60328727 60328954 -41051567 - L1MB2 LINE L1 0 6171 5944 181 352 0 0 chr15 60328987 60329041 -41051480 - L2 LINE L2 -12 3301 3248 526 237 0 129 chr15 60329732 60329878 -41050643 + MER5B DNA MER1_type 16 135 -43 1500 217 43 50 chr15 60329878 60330275 -41050246 - MSTD LTR MaLR -2 394 1 526 237 0 129 chr15 60330275 60330314 -41050207 + MER5B DNA MER1_type 135 177 -1 219 356 40 0 chr15 60331148 60331249 -41049272 - MIR3 SINE MIR -19 189 85 472 286 81 16 chr15 60331275 60331460 -41049061 + MIR3 SINE MIR 3 199 -9 309 269 77 10 chr15 60331567 60331671 -41048850 - MER21B LTR ERV1 -50 813 703 3740 194 9 43 chr15 60331693 60331810 -41048711 - MER21B LTR ERV1 -132 731 612 2313 114 5 30 chr15 60331810 60332011 -41048510 - MER46B DNA MER2_type -2495 236 172 2273 89 3 3 chr15 60332011 60332304 -41048217 - AluSp SINE Alu -20 293 1 2313 114 5 30 chr15 60332304 60332469 -41048052 - MER46B DNA MER2_type -2559 172 4 3740 194 9 43 chr15 60332469 60333103 -41047418 - MER21B LTR ERV1 -251 612 5 1784 179 42 9 chr15 60333131 60333466 -41047055 - MLT1A1 LTR MaLR -17 348 3 203 336 156 8 chr15 60333870 60333998 -41046523 - MIR3 SINE MIR -21 187 41 2248 115 0 0 chr15 60334363 60334668 -41045853 + AluSg SINE Alu 1 305 -5 2706 24 0 0 chr15 60335986 60336283 -41044238 + AluYb8 SINE Alu 1 297 -21 180 347 31 41 chr15 60337268 60337366 -41043155 + L3b LINE CR1 1242 1338 -245 363 191 138 11 chr15 60337794 60337888 -41042633 + L2 LINE L2 3208 3313 0 530 336 60 20 chr15 60338381 60338631 -41041890 - MIR SINE MIR 0 262 3 390 134 0 0 chr15 60338802 60338869 -41041652 - L1MB4 LINE L1 -1 6179 6113 2406 84 3 0 chr15 60338880 60339177 -41041344 - AluSq SINE Alu -13 300 3 21 0 0 0 chr15 60339184 60339205 -41041316 + AT_rich Low_complexity Low_complexity 1 21 0 255 180 180 116 chr15 60339320 60339509 -41041012 - L1ME4a LINE L1 -3 6118 5918 222 361 84 28 chr15 60339513 60339667 -41040854 - L2 LINE L2 -497 2817 2673 881 174 0 0 chr15 60339667 60339799 -41040722 + AluJo/FLAM SINE Alu 2 133 -169 820 163 0 0 chr15 60339680 60339809 -41040712 + FLAM_C SINE Alu 15 143 0 222 361 84 28 chr15 60339799 60339968 -41040553 - L2 LINE L2 -641 2673 2487 * 574 278 121 43 chr15 60340362 60340643 -41039878 + L2 LINE L2 3010 3312 -1 225 296 130 17 chr15 60340610 60340725 -41039796 - L2 LINE L2 -982 2332 2205 * 2406 75 0 0 chr15 60340762 60341054 -41039467 + AluY SINE Alu 1 292 -19 320 263 143 8 chr15 60341943 60342084 -41038437 - MIR SINE MIR -42 166 6 24 32 0 0 chr15 60342787 60342818 -41037703 + AT_rich Low_complexity Low_complexity 1 31 0 2026 140 3 25 chr15 60343384 60343698 -41036823 - AluSx SINE Alu -5 307 1 1827 113 0 4 chr15 60343994 60344241 -41036280 - AluSq SINE Alu -67 246 1 2251 127 49 22 chr15 60344324 60344873 -41035648 - MER51A LTR ERV1 -2 632 1 2051 90 45 7 chr15 60344955 60345244 -41035277 - AluSc SINE Alu -9 300 1 2386 86 0 0 chr15 60345679 60345971 -41034550 - AluSc SINE Alu -17 292 1 939 74 33 0 chr15 60346410 60346532 -41033989 + L1PA7 LINE L1 6029 6154 0 2292 144 64 1 chr15 60346922 60347403 -41033118 + L1PB4 LINE L1 5304 5858 -298 193 309 82 10 chr15 60347979 60348076 -41032445 - L2 LINE L2 0 3272 3169 794 172 0 0 chr15 60348323 60348439 -41032082 + FLAM_A SINE Alu 1 116 -17 288 77 0 0 chr15 60348451 60348490 -41032031 + (TA)n Simple_repeat Simple_repeat 1 39 0 1641 191 0 31 chr15 60353747 60354067 -41026454 + AluSx SINE Alu 1 310 -2 2271 117 3 0 chr15 60354321 60354630 -41025891 - AluSx SINE Alu -2 310 1 1903 130 18 14 chr15 60354638 60354923 -41025598 - AluJb SINE Alu -24 288 3 184 328 130 48 chr15 60354980 60355693 -41024828 + L2 LINE L2 1273 2044 -1270 2105 140 100 42 chr15 60355792 60356250 -41024271 + MLT1D LTR MaLR 21 505 0 318 353 121 36 chr15 60356252 60356966 -41023555 + L2 LINE L2 2232 3047 -225 2309 87 10 0 chr15 60356966 60357264 -41023257 + AluSq SINE Alu 1 301 -12 318 353 121 36 chr15 60357264 60357492 -41023029 + L2 LINE L2 3047 3254 -18 1870 136 3 7 chr15 60357500 60357786 -41022735 + AluJb SINE Alu 2 286 -26 1635 135 8 16 chr15 60357906 60358056 -41022465 - AluJb SINE Alu -27 285 136 2126 100 6 60 chr15 60358056 60358241 -41022280 - AluSx SINE Alu -10 302 140 2029 122 7 3 chr15 60358241 60358545 -41021976 - AluSx SINE Alu -7 305 1 2126 100 6 60 chr15 60358545 60358678 -41021843 - AluSx SINE Alu -172 140 1 1635 135 8 16 chr15 60358678 60358771 -41021750 - AluJb SINE Alu -176 136 44 2195 124 68 25 chr15 60358822 60359145 -41021376 + MER1B DNA MER1_type 1 337 0 193 0 29 59 chr15 60359353 60359387 -41021134 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 229 270 172 55 chr15 60359603 60359766 -41020755 + MIR3 SINE MIR 16 197 -11 2186 119 0 0 chr15 60360030 60360316 -41020205 - AluSx SINE Alu -26 286 1 2230 104 0 10 chr15 60360766 60361089 -41019432 - AluSx SINE Alu 0 320 1 313 294 43 11 chr15 60361678 60361770 -41018751 - L2 LINE L2 -52 3261 3167 258 110 0 68 chr15 60362465 60362538 -41017983 + (CCCCCG)n Simple_repeat Simple_repeat 4 71 0 500 188 48 118 chr15 60363161 60363347 -41017174 + MER5B DNA MER1_type 2 174 -4 664 244 60 15 chr15 60364564 60364765 -41015756 - L2 LINE L2 -1 3312 3103 2354 95 0 3 chr15 60364834 60365138 -41015383 - AluSq SINE Alu -10 303 1 260 269 30 0 chr15 60365783 60365850 -41014671 - L3 LINE CR1 -82 1495 1427 1627 195 44 0 chr15 60365908 60366205 -41014316 + AluJb SINE Alu 2 311 -1 269 264 136 84 chr15 60366274 60366547 -41013974 - L3 LINE CR1 -354 1223 937 210 37 0 0 chr15 60366575 60366602 -41013919 + (A)n Simple_repeat Simple_repeat 1 27 0 34 0 0 0 chr15 60366801 60366835 -41013686 + AT_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr15 60368196 60368232 -41012289 + AT_rich Low_complexity Low_complexity 1 36 0 1695 158 7 11 chr15 60368289 60368568 -41011953 - AluJo SINE Alu -32 280 3 2474 226 39 7 chr15 60368575 60369186 -41011335 - L1M4 LINE L1 -823 5323 4693 1424 152 54 54 chr15 60369186 60369259 -41011262 - Tigger3(Golem) DNA MER2_type -955 276 204 1941 153 7 0 chr15 60369259 60369554 -41010967 - AluJb SINE Alu -15 297 1 1424 152 54 54 chr15 60369554 60369756 -41010765 - Tigger3(Golem) DNA MER2_type -1026 205 1 336 156 111 0 chr15 60369758 60369893 -41010628 - L1PA15 LINE L1 -1 6164 5941 25 51 0 0 chr15 60370454 60370493 -41010028 + AT_rich Low_complexity Low_complexity 1 39 0 712 142 117 17 chr15 60370676 60370796 -41009725 - FLAM_C SINE Alu 0 133 2 23 68 0 0 chr15 60374303 60374347 -41006174 + AT_rich Low_complexity Low_complexity 1 44 0 1911 161 42 39 chr15 60374523 60374759 -41005762 + MER46B DNA MER2_type 1 115 -2616 1927 166 3 3 chr15 60374759 60375061 -41005460 + AluJb SINE Alu 1 302 -10 1911 161 42 39 chr15 60375061 60375184 -41005337 + MER46B DNA MER2_type 115 236 0 368 383 13 7 chr15 60375738 60375892 -41004629 + L2 LINE L2 3117 3271 -1 196 272 8 96 chr15 60375889 60376014 -41004507 - L2 LINE L2 -214 3058 2945 * 234 181 57 114 chr15 60376089 60376194 -41004327 + MIR SINE MIR 118 216 -46 425 348 45 11 chr15 60376510 60376688 -41003833 + L3 LINE CR1 1052 1235 -342 244 303 145 7 chr15 60376746 60376891 -41003630 + MLT1H LTR MaLR 97 261 -288 1718 171 3 23 chr15 60377419 60377729 -41002792 - AluJo SINE Alu -8 304 1 191 59 0 29 chr15 60378182 60378216 -41002305 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2016 105 0 11 chr15 60378220 60378505 -41002016 - AluY SINE Alu -29 282 1 1932 127 0 0 chr15 60378525 60378800 -41001721 - AluSg SINE Alu -1 309 35 1606 174 8 8 chr15 60378807 60379072 -41001449 - AluJb SINE Alu -16 296 32 413 252 31 16 chr15 60379977 60380104 -41000417 + L2 LINE L2 2386 2514 -800 180 0 0 0 chr15 60380438 60380458 -41000063 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 270 263 63 120 chr15 60380496 60380590 -40999931 + L3 LINE CR1 1251 1332 -245 1187 193 24 0 chr15 60380590 60380803 -40999718 - MER20 DNA MER1_type 0 219 2 270 263 63 120 chr15 60380803 60380883 -40999638 + L3 LINE CR1 1332 1415 -162 1985 87 56 11 chr15 60381693 60381980 -40998541 - AluSc SINE Alu -9 300 1 1767 170 0 20 chr15 60382281 60382587 -40997934 + AluJb SINE Alu 1 300 -12 200 338 14 0 chr15 60383069 60383143 -40997378 + L2 LINE L2 3227 3301 -12 1905 161 6 3 chr15 60383237 60383548 -40996973 - AluJb SINE Alu 0 312 1 544 209 157 15 chr15 60383743 60383877 -40996644 - MIR SINE MIR -79 183 31 2380 59 0 7 chr15 60384426 60384742 -40995779 - AluY SINE Alu 0 311 1 460 256 236 16 chr15 60385809 60386059 -40994462 - L1ME3A LINE L1 -219 5951 5647 804 205 18 0 chr15 60386060 60386226 -40994295 - MER5A DNA MER1_type -3 186 18 1884 99 33 93 chr15 60386617 60386949 -40993572 - AluSx SINE Alu 0 312 1 207 205 0 0 chr15 60387979 60388018 -40992503 + MIR SINE MIR 217 255 -7 2039 259 81 25 chr15 60388145 60388549 -40991972 - L1ME3A LINE L1 -4 6166 5786 1696 174 14 3 chr15 60388549 60388831 -40991690 - AluJb SINE Alu -27 285 1 2039 259 81 25 chr15 60388831 60388894 -40991627 - L1ME3A LINE L1 -384 5786 5728 437 0 19 0 chr15 60388894 60388947 -40991574 + (CA)n Simple_repeat Simple_repeat 2 55 0 2039 259 81 25 chr15 60388947 60389211 -40991310 - L1ME3A LINE L1 -442 5728 5393 479 266 71 0 chr15 60389213 60389397 -40991124 + L1ME3A LINE L1 5903 6099 -71 654 225 139 37 chr15 60389400 60389724 -40990797 - L1ME3A LINE L1 -747 5399 5043 218 306 112 35 chr15 60389990 60390160 -40990361 + L2 LINE L2 3042 3224 -89 556 179 160 19 chr15 60390990 60391146 -40989375 - MER5B DNA MER1_type 0 178 1 697 259 220 42 chr15 60395415 60395966 -40984555 - L2 LINE L2 -1096 2218 1570 2159 109 6 6 chr15 60395970 60396282 -40984239 - AluSx SINE Alu 0 312 1 959 253 102 5 chr15 60396285 60396688 -40983833 + L1ME4a LINE L1 2995 3436 -2710 1935 106 0 4 chr15 60396688 60396961 -40983560 + AluSq SINE Alu 41 312 -1 2212 230 43 29 chr15 60396973 60397556 -40982965 - L1MCb LINE L1 -5043 1002 412 1272 239 14 0 chr15 60397560 60397840 -40982681 - L1MCb LINE L1 -5761 284 1 476 330 86 46 chr15 60398225 60398573 -40981948 + L1ME4a LINE L1 4803 5164 -982 412 314 103 36 chr15 60398575 60398769 -40981752 + L1ME4a LINE L1 5193 5399 -747 336 255 103 53 chr15 60398807 60399006 -40981515 + L1ME4a LINE L1 5453 5660 -461 3811 180 42 44 chr15 60399057 60399824 -40980697 - MER21B LTR ERV1 -98 765 1 260 336 149 0 chr15 60399994 60400101 -40980420 - L2 LINE L2 0 3313 3191 453 235 59 123 chr15 60400130 60400334 -40980187 + L1ME4a LINE L1 5929 6119 -2 1658 193 48 70 chr15 60400440 60400643 -40979878 - MER4A LTR ERV1 0 695 489 2225 81 13 7 chr15 60400643 60400952 -40979569 + AluY SINE Alu 1 311 0 1658 193 48 70 chr15 60400952 60401464 -40979057 - MER4A LTR ERV1 -206 489 1 332 217 58 0 chr15 60401589 60401658 -40978863 + L2 LINE L2 2995 3067 -205 1690 195 35 57 chr15 60401701 60401922 -40978599 - L1ME2 LINE L1 -3 6161 5952 2138 116 13 0 chr15 60401922 60402225 -40978296 - AluSx SINE Alu -5 307 1 1690 195 35 57 chr15 60402225 60402428 -40978093 - L1ME2 LINE L1 -212 5952 5746 1265 144 31 35 chr15 60402484 60402713 -40977808 - MER21A LTR ERV1 0 931 704 2052 114 16 0 chr15 60402717 60403023 -40977498 - AluSx SINE Alu -1 311 1 462 217 64 19 chr15 60403887 60403901 -40976620 - L1MA10 LINE L1 0 6334 6321 408 260 88 74 chr15 60403901 60404167 -40976354 - L1ME1 LINE L1 -5 6161 5914 6186 103 109 43 chr15 60404168 60405318 -40975203 + Tigger3b DNA MER2_type 1 1226 -5 240 35 0 0 chr15 60405336 60405365 -40975156 + (TA)n Simple_repeat Simple_repeat 2 30 0 234 81 0 0 chr15 60405391 60405428 -40975093 + (TG)n Simple_repeat Simple_repeat 2 38 0 1275 196 78 31 chr15 60407161 60407518 -40973003 + Charlie5 DNA MER1_type 2240 2613 0 243 311 42 50 chr15 60408217 60408336 -40972185 + L2 LINE L2 2946 3063 -209 210 105 0 0 chr15 60409591 60409629 -40970892 + (CA)n Simple_repeat Simple_repeat 1 38 0 841 83 0 0 chr15 60409729 60409838 -40970683 - AluSg/x SINE Alu -11 299 191 615 241 37 73 chr15 60412415 60412606 -40967915 - MER5A DNA MER1_type -5 184 1 2192 102 0 0 chr15 60413304 60413599 -40966922 - AluSg1 SINE Alu -14 295 1 2078 117 0 0 chr15 60413654 60413966 -40966555 - AluSx SINE Alu 0 312 1 258 260 208 0 chr15 60417797 60417893 -40962628 - L2 LINE L2 -3 3269 3154 198 304 125 9 chr15 60418009 60418121 -40962400 - L2 LINE L2 -193 3079 2955 2091 113 10 3 chr15 60419209 60419519 -40961002 - AluSx SINE Alu 0 312 1 942 192 47 23 chr15 60420016 60420230 -40960291 + MER20 DNA MER1_type 1 219 0 969 168 0 17 chr15 60420414 60420593 -40959928 - FRAM SINE Alu 0 176 1 1202 61 0 0 chr15 60421509 60421657 -40958864 - AluSg/x SINE Alu -5 307 160 368 324 9 0 chr15 60421661 60421766 -40958755 - MIR SINE MIR -65 143 38 2059 90 43 7 chr15 60422408 60422707 -40957814 - AluSg SINE Alu 0 310 1 923 91 0 0 chr15 60422707 60422828 -40957693 - AluSq/x SINE Alu -177 135 15 294 276 127 22 chr15 60424686 60424820 -40955701 + MIR3 SINE MIR 24 171 -37 197 318 61 0 chr15 60424838 60424904 -40955617 + L2 LINE L2 3148 3217 -55 2336 110 3 29 chr15 60426225 60426571 -40953950 + MER1B DNA MER1_type 1 337 0 3354 111 16 23 chr15 60427227 60427740 -40952781 - MER4B LTR ERV1 -101 509 1 21 36 0 0 chr15 60427922 60427950 -40952571 + AT_rich Low_complexity Low_complexity 1 28 0 2249 81 10 0 chr15 60428245 60428542 -40951979 - AluSp SINE Alu -9 304 5 2364 123 142 92 chr15 60428772 60429404 -40951117 + MER4A LTR ERV1 1 664 0 238 300 144 38 chr15 60430107 60430267 -40950254 + L3 LINE CR1 981 1157 -420 344 333 70 16 chr15 60431026 60431155 -40949366 - MIR SINE MIR -103 159 24 341 294 63 24 chr15 60431979 60432105 -40948416 - L2 LINE L2 -1 3312 3182 546 68 27 0 chr15 60432178 60432251 -40948270 + MADE1 DNA Mariner 6 80 0 227 280 224 9 chr15 60434720 60434827 -40945694 + L2 LINE L2 3138 3267 -5 842 218 106 40 chr15 60435719 60436068 -40944453 - L1MC5 LINE L1 -50 7911 7540 193 245 103 77 chr15 60436925 60437010 -40943511 - L2 LINE L2 -1524 1790 1709 2123 119 0 3 chr15 60437010 60437322 -40943199 - AluSx SINE Alu -1 311 1 193 245 103 77 chr15 60437322 60437469 -40943052 - L2 LINE L2 -1605 1709 1552 788 302 80 42 chr15 60437963 60438364 -40942157 - L2 LINE L2 0 3313 2898 268 326 134 17 chr15 60438490 60438662 -40941859 - L3 LINE CR1 -189 1388 1197 886 127 0 16 chr15 60438686 60438812 -40941709 - FLAM_C SINE Alu -9 124 1 572 108 0 0 chr15 60439455 60439538 -40940983 + FLAM SINE Alu 49 131 -12 187 259 194 43 chr15 60439563 60439702 -40940819 + L3 LINE CR1 1197 1356 -221 832 210 16 0 chr15 60440339 60440525 -40939996 + MER5A DNA MER1_type 1 189 0 606 140 10 0 chr15 60440686 60440786 -40939735 + L1M4 LINE L1 5720 5820 -354 1026 166 0 16 chr15 60440968 60441155 -40939366 - MER5A DNA MER1_type -1 188 5 423 258 84 13 chr15 60441173 60441328 -40939193 - MER5B DNA MER1_type -6 172 7 23 0 0 0 chr15 60441433 60441456 -40939065 + AT_rich Low_complexity Low_complexity 1 23 0 1862 186 52 44 chr15 60441457 60441921 -40938600 - L1MB5 LINE L1 -9 6165 5689 222 37 0 0 chr15 60443287 60443314 -40937207 + (CA)n Simple_repeat Simple_repeat 2 28 0 288 179 263 117 chr15 60443327 60443506 -40937015 + L1MC4 LINE L1 7474 7678 -364 1935 246 41 20 chr15 60443804 60444312 -40936209 - LTR40a LTR ERVL 0 519 1 1003 177 31 0 chr15 60445161 60445353 -40935168 + MER20 DNA MER1_type 1 198 -21 256 200 0 0 chr15 60445738 60445783 -40934738 - MIR SINE MIR -6 256 212 1097 202 28 0 chr15 60445786 60445999 -40934522 - MER58A DNA MER1_type 0 224 6 521 343 29 0 chr15 60446001 60446173 -40934348 - MIR SINE MIR -43 219 43 228 328 115 23 chr15 60446476 60446650 -40933871 - L3b LINE CR1 -182 1401 1212 523 232 96 45 chr15 60446660 60446837 -40933684 + MIR SINE MIR 8 193 -69 211 231 19 0 chr15 60447165 60447217 -40933304 - L2 LINE L2 -2 3270 3218 2271 68 39 0 chr15 60447681 60447962 -40932559 + AluSp SINE Alu 1 292 -21 715 139 44 73 chr15 60447985 60448122 -40932399 + FLAM_C SINE Alu 1 133 0 851 188 12 6 chr15 60448725 60448885 -40931636 - AluJb SINE Alu -14 298 138 194 326 174 14 chr15 60449162 60449300 -40931221 + MIR3 SINE MIR 20 179 -29 2157 119 7 7 chr15 60449631 60449934 -40930587 + AluSx SINE Alu 1 303 -9 532 291 127 72 chr15 60449977 60450396 -40930125 + L2 LINE L2 2828 3269 -3 2268 129 0 0 chr15 60450687 60450996 -40929525 - AluSx SINE Alu -3 309 1 346 235 0 12 chr15 60451942 60452023 -40928498 - HsTC2 DNA Tc2 -1815 83 4 185 282 0 0 chr15 60453109 60453148 -40927373 - MIR SINE MIR -64 198 160 583 273 32 64 chr15 60453169 60453255 -40927266 - MIR SINE MIR -24 238 151 1041 124 68 23 chr15 60453255 60453432 -40927089 - MER5A DNA MER1_type -4 185 1 583 273 32 64 chr15 60453432 60453565 -40926956 - MIR SINE MIR -111 151 26 1838 137 65 3 chr15 60453955 60454247 -40926274 + AluJb SINE Alu 2 311 -1 2533 90 0 0 chr15 60454266 60454578 -40925943 + AluSx SINE Alu 1 312 0 187 102 20 20 chr15 60455615 60455664 -40924857 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 380 228 102 8 chr15 60455726 60455853 -40924668 - L1ME3A LINE L1 0 6170 6032 2138 110 24 0 chr15 60456856 60457147 -40923374 + AluSx SINE Alu 1 298 -14 428 284 97 23 chr15 60457344 60457520 -40923001 - MER5A DNA MER1_type 0 189 1 219 280 160 30 chr15 60457521 60457621 -40922900 - MIR3 SINE MIR -49 159 47 289 302 164 13 chr15 60457955 60458187 -40922334 + L2 LINE L2 2825 3091 -181 2358 104 7 0 chr15 60459569 60459877 -40920644 - AluSq SINE Alu -3 310 1 298 292 14 0 chr15 60460049 60460121 -40920400 + MIR3 SINE MIR 85 157 -51 831 223 26 22 chr15 60460124 60460393 -40920128 + HAL1 LINE L1 2234 2503 -4 2123 144 20 0 chr15 60461040 60461346 -40919175 + AluJb SINE Alu 1 312 0 551 101 0 11 chr15 60461349 60461438 -40919083 + (GAAA)n Simple_repeat Simple_repeat 2 89 0 383 247 113 33 chr15 60462109 60462259 -40918262 - MLT1D LTR MaLR -337 168 7 413 297 118 20 chr15 60462592 60462787 -40917734 + L1MC/D LINE L1 5556 5772 -392 297 224 90 0 chr15 60462802 60462869 -40917652 - LTR16C LTR ERVL -7 484 412 938 279 101 20 chr15 60462929 60463334 -40917187 + LTR16A LTR ERVL 1 438 -12 1251 184 56 39 chr15 60463506 60463740 -40916781 - AluJo SINE Alu -69 243 6 26 30 0 0 chr15 60463744 60463777 -40916744 + AT_rich Low_complexity Low_complexity 1 33 0 1647 161 104 7 chr15 60464025 60464305 -40916216 + AluJo SINE Alu 1 307 -5 363 185 19 9 chr15 60465128 60465236 -40915285 + CT-rich Low_complexity Low_complexity 2 110 0 489 227 57 63 chr15 60465480 60465684 -40914837 + MIR SINE MIR 2 213 -49 379 180 6 13 chr15 60466636 60466710 -40913811 - MIR3 SINE MIR -30 178 103 237 304 0 14 chr15 60467347 60467416 -40913105 - L2 LINE L2 0 3313 3246 225 227 45 30 chr15 60467735 60467801 -40912720 + L2 LINE L2 2872 2938 -375 1389 180 4 8 chr15 60467805 60468050 -40912471 - AluJo SINE Alu -64 248 5 2608 135 52 2 chr15 60468101 60468509 -40912012 - MSTC LTR MaLR 0 428 1 23 0 0 0 chr15 60468598 60468621 -40911900 + AT_rich Low_complexity Low_complexity 1 23 0 858 145 0 0 chr15 60468623 60468747 -40911774 - FLAM_C SINE Alu -7 126 3 197 273 236 0 chr15 60468747 60468802 -40911719 + L2 LINE L2 3184 3251 -21 612 243 64 50 chr15 60469073 60469321 -40911200 + MIR SINE MIR 5 262 0 358 338 23 35 chr15 60469328 60469502 -40911019 - MIR SINE MIR -85 123 4 21 0 0 0 chr15 60469533 60469554 -40910967 + AT_rich Low_complexity Low_complexity 1 21 0 265 262 198 32 chr15 60470522 60470648 -40909873 - MIR SINE MIR -107 155 9 230 138 0 103 chr15 60470988 60471034 -40909487 - L1M3 LINE L1 -732 5439 5399 1621 111 5 0 chr15 60471034 60471242 -40909279 - AluJb SINE Alu -17 295 87 230 138 0 103 chr15 60471242 60471253 -40909268 - L1M3 LINE L1 -772 5399 5388 488 239 116 136 chr15 60471438 60471894 -40908627 + L2 LINE L2 2824 3270 -2 229 282 90 0 chr15 60471979 60472057 -40908464 - MIR SINE MIR -3 259 175 222 216 20 0 chr15 60472239 60472290 -40908231 + L2 LINE L2 3262 3313 0 2362 102 0 0 chr15 60472457 60472760 -40907761 - AluSg SINE Alu -7 303 1 459 192 144 16 chr15 60472780 60472905 -40907616 - MLT1J1 LTR MaLR -305 141 1 311 209 58 58 chr15 60472981 60473067 -40907454 - MIR3 SINE MIR -28 180 95 816 184 101 32 chr15 60473090 60473307 -40907214 + AluJo SINE Alu 3 234 -78 1889 170 20 0 chr15 60473854 60474160 -40906361 + AluJb SINE Alu 1 312 0 551 101 0 11 chr15 60474163 60474252 -40906269 + (GAAA)n Simple_repeat Simple_repeat 2 89 0 2480 91 3 0 chr15 60474688 60474997 -40905524 + AluSp SINE Alu 1 310 -3 289 302 164 13 chr15 60476379 60476611 -40903910 - L2 LINE L2 -181 3091 2825 230 270 160 30 chr15 60476947 60477047 -40903474 + MIR3 SINE MIR 47 159 -49 428 275 90 28 chr15 60477048 60477226 -40903295 + MER5A DNA MER1_type 1 189 0 2138 110 24 0 chr15 60477423 60477714 -40902807 - AluSx SINE Alu -14 298 1 261 282 111 0 chr15 60478717 60478834 -40901687 + L1ME3A LINE L1 6032 6161 -9 551 101 0 11 chr15 60479573 60479662 -40900859 + (TTTC)n Simple_repeat Simple_repeat 2 89 0 2123 144 20 0 chr15 60479665 60479971 -40900550 - AluJb SINE Alu 0 312 1 831 223 26 22 chr15 60480618 60480887 -40899634 - HAL1 LINE L1 -4 2503 2234 298 292 14 0 chr15 60480890 60480962 -40899559 - MIR3 SINE MIR -51 157 85 2324 96 0 0 chr15 60481134 60481426 -40899095 + AluSx SINE Alu 1 292 -20 219 69 0 0 chr15 60482390 60482419 -40898102 + (TG)n Simple_repeat Simple_repeat 1 29 0 271 155 10 58 chr15 60483286 60483389 -40897132 + GA-rich Low_complexity Low_complexity 2 99 0 383 119 15 0 chr15 60484040 60484107 -40896414 + (TG)n Simple_repeat Simple_repeat 1 68 0 770 111 17 0 chr15 60485190 60485307 -40895214 - LTR8 LTR ERV1 0 691 573 2150 132 10 0 chr15 60485308 60485612 -40894909 - AluSx SINE Alu -5 307 1 885 106 0 0 chr15 60485612 60485725 -40894796 - AluSq/x SINE Alu -178 135 23 2096 192 20 88 chr15 60485725 60485758 -40894763 - LTR8 LTR ERV1 -128 563 529 2020 94 49 4 chr15 60485758 60486047 -40894474 - AluSg SINE Alu 0 301 1 2096 192 20 88 chr15 60486047 60486615 -40893906 - LTR8 LTR ERV1 -162 529 1 205 276 13 66 chr15 60486995 60487034 -40893487 - L2 LINE L2 -19 3253 3218 3083 131 198 7 chr15 60487034 60487624 -40892897 + MER39 LTR ERV1 5 707 0 205 276 13 66 chr15 60487624 60487660 -40892861 - L2 LINE L2 -54 3218 3182 191 384 18 18 chr15 60488409 60488521 -40892000 - MIR SINE MIR -73 135 24 278 266 145 44 chr15 60489141 60489325 -40891196 + MIR3 SINE MIR 3 196 -58 189 0 0 0 chr15 60489342 60489363 -40891158 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 235 200 33 33 chr15 60489363 60489423 -40891098 - L2 LINE L2 -32 3281 3222 404 213 189 8 chr15 60489804 60489931 -40890590 - MIR SINE MIR -11 251 102 2216 120 13 0 chr15 60490072 60490380 -40890141 - AluSx SINE Alu 0 312 1 207 113 57 19 chr15 60490679 60490732 -40889789 + GA-rich Low_complexity Low_complexity 2 56 0 289 296 101 35 chr15 60490966 60491135 -40889386 + MIR SINE MIR 33 212 -50 196 309 62 0 chr15 60491299 60491380 -40889141 + MIR SINE MIR 70 155 -107 364 259 47 133 chr15 60491827 60491970 -40888551 + MIR SINE MIR 9 122 -140 2359 121 0 0 chr15 60491970 60492283 -40888238 + AluSq SINE Alu 1 313 0 364 259 47 133 chr15 60492283 60492394 -40888127 + MIR SINE MIR 122 241 -21 1937 118 0 45 chr15 60494105 60494419 -40886102 - AluSx SINE Alu -12 300 1 847 218 6 0 chr15 60495248 60495422 -40885099 - FRAM SINE Alu -1 175 1 2034 120 30 0 chr15 60496028 60496328 -40884193 + AluSx SINE Alu 1 309 -3 558 153 10 10 chr15 60496511 60496609 -40883912 + FLAM_A SINE Alu 35 132 -10 736 203 101 63 chr15 60496646 60496699 -40883822 - L1MC5 LINE L1 -169 7792 7743 1094 154 46 0 chr15 60496699 60496874 -40883647 - MER5A DNA MER1_type -2 187 5 736 203 101 63 chr15 60496874 60497106 -40883415 - L1MC5 LINE L1 -218 7743 7496 2122 97 0 26 chr15 60497187 60497495 -40883026 + AluSx SINE Alu 1 300 -12 527 252 77 13 chr15 60497648 60497803 -40882718 + MIR SINE MIR 79 243 -19 224 275 59 1